Psyllid ID: psy14299

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------45
Protein Sequence
MNLKPFLLPGGSISNMYSICLARYRLDPDTKRKGLSHLPPLCMFTSEDSHYSMLKAAHWLGIGMDNVIRVKTNERGQMICSFLEQTIQTSLAEKKIPLFVNATAGTTVLGAFDPLDEIATVCEKYDLWMHVDACWGGSLIFSEKYSFVLKGINRANSVSWNPHKMLGAPLQCSILLIKEKGLLHQANATAATYLFQQDKFYDVSFDTGDKSVQCGRKVDAFKLWLMWKARGNLGFRHFVDNAVDCSRGSMTFSTLLCFDLQGLLHQANATAATYLFQQDKFYDVSFDTGDKSVQCGRKVDAFKLWLMWKARGNLGFRHFVDNAVDCSRYFLSQISQRPGFRLVIPEFQCTNICFWFIPVSLRDKVEDETWWSTLSKVAPRIKEKLVLGGTLMIGYQPLQHRNLHNFFRLVTTCHPASSRQDMDYAIDQIELRGAEVDLEMQAEALSLA
Secondary Structure (PSIPRED)
ccccccccccHHHHHHHHHHHHHHccccHHHHccccccccEEEEEcccccHHHHHHHHHHccccccEEEEEccccccccHHHHHHHHHHHHHccccEEEEEEEcccccccccccHHHHHHHHHHHccEEEEEcccccccccccccHHHccccccccEEEEccccccccccccEEEEEccccHHHHHHcccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccEEEEcccccEEEEEEEEEccccccccccHHHHHHHHHHHHHHHHHHHHcccEEEEEEEccccccccEEEEEEcccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHccc
Secondary Structure Prediction (SSPRO)
cccccEEcccHHHHHHHHHHHHHHHHHHHHHHccccHHHHEEEEEcHHccHHHHHHHHHHcccccEEEEEcccccccccHHHHHHHHHHHHHccccEEEEEEEcccccccccccHHHHHHHHHHccEEEEEEcHHHccHHccHHHHHHHcccEEcccEccccccEEEEEccccEEEEEcccHHHHHcccccHHEEccccccccccccccccccccHHHHHHHHHHHHHHHcHHHHHHHHHHHHHHHHHHHHHHccEEEEEcccccHHHHHHHHHHcccccEEEEcccccccEEEEcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcHHHccccccEEEcccccccEEEEEcccccccccccHHHHHHHHHHHHHHHHHHHHcccEEEEcccccccccEEEEEEEEcccccccHHHHHHHHHHHHHHcccccHHHHHHHHHcc
Coil and Loop (DISEMBL)
mnlkpfllpggsisnMYSICLARyrldpdtkrkglshlpplcmftsedsHYSMLKAAHWLGIGMDNVIRVKTNERGQMICSFLEQTIQTSlaekkiplfvnatagttvlgafdpldEIATVCEKYDlwmhvdacwggslifsEKYSFVLKGINransvswnphkmlgaplQCSILLIKEKGLLHQANATAATYLfqqdkfydvsfdtgdksvqcgrkVDAFKLWLMWKArgnlgfrhfvdnavdcsrgsmtfSTLLCFDLQGLLHQANATAATYLfqqdkfydvsfdtgdksvqcgrkVDAFKLWLMWKArgnlgfrhfvdnavdCSRYFLSqisqrpgfrlvipefqctnicfwfipvslrdkvedETWWSTLSKVAPRIKEKLVLGGtlmigyqplqhrnlHNFFRLVttchpassrqdmDYAIDQIELRGAEVDLEMQAEALSLA
Flexible Loop (DISEMBL)
mnlkpfllpggsiSNMYSICLARYRLDPDTKRKGLSHLPPLCMFTSEDSHYSMLKAAHWLGIGMDNVIRVKTNERGQMICSFLEQTIQTSLAEKKIPLFVNATAGTTVLGAFDPLDEIATVCEKYDLWMHVDACWGGSLIFSEKYSFVLKGINRANSVSWNPHKMLGAPLQCSILLIKEKGLLHQANATAATYLFQQDKFYDVSFDTGDKSVQCGRKVDAFKLWLMWKARGNLGFRHFVDNAVDCSRGSMTFSTLLCFDLQGLLHQANATAATYLFQQDKFYDVSFDTGDKSVQCGRKVDAFKLWLMWKARGNLGFRHFVDNAVDCSRYFLSQISQRPGFRLVIPEFQCTNICFWFIPVSLRDKVEDETWWstlskvaprikEKLVLGGTLMIGYQPLQHRNLHNFFRLVTTCHPASSRQDMDYAIDQIELRGAEVDLEMQAEALSLA
Low Complexity Region (SEG)
MNLKPFLLPGGSISNMYSICLARYRLDPDTKRKGLSHLPPLCMFTSEDSHYSMLKAAHWLGIGMDNVIRVKTNERGQMICSFLEQTIQTSLAEKKIPLFVNATAGTTVLGAFDPLDEIATVCEKYDLWMHVDACWGGSLIFSEKYSFVLKGINRANSVSWNPHKMLGAPLQCSILLIKEKGLLHQANATAATYLFQQDKFYDVSFDTGDKSVQCGRKVDAFKLWLMWKARGNLGFRHFVDNAVDCSRGSMTFSTLLCFDLQGLLHQANATAATYLFQQDKFYDVSFDTGDKSVQCGRKVDAFKLWLMWKARGNLGFRHFVDNAVDCSRYFLSQISQRPGFRLVIPEFQCTNICFWFIPVSLRDKVEDETWWSTLSKVAPRIKEKLVLGGTLMIGYQPLQHRNLHNFFRLVTTCHPASSRQDMDYAIDQIELRGAEVDLEMQAEALSLA
Disordered region (IsUnstruct)
*****FLLPGGSISNMYSICLARYRLDPDTKRKGLSHLPPLCMFTSEDSHYSMLKAAHWLGIGMDNVIRVKTNERGQMICSFLEQTIQTSLAEKKIPLFVNATAGTTVLGAFDPLDEIATVCEKYDLWMHVDACWGGSLIFSEKYSFVLKGINRANSVSWNPHKMLGAPLQCSILLIKEKGLLHQANATAATYLFQQDKFYDVSFDTGDKSVQCGRKVDAFKLWLMWKARGNLGFRHFVDNAVDCSRGSMTFSTLLCFDLQGLLHQANATAATYLFQQDKFYDVSFDTGDKSVQCGRKVDAFKLWLMWKARGNLGFRHFVDNAVDCSRYFLSQISQRPGFRLVIPEFQCTNICFWFIPVSLRDKVEDETWWSTLSKVAPRIKEKLVLGGTLMIGYQPLQHRNLHNFFRLVTTCHPASS*QDMDYAIDQIELR****************
Disordered Region (DISOPRED)
MNLKPFLLPGGSISNMYSICLARYRLDPDTKRKGLSHLPPLCMFTSEDSHYSMLKAAHWLGIGMDNVIRVKTNERGQMICSFLEQTIQTSLAEKKIPLFVNATAGTTVLGAFDPLDEIATVCEKYDLWMHVDACWGGSLIFSEKYSFVLKGINRANSVSWNPHKMLGAPLQCSILLIKEKGLLHQANATAATYLFQQDKFYDVSFDTGDKSVQCGRKVDAFKLWLMWKARGNLGFRHFVDNAVDCSRGSMTFSTLLCFDLQGLLHQANATAATYLFQQDKFYDVSFDTGDKSVQCGRKVDAFKLWLMWKARGNLGFRHFVDNAVDCSRYFLSQISQRPGFRLVIPEFQCTNICFWFIPVSLRDKVEDETWWSTLSKVAPRIKEKLVLGGTLMIGYQPLQHRNLHNFFRLVTTCHPASSRQDMDYAIDQIELRGAEVDLE*********
Disordered Region (DISEMBL)
MNLKPFLLPGGSISNMYSICLARYRLDPDTKRKGLSHLPPLCMFTSEDSHYSMLKAAHWLGIGMDNVIRVKTNERGQMICSFLEQTIQTSLAEKKIPLFVNATAGTTVLGAFDPLDEIATVCEKYDLWMHVDACWGGSLIFSEKYSFVLKGINRANSVSWNPHKMLGAPLQCSILLIKEKGLLHQANATAATYLFQQDKFYDVSFDTGDKSVQCGRKVDAFKLWLMWKARGNLGFRHFVDNAVDCSRGSMTFSTLLCFDLQGLLHQANATAATYLFQQDKFYDVSFDTGDKSVQCGRKVDAFKLWLMWKARGNLGFRHFVDNAVDCSRYFLSQISQRPGFRLVIPEFQCTNICFWFIPVSLRDKVEDETWWSTLSKVAPRIKEKLVLGGTLMIGYQPLQHRNLHNFFRLVTTCHPASSRQDMDYAIDQIELRGAEVDLEMQAEALSLA
Disordered Region (DISPRO)
****PFLLPGGSISNMYSICLARYRLDPDTKRKGLSHLPPLCMFTSEDSHYSMLKAAHWLGIGMDNVIRVKTNERGQMICSFLEQTIQTSLAEKKIPLFVNATAGTTVLGAFDPLDEIATVCEKYDLWMHVDACWGGSLIFSEKYSFVLKGINRANSVSWNPHKMLGAPLQCSILLIKEKGLLHQANATAATYLFQQDKFYDVSFDTGDKSVQCGRKVDAFKLWLMWKARGNLGFRHFVDNAVDCSRGSMTFSTLLCFDLQGLLHQANATAATYLFQQDKFYDVSFDTGDKSVQCGRKVDAFKLWLMWKARGNLGFRHFVDNAVDCSRYFLSQISQRPGFRLVIPEFQCTNICFWFIPVSLRDKVEDETWWSTLSKVAPRIKEKLVLGGTLMIGYQPLQHRNLHNFFRLVTTCHPASSRQDMDYAIDQIELRGAEVDLEM*AE**S**
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
oooooohhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MNLKPFLLPGGSISNMYSICLARYRLDPDTKRKGLSHLPPLCMFTSEDSHYSMLKAAHWLGIGMDNVIRVKTNERGQMICSFLEQTIQTSLAEKKIPLFVNATAGTTVLGAFDPLDEIATVCEKYDLWMHVDACWGGSLIFSEKYSFVLKGINRANSVSWNPHKMLGAPLQCSILLIKEKGLLHQANATAATYLFQQDKFYDVSFDTGDKSVQCGRKVDAFKLWLMWKARGNLGFRHFVDNAVDCSRGSMTFSTLLCFDLQGLLHQANATAATYLFQQDKFYDVSFDTGDKSVQCGRKVDAFKLWLMWKARGNLGFRHFVDNAVDCSRYFLSQISQRPGFRLVIPEFQCTNICFWFIPVSLRDKVEDETWWSTLSKVAPRIKEKLVLGGTLMIGYQPLQHRNLHNFFRLVTTCHPASSRQDMDYAIDQIELRGAEVDLEMQAEALSLA
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	448	2.2.26 [Sep-21-2011]
P14748	594	Glutamate decarboxylase 1	N/A	N/A	0.466	0.351	0.581	2e-81
A0PA85	594	Glutamate decarboxylase 1	yes	N/A	0.466	0.351	0.581	2e-81
P48318	593	Glutamate decarboxylase 1	yes	N/A	0.464	0.350	0.584	3e-81
Q28D99	511	Glutamate decarboxylase-l	yes	N/A	0.533	0.467	0.591	3e-81
Q0VCA1	594	Glutamate decarboxylase 1	yes	N/A	0.466	0.351	0.577	3e-81
P18088	593	Glutamate decarboxylase 1	yes	N/A	0.466	0.352	0.581	4e-81
P48319	594	Glutamate decarboxylase 1	yes	N/A	0.466	0.351	0.581	7e-81
Q5IS68	594	Glutamate decarboxylase 1	yes	N/A	0.466	0.351	0.577	1e-80
Q99259	594	Glutamate decarboxylase 1	yes	N/A	0.466	0.351	0.573	1e-80
Q05329	585	Glutamate decarboxylase 2	no	N/A	0.466	0.357	0.560	1e-79

>sp|P14748|DCE1_FELCA Glutamate decarboxylase 1 OS=Felis catus GN=GAD1 PE=2 SV=3

 Score =  303 bits (776), Expect = 2e-81,   Method: Compositional matrix adjust.
 Identities = 139/239 (58%), Positives = 177/239 (74%)

Query: 9   PGGSISNMYSICLARYRLDPDTKRKGLSHLPPLCMFTSEDSHYSMLKAAHWLGIGMDNVI 68
           PGG+ISNMYSI  ARY+  P+ K KG++ +P L +FTSE SHYS+ KA   LG G DNVI
Sbjct: 250 PGGAISNMYSIMAARYKFFPEVKTKGMAAVPKLVLFTSEHSHYSIKKAGAALGFGTDNVI 309

Query: 69  RVKTNERGQMICSFLEQTIQTSLAEKKIPLFVNATAGTTVLGAFDPLDEIATVCEKYDLW 128
            +K NERG++I + LE  I  +  +  +PL+VNATAGTTV GAFDP+ EIA +CEKY+LW
Sbjct: 310 LIKCNERGKIIPADLEAKILEAKQKGYVPLYVNATAGTTVYGAFDPIQEIADICEKYNLW 369

Query: 129 MHVDACWGGSLIFSEKYSFVLKGINRANSVSWNPHKMLGAPLQCSILLIKEKGLLHQANA 188
           +HVDA WGG L+ S K+   L GI RANSV+WNPHKM+G  LQCS +L+KEKG+L   N 
Sbjct: 370 LHVDAAWGGGLLMSRKHRHKLSGIERANSVTWNPHKMMGVLLQCSAILVKEKGILQGCNQ 429

Query: 189 TAATYLFQQDKFYDVSFDTGDKSVQCGRKVDAFKLWLMWKARGNLGFRHFVDNAVDCSR 247
             A YLFQ DK YDVS+DTGDK++QCGR VD FK WLMWKA+G +GF + ++  ++ + 
Sbjct: 430 MCAGYLFQPDKQYDVSYDTGDKAIQCGRHVDIFKFWLMWKAKGTVGFENQINKCLELAE 488

Catalyzes the production of GABA.
Felis catus (taxid: 9685)
EC: 4EC: .EC: 1EC: .EC: 1EC: .EC: 1EC: 5

>sp|A0PA85|DCE1_CANFA Glutamate decarboxylase 1 OS=Canis familiaris GN=GAD1 PE=2 SV=1

 Score =  303 bits (776), Expect = 2e-81,   Method: Compositional matrix adjust.
 Identities = 139/239 (58%), Positives = 177/239 (74%)

Query: 9   PGGSISNMYSICLARYRLDPDTKRKGLSHLPPLCMFTSEDSHYSMLKAAHWLGIGMDNVI 68
           PGG+ISNMYSI  ARY+  P+ K KG++ +P L +FTSE SHYS+ KA   LG G DNVI
Sbjct: 250 PGGAISNMYSIMAARYKFFPEVKTKGMAAVPKLVLFTSEHSHYSIKKAGAALGFGTDNVI 309

Query: 69  RVKTNERGQMICSFLEQTIQTSLAEKKIPLFVNATAGTTVLGAFDPLDEIATVCEKYDLW 128
            +K NERG++I + LE  I  +  +  +PL+VNATAGTTV GAFDP+ EIA +CEKY+LW
Sbjct: 310 LIKCNERGKIIPADLEAKILEAKQKGYVPLYVNATAGTTVYGAFDPIQEIADICEKYNLW 369

Query: 129 MHVDACWGGSLIFSEKYSFVLKGINRANSVSWNPHKMLGAPLQCSILLIKEKGLLHQANA 188
           +HVDA WGG L+ S K+   L GI RANSV+WNPHKM+G  LQCS +L+KEKG+L   N 
Sbjct: 370 LHVDAAWGGGLLMSRKHRHKLSGIERANSVTWNPHKMMGVLLQCSAILVKEKGILQGCNQ 429

Query: 189 TAATYLFQQDKFYDVSFDTGDKSVQCGRKVDAFKLWLMWKARGNLGFRHFVDNAVDCSR 247
             A YLFQ DK YDVS+DTGDK++QCGR VD FK WLMWKA+G +GF + ++  ++ + 
Sbjct: 430 MCAGYLFQPDKQYDVSYDTGDKAIQCGRHVDIFKFWLMWKAKGTVGFENQINKCLELAE 488

Catalyzes the production of GABA.

Canis familiaris (taxid: 9615)

EC: 4

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: 1

EC: 5

>sp|P48318|DCE1_MOUSE Glutamate decarboxylase 1 OS=Mus musculus GN=Gad1 PE=2 SV=2

 Score =  302 bits (774), Expect = 3e-81,   Method: Compositional matrix adjust.
 Identities = 139/238 (58%), Positives = 177/238 (74%)

Query: 9   PGGSISNMYSICLARYRLDPDTKRKGLSHLPPLCMFTSEDSHYSMLKAAHWLGIGMDNVI 68
           PGG+ISNMYSI  ARY+  P+ K KG++ +P L +FTSE SHYS+ KA   LG G DNVI
Sbjct: 249 PGGAISNMYSIMAARYKYFPEVKTKGMAAVPKLVLFTSEHSHYSIKKAGAALGFGTDNVI 308

Query: 69  RVKTNERGQMICSFLEQTIQTSLAEKKIPLFVNATAGTTVLGAFDPLDEIATVCEKYDLW 128
            +K NERG++I + LE  I  +  +  +PL+VNATAGTTV GAFDP+ EIA +CEKY+LW
Sbjct: 309 LIKCNERGKIIPADLEAKILDAKQKGYVPLYVNATAGTTVYGAFDPIQEIADICEKYNLW 368

Query: 129 MHVDACWGGSLIFSEKYSFVLKGINRANSVSWNPHKMLGAPLQCSILLIKEKGLLHQANA 188
           +HVDA WGG L+ S K+   L GI RANSV+WNPHKM+G  LQCS +L+KEKG+L   N 
Sbjct: 369 LHVDAAWGGGLLMSRKHRHKLSGIERANSVTWNPHKMMGVLLQCSAILVKEKGILQGCNQ 428

Query: 189 TAATYLFQQDKFYDVSFDTGDKSVQCGRKVDAFKLWLMWKARGNLGFRHFVDNAVDCS 246
             A YLFQ DK YDVS+DTGDK++QCGR VD FK WLMWKA+G +GF + ++  ++ +
Sbjct: 429 MCAGYLFQPDKQYDVSYDTGDKAIQCGRHVDIFKFWLMWKAKGTVGFENQINKCLELA 486

Catalyzes the production of GABA.

Mus musculus (taxid: 10090)

EC: 4

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: 1

EC: 5

>sp|Q28D99|GADL1_XENTR Glutamate decarboxylase-like protein 1 (Fragment) OS=Xenopus tropicalis GN=gadl1 PE=2 SV=2

 Score =  302 bits (774), Expect = 3e-81,   Method: Compositional matrix adjust.
 Identities = 142/240 (59%), Positives = 180/240 (75%), Gaps = 1/240 (0%)

Query: 9   PGGSISNMYSICLARYRLDPDTKRKGLSHLPPLCMFTSEDSHYSMLKAAHWLGIGMDNVI 68
           PGGS+SNMY++ LARY+  PD K+KGLS  P L MFTSE+ HYSM KAA +LGIG +NV 
Sbjct: 168 PGGSVSNMYAVNLARYKYCPDIKQKGLSSAPRLVMFTSEECHYSMKKAAAFLGIGTENVY 227

Query: 69  RVKTNERGQMICSFLEQTIQTSLAEKKIPLFVNATAGTTVLGAFDPLDEIATVCEKYDLW 128
            VKT++RG+MI   LE  IQ +  E  +P  V+AT+GTTVLGAFDPLD+IA +CEK+ LW
Sbjct: 228 FVKTDDRGKMIPEELENQIQRAKKEGAVPFLVSATSGTTVLGAFDPLDDIANICEKHKLW 287

Query: 129 MHVDACWGGSLIFSEKYSFVLKGINRANSVSWNPHKMLGAPLQCSILLIKEK-GLLHQAN 187
            HVDA WGGS + S+KY   L GI+RA+SV+WNPHKML A +QC  LL+++  GLL + +
Sbjct: 288 FHVDASWGGSALMSQKYRKRLHGIHRADSVAWNPHKMLMAGIQCCALLVRDNSGLLKRCH 347

Query: 188 ATAATYLFQQDKFYDVSFDTGDKSVQCGRKVDAFKLWLMWKARGNLGFRHFVDNAVDCSR 247
           +  ATYLFQQDKFYDV +DTGDKS+QC R+ DAFK W+MWKA G  G    ++ A+  +R
Sbjct: 348 SAEATYLFQQDKFYDVQYDTGDKSIQCSRRADAFKFWMMWKALGTTGLEERINRALALTR 407

Xenopus tropicalis (taxid: 8364)

EC: 4

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: -

>sp|Q0VCA1|DCE1_BOVIN Glutamate decarboxylase 1 OS=Bos taurus GN=GAD1 PE=2 SV=1

 Score =  302 bits (774), Expect = 3e-81,   Method: Compositional matrix adjust.
 Identities = 138/239 (57%), Positives = 178/239 (74%)

Query: 9   PGGSISNMYSICLARYRLDPDTKRKGLSHLPPLCMFTSEDSHYSMLKAAHWLGIGMDNVI 68
           PGG+ISNMYSI  AR++  P+ K KG++ +P L +FTSE SHYS+ KA   LG G DNVI
Sbjct: 250 PGGAISNMYSIMAARFKYFPEVKTKGMAAVPKLVLFTSEHSHYSIKKAGAALGFGTDNVI 309

Query: 69  RVKTNERGQMICSFLEQTIQTSLAEKKIPLFVNATAGTTVLGAFDPLDEIATVCEKYDLW 128
            +K NERG++I + LE  I  +  +  +PL+VNATAGTTV GAFDP+ EIA +CEKY+LW
Sbjct: 310 LIKCNERGKIIPADLETKILEAKQKGYVPLYVNATAGTTVYGAFDPIQEIADICEKYNLW 369

Query: 129 MHVDACWGGSLIFSEKYSFVLKGINRANSVSWNPHKMLGAPLQCSILLIKEKGLLHQANA 188
           +HVDA WGG L+ S+K+   L GI RANSV+WNPHKM+G  LQCS +L+KEKG+L   N 
Sbjct: 370 LHVDAAWGGGLLMSQKHRHKLSGIERANSVTWNPHKMMGVLLQCSAILVKEKGILQGCNQ 429

Query: 189 TAATYLFQQDKFYDVSFDTGDKSVQCGRKVDAFKLWLMWKARGNLGFRHFVDNAVDCSR 247
             A YLFQ DK YDVS+DTGDK++QCGR VD FK WLMWKA+G +GF + ++  ++ + 
Sbjct: 430 MCAGYLFQPDKQYDVSYDTGDKAIQCGRHVDIFKFWLMWKAKGTVGFENQINKCLELAE 488

Catalyzes the production of GABA.

Bos taurus (taxid: 9913)

EC: 4

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: 1

EC: 5

>sp|P18088|DCE1_RAT Glutamate decarboxylase 1 OS=Rattus norvegicus GN=Gad1 PE=2 SV=1

 Score =  302 bits (773), Expect = 4e-81,   Method: Compositional matrix adjust.
 Identities = 139/239 (58%), Positives = 177/239 (74%)

Query: 9   PGGSISNMYSICLARYRLDPDTKRKGLSHLPPLCMFTSEDSHYSMLKAAHWLGIGMDNVI 68
           PGG+ISNMYSI  ARY+  P+ K KG++ +P L +FTSE SHYS+ KA   LG G DNVI
Sbjct: 249 PGGAISNMYSIMAARYKYFPEVKTKGMAAVPKLVLFTSEHSHYSIKKAGAALGFGTDNVI 308

Query: 69  RVKTNERGQMICSFLEQTIQTSLAEKKIPLFVNATAGTTVLGAFDPLDEIATVCEKYDLW 128
            +K NERG++I + LE  I  +  +  +PL+VNATAGTTV GAFDP+ EIA +CEKY+LW
Sbjct: 309 LIKCNERGKIIPADLEAKILDAKQKGFVPLYVNATAGTTVYGAFDPIQEIADICEKYNLW 368

Query: 129 MHVDACWGGSLIFSEKYSFVLKGINRANSVSWNPHKMLGAPLQCSILLIKEKGLLHQANA 188
           +HVDA WGG L+ S K+   L GI RANSV+WNPHKM+G  LQCS +L+KEKG+L   N 
Sbjct: 369 LHVDAAWGGGLLMSRKHRHKLSGIERANSVTWNPHKMMGVLLQCSAILVKEKGILQGCNQ 428

Query: 189 TAATYLFQQDKFYDVSFDTGDKSVQCGRKVDAFKLWLMWKARGNLGFRHFVDNAVDCSR 247
             A YLFQ DK YDVS+DTGDK++QCGR VD FK WLMWKA+G +GF + ++  ++ + 
Sbjct: 429 MCAGYLFQPDKQYDVSYDTGDKAIQCGRHVDIFKFWLMWKAKGTVGFENQINKCLELAE 487

Catalyzes the production of GABA.

Rattus norvegicus (taxid: 10116)

EC: 4

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: 1

EC: 5

>sp|P48319|DCE1_PIG Glutamate decarboxylase 1 OS=Sus scrofa GN=GAD1 PE=2 SV=1

 Score =  301 bits (771), Expect = 7e-81,   Method: Compositional matrix adjust.
 Identities = 139/239 (58%), Positives = 177/239 (74%)

Query: 9   PGGSISNMYSICLARYRLDPDTKRKGLSHLPPLCMFTSEDSHYSMLKAAHWLGIGMDNVI 68
           PGG+ISNMYSI  ARY+  P+ K KG++ +P L +FTSE SHYS+ KA   LG G DNVI
Sbjct: 250 PGGAISNMYSIMAARYKYFPEVKTKGMAAVPKLVLFTSEHSHYSIKKAGAALGFGTDNVI 309

Query: 69  RVKTNERGQMICSFLEQTIQTSLAEKKIPLFVNATAGTTVLGAFDPLDEIATVCEKYDLW 128
            +K NERG++I + LE  I  +  +  IPL+VNATAGTTV GAFDP+ EIA +CEKY+LW
Sbjct: 310 LIKCNERGKIIPADLEAKILEAKQKGYIPLYVNATAGTTVYGAFDPIQEIADICEKYNLW 369

Query: 129 MHVDACWGGSLIFSEKYSFVLKGINRANSVSWNPHKMLGAPLQCSILLIKEKGLLHQANA 188
           +HVDA WGG L+ S K+   L GI RA+SV+WNPHKM+G  LQCS +L+KEKG+L   N 
Sbjct: 370 LHVDAAWGGGLLMSRKHRHKLSGIERADSVTWNPHKMMGVLLQCSAILVKEKGILQGCNQ 429

Query: 189 TAATYLFQQDKFYDVSFDTGDKSVQCGRKVDAFKLWLMWKARGNLGFRHFVDNAVDCSR 247
             A YLFQ DK YDVS+DTGDK++QCGR VD FK WLMWKA+G +GF + ++  ++ + 
Sbjct: 430 MCAGYLFQPDKQYDVSYDTGDKAIQCGRHVDIFKFWLMWKAKGTVGFENQINKCLELAE 488

Catalyzes the production of GABA.

Sus scrofa (taxid: 9823)

EC: 4

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: 1

EC: 5

>sp|Q5IS68|DCE1_PANTR Glutamate decarboxylase 1 OS=Pan troglodytes GN=GAD1 PE=2 SV=1

 Score =  300 bits (769), Expect = 1e-80,   Method: Compositional matrix adjust.
 Identities = 138/239 (57%), Positives = 174/239 (72%)

Query: 9   PGGSISNMYSICLARYRLDPDTKRKGLSHLPPLCMFTSEDSHYSMLKAAHWLGIGMDNVI 68
           PGG+ISNMYSI  ARY+  P+ K KG++ +P L +FTSE SHYS+ KA   LG G DNVI
Sbjct: 250 PGGAISNMYSIMAARYKYFPEVKTKGMAAVPKLVLFTSEQSHYSIKKAGAALGFGTDNVI 309

Query: 69  RVKTNERGQMICSFLEQTIQTSLAEKKIPLFVNATAGTTVLGAFDPLDEIATVCEKYDLW 128
            +K NERG++I +  E  I  +  +  +P +VNATAGTTV GAFDP+ EIA +CEKY+LW
Sbjct: 310 LIKCNERGKIIPADFEAKILEAKQKGYVPFYVNATAGTTVYGAFDPIQEIADICEKYNLW 369

Query: 129 MHVDACWGGSLIFSEKYSFVLKGINRANSVSWNPHKMLGAPLQCSILLIKEKGLLHQANA 188
           +HVDA WGG L+ S K+   L GI RANSV+WNPHKM+G  LQCS +LIKEKG+L   N 
Sbjct: 370 LHVDAAWGGGLLMSRKHRHKLNGIERANSVTWNPHKMMGVLLQCSAILIKEKGILQGCNQ 429

Query: 189 TAATYLFQQDKFYDVSFDTGDKSVQCGRKVDAFKLWLMWKARGNLGFRHFVDNAVDCSR 247
             A YLFQ DK YDVS+DTGDK++QCGR VD FK WLMWKA+G +GF   ++  ++ + 
Sbjct: 430 MCAGYLFQPDKQYDVSYDTGDKAIQCGRHVDIFKFWLMWKAKGTVGFESQINKCLELAE 488

Catalyzes the production of GABA.

Pan troglodytes (taxid: 9598)

EC: 4

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: 1

EC: 5

>sp|Q99259|DCE1_HUMAN Glutamate decarboxylase 1 OS=Homo sapiens GN=GAD1 PE=1 SV=1

 Score =  300 bits (769), Expect = 1e-80,   Method: Compositional matrix adjust.
 Identities = 137/239 (57%), Positives = 175/239 (73%)

Query: 9   PGGSISNMYSICLARYRLDPDTKRKGLSHLPPLCMFTSEDSHYSMLKAAHWLGIGMDNVI 68
           PGG+ISNMYSI  ARY+  P+ K KG++ +P L +FTSE SHYS+ KA   LG G DNVI
Sbjct: 250 PGGAISNMYSIMAARYKYFPEVKTKGMAAVPKLVLFTSEQSHYSIKKAGAALGFGTDNVI 309

Query: 69  RVKTNERGQMICSFLEQTIQTSLAEKKIPLFVNATAGTTVLGAFDPLDEIATVCEKYDLW 128
            +K NERG++I +  E  I  +  +  +P +VNATAGTTV GAFDP+ EIA +CEKY+LW
Sbjct: 310 LIKCNERGKIIPADFEAKILEAKQKGYVPFYVNATAGTTVYGAFDPIQEIADICEKYNLW 369

Query: 129 MHVDACWGGSLIFSEKYSFVLKGINRANSVSWNPHKMLGAPLQCSILLIKEKGLLHQANA 188
           +HVDA WGG L+ S K+   L GI RANSV+WNPHKM+G  LQCS +L+KEKG+L   N 
Sbjct: 370 LHVDAAWGGGLLMSRKHRHKLNGIERANSVTWNPHKMMGVLLQCSAILVKEKGILQGCNQ 429

Query: 189 TAATYLFQQDKFYDVSFDTGDKSVQCGRKVDAFKLWLMWKARGNLGFRHFVDNAVDCSR 247
             A YLFQ DK YDVS+DTGDK++QCGR VD FK WLMWKA+G +GF + ++  ++ + 
Sbjct: 430 MCAGYLFQPDKQYDVSYDTGDKAIQCGRHVDIFKFWLMWKAKGTVGFENQINKCLELAE 488

Catalyzes the production of GABA.

Homo sapiens (taxid: 9606)

EC: 4

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: 1

EC: 5

>sp|Q05329|DCE2_HUMAN Glutamate decarboxylase 2 OS=Homo sapiens GN=GAD2 PE=1 SV=1

 Score =  297 bits (760), Expect = 1e-79,   Method: Compositional matrix adjust.
 Identities = 134/239 (56%), Positives = 179/239 (74%)

Query: 9   PGGSISNMYSICLARYRLDPDTKRKGLSHLPPLCMFTSEDSHYSMLKAAHWLGIGMDNVI 68
           PGG+ISNMY++ +AR+++ P+ K KG++ LP L  FTSE SH+S+ K A  LGIG D+VI
Sbjct: 241 PGGAISNMYAMMIARFKMFPEVKEKGMAALPRLIAFTSEHSHFSLKKGAAALGIGTDSVI 300

Query: 69  RVKTNERGQMICSFLEQTIQTSLAEKKIPLFVNATAGTTVLGAFDPLDEIATVCEKYDLW 128
            +K +ERG+MI S LE+ I  +  +  +P  V+ATAGTTV GAFDPL  +A +C+KY +W
Sbjct: 301 LIKCDERGKMIPSDLERRILEAKQKGFVPFLVSATAGTTVYGAFDPLLAVADICKKYKIW 360

Query: 129 MHVDACWGGSLIFSEKYSFVLKGINRANSVSWNPHKMLGAPLQCSILLIKEKGLLHQANA 188
           MHVDA WGG L+ S K+ + L G+ RANSV+WNPHKM+G PLQCS LL++E+GL+   N 
Sbjct: 361 MHVDAAWGGGLLMSRKHKWKLSGVERANSVTWNPHKMMGVPLQCSALLVREEGLMQNCNQ 420

Query: 189 TAATYLFQQDKFYDVSFDTGDKSVQCGRKVDAFKLWLMWKARGNLGFRHFVDNAVDCSR 247
             A+YLFQQDK YD+S+DTGDK++QCGR VD FKLWLMW+A+G  GF   VD  ++ + 
Sbjct: 421 MHASYLFQQDKHYDLSYDTGDKALQCGRHVDVFKLWLMWRAKGTTGFEAHVDKCLELAE 479

Catalyzes the production of GABA.

Homo sapiens (taxid: 9606)

EC: 4

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: 1

EC: 5

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	448
242014734	490	Cysteine sulfinic acid decarboxylase, pu	0.533	0.487	0.669	6e-96
353282221	483	putative sulfinoalanine decarboxylase [B	0.578	0.536	0.579	3e-91
158290996	521	AGAP002425-PA [Anopheles gambiae str. PE	0.537	0.462	0.623	2e-88
170030815	426	glutamate decarboxylase [Culex quinquefa	0.535	0.563	0.632	2e-88
357603536	483	putative Cysteine sulfinic acid decarbox	0.529	0.490	0.623	6e-88
157127833	425	glutamate decarboxylase [Aedes aegypti]	0.535	0.564	0.607	6e-87
270015020	481	hypothetical protein TcasGA2_TC014177 [T	0.535	0.498	0.584	6e-87
312382144	536	hypothetical protein AND_05280 [Anophele	0.540	0.451	0.620	7e-87
91082587	484	PREDICTED: similar to AGAP002425-PA [Tri	0.531	0.491	0.596	3e-86
156554433	488	PREDICTED: cysteine sulfinic acid decarb	0.537	0.493	0.622	5e-86

>gi|242014734|ref|XP_002428040.1| Cysteine sulfinic acid decarboxylase, putative [Pediculus humanus corporis] gi|212512559|gb|EEB15302.1| Cysteine sulfinic acid decarboxylase, putative [Pediculus humanus corporis]

 Score =  357 bits (916), Expect = 6e-96,   Method: Compositional matrix adjust.
 Identities = 160/239 (66%), Positives = 200/239 (83%)

Query: 9   PGGSISNMYSICLARYRLDPDTKRKGLSHLPPLCMFTSEDSHYSMLKAAHWLGIGMDNVI 68
           PGGS++NMY++ LARY+L+PD K+KG+  +  L  FTSEDSHYS++K  +W+GIG+DNVI
Sbjct: 144 PGGSLNNMYAMVLARYKLNPDIKKKGVYCMNKLVAFTSEDSHYSIMKGVNWIGIGIDNVI 203

Query: 69  RVKTNERGQMICSFLEQTIQTSLAEKKIPLFVNATAGTTVLGAFDPLDEIATVCEKYDLW 128
           ++KT++ G+MI   LE+ I  +  E ++P FVN TAGTTVLGAFDP++ I  +C KY+LW
Sbjct: 204 KIKTDDFGKMIPDHLEKMIIKTKEEGRVPFFVNVTAGTTVLGAFDPIEIINDICSKYNLW 263

Query: 129 MHVDACWGGSLIFSEKYSFVLKGINRANSVSWNPHKMLGAPLQCSILLIKEKGLLHQANA 188
           MHVDACWGGSL+FS+KYS VLKG+N+A+SVSWNPHKMLGAPLQCSI L K K +LH+ N+
Sbjct: 264 MHVDACWGGSLLFSKKYSKVLKGLNKADSVSWNPHKMLGAPLQCSIFLTKHKEILHECNS 323

Query: 189 TAATYLFQQDKFYDVSFDTGDKSVQCGRKVDAFKLWLMWKARGNLGFRHFVDNAVDCSR 247
            +ATYLFQQDKFYDVS+DTGDKSVQCGRKVD FKLWLMWKARG+ GF   VD A++CSR
Sbjct: 324 ASATYLFQQDKFYDVSYDTGDKSVQCGRKVDCFKLWLMWKARGDTGFEKLVDQAMECSR 382

Source: Pediculus humanus corporis

Species: Pediculus humanus

Genus: Pediculus

Family: Pediculidae

Order: Phthiraptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|353282221|gb|AEQ77284.1| putative sulfinoalanine decarboxylase [Bicyclus anynana]

 Score =  342 bits (877), Expect = 3e-91,   Method: Compositional matrix adjust.
 Identities = 156/269 (57%), Positives = 201/269 (74%), Gaps = 10/269 (3%)

Query: 9   PGGSISNMYSICLARYRLDPDTKRKGLSHLPPLCMFTSEDSHYSMLKAAHWLGIGMDNVI 68
           PGGSIS +Y++  A  +  P+ KR G+  LP + + TSEDSHYS+LKAAHWLG G++NV 
Sbjct: 134 PGGSISMLYALVAAASKAFPEVKRIGMGGLPEMVIVTSEDSHYSILKAAHWLGFGIENVK 193

Query: 69  RVKTNERGQMICSFLEQTIQTSLAEKKIPLFVNATAGTTVLGAFDPLDEIATVCEKYDLW 128
            +KTN+ GQM  + LE T+Q  LA  + PL VNATAGTTVLGA D L+ +A +CEKY +W
Sbjct: 194 VIKTNDHGQMSATDLENTLQQELALGRTPLMVNATAGTTVLGAIDDLENVAAICEKYGVW 253

Query: 129 MHVDACWGGSLIFSEKYSFVLKGINRANSVSWNPHKMLGAPLQCSILLIKEKGLLHQANA 188
           MHVDACWGGSLI S+KY   LKGINRA+S+SWNPHKM+G PLQCS+ L++EKG+LH+AN+
Sbjct: 254 MHVDACWGGSLILSKKYRSKLKGINRASSISWNPHKMMGVPLQCSVFLLREKGVLHEANS 313

Query: 189 TAATYLFQQDKFYDVSFDTGDKSVQCGRKVDAFKLWLMWKARGNLGFRHFVDNAVDCSRG 248
            AA YLFQQDKFYDVS+DTGDKS+QCGRK+DAFKLW++WKARG++G  H  D+ ++ +  
Sbjct: 314 AAAQYLFQQDKFYDVSYDTGDKSIQCGRKIDAFKLWMIWKARGDIGLNHLTDHVMEIAE- 372

Query: 249 SMTFSTLLCFDLQGLLHQANATAATYLFQ 277
                    F +Q + H++N    T   Q
Sbjct: 373 ---------FCIQTVAHRSNFRLVTMHMQ 392

Source: Bicyclus anynana

Species: Bicyclus anynana

Genus: Bicyclus

Family: Nymphalidae

Order: Lepidoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|158290996|ref|XP_312520.4| AGAP002425-PA [Anopheles gambiae str. PEST] gi|157018163|gb|EAA07530.4| AGAP002425-PA [Anopheles gambiae str. PEST]

 Score =  332 bits (852), Expect = 2e-88,   Method: Compositional matrix adjust.
 Identities = 151/242 (62%), Positives = 189/242 (78%), Gaps = 1/242 (0%)

Query: 6   FLLPGGSISNMYSICLARYRLDPDTKRKGLSHLP-PLCMFTSEDSHYSMLKAAHWLGIGM 64
            L PGGS+SNMY++  ARYR  PD KR G+++LP PL +FTSED+HYS+ K  HWLGIG+
Sbjct: 169 ILCPGGSMSNMYAMVAARYRTVPDVKRIGVANLPEPLVVFTSEDAHYSITKGVHWLGIGL 228

Query: 65  DNVIRVKTNERGQMICSFLEQTIQTSLAEKKIPLFVNATAGTTVLGAFDPLDEIATVCEK 124
           +N+++VK++ RG MI   LEQ IQ+ L   + P FVNATAGTTVLGAFD  + IA VC++
Sbjct: 229 NNLVKVKSDRRGCMIPEQLEQAIQSVLDSGRKPFFVNATAGTTVLGAFDDFNRIADVCQR 288

Query: 125 YDLWMHVDACWGGSLIFSEKYSFVLKGINRANSVSWNPHKMLGAPLQCSILLIKEKGLLH 184
           Y +W+H+DAC GG+ + S ++  +L G NRA S++WNPHK LGAPLQCSI LIKE+GLLH
Sbjct: 289 YGVWLHIDACLGGTAVLSHRHKHLLAGANRAQSLAWNPHKTLGAPLQCSIFLIKERGLLH 348

Query: 185 QANATAATYLFQQDKFYDVSFDTGDKSVQCGRKVDAFKLWLMWKARGNLGFRHFVDNAVD 244
           + NA  A YLFQQDKFYD+S+DTGDKSVQCGRKVDAFK WLM+KARG+ G    VDNA  
Sbjct: 349 ECNAAKADYLFQQDKFYDISYDTGDKSVQCGRKVDAFKFWLMYKARGSAGLESLVDNAFA 408

Query: 245 CS 246
           C+
Sbjct: 409 CA 410

Source: Anopheles gambiae str. PEST

Species: Anopheles gambiae

Genus: Anopheles

Family: Culicidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|170030815|ref|XP_001843283.1| glutamate decarboxylase [Culex quinquefasciatus] gi|167868402|gb|EDS31785.1| glutamate decarboxylase [Culex quinquefasciatus]

 Score =  332 bits (852), Expect = 2e-88,   Method: Compositional matrix adjust.
 Identities = 153/242 (63%), Positives = 189/242 (78%)

Query: 6   FLLPGGSISNMYSICLARYRLDPDTKRKGLSHLPPLCMFTSEDSHYSMLKAAHWLGIGMD 65
            L PGGSISNMY++  ARYR  P  KR GL++ P L  FTSED+HYS+ KA HWLGIG+D
Sbjct: 134 ILSPGGSISNMYAMVAARYRALPGVKRTGLANQPTLVAFTSEDAHYSIKKAVHWLGIGID 193

Query: 66  NVIRVKTNERGQMICSFLEQTIQTSLAEKKIPLFVNATAGTTVLGAFDPLDEIATVCEKY 125
           N++ V+T+  G MI   LE+ I T LA  + P FVN+TAGTTVLGAFDP + IA +CE++
Sbjct: 194 NLVLVRTDPGGCMIPEELEKAIGTVLASGRKPFFVNSTAGTTVLGAFDPFERIAAICERH 253

Query: 126 DLWMHVDACWGGSLIFSEKYSFVLKGINRANSVSWNPHKMLGAPLQCSILLIKEKGLLHQ 185
           +LW+HVD+C GGS I S K+S +L G+ RA+S++WNPHK LGAPLQCSI L+K KGLLH+
Sbjct: 254 NLWLHVDSCLGGSAILSRKHSHLLAGVERADSLAWNPHKTLGAPLQCSIFLLKHKGLLHE 313

Query: 186 ANATAATYLFQQDKFYDVSFDTGDKSVQCGRKVDAFKLWLMWKARGNLGFRHFVDNAVDC 245
            N+  A YLFQQDKFYDVS+DTGDKSVQCGRKVDAFK+WLM+KARG+ G    V+NA DC
Sbjct: 314 CNSANADYLFQQDKFYDVSYDTGDKSVQCGRKVDAFKIWLMFKARGDRGLAELVENAFDC 373

Query: 246 SR 247
           + 
Sbjct: 374 AE 375

Source: Culex quinquefasciatus

Species: Culex quinquefasciatus

Genus: Culex

Family: Culicidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|357603536|gb|EHJ63821.1| putative Cysteine sulfinic acid decarboxylase [Danaus plexippus]

 Score =  330 bits (847), Expect = 6e-88,   Method: Compositional matrix adjust.
 Identities = 149/239 (62%), Positives = 188/239 (78%)

Query: 9   PGGSISNMYSICLARYRLDPDTKRKGLSHLPPLCMFTSEDSHYSMLKAAHWLGIGMDNVI 68
           PGGS+S +Y++  AR++  P+ K KG+  LP + +FTSEDSHYS++KAAHWLG G ++VI
Sbjct: 134 PGGSVSMLYALVAARFKKFPEVKSKGMQKLPEMTIFTSEDSHYSIIKAAHWLGFGTESVI 193

Query: 69  RVKTNERGQMICSFLEQTIQTSLAEKKIPLFVNATAGTTVLGAFDPLDEIATVCEKYDLW 128
            +KTN  GQMI + L + I+  L   K P+FVNATAGTTVLGA D L+ IA+VC+KYD+W
Sbjct: 194 SIKTNSSGQMIVNELNKAIERQLGLGKYPVFVNATAGTTVLGAIDDLEAIASVCKKYDIW 253

Query: 129 MHVDACWGGSLIFSEKYSFVLKGINRANSVSWNPHKMLGAPLQCSILLIKEKGLLHQANA 188
           MHVDACWGG L+ S      L+GI  A+S+SWNPHKM+GAPLQCSI L+KEKGLLH+ANA
Sbjct: 254 MHVDACWGGGLMLSATLRKRLQGIQFADSISWNPHKMIGAPLQCSIFLLKEKGLLHEANA 313

Query: 189 TAATYLFQQDKFYDVSFDTGDKSVQCGRKVDAFKLWLMWKARGNLGFRHFVDNAVDCSR 247
            AA YLFQQDKFYDV +DTGDKSVQCGRK+D+FKLW+MWKARG++G    +D+ +  S 
Sbjct: 314 AAAQYLFQQDKFYDVRYDTGDKSVQCGRKIDSFKLWMMWKARGDIGLCKVMDHVMSISE 372

Source: Danaus plexippus

Species: Danaus plexippus

Genus: Danaus

Family: Nymphalidae

Order: Lepidoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|157127833|ref|XP_001661202.1| glutamate decarboxylase [Aedes aegypti] gi|108872784|gb|EAT37009.1| AAEL010951-PA [Aedes aegypti]

 Score =  327 bits (839), Expect = 6e-87,   Method: Compositional matrix adjust.
 Identities = 147/242 (60%), Positives = 188/242 (77%)

Query: 6   FLLPGGSISNMYSICLARYRLDPDTKRKGLSHLPPLCMFTSEDSHYSMLKAAHWLGIGMD 65
            L PGGSISNMY++  AR+R  PD KR GL++ P L  FTSE++HYS+ KA HWLGIG+D
Sbjct: 134 ILSPGGSISNMYAMVAARFRALPDVKRTGLANQPTLVAFTSEEAHYSIKKAVHWLGIGID 193

Query: 66  NVIRVKTNERGQMICSFLEQTIQTSLAEKKIPLFVNATAGTTVLGAFDPLDEIATVCEKY 125
           N++ VKT+ RG+MI   LE++I+  +   + P F+N+TAGTTVLGAFDP   IA +C+KY
Sbjct: 194 NLVLVKTDCRGRMIPDELEKSIEAVIESGRKPFFLNSTAGTTVLGAFDPFGRIADICQKY 253

Query: 126 DLWMHVDACWGGSLIFSEKYSFVLKGINRANSVSWNPHKMLGAPLQCSILLIKEKGLLHQ 185
           +LWMH+D C GG+ I S   +++L G  RA+S +WNPHK LGAPLQCS+ ++K+KGLLH+
Sbjct: 254 NLWMHIDGCLGGTAILSSNKTYLLAGSERADSFAWNPHKTLGAPLQCSVFILKQKGLLHE 313

Query: 186 ANATAATYLFQQDKFYDVSFDTGDKSVQCGRKVDAFKLWLMWKARGNLGFRHFVDNAVDC 245
            NA  A YLFQQDKFYD+S+DTGDKSVQCGRKVDA K+WLM+KARG  G +  VDNA DC
Sbjct: 314 CNAANADYLFQQDKFYDISYDTGDKSVQCGRKVDALKIWLMFKARGMSGLQALVDNAFDC 373

Query: 246 SR 247
           +R
Sbjct: 374 AR 375

Source: Aedes aegypti

Species: Aedes aegypti

Genus: Aedes

Family: Culicidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|270015020|gb|EFA11468.1| hypothetical protein TcasGA2_TC014177 [Tribolium castaneum]

 Score =  327 bits (839), Expect = 6e-87,   Method: Compositional matrix adjust.
 Identities = 142/243 (58%), Positives = 190/243 (78%)

Query: 9   PGGSISNMYSICLARYRLDPDTKRKGLSHLPPLCMFTSEDSHYSMLKAAHWLGIGMDNVI 68
           PGGSISNMY + LARY+  P+TK KGL  LP L  FTSE+ HYS+ K+A WLG+G DN++
Sbjct: 138 PGGSISNMYGMVLARYKKFPETKTKGLHGLPVLVAFTSEEGHYSLQKSAQWLGLGTDNLV 197

Query: 69  RVKTNERGQMICSFLEQTIQTSLAEKKIPLFVNATAGTTVLGAFDPLDEIATVCEKYDLW 128
           ++KT+  G+MI   LE+ I +  A+  +P FVNATAGTTV+GA DPLD+IA +CE++ LW
Sbjct: 198 KIKTDNFGRMIAEELEKAIISRKAQGHVPFFVNATAGTTVVGAIDPLDKIADICERHQLW 257

Query: 129 MHVDACWGGSLIFSEKYSFVLKGINRANSVSWNPHKMLGAPLQCSILLIKEKGLLHQANA 188
           +H+DAC+GG+L+ S+ +   L+  +R++S +WNPHKMLGAPLQCSI + +   +LH+ N+
Sbjct: 258 LHIDACYGGTLLLSKNFKERLEASHRSDSFAWNPHKMLGAPLQCSIFITRHNNILHECNS 317

Query: 189 TAATYLFQQDKFYDVSFDTGDKSVQCGRKVDAFKLWLMWKARGNLGFRHFVDNAVDCSRG 248
            +A YLFQQDKFYDVS+DTGDKS+QCGRKVD FKLW+MWKARG  GF   VDNA+DC++ 
Sbjct: 318 ASAVYLFQQDKFYDVSYDTGDKSIQCGRKVDGFKLWVMWKARGKAGFASLVDNAIDCAKS 377

Query: 249 SMT 251
            ++
Sbjct: 378 KIS 380

Source: Tribolium castaneum

Species: Tribolium castaneum

Genus: Tribolium

Family: Tenebrionidae

Order: Coleoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|312382144|gb|EFR27700.1| hypothetical protein AND_05280 [Anopheles darlingi]

 Score =  327 bits (838), Expect = 7e-87,   Method: Compositional matrix adjust.
 Identities = 152/245 (62%), Positives = 190/245 (77%), Gaps = 3/245 (1%)

Query: 6   FLLPGGSISNMYSICLARYRLDPDTKRKGLSHLP-PLCMFTSEDSHYSMLKAAHWLGIGM 64
            L PGGS+SNMY+I  AR+R  PD KR G+++LP PL +FTSED+HYS+ KA HWLGIGM
Sbjct: 156 ILCPGGSMSNMYAIVAARFRAVPDVKRTGVTNLPAPLVVFTSEDAHYSITKAVHWLGIGM 215

Query: 65  DNVIRVKTNERGQMICSFLEQTIQTSLAEKKIPLFVNATAGTTVLGAFDPLDEIATVCEK 124
           +N+I+VKT+  G+MI   LE+ I++ +A  + P FVNATAGTTVLGAFD    IA +C +
Sbjct: 216 NNLIQVKTDCAGRMIPEELERAIESVIASGRRPFFVNATAGTTVLGAFDDFSAIADICAR 275

Query: 125 Y--DLWMHVDACWGGSLIFSEKYSFVLKGINRANSVSWNPHKMLGAPLQCSILLIKEKGL 182
           Y   LW+HVDAC GG+ I S  +  +L G+ RA S++WNPHK LGAPLQCS+L+++E+GL
Sbjct: 276 YAGGLWLHVDACLGGTAILSRTHRNLLAGVQRAQSLAWNPHKTLGAPLQCSVLVVQERGL 335

Query: 183 LHQANATAATYLFQQDKFYDVSFDTGDKSVQCGRKVDAFKLWLMWKARGNLGFRHFVDNA 242
           LH+ NA  A YLFQQDKFYD+S+DTGDKSVQCGRKVDAFK WLM+KARG  G    VDNA
Sbjct: 336 LHECNAANADYLFQQDKFYDISYDTGDKSVQCGRKVDAFKFWLMYKARGETGLESLVDNA 395

Query: 243 VDCSR 247
            +CSR
Sbjct: 396 FECSR 400

Source: Anopheles darlingi

Species: Anopheles darlingi

Genus: Anopheles

Family: Culicidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|91082587|ref|XP_967423.1| PREDICTED: similar to AGAP002425-PA [Tribolium castaneum]

 Score =  325 bits (833), Expect = 3e-86,   Method: Compositional matrix adjust.
 Identities = 142/238 (59%), Positives = 187/238 (78%)

Query: 9   PGGSISNMYSICLARYRLDPDTKRKGLSHLPPLCMFTSEDSHYSMLKAAHWLGIGMDNVI 68
           PGGSISNMY + LARY+  P+TK KGL  LP L  FTSE+ HYS+ K+A WLG+G DN++
Sbjct: 138 PGGSISNMYGMVLARYKKFPETKTKGLHGLPVLVAFTSEEGHYSLQKSAQWLGLGTDNLV 197

Query: 69  RVKTNERGQMICSFLEQTIQTSLAEKKIPLFVNATAGTTVLGAFDPLDEIATVCEKYDLW 128
           ++KT+  G+MI   LE+ I +  A+  +P FVNATAGTTV+GA DPLD+IA +CE++ LW
Sbjct: 198 KIKTDNFGRMIAEELEKAIISRKAQGHVPFFVNATAGTTVVGAIDPLDKIADICERHQLW 257

Query: 129 MHVDACWGGSLIFSEKYSFVLKGINRANSVSWNPHKMLGAPLQCSILLIKEKGLLHQANA 188
           +H+DAC+GG+L+ S+ +   L+  +R++S +WNPHKMLGAPLQCSI + +   +LH+ N+
Sbjct: 258 LHIDACYGGTLLLSKNFKERLEASHRSDSFAWNPHKMLGAPLQCSIFITRHNNILHECNS 317

Query: 189 TAATYLFQQDKFYDVSFDTGDKSVQCGRKVDAFKLWLMWKARGNLGFRHFVDNAVDCS 246
            +A YLFQQDKFYDVS+DTGDKS+QCGRKVD FKLW+MWKARG  GF   VDNA+DC+
Sbjct: 318 ASAVYLFQQDKFYDVSYDTGDKSIQCGRKVDGFKLWVMWKARGKAGFASLVDNAIDCA 375

Source: Tribolium castaneum

Species: Tribolium castaneum

Genus: Tribolium

Family: Tenebrionidae

Order: Coleoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|156554433|ref|XP_001600163.1| PREDICTED: cysteine sulfinic acid decarboxylase-like [Nasonia vitripennis]

 Score =  324 bits (831), Expect = 5e-86,   Method: Compositional matrix adjust.
 Identities = 150/241 (62%), Positives = 180/241 (74%)

Query: 6   FLLPGGSISNMYSICLARYRLDPDTKRKGLSHLPPLCMFTSEDSHYSMLKAAHWLGIGMD 65
            L PGGS+SNMY + LARYR  P +KR G++  PPL  FTSED HYSM K AHWLG+G D
Sbjct: 137 ILSPGGSLSNMYGMVLARYRYFPQSKRTGMTACPPLAYFTSEDGHYSMSKGAHWLGLGTD 196

Query: 66  NVIRVKTNERGQMICSFLEQTIQTSLAEKKIPLFVNATAGTTVLGAFDPLDEIATVCEKY 125
           N+ +VKT++ G+M  S L   I  +      P+FVNATAGTTVL AFDP+DEIA VC + 
Sbjct: 197 NIFKVKTDKLGRMDVSDLRAKIAEARDRGCKPIFVNATAGTTVLAAFDPIDEIANVCREE 256

Query: 126 DLWMHVDACWGGSLIFSEKYSFVLKGINRANSVSWNPHKMLGAPLQCSILLIKEKGLLHQ 185
           DLW+H+DAC GG+L+ S+K+   L+GI ++NSV+WNPHKMLGAP QCSI L+K K  LH+
Sbjct: 257 DLWLHIDACLGGTLLLSQKHRDRLRGIEKSNSVAWNPHKMLGAPFQCSIFLVKGKNALHE 316

Query: 186 ANATAATYLFQQDKFYDVSFDTGDKSVQCGRKVDAFKLWLMWKARGNLGFRHFVDNAVDC 245
           AN   A YLFQQDKFYDVS+DTGDKSVQCGRK DA K WLMWKARG  G R  VD A+D 
Sbjct: 317 ANCAGAKYLFQQDKFYDVSWDTGDKSVQCGRKTDAMKFWLMWKARGTAGLRRSVDVAMDA 376

Query: 246 S 246
           +
Sbjct: 377 A 377

Source: Nasonia vitripennis

Species: Nasonia vitripennis

Genus: Nasonia

Family: Pteromalidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	448
UNIPROTKB|F1LPX2	471	Csad "Cysteine sulfinic acid d	0.399	0.380	0.486	1.1e-80
UNIPROTKB|Q9YI58	590	GAD67 "Glutamate decarboxylase	0.526	0.4	0.593	3.1e-76
UNIPROTKB|A0PA85	594	GAD1 "Glutamate decarboxylase	0.526	0.397	0.588	1e-75
UNIPROTKB|F1PRT3	594	GAD1 "Glutamate decarboxylase	0.526	0.397	0.588	1e-75
UNIPROTKB|J9P2A8	595	GAD1 "Glutamate decarboxylase	0.526	0.396	0.588	1e-75
MGI|MGI:95632	593	Gad1 "glutamate decarboxylase	0.526	0.397	0.588	1.3e-75
RGD|2652	593	Gad1 "glutamate decarboxylase	0.526	0.397	0.588	1.7e-75
UNIPROTKB|Q0VCA1	594	GAD1 "Glutamate decarboxylase	0.526	0.397	0.584	2.1e-75
UNIPROTKB|P48319	594	GAD1 "Glutamate decarboxylase	0.526	0.397	0.588	3.5e-75
ZFIN|ZDB-GENE-030909-3	613	gad1b "glutamate decarboxylase	0.473	0.345	0.556	4.1e-75

UNIPROTKB|F1LPX2 Csad "Cysteine sulfinic acid decarboxylase" [Rattus norvegicus (taxid:10116)]

 Score = 451 (163.8 bits), Expect = 1.1e-80, Sum P(2) = 1.1e-80
 Identities = 90/185 (48%), Positives = 122/185 (65%)

Query:   253 STLLCFDLQGLLHQANATAATYLFQQDKFYDVSFDTGDKSVQCGRKVDAFKLWLMWKARG 312
             S LL  D   LL + + + A+YLFQQDKFY+V+ DTGDK VQCGR+VD  KLWLMWKA+G
Sbjct:   292 SALLLRDTSNLLKRCHGSQASYLFQQDKFYNVALDTGDKVVQCGRRVDCLKLWLMWKAQG 351

Query:   313 NLGFRHFVDNAVDCSRYFLSQISQRPGFRLVI-PEFQCTNICFWFIPVSLRDKVEDETWW 371
               G    +D A   +RY + +I +R GF LV+ PEF   N+CFWF+P SLR K E   + 
Sbjct:   352 GQGLEWRIDQAFALTRYLVEEIKKREGFELVMEPEF--VNVCFWFVPPSLRGKKESPDYS 409

Query:   372 STLSKVAPRIKEKLVLGGTLMIGYQPLQHRNLHNFFRLVTTCHPASSRQDMDYAIDQIEL 431
               LS+VAP +KE++V  GT+MIGYQP  H    NFFR+V   +P   + D+D+ + ++E 
Sbjct:   410 QRLSQVAPVLKERMVKKGTMMIGYQP--HGTRANFFRMVVA-NPILVQADIDFLLGELER 466

Query:   432 RGAEV 436
              G ++
Sbjct:   467 LGQDL 471

GO:0016831 "carboxy-lyase activity" evidence=IEA

GO:0019752 "carboxylic acid metabolic process" evidence=IEA

GO:0030170 "pyridoxal phosphate binding" evidence=IEA

UNIPROTKB|Q9YI58 GAD67 "Glutamate decarboxylase 67" [Gallus gallus (taxid:9031)]

 Score = 768 (275.4 bits), Expect = 3.1e-76, P = 3.1e-76
 Identities = 140/236 (59%), Positives = 177/236 (75%)

Query:     9 PGGSISNMYSICLARYRLDPDTKRKGLSHLPPLCMFTSEDSHYSMLKAAHWLGIGMDNVI 68
             PGG+ISNMYSI  ARY+  P+ K KG++ +P L +FTSE SHYS+ KA   LG G DNVI
Sbjct:   246 PGGAISNMYSIMAARYKYFPEVKTKGMAAVPKLVLFTSEHSHYSIKKAGAALGFGTDNVI 305

Query:    69 RVKTNERGQMICSFLEQTIQTSLAEKKIPLFVNATAGTTVLGAFDPLDEIATVCEKYDLW 128
              +K NERG++I + LE  I  +  +  +PLFVNATAGTTV GAFDP+ EIA +CEKY+LW
Sbjct:   306 LIKCNERGKIIPADLEAKILEAKQKGYVPLFVNATAGTTVYGAFDPIQEIADICEKYNLW 365

Query:   129 MHVDACWGGSLIFSEKYSFVLKGINRANSVSWNPHKMLGAPLQCSILLIKEKGLLHQANA 188
             +HVDA WGG L+ S K+   L GI RANSV+WNPHKM+G  LQCS +L++EKG+L   N 
Sbjct:   366 LHVDAAWGGGLLMSRKHRHKLNGIERANSVTWNPHKMMGVLLQCSAILVREKGILQGCNQ 425

Query:   189 TAATYLFQQDKFYDVSFDTGDKSVQCGRKVDAFKLWLMWKARGNLGFRHFVDNAVD 244
               A YLFQQDK YDVS+DTGDK++QCGR VD FK WLMWKA+G +GF + ++  ++
Sbjct:   426 MCAGYLFQQDKQYDVSYDTGDKAIQCGRHVDIFKFWLMWKAKGTVGFENQINKCLE 481

GO:0016831 "carboxy-lyase activity" evidence=IEA

GO:0019752 "carboxylic acid metabolic process" evidence=IEA

GO:0030170 "pyridoxal phosphate binding" evidence=IEA

GO:0005622 "intracellular" evidence=IEA

UNIPROTKB|A0PA85 GAD1 "Glutamate decarboxylase 1" [Canis lupus familiaris (taxid:9615)]

 Score = 763 (273.6 bits), Expect = 1.0e-75, P = 1.0e-75
 Identities = 139/236 (58%), Positives = 176/236 (74%)

Query:     9 PGGSISNMYSICLARYRLDPDTKRKGLSHLPPLCMFTSEDSHYSMLKAAHWLGIGMDNVI 68
             PGG+ISNMYSI  ARY+  P+ K KG++ +P L +FTSE SHYS+ KA   LG G DNVI
Sbjct:   250 PGGAISNMYSIMAARYKFFPEVKTKGMAAVPKLVLFTSEHSHYSIKKAGAALGFGTDNVI 309

Query:    69 RVKTNERGQMICSFLEQTIQTSLAEKKIPLFVNATAGTTVLGAFDPLDEIATVCEKYDLW 128
              +K NERG++I + LE  I  +  +  +PL+VNATAGTTV GAFDP+ EIA +CEKY+LW
Sbjct:   310 LIKCNERGKIIPADLEAKILEAKQKGYVPLYVNATAGTTVYGAFDPIQEIADICEKYNLW 369

Query:   129 MHVDACWGGSLIFSEKYSFVLKGINRANSVSWNPHKMLGAPLQCSILLIKEKGLLHQANA 188
             +HVDA WGG L+ S K+   L GI RANSV+WNPHKM+G  LQCS +L+KEKG+L   N 
Sbjct:   370 LHVDAAWGGGLLMSRKHRHKLSGIERANSVTWNPHKMMGVLLQCSAILVKEKGILQGCNQ 429

Query:   189 TAATYLFQQDKFYDVSFDTGDKSVQCGRKVDAFKLWLMWKARGNLGFRHFVDNAVD 244
               A YLFQ DK YDVS+DTGDK++QCGR VD FK WLMWKA+G +GF + ++  ++
Sbjct:   430 MCAGYLFQPDKQYDVSYDTGDKAIQCGRHVDIFKFWLMWKAKGTVGFENQINKCLE 485

GO:0004351 "glutamate decarboxylase activity" evidence=IEA

GO:0042136 "neurotransmitter biosynthetic process" evidence=IEA

GO:0030170 "pyridoxal phosphate binding" evidence=IEA

GO:0019752 "carboxylic acid metabolic process" evidence=IEA

UNIPROTKB|F1PRT3 GAD1 "Glutamate decarboxylase 1" [Canis lupus familiaris (taxid:9615)]

 Score = 763 (273.6 bits), Expect = 1.0e-75, P = 1.0e-75
 Identities = 139/236 (58%), Positives = 176/236 (74%)

Query:     9 PGGSISNMYSICLARYRLDPDTKRKGLSHLPPLCMFTSEDSHYSMLKAAHWLGIGMDNVI 68
             PGG+ISNMYSI  ARY+  P+ K KG++ +P L +FTSE SHYS+ KA   LG G DNVI
Sbjct:   249 PGGAISNMYSIMAARYKFFPEVKTKGMAAVPKLVLFTSEHSHYSIKKAGAALGFGTDNVI 308

Query:    69 RVKTNERGQMICSFLEQTIQTSLAEKKIPLFVNATAGTTVLGAFDPLDEIATVCEKYDLW 128
              +K NERG++I + LE  I  +  +  +PL+VNATAGTTV GAFDP+ EIA +CEKY+LW
Sbjct:   309 LIKCNERGKIIPADLEAKILEAKQKGYVPLYVNATAGTTVYGAFDPIQEIADICEKYNLW 368

Query:   129 MHVDACWGGSLIFSEKYSFVLKGINRANSVSWNPHKMLGAPLQCSILLIKEKGLLHQANA 188
             +HVDA WGG L+ S K+   L GI RANSV+WNPHKM+G  LQCS +L+KEKG+L   N 
Sbjct:   369 LHVDAAWGGGLLMSRKHRHKLSGIERANSVTWNPHKMMGVLLQCSAILVKEKGILQGCNQ 428

Query:   189 TAATYLFQQDKFYDVSFDTGDKSVQCGRKVDAFKLWLMWKARGNLGFRHFVDNAVD 244
               A YLFQ DK YDVS+DTGDK++QCGR VD FK WLMWKA+G +GF + ++  ++
Sbjct:   429 MCAGYLFQPDKQYDVSYDTGDKAIQCGRHVDIFKFWLMWKAKGTVGFENQINKCLE 484

GO:0019752 "carboxylic acid metabolic process" evidence=IEA

GO:0016831 "carboxy-lyase activity" evidence=IEA

GO:0030170 "pyridoxal phosphate binding" evidence=IEA

UNIPROTKB|J9P2A8 GAD1 "Glutamate decarboxylase 1" [Canis lupus familiaris (taxid:9615)]

 Score = 763 (273.6 bits), Expect = 1.0e-75, P = 1.0e-75
 Identities = 139/236 (58%), Positives = 176/236 (74%)

Query:     9 PGGSISNMYSICLARYRLDPDTKRKGLSHLPPLCMFTSEDSHYSMLKAAHWLGIGMDNVI 68
             PGG+ISNMYSI  ARY+  P+ K KG++ +P L +FTSE SHYS+ KA   LG G DNVI
Sbjct:   250 PGGAISNMYSIMAARYKFFPEVKTKGMAAVPKLVLFTSEHSHYSIKKAGAALGFGTDNVI 309

Query:    69 RVKTNERGQMICSFLEQTIQTSLAEKKIPLFVNATAGTTVLGAFDPLDEIATVCEKYDLW 128
              +K NERG++I + LE  I  +  +  +PL+VNATAGTTV GAFDP+ EIA +CEKY+LW
Sbjct:   310 LIKCNERGKIIPADLEAKILEAKQKGYVPLYVNATAGTTVYGAFDPIQEIADICEKYNLW 369

Query:   129 MHVDACWGGSLIFSEKYSFVLKGINRANSVSWNPHKMLGAPLQCSILLIKEKGLLHQANA 188
             +HVDA WGG L+ S K+   L GI RANSV+WNPHKM+G  LQCS +L+KEKG+L   N 
Sbjct:   370 LHVDAAWGGGLLMSRKHRHKLSGIERANSVTWNPHKMMGVLLQCSAILVKEKGILQGCNQ 429

Query:   189 TAATYLFQQDKFYDVSFDTGDKSVQCGRKVDAFKLWLMWKARGNLGFRHFVDNAVD 244
               A YLFQ DK YDVS+DTGDK++QCGR VD FK WLMWKA+G +GF + ++  ++
Sbjct:   430 MCAGYLFQPDKQYDVSYDTGDKAIQCGRHVDIFKFWLMWKAKGTVGFENQINKCLE 485

GO:0030170 "pyridoxal phosphate binding" evidence=IEA

GO:0019752 "carboxylic acid metabolic process" evidence=IEA

GO:0016831 "carboxy-lyase activity" evidence=IEA

MGI|MGI:95632 Gad1 "glutamate decarboxylase 1" [Mus musculus (taxid:10090)]

 Score = 762 (273.3 bits), Expect = 1.3e-75, P = 1.3e-75
 Identities = 139/236 (58%), Positives = 176/236 (74%)

Query:     9 PGGSISNMYSICLARYRLDPDTKRKGLSHLPPLCMFTSEDSHYSMLKAAHWLGIGMDNVI 68
             PGG+ISNMYSI  ARY+  P+ K KG++ +P L +FTSE SHYS+ KA   LG G DNVI
Sbjct:   249 PGGAISNMYSIMAARYKYFPEVKTKGMAAVPKLVLFTSEHSHYSIKKAGAALGFGTDNVI 308

Query:    69 RVKTNERGQMICSFLEQTIQTSLAEKKIPLFVNATAGTTVLGAFDPLDEIATVCEKYDLW 128
              +K NERG++I + LE  I  +  +  +PL+VNATAGTTV GAFDP+ EIA +CEKY+LW
Sbjct:   309 LIKCNERGKIIPADLEAKILDAKQKGYVPLYVNATAGTTVYGAFDPIQEIADICEKYNLW 368

Query:   129 MHVDACWGGSLIFSEKYSFVLKGINRANSVSWNPHKMLGAPLQCSILLIKEKGLLHQANA 188
             +HVDA WGG L+ S K+   L GI RANSV+WNPHKM+G  LQCS +L+KEKG+L   N 
Sbjct:   369 LHVDAAWGGGLLMSRKHRHKLSGIERANSVTWNPHKMMGVLLQCSAILVKEKGILQGCNQ 428

Query:   189 TAATYLFQQDKFYDVSFDTGDKSVQCGRKVDAFKLWLMWKARGNLGFRHFVDNAVD 244
               A YLFQ DK YDVS+DTGDK++QCGR VD FK WLMWKA+G +GF + ++  ++
Sbjct:   429 MCAGYLFQPDKQYDVSYDTGDKAIQCGRHVDIFKFWLMWKAKGTVGFENQINKCLE 484

GO:0001701 "in utero embryonic development" evidence=IMP

GO:0001764 "neuron migration" evidence=IMP

GO:0003824 "catalytic activity" evidence=IEA

GO:0004351 "glutamate decarboxylase activity" evidence=ISO

GO:0005622 "intracellular" evidence=ISO

GO:0005737 "cytoplasm" evidence=IDA

GO:0005739 "mitochondrion" evidence=IDA

GO:0005938 "cell cortex" evidence=IDA

GO:0006915 "apoptotic process" evidence=IMP

GO:0009449 "gamma-aminobutyric acid biosynthetic process" evidence=ISO

GO:0016595 "glutamate binding" evidence=ISO

GO:0016829 "lyase activity" evidence=IEA

GO:0016831 "carboxy-lyase activity" evidence=IEA

GO:0019752 "carboxylic acid metabolic process" evidence=IEA

GO:0021696 "cerebellar cortex morphogenesis" evidence=IMP

GO:0021772 "olfactory bulb development" evidence=IMP

GO:0030170 "pyridoxal phosphate binding" evidence=ISO

GO:0030424 "axon" evidence=IDA

GO:0035108 "limb morphogenesis" evidence=IMP

GO:0035264 "multicellular organism growth" evidence=IMP

GO:0042136 "neurotransmitter biosynthetic process" evidence=IEA

GO:0043679 "axon terminus" evidence=IDA

GO:0044306 "neuron projection terminus" evidence=IDA

GO:0045202 "synapse" evidence=IDA

GO:0046982 "protein heterodimerization activity" evidence=ISO

GO:0047485 "protein N-terminus binding" evidence=ISO

GO:0048786 "presynaptic active zone" evidence=IDA

GO:0048854 "brain morphogenesis" evidence=IMP

GO:0061351 "neural precursor cell proliferation" evidence=IMP

RGD|2652 Gad1 "glutamate decarboxylase 1" [Rattus norvegicus (taxid:10116)]

 Score = 761 (272.9 bits), Expect = 1.7e-75, P = 1.7e-75
 Identities = 139/236 (58%), Positives = 176/236 (74%)

Query:     9 PGGSISNMYSICLARYRLDPDTKRKGLSHLPPLCMFTSEDSHYSMLKAAHWLGIGMDNVI 68
             PGG+ISNMYSI  ARY+  P+ K KG++ +P L +FTSE SHYS+ KA   LG G DNVI
Sbjct:   249 PGGAISNMYSIMAARYKYFPEVKTKGMAAVPKLVLFTSEHSHYSIKKAGAALGFGTDNVI 308

Query:    69 RVKTNERGQMICSFLEQTIQTSLAEKKIPLFVNATAGTTVLGAFDPLDEIATVCEKYDLW 128
              +K NERG++I + LE  I  +  +  +PL+VNATAGTTV GAFDP+ EIA +CEKY+LW
Sbjct:   309 LIKCNERGKIIPADLEAKILDAKQKGFVPLYVNATAGTTVYGAFDPIQEIADICEKYNLW 368

Query:   129 MHVDACWGGSLIFSEKYSFVLKGINRANSVSWNPHKMLGAPLQCSILLIKEKGLLHQANA 188
             +HVDA WGG L+ S K+   L GI RANSV+WNPHKM+G  LQCS +L+KEKG+L   N 
Sbjct:   369 LHVDAAWGGGLLMSRKHRHKLSGIERANSVTWNPHKMMGVLLQCSAILVKEKGILQGCNQ 428

Query:   189 TAATYLFQQDKFYDVSFDTGDKSVQCGRKVDAFKLWLMWKARGNLGFRHFVDNAVD 244
               A YLFQ DK YDVS+DTGDK++QCGR VD FK WLMWKA+G +GF + ++  ++
Sbjct:   429 MCAGYLFQPDKQYDVSYDTGDKAIQCGRHVDIFKFWLMWKAKGTVGFENQINKCLE 484

GO:0001701 "in utero embryonic development" evidence=ISO

GO:0001764 "neuron migration" evidence=ISO

GO:0004351 "glutamate decarboxylase activity" evidence=ISO;ISS;IDA

GO:0005622 "intracellular" evidence=IEA;ISO;ISS

GO:0005737 "cytoplasm" evidence=ISO

GO:0005739 "mitochondrion" evidence=ISO

GO:0005938 "cell cortex" evidence=ISO

GO:0006915 "apoptotic process" evidence=ISO

GO:0009449 "gamma-aminobutyric acid biosynthetic process" evidence=IDA

GO:0016595 "glutamate binding" evidence=IDA

GO:0019752 "carboxylic acid metabolic process" evidence=IEA

GO:0021696 "cerebellar cortex morphogenesis" evidence=ISO

GO:0021772 "olfactory bulb development" evidence=ISO

GO:0030170 "pyridoxal phosphate binding" evidence=IEA;IDA

GO:0030424 "axon" evidence=ISO

GO:0035108 "limb morphogenesis" evidence=ISO

GO:0035264 "multicellular organism growth" evidence=ISO

GO:0042136 "neurotransmitter biosynthetic process" evidence=IEA

GO:0042493 "response to drug" evidence=IEP

GO:0043679 "axon terminus" evidence=ISO

GO:0044306 "neuron projection terminus" evidence=ISO

GO:0045202 "synapse" evidence=ISO

GO:0046982 "protein heterodimerization activity" evidence=IDA

GO:0047485 "protein N-terminus binding" evidence=IPI

GO:0048786 "presynaptic active zone" evidence=ISO

GO:0048854 "brain morphogenesis" evidence=ISO

GO:0061351 "neural precursor cell proliferation" evidence=ISO

UNIPROTKB|Q0VCA1 GAD1 "Glutamate decarboxylase 1" [Bos taurus (taxid:9913)]

 Score = 760 (272.6 bits), Expect = 2.1e-75, P = 2.1e-75
 Identities = 138/236 (58%), Positives = 177/236 (75%)

Query:     9 PGGSISNMYSICLARYRLDPDTKRKGLSHLPPLCMFTSEDSHYSMLKAAHWLGIGMDNVI 68
             PGG+ISNMYSI  AR++  P+ K KG++ +P L +FTSE SHYS+ KA   LG G DNVI
Sbjct:   250 PGGAISNMYSIMAARFKYFPEVKTKGMAAVPKLVLFTSEHSHYSIKKAGAALGFGTDNVI 309

Query:    69 RVKTNERGQMICSFLEQTIQTSLAEKKIPLFVNATAGTTVLGAFDPLDEIATVCEKYDLW 128
              +K NERG++I + LE  I  +  +  +PL+VNATAGTTV GAFDP+ EIA +CEKY+LW
Sbjct:   310 LIKCNERGKIIPADLETKILEAKQKGYVPLYVNATAGTTVYGAFDPIQEIADICEKYNLW 369

Query:   129 MHVDACWGGSLIFSEKYSFVLKGINRANSVSWNPHKMLGAPLQCSILLIKEKGLLHQANA 188
             +HVDA WGG L+ S+K+   L GI RANSV+WNPHKM+G  LQCS +L+KEKG+L   N 
Sbjct:   370 LHVDAAWGGGLLMSQKHRHKLSGIERANSVTWNPHKMMGVLLQCSAILVKEKGILQGCNQ 429

Query:   189 TAATYLFQQDKFYDVSFDTGDKSVQCGRKVDAFKLWLMWKARGNLGFRHFVDNAVD 244
               A YLFQ DK YDVS+DTGDK++QCGR VD FK WLMWKA+G +GF + ++  ++
Sbjct:   430 MCAGYLFQPDKQYDVSYDTGDKAIQCGRHVDIFKFWLMWKAKGTVGFENQINKCLE 485

GO:0005622 "intracellular" evidence=IEA

GO:0004351 "glutamate decarboxylase activity" evidence=IEA

GO:0042136 "neurotransmitter biosynthetic process" evidence=IEA

GO:0030170 "pyridoxal phosphate binding" evidence=IEA

GO:0019752 "carboxylic acid metabolic process" evidence=IEA

UNIPROTKB|P48319 GAD1 "Glutamate decarboxylase 1" [Sus scrofa (taxid:9823)]

 Score = 758 (271.9 bits), Expect = 3.5e-75, P = 3.5e-75
 Identities = 139/236 (58%), Positives = 176/236 (74%)

Query:     9 PGGSISNMYSICLARYRLDPDTKRKGLSHLPPLCMFTSEDSHYSMLKAAHWLGIGMDNVI 68
             PGG+ISNMYSI  ARY+  P+ K KG++ +P L +FTSE SHYS+ KA   LG G DNVI
Sbjct:   250 PGGAISNMYSIMAARYKYFPEVKTKGMAAVPKLVLFTSEHSHYSIKKAGAALGFGTDNVI 309

Query:    69 RVKTNERGQMICSFLEQTIQTSLAEKKIPLFVNATAGTTVLGAFDPLDEIATVCEKYDLW 128
              +K NERG++I + LE  I  +  +  IPL+VNATAGTTV GAFDP+ EIA +CEKY+LW
Sbjct:   310 LIKCNERGKIIPADLEAKILEAKQKGYIPLYVNATAGTTVYGAFDPIQEIADICEKYNLW 369

Query:   129 MHVDACWGGSLIFSEKYSFVLKGINRANSVSWNPHKMLGAPLQCSILLIKEKGLLHQANA 188
             +HVDA WGG L+ S K+   L GI RA+SV+WNPHKM+G  LQCS +L+KEKG+L   N 
Sbjct:   370 LHVDAAWGGGLLMSRKHRHKLSGIERADSVTWNPHKMMGVLLQCSAILVKEKGILQGCNQ 429

Query:   189 TAATYLFQQDKFYDVSFDTGDKSVQCGRKVDAFKLWLMWKARGNLGFRHFVDNAVD 244
               A YLFQ DK YDVS+DTGDK++QCGR VD FK WLMWKA+G +GF + ++  ++
Sbjct:   430 MCAGYLFQPDKQYDVSYDTGDKAIQCGRHVDIFKFWLMWKAKGTVGFENQINKCLE 485

GO:0005622 "intracellular" evidence=IEA

GO:0004351 "glutamate decarboxylase activity" evidence=IEA

GO:0042136 "neurotransmitter biosynthetic process" evidence=IEA

GO:0030170 "pyridoxal phosphate binding" evidence=IEA

GO:0019752 "carboxylic acid metabolic process" evidence=IEA

ZFIN|ZDB-GENE-030909-3 gad1b "glutamate decarboxylase 1b" [Danio rerio (taxid:7955)]

 Score = 652 (234.6 bits), Expect = 4.1e-75, Sum P(2) = 4.1e-75
 Identities = 118/212 (55%), Positives = 153/212 (72%)

Query:    35 LSHLPPLCMFTSEDSHYSMLKAAHWLGIGMDNVIRVKTNERGQMICSFLEQTIQTSLAEK 94
             L HL     F    SHYS+ KA   LG G +NVI +KT+ERG++I + LE  +  +  + 
Sbjct:   295 LDHLIDGRPFLFSQSHYSIKKAGAVLGFGKENVILLKTDERGRVIPADLEAKVIDAKQKG 354

Query:    95 KIPLFVNATAGTTVLGAFDPLDEIATVCEKYDLWMHVDACWGGSLIFSEKYSFVLKGINR 154
              +PLFVNATAGTTV GAFDP+++IA +CEKY+LW+HVD  WGG L+ S K+   L GI R
Sbjct:   355 YVPLFVNATAGTTVYGAFDPINDIADICEKYNLWLHVDGAWGGGLLMSRKHRHKLSGIER 414

Query:   155 ANSVSWNPHKMLGAPLQCSILLIKEKGLLHQANATAATYLFQQDKFYDVSFDTGDKSVQC 214
             ANSV+WNPHKM+G PLQCS +L++EKG+L   N+  A YLFQ DK YDV++DTGDK++QC
Sbjct:   415 ANSVTWNPHKMMGVPLQCSAILVREKGILQGCNSMCAGYLFQPDKQYDVTYDTGDKAIQC 474

Query:   215 GRKVDAFKLWLMWKARGNLGFRHFVDNAVDCS 246
             GR VD FK WLMWKA+G +GF   +D  ++ S
Sbjct:   475 GRHVDIFKFWLMWKAKGTIGFEQHIDRCLELS 506

GO:0016831 "carboxy-lyase activity" evidence=IEA

GO:0030170 "pyridoxal phosphate binding" evidence=IEA

GO:0003824 "catalytic activity" evidence=IEA

GO:0019752 "carboxylic acid metabolic process" evidence=IEA

GO:0042136 "neurotransmitter biosynthetic process" evidence=IEP

GO:0009449 "gamma-aminobutyric acid biosynthetic process" evidence=IEP

GO:0004351 "glutamate decarboxylase activity" evidence=IEA

GO:0016829 "lyase activity" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
P48318	DCE1_MOUSE	4, ., 1, ., 1, ., 1, 5	0.5840	0.4642	0.3507	yes	N/A
P48319	DCE1_PIG	4, ., 1, ., 1, ., 1, 5	0.5815	0.4665	0.3518	yes	N/A
Q99259	DCE1_HUMAN	4, ., 1, ., 1, ., 1, 5	0.5732	0.4665	0.3518	yes	N/A
Q5IS68	DCE1_PANTR	4, ., 1, ., 1, ., 1, 5	0.5774	0.4665	0.3518	yes	N/A
Q28D99	GADL1_XENTR	4, ., 1, ., 1, ., -	0.5916	0.5334	0.4677	yes	N/A
P18088	DCE1_RAT	4, ., 1, ., 1, ., 1, 5	0.5815	0.4665	0.3524	yes	N/A
A0PA85	DCE1_CANFA	4, ., 1, ., 1, ., 1, 5	0.5815	0.4665	0.3518	yes	N/A
Q5R7S7	DCE1_PONAB	4, ., 1, ., 1, ., 1, 5	0.5690	0.4665	0.3518	yes	N/A
Q0VCA1	DCE1_BOVIN	4, ., 1, ., 1, ., 1, 5	0.5774	0.4665	0.3518	yes	N/A

EC Number Prediction by EFICAz Software

Prediction Level	EC number	Confidence of Prediction
3rd Layer	4.1.1	0.766

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database

ID	Length	Definition	E-value
Query	448
pfam00282	373	pfam00282, Pyridoxal_deC, Pyridoxal-dependent deca	5e-77
cd06450	345	cd06450, DOPA_deC_like, DOPA decarboxylase family	6e-65
COG0076	460	COG0076, GadB, Glutamate decarboxylase and related	1e-43
TIGR03799	522	TIGR03799, NOD_PanD_pyr, putative pyridoxal-depend	9e-34
PLN02590	539	PLN02590, PLN02590, probable tyrosine decarboxylas	1e-28
PLN02880	490	PLN02880, PLN02880, tyrosine decarboxylase	6e-23
pfam00282	373	pfam00282, Pyridoxal_deC, Pyridoxal-dependent deca	3e-18
TIGR03812	373	TIGR03812, tyr_de_CO2_Arch, tyrosine decarboxylase	1e-17
PRK02769	380	PRK02769, PRK02769, histidine decarboxylase; Provi	5e-17
PRK13520	371	PRK13520, PRK13520, L-tyrosine decarboxylase; Prov	1e-16
cd06450	345	cd06450, DOPA_deC_like, DOPA decarboxylase family	3e-15
TIGR03811	608	TIGR03811, tyr_de_CO2_Ent, tyrosine decarboxylase,	3e-14
PLN03032	374	PLN03032, PLN03032, serine decarboxylase; Provisio	2e-12
PLN02263	470	PLN02263, PLN02263, serine decarboxylase	8e-10
cd00615	294	cd00615, Orn_deC_like, Ornithine decarboxylase fam	5e-06
cd01494	170	cd01494, AAT_I, Aspartate aminotransferase (AAT) s	2e-05
PLN02590	539	PLN02590, PLN02590, probable tyrosine decarboxylas	1e-04
COG1104	386	COG1104, NifS, Cysteine sulfinate desulfinase/cyst	5e-04
COG0520	405	COG0520, csdA, Selenocysteine lyase/Cysteine desul	0.001
PLN02880	490	PLN02880, PLN02880, tyrosine decarboxylase	0.004

>gnl|CDD|215836 pfam00282, Pyridoxal_deC, Pyridoxal-dependent decarboxylase conserved domain

 Score =  244 bits (624), Expect = 5e-77
 Identities = 89/235 (37%), Positives = 125/235 (53%), Gaps = 3/235 (1%)

Query: 9   PGGSISNMYSICLARYRLDPDTKRKGLSHLPPLCMFTSEDSHYSMLKAAHWLGIGMDNVI 68
            G S SN+ ++  AR +     K  G   L  L  +TS+ +H S+ KAA   G+ +    
Sbjct: 110 GGSSESNLLALLAARTKWIRRMKAAGKPSLGKLVAYTSDQAHSSIEKAALIAGVEL---R 166

Query: 69  RVKTNERGQMICSFLEQTIQTSLAEKKIPLFVNATAGTTVLGAFDPLDEIATVCEKYDLW 128
            + T+E G+M    LE+ I+       IP FV AT GTT  GAFDPL E+  +C KYDLW
Sbjct: 167 EIPTDENGKMRGMDLEKAIEEDKENGLIPFFVCATLGTTGSGAFDPLQELGDICNKYDLW 226

Query: 129 MHVDACWGGSLIFSEKYSFVLKGINRANSVSWNPHKMLGAPLQCSILLIKEKGLLHQANA 188
           +HVDA + GS     ++   L GI RA+S S+NPHK +   L CS L +++KG L QA  
Sbjct: 227 LHVDAAYAGSAFICPEFRHWLFGIERADSFSFNPHKWMLVLLDCSALWVRDKGALQQALQ 286

Query: 189 TAATYLFQQDKFYDVSFDTGDKSVQCGRKVDAFKLWLMWKARGNLGFRHFVDNAV 243
               YL   DK  DV+ D GD  +   R+    KLW + ++ G  G ++ +   V
Sbjct: 287 FNPEYLGHNDKQSDVAVDYGDWQIPLSRRFRILKLWFVLRSYGVEGLQNQIRRHV 341

Length = 373

>gnl|CDD|99743 cd06450, DOPA_deC_like, DOPA decarboxylase family

 Score =  212 bits (541), Expect = 6e-65
 Identities = 79/239 (33%), Positives = 110/239 (46%), Gaps = 44/239 (18%)

Query: 9   PGGSISNMYSICLARYRLDPDTKRKGLSHLPPLCMFTSEDSHYSMLKAAHWLGIGMDNVI 68
            GGS SN+ ++  AR R     K  G   +  L +  S+ +H S+ KAA +L +    V 
Sbjct: 64  SGGSESNLLALLAARDRARKRLKAGGGRGIDKLVIVCSDQAHVSVEKAAAYLDV---KVR 120

Query: 69  RVKTNERGQMICSFLEQTIQTSLAEKKIPLFVNATAGTTVLGAFDPLDEIATVCEKYDLW 128
            V  +E G+M    LE  I    AE   P+ V ATAGTT  GA DPL+EIA + EKYDLW
Sbjct: 121 LVPVDEDGRMDPEALEAAIDEDKAEGLNPIMVVATAGTTDTGAIDPLEEIADLAEKYDLW 180

Query: 129 MHVDACWGGSLIFSEKYSFVLKGINRANSVSWNPHKMLGAPLQCSILLIKEKGLLHQANA 188
           +HVDA +GG L+   +   +  GI R +S+S +PHK    PL CS +L++          
Sbjct: 181 LHVDAAYGGFLLPFPEPRHLDFGIERVDSISVDPHKYGLVPLGCSAVLVR---------- 230

Query: 189 TAATYLFQQDKFYDVSFDTGDKSVQCGRKVDAFKLWLMWKARGNLGFRHFVDNAVDCSR 247
                                          A KLW   +  G  G+   +D  VD ++
Sbjct: 231 -------------------------------ALKLWATLRRFGRDGYGEHIDRIVDLAK 258

This family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). The major groups in this CD correspond to DOPA/tyrosine decarboxylase (DDC), histidine decarboxylase (HDC), and glutamate decarboxylase (GDC). DDC is active as a dimer and catalyzes the decarboxylation of tyrosine. GDC catalyzes the decarboxylation of glutamate and HDC catalyzes the decarboxylation of histidine. Length = 345

>gnl|CDD|223154 COG0076, GadB, Glutamate decarboxylase and related PLP-dependent proteins [Amino acid transport and metabolism]

 Score =  159 bits (403), Expect = 1e-43
 Identities = 67/239 (28%), Positives = 114/239 (47%), Gaps = 14/239 (5%)

Query: 10  GGSISNMYSICLARYRLDPDTKRKGLSHLPPLCMFTSEDSHYSMLKAAHWLGIGMDNVIR 69
           GG+ +N+ ++  AR R       +         +  SE +H+S  KAA +LG+G+  V  
Sbjct: 127 GGTEANLLALLAARERWRKRALAESGKPGGKPNIVCSETAHFSFEKAARYLGLGLRRVPT 186

Query: 70  VKTNERGQMICSFLEQTIQTSLAEKKIPLFVNATAGTTVLGAFDPLDEIATVCEKYDLWM 129
           V T    ++    LE+ I     E  I   V  TAGTT  G+ D ++E+A + E+Y +W+
Sbjct: 187 VPT--DYRIDVDALEEAI----DENTIGGVVVGTAGTTDTGSIDDIEELADIAEEYGIWL 240

Query: 130 HVDACWGGSLI-FSEKYSFVLKGINRANSVSWNPHKMLGAPLQCSILLIKEKGLLHQANA 188
           HVDA +GG L+ F E       G+   +S++ + HK   AP+ C ++L +++  L +   
Sbjct: 241 HVDAAFGGFLLPFLEPDGRWDFGLEGVDSITVDGHKYGLAPIGCGVVLFRDEEALRRILI 300

Query: 189 TAATYLFQQDKFYDVSFDTGDKSVQCGRKVDAFKLWLMWKARGNLGFRHFVDNAVDCSR 247
            A  YL        +  +      + GR   A  L+   +  G  G+R  +D  ++ +R
Sbjct: 301 FADYYL----PGGGIP-NFTILGSRPGR--QALALYANLRRLGREGYRKLLDRTLELAR 352

Length = 460

>gnl|CDD|163511 TIGR03799, NOD_PanD_pyr, putative pyridoxal-dependent aspartate 1-decarboxylase

 Score =  132 bits (334), Expect = 9e-34
 Identities = 74/195 (37%), Positives = 105/195 (53%), Gaps = 18/195 (9%)

Query: 10  GGSISNMYSICLARYR-LDPDTKRKG---------LSH--LPPLCMFTSEDSHYSMLKAA 57
           GG+++N+ ++ +AR R L  D   KG         L H     L +  SE  HYS+ KAA
Sbjct: 167 GGTVANITALWVARNRLLKADGDFKGVAREGLFAALKHYGYDGLAILVSERGHYSLGKAA 226

Query: 58  HWLGIGMDNVIRVKTNERGQMICSFLEQTIQTSLAEKKI-PLFVNATAGTTVLGAFDPLD 116
             LGIG DN+I +KT+   ++    L       LAE+ I PL +   AGTT  G  DPLD
Sbjct: 227 DVLGIGRDNLIAIKTDANNRIDVDALRDKCA-ELAEQNIKPLAIVGVAGTTETGNIDPLD 285

Query: 117 EIATVCEKYDLWMHVDACWGGSLIFSEKYSFVLKGINRANSVSWNPHKMLGAPLQCSILL 176
           E+A + ++     HVDA WGG+ + S  Y  +LKGI RA+SV+ + HK L  P+   ++L
Sbjct: 286 EMADIAQELGCHFHVDAAWGGATLLSNTYRHLLKGIERADSVTIDAHKQLYVPMGAGMVL 345

Query: 177 IKEKGLL----HQAN 187
            K+  L+    H A 
Sbjct: 346 FKDPALMSAIEHHAE 360

This enzyme is proposed here to be a form of aspartate 1-decarboxylase, pyridoxal-dependent, that represents a non-orthologous displacement to the more widely distributed pyruvoyl-dependent form (TIGR00223). Aspartate 1-decarboxylase makes beta-alanine, used usually in pathothenate biosynthesis, by decarboxylation from asparatate. A number of species with the PanB and PanC enzymes, however, lack PanD. This protein family occurs in a number of Proteobacteria that lack PanD. This enzyme family appears to be a pyridoxal-dependent enzyme (see pfam00282). The family was identified by Partial Phylogenetic Profiling; members in Geobacter sulfurreducens, G. metallireducens, and Pseudoalteromonas atlantica are clustered with the genes for PanB and PanC. We suggest the gene symbol panP (panthothenate biosynthesis enzyme, Pyridoxal-dependent) [Biosynthesis of cofactors, prosthetic groups, and carriers, Pantothenate and coenzyme A]. Length = 522

>gnl|CDD|178200 PLN02590, PLN02590, probable tyrosine decarboxylase

 Score =  117 bits (295), Expect = 1e-28
 Identities = 70/219 (31%), Positives = 112/219 (51%), Gaps = 2/219 (0%)

Query: 31  KRKGLSHLPPLCMFTSEDSHYSMLKAAHWLGIGMDNVIRVKTNERGQ--MICSFLEQTIQ 88
           K+ G + LP L ++ S+ +H S  KA    GI  +N+  +KT+      M    LE+ I 
Sbjct: 220 KKVGKTLLPQLVVYGSDQTHSSFRKACLIGGIHEENIRLLKTDSSTNYGMPPESLEEAIS 279

Query: 89  TSLAEKKIPLFVNATAGTTVLGAFDPLDEIATVCEKYDLWMHVDACWGGSLIFSEKYSFV 148
             LA+  IP F+ AT GTT   A DPL  +  + +KY +W+HVDA + G+     +Y   
Sbjct: 280 HDLAKGFIPFFICATVGTTSSAAVDPLVPLGNIAKKYGIWLHVDAAYAGNACICPEYRKF 339

Query: 149 LKGINRANSVSWNPHKMLGAPLQCSILLIKEKGLLHQANATAATYLFQQDKFYDVSFDTG 208
           + GI  A+S + N HK L A   CS L +K++  L  A  T   YL  +    D   +  
Sbjct: 340 IDGIENADSFNMNAHKWLFANQTCSPLWVKDRYSLIDALKTNPEYLEFKVSKKDTVVNYK 399

Query: 209 DKSVQCGRKVDAFKLWLMWKARGNLGFRHFVDNAVDCSR 247
           D  +   R+  + KLW++ +  G+   R+F+ + V+ ++
Sbjct: 400 DWQISLSRRFRSLKLWMVLRLYGSENLRNFIRDHVNLAK 438

Length = 539

>gnl|CDD|215475 PLN02880, PLN02880, tyrosine decarboxylase

 Score =  100 bits (251), Expect = 6e-23
 Identities = 60/219 (27%), Positives = 107/219 (48%), Gaps = 2/219 (0%)

Query: 31  KRKGLSHLPPLCMFTSEDSHYSMLKAAHWLGIGMDNVIRVKTNERGQMICS--FLEQTIQ 88
           ++ G + L  L ++ S+ +H ++ KA    GI  +N   +KT+       +   L + I 
Sbjct: 172 RKVGKNALEKLVVYASDQTHSALQKACQIAGIHPENCRLLKTDSSTNYALAPELLSEAIS 231

Query: 89  TSLAEKKIPLFVNATAGTTVLGAFDPLDEIATVCEKYDLWMHVDACWGGSLIFSEKYSFV 148
           T L+   IP F+ AT GTT   A DPL E+  + +   +W HVDA + GS     +Y   
Sbjct: 232 TDLSSGLIPFFLCATVGTTSSTAVDPLLELGKIAKSNGMWFHVDAAYAGSACICPEYRHY 291

Query: 149 LKGINRANSVSWNPHKMLGAPLQCSILLIKEKGLLHQANATAATYLFQQDKFYDVSFDTG 208
           + G+  A+S + N HK       CS+L +K++  L Q+ +T   +L  +    +   D  
Sbjct: 292 IDGVEEADSFNMNAHKWFLTNFDCSLLWVKDRNALIQSLSTNPEFLKNKASQANSVVDYK 351

Query: 209 DKSVQCGRKVDAFKLWLMWKARGNLGFRHFVDNAVDCSR 247
           D  +  GR+  + KLW++ +  G    + ++ N +  ++
Sbjct: 352 DWQIPLGRRFRSLKLWMVLRLYGVENLQSYIRNHIKLAK 390

Length = 490

>gnl|CDD|215836 pfam00282, Pyridoxal_deC, Pyridoxal-dependent decarboxylase conserved domain

 Score = 85.5 bits (212), Expect = 3e-18
 Identities = 25/96 (26%), Positives = 42/96 (43%), Gaps = 1/96 (1%)

Query: 262 GLLHQANATAATYLFQQDKFYDVSFDTGDKSVQCGRKVDAFKLWLMWKARGNLGFRHFVD 321
           G L QA      YL   DK  DV+ D GD  +   R+    KLW + ++ G  G ++ + 
Sbjct: 279 GALQQALQFNPEYLGHNDKQSDVAVDYGDWQIPLSRRFRILKLWFVLRSYGVEGLQNQIR 338

Query: 322 NAVDCSRYFLSQISQRPGFRLVIPEFQCTNICFWFI 357
             V+ ++YF + + +   F +         +CF   
Sbjct: 339 RHVELAKYFEALVRKDSRFEICAER-GLGLVCFRLK 373

Length = 373

>gnl|CDD|234361 TIGR03812, tyr_de_CO2_Arch, tyrosine decarboxylase MnfA

 Score = 83.6 bits (207), Expect = 1e-17
 Identities = 62/250 (24%), Positives = 109/250 (43%), Gaps = 47/250 (18%)

Query: 10  GGSISNMYSICLARYRLDPDTKRKGLSHLPPLCMFTSEDSHYSMLKAAHWLGIGMDNVIR 69
           GG+ +N+ ++  A+  L  + KR     +P       E +H+S  KAA  LG+    +  
Sbjct: 84  GGTEANIQAVRAAKN-LAREEKRTPNIIVP-------ESAHFSFEKAAEMLGL---ELRY 132

Query: 70  VKTNERGQMICSFLEQTIQTSLAEKKIPLFVNATAGTTVLGAFDPLDEIATVCEKYDLWM 129
              +E   +    +E  I     +  I +     AGTT LG  D ++E++ +  +  +++
Sbjct: 133 APLDEDYTVDVKDVEDLID----DNTIGIV--GIAGTTELGQIDDIEELSKIALENGIYL 186

Query: 130 HVDACWGGSLI-FSE------KYSFVLKGINRANSVSWNPHKMLGAPLQCSILLIKEKGL 182
           HVDA +GG +I F +       + F L G+    S++ +PHKM  +P+    +L + K  
Sbjct: 187 HVDAAFGGFVIPFLKKGYNPPPFDFSLPGV---QSITIDPHKMGLSPIPAGGILFRSKSY 243

Query: 183 LHQANATAATYLFQQDKFYDVSFDTGDKSVQC---GRK--VDAFKLWLMWKARGNLGFRH 237
           L +  +  A YL            T  K  Q    G +    A   + + K  G  G+R 
Sbjct: 244 L-KYLSVDAPYL------------TVKK--QATITGTRSGASAAATYAVIKYLGREGYRK 288

Query: 238 FVDNAVDCSR 247
            V   ++ +R
Sbjct: 289 IVAECMENTR 298

Members of this protein family are the archaeal form, MnfA, of tyrosine decarboxylase, and are involved in methanofuran biosynthesis. Members show clear homology to the Enterococcus form, Tdc, that is involved in tyrosine decarboxylation for resistance to acidic conditions [Biosynthesis of cofactors, prosthetic groups, and carriers, Other]. Length = 373

>gnl|CDD|235068 PRK02769, PRK02769, histidine decarboxylase; Provisional

 Score = 82.0 bits (203), Expect = 5e-17
 Identities = 67/250 (26%), Positives = 112/250 (44%), Gaps = 51/250 (20%)

Query: 10  GGSISNMYSICLARYRLDPDTKRKGLSHLPPLCMFTSEDSHYSMLKAAHWLGIGMDNVIR 69
           GG+  N+Y   LAR               P   ++ S+D+HYS+ K A  L I    VI 
Sbjct: 92  GGTEGNLYGCYLARELF------------PDGTLYYSKDTHYSVSKIARLLRI-KSRVIT 138

Query: 70  VKTNERGQMICSFLEQTIQTSLAEKKIPLFVNATAGTTVLGAFDPLDEIATVCEKY---D 126
              N  G++    L   I+ +   K  P  + A  GTT+ GA D + EI  + +K    D
Sbjct: 139 SLPN--GEIDYDDLISKIKEN---KNQPPIIFANIGTTMTGAIDNIKEIQEILKKIGIDD 193

Query: 127 LWMHVDACWGGSLI-FSE---KYSFVLKGINRANSVSWNPHKMLGAPLQCSILLIKEKGL 182
            ++H DA   G ++ F      +SF   GI+   S++ + HK +G+P+ C I+L K+K +
Sbjct: 194 YYIHADAALSGMILPFVNNPPPFSFA-DGID---SIAISGHKFIGSPMPCGIVLAKKKYV 249

Query: 183 LHQANATAATYLFQQDKFY-DVSF-DTGDKSVQCGRKVDAFKLWLMWKA---RGNLGFRH 237
                          ++   DV +  + D+++   R  +     L+W A    G+ G R 
Sbjct: 250 ---------------ERISVDVDYIGSRDQTISGSR--NGHTALLLWAAIRSLGSKGLRQ 292

Query: 238 FVDNAVDCSR 247
            V + +D ++
Sbjct: 293 RVQHCLDMAQ 302

Length = 380

>gnl|CDD|237409 PRK13520, PRK13520, L-tyrosine decarboxylase; Provisional

 Score = 80.7 bits (200), Expect = 1e-16
 Identities = 41/141 (29%), Positives = 73/141 (51%), Gaps = 16/141 (11%)

Query: 47  EDSHYSMLKAAHWLGIGMDNVIRVKTNERGQMICSFLEQTIQTSLAEKKIPLFVNATAGT 106
           E +H+S  KAA  LG+    + R   ++  ++    +E  I     +      V   AGT
Sbjct: 111 ESAHFSFDKAADMLGV---ELRRAPLDDDYRVDVKAVEDLI-----DDNTIGIV-GIAGT 161

Query: 107 TVLGAFDPLDEIATVCEKYDLWMHVDACWGGSLI-FSEK---YSFVLKGINRANSVSWNP 162
           T LG  DP+ E++ +  +  +++HVDA +GG +I F +    + F L G+   +S++ +P
Sbjct: 162 TELGQVDPIPELSKIALENGIFLHVDAAFGGFVIPFLDDPPNFDFSLPGV---DSITIDP 218

Query: 163 HKMLGAPLQCSILLIKEKGLL 183
           HKM  AP+    +L +++  L
Sbjct: 219 HKMGLAPIPAGGILFRDESYL 239

Length = 371

>gnl|CDD|99743 cd06450, DOPA_deC_like, DOPA decarboxylase family

 Score = 76.1 bits (188), Expect = 3e-15
 Identities = 31/132 (23%), Positives = 50/132 (37%), Gaps = 17/132 (12%)

Query: 299 VDAFKLWLMWKARGNLGFRHFVDNAVDCSRYFLSQISQRPGFRLVIPEFQCTNICFWFIP 358
           V A KLW   +  G  G+   +D  VD ++Y    I   PGF L+      + +CF   P
Sbjct: 229 VRALKLWATLRRFGRDGYGEHIDRIVDLAKYLAELIRADPGFELLGEP-NLSLVCFRLKP 287

Query: 359 VSLRDKVEDETWWSTLSKVAPRIKEKLVLGGTLMIGYQPLQHRNLHNFFRLVTTCHPASS 418
               D            ++   + ++L   G   +    L      N  R     +P ++
Sbjct: 288 SVKLD------------ELNYDLSDRLNERGGWHVPATTLGGP---NVLR-FVVTNPLTT 331

Query: 419 RQDMDYAIDQIE 430
           R D D  ++ IE
Sbjct: 332 RDDADALLEDIE 343

This family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). The major groups in this CD correspond to DOPA/tyrosine decarboxylase (DDC), histidine decarboxylase (HDC), and glutamate decarboxylase (GDC). DDC is active as a dimer and catalyzes the decarboxylation of tyrosine. GDC catalyzes the decarboxylation of glutamate and HDC catalyzes the decarboxylation of histidine. Length = 345

>gnl|CDD|163523 TIGR03811, tyr_de_CO2_Ent, tyrosine decarboxylase, Enterococcus type

 Score = 74.5 bits (183), Expect = 3e-14
 Identities = 56/186 (30%), Positives = 89/186 (47%), Gaps = 40/186 (21%)

Query: 50  HYSMLKAAHWLGIGMDNVIRVKTNERGQMICSFLEQTIQTSLAEKKIP-LFVNATAGTTV 108
           HYS LKAA  +GIG+D VI V  +   +M  + LE+ I+  LA +K P L V    G+T 
Sbjct: 232 HYSWLKAADIIGIGLDQVIPVPVDSNYRMDINELEKIIR-KLAAEKTPILGVVGVVGSTE 290

Query: 109 LGAFDPLDEIATVCEKYD-----LWMHVDACWGG---SL--------------------- 139
            GA D +D+I  +  K        ++HVDA +GG   ++                     
Sbjct: 291 EGAVDGIDKIVALRNKLMKEGIYFYLHVDAAYGGYGRAIFLDEDDNFIPYDDLQEVHAEY 350

Query: 140 -IFSEKYSFV-------LKGINRANSVSWNPHKMLGAPLQCSILLIKEKGLLHQANATAA 191
            +F+EK  ++        K I+ A SV+ +PHKM   P     ++I++   +    +  A
Sbjct: 351 GVFTEKKEYISREVYNAYKAISEAESVTIDPHKMGYIPYSAGGIVIQDI-RMRDVISYFA 409

Query: 192 TYLFQQ 197
           TY+F++
Sbjct: 410 TYVFEK 415

This model represents tyrosine decarboxylases in the family of the Enterococcus faecalis enzyme Tdc. These enzymes often are encoded next to tyrosine/tyramine antiporter, together comprising a system in which tyrosine decarboxylation can protect against exposure to acid conditions. This clade differs from the archaeal tyrosine decarboxylases associated with methanofuran biosynthesis [Cellular processes, Adaptations to atypical conditions]. Length = 608

>gnl|CDD|166673 PLN03032, PLN03032, serine decarboxylase; Provisional

 Score = 67.9 bits (166), Expect = 2e-12
 Identities = 51/178 (28%), Positives = 81/178 (45%), Gaps = 29/178 (16%)

Query: 11  GSISNMYSICLARYRLDPDTKRKGLSHLPPLCMFTSEDSHYSMLKAAHWLGIGMDNVIRV 70
           G+  N++ I + R               P   ++ S +SHYS+ KAA      M+ V +V
Sbjct: 94  GTEGNLHGILVGR------------EVFPDGILYASRESHYSVFKAARMYR--MEAV-KV 138

Query: 71  KTNERGQMICSFLEQTIQTSLAEKKIPLFVNATAGTTVLGAFDPLDEIATVCEKYD---- 126
            T   G++    LE+ +  +   +  P  +N   GTTV GA D LD I  + ++      
Sbjct: 139 PTLPSGEIDYDDLERALAKN---RDKPAILNVNIGTTVKGAVDDLDRILRILKELGYTED 195

Query: 127 -LWMHVD-ACWGGSLIFSEKYSFVL--KGINRANSVSWNPHKMLGAPLQCSILLIKEK 180
             ++H D A +G  + F  +   V   K I    SVS + HK LG P+ C + L ++K
Sbjct: 196 RFYIHCDGALFGLMMPFVSRAPEVTFRKPI---GSVSVSGHKFLGCPMPCGVALTRKK 250

Length = 374

>gnl|CDD|177904 PLN02263, PLN02263, serine decarboxylase

 Score = 60.2 bits (146), Expect = 8e-10
 Identities = 44/145 (30%), Positives = 69/145 (47%), Gaps = 17/145 (11%)

Query: 38  LPPLCMFTSEDSHYSMLKAAHWLGIGMDNVIRVKTNERGQMICSFLEQTIQTSLAEKKIP 97
            P   ++ S +SHYS+ KAA    +     ++V T   G++ C+  +  +   LA K  P
Sbjct: 176 FPDGILYASRESHYSVFKAARMYRME---CVKVDTLVSGEIDCADFKAKL---LANKDKP 229

Query: 98  LFVNATAGTTVLGAFDPLDEIATVCEK----YD-LWMHVDACWGGSLI-FSEKYSFVL-- 149
             +N   GTTV GA D LD +    E+     D  ++H D    G ++ F ++   V   
Sbjct: 230 AIINVNIGTTVKGAVDDLDLVIKTLEECGFSQDRFYIHCDGALFGLMMPFVKRAPKVTFK 289

Query: 150 KGINRANSVSWNPHKMLGAPLQCSI 174
           K I    SVS + HK +G P+ C +
Sbjct: 290 KPI---GSVSVSGHKFVGCPMPCGV 311

Length = 470

>gnl|CDD|99739 cd00615, Orn_deC_like, Ornithine decarboxylase family

 Score = 47.6 bits (114), Expect = 5e-06
 Identities = 16/83 (19%), Positives = 24/83 (28%), Gaps = 7/83 (8%)

Query: 115 LDEIATVCEKYDLWMHVDACWGGSLIFSEKY---SFVLKGINRANSVSWNPHKMLGAPLQ 171
           L +I        L + VD   G    F       + +        S     HK L A  Q
Sbjct: 172 LRKIVEEAHHRGLPVLVDEAHGAHFRFHPILPSSAAMAGADIVVQST----HKTLPALTQ 227

Query: 172 CSILLIKEKGLLHQANATAATYL 194
            S++ +K   +       A    
Sbjct: 228 GSMIHVKGDLVNPDRVNEALNLH 250

This family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). The major groups in this CD corresponds to ornithine decarboxylase (ODC), arginine decarboxylase (ADC) and lysine decarboxylase (LDC). ODC is a dodecamer composed of six homodimers and catalyzes the decarboxylation of tryptophan. ADC catalyzes the decarboxylation of arginine and LDC catalyzes the decarboxylation of lysine. Members of this family are widely found in all three forms of life. Length = 294

>gnl|CDD|99742 cd01494, AAT_I, Aspartate aminotransferase (AAT) superfamily (fold type I) of pyridoxal phosphate (PLP)-dependent enzymes

 Score = 44.7 bits (106), Expect = 2e-05
 Identities = 24/88 (27%), Positives = 39/88 (44%), Gaps = 4/88 (4%)

Query: 91  LAEKKIPLFVNATAGTTVLGAFDPLDEIATVCEKYDLWMHVDACWGGSLIFSEKYSFVLK 150
           L  K     +  T  TT  G   PL EI  + ++Y + + VDA   G    +     VL 
Sbjct: 87  LKAKPNVALIVITPNTTSGGVLVPLKEIRKIAKEYGILLLVDAASAGGASPA---PGVLI 143

Query: 151 GINRANSVSWNPHKMLGAPLQCSILLIK 178
               A+ V+++ HK LG      ++++K
Sbjct: 144 PEGGADVVTFSLHKNLGGE-GGGVVIVK 170

PLP combines with an alpha-amino acid to form a compound called a Schiff base or aldimine intermediate, which depending on the reaction, is the substrate in four kinds of reactions (1) transamination (movement of amino groups), (2) racemization (redistribution of enantiomers), (3) decarboxylation (removing COOH groups), and (4) various side-chain reactions depending on the enzyme involved. Pyridoxal phosphate (PLP) dependent enzymes were previously classified into alpha, beta and gamma classes, based on the chemical characteristics (carbon atom involved) of the reaction they catalyzed. The availability of several structures allowed a comprehensive analysis of the evolutionary classification of PLP dependent enzymes, and it was found that the functional classification did not always agree with the evolutionary history of these enzymes. Structure and sequence analysis has revealed that the PLP dependent enzymes can be classified into four major groups of different evolutionary origin: aspartate aminotransferase superfamily (fold type I), tryptophan synthase beta superfamily (fold type II), alanine racemase superfamily (fold type III), and D-amino acid superfamily (fold type IV) and Glycogen phophorylase family (fold type V). Length = 170

>gnl|CDD|178200 PLN02590, PLN02590, probable tyrosine decarboxylase

 Score = 43.9 bits (103), Expect = 1e-04
 Identities = 41/167 (24%), Positives = 69/167 (41%), Gaps = 18/167 (10%)

Query: 209 DKSVQCGRKVDAFKLWLMWKAR--GNL----GFRHFVD----------NAVDCSRGSMTF 252
           D  V  G     + +WL   A   GN      +R F+D          NA      + T 
Sbjct: 304 DPLVPLGNIAKKYGIWLHVDAAYAGNACICPEYRKFIDGIENADSFNMNAHKWLFANQTC 363

Query: 253 STLLCFDLQGLLHQANATAATYLFQQDKFYDVSFDTGDKSVQCGRKVDAFKLWLMWKARG 312
           S L   D   L+  A  T   YL  +    D   +  D  +   R+  + KLW++ +  G
Sbjct: 364 SPLWVKDRYSLI-DALKTNPEYLEFKVSKKDTVVNYKDWQISLSRRFRSLKLWMVLRLYG 422

Query: 313 NLGFRHFVDNAVDCSRYFLSQISQRPGFRLVIPEFQCTNICFWFIPV 359
           +   R+F+ + V+ +++F   ++Q P F +V   +  + +CF   PV
Sbjct: 423 SENLRNFIRDHVNLAKHFEDYVAQDPSFEVVTTRY-FSLVCFRLAPV 468

Length = 539

>gnl|CDD|224029 COG1104, NifS, Cysteine sulfinate desulfinase/cysteine desulfurase and related enzymes [Amino acid transport and metabolism]

 Score = 41.8 bits (99), Expect = 5e-04
 Identities = 22/105 (20%), Positives = 39/105 (37%), Gaps = 15/105 (14%)

Query: 31  KRKGLSHLPPLCMFTSEDSHYSMLKAAHWLGIGMDNVIRVKTNERGQMICSFLEQTIQ-- 88
             +   H+      TS   H ++L    +L      V  +  +  G +    LE+ ++  
Sbjct: 87  NAQKGKHI-----ITSAIEHPAVLNTCRYLERQGFEVTYLPVDSNGLVDLEQLEEALRPD 141

Query: 89  TSLAEKKIPLFVNATAGTTVLGAFDPLDEIATVCEKYDLWMHVDA 133
           T L        V+        G   P+ EI  +C++  +  HVDA
Sbjct: 142 TIL--------VSIMHANNETGTIQPIAEIGEICKERGILFHVDA 178

Length = 386

>gnl|CDD|223594 COG0520, csdA, Selenocysteine lyase/Cysteine desulfurase [Posttranslational modification, protein turnover, chaperones]

 Score = 40.4 bits (95), Expect = 0.001
 Identities = 30/146 (20%), Positives = 57/146 (39%), Gaps = 27/146 (18%)

Query: 45  TSEDSHYSMLKAAHWLG--IGMDNVIRVKTNERGQMICSFLEQTI--QTSLAEKKIPLFV 100
            S+  H+S +     L    G   V  +  ++ G +    LE+ I  +T L        V
Sbjct: 116 VSDLEHHSNIVPWQELAKRTGAK-VRVIPLDDDGLLDLDALEKLITPKTKL--------V 166

Query: 101 NATAGTTVLGAFDPLDEIATVCEKYDLWMHVDACWGGSLI---FSE-KYSFVLKGINRAN 156
             +  + V G  +P+ EIA +  ++   + VDA      +     E    F         
Sbjct: 167 ALSHVSNVTGTVNPVKEIAELAHEHGALVLVDAAQAAGHLPIDVQELGCDF--------- 217

Query: 157 SVSWNPHKMLGAPLQCSILLIKEKGL 182
            ++++ HK L  P    +L ++++ L
Sbjct: 218 -LAFSGHKWLLGPTGIGVLYVRKELL 242

Length = 405

>gnl|CDD|215475 PLN02880, PLN02880, tyrosine decarboxylase

 Score = 39.1 bits (91), Expect = 0.004
 Identities = 26/117 (22%), Positives = 50/117 (42%), Gaps = 9/117 (7%)

Query: 244 DCSRGSMTFSTLLCFDLQGLLHQANATAATYLFQQDKFYDVSFDTGDKSVQCGRKVDAFK 303
           DCS        LL    +  L Q+ +T   +L  +    +   D  D  +  GR+  + K
Sbjct: 314 DCS--------LLWVKDRNALIQSLSTNPEFLKNKASQANSVVDYKDWQIPLGRRFRSLK 365

Query: 304 LWLMWKARGNLGFRHFVDNAVDCSRYFLSQISQRPGFRLVIPEFQCTNICFWFIPVS 360
           LW++ +  G    + ++ N +  ++ F   ++Q   F +V P    + +CF  +P  
Sbjct: 366 LWMVLRLYGVENLQSYIRNHIKLAKEFEQLVAQDSRFEVVTPR-IFSLVCFRLVPPK 421

Length = 490

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	448
KOG0629|consensus	510		100.0
PLN02590	539	probable tyrosine decarboxylase	100.0
PLN02880	490	tyrosine decarboxylase	100.0
TIGR03799	522	NOD_PanD_pyr putative pyridoxal-dependent aspartat	100.0
PF00282	373	Pyridoxal_deC: Pyridoxal-dependent decarboxylase c	100.0
KOG0628|consensus	511		100.0
PLN02263	470	serine decarboxylase	100.0
TIGR01788	431	Glu-decarb-GAD glutamate decarboxylase. This model	100.0
TIGR03811	608	tyr_de_CO2_Ent tyrosine decarboxylase, Enterococcu	100.0
PLN03032	374	serine decarboxylase; Provisional	100.0
COG0076	460	GadB Glutamate decarboxylase and related PLP-depen	100.0
PRK02769	380	histidine decarboxylase; Provisional	100.0
COG0520	405	csdA Selenocysteine lyase/Cysteine desulfurase [Po	100.0
cd06450	345	DOPA_deC_like DOPA decarboxylase family. This fami	100.0
COG1104	386	NifS Cysteine sulfinate desulfinase/cysteine desul	100.0
PRK09295	406	bifunctional cysteine desulfurase/selenocysteine l	99.97
PRK13520	371	L-tyrosine decarboxylase; Provisional	99.97
TIGR03392	398	FeS_syn_CsdA cysteine desulfurase, catalytic subun	99.97
PRK10874	401	cysteine sulfinate desulfinase; Provisional	99.97
TIGR03812	373	tyr_de_CO2_Arch tyrosine decarboxylase MnfA. Membe	99.97
TIGR01977	376	am_tr_V_EF2568 cysteine desulfurase family protein	99.97
TIGR03402	379	FeS_nifS cysteine desulfurase NifS. Members of thi	99.97
TIGR01979	403	sufS cysteine desulfurases, SufS subfamily. This m	99.97
PLN02855	424	Bifunctional selenocysteine lyase/cysteine desulfu	99.96
PF00266	371	Aminotran_5: Aminotransferase class-V; InterPro: I	99.96
PLN02651	364	cysteine desulfurase	99.96
TIGR01814	406	kynureninase kynureninase. This model describes ky	99.96
TIGR03403	382	nifS_epsilon cysteine desulfurase, NifS family, ep	99.96
cd06453	373	SufS_like Cysteine desulfurase (SufS)-like. This f	99.96
TIGR02006	402	IscS cysteine desulfurase IscS. This model represe	99.95
cd06451	356	AGAT_like Alanine-glyoxylate aminotransferase (AGA	99.95
PLN02409	401	serine--glyoxylate aminotransaminase	99.95
TIGR02326	363	transamin_PhnW 2-aminoethylphosphonate--pyruvate t	99.95
COG0075	383	Serine-pyruvate aminotransferase/archaeal aspartat	99.94
PRK02948	381	cysteine desulfurase; Provisional	99.94
TIGR01976	397	am_tr_V_VC1184 cysteine desulfurase family protein	99.94
PRK09331	387	Sep-tRNA:Cys-tRNA synthetase; Provisional	99.94
PRK14012	404	cysteine desulfurase; Provisional	99.93
PLN02414	993	glycine dehydrogenase (decarboxylating)	99.93
PRK04366	481	glycine dehydrogenase subunit 2; Validated	99.93
PRK05367	954	glycine dehydrogenase; Provisional	99.93
TIGR00461	939	gcvP glycine dehydrogenase (decarboxylating). This	99.93
PLN02724	805	Molybdenum cofactor sulfurase	99.93
PRK13479	368	2-aminoethylphosphonate--pyruvate transaminase; Pr	99.93
TIGR03301	355	PhnW-AepZ 2-aminoethylphosphonate aminotransferase	99.92
PTZ00094	452	serine hydroxymethyltransferase; Provisional	99.92
KOG1549|consensus	428		99.92
cd00613	398	GDC-P Glycine cleavage system P-protein, alpha- an	99.92
cd06452	361	SepCysS Sep-tRNA:Cys-tRNA synthase. This family be	99.92
PRK03080	378	phosphoserine aminotransferase; Provisional	99.92
PRK00451	447	glycine dehydrogenase subunit 1; Validated	99.91
TIGR03235	353	DNA_S_dndA cysteine desulfurase DndA. This model d	99.91
TIGR02539	370	SepCysS Sep-tRNA:Cys-tRNA synthase. Aminoacylation	99.91
KOG1383|consensus	491		99.9
TIGR01822	393	2am3keto_CoA 2-amino-3-ketobutyrate coenzyme A lig	99.9
TIGR03531	444	selenium_SpcS O-phosphoseryl-tRNA(Sec) selenium tr	99.9
COG0156	388	BioF 7-keto-8-aminopelargonate synthetase and rela	99.89
PRK12566	954	glycine dehydrogenase; Provisional	99.89
PRK07179	407	hypothetical protein; Provisional	99.89
COG2008	342	GLY1 Threonine aldolase [Amino acid transport and	99.89
TIGR01364	349	serC_1 phosphoserine aminotransferase. This model	99.89
PLN02721	353	threonine aldolase	99.89
cd00611	355	PSAT_like Phosphoserine aminotransferase (PSAT) fa	99.89
PRK05355	360	3-phosphoserine/phosphohydroxythreonine aminotrans	99.88
PRK05937	370	8-amino-7-oxononanoate synthase; Provisional	99.88
cd00616	352	AHBA_syn 3-amino-5-hydroxybenzoic acid synthase fa	99.87
PLN03226	475	serine hydroxymethyltransferase; Provisional	99.87
TIGR01366	361	serC_3 phosphoserine aminotransferase, putative. T	99.87
cd06454	349	KBL_like KBL_like; this family belongs to the pyri	99.87
TIGR01821	402	5aminolev_synth 5-aminolevulinic acid synthase. Th	99.86
PRK13580	493	serine hydroxymethyltransferase; Provisional	99.86
KOG1368|consensus	384		99.86
cd06502	338	TA_like Low-specificity threonine aldolase (TA). T	99.86
PRK13392	410	5-aminolevulinate synthase; Provisional	99.85
TIGR01437	363	selA_rel uncharacterized pyridoxal phosphate-depen	99.85
PRK13034	416	serine hydroxymethyltransferase; Reviewed	99.85
PRK09064	407	5-aminolevulinate synthase; Validated	99.85
cd00609	350	AAT_like Aspartate aminotransferase family. This f	99.84
KOG2862|consensus	385		99.84
PRK13393	406	5-aminolevulinate synthase; Provisional	99.84
PRK06939	397	2-amino-3-ketobutyrate coenzyme A ligase; Provisio	99.84
PRK05958	385	8-amino-7-oxononanoate synthase; Reviewed	99.83
COG1103	382	Archaea-specific pyridoxal phosphate-dependent enz	99.83
cd00378	402	SHMT Serine-glycine hydroxymethyltransferase (SHMT	99.83
PLN02483	489	serine palmitoyltransferase	99.83
COG0436	393	Aspartate/tyrosine/aromatic aminotransferase [Amin	99.83
PLN02822	481	serine palmitoyltransferase	99.82
PLN02955	476	8-amino-7-oxononanoate synthase	99.82
PRK00011	416	glyA serine hydroxymethyltransferase; Reviewed	99.82
PRK08361	391	aspartate aminotransferase; Provisional	99.82
TIGR00858	360	bioF 8-amino-7-oxononanoate synthase. This model r	99.81
TIGR01825	385	gly_Cac_T_rel pyridoxal phosphate-dependent acyltr	99.81
PRK15029	755	arginine decarboxylase; Provisional	99.81
cd00615	294	Orn_deC_like Ornithine decarboxylase family. This	99.8
PF01276	417	OKR_DC_1: Orn/Lys/Arg decarboxylase, major domain;	99.8
TIGR01141	346	hisC histidinol-phosphate aminotransferase. Histid	99.8
PRK05367	954	glycine dehydrogenase; Provisional	99.8
PRK06108	382	aspartate aminotransferase; Provisional	99.79
PLN03227	392	serine palmitoyltransferase-like protein; Provisio	99.78
PLN02271	586	serine hydroxymethyltransferase	99.78
PRK05764	393	aspartate aminotransferase; Provisional	99.78
PRK06225	380	aspartate aminotransferase; Provisional	99.78
PLN02414	993	glycine dehydrogenase (decarboxylating)	99.78
PRK05957	389	aspartate aminotransferase; Provisional	99.77
TIGR03588	380	PseC UDP-4-keto-6-deoxy-N-acetylglucosamine 4-amin	99.76
TIGR01365	374	serC_2 phosphoserine aminotransferase, Methanosarc	99.76
PRK15399	713	lysine decarboxylase LdcC; Provisional	99.75
PRK06290	410	aspartate aminotransferase; Provisional	99.75
PRK07309	391	aromatic amino acid aminotransferase; Validated	99.75
PRK07682	378	hypothetical protein; Validated	99.75
PRK07324	373	transaminase; Validated	99.75
PRK15400	714	lysine decarboxylase CadA; Provisional	99.75
PRK13578	720	ornithine decarboxylase; Provisional	99.75
KOG1360|consensus	570		99.74
PRK08363	398	alanine aminotransferase; Validated	99.74
KOG1359|consensus	417		99.74
PRK06207	405	aspartate aminotransferase; Provisional	99.74
PLN00145	430	tyrosine/nicotianamine aminotransferase; Provision	99.74
PRK00950	361	histidinol-phosphate aminotransferase; Validated	99.73
COG1003	496	GcvP Glycine cleavage system protein P (pyridoxal-	99.73
PRK13238	460	tnaA tryptophanase/L-cysteine desulfhydrase, PLP-d	99.73
PRK07681	399	aspartate aminotransferase; Provisional	99.73
TIGR03537	350	DapC succinyldiaminopimelate transaminase. Note: t	99.73
PRK14807	351	histidinol-phosphate aminotransferase; Provisional	99.73
PTZ00377	481	alanine aminotransferase; Provisional	99.73
cd00614	369	CGS_like CGS_like: Cystathionine gamma-synthase is	99.73
PRK05968	389	hypothetical protein; Provisional	99.72
PRK11658	379	UDP-4-amino-4-deoxy-L-arabinose--oxoglutarate amin	99.72
PRK09265	404	aminotransferase AlaT; Validated	99.72
PRK09082	386	methionine aminotransferase; Validated	99.72
PRK07550	386	hypothetical protein; Provisional	99.72
PRK08134	433	O-acetylhomoserine aminocarboxypropyltransferase;	99.72
PRK08114	395	cystathionine beta-lyase; Provisional	99.71
PRK03244	398	argD acetylornithine aminotransferase; Provisional	99.71
PRK06767	386	methionine gamma-lyase; Provisional	99.71
PF00155	363	Aminotran_1_2: Aminotransferase class I and II 1-a	99.71
TIGR03540	383	DapC_direct LL-diaminopimelate aminotransferase. T	99.71
PRK08912	387	hypothetical protein; Provisional	99.71
PLN02452	365	phosphoserine transaminase	99.71
PLN00175	413	aminotransferase family protein; Provisional	99.71
PRK05942	394	aspartate aminotransferase; Provisional	99.71
PRK08861	388	cystathionine gamma-synthase; Provisional	99.71
PRK01688	351	histidinol-phosphate aminotransferase; Provisional	99.71
PRK02731	367	histidinol-phosphate aminotransferase; Validated	99.71
TIGR01329	378	cysta_beta_ly_E cystathionine beta-lyase, eukaryot	99.7
PLN02376	496	1-aminocyclopropane-1-carboxylate synthase	99.7
PLN02187	462	rooty/superroot1	99.7
TIGR01265	403	tyr_nico_aTase tyrosine/nicotianamine aminotransfe	99.7
PRK13355	517	bifunctional HTH-domain containing protein/aminotr	99.7
PRK08056	356	threonine-phosphate decarboxylase; Provisional	99.7
PRK05387	353	histidinol-phosphate aminotransferase; Provisional	99.7
COG3844	407	Kynureninase [Amino acid transport and metabolism]	99.7
PRK04870	356	histidinol-phosphate aminotransferase; Provisional	99.7
PRK08064	390	cystathionine beta-lyase; Provisional	99.69
TIGR01328	391	met_gam_lyase methionine gamma-lyase. This model d	99.69
PRK07777	387	aminotransferase; Validated	99.69
PRK08960	387	hypothetical protein; Provisional	99.69
TIGR01324	377	cysta_beta_ly_B cystathionine beta-lyase, bacteria	99.69
PRK04635	354	histidinol-phosphate aminotransferase; Provisional	99.69
PRK06348	384	aspartate aminotransferase; Provisional	99.69
PRK00854	401	rocD ornithine--oxo-acid transaminase; Reviewed	99.69
cd00610	413	OAT_like Acetyl ornithine aminotransferase family.	99.69
PRK09028	394	cystathionine beta-lyase; Provisional	99.68
PRK07568	397	aspartate aminotransferase; Provisional	99.68
PLN03026	380	histidinol-phosphate aminotransferase; Provisional	99.68
PRK07811	388	cystathionine gamma-synthase; Provisional	99.68
PRK03158	359	histidinol-phosphate aminotransferase; Provisional	99.68
PRK08133	390	O-succinylhomoserine sulfhydrylase; Validated	99.68
PRK10534	333	L-threonine aldolase; Provisional	99.68
PRK09276	385	LL-diaminopimelate aminotransferase; Provisional	99.68
PLN02656	409	tyrosine transaminase	99.68
PRK15481	431	transcriptional regulatory protein PtsJ; Provision	99.67
PRK05613	437	O-acetylhomoserine aminocarboxypropyltransferase;	99.67
PRK07582	366	cystathionine gamma-lyase; Validated	99.67
PTZ00433	412	tyrosine aminotransferase; Provisional	99.67
PRK09105	370	putative aminotransferase; Provisional	99.67
cd01494	170	AAT_I Aspartate aminotransferase (AAT) superfamily	99.67
TIGR01264	401	tyr_amTase_E tyrosine aminotransferase, eukaryotic	99.67
PRK08776	405	cystathionine gamma-synthase; Provisional	99.67
PRK07683	387	aminotransferase A; Validated	99.66
PRK08248	431	O-acetylhomoserine aminocarboxypropyltransferase;	99.66
TIGR00461	939	gcvP glycine dehydrogenase (decarboxylating). This	99.66
PRK12414	384	putative aminotransferase; Provisional	99.66
PRK08045	386	cystathionine gamma-synthase; Provisional	99.66
PRK07812	436	O-acetylhomoserine aminocarboxypropyltransferase;	99.66
PRK06836	394	aspartate aminotransferase; Provisional	99.66
PTZ00125	400	ornithine aminotransferase-like protein; Provision	99.66
PLN02509	464	cystathionine beta-lyase	99.66
PLN02450	468	1-aminocyclopropane-1-carboxylate synthase	99.65
PRK04073	396	rocD ornithine--oxo-acid transaminase; Provisional	99.65
COG1168	388	MalY Bifunctional PLP-dependent enzyme with beta-c	99.65
PRK08068	389	transaminase; Reviewed	99.65
COG0399	374	WecE Predicted pyridoxal phosphate-dependent enzym	99.65
PRK07050	394	cystathionine beta-lyase; Provisional	99.65
PRK07504	398	O-succinylhomoserine sulfhydrylase; Reviewed	99.65
PLN02607	447	1-aminocyclopropane-1-carboxylate synthase	99.65
PRK05166	371	histidinol-phosphate aminotransferase; Provisional	99.65
PRK08574	385	cystathionine gamma-synthase; Provisional	99.65
TIGR01140	330	L_thr_O3P_dcar L-threonine-O-3-phosphate decarboxy	99.65
PRK05994	427	O-acetylhomoserine aminocarboxypropyltransferase;	99.65
PLN00143	409	tyrosine/nicotianamine aminotransferase; Provision	99.64
PLN02242	418	methionine gamma-lyase	99.64
TIGR03576	346	pyridox_MJ0158 pyridoxal phosphate enzyme, MJ0158	99.64
PRK07337	388	aminotransferase; Validated	99.64
PRK08636	403	aspartate aminotransferase; Provisional	99.64
PRK08153	369	histidinol-phosphate aminotransferase; Provisional	99.64
PRK08249	398	cystathionine gamma-synthase; Provisional	99.64
PRK06107	402	aspartate aminotransferase; Provisional	99.63
PF01212	290	Beta_elim_lyase: Beta-eliminating lyase; InterPro:	99.63
PRK07908	349	hypothetical protein; Provisional	99.63
PF02347	429	GDC-P: Glycine cleavage system P-protein; InterPro	99.63
PRK07505	402	hypothetical protein; Provisional	99.63
TIGR01325	380	O_suc_HS_sulf O-succinylhomoserine sulfhydrylase.	99.63
PRK07810	403	O-succinylhomoserine sulfhydrylase; Provisional	99.63
PRK06234	400	methionine gamma-lyase; Provisional	99.63
PRK08247	366	cystathionine gamma-synthase; Reviewed	99.63
PRK07269	364	cystathionine gamma-synthase; Reviewed	99.63
PRK03317	368	histidinol-phosphate aminotransferase; Provisional	99.63
PRK11706	375	TDP-4-oxo-6-deoxy-D-glucose transaminase; Provisio	99.63
PRK01533	366	histidinol-phosphate aminotransferase; Validated	99.62
PRK06358	354	threonine-phosphate decarboxylase; Provisional	99.62
TIGR02080	382	O_succ_thio_ly O-succinylhomoserine (thiol)-lyase.	99.62
PLN02231	534	alanine transaminase	99.62
PRK06425	332	histidinol-phosphate aminotransferase; Validated	99.62
TIGR02379	376	ECA_wecE TDP-4-keto-6-deoxy-D-glucose transaminase	99.62
PRK15407	438	lipopolysaccharide biosynthesis protein RfbH; Prov	99.62
TIGR01885	401	Orn_aminotrans ornithine aminotransferase. This mo	99.61
PRK04781	364	histidinol-phosphate aminotransferase; Provisional	99.61
PRK09148	405	aminotransferase; Validated	99.61
PRK07503	403	methionine gamma-lyase; Provisional	99.61
PRK08175	395	aminotransferase; Validated	99.61
PRK06084	425	O-acetylhomoserine aminocarboxypropyltransferase;	99.61
COG0403	450	GcvP Glycine cleavage system protein P (pyridoxal-	99.61
PF01041	363	DegT_DnrJ_EryC1: DegT/DnrJ/EryC1/StrS aminotransfe	99.6
cd00617	431	Tnase_like Tryptophanase family (Tnase). This fami	99.6
PF00464	399	SHMT: Serine hydroxymethyltransferase; InterPro: I	99.59
PRK07671	377	cystathionine beta-lyase; Provisional	99.59
PRK06460	376	hypothetical protein; Provisional	99.59
PRK06176	380	cystathionine gamma-synthase/cystathionine beta-ly	99.59
PRK05939	397	hypothetical protein; Provisional	99.58
COG0112	413	GlyA Glycine/serine hydroxymethyltransferase [Amin	99.58
PRK07366	388	succinyldiaminopimelate transaminase; Validated	99.58
PRK06855	433	aminotransferase; Validated	99.58
PRK03321	352	putative aminotransferase; Provisional	99.57
COG1982	557	LdcC Arginine/lysine/ornithine decarboxylases [Ami	99.57
TIGR03539	357	DapC_actino succinyldiaminopimelate transaminase.	99.56
PRK04311	464	selenocysteine synthase; Provisional	99.56
PRK06702	432	O-acetylhomoserine aminocarboxypropyltransferase;	99.56
PRK12462	364	phosphoserine aminotransferase; Provisional	99.56
TIGR02618	450	tyr_phenol_ly tyrosine phenol-lyase. This model de	99.56
TIGR03246	397	arg_catab_astC succinylornithine transaminase fami	99.55
TIGR01326	418	OAH_OAS_sulfhy OAH/OAS sulfhydrylase. This model d	99.55
COG0079	356	HisC Histidinol-phosphate/aromatic aminotransferas	99.55
PLN02624	474	ornithine-delta-aminotransferase	99.55
PRK05967	395	cystathionine beta-lyase; Provisional	99.55
PRK02610	374	histidinol-phosphate aminotransferase; Provisional	99.54
PRK07865	364	N-succinyldiaminopimelate aminotransferase; Review	99.54
PRK09147	396	succinyldiaminopimelate transaminase; Provisional	99.54
TIGR00707	379	argD acetylornithine and succinylornithine aminotr	99.54
PRK01278	389	argD acetylornithine transaminase protein; Provisi	99.53
PF05889	389	SLA_LP_auto_ag: Soluble liver antigen/liver pancre	99.53
PRK09275	527	aspartate aminotransferase; Provisional	99.53
PRK05964	423	adenosylmethionine--8-amino-7-oxononanoate transam	99.52
TIGR03538	393	DapC_gpp succinyldiaminopimelate transaminase. Thi	99.52
KOG0259|consensus	447		99.52
PRK02936	377	argD acetylornithine aminotransferase; Provisional	99.52
PRK03715	395	argD acetylornithine transaminase protein; Provisi	99.52
TIGR00474	454	selA seryl-tRNA(sec) selenium transferase. In bact	99.52
COG1167	459	ARO8 Transcriptional regulators containing a DNA-b	99.51
PRK02627	396	acetylornithine aminotransferase; Provisional	99.51
KOG0256|consensus	471		99.5
PRK07392	360	threonine-phosphate decarboxylase; Validated	99.5
COG2873	426	MET17 O-acetylhomoserine sulfhydrylase [Amino acid	99.5
TIGR03801	521	asp_4_decarbox aspartate 4-decarboxylase. This enz	99.49
PRK11522	459	putrescine--2-oxoglutarate aminotransferase; Provi	99.49
PRK06434	384	cystathionine gamma-lyase; Validated	99.49
PRK05093	403	argD bifunctional N-succinyldiaminopimelate-aminot	99.49
PRK04260	375	acetylornithine aminotransferase; Provisional	99.48
PLN02672	1082	methionine S-methyltransferase	99.48
PRK13237	460	tyrosine phenol-lyase; Provisional	99.48
KOG1357|consensus	519		99.47
PRK07590	409	L,L-diaminopimelate aminotransferase; Validated	99.47
PRK03967	337	histidinol-phosphate aminotransferase; Provisional	99.46
KOG0630|consensus	838		99.45
PRK14809	357	histidinol-phosphate aminotransferase; Provisional	99.44
PRK12381	406	bifunctional succinylornithine transaminase/acetyl	99.44
TIGR03542	402	DAPAT_plant LL-diaminopimelate aminotransferase. T	99.43
PRK08637	388	hypothetical protein; Provisional	99.42
PRK08117	433	4-aminobutyrate aminotransferase; Provisional	99.42
TIGR03372	442	putres_am_tran putrescine aminotransferase. Member	99.42
PLN02368	407	alanine transaminase	99.41
PRK09440	416	avtA valine--pyruvate transaminase; Provisional	99.41
PRK09257	396	aromatic amino acid aminotransferase; Provisional	99.4
PRK14808	335	histidinol-phosphate aminotransferase; Provisional	99.4
COG0160	447	GabT 4-aminobutyrate aminotransferase and related	99.4
PRK08354	311	putative aminotransferase; Provisional	99.4
PF01053	386	Cys_Met_Meta_PP: Cys/Met metabolism PLP-dependent	99.4
PRK09264	425	diaminobutyrate--2-oxoglutarate aminotransferase;	99.4
PRK05664	330	threonine-phosphate decarboxylase; Reviewed	99.39
KOG2040|consensus	1001		99.39
COG0001	432	HemL Glutamate-1-semialdehyde aminotransferase [Co	99.39
PTZ00376	404	aspartate aminotransferase; Provisional	99.39
PRK07049	427	methionine gamma-lyase; Validated	99.39
PRK05839	374	hypothetical protein; Provisional	99.39
PRK12566	954	glycine dehydrogenase; Provisional	99.38
COG4992	404	ArgD Ornithine/acetylornithine aminotransferase [A	99.36
PRK05769	441	4-aminobutyrate aminotransferase; Provisional	99.36
TIGR02407	412	ectoine_ectB diaminobutyrate--2-oxoglutarate amino	99.36
PLN02760	504	4-aminobutyrate:pyruvate transaminase	99.36
PRK06541	460	hypothetical protein; Provisional	99.34
PRK04612	408	argD acetylornithine transaminase protein; Provisi	99.34
PRK08360	443	4-aminobutyrate aminotransferase; Provisional	99.34
PRK00062	426	glutamate-1-semialdehyde aminotransferase; Provisi	99.32
TIGR00713	423	hemL glutamate-1-semialdehyde-2,1-aminomutase. Thi	99.32
PRK06959	339	putative threonine-phosphate decarboxylase; Provis	99.32
PRK06058	443	4-aminobutyrate aminotransferase; Provisional	99.32
PLN02397	423	aspartate transaminase	99.31
PRK12403	460	putative aminotransferase; Provisional	99.31
COG0626	396	MetC Cystathionine beta-lyases/cystathionine gamma	99.29
KOG0257|consensus	420		99.29
PRK13360	442	omega amino acid--pyruvate transaminase; Provision	99.28
TIGR00700	420	GABAtrnsam 4-aminobutyrate aminotransferase, proka	99.28
PRK06062	451	hypothetical protein; Provisional	99.28
PRK08593	445	4-aminobutyrate aminotransferase; Provisional	99.27
PRK05639	457	4-aminobutyrate aminotransferase; Provisional	99.26
PRK06105	460	aminotransferase; Provisional	99.25
PRK12389	428	glutamate-1-semialdehyde aminotransferase; Provisi	99.25
PRK06777	421	4-aminobutyrate aminotransferase; Provisional	99.24
TIGR02617	467	tnaA_trp_ase tryptophanase, leader peptide-associa	99.24
PRK07678	451	aminotransferase; Validated	99.24
KOG0634|consensus	472		99.24
PRK00615	433	glutamate-1-semialdehyde aminotransferase; Provisi	99.23
PLN00144	382	acetylornithine transaminase	99.23
TIGR00709	442	dat 2,4-diaminobutyrate 4-transaminases. This fami	99.23
PLN02482	474	glutamate-1-semialdehyde 2,1-aminomutase	99.22
PRK09221	445	beta alanine--pyruvate transaminase; Provisional	99.22
PRK06149	972	hypothetical protein; Provisional	99.22
TIGR00508	427	bioA adenosylmethionine-8-amino-7-oxononanoate tra	99.22
PRK06173	429	adenosylmethionine--8-amino-7-oxononanoate transam	99.21
PRK07495	425	4-aminobutyrate aminotransferase; Provisional	99.2
PRK09792	421	4-aminobutyrate transaminase; Provisional	99.17
PRK07480	456	putative aminotransferase; Validated	99.16
PRK06938	464	diaminobutyrate--2-oxoglutarate aminotransferase;	99.16
PRK07036	466	hypothetical protein; Provisional	99.15
TIGR03251	431	LAT_fam L-lysine 6-transaminase. Characterized mem	99.15
KOG1358|consensus	467		99.14
PRK06917	447	hypothetical protein; Provisional	99.14
PRK06082	459	4-aminobutyrate aminotransferase; Provisional	99.14
PRK06148	1013	hypothetical protein; Provisional	99.14
PRK06943	453	adenosylmethionine--8-amino-7-oxononanoate transam	99.13
KOG3846|consensus	465		99.13
PRK04013	364	argD acetylornithine/acetyl-lysine aminotransferas	99.12
PRK07986	428	adenosylmethionine--8-amino-7-oxononanoate transam	99.11
PRK08297	443	L-lysine aminotransferase; Provisional	99.11
PRK05965	459	hypothetical protein; Provisional	99.11
PRK07030	466	adenosylmethionine--8-amino-7-oxononanoate transam	99.1
PRK08088	425	4-aminobutyrate aminotransferase; Validated	99.1
PRK07482	461	hypothetical protein; Provisional	99.1
KOG2467|consensus	477		99.09
PRK07481	449	hypothetical protein; Provisional	99.08
PRK06916	460	adenosylmethionine--8-amino-7-oxononanoate transam	99.08
PRK06931	459	diaminobutyrate--2-oxoglutarate aminotransferase;	99.08
PRK08742	472	adenosylmethionine--8-amino-7-oxononanoate transam	99.07
PRK06918	451	4-aminobutyrate aminotransferase; Reviewed	99.07
PRK07483	443	hypothetical protein; Provisional	99.06
PRK06209	431	glutamate-1-semialdehyde 2,1-aminomutase; Provisio	99.06
TIGR00699	464	GABAtrns_euk 4-aminobutyrate aminotransferase, euk	99.05
PRK05630	422	adenosylmethionine--8-amino-7-oxononanoate transam	98.99
PRK07046	453	aminotransferase; Validated	98.98
KOG1404|consensus	442		98.9
COG0161	449	BioA Adenosylmethionine-8-amino-7-oxononanoate ami	98.84
KOG0053|consensus	409		98.78
COG1932	365	SerC Phosphoserine aminotransferase [Coenzyme meta	98.74
COG3977	417	Alanine-alpha-ketoisovalerate (or valine-pyruvate)	98.66
KOG1402|consensus	427		98.58
KOG0633|consensus	375		98.56
KOG1401|consensus	433		98.49
KOG0258|consensus	475		98.48
PLN02974	817	adenosylmethionine-8-amino-7-oxononanoate transami	98.45
COG1448	396	TyrB Aspartate/tyrosine/aromatic aminotransferase	98.43
KOG3843|consensus	432		98.43
COG1921	395	SelA Selenocysteine synthase [seryl-tRNASer seleni	98.39
COG3033	471	TnaA Tryptophanase [Amino acid transport and metab	98.38
PF00202	339	Aminotran_3: Aminotransferase class-III; InterPro:	98.26
PF12897	425	Aminotran_MocR: Alanine-glyoxylate amino-transfera	98.22
KOG2040|consensus	1001		98.12
PF06838	403	Met_gamma_lyase: Methionine gamma-lyase ; InterPro	98.02
PF03841	367	SelA: L-seryl-tRNA selenium transferase; InterPro:	97.87
KOG2790|consensus	370		97.78
KOG1403|consensus	452		97.61
KOG1412|consensus	410		97.56
KOG1405|consensus	484		97.5
KOG0629|consensus	510		96.77
COG4100	416	Cystathionine beta-lyase family protein involved i	96.5
KOG1411|consensus	427		93.57
PF04864	363	Alliinase_C: Allinase; InterPro: IPR006948 Allicin	88.64
PF00282	373	Pyridoxal_deC: Pyridoxal-dependent decarboxylase c	81.8

>KOG0629|consensus

Probab=100.00  E-value=6.2e-55  Score=422.67  Aligned_cols=349  Identities=55%  Similarity=0.969  Sum_probs=325.0

Q ss_pred             ccEEEeCcHHHHHHHHHHHHHHhcCCcccccCCCCCCCeEEEecCCCchHHHHHHHHhCCCCCcEEEEecCCCCCcCHHH
Q psy14299          3 LKPFLLPGGSISNMYSICLARYRLDPDTKRKGLSHLPPLCMFTSEDSHYSMLKAAHWLGIGMDNVIRVKTNERGQMICSF   82 (448)
Q Consensus         3 ~~g~~t~ggT~an~~al~~a~~~~~~~~~~~G~~~~~~~~Vl~~~~~H~s~~~~~~~~g~~~~~v~~v~~~~~g~id~e~   82 (448)
                      .+|+|+|||+.||++++.+||.+..|+.|..|....|..++++|+.+|||+.++++.+|+|..+++.|++++.|.|++++
T Consensus       160 ~DgIf~pggsisn~Ya~~~Aryk~~Pe~K~~Gm~~~p~lilFtSeesHYSi~kaAa~lg~gtd~c~~v~t~e~Gkm~~~d  239 (510)
T KOG0629|consen  160 GDGIFAPGGSISNMYAMNCARYKNFPEVKTKGMFALPPLILFTSEESHYSIKKAAAFLGLGTDHCIKVKTDERGKMIPDD  239 (510)
T ss_pred             CCceecCCchhHHHHHHHHHHhhcCchhhhhhhhcCCcEEEEecccchhhHHHHHHHhccCCceeEEecccccCccchHH
Confidence            58999999999999999999999999999999998899999999999999999999999999899999999999999999


Q ss_pred             HHHHHHHhhhcCCCcEEEEEeccCCccccccCHHHHHHHHHHcCCEEEEecccccccccccchhhhhcCCCCccEEEECC
Q psy14299         83 LEQTIQTSLAEKKIPLFVNATAGTTVLGAFDPLDEIATVCEKYDLWMHVDACWGGSLIFSEKYSFVLKGINRANSVSWNP  162 (448)
Q Consensus        83 Le~~l~~~~~~~~~~~lVv~~~~~t~tG~~~~l~~I~~ia~~~g~~l~VD~A~~~~~~~~~~~~~~~~~~~~aD~~~~s~  162 (448)
                      ||+.|.+.++.|..|.+|.++.++|+.|++|||..|+++|++|+.|+|||+|+|+|.+.....+..+.|++.+||++.++
T Consensus       240 Le~kile~k~kg~~Pf~vnaTaGTTV~GAFDdL~~iadiC~k~~lWmHvDAAwGGglLmS~k~R~kl~Giera~Svtwnp  319 (510)
T KOG0629|consen  240 LEKKILEAKAKGGVPFFVNATAGTTVLGAFDDLNGIADICEKHKLWMHVDAAWGGGLLMSRKHRHKLTGIERANSVTWNP  319 (510)
T ss_pred             HHHHHHHHHhcCCCCeEEEecCCceeeeccCcHHHHHHHHHhcCEEEEeecccccccccChhhHhhccCccccCceeecH
Confidence            99999998888888999999999999999999999999999999999999999999999988899999999999999999


Q ss_pred             ccccCCCCceEEEEEeccchhhhhccCCcccccccCcccccccCCCCCcccCCCCchhHHHHHHHHHhChHHHHHHHHHh
Q psy14299        163 HKMLGAPLQCSILLIKEKGLLHQANATAATYLFQQDKFYDVSFDTGDKSVQCGRKVDAFKLWLMWKARGNLGFRHFVDNA  242 (448)
Q Consensus       163 hK~l~~P~g~G~l~vr~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~g~~~~i~~~  242 (448)
                      ||++++|-.|+.++.|.+                                                              
T Consensus       320 HK~~gaplqCsa~l~r~~--------------------------------------------------------------  337 (510)
T KOG0629|consen  320 HKLMGAPLQCSAFLTREE--------------------------------------------------------------  337 (510)
T ss_pred             HHhhcCcchhhHHHHHHH--------------------------------------------------------------
Confidence            999999999988665443                                                              


Q ss_pred             hhhccCCCccchhhhhhhhhhhhhhhhhhhhhhhccccccccccCCCCCccccccchhhHHHHHHHHHhcCccHHHHHHH
Q psy14299        243 VDCSRGSMTFSTLLCFDLQGLLHQANATAATYLFQQDKFYDVSFDTGDKSVQCGRKVDAFKLWLMWKARGNLGFRHFVDN  322 (448)
Q Consensus       243 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~  322 (448)
                                         +++.+-|++.|.|+||++|+||+++|+++|..||+|.+|.+++|.+|+.+|-+|+++.+++
T Consensus       338 -------------------gll~~Cn~~~A~YLFq~dK~YdvS~DTgdK~iQCGRh~D~FKlWlmwkaKG~~Gfe~~v~k  398 (510)
T KOG0629|consen  338 -------------------GLLQRCNQMSAIYLFQQDKFYDVSYDTGDKAIQCGRHVDVFKLWLMWKAKGTQGFEAQVDK  398 (510)
T ss_pred             -------------------HHHHhhcccchhhhhccCceeecccccccchhhcCccccHHHHHHHHHhcccccHHHHHHH
Confidence                               2344567888999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHhhcCCCeEEec-cCCceeeEEEEeeccCCCccccchhhhhhhhhhhHHHHHHHHhCCcEEEEeeecCCc
Q psy14299        323 AVDCSRYFLSQISQRPGFRLVI-PEFQCTNICFWFIPVSLRDKVEDETWWSTLSKVAPRIKEKLVLGGTLMIGYQPLQHR  401 (448)
Q Consensus       323 ~~~l~~~~~~~L~~~pg~~l~~-~~~~~~~v~f~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~L~~~g~~~~~~~~~~g~  401 (448)
                      +.++++|+.++|++.++++.+. .+|+..+++|+++|+.+.......++..++.++...|.+.+.++|..++++.+...+
T Consensus       399 ~~~lA~yl~~~lrer~~~~~l~~~~pe~~nv~fw~vp~~lR~~~~~~e~~~rL~kVaPkIK~~Mm~~Gt~Mi~YqPl~~~  478 (510)
T KOG0629|consen  399 CLRLAEYLYDRLREREGFEMLFELEPEHVNVCFWYVPPSLRGWQENPERDSRLVKVAPKIKERMMKKGTTMIGYQPLGDK  478 (510)
T ss_pred             HHHHHHHHHHHHHhcccceehhcCCCceEEEeeccCchHhccCcccchhhhHHHhhCcHHHHHHHhccceeeEecccccc
Confidence            9999999999999999988763 347889999999999998887778899999999999999999999999998877665


Q ss_pred             ccccEEEEEecCCCCCCHHHHHHHHHHHHHHHHH
Q psy14299        402 NLHNFFRLVTTCHPASSRQDMDYAIDQIELRGAE  435 (448)
Q Consensus       402 ~~~~~lRis~~~~~~~t~edid~l~~al~~~~~~  435 (448)
                        ++.+|..+. ++..+.+|+|.+++.|+.+.++
T Consensus       479 --~nffr~v~s-n~a~~~ad~dflldEIerlgq~  509 (510)
T KOG0629|consen  479 --PNFFRMVIS-NPALTEADLDFLLDEIERLGQD  509 (510)
T ss_pred             --cchhheecc-cchhhhhhHHHHHHHHHHhccC
Confidence              579999998 7888999999999999988764

>PLN02590 probable tyrosine decarboxylase

Probab=100.00  E-value=1.5e-53  Score=444.87  Aligned_cols=340  Identities=26%  Similarity=0.402  Sum_probs=300.6

Q ss_pred             ccEEEeCcHHHHHHHHHHHHHHhcCCcccccCCCCCCCeEEEecCCCchHHHHHHHHhCCCCCcEEEEecCC--CCCcCH
Q psy14299          3 LKPFLLPGGSISNMYSICLARYRLDPDTKRKGLSHLPPLCMFTSEDSHYSMLKAAHWLGIGMDNVIRVKTNE--RGQMIC   80 (448)
Q Consensus         3 ~~g~~t~ggT~an~~al~~a~~~~~~~~~~~G~~~~~~~~Vl~~~~~H~s~~~~~~~~g~~~~~v~~v~~~~--~g~id~   80 (448)
                      ++|+||+||||||++|+.+||.+..+   +.|..+.++.+||+|+.+|+|+.|+++++|++..+++.||++.  +++||+
T Consensus       195 ~gG~~~sGgSeAnl~al~aAR~~~~~---~~g~~~~~~~vvy~S~~aH~Sv~KAa~ilGlg~~~vr~Vp~d~~~~~~md~  271 (539)
T PLN02590        195 GGGVIQGTGCEAVLVVVLAARDRILK---KVGKTLLPQLVVYGSDQTHSSFRKACLIGGIHEENIRLLKTDSSTNYGMPP  271 (539)
T ss_pred             CceEEcCchHHHHHHHHHHHHHHHHh---hhcccCCCCEEEEecCCchHHHHHHHHHcCCCcccEEEEeCCCCCCCcCCH
Confidence            67999999999999999999987542   2344334778999999999999999999999887899999984  579999


Q ss_pred             HHHHHHHHHhhhcCCCcEEEEEeccCCccccccCHHHHHHHHHHcCCEEEEecccccccccccchhhhhcCCCCccEEEE
Q psy14299         81 SFLEQTIQTSLAEKKIPLFVNATAGTTVLGAFDPLDEIATVCEKYDLWMHVDACWGGSLIFSEKYSFVLKGINRANSVSW  160 (448)
Q Consensus        81 e~Le~~l~~~~~~~~~~~lVv~~~~~t~tG~~~~l~~I~~ia~~~g~~l~VD~A~~~~~~~~~~~~~~~~~~~~aD~~~~  160 (448)
                      ++|+++|+++.+++..|.+|+.+.++|.+|.+|||++|+++|++||+|+|||||+|+.++++++.+..+.+++.|||+++
T Consensus       272 ~~L~~~I~~d~~~g~~P~~VvaTaGTT~tGaiDpl~~Ia~i~~~~g~WlHVDaA~GG~al~~~~~r~~~~Gie~ADSit~  351 (539)
T PLN02590        272 ESLEEAISHDLAKGFIPFFICATVGTTSSAAVDPLVPLGNIAKKYGIWLHVDAAYAGNACICPEYRKFIDGIENADSFNM  351 (539)
T ss_pred             HHHHHHHHHHHhcCCCcEEEEEEeCCCCCcccCCHHHHHHHHHHhCCeEEEecchhhhhhcChhhHHHhcCCccCCEEEE
Confidence            99999999988888999999999999999999999999999999999999999999999999988888999999999999


Q ss_pred             CCccccCCCCceEEEEEeccchhhhhccCCcccccccCcccccccCCCCCcccCCCCchhHHHHHHHHHhChHHHHHHHH
Q psy14299        161 NPHKMLGAPLQCSILLIKEKGLLHQANATAATYLFQQDKFYDVSFDTGDKSVQCGRKVDAFKLWLMWKARGNLGFRHFVD  240 (448)
Q Consensus       161 s~hK~l~~P~g~G~l~vr~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~g~~~~i~  240 (448)
                      ++||||++|++||++++|++..+...+...+.|+.......+..+++.+++++++||++++++|++++.+|.+|++++|+
T Consensus       352 D~HK~l~~p~~cg~llvr~~~~l~~a~~~~~~YL~~~~~~~~~~~d~~d~~i~lsRr~raLklW~~lr~~G~~G~~~~i~  431 (539)
T PLN02590        352 NAHKWLFANQTCSPLWVKDRYSLIDALKTNPEYLEFKVSKKDTVVNYKDWQISLSRRFRSLKLWMVLRLYGSENLRNFIR  431 (539)
T ss_pred             CchhhcCcCcCEEEEEecCHHHHHHHhhcCHHHhCCcccccccCCCccccCCCCCCchHHHHHHHHHHHHHHHHHHHHHH
Confidence            99999999999999999998777777777888985432223345788999999999999999999999999999998666


Q ss_pred             HhhhhccCCCccchhhhhhhhhhhhhhhhhhhhhhhccccccccccCCCCCccccccchhhHHHHHHHHHhcCccHHHHH
Q psy14299        241 NAVDCSRGSMTFSTLLCFDLQGLLHQANATAATYLFQQDKFYDVSFDTGDKSVQCGRKVDAFKLWLMWKARGNLGFRHFV  320 (448)
Q Consensus       241 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~  320 (448)
                      +.+                                                                             
T Consensus       432 ~~~-----------------------------------------------------------------------------  434 (539)
T PLN02590        432 DHV-----------------------------------------------------------------------------  434 (539)
T ss_pred             HHH-----------------------------------------------------------------------------
Confidence            554                                                                             


Q ss_pred             HHHHHHHHHHHHHhhcCCCeEEeccCCceeeEEEEeeccCCCccccchhhhhhhhhhhHHHHHHHHhCCcEEEEeeecCC
Q psy14299        321 DNAVDCSRYFLSQISQRPGFRLVIPEFQCTNICFWFIPVSLRDKVEDETWWSTLSKVAPRIKEKLVLGGTLMIGYQPLQH  400 (448)
Q Consensus       321 ~~~~~l~~~~~~~L~~~pg~~l~~~~~~~~~v~f~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~L~~~g~~~~~~~~~~g  400 (448)
                          +++++|.+.|++.|+|+++ .++.+++|||++.|++..     +   +..+.++.++.++|.+.|.++++++.++|
T Consensus       435 ----~lA~~~~~~l~~~~~fel~-~~~~l~iVcFr~~~~~~~-----~---~~~~~ln~~l~~~l~~~G~~~vs~t~~~g  501 (539)
T PLN02590        435 ----NLAKHFEDYVAQDPSFEVV-TTRYFSLVCFRLAPVDGD-----E---DQCNERNRELLAAVNSTGKIFISHTALSG  501 (539)
T ss_pred             ----HHHHHHHHHHhcCCCeEEe-cCCceEEEEEEecCCCCC-----H---HHHHHHHHHHHHHHHhCCCEEEEeeEECC
Confidence                4599999999999999999 889999999999875432     1   23566788999999999999999999999


Q ss_pred             cccccEEEEEecCCCCCCHHHHHHHHHHHHHHHHHhHHh
Q psy14299        401 RNLHNFFRLVTTCHPASSRQDMDYAIDQIELRGAEVDLE  439 (448)
Q Consensus       401 ~~~~~~lRis~~~~~~~t~edid~l~~al~~~~~~~~~~  439 (448)
                      +   .+||++++ |+.|+++||+.+++.|.+.++++.++
T Consensus       502 ~---~~lR~~i~-n~~T~~~dv~~~~~~i~~~a~~~~~~  536 (539)
T PLN02590        502 K---FVLRFAVG-APLTEEKHVTEAWQIIQKHASKFTRN  536 (539)
T ss_pred             E---EEEEEEec-CCCCCHHHHHHHHHHHHHHHHHhccc
Confidence            8   89999999 89999999999999999998877643

>PLN02880 tyrosine decarboxylase

Probab=100.00  E-value=2.9e-51  Score=427.11  Aligned_cols=339  Identities=23%  Similarity=0.390  Sum_probs=294.9

Q ss_pred             ccEEEeCcHHHHHHHHHHHHHHhcCCcccccCCCCCCCeEEEecCCCchHHHHHHHHhCCCCCcEEEEecCC--CCCcCH
Q psy14299          3 LKPFLLPGGSISNMYSICLARYRLDPDTKRKGLSHLPPLCMFTSEDSHYSMLKAAHWLGIGMDNVIRVKTNE--RGQMIC   80 (448)
Q Consensus         3 ~~g~~t~ggT~an~~al~~a~~~~~~~~~~~G~~~~~~~~Vl~~~~~H~s~~~~~~~~g~~~~~v~~v~~~~--~g~id~   80 (448)
                      ++|++|+|||+||++|+.+||++..+   +.|..+.++.+||+|+.+|+|+.|+|+++|++..+++.||++.  +++||+
T Consensus       147 ~gG~~tsggs~anl~al~~AR~~~~~---~~g~~~~~~~vv~~S~~aH~Sv~Kaa~~lGlg~~~v~~Vp~d~~~~~~md~  223 (490)
T PLN02880        147 GGGVIQGTASEAVLVVLLAARDRVLR---KVGKNALEKLVVYASDQTHSALQKACQIAGIHPENCRLLKTDSSTNYALAP  223 (490)
T ss_pred             CceEEcCccHHHHHHHHHHHHHHHHH---HhcccccCCeEEEEcCCchHHHHHHHHHcCCCHHHEEEeecCCCcCCcCCH
Confidence            57999999999999999999987432   2233333567899999999999999999999877799999975  579999


Q ss_pred             HHHHHHHHHhhhcCCCcEEEEEeccCCccccccCHHHHHHHHHHcCCEEEEecccccccccccchhhhhcCCCCccEEEE
Q psy14299         81 SFLEQTIQTSLAEKKIPLFVNATAGTTVLGAFDPLDEIATVCEKYDLWMHVDACWGGSLIFSEKYSFVLKGINRANSVSW  160 (448)
Q Consensus        81 e~Le~~l~~~~~~~~~~~lVv~~~~~t~tG~~~~l~~I~~ia~~~g~~l~VD~A~~~~~~~~~~~~~~~~~~~~aD~~~~  160 (448)
                      ++|+++|+++.+++..|.+|+.+.++|.+|.+||+++|+++|++||+|+|||||||++.+..+.++..+.+++.+||+++
T Consensus       224 ~~L~~~i~~~~~~g~~p~~vvataGTT~~GaiDpl~eI~~i~~~~~iwlHVDaA~gg~~~~~~~~~~~l~gie~aDSit~  303 (490)
T PLN02880        224 ELLSEAISTDLSSGLIPFFLCATVGTTSSTAVDPLLELGKIAKSNGMWFHVDAAYAGSACICPEYRHYIDGVEEADSFNM  303 (490)
T ss_pred             HHHHHHHHHHHHCCCccEEEEEecCCCcCcccCcHHHHHHHHHHcCCEEEEehhhHHHHHhCHHHHHHhcCchhcCEEEE
Confidence            99999999988888899999999999999999999999999999999999999999999988888888899989999999


Q ss_pred             CCccccCCCCceEEEEEeccchhhhhccCCcccccccCcccccccCCCCCcccCCCCchhHHHHHHHHHhChHHHHHHHH
Q psy14299        161 NPHKMLGAPLQCSILLIKEKGLLHQANATAATYLFQQDKFYDVSFDTGDKSVQCGRKVDAFKLWLMWKARGNLGFRHFVD  240 (448)
Q Consensus       161 s~hK~l~~P~g~G~l~vr~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~g~~~~i~  240 (448)
                      ++|||+++|.+||++++|++..+...+...+.|+..........+++.+++++++||++++++|+.++.+|.+|++++++
T Consensus       304 d~HKwl~~P~~~g~llvr~~~~l~~~~~~~~~Yl~~~~~~~~~~~~~~~~~i~~~rr~~alklw~~l~~~G~~g~~~~i~  383 (490)
T PLN02880        304 NAHKWFLTNFDCSLLWVKDRNALIQSLSTNPEFLKNKASQANSVVDYKDWQIPLGRRFRSLKLWMVLRLYGVENLQSYIR  383 (490)
T ss_pred             CchhhcCCCccEEEEEEeCHHHHHHHHccCHHHhcCccccccCCCChhccCcCCCCcccHHHHHHHHHHhCHHHHHHHHH
Confidence            99999999999999999987666566667788887643333345678889999999999999999999999999888666


Q ss_pred             HhhhhccCCCccchhhhhhhhhhhhhhhhhhhhhhhccccccccccCCCCCccccccchhhHHHHHHHHHhcCccHHHHH
Q psy14299        241 NAVDCSRGSMTFSTLLCFDLQGLLHQANATAATYLFQQDKFYDVSFDTGDKSVQCGRKVDAFKLWLMWKARGNLGFRHFV  320 (448)
Q Consensus       241 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~  320 (448)
                      +.                                                                              
T Consensus       384 ~~------------------------------------------------------------------------------  385 (490)
T PLN02880        384 NH------------------------------------------------------------------------------  385 (490)
T ss_pred             HH------------------------------------------------------------------------------
Confidence            54                                                                              


Q ss_pred             HHHHHHHHHHHHHhhcCCCeEEeccCCceeeEEEEeeccCCCccccchhhhhhhhhhhHHHHHHHHhCCcEEEEeeecCC
Q psy14299        321 DNAVDCSRYFLSQISQRPGFRLVIPEFQCTNICFWFIPVSLRDKVEDETWWSTLSKVAPRIKEKLVLGGTLMIGYQPLQH  400 (448)
Q Consensus       321 ~~~~~l~~~~~~~L~~~pg~~l~~~~~~~~~v~f~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~L~~~g~~~~~~~~~~g  400 (448)
                         .++++++.+.|++.|+|+++ .++.+++++|++.|....     +   +..+.++.++.++|.+.|.+++..+.++|
T Consensus       386 ---~~lA~~~~~~l~~~~~~el~-~~~~~~iv~Fr~~~~~~~-----~---~~~~~~n~~l~~~l~~~g~~~v~~t~~~g  453 (490)
T PLN02880        386 ---IKLAKEFEQLVAQDSRFEVV-TPRIFSLVCFRLVPPKNN-----E---DNGNKLNHDLLDAVNSSGKIFISHTVLSG  453 (490)
T ss_pred             ---HHHHHHHHHHHhcCCCEEEe-cCCceEEEEEEEeCCCCC-----h---hhHHHHHHHHHHHHHhCCCEEEEEEEECC
Confidence               45689999999999999999 888999999998764332     1   23466778999999999999999999999


Q ss_pred             cccccEEEEEecCCCCCCHHHHHHHHHHHHHHHHHhHH
Q psy14299        401 RNLHNFFRLVTTCHPASSRQDMDYAIDQIELRGAEVDL  438 (448)
Q Consensus       401 ~~~~~~lRis~~~~~~~t~edid~l~~al~~~~~~~~~  438 (448)
                      +   .++|+|++ ++.++++|++++++.|+++++++..
T Consensus       454 ~---~~lR~~~~-n~~tt~~di~~~~~~i~~~~~~~~~  487 (490)
T PLN02880        454 K---YVLRFAVG-APLTEERHVTAAWKVLQDEASKLLG  487 (490)
T ss_pred             E---EEEEEEec-CCCCCHHHHHHHHHHHHHHHHHHHH
Confidence            8   89999998 8999999999999999999887643

>TIGR03799 NOD_PanD_pyr putative pyridoxal-dependent aspartate 1-decarboxylase

Probab=100.00  E-value=3.4e-47  Score=397.54  Aligned_cols=337  Identities=29%  Similarity=0.487  Sum_probs=277.2

Q ss_pred             ccEEEeCcHHHHHHHHHHHHHHhcCCc------ccccCCC------CCCCeEEEecCCCchHHHHHHHHhCCCCCcEEEE
Q psy14299          3 LKPFLLPGGSISNMYSICLARYRLDPD------TKRKGLS------HLPPLCMFTSEDSHYSMLKAAHWLGIGMDNVIRV   70 (448)
Q Consensus         3 ~~g~~t~ggT~an~~al~~a~~~~~~~------~~~~G~~------~~~~~~Vl~~~~~H~s~~~~~~~~g~~~~~v~~v   70 (448)
                      ++|+||+|||+||++|+++||++..+.      .++.|+.      +.++.+||+++.+|+|+.++++.+|++..+++.|
T Consensus       160 ~~G~~tsGGS~ANl~Al~~AR~~~~~~~~~~~~~~~~gl~~~~~~~~~~~~~v~~S~~~H~S~~kaa~~lglg~~~v~~v  239 (522)
T TIGR03799       160 SLGAFCSGGTVANITALWVARNRLLKADGDFKGVAREGLFAALKHYGYDGLAILVSERGHYSLGKAADVLGIGRDNLIAI  239 (522)
T ss_pred             CCeEEcCchHHHHHHHHHHHHHHhccccccccccccccchhhhhhccCCceEEEECCCchHHHHHHHHHcCCCcccEEEE
Confidence            579999999999999999999875421      3344543      1256789999999999999999999977779999


Q ss_pred             ecCCCCCcCHHHHHHHHHHhhhcCCCcEEEEEeccCCccccccCHHHHHHHHHHcCCEEEEecccccccccccchhhhhc
Q psy14299         71 KTNERGQMICSFLEQTIQTSLAEKKIPLFVNATAGTTVLGAFDPLDEIATVCEKYDLWMHVDACWGGSLIFSEKYSFVLK  150 (448)
Q Consensus        71 ~~~~~g~id~e~Le~~l~~~~~~~~~~~lVv~~~~~t~tG~~~~l~~I~~ia~~~g~~l~VD~A~~~~~~~~~~~~~~~~  150 (448)
                      |++++|+||+++|+++|+++.+++.++..|+.++++|.+|.++|+++|+++|++||+|+|||+||+++.++.++.+..+.
T Consensus       240 p~d~~g~~d~~~L~~~i~~~~~~g~~~~~vvataGtt~tGaiDpl~eIa~i~~~~g~~lHVDaA~gg~~~~~~~~r~~l~  319 (522)
T TIGR03799       240 KTDANNRIDVDALRDKCAELAEQNIKPLAIVGVAGTTETGNIDPLDEMADIAQELGCHFHVDAAWGGATLLSNTYRHLLK  319 (522)
T ss_pred             EeCCCCcCCHHHHHHHHHHHHHCCCCcEEEEEEecCcCCCCcCCHHHHHHHHHHcCCeEEEEchhhhHHHhCHHHHHHhc
Confidence            99999999999999999987777777888899999999999999999999999999999999999999888888888888


Q ss_pred             CCCCccEEEECCccccCCCCceEEEEEeccchhhhhccCCcccccccCcccccccCCCCCcccCCCCchhHHHHHHHHHh
Q psy14299        151 GINRANSVSWNPHKMLGAPLQCSILLIKEKGLLHQANATAATYLFQQDKFYDVSFDTGDKSVQCGRKVDAFKLWLMWKAR  230 (448)
Q Consensus       151 ~~~~aD~~~~s~hK~l~~P~g~G~l~vr~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  230 (448)
                      +++.+|++++|+|||+++|.|||++++|++..+. .+...+.|+....     ..+++.++++++|++.++++|++++.+
T Consensus       320 gle~aDSit~d~HK~l~~P~g~G~llvr~~~~~~-~~~~~~~Yl~~~~-----~~d~~~~~legsR~~~al~lw~aL~~l  393 (522)
T TIGR03799       320 GIERADSVTIDAHKQLYVPMGAGMVLFKDPALMS-AIEHHAEYILRKG-----SKDLGSHTLEGSRPGMAMLVYAGLHII  393 (522)
T ss_pred             CchhCCEEEEChhhcCCcCcccEEEEEeCHHHHH-HhccCcchhcCCC-----CCccccceeecCcchHHHHHHHHHHHH
Confidence            8888999999999999999999999999876543 3455567874322     234667788889888877788777777


Q ss_pred             ChHHHHHHHHHhhhhccCCCccchhhhhhhhhhhhhhhhhhhhhhhccccccccccCCCCCccccccchhhHHHHHHHHH
Q psy14299        231 GNLGFRHFVDNAVDCSRGSMTFSTLLCFDLQGLLHQANATAATYLFQQDKFYDVSFDTGDKSVQCGRKVDAFKLWLMWKA  310 (448)
Q Consensus       231 g~~g~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  310 (448)
                      |..|+++                                                                         
T Consensus       394 G~~G~~~-------------------------------------------------------------------------  400 (522)
T TIGR03799       394 GRKGYEL-------------------------------------------------------------------------  400 (522)
T ss_pred             hHHHHHH-------------------------------------------------------------------------
Confidence            6666665                                                                         


Q ss_pred             hcCccHHHHHHHHHHHHHHHHHHhhcCCCeEEeccCCceeeEEEEeeccCCCcccc------chhhhhhhhhhhHHHHHH
Q psy14299        311 RGNLGFRHFVDNAVDCSRYFLSQISQRPGFRLVIPEFQCTNICFWFIPVSLRDKVE------DETWWSTLSKVAPRIKEK  384 (448)
Q Consensus       311 ~~~~G~~~~~~~~~~l~~~~~~~L~~~pg~~l~~~~~~~~~v~f~~~~~~~~~~~~------~~~~~~~~~~~~~~i~~~  384 (448)
                              ++++..+++++|.+.|++.|+|+++ .+|..++++|++.|+++.....      .+...+.++.++..+.++
T Consensus       401 --------ii~~~~~la~~l~~~L~~~~~~el~-~~p~l~iv~Fr~~p~~~~~~l~~~~~~~~~~~~~~~~~ln~~i~~~  471 (522)
T TIGR03799       401 --------LIDQSIEKAKYFADLIQQQPDFELV-TEPELCLLTYRYVPEEVQQALAKADEEQREKINELLDRLTKFIQKR  471 (522)
T ss_pred             --------HHHHHHHHHHHHHHHHhhCCCeEEe-cCCCccEEEEEEeChhhcccccccchhhhhhHHHHHHHHHHHHHHH
Confidence                    5566677799999999999999999 8889999999998876542210      011224567888999999


Q ss_pred             HHhCCcEEEEeeecCCc----ccccEEEEEecCCCCCCHHHHHHHHHH
Q psy14299        385 LVLGGTLMIGYQPLQHR----NLHNFFRLVTTCHPASSRQDMDYAIDQ  428 (448)
Q Consensus       385 L~~~g~~~~~~~~~~g~----~~~~~lRis~~~~~~~t~edid~l~~a  428 (448)
                      +.+.|..+++.+...+.    .+..++|++++ |+.||++||+.+++-
T Consensus       472 ~~~~G~~~vs~t~l~~~~~~g~~~~~lR~~~~-np~tt~~~i~~~l~~  518 (522)
T TIGR03799       472 QREAGKSFVSRTRLTPAQYDHQPTVVFRVVLA-NPLTTHEILQDILDE  518 (522)
T ss_pred             HHhcCCEEEEEEEecccccCCCCcEEEEEEec-CCCCCHHHHHHHHHH
Confidence            99999999998876521    01257999999 999999999998764

This enzyme is proposed here to be a form of aspartate 1-decarboxylase, pyridoxal-dependent, that represents a non-orthologous displacement to the more widely distributed pyruvoyl-dependent form (TIGR00223). Aspartate 1-decarboxylase makes beta-alanine, used usually in pathothenate biosynthesis, by decarboxylation from asparatate. A number of species with the PanB and PanC enzymes, however, lack PanD. This protein family occurs in a number of Proteobacteria that lack PanD. This enzyme family appears to be a pyridoxal-dependent enzyme (see pfam00282). The family was identified by Partial Phylogenetic Profiling; members in Geobacter sulfurreducens, G. metallireducens, and Pseudoalteromonas atlantica are clustered with the genes for PanB and PanC. We suggest the gene symbol panP (panthothenate biosynthesis enzyme, Pyridoxal-dependent).

>PF00282 Pyridoxal_deC: Pyridoxal-dependent decarboxylase conserved domain; InterPro: IPR002129 Pyridoxal phosphate is the active form of vitamin B6 (pyridoxine or pyridoxal)

Probab=100.00  E-value=1.6e-44  Score=364.86  Aligned_cols=269  Identities=40%  Similarity=0.717  Sum_probs=232.3

Q ss_pred             ccEEEeCcHHHHHHHHHHHHHHhcCCcccccCCCCCCCeEEEecCCCchHHHHHHHHhCCCCCcEEEEecCCCCCcCHHH
Q psy14299          3 LKPFLLPGGSISNMYSICLARYRLDPDTKRKGLSHLPPLCMFTSEDSHYSMLKAAHWLGIGMDNVIRVKTNERGQMICSF   82 (448)
Q Consensus         3 ~~g~~t~ggT~an~~al~~a~~~~~~~~~~~G~~~~~~~~Vl~~~~~H~s~~~~~~~~g~~~~~v~~v~~~~~g~id~e~   82 (448)
                      ++|+||+|||+||++|+.+||++..++.+..|....++.+||+|+.+|+|+.++|+++|+   .++.||++++++||+++
T Consensus       104 ~~G~~t~Ggt~anl~al~aAR~~~~~~~~~~~~~~~~~~~i~~s~~aH~S~~Kaa~~lGl---g~~~I~~~~~~~md~~~  180 (373)
T PF00282_consen  104 AGGVFTSGGTEANLYALLAARERALPRSKAKGVEEIPKPVIYVSEQAHYSIEKAARILGL---GVRKIPTDEDGRMDIEA  180 (373)
T ss_dssp             SEEEEESSHHHHHHHHHHHHHHHHHHHHHHHTTTHCSSEEEEEETTS-THHHHHHHHTTS---EEEEE-BBTTSSB-HHH
T ss_pred             CceeEeccchHHHHHHHHHHHHHHhhhhhhcccccccccccccccccccHHHHhcceeee---EEEEecCCcchhhhHHH
Confidence            689999999999999999999987666666664323567899999999999999999999   59999999999999999


Q ss_pred             HHHHHHHhhhcCCCcEEEEEeccCCccccccCHHHHHHHHHHcCCEEEEecccccccccccchhhhhcCCCCccEEEECC
Q psy14299         83 LEQTIQTSLAEKKIPLFVNATAGTTVLGAFDPLDEIATVCEKYDLWMHVDACWGGSLIFSEKYSFVLKGINRANSVSWNP  162 (448)
Q Consensus        83 Le~~l~~~~~~~~~~~lVv~~~~~t~tG~~~~l~~I~~ia~~~g~~l~VD~A~~~~~~~~~~~~~~~~~~~~aD~~~~s~  162 (448)
                      |+++|+++.++|..|.+|+.+.++|.+|.+||+++|+++|+++++|+|||+|+|+..+..+..+....+++.+||+++++
T Consensus       181 L~~~l~~~~~~g~~p~~vvat~Gtt~~Ga~D~l~~i~~i~~~~~~wlHVDaA~gg~~~~~~~~~~~~~gi~~adSit~d~  260 (373)
T PF00282_consen  181 LEKALEKDIANGKTPFAVVATAGTTNTGAIDPLEEIADICEKYNIWLHVDAAYGGSALLSPEYRHLLFGIERADSITIDP  260 (373)
T ss_dssp             HHHHHHHHHHTTEEEEEEEEEBS-TTTSBB-SHHHHHHHHHHCT-EEEEEETTGGGGGGHCTTGGGGTTGGGESEEEEET
T ss_pred             hhhhhcccccccccceeeeccCCCcccccccCHHHHhhhccccceeeeecccccccccccccccccccccccccccccch
Confidence            99999998888878889999999999999999999999999999999999999998888888888889999999999999


Q ss_pred             ccccCCCCceEEEEEeccchhhhhccCCcccccccCcccccccCCCCCcccCCCCchhHHHHHHHHHhChHHHHHHHHHh
Q psy14299        163 HKMLGAPLQCSILLIKEKGLLHQANATAATYLFQQDKFYDVSFDTGDKSVQCGRKVDAFKLWLMWKARGNLGFRHFVDNA  242 (448)
Q Consensus       163 hK~l~~P~g~G~l~vr~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~g~~~~i~~~  242 (448)
                      |||+++|++||++++|++..+...+...+.|+.......+...++.+++++++|+++++++|+.++.+|.+|+++++++.
T Consensus       261 HK~l~~P~~~~~~l~r~~~~l~~~~~~~~~Yl~~~~~~~~~~~~~~~~tl~~SR~~~alk~w~~l~~~G~~G~~~~i~~~  340 (373)
T PF00282_consen  261 HKWLGVPYGCGVLLVRDKSDLRDAFSINADYLGNDDRESDESYDYGDYTLQGSRRFRALKLWATLKSLGREGYRERIRRC  340 (373)
T ss_dssp             TTTTS-SSS-EEEEESSGGGHHGGGEEEETCTT-S-SSS-GGGCEEEGSSSSSGHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             hhhhcCCccceeEEeecccchHHHhccChhhhcccccccccccccccccccccccchHHHHHHHHHhcCHHHHHHHHHHH
Confidence            99999999999999999987777776788999865544556677888999999999999999999999999998866654


Q ss_pred             hhhccCCCccchhhhhhhhhhhhhhhhhhhhhhhccccccccccCCCCCccccccchhhHHHHHHHHHhcCccHHHHHHH
Q psy14299        243 VDCSRGSMTFSTLLCFDLQGLLHQANATAATYLFQQDKFYDVSFDTGDKSVQCGRKVDAFKLWLMWKARGNLGFRHFVDN  322 (448)
Q Consensus       243 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~  322 (448)
                      +                                                                               
T Consensus       341 ~-------------------------------------------------------------------------------  341 (373)
T PF00282_consen  341 I-------------------------------------------------------------------------------  341 (373)
T ss_dssp             H-------------------------------------------------------------------------------
T ss_pred             H-------------------------------------------------------------------------------
Confidence            4                                                                               


Q ss_pred             HHHHHHHHHHHhhcCCCeEEeccCCceeeEEEEe
Q psy14299        323 AVDCSRYFLSQISQRPGFRLVIPEFQCTNICFWF  356 (448)
Q Consensus       323 ~~~l~~~~~~~L~~~pg~~l~~~~~~~~~v~f~~  356 (448)
                        ++++++.+.|++.|+|+++ .++..++|||++
T Consensus       342 --~~a~~l~~~l~~~~~~el~-~~~~~~~vcFr~  372 (373)
T PF00282_consen  342 --ELARYLADRLRKDPRFELV-NEPDLNIVCFRY  372 (373)
T ss_dssp             --HHHHHHHHHHHTSTTEEES-STTSSSEEEEEE
T ss_pred             --HHHHHHHHHHHhCCCEEEE-cCCCceEEEEEe
Confidence              4599999999999999999 899999999986

Pyridoxal 5'-phosphate (PLP) is a versatile catalyst, acting as a coenzyme in a multitude of reactions, including decarboxylation, deamination and transamination [, , ]. PLP-dependent enzymes are primarily involved in the biosynthesis of amino acids and amino acid-derived metabolites, but they are also found in the biosynthetic pathways of amino sugars and in the synthesis or catabolism of neurotransmitters; pyridoxal phosphate can also inhibit DNA polymerases and several steroid receptors []. Inadequate levels of pyridoxal phosphate in the brain can cause neurological dysfunction, particularly epilepsy []. PLP enzymes exist in their resting state as a Schiff base, the aldehyde group of PLP forming a linkage with the epsilon-amino group of an active site lysine residue on the enzyme. The alpha-amino group of the substrate displaces the lysine epsilon-amino group, in the process forming a new aldimine with the substrate. This aldimine is the common central intermediate for all PLP-catalysed reactions, enzymatic and non-enzymatic []. A number of pyridoxal-dependent decarboxylases share regions of sequence similarity, particularly in the vicinity of a conserved lysine residue, which provides the attachment site for the pyridoxal-phosphate (PLP) group [, ]. Among these enzymes are aromatic-L-amino-acid decarboxylase (L-dopa decarboxylase or tryptophan decarboxylase), which catalyses the decarboxylation of tryptophan to tryptamine []; tyrosine decarboxylase, which converts tyrosine into tyramine; and histidine decarboxylase, which catalyses the decarboxylation of histidine to histamine []. These enzymes belong to the group II decarboxylases [, ].; GO: 0016831 carboxy-lyase activity, 0030170 pyridoxal phosphate binding, 0019752 carboxylic acid metabolic process; PDB: 3MC6_A 1XEY_A 1ES0_B 2OKK_A 2JIS_B 2QMA_A 3MAF_B 3MAD_B 3MAU_A 3MBB_A ....

>KOG0628|consensus

Probab=100.00  E-value=6.4e-41  Score=328.68  Aligned_cols=330  Identities=26%  Similarity=0.408  Sum_probs=296.3

Q ss_pred             CccEEEeCcHHHHHHHHHHHHHHhcCCcccccC--C---CCCCCeEEEecCCCchHHHHHHHHhCCCCCcEEEEecCCCC
Q psy14299          2 NLKPFLLPGGSISNMYSICLARYRLDPDTKRKG--L---SHLPPLCMFTSEDSHYSMLKAAHWLGIGMDNVIRVKTNERG   76 (448)
Q Consensus         2 ~~~g~~t~ggT~an~~al~~a~~~~~~~~~~~G--~---~~~~~~~Vl~~~~~H~s~~~~~~~~g~~~~~v~~v~~~~~g   76 (448)
                      +++|++-.++|+++++++.+||.....+++..-  +   .-..+.++|+|+++|.|+.++|.+.++   +++.++.+.+.
T Consensus       139 ~GgGviQ~tases~lvallaaR~~~i~~~k~~~p~~~e~~~~~~lV~Y~SDqahssveka~~i~~V---klR~l~td~n~  215 (511)
T KOG0628|consen  139 DGGGVIQGTASESVLVALLAARTEKIEEIKSRPPELHESSVLARLVAYCSDQAHSSVEKACLIAGV---KLRALPTDENF  215 (511)
T ss_pred             CCcceEecCcchhHHHHHHHHHHHHHHHhhcCCCcccchhhhhhheEEecCcccchHHHhHhhcce---eEEEeecccCc
Confidence            578999999999999999999987654443321  0   013567899999999999999999999   79999999999


Q ss_pred             CcCHHHHHHHHHHhhhcCCCcEEEEEeccCCccccccCHHHHHHHHHHcCCEEEEecccccccccccchhhhhcCCCCcc
Q psy14299         77 QMICSFLEQTIQTSLAEKKIPLFVNATAGTTVLGAFDPLDEIATVCEKYDLWMHVDACWGGSLIFSEKYSFVLKGINRAN  156 (448)
Q Consensus        77 ~id~e~Le~~l~~~~~~~~~~~lVv~~~~~t~tG~~~~l~~I~~ia~~~g~~l~VD~A~~~~~~~~~~~~~~~~~~~~aD  156 (448)
                      .|+.+.|.++|+++.++|..|..|+++.|+|.+..+|+|++|+.+|+++|+|+|||+||++.++.+++.+....|++.||
T Consensus       216 ~mr~~~L~~AIe~D~arGlIPf~v~at~GTT~~ca~D~l~elg~Vc~~~glWLHVDAAYAGsa~iCpE~r~l~rGie~aD  295 (511)
T KOG0628|consen  216 GMRGDTLRKAIEEDIARGLIPFFVCATLGTTSSCAFDELEELGPVCREEGLWLHVDAAYAGSAFICPEFRYLMRGIEYAD  295 (511)
T ss_pred             CCCHHHHHHHHHHHHhCCCccEEEEEeecCccccccccHHHhcchhhhcCEEEEeehhhccccccCHHHHHHhhcchhhc
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             EEEECCccccCCCCceEEEEEeccchhhhhccCCcccccccCcccccccCCCCCcccCCCCchhHHHHHHHHHhChHHHH
Q psy14299        157 SVSWNPHKMLGAPLQCSILLIKEKGLLHQANATAATYLFQQDKFYDVSFDTGDKSVQCGRKVDAFKLWLMWKARGNLGFR  236 (448)
Q Consensus       157 ~~~~s~hK~l~~P~g~G~l~vr~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~g~~  236 (448)
                      ++.+++|||+.....|+.|++++...+...++..+-|+.....  ....|+++|.++.+|||+++++|++++.+|.++++
T Consensus       296 Sfn~n~hK~~~vnfDCs~lWvkd~~~~~~~~~vdp~yL~h~~~--~~~~Dyrhwqipl~rRfRSLKlWfv~R~~Gve~lq  373 (511)
T KOG0628|consen  296 SFNFNPHKWLLVNFDCSPLWVKDGTKLSRAFNVDPLYLKHAYQ--GSAPDYRHWQIPLGRRFRSLKLWFVLRSYGVENLQ  373 (511)
T ss_pred             cccCChhheeEEeeeeecceeecCceeeeeeecChHhhcchhh--ccCCCccccccccccchhhHHHHHHHHHHhHHHHH
Confidence            9999999999999999999999997788877788888865442  34789999999999999999999999999999999


Q ss_pred             HHHHHhhhhccCCCccchhhhhhhhhhhhhhhhhhhhhhhccccccccccCCCCCccccccchhhHHHHHHHHHhcCccH
Q psy14299        237 HFVDNAVDCSRGSMTFSTLLCFDLQGLLHQANATAATYLFQQDKFYDVSFDTGDKSVQCGRKVDAFKLWLMWKARGNLGF  316 (448)
Q Consensus       237 ~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~  316 (448)
                      ++++++.+                                                                        
T Consensus       374 ~~iR~h~~------------------------------------------------------------------------  381 (511)
T KOG0628|consen  374 NYIREHVR------------------------------------------------------------------------  381 (511)
T ss_pred             HHHHHHHH------------------------------------------------------------------------
Confidence            97776554                                                                        


Q ss_pred             HHHHHHHHHHHHHHHHHhhcCCCeEEeccCCceeeEEEEeeccCCCccccchhhhhhhhhhhHHHHHHHHhCCcEEEEee
Q psy14299        317 RHFVDNAVDCSRYFLSQISQRPGFRLVIPEFQCTNICFWFIPVSLRDKVEDETWWSTLSKVAPRIKEKLVLGGTLMIGYQ  396 (448)
Q Consensus       317 ~~~~~~~~~l~~~~~~~L~~~pg~~l~~~~~~~~~v~f~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~L~~~g~~~~~~~  396 (448)
                               |++.|.+.+.+-|.|+++ .+...+.+|||..+.               |..++++++++...|.+++.+.
T Consensus       382 ---------La~~fe~lv~~d~~FE~~-~~~~lgLvcFRlk~~---------------N~~ne~Ll~~in~~g~i~l~~~  436 (511)
T KOG0628|consen  382 ---------LAKEFETLVRADPRFEIV-NKRILGLVCFRLKGD---------------NEINEALLNRLNSSGRIHLVPA  436 (511)
T ss_pred             ---------HHHHHHHHhhcCCcceee-cccccceeEEeecCC---------------cHHHHHHHHHHHhcCcEEEEEe
Confidence                     588999999999999998 888899999997542               4567899999999999999999


Q ss_pred             ecCCcccccEEEEEecCCCCCCHHHHHHHHHHHHHHHHHhH
Q psy14299        397 PLQHRNLHNFFRLVTTCHPASSRQDMDYAIDQIELRGAEVD  437 (448)
Q Consensus       397 ~~~g~~~~~~lRis~~~~~~~t~edid~l~~al~~~~~~~~  437 (448)
                      .+.|+   ..+|++++ +..++++||++..+.|.+.+.++.
T Consensus       437 ~l~gk---~vlRf~V~-s~~t~~~di~~a~~~I~~~a~~l~  473 (511)
T KOG0628|consen  437 SLHGK---FVLRFAVC-SPLTNESDIDEAWKIIFEAADELF  473 (511)
T ss_pred             eecce---EEEEEEec-CCCCcHHHHHHHHHHHHHHHHHHH
Confidence            99998   89999998 899999999999999999887754

>PLN02263 serine decarboxylase

Probab=100.00  E-value=1.8e-39  Score=331.41  Aligned_cols=286  Identities=22%  Similarity=0.379  Sum_probs=232.8

Q ss_pred             ccEEEeCcHHHHHHHHHHHHHHhcCCcccccCCCCCCCeEEEecCCCchHHHHHHHHhCCCCCcEEEEecCCCCCcCHHH
Q psy14299          3 LKPFLLPGGSISNMYSICLARYRLDPDTKRKGLSHLPPLCMFTSEDSHYSMLKAAHWLGIGMDNVIRVKTNERGQMICSF   82 (448)
Q Consensus         3 ~~g~~t~ggT~an~~al~~a~~~~~~~~~~~G~~~~~~~~Vl~~~~~H~s~~~~~~~~g~~~~~v~~v~~~~~g~id~e~   82 (448)
                      .+|++|+||||||++|+++||+..            ++.++|+|+.+|+|+.|+++++|+   +++.||++++++||+++
T Consensus       153 ~~G~vtsGGTEaNL~Al~aARe~~------------~~~vvy~S~~aH~Sv~KAa~llgi---~~~~Vp~d~~g~mD~~a  217 (470)
T PLN02263        153 YWGYITNCGTEGNLHGILVGREVF------------PDGILYASRESHYSVFKAARMYRM---ECVKVDTLVSGEIDCAD  217 (470)
T ss_pred             CeEEEeCcHHHHHHHHHHHHHhhc------------CCcEEEEcCCccHHHHHHHHhcCC---cceEeccCCCCcCcHHH
Confidence            479999999999999999999862            455799999999999999999999   78999999999999999


Q ss_pred             HHHHHHHhhhcCCCcEEEEEeccCCccccccCHHHHHHHHHHcCC-----EEEEecccccccccccchhhhhcCCCCccE
Q psy14299         83 LEQTIQTSLAEKKIPLFVNATAGTTVLGAFDPLDEIATVCEKYDL-----WMHVDACWGGSLIFSEKYSFVLKGINRANS  157 (448)
Q Consensus        83 Le~~l~~~~~~~~~~~lVv~~~~~t~tG~~~~l~~I~~ia~~~g~-----~l~VD~A~~~~~~~~~~~~~~~~~~~~aD~  157 (448)
                      |+++|.++   ..+|.+|+.+.|+|++|.+|||++|+++|++||+     |+|||||+|+..++.-.....++....+||
T Consensus       218 L~~aI~~d---~~~P~iVvataGTT~~GAiDpi~eIa~i~~~~g~~~~~iwlHVDAA~GG~~lPf~~~~~~~df~~~vDS  294 (470)
T PLN02263        218 FKAKLLAN---KDKPAIINVNIGTTVKGAVDDLDLVIKTLEECGFSQDRFYIHCDGALFGLMMPFVKRAPKVTFKKPIGS  294 (470)
T ss_pred             HHHHHHhC---CCCcEEEEEEecCCCCcCCCCHHHHHHHHHHcCCccCCeeEEEeccchhhHhhhcccccccCCCcCccE
Confidence            99999764   2368899999999999999999999999999997     999999999988855433333445556999


Q ss_pred             EEECCccccCCCCceEEEEEeccchhhhhccCCcccccccCcccccccCCCCCcccCCCCc-hhHHHHHHHHHhChHHHH
Q psy14299        158 VSWNPHKMLGAPLQCSILLIKEKGLLHQANATAATYLFQQDKFYDVSFDTGDKSVQCGRKV-DAFKLWLMWKARGNLGFR  236 (448)
Q Consensus       158 ~~~s~hK~l~~P~g~G~l~vr~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~g~~g~~  236 (448)
                      +++|+|||+++|.+||++++|++. + ..++..+.|+...+           .++.++|++ .++++|++++.+|.+|++
T Consensus       295 IsvD~HK~l~~P~~cgvll~R~~~-~-~~~~~~~~Yl~~~d-----------~ti~gSR~g~~al~lW~~L~~~G~~G~~  361 (470)
T PLN02263        295 VSVSGHKFVGCPMPCGVQITRMEH-I-NVLSSNVEYLASRD-----------ATIMGSRNGHAPIFLWYTLNRKGYRGFQ  361 (470)
T ss_pred             EEECCccccCCCcCEEEEEEehhh-H-hhhccChHhhCCCC-----------CCcCCCCCcHHHHHHHHHHHHhCHHHHH
Confidence            999999999999999999999753 2 34456678886532           357889997 478999999999999988


Q ss_pred             HHHHHhhhhccCCCccchhhhhhhhhhhhhhhhhhhhhhhccccccccccCCCCCccccccchhhHHHHHHHHHhcCccH
Q psy14299        237 HFVDNAVDCSRGSMTFSTLLCFDLQGLLHQANATAATYLFQQDKFYDVSFDTGDKSVQCGRKVDAFKLWLMWKARGNLGF  316 (448)
Q Consensus       237 ~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~  316 (448)
                      +.+++.                                                                          
T Consensus       362 ~~i~~~--------------------------------------------------------------------------  367 (470)
T PLN02263        362 KEVQKC--------------------------------------------------------------------------  367 (470)
T ss_pred             HHHHHH--------------------------------------------------------------------------
Confidence            866654                                                                          


Q ss_pred             HHHHHHHHHHHHHHHHHhhcCCCeEEeccCCceeeEEEEeeccCCCccccchhhhhhhhhhhHHHHHHHHhCCcEEEEee
Q psy14299        317 RHFVDNAVDCSRYFLSQISQRPGFRLVIPEFQCTNICFWFIPVSLRDKVEDETWWSTLSKVAPRIKEKLVLGGTLMIGYQ  396 (448)
Q Consensus       317 ~~~~~~~~~l~~~~~~~L~~~pg~~l~~~~~~~~~v~f~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~L~~~g~~~~~~~  396 (448)
                             .++++++.++|+++ |++++ ..|..++++|+. |   .                    +....+|+... . 
T Consensus       368 -------~~~A~~l~~~l~~~-g~~~~-~~p~s~~V~f~~-p---~--------------------~~~~~~gW~L~-~-  412 (470)
T PLN02263        368 -------LRNAHYLKDRLREA-GISAM-LNELSSTVVFER-P---K--------------------DEEFVRRWQLA-C-  412 (470)
T ss_pred             -------HHHHHHHHHHHHhC-CCeEE-eCCCceEEEEec-C---c--------------------hHHhhcceEEc-c-
Confidence                   45589999999998 88877 678889999863 1   0                    11134564322 2 


Q ss_pred             ecCCcccccEEEEEecCCCCCCHHHHHHHHHHHHHHHHHh
Q psy14299        397 PLQHRNLHNFFRLVTTCHPASSRQDMDYAIDQIELRGAEV  436 (448)
Q Consensus       397 ~~~g~~~~~~lRis~~~~~~~t~edid~l~~al~~~~~~~  436 (448)
                        .+    ..+|+++|  +..+++.+|.|++.|++..+..
T Consensus       413 --~~----~~~Hivvm--phv~~~~id~fi~DL~~~~~~~  444 (470)
T PLN02263        413 --QG----NIAHVVVM--PSVTIEKLDYFLKELVEKRSTW  444 (470)
T ss_pred             --CC----CcEEEEEc--CCCCHHHHHHHHHHHHHHHhhh
Confidence              11    46999996  6778999999999999887754

>TIGR01788 Glu-decarb-GAD glutamate decarboxylase

Probab=100.00  E-value=2.8e-39  Score=331.55  Aligned_cols=315  Identities=16%  Similarity=0.181  Sum_probs=240.7

Q ss_pred             ccEEEeCcHHHHHHHHHHHHHHhcCCcccccCCCCCCCeEEEecCCCchHHHHHHHHhCCCCCcEEEEecCCC-CCcCHH
Q psy14299          3 LKPFLLPGGSISNMYSICLARYRLDPDTKRKGLSHLPPLCMFTSEDSHYSMLKAAHWLGIGMDNVIRVKTNER-GQMICS   81 (448)
Q Consensus         3 ~~g~~t~ggT~an~~al~~a~~~~~~~~~~~G~~~~~~~~Vl~~~~~H~s~~~~~~~~g~~~~~v~~v~~~~~-g~id~e   81 (448)
                      ..|++|+||||||++|+.+++.+...+.++.|.. .++..||+++.+|+|+.++++++|+   +++.||++++ +.+|++
T Consensus       102 ~~g~~TsGgTEAn~~al~~ar~~~~~~~~~~g~~-~~~~~ii~s~~~H~sv~ka~~~lg~---~v~~i~~d~~~~~vd~~  177 (431)
T TIGR01788       102 AVGTSTIGSSEAIMLGGLAMKWRWRKRMEAAGKP-TDKPNLVMGSNVQVCWEKFARYFDV---ELREVPMDPGRYVIDPE  177 (431)
T ss_pred             CeEEEechHHHHHHHHHHHHHHHHHHHHHhcCCC-CCCcEEEEcCcchHHHHHHHHHcCc---eeEEEecCCCceeeCHH
Confidence            4567799999999999988875321111222221 1245799999999999999999998   7999999876 599999


Q ss_pred             HHHHHHHHhhhcCCCcEEEEEeccCCccccccCHHHHHHHHHHc------CCEEEEecccccccccc--cchhhhhcCCC
Q psy14299         82 FLEQTIQTSLAEKKIPLFVNATAGTTVLGAFDPLDEIATVCEKY------DLWMHVDACWGGSLIFS--EKYSFVLKGIN  153 (448)
Q Consensus        82 ~Le~~l~~~~~~~~~~~lVv~~~~~t~tG~~~~l~~I~~ia~~~------g~~l~VD~A~~~~~~~~--~~~~~~~~~~~  153 (448)
                      +|+++|++      .+.+|++++++|.+|.++|+++|+++|+++      |+|+|||+||++++.++  +..+..+. +.
T Consensus       178 ~L~~~i~~------~t~lV~~t~g~t~tG~idpi~~I~~i~~~~~~~~~~~~~~HvDaaq~g~~~p~~~~~~~~~~~-~~  250 (431)
T TIGR01788       178 QVVEAVDE------NTIGVVCILGTTYTGEYEDVKALNDALDEYNAKTGWDIPIHVDAASGGFIAPFVYPDLEWDFR-LP  250 (431)
T ss_pred             HHHHHHhh------CCeEEEEEeCCCCCcccCCHHHHHHHHHHHHhhhCCCceEEEecccHHHHHHHhCCCchhhcC-CC
Confidence            99999976      478999999999999999999999999999      99999999999887643  33333333 56


Q ss_pred             CccEEEECCccccCCCCceEEEEEeccchhhhhccCCcccccccCcccccccCCCCCcccCCCCc-hhHHHHHHHHHhCh
Q psy14299        154 RANSVSWNPHKMLGAPLQCSILLIKEKGLLHQANATAATYLFQQDKFYDVSFDTGDKSVQCGRKV-DAFKLWLMWKARGN  232 (448)
Q Consensus       154 ~aD~~~~s~hK~l~~P~g~G~l~vr~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~g~  232 (448)
                      .+|++++|+|||+++|+|+|++++|++..+...+...+.|+....         .+.+++++|++ .+++.|+.++.+|.
T Consensus       251 ~~DSis~s~HK~~~~P~g~G~l~~r~~~~l~~~~~~~~~yl~~~~---------~~~t~~~sR~g~~al~~w~~l~~lG~  321 (431)
T TIGR01788       251 RVKSINVSGHKYGLVYPGVGWVIWRDEEALPEELIFHVNYLGGDE---------PTFTLNFSRPANQVIAQYYNFLRLGR  321 (431)
T ss_pred             CceEEEECchhccCCCCCcEEEEEeChHHcchhheecccccCCCC---------CCcceecCchHHHHHHHHHHHHHhcH
Confidence            799999999999999999999999987544444444566764321         12456667764 44555655555554


Q ss_pred             HHHHHHHHHhhhhccCCCccchhhhhhhhhhhhhhhhhhhhhhhccccccccccCCCCCccccccchhhHHHHHHHHHhc
Q psy14299        233 LGFRHFVDNAVDCSRGSMTFSTLLCFDLQGLLHQANATAATYLFQQDKFYDVSFDTGDKSVQCGRKVDAFKLWLMWKARG  312 (448)
Q Consensus       233 ~g~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  312 (448)
                      .                                                                               
T Consensus       322 ~-------------------------------------------------------------------------------  322 (431)
T TIGR01788       322 E-------------------------------------------------------------------------------  322 (431)
T ss_pred             H-------------------------------------------------------------------------------
Confidence            4                                                                               


Q ss_pred             CccHHHHHHHHHHHHHHHHHHhhcCCCeEEeccC-CceeeEEEEeeccCCCccccchhhhhhhhhhhHHHHHHHHhCCcE
Q psy14299        313 NLGFRHFVDNAVDCSRYFLSQISQRPGFRLVIPE-FQCTNICFWFIPVSLRDKVEDETWWSTLSKVAPRIKEKLVLGGTL  391 (448)
Q Consensus       313 ~~G~~~~~~~~~~l~~~~~~~L~~~pg~~l~~~~-~~~~~v~f~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~L~~~g~~  391 (448)
                        |++++.++..++++++.++|+++|+|+++ .+ +..++++|++.+.+-            .+..+.++.++|.++|+.
T Consensus       323 --G~~~i~~~~~~la~~l~~~L~~~~~~el~-~~~~~~~iV~Fr~~~~~~------------~~~~~~~l~~~L~~~G~~  387 (431)
T TIGR01788       323 --GYRKIMQNSLDVARYLAEEIAKLGPFEII-SDGSGIPLVAFKLKDDAD------------PGYTLYDLSHRLRERGWI  387 (431)
T ss_pred             --HHHHHHHHHHHHHHHHHHHHHhCCCEEEe-eCCCCceEEEEEeCCCCC------------CCcCHHHHHHHHHHCCCc
Confidence              55556677788899999999999999999 65 789999999865320            011235789999999965


Q ss_pred             EE---EeeecCCcccccEEEEEecCCCCCCHHHHHHHHHHHHHHHHHh
Q psy14299        392 MI---GYQPLQHRNLHNFFRLVTTCHPASSRQDMDYAIDQIELRGAEV  436 (448)
Q Consensus       392 ~~---~~~~~~g~~~~~~lRis~~~~~~~t~edid~l~~al~~~~~~~  436 (448)
                      +.   .|..+.|.   .++|++++  +..+++.++.+++.|+++...+
T Consensus       388 ~~~~~~p~~~~~~---~~lR~~~~--~~~~~~~~~~~~~~~~~~~~~~  430 (431)
T TIGR01788       388 VPAYTLPKNAEDI---VVMRIVVR--EGFSRDLAELLIEDIEAALAYL  430 (431)
T ss_pred             ccCCCCCCccCCe---EEEEEEec--CCCCHHHHHHHHHHHHHHHHhh
Confidence            43   33345565   78999995  7889999999999999988654

This model represents the pyridoxal phosphate-dependent glutamate (alpha) decarboxylase found in bacteria (low and hi-GC gram positive, proteobacteria and cyanobacteria), plants, fungi and at least one archaon (Methanosarcina). The product of the enzyme is gamma-aminobutyrate (GABA).

>TIGR03811 tyr_de_CO2_Ent tyrosine decarboxylase, Enterococcus type

Probab=100.00  E-value=3.2e-38  Score=332.65  Aligned_cols=340  Identities=22%  Similarity=0.288  Sum_probs=257.2

Q ss_pred             ccEEEeCcHHHHHHHHHHHHHHhc-CC----cc-----------------------------------cccC----CCCC
Q psy14299          3 LKPFLLPGGSISNMYSICLARYRL-DP----DT-----------------------------------KRKG----LSHL   38 (448)
Q Consensus         3 ~~g~~t~ggT~an~~al~~a~~~~-~~----~~-----------------------------------~~~G----~~~~   38 (448)
                      .+|+||+|||+||+.|+++||+.. .|    +.                                   ++.+    ....
T Consensus       141 ~~G~~TsGGT~ANl~aL~~AR~~k~~p~a~~~~~~~~~~~~~~w~l~n~~~~~~~~l~~~~~~~~~~~~~~~~~~g~~~~  220 (608)
T TIGR03811       141 GWGHIVADGSLANLEGLWYARNIKSLPFAMKEVKPELVAGKSDWELLNMPTKEIMDLLESAGDQIDEIKAHSARSGKDLQ  220 (608)
T ss_pred             CCeEEeCChHHHHHHHHHHHHHhhhccchhhhccccccccccchhhcccccccccccccccccchhhhhhhccccccccc
Confidence            579999999999999999999853 11    00                                   0001    0001


Q ss_pred             CCeEEEecCCCchHHHHHHHHhCCCCCcEEEEecCCCCCcCHHHHHHHHHHhhhcCCCcEEEEEeccCCccccccCHHHH
Q psy14299         39 PPLCMFTSEDSHYSMLKAAHWLGIGMDNVIRVKTNERGQMICSFLEQTIQTSLAEKKIPLFVNATAGTTVLGAFDPLDEI  118 (448)
Q Consensus        39 ~~~~Vl~~~~~H~s~~~~~~~~g~~~~~v~~v~~~~~g~id~e~Le~~l~~~~~~~~~~~lVv~~~~~t~tG~~~~l~~I  118 (448)
                      +-.++++|..+|+|+.|++.++|++..+++.||+|++++||+++|++.|+++.+++..|..|+.+.|+|.+|.+|||++|
T Consensus       221 ~~~~vl~s~~aHyS~~KAa~ilGlG~~~vv~VpvD~~~rmd~~~L~~~I~~~~~~g~p~~~VVataGTT~~GaiDpl~eI  300 (608)
T TIGR03811       221 KLGKWLVPQTKHYSWLKAADIIGIGLDQVIPVPVDSNYRMDINELEKIIRKLAAEKTPILGVVGVVGSTEEGAVDGIDKI  300 (608)
T ss_pred             cceEEEECCCccHHHHHHHHHcCCCcccEEEeecCCCCcCCHHHHHHHHHHHHhcCCCeEEEEEEcCCcCCcccCCHHHH
Confidence            11269999999999999999999998889999999999999999999999988888788899999999999999999999


Q ss_pred             HHHH---HHcCC--EEEEeccccccc--ccc------------------------------cchhhhhcCCCCccEEEEC
Q psy14299        119 ATVC---EKYDL--WMHVDACWGGSL--IFS------------------------------EKYSFVLKGINRANSVSWN  161 (448)
Q Consensus       119 ~~ia---~~~g~--~l~VD~A~~~~~--~~~------------------------------~~~~~~~~~~~~aD~~~~s  161 (448)
                      +++|   +++|+  |+|||||+|+..  ++.                              ++....+.+++.|||++++
T Consensus       301 ~~l~~~~~~~gl~~~lHVDAAyGG~~~~l~~~~~~~~~p~~~~~~~~~~~~~f~~~~~~l~~~~~~~l~gle~ADSItvD  380 (608)
T TIGR03811       301 VALRNKLMKEGIYFYLHVDAAYGGYGRAIFLDEDDNFIPYDDLQEVHAEYGVFTEKKEYISREVYNAYKAISEAESVTID  380 (608)
T ss_pred             HHHHHHHHHcCCceeEeeeccccchhhhhhccccccccccchhhcccccccccccccccccHhHHHHHhcCcCceEEEeC
Confidence            9999   67898  699999999964  222                              2334567789999999999


Q ss_pred             CccccCCCCceEEEEEeccchhhhhccCCcccccccCcccccccCCCCCcccCCCC-chhHHHHHHHHHh--ChHHHHHH
Q psy14299        162 PHKMLGAPLQCSILLIKEKGLLHQANATAATYLFQQDKFYDVSFDTGDKSVQCGRK-VDAFKLWLMWKAR--GNLGFRHF  238 (448)
Q Consensus       162 ~hK~l~~P~g~G~l~vr~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~--g~~g~~~~  238 (448)
                      +|||++.|++||++++|++. +....+..++|++.....  .....+.++++++|+ ++++++|++++.+  |.+|+.+.
T Consensus       381 pHK~g~~Py~~G~ll~Rd~~-~~~~~~~~a~Yl~~~~~~--~p~~~g~~~legSR~ga~AlklW~~lr~l~~G~~Gyg~~  457 (608)
T TIGR03811       381 PHKMGYIPYSAGGIVIQDIR-MRDVISYFATYVFEKGAD--IPALLGAYILEGSKAGATAASVWAAHKVLPLNVTGYGKL  457 (608)
T ss_pred             cccccccCCCeEEEEEeCHH-HHHHHhcCcchhcccccc--CcccccccceecCCccHHHHHHHHHHHHHhcCHHHHHHH
Confidence            99999999999999999986 455556788998753321  112456677777876 5688899998887  78888876


Q ss_pred             HHHhhhhccCCCccchhhhhhhhhhhhhhhhhhhhhhhccccccccccCCCCCccccccchhhHHHHHHHHHhcCccHHH
Q psy14299        239 VDNAVDCSRGSMTFSTLLCFDLQGLLHQANATAATYLFQQDKFYDVSFDTGDKSVQCGRKVDAFKLWLMWKARGNLGFRH  318 (448)
Q Consensus       239 i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~  318 (448)
                      +++                                                                             
T Consensus       458 i~~-----------------------------------------------------------------------------  460 (608)
T TIGR03811       458 IGA-----------------------------------------------------------------------------  460 (608)
T ss_pred             HHH-----------------------------------------------------------------------------
Confidence            555                                                                             


Q ss_pred             HHHHHHHHHHHHHHHhhc------CCCeEE--eccCCceeeEEEEeeccCCCccccchhhhhhhhhhhHHHHHHHH-h--
Q psy14299        319 FVDNAVDCSRYFLSQISQ------RPGFRL--VIPEFQCTNICFWFIPVSLRDKVEDETWWSTLSKVAPRIKEKLV-L--  387 (448)
Q Consensus       319 ~~~~~~~l~~~~~~~L~~------~pg~~l--~~~~~~~~~v~f~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~L~-~--  387 (448)
                          ..++++++.+.|.+      .|.|++  + .+|..++++|++.|++.++       .+..|..+.++.+++- .  
T Consensus       461 ----~i~~A~~~~~~L~~~~~~~~~~~~el~~~-~~pdlniV~Fr~~~~g~~~-------l~~~n~ln~~i~~~~~~~~g  528 (608)
T TIGR03811       461 ----SIEGAHRFYDFLNNLEFKVGDKEIEVHPL-TKPDFNMVDYVFNEKGNDD-------LVKMNKLNHAFYDYASYVKG  528 (608)
T ss_pred             ----HHHHHHHHHHHHHhcccccCCCCeeEEec-CCCCcceEEEEEecCCCcc-------HHHHHHHHHHHHHhhccccC
Confidence                44558888888888      466776  6 7899999999998876432       2356777778888876 1  


Q ss_pred             ---CCcEEEEeeecC---------------Cc--------ccccEEEEEecCCCCCCH-HHHHHHHHHHHHHHHH
Q psy14299        388 ---GGTLMIGYQPLQ---------------HR--------NLHNFFRLVTTCHPASSR-QDMDYAIDQIELRGAE  435 (448)
Q Consensus       388 ---~g~~~~~~~~~~---------------g~--------~~~~~lRis~~~~~~~t~-edid~l~~al~~~~~~  435 (448)
                         ..-++++.+.+.               |-        ..-..+|.++| +++.++ +-++.+++.|+++..+
T Consensus       529 ~~~~~~~~~s~t~~~~~~yg~~~~~~~~~~~~~~~~~~~~~~~~~lr~~~m-~p~~~~~~~~~~~~~~~~~~~~~  602 (608)
T TIGR03811       529 SIYNNEFITSHTDFAIPDYGDSPFAFVNSLGFSDEEWQRAGKVTILRASVM-TPYMNDKENFDEYAPKIKAAMQE  602 (608)
T ss_pred             CCCCcceEeeecccccchhhhhHHHHHHHcCCChhhhccCCceEEEEEEec-CcccCChhhHHHHHHHHHHHHHH
Confidence               111333322111               10        01147999999 677555 6688888888877654

This model represents tyrosine decarboxylases in the family of the Enterococcus faecalis enzyme Tdc. These enzymes often are encoded next to tyrosine/tyramine antiporter, together comprising a system in which tyrosine decarboxylation can protect against exposure to acid conditions. This clade differs from the archaeal tyrosine decarboxylases associated with methanofuran biosynthesis.

>PLN03032 serine decarboxylase; Provisional

Probab=100.00  E-value=1.5e-37  Score=312.65  Aligned_cols=282  Identities=22%  Similarity=0.360  Sum_probs=223.3

Q ss_pred             ccEEEeCcHHHHHHHHHHHHHHhcCCcccccCCCCCCCeEEEecCCCchHHHHHHHHhCCCCCcEEEEecCCCCCcCHHH
Q psy14299          3 LKPFLLPGGSISNMYSICLARYRLDPDTKRKGLSHLPPLCMFTSEDSHYSMLKAAHWLGIGMDNVIRVKTNERGQMICSF   82 (448)
Q Consensus         3 ~~g~~t~ggT~an~~al~~a~~~~~~~~~~~G~~~~~~~~Vl~~~~~H~s~~~~~~~~g~~~~~v~~v~~~~~g~id~e~   82 (448)
                      .+|+||+||||||++|+.++|+..            ++.+|+++..+|+|+.++++++|+   .++.||++++|++|+++
T Consensus        86 ~~G~fTsGGTEaNl~al~~ar~~~------------~~~~vi~s~~~H~Sv~kaa~~lg~---~~~~V~~d~~g~id~~~  150 (374)
T PLN03032         86 YWGYITTCGTEGNLHGILVGREVF------------PDGILYASRESHYSVFKAARMYRM---EAVKVPTLPSGEIDYDD  150 (374)
T ss_pred             CCEEEeCchHHHHHHHHHHHHHhC------------CCcEEEeCCCceeHHHHHHHHcCC---CCeEeeeCCCCcCcHHH
Confidence            368999999999999999988752            334799999999999999999998   57889999999999999


Q ss_pred             HHHHHHHhhhcCCCcEEEEEeccCCccccccCHHHHHHHHHHcC-----CEEEEecccccccccccchhhhhcCCCCccE
Q psy14299         83 LEQTIQTSLAEKKIPLFVNATAGTTVLGAFDPLDEIATVCEKYD-----LWMHVDACWGGSLIFSEKYSFVLKGINRANS  157 (448)
Q Consensus        83 Le~~l~~~~~~~~~~~lVv~~~~~t~tG~~~~l~~I~~ia~~~g-----~~l~VD~A~~~~~~~~~~~~~~~~~~~~aD~  157 (448)
                      |+++|+++   ..+|.+|++++++|++|.++|+++|+++|++||     +|+|||+|++++..++......++....+|+
T Consensus       151 L~~~i~~~---~~~~~lvv~tagtt~tG~idpi~eI~~i~~~~g~~~~~~~lHvDaA~gg~~~p~~~~~~~~~~~~~vDS  227 (374)
T PLN03032        151 LERALAKN---RDKPAILNVNIGTTVKGAVDDLDRILRILKELGYTEDRFYIHCDGALFGLMMPFVSRAPEVTFRKPIGS  227 (374)
T ss_pred             HHHHHHHc---CCCCEEEEEEecCcCCccCCCHHHHHHHHHHhCCCCCCeeEEEEccchhhhhhccCCCcccCCCcCCcE
Confidence            99999863   235889999999999999999999999999996     5999999999998865332222233346999


Q ss_pred             EEECCccccCCCCceEEEEEeccchhhhhccCCcccccccCcccccccCCCCCcccCCCC-chhHHHHHHHHHhChHHHH
Q psy14299        158 VSWNPHKMLGAPLQCSILLIKEKGLLHQANATAATYLFQQDKFYDVSFDTGDKSVQCGRK-VDAFKLWLMWKARGNLGFR  236 (448)
Q Consensus       158 ~~~s~hK~l~~P~g~G~l~vr~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~g~~g~~  236 (448)
                      +++|+||++++|.|+|++++|++. +. .+...++|+...           +++++++|+ +.++++|+.++.+|.+|++
T Consensus       228 is~s~HK~~g~P~g~G~ll~r~~~-~~-~~~~~~~Yl~~~-----------d~ti~gSR~g~~~l~~w~~l~~~G~~g~~  294 (374)
T PLN03032        228 VSVSGHKFLGCPMPCGVALTRKKH-VK-ALSQNVEYLNSR-----------DATIMGSRNGHAPLYLWYTLRRKGYRGIK  294 (374)
T ss_pred             EEECcccccCCCcCeEEEEEEchh-hH-hhccCCcccCCC-----------CCcccCCCchHHHHHHHHHHHHhCHHHHH
Confidence            999999999999999999998753 33 334567787542           346788887 5678899888888888888


Q ss_pred             HHHHHhhhhccCCCccchhhhhhhhhhhhhhhhhhhhhhhccccccccccCCCCCccccccchhhHHHHHHHHHhcCccH
Q psy14299        237 HFVDNAVDCSRGSMTFSTLLCFDLQGLLHQANATAATYLFQQDKFYDVSFDTGDKSVQCGRKVDAFKLWLMWKARGNLGF  316 (448)
Q Consensus       237 ~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~  316 (448)
                      +.+++                                                                           
T Consensus       295 ~~~~~---------------------------------------------------------------------------  299 (374)
T PLN03032        295 RDVQH---------------------------------------------------------------------------  299 (374)
T ss_pred             HHHHH---------------------------------------------------------------------------
Confidence            75554                                                                           


Q ss_pred             HHHHHHHHHHHHHHHHHhhcCCCeEEeccCCceeeEEEEeeccCCCccccchhhhhhhhhhhHHHHHHHHhCCcEEEEee
Q psy14299        317 RHFVDNAVDCSRYFLSQISQRPGFRLVIPEFQCTNICFWFIPVSLRDKVEDETWWSTLSKVAPRIKEKLVLGGTLMIGYQ  396 (448)
Q Consensus       317 ~~~~~~~~~l~~~~~~~L~~~pg~~l~~~~~~~~~v~f~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~L~~~g~~~~~~~  396 (448)
                            ..++++++.+.|++. +++++ ..|..++|+|+...   .                    +.+. +|+.. ...
T Consensus       300 ------~~~~a~~l~~~l~~~-~~~~~-~~p~~~~V~f~~~~---~--------------------~~~~-~~w~l-~~~  346 (374)
T PLN03032        300 ------CMRNAHYLKDRLTEA-GLTCR-LNELSSTVVFERPM---D--------------------EAFI-KKWQL-ACE  346 (374)
T ss_pred             ------HHHHHHHHHHHHHhC-CCcEE-ECCCceEEEEcCCC---c--------------------HhHh-heeee-ccc
Confidence                  555699999999997 88887 77888888885321   0                    1122 45332 221


Q ss_pred             ecCCcccccEEEEEecCCCCCCHHHHHHHHHHHHHH
Q psy14299        397 PLQHRNLHNFFRLVTTCHPASSRQDMDYAIDQIELR  432 (448)
Q Consensus       397 ~~~g~~~~~~lRis~~~~~~~t~edid~l~~al~~~  432 (448)
                         .    ..+|+++|  +.++++.+|.|++.|++.
T Consensus       347 ---~----~~~hi~vm--~~~~~~~id~fi~dl~~~  373 (374)
T PLN03032        347 ---G----DIAHVVVM--PNVTVEKLDEFVEELVEV  373 (374)
T ss_pred             ---C----CEEEEEEC--CCCCHHHHHHHHHHHhcc
Confidence               1    47999996  678899999999998763

>COG0076 GadB Glutamate decarboxylase and related PLP-dependent proteins [Amino acid transport and metabolism]

Probab=100.00  E-value=4.7e-38  Score=323.39  Aligned_cols=328  Identities=23%  Similarity=0.345  Sum_probs=234.0

Q ss_pred             CccEEEeCcHHHHHHHHHHHHHHhcCCcccc-cCCCCCCCeEEEecCCCchHHHHHHHHhCCCCCcEEEEecCC-CCCcC
Q psy14299          2 NLKPFLLPGGSISNMYSICLARYRLDPDTKR-KGLSHLPPLCMFTSEDSHYSMLKAAHWLGIGMDNVIRVKTNE-RGQMI   79 (448)
Q Consensus         2 ~~~g~~t~ggT~an~~al~~a~~~~~~~~~~-~G~~~~~~~~Vl~~~~~H~s~~~~~~~~g~~~~~v~~v~~~~-~g~id   79 (448)
                      .+.|+||+|||+||++|+.++|+++.+...+ .+.. .....||+|..+|+|+.|+++++|++   ++.++.++ +.+||
T Consensus       119 ~~~G~~t~GgTean~lal~aar~~~~~~~~~~~~~~-~~~P~ii~s~~aH~s~~Kaa~~lG~~---~~~v~~~~~~~~id  194 (460)
T COG0076         119 EASGTFTSGGTEANLLALLAARERWRKRALAESGKP-GGKPNIVCSETAHFSFEKAARYLGLG---LRRVPTVPTDYRID  194 (460)
T ss_pred             CCceEEEcChHHHHHHHHHHHHHHHHHHhhhccccc-CCCCeEEecCcchhHHHHHHHHhCCC---ceeEEeccCccccC
Confidence            4689999999999999999999987533222 2222 22337999999999999999999995   55566555 89999


Q ss_pred             HHHHHHHHHHhhhcCCCcEEEEEeccCCccccccCHHHHHHHHHHcCCEEEEecccccccccccchhhh-hcCCCCccEE
Q psy14299         80 CSFLEQTIQTSLAEKKIPLFVNATAGTTVLGAFDPLDEIATVCEKYDLWMHVDACWGGSLIFSEKYSFV-LKGINRANSV  158 (448)
Q Consensus        80 ~e~Le~~l~~~~~~~~~~~lVv~~~~~t~tG~~~~l~~I~~ia~~~g~~l~VD~A~~~~~~~~~~~~~~-~~~~~~aD~~  158 (448)
                      +++|+++++++...+    .|+.+.++|.+|.+|||++|+++|+++++|+|||+|+|+..+++...... ..+++.|||+
T Consensus       195 ~~~l~~~i~~~t~~g----~vV~~aGtT~~G~iDdi~~ia~ia~~~~i~lHVDAA~GG~~~pf~~~~~~~~f~l~~vdSI  270 (460)
T COG0076         195 VDALEEAIDENTIGG----VVVGTAGTTDTGSIDDIEELADIAEEYGIWLHVDAAFGGFLLPFLEPDGRWDFGLEGVDSI  270 (460)
T ss_pred             HHHHHHHHHhhccCc----eEEEEecCCCCCccCCHHHHHHHHHHcCCcEEEEccccceeecccCccchhhcCCCCceEE
Confidence            999999999853322    59999999999999999999999999999999999999999977766666 5788899999


Q ss_pred             EECCccccCCCCceEEEEEeccchhhhhccCCcccccccCcccccccCCCCCcccCCCCc-hhHHHHHHHHHhChHHHHH
Q psy14299        159 SWNPHKMLGAPLQCSILLIKEKGLLHQANATAATYLFQQDKFYDVSFDTGDKSVQCGRKV-DAFKLWLMWKARGNLGFRH  237 (448)
Q Consensus       159 ~~s~hK~l~~P~g~G~l~vr~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~g~~g~~~  237 (448)
                      ++|+|||+++|+|||++++|+++.+........+|+...        ....+++.++|.. .+++.|+.++.+|.+|+++
T Consensus       271 t~d~HK~g~aP~~~G~il~rd~e~l~~~~~~~~~yl~~~--------~~~~~ti~~sr~~~~~~~~~~~l~~lG~eGy~~  342 (460)
T COG0076         271 TVDGHKYGLAPIGCGVVLFRDEEALRRILIFADYYLPGG--------GIPNFTILGSRPGRQALALYANLRRLGREGYRK  342 (460)
T ss_pred             EECcccccCCCCCceEEEEECHHHhhhhhhcccccCCCC--------CcCceeEeeccchHHHHHHHHHHHHhCHhHHHH
Confidence            999999999999999999999865666554455555432        1334455556554 4455555555555555554


Q ss_pred             HHHHhhhhccCCCccchhhhhhhhhhhhhhhhhhhhhhhccccccccccCCCCCccccccchhhHHHHHHHHHhcCccHH
Q psy14299        238 FVDNAVDCSRGSMTFSTLLCFDLQGLLHQANATAATYLFQQDKFYDVSFDTGDKSVQCGRKVDAFKLWLMWKARGNLGFR  317 (448)
Q Consensus       238 ~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~  317 (448)
                                                                                                      
T Consensus       343 --------------------------------------------------------------------------------  342 (460)
T COG0076         343 --------------------------------------------------------------------------------  342 (460)
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             HHHHHHHHHHHHHHHHhhcCCCeEEeccCCceeeEEEEeeccCCCccccchhhhhhhhhhhHHHHHHHHhCCcEEEEeee
Q psy14299        318 HFVDNAVDCSRYFLSQISQRPGFRLVIPEFQCTNICFWFIPVSLRDKVEDETWWSTLSKVAPRIKEKLVLGGTLMIGYQP  397 (448)
Q Consensus       318 ~~~~~~~~l~~~~~~~L~~~pg~~l~~~~~~~~~v~f~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~L~~~g~~~~~~~~  397 (448)
                       +.++..++++++.+.|.+.+.|+++ .+|..++++|++.+ ..+   ...+..+.++..+..+...+..+|..++....
T Consensus       343 -l~~~~~~~a~~la~~l~~~~~~e~~-~~p~l~~V~fr~~~-~~~---~~~~~~~~~~~~gw~v~~~~~~~~~~~v~~~~  416 (460)
T COG0076         343 -LLDRTLELARYLAEELEKLGDFELV-NEPELPIVAFRLKD-DED---TLADLSERLDRRGWQVPAQLLPKGLAIVFGTH  416 (460)
T ss_pred             -HHHHHHHHHHHHHHHHHhCCCcEee-cCCccceEEEEcCC-ccc---chhchHHHHHhcCceeecccCCccceeeeeeE
Confidence             6666777899999999999779999 88999999999833 211   01111122222333344444444433333333


Q ss_pred             cCCcccccEEEEEecCCCCCCHHHHHHHHHHHHHHHHHh
Q psy14299        398 LQHRNLHNFFRLVTTCHPASSRQDMDYAIDQIELRGAEV  436 (448)
Q Consensus       398 ~~g~~~~~~lRis~~~~~~~t~edid~l~~al~~~~~~~  436 (448)
                      ..+.   ..+++... +..++.++ +.+...+....++.
T Consensus       417 ~~~~---~~~~~~~~-~~~~~~~~-~~~~~~~~~~~~~~  450 (460)
T COG0076         417 VTGR---QGLKFIVA-NLLITDRE-ESLLALIEEPGREI  450 (460)
T ss_pred             Eeee---eeehhhcc-hhhhhhhh-HHHHHHhhhhhhhh
Confidence            3333   45666665 55555555 55555555544443

>PRK02769 histidine decarboxylase; Provisional

Probab=100.00  E-value=2e-36  Score=306.40  Aligned_cols=284  Identities=24%  Similarity=0.388  Sum_probs=219.8

Q ss_pred             ccEEEeCcHHHHHHHHHHHHHHhcCCcccccCCCCCCCeEEEecCCCchHHHHHHHHhCCCCCcEEEEecCCCCCcCHHH
Q psy14299          3 LKPFLLPGGSISNMYSICLARYRLDPDTKRKGLSHLPPLCMFTSEDSHYSMLKAAHWLGIGMDNVIRVKTNERGQMICSF   82 (448)
Q Consensus         3 ~~g~~t~ggT~an~~al~~a~~~~~~~~~~~G~~~~~~~~Vl~~~~~H~s~~~~~~~~g~~~~~v~~v~~~~~g~id~e~   82 (448)
                      .+|+||+||||+|++|+.++|+.            .++..|++++.+|+|+.++++.+|+   ..+.|+.+++|++|+++
T Consensus        85 ~~G~~TsGgTean~~a~~~ar~~------------~~~~~ii~s~~~H~Sv~ka~~~lg~---~~~~V~~~~~g~id~~~  149 (380)
T PRK02769         85 SWGYITNGGTEGNLYGCYLAREL------------FPDGTLYYSKDTHYSVSKIARLLRI---KSRVITSLPNGEIDYDD  149 (380)
T ss_pred             CCEEEecChHHHHHHHHHHHHHh------------CCCcEEEeCCCceehHHHHHHHcCC---CCceeccCCCCcCcHHH
Confidence            36899999999999999998875            2556899999999999999999998   56678888899999999


Q ss_pred             HHHHHHHhhhcCCCcEEEEEeccCCccccccCHHHHHHHHHHcC---CEEEEecccccccccccchhhhhcCCCCccEEE
Q psy14299         83 LEQTIQTSLAEKKIPLFVNATAGTTVLGAFDPLDEIATVCEKYD---LWMHVDACWGGSLIFSEKYSFVLKGINRANSVS  159 (448)
Q Consensus        83 Le~~l~~~~~~~~~~~lVv~~~~~t~tG~~~~l~~I~~ia~~~g---~~l~VD~A~~~~~~~~~~~~~~~~~~~~aD~~~  159 (448)
                      |+++|+++   +.+|.+|++++++|++|.++|+++|+++|++||   +|+|||+||+++.++.......++....+|+++
T Consensus       150 L~~~i~~~---~~~t~lvv~t~gtt~tG~idpi~~I~~i~~~~g~~~~~lHVDaA~gg~~~p~~~~~~~~d~~~~vDsis  226 (380)
T PRK02769        150 LISKIKEN---KNQPPIIFANIGTTMTGAIDNIKEIQEILKKIGIDDYYIHADAALSGMILPFVNNPPPFSFADGIDSIA  226 (380)
T ss_pred             HHHHHHhC---CCCcEEEEEEeCCCCCcccCCHHHHHHHHHHhCCCceEEEEEecccceeecccCccccCCccCCCCEEE
Confidence            99999874   456899999999999999999999999999998   699999999999886543322333333699999


Q ss_pred             ECCccccCCCCceEEEEEeccchhhhhccCCcccccccCcccccccCCCCCcccCCCCc-hhHHHHHHHHHhChHHHHHH
Q psy14299        160 WNPHKMLGAPLQCSILLIKEKGLLHQANATAATYLFQQDKFYDVSFDTGDKSVQCGRKV-DAFKLWLMWKARGNLGFRHF  238 (448)
Q Consensus       160 ~s~hK~l~~P~g~G~l~vr~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~g~~g~~~~  238 (448)
                      +|+|||+++|.|+|++++|++. +... .....|+...           ++++.++|+. .++.+|++++.+        
T Consensus       227 ~s~HK~~~~P~g~G~l~~r~~~-~~~~-~~~~~yl~~~-----------d~t~~GSR~g~~~l~lw~aL~~l--------  285 (380)
T PRK02769        227 ISGHKFIGSPMPCGIVLAKKKY-VERI-SVDVDYIGSR-----------DQTISGSRNGHTALLLWAAIRSL--------  285 (380)
T ss_pred             ECCcccCCCCCCcEEEEEehhh-hhhc-ccCccccCCC-----------CCCccCCCCcHHHHHHHHHHHHH--------
Confidence            9999999999999999999753 3332 2345555321           2345666653 344555555554        


Q ss_pred             HHHhhhhccCCCccchhhhhhhhhhhhhhhhhhhhhhhccccccccccCCCCCccccccchhhHHHHHHHHHhcCccHHH
Q psy14299        239 VDNAVDCSRGSMTFSTLLCFDLQGLLHQANATAATYLFQQDKFYDVSFDTGDKSVQCGRKVDAFKLWLMWKARGNLGFRH  318 (448)
Q Consensus       239 i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~  318 (448)
                                                                                               +.+|+++
T Consensus       286 -------------------------------------------------------------------------g~~G~~~  292 (380)
T PRK02769        286 -------------------------------------------------------------------------GSKGLRQ  292 (380)
T ss_pred             -------------------------------------------------------------------------CHHHHHH
Confidence                                                                                     5555555


Q ss_pred             HHHHHHHHHHHHHHHhhcCCCeEEeccCCceeeEEEEeeccCCCccccchhhhhhhhhhhHHHHHHHHhCCcEEEEeeec
Q psy14299        319 FVDNAVDCSRYFLSQISQRPGFRLVIPEFQCTNICFWFIPVSLRDKVEDETWWSTLSKVAPRIKEKLVLGGTLMIGYQPL  398 (448)
Q Consensus       319 ~~~~~~~l~~~~~~~L~~~pg~~l~~~~~~~~~v~f~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~L~~~g~~~~~~~~~  398 (448)
                      +.++..++++++.++|++. |++++ .+|.+++|+|....                    .++    . +|+. +...  
T Consensus       293 ~~~~~~~la~~l~~~L~~~-g~~~~-~~p~~~~v~f~~~~--------------------~~~----~-~~w~-l~~~--  342 (380)
T PRK02769        293 RVQHCLDMAQYAVDRLQAN-GIPAW-RNPNSITVVFPCPS--------------------ERI----W-KKWH-LATS--  342 (380)
T ss_pred             HHHHHHHHHHHHHHHHHhC-CCEEE-cCCCceEEEEcCCC--------------------HHH----H-hCee-Eccc--
Confidence            7777888899999999986 99998 88899999995321                    022    1 4533 2221  


Q ss_pred             CCcccccEEEEEecCCCCCCHHHHHHHHHHHHHHHHH
Q psy14299        399 QHRNLHNFFRLVTTCHPASSRQDMDYAIDQIELRGAE  435 (448)
Q Consensus       399 ~g~~~~~~lRis~~~~~~~t~edid~l~~al~~~~~~  435 (448)
                       +    .++|+++|  +.+|+|.||.+++.|.+..+.
T Consensus       343 -~----~~~hi~~~--~~~~~~~~~~f~~dl~~~~~~  372 (380)
T PRK02769        343 -G----NQAHIITM--PHHNKQQIDSLIDELIFDLKN  372 (380)
T ss_pred             -C----CEEEEEEC--CCCCHHHHHHHHHHHHHHHhc
Confidence             1    47999996  788999999999999987763

>COG0520 csdA Selenocysteine lyase/Cysteine desulfurase [Posttranslational modification, protein turnover, chaperones]

Probab=100.00  E-value=9.9e-36  Score=302.81  Aligned_cols=305  Identities=17%  Similarity=0.165  Sum_probs=229.2

Q ss_pred             cEEEeCcHHHHHHHHHHHHHHhcCCcccccCCCCCCCeEEEecCCCchHHHHHHHHh----CCCCCcEEEEecCCCCCcC
Q psy14299          4 KPFLLPGGSISNMYSICLARYRLDPDTKRKGLSHLPPLCMFTSEDSHYSMLKAAHWL----GIGMDNVIRVKTNERGQMI   79 (448)
Q Consensus         4 ~g~~t~ggT~an~~al~~a~~~~~~~~~~~G~~~~~~~~Vl~~~~~H~s~~~~~~~~----g~~~~~v~~v~~~~~g~id   79 (448)
                      ..+||+|.|+++...........           .+++.|++++.+|+|+.-.++.+    |+   +++.+|.+++|.++
T Consensus        86 eIvft~~tT~aln~va~~l~~~~-----------~~gdeIv~s~~EH~sn~~pw~~~~~~~Ga---~v~~i~~~~~g~~~  151 (405)
T COG0520          86 EIVFTRGTTEALNLVARGLGRSL-----------KPGDEIVVSDLEHHSNIVPWQELAKRTGA---KVRVIPLDDDGLLD  151 (405)
T ss_pred             eEEEeCChhHHHHHHHHHhhhhh-----------cCCCEEEEccCcchhhHHHHHHHHHhcCc---EEEEEecCCCCCcC
Confidence            58999999999655544332111           26688999999999977666543    55   79999999999999


Q ss_pred             HHHHHHHHHHhhhcCCCcEEEEEeccCCccccccCHHHHHHHHHHcCCEEEEecccccccccccchhhhhcCCCCccEEE
Q psy14299         80 CSFLEQTIQTSLAEKKIPLFVNATAGTTVLGAFDPLDEIATVCEKYDLWMHVDACWGGSLIFSEKYSFVLKGINRANSVS  159 (448)
Q Consensus        80 ~e~Le~~l~~~~~~~~~~~lVv~~~~~t~tG~~~~l~~I~~ia~~~g~~l~VD~A~~~~~~~~~~~~~~~~~~~~aD~~~  159 (448)
                      ++++++.+.+      +|++|++++.+|.+|.+.|+++|+++||++|++++||+||++++.++|..     .+ ++|+++
T Consensus       152 ~~~~~~~i~~------~Tklvais~vSn~tG~~~pv~~I~~la~~~ga~v~VDaaq~~~h~~idv~-----~l-~~Df~a  219 (405)
T COG0520         152 LDALEKLITP------KTKLVALSHVSNVTGTVNPVKEIAELAHEHGALVLVDAAQAAGHLPIDVQ-----EL-GCDFLA  219 (405)
T ss_pred             HHHHHHhcCC------CceEEEEECccccccccchHHHHHHHHHHcCCEEEEECccccCccCCCch-----hc-CCCEEE
Confidence            9999997755      69999999999999999999999999999999999999999999987752     22 589999


Q ss_pred             ECCccccCCCCceEEEEEeccchhhhhccCCcccccccCcccccccCCCCCcccCCCCchhHHHHHHHHHhChHHHHHHH
Q psy14299        160 WNPHKMLGAPLQCSILLIKEKGLLHQANATAATYLFQQDKFYDVSFDTGDKSVQCGRKVDAFKLWLMWKARGNLGFRHFV  239 (448)
Q Consensus       160 ~s~hK~l~~P~g~G~l~vr~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~g~~~~i  239 (448)
                      +|+|||+++|.|+|+||+|++. +...    .+++...........+. ..                             
T Consensus       220 fsgHKwl~gP~GiGvLy~r~~~-l~~l----~P~~~gg~~~~~~~~~~-~~-----------------------------  264 (405)
T COG0520         220 FSGHKWLLGPTGIGVLYVRKEL-LEEL----EPFLGGGGMIEYVSRDE-GV-----------------------------  264 (405)
T ss_pred             EcccccccCCCceEEEEEchHH-Hhhc----CCcccCCCceeeecccc-cc-----------------------------
Confidence            9999999999999999998863 4332    22222211110000000 00                             


Q ss_pred             HHhhhhccCCCccchhhhhhhhhhhhhhhhhhhhhhhccccccccccCCCCCcccccc--chhhHHHHHHHHHhcCccHH
Q psy14299        240 DNAVDCSRGSMTFSTLLCFDLQGLLHQANATAATYLFQQDKFYDVSFDTGDKSVQCGR--KVDAFKLWLMWKARGNLGFR  317 (448)
Q Consensus       240 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~G~~  317 (448)
                                                                   .+.-...+|+++.  +...+++..+++++.++|++
T Consensus       265 ---------------------------------------------~~~~~p~rfe~gTpn~~~~i~l~aAl~~~~~ig~~  299 (405)
T COG0520         265 ---------------------------------------------TLAELPLRFEAGTPNIAGAIGLAAALDYLLEIGME  299 (405)
T ss_pred             ---------------------------------------------cccCcchhhccCCchHHHHHhHHHHHHHHHHHhHH
Confidence                                                         0001112233333  56688888999999999999


Q ss_pred             HHHHHHHHHHHHHHHHhhcCCCeEEeccC--CceeeEEEEeeccCCCccccchhhhhhhhhhhHHHHHHHHhCCcEEEEe
Q psy14299        318 HFVDNAVDCSRYFLSQISQRPGFRLVIPE--FQCTNICFWFIPVSLRDKVEDETWWSTLSKVAPRIKEKLVLGGTLMIGY  395 (448)
Q Consensus       318 ~~~~~~~~l~~~~~~~L~~~pg~~l~~~~--~~~~~v~f~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~L~~~g~~~~~~  395 (448)
                      ++.++...|++++.+.|+++|++++++++  .+.++++|.+...+                 ..++...|.++| +.+..
T Consensus       300 ~i~~~e~~L~~~~~~~L~~~~~v~i~g~~~~~r~~~vsF~v~~~~-----------------~~dv~~~L~~~g-I~vr~  361 (405)
T COG0520         300 AIEAHERELTEYLLEGLSELPGVEIYGPPDADRGGIVSFNVKGIH-----------------PHDVATLLDEKG-IAVRA  361 (405)
T ss_pred             HHHHHHHHHHHHHHHHHhcCCCeEEecCCcccCceEEEEEeCCCC-----------------HHHHHHHHHhCC-eEEEe
Confidence            99999999999999999999999999433  36899999764321                 237889999999 55543


Q ss_pred             eecCCc------ccccEEEEEecCCCCCCHHHHHHHHHHHHHHHH
Q psy14299        396 QPLQHR------NLHNFFRLVTTCHPASSRQDMDYAIDQIELRGA  434 (448)
Q Consensus       396 ~~~~g~------~~~~~lRis~~~~~~~t~edid~l~~al~~~~~  434 (448)
                      +.....      +....+|+|+  ++|||+||||+|+++|+++.+
T Consensus       362 g~~ca~p~~~~~~~~~~iR~S~--~~YNt~edid~l~~aL~~~~~  404 (405)
T COG0520         362 GHHCAQPLHRLLGVDATIRASL--HLYNTEEDVDRLLEALKKALA  404 (405)
T ss_pred             ccccccHHHHhcCCCCceEEEE--eecCCHHHHHHHHHHHHHHhh
Confidence            322111      1124599999  899999999999999998764

>cd06450 DOPA_deC_like DOPA decarboxylase family

Probab=100.00  E-value=1.4e-34  Score=290.14  Aligned_cols=287  Identities=36%  Similarity=0.547  Sum_probs=223.9

Q ss_pred             ccEEEeCcHHHHHHHHHHHHHHhcCCcccccCCCCCCCeEEEecCCCchHHHHHHHHhCCCCCcEEEEecCCCCCcCHHH
Q psy14299          3 LKPFLLPGGSISNMYSICLARYRLDPDTKRKGLSHLPPLCMFTSEDSHYSMLKAAHWLGIGMDNVIRVKTNERGQMICSF   82 (448)
Q Consensus         3 ~~g~~t~ggT~an~~al~~a~~~~~~~~~~~G~~~~~~~~Vl~~~~~H~s~~~~~~~~g~~~~~v~~v~~~~~g~id~e~   82 (448)
                      ..++||+|||+||++++.+++.+..++.+..|....++.+|++++.+|+++.++++..|.   +++.+|.++++.+|+++
T Consensus        58 ~~~~~t~ggt~a~~~al~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~h~~~~~~~~~~g~---~~~~v~~~~~~~~d~~~  134 (345)
T cd06450          58 ADGVFTSGGSESNLLALLAARDRARKRLKAGGGRGIDKLVIVCSDQAHVSVEKAAAYLDV---KVRLVPVDEDGRMDPEA  134 (345)
T ss_pred             CCEEEeCChhHHHHHHHHHHHHHhhhhhhcccccccCCeEEEEcCcchhHHHHHHHHHhc---CeEEeeeCCCCCcCHHH
Confidence            469999999999999999987754333222222212456899999999999999998888   78999998888999999


Q ss_pred             HHHHHHHhhhcCCCcEEEEEeccCCccccccCHHHHHHHHHHcCCEEEEecccccccccccchhhhhcCCCCccEEEECC
Q psy14299         83 LEQTIQTSLAEKKIPLFVNATAGTTVLGAFDPLDEIATVCEKYDLWMHVDACWGGSLIFSEKYSFVLKGINRANSVSWNP  162 (448)
Q Consensus        83 Le~~l~~~~~~~~~~~lVv~~~~~t~tG~~~~l~~I~~ia~~~g~~l~VD~A~~~~~~~~~~~~~~~~~~~~aD~~~~s~  162 (448)
                      |++++.+...++.++++|++++++|++|.++|+++|+++|++||+|+|+|+||+.+..+.+........+..+|++++++
T Consensus       135 l~~~i~~~~~~~~~~~~v~~~~~~~~tG~~~~~~~i~~~~~~~~~~l~vD~a~~~~~~~~~~~~~~~~~~~~~d~~~~s~  214 (345)
T cd06450         135 LEAAIDEDKAEGLNPIMVVATAGTTDTGAIDPLEEIADLAEKYDLWLHVDAAYGGFLLPFPEPRHLDFGIERVDSISVDP  214 (345)
T ss_pred             HHHHHHHHHHCCCCcEEEEEecccCCCCCCCCHHHHHHHHHHhCCeEEEechhhHHHhhChhhHHHhcCccccCEEEEch
Confidence            99999876666667889999999999999999999999999999999999999998876544333233445689999999


Q ss_pred             ccccCCCCceEEEEEeccchhhhhccCCcccccccCcccccccCCCCCcccCCCCchhHHHHHHHHHhChHHHHHHHHHh
Q psy14299        163 HKMLGAPLQCSILLIKEKGLLHQANATAATYLFQQDKFYDVSFDTGDKSVQCGRKVDAFKLWLMWKARGNLGFRHFVDNA  242 (448)
Q Consensus       163 hK~l~~P~g~G~l~vr~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~g~~~~i~~~  242 (448)
                      |||+++|.|+|+++++                                         .+.+|.+                
T Consensus       215 ~K~l~~p~g~g~~~~~-----------------------------------------~~~~~~~----------------  237 (345)
T cd06450         215 HKYGLVPLGCSAVLVR-----------------------------------------ALKLWAT----------------  237 (345)
T ss_pred             hHhhCCCcchHHHHHH-----------------------------------------HHHHHHH----------------
Confidence            9999999999987765                                         1122333                


Q ss_pred             hhhccCCCccchhhhhhhhhhhhhhhhhhhhhhhccccccccccCCCCCccccccchhhHHHHHHHHHhcCccHHHHHHH
Q psy14299        243 VDCSRGSMTFSTLLCFDLQGLLHQANATAATYLFQQDKFYDVSFDTGDKSVQCGRKVDAFKLWLMWKARGNLGFRHFVDN  322 (448)
Q Consensus       243 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~  322 (448)
                                                                                       +++++.+|++++.++
T Consensus       238 -----------------------------------------------------------------l~~l~~~g~~~~~~~  252 (345)
T cd06450         238 -----------------------------------------------------------------LRRFGRDGYGEHIDR  252 (345)
T ss_pred             -----------------------------------------------------------------HHHHhHHHHHHHHHH
Confidence                                                                             333444566677788


Q ss_pred             HHHHHHHHHHHhhcCCCeEEeccCCceeeEEEEeeccCCCccccchhhhhhhhhhhHHHHHHHHhCCcEEEEeeecCCcc
Q psy14299        323 AVDCSRYFLSQISQRPGFRLVIPEFQCTNICFWFIPVSLRDKVEDETWWSTLSKVAPRIKEKLVLGGTLMIGYQPLQHRN  402 (448)
Q Consensus       323 ~~~l~~~~~~~L~~~pg~~l~~~~~~~~~v~f~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~L~~~g~~~~~~~~~~g~~  402 (448)
                      ..++++++.+.|+++|+++++ .++..++++|++.+..            ..+....++.++|.++|.+++.+....+. 
T Consensus       253 ~~~~~~~l~~~L~~~~~~~~~-~~~~~~iv~f~~~~~~------------~~~~~~~~i~~~L~~~g~~~~~~~~~~~~-  318 (345)
T cd06450         253 IVDLAKYLAELIRADPGFELL-GEPNLSLVCFRLKPSV------------KLDELNYDLSDRLNERGGWHVPATTLGGP-  318 (345)
T ss_pred             HHHHHHHHHHHHhcCCCeEEe-cCCceeEEEEEECCcc------------hhhHHHHHHHHHHHhcCCEEEEeeEECCe-
Confidence            888999999999999999988 7778899999764310            00112347889999997676665544333 


Q ss_pred             cccEEEEEecCCCCCCHHHHHHHHHHHHH
Q psy14299        403 LHNFFRLVTTCHPASSRQDMDYAIDQIEL  431 (448)
Q Consensus       403 ~~~~lRis~~~~~~~t~edid~l~~al~~  431 (448)
                        .++|++++ +++||++|+|+++++|++
T Consensus       319 --~~lRis~~-~~~~t~~di~~l~~~l~~  344 (345)
T cd06450         319 --NVLRFVVT-NPLTTRDDADALLEDIER  344 (345)
T ss_pred             --EEEEEEec-CCCCCHHHHHHHHHHHHh
Confidence              79999996 455799999999999976

This family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). The major groups in this CD correspond to DOPA/tyrosine decarboxylase (DDC), histidine decarboxylase (HDC), and glutamate decarboxylase (GDC). DDC is active as a dimer and catalyzes the decarboxylation of tyrosine. GDC catalyzes the decarboxylation of glutamate and HDC catalyzes the decarboxylation of histidine.

>COG1104 NifS Cysteine sulfinate desulfinase/cysteine desulfurase and related enzymes [Amino acid transport and metabolism]

Probab=100.00  E-value=8.1e-31  Score=258.65  Aligned_cols=297  Identities=17%  Similarity=0.203  Sum_probs=215.1

Q ss_pred             cEEEeCcHHHHHHHHHHHHHHhcCCcccccCCCCCCCeEEEecCCCchHHHHHHHHh---CCCCCcEEEEecCCCCCcCH
Q psy14299          4 KPFLLPGGSISNMYSICLARYRLDPDTKRKGLSHLPPLCMFTSEDSHYSMLKAAHWL---GIGMDNVIRVKTNERGQMIC   80 (448)
Q Consensus         4 ~g~~t~ggT~an~~al~~a~~~~~~~~~~~G~~~~~~~~Vl~~~~~H~s~~~~~~~~---g~~~~~v~~v~~~~~g~id~   80 (448)
                      ..+||+||||+|.+++..+...+.   ++     ..+..|+++..+|+++.+.|+++   |.   .|.++|++.+|.+|+
T Consensus        63 eIiFTSG~TEsnNlaI~g~~~a~~---~~-----~~~~HIIts~iEH~aVl~~~~~Le~~g~---~Vtyl~V~~~G~v~~  131 (386)
T COG1104          63 EIIFTSGATESNNLAIKGAALAYR---NA-----QKGKHIITSAIEHPAVLNTCRYLERQGF---EVTYLPVDSNGLVDL  131 (386)
T ss_pred             eEEEecCCcHHHHHHHHhhHHhhh---cc-----cCCCeEEEcccccHHHHHHHHHHHhcCC---eEEEeCCCCCCeEcH
Confidence            579999999999999876433211   00     13457999999999999999988   66   799999999999999


Q ss_pred             HHHHHHHHHhhhcCCCcEEEEEeccCCccccccCHHHHHHHHHHcCCEEEEecccccccccccchhhhhcCCCCccEEEE
Q psy14299         81 SFLEQTIQTSLAEKKIPLFVNATAGTTVLGAFDPLDEIATVCEKYDLWMHVDACWGGSLIFSEKYSFVLKGINRANSVSW  160 (448)
Q Consensus        81 e~Le~~l~~~~~~~~~~~lVv~~~~~t~tG~~~~l~~I~~ia~~~g~~l~VD~A~~~~~~~~~~~~~~~~~~~~aD~~~~  160 (448)
                      ++|+++|++      ++.+|++.+.+|.+|+++||++|+++||++|+++|||++|+.|..+++...     + .+|++++
T Consensus       132 e~L~~al~~------~T~LVSim~aNnE~G~IQpI~ei~~i~k~~~i~fHvDAvQa~Gkipi~~~~-----~-~vD~ls~  199 (386)
T COG1104         132 EQLEEALRP------DTILVSIMHANNETGTIQPIAEIGEICKERGILFHVDAVQAVGKIPIDLEE-----L-GVDLLSF  199 (386)
T ss_pred             HHHHHhcCC------CceEEEEEecccCeeecccHHHHHHHHHHcCCeEEEehhhhcCceeccccc-----c-CcceEEe
Confidence            999999986      488999999999999999999999999999999999999999999877532     1 3899999


Q ss_pred             CCccccCCCCceEEEEEeccchhhhhccCCcccccccCcccccccCCCCCcccCCCCchhHHHHHHHHHhChHHHHHHHH
Q psy14299        161 NPHKMLGAPLQCSILLIKEKGLLHQANATAATYLFQQDKFYDVSFDTGDKSVQCGRKVDAFKLWLMWKARGNLGFRHFVD  240 (448)
Q Consensus       161 s~hK~l~~P~g~G~l~vr~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~g~~~~i~  240 (448)
                      |+||+ ++|.|+|+||+|+...+..       .+....+             +.++|.-      +.+..|.-|+..+++
T Consensus       200 SaHK~-~GpkGiGaLyv~~~~~~~p-------~i~GGgQ-------------E~g~RsG------Tenv~~Ivg~~~A~~  252 (386)
T COG1104         200 SAHKF-GGPKGIGALYVRPGVRLEP-------LIHGGGQ-------------ERGLRSG------TENVPGIVGFGKAAE  252 (386)
T ss_pred             ehhhc-cCCCceEEEEECCCCccCc-------eeccCcC-------------CCCCCCC------CccHHHHHHHHHHHH
Confidence            99996 5699999999966543322       2221111             1222210      112233444444333


Q ss_pred             HhhhhccCCCccchhhhhhhhhhhhhhhhhhhhhhhccccccccccCCCCCccccccchhhHHHHHHHHHhcCccHHHHH
Q psy14299        241 NAVDCSRGSMTFSTLLCFDLQGLLHQANATAATYLFQQDKFYDVSFDTGDKSVQCGRKVDAFKLWLMWKARGNLGFRHFV  320 (448)
Q Consensus       241 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~  320 (448)
                      -..                                                                      +.++...
T Consensus       253 ~a~----------------------------------------------------------------------~~~~~~~  262 (386)
T COG1104         253 IAV----------------------------------------------------------------------EELEEEN  262 (386)
T ss_pred             HHH----------------------------------------------------------------------HHHHHHH
Confidence            222                                                                      2355667


Q ss_pred             HHHHHHHHHHHHHhhcC-CCeEEecc-CCce-eeEEEEeeccCCCccccchhhhhhhhhhhHHHHHHHHhCCcEEEEeee
Q psy14299        321 DNAVDCSRYFLSQISQR-PGFRLVIP-EFQC-TNICFWFIPVSLRDKVEDETWWSTLSKVAPRIKEKLVLGGTLMIGYQP  397 (448)
Q Consensus       321 ~~~~~l~~~~~~~L~~~-pg~~l~~~-~~~~-~~v~f~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~L~~~g~~~~~~~~  397 (448)
                      .+...++++|.+.|.+. |++.+.+. .++. +++.|.+.  ++.+               +.+.-.|...| +.++.+.
T Consensus       263 ~~~~~lr~~l~~~l~~~~p~~~~~g~~~~rlP~~~~~~f~--gv~g---------------E~ll~~L~~~g-I~vStGS  324 (386)
T COG1104         263 ARLRKLRDRLEDGLLEIIPDVYLNGDDEPRLPNILNFSFP--GVEG---------------ESLLLALDLAG-IAVSTGS  324 (386)
T ss_pred             HHHHHHHHHHHHHHHhcCCcEEEcCCcccCCCCeEEEEeC--CCcH---------------HHHHHhccccC-eEEeccc
Confidence            78889999999999976 88888632 2333 44455543  2321               24556666677 5554321


Q ss_pred             cC--------------Cc---ccccEEEEEecCCCCCCHHHHHHHHHHHHHHHHHhHHhh
Q psy14299        398 LQ--------------HR---NLHNFFRLVTTCHPASSRQDMDYAIDQIELRGAEVDLEM  440 (448)
Q Consensus       398 ~~--------------g~---~~~~~lRis~~~~~~~t~edid~l~~al~~~~~~~~~~~  440 (448)
                      -.              |.   .-.+.+|||+  +.+||++|||+++++++++.++++..+
T Consensus       325 ACsS~~~~pShVL~AmG~~~e~a~~siR~S~--g~~tt~eei~~~~~~l~~~i~~lr~~~  382 (386)
T COG1104         325 ACSSGSLEPSHVLRAMGISEELAHGSIRFSL--GRFTTEEEIDAAAEALKEIIKRLRELS  382 (386)
T ss_pred             cccCCCCCccHHHHHcCCChHHhCccEEEEc--CCCCCHHHHHHHHHHHHHHHHHHhhhc
Confidence            10              11   1237899999  699999999999999999998876544

>PRK09295 bifunctional cysteine desulfurase/selenocysteine lyase; Validated

Probab=99.97  E-value=8.6e-29  Score=254.22  Aligned_cols=305  Identities=15%  Similarity=0.108  Sum_probs=216.2

Q ss_pred             cEEEeCcHHHHHHHHHHHHHHhcCCcccccCCCCCCCeEEEecCCCchHHH----HHHHHhCCCCCcEEEEecCCCCCcC
Q psy14299          4 KPFLLPGGSISNMYSICLARYRLDPDTKRKGLSHLPPLCMFTSEDSHYSML----KAAHWLGIGMDNVIRVKTNERGQMI   79 (448)
Q Consensus         4 ~g~~t~ggT~an~~al~~a~~~~~~~~~~~G~~~~~~~~Vl~~~~~H~s~~----~~~~~~g~~~~~v~~v~~~~~g~id   79 (448)
                      ..+||+|+|+++..++........          .+++.|++++.+|++..    ..++..|+   +++.++.++++.+|
T Consensus        87 ~v~~t~g~t~~l~~~~~~~~~~~~----------~~gd~vl~~~~~~~s~~~~~~~~~~~~g~---~v~~v~~~~~~~~d  153 (406)
T PRK09295         87 ELVFVRGTTEGINLVANSWGNSNV----------RAGDNIIISEMEHHANIVPWQMLCARVGA---ELRVIPLNPDGTLQ  153 (406)
T ss_pred             eEEEeCCHHHHHHHHHHHhhhhcC----------CCcCEEEECcchhhHHHHHHHHHHHHcCc---EEEEEecCCCCCCC
Confidence            579999999997776654321110          25678999999998753    44455677   78899998889999


Q ss_pred             HHHHHHHHHHhhhcCCCcEEEEEeccCCccccccCHHHHHHHHHHcCCEEEEecccccccccccchhhhhcCCCCccEEE
Q psy14299         80 CSFLEQTIQTSLAEKKIPLFVNATAGTTVLGAFDPLDEIATVCEKYDLWMHVDACWGGSLIFSEKYSFVLKGINRANSVS  159 (448)
Q Consensus        80 ~e~Le~~l~~~~~~~~~~~lVv~~~~~t~tG~~~~l~~I~~ia~~~g~~l~VD~A~~~~~~~~~~~~~~~~~~~~aD~~~  159 (448)
                      +++|++++++      ++++|++++++|++|.+.|+++|+++||++|++++||++|+.+..+.+..     .. .+|+++
T Consensus       154 ~~~l~~~i~~------~t~lv~l~~~~n~tG~~~~~~~i~~~~~~~~~~vivD~a~~~g~~~~~~~-----~~-~~D~~~  221 (406)
T PRK09295        154 LETLPALFDE------RTRLLAITHVSNVLGTENPLAEMIALAHQHGAKVLVDGAQAVMHHPVDVQ-----AL-DCDFYV  221 (406)
T ss_pred             HHHHHHhcCC------CcEEEEEecchhcccccCCHHHHHHHHHHcCCEEEEEcccccCccccCch-----hc-CCCEEE
Confidence            9999999854      57899999999999999999999999999999999999999887755421     11 479999


Q ss_pred             ECCccccCCCCceEEEEEeccchhhhhccCCcccccccCcccccccCCCCCcccCCCCchhHHHHHHHHHhChHHHHHHH
Q psy14299        160 WNPHKMLGAPLQCSILLIKEKGLLHQANATAATYLFQQDKFYDVSFDTGDKSVQCGRKVDAFKLWLMWKARGNLGFRHFV  239 (448)
Q Consensus       160 ~s~hK~l~~P~g~G~l~vr~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~g~~~~i  239 (448)
                      +|+|| +++|.|+|+++++++ .+...    +++............. ..+.+                           
T Consensus       222 ~s~~K-~~gp~G~G~l~~~~~-~~~~~----~~~~~g~~~~~~~~~~-~~~~~---------------------------  267 (406)
T PRK09295        222 FSGHK-LYGPTGIGILYVKEA-LLQEM----PPWEGGGSMIATVSLT-EGTTW---------------------------  267 (406)
T ss_pred             eehhh-ccCCCCcEEEEEchH-hHhhC----CCcccCCceeeeeecC-Ccccc---------------------------
Confidence            99999 556999999999765 33321    2222211100000000 00000                           


Q ss_pred             HHhhhhccCCCccchhhhhhhhhhhhhhhhhhhhhhhccccccccccCCCCCcccc--ccchhhHHHHHHHHHhcCccHH
Q psy14299        240 DNAVDCSRGSMTFSTLLCFDLQGLLHQANATAATYLFQQDKFYDVSFDTGDKSVQC--GRKVDAFKLWLMWKARGNLGFR  317 (448)
Q Consensus       240 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~G~~  317 (448)
                                                                     .-...+|+.  .+...++++..+++++.++|++
T Consensus       268 -----------------------------------------------~~~~~r~e~GT~~~~~~~~l~~al~~~~~~g~~  300 (406)
T PRK09295        268 -----------------------------------------------AKAPWRFEAGTPNTGGIIGLGAALDYVSALGLN  300 (406)
T ss_pred             -----------------------------------------------CCchhhcCCCCccHHHHHHHHHHHHHHHHhCHH
Confidence                                                           000011221  2256678888899999999999


Q ss_pred             HHHHHHHHHHHHHHHHhhcCCCeEEeccCCceeeEEEEeeccCCCccccchhhhhhhhhhhHHHHHHHHhCCcEEEEeee
Q psy14299        318 HFVDNAVDCSRYFLSQISQRPGFRLVIPEFQCTNICFWFIPVSLRDKVEDETWWSTLSKVAPRIKEKLVLGGTLMIGYQP  397 (448)
Q Consensus       318 ~~~~~~~~l~~~~~~~L~~~pg~~l~~~~~~~~~v~f~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~L~~~g~~~~~~~~  397 (448)
                      .+.++...+++++.+.|+++|+++++.+..+.++++|.+.  +..               ..++.+.|.++| +.+..+.
T Consensus       301 ~i~~~~~~l~~~l~~~l~~~~~~~~~~~~~~~~iv~~~~~--~~~---------------~~~~~~~L~~~g-I~v~~g~  362 (406)
T PRK09295        301 NIAEYEQNLMHYALSQLESVPDLTLYGPQNRLGVIAFNLG--KHH---------------AYDVGSFLDNYG-IAVRTGH  362 (406)
T ss_pred             HHHHHHHHHHHHHHHHHhcCCCEEEeCCCCCceEEEEEEC--CcC---------------HHHHHHHHHhCC-eEEeccc
Confidence            9999999999999999999999999832234678888642  111               125677787788 5444322


Q ss_pred             cCC------cccccEEEEEecCCCCCCHHHHHHHHHHHHHHHH
Q psy14299        398 LQH------RNLHNFFRLVTTCHPASSRQDMDYAIDQIELRGA  434 (448)
Q Consensus       398 ~~g------~~~~~~lRis~~~~~~~t~edid~l~~al~~~~~  434 (448)
                      ...      ...++++|+|+  |+|||++|||+|+++|+++.+
T Consensus       363 ~c~~~~~~~~~~~~~iRiS~--~~ynt~~did~l~~~l~~i~~  403 (406)
T PRK09295        363 HCAMPLMAYYNVPAMCRASL--AMYNTHEEVDRLVAGLQRIHR  403 (406)
T ss_pred             cchHHHHHHHCCCCEEEEEc--cCCCCHHHHHHHHHHHHHHHH
Confidence            110      00125899999  899999999999999998865

>PRK13520 L-tyrosine decarboxylase; Provisional

Probab=99.97  E-value=9.8e-29  Score=250.25  Aligned_cols=291  Identities=23%  Similarity=0.367  Sum_probs=216.1

Q ss_pred             cEEEeCcHHHHHHHHHHHHHHhcCCcccccCCCCCCCeEEEecCCCchHHHHHHHHhCCCCCcEEEEecCCCCCcCHHHH
Q psy14299          4 KPFLLPGGSISNMYSICLARYRLDPDTKRKGLSHLPPLCMFTSEDSHYSMLKAAHWLGIGMDNVIRVKTNERGQMICSFL   83 (448)
Q Consensus         4 ~g~~t~ggT~an~~al~~a~~~~~~~~~~~G~~~~~~~~Vl~~~~~H~s~~~~~~~~g~~~~~v~~v~~~~~g~id~e~L   83 (448)
                      .+++++|||++|..++.+++....          .+++.|++++.+|+++.+.++..|+   +++.+|.++++.+|+++|
T Consensus        78 ~~~~~~ggt~a~~~a~~~~~~~~~----------~~~~~vl~~~~~h~s~~~~~~~~g~---~~~~v~~~~~~~~d~~~l  144 (371)
T PRK13520         78 YGYITSGGTEANIQAVRAARNLAK----------AEKPNIVVPESAHFSFDKAADMLGV---ELRRAPLDDDYRVDVKAV  144 (371)
T ss_pred             CeEEecCcHHHHHHHHHHHHhhcc----------CCCceEEecCcchHHHHHHHHHcCc---eEEEecCCCCCcCCHHHH
Confidence            578999999999999888765310          1356789999999999999998888   788999988899999999


Q ss_pred             HHHHHHhhhcCCCcEEEEEeccCCccccccCHHHHHHHHHHcCCEEEEecccccccccccchh--hhhcCCCCccEEEEC
Q psy14299         84 EQTIQTSLAEKKIPLFVNATAGTTVLGAFDPLDEIATVCEKYDLWMHVDACWGGSLIFSEKYS--FVLKGINRANSVSWN  161 (448)
Q Consensus        84 e~~l~~~~~~~~~~~lVv~~~~~t~tG~~~~l~~I~~ia~~~g~~l~VD~A~~~~~~~~~~~~--~~~~~~~~aD~~~~s  161 (448)
                      ++++++      ++++|++++++|++|.+.|+++|.++|+++|+++|||+||+++..+.....  ... ....+|+++++
T Consensus       145 ~~~i~~------~~~~vi~~~~~~~tG~~~~l~~I~~l~~~~g~~livD~a~~~~~~~~~~~~~~~~~-~~~~vd~~~~s  217 (371)
T PRK13520        145 EDLIDD------NTIGIVGIAGTTELGQVDPIPELSKIALENGIFLHVDAAFGGFVIPFLDDPPNFDF-SLPGVDSITID  217 (371)
T ss_pred             HHHHhh------CCEEEEEEcCCcCCcccCCHHHHHHHHHHcCCCEEEEecchhHHHHhhcCCCCccc-cCCCCceEEEC
Confidence            999975      366788888999999999999999999999999999999998765332211  111 12358999999


Q ss_pred             CccccCCCCceEEEEEeccchhhhhccCCcccccccCcccccccCCCCCcccCCCCchhHHHHHHHHHhChHHHHHHHHH
Q psy14299        162 PHKMLGAPLQCSILLIKEKGLLHQANATAATYLFQQDKFYDVSFDTGDKSVQCGRKVDAFKLWLMWKARGNLGFRHFVDN  241 (448)
Q Consensus       162 ~hK~l~~P~g~G~l~vr~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~g~~~~i~~  241 (448)
                      +|||+++|.++|+++++++...... ....+|+....          .+...+++.                        
T Consensus       218 ~~K~~~a~~~~G~~~~~~~~~~~~l-~~~~~~~~~~~----------~~~~~gt~~------------------------  262 (371)
T PRK13520        218 PHKMGLAPIPAGGILFRDESYLDAL-AVDTPYLTSKK----------QATLTGTRS------------------------  262 (371)
T ss_pred             CccccCccCCceEEEEcCHHHHHhh-cccCccccCCC----------CcceEeecc------------------------
Confidence            9999999999999998776544332 22223332111          000011111                        


Q ss_pred             hhhhccCCCccchhhhhhhhhhhhhhhhhhhhhhhccccccccccCCCCCccccccchhhHHHHHHHHHhcCccHHHHHH
Q psy14299        242 AVDCSRGSMTFSTLLCFDLQGLLHQANATAATYLFQQDKFYDVSFDTGDKSVQCGRKVDAFKLWLMWKARGNLGFRHFVD  321 (448)
Q Consensus       242 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~  321 (448)
                                                                              ...+.+++.+++.++.+|++++.+
T Consensus       263 --------------------------------------------------------~~~~~~~~~al~~l~~~g~~~~~~  286 (371)
T PRK13520        263 --------------------------------------------------------GAGVAATYAVMKYLGREGYRKVVE  286 (371)
T ss_pred             --------------------------------------------------------ChHHHHHHHHHhhhcHhHHHHHHH
Confidence                                                                    122445566677777888888999


Q ss_pred             HHHHHHHHHHHHhhcCCCeEEeccCCceeeEEEEeeccCCCccccchhhhhhhhhhhHHHHHHHHhCCcEEEEeeecCCc
Q psy14299        322 NAVDCSRYFLSQISQRPGFRLVIPEFQCTNICFWFIPVSLRDKVEDETWWSTLSKVAPRIKEKLVLGGTLMIGYQPLQHR  401 (448)
Q Consensus       322 ~~~~l~~~~~~~L~~~pg~~l~~~~~~~~~v~f~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~L~~~g~~~~~~~~~~g~  401 (448)
                      +..++++++.+.|+++ |++++ .++..++++|.+.+                   ..++.+.|.++|+ .+...  .+ 
T Consensus       287 ~~~~~~~~l~~~L~~~-g~~~~-~~~~~~~v~~~~~~-------------------~~~v~~~L~~~gi-~v~~~--~~-  341 (371)
T PRK13520        287 RCMENTRWLAEELKER-GFEPV-IEPVLNIVAFDDPN-------------------PDEVREKLRERGW-RVSVT--RC-  341 (371)
T ss_pred             HHHHHHHHHHHHHHhC-CCEEe-cCCCceEEEEecCC-------------------HHHHHHHHHHCCc-eeccC--CC-
Confidence            9999999999999998 99855 45566777765321                   1378888998884 44432  12 


Q ss_pred             ccccEEEEEecCCCCCCHHHHHHHHHHHHHHHH
Q psy14299        402 NLHNFFRLVTTCHPASSRQDMDYAIDQIELRGA  434 (448)
Q Consensus       402 ~~~~~lRis~~~~~~~t~edid~l~~al~~~~~  434 (448)
                        +.++|+|+  ++++|++||++++++|+++.+
T Consensus       342 --~~~iRis~--~~~~t~edi~~~~~~l~~~~~  370 (371)
T PRK13520        342 --PEALRIVC--MPHVTREHIENFLEDLKEVKK  370 (371)
T ss_pred             --CCEEEEEE--ECCCCHHHHHHHHHHHHHHhh
Confidence              26899999  579999999999999998754

>TIGR03392 FeS_syn_CsdA cysteine desulfurase, catalytic subunit CsdA

Probab=99.97  E-value=2.2e-28  Score=250.42  Aligned_cols=305  Identities=15%  Similarity=0.101  Sum_probs=217.7

Q ss_pred             cEEEeCcHHHHHHHHHHHHHHhcCCcccccCCCCCCCeEEEecCCCchHH----HHHHHHhCCCCCcEEEEecCCCCCcC
Q psy14299          4 KPFLLPGGSISNMYSICLARYRLDPDTKRKGLSHLPPLCMFTSEDSHYSM----LKAAHWLGIGMDNVIRVKTNERGQMI   79 (448)
Q Consensus         4 ~g~~t~ggT~an~~al~~a~~~~~~~~~~~G~~~~~~~~Vl~~~~~H~s~----~~~~~~~g~~~~~v~~v~~~~~g~id   79 (448)
                      ..+||+|+|+++.+++.+.....        +  .+++.|++++.+|++.    ...++..|.   +++.+|.++++.+|
T Consensus        80 ~i~~t~g~t~~l~~~~~~~~~~~--------~--~~gd~Vl~~~~~~~s~~~~~~~~~~~~g~---~v~~v~~~~~~~~~  146 (398)
T TIGR03392        80 NIVWTRGTTESINLVAQSYARPR--------L--QPGDEIIVSEAEHHANLIPWLMVAQQTGA---KVVKLPIGADLLPD  146 (398)
T ss_pred             eEEEeCChHHHHHHHHHHhhhcc--------C--CCCCEEEECCcchhHHHHHHHHHHHHcCc---EEEEEecCCCCCcC
Confidence            47899999999877776543210        0  2667899999999884    345566777   79999998888899


Q ss_pred             HHHHHHHHHHhhhcCCCcEEEEEeccCCccccccCHHHHHHHHHHcCCEEEEecccccccccccchhhhhcCCCCccEEE
Q psy14299         80 CSFLEQTIQTSLAEKKIPLFVNATAGTTVLGAFDPLDEIATVCEKYDLWMHVDACWGGSLIFSEKYSFVLKGINRANSVS  159 (448)
Q Consensus        80 ~e~Le~~l~~~~~~~~~~~lVv~~~~~t~tG~~~~l~~I~~ia~~~g~~l~VD~A~~~~~~~~~~~~~~~~~~~~aD~~~  159 (448)
                      ++++++++.+      ++++|++++++|++|.+.|+++|+++||++|++++||++|+.+..+.+.     ... .+|+++
T Consensus       147 ~~~l~~~i~~------~t~lv~i~~~~n~tG~~~~~~~i~~~~~~~~~~~ivD~a~~~~~~~~~~-----~~~-~~d~~~  214 (398)
T TIGR03392       147 IRQLPELLTP------RTRILALGQMSNVTGGCPDLARAITLAHQYGAVVVVDGAQGVVHGPPDV-----QAL-DIDFYA  214 (398)
T ss_pred             HHHHHHHhcc------CceEEEEECccccccccCCHHHHHHHHHHcCCEEEEEhhhhcCCCCCCh-----hhc-CCCEEE
Confidence            9999999864      5789999999999999999999999999999999999999887765432     122 479999


Q ss_pred             ECCccccCCCCceEEEEEeccchhhhhccCCcccccccCcccccccCCCCCcccCCCCchhHHHHHHHHHhChHHHHHHH
Q psy14299        160 WNPHKMLGAPLQCSILLIKEKGLLHQANATAATYLFQQDKFYDVSFDTGDKSVQCGRKVDAFKLWLMWKARGNLGFRHFV  239 (448)
Q Consensus       160 ~s~hK~l~~P~g~G~l~vr~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~g~~~~i  239 (448)
                      +|+||+ ++|.|+|+++++++ .+...    .++.......  ...+...+.                            
T Consensus       215 ~s~~K~-~gp~G~G~l~~~~~-~~~~~----~~~~~~~~~~--~~~~~~~~~----------------------------  258 (398)
T TIGR03392       215 FSGHKL-YGPTGIGVLYGKTE-LLEAM----PPWQGGGKML--SHVSFDGFI----------------------------  258 (398)
T ss_pred             Eecccc-cCCCceEEEEEcHH-HHhhC----CCeecCCceE--eeccccccc----------------------------
Confidence            999995 56889999998654 33322    1121110000  000000000                            


Q ss_pred             HHhhhhccCCCccchhhhhhhhhhhhhhhhhhhhhhhccccccccccCCCCCccccc--cchhhHHHHHHHHHhcCccHH
Q psy14299        240 DNAVDCSRGSMTFSTLLCFDLQGLLHQANATAATYLFQQDKFYDVSFDTGDKSVQCG--RKVDAFKLWLMWKARGNLGFR  317 (448)
Q Consensus       240 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~G~~  317 (448)
                                                                    +......|+.+  +.+.++++..+++++...|++
T Consensus       259 ----------------------------------------------~~~~~~~~e~GT~~~~~~~a~~~al~~l~~~g~~  292 (398)
T TIGR03392       259 ----------------------------------------------PQAVPHRFEAGTPNIAGVIGLSAALEWLTDIDIA  292 (398)
T ss_pred             ----------------------------------------------cCCChhhccCCCCCHHHHHHHHHHHHHHHHhCHH
Confidence                                                          00000112222  245677888889988889999


Q ss_pred             HHHHHHHHHHHHHHHHhhcCCCeEEeccCCceeeEEEEeeccCCCccccchhhhhhhhhhhHHHHHHHHhCCcEEEEeee
Q psy14299        318 HFVDNAVDCSRYFLSQISQRPGFRLVIPEFQCTNICFWFIPVSLRDKVEDETWWSTLSKVAPRIKEKLVLGGTLMIGYQP  397 (448)
Q Consensus       318 ~~~~~~~~l~~~~~~~L~~~pg~~l~~~~~~~~~v~f~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~L~~~g~~~~~~~~  397 (448)
                      ++.++..++++++.+.|+++||++++ ..+..++++|.+.  ++.               ..++.+.|.++| +.+..+.
T Consensus       293 ~i~~~~~~l~~~l~~~l~~l~g~~~~-~~~~~~i~~~~~~--~~~---------------~~~l~~~L~~~g-I~v~~g~  353 (398)
T TIGR03392       293 AAEAWSVSLADLAEERLAQLPGFRSF-RCPGSSLLAFDFA--GVH---------------HSDLAALLAESG-IALRAGQ  353 (398)
T ss_pred             HHHHHHHHHHHHHHHHHhcCCCeEEe-CCCCCcEEEEEeC--CcC---------------HHHHHHHHHhCC-EEEecCc
Confidence            99999999999999999999999987 5566677777642  222               136778888888 5554332


Q ss_pred             cCC------cccccEEEEEecCCCCCCHHHHHHHHHHHHHHHHHh
Q psy14299        398 LQH------RNLHNFFRLVTTCHPASSRQDMDYAIDQIELRGAEV  436 (448)
Q Consensus       398 ~~g------~~~~~~lRis~~~~~~~t~edid~l~~al~~~~~~~  436 (448)
                      ...      ...++++|+|+  |+|||++||++++++|+++.+++
T Consensus       354 ~~~~~~~~~~g~~~~iRvS~--~~~~t~~ei~~l~~~l~~~~~~~  396 (398)
T TIGR03392       354 HCAQPLMAALGVSGTLRASF--APYNTQQDVDALVDAVGAALELL  396 (398)
T ss_pred             cchHHHHHHhCCCCEEEEEe--eccCCHHHHHHHHHHHHHHHHHh
Confidence            110      01136899999  78999999999999999987653

Members of this protein family are CsdS. This protein, found Escherichia coli, Yersinia pestis, Photorhabdus luminescens, and related species, and related to SufS, works together with and physically interacts with CsdE (a paralog of SufE). CsdA has cysteine desulfurase activity that is enhanced by CsdE, a sulfur acceptor protein. This gene pair, although involved in FeS cluster biosynthesis, is not found next to other such genes as are its paralogs from the Suf or Isc systems.

>PRK10874 cysteine sulfinate desulfinase; Provisional

Probab=99.97  E-value=2.6e-28  Score=250.17  Aligned_cols=305  Identities=13%  Similarity=0.095  Sum_probs=218.7

Q ss_pred             cEEEeCcHHHHHHHHHHHHHHhcCCcccccCCCCCCCeEEEecCCCchHH----HHHHHHhCCCCCcEEEEecCCCCCcC
Q psy14299          4 KPFLLPGGSISNMYSICLARYRLDPDTKRKGLSHLPPLCMFTSEDSHYSM----LKAAHWLGIGMDNVIRVKTNERGQMI   79 (448)
Q Consensus         4 ~g~~t~ggT~an~~al~~a~~~~~~~~~~~G~~~~~~~~Vl~~~~~H~s~----~~~~~~~g~~~~~v~~v~~~~~g~id   79 (448)
                      ..+||+|+|+++..++........          .+++.|++++.+|++.    ...++..|.   +++.+|.+.++.+|
T Consensus        83 ~i~~~~~~t~~i~~~~~~~~~~~~----------~~gd~vl~~~~~~~s~~~~~~~~~~~~g~---~v~~v~~~~~~~~d  149 (401)
T PRK10874         83 NIVWTRGTTESINLVAQSYARPRL----------QPGDEIIVSEAEHHANLVPWLMVAQQTGA---KVVKLPLGADRLPD  149 (401)
T ss_pred             EEEEECCHHHHHHHHHHHhhhccC----------CCcCEEEECCcchHHHHHHHHHHHHHhCC---EEEEEecCCCCcCC
Confidence            478999999998777665432100          2667899999999874    345566677   79999998888999


Q ss_pred             HHHHHHHHHHhhhcCCCcEEEEEeccCCccccccCHHHHHHHHHHcCCEEEEecccccccccccchhhhhcCCCCccEEE
Q psy14299         80 CSFLEQTIQTSLAEKKIPLFVNATAGTTVLGAFDPLDEIATVCEKYDLWMHVDACWGGSLIFSEKYSFVLKGINRANSVS  159 (448)
Q Consensus        80 ~e~Le~~l~~~~~~~~~~~lVv~~~~~t~tG~~~~l~~I~~ia~~~g~~l~VD~A~~~~~~~~~~~~~~~~~~~~aD~~~  159 (448)
                      ++++++.+++      ++++|++++++|+||.+.|+++|+++|+++|++++||++|+.+..+.+.     ..+ .+|+++
T Consensus       150 ~~~l~~~i~~------~t~lv~i~~~~n~tG~~~~~~~i~~l~~~~g~~~ivD~a~~~g~~~~~~-----~~~-~~d~~~  217 (401)
T PRK10874        150 VDLLPELITP------RTRILALGQMSNVTGGCPDLARAITLAHQAGMVVMVDGAQGAVHFPADV-----QAL-DIDFYA  217 (401)
T ss_pred             HHHHHHhcCc------CcEEEEEeCCcccccCcCCHHHHHHHHHHcCCEEEEECCcccccccCCc-----hhc-CCCEEE
Confidence            9999999954      5889999999999999999999999999999999999999987765432     122 479999


Q ss_pred             ECCccccCCCCceEEEEEeccchhhhhccCCcccccccCcccccccCCCCCcccCCCCchhHHHHHHHHHhChHHHHHHH
Q psy14299        160 WNPHKMLGAPLQCSILLIKEKGLLHQANATAATYLFQQDKFYDVSFDTGDKSVQCGRKVDAFKLWLMWKARGNLGFRHFV  239 (448)
Q Consensus       160 ~s~hK~l~~P~g~G~l~vr~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~g~~~~i  239 (448)
                      +|+||+ ++|.|+|+++++++ .+...    .++.........  .++..+.                            
T Consensus       218 ~s~~K~-~gp~G~G~l~~~~~-~~~~~----~~~~~~~~~~~~--~~~~~~~----------------------------  261 (401)
T PRK10874        218 FSGHKL-YGPTGIGVLYGKSE-LLEAM----SPWQGGGKMLTE--VSFDGFT----------------------------  261 (401)
T ss_pred             Eecccc-cCCCccEEEEEchH-HHhcC----CCeecCCcceEe--eccCccC----------------------------
Confidence            999995 56999999998764 33322    112111000000  0000000                            


Q ss_pred             HHhhhhccCCCccchhhhhhhhhhhhhhhhhhhhhhhccccccccccCCCCCccc--cccchhhHHHHHHHHHhcCccHH
Q psy14299        240 DNAVDCSRGSMTFSTLLCFDLQGLLHQANATAATYLFQQDKFYDVSFDTGDKSVQ--CGRKVDAFKLWLMWKARGNLGFR  317 (448)
Q Consensus       240 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~G~~  317 (448)
                                                                    .......|+  ..+.+.++++..+++++..+|++
T Consensus       262 ----------------------------------------------~~~~~~~~e~Gt~~~~~~~al~~al~~l~~~g~~  295 (401)
T PRK10874        262 ----------------------------------------------PQSAPWRFEAGTPNVAGVIGLSAALEWLADIDIN  295 (401)
T ss_pred             ----------------------------------------------CCCChhhccCCCcCHHHHHHHHHHHHHHHHhCHH
Confidence                                                          000011121  22356778888889988889999


Q ss_pred             HHHHHHHHHHHHHHHHhhcCCCeEEeccCCceeeEEEEeeccCCCccccchhhhhhhhhhhHHHHHHHHhCCcEEEEeee
Q psy14299        318 HFVDNAVDCSRYFLSQISQRPGFRLVIPEFQCTNICFWFIPVSLRDKVEDETWWSTLSKVAPRIKEKLVLGGTLMIGYQP  397 (448)
Q Consensus       318 ~~~~~~~~l~~~~~~~L~~~pg~~l~~~~~~~~~v~f~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~L~~~g~~~~~~~~  397 (448)
                      .+.++...+++++.+.|+++||++++ .++..++++|.+.  ++.               ..++.+.|.++|+ .+..+.
T Consensus       296 ~~~~~~~~l~~~l~~~l~~~~g~~~~-~~~~~~i~~~~~~--~~~---------------~~~~~~~L~~~gI-~v~~g~  356 (401)
T PRK10874        296 QAESWSRSLATLAEDALAKLPGFRSF-RCQDSSLLAFDFA--GVH---------------HSDLVTLLAEYGI-ALRAGQ  356 (401)
T ss_pred             HHHHHHHHHHHHHHHHHhcCCCEEEe-CCCCCcEEEEEEC--CcC---------------HHHHHHHHHHCCc-EEeccc
Confidence            99999999999999999999999987 6666777777642  221               1367788888884 444332


Q ss_pred             cCC------cccccEEEEEecCCCCCCHHHHHHHHHHHHHHHHHh
Q psy14299        398 LQH------RNLHNFFRLVTTCHPASSRQDMDYAIDQIELRGAEV  436 (448)
Q Consensus       398 ~~g------~~~~~~lRis~~~~~~~t~edid~l~~al~~~~~~~  436 (448)
                      ...      .+..+++|+|+  ++|||++|||+++++|+++.+.+
T Consensus       357 ~~~~~~~~~~g~~~~iRiS~--~~~nt~edid~ll~al~~~~~~~  399 (401)
T PRK10874        357 HCAQPLLAALGVTGTLRASF--APYNTQSDVDALVNAVDRALELL  399 (401)
T ss_pred             cchHHHHHHhCCCCEEEEEe--cccCCHHHHHHHHHHHHHHHHHh
Confidence            111      01137899999  78999999999999999987653

>TIGR03812 tyr_de_CO2_Arch tyrosine decarboxylase MnfA

Probab=99.97  E-value=3.6e-28  Score=246.37  Aligned_cols=292  Identities=22%  Similarity=0.355  Sum_probs=211.6

Q ss_pred             ccEEEeCcHHHHHHHHHHHHHHhcCCcccccCCCCCCCeEEEecCCCchHHHHHHHHhCCCCCcEEEEecCCCCCcCHHH
Q psy14299          3 LKPFLLPGGSISNMYSICLARYRLDPDTKRKGLSHLPPLCMFTSEDSHYSMLKAAHWLGIGMDNVIRVKTNERGQMICSF   82 (448)
Q Consensus         3 ~~g~~t~ggT~an~~al~~a~~~~~~~~~~~G~~~~~~~~Vl~~~~~H~s~~~~~~~~g~~~~~v~~v~~~~~g~id~e~   82 (448)
                      ..+++++|||++|.+++.+++....     .+   .+++.|++++.+|+++.+.++..|+   +++.++.++++.+|+++
T Consensus        77 ~~~~~~~g~~~~~~~~~~~~~~~~~-----~~---~~g~~vl~~~~~h~~~~~~~~~~G~---~~~~v~~~~~~~~d~~~  145 (373)
T TIGR03812        77 AYGYIVSGGTEANIQAVRAAKNLAR-----EE---KRTPNIIVPESAHFSFEKAAEMLGL---ELRYAPLDEDYTVDVKD  145 (373)
T ss_pred             CCeEEeccHHHHHHHHHHHHHHHHh-----cc---CCCcEEEECCcchHHHHHHHHHcCC---eEEEEeeCCCCCcCHHH
Confidence            3578999999999888876654210     00   1446789999999999999999998   78999998889999999


Q ss_pred             HHHHHHHhhhcCCCcEEEEEeccCCccccccCHHHHHHHHHHcCCEEEEecccccccccccch-----hhhhcCCCCccE
Q psy14299         83 LEQTIQTSLAEKKIPLFVNATAGTTVLGAFDPLDEIATVCEKYDLWMHVDACWGGSLIFSEKY-----SFVLKGINRANS  157 (448)
Q Consensus        83 Le~~l~~~~~~~~~~~lVv~~~~~t~tG~~~~l~~I~~ia~~~g~~l~VD~A~~~~~~~~~~~-----~~~~~~~~~aD~  157 (448)
                      +++++++      ++..+++++++|++|.+.|+++|.++||++|+++|||+||+++......+     ...+ ....+|+
T Consensus       146 l~~~l~~------~~~~vv~~~~~~~tG~~~~~~~i~~l~~~~~~~livD~a~~~~~~~~~~~~~~~~~~d~-~~~~~d~  218 (373)
T TIGR03812       146 VEDLIDD------NTIGIVGIAGTTELGQIDDIEELSKIALENGIYLHVDAAFGGFVIPFLKKGYNPPPFDF-SLPGVQS  218 (373)
T ss_pred             HHHHHhh------CcEEEEEECCCCCCCccCCHHHHHHHHHHcCCeEEEEcCchhHHHHHHhcCCCCCCccc-cCCCCCE
Confidence            9999965      24456666688999999999999999999999999999999776533211     1111 1225799


Q ss_pred             EEECCccccCCCCceEEEEEeccchhhhhccCCcccccccCcccccccCCCCCcccCCCCchhHHHHHHHHHhChHHHHH
Q psy14299        158 VSWNPHKMLGAPLQCSILLIKEKGLLHQANATAATYLFQQDKFYDVSFDTGDKSVQCGRKVDAFKLWLMWKARGNLGFRH  237 (448)
Q Consensus       158 ~~~s~hK~l~~P~g~G~l~vr~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~g~~~  237 (448)
                      +++++|||+.+|.++|.+++++++.+... ....+|+....          .....+++.                    
T Consensus       219 ~~~s~~K~~~~~~~~G~~~~~~~~~~~~l-~~~~~~~~~~~----------~~~~~gt~~--------------------  267 (373)
T TIGR03812       219 ITIDPHKMGLSPIPAGGILFRSKSYLKYL-SVDAPYLTVKK----------QATITGTRS--------------------  267 (373)
T ss_pred             EEECccccCCCcCCceEEEEeCHHHHhhh-cccCcccCCCC----------CcceEeech--------------------
Confidence            99999999999999998887776554432 12223332110          000011111                    


Q ss_pred             HHHHhhhhccCCCccchhhhhhhhhhhhhhhhhhhhhhhccccccccccCCCCCccccccchhhHHHHHHHHHhcCccHH
Q psy14299        238 FVDNAVDCSRGSMTFSTLLCFDLQGLLHQANATAATYLFQQDKFYDVSFDTGDKSVQCGRKVDAFKLWLMWKARGNLGFR  317 (448)
Q Consensus       238 ~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~  317 (448)
                                                                                  ...+.++..++++++++|++
T Consensus       268 ------------------------------------------------------------~~~~~~~~~~l~~l~~~g~~  287 (373)
T TIGR03812       268 ------------------------------------------------------------GASAAATYAVIKYLGREGYR  287 (373)
T ss_pred             ------------------------------------------------------------hHHHHHHHHHHHHhCHHHHH
Confidence                                                                        12244556677778888999


Q ss_pred             HHHHHHHHHHHHHHHHhhcCCCeEEeccCCceeeEEEEeeccCCCccccchhhhhhhhhhhHHHHHHHHhCCcEEEEeee
Q psy14299        318 HFVDNAVDCSRYFLSQISQRPGFRLVIPEFQCTNICFWFIPVSLRDKVEDETWWSTLSKVAPRIKEKLVLGGTLMIGYQP  397 (448)
Q Consensus       318 ~~~~~~~~l~~~~~~~L~~~pg~~l~~~~~~~~~v~f~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~L~~~g~~~~~~~~  397 (448)
                      ++.++..++++++++.|+++ |++.+ .++..++++|...  +                 ..++.++|.++| +++....
T Consensus       288 ~~~~~~~~~~~~l~~~L~~~-g~~~~-~~~~~~~v~~~~~--~-----------------~~~v~~~L~~~g-i~v~~~~  345 (373)
T TIGR03812       288 KIVAECMENTRYLVEELKKI-GFEPV-IEPVLNIVAFEVD--D-----------------PEEVRKKLRDRG-WYVSVTR  345 (373)
T ss_pred             HHHHHHHHHHHHHHHHHHhC-CCeEE-cCCCceEEEEEeC--C-----------------HHHHHHHHHHCC-ceeccCC
Confidence            99999999999999999998 66654 4466777777542  1                 126888999998 4444321


Q ss_pred             cCCcccccEEEEEecCCCCCCHHHHHHHHHHHHHH
Q psy14299        398 LQHRNLHNFFRLVTTCHPASSRQDMDYAIDQIELR  432 (448)
Q Consensus       398 ~~g~~~~~~lRis~~~~~~~t~edid~l~~al~~~  432 (448)
                        +   +.++|+++  +.++|++|+++++++|+++
T Consensus       346 --~---~~~iRis~--~~~~t~edid~l~~~L~~~  373 (373)
T TIGR03812       346 --C---PKALRIVV--MPHVTREHIEEFLEDLKEI  373 (373)
T ss_pred             --C---CCEEEEEE--ECCCCHHHHHHHHHHHhhC
Confidence              2   26899999  5789999999999999863

Members of this protein family are the archaeal form, MnfA, of tyrosine decarboxylase, and are involved in methanofuran biosynthesis. Members show clear homology to the Enterococcus form, Tdc, that is involved in tyrosine decarboxylation for resistance to acidic conditions.

>TIGR01977 am_tr_V_EF2568 cysteine desulfurase family protein

Probab=99.97  E-value=5.1e-28  Score=245.56  Aligned_cols=295  Identities=12%  Similarity=0.104  Sum_probs=213.9

Q ss_pred             cEEEeCcHHHHHHHHHHHHHHhcCCcccccCCCCCCCeEEEecCCCchHHHHH----HHHhCCCCCcEEEEecCCCCCcC
Q psy14299          4 KPFLLPGGSISNMYSICLARYRLDPDTKRKGLSHLPPLCMFTSEDSHYSMLKA----AHWLGIGMDNVIRVKTNERGQMI   79 (448)
Q Consensus         4 ~g~~t~ggT~an~~al~~a~~~~~~~~~~~G~~~~~~~~Vl~~~~~H~s~~~~----~~~~g~~~~~v~~v~~~~~g~id   79 (448)
                      .++||+|+|+++.+++....+              +++.|+++..+|.++...    ++..|.   +++.++.++++.+|
T Consensus        64 ~v~~~~g~t~al~~~~~~~~~--------------~gd~vl~~~~~~~~~~~~~~~~~~~~g~---~~~~v~~~~~~~~d  126 (376)
T TIGR01977        64 HVVFTNNATTALNIALKGLLK--------------EGDHVITTPMEHNSVARPLECLKEQIGV---EITIVKCDNEGLIS  126 (376)
T ss_pred             eEEEeCCHHHHHHHHHHhccC--------------CCCEEEECcchhhHHHHHHHHHHHHcCc---EEEEEecCCCCCcC
Confidence            478999999998877655322              567789999999987643    444476   78899988888999


Q ss_pred             HHHHHHHHHHhhhcCCCcEEEEEeccCCccccccCHHHHHHHHHHcCCEEEEecccccccccccchhhhhcCCCCccEEE
Q psy14299         80 CSFLEQTIQTSLAEKKIPLFVNATAGTTVLGAFDPLDEIATVCEKYDLWMHVDACWGGSLIFSEKYSFVLKGINRANSVS  159 (448)
Q Consensus        80 ~e~Le~~l~~~~~~~~~~~lVv~~~~~t~tG~~~~l~~I~~ia~~~g~~l~VD~A~~~~~~~~~~~~~~~~~~~~aD~~~  159 (448)
                      ++++++++++      ++++|++++++|++|.+.|+++|.++||++|++++||+||++|..+.+...      ..+|+++
T Consensus       127 ~~~l~~~~~~------~~~~v~~~~~~n~tG~~~~~~~i~~l~~~~~~~livD~a~~~g~~~~~~~~------~~~D~~~  194 (376)
T TIGR01977       127 PERIKRAIKT------NTKLIVVSHASNVTGTILPIEEIGELAQENGIFFILDAAQTAGVIPIDMTE------LAIDMLA  194 (376)
T ss_pred             HHHHHHhcCC------CCeEEEEECCCCCccccCCHHHHHHHHHHcCCEEEEEhhhccCccCCCchh------cCCCEEE
Confidence            9999999854      578999999999999999999999999999999999999999987654311      2589999


Q ss_pred             ECCccccCCCCceEEEEEeccchhhhhccCCcccccccCcccccccCCCCCcccCCCCchhHHHHHHHHHhChHHHHHHH
Q psy14299        160 WNPHKMLGAPLQCSILLIKEKGLLHQANATAATYLFQQDKFYDVSFDTGDKSVQCGRKVDAFKLWLMWKARGNLGFRHFV  239 (448)
Q Consensus       160 ~s~hK~l~~P~g~G~l~vr~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~g~~~~i  239 (448)
                      +++|||+++|.|+|+++++++..+.........+.   .    ...+.. .  ....++                     
T Consensus       195 ~s~~K~l~~p~g~g~l~~~~~~~~~~~~~~~~~~~---~----~~~~~~-~--~~~~r~---------------------  243 (376)
T TIGR01977       195 FTGHKGLLGPQGTGGLYIREGIKLKPLKSGGTGSH---S----ALIDQP-S--ELPDRF---------------------  243 (376)
T ss_pred             ecccccccCCCCceEEEEcCCcCcCceecCCCccc---c----cccccc-c--cchhhc---------------------
Confidence            99999999999999999988752222111000000   0    000000 0  000000                     


Q ss_pred             HHhhhhccCCCccchhhhhhhhhhhhhhhhhhhhhhhccccccccccCCCCCccccccchhhHHHHHHHHHhcCccHHHH
Q psy14299        240 DNAVDCSRGSMTFSTLLCFDLQGLLHQANATAATYLFQQDKFYDVSFDTGDKSVQCGRKVDAFKLWLMWKARGNLGFRHF  319 (448)
Q Consensus       240 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~  319 (448)
                                                                          .....+.+...++..+++++.++|++.+
T Consensus       244 ----------------------------------------------------~~~t~~~~~~~a~~~al~~~~~~g~~~~  271 (376)
T TIGR01977       244 ----------------------------------------------------ESGTLNTPGIAGLNAGIKFIEKIGIANI  271 (376)
T ss_pred             ----------------------------------------------------cCCCCCHHHHHHHHHHHHHHHHhCHHHH
Confidence                                                                0112234556777788899999999999


Q ss_pred             HHHHHHHHHHHHHHhhcCCCeEEeccCC----ceeeEEEEeeccCCCccccchhhhhhhhhhhHHHHHHHHhC-CcEEEE
Q psy14299        320 VDNAVDCSRYFLSQISQRPGFRLVIPEF----QCTNICFWFIPVSLRDKVEDETWWSTLSKVAPRIKEKLVLG-GTLMIG  394 (448)
Q Consensus       320 ~~~~~~l~~~~~~~L~~~pg~~l~~~~~----~~~~v~f~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~L~~~-g~~~~~  394 (448)
                      .++..++++++.+.|.+++|++++ .+.    ..++++|...  +++               ..++.+.|.++ | +.+.
T Consensus       272 ~~~~~~l~~~~~~~l~~~~~~~~~-~~~~~~~~~~~v~~~~~--~~~---------------~~~~~~~L~~~~g-i~v~  332 (376)
T TIGR01977       272 AKKECMLTEKLLNGLREINKVKIY-GPADPANRVGVVSFTVE--GID---------------SEEVADILDEKFD-IATR  332 (376)
T ss_pred             HHHHHHHHHHHHHHHhcCCCeEEe-CCCCccccCCeEEEEEC--CCC---------------HHHHHHHHhccCC-EEEE
Confidence            999999999999999999999998 431    3566777652  222               13688888887 6 5554


Q ss_pred             eeecC--------CcccccEEEEEecCCCCCCHHHHHHHHHHHHH
Q psy14299        395 YQPLQ--------HRNLHNFFRLVTTCHPASSRQDMDYAIDQIEL  431 (448)
Q Consensus       395 ~~~~~--------g~~~~~~lRis~~~~~~~t~edid~l~~al~~  431 (448)
                      .+...        |....+.+|+++  +.++|++||++++++|++
T Consensus       333 ~g~~~~~~~~~~~g~~~~~~iRis~--~~~~t~~dv~~~~~~l~~  375 (376)
T TIGR01977       333 TGLHCAPLAHKTIGTFATGTIRLSL--GYFNTEEEIEKLLEALSE  375 (376)
T ss_pred             cccccchHHHHHhCCCCCCeEEEec--CCCCCHHHHHHHHHHHhh
Confidence            33211        111236899999  789999999999999985

This model describes a subfamily of probable pyridoxal phosphate-dependent enzymes in the aminotransferase class V family. Related families contain members active as cysteine desulfurases, selenocysteine lyases, or both. The members of this family form a distinct clade and all are shorter at the N-terminus. The function of this subfamily is unknown.

>TIGR03402 FeS_nifS cysteine desulfurase NifS

Probab=99.97  E-value=8.7e-28  Score=244.43  Aligned_cols=290  Identities=16%  Similarity=0.151  Sum_probs=207.7

Q ss_pred             cEEEeCcHHHHHHHHHHHHHHhcCCcccccCCCCCCCeEEEecCCCchHHHHHHHHh---CCCCCcEEEEecCCCCCcCH
Q psy14299          4 KPFLLPGGSISNMYSICLARYRLDPDTKRKGLSHLPPLCMFTSEDSHYSMLKAAHWL---GIGMDNVIRVKTNERGQMIC   80 (448)
Q Consensus         4 ~g~~t~ggT~an~~al~~a~~~~~~~~~~~G~~~~~~~~Vl~~~~~H~s~~~~~~~~---g~~~~~v~~v~~~~~g~id~   80 (448)
                      .++||+|+|+++..++.......           .+++.|+++..+|+++...+...   |.   +++.+|.+++|.+|+
T Consensus        61 ~i~~t~~~t~a~~~al~~~~~~~-----------~~~~~vv~~~~~~~s~~~~~~~~~~~G~---~v~~v~~~~~g~~~~  126 (379)
T TIGR03402        61 EIIFTSGGTESDNTAIKSALAAQ-----------PEKRHIITTAVEHPAVLSLCQHLEKQGY---KVTYLPVDEEGRLDL  126 (379)
T ss_pred             eEEEeCcHHHHHHHHHHHHHHhc-----------CCCCeEEEcccccHHHHHHHHHHHHcCC---EEEEEccCCCCcCCH
Confidence            47899999999998887654320           13467889999999987766544   55   788999888899999


Q ss_pred             HHHHHHHHHhhhcCCCcEEEEEeccCCccccccCHHHHHHHHHHcCCEEEEecccccccccccchhhhhcCCCCccEEEE
Q psy14299         81 SFLEQTIQTSLAEKKIPLFVNATAGTTVLGAFDPLDEIATVCEKYDLWMHVDACWGGSLIFSEKYSFVLKGINRANSVSW  160 (448)
Q Consensus        81 e~Le~~l~~~~~~~~~~~lVv~~~~~t~tG~~~~l~~I~~ia~~~g~~l~VD~A~~~~~~~~~~~~~~~~~~~~aD~~~~  160 (448)
                      +++++.+++      +++++++++++|++|.+.|+++|+++||+||+++|+|++|+.+..+.+..     .. .+|++++
T Consensus       127 ~~l~~~i~~------~~~lv~i~~~~n~tG~~~~~~~I~~l~~~~g~~vivD~~~~~g~~~~~~~-----~~-~~D~~~~  194 (379)
T TIGR03402       127 EELRAAITD------DTALVSVMWANNETGTIFPIEEIGEIAKERGALFHTDAVQAVGKIPIDLK-----EM-NIDMLSL  194 (379)
T ss_pred             HHHHHhcCC------CcEEEEEEcccCCeeecccHHHHHHHHHHcCCEEEEECcccccccccCcc-----cC-CCCEEEE
Confidence            999999864      47899999999999999999999999999999999999999987765532     12 5899999


Q ss_pred             CCccccCCCCceEEEEEeccchhhhhccCCcccccccCcccccccCCCCCcccCCCCchhHHHHHHHHHhChHHHHHHHH
Q psy14299        161 NPHKMLGAPLQCSILLIKEKGLLHQANATAATYLFQQDKFYDVSFDTGDKSVQCGRKVDAFKLWLMWKARGNLGFRHFVD  240 (448)
Q Consensus       161 s~hK~l~~P~g~G~l~vr~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~g~~~~i~  240 (448)
                      ++|| +++|.|+|+++++++..+      . +++.....         ....+.+                         
T Consensus       195 s~~K-~~gp~G~g~l~v~~~~~~------~-p~~~g~~~---------~~~~~~g-------------------------  232 (379)
T TIGR03402       195 SGHK-LHGPKGVGALYIRKGTRF------R-PLLRGGHQ---------ERGRRAG-------------------------  232 (379)
T ss_pred             cHHH-cCCCCceEEEEECCCCCC------C-CcccCCcc---------CCCcCCC-------------------------
Confidence            9999 678999999999765311      1 11110000         0000000                         


Q ss_pred             HhhhhccCCCccchhhhhhhhhhhhhhhhhhhhhhhccccccccccCCCCCccccccchhhHHHHHHHHHhcCccHHHHH
Q psy14299        241 NAVDCSRGSMTFSTLLCFDLQGLLHQANATAATYLFQQDKFYDVSFDTGDKSVQCGRKVDAFKLWLMWKARGNLGFRHFV  320 (448)
Q Consensus       241 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~  320 (448)
                                                                            ..+.+.++++..++++... +++.+.
T Consensus       233 ------------------------------------------------------t~~~~~~~~l~~al~~~~~-~~~~~~  257 (379)
T TIGR03402       233 ------------------------------------------------------TENVPGIVGLGKAAELATE-HLEEEN  257 (379)
T ss_pred             ------------------------------------------------------CccHHHHHHHHHHHHHHHH-hHHHHH
Confidence                                                                  0112223344444544433 577888


Q ss_pred             HHHHHHHHHHHHHhhc-CCCeEEeccCC--c-eeeEEEEeeccCCCccccchhhhhhhhhhhHHHHHHHHhCCcEEEEee
Q psy14299        321 DNAVDCSRYFLSQISQ-RPGFRLVIPEF--Q-CTNICFWFIPVSLRDKVEDETWWSTLSKVAPRIKEKLVLGGTLMIGYQ  396 (448)
Q Consensus       321 ~~~~~l~~~~~~~L~~-~pg~~l~~~~~--~-~~~v~f~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~L~~~g~~~~~~~  396 (448)
                      ++..++++++++.|++ +|++++. .++  . .+++.|.+..  ..               ..++.+.|.++| +.+..+
T Consensus       258 ~~~~~l~~~l~~~l~~~~~~~~~~-~~~~~~~~~~~~~~~~~--~~---------------~~~~~~~l~~~g-I~v~~g  318 (379)
T TIGR03402       258 TRVRALRDRLEAGLLARIPDARLN-GDPTKRLPNTVNISFEY--IE---------------GEAILLLLDMEG-ICASSG  318 (379)
T ss_pred             HHHHHHHHHHHHHHHhhCCCEEEe-CCCccCCCCEEEEEecC--CC---------------HHHHHHhhccCC-EEEEch
Confidence            9999999999999996 9999987 433  2 2466666531  21               136778887888 555433


Q ss_pred             ecC--------------Cc---ccccEEEEEecCCCCCCHHHHHHHHHHHHHHHHHhH
Q psy14299        397 PLQ--------------HR---NLHNFFRLVTTCHPASSRQDMDYAIDQIELRGAEVD  437 (448)
Q Consensus       397 ~~~--------------g~---~~~~~lRis~~~~~~~t~edid~l~~al~~~~~~~~  437 (448)
                      ...              |.   ..++.+|+|+  |++||++|||+++++|+++.+++.
T Consensus       319 ~~c~~~~~~~~~~~~~lg~~~~~~~~~vR~S~--~~~~t~~di~~~~~~l~~~~~~~~  374 (379)
T TIGR03402       319 SACTSGSLEPSHVLRAMGVPHTAAHGSIRFSL--SRYNTEEDIDYVLEVLPPIIARLR  374 (379)
T ss_pred             hhcCCCCCCcCHHHHHcCCChhhcCceEEEEc--CCCCCHHHHHHHHHHHHHHHHHHH
Confidence            210              00   0136899999  899999999999999999887754

Members of this protein family are NifS, one of several related families of cysteine desulfurase involved in iron-sulfur (FeS) cluster biosynthesis. NifS is part of the NIF system, usually associated with other nif genes involved in nitrogenase expression and nitrogen fixation. The protein family is given a fairly broad interpretation here. It includes a clade nearly always found in extended nitrogen fixation genomic regions, plus a second clade more closely related to the first than to IscS and also part of NifS-like/NifU-like systems. This model does not extend to a more distantly clade found in the epsilon proteobacteria such as Helicobacter pylori, also named NifS in the literature, built instead in TIGR03403.

>TIGR01979 sufS cysteine desulfurases, SufS subfamily

Probab=99.97  E-value=1.1e-27  Score=245.70  Aligned_cols=303  Identities=17%  Similarity=0.169  Sum_probs=216.1

Q ss_pred             cEEEeCcHHHHHHHHHHHHHHhcCCcccccCCCCCCCeEEEecCCCchHHH----HHHHHhCCCCCcEEEEecCCCCCcC
Q psy14299          4 KPFLLPGGSISNMYSICLARYRLDPDTKRKGLSHLPPLCMFTSEDSHYSML----KAAHWLGIGMDNVIRVKTNERGQMI   79 (448)
Q Consensus         4 ~g~~t~ggT~an~~al~~a~~~~~~~~~~~G~~~~~~~~Vl~~~~~H~s~~----~~~~~~g~~~~~v~~v~~~~~g~id   79 (448)
                      .++||+|+|+++..++.+......          .+++.|++++.+|+|..    ..++..|.   +++.++.++++.+|
T Consensus        82 ~v~~~~g~t~~l~~~~~~~~~~~~----------~~g~~vl~~~~~~~s~~~~~~~~~~~~g~---~~~~v~~~~~~~~~  148 (403)
T TIGR01979        82 EIVFTRGTTESINLVAYSWGDSNL----------KAGDEIVISEMEHHANIVPWQLLAERTGA---TLKFIPLDDDGTLD  148 (403)
T ss_pred             eEEEeCCHHHHHHHHHHHhhhhcC----------CCCCEEEECcchhhHHHHHHHHHHHhcCc---EEEEEecCCCCCCC
Confidence            589999999997766654422110          25678999999999854    45556677   78999998889999


Q ss_pred             HHHHHHHHHHhhhcCCCcEEEEEeccCCccccccCHHHHHHHHHHcCCEEEEecccccccccccchhhhhcCCCCccEEE
Q psy14299         80 CSFLEQTIQTSLAEKKIPLFVNATAGTTVLGAFDPLDEIATVCEKYDLWMHVDACWGGSLIFSEKYSFVLKGINRANSVS  159 (448)
Q Consensus        80 ~e~Le~~l~~~~~~~~~~~lVv~~~~~t~tG~~~~l~~I~~ia~~~g~~l~VD~A~~~~~~~~~~~~~~~~~~~~aD~~~  159 (448)
                      ++++++.+.+      ++++|++++++|++|.+.|+++|+++||+||++++||++|+.+..+.+.     ... .+|+++
T Consensus       149 ~~~l~~~i~~------~~~lv~~~~~~~~tG~~~~~~~i~~~~~~~~~~~ivD~a~~~g~~~~~~-----~~~-~~d~~~  216 (403)
T TIGR01979       149 LDDLEKLLTE------KTKLVAITHVSNVLGTVNPVEEIAKLAHQVGAKVLVDGAQAVPHMPVDV-----QAL-DCDFYV  216 (403)
T ss_pred             HHHHHHHhcc------CCeEEEEEcccccccccCCHHHHHHHHHHcCCEEEEEchhhcCccccCc-----ccc-CCCEEE
Confidence            9999999864      5889999999999999999999999999999999999999988765432     112 479999


Q ss_pred             ECCccccCCCCceEEEEEeccchhhhhccCCcccccccCcccccccCCCCCcccCCCCchhHHHHHHHHHhChHHHHHHH
Q psy14299        160 WNPHKMLGAPLQCSILLIKEKGLLHQANATAATYLFQQDKFYDVSFDTGDKSVQCGRKVDAFKLWLMWKARGNLGFRHFV  239 (448)
Q Consensus       160 ~s~hK~l~~P~g~G~l~vr~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~g~~~~i  239 (448)
                      +++||++ +|.|+|+++++++ .....    .++............+..        .                      
T Consensus       217 ~s~~K~~-gp~G~g~l~~~~~-~~~~~----~~~~~g~~~~~~~~~~~~--------~----------------------  260 (403)
T TIGR01979       217 FSGHKMY-GPTGIGVLYGKEE-LLEQM----PPFLGGGEMIAEVSFEET--------T----------------------  260 (403)
T ss_pred             Eeccccc-CCCCceEEEEchH-HHhcC----CCeecCCCceeecccCcc--------c----------------------
Confidence            9999976 5999999998764 33222    112211100000000000        0                      


Q ss_pred             HHhhhhccCCCccchhhhhhhhhhhhhhhhhhhhhhhccccccccccCCCCCcccccc--chhhHHHHHHHHHhcCccHH
Q psy14299        240 DNAVDCSRGSMTFSTLLCFDLQGLLHQANATAATYLFQQDKFYDVSFDTGDKSVQCGR--KVDAFKLWLMWKARGNLGFR  317 (448)
Q Consensus       240 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~G~~  317 (448)
                                                                    +......|+++.  ...++++..+++++.+.|++
T Consensus       261 ----------------------------------------------~~~~~~~~~~gt~~~~~~~al~~al~~~~~~g~~  294 (403)
T TIGR01979       261 ----------------------------------------------YNEAPHKFEAGTPNIAGVIGLGAAIDYLEAIGLE  294 (403)
T ss_pred             ----------------------------------------------cCCChhhcCCCCccHHHHHHHHHHHHHHHHhCHH
Confidence                                                          000011122211  44567778888888888999


Q ss_pred             HHHHHHHHHHHHHHHHhhcCCCeEEeccCC----ceeeEEEEeeccCCCccccchhhhhhhhhhhHHHHHHHHhCCcEEE
Q psy14299        318 HFVDNAVDCSRYFLSQISQRPGFRLVIPEF----QCTNICFWFIPVSLRDKVEDETWWSTLSKVAPRIKEKLVLGGTLMI  393 (448)
Q Consensus       318 ~~~~~~~~l~~~~~~~L~~~pg~~l~~~~~----~~~~v~f~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~L~~~g~~~~  393 (448)
                      ++.++..++++++.+.|+++||++++ .++    +.++++|.+..  ..               ..++.+.|.++| +.+
T Consensus       295 ~~~~~~~~l~~~l~~~l~~~~g~~~~-~~~~~~~~~~~v~~~~~~--~~---------------~~~~~~~L~~~g-I~v  355 (403)
T TIGR01979       295 NIEAHEHELTAYALERLGEIPGLRIY-GPRDAEDRGGIISFNVEG--VH---------------PHDVGTILDEEG-IAV  355 (403)
T ss_pred             HHHHHHHHHHHHHHHHHhcCCCEEEe-CCCCccccCceEEEEeCC--cC---------------HHHHHHHHhhCC-EEE
Confidence            99999999999999999999999998 432    36777876521  21               126778888888 444


Q ss_pred             Eeee--------cCCcccccEEEEEecCCCCCCHHHHHHHHHHHHHHHHHh
Q psy14299        394 GYQP--------LQHRNLHNFFRLVTTCHPASSRQDMDYAIDQIELRGAEV  436 (448)
Q Consensus       394 ~~~~--------~~g~~~~~~lRis~~~~~~~t~edid~l~~al~~~~~~~  436 (448)
                      ..+.        ..+  .++++|+|+  |++||++|+++|+++|+++.+.+
T Consensus       356 ~~g~~~~~~~~~~~~--~~~~iRiS~--~~~~t~~di~~l~~~l~~~~~~~  402 (403)
T TIGR01979       356 RSGHHCAQPLMRRFG--VPATCRASF--YIYNTEEDIDALVEALKKVRKFF  402 (403)
T ss_pred             cchhhhhHHHHHHhC--CCCEEEEEe--ccCCCHHHHHHHHHHHHHHHHHh
Confidence            4321        111  136899999  79999999999999999987765

This model represents a subfamily of NifS-related cysteine desulfurases involved in FeS cluster formation needed for nitrogen fixation among other vital functions. Many cysteine desulfurases are also active as selenocysteine lyase and/or cysteine sulfinate desulfinase. This subfamily is associated with the six-gene SUF system described in E. coli and Erwinia as an FeS cluster formation system during oxidative stress. The active site Cys is this subfamily resembles GHHC with one or both His conserved.

>PLN02855 Bifunctional selenocysteine lyase/cysteine desulfurase

Probab=99.96  E-value=2.2e-27  Score=245.13  Aligned_cols=305  Identities=16%  Similarity=0.123  Sum_probs=215.4

Q ss_pred             cEEEeCcHHHHHHHHHHHHH-HhcCCcccccCCCCCCCeEEEecCCCchHHHH----HHHHhCCCCCcEEEEecCCCCCc
Q psy14299          4 KPFLLPGGSISNMYSICLAR-YRLDPDTKRKGLSHLPPLCMFTSEDSHYSMLK----AAHWLGIGMDNVIRVKTNERGQM   78 (448)
Q Consensus         4 ~g~~t~ggT~an~~al~~a~-~~~~~~~~~~G~~~~~~~~Vl~~~~~H~s~~~----~~~~~g~~~~~v~~v~~~~~g~i   78 (448)
                      .++||+|+|+++..++.... ...           .+++.|+++..+|++...    .++..|.   +++.++.++++.+
T Consensus        96 ~v~~t~g~t~al~~i~~~~~~~~~-----------~~gd~vl~~~~~~~s~~~~~~~~a~~~g~---~v~~v~~~~~~~~  161 (424)
T PLN02855         96 EIVFTRNATEAINLVAYTWGLANL-----------KPGDEVILSVAEHHSNIVPWQLVAQKTGA---VLKFVGLTPDEVL  161 (424)
T ss_pred             EEEEeCCHHHHHHHHHHHhhhhcC-----------CCcCEEEECCCccHHHHHHHHHHHHHcCC---EEEEEecCCCCCc
Confidence            58999999999766654321 111           256789999999987543    3455576   7889998888889


Q ss_pred             CHHHHHHHHHHhhhcCCCcEEEEEeccCCccccccCHHHHHHHHHHcCCEEEEecccccccccccchhhhhcCCCCccEE
Q psy14299         79 ICSFLEQTIQTSLAEKKIPLFVNATAGTTVLGAFDPLDEIATVCEKYDLWMHVDACWGGSLIFSEKYSFVLKGINRANSV  158 (448)
Q Consensus        79 d~e~Le~~l~~~~~~~~~~~lVv~~~~~t~tG~~~~l~~I~~ia~~~g~~l~VD~A~~~~~~~~~~~~~~~~~~~~aD~~  158 (448)
                      |++++++.+++      ++++|++++++|++|.+.|+++|+++||++|++++||++|+.+..+++.     ... .+|++
T Consensus       162 ~~~~l~~~i~~------~t~lv~i~~~~n~tG~~~~~~~I~~l~~~~g~~vivD~a~~~g~~~~~~-----~~~-~~d~~  229 (424)
T PLN02855        162 DVEQLKELLSE------KTKLVATHHVSNVLGSILPVEDIVHWAHAVGAKVLVDACQSVPHMPVDV-----QTL-GADFL  229 (424)
T ss_pred             CHHHHHHHhcc------CceEEEEeCccccccccCCHHHHHHHHHHcCCEEEEEhhhhcCCcCCCc-----hhc-CCCEE
Confidence            99999999964      5889999999999999999999999999999999999999887765442     122 37999


Q ss_pred             EECCccccCCCCceEEEEEeccchhhhhccCCcccccccCcccccccCCCCCcccCCCCchhHHHHHHHHHhChHHHHHH
Q psy14299        159 SWNPHKMLGAPLQCSILLIKEKGLLHQANATAATYLFQQDKFYDVSFDTGDKSVQCGRKVDAFKLWLMWKARGNLGFRHF  238 (448)
Q Consensus       159 ~~s~hK~l~~P~g~G~l~vr~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~g~~~~  238 (448)
                      ++++|| +++|.|+|+++++++ .+...    .+++...........+...+ ....                       
T Consensus       230 ~~s~~K-~~gp~G~G~l~~~~~-~~~~~----~p~~~g~~~~~~~~~~~~~~-~~~~-----------------------  279 (424)
T PLN02855        230 VASSHK-MCGPTGIGFLWGKSD-LLESM----PPFLGGGEMISDVFLDHSTY-APPP-----------------------  279 (424)
T ss_pred             Eeeccc-ccCCCccEEEEEchh-hhhcC----CCEecCCCceeeeecCcccc-CCCh-----------------------
Confidence            999999 567999999999765 33322    12221111000000000000 0000                       


Q ss_pred             HHHhhhhccCCCccchhhhhhhhhhhhhhhhhhhhhhhccccccccccCCCCCcccc--ccchhhHHHHHHHHHhcCccH
Q psy14299        239 VDNAVDCSRGSMTFSTLLCFDLQGLLHQANATAATYLFQQDKFYDVSFDTGDKSVQC--GRKVDAFKLWLMWKARGNLGF  316 (448)
Q Consensus       239 i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~G~  316 (448)
                                                                          ..|+.  .+...++++..+++++.++|+
T Consensus       280 ----------------------------------------------------~r~e~GT~~~~~~~~l~~al~~~~~~g~  307 (424)
T PLN02855        280 ----------------------------------------------------SRFEAGTPAIGEAIGLGAAIDYLSEIGM  307 (424)
T ss_pred             ----------------------------------------------------hhccCCChHHHHHHHHHHHHHHHHHhCH
Confidence                                                                01112  124557778888898888999


Q ss_pred             HHHHHHHHHHHHHHHHHhhcCCCeEEeccC-----CceeeEEEEeeccCCCccccchhhhhhhhhhhHHHHHHHHhC-Cc
Q psy14299        317 RHFVDNAVDCSRYFLSQISQRPGFRLVIPE-----FQCTNICFWFIPVSLRDKVEDETWWSTLSKVAPRIKEKLVLG-GT  390 (448)
Q Consensus       317 ~~~~~~~~~l~~~~~~~L~~~pg~~l~~~~-----~~~~~v~f~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~L~~~-g~  390 (448)
                      +++.++..++++++++.|+++||++++.+.     .+.++++|.+.  +..               ..++.+.|.++ | 
T Consensus       308 ~~i~~~~~~l~~~l~~~L~~~~g~~i~~~~~~~~~~r~~~v~~~~~--~~~---------------~~~v~~~L~~~~g-  369 (424)
T PLN02855        308 DRIHEYEVELGTYLYEKLSSVPGVRIYGPKPSEGVGRAALCAFNVE--GIH---------------PTDLSTFLDQQHG-  369 (424)
T ss_pred             HHHHHHHHHHHHHHHHHHhcCCCEEEeCCCcccccCcccEEEEEEC--CcC---------------HHHHHHHhcccCC-
Confidence            999999999999999999999999998321     23467777642  221               13678888877 7 


Q ss_pred             EEEEeeecC------CcccccEEEEEecCCCCCCHHHHHHHHHHHHHHHHHh
Q psy14299        391 LMIGYQPLQ------HRNLHNFFRLVTTCHPASSRQDMDYAIDQIELRGAEV  436 (448)
Q Consensus       391 ~~~~~~~~~------g~~~~~~lRis~~~~~~~t~edid~l~~al~~~~~~~  436 (448)
                      +.+..+...      ....++++|+|+  |+|||++||++|+++|+++.+.+
T Consensus       370 I~v~~g~~c~~~~~~~~g~~~~iRiS~--~~ynt~~di~~l~~~l~~~~~~~  419 (424)
T PLN02855        370 VAIRSGHHCAQPLHRYLGVNASARASL--YFYNTKEEVDAFIHALKDTIAFF  419 (424)
T ss_pred             EEEechhhhhHHHHHHhCCCCeEEEEe--ccCCCHHHHHHHHHHHHHHHHHH
Confidence            555432210      011136899999  89999999999999999998774

>PF00266 Aminotran_5: Aminotransferase class-V; InterPro: IPR000192 Aminotransferases share certain mechanistic features with other pyridoxal- phosphate dependent enzymes, such as the covalent binding of the pyridoxal- phosphate group to a lysine residue

Probab=99.96  E-value=6.4e-28  Score=244.76  Aligned_cols=295  Identities=15%  Similarity=0.177  Sum_probs=213.2

Q ss_pred             ccEEEeCcHHHHHHHHHHHHHHhcCCcccccCCCCCCCeEEEecCCCchHHHHHH----HHhCCCCCcEEEEecCCCCCc
Q psy14299          3 LKPFLLPGGSISNMYSICLARYRLDPDTKRKGLSHLPPLCMFTSEDSHYSMLKAA----HWLGIGMDNVIRVKTNERGQM   78 (448)
Q Consensus         3 ~~g~~t~ggT~an~~al~~a~~~~~~~~~~~G~~~~~~~~Vl~~~~~H~s~~~~~----~~~g~~~~~v~~v~~~~~g~i   78 (448)
                      ...+|++|+|+++..++.......           .+++.|++...+|++...++    +..|+   +++.++.+.++.+
T Consensus        62 ~~v~~~~~~t~a~~~~~~~l~~~~-----------~~g~~vl~~~~~~~s~~~~~~~~~~~~g~---~v~~i~~~~~~~~  127 (371)
T PF00266_consen   62 EEVVFTSNGTEALNAVASSLLNPL-----------KPGDEVLVTSNEHPSNRYPWEEIAKRKGA---EVRVIPADPGGSL  127 (371)
T ss_dssp             EEEEEESSHHHHHHHHHHHHHHHG-----------TTTCEEEEEESSHHHHHHHHHHHHHHTTE---EEEEEEEGTTSSC
T ss_pred             cccccccccchhhhhhhhcccccc-----------ccccccccccccccccccccccccccchh---hhccccccccchh
Confidence            357899999999888777764422           25678999999999987444    34566   7999999889999


Q ss_pred             CHHHHHHHHHHhhhcCCCcEEEEEeccCCccccccCHHHHHHHHHHcCCEEEEecccccccccccchhhhhcCCCCccEE
Q psy14299         79 ICSFLEQTIQTSLAEKKIPLFVNATAGTTVLGAFDPLDEIATVCEKYDLWMHVDACWGGSLIFSEKYSFVLKGINRANSV  158 (448)
Q Consensus        79 d~e~Le~~l~~~~~~~~~~~lVv~~~~~t~tG~~~~l~~I~~ia~~~g~~l~VD~A~~~~~~~~~~~~~~~~~~~~aD~~  158 (448)
                      |+++++++|.+      ++++|++++.+|.+|.+.|+++|+++||++|++++||++|+++..+++..     .+ .+|++
T Consensus       128 ~~~~~~~~l~~------~~~lv~~~~~~~~tG~~~pi~~I~~~~~~~~~~~~vD~~~~~g~~~id~~-----~~-~~D~~  195 (371)
T PF00266_consen  128 DLEDLEEALNP------DTRLVSISHVENSTGVRNPIEEIAKLAHEYGALLVVDAAQSAGCVPIDLD-----EL-GADFL  195 (371)
T ss_dssp             SHHHHHHHHHT------TESEEEEESBETTTTBBSSHHHHHHHHHHTTSEEEEE-TTTTTTSS--TT-----TT-TESEE
T ss_pred             hhhhhhhhhcc------ccceEEeecccccccEEeeeceehhhhhccCCceeEechhcccccccccc-----cc-cccee
Confidence            99999999964      58899999999999999999999999999999999999999999876632     22 58999


Q ss_pred             EECCccccCCCCceEEEEEeccchhhhhccCCcccccccCcccccccCCCCCcccCCCCchhHHHHHHHHHhChHHHHHH
Q psy14299        159 SWNPHKMLGAPLQCSILLIKEKGLLHQANATAATYLFQQDKFYDVSFDTGDKSVQCGRKVDAFKLWLMWKARGNLGFRHF  238 (448)
Q Consensus       159 ~~s~hK~l~~P~g~G~l~vr~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~g~~~~  238 (448)
                      ++++|| +++|.|+|+++++++. .....+...++.....                      .    .....+   +   
T Consensus       196 ~~s~~K-l~gp~G~g~l~v~~~~-~~~~~p~~~~~~~~~~----------------------~----~~~~~~---~---  241 (371)
T PF00266_consen  196 VFSSHK-LGGPPGLGFLYVRPEA-IERLRPAKPGGGYLDF----------------------P----SLQEYG---L---  241 (371)
T ss_dssp             EEESTS-TTSSSTEEEEEEEHHH-HHHHHTSSSSSSTTTH----------------------H----HHHHHC---H---
T ss_pred             eecccc-cCCCCchhhheehhhh-hhcccccccccccccc----------------------c----cchhcc---c---
Confidence            999999 9999999999998863 3333221111110000                      0    000000   0   


Q ss_pred             HHHhhhhccCCCccchhhhhhhhhhhhhhhhhhhhhhhccccccccccCCCCCcccc--ccchhhHHHHHHHHHhcCccH
Q psy14299        239 VDNAVDCSRGSMTFSTLLCFDLQGLLHQANATAATYLFQQDKFYDVSFDTGDKSVQC--GRKVDAFKLWLMWKARGNLGF  316 (448)
Q Consensus       239 i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~G~  316 (448)
                                                                      ......+..  .+.+.++++..+++.+.+.|+
T Consensus       242 ------------------------------------------------~~~~~~~~~GT~~~~~~~~l~~al~~~~~~g~  273 (371)
T PF00266_consen  242 ------------------------------------------------ADDARRFEGGTPNVPAIYALNEALKLLEEIGI  273 (371)
T ss_dssp             ------------------------------------------------HSTTTGSSSSS--HHHHHHHHHHHHHHHHHHH
T ss_pred             ------------------------------------------------ccccccccccceeeehhhhHHHHHhhhhcccc
Confidence                                                            001112222  225567778888998899999


Q ss_pred             HHHHHHHHHHHHHHHHHhhcCCCeEEecc---CCceeeEEEEeeccCCCccccchhhhhhhhhhhHHHHHHHHhCCcEEE
Q psy14299        317 RHFVDNAVDCSRYFLSQISQRPGFRLVIP---EFQCTNICFWFIPVSLRDKVEDETWWSTLSKVAPRIKEKLVLGGTLMI  393 (448)
Q Consensus       317 ~~~~~~~~~l~~~~~~~L~~~pg~~l~~~---~~~~~~v~f~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~L~~~g~~~~  393 (448)
                      +++.++...+++++.+.|.++|+++++.+   ....++++|.+.  +.+               ...+.+.|.++| +.+
T Consensus       274 ~~i~~~~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~i~~~~~~--~~~---------------~~~~~~~L~~~~-I~~  335 (371)
T PF00266_consen  274 ERIRERIRELAEYLREALEELPGIEVLGPDDEPRRPSIVSFNLP--GSD---------------ADDVVKYLEERG-IAV  335 (371)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHTTTEEESSSSCGGBGTTEEEEEET--TSS---------------HHHHHHHHHHHT-EEE
T ss_pred             ccchhhhhhHHHHHHhhhhcCCceeEeeecccccccceEEEeec--CCC---------------HHHHHHHHhhcC-EEE
Confidence            99999999999999999999999998731   224678888763  222               137888898887 555


Q ss_pred             EeeecCC------cccccEEEEEecCCCCCCHHHHHHH
Q psy14299        394 GYQPLQH------RNLHNFFRLVTTCHPASSRQDMDYA  425 (448)
Q Consensus       394 ~~~~~~g------~~~~~~lRis~~~~~~~t~edid~l  425 (448)
                      ..+....      .+.++.+|+|+  |+|||++|||+|
T Consensus       336 ~~G~~~~~~~~~~~~~~~~iRvS~--~~~nt~~dv~~l  371 (371)
T PF00266_consen  336 STGSACAGPSLDILGMGGVIRVSL--HYYNTEEDVDRL  371 (371)
T ss_dssp             EESTTTCHHHHHHHHTTTEEEEE---GTTSSHHHHHHH
T ss_pred             eccCcccHHHHHHhCCCCEEEEec--cCCCCHHHHhhC
Confidence            5432222      00127999999  899999999986

On the basis of sequence similarity, these various enzymes can be grouped [] into subfamilies. This entry represents the class V aminotransferases and the related, though functionally distinct, cysteine desulfurases.; GO: 0008152 metabolic process; PDB: 3FFR_A 1N2T_B 1ELQ_A 1N31_A 1ELU_B 1QZ9_A 1VJO_A 3ISL_B 1BJO_B 1BJN_B ....

>PLN02651 cysteine desulfurase

Probab=99.96  E-value=1.6e-27  Score=241.39  Aligned_cols=281  Identities=14%  Similarity=0.128  Sum_probs=198.6

Q ss_pred             cEEEeCcHHHHHHHHHHHHHHhcCCcccccCCCCCCCeEEEecCCCchHHHHHHHHhCCCCCcEEEEecCCCCCcCHHHH
Q psy14299          4 KPFLLPGGSISNMYSICLARYRLDPDTKRKGLSHLPPLCMFTSEDSHYSMLKAAHWLGIGMDNVIRVKTNERGQMICSFL   83 (448)
Q Consensus         4 ~g~~t~ggT~an~~al~~a~~~~~~~~~~~G~~~~~~~~Vl~~~~~H~s~~~~~~~~g~~~~~v~~v~~~~~g~id~e~L   83 (448)
                      .++||+|+|+++.+++..+.....          .+++.|+++..+|+++...+..+.....+++.++.++++.+|++++
T Consensus        62 ~v~~t~~~t~a~~~~l~~~~~~~~----------~~g~~vl~~~~~h~s~~~~~~~~~~~g~~v~~v~~~~~~~~d~~~l  131 (364)
T PLN02651         62 EIIFTSGATESNNLAIKGVMHFYK----------DKKKHVITTQTEHKCVLDSCRHLQQEGFEVTYLPVKSDGLVDLDEL  131 (364)
T ss_pred             eEEEeCCHHHHHHHHHHHHHHhcc----------CCCCEEEEcccccHHHHHHHHHHHhcCCEEEEEccCCCCcCCHHHH
Confidence            579999999999988876644211          2566799999999998777654322122788999888899999999


Q ss_pred             HHHHHHhhhcCCCcEEEEEeccCCccccccCHHHHHHHHHHcCCEEEEecccccccccccchhhhhcCCCCccEEEECCc
Q psy14299         84 EQTIQTSLAEKKIPLFVNATAGTTVLGAFDPLDEIATVCEKYDLWMHVDACWGGSLIFSEKYSFVLKGINRANSVSWNPH  163 (448)
Q Consensus        84 e~~l~~~~~~~~~~~lVv~~~~~t~tG~~~~l~~I~~ia~~~g~~l~VD~A~~~~~~~~~~~~~~~~~~~~aD~~~~s~h  163 (448)
                      ++++++      ++++|++++++|++|.+.|+++|+++||++|+++|||++|+++..+++.     ..+ ++|++++++|
T Consensus       132 ~~~i~~------~t~lv~v~~~~n~tG~~~~l~~I~~~~~~~g~~~~vD~a~~~g~~~~~~-----~~~-~~D~~~~s~h  199 (364)
T PLN02651        132 AAAIRP------DTALVSVMAVNNEIGVIQPVEEIGELCREKKVLFHTDAAQAVGKIPVDV-----DDL-GVDLMSISGH  199 (364)
T ss_pred             HHhcCC------CcEEEEEECCCCCceecccHHHHHHHHHHcCCEEEEEcchhhCCcccCc-----ccC-CCCEEEechh
Confidence            999964      4789999999999999999999999999999999999999999886653     222 4799999999


Q ss_pred             cccCCCCceEEEEEeccchhhhhccCCcccccccCcccccccCCCCCcccCCCCchhHHHHHHHHHhChHHHHHHHHHhh
Q psy14299        164 KMLGAPLQCSILLIKEKGLLHQANATAATYLFQQDKFYDVSFDTGDKSVQCGRKVDAFKLWLMWKARGNLGFRHFVDNAV  243 (448)
Q Consensus       164 K~l~~P~g~G~l~vr~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~g~~~~i~~~~  243 (448)
                      || ++|.|+|+++++++.. ...   .+.+.. ...         ...++.                |            
T Consensus       200 K~-~gp~G~g~l~v~~~~~-~~l---~p~~~g-~~~---------~~~~~~----------------G------------  236 (364)
T PLN02651        200 KI-YGPKGVGALYVRRRPR-VRL---EPLMSG-GGQ---------ERGRRS----------------G------------  236 (364)
T ss_pred             hh-CCCCceEEEEEcCCCC-CCC---CccccC-CCc---------cCCccC----------------C------------
Confidence            98 7899999999987642 211   111111 000         000000                0            


Q ss_pred             hhccCCCccchhhhhhhhhhhhhhhhhhhhhhhccccccccccCCCCCccccccchhhHHHHHHHHHhcCccHHHHHHHH
Q psy14299        244 DCSRGSMTFSTLLCFDLQGLLHQANATAATYLFQQDKFYDVSFDTGDKSVQCGRKVDAFKLWLMWKARGNLGFRHFVDNA  323 (448)
Q Consensus       244 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~  323 (448)
                                                                         -.+...++++..+++++..+ .+++.++.
T Consensus       237 ---------------------------------------------------T~~~~~~~~l~~al~~~~~~-~~~i~~~~  264 (364)
T PLN02651        237 ---------------------------------------------------TENTPLVVGLGAACELAMKE-MDYDEKHM  264 (364)
T ss_pred             ---------------------------------------------------CccHHHHHHHHHHHHHHHHh-HHHHHHHH
Confidence                                                               01133455566667766654 48899999


Q ss_pred             HHHHHHHHHHhhc-CCCeEEecc-CCc---eeeEEEEeeccCCCccccchhhhhhhhhhhHHHHHHHHhCCcEEEEeeec
Q psy14299        324 VDCSRYFLSQISQ-RPGFRLVIP-EFQ---CTNICFWFIPVSLRDKVEDETWWSTLSKVAPRIKEKLVLGGTLMIGYQPL  398 (448)
Q Consensus       324 ~~l~~~~~~~L~~-~pg~~l~~~-~~~---~~~v~f~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~L~~~g~~~~~~~~~  398 (448)
                      .++++++.+.|++ +||++++++ ++.   .++++|.+.  +++               ..++.+.|.+   +.+..+..
T Consensus       265 ~~l~~~l~~~l~~~~~~~~i~~~~~~~~~~~~i~~~~~~--~~~---------------~~~~~~~L~~---i~v~~g~~  324 (364)
T PLN02651        265 KALRERLLNGLRAKLGGVRVNGPRDPEKRYPGTLNLSFA--YVE---------------GESLLMGLKE---VAVSSGSA  324 (364)
T ss_pred             HHHHHHHHHHHHhhCCCEEEECCCCcccCcCCEEEEEeC--CCC---------------HHHHHHHhCC---EEEEchhh
Confidence            9999999999986 789999832 122   357777652  332               1256667743   44432211


Q ss_pred             ------------C--Ccc---cccEEEEEecCCCCCCHHHHH
Q psy14299        399 ------------Q--HRN---LHNFFRLVTTCHPASSRQDMD  423 (448)
Q Consensus       399 ------------~--g~~---~~~~lRis~~~~~~~t~edid  423 (448)
                                  .  |..   ..+.+|+|+  ++|||++|||
T Consensus       325 c~~~~~~~~~~~~~~g~~~~~~~~~vR~S~--~~~~t~~did  364 (364)
T PLN02651        325 CTSASLEPSYVLRALGVPEEMAHGSLRLGV--GRFTTEEEVD  364 (364)
T ss_pred             cCCCCCCcCHHHHHcCCChHHhCceEEEEc--CCCCCHHHcC
Confidence                        0  110   137999999  8999999986

>TIGR01814 kynureninase kynureninase

Probab=99.96  E-value=1.1e-26  Score=238.58  Aligned_cols=300  Identities=10%  Similarity=0.052  Sum_probs=209.3

Q ss_pred             cEEEeCcHHHHHHHHHHHHHHhcCCcccccCCCCCCCeEEEecCCCchHHHHH----HHHhCCCCCcE----EEEecCCC
Q psy14299          4 KPFLLPGGSISNMYSICLARYRLDPDTKRKGLSHLPPLCMFTSEDSHYSMLKA----AHWLGIGMDNV----IRVKTNER   75 (448)
Q Consensus         4 ~g~~t~ggT~an~~al~~a~~~~~~~~~~~G~~~~~~~~Vl~~~~~H~s~~~~----~~~~g~~~~~v----~~v~~~~~   75 (448)
                      ..+||+|+|+++..++.....+        |   .++..|+++..+|.|+...    ++..|+   ++    +.++.+++
T Consensus        88 ~v~~~~~~t~~l~~~~~~~~~~--------~---~~~~~i~~~~~~~~s~~~~~~~~~~~~g~---~~~~~~~~~~~~~~  153 (406)
T TIGR01814        88 EVVVMNTLTINLHLLLASFYKP--------T---PKRYKILLEAKAFPSDHYAIESQLQLHGL---TVEESMVQIEPREE  153 (406)
T ss_pred             cEEEeCCchHHHHHHHHHhcCC--------c---CCccEEEecCCCCChHHHHHHHHHHhcCC---CcccceEEeccCCC
Confidence            4799999999977766553221        0   1234688899999996554    345566   44    56776667


Q ss_pred             CCcCHHHHHHHHHHhhhcCCCcEEEEEeccCCccccccCHHHHHHHHHHcCCEEEEecccccccccccchhhhhcCCCCc
Q psy14299         76 GQMICSFLEQTIQTSLAEKKIPLFVNATAGTTVLGAFDPLDEIATVCEKYDLWMHVDACWGGSLIFSEKYSFVLKGINRA  155 (448)
Q Consensus        76 g~id~e~Le~~l~~~~~~~~~~~lVv~~~~~t~tG~~~~l~~I~~ia~~~g~~l~VD~A~~~~~~~~~~~~~~~~~~~~a  155 (448)
                      +.+|++++++.+++.   +.++++|+++++++.+|.+.|+++|+++||++|++++||++|++|..+++..     .. ++
T Consensus       154 g~~~~~~l~~~~~~~---~~~t~lv~~~~v~~~tG~~~~~~~i~~~~~~~g~~~~vD~aq~~G~~~id~~-----~~-gv  224 (406)
T TIGR01814       154 ETLRLEDILDTIEKN---GDDIAVILLSGVQYYTGQLFDMAAITRAAHAKGALVGFDLAHAVGNVPLDLH-----DW-GV  224 (406)
T ss_pred             CccCHHHHHHHHHhc---CCCeEEEEEeccccccceecCHHHHHHHHHHcCCEEEEEcccccCCcccccc-----cC-CC
Confidence            889999999998642   2468899999999999999999999999999999999999999999876532     22 58


Q ss_pred             cEEEECCccccCCCCceEEEEEeccchhhhhccCCcccccccCcccccccCCCCCcccCCCCchhHHHHHHHHHhChHHH
Q psy14299        156 NSVSWNPHKMLGAPLQCSILLIKEKGLLHQANATAATYLFQQDKFYDVSFDTGDKSVQCGRKVDAFKLWLMWKARGNLGF  235 (448)
Q Consensus       156 D~~~~s~hK~l~~P~g~G~l~vr~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~g~  235 (448)
                      |++++++||||++|+| |+++++++... ...+...+|.....   ...++.. ...                       
T Consensus       225 D~~~~s~hK~l~g~pG-~~l~v~~~~~~-~~~p~~~g~~~~~~---~~~~~~~-~~~-----------------------  275 (406)
T TIGR01814       225 DFACWCTYKYLNAGPG-AGAFVHEKHAH-TERPRLAGWWGHAR---PTRFKMD-NTL-----------------------  275 (406)
T ss_pred             CEEEEcCccccCCCCC-eEEEEehhhhh-hcCCCCCcccCCCC---ccccccc-ccc-----------------------
Confidence            9999999999987778 76777665321 11111122211100   0000000 000                       


Q ss_pred             HHHHHHhhhhccCCCccchhhhhhhhhhhhhhhhhhhhhhhccccccccccCCCCCcccc--ccchhhHHHHHHHHHhcC
Q psy14299        236 RHFVDNAVDCSRGSMTFSTLLCFDLQGLLHQANATAATYLFQQDKFYDVSFDTGDKSVQC--GRKVDAFKLWLMWKARGN  313 (448)
Q Consensus       236 ~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~  313 (448)
                                                                         ......++.  .+.+.+.++..+++++.+
T Consensus       276 ---------------------------------------------------~~~~~~~~~GT~~~~~~~~l~~al~~~~~  304 (406)
T TIGR01814       276 ---------------------------------------------------GLIPCGFRISNPPILSVAALRGSLDIFDQ  304 (406)
T ss_pred             ---------------------------------------------------CCCccceeeCCccHHHHHHHHHHHHHHHh
Confidence                                                               000001111  225667778889999989


Q ss_pred             ccHHHHHHHHHHHHHHHHHHhhcC----CCeEEeccCC----ceeeEEEEeeccCCCccccchhhhhhhhhhhHHHHHHH
Q psy14299        314 LGFRHFVDNAVDCSRYFLSQISQR----PGFRLVIPEF----QCTNICFWFIPVSLRDKVEDETWWSTLSKVAPRIKEKL  385 (448)
Q Consensus       314 ~G~~~~~~~~~~l~~~~~~~L~~~----pg~~l~~~~~----~~~~v~f~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~L  385 (448)
                      +|++++.++...+++++++.|+++    |+++++ .+.    +.++++|.+.   ..               ...+.+.|
T Consensus       305 ~g~~~i~~~~~~l~~~l~~~l~~~~~~~~~~~i~-~~~~~~~r~~~v~~~~~---~~---------------~~~~~~~L  365 (406)
T TIGR01814       305 AGMEALRKKSLLLTDYLEELIKARCGGPPVLTII-TPRDHAQRGCQLSLTHP---VP---------------GKAVFQAL  365 (406)
T ss_pred             cCHHHHHHHHHHHHHHHHHHHHhhcCCCCceEEe-CCCChhhcCCeEEEEec---CC---------------HHHHHHHH
Confidence            999999999999999999999885    469988 432    3467777542   11               13678888


Q ss_pred             HhCCcEEEEeeecCCcccccEEEEEecCCCCCCHHHHHHHHHHHHHHH
Q psy14299        386 VLGGTLMIGYQPLQHRNLHNFFRLVTTCHPASSRQDMDYAIDQIELRG  433 (448)
Q Consensus       386 ~~~g~~~~~~~~~~g~~~~~~lRis~~~~~~~t~edid~l~~al~~~~  433 (448)
                      .++| +++..   .+.   +.+|+|++ |+|||++|||+++++|+++.
T Consensus       366 ~~~g-i~v~~---~~~---~~iRiS~~-~~~nt~~did~l~~~l~~~~  405 (406)
T TIGR01814       366 IKRG-VIGDK---REP---SVIRVAPV-PLYNTFVDVYDAVNVLEEIL  405 (406)
T ss_pred             HHCC-EEEec---cCC---CeEEEech-hccCCHHHHHHHHHHHHHHh
Confidence            8888 44432   222   68999996 68999999999999998753

This model describes kynureninase, a pyridoxal-phosphate enzyme. Kynurinine is a Trp breakdown product and a precursor for NAD. In Chlamydia psittaci, an obligate intracellular pathogen, kynureninase makes anthranilate, a Trp precursor, from kynurenine. This counters the tryptophan hydrolysis that occurs in the host cell in response to the pathogen.

>TIGR03403 nifS_epsilon cysteine desulfurase, NifS family, epsilon proteobacteria type

Probab=99.96  E-value=7.8e-27  Score=237.76  Aligned_cols=293  Identities=15%  Similarity=0.166  Sum_probs=205.1

Q ss_pred             cEEEeCcHHHHHHHHHHHHHHhcCCcccccCCCCCCCeEEEecCCCchHHHHHHHH---hCCCCCcEEEEecCCCCCcCH
Q psy14299          4 KPFLLPGGSISNMYSICLARYRLDPDTKRKGLSHLPPLCMFTSEDSHYSMLKAAHW---LGIGMDNVIRVKTNERGQMIC   80 (448)
Q Consensus         4 ~g~~t~ggT~an~~al~~a~~~~~~~~~~~G~~~~~~~~Vl~~~~~H~s~~~~~~~---~g~~~~~v~~v~~~~~g~id~   80 (448)
                      ..+||+|+|+++.+++........   .+     .+++.|+++..+|+++...+..   .|.   +++.+|.++++.+|+
T Consensus        62 ~i~~t~g~teal~~~~~~~~~~~~---~~-----~~~~~vi~~~~e~ps~~~~~~~~~~~G~---~v~~v~~~~~g~~d~  130 (382)
T TIGR03403        62 DIIITSCATESNNWVLKGVYFDEI---LK-----GGKNHIITTEVEHPAVRATCAFLESLGV---EVTYLPINEQGTITA  130 (382)
T ss_pred             eEEEeCCHHHHHHHHHHHHHHhhc---cc-----CCCCEEEEcCCccHHHHHHHHHHHHCCC---EEEEEecCCCCCCCH
Confidence            578999999998888765532100   00     1345688899999998877653   455   799999988899999


Q ss_pred             HHHHHHHHHhhhcCCCcEEEEEeccCCccccccCHHHHHHHHHHcCCEEEEecccccccccccchhhhhcCCCCccEEEE
Q psy14299         81 SFLEQTIQTSLAEKKIPLFVNATAGTTVLGAFDPLDEIATVCEKYDLWMHVDACWGGSLIFSEKYSFVLKGINRANSVSW  160 (448)
Q Consensus        81 e~Le~~l~~~~~~~~~~~lVv~~~~~t~tG~~~~l~~I~~ia~~~g~~l~VD~A~~~~~~~~~~~~~~~~~~~~aD~~~~  160 (448)
                      ++|++++++      +++++++++++|++|.+.|+++|.++|+++|+++|+|++++.+..+.+..     . ..+|++++
T Consensus       131 ~~l~~~i~~------~t~lv~~~~~~n~tG~~~~~~~I~~la~~~g~~~ivD~a~~~g~~~~~~~-----~-~~~D~~~~  198 (382)
T TIGR03403       131 EQVREAITE------KTALVSVMWANNETGMIFPIKEIGEICKERGVLFHTDAVQAIGKIPVDVQ-----K-AGVDFLSF  198 (382)
T ss_pred             HHHHHhccc------CCeEEEEEcccCCCccccCHHHHHHHHHHcCCEEEEechhhcCCCccCcc-----c-cCCCEEEE
Confidence            999999864      47899999999999999999999999999999999999999887655422     1 14899999


Q ss_pred             CCccccCCCCceEEEEEeccchhhhhccCCcccccccCcccccccCCCCCcccCCCCchhHHHHHHHHHhChHHHHHHHH
Q psy14299        161 NPHKMLGAPLQCSILLIKEKGLLHQANATAATYLFQQDKFYDVSFDTGDKSVQCGRKVDAFKLWLMWKARGNLGFRHFVD  240 (448)
Q Consensus       161 s~hK~l~~P~g~G~l~vr~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~g~~~~i~  240 (448)
                      ++||| ++|.|+|++++|+...+      .+ .+.....            . ...+            .|         
T Consensus       199 s~~K~-~gp~G~g~l~vr~~~~~------~p-~~~g~~~------------~-~~~~------------~g---------  236 (382)
T TIGR03403       199 SAHKF-HGPKGVGGLYIRKGVEL------TP-LFHGGEH------------M-GGRR------------SG---------  236 (382)
T ss_pred             cchhh-CCCCceEEEEECCCCCC------CC-cccCCCC------------C-CCcc------------cC---------
Confidence            99998 56999999999875311      11 1110000            0 0000            00         


Q ss_pred             HhhhhccCCCccchhhhhhhhhhhhhhhhhhhhhhhccccccccccCCCCCccccccchhhHHHHHHHHHhcCccHHHHH
Q psy14299        241 NAVDCSRGSMTFSTLLCFDLQGLLHQANATAATYLFQQDKFYDVSFDTGDKSVQCGRKVDAFKLWLMWKARGNLGFRHFV  320 (448)
Q Consensus       241 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~  320 (448)
                                                                            ..+.+.++++..+++.... +++.+.
T Consensus       237 ------------------------------------------------------t~~~~~~~al~~al~~~~~-~~~~~~  261 (382)
T TIGR03403       237 ------------------------------------------------------TLNVPYIVAMGEAMRLANE-YLDFEK  261 (382)
T ss_pred             ------------------------------------------------------CcChHHHHHHHHHHHHHHH-hHHHHH
Confidence                                                                  0112223344445554433 477788


Q ss_pred             HHHHHHHHHHHHHhhcCCCeEEeccCC--c-eeeEEEEeeccCCCccccchhhhhhhhhhhHHHHHHHHhCCcEEEEeee
Q psy14299        321 DNAVDCSRYFLSQISQRPGFRLVIPEF--Q-CTNICFWFIPVSLRDKVEDETWWSTLSKVAPRIKEKLVLGGTLMIGYQP  397 (448)
Q Consensus       321 ~~~~~l~~~~~~~L~~~pg~~l~~~~~--~-~~~v~f~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~L~~~g~~~~~~~~  397 (448)
                      ++...+++++.+.|+++|+++++ .+.  + .+++.|.+.  ++.               ...+...|.++| +.+..+.
T Consensus       262 ~~~~~l~~~l~~~L~~~~~~~~~-~~~~~~~~~~~~~~~~--~~~---------------~~~~~~~L~~~g-I~v~~g~  322 (382)
T TIGR03403       262 SHVRRLRDRLEDALLELPDVFVV-GDREHRVPNTILISIK--GVE---------------GEAMLWDLNKAG-IAASTGS  322 (382)
T ss_pred             HHHHHHHHHHHHHHhcCCCEEEE-CCCCCCcCCEEEEEeC--CCC---------------HHHHHHhhccCC-EEEEchh
Confidence            99999999999999999999998 432  2 235566542  222               125667788888 5554221


Q ss_pred             c--------------CCcc---cccEEEEEecCCCCCCHHHHHHHHHHHHHHHHHhH
Q psy14299        398 L--------------QHRN---LHNFFRLVTTCHPASSRQDMDYAIDQIELRGAEVD  437 (448)
Q Consensus       398 ~--------------~g~~---~~~~lRis~~~~~~~t~edid~l~~al~~~~~~~~  437 (448)
                      .              -|..   .++.+|+|+  |++||++|||+++++|+++.+++.
T Consensus       323 ~c~~~~~~~~~v~~~~g~~~~~~~~~iR~s~--~~~~t~~did~~~~~l~~~~~~~~  377 (382)
T TIGR03403       323 ACASEDLEANPVMVAIGADKELAHTAIRLSL--SRFTTEEEIDYTIEVFKKAVQRLR  377 (382)
T ss_pred             ccCCCCCCcCHHHHHcCCChHHhCeeEEEEC--CCCCCHHHHHHHHHHHHHHHHHHH
Confidence            0              0100   126899999  789999999999999999987755

Members of this family are the NifS-like cysteine desulfurase of the epsilon division of the Proteobacteria, similar to the NifS protein of nitrogen-fixing bacteria. Like NifS, and unlike IscS, this protein is found as part of a system of just two proteins, a cysteine desulfurase and a scaffold, for iron-sulfur cluster biosynthesis. This protein is called NifS by Olsen, et al. (PubMed:11123951), so we use this designation.

>cd06453 SufS_like Cysteine desulfurase (SufS)-like

Probab=99.96  E-value=2.2e-26  Score=233.39  Aligned_cols=297  Identities=17%  Similarity=0.187  Sum_probs=209.7

Q ss_pred             cEEEeCcHHHHHHHHHHHHHHhcCCcccccCCCCCCCeEEEecCCCchHHH----HHHHHhCCCCCcEEEEecCCCCCcC
Q psy14299          4 KPFLLPGGSISNMYSICLARYRLDPDTKRKGLSHLPPLCMFTSEDSHYSML----KAAHWLGIGMDNVIRVKTNERGQMI   79 (448)
Q Consensus         4 ~g~~t~ggT~an~~al~~a~~~~~~~~~~~G~~~~~~~~Vl~~~~~H~s~~----~~~~~~g~~~~~v~~v~~~~~g~id   79 (448)
                      .+++|+|+|+++.+++.+.....           .+++.|+++..+|++..    ..++..|.   +++.++.++++.+|
T Consensus        63 ~v~~~~g~t~a~~~~~~~l~~~~-----------~~g~~vl~~~~~~~~~~~~~~~~~~~~g~---~~~~v~~~~~~~~d  128 (373)
T cd06453          63 EIIFTRNTTEAINLVAYGLGRAN-----------KPGDEIVTSVMEHHSNIVPWQQLAERTGA---KLKVVPVDDDGQLD  128 (373)
T ss_pred             eEEEeCCHHHHHHHHHHHhhhcC-----------CCCCEEEECcchhHHHHHHHHHHHhhcCc---EEEEeecCCCCCcC
Confidence            57899999999888776655410           14567899999999854    34456677   79999998889999


Q ss_pred             HHHHHHHHHHhhhcCCCcEEEEEeccCCccccccCHHHHHHHHHHcCCEEEEecccccccccccchhhhhcCCCCccEEE
Q psy14299         80 CSFLEQTIQTSLAEKKIPLFVNATAGTTVLGAFDPLDEIATVCEKYDLWMHVDACWGGSLIFSEKYSFVLKGINRANSVS  159 (448)
Q Consensus        80 ~e~Le~~l~~~~~~~~~~~lVv~~~~~t~tG~~~~l~~I~~ia~~~g~~l~VD~A~~~~~~~~~~~~~~~~~~~~aD~~~  159 (448)
                      ++++++.+.+      ++++|++++++|++|.+.|+++|.++|++||+++|+|++++.+..+.+..     .. .+|+++
T Consensus       129 ~~~l~~~l~~------~~~~v~~~~~~~~tG~~~~~~~i~~~~~~~~~~li~D~a~~~~~~~~~~~-----~~-~~d~~~  196 (373)
T cd06453         129 LEALEKLLTE------RTKLVAVTHVSNVLGTINPVKEIGEIAHEAGVPVLVDGAQSAGHMPVDVQ-----DL-GCDFLA  196 (373)
T ss_pred             HHHHHHHhcC------CceEEEEeCcccccCCcCCHHHHHHHHHHcCCEEEEEhhhhcCceeeecc-----cc-CCCEEE
Confidence            9999999964      47899999999999999999999999999999999999998877644321     11 479999


Q ss_pred             ECCccccCCCCceEEEEEeccchhhhhccCCcccccccCcccccccCCCCCcccCCCCchhHHHHHHHHHhChHHHHHHH
Q psy14299        160 WNPHKMLGAPLQCSILLIKEKGLLHQANATAATYLFQQDKFYDVSFDTGDKSVQCGRKVDAFKLWLMWKARGNLGFRHFV  239 (448)
Q Consensus       160 ~s~hK~l~~P~g~G~l~vr~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~g~~~~i  239 (448)
                      +++|||+++ .|+|+++++++ +.....+    +............+...+.                            
T Consensus       197 ~s~~K~~~~-~g~g~~~~~~~-~~~~~~~----~~~g~~~~~~~~~~~~~~~----------------------------  242 (373)
T cd06453         197 FSGHKMLGP-TGIGVLYGKEE-LLEEMPP----YGGGGEMIEEVSFEETTYA----------------------------  242 (373)
T ss_pred             eccccccCC-CCcEEEEEchH-HhhcCCC----eecCCCccccccccccccC----------------------------
Confidence            999999987 78999888654 3333221    1111000000000000000                            


Q ss_pred             HHhhhhccCCCccchhhhhhhhhhhhhhhhhhhhhhhccccccccccCCCCCcccc--ccchhhHHHHHHHHHhcCccHH
Q psy14299        240 DNAVDCSRGSMTFSTLLCFDLQGLLHQANATAATYLFQQDKFYDVSFDTGDKSVQC--GRKVDAFKLWLMWKARGNLGFR  317 (448)
Q Consensus       240 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~G~~  317 (448)
                                                                      .....+..  .+...+++++.+++++..+|++
T Consensus       243 ------------------------------------------------~~~~~~~~~t~~~~~~~al~~al~~l~~~g~~  274 (373)
T cd06453         243 ------------------------------------------------DLPHKFEAGTPNIAGAIGLGAAIDYLEKIGME  274 (373)
T ss_pred             ------------------------------------------------CCccccCCCCCCHHHHHHHHHHHHHHHHcCHH
Confidence                                                            00001111  2244577778888999999999


Q ss_pred             HHHHHHHHHHHHHHHHhhcCCCeEEeccCC--ceeeEEEEeeccCCCccccchhhhhhhhhhhHHHHHHHHhCCcEEEEe
Q psy14299        318 HFVDNAVDCSRYFLSQISQRPGFRLVIPEF--QCTNICFWFIPVSLRDKVEDETWWSTLSKVAPRIKEKLVLGGTLMIGY  395 (448)
Q Consensus       318 ~~~~~~~~l~~~~~~~L~~~pg~~l~~~~~--~~~~v~f~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~L~~~g~~~~~~  395 (448)
                      ++.++..++++++.+.|+++|+++++ .++  ..++++|.+.  +++               ..++.+.|.++| +++.+
T Consensus       275 ~~~~~~~~~~~~l~~~l~~~~~~~~~-~~~~~~~~~~~~~~~--~~~---------------~~~i~~~l~~~g-i~i~~  335 (373)
T cd06453         275 AIAAHEHELTAYALERLSEIPGVRVY-GDAEDRAGVVSFNLE--GIH---------------PHDVATILDQYG-IAVRA  335 (373)
T ss_pred             HHHHHHHHHHHHHHHHHhcCCCeEEe-CCccccCCeEEEEEC--CcC---------------HHHHHHHHHHCC-EEecc
Confidence            99999999999999999999999987 432  3556666542  221               237888998888 44443


Q ss_pred             eecC------CcccccEEEEEecCCCCCCHHHHHHHHHHH
Q psy14299        396 QPLQ------HRNLHNFFRLVTTCHPASSRQDMDYAIDQI  429 (448)
Q Consensus       396 ~~~~------g~~~~~~lRis~~~~~~~t~edid~l~~al  429 (448)
                      +...      ....++++|+|+  ++++|++|+|+|+++|
T Consensus       336 g~~~~~~~~~~~~~~~~iRis~--~~~~t~~di~~~~~~l  373 (373)
T cd06453         336 GHHCAQPLMRRLGVPGTVRASF--GLYNTEEEIDALVEAL  373 (373)
T ss_pred             CccchhHHHHHhCCCCeEEEEe--cCCCCHHHHHHHHhhC
Confidence            2211      111236899999  7999999999999875

This family belongs to the pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). The major groups in this CD correspond to cysteine desulfurase (SufS) and selenocysteine lyase. SufS catalyzes the removal of elemental sulfur and selenium atoms from L-cysteine, L-cystine, L-selenocysteine, and L-selenocystine to produce L-alanine; and selenocysteine lyase catalyzes the decomposition of L-selenocysteine.

>TIGR02006 IscS cysteine desulfurase IscS

Probab=99.95  E-value=4.7e-26  Score=233.64  Aligned_cols=292  Identities=15%  Similarity=0.191  Sum_probs=200.4

Q ss_pred             cEEEeCcHHHHHHHHHHHHHHhcCCcccccCCCCCCCeEEEecCCCchHHHHHHHHh---CCCCCcEEEEecCCCCCcCH
Q psy14299          4 KPFLLPGGSISNMYSICLARYRLDPDTKRKGLSHLPPLCMFTSEDSHYSMLKAAHWL---GIGMDNVIRVKTNERGQMIC   80 (448)
Q Consensus         4 ~g~~t~ggT~an~~al~~a~~~~~~~~~~~G~~~~~~~~Vl~~~~~H~s~~~~~~~~---g~~~~~v~~v~~~~~g~id~   80 (448)
                      .++||+|+|+++.+++........          .+++.|+++..+|+++...+..+   |+   +++.++.++++.+|+
T Consensus        66 ~v~~~~g~t~a~~~~l~~l~~~~~----------~~g~~Vi~~~~~h~s~~~~~~~~~~~g~---~v~~v~~~~~~~~d~  132 (402)
T TIGR02006        66 EIVFTSGATESNNLAIKGIAHFYK----------SKGNHIITSKTEHKAVLDTCRYLEREGF---EVTYLPPKSNGLIDL  132 (402)
T ss_pred             eEEEeCCHHHHHHHHHHHHHHhhc----------CCCCEEEECCCccHHHHHHHHHHHhcCC---EEEEEccCCCCcCCH
Confidence            489999999998888766543110          25677999999999988877544   55   789999988899999


Q ss_pred             HHHHHHHHHhhhcCCCcEEEEEeccCCccccccCHHHHHHHHHHcCCEEEEecccccccccccchhhhhcCCCCccEEEE
Q psy14299         81 SFLEQTIQTSLAEKKIPLFVNATAGTTVLGAFDPLDEIATVCEKYDLWMHVDACWGGSLIFSEKYSFVLKGINRANSVSW  160 (448)
Q Consensus        81 e~Le~~l~~~~~~~~~~~lVv~~~~~t~tG~~~~l~~I~~ia~~~g~~l~VD~A~~~~~~~~~~~~~~~~~~~~aD~~~~  160 (448)
                      +++++++++      ++++|++++++|++|.+.|+++|.++||++|+++|||++|+.+..+.+..     .. .+|++++
T Consensus       133 ~~l~~~l~~------~~~lv~v~~~~n~tG~~~~~~~I~~l~~~~g~~livD~a~a~g~~~~~~~-----~~-~~D~~~~  200 (402)
T TIGR02006       133 EELKAAIRD------DTILVSIMHVNNEIGVIQDIAAIGEICRERKVFFHVDAAQSVGKIPINVN-----EL-KVDLMSI  200 (402)
T ss_pred             HHHHHhcCC------CCEEEEEECCCcCceecccHHHHHHHHHHcCCEEEEEcchhcCCcccCcc-----cc-CCCEEEE
Confidence            999999854      47899999999999999999999999999999999999999988765432     22 5899999


Q ss_pred             CCccccCCCCceEEEEEeccchhhhhccCCcccccccCcccccccCCCCCcccCCCCchhHHHHHHHHHhChHHHHHHHH
Q psy14299        161 NPHKMLGAPLQCSILLIKEKGLLHQANATAATYLFQQDKFYDVSFDTGDKSVQCGRKVDAFKLWLMWKARGNLGFRHFVD  240 (448)
Q Consensus       161 s~hK~l~~P~g~G~l~vr~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~g~~~~i~  240 (448)
                      ++||++ +|.|+|+++++++.... ..    +.......         ...++.+.                        
T Consensus       201 s~~K~~-gp~G~G~l~~~~~~~~~-~~----~~~~g~~~---------~~~~~~gt------------------------  241 (402)
T TIGR02006       201 SGHKIY-GPKGIGALYVRRKPRVR-LE----ALIHGGGH---------ERGMRSGT------------------------  241 (402)
T ss_pred             ehhhhc-CCCceEEEEEccCCCCC-CC----ceecCCCc---------cCCccCCC------------------------
Confidence            999965 59999999998764321 10    11110000         00000000                        


Q ss_pred             HhhhhccCCCccchhhhhhhhhhhhhhhhhhhhhhhccccccccccCCCCCccccccchhhHHHHHHHHHhcCccHHHHH
Q psy14299        241 NAVDCSRGSMTFSTLLCFDLQGLLHQANATAATYLFQQDKFYDVSFDTGDKSVQCGRKVDAFKLWLMWKARGNLGFRHFV  320 (448)
Q Consensus       241 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~  320 (448)
                                                                             .+...++++..+++++. ++++.+.
T Consensus       242 -------------------------------------------------------~~~~~~~al~~al~~~~-~~~~~~~  265 (402)
T TIGR02006       242 -------------------------------------------------------LPTHQIVGMGEAFRIAK-EEMAQDT  265 (402)
T ss_pred             -------------------------------------------------------ccHHHHHHHHHHHHHHH-HhHHHHH
Confidence                                                                   01222344445555544 3688889


Q ss_pred             HHHHHHHHHHHHHhhcCCCeEEeccC-Cce-e--eEEEEeeccCCCccccchhhhhhhhhhhHHHHHHHH----hCCcEE
Q psy14299        321 DNAVDCSRYFLSQISQRPGFRLVIPE-FQC-T--NICFWFIPVSLRDKVEDETWWSTLSKVAPRIKEKLV----LGGTLM  392 (448)
Q Consensus       321 ~~~~~l~~~~~~~L~~~pg~~l~~~~-~~~-~--~v~f~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~L~----~~g~~~  392 (448)
                      ++...+++++.+.|+++|++++++.. .+. +  +++|..    ...               ..+...|.    +.| .+
T Consensus       266 ~~~~~l~~~l~~~l~~~~~v~~~~~~~~~~p~~~~v~f~~----~~~---------------~~~~~~l~~i~v~~G-~~  325 (402)
T TIGR02006       266 AHVLALRDRLLNGIKSIEEVYLNGDLEHRVPGNLNVSFNY----VEG---------------ESLIMALKDLAVSSG-SA  325 (402)
T ss_pred             HHHHHHHHHHHHHHhcCCCEEEeCCccccCCCeEEEEEeC----cCH---------------HHHHHhcCCEEEech-hh
Confidence            99999999999999999999887311 122 2  344431    110               12333331    112 11


Q ss_pred             EEeeec--------CCc---ccccEEEEEecCCCCCCHHHHHHHHHHHHHHHHHhH
Q psy14299        393 IGYQPL--------QHR---NLHNFFRLVTTCHPASSRQDMDYAIDQIELRGAEVD  437 (448)
Q Consensus       393 ~~~~~~--------~g~---~~~~~lRis~~~~~~~t~edid~l~~al~~~~~~~~  437 (448)
                      +.+...        .|.   ...+++|+|+  +++||++|||+++++|+++.+.+.
T Consensus       326 c~~~~~~~~~~l~~lg~~~~~~~~~vR~S~--~~~~t~edid~l~~~l~~~~~~~~  379 (402)
T TIGR02006       326 CTSASLEPSYVLRALGINDELAHSSIRFTI--GRFTTEEEIDYAVKLVKSAIDKLR  379 (402)
T ss_pred             cCCCCCCccHHHHHcCCChhhcCceEEEEe--cCCCCHHHHHHHHHHHHHHHHHHH
Confidence            211100        000   0137899999  899999999999999999987764

This model represents IscS, one of several cysteine desulfurases from a larger protein family designated (misleadingly, in this case) class V aminotransferases. IscS is one of at least 6 enzymes characteristic of the IscSUA-hscAB-fsx system of iron-sulfur cluster assembly. Scoring almost as well as proteobacterial sequences included in the model are mitochondrial cysteine desulfurases, apparently from an analogous system in eukaryotes. The sulfur, taken from cysteine, may be used in other systems as well, such as tRNA base modification and biosynthesis of other cofactors.

>cd06451 AGAT_like Alanine-glyoxylate aminotransferase (AGAT) family

Probab=99.95  E-value=1.2e-25  Score=226.63  Aligned_cols=294  Identities=14%  Similarity=0.098  Sum_probs=209.3

Q ss_pred             EEEeCcHHHHHHHHHHHHHHhcCCcccccCCCCCCCeEEEecCCCchH--HHHHHHHhCCCCCcEEEEecCCCCCcCHHH
Q psy14299          5 PFLLPGGSISNMYSICLARYRLDPDTKRKGLSHLPPLCMFTSEDSHYS--MLKAAHWLGIGMDNVIRVKTNERGQMICSF   82 (448)
Q Consensus         5 g~~t~ggT~an~~al~~a~~~~~~~~~~~G~~~~~~~~Vl~~~~~H~s--~~~~~~~~g~~~~~v~~v~~~~~g~id~e~   82 (448)
                      +++|+|||+++..++.+...              +++.|+++...|++  +...++..|.   +++.+|.++++.+|+++
T Consensus        53 ~~~~~~~t~al~~~~~~~~~--------------~g~~vl~~~~~~~~~~~~~~~~~~g~---~~~~v~~~~~~~~~~~~  115 (356)
T cd06451          53 FLLSGSGTGAMEAALSNLLE--------------PGDKVLVGVNGVFGDRWADMAERYGA---DVDVVEKPWGEAVSPEE  115 (356)
T ss_pred             EEEecCcHHHHHHHHHHhCC--------------CCCEEEEecCCchhHHHHHHHHHhCC---CeEEeecCCCCCCCHHH
Confidence            67899999998888766532              55678888888887  4577788888   78899988888999999


Q ss_pred             HHHHHHHhhhcCCCcEEEEEeccCCccccccCHHHHHHHHHHcCCEEEEecccccccccccchhhhhcCCCCccEEEECC
Q psy14299         83 LEQTIQTSLAEKKIPLFVNATAGTTVLGAFDPLDEIATVCEKYDLWMHVDACWGGSLIFSEKYSFVLKGINRANSVSWNP  162 (448)
Q Consensus        83 Le~~l~~~~~~~~~~~lVv~~~~~t~tG~~~~l~~I~~ia~~~g~~l~VD~A~~~~~~~~~~~~~~~~~~~~aD~~~~s~  162 (448)
                      +++.+++     .++++|++++++|++|.+.|+++|.++|+++|+++++|++|+.+..+.+..     .. .+|+++.++
T Consensus       116 l~~~i~~-----~~~~~v~i~~~~~~~G~~~~~~~i~~~a~~~~~~li~D~~~~~g~~~~~~~-----~~-~~d~~~~s~  184 (356)
T cd06451         116 IAEALEQ-----HDIKAVTLTHNETSTGVLNPLEGIGALAKKHDALLIVDAVSSLGGEPFRMD-----EW-GVDVAYTGS  184 (356)
T ss_pred             HHHHHhc-----cCCCEEEEeccCCCcccccCHHHHHHHHHhcCCEEEEeeehhccCcccccc-----cc-CccEEEecC
Confidence            9999965     247899999999999999999999999999999999999998776543321     11 479999999


Q ss_pred             ccccCCCCceEEEEEeccchhhhhcc--CCcccccccCcccccccCCCCCcccCCCCchhHHHHHHHHHhChHHHHHHHH
Q psy14299        163 HKMLGAPLQCSILLIKEKGLLHQANA--TAATYLFQQDKFYDVSFDTGDKSVQCGRKVDAFKLWLMWKARGNLGFRHFVD  240 (448)
Q Consensus       163 hK~l~~P~g~G~l~vr~~~~~~~~~~--~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~g~~~~i~  240 (448)
                      |||+++|.|+|+++++++ .......  ....++...                              ..     ..... 
T Consensus       185 ~K~l~~p~g~G~l~~~~~-~~~~~~~~~~~~~~~~~~------------------------------~~-----~~~~~-  227 (356)
T cd06451         185 QKALGAPPGLGPIAFSER-ALERIKKKTKPKGFYFDL------------------------------LL-----LLKYW-  227 (356)
T ss_pred             chhccCCCCcceeEECHH-HHHHHHhcCCCCceeecH------------------------------HH-----HHhhh-
Confidence            999999999999999764 3333221  001110000                              00     00000 


Q ss_pred             HhhhhccCCCccchhhhhhhhhhhhhhhhhhhhhhhccccccccccCCCCCccc-c-ccchhhHHHHHHHHHhcCccHHH
Q psy14299        241 NAVDCSRGSMTFSTLLCFDLQGLLHQANATAATYLFQQDKFYDVSFDTGDKSVQ-C-GRKVDAFKLWLMWKARGNLGFRH  318 (448)
Q Consensus       241 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~-~~~~~~~~~~~~~~~~~~~G~~~  318 (448)
                                                                      ....+. + .+...+.++..+++++..+|+++
T Consensus       228 ------------------------------------------------~~~~~~~~t~~~~~~~a~~aal~~l~~~~~~~  259 (356)
T cd06451         228 ------------------------------------------------GEGYSYPHTPPVNLLYALREALDLILEEGLEN  259 (356)
T ss_pred             ------------------------------------------------cccCCCCCCChHHHHHHHHHHHHHHHHhhHHH
Confidence                                                            000000 1 11333556667888888889999


Q ss_pred             HHHHHHHHHHHHHHHhhcCCCeEEeccCC--ceeeEEEEeeccCCCccccchhhhhhhhhhhHHHHHHHHhC-CcEEEEe
Q psy14299        319 FVDNAVDCSRYFLSQISQRPGFRLVIPEF--QCTNICFWFIPVSLRDKVEDETWWSTLSKVAPRIKEKLVLG-GTLMIGY  395 (448)
Q Consensus       319 ~~~~~~~l~~~~~~~L~~~pg~~l~~~~~--~~~~v~f~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~L~~~-g~~~~~~  395 (448)
                      +.++..++++++.+.|.++ |++++ .++  ..+.+.+...|.+..               ...+.+.|.++ | +++.+
T Consensus       260 ~~~~~~~~~~~l~~~L~~~-g~~~~-~~~~~~~~~~~~~~~~~~~~---------------~~~~~~~L~~~~g-I~~~~  321 (356)
T cd06451         260 RWARHRRLAKALREGLEAL-GLKLL-AKPELRSPTVTAVLVPEGVD---------------GDEVVRRLMKRYN-IEIAG  321 (356)
T ss_pred             HHHHHHHHHHHHHHHHHHc-CCeec-cCcccCCCceEEEECCCCCC---------------HHHHHHHHHHhCC-EEEec
Confidence            9999999999999999998 99987 432  244444322232222               23788899988 8 55544


Q ss_pred             eecCCcccccEEEEEecCCCCCCHHHHHHHHHHHHHHH
Q psy14299        396 QPLQHRNLHNFFRLVTTCHPASSRQDMDYAIDQIELRG  433 (448)
Q Consensus       396 ~~~~g~~~~~~lRis~~~~~~~t~edid~l~~al~~~~  433 (448)
                      +....  .++++|+|+  +.++|+||+++++++|+++.
T Consensus       322 g~~~~--~~~~iRis~--~~~~~~e~v~~~~~~l~~~~  355 (356)
T cd06451         322 GLGPT--AGKVFRIGH--MGEATREDVLGVLSALEEAL  355 (356)
T ss_pred             ccccc--cCCEEEEec--CCCCCHHHHHHHHHHHHHHh
Confidence            32211  136999999  78999999999999999865

This family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). The major groups in this CD correspond to alanine-glyoxylate aminotransferase (AGAT), serine-glyoxylate aminotransferase (SGAT), and 3-hydroxykynurenine transaminase (HKT). AGAT is a homodimeric protein, which catalyses the transamination of glyoxylate to glycine, and SGAT converts serine and glyoxylate to hydroxypyruvate and glycine. HKT catalyzes the PLP-dependent transamination of 3-hydroxykynurenine, a potentially toxic metabolite of the kynurenine pathway.

>PLN02409 serine--glyoxylate aminotransaminase

Probab=99.95  E-value=2e-25  Score=228.91  Aligned_cols=303  Identities=12%  Similarity=0.076  Sum_probs=216.8

Q ss_pred             cEEEeCcHHHHHHHHHHHHHHhcCCcccccCCCCCCCeEEEecCCCchHH--HHHHHHhCCCCCcEEEEecCCCCCcCHH
Q psy14299          4 KPFLLPGGSISNMYSICLARYRLDPDTKRKGLSHLPPLCMFTSEDSHYSM--LKAAHWLGIGMDNVIRVKTNERGQMICS   81 (448)
Q Consensus         4 ~g~~t~ggT~an~~al~~a~~~~~~~~~~~G~~~~~~~~Vl~~~~~H~s~--~~~~~~~g~~~~~v~~v~~~~~g~id~e   81 (448)
                      ..+++++||.++..++....+              +++.|+++...|++.  ...++..|.   +++.++.++++.+|++
T Consensus        62 ~vi~~~~gt~a~~~a~~~~~~--------------~Gd~Vlv~~~~~~~~~~~~~~~~~g~---~v~~v~~~~~~~~~~~  124 (401)
T PLN02409         62 PFIFPTTGTGAWESALTNTLS--------------PGDKVVSFRIGQFSLLWIDQMQRLNF---DVDVVESPWGQGADLD  124 (401)
T ss_pred             EEEEeCCcHHHHHHHHHhcCC--------------CCCEEEEeCCCchhHHHHHHHHHcCC---ceEEEECCCCCCCCHH
Confidence            468899999887777654322              567788888899775  466777787   7899998877779999


Q ss_pred             HHHHHHHHhhhcCCCcEEEEEeccCCccccccCHHHHHHH--HHHcCCEEEEecccccccccccchhhhhcCCCCccEEE
Q psy14299         82 FLEQTIQTSLAEKKIPLFVNATAGTTVLGAFDPLDEIATV--CEKYDLWMHVDACWGGSLIFSEKYSFVLKGINRANSVS  159 (448)
Q Consensus        82 ~Le~~l~~~~~~~~~~~lVv~~~~~t~tG~~~~l~~I~~i--a~~~g~~l~VD~A~~~~~~~~~~~~~~~~~~~~aD~~~  159 (448)
                      +++++++++  .++++++|+++|++|+||.+.|+++|+++  ||++|++++||++++.+..+++..     .+ .+|+++
T Consensus       125 ~l~~~l~~~--~~~~~k~v~~~~~~~~tG~~~~~~~i~~l~~~~~~g~~~vvD~v~s~g~~~id~~-----~~-~~D~~~  196 (401)
T PLN02409        125 ILKSKLRQD--TNHKIKAVCVVHNETSTGVTNDLAGVRKLLDCAQHPALLLVDGVSSIGALDFRMD-----EW-GVDVAL  196 (401)
T ss_pred             HHHHHHhhC--cCCCccEEEEEeecccccccCCHHHHHHHHhhhccCcEEEEEcccccCCcccccc-----cc-CccEEE
Confidence            999999752  11258899999999999999999999999  999999999999999887765431     11 479999


Q ss_pred             ECCccccCCCCceEEEEEeccchhhhhccCC--cccccccCcccccccCCCCCcccCCCCchhHHHHHHHHHhChHHHHH
Q psy14299        160 WNPHKMLGAPLQCSILLIKEKGLLHQANATA--ATYLFQQDKFYDVSFDTGDKSVQCGRKVDAFKLWLMWKARGNLGFRH  237 (448)
Q Consensus       160 ~s~hK~l~~P~g~G~l~vr~~~~~~~~~~~~--~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~g~~~  237 (448)
                      +++|||+++|.|+|+++++++. +....+..  +.|+..                                       ..
T Consensus       197 ~s~~K~l~~P~G~G~l~~~~~~-~~~~~~~~~~~~~~~~---------------------------------------~~  236 (401)
T PLN02409        197 TGSQKALSLPTGLGIVCASPKA-LEASKTAKSPRVFFDW---------------------------------------AD  236 (401)
T ss_pred             EcCccccCcCCCcceeEECHHH-HHHHhcCCCCCeecCH---------------------------------------HH
Confidence            9999999999999999987653 33332111  111110                                       00


Q ss_pred             HHHHhhhhccCCCccchhhhhhhhhhhhhhhhhhhhhhhccccccccccCCCCCccccccchhhHHHHHHHHHhcCccHH
Q psy14299        238 FVDNAVDCSRGSMTFSTLLCFDLQGLLHQANATAATYLFQQDKFYDVSFDTGDKSVQCGRKVDAFKLWLMWKARGNLGFR  317 (448)
Q Consensus       238 ~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~  317 (448)
                      ..+.                                        +    ..+...-..++...++++..+++++.++|++
T Consensus       237 ~~~~----------------------------------------~----~~g~~~~~Tp~~~~~~al~~al~~~~~~G~e  272 (401)
T PLN02409        237 YLKF----------------------------------------Y----KLGTYWPYTPSIQLLYGLRAALDLIFEEGLE  272 (401)
T ss_pred             HHHH----------------------------------------H----hcCCCCCCCccHHHHHHHHHHHHHHHHhhHH
Confidence            0000                                        0    0000001133455677888889998899999


Q ss_pred             HHHHHHHHHHHHHHHHhhcCCCeEEeccC-C--ceeeEE-EEeeccCCCccccchhhhhhhhhhhHHHHHHHHhCCcEEE
Q psy14299        318 HFVDNAVDCSRYFLSQISQRPGFRLVIPE-F--QCTNIC-FWFIPVSLRDKVEDETWWSTLSKVAPRIKEKLVLGGTLMI  393 (448)
Q Consensus       318 ~~~~~~~~l~~~~~~~L~~~pg~~l~~~~-~--~~~~v~-f~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~L~~~g~~~~  393 (448)
                      ++.++..++++++++.|+++ |++++ .+ +  .++.++ |.+ |.+++               ..++.+.|.++..+.+
T Consensus       273 ~i~~~~~~l~~~l~~~L~~~-g~~~~-~~~~~~~s~~v~~~~~-p~~~~---------------~~~l~~~l~~~~~i~i  334 (401)
T PLN02409        273 NVIARHARLGEATRLAVEAW-GLKLC-TKKPEWRSDTVTAVVV-PEGID---------------SAEIVKNAWKKYNLSL  334 (401)
T ss_pred             HHHHHHHHHHHHHHHHHHHc-CCeec-cCChhhcccceEEEeC-CCCCC---------------HHHHHHHHHHhCCEEE
Confidence            99999999999999999987 99988 43 2  243333 432 44443               1257777765533666


Q ss_pred             EeeecCCcccccEEEEEecCCCCCCHHHHHHHHHHHHHHHHHhH
Q psy14299        394 GYQPLQHRNLHNFFRLVTTCHPASSRQDMDYAIDQIELRGAEVD  437 (448)
Q Consensus       394 ~~~~~~g~~~~~~lRis~~~~~~~t~edid~l~~al~~~~~~~~  437 (448)
                      .++...-+  +.+||+++|  .|++++|+.+++++|+++..+++
T Consensus       335 ~~G~~~~~--~~~~Rig~~--g~~~~~~~~~~~~~~~~~l~~~g  374 (401)
T PLN02409        335 GLGLNKVA--GKVFRIGHL--GNVNELQLLGALAGVEMVLKDVG  374 (401)
T ss_pred             EcCCCccc--CCEEEEcCC--CCCCHHHHHHHHHHHHHHHHHcC
Confidence            55433211  369999997  38899999999999999988765

>TIGR02326 transamin_PhnW 2-aminoethylphosphonate--pyruvate transaminase

Probab=99.95  E-value=1.6e-25  Score=226.41  Aligned_cols=298  Identities=13%  Similarity=0.129  Sum_probs=207.9

Q ss_pred             cEEEeCcHHHHHHHHHHHHHHhcCCcccccCCCCCCCeEEEecCCCchH-HHHHHHHhCCCCCcEEEEecCCCCCcCHHH
Q psy14299          4 KPFLLPGGSISNMYSICLARYRLDPDTKRKGLSHLPPLCMFTSEDSHYS-MLKAAHWLGIGMDNVIRVKTNERGQMICSF   82 (448)
Q Consensus         4 ~g~~t~ggT~an~~al~~a~~~~~~~~~~~G~~~~~~~~Vl~~~~~H~s-~~~~~~~~g~~~~~v~~v~~~~~g~id~e~   82 (448)
                      ..++|+|||+++..++.....+             ++.+++++...|.+ +...++..|.   +++.++.++++.+|+++
T Consensus        56 ~i~~t~~~t~al~~~~~~l~~~-------------~~~vlv~~~~~~~~~~~~~a~~~g~---~~~~v~~~~~~~~d~~~  119 (363)
T TIGR02326        56 SVLLQGSGTFAVEAVIGSAVPK-------------DGKLLVVINGAYGARIVQIAEYLGI---PHHVVDTGEVEPPDVVE  119 (363)
T ss_pred             EEEEcCCCHHHHHHHHHhcCCC-------------CCeEEEEeCChhhHHHHHHHHHcCC---ceEEEeCCCCCCCCHHH
Confidence            3789999999988877665432             44556666667766 3577788888   78999998889999999


Q ss_pred             HHHHHHHhhhcCCCcEEEEEeccCCccccccCHHHHHHHHHHcCCEEEEecccccccccccchhhhhcCCCCccEEEECC
Q psy14299         83 LEQTIQTSLAEKKIPLFVNATAGTTVLGAFDPLDEIATVCEKYDLWMHVDACWGGSLIFSEKYSFVLKGINRANSVSWNP  162 (448)
Q Consensus        83 Le~~l~~~~~~~~~~~lVv~~~~~t~tG~~~~l~~I~~ia~~~g~~l~VD~A~~~~~~~~~~~~~~~~~~~~aD~~~~s~  162 (448)
                      +++++++.    .++++|.+++++|+||.+.|+++|+++||+||++++||++|+.+..+.+..     .+ .+|+++.++
T Consensus       120 l~~~l~~~----~~~~~v~~~~~~~~tG~~~~i~~I~~l~~~~g~~livD~~~~~g~~~~~~~-----~~-~~D~~~~s~  189 (363)
T TIGR02326       120 VEAILAAD----PAITHIALVHCETTTGILNPIEAVAKLAHRHGKVTIVDAMSSFGGIPIDIA-----EL-HIDYLISSA  189 (363)
T ss_pred             HHHHHhhC----CCccEEEEEeecCCccccCcHHHHHHHHHHcCCEEEEEccccccCcccchh-----hc-CccEEEecC
Confidence            99998752    245688999999999999999999999999999999999999887655422     22 479999999


Q ss_pred             ccccCCCCceEEEEEeccchhhhhccCCcccccccCcccccccCCCCCcccCCCCchhHHHHHHHHHhChHHHHHHHHHh
Q psy14299        163 HKMLGAPLQCSILLIKEKGLLHQANATAATYLFQQDKFYDVSFDTGDKSVQCGRKVDAFKLWLMWKARGNLGFRHFVDNA  242 (448)
Q Consensus       163 hK~l~~P~g~G~l~vr~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~g~~~~i~~~  242 (448)
                      |||+++|.|+|+++++++. +........++...                       ....|   +.         .+  
T Consensus       190 ~K~l~~p~G~G~l~~~~~~-~~~~~~~~~~~~~~-----------------------~~~~~---~~---------~~--  231 (363)
T TIGR02326       190 NKCIQGVPGFGFVIARQAE-LAACKGNARSLSLD-----------------------LYDQW---RC---------ME--  231 (363)
T ss_pred             ccccccCCcceEEEECHHH-HHHhhcCCCceeec-----------------------HHHHH---HH---------Hh--
Confidence            9999999999999997753 33221110110000                       00000   00         00  


Q ss_pred             hhhccCCCccchhhhhhhhhhhhhhhhhhhhhhhccccccccccCCCCCccccccchhhHHHHHHHHHhcCc-cHHHHHH
Q psy14299        243 VDCSRGSMTFSTLLCFDLQGLLHQANATAATYLFQQDKFYDVSFDTGDKSVQCGRKVDAFKLWLMWKARGNL-GFRHFVD  321 (448)
Q Consensus       243 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-G~~~~~~  321 (448)
                                                                 +.-+...|+ .+.+.++++..+++.+..+ |++++.+
T Consensus       232 -------------------------------------------~~~~~~~ft-~~~~~~~al~~al~~l~~~g~~~~~~~  267 (363)
T TIGR02326       232 -------------------------------------------DNHGKWRFT-SPTHVVHAFAQALLELEKEGGVAARHQ  267 (363)
T ss_pred             -------------------------------------------ccCCCCCCC-CcHHHHHHHHHHHHHHHHhhCHHHHHH
Confidence                                                       000001111 1344566667777766454 6999999


Q ss_pred             HHHHHHHHHHHHhhcCCCeEEeccCC--ceeeE-EEEeeccC--CCccccchhhhhhhhhhhHHHHHHHHhCCcEEEEee
Q psy14299        322 NAVDCSRYFLSQISQRPGFRLVIPEF--QCTNI-CFWFIPVS--LRDKVEDETWWSTLSKVAPRIKEKLVLGGTLMIGYQ  396 (448)
Q Consensus       322 ~~~~l~~~~~~~L~~~pg~~l~~~~~--~~~~v-~f~~~~~~--~~~~~~~~~~~~~~~~~~~~i~~~L~~~g~~~~~~~  396 (448)
                      +..++++++++.|.++ |++++ .++  +.+++ .|.+ |..  +.               ...+.+.|.++| +++.++
T Consensus       268 ~~~~~~~~l~~~L~~~-g~~~~-~~~~~~~~~~~~~~~-~~~~~~~---------------~~~v~~~L~~~g-i~v~~g  328 (363)
T TIGR02326       268 RYQQNQKTLVAGMRAL-GFEPL-LDDEIQSPIITSFYS-PEDPDYR---------------FADFYQRLKEQG-FVIYPG  328 (363)
T ss_pred             HHHHHHHHHHHHHHHc-CCeec-cCcccCCceEEEEEC-CCCCCCC---------------HHHHHHHHHHCC-EEEECC
Confidence            9999999999999998 88886 432  34443 3443 221  11               136888898888 555544


Q ss_pred             ecCCcccccEEEEEecCCCCCCHHHHHHHHHHHHHHH
Q psy14299        397 PLQHRNLHNFFRLVTTCHPASSRQDMDYAIDQIELRG  433 (448)
Q Consensus       397 ~~~g~~~~~~lRis~~~~~~~t~edid~l~~al~~~~  433 (448)
                      ...+.   .++|++++  .+++.+|+++++++|+++.
T Consensus       329 ~~~~~---~~iRi~~~--~~~~~edv~~~l~~l~~~l  360 (363)
T TIGR02326       329 KVSQV---DCFRIGNI--GEVDAADITRLLTAIGKAM  360 (363)
T ss_pred             cCCCC---CEEEEecC--CCCCHHHHHHHHHHHHHHh
Confidence            33322   68999984  5789999999999998864

Members of this family are 2-aminoethylphosphonate--pyruvate transaminase. This enzyme acts on the most common type of naturally occurring phosphonate. It interconverts 2-aminoethylphosphonate plus pyruvate with 2-phosphonoacetaldehyde plus alanine. The enzyme phosphonoacetaldehyde hydrolase (EC 3.11.1.1), usually encoded by an adjacent gene, then cleaves the C-P bond of phosphonoacetaldehyde, adding water to yield acetaldehyde plus inorganic phosphate. Species with this pathway generally have an identified phosphonate ABC transporter but do not also have the multisubunit C-P lysase complex as found in Escherichia coli.

>COG0075 Serine-pyruvate aminotransferase/archaeal aspartate aminotransferase [Amino acid transport and metabolism]

Probab=99.94  E-value=2.4e-25  Score=221.35  Aligned_cols=301  Identities=14%  Similarity=0.146  Sum_probs=221.1

Q ss_pred             EEEeCcHHHHHHHHHHHHHHhcCCcccccCCCCCCCeEEEecCCCchH--HHHHHHHhCCCCCcEEEEecCCCCCcCHHH
Q psy14299          5 PFLLPGGSISNMYSICLARYRLDPDTKRKGLSHLPPLCMFTSEDSHYS--MLKAAHWLGIGMDNVIRVKTNERGQMICSF   82 (448)
Q Consensus         5 g~~t~ggT~an~~al~~a~~~~~~~~~~~G~~~~~~~~Vl~~~~~H~s--~~~~~~~~g~~~~~v~~v~~~~~g~id~e~   82 (448)
                      .+++.+||.+.-.++.....              |++.|++-.+.-++  +.+.++.+|.   +++.+..+++-.+|+++
T Consensus        59 ~ll~gsGt~amEAav~sl~~--------------pgdkVLv~~nG~FG~R~~~ia~~~g~---~v~~~~~~wg~~v~p~~  121 (383)
T COG0075          59 VLLSGSGTLAMEAAVASLVE--------------PGDKVLVVVNGKFGERFAEIAERYGA---EVVVLEVEWGEAVDPEE  121 (383)
T ss_pred             EEEcCCcHHHHHHHHHhccC--------------CCCeEEEEeCChHHHHHHHHHHHhCC---ceEEEeCCCCCCCCHHH
Confidence            45567777775555554443              56667666666665  7789999999   79999998888999999


Q ss_pred             HHHHHHHhhhcCCCcEEEEEeccCCccccccCHHHHHHHHHHcCCEEEEecccccccccccchhhhhcCCCCccEEEECC
Q psy14299         83 LEQTIQTSLAEKKIPLFVNATAGTTVLGAFDPLDEIATVCEKYDLWMHVDACWGGSLIFSEKYSFVLKGINRANSVSWNP  162 (448)
Q Consensus        83 Le~~l~~~~~~~~~~~lVv~~~~~t~tG~~~~l~~I~~ia~~~g~~l~VD~A~~~~~~~~~~~~~~~~~~~~aD~~~~s~  162 (448)
                      ++++|+++    +..+.|.++|++|+||+++|+++|+++||+||+.++||+..+.|..+++...+      ++|+++.++
T Consensus       122 v~~~L~~~----~~~~~V~~vH~ETSTGvlnpl~~I~~~~k~~g~l~iVDaVsS~Gg~~~~vd~w------giDv~itgS  191 (383)
T COG0075         122 VEEALDKD----PDIKAVAVVHNETSTGVLNPLKEIAKAAKEHGALLIVDAVSSLGGEPLKVDEW------GIDVAITGS  191 (383)
T ss_pred             HHHHHhcC----CCccEEEEEeccCcccccCcHHHHHHHHHHcCCEEEEEecccCCCcccchhhc------CccEEEecC
Confidence            99999853    45779999999999999999999999999999999999987777664443221      479999999


Q ss_pred             ccccCCCCceEEEEEeccchhhhhccCCc-ccccccCcccccccCCCCCcccCCCCchhHHHHHHHHHhChHHHHHHHHH
Q psy14299        163 HKMLGAPLQCSILLIKEKGLLHQANATAA-TYLFQQDKFYDVSFDTGDKSVQCGRKVDAFKLWLMWKARGNLGFRHFVDN  241 (448)
Q Consensus       163 hK~l~~P~g~G~l~vr~~~~~~~~~~~~~-~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~g~~~~i~~  241 (448)
                      +|+|++|+|.+++.++++.+........+ .|++...                                    +.++.+.
T Consensus       192 QK~l~~PPGla~v~~S~~a~e~~~~~~~~~~ylDL~~------------------------------------~~~~~~~  235 (383)
T COG0075         192 QKALGAPPGLAFVAVSERALEAIEERKHPSFYLDLKK------------------------------------WLKYMEK  235 (383)
T ss_pred             chhccCCCccceeEECHHHHHHHhcCCCCceeecHHH------------------------------------HHHHHhh
Confidence            99999999999999988765333222223 2332111                                    1111100


Q ss_pred             hhhhccCCCccchhhhhhhhhhhhhhhhhhhhhhhccccccccccCCCCCccccccchhhHHHHHHHHHhcCccHHHHHH
Q psy14299        242 AVDCSRGSMTFSTLLCFDLQGLLHQANATAATYLFQQDKFYDVSFDTGDKSVQCGRKVDAFKLWLMWKARGNLGFRHFVD  321 (448)
Q Consensus       242 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~  321 (448)
                      .                                               +..-.=++...++++..+++.+.+||++.+++
T Consensus       236 ~-----------------------------------------------~~~p~Tppv~~i~aL~~al~~i~~EGle~r~~  268 (383)
T COG0075         236 K-----------------------------------------------GSTPYTPPVNLIYALREALDLILEEGLEARIA  268 (383)
T ss_pred             c-----------------------------------------------CCCCCCCCHHHHHHHHHHHHHHHHhhHHHHHH
Confidence            0                                               00011122455677888999999999999999


Q ss_pred             HHHHHHHHHHHHhhcCCCeEEeccCC--ceeeEEEEeeccCCCccccchhhhhhhhhhhHHHHHHHHhCCcEEEEee--e
Q psy14299        322 NAVDCSRYFLSQISQRPGFRLVIPEF--QCTNICFWFIPVSLRDKVEDETWWSTLSKVAPRIKEKLVLGGTLMIGYQ--P  397 (448)
Q Consensus       322 ~~~~l~~~~~~~L~~~pg~~l~~~~~--~~~~v~f~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~L~~~g~~~~~~~--~  397 (448)
                      ++..+++++++.+.++ ||+++ .++  .+++++....|.++++               .++...+.+++.+.+.++  .
T Consensus       269 RH~~~~~a~r~~~~al-Gl~~~-~~~~~~s~tvta~~~P~g~~~---------------~~~~~~~~~~~g~~i~gg~~~  331 (383)
T COG0075         269 RHRRLAEALRAGLEAL-GLELF-ADPERRSPTVTAIKVPEGVDD---------------KKVRRALLKEYGVEIAGGQGP  331 (383)
T ss_pred             HHHHHHHHHHHHHHHc-CCccc-cCcccCCCceEEEECCCCCCc---------------HHHHHHHHHhCCEEecccccc
Confidence            9999999999999999 99998 433  4566666666776652               134446666644655543  2


Q ss_pred             cCCcccccEEEEEecCCCCCCHHHHHHHHHHHHHHHHHhHH
Q psy14299        398 LQHRNLHNFFRLVTTCHPASSRQDMDYAIDQIELRGAEVDL  438 (448)
Q Consensus       398 ~~g~~~~~~lRis~~~~~~~t~edid~l~~al~~~~~~~~~  438 (448)
                      +.|    .++||++||  +.+.+|+.+++.+|+.+.++++.
T Consensus       332 l~g----kifRIGhMG--~~~~~dv~~~l~ale~~L~~~g~  366 (383)
T COG0075         332 LKG----KIFRIGHMG--NVRPEDVLAALAALEAALRELGV  366 (383)
T ss_pred             cCc----cEEEEecCc--cCCHHHHHHHHHHHHHHHHHcCC
Confidence            333    599999995  88999999999999999988754

>PRK02948 cysteine desulfurase; Provisional

Probab=99.94  E-value=4.1e-25  Score=224.92  Aligned_cols=295  Identities=16%  Similarity=0.156  Sum_probs=201.6

Q ss_pred             cEEEeCcHHHHHHHHHHHHHHhcCCcccccCCCCCCCeEEEecCCCchHHHHHHHHhCCCCCcEEEEecCCCCCcCHHHH
Q psy14299          4 KPFLLPGGSISNMYSICLARYRLDPDTKRKGLSHLPPLCMFTSEDSHYSMLKAAHWLGIGMDNVIRVKTNERGQMICSFL   83 (448)
Q Consensus         4 ~g~~t~ggT~an~~al~~a~~~~~~~~~~~G~~~~~~~~Vl~~~~~H~s~~~~~~~~g~~~~~v~~v~~~~~g~id~e~L   83 (448)
                      ..+||+|+|++|..++........          .+++.|+++..+|+|+...++.+.....++..++.++++.+|+++|
T Consensus        62 ~i~~~~g~t~a~~~~~~~~~~~~~----------~~g~~vv~~~~~h~s~~~~~~~~~~~g~~v~~v~~~~~~~~d~~~l  131 (381)
T PRK02948         62 GIYFTSGGTESNYLAIQSLLNALP----------QNKKHIITTPMEHASIHSYFQSLESQGYTVTEIPVDKSGLIRLVDL  131 (381)
T ss_pred             eEEEeCcHHHHHHHHHHHHHHhcc----------CCCCEEEECCcccHHHHHHHHHHHhCCCEEEEEeeCCCCCCCHHHH
Confidence            478999999999888877654211          1456799999999998777654422222789999988899999999


Q ss_pred             HHHHHHhhhcCCCcEEEEEeccCCccccccCHHHHHHHHHHcCCEEEEecccccccccccchhhhhcCCCCccEEEECCc
Q psy14299         84 EQTIQTSLAEKKIPLFVNATAGTTVLGAFDPLDEIATVCEKYDLWMHVDACWGGSLIFSEKYSFVLKGINRANSVSWNPH  163 (448)
Q Consensus        84 e~~l~~~~~~~~~~~lVv~~~~~t~tG~~~~l~~I~~ia~~~g~~l~VD~A~~~~~~~~~~~~~~~~~~~~aD~~~~s~h  163 (448)
                      ++.+++      ++++|++++++|+||.+.|+++|.++|+++|+++|||++++.+..+.+..     .. .+|+++.++|
T Consensus       132 ~~~l~~------~~~lv~~~~~~n~tG~~~~~~~I~~l~~~~~~~vivD~~~~~g~~~~~~~-----~~-~~d~~~~s~~  199 (381)
T PRK02948        132 ERAITP------DTVLASIQHANSEIGTIQPIAEIGALLKKYNVLFHSDCVQTFGKLPIDVF-----EM-GIDSLSVSAH  199 (381)
T ss_pred             HHhcCC------CCEEEEEECCcCCcEeehhHHHHHHHHHHcCCEEEEEChhhccccccCcc-----cC-CCCEEEecHH
Confidence            999854      47899999999999999999999999999999999999998886644321     12 4799999999


Q ss_pred             cccCCCCceEEEEEeccchhhhhccCCcccccccCcccccccCCCCCcccCCCCchhHHHHHHHHHhChHHHHHHHHHhh
Q psy14299        164 KMLGAPLQCSILLIKEKGLLHQANATAATYLFQQDKFYDVSFDTGDKSVQCGRKVDAFKLWLMWKARGNLGFRHFVDNAV  243 (448)
Q Consensus       164 K~l~~P~g~G~l~vr~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~g~~~~i~~~~  243 (448)
                      |++ +|.|+|+++++++..+...       .....         ....+..+                            
T Consensus       200 K~~-gp~G~G~l~~~~~~~~~~~-------~~~~~---------~~~~~~~~----------------------------  234 (381)
T PRK02948        200 KIY-GPKGVGAVYINPQVRWKPV-------FPGTT---------HEKGFRPG----------------------------  234 (381)
T ss_pred             hcC-CCCcEEEEEEcCCCCCCCc-------ccCCC---------CCCCcCCC----------------------------
Confidence            975 5999999998765211110       00000         00000000                            


Q ss_pred             hhccCCCccchhhhhhhhhhhhhhhhhhhhhhhccccccccccCCCCCccccccchhhHHHHHHHHHhcCccHHHHHHHH
Q psy14299        244 DCSRGSMTFSTLLCFDLQGLLHQANATAATYLFQQDKFYDVSFDTGDKSVQCGRKVDAFKLWLMWKARGNLGFRHFVDNA  323 (448)
Q Consensus       244 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~  323 (448)
                                                                         ..+.+.++++..+++... ++++++.++.
T Consensus       235 ---------------------------------------------------t~~~~~~~a~~~al~~~~-~~~~~~~~~~  262 (381)
T PRK02948        235 ---------------------------------------------------TVNVPGIAAFLTAAENIL-KNMQEESLRF  262 (381)
T ss_pred             ---------------------------------------------------CccHHHHHHHHHHHHHHH-HHHHHHHHHH
Confidence                                                               011223334444454433 2577888999


Q ss_pred             HHHHHHHHHHhhcCCCeEEecc-CC--c-eeeEEEEeeccCCCccccchhhhhhhhhhhHHHHHHHHhCCcEEEEeeec-
Q psy14299        324 VDCSRYFLSQISQRPGFRLVIP-EF--Q-CTNICFWFIPVSLRDKVEDETWWSTLSKVAPRIKEKLVLGGTLMIGYQPL-  398 (448)
Q Consensus       324 ~~l~~~~~~~L~~~pg~~l~~~-~~--~-~~~v~f~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~L~~~g~~~~~~~~~-  398 (448)
                      .++++++.+.|+++ |+++... .+  . ..++.|...  ++.               ..++...|.++| +.+..+.. 
T Consensus       263 ~~~~~~l~~~L~~~-~~~v~~~~~~~~~~~~i~~~~~~--~~~---------------~~~~~~~l~~~g-I~v~~g~~c  323 (381)
T PRK02948        263 KELRSYFLEQIQTL-PLPIEVEGHSTSCLPHIIGVTIK--GIE---------------GQYTMLECNRRG-IAISTGSAC  323 (381)
T ss_pred             HHHHHHHHHHHhcC-CCCEEEeCCCccCcCCEEEEEeC--CCC---------------HHHHHHhcccCC-EEEEchHhc
Confidence            99999999999998 6665411 11  1 224444432  221               125667787888 55543221 


Q ss_pred             ----C---------Cc---ccccEEEEEecCCCCCCHHHHHHHHHHHHHHHHHhHH
Q psy14299        399 ----Q---------HR---NLHNFFRLVTTCHPASSRQDMDYAIDQIELRGAEVDL  438 (448)
Q Consensus       399 ----~---------g~---~~~~~lRis~~~~~~~t~edid~l~~al~~~~~~~~~  438 (448)
                          .         +.   ..++++|+|+  +++||++|+|+++++|+++.+++.+
T Consensus       324 ~~~~~~p~~~~~~~~~~~~~~~~~lRis~--~~~~t~~di~~l~~~l~~~~~~~~~  377 (381)
T PRK02948        324 QVGKQEPSKTMLAIGKTYEEAKQFVRFSF--GQQTTKDQIDTTIHALETIGNQFYR  377 (381)
T ss_pred             CCCCCCCCHHHHHcCCChHHhCceEEEEc--CCCCCHHHHHHHHHHHHHHHHHHhc
Confidence                0         10   0136899999  7899999999999999999876654

>TIGR01976 am_tr_V_VC1184 cysteine desulfurase family protein, VC1184 subfamily

Probab=99.94  E-value=1.3e-24  Score=222.35  Aligned_cols=287  Identities=16%  Similarity=0.155  Sum_probs=194.6

Q ss_pred             cEEEeCcHHHHHHHHHHHHHHhcCCcccccCCCCCCCeEEEecCCCchHHH----HHHHHhCCCCCcEEEEecCC-CCCc
Q psy14299          4 KPFLLPGGSISNMYSICLARYRLDPDTKRKGLSHLPPLCMFTSEDSHYSML----KAAHWLGIGMDNVIRVKTNE-RGQM   78 (448)
Q Consensus         4 ~g~~t~ggT~an~~al~~a~~~~~~~~~~~G~~~~~~~~Vl~~~~~H~s~~----~~~~~~g~~~~~v~~v~~~~-~g~i   78 (448)
                      ..++++|+|+++...+.+.....           .+++.|++++.+|+|..    ..++..|.   +++.++.++ ++.+
T Consensus        79 ~v~~~~~~t~~l~~~~~~~~~~~-----------~~gd~vl~~~~~~~s~~~~~~~~~~~~g~---~~~~~~~~~~~~~~  144 (397)
T TIGR01976        79 EVVFGANATSLTFLLSRAISRRW-----------GPGDEVIVTRLDHEANISPWLQAAERAGA---KVKWARVDEATGEL  144 (397)
T ss_pred             eEEEeCCHHHHHHHHHHHHHhcC-----------CCCCEEEEcCCchHhHHHHHHHHHHhcCC---EEEEEeccccCCCc
Confidence            47899999999765554432211           26678999999998865    44556677   788888876 6899


Q ss_pred             CHHHHHHHHHHhhhcCCCcEEEEEeccCCccccccCHHHHHHHHHHcCCEEEEecccccccccccchhhhhcCCCCccEE
Q psy14299         79 ICSFLEQTIQTSLAEKKIPLFVNATAGTTVLGAFDPLDEIATVCEKYDLWMHVDACWGGSLIFSEKYSFVLKGINRANSV  158 (448)
Q Consensus        79 d~e~Le~~l~~~~~~~~~~~lVv~~~~~t~tG~~~~l~~I~~ia~~~g~~l~VD~A~~~~~~~~~~~~~~~~~~~~aD~~  158 (448)
                      |++++++.+++      ++++|++++++|++|.+.|+++|+++||+||++++||++|+.+..+.+.     ... .+|++
T Consensus       145 ~~~~l~~~i~~------~~~lv~i~~~~n~tG~~~~~~~i~~~~~~~~~~~ivD~a~~~~~~~~~~-----~~~-~~d~~  212 (397)
T TIGR01976       145 HPDDLASLLSP------RTRLVAVTAASNTLGSIVDLAAITELVHAAGALVVVDAVHYAPHGLIDV-----QAT-GADFL  212 (397)
T ss_pred             CHHHHHHhcCC------CceEEEEeCCCCCCCccCCHHHHHHHHHHcCCEEEEehhhhccccCCCH-----HHc-CCCEE
Confidence            99999999854      4789999999999999999999999999999999999999876554332     111 47999


Q ss_pred             EECCccccCCCCceEEEEEeccchhhhhccCCcccccccCcccccccCCCCCcccCCCCchhHHHHHHHHHhChHHHHHH
Q psy14299        159 SWNPHKMLGAPLQCSILLIKEKGLLHQANATAATYLFQQDKFYDVSFDTGDKSVQCGRKVDAFKLWLMWKARGNLGFRHF  238 (448)
Q Consensus       159 ~~s~hK~l~~P~g~G~l~vr~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~g~~~~  238 (448)
                      ++++|||++ |. +|+++++++ .+....+....+.....          ...++.+.+                     
T Consensus       213 ~~s~~K~~g-~~-~G~l~~~~~-~~~~l~~~~~~~~~~~~----------~~~~~~gt~---------------------  258 (397)
T TIGR01976       213 TCSAYKFFG-PH-MGILWGRPE-LLMNLPPYKLTFSYDTG----------PERFELGTP---------------------  258 (397)
T ss_pred             EEechhhcC-Cc-eEEEEEcHH-HHhhCCCccccCccCCC----------cchhcCCCC---------------------
Confidence            999999985 54 899888664 33332221111111000          000111111                     


Q ss_pred             HHHhhhhccCCCccchhhhhhhhhhhhhhhhhhhhhhhccccccccccCCCCCccccccchhhHHHHHHHHHhcCc----
Q psy14299        239 VDNAVDCSRGSMTFSTLLCFDLQGLLHQANATAATYLFQQDKFYDVSFDTGDKSVQCGRKVDAFKLWLMWKARGNL----  314 (448)
Q Consensus       239 i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----  314 (448)
                                                                                +...++++..+++++...    
T Consensus       259 ----------------------------------------------------------~~~~~~~l~~al~~~~~~g~~~  280 (397)
T TIGR01976       259 ----------------------------------------------------------QYELLAGVVAAVDYLAGLGESA  280 (397)
T ss_pred             ----------------------------------------------------------CHHHHHHHHHHHHHHHHhCccc
Confidence                                                                      011223333333333322    


Q ss_pred             ----------cHHHHHHHHHHHHHHHHHHhhcCCCeEEeccC----CceeeEEEEeeccCCCccccchhhhhhhhhhhHH
Q psy14299        315 ----------GFRHFVDNAVDCSRYFLSQISQRPGFRLVIPE----FQCTNICFWFIPVSLRDKVEDETWWSTLSKVAPR  380 (448)
Q Consensus       315 ----------G~~~~~~~~~~l~~~~~~~L~~~pg~~l~~~~----~~~~~v~f~~~~~~~~~~~~~~~~~~~~~~~~~~  380 (448)
                                +++++.++..++++++++.|+++++++++ .+    ...+++.|...  +..               ..+
T Consensus       281 ~~~~~~~~~~~~~~~~~~~~~l~~~l~~~L~~~~~~~~~-~~~~~~~~~~~~~~~~~--~~~---------------~~~  342 (397)
T TIGR01976       281 NGSRRERLVASFQAIDAYENRLAEYLLVGLSDLPGVTLY-GVARLAARVPTVSFTVH--GLP---------------PQR  342 (397)
T ss_pred             ccchhhhhhHHHHHHHHHHHHHHHHHHHHHhcCCCEEEe-CCCCccCCCceEEEEeC--CcC---------------HHH
Confidence                      47888999999999999999999889998 43    24666666532  111               236


Q ss_pred             HHHHHHhCCcEEEEeeecC--------Cc-ccccEEEEEecCCCCCCHHHHHHHHHHH
Q psy14299        381 IKEKLVLGGTLMIGYQPLQ--------HR-NLHNFFRLVTTCHPASSRQDMDYAIDQI  429 (448)
Q Consensus       381 i~~~L~~~g~~~~~~~~~~--------g~-~~~~~lRis~~~~~~~t~edid~l~~al  429 (448)
                      +.++|.++| +++......        +. ..++++|+|+  |+++|++|+++|+++|
T Consensus       343 l~~~L~~~g-I~v~~~~~~~~~~~~~~~~~~~~~~iRis~--~~~~t~~di~~l~~~l  397 (397)
T TIGR01976       343 VVRRLADQG-IDAWAGHFYAVRLLRRLGLNDEGGVVRVGL--AHYNTAEEVDRLLEAL  397 (397)
T ss_pred             HHHHHHHCC-eEEEeCccchHHHHHHhCCCCCCCeEEEEe--eccCCHHHHHHHHHhC
Confidence            888999998 445432110        11 0126899999  7899999999999875

This model describes a subfamily of probable pyridoxal phosphate-dependent enzymes in the aminotransferase class V family (pfam00266). The most closely related characterized proteins are active as cysteine desulfurases, selenocysteine lyases, or both; some are involved in FeS cofactor biosynthesis and are designated NifS. An active site Cys residue present in those sequences, in motifs resembling GHHC or GSAC, is not found in this family. The function of members of this family is unknown, but seems unlike to be as an aminotransferase.

>PRK09331 Sep-tRNA:Cys-tRNA synthetase; Provisional

Probab=99.94  E-value=3.1e-24  Score=219.08  Aligned_cols=158  Identities=15%  Similarity=0.135  Sum_probs=132.8

Q ss_pred             cEEEeCcHHHHHHHHHHHHHHhcCCcccccCCCCCCCeEEEecCCCchHHHHHHHHhCCCCCcEEEEec--CCCCCcCHH
Q psy14299          4 KPFLLPGGSISNMYSICLARYRLDPDTKRKGLSHLPPLCMFTSEDSHYSMLKAAHWLGIGMDNVIRVKT--NERGQMICS   81 (448)
Q Consensus         4 ~g~~t~ggT~an~~al~~a~~~~~~~~~~~G~~~~~~~~Vl~~~~~H~s~~~~~~~~g~~~~~v~~v~~--~~~g~id~e   81 (448)
                      ..+||+|+|++|..++.+...              +++.|+++..+|++...+++..|+   +++.++.  ++++.+|++
T Consensus        80 ~~~~~~g~t~a~~~al~~l~~--------------~gd~Vlv~~~~h~s~~~~~~~~G~---~~~~v~~~~~~~~~~d~~  142 (387)
T PRK09331         80 EARVTHGAREGKFAVMHSLCK--------------KGDYVVLDGLAHYTSYVAAERAGL---NVREVPKTGYPEYKITPE  142 (387)
T ss_pred             cEEEeCCHHHHHHHHHHHhcC--------------CCCEEEECCCchHHHHHHHHHcCC---EEEEEeCccCcCCCcCHH
Confidence            467899999999988877643              567799999999999999998888   7889998  678899999


Q ss_pred             HHHHHHHHhhh-cCCCcEEEEEeccCCccccccCHHHHHHHHHHcCCEEEEecccccccccccchhhhhcCCCCccEEEE
Q psy14299         82 FLEQTIQTSLA-EKKIPLFVNATAGTTVLGAFDPLDEIATVCEKYDLWMHVDACWGGSLIFSEKYSFVLKGINRANSVSW  160 (448)
Q Consensus        82 ~Le~~l~~~~~-~~~~~~lVv~~~~~t~tG~~~~l~~I~~ia~~~g~~l~VD~A~~~~~~~~~~~~~~~~~~~~aD~~~~  160 (448)
                      ++++++++..+ .++++++|+++++++++|.+.|+++|+++||+||+++|||+||+.+..+.+...     . ++|++++
T Consensus       143 ~l~~~l~~~~~~~~~~~~lV~l~~~~~~tG~~~~l~~I~~la~~~g~~livD~a~~~g~~~~~~~~-----~-g~D~~~~  216 (387)
T PRK09331        143 AYAEKIEEVKEETGKPPALALLTHVDGNYGNLADAKKVAKVAHEYGIPFLLNGAYTVGRMPVDGKK-----L-GADFIVG  216 (387)
T ss_pred             HHHHHHHHhhhccCCCCEEEEEECCCCCCcccccHHHHHHHHHHcCCEEEEECCcccCCcCCCHHH-----c-CCCEEEe
Confidence            99999975321 234689999999999999999999999999999999999999999877554321     1 4799999


Q ss_pred             CCccccCCCCceEEEEEeccchhhh
Q psy14299        161 NPHKMLGAPLQCSILLIKEKGLLHQ  185 (448)
Q Consensus       161 s~hK~l~~P~g~G~l~vr~~~~~~~  185 (448)
                      ++|||+++|.|+|+++++++ ....
T Consensus       217 s~~K~l~~~~~~G~l~~~~~-~i~~  240 (387)
T PRK09331        217 SGHKSMAASAPSGVLATTEE-YADK  240 (387)
T ss_pred             eCcccccCCCCEEEEEECHH-HHhh
Confidence            99999999999999888654 4444

>PRK14012 cysteine desulfurase; Provisional

Probab=99.93  E-value=4.8e-24  Score=218.92  Aligned_cols=152  Identities=18%  Similarity=0.271  Sum_probs=126.4

Q ss_pred             cEEEeCcHHHHHHHHHHHHHHhcCCcccccCCCCCCCeEEEecCCCchHHHHHHHHh---CCCCCcEEEEecCCCCCcCH
Q psy14299          4 KPFLLPGGSISNMYSICLARYRLDPDTKRKGLSHLPPLCMFTSEDSHYSMLKAAHWL---GIGMDNVIRVKTNERGQMIC   80 (448)
Q Consensus         4 ~g~~t~ggT~an~~al~~a~~~~~~~~~~~G~~~~~~~~Vl~~~~~H~s~~~~~~~~---g~~~~~v~~v~~~~~g~id~   80 (448)
                      .++||+|||+++.+++.++.....          .+++.|++++.+|+++...++.+   |+   +++.++.++++.+|+
T Consensus        68 ~v~~~~g~t~al~~~l~~l~~~~~----------~~gd~Vi~~~~~~~s~~~~~~~~~~~g~---~~~~v~~~~~g~~d~  134 (404)
T PRK14012         68 EIVFTSGATESDNLAIKGAAHFYQ----------KKGKHIITSKTEHKAVLDTCRQLEREGF---EVTYLDPQSNGIIDL  134 (404)
T ss_pred             eEEEeCCHHHHHHHHHHHHHHhhc----------CCCCEEEEecCccHHHHHHHHHHHhCCC---EEEEEccCCCCcCCH
Confidence            378999999999888776543211          25678999999999988777654   66   788999988999999


Q ss_pred             HHHHHHHHHhhhcCCCcEEEEEeccCCccccccCHHHHHHHHHHcCCEEEEecccccccccccchhhhhcCCCCccEEEE
Q psy14299         81 SFLEQTIQTSLAEKKIPLFVNATAGTTVLGAFDPLDEIATVCEKYDLWMHVDACWGGSLIFSEKYSFVLKGINRANSVSW  160 (448)
Q Consensus        81 e~Le~~l~~~~~~~~~~~lVv~~~~~t~tG~~~~l~~I~~ia~~~g~~l~VD~A~~~~~~~~~~~~~~~~~~~~aD~~~~  160 (448)
                      ++|+++|++      ++++|++++++|++|.+.|+++|.++||++|+++|+|+||+.+..+.+..     .. .+|++++
T Consensus       135 ~~l~~~i~~------~t~lv~~~~~~n~tG~~~~~~~I~~la~~~g~~vivD~a~~~g~~~~~~~-----~~-~~D~~~~  202 (404)
T PRK14012        135 EKLEAAMRD------DTILVSIMHVNNEIGVIQDIAAIGEICRERGIIFHVDAAQSVGKVPIDLS-----KL-KVDLMSF  202 (404)
T ss_pred             HHHHHhcCC------CCEEEEEECcCCCccchhhHHHHHHHHHHcCCEEEEEcchhcCCcccCcc-----cC-CCCEEEE
Confidence            999999964      47899999999999999999999999999999999999999888755421     11 4899999


Q ss_pred             CCccccCCCCceEEEEEeccc
Q psy14299        161 NPHKMLGAPLQCSILLIKEKG  181 (448)
Q Consensus       161 s~hK~l~~P~g~G~l~vr~~~  181 (448)
                      ++||.+ +|.|+|+++++++.
T Consensus       203 s~~K~~-gp~g~G~l~~~~~~  222 (404)
T PRK14012        203 SAHKIY-GPKGIGALYVRRKP  222 (404)
T ss_pred             ehhhcc-CCCceEEEEEecCC
Confidence            999954 68899999998764

>PLN02414 glycine dehydrogenase (decarboxylating)

Probab=99.93  E-value=6.3e-24  Score=234.06  Aligned_cols=315  Identities=12%  Similarity=0.053  Sum_probs=216.0

Q ss_pred             cEEEeCcHH----HHHHHHHHHHHHhcCCcccccCCCCCCCeEEEecCCCchHHHHHHHHhCCCCCcEEEEecCCCCCcC
Q psy14299          4 KPFLLPGGS----ISNMYSICLARYRLDPDTKRKGLSHLPPLCMFTSEDSHYSMLKAAHWLGIGMDNVIRVKTNERGQMI   79 (448)
Q Consensus         4 ~g~~t~ggT----~an~~al~~a~~~~~~~~~~~G~~~~~~~~Vl~~~~~H~s~~~~~~~~g~~~~~v~~v~~~~~g~id   79 (448)
                      .+.|++++|    +++++++....+.       .|-  .++.+|+++..+|.++...+.+.|+   +++.+|++++|.+|
T Consensus       585 ~v~f~pnaga~ge~a~~~vi~~~~~~-------~Gd--~~r~~vli~~~aH~sn~a~a~~~G~---~vv~v~~d~~G~vD  652 (993)
T PLN02414        585 SFSLQPNAGAAGEYAGLMVIRAYHLS-------RGD--HHRNVCIIPVSAHGTNPASAAMCGM---KIVVVGTDAKGNIN  652 (993)
T ss_pred             eEEEcCCCcHHHHHHHHHHHHHHHhc-------cCC--CCCCEEEeCCCcCccCHHHHHHCCC---EEEEeccCCCCCcC
Confidence            478999999    8888888777543       110  1234899999999999999999888   89999999999999


Q ss_pred             HHHHHHHHHHhhhcCCCcEEEEEeccCCccccccCHHHHHHHHHHcCCEEEEecccccccccccchhhhhcCCCCccEEE
Q psy14299         80 CSFLEQTIQTSLAEKKIPLFVNATAGTTVLGAFDPLDEIATVCEKYDLWMHVDACWGGSLIFSEKYSFVLKGINRANSVS  159 (448)
Q Consensus        80 ~e~Le~~l~~~~~~~~~~~lVv~~~~~t~tG~~~~l~~I~~ia~~~g~~l~VD~A~~~~~~~~~~~~~~~~~~~~aD~~~  159 (448)
                      +++|++++++.   ..++++|++++++|..|..+|+++|+++||++|+.++||+|+..+......    . +--++|+++
T Consensus       653 le~L~~~i~~~---~~~ta~V~vt~pSn~gg~e~~I~eI~~iah~~Galv~vDgAq~~a~~~l~~----p-~~~GaD~~~  724 (993)
T PLN02414        653 IEELRKAAEAH---KDNLAALMVTYPSTHGVYEEGIDEICDIIHDNGGQVYMDGANMNAQVGLTS----P-GFIGADVCH  724 (993)
T ss_pred             HHHHHHHHhcc---CCCeEEEEEECCCccccccchHHHHHHHHHHcCCEEEEEecCHHhccCcCC----c-cccCCCEEE
Confidence            99999999752   125789999999999999999999999999999999999999877642221    0 112589999


Q ss_pred             ECCccccCCCCc-----eEEEEEeccchhhhhccCCcccccccCcccccccCCCCCcccCCCCchhHHHHHHHHHhChHH
Q psy14299        160 WNPHKMLGAPLQ-----CSILLIKEKGLLHQANATAATYLFQQDKFYDVSFDTGDKSVQCGRKVDAFKLWLMWKARGNLG  234 (448)
Q Consensus       160 ~s~hK~l~~P~g-----~G~l~vr~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~g  234 (448)
                      ++.||||++|.|     +|++++++.  +..   ..|+......   .........+-.++....              .
T Consensus       725 ~s~HK~f~~P~G~GGPg~G~l~~~~~--L~p---~lPg~~v~~~---~~~~~r~~~s~iGt~~~a--------------~  782 (993)
T PLN02414        725 LNLHKTFCIPHGGGGPGMGPIGVKKH--LAP---FLPSHPVVPT---GGIPRPEKTQPLGTISAA--------------P  782 (993)
T ss_pred             ecCCccCCcCcccCCCCeeeEEEchh--hcc---cCCCCccccC---CCcccccCCCCcCCccch--------------h
Confidence            999999987765     999988763  222   1222211100   000000000000110000              0


Q ss_pred             HHHHHHHhhhhccCCCccchhhhhhhhhhhhhhhhhhhhhhhccccccccccCCCCCccccccchhhHHHHHHHHHhcCc
Q psy14299        235 FRHFVDNAVDCSRGSMTFSTLLCFDLQGLLHQANATAATYLFQQDKFYDVSFDTGDKSVQCGRKVDAFKLWLMWKARGNL  314 (448)
Q Consensus       235 ~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  314 (448)
                      +                                                            +.-..+...+..++.+|.+
T Consensus       783 ~------------------------------------------------------------g~al~l~~A~~yi~~lG~~  802 (993)
T PLN02414        783 W------------------------------------------------------------GSALILPISYTYIAMMGSE  802 (993)
T ss_pred             h------------------------------------------------------------hhHHHHHHHHHHHHHHCHh
Confidence            0                                                            0012244556677888999


Q ss_pred             cHHHHHHHHHHHHHHHHHHhhcCCCeEEeccC--CceeeEEEEeeccCCCccccchhhhhhhhhhhHHHHHHHHhCCcEE
Q psy14299        315 GFRHFVDNAVDCSRYFLSQISQRPGFRLVIPE--FQCTNICFWFIPVSLRDKVEDETWWSTLSKVAPRIKEKLVLGGTLM  392 (448)
Q Consensus       315 G~~~~~~~~~~l~~~~~~~L~~~pg~~l~~~~--~~~~~v~f~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~L~~~g~~~  392 (448)
                      |+++..++...+++|++++|++..++... .+  +.++.+.+.+.+  ++..         .+.....+.++|.+.| +.
T Consensus       803 Gl~~~a~~a~~nAnYl~~rL~~~~~~~~~-~~~~~~~hEfv~~~~~--l~~~---------~g~~~~di~krL~d~G-ih  869 (993)
T PLN02414        803 GLTDASKIAILNANYMAKRLEGHYPVLFR-GKNGTCAHEFIIDLRP--FKNT---------AGIEPEDVAKRLMDYG-FH  869 (993)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhhCCcccc-CCCCCeeeeEEEeccc--cccc---------cCCCHHHHHHHHHHcC-cE
Confidence            99999999999999999999885444332 22  334455554431  1100         0011247899999888 43


Q ss_pred             EEeeecCCcccccEEEEEecCCCCCCHHHHHHHHHHHHHHHHHhHH
Q psy14299        393 IGYQPLQHRNLHNFFRLVTTCHPASSRQDMDYAIDQIELRGAEVDL  438 (448)
Q Consensus       393 ~~~~~~~g~~~~~~lRis~~~~~~~t~edid~l~~al~~~~~~~~~  438 (448)
                      .....+...   +++|+++  +.+++++|+|+|+++|+.+.++...
T Consensus       870 apt~~~pv~---~~lmiep--TE~~skeelDrf~~al~~i~~e~~~  910 (993)
T PLN02414        870 APTMSWPVP---GTLMIEP--TESESKAELDRFCDALISIREEIAD  910 (993)
T ss_pred             EeeeccccC---CEEEEEe--eeeCCHHHHHHHHHHHHHHHHHHHH
Confidence            333223333   7999999  7999999999999999999887654

>PRK04366 glycine dehydrogenase subunit 2; Validated

Probab=99.93  E-value=3.5e-24  Score=224.13  Aligned_cols=314  Identities=15%  Similarity=0.125  Sum_probs=204.9

Q ss_pred             EEEeCcHHHHHHHHHHHHHHhcCCcccccCCCCCCCeEEEecCCCchHHHHHHHHhCCCCCcEEEEecCCCCCcCHHHHH
Q psy14299          5 PFLLPGGSISNMYSICLARYRLDPDTKRKGLSHLPPLCMFTSEDSHYSMLKAAHWLGIGMDNVIRVKTNERGQMICSFLE   84 (448)
Q Consensus         5 g~~t~ggT~an~~al~~a~~~~~~~~~~~G~~~~~~~~Vl~~~~~H~s~~~~~~~~g~~~~~v~~v~~~~~g~id~e~Le   84 (448)
                      .++..+|+.+.+.++..++....    ..|-  .++..|+++...|+++...++..|+   +++.+|.++++.+|+++|+
T Consensus       132 ~l~~~~GA~a~~~~l~~~r~~~~----~~Gd--~~~~~Vlv~~~~hp~~~~~~~~~G~---~vv~v~~~~~~~~D~e~L~  202 (481)
T PRK04366        132 TLQPAAGAHGELTGLLMIRAYHE----ARGD--TKRTEVIVPDSAHGTNPASAAMAGF---KVVEIPSNEDGLVDLEALK  202 (481)
T ss_pred             EEEeCcHHHHHHHHHHHHHHHhh----ccCc--CCCCEEEEcCCccHhHHHHHHHcCC---EEEEeecCCCCCcCHHHHH
Confidence            45556777777766554443211    0110  0234788999999999999999898   7999999888999999999


Q ss_pred             HHHHHhhhcCCCcEEEEEeccCCccccc-cCHHHHHHHHHHcCCEEEEecccccccccccchhhhhcCCCCccEEEECCc
Q psy14299         85 QTIQTSLAEKKIPLFVNATAGTTVLGAF-DPLDEIATVCEKYDLWMHVDACWGGSLIFSEKYSFVLKGINRANSVSWNPH  163 (448)
Q Consensus        85 ~~l~~~~~~~~~~~lVv~~~~~t~tG~~-~~l~~I~~ia~~~g~~l~VD~A~~~~~~~~~~~~~~~~~~~~aD~~~~s~h  163 (448)
                      +++.+      ++++|++++++ ++|.+ +|+++|+++||++|++++||+|+..+.+...  +.   +-.++|++++++|
T Consensus       203 ~~i~~------~t~~V~v~~Pn-~tG~~~~dl~eI~~~a~~~gal~iVD~a~~~~~~g~~--~~---~~~GaD~~~~~~h  270 (481)
T PRK04366        203 AAVGE------DTAALMLTNPN-TLGLFERNILEIAEIVHEAGGLLYYDGANLNAILGKA--RP---GDMGFDVVHLNLH  270 (481)
T ss_pred             hhccc------CCeEEEEeCCC-CccccchHHHHHHHHHHHcCCEEEEEecChhhhcccC--Cc---cccCCCEEEEech
Confidence            99864      47888888877 79988 6899999999999999999999976533211  11   1125899999999


Q ss_pred             cccCCCCce-----EEEEEeccchhhhhccCCcccccccCcccccccCCCCCcccCCCCchhHHHHHHHHHhChHHHHHH
Q psy14299        164 KMLGAPLQC-----SILLIKEKGLLHQANATAATYLFQQDKFYDVSFDTGDKSVQCGRKVDAFKLWLMWKARGNLGFRHF  238 (448)
Q Consensus       164 K~l~~P~g~-----G~l~vr~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~g~~~~  238 (448)
                      |||++|.|+     |+++++++ +.... +  +..+.....  .......  ..+..+|+.+.                 
T Consensus       271 K~l~~P~g~Ggp~~G~l~~~~~-~~~~l-p--~~~v~~~g~--~~~l~~~--r~~~i~r~~a~-----------------  325 (481)
T PRK04366        271 KTFSTPHGGGGPGSGPVGVKEE-LAPFL-P--VPVVEKDGD--RYRLDYD--RPKSIGRVRAF-----------------  325 (481)
T ss_pred             hhcCCCCCCCCCCeeeeeehhh-hHhhC-C--CCeeeccCC--ceeeccc--ccccCCCcccc-----------------
Confidence            999987554     58888764 33322 1  111110000  0000000  00001111100                 


Q ss_pred             HHHhhhhccCCCccchhhhhhhhhhhhhhhhhhhhhhhccccccccccCCCCCccccccchhhHHHHHHHHHhcCccHHH
Q psy14299        239 VDNAVDCSRGSMTFSTLLCFDLQGLLHQANATAATYLFQQDKFYDVSFDTGDKSVQCGRKVDAFKLWLMWKARGNLGFRH  318 (448)
Q Consensus       239 i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~  318 (448)
                                                                              ......+++++..+.+.|.+|+++
T Consensus       326 --------------------------------------------------------t~~~l~~~~a~~~l~~~G~~Gl~~  349 (481)
T PRK04366        326 --------------------------------------------------------YGNFGVLVRAYAYIRSLGAEGLRE  349 (481)
T ss_pred             --------------------------------------------------------cCchHHHHHHHHHHHHHHHHHHHH
Confidence                                                                    011244667778888999999999


Q ss_pred             HHHHHHHHHHHHHHHhhcCCCeEEeccCCceeeEEEEeeccCCCccccchhhhhhhhhhhHHHHHHHHhCCcEEEEeeec
Q psy14299        319 FVDNAVDCSRYFLSQISQRPGFRLVIPEFQCTNICFWFIPVSLRDKVEDETWWSTLSKVAPRIKEKLVLGGTLMIGYQPL  398 (448)
Q Consensus       319 ~~~~~~~l~~~~~~~L~~~pg~~l~~~~~~~~~v~f~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~L~~~g~~~~~~~~~  398 (448)
                      +.++...+++|++++|+++  +++....+....+.|....-..+            +....++.++|.++|+........
T Consensus       350 ~a~~~~~~a~~l~~~L~~~--~~~~~~~~~~~~~~~~~~~~~~~------------g~~~~~v~~~L~~~Gi~~~~~~~p  415 (481)
T PRK04366        350 VSEDAVLNANYLKARLKDI--YDLPYDRPCMHEFVLSGKKLKET------------GVRTLDIAKRLLDYGFHPPTIYFP  415 (481)
T ss_pred             HHHHHHHHHHHHHHHhHhh--CcccCCCCeeEEEEEECcccccc------------CCCHHHHHHHHHHCCccCCccccc
Confidence            9999999999999999987  44431223334444432100010            011347999999999432211111


Q ss_pred             CCcccccEEEEEecCCCCCCHHHHHHHHHHHHHHHHHhHH
Q psy14299        399 QHRNLHNFFRLVTTCHPASSRQDMDYAIDQIELRGAEVDL  438 (448)
Q Consensus       399 ~g~~~~~~lRis~~~~~~~t~edid~l~~al~~~~~~~~~  438 (448)
                      ..  ..+++|+++  +.++|++|||+|+++|+++.++...
T Consensus       416 ~~--~~~~l~is~--~e~~t~edid~l~~~l~~i~~~~~~  451 (481)
T PRK04366        416 LI--VPEALMIEP--TETESKETLDAFIAAMKQIAEEAKE  451 (481)
T ss_pred             cc--cCCeEEEcc--cCCCCHHHHHHHHHHHHHHHHHHHh
Confidence            11  126899999  7899999999999999999877654

>PRK05367 glycine dehydrogenase; Provisional

Probab=99.93  E-value=6.8e-24  Score=234.70  Aligned_cols=310  Identities=14%  Similarity=0.079  Sum_probs=208.6

Q ss_pred             EEEeCcHHHHHHHHHHHHHHhcCCcccccCCCCCCCeEEEecCCCchHHHHHHHHhCCCCCcEEEEecCCCCCcCHHHHH
Q psy14299          5 PFLLPGGSISNMYSICLARYRLDPDTKRKGLSHLPPLCMFTSEDSHYSMLKAAHWLGIGMDNVIRVKTNERGQMICSFLE   84 (448)
Q Consensus         5 g~~t~ggT~an~~al~~a~~~~~~~~~~~G~~~~~~~~Vl~~~~~H~s~~~~~~~~g~~~~~v~~v~~~~~g~id~e~Le   84 (448)
                      .+..++|+++++.+++++|....    ..|.  .+..+|++++.+|.|+..++...|+   +++.++++.+|.+|+++|+
T Consensus       561 sl~~~~ga~ge~agL~a~r~~~~----~~G~--~~r~~vlis~~aH~snp~sa~~~G~---~vv~v~~d~~G~iD~~~L~  631 (954)
T PRK05367        561 SLQPNAGAQGEYAGLLAIRAYHE----SRGE--GHRDVCLIPSSAHGTNPASAVMAGM---KVVVVACDENGNIDLDDLR  631 (954)
T ss_pred             EECccHHHHHHHHHHHHHHHHhh----ccCC--CCCCEEEEEchhhhhhHHHHHHCCC---EEEEECCCCCCCcCHHHHH
Confidence            34455777889888877775311    1121  1345799999999999999999999   8999999989999999999


Q ss_pred             HHHHHhhhcCCCcEEEEEeccCCccccccCHHHHHHHHHHcCCEEEEecccccccccccchhhhhcCCCCccEEEECCcc
Q psy14299         85 QTIQTSLAEKKIPLFVNATAGTTVLGAFDPLDEIATVCEKYDLWMHVDACWGGSLIFSEKYSFVLKGINRANSVSWNPHK  164 (448)
Q Consensus        85 ~~l~~~~~~~~~~~lVv~~~~~t~tG~~~~l~~I~~ia~~~g~~l~VD~A~~~~~~~~~~~~~~~~~~~~aD~~~~s~hK  164 (448)
                      +++++.   +.++.+|+++++++..+..+|+++|+++||++|+++|||+|+..+.......     +.-++|++++++||
T Consensus       632 ~~i~~~---~~~la~V~it~pst~G~~e~~I~eI~~i~h~~G~~v~VDgA~~~al~~l~~p-----g~~GADi~~~s~HK  703 (954)
T PRK05367        632 AKAEEH---ADNLAAIMITYPSTHGVFEETIREICEIVHEHGGQVYLDGANMNAQVGLARP-----GDIGADVSHLNLHK  703 (954)
T ss_pred             HHHhcc---CCCeEEEEEEcCCCCeeecCCHHHHHHHHHHcCCEEEEECcChhhccCCCCh-----hhcCCCEEEecCcc
Confidence            999752   2357789999999864445899999999999999999999998665533211     12258999999999


Q ss_pred             ccCCCCc-----eEEEEEeccchhhhhccCCcccccccCcccccccCCCCCcccCCCCchhHHHHHHHHHhChHHHHHHH
Q psy14299        165 MLGAPLQ-----CSILLIKEKGLLHQANATAATYLFQQDKFYDVSFDTGDKSVQCGRKVDAFKLWLMWKARGNLGFRHFV  239 (448)
Q Consensus       165 ~l~~P~g-----~G~l~vr~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~g~~~~i  239 (448)
                      ||++|.|     +|++++++.  +...+   ++.....+      .+....+...+..                 +..  
T Consensus       704 ~f~~P~G~GGPg~G~l~vr~~--l~p~l---pg~~v~~~------~~~~~~g~v~ta~-----------------~g~--  753 (954)
T PRK05367        704 TFCIPHGGGGPGVGPIGVKAH--LAPFL---PGHPVQIA------GGETGIGAVSAAP-----------------FGS--  753 (954)
T ss_pred             cCCCCcCCCCCceEEEeeccc--ccccC---CCCccCcC------CCCCCcCcchhHH-----------------HHH--
Confidence            9987776     558888753  22111   11110000      0000000000000                 000  


Q ss_pred             HHhhhhccCCCccchhhhhhhhhhhhhhhhhhhhhhhccccccccccCCCCCccccccchhhHHHHHHHHHhcCccHHHH
Q psy14299        240 DNAVDCSRGSMTFSTLLCFDLQGLLHQANATAATYLFQQDKFYDVSFDTGDKSVQCGRKVDAFKLWLMWKARGNLGFRHF  319 (448)
Q Consensus       240 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~  319 (448)
                                                                                -..+...|..++..|.+|++++
T Consensus       754 ----------------------------------------------------------al~~~~a~~yi~~~G~~Glr~~  775 (954)
T PRK05367        754 ----------------------------------------------------------ASILPISWMYIRMMGAEGLRQA  775 (954)
T ss_pred             ----------------------------------------------------------HHHHHHHHHHHHHHCHHHHHHH
Confidence                                                                      0113445677778888888888


Q ss_pred             HHHHHHHHHHHHHHhhcCCCeEEec-cC--CceeeEEEEeeccCCCccccchhhhhhhhhhhHHHHHHHHhCCcEEEEee
Q psy14299        320 VDNAVDCSRYFLSQISQRPGFRLVI-PE--FQCTNICFWFIPVSLRDKVEDETWWSTLSKVAPRIKEKLVLGGTLMIGYQ  396 (448)
Q Consensus       320 ~~~~~~l~~~~~~~L~~~pg~~l~~-~~--~~~~~v~f~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~L~~~g~~~~~~~  396 (448)
                      .++...+++|+.++|++.  +++.. .+  +..+.++|.+.+....           .+..+.++.++|.+.|+.... .
T Consensus       776 a~~~~~~A~Yl~~~L~~~--~~~~~~~~~~~~~~e~i~~~~~~~~~-----------~g~~~~di~krL~d~G~~~~t-~  841 (954)
T PRK05367        776 TEVAILNANYIAKRLKDH--YPVLYTGANGRVAHECILDLRPLKES-----------TGITVDDIAKRLIDYGFHAPT-M  841 (954)
T ss_pred             HHHHHHHHHHHHHHHHhh--cCccccCCCCCcccceEEEeeccccc-----------CCCCHHHHHHHHHHCCCeEee-c
Confidence            899999999999999875  44431 11  3355566665421100           011235799999999943322 2


Q ss_pred             ecCCcccccEEEEEecCCCCCCHHHHHHHHHHHHHHHHHhHH
Q psy14299        397 PLQHRNLHNFFRLVTTCHPASSRQDMDYAIDQIELRGAEVDL  438 (448)
Q Consensus       397 ~~~g~~~~~~lRis~~~~~~~t~edid~l~~al~~~~~~~~~  438 (448)
                      .+...   +.+|+++  +.+++++|+|+|+++|+++.++...
T Consensus       842 ~~pv~---~~l~i~p--tE~~s~~elDr~~~al~~i~~e~~~  878 (954)
T PRK05367        842 SFPVA---GTLMVEP--TESESKAELDRFCDAMIAIRAEIDE  878 (954)
T ss_pred             CCccC---CEEEEEe--eecCCHHHHHHHHHHHHHHHHHHHH
Confidence            22233   7899999  6899999999999999999887765

>TIGR00461 gcvP glycine dehydrogenase (decarboxylating)

Probab=99.93  E-value=8.1e-24  Score=230.57  Aligned_cols=316  Identities=14%  Similarity=0.103  Sum_probs=219.9

Q ss_pred             CCccEEEeCcHHHHHHHHHHHHHHhcCCcccccCCCCCCCeEEEecCCCchHHHHHHHHhCCCCCcEEEEecCCCCCcCH
Q psy14299          1 MNLKPFLLPGGSISNMYSICLARYRLDPDTKRKGLSHLPPLCMFTSEDSHYSMLKAAHWLGIGMDNVIRVKTNERGQMIC   80 (448)
Q Consensus         1 ~~~~g~~t~ggT~an~~al~~a~~~~~~~~~~~G~~~~~~~~Vl~~~~~H~s~~~~~~~~g~~~~~v~~v~~~~~g~id~   80 (448)
                      |+...++.++|++++..+++++|.+.    ..+|-  .++.+|++|..+|.++-..++..|+   +++.||++++|.+|+
T Consensus       545 md~~Sl~p~aGA~gE~agL~aiR~y~----~~rge--~~R~~vlip~saHgtnPasa~~~G~---~Vv~V~~d~~G~iDl  615 (939)
T TIGR00461       545 FDAISLQPNSGAQGEYAGLRVIRSYH----ESRGE--NHRNICLIPVSAHGTNPASAAMAGM---QVVPVNCDQDGNIDL  615 (939)
T ss_pred             CCCcccCCchHHHHHHHHHHHHHHHH----HhcCC--CCCCEEEEEccccCcCHHHHHHCCC---EEEEeccCCCCCcCH
Confidence            45567788999999998888887642    11121  1456799999999999999999999   899999999999999


Q ss_pred             HHHHHHHHHhhhcCCCcEEEEEeccCCccccccC-HHHHHHHHHHcCCEEEEecccccccccccchhhhhcCCCCccEEE
Q psy14299         81 SFLEQTIQTSLAEKKIPLFVNATAGTTVLGAFDP-LDEIATVCEKYDLWMHVDACWGGSLIFSEKYSFVLKGINRANSVS  159 (448)
Q Consensus        81 e~Le~~l~~~~~~~~~~~lVv~~~~~t~tG~~~~-l~~I~~ia~~~g~~l~VD~A~~~~~~~~~~~~~~~~~~~~aD~~~  159 (448)
                      ++|++.+++   .+.++++|++++++| +|.++| +++|+++||++|.+++||+|+..+.......     +.-++|+++
T Consensus       616 e~L~~~i~~---~~~~taaV~iT~pst-~G~~e~~I~eI~~iah~~G~~v~VDgAq~~al~~l~~P-----g~~GaDi~~  686 (939)
T TIGR00461       616 VDLKNKAEQ---HGDELAAVMVTYPST-HGVFEPTIQHACDIVHSFGGQVYLDGANMNAQVGLTSP-----GDLGADVCH  686 (939)
T ss_pred             HHHHHHHhh---cCCceEEEEEEeCCc-CceecccHHHHHHHHHHcCCEEEEEecChhhCCCCCCc-----cccCCCEEE
Confidence            999999975   234688999999999 798877 9999999999999999999997644432211     223689999


Q ss_pred             ECCccccCC-----CCceEEEEEeccchhhhhccCCcccccccCcccccccCCCCCcccCCCCchhHHHHHHHHHhChHH
Q psy14299        160 WNPHKMLGA-----PLQCSILLIKEKGLLHQANATAATYLFQQDKFYDVSFDTGDKSVQCGRKVDAFKLWLMWKARGNLG  234 (448)
Q Consensus       160 ~s~hK~l~~-----P~g~G~l~vr~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~g  234 (448)
                      +|.||+|++     |+|.|++.+|+.  +...++.. ......+    .. + .+..+                  |   
T Consensus       687 ~s~HKtf~~P~G~GGPg~G~i~vr~~--L~~~lPg~-~v~~t~d----~~-g-req~I------------------g---  736 (939)
T TIGR00461       687 LNLHKTFCIPHGGGGPGMGPIGVKSH--LIPFLPKH-DVVSMIT----GI-G-GSKSI------------------G---  736 (939)
T ss_pred             ecCCccCCCCCCCCCCCeEEEEEhhh--chhhcCCC-ccccccc----CC-C-Ccccc------------------c---
Confidence            999999994     455599999864  22222211 1100000    00 0 00000                  0   


Q ss_pred             HHHHHHHhhhhccCCCccchhhhhhhhhhhhhhhhhhhhhhhccccccccccCCCCCcccccc-chhhHHHHHHHHHhcC
Q psy14299        235 FRHFVDNAVDCSRGSMTFSTLLCFDLQGLLHQANATAATYLFQQDKFYDVSFDTGDKSVQCGR-KVDAFKLWLMWKARGN  313 (448)
Q Consensus       235 ~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~  313 (448)
                                   ..                                          +--|.+ -...+..|..++.+|.
T Consensus       737 -------------a~------------------------------------------s~~~~g~a~~~l~a~~yi~~lG~  761 (939)
T TIGR00461       737 -------------SV------------------------------------------SAAPYGSASILPISWMYIKMMGN  761 (939)
T ss_pred             -------------cc------------------------------------------cccccCcHHHHHHHHHHHHHHCH
Confidence                         00                                          000111 2335677788888888


Q ss_pred             ccHHHHHHHHHHHHHHHHHHhhcCCCeEEeccC---CceeeEEEEeeccCCCccccchhhhhhhhhhhHHHHHHHHhCCc
Q psy14299        314 LGFRHFVDNAVDCSRYFLSQISQRPGFRLVIPE---FQCTNICFWFIPVSLRDKVEDETWWSTLSKVAPRIKEKLVLGGT  390 (448)
Q Consensus       314 ~G~~~~~~~~~~l~~~~~~~L~~~pg~~l~~~~---~~~~~v~f~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~L~~~g~  390 (448)
                      +|+++..+....+++|+.++|++  +++++...   +..+.++|++.|..           +..+..+.++.++|.+.|.
T Consensus       762 ~GL~~~a~~ailnAnYl~~rL~~--~~~~l~~~~~~~~~hEfv~~~~~~~-----------~~~g~~~~dIakrL~d~G~  828 (939)
T TIGR00461       762 EGLPKASVVAILNANYMATRLKD--HYPILFVGTLKHVAHECILDLRPLK-----------AKTGIEAIDVAKRLQDYGF  828 (939)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhhc--cCcccccCCCCceeEEEEEeccchh-----------hhcCCCHHHHHHHHHhCCe
Confidence            88888888999999999999997  56766221   34677888765421           1223345689999999994


Q ss_pred             EEEEeeecCCcccccEEEEEecCCCCCCHHHHHHHHHHHHHHHHHhHH
Q psy14299        391 LMIGYQPLQHRNLHNFFRLVTTCHPASSRQDMDYAIDQIELRGAEVDL  438 (448)
Q Consensus       391 ~~~~~~~~~g~~~~~~lRis~~~~~~~t~edid~l~~al~~~~~~~~~  438 (448)
                      .... ..+...   +.+=+.+  ...++++|+|+++++|.++.++...
T Consensus       829 hapt-~~~pv~---g~lmiep--TE~eskeelD~f~~al~~I~~e~~~  870 (939)
T TIGR00461       829 HAPT-LSFPVP---GTLMVEP--TESESLEELDRFCDAMIAIKEEINA  870 (939)
T ss_pred             eccc-cCCccC---CeEEEEe--eccCCHHHHHHHHHHHHHHHHHHHH
Confidence            3222 221222   4566666  3689999999999999999887765

This apparently ubiquitous enzyme is found in bacterial, mammalian and plant sources. The enzyme catalyzes the reaction: GLYCINE + LIPOYLPROTEIN = S-AMINOMETHYL-DIHYDROLIPOYLPROTEIN + CO2. It is part of the glycine decarboxylase multienzyme complex (GDC) consisting of four proteins P, H, L and T. Active site in E.coli is located as the (K) residues at position 713 of the SEED alignment.

>PLN02724 Molybdenum cofactor sulfurase

Probab=99.93  E-value=1.8e-24  Score=238.92  Aligned_cols=313  Identities=15%  Similarity=0.071  Sum_probs=203.2

Q ss_pred             cEEEeCcHHHHHHHHHHHHHHhcCCcccccCCCCCCCeEEEecCCCchHHHHHHHHh---CCCCCcEEEEecC-------
Q psy14299          4 KPFLLPGGSISNMYSICLARYRLDPDTKRKGLSHLPPLCMFTSEDSHYSMLKAAHWL---GIGMDNVIRVKTN-------   73 (448)
Q Consensus         4 ~g~~t~ggT~an~~al~~a~~~~~~~~~~~G~~~~~~~~Vl~~~~~H~s~~~~~~~~---g~~~~~v~~v~~~-------   73 (448)
                      .++||+|+|+|+.++......             .+++.|+++..+|.|+....+++   |+   ++..++.+       
T Consensus        99 ~VvFtsnaT~alnlva~~l~~-------------~~gd~Iv~t~~eH~svl~~~~~a~~~G~---~v~~v~~~~~~~~~~  162 (805)
T PLN02724         99 ACVFTSGATAALKLVGETFPW-------------SSESHFCYTLENHNSVLGIREYALEKGA---AAIAVDIEEAANQPT  162 (805)
T ss_pred             EEEEeCChHHHHHHHHHHCCC-------------CCCCeEEEeeccccchHHHHHHHHHcCC---eEEeccchhcccccc
Confidence            469999999997666433211             25667888999999977554433   55   68888876       


Q ss_pred             -CCCCcCH--HHHHHHHHH----hhhcCCCcEEEEEeccCCccccccCHHHHHHHHHHc-------C-CEEEEecccccc
Q psy14299         74 -ERGQMIC--SFLEQTIQT----SLAEKKIPLFVNATAGTTVLGAFDPLDEIATVCEKY-------D-LWMHVDACWGGS  138 (448)
Q Consensus        74 -~~g~id~--e~Le~~l~~----~~~~~~~~~lVv~~~~~t~tG~~~~l~~I~~ia~~~-------g-~~l~VD~A~~~~  138 (448)
                       ..+.+++  ++|++.+++    ....+.++++|++++.+|.+|.+.|++.|..+++..       | ++++||+||+++
T Consensus       163 ~~~g~~~~~~~~l~~~~~~~l~~~~~~~~~t~LVa~~~vsN~tG~i~pi~~i~~~~~~~~~~~~~~g~~~v~vDaaQ~~g  242 (805)
T PLN02724        163 NSQGSVVVKSRGLQRRNTSKLQKREDDGEAYNLFAFPSECNFSGAKFPLDLVKLIKDNQHSNFSKSGRWMVLLDAAKGCG  242 (805)
T ss_pred             ccccccccchhhhhhhhhhhhccccccCCCcceEEEEccccCCCCcCCHHHHHHHHHhcccccccCcceEEEeehhhhcC
Confidence             3444544  667766421    111123568999999999999999999876555532       3 579999999999


Q ss_pred             cccccchhhhhcCCCCccEEEECCccccCCCCceEEEEEeccchhhhhccCCcccccccCcccccccCCCCCcccCCCCc
Q psy14299        139 LIFSEKYSFVLKGINRANSVSWNPHKMLGAPLQCSILLIKEKGLLHQANATAATYLFQQDKFYDVSFDTGDKSVQCGRKV  218 (448)
Q Consensus       139 ~~~~~~~~~~~~~~~~aD~~~~s~hK~l~~P~g~G~l~vr~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~  218 (448)
                      ..+++...     + .+|++++|+|||+++|.|+|+||++++ .+...   .+.++........  .....+.  ..+. 
T Consensus       243 ~~piDv~~-----~-~~Dfl~~S~HK~~GgP~G~G~L~vr~~-~~~~l---~p~~~GGg~~~~~--~~~~~~~--~~~~-  307 (805)
T PLN02724        243 TSPPDLSR-----Y-PADFVVVSFYKIFGYPTGLGALLVRRD-AAKLL---KKKYFGGGTVAAS--IADIDFV--KRRE-  307 (805)
T ss_pred             CCCCChhh-----c-CCCEEEEecceeccCCCCceEEEEehh-hhhhh---cCCccCCCceEEE--eccccee--eccc-
Confidence            99776432     2 489999999999999999999999875 33222   2233321110000  0000000  0000 


Q ss_pred             hhHHHHHHHHHhChHHHHHHHHHhhhhccCCCccchhhhhhhhhhhhhhhhhhhhhhhccccccccccCCCCCccc--cc
Q psy14299        219 DAFKLWLMWKARGNLGFRHFVDNAVDCSRGSMTFSTLLCFDLQGLLHQANATAATYLFQQDKFYDVSFDTGDKSVQ--CG  296 (448)
Q Consensus       219 ~~~~~~~~~~~~g~~g~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~  296 (448)
                                                                                           ....+|+  -.
T Consensus       308 ---------------------------------------------------------------------~~~~rfE~GT~  318 (805)
T PLN02724        308 ---------------------------------------------------------------------RVEQRFEDGTI  318 (805)
T ss_pred             ---------------------------------------------------------------------cHHHHhcCCCc
Confidence                                                                                 0001111  12


Q ss_pred             cchhhHHHHHHHHHhcCccHHHHHHHHHHHHHHHHHHhhcCC------CeEEeccC-------CceeeEEEEeeccCCCc
Q psy14299        297 RKVDAFKLWLMWKARGNLGFRHFVDNAVDCSRYFLSQISQRP------GFRLVIPE-------FQCTNICFWFIPVSLRD  363 (448)
Q Consensus       297 ~~~~~~~~~~~~~~~~~~G~~~~~~~~~~l~~~~~~~L~~~p------g~~l~~~~-------~~~~~v~f~~~~~~~~~  363 (448)
                      +.+.++++..+++++...|++.+.+|...|++++.+.|+++|      ++++++..       .+.++++|.+...+-..
T Consensus       319 n~~~i~~l~aal~~l~~ig~~~I~~~~~~L~~~l~~~L~~l~~~~g~~~v~iyg~~~~~~~~~~r~~ivsFnv~~~~~~~  398 (805)
T PLN02724        319 SFLSIAALRHGFKLLNRLTISAIAMHTWALTHYVANSLRNLKHGNGAPVCVLYGNHTFKLEFHIQGPIVTFNLKRADGSW  398 (805)
T ss_pred             chhHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHhccCCCCCeEEEEcCCCCCCCCcccccCEEEEEEEcCCCCE
Confidence            256688888999999999999999999999999999999986      58888321       25789999876422110


Q ss_pred             cccchhhhhhhhhhhHHHHHHH-HhCCcEEEE------eeecC----------------------------CcccccEEE
Q psy14299        364 KVEDETWWSTLSKVAPRIKEKL-VLGGTLMIG------YQPLQ----------------------------HRNLHNFFR  408 (448)
Q Consensus       364 ~~~~~~~~~~~~~~~~~i~~~L-~~~g~~~~~------~~~~~----------------------------g~~~~~~lR  408 (448)
                                   +.......| .+.| |.+.      +....                            ++ +.+++|
T Consensus       399 -------------v~~~~v~~l~~~~g-I~vR~G~~Ca~~~~~~~lg~~~~~l~~~~~~~~~c~~~~~~~~~~-~~G~vR  463 (805)
T PLN02724        399 -------------VGHREVEKLASLSG-IQLRTGCFCNPGACAKYLGLSHKDLQANFEAGHVCWDDQDVIHGR-PTGAVR  463 (805)
T ss_pred             -------------eCHHHHHHHHHhcC-cEEeeccccCchHHHHHcCCCHHHHHHHhhcCCccCchhheecCc-ccceEE
Confidence                         001112233 2334 3222      11110                            11 238999


Q ss_pred             EEecCCCCCCHHHHHHHHHHHHHHH
Q psy14299        409 LVTTCHPASSRQDMDYAIDQIELRG  433 (448)
Q Consensus       409 is~~~~~~~t~edid~l~~al~~~~  433 (448)
                      +|+  ++|||.+|||+|+++|++.-
T Consensus       464 vS~--g~ynt~eDvd~lv~~l~~~~  486 (805)
T PLN02724        464 VSF--GYMSTFEDCQKFIDFIISSF  486 (805)
T ss_pred             EEc--CccCCHHHHHHHHHHHHHHh
Confidence            999  79999999999999999965

>PRK13479 2-aminoethylphosphonate--pyruvate transaminase; Provisional

Probab=99.93  E-value=1.4e-23  Score=212.62  Aligned_cols=300  Identities=15%  Similarity=0.121  Sum_probs=204.3

Q ss_pred             EEEeCcHHHHHHHHHHHHHHhcCCcccccCCCCCCCeEEEecCCCchHH--HHHHHHhCCCCCcEEEEecCCCCCcCHHH
Q psy14299          5 PFLLPGGSISNMYSICLARYRLDPDTKRKGLSHLPPLCMFTSEDSHYSM--LKAAHWLGIGMDNVIRVKTNERGQMICSF   82 (448)
Q Consensus         5 g~~t~ggT~an~~al~~a~~~~~~~~~~~G~~~~~~~~Vl~~~~~H~s~--~~~~~~~g~~~~~v~~v~~~~~g~id~e~   82 (448)
                      .++|++||.++..++.....              +++.|++....++..  ...++..|+   ++..+|.++++.+|+++
T Consensus        59 i~~~~~gt~~l~~~~~~l~~--------------~~~~vlv~~~~~~~~~~~~~~~~~g~---~~~~i~~~~~~~~d~~~  121 (368)
T PRK13479         59 VPLQGSGTFSVEAAIGSLVP--------------RDGKVLVPDNGAYGARIAQIAEYLGI---AHVVLDTGEDEPPDAAE  121 (368)
T ss_pred             EEEcCCcHHHHHHHHHhccC--------------CCCeEEEEeCCchHHHHHHHHHHcCC---cEEEEECCCCCCCCHHH
Confidence            56899999998888766543              333444444455443  477777888   78999998888899999


Q ss_pred             HHHHHHHhhhcCCCcEEEEEeccCCccccccCHHHHHHHHHHcCCEEEEecccccccccccchhhhhcCCCCccEEEECC
Q psy14299         83 LEQTIQTSLAEKKIPLFVNATAGTTVLGAFDPLDEIATVCEKYDLWMHVDACWGGSLIFSEKYSFVLKGINRANSVSWNP  162 (448)
Q Consensus        83 Le~~l~~~~~~~~~~~lVv~~~~~t~tG~~~~l~~I~~ia~~~g~~l~VD~A~~~~~~~~~~~~~~~~~~~~aD~~~~s~  162 (448)
                      +++++++.    .++++|.+++++|++|...|+++|.++||++|++++||++++.+..+.+.     ... .+|+++.++
T Consensus       122 l~~~l~~~----~~~~~v~~~~~~~~tG~~~~~~~i~~l~~~~~~~livDa~~~~g~~~~~~-----~~~-~~d~~v~s~  191 (368)
T PRK13479        122 VEAALAAD----PRITHVALVHCETTTGILNPLDEIAAVAKRHGKRLIVDAMSSFGAIPIDI-----AEL-GIDALISSA  191 (368)
T ss_pred             HHHHHHhC----CCCcEEEEEcccCccccccCHHHHHHHHHHcCCEEEEEcccccCCccccc-----ccc-CceEEEecC
Confidence            99998652    24678999999999999999999999999999999999988877654332     111 479999999


Q ss_pred             ccccCCCCceEEEEEeccchhhhhccCCcccccccCcccccccCCCCCcccCCCCchhHHHHHHHHHhChHHHHHHHHHh
Q psy14299        163 HKMLGAPLQCSILLIKEKGLLHQANATAATYLFQQDKFYDVSFDTGDKSVQCGRKVDAFKLWLMWKARGNLGFRHFVDNA  242 (448)
Q Consensus       163 hK~l~~P~g~G~l~vr~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~g~~~~i~~~  242 (448)
                      |||+++|.|+|+++++++ .+........+|..+..                       .   .+.              
T Consensus       192 ~K~l~g~~G~G~l~~~~~-~~~~~~~~~~~~~~~~~-----------------------~---~~~--------------  230 (368)
T PRK13479        192 NKCIEGVPGFGFVIARRS-ELEACKGNSRSLSLDLY-----------------------D---QWA--------------  230 (368)
T ss_pred             ccccccCCCceEEEECHH-HHHHhhcCCCCeeecHH-----------------------H---HHh--------------
Confidence            999999999999999765 33332211111110000                       0   000              


Q ss_pred             hhhccCCCccchhhhhhhhhhhhhhhhhhhhhhhccccccccccCCCCCccccccchhhHHHHHHHHHhcCc-cHHHHHH
Q psy14299        243 VDCSRGSMTFSTLLCFDLQGLLHQANATAATYLFQQDKFYDVSFDTGDKSVQCGRKVDAFKLWLMWKARGNL-GFRHFVD  321 (448)
Q Consensus       243 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-G~~~~~~  321 (448)
                                                               ...+.....+ ..+.+.+.++..+++.+..+ |++++.+
T Consensus       231 -----------------------------------------~~~~~~~~~~-t~~~~~~~~l~~al~~l~~~~~~~~~~~  268 (368)
T PRK13479        231 -----------------------------------------YMEKTGQWRF-TPPTHVVAAFYQALLELEEEGGVPARGA  268 (368)
T ss_pred             -----------------------------------------hhcccCCCCC-CCcHHHHHHHHHHHHHHHHhhCHHHHHH
Confidence                                                     0000001111 12344566666777765444 6889999


Q ss_pred             HHHHHHHHHHHHhhcCCCeEEeccCC--cee-eEEEEeec-cCCCccccchhhhhhhhhhhHHHHHHHHhCCcEEEEeee
Q psy14299        322 NAVDCSRYFLSQISQRPGFRLVIPEF--QCT-NICFWFIP-VSLRDKVEDETWWSTLSKVAPRIKEKLVLGGTLMIGYQP  397 (448)
Q Consensus       322 ~~~~l~~~~~~~L~~~pg~~l~~~~~--~~~-~v~f~~~~-~~~~~~~~~~~~~~~~~~~~~~i~~~L~~~g~~~~~~~~  397 (448)
                      +..++++++++.|+++ |++++ .++  ..+ +++|.+.. ++.+               ..++.+.|.++| +.+.++.
T Consensus       269 ~~~~~~~~l~~~L~~~-g~~~~-~~~~~~~~~~~~~~~~~~~~~~---------------~~~l~~~L~~~g-i~v~~g~  330 (368)
T PRK13479        269 RYANNQRTLVAGMRAL-GFEPL-LDAEIQSPIIVTFHAPADPAYD---------------FKEFYERLKEQG-FVIYPGK  330 (368)
T ss_pred             HHHHHHHHHHHHHHHc-CCccc-CCchhcCceEEEEECCCCCCcC---------------HHHHHHHHHHCC-EEEecCC
Confidence            9999999999999998 88876 332  222 34454321 1111               137889999999 4454433


Q ss_pred             cCCcccccEEEEEecCCCCCCHHHHHHHHHHHHHHHHHhH
Q psy14299        398 LQHRNLHNFFRLVTTCHPASSRQDMDYAIDQIELRGAEVD  437 (448)
Q Consensus       398 ~~g~~~~~~lRis~~~~~~~t~edid~l~~al~~~~~~~~  437 (448)
                      ....   .++|++++  .+++++|+++++++|+++.++++
T Consensus       331 ~~~~---~~iRis~~--~~~t~edi~~~l~~L~~~l~~~~  365 (368)
T PRK13479        331 LTQV---DTFRIGCI--GDVDAADIRRLVAAIAEALYWMG  365 (368)
T ss_pred             CCCC---CEEEEecC--CCCCHHHHHHHHHHHHHHHHHcC
Confidence            2222   58999984  58999999999999999887643

>TIGR03301 PhnW-AepZ 2-aminoethylphosphonate aminotransferase

Probab=99.92  E-value=3.5e-23  Score=208.01  Aligned_cols=298  Identities=14%  Similarity=0.132  Sum_probs=202.5

Q ss_pred             cEEEeCcHHHHHHHHHHHHHHhcCCcccccCCCCCCCeEEEecCCCchH-HHHHHHHhCCCCCcEEEEecCCCCCcCHHH
Q psy14299          4 KPFLLPGGSISNMYSICLARYRLDPDTKRKGLSHLPPLCMFTSEDSHYS-MLKAAHWLGIGMDNVIRVKTNERGQMICSF   82 (448)
Q Consensus         4 ~g~~t~ggT~an~~al~~a~~~~~~~~~~~G~~~~~~~~Vl~~~~~H~s-~~~~~~~~g~~~~~v~~v~~~~~g~id~e~   82 (448)
                      ..++++|||+++..++.....+             ++.+++++...+.+ +...++..|.   +++.++.++++.+|+++
T Consensus        52 ~i~~~~~gt~~l~~~~~~~~~~-------------~~~vi~~~~~~~~~~~~~~a~~~g~---~~~~i~~~~~~~~d~~~  115 (355)
T TIGR03301        52 CVLLQGSGTFAVEATIGSLVPR-------------DGKLLVLINGAYGERLAKICEYLGI---PHTDLNFSEYEPPDLNR  115 (355)
T ss_pred             EEEEeCCcHHHHHHHHHhccCC-------------CCeEEEECCCchhhHHHHHHHHcCC---ceEEEecCCCCCCCHHH
Confidence            4568999999988887665432             33445555555544 5567778888   78889988788999999


Q ss_pred             HHHHHHHhhhcCCCcEEEEEeccCCccccccCHHHHHHHHHHcCCEEEEecccccccccccchhhhhcCCCCccEEEECC
Q psy14299         83 LEQTIQTSLAEKKIPLFVNATAGTTVLGAFDPLDEIATVCEKYDLWMHVDACWGGSLIFSEKYSFVLKGINRANSVSWNP  162 (448)
Q Consensus        83 Le~~l~~~~~~~~~~~lVv~~~~~t~tG~~~~l~~I~~ia~~~g~~l~VD~A~~~~~~~~~~~~~~~~~~~~aD~~~~s~  162 (448)
                      +++++++.    .+++++++++++|++|.+.|+++|+++|++||++++||++++.+..+.+     +... .+|+++.++
T Consensus       116 l~~~l~~~----~~~~~v~~~~~~~~~G~~~~~~~i~~l~~~~~~~livD~~~s~g~~~~~-----~~~~-~~d~~~~s~  185 (355)
T TIGR03301       116 IEEALAAD----PDITHVATVHHETTTGILNPLEAIAKVARSHGAVLIVDAMSSFGAIPID-----IEEL-DVDALIASA  185 (355)
T ss_pred             HHHHHHhC----CCceEEEEEecCCcccchhHHHHHHHHHHHcCCEEEEEeccccCCcccc-----hhhc-CccEEEecC
Confidence            99999752    3467888999999999999999999999999999999998887754332     1111 479999999


Q ss_pred             ccccCCCCceEEEEEeccchhhhhccCCcccccccCcccccccCCCCCcccCCCCchhHHHHHHHHHhChHHHHHHHHHh
Q psy14299        163 HKMLGAPLQCSILLIKEKGLLHQANATAATYLFQQDKFYDVSFDTGDKSVQCGRKVDAFKLWLMWKARGNLGFRHFVDNA  242 (448)
Q Consensus       163 hK~l~~P~g~G~l~vr~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~g~~~~i~~~  242 (448)
                      |||+++|.|+|+++++++ .+........++..+..                       ..|   .        . ..+ 
T Consensus       186 ~K~l~~~~G~g~~~~~~~-~~~~~~~~~~~~~~~~~-----------------------~~~---~--------~-~~~-  228 (355)
T TIGR03301       186 NKCLEGVPGFGFVIARRD-LLEASAGNARSLYLDLY-----------------------DQW---A--------Y-MEK-  228 (355)
T ss_pred             CcccccCCceeEEEECHH-HHHHhhCCCCCceeeHH-----------------------HHH---H--------H-hhh-
Confidence            999999999999998765 33332211111110000                       000   0        0 000 


Q ss_pred             hhhccCCCccchhhhhhhhhhhhhhhhhhhhhhhccccccccccCCCCCccccccchhhHHHHHHHHHhcCcc-HHHHHH
Q psy14299        243 VDCSRGSMTFSTLLCFDLQGLLHQANATAATYLFQQDKFYDVSFDTGDKSVQCGRKVDAFKLWLMWKARGNLG-FRHFVD  321 (448)
Q Consensus       243 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G-~~~~~~  321 (448)
                                                                    .+..-...+...+.++..+++....+| ++++.+
T Consensus       229 ----------------------------------------------~~~~~~t~~~~~~~a~~~al~~~~~~g~~~~~~~  262 (355)
T TIGR03301       229 ----------------------------------------------TGKWRFTPPTHTVYAFAQALEELEAEGGVPARIA  262 (355)
T ss_pred             ----------------------------------------------cCCCCCCCcHHHHHHHHHHHHHHHHcccHHHHHH
Confidence                                                          000001223444566667777776666 999999


Q ss_pred             HHHHHHHHHHHHhhcCCCeEEeccCCc--eee-EEEEeeccCCCccccchhhhhhhhhhhHHHHHHHHhCCcEEEEeeec
Q psy14299        322 NAVDCSRYFLSQISQRPGFRLVIPEFQ--CTN-ICFWFIPVSLRDKVEDETWWSTLSKVAPRIKEKLVLGGTLMIGYQPL  398 (448)
Q Consensus       322 ~~~~l~~~~~~~L~~~pg~~l~~~~~~--~~~-v~f~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~L~~~g~~~~~~~~~  398 (448)
                      +..++++++.+.|+++ |++++ .++.  .++ +.|.+ |....             ....++.+.|.++| +.+.+...
T Consensus       263 ~~~~~~~~~~~~L~~~-g~~~~-~~~~~~~~~~~~~~~-~~~~~-------------~~~~~~~~~l~~~g-i~i~~~~~  325 (355)
T TIGR03301       263 RYRRNRELLVDGLRAL-GFQPL-LPERWQSPIIVSFLY-PDDPD-------------FDFDDFYQELKERG-FVIYPGKL  325 (355)
T ss_pred             HHHHHHHHHHHHHHHc-CCeee-cCCCCCCCcEEEEEC-CCCCc-------------chHHHHHHHHHHCC-EEEECCcc
Confidence            9999999999999997 88876 3332  232 33332 21110             01137888999999 55554432


Q ss_pred             CCcccccEEEEEecCCCCCCHHHHHHHHHHHHHH
Q psy14299        399 QHRNLHNFFRLVTTCHPASSRQDMDYAIDQIELR  432 (448)
Q Consensus       399 ~g~~~~~~lRis~~~~~~~t~edid~l~~al~~~  432 (448)
                      ...   +++|+++  +.+++++|+++++++|+++
T Consensus       326 ~~~---~~iRis~--~~~~~~~~i~~~~~~l~~~  354 (355)
T TIGR03301       326 TLA---DTFRIGT--IGEIDAADIERLLEAIKDA  354 (355)
T ss_pred             ccc---cEEEEec--CCCCCHHHHHHHHHHHHhh
Confidence            222   6899999  5789999999999999864

This family includes a number of 2-aminoethylphosphonate aminotransferases, some of which are indicated to operate in the catabolism of 2-aminoethylphosphonate (AEP) and others which are involved in the biosynthesis of the same compound. The catabolic enzyme (PhnW, ) is known to use pyruvate:alanine as the transfer partner and is modeled by the equivalog-level alignment (TIGR02326). The PhnW family is apparently a branch of a larger tree including genes (AepZ) adjacent to others responsible for the biosynthesis of phosphonoacetaldehyde. The identity of the transfer partner is unknown for these enzymes and considering the reversed flux compared to PhnW, it may very well be different.

>PTZ00094 serine hydroxymethyltransferase; Provisional

Probab=99.92  E-value=1.3e-23  Score=218.57  Aligned_cols=288  Identities=13%  Similarity=0.155  Sum_probs=193.4

Q ss_pred             CcHHHHHHHHHHHHHHhcCCcccccCCCCCCCeEEEecCCCchHHHHHHHHhC-----CCC--CcEEEEecCCCCCcCHH
Q psy14299          9 PGGSISNMYSICLARYRLDPDTKRKGLSHLPPLCMFTSEDSHYSMLKAAHWLG-----IGM--DNVIRVKTNERGQMICS   81 (448)
Q Consensus         9 ~ggT~an~~al~~a~~~~~~~~~~~G~~~~~~~~Vl~~~~~H~s~~~~~~~~g-----~~~--~~v~~v~~~~~g~id~e   81 (448)
                      ++||++|+.++.+..+              +++.|++++.+|.+....+....     ...  -.+..++++.+|.+|++
T Consensus       107 ~sgt~an~~v~~al~~--------------~gd~Ii~~~~ehg~~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~g~id~~  172 (452)
T PTZ00094        107 YSGSPANFAVYTALLQ--------------PHDRIMGLDLPSGGHLTHGFYTAKKKVSATSIYFESLPYQVNEKGLIDYD  172 (452)
T ss_pred             CchHHHHHHHHHHhcC--------------CCCEEEecccccCCcccccccccccccccceeeeeeeecccCCCCCcCHH
Confidence            7899999998877633              56789999999988765542211     000  12445567778999999


Q ss_pred             HHHHHHHHhhhcCCCcEEEEEeccCCccccccCHHHHHHHHHHcCCEEEEecccccccccccchhhhhcCCCCccEEEEC
Q psy14299         82 FLEQTIQTSLAEKKIPLFVNATAGTTVLGAFDPLDEIATVCEKYDLWMHVDACWGGSLIFSEKYSFVLKGINRANSVSWN  161 (448)
Q Consensus        82 ~Le~~l~~~~~~~~~~~lVv~~~~~t~tG~~~~l~~I~~ia~~~g~~l~VD~A~~~~~~~~~~~~~~~~~~~~aD~~~~s  161 (448)
                      +|++.+++.     +|++|+++  .+.+|...|+++|+++||++|+++|||+||++|....+.....   +..+|+++++
T Consensus       173 ~L~~~l~~~-----~~~lvi~~--~s~~g~~~di~~I~~i~~~~ga~l~vDaaq~~G~i~~~~~~~~---~~~~D~l~~S  242 (452)
T PTZ00094        173 KLEELAKAF-----RPKLIIAG--ASAYPRDIDYKRFREICDSVGAYLMADIAHTSGLVAAGVLPSP---FPYADVVTTT  242 (452)
T ss_pred             HHHHHHHHh-----CCCEEEEe--CCCCCCccCHHHHHHHHHHcCCEEEEeccchhccccCCCCCCC---CCCCcEEEcC
Confidence            999999752     35666654  3459999999999999999999999999999999866543221   2258999999


Q ss_pred             CccccCCCCceEEEEEeccchhhhhccCCcccccccCcccccccCCCCCcccCCCCchhHHHHHHHHHhChHHHHHHHHH
Q psy14299        162 PHKMLGAPLQCSILLIKEKGLLHQANATAATYLFQQDKFYDVSFDTGDKSVQCGRKVDAFKLWLMWKARGNLGFRHFVDN  241 (448)
Q Consensus       162 ~hK~l~~P~g~G~l~vr~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~g~~~~i~~  241 (448)
                      +||||++|.| |+++++++ ............++.              .+.++                          
T Consensus       243 ~hK~l~GP~G-g~l~~~~~-~~~~l~~~~~~~~~p--------------~~~G~--------------------------  280 (452)
T PTZ00094        243 THKSLRGPRS-GLIFYRKK-VKPDIENKINEAVFP--------------GLQGG--------------------------  280 (452)
T ss_pred             CccCCCCCCc-eEEEEecc-cchHHHHhhccccCC--------------CCCCC--------------------------
Confidence            9999999998 77777654 222111000000000              00000                          


Q ss_pred             hhhhccCCCccchhhhhhhhhhhhhhhhhhhhhhhccccccccccCCCCCccccccchhhHHHHHHHHHhcCccHHHHHH
Q psy14299        242 AVDCSRGSMTFSTLLCFDLQGLLHQANATAATYLFQQDKFYDVSFDTGDKSVQCGRKVDAFKLWLMWKARGNLGFRHFVD  321 (448)
Q Consensus       242 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~  321 (448)
                                                                            .....+.++..++++....+++++.+
T Consensus       281 ------------------------------------------------------~~~~~iaal~~al~~~~~~~~~~~~~  306 (452)
T PTZ00094        281 ------------------------------------------------------PHNHQIAAIAVQLKEVQSPEWKEYAK  306 (452)
T ss_pred             ------------------------------------------------------chHHHHHHHHHHHHHHhChhHHHHHH
Confidence                                                                  00122445566777777788899999


Q ss_pred             HHHHHHHHHHHHhhcCCCeEEeccCCceeeEEEEeeccCCCccccchhhhhhhhhhhHHHHHHHHhCCcEEEE-eeecCC
Q psy14299        322 NAVDCSRYFLSQISQRPGFRLVIPEFQCTNICFWFIPVSLRDKVEDETWWSTLSKVAPRIKEKLVLGGTLMIG-YQPLQH  400 (448)
Q Consensus       322 ~~~~l~~~~~~~L~~~pg~~l~~~~~~~~~v~f~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~L~~~g~~~~~-~~~~~g  400 (448)
                      +..++++++.+.|++. |++++.+......+.+.+...++.               ...+...|.+.| +++. ...+.+
T Consensus       307 ~i~~l~~~l~~~L~~~-g~~v~~~~~~~~~~~v~~~~~~~~---------------~~~~~~~L~~~g-I~vs~~~~p~~  369 (452)
T PTZ00094        307 QVLKNAKALAAALEKR-GYDLVTGGTDNHLVLVDLRPFGIT---------------GSKMEKLLDAVN-ISVNKNTIPGD  369 (452)
T ss_pred             HHHHHHHHHHHHHHhC-CcEEecCCCCCceEeecCCcCCCC---------------HHHHHHHHHHCC-cEEecccCCCC
Confidence            9999999999999986 999872111223333333222222               135667776778 5553 222221


Q ss_pred             c--ccccEEEEEecCCCCCC----HHHHHHHHHHHHHHHHH
Q psy14299        401 R--NLHNFFRLVTTCHPASS----RQDMDYAIDQIELRGAE  435 (448)
Q Consensus       401 ~--~~~~~lRis~~~~~~~t----~edid~l~~al~~~~~~  435 (448)
                      .  ..++++|+|+  |++||    ++||++++++|.++.+.
T Consensus       370 ~~~~~~~~vRis~--~~~tt~g~~~~di~~l~~~l~~~~~~  408 (452)
T PTZ00094        370 KSALNPSGVRLGT--PALTTRGAKEKDFKFVADFLDRAVKL  408 (452)
T ss_pred             CcCCCCCeEEECC--HHHHhCCCCHHHHHHHHHHHHHHHHH
Confidence            1  1136899999  78987    99999999999998875

>KOG1549|consensus

Probab=99.92  E-value=7.9e-24  Score=209.91  Aligned_cols=154  Identities=19%  Similarity=0.236  Sum_probs=129.8

Q ss_pred             cEEEeCcHHHHHHHHHHHHHHhcCCcccccCCCCCCCeEEEecCCCchHHHHHHHHhCCCCCcEEEEecCCCCCcCHHHH
Q psy14299          4 KPFLLPGGSISNMYSICLARYRLDPDTKRKGLSHLPPLCMFTSEDSHYSMLKAAHWLGIGMDNVIRVKTNERGQMICSFL   83 (448)
Q Consensus         4 ~g~~t~ggT~an~~al~~a~~~~~~~~~~~G~~~~~~~~Vl~~~~~H~s~~~~~~~~g~~~~~v~~v~~~~~g~id~e~L   83 (448)
                      +.+||+|+||||.+++..--+...    + +    .+..|++...+|.++.++|+.+--....++.+|.+.++.+|.+.+
T Consensus       104 dIiFts~ATEs~Nlvl~~v~~~~~----~-~----~~k~iitl~~eH~~v~~s~~~l~~~g~~Vt~lpv~~~~~~d~~~~  174 (428)
T KOG1549|consen  104 DIVFTSGATESNNLVLKGVARFFG----D-K----TKKHIITLQTEHPCVLDSCRALQEEGLEVTYLPVEDSGLVDISKL  174 (428)
T ss_pred             cEEEeCCchHHHHHHHHHhhcccc----c-c----ccceEEEecccCcchhHHHHHHHhcCeEEEEeccCccccccHHHH
Confidence            479999999998888754333211    1 1    122788899999999999987633223799999999999999999


Q ss_pred             HHHHHHhhhcCCCcEEEEEeccCCccccccCHHHHHHHHHHcCCEEEEecccccccccccchhhhhcCCCCccEEEECCc
Q psy14299         84 EQTIQTSLAEKKIPLFVNATAGTTVLGAFDPLDEIATVCEKYDLWMHVDACWGGSLIFSEKYSFVLKGINRANSVSWNPH  163 (448)
Q Consensus        84 e~~l~~~~~~~~~~~lVv~~~~~t~tG~~~~l~~I~~ia~~~g~~l~VD~A~~~~~~~~~~~~~~~~~~~~aD~~~~s~h  163 (448)
                      ++.|++      +|++|.+.+.+++.|+++|++||+++||++|+.+|+|+||+.|..++|...     + .+|++++++|
T Consensus       175 ~~~i~~------~T~lv~I~~Vnn~~gv~~Pv~EI~~icr~~~v~v~~DaAQavG~i~vDV~e-----l-n~D~~s~s~H  242 (428)
T KOG1549|consen  175 REAIRS------KTRLVSIMHVNNEIGVLQPVKEIVKICREEGVQVHVDAAQAVGKIPVDVQE-----L-NADFLSISAH  242 (428)
T ss_pred             HHhcCC------CceEEEEEecccCccccccHHHHHHHhCcCCcEEEeehhhhcCCccccHHH-----c-Cchheeeecc
Confidence            999976      699999999999999999999999999999999999999999999877533     3 4899999999


Q ss_pred             cccCCCCceEEEEEec
Q psy14299        164 KMLGAPLQCSILLIKE  179 (448)
Q Consensus       164 K~l~~P~g~G~l~vr~  179 (448)
                      ||++.|+ +|+||+|.
T Consensus       243 K~ygp~~-iGaLYvr~  257 (428)
T KOG1549|consen  243 KIYGPPG-IGALYVRR  257 (428)
T ss_pred             cccCCCc-ceEEEEcc
Confidence            9998666 99999987

>cd00613 GDC-P Glycine cleavage system P-protein, alpha- and beta-subunits

Probab=99.92  E-value=2.9e-23  Score=212.37  Aligned_cols=308  Identities=13%  Similarity=0.081  Sum_probs=193.6

Q ss_pred             cEEEeCcHHHHHHHHHHHHHHhcCCcccccCCCCCCCeEEEecCCCchHHHHHHHHhCC-CCCcEEEEecCCCCCcCHHH
Q psy14299          4 KPFLLPGGSISNMYSICLARYRLDPDTKRKGLSHLPPLCMFTSEDSHYSMLKAAHWLGI-GMDNVIRVKTNERGQMICSF   82 (448)
Q Consensus         4 ~g~~t~ggT~an~~al~~a~~~~~~~~~~~G~~~~~~~~Vl~~~~~H~s~~~~~~~~g~-~~~~v~~v~~~~~g~id~e~   82 (448)
                      .++++++|+.+...++..++...           .+++.|++++..|.++..++...+. ...+++.++.++++.+|+++
T Consensus        83 ~v~~~~~g~~~~~~~~~~~~~~~-----------~~gd~Vl~~~~~h~~~~~~~~~~~~~~g~~~~~v~~~~~~~~d~~~  151 (398)
T cd00613          83 NASLQDEATAAAEAAGLAAIRAY-----------HKRNKVLVPDSAHPTNPAVARTRGEPLGIEVVEVPSDEGGTVDLEA  151 (398)
T ss_pred             ceeccCchHHHHHHHHHHHHhcc-----------cCCCEEEEcCccCcchHHHHHHhcccCCcEEEEeccCCCCCcCHHH
Confidence            35677777765554444444320           1367899999999999999988871 11168889988778899999


Q ss_pred             HHHHHHHhhhcCCCcEEEEEeccCCccccccCH-HHHHHHHHHcCCEEEEecccccccccccchhhhhcCCCCccEEEEC
Q psy14299         83 LEQTIQTSLAEKKIPLFVNATAGTTVLGAFDPL-DEIATVCEKYDLWMHVDACWGGSLIFSEKYSFVLKGINRANSVSWN  161 (448)
Q Consensus        83 Le~~l~~~~~~~~~~~lVv~~~~~t~tG~~~~l-~~I~~ia~~~g~~l~VD~A~~~~~~~~~~~~~~~~~~~~aD~~~~s  161 (448)
                      +++++.+      ++++|++++++ ++|.+.|+ ++|+++|++||+++++|++|+.+..+.+...      ..+|+++.+
T Consensus       152 l~~~i~~------~t~~viv~~~~-~~G~~~~~l~~i~~la~~~g~~livD~~~~~~~~~~~~~~------~~~d~~~~s  218 (398)
T cd00613         152 LKEEVSE------EVAALMVQYPN-TLGVFEDLIKEIADIAHSAGALVYVDGDNLNLTGLKPPGE------YGADIVVGN  218 (398)
T ss_pred             HHHhcCC------CeEEEEEECCC-CCceecchHHHHHHHHHhcCCEEEEEeccccccCCCChHH------cCCCEEEee
Confidence            9998854      47889999886 68999885 9999999999999999999876554333211      147999999


Q ss_pred             CccccCCC-----CceEEEEEeccchhhhhccCCcccccccCcccccccCCCCCcccCCCCchhHHHHHHHHHhChHHHH
Q psy14299        162 PHKMLGAP-----LQCSILLIKEKGLLHQANATAATYLFQQDKFYDVSFDTGDKSVQCGRKVDAFKLWLMWKARGNLGFR  236 (448)
Q Consensus       162 ~hK~l~~P-----~g~G~l~vr~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~g~~  236 (448)
                      +|||+ .|     +++|+++++++ +..........+.....       ....+.+....+               ....
T Consensus       219 ~~K~~-~p~g~Ggp~~g~l~~~~~-~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~---------------~~~~  274 (398)
T cd00613         219 LQKTG-VPHGGGGPGAGFFAVKKE-LVRFLPGRLVGVTKDAE-------GNRAFRLALQTR---------------EQHI  274 (398)
T ss_pred             ccccC-CCCCCCCCceeEEEEhhh-hHhhCCCCeeccccccC-------CCcceEEecccc---------------hhhc
Confidence            99999 66     45778887653 33321110000100000       000000000000               0000


Q ss_pred             HHHHHhhhhccCCCccchhhhhhhhhhhhhhhhhhhhhhhccccccccccCCCCCccccc-cchhhHHHHHHHHHhcCcc
Q psy14299        237 HFVDNAVDCSRGSMTFSTLLCFDLQGLLHQANATAATYLFQQDKFYDVSFDTGDKSVQCG-RKVDAFKLWLMWKARGNLG  315 (448)
Q Consensus       237 ~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~G  315 (448)
                      ++ +                                                .+....++ .......++.++..++.+|
T Consensus       275 r~-e------------------------------------------------~~~~~~~~~~~~~~~~a~~~l~~~~~~g  305 (398)
T cd00613         275 RR-E------------------------------------------------KATSNICTGQALLALMAAMYIVYLGPEG  305 (398)
T ss_pred             cc-c------------------------------------------------cccccceecHHHHHHHHHHHHHHhCHHH
Confidence            00 0                                                00000000 1223344556677788899


Q ss_pred             HHHHHHHHHHHHHHHHHHhhcCCCeEEeccCCceeeEEEEeeccCCCccccchhhhhhhhhhhHHHHHHHHhCCcEEEEe
Q psy14299        316 FRHFVDNAVDCSRYFLSQISQRPGFRLVIPEFQCTNICFWFIPVSLRDKVEDETWWSTLSKVAPRIKEKLVLGGTLMIGY  395 (448)
Q Consensus       316 ~~~~~~~~~~l~~~~~~~L~~~pg~~l~~~~~~~~~v~f~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~L~~~g~~~~~~  395 (448)
                      ++++.++..+++++++++|+++++.... ..+..+.+.|.+...  .            +....++.+.|.++|+ ++..
T Consensus       306 ~~~~~~~~~~~~~~l~~~L~~~~~~~~~-~~~~~~~v~~~~~~~--~------------~~~~~~~~~~L~~~gi-~~~~  369 (398)
T cd00613         306 LKEIAERAHLNANYLAKRLKEVGGVLPF-NGPFFHEFVLRLPPL--Y------------GIRAEDLAKALIDGGF-HAPT  369 (398)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhcCCcccC-CCCeeEEEEEEcCCc--c------------hHHHHHHHHhhhhcCc-cccc
Confidence            9999999999999999999998655422 233445555543210  0            0012478888999884 3332


Q ss_pred             eecCCcccccEEEEEecCCCCCCHHHHHHHHHHH
Q psy14299        396 QPLQHRNLHNFFRLVTTCHPASSRQDMDYAIDQI  429 (448)
Q Consensus       396 ~~~~g~~~~~~lRis~~~~~~~t~edid~l~~al  429 (448)
                      ..+.+.   +.+|+++  |.++|++|||+++++|
T Consensus       370 ~~~~~~---~~lRis~--~~~~t~edid~~~~~L  398 (398)
T cd00613         370 MYLPVD---GTLMIEP--TETETKEELDALLEAL  398 (398)
T ss_pred             cccCCC---CeEEEEc--CCCCCHHHHHHHHHhC
Confidence            212233   7899999  8999999999999875

This family consists of Glycine cleavage system P-proteins EC:1.4.4.2 from bacterial, mammalian and plant sources. The P protein is part of the glycine decarboxylase multienzyme complex EC:2.1.2.10 (GDC) also annotated as glycine cleavage system or glycine synthase. GDC consists of four proteins P, H, L and T. The reaction catalysed by this protein is: Glycine + lipoylprotein <= S-aminomethyldihydrolipoylprotein + CO2. Alpha-beta-type dimers associate to form an alpha(2)beta(2) tetramer, where the alpha- and beta-subunits are structurally similar and appear to have arisen by gene duplication and subsequent divergence with a loss of one active site. The members of this CD are widely dispersed among all three forms of cellular life.

>cd06452 SepCysS Sep-tRNA:Cys-tRNA synthase

Probab=99.92  E-value=3e-22  Score=202.54  Aligned_cols=158  Identities=17%  Similarity=0.174  Sum_probs=129.5

Q ss_pred             cEEEeCcHHHHHHHHHHHHHHhcCCcccccCCCCCCCeEEEecCCCchHHHHHHHHhCCCCCcEEEEecCCCC--CcCHH
Q psy14299          4 KPFLLPGGSISNMYSICLARYRLDPDTKRKGLSHLPPLCMFTSEDSHYSMLKAAHWLGIGMDNVIRVKTNERG--QMICS   81 (448)
Q Consensus         4 ~g~~t~ggT~an~~al~~a~~~~~~~~~~~G~~~~~~~~Vl~~~~~H~s~~~~~~~~g~~~~~v~~v~~~~~g--~id~e   81 (448)
                      ..++|+|+|+++..++.+...              +++.|+++..+|++...+++..|+   +++.++.++++  .+|++
T Consensus        61 ~i~~~~g~t~al~~~l~~~~~--------------~gd~Vl~~~~~~~~~~~~~~~~g~---~~~~v~~~~~~~~~~d~~  123 (361)
T cd06452          61 EARVTPGAREGKFAVMHSLCE--------------KGDWVVVDGLAHYTSYVAAERAGL---NVREVPNTGHPEYHITPE  123 (361)
T ss_pred             eEEEeCCHHHHHHHHHHHhcC--------------CCCEEEEcCCcchHHHHHHHhcCC---EEEEEecCCCCCcccCHH
Confidence            478999999998888766543              567799999999999988888888   78899988665  89999


Q ss_pred             HHHHHHHHhhhc-CCCcEEEEEeccCCccccccCHHHHHHHHHHcCCEEEEecccccccccccchhhhhcCCCCccEEEE
Q psy14299         82 FLEQTIQTSLAE-KKIPLFVNATAGTTVLGAFDPLDEIATVCEKYDLWMHVDACWGGSLIFSEKYSFVLKGINRANSVSW  160 (448)
Q Consensus        82 ~Le~~l~~~~~~-~~~~~lVv~~~~~t~tG~~~~l~~I~~ia~~~g~~l~VD~A~~~~~~~~~~~~~~~~~~~~aD~~~~  160 (448)
                      ++++++++..+. +.++++|++++++|++|...|+++|.++||++|++++||+||+.+..+.+...     . .+|+++.
T Consensus       124 ~l~~~l~~~~~~~~~~~~lv~l~~p~n~tG~~~~~~~i~~~~~~~~~~vivD~a~~~g~~~~~~~~-----~-~~d~~~~  197 (361)
T cd06452         124 GYAEVIEEVKDEFGKPPALALLTHVDGNYGNLHDAKKIAKVCHEYGVPLLLNGAYTVGRMPVSGKE-----L-GADFIVG  197 (361)
T ss_pred             HHHHHHHHHhhccCCCceEEEEECCCCCCeeeccHHHHHHHHHHcCCeEEEECCcccCCcCCCHHH-----c-CCCEEEe
Confidence            999999753221 23588999999999999999999999999999999999999998765433211     1 3799999


Q ss_pred             CCccccCCCCceEEEEEeccchhhh
Q psy14299        161 NPHKMLGAPLQCSILLIKEKGLLHQ  185 (448)
Q Consensus       161 s~hK~l~~P~g~G~l~vr~~~~~~~  185 (448)
                      ++||++++|.++|+++++++ +...
T Consensus       198 s~~K~l~~~~~~G~l~~~~~-~~~~  221 (361)
T cd06452         198 SGHKSMAASAPIGVLATTEE-WADI  221 (361)
T ss_pred             cCCccccCCCCeEEEEECHH-HHHH
Confidence            99999999999999888653 4444

This family belongs to the pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). Cys-tRNA(Cys) is produced by O-phosphoseryl-tRNA synthetase which ligates O-phosphoserine (Sep) to tRNA(Cys), and Sep-tRNA:Cys-tRNA synthase (SepCysS) converts Sep-tRNA(Cys) to Cys-tRNA(Cys), in methanogenic archaea. SepCysS forms a dimer, each monomer is composed of a large and small domain; the larger, a typical pyridoxal 5'-phosphate (PLP)-dependent-like enzyme fold. In the active site of each monomer, PLP is covalently bound to a conserved Lys residue near the dimer interface.

>PRK03080 phosphoserine aminotransferase; Provisional

Probab=99.92  E-value=2.3e-23  Score=212.00  Aligned_cols=301  Identities=10%  Similarity=0.071  Sum_probs=194.7

Q ss_pred             cEEEeC-cHHHHHHHHHHHHHHhcCCcccccCCCCCCCeEEEecCCCchHHHHH--HHHhCCCCCcEEEEecCCCCCcCH
Q psy14299          4 KPFLLP-GGSISNMYSICLARYRLDPDTKRKGLSHLPPLCMFTSEDSHYSMLKA--AHWLGIGMDNVIRVKTNERGQMIC   80 (448)
Q Consensus         4 ~g~~t~-ggT~an~~al~~a~~~~~~~~~~~G~~~~~~~~Vl~~~~~H~s~~~~--~~~~g~~~~~v~~v~~~~~g~id~   80 (448)
                      .++|++ |||+++..++....+.             ++..|+. ..+|.+....  ++..|+.  +++.++.++++.+|+
T Consensus        68 ~v~~~~gs~T~~~~~~~~~l~~~-------------~~~~vi~-~g~f~~~~~~~~~~~~g~~--~v~~~~~~~g~~~d~  131 (378)
T PRK03080         68 EVGIVPGSDTGAWEMALWSLLGA-------------RRVDHLA-WESFGSKWATDVVKQLKLE--DPRVLEADYGSLPDL  131 (378)
T ss_pred             eEEEECCchHHHHHHHHHhcCCC-------------CcceEEE-eCHHHHHHHHHHHhhcCCC--CceEeccCCCCCCCH
Confidence            578886 8888866665443211             2334444 4688774432  3445541  477788777778887


Q ss_pred             HHHHHHHHHhhhcCCCcEEEEEeccCCccccccCHHHHHHHHHHcCCEEEEecccccccccccchhhhhcCCCCccEEEE
Q psy14299         81 SFLEQTIQTSLAEKKIPLFVNATAGTTVLGAFDPLDEIATVCEKYDLWMHVDACWGGSLIFSEKYSFVLKGINRANSVSW  160 (448)
Q Consensus        81 e~Le~~l~~~~~~~~~~~lVv~~~~~t~tG~~~~l~~I~~ia~~~g~~l~VD~A~~~~~~~~~~~~~~~~~~~~aD~~~~  160 (448)
                      ++++    .       ++.|.++|.+|.||.+.|+++|++  |+||++++||++|+.|..+++..        .+|++++
T Consensus       132 ~~i~----~-------~~~V~~~h~~t~tG~~~pi~~I~~--~~~g~~~vVDa~qs~G~~pidv~--------~iD~~~~  190 (378)
T PRK03080        132 SAVD----F-------DRDVVFTWNGTTTGVRVPVARWIG--ADREGLTICDATSAAFALPLDWS--------KLDVYTF  190 (378)
T ss_pred             hhcC----C-------CCCEEEEecCCccceeccchhhcc--ccCCCeEEEecccccccCCCCHH--------HCcEEEE
Confidence            7632    1       346999999999999999999999  88999999999999999987743        2599999


Q ss_pred             CCccccCCCCceEEEEEeccchhhhhccCCcccccccCcccccccCCCCCcccCCCCchhHHHHHHHHHhChHHHHHHHH
Q psy14299        161 NPHKMLGAPLQCSILLIKEKGLLHQANATAATYLFQQDKFYDVSFDTGDKSVQCGRKVDAFKLWLMWKARGNLGFRHFVD  240 (448)
Q Consensus       161 s~hK~l~~P~g~G~l~vr~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~g~~~~i~  240 (448)
                      ++||||++|.|+|+++++++. +....+...++..      +..+++..                        +.. .++
T Consensus       191 s~~K~l~~P~G~g~l~v~~~~-~~~~~p~~~~~~~------~~~~~~~~------------------------~~~-~~~  238 (378)
T PRK03080        191 SWQKVLGGEGGHGMAILSPRA-VERLESYTPARPI------PKFFRLTK------------------------GGK-AIE  238 (378)
T ss_pred             ehhhhCCCCCceEEEEECHHH-HHhhhcccCCCCC------chhheecc------------------------chH-Hhh
Confidence            999999999999999998763 3332211111000      00000000                        000 000


Q ss_pred             HhhhhccCCCccchhhhhhhhhhhhhhhhhhhhhhhccccccccccCCCCCccccccchhhHHHHHHHHHhcCc-cHHHH
Q psy14299        241 NAVDCSRGSMTFSTLLCFDLQGLLHQANATAATYLFQQDKFYDVSFDTGDKSVQCGRKVDAFKLWLMWKARGNL-GFRHF  319 (448)
Q Consensus       241 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-G~~~~  319 (448)
                      ..                                 |            ......-.+...+.++..+++++.++ |++.+
T Consensus       239 ~~---------------------------------~------------~~~t~~tp~i~~i~~l~~al~~l~~~gG~e~i  273 (378)
T PRK03080        239 NS---------------------------------F------------KGQTINTPSMLTVEDYLDQLDWANSIGGLDAL  273 (378)
T ss_pred             hh---------------------------------h------------cCCcccCchHHHHHHHHHHHHHHHHcCCHHHH
Confidence            00                                 0            00000112244456667899999888 89999


Q ss_pred             HHHHHHHHHHHHHHhhcCCCeEEeccCC--ce-eeEEEEeeccCCCccccchhhhhhhhhhhHHHHHHHHhCCcEEEEee
Q psy14299        320 VDNAVDCSRYFLSQISQRPGFRLVIPEF--QC-TNICFWFIPVSLRDKVEDETWWSTLSKVAPRIKEKLVLGGTLMIGYQ  396 (448)
Q Consensus       320 ~~~~~~l~~~~~~~L~~~pg~~l~~~~~--~~-~~v~f~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~L~~~g~~~~~~~  396 (448)
                      .+|...+++++++.|+++++++++...+  +. ++++|++..  .+            ......+...|.+++++ +..+
T Consensus       274 ~~r~~~l~~~l~~~l~~~~~~~~~~~~~~~~s~~i~~~~~~~--~~------------~~~~~~~~~~l~~~~i~-v~~g  338 (378)
T PRK03080        274 IARTAANASVLYDWAEKTPWATPLVADPATRSNTSVTLDFVD--AQ------------AAVDAAAVAKLLRENGA-VDIE  338 (378)
T ss_pred             HHHHHHHHHHHHHHHHhCCCcccccCCccccCccEEEEEcCC--ch------------HHHHHHHHHHHHHcCCe-eccc
Confidence            9999999999999999997788762112  23 466665321  00            00112456667677643 3322


Q ss_pred             ecCCcccccEEEEEecCCCCCCHHHHHHHHHHHHHHHHHhH
Q psy14299        397 PLQHRNLHNFFRLVTTCHPASSRQDMDYAIDQIELRGAEVD  437 (448)
Q Consensus       397 ~~~g~~~~~~lRis~~~~~~~t~edid~l~~al~~~~~~~~  437 (448)
                      .+..  ..+.+|+|+  |.|||++||++++++|+++.++..
T Consensus       339 ~~~~--~~~~vRis~--~~~~t~~di~~l~~al~~~~~~~~  375 (378)
T PRK03080        339 PYRD--APNGLRIWC--GPTVEPADVEALTPWLDWAFERLK  375 (378)
T ss_pred             cccC--CCCcEEEec--CCCCCHHHHHHHHHHHHHHHHHHh
Confidence            1111  126899999  789999999999999999876543

>PRK00451 glycine dehydrogenase subunit 1; Validated

Probab=99.91  E-value=1.1e-22  Score=211.59  Aligned_cols=304  Identities=16%  Similarity=0.149  Sum_probs=195.4

Q ss_pred             cEEEeCcHHHHHHHHHHHHHHhcCCcccccCCCCCCCeEEEecCCCchHHHHHHHH----hCCCCCcEEEEecCCCCCcC
Q psy14299          4 KPFLLPGGSISNMYSICLARYRLDPDTKRKGLSHLPPLCMFTSEDSHYSMLKAAHW----LGIGMDNVIRVKTNERGQMI   79 (448)
Q Consensus         4 ~g~~t~ggT~an~~al~~a~~~~~~~~~~~G~~~~~~~~Vl~~~~~H~s~~~~~~~----~g~~~~~v~~v~~~~~g~id   79 (448)
                      .+++|+|||+++..++.+.+..             +++.|++++.+|.++...++.    .|+   +++.+|.+++ .+|
T Consensus       131 ~v~~~~g~t~~~~~~~~a~~~~-------------~g~~Vlv~~~~~~~~~~~~~~~~~~~G~---~~~~v~~~~~-~~d  193 (447)
T PRK00451        131 NASMYDGATALAEAALMAVRIT-------------KRKKVLVSGAVHPEYREVLKTYLKGQGI---EVVEVPYEDG-VTD  193 (447)
T ss_pred             eEEecCcHHHHHHHHHHHHHhc-------------CCCEEEEeCccCHHHHHHHHHHHHhCCc---EEEEecCCCC-CCC
Confidence            4779999998655444433322             456788999999999988775    466   7899999888 999


Q ss_pred             HHHHHHHHHHhhhcCCCcEEEEEeccCCccccccCHHHHHHHHHHcCCEEEE--ecccccccccccchhhhhcCCCCccE
Q psy14299         80 CSFLEQTIQTSLAEKKIPLFVNATAGTTVLGAFDPLDEIATVCEKYDLWMHV--DACWGGSLIFSEKYSFVLKGINRANS  157 (448)
Q Consensus        80 ~e~Le~~l~~~~~~~~~~~lVv~~~~~t~tG~~~~l~~I~~ia~~~g~~l~V--D~A~~~~~~~~~~~~~~~~~~~~aD~  157 (448)
                      ++++++++.+      ++++|+++++ |++|.++|+++|+++||++|+|++|  |.. +.+.+..+       +...+|+
T Consensus       194 ~~~l~~~i~~------~t~~v~l~~p-n~tG~v~~l~~I~~~a~~~~~~~iv~~d~~-~~g~~~~~-------~~~~~D~  258 (447)
T PRK00451        194 LEALEAAVDD------DTAAVVVQYP-NFFGVIEDLEEIAEIAHAGGALFIVGVDPV-SLGLLKPP-------GEYGADI  258 (447)
T ss_pred             HHHHHHhcCC------CeEEEEEECC-CCCCeeCCHHHHHHHHHHCCCEEEEEcChH-HhccCCCc-------ccCCCCE
Confidence            9999999854      4788999987 7899999999999999999999998  543 23322111       1125899


Q ss_pred             EEECCccc-----cCCCCceEEEEEeccchhhhhccCCcccccccCcccccccCCCCCcccCCCCchhHHHHHHHHHhCh
Q psy14299        158 VSWNPHKM-----LGAPLQCSILLIKEKGLLHQANATAATYLFQQDKFYDVSFDTGDKSVQCGRKVDAFKLWLMWKARGN  232 (448)
Q Consensus       158 ~~~s~hK~-----l~~P~g~G~l~vr~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~  232 (448)
                      ++.++|||     +++| ++|+++++++ +....    ++.+..........   ..+.+....+               
T Consensus       259 ~~~s~~k~~~~~~~~Gp-g~G~l~~~~~-~~~~~----~~~~~g~~~~~~~~---~~~~~~~~~~---------------  314 (447)
T PRK00451        259 VVGEGQPLGIPLSFGGP-YLGFFATRKK-LVRQM----PGRLVGETVDADGK---RGFVLTLQAR---------------  314 (447)
T ss_pred             EEECCCcCCCCCCCCCC-CchHHHhhHH-HHhhC----CCCEeeeecccCCC---eeeEeecccc---------------
Confidence            99999997     5666 7999988664 33321    11111100000000   0000000000               


Q ss_pred             HHHHHHHHHhhhhccCCCccchhhhhhhhhhhhhhhhhhhhhhhccccccccccCCCCCccccccc-hhhHHHHHHHHHh
Q psy14299        233 LGFRHFVDNAVDCSRGSMTFSTLLCFDLQGLLHQANATAATYLFQQDKFYDVSFDTGDKSVQCGRK-VDAFKLWLMWKAR  311 (448)
Q Consensus       233 ~g~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~  311 (448)
                                                                       .+..-...+....|.+. ...++.+.++++.
T Consensus       315 -------------------------------------------------~~~~~~~~~~~~~~~~~~~~~~aaa~~l~~~  345 (447)
T PRK00451        315 -------------------------------------------------EQHIRREKATSNICTNQALNALAAAIYMSLL  345 (447)
T ss_pred             -------------------------------------------------ccccccccccccccccHHHHHHHHHHHHHHH
Confidence                                                             00000000111122222 2224555677888


Q ss_pred             cCccHHHHHHHHHHHHHHHHHHhhcCCCeEEeccCCceeeEEEEeeccCCCccccchhhhhhhhhhhHHHHHHHHhCCcE
Q psy14299        312 GNLGFRHFVDNAVDCSRYFLSQISQRPGFRLVIPEFQCTNICFWFIPVSLRDKVEDETWWSTLSKVAPRIKEKLVLGGTL  391 (448)
Q Consensus       312 ~~~G~~~~~~~~~~l~~~~~~~L~~~pg~~l~~~~~~~~~v~f~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~L~~~g~~  391 (448)
                      +.+|++++.++..++++++.++|++++|++++ ..+....+++.+ +  ..               ..++.++|.++|++
T Consensus       346 ~~~g~~~~~~~~~~~~~~l~~~L~~~~g~~~~-~~~~~~~~~v~~-~--~~---------------~~~~~~~L~~~gi~  406 (447)
T PRK00451        346 GPEGLRELAEQNHQKAHYLAERLAEIGGVELF-DGPFFNEFVVRL-P--KP---------------AEEVNEALLEKGIL  406 (447)
T ss_pred             CHHHHHHHHHHHHHHHHHHHHHHhhcCCEEec-CCCeEEEEEEec-C--CC---------------HHHHHHHHHhcCCC
Confidence            99999999999999999999999999999986 333333333432 1  11               13788999998854


Q ss_pred             EEEeeecCCcccccEEEEEecCCCCCCHHHHHHHHHHHHHHH
Q psy14299        392 MIGYQPLQHRNLHNFFRLVTTCHPASSRQDMDYAIDQIELRG  433 (448)
Q Consensus       392 ~~~~~~~~g~~~~~~lRis~~~~~~~t~edid~l~~al~~~~  433 (448)
                      ...+....+....+++|+|+  +.++|++|+++++++|+++.
T Consensus       407 ~~~~~~~~~~~~~~~~rvs~--~~~~t~e~i~~l~~~L~~~~  446 (447)
T PRK00451        407 GGYDLGRYYPELGNHLLVCV--TEKRTKEDIDALVAALGEVL  446 (447)
T ss_pred             CCcccccccCCcCCEEEEec--CCCCCHHHHHHHHHHHHHHh
Confidence            21111111111136899999  78999999999999998764

>TIGR03235 DNA_S_dndA cysteine desulfurase DndA

Probab=99.91  E-value=2.7e-22  Score=202.14  Aligned_cols=156  Identities=23%  Similarity=0.256  Sum_probs=126.0

Q ss_pred             cEEEeCcHHHHHHHHHHHHHHhcCCcccccCCCCCCCeEEEecCCCchHHHHHHHHhCCCCCcEEEEecCCCCCcCHHHH
Q psy14299          4 KPFLLPGGSISNMYSICLARYRLDPDTKRKGLSHLPPLCMFTSEDSHYSMLKAAHWLGIGMDNVIRVKTNERGQMICSFL   83 (448)
Q Consensus         4 ~g~~t~ggT~an~~al~~a~~~~~~~~~~~G~~~~~~~~Vl~~~~~H~s~~~~~~~~g~~~~~v~~v~~~~~g~id~e~L   83 (448)
                      .++||+|+|+++..++........    +     ..++.|+++..+|+++......+.....+++.++.++++.+|+++|
T Consensus        61 ~v~~~~g~t~a~~~~l~~l~~~~~----~-----~g~~~vi~~~~~~~s~~~~~~~~~~~G~~v~~v~~~~~~~~d~~~l  131 (353)
T TIGR03235        61 EVIFTSGATESNNLAILGLARAGE----Q-----KGKKHIITSAIEHPAVLEPIRALERNGFTVTYLPVDESGRIDVDEL  131 (353)
T ss_pred             eEEEeCCHHHHHHHHHHHHHHhcc----c-----CCCCeeeEcccccHHHHHHHHHHHhcCCEEEEEccCCCCcCCHHHH
Confidence            589999999998888766554200    0     0226789999999998877654322122789999988899999999


Q ss_pred             HHHHHHhhhcCCCcEEEEEeccCCccccccCHHHHHHHHHHcCCEEEEecccccccccccchhhhhcCCCCccEEEECCc
Q psy14299         84 EQTIQTSLAEKKIPLFVNATAGTTVLGAFDPLDEIATVCEKYDLWMHVDACWGGSLIFSEKYSFVLKGINRANSVSWNPH  163 (448)
Q Consensus        84 e~~l~~~~~~~~~~~lVv~~~~~t~tG~~~~l~~I~~ia~~~g~~l~VD~A~~~~~~~~~~~~~~~~~~~~aD~~~~s~h  163 (448)
                      ++.+++      ++++|++++++|++|.+.|+++|+++||++|+++|||++|+.+..+.+...      ..+|++++++|
T Consensus       132 ~~~l~~------~~~lv~~~~~~n~tG~~~~~~~I~~l~~~~~~~~ivD~a~~~g~~~~~~~~------~~~D~~~~s~~  199 (353)
T TIGR03235       132 ADAIRP------DTLLVSIMHVNNETGSIQPIREIAEVLEAHEAFFHVDAAQVVGKITVDLSA------DRIDLISCSGH  199 (353)
T ss_pred             HHhCCC------CCEEEEEEcccCCceeccCHHHHHHHHHHcCCEEEEEchhhcCCccccccc------cCCCEEEeehh
Confidence            998854      478999999999999999999999999999999999999999988655321      24899999999


Q ss_pred             cccCCCCceEEEEEeccc
Q psy14299        164 KMLGAPLQCSILLIKEKG  181 (448)
Q Consensus       164 K~l~~P~g~G~l~vr~~~  181 (448)
                      ||+ +|.|+|+++++++.
T Consensus       200 K~~-gp~g~g~l~~~~~~  216 (353)
T TIGR03235       200 KIY-GPKGIGALVIRKRG  216 (353)
T ss_pred             hcC-CCCceEEEEEccCc
Confidence            984 69999999998763

This model describes DndA, a protein related to IscS and part of a larger family of cysteine desulfurases. It is encoded, typically, divergently from a conserved, sparsely distributed operon for sulfur modification of DNA. This modification system is designated dnd, after the phenotype of DNA degradation during electrophoresis. The system is sporadically distributed in bacteria, much like some restriction enzyme operons. DndB is described as a putative ATPase.

>TIGR02539 SepCysS Sep-tRNA:Cys-tRNA synthase

Probab=99.91  E-value=1.5e-21  Score=198.23  Aligned_cols=159  Identities=16%  Similarity=0.133  Sum_probs=127.5

Q ss_pred             cEEEeCcHHHHHHHHHHHHHHhcCCcccccCCCCCCCeEEEecCCCchHHHHHHHHhCCCCCcEEEEecCC--CCCcCHH
Q psy14299          4 KPFLLPGGSISNMYSICLARYRLDPDTKRKGLSHLPPLCMFTSEDSHYSMLKAAHWLGIGMDNVIRVKTNE--RGQMICS   81 (448)
Q Consensus         4 ~g~~t~ggT~an~~al~~a~~~~~~~~~~~G~~~~~~~~Vl~~~~~H~s~~~~~~~~g~~~~~v~~v~~~~--~g~id~e   81 (448)
                      ...+++||+++|..++.+...              +++.|+++...|++...+++..|.   +++.+|+++  ++.+|++
T Consensus        68 ~~~i~~g~~~a~~~~~~~l~~--------------~gd~Vl~~~~~h~s~~~~~~~~g~---~~~~~~~~~~~~~~~d~~  130 (370)
T TIGR02539        68 EARVTHGAREGKFAVMHALCK--------------EGDWVVLDGLAHYTSYVAAERAGL---NVKEVPHTGHPEYKVDPE  130 (370)
T ss_pred             ceEEECChHHHHHHHHHHhhC--------------CCCEEEECCcccHHHHHHHHHcCC---EEEEEecCCcccCCcCHH
Confidence            356789999999888776543              567799999999999999988888   788899863  5789999


Q ss_pred             HHHHHHHHhhhc-CCCcEEEEEeccCCccccccCHHHHHHHHHHcCCEEEEecccccccccccchhhhhcCCCCccEEEE
Q psy14299         82 FLEQTIQTSLAE-KKIPLFVNATAGTTVLGAFDPLDEIATVCEKYDLWMHVDACWGGSLIFSEKYSFVLKGINRANSVSW  160 (448)
Q Consensus        82 ~Le~~l~~~~~~-~~~~~lVv~~~~~t~tG~~~~l~~I~~ia~~~g~~l~VD~A~~~~~~~~~~~~~~~~~~~~aD~~~~  160 (448)
                      +|++++++.... ..++++|+++++++++|.+.|+++|.++|++||++++||+||+.+....+..     .. .+|+++.
T Consensus       131 ~l~~~l~~~~~~~~~~~~lv~~~~p~~~~G~~~~l~~i~~la~~~~~~livDea~~~g~~~~~~~-----~~-~~di~v~  204 (370)
T TIGR02539       131 GYGEVIEEVEDESGKPPVLALLTHVDGEYGNLPDAGKVAKVCREKGVPLLLNCAYTVGRMPVSAK-----EI-GADFIVG  204 (370)
T ss_pred             HHHHHHHHhhhccCCCcEEEEEECCCCCCccccCHHHHHHHHHHcCCeEEEECccccCCcCCCHH-----Hc-CCCEEEe
Confidence            999999752211 1357899999999999999999999999999999999999999875433221     11 3799999


Q ss_pred             CCccccCCCCceEEEEEeccchhhhh
Q psy14299        161 NPHKMLGAPLQCSILLIKEKGLLHQA  186 (448)
Q Consensus       161 s~hK~l~~P~g~G~l~vr~~~~~~~~  186 (448)
                      ++||+++++.++|+++.++ ++....
T Consensus       205 s~sK~~~~~g~~G~l~~~~-~~i~~l  229 (370)
T TIGR02539       205 SGHKSMAASGPCGVLGMSE-EWEDIV  229 (370)
T ss_pred             eCcccccCCCCEEEEEECH-HHHhhh
Confidence            9999999877789888755 444443

Aminoacylation of tRNA(Cys) with Cys, and cysteine biosynthesis in the process, happens in Methanocaldococcus jannaschii and several other archaea by misacylation of tRNA(Cys) with O-phosphoserine (Sep), followed by modification of the phosphoserine to cysteine. In some species, direct tRNA-cys aminoacylation also occurs but this pathway is required for Cys biosynthesis. Members of this protein catalyze the second step in this two step pathway, using pyridoxal phosphate and a sulfur donor to synthesize Cys from Sep while attached to the tRNA.

>KOG1383|consensus

Probab=99.90  E-value=2.6e-22  Score=198.54  Aligned_cols=303  Identities=20%  Similarity=0.226  Sum_probs=229.3

Q ss_pred             ccEEEeCcHHHHHHHHHHHHHHhcCCcccccCCCCCCCeEEEecCCCchHHHHHHHHhCCCCCcEEEEecC-CCCCcCHH
Q psy14299          3 LKPFLLPGGSISNMYSICLARYRLDPDTKRKGLSHLPPLCMFTSEDSHYSMLKAAHWLGIGMDNVIRVKTN-ERGQMICS   81 (448)
Q Consensus         3 ~~g~~t~ggT~an~~al~~a~~~~~~~~~~~G~~~~~~~~Vl~~~~~H~s~~~~~~~~g~~~~~v~~v~~~-~~g~id~e   81 (448)
                      ..|..|+|||+|++++....+.+...   ..|+   ....++++...|.++.+.+++.++   +++.||.+ .+.++|+.
T Consensus       139 ~~g~~t~G~Ses~l~~~k~~~~~r~~---~k~I---~~p~iv~~~~v~~a~eK~a~yf~v---~l~~V~~~~~~~~~D~~  209 (491)
T KOG1383|consen  139 SCGCGTVGGSESGLAAKKSYRNRRKA---QKGI---DKPNIVTPQNVHAAFEKAARYFEV---ELREVPLDEGDYRVDPG  209 (491)
T ss_pred             ccCccccccchHHHHHHHHHHHHHHh---ccCC---CCccccchHHHHHHHHHHHhhEEE---EEEeeeccccceEecHH
Confidence            56788999999988877666654321   1243   234578899999999999999999   89999998 57799999


Q ss_pred             HHHHHHHHhhhcCCCcEEEEEeccCCccccccCHHHHHHHHHH-cCCEEEEeccccccccc-----ccchhhhhcCCCCc
Q psy14299         82 FLEQTIQTSLAEKKIPLFVNATAGTTVLGAFDPLDEIATVCEK-YDLWMHVDACWGGSLIF-----SEKYSFVLKGINRA  155 (448)
Q Consensus        82 ~Le~~l~~~~~~~~~~~lVv~~~~~t~tG~~~~l~~I~~ia~~-~g~~l~VD~A~~~~~~~-----~~~~~~~~~~~~~a  155 (448)
                      .+.+.+++      +++.|+.+.+++++|.++|+++|.++.-+ +++++|||++.|+...+     ..++++.+.   .+
T Consensus       210 k~~~~i~e------Nti~lv~~~~~~p~G~~e~ve~l~~l~~e~w~ipiHvDa~~GgFi~p~~~~~~~~fdFr~p---~V  280 (491)
T KOG1383|consen  210 KVVRMIDE------NTIMLVGSLPNFPTGEIEDVEKLADLLLEIWDIPIHVDACLGGFINPAGYLNEEEFDFRVP---GV  280 (491)
T ss_pred             HHHHHhcc------ceEEEEEEcCCCCccchhhHHHHHHHHHHHhCCceeecccCccccccccccCccccccCCC---Cc
Confidence            99999987      58999999999999999999999999999 99999999999987764     123444333   46


Q ss_pred             cEEEECCccccCCCCceEEEEEeccchhhhhccCCcccccccCcccccccCCCCCcccCCCCc-hhHHHHHHHHHhChHH
Q psy14299        156 NSVSWNPHKMLGAPLQCSILLIKEKGLLHQANATAATYLFQQDKFYDVSFDTGDKSVQCGRKV-DAFKLWLMWKARGNLG  234 (448)
Q Consensus       156 D~~~~s~hK~l~~P~g~G~l~vr~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~g~~g  234 (448)
                      -+++.++||...+|.|+|+++.|++..+...+-....|...         .+...++.++|+. .....|+++-.+|.+|
T Consensus       281 ~Sisa~~HKYGl~~~G~~~vl~r~k~~~~~q~~~~~~w~Gg---------~y~s~TlngSR~g~~va~~wa~~~~lG~eG  351 (491)
T KOG1383|consen  281 TSISADGHKYGLAPAGSSWVLYRNKELLPHQLFFHTDWLGG---------IYASPTLNGSRPGSQVAAQWAALMSLGEEG  351 (491)
T ss_pred             eeEeeccceeeeeecCcEEEEEcccccccceEEEeccccCc---------cccCcccccCCcccHHHHHHHHHHHhhHHH
Confidence            79999999999999999999999988765544334444432         3455677788875 4566888888888888


Q ss_pred             HHHHHHHhhhhccCCCccchhhhhhhhhhhhhhhhhhhhhhhccccccccccCCCCCccccccchhhHHHHHHHHHhcCc
Q psy14299        235 FRHFVDNAVDCSRGSMTFSTLLCFDLQGLLHQANATAATYLFQQDKFYDVSFDTGDKSVQCGRKVDAFKLWLMWKARGNL  314 (448)
Q Consensus       235 ~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  314 (448)
                      +++..++                                                                         
T Consensus       352 Y~~~~~~-------------------------------------------------------------------------  358 (491)
T KOG1383|consen  352 YRENTQN-------------------------------------------------------------------------  358 (491)
T ss_pred             HHHHHHH-------------------------------------------------------------------------
Confidence            8775555                                                                         


Q ss_pred             cHHHHHHHHHHHHHHHHHHhhcCCCeEEeccCCceeeEEEEeeccCCCccccchhhhhhhhhhhHHHHHHHHhCCcEEEE
Q psy14299        315 GFRHFVDNAVDCSRYFLSQISQRPGFRLVIPEFQCTNICFWFIPVSLRDKVEDETWWSTLSKVAPRIKEKLVLGGTLMIG  394 (448)
Q Consensus       315 G~~~~~~~~~~l~~~~~~~L~~~pg~~l~~~~~~~~~v~f~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~L~~~g~~~~~  394 (448)
                              +.+.++.+++.|++++++.++ .+|..+++.|.-.  .++               --++.+.|.+.||++-.
T Consensus       359 --------ive~~~~l~egie~i~~i~i~-gkp~vs~~~~~s~--~~~---------------i~elsd~l~~~GW~lna  412 (491)
T KOG1383|consen  359 --------IVETARKLREGIENIKGIKIV-GKPLVSFILFGSN--DVN---------------IFELSDLLRKKGWILNA  412 (491)
T ss_pred             --------HHHHHHHHHHhhhccccceec-CCCcEEEEEccCC--ccc---------------hhhhhHHHHhcCcCccc
Confidence                    445588899999999999999 7777776666311  111               12788999999988766


Q ss_pred             eeecCCcccccEEEEEecCCCCCCHHH-HHHHHHHHHHHHHHhHHh
Q psy14299        395 YQPLQHRNLHNFFRLVTTCHPASSRQD-MDYAIDQIELRGAEVDLE  439 (448)
Q Consensus       395 ~~~~~g~~~~~~lRis~~~~~~~t~ed-id~l~~al~~~~~~~~~~  439 (448)
                      .+.+.+      +-++++  -.+.++| .|+|+..|+++.+++...
T Consensus       413 lq~P~a------~Hi~vt--~~~~~~~~A~~~v~Di~~~~~el~~~  450 (491)
T KOG1383|consen  413 LQFPAA------IHICVT--RVHAREDVADRFVADIRKVVEELKSL  450 (491)
T ss_pred             cCCCCc------eEEEEE--eeeccHHHHHHHHHHHHHHHHHHHhC
Confidence            554433      445553  3334444 688999999988887653

>TIGR01822 2am3keto_CoA 2-amino-3-ketobutyrate coenzyme A ligase

Probab=99.90  E-value=3.2e-21  Score=197.06  Aligned_cols=288  Identities=16%  Similarity=0.176  Sum_probs=189.6

Q ss_pred             cEEEeCcHHHHHHHHHHHHHHhcCCcccccCCCCCCCeEEEecCCCchHHHHHHHHhCCCCCcEEEEecCCCCCcCHHHH
Q psy14299          4 KPFLLPGGSISNMYSICLARYRLDPDTKRKGLSHLPPLCMFTSEDSHYSMLKAAHWLGIGMDNVIRVKTNERGQMICSFL   83 (448)
Q Consensus         4 ~g~~t~ggT~an~~al~~a~~~~~~~~~~~G~~~~~~~~Vl~~~~~H~s~~~~~~~~g~~~~~v~~v~~~~~g~id~e~L   83 (448)
                      .+++++||++||..++.+..+              +++.|++++.+|+++..++++.+.   +...++     .+|+++|
T Consensus       100 ~~ii~~~~~~a~~~~~~~l~~--------------~gd~vi~~~~~~~s~~~~~~~~~~---~~~~~~-----~~d~~~l  157 (393)
T TIGR01822       100 DTILYASCFDANGGLFETLLG--------------AEDAIISDALNHASIIDGVRLCKA---KRYRYA-----NNDMADL  157 (393)
T ss_pred             cEEEECchHHHHHHHHHHhCC--------------CCCEEEEeccccHHHHHHHHhcCC---ceEEeC-----CCCHHHH
Confidence            467889999998866655422              677899999999999999888776   343333     3699999


Q ss_pred             HHHHHHhhhcCCCcEEEEEeccCCccccccCHHHHHHHHHHcCCEEEEecccccccccccchh-hhhcCC-CCccEEEEC
Q psy14299         84 EQTIQTSLAEKKIPLFVNATAGTTVLGAFDPLDEIATVCEKYDLWMHVDACWGGSLIFSEKYS-FVLKGI-NRANSVSWN  161 (448)
Q Consensus        84 e~~l~~~~~~~~~~~lVv~~~~~t~tG~~~~l~~I~~ia~~~g~~l~VD~A~~~~~~~~~~~~-~~~~~~-~~aD~~~~s  161 (448)
                      ++.+++..+.+.++++|++.+..+++|.+.|+++|+++|++||+++++|++|+.+........ ....++ ..+|+++.+
T Consensus       158 ~~~i~~~~~~~~~~~~v~~~~v~~~tG~~~~l~~i~~la~~~~~~li~De~~~~g~~~~~~~~~~~~~~~~~~~di~~~s  237 (393)
T TIGR01822       158 EAQLKEARAAGARHRLIATDGVFSMDGVIAPLDEICDLADKYDALVMVDECHATGFLGPTGRGSHELCGVMGRVDIITGT  237 (393)
T ss_pred             HHHHHhhhhcCCCceEEEEeCCccCCCCcCCHHHHHHHHHHcCCEEEEECCccccCcCCCCCchHHhcCCCCCCeEEEEE
Confidence            999986433333678999999999999999999999999999999999999987664221100 001111 247999999


Q ss_pred             CccccCCCCceEEEEEeccchhhhhccCCcccccccCcccccccCCCCCcccCCCCchhHHHHHHHHHhChHHHHHHHHH
Q psy14299        162 PHKMLGAPLQCSILLIKEKGLLHQANATAATYLFQQDKFYDVSFDTGDKSVQCGRKVDAFKLWLMWKARGNLGFRHFVDN  241 (448)
Q Consensus       162 ~hK~l~~P~g~G~l~vr~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~g~~~~i~~  241 (448)
                      +||+++++. .|+++.+ +.+..........+....                 +..  ...                   
T Consensus       238 ~sK~l~g~r-~G~~~~~-~~~~~~l~~~~~~~~~~~-----------------~~~--~~~-------------------  277 (393)
T TIGR01822       238 LGKALGGAS-GGFTTAR-KEVVELLRQRSRPYLFSN-----------------SLP--PAV-------------------  277 (393)
T ss_pred             ChHHhhCCC-cEEEEeC-HHHHHHHHHhCccceecC-----------------CCC--HHH-------------------
Confidence            999998764 5777664 344433322111221110                 000  000                   


Q ss_pred             hhhhccCCCccchhhhhhhhhhhhhhhhhhhhhhhccccccccccCCCCCccccccchhhHHHHHHHHHhcCccHHHHHH
Q psy14299        242 AVDCSRGSMTFSTLLCFDLQGLLHQANATAATYLFQQDKFYDVSFDTGDKSVQCGRKVDAFKLWLMWKARGNLGFRHFVD  321 (448)
Q Consensus       242 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~  321 (448)
                                                                                 +.+...+++..  ++.+++.+
T Consensus       278 -----------------------------------------------------------~~a~~~al~~~--~~~~~~~~  296 (393)
T TIGR01822       278 -----------------------------------------------------------VGASIKVLEML--EASNELRD  296 (393)
T ss_pred             -----------------------------------------------------------HHHHHHHHHHH--hcCHHHHH
Confidence                                                                       00111122222  13456778


Q ss_pred             HHHHHHHHHHHHhhcCCCeEEeccCCceeeEEEEeeccCCCccccchhhhhhhhhhhHHHHHHHHhCCcEEEEeeecC-C
Q psy14299        322 NAVDCSRYFLSQISQRPGFRLVIPEFQCTNICFWFIPVSLRDKVEDETWWSTLSKVAPRIKEKLVLGGTLMIGYQPLQ-H  400 (448)
Q Consensus       322 ~~~~l~~~~~~~L~~~pg~~l~~~~~~~~~v~f~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~L~~~g~~~~~~~~~~-g  400 (448)
                      +..++++++.+.|+++ |+++.  ++..+++.+.+.+ ..               ...++.+.|.++| +++...... .
T Consensus       297 ~~~~~~~~l~~~L~~~-g~~~~--~~~~~~~~i~~~~-~~---------------~~~~l~~~L~~~g-I~v~~~~~~~~  356 (393)
T TIGR01822       297 RLWANTRYFRERMEAA-GFDIK--PADHPIIPVMLYD-AV---------------LAQRFARRLLEEG-IYVTGFFYPVV  356 (393)
T ss_pred             HHHHHHHHHHHHHHHc-CCCCC--CCCCCEEEEEeCC-HH---------------HHHHHHHHHHHCC-eeEeeeCCCCC
Confidence            8889999999999986 88764  3334455443211 00               1247888999998 444432211 1


Q ss_pred             cccccEEEEEecCCCCCCHHHHHHHHHHHHHHHHHh
Q psy14299        401 RNLHNFFRLVTTCHPASSRQDMDYAIDQIELRGAEV  436 (448)
Q Consensus       401 ~~~~~~lRis~~~~~~~t~edid~l~~al~~~~~~~  436 (448)
                      ......+|+++  +.++|++||++++++|+++.+++
T Consensus       357 ~~~~~~iRis~--~~~~t~edi~~~~~~l~~~~~~~  390 (393)
T TIGR01822       357 PKGQARIRVQI--SAAHTEEQLDRAVEAFTRIGREL  390 (393)
T ss_pred             CCCCceEEEEE--CCCCCHHHHHHHHHHHHHHHHHh
Confidence            11125799999  78999999999999999987654

This model represents a narrowly defined clade of animal and bacterial (almost exclusively Proteobacterial) 2-amino-3-ketobutyrate--CoA ligase. This enzyme can act in threonine catabolism. The closest homolog from Bacillus subtilis, and sequences like it, may be functionally equivalent but were not included in the model because of difficulty in finding reports of function.

>TIGR03531 selenium_SpcS O-phosphoseryl-tRNA(Sec) selenium transferase

Probab=99.90  E-value=8.9e-22  Score=201.73  Aligned_cols=164  Identities=16%  Similarity=0.183  Sum_probs=122.9

Q ss_pred             cEEEeCcHH-HHHHHHHHHHHHhcCCcccccCCCCCCCeEEEecCCCchHHHHHHHHhCCCCCcEEEEec---CCCCCcC
Q psy14299          4 KPFLLPGGS-ISNMYSICLARYRLDPDTKRKGLSHLPPLCMFTSEDSHYSMLKAAHWLGIGMDNVIRVKT---NERGQMI   79 (448)
Q Consensus         4 ~g~~t~ggT-~an~~al~~a~~~~~~~~~~~G~~~~~~~~Vl~~~~~H~s~~~~~~~~g~~~~~v~~v~~---~~~g~id   79 (448)
                      .+++++||| +++.+++.+++.+.           .+++.|+++..+|.|+.+++.+.|+   +++.+++   ++++.+|
T Consensus       125 ~a~~v~~~Tg~al~laL~alr~~~-----------~~gd~VI~p~~th~S~~kAi~~~G~---~pv~Vd~~~d~~~~~iD  190 (444)
T TIGR03531       125 SAFVVPLATGMSLSLCLSALRHKR-----------PKAKYVIWPRIDQKSCIKAISTAGF---EPRVIETVLDGDELTTD  190 (444)
T ss_pred             EEEEECCHHHHHHHHHHHHcCCcC-----------CCCCEEEEECcChHHHHHHHHHcCC---eEEEeeeeecCcCCCcC
Confidence            489999999 89988887766420           1345688888999999999999999   6777774   3567999


Q ss_pred             HHHHHHHHHHhhhcCCCcEEEEEecc-CCccccccCHHHHHHHHHHcCCEEEEecccccccccccchhhhhcCC--CCcc
Q psy14299         80 CSFLEQTIQTSLAEKKIPLFVNATAG-TTVLGAFDPLDEIATVCEKYDLWMHVDACWGGSLIFSEKYSFVLKGI--NRAN  156 (448)
Q Consensus        80 ~e~Le~~l~~~~~~~~~~~lVv~~~~-~t~tG~~~~l~~I~~ia~~~g~~l~VD~A~~~~~~~~~~~~~~~~~~--~~aD  156 (448)
                      +++|+++|.+.   +.+.++++++.+ ++..|..+|+++|+++|++||+|+|+|+||+.+........  -.+.  +.+|
T Consensus       191 ~e~Le~aIt~~---~~kai~~Vv~Tp~t~~~g~~ddL~eIa~la~k~gI~lIvDaAyg~~~~~~~~~~--~~g~~~Grad  265 (444)
T TIGR03531       191 VEDIERAIEEI---GPDNILCVLSTTSCFAPRSPDDIEEIAKICANYDIPHIVNNAYGLQSNKYMELI--NKAIKVGRVD  265 (444)
T ss_pred             HHHHHHHHHhc---cCCCEEEEEEcCCcCCCcchhCHHHHHHHHHHcCCEEEEECcCcCcChhhhhhh--hccccccCCC
Confidence            99999999752   112344444443 44456899999999999999999999999997543221110  0122  2479


Q ss_pred             EEEECCccccCCCCceEEEEEeccchhhhh
Q psy14299        157 SVSWNPHKMLGAPLQCSILLIKEKGLLHQA  186 (448)
Q Consensus       157 ~~~~s~hK~l~~P~g~G~l~vr~~~~~~~~  186 (448)
                      ++++++||++.+|.++|+++++++++....
T Consensus       266 ~vv~s~hK~l~~pg~Gg~I~~~d~el~~~i  295 (444)
T TIGR03531       266 AVVSSTDKNFMVPVGGAIIYSFDENFIQEI  295 (444)
T ss_pred             eEEEeCccCCCCCCCEEEEEECCHHHHHHH
Confidence            999999999999999888888887765443

In the archaea and eukaryotes, the conversion of the mischarged serine to selenocysteine (Sec) on its tRNA is accomplished in two steps. This enzyme, O-phosphoseryl-tRNA(Sec) selenium transferase, acts second, after a phosphophorylation step catalyzed by a homolog of the bacterial SelA protein.

>COG0156 BioF 7-keto-8-aminopelargonate synthetase and related enzymes [Coenzyme metabolism]

Probab=99.89  E-value=2.4e-21  Score=194.49  Aligned_cols=279  Identities=15%  Similarity=0.144  Sum_probs=206.3

Q ss_pred             cEEEeCcHHHHHHHHHHHHHHhcCCcccccCCCCCCCeEEEecCCCchHHHHHHHHhCCCCCcEEEEecCCCCCcCHHHH
Q psy14299          4 KPFLLPGGSISNMYSICLARYRLDPDTKRKGLSHLPPLCMFTSEDSHYSMLKAAHWLGIGMDNVIRVKTNERGQMICSFL   83 (448)
Q Consensus         4 ~g~~t~ggT~an~~al~~a~~~~~~~~~~~G~~~~~~~~Vl~~~~~H~s~~~~~~~~g~~~~~v~~v~~~~~g~id~e~L   83 (448)
                      .+++-++|-.||+-.+.+...              +++.|+.++..|.|+.+++++.+.   +++..+++     |+++|
T Consensus       101 ~al~f~SGy~AN~~~i~~l~~--------------~~dli~~D~lnHASiidG~rls~a---~~~~f~Hn-----D~~~L  158 (388)
T COG0156         101 AALLFSSGFVANLGLLSALLK--------------KGDLIFSDELNHASIIDGIRLSRA---EVRRFKHN-----DLDHL  158 (388)
T ss_pred             cEEEEcccchhHHHHHHHhcC--------------CCcEEEEechhhhhHHHHHHhCCC---cEEEecCC-----CHHHH
Confidence            356778889998888777655              578899999999999999998888   78888887     99999


Q ss_pred             HHHHHHhhhcCCCcEEEEEeccCCccccccCHHHHHHHHHHcCCEEEEecccccccccccchhhhh--cCCC--CccEEE
Q psy14299         84 EQTIQTSLAEKKIPLFVNATAGTTVLGAFDPLDEIATVCEKYDLWMHVDACWGGSLIFSEKYSFVL--KGIN--RANSVS  159 (448)
Q Consensus        84 e~~l~~~~~~~~~~~lVv~~~~~t~tG~~~~l~~I~~ia~~~g~~l~VD~A~~~~~~~~~~~~~~~--~~~~--~aD~~~  159 (448)
                      |+.|++....+.++++|++....++.|.+.||++|++++++||++++||.||+.|.+--.. +..+  .++.  .+|+++
T Consensus       159 e~~l~~~~~~~~~~~~IvtegVfSMdGdiApL~~l~~L~~ky~a~L~VDEAHa~Gv~G~~G-rG~~e~~g~~~~~vdi~~  237 (388)
T COG0156         159 EALLEEARENGARRKLIVTEGVFSMDGDIAPLPELVELAEKYGALLYVDEAHAVGVLGPNG-RGLAEHFGLEPEEVDIIV  237 (388)
T ss_pred             HHHHHhhhccCCCceEEEEeccccCCCCcCCHHHHHHHHHHhCcEEEEEccccccccCCCC-ccHHHHhCCCCccceEEE
Confidence            9999885433325789999999999999999999999999999999999999999873211 1111  1232  368999


Q ss_pred             ECCccccCCCCceEEEEEeccchhhhhccCCcccccccCcccccccCCCCCcccCCCCchhHHHHHHHHHhChHHHHHHH
Q psy14299        160 WNPHKMLGAPLQCSILLIKEKGLLHQANATAATYLFQQDKFYDVSFDTGDKSVQCGRKVDAFKLWLMWKARGNLGFRHFV  239 (448)
Q Consensus       160 ~s~hK~l~~P~g~G~l~vr~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~g~~~~i  239 (448)
                      .++.|.|+   +.|.++..+............+|+++.+.+                +..+.                  
T Consensus       238 gTlsKAlG---s~Gg~v~g~~~~~d~L~~~ar~~ifStalp----------------P~~aa------------------  280 (388)
T COG0156         238 GTLGKALG---SSGGYIAGSAALIDYLRNRARPFIFSTALP----------------PAVAA------------------  280 (388)
T ss_pred             EEchhhhc---ccCceeeCcHHHHHHHHHhCCceeccCCCC----------------HHHHH------------------
Confidence            99999998   467777777777777767778888765521                00000                  


Q ss_pred             HHhhhhccCCCccchhhhhhhhhhhhhhhhhhhhhhhccccccccccCCCCCccccccchhhHHHHHHHHHhcCccHHHH
Q psy14299        240 DNAVDCSRGSMTFSTLLCFDLQGLLHQANATAATYLFQQDKFYDVSFDTGDKSVQCGRKVDAFKLWLMWKARGNLGFRHF  319 (448)
Q Consensus       240 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~  319 (448)
                                                                                     +...+++.+.  -..+.
T Consensus       281 ---------------------------------------------------------------a~~~al~~l~--~~~~~  295 (388)
T COG0156         281 ---------------------------------------------------------------AALAALRILE--EGPER  295 (388)
T ss_pred             ---------------------------------------------------------------HHHHHHHHHH--hCHHH
Confidence                                                                           0111111111  12456


Q ss_pred             HHHHHHHHHHHHHHhhcCCCeEEeccCCceeeEEEEeeccCCCccccchhhhhhhhhhhHHHHHHHHhCCcEEEE----e
Q psy14299        320 VDNAVDCSRYFLSQISQRPGFRLVIPEFQCTNICFWFIPVSLRDKVEDETWWSTLSKVAPRIKEKLVLGGTLMIG----Y  395 (448)
Q Consensus       320 ~~~~~~l~~~~~~~L~~~pg~~l~~~~~~~~~v~f~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~L~~~g~~~~~----~  395 (448)
                      .++..++.+++++.++.. ++.+  .+..++++.+.+.++                ..+.++.+.|+++| +++.    |
T Consensus       296 r~~L~~~~~~~~~~~~~~-~~~~--~~s~s~I~pv~~gd~----------------~~a~~~s~~l~~~G-i~v~~i~~P  355 (388)
T COG0156         296 RERLQELAAFFRSLLKAL-GLVL--LPSESPIIPVILGDE----------------ERALEASRALLEEG-IYVSAIRPP  355 (388)
T ss_pred             HHHHHHHHHHHHHHHHhc-CCcc--CCCCCCeeeeEeCCH----------------HHHHHHHHHHHHCC-eeEeeecCC
Confidence            677888899999777765 7765  356678887754321                12457888899888 5443    5


Q ss_pred             eecCCcccccEEEEEecCCCCCCHHHHHHHHHHHHHH
Q psy14299        396 QPLQHRNLHNFFRLVTTCHPASSRQDMDYAIDQIELR  432 (448)
Q Consensus       396 ~~~~g~~~~~~lRis~~~~~~~t~edid~l~~al~~~  432 (448)
                      +++.|.   ..+|+++  +..+|++||+++++++.++
T Consensus       356 TVp~gt---arlRi~l--ta~ht~~~I~~l~~~l~~~  387 (388)
T COG0156         356 TVPKGT---ARLRITL--TAAHTEEDIDRLAEALSEV  387 (388)
T ss_pred             CCCCCc---ceEEEEe--cCCCCHHHHHHHHHHHHhh
Confidence            566666   8999999  7899999999999999875

>PRK12566 glycine dehydrogenase; Provisional

Probab=99.89  E-value=4.1e-21  Score=208.35  Aligned_cols=317  Identities=13%  Similarity=0.065  Sum_probs=206.7

Q ss_pred             CccEEEeCcHHHHHHHHHHHHHHhcCCcccccCCCCCCCeEEEecCCCchHHHHHHHHhCCCCCcEEEEecCCCCCcCHH
Q psy14299          2 NLKPFLLPGGSISNMYSICLARYRLDPDTKRKGLSHLPPLCMFTSEDSHYSMLKAAHWLGIGMDNVIRVKTNERGQMICS   81 (448)
Q Consensus         2 ~~~g~~t~ggT~an~~al~~a~~~~~~~~~~~G~~~~~~~~Vl~~~~~H~s~~~~~~~~g~~~~~v~~v~~~~~g~id~e   81 (448)
                      +..-+.-.+|+++++.++++.|.+.    ..+|-+  .+.+|+++..+|.++...+...|+   +++.+|.+++|.+|++
T Consensus       559 d~~Sl~p~sGA~gE~A~Lmair~yh----~~~Ge~--~r~~vLIp~saHgtNpasa~~~Gi---eVv~Vp~D~~G~iDle  629 (954)
T PRK12566        559 DAICMQPNSGAQGEYAGLLAIRRYH----RSRGQS--QRDICLIPSSAHGTNPASAQMAGM---RVVIVECDPDGNVDLD  629 (954)
T ss_pred             CeEeecCCchHHHHHHHHHHHHHHH----HhcCCC--CCCEEEecccccccCHHHHHHCCC---EEEEeccCCCCCcCHH
Confidence            3343344578888888887766532    112311  356799999999888877888888   8999999999999999


Q ss_pred             HHHHHHHHhhhcCCCcEEEEEeccCCccccccCHHHHHHHHHHcCCEEEEecccccccccccchhhhhcCCCCccEEEEC
Q psy14299         82 FLEQTIQTSLAEKKIPLFVNATAGTTVLGAFDPLDEIATVCEKYDLWMHVDACWGGSLIFSEKYSFVLKGINRANSVSWN  161 (448)
Q Consensus        82 ~Le~~l~~~~~~~~~~~lVv~~~~~t~tG~~~~l~~I~~ia~~~g~~l~VD~A~~~~~~~~~~~~~~~~~~~~aD~~~~s  161 (448)
                      +|++.+++.   ..++.+|+++++++..+..+|+++|+++||++|++++||||+..+....+.-    ..+ ++|+++++
T Consensus       630 ~L~a~I~~~---~~~laaVmiT~Pnt~Gv~e~~V~eI~~iah~~Galv~vDgA~~~a~~~l~~P----g~~-GADi~~~s  701 (954)
T PRK12566        630 DLKAKAAAA---GDRLSCLMITYPSTHGVYEEGIREICEVVHQHGGQVYMDGANLNAQVGLARP----ADI-GADVSHMN  701 (954)
T ss_pred             HHHHHhhcc---CCCEEEEEEEecCcCceecchHHHHHHHHHHcCCEEEEEeeChhhccCCCCh----hhc-CCCEEEec
Confidence            999999742   1357789999999977777889999999999999999999998665544321    112 58999999


Q ss_pred             CccccCCCCceEEEEEeccchhhhhccCCcccccccC-cccccccCCCCCcccCCCCchhHHHHHHHHHhChHHHHHHHH
Q psy14299        162 PHKMLGAPLQCSILLIKEKGLLHQANATAATYLFQQD-KFYDVSFDTGDKSVQCGRKVDAFKLWLMWKARGNLGFRHFVD  240 (448)
Q Consensus       162 ~hK~l~~P~g~G~l~vr~~~~~~~~~~~~~~y~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~g~~~~i~  240 (448)
                      +|||+++|.|.|..+++.-......    .+|+.+.. ....+.  ...   +.+.                        
T Consensus       702 ~HKtf~~P~G~GGP~vG~iav~~~L----~pfLp~~P~~d~~G~--~~r---~ga~------------------------  748 (954)
T PRK12566        702 LHKTFCIPHGGGGPGMGPIGVRAHL----APFVANHPVVPVEGP--DPN---NGAV------------------------  748 (954)
T ss_pred             CCcccCcCccCCCCccchhhhhhhh----hhhccCCCCcCCCCC--CCC---CCce------------------------
Confidence            9999999999999888662211111    11221100 000000  000   0000                        


Q ss_pred             HhhhhccCCCccchhhhhhhhhhhhhhhhhhhhhhhccccccccccCCCCCcccccc-chhhHHHHHHHHHhcCccHHHH
Q psy14299        241 NAVDCSRGSMTFSTLLCFDLQGLLHQANATAATYLFQQDKFYDVSFDTGDKSVQCGR-KVDAFKLWLMWKARGNLGFRHF  319 (448)
Q Consensus       241 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~G~~~~  319 (448)
                                                                         ...|.. -......+..++.+|.+ +.+.
T Consensus       749 ---------------------------------------------------S~~~~gsa~~l~~A~~Yi~~lG~e-Lk~a  776 (954)
T PRK12566        749 ---------------------------------------------------SAAPWGSASILPISWMYIAMMGPQ-LADA  776 (954)
T ss_pred             ---------------------------------------------------eecccchHHHHHHHHHHHHHHCHH-HHHH
Confidence                                                               000111 11133444555666666 6666


Q ss_pred             HHHHHHHHHHHHHHhhcCCCeEEeccC---CceeeEEEEeeccCCCccccchhhhhhhhhhhHHHHHHHHhCCcEEEEee
Q psy14299        320 VDNAVDCSRYFLSQISQRPGFRLVIPE---FQCTNICFWFIPVSLRDKVEDETWWSTLSKVAPRIKEKLVLGGTLMIGYQ  396 (448)
Q Consensus       320 ~~~~~~l~~~~~~~L~~~pg~~l~~~~---~~~~~v~f~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~L~~~g~~~~~~~  396 (448)
                      ......+++|+.++|.+.  +++...+   +.+..+.+...+  ++..         .+.-..++.++|.+.| ++....
T Consensus       777 a~~ailnAnYla~rL~~~--~~v~~~~~~~~~~hEfii~~~~--l~~~---------~g~~~~dvakRL~d~G-ihapt~  842 (954)
T PRK12566        777 SEVAILSANYLANQLGGA--FPVLYRGRNERVAHECILDLRP--LKAQ---------TGISEEDVAKRLMDYG-FHAPTM  842 (954)
T ss_pred             HHHHHHHHHHHHHHhHhh--CCCCcCCCCCCeeeEEEEEccc--cccc---------cCCCHHHHHHHHHHCC-cEEeEE
Confidence            777789999999999874  4443122   223444444331  1100         0001246889999888 443333


Q ss_pred             ecCCcccccEEEEEecCCCCCCHHHHHHHHHHHHHHHHHhHHh
Q psy14299        397 PLQHRNLHNFFRLVTTCHPASSRQDMDYAIDQIELRGAEVDLE  439 (448)
Q Consensus       397 ~~~g~~~~~~lRis~~~~~~~t~edid~l~~al~~~~~~~~~~  439 (448)
                      .+...   +++|+++  +.+++++|+|+|+++|+++.++....
T Consensus       843 ~fPv~---~~LmIep--TE~eskeEIDrf~eAL~~I~~e~~~v  880 (954)
T PRK12566        843 SFPVP---GTLMVEP--TESESKAELDRFVEAMLSIRAEIGKV  880 (954)
T ss_pred             eeccC---CEEEEEe--eeeCCHHHHHHHHHHHHHHHHHHHHH
Confidence            33333   7899999  79999999999999999999886543

>PRK07179 hypothetical protein; Provisional

Probab=99.89  E-value=3.8e-21  Score=197.65  Aligned_cols=280  Identities=13%  Similarity=0.124  Sum_probs=187.0

Q ss_pred             cEEEeCcHHHHHHHHHHHHHHhcCCcccccCCCCCCCeEEEecCCCchHHHHHHHHhCCCCCcEEEEecCCCCCcCHHHH
Q psy14299          4 KPFLLPGGSISNMYSICLARYRLDPDTKRKGLSHLPPLCMFTSEDSHYSMLKAAHWLGIGMDNVIRVKTNERGQMICSFL   83 (448)
Q Consensus         4 ~g~~t~ggT~an~~al~~a~~~~~~~~~~~G~~~~~~~~Vl~~~~~H~s~~~~~~~~g~~~~~v~~v~~~~~g~id~e~L   83 (448)
                      ..++|+||++||..++.+...              +++.|+++..+|.++...++..|.   ++..++.     .|+++|
T Consensus       116 ~~~~~~sG~~An~~~l~~l~~--------------~g~~v~~~~~~h~s~~~~~~~~g~---~~~~~~~-----~d~~~l  173 (407)
T PRK07179        116 SCLLCQSGWAANVGLLQTIAD--------------PNTPVYIDFFAHMSLWEGVRAAGA---QAHPFRH-----NDVDHL  173 (407)
T ss_pred             cEEEECCHHHHHHHHHHHhCC--------------CCCEEEEECCcCHHHHHHHHHCCC---eEEEecC-----CCHHHH
Confidence            468999999999888876543              456788899999999999888877   5555543     499999


Q ss_pred             HHHHHHhhhcCCCcEEEEEeccCCccccccCHHHHHHHHHHcCCEEEEecccccccccccchh-hhhcCC-CCccEEEEC
Q psy14299         84 EQTIQTSLAEKKIPLFVNATAGTTVLGAFDPLDEIATVCEKYDLWMHVDACWGGSLIFSEKYS-FVLKGI-NRANSVSWN  161 (448)
Q Consensus        84 e~~l~~~~~~~~~~~lVv~~~~~t~tG~~~~l~~I~~ia~~~g~~l~VD~A~~~~~~~~~~~~-~~~~~~-~~aD~~~~s  161 (448)
                      ++++++.     .+++|++.++++++|.+.|+++|.++|++||+++|+|++|+.+........ ....++ ..+|+++.|
T Consensus       174 ~~~l~~~-----~~~lV~v~~v~n~tG~i~pl~~I~~l~~~~~~~livDea~~~g~~g~~g~g~~~~~~~~~~vdi~~~S  248 (407)
T PRK07179        174 RRQIERH-----GPGIIVVDSVYSTTGTIAPLADIVDIAEEFGCVLVVDESHSLGTHGPQGAGLVAELGLTSRVHFITAS  248 (407)
T ss_pred             HHHHHhc-----CCeEEEECCCCCCCCccccHHHHHHHHHHcCCEEEEECcccccCcCCCCCchHHhcCCCCCCCEEEee
Confidence            9999651     367888999999999999999999999999999999999987654211100 001122 246999999


Q ss_pred             CccccCCCCceEEEEEeccchhhhhccCCcccccccCcccccccCCCCCcccCCCCchhHHHHHHHHHhChHHHHHHHHH
Q psy14299        162 PHKMLGAPLQCSILLIKEKGLLHQANATAATYLFQQDKFYDVSFDTGDKSVQCGRKVDAFKLWLMWKARGNLGFRHFVDN  241 (448)
Q Consensus       162 ~hK~l~~P~g~G~l~vr~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~g~~~~i~~  241 (448)
                      +||+++++  .|++++++ ++.........++.+...                 ..  ..                    
T Consensus       249 ~sK~~g~~--~G~l~~~~-~~~~~~~~~~~~~~~~~t-----------------~~--~~--------------------  286 (407)
T PRK07179        249 LAKAFAGR--AGIITCPR-ELAEYVPFVSYPAIFSST-----------------LL--PH--------------------  286 (407)
T ss_pred             chHhhhcc--CeEEEeCH-HHHHHHHHhCcCeeeCCC-----------------CC--HH--------------------
Confidence            99999854  77777754 332322111111111000                 00  00                    


Q ss_pred             hhhhccCCCccchhhhhhhhhhhhhhhhhhhhhhhccccccccccCCCCCccccccchhhHHHHHHHHHhcCccHHHHHH
Q psy14299        242 AVDCSRGSMTFSTLLCFDLQGLLHQANATAATYLFQQDKFYDVSFDTGDKSVQCGRKVDAFKLWLMWKARGNLGFRHFVD  321 (448)
Q Consensus       242 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~  321 (448)
                                                                                .+.++..+++.+..  .+++.+
T Consensus       287 ----------------------------------------------------------~~aa~~aal~~~~~--~~~~~~  306 (407)
T PRK07179        287 ----------------------------------------------------------EIAGLEATLEVIES--ADDRRA  306 (407)
T ss_pred             ----------------------------------------------------------HHHHHHHHHHHHhc--CHHHHH
Confidence                                                                      00111122232222  245677


Q ss_pred             HHHHHHHHHHHHhhcCCCeEEeccCCceeeEEEEeeccCCCccccchhhhhhhhhhhHHHHHHHHhCCcEE---EEeeec
Q psy14299        322 NAVDCSRYFLSQISQRPGFRLVIPEFQCTNICFWFIPVSLRDKVEDETWWSTLSKVAPRIKEKLVLGGTLM---IGYQPL  398 (448)
Q Consensus       322 ~~~~l~~~~~~~L~~~pg~~l~~~~~~~~~v~f~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~L~~~g~~~---~~~~~~  398 (448)
                      +..++++++++.|+++ |+++.   ...+++.+.+.. .               .....+.+.|.++|+..   +.+...
T Consensus       307 ~l~~~~~~l~~~L~~~-g~~v~---~~~~i~~l~~~~-~---------------~~~~~~~~~L~~~GI~~~~~~~p~~~  366 (407)
T PRK07179        307 RLHANARFLREGLSEL-GYNIR---SESQIIALETGS-E---------------RNTEVLRDALEERNVFGAVFCAPATP  366 (407)
T ss_pred             HHHHHHHHHHHHHHHc-CCCCC---CCCCEEEEEeCC-H---------------HHHHHHHHHHHHCCceEeeecCCCCC
Confidence            8889999999999998 88765   334555554311 0               01236778898999531   112222


Q ss_pred             CCcccccEEEEEecCCCCCCHHHHHHHHHHHHHHHHHhH
Q psy14299        399 QHRNLHNFFRLVTTCHPASSRQDMDYAIDQIELRGAEVD  437 (448)
Q Consensus       399 ~g~~~~~~lRis~~~~~~~t~edid~l~~al~~~~~~~~  437 (448)
                      .+   .+++||++  +.++|++|+++++++|+++.++.+
T Consensus       367 ~~---~~~lRis~--~~~~t~edi~~~~~~l~~~~~~~~  400 (407)
T PRK07179        367 KN---RNLIRLSL--NADLTASDLDRVLEVCREARDEVD  400 (407)
T ss_pred             CC---CceEEEEE--CCCCCHHHHHHHHHHHHHHHHhhC
Confidence            22   37999999  689999999999999999887654

>COG2008 GLY1 Threonine aldolase [Amino acid transport and metabolism]

Probab=99.89  E-value=4e-22  Score=193.26  Aligned_cols=287  Identities=19%  Similarity=0.187  Sum_probs=182.9

Q ss_pred             ccEEEeCcHHHHHHHHHHHHHHhcCCcccccCCCCCCCeEEEecCCCchHHHHHHHHhCCCCCcEEEEecCCCCCcCHHH
Q psy14299          3 LKPFLLPGGSISNMYSICLARYRLDPDTKRKGLSHLPPLCMFTSEDSHYSMLKAAHWLGIGMDNVIRVKTNERGQMICSF   82 (448)
Q Consensus         3 ~~g~~t~ggT~an~~al~~a~~~~~~~~~~~G~~~~~~~~Vl~~~~~H~s~~~~~~~~g~~~~~v~~v~~~~~g~id~e~   82 (448)
                      ..++|+++||++|.+++.+.++              |+..|++.+.+|....+.....-.+......+...++|.+++++
T Consensus        51 ~a~~Fv~sGT~aN~lal~~~~~--------------~~~~vi~~~~aHi~~~E~Ga~~~~~~~~~~~~~~g~~Gklt~e~  116 (342)
T COG2008          51 EAALFVPSGTQANQLALAAHCQ--------------PGESVICHETAHIYTDECGAPEFFGGGQKLPIVPGADGKLTPED  116 (342)
T ss_pred             ceEEEecCccHHHHHHHHHhcC--------------CCCeEEEeccccceecccCcHHHHcCCceeccCCCCCCCcCHHH
Confidence            4689999999999999998885              56789999999999887654332221133344444789999999


Q ss_pred             HHHHHHHhhhcCC-CcEEEEEeccCCccccccC---HHHHHHHHHHcCCEEEEecccccccccccchhhhhcCCCCccEE
Q psy14299         83 LEQTIQTSLAEKK-IPLFVNATAGTTVLGAFDP---LDEIATVCEKYDLWMHVDACWGGSLIFSEKYSFVLKGINRANSV  158 (448)
Q Consensus        83 Le~~l~~~~~~~~-~~~lVv~~~~~t~tG~~~~---l~~I~~ia~~~g~~l~VD~A~~~~~~~~~~~~~~~~~~~~aD~~  158 (448)
                      |+..+..+.-.+. .|.+++.+..+ ..|.+.|   |++|+++||+||+.||+|||.-++.+.... .....-...+|++
T Consensus       117 v~~~i~~~d~~~~~~~~~~~e~~~t-e~GtVy~l~el~~i~~~~k~~~l~LHmDGAR~~nA~valg-~~~~~~~~~~D~v  194 (342)
T COG2008         117 VEAAIRPDDIHHAPTPLAVLENTAT-EGGTVYPLDELEAISAVCKEHGLPLHMDGARLANALVALG-VALKTIKSYVDSV  194 (342)
T ss_pred             HHHhhcCCCcccCCCceEEEeeccC-CCceecCHHHHHHHHHHHHHhCCceeechHHHHHHHHHcC-CCHHHHHhhCCEE
Confidence            9999986321233 44445555544 7898866   566788999999999999997776653321 1111112368999


Q ss_pred             EECCccccCCCCceEEEEEeccchhhhhccCCcccccccCcccccccCCCCCcccCCCCchhHHHHHHHHHhChHHHHHH
Q psy14299        159 SWNPHKMLGAPLQCSILLIKEKGLLHQANATAATYLFQQDKFYDVSFDTGDKSVQCGRKVDAFKLWLMWKARGNLGFRHF  238 (448)
Q Consensus       159 ~~s~hK~l~~P~g~G~l~vr~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~g~~~~  238 (448)
                      ++++.|.++.|.|.-+  +.+.++.+...     |...   ..+          ++.++.+-+      .+.        
T Consensus       195 ~~~~tK~g~~~~gAiv--~gn~~~~~~a~-----~~rK---~~G----------gl~~k~r~l------aA~--------  240 (342)
T COG2008         195 SFCLTKGGGAPVGAIV--FGNRDFAKRAR-----RWRK---RAG----------GLMRKARFL------AAQ--------  240 (342)
T ss_pred             EEecccCCcceeeeEE--EcCHHHHHHHH-----HHHH---Hhc----------ccHhhhhHH------HHH--------
Confidence            9999999999865444  33444433321     0000   000          000010000      000        


Q ss_pred             HHHhhhhccCCCccchhhhhhhhhhhhhhhhhhhhhhhccccccccccCCCCCccccccchhhHHHHHHHHHhcCccHHH
Q psy14299        239 VDNAVDCSRGSMTFSTLLCFDLQGLLHQANATAATYLFQQDKFYDVSFDTGDKSVQCGRKVDAFKLWLMWKARGNLGFRH  318 (448)
Q Consensus       239 i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~  318 (448)
                                                                                          .+-++...-...
T Consensus       241 --------------------------------------------------------------------~~~~l~~~~~~~  252 (342)
T COG2008         241 --------------------------------------------------------------------GLYALEDDVWRL  252 (342)
T ss_pred             --------------------------------------------------------------------HHHHHhccHHHH
Confidence                                                                                000111111233


Q ss_pred             HHHHHHHHHHHHHHHhhcCCCeEEeccCCceeeEEEEeeccCCCccccchhhhhhhhhhhHHHHHHHHhCCcEEEEeeec
Q psy14299        319 FVDNAVDCSRYFLSQISQRPGFRLVIPEFQCTNICFWFIPVSLRDKVEDETWWSTLSKVAPRIKEKLVLGGTLMIGYQPL  398 (448)
Q Consensus       319 ~~~~~~~l~~~~~~~L~~~pg~~l~~~~~~~~~v~f~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~L~~~g~~~~~~~~~  398 (448)
                      ...|..++++++.+.+.+.||+++. .+++.+++.+++..                     ...+.|...|+.+...-..
T Consensus       253 ~~~Han~mA~~La~~~~~~~G~~~~-~~~~tN~vf~~l~~---------------------~~i~~l~~~~~~~~~~~~~  310 (342)
T COG2008         253 AADHANAMAARLAEGLEAKPGVKLA-FPVETNMVFVRLPE---------------------SAIEALRLAGALFYRGVLI  310 (342)
T ss_pred             HHHHHHHHHHHHHHhhhhcCCceec-cCCcccEEEEECCh---------------------HHHHHHHhhchhheeeeec
Confidence            4566777799999999998999998 66777777775421                     2236677777444332222


Q ss_pred             CCcccccEEEEEecCCCCCCHHHHHHHHHHHHHHH
Q psy14299        399 QHRNLHNFFRLVTTCHPASSRQDMDYAIDQIELRG  433 (448)
Q Consensus       399 ~g~~~~~~lRis~~~~~~~t~edid~l~~al~~~~  433 (448)
                      .+.  +..+||++  |+.+++||||+++..++++.
T Consensus       311 ~~~--~~~vRfvt--s~a~~~edv~~~~~~~~~~~  341 (342)
T COG2008         311 GAH--GEIVRFVT--SWATSEEDVDELVAAIKALL  341 (342)
T ss_pred             cCC--CceEEEEe--eccCCHHHHHHHHHHHHHhh
Confidence            221  03799999  99999999999999998764

>TIGR01364 serC_1 phosphoserine aminotransferase

Probab=99.89  E-value=5e-22  Score=199.74  Aligned_cols=283  Identities=13%  Similarity=0.032  Sum_probs=192.4

Q ss_pred             cEEEeCc-HHHHHHHHHHHHHHhcCCcccccCCCCCCCeEEEecCCCchHHHHHHHHhCCCCCcEEEEecC----CCCCc
Q psy14299          4 KPFLLPG-GSISNMYSICLARYRLDPDTKRKGLSHLPPLCMFTSEDSHYSMLKAAHWLGIGMDNVIRVKTN----ERGQM   78 (448)
Q Consensus         4 ~g~~t~g-gT~an~~al~~a~~~~~~~~~~~G~~~~~~~~Vl~~~~~H~s~~~~~~~~g~~~~~v~~v~~~----~~g~i   78 (448)
                      .++|++| ||+++-.++.....+        |   .+..++..+...|.. .+.|+..|+    +..++.+    +...+
T Consensus        57 ~v~~~~gsgT~a~ea~~~nl~~~--------~---~~~l~i~~G~fg~r~-~~~a~~~g~----~~~~~~~~~~~~~~~~  120 (349)
T TIGR01364        57 EVLFLQGGATGQFAAVPLNLLAE--------G---KVADYIVTGAWSKKA-AKEAKKYGV----VNVVASGKEGNYTKIP  120 (349)
T ss_pred             eEEEEcCCchHHHHHHHHhcCCC--------C---CeEEEEECCHHHHHH-HHHHHHhCC----cEEEeccccCCCCCCC
Confidence            4788877 888876666544322        1   234556667777766 566676676    3334432    33356


Q ss_pred             CHHHHHHHHHHhhhcCCCcEEEEEeccCCccccccCHHHHHHHHHHcCCEEEEecccccccccccchhhhhcCCCCccEE
Q psy14299         79 ICSFLEQTIQTSLAEKKIPLFVNATAGTTVLGAFDPLDEIATVCEKYDLWMHVDACWGGSLIFSEKYSFVLKGINRANSV  158 (448)
Q Consensus        79 d~e~Le~~l~~~~~~~~~~~lVv~~~~~t~tG~~~~l~~I~~ia~~~g~~l~VD~A~~~~~~~~~~~~~~~~~~~~aD~~  158 (448)
                      |+++++.  +      +++++|.++|++|+||+..|     ++++.++++++||++++++..+++...        .|++
T Consensus       121 ~~~~~~~--~------~~~~~v~~th~ETstGv~~~-----~l~~~~~~l~iVDavss~g~~~id~~~--------~d~~  179 (349)
T TIGR01364       121 DPSTWEI--S------EDAAYVHYCANETIHGVEFR-----ELPDVKNAPLVADMSSNILSRPIDVSK--------FGLI  179 (349)
T ss_pred             CHHhcCC--C------CCCCEEEEcCCCCcccEecc-----eecccCCCeEEEEccccccCccCCHHH--------ccEE
Confidence            6666552  1      25789999999999999987     777788999999999999999776432        4799


Q ss_pred             EECCccccCCCCceEEEEEeccchhhhhccCCcccccccCcccccccCCCCCcccCCCCchhHHHHHHHHHhChHHHHHH
Q psy14299        159 SWNPHKMLGAPLQCSILLIKEKGLLHQANATAATYLFQQDKFYDVSFDTGDKSVQCGRKVDAFKLWLMWKARGNLGFRHF  238 (448)
Q Consensus       159 ~~s~hK~l~~P~g~G~l~vr~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~g~~~~  238 (448)
                      ++++||+++ |+|.|+++++++.+ ....+..+.|..              +                         ...
T Consensus       180 ~~ssqK~lg-P~Glg~l~~s~~~~-~~~~~~~~~~~~--------------~-------------------------~~~  218 (349)
T TIGR01364       180 YAGAQKNIG-PAGLTVVIVRKDLL-GRASRITPSMLN--------------Y-------------------------KIH  218 (349)
T ss_pred             EEecccccC-CCceEEEEECHHHH-hhcccCCCCcch--------------H-------------------------HHH
Confidence            999999986 99999999988643 332221111110              0                         000


Q ss_pred             HHHhhhhccCCCccchhhhhhhhhhhhhhhhhhhhhhhccccccccccCCCCCccccccchhhHHHHHHHHHhcCc-cHH
Q psy14299        239 VDNAVDCSRGSMTFSTLLCFDLQGLLHQANATAATYLFQQDKFYDVSFDTGDKSVQCGRKVDAFKLWLMWKARGNL-GFR  317 (448)
Q Consensus       239 i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-G~~  317 (448)
                      .+                                                .+.....++...+.++..+++++.++ |++
T Consensus       219 ~~------------------------------------------------~~~~~~Tp~~~~i~al~~al~~l~~~gG~e  250 (349)
T TIGR01364       219 AE------------------------------------------------NDSMYNTPPTFAIYVSGLVFKWLKEQGGVK  250 (349)
T ss_pred             Hh------------------------------------------------cCCCCCCCcHHHHHHHHHHHHHHHHcCCHH
Confidence            00                                                00001123466678888899999999 799


Q ss_pred             HHHHHHHHHHHHHHHHhhcCCCeEEeccCC--ce-eeEEEEeeccCCCccccchhhhhhhhhhhHHHHHHHHhCCcEEEE
Q psy14299        318 HFVDNAVDCSRYFLSQISQRPGFRLVIPEF--QC-TNICFWFIPVSLRDKVEDETWWSTLSKVAPRIKEKLVLGGTLMIG  394 (448)
Q Consensus       318 ~~~~~~~~l~~~~~~~L~~~pg~~l~~~~~--~~-~~v~f~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~L~~~g~~~~~  394 (448)
                      ++.+++.++++++++.|+++||+.....++  ++ .+++|.+....                +..++.+.+.++|+ ++.
T Consensus       251 ~i~~r~~~l~~~l~~~l~~~~gl~~~~~~~~~rs~~v~sf~~~~~~----------------~~~~~~~~~~~~Gi-~~~  313 (349)
T TIGR01364       251 AIEKRNQAKAQLLYDTIDNSNGFYRNPVDPRNRSRMNVVFTLGNEE----------------LEKRFLKEAEERGL-VSL  313 (349)
T ss_pred             HHHHHHHHHHHHHHHHHHhCCCeeccCCCHHHcCCeEEEEecCChh----------------HhHHHHHHHHHCCC-ccc
Confidence            999999999999999999998876551111  33 45666542111                12367778889995 433


Q ss_pred             eeecCCcccccEEEEEecCCCCCCHHHHHHHHHHHHHHHHH
Q psy14299        395 YQPLQHRNLHNFFRLVTTCHPASSRQDMDYAIDQIELRGAE  435 (448)
Q Consensus       395 ~~~~~g~~~~~~lRis~~~~~~~t~edid~l~~al~~~~~~  435 (448)
                      +... -   .+.+|+|+  +.|||+||||+|+++|+++.++
T Consensus       314 ~~~~-~---~g~vRvS~--~~~nt~edid~l~~al~~~~~~  348 (349)
T TIGR01364       314 KGHR-S---VGGMRASI--YNAMPLEGVQALVDFMKEFQKK  348 (349)
T ss_pred             CCcc-c---cCeeEEEC--cCCCCHHHHHHHHHHHHHHHHh
Confidence            3221 1   26899999  6899999999999999998764

This model represents the common form of the phosphoserine aminotransferase SerC. The phosphoserine aminotransferase of the archaeon Methanosarcina barkeri and putative phosphoserine aminotransferase of Mycobacterium tuberculosis are represented by separate models. All are members of the class V aminotransferases (pfam00266).

>PLN02721 threonine aldolase

Probab=99.89  E-value=3e-21  Score=194.10  Aligned_cols=285  Identities=18%  Similarity=0.228  Sum_probs=181.1

Q ss_pred             EEEeCcHHHHHHHHHHHHHHhcCCcccccCCCCCCCeEEEecCCCchHHHH---HHHHhCCCCCcEEEEecCCCCCcCHH
Q psy14299          5 PFLLPGGSISNMYSICLARYRLDPDTKRKGLSHLPPLCMFTSEDSHYSMLK---AAHWLGIGMDNVIRVKTNERGQMICS   81 (448)
Q Consensus         5 g~~t~ggT~an~~al~~a~~~~~~~~~~~G~~~~~~~~Vl~~~~~H~s~~~---~~~~~g~~~~~v~~v~~~~~g~id~e   81 (448)
                      ++++++||++++.++.+....             +++.|++++.+|+++.+   .+...|.   +++.+|.++++.+|++
T Consensus        58 ~~~~~~Gs~a~~~~l~~~~~~-------------~gd~Vl~~~~~~~~~~~~~~~~~~~g~---~~~~v~~~~~~~~d~~  121 (353)
T PLN02721         58 ALFVPSGTMGNLISVLVHCDV-------------RGSEVILGDNSHIHLYENGGISTLGGV---HPRTVKNNEDGTMDLD  121 (353)
T ss_pred             eEEecCccHHHHHHHHHHccC-------------CCCeEEEcCccceehhcccchhhhcCc---eeEecCCCcCCCcCHH
Confidence            689999999988777665442             56779999999998877   4566676   7888888888999999


Q ss_pred             HHHHHHHHhhhcC-CCcEEEEEecc-CCccccccC---HHHHHHHHHHcCCEEEEecccccccccccchhhhhcCCCCcc
Q psy14299         82 FLEQTIQTSLAEK-KIPLFVNATAG-TTVLGAFDP---LDEIATVCEKYDLWMHVDACWGGSLIFSEKYSFVLKGINRAN  156 (448)
Q Consensus        82 ~Le~~l~~~~~~~-~~~~lVv~~~~-~t~tG~~~~---l~~I~~ia~~~g~~l~VD~A~~~~~~~~~~~~~~~~~~~~aD  156 (448)
                      ++++.+++....+ +++++|+++.. ++++|...|   +++|.++|++||+++|+|+|+..+.......... .....+|
T Consensus       122 ~l~~~i~~~~~~~~~~~~~v~l~~~~~np~G~~~~~~~l~~l~~l~~~~g~~livD~a~~~~~~~~~~~~~~-~~~~~~d  200 (353)
T PLN02721        122 AIEAAIRPKGDDHFPTTRLICLENTHANCGGRCLSVEYTDKVGELAKRHGLKLHIDGARIFNASVALGVPVH-RLVKAAD  200 (353)
T ss_pred             HHHHHHHhccCCCCCcceEEEEeccccccCCccccHHHHHHHHHHHHHcCCEEEEEchhhhcchhhhCCCHH-HHhhhCC
Confidence            9999997421111 35788888775 455787655   7899999999999999999986543211111110 0112579


Q ss_pred             EEEECCccccCCCCceEEEEEeccchhhhhccCCcccccccCcccccccCCCCCcccCCCCchhHHHHHHHHHhChHHHH
Q psy14299        157 SVSWNPHKMLGAPLQCSILLIKEKGLLHQANATAATYLFQQDKFYDVSFDTGDKSVQCGRKVDAFKLWLMWKARGNLGFR  236 (448)
Q Consensus       157 ~~~~s~hK~l~~P~g~G~l~vr~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~g~~  236 (448)
                      ++++++||++++|.|  .+++.++++........ .+..                  .+.+...     .....+..+++
T Consensus       201 ~~~~s~sK~l~~~~G--~~~~~~~~~~~~~~~~~-~~~~------------------~~~~~~~-----~~~~~~~~~l~  254 (353)
T PLN02721        201 SVSVCLSKGLGAPVG--SVIVGSKSFIRKAKRLR-KTLG------------------GGMRQVG-----VLAAAALVALQ  254 (353)
T ss_pred             EEEEecccccCCcee--eEEecCHHHHHhHHHHH-HhcC------------------CCeehhH-----HHHHHHHHHHH
Confidence            999999999998755  33334544433221100 0000                  0000000     00011111111


Q ss_pred             HHHHHhhhhccCCCccchhhhhhhhhhhhhhhhhhhhhhhccccccccccCCCCCccccccchhhHHHHHHHHHhcCccH
Q psy14299        237 HFVDNAVDCSRGSMTFSTLLCFDLQGLLHQANATAATYLFQQDKFYDVSFDTGDKSVQCGRKVDAFKLWLMWKARGNLGF  316 (448)
Q Consensus       237 ~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~  316 (448)
                      ..                                                                             +
T Consensus       255 ~~-----------------------------------------------------------------------------~  257 (353)
T PLN02721        255 EN-----------------------------------------------------------------------------V  257 (353)
T ss_pred             HH-----------------------------------------------------------------------------H
Confidence            11                                                                             1


Q ss_pred             HHHHHHHHHHHHHHHHHhhcCCCeEE-eccCCceeeEEEEeeccCCCccccchhhhhhhhhhhHHHHHHHHhCCcEEEEe
Q psy14299        317 RHFVDNAVDCSRYFLSQISQRPGFRL-VIPEFQCTNICFWFIPVSLRDKVEDETWWSTLSKVAPRIKEKLVLGGTLMIGY  395 (448)
Q Consensus       317 ~~~~~~~~~l~~~~~~~L~~~pg~~l-~~~~~~~~~v~f~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~L~~~g~~~~~~  395 (448)
                      + ..++..++++++.+.|++++++++ + .++..+++.+++.+ ...             .....+.+.|.++|+. +.+
T Consensus       258 ~-~~~~~~~~~~~l~~~L~~~~~~~~~~-~~~~~~~~~~~~~~-~~~-------------~~~~~~~~~L~~~gi~-v~~  320 (353)
T PLN02721        258 P-KLEDDHKKAKLLAEGLNQIKGLRVNV-AAVETNIVYFDITD-GSR-------------ITAEKLCKSLEEHGVL-LMP  320 (353)
T ss_pred             H-HHHHHHHHHHHHHHHHHhCCCcEEec-CCccceEEEEEccC-Ccc-------------ccHHHHHHHHHhCCcE-Eec
Confidence            1 123335668899999999988865 4 45556665555421 100             0123788999988844 443


Q ss_pred             eecCCcccccEEEEEecCCCCCCHHHHHHHHHHHHHHHH
Q psy14299        396 QPLQHRNLHNFFRLVTTCHPASSRQDMDYAIDQIELRGA  434 (448)
Q Consensus       396 ~~~~g~~~~~~lRis~~~~~~~t~edid~l~~al~~~~~  434 (448)
                      .   +.   +++|+++  +++++++|+++++++|+++..
T Consensus       321 ~---~~---~~lR~~~--~~~~~~~~i~~~~~~l~~~~~  351 (353)
T PLN02721        321 G---NS---SRIRVVT--HHQISDSDVQYTLSCFQQAAL  351 (353)
T ss_pred             C---CC---ceEEEEe--cCcCCHHHHHHHHHHHHHHhh
Confidence            2   22   6899999  789999999999999998764

>cd00611 PSAT_like Phosphoserine aminotransferase (PSAT) family

Probab=99.89  E-value=5e-22  Score=200.52  Aligned_cols=284  Identities=14%  Similarity=0.066  Sum_probs=188.3

Q ss_pred             cEEEeCc-HHHHHHHHHHHHHHhcCCcccccCCCCCCCeEEEecCCCchHHHHHHHHhCCCCCcEEEEecCCCCCc-CHH
Q psy14299          4 KPFLLPG-GSISNMYSICLARYRLDPDTKRKGLSHLPPLCMFTSEDSHYSMLKAAHWLGIGMDNVIRVKTNERGQM-ICS   81 (448)
Q Consensus         4 ~g~~t~g-gT~an~~al~~a~~~~~~~~~~~G~~~~~~~~Vl~~~~~H~s~~~~~~~~g~~~~~v~~v~~~~~g~i-d~e   81 (448)
                      .++||+| ||+++..++.....+           +.+.++|+++...|.+ .+.++..|+   ++..++.++++.. ++.
T Consensus        64 ~vvf~~gs~T~a~~~~~~~l~~~-----------~~~~~~i~~g~~~~~~-~~~a~~~g~---~~~~~~~~~~g~~~~~~  128 (355)
T cd00611          64 KVLFLQGGATGQFAAVPLNLLGD-----------KGTADYVVTGAWSAKA-AKEAKRYGG---VVVIVAAKEEGKYTKIP  128 (355)
T ss_pred             eEEEEcCCchHHHHHHHHhcCCC-----------CCeEEEEECCHHHHHH-HHHHHhcCC---CcEEEecccccCCCCCC
Confidence            5899988 999976665544221           1256678887777766 445566677   6888887655433 422


Q ss_pred             HHH-HHHHHhhhcCCCcEEEEEeccCCccccccCHHHHHHHHHHcCCEEEEecccccccccccchhhhhcCCCCccEEEE
Q psy14299         82 FLE-QTIQTSLAEKKIPLFVNATAGTTVLGAFDPLDEIATVCEKYDLWMHVDACWGGSLIFSEKYSFVLKGINRANSVSW  160 (448)
Q Consensus        82 ~Le-~~l~~~~~~~~~~~lVv~~~~~t~tG~~~~l~~I~~ia~~~g~~l~VD~A~~~~~~~~~~~~~~~~~~~~aD~~~~  160 (448)
                      +++ ..+.      +++++|.++|.+|.+|...+     ++++.||++++||++++++..+++...        .|+...
T Consensus       129 ~~~~~~~~------~~~~lV~~~h~~t~tG~~~~-----~i~~~~g~~~~VDa~qs~g~~~idv~~--------~~~~~s  189 (355)
T cd00611         129 DVETWDLA------PDAAYVHYCSNETIHGVEFD-----EVPDTGGVPLVADMSSNILSRPIDVSK--------FGVIYA  189 (355)
T ss_pred             CHhhcCCC------CCCCEEEEeCCcccccEEcc-----eecccCCCeEEEEccccccCCCCCHHH--------hCEEEe
Confidence            222 3332      35889999999999999732     455569999999999999999877532        245556


Q ss_pred             CCccccCCCCceEEEEEeccchhhhhccCCcccccccCcccccccCCCCCcccCCCCchhHHHHHHHHHhChHHHHHHHH
Q psy14299        161 NPHKMLGAPLQCSILLIKEKGLLHQANATAATYLFQQDKFYDVSFDTGDKSVQCGRKVDAFKLWLMWKARGNLGFRHFVD  240 (448)
Q Consensus       161 s~hK~l~~P~g~G~l~vr~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~g~~~~i~  240 (448)
                      ++||+++ |.|+|+++++++.+ ....+..+.+..              +                         ....+
T Consensus       190 s~~K~lG-P~G~g~l~~~~~~~-~~~~~~~~~~~~--------------~-------------------------~~~~~  228 (355)
T cd00611         190 GAQKNLG-PAGVTVVIVRKDLL-GKARKITPSMLN--------------Y-------------------------KTHAD  228 (355)
T ss_pred             ecccccC-CCceEEEEECHHHH-hhcccCCCCccc--------------H-------------------------HHHHh
Confidence            6999875 99999999988643 322111111110              0                         00000


Q ss_pred             HhhhhccCCCccchhhhhhhhhhhhhhhhhhhhhhhccccccccccCCCCCccccccchhhHHHHHHHHHhcCc-cHHHH
Q psy14299        241 NAVDCSRGSMTFSTLLCFDLQGLLHQANATAATYLFQQDKFYDVSFDTGDKSVQCGRKVDAFKLWLMWKARGNL-GFRHF  319 (448)
Q Consensus       241 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-G~~~~  319 (448)
                                                                      ......-++...++++..+++++.++ |++.+
T Consensus       229 ------------------------------------------------~~~~~~Tpn~~~i~~L~aal~~l~~~gg~e~i  260 (355)
T cd00611         229 ------------------------------------------------NNSLYNTPPTFAIYMMGLVLKWLKEQGGVEAM  260 (355)
T ss_pred             ------------------------------------------------cCCCCCCChHHHHHHHHHHHHHHHHcCCHHHH
Confidence                                                            00001223355678888899999999 89999


Q ss_pred             HHHHHHHHHHHHHHhhcCCCeEEeccC--Cce-eeEEEEeeccCCCccccchhhhhhhhhhhHHHHHHHHhCCcEEEEee
Q psy14299        320 VDNAVDCSRYFLSQISQRPGFRLVIPE--FQC-TNICFWFIPVSLRDKVEDETWWSTLSKVAPRIKEKLVLGGTLMIGYQ  396 (448)
Q Consensus       320 ~~~~~~l~~~~~~~L~~~pg~~l~~~~--~~~-~~v~f~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~L~~~g~~~~~~~  396 (448)
                      .+|+.++++++++.|+++||+.....+  .+. .+++|++..  .              .+..++.+.+.+.|. + .+.
T Consensus       261 ~~~~~~l~~~l~~~l~~~~gl~~~~~~~~~rs~~vvsf~~~~--~--------------~l~~~~~~~~~r~G~-~-~~~  322 (355)
T cd00611         261 EKRNRQKAQLLYDTIDNSNGFYRGPVDKRARSRMNVPFRLGK--E--------------ELEKEFLKEAEAAGM-I-GLK  322 (355)
T ss_pred             HHHHHHHHHHHHHHHHhCccccccCCCHHHcCceEEEEEcCC--h--------------hhhHHHHHHHHHCCC-c-ccC
Confidence            999999999999999999996311011  234 347776421  1              112356678888995 3 333


Q ss_pred             ecCCcccccEEEEEecCCCCCCHHHHHHHHHHHHHHH
Q psy14299        397 PLQHRNLHNFFRLVTTCHPASSRQDMDYAIDQIELRG  433 (448)
Q Consensus       397 ~~~g~~~~~~lRis~~~~~~~t~edid~l~~al~~~~  433 (448)
                      .+..   .+.+|+|+  ++|||+||||+|+++|+++.
T Consensus       323 ~~~~---~g~vR~S~--~~~nt~edi~~l~~al~~~~  354 (355)
T cd00611         323 GHRS---VGGIRASI--YNALSLEGVQALADFMKEFQ  354 (355)
T ss_pred             CCcc---cCeEEEEc--cCCCCHHHHHHHHHHHHHHh
Confidence            2221   26899999  68999999999999999864

This family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). The major group in this CD corresponds to phosphoserine aminotransferase (PSAT). PSAT is active as a dimer and catalyzes the conversion of phosphohydroxypyruvate to phosphoserine.

>PRK05355 3-phosphoserine/phosphohydroxythreonine aminotransferase; Provisional

Probab=99.88  E-value=7.5e-22  Score=199.33  Aligned_cols=283  Identities=14%  Similarity=0.079  Sum_probs=193.5

Q ss_pred             cEEEeCcHHHHHHHHHHH-HHHhcCCcccccCCCCCCCeEEEecCCCchHHHHHHHHhCCCCCcEEEEecCC-CCCcCHH
Q psy14299          4 KPFLLPGGSISNMYSICL-ARYRLDPDTKRKGLSHLPPLCMFTSEDSHYSMLKAAHWLGIGMDNVIRVKTNE-RGQMICS   81 (448)
Q Consensus         4 ~g~~t~ggT~an~~al~~-a~~~~~~~~~~~G~~~~~~~~Vl~~~~~H~s~~~~~~~~g~~~~~v~~v~~~~-~g~id~e   81 (448)
                      ..+|++|++++.+-++.. ...+        |   .+..+|..+...|.+ .+.++..|.   . ..++.++ .+..+..
T Consensus        68 ~v~~~~gsgt~~~Ea~~~nl~~~--------g---~~~l~i~~G~fg~r~-~~~a~~~g~---~-~~~~~~~~~g~~~~~  131 (360)
T PRK05355         68 KVLFLQGGASLQFAMVPMNLLGG--------G---KKADYVDTGSWSKKA-IKEAKKYGE---V-NVAASSEDDGFTYIP  131 (360)
T ss_pred             EEEEEcCCchHHHHHHHHhcCCC--------C---CeEEEEECCHHHHHH-HHHHHHhCC---c-eEEecccccCCCCCC
Confidence            478888877776665433 2221        1   244567777777766 566676776   3 4555443 5666666


Q ss_pred             HHHH-HHHHhhhcCCCcEEEEEeccCCcccccc-CHHHHHHHHHHcCCEEEEecccccccccccchhhhhcCCCCccEEE
Q psy14299         82 FLEQ-TIQTSLAEKKIPLFVNATAGTTVLGAFD-PLDEIATVCEKYDLWMHVDACWGGSLIFSEKYSFVLKGINRANSVS  159 (448)
Q Consensus        82 ~Le~-~l~~~~~~~~~~~lVv~~~~~t~tG~~~-~l~~I~~ia~~~g~~l~VD~A~~~~~~~~~~~~~~~~~~~~aD~~~  159 (448)
                      ++++ .+++      ++++|.++|.+|+||.+. ||++|      +|++++||++++++..+++...        .|+++
T Consensus       132 ~~~~~~l~~------~~~~V~~th~eTstGv~~~~i~~i------~g~l~vVDavss~g~~~idv~~--------~d~~~  191 (360)
T PRK05355        132 PLDEWQLSD------DAAYVHYTSNETIDGTEFHELPDT------GDVPLVADMSSDILSRPIDVSK--------FGLIY  191 (360)
T ss_pred             ChhhccCCC------CCCEEEEccCCCcceEecCccccc------CCCcEEEEcCccccCccCCHHH--------ccEEE
Confidence            6655 5643      478999999999999998 78777      8999999999999998776432        37999


Q ss_pred             ECCccccCCCCceEEEEEeccchhhhhccCCcccccccCcccccccCCCCCcccCCCCchhHHHHHHHHHhChHHHHHHH
Q psy14299        160 WNPHKMLGAPLQCSILLIKEKGLLHQANATAATYLFQQDKFYDVSFDTGDKSVQCGRKVDAFKLWLMWKARGNLGFRHFV  239 (448)
Q Consensus       160 ~s~hK~l~~P~g~G~l~vr~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~g~~~~i  239 (448)
                      +++||+++ |+|.|+++++++.+ ....+..+.|+...                                       ...
T Consensus       192 ~ssqK~lg-P~Glg~l~~s~~~l-~~~~~~~~~~~~~~---------------------------------------~~~  230 (360)
T PRK05355        192 AGAQKNIG-PAGLTIVIVREDLL-GRALPSIPSMLDYK---------------------------------------THA  230 (360)
T ss_pred             Eecccccc-CCceEEEEECHHHH-hhcccCCChHHHHH---------------------------------------HHH
Confidence            99999986 99999999988643 33211111111100                                       000


Q ss_pred             HHhhhhccCCCccchhhhhhhhhhhhhhhhhhhhhhhccccccccccCCCCCccccccchhhHHHHHHHHHhcCc-cHHH
Q psy14299        240 DNAVDCSRGSMTFSTLLCFDLQGLLHQANATAATYLFQQDKFYDVSFDTGDKSVQCGRKVDAFKLWLMWKARGNL-GFRH  318 (448)
Q Consensus       240 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-G~~~  318 (448)
                      +                                                .......++...++++..+++++.++ |+++
T Consensus       231 ~------------------------------------------------~~~~~~Tp~~~~i~aL~~aL~~i~~~gG~e~  262 (360)
T PRK05355        231 D------------------------------------------------NDSMYNTPPTFAIYLAGLVFKWLKEQGGVAA  262 (360)
T ss_pred             h------------------------------------------------cCCccCCCcHHHHHHHHHHHHHHHHccCHHH
Confidence            0                                                00001234467788888999999999 8999


Q ss_pred             HHHHHHHHHHHHHHHhhcCCCeEEeccC--Cce-eeEEEEeeccCCCccccchhhhhhhhhhhHHHHHHHHhCCcEEEEe
Q psy14299        319 FVDNAVDCSRYFLSQISQRPGFRLVIPE--FQC-TNICFWFIPVSLRDKVEDETWWSTLSKVAPRIKEKLVLGGTLMIGY  395 (448)
Q Consensus       319 ~~~~~~~l~~~~~~~L~~~pg~~l~~~~--~~~-~~v~f~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~L~~~g~~~~~~  395 (448)
                      +.+++.++++++++.|++++.+..+ .+  .++ .+++|.+.. ..               ...++.+.+.++|++ + +
T Consensus       263 i~~r~~~l~~~l~~~l~~~~~~~~~-~~~~~rs~~v~sf~~~~-~~---------------~~~~~~~~~~~~Gi~-~-~  323 (360)
T PRK05355        263 MEKRNQEKAALLYDAIDSSDFYRNP-VAPEDRSRMNVPFTLAD-EE---------------LDKKFLAEAKAAGLV-G-L  323 (360)
T ss_pred             HHHHHHHHHHHHHHHHHhCCCcccC-CChhhcCCcEEEEEcCC-hH---------------HHHHHHHHHHHCCCc-c-c
Confidence            9999999999999999999643443 22  234 457775421 10               113677888889944 4 2


Q ss_pred             eecCCcccccEEEEEecCCCCCCHHHHHHHHHHHHHHHHH
Q psy14299        396 QPLQHRNLHNFFRLVTTCHPASSRQDMDYAIDQIELRGAE  435 (448)
Q Consensus       396 ~~~~g~~~~~~lRis~~~~~~~t~edid~l~~al~~~~~~  435 (448)
                      .....   .+.+|+|+  ++|||+||||+|+++|+++.+.
T Consensus       324 ~~~~~---~g~vRiS~--~~~nt~eei~~l~~~l~~~~~~  358 (360)
T PRK05355        324 KGHRS---VGGMRASI--YNAMPLEGVQALVDFMKEFERR  358 (360)
T ss_pred             CCCCc---cCcEEEEC--CCCCCHHHHHHHHHHHHHHHHh
Confidence            22221   26899999  6899999999999999998754

>PRK05937 8-amino-7-oxononanoate synthase; Provisional

Probab=99.88  E-value=2.5e-20  Score=189.24  Aligned_cols=278  Identities=15%  Similarity=0.215  Sum_probs=177.2

Q ss_pred             EEEeCcHHHHHHHHHHHHHHhcCCcccccCCCCCCCeEEEecCCCchHHHHHHHHhCCCCCcEEEEecCCCCCcCHHHHH
Q psy14299          5 PFLLPGGSISNMYSICLARYRLDPDTKRKGLSHLPPLCMFTSEDSHYSMLKAAHWLGIGMDNVIRVKTNERGQMICSFLE   84 (448)
Q Consensus         5 g~~t~ggT~an~~al~~a~~~~~~~~~~~G~~~~~~~~Vl~~~~~H~s~~~~~~~~g~~~~~v~~v~~~~~g~id~e~Le   84 (448)
                      +++.++|+++|+ ++..+..             .+++.|+++..+|.|+..+++....   ....++     ..|+++|+
T Consensus        74 ~l~~~sG~~a~~-~~~~~~~-------------~~~d~ii~d~~~H~sv~~~~~~~~~---~~~~~~-----~~d~~~l~  131 (370)
T PRK05937         74 AFIVPSGYMANL-GLCAHLS-------------SVTDYVLWDEQVHISVVYSLSVISG---WHQSFR-----HNDLDHLE  131 (370)
T ss_pred             EEEECChHHHHH-HHHHHhC-------------CCCCEEEEEhhhhHHHHHHHHHcCC---ceEEec-----CCCHHHHH
Confidence            467777888886 3333222             1456788899999999999987642   233444     34999999


Q ss_pred             HHHHHhhhcCCCcEEEEEeccCCccccccCHHHHHHHHHHcCCEEEEecccccccccccchhhh-hcCCCCccEEEECCc
Q psy14299         85 QTIQTSLAEKKIPLFVNATAGTTVLGAFDPLDEIATVCEKYDLWMHVDACWGGSLIFSEKYSFV-LKGINRANSVSWNPH  163 (448)
Q Consensus        85 ~~l~~~~~~~~~~~lVv~~~~~t~tG~~~~l~~I~~ia~~~g~~l~VD~A~~~~~~~~~~~~~~-~~~~~~aD~~~~s~h  163 (448)
                      +.|++..+.++.+.+|+++++++++|.+.|+++|.++|+++|+++|||+||+.|.+..+..... ..+....+.+..+++
T Consensus       132 ~~l~~~~~~~~~~~~v~v~~v~s~~G~i~pl~eI~~l~~~~~~~livDea~~~G~~g~~g~g~~~~~~~~~~~~~~~tls  211 (370)
T PRK05937        132 SLLESCRQRSFGRIFIFVCSVYSFKGTLAPLEQIIALSKKYHAHLIVDEAHAMGIFGDDGKGFCHSLGYENFYAVLVTYS  211 (370)
T ss_pred             HHHHhhhccCCCcEEEEEecCCCCCCCccCHHHHHHHHHHcCCEEEEECCccccccCCCCCchHHhhCCCCCcEEEEech
Confidence            9997643222345677889999999999999999999999999999999999887654321100 011122345667788


Q ss_pred             cccCCCCceEEEEEeccchhhhhccCCcccccccCcccccccCCCCCcccCCCCchhHHHHHHHHHhChHHHHHHHHHhh
Q psy14299        164 KMLGAPLQCSILLIKEKGLLHQANATAATYLFQQDKFYDVSFDTGDKSVQCGRKVDAFKLWLMWKARGNLGFRHFVDNAV  243 (448)
Q Consensus       164 K~l~~P~g~G~l~vr~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~g~~~~i~~~~  243 (448)
                      |.++ |.|+|+++.++  ..........+|.+...                 -.                          
T Consensus       212 K~~g-~~G~~vl~~~~--~~~~~~~~~~~~~~s~~-----------------~~--------------------------  245 (370)
T PRK05937        212 KALG-SMGAALLSSSE--VKQDLMLNSPPLRYSTG-----------------LP--------------------------  245 (370)
T ss_pred             hhhh-cCceEEEcCHH--HHHHHHHhCCCCeecCC-----------------CC--------------------------
Confidence            9875 67888766533  21111111122221110                 00                          


Q ss_pred             hhccCCCccchhhhhhhhhhhhhhhhhhhhhhhccccccccccCCCCCccccccchhhHHHHHHHHHhcCccHHHHHHHH
Q psy14299        244 DCSRGSMTFSTLLCFDLQGLLHQANATAATYLFQQDKFYDVSFDTGDKSVQCGRKVDAFKLWLMWKARGNLGFRHFVDNA  323 (448)
Q Consensus       244 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~  323 (448)
                                                                            .+.+.++..+++.+..+| +.+.++.
T Consensus       246 ------------------------------------------------------~~~~~a~~aal~~l~~~~-~~~~~~l  270 (370)
T PRK05937        246 ------------------------------------------------------PHLLISIQVAYDFLSQEG-ELARKQL  270 (370)
T ss_pred             ------------------------------------------------------HHHHHHHHHHHHHHHhCc-HHHHHHH
Confidence                                                                  011222333444444555 4566788


Q ss_pred             HHHHHHHHHHhhcC-CCeEEeccCCceeeEEEEeeccCCCccccchhhhhhhhhhhHHHHHHHHhCCcEEEEeeecCCcc
Q psy14299        324 VDCSRYFLSQISQR-PGFRLVIPEFQCTNICFWFIPVSLRDKVEDETWWSTLSKVAPRIKEKLVLGGTLMIGYQPLQHRN  402 (448)
Q Consensus       324 ~~l~~~~~~~L~~~-pg~~l~~~~~~~~~v~f~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~L~~~g~~~~~~~~~~g~~  402 (448)
                      .++++++.+.|... ++.          ...+.+.  +..               ...+.+.|.++| +++........ 
T Consensus       271 ~~l~~~l~~~l~~~~~~~----------~~~i~~~--~~~---------------~~~~~~~L~~~g-i~v~~~~~~~~-  321 (370)
T PRK05937        271 FRLKEYFAQKFSSAAPGC----------VQPIFLP--GIS---------------EQELYSKLVETG-IRVGVVCFPTG-  321 (370)
T ss_pred             HHHHHHHHHhcCCCCCCC----------EEEEEeC--Chh---------------HHHHHHHHHHCC-eeEEeeCCCCC-
Confidence            88999999888653 111          1123221  111               236788888888 55553332222 


Q ss_pred             cccEEEEEecCCCCCCHHHHHHHHHHHHHHHHHhHH
Q psy14299        403 LHNFFRLVTTCHPASSRQDMDYAIDQIELRGAEVDL  438 (448)
Q Consensus       403 ~~~~lRis~~~~~~~t~edid~l~~al~~~~~~~~~  438 (448)
                        +++|+|+  |+++|+||||+++++|+++.+++++
T Consensus       322 --~~iRis~--~~~~t~edid~l~~~L~~~~~~~~~  353 (370)
T PRK05937        322 --PFLRVNL--HAFNTEDEVDILVSVLATYLEKYQK  353 (370)
T ss_pred             --CEEEEEc--CCCCCHHHHHHHHHHHHHHHHHhCC
Confidence              6899999  8999999999999999999887654

>cd00616 AHBA_syn 3-amino-5-hydroxybenzoic acid synthase family (AHBA_syn)

Probab=99.87  E-value=1.5e-20  Score=188.84  Aligned_cols=150  Identities=11%  Similarity=0.084  Sum_probs=114.7

Q ss_pred             cEEEeCcHHHHHHHHHHHHHHhcCCcccccCCCCCCCeEEEecCCCchHHHHHHHHhCCCCCcEEEEecCC-CCCcCHHH
Q psy14299          4 KPFLLPGGSISNMYSICLARYRLDPDTKRKGLSHLPPLCMFTSEDSHYSMLKAAHWLGIGMDNVIRVKTNE-RGQMICSF   82 (448)
Q Consensus         4 ~g~~t~ggT~an~~al~~a~~~~~~~~~~~G~~~~~~~~Vl~~~~~H~s~~~~~~~~g~~~~~v~~v~~~~-~g~id~e~   82 (448)
                      .+++|+|||+++..++.+.+..             +++.|+++..+|.++..++...|.   +++.++.++ ++.+|+++
T Consensus        35 ~~~~~~sgt~al~~~l~~l~~~-------------~gd~vl~~~~~~~~~~~~~~~~g~---~~~~~~~~~~~~~~d~~~   98 (352)
T cd00616          35 YAVAVSSGTAALHLALRALGIG-------------PGDEVIVPSFTFVATANAILLLGA---TPVFVDIDPDTYNIDPEL   98 (352)
T ss_pred             eEEEECCHHHHHHHHHHHcCCC-------------CCCEEEeCCcchHHHHHHHHHcCC---eEEEEecCCCcCCcCHHH
Confidence            4789999999988887765321             567899999999999999998888   788899887 78999999


Q ss_pred             HHHHHHHhhhcCCCcEEEEEeccCCccccccCHHHHHHHHHHcCCEEEEecccccccccccchhhhhcCCCCccEEEECC
Q psy14299         83 LEQTIQTSLAEKKIPLFVNATAGTTVLGAFDPLDEIATVCEKYDLWMHVDACWGGSLIFSEKYSFVLKGINRANSVSWNP  162 (448)
Q Consensus        83 Le~~l~~~~~~~~~~~lVv~~~~~t~tG~~~~l~~I~~ia~~~g~~l~VD~A~~~~~~~~~~~~~~~~~~~~aD~~~~s~  162 (448)
                      +++.+++      ++++|++++   ++|...|+++|.++|+++|+++++|++|+.+.......   +..  ..|+.++|+
T Consensus        99 l~~~i~~------~~~~v~~~~---~~G~~~~~~~i~~l~~~~~i~li~D~a~~~g~~~~~~~---~~~--~~d~~~~S~  164 (352)
T cd00616          99 IEAAITP------RTKAIIPVH---LYGNPADMDAIMAIAKRHGLPVIEDAAQALGATYKGRK---VGT--FGDAGAFSF  164 (352)
T ss_pred             HHHhcCc------CCeEEEEEC---CCCCcCCHHHHHHHHHHcCCeEEEECCCCCCCeECCEE---ccc--CcceeEEcC
Confidence            9998843      477888765   58999999999999999999999999999876543210   111  246667664


Q ss_pred             --ccccCCCCceEEEEEeccchhh
Q psy14299        163 --HKMLGAPLQCSILLIKEKGLLH  184 (448)
Q Consensus       163 --hK~l~~P~g~G~l~vr~~~~~~  184 (448)
                        |||+++|. .|+++.+++++..
T Consensus       165 ~~~K~~~~~~-gg~~~~~~~~~~~  187 (352)
T cd00616         165 HPTKNLTTGE-GGAVVTNDEELAE  187 (352)
T ss_pred             CCCCCCcccC-ceEEEECCHHHHH
Confidence              59995544 3556665544433

AHBA_syn family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). The members of this CD are involved in various biosynthetic pathways for secondary metabolites. Some well studied proteins in this CD are AHBA_synthase, protein product of pleiotropic regulatory gene degT, Arnb aminotransferase and pilin glycosylation protein. The prototype of this family, the AHBA_synthase, is a dimeric PLP dependent enzyme. AHBA_syn is the terminal enzyme of 3-amino-5-hydroxybenzoic acid (AHBA) formation which is involved in the biosynthesis of ansamycin antibiotics, including rifamycin B. Some members of this CD are involved in 4-amino-6-deoxy-monosaccharide D-perosamine synthesis. Perosamine is an important element in the glycosylation of several cell products, such as antibiotics and lipopolysaccharides of gram-positive and gram-negative bacteria. The pilin glycosylation protein

>PLN03226 serine hydroxymethyltransferase; Provisional

Probab=99.87  E-value=2.2e-20  Score=194.51  Aligned_cols=299  Identities=12%  Similarity=0.110  Sum_probs=195.5

Q ss_pred             eCcHHHHHHHHHHHHHHhcCCcccccCCCCCCCeEEEecC------CCchHHHHHHHHhCCCCC-cEEEEecC-CCCCcC
Q psy14299          8 LPGGSISNMYSICLARYRLDPDTKRKGLSHLPPLCMFTSE------DSHYSMLKAAHWLGIGMD-NVIRVKTN-ERGQMI   79 (448)
Q Consensus         8 t~ggT~an~~al~~a~~~~~~~~~~~G~~~~~~~~Vl~~~------~~H~s~~~~~~~~g~~~~-~v~~v~~~-~~g~id   79 (448)
                      .++|+.||+.++.+..+              |++.|+..+      ..|.+...++++.+.+.. ++...+++ ++|.+|
T Consensus       106 ~~SG~~AN~av~~aL~~--------------pgD~Il~~d~~~gGhl~H~~~~~g~~~s~~~~~~~~~~y~~~~~~g~iD  171 (475)
T PLN03226        106 PLSGSPANFAVYTALLQ--------------PHDRIMGLDLPHGGHLSHGYQTDGKKISATSIYFESMPYRLDESTGLID  171 (475)
T ss_pred             cCchHHHHHHHHHHhCC--------------CCCEEEECCCCcCcchhhhhhhcccccccceEEEEeeeeeecCCCCCcC
Confidence            38999999988877654              567788744      667776666554444210 11133444 468999


Q ss_pred             HHHHHHHHHHhhhcCCCcEEEEEeccCCccccccCHHHHHHHHHHcCCEEEEecccccccccccchhhhhcCCCCccEEE
Q psy14299         80 CSFLEQTIQTSLAEKKIPLFVNATAGTTVLGAFDPLDEIATVCEKYDLWMHVDACWGGSLIFSEKYSFVLKGINRANSVS  159 (448)
Q Consensus        80 ~e~Le~~l~~~~~~~~~~~lVv~~~~~t~tG~~~~l~~I~~ia~~~g~~l~VD~A~~~~~~~~~~~~~~~~~~~~aD~~~  159 (448)
                      +++|++++.+     .+|++|++.  .+.+|...|+++|.++|+++|++++||+||+.|....+.....   +..+|+++
T Consensus       172 ~d~Le~~l~~-----~~pklIv~~--~S~~s~~~D~a~i~~ia~~~ga~LlvD~AH~~Gli~~~~~~~p---~~~~Div~  241 (475)
T PLN03226        172 YDKLEKKAML-----FRPKLIIAG--ASAYPRDWDYARMRKIADKVGALLMCDMAHISGLVAAQEAASP---FEYCDVVT  241 (475)
T ss_pred             HHHHHHHHhh-----cCCeEEEEe--cCcCCCccCHHHHHHHHHHcCCEEEEEchhhhCcccCCCCCCC---CCCCeEEE
Confidence            9999999975     246666553  3458899999999999999999999999999999865543211   23589999


Q ss_pred             ECCccccCCCCceEEEEEeccchhhhhccCCcccccccCcccccccCCCCCcccCCCCchhHHHHHHHHHhChHHHHHHH
Q psy14299        160 WNPHKMLGAPLQCSILLIKEKGLLHQANATAATYLFQQDKFYDVSFDTGDKSVQCGRKVDAFKLWLMWKARGNLGFRHFV  239 (448)
Q Consensus       160 ~s~hK~l~~P~g~G~l~vr~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~g~~~~i  239 (448)
                      +++||||++|.| |+++++++ ...........|..                                       +...+
T Consensus       242 ~t~hK~L~GP~G-g~I~~~~~-~~~~~~~g~~~~~d---------------------------------------~~~~i  280 (475)
T PLN03226        242 TTTHKSLRGPRG-GMIFFRKG-PKPPKGQGEGAVYD---------------------------------------YEDKI  280 (475)
T ss_pred             ecCcccccCCCc-eEEEEchh-hcccccCCCccHHH---------------------------------------HHHHh
Confidence            999999999998 77777554 22111000000000                                       00000


Q ss_pred             HHhhhhccCCCccchhhhhhhhhhhhhhhhhhhhhhhccccccccccCCCCCccccc-cchhhHHHHHHHHHhcCccHHH
Q psy14299        240 DNAVDCSRGSMTFSTLLCFDLQGLLHQANATAATYLFQQDKFYDVSFDTGDKSVQCG-RKVDAFKLWLMWKARGNLGFRH  318 (448)
Q Consensus       240 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~G~~~  318 (448)
                      +.                                     ..+.         .++.+ ....+.++.+++++...+|+++
T Consensus       281 ~~-------------------------------------a~~~---------~~~g~p~~~~iaal~aAl~~i~~~~~~~  314 (475)
T PLN03226        281 NF-------------------------------------AVFP---------GLQGGPHNHTIAALAVALKQAMTPEFKA  314 (475)
T ss_pred             cc-------------------------------------ccCC---------ccCCCchHHHHHHHHHHHHHHhCcCHHH
Confidence            00                                     0000         00111 1334566778899999999999


Q ss_pred             HHHHHHHHHHHHHHHhhcCCCeEEeccCCceeeEEEEeeccCCCccccchhhhhhhhhhhHHHHHHHHhCCcEEEEeeec
Q psy14299        319 FVDNAVDCSRYFLSQISQRPGFRLVIPEFQCTNICFWFIPVSLRDKVEDETWWSTLSKVAPRIKEKLVLGGTLMIGYQPL  398 (448)
Q Consensus       319 ~~~~~~~l~~~~~~~L~~~pg~~l~~~~~~~~~v~f~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~L~~~g~~~~~~~~~  398 (448)
                      +.++..++++++++.|++. |++++......+++.+.+.|.++.+               .++.+.|.+.|++ +.....
T Consensus       315 ~~~~~~~na~~L~~~L~~~-G~~l~~~~t~~hi~lv~~~~~gi~~---------------~~~~~~L~~~~I~-~nk~~~  377 (475)
T PLN03226        315 YQKQVKANAAALANRLMSK-GYKLVTGGTDNHLVLWDLRPLGLTG---------------SRVEKVLDLAHIT-LNKNAV  377 (475)
T ss_pred             HHHHHHHHHHHHHHHHHhC-CCEEEcCCCCCCEEEEEccCCCCCH---------------HHHHHHHHHCCCE-ECCCCC
Confidence            9999999999999999995 9999832233566666665555442               2566777777743 432211


Q ss_pred             CCc---ccccEEEEEe---cCCCCCCHHHHHHHHHHHHHHHHH
Q psy14299        399 QHR---NLHNFFRLVT---TCHPASSRQDMDYAIDQIELRGAE  435 (448)
Q Consensus       399 ~g~---~~~~~lRis~---~~~~~~t~edid~l~~al~~~~~~  435 (448)
                      .+.   -.+..+|++.   + +...+++|++++.+.|.++.+.
T Consensus       378 p~~~~~~~~~giRiGt~~lt-~~g~~~~d~~~ia~~i~~~~~~  419 (475)
T PLN03226        378 PGDSSALVPGGVRIGTPAMT-SRGLVEKDFEKVAEFLHRAVTI  419 (475)
T ss_pred             CCCcccCCCCCcccCcHHHH-HCCCCHHHHHHHHHHHHHHHHH
Confidence            110   0124688832   2 5678899999999999998873

>TIGR01366 serC_3 phosphoserine aminotransferase, putative

Probab=99.87  E-value=7.2e-21  Score=192.39  Aligned_cols=288  Identities=15%  Similarity=0.043  Sum_probs=185.1

Q ss_pred             cEEEeCc-HHHHHHHHHHHHHHhcCCcccccCCCCCCCeEEEecCCCchH-HHHHHHHhCCCCCcEEEEecCCCCCcCHH
Q psy14299          4 KPFLLPG-GSISNMYSICLARYRLDPDTKRKGLSHLPPLCMFTSEDSHYS-MLKAAHWLGIGMDNVIRVKTNERGQMICS   81 (448)
Q Consensus         4 ~g~~t~g-gT~an~~al~~a~~~~~~~~~~~G~~~~~~~~Vl~~~~~H~s-~~~~~~~~g~~~~~v~~v~~~~~g~id~e   81 (448)
                      .++|++| ||.++..++......             +..++  ..-+|.+ +.+.+....... ++..++.+++..++.+
T Consensus        61 ~v~f~~gs~T~a~~~~~~~l~~~-------------~~l~i--~~G~~~~~~~~~a~~~~~~~-~~~~~~~~~~~~~~~~  124 (361)
T TIGR01366        61 EVILGNGGATAFWDAATFGLIEK-------------KSLHL--SFGEFSSKFAKAVKLAPWLG-EPIIVTADPGSAPEPQ  124 (361)
T ss_pred             eEEEECCchhHHHHHHHHhcccc-------------cccEE--ecCHHHHHHHHHHHhhhccC-CceEEecCCCCCCCCc
Confidence            5778655 999977776544221             22223  3344443 333444322111 3666776655544432


Q ss_pred             HHHHHHHHhhhcCCCcEEEEEeccCCccccccCHHHHHHHHHHcCCEEEEecccccccccccchhhhhcCCCCccEEEEC
Q psy14299         82 FLEQTIQTSLAEKKIPLFVNATAGTTVLGAFDPLDEIATVCEKYDLWMHVDACWGGSLIFSEKYSFVLKGINRANSVSWN  161 (448)
Q Consensus        82 ~Le~~l~~~~~~~~~~~lVv~~~~~t~tG~~~~l~~I~~ia~~~g~~l~VD~A~~~~~~~~~~~~~~~~~~~~aD~~~~s  161 (448)
                           +      .+++++|+++|++|.+|.+.|+++|   +|++|++++||++++++..+++..        .+|+++++
T Consensus       125 -----~------~~~~~lV~~~h~et~tG~~~pi~~I---~~~~g~~~iVDavqs~g~~~idv~--------~~D~~~~s  182 (361)
T TIGR01366       125 -----A------DPGVDVIAWAHNETSTGVAVPVRRP---EGSDDALVVIDATSGAGGLPVDIA--------ETDVYYFA  182 (361)
T ss_pred             -----c------CCCCCEEEEcccCCccceecccccc---cccCCCeEEEEcCccccCCCCCHH--------HCCEEEEE
Confidence                 1      2368999999999999999999998   589999999999999999877642        26999999


Q ss_pred             CccccCCCCceEEEEEeccchhhhhccCC------cccccccCcccccccCCCCCcccCCCCchhHHHHHHHHHhChHHH
Q psy14299        162 PHKMLGAPLQCSILLIKEKGLLHQANATA------ATYLFQQDKFYDVSFDTGDKSVQCGRKVDAFKLWLMWKARGNLGF  235 (448)
Q Consensus       162 ~hK~l~~P~g~G~l~vr~~~~~~~~~~~~------~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~g~  235 (448)
                      +||++++|+|.++++++++. +....+..      +.|+..                                       
T Consensus       183 ~~K~lg~~~Gl~~~~~s~~~-~~~~~~~~~~~~~~p~~~d~---------------------------------------  222 (361)
T TIGR01366       183 PQKNFASDGGLWLAIMSPAA-LERIEAIAASGRWVPEFLSL---------------------------------------  222 (361)
T ss_pred             chhhcCCCCceEEEEECHHH-HhhhhcccCCCCCCchhhhH---------------------------------------
Confidence            99999999998888887764 33322100      001100                                       


Q ss_pred             HHHHHHhhhhccCCCccchhhhhhhhhhhhhhhhhhhhhhhccccccccccCCCCCccccccchhhHHHHHHHHHhcCc-
Q psy14299        236 RHFVDNAVDCSRGSMTFSTLLCFDLQGLLHQANATAATYLFQQDKFYDVSFDTGDKSVQCGRKVDAFKLWLMWKARGNL-  314 (448)
Q Consensus       236 ~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-  314 (448)
                      ....+..                                             .......-..+...+++..+++++.++ 
T Consensus       223 ~~~~~~~---------------------------------------------~~~~t~~tp~i~~i~~l~~al~~l~~~g  257 (361)
T TIGR01366       223 PTAVDNS---------------------------------------------LKNQTYNTPAIATLALLAEQIDWMNGNG  257 (361)
T ss_pred             HHHHhcc---------------------------------------------ccCCCCCCchHHHHHHHHHHHHHHHHcc
Confidence            0000000                                             000000111244455778899999888 


Q ss_pred             cHHHHHHHHHHHHHHHHHHhhcCCCeEEeccCC--ceee-EEEEeeccCCCccccchhhhhhhhhhhHHHHHHHHhCCcE
Q psy14299        315 GFRHFVDNAVDCSRYFLSQISQRPGFRLVIPEF--QCTN-ICFWFIPVSLRDKVEDETWWSTLSKVAPRIKEKLVLGGTL  391 (448)
Q Consensus       315 G~~~~~~~~~~l~~~~~~~L~~~pg~~l~~~~~--~~~~-v~f~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~L~~~g~~  391 (448)
                      |++.+.++..++++++++.++++++++++...+  .+.. .++.+ +.+++               ..++.+.|.++|+.
T Consensus       258 g~e~~~~r~~~l~~~l~~~l~~~~~~~~~~~~~~~~s~~v~~v~~-~~g~~---------------~~~v~~~L~~~gI~  321 (361)
T TIGR01366       258 GLDWAVARTADSSSRLYSWAQERPYATPFVTDPGKRSQVVGTIDF-VDDID---------------AATVAKILRANGIV  321 (361)
T ss_pred             CHHHHHHHHHHHHHHHHHHHHhCCCcccCCCChhhcccceEEEEC-CCccC---------------HHHHHHHHHHCCCe
Confidence            699999999999999999999997677662112  1222 23333 34433               23688888888855


Q ss_pred             EEEeeecCCcccccEEEEEecCCCCCCHHHHHHHHHHHHHHHHH
Q psy14299        392 MIGYQPLQHRNLHNFFRLVTTCHPASSRQDMDYAIDQIELRGAE  435 (448)
Q Consensus       392 ~~~~~~~~g~~~~~~lRis~~~~~~~t~edid~l~~al~~~~~~  435 (448)
                      +..+...-+   ...+|+|++  .++|++||++|+++|+++.++
T Consensus       322 i~~~~~~l~---~~~vRis~~--~~~t~~di~~l~~al~~~~~~  360 (361)
T TIGR01366       322 DTEPYRKLG---RNQLRVAMF--PAIDPDDVEALTECVDWVVER  360 (361)
T ss_pred             eccCccccC---CCcEEEEcC--CCCCHHHHHHHHHHHHHHHhh
Confidence            432211111   368999995  699999999999999998764

This model represents a putative variant form of the serine biosynthesis enzyme phosphoserine aminotransferase, as found in Mycobacterium tuberculosis and related high-GC Gram-positive bacteria.

>cd06454 KBL_like KBL_like; this family belongs to the pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I)

Probab=99.87  E-value=7.9e-20  Score=183.33  Aligned_cols=282  Identities=12%  Similarity=0.070  Sum_probs=183.6

Q ss_pred             EEEeCcHHHHHHHHHHHHHHhcCCcccccCCCCCCCeEEEecCCCchHHHHHHHHhCCCCCcEEEEecCCCCCcCHHHHH
Q psy14299          5 PFLLPGGSISNMYSICLARYRLDPDTKRKGLSHLPPLCMFTSEDSHYSMLKAAHWLGIGMDNVIRVKTNERGQMICSFLE   84 (448)
Q Consensus         5 g~~t~ggT~an~~al~~a~~~~~~~~~~~G~~~~~~~~Vl~~~~~H~s~~~~~~~~g~~~~~v~~v~~~~~g~id~e~Le   84 (448)
                      .+++++||++|..++.++..              +++.|++++..|.++..+++..|.   ++..++.     +|+++++
T Consensus        64 ~iv~~sg~~a~~~~~~~~~~--------------~gd~Vl~~~~~~~~~~~~~~~~g~---~~~~~~~-----~~~~~le  121 (349)
T cd06454          64 ALVFSSGYAANDGVLSTLAG--------------KGDLIISDSLNHASIIDGIRLSGA---KKRIFKH-----NDMEDLE  121 (349)
T ss_pred             EEEeccHHHHHHHHHHHhcC--------------CCCEEEEehhhhHHHHHHHHHcCC---ceEEecC-----CCHHHHH
Confidence            57788899998877765543              567789999999999999988887   6666653     5889999


Q ss_pred             HHHHHhhhcCCCcEEEEEeccCCccccccCHHHHHHHHHHcCCEEEEecccccccccccchh-hhhc-CCCCccEEEECC
Q psy14299         85 QTIQTSLAEKKIPLFVNATAGTTVLGAFDPLDEIATVCEKYDLWMHVDACWGGSLIFSEKYS-FVLK-GINRANSVSWNP  162 (448)
Q Consensus        85 ~~l~~~~~~~~~~~lVv~~~~~t~tG~~~~l~~I~~ia~~~g~~l~VD~A~~~~~~~~~~~~-~~~~-~~~~aD~~~~s~  162 (448)
                      +.+++.. ...++++|+++++++++|...|+++|+++|+++|+++++|++|+.+........ .... .....|+++.++
T Consensus       122 ~~i~~~~-~~~~~~~v~~~~~~~~tG~~~~~~~i~~~~~~~~~~livD~a~~~g~~~~~~~~~~~~~~~~~~~~i~~~s~  200 (349)
T cd06454         122 KLLREAR-RPYGKKLIVTEGVYSMDGDIAPLPELVDLAKKYGAILFVDEAHSVGVYGPHGRGVEEFGGLTDDVDIIMGTL  200 (349)
T ss_pred             HHHHHhh-ccCCCeEEEEeccccCCCCccCHHHHHHHHHHcCCEEEEEccccccccCCCCCChhhhccccccCcEEEeec
Confidence            9997632 123578888899999999999999999999999999999999987654211100 0011 112578999999


Q ss_pred             ccccCCCCceEEEEEeccchhhhhccCCcccccccCcccccccCCCCCcccCCCCchhHHHHHHHHHhChHHHHHHHHHh
Q psy14299        163 HKMLGAPLQCSILLIKEKGLLHQANATAATYLFQQDKFYDVSFDTGDKSVQCGRKVDAFKLWLMWKARGNLGFRHFVDNA  242 (448)
Q Consensus       163 hK~l~~P~g~G~l~vr~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~g~~~~i~~~  242 (448)
                      ||+++.+.  |+++. ++............+...                  + ...                       
T Consensus       201 sK~~~~~g--G~i~~-~~~~~~~~~~~~~~~~~~------------------~-~~~-----------------------  235 (349)
T cd06454         201 GKAFGAVG--GYIAG-SKELIDYLRSYARGFIFS------------------T-SLP-----------------------  235 (349)
T ss_pred             hhhhcccC--CEEEC-CHHHHHHHHHhchhhhcc------------------C-CCC-----------------------
Confidence            99998643  55544 344333322111111100                  0 000                       


Q ss_pred             hhhccCCCccchhhhhhhhhhhhhhhhhhhhhhhccccccccccCCCCCccccccchhhHHHHHHHHHhcCccHHHHHHH
Q psy14299        243 VDCSRGSMTFSTLLCFDLQGLLHQANATAATYLFQQDKFYDVSFDTGDKSVQCGRKVDAFKLWLMWKARGNLGFRHFVDN  322 (448)
Q Consensus       243 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~  322 (448)
                                                                             ...+.++..+++....  .+.+.++
T Consensus       236 -------------------------------------------------------~~~~~a~~~~l~~~~~--~~~~~~~  258 (349)
T cd06454         236 -------------------------------------------------------PAVAAAALAALEVLQG--GPERRER  258 (349)
T ss_pred             -------------------------------------------------------HHHHHHHHHHHHHHhc--CHHHHHH
Confidence                                                                   0011112223333322  3566788


Q ss_pred             HHHHHHHHHHHhhcCCCeEEeccCCceeeEEEEeeccCCCccccchhhhhhhhhhhHHHHHHHHhCCcEEEEeeecC-Cc
Q psy14299        323 AVDCSRYFLSQISQRPGFRLVIPEFQCTNICFWFIPVSLRDKVEDETWWSTLSKVAPRIKEKLVLGGTLMIGYQPLQ-HR  401 (448)
Q Consensus       323 ~~~l~~~~~~~L~~~pg~~l~~~~~~~~~v~f~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~L~~~g~~~~~~~~~~-g~  401 (448)
                      ..++++++.+.|+++ |++++ .++......+.. +.+.               ...++.+.|.++| +.+.+.... +.
T Consensus       259 ~~~~~~~l~~~l~~~-g~~~~-~~~~~~~~~~~~-~~~~---------------~~~~~~~~L~~~g-I~~~~~~~~~~~  319 (349)
T cd06454         259 LQENVRYLRRGLKEL-GFPVG-GSPSHIIPPLIG-DDPA---------------KAVAFSDALLERG-IYVQAIRYPTVP  319 (349)
T ss_pred             HHHHHHHHHHHHHhc-CCccc-CCCCCcEEEEeC-CChH---------------HHHHHHHHHHhCC-ceEEEecCCccC
Confidence            889999999999987 88876 433333333322 1111               1247888999888 444432211 11


Q ss_pred             ccccEEEEEecCCCCCCHHHHHHHHHHHHHH
Q psy14299        402 NLHNFFRLVTTCHPASSRQDMDYAIDQIELR  432 (448)
Q Consensus       402 ~~~~~lRis~~~~~~~t~edid~l~~al~~~  432 (448)
                      ..++++|+++  +.+++++|+++++++|+++
T Consensus       320 ~~~~~iRi~~--~~~~~~~~i~~~~~~l~~~  348 (349)
T cd06454         320 RGTARLRISL--SAAHTKEDIDRLLEALKEV  348 (349)
T ss_pred             CCCCeEEEEE--eCCCCHHHHHHHHHHHHHh
Confidence            1136999999  6899999999999999875

The major groups in this CD corresponds to serine palmitoyltransferase (SPT), 5-aminolevulinate synthase (ALAS), 8-amino-7-oxononanoate synthase (AONS), and 2-amino-3-ketobutyrate CoA ligase (KBL). SPT is responsible for the condensation of L-serine with palmitoyl-CoA to produce 3-ketodihydrospingosine, the reaction of the first step in sphingolipid biosynthesis. ALAS is involved in heme biosynthesis; it catalyzes the synthesis of 5-aminolevulinic acid from glycine and succinyl-coenzyme A. AONS catalyses the decarboxylative condensation of l-alanine and pimeloyl-CoA in the first committed step of biotin biosynthesis. KBL catalyzes the second reaction step of the metabolic degradation pathway for threonine converting 2-amino-3-ketobutyrate, to glycine and acetyl-CoA. The members of this CD are widely found in all three forms of life.

>TIGR01821 5aminolev_synth 5-aminolevulinic acid synthase

Probab=99.86  E-value=2.1e-19  Score=184.35  Aligned_cols=287  Identities=13%  Similarity=0.184  Sum_probs=187.6

Q ss_pred             cEEEeCcHHHHHHHHHHHHHHhcCCcccccCCCCCCCeEEEecCCCchHHHHHHHHhCCCCCcEEEEecCCCCCcCHHHH
Q psy14299          4 KPFLLPGGSISNMYSICLARYRLDPDTKRKGLSHLPPLCMFTSEDSHYSMLKAAHWLGIGMDNVIRVKTNERGQMICSFL   83 (448)
Q Consensus         4 ~g~~t~ggT~an~~al~~a~~~~~~~~~~~G~~~~~~~~Vl~~~~~H~s~~~~~~~~g~~~~~v~~v~~~~~g~id~e~L   83 (448)
                      ..+++++|+++|..++..++..            .+++.|+++...|.++..+++..|.   .+..++++     |++++
T Consensus       107 ~~l~~~sG~~an~~ai~~l~~~------------~~~~~v~~~~~~h~s~~~~~~~~g~---~~~~~~~~-----d~~~l  166 (402)
T TIGR01821       107 SALVFTSGYVANDATLATLAKI------------IPGCVIFSDELNHASMIEGIRHSGA---EKFIFRHN-----DVAHL  166 (402)
T ss_pred             eEEEECchHHHHHHHHHHhhCC------------CCCCEEEEcchHhHHHHHHHHHcCC---eEEEECCC-----CHHHH
Confidence            4688899999999998776642            1456788888899999999988777   55556543     88999


Q ss_pred             HHHHHHhhhcCCCcEEEEEeccCCccccccCHHHHHHHHHHcCCEEEEecccccccccccchhh--hhcCC-CCccEEEE
Q psy14299         84 EQTIQTSLAEKKIPLFVNATAGTTVLGAFDPLDEIATVCEKYDLWMHVDACWGGSLIFSEKYSF--VLKGI-NRANSVSW  160 (448)
Q Consensus        84 e~~l~~~~~~~~~~~lVv~~~~~t~tG~~~~l~~I~~ia~~~g~~l~VD~A~~~~~~~~~~~~~--~~~~~-~~aD~~~~  160 (448)
                      ++.++..  ...++++|+++++++++|.+.|+++|.++|++||++++||+||+.|.+. +....  ...++ ...|++..
T Consensus       167 ~~~l~~~--~~~~~~~v~~e~~~~~~G~~~~l~~i~~l~~~~~~~livDea~~~G~~g-~~g~g~~~~~~~~~~~div~~  243 (402)
T TIGR01821       167 EKLLQSV--DPNRPKIIAFESVYSMDGDIAPIEEICDLADKYGALTYLDEVHAVGLYG-PRGGGIAERDGLMHRIDIIEG  243 (402)
T ss_pred             HHHHHhc--cCCCCeEEEEcCCCCCCCCccCHHHHHHHHHHcCCEEEEeCcccccccC-CCCCccchhccCCCCCeEEEE
Confidence            9988642  1125789999999999999999999999999999999999999966531 11010  01111 23688888


Q ss_pred             CCccccCCCCceEEEEEeccchhhhhccCCcccccccCcccccccCCCCCcccCCCCchhHHHHHHHHHhChHHHHHHHH
Q psy14299        161 NPHKMLGAPLQCSILLIKEKGLLHQANATAATYLFQQDKFYDVSFDTGDKSVQCGRKVDAFKLWLMWKARGNLGFRHFVD  240 (448)
Q Consensus       161 s~hK~l~~P~g~G~l~vr~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~g~~~~i~  240 (448)
                      ++.|.++.+.  |++.. ++++.........+|.++..                   ..+                    
T Consensus       244 t~sKa~g~~G--G~i~~-~~~~~~~l~~~~~~~~~t~~-------------------~~~--------------------  281 (402)
T TIGR01821       244 TLAKAFGVVG--GYIAA-SRKLIDAIRSYAPGFIFTTS-------------------LPP--------------------  281 (402)
T ss_pred             echhhhccCC--ceeec-CHHHHHHHHHhCcCceecCc-------------------CCH--------------------
Confidence            9999998755  44444 43333332211122211100                   000                    


Q ss_pred             HhhhhccCCCccchhhhhhhhhhhhhhhhhhhhhhhccccccccccCCCCCccccccchhhHHHHHHHHHhcCccHHHHH
Q psy14299        241 NAVDCSRGSMTFSTLLCFDLQGLLHQANATAATYLFQQDKFYDVSFDTGDKSVQCGRKVDAFKLWLMWKARGNLGFRHFV  320 (448)
Q Consensus       241 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~  320 (448)
                                                                                +.+.++..+++.+..+  +.+.
T Consensus       282 ----------------------------------------------------------~~~aaa~aaL~~~~~~--~~~~  301 (402)
T TIGR01821       282 ----------------------------------------------------------AIAAGATASIRHLKES--QDLR  301 (402)
T ss_pred             ----------------------------------------------------------HHHHHHHHHHHHhhcC--HHHH
Confidence                                                                      0111222334433333  4455


Q ss_pred             HHHHHHHHHHHHHhhcCCCeEEeccCCceeeEEEEeeccCCCccccchhhhhhhhhhhHHHHHHHHhC-CcEEEEeeecC
Q psy14299        321 DNAVDCSRYFLSQISQRPGFRLVIPEFQCTNICFWFIPVSLRDKVEDETWWSTLSKVAPRIKEKLVLG-GTLMIGYQPLQ  399 (448)
Q Consensus       321 ~~~~~l~~~~~~~L~~~pg~~l~~~~~~~~~v~f~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~L~~~-g~~~~~~~~~~  399 (448)
                      ++..++++++.+.|+++ |++++  ++..+++.+.+ +..               ....++.+.|.++ | +++.+..+.
T Consensus       302 ~~~~~~~~~l~~~L~~~-g~~~~--~~~~~i~~i~~-~~~---------------~~a~~~~~~L~~~~G-i~v~~~~~p  361 (402)
T TIGR01821       302 RAHQENVKRLKNLLEAL-GIPVI--PNPSHIVPVII-GDA---------------ALCKKVSDLLLNKHG-IYVQPINYP  361 (402)
T ss_pred             HHHHHHHHHHHHHHHHc-CCCcC--CCCCCEEEEEe-CCH---------------HHHHHHHHHHHhcCC-EEEEeECCC
Confidence            56678899999999987 88765  34455555532 100               0124688888754 7 555543221


Q ss_pred             Cc-ccccEEEEEecCCCCCCHHHHHHHHHHHHHHHHHhH
Q psy14299        400 HR-NLHNFFRLVTTCHPASSRQDMDYAIDQIELRGAEVD  437 (448)
Q Consensus       400 g~-~~~~~lRis~~~~~~~t~edid~l~~al~~~~~~~~  437 (448)
                      .. ....++|+++  +.++|++|+++++++|+++.++++
T Consensus       362 ~~~~g~~~lRis~--~~~~t~edi~~~~~~l~~~~~~~~  398 (402)
T TIGR01821       362 TVPRGTERLRITP--TPAHTDKMIDDLVEALLLVWDRLG  398 (402)
T ss_pred             CCCCCCceEEEEe--CCCCCHHHHHHHHHHHHHHHHHcC
Confidence            11 1126899999  789999999999999999987653

This model represents 5-aminolevulinic acid synthase, an enzyme for one of two routes to the heme precursor 5-aminolevulinate. The protein is a pyridoxal phosphate-dependent enzyme related to 2-amino-3-ketobutyrate CoA tranferase and 8-amino-7-oxononanoate synthase. This enzyme appears restricted to the alpha Proteobacteria and mitochondrial derivatives.

>PRK13580 serine hydroxymethyltransferase; Provisional

Probab=99.86  E-value=5.3e-20  Score=189.10  Aligned_cols=244  Identities=12%  Similarity=0.104  Sum_probs=166.5

Q ss_pred             cEEEEecC-CCCCcCHHHHHHHHHHhhhcCCCcEEEEEeccCCccccccCHHHHHHHHHHcCCEEEEecccccccccccc
Q psy14299         66 NVIRVKTN-ERGQMICSFLEQTIQTSLAEKKIPLFVNATAGTTVLGAFDPLDEIATVCEKYDLWMHVDACWGGSLIFSEK  144 (448)
Q Consensus        66 ~v~~v~~~-~~g~id~e~Le~~l~~~~~~~~~~~lVv~~~~~t~tG~~~~l~~I~~ia~~~g~~l~VD~A~~~~~~~~~~  144 (448)
                      .++..+++ +++.+|++++++.+.+      .++.|++++.++. |...|+++|.++|+++|++++||+||+.|.+..+.
T Consensus       194 ~~~~y~vd~~~g~iD~d~l~~~~~~------~~plvii~g~S~~-~~~~dl~~i~eia~~~gA~L~VD~AH~~Gligg~~  266 (493)
T PRK13580        194 HQRSYGVDPDTGLLDYDEIAALARE------FKPLILVAGYSAY-PRRVNFAKLREIADEVGAVLMVDMAHFAGLVAGKV  266 (493)
T ss_pred             eeEecccCcccCccCHHHHHHHHhh------cCCEEEEeCcccc-CCCcCHHHHHHHHHHcCCEEEEECchhhceecccc
Confidence            34555665 4689999999999976      3557777788887 55779999999999999999999999999986443


Q ss_pred             hhhhhcCCCCccEEEECCccccCCCCceEEEEEeccchhhhhccCCcccccccCcccccccCCCCCcccCCCCchhHHHH
Q psy14299        145 YSFVLKGINRANSVSWNPHKMLGAPLQCSILLIKEKGLLHQANATAATYLFQQDKFYDVSFDTGDKSVQCGRKVDAFKLW  224 (448)
Q Consensus       145 ~~~~~~~~~~aD~~~~s~hK~l~~P~g~G~l~vr~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  224 (448)
                      ..........+|++++++||+|++|.| |+++++++ +..... ...+|+++..                  ..      
T Consensus       267 ~~~~~~~~~~~D~vtgT~hKaL~GP~G-G~I~~~~~-l~~~L~-~a~P~i~gg~------------------l~------  319 (493)
T PRK13580        267 FTGDEDPVPHADIVTTTTHKTLRGPRG-GLVLAKKE-YADAVD-KGCPLVLGGP------------------LP------  319 (493)
T ss_pred             chhhcCCCCCCcEEEeCChhhccCCCe-EEEEecHH-HHHHHh-hCCCcccCCC------------------cc------
Confidence            221112234689999999999998986 77777653 333332 2234443321                  00      


Q ss_pred             HHHHHhChHHHHHHHHHhhhhccCCCccchhhhhhhhhhhhhhhhhhhhhhhccccccccccCCCCCccccccchhhHHH
Q psy14299        225 LMWKARGNLGFRHFVDNAVDCSRGSMTFSTLLCFDLQGLLHQANATAATYLFQQDKFYDVSFDTGDKSVQCGRKVDAFKL  304 (448)
Q Consensus       225 ~~~~~~g~~g~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  304 (448)
                                                                                                +.+.+.
T Consensus       320 --------------------------------------------------------------------------p~iAA~  325 (493)
T PRK13580        320 --------------------------------------------------------------------------HVMAAK  325 (493)
T ss_pred             --------------------------------------------------------------------------HHHHHH
Confidence                                                                                      001122


Q ss_pred             HHHHHHhcCccHHHHHHHHHHHHHHHHHHhhcCCCeEEeccCCceeeEEEEeeccCCCccccchhhhhhhhhhhHHHHHH
Q psy14299        305 WLMWKARGNLGFRHFVDNAVDCSRYFLSQISQRPGFRLVIPEFQCTNICFWFIPVSLRDKVEDETWWSTLSKVAPRIKEK  384 (448)
Q Consensus       305 ~~~~~~~~~~G~~~~~~~~~~l~~~~~~~L~~~pg~~l~~~~~~~~~v~f~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~  384 (448)
                      .+++.......++++.++..+++++|++.|.+. ||+++......+++.+.+.+.+.               ....+.+.
T Consensus       326 avAl~e~~~~ef~~y~~~l~~Na~~La~~L~~~-G~~vv~ggTdshIV~V~lg~~~~---------------~g~~a~~~  389 (493)
T PRK13580        326 AVALAEARTPEFQKYAQQVVDNARALAEGFLKR-GARLVTGGTDNHLVLIDVTSFGL---------------TGRQAESA  389 (493)
T ss_pred             HHHHHHHhCccHHHHHHHHHHHHHHHHHHHHhc-CCCccCCCCCCCEEEEEeCCHHH---------------HHHHHHHH
Confidence            233444444556778889999999999999998 99986223456888776532211               11256678


Q ss_pred             HHhCCcEEEE----eeecCCcccccEEEEEecCCCCC----CHHHHHHHHHHHHHHHHHh
Q psy14299        385 LVLGGTLMIG----YQPLQHRNLHNFFRLVTTCHPAS----SRQDMDYAIDQIELRGAEV  436 (448)
Q Consensus       385 L~~~g~~~~~----~~~~~g~~~~~~lRis~~~~~~~----t~edid~l~~al~~~~~~~  436 (448)
                      |.+.| +++.    |....+......||+++  +..|    +++|++++++.|.++.+..
T Consensus       390 L~e~G-I~vn~i~~Ptvp~g~~~~srLRIg~--~A~ttrg~teedi~~iad~l~~~l~~~  446 (493)
T PRK13580        390 LLDAG-IVTNRNSIPSDPNGAWYTSGIRLGT--PALTTLGMGSDEMDEVAELIVKVLSNT  446 (493)
T ss_pred             HHHCC-eEEccccCCCCCCCCCCCceEEecc--chhhhcCCCHHHHHHHHHHHHHHHHhh
Confidence            88999 5554    33333311137899999  5644    6999999999999888754

>KOG1368|consensus

Probab=99.86  E-value=9e-21  Score=177.67  Aligned_cols=285  Identities=16%  Similarity=0.206  Sum_probs=192.2

Q ss_pred             cEEEeCcHHHHHHHHHHHHHHhcCCcccccCCCCCCCeEEEecCCCchHHHHHHHHhCCCCCcEEEEecCCCCCcCHHHH
Q psy14299          4 KPFLLPGGSISNMYSICLARYRLDPDTKRKGLSHLPPLCMFTSEDSHYSMLKAAHWLGIGMDNVIRVKTNERGQMICSFL   83 (448)
Q Consensus         4 ~g~~t~ggT~an~~al~~a~~~~~~~~~~~G~~~~~~~~Vl~~~~~H~s~~~~~~~~g~~~~~v~~v~~~~~g~id~e~L   83 (448)
                      .|+|+++|||+|+++++..+.+             ++..|++++.+|.-..+...+.-+....++++...+||.||++++
T Consensus        73 AgLFv~SGTmgNllaIm~Hc~~-------------rg~eii~gd~~HI~~~E~gg~s~l~gv~~~tv~~e~dgtm~ledI  139 (384)
T KOG1368|consen   73 AGLFVPSGTMGNLLAIMVHCHQ-------------RGSEIIVGDRAHIHRYEQGGISQLAGVHVRTVKNENDGTMDLEDI  139 (384)
T ss_pred             ceeeecccccccHHHHHHHhcC-------------CCceEEeccchheeehhccChhhhccceeEeeeeCCCCeeeHHHH
Confidence            5899999999999999999986             677899999999988876654444444899999999999999999


Q ss_pred             HHHHHHhh-h-cCCCcEEEEEeccCCccc-cccCH---HHHHHHHHHcCCEEEEecccccccccc---cchhhhhcCCCC
Q psy14299         84 EQTIQTSL-A-EKKIPLFVNATAGTTVLG-AFDPL---DEIATVCEKYDLWMHVDACWGGSLIFS---EKYSFVLKGINR  154 (448)
Q Consensus        84 e~~l~~~~-~-~~~~~~lVv~~~~~t~tG-~~~~l---~~I~~ia~~~g~~l~VD~A~~~~~~~~---~~~~~~~~~~~~  154 (448)
                      |+++.... + ..+.+++|++..-.+.+| .+.||   ++|.++|++||+.+|+|||.-+.+...   +..+ .+   +.
T Consensus       140 e~~ir~~~GD~H~p~T~LIclENT~~~~Gg~vlPle~~~~v~~lak~~glkLH~DGARi~NAavasgV~vk~-i~---~~  215 (384)
T KOG1368|consen  140 EAAIRVPKGDCHMPPTKLICLENTHNNCGGKVLPLEELDRVKALAKRHGLKLHMDGARIFNAAVASGVPVKK-IC---SA  215 (384)
T ss_pred             HHhhcCCCCCccCCCceEEEeeccccccCceEeeHHHHHHHHHHHhccCCeeecchhhhhhHHHHcCCCHHH-HH---Hh
Confidence            99998533 2 234577888877666666 66665   556789999999999999877655421   2111 11   24


Q ss_pred             ccEEEECCccccCCCCceEEEEEeccchhhhhccCCcccccccCcccccccCCCCCcccCCCCchhHHHHHHHHHhChHH
Q psy14299        155 ANSVSWNPHKMLGAPLQCSILLIKEKGLLHQANATAATYLFQQDKFYDVSFDTGDKSVQCGRKVDAFKLWLMWKARGNLG  234 (448)
Q Consensus       155 aD~~~~s~hK~l~~P~g~G~l~vr~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~g  234 (448)
                      +|++.++..|.|++|.|+-+  +.++.++.++..     +..              .+-++-|.           .    
T Consensus       216 fDSVsiCLSKglgAPVGSVi--VG~k~FI~kA~~-----~RK--------------alGGGmRQ-----------s----  259 (384)
T KOG1368|consen  216 FDSVSICLSKGLGAPVGSVI--VGSKDFIDKARH-----FRK--------------ALGGGMRQ-----------S----  259 (384)
T ss_pred             hhhhhhhhhccCCCCcccEE--EccHHHHHHHHH-----HHH--------------HhcCchhH-----------H----
Confidence            89999999999999986654  556555554321     100              00000010           0    


Q ss_pred             HHHHHHHhhhhccCCCccchhhhhhhhhhhhhhhhhhhhhhhccccccccccCCCCCccccccchhhHHHHHHHHHhcCc
Q psy14299        235 FRHFVDNAVDCSRGSMTFSTLLCFDLQGLLHQANATAATYLFQQDKFYDVSFDTGDKSVQCGRKVDAFKLWLMWKARGNL  314 (448)
Q Consensus       235 ~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  314 (448)
                                                 |++.+|..                                    ++++    +
T Consensus       260 ---------------------------GvLaaaaL------------------------------------val~----~  272 (384)
T KOG1368|consen  260 ---------------------------GVLAAAAL------------------------------------VALD----E  272 (384)
T ss_pred             ---------------------------HHHHHHHH------------------------------------HHhh----c
Confidence                                       11111110                                    0111    0


Q ss_pred             cHHHHHHHHHHHHHHHHHHhhcCCCeEEeccC-CceeeEEEEeeccCCCccccchhhhhhhhhhhHHHHHHHHhCCcEEE
Q psy14299        315 GFRHFVDNAVDCSRYFLSQISQRPGFRLVIPE-FQCTNICFWFIPVSLRDKVEDETWWSTLSKVAPRIKEKLVLGGTLMI  393 (448)
Q Consensus       315 G~~~~~~~~~~l~~~~~~~L~~~pg~~l~~~~-~~~~~v~f~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~L~~~g~~~~  393 (448)
                      -+ ....+.++.++.+.+.+++.+++++- .+ .+.+++...+.-+.++               ..++.+.+.+.|++.+
T Consensus       273 ~~-~~L~~dHk~A~~lAe~~~~~~~i~v~-v~a~etNiv~~~l~q~~~~---------------~~~l~~~~~k~gi~lm  335 (384)
T KOG1368|consen  273 NV-PLLRADHKRAKELAEYINTPEEIRVE-VPAVETNIVNMVLCQARLT---------------AEELCKFLEKNGILLM  335 (384)
T ss_pred             ch-HHHHHHHHHHHHHHHHhccccceeee-cchhhcceeeeecccccCC---------------HHHHHHHHHHCCeEEe
Confidence            11 14556677788888888887778774 23 4566666544323332               3478899999996655


Q ss_pred             EeeecCCcccccEEEEEecCCCCCCHHHHHHHHHHHH-HHHH
Q psy14299        394 GYQPLQHRNLHNFFRLVTTCHPASSRQDMDYAIDQIE-LRGA  434 (448)
Q Consensus       394 ~~~~~~g~~~~~~lRis~~~~~~~t~edid~l~~al~-~~~~  434 (448)
                      ....       ..+|+++  |+..|+++++.+...++ .+..
T Consensus       336 ~~~s-------~r~Rivl--h~Qvt~~~ve~~~~~~~k~~~~  368 (384)
T KOG1368|consen  336 GGAS-------RRIRIVL--HHQVTDEDVEYVKSVLSKKFLK  368 (384)
T ss_pred             eccc-------cceEEEE--EEecCHHHHHHHHHHHHHHHHh
Confidence            4322       4699999  99999999999999995 4433

>cd06502 TA_like Low-specificity threonine aldolase (TA)

Probab=99.86  E-value=3e-20  Score=185.70  Aligned_cols=160  Identities=18%  Similarity=0.230  Sum_probs=111.9

Q ss_pred             cEEEeCcHHHHHHHHHHHHHHhcCCcccccCCCCCCCeEEEecCCCchHHHHH---HHHhCCCCCcEEEEecCCCCCcCH
Q psy14299          4 KPFLLPGGSISNMYSICLARYRLDPDTKRKGLSHLPPLCMFTSEDSHYSMLKA---AHWLGIGMDNVIRVKTNERGQMIC   80 (448)
Q Consensus         4 ~g~~t~ggT~an~~al~~a~~~~~~~~~~~G~~~~~~~~Vl~~~~~H~s~~~~---~~~~g~~~~~v~~v~~~~~g~id~   80 (448)
                      .+++++|||++|..++.+...              +++.|++++..|.++.+.   +++.|.   +++.++.+. +.+|+
T Consensus        49 ~~~~~~~gt~a~~~~~~~l~~--------------~gd~v~~~~~~~~~~~~~~~~~~~~g~---~~~~v~~~~-~~~d~  110 (338)
T cd06502          49 AALFVPSGTAANQLALAAHTQ--------------PGGSVICHETAHIYTDEAGAPEFLSGV---KLLPVPGEN-GKLTP  110 (338)
T ss_pred             eEEEecCchHHHHHHHHHhcC--------------CCCeEEEecCcceeeecCCcHHHHcCc---eEEeecCCC-CcCCH
Confidence            578999999998888776543              567788999999887653   455677   788888754 78999


Q ss_pred             HHHHHHHHHhhhc-CCCcEEEEEeccCCccc--cccCHHHHHHHHHHcCCEEEEecccccccccccchhhhhcCCCCccE
Q psy14299         81 SFLEQTIQTSLAE-KKIPLFVNATAGTTVLG--AFDPLDEIATVCEKYDLWMHVDACWGGSLIFSEKYSFVLKGINRANS  157 (448)
Q Consensus        81 e~Le~~l~~~~~~-~~~~~lVv~~~~~t~tG--~~~~l~~I~~ia~~~g~~l~VD~A~~~~~~~~~~~~~~~~~~~~aD~  157 (448)
                      ++|++++++..+. ..++++|++++++++.|  ..+++++|.++|++||+++|||+||..+......... ......+|+
T Consensus       111 ~~l~~~i~~~~~~~~~~~~~v~l~~p~n~g~~~~~~~l~~i~~~~~~~~~~livDea~~~~~~~~~~~~~-~~~~~~~d~  189 (338)
T cd06502         111 EDLEAAIRPRDDIHFPPPSLVSLENTTEGGTVYPLDELKAISALAKENGLPLHLDGARLANAAAALGVAL-KTYKSGVDS  189 (338)
T ss_pred             HHHHHHhhccCCCcCCcceEEEEEeecCCccccCHHHHHHHHHHHHHcCCeEeechHHHHHHHHhcCCCH-HHHHhcCCE
Confidence            9999999652111 12578999999988633  3467888999999999999999997543221110000 000124789


Q ss_pred             EEECCccccCCCCceEEEEEeccchhh
Q psy14299        158 VSWNPHKMLGAPLQCSILLIKEKGLLH  184 (448)
Q Consensus       158 ~~~s~hK~l~~P~g~G~l~vr~~~~~~  184 (448)
                      ++.++||+++.|.|.  +++.+++...
T Consensus       190 ~~~s~sK~~~~~~g~--~~~~~~~~~~  214 (338)
T cd06502         190 VSFCLSKGGGAPVGA--VVVGNRDFIA  214 (338)
T ss_pred             EEEeccccCCCccce--EEECCHHHHH
Confidence            999999999988643  3333444433

This family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). TA catalyzes the conversion of L-threonine or L-allo-threonine to glycine and acetaldehyde in a secondary glycine biosynthetic pathway.

>PRK13392 5-aminolevulinate synthase; Provisional

Probab=99.85  E-value=5.9e-19  Score=181.59  Aligned_cols=288  Identities=14%  Similarity=0.161  Sum_probs=186.1

Q ss_pred             cEEEeCcHHHHHHHHHHHHHHhcCCcccccCCCCCCCeEEEecCCCchHHHHHHHHhCCCCCcEEEEecCCCCCcCHHHH
Q psy14299          4 KPFLLPGGSISNMYSICLARYRLDPDTKRKGLSHLPPLCMFTSEDSHYSMLKAAHWLGIGMDNVIRVKTNERGQMICSFL   83 (448)
Q Consensus         4 ~g~~t~ggT~an~~al~~a~~~~~~~~~~~G~~~~~~~~Vl~~~~~H~s~~~~~~~~g~~~~~v~~v~~~~~g~id~e~L   83 (448)
                      ..+++++|+++|..++......            .+++.|+++...|.++..+++..|.   ++..++.+     |++++
T Consensus       108 ~~i~~~sG~~a~~~~i~~l~~~------------~~g~~vi~~~~~h~s~~~~~~~~g~---~~~~~~~~-----d~~~l  167 (410)
T PRK13392        108 SALLFTSGYVSNDAALSTLGKL------------LPGCVILSDALNHASMIEGIRRSGA---EKQVFRHN-----DLADL  167 (410)
T ss_pred             CEEEECcHHHHHHHHHHHHhcC------------CCCCEEEEehhhhHHHHHHHHHcCC---eEEEEeCC-----CHHHH
Confidence            4678888899988887654321            1456788888899999998888887   56666543     67778


Q ss_pred             HHHHHHhhhcCCCcEEEEEeccCCccccccCHHHHHHHHHHcCCEEEEecccccccccccchhh-hhcC-CCCccEEEEC
Q psy14299         84 EQTIQTSLAEKKIPLFVNATAGTTVLGAFDPLDEIATVCEKYDLWMHVDACWGGSLIFSEKYSF-VLKG-INRANSVSWN  161 (448)
Q Consensus        84 e~~l~~~~~~~~~~~lVv~~~~~t~tG~~~~l~~I~~ia~~~g~~l~VD~A~~~~~~~~~~~~~-~~~~-~~~aD~~~~s  161 (448)
                      ++.+++..  ..++++|++++++|++|.+.|+++|.++|++||++++||+||+.+.+....... ...+ ....|+++.+
T Consensus       168 ~~~l~~~~--~~~t~~v~i~~~~n~tG~~~~l~~i~~l~~~~~~~livDea~~~g~~g~~g~g~~~~~~~~~~~div~~t  245 (410)
T PRK13392        168 EEQLASVD--PDRPKLIAFESVYSMDGDIAPIEAICDLADRYNALTYVDEVHAVGLYGARGGGIAERDGLMDRIDMIQGT  245 (410)
T ss_pred             HHHHHhcc--CCCCEEEEEeCCCCCCcccccHHHHHHHHHHcCCEEEEECCccccCcCCCCCchhhhccCCCCCcEEEEE
Confidence            88776431  236789999999999999999999999999999999999999966542110000 0111 1246888889


Q ss_pred             CccccCCCCceEEEEEeccchhhhhccCCcccccccCcccccccCCCCCcccCCCCchhHHHHHHHHHhChHHHHHHHHH
Q psy14299        162 PHKMLGAPLQCSILLIKEKGLLHQANATAATYLFQQDKFYDVSFDTGDKSVQCGRKVDAFKLWLMWKARGNLGFRHFVDN  241 (448)
Q Consensus       162 ~hK~l~~P~g~G~l~vr~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~g~~~~i~~  241 (448)
                      ++|+++.+.  |++.. +++..........+|..+..                   ...                     
T Consensus       246 lsK~~g~~G--G~~~~-~~~~~~~l~~~~~~~~~s~~-------------------~~~---------------------  282 (410)
T PRK13392        246 LAKAFGCLG--GYIAA-SADLIDFVRSFAPGFIFTTA-------------------LPP---------------------  282 (410)
T ss_pred             ChHhhhccc--chhhc-CHHHHHHHHHhCcchhccCc-------------------CCH---------------------
Confidence            999998764  45444 44443332222222221110                   000                     


Q ss_pred             hhhhccCCCccchhhhhhhhhhhhhhhhhhhhhhhccccccccccCCCCCccccccchhhHHHHHHHHHhcCccHHHHHH
Q psy14299        242 AVDCSRGSMTFSTLLCFDLQGLLHQANATAATYLFQQDKFYDVSFDTGDKSVQCGRKVDAFKLWLMWKARGNLGFRHFVD  321 (448)
Q Consensus       242 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~  321 (448)
                                                                               +.+.++..+++.....+  ...+
T Consensus       283 ---------------------------------------------------------~~~~a~~aaL~~~~~~~--~~~~  303 (410)
T PRK13392        283 ---------------------------------------------------------AVAAGATAAIRHLKTSQ--TERD  303 (410)
T ss_pred             ---------------------------------------------------------HHHHHHHHHHHHHhcCH--HHHH
Confidence                                                                     01112223333333322  3446


Q ss_pred             HHHHHHHHHHHHhhcCCCeEEeccCCceeeEEEEeeccCCCccccchhhhhhhhhhhHHHHHHHH-hCCcEEEEeeecCC
Q psy14299        322 NAVDCSRYFLSQISQRPGFRLVIPEFQCTNICFWFIPVSLRDKVEDETWWSTLSKVAPRIKEKLV-LGGTLMIGYQPLQH  400 (448)
Q Consensus       322 ~~~~l~~~~~~~L~~~pg~~l~~~~~~~~~v~f~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~L~-~~g~~~~~~~~~~g  400 (448)
                      +..++++++.+.|+++ |+++.  ++..+++.+.+ +..               ....++.+.|. ++| +++.+.....
T Consensus       304 ~~~~~~~~l~~~L~~~-g~~~~--~~~~~~~~i~~-~~~---------------~~~~~~~~~L~~~~G-I~v~~~~~p~  363 (410)
T PRK13392        304 AHQDRVAALKAKLNAN-GIPVM--PSPSHIVPVMV-GDP---------------TLCKAISDRLMSEHG-IYIQPINYPT  363 (410)
T ss_pred             HHHHHHHHHHHHHHHc-CCCCC--CCCCCEEEEEe-CCH---------------HHHHHHHHHHHHhCC-EEEeeeCCCC
Confidence            6778889999999987 88864  45555554432 100               01247888887 567 5555432211


Q ss_pred             c-ccccEEEEEecCCCCCCHHHHHHHHHHHHHHHHHhH
Q psy14299        401 R-NLHNFFRLVTTCHPASSRQDMDYAIDQIELRGAEVD  437 (448)
Q Consensus       401 ~-~~~~~lRis~~~~~~~t~edid~l~~al~~~~~~~~  437 (448)
                      . ....++|+++  |.++|++|+|+++++|+++.++++
T Consensus       364 ~~~~~~~lRis~--~~~~t~edid~l~~aL~~~~~~~~  399 (410)
T PRK13392        364 VPRGTERLRITP--TPLHDDEDIDALVAALVAIWDRLE  399 (410)
T ss_pred             CCCCCceEEEEE--CCCCCHHHHHHHHHHHHHHHHHcC
Confidence            1 0126899999  789999999999999999987653

>TIGR01437 selA_rel uncharacterized pyridoxal phosphate-dependent enzyme

Probab=99.85  E-value=4.4e-19  Score=179.53  Aligned_cols=154  Identities=16%  Similarity=0.124  Sum_probs=107.3

Q ss_pred             cEEEeCcHHHHHHHHHHHHHHhcCCcccccCCC--CCCCeEEEecCCCchHH-----HHHHHHhCCCCCcEEEEecCCCC
Q psy14299          4 KPFLLPGGSISNMYSICLARYRLDPDTKRKGLS--HLPPLCMFTSEDSHYSM-----LKAAHWLGIGMDNVIRVKTNERG   76 (448)
Q Consensus         4 ~g~~t~ggT~an~~al~~a~~~~~~~~~~~G~~--~~~~~~Vl~~~~~H~s~-----~~~~~~~g~~~~~v~~v~~~~~g   76 (448)
                      .+++|+|+|+++.+++.+...+-......+ +.  ..+++.|+++. .|+..     ...+.+.|.   +++.++.  ++
T Consensus        62 ~~~~~~g~t~al~~al~al~~~Gd~~~~~~-~~~s~~~~~eVi~~~-~~~~~~~~~~~~~~~~~g~---~~v~v~~--~~  134 (363)
T TIGR01437        62 DAVIVSSASAGIAQSVAAVITRGNRYLVEN-LHDSKIEVNEVVLPK-GHNVDYGAPVETMVRLGGG---KVVEAGY--AN  134 (363)
T ss_pred             eEEEEcCHHHHHHHHHHHHhcCCCcchhhc-ccccccccceEEEEC-ccchhcCCchHHHHHhcCC---eEEEEcC--CC
Confidence            468999999999999887754300000000 00  01233577765 55543     356667777   6767765  46


Q ss_pred             CcCHHHHHHHHHHhhhcCCCcEEEE-EeccCCccccccCHHHHHHHHHHcCCEEEEecccccccccccchhhhhcCCCCc
Q psy14299         77 QMICSFLEQTIQTSLAEKKIPLFVN-ATAGTTVLGAFDPLDEIATVCEKYDLWMHVDACWGGSLIFSEKYSFVLKGINRA  155 (448)
Q Consensus        77 ~id~e~Le~~l~~~~~~~~~~~lVv-~~~~~t~tG~~~~l~~I~~ia~~~g~~l~VD~A~~~~~~~~~~~~~~~~~~~~a  155 (448)
                      .+|++++++++.+      ++++++ ++.+.+++|.+.|+++|+++||+||+++++|+||+...   .  .  .... ++
T Consensus       135 ~~d~~~le~ai~~------~t~ai~~v~~~~~~~g~~~~~~~i~~~a~~~gi~vivD~a~~~~~---~--~--~~~~-g~  200 (363)
T TIGR01437       135 ECSAEQLEAAITE------KTAAILYIKSHHCVQKSMLSVEDAAQVAQEHNLPLIVDAAAEEDL---Q--K--YYRL-GA  200 (363)
T ss_pred             CCCHHHHHHhcCh------hceEEEEEecCCCCcCCcCCHHHHHHHHHHcCCeEEEECCCCCch---H--H--HHHc-CC
Confidence            7999999999965      466655 45667789999999999999999999999999998321   1  0  0111 37


Q ss_pred             cEEEECCccccCCCCceEEEEEec
Q psy14299        156 NSVSWNPHKMLGAPLQCSILLIKE  179 (448)
Q Consensus       156 D~~~~s~hK~l~~P~g~G~l~vr~  179 (448)
                      |++++|+||++++|. .|+++.++
T Consensus       201 D~~~~S~~K~l~gp~-~G~l~~~~  223 (363)
T TIGR01437       201 DLVIYSGAKAIEGPT-SGLVLGKK  223 (363)
T ss_pred             CEEEEeCCcccCCCc-eEEEEEcH
Confidence            999999999999998 77776543

This model describes a protein related to a number of pyridoxal phosphate-dependent enzymes, and in particular to selenocysteine synthase (SelA), which converts Ser to selenocysteine on its tRNA. While resembling SelA, this protein is found only in species that have a better candidate SelA or else lack the other genes (selB, selC, and selD) required for selenocysteine incorporation.

>PRK13034 serine hydroxymethyltransferase; Reviewed

Probab=99.85  E-value=1.9e-19  Score=185.39  Aligned_cols=286  Identities=13%  Similarity=0.123  Sum_probs=181.5

Q ss_pred             EEeCcHHHHHHHHHHHHHHhcCCcccccCCCCCCCeEEEecCCCchH-HHHHHHHhCCCCCcE--EEEecCC-CCCcCHH
Q psy14299          6 FLLPGGSISNMYSICLARYRLDPDTKRKGLSHLPPLCMFTSEDSHYS-MLKAAHWLGIGMDNV--IRVKTNE-RGQMICS   81 (448)
Q Consensus         6 ~~t~ggT~an~~al~~a~~~~~~~~~~~G~~~~~~~~Vl~~~~~H~s-~~~~~~~~g~~~~~v--~~v~~~~-~g~id~e   81 (448)
                      +++++||+||+.++.+...              +++.|+++...|.+ +..+++....+. .+  ..++++. ++.+|++
T Consensus        94 v~~~SG~~A~~~~l~al~~--------------~GD~Vl~~~~~~~~~~~~g~~~~~~~~-~~~~~~~~~~~~~~~~d~~  158 (416)
T PRK13034         94 VQPHSGSQANGAVYLALLK--------------PGDTILGMSLSHGGHLTHGAKVSLSGK-WYNAVQYGVDRLTGLIDYD  158 (416)
T ss_pred             EecCCcHHHHHHHHHHhcC--------------CCCEEEEcCccceeeeecCCcceeccc-eeeeEEcccccccCCcCHH
Confidence            4578999999988877633              67889999999988 444444321110 12  2344432 4679999


Q ss_pred             HHHHHHHHhhhcCCCcEEEEEeccCCccccccCHHHHHHHHHHcCCEEEEecccccccccccchhhhhcCCCCccEEEEC
Q psy14299         82 FLEQTIQTSLAEKKIPLFVNATAGTTVLGAFDPLDEIATVCEKYDLWMHVDACWGGSLIFSEKYSFVLKGINRANSVSWN  161 (448)
Q Consensus        82 ~Le~~l~~~~~~~~~~~lVv~~~~~t~tG~~~~l~~I~~ia~~~g~~l~VD~A~~~~~~~~~~~~~~~~~~~~aD~~~~s  161 (448)
                      ++++.+++.     ++++|+++.  +.+|...|+++|.++|++||++++||+||+.|....+...   ..+..+|+++++
T Consensus       159 ~le~~l~~~-----~~klVi~~~--~~~g~~~dl~~l~~la~~~g~~livD~Aha~G~~~~g~~~---~~~~~~Di~~~s  228 (416)
T PRK13034        159 EVEELAKEH-----KPKLIIAGF--SAYPRELDFARFREIADEVGALLMVDMAHIAGLVAAGEHP---NPFPHAHVVTTT  228 (416)
T ss_pred             HHHHHHhhc-----CCeEEEECC--CccccccCHHHHHHHHHHcCCEEEEeCcccccCcccCCCC---CCCCCceEEEEe
Confidence            999998651     467776654  3468888999999999999999999999999887544321   122358999999


Q ss_pred             CccccCCCCceEEEEEeccchhhhhccCCcccccccCcccccccCCCCCcccCCCCchhHHHHHHHHHhChHHHHHHHHH
Q psy14299        162 PHKMLGAPLQCSILLIKEKGLLHQANATAATYLFQQDKFYDVSFDTGDKSVQCGRKVDAFKLWLMWKARGNLGFRHFVDN  241 (448)
Q Consensus       162 ~hK~l~~P~g~G~l~vr~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~g~~~~i~~  241 (448)
                      +||++.+|.| |+++.+++.+......    +.+..              .+.+.....                     
T Consensus       229 ~~K~l~g~~G-G~v~~~~~~~~~~~~~----~~~~~--------------~~~~~~~~~---------------------  268 (416)
T PRK13034        229 THKTLRGPRG-GMILTNDEEIAKKINS----AVFPG--------------LQGGPLMHV---------------------  268 (416)
T ss_pred             CcccCCCCCC-eEEEECcHHHHHHHHh----hcCCc--------------ccCCccHHH---------------------
Confidence            9999988887 4444544433222111    11100              000000000                     


Q ss_pred             hhhhccCCCccchhhhhhhhhhhhhhhhhhhhhhhccccccccccCCCCCccccccchhhHHHHHHHHHhcCccHHHHHH
Q psy14299        242 AVDCSRGSMTFSTLLCFDLQGLLHQANATAATYLFQQDKFYDVSFDTGDKSVQCGRKVDAFKLWLMWKARGNLGFRHFVD  321 (448)
Q Consensus       242 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~  321 (448)
                                                                                 ..++..++...-..+..++.+
T Consensus       269 -----------------------------------------------------------~aa~~~al~~~~~~~~~~~~~  289 (416)
T PRK13034        269 -----------------------------------------------------------IAAKAVAFGEALQPEFKTYAK  289 (416)
T ss_pred             -----------------------------------------------------------HHHHHHHHHHHhChhHHHHHH
Confidence                                                                       001111122211223445678


Q ss_pred             HHHHHHHHHHHHhhcCCCeEEeccC-CceeeEEEEeeccCCCccccchhhhhhhhhhhHHHHHHHHhCCcEEEEeeecCC
Q psy14299        322 NAVDCSRYFLSQISQRPGFRLVIPE-FQCTNICFWFIPVSLRDKVEDETWWSTLSKVAPRIKEKLVLGGTLMIGYQPLQH  400 (448)
Q Consensus       322 ~~~~l~~~~~~~L~~~pg~~l~~~~-~~~~~v~f~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~L~~~g~~~~~~~~~~g  400 (448)
                      +..++++++++.|.++ |+++. .+ .+.+++.+.+...+..               ...+.+.|.+.| +++......+
T Consensus       290 ~l~~~a~~l~~~L~~~-G~~~~-~~~~~t~i~~v~~~~~~~~---------------~~~~~~~L~~~G-I~v~~~~~p~  351 (416)
T PRK13034        290 QVIANAQALAEVLKER-GYDLV-SGGTDNHLLLVDLRPKGLS---------------GKDAEQALERAG-ITVNKNTVPG  351 (416)
T ss_pred             HHHHHHHHHHHHHHHc-CCEec-cCCCCCcEEEEEcCCCCCC---------------HHHHHHHHHhCC-cEEeccCCCC
Confidence            8999999999999998 99986 32 4567766655332221               125567888888 5554311111


Q ss_pred             ----cccccEEEEEecCCC----CCCHHHHHHHHHHHHHHHHH
Q psy14299        401 ----RNLHNFFRLVTTCHP----ASSRQDMDYAIDQIELRGAE  435 (448)
Q Consensus       401 ----~~~~~~lRis~~~~~----~~t~edid~l~~al~~~~~~  435 (448)
                          ...+..+|+++  |.    .++++|+++++++|+++..+
T Consensus       352 ~~~~p~~~~~lR~~~--~~~t~~~~~~~di~~l~~~l~~~~~~  392 (416)
T PRK13034        352 DTESPFVTSGIRIGT--PAGTTRGFGEAEFREIANWILDVLDD  392 (416)
T ss_pred             CCcCCCCCCeeEeCc--HHHHhCCCCHHHHHHHHHHHHHHHhc
Confidence                10125799998  66    56699999999999988764

>PRK09064 5-aminolevulinate synthase; Validated

Probab=99.85  E-value=8.9e-19  Score=180.02  Aligned_cols=288  Identities=12%  Similarity=0.138  Sum_probs=187.5

Q ss_pred             cEEEeCcHHHHHHHHHHHHHHhcCCcccccCCCCCCCeEEEecCCCchHHHHHHHHhCCCCCcEEEEecCCCCCcCHHHH
Q psy14299          4 KPFLLPGGSISNMYSICLARYRLDPDTKRKGLSHLPPLCMFTSEDSHYSMLKAAHWLGIGMDNVIRVKTNERGQMICSFL   83 (448)
Q Consensus         4 ~g~~t~ggT~an~~al~~a~~~~~~~~~~~G~~~~~~~~Vl~~~~~H~s~~~~~~~~g~~~~~v~~v~~~~~g~id~e~L   83 (448)
                      ..++.++|+++|..++..++..            .++++|+.+...|.++..+++..+.   ++..++.+     |+++|
T Consensus       108 ~~~~~~sG~~an~~ai~~l~~~------------~~~~~i~~~~~~h~s~~~~~~~~~~---~~~~~~~~-----d~~~l  167 (407)
T PRK09064        108 AALVFTSGYVSNDATLSTLAKL------------IPDCVIFSDELNHASMIEGIRRSRC---EKHIFRHN-----DVAHL  167 (407)
T ss_pred             cEEEECcHHHHHHHHHHHHhCC------------CCCCEEEEeCcchHHHHHHHHHcCC---cEEEECCC-----CHHHH
Confidence            4578888999999888776542            1556788888899999999988777   56566653     88999


Q ss_pred             HHHHHHhhhcCCCcEEEEEeccCCccccccCHHHHHHHHHHcCCEEEEeccccccccc-ccchhhhhcCC-CCccEEEEC
Q psy14299         84 EQTIQTSLAEKKIPLFVNATAGTTVLGAFDPLDEIATVCEKYDLWMHVDACWGGSLIF-SEKYSFVLKGI-NRANSVSWN  161 (448)
Q Consensus        84 e~~l~~~~~~~~~~~lVv~~~~~t~tG~~~~l~~I~~ia~~~g~~l~VD~A~~~~~~~-~~~~~~~~~~~-~~aD~~~~s  161 (448)
                      ++.++..  ...++++|+++++.+++|.+.|+++|.++|++||++++||+||+.|.+. ....-....++ ...|+++.+
T Consensus       168 e~~l~~~--~~~~~~~v~~~~v~s~~G~~~~l~~i~~l~~~~~~~livDEa~~~G~~g~~g~g~~~~~~~~~~~div~~t  245 (407)
T PRK09064        168 EELLAAA--DPDRPKLIAFESVYSMDGDIAPIAEICDLADKYNALTYLDEVHAVGMYGPRGGGIAERDGLMDRIDIIEGT  245 (407)
T ss_pred             HHHHHhc--cCCCCeEEEEeCCCCCCccccCHHHHHHHHHHcCCEEEEECCCcccccCCCCCChHHhcCCCCCCeEEEEe
Confidence            9988642  1135789999999999999999999999999999999999999865431 11000011122 235888889


Q ss_pred             CccccCCCCceEEEEEeccchhhhhccCCcccccccCcccccccCCCCCcccCCCCchhHHHHHHHHHhChHHHHHHHHH
Q psy14299        162 PHKMLGAPLQCSILLIKEKGLLHQANATAATYLFQQDKFYDVSFDTGDKSVQCGRKVDAFKLWLMWKARGNLGFRHFVDN  241 (448)
Q Consensus       162 ~hK~l~~P~g~G~l~vr~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~g~~~~i~~  241 (448)
                      ++|.++.+.  |+++. ++++.........+|.+...                 ..  .                     
T Consensus       246 ~sKa~g~~G--G~~~~-~~~~~~~l~~~~~~~~~t~~-----------------~~--~---------------------  282 (407)
T PRK09064        246 LAKAFGVMG--GYIAG-SAALVDAVRSYAPGFIFTTS-----------------LP--P---------------------  282 (407)
T ss_pred             cchhhhccC--ceEec-CHHHHHHHHHhCccccccCc-----------------CC--H---------------------
Confidence            999997653  55544 43433332221122221100                 00  0                     


Q ss_pred             hhhhccCCCccchhhhhhhhhhhhhhhhhhhhhhhccccccccccCCCCCccccccchhhHHHHHHHHHhcCccHHHHHH
Q psy14299        242 AVDCSRGSMTFSTLLCFDLQGLLHQANATAATYLFQQDKFYDVSFDTGDKSVQCGRKVDAFKLWLMWKARGNLGFRHFVD  321 (448)
Q Consensus       242 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~  321 (448)
                                                                               +...++..+++++...  +...+
T Consensus       283 ---------------------------------------------------------~~~~aa~~al~~~~~~--~~~~~  303 (407)
T PRK09064        283 ---------------------------------------------------------AIAAAALASIRHLKES--NEERE  303 (407)
T ss_pred             ---------------------------------------------------------HHHHHHHHHHHHHhcC--HHHHH
Confidence                                                                     0011122233333333  23456


Q ss_pred             HHHHHHHHHHHHhhcCCCeEEeccCCceeeEEEEeeccCCCccccchhhhhhhhhhhHHHHHHHHhC-CcEEEEeeecCC
Q psy14299        322 NAVDCSRYFLSQISQRPGFRLVIPEFQCTNICFWFIPVSLRDKVEDETWWSTLSKVAPRIKEKLVLG-GTLMIGYQPLQH  400 (448)
Q Consensus       322 ~~~~l~~~~~~~L~~~pg~~l~~~~~~~~~v~f~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~L~~~-g~~~~~~~~~~g  400 (448)
                      +..++++++.+.|+++ |++++  ++..+++.+.+. ..               ....++.+.|.++ | +++.+.....
T Consensus       304 ~~~~~~~~l~~~L~~~-g~~~~--~~~~~iv~i~~~-~~---------------~~~~~l~~~L~~~~g-i~v~~~~~p~  363 (407)
T PRK09064        304 RHQERAAKLKAALDAA-GIPVM--PNESHIVPVMVG-DP---------------EKCKKASDMLLEEHG-IYVQPINYPT  363 (407)
T ss_pred             HHHHHHHHHHHHHHHc-CCCCC--CCCCCEEEEEeC-CH---------------HHHHHHHHHHHHhCC-EEEeeECCCC
Confidence            7788899999999997 88875  344555555431 00               0124688888754 7 5555432211


Q ss_pred             c-ccccEEEEEecCCCCCCHHHHHHHHHHHHHHHHHhH
Q psy14299        401 R-NLHNFFRLVTTCHPASSRQDMDYAIDQIELRGAEVD  437 (448)
Q Consensus       401 ~-~~~~~lRis~~~~~~~t~edid~l~~al~~~~~~~~  437 (448)
                      . ....++|+++  +.++|++|+++++++|+++.+++.
T Consensus       364 ~~~~~~~lRis~--~~~~t~edi~~l~~~l~~~~~~~~  399 (407)
T PRK09064        364 VPRGTERLRITP--TPFHTDEMIDHLVEALVEVWARLG  399 (407)
T ss_pred             CCCCCceEEEEe--CCCCCHHHHHHHHHHHHHHHHHcC
Confidence            1 1126899999  789999999999999999987654

>cd00609 AAT_like Aspartate aminotransferase family

Probab=99.84  E-value=3.2e-19  Score=178.05  Aligned_cols=159  Identities=16%  Similarity=0.128  Sum_probs=119.3

Q ss_pred             ccEEEeCcHHHHHHHHHHHHHHhcCCcccccCCCCCCCeEEEecCCCchHHHHHHHHhCCCCCcEEEEecCCCCCcCH--
Q psy14299          3 LKPFLLPGGSISNMYSICLARYRLDPDTKRKGLSHLPPLCMFTSEDSHYSMLKAAHWLGIGMDNVIRVKTNERGQMIC--   80 (448)
Q Consensus         3 ~~g~~t~ggT~an~~al~~a~~~~~~~~~~~G~~~~~~~~Vl~~~~~H~s~~~~~~~~g~~~~~v~~v~~~~~g~id~--   80 (448)
                      ...++++|+|+++..++..+..              +++.|+++...|.++..+++..|.   ++..++.++++..+.  
T Consensus        60 ~~~~~~~~~t~a~~~~~~~~~~--------------~g~~vl~~~~~~~~~~~~~~~~~~---~~~~i~~~~~~~~~~~~  122 (350)
T cd00609          60 EEIVVTNGAQEALSLLLRALLN--------------PGDEVLVPDPTYPGYEAAARLAGA---EVVPVPLDEEGGFLLDL  122 (350)
T ss_pred             ceEEEecCcHHHHHHHHHHhCC--------------CCCEEEEcCCCchhHHHHHHHCCC---EEEEEecccccCCccCH
Confidence            3578999999998877766543              456799999999999999999987   799999988887765  


Q ss_pred             HHHHHHHHHhhhcCCCcEEEEEeccCCccccccCHHHHH---HHHHHcCCEEEEecccccccccccchhh-hhcCCCCcc
Q psy14299         81 SFLEQTIQTSLAEKKIPLFVNATAGTTVLGAFDPLDEIA---TVCEKYDLWMHVDACWGGSLIFSEKYSF-VLKGINRAN  156 (448)
Q Consensus        81 e~Le~~l~~~~~~~~~~~lVv~~~~~t~tG~~~~l~~I~---~ia~~~g~~l~VD~A~~~~~~~~~~~~~-~~~~~~~aD  156 (448)
                      +.+++...      .++++|+++++++++|.+.|++++.   ++|+++|+++++|+||+++......... ........|
T Consensus       123 ~~~~~~~~------~~~~~v~i~~~~~~tG~~~~~~~l~~l~~~~~~~~~~~ivD~a~~~~~~~~~~~~~~~~~~~~~~~  196 (350)
T cd00609         123 ELLEAAKT------PKTKLLYLNNPNNPTGAVLSEEELEELAELAKKHGILIISDEAYAELVYDGEPPPALALLDAYERV  196 (350)
T ss_pred             HHHHhhcC------ccceEEEEECCCCCCCcccCHHHHHHHHHHHHhCCeEEEEecchhhceeCCcccccccCcCccCcE
Confidence            55554432      3688999999999999999866555   8999999999999999876643221100 001122468


Q ss_pred             EEEECCccccC-CCCceEEEEEeccchhh
Q psy14299        157 SVSWNPHKMLG-APLQCSILLIKEKGLLH  184 (448)
Q Consensus       157 ~~~~s~hK~l~-~P~g~G~l~vr~~~~~~  184 (448)
                      +++.++||+++ .+.+.|+++++++.+..
T Consensus       197 ~~~~s~~K~~~~~g~~~G~i~~~~~~~~~  225 (350)
T cd00609         197 IVLRSFSKTFGLPGLRIGYLIAPPEELLE  225 (350)
T ss_pred             EEEeecccccCCcccceEEEecCHHHHHH
Confidence            99999999998 55678888876644433

This family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). Pyridoxal phosphate combines with an alpha-amino acid to form a compound called a Schiff base or aldimine intermediate, which depending on the reaction, is the substrate in four kinds of reactions (1) transamination (movement of amino groups), (2) racemization (redistribution of enantiomers), (3) decarboxylation (removing COOH groups), and (4) various side-chain reactions depending on the enzyme involved. Pyridoxal phosphate (PLP) dependent enzymes were previously classified into alpha, beta and gamma classes, based on the chemical characteristics (carbon atom involved) of the reaction they catalyzed. The availability of several structures allowed a comprehensive analysis of the evolutionary classification of PLP dependent enzymes, and it was found that the functional classification did not always agree with the evolutionary hi

>KOG2862|consensus

Probab=99.84  E-value=5.5e-19  Score=166.71  Aligned_cols=282  Identities=15%  Similarity=0.179  Sum_probs=200.9

Q ss_pred             CCeEEEecCCCchH--HHHHHHHhCCCCCcEEEEecCCCCCcCHHHHHHHHHHhhhcCCCcEEEEEeccCCccccccC-H
Q psy14299         39 PPLCMFTSEDSHYS--MLKAAHWLGIGMDNVIRVKTNERGQMICSFLEQTIQTSLAEKKIPLFVNATAGTTVLGAFDP-L  115 (448)
Q Consensus        39 ~~~~Vl~~~~~H~s--~~~~~~~~g~~~~~v~~v~~~~~g~id~e~Le~~l~~~~~~~~~~~lVv~~~~~t~tG~~~~-l  115 (448)
                      |++.|++-...-.+  +.+.++.+|+   +|..++.+.++...+|.+++.|.+     .+|++|.++|+.+.||+++| +
T Consensus        91 Pgd~vLv~~~G~wg~ra~D~~~r~ga---~V~~v~~~~G~~~~le~i~~~lsq-----h~p~~vfv~hgdsSTgV~q~~~  162 (385)
T KOG2862|consen   91 PGDNVLVVSTGTWGQRAADCARRYGA---EVDVVEADIGQAVPLEEITEKLSQ-----HKPKAVFVTHGDSSTGVLQDLL  162 (385)
T ss_pred             CCCeEEEEEechHHHHHHHHHHhhCc---eeeEEecCcccCccHHHHHHHHHh-----cCCceEEEEecCccccccchHH
Confidence            66666666555544  5577788888   899999999999999999999987     47999999999999999999 6


Q ss_pred             HHHHHHHHHcCCEEEEeccccccccc--ccchhhhhcCCCCccEEEECCccccCCCCceEEEEEeccchhhhhccC---C
Q psy14299        116 DEIATVCEKYDLWMHVDACWGGSLIF--SEKYSFVLKGINRANSVSWNPHKMLGAPLQCSILLIKEKGLLHQANAT---A  190 (448)
Q Consensus       116 ~~I~~ia~~~g~~l~VD~A~~~~~~~--~~~~~~~~~~~~~aD~~~~s~hK~l~~P~g~G~l~vr~~~~~~~~~~~---~  190 (448)
                      +.+.++||+|+++++||+..+.|...  .|+|        ++|+.-..++|.|++|.|.+.+..+++. +......   .
T Consensus       163 ~~~g~lc~k~~~lllVD~VaSlggt~F~mDew--------gVDvaytgSQKaL~aP~GLsiisfS~ka-~~~~~~rK~~~  233 (385)
T KOG2862|consen  163 AISGELCHKHEALLLVDTVASLGGTEFEMDEW--------GVDVAYTGSQKALGAPAGLSIISFSDKA-LEAIRDRKTKP  233 (385)
T ss_pred             HHHHHHhhcCCeEEEEechhhcCCccceehhh--------cccEEEecchhhcCCCCCcceeecCHHH-HHHHhhccCCc
Confidence            77889999999999999977766553  3444        4799999999999999999997776654 3333221   1


Q ss_pred             cccccccCcccccccCCCCCcccCCCCchhHHHHHHHHHhChHHHHHHHHHhhhhccCCCccchhhhhhhhhhhhhhhhh
Q psy14299        191 ATYLFQQDKFYDVSFDTGDKSVQCGRKVDAFKLWLMWKARGNLGFRHFVDNAVDCSRGSMTFSTLLCFDLQGLLHQANAT  270 (448)
Q Consensus       191 ~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~g~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  270 (448)
                      ..|+++.-.       ++.+                |.-.|..                                     
T Consensus       234 ~~~yFd~~~-------~~~~----------------wgc~~e~-------------------------------------  253 (385)
T KOG2862|consen  234 VSFYFDILR-------LGNF----------------WGCDGEP-------------------------------------  253 (385)
T ss_pred             eEEEEeHHh-------hcch----------------hccCCcc-------------------------------------
Confidence            223322110       0000                0000000                                     


Q ss_pred             hhhhhhccccccccccCCCCCccccccchhhHHHHHHHHHhcCccHHHHHHHHHHHHHHHHHHhhcCCCeEEec--cCCc
Q psy14299        271 AATYLFQQDKFYDVSFDTGDKSVQCGRKVDAFKLWLMWKARGNLGFRHFVDNAVDCSRYFLSQISQRPGFRLVI--PEFQ  348 (448)
Q Consensus       271 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~~l~~~~~~~L~~~pg~~l~~--~~~~  348 (448)
                                         .....-+++-....+.++|..+-++|++++++++.+++++++..|+++ |++++.  .+++
T Consensus       254 -------------------~~yhhT~pv~lly~Lr~AL~~I~eeGL~~~~~rH~e~s~~l~~~l~~~-GLq~fv~~e~~r  313 (385)
T KOG2862|consen  254 -------------------RAYHHTPPVQLLYSLRAALALIAEEGLENSWRRHREMSKWLKLSLEAL-GLQLFVVDEELR  313 (385)
T ss_pred             -------------------cccccCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CccceecChhhc
Confidence                               000011123335566678888889999999999999999999999998 988762  2334


Q ss_pred             eeeEEEEeeccCCCccccchhhhhhhhhhhHHHHHHHHhCCcEEEEeeecCCcccccEEEEEecCCCCCCHHHHHHHHHH
Q psy14299        349 CTNICFWFIPVSLRDKVEDETWWSTLSKVAPRIKEKLVLGGTLMIGYQPLQHRNLHNFFRLVTTCHPASSRQDMDYAIDQ  428 (448)
Q Consensus       349 ~~~v~f~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~L~~~g~~~~~~~~~~g~~~~~~lRis~~~~~~~t~edid~l~~a  428 (448)
                      .+.+.-...|.+++               .+++..++..++.+.+.++-  |.-.+.++||+++ ....+.|-|++.++.
T Consensus       314 lptvttv~vp~gvD---------------w~dVv~~~~~~~~vei~ggl--g~~~gKv~RIGl~-gcna~~e~i~~v~~l  375 (385)
T KOG2862|consen  314 LPTVTTVKVPYGVD---------------WKDVVAYAMSHYVVEIGGGL--GPTVGKVFRIGLL-GCNANVEYIDNVVEL  375 (385)
T ss_pred             cCcceeeecCCCCC---------------HHHHHHHHHHhcCEEecccc--CCCcccEEEEEEe-eccCCcHHHHHHHHH
Confidence            55555555566664               23788999999766665431  1112369999999 588899999999999


Q ss_pred             HHHHHHH
Q psy14299        429 IELRGAE  435 (448)
Q Consensus       429 l~~~~~~  435 (448)
                      |+...+.
T Consensus       376 l~~alq~  382 (385)
T KOG2862|consen  376 LKLALQR  382 (385)
T ss_pred             HHHHHhh
Confidence            9877654

>PRK13393 5-aminolevulinate synthase; Provisional

Probab=99.84  E-value=2.5e-18  Score=176.78  Aligned_cols=285  Identities=15%  Similarity=0.130  Sum_probs=185.4

Q ss_pred             cEEEeCcHHHHHHHHHHHHHHhcCCcccccCCCCCCCeEEEecCCCchHHHHHHHHhCCCCCcEEEEecCCCCCcCHHHH
Q psy14299          4 KPFLLPGGSISNMYSICLARYRLDPDTKRKGLSHLPPLCMFTSEDSHYSMLKAAHWLGIGMDNVIRVKTNERGQMICSFL   83 (448)
Q Consensus         4 ~g~~t~ggT~an~~al~~a~~~~~~~~~~~G~~~~~~~~Vl~~~~~H~s~~~~~~~~g~~~~~v~~v~~~~~g~id~e~L   83 (448)
                      .+++.++|+++|..++......            .++++|+++...|.++..+++..|.   ++..++.+     |++++
T Consensus       107 ~~~~~~SG~~An~~ai~~l~~~------------~~g~~I~~~~~~H~s~~~~~~~~g~---~~~~~~~~-----d~~~l  166 (406)
T PRK13393        107 AALLFTSGYVSNWAALSTLGSR------------LPGCVILSDELNHASMIEGIRHSRA---EKRIFRHN-----DPADL  166 (406)
T ss_pred             cEEEeCCcHHHHHHHHHHhhcC------------CCCCEEEEccchhHHHHHHHHHcCC---eEEEeCCC-----CHHHH
Confidence            4678888899999998754332            1456788889999999999988776   56667654     88899


Q ss_pred             HHHHHHhhhcCCCcEEEEEeccCCccccccCHHHHHHHHHHcCCEEEEecccccccc-cccchhhhhcCC-CCccEEEEC
Q psy14299         84 EQTIQTSLAEKKIPLFVNATAGTTVLGAFDPLDEIATVCEKYDLWMHVDACWGGSLI-FSEKYSFVLKGI-NRANSVSWN  161 (448)
Q Consensus        84 e~~l~~~~~~~~~~~lVv~~~~~t~tG~~~~l~~I~~ia~~~g~~l~VD~A~~~~~~-~~~~~~~~~~~~-~~aD~~~~s  161 (448)
                      ++.++..  ...++++|+++++++++|.+.|+++|.++|++||++++||++|+.|.+ +....-....++ ...|++..+
T Consensus       167 ~~~l~~~--~~~~~~~v~~~~v~~~~G~~~~l~~i~~l~~~~~~~livDea~~~g~~g~~G~g~~~~~~~~~~~~i~~~t  244 (406)
T PRK13393        167 ERKLSDL--DPHRPKLVAFESVYSMDGDIAPIAEICDVAEKHGAMTYLDEVHAVGLYGPRGGGIAEREGLADRLTIIEGT  244 (406)
T ss_pred             HHHHHhc--cCCCCEEEEEcCCCCCCCchhCHHHHHHHHHHcCCEEEEECCccccccCCCCCchhhhcCCCCCCeEEEEe
Confidence            9888642  112578899999999999999999999999999999999999986653 111000001111 235788889


Q ss_pred             CccccCCCCceEEEEEeccchhhhhccCCcccccccCcccccccCCCCCcccCCCCchhHHHHHHHHHhChHHHHHHHHH
Q psy14299        162 PHKMLGAPLQCSILLIKEKGLLHQANATAATYLFQQDKFYDVSFDTGDKSVQCGRKVDAFKLWLMWKARGNLGFRHFVDN  241 (448)
Q Consensus       162 ~hK~l~~P~g~G~l~vr~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~g~~~~i~~  241 (448)
                      +.|.++.+.  |++.. ++...........+|.++..                 ..                        
T Consensus       245 lsKa~g~~G--G~~~~-~~~~~~~l~~~~~~~~~t~~-----------------~~------------------------  280 (406)
T PRK13393        245 LAKAFGVMG--GYITG-SAALCDFIRSFASGFIFTTS-----------------LP------------------------  280 (406)
T ss_pred             CchhhcccC--ceeeC-CHHHHHHHHHhCcCceecCc-----------------cC------------------------
Confidence            999998754  44433 43333332221222221100                 00                        


Q ss_pred             hhhhccCCCccchhhhhhhhhhhhhhhhhhhhhhhccccccccccCCCCCccccccchhhHHHHHHHHHhcCccHHHHHH
Q psy14299        242 AVDCSRGSMTFSTLLCFDLQGLLHQANATAATYLFQQDKFYDVSFDTGDKSVQCGRKVDAFKLWLMWKARGNLGFRHFVD  321 (448)
Q Consensus       242 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~  321 (448)
                                                                              .+.+.++..+++.....+.  ..+
T Consensus       281 --------------------------------------------------------p~~~aa~~aaL~~~~~~~~--~~~  302 (406)
T PRK13393        281 --------------------------------------------------------PAVAAGALASVRHLKASSA--ERE  302 (406)
T ss_pred             --------------------------------------------------------HHHHHHHHHHHHHHhhCHH--HHH
Confidence                                                                    0011122233333333332  234


Q ss_pred             HHHHHHHHHHHHhhcCCCeEEeccCCceeeEEEEeeccCCCccccchhhhhhhhhhhHHHHHHHHhC-CcEEEEeee---
Q psy14299        322 NAVDCSRYFLSQISQRPGFRLVIPEFQCTNICFWFIPVSLRDKVEDETWWSTLSKVAPRIKEKLVLG-GTLMIGYQP---  397 (448)
Q Consensus       322 ~~~~l~~~~~~~L~~~pg~~l~~~~~~~~~v~f~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~L~~~-g~~~~~~~~---  397 (448)
                      +..++++++++.|+++ |++++  ++..+++.+.+.. .               ....++.+.|.++ | +++.+..   
T Consensus       303 ~~~~~~~~l~~~L~~~-g~~~~--~~~~~i~~v~~~~-~---------------~~~~~l~~~L~~~~G-i~v~~~~~p~  362 (406)
T PRK13393        303 RHQDRVARLRARLDKA-GIPHL--PNPSHIVPVMVGD-P---------------VLCKQISDELLDRYG-IYVQPINYPT  362 (406)
T ss_pred             HHHHHHHHHHHHHHHc-CCCcC--CCCCCeEEEEeCC-H---------------HHHHHHHHHHHHhCC-EEEEeECCCC
Confidence            5677889999999986 87764  3455555553211 0               0124788888874 8 5555432   


Q ss_pred             -cCCcccccEEEEEecCCCCCCHHHHHHHHHHHHHHHHHhH
Q psy14299        398 -LQHRNLHNFFRLVTTCHPASSRQDMDYAIDQIELRGAEVD  437 (448)
Q Consensus       398 -~~g~~~~~~lRis~~~~~~~t~edid~l~~al~~~~~~~~  437 (448)
                       ..|.   .++|+++  +.++|++|+|+++++|+++.+++.
T Consensus       363 ~p~g~---~~iRis~--~~~~t~edid~l~~~l~~~~~~~~  398 (406)
T PRK13393        363 VPRGT---ERLRITP--SPLHTDADIEHLVQALSEIWARLG  398 (406)
T ss_pred             CCCCC---ceEEEEE--CCCCCHHHHHHHHHHHHHHHHhcC
Confidence             2233   6899999  899999999999999999987654

>PRK06939 2-amino-3-ketobutyrate coenzyme A ligase; Provisional

Probab=99.84  E-value=2.4e-18  Score=175.68  Aligned_cols=287  Identities=16%  Similarity=0.148  Sum_probs=184.7

Q ss_pred             EEEeCcHHHHHHHHHHHHHHhcCCcccccCCCCCCCeEEEecCCCchHHHHHHHHhCCCCCcEEEEecCCCCCcCHHHHH
Q psy14299          5 PFLLPGGSISNMYSICLARYRLDPDTKRKGLSHLPPLCMFTSEDSHYSMLKAAHWLGIGMDNVIRVKTNERGQMICSFLE   84 (448)
Q Consensus         5 g~~t~ggT~an~~al~~a~~~~~~~~~~~G~~~~~~~~Vl~~~~~H~s~~~~~~~~g~~~~~v~~v~~~~~g~id~e~Le   84 (448)
                      .+++++|++++..++.+...              +++.|++++..|+++...++..+.   ++..++.     .|+++++
T Consensus       105 ~i~~tsG~~a~~~~~~~l~~--------------~gd~vi~~~~~~~~~~~~~~~~~~---~~~~~~~-----~d~~~l~  162 (397)
T PRK06939        105 AILYSSCFDANGGLFETLLG--------------KEDAIISDALNHASIIDGVRLCKA---KRYRYAN-----NDMADLE  162 (397)
T ss_pred             EEEEcChHHHHHHHHHHhCC--------------CCCEEEEEhhhhHHHHHHHHhcCC---ceEEeCC-----CCHHHHH
Confidence            45666668888777655432              677899999999999999998887   5666654     4899999


Q ss_pred             HHHHHhhhcCCCcEEEEEeccCCccccccCHHHHHHHHHHcCCEEEEecccccccccccc-hhhhhcCC-CCccEEEECC
Q psy14299         85 QTIQTSLAEKKIPLFVNATAGTTVLGAFDPLDEIATVCEKYDLWMHVDACWGGSLIFSEK-YSFVLKGI-NRANSVSWNP  162 (448)
Q Consensus        85 ~~l~~~~~~~~~~~lVv~~~~~t~tG~~~~l~~I~~ia~~~g~~l~VD~A~~~~~~~~~~-~~~~~~~~-~~aD~~~~s~  162 (448)
                      +.+++....+.++++|+..+..+++|...|+++|.++|++||+++++|++|+.+....+. ......++ ..+|+++.|+
T Consensus       163 ~~i~~~~~~~~~~~~v~~~~v~~~~G~~~~~~~l~~la~~~~~~li~De~~~~g~~~~~~~~~~~~~~~~~~~~i~~~S~  242 (397)
T PRK06939        163 AQLKEAKEAGARHKLIATDGVFSMDGDIAPLPEICDLADKYDALVMVDDSHAVGFVGENGRGTVEHFGVMDRVDIITGTL  242 (397)
T ss_pred             HHHHhhhccCCCCeEEEEecCcCCCCCcCCHHHHHHHHHHhCCEEEEECcccccCcCCCCCCHHHHcCCCCCCcEEEEEC
Confidence            998753333336788888888899999999999999999999999999999755432111 01111122 2468999999


Q ss_pred             ccccCCCCceEEEEEeccchhhhhccCCcccccccCcccccccCCCCCcccCCCCchhHHHHHHHHHhChHHHHHHHHHh
Q psy14299        163 HKMLGAPLQCSILLIKEKGLLHQANATAATYLFQQDKFYDVSFDTGDKSVQCGRKVDAFKLWLMWKARGNLGFRHFVDNA  242 (448)
Q Consensus       163 hK~l~~P~g~G~l~vr~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~g~~~~i~~~  242 (448)
                      ||+++++. .|+++.++ .+..........+....                 + ....                      
T Consensus       243 sK~~~g~r-~G~v~~~~-~~~~~l~~~~~~~~~~~-----------------~-~~~~----------------------  280 (397)
T PRK06939        243 GKALGGAS-GGYTAGRK-EVIDWLRQRSRPYLFSN-----------------S-LAPA----------------------  280 (397)
T ss_pred             HHHhCccC-ceEEEeCH-HHHHHHHHhCccccccC-----------------C-CCHH----------------------
Confidence            99997664 57776644 34433321111111100                 0 0000                      


Q ss_pred             hhhccCCCccchhhhhhhhhhhhhhhhhhhhhhhccccccccccCCCCCccccccchhhHHHHHHHHHhcCccHHHHHHH
Q psy14299        243 VDCSRGSMTFSTLLCFDLQGLLHQANATAATYLFQQDKFYDVSFDTGDKSVQCGRKVDAFKLWLMWKARGNLGFRHFVDN  322 (448)
Q Consensus       243 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~  322 (448)
                                                                               .+.++..+++....  .+++.++
T Consensus       281 ---------------------------------------------------------~~~a~~~al~~~~~--~~~~~~~  301 (397)
T PRK06939        281 ---------------------------------------------------------IVAASIKVLELLEE--SDELRDR  301 (397)
T ss_pred             ---------------------------------------------------------HHHHHHHHHHHHhc--CHHHHHH
Confidence                                                                     00111112222211  2456778


Q ss_pred             HHHHHHHHHHHhhcCCCeEEeccCCceeeEEEEeeccCCCccccchhhhhhhhhhhHHHHHHHHhCCcEEEEeeecCC-c
Q psy14299        323 AVDCSRYFLSQISQRPGFRLVIPEFQCTNICFWFIPVSLRDKVEDETWWSTLSKVAPRIKEKLVLGGTLMIGYQPLQH-R  401 (448)
Q Consensus       323 ~~~l~~~~~~~L~~~pg~~l~~~~~~~~~v~f~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~L~~~g~~~~~~~~~~g-~  401 (448)
                      ..++++++.+.|+++ ++++.  ++..+.+.+.+ +...               ...++.+.|.++|+.+. +..+.. .
T Consensus       302 ~~~~~~~l~~~L~~~-~~~~~--~~~~~~~~~~~-~~~~---------------~~~~~~~~L~~~gI~v~-~~~~~~~~  361 (397)
T PRK06939        302 LWENARYFREGMTAA-GFTLG--PGEHPIIPVML-GDAK---------------LAQEFADRLLEEGVYVI-GFSFPVVP  361 (397)
T ss_pred             HHHHHHHHHHHHHHc-CCCcC--CCCCCEEEEEE-CCHH---------------HHHHHHHHHHHCCceEe-eeCCCCCC
Confidence            888999999999987 77764  33344443322 1111               12478899999985444 332211 1


Q ss_pred             ccccEEEEEecCCCCCCHHHHHHHHHHHHHHHHHh
Q psy14299        402 NLHNFFRLVTTCHPASSRQDMDYAIDQIELRGAEV  436 (448)
Q Consensus       402 ~~~~~lRis~~~~~~~t~edid~l~~al~~~~~~~  436 (448)
                      ...+++|+++  +.+++++|++++++.|+++.++.
T Consensus       362 ~~~~~iRi~~--~~~~~~~~i~~~l~~L~~~~~~~  394 (397)
T PRK06939        362 KGQARIRTQM--SAAHTKEQLDRAIDAFEKVGKEL  394 (397)
T ss_pred             CCCceEEEEE--CCCCCHHHHHHHHHHHHHHHHHh
Confidence            1236899999  67899999999999999987654

>PRK05958 8-amino-7-oxononanoate synthase; Reviewed

Probab=99.83  E-value=2.6e-18  Score=174.61  Aligned_cols=280  Identities=15%  Similarity=0.148  Sum_probs=179.9

Q ss_pred             cEEEeCcHHHHHHHHHHHHHHhcCCcccccCCCCCCCeEEEecCCCchHHHHHHHHhCCCCCcEEEEecCCCCCcCHHHH
Q psy14299          4 KPFLLPGGSISNMYSICLARYRLDPDTKRKGLSHLPPLCMFTSEDSHYSMLKAAHWLGIGMDNVIRVKTNERGQMICSFL   83 (448)
Q Consensus         4 ~g~~t~ggT~an~~al~~a~~~~~~~~~~~G~~~~~~~~Vl~~~~~H~s~~~~~~~~g~~~~~v~~v~~~~~g~id~e~L   83 (448)
                      ..+++++|+++++.++....+              +++.|++++..|.++..++.+.|.   +++.++..     |++++
T Consensus       101 ~~i~~~~g~~~~~~~l~~~~~--------------~gd~V~~~~~~~~~~~~~~~~~g~---~~~~~~~~-----d~~~l  158 (385)
T PRK05958        101 RALLFSSGYAANLAVLTALAG--------------KGDLIVSDKLNHASLIDGARLSRA---RVRRYPHN-----DVDAL  158 (385)
T ss_pred             cEEEECcHHHHHHHHHHHhCC--------------CCCEEEEeCccCHHHHHHHHhcCC---ceEEeCCC-----CHHHH
Confidence            467888899988776644322              667899999999999999988887   67777653     89999


Q ss_pred             HHHHHHhhhcCCCcEEEEEeccCCccccccCHHHHHHHHHHcCCEEEEeccccccccccc-chhhhhcCC--CCccEEEE
Q psy14299         84 EQTIQTSLAEKKIPLFVNATAGTTVLGAFDPLDEIATVCEKYDLWMHVDACWGGSLIFSE-KYSFVLKGI--NRANSVSW  160 (448)
Q Consensus        84 e~~l~~~~~~~~~~~lVv~~~~~t~tG~~~~l~~I~~ia~~~g~~l~VD~A~~~~~~~~~-~~~~~~~~~--~~aD~~~~  160 (448)
                      ++.+++.   ...+.++++.++.+++|...|+++|.++|++||+++++|++|+.+.+... .......++  ..-++++.
T Consensus       159 ~~~i~~~---~~~~~lvi~~~~~~~~G~~~~l~~i~~ia~~~~~~li~De~~~~g~~~~~g~~~~~~~~~~~~~~~i~~~  235 (385)
T PRK05958        159 EALLAKW---RAGRALIVTESVFSMDGDLAPLAELVALARRHGAWLLVDEAHGTGVLGPQGRGLAAEAGLAGEPDVILVG  235 (385)
T ss_pred             HHHHHhc---cCCCeEEEEEecccCCCCcCCHHHHHHHHHHhCCEEEEECcccccccCCCCCchHHhhCCCCCCceEEEE
Confidence            9988652   11356777778889999999999999999999999999999976654211 100000111  12347788


Q ss_pred             CCccccCCCCceEEEEEeccchhhhhccCCcccccccCcccccccCCCCCcccCCCCchhHHHHHHHHHhChHHHHHHHH
Q psy14299        161 NPHKMLGAPLQCSILLIKEKGLLHQANATAATYLFQQDKFYDVSFDTGDKSVQCGRKVDAFKLWLMWKARGNLGFRHFVD  240 (448)
Q Consensus       161 s~hK~l~~P~g~G~l~vr~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~g~~~~i~  240 (448)
                      ++||+++.+ | |+++. ++++..........+.....                 ..  .                    
T Consensus       236 s~sK~~~~~-G-g~~~~-~~~~~~~~~~~~~~~~~~~~-----------------~~--~--------------------  273 (385)
T PRK05958        236 TLGKALGSS-G-AAVLG-SETLIDYLINRARPFIFTTA-----------------LP--P--------------------  273 (385)
T ss_pred             echhhcccC-C-cEEEc-CHHHHHHHHHhCccceecCC-----------------CC--H--------------------
Confidence            999999753 4 55544 43333222111111111000                 00  0                    


Q ss_pred             HhhhhccCCCccchhhhhhhhhhhhhhhhhhhhhhhccccccccccCCCCCccccccchhhHHHHHHHHHhcCccHHHHH
Q psy14299        241 NAVDCSRGSMTFSTLLCFDLQGLLHQANATAATYLFQQDKFYDVSFDTGDKSVQCGRKVDAFKLWLMWKARGNLGFRHFV  320 (448)
Q Consensus       241 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~  320 (448)
                                                                                ..+.++..+++.....  +++.
T Consensus       274 ----------------------------------------------------------~~~aa~~aal~~~~~~--~~~~  293 (385)
T PRK05958        274 ----------------------------------------------------------AQAAAARAALRILRRE--PERR  293 (385)
T ss_pred             ----------------------------------------------------------HHHHHHHHHHHHHhcC--HHHH
Confidence                                                                      0011122233333222  5567


Q ss_pred             HHHHHHHHHHHHHhhcCCCeEEeccCCceeeEEEEeeccCCCccccchhhhhhhhhhhHHHHHHHHhCCcEEEEee-ecC
Q psy14299        321 DNAVDCSRYFLSQISQRPGFRLVIPEFQCTNICFWFIPVSLRDKVEDETWWSTLSKVAPRIKEKLVLGGTLMIGYQ-PLQ  399 (448)
Q Consensus       321 ~~~~~l~~~~~~~L~~~pg~~l~~~~~~~~~v~f~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~L~~~g~~~~~~~-~~~  399 (448)
                      ++..++++++.+.|+++ +++++  ++..+++.|.+ +...               ...++.+.|.++|+. +.+. ...
T Consensus       294 ~~~~~~~~~l~~~L~~~-~~~~~--~~~~~~~~~~~-~~~~---------------~~~~~~~~l~~~gI~-v~~~~~~~  353 (385)
T PRK05958        294 ERLAALIARLRAGLRAL-GFQLM--DSQSAIQPLIV-GDNE---------------RALALAAALQEQGFW-VGAIRPPT  353 (385)
T ss_pred             HHHHHHHHHHHHHHHHc-CCCcC--CCCCCEEEEEe-CCHH---------------HHHHHHHHHHHCCce-EecccCCC
Confidence            88888999999999987 77764  45556666643 1110               124788999999844 4432 111


Q ss_pred             CcccccEEEEEecCCCCCCHHHHHHHHHHHHHH
Q psy14299        400 HRNLHNFFRLVTTCHPASSRQDMDYAIDQIELR  432 (448)
Q Consensus       400 g~~~~~~lRis~~~~~~~t~edid~l~~al~~~  432 (448)
                      ....++++|+++  +.+++++|++++++.|+++
T Consensus       354 ~~~~~~~lRis~--~~~~~~~~i~~~l~~l~~~  384 (385)
T PRK05958        354 VPAGTSRLRITL--TAAHTEADIDRLLEALAEA  384 (385)
T ss_pred             CCCCCceEEEEe--cCCCCHHHHHHHHHHHHhc
Confidence            111126899999  7899999999999999865

>COG1103 Archaea-specific pyridoxal phosphate-dependent enzymes [General function prediction only]

Probab=99.83  E-value=1.9e-18  Score=160.19  Aligned_cols=299  Identities=14%  Similarity=0.142  Sum_probs=206.2

Q ss_pred             EEEeCcHHHHHHHHHHHHHHhcCCcccccCCCCCCCeEEEecCCCchHHHHHHHHhCCCCCcEEEEecC--CCCCcCHHH
Q psy14299          5 PFLLPGGSISNMYSICLARYRLDPDTKRKGLSHLPPLCMFTSEDSHYSMLKAAHWLGIGMDNVIRVKTN--ERGQMICSF   82 (448)
Q Consensus         5 g~~t~ggT~an~~al~~a~~~~~~~~~~~G~~~~~~~~Vl~~~~~H~s~~~~~~~~g~~~~~v~~v~~~--~~g~id~e~   82 (448)
                      +-+|+|+-++-+.+|.+.+.              +++.|+++.++||+..-++...|+   ++..||..  +...++++.
T Consensus        79 ~R~t~GARe~KfavMhal~~--------------~gd~vV~D~~aHYttyvAAEragl---~v~eVp~tg~Pey~i~~e~  141 (382)
T COG1103          79 VRVTAGAREAKFAVMHALCK--------------EGDWVVVDSLAHYTTYVAAERAGL---NVAEVPNTGYPEYKITPEG  141 (382)
T ss_pred             eeecccchhhHHHHHHHhcc--------------CCCEEEEcCcchHHHHHHHHhcCC---eEEecCCCCCCceEecHHH
Confidence            45789999999999888776              567889999999999999999999   89999954  356899999


Q ss_pred             HHHHHHHhhhcC-CCcEEEEEeccCCccccccCHHHHHHHHHHcCCEEEEecccccccccccchhhhhcCCCCccEEEEC
Q psy14299         83 LEQTIQTSLAEK-KIPLFVNATAGTTVLGAFDPLDEIATVCEKYDLWMHVDACWGGSLIFSEKYSFVLKGINRANSVSWN  161 (448)
Q Consensus        83 Le~~l~~~~~~~-~~~~lVv~~~~~t~tG~~~~l~~I~~ia~~~g~~l~VD~A~~~~~~~~~~~~~~~~~~~~aD~~~~s  161 (448)
                      ..+.|++-.+++ ..|.+.+++|+....|.+.|.+.++++||++|+++++.+|+..|-++.....     + .+|+++.|
T Consensus       142 y~~viee~~~~~g~~~~lallTh~Dg~YGNl~Dakkva~ic~e~gvPlllN~AYt~Grmpvs~ke-----~-g~DFiVgS  215 (382)
T COG1103         142 YAEVIEEVKDEGGDPPALALLTHVDGEYGNLADAKKVAKICREYGVPLLLNCAYTVGRMPVSGKE-----I-GADFIVGS  215 (382)
T ss_pred             HHHHHHHHHhccCCCceEEEEeccCCCcCCchhhHHHHHHHHHcCCceEeecceeeccccccccc-----c-CCCEEEec
Confidence            999999876664 6688999999999999999999999999999999999999999998765422     2 58999999


Q ss_pred             CccccCCCCceEEEEEeccchhhhhccCCcccccccCcccccccCCCCCcccCCCCchhHHHHHHHHHhChHHHHHHHHH
Q psy14299        162 PHKMLGAPLQCSILLIKEKGLLHQANATAATYLFQQDKFYDVSFDTGDKSVQCGRKVDAFKLWLMWKARGNLGFRHFVDN  241 (448)
Q Consensus       162 ~hK~l~~P~g~G~l~vr~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~g~~~~i~~  241 (448)
                      +||.+.+-..+|+|.++. ++....+..+..+......          .-+-++.+..++...  +  ..-.-..++++ 
T Consensus       216 GHKsmAAs~PiGvl~~~e-E~ae~V~r~Sg~~~~~KEv----------ellGCT~rGapivTl--m--ASfP~V~eRVk-  279 (382)
T COG1103         216 GHKSMAASAPIGVLAMSE-EWAEIVLRRSGRAFPKKEV----------ELLGCTVRGAPIVTL--M--ASFPHVVERVK-  279 (382)
T ss_pred             CccchhccCCeeEEeehh-HHHHHHHhhccccccccee----------eeecccccCchHHHH--H--hcCHHHHHHHH-
Confidence            999999999999999866 4544444333222211110          011233332222111  1  11111222221 


Q ss_pred             hhhhccCCCccchhhhhhhhhhhhhhhhhhhhhhhccccccccccCCCCCccccccchhhHHHHHHHHHhcCccHHHHHH
Q psy14299        242 AVDCSRGSMTFSTLLCFDLQGLLHQANATAATYLFQQDKFYDVSFDTGDKSVQCGRKVDAFKLWLMWKARGNLGFRHFVD  321 (448)
Q Consensus       242 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~  321 (448)
                                                                                                   .++
T Consensus       280 -----------------------------------------------------------------------------rWd  282 (382)
T COG1103         280 -----------------------------------------------------------------------------RWD  282 (382)
T ss_pred             -----------------------------------------------------------------------------HHH
Confidence                                                                                         234


Q ss_pred             HHHHHHHHHHHHhhcCCCeEEeccCCce-eeEEEEeeccCCCccccchhhhhhhhhhhHHHHHHHHhCCcEEEEeeecCC
Q psy14299        322 NAVDCSRYFLSQISQRPGFRLVIPEFQC-TNICFWFIPVSLRDKVEDETWWSTLSKVAPRIKEKLVLGGTLMIGYQPLQH  400 (448)
Q Consensus       322 ~~~~l~~~~~~~L~~~pg~~l~~~~~~~-~~v~f~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~L~~~g~~~~~~~~~~g  400 (448)
                      ...+.+++|.+.|.++-|+..++..|.. -.+-|.. | .+.      ++.+...+-.--+++.|.++|+.-+.++.   
T Consensus       283 eEv~kaR~fv~elEkigg~~qlG~rPk~HdLm~Fet-p-~f~------eIakk~~r~gyFlY~ELK~RgI~GI~~G~---  351 (382)
T COG1103         283 EEVEKARWFVAELEKIGGVKQLGERPKNHDLMKFET-P-VFH------EIAKKHKRKGYFLYEELKKRGIHGIQPGQ---  351 (382)
T ss_pred             HHHHHHHHHHHHHHHhhhHHHhCCCCcccceeeecC-c-hHH------HHHHhCcCCceeeHHHHHhcCccccccCc---
Confidence            5677899999999999778887433433 3333421 1 111      00000000001255666666643333321   


Q ss_pred             cccccEEEEEecCCCCCCHHHHHHHHHHHHHHHHHh
Q psy14299        401 RNLHNFFRLVTTCHPASSRQDMDYAIDQIELRGAEV  436 (448)
Q Consensus       401 ~~~~~~lRis~~~~~~~t~edid~l~~al~~~~~~~  436 (448)
                         ..++.+|+   +..+.|++++.++++++++++.
T Consensus       352 ---Tk~~K~sv---yGl~~Eqve~V~~afkeI~eky  381 (382)
T COG1103         352 ---TKYFKLSV---YGLSWEQVEYVVDAFKEIAEKY  381 (382)
T ss_pred             ---eeEEEEEe---ecCCHHHHHHHHHHHHHHHHhc
Confidence               25789998   5789999999999999998764

>cd00378 SHMT Serine-glycine hydroxymethyltransferase (SHMT)

Probab=99.83  E-value=5.5e-19  Score=181.16  Aligned_cols=285  Identities=16%  Similarity=0.136  Sum_probs=174.8

Q ss_pred             EEeCcHHHHHHHHHHHHHHhcCCcccccCCCCCCCeEEEecCCCchHHHHH-----HHHhCCCCCcEEEEecCC---CCC
Q psy14299          6 FLLPGGSISNMYSICLARYRLDPDTKRKGLSHLPPLCMFTSEDSHYSMLKA-----AHWLGIGMDNVIRVKTNE---RGQ   77 (448)
Q Consensus         6 ~~t~ggT~an~~al~~a~~~~~~~~~~~G~~~~~~~~Vl~~~~~H~s~~~~-----~~~~g~~~~~v~~v~~~~---~g~   77 (448)
                      ++++|||+++..++.+..+              +++.|+++..+|.+....     ++..|.   ++..++.+.   ++.
T Consensus        85 v~~~sgt~a~~~~l~~l~~--------------~Gd~Vl~~~~~~~~~~~~~~~~~~~~~g~---~~~~~~~~~~~~~~~  147 (402)
T cd00378          85 VQPHSGSQANLAVYFALLE--------------PGDTIMGLDLSHGGHLTHGSFTKVSASGK---LFESVPYGVDPETGL  147 (402)
T ss_pred             eecCCcHHHHHHHHHHhcC--------------CCCEEEEecCccCccccccccccccccce---eEEEecCCcCcccCC
Confidence            4555789998888776543              567788888888655333     444454   455555533   589


Q ss_pred             cCHHHHHHHHHHhhhcCCCcEEEEEeccCCccccccCHHHHHHHHHHcCCEEEEecccccccccccchhhhhcCCCCccE
Q psy14299         78 MICSFLEQTIQTSLAEKKIPLFVNATAGTTVLGAFDPLDEIATVCEKYDLWMHVDACWGGSLIFSEKYSFVLKGINRANS  157 (448)
Q Consensus        78 id~e~Le~~l~~~~~~~~~~~lVv~~~~~t~tG~~~~l~~I~~ia~~~g~~l~VD~A~~~~~~~~~~~~~~~~~~~~aD~  157 (448)
                      +|++++++.+.+     .++++|+++++.  +|...|+++|+++|++||+++++|++|..+..........+.   .+|+
T Consensus       148 id~~~l~~~i~~-----~~~~~v~~~~~~--~~~~~~~~~I~~l~~~~~~~li~D~a~~~g~~~~g~~~~~~~---~~dv  217 (402)
T cd00378         148 IDYDALEKMALE-----FKPKLIVAGASA--YPRPIDFKRFREIADEVGAYLLVDMAHVAGLVAGGVFPNPLP---GADV  217 (402)
T ss_pred             cCHHHHHHHHHh-----CCCCEEEecCcc--cCCCcCHHHHHHHHHhcCCEEEEEccchhhhhhcccCCCccc---CCcE
Confidence            999999999964     247788776664  467889999999999999999999998766543221111111   4699


Q ss_pred             EEECCccccCCCCceEEEEEeccchhhhhccCCcccccccCcccccccCCCCCcccCCCCchhHHHHHHHHHhChHHHHH
Q psy14299        158 VSWNPHKMLGAPLQCSILLIKEKGLLHQANATAATYLFQQDKFYDVSFDTGDKSVQCGRKVDAFKLWLMWKARGNLGFRH  237 (448)
Q Consensus       158 ~~~s~hK~l~~P~g~G~l~vr~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~g~~~  237 (448)
                      ++.++||++.+|.|.+++ ..++...........++...                  +...   .               
T Consensus       218 ~~~s~sK~l~G~~gg~i~-~~~~~~~~~l~~~~~~~~~~------------------~~~~---~---------------  260 (402)
T cd00378         218 VTTTTHKTLRGPRGGLIL-TRKGELAKKINSAVFPGLQG------------------GPHL---H---------------  260 (402)
T ss_pred             EEeccccCCCCCCceEEE-eccHHHHHHHHHHhCccccC------------------CchH---H---------------
Confidence            999999999888765544 44423333322111111100                  0000   0               


Q ss_pred             HHHHhhhhccCCCccchhhhhhhhhhhhhhhhhhhhhhhccccccccccCCCCCccccccchhhHHHHHHHHHhcCccHH
Q psy14299        238 FVDNAVDCSRGSMTFSTLLCFDLQGLLHQANATAATYLFQQDKFYDVSFDTGDKSVQCGRKVDAFKLWLMWKARGNLGFR  317 (448)
Q Consensus       238 ~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~  317 (448)
                                                                                    .+.++..++......+++
T Consensus       261 --------------------------------------------------------------~~~a~~~al~~~~~~~~~  278 (402)
T cd00378         261 --------------------------------------------------------------VIAAKAVALKEALEPEFK  278 (402)
T ss_pred             --------------------------------------------------------------HHHHHHHHHHHHhhHHHH
Confidence                                                                          001111122222222456


Q ss_pred             HHHHHHHHHHHHHHHHhhcCCCeEEeccCC-ceeeEEEEeeccCCCccccchhhhhhhhhhhHHHHHHHHhCCcEEEEee
Q psy14299        318 HFVDNAVDCSRYFLSQISQRPGFRLVIPEF-QCTNICFWFIPVSLRDKVEDETWWSTLSKVAPRIKEKLVLGGTLMIGYQ  396 (448)
Q Consensus       318 ~~~~~~~~l~~~~~~~L~~~pg~~l~~~~~-~~~~v~f~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~L~~~g~~~~~~~  396 (448)
                      ++.++..++++++.+.|+++ |++++ ..+ ..+.+.+.+.+.+..               ...+.+.|.++| +.+.+.
T Consensus       279 ~~~~~~~~~~~~l~~~L~~~-g~~~~-~~~~~~~~v~v~~~~~~~~---------------~~~~~~~l~~~g-I~v~~~  340 (402)
T cd00378         279 AYAKQVVENAKALAEALKER-GFKVV-SGGTDNHLVLVDLRPKGIT---------------GKAAEDALEEAG-ITVNKN  340 (402)
T ss_pred             HHHHHHHHHHHHHHHHHHhC-CCeEe-ecCCCCeEEEEeCCccCCC---------------HHHHHHHHHHcC-cEEcCC
Confidence            67788889999999999998 99886 433 334443433221211               125666677778 444322


Q ss_pred             ----ecCCcccccEEEEEecCCCC----CCHHHHHHHHHHHHHHHHHh
Q psy14299        397 ----PLQHRNLHNFFRLVTTCHPA----SSRQDMDYAIDQIELRGAEV  436 (448)
Q Consensus       397 ----~~~g~~~~~~lRis~~~~~~----~t~edid~l~~al~~~~~~~  436 (448)
                          ...+...+.++|+++  +..    .+++|++++++.|+++.++-
T Consensus       341 ~~p~~~~~~~~~~~lRi~~--~~~~~~~~~~~di~~~~~~l~~~~~~~  386 (402)
T cd00378         341 TLPWDPSSPFVPSGIRIGT--PAMTTRGMGEEEMEEIADFIARALKDA  386 (402)
T ss_pred             cCCCCCCCCCCCCeeEecC--HHHHHhCCCHHHHHHHHHHHHHHHhcc
Confidence                111111236899999  444    37999999999999977543

This family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). SHMT carries out interconversion of serine and glycine; it catalyzes the transfer of hydroxymethyl group of N5, N10-methylene tetrahydrofolate to glycine resulting in the formation of serine and tetrahydrofolate. Both eukaryotic and prokaryotic SHMT enzymes form tight obligate homodimers; the mammalian enzyme forms a homotetramer comprising four pyridoxal phosphate-bound active sites.

>PLN02483 serine palmitoyltransferase

Probab=99.83  E-value=3.8e-18  Score=178.94  Aligned_cols=290  Identities=16%  Similarity=0.141  Sum_probs=185.4

Q ss_pred             EEEeCcHHHHHHHHHHHHHHhcCCcccccCCCCCCCeEEEecCCCchHHHHHHHHhCCCCCcEEEEecCCCCCcCHHHHH
Q psy14299          5 PFLLPGGSISNMYSICLARYRLDPDTKRKGLSHLPPLCMFTSEDSHYSMLKAAHWLGIGMDNVIRVKTNERGQMICSFLE   84 (448)
Q Consensus         5 g~~t~ggT~an~~al~~a~~~~~~~~~~~G~~~~~~~~Vl~~~~~H~s~~~~~~~~g~~~~~v~~v~~~~~g~id~e~Le   84 (448)
                      .++.++|+.+|+.++.+...              +++.|++++.+|.|+..+++..|+   +++.++++     |+++++
T Consensus       164 ai~~~~G~~an~~~i~al~~--------------~Gd~Vi~d~~~h~s~~~~~~~~Ga---~v~~~~~~-----d~~~le  221 (489)
T PLN02483        164 AIVFGMGYATNSTIIPALIG--------------KGGLIISDSLNHNSIVNGARGSGA---TIRVFQHN-----TPSHLE  221 (489)
T ss_pred             EEEECCHHHHHHHHHHHhCC--------------CCCEEEEcchhhHHHHHHHHHcCC---eEEEEeCC-----CHHHHH
Confidence            46667788888866655433              677899999999999999999998   78888876     788888


Q ss_pred             HHHHHhhhcC------CCcE-EEEEeccCCccccccCHHHHHHHHHHcCCEEEEecccccccccccch-hhhhcCC--CC
Q psy14299         85 QTIQTSLAEK------KIPL-FVNATAGTTVLGAFDPLDEIATVCEKYDLWMHVDACWGGSLIFSEKY-SFVLKGI--NR  154 (448)
Q Consensus        85 ~~l~~~~~~~------~~~~-lVv~~~~~t~tG~~~~l~~I~~ia~~~g~~l~VD~A~~~~~~~~~~~-~~~~~~~--~~  154 (448)
                      +.+++....+      +..+ +|++....+++|.+.|+++|.++|++||+++++|+||+.+....... .....++  ..
T Consensus       222 ~~l~~~i~~~~p~t~~p~~k~livve~v~s~~G~~~~l~~I~~la~~~~~~livDEa~s~g~~G~~G~g~~~~~~v~~~~  301 (489)
T PLN02483        222 EVLREQIAEGQPRTHRPWKKIIVIVEGIYSMEGELCKLPEIVAVCKKYKAYVYLDEAHSIGAVGKTGRGVCELLGVDPAD  301 (489)
T ss_pred             HHHHhhhhccccccccCCceEEEEECCCCCCCCcccCHHHHHHHHHHcCCEEEEECcCccCccCCCCCchHHhcCCCccc
Confidence            8886532111      1124 55666677889999999999999999999999999998665421100 0001111  24


Q ss_pred             ccEEEECCccccCCCCceEEEEEeccchhhhhccCCcccccccCcccccccCCCCCcccCCCCchhHHHHHHHHHhChHH
Q psy14299        155 ANSVSWNPHKMLGAPLQCSILLIKEKGLLHQANATAATYLFQQDKFYDVSFDTGDKSVQCGRKVDAFKLWLMWKARGNLG  234 (448)
Q Consensus       155 aD~~~~s~hK~l~~P~g~G~l~vr~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~g  234 (448)
                      +|+++.+++|+++.+ | |+++. +++++.........+.+...                 ..  +.             
T Consensus       302 ~dI~~~SfSKs~g~~-G-G~i~~-~~~li~~l~~~~~~~~~~~~-----------------~~--p~-------------  346 (489)
T PLN02483        302 VDIMMGTFTKSFGSC-G-GYIAG-SKELIQYLKRTCPAHLYATS-----------------MS--PP-------------  346 (489)
T ss_pred             CcEEEEecchhcccC-c-eEEEc-CHHHHHHHHHhCccccccCC-----------------cC--HH-------------
Confidence            789999999999764 3 66554 44444443222221111100                 00  00             


Q ss_pred             HHHHHHHhhhhccCCCccchhhhhhhhhhhhhhhhhhhhhhhccccccccccCCCCCccccccchhhHHHHHHHHHhc-C
Q psy14299        235 FRHFVDNAVDCSRGSMTFSTLLCFDLQGLLHQANATAATYLFQQDKFYDVSFDTGDKSVQCGRKVDAFKLWLMWKARG-N  313 (448)
Q Consensus       235 ~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~  313 (448)
                                                                                       ...++..+++.+. .
T Consensus       347 -----------------------------------------------------------------~~~~~~aaL~~l~~~  361 (489)
T PLN02483        347 -----------------------------------------------------------------AVQQVISAIKVILGE  361 (489)
T ss_pred             -----------------------------------------------------------------HHHHHHHHHHHHHhC
Confidence                                                                             0001111222211 1


Q ss_pred             ---ccHHHHHHHHHHHHHHHHHHhhcCCCeEEeccCCceeeEEEEeeccCCCccccchhhhhhhhhhhHHHHHHHHhCCc
Q psy14299        314 ---LGFRHFVDNAVDCSRYFLSQISQRPGFRLVIPEFQCTNICFWFIPVSLRDKVEDETWWSTLSKVAPRIKEKLVLGGT  390 (448)
Q Consensus       314 ---~G~~~~~~~~~~l~~~~~~~L~~~pg~~l~~~~~~~~~v~f~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~L~~~g~  390 (448)
                         +-.+++.++..++++++++.|+++ |++++ .+...+++.+.+... .               ...++.+.|+++|+
T Consensus       362 ~g~~~~~~~~~~l~~~~~~l~~~L~~~-G~~v~-~~~~sp~~~l~l~~~-~---------------~~~~~~~~Ll~~GI  423 (489)
T PLN02483        362 DGTNRGAQKLAQIRENSNFFRSELQKM-GFEVL-GDNDSPVMPIMLYNP-A---------------KIPAFSRECLKQNV  423 (489)
T ss_pred             ccccchHHHHHHHHHHHHHHHHHHHHC-CCccc-CCCCCCEEEEEECCH-H---------------HHHHHHHHHHHCCc
Confidence               122345677889999999999998 88876 444445554433210 0               11268888899995


Q ss_pred             EEEEeeecCC-cccccEEEEEecCCCCCCHHHHHHHHHHHHHHHHHhH
Q psy14299        391 LMIGYQPLQH-RNLHNFFRLVTTCHPASSRQDMDYAIDQIELRGAEVD  437 (448)
Q Consensus       391 ~~~~~~~~~g-~~~~~~lRis~~~~~~~t~edid~l~~al~~~~~~~~  437 (448)
                      .+. +..+.. ....+.+|+++  +..+|+||+++++++|+++.+.+.
T Consensus       424 ~v~-~~~fp~~p~~~~~vRi~i--sa~~t~edId~~l~~L~~~~~~~~  468 (489)
T PLN02483        424 AVV-VVGFPATPLLLARARICI--SASHSREDLIKALEVISEVGDLVG  468 (489)
T ss_pred             EEe-eeCCCCCCCCCceEEEEe--CCCCCHHHHHHHHHHHHHHHHHhC
Confidence            554 332211 11126899999  678999999999999999987664

>COG0436 Aspartate/tyrosine/aromatic aminotransferase [Amino acid transport and metabolism]

Probab=99.83  E-value=2.5e-18  Score=175.36  Aligned_cols=289  Identities=11%  Similarity=0.069  Sum_probs=206.5

Q ss_pred             cEEEeCcHHHHHHHHHHHHHHhcCCcccccCCCCCCCeEEEecCCCchHHHHHHHHhCCCCCcEEEEecC---CCCCcCH
Q psy14299          4 KPFLLPGGSISNMYSICLARYRLDPDTKRKGLSHLPPLCMFTSEDSHYSMLKAAHWLGIGMDNVIRVKTN---ERGQMIC   80 (448)
Q Consensus         4 ~g~~t~ggT~an~~al~~a~~~~~~~~~~~G~~~~~~~~Vl~~~~~H~s~~~~~~~~g~~~~~v~~v~~~---~~g~id~   80 (448)
                      .++.|+|+++++..++.+..+              |++.|++++..+.++....++.|.   ++..++++   .++.+|+
T Consensus        91 eiivt~Ga~~al~~~~~a~~~--------------pGDeVlip~P~Y~~y~~~~~~~gg---~~v~v~l~~~~~~f~~d~  153 (393)
T COG0436          91 EIIVTAGAKEALFLAFLALLN--------------PGDEVLIPDPGYPSYEAAVKLAGG---KPVPVPLDEEENGFKPDL  153 (393)
T ss_pred             eEEEeCCHHHHHHHHHHHhcC--------------CCCEEEEeCCCCcCHHHHHHhcCC---EEEEEeCCcCccCCcCCH
Confidence            389999999999999888766              677799999999999999999999   78888864   3789999


Q ss_pred             HHHHHHHHHhhhcCCCcEEEEEeccCCccccccC---HHHHHHHHHHcCCEEEEecccccccccccchhhhhcCCCC-cc
Q psy14299         81 SFLEQTIQTSLAEKKIPLFVNATAGTTVLGAFDP---LDEIATVCEKYDLWMHVDACWGGSLIFSEKYSFVLKGINR-AN  156 (448)
Q Consensus        81 e~Le~~l~~~~~~~~~~~lVv~~~~~t~tG~~~~---l~~I~~ia~~~g~~l~VD~A~~~~~~~~~~~~~~~~~~~~-aD  156 (448)
                      ++|++++.+      ++++|+++.++|+||.+.+   +++|+++|++||++++.|.+|....+....... ...+.. .|
T Consensus       154 ~~l~~~i~~------ktk~i~ln~P~NPTGav~~~~~l~~i~~~a~~~~i~ii~DEiY~~l~yd~~~~~s-~~~~~~~~~  226 (393)
T COG0436         154 EDLEAAITP------KTKAIILNSPNNPTGAVYSKEELKAIVELAREHDIIIISDEIYEELVYDGAEHPS-ILELAGARD  226 (393)
T ss_pred             HHHHhhcCc------cceEEEEeCCCCCcCcCCCHHHHHHHHHHHHHcCeEEEEehhhhhcccCCCCcCC-HhhcCCCcc
Confidence            999999976      5899999999999998855   888999999999999999998866553211110 111111 11


Q ss_pred             -EEE-ECCccccCCC-CceEEEEEeccchhhhhccCCcccccccCcccccccCCCCCcccCCCCchhHHHHHHHHHhChH
Q psy14299        157 -SVS-WNPHKMLGAP-LQCSILLIKEKGLLHQANATAATYLFQQDKFYDVSFDTGDKSVQCGRKVDAFKLWLMWKARGNL  233 (448)
Q Consensus       157 -~~~-~s~hK~l~~P-~g~G~l~vr~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~  233 (448)
                       .++ -|..|.++.+ .-+|+++..++.+....                                               
T Consensus       227 ~~i~i~s~SK~~~mtGwRvG~~v~~~~~l~~~~-----------------------------------------------  259 (393)
T COG0436         227 RTITINSFSKTYGMTGWRIGWVVGPPEELIAAL-----------------------------------------------  259 (393)
T ss_pred             eEEEEecccccccccccceeEeecChHHHHHHH-----------------------------------------------
Confidence             333 3667766543 23444444322221111                                               


Q ss_pred             HHHHHHHHhhhhccCCCccchhhhhhhhhhhhhhhhhhhhhhhccccccccccCCCCCccccccchhhHHHHHHHHHhcC
Q psy14299        234 GFRHFVDNAVDCSRGSMTFSTLLCFDLQGLLHQANATAATYLFQQDKFYDVSFDTGDKSVQCGRKVDAFKLWLMWKARGN  313 (448)
Q Consensus       234 g~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  313 (448)
                            +                                              .+......|.+.+.+.+...+|+....
T Consensus       260 ------~----------------------------------------------~~~~~~~~~~~~~~Q~aa~~aL~~~~~  287 (393)
T COG0436         260 ------R----------------------------------------------KLKSYLTSCAPTPAQYAAIAALNGPQS  287 (393)
T ss_pred             ------H----------------------------------------------HHHHhcccCCCHHHHHHHHHHhcCccc
Confidence                  0                                              011123346666667777777776543


Q ss_pred             -ccHHHHHHHHHHHHHHHHHHhhcCCCeEEeccCCceeeEEEEeeccCCCccccchhhhhhhhhhhHHHHHHHHhCCcEE
Q psy14299        314 -LGFRHFVDNAVDCSRYFLSQISQRPGFRLVIPEFQCTNICFWFIPVSLRDKVEDETWWSTLSKVAPRIKEKLVLGGTLM  392 (448)
Q Consensus       314 -~G~~~~~~~~~~l~~~~~~~L~~~pg~~l~~~~~~~~~v~f~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~L~~~g~~~  392 (448)
                       ..++.+.+...+.++.+.+.|.+++|+++. .+|..+.+.|.-.+...+               ..++.+.|+++..+.
T Consensus       288 ~~~~~~~~~~~~~rrd~l~~~l~~~~g~~~~-~~p~Ga~Y~~~~i~~~~d---------------~~~f~~~Ll~~~gV~  351 (393)
T COG0436         288 DEVVEEMREEYRERRDLLVEALNEIGGLSVV-KPPEGAFYLFPKIPELLD---------------SEEFAKKLLEEAGVA  351 (393)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHhcCCeeec-cCCCeeEEEEeecCCCCC---------------HHHHHHHHHHhCCEE
Confidence             566777788999999999999999889987 557788888754443211               237888888886688


Q ss_pred             EEeeecCCcc-cccEEEEEecCCCCCCHHHHHHHHHHHHHHHHH
Q psy14299        393 IGYQPLQHRN-LHNFFRLVTTCHPASSRQDMDYAIDQIELRGAE  435 (448)
Q Consensus       393 ~~~~~~~g~~-~~~~lRis~~~~~~~t~edid~l~~al~~~~~~  435 (448)
                      +.|+...|.. +.+++|+|+.    +++++++..++.+++..+.
T Consensus       352 v~PG~~Fg~~~g~~~vRis~~----~~~~~l~~a~~rl~~~~~~  391 (393)
T COG0436         352 VVPGSGFGEPPGEGYVRLSLA----TSEETLEEALRRLARFLAE  391 (393)
T ss_pred             EecccccCCCCCCCeEEEEEe----cCHHHHHHHHHHHHHHHHh
Confidence            8888777763 5689999995    3557788888777776654

>PLN02822 serine palmitoyltransferase

Probab=99.82  E-value=1.1e-17  Score=174.97  Aligned_cols=295  Identities=14%  Similarity=0.100  Sum_probs=190.0

Q ss_pred             EEEeCcHHHHHHHHHHHHHHhcCCcccccCCCCCCCeEEEecCCCchHHHHHHHHhCCCCCcEEEEecCCCCCcCHHHHH
Q psy14299          5 PFLLPGGSISNMYSICLARYRLDPDTKRKGLSHLPPLCMFTSEDSHYSMLKAAHWLGIGMDNVIRVKTNERGQMICSFLE   84 (448)
Q Consensus         5 g~~t~ggT~an~~al~~a~~~~~~~~~~~G~~~~~~~~Vl~~~~~H~s~~~~~~~~g~~~~~v~~v~~~~~g~id~e~Le   84 (448)
                      .+|++|++ ++..++.+..+              +++.|+++...|+++..++++.+.   +++.++++     |+++++
T Consensus       173 i~~s~G~~-a~~sai~a~~~--------------~gd~Ii~d~~~H~s~~~~~~ls~~---~~~~~~~n-----d~~~l~  229 (481)
T PLN02822        173 ILYSYGLS-TIFSVIPAFCK--------------KGDIIVADEGVHWGIQNGLYLSRS---TIVYFKHN-----DMESLR  229 (481)
T ss_pred             EEECCHHH-HHHHHHHHhCC--------------CCCEEEEeCCccHHHHHHHHHcCC---eEEEECCC-----CHHHHH
Confidence            45555544 66665554432              567888999999999999998887   78888887     778888


Q ss_pred             HHHHHhhhc---CCCc-EEEEEeccCCccccccCHHHHHHHHHHcCCEEEEecccccccccccc-hhhhhcCC--CCccE
Q psy14299         85 QTIQTSLAE---KKIP-LFVNATAGTTVLGAFDPLDEIATVCEKYDLWMHVDACWGGSLIFSEK-YSFVLKGI--NRANS  157 (448)
Q Consensus        85 ~~l~~~~~~---~~~~-~lVv~~~~~t~tG~~~~l~~I~~ia~~~g~~l~VD~A~~~~~~~~~~-~~~~~~~~--~~aD~  157 (448)
                      +.+++..+.   .+++ ++|++....+++|.+.|+++|.++|++||+++++|++|+.+.+--.. .-....++  ...|+
T Consensus       230 ~~l~~~~~~~~~~~~~~~~Ivve~i~~~~G~i~~L~~i~~l~~k~~~~LIvDEa~s~gvlG~~G~G~~e~~~v~~~~~di  309 (481)
T PLN02822        230 NTLEKLTAENKRKKKLRRYIVVEAIYQNSGQIAPLDEIVRLKEKYRFRVLLDESNSFGVLGKSGRGLSEHFGVPIEKIDI  309 (481)
T ss_pred             HHHHHHhhhhcccCCCcEEEEEecCCCCCCCccCHHHHHHHHHHcCCEEEEECCccccccCCCCCChHHHcCCCCCCCeE
Confidence            888653222   1234 68999999999999999999999999999999999999966542110 00001122  24789


Q ss_pred             EEECCccccCCCCceEEEEEeccchhhhhccCCcccccccCcccccccCCCCCcccCCCCchhHHHHHHHHHhChHHHHH
Q psy14299        158 VSWNPHKMLGAPLQCSILLIKEKGLLHQANATAATYLFQQDKFYDVSFDTGDKSVQCGRKVDAFKLWLMWKARGNLGFRH  237 (448)
Q Consensus       158 ~~~s~hK~l~~P~g~G~l~vr~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~g~~~  237 (448)
                      ++.+..|.++.+.  |+++. ++.+..........|.++.+                 .+  +..               
T Consensus       310 i~~s~sKalg~~G--G~i~g-~~~ii~~~~~~~~~~~fsa~-----------------lP--p~~---------------  352 (481)
T PLN02822        310 ITAAMGHALATEG--GFCTG-SARVVDHQRLSSSGYVFSAS-----------------LP--PYL---------------  352 (481)
T ss_pred             EEecchhhhhhCC--eEEEc-CHHHHHHHHhcCCceeeccc-----------------cC--HHH---------------
Confidence            9999999997543  55554 44444443322233332211                 00  000               


Q ss_pred             HHHHhhhhccCCCccchhhhhhhhhhhhhhhhhhhhhhhccccccccccCCCCCccccccchhhHHHHHHHHHhcCccHH
Q psy14299        238 FVDNAVDCSRGSMTFSTLLCFDLQGLLHQANATAATYLFQQDKFYDVSFDTGDKSVQCGRKVDAFKLWLMWKARGNLGFR  317 (448)
Q Consensus       238 ~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~  317 (448)
                                                                                     +.+...+++....  .+
T Consensus       353 ---------------------------------------------------------------~~Aa~~aL~~l~~--~~  367 (481)
T PLN02822        353 ---------------------------------------------------------------ASAAITAIDVLED--NP  367 (481)
T ss_pred             ---------------------------------------------------------------HHHHHHHHHHHHh--CH
Confidence                                                                           0111122222221  24


Q ss_pred             HHHHHHHHHHHHHHHHhhcCCCeEEeccCCceeeEEEEeeccCCCccccchhhhhhhhhhhHHHHHHHH-hCCcEEEEee
Q psy14299        318 HFVDNAVDCSRYFLSQISQRPGFRLVIPEFQCTNICFWFIPVSLRDKVEDETWWSTLSKVAPRIKEKLV-LGGTLMIGYQ  396 (448)
Q Consensus       318 ~~~~~~~~l~~~~~~~L~~~pg~~l~~~~~~~~~v~f~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~L~-~~g~~~~~~~  396 (448)
                      ++.++..++++++++.|++++|+++. .++..+++.+.+... ....       +.-.....++.+.|+ ++| +++.+.
T Consensus       368 ~~~~~l~~~~~~l~~~L~~~~g~~~~-~~~~spi~~l~l~~~-~~~~-------~~~~~~~~~~~~~Ll~e~G-V~v~~~  437 (481)
T PLN02822        368 SVLAKLKENIALLHKGLSDIPGLSIG-SNTLSPIVFLHLEKS-TGSA-------KEDLSLLEHIADRMLKEDS-VLVVVS  437 (481)
T ss_pred             HHHHHHHHHHHHHHHHHHhcCCcccC-CCCCCCEEEEEeCCC-cccc-------cchHHHHHHHHHHHHhcCC-EEEEee
Confidence            57788889999999999998898875 455666666665321 0000       000112347888988 778 555543


Q ss_pred             ec--CCc-ccccEEEEEecCCCCCCHHHHHHHHHHHHHHHHHh
Q psy14299        397 PL--QHR-NLHNFFRLVTTCHPASSRQDMDYAIDQIELRGAEV  436 (448)
Q Consensus       397 ~~--~g~-~~~~~lRis~~~~~~~t~edid~l~~al~~~~~~~  436 (448)
                      .+  .+. ..+..+|+++  +..+|++||++++++|+++.+++
T Consensus       438 ~~~~~~~~~~~~~lRi~i--s~~~t~edI~~~~~~l~~~~~~~  478 (481)
T PLN02822        438 KRSTLDKCRLPVGIRLFV--SAGHTESDILKASESLKRVAASV  478 (481)
T ss_pred             CCCCcCCCCCCCcEEEEE--CCCCCHHHHHHHHHHHHHHHHHH
Confidence            22  111 0125799999  67899999999999999988765

>PLN02955 8-amino-7-oxononanoate synthase

Probab=99.82  E-value=6.1e-18  Score=173.72  Aligned_cols=291  Identities=12%  Similarity=0.078  Sum_probs=190.5

Q ss_pred             cEEEeCcHHHHHHHHHHHHHHhcCCcccccCCC-CCCCeEEEecCCCchHHHHHHHHhCCC-CCcEEEEecCCCCCcCHH
Q psy14299          4 KPFLLPGGSISNMYSICLARYRLDPDTKRKGLS-HLPPLCMFTSEDSHYSMLKAAHWLGIG-MDNVIRVKTNERGQMICS   81 (448)
Q Consensus         4 ~g~~t~ggT~an~~al~~a~~~~~~~~~~~G~~-~~~~~~Vl~~~~~H~s~~~~~~~~g~~-~~~v~~v~~~~~g~id~e   81 (448)
                      ..++.++|..+|+.++.+...-. +-..+.+.+ ..+++.|+++...|.|+..++++.... ..++..++++     |++
T Consensus       164 ~all~sSGy~AN~~~i~aL~~~~-~~~~~~~~~~~~~~d~i~~D~~~HaSI~dG~~ls~~~~~a~~~~f~HN-----D~~  237 (476)
T PLN02955        164 DCLVCPTGFAANMAAMVAIGSVA-SLLAASGKPLKNEKVAIFSDALNHASIIDGVRLAERQGNVEVFVYRHC-----DMY  237 (476)
T ss_pred             cEEEECChHHHHHHHHHHHhhcc-ccccccccccCCCCcEEEEeccchHHHHHHHHhccccCCceEEEeCCC-----CHH
Confidence            57899999999998887653110 000000000 025668999999999999999987421 1267788888     999


Q ss_pred             HHHHHHHHhhhcCCCcEEEEEeccCCccccccCHHHHHHHHHHcCCEEEEecccccccccccchhhhh--cCC-CCccEE
Q psy14299         82 FLEQTIQTSLAEKKIPLFVNATAGTTVLGAFDPLDEIATVCEKYDLWMHVDACWGGSLIFSEKYSFVL--KGI-NRANSV  158 (448)
Q Consensus        82 ~Le~~l~~~~~~~~~~~lVv~~~~~t~tG~~~~l~~I~~ia~~~g~~l~VD~A~~~~~~~~~~~~~~~--~~~-~~aD~~  158 (448)
                      +|++.|++..   .+.++|++....++.|.+.|+++|.++|++||++++||.||+.+.+--. ....+  .++ ...|++
T Consensus       238 ~Le~~L~~~~---~~~~~Vv~EgV~SmdGdiapL~eL~~L~~~~ga~LiVDEAH~~Gv~G~~-G~G~~e~~g~~~di~ii  313 (476)
T PLN02955        238 HLNSLLSSCK---MKRKVVVTDSLFSMDGDFAPMEELSQLRKKYGFLLVIDDAHGTFVCGEN-GGGVAEEFNCEADVDLC  313 (476)
T ss_pred             HHHHHHHhCC---CCceEEEEeCCCCCCCCcCCHHHHHHHHHHcCcEEEEcccccCceecCC-CCcHHHHhCCCCCCcEE
Confidence            9999997642   2356888899999999999999999999999999999999998876221 11111  111 357899


Q ss_pred             EECCccccCCCCceEEEEEeccchhhhhccCCcccccccCcccccccCCCCCcccCCCCchhHHHHHHHHHhChHHHHHH
Q psy14299        159 SWNPHKMLGAPLQCSILLIKEKGLLHQANATAATYLFQQDKFYDVSFDTGDKSVQCGRKVDAFKLWLMWKARGNLGFRHF  238 (448)
Q Consensus       159 ~~s~hK~l~~P~g~G~l~vr~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~g~~~~  238 (448)
                      +.++.|.+++..  |+ ++.++...........+|+++...                 +  . ..               
T Consensus       314 ~~TLsKA~G~~G--Gf-i~gs~~~~~~l~~~~~~~ifStal-----------------p--p-~~---------------  355 (476)
T PLN02955        314 VGTLSKAAGCHG--GF-IACSKKWKQLIQSRGRSFIFSTAI-----------------P--V-PM---------------  355 (476)
T ss_pred             EEeCccchhccC--ce-eecHHHHHHHHHHhCCCCeecccc-----------------c--H-HH---------------
Confidence            999999988653  33 444444555544455566654321                 0  0 00               


Q ss_pred             HHHhhhhccCCCccchhhhhhhhhhhhhhhhhhhhhhhccccccccccCCCCCccccccchhhHHHHHHHHHhcCccHHH
Q psy14299        239 VDNAVDCSRGSMTFSTLLCFDLQGLLHQANATAATYLFQQDKFYDVSFDTGDKSVQCGRKVDAFKLWLMWKARGNLGFRH  318 (448)
Q Consensus       239 i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~  318 (448)
                                                                                    +.+...+++....+  +.
T Consensus       356 --------------------------------------------------------------aaa~laal~l~~~~--~~  371 (476)
T PLN02955        356 --------------------------------------------------------------AAAAYAAVVVARKE--KW  371 (476)
T ss_pred             --------------------------------------------------------------HHHHHHHHHHHhcC--HH
Confidence                                                                          00001111111111  23


Q ss_pred             HHHHHHHHHHHHHHHhhcCCCeEEeccCCceeeEEEEeeccCCCccccchhhhhhhhhhhHHHHHHHHhCCcEEEE----
Q psy14299        319 FVDNAVDCSRYFLSQISQRPGFRLVIPEFQCTNICFWFIPVSLRDKVEDETWWSTLSKVAPRIKEKLVLGGTLMIG----  394 (448)
Q Consensus       319 ~~~~~~~l~~~~~~~L~~~pg~~l~~~~~~~~~v~f~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~L~~~g~~~~~----  394 (448)
                      ++++..++.++|++.   . |+.+     .++++.+.+..                +....++.++|.++|+ ++.    
T Consensus       372 ~r~~L~~n~~~fr~~---~-G~~~-----~sPI~pI~ig~----------------~~~a~~~~~~L~~~Gi-~v~~i~y  425 (476)
T PLN02955        372 RRKAIWERVKEFKAL---S-GVDI-----SSPIISLVVGN----------------QEKALKASRYLLKSGF-HVMAIRP  425 (476)
T ss_pred             HHHHHHHHHHHHHHh---c-CCCC-----CCCEEEEEeCC----------------HHHHHHHHHHHHHCCC-EEEEECC
Confidence            556777888888874   2 5542     26666665421                1123478899999994 444    


Q ss_pred             eeecCCcccccEEEEEecCCCCCCHHHHHHHHHHHHHHHHHhH
Q psy14299        395 YQPLQHRNLHNFFRLVTTCHPASSRQDMDYAIDQIELRGAEVD  437 (448)
Q Consensus       395 ~~~~~g~~~~~~lRis~~~~~~~t~edid~l~~al~~~~~~~~  437 (448)
                      |.++.+.   ..+|+++  +..+|++||++++++|.++.....
T Consensus       426 PtVP~g~---~rLRi~l--sA~Ht~edId~lv~~L~~~~~~~~  463 (476)
T PLN02955        426 PTVPPNS---CRLRVTL--SAAHTTEDVKKLITALSSCLDFDN  463 (476)
T ss_pred             CCCCCCC---ceEEEee--CCCCCHHHHHHHHHHHHHHHhhhc
Confidence            4444554   7899999  789999999999999998876544

>PRK00011 glyA serine hydroxymethyltransferase; Reviewed

Probab=99.82  E-value=1.3e-18  Score=179.39  Aligned_cols=288  Identities=15%  Similarity=0.144  Sum_probs=177.2

Q ss_pred             EEeCcHHHHHHHHHHHHHHhcCCcccccCCCCCCCeEEEecCCCchHHHHH---HHHhCCCCCcEEEEecCC-CCCcCHH
Q psy14299          6 FLLPGGSISNMYSICLARYRLDPDTKRKGLSHLPPLCMFTSEDSHYSMLKA---AHWLGIGMDNVIRVKTNE-RGQMICS   81 (448)
Q Consensus         6 ~~t~ggT~an~~al~~a~~~~~~~~~~~G~~~~~~~~Vl~~~~~H~s~~~~---~~~~g~~~~~v~~v~~~~-~g~id~e   81 (448)
                      +++++||+++..++.+...              +++.|+++..+|.++...   ....+.+ .+++.++.++ ++.+|++
T Consensus        91 i~~~sgt~al~~~l~~l~~--------------~gd~Vl~~~~~~~~~~~~~~~~~~~~~g-~~~~~~~~~~~~~~~d~~  155 (416)
T PRK00011         91 VQPHSGSQANAAVYFALLK--------------PGDTILGMDLAHGGHLTHGSPVNFSGKL-YNVVSYGVDEETGLIDYD  155 (416)
T ss_pred             eecCCchHHHHHHHHHhcC--------------CCCEEEEeccccCCccccccccccccce-eeEeecCcCcccCCcCHH
Confidence            4445688998777765532              677899999998764321   1112211 1566777763 5899999


Q ss_pred             HHHHHHHHhhhcCCCcEEEEEeccCCccccccCHHHHHHHHHHcCCEEEEecccccccccccchhhhhcCCCCccEEEEC
Q psy14299         82 FLEQTIQTSLAEKKIPLFVNATAGTTVLGAFDPLDEIATVCEKYDLWMHVDACWGGSLIFSEKYSFVLKGINRANSVSWN  161 (448)
Q Consensus        82 ~Le~~l~~~~~~~~~~~lVv~~~~~t~tG~~~~l~~I~~ia~~~g~~l~VD~A~~~~~~~~~~~~~~~~~~~~aD~~~~s  161 (448)
                      ++++++++.     ++++|+++.  +.+|...|+++|.++|++||+++++|+||+.+..........+.   .+|+++.|
T Consensus       156 ~l~~~i~~~-----~~k~v~~~~--~~~~~~~~~~~I~~la~~~~~~livD~a~~~g~~~~g~~~~~~~---~~di~~~S  225 (416)
T PRK00011        156 EVEKLALEH-----KPKLIIAGA--SAYSRPIDFKRFREIADEVGAYLMVDMAHIAGLVAAGVHPSPVP---HADVVTTT  225 (416)
T ss_pred             HHHHHHHhc-----CCCEEEECC--CcCCCccCHHHHHHHHHHcCCEEEEECcchhcccccCccCCCCC---CCcEEEec
Confidence            999999651     467777654  34677889999999999999999999999876553221111122   47999999


Q ss_pred             CccccCCCCceEEEEEeccchhhhhccCCcccccccCcccccccCCCCCcccCCCCchhHHHHHHHHHhChHHHHHHHHH
Q psy14299        162 PHKMLGAPLQCSILLIKEKGLLHQANATAATYLFQQDKFYDVSFDTGDKSVQCGRKVDAFKLWLMWKARGNLGFRHFVDN  241 (448)
Q Consensus       162 ~hK~l~~P~g~G~l~vr~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~g~~~~i~~  241 (448)
                      +||++++|.|. +++.+++++..........+...                  +...                       
T Consensus       226 ~~K~l~g~~gg-~i~~~~~~~~~~l~~~~~~~~~~------------------~~~~-----------------------  263 (416)
T PRK00011        226 THKTLRGPRGG-LILTNDEELAKKINSAVFPGIQG------------------GPLM-----------------------  263 (416)
T ss_pred             CCcCCCCCCce-EEEeCCHHHHHHHHHHhCccccC------------------CccH-----------------------
Confidence            99999887754 44444434433322111111000                  0000                       


Q ss_pred             hhhhccCCCccchhhhhhhhhhhhhhhhhhhhhhhccccccccccCCCCCccccccchhhHHHHHHHHHhcCccHHHHHH
Q psy14299        242 AVDCSRGSMTFSTLLCFDLQGLLHQANATAATYLFQQDKFYDVSFDTGDKSVQCGRKVDAFKLWLMWKARGNLGFRHFVD  321 (448)
Q Consensus       242 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~  321 (448)
                                                                               ....++..++.....++++++.+
T Consensus       264 ---------------------------------------------------------~~~aa~~~a~~~~~~~~~~~~~~  286 (416)
T PRK00011        264 ---------------------------------------------------------HVIAAKAVAFKEALEPEFKEYAQ  286 (416)
T ss_pred             ---------------------------------------------------------HHHHHHHHHHHHHHhhhHHHHHH
Confidence                                                                     00111112222223456788889


Q ss_pred             HHHHHHHHHHHHhhcCCCeEEeccC-CceeeEEEEeeccCCCccccchhhhhhhhhhhHHHHHHHHhCCcEEEEee--ec
Q psy14299        322 NAVDCSRYFLSQISQRPGFRLVIPE-FQCTNICFWFIPVSLRDKVEDETWWSTLSKVAPRIKEKLVLGGTLMIGYQ--PL  398 (448)
Q Consensus       322 ~~~~l~~~~~~~L~~~pg~~l~~~~-~~~~~v~f~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~L~~~g~~~~~~~--~~  398 (448)
                      +..++++++++.|+++ |++++ .. ...+.+.+.+.+.++.               ..++.+.|.++|+ .+...  +.
T Consensus       287 ~~~~~~~~l~~~L~~~-g~~~~-~~~~~~~~~~i~~~~~~~~---------------~~~~~~~L~~~GI-~v~~~~~p~  348 (416)
T PRK00011        287 QVVKNAKALAEALAER-GFRVV-SGGTDNHLVLVDLRSKGLT---------------GKEAEAALEEANI-TVNKNAVPF  348 (416)
T ss_pred             HHHHHHHHHHHHHHhC-CCeee-ecCCCCeEEEEeCcccCCC---------------HHHHHHHHHHcCc-EEccCcCCC
Confidence            9999999999999997 89876 31 2335445543222211               1367888888884 44311  11


Q ss_pred             --CCcccccEEEEEecC--CCCCCHHHHHHHHHHHHHHHHH
Q psy14299        399 --QHRNLHNFFRLVTTC--HPASSRQDMDYAIDQIELRGAE  435 (448)
Q Consensus       399 --~g~~~~~~lRis~~~--~~~~t~edid~l~~al~~~~~~  435 (448)
                        .....+..+|++...  +...|++|+++++++|+++...
T Consensus       349 ~~~~~~~~~~~Ri~~~~~~~~~~t~~di~~l~~~l~~~~~~  389 (416)
T PRK00011        349 DPRSPFVTSGIRIGTPAITTRGFKEAEMKEIAELIADVLDN  389 (416)
T ss_pred             CCCCCCCCCceEecCHHHhhcCcCHHHHHHHHHHHHHHHhc
Confidence              111113579997621  1245799999999999998665

>PRK08361 aspartate aminotransferase; Provisional

Probab=99.82  E-value=5.4e-18  Score=173.35  Aligned_cols=152  Identities=13%  Similarity=0.049  Sum_probs=116.8

Q ss_pred             cEEEeCcHHHHHHHHHHHHHHhcCCcccccCCCCCCCeEEEecCCCchHHHHHHHHhCCCCCcEEEEecCCC--CCcCHH
Q psy14299          4 KPFLLPGGSISNMYSICLARYRLDPDTKRKGLSHLPPLCMFTSEDSHYSMLKAAHWLGIGMDNVIRVKTNER--GQMICS   81 (448)
Q Consensus         4 ~g~~t~ggT~an~~al~~a~~~~~~~~~~~G~~~~~~~~Vl~~~~~H~s~~~~~~~~g~~~~~v~~v~~~~~--g~id~e   81 (448)
                      ..++|+|+|+++.+++.+...              +++.|++++.+|.++...+...|.   +++.+|.+++  +.+|++
T Consensus        95 ~i~~t~G~~~al~~~~~~l~~--------------~g~~Vlv~~p~y~~~~~~~~~~g~---~~~~v~~~~~~~~~~d~~  157 (391)
T PRK08361         95 NVIVTAGAYEATYLAFESLLE--------------EGDEVIIPDPAFVCYVEDAKIAEA---KPIRIPLREENEFQPDPD  157 (391)
T ss_pred             cEEEeCChHHHHHHHHHHhcC--------------CCCEEEEcCCCCcccHHHHHHcCC---EEEEEecCCccCCCCCHH
Confidence            478999999998887766543              566788999999999999998888   7889988763  479999


Q ss_pred             HHHHHHHHhhhcCCCcEEEEEeccCCccccccC---HHHHHHHHHHcCCEEEEecccccccccccchhhhhcCCCCccEE
Q psy14299         82 FLEQTIQTSLAEKKIPLFVNATAGTTVLGAFDP---LDEIATVCEKYDLWMHVDACWGGSLIFSEKYSFVLKGINRANSV  158 (448)
Q Consensus        82 ~Le~~l~~~~~~~~~~~lVv~~~~~t~tG~~~~---l~~I~~ia~~~g~~l~VD~A~~~~~~~~~~~~~~~~~~~~aD~~  158 (448)
                      ++++.+++      ++++|++++++|+||...|   +++|+++|+++++++++|++++...................+++
T Consensus       158 ~l~~~i~~------~~~~v~i~~p~NPtG~~~~~~~~~~l~~~~~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~i~  231 (391)
T PRK08361        158 ELLELITK------RTRMIVINYPNNPTGATLDKEVAKAIADIAEDYNIYILSDEPYEHFLYEGAKHYPMIKYAPDNTIL  231 (391)
T ss_pred             HHHHhccc------ccEEEEEeCCCCCCCcCcCHHHHHHHHHHHHHcCeEEEEEcccccceeCCCCCCCHhhcCCCCEEE
Confidence            99998864      4789999999999999999   88999999999999999999875543211111111111124678


Q ss_pred             EECCccccCCCCc--eEEEEEec
Q psy14299        159 SWNPHKMLGAPLQ--CSILLIKE  179 (448)
Q Consensus       159 ~~s~hK~l~~P~g--~G~l~vr~  179 (448)
                      +.|++|.++.| |  +|+++..+
T Consensus       232 ~~s~SK~~~~~-GlRiG~~~~~~  253 (391)
T PRK08361        232 ANSFSKTFAMT-GWRLGFVIAPE  253 (391)
T ss_pred             EecCchhcCCc-HhhhhhhccCH
Confidence            89999988765 5  77777643

>TIGR00858 bioF 8-amino-7-oxononanoate synthase

Probab=99.81  E-value=1e-17  Score=168.56  Aligned_cols=279  Identities=15%  Similarity=0.162  Sum_probs=178.3

Q ss_pred             cEEEeCcHHHHHHHHHHHHHHhcCCcccccCCCCCCCeEEEecCCCchHHHHHHHHhCCCCCcEEEEecCCCCCcCHHHH
Q psy14299          4 KPFLLPGGSISNMYSICLARYRLDPDTKRKGLSHLPPLCMFTSEDSHYSMLKAAHWLGIGMDNVIRVKTNERGQMICSFL   83 (448)
Q Consensus         4 ~g~~t~ggT~an~~al~~a~~~~~~~~~~~G~~~~~~~~Vl~~~~~H~s~~~~~~~~g~~~~~v~~v~~~~~g~id~e~L   83 (448)
                      ..+++++|+++++.++.++..              +++.|++++..|.++..+++..|.   +++.++.     +|+++|
T Consensus        78 ~~i~~~~G~~~~~~~l~~~~~--------------~gd~v~~~~~~~~~~~~~~~~~g~---~~~~~~~-----~d~~~l  135 (360)
T TIGR00858        78 AALLFSSGYLANVGVISALVG--------------KGDLILSDALNHASLIDGCRLSGA---RVRRYRH-----NDVEHL  135 (360)
T ss_pred             CEEEECchHHHHHHHHHHhCC--------------CCCEEEEEccccHHHHHHHHhcCC---ceEEecC-----CCHHHH
Confidence            356777788887766554422              567788999999999999998887   6766663     589999


Q ss_pred             HHHHHHhhhcCCCcEEEEEeccCCccccccCHHHHHHHHHHcCCEEEEecccccccccccchh-hhhcCC--CCccEEEE
Q psy14299         84 EQTIQTSLAEKKIPLFVNATAGTTVLGAFDPLDEIATVCEKYDLWMHVDACWGGSLIFSEKYS-FVLKGI--NRANSVSW  160 (448)
Q Consensus        84 e~~l~~~~~~~~~~~lVv~~~~~t~tG~~~~l~~I~~ia~~~g~~l~VD~A~~~~~~~~~~~~-~~~~~~--~~aD~~~~  160 (448)
                      ++.+++..  +.++++|++.++.+++|...|+++|.++|+++|+++++|++|+.+.+..+... ....++  ...|+++.
T Consensus       136 ~~~~~~~~--~~~~~~v~~~~~~~~~G~~~~~~~i~~l~~~~~~~li~De~~~~~~~~~~~~~~~~~~~~~~~~~~i~i~  213 (360)
T TIGR00858       136 ERLLEKNR--GERRKLIVTDGVFSMDGDIAPLPQLVALAERYGAWLMVDDAHGTGVLGEDGRGTLEHFGLKPEPVDIQVG  213 (360)
T ss_pred             HHHHHHcc--cCCCeEEEEeCCccCCCCCcCHHHHHHHHHHcCcEEEEECcccccCcCCCCCchHHhcCCCccCCcEEEE
Confidence            99986521  12467888888899999999999999999999999999999986654221100 001111  14688899


Q ss_pred             CCccccCCCCceEEEEEeccchhhhhccCCcccccccCcccccccCCCCCcccCCCCchhHHHHHHHHHhChHHHHHHHH
Q psy14299        161 NPHKMLGAPLQCSILLIKEKGLLHQANATAATYLFQQDKFYDVSFDTGDKSVQCGRKVDAFKLWLMWKARGNLGFRHFVD  240 (448)
Q Consensus       161 s~hK~l~~P~g~G~l~vr~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~g~~~~i~  240 (448)
                      +++|+++.+ | |+++. ++++..........+...                 .+..  .                    
T Consensus       214 s~sK~~~~~-g-G~~~~-~~~~~~~~~~~~~~~~~~-----------------~~~~--~--------------------  251 (360)
T TIGR00858       214 TLSKALGSY-G-AYVAG-SQALIDYLINRARTLIFS-----------------TALP--P--------------------  251 (360)
T ss_pred             echhhhhcc-C-cEEEc-CHHHHHHHHHhCccceec-----------------CCCC--H--------------------
Confidence            999999764 3 66554 333333221111111100                 0000  0                    


Q ss_pred             HhhhhccCCCccchhhhhhhhhhhhhhhhhhhhhhhccccccccccCCCCCccccccchhhHHHHHHHHHhcCccHHHHH
Q psy14299        241 NAVDCSRGSMTFSTLLCFDLQGLLHQANATAATYLFQQDKFYDVSFDTGDKSVQCGRKVDAFKLWLMWKARGNLGFRHFV  320 (448)
Q Consensus       241 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~  320 (448)
                                                                                ..+.++..+++....  .+++.
T Consensus       252 ----------------------------------------------------------~~~~a~~~al~~~~~--~~~~~  271 (360)
T TIGR00858       252 ----------------------------------------------------------AVAAAALAALELIQE--EPWRR  271 (360)
T ss_pred             ----------------------------------------------------------HHHHHHHHHHHHHhh--CHHHH
Confidence                                                                      001111122332221  24567


Q ss_pred             HHHHHHHHHHHHHhhcCCCeEEeccCCceeeEEEEeeccCCCccccchhhhhhhhhhhHHHHHHHHhCCcEEEEeeecCC
Q psy14299        321 DNAVDCSRYFLSQISQRPGFRLVIPEFQCTNICFWFIPVSLRDKVEDETWWSTLSKVAPRIKEKLVLGGTLMIGYQPLQH  400 (448)
Q Consensus       321 ~~~~~l~~~~~~~L~~~pg~~l~~~~~~~~~v~f~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~L~~~g~~~~~~~~~~g  400 (448)
                      ++..++++++.+.|+++ ++++.  ++..+.+.+.+ +...               ...++.+.|.++| +.+.+....+
T Consensus       272 ~~~~~~~~~l~~~L~~~-~~~~~--~~~~~~~~~~~-~~~~---------------~~~~~~~~l~~~g-I~v~~~~~~~  331 (360)
T TIGR00858       272 EKLLALIARLRAGLEAL-GFTLM--PSCTPIVPVII-GDNA---------------SALALAEELQQQG-IFVGAIRPPT  331 (360)
T ss_pred             HHHHHHHHHHHHHHHHc-CCccC--CCCCCEEEEEe-CCHH---------------HHHHHHHHHHHCC-eeEeeeCCCC
Confidence            88889999999999997 77764  34445554443 1110               1237889999998 5554322111


Q ss_pred             -cccccEEEEEecCCCCCCHHHHHHHHHHHH
Q psy14299        401 -RNLHNFFRLVTTCHPASSRQDMDYAIDQIE  430 (448)
Q Consensus       401 -~~~~~~lRis~~~~~~~t~edid~l~~al~  430 (448)
                       ...++++|+++  +.+++++|+++++++|+
T Consensus       332 ~~~~~~~iRis~--~~~~~~~~i~~~l~~l~  360 (360)
T TIGR00858       332 VPAGTSRLRLTL--SAAHTPGDIDRLAEALK  360 (360)
T ss_pred             CCCCCceEEEEE--cCCCCHHHHHHHHHhhC
Confidence             11126899999  68999999999999874

This model represents 8-amino-7-oxononanoate synthase, the BioF protein of biotin biosynthesis. This model is based on a careful phylogenetic analysis to separate members of this family from 2-amino-3-ketobutyrate and other related pyridoxal phosphate-dependent enzymes. In several species, including Staphylococcus and Coxiella, a candidate 8-amino-7-oxononanoate synthase is confirmed by location in the midst of a biotin biosynthesis operon but scores below the trusted cutoff of this model.

>TIGR01825 gly_Cac_T_rel pyridoxal phosphate-dependent acyltransferase, putative

Probab=99.81  E-value=1.8e-17  Score=168.81  Aligned_cols=284  Identities=14%  Similarity=0.126  Sum_probs=179.3

Q ss_pred             EEEeCcHHHHHHHHHHHHHHhcCCcccccCCCCCCCeEEEecCCCchHHHHHHHHhCCCCCcEEEEecCCCCCcCHHHHH
Q psy14299          5 PFLLPGGSISNMYSICLARYRLDPDTKRKGLSHLPPLCMFTSEDSHYSMLKAAHWLGIGMDNVIRVKTNERGQMICSFLE   84 (448)
Q Consensus         5 g~~t~ggT~an~~al~~a~~~~~~~~~~~G~~~~~~~~Vl~~~~~H~s~~~~~~~~g~~~~~v~~v~~~~~g~id~e~Le   84 (448)
                      .+++++|+++++.++.+...              +++.|+++...|.++..++...|.   ++..++     .+|+++++
T Consensus        96 ~i~~~sG~~a~~~a~~~~~~--------------~gd~vi~~~~~~~~~~~~~~~~g~---~~~~~~-----~~d~~~l~  153 (385)
T TIGR01825        96 ALVFQSGFNTNQGVLSALLR--------------KGDIVLSDELNHASIIDGLRLTKA---TKKIYK-----HADMDDLD  153 (385)
T ss_pred             EEEECcHHHHHHHHHHHhCC--------------CCCEEEEEccccHHHHHHHHhcCC---ceEEeC-----CCCHHHHH
Confidence            46667778998877765533              566888999999999888887776   454443     47899999


Q ss_pred             HHHHHhhhcCCCcEEEEEeccCCccccccCHHHHHHHHHHcCCEEEEecccccccccccchh-hhhcCC-CCccEEEECC
Q psy14299         85 QTIQTSLAEKKIPLFVNATAGTTVLGAFDPLDEIATVCEKYDLWMHVDACWGGSLIFSEKYS-FVLKGI-NRANSVSWNP  162 (448)
Q Consensus        85 ~~l~~~~~~~~~~~lVv~~~~~t~tG~~~~l~~I~~ia~~~g~~l~VD~A~~~~~~~~~~~~-~~~~~~-~~aD~~~~s~  162 (448)
                      +.+.+..  ..++++|++.+..+++|.+.|+++|.++|++||+++++|++|+.+.+...... ....++ ...|+++.++
T Consensus       154 ~~l~~~~--~~~~~~v~~~~v~~~tG~~~~~~~i~~l~~~~~~~li~De~~~~~~~~~~~~~~~~~~~~~~~~~i~~~s~  231 (385)
T TIGR01825       154 RVLRENP--SYGKKLIVTDGVFSMDGDVAPLPEIVELAERYGAVTYVDDAHGSGVMGEAGRGTVHHFGLEDKVDIQVGTL  231 (385)
T ss_pred             HHHHhhc--cCCCeEEEEecCCcCCCCccCHHHHHHHHHHhCCEEEEECcccccCcCCCCCccHhhcCCCcCCcEEEEec
Confidence            9887532  13578888888899999999999999999999999999999976654211100 000011 2468889999


Q ss_pred             ccccCCCCceEEEEEeccchhhhhccCCcccccccCcccccccCCCCCcccCCCCchhHHHHHHHHHhChHHHHHHHHHh
Q psy14299        163 HKMLGAPLQCSILLIKEKGLLHQANATAATYLFQQDKFYDVSFDTGDKSVQCGRKVDAFKLWLMWKARGNLGFRHFVDNA  242 (448)
Q Consensus       163 hK~l~~P~g~G~l~vr~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~g~~~~i~~~  242 (448)
                      +|+++.+.  |+++. +++...........|....                 .  ...                      
T Consensus       232 sK~~~~~g--G~~~~-~~~~~~~~~~~~~~~~~~~-----------------~--~~~----------------------  267 (385)
T TIGR01825       232 SKAIGVVG--GYAAG-HKELIEYLKNRARPFLFST-----------------A--QPP----------------------  267 (385)
T ss_pred             cHHhhcCC--CEEec-CHHHHHHHHHhCccccccC-----------------C--CCH----------------------
Confidence            99997654  55544 3333333221111111100                 0  000                      


Q ss_pred             hhhccCCCccchhhhhhhhhhhhhhhhhhhhhhhccccccccccCCCCCccccccchhhHHHHHHHHHhcCccHHHHHHH
Q psy14299        243 VDCSRGSMTFSTLLCFDLQGLLHQANATAATYLFQQDKFYDVSFDTGDKSVQCGRKVDAFKLWLMWKARGNLGFRHFVDN  322 (448)
Q Consensus       243 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~  322 (448)
                                                                              +.+.++..+++.....  ++..++
T Consensus       268 --------------------------------------------------------~~~~a~~~al~~~~~~--~~~~~~  289 (385)
T TIGR01825       268 --------------------------------------------------------AVVAALAAAVDELQRS--PELMER  289 (385)
T ss_pred             --------------------------------------------------------HHHHHHHHHHHHHhcC--HHHHHH
Confidence                                                                    0011111222221111  234566


Q ss_pred             HHHHHHHHHHHhhcCCCeEEeccCCceeeEEEEeeccCCCccccchhhhhhhhhhhHHHHHHHHhCCcEEEEeeecCC-c
Q psy14299        323 AVDCSRYFLSQISQRPGFRLVIPEFQCTNICFWFIPVSLRDKVEDETWWSTLSKVAPRIKEKLVLGGTLMIGYQPLQH-R  401 (448)
Q Consensus       323 ~~~l~~~~~~~L~~~pg~~l~~~~~~~~~v~f~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~L~~~g~~~~~~~~~~g-~  401 (448)
                      ..++++++.+.|+++ |++++  .+..+.+.+...+ ..               ...++.+.|.++|+ .+.+..+.. .
T Consensus       290 ~~~~~~~l~~~L~~~-g~~~~--~~~~~~~~~~~~~-~~---------------~~~~~~~~L~~~gi-~v~~~~~~~~~  349 (385)
T TIGR01825       290 LWDNTRFFKAGLGKL-GYDTG--GSETPITPVVIGD-EK---------------AAQEFSRRLFDEGI-FAQSIVFPTVP  349 (385)
T ss_pred             HHHHHHHHHHHHHHc-CCCCC--CCCCCEEEEEECC-HH---------------HHHHHHHHHHHCCc-EEcccCCCCCC
Confidence            677899999999987 88875  3444444443211 00               12368889989984 443322211 1


Q ss_pred             ccccEEEEEecCCCCCCHHHHHHHHHHHHHHHHHh
Q psy14299        402 NLHNFFRLVTTCHPASSRQDMDYAIDQIELRGAEV  436 (448)
Q Consensus       402 ~~~~~lRis~~~~~~~t~edid~l~~al~~~~~~~  436 (448)
                      ....++|+++  +.+++++|+++++++|+++.++.
T Consensus       350 ~~~~~iRi~~--~~~~~~e~i~~~~~~l~~~~~~~  382 (385)
T TIGR01825       350 RGTARIRNIP--TAEHTKDDLDQALDAYEKVGKEL  382 (385)
T ss_pred             CCCceEEEEE--cCCCCHHHHHHHHHHHHHHHHHh
Confidence            1126899999  78999999999999999987643

This model represents an enzyme subfamily related to three known enzymes; it appears closest to glycine C-acteyltransferase, shows no overlap with it in species distribution, and may share that function. The three closely related enzymes are glycine C-acetyltransferase (2-amino-3-ketobutyrate coenzyme A ligase), 5-aminolevulinic acid synthase, and 8-amino-7-oxononanoate synthase. All transfer the R-group (acetyl, succinyl, or 6-carboxyhexanoyl) from coenzyme A to an amino acid (Gly, Gly, Ala, respectively), with release of CO2 for the latter two reactions.

>PRK15029 arginine decarboxylase; Provisional

Probab=99.81  E-value=6.1e-18  Score=182.38  Aligned_cols=158  Identities=20%  Similarity=0.185  Sum_probs=126.4

Q ss_pred             cEEEeCcHHHHHHHHHHHHHHhcCCcccccCCCCCCCeEEEecCCCchHHHHHHHHhCCCCCcEEEEecCC--C---CCc
Q psy14299          4 KPFLLPGGSISNMYSICLARYRLDPDTKRKGLSHLPPLCMFTSEDSHYSMLKAAHWLGIGMDNVIRVKTNE--R---GQM   78 (448)
Q Consensus         4 ~g~~t~ggT~an~~al~~a~~~~~~~~~~~G~~~~~~~~Vl~~~~~H~s~~~~~~~~g~~~~~v~~v~~~~--~---g~i   78 (448)
                      +-+.|+|+|.+|..++.+++.              +++.|++++++|.|+..++.+.|+   ..+++++..  .   +.+
T Consensus       223 t~FlvNGST~gn~a~i~a~~~--------------~gd~Vlv~RN~HKSv~~al~L~ga---~Pvyl~P~~~~~Gi~~~i  285 (755)
T PRK15029        223 SWSVVVGTSGSNRTIMQACMT--------------DNDVVVVDRNCHKSIEQGLILTGA---KPVYMVPSRNRYGIIGPI  285 (755)
T ss_pred             EEEEeCChhHHHHHHHHHhcC--------------CCCEEEeecccHHHHHHHHHHcCC---eEEEecccccccCCccCC
Confidence            446778888888877776665              677899999999999999999999   566665432  1   355


Q ss_pred             C-----HHHHHHHHHHhhh----cCCCcEEEEEeccCCccccccCHHHHHHHHHHcCCEEEEecccccccccccchhhhh
Q psy14299         79 I-----CSFLEQTIQTSLA----EKKIPLFVNATAGTTVLGAFDPLDEIATVCEKYDLWMHVDACWGGSLIFSEKYSFVL  149 (448)
Q Consensus        79 d-----~e~Le~~l~~~~~----~~~~~~lVv~~~~~t~tG~~~~l~~I~~ia~~~g~~l~VD~A~~~~~~~~~~~~~~~  149 (448)
                      +     ++.++++|++...    .+.+|++|+++++++ .|...|+++|+++||++|++++||+|||++..+.+.++.. 
T Consensus       286 ~~~~~~~e~i~~~l~~~p~~k~~~~~~~~avvlt~PTY-~Gv~~di~~I~~~~h~~~~~llvDEAhGah~~F~~~~p~~-  363 (755)
T PRK15029        286 YPQEMQPETLQKKISESPLTKDKAGQKPSYCVVTNCTY-DGVCYNAKEAQDLLEKTSDRLHFDEAWYGYARFNPIYADH-  363 (755)
T ss_pred             CccccCHHHHHHHHHhCchhhhccccCceEEEEECCCC-cceeeCHHHHHHHHHhcCCeEEEECccccccccCcccccc-
Confidence            5     9999999976321    234677999999888 9999999999999999999999999999988766654421 


Q ss_pred             cCC-------CCcc-EEEECCccccCCCCceEEEEEecc
Q psy14299        150 KGI-------NRAN-SVSWNPHKMLGAPLQCSILLIKEK  180 (448)
Q Consensus       150 ~~~-------~~aD-~~~~s~hK~l~~P~g~G~l~vr~~  180 (448)
                      ..+       .++| +++.|.||.|.+..+++++.+++.
T Consensus       364 sa~~~~~~~~~Gad~~vvqStHKtL~alTQaS~LHv~~~  402 (755)
T PRK15029        364 YAMRGEPGDHNGPTVFATHSTHKLLNALSQASYIHVREG  402 (755)
T ss_pred             ccccccccccCCCceEEEEchhhcccchhhhhhheeCCC
Confidence            111       3588 889999999999999999999654

>cd00615 Orn_deC_like Ornithine decarboxylase family

Probab=99.80  E-value=3.7e-19  Score=175.10  Aligned_cols=153  Identities=21%  Similarity=0.156  Sum_probs=121.2

Q ss_pred             EEEeCcHHHHHHHHHHHHHHhcCCcccccCCCCCCCeEEEecCCCchHHHHHHHHhCCCCCcEEEEecCCC------CCc
Q psy14299          5 PFLLPGGSISNMYSICLARYRLDPDTKRKGLSHLPPLCMFTSEDSHYSMLKAAHWLGIGMDNVIRVKTNER------GQM   78 (448)
Q Consensus         5 g~~t~ggT~an~~al~~a~~~~~~~~~~~G~~~~~~~~Vl~~~~~H~s~~~~~~~~g~~~~~v~~v~~~~~------g~i   78 (448)
                      .++|+|+|++|..++.+...              +++.|++++.+|.|+..++.+.|.   +++.++.+.+      +.+
T Consensus        78 ~~~~~Gst~a~~~~l~al~~--------------~gd~Vlv~~~~h~s~~~~~~~~g~---~~~~v~~~~~~~~~~~~~i  140 (294)
T cd00615          78 FFLVNGTSSSNKAVILAVCG--------------PGDKILIDRNCHKSVINGLVLSGA---VPVYLKPERNPYYGIAGGI  140 (294)
T ss_pred             EEEcCcHHHHHHHHHHHcCC--------------CCCEEEEeCCchHHHHHHHHHCCC---EEEEecCccCcccCcCCCC
Confidence            34588889999888766543              677899999999999999999887   6777766532      479


Q ss_pred             CHHHHHHHHHHhhhcCCCcEEEEEeccCCccccccCHHHHHHHHHHcCCEEEEecccccccccccchhhhhcCCCCccEE
Q psy14299         79 ICSFLEQTIQTSLAEKKIPLFVNATAGTTVLGAFDPLDEIATVCEKYDLWMHVDACWGGSLIFSEKYSFVLKGINRANSV  158 (448)
Q Consensus        79 d~e~Le~~l~~~~~~~~~~~lVv~~~~~t~tG~~~~l~~I~~ia~~~g~~l~VD~A~~~~~~~~~~~~~~~~~~~~aD~~  158 (448)
                      |++++++++++.    .++++|+++++ |++|.+.|+++|.++||++|++++||+||+.+..+.+..+..... ..+|++
T Consensus       141 ~~~~l~~~l~~~----~~~k~v~l~~p-~~~G~~~dl~~I~~~~~~~g~~livDeA~~~~~~~~~~~~~~~~~-~~~div  214 (294)
T cd00615         141 PPETFKKALIEH----PDAKAAVITNP-TYYGICYNLRKIVEEAHHRGLPVLVDEAHGAHFRFHPILPSSAAM-AGADIV  214 (294)
T ss_pred             CHHHHHHHHHhC----CCceEEEEECC-CCCCEecCHHHHHHHHHhcCCeEEEECcchhhhccCcccCcchhh-cCCcEE
Confidence            999999999752    35788999887 579999999999999999999999999999765433322211111 258999


Q ss_pred             EECCccccCCCCceEEEEEecc
Q psy14299        159 SWNPHKMLGAPLQCSILLIKEK  180 (448)
Q Consensus       159 ~~s~hK~l~~P~g~G~l~vr~~  180 (448)
                      +.|+||++++|.++|+++++++
T Consensus       215 ~~S~hK~l~g~~~~~~l~~~~~  236 (294)
T cd00615         215 VQSTHKTLPALTQGSMIHVKGD  236 (294)
T ss_pred             EEchhcccchHhHHHHHHhCCC
Confidence            9999999999988888887664

This family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). The major groups in this CD corresponds to ornithine decarboxylase (ODC), arginine decarboxylase (ADC) and lysine decarboxylase (LDC). ODC is a dodecamer composed of six homodimers and catalyzes the decarboxylation of tryptophan. ADC catalyzes the decarboxylation of arginine and LDC catalyzes the decarboxylation of lysine. Members of this family are widely found in all three forms of life.

>PF01276 OKR_DC_1: Orn/Lys/Arg decarboxylase, major domain; InterPro: IPR000310 Pyridoxal-dependent decarboxylases are bacterial proteins acting on ornithine, lysine, arginine and related substrates []

Probab=99.80  E-value=9.5e-19  Score=176.87  Aligned_cols=157  Identities=24%  Similarity=0.255  Sum_probs=117.5

Q ss_pred             cEEEeCcHHHHHHHHHHHHHHhcCCcccccCCCCCCCeEEEecCCCchHHHHHHHHhCCCCCcEEEEecCCC-----CCc
Q psy14299          4 KPFLLPGGSISNMYSICLARYRLDPDTKRKGLSHLPPLCMFTSEDSHYSMLKAAHWLGIGMDNVIRVKTNER-----GQM   78 (448)
Q Consensus         4 ~g~~t~ggT~an~~al~~a~~~~~~~~~~~G~~~~~~~~Vl~~~~~H~s~~~~~~~~g~~~~~v~~v~~~~~-----g~i   78 (448)
                      +-+.|+|+|.+|..++++++.              +++.|++++++|.|+..++.+.|+   ..+++++..+     +.+
T Consensus        84 t~flvnGsT~g~~a~i~a~~~--------------~gd~VLv~RN~HkSv~~alil~ga---~Pvyi~p~~~~~gi~~~i  146 (417)
T PF01276_consen   84 TFFLVNGSTSGNQAMIMALCR--------------PGDKVLVDRNCHKSVYNALILSGA---IPVYIPPEDNEYGIIGGI  146 (417)
T ss_dssp             EEEESSHHHHHHHHHHHHHTT--------------TTCEEEEETT--HHHHHHHHHHTE---EEEEEEEEE-TTS-BEEB
T ss_pred             EEEEecCchHHHHHHHHHhcC--------------CCCEEEEcCCcHHHHHHHHHHcCC---eEEEecCCccccCCccCC
Confidence            345667777888888887765              678899999999999999999999   6666665421     356


Q ss_pred             CH-----HHHHHHHHHhhhcCCCcEEEEEeccCCccccccCHHHHHHHHHHcCCEEEEecccccccccccchhhhhcCCC
Q psy14299         79 IC-----SFLEQTIQTSLAEKKIPLFVNATAGTTVLGAFDPLDEIATVCEKYDLWMHVDACWGGSLIFSEKYSFVLKGIN  153 (448)
Q Consensus        79 d~-----e~Le~~l~~~~~~~~~~~lVv~~~~~t~tG~~~~l~~I~~ia~~~g~~l~VD~A~~~~~~~~~~~~~~~~~~~  153 (448)
                      ++     +.++++|++..+.. .+++|+++++++ .|...|+++|+++||++|+.++||+|||++..+.+-... ...+ 
T Consensus       147 ~~~~~~~~~i~~~l~~~p~~k-~~~~vvlt~PTY-~Gv~~di~~I~~~~h~~~~~llvDEAhGah~~F~~lp~~-a~~~-  222 (417)
T PF01276_consen  147 SPDEFNEEDIEEALKEHPDAK-APRLVVLTSPTY-YGVCYDIKEIAEICHKHGIPLLVDEAHGAHFGFHPLPRS-ALAL-  222 (417)
T ss_dssp             -GGGGSHHHHHHHHHHCTTCH-CESEEEEESS-T-TSEEE-HHHHHHHHCCTECEEEEE-TT-TTGGCSGGGTT-CSST-
T ss_pred             ChhhhhHHHHHHHHHhCcccc-CceEEEEeCCCC-CeEEECHHHHHHHhcccCCEEEEEccccccccCCCCccc-hhhc-
Confidence            77     99999998743221 256699999888 999999999999999999999999999998876632222 1122 


Q ss_pred             Ccc-------EEEECCccccCCCCceEEEEEeccc
Q psy14299        154 RAN-------SVSWNPHKMLGAPLQCSILLIKEKG  181 (448)
Q Consensus       154 ~aD-------~~~~s~hK~l~~P~g~G~l~vr~~~  181 (448)
                      ++|       +++.|.||.|.+..+++++.+++..
T Consensus       223 gad~~~~~~~~vvqS~HKtL~altQts~lh~~~~~  257 (417)
T PF01276_consen  223 GADRPNDPGIIVVQSTHKTLPALTQTSMLHVKGDR  257 (417)
T ss_dssp             TSS-CTSBEEEEEEEHHHHSSS-TT-EEEEEETCC
T ss_pred             cCccccccceeeeechhhcccccccceEEEecCCC
Confidence            588       9999999999999999999998875

One of the regions of sequence similarity contains a conserved lysine residue, which is the site of attachment of the pyridoxal-phosphate group.; GO: 0003824 catalytic activity; PDB: 1C4K_A 1ORD_A 2X3L_B 3Q16_C 3N75_A 2VYC_D.

>TIGR01141 hisC histidinol-phosphate aminotransferase

Probab=99.80  E-value=2.2e-17  Score=165.91  Aligned_cols=271  Identities=15%  Similarity=0.129  Sum_probs=177.9

Q ss_pred             cEEEeCcHHHHHHHHHHHHHHhcCCcccccCCCCCCCeEEEecCCCchHHHHHHHHhCCCCCcEEEEecCCCCCcCHHHH
Q psy14299          4 KPFLLPGGSISNMYSICLARYRLDPDTKRKGLSHLPPLCMFTSEDSHYSMLKAAHWLGIGMDNVIRVKTNERGQMICSFL   83 (448)
Q Consensus         4 ~g~~t~ggT~an~~al~~a~~~~~~~~~~~G~~~~~~~~Vl~~~~~H~s~~~~~~~~g~~~~~v~~v~~~~~g~id~e~L   83 (448)
                      ..++|+|+|+++..++.....              +++.|+++...+..+...++..|.   +++.++.++++.+|++++
T Consensus        73 ~i~~~~G~~~~l~~~~~~l~~--------------~gd~v~~~~p~y~~~~~~~~~~g~---~~~~~~~~~~~~~d~~~l  135 (346)
T TIGR01141        73 QILLGNGSDEIIELLIRAFLE--------------PGDAVLVPPPTYSMYEISAKIHGA---EVVKVPLDEDGQLDLEDI  135 (346)
T ss_pred             HEEEcCCHHHHHHHHHHHhcC--------------CCCEEEEcCCCHHHHHHHHHHcCC---eEEEeccCCCCCCCHHHH
Confidence            468999999997666655433              456788888887777777888888   788999988888999999


Q ss_pred             HHHHHHhhhcCCCcEEEEEeccCCccccccCHHHHHHHHHHc--CCEEEEecccccccccccchhhhhcCCCCccEEEEC
Q psy14299         84 EQTIQTSLAEKKIPLFVNATAGTTVLGAFDPLDEIATVCEKY--DLWMHVDACWGGSLIFSEKYSFVLKGINRANSVSWN  161 (448)
Q Consensus        84 e~~l~~~~~~~~~~~lVv~~~~~t~tG~~~~l~~I~~ia~~~--g~~l~VD~A~~~~~~~~~~~~~~~~~~~~aD~~~~s  161 (448)
                      ++.+.+      ++++|++++++|++|...|++++.++++.+  |+++++|++|+..... .......... ..++++.|
T Consensus       136 ~~~~~~------~~~~v~l~~p~NptG~~~~~~~~~~l~~~~~~~~~ii~D~~y~~~~~~-~~~~~~~~~~-~~~i~~~S  207 (346)
T TIGR01141       136 LVAIDD------KPKLVFLCSPNNPTGNLLSRSDIEAVLERTPEDALVVVDEAYGEFSGE-PSTLPLLAEY-PNLIVLRT  207 (346)
T ss_pred             HHhcCC------CCCEEEEeCCCCCCCCCCCHHHHHHHHHhCCCCcEEEEECchhhhcCC-ccHHHHHhhC-CCEEEEeh
Confidence            997633      578999999999999999999999999887  9999999998843221 0111111111 12466678


Q ss_pred             CccccCCC-CceEEEEEeccchhhhhccCCcccccccCcccccccCCCCCcccCCCCchhHHHHHHHHHhChHHHHHHHH
Q psy14299        162 PHKMLGAP-LQCSILLIKEKGLLHQANATAATYLFQQDKFYDVSFDTGDKSVQCGRKVDAFKLWLMWKARGNLGFRHFVD  240 (448)
Q Consensus       162 ~hK~l~~P-~g~G~l~vr~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~g~~~~i~  240 (448)
                      ++|+++.| ..+|+++.++ .+..........+                 +      .......                
T Consensus       208 ~sK~~g~~G~r~G~~~~~~-~~~~~~~~~~~~~-----------------~------~~~~~~~----------------  247 (346)
T TIGR01141       208 LSKAFGLAGLRIGYAIANA-EIIDALNKVRAPF-----------------N------LSRLAQA----------------  247 (346)
T ss_pred             hhHhhhchhhhceeeecCH-HHHHHHHhccCCC-----------------C------CCHHHHH----------------
Confidence            89999755 2478887743 3433322111000                 0      0000000                


Q ss_pred             HhhhhccCCCccchhhhhhhhhhhhhhhhhhhhhhhccccccccccCCCCCccccccchhhHHHHHHHHHhcCccHHHHH
Q psy14299        241 NAVDCSRGSMTFSTLLCFDLQGLLHQANATAATYLFQQDKFYDVSFDTGDKSVQCGRKVDAFKLWLMWKARGNLGFRHFV  320 (448)
Q Consensus       241 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~  320 (448)
                                                                                    .+...++..  .+++++.
T Consensus       248 --------------------------------------------------------------~~~~~l~~~--~~~~~~~  263 (346)
T TIGR01141       248 --------------------------------------------------------------AAIAALRDD--DFIEKTV  263 (346)
T ss_pred             --------------------------------------------------------------HHHHHhCCH--HHHHHHH
Confidence                                                                          000111111  1355667


Q ss_pred             HHHHHHHHHHHHHhhcCCCeEEeccCCceeeEEEEeeccCCCccccchhhhhhhhhhhHHHHHHHHhCCcEEEEeeecCC
Q psy14299        321 DNAVDCSRYFLSQISQRPGFRLVIPEFQCTNICFWFIPVSLRDKVEDETWWSTLSKVAPRIKEKLVLGGTLMIGYQPLQH  400 (448)
Q Consensus       321 ~~~~~l~~~~~~~L~~~pg~~l~~~~~~~~~v~f~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~L~~~g~~~~~~~~~~g  400 (448)
                      ++..++++++.+.|+++||+++.  ++....+.+.+ +.  .               ..++.+.|.++| +.+.+....+
T Consensus       264 ~~~~~~~~~l~~~L~~~~g~~~~--~~~g~~~~~~~-~~--~---------------~~~~~~~L~~~g-I~v~~g~~f~  322 (346)
T TIGR01141       264 EEINAERERLYDGLKKLPGLEVY--PSDANFVLIRF-PR--D---------------ADALFEALLEKG-IIVRDLNSYP  322 (346)
T ss_pred             HHHHHHHHHHHHHHHhcCCCEEC--CCcCCEEEEec-CC--C---------------HHHHHHHHHHCC-eEEEeCCCcC
Confidence            77888899999999999999864  33444444432 11  1               137888999998 5555543321


Q ss_pred             cccccEEEEEecCCCCCCHHHHHHHHHHHH
Q psy14299        401 RNLHNFFRLVTTCHPASSRQDMDYAIDQIE  430 (448)
Q Consensus       401 ~~~~~~lRis~~~~~~~t~edid~l~~al~  430 (448)
                      .. ++++|+|+  +   +++|+++++++|+
T Consensus       323 ~~-~~~iRls~--~---~~~~i~~~~~~l~  346 (346)
T TIGR01141       323 GL-PNCLRITV--G---TREENDRFLAALR  346 (346)
T ss_pred             CC-CCeEEEec--C---CHHHHHHHHHHhC
Confidence            11 47899998  3   7899999998873

Histidinol-phosphate aminotransferase is a pyridoxal-phosphate dependent enzyme.

>PRK05367 glycine dehydrogenase; Provisional

Probab=99.80  E-value=1.5e-17  Score=184.60  Aligned_cols=288  Identities=10%  Similarity=0.080  Sum_probs=186.0

Q ss_pred             EEEeCcHHHHHHHHHHHHHHhcCCcccccCCCCCCCeEEEecCCCchHHHHHH----HHhCCCCCcEEEEecCCCCCcCH
Q psy14299          5 PFLLPGGSISNMYSICLARYRLDPDTKRKGLSHLPPLCMFTSEDSHYSMLKAA----HWLGIGMDNVIRVKTNERGQMIC   80 (448)
Q Consensus         5 g~~t~ggT~an~~al~~a~~~~~~~~~~~G~~~~~~~~Vl~~~~~H~s~~~~~----~~~g~~~~~v~~v~~~~~g~id~   80 (448)
                      .-++.++|.+.-..+++.+..       .    ..++.|++++..|++....+    +..|+   +++.++.+.+  ++ 
T Consensus       141 aSl~d~aTAa~ea~~~a~~~~-------~----~~~~~vlv~~~~hP~~~~v~~t~a~~~G~---ev~~~~~~~d--~~-  203 (954)
T PRK05367        141 ASLLDEATAAAEAMALAKRVS-------K----SKSNRFFVDDDVHPQTLDVLRTRAEPLGI---EVVVGDAAKA--LD-  203 (954)
T ss_pred             ccccccHHHHHHHHHHhhhhc-------c----CCCCEEEEcCccCHHHHHHHHHHHHhCCC---EEEEecCccC--CC-
Confidence            456777787643333322221       0    01357999999999987664    44566   7888887542  11 


Q ss_pred             HHHHHHHHHhhhcCCCcEEEEEeccCCccccccCHHHHHHHHHHcCCEEEEecccccccccccchhhhhcCCCCccEEEE
Q psy14299         81 SFLEQTIQTSLAEKKIPLFVNATAGTTVLGAFDPLDEIATVCEKYDLWMHVDACWGGSLIFSEKYSFVLKGINRANSVSW  160 (448)
Q Consensus        81 e~Le~~l~~~~~~~~~~~lVv~~~~~t~tG~~~~l~~I~~ia~~~g~~l~VD~A~~~~~~~~~~~~~~~~~~~~aD~~~~  160 (448)
                              .     ..+ ..++++.++.+|.+.|+++|+++||++|++++||+.+.+.....+.     ..+ ++|+++.
T Consensus       204 --------~-----~~~-~~vlvq~p~~~G~i~d~~~i~~~ah~~Gal~~vda~~~Al~~l~~p-----ge~-GaDi~vg  263 (954)
T PRK05367        204 --------H-----DDV-FGVLLQYPGTSGEVRDYTALIAAAHARGALVAVAADLLALTLLTPP-----GEM-GADIAVG  263 (954)
T ss_pred             --------c-----ccE-EEEEEecCCCCeeeccHHHHHHHHHHcCCEEEEEehhhhccCCCCh-----hhc-CCCEEEe
Confidence                    1     123 4445555677999999999999999999999999966433332221     112 5899999


Q ss_pred             CCccc-----cCCCCceEEEEEeccchhhhhccCCcccccccCcccccccCCCCCcccCCCCchhHHHHHHHHHhChHHH
Q psy14299        161 NPHKM-----LGAPLQCSILLIKEKGLLHQANATAATYLFQQDKFYDVSFDTGDKSVQCGRKVDAFKLWLMWKARGNLGF  235 (448)
Q Consensus       161 s~hK~-----l~~P~g~G~l~vr~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~g~  235 (448)
                      ++|||     +|+| ++|+|+++++ +....   .+..+.. +....+...+ .+.+                       
T Consensus       264 s~qkfg~P~g~GGP-~aGflavr~~-~~r~l---pgrivG~-s~d~~g~~~~-~lal-----------------------  313 (954)
T PRK05367        264 SAQRFGVPMGFGGP-HAAYFAVRDA-YKRSM---PGRIVGV-SVDAAGNPAL-RLAL-----------------------  313 (954)
T ss_pred             eCcccCCCCCCCCC-CEEEEEECHH-HHhhC---CCCeeee-ecccCCCccc-cccc-----------------------
Confidence            99999     5666 5999999875 33222   1222221 1000000000 0000                       


Q ss_pred             HHHHHHhhhhccCCCccchhhhhhhhhhhhhhhhhhhhhhhccccccccccCCCCCccccccchhhHHHHHHHHHhcCcc
Q psy14299        236 RHFVDNAVDCSRGSMTFSTLLCFDLQGLLHQANATAATYLFQQDKFYDVSFDTGDKSVQCGRKVDAFKLWLMWKARGNLG  315 (448)
Q Consensus       236 ~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G  315 (448)
                       +.-+++++..++.+++|+.             +                            ...++.....+.+.+.+|
T Consensus       314 -qtReqhiRrekaTsNict~-------------q----------------------------aL~a~~a~~y~~~~g~~G  351 (954)
T PRK05367        314 -QTREQHIRREKATSNICTA-------------Q----------------------------VLLAVMASMYAVYHGPEG  351 (954)
T ss_pred             -ccccccccccccccccchH-------------H----------------------------HHHHHHHHHHHHHHhhhh
Confidence             0112334445666666661             1                            112334445578899999


Q ss_pred             HHHHHHHHHHHHHHHHHHhhcCCCeEEeccCCceeeEEEEeeccCCCccccchhhhhhhhhhhHHHHHHHHhCCcEEEEe
Q psy14299        316 FRHFVDNAVDCSRYFLSQISQRPGFRLVIPEFQCTNICFWFIPVSLRDKVEDETWWSTLSKVAPRIKEKLVLGGTLMIGY  395 (448)
Q Consensus       316 ~~~~~~~~~~l~~~~~~~L~~~pg~~l~~~~~~~~~v~f~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~L~~~g~~~~~~  395 (448)
                      ++++.++.+.+++|++++|++ +|+++. .++.+.++.|.+ +.  +               ..++.++|.++|+. +..
T Consensus       352 l~~Ia~~~~~la~~l~~~L~~-~G~~~~-~~~~f~~~~~~~-~~--~---------------~~~i~~~l~~~gi~-~~~  410 (954)
T PRK05367        352 LKAIARRVHRLAAILAAGLRA-LGLEVV-HDSFFDTLTVEV-GG--D---------------AAAVLARALAAGIN-LRR  410 (954)
T ss_pred             HHHHHHHHHHHHHHHHHHHHh-cCcccC-CCCCCCeEEEeC-CC--C---------------HHHHHHHHHHCCce-ecc
Confidence            999999999999999999988 599987 666677777763 11  1               23789999999943 321


Q ss_pred             eecCCcccccEEEEEecCCCCCCHHHHHHHHHHHH
Q psy14299        396 QPLQHRNLHNFFRLVTTCHPASSRQDMDYAIDQIE  430 (448)
Q Consensus       396 ~~~~g~~~~~~lRis~~~~~~~t~edid~l~~al~  430 (448)
                        . ..   +.+|+|+  |.++|++|||+|+++|.
T Consensus       411 --~-~~---~~l~is~--~e~~t~~did~l~~~l~  437 (954)
T PRK05367        411 --V-DD---DHVGISL--DETTTREDLAALLAVFG  437 (954)
T ss_pred             --c-cC---CEEEEEe--cccCCHHHHHHHHHHHc
Confidence              1 11   5799999  89999999999999997

>PRK06108 aspartate aminotransferase; Provisional

Probab=99.79  E-value=2.2e-17  Score=168.07  Aligned_cols=285  Identities=13%  Similarity=0.077  Sum_probs=182.5

Q ss_pred             cEEEeCcHHHHHHHHHHHHHHhcCCcccccCCCCCCCeEEEecCCCchHHHHHHHHhCCCCCcEEEEecCC---CCCcCH
Q psy14299          4 KPFLLPGGSISNMYSICLARYRLDPDTKRKGLSHLPPLCMFTSEDSHYSMLKAAHWLGIGMDNVIRVKTNE---RGQMIC   80 (448)
Q Consensus         4 ~g~~t~ggT~an~~al~~a~~~~~~~~~~~G~~~~~~~~Vl~~~~~H~s~~~~~~~~g~~~~~v~~v~~~~---~g~id~   80 (448)
                      ..++|+|+++++..++....+              +++.|+++...|..+...++..|.   +++.+|.+.   ++.+|+
T Consensus        86 ~i~~t~g~~~al~~~~~~l~~--------------~gd~vl~~~p~y~~~~~~~~~~g~---~~~~v~~~~~~~~~~~d~  148 (382)
T PRK06108         86 RIAVTSSGVQALMLAAQALVG--------------PGDEVVAVTPLWPNLVAAPKILGA---RVVCVPLDFGGGGWTLDL  148 (382)
T ss_pred             eEEEeCChHHHHHHHHHHhcC--------------CCCEEEEeCCCccchHHHHHHCCC---EEEEeeCCCCCCCccCCH
Confidence            467899999998877766543              566788898999999999998888   788999864   346999


Q ss_pred             HHHHHHHHHhhhcCCCcEEEEEeccCCcccccc---CHHHHHHHHHHcCCEEEEeccccccccc-ccchhh--hhcCCCC
Q psy14299         81 SFLEQTIQTSLAEKKIPLFVNATAGTTVLGAFD---PLDEIATVCEKYDLWMHVDACWGGSLIF-SEKYSF--VLKGINR  154 (448)
Q Consensus        81 e~Le~~l~~~~~~~~~~~lVv~~~~~t~tG~~~---~l~~I~~ia~~~g~~l~VD~A~~~~~~~-~~~~~~--~~~~~~~  154 (448)
                      +++++.+.+      +++++++++++|+||.+.   ++++|.++|+++|+++++|++|+..... ......  .+.....
T Consensus       149 ~~l~~~~~~------~~~~i~l~~p~NPtG~~~~~~~~~~l~~~~~~~~~~li~De~y~~~~~~~~~~~~~~~~~~~~~~  222 (382)
T PRK06108        149 DRLLAAITP------RTRALFINSPNNPTGWTASRDDLRAILAHCRRHGLWIVADEVYERLYYAPGGRAPSFLDIAEPDD  222 (382)
T ss_pred             HHHHHhcCc------cceEEEEECCCCCCCcccCHHHHHHHHHHHHHCCcEEEEehhhhhhccCCCCCCCCHhhcCCCcC
Confidence            999998853      478899999999999775   4788999999999999999998866542 111000  0111111


Q ss_pred             ccEEEECCccccCCC-CceEEEEEeccchhhhhccCCcccccccCcccccccCCCCCcccCCCCchhHHHHHHHHHhChH
Q psy14299        155 ANSVSWNPHKMLGAP-LQCSILLIKEKGLLHQANATAATYLFQQDKFYDVSFDTGDKSVQCGRKVDAFKLWLMWKARGNL  233 (448)
Q Consensus       155 aD~~~~s~hK~l~~P-~g~G~l~vr~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~  233 (448)
                      -.+++.+++|.++.| ..+|+++.++ ++....... ..+...                 ....                
T Consensus       223 ~~i~~~S~SK~~g~~G~RiG~~~~~~-~~~~~~~~~-~~~~~~-----------------~~~~----------------  267 (382)
T PRK06108        223 RIIFVNSFSKNWAMTGWRLGWLVAPP-ALGQVLEKL-IEYNTS-----------------CVAQ----------------  267 (382)
T ss_pred             CEEEEeechhhccCcccceeeeeCCH-HHHHHHHHH-HHhccc-----------------CCCh----------------
Confidence            247778999988654 3578887744 333322110 000000                 0000                


Q ss_pred             HHHHHHHHhhhhccCCCccchhhhhhhhhhhhhhhhhhhhhhhccccccccccCCCCCccccccchhhHHHHHHHHHhcC
Q psy14299        234 GFRHFVDNAVDCSRGSMTFSTLLCFDLQGLLHQANATAATYLFQQDKFYDVSFDTGDKSVQCGRKVDAFKLWLMWKARGN  313 (448)
Q Consensus       234 g~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  313 (448)
                                                                                       +.+..+..+++. +.
T Consensus       268 -----------------------------------------------------------------~~q~a~~~~l~~-~~  281 (382)
T PRK06108        268 -----------------------------------------------------------------FVQRAAVAALDE-GE  281 (382)
T ss_pred             -----------------------------------------------------------------HHHHHHHHHHhC-Ch
Confidence                                                                             000001111111 12


Q ss_pred             ccHHHHHHHHHHHHHHHHHHhhcCCCeEEeccCCceeeEEEEeeccCCCccccchhhhhhhhhhhHHHHHHHHh-CCcEE
Q psy14299        314 LGFRHFVDNAVDCSRYFLSQISQRPGFRLVIPEFQCTNICFWFIPVSLRDKVEDETWWSTLSKVAPRIKEKLVL-GGTLM  392 (448)
Q Consensus       314 ~G~~~~~~~~~~l~~~~~~~L~~~pg~~l~~~~~~~~~v~f~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~L~~-~g~~~  392 (448)
                      ..++++.++..++++++.+.|+++||+++.  +|..+.+.+.-.+...+               ..++.+.|++ +| +.
T Consensus       282 ~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~--~p~~g~~~~~~l~~~~~---------------~~~~~~~ll~~~g-V~  343 (382)
T PRK06108        282 DFVAELVARLRRSRDHLVDALRALPGVEVA--KPDGAMYAFFRIPGVTD---------------SLALAKRLVDEAG-LG  343 (382)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhCCCCccc--CCCeeEEEEEeCCCCCC---------------HHHHHHHHHHhCC-EE
Confidence            234566777888899999999998898875  45556555432222111               2367788764 57 55


Q ss_pred             EEeeecCCcccccEEEEEecCCCCCCHHHHHHHHHHHHHHHH
Q psy14299        393 IGYQPLQHRNLHNFFRLVTTCHPASSRQDMDYAIDQIELRGA  434 (448)
Q Consensus       393 ~~~~~~~g~~~~~~lRis~~~~~~~t~edid~l~~al~~~~~  434 (448)
                      +.++...+....+++|+|+.  .  ++++++..++.|+++.+
T Consensus       344 v~pg~~f~~~~~~~~Ris~~--~--~~~~l~~~l~~l~~~l~  381 (382)
T PRK06108        344 LAPGTAFGPGGEGFLRWCFA--R--DPARLDEAVERLRRFLA  381 (382)
T ss_pred             EeCchhhCCCCCCEEEEEec--C--CHHHHHHHHHHHHHHHh
Confidence            55443222222479999994  3  78889988888877653

>PLN03227 serine palmitoyltransferase-like protein; Provisional

Probab=99.78  E-value=1.2e-16  Score=163.29  Aligned_cols=142  Identities=15%  Similarity=0.169  Sum_probs=105.5

Q ss_pred             cEEEeCcHHHHHHHHHHHHHHhcCCcccccCCCCCCCeEEEecCCCchHHHHHHHHhCCCCCcEEEEecCCCCCcCHHHH
Q psy14299          4 KPFLLPGGSISNMYSICLARYRLDPDTKRKGLSHLPPLCMFTSEDSHYSMLKAAHWLGIGMDNVIRVKTNERGQMICSFL   83 (448)
Q Consensus         4 ~g~~t~ggT~an~~al~~a~~~~~~~~~~~G~~~~~~~~Vl~~~~~H~s~~~~~~~~g~~~~~v~~v~~~~~g~id~e~L   83 (448)
                      ..++.++|+++|+.++.+..+              +++.|++++..|.|+..++.+.+.   ++..++++     |++++
T Consensus        60 ~al~~~sG~~a~~~~i~~l~~--------------~GD~Vl~~~~~h~s~~~~~~l~~~---~~~~~~~~-----d~~~l  117 (392)
T PLN03227         60 SAILYSDGASTTSSTVAAFAK--------------RGDLLVVDRGVNEALLVGVSLSRA---NVRWFRHN-----DMKDL  117 (392)
T ss_pred             cEEEecCcHHHHHHHHHHhCC--------------CCCEEEEeccccHHHHHHHHHcCC---eEEEeCCC-----CHHHH
Confidence            568889999998877666432              778899999999999999887776   67777765     56666


Q ss_pred             HHHHHHhhh--------cCCCcEEEEEeccCCccccccCHHHHHHHHHHcCCEEEEeccccccccccc-chhhh---hcC
Q psy14299         84 EQTIQTSLA--------EKKIPLFVNATAGTTVLGAFDPLDEIATVCEKYDLWMHVDACWGGSLIFSE-KYSFV---LKG  151 (448)
Q Consensus        84 e~~l~~~~~--------~~~~~~lVv~~~~~t~tG~~~~l~~I~~ia~~~g~~l~VD~A~~~~~~~~~-~~~~~---~~~  151 (448)
                      ++.++....        ..+++++|++..+.+++|.+.|+++|.++|++||+++++|++|+.+..--. .....   +..
T Consensus       118 ~~~~~~i~~~~~a~~~~~~~~t~~vi~E~v~~~~G~i~~l~~i~~l~~~~g~~livDe~~~~g~~g~~G~g~~~~~g~~p  197 (392)
T PLN03227        118 RRVLEQVRAQDVALKRKPTDQRRFLVVEGLYKNTGTLAPLKELVALKEEFHYRLILDESFSFGTLGKSGRGSLEHAGLKP  197 (392)
T ss_pred             HHHHHHhhhhccccccccCCCcEEEEEcCCcCCCCcccCHHHHHHHHHHcCCEEEEECcccccccCCCCCcHHHHcCCCC
Confidence            665543211        123578999999999999999999999999999999999999986543110 00000   111


Q ss_pred             CCCccEEEECCccccC
Q psy14299        152 INRANSVSWNPHKMLG  167 (448)
Q Consensus       152 ~~~aD~~~~s~hK~l~  167 (448)
                      ...+|+++.+.+|.++
T Consensus       198 ~~~~Div~~slsk~~g  213 (392)
T PLN03227        198 MVHAEIVTFSLENAFG  213 (392)
T ss_pred             CCCceEEEeechhhhh
Confidence            2357999999999876

>PLN02271 serine hydroxymethyltransferase

Probab=99.78  E-value=2.2e-17  Score=170.61  Aligned_cols=300  Identities=13%  Similarity=0.082  Sum_probs=192.1

Q ss_pred             eCcHHHHHHHHHHHHHHhcCCcccccCCCCCCCeEEEecCCCchHHH---------HHHHHhCCCCCcEEEEe--cC-CC
Q psy14299          8 LPGGSISNMYSICLARYRLDPDTKRKGLSHLPPLCMFTSEDSHYSML---------KAAHWLGIGMDNVIRVK--TN-ER   75 (448)
Q Consensus         8 t~ggT~an~~al~~a~~~~~~~~~~~G~~~~~~~~Vl~~~~~H~s~~---------~~~~~~g~~~~~v~~v~--~~-~~   75 (448)
                      ..+|+.||+.++.+..+              |++.|+..+..|-...         +.+...|+   .+..++  ++ ++
T Consensus       220 p~SGs~AN~aV~~ALl~--------------PGD~IL~ldl~~GGHlshg~~~~~g~~vs~sG~---~~~~vpY~~d~~~  282 (586)
T PLN02271        220 PYSCTSANFAVYTGLLL--------------PGDRIMGLDSPSGGHMSHGYYTPGGKKVSGASI---FFESLPYKVNPQT  282 (586)
T ss_pred             eccHHHHHHHHHHHhcC--------------CCCEEEEecCCCCCchhcccccccccccccccc---eEEEEEccccccc
Confidence            45999999998877643              7788887655544322         22234454   455555  54 57


Q ss_pred             CCcCHHHHHHHHHHhhhcCCCcEEEEEeccCCccccccCHHHHHHHHHHcCCEEEEecccccccccccchhhhhcCCCCc
Q psy14299         76 GQMICSFLEQTIQTSLAEKKIPLFVNATAGTTVLGAFDPLDEIATVCEKYDLWMHVDACWGGSLIFSEKYSFVLKGINRA  155 (448)
Q Consensus        76 g~id~e~Le~~l~~~~~~~~~~~lVv~~~~~t~tG~~~~l~~I~~ia~~~g~~l~VD~A~~~~~~~~~~~~~~~~~~~~a  155 (448)
                      |.+|++++++....     .+|++|++.+..++  ...|+++|.++|+++|++++||+||.+|.+..+..+.-   +..+
T Consensus       283 g~IDyd~lek~a~~-----~rPKLII~g~Sayp--r~~D~~~i~eIAdevGA~LmvD~AH~aGLIa~g~~~sP---~~~a  352 (586)
T PLN02271        283 GYIDYDKLEEKALD-----FRPKILICGGSSYP--REWDYARFRQIADKCGAVLMCDMAHISGLVAAKECVNP---FDYC  352 (586)
T ss_pred             CccCHHHHHHHhhh-----cCCeEEEECchhcc--CcCCHHHHHHHHHHcCCEEEEECcccccccccCcCCCC---CcCC
Confidence            89999999996544     37999999777776  77999999999999999999999999999866544322   2358


Q ss_pred             cEEEECCccccCCCCceEEEEEeccchhhhhccCCcccccccCcccccccCCCCCcccCCCCchhHHHHHHHHHhChHHH
Q psy14299        156 NSVSWNPHKMLGAPLQCSILLIKEKGLLHQANATAATYLFQQDKFYDVSFDTGDKSVQCGRKVDAFKLWLMWKARGNLGF  235 (448)
Q Consensus       156 D~~~~s~hK~l~~P~g~G~l~vr~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~g~  235 (448)
                      |++++++||||.+|.| |+++++++. ...   ..+.......              ...                ...+
T Consensus       353 Dvvt~TTHKtLrGPrG-G~I~~r~~~-~~~---~~g~~gs~s~--------------~~~----------------~~d~  397 (586)
T PLN02271        353 DIVTSTTHKSLRGPRG-GIIFYRKGP-KLR---KQGMLLSHGD--------------DNS----------------HYDF  397 (586)
T ss_pred             cEEEeCCcccCCCCCc-eEEEecccc-ccc---ccCCcccccc--------------ccc----------------cHHH
Confidence            9999999999999999 777776542 111   1111110000              000                0001


Q ss_pred             HHHHHHhhhhccCCCccchhhhhhhhhhhhhhhhhhhhhhhccccccccccCCCCCcccccc-chhhHHHHHHHHHhcCc
Q psy14299        236 RHFVDNAVDCSRGSMTFSTLLCFDLQGLLHQANATAATYLFQQDKFYDVSFDTGDKSVQCGR-KVDAFKLWLMWKARGNL  314 (448)
Q Consensus       236 ~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~  314 (448)
                      .+.|+..+-                                              -.++.++ .--+.++++++++....
T Consensus       398 ~~kI~~aVf----------------------------------------------PglqgGphn~~IAalAvalkea~~~  431 (586)
T PLN02271        398 EEKINFAVF----------------------------------------------PSLQGGPHNNHIAALAIALKQVATP  431 (586)
T ss_pred             HHHhhcccC----------------------------------------------CccccChhHHHHHHHHHHHHHHhCh
Confidence            111111000                                              0112222 11245566778877777


Q ss_pred             cHHHHHHHHHHHHHHHHHHhhcCCCeEEeccCCceeeEEEEeeccCCCccccchhhhhhhhhhhHHHHHHHHhCCcEEEE
Q psy14299        315 GFRHFVDNAVDCSRYFLSQISQRPGFRLVIPEFQCTNICFWFIPVSLRDKVEDETWWSTLSKVAPRIKEKLVLGGTLMIG  394 (448)
Q Consensus       315 G~~~~~~~~~~l~~~~~~~L~~~pg~~l~~~~~~~~~v~f~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~L~~~g~~~~~  394 (448)
                      .+++..++..++++.|.+.|.+. ||+++....+.+.+.+.+.+.++++               ....+.|.+.| |.+.
T Consensus       432 efk~Ya~QVv~NAkaLA~~L~~~-G~~vv~ggTdnHlvLvDl~~~g~~G---------------~~ae~~Le~~~-I~~N  494 (586)
T PLN02271        432 EYKAYMQQVKKNAQALASALLRR-KCRLVTGGTDNHLLLWDLTTLGLTG---------------KNYEKVCEMCH-ITLN  494 (586)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHC-CCeEeeCCCCcceeeecCcccCCCH---------------HHHHHHHHHcC-eEec
Confidence            78889999999999999999998 9999843345677777665544432               24444555556 5554


Q ss_pred             eeecCCc---ccccEEEEEecCCCCC----CHHHHHHHHHHHHHHHH
Q psy14299        395 YQPLQHR---NLHNFFRLVTTCHPAS----SRQDMDYAIDQIELRGA  434 (448)
Q Consensus       395 ~~~~~g~---~~~~~lRis~~~~~~~----t~edid~l~~al~~~~~  434 (448)
                      -..+.+.   ..++.+|++.  ...|    .++|++++.+.|.++.+
T Consensus       495 kn~iP~d~~~~~psGiRiGT--~alT~rG~~e~d~~~iA~~i~~~~~  539 (586)
T PLN02271        495 KTAIFGDNGTISPGGVRIGT--PAMTSRGCLESDFETIADFLLRAAQ  539 (586)
T ss_pred             cccCCCCCCCCCCCcccccC--HHHHhcCCCcHHHHHHHHHHHHHHh
Confidence            3222221   1236799987  3444    45899998888888765

>PRK05764 aspartate aminotransferase; Provisional

Probab=99.78  E-value=1.7e-16  Score=162.25  Aligned_cols=288  Identities=13%  Similarity=0.063  Sum_probs=182.8

Q ss_pred             EEEeCcHHHHHHHHHHHHHHhcCCcccccCCCCCCCeEEEecCCCchHHHHHHHHhCCCCCcEEEEecCC--CCCcCHHH
Q psy14299          5 PFLLPGGSISNMYSICLARYRLDPDTKRKGLSHLPPLCMFTSEDSHYSMLKAAHWLGIGMDNVIRVKTNE--RGQMICSF   82 (448)
Q Consensus         5 g~~t~ggT~an~~al~~a~~~~~~~~~~~G~~~~~~~~Vl~~~~~H~s~~~~~~~~g~~~~~v~~v~~~~--~g~id~e~   82 (448)
                      .++|+|+++++..++.+...              +++.|+++...|..+..+++..|.   +++.++.++  ++.+|+++
T Consensus        94 i~~~~g~~~a~~~~~~~~~~--------------~gd~vl~~~p~y~~~~~~~~~~g~---~~~~~~~~~~~~~~~d~~~  156 (393)
T PRK05764         94 VIVTTGAKQALYNAFMALLD--------------PGDEVIIPAPYWVSYPEMVKLAGG---VPVFVPTGEENGFKLTVEQ  156 (393)
T ss_pred             EEEeCCcHHHHHHHHHHhcC--------------CCCEEEecCCCCcchHHHHHHcCC---EEEEEecCcccCCcCCHHH
Confidence            68999999998877766543              456788999999999999998888   788888864  45789999


Q ss_pred             HHHHHHHhhhcCCCcEEEEEeccCCccccccC---HHHHHHHHHHcCCEEEEecccccccccccc---hhhhhcCCCCcc
Q psy14299         83 LEQTIQTSLAEKKIPLFVNATAGTTVLGAFDP---LDEIATVCEKYDLWMHVDACWGGSLIFSEK---YSFVLKGINRAN  156 (448)
Q Consensus        83 Le~~l~~~~~~~~~~~lVv~~~~~t~tG~~~~---l~~I~~ia~~~g~~l~VD~A~~~~~~~~~~---~~~~~~~~~~aD  156 (448)
                      +++.+++      ++++|++++++|++|.+.+   +++|.++|++||+++++|.+|+........   ......+....+
T Consensus       157 l~~~l~~------~~~~v~~~~p~NPtG~~~~~~~~~~l~~~a~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~~~~  230 (393)
T PRK05764        157 LEAAITP------KTKALILNSPSNPTGAVYSPEELEAIADVAVEHDIWVLSDEIYEKLVYDGAEFTSIASLSPELRDRT  230 (393)
T ss_pred             HHHhhCc------cceEEEEECCCCCCCcccCHHHHHHHHHHHHHCCcEEEEeccccceeeCCCCcccHHHcCCCCcCCE
Confidence            9998853      4678999999999998754   889999999999999999998754431111   111001112346


Q ss_pred             EEEECCccccCCCC-ceEEEEEeccchhhhhccCCcccccccCcccccccCCCCCcccCCCCchhHHHHHHHHHhChHHH
Q psy14299        157 SVSWNPHKMLGAPL-QCSILLIKEKGLLHQANATAATYLFQQDKFYDVSFDTGDKSVQCGRKVDAFKLWLMWKARGNLGF  235 (448)
Q Consensus       157 ~~~~s~hK~l~~P~-g~G~l~vr~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~g~  235 (448)
                      ++..++.|.++.|. .+|+++. ++++..........+...                     ...+..+.+.+.      
T Consensus       231 i~~~s~SK~~~~~G~RiG~i~~-~~~~~~~~~~~~~~~~~~---------------------~~~~~q~~~~~~------  282 (393)
T PRK05764        231 ITVNGFSKAYAMTGWRLGYAAG-PKELIKAMSKLQSHSTSN---------------------PTSIAQYAAVAA------  282 (393)
T ss_pred             EEEecCcccccCccceeEEEec-CHHHHHHHHHHHhhcccC---------------------CChHHHHHHHHH------
Confidence            77889999987663 2677664 333333321110000000                     000111111111      


Q ss_pred             HHHHHHhhhhccCCCccchhhhhhhhhhhhhhhhhhhhhhhccccccccccCCCCCccccccchhhHHHHHHHHHhcCcc
Q psy14299        236 RHFVDNAVDCSRGSMTFSTLLCFDLQGLLHQANATAATYLFQQDKFYDVSFDTGDKSVQCGRKVDAFKLWLMWKARGNLG  315 (448)
Q Consensus       236 ~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G  315 (448)
                                                                                              ++. ..+.
T Consensus       283 ------------------------------------------------------------------------l~~-~~~~  289 (393)
T PRK05764        283 ------------------------------------------------------------------------LNG-PQDE  289 (393)
T ss_pred             ------------------------------------------------------------------------HcC-ChHH
Confidence                                                                                    110 1123


Q ss_pred             HHHHHHHHHHHHHHHHHHhhcCCCeEEeccCCceeeEEEEeeccCCCccccchhhhhhhhhhhHHHHHHHHh-CCcEEEE
Q psy14299        316 FRHFVDNAVDCSRYFLSQISQRPGFRLVIPEFQCTNICFWFIPVSLRDKVEDETWWSTLSKVAPRIKEKLVL-GGTLMIG  394 (448)
Q Consensus       316 ~~~~~~~~~~l~~~~~~~L~~~pg~~l~~~~~~~~~v~f~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~L~~-~g~~~~~  394 (448)
                      +++..++..++++++.+.|+++||+++.  ++..+.+.+...+......          .....++.+.|.+ .| +.+.
T Consensus       290 ~~~~~~~~~~~~~~l~~~L~~~~g~~~~--~~~g~~~~~~~~~~~~~~~----------~~~~~~~~~~l~~~~g-i~v~  356 (393)
T PRK05764        290 VEEMRQAFEERRDLMVDGLNEIPGLECP--KPEGAFYVFPNVSKLLGKS----------ITDSLEFAEALLEEAG-VAVV  356 (393)
T ss_pred             HHHHHHHHHHHHHHHHHHHhhCCCCccc--CCCcceEEEEecccccccc----------cCCHHHHHHHHHHhCC-EEEc
Confidence            4455666777888899999999898875  3454444442222221100          0012367777765 57 5554


Q ss_pred             eeecCCcccccEEEEEecCCCCCCHHHHHHHHHHHHHHHHH
Q psy14299        395 YQPLQHRNLHNFFRLVTTCHPASSRQDMDYAIDQIELRGAE  435 (448)
Q Consensus       395 ~~~~~g~~~~~~lRis~~~~~~~t~edid~l~~al~~~~~~  435 (448)
                      ++...+.  ++++|++++    .++++++.+++.|.++.++
T Consensus       357 ~g~~f~~--~~~vRis~~----~~~~~~~~~i~~l~~~~~~  391 (393)
T PRK05764        357 PGIAFGA--PGYVRLSYA----TSLEDLEEGLERIERFLES  391 (393)
T ss_pred             cccccCC--CCEEEEEec----CCHHHHHHHHHHHHHHHHh
Confidence            4433332  479999995    2699999999999988764

>PRK06225 aspartate aminotransferase; Provisional

Probab=99.78  E-value=6.5e-17  Score=164.74  Aligned_cols=150  Identities=12%  Similarity=0.101  Sum_probs=109.4

Q ss_pred             cEEEeCcHHHHHHHHHHHHHHhcCCcccccCCCCCCCeEEEecCCCchHHHHHHHHhCCCCCcEEEEecCC---CCCcCH
Q psy14299          4 KPFLLPGGSISNMYSICLARYRLDPDTKRKGLSHLPPLCMFTSEDSHYSMLKAAHWLGIGMDNVIRVKTNE---RGQMIC   80 (448)
Q Consensus         4 ~g~~t~ggT~an~~al~~a~~~~~~~~~~~G~~~~~~~~Vl~~~~~H~s~~~~~~~~g~~~~~v~~v~~~~---~g~id~   80 (448)
                      .+++|+|+|+++..++.....              +++.|++++..|......++..|.   +++.++.+.   ++.+|+
T Consensus        85 ~v~~~~g~t~al~~~~~~~~~--------------~gd~vl~~~p~y~~~~~~~~~~g~---~~~~v~~~~~~~~~~~d~  147 (380)
T PRK06225         85 EALITAGATESLYLVMRAFLS--------------PGDNAVTPDPGYLIIDNFASRFGA---EVIEVPIYSEECNYKLTP  147 (380)
T ss_pred             cEEEeCCHHHHHHHHHHHhcC--------------CCCEEEEcCCCCcchHHHHHHhCc---eEEeeccccccCCccCCH
Confidence            589999999998888776543              456688888888877788888888   788888642   458999


Q ss_pred             HHHHHHHHHhhhcCCCcEEEEEeccCCcccccc---CHHHHHHHHHHcCCEEEEecccccccccccchhhhhcCCCCccE
Q psy14299         81 SFLEQTIQTSLAEKKIPLFVNATAGTTVLGAFD---PLDEIATVCEKYDLWMHVDACWGGSLIFSEKYSFVLKGINRANS  157 (448)
Q Consensus        81 e~Le~~l~~~~~~~~~~~lVv~~~~~t~tG~~~---~l~~I~~ia~~~g~~l~VD~A~~~~~~~~~~~~~~~~~~~~aD~  157 (448)
                      +++++.+.+      +++++++++++|++|.+.   ++++|+++|++||+++++|++++......... ....  ....+
T Consensus       148 ~~l~~~~~~------~~~~v~l~~p~NptG~~~~~~~~~~i~~~a~~~~~~ii~De~y~~~~~~~~~~-~~~~--~~~~i  218 (380)
T PRK06225        148 ELVKENMDE------NTRLIYLIDPLNPLGSSYTEEEIKEFAEIARDNDAFLLHDCTYRDFAREHTLA-AEYA--PEHTV  218 (380)
T ss_pred             HHHHhhcCC------CceEEEEeCCCCCCCcCCCHHHHHHHHHHHHHCCcEEEEehhHHHHhccCCch-hhcC--CCCEE
Confidence            999998854      477888899999999865   49999999999999999999975321110000 0011  12346


Q ss_pred             EEECCccccCCCC-ceEEEEEec
Q psy14299        158 VSWNPHKMLGAPL-QCSILLIKE  179 (448)
Q Consensus       158 ~~~s~hK~l~~P~-g~G~l~vr~  179 (448)
                      ++.+++|+++.|. .+|+++.++
T Consensus       219 ~~~s~SK~~g~~G~RiG~i~~~~  241 (380)
T PRK06225        219 TSYSFSKIFGMAGLRIGAVVATP  241 (380)
T ss_pred             EEeechhhcCCccceeEEEecCH
Confidence            6678899996442 368887754

>PLN02414 glycine dehydrogenase (decarboxylating)

Probab=99.78  E-value=7.8e-17  Score=178.24  Aligned_cols=290  Identities=11%  Similarity=0.034  Sum_probs=188.6

Q ss_pred             cEEEeCcHHHHHHHHHHHHHHhcCCcccccCCCCCCCeEEEecCCCchHHHHHHHH----hCCCCCcEEEEecCCCCCcC
Q psy14299          4 KPFLLPGGSISNMYSICLARYRLDPDTKRKGLSHLPPLCMFTSEDSHYSMLKAAHW----LGIGMDNVIRVKTNERGQMI   79 (448)
Q Consensus         4 ~g~~t~ggT~an~~al~~a~~~~~~~~~~~G~~~~~~~~Vl~~~~~H~s~~~~~~~----~g~~~~~v~~v~~~~~g~id   79 (448)
                      ..-++.++|.+.-.++++.+..       .    .+++.|++++..|++....++.    .|+   +++.++.+..   +
T Consensus       167 naSL~d~aTAaaea~~~a~~~~-------~----g~~~~VlVs~~~hP~~~~v~~t~a~~~Gi---eV~~v~~~~~---~  229 (993)
T PLN02414        167 NASLLDEGTAAAEAMAMCNNIL-------K----GKKKKFLIASNCHPQTIDVCQTRADGLGL---EVVVADEKDF---D  229 (993)
T ss_pred             hEeecCChHHHHHHHHHHHhcc-------c----CCCCEEEEcCccCHhHHHHHHHhhhhcCC---EEEEecchhh---c
Confidence            4567888887744333332221       1    1346799999999998777653    355   6888876421   1


Q ss_pred             HHHHHHHHHHhhhcCCCcEEEEEeccCCccccccCHHHHHHHHHHcCCEEEEecccccccccccchhhhhcCCCCccEEE
Q psy14299         80 CSFLEQTIQTSLAEKKIPLFVNATAGTTVLGAFDPLDEIATVCEKYDLWMHVDACWGGSLIFSEKYSFVLKGINRANSVS  159 (448)
Q Consensus        80 ~e~Le~~l~~~~~~~~~~~lVv~~~~~t~tG~~~~l~~I~~ia~~~g~~l~VD~A~~~~~~~~~~~~~~~~~~~~aD~~~  159 (448)
                            ...      ... ..++++..+.+|.+.|+++|+++||++|++++| +|+..+...+..    ...+ ++|+++
T Consensus       230 ------~~~------~~v-~~vlvq~P~~~G~v~dv~~I~~~ah~~GaL~iV-aad~lal~~l~~----pge~-GADi~v  290 (993)
T PLN02414        230 ------YSS------GDV-CGVLVQYPATDGEVLDYAEFVKNAHANGVKVVM-ATDLLALTMLKP----PGEW-GADIVV  290 (993)
T ss_pred             ------ccc------Cce-EEEEEecCCCCeEEcCHHHHHHHHHHcCCEEEE-EECHHHhcCCCC----Hhhc-cCcEEE
Confidence                  111      112 344466666799999999999999999999999 888877765532    1122 589999


Q ss_pred             ECCcccc-----CCCCceEEEEEeccchhhhhccCCcc-cccccCcccccccCCCCCcccCCCCchhHHHHHHHHHhChH
Q psy14299        160 WNPHKML-----GAPLQCSILLIKEKGLLHQANATAAT-YLFQQDKFYDVSFDTGDKSVQCGRKVDAFKLWLMWKARGNL  233 (448)
Q Consensus       160 ~s~hK~l-----~~P~g~G~l~vr~~~~~~~~~~~~~~-y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~  233 (448)
                      .++|||+     ++|. +|+|+++++ +..    ..|+ .+.. +....            +++...+    +++     
T Consensus       291 gsgqKwg~P~G~GGP~-aGflavr~~-~~r----~~PgriVG~-s~d~~------------g~~~~~l----~Lq-----  342 (993)
T PLN02414        291 GSAQRFGVPMGYGGPH-AAFLATSQE-YKR----LMPGRIIGV-SVDSS------------GKPALRM----AMQ-----  342 (993)
T ss_pred             ECCCccccCCCCCCCC-eeEEEECHH-HHh----hCCCcccCc-ccCCC------------CCccccc----ccc-----
Confidence            9999998     5555 899999875 222    1222 2322 11000            0010000    000     


Q ss_pred             HHHHHHHHhhhhccCCCccchhhhhhhhhhhhhhhhhhhhhhhccccccccccCCCCCccccccchhhHHHHHHHHHhcC
Q psy14299        234 GFRHFVDNAVDCSRGSMTFSTLLCFDLQGLLHQANATAATYLFQQDKFYDVSFDTGDKSVQCGRKVDAFKLWLMWKARGN  313 (448)
Q Consensus       234 g~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  313 (448)
                          .=+++++..++.+++|+..     .+.                                    +......+.+.+.
T Consensus       343 ----tReqhiRrEkaTsNict~q-----aL~------------------------------------A~la~~y~~~~g~  377 (993)
T PLN02414        343 ----TREQHIRRDKATSNICTAQ-----ALL------------------------------------ANMAAMYAVYHGP  377 (993)
T ss_pred             ----cccchhhhcccccchhHHH-----HHH------------------------------------HHHHHHHHHHhcc
Confidence                0123344556666666611     111                                    1111123568899


Q ss_pred             ccHHHHHHHHHHHHHHHHHHhhcCCCeEEeccCCceeeEEEEeeccCCCccccchhhhhhhhhhhHHHHHHHHhCCcEEE
Q psy14299        314 LGFRHFVDNAVDCSRYFLSQISQRPGFRLVIPEFQCTNICFWFIPVSLRDKVEDETWWSTLSKVAPRIKEKLVLGGTLMI  393 (448)
Q Consensus       314 ~G~~~~~~~~~~l~~~~~~~L~~~pg~~l~~~~~~~~~v~f~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~L~~~g~~~~  393 (448)
                      +|++++.++.+.++.+++++|.+. |+++. .++.+.+++|.+.    .               ..++.++|.++|+ .+
T Consensus       378 ~Gl~~Ia~ri~~la~~l~~~L~~~-G~~~~-~~~~f~~vt~~~~----~---------------~~~v~~~L~~~gI-~l  435 (993)
T PLN02414        378 EGLKTIAQRVHGLAGVFAAGLKKL-GFQVQ-SLPFFDTVKVKCS----D---------------ADAIADAAAKVGI-NL  435 (993)
T ss_pred             ccHHHHHHHHHHHHHHHHHHHhhc-CCccC-CCCCcCeEEEecC----C---------------HHHHHHHHHHCCC-ee
Confidence            999999999999999999999885 89987 6677888888642    1               1378899999994 33


Q ss_pred             EeeecCCcccccEEEEEecCCCCCCHHHHHHHHHHHHHH
Q psy14299        394 GYQPLQHRNLHNFFRLVTTCHPASSRQDMDYAIDQIELR  432 (448)
Q Consensus       394 ~~~~~~g~~~~~~lRis~~~~~~~t~edid~l~~al~~~  432 (448)
                      ....  +    +.+|+|+  |++||++|||+|+++|...
T Consensus       436 ~~~~--~----~~lrvs~--~e~~T~edId~L~~~l~~~  466 (993)
T PLN02414        436 RVVD--A----NTVTVSF--DETTTLEDVDKLFKVFAGG  466 (993)
T ss_pred             EEec--C----CeEEEEe--eccCCHHHHHHHHHHHccc
Confidence            3221  2    5799999  8999999999999999743

>PRK05957 aspartate aminotransferase; Provisional

Probab=99.77  E-value=1.7e-16  Score=162.19  Aligned_cols=153  Identities=16%  Similarity=0.155  Sum_probs=111.8

Q ss_pred             cEEEeCcHHHHHHHHHHHHHHhcCCcccccCCCCCCCeEEEecCCCchHHHHHHHHhCCCCCcEEEEecCCCCCcCHHHH
Q psy14299          4 KPFLLPGGSISNMYSICLARYRLDPDTKRKGLSHLPPLCMFTSEDSHYSMLKAAHWLGIGMDNVIRVKTNERGQMICSFL   83 (448)
Q Consensus         4 ~g~~t~ggT~an~~al~~a~~~~~~~~~~~G~~~~~~~~Vl~~~~~H~s~~~~~~~~g~~~~~v~~v~~~~~g~id~e~L   83 (448)
                      ..++|+|+++++..++.....              +++.|+++...+......++..|.   +++.++.+.++.+|++++
T Consensus        91 ~i~~t~G~~~~l~~~~~~~~~--------------~gd~Vlv~~P~y~~~~~~~~~~g~---~~~~v~~~~~~~~d~~~l  153 (389)
T PRK05957         91 AIVVTAGSNMAFMNAILAITD--------------PGDEIILNTPYYFNHEMAITMAGC---QPILVPTDDNYQLQPEAI  153 (389)
T ss_pred             eEEEeCChHHHHHHHHHHhcC--------------CCCEEEEeCCCCcCHHHHHHhcCC---EEEEeecCCCCCcCHHHH
Confidence            378899999998777665433              567788888888777777777788   788999887889999999


Q ss_pred             HHHHHHhhhcCCCcEEEEEeccCCccccccC---HHHHHHHHHHcCCEEEEecccccccccccc-hhh-hhcCCCCccEE
Q psy14299         84 EQTIQTSLAEKKIPLFVNATAGTTVLGAFDP---LDEIATVCEKYDLWMHVDACWGGSLIFSEK-YSF-VLKGINRANSV  158 (448)
Q Consensus        84 e~~l~~~~~~~~~~~lVv~~~~~t~tG~~~~---l~~I~~ia~~~g~~l~VD~A~~~~~~~~~~-~~~-~~~~~~~aD~~  158 (448)
                      ++.+++      ++++|++++++|+||.+.|   +++|+++|++||+++++|++|+-....... ... .......--++
T Consensus       154 ~~~i~~------~~klv~~~~p~NPtG~~~~~~~~~~i~~~a~~~~~~li~De~y~~~~~~~~~~~~~~~~~~~~~~~i~  227 (389)
T PRK05957        154 EQAITP------KTRAIVTISPNNPTGVVYPEALLRAVNQICAEHGIYHISDEAYEYFTYDGVKHFSPGSIPGSGNHTIS  227 (389)
T ss_pred             HHhcCc------CceEEEEeCCCCCCCcCcCHHHHHHHHHHHHHcCcEEEEeccchhccCCCCCccChhhCCCccCcEEE
Confidence            998854      4789999999999999887   899999999999999999998754432111 010 00011112255


Q ss_pred             EECCccccCCCC-ceEEEEEec
Q psy14299        159 SWNPHKMLGAPL-QCSILLIKE  179 (448)
Q Consensus       159 ~~s~hK~l~~P~-g~G~l~vr~  179 (448)
                      +.+..|.++.|. =+|++++.+
T Consensus       228 ~~S~SK~~g~~GlRiG~~~~~~  249 (389)
T PRK05957        228 LYSLSKAYGFASWRIGYMVIPI  249 (389)
T ss_pred             EecchhhccCccceeEEEecCH
Confidence            677889875442 277777644

>TIGR03588 PseC UDP-4-keto-6-deoxy-N-acetylglucosamine 4-aminotransferase

Probab=99.76  E-value=2.3e-16  Score=160.80  Aligned_cols=154  Identities=14%  Similarity=0.130  Sum_probs=115.3

Q ss_pred             EEEeCcHHHHHHHHHHHHHHhcCCcccccCCCCCCCeEEEecCCCchHHHHHHHHhCCCCCcEEEEecCC-CCCcCHHHH
Q psy14299          5 PFLLPGGSISNMYSICLARYRLDPDTKRKGLSHLPPLCMFTSEDSHYSMLKAAHWLGIGMDNVIRVKTNE-RGQMICSFL   83 (448)
Q Consensus         5 g~~t~ggT~an~~al~~a~~~~~~~~~~~G~~~~~~~~Vl~~~~~H~s~~~~~~~~g~~~~~v~~v~~~~-~g~id~e~L   83 (448)
                      .++++|||+|+.+++.+..-             .+++.|+++..+|.+...++...|.   +++.++.++ ++.+|++++
T Consensus        47 ~v~~~sgt~al~~~l~al~~-------------~~Gd~Viv~~~~~~~~~~~~~~~G~---~~~~~~~~~~~~~~d~~~l  110 (380)
T TIGR03588        47 AVAFNSATSALHIACLALGV-------------GPGDRVWTTPITFVATANCALYCGA---KVDFVDIDPDTGNIDEDAL  110 (380)
T ss_pred             EEEEcCHHHHHHHHHHHcCC-------------CCCCEEEeCCcchHHHHHHHHHcCC---EEEEEecCCCcCCcCHHHH
Confidence            57788999998888766422             2677899999999999999998898   788998864 678999999


Q ss_pred             HHHHHHhhhcCCCcEEEEEeccCCccccccCHHHHHHHHHHcCCEEEEecccccccccccchhhhhcCCCCccEEEECCc
Q psy14299         84 EQTIQTSLAEKKIPLFVNATAGTTVLGAFDPLDEIATVCEKYDLWMHVDACWGGSLIFSEKYSFVLKGINRANSVSWNPH  163 (448)
Q Consensus        84 e~~l~~~~~~~~~~~lVv~~~~~t~tG~~~~l~~I~~ia~~~g~~l~VD~A~~~~~~~~~~~~~~~~~~~~aD~~~~s~h  163 (448)
                      ++.+++.  ..+++++|++++   .+|...|+++|.++|++||+++++|++|+.+... +....  ......|+.++|+|
T Consensus       111 ~~~i~~~--~~~~t~~v~~~~---~~G~~~~~~~i~~l~~~~~~~lI~D~a~a~g~~~-~~~~~--g~~~~~d~~~~S~~  182 (380)
T TIGR03588       111 EKKLAAA--KGKLPKAIVPVD---FAGKSVDMQAIAALAKKHGLKIIEDASHALGAEY-GGKPV--GNCRYADATVFSFH  182 (380)
T ss_pred             HHHhhcc--cCCCceEEEEeC---CCCccCCHHHHHHHHHHcCCEEEEECCCcccCcc-CCEeC--CCccccceEEEecC
Confidence            9999732  112577877665   4799999999999999999999999999988652 21111  11013599999998


Q ss_pred             --cccCCCCceEEEEEeccchh
Q psy14299        164 --KMLGAPLQCSILLIKEKGLL  183 (448)
Q Consensus       164 --K~l~~P~g~G~l~vr~~~~~  183 (448)
                        |++.++. .|+++..++.+.
T Consensus       183 ~~K~~~~~~-GG~v~~~~~~~~  203 (380)
T TIGR03588       183 PVKIITTAE-GGAVTTNDEELA  203 (380)
T ss_pred             CCCcccccC-ceEEEECCHHHH
Confidence              8997764 444555555443

This family of enzymes are aminotransferases of the pfam01041 family involved in the biosynthesis of pseudaminic acid. They convert UDP-4-keto-6-deoxy-N-acetylglucosamine into UDP-4-amino-4,6-dideoxy-N-acetylgalactose. Pseudaminic acid has a role in surface polysaccharide in Pseudomonas as well as in the modification of flagellin in Campylobacter and Helicobacter species.

>TIGR01365 serC_2 phosphoserine aminotransferase, Methanosarcina type

Probab=99.76  E-value=4.5e-17  Score=164.37  Aligned_cols=302  Identities=10%  Similarity=0.010  Sum_probs=185.6

Q ss_pred             EEEeCcHHHHHHHHHHHHHHhcCCcccccCCCCCCCe-EEEecCCCchHHHHHHHHhCCCCCcEEEEecCCCCCcCHHHH
Q psy14299          5 PFLLPGGSISNMYSICLARYRLDPDTKRKGLSHLPPL-CMFTSEDSHYSMLKAAHWLGIGMDNVIRVKTNERGQMICSFL   83 (448)
Q Consensus         5 g~~t~ggT~an~~al~~a~~~~~~~~~~~G~~~~~~~-~Vl~~~~~H~s~~~~~~~~g~~~~~v~~v~~~~~g~id~e~L   83 (448)
                      .+++.|||.+.=.++......             +++ +++++...+.-..+.|+..|+.  ++..+..+++..+|++++
T Consensus        61 ~~l~GsGT~a~Eaa~~nl~~~-------------~g~~vLv~g~FG~r~~~eia~~~g~~--~v~~l~~~~g~~~~~~~v  125 (374)
T TIGR01365        61 GIVPASDTGAVEMALWSMLGC-------------RGVDVLAWESFGKGWVTDVTKQLKLP--DVRVLEAEYGKLPDLKKV  125 (374)
T ss_pred             EEECCchHHHHHHHHHHcCCC-------------CCCeEEEECHHHHHHHHHHHHhcCCC--CcEEEcCCCCCCCCHHHc
Confidence            355777777765555544321             333 3443322222222888888883  266777777889999999


Q ss_pred             HHHHHHhhhcCCCcEEEEEeccCCccccccCHHHHHHHHHHcCCEEEEecccccccccccchhhhhcCCCCccEEEECCc
Q psy14299         84 EQTIQTSLAEKKIPLFVNATAGTTVLGAFDPLDEIATVCEKYDLWMHVDACWGGSLIFSEKYSFVLKGINRANSVSWNPH  163 (448)
Q Consensus        84 e~~l~~~~~~~~~~~lVv~~~~~t~tG~~~~l~~I~~ia~~~g~~l~VD~A~~~~~~~~~~~~~~~~~~~~aD~~~~s~h  163 (448)
                      +.   +        +.|.++|++|+||+.+|+++|++.+  +++.++||+..+.+..+++..        .+|++..+++
T Consensus       126 e~---~--------~~v~~vhnETSTGv~npv~~i~~~~--~~~lliVDavSs~g~~~l~~d--------~iDv~~tgsQ  184 (374)
T TIGR01365       126 DF---K--------NDVVFTWNGTTSGVRVPNGDFIPAD--REGLTICDATSAAFAQDLDYH--------KLDVVTFSWQ  184 (374)
T ss_pred             CC---C--------CCEEEecCCCchheecccccccccc--CCCcEEEEccchhcCCCCChh--------HCcEEEEech
Confidence            72   1        1267999999999999998776433  589999999988888766532        2799999999


Q ss_pred             cccCCCCceEEEEEeccchhhhhccCCcccccccCcccccccCCCCCcccCCCCchhHHHHHHHHHhChHHHHHHHHHhh
Q psy14299        164 KMLGAPLQCSILLIKEKGLLHQANATAATYLFQQDKFYDVSFDTGDKSVQCGRKVDAFKLWLMWKARGNLGFRHFVDNAV  243 (448)
Q Consensus       164 K~l~~P~g~G~l~vr~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~g~~~~i~~~~  243 (448)
                      |+|++|+|.+++.++++.+.. ..... .|.....        +.++....  .     +|            ..+    
T Consensus       185 K~L~~ppGls~v~vs~~Al~~-~~~~~-~y~~~~~--------~~~~~~~~--~-----~~------------~~~----  231 (374)
T TIGR01365       185 KVLGGEGAHGMLILSPRAVAR-LESYT-PAWPLPK--------IFRLTKGG--K-----LN------------KKI----  231 (374)
T ss_pred             hccCCCCceEEEEECHHHHHH-HhhcC-CCCCChh--------hhcccccc--c-----hh------------hhh----
Confidence            999999999999998876533 22111 1221100        00000000  0     00            000    


Q ss_pred             hhccCCCccchhhhhhhhhhhhhhhhhhhhhhhccccccccccCCCCCcccccc---chhhHHHHHHHHHhcCc-cHHHH
Q psy14299        244 DCSRGSMTFSTLLCFDLQGLLHQANATAATYLFQQDKFYDVSFDTGDKSVQCGR---KVDAFKLWLMWKARGNL-GFRHF  319 (448)
Q Consensus       244 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~-G~~~~  319 (448)
                                                                     +..+...   .....++..+++++.++ |++.+
T Consensus       232 -----------------------------------------------~~~~t~~TP~v~~l~a~~~~l~~i~~egGle~~  264 (374)
T TIGR01365       232 -----------------------------------------------FEGSTINTPSMLCVEDWLDALKWAESIGGLKPL  264 (374)
T ss_pred             -----------------------------------------------hcCCCCCChHHHHHHHHHHHHHHHHHccCHHHH
Confidence                                                           0000111   22233444556666665 89999


Q ss_pred             HHHHHHHHHHHHHHhhcCCC-eEEeccC-C--cee-eEEEEeeccCCCccccchhhhhhhhhhhHHHHHHHHhCCcEEEE
Q psy14299        320 VDNAVDCSRYFLSQISQRPG-FRLVIPE-F--QCT-NICFWFIPVSLRDKVEDETWWSTLSKVAPRIKEKLVLGGTLMIG  394 (448)
Q Consensus       320 ~~~~~~l~~~~~~~L~~~pg-~~l~~~~-~--~~~-~v~f~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~L~~~g~~~~~  394 (448)
                      .+++.++++.+++.++++ | ++++ .+ +  +++ ++++.+.++++++...+..     ..+..++++.|.++| +.+.
T Consensus       265 ~~Rh~~~a~~l~~~l~~l-g~l~~~-~~~~~~rS~tvt~v~~~~~~~~~~~~~~~-----~~~~~~~~~~l~~~g-i~i~  336 (374)
T TIGR01365       265 IARADDNLAVLEAFVAKN-NWIHFL-AETPEIRSNTSVCLKVVDPAIDALDEDAQ-----ADFAKELISTLEKEG-VAYD  336 (374)
T ss_pred             HHHHHHHHHHHHHHHHHC-CCcccC-CCChhhcCCCeEEEEeCCccccccccchh-----hHHHHHHHHHHHHCC-EEEe
Confidence            999999999999999999 6 8877 42 2  333 3445443332310000000     001247889999998 4444


Q ss_pred             eeecCCcccccEEEEEecCCCCCCHHHHHHHHHHHHHHHH
Q psy14299        395 YQPLQHRNLHNFFRLVTTCHPASSRQDMDYAIDQIELRGA  434 (448)
Q Consensus       395 ~~~~~g~~~~~~lRis~~~~~~~t~edid~l~~al~~~~~  434 (448)
                      ++...-+  +..+||+++|  ..+.+|++.|++.|.=+-+
T Consensus       337 ~G~~~~~--~~~fRIg~~G--~i~~~di~~l~~~l~~~~~  372 (374)
T TIGR01365       337 IGSYRDA--PSGLRIWCGA--TVEKSDLECLCPWLDWAFA  372 (374)
T ss_pred             ccccccC--CCceEEecCC--cCCHHHHHHHHHHHHHHHh
Confidence            3322211  3689999985  7899999999999975543

This model represents a variant form of the serine biosynthesis enzyme phosphoserine aminotransferase, as found in a small number of distantly related species, including Caulobacter crescentus, Mesorhizobium loti, and the archaeon Methanosarcina barkeri.

>PRK15399 lysine decarboxylase LdcC; Provisional

Probab=99.75  E-value=2.4e-16  Score=168.39  Aligned_cols=155  Identities=22%  Similarity=0.205  Sum_probs=120.3

Q ss_pred             cEEEeCcHHHHHHHHHHHHHHhcCCcccccCCCCCCCeEEEecCCCchHHHHHHHHhCCCCCcEEEEecCC--C---CCc
Q psy14299          4 KPFLLPGGSISNMYSICLARYRLDPDTKRKGLSHLPPLCMFTSEDSHYSMLKAAHWLGIGMDNVIRVKTNE--R---GQM   78 (448)
Q Consensus         4 ~g~~t~ggT~an~~al~~a~~~~~~~~~~~G~~~~~~~~Vl~~~~~H~s~~~~~~~~g~~~~~v~~v~~~~--~---g~i   78 (448)
                      +-+.|+|+|.+|..++.++..              +++.|++++++|.|+..++.+.|+   ..+++++..  .   |.+
T Consensus       213 tyfvvNGTS~~n~av~~a~~~--------------~Gd~VLvdRN~HKSv~~aLilsga---~PVYl~P~~n~~Gi~g~I  275 (713)
T PRK15399        213 SYIVTNGTSTSNKIVGMYAAP--------------AGSTLLIDRNCHKSLAHLLMMSDV---VPIWLKPTRNALGILGGI  275 (713)
T ss_pred             EEEEeCChHHHHHHHHHHhcC--------------CCCEEEeecccHHHHHHHHHHcCC---eeEEecccccccCCcCCC
Confidence            346677778889888887665              678899999999999999999999   566766543  2   356


Q ss_pred             CH-----HHHHHHHHHhhhcCCCcEEEEEeccCCccccccCHHHHHHHHHHcCCEE-EEecccccccccccchhh--hhc
Q psy14299         79 IC-----SFLEQTIQTSLAEKKIPLFVNATAGTTVLGAFDPLDEIATVCEKYDLWM-HVDACWGGSLIFSEKYSF--VLK  150 (448)
Q Consensus        79 d~-----e~Le~~l~~~~~~~~~~~lVv~~~~~t~tG~~~~l~~I~~ia~~~g~~l-~VD~A~~~~~~~~~~~~~--~~~  150 (448)
                      ++     +.++++|++..+. ++|+.++++.+|+ .|.+.|+++|.++|   |+.+ |||+|||++..+.+..+.  .+.
T Consensus       276 ~~~~~~~e~I~~~i~~~p~~-~~p~~vvit~pTY-dGi~yd~~~I~~~~---g~~~ilvDEAhgah~~F~p~~~~~sam~  350 (713)
T PRK15399        276 PRREFTRDSIEEKVAATTQA-QWPVHAVITNSTY-DGLLYNTDWIKQTL---DVPSIHFDSAWVPYTHFHPIYQGKSGMS  350 (713)
T ss_pred             ChhhccHHHHHHHHHhCCCc-CCceEEEEECCCC-CceeeCHHHHHHHh---CCCEEEEeccchhhhhcCcccCCcChhh
Confidence            66     9999999874332 4678899999866 99999999999999   6766 799999998876553331  121


Q ss_pred             CCCCccEE---EECCccccCCCCceEEEEEecc
Q psy14299        151 GINRANSV---SWNPHKMLGAPLQCSILLIKEK  180 (448)
Q Consensus       151 ~~~~aD~~---~~s~hK~l~~P~g~G~l~vr~~  180 (448)
                      +...+|.+   +.|.||.|.+..+++.+.++..
T Consensus       351 ~~~~aD~~i~~tQStHKtL~alTQaS~iHvk~~  383 (713)
T PRK15399        351 GERVPGKVIFETQSTHKMLAAFSQASLIHIKGE  383 (713)
T ss_pred             CCCCCCeeeeeeeehhccccccchheeeeecCC
Confidence            21246777   9999999999999999999653

>PRK06290 aspartate aminotransferase; Provisional

Probab=99.75  E-value=5e-16  Score=159.79  Aligned_cols=293  Identities=10%  Similarity=0.011  Sum_probs=189.2

Q ss_pred             cEEEeCcHHHHHHHHHHHHHHhcCCcccccCCCCCCCeEEEecCCCchHHHHHHHHhCCCCCcEEEEecCCC--CCcCHH
Q psy14299          4 KPFLLPGGSISNMYSICLARYRLDPDTKRKGLSHLPPLCMFTSEDSHYSMLKAAHWLGIGMDNVIRVKTNER--GQMICS   81 (448)
Q Consensus         4 ~g~~t~ggT~an~~al~~a~~~~~~~~~~~G~~~~~~~~Vl~~~~~H~s~~~~~~~~g~~~~~v~~v~~~~~--g~id~e   81 (448)
                      ..++|+|+++++..++.+...              +++.|+++...+..+...++..|.   +++.+|.+++  +.+|++
T Consensus       108 ~I~it~Gs~~al~~~~~~~~~--------------~gd~Vlv~~P~y~~~~~~~~~~g~---~v~~v~~~~~~~~~~d~~  170 (410)
T PRK06290        108 EVIHSIGSKPALAMLPSCFIN--------------PGDVTLMTVPGYPVTGTHTKYYGG---EVYNLPLLEENNFLPDLD  170 (410)
T ss_pred             eEEEccCHHHHHHHHHHHhCC--------------CCCEEEEeCCCCccHHHHHHHcCC---EEEEEecCCCcCCcCCHH
Confidence            478999999998777665443              567788898999888899999888   7999998753  567999


Q ss_pred             HHHHHHHHhhhcCCCcEEEEEeccCCccccccC---HHHHHHHHHHcCCEEEEecccccccccccchhh-hhcCCCCccE
Q psy14299         82 FLEQTIQTSLAEKKIPLFVNATAGTTVLGAFDP---LDEIATVCEKYDLWMHVDACWGGSLIFSEKYSF-VLKGINRANS  157 (448)
Q Consensus        82 ~Le~~l~~~~~~~~~~~lVv~~~~~t~tG~~~~---l~~I~~ia~~~g~~l~VD~A~~~~~~~~~~~~~-~~~~~~~aD~  157 (448)
                      ++++.+.+      ++++|+++.++|+||.+.+   +++|.++|++||+++++|.+|+........... ...+....++
T Consensus       171 ~l~~~~~~------~~k~i~l~nP~NPTG~v~s~e~l~~l~~la~~~~~~iI~DEaY~~~~~~~~~~s~~~~~~~~~~~I  244 (410)
T PRK06290        171 SIPKDIKE------KAKLLYLNYPNNPTGAVATKEFYEEVVDFAKENNIIVVQDAAYAALTFDGKPLSFLSVPGAKEVGV  244 (410)
T ss_pred             HHHHhhcc------cceEEEEECCCCCCCcCCCHHHHHHHHHHHHHcCeEEEEecchhhceeCCCCcChhcCCCccccEE
Confidence            99988853      4789999999999999888   578888899999999999998865431110000 0111112457


Q ss_pred             EEECCccccCCCC-ceEEEEEeccchhhhhccCCcccccccCcccccccCCCCCcccCCCCchhHHHHHHHHHhChHHHH
Q psy14299        158 VSWNPHKMLGAPL-QCSILLIKEKGLLHQANATAATYLFQQDKFYDVSFDTGDKSVQCGRKVDAFKLWLMWKARGNLGFR  236 (448)
Q Consensus       158 ~~~s~hK~l~~P~-g~G~l~vr~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~g~~  236 (448)
                      ++.|+.|.++.|. -+|+++. ++.+..........+...                                        
T Consensus       245 ~i~SfSK~~g~~GlRiG~ii~-~~~l~~~l~~~~~~~~~~----------------------------------------  283 (410)
T PRK06290        245 EIHSLSKAYNMTGWRLAFVVG-NELIVKAFATVKDNNDSG----------------------------------------  283 (410)
T ss_pred             EEeechhhcCCchhheEeEEe-CHHHHHHHHHHHhccccC----------------------------------------
Confidence            8889999986553 2566554 433332221100000000                                        


Q ss_pred             HHHHHhhhhccCCCccchhhhhhhhhhhhhhhhhhhhhhhccccccccccCCCCCccccccchhhHHHHHHHHHhcCccH
Q psy14299        237 HFVDNAVDCSRGSMTFSTLLCFDLQGLLHQANATAATYLFQQDKFYDVSFDTGDKSVQCGRKVDAFKLWLMWKARGNLGF  316 (448)
Q Consensus       237 ~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~  316 (448)
                                                                                 ...+.+..+..+++.  .+.+
T Consensus       284 -----------------------------------------------------------~~~~~q~aa~~~l~~--~~~~  302 (410)
T PRK06290        284 -----------------------------------------------------------QFIAIQKAGIYALDH--PEIT  302 (410)
T ss_pred             -----------------------------------------------------------CcHHHHHHHHHHhhC--cHHH
Confidence                                                                       000000111111111  1224


Q ss_pred             HHHHHHHHHHHHHHHHHhhcCCCeEEeccCCceeeEEEEeeccCCCccccchhhhhhhhhhhHHHHHHHHhCCcEEEEee
Q psy14299        317 RHFVDNAVDCSRYFLSQISQRPGFRLVIPEFQCTNICFWFIPVSLRDKVEDETWWSTLSKVAPRIKEKLVLGGTLMIGYQ  396 (448)
Q Consensus       317 ~~~~~~~~~l~~~~~~~L~~~pg~~l~~~~~~~~~v~f~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~L~~~g~~~~~~~  396 (448)
                      +++.++..+.++++.+.|+++ |+++.  ++..+.+.|.-.|++..... .       .....++.+.|+++|.+++.+.
T Consensus       303 ~~~~~~~~~~~~~l~~~L~~~-g~~~~--~p~g~f~l~v~lp~~~~~~~-~-------~~~~~~~~~~Ll~~~~v~~~p~  371 (410)
T PRK06290        303 EKIREKYSRRLDKLVKILNEV-GFKAE--MPGGTFYLYVKAPKGTKSGI-K-------FENAEEFSQYLIKEKLISTVPW  371 (410)
T ss_pred             HHHHHHHHHHHHHHHHHHHhC-CCeec--CCCeeeEEEEECCCccccCC-C-------CCCHHHHHHHHHHhCCEEEECC
Confidence            556677778889999999997 88764  45666655532233221000 0       0012378899998876665543


Q ss_pred             ecCCcccccEEEEEecCCCCCCHHHHHHHHHHHHHHHHHhH
Q psy14299        397 PLQHRNLHNFFRLVTTCHPASSRQDMDYAIDQIELRGAEVD  437 (448)
Q Consensus       397 ~~~g~~~~~~lRis~~~~~~~t~edid~l~~al~~~~~~~~  437 (448)
                      ...    ++++|++++ .+..++|+.++++++|++...+++
T Consensus       372 ~~~----~~~lRi~~~-~~~~~~~~~~~~~~~l~~~~~~~~  407 (410)
T PRK06290        372 DDA----GHFLRFSVT-FEAKDEEEEDRILEEIKRRLSDVE  407 (410)
T ss_pred             ccc----cCeEEEEEE-cccccccchhHHHHHHHHHHhhcc
Confidence            222    369999998 578899999999999999988765

>PRK07309 aromatic amino acid aminotransferase; Validated

Probab=99.75  E-value=1.7e-15  Score=154.93  Aligned_cols=160  Identities=12%  Similarity=0.075  Sum_probs=115.5

Q ss_pred             cEEEeCcHHHHHHHHHHHHHHhcCCcccccCCCCCCCeEEEecCCCchHHHHHHHHhCCCCCcEEEEecCCC-CCcCHHH
Q psy14299          4 KPFLLPGGSISNMYSICLARYRLDPDTKRKGLSHLPPLCMFTSEDSHYSMLKAAHWLGIGMDNVIRVKTNER-GQMICSF   82 (448)
Q Consensus         4 ~g~~t~ggT~an~~al~~a~~~~~~~~~~~G~~~~~~~~Vl~~~~~H~s~~~~~~~~g~~~~~v~~v~~~~~-g~id~e~   82 (448)
                      ..++|+|+|+++.+++.....              +++.|+++...|..+...++..|.   +++.++.+++ +.+|++.
T Consensus        93 ~i~it~G~~~al~~~~~~~~~--------------~gd~vl~~~p~y~~~~~~~~~~g~---~~~~~~~~~~~~~~d~~~  155 (391)
T PRK07309         93 EILVTIGATEALSASLTAILE--------------PGDKVLLPAPAYPGYEPIVNLVGA---EIVEIDTTENDFVLTPEM  155 (391)
T ss_pred             cEEEeCChHHHHHHHHHHhcC--------------CCCEEEEeCCCCcchHHHHHHcCC---EEEEEecCCcCCcCCHHH
Confidence            478999999998887766533              566788888899999999998888   7888988654 5799999


Q ss_pred             HHHHHHHhhhcCCCcEEEEEeccCCccccccC---HHHHHHHHHHcCCEEEEecccccccccccchhhhhcCCCCccEEE
Q psy14299         83 LEQTIQTSLAEKKIPLFVNATAGTTVLGAFDP---LDEIATVCEKYDLWMHVDACWGGSLIFSEKYSFVLKGINRANSVS  159 (448)
Q Consensus        83 Le~~l~~~~~~~~~~~lVv~~~~~t~tG~~~~---l~~I~~ia~~~g~~l~VD~A~~~~~~~~~~~~~~~~~~~~aD~~~  159 (448)
                      |++++++.   ..++++|++++++|+||...+   +++|+++|++||+++++|++++..................--+++
T Consensus       156 l~~~~~~~---~~~~~~i~l~~P~NPtG~~~s~~~~~~l~~~~~~~~~~ii~D~~y~~~~~~~~~~~~~~~~~~~~~i~~  232 (391)
T PRK07309        156 LEKAILEQ---GDKLKAVILNYPANPTGVTYSREQIKALADVLKKYDIFVISDEVYSELTYTGEPHVSIAEYLPDQTILI  232 (391)
T ss_pred             HHHHhhcc---CCCeEEEEEECCCCCCCcCcCHHHHHHHHHHHHHcCcEEEEEccccceeeCCCCCCCHHHhccCCEEEE
Confidence            99998642   225789999999999998755   899999999999999999998865431111001010011112677


Q ss_pred             ECCccccCCCC-ceEEEEEeccchhh
Q psy14299        160 WNPHKMLGAPL-QCSILLIKEKGLLH  184 (448)
Q Consensus       160 ~s~hK~l~~P~-g~G~l~vr~~~~~~  184 (448)
                      .|.+|.++.|. -+|+++.. ++++.
T Consensus       233 ~S~SK~~g~~GlRvG~~v~~-~~~~~  257 (391)
T PRK07309        233 NGLSKSHAMTGWRIGLIFAP-AEFTA  257 (391)
T ss_pred             ecChhhccCccceeEEEEeC-HHHHH
Confidence            79999987552 25666654 34443

>PRK07682 hypothetical protein; Validated

Probab=99.75  E-value=2.6e-16  Score=160.21  Aligned_cols=286  Identities=15%  Similarity=0.093  Sum_probs=184.3

Q ss_pred             cEEEeCcHHHHHHHHHHHHHHhcCCcccccCCCCCCCeEEEecCCCchHHHHHHHHhCCCCCcEEEEecCC--CCCcCHH
Q psy14299          4 KPFLLPGGSISNMYSICLARYRLDPDTKRKGLSHLPPLCMFTSEDSHYSMLKAAHWLGIGMDNVIRVKTNE--RGQMICS   81 (448)
Q Consensus         4 ~g~~t~ggT~an~~al~~a~~~~~~~~~~~G~~~~~~~~Vl~~~~~H~s~~~~~~~~g~~~~~v~~v~~~~--~g~id~e   81 (448)
                      ..++|+|+++++.+++.+..+              +++.|++++..|..+...++..|.   +++.++.+.  ++.+|++
T Consensus        83 ~i~~t~G~~~al~~~~~~l~~--------------~gd~vl~~~p~y~~~~~~~~~~g~---~~~~~~~~~~~~~~~d~~  145 (378)
T PRK07682         83 EIIVTVGASQALDVAMRAIIN--------------PGDEVLIVEPSFVSYAPLVTLAGG---VPVPVATTLENEFKVQPA  145 (378)
T ss_pred             cEEEeCChHHHHHHHHHHhCC--------------CCCEEEEeCCCchhhHHHHHHcCC---EEEEeecCCccCCCCCHH
Confidence            488999999998887765543              567788999999999888888887   677888753  5689999


Q ss_pred             HHHHHHHHhhhcCCCcEEEEEeccCCccccccC---HHHHHHHHHHcCCEEEEecccccccccccchh-hhhcCCCCccE
Q psy14299         82 FLEQTIQTSLAEKKIPLFVNATAGTTVLGAFDP---LDEIATVCEKYDLWMHVDACWGGSLIFSEKYS-FVLKGINRANS  157 (448)
Q Consensus        82 ~Le~~l~~~~~~~~~~~lVv~~~~~t~tG~~~~---l~~I~~ia~~~g~~l~VD~A~~~~~~~~~~~~-~~~~~~~~aD~  157 (448)
                      +|++++.+      ++++|+++.++|+||.+.+   +++|.++|++|++++++|.+|+......+... ..+.+...-.+
T Consensus       146 ~l~~~~~~------~~~~v~~~~p~NPtG~~~s~~~~~~l~~~~~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~~i  219 (378)
T PRK07682        146 QIEAAITA------KTKAILLCSPNNPTGAVLNKSELEEIAVIVEKHDLIVLSDEIYAELTYDEAYTSFASIKGMRERTI  219 (378)
T ss_pred             HHHhhcCc------ccEEEEEECCCCCcCcCcCHHHHHHHHHHHHHcCcEEEEehhhhhcccCCCCCChhhcccccCCEE
Confidence            99998854      4788889999999998865   88999999999999999999886543211000 01111112346


Q ss_pred             EEECCccccCCCC-ceEEEEEeccchhhhhccCCcccccccCcccccccCCCCCcccCCCCchhHHHHHHHHHhChHHHH
Q psy14299        158 VSWNPHKMLGAPL-QCSILLIKEKGLLHQANATAATYLFQQDKFYDVSFDTGDKSVQCGRKVDAFKLWLMWKARGNLGFR  236 (448)
Q Consensus       158 ~~~s~hK~l~~P~-g~G~l~vr~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~g~~  236 (448)
                      ++.|+.|.++.|. -+|+++..+ ++........ .+..              +                          
T Consensus       220 ~~~S~SK~~~~~GlR~G~~~~~~-~~i~~l~~~~-~~~~--------------~--------------------------  257 (378)
T PRK07682        220 LISGFSKGFAMTGWRLGFIAAPV-YFSEAMLKIH-QYSM--------------M--------------------------  257 (378)
T ss_pred             EEecCcccccChhhhhhhhhcCH-HHHHHHHHHH-Hhhc--------------c--------------------------
Confidence            7778899987542 377776643 3333221100 0000              0                          


Q ss_pred             HHHHHhhhhccCCCccchhhhhhhhhhhhhhhhhhhhhhhccccccccccCCCCCccccccchhhHHHHHHHHHhcCccH
Q psy14299        237 HFVDNAVDCSRGSMTFSTLLCFDLQGLLHQANATAATYLFQQDKFYDVSFDTGDKSVQCGRKVDAFKLWLMWKARGNLGF  316 (448)
Q Consensus       237 ~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~  316 (448)
                                                                                |.+.+.+..+..+++. +...+
T Consensus       258 ----------------------------------------------------------~~~~~~q~a~~~~l~~-~~~~~  278 (378)
T PRK07682        258 ----------------------------------------------------------CAPTMAQFAALEALRA-GNDDV  278 (378)
T ss_pred             ----------------------------------------------------------CCCHHHHHHHHHHHhC-ChHHH
Confidence                                                                      0000001111111211 12235


Q ss_pred             HHHHHHHHHHHHHHHHHhhcCCCeEEeccCCceeeEEEEee-ccCCCccccchhhhhhhhhhhHHHHHHHH-hCCcEEEE
Q psy14299        317 RHFVDNAVDCSRYFLSQISQRPGFRLVIPEFQCTNICFWFI-PVSLRDKVEDETWWSTLSKVAPRIKEKLV-LGGTLMIG  394 (448)
Q Consensus       317 ~~~~~~~~~l~~~~~~~L~~~pg~~l~~~~~~~~~v~f~~~-~~~~~~~~~~~~~~~~~~~~~~~i~~~L~-~~g~~~~~  394 (448)
                      +++.++..+.++++.+.|+++ |+++.  +|..+.+.+... +.+++               ..++.+.|+ ++| +.+.
T Consensus       279 ~~~~~~~~~~~~~~~~~L~~~-~~~~~--~p~g~~~~~~~~~~~~~~---------------~~~~~~~ll~~~g-v~v~  339 (378)
T PRK07682        279 IRMRDSYRKRRNFFVTSFNEI-GLTCH--VPGGAFYAFPSISSTGLS---------------SEEFAEQLLLEEK-VAVV  339 (378)
T ss_pred             HHHHHHHHHHHHHHHHHHHHC-CCccC--CCCeeEEEEEeccCCCCC---------------HHHHHHHHHHhCC-EEEc
Confidence            667777888899999999998 88763  455665555322 21222               236777776 567 5555


Q ss_pred             eeecCCcccccEEEEEecCCCCCCHHHHHHHHHHHHHHHHHh
Q psy14299        395 YQPLQHRNLHNFFRLVTTCHPASSRQDMDYAIDQIELRGAEV  436 (448)
Q Consensus       395 ~~~~~g~~~~~~lRis~~~~~~~t~edid~l~~al~~~~~~~  436 (448)
                      ++...+...++++|+|++    +++++++..++.|+++.+.+
T Consensus       340 pg~~f~~~~~~~iRis~~----~~~~~l~~~l~~l~~~l~~~  377 (378)
T PRK07682        340 PGSVFGESGEGFIRCSYA----TSLEQLQEAMKRMKRFVENK  377 (378)
T ss_pred             CchhhCcCCCCeEEEEeC----CCHHHHHHHHHHHHHHHhhc
Confidence            543333222489999994    26889999999998877643

>PRK07324 transaminase; Validated

Probab=99.75  E-value=8.4e-16  Score=156.25  Aligned_cols=155  Identities=11%  Similarity=0.064  Sum_probs=114.6

Q ss_pred             cEEEeCcHHHHHHHHHHHHHHhcCCcccccCCCCCCCeEEEecCCCchHHHHHHHHhCCCCCcEEEEecCCC--CCcCHH
Q psy14299          4 KPFLLPGGSISNMYSICLARYRLDPDTKRKGLSHLPPLCMFTSEDSHYSMLKAAHWLGIGMDNVIRVKTNER--GQMICS   81 (448)
Q Consensus         4 ~g~~t~ggT~an~~al~~a~~~~~~~~~~~G~~~~~~~~Vl~~~~~H~s~~~~~~~~g~~~~~v~~v~~~~~--g~id~e   81 (448)
                      .+++|+|+++++.+++.+...              +++.|+++...|.++...++..|.   +++.+|.+++  +.+|++
T Consensus        82 ~vi~t~G~~~al~~~~~~l~~--------------~gd~Vl~~~P~y~~~~~~~~~~g~---~v~~v~~~~~~~~~~d~~  144 (373)
T PRK07324         82 NILQTNGATGANFLVLYALVE--------------PGDHVISVYPTYQQLYDIPESLGA---EVDYWQLKEENGWLPDLD  144 (373)
T ss_pred             hEEEcCChHHHHHHHHHHhCC--------------CCCEEEEcCCCchhHHHHHHHcCC---EEEEEecccccCCCCCHH
Confidence            468999999999888876543              567788899999999999999998   7888988653  468999


Q ss_pred             HHHHHHHHhhhcCCCcEEEEEeccCCccccccC---HHHHHHHHHHcCCEEEEecccccccccccchhhhhcCCCCccEE
Q psy14299         82 FLEQTIQTSLAEKKIPLFVNATAGTTVLGAFDP---LDEIATVCEKYDLWMHVDACWGGSLIFSEKYSFVLKGINRANSV  158 (448)
Q Consensus        82 ~Le~~l~~~~~~~~~~~lVv~~~~~t~tG~~~~---l~~I~~ia~~~g~~l~VD~A~~~~~~~~~~~~~~~~~~~~aD~~  158 (448)
                      ++++.+.+      ++++|++++++|+||.+.+   +++|+++|++||+++++|++|....... ....... ...-.+.
T Consensus       145 ~l~~~~~~------~~kli~i~~p~NPtG~~~~~~~l~~i~~~a~~~~~~ii~De~y~~l~~~~-~~~s~~~-~~~~~I~  216 (373)
T PRK07324        145 ELRRLVRP------NTKLICINNANNPTGALMDRAYLEEIVEIARSVDAYVLSDEVYRPLDEDG-STPSIAD-LYEKGIS  216 (373)
T ss_pred             HHHHhCCC------CCcEEEEeCCCCCCCCCCCHHHHHHHHHHHHHCCCEEEEEccccccccCC-CCCChhh-ccCCEEE
Confidence            99887743      5789999999999999888   8999999999999999999986533211 0111011 1111255


Q ss_pred             EECCccccCCCC-ceEEEEEeccchhh
Q psy14299        159 SWNPHKMLGAPL-QCSILLIKEKGLLH  184 (448)
Q Consensus       159 ~~s~hK~l~~P~-g~G~l~vr~~~~~~  184 (448)
                      +.++.|.++.|. -+|.++. ++.++.
T Consensus       217 ~~s~SK~~~~~G~RiG~i~~-~~~li~  242 (373)
T PRK07324        217 TNSMSKTYSLPGIRVGWIAA-NEEVID  242 (373)
T ss_pred             EecchhhcCCccceeEEEec-CHHHHH
Confidence            668999887552 3577766 444443

>PRK15400 lysine decarboxylase CadA; Provisional

Probab=99.75  E-value=1e-16  Score=171.31  Aligned_cols=154  Identities=18%  Similarity=0.188  Sum_probs=120.2

Q ss_pred             cEEEeCcHHHHHHHHHHHHHHhcCCcccccCCCCCCCeEEEecCCCchHHHHHHHHhCCCCCcEEEEecCCC-----CCc
Q psy14299          4 KPFLLPGGSISNMYSICLARYRLDPDTKRKGLSHLPPLCMFTSEDSHYSMLKAAHWLGIGMDNVIRVKTNER-----GQM   78 (448)
Q Consensus         4 ~g~~t~ggT~an~~al~~a~~~~~~~~~~~G~~~~~~~~Vl~~~~~H~s~~~~~~~~g~~~~~v~~v~~~~~-----g~i   78 (448)
                      +-+.|+|+|.+|..++.++..              +++.|+++++.|.|+..++.+.|+   ..+++++..+     +.+
T Consensus       213 tyfvvNGTS~~n~av~~a~~~--------------~Gd~VLvdRN~HKSv~haLilsga---~PVYl~P~rn~~Gi~g~I  275 (714)
T PRK15400        213 SYMVTNGTSTANKIVGMYSAP--------------AGSTVLIDRNCHKSLTHLMMMSDV---TPIYFRPTRNAYGILGGI  275 (714)
T ss_pred             EEEEeCchHHHHHHHHHHhcC--------------CCCEEEeecccHHHHHHHHHHcCC---eEEEecccccccCCccCC
Confidence            346677777889888877655              678899999999999999999999   6667765432     345


Q ss_pred             C-----HHHHHHHHHHhhhcCCCcEEEEEeccCCccccccCHHHHHHHHHHcCCEEEEecccccccccccchhhhhcCC-
Q psy14299         79 I-----CSFLEQTIQTSLAEKKIPLFVNATAGTTVLGAFDPLDEIATVCEKYDLWMHVDACWGGSLIFSEKYSFVLKGI-  152 (448)
Q Consensus        79 d-----~e~Le~~l~~~~~~~~~~~lVv~~~~~t~tG~~~~l~~I~~ia~~~g~~l~VD~A~~~~~~~~~~~~~~~~~~-  152 (448)
                      +     ++.+++.|++..+. ++|+.++++.+++ .|.+.++++|.++|+.++  +|||.|||++..+.+.++.. ..+ 
T Consensus       276 ~~~~~~~e~i~~~i~~~p~a-k~p~~~vit~pTY-dG~~yd~~~I~~~~~~~~--ilvDEAwgah~~F~p~~~~~-sam~  350 (714)
T PRK15400        276 PQSEFQHATIAKRVKETPNA-TWPVHAVITNSTY-DGLLYNTDFIKKTLDVKS--IHFDSAWVPYTNFSPIYEGK-CGMS  350 (714)
T ss_pred             CccccCHHHHHHHHHhCccc-cCccEEEEECCCC-ccEecCHHHHHHHhCCCC--EEEEccchhhhccCcccCCc-Chhh
Confidence            6     89999999864322 3566888888866 999999999999999887  79999999988766644311 112 


Q ss_pred             CCc---c--EEEECCccccCCCCceEEEEEec
Q psy14299        153 NRA---N--SVSWNPHKMLGAPLQCSILLIKE  179 (448)
Q Consensus       153 ~~a---D--~~~~s~hK~l~~P~g~G~l~vr~  179 (448)
                      .++   |  +++.|.||.|.+..+++.+.++.
T Consensus       351 ~ga~~~~~i~vtQStHKtL~alTQaS~LHvkg  382 (714)
T PRK15400        351 GGRVEGKVIYETQSTHKLLAAFSQASMIHVKG  382 (714)
T ss_pred             cCCCCCCceEEEEchhhcccchhHHhHHHHcC
Confidence            234   5  99999999999999999988755

>PRK13578 ornithine decarboxylase; Provisional

Probab=99.75  E-value=1.5e-16  Score=170.12  Aligned_cols=158  Identities=20%  Similarity=0.160  Sum_probs=120.6

Q ss_pred             cEEEeCcHHHHHHHHHHHHHHhcCCcccccCCCCCCCeEEEecCCCchHHHHH-HHHhCCCCCcEEEEecCCC-----CC
Q psy14299          4 KPFLLPGGSISNMYSICLARYRLDPDTKRKGLSHLPPLCMFTSEDSHYSMLKA-AHWLGIGMDNVIRVKTNER-----GQ   77 (448)
Q Consensus         4 ~g~~t~ggT~an~~al~~a~~~~~~~~~~~G~~~~~~~~Vl~~~~~H~s~~~~-~~~~g~~~~~v~~v~~~~~-----g~   77 (448)
                      +-++|+|+|.+|..++++++.              +++.|++++++|.|+..+ ..+.|+   ..+++++..+     |.
T Consensus       192 tyFlvNGTS~gn~a~i~a~~~--------------~Gd~VLvdRN~HKSv~hgaLiLsGa---~PVYl~P~~n~~Gi~g~  254 (720)
T PRK13578        192 TYFVLNGTSASNKVVTNALLT--------------PGDLVLFDRNNHKSNHHGALIQAGA---TPVYLETARNPFGFIGG  254 (720)
T ss_pred             eEEEeCChhHHHHHHHHHhcC--------------CCCEEEeecccHHHHHHHHHHHcCC---eEEEeeccccccCCcCC
Confidence            346777778889888887765              678899999999999996 788898   5666665432     35


Q ss_pred             cCHHH-----HHHHHHHh-hh--cCCCc-EEEEEeccCCccccccCHHHHHHH-HHHcCCEEEEecccccccccccchhh
Q psy14299         78 MICSF-----LEQTIQTS-LA--EKKIP-LFVNATAGTTVLGAFDPLDEIATV-CEKYDLWMHVDACWGGSLIFSEKYSF  147 (448)
Q Consensus        78 id~e~-----Le~~l~~~-~~--~~~~~-~lVv~~~~~t~tG~~~~l~~I~~i-a~~~g~~l~VD~A~~~~~~~~~~~~~  147 (448)
                      ++++.     ++++|++. .+  ..++| ++++++.+|+ .|.+.|+++|.++ +|.++ .+|||.|||++..+.+.++.
T Consensus       255 I~~~~~~~~~i~~~i~~~~p~~~~~~~p~k~vvit~pTY-dG~~ydi~~I~~~~~h~~~-~llvDEAhgah~~F~p~~~~  332 (720)
T PRK13578        255 IDAHCFDEEYLREQIREVAPERADEARPFRLAVIQLGTY-DGTIYNARQVVDKIGHLCD-YILFDSAWVGYEQFIPMMAD  332 (720)
T ss_pred             CChHHccHHHHHHHHHhcCccccccccCceEEEEECCCC-cceeecHHHHHHHhhccCC-cEEEeCcchhhhccCccccc
Confidence            66555     88888764 11  11234 7889998888 9999999999998 68888 99999999999876664221


Q ss_pred             h--hcCCCCcc----EEEECCccccCCCCceEEEEEecc
Q psy14299        148 V--LKGINRAN----SVSWNPHKMLGAPLQCSILLIKEK  180 (448)
Q Consensus       148 ~--~~~~~~aD----~~~~s~hK~l~~P~g~G~l~vr~~  180 (448)
                      .  ...-.++|    +++.|.||.|.+-.+++.+.+++.
T Consensus       333 ~p~~al~~GaD~p~i~v~QStHKtL~alTQaS~LHvk~~  371 (720)
T PRK13578        333 CSPLLLELNENDPGIFVTQSVHKQQAGFSQTSQIHKKDN  371 (720)
T ss_pred             CChhhhhcCCCCCCeEEEEChhhcchhhhhHhhhhcCCc
Confidence            1  00112578    999999999999999999998664

>KOG1360|consensus

Probab=99.74  E-value=1.6e-16  Score=154.28  Aligned_cols=262  Identities=18%  Similarity=0.191  Sum_probs=192.4

Q ss_pred             CCeEEEecCCCchHHHHHHHHhCCCCCcEEEEecCCCCCcCHHHHHHHHHHhhhcCCCcEEEEEeccCCccccccCHHHH
Q psy14299         39 PPLCMFTSEDSHYSMLKAAHWLGIGMDNVIRVKTNERGQMICSFLEQTIQTSLAEKKIPLFVNATAGTTVLGAFDPLDEI  118 (448)
Q Consensus        39 ~~~~Vl~~~~~H~s~~~~~~~~g~~~~~v~~v~~~~~g~id~e~Le~~l~~~~~~~~~~~lVv~~~~~t~tG~~~~l~~I  118 (448)
                      |+-+|+.++..|.|++.+.+..+..   -....++     |+++|++.|+..  ....|++|.+..+.+++|.+.||++|
T Consensus       256 pgcei~SD~gNHASMI~GIrns~v~---K~IFrHN-----D~~hL~~lL~~~--~~svPKivAFEtVhSM~Gavcpleel  325 (570)
T KOG1360|consen  256 PGCEIFSDEGNHASMIQGIRNSRVP---KHIFRHN-----DLDHLEQLLQSS--PKSVPKIVAFETVHSMDGAVCPLEEL  325 (570)
T ss_pred             CCcEEeccccchHHHHHHhhhcCCc---ceeeccC-----CHHHHHHHHHhC--CCCCCceEEEeeeeccCCCcCCHHHH
Confidence            7778999999999999999988883   4456777     999999999863  23479999999999999999999999


Q ss_pred             HHHHHHcCCEEEEecccccccccc-----cchhhhhcCCCCccEEEECCccccCCCCceEEEEEeccchhhhhccCCccc
Q psy14299        119 ATVCEKYDLWMHVDACWGGSLIFS-----EKYSFVLKGINRANSVSWNPHKMLGAPLQCSILLIKEKGLLHQANATAATY  193 (448)
Q Consensus       119 ~~ia~~~g~~l~VD~A~~~~~~~~-----~~~~~~~~~~~~aD~~~~s~hK~l~~P~g~G~l~vr~~~~~~~~~~~~~~y  193 (448)
                      ++++++||+..++|..|+.|.+-.     .+.+.   -+..+|+++....|.+|+   .|..+.....+.....+..+++
T Consensus       326 cDvah~yGAiTFlDEVHAVGlYG~rGaGvgerdG---vm~kvDiIsGTLgKafGc---VGGYIAat~~LvDmiRSyAaGF  399 (570)
T KOG1360|consen  326 CDVAHKYGAITFLDEVHAVGLYGPRGAGVGERDG---VMHKVDIISGTLGKAFGC---VGGYIAATRKLVDMIRSYAAGF  399 (570)
T ss_pred             HHHHHHhCceeeeehhhhhccccCCCCCccccCC---cchhhhhcccchhhhccc---ccceehhhhhHHHHHHHhcCce
Confidence            999999999999999888776521     11111   123589999999999886   3444455556666777788888


Q ss_pred             ccccCcccccccCCCCCcccCCCCchhHHHHHHHHHhChHHHHHHHHHhhhhccCCCccchhhhhhhhhhhhhhhhhhhh
Q psy14299        194 LFQQDKFYDVSFDTGDKSVQCGRKVDAFKLWLMWKARGNLGFRHFVDNAVDCSRGSMTFSTLLCFDLQGLLHQANATAAT  273 (448)
Q Consensus       194 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~g~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  273 (448)
                      ++..+.++..                   +.         |                                       
T Consensus       400 IFTTSLPP~v-------------------l~---------G---------------------------------------  412 (570)
T KOG1360|consen  400 IFTTSLPPMV-------------------LA---------G---------------------------------------  412 (570)
T ss_pred             EEecCCChHH-------------------HH---------h---------------------------------------
Confidence            8876522110                   00         0                                       


Q ss_pred             hhhccccccccccCCCCCccccccchhhHHHHHHHH-HhcCccHHHHHHHHHHHHHHHHHHhhcCCCeEEeccCCceeeE
Q psy14299        274 YLFQQDKFYDVSFDTGDKSVQCGRKVDAFKLWLMWK-ARGNLGFRHFVDNAVDCSRYFLSQISQRPGFRLVIPEFQCTNI  352 (448)
Q Consensus       274 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~G~~~~~~~~~~l~~~~~~~L~~~pg~~l~~~~~~~~~v  352 (448)
                                                    +..+.+ .+.+||.. .++..+++.+|+++.|.++ |+.++  +..+.++
T Consensus       413 ------------------------------AleaVr~lk~~eg~~-lR~~hqrnv~~~kq~l~~~-GiPVi--~~pSHIi  458 (570)
T KOG1360|consen  413 ------------------------------ALEAVRILKSEEGRV-LRRQHQRNVKYVKQLLMEL-GIPVI--PNPSHII  458 (570)
T ss_pred             ------------------------------HHHHHHHHhhhhhHH-HHHHHHHHHHHHHHHHHHc-CCccc--CCCccee
Confidence                                          111112 12334432 3344567889999999998 99886  4567778


Q ss_pred             EEEeeccCCCccccchhhhhhhhhhhHHHHHHHHhCCcEEEE----eeecCCcccccEEEEEecCCCCCCHHHHHHHHHH
Q psy14299        353 CFWFIPVSLRDKVEDETWWSTLSKVAPRIKEKLVLGGTLMIG----YQPLQHRNLHNFFRLVTTCHPASSRQDMDYAIDQ  428 (448)
Q Consensus       353 ~f~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~L~~~g~~~~~----~~~~~g~~~~~~lRis~~~~~~~t~edid~l~~a  428 (448)
                      .+++-...                .+.++.+.|+.+..+++.    |+...|.   ..+|+.+  .+.+|.+-++.|+++
T Consensus       459 Pv~vgda~----------------l~~~~sd~Li~~h~iYvQaINyPTV~rG~---E~LRiaP--TP~HT~~mm~~lv~~  517 (570)
T KOG1360|consen  459 PVRVGDAA----------------LAKQASDILISKHNIYVQAINYPTVARGT---ERLRIAP--TPHHTPQMMNILVNA  517 (570)
T ss_pred             eeeccCHH----------------HHHHHHHHHHHhcCeEEEeccCCcccccc---eeeecCC--CCCCCHHHHHHHHHH
Confidence            77653211                235788888887667664    5566776   8999999  699999999999999


Q ss_pred             HHHHHHHhHH
Q psy14299        429 IELRGAEVDL  438 (448)
Q Consensus       429 l~~~~~~~~~  438 (448)
                      |..++.+++.
T Consensus       518 l~~vw~~v~l  527 (570)
T KOG1360|consen  518 LLDVWNEVGL  527 (570)
T ss_pred             HHHHHHHcCC
Confidence            9999998764

>PRK08363 alanine aminotransferase; Validated

Probab=99.74  E-value=1e-15  Score=156.97  Aligned_cols=149  Identities=11%  Similarity=-0.017  Sum_probs=109.7

Q ss_pred             cEEEeCcHHHHHHHHHHHHHHhcCCcccccCCCCCCCeEEEecCCCchHHHHHHHHhCCCCCcEEEE-ecCC-CCCcCHH
Q psy14299          4 KPFLLPGGSISNMYSICLARYRLDPDTKRKGLSHLPPLCMFTSEDSHYSMLKAAHWLGIGMDNVIRV-KTNE-RGQMICS   81 (448)
Q Consensus         4 ~g~~t~ggT~an~~al~~a~~~~~~~~~~~G~~~~~~~~Vl~~~~~H~s~~~~~~~~g~~~~~v~~v-~~~~-~g~id~e   81 (448)
                      ..++|+|+|+++.+++.+...              +++.|+++..+|..+...++..|.   .++.+ +.++ ++.+|++
T Consensus        95 ~i~it~G~~~al~~~~~~~~~--------------~gd~Vl~~~p~y~~~~~~~~~~g~---~~v~~~~~~~~~~~~d~~  157 (398)
T PRK08363         95 DVRVTAAVTEALQLIFGALLD--------------PGDEILIPGPSYPPYTGLVKFYGG---VPVEYRTIEEEGWQPDID  157 (398)
T ss_pred             hEEEeCCHHHHHHHHHHHhCC--------------CCCEEEEcCCCCcchHHHHHHcCC---EEEEeccccccCCcCCHH
Confidence            368999999998888766533              667899999999999999998887   56666 4444 4578999


Q ss_pred             HHHHHHHHhhhcCCCcEEEEEeccCCccccccC---HHHHHHHHHHcCCEEEEecccccccccccchhhhhcCCCCc-c-
Q psy14299         82 FLEQTIQTSLAEKKIPLFVNATAGTTVLGAFDP---LDEIATVCEKYDLWMHVDACWGGSLIFSEKYSFVLKGINRA-N-  156 (448)
Q Consensus        82 ~Le~~l~~~~~~~~~~~lVv~~~~~t~tG~~~~---l~~I~~ia~~~g~~l~VD~A~~~~~~~~~~~~~~~~~~~~a-D-  156 (448)
                      .+++.+.+      ++++|++++++|+||...+   +++|.++|+++|+++++|++|+...+..+.  ..+..+... . 
T Consensus       158 ~l~~~~~~------~~~~v~l~~p~NPtG~~~~~~~~~~l~~~a~~~~~~li~Deay~~~~~~~~~--~~~~~~~~~~~v  229 (398)
T PRK08363        158 DIRKKITE------KTKAIAVINPNNPTGALYEKKTLKEILDIAGEHDLPVISDEIYDLMTYEGKH--VSPGSLTKDVPV  229 (398)
T ss_pred             HHHhhCCc------ceEEEEEECCCCCCCcCcCHHHHHHHHHHHHHcCeEEEEhhhhhhhccCCcc--cCHHHcCcCCcE
Confidence            99988854      4789999999999998877   889999999999999999998854331110  001111111 2 


Q ss_pred             EEEECCccccCCC-CceEEEEE
Q psy14299        157 SVSWNPHKMLGAP-LQCSILLI  177 (448)
Q Consensus       157 ~~~~s~hK~l~~P-~g~G~l~v  177 (448)
                      +++.|++|+++.| ..+|++++
T Consensus       230 i~~~SfSK~~~~~GlRiG~~~~  251 (398)
T PRK08363        230 IVMNGLSKVYFATGWRLGYIYF  251 (398)
T ss_pred             EEEecchhccCCccceEEEEEE
Confidence            4456899985544 56788776

>KOG1359|consensus

Probab=99.74  E-value=1.6e-16  Score=148.87  Aligned_cols=280  Identities=16%  Similarity=0.183  Sum_probs=189.5

Q ss_pred             EEEeCcHHHHHHHHHHHHHHhcCCcccccCCCCCCCeEEEecCCCchHHHHHHHHhCCCCCcEEEEecCCCCCcCHHHHH
Q psy14299          5 PFLLPGGSISNMYSICLARYRLDPDTKRKGLSHLPPLCMFTSEDSHYSMLKAAHWLGIGMDNVIRVKTNERGQMICSFLE   84 (448)
Q Consensus         5 g~~t~ggT~an~~al~~a~~~~~~~~~~~G~~~~~~~~Vl~~~~~H~s~~~~~~~~g~~~~~v~~v~~~~~g~id~e~Le   84 (448)
                      .++.+++-.||+-++-+...              |++.|+.++..|.|++++.++...            .+.+|+-+++
T Consensus       130 ~ilypscfdANag~feail~--------------pedAvfSDeLNhASIIdGirLckr------------y~h~dv~~l~  183 (417)
T KOG1359|consen  130 TILYPSCFDANAGAFEAILT--------------PEDAVFSDELNHASIIDGIRLCKR------------YRHVDVFDLE  183 (417)
T ss_pred             eEEeccccccchHHHHHhcC--------------hhhhhhccccccchhhhhhHHHhh------------hccchhHHHH
Confidence            45566666666555444333              677899999999999999887653            2345778888


Q ss_pred             HHHHHhhhcCCCcEEEEEeccCCccccccCHHHHHHHHHHcCCEEEEecccccccccccch--hhhhcCCCCccEEEECC
Q psy14299         85 QTIQTSLAEKKIPLFVNATAGTTVLGAFDPLDEIATVCEKYDLWMHVDACWGGSLIFSEKY--SFVLKGINRANSVSWNP  162 (448)
Q Consensus        85 ~~l~~~~~~~~~~~lVv~~~~~t~tG~~~~l~~I~~ia~~~g~~l~VD~A~~~~~~~~~~~--~~~~~~~~~aD~~~~s~  162 (448)
                      ..+....  ..+-++|+.....++.|.+.|+++|++++++||++++||.+|+.+++-....  ...+.-...+|.+..+.
T Consensus       184 ~~l~~a~--k~r~klv~TDg~FSMDGdiaPl~ei~~La~kYgaLlfiDecHaTgf~G~tGrGt~E~~~vm~~vdiinsTL  261 (417)
T KOG1359|consen  184 HCLISAC--KMRLKLVVTDGVFSMDGDIAPLEEISQLAKKYGALLFIDECHATGFFGETGRGTAEEFGVMGDVDIINSTL  261 (417)
T ss_pred             HHHHHhh--hheEEEEEecceeccCCCcccHHHHHHHHHhcCcEEEEeecccceeecCCCCChHHHhCCCCcceehhhhh
Confidence            7776422  2357889999999999999999999999999999999999999887632110  11122234689999999


Q ss_pred             ccccCCCCceEEEEEeccchhhhhccCCcccccccCcccccccCCCCCcccCCCCchhHHHHHHHHHhChHHHHHHHHHh
Q psy14299        163 HKMLGAPLQCSILLIKEKGLLHQANATAATYLFQQDKFYDVSFDTGDKSVQCGRKVDAFKLWLMWKARGNLGFRHFVDNA  242 (448)
Q Consensus       163 hK~l~~P~g~G~l~vr~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~g~~~~i~~~  242 (448)
                      .|.+++-  .|.+....+.+.....+...+|+++.+.++...                        ..+...+...+.  
T Consensus       262 gKAlGga--~GGyttgp~~li~llrqr~RpylFSnslppavV------------------------~~a~ka~dllm~--  313 (417)
T KOG1359|consen  262 GKALGGA--SGGYTTGPKPLISLLRQRSRPYLFSNSLPPAVV------------------------GMAAKAYDLLMV--  313 (417)
T ss_pred             hhhhcCC--CCCCccCChhHHHHHHhcCCceeecCCCChhhh------------------------hhhHHHHHHHHh--
Confidence            9999853  344445566666666677889998765321100                        000011111000  


Q ss_pred             hhhccCCCccchhhhhhhhhhhhhhhhhhhhhhhccccccccccCCCCCccccccchhhHHHHHHHHHhcCccHHHHHHH
Q psy14299        243 VDCSRGSMTFSTLLCFDLQGLLHQANATAATYLFQQDKFYDVSFDTGDKSVQCGRKVDAFKLWLMWKARGNLGFRHFVDN  322 (448)
Q Consensus       243 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~  322 (448)
                                                                                               -.+...+
T Consensus       314 -------------------------------------------------------------------------s~~~i~~  320 (417)
T KOG1359|consen  314 -------------------------------------------------------------------------SSKEIQS  320 (417)
T ss_pred             -------------------------------------------------------------------------hHHHHHH
Confidence                                                                                     0122334


Q ss_pred             HHHHHHHHHHHhhcCCCeEEeccCCceeeEEEEeeccCCCccccchhhhhhhhhhhHHHHHHHHhCCcEEEE---eeecC
Q psy14299        323 AVDCSRYFLSQISQRPGFRLVIPEFQCTNICFWFIPVSLRDKVEDETWWSTLSKVAPRIKEKLVLGGTLMIG---YQPLQ  399 (448)
Q Consensus       323 ~~~l~~~~~~~L~~~pg~~l~~~~~~~~~v~f~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~L~~~g~~~~~---~~~~~  399 (448)
                      ...+.++|++....- ||+|. . ...++..+.+-     +           .+.+..+.+.|++.|+.++.   |.++.
T Consensus       321 ~~a~~qrfr~~me~a-GftIs-g-~~hPI~pv~lG-----d-----------a~lA~~~ad~lLk~Gi~Vigfs~PvVP~  381 (417)
T KOG1359|consen  321 RQANTQRFREFMEAA-GFTIS-G-ASHPICPVMLG-----D-----------ARLASKMADELLKRGIYVIGFSYPVVPK  381 (417)
T ss_pred             HHHHHHHHHHHHHhc-Cceec-C-CCCCccceecc-----c-----------HHHHHHHHHHHHhcCceEEeecCCcCCC
Confidence            455678888888875 99996 2 23455555321     1           12345788999999965554   45666


Q ss_pred             CcccccEEEEEecCCCCCCHHHHHHHHHHHHHHHHHhH
Q psy14299        400 HRNLHNFFRLVTTCHPASSRQDMDYAIDQIELRGAEVD  437 (448)
Q Consensus       400 g~~~~~~lRis~~~~~~~t~edid~l~~al~~~~~~~~  437 (448)
                      |+   ..+|+-+  +..+|+||||++++++.++.+...
T Consensus       382 gk---ariRVqi--SAaHt~edid~~i~Af~~vgr~~~  414 (417)
T KOG1359|consen  382 GK---ARIRVQI--SAAHTEEDIDRLIEAFSEVGRFLN  414 (417)
T ss_pred             Cc---eEEEEEE--ehhcCHHHHHHHHHHHHHHHHhhc
Confidence            77   8999999  789999999999999999987643

>PRK06207 aspartate aminotransferase; Provisional

Probab=99.74  E-value=2.2e-15  Score=154.88  Aligned_cols=150  Identities=12%  Similarity=0.135  Sum_probs=112.3

Q ss_pred             cEEEeCcHHHHHHHHHHHHHHhcCCcccccCCCCCCCeEEEecCCCchHHHHHHHHhCCCCCcEEEEecC-----CCCCc
Q psy14299          4 KPFLLPGGSISNMYSICLARYRLDPDTKRKGLSHLPPLCMFTSEDSHYSMLKAAHWLGIGMDNVIRVKTN-----ERGQM   78 (448)
Q Consensus         4 ~g~~t~ggT~an~~al~~a~~~~~~~~~~~G~~~~~~~~Vl~~~~~H~s~~~~~~~~g~~~~~v~~v~~~-----~~g~i   78 (448)
                      ..++|+|+++++..++.+...              +++.|++....+..+...++..|.   +++.++.+     .++.+
T Consensus       104 ~I~it~Ga~~al~~~~~~l~~--------------~Gd~Vlv~~P~y~~~~~~~~~~g~---~v~~v~~~~~~~~~~~~~  166 (405)
T PRK06207        104 ELIITPGTQGALFLAVAATVA--------------RGDKVAIVQPDYFANRKLVEFFEG---EMVPVQLDYLSADKRAGL  166 (405)
T ss_pred             CEEEeCCcHHHHHHHHHHhcC--------------CCCEEEEeCCCchhHHHHHHHcCC---EEEEEeccccCcccCCCc
Confidence            578999999998877766543              677888899999999999999898   78888875     25789


Q ss_pred             CHHHHHHHHHHhhhcCCCcEEEEEeccCCccccccC---HHHHHHHHHHcCCEEEEecccccccccccchhhhhcCC---
Q psy14299         79 ICSFLEQTIQTSLAEKKIPLFVNATAGTTVLGAFDP---LDEIATVCEKYDLWMHVDACWGGSLIFSEKYSFVLKGI---  152 (448)
Q Consensus        79 d~e~Le~~l~~~~~~~~~~~lVv~~~~~t~tG~~~~---l~~I~~ia~~~g~~l~VD~A~~~~~~~~~~~~~~~~~~---  152 (448)
                      |+++|++++++      ++++|++++++|+||.+.+   +++|+++|++||+++++|++|+-..+....... +..+   
T Consensus       167 d~~~l~~~~~~------~~k~v~l~~P~NPTG~~~s~e~l~~l~~~a~~~~~~iI~De~Y~~~~~~~~~~~~-~~~~~~~  239 (405)
T PRK06207        167 DLDQLEEAFKA------GVRVFLFSNPNNPAGVVYSAEEIAQIAALARRYGATVIVDQLYSRLLYDGTSYTH-LRALPID  239 (405)
T ss_pred             CHHHHHHhhhh------cCeEEEECCCCCCCCcCCCHHHHHHHHHHHHHcCCEEEEeccccccccCCCCCCc-hhcCCCC
Confidence            99999999865      4779999999999999887   778899999999999999998864431111000 1001   


Q ss_pred             CCccEEEECCccccCCC-CceEEEEE
Q psy14299        153 NRANSVSWNPHKMLGAP-LQCSILLI  177 (448)
Q Consensus       153 ~~aD~~~~s~hK~l~~P-~g~G~l~v  177 (448)
                      ..-=+++.|+.|.++.| .-+|+++.
T Consensus       240 ~~~vi~i~SfSK~~~lpGlRiG~ii~  265 (405)
T PRK06207        240 PENVITIMGPSKTESLSGYRLGVAFG  265 (405)
T ss_pred             cCcEEEEecchhhccCcccceEEEEc
Confidence            00115667889998866 12777654

>PLN00145 tyrosine/nicotianamine aminotransferase; Provisional

Probab=99.74  E-value=4e-15  Score=154.02  Aligned_cols=151  Identities=11%  Similarity=0.028  Sum_probs=110.3

Q ss_pred             cEEEeCcHHHHHHHHHHHHHHhcCCcccccCCCCCCCeEEEecCCCchHHHHHHHHhCCCCCcEEEEecC--CCCCcCHH
Q psy14299          4 KPFLLPGGSISNMYSICLARYRLDPDTKRKGLSHLPPLCMFTSEDSHYSMLKAAHWLGIGMDNVIRVKTN--ERGQMICS   81 (448)
Q Consensus         4 ~g~~t~ggT~an~~al~~a~~~~~~~~~~~G~~~~~~~~Vl~~~~~H~s~~~~~~~~g~~~~~v~~v~~~--~~g~id~e   81 (448)
                      .+++|+|+|+++.+++.+...              +++.|+++...+..+...+...|.   +++.++..  .++.+|++
T Consensus       119 ~v~it~G~~~al~l~~~~l~~--------------~Gd~Vlv~~P~y~~y~~~~~~~g~---~~~~~~~~~~~~~~~d~~  181 (430)
T PLN00145        119 DIYLTAGCAQAIEIIMSVLAQ--------------PGANILLPRPGYPLYEARAVFSGL---EVRHFDLLPERGWEVDLE  181 (430)
T ss_pred             hEEEeCCHHHHHHHHHHHhcC--------------CCCEEEEcCCCCccHHHHHHHcCC---EEEEeeCCcccCCcCCHH
Confidence            478999999998888776543              567799999999888888888888   67777653  35789999


Q ss_pred             HHHHHHHHhhhcCCCcEEEEEeccCCccccccC---HHHHHHHHHHcCCEEEEecccccccccccchhhh--hcCCCCcc
Q psy14299         82 FLEQTIQTSLAEKKIPLFVNATAGTTVLGAFDP---LDEIATVCEKYDLWMHVDACWGGSLIFSEKYSFV--LKGINRAN  156 (448)
Q Consensus        82 ~Le~~l~~~~~~~~~~~lVv~~~~~t~tG~~~~---l~~I~~ia~~~g~~l~VD~A~~~~~~~~~~~~~~--~~~~~~aD  156 (448)
                      ++++.+++      +++++++++++|+||.+.|   +++|+++|++||+++++|++|....+........  +... .-=
T Consensus       182 ~l~~~~~~------~~~~i~i~~P~NPtG~v~~~~~l~~i~~~a~~~~i~ii~De~Y~~~~~~~~~~~~~~~~~~~-~~v  254 (430)
T PLN00145        182 GVEALADE------NTVAMVIINPNNPCGSVYSYEHLAKIAETARKLGILVIADEVYDHLTFGSKPFVPMGVFGEV-APV  254 (430)
T ss_pred             HHHHHhCc------CceEEEEeCCCCCCCCCCCHHHHHHHHHHHHHcCCEEEEeccchhhccCCCCccchhhhccc-CcE
Confidence            99988754      4789999999999999988   8889999999999999999987543311110000  1110 011


Q ss_pred             EEEECCccccCCC-CceEEEEEe
Q psy14299        157 SVSWNPHKMLGAP-LQCSILLIK  178 (448)
Q Consensus       157 ~~~~s~hK~l~~P-~g~G~l~vr  178 (448)
                      +++.|..|.++.| .-+|+++..
T Consensus       255 i~~~S~SK~~~~pG~RlG~iv~~  277 (430)
T PLN00145        255 LTLGSISKRWVVPGWRLGWIATC  277 (430)
T ss_pred             EEEeccccccCCCCeeEEEEEEe
Confidence            4556788875554 446666553

>PRK00950 histidinol-phosphate aminotransferase; Validated

Probab=99.73  E-value=1.1e-15  Score=154.40  Aligned_cols=147  Identities=12%  Similarity=0.003  Sum_probs=105.7

Q ss_pred             EEE-eCcHHHHHHHHHHHHHHhcCCcccccCCCCCCCeEEEecCCCchHHHHHHHHhCCCCCcEEEEecCCCCCcCHHHH
Q psy14299          5 PFL-LPGGSISNMYSICLARYRLDPDTKRKGLSHLPPLCMFTSEDSHYSMLKAAHWLGIGMDNVIRVKTNERGQMICSFL   83 (448)
Q Consensus         5 g~~-t~ggT~an~~al~~a~~~~~~~~~~~G~~~~~~~~Vl~~~~~H~s~~~~~~~~g~~~~~v~~v~~~~~g~id~e~L   83 (448)
                      .++ |+|+++++..++.+..+              +++.|+++...+..+...++..|.   +++.++.+.++.+|++++
T Consensus        89 i~~~~~Ga~~~i~~~~~~~~~--------------~gd~vlv~~p~y~~~~~~~~~~g~---~~~~~~~~~~~~~~~~~l  151 (361)
T PRK00950         89 IIVGGDGMDEVIDTLMRTFID--------------PGDEVIIPTPTFSYYEISAKAHGA---KPVYAKREEDFSLDVDSV  151 (361)
T ss_pred             EEEeCCCHHHHHHHHHHHhcC--------------CCCEEEEcCCChHHHHHHHHHcCC---EEEEeecCCCCCcCHHHH
Confidence            456 56667776666554332              566788888777777777888888   788898777779999999


Q ss_pred             HHHHHHhhhcCCCcEEEEEeccCCccccccCHHHHHHHHHHcCCEEEEecccccccccccchhhhhcCCCCccEEEECCc
Q psy14299         84 EQTIQTSLAEKKIPLFVNATAGTTVLGAFDPLDEIATVCEKYDLWMHVDACWGGSLIFSEKYSFVLKGINRANSVSWNPH  163 (448)
Q Consensus        84 e~~l~~~~~~~~~~~lVv~~~~~t~tG~~~~l~~I~~ia~~~g~~l~VD~A~~~~~~~~~~~~~~~~~~~~aD~~~~s~h  163 (448)
                      ++.+.+      ++++|++++++|+||.+.|.+++.++|+++|+++++|++|+... . ........... --++..++.
T Consensus       152 ~~~~~~------~~~~v~~~~p~nptG~~~~~~~l~~l~~~~~~~li~De~y~~~~-~-~~~~~~~~~~~-~vi~~~S~S  222 (361)
T PRK00950        152 LNAITE------KTKVIFLCTPNNPTGNLIPEEDIRKILESTDALVFVDEAYVEFA-E-YDYTPLALEYD-NLIIGRTFS  222 (361)
T ss_pred             HHHhcc------CCCEEEEeCCCCCCCCCcCHHHHHHHHHHCCcEEEEECchhhhC-c-cchHHHHHhcC-CEEEEEeeh
Confidence            998853      46788889999999999999999999999999999999997443 1 11111111111 114556889


Q ss_pred             cccCCCC-ceEEEEE
Q psy14299        164 KMLGAPL-QCSILLI  177 (448)
Q Consensus       164 K~l~~P~-g~G~l~v  177 (448)
                      |.++.|. -+|+++.
T Consensus       223 K~~g~~GlRiG~~~~  237 (361)
T PRK00950        223 KVFGLAGLRIGYGFV  237 (361)
T ss_pred             HhhcCchhhcchhcC
Confidence            9887553 3566554

>COG1003 GcvP Glycine cleavage system protein P (pyridoxal-binding), C-terminal domain [Amino acid transport and metabolism]

Probab=99.73  E-value=8.3e-16  Score=151.40  Aligned_cols=314  Identities=16%  Similarity=0.126  Sum_probs=197.7

Q ss_pred             eCcHHHHHHHHHHHHHHhcCCcccccCCCCCCCeEEEecCCCchHHHHHHHHhCCCCCcEEEEecCCCCCcCHHHHHHHH
Q psy14299          8 LPGGSISNMYSICLARYRLDPDTKRKGLSHLPPLCMFTSEDSHYSMLKAAHWLGIGMDNVIRVKTNERGQMICSFLEQTI   87 (448)
Q Consensus         8 t~ggT~an~~al~~a~~~~~~~~~~~G~~~~~~~~Vl~~~~~H~s~~~~~~~~g~~~~~v~~v~~~~~g~id~e~Le~~l   87 (448)
                      -+.|+.+-..+++..|.+.    ..+|-  ..+.++++++.+|-.+-.++.+.|+   +|+.|+++++|.+|+++|++.+
T Consensus       131 P~AGAqGE~aGll~Ir~YH----e~rG~--~~R~~~LIP~SAHGTNPASAam~G~---~VV~V~~~~~G~VDlddLk~k~  201 (496)
T COG1003         131 PNAGAQGEYAGLLAIRAYH----ESRGE--GHRNICLIPDSAHGTNPASAAMAGF---KVVVVKCDENGNVDLDDLRAKA  201 (496)
T ss_pred             CCCCcchhhHHHHHHHHHH----HHcCC--CcCcEEEeeccccCCChhhHhhcCc---eEEEEecCCCCCccHHHHHHHh
Confidence            3456666666666555542    12232  2667899999999999999999999   8999999999999999999999


Q ss_pred             HHhhhcCCCcEEEEEeccCCccccc-cCHHHHHHHHHHcCCEEEEecccccccccccchhhhhcCCCCccEEEECCcccc
Q psy14299         88 QTSLAEKKIPLFVNATAGTTVLGAF-DPLDEIATVCEKYDLWMHVDACWGGSLIFSEKYSFVLKGINRANSVSWNPHKML  166 (448)
Q Consensus        88 ~~~~~~~~~~~lVv~~~~~t~tG~~-~~l~~I~~ia~~~g~~l~VD~A~~~~~~~~~~~~~~~~~~~~aD~~~~s~hK~l  166 (448)
                      .+      ++..+++|.++| .|++ .+|.+|+++.|++|..+..|||---..+-.-  +   .|.-++|++-++.||++
T Consensus       202 ~~------~~AalMiTnPsT-~GvFE~~I~ei~~ivH~~Gg~vY~DGANlNA~vG~~--r---PGd~G~DV~HlNLHKTF  269 (496)
T COG1003         202 ED------NLAALMITNPST-LGVFEEDIREICEIVHEAGGQVYYDGANLNAIVGLA--R---PGDMGFDVVHLNLHKTF  269 (496)
T ss_pred             cc------ceeEEEeccCcc-cccchhhHHHHHHHHHHcCCEEEecCcchhhhhccc--c---ccccccceEEeeccccc
Confidence            75      577899999998 8877 6799999999999999999997542222100  0   12225899999999998


Q ss_pred             CCCCc-----eEEEEEeccchhhhhccCCcccccccCcccccccCCCCCcccCCCCchhHHHHHHHHHhChHHHHHHHHH
Q psy14299        167 GAPLQ-----CSILLIKEKGLLHQANATAATYLFQQDKFYDVSFDTGDKSVQCGRKVDAFKLWLMWKARGNLGFRHFVDN  241 (448)
Q Consensus       167 ~~P~g-----~G~l~vr~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~g~~~~i~~  241 (448)
                      ..|-|     .|.+.++..  +...++....| .... .+....+.. +++--++.+           +|..+       
T Consensus       270 ~iPHGGGGPG~GPvgVk~~--L~pfLP~p~~~-~~~~-~y~~~~~~~-~s~g~~~a~-----------~Gs~~-------  326 (496)
T COG1003         270 CIPHGGGGPGAGPVGVKAH--LAPFLPGPVVY-HDVG-EYRLDYDGK-KSIGVSAAP-----------YGSAS-------  326 (496)
T ss_pred             ccCCCCCCCCCCceehHhh--ccccCCCCccc-CCCc-cccccCCCC-ccceeeccc-----------cCcch-------
Confidence            77754     445556432  22222211011 0000 000000000 000000000           01000       


Q ss_pred             hhhhccCCCccchhhhhhhhhhhhhhhhhhhhhhhccccccccccCCCCCccccccchhhHHHHHHHHHhcCccHHHHHH
Q psy14299        242 AVDCSRGSMTFSTLLCFDLQGLLHQANATAATYLFQQDKFYDVSFDTGDKSVQCGRKVDAFKLWLMWKARGNLGFRHFVD  321 (448)
Q Consensus       242 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~  321 (448)
                                                                                -....|..++..|.+|++..-+
T Consensus       327 ----------------------------------------------------------il~~a~~YI~~mG~~GL~~ase  348 (496)
T COG1003         327 ----------------------------------------------------------ILPIAWAYIRMMGADGLKQASE  348 (496)
T ss_pred             ----------------------------------------------------------HHHHHHHHHHHHhHHHHHHHHH
Confidence                                                                      1223445555666666667777


Q ss_pred             HHHHHHHHHHHHhhcCCCeEEeccCC--ceeeEEEEeeccCCCccccchhhhhhhhhhhHHHHHHHHhCCcEEEEeeecC
Q psy14299        322 NAVDCSRYFLSQISQRPGFRLVIPEF--QCTNICFWFIPVSLRDKVEDETWWSTLSKVAPRIKEKLVLGGTLMIGYQPLQ  399 (448)
Q Consensus       322 ~~~~l~~~~~~~L~~~pg~~l~~~~~--~~~~v~f~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~L~~~g~~~~~~~~~~  399 (448)
                      ...-+++|+..+|+.  .++++..+.  ....+++...|           +.+..+.....+.++|++.| ++. |+...
T Consensus       349 ~AvLNANYia~rL~~--~y~~~y~~~~~~~HE~ild~r~-----------l~~~~Gv~~~DvAKrLlD~G-fHa-PT~~F  413 (496)
T COG1003         349 VAVLNANYIARRLKG--YYPVPYTGENRVAHECILDARP-----------LKKETGVRALDVAKRLLDYG-FHA-PTMYF  413 (496)
T ss_pred             HHHHhHHHHHHHhhh--cCccccCCCCcceeEEEeechH-----------hHhhcCCcHHHHHHHHHhcC-CCC-CcccC
Confidence            778889999999997  466642222  35666665442           11223334558999999999 332 23221


Q ss_pred             CcccccEEEEEecCCCCCCHHHHHHHHHHHHHHHHHhHHhh
Q psy14299        400 HRNLHNFFRLVTTCHPASSRQDMDYAIDQIELRGAEVDLEM  440 (448)
Q Consensus       400 g~~~~~~lRis~~~~~~~t~edid~l~~al~~~~~~~~~~~  440 (448)
                      --.-.+.+=|=+  ...-+++++|++++++.++.++.....
T Consensus       414 PliV~~tLMIEP--TEsEsk~eLDrf~dami~I~~Ea~~~~  452 (496)
T COG1003         414 PLIVAGTLMIEP--TESESKEELDRFIDAMIAIREEADAVP  452 (496)
T ss_pred             ccccccceeecC--CCCCCHHHHHHHHHHHHHHHHHHHhcc
Confidence            100025677777  467889999999999999998876543

>PRK13238 tnaA tryptophanase/L-cysteine desulfhydrase, PLP-dependent; Provisional

Probab=99.73  E-value=1.9e-15  Score=157.11  Aligned_cols=160  Identities=14%  Similarity=0.159  Sum_probs=114.0

Q ss_pred             cEEEeCcHHHHHHHHHHHHHHhcCCcccccCCCCCCCeEEEecCCCch-HHHHHHHHhCCCCCcEEEEecCC--------
Q psy14299          4 KPFLLPGGSISNMYSICLARYRLDPDTKRKGLSHLPPLCMFTSEDSHY-SMLKAAHWLGIGMDNVIRVKTNE--------   74 (448)
Q Consensus         4 ~g~~t~ggT~an~~al~~a~~~~~~~~~~~G~~~~~~~~Vl~~~~~H~-s~~~~~~~~g~~~~~v~~v~~~~--------   74 (448)
                      .+++|+|||+|+.+++.+..+              |++ |+++.. |+ +......+.|.   +++.+++++        
T Consensus        95 ~vv~t~ggt~A~~~~~~all~--------------pGD-Vii~~p-~~~~~~~~i~~~G~---~~v~v~~~~~~~~~~~~  155 (460)
T PRK13238         95 YTIPTHQGRAAEQILFPVLIK--------------KGD-VVPSNY-HFDTTRAHIELNGA---TAVDLVIDEALDTGSRH  155 (460)
T ss_pred             cEEECCCHHHHHHHHHHHhCC--------------CCC-EEccCC-cccchHHHHHHcCC---EEEEEeccccccccccc
Confidence            478999999999988766543              566 666655 55 44455667787   677888753        


Q ss_pred             --CCCcCHHHHHHHHHHhhhcCCCcEEEEEeccCCccc-cc---cCHHHHHHHHHHcCCEEEEecccccc-cccccc---
Q psy14299         75 --RGQMICSFLEQTIQTSLAEKKIPLFVNATAGTTVLG-AF---DPLDEIATVCEKYDLWMHVDACWGGS-LIFSEK---  144 (448)
Q Consensus        75 --~g~id~e~Le~~l~~~~~~~~~~~lVv~~~~~t~tG-~~---~~l~~I~~ia~~~g~~l~VD~A~~~~-~~~~~~---  144 (448)
                        .|.+|+++|++.+.+.  ...++++|++++++|++| ..   .++++|.++|++||++++.|+|+... .++...   
T Consensus       156 ~f~g~id~e~Le~~i~~~--~~~~tk~Ivl~~p~NptGG~v~s~~~l~~I~~ia~~~gi~li~Daa~~~e~a~f~~~~e~  233 (460)
T PRK13238        156 PFKGNFDLEKLEALIEEV--GAENVPFIVMTITNNSAGGQPVSMANLRAVYEIAKKYGIPVVIDAARFAENAYFIKQREP  233 (460)
T ss_pred             cccCCcCHHHHHHHHhhc--CCCceeEEEEecCCCCCCCcCCCHHHHHHHHHHHHHcCCEEEEECcchhhhhhhhhhccc
Confidence              2459999999999752  113588999999999998 44   55789999999999999999988553 222110   


Q ss_pred             --hhhhhcC-----CCCccEEEECCccccCCCCceEEEEEeccchhhh
Q psy14299        145 --YSFVLKG-----INRANSVSWNPHKMLGAPLQCSILLIKEKGLLHQ  185 (448)
Q Consensus       145 --~~~~~~~-----~~~aD~~~~s~hK~l~~P~g~G~l~vr~~~~~~~  185 (448)
                        ....+..     .+.+|++++|+||.+.+|.| |+++.++.++...
T Consensus       234 g~~~~si~~i~~~~~s~~D~~~~Sg~K~g~~~~G-G~i~~~d~~l~~~  280 (460)
T PRK13238        234 GYKDKSIKEIAREMFSYADGLTMSAKKDAMVNIG-GLLCFRDEDLFTE  280 (460)
T ss_pred             cccCCCHHHHhhhhcccCcEEEEecccCCCCcce-eEEEcChHHHHHH
Confidence              0000110     13589999999999999986 8877776555444

>PRK07681 aspartate aminotransferase; Provisional

Probab=99.73  E-value=1.8e-15  Score=155.25  Aligned_cols=156  Identities=8%  Similarity=0.019  Sum_probs=114.0

Q ss_pred             cEEEeCcHHHHHHHHHHHHHHhcCCcccccCCCCCCCeEEEecCCCchHHHHHHHHhCCCCCcEEEEecCCC--CCcCHH
Q psy14299          4 KPFLLPGGSISNMYSICLARYRLDPDTKRKGLSHLPPLCMFTSEDSHYSMLKAAHWLGIGMDNVIRVKTNER--GQMICS   81 (448)
Q Consensus         4 ~g~~t~ggT~an~~al~~a~~~~~~~~~~~G~~~~~~~~Vl~~~~~H~s~~~~~~~~g~~~~~v~~v~~~~~--g~id~e   81 (448)
                      ..++|+|+++++.+++.+...              +++.|+++...|..+...++..|.   +++.+|.+++  +.+|++
T Consensus        95 ~I~it~G~~~al~~~~~~~~~--------------~Gd~Vlv~~P~y~~~~~~~~~~G~---~~~~v~~~~~~~~~~d~~  157 (399)
T PRK07681         95 EVLLLMGSQDGLVHLPMVYAN--------------PGDIILVPDPGYTAYETGIQMAGA---TSYYMPLKKENDFLPDLE  157 (399)
T ss_pred             eEEECCCcHHHHHHHHHHhCC--------------CCCEEEECCCCccchHHHHHhcCC---EEEEEecCCCCCCcCCHH
Confidence            478899999998776655443              567899999999999999999998   7889998754  467999


Q ss_pred             HHHHHHHHhhhcCCCcEEEEEeccCCccccccC---HHHHHHHHHHcCCEEEEecccccccccccchhhh--hcCCCCcc
Q psy14299         82 FLEQTIQTSLAEKKIPLFVNATAGTTVLGAFDP---LDEIATVCEKYDLWMHVDACWGGSLIFSEKYSFV--LKGINRAN  156 (448)
Q Consensus        82 ~Le~~l~~~~~~~~~~~lVv~~~~~t~tG~~~~---l~~I~~ia~~~g~~l~VD~A~~~~~~~~~~~~~~--~~~~~~aD  156 (448)
                      ++++.+.+      ++++|++++++|+||.+.+   +++|.++|++||+++++|.+|+-...........  +.+.....
T Consensus       158 ~l~~~~~~------~~k~v~l~~P~NPTG~~~s~~~~~~i~~~a~~~~~~iI~De~y~~~~~~~~~~~~~~~~~~~~~~~  231 (399)
T PRK07681        158 LIPEEIAD------KAKMMILNFPGNPVPAMAHEDFFKEVIAFAKKHNIIVVHDFAYAEFYFDGNKPISFLSVPGAKEVG  231 (399)
T ss_pred             HHHHhccc------cceEEEEeCCCCCcCcCCCHHHHHHHHHHHHHcCeEEEEeccchhheeCCCCCCChhhCCCCcccE
Confidence            99888853      4789999999999999877   7888999999999999999988554321110010  11111123


Q ss_pred             EEEECCccccCCC-CceEEEEEeccchh
Q psy14299        157 SVSWNPHKMLGAP-LQCSILLIKEKGLL  183 (448)
Q Consensus       157 ~~~~s~hK~l~~P-~g~G~l~vr~~~~~  183 (448)
                      ++..|+.|.++.| .-+|+++. ++++.
T Consensus       232 i~~~S~SK~~~~~GlRiG~~i~-~~~l~  258 (399)
T PRK07681        232 VEINSLSKSYSLAGSRIGYMIG-NEEIV  258 (399)
T ss_pred             EEEeecccccCCccceeEEEec-CHHHH
Confidence            6667899988644 23777765 44443

>TIGR03537 DapC succinyldiaminopimelate transaminase

Probab=99.73  E-value=2.1e-15  Score=151.97  Aligned_cols=152  Identities=12%  Similarity=0.013  Sum_probs=111.4

Q ss_pred             cEEEeCcHHHHHHHHHHHHHHhcCCcccccCCCCCCCeEEEecCCCchHHHHHHHHhCCCCCcEEEEecCC--CCCcCHH
Q psy14299          4 KPFLLPGGSISNMYSICLARYRLDPDTKRKGLSHLPPLCMFTSEDSHYSMLKAAHWLGIGMDNVIRVKTNE--RGQMICS   81 (448)
Q Consensus         4 ~g~~t~ggT~an~~al~~a~~~~~~~~~~~G~~~~~~~~Vl~~~~~H~s~~~~~~~~g~~~~~v~~v~~~~--~g~id~e   81 (448)
                      ..++|+|+++++..++.+...+        |   .+++.|+++...+..+...++..|.   +++.++.++  +..+|++
T Consensus        62 ~Iiit~Gs~~ai~~~~~~~~~~--------g---~~~d~Vl~~~p~y~~~~~~~~~~g~---~~~~v~~~~~~~~~~d~~  127 (350)
T TIGR03537        62 QVLPSAGSKEAIFHFPLVFIDP--------E---EDRRRVIFGTPGYPVYERGALFAGG---EPTAVKLKKEDGFLLRLE  127 (350)
T ss_pred             cEEEcCChHHHHHHHHHHHcCC--------C---CCCceEEEcCCCCcchHHHHHhcCC---EEEEcccCcccCCccCHH
Confidence            5889999999987777655442        1   1235799999999999999999999   788998863  3468999


Q ss_pred             HHHHHHHHhhhcCCCcEEEEEeccCCccccccC---HHHHHHHHHHcCCEEEEecccccccccccchhhhhcCCC-CccE
Q psy14299         82 FLEQTIQTSLAEKKIPLFVNATAGTTVLGAFDP---LDEIATVCEKYDLWMHVDACWGGSLIFSEKYSFVLKGIN-RANS  157 (448)
Q Consensus        82 ~Le~~l~~~~~~~~~~~lVv~~~~~t~tG~~~~---l~~I~~ia~~~g~~l~VD~A~~~~~~~~~~~~~~~~~~~-~aD~  157 (448)
                      ++++++.+      +++++++++++|+||...|   +++|.++|++||+++++|++|+-.....+.  ....... .-.+
T Consensus       128 ~l~~~~~~------~~~~i~i~~p~NPtG~~~~~~~~~~l~~~a~~~~~~ii~De~y~~~~~~~~~--~~~~~~~~~~~i  199 (350)
T TIGR03537       128 KVEKSILE------ETKIVWINYPHNPTGATAPRSYLKETIAMCREHGIILCSDECYTEIYFGEPP--HSALEVGIENVL  199 (350)
T ss_pred             HHHHhhhh------ccEEEEEeCCCCCcCcccCHHHHHHHHHHHHHcCcEEEEeccccccccCCCC--CchhhcCcCCEE
Confidence            99998865      4789999999999998888   899999999999999999998754321111  0011111 1125


Q ss_pred             EEECCccccCCCC-ceEEEEE
Q psy14299        158 VSWNPHKMLGAPL-QCSILLI  177 (448)
Q Consensus       158 ~~~s~hK~l~~P~-g~G~l~v  177 (448)
                      ++.|++|.++.|. -+|+++.
T Consensus       200 ~~~s~SK~~g~~GlRiG~~~~  220 (350)
T TIGR03537       200 AFHSLSKRSGMTGYRSGFVAG  220 (350)
T ss_pred             EEeecccccCCccccceeeec
Confidence            5568999887653 2555543

Note: the detailed information included in the EC:2.6.1.17 record includes the assertions that the enzyme uses the pyridoxal pyrophosphate cofactor, which is consistent with the pfam00155 family, and the assertion that the amino group donor is L-glutamate, which is undetermined for the sequences in this clade.

>PRK14807 histidinol-phosphate aminotransferase; Provisional

Probab=99.73  E-value=3.2e-15  Score=150.68  Aligned_cols=149  Identities=15%  Similarity=0.027  Sum_probs=111.6

Q ss_pred             cEEEeCcHHHHHHHHHHHHHHhcCCcccccCCCCCCCeEEEecCCCchHHHHHHHHhCCCCCcEEEEecCCCCCcCHHHH
Q psy14299          4 KPFLLPGGSISNMYSICLARYRLDPDTKRKGLSHLPPLCMFTSEDSHYSMLKAAHWLGIGMDNVIRVKTNERGQMICSFL   83 (448)
Q Consensus         4 ~g~~t~ggT~an~~al~~a~~~~~~~~~~~G~~~~~~~~Vl~~~~~H~s~~~~~~~~g~~~~~v~~v~~~~~g~id~e~L   83 (448)
                      ..++|+|+++++..++.+...              +++.|+++...+..+...++..|.   +++.++.++++.+|++++
T Consensus        78 ~i~it~G~~~~l~~~~~~l~~--------------~gd~Vlv~~p~y~~~~~~~~~~g~---~~~~v~~~~~~~~d~~~l  140 (351)
T PRK14807         78 NIFVGNGSDEIIHLIMLAFIN--------------KGDVVIYPHPSFAMYSVYSKIAGA---VEIPVKLKEDYTYDVGSF  140 (351)
T ss_pred             cEEEecCHHHHHHHHHHHhcC--------------CCCEEEEeCCChHHHHHHHHHcCC---eEEEeecCCCCCCCHHHH
Confidence            467899999987777665433              567788888888888888888888   788999887889999999


Q ss_pred             HHHHHHhhhcCCCcEEEEEeccCCccccccCHHHHHHHHHHcCCEEEEecccccccccccchhhhhcCCCCccEEEECCc
Q psy14299         84 EQTIQTSLAEKKIPLFVNATAGTTVLGAFDPLDEIATVCEKYDLWMHVDACWGGSLIFSEKYSFVLKGINRANSVSWNPH  163 (448)
Q Consensus        84 e~~l~~~~~~~~~~~lVv~~~~~t~tG~~~~l~~I~~ia~~~g~~l~VD~A~~~~~~~~~~~~~~~~~~~~aD~~~~s~h  163 (448)
                      ++++++     .++++|++++++|+||...+.+++.+++++++.++++|++|+...  ........... .--+++.|+.
T Consensus       141 ~~~~~~-----~~~k~v~l~~p~NPtG~~~~~~~l~~l~~~~~~~~ivDe~y~~~~--~~~~~~~~~~~-~~vi~~~S~S  212 (351)
T PRK14807        141 IKVIEK-----YQPKLVFLCNPNNPTGSVIEREDIIKIIEKSRGIVVVDEAYFEFY--GNTIVDVINEF-ENLIVLRTLS  212 (351)
T ss_pred             HHHhhc-----cCCCEEEEeCCCCCCCCCCCHHHHHHHHHhCCCEEEEeCcchhhc--ccchHHHhhhC-CCEEEEecch
Confidence            999864     257899999999999999999999999999999999999996431  11111111111 1236667889


Q ss_pred             cccCCC-CceEEEEE
Q psy14299        164 KMLGAP-LQCSILLI  177 (448)
Q Consensus       164 K~l~~P-~g~G~l~v  177 (448)
                      |.++.| .-+|+++.
T Consensus       213 K~~~~~GlRiG~~v~  227 (351)
T PRK14807        213 KAFGLAGLRVGYAVA  227 (351)
T ss_pred             Hhcccchhceeeeec
Confidence            998744 34566554

>PTZ00377 alanine aminotransferase; Provisional

Probab=99.73  E-value=4.7e-15  Score=155.76  Aligned_cols=120  Identities=15%  Similarity=0.104  Sum_probs=100.8

Q ss_pred             cEEEeCcHHHHHHHHHHHHHHhcCCcccccCCCCCCCeEEEecCCCchHHHHHHHHhCCCCCcEEEEecCC--CCCcCHH
Q psy14299          4 KPFLLPGGSISNMYSICLARYRLDPDTKRKGLSHLPPLCMFTSEDSHYSMLKAAHWLGIGMDNVIRVKTNE--RGQMICS   81 (448)
Q Consensus         4 ~g~~t~ggT~an~~al~~a~~~~~~~~~~~G~~~~~~~~Vl~~~~~H~s~~~~~~~~g~~~~~v~~v~~~~--~g~id~e   81 (448)
                      ..++|+|+++++.+++.+....             +++.|+++...+..+...++..|.   +++.++.++  ++.+|++
T Consensus       140 ~I~it~Ga~~al~~~~~~l~~~-------------~gD~Vlv~~P~y~~y~~~~~~~g~---~~v~v~~~~~~~~~~d~~  203 (481)
T PTZ00377        140 DIFLTDGASSGIKLLLQLLIGD-------------PSDGVMIPIPQYPLYSAAITLLGG---KQVPYYLDEEKGWSLDQE  203 (481)
T ss_pred             hEEEcCCHHHHHHHHHHHhccC-------------CCCEEEECCCCchhHHHHHHHcCC---EEEEEEeccccCCCCCHH
Confidence            4789999999988887766532             677899999999999999999998   788888864  3589999


Q ss_pred             HHHHHHHHhhhcCCCcEEEEEeccCCccccccC---HHHHHHHHHHcCCEEEEeccccccc
Q psy14299         82 FLEQTIQTSLAEKKIPLFVNATAGTTVLGAFDP---LDEIATVCEKYDLWMHVDACWGGSL  139 (448)
Q Consensus        82 ~Le~~l~~~~~~~~~~~lVv~~~~~t~tG~~~~---l~~I~~ia~~~g~~l~VD~A~~~~~  139 (448)
                      +|++++.+..+++.+++++++++++|+||.+.+   +++|+++|++||+++++|.+|.-..
T Consensus       204 ~l~~~l~~~~~~~~~~k~l~l~~P~NPTG~~~s~e~~~~i~~~a~~~~~~iI~De~Y~~l~  264 (481)
T PTZ00377        204 ELEEAYEQAVRNGITPRALVVINPGNPTGQVLTRDVMEEIIKFCYEKGIVLMADEVYQENI  264 (481)
T ss_pred             HHHHHHHHHHhcCCCeeEEEEECCCCCCCcCCCHHHHHHHHHHHHHCCCEEEEehhhHhhc
Confidence            999999764444446888889999999999988   8889999999999999999987543

>cd00614 CGS_like CGS_like: Cystathionine gamma-synthase is a PLP dependent enzyme and catalyzes the committed step of methionine biosynthesis

Probab=99.73  E-value=9e-16  Score=155.80  Aligned_cols=144  Identities=15%  Similarity=0.125  Sum_probs=112.1

Q ss_pred             cEEEeCcHHHHHHHHHHHHHHhcCCcccccCCCCCCCeEEEecCCCchHHHHH----HHHhCCCCCcEEEEecCCCCCcC
Q psy14299          4 KPFLLPGGSISNMYSICLARYRLDPDTKRKGLSHLPPLCMFTSEDSHYSMLKA----AHWLGIGMDNVIRVKTNERGQMI   79 (448)
Q Consensus         4 ~g~~t~ggT~an~~al~~a~~~~~~~~~~~G~~~~~~~~Vl~~~~~H~s~~~~----~~~~g~~~~~v~~v~~~~~g~id   79 (448)
                      .++++++|++||..++.+...              +++.|+++...|.+....    ++..|+   ++..++.+     |
T Consensus        57 ~a~~~~sG~~Ai~~~l~~l~~--------------~gd~Vl~~~~~y~~~~~~~~~~~~~~g~---~~~~v~~~-----d  114 (369)
T cd00614          57 AALAFSSGMAAISTVLLALLK--------------AGDHVVASDDLYGGTYRLFERLLPKLGI---EVTFVDPD-----D  114 (369)
T ss_pred             CEEEEcCHHHHHHHHHHHHcC--------------CCCEEEECCCCcchHHHHHHHHHhhcCe---EEEEeCCC-----C
Confidence            578899999999998877644              566788898888876543    344565   67777765     6


Q ss_pred             HHHHHHHHHHhhhcCCCcEEEEEeccCCccccccCHHHHHHHHHHcCCEEEEecccccccccccchhhhhcCCCCccEEE
Q psy14299         80 CSFLEQTIQTSLAEKKIPLFVNATAGTTVLGAFDPLDEIATVCEKYDLWMHVDACWGGSLIFSEKYSFVLKGINRANSVS  159 (448)
Q Consensus        80 ~e~Le~~l~~~~~~~~~~~lVv~~~~~t~tG~~~~l~~I~~ia~~~g~~l~VD~A~~~~~~~~~~~~~~~~~~~~aD~~~  159 (448)
                      ++++++++++      ++++|++.+++|++|.+.|+++|+++||+||++++||++++.+....+ .     .. ++|+++
T Consensus       115 ~~~l~~~i~~------~~~~v~~e~~~np~g~~~dl~~i~~la~~~g~~livD~t~~~~~~~~~-~-----~~-g~Divv  181 (369)
T cd00614         115 PEALEAAIKP------ETKLVYVESPTNPTLKVVDIEAIAELAHEHGALLVVDNTFATPYLQRP-L-----EL-GADIVV  181 (369)
T ss_pred             HHHHHHhcCC------CCeEEEEECCCCCCCeecCHHHHHHHHHHcCCEEEEECCCcchhcCCh-h-----hh-CCcEEE
Confidence            8999988854      578999999999999999999999999999999999999987654211 1     11 479999


Q ss_pred             ECCccccCCCCc--eEEEEEeccch
Q psy14299        160 WNPHKMLGAPLQ--CSILLIKEKGL  182 (448)
Q Consensus       160 ~s~hK~l~~P~g--~G~l~vr~~~~  182 (448)
                      .|.+|++++|..  .|+++.+++++
T Consensus       182 ~S~tK~l~g~~~~~gG~v~~~~~~l  206 (369)
T cd00614         182 HSATKYIGGHSDVIAGVVVGSGEAL  206 (369)
T ss_pred             eccceeccCCCCceEEEEEeCcHHH
Confidence            999999998753  56666655343

This pathway is unique to microorganisms and plants, rendering the enzyme an attractive target for the development of antimicrobials and herbicides. This subgroup also includes cystathionine gamma-lyases (CGL), O-acetylhomoserine sulfhydrylases and O-acetylhomoserine thiol lyases. CGL's are very similar to CGS's. Members of this group are widely distributed among all three forms of life.

>PRK05968 hypothetical protein; Provisional

Probab=99.72  E-value=8.3e-16  Score=157.03  Aligned_cols=144  Identities=10%  Similarity=0.079  Sum_probs=108.6

Q ss_pred             cEEEeCcHHHHHHHHHHHHHHhcCCcccccCCCCCCCeEEEecCCCchHHH----HHHHHhCCCCCcEEEEecCCCCCcC
Q psy14299          4 KPFLLPGGSISNMYSICLARYRLDPDTKRKGLSHLPPLCMFTSEDSHYSML----KAAHWLGIGMDNVIRVKTNERGQMI   79 (448)
Q Consensus         4 ~g~~t~ggT~an~~al~~a~~~~~~~~~~~G~~~~~~~~Vl~~~~~H~s~~----~~~~~~g~~~~~v~~v~~~~~g~id   79 (448)
                      ..+++++|++|+..++.+...              +++.|+++...|.+..    ..+...|+   ++..++.+     |
T Consensus        80 ~av~~~sG~~Ai~~al~al~~--------------~Gd~Vl~~~~~y~~t~~~~~~~~~~~G~---~v~~vd~~-----d  137 (389)
T PRK05968         80 DARGFASGMAAISSTVLSFVE--------------PGDRIVAVRHVYPDAFRLFETILKRMGV---EVDYVDGR-----D  137 (389)
T ss_pred             cEEEECCHHHHHHHHHHHHhC--------------CCCEEEEeCCCchHHHHHHHHHHHHcCc---eEEEeCCC-----C
Confidence            457788999998888765433              6677888888887643    45555677   67777654     8


Q ss_pred             HHHHHHHHHHhhhcCCCcEEEEEeccCCccccccCHHHHHHHHHHcCCEEEEecccccccccccchhhhhcCCCCccEEE
Q psy14299         80 CSFLEQTIQTSLAEKKIPLFVNATAGTTVLGAFDPLDEIATVCEKYDLWMHVDACWGGSLIFSEKYSFVLKGINRANSVS  159 (448)
Q Consensus        80 ~e~Le~~l~~~~~~~~~~~lVv~~~~~t~tG~~~~l~~I~~ia~~~g~~l~VD~A~~~~~~~~~~~~~~~~~~~~aD~~~  159 (448)
                      ++++++++.       ++++|.+.+++++++.+.|+++|+++||+||++++||++++.+....+ .   .   .++|+++
T Consensus       138 ~~~l~~~i~-------~tklV~ie~pt~~~~~~~dl~~i~~la~~~gi~vivD~a~a~~~~~~p-~---~---~g~Divv  203 (389)
T PRK05968        138 EEAVAKALP-------GAKLLYLESPTSWVFELQDVAALAALAKRHGVVTMIDNSWASPVFQRP-I---T---LGVDLVI  203 (389)
T ss_pred             HHHHHHhcc-------cCCEEEEECCCCCCCcHHHHHHHHHHHHHcCCEEEEECCCcchhccCc-h---h---cCCcEEE
Confidence            899998872       367999999999999999999999999999999999999987653211 1   1   1479999


Q ss_pred             ECCccccCCCCc--eEEEEEeccchhh
Q psy14299        160 WNPHKMLGAPLQ--CSILLIKEKGLLH  184 (448)
Q Consensus       160 ~s~hK~l~~P~g--~G~l~vr~~~~~~  184 (448)
                      .|++|++++|.+  .|+++. ++++..
T Consensus       204 ~S~tK~l~g~~~~~gG~i~~-~~~~~~  229 (389)
T PRK05968        204 HSASKYLGGHSDTVAGVVAG-SKEHIA  229 (389)
T ss_pred             eeccccccCCCCeEEEEEEE-CHHHHH
Confidence            999999999876  565554 444433

>PRK11658 UDP-4-amino-4-deoxy-L-arabinose--oxoglutarate aminotransferase; Provisional

Probab=99.72  E-value=1.2e-15  Score=155.52  Aligned_cols=151  Identities=14%  Similarity=0.123  Sum_probs=114.7

Q ss_pred             cEEEeCcHHHHHHHHHHHHHHhcCCcccccCCCCCCCeEEEecCCCchHHHHHHHHhCCCCCcEEEEecCCC-CCcCHHH
Q psy14299          4 KPFLLPGGSISNMYSICLARYRLDPDTKRKGLSHLPPLCMFTSEDSHYSMLKAAHWLGIGMDNVIRVKTNER-GQMICSF   82 (448)
Q Consensus         4 ~g~~t~ggT~an~~al~~a~~~~~~~~~~~G~~~~~~~~Vl~~~~~H~s~~~~~~~~g~~~~~v~~v~~~~~-g~id~e~   82 (448)
                      .+++|+|||+|+.+++.+..-             .+++.|+++..+|.+...++...|+   +++.++.+++ +.+|+++
T Consensus        50 ~~v~~~sgt~al~lal~al~~-------------~~Gd~Viv~~~~~~~~~~~~~~~G~---~~v~vd~~~~~~~~d~~~  113 (379)
T PRK11658         50 HAIAVSSATAGMHITLMALGI-------------GPGDEVITPSLTWVSTLNMIVLLGA---TPVMVDVDRDTLMVTPEA  113 (379)
T ss_pred             eEEEECCHHHHHHHHHHHcCC-------------CCCCEEEECCCcHHHHHHHHHHcCC---EEEEEecCCCcCCcCHHH
Confidence            468899999998888766421             2677899999999999999988888   7889998765 4799999


Q ss_pred             HHHHHHHhhhcCCCcEEEEEeccCCccccccCHHHHHHHHHHcCCEEEEecccccccccccchhhhhcCCCCccEEEECC
Q psy14299         83 LEQTIQTSLAEKKIPLFVNATAGTTVLGAFDPLDEIATVCEKYDLWMHVDACWGGSLIFSEKYSFVLKGINRANSVSWNP  162 (448)
Q Consensus        83 Le~~l~~~~~~~~~~~lVv~~~~~t~tG~~~~l~~I~~ia~~~g~~l~VD~A~~~~~~~~~~~~~~~~~~~~aD~~~~s~  162 (448)
                      +++++.+      ++++|+.++   ++|...|+++|.++|++||+++++|+||+.+.......   +... ..++++++.
T Consensus       114 l~~~i~~------~tkav~~~~---~~G~~~d~~~i~~~a~~~gi~vi~D~a~a~g~~~~~~~---~g~~-g~~~~Sf~~  180 (379)
T PRK11658        114 IEAAITP------RTKAIIPVH---YAGAPADLDAIRAIGERYGIPVIEDAAHAVGTYYKGRH---IGAR-GTAIFSFHA  180 (379)
T ss_pred             HHHhccc------CCeEEEEeC---CCCCcCCHHHHHHHHHHcCCeEEEECCCccCCeECCee---cCCC-CCEEEeCCC
Confidence            9999864      477877555   48999999999999999999999999999776543211   1112 347888899


Q ss_pred             ccccCCCCceEEEEEeccchhh
Q psy14299        163 HKMLGAPLQCSILLIKEKGLLH  184 (448)
Q Consensus       163 hK~l~~P~g~G~l~vr~~~~~~  184 (448)
                      +|++.++. .|+++.+++++..
T Consensus       181 ~K~l~~g~-GG~v~~~~~~~~~  201 (379)
T PRK11658        181 IKNITCAE-GGLVVTDDDELAD  201 (379)
T ss_pred             CCcCcccC-ceEEEECCHHHHH
Confidence            99987643 3444444455433

>PRK09265 aminotransferase AlaT; Validated

Probab=99.72  E-value=4.9e-15  Score=152.23  Aligned_cols=150  Identities=11%  Similarity=-0.020  Sum_probs=109.1

Q ss_pred             cEEEeCcHHHHHHHHHHHHHHhcCCcccccCCCCCCCeEEEecCCCchHHHHHHHHhCCCCCcEEEEecCC--CCCcCHH
Q psy14299          4 KPFLLPGGSISNMYSICLARYRLDPDTKRKGLSHLPPLCMFTSEDSHYSMLKAAHWLGIGMDNVIRVKTNE--RGQMICS   81 (448)
Q Consensus         4 ~g~~t~ggT~an~~al~~a~~~~~~~~~~~G~~~~~~~~Vl~~~~~H~s~~~~~~~~g~~~~~v~~v~~~~--~g~id~e   81 (448)
                      ..++|+|+++++.+++.+...              +++.|+++..+|..+...++..|.   +++.++.+.  ++.+|++
T Consensus        97 ~i~~t~G~~~~l~~~~~~~~~--------------~gd~Vlv~~p~y~~~~~~~~~~g~---~~v~~~~~~~~~~~~d~~  159 (404)
T PRK09265         97 DIYIGNGVSELIVMAMQALLN--------------NGDEVLVPAPDYPLWTAAVSLSGG---KPVHYLCDEEAGWFPDLD  159 (404)
T ss_pred             cEEEeCChHHHHHHHHHHhCC--------------CCCEEEEeCCCCcChHHHHHHcCC---EEEEEecccccCCCCCHH
Confidence            467899999988777765433              567788999999999999988887   677777653  4579999


Q ss_pred             HHHHHHHHhhhcCCCcEEEEEeccCCccccccC---HHHHHHHHHHcCCEEEEecccccccccccchhhhhcCC-CCccE
Q psy14299         82 FLEQTIQTSLAEKKIPLFVNATAGTTVLGAFDP---LDEIATVCEKYDLWMHVDACWGGSLIFSEKYSFVLKGI-NRANS  157 (448)
Q Consensus        82 ~Le~~l~~~~~~~~~~~lVv~~~~~t~tG~~~~---l~~I~~ia~~~g~~l~VD~A~~~~~~~~~~~~~~~~~~-~~aD~  157 (448)
                      ++++.+.+      ++++|++++++|+||.+.+   +++|.++|++||+++++|.+|............ +..+ ....+
T Consensus       160 ~l~~~~~~------~~~~v~l~~P~NPtG~~~~~~~~~~i~~~a~~~~~~ii~De~y~~~~~~~~~~~~-~~~~~~~~~v  232 (404)
T PRK09265        160 DIRSKITP------RTKAIVIINPNNPTGAVYSKELLEEIVEIARQHNLIIFADEIYDKILYDGAVHIS-IASLAPDLLC  232 (404)
T ss_pred             HHHHhccc------cceEEEEECCCCCCCcCCCHHHHHHHHHHHHHCCCEEEEehhhhhccCCCCCcCC-HHHcCCCceE
Confidence            99998854      4789999999999999988   899999999999999999998754321111000 1111 11224


Q ss_pred             E-EECCccccCCCC-ceEEEEE
Q psy14299        158 V-SWNPHKMLGAPL-QCSILLI  177 (448)
Q Consensus       158 ~-~~s~hK~l~~P~-g~G~l~v  177 (448)
                      + ..|+.|.++.|. -+|+++.
T Consensus       233 i~~~S~SK~~~~pGlRiG~~v~  254 (404)
T PRK09265        233 VTFNGLSKAYRVAGFRVGWMVL  254 (404)
T ss_pred             EEEecchhhccCcccceEEEEE
Confidence            4 456789987663 2677665

>PRK09082 methionine aminotransferase; Validated

Probab=99.72  E-value=9e-16  Score=156.72  Aligned_cols=151  Identities=10%  Similarity=0.000  Sum_probs=112.9

Q ss_pred             cEEEeCcHHHHHHHHHHHHHHhcCCcccccCCCCCCCeEEEecCCCchHHHHHHHHhCCCCCcEEEEecCC-CCCcCHHH
Q psy14299          4 KPFLLPGGSISNMYSICLARYRLDPDTKRKGLSHLPPLCMFTSEDSHYSMLKAAHWLGIGMDNVIRVKTNE-RGQMICSF   82 (448)
Q Consensus         4 ~g~~t~ggT~an~~al~~a~~~~~~~~~~~G~~~~~~~~Vl~~~~~H~s~~~~~~~~g~~~~~v~~v~~~~-~g~id~e~   82 (448)
                      ..++|+|+|+++..++.....              +++.|+++...|.++...++..|.   ++..++.++ ++.+|+++
T Consensus        93 ~i~~t~G~~~al~~~~~~~~~--------------~gd~Vli~~p~y~~~~~~~~~~g~---~~~~~~~~~~~~~~d~~~  155 (386)
T PRK09082         93 EITVTAGATEALFAAILALVR--------------PGDEVIVFDPSYDSYAPAIELAGG---RAVRVALQPPDFRVDWQR  155 (386)
T ss_pred             cEEEeCCHHHHHHHHHHHHcC--------------CCCEEEEeCCCchhhHHHHHHcCC---EEEEEecCcccccCCHHH
Confidence            488999999998888766543              567799999999999999999888   788999863 57899999


Q ss_pred             HHHHHHHhhhcCCCcEEEEEeccCCccccc---cCHHHHHHHHHHcCCEEEEecccccccccccchhh--hhcCCCCccE
Q psy14299         83 LEQTIQTSLAEKKIPLFVNATAGTTVLGAF---DPLDEIATVCEKYDLWMHVDACWGGSLIFSEKYSF--VLKGINRANS  157 (448)
Q Consensus        83 Le~~l~~~~~~~~~~~lVv~~~~~t~tG~~---~~l~~I~~ia~~~g~~l~VD~A~~~~~~~~~~~~~--~~~~~~~aD~  157 (448)
                      +++.+++      ++++|++++++|+||..   .++++|.++|++||+++++|.+|+...+.......  ...+...-.+
T Consensus       156 l~~~~~~------~~~~v~l~~p~NPtG~~~~~~~~~~i~~~a~~~~i~li~De~y~~~~~~~~~~~s~~~~~~~~~~~i  229 (386)
T PRK09082        156 FAAAISP------RTRLIILNTPHNPSGTVWSAADMRALWQLIAGTDIYVLSDEVYEHIVFDGAGHASVLRHPELRERAF  229 (386)
T ss_pred             HHHhcCc------cceEEEEeCCCCCCCcCCCHHHHHHHHHHHHHCCEEEEEehhhhhhccCCCCCCChhhCcCccCcEE
Confidence            9998854      47889999999999976   67899999999999999999998754432111000  0111112346


Q ss_pred             EEECCccccCCCC-ceEEEEE
Q psy14299        158 VSWNPHKMLGAPL-QCSILLI  177 (448)
Q Consensus       158 ~~~s~hK~l~~P~-g~G~l~v  177 (448)
                      +..|+.|.++.|. -+|+++.
T Consensus       230 ~~~S~SK~~~~~G~RiG~iv~  250 (386)
T PRK09082        230 VVSSFGKTYHVTGWKVGYCVA  250 (386)
T ss_pred             EEeechhhccchhhhhhhhhC
Confidence            6678888876553 3455554

>PRK07550 hypothetical protein; Provisional

Probab=99.72  E-value=3.2e-15  Score=152.57  Aligned_cols=153  Identities=8%  Similarity=-0.026  Sum_probs=111.0

Q ss_pred             cEEEeCcHHHHHHHHHHHHHHhcCCcccccCCCCCCCeEEEecCCCchHHHHHHHHhCCCCCcEEEEecCC--CCCcCHH
Q psy14299          4 KPFLLPGGSISNMYSICLARYRLDPDTKRKGLSHLPPLCMFTSEDSHYSMLKAAHWLGIGMDNVIRVKTNE--RGQMICS   81 (448)
Q Consensus         4 ~g~~t~ggT~an~~al~~a~~~~~~~~~~~G~~~~~~~~Vl~~~~~H~s~~~~~~~~g~~~~~v~~v~~~~--~g~id~e   81 (448)
                      ..++|+|+++++.+++.+...              +++.|+++...+......++..|+   +++.++.++  ++.+|++
T Consensus        92 ~i~~t~G~~~al~~~~~~l~~--------------~gd~Vlv~~p~y~~~~~~~~~~g~---~~~~v~~~~~~~~~~~~~  154 (386)
T PRK07550         92 QVHITSGCNQAFWAAMVTLAG--------------AGDEVILPLPWYFNHKMWLDMLGI---RPVYLPCDEGPGLLPDPA  154 (386)
T ss_pred             eEEEecCcHHHHHHHHHHhcC--------------CCCEEEEcCCCCcchHHHHHhcCC---EEEEEecCCCcCCCCCHH
Confidence            468899989998777666543              567799998888888888888888   788999864  4568999


Q ss_pred             HHHHHHHHhhhcCCCcEEEEEeccCCccccccC---HHHHHHHHHHcCCEEEEecccccccccccchhhhhcC--CCCcc
Q psy14299         82 FLEQTIQTSLAEKKIPLFVNATAGTTVLGAFDP---LDEIATVCEKYDLWMHVDACWGGSLIFSEKYSFVLKG--INRAN  156 (448)
Q Consensus        82 ~Le~~l~~~~~~~~~~~lVv~~~~~t~tG~~~~---l~~I~~ia~~~g~~l~VD~A~~~~~~~~~~~~~~~~~--~~~aD  156 (448)
                      ++++++++      ++++|++++++|+||...+   +++|+++|++||+++++|++|+...............  ...-.
T Consensus       155 ~l~~~~~~------~~~~v~~~~P~NPtG~~~~~~~~~~i~~~~~~~~~~iI~Dd~y~~~~~~~~~~~~~~~~~~~~~~~  228 (386)
T PRK07550        155 AAEALITP------RTRAIALVTPNNPTGVVYPPELLHELYDLARRHGIALILDETYRDFDSGGGAPHDLFADPDWDDTL  228 (386)
T ss_pred             HHHHHhcc------cCcEEEEeCCCCCCCcccCHHHHHHHHHHHHHcCeEEEEeccchhhccCCCCCcchhhCCCccccE
Confidence            99999965      4778888899999998876   7899999999999999999987542211000001110  01112


Q ss_pred             EEEECCccccCCC-CceEEEEEec
Q psy14299        157 SVSWNPHKMLGAP-LQCSILLIKE  179 (448)
Q Consensus       157 ~~~~s~hK~l~~P-~g~G~l~vr~  179 (448)
                      +++.|++|.++.| ..+|+++..+
T Consensus       229 i~~~S~SK~~g~~G~RiG~i~~~~  252 (386)
T PRK07550        229 VHLYSFSKSYALTGHRVGAVVASP  252 (386)
T ss_pred             EEEecchhhccCcccceEeeecCH
Confidence            5578999998755 3477776643

>PRK08134 O-acetylhomoserine aminocarboxypropyltransferase; Validated

Probab=99.72  E-value=4.3e-15  Score=153.38  Aligned_cols=140  Identities=13%  Similarity=0.039  Sum_probs=112.4

Q ss_pred             cEEEeCcHHHHHHHHHHHHHHhcCCcccccCCCCCCCeEEEecCCCchHHHHHHH----HhCCCCCcEEEEecCCCCCcC
Q psy14299          4 KPFLLPGGSISNMYSICLARYRLDPDTKRKGLSHLPPLCMFTSEDSHYSMLKAAH----WLGIGMDNVIRVKTNERGQMI   79 (448)
Q Consensus         4 ~g~~t~ggT~an~~al~~a~~~~~~~~~~~G~~~~~~~~Vl~~~~~H~s~~~~~~----~~g~~~~~v~~v~~~~~g~id   79 (448)
                      ..++|++||.|+.+++.....              +++.|+++...|.+......    ..|+   +++.++.+     |
T Consensus        81 ~av~~sSGt~Al~~al~~ll~--------------~Gd~Vi~~~~~y~~t~~~~~~~l~~~Gi---~v~~vd~~-----d  138 (433)
T PRK08134         81 GAIATASGQAALHLAIATLMG--------------AGSHIVASSALYGGSHNLLHYTLRRFGI---ETTFVKPG-----D  138 (433)
T ss_pred             cEEEeCCHHHHHHHHHHHHhC--------------CCCEEEEeCCccHHHHHHHHHHHhhCCe---EEEEECCC-----C
Confidence            468999999999888766532              56789999999987655543    3466   67777764     8


Q ss_pred             HHHHHHHHHHhhhcCCCcEEEEEeccCCccccccCHHHHHHHHHHcCCEEEEecccccccccccchhhhhcCCCCccEEE
Q psy14299         80 CSFLEQTIQTSLAEKKIPLFVNATAGTTVLGAFDPLDEIATVCEKYDLWMHVDACWGGSLIFSEKYSFVLKGINRANSVS  159 (448)
Q Consensus        80 ~e~Le~~l~~~~~~~~~~~lVv~~~~~t~tG~~~~l~~I~~ia~~~g~~l~VD~A~~~~~~~~~~~~~~~~~~~~aD~~~  159 (448)
                      +++++++|++      ++++|+++++++++|.+.|+++|+++||+||++++||++|+.+....+.      .+ ++|+++
T Consensus       139 ~~~l~~~i~~------~TklV~~e~~~np~g~v~Di~~I~~la~~~gi~livD~t~a~~~~~~pl------~~-GaD~vv  205 (433)
T PRK08134        139 IDGWRAAIRP------NTRLLFGETLGNPGLEVLDIPTVAAIAHEAGVPLLVDSTFTTPYLLRPF------EH-GADLVY  205 (433)
T ss_pred             HHHHHHhcCC------CCeEEEEECCCcccCcccCHHHHHHHHHHcCCEEEEECCCcccccCCch------hc-CCCEEE
Confidence            9999999965      5899999999999999999999999999999999999999887763321      11 589999


Q ss_pred             ECCccccCCCCc-eEEEEEe
Q psy14299        160 WNPHKMLGAPLQ-CSILLIK  178 (448)
Q Consensus       160 ~s~hK~l~~P~g-~G~l~vr  178 (448)
                      +|+|||+++|.. .|.+++.
T Consensus       206 ~S~tK~l~g~g~~~gG~v~~  225 (433)
T PRK08134        206 HSATKFLGGHGTAIGGVLVD  225 (433)
T ss_pred             eccccccCCCCCceEEEEEe
Confidence            999999987753 5556554

>PRK08114 cystathionine beta-lyase; Provisional

Probab=99.71  E-value=3.1e-15  Score=151.96  Aligned_cols=141  Identities=11%  Similarity=0.065  Sum_probs=112.8

Q ss_pred             cEEEeCcHHHHHHHHHHHHHHhcCCcccccCCCCCCCeEEEecCCCchHHHHHH----HHhCCCCCcEEEEecCCCCCcC
Q psy14299          4 KPFLLPGGSISNMYSICLARYRLDPDTKRKGLSHLPPLCMFTSEDSHYSMLKAA----HWLGIGMDNVIRVKTNERGQMI   79 (448)
Q Consensus         4 ~g~~t~ggT~an~~al~~a~~~~~~~~~~~G~~~~~~~~Vl~~~~~H~s~~~~~----~~~g~~~~~v~~v~~~~~g~id   79 (448)
                      .++++++|+.|+..++....+              +++.|+++...|......+    +..|+   ++..++..     |
T Consensus        79 ~a~~~~SGmaAi~~~~~~ll~--------------~GD~Vv~~~~~Yg~t~~l~~~~l~~~Gi---~v~~vd~~-----d  136 (395)
T PRK08114         79 GCALYPCGAAAVANAILAFVE--------------QGDHVLMTGTAYEPTQDFCSKILSKLGV---TTTWFDPL-----I  136 (395)
T ss_pred             eEEEEhHHHHHHHHHHHHHcC--------------CCCEEEEeCCCcHHHHHHHHHHHHhcCc---EEEEECCC-----C
Confidence            578889999998887765533              6678889888988777665    33466   67777753     7


Q ss_pred             HHHHHHHHHHhhhcCCCcEEEEEeccCCccccccCHHHHHHHHHHcC--CEEEEecccccccccccchhhhhcCCCCccE
Q psy14299         80 CSFLEQTIQTSLAEKKIPLFVNATAGTTVLGAFDPLDEIATVCEKYD--LWMHVDACWGGSLIFSEKYSFVLKGINRANS  157 (448)
Q Consensus        80 ~e~Le~~l~~~~~~~~~~~lVv~~~~~t~tG~~~~l~~I~~ia~~~g--~~l~VD~A~~~~~~~~~~~~~~~~~~~~aD~  157 (448)
                      +++++++|++      ++++|.+.+++|++|.+.||++|+++||++|  ++++||++++.+.. .+....      ++|+
T Consensus       137 ~~~l~~~l~~------~TrlV~~EtpsNp~~~v~DI~~Ia~ia~~~g~g~~lvVDnT~a~p~~-~~pl~~------GaDi  203 (395)
T PRK08114        137 GADIAKLIQP------NTKVVFLESPGSITMEVHDVPAIVAAVRSVNPDAVIMIDNTWAAGVL-FKALDF------GIDI  203 (395)
T ss_pred             HHHHHHhcCC------CceEEEEECCCCCCCEeecHHHHHHHHHHhCCCCEEEEECCCccccc-cCHHHc------CCcE
Confidence            8999999864      5899999999999999999999999999985  99999999998766 333221      5899


Q ss_pred             EEECCccccCCCC--ceEEEEEec
Q psy14299        158 VSWNPHKMLGAPL--QCSILLIKE  179 (448)
Q Consensus       158 ~~~s~hK~l~~P~--g~G~l~vr~  179 (448)
                      ++.|.|||+++|.  +.|+++.++
T Consensus       204 vv~S~tKyl~Ghsdv~~G~v~~~~  227 (395)
T PRK08114        204 SIQAGTKYLVGHSDAMIGTAVANA  227 (395)
T ss_pred             EEEcCcccccCCCcceeEEEEcCH
Confidence            9999999999996  677665443

>PRK03244 argD acetylornithine aminotransferase; Provisional

Probab=99.71  E-value=5.9e-15  Score=151.25  Aligned_cols=151  Identities=17%  Similarity=0.098  Sum_probs=103.2

Q ss_pred             cEEEeCcHHHHHHHHHHHHHHhcCCcccccCCCCCCCeEEEecCCCchHHHHHHHHhCCCC---------CcEEEEecCC
Q psy14299          4 KPFLLPGGSISNMYSICLARYRLDPDTKRKGLSHLPPLCMFTSEDSHYSMLKAAHWLGIGM---------DNVIRVKTNE   74 (448)
Q Consensus         4 ~g~~t~ggT~an~~al~~a~~~~~~~~~~~G~~~~~~~~Vl~~~~~H~s~~~~~~~~g~~~---------~~v~~v~~~~   74 (448)
                      .++|++||+++|..++..++..            ..+.+|.+....|.+...+....|...         .++..+|.  
T Consensus       105 ~v~~~~sgsea~~~al~~~~~~------------g~~~ii~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--  170 (398)
T PRK03244        105 RVFFCNSGAEANEAAFKLARLT------------GRTKIVAAEGGFHGRTMGALALTGQPAKRAPFEPLPGGVEHVPY--  170 (398)
T ss_pred             EEEEeCchHHHHHHHHHHHHHH------------CCCeEEEECCCcCCccHHHHhccCCcccccCCCCCCCCceEeCC--
Confidence            5899999999999999988764            134456665666666555554443210         12333443  


Q ss_pred             CCCcCHHHHHHHHHHhhhcCCCcEEEEEeccCCccccccC----HHHHHHHHHHcCCEEEEecccccccccccchhhhhc
Q psy14299         75 RGQMICSFLEQTIQTSLAEKKIPLFVNATAGTTVLGAFDP----LDEIATVCEKYDLWMHVDACWGGSLIFSEKYSFVLK  150 (448)
Q Consensus        75 ~g~id~e~Le~~l~~~~~~~~~~~lVv~~~~~t~tG~~~~----l~~I~~ia~~~g~~l~VD~A~~~~~~~~~~~~~~~~  150 (448)
                         .|++++++.+.+      ++.+|++..+.+++|.+.|    +++|.++|++||+++++|++|++.-.....+.....
T Consensus       171 ---~d~~~l~~~~~~------~~~aviiep~~~~~G~~~~~~~~l~~l~~l~~~~~~llI~DEv~~g~gr~g~~~~~~~~  241 (398)
T PRK03244        171 ---GDVDALAAAVDD------DTAAVFLEPIQGEAGVVPPPAGYLAAAREITDRHGALLVLDEVQTGIGRTGAWFAHQHD  241 (398)
T ss_pred             ---CCHHHHHHhhcC------CeEEEEEecccCCCCCcCCCHHHHHHHHHHHHHcCCEEEEeccccCCcccchHHhhhhh
Confidence               278999988742      4788999999999999887    899999999999999999998742111110111112


Q ss_pred             CCCCccEEEECCccccCCCCceEEEEEecc
Q psy14299        151 GINRANSVSWNPHKMLGAPLQCSILLIKEK  180 (448)
Q Consensus       151 ~~~~aD~~~~s~hK~l~~P~g~G~l~vr~~  180 (448)
                      ++ ..|++++  .|++++...+|.++.+++
T Consensus       242 ~~-~pDi~t~--sK~l~~G~~ig~~~~~~~  268 (398)
T PRK03244        242 GV-TPDVVTL--AKGLGGGLPIGACLAFGP  268 (398)
T ss_pred             CC-CCCEEEE--chhhhCCcccEEEEEcHH
Confidence            33 3577665  699986667888887654

>PRK06767 methionine gamma-lyase; Provisional

Probab=99.71  E-value=1.8e-15  Score=154.40  Aligned_cols=145  Identities=10%  Similarity=0.013  Sum_probs=107.1

Q ss_pred             cEEEeCcHHHHHHHHHHHHHHhcCCcccccCCCCCCCeEEEecCCCchHHHHHHHHhCC-CCCcEEEEecCCCCCcCHHH
Q psy14299          4 KPFLLPGGSISNMYSICLARYRLDPDTKRKGLSHLPPLCMFTSEDSHYSMLKAAHWLGI-GMDNVIRVKTNERGQMICSF   82 (448)
Q Consensus         4 ~g~~t~ggT~an~~al~~a~~~~~~~~~~~G~~~~~~~~Vl~~~~~H~s~~~~~~~~g~-~~~~v~~v~~~~~g~id~e~   82 (448)
                      ..+++++|+.++..++.+...              +++.|+++...|............ ....+..++.     .|+++
T Consensus        78 ~al~~~sG~~Ai~~~l~al~~--------------~Gd~Vv~~~~~y~~~~~~~~~~~~~~gi~~~~~~~-----~d~~~  138 (386)
T PRK06767         78 EALAFGSGMAAISATLIGFLK--------------AGDHIICSNGLYGCTYGFLEVLEEKFMITHSFCDM-----ETEAD  138 (386)
T ss_pred             cEEEECCHHHHHHHHHHHHhC--------------CCCEEEEcCCcHHHHHHHHHHHHhhcCeEEEEeCC-----CCHHH
Confidence            468889999887777655543              667888998888776655543321 0113444433     38899


Q ss_pred             HHHHHHHhhhcCCCcEEEEEeccCCccccccCHHHHHHHHHHcCCEEEEecccccccccccchhhhhcCCCCccEEEECC
Q psy14299         83 LEQTIQTSLAEKKIPLFVNATAGTTVLGAFDPLDEIATVCEKYDLWMHVDACWGGSLIFSEKYSFVLKGINRANSVSWNP  162 (448)
Q Consensus        83 Le~~l~~~~~~~~~~~lVv~~~~~t~tG~~~~l~~I~~ia~~~g~~l~VD~A~~~~~~~~~~~~~~~~~~~~aD~~~~s~  162 (448)
                      +++++++      ++++|++++++|++|.+.|+++|.++||++|++++||+||+.+....+.     .  .++|+++.|+
T Consensus       139 l~~~i~~------~tklV~lesp~NptG~v~dl~~I~~la~~~g~~vivD~a~a~~~~~~pl-----~--~g~Div~~S~  205 (386)
T PRK06767        139 IENKIRP------NTKLIFVETPINPTMKLIDLKQVIRVAKRNGLLVIVDNTFCSPYLQRPL-----E--LGCDAVVHSA  205 (386)
T ss_pred             HHHhhCc------CceEEEEeCCCCCCceecCHHHHHHHHHHcCCEEEEECCCcccccCCch-----h--cCCcEEEecC
Confidence            9988854      4789999999999999999999999999999999999999765442221     1  2579999999


Q ss_pred             ccccCCCCc--eEEEEEecc
Q psy14299        163 HKMLGAPLQ--CSILLIKEK  180 (448)
Q Consensus       163 hK~l~~P~g--~G~l~vr~~  180 (448)
                      +|+++++..  .|+++.+++
T Consensus       206 sK~l~g~g~~~gG~v~~~~~  225 (386)
T PRK06767        206 TKYIGGHGDVVAGVTICKTR  225 (386)
T ss_pred             cceecCCCCceeEEEEeChH
Confidence            999998876  466666543

>PF00155 Aminotran_1_2: Aminotransferase class I and II 1-aminocyclopropane-1-carboxylate synthase signature aspartate aminotransferase signature; InterPro: IPR004839 Aminotransferases share certain mechanistic features with other pyridoxal-phosphate dependent enzymes, such as the covalent binding of the pyridoxal-phosphate group to a lysine residue

Probab=99.71  E-value=1.2e-15  Score=153.98  Aligned_cols=261  Identities=14%  Similarity=0.175  Sum_probs=172.3

Q ss_pred             CCeEEEecCCCchHHHHHHHHhCCCCCcEEEEecC--CCCCcCHHHHHHHHHHhhhcCCCcEEEEEeccCCccccccCHH
Q psy14299         39 PPLCMFTSEDSHYSMLKAAHWLGIGMDNVIRVKTN--ERGQMICSFLEQTIQTSLAEKKIPLFVNATAGTTVLGAFDPLD  116 (448)
Q Consensus        39 ~~~~Vl~~~~~H~s~~~~~~~~g~~~~~v~~v~~~--~~g~id~e~Le~~l~~~~~~~~~~~lVv~~~~~t~tG~~~~l~  116 (448)
                      +++.|+++...|..+...++..|.   .++.++.+  .++.+|+++|++.+++....+.++++|+++.++|+||...+.+
T Consensus        92 ~~~~vlv~~P~y~~~~~~~~~~g~---~~~~~~~~~~~~~~~d~~~l~~~l~~~~~~~~~~~~v~~~~p~nPtG~~~~~~  168 (363)
T PF00155_consen   92 PGDTVLVPDPCYPSYIEAARLLGA---EVIPVPLDSENDFHLDPEALEEALDELPSKGPRPKAVLICNPNNPTGSVLSLE  168 (363)
T ss_dssp             TTSEEEEEESSSTHHHHHHHHTTS---EEEEEEEEETTTTEETHHHHHHHHHTSHTTTETEEEEEEESSBTTTTBB--HH
T ss_pred             ccccceecCCccccccccccccCc---eeeeccccccccccccccccccccccccccccccceeeecccccccccccccc
Confidence            567799999999999999999999   68888854  6789999999999988544433578999999999999886655


Q ss_pred             H---HHHHHHHcCCEEEEecccccccccccch---hhhhcCCCCc-cEEEECCccccCCCC-ceEEEEEeccchhhhhcc
Q psy14299        117 E---IATVCEKYDLWMHVDACWGGSLIFSEKY---SFVLKGINRA-NSVSWNPHKMLGAPL-QCSILLIKEKGLLHQANA  188 (448)
Q Consensus       117 ~---I~~ia~~~g~~l~VD~A~~~~~~~~~~~---~~~~~~~~~a-D~~~~s~hK~l~~P~-g~G~l~vr~~~~~~~~~~  188 (448)
                      +   |+++|++||+++++|.+|+.........   ...+..  .. -+++.|+.|.++.|. -.|++++ ++.+......
T Consensus       169 ~l~~l~~~~~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~--~~~vi~~~S~SK~~g~~GlRvG~i~~-~~~~~~~l~~  245 (363)
T PF00155_consen  169 ELRELAELAREYNIIIIVDEAYSDLIFGDPDFGPIRSLLDE--DDNVIVVGSLSKSFGLPGLRVGYIVA-PPELIERLRR  245 (363)
T ss_dssp             HHHHHHHHHHHTTSEEEEEETTTTGBSSSSHTHHHHGHHTT--TSTEEEEEESTTTTTSGGGTEEEEEE-EHHHHHHHHH
T ss_pred             cccchhhhhcccccceeeeeceeccccCCCccCcccccccc--cccceeeeeccccccccccccccccc-hhhhhhhhhh
Confidence            5   5555999999999999999877642211   111221  12 377789999998763 5788777 4444333221


Q ss_pred             CCcccccccCcccccccCCCCCcccCCCCchhHHHHHHHHHhChHHHHHHHHHhhhhccCCCccchhhhhhhhhhhhhhh
Q psy14299        189 TAATYLFQQDKFYDVSFDTGDKSVQCGRKVDAFKLWLMWKARGNLGFRHFVDNAVDCSRGSMTFSTLLCFDLQGLLHQAN  268 (448)
Q Consensus       189 ~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~g~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  268 (448)
                      ....+..                       ......++...+...+.                                 
T Consensus       246 ~~~~~~~-----------------------~~~~~~~~~~~l~~~~~---------------------------------  269 (363)
T PF00155_consen  246 FQRSGLS-----------------------SSPMQAAAAAALSDPEL---------------------------------  269 (363)
T ss_dssp             HHHHTTS-----------------------SHHHHHHHHHHHHHHHH---------------------------------
T ss_pred             ccccccc-----------------------cchhhHHHHHhhhcccc---------------------------------
Confidence            1111110                       00000001111100000                                 


Q ss_pred             hhhhhhhhccccccccccCCCCCccccccchhhHHHHHHHHHhcCccHHHHHHHHHHHHHHHHHHhhcCCCeEEeccCCc
Q psy14299        269 ATAATYLFQQDKFYDVSFDTGDKSVQCGRKVDAFKLWLMWKARGNLGFRHFVDNAVDCSRYFLSQISQRPGFRLVIPEFQ  348 (448)
Q Consensus       269 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~~l~~~~~~~L~~~pg~~l~~~~~~  348 (448)
                                                                 -..-++++.++..+.++++.+.|+++ |+.+. . +.
T Consensus       270 -------------------------------------------~~~~~~~~~~~l~~~~~~l~~~L~~~-~~~~~-~-~~  303 (363)
T PF00155_consen  270 -------------------------------------------VEKWLEELRERLRENRDLLREALEEI-GITVL-P-PE  303 (363)
T ss_dssp             -------------------------------------------HHHHHHHHHHHHHHHHHHHHHHHHHT-TSEEE-H-HS
T ss_pred             -------------------------------------------cccccccchhhHHHHHHHHHHHHHHh-hhhee-e-cc
Confidence                                                       00135567788888999999999998 99987 3 33


Q ss_pred             eeeEEEEeeccCCCccccchhhhhhhhhhhHHHHHHHHhC-CcEEEEeeecCCcccccEEEEEecCCCCCCHHHHHHHHH
Q psy14299        349 CTNICFWFIPVSLRDKVEDETWWSTLSKVAPRIKEKLVLG-GTLMIGYQPLQHRNLHNFFRLVTTCHPASSRQDMDYAID  427 (448)
Q Consensus       349 ~~~v~f~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~L~~~-g~~~~~~~~~~g~~~~~~lRis~~~~~~~t~edid~l~~  427 (448)
                      .+.+.+...+..                ...++.+.|.++ | +.+.++...+.  ++++|+++.   ..++++++++++
T Consensus       304 ~~~~~~~~~~~~----------------~~~~l~~~L~~~~g-i~v~pg~~~~~--~~~iRi~~a---~~~~e~~~~~~~  361 (363)
T PF00155_consen  304 AGFFLWVRLDPN----------------DAEELAQELLEEYG-ILVRPGSYFGV--PGYIRISLA---SHSEEDLEEALE  361 (363)
T ss_dssp             BSSEEEEEESHH----------------HHHHHHHHHHHHHT-EEEEEGGGGTS--TTEEEEEGG---CSCHHHHHHHHH
T ss_pred             CccEEEEEcccc----------------hHHHHHHHHHHhCC-EEEEecCCCCC--CCEEEEEec---cCCHHHHHHHHh
Confidence            666666432211                134788889998 8 55555544443  589999993   579999999998


Q ss_pred             HH
Q psy14299        428 QI  429 (448)
Q Consensus       428 al  429 (448)
                      +|
T Consensus       362 ~l  363 (363)
T PF00155_consen  362 RL  363 (363)
T ss_dssp             HH
T ss_pred             hC
Confidence            76

On the basis of sequence similarity, these various enzymes can be grouped [] into class I and class II. This entry includes proteins from both subfamilies.; GO: 0016769 transferase activity, transferring nitrogenous groups, 0030170 pyridoxal phosphate binding, 0009058 biosynthetic process; PDB: 3NRA_B 3P6K_B 3OP7_A 3ASB_A 3ASA_A 1W7M_A 3FVX_A 1W7N_A 3FVU_B 3FVS_A ....

>TIGR03540 DapC_direct LL-diaminopimelate aminotransferase

Probab=99.71  E-value=3.6e-15  Score=152.02  Aligned_cols=154  Identities=10%  Similarity=0.030  Sum_probs=111.7

Q ss_pred             EEEeCcHHHHHHHHHHHHHHhcCCcccccCCCCCCCeEEEecCCCchHHHHHHHHhCCCCCcEEEEecCCC--CCcCHHH
Q psy14299          5 PFLLPGGSISNMYSICLARYRLDPDTKRKGLSHLPPLCMFTSEDSHYSMLKAAHWLGIGMDNVIRVKTNER--GQMICSF   82 (448)
Q Consensus         5 g~~t~ggT~an~~al~~a~~~~~~~~~~~G~~~~~~~~Vl~~~~~H~s~~~~~~~~g~~~~~v~~v~~~~~--g~id~e~   82 (448)
                      .++|+|+++++..++.....              +++.|+++...+..+...++..|.   ++..+|.+++  ..+|+++
T Consensus        94 vi~t~G~~~~l~~~~~~~~~--------------~gd~vlv~~P~y~~~~~~~~~~G~---~v~~v~~~~~~g~~~d~~~  156 (383)
T TIGR03540        94 VLSLIGSKEGIAHIPLAFVN--------------PGDIVLVPDPGYPVYRIGTLFAGG---EPYEMPLKEENGFLPDFDA  156 (383)
T ss_pred             EEECCCcHHHHHHHHHHhCC--------------CCCEEEEeCCCCcchHHHHHhcCC---EEEEEecCcccCCccCHHH
Confidence            67889999998777665433              567899999999988888888898   7889998643  4679999


Q ss_pred             HHHHHHHhhhcCCCcEEEEEeccCCccccccC---HHHHHHHHHHcCCEEEEecccccccccccchhh--hhcCCCCccE
Q psy14299         83 LEQTIQTSLAEKKIPLFVNATAGTTVLGAFDP---LDEIATVCEKYDLWMHVDACWGGSLIFSEKYSF--VLKGINRANS  157 (448)
Q Consensus        83 Le~~l~~~~~~~~~~~lVv~~~~~t~tG~~~~---l~~I~~ia~~~g~~l~VD~A~~~~~~~~~~~~~--~~~~~~~aD~  157 (448)
                      +++.+.+      ++++|++++++|+||...+   +++|.++|++||+++++|++|+-..........  .+.+.....+
T Consensus       157 l~~~~~~------~~~~v~i~~P~NPtG~~~~~~~~~~i~~~a~~~~~~ii~De~y~~l~~~~~~~~~~~~~~~~~~~~i  230 (383)
T TIGR03540       157 IPEDIAK------KAKLMFINYPNNPTGAVAPLKFFKELVEFAKEYNIIVCHDNAYSEITFDGYKAPSFLEVDGAKDVGI  230 (383)
T ss_pred             HHhhccc------cceEEEEeCCCCCcCccCCHHHHHHHHHHHHHcCEEEEEecchhhhccCCCCCcCcccCCCcccCEE
Confidence            9988854      4789999999999999888   788999999999999999998754321100000  0111111235


Q ss_pred             EEECCccccCCCCc--eEEEEEeccchh
Q psy14299        158 VSWNPHKMLGAPLQ--CSILLIKEKGLL  183 (448)
Q Consensus       158 ~~~s~hK~l~~P~g--~G~l~vr~~~~~  183 (448)
                      ...++.|.++.| |  +|+++. ++++.
T Consensus       231 ~~~SfSK~~g~~-GlRiG~~i~-~~~l~  256 (383)
T TIGR03540       231 EFHSLSKTYNMT-GWRIGMAVG-NADLI  256 (383)
T ss_pred             EEEecccccCCc-cceeeEEeC-CHHHH
Confidence            667888988644 4  677655 43333

This clade of the pfam00155 superfamily of aminotransferases includes several which are adjacent to elements of the lysine biosynthesis via diaminopimelate pathway (GenProp0125). Every member of this clade is from a genome which possesses most of the lysine biosynthesis pathway but lacks any of the known aminotransferases, succinylases, desuccinylases, acetylases or deacetylases typical of the acylated versions of this pathway nor do they have the direct, NADPH-dependent enzyme (ddh). Although there is no experimental characterization of any of the sequences in this clade, a direct pathway is known in plants and Chlamydia, so it seems quite reasonable that these enzymes catalyze the same transformation.

>PRK08912 hypothetical protein; Provisional

Probab=99.71  E-value=4.4e-15  Score=151.64  Aligned_cols=153  Identities=12%  Similarity=0.056  Sum_probs=115.0

Q ss_pred             cEEEeCcHHHHHHHHHHHHHHhcCCcccccCCCCCCCeEEEecCCCchHHHHHHHHhCCCCCcEEEEecCC-CCCcCHHH
Q psy14299          4 KPFLLPGGSISNMYSICLARYRLDPDTKRKGLSHLPPLCMFTSEDSHYSMLKAAHWLGIGMDNVIRVKTNE-RGQMICSF   82 (448)
Q Consensus         4 ~g~~t~ggT~an~~al~~a~~~~~~~~~~~G~~~~~~~~Vl~~~~~H~s~~~~~~~~g~~~~~v~~v~~~~-~g~id~e~   82 (448)
                      ..++|+|+++++..++.....              +++.|+++...|..+...++..|.   +++.++.++ ++.+|+++
T Consensus        89 ~i~~t~G~~~al~~~~~~~~~--------------~gd~Vlv~~p~y~~~~~~~~~~g~---~~~~~~~~~~~~~~~~~~  151 (387)
T PRK08912         89 EVMVTSGATEALAAALLALVE--------------PGDEVVLFQPLYDAYLPLIRRAGG---VPRLVRLEPPHWRLPRAA  151 (387)
T ss_pred             cEEEeCCcHHHHHHHHHHhcC--------------CCCEEEEeCCCchhhHHHHHHcCC---EEEEEecCcccCcCCHHH
Confidence            578999999998766655433              567789999999999999999998   788888864 57899999


Q ss_pred             HHHHHHHhhhcCCCcEEEEEeccCCccccccC---HHHHHHHHHHcCCEEEEecccccccccccchhh--hhcCCCCccE
Q psy14299         83 LEQTIQTSLAEKKIPLFVNATAGTTVLGAFDP---LDEIATVCEKYDLWMHVDACWGGSLIFSEKYSF--VLKGINRANS  157 (448)
Q Consensus        83 Le~~l~~~~~~~~~~~lVv~~~~~t~tG~~~~---l~~I~~ia~~~g~~l~VD~A~~~~~~~~~~~~~--~~~~~~~aD~  157 (448)
                      +++.+.+      ++++|++++++|+||.+.+   +++|.++|++|++++++|.+|+...........  ...+....++
T Consensus       152 l~~~~~~------~~~~v~l~~p~NPtG~~~s~~~~~~i~~~~~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~~~i  225 (387)
T PRK08912        152 LAAAFSP------RTKAVLLNNPLNPAGKVFPREELALLAEFCQRHDAVAICDEVWEHVVFDGRRHIPLMTLPGMRERTV  225 (387)
T ss_pred             HHHHhCc------cceEEEEeCCCCCcCcccCHHHHHHHHHHHHHCCeEEEEhhhhhhcccCCCCCcChhhCCCccCceE
Confidence            9998853      4788999999999998876   777999999999999999998754331111011  1112223468


Q ss_pred             EEECCccccCCC-CceEEEEEec
Q psy14299        158 VSWNPHKMLGAP-LQCSILLIKE  179 (448)
Q Consensus       158 ~~~s~hK~l~~P-~g~G~l~vr~  179 (448)
                      ++.|++|.++.| .-+|+++..+
T Consensus       226 ~~~S~SK~~g~~GlRiG~~~~~~  248 (387)
T PRK08912        226 KIGSAGKIFSLTGWKVGFVCAAP  248 (387)
T ss_pred             EEeechhhccCcCceeEEEecCH
Confidence            889999988744 2378777643

>PLN02452 phosphoserine transaminase

Probab=99.71  E-value=1.2e-15  Score=153.82  Aligned_cols=251  Identities=12%  Similarity=0.098  Sum_probs=164.0

Q ss_pred             CCchH--HHHHHHHhCCCCCcEEEEecCCCC---CcCHHHHHHHHHHhhhcCCCcEEEEEeccCCcccc-ccCHHHHHHH
Q psy14299         48 DSHYS--MLKAAHWLGIGMDNVIRVKTNERG---QMICSFLEQTIQTSLAEKKIPLFVNATAGTTVLGA-FDPLDEIATV  121 (448)
Q Consensus        48 ~~H~s--~~~~~~~~g~~~~~v~~v~~~~~g---~id~e~Le~~l~~~~~~~~~~~lVv~~~~~t~tG~-~~~l~~I~~i  121 (448)
                      ..+++  +.+.++..|.   ..+.....+..   .++++++    +.    ......|.++|++|.+|+ +.|++++++ 
T Consensus       103 ~G~fg~r~~~~a~~~g~---~~~~~~~~~~~~~~~~~~~~~----~~----~~~~~~v~~~hnETstGv~~~~~~~i~~-  170 (365)
T PLN02452        103 TGSWSKKAAKEAKKYCK---TNVIASGKDEKYTKIPSVSEW----EL----TPDAKFVHICANETIHGVEFKDYPDVGN-  170 (365)
T ss_pred             CCHHHHHHHHHHHHhCC---CcEEEecCCCCCCCCCChHHc----CC----CCCCcEEEECCCCCCCcEecCcccccCC-
Confidence            45554  4566666665   22222222222   4566664    21    234779999999999999 599988863 


Q ss_pred             HHHcCCEEEEecccccccccccchhhhhcCCCCccEEEECCccccCCCCceEEEEEeccchhhhhccCCcccccccCccc
Q psy14299        122 CEKYDLWMHVDACWGGSLIFSEKYSFVLKGINRANSVSWNPHKMLGAPLQCSILLIKEKGLLHQANATAATYLFQQDKFY  201 (448)
Q Consensus       122 a~~~g~~l~VD~A~~~~~~~~~~~~~~~~~~~~aD~~~~s~hK~l~~P~g~G~l~vr~~~~~~~~~~~~~~y~~~~~~~~  201 (448)
                           +.++||++++++..+++....        ++...++||+++ |+|.|++++|++. +.......+.|+....   
T Consensus       171 -----~~lvVDa~Ss~g~~pidv~~~--------~v~~~saqK~lG-P~Gl~~v~vr~~~-l~~~~~~~~~~~~~~~---  232 (365)
T PLN02452        171 -----VPLVADMSSNFLSKPVDVSKY--------GVIYAGAQKNVG-PSGVTIVIIRKDL-IGNARPITPGMLDYKI---  232 (365)
T ss_pred             -----CeEEEECCccccCcccCHHHc--------CEEEEecccccC-CCCeEEEEEcHHH-HhhcccCCCchhhHHH---
Confidence                 899999999999987764332        344479999995 9999999998864 3332221222221000   


Q ss_pred             ccccCCCCCcccCCCCchhHHHHHHHHHhChHHHHHHHHHhhhhccCCCccchhhhhhhhhhhhhhhhhhhhhhhccccc
Q psy14299        202 DVSFDTGDKSVQCGRKVDAFKLWLMWKARGNLGFRHFVDNAVDCSRGSMTFSTLLCFDLQGLLHQANATAATYLFQQDKF  281 (448)
Q Consensus       202 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~g~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  281 (448)
                                                          ..+                                         
T Consensus       233 ------------------------------------~~~-----------------------------------------  235 (365)
T PLN02452        233 ------------------------------------HAE-----------------------------------------  235 (365)
T ss_pred             ------------------------------------HHh-----------------------------------------
Confidence                                                000                                         


Q ss_pred             cccccCCCCCccccccchhhHHHHHHHHHhcCc-cHHHHHHHHHHHHHHHHHHhhcCCCeEEeccCC--ce-eeEEEEee
Q psy14299        282 YDVSFDTGDKSVQCGRKVDAFKLWLMWKARGNL-GFRHFVDNAVDCSRYFLSQISQRPGFRLVIPEF--QC-TNICFWFI  357 (448)
Q Consensus       282 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-G~~~~~~~~~~l~~~~~~~L~~~pg~~l~~~~~--~~-~~v~f~~~  357 (448)
                             .+....-++...+.++..+++++.++ |++.+.+++.++++++++.|++.+||-....++  ++ .+++|++.
T Consensus       236 -------~~s~~~TP~v~~i~~l~~aL~~l~~~gGl~~~~~r~~~~a~~l~~~l~~~~G~y~~~~~~~~rs~~~vsF~~~  308 (365)
T PLN02452        236 -------NDSLYNTPPCFGIYMCGLVFEDLLAQGGLKAMEKRNIRKADLLYDAIDESNGFYVCPVEKSVRSLMNVPFTLG  308 (365)
T ss_pred             -------cCCccCChhHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHHHHhCCCcccCCCChHHhCCeEEEEEcC
Confidence                   00001123355677788889988876 899999999999999999999988882210111  23 46777643


Q ss_pred             ccCCCccccchhhhhhhhhhhHHHHHHHHhCCcEEEEeeecCCcccccEEEEEecCCCCCCHHHHHHHHHHHHHHHHH
Q psy14299        358 PVSLRDKVEDETWWSTLSKVAPRIKEKLVLGGTLMIGYQPLQHRNLHNFFRLVTTCHPASSRQDMDYAIDQIELRGAE  435 (448)
Q Consensus       358 ~~~~~~~~~~~~~~~~~~~~~~~i~~~L~~~g~~~~~~~~~~g~~~~~~lRis~~~~~~~t~edid~l~~al~~~~~~  435 (448)
                      ...                ...++.+.+.++|.+.+.+-  ...   +.+|+|+.  ...+.++++.|++.+++..++
T Consensus       309 ~~~----------------~~~~f~~~~~~~g~~~~~G~--r~~---gg~R~s~y--na~~~~~v~~L~~~m~~f~~~  363 (365)
T PLN02452        309 GSE----------------LEAEFVKEAAKAGMVQLKGH--RSV---GGMRASIY--NAMPLAGVEKLVAFMKDFQAK  363 (365)
T ss_pred             Cch----------------hHHHHHHHHHHCCCcccCCc--ccc---CceEEECc--CCCCHHHHHHHHHHHHHHHHh
Confidence            211                23489999999995443321  112   33999995  477899999999999998765

>PLN00175 aminotransferase family protein; Provisional

Probab=99.71  E-value=6.2e-15  Score=151.89  Aligned_cols=152  Identities=12%  Similarity=0.023  Sum_probs=113.2

Q ss_pred             cEEEeCcHHHHHHHHHHHHHHhcCCcccccCCCCCCCeEEEecCCCchHHHHHHHHhCCCCCcEEEEecCC-CCCcCHHH
Q psy14299          4 KPFLLPGGSISNMYSICLARYRLDPDTKRKGLSHLPPLCMFTSEDSHYSMLKAAHWLGIGMDNVIRVKTNE-RGQMICSF   82 (448)
Q Consensus         4 ~g~~t~ggT~an~~al~~a~~~~~~~~~~~G~~~~~~~~Vl~~~~~H~s~~~~~~~~g~~~~~v~~v~~~~-~g~id~e~   82 (448)
                      ..++|+|+++++..++.+...              +++.|++++..|..+...++..|.   +++.++.++ ++.+|+++
T Consensus       117 ~I~vt~G~~~al~~~~~~l~~--------------~gd~Vlv~~P~y~~~~~~~~~~g~---~~~~v~~~~~~~~~~~~~  179 (413)
T PLN00175        117 EVTVTSGCTEAIAATILGLIN--------------PGDEVILFAPFYDSYEATLSMAGA---KIKTVTLRPPDFAVPEDE  179 (413)
T ss_pred             CEEEeCCHHHHHHHHHHHhCC--------------CCCEEEEeCCCchhHHHHHHHcCC---EEEEEECCcccCCCCHHH
Confidence            478899999998777665433              667889999999999999999898   788998864 57899999


Q ss_pred             HHHHHHHhhhcCCCcEEEEEeccCCccccccC---HHHHHHHHHHcCCEEEEecccccccccccchh-hhhcCCCCccEE
Q psy14299         83 LEQTIQTSLAEKKIPLFVNATAGTTVLGAFDP---LDEIATVCEKYDLWMHVDACWGGSLIFSEKYS-FVLKGINRANSV  158 (448)
Q Consensus        83 Le~~l~~~~~~~~~~~lVv~~~~~t~tG~~~~---l~~I~~ia~~~g~~l~VD~A~~~~~~~~~~~~-~~~~~~~~aD~~  158 (448)
                      |++.+.+      ++++|++++++|+||.+.+   +++|+++|++||+++++|++|....+..+... ..+.+...-.++
T Consensus       180 l~~~~~~------~~k~i~i~~p~NPtG~~~s~~~l~~l~~~a~~~~~~ii~De~Y~~l~~~~~~~s~~~~~~~~~~vi~  253 (413)
T PLN00175        180 LKAAFTS------KTRAILINTPHNPTGKMFTREELELIASLCKENDVLAFTDEVYDKLAFEGDHISMASLPGMYERTVT  253 (413)
T ss_pred             HHHhcCc------CceEEEecCCCCCCCcCCCHHHHHHHHHHHHHcCcEEEEecccCccccCCcccChhhCCCCcCcEEE
Confidence            9998854      4789999999999998864   78899999999999999999876543211100 001111122366


Q ss_pred             EECCccccCCCC-ceEEEEEe
Q psy14299        159 SWNPHKMLGAPL-QCSILLIK  178 (448)
Q Consensus       159 ~~s~hK~l~~P~-g~G~l~vr  178 (448)
                      +.|+.|.++.|. -+|+++..
T Consensus       254 i~SfSK~~~~~G~RiG~~v~~  274 (413)
T PLN00175        254 MNSLGKTFSLTGWKIGWAIAP  274 (413)
T ss_pred             EecchhhccCcchheeeeEeC
Confidence            678899987553 45666553

>PRK05942 aspartate aminotransferase; Provisional

Probab=99.71  E-value=3.5e-15  Score=152.77  Aligned_cols=152  Identities=10%  Similarity=0.072  Sum_probs=111.8

Q ss_pred             EEEeCcHHHHHHHHHHHHHHhcCCcccccCCCCCCCeEEEecCCCchHHHHHHHHhCCCCCcEEEEecCC--CCCcCHHH
Q psy14299          5 PFLLPGGSISNMYSICLARYRLDPDTKRKGLSHLPPLCMFTSEDSHYSMLKAAHWLGIGMDNVIRVKTNE--RGQMICSF   82 (448)
Q Consensus         5 g~~t~ggT~an~~al~~a~~~~~~~~~~~G~~~~~~~~Vl~~~~~H~s~~~~~~~~g~~~~~v~~v~~~~--~g~id~e~   82 (448)
                      .++|+|+++++..++.+...              +++.|+++..++..+...+...|.   +++.++.+.  ++.+|+++
T Consensus       100 i~vt~G~~~al~~~~~~~~~--------------~gd~Vlv~~P~y~~~~~~~~~~g~---~~~~v~~~~~~~~~~d~~~  162 (394)
T PRK05942        100 ALPLLGSKEGLTHLALAYVN--------------PGDVVLVPSPAYPAHFRGPLIAGA---QIYPIILKPENDWLIDLSS  162 (394)
T ss_pred             EEEccChHHHHHHHHHHhCC--------------CCCEEEEcCCCCcchHHHHHHcCC---EEEEeecCCccCCccCHHH
Confidence            66789999998777665433              677899999999998888888888   788888864  34799999


Q ss_pred             HHHHHHHhhhcCCCcEEEEEeccCCccccccC---HHHHHHHHHHcCCEEEEecccccccccccchhh--hhcCCCCccE
Q psy14299         83 LEQTIQTSLAEKKIPLFVNATAGTTVLGAFDP---LDEIATVCEKYDLWMHVDACWGGSLIFSEKYSF--VLKGINRANS  157 (448)
Q Consensus        83 Le~~l~~~~~~~~~~~lVv~~~~~t~tG~~~~---l~~I~~ia~~~g~~l~VD~A~~~~~~~~~~~~~--~~~~~~~aD~  157 (448)
                      +++.+.+      ++++|++++++|+||.+.+   +++|.++|++||+++++|++|+-..........  .+.+.....+
T Consensus       163 l~~~~~~------~~k~i~l~~P~NPtG~~~s~~~~~~i~~~a~~~~~~iI~De~y~~~~~~~~~~~~~~~~~~~~~~~i  236 (394)
T PRK05942        163 IPEEVAQ------QAKILYFNYPSNPTTATAPREFFEEIVAFARKYEIMLVHDLCYAELAFDGYQPTSLLEIPGAKDIGV  236 (394)
T ss_pred             HHHhccc------cceEEEEcCCCCCCCCcCCHHHHHHHHHHHHHcCeEEEEeccchhhccCCCCCCChhhCCCccccEE
Confidence            9998854      5789999999999999987   888999999999999999998754431110000  0111112235


Q ss_pred             EEECCccccCCC-CceEEEEEec
Q psy14299        158 VSWNPHKMLGAP-LQCSILLIKE  179 (448)
Q Consensus       158 ~~~s~hK~l~~P-~g~G~l~vr~  179 (448)
                      .+.++.|.++.| ..+|+++..+
T Consensus       237 ~~~SfSK~~~~~GlRiG~i~~~~  259 (394)
T PRK05942        237 EFHTLSKTYNMAGWRVGFVVGNR  259 (394)
T ss_pred             EEecchhccCChhhheeeeecCH
Confidence            567888987644 3478776533

>PRK08861 cystathionine gamma-synthase; Provisional

Probab=99.71  E-value=6.1e-15  Score=150.15  Aligned_cols=147  Identities=12%  Similarity=0.062  Sum_probs=110.3

Q ss_pred             cEEEeCcHHHHHHHHHHHHHHhcCCcccccCCCCCCCeEEEecCCCchHHHHHHHH-hCCCCCcEEEEecCCCCCcCHHH
Q psy14299          4 KPFLLPGGSISNMYSICLARYRLDPDTKRKGLSHLPPLCMFTSEDSHYSMLKAAHW-LGIGMDNVIRVKTNERGQMICSF   82 (448)
Q Consensus         4 ~g~~t~ggT~an~~al~~a~~~~~~~~~~~G~~~~~~~~Vl~~~~~H~s~~~~~~~-~g~~~~~v~~v~~~~~g~id~e~   82 (448)
                      .+++|+||++++..++.+...              +++.|+++...|.+....+.. ......++..++.     .|+++
T Consensus        70 ~ivvt~gg~~Ai~~~l~all~--------------~Gd~Il~~~~~y~~~~~~~~~~~~~~gi~v~~vd~-----~d~e~  130 (388)
T PRK08861         70 GAVVTNCGTSALNLWVSALLG--------------PDDLIVAPHDCYGGTYRLFNTRANKGDFKVQFVDQ-----SDAAA  130 (388)
T ss_pred             eEEEECCHHHHHHHHHHHHcC--------------CCCEEEEcCCchHHHHHHHHHHHhcCCeEEEEECC-----CCHHH
Confidence            578999999998888766543              567788888888865554422 2111114555542     48899


Q ss_pred             HHHHHHHhhhcCCCcEEEEEeccCCccccccCHHHHHHHHHHcCCEEEEecccccccccccchhhhhcCCCCccEEEECC
Q psy14299         83 LEQTIQTSLAEKKIPLFVNATAGTTVLGAFDPLDEIATVCEKYDLWMHVDACWGGSLIFSEKYSFVLKGINRANSVSWNP  162 (448)
Q Consensus        83 Le~~l~~~~~~~~~~~lVv~~~~~t~tG~~~~l~~I~~ia~~~g~~l~VD~A~~~~~~~~~~~~~~~~~~~~aD~~~~s~  162 (448)
                      +++++.+      ++++|++++++|++|.+.|+++|.++|+++|++++||.+|+.+....+.      .. ++|+++.|+
T Consensus       131 l~~~i~~------~tklV~lesP~NPtG~v~dl~~I~~la~~~gi~vIvDea~~~~~~~~pl------~~-GaDivv~S~  197 (388)
T PRK08861        131 LDAALAK------KPKLILLETPSNPLVRVVDIAELCQKAKAVGALVAVDNTFLTPVLQKPL------EL-GADFVIHST  197 (388)
T ss_pred             HHHhcCc------CCeEEEEECCCCCCCcccCHHHHHHHHHHcCCEEEEECCccccccCCCc------cc-CCCEEEeec
Confidence            9988854      5889999999999999999999999999999999999999876543221      11 589999999


Q ss_pred             ccccCCCCc--eEEEEEeccch
Q psy14299        163 HKMLGAPLQ--CSILLIKEKGL  182 (448)
Q Consensus       163 hK~l~~P~g--~G~l~vr~~~~  182 (448)
                      |||+++|.+  .|++..+++++
T Consensus       198 tK~l~G~~d~~gG~i~~~~~~~  219 (388)
T PRK08861        198 TKYINGHSDVIGGVLITKTKEH  219 (388)
T ss_pred             ceeccCCCcceeEEEEecHHHH
Confidence            999999976  45555555443

>PRK01688 histidinol-phosphate aminotransferase; Provisional

Probab=99.71  E-value=1.3e-15  Score=153.61  Aligned_cols=150  Identities=11%  Similarity=0.010  Sum_probs=106.9

Q ss_pred             cEEEeCcHHHHHHHHHHHHHHhcCCcccccCCCCCCCeEEEecCCCchHHHHHHHHhCCCCCcEEEEecCCCCCcCHHHH
Q psy14299          4 KPFLLPGGSISNMYSICLARYRLDPDTKRKGLSHLPPLCMFTSEDSHYSMLKAAHWLGIGMDNVIRVKTNERGQMICSFL   83 (448)
Q Consensus         4 ~g~~t~ggT~an~~al~~a~~~~~~~~~~~G~~~~~~~~Vl~~~~~H~s~~~~~~~~g~~~~~v~~v~~~~~g~id~e~L   83 (448)
                      ..++|+|+++++.+++.+...+             .++.|+++..+|..+...++..|.   +++.+|.++++.+|++++
T Consensus        76 ~I~~~~Gs~e~i~~~~~~~~~~-------------g~~~vli~~P~y~~y~~~~~~~G~---~~~~v~~~~~~~~d~~~l  139 (351)
T PRK01688         76 QVLVSRGADEGIELLIRAFCEP-------------GKDAILYCPPTYGMYSVSAETIGV---EIRTVPTLDNWQLDLPAI  139 (351)
T ss_pred             HEEEcCCHHHHHHHHHHHhcCC-------------CCCEEEEcCCCHHHHHHHHHHcCC---EEEEeecCCCCCCCHHHH
Confidence            3678999999987777665431             236788888999999999999998   788999988889999999


Q ss_pred             HHHHHHhhhcCCCcEEEEEeccCCccccccCHHHHHHHHHHc--CCEEEEecccccccccccchhhhhcCCCCccEEEEC
Q psy14299         84 EQTIQTSLAEKKIPLFVNATAGTTVLGAFDPLDEIATVCEKY--DLWMHVDACWGGSLIFSEKYSFVLKGINRANSVSWN  161 (448)
Q Consensus        84 e~~l~~~~~~~~~~~lVv~~~~~t~tG~~~~l~~I~~ia~~~--g~~l~VD~A~~~~~~~~~~~~~~~~~~~~aD~~~~s  161 (448)
                      ++++.       ++++|++++++|+||.+.+.+++.++++..  +.++++|+||.-.... ......+.... -=++.-|
T Consensus       140 ~~~~~-------~~~lv~l~nPnNPTG~~~~~~~l~~l~~~~~~~~~vivDEay~~f~~~-~s~~~~~~~~~-n~iv~rS  210 (351)
T PRK01688        140 ADNLD-------GVKVVYVCSPNNPTGNLINPQDLRTLLELTRGKAIVVADEAYIEFCPQ-ASLAGWLAEYP-HLVILRT  210 (351)
T ss_pred             HHhcc-------CCcEEEEeCCCCCCCCCCCHHHHHHHHHhCCCCcEEEEECchhhcCCC-CChHHHHhhCC-CEEEEec
Confidence            98772       378999999999999999887777776532  6899999998644311 11111111111 1155668


Q ss_pred             CccccCCC-CceEEEEEe
Q psy14299        162 PHKMLGAP-LQCSILLIK  178 (448)
Q Consensus       162 ~hK~l~~P-~g~G~l~vr  178 (448)
                      ++|+++.| .-+|+++..
T Consensus       211 fSK~~glaGlRiGy~i~~  228 (351)
T PRK01688        211 LSKAFALAGLRCGFTLAN  228 (351)
T ss_pred             chHhhcCHHHHHhHHhCC
Confidence            88987633 224666653

>PRK02731 histidinol-phosphate aminotransferase; Validated

Probab=99.71  E-value=6.9e-15  Score=149.00  Aligned_cols=276  Identities=12%  Similarity=0.041  Sum_probs=175.7

Q ss_pred             cEEEeCcHHHHHHHHHHHHHHhcCCcccccCCCCCCCeEEEecCCCchHHHHHHHHhCCCCCcEEEEecCCCCCcCHHHH
Q psy14299          4 KPFLLPGGSISNMYSICLARYRLDPDTKRKGLSHLPPLCMFTSEDSHYSMLKAAHWLGIGMDNVIRVKTNERGQMICSFL   83 (448)
Q Consensus         4 ~g~~t~ggT~an~~al~~a~~~~~~~~~~~G~~~~~~~~Vl~~~~~H~s~~~~~~~~g~~~~~v~~v~~~~~g~id~e~L   83 (448)
                      ..++|+|+++++...+.+..+              +++.|+++...|..+...+...|.   +++.+|. .++.+|++++
T Consensus        86 ~i~~t~G~~~~l~~~~~~l~~--------------~gd~vl~~~p~y~~~~~~~~~~g~---~~~~~~~-~~~~~~~~~l  147 (367)
T PRK02731         86 RIILGNGSDEILELLARAYLG--------------PGDEVIYSEHGFAVYPIAAQAVGA---KPVEVPA-KDYGHDLDAM  147 (367)
T ss_pred             HEEEcCCHHHHHHHHHHHhcC--------------CCCEEEEecCCHHHHHHHHHHcCC---eEEEecc-cCCCCCHHHH
Confidence            367888888876555544332              566788888888777777788888   7888887 4678899999


Q ss_pred             HHHHHHhhhcCCCcEEEEEeccCCccccccCHHHHHHHHHHc--CCEEEEecccccccccccchh-hhhcCCCCccEEEE
Q psy14299         84 EQTIQTSLAEKKIPLFVNATAGTTVLGAFDPLDEIATVCEKY--DLWMHVDACWGGSLIFSEKYS-FVLKGINRANSVSW  160 (448)
Q Consensus        84 e~~l~~~~~~~~~~~lVv~~~~~t~tG~~~~l~~I~~ia~~~--g~~l~VD~A~~~~~~~~~~~~-~~~~~~~~aD~~~~  160 (448)
                      ++.+++      ++++|++++++|+||.+.|.++|.++++.+  |+++++|++|.......+... ........-.+++.
T Consensus       148 ~~~~~~------~~~~v~l~~p~nptG~~~~~~~l~~l~~~~~~~~~li~De~y~~~~~~~~~~~~~~~~~~~~~~i~~~  221 (367)
T PRK02731        148 LAAVTP------RTRLVFIANPNNPTGTYLPAEEVERFLAGVPPDVLVVLDEAYAEYVRRKDYEDGLELVAKFPNVVVTR  221 (367)
T ss_pred             HHHhCC------CCcEEEEeCCCCCCCcCCCHHHHHHHHHhCCCCcEEEEECcHHHhccCcCcccHHHHHhhcCCEEEEe
Confidence            998853      478999999999999999999999999875  899999999875443111000 00000111125556


Q ss_pred             CCccccCCC-CceEEEEEeccchhhhhccCCcccccccCcccccccCCCCCcccCCCCchhHHHHHHHHHhChHHHHHHH
Q psy14299        161 NPHKMLGAP-LQCSILLIKEKGLLHQANATAATYLFQQDKFYDVSFDTGDKSVQCGRKVDAFKLWLMWKARGNLGFRHFV  239 (448)
Q Consensus       161 s~hK~l~~P-~g~G~l~vr~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~g~~~~i  239 (448)
                      +..|.++.| ..+|+++.++ ++..........+                 .  .    ..+..+++...+         
T Consensus       222 S~SK~~g~~G~RiG~l~~~~-~~~~~l~~~~~~~-----------------~--~----~~~~~~~a~~~l---------  268 (367)
T PRK02731        222 TFSKAYGLAGLRVGYGIAPP-EIIDALNRVRQPF-----------------N--V----NSLALAAAVAAL---------  268 (367)
T ss_pred             eehHhhcCcccceeeeeCCH-HHHHHHHHccCCC-----------------C--C----CHHHHHHHHHHh---------
Confidence            888987644 3568887754 3333322111000                 0  0    001111111111         


Q ss_pred             HHhhhhccCCCccchhhhhhhhhhhhhhhhhhhhhhhccccccccccCCCCCccccccchhhHHHHHHHHHhcCccHHHH
Q psy14299        240 DNAVDCSRGSMTFSTLLCFDLQGLLHQANATAATYLFQQDKFYDVSFDTGDKSVQCGRKVDAFKLWLMWKARGNLGFRHF  319 (448)
Q Consensus       240 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~  319 (448)
                                                                                           +  ....++++
T Consensus       269 ---------------------------------------------------------------------~--~~~~~~~~  277 (367)
T PRK02731        269 ---------------------------------------------------------------------D--DDAFVEKS  277 (367)
T ss_pred             ---------------------------------------------------------------------C--CHHHHHHH
Confidence                                                                                 0  01224556


Q ss_pred             HHHHHHHHHHHHHHhhcCCCeEEeccCCceeeEEEEeeccCCCccccchhhhhhhhhhhHHHHHHHHhCCcEEEEeeecC
Q psy14299        320 VDNAVDCSRYFLSQISQRPGFRLVIPEFQCTNICFWFIPVSLRDKVEDETWWSTLSKVAPRIKEKLVLGGTLMIGYQPLQ  399 (448)
Q Consensus       320 ~~~~~~l~~~~~~~L~~~pg~~l~~~~~~~~~v~f~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~L~~~g~~~~~~~~~~  399 (448)
                      .++..++.+++.+.|+++ |+.+.  ++..+.+.+.+ +...+               ..++.+.|.++| +.+.+....
T Consensus       278 ~~~~~~~~~~l~~~L~~~-g~~~~--~~~g~~~~i~~-~~~~~---------------~~~~~~~L~~~g-I~v~~~~~~  337 (367)
T PRK02731        278 RALNAEGMAWLTEFLAEL-GLEYI--PSVGNFILVDF-DDGKD---------------AAEAYQALLKRG-VIVRPVAGY  337 (367)
T ss_pred             HHHHHHHHHHHHHHHHHC-CCccC--CCCceEEEEEC-CCCCC---------------HHHHHHHHHHCC-EEEEeCCCC
Confidence            667777888899999988 88764  34455555543 22111               237888999988 555544333


Q ss_pred             CcccccEEEEEecCCCCCCHHHHHHHHHHHHHHHH
Q psy14299        400 HRNLHNFFRLVTTCHPASSRQDMDYAIDQIELRGA  434 (448)
Q Consensus       400 g~~~~~~lRis~~~~~~~t~edid~l~~al~~~~~  434 (448)
                      +.  ++++|+++  +   +.+|+++++++|+++.+
T Consensus       338 ~~--~~~iRis~--~---~~~e~~~l~~aL~~~~~  365 (367)
T PRK02731        338 GL--PNALRITI--G---TEEENRRFLAALKEFLA  365 (367)
T ss_pred             CC--CCeEEEec--C---CHHHHHHHHHHHHHHHh
Confidence            31  37899999  3   68999999999998754

>TIGR01329 cysta_beta_ly_E cystathionine beta-lyase, eukaryotic

Probab=99.70  E-value=2.7e-15  Score=152.74  Aligned_cols=143  Identities=14%  Similarity=0.113  Sum_probs=110.9

Q ss_pred             cEEEeCcHHHHHHHHHHHHHHhcCCcccccCCCCCCCeEEEecCCCchHHHHHH----HHhCCCCCcEEEEecCCCCCcC
Q psy14299          4 KPFLLPGGSISNMYSICLARYRLDPDTKRKGLSHLPPLCMFTSEDSHYSMLKAA----HWLGIGMDNVIRVKTNERGQMI   79 (448)
Q Consensus         4 ~g~~t~ggT~an~~al~~a~~~~~~~~~~~G~~~~~~~~Vl~~~~~H~s~~~~~----~~~g~~~~~v~~v~~~~~g~id   79 (448)
                      ..+++++|+.++..++. ...              +++.|+++...|.+....+    ...|+   +++.++.+     |
T Consensus        64 ~~l~~~sG~~al~~~l~-ll~--------------~Gd~Vl~~~~~y~~~~~~~~~~~~~~G~---~v~~vd~~-----d  120 (378)
T TIGR01329        64 RAFAFSSGMAALDVITR-LLN--------------NGDEIIAGDDLYGGTDRLLTQVVPRSGV---VVVHVDTT-----D  120 (378)
T ss_pred             cEEEECCHHHHHHHHHH-HhC--------------CCCEEEEcCCCchHHHHHHHHHHHHcCc---EEEEeCCC-----C
Confidence            35778888877654443 222              6678888988888776543    44566   67777764     8


Q ss_pred             HHHHHHHHHHhhhcCCCcEEEEEeccCCccccccCHHHHHHHHHHcCCEEEEecccccccccccchhhhhcCCCCccEEE
Q psy14299         80 CSFLEQTIQTSLAEKKIPLFVNATAGTTVLGAFDPLDEIATVCEKYDLWMHVDACWGGSLIFSEKYSFVLKGINRANSVS  159 (448)
Q Consensus        80 ~e~Le~~l~~~~~~~~~~~lVv~~~~~t~tG~~~~l~~I~~ia~~~g~~l~VD~A~~~~~~~~~~~~~~~~~~~~aD~~~  159 (448)
                      ++++++++++      ++++|++++++|++|.+.|+++|+++||+||++++||++++.+....+.      .. ++|+++
T Consensus       121 ~~~le~~i~~------~tklv~le~psnptg~v~dl~~I~~la~~~g~~vivD~a~~~~~~~~~l------~~-g~Di~v  187 (378)
T TIGR01329       121 LDKVKAALGP------KTKLVLLESPTNPLQKIVDIRKISEMAHAQNALVVVDNTMMSPLLCNPL------EL-GADIVY  187 (378)
T ss_pred             HHHHHHhcCc------CceEEEEECCCCCCCeeecHHHHHHHHHHcCCEEEEECCCcccccCChh------hc-CCcEEE
Confidence            9999998854      5889999999999999999999999999999999999998766442111      11 479999


Q ss_pred             ECCccccCCCCc--eEEEEEeccch
Q psy14299        160 WNPHKMLGAPLQ--CSILLIKEKGL  182 (448)
Q Consensus       160 ~s~hK~l~~P~g--~G~l~vr~~~~  182 (448)
                      .|+||++++|.+  .|+++++++.+
T Consensus       188 ~S~tK~l~G~~~~~~G~v~~~~~~~  212 (378)
T TIGR01329       188 HSATKFLAGHSDVMAGVLAVKGEEI  212 (378)
T ss_pred             EecceeccCCccceeEEEEeCcHHH
Confidence            999999999987  88888876543

This model represents cystathionine beta-lyase (alternate name: beta-cystathionase), one of several pyridoxal-dependent enzymes of cysteine, methionine, and homocysteine metabolism. This enzyme is involved in the biosynthesis of Met from Cys.

>PLN02376 1-aminocyclopropane-1-carboxylate synthase

Probab=99.70  E-value=1.4e-14  Score=152.34  Aligned_cols=161  Identities=11%  Similarity=0.176  Sum_probs=117.6

Q ss_pred             cEEEeCcHHHHHHHHHHHHHHhcCCcccccCCCCCCCeEEEecCCCchHHHHHHH-HhCCCCCcEEEEecC--CCCCcCH
Q psy14299          4 KPFLLPGGSISNMYSICLARYRLDPDTKRKGLSHLPPLCMFTSEDSHYSMLKAAH-WLGIGMDNVIRVKTN--ERGQMIC   80 (448)
Q Consensus         4 ~g~~t~ggT~an~~al~~a~~~~~~~~~~~G~~~~~~~~Vl~~~~~H~s~~~~~~-~~g~~~~~v~~v~~~--~~g~id~   80 (448)
                      ..++|+|+++++.+.+.+...              |++.|+++...+..+...++ ..|+   +++.+|.+  +++.+|+
T Consensus       121 ~Ivit~Ga~~al~~l~~~l~~--------------pGD~Vlv~~P~Y~~~~~~~~~~~G~---~vv~v~~~~~~~~~~~~  183 (496)
T PLN02376        121 RVVMSGGATGANETIMFCLAD--------------PGDVFLIPSPYYAAFDRDLRWRTGV---EIIPVPCSSSDNFKLTV  183 (496)
T ss_pred             hEEEccchHHHHHHHHHHhCC--------------CCCEEEECCCCccchHHHHHhhCCC---EEEEEeCCCCccCcCCH
Confidence            467899999998877776544              67789999999999888777 4788   78899985  3568999


Q ss_pred             HHHHHHHHHhhhcCCCcEEEEEeccCCccccccC---HHHHHHHHHHcCCEEEEecccccccccccchhh---hhcCCC-
Q psy14299         81 SFLEQTIQTSLAEKKIPLFVNATAGTTVLGAFDP---LDEIATVCEKYDLWMHVDACWGGSLIFSEKYSF---VLKGIN-  153 (448)
Q Consensus        81 e~Le~~l~~~~~~~~~~~lVv~~~~~t~tG~~~~---l~~I~~ia~~~g~~l~VD~A~~~~~~~~~~~~~---~~~~~~-  153 (448)
                      +++++++++..+.+.++++|+++.++|+||.+.+   +++|.++|++||+++++|.+|+...+..+....   ...... 
T Consensus       184 ~~le~a~~~a~~~~~~~k~l~l~nP~NPTG~~~s~e~l~~L~~~a~~~~i~lI~DEiY~~~~f~~~~~~si~~l~~~~~~  263 (496)
T PLN02376        184 DAADWAYKKAQESNKKVKGLILTNPSNPLGTMLDKDTLTNLVRFVTRKNIHLVVDEIYAATVFAGGDFVSVAEVVNDVDI  263 (496)
T ss_pred             HHHHHHHHHHHhcCCCeeEEEEcCCCCCCCccCCHHHHHHHHHHHHHcCCEEEEEcCccccccCCCCcccHHHhhccccc
Confidence            9999887654444457899999999999998877   666888999999999999999875432111111   111000 


Q ss_pred             ---Ccc--EEEECCccccCCC-CceEEEEEeccc
Q psy14299        154 ---RAN--SVSWNPHKMLGAP-LQCSILLIKEKG  181 (448)
Q Consensus       154 ---~aD--~~~~s~hK~l~~P-~g~G~l~vr~~~  181 (448)
                         ..|  .++.++.|.++.| .-+|+++..++.
T Consensus       264 ~~~~~~~v~vv~S~SK~~glpGlRvG~li~~~~~  297 (496)
T PLN02376        264 SEVNVDLIHIVYSLSKDMGLPGFRVGIVYSFNDS  297 (496)
T ss_pred             cccCCCeEEEEEeccccCCCCcceEEEEEECCHH
Confidence               012  2357999999766 567887775443

>PLN02187 rooty/superroot1

Probab=99.70  E-value=9.6e-15  Score=152.44  Aligned_cols=152  Identities=10%  Similarity=0.060  Sum_probs=112.0

Q ss_pred             cEEEeCcHHHHHHHHHHHHHHhcCCcccccCCCCCCCeEEEecCCCchHHHHHHHHhCCCCCcEEEEecC--CCCCcCHH
Q psy14299          4 KPFLLPGGSISNMYSICLARYRLDPDTKRKGLSHLPPLCMFTSEDSHYSMLKAAHWLGIGMDNVIRVKTN--ERGQMICS   81 (448)
Q Consensus         4 ~g~~t~ggT~an~~al~~a~~~~~~~~~~~G~~~~~~~~Vl~~~~~H~s~~~~~~~~g~~~~~v~~v~~~--~~g~id~e   81 (448)
                      ..++|+|+++++.+++.+..+              +++.|+++...+..+...++..|.   +++.++..  .++.+|++
T Consensus       133 ~I~it~G~~~al~~~~~~l~~--------------pGd~Vlv~~P~y~~y~~~~~~~g~---~~~~~~l~~~~~~~~d~~  195 (462)
T PLN02187        133 DIFLTAGCNQGIEIVFESLAR--------------PNANILLPRPGFPHYDARAAYSGL---EVRKFDLLPEKEWEIDLE  195 (462)
T ss_pred             cEEEeCCHHHHHHHHHHHhcC--------------CCCEEEEeCCCCccHHHHHHHcCC---EEEEEeCccccCCccCHH
Confidence            478999999998888776543              677889999999988888888888   78888764  46789999


Q ss_pred             HHHHHHHHhhhcCCCcEEEEEeccCCccccccC---HHHHHHHHHHcCCEEEEecccccccccccchhhhhcCCC-Ccc-
Q psy14299         82 FLEQTIQTSLAEKKIPLFVNATAGTTVLGAFDP---LDEIATVCEKYDLWMHVDACWGGSLIFSEKYSFVLKGIN-RAN-  156 (448)
Q Consensus        82 ~Le~~l~~~~~~~~~~~lVv~~~~~t~tG~~~~---l~~I~~ia~~~g~~l~VD~A~~~~~~~~~~~~~~~~~~~-~aD-  156 (448)
                      +|++++++      +++++++++++|+||.+.+   +++|+++|++||+++++|++|.-..+....... +..+. ... 
T Consensus       196 ~l~~~~~~------~~~~v~i~nP~NPTG~v~s~e~l~~i~~~a~~~~i~iI~DE~Y~~l~f~~~~~~s-~~~~~~~~~v  268 (462)
T PLN02187        196 GIEAIADE------NTVAMVVINPNNPCGNVYSHDHLKKVAETARKLGIMVISDEVYDRTIFGDNPFVS-MGKFASIVPV  268 (462)
T ss_pred             HHHHhcCC------CcEEEEEeCCCCCCCCccCHHHHHHHHHHHHHCCCEEEEeccccccccCCCCcee-HHHhccCCcE
Confidence            99988754      4789999999999999876   888999999999999999998864431111000 11110 111 


Q ss_pred             EEEECCccccCCC-CceEEEEEec
Q psy14299        157 SVSWNPHKMLGAP-LQCSILLIKE  179 (448)
Q Consensus       157 ~~~~s~hK~l~~P-~g~G~l~vr~  179 (448)
                      +++.|+.|.++.| .-+|+++..+
T Consensus       269 i~l~SfSK~f~~pGlRiG~~v~~~  292 (462)
T PLN02187        269 LTLAGISKGWVVPGWKIGWIALND  292 (462)
T ss_pred             EEEecchhhcCCccceeEEEEecC
Confidence            4456889986666 3467666533

>TIGR01265 tyr_nico_aTase tyrosine/nicotianamine aminotransferases

Probab=99.70  E-value=1.1e-14  Score=149.54  Aligned_cols=152  Identities=14%  Similarity=0.067  Sum_probs=112.5

Q ss_pred             cEEEeCcHHHHHHHHHHHHHHhcCCcccccCCCCCCCeEEEecCCCchHHHHHHHHhCCCCCcEEEEecCC--CCCcCHH
Q psy14299          4 KPFLLPGGSISNMYSICLARYRLDPDTKRKGLSHLPPLCMFTSEDSHYSMLKAAHWLGIGMDNVIRVKTNE--RGQMICS   81 (448)
Q Consensus         4 ~g~~t~ggT~an~~al~~a~~~~~~~~~~~G~~~~~~~~Vl~~~~~H~s~~~~~~~~g~~~~~v~~v~~~~--~g~id~e   81 (448)
                      ..++|+|+|+++.+++.+...              +++.|+++..++..+...+...|.   ++..++.++  ++.+|++
T Consensus        98 ~ii~t~G~t~al~~~~~~l~~--------------~gd~Vlv~~p~y~~~~~~~~~~g~---~~~~~~~~~~~~~~~d~~  160 (403)
T TIGR01265        98 DVVLTSGCSQAIEICIEALAN--------------PGANILVPRPGFPLYDTRAAFSGL---EVRLYDLLPEKDWEIDLD  160 (403)
T ss_pred             HEEEecChHHHHHHHHHHhCC--------------CCCEEEEeCCCchhHHHHHHHcCC---EEEEecCCcccCCccCHH
Confidence            478999999998888876543              566788898999888888888888   677777643  5689999


Q ss_pred             HHHHHHHHhhhcCCCcEEEEEeccCCccccccC---HHHHHHHHHHcCCEEEEecccccccccccchhhhhcCCC-Ccc-
Q psy14299         82 FLEQTIQTSLAEKKIPLFVNATAGTTVLGAFDP---LDEIATVCEKYDLWMHVDACWGGSLIFSEKYSFVLKGIN-RAN-  156 (448)
Q Consensus        82 ~Le~~l~~~~~~~~~~~lVv~~~~~t~tG~~~~---l~~I~~ia~~~g~~l~VD~A~~~~~~~~~~~~~~~~~~~-~aD-  156 (448)
                      ++++++.+      +++++++++++|++|.+.+   +++|.++|+++|+++++|++|+......+.... +..+. ... 
T Consensus       161 ~l~~~~~~------~~~~v~i~~p~NPtG~~~~~~~~~~i~~~a~~~~~~ii~De~y~~~~~~~~~~~~-~~~~~~~~~v  233 (403)
T TIGR01265       161 GLEALADE------KTVAIVVINPSNPCGSVFSRDHLQKIAEVARKLGIPIIADEIYGHMVFGDAPFIP-MASFASIVPV  233 (403)
T ss_pred             HHHHHhCc------CccEEEEecCCCCCCCCCCHHHHHHHHHHHHHCCCEEEEEccccccccCCCCccc-hhhhccCCcE
Confidence            99998754      4778999999999998865   899999999999999999998855432111111 11111 112 


Q ss_pred             EEEECCccccCCC-CceEEEEEec
Q psy14299        157 SVSWNPHKMLGAP-LQCSILLIKE  179 (448)
Q Consensus       157 ~~~~s~hK~l~~P-~g~G~l~vr~  179 (448)
                      +++.|+.|.++.| .-+|++++.+
T Consensus       234 i~~~S~SK~~~~pGlRiG~~v~~~  257 (403)
T TIGR01265       234 LSLGGISKRWVVPGWRLGWIIIHD  257 (403)
T ss_pred             EEEeecccccCCCcceEEEEEEeC
Confidence            4556889987666 4477776643

This subfamily of pyridoxal phosphate-dependent enzymes includes known examples of both tyrosine aminotransferase from animals and nicotianamine aminotransferase from barley.

>PRK13355 bifunctional HTH-domain containing protein/aminotransferase; Provisional

Probab=99.70  E-value=1.1e-14  Score=154.36  Aligned_cols=151  Identities=10%  Similarity=-0.007  Sum_probs=110.9

Q ss_pred             cEEEeCcHHHHHHHHHHHHHHhcCCcccccCCCCCCCeEEEecCCCchHHHHHHHHhCCCCCcEEEEecCC--CCCcCHH
Q psy14299          4 KPFLLPGGSISNMYSICLARYRLDPDTKRKGLSHLPPLCMFTSEDSHYSMLKAAHWLGIGMDNVIRVKTNE--RGQMICS   81 (448)
Q Consensus         4 ~g~~t~ggT~an~~al~~a~~~~~~~~~~~G~~~~~~~~Vl~~~~~H~s~~~~~~~~g~~~~~v~~v~~~~--~g~id~e   81 (448)
                      ..++|+|+++++.+++.+..+              +++.|+++...+..+...+++.|.   +++.++.++  ++.+|++
T Consensus       210 ~I~it~G~~eal~~~~~~l~~--------------~Gd~Vli~~P~y~~y~~~~~~~g~---~~v~~~~~~~~~~~~d~~  272 (517)
T PRK13355        210 DIYTGNGVSELINLSMSALLD--------------DGDEVLIPSPDYPLWTACVNLAGG---TAVHYRCDEQSEWYPDID  272 (517)
T ss_pred             HEEEeCcHHHHHHHHHHHhCC--------------CCCEEEEcCCCCcCHHHHHHHCCC---EEEEeecCcccCCCCCHH
Confidence            478899999998888766543              677899999999999999999988   788888764  4689999


Q ss_pred             HHHHHHHHhhhcCCCcEEEEEeccCCccccccC---HHHHHHHHHHcCCEEEEecccccccccccchhhhhcCCCCccEE
Q psy14299         82 FLEQTIQTSLAEKKIPLFVNATAGTTVLGAFDP---LDEIATVCEKYDLWMHVDACWGGSLIFSEKYSFVLKGINRANSV  158 (448)
Q Consensus        82 ~Le~~l~~~~~~~~~~~lVv~~~~~t~tG~~~~---l~~I~~ia~~~g~~l~VD~A~~~~~~~~~~~~~~~~~~~~aD~~  158 (448)
                      ++++++.+      ++++|++++++|+||.+.+   +++|.++|++||+++++|++|.-..+..........-....-++
T Consensus       273 ~l~~~~~~------~~k~i~i~nP~NPTG~v~~~~~l~~i~~~a~~~~~~ii~DE~Y~~~~~~~~~~~s~~~~~~~~~vi  346 (517)
T PRK13355        273 DIRSKITS------RTKAIVIINPNNPTGALYPREVLQQIVDIAREHQLIIFSDEIYDRLVMDGLEHTSIASLAPDLFCV  346 (517)
T ss_pred             HHHHhcCc------CceEEEEECCCCCCCcCcCHHHHHHHHHHHHHcCcEEEEehhhhhhcCCCCCcccHHHhCCCCeEE
Confidence            99998854      5789999999999999888   88899999999999999999874332110101100100111133


Q ss_pred             E-ECCccccCCC-CceEEEEE
Q psy14299        159 S-WNPHKMLGAP-LQCSILLI  177 (448)
Q Consensus       159 ~-~s~hK~l~~P-~g~G~l~v  177 (448)
                      + .++.|.++.| .-+|++++
T Consensus       347 ~~~S~SK~~~~~G~RiG~~i~  367 (517)
T PRK13355        347 TFSGLSKSHMIAGYRIGWMIL  367 (517)
T ss_pred             EEecchhhccCcccceEEEEe
Confidence            3 5778987654 23677765

>PRK08056 threonine-phosphate decarboxylase; Provisional

Probab=99.70  E-value=9.5e-15  Score=147.58  Aligned_cols=151  Identities=14%  Similarity=0.080  Sum_probs=102.4

Q ss_pred             cEEEeCcHHHHHHHHHHHHHHhcCCcccccCCCCCCCeEEEecCCCchHHHHHHHHhCCCCCcEEEEecCCC--CCcCHH
Q psy14299          4 KPFLLPGGSISNMYSICLARYRLDPDTKRKGLSHLPPLCMFTSEDSHYSMLKAAHWLGIGMDNVIRVKTNER--GQMICS   81 (448)
Q Consensus         4 ~g~~t~ggT~an~~al~~a~~~~~~~~~~~G~~~~~~~~Vl~~~~~H~s~~~~~~~~g~~~~~v~~v~~~~~--g~id~e   81 (448)
                      ..++|+|+++++..++.+. .              ++++++ ....+..+...++..|.   +++.+|.+++  ..+| +
T Consensus        74 ~i~it~Ga~~~l~~~~~~l-~--------------~g~viv-~~P~y~~~~~~~~~~g~---~~~~v~~~~~~~~~~~-~  133 (356)
T PRK08056         74 WILAGNGETESIFAVVSGL-K--------------PRRAMI-VTPGFAEYRRALQQVGC---EIRRYSLREADGWQLT-D  133 (356)
T ss_pred             hEEECCCHHHHHHHHHHHh-C--------------CCCEEE-eCCCcHHHHHHHHHcCC---eEEEEecccccCCCcc-H
Confidence            4678999999877666543 2              334444 44566677788888888   7889988643  3444 3


Q ss_pred             HHHHHHHHhhhcCCCcEEEEEeccCCccccccC---HHHHHHHHHHcCCEEEEecccccccccccchhhhhcCCCCccEE
Q psy14299         82 FLEQTIQTSLAEKKIPLFVNATAGTTVLGAFDP---LDEIATVCEKYDLWMHVDACWGGSLIFSEKYSFVLKGINRANSV  158 (448)
Q Consensus        82 ~Le~~l~~~~~~~~~~~lVv~~~~~t~tG~~~~---l~~I~~ia~~~g~~l~VD~A~~~~~~~~~~~~~~~~~~~~aD~~  158 (448)
                      ++++.+.      .++++|++++++|+||...+   +++|+++|++||+++++|++|.............+... ...++
T Consensus       134 ~~~~~~~------~~~k~v~l~~p~NPTG~~~~~~~~~~i~~~a~~~~~~ii~De~y~~~~~~~~~~~~~~~~~-~~~i~  206 (356)
T PRK08056        134 AILEALT------PDLDCLFLCTPNNPTGLLPERQLLQAIAERCKSLNIALILDEAFIDFIPDETGFIPQLADN-PHLWV  206 (356)
T ss_pred             HHHHhcc------CCCCEEEEeCCcCCCCCCCCHHHHHHHHHHHHhcCCEEEEecchhccCCcchHHHHHhccC-CCEEE
Confidence            4444443      25789999999999999988   88899999999999999999864432110000111221 24578


Q ss_pred             EECCccccCCC-CceEEEEEeccc
Q psy14299        159 SWNPHKMLGAP-LQCSILLIKEKG  181 (448)
Q Consensus       159 ~~s~hK~l~~P-~g~G~l~vr~~~  181 (448)
                      +.|++|+++.| .-+|+++..++.
T Consensus       207 ~~S~SK~~~~~G~RiG~~v~~~~~  230 (356)
T PRK08056        207 LRSLTKFYAIPGLRLGYLVNSDDA  230 (356)
T ss_pred             EEechhhccCcchhheeeecCCHH
Confidence            89999999855 557777654433

>PRK05387 histidinol-phosphate aminotransferase; Provisional

Probab=99.70  E-value=6.2e-15  Score=148.48  Aligned_cols=149  Identities=11%  Similarity=-0.061  Sum_probs=111.0

Q ss_pred             cEEEeCcHHHHHHHHHHHHHHhcCCcccccCCCCCCCeEEEecCCCchHHHHHHHHhCCCCCcEEEEecCCCCCcCHHHH
Q psy14299          4 KPFLLPGGSISNMYSICLARYRLDPDTKRKGLSHLPPLCMFTSEDSHYSMLKAAHWLGIGMDNVIRVKTNERGQMICSFL   83 (448)
Q Consensus         4 ~g~~t~ggT~an~~al~~a~~~~~~~~~~~G~~~~~~~~Vl~~~~~H~s~~~~~~~~g~~~~~v~~v~~~~~g~id~e~L   83 (448)
                      ..++|+|+++++.+++.+..+              +++.|+++...|..+...++..|+   +++.+|.++++.+|++++
T Consensus        79 ~I~it~G~~~al~~~~~~l~~--------------~gd~vlv~~P~y~~~~~~~~~~g~---~~~~v~~~~~~~~d~~~l  141 (353)
T PRK05387         79 QVFVGNGSDEVLAHAFLAFFN--------------HDRPLLFPDITYSFYPVYAGLYGI---PYEEIPLDDDFSIDVEDY  141 (353)
T ss_pred             HEEEcCCHHHHHHHHHHHhcC--------------CCCEEEEeCCCHHHHHHHHHHcCC---EEEEeecCCCCCCCHHHH
Confidence            478999999998888776654              567788898888778887888888   788999988889999988


Q ss_pred             HHHHHHhhhcCCCcEEEEEeccCCccccccCHHHHHHHHHHc-CCEEEEecccccccccccchhhhhcCCCCccEEEECC
Q psy14299         84 EQTIQTSLAEKKIPLFVNATAGTTVLGAFDPLDEIATVCEKY-DLWMHVDACWGGSLIFSEKYSFVLKGINRANSVSWNP  162 (448)
Q Consensus        84 e~~l~~~~~~~~~~~lVv~~~~~t~tG~~~~l~~I~~ia~~~-g~~l~VD~A~~~~~~~~~~~~~~~~~~~~aD~~~~s~  162 (448)
                      ++          ..++|++++++|+||.+.|.+++.++++.+ ++++++|.+|.....  .......... .-.+++.|+
T Consensus       142 ~~----------~~~~v~~~~P~NPtG~~~~~~~~~~l~~~~~~~~livDe~y~~~~~--~~~~~~~~~~-~~~i~~~S~  208 (353)
T PRK05387        142 LR----------PNGGIIFPNPNAPTGIALPLAEIERILAANPDSVVVIDEAYVDFGG--ESAIPLIDRY-PNLLVVQTF  208 (353)
T ss_pred             Hh----------cCCEEEEeCCCCCCCCCCCHHHHHHHHHhCCCcEEEEeCcccccCC--cchHHHHhhC-CCEEEEEeh
Confidence            63          135789999999999999999999999886 999999999853211  1111111111 235788899


Q ss_pred             ccccCCC-CceEEEEEeccchh
Q psy14299        163 HKMLGAP-LQCSILLIKEKGLL  183 (448)
Q Consensus       163 hK~l~~P-~g~G~l~vr~~~~~  183 (448)
                      .|.++.| .-+|+++. ++++.
T Consensus       209 SK~~~~~GlR~G~~~~-~~~~~  229 (353)
T PRK05387        209 SKSRSLAGLRVGFAIG-HPELI  229 (353)
T ss_pred             hHhhcchhhhceeeec-CHHHH
Confidence            9988755 34677665 33433

>COG3844 Kynureninase [Amino acid transport and metabolism]

Probab=99.70  E-value=2.8e-15  Score=142.68  Aligned_cols=293  Identities=15%  Similarity=0.154  Sum_probs=204.9

Q ss_pred             EEeCcHHHHHHHH-HHHHHHhcCCcccccCCCCCCCeEEEecCCCc-----hHHHHHHHHhCCCCCcEEEEecCCCCCcC
Q psy14299          6 FLLPGGSISNMYS-ICLARYRLDPDTKRKGLSHLPPLCMFTSEDSH-----YSMLKAAHWLGIGMDNVIRVKTNERGQMI   79 (448)
Q Consensus         6 ~~t~ggT~an~~a-l~~a~~~~~~~~~~~G~~~~~~~~Vl~~~~~H-----~s~~~~~~~~g~~~~~v~~v~~~~~g~id   79 (448)
                      +.+.++|..|+.- +.++.+.            .++..|++++..-     |-....|.+++.+        .+-.+.++
T Consensus        96 vvv~dtts~nl~k~L~aalr~------------~~~r~vIv~E~~~fpTdly~a~g~~~~~~~~--------~~~~~~~~  155 (407)
T COG3844          96 VVVTDTTSINLFKVLAAALRP------------QEGRRVIVSEGDNFPTDLYIAEGLADLLGIG--------YDLEGVIA  155 (407)
T ss_pred             eEEeCCcchHHHHHHHHHhcc------------CCCceEEeecCCCCCcchhhhcchhhhhccc--------ccceeeeC
Confidence            3445556666554 4444443            1344556664332     2233444555543        22345668


Q ss_pred             HHHHHHHHHHhhhcCCCcEEEEEeccCCccccccCHHHHHHHHHHcCCEEEEecccccccccccchhhhhcCCCCccEEE
Q psy14299         80 CSFLEQTIQTSLAEKKIPLFVNATAGTTVLGAFDPLDEIATVCEKYDLWMHVDACWGGSLIFSEKYSFVLKGINRANSVS  159 (448)
Q Consensus        80 ~e~Le~~l~~~~~~~~~~~lVv~~~~~t~tG~~~~l~~I~~ia~~~g~~l~VD~A~~~~~~~~~~~~~~~~~~~~aD~~~  159 (448)
                      |.++++++.++      +.+|.++++++-||...|+.+|..++|++|+++..|=||++|..+.+-..      .++|+-+
T Consensus       156 P~~~~~~~~dd------~AvV~L~~V~y~TGql~dm~aiT~~AH~~galv~wDLAHsaGavp~~Lh~------~gaDfai  223 (407)
T COG3844         156 PRALEEAITDD------VAVVLLSHVNYKTGQLLDMRAITALAHQHGALVGWDLAHSAGAVPVDLHA------AGADFAI  223 (407)
T ss_pred             hHHHHHhhccc------eEEEEeccccccccceeeHHHHHHHHHhcCceEEeehhcccCCcceeecc------cCCCeee
Confidence            88999999773      77899999999999999999999999999999999999999999776432      3689999


Q ss_pred             ECCcccc-CCCCceEEEEEeccchhhhhccCCcccccccCcccccccCCCCCcccCCCCchhHHHHHHHHHhChHHHHHH
Q psy14299        160 WNPHKML-GAPLQCSILLIKEKGLLHQANATAATYLFQQDKFYDVSFDTGDKSVQCGRKVDAFKLWLMWKARGNLGFRHF  238 (448)
Q Consensus       160 ~s~hK~l-~~P~g~G~l~vr~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~g~~~~  238 (448)
                      .++||.| ++|.+.+++++.++. .+...+...+|......            ++..+.+.+                  
T Consensus       224 gcsyKYLNgGPGapa~l~v~~~h-~e~~~~~lsgW~gha~p------------f~m~~~y~p------------------  272 (407)
T COG3844         224 GCSYKYLNGGPGAPAGLFVAPRH-RERSWPPLSGWWGHARP------------FAMEEVYAP------------------  272 (407)
T ss_pred             eeeceeccCCCCCceeEEecccc-ccccccccccccCCCCc------------chhhhccCc------------------
Confidence            9999988 458888999997764 23333333344332110            000001000                  


Q ss_pred             HHHhhhhccCCCccchhhhhhhhhhhhhhhhhhhhhhhccccccccccCCCCCcccccc--chhhHHHHHHHHHhcCccH
Q psy14299        239 VDNAVDCSRGSMTFSTLLCFDLQGLLHQANATAATYLFQQDKFYDVSFDTGDKSVQCGR--KVDAFKLWLMWKARGNLGF  316 (448)
Q Consensus       239 i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~G~  316 (448)
                                                                      --+...|.|++  ..++..+..+|+.-...++
T Consensus       273 ------------------------------------------------~~ga~rf~~gt~~V~s~aal~~aLDifa~~~i  304 (407)
T COG3844         273 ------------------------------------------------GPGARRFLCGTQPVLSLAALEGALDIFADVDI  304 (407)
T ss_pred             ------------------------------------------------CccccceeeCCcchhhhHHHhhhhhhhhhcCH
Confidence                                                            01234577777  7788888889999999999


Q ss_pred             HHHHHHHHHHHHHHHHHhhcCC---CeEEeccC----CceeeEEEEeeccCCCccccchhhhhhhhhhhHHHHHHHHhCC
Q psy14299        317 RHFVDNAVDCSRYFLSQISQRP---GFRLVIPE----FQCTNICFWFIPVSLRDKVEDETWWSTLSKVAPRIKEKLVLGG  389 (448)
Q Consensus       317 ~~~~~~~~~l~~~~~~~L~~~p---g~~l~~~~----~~~~~v~f~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~L~~~g  389 (448)
                      .+++++...|+.||.+.++.+-   ++++. .|    .+.+-++|...                   ...++.+.|.++|
T Consensus       305 ~~lR~kSlaLTd~fieLvEa~~~~~~l~l~-tPr~~~~rGsqvS~~hp-------------------~~~~V~qaLi~rG  364 (407)
T COG3844         305 TELRKKSLALTDYFIELVEARCEYYGLTLV-TPRAHEERGSQVSLYHP-------------------HGYQVMQALIDRG  364 (407)
T ss_pred             HHHHHhhhHHHHHHHHHHHhccccCCcEEe-ccchhhhccceeeEecC-------------------cHHHHHHHHHHcC
Confidence            9999999999999999998763   57887 33    35677777542                   1247899999999


Q ss_pred             cEEEEeeecCCcccccEEEEEecCCCCCCHHHHHHHHHHHHHHHHHhH
Q psy14299        390 TLMIGYQPLQHRNLHNFFRLVTTCHPASSRQDMDYAIDQIELRGAEVD  437 (448)
Q Consensus       390 ~~~~~~~~~~g~~~~~~lRis~~~~~~~t~edid~l~~al~~~~~~~~  437 (448)
                      ++    +..+.   ++.+||.++ -.|++.+||=..+++|+++..+..
T Consensus       365 Vi----gD~R~---P~vlRfgft-PlY~~~~DVw~AV~~L~evL~t~a  404 (407)
T COG3844         365 VI----GDFRE---PDVLRFGFT-PLYVSFVDVWDAVDALEEVLDTLA  404 (407)
T ss_pred             cc----ccccC---CCeeeecCc-cceechhHHHHHHHHHHHHHHhhc
Confidence            43    22233   379999998 789999999999999999987643

>PRK04870 histidinol-phosphate aminotransferase; Provisional

Probab=99.70  E-value=5.7e-15  Score=149.10  Aligned_cols=272  Identities=13%  Similarity=0.080  Sum_probs=176.2

Q ss_pred             cEEEeCcHHHHHHHHHHHHHHhcCCcccccCCCCCCCeEEEecCCCchHHHHHHHHhCCCCCcEEEEecCCCCCcCHHHH
Q psy14299          4 KPFLLPGGSISNMYSICLARYRLDPDTKRKGLSHLPPLCMFTSEDSHYSMLKAAHWLGIGMDNVIRVKTNERGQMICSFL   83 (448)
Q Consensus         4 ~g~~t~ggT~an~~al~~a~~~~~~~~~~~G~~~~~~~~Vl~~~~~H~s~~~~~~~~g~~~~~v~~v~~~~~g~id~e~L   83 (448)
                      ..++|+|+++++..++.+...              +++.|+++...+..+...++..|.   +++.+|.++++.+|++++
T Consensus        83 ~I~~t~G~~~~i~~~~~~~~~--------------~gd~vlv~~P~y~~~~~~~~~~g~---~~~~i~~~~~~~~d~~~l  145 (356)
T PRK04870         83 DVLLGNGSDELIQLLALACAK--------------PGATVLAPEPGFVMYRMSAKLAGL---EFVGVPLTADFTLDLPAM  145 (356)
T ss_pred             cEEEcCCHHHHHHHHHHHhcC--------------CCCEEEECCCCHHHHHHHHHHcCC---EEEEecCCCCCCCCHHHH
Confidence            467888888887776655433              567789999999999999999998   799999988889999999


Q ss_pred             HHHHHHhhhcCCCcEEEEEeccCCccccccCHHHHHHHHHHcCCEEEEecccccccccccchhhhhcCCCCccEEEECCc
Q psy14299         84 EQTIQTSLAEKKIPLFVNATAGTTVLGAFDPLDEIATVCEKYDLWMHVDACWGGSLIFSEKYSFVLKGINRANSVSWNPH  163 (448)
Q Consensus        84 e~~l~~~~~~~~~~~lVv~~~~~t~tG~~~~l~~I~~ia~~~g~~l~VD~A~~~~~~~~~~~~~~~~~~~~aD~~~~s~h  163 (448)
                      ++++.+     .++++|++++++|+||.+.+.+++.++++..++++++|++|.....  +.....+.... --+++.|+.
T Consensus       146 ~~~~~~-----~~~~~v~l~~p~NPtG~~~~~~~~~~i~~~~~~~ii~De~y~~~~~--~~~~~~~~~~~-~vi~~~S~S  217 (356)
T PRK04870        146 LAAIAE-----HRPALVFLAYPNNPTGNLFDDADVERIIEAAPGLVVVDEAYQPFAG--DSWLPRLARFP-NLLVMRTVS  217 (356)
T ss_pred             HHHhhc-----CCCCEEEEcCCCCCCCCCCCHHHHHHHHHHCCCEEEEECCchhhcC--cchHHHHhhCC-CEEEEecch
Confidence            999864     2578999999999999999999999988877999999999864321  11111111111 125667888


Q ss_pred             cccCCC-CceEEEEEeccchhhhhccCCcccccccCcccccccCCCCCcccCCCCchhHHHHHHHHHhChHHHHHHHHHh
Q psy14299        164 KMLGAP-LQCSILLIKEKGLLHQANATAATYLFQQDKFYDVSFDTGDKSVQCGRKVDAFKLWLMWKARGNLGFRHFVDNA  242 (448)
Q Consensus       164 K~l~~P-~g~G~l~vr~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~g~~~~i~~~  242 (448)
                      | ++.| .-+|+++..+ .++.........+-                       ...                      
T Consensus       218 K-~~~~GlRiG~~i~~~-~~i~~~~~~~~~~~-----------------------~~~----------------------  250 (356)
T PRK04870        218 K-LGLAGLRLGYLAGHP-AWIAELDKVRPPYN-----------------------VNV----------------------  250 (356)
T ss_pred             h-hhhHHHhhhhhhCCH-HHHHHHHHccCCCc-----------------------CCH----------------------
Confidence            8 4333 1266665533 33332211110000                       000                      


Q ss_pred             hhhccCCCccchhhhhhhhhhhhhhhhhhhhhhhccccccccccCCCCCccccccchhhHHHHHHHHHhcCccHHHHHHH
Q psy14299        243 VDCSRGSMTFSTLLCFDLQGLLHQANATAATYLFQQDKFYDVSFDTGDKSVQCGRKVDAFKLWLMWKARGNLGFRHFVDN  322 (448)
Q Consensus       243 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~  322 (448)
                                                                              +.+.....+++.  .+.+++..++
T Consensus       251 --------------------------------------------------------~~q~~a~~~l~~--~~~~~~~~~~  272 (356)
T PRK04870        251 --------------------------------------------------------LTQATALFALEH--VDVLDAQAAQ  272 (356)
T ss_pred             --------------------------------------------------------HHHHHHHHHHhC--HHHHHHHHHH
Confidence                                                                    000011111211  1124556667


Q ss_pred             HHHHHHHHHHHhhcCCCeEEeccCCceeeEEEEeeccCCCccccchhhhhhhhhhhHHHHHHHHhCCcEEEEeeecCCcc
Q psy14299        323 AVDCSRYFLSQISQRPGFRLVIPEFQCTNICFWFIPVSLRDKVEDETWWSTLSKVAPRIKEKLVLGGTLMIGYQPLQHRN  402 (448)
Q Consensus       323 ~~~l~~~~~~~L~~~pg~~l~~~~~~~~~v~f~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~L~~~g~~~~~~~~~~g~~  402 (448)
                      ..+.++++.+.|+++||+++.  ++..+.+.+.+ +   +               ..++.+.|.++| +.+.+....+..
T Consensus       273 ~~~~~~~l~~~L~~~~~~~~~--~~~~~~~~~~~-~---~---------------~~~~~~~l~~~g-I~v~~~~~f~~~  330 (356)
T PRK04870        273 LRAERTRLAAALAALPGVTVF--PSAANFILVRV-P---D---------------AAAVFDGLKTRG-VLVKNLSGMHPL  330 (356)
T ss_pred             HHHHHHHHHHHHHhCCCcEEC--CCCCeEEEEEC-C---C---------------HHHHHHHHHHCC-EEEEECCCCCCC
Confidence            778888999999999898764  44444433332 1   1               136778888888 445444332222


Q ss_pred             cccEEEEEecCCCCCCHHHHHHHHHHHHHH
Q psy14299        403 LHNFFRLVTTCHPASSRQDMDYAIDQIELR  432 (448)
Q Consensus       403 ~~~~lRis~~~~~~~t~edid~l~~al~~~  432 (448)
                      .++++|+++.     +.+++++|+++|+++
T Consensus       331 ~~~~iRis~~-----~~~~~~~l~~al~~~  355 (356)
T PRK04870        331 LANCLRVTVG-----TPEENAQFLAALKAA  355 (356)
T ss_pred             CCCeEEEeCC-----CHHHHHHHHHHHHHh
Confidence            2479999994     789999999999875

>PRK08064 cystathionine beta-lyase; Provisional

Probab=99.69  E-value=7e-15  Score=150.25  Aligned_cols=145  Identities=14%  Similarity=0.126  Sum_probs=109.9

Q ss_pred             cEEEeCcHHHHHHHHHHHHHHhcCCcccccCCCCCCCeEEEecCCCchHHH----HHHHHhCCCCCcEEEEecCCCCCcC
Q psy14299          4 KPFLLPGGSISNMYSICLARYRLDPDTKRKGLSHLPPLCMFTSEDSHYSML----KAAHWLGIGMDNVIRVKTNERGQMI   79 (448)
Q Consensus         4 ~g~~t~ggT~an~~al~~a~~~~~~~~~~~G~~~~~~~~Vl~~~~~H~s~~----~~~~~~g~~~~~v~~v~~~~~g~id   79 (448)
                      ..+++++|+.++..++. ...              +++.|+++...|.+..    ..++..|+   +++.++.+     |
T Consensus        71 ~~v~~~sG~~ai~~~l~-~l~--------------~Gd~Vlv~~~~y~~~~~~~~~~~~~~G~---~v~~v~~~-----d  127 (390)
T PRK08064         71 KGFAFASGMAAISTAFL-LLS--------------KGDHVLISEDVYGGTYRMITEVLSRFGI---EHTFVDMT-----N  127 (390)
T ss_pred             CeEEECCHHHHHHHHHH-HhC--------------CCCEEEEccCccchHHHHHHHHHHHcCC---EEEEECCC-----C
Confidence            35677888877665553 222              5667888888887544    34445676   68888764     7


Q ss_pred             HHHHHHHHHHhhhcCCCcEEEEEeccCCccccccCHHHHHHHHHHcCCEEEEecccccccccccchhhhhcCCCCccEEE
Q psy14299         80 CSFLEQTIQTSLAEKKIPLFVNATAGTTVLGAFDPLDEIATVCEKYDLWMHVDACWGGSLIFSEKYSFVLKGINRANSVS  159 (448)
Q Consensus        80 ~e~Le~~l~~~~~~~~~~~lVv~~~~~t~tG~~~~l~~I~~ia~~~g~~l~VD~A~~~~~~~~~~~~~~~~~~~~aD~~~  159 (448)
                      ++++++++++      ++++|++++++|++|.+.|+++|.++||++|++++||++++.+....+.      .. ++|+++
T Consensus       128 ~~~l~~~l~~------~tklV~l~~p~NptG~~~dl~~I~~la~~~g~~vvvD~a~~~~~~~~~~------~~-g~Divv  194 (390)
T PRK08064        128 LEEVAQNIKP------NTKLFYVETPSNPLLKVTDIRGVVKLAKAIGCLTFVDNTFLTPLLQKPL------DL-GADVVL  194 (390)
T ss_pred             HHHHHHhcCC------CceEEEEECCCCCCcEeccHHHHHHHHHHcCCEEEEECCCCcccccCch------hh-CCcEEE
Confidence            8889888854      5789999999999999999999999999999999999998866542221      11 479999


Q ss_pred             ECCccccCCCCc--eEEEEEeccchhh
Q psy14299        160 WNPHKMLGAPLQ--CSILLIKEKGLLH  184 (448)
Q Consensus       160 ~s~hK~l~~P~g--~G~l~vr~~~~~~  184 (448)
                      .|+||++++|.+  .|+++++++++..
T Consensus       195 ~S~tK~~~G~~~~laG~~v~~~~~~~~  221 (390)
T PRK08064        195 HSATKFLAGHSDVLAGLAVVKDEELAQ  221 (390)
T ss_pred             eecceeccCCccceeEEEEeCCHHHHH
Confidence            999999999987  4777776654433

>TIGR01328 met_gam_lyase methionine gamma-lyase

Probab=99.69  E-value=6.9e-15  Score=150.33  Aligned_cols=145  Identities=11%  Similarity=0.066  Sum_probs=109.6

Q ss_pred             cEEEeCcHHHHHHHHHHHHHHhcCCcccccCCCCCCCeEEEecCCCchHHH----HHHHHhCCCCCcEEEEecCCCCCcC
Q psy14299          4 KPFLLPGGSISNMYSICLARYRLDPDTKRKGLSHLPPLCMFTSEDSHYSML----KAAHWLGIGMDNVIRVKTNERGQMI   79 (448)
Q Consensus         4 ~g~~t~ggT~an~~al~~a~~~~~~~~~~~G~~~~~~~~Vl~~~~~H~s~~----~~~~~~g~~~~~v~~v~~~~~g~id   79 (448)
                      .++++++|++++..++.+...              +++.|+++...|.+..    ..+...|+   ++..++.+     |
T Consensus        76 ~av~~~sG~~Ai~~~l~al~~--------------~Gd~Vi~~~~~y~~t~~~~~~~~~~~G~---~~~~vd~~-----d  133 (391)
T TIGR01328        76 AAVATSSGMGAIAATLLTILK--------------AGDHLISDECLYGCTFALLEHALTKFGI---QVDFINMA-----I  133 (391)
T ss_pred             cEEEECCHHHHHHHHHHHHhC--------------CCCEEEEecCcchHHHHHHHHHHhcCCe---EEEEECCC-----C
Confidence            368899999998877766533              5667888888775433    33444565   67777764     8


Q ss_pred             HHHHHHHHHHhhhcCCCcEEEEEeccCCccccccCHHHHHHHHHHcCCEEEEecccccccccccchhhhhcCCCCccEEE
Q psy14299         80 CSFLEQTIQTSLAEKKIPLFVNATAGTTVLGAFDPLDEIATVCEKYDLWMHVDACWGGSLIFSEKYSFVLKGINRANSVS  159 (448)
Q Consensus        80 ~e~Le~~l~~~~~~~~~~~lVv~~~~~t~tG~~~~l~~I~~ia~~~g~~l~VD~A~~~~~~~~~~~~~~~~~~~~aD~~~  159 (448)
                      ++++++++++      ++++|++.+++|++|.+.|+++|.++||++|++++||++++.+....+     + . ..+|+++
T Consensus       134 ~e~l~~~i~~------~tklV~le~p~Np~G~v~dl~~I~~la~~~gi~livD~a~a~~~~~~~-----~-~-~g~Divv  200 (391)
T TIGR01328       134 PEEVKAHIKD------NTKIVYFETPANPTMKLIDMERVCRDAHSQGVKVIVDNTFATPMLTNP-----V-A-LGVDVVV  200 (391)
T ss_pred             HHHHHHhhcc------CCeEEEEECCCCCCCcccCHHHHHHHHHHcCCEEEEECCCchhccCCc-----h-h-cCCCEEE
Confidence            9999988854      578999999999999999999999999999999999999986654211     1 1 1589999


Q ss_pred             ECCccccCCCCc--eEEEEEeccchhh
Q psy14299        160 WNPHKMLGAPLQ--CSILLIKEKGLLH  184 (448)
Q Consensus       160 ~s~hK~l~~P~g--~G~l~vr~~~~~~  184 (448)
                      .|++|++++|.+  .|++ +.++++..
T Consensus       201 ~S~sK~lgg~g~~~gG~v-~~~~~li~  226 (391)
T TIGR01328       201 HSATKYIGGHGDVVAGLI-CGKAELLQ  226 (391)
T ss_pred             ccccccccCCCCceEEEE-EcCHHHHH
Confidence            999999998876  3544 44555443

This model describes a methionine gamma-lyase subset of a family of PLP-dependent trans-sulfuration enzymes. The member from the parasite Trichomonas vaginalis is described as catalyzing alpha gamma- and alpha-beta eliminations and gamma-replacement reactions on methionine, cysteine, and some derivatives. Likewise, the enzyme from Pseudomonas degrades cysteine as well as methionine.

>PRK07777 aminotransferase; Validated

Probab=99.69  E-value=1.4e-14  Score=147.83  Aligned_cols=153  Identities=11%  Similarity=-0.006  Sum_probs=113.2

Q ss_pred             cEEEeCcHHHHHHHHHHHHHHhcCCcccccCCCCCCCeEEEecCCCchHHHHHHHHhCCCCCcEEEEecCCC---CCcCH
Q psy14299          4 KPFLLPGGSISNMYSICLARYRLDPDTKRKGLSHLPPLCMFTSEDSHYSMLKAAHWLGIGMDNVIRVKTNER---GQMIC   80 (448)
Q Consensus         4 ~g~~t~ggT~an~~al~~a~~~~~~~~~~~G~~~~~~~~Vl~~~~~H~s~~~~~~~~g~~~~~v~~v~~~~~---g~id~   80 (448)
                      ..++|+|+|+++..++.+...              +++.|+++...|..+..+++..|.   +++.++.+++   +.+|+
T Consensus        87 ~i~~t~G~~~al~~~~~~~~~--------------~gd~vli~~p~y~~~~~~~~~~g~---~~~~~~~~~~~~~~~~d~  149 (387)
T PRK07777         87 EVLVTVGATEAIAAAVLGLVE--------------PGDEVLLIEPYYDSYAAVIAMAGA---HRVPVPLVPDGRGFALDL  149 (387)
T ss_pred             cEEEeCCcHHHHHHHHHHhcC--------------CCCEEEEeCCCchhhHHHHHHCCC---EEEEeecCCccCCCcCCH
Confidence            478999999998777665432              566788888889999889898888   6788887654   46999


Q ss_pred             HHHHHHHHHhhhcCCCcEEEEEeccCCcccccc---CHHHHHHHHHHcCCEEEEecccccccccccchhh--hhcCCCCc
Q psy14299         81 SFLEQTIQTSLAEKKIPLFVNATAGTTVLGAFD---PLDEIATVCEKYDLWMHVDACWGGSLIFSEKYSF--VLKGINRA  155 (448)
Q Consensus        81 e~Le~~l~~~~~~~~~~~lVv~~~~~t~tG~~~---~l~~I~~ia~~~g~~l~VD~A~~~~~~~~~~~~~--~~~~~~~a  155 (448)
                      ++|++.+.+      ++++|++++++|+||...   ++++|.++|++|++++++|.+|+...+.......  ...+....
T Consensus       150 ~~l~~~~~~------~~~~v~l~~p~NPtG~~~~~~~~~~l~~~~~~~~~~li~De~y~~~~~~~~~~~~~~~~~~~~~~  223 (387)
T PRK07777        150 DALRAAVTP------RTRALIVNSPHNPTGTVLTAAELAAIAELAVEHDLLVITDEVYEHLVFDGARHLPLATLPGMRER  223 (387)
T ss_pred             HHHHHhcCc------ccEEEEEcCCCCCCCccCCHHHHHHHHHHHHhcCcEEEEeccchhcccCCCCcccHhhCCCCcCc
Confidence            999998854      478899999999999875   4889999999999999999998754431111000  11122235


Q ss_pred             cEEEECCccccCCCC-ceEEEEEec
Q psy14299        156 NSVSWNPHKMLGAPL-QCSILLIKE  179 (448)
Q Consensus       156 D~~~~s~hK~l~~P~-g~G~l~vr~  179 (448)
                      ++++.|++|.++.|. -+|+++..+
T Consensus       224 ~i~~~S~SK~~g~~GlRiG~~~~~~  248 (387)
T PRK07777        224 TVTISSAAKTFNVTGWKIGWACGPA  248 (387)
T ss_pred             EEEEeechhhccCcCceeEEEecCH
Confidence            688899999998662 257766543

>PRK08960 hypothetical protein; Provisional

Probab=99.69  E-value=1.1e-14  Score=148.61  Aligned_cols=151  Identities=12%  Similarity=0.041  Sum_probs=110.7

Q ss_pred             cEEEeCcHHHHHHHHHHHHHHhcCCcccccCCCCCCCeEEEecCCCchHHHHHHHHhCCCCCcEEEEecCCC--CCcCHH
Q psy14299          4 KPFLLPGGSISNMYSICLARYRLDPDTKRKGLSHLPPLCMFTSEDSHYSMLKAAHWLGIGMDNVIRVKTNER--GQMICS   81 (448)
Q Consensus         4 ~g~~t~ggT~an~~al~~a~~~~~~~~~~~G~~~~~~~~Vl~~~~~H~s~~~~~~~~g~~~~~v~~v~~~~~--g~id~e   81 (448)
                      ..++|+|+++++.+++.+...              +++.|++++.+|.++...++..|.   +++.++.+++  +.+|++
T Consensus        94 ~i~it~G~~~al~~~~~~~~~--------------~gd~vlv~~p~y~~~~~~~~~~g~---~~~~v~~~~~~~~~~d~~  156 (387)
T PRK08960         94 RILVTPGGSGALLLASSLLVD--------------PGKHWLLADPGYPCNRHFLRLVEG---AAQLVPVGPDSRYQLTPA  156 (387)
T ss_pred             hEEEccCcHHHHHHHHHHhcC--------------CCCEEEEcCCCCcchHHHHHhcCC---eEEEEecCcccCCCCCHH
Confidence            468999999998777765433              667899999999999999998888   6888888654  479999


Q ss_pred             HHHHHHHHhhhcCCCcEEEEEeccCCccccccC---HHHHHHHHHHcCCEEEEecccccccccccchhhhhcCCCCccEE
Q psy14299         82 FLEQTIQTSLAEKKIPLFVNATAGTTVLGAFDP---LDEIATVCEKYDLWMHVDACWGGSLIFSEKYSFVLKGINRANSV  158 (448)
Q Consensus        82 ~Le~~l~~~~~~~~~~~lVv~~~~~t~tG~~~~---l~~I~~ia~~~g~~l~VD~A~~~~~~~~~~~~~~~~~~~~aD~~  158 (448)
                      ++++.+++      +++++++++++|+||...+   +++|+++|++||+++++|++|...... +.... ...+..--++
T Consensus       157 ~l~~~~~~------~~~~i~i~~p~NPtG~~~~~~~~~~l~~~~~~~~~~li~De~Y~~~~~~-~~~~~-~~~~~~~vi~  228 (387)
T PRK08960        157 LVERHWNA------DTVGALVASPANPTGTLLSRDELAALSQALRARGGHLVVDEIYHGLTYG-VDAAS-VLEVDDDAFV  228 (387)
T ss_pred             HHHHHhCc------cceEEEEECCCCCCCcCcCHHHHHHHHHHHHHcCCEEEEEccccccccC-CCCCC-hhhccCCEEE
Confidence            99998864      4678889999999999877   556777899999999999998754321 11111 1112111256


Q ss_pred             EECCccccCCC-CceEEEEEec
Q psy14299        159 SWNPHKMLGAP-LQCSILLIKE  179 (448)
Q Consensus       159 ~~s~hK~l~~P-~g~G~l~vr~  179 (448)
                      ..|++|.++.| .-+|+++..+
T Consensus       229 ~~S~SK~~g~~GlRiG~~~~~~  250 (387)
T PRK08960        229 LNSFSKYFGMTGWRLGWLVAPP  250 (387)
T ss_pred             EeecccccCCcccEEEEEEcCH
Confidence            67899988744 2277777643

>TIGR01324 cysta_beta_ly_B cystathionine beta-lyase, bacterial

Probab=99.69  E-value=4.8e-15  Score=150.62  Aligned_cols=141  Identities=13%  Similarity=0.119  Sum_probs=107.1

Q ss_pred             cEEEeCcHHHHHHHHHHHHHHhcCCcccccCCCCCCCeEEEecCCCchHHHHHH----HHhCCCCCcEEEEecCCCCCcC
Q psy14299          4 KPFLLPGGSISNMYSICLARYRLDPDTKRKGLSHLPPLCMFTSEDSHYSMLKAA----HWLGIGMDNVIRVKTNERGQMI   79 (448)
Q Consensus         4 ~g~~t~ggT~an~~al~~a~~~~~~~~~~~G~~~~~~~~Vl~~~~~H~s~~~~~----~~~g~~~~~v~~v~~~~~g~id   79 (448)
                      .+++++||+.|+..++.+...              +++.|++++..+......+    ...|+   ++..++.+     +
T Consensus        67 ~~~~~~sG~~Ai~~al~all~--------------~GD~Vl~~~~~y~~t~~~~~~~~~~~gi---~v~~~d~~-----~  124 (377)
T TIGR01324        67 GCYLYPSGLAAVTNSILAFVK--------------AGDHVLMVDSAYEPTRYFCDIVLKRMGV---DITYYDPL-----I  124 (377)
T ss_pred             cEEEECcHHHHHHHHHHHhcC--------------CCCEEEEcCCCcHHHHHHHHHHHHhcCc---EEEEECCC-----C
Confidence            578999999999888876533              6677888877776655433    33455   56655432     2


Q ss_pred             HHHHHHHHHHhhhcCCCcEEEEEeccCCccccccCHHHHHHHHHHcCCEEEEecccccccccccchhhhhcCCCCccEEE
Q psy14299         80 CSFLEQTIQTSLAEKKIPLFVNATAGTTVLGAFDPLDEIATVCEKYDLWMHVDACWGGSLIFSEKYSFVLKGINRANSVS  159 (448)
Q Consensus        80 ~e~Le~~l~~~~~~~~~~~lVv~~~~~t~tG~~~~l~~I~~ia~~~g~~l~VD~A~~~~~~~~~~~~~~~~~~~~aD~~~  159 (448)
                      .+++++++++      ++++|++++++|++|.+.|+++|+++||++|++++||++|+.+...-+.      . .++|+++
T Consensus       125 ~e~l~~~i~~------~tklV~lesp~Np~g~~~dl~~I~~la~~~g~~livD~t~a~g~~~~pl------~-~gaDivv  191 (377)
T TIGR01324       125 GEDIATLIQP------NTKVLFLEAPSSITFEIQDIPAIAKAARNPGIVIMIDNTWAAGLLFKPL------E-HGVDISI  191 (377)
T ss_pred             HHHHHHhcCC------CceEEEEECCCCCCCcHHHHHHHHHHHHHcCCEEEEECCCccccccCcc------c-cCceEEE
Confidence            3778887754      5899999999999999999999999999999999999999988763221      1 1589999


Q ss_pred             ECCccccCCCCc--eEEEEEec
Q psy14299        160 WNPHKMLGAPLQ--CSILLIKE  179 (448)
Q Consensus       160 ~s~hK~l~~P~g--~G~l~vr~  179 (448)
                      .|.|||++++.+  .|+++.++
T Consensus       192 ~S~tK~l~G~~d~~gG~v~~~~  213 (377)
T TIGR01324       192 QAGTKYLVGHSDIMIGTVVANA  213 (377)
T ss_pred             ecCceeccCCCCceEEEEEeCH
Confidence            999999999875  45555433

This model represents cystathionine beta-lyase (alternate name: beta-cystathionase), one of several pyridoxal-dependent enzymes of cysteine, methionine, and homocysteine metabolism. This enzyme is involved in the biosynthesis of Met from Cys.

>PRK04635 histidinol-phosphate aminotransferase; Provisional

Probab=99.69  E-value=4.1e-15  Score=150.11  Aligned_cols=149  Identities=14%  Similarity=0.025  Sum_probs=108.3

Q ss_pred             cEEEeCcHHHHHHHHHHHHHHhcCCcccccCCCCCCC-eEEEecCCCchHHHHHHHHhCCCCCcEEEEecCCCCCcCHHH
Q psy14299          4 KPFLLPGGSISNMYSICLARYRLDPDTKRKGLSHLPP-LCMFTSEDSHYSMLKAAHWLGIGMDNVIRVKTNERGQMICSF   82 (448)
Q Consensus         4 ~g~~t~ggT~an~~al~~a~~~~~~~~~~~G~~~~~~-~~Vl~~~~~H~s~~~~~~~~g~~~~~v~~v~~~~~g~id~e~   82 (448)
                      ..++|+|+++++.+++.+...              ++ +.|+++...+..+...++..|.   +++.+|.++++.+|++.
T Consensus        79 ~I~it~Gs~~~i~~~~~~~~~--------------~g~d~vlv~~P~y~~y~~~~~~~g~---~v~~v~~~~~~~~~~~~  141 (354)
T PRK04635         79 QILTSRGADEAIELLIRAFCE--------------PGQDSIACFGPTYGMYAISAETFNV---GVKALPLTADYQLPLDY  141 (354)
T ss_pred             HEEEeCCHHHHHHHHHHHhcC--------------CCCCeEEEcCCChHHHHHHHHHcCC---EEEEEecCCCCCCCHHH
Confidence            468999999998887766543              34 6788888888888888888888   79999998778899998


Q ss_pred             HHHHHHHhhhcCCCcEEEEEeccCCccccccCHHHHHHHHHHc-CCEEEEecccccccccccchhhhhcCCCCccEEEEC
Q psy14299         83 LEQTIQTSLAEKKIPLFVNATAGTTVLGAFDPLDEIATVCEKY-DLWMHVDACWGGSLIFSEKYSFVLKGINRANSVSWN  161 (448)
Q Consensus        83 Le~~l~~~~~~~~~~~lVv~~~~~t~tG~~~~l~~I~~ia~~~-g~~l~VD~A~~~~~~~~~~~~~~~~~~~~aD~~~~s  161 (448)
                      +++ + +      ++++|++++++|+||.+.|.+++.++++.. ++++++|++|.-.... ............ =+++.+
T Consensus       142 l~~-~-~------~~~li~i~nP~NPTG~~~~~~~l~~l~~~~~~~~vivDeay~~~~~~-~s~~~~~~~~~~-~iv~~S  211 (354)
T PRK04635        142 IEQ-L-D------GAKLVFICNPNNPTGTVIDRADIEQLIEMTPDAIVVVDEAYIEFCPE-YSVADLLASYPN-LVVLRT  211 (354)
T ss_pred             HHh-c-c------CCCEEEEeCCCCCCCccCCHHHHHHHHHhCCCcEEEEeCchHhhccC-cchHHHHhhCCC-EEEEec
Confidence            863 3 1      478999999999999999999999999874 7999999998643211 110011111111 146678


Q ss_pred             CccccCCC-CceEEEEEec
Q psy14299        162 PHKMLGAP-LQCSILLIKE  179 (448)
Q Consensus       162 ~hK~l~~P-~g~G~l~vr~  179 (448)
                      ++|+++.| ..+|+++.++
T Consensus       212 ~SK~~~l~GlRlG~~i~~~  230 (354)
T PRK04635        212 LSKAFALAGARCGFTLANE  230 (354)
T ss_pred             hHHHhhhhHHHHhhhhCCH
Confidence            99998633 3367776643

>PRK06348 aspartate aminotransferase; Provisional

Probab=99.69  E-value=1.8e-14  Score=147.11  Aligned_cols=152  Identities=16%  Similarity=0.128  Sum_probs=111.2

Q ss_pred             cEEEeCcHHHHHHHHHHHHHHhcCCcccccCCCCCCCeEEEecCCCchHHHHHHHHhCCCCCcEEEEecC--CCCCcCHH
Q psy14299          4 KPFLLPGGSISNMYSICLARYRLDPDTKRKGLSHLPPLCMFTSEDSHYSMLKAAHWLGIGMDNVIRVKTN--ERGQMICS   81 (448)
Q Consensus         4 ~g~~t~ggT~an~~al~~a~~~~~~~~~~~G~~~~~~~~Vl~~~~~H~s~~~~~~~~g~~~~~v~~v~~~--~~g~id~e   81 (448)
                      ..++|+|+++++.+++.+...              +++.|+++...+..+...++..|.   +++.++..  +++.+|++
T Consensus        91 ~i~it~G~~~al~~~~~~~~~--------------~gd~vlv~~p~y~~~~~~~~~~g~---~~~~~~~~~~~~~~~d~~  153 (384)
T PRK06348         91 EIMATVGACHGMYLALQSILD--------------PGDEVIIHEPYFTPYKDQIEMVGG---KPIILETYEEDGFQINVK  153 (384)
T ss_pred             hEEEcCChHHHHHHHHHHhcC--------------CCCEEEEeCCCCcchHHHHHHcCC---EEEEecCCcCcCCcCCHH
Confidence            468999999998887776544              566789999999999999998888   67788763  34579999


Q ss_pred             HHHHHHHHhhhcCCCcEEEEEeccCCccccccC---HHHHHHHHHHcCCEEEEecccccccccccchh-hhhcCCCCccE
Q psy14299         82 FLEQTIQTSLAEKKIPLFVNATAGTTVLGAFDP---LDEIATVCEKYDLWMHVDACWGGSLIFSEKYS-FVLKGINRANS  157 (448)
Q Consensus        82 ~Le~~l~~~~~~~~~~~lVv~~~~~t~tG~~~~---l~~I~~ia~~~g~~l~VD~A~~~~~~~~~~~~-~~~~~~~~aD~  157 (448)
                      +|++.+++      ++++|+++.++|+||.+.+   +++|.++|++||+++++|.+|+......+... ..+.+...-.+
T Consensus       154 ~l~~~~~~------~~~~v~l~~p~NPtG~~~s~~~~~~l~~~a~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~vi  227 (384)
T PRK06348        154 KLEALITS------KTKAIILNSPNNPTGAVFSKETLEEIAKIAIEYDLFIISDEVYDGFSFYEDFVPMATLAGMPERTI  227 (384)
T ss_pred             HHHHhhCc------CccEEEEeCCCCCCCcCCCHHHHHHHHHHHHHCCeEEEEecccccceeCCCccchhhcCCCcCcEE
Confidence            99998853      4678888899999998865   78888999999999999999886543211000 00111111236


Q ss_pred             EEECCccccCCC-CceEEEEEe
Q psy14299        158 VSWNPHKMLGAP-LQCSILLIK  178 (448)
Q Consensus       158 ~~~s~hK~l~~P-~g~G~l~vr  178 (448)
                      ++.|+.|.++.| .-+|+++..
T Consensus       228 ~~~SfSK~~~l~GlRiG~~v~~  249 (384)
T PRK06348        228 TFGSFSKDFAMTGWRIGYVIAP  249 (384)
T ss_pred             EEecchhccCCccccceeeecC
Confidence            667889988744 346666653

>PRK00854 rocD ornithine--oxo-acid transaminase; Reviewed

Probab=99.69  E-value=2.2e-14  Score=147.15  Aligned_cols=159  Identities=16%  Similarity=0.110  Sum_probs=103.5

Q ss_pred             cEEEeCcHHHHHHHHHHHHHHhcCCcccccCCCCCCCeEEEecCCCchHHHHHHHHhCCC---------CCcEEEEecCC
Q psy14299          4 KPFLLPGGSISNMYSICLARYRLDPDTKRKGLSHLPPLCMFTSEDSHYSMLKAAHWLGIG---------MDNVIRVKTNE   74 (448)
Q Consensus         4 ~g~~t~ggT~an~~al~~a~~~~~~~~~~~G~~~~~~~~Vl~~~~~H~s~~~~~~~~g~~---------~~~v~~v~~~~   74 (448)
                      .++|+++||+||..|+.+++....   ++.|.+...+.+|.++...|-+...+....+-.         ...+..+|.+ 
T Consensus       100 ~~~~~~SGs~A~e~al~~a~~~~~---~~~g~~~~~~~vi~~~~~~HG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-  175 (401)
T PRK00854        100 KVLPMNSGAEAVETAIKAVRKWGY---EVKGVPEGQAEIIVCADNFHGRTLSIVGFSTDPDARGGFGPFTPGFRVVPFG-  175 (401)
T ss_pred             EEEEeCCcHHHHHHHHHHHHHHHH---hccCCCCCCceEEEECCCcCCccHHHHhccCCccccccCCCCCCCeEEeCCC-
Confidence            479999999999999999876410   112332122356666777787655443221100         0123444433 


Q ss_pred             CCCcCHHHHHHHHHHhhhcCCCcEEEEEeccCCccccccC----HHHHHHHHHHcCCEEEEecccccccccccc-hhhhh
Q psy14299         75 RGQMICSFLEQTIQTSLAEKKIPLFVNATAGTTVLGAFDP----LDEIATVCEKYDLWMHVDACWGGSLIFSEK-YSFVL  149 (448)
Q Consensus        75 ~g~id~e~Le~~l~~~~~~~~~~~lVv~~~~~t~tG~~~~----l~~I~~ia~~~g~~l~VD~A~~~~~~~~~~-~~~~~  149 (448)
                          |+++|++.+.+      ++++|+++++.+++|.+.|    +++|.++|++||+++++|++|.+ ...... +....
T Consensus       176 ----d~~~le~~i~~------~~~aii~e~~~~~~G~~~~~~~~l~~l~~l~~~~gi~lI~DEv~~g-~g~~g~~~~~~~  244 (401)
T PRK00854        176 ----DAEALEAAITP------NTVAFLVEPIQGEAGVIIPPAGYFTRVRELCTANNVTLILDEIQTG-LGRTGKLLAEEH  244 (401)
T ss_pred             ----CHHHHHHHhCC------CeEEEEEccccCCCCCcCCCHHHHHHHHHHHHHcCCEEEEechhhC-CCCCchHhHHhh
Confidence                89999998853      5789999999999999887    99999999999999999999973 221111 11111


Q ss_pred             cCCCCccEEEECCccccCCCC-ceEEEEEecc
Q psy14299        150 KGINRANSVSWNPHKMLGAPL-QCSILLIKEK  180 (448)
Q Consensus       150 ~~~~~aD~~~~s~hK~l~~P~-g~G~l~vr~~  180 (448)
                      .++ ..|.++++  |++++-. ..|++..+++
T Consensus       245 ~g~-~~D~~~~~--K~l~gg~~~ig~v~~~~~  273 (401)
T PRK00854        245 EGI-EADVTLIG--KALSGGFYPVSAVLSNSE  273 (401)
T ss_pred             cCC-CCCEEEec--ccccCCccCeEEEEEcHH
Confidence            232 35888774  9887542 3566666443

>cd00610 OAT_like Acetyl ornithine aminotransferase family

Probab=99.69  E-value=1.9e-14  Score=147.85  Aligned_cols=159  Identities=19%  Similarity=0.152  Sum_probs=107.7

Q ss_pred             cEEEeCcHHHHHHHHHHHHHHhcCCcccccCCCCCCCeEEEecCCCchHHHHHHHHhCCC---------CCcEEEEecCC
Q psy14299          4 KPFLLPGGSISNMYSICLARYRLDPDTKRKGLSHLPPLCMFTSEDSHYSMLKAAHWLGIG---------MDNVIRVKTNE   74 (448)
Q Consensus         4 ~g~~t~ggT~an~~al~~a~~~~~~~~~~~G~~~~~~~~Vl~~~~~H~s~~~~~~~~g~~---------~~~v~~v~~~~   74 (448)
                      .++|++|||++|..++..++...           ..+.+++.+...|.+...+....+..         ..++..+|.++
T Consensus        98 ~v~~~~sgsea~~~al~~~~~~~-----------~~~~ii~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  166 (413)
T cd00610          98 KVFFVNSGTEAVEAALKLARAYT-----------GRKKIISFEGAYHGRTLGALSLTGSKKYRGGFGPLLPGVLHVPYPY  166 (413)
T ss_pred             EEEEcCcHHHHHHHHHHHHHHHc-----------CCCeEEEECCCcCCccHHHHHhcCCccccccCCCCCCCcEEeCCCc
Confidence            57899999999999999887531           13445666667787766665544321         11356677653


Q ss_pred             ------CCCcCHHHHHHHHHHhhhcCCCcEEEEEeccCCccccccC----HHHHHHHHHHcCCEEEEecccccccccccc
Q psy14299         75 ------RGQMICSFLEQTIQTSLAEKKIPLFVNATAGTTVLGAFDP----LDEIATVCEKYDLWMHVDACWGGSLIFSEK  144 (448)
Q Consensus        75 ------~g~id~e~Le~~l~~~~~~~~~~~lVv~~~~~t~tG~~~~----l~~I~~ia~~~g~~l~VD~A~~~~~~~~~~  144 (448)
                            +...|+++|++.+++.   +.++.+++++...+++|.+.|    +++|.++|++||+++++|++|++.......
T Consensus       167 ~~~~~~~~~~d~~~l~~~l~~~---~~~~~~vi~~p~~~~~G~~~~~~~~l~~l~~l~~~~~~~li~Dev~~g~g~~g~~  243 (413)
T cd00610         167 RYRPPAELADDLEALEEALEEH---PEEVAAVIVEPIQGEGGVIVPPPGYLKALRELCRKHGILLIADEVQTGFGRTGKM  243 (413)
T ss_pred             cccchhhHHHHHHHHHHHHhcC---CCCEEEEEEccccCCCCCccCCHHHHHHHHHHHHHcCCEEEEeccccCCCcCcch
Confidence                  2344889999988652   235678888888888898887    999999999999999999998753111111


Q ss_pred             hhhhhcCCCCccEEEECCccccCCCCceEEEEEec
Q psy14299        145 YSFVLKGINRANSVSWNPHKMLGAPLQCSILLIKE  179 (448)
Q Consensus       145 ~~~~~~~~~~aD~~~~s~hK~l~~P~g~G~l~vr~  179 (448)
                      ......++ ..|.++++  |+++++..+|+++.++
T Consensus       244 ~~~~~~~~-~~d~~t~s--K~l~~g~~~g~~~~~~  275 (413)
T cd00610         244 FAFEHFGV-EPDIVTLG--KGLGGGLPLGAVLGRE  275 (413)
T ss_pred             hhHhhcCC-CCCeEEEc--ccccCccccEEEEEcH
Confidence            01111122 25766554  9998877788887644

This family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). The major groups in this CD correspond to ornithine aminotransferase, acetylornithine aminotransferase, alanine-glyoxylate aminotransferase, dialkylglycine decarboxylase, 4-aminobutyrate aminotransferase, beta-alanine-pyruvate aminotransferase, adenosylmethionine-8-amino-7-oxononanoate aminotransferase, and glutamate-1-semialdehyde 2,1-aminomutase. All the enzymes belonging to this family act on basic amino acids and their derivatives are involved in transamination or decarboxylation.

>PRK09028 cystathionine beta-lyase; Provisional

Probab=99.68  E-value=1.1e-14  Score=148.25  Aligned_cols=132  Identities=8%  Similarity=0.082  Sum_probs=103.0

Q ss_pred             cEEEeCcHHHHHHHHHHHHHHhcCCcccccCCCCCCCeEEEecCCCchHHHHHH----HHhCCCCCcEEEEecCCCCCcC
Q psy14299          4 KPFLLPGGSISNMYSICLARYRLDPDTKRKGLSHLPPLCMFTSEDSHYSMLKAA----HWLGIGMDNVIRVKTNERGQMI   79 (448)
Q Consensus         4 ~g~~t~ggT~an~~al~~a~~~~~~~~~~~G~~~~~~~~Vl~~~~~H~s~~~~~----~~~g~~~~~v~~v~~~~~g~id   79 (448)
                      .+++++||++|+..++.+..+              +++.|++++..|......+    ...|+   ++..++.+     +
T Consensus        78 ~~~~~~sG~~Ai~~~l~all~--------------~GD~Vvv~~~~Y~~t~~l~~~~l~~~Gi---~v~~v~~~-----~  135 (394)
T PRK09028         78 GTALYPSGAAAISNALLSFLK--------------AGDHLLMVDSCYEPTRDLCDKILKGFGI---ETTYYDPM-----I  135 (394)
T ss_pred             cEEEECCHHHHHHHHHHHHhC--------------CCCEEEEECCCcHHHHHHHHHhhhhcce---EEEEECCC-----C
Confidence            578999999998888766543              6677888888887766533    23444   56555533     5


Q ss_pred             HHHHHHHHHHhhhcCCCcEEEEEeccCCccccccCHHHHHHHHHHcCCEEEEecccccccccccchhhhhcCCCCccEEE
Q psy14299         80 CSFLEQTIQTSLAEKKIPLFVNATAGTTVLGAFDPLDEIATVCEKYDLWMHVDACWGGSLIFSEKYSFVLKGINRANSVS  159 (448)
Q Consensus        80 ~e~Le~~l~~~~~~~~~~~lVv~~~~~t~tG~~~~l~~I~~ia~~~g~~l~VD~A~~~~~~~~~~~~~~~~~~~~aD~~~  159 (448)
                      .+.+++++++      ++++|++++++|++|.+.|+++|+++||++|++++||.+|+.+....+ ..     + ++|+++
T Consensus       136 ~e~l~~~l~~------~TklV~lespsNPtg~v~dl~~I~~la~~~g~~lvvD~t~a~p~~~~P-l~-----~-GaDivv  202 (394)
T PRK09028        136 GEGIRELIRP------NTKVLFLESPGSITMEVQDVPTLSRIAHEHDIVVMLDNTWASPINSRP-FE-----M-GVDISI  202 (394)
T ss_pred             HHHHHHhcCc------CceEEEEECCCCCCCcHHHHHHHHHHHHHcCCEEEEECCccccccCCc-cc-----c-CceEEE
Confidence            6778888754      589999999999999999999999999999999999999987653211 11     1 589999


Q ss_pred             ECCccccCCCC
Q psy14299        160 WNPHKMLGAPL  170 (448)
Q Consensus       160 ~s~hK~l~~P~  170 (448)
                      .|.|||+++|.
T Consensus       203 ~S~tK~l~Gh~  213 (394)
T PRK09028        203 QAATKYIVGHS  213 (394)
T ss_pred             EeCCeEecCCC
Confidence            99999999984

>PRK07568 aspartate aminotransferase; Provisional

Probab=99.68  E-value=1.7e-14  Score=147.63  Aligned_cols=156  Identities=19%  Similarity=0.181  Sum_probs=108.6

Q ss_pred             cEEEeCcHHHHHHHHHHHHHHhcCCcccccCCCCCCCeEEEecCCCchHHHHHHHHhCCCCCcEEEEecCC-CC-C-cCH
Q psy14299          4 KPFLLPGGSISNMYSICLARYRLDPDTKRKGLSHLPPLCMFTSEDSHYSMLKAAHWLGIGMDNVIRVKTNE-RG-Q-MIC   80 (448)
Q Consensus         4 ~g~~t~ggT~an~~al~~a~~~~~~~~~~~G~~~~~~~~Vl~~~~~H~s~~~~~~~~g~~~~~v~~v~~~~-~g-~-id~   80 (448)
                      ..++|+|+|+++.+++.....              +++.|+++...+..+...++..|.   ++..++.+. ++ . .++
T Consensus        90 ~i~~t~G~~~al~~~~~~l~~--------------~gd~Vl~~~p~y~~~~~~~~~~g~---~~~~v~~~~~~g~~~~~~  152 (397)
T PRK07568         90 EILITNGGSEAILFAMMAICD--------------PGDEILVPEPFYANYNGFATSAGV---KIVPVTTKIEEGFHLPSK  152 (397)
T ss_pred             eEEEcCChHHHHHHHHHHhcC--------------CCCEEEEecCCCccHHHHHHHcCC---EEEEeecCcccCCCCCCH
Confidence            468999999998877765433              566788887777777777788888   788888753 33 3 367


Q ss_pred             HHHHHHHHHhhhcCCCcEEEEEeccCCccccccC---HHHHHHHHHHcCCEEEEecccccccccccchhh--hhcCCCCc
Q psy14299         81 SFLEQTIQTSLAEKKIPLFVNATAGTTVLGAFDP---LDEIATVCEKYDLWMHVDACWGGSLIFSEKYSF--VLKGINRA  155 (448)
Q Consensus        81 e~Le~~l~~~~~~~~~~~lVv~~~~~t~tG~~~~---l~~I~~ia~~~g~~l~VD~A~~~~~~~~~~~~~--~~~~~~~a  155 (448)
                      ++|++++++      ++++|++++++|+||.+.+   +++|+++|+++|+++++|++++...........  .+.+...-
T Consensus       153 ~~l~~~~~~------~~~~v~i~~p~NPtG~~~~~~~~~~i~~~~~~~~~~ii~De~y~~~~~~~~~~~s~~~~~~~~~~  226 (397)
T PRK07568        153 EEIEKLITP------KTKAILISNPGNPTGVVYTKEELEMLAEIAKKHDLFLISDEVYREFVYDGLKYTSALSLEGLEDR  226 (397)
T ss_pred             HHHHHhcCc------cceEEEEECCCCCCCccCCHHHHHHHHHHHHHCCcEEEEeccchhcccCCCCccChhhcCCCcCC
Confidence            889888754      4788999999999998875   788999999999999999998854331111111  01111111


Q ss_pred             cEEEECCccccCCC-CceEEEEEeccch
Q psy14299        156 NSVSWNPHKMLGAP-LQCSILLIKEKGL  182 (448)
Q Consensus       156 D~~~~s~hK~l~~P-~g~G~l~vr~~~~  182 (448)
                      -+++.|.+|.++.| .-+|+++..++++
T Consensus       227 ~i~~~S~SK~~~~~G~R~G~~~~~~~~~  254 (397)
T PRK07568        227 VIIIDSVSKRYSACGARIGCLISKNKEL  254 (397)
T ss_pred             EEEEecchhhccCCCcceEEEecCCHHH
Confidence            25667899988754 4477766644443

>PLN03026 histidinol-phosphate aminotransferase; Provisional

Probab=99.68  E-value=2e-14  Score=146.49  Aligned_cols=149  Identities=13%  Similarity=0.006  Sum_probs=109.5

Q ss_pred             cEEEeCcHHHHHHHHHHHHHHhcCCcccccCCCCCCCeEEEecCCCchHHHHHHHHhCCCCCcEEEEecCCCCCcCHHHH
Q psy14299          4 KPFLLPGGSISNMYSICLARYRLDPDTKRKGLSHLPPLCMFTSEDSHYSMLKAAHWLGIGMDNVIRVKTNERGQMICSFL   83 (448)
Q Consensus         4 ~g~~t~ggT~an~~al~~a~~~~~~~~~~~G~~~~~~~~Vl~~~~~H~s~~~~~~~~g~~~~~v~~v~~~~~g~id~e~L   83 (448)
                      ..++|+|+++++.+++.+...              +++.|+++...+..+...++..|.   ++..++.++++.+|+++|
T Consensus       105 ~I~~t~Ga~~~i~~~~~~~~~--------------~gd~Vlv~~P~y~~y~~~~~~~g~---~~~~v~~~~~~~~d~~~l  167 (380)
T PLN03026        105 NILVGCGADELIDLLMRCVLD--------------PGDKIIDCPPTFGMYVFDAAVNGA---EVIKVPRTPDFSLDVPRI  167 (380)
T ss_pred             hEEEcCCHHHHHHHHHHHhcC--------------CCCEEEEcCCChHHHHHHHHHcCC---EEEEeecCCCCCcCHHHH
Confidence            468899999998777655433              566788888888778788888888   788999877889999999


Q ss_pred             HHHHHHhhhcCCCcEEEEEeccCCccccccCHHHHHHHHHHcCCEEEEecccccccccccchhhhhcCCCCccEEEECCc
Q psy14299         84 EQTIQTSLAEKKIPLFVNATAGTTVLGAFDPLDEIATVCEKYDLWMHVDACWGGSLIFSEKYSFVLKGINRANSVSWNPH  163 (448)
Q Consensus        84 e~~l~~~~~~~~~~~lVv~~~~~t~tG~~~~l~~I~~ia~~~g~~l~VD~A~~~~~~~~~~~~~~~~~~~~aD~~~~s~h  163 (448)
                      ++.+..     .++++|++++++|+||.+.|.+++.++++.. +++++|++|.-.... ......+... .-.+++.++.
T Consensus       168 ~~~~~~-----~~~~~v~l~~P~NPTG~~~~~~~l~~l~~~~-~~vi~DeaY~~~~~~-~~~~~~~~~~-~~viv~~SfS  239 (380)
T PLN03026        168 VEAVET-----HKPKLLFLTSPNNPDGSIISDDDLLKILELP-ILVVLDEAYIEFSTQ-ESRMKWVKKY-DNLIVLRTFS  239 (380)
T ss_pred             HHHHhc-----cCCcEEEEeCCCCCCCCCCCHHHHHHHHhcC-CEEEEECcchhhcCC-cchHHHHHhC-CCEEEEecch
Confidence            998843     2578999999999999999999999999865 999999998643221 0000111111 1236778999


Q ss_pred             cccCCC-CceEEEEE
Q psy14299        164 KMLGAP-LQCSILLI  177 (448)
Q Consensus       164 K~l~~P-~g~G~l~v  177 (448)
                      |.++.| .-+|+++.
T Consensus       240 K~~glaGlRiGy~~~  254 (380)
T PLN03026        240 KRAGLAGLRVGYGAF  254 (380)
T ss_pred             HhhcCccccceeeec
Confidence            988744 23566554

>PRK07811 cystathionine gamma-synthase; Provisional

Probab=99.68  E-value=1.8e-14  Score=147.24  Aligned_cols=147  Identities=11%  Similarity=0.040  Sum_probs=110.1

Q ss_pred             cEEEeCcHHHHHHHHHHHHHHhcCCcccccCCCCCCCeEEEecCCCchHHHHHHHH-hCCCCCcEEEEecCCCCCcCHHH
Q psy14299          4 KPFLLPGGSISNMYSICLARYRLDPDTKRKGLSHLPPLCMFTSEDSHYSMLKAAHW-LGIGMDNVIRVKTNERGQMICSF   82 (448)
Q Consensus         4 ~g~~t~ggT~an~~al~~a~~~~~~~~~~~G~~~~~~~~Vl~~~~~H~s~~~~~~~-~g~~~~~v~~v~~~~~g~id~e~   82 (448)
                      .++.+++|++++..++.+...              +++.|+++...|.+....... ...-..++..++.     .|+++
T Consensus        78 ~~i~~~sG~~Ai~~~l~all~--------------~Gd~Vl~~~~~y~~t~~~~~~~~~~~gi~~~~~d~-----~d~e~  138 (388)
T PRK07811         78 YGRAFSSGMAATDCLLRAVLR--------------PGDHIVIPNDAYGGTFRLIDKVFTRWGVEYTPVDL-----SDLDA  138 (388)
T ss_pred             ceEEeCCHHHHHHHHHHHHhC--------------CCCEEEEcCCCchHHHHHHHHhCcCCCeEEEEeCC-----CCHHH
Confidence            356778889998888876643              567788898888865544332 2111114555543     48999


Q ss_pred             HHHHHHHhhhcCCCcEEEEEeccCCccccccCHHHHHHHHHHcCCEEEEecccccccccccchhhhhcCCCCccEEEECC
Q psy14299         83 LEQTIQTSLAEKKIPLFVNATAGTTVLGAFDPLDEIATVCEKYDLWMHVDACWGGSLIFSEKYSFVLKGINRANSVSWNP  162 (448)
Q Consensus        83 Le~~l~~~~~~~~~~~lVv~~~~~t~tG~~~~l~~I~~ia~~~g~~l~VD~A~~~~~~~~~~~~~~~~~~~~aD~~~~s~  162 (448)
                      +++++++      ++++|+++.++|++|.+.|+++|+++||++|+++++|++++.+....+.      . .++|+++.|+
T Consensus       139 l~~~i~~------~tklV~ie~p~NPtg~~~dl~~I~~la~~~gi~lIvD~a~a~~~~~~p~------~-~gaDivv~S~  205 (388)
T PRK07811        139 VRAAITP------RTKLIWVETPTNPLLSITDIAALAELAHDAGAKVVVDNTFASPYLQQPL------A-LGADVVVHST  205 (388)
T ss_pred             HHHhcCc------CCeEEEEECCCCCcceecCHHHHHHHHHHcCCEEEEECCCCccccCCch------h-hCCcEEEecC
Confidence            9998854      5889999999999999999999999999999999999999876542211      1 1479999999


Q ss_pred             ccccCCCCc--eEEEEEeccch
Q psy14299        163 HKMLGAPLQ--CSILLIKEKGL  182 (448)
Q Consensus       163 hK~l~~P~g--~G~l~vr~~~~  182 (448)
                      +|++++|.+  .|+++++++.+
T Consensus       206 sK~l~g~~~~~gG~vv~~~~~l  227 (388)
T PRK07811        206 TKYIGGHSDVVGGALVTNDEEL  227 (388)
T ss_pred             ceeecCCCCcEEEEEEECCHHH
Confidence            999998875  57777766544

>PRK03158 histidinol-phosphate aminotransferase; Provisional

Probab=99.68  E-value=1.4e-14  Score=146.30  Aligned_cols=151  Identities=13%  Similarity=0.035  Sum_probs=110.7

Q ss_pred             cEEEeCcHHHHHHHHHHHHHHhcCCcccccCCCCCCCeEEEecCCCchHHHHHHHHhCCCCCcEEEEecCCCCCcCHHHH
Q psy14299          4 KPFLLPGGSISNMYSICLARYRLDPDTKRKGLSHLPPLCMFTSEDSHYSMLKAAHWLGIGMDNVIRVKTNERGQMICSFL   83 (448)
Q Consensus         4 ~g~~t~ggT~an~~al~~a~~~~~~~~~~~G~~~~~~~~Vl~~~~~H~s~~~~~~~~g~~~~~v~~v~~~~~g~id~e~L   83 (448)
                      ..++|+|+++++..++.+..+              +++.|+++...+..+...+...|.   ++..+|.+ ++.+|++++
T Consensus        83 ~i~~t~G~~~~l~~~~~~~~~--------------~gd~v~~~~p~y~~~~~~~~~~g~---~~~~~~~~-~~~~d~~~l  144 (359)
T PRK03158         83 QLLFGAGLDEVIQMISRALLN--------------PGTNTVMAEPTFSQYRHNAIIEGA---EVREVPLK-DGGHDLEAM  144 (359)
T ss_pred             HEEECCCHHHHHHHHHHHHhC--------------CCCEEEEcCCCHHHHHHHHHHcCC---eEEEEecC-CCCcCHHHH
Confidence            468899999997666555433              566788888888888888888888   78899987 678999999


Q ss_pred             HHHHHHhhhcCCCcEEEEEeccCCccccccCHHHHHHHHHH--cCCEEEEeccccccccccc--chhhhhcCCCCccEEE
Q psy14299         84 EQTIQTSLAEKKIPLFVNATAGTTVLGAFDPLDEIATVCEK--YDLWMHVDACWGGSLIFSE--KYSFVLKGINRANSVS  159 (448)
Q Consensus        84 e~~l~~~~~~~~~~~lVv~~~~~t~tG~~~~l~~I~~ia~~--~g~~l~VD~A~~~~~~~~~--~~~~~~~~~~~aD~~~  159 (448)
                      ++.+++      +++++++++++|+||.+.|.++|.++++.  +|+++++|++|........  ..-...... .-.+++
T Consensus       145 ~~~~~~------~~~~v~i~~p~NPtG~~~~~~~l~~~~~~~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~-~~vi~~  217 (359)
T PRK03158        145 LKAIDE------QTKIVWICNPNNPTGTYVNHEELLSFLESVPSHVLVVLDEAYYEYVTAEDYPDTLPLLEKY-ENLIVL  217 (359)
T ss_pred             HHhcCC------CCCEEEEeCCCCCCCCCCCHHHHHHHHHhCCCCcEEEEECchHhhcCCcccccHHHHHHhc-CCEEEE
Confidence            887743      47788889999999999999999999987  5999999999875443111  000011111 124666


Q ss_pred             ECCccccCCC-CceEEEEEec
Q psy14299        160 WNPHKMLGAP-LQCSILLIKE  179 (448)
Q Consensus       160 ~s~hK~l~~P-~g~G~l~vr~  179 (448)
                      .++.|.++.| .-+|+++..+
T Consensus       218 ~S~SK~~g~~GlRiG~~v~~~  238 (359)
T PRK03158        218 RTFSKAYGLAALRVGYGIASE  238 (359)
T ss_pred             EechHhhcCcchhhehhcCCH
Confidence            7899988755 2347766533

>PRK08133 O-succinylhomoserine sulfhydrylase; Validated

Probab=99.68  E-value=1.9e-14  Score=147.06  Aligned_cols=143  Identities=11%  Similarity=0.049  Sum_probs=109.7

Q ss_pred             cEEEeCcHHHHHHHHHHHHHHhcCCcccccCCCCCCCeEEEecCCCchHHHH----HHHHhCCCCCcEEEEecCCCCCcC
Q psy14299          4 KPFLLPGGSISNMYSICLARYRLDPDTKRKGLSHLPPLCMFTSEDSHYSMLK----AAHWLGIGMDNVIRVKTNERGQMI   79 (448)
Q Consensus         4 ~g~~t~ggT~an~~al~~a~~~~~~~~~~~G~~~~~~~~Vl~~~~~H~s~~~----~~~~~g~~~~~v~~v~~~~~g~id   79 (448)
                      ..++|+||++|+..++.+...              +++.|+++...|.+...    .+...|+   +++.++.+     |
T Consensus        78 ~~v~~ssG~~Ai~~al~al~~--------------~Gd~Vi~~~~~y~~t~~~~~~~~~~~G~---~v~~vd~~-----d  135 (390)
T PRK08133         78 ACVATASGMAAILAVVMALLQ--------------AGDHVVSSRSLFGSTVSLFEKIFARFGI---ETTFVDLT-----D  135 (390)
T ss_pred             cEEEECCHHHHHHHHHHHHhC--------------CCCEEEEccCcchhHHHHHHHHHHHcCc---EEEEECCC-----C
Confidence            468999999999888776543              56778889888876543    3445676   68888765     8


Q ss_pred             HHHHHHHHHHhhhcCCCcEEEEEeccCCccccccCHHHHHHHHHHcCCEEEEecccccccccccchhhhhcCCCCccEEE
Q psy14299         80 CSFLEQTIQTSLAEKKIPLFVNATAGTTVLGAFDPLDEIATVCEKYDLWMHVDACWGGSLIFSEKYSFVLKGINRANSVS  159 (448)
Q Consensus        80 ~e~Le~~l~~~~~~~~~~~lVv~~~~~t~tG~~~~l~~I~~ia~~~g~~l~VD~A~~~~~~~~~~~~~~~~~~~~aD~~~  159 (448)
                      ++++++++++      ++++|++++++|++|.+.|+++|.++||+||+++++|++++.+....+.      . .++|+++
T Consensus       136 ~~~l~~~i~~------~tklV~ie~p~NptG~v~dl~~I~~la~~~gi~livD~t~~~~~~~~pl------~-~g~Divv  202 (390)
T PRK08133        136 LDAWRAAVRP------NTKLFFLETPSNPLTELADIAALAEIAHAAGALLVVDNCFCTPALQQPL------K-LGADVVI  202 (390)
T ss_pred             HHHHHHhcCc------CCeEEEEECCCCCCCCcCCHHHHHHHHHHcCCEEEEECCCcccccCCch------h-hCCcEEE
Confidence            8999988854      5889999999999999999999999999999999999998765442211      0 1479999


Q ss_pred             ECCccccCCCCc-eEEEEEeccc
Q psy14299        160 WNPHKMLGAPLQ-CSILLIKEKG  181 (448)
Q Consensus       160 ~s~hK~l~~P~g-~G~l~vr~~~  181 (448)
                      .|+||+++++.. .|.+++.+++
T Consensus       203 ~S~sK~~~g~g~~~GG~vv~~~~  225 (390)
T PRK08133        203 HSATKYLDGQGRVLGGAVVGSKE  225 (390)
T ss_pred             eecceeecCCcceEeEEEEcCHH
Confidence            999999987753 3344443433

>PRK10534 L-threonine aldolase; Provisional

Probab=99.68  E-value=1.7e-15  Score=151.36  Aligned_cols=157  Identities=16%  Similarity=0.161  Sum_probs=102.1

Q ss_pred             EEEeCcHHHHHHHHHHHHHHhcCCcccccCCCCCCCeEEEecCCCchHHHHH--HHHhC-CCCCcEEEEecCCCCCcCHH
Q psy14299          5 PFLLPGGSISNMYSICLARYRLDPDTKRKGLSHLPPLCMFTSEDSHYSMLKA--AHWLG-IGMDNVIRVKTNERGQMICS   81 (448)
Q Consensus         5 g~~t~ggT~an~~al~~a~~~~~~~~~~~G~~~~~~~~Vl~~~~~H~s~~~~--~~~~g-~~~~~v~~v~~~~~g~id~e   81 (448)
                      .++++||++++++++.+...              +++.|+++...|.+..+.  +...+ .   .++.++.++++.+|++
T Consensus        52 ~~v~~~g~~a~~~~l~~~~~--------------~gd~vi~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~d~~  114 (333)
T PRK10534         52 ALFLPTGTQANLVALLSHCE--------------RGEEYIVGQAAHNYLYEAGGAAVLGSI---QPQPIDAAADGTLPLD  114 (333)
T ss_pred             EEEeCchHHHHHHHHHHhcC--------------CCCeeEEechhhhhHhcCCchHHhcCc---eEEeecCCCCCCCCHH
Confidence            47999999999888876533              556677887788654432  34443 3   5667777778999999


Q ss_pred             HHHHHHHHhhhcCCCcEEEEEeccCCccccccCHHH---HHHHHHHcCCEEEEecccccccccc-cchhhhhcCCCCccE
Q psy14299         82 FLEQTIQTSLAEKKIPLFVNATAGTTVLGAFDPLDE---IATVCEKYDLWMHVDACWGGSLIFS-EKYSFVLKGINRANS  157 (448)
Q Consensus        82 ~Le~~l~~~~~~~~~~~lVv~~~~~t~tG~~~~l~~---I~~ia~~~g~~l~VD~A~~~~~~~~-~~~~~~~~~~~~aD~  157 (448)
                      +|++++.+......++++|++++++  +|.+.|.++   |.++|++||++++||+||..+.... +.....+.  ...|.
T Consensus       115 ~l~~~i~~~~~~~~~~~lv~l~np~--~G~v~~~~~l~~i~~~~~~~~~~lvvDEA~~~~~~~~~~~~~~~~~--~~~~~  190 (333)
T PRK10534        115 KVAAKIKPDDIHFARTRLLSLENTH--NGKVLPREYLKQAWEFTRERNLALHVDGARIFNAVVAYGCELKEIT--QYCDS  190 (333)
T ss_pred             HHHHhhcccCcCcccceEEEEecCC--CCeecCHHHHHHHHHHHHHcCCeEEeeHHHHHHHHHHcCCCHHHHH--hcCCE
Confidence            9999885421111146788887544  599877655   5678899999999999876332110 11001111  12466


Q ss_pred             EEECCccccCCCCceEEEEEeccchhh
Q psy14299        158 VSWNPHKMLGAPLQCSILLIKEKGLLH  184 (448)
Q Consensus       158 ~~~s~hK~l~~P~g~G~l~vr~~~~~~  184 (448)
                      ++++++|.++.+  .|.+.+.++++..
T Consensus       191 ~~~s~SK~~~~~--~G~~~~~~~~~i~  215 (333)
T PRK10534        191 FTICLSKGLGTP--VGSLLVGNRDYIK  215 (333)
T ss_pred             EEEEeEcCCCCc--ccceEEcCHHHHH
Confidence            777899988876  5644444555443

>PRK09276 LL-diaminopimelate aminotransferase; Provisional

Probab=99.68  E-value=1.2e-14  Score=148.19  Aligned_cols=149  Identities=11%  Similarity=-0.008  Sum_probs=109.4

Q ss_pred             EEEeCcHHHHHHHHHHHHHHhcCCcccccCCCCCCCeEEEecCCCchHHHHHHHHhCCCCCcEEEEecCC--CCCcCHHH
Q psy14299          5 PFLLPGGSISNMYSICLARYRLDPDTKRKGLSHLPPLCMFTSEDSHYSMLKAAHWLGIGMDNVIRVKTNE--RGQMICSF   82 (448)
Q Consensus         5 g~~t~ggT~an~~al~~a~~~~~~~~~~~G~~~~~~~~Vl~~~~~H~s~~~~~~~~g~~~~~v~~v~~~~--~g~id~e~   82 (448)
                      .++|+|+++++..++.....              +++.|+++...+..+...++..|.   +++.+|.++  ++.+|+++
T Consensus        96 ii~t~G~~~~i~~~~~~~~~--------------~gd~Vl~~~P~y~~~~~~~~~~g~---~~~~v~~~~~~g~~~d~~~  158 (385)
T PRK09276         96 VISLIGSKEGIAHIPLAFVN--------------PGDVVLVPDPGYPVYKIGTIFAGG---EPYFMPLKEENGFLPDLDA  158 (385)
T ss_pred             EEEccCcHHHHHHHHHHhCC--------------CCCEEEEcCCCCcChHHHHHHcCC---EEEEEecCCCCCCcCCHHH
Confidence            67789999998777665543              567788999999888888998898   788888864  35689999


Q ss_pred             HHHHHHHhhhcCCCcEEEEEeccCCccccccC---HHHHHHHHHHcCCEEEEecccccccccccchhh--hhcCCCCccE
Q psy14299         83 LEQTIQTSLAEKKIPLFVNATAGTTVLGAFDP---LDEIATVCEKYDLWMHVDACWGGSLIFSEKYSF--VLKGINRANS  157 (448)
Q Consensus        83 Le~~l~~~~~~~~~~~lVv~~~~~t~tG~~~~---l~~I~~ia~~~g~~l~VD~A~~~~~~~~~~~~~--~~~~~~~aD~  157 (448)
                      +++.+.+      ++++|++++++|+||.+.+   +++|+++|++||+++++|.+|+...........  ...+.....+
T Consensus       159 l~~~~~~------~~~~v~l~~p~NPtG~~~~~~~~~~l~~~~~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~~~i  232 (385)
T PRK09276        159 IPEDVAK------KAKLMFINYPNNPTGAVADLEFFEEVVDFAKKYDIIVCHDAAYSEIAYDGYKPPSFLEVPGAKDVGI  232 (385)
T ss_pred             HHHhccc------cceEEEEeCCCCCCCCCCCHHHHHHHHHHHHHCCcEEEEecchhheecCCCCCCChhccCCCcCCEE
Confidence            9887753      5789999999999999877   588899999999999999998854331100000  0111112236


Q ss_pred             EEECCccccCCCCc--eEEEEE
Q psy14299        158 VSWNPHKMLGAPLQ--CSILLI  177 (448)
Q Consensus       158 ~~~s~hK~l~~P~g--~G~l~v  177 (448)
                      +..++.|.++.| |  +|+++.
T Consensus       233 ~~~S~SK~~g~~-GlRiG~~i~  253 (385)
T PRK09276        233 EFHSLSKTYNMT-GWRIGFAVG  253 (385)
T ss_pred             EEecchhhcCCc-chhheeeeC
Confidence            667888988644 4  677665

>PLN02656 tyrosine transaminase

Probab=99.68  E-value=2.2e-14  Score=147.71  Aligned_cols=151  Identities=13%  Similarity=0.071  Sum_probs=110.7

Q ss_pred             cEEEeCcHHHHHHHHHHHHHHhcCCcccccCCCCCCCeEEEecCCCchHHHHHHHHhCCCCCcEEEEecCC--CCCcCHH
Q psy14299          4 KPFLLPGGSISNMYSICLARYRLDPDTKRKGLSHLPPLCMFTSEDSHYSMLKAAHWLGIGMDNVIRVKTNE--RGQMICS   81 (448)
Q Consensus         4 ~g~~t~ggT~an~~al~~a~~~~~~~~~~~G~~~~~~~~Vl~~~~~H~s~~~~~~~~g~~~~~v~~v~~~~--~g~id~e   81 (448)
                      ..++|+|+|+++.+++.+...              +++.|++++..|..+...++..|+   ++..++.++  ++.+|++
T Consensus        98 ~i~~t~G~~~al~~~~~~l~~--------------~gd~Vlv~~p~y~~~~~~~~~~g~---~~~~i~~~~~~~~~~d~~  160 (409)
T PLN02656         98 DVFITSGCTQAIDVALSMLAR--------------PGANILLPRPGFPIYELCAAFRHL---EVRYVDLLPEKGWEVDLD  160 (409)
T ss_pred             cEEEeCChHHHHHHHHHHHhC--------------CCCeEEEeCCCCCcHHHHHHHcCC---EEEEEeCCCcCCCCCCHH
Confidence            578999999998877766543              567789999999888888888888   788888753  4689999


Q ss_pred             HHHHHHHHhhhcCCCcEEEEEeccCCccccc---cCHHHHHHHHHHcCCEEEEecccccccccccchhh--hhcCCCCcc
Q psy14299         82 FLEQTIQTSLAEKKIPLFVNATAGTTVLGAF---DPLDEIATVCEKYDLWMHVDACWGGSLIFSEKYSF--VLKGINRAN  156 (448)
Q Consensus        82 ~Le~~l~~~~~~~~~~~lVv~~~~~t~tG~~---~~l~~I~~ia~~~g~~l~VD~A~~~~~~~~~~~~~--~~~~~~~aD  156 (448)
                      ++++.+++      ++++|++++++|+||.+   .++++|+++|++||+++++|++|+...+.......  .+.... -=
T Consensus       161 ~l~~~~~~------~~~~v~l~~P~NPtG~~~s~~~~~~i~~~a~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~-~v  233 (409)
T PLN02656        161 AVEALADQ------NTVALVIINPGNPCGNVYSYQHLKKIAETAEKLKILVIADEVYGHLAFGSNPFVPMGVFGSIV-PV  233 (409)
T ss_pred             HHHHHhcc------CceEEEEECCCCCCCCCCCHHHHHHHHHHHHHcCCEEEEehhhhhcccCCCCcccHHHhcccC-cE
Confidence            99988754      47889999999999988   56899999999999999999998854432111000  011100 11


Q ss_pred             EEEECCccccCCC-CceEEEEEe
Q psy14299        157 SVSWNPHKMLGAP-LQCSILLIK  178 (448)
Q Consensus       157 ~~~~s~hK~l~~P-~g~G~l~vr  178 (448)
                      +++.|+.|.++.| .-+|+++..
T Consensus       234 i~~~SfSK~f~~pGlRiG~~i~~  256 (409)
T PLN02656        234 LTLGSLSKRWIVPGWRLGWFVTT  256 (409)
T ss_pred             EEEcccchhccCcceeEEEEEEe
Confidence            4556889986555 456666653

>PRK15481 transcriptional regulatory protein PtsJ; Provisional

Probab=99.67  E-value=2.2e-14  Score=148.66  Aligned_cols=148  Identities=15%  Similarity=0.140  Sum_probs=110.2

Q ss_pred             cEEEeCcHHHHHHHHHHHHHHhcCCcccccCCCCCCCeEEEecCCCchHHHHHHHHhCCCCCcEEEEecCCCCCcCHHHH
Q psy14299          4 KPFLLPGGSISNMYSICLARYRLDPDTKRKGLSHLPPLCMFTSEDSHYSMLKAAHWLGIGMDNVIRVKTNERGQMICSFL   83 (448)
Q Consensus         4 ~g~~t~ggT~an~~al~~a~~~~~~~~~~~G~~~~~~~~Vl~~~~~H~s~~~~~~~~g~~~~~v~~v~~~~~g~id~e~L   83 (448)
                      ..++|+|+++++.+++.+..+              +++.|+++...+..+...++..|.   +++.+|.++++ +|+++|
T Consensus       143 ~Iiit~G~~~al~~~~~~l~~--------------pgd~Vlv~~P~y~~~~~~~~~~g~---~~~~v~~~~~g-~~~~~l  204 (431)
T PRK15481        143 EIDLTSGAIDAIERLLCAHLL--------------PGDSVAVEDPCFLSSINMLRYAGF---SASPVSVDAEG-MQPEKL  204 (431)
T ss_pred             eEEEecCcHHHHHHHHHHhCC--------------CCCEEEEeCCCcHHHHHHHHHcCC---eEEeeccCCCC-CCHHHH
Confidence            578999999998888776544              667899999999999999999999   78999987665 899999


Q ss_pred             HHHHHHhhhcCCCcEEEEEe-ccCCccccccCHH---HHHHHHHHc-CCEEEEecccccccccccchhhhhcCCCCccEE
Q psy14299         84 EQTIQTSLAEKKIPLFVNAT-AGTTVLGAFDPLD---EIATVCEKY-DLWMHVDACWGGSLIFSEKYSFVLKGINRANSV  158 (448)
Q Consensus        84 e~~l~~~~~~~~~~~lVv~~-~~~t~tG~~~~l~---~I~~ia~~~-g~~l~VD~A~~~~~~~~~~~~~~~~~~~~aD~~  158 (448)
                      ++++++      ++++++++ .++|+||...+.+   +|.++|++| ++++++|.+|+-.... + ....+.....--++
T Consensus       205 ~~~~~~------~~k~i~~~p~p~NPTG~~~s~~~~~~l~~la~~~~~~~ii~De~Y~~~~~~-~-~~~~~~~~~~~vi~  276 (431)
T PRK15481        205 ERALAQ------GARAVILTPRAHNPTGCSLSARRAAALRNLLARYPQVLVIIDDHFALLSSS-P-YHSVIPQTTQRWAL  276 (431)
T ss_pred             HHHHhc------CCCEEEECCCCCCCCCccCCHHHHHHHHHHHHhcCCceEEecCchhhhccC-C-CCCCCcCCCCCEEE
Confidence            998854      36777776 8999999998876   899999999 9999999998754321 1 00101111111266


Q ss_pred             EECCccccCCCCceEEEEE
Q psy14299        159 SWNPHKMLGAPLQCSILLI  177 (448)
Q Consensus       159 ~~s~hK~l~~P~g~G~l~v  177 (448)
                      +.|+.|.++.-.-+|+++.
T Consensus       277 ~~SfSK~~~~GlRiG~~i~  295 (431)
T PRK15481        277 IRSVSKALGPDLRLAFVAS  295 (431)
T ss_pred             EeeeccccCCCceeEEEeC
Confidence            6788999882234555444

>PRK05613 O-acetylhomoserine aminocarboxypropyltransferase; Validated

Probab=99.67  E-value=2.5e-14  Score=147.68  Aligned_cols=142  Identities=14%  Similarity=0.021  Sum_probs=109.1

Q ss_pred             cEEEeCcHHHHHHHHHHHHHHhcCCcccccCCCCCCCeEEEecCCCchHHH----HHHHHhCCCCCcEEEEecCCCCCcC
Q psy14299          4 KPFLLPGGSISNMYSICLARYRLDPDTKRKGLSHLPPLCMFTSEDSHYSML----KAAHWLGIGMDNVIRVKTNERGQMI   79 (448)
Q Consensus         4 ~g~~t~ggT~an~~al~~a~~~~~~~~~~~G~~~~~~~~Vl~~~~~H~s~~----~~~~~~g~~~~~v~~v~~~~~g~id   79 (448)
                      ..+++++|+.|+..++.....              +++.|+++...|.+..    +.+...|+   ++..++ ++   .|
T Consensus        86 ~~v~fsSG~~Ai~~al~~ll~--------------~Gd~VI~~~~~y~~t~~~~~~~l~~~Gi---~v~~vd-~~---~d  144 (437)
T PRK05613         86 HAVAFASGQAAETAAILNLAG--------------AGDHIVTSPRLYGGTETLFLVTLNRLGI---EVTFVE-NP---DD  144 (437)
T ss_pred             eEEEeCCHHHHHHHHHHHhcC--------------CCCEEEECCCccHHHHHHHHHHHHhcCe---EEEEEC-CC---CC
Confidence            467888888888776654422              6778999999999874    33355566   677776 22   28


Q ss_pred             HHHHHHHHHHhhhcCCCcEEEEEeccCCccccccCHHHHHHHHHHcCCEEEEecccccccccccchhhhhcCCCCccEEE
Q psy14299         80 CSFLEQTIQTSLAEKKIPLFVNATAGTTVLGAFDPLDEIATVCEKYDLWMHVDACWGGSLIFSEKYSFVLKGINRANSVS  159 (448)
Q Consensus        80 ~e~Le~~l~~~~~~~~~~~lVv~~~~~t~tG~~~~l~~I~~ia~~~g~~l~VD~A~~~~~~~~~~~~~~~~~~~~aD~~~  159 (448)
                      ++++++++++      ++++|++.+.+|++|.+.|+++|+++||++|+.++||++++.+....+ ..     + ++|+++
T Consensus       145 ~e~l~~~l~~------~tk~V~~e~~~Np~~~v~di~~I~~la~~~gi~livD~t~a~g~~~~p-~~-----~-GaDivv  211 (437)
T PRK05613        145 PESWQAAVQP------NTKAFFGETFANPQADVLDIPAVAEVAHRNQVPLIVDNTIATAALVRP-LE-----L-GADVVV  211 (437)
T ss_pred             HHHHHHhCCc------cCeEEEEECCCCCCCcccCHHHHHHHHHHcCCeEEEECCCccccccCh-HH-----h-CCCEEE
Confidence            8999999865      478888999999999999999999999999999999999987765321 11     1 479999


Q ss_pred             ECCccccCCCC-ceEEEEEec
Q psy14299        160 WNPHKMLGAPL-QCSILLIKE  179 (448)
Q Consensus       160 ~s~hK~l~~P~-g~G~l~vr~  179 (448)
                      +|+||+++++. +.|.+++.+
T Consensus       212 ~S~~K~l~G~gd~~gG~vv~~  232 (437)
T PRK05613        212 ASLTKFYTGNGSGLGGVLIDG  232 (437)
T ss_pred             eeccceecCCCcceeEEEEec
Confidence            99999998774 456666644

>PRK07582 cystathionine gamma-lyase; Validated

Probab=99.67  E-value=1.3e-14  Score=147.11  Aligned_cols=142  Identities=17%  Similarity=0.093  Sum_probs=102.2

Q ss_pred             ccEEEeCcHHHHHHHHHHHHHHhcCCcccccCCCCCCCeEEEecCCCchHHHHHHH----HhCCCCCcEEEEecCCCCCc
Q psy14299          3 LKPFLLPGGSISNMYSICLARYRLDPDTKRKGLSHLPPLCMFTSEDSHYSMLKAAH----WLGIGMDNVIRVKTNERGQM   78 (448)
Q Consensus         3 ~~g~~t~ggT~an~~al~~a~~~~~~~~~~~G~~~~~~~~Vl~~~~~H~s~~~~~~----~~g~~~~~v~~v~~~~~g~i   78 (448)
                      ...+++++|+.++..++.+...              +++.|+++...|......+.    ..|+   +++.++.++++  
T Consensus        66 ~~~v~~~sG~~Ai~~~l~all~--------------~Gd~Vl~~~~~y~~~~~~~~~~l~~~G~---~v~~v~~~~~~--  126 (366)
T PRK07582         66 AEALVFPSGMAAITAVLRALLR--------------PGDTVVVPADGYYQVRALAREYLAPLGV---TVREAPTAGMA--  126 (366)
T ss_pred             CCEEEECCHHHHHHHHHHHhcC--------------CCCEEEEeCCCcHhHHHHHHHHHhcCeE---EEEEECCCChH--
Confidence            3578889999988777655432              66778888788877665443    3455   68888765321  


Q ss_pred             CHHHHHHHHHHhhhcCCCcEEEEEeccCCccccccCHHHHHHHHHHcCCEEEEecccccccccccchhhhhcCCCCccEE
Q psy14299         79 ICSFLEQTIQTSLAEKKIPLFVNATAGTTVLGAFDPLDEIATVCEKYDLWMHVDACWGGSLIFSEKYSFVLKGINRANSV  158 (448)
Q Consensus        79 d~e~Le~~l~~~~~~~~~~~lVv~~~~~t~tG~~~~l~~I~~ia~~~g~~l~VD~A~~~~~~~~~~~~~~~~~~~~aD~~  158 (448)
                           + .+.      .++++|++..++|++|.+.|+++|+++||++|++++||++|+......   +  +. + .+|++
T Consensus       127 -----~-~~~------~~t~lV~le~p~NPtg~v~di~~I~~~a~~~g~~lvVD~t~~~~~~~~---p--~~-~-g~Div  187 (366)
T PRK07582        127 -----E-AAL------AGADLVLAETPSNPGLDVCDLAALAAAAHAAGALLVVDNTTATPLGQR---P--LE-L-GADLV  187 (366)
T ss_pred             -----H-Hhc------cCceEEEEECCCCCCCCccCHHHHHHHHHHcCCEEEEECCCCCccccC---c--hh-c-CCcEE
Confidence                 1 111      247899999999999999999999999999999999999986322111   1  11 1 47999


Q ss_pred             EECCccccCCCCce--EEEEEeccch
Q psy14299        159 SWNPHKMLGAPLQC--SILLIKEKGL  182 (448)
Q Consensus       159 ~~s~hK~l~~P~g~--G~l~vr~~~~  182 (448)
                      +.|+|||+++|.|+  |+++.+++++
T Consensus       188 v~S~sK~l~G~~g~~~G~v~~~~~~l  213 (366)
T PRK07582        188 VASDTKALTGHSDLLLGYVAGRDPEL  213 (366)
T ss_pred             EecccccccCCCCeeEEEEEcCcHHH
Confidence            99999999999884  7666655443

>PTZ00433 tyrosine aminotransferase; Provisional

Probab=99.67  E-value=6e-14  Score=144.57  Aligned_cols=150  Identities=12%  Similarity=0.102  Sum_probs=111.6

Q ss_pred             cEEEeCcHHHHHHHHHHHHHHhcCCcccccCCCCCCCeEEEecCCCchHHHHHHHHhCCCCCcEEEEecCC--CCCcCHH
Q psy14299          4 KPFLLPGGSISNMYSICLARYRLDPDTKRKGLSHLPPLCMFTSEDSHYSMLKAAHWLGIGMDNVIRVKTNE--RGQMICS   81 (448)
Q Consensus         4 ~g~~t~ggT~an~~al~~a~~~~~~~~~~~G~~~~~~~~Vl~~~~~H~s~~~~~~~~g~~~~~v~~v~~~~--~g~id~e   81 (448)
                      ..++|+|+++++.+++.+...              +++.|+++..+|..+...++..|+   ++..++.++  ++.+|++
T Consensus       106 ~i~it~G~~~al~~~~~~~~~--------------~gd~vlv~~P~y~~~~~~~~~~g~---~~~~i~~~~~~~~~~d~~  168 (412)
T PTZ00433        106 NVVLCSGVSHAILMALTALCD--------------EGDNILVPAPGFPHYETVCKAYGI---EMRFYNCRPEKDWEADLD  168 (412)
T ss_pred             hEEEeCChHHHHHHHHHHhcC--------------CCCEEEEccCCcccHHHHHHHcCC---EEEEEecCccccCcCCHH
Confidence            478999999998888776543              567788999999999999999998   788888753  5689999


Q ss_pred             HHHHHHHHhhhcCCCcEEEEEeccCCccccccC---HHHHHHHHHHcCCEEEEecccccccccccchhhhhcCCC-Ccc-
Q psy14299         82 FLEQTIQTSLAEKKIPLFVNATAGTTVLGAFDP---LDEIATVCEKYDLWMHVDACWGGSLIFSEKYSFVLKGIN-RAN-  156 (448)
Q Consensus        82 ~Le~~l~~~~~~~~~~~lVv~~~~~t~tG~~~~---l~~I~~ia~~~g~~l~VD~A~~~~~~~~~~~~~~~~~~~-~aD-  156 (448)
                      +|++.+.+      ++++|++++++|+||...+   +++|.++|++||+++++|++|............ +..+. ..+ 
T Consensus       169 ~l~~~~~~------~~~~i~~~~p~NPtG~~~s~~~~~~l~~~a~~~~~~ii~De~y~~~~~~~~~~~~-~~~~~~~~~~  241 (412)
T PTZ00433        169 EIRRLVDD------RTKALIMTNPSNPCGSNFSRKHVEDIIRLCEELRLPLISDEIYAGMVFNGATFTS-VADFDTTVPR  241 (412)
T ss_pred             HHHHHhcc------CceEEEEeCCCCCCCcccCHHHHHHHHHHHHHcCCeEEEeccccccccCCCCccc-hhhccCCCce
Confidence            99988754      4788999999999997654   788899999999999999998754331111000 11111 111 


Q ss_pred             EEEECCccccCCC-CceEEEEE
Q psy14299        157 SVSWNPHKMLGAP-LQCSILLI  177 (448)
Q Consensus       157 ~~~~s~hK~l~~P-~g~G~l~v  177 (448)
                      +++.|+.|.++.| .-+|++++
T Consensus       242 i~~~SfSK~~~~pGlRlG~~i~  263 (412)
T PTZ00433        242 VILGGTAKNLVVPGWRLGWLLL  263 (412)
T ss_pred             EEEccchhhcCCCCeeEEEEEE
Confidence            4566889988655 55777765

>PRK09105 putative aminotransferase; Provisional

Probab=99.67  E-value=1.4e-14  Score=147.10  Aligned_cols=153  Identities=14%  Similarity=0.100  Sum_probs=110.0

Q ss_pred             cEEEeCcHHHHHHHHHHHHHHhcCCcccccCCCCCCCeEEEecCCCchHHHHHHHHhCCCCCcEEEEecCCCCCcCHHHH
Q psy14299          4 KPFLLPGGSISNMYSICLARYRLDPDTKRKGLSHLPPLCMFTSEDSHYSMLKAAHWLGIGMDNVIRVKTNERGQMICSFL   83 (448)
Q Consensus         4 ~g~~t~ggT~an~~al~~a~~~~~~~~~~~G~~~~~~~~Vl~~~~~H~s~~~~~~~~g~~~~~v~~v~~~~~g~id~e~L   83 (448)
                      ..++|+|+++++..++.+...              +++.|++++.+|..+...++..|.   +++.+|.++++.+|++.+
T Consensus        97 ~I~it~Gs~~ai~~~~~~l~~--------------~gd~Vli~~P~y~~~~~~~~~~g~---~~~~v~~~~~~~~d~~~l  159 (370)
T PRK09105         97 HVMAYAGSSEPLNYAVLAFTS--------------PTAGLVTADPTYEAGWRAADAQGA---PVAKVPLRADGAHDVKAM  159 (370)
T ss_pred             hEEEcCChHHHHHHHHHHHcC--------------CCCEEEEeCCChHHHHHHHHHcCC---eEEEecCCCCCCCCHHHH
Confidence            467899999998888766543              566788899999999999999998   788999888888999999


Q ss_pred             HHHHHHhhhcCCCcEEEEEeccCCccccccCHHHHHHHHHH--cCCEEEEecccccccccccchhhhhcCCCCccEEE-E
Q psy14299         84 EQTIQTSLAEKKIPLFVNATAGTTVLGAFDPLDEIATVCEK--YDLWMHVDACWGGSLIFSEKYSFVLKGINRANSVS-W  160 (448)
Q Consensus        84 e~~l~~~~~~~~~~~lVv~~~~~t~tG~~~~l~~I~~ia~~--~g~~l~VD~A~~~~~~~~~~~~~~~~~~~~aD~~~-~  160 (448)
                      ++..       .+++++++++++|+||.+.+.++|.++++.  +++++++|++|.-... .+... .+... ..++++ .
T Consensus       160 ~~~~-------~~~~~v~l~nP~NPTG~~~~~~~l~~l~~~~~~~~~lIvDEaY~~f~~-~~s~~-~~~~~-~~~vi~~~  229 (370)
T PRK09105        160 LAAD-------PNAGLIYICNPNNPTGTVTPRADIEWLLANKPAGSVLLVDEAYIHFSD-APSVV-DLVAQ-RKDLIVLR  229 (370)
T ss_pred             HhcC-------CCCCEEEEeCCCCCCCcCcCHHHHHHHHHhCCCCcEEEEECchHHhcc-CcchH-HHHhh-CCCEEEEe
Confidence            7652       246789999999999999999998888754  4899999999853211 11000 01111 234555 4


Q ss_pred             CCccccCCC-CceEEEEEeccchhh
Q psy14299        161 NPHKMLGAP-LQCSILLIKEKGLLH  184 (448)
Q Consensus       161 s~hK~l~~P-~g~G~l~vr~~~~~~  184 (448)
                      |+.|.++.| .-+|+++.. ++...
T Consensus       230 SfSK~~g~~GlRiG~~v~~-~~~i~  253 (370)
T PRK09105        230 TFSKLYGMAGMRLGLAAAR-PDLLA  253 (370)
T ss_pred             cccHhhcCCccceeeeecC-HHHHH
Confidence            777887644 237777663 34433

>cd01494 AAT_I Aspartate aminotransferase (AAT) superfamily (fold type I) of pyridoxal phosphate (PLP)-dependent enzymes

Probab=99.67  E-value=9.6e-16  Score=136.63  Aligned_cols=149  Identities=23%  Similarity=0.278  Sum_probs=117.0

Q ss_pred             cEEEeCcHHHHHHHHHHHHHHhcCCcccccCCCCCCCeEEEecCCCchHHH-HHHHHhCCCCCcEEEEecCCCCCcCHH-
Q psy14299          4 KPFLLPGGSISNMYSICLARYRLDPDTKRKGLSHLPPLCMFTSEDSHYSML-KAAHWLGIGMDNVIRVKTNERGQMICS-   81 (448)
Q Consensus         4 ~g~~t~ggT~an~~al~~a~~~~~~~~~~~G~~~~~~~~Vl~~~~~H~s~~-~~~~~~g~~~~~v~~v~~~~~g~id~e-   81 (448)
                      .+++++|||+++..++.+++.              ++..|++++..|.+.. ..+...|.   +++.++.+.++..+.+ 
T Consensus        19 ~~~~~~~~t~a~~~~~~~~~~--------------~~~~v~~~~~~~~~~~~~~~~~~g~---~~~~v~~~~~~~~~~~~   81 (170)
T cd01494          19 KAVFVPSGTGANEAALLALLG--------------PGDEVIVDANGHGSRYWVAAELAGA---KPVPVPVDDAGYGGLDV   81 (170)
T ss_pred             cEEEeCCcHHHHHHHHHHhCC--------------CCCEEEEeecccceehhhHHHhcCC---EEEEeccCCCCccchhh
Confidence            578999999999999887654              3456888889999888 77777787   7888888765543332 


Q ss_pred             -HHHHHHHHhhhcCCCcEEEEEeccCCccccccCHHHHHHHHHHcCCEEEEecccccccccccchhhhhcCCCCccEEEE
Q psy14299         82 -FLEQTIQTSLAEKKIPLFVNATAGTTVLGAFDPLDEIATVCEKYDLWMHVDACWGGSLIFSEKYSFVLKGINRANSVSW  160 (448)
Q Consensus        82 -~Le~~l~~~~~~~~~~~lVv~~~~~t~tG~~~~l~~I~~ia~~~g~~l~VD~A~~~~~~~~~~~~~~~~~~~~aD~~~~  160 (448)
                       .+++...     ..++.+++++++++++|...|+++|.++|+++|+++|+|++++.+........  .. ...+|+++.
T Consensus        82 ~~~~~~~~-----~~~~~~v~~~~~~~~~g~~~~~~~l~~~~~~~~~~li~D~a~~~~~~~~~~~~--~~-~~~~d~~~~  153 (170)
T cd01494          82 AILEELKA-----KPNVALIVITPNTTSGGVLVPLKEIRKIAKEYGILLLVDAASAGGASPAPGVL--IP-EGGADVVTF  153 (170)
T ss_pred             hhhhhccc-----cCceEEEEEecCcCCCCeEcCHHHHHHHHHHcCCEEEEecccccccccccccc--cc-cccCCEEEE
Confidence             4433322     24689999999999999999999999999999999999999998877542211  11 135899999


Q ss_pred             CCccccCCCCceEEEEEe
Q psy14299        161 NPHKMLGAPLQCSILLIK  178 (448)
Q Consensus       161 s~hK~l~~P~g~G~l~vr  178 (448)
                      |+||++++ +++|++++|
T Consensus       154 s~~K~~~~-~~~G~l~~~  170 (170)
T cd01494         154 SLHKNLGG-EGGGVVIVK  170 (170)
T ss_pred             EcccccCC-CceEEEEeC
Confidence            99999998 789998875

PLP combines with an alpha-amino acid to form a compound called a Schiff base or aldimine intermediate, which depending on the reaction, is the substrate in four kinds of reactions (1) transamination (movement of amino groups), (2) racemization (redistribution of enantiomers), (3) decarboxylation (removing COOH groups), and (4) various side-chain reactions depending on the enzyme involved. Pyridoxal phosphate (PLP) dependent enzymes were previously classified into alpha, beta and gamma classes, based on the chemical characteristics (carbon atom involved) of the reaction they catalyzed. The availability of several structures allowed a comprehensive analysis of the evolutionary classification of PLP dependent enzymes, and it was found that the functional classification did not always agree with the evolutionary history of these enzymes. Structure and sequence analysis

>TIGR01264 tyr_amTase_E tyrosine aminotransferase, eukaryotic

Probab=99.67  E-value=5.2e-14  Score=144.48  Aligned_cols=152  Identities=16%  Similarity=0.100  Sum_probs=110.2

Q ss_pred             cEEEeCcHHHHHHHHHHHHHHhcCCcccccCCCCCCCeEEEecCCCchHHHHHHHHhCCCCCcEEEEecCC--CCCcCHH
Q psy14299          4 KPFLLPGGSISNMYSICLARYRLDPDTKRKGLSHLPPLCMFTSEDSHYSMLKAAHWLGIGMDNVIRVKTNE--RGQMICS   81 (448)
Q Consensus         4 ~g~~t~ggT~an~~al~~a~~~~~~~~~~~G~~~~~~~~Vl~~~~~H~s~~~~~~~~g~~~~~v~~v~~~~--~g~id~e   81 (448)
                      ..++|+|+++++.+++.+...              +++.|+++...+..+...++..|.   ++..++.+.  ++.+|++
T Consensus        97 ~i~~t~G~~~al~~~~~~l~~--------------~gd~v~i~~P~y~~~~~~~~~~g~---~v~~~~~~~~~~~~~d~~  159 (401)
T TIGR01264        97 DVVLCSGCSHAIEMCIAALAN--------------AGQNILVPRPGFPLYETLAESMGI---EVKLYNLLPDKSWEIDLK  159 (401)
T ss_pred             HEEECcChHHHHHHHHHHhCC--------------CCCEEEEeCCCChhHHHHHHHcCC---EEEEeecCCccCCCCCHH
Confidence            367899999998887766543              456788888888888888898888   788887753  4689999


Q ss_pred             HHHHHHHHhhhcCCCcEEEEEeccCCccccccC---HHHHHHHHHHcCCEEEEecccccccccccchhhhhcCCCC-cc-
Q psy14299         82 FLEQTIQTSLAEKKIPLFVNATAGTTVLGAFDP---LDEIATVCEKYDLWMHVDACWGGSLIFSEKYSFVLKGINR-AN-  156 (448)
Q Consensus        82 ~Le~~l~~~~~~~~~~~lVv~~~~~t~tG~~~~---l~~I~~ia~~~g~~l~VD~A~~~~~~~~~~~~~~~~~~~~-aD-  156 (448)
                      .+++.+++      ++++|++++++|+||...+   +++|.++|+++|+++++|++|............ +..+.. .. 
T Consensus       160 ~l~~~~~~------~~~~v~~~~p~NPtG~~~~~~~~~~l~~~a~~~~~~ii~De~y~~~~~~~~~~~~-~~~~~~~~~v  232 (401)
T TIGR01264       160 QLESLIDE------KTAALIVNNPSNPCGSVFSRQHLEEILAVAERQCLPIIADEIYGDMVFSGATFEP-LASLSSTVPI  232 (401)
T ss_pred             HHHHHhcc------CceEEEEcCCCCCCCCCCCHHHHHHHHHHHHHCCCEEEEEhhhhhhccCCccccc-HHHcCCCCcE
Confidence            99988754      3678899999999998865   888999999999999999998854431111111 111111 11 


Q ss_pred             EEEECCccccCCC-CceEEEEEec
Q psy14299        157 SVSWNPHKMLGAP-LQCSILLIKE  179 (448)
Q Consensus       157 ~~~~s~hK~l~~P-~g~G~l~vr~  179 (448)
                      +++.|+.|.++.| .-+|++++.+
T Consensus       233 i~~~SfSK~~~~~GlRiG~iv~~~  256 (401)
T TIGR01264       233 LSCGGLAKRWLVPGWRLGWIIIHD  256 (401)
T ss_pred             EEEccCcccCCCccceEEEEEecC
Confidence            5667889975554 3477776643

This model describes tyrosine aminotransferase as found in animals and Trypanosoma cruzi. It is the first enzyme of a pathway of tyrosine degradation via homogentisate. Several plant enzyme designated as probable tyrosine aminotransferases are very closely related to an experimentally demonstrated nicotianamine aminotransferase, an enzyme in a siderophore (iron uptake chelator) biosynthesis pathway. These plant sequences are excluded from the model seed and score between the trusted an noise cutoffs.

>PRK08776 cystathionine gamma-synthase; Provisional

Probab=99.67  E-value=5.3e-14  Score=144.31  Aligned_cols=144  Identities=12%  Similarity=0.038  Sum_probs=107.5

Q ss_pred             cEEEeCcHHHHHHHHHHHHHHhcCCcccccCCCCCCCeEEEecCCCchHHH----HHHHHhCCCCCcEEEEecCCCCCcC
Q psy14299          4 KPFLLPGGSISNMYSICLARYRLDPDTKRKGLSHLPPLCMFTSEDSHYSML----KAAHWLGIGMDNVIRVKTNERGQMI   79 (448)
Q Consensus         4 ~g~~t~ggT~an~~al~~a~~~~~~~~~~~G~~~~~~~~Vl~~~~~H~s~~----~~~~~~g~~~~~v~~v~~~~~g~id   79 (448)
                      ..+++++|+.++.+++.+..+              +++.|+++...|....    ..++..|+   ++..++.     .|
T Consensus        77 ~~v~~~sG~~Ai~~~l~all~--------------pGD~Vvv~~p~Y~~t~~~~~~~~~~~g~---~v~~v~~-----~d  134 (405)
T PRK08776         77 GGVITATGMGAINLVLNALLQ--------------PGDTLVVPHDAYGGSWRLFNALAKKGHF---ALITADL-----TD  134 (405)
T ss_pred             ceEEEcCHHHHHHHHHHHHhC--------------CCCEEEEccCCchHHHHHHHHHHHhcCc---EEEEECC-----CC
Confidence            468889999888777665533              6677888877777633    33333344   5666654     38


Q ss_pred             HHHHHHHHHHhhhcCCCcEEEEEeccCCccccccCHHHHHHHHHHcCCEEEEecccccccccccchhhhhcCCCCccEEE
Q psy14299         80 CSFLEQTIQTSLAEKKIPLFVNATAGTTVLGAFDPLDEIATVCEKYDLWMHVDACWGGSLIFSEKYSFVLKGINRANSVS  159 (448)
Q Consensus        80 ~e~Le~~l~~~~~~~~~~~lVv~~~~~t~tG~~~~l~~I~~ia~~~g~~l~VD~A~~~~~~~~~~~~~~~~~~~~aD~~~  159 (448)
                      ++++++++++      ++++|++++++|++|.+.|+++|+++|+++|++++||++|..+....+ .    . . ++|+++
T Consensus       135 ~~~l~~~i~~------~tklV~l~~P~NPtG~v~dl~~I~~la~~~gi~vIvD~a~a~~~~~~p-l----~-~-gaDivv  201 (405)
T PRK08776        135 PRSLADALAQ------SPKLVLIETPSNPLLRITDLRFVIEAAHKVGALTVVDNTFLSPALQKP-L----E-F-GADLVL  201 (405)
T ss_pred             HHHHHHhcCc------CCeEEEEECCCCCCCccCCHHHHHHHHHHcCCEEEEECCCcccccCCc-c----c-c-cCCEEE
Confidence            8999988854      478999999999999999999999999999999999999986543211 1    1 1 479999


Q ss_pred             ECCccccCCCCc--eEEEEEeccch
Q psy14299        160 WNPHKMLGAPLQ--CSILLIKEKGL  182 (448)
Q Consensus       160 ~s~hK~l~~P~g--~G~l~vr~~~~  182 (448)
                      .|+||++++|.+  .|+++.+++++
T Consensus       202 ~S~tK~l~g~~~~~~G~vv~~~~~l  226 (405)
T PRK08776        202 HSTTKYINGHSDVVGGAVVARDAEL  226 (405)
T ss_pred             ecCceeecCCCCceEEEEEeCCHHH
Confidence            999999999876  46665655543

>PRK07683 aminotransferase A; Validated

Probab=99.66  E-value=5.1e-14  Score=143.91  Aligned_cols=151  Identities=12%  Similarity=0.048  Sum_probs=111.6

Q ss_pred             cEEEeCcHHHHHHHHHHHHHHhcCCcccccCCCCCCCeEEEecCCCchHHHHHHHHhCCCCCcEEEEecCC-CCCcCHHH
Q psy14299          4 KPFLLPGGSISNMYSICLARYRLDPDTKRKGLSHLPPLCMFTSEDSHYSMLKAAHWLGIGMDNVIRVKTNE-RGQMICSF   82 (448)
Q Consensus         4 ~g~~t~ggT~an~~al~~a~~~~~~~~~~~G~~~~~~~~Vl~~~~~H~s~~~~~~~~g~~~~~v~~v~~~~-~g~id~e~   82 (448)
                      ..++|+|+++++.+++.+...              +++.|+++...+..+...++..|.   +++.++.++ +..+|+++
T Consensus        91 ~I~~t~G~~~al~~~~~~l~~--------------~gd~Vl~~~p~y~~~~~~~~~~g~---~~~~~~~~~~~~~~~~~~  153 (387)
T PRK07683         91 EIIVTIGASEAIDIAFRTILE--------------PGTEVILPAPIYPGYEPIIRLCGA---KPVFIDTRSTGFRLTAEA  153 (387)
T ss_pred             cEEEeCChHHHHHHHHHHhCC--------------CCCEEEEcCCCccchHHHHHHcCC---EEEEeecCcccCCCCHHH
Confidence            579999999998877765433              566788898888888888888888   788888865 45778999


Q ss_pred             HHHHHHHhhhcCCCcEEEEEeccCCccccccC---HHHHHHHHHHcCCEEEEecccccccccccchhhhhc--CCCCccE
Q psy14299         83 LEQTIQTSLAEKKIPLFVNATAGTTVLGAFDP---LDEIATVCEKYDLWMHVDACWGGSLIFSEKYSFVLK--GINRANS  157 (448)
Q Consensus        83 Le~~l~~~~~~~~~~~lVv~~~~~t~tG~~~~---l~~I~~ia~~~g~~l~VD~A~~~~~~~~~~~~~~~~--~~~~aD~  157 (448)
                      +++.+.+      +++++++++++|+||...+   +++|+++|+++|+++++|++|......-+. .....  +...-.+
T Consensus       154 l~~~~~~------~~~~i~i~~p~NPtG~~~s~~~~~~l~~~~~~~~~~ii~De~y~~~~~~~~~-~~~~~~~~~~~~vi  226 (387)
T PRK07683        154 LENAITE------KTRCVVLPYPSNPTGVTLSKEELQDIADVLKDKNIFVLSDEIYSELVYEQPH-TSIAHFPEMREKTI  226 (387)
T ss_pred             HHHhcCc------CceEEEEeCCCCCCCcCCCHHHHHHHHHHHHHcCeEEEEecccccceeCCCc-CChhhccCCcCCeE
Confidence            9998754      4789999999999998755   888999999999999999998865432111 11111  1111246


Q ss_pred             EEECCccccCCC-CceEEEEEe
Q psy14299        158 VSWNPHKMLGAP-LQCSILLIK  178 (448)
Q Consensus       158 ~~~s~hK~l~~P-~g~G~l~vr  178 (448)
                      ++.++.|.++.| .-+|+++..
T Consensus       227 ~~~s~SK~~~~pGlRiG~i~~~  248 (387)
T PRK07683        227 VINGLSKSHSMTGWRIGFLFAP  248 (387)
T ss_pred             EEeeccccccCccceeEEEEcC
Confidence            678899999866 235666553

>PRK08248 O-acetylhomoserine aminocarboxypropyltransferase; Validated

Probab=99.66  E-value=3.5e-14  Score=146.60  Aligned_cols=142  Identities=15%  Similarity=0.125  Sum_probs=110.8

Q ss_pred             cEEEeCcHHHHHHHHHHHHHHhcCCcccccCCCCCCCeEEEecCCCchHHH----HHHHHhCCCCCcEEEEecCCCCCcC
Q psy14299          4 KPFLLPGGSISNMYSICLARYRLDPDTKRKGLSHLPPLCMFTSEDSHYSML----KAAHWLGIGMDNVIRVKTNERGQMI   79 (448)
Q Consensus         4 ~g~~t~ggT~an~~al~~a~~~~~~~~~~~G~~~~~~~~Vl~~~~~H~s~~----~~~~~~g~~~~~v~~v~~~~~g~id   79 (448)
                      .+++|++|+.++..++.....              +++.|+++...|....    ..++..|+   +++.++..     |
T Consensus        81 ~al~~~sG~~Ai~~al~~ll~--------------~GD~Vlv~~~~y~~t~~~~~~~~~~~Gv---~v~~vd~~-----d  138 (431)
T PRK08248         81 GALAVSSGQAAITYSILNIAS--------------AGDEIVSSSSLYGGTYNLFAHTLPKLGI---TVKFVDPS-----D  138 (431)
T ss_pred             cEEEECCHHHHHHHHHHHHhC--------------CCCEEEEccCchhhHHHHHHHHHHhCCE---EEEEECCC-----C
Confidence            578999999998888766543              5677888888776533    34455666   67788753     8


Q ss_pred             HHHHHHHHHHhhhcCCCcEEEEEeccCCccccccCHHHHHHHHHHcCCEEEEecccccccccccchhhhhcCCCCccEEE
Q psy14299         80 CSFLEQTIQTSLAEKKIPLFVNATAGTTVLGAFDPLDEIATVCEKYDLWMHVDACWGGSLIFSEKYSFVLKGINRANSVS  159 (448)
Q Consensus        80 ~e~Le~~l~~~~~~~~~~~lVv~~~~~t~tG~~~~l~~I~~ia~~~g~~l~VD~A~~~~~~~~~~~~~~~~~~~~aD~~~  159 (448)
                      ++++++++++      ++++|++++++|++|.+.|+++|+++||++|++++||++++.+....+     + . .++|+++
T Consensus       139 ~e~l~~ai~~------~tklV~l~sp~NPtG~v~di~~I~~la~~~gi~vIvD~t~a~~~~~~p-----l-~-~gaDivv  205 (431)
T PRK08248        139 PENFEAAITD------KTKALFAETIGNPKGDVLDIEAVAAIAHEHGIPLIVDNTFASPYLLRP-----I-E-HGADIVV  205 (431)
T ss_pred             HHHHHHhcCC------CCeEEEEECCCCCCCcccCHHHHHHHHHHcCCEEEEeCCCCccccCCh-----h-H-cCCCEEE
Confidence            9999998854      478999999999999999999999999999999999999885443221     1 1 1589999


Q ss_pred             ECCccccCCCCc-eEEEEEecc
Q psy14299        160 WNPHKMLGAPLQ-CSILLIKEK  180 (448)
Q Consensus       160 ~s~hK~l~~P~g-~G~l~vr~~  180 (448)
                      .|.||++++|.. +|.+++.+.
T Consensus       206 ~S~tK~lgg~g~~~Gg~v~~~~  227 (431)
T PRK08248        206 HSATKFIGGHGTSIGGVIVDSG  227 (431)
T ss_pred             EcCccccCCCCCceEEEEEeCC
Confidence            999999999863 677666443

>TIGR00461 gcvP glycine dehydrogenase (decarboxylating)

Probab=99.66  E-value=2.1e-14  Score=157.30  Aligned_cols=264  Identities=10%  Similarity=0.060  Sum_probs=176.6

Q ss_pred             eEEEecCCCchHHHHHHH----HhCCCCCcEEEEecCCCCCcCHHHHHHHHHHhhhcCCCcEEEEEeccCCccccccCHH
Q psy14299         41 LCMFTSEDSHYSMLKAAH----WLGIGMDNVIRVKTNERGQMICSFLEQTIQTSLAEKKIPLFVNATAGTTVLGAFDPLD  116 (448)
Q Consensus        41 ~~Vl~~~~~H~s~~~~~~----~~g~~~~~v~~v~~~~~g~id~e~Le~~l~~~~~~~~~~~lVv~~~~~t~tG~~~~l~  116 (448)
                      ..|++++..|+......+    ..|+   +++.+        |+++|++.+        .+..|+++.+++ .|.+.|++
T Consensus       154 ~~vlv~~~~hP~~~~v~~t~a~~~g~---~v~~~--------~~~~l~~~~--------~~~~v~~q~Pn~-~G~ied~~  213 (939)
T TIGR00461       154 NKFFVAKDLHPQTKSVLHTRAKPFGI---EVIVV--------DCSDIKKAV--------DVFGCLLQYPAT-DGSILDYK  213 (939)
T ss_pred             CEEEECCCCCcchHHHHHHHHHhcCc---EEEEE--------cHHHHhhcC--------CEEEEEEECCCC-CeEEecHH
Confidence            568999999998775554    4455   56665        345555544        245566666655 99999999


Q ss_pred             HHHHHHHHcCCEEEEecccccccccccchhhhhcCCCCccEEEECCccccC-----CCCceEEEEEeccchhhhhccCCc
Q psy14299        117 EIATVCEKYDLWMHVDACWGGSLIFSEKYSFVLKGINRANSVSWNPHKMLG-----APLQCSILLIKEKGLLHQANATAA  191 (448)
Q Consensus       117 ~I~~ia~~~g~~l~VD~A~~~~~~~~~~~~~~~~~~~~aD~~~~s~hK~l~-----~P~g~G~l~vr~~~~~~~~~~~~~  191 (448)
                      +|++++|++|++++++.-.-+.....+..     .+ ++|+++.+.++|+.     +|. .|++.++++ +.+.    .|
T Consensus       214 ~i~~~~h~~gal~~~~ad~~al~ll~~Pg-----e~-GaDi~vg~~q~fg~p~g~GGP~-aG~~a~~~~-l~r~----lP  281 (939)
T TIGR00461       214 QLIDALHSHKSLVSVAADLMALTLLTPPG-----HY-GADIVLGSSQRFGVPMGYGGPH-AAFFAVKDE-YNRK----MP  281 (939)
T ss_pred             HHHHHHHHcCCEEEEEechHHhCCcCCHH-----Hc-CCcEEeeCCCccCCCCCCCCCc-eeeeeecHh-hHhh----CC
Confidence            99999999999999965333333322211     11 58999777776543     565 888999775 2222    22


Q ss_pred             ccccccCcccccccCCCCCcccCCCCchhHHHHHHHHHhChHHHHHHHHHhhhhccCCCccchhhhhhhhhhhhhhhhhh
Q psy14299        192 TYLFQQDKFYDVSFDTGDKSVQCGRKVDAFKLWLMWKARGNLGFRHFVDNAVDCSRGSMTFSTLLCFDLQGLLHQANATA  271 (448)
Q Consensus       192 ~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~g~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  271 (448)
                      +-+-..+....            +++.-.+    +         .+.-++++++.++.|+||+             |++ 
T Consensus       282 grivG~s~D~~------------G~~~~~l----~---------LqtReqhIrRekAtSNICt-------------~qa-  322 (939)
T TIGR00461       282 GRIVGVSKDAL------------GNTALRL----A---------LQTREQHIRRDKATSNICT-------------AQV-  322 (939)
T ss_pred             CCceeEEecCC------------CCcccee----e---------cccccccccccccCcchhH-------------HHH-
Confidence            22211110000            1110000    0         0011356777888888888             222 


Q ss_pred             hhhhhccccccccccCCCCCccccccchhhHHHHHHHHHhcCccHHHHHHHHHHHHHHHHHHhhcCCCeEEeccCCceee
Q psy14299        272 ATYLFQQDKFYDVSFDTGDKSVQCGRKVDAFKLWLMWKARGNLGFRHFVDNAVDCSRYFLSQISQRPGFRLVIPEFQCTN  351 (448)
Q Consensus       272 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~~l~~~~~~~L~~~pg~~l~~~~~~~~~  351 (448)
                                                 ..+++....+.+.|.+|++++.++.+.++.++.+.|.+ +|++++ .++.+..
T Consensus       323 ---------------------------L~a~~a~~Y~~~~G~~GL~~iA~~~~~~a~~l~~~L~~-~G~~~~-~~~fF~~  373 (939)
T TIGR00461       323 ---------------------------LLANVASSYCVYHGPKGLKNIARRIHSLTSILANGLEN-DPHELI-NKTWFDT  373 (939)
T ss_pred             ---------------------------HHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHh-CCCccc-CCCccce
Confidence                                       22566677789999999999999999999999999999 599998 6666777


Q ss_pred             EEEEeeccCCCccccchhhhhhhhhhhHHHHHHHHhCCcEEEEeeecCCcccccEEEEEecCCCCCCHHHHHHHHHHHH
Q psy14299        352 ICFWFIPVSLRDKVEDETWWSTLSKVAPRIKEKLVLGGTLMIGYQPLQHRNLHNFFRLVTTCHPASSRQDMDYAIDQIE  430 (448)
Q Consensus       352 v~f~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~L~~~g~~~~~~~~~~g~~~~~~lRis~~~~~~~t~edid~l~~al~  430 (448)
                      +.+.+...                 ...++.+++.++|+. +..  . .   .+.+++|+  +.++|++||+.|++++.
T Consensus       374 ~~v~~~~~-----------------~~~~i~~~~~~~gi~-l~~--~-~---~~~i~~s~--~E~~t~~di~~l~~~~~  426 (939)
T TIGR00461       374 LTVKVGNG-----------------ISSELLKAAEEFNIN-LRA--V-D---TTTVGIAL--DETTTKADVENLLKVFD  426 (939)
T ss_pred             EEEEeCCC-----------------CHHHHHHHHHHCCCe-eee--c-C---CCEEEEEe--ecCCCHHHHHHHHHHhc
Confidence            77765100                 124789999999954 332  1 1   25899999  79999999999999995

This apparently ubiquitous enzyme is found in bacterial, mammalian and plant sources. The enzyme catalyzes the reaction: GLYCINE + LIPOYLPROTEIN = S-AMINOMETHYL-DIHYDROLIPOYLPROTEIN + CO2. It is part of the glycine decarboxylase multienzyme complex (GDC) consisting of four proteins P, H, L and T. Active site in E.coli is located as the (K) residues at position 713 of the SEED alignment.

>PRK12414 putative aminotransferase; Provisional

Probab=99.66  E-value=2.9e-14  Score=145.49  Aligned_cols=153  Identities=10%  Similarity=0.021  Sum_probs=112.8

Q ss_pred             cEEEeCcHHHHHHHHHHHHHHhcCCcccccCCCCCCCeEEEecCCCchHHHHHHHHhCCCCCcEEEEecCC-CCCcCHHH
Q psy14299          4 KPFLLPGGSISNMYSICLARYRLDPDTKRKGLSHLPPLCMFTSEDSHYSMLKAAHWLGIGMDNVIRVKTNE-RGQMICSF   82 (448)
Q Consensus         4 ~g~~t~ggT~an~~al~~a~~~~~~~~~~~G~~~~~~~~Vl~~~~~H~s~~~~~~~~g~~~~~v~~v~~~~-~g~id~e~   82 (448)
                      ..++|+|+++++..++.+...              +++.|+++...|..+...++..|.   +++.+|.++ ++.+|++.
T Consensus        92 ~i~it~g~~~al~~~~~~l~~--------------~gd~Vlv~~p~y~~~~~~~~~~g~---~~~~v~~~~~~~~~d~~~  154 (384)
T PRK12414         92 EVTVIASASEGLYAAISALVH--------------PGDEVIYFEPSFDSYAPIVRLQGA---TPVAIKLSPEDFRVNWDE  154 (384)
T ss_pred             cEEEECChHHHHHHHHHHhcC--------------CCCEEEEeCCCccchHHHHHHcCC---EEEEEecCccccccCHHH
Confidence            488999999998877765533              567788899999998888888888   788888874 56899999


Q ss_pred             HHHHHHHhhhcCCCcEEEEEeccCCccccc---cCHHHHHHHHHHcCCEEEEecccccccccccchhhh--hcCCCCccE
Q psy14299         83 LEQTIQTSLAEKKIPLFVNATAGTTVLGAF---DPLDEIATVCEKYDLWMHVDACWGGSLIFSEKYSFV--LKGINRANS  157 (448)
Q Consensus        83 Le~~l~~~~~~~~~~~lVv~~~~~t~tG~~---~~l~~I~~ia~~~g~~l~VD~A~~~~~~~~~~~~~~--~~~~~~aD~  157 (448)
                      |++.+++      ++++|++++++|+||.+   .++++|+++|++||+++++|++|.-..+........  ......--+
T Consensus       155 l~~~l~~------~~~~v~i~~p~NPTG~~~s~~~~~~i~~~a~~~~~~ii~De~Y~~~~~~~~~~~~~~~~~~~~~~~i  228 (384)
T PRK12414        155 VAAAITP------RTRMIIVNTPHNPSATVFSAADLARLAQLTRNTDIVILSDEVYEHVVFDGARHHSMARHRELAERSV  228 (384)
T ss_pred             HHhhcCc------ccEEEEEcCCCCCCCcCCCHHHHHHHHHHHHHCCeEEEEhhhhhhccCCCCCccCcccCcCccCcEE
Confidence            9998853      47899999999999987   568889999999999999999987543311110000  011111126


Q ss_pred             EEECCccccCCCC-ceEEEEEec
Q psy14299        158 VSWNPHKMLGAPL-QCSILLIKE  179 (448)
Q Consensus       158 ~~~s~hK~l~~P~-g~G~l~vr~  179 (448)
                      ++.|+.|.++.|. -+|+++..+
T Consensus       229 ~~~SfSK~~~~pGlRiG~~v~~~  251 (384)
T PRK12414        229 IVSSFGKSYHVTGWRVGYCLAPA  251 (384)
T ss_pred             EEecccccccCccceEEEEecCH
Confidence            7788999887553 357666543

>PRK08045 cystathionine gamma-synthase; Provisional

Probab=99.66  E-value=5.7e-14  Score=143.25  Aligned_cols=147  Identities=14%  Similarity=0.060  Sum_probs=109.2

Q ss_pred             cEEEeCcHHHHHHHHHHHHHHhcCCcccccCCCCCCCeEEEecCCCchHHHHHHH-HhCCCCCcEEEEecCCCCCcCHHH
Q psy14299          4 KPFLLPGGSISNMYSICLARYRLDPDTKRKGLSHLPPLCMFTSEDSHYSMLKAAH-WLGIGMDNVIRVKTNERGQMICSF   82 (448)
Q Consensus         4 ~g~~t~ggT~an~~al~~a~~~~~~~~~~~G~~~~~~~~Vl~~~~~H~s~~~~~~-~~g~~~~~v~~v~~~~~g~id~e~   82 (448)
                      ..++++||++++..++.+..+              +++.|+++...|.+....+. +...+...+..++     ..|+++
T Consensus        69 ~~i~~~sg~~Ai~~~l~~l~~--------------~GD~Vl~~~~~y~~~~~~~~~~~~~~gi~v~~vd-----~~d~e~  129 (386)
T PRK08045         69 GAVLTNTGMSAIHLVTTVFLK--------------PGDLLVAPHDCYGGSYRLFDSLAKRGCYRVLFVD-----QGDEQA  129 (386)
T ss_pred             eEEEECCHHHHHHHHHHHHcC--------------CCCEEEEcCCCcHHHHHHHHHHHhhCCeEEEEeC-----CCCHHH
Confidence            578899999988877765433              66788889888886554333 3322221444443     258999


Q ss_pred             HHHHHHHhhhcCCCcEEEEEeccCCccccccCHHHHHHHHHHcCCEEEEecccccccccccchhhhhcCCCCccEEEECC
Q psy14299         83 LEQTIQTSLAEKKIPLFVNATAGTTVLGAFDPLDEIATVCEKYDLWMHVDACWGGSLIFSEKYSFVLKGINRANSVSWNP  162 (448)
Q Consensus        83 Le~~l~~~~~~~~~~~lVv~~~~~t~tG~~~~l~~I~~ia~~~g~~l~VD~A~~~~~~~~~~~~~~~~~~~~aD~~~~s~  162 (448)
                      +++++++      ++++|.+++++|++|.+.|+++|.++|+++|++++||++|..+....+ .     . .++|+++.|+
T Consensus       130 l~~~l~~------~tklV~l~sP~NPtG~v~di~~I~~ia~~~g~~vivDeay~~~~~~~p-l-----~-~gaDivv~S~  196 (386)
T PRK08045        130 LRAALAE------KPKLVLVESPSNPLLRVVDIAKICHLAREAGAVSVVDNTFLSPALQNP-L-----A-LGADLVLHSC  196 (386)
T ss_pred             HHHhccc------CCeEEEEECCCCCCCEecCHHHHHHHHHHcCCEEEEECCCCccccCCc-h-----h-hCCCEEEeec
Confidence            9988854      478999999999999999999999999999999999999987654222 1     1 1479999999


Q ss_pred             ccccCCCCc--eEEEEEeccch
Q psy14299        163 HKMLGAPLQ--CSILLIKEKGL  182 (448)
Q Consensus       163 hK~l~~P~g--~G~l~vr~~~~  182 (448)
                      |||+++|.+  .|++..+++++
T Consensus       197 tK~l~G~~d~~~G~vi~~~~~~  218 (386)
T PRK08045        197 TKYLNGHSDVVAGVVIAKDPDV  218 (386)
T ss_pred             ceeccCCCCceeEEEEeCcHHH
Confidence            999999887  56665555443

>PRK07812 O-acetylhomoserine aminocarboxypropyltransferase; Validated

Probab=99.66  E-value=4.1e-14  Score=146.07  Aligned_cols=143  Identities=15%  Similarity=0.075  Sum_probs=108.4

Q ss_pred             cEEEeCcHHHHHHHHHHHHHHhcCCcccccCCCCCCCeEEEecCCCchHHHHHHH----HhCCCCCcEEEEecCCCCCcC
Q psy14299          4 KPFLLPGGSISNMYSICLARYRLDPDTKRKGLSHLPPLCMFTSEDSHYSMLKAAH----WLGIGMDNVIRVKTNERGQMI   79 (448)
Q Consensus         4 ~g~~t~ggT~an~~al~~a~~~~~~~~~~~G~~~~~~~~Vl~~~~~H~s~~~~~~----~~g~~~~~v~~v~~~~~g~id   79 (448)
                      .++++++|+.|+..++.+...              +++.|+++...|........    ..|+   +++.++ +.   .|
T Consensus        86 ~av~~sSG~aAi~~al~all~--------------~Gd~Vv~~~~~y~~t~~~~~~~l~~~Gi---~v~~vd-d~---~d  144 (436)
T PRK07812         86 AALLLASGQAAETFAILNLAG--------------AGDHIVSSPRLYGGTYNLFHYTLPKLGI---EVSFVE-DP---DD  144 (436)
T ss_pred             eEEEEccHHHHHHHHHHHHhC--------------CCCEEEEeCCcchHHHHHHHHHhhcCeE---EEEEEC-CC---CC
Confidence            468999999998888866543              56778888888877665433    2344   555554 22   28


Q ss_pred             HHHHHHHHHHhhhcCCCcEEEEEeccCCccccccCHHHHHHHHHHcCCEEEEecccccccccccchhhhhcCCCCccEEE
Q psy14299         80 CSFLEQTIQTSLAEKKIPLFVNATAGTTVLGAFDPLDEIATVCEKYDLWMHVDACWGGSLIFSEKYSFVLKGINRANSVS  159 (448)
Q Consensus        80 ~e~Le~~l~~~~~~~~~~~lVv~~~~~t~tG~~~~l~~I~~ia~~~g~~l~VD~A~~~~~~~~~~~~~~~~~~~~aD~~~  159 (448)
                      ++++++++++      ++++|++.+++|++|.+.|+++|+++||++|++++||++++.+....+.     .  .++|+++
T Consensus       145 ~e~l~~ai~~------~tklV~ie~~sNp~G~v~Dl~~I~~la~~~gi~liVD~t~a~~~~~~pl-----~--~GaDivv  211 (436)
T PRK07812        145 LDAWRAAVRP------NTKAFFAETISNPQIDVLDIPGVAEVAHEAGVPLIVDNTIATPYLIRPL-----E--HGADIVV  211 (436)
T ss_pred             HHHHHHhCCC------CCeEEEEECCCCCCCeecCHHHHHHHHHHcCCEEEEECCCcccccCCch-----h--cCCCEEE
Confidence            8999988854      5789999999999999999999999999999999999999876543221     1  1589999


Q ss_pred             ECCccccCCCCc-eEEEEEecc
Q psy14299        160 WNPHKMLGAPLQ-CSILLIKEK  180 (448)
Q Consensus       160 ~s~hK~l~~P~g-~G~l~vr~~  180 (448)
                      .|+||+++++.+ +|.+++...
T Consensus       212 ~S~tK~lgg~G~~i~G~vv~~~  233 (436)
T PRK07812        212 HSATKYLGGHGTAIAGVIVDGG  233 (436)
T ss_pred             EecccccCCCCCeEEEEEEcCC
Confidence            999999988743 566666443

>PRK06836 aspartate aminotransferase; Provisional

Probab=99.66  E-value=5.9e-14  Score=143.77  Aligned_cols=152  Identities=13%  Similarity=0.056  Sum_probs=113.4

Q ss_pred             cEEEeCcHHHHHHHHHHHHHHhcCCcccccCCCCCCCeEEEecCCCchHHHHHHHHhCCCCCcEEEEecCCC-CCcCHHH
Q psy14299          4 KPFLLPGGSISNMYSICLARYRLDPDTKRKGLSHLPPLCMFTSEDSHYSMLKAAHWLGIGMDNVIRVKTNER-GQMICSF   82 (448)
Q Consensus         4 ~g~~t~ggT~an~~al~~a~~~~~~~~~~~G~~~~~~~~Vl~~~~~H~s~~~~~~~~g~~~~~v~~v~~~~~-g~id~e~   82 (448)
                      ..++|+|+++++..++.....              +++.|+++...+..+...++..|+   +++.++.+++ +.+|+++
T Consensus        98 ~i~~t~G~~~al~~~~~~l~~--------------~gd~Vli~~p~~~~~~~~~~~~g~---~v~~v~~~~~~~~~d~~~  160 (394)
T PRK06836         98 HIVMTCGAAGALNVALKAILN--------------PGDEVIVFAPYFVEYRFYVDNHGG---KLVVVPTDTDTFQPDLDA  160 (394)
T ss_pred             cEEEeCChHHHHHHHHHHhcC--------------CCCEEEEcCCCCccHHHHHHHcCC---EEEEEecCCccCcCCHHH
Confidence            368999999998777665433              566788898898888888888888   7999998766 6899999


Q ss_pred             HHHHHHHhhhcCCCcEEEEEeccCCccccccC---HHHHHHHHHH------cCCEEEEecccccccccccchhhhhcCCC
Q psy14299         83 LEQTIQTSLAEKKIPLFVNATAGTTVLGAFDP---LDEIATVCEK------YDLWMHVDACWGGSLIFSEKYSFVLKGIN  153 (448)
Q Consensus        83 Le~~l~~~~~~~~~~~lVv~~~~~t~tG~~~~---l~~I~~ia~~------~g~~l~VD~A~~~~~~~~~~~~~~~~~~~  153 (448)
                      +++++++      ++++|++++++|+||...|   +++|+++|++      ||+++++|++|................. 
T Consensus       161 l~~~~~~------~~~~v~~~~p~NPtG~~~~~~~~~~l~~la~~~~~~~~~~~~ii~De~y~~~~~~~~~~~~~~~~~-  233 (394)
T PRK06836        161 LEAAITP------KTKAVIINSPNNPTGVVYSEETLKALAALLEEKSKEYGRPIYLISDEPYREIVYDGAEVPYIFKYY-  233 (394)
T ss_pred             HHhhcCc------CceEEEEeCCCCCCCcCCCHHHHHHHHHHHHHhhhccCCCeEEEEeccccccccCCCCCCChHHcc-
Confidence            9999854      4789999999999999877   6667778898      8999999999875433111111111111 


Q ss_pred             CccEEEECCccccCCCC-ceEEEEEec
Q psy14299        154 RANSVSWNPHKMLGAPL-QCSILLIKE  179 (448)
Q Consensus       154 ~aD~~~~s~hK~l~~P~-g~G~l~vr~  179 (448)
                      .-.++..|+.|.++.|. .+|+++..+
T Consensus       234 ~~~i~~~S~SK~~~~pGlRiG~~~~~~  260 (394)
T PRK06836        234 DNSIVVYSFSKSLSLPGERIGYIAVNP  260 (394)
T ss_pred             CcEEEEecchhhccCcceeeEEEecCH
Confidence            12477789999998653 577777644

>PTZ00125 ornithine aminotransferase-like protein; Provisional

Probab=99.66  E-value=1.6e-13  Score=140.73  Aligned_cols=161  Identities=17%  Similarity=0.133  Sum_probs=106.7

Q ss_pred             cEEEeCcHHHHHHHHHHHHHHhcCCcccccCCCCCCCeEEEecCCCchHHHHHHHHhCCCCC---------cEEEEecCC
Q psy14299          4 KPFLLPGGSISNMYSICLARYRLDPDTKRKGLSHLPPLCMFTSEDSHYSMLKAAHWLGIGMD---------NVIRVKTNE   74 (448)
Q Consensus         4 ~g~~t~ggT~an~~al~~a~~~~~~~~~~~G~~~~~~~~Vl~~~~~H~s~~~~~~~~g~~~~---------~v~~v~~~~   74 (448)
                      .++|+++||+||..|+..++....   .+.|++..+..+|......|-+........+....         .+..++.  
T Consensus        90 ~~~~~~SGs~A~e~al~~~~~~~~---~~~~~~~~~~~vl~~~~~~Hg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--  164 (400)
T PTZ00125         90 KVLPMNSGAEAGETALKFARKWGY---EVKGIPENQAKIIFCNGNFSGRTIGACSASTDPKCYNNFGPFVPGFELVDY--  164 (400)
T ss_pred             EEEEeCCcHHHHHHHHHHHHHHHH---hccCCCCCCCeEEEECCCcCCccHHHHhhcCCcchhccCCCCCCCceEeCC--
Confidence            478999999999999998875310   11232212345677777788877776665442110         1222222  


Q ss_pred             CCCcCHHHHHHHHHHhhhcCCCcEEEEEeccCCccccccC----HHHHHHHHHHcCCEEEEecccccccccccchhhhhc
Q psy14299         75 RGQMICSFLEQTIQTSLAEKKIPLFVNATAGTTVLGAFDP----LDEIATVCEKYDLWMHVDACWGGSLIFSEKYSFVLK  150 (448)
Q Consensus        75 ~g~id~e~Le~~l~~~~~~~~~~~lVv~~~~~t~tG~~~~----l~~I~~ia~~~g~~l~VD~A~~~~~~~~~~~~~~~~  150 (448)
                         .|+++|++.++.     .++++|+++.+.+++|.+.|    +++|.++|++||+++++|++|.+.......+.....
T Consensus       165 ---~d~~~le~~l~~-----~~~~~v~~ep~~~~~G~~~~~~~~l~~l~~l~~~~~~lli~Dev~~g~g~~G~~~~~~~~  236 (400)
T PTZ00125        165 ---NDVEALEKLLQD-----PNVAAFIVEPIQGEAGVIVPDDGYLKQVYELCKKYNVLLIVDEIQTGLGRTGKLLAHDHE  236 (400)
T ss_pred             ---CCHHHHHHHhCC-----CCeEEEEEcCccCCCCCccCCHHHHHHHHHHHHHcCCEEEEeccccCCCccchhhHHHhc
Confidence               289999999852     25788988888899999888    999999999999999999998632111100111112


Q ss_pred             CCCCccEEEECCccccCCCC-ceEEEEEecc
Q psy14299        151 GINRANSVSWNPHKMLGAPL-QCSILLIKEK  180 (448)
Q Consensus       151 ~~~~aD~~~~s~hK~l~~P~-g~G~l~vr~~  180 (448)
                      ++ ..|.++++  |+++++. .+|+++.+++
T Consensus       237 ~~-~pd~~~~s--K~l~~g~~~ig~v~~~~~  264 (400)
T PTZ00125        237 GV-KPDIVLLG--KALSGGLYPISAVLANDD  264 (400)
T ss_pred             CC-CCCEEEEc--ccccCCCcCcEEEEEcHH
Confidence            33 25877765  9998764 7888877554

>PLN02509 cystathionine beta-lyase

Probab=99.66  E-value=2.6e-14  Score=148.22  Aligned_cols=142  Identities=14%  Similarity=0.085  Sum_probs=107.5

Q ss_pred             cEEEeCcHHHHHHHHHHHHHHhcCCcccccCCCCCCCeEEEecCCCchHHHHHH----HHhCCCCCcEEEEecCCCCCcC
Q psy14299          4 KPFLLPGGSISNMYSICLARYRLDPDTKRKGLSHLPPLCMFTSEDSHYSMLKAA----HWLGIGMDNVIRVKTNERGQMI   79 (448)
Q Consensus         4 ~g~~t~ggT~an~~al~~a~~~~~~~~~~~G~~~~~~~~Vl~~~~~H~s~~~~~----~~~g~~~~~v~~v~~~~~g~id   79 (448)
                      .++++++|+.++ .++..+..              +++.|+++...|.+....+    ...|+   ++..++.     .|
T Consensus       150 ~ai~~~SG~aAi-~~il~ll~--------------~GD~VI~~~~~y~~t~~ll~~~l~~~G~---~v~~vd~-----~d  206 (464)
T PLN02509        150 RAFCFTSGMAAL-SAVTHLIK--------------NGEEIVAGDDVYGGSDRLLSQVVPRSGV---VVKRVNT-----TN  206 (464)
T ss_pred             EEEEeCcHHHHH-HHHHHHhC--------------CCCEEEEcCCchhhHHHHHHHHHHHCCe---EEEEeCC-----CC
Confidence            356778887664 33333222              6778899999998876443    34566   5666654     37


Q ss_pred             HHHHHHHHHHhhhcCCCcEEEEEeccCCccccccCHHHHHHHHHHcCCEEEEecccccccccccchhhhhcCCCCccEEE
Q psy14299         80 CSFLEQTIQTSLAEKKIPLFVNATAGTTVLGAFDPLDEIATVCEKYDLWMHVDACWGGSLIFSEKYSFVLKGINRANSVS  159 (448)
Q Consensus        80 ~e~Le~~l~~~~~~~~~~~lVv~~~~~t~tG~~~~l~~I~~ia~~~g~~l~VD~A~~~~~~~~~~~~~~~~~~~~aD~~~  159 (448)
                      ++++++++.+      ++++|++++++|++|.+.|+++|+++||+||++++||+||+.+....+.      + .++|+++
T Consensus       207 ~e~l~~ai~~------~TklV~lesPsNPtG~i~Dl~~I~~lAk~~g~~lIVD~A~a~~~~~~pl------~-~gaDivv  273 (464)
T PLN02509        207 LDEVAAAIGP------QTKLVWLESPTNPRQQISDIRKIAEMAHAQGALVLVDNSIMSPVLSRPL------E-LGADIVM  273 (464)
T ss_pred             HHHHHHhCCc------CCeEEEEECCCCCCCCHHHHHHHHHHHHHcCCEEEEECCccccccCChh------h-cCCcEEE
Confidence            8999888853      5789999999999999999999999999999999999999877652211      1 1589999


Q ss_pred             ECCccccCCCCc--eEEEEEeccc
Q psy14299        160 WNPHKMLGAPLQ--CSILLIKEKG  181 (448)
Q Consensus       160 ~s~hK~l~~P~g--~G~l~vr~~~  181 (448)
                      +|++||+++|.+  .|+++++++.
T Consensus       274 ~S~tK~l~G~gdv~gG~v~~~~~~  297 (464)
T PLN02509        274 HSATKFIAGHSDVMAGVLAVKGEK  297 (464)
T ss_pred             ecCcccccCCCccceeEEEeccHH
Confidence            999999999887  6777776543

>PLN02450 1-aminocyclopropane-1-carboxylate synthase

Probab=99.65  E-value=1.2e-13  Score=144.50  Aligned_cols=159  Identities=16%  Similarity=0.169  Sum_probs=113.1

Q ss_pred             EEEeCcHHHHHHHHHHHHHHhcCCcccccCCCCCCCeEEEecCCCchHHHHHHH-HhCCCCCcEEEEecC--CCCCcCHH
Q psy14299          5 PFLLPGGSISNMYSICLARYRLDPDTKRKGLSHLPPLCMFTSEDSHYSMLKAAH-WLGIGMDNVIRVKTN--ERGQMICS   81 (448)
Q Consensus         5 g~~t~ggT~an~~al~~a~~~~~~~~~~~G~~~~~~~~Vl~~~~~H~s~~~~~~-~~g~~~~~v~~v~~~--~~g~id~e   81 (448)
                      .++|+|+++++.+.+.+.++              +++.|+++...+..+...+. ..|.   +++.+|.+  ++..+|++
T Consensus       114 Iiit~Ga~~al~~l~~~l~~--------------pGd~Vlv~~P~Y~~~~~~~~~~~g~---~~v~v~~~~~~~~~~~~~  176 (468)
T PLN02450        114 LVLTAGATSANETLMFCLAE--------------PGDAFLLPTPYYPGFDRDLKWRTGV---EIVPIHCSSSNGFQITES  176 (468)
T ss_pred             eEEccChHHHHHHHHHHhCC--------------CCCEEEECCCCCCchHHHHhhcCCc---EEEEEecCCccCCcCCHH
Confidence            67888999997777666544              67789999888888877777 4677   78888875  35578999


Q ss_pred             HHHHHHHHhhhcCCCcEEEEEeccCCccccccC---HHHHHHHHHHcCCEEEEecccccccccccchhh---hhc-----
Q psy14299         82 FLEQTIQTSLAEKKIPLFVNATAGTTVLGAFDP---LDEIATVCEKYDLWMHVDACWGGSLIFSEKYSF---VLK-----  150 (448)
Q Consensus        82 ~Le~~l~~~~~~~~~~~lVv~~~~~t~tG~~~~---l~~I~~ia~~~g~~l~VD~A~~~~~~~~~~~~~---~~~-----  150 (448)
                      ++++++++..+++.++++|+++.++|+||.+.+   +++|.++|++||+++++|.+|+...+..+....   ...     
T Consensus       177 ~le~~~~~~~~~~~~~k~v~l~nP~NPTG~~~s~e~l~~ll~~a~~~~~~iI~DE~Y~~~~f~~~~~~s~l~~~~~~~~~  256 (468)
T PLN02450        177 ALEEAYQQAQKLNLKVKGVLITNPSNPLGTTTTRTELNLLVDFITAKNIHLISDEIYSGTVFDSPGFVSVMEVLKDRKLE  256 (468)
T ss_pred             HHHHHHHHHHhcCCCeeEEEEecCCCCCCcccCHHHHHHHHHHHHHCCcEEEEEccccccccCCCCcccHHHHhhhcccc
Confidence            999999775445567899999999999998876   567788899999999999999864332111100   000     


Q ss_pred             CC--CCccEEEECCccccCCC-CceEEEEEecc
Q psy14299        151 GI--NRANSVSWNPHKMLGAP-LQCSILLIKEK  180 (448)
Q Consensus       151 ~~--~~aD~~~~s~hK~l~~P-~g~G~l~vr~~  180 (448)
                      +.  ..-=.++.++.|.++.| .-+|+++..++
T Consensus       257 ~~~~~~~vi~l~S~SK~~~l~GlRiG~li~~~~  289 (468)
T PLN02450        257 NTDVSNRVHIVYSLSKDLGLPGFRVGAIYSNDE  289 (468)
T ss_pred             cCCCCCcEEEEEeccccCCCCCccEEEEEECCH
Confidence            00  00115567889988644 55777766433

>PRK04073 rocD ornithine--oxo-acid transaminase; Provisional

Probab=99.65  E-value=7.2e-14  Score=143.23  Aligned_cols=159  Identities=13%  Similarity=0.049  Sum_probs=103.6

Q ss_pred             cEEEeCcHHHHHHHHHHHHHHhcCCcccccCCCCCCCeEEEecCCCchHHHHHHHHhCCCC---------CcEEEEecCC
Q psy14299          4 KPFLLPGGSISNMYSICLARYRLDPDTKRKGLSHLPPLCMFTSEDSHYSMLKAAHWLGIGM---------DNVIRVKTNE   74 (448)
Q Consensus         4 ~g~~t~ggT~an~~al~~a~~~~~~~~~~~G~~~~~~~~Vl~~~~~H~s~~~~~~~~g~~~---------~~v~~v~~~~   74 (448)
                      .++|+++||+||..|+..+|....   ...|.....+.+|.++...|-+...+..+.+-..         ..+..++.+ 
T Consensus        99 ~~~~~~SGseA~e~Alk~a~~~~~---~~~g~~~~r~~ii~~~~~~HG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-  174 (396)
T PRK04073         99 MVLPMNTGAEAVETAIKAARRWAY---DVKGVEPNKAEIIACEGNFHGRTMAAVSLSSEEEYKRGFGPMLPGIKKIPYG-  174 (396)
T ss_pred             eEEEcCChHHHHHHHHHHHHHHhh---hccCCCCCCCEEEEECCCcCCCCHHHHhhcCCcccccCCCCCCCCceEeCCC-
Confidence            478999999999999999886410   0012110134456666778877666655544210         012334432 


Q ss_pred             CCCcCHHHHHHHHHHhhhcCCCcEEEEEeccCCccccccC----HHHHHHHHHHcCCEEEEecccccccccccchhhhhc
Q psy14299         75 RGQMICSFLEQTIQTSLAEKKIPLFVNATAGTTVLGAFDP----LDEIATVCEKYDLWMHVDACWGGSLIFSEKYSFVLK  150 (448)
Q Consensus        75 ~g~id~e~Le~~l~~~~~~~~~~~lVv~~~~~t~tG~~~~----l~~I~~ia~~~g~~l~VD~A~~~~~~~~~~~~~~~~  150 (448)
                          |++++++.+++      ++++|+++.+.+++|.+.|    +++|.++|++||+++++|++|.+.......+.....
T Consensus       175 ----d~~~l~~~i~~------~~~~viiep~~~~~G~~~~~~~~l~~l~~l~~~~g~lli~DEv~~g~g~~g~~~~~~~~  244 (396)
T PRK04073        175 ----DLEALKAAITP------NTAAFLVEPIQGEAGINIPPEGFLKAARELCKEENVLFIADEIQTGLGRTGKLFACDWD  244 (396)
T ss_pred             ----CHHHHHHhccc------CeEEEEEcCccCCCCCccCCHHHHHHHHHHHHHcCCEEEEecchhCCCcCcHHHHhhhc
Confidence                78899888853      4788999999999998866    899999999999999999998842211111111112


Q ss_pred             CCCCccEEEECCccccCCC-CceEEEEEec
Q psy14299        151 GINRANSVSWNPHKMLGAP-LQCSILLIKE  179 (448)
Q Consensus       151 ~~~~aD~~~~s~hK~l~~P-~g~G~l~vr~  179 (448)
                      ++ ..|++++  .|.++++ ..+|.+..++
T Consensus       245 ~~-~pdi~~~--sK~lg~gg~~ig~~~~~~  271 (396)
T PRK04073        245 NV-TPDMYIL--GKALGGGVFPISCVAANR  271 (396)
T ss_pred             CC-CCCEEEe--cccccCCCCcceEEEEcH
Confidence            22 3677775  5988776 4577776654

>COG1168 MalY Bifunctional PLP-dependent enzyme with beta-cystathionase and maltose regulon repressor activities [Amino acid transport and metabolism]

Probab=99.65  E-value=4.6e-14  Score=137.80  Aligned_cols=287  Identities=15%  Similarity=0.163  Sum_probs=184.5

Q ss_pred             EEEeCcHHHHHHHHHHHHHHhcCCcccccCCCCCCCeEEEecCCCchHHHHHHHHhCCCCCcEEEEecC-CCC--CcCHH
Q psy14299          5 PFLLPGGSISNMYSICLARYRLDPDTKRKGLSHLPPLCMFTSEDSHYSMLKAAHWLGIGMDNVIRVKTN-ERG--QMICS   81 (448)
Q Consensus         5 g~~t~ggT~an~~al~~a~~~~~~~~~~~G~~~~~~~~Vl~~~~~H~s~~~~~~~~g~~~~~v~~v~~~-~~g--~id~e   81 (448)
                      .+|++|---++-+++....+              +++.|++....++.+.+.....|.   ++...|.- +++  .||.+
T Consensus        86 i~~~p~VVpgi~~~I~~~T~--------------~gd~Vvi~tPvY~PF~~~i~~n~R---~~i~~pL~~~~~~y~iD~~  148 (388)
T COG1168          86 IVFVPGVVPGISLAIRALTK--------------PGDGVVIQTPVYPPFYNAIKLNGR---KVIENPLVEDDGRYEIDFD  148 (388)
T ss_pred             EEEcCcchHhHHHHHHHhCc--------------CCCeeEecCCCchHHHHHHhhcCc---EEEeccccccCCcEEecHH
Confidence            45555555555555544333              677788888899999999988877   78888765 344  67999


Q ss_pred             HHHHHHHHhhhcCCCcEEEEEeccCCccccc---cCHHHHHHHHHHcCCEEEEecccccccccccc-hhhh-hc-CCCCc
Q psy14299         82 FLEQTIQTSLAEKKIPLFVNATAGTTVLGAF---DPLDEIATVCEKYDLWMHVDACWGGSLIFSEK-YSFV-LK-GINRA  155 (448)
Q Consensus        82 ~Le~~l~~~~~~~~~~~lVv~~~~~t~tG~~---~~l~~I~~ia~~~g~~l~VD~A~~~~~~~~~~-~~~~-~~-~~~~a  155 (448)
                      +||+.+.+     .++++.+++++.|++|.+   ++|.+|+++|++||+.++.|..|.-..+.... .... ++ ....-
T Consensus       149 ~LE~~~~~-----~~vkl~iLCnPHNP~Grvwt~eeL~~i~elc~kh~v~VISDEIHaDlv~~g~~h~~~a~ls~~~a~~  223 (388)
T COG1168         149 ALEKAFVD-----ERVKLFILCNPHNPTGRVWTKEELRKIAELCLRHGVRVISDEIHADLVLGGHKHIPFASLSERFADN  223 (388)
T ss_pred             HHHHHHhc-----CCccEEEEeCCCCCCCccccHHHHHHHHHHHHHcCCEEEeecccccccccCCCccchhhcChhhhcc
Confidence            99999976     357899999999999966   77999999999999999999987754443211 1100 00 00011


Q ss_pred             cEEEECCccccCCC-CceEEEEEeccchhhhhccCCcccccccCcccccccCCCCCcccCCCCchhHHHHHHHHHhChHH
Q psy14299        156 NSVSWNPHKMLGAP-LQCSILLIKEKGLLHQANATAATYLFQQDKFYDVSFDTGDKSVQCGRKVDAFKLWLMWKARGNLG  234 (448)
Q Consensus       156 D~~~~s~hK~l~~P-~g~G~l~vr~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~g  234 (448)
                      -+.+.++.|.+..+ -.++.+++.++....+.... -.....                                      
T Consensus       224 ~it~~saSKtFNlaGL~~a~~Ii~n~~lr~~~~~~-l~~~~~--------------------------------------  264 (388)
T COG1168         224 SITLTSASKTFNLAGLKCAYIIISNRELRAKFLKR-LKRNGL--------------------------------------  264 (388)
T ss_pred             eEEEeeccccccchhhhheeEEecCHHHHHHHHHH-HHHhcC--------------------------------------
Confidence            24556778987765 34555666554321111100 000000                                      


Q ss_pred             HHHHHHHhhhhccCCCccchhhhhhhhhhhhhhhhhhhhhhhccccccccccCCCCCccccccchhhHHHHHHHHHhcCc
Q psy14299        235 FRHFVDNAVDCSRGSMTFSTLLCFDLQGLLHQANATAATYLFQQDKFYDVSFDTGDKSVQCGRKVDAFKLWLMWKARGNL  314 (448)
Q Consensus       235 ~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  314 (448)
                                                                                 ...+..++++..++++ .|..
T Consensus       265 -----------------------------------------------------------~~~n~lg~~A~~aAY~-~G~~  284 (388)
T COG1168         265 -----------------------------------------------------------HGPSALGIIATEAAYN-QGEP  284 (388)
T ss_pred             -----------------------------------------------------------CCCchHHHHHHHHHHH-hchH
Confidence                                                                       0001112222223333 3778


Q ss_pred             cHHHHHHHHHHHHHHHHHHhhc-CCCeEEeccCCceeeEEEEeeccCCCccccchhhhhhhhhhhHHHHHHHHhCCcEEE
Q psy14299        315 GFRHFVDNAVDCSRYFLSQISQ-RPGFRLVIPEFQCTNICFWFIPVSLRDKVEDETWWSTLSKVAPRIKEKLVLGGTLMI  393 (448)
Q Consensus       315 G~~~~~~~~~~l~~~~~~~L~~-~pg~~l~~~~~~~~~v~f~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~L~~~g~~~~  393 (448)
                      ++++..+...++.+++.+.+.+ +|++++.  +|+.+ ...++....+             +....++.+.|+++..+.+
T Consensus       285 WLd~L~~yl~~N~~~~~~~l~~~~P~v~v~--~p~gT-YL~WLD~r~l-------------~l~d~~l~~~ll~~akVal  348 (388)
T COG1168         285 WLDELLEYLKDNRDYVADFLNKHLPGVKVT--EPQGT-YLAWLDCREL-------------GLDDSELAEFLLEEAKVAL  348 (388)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhhCCCcEEe--cCCCc-eeeeeecccc-------------CCChHHHHHHHHHhhcEec
Confidence            8999999999999999999997 5899985  44433 3333332211             1112478888999888988


Q ss_pred             EeeecCCcccccEEEEEecCCCCCCHHHHHHHHHHHHHH
Q psy14299        394 GYQPLQHRNLHNFFRLVTTCHPASSRQDMDYAIDQIELR  432 (448)
Q Consensus       394 ~~~~~~g~~~~~~lRis~~~~~~~t~edid~l~~al~~~  432 (448)
                      ..+...|.++.+++|+.+.|    +++-++..++.|+..
T Consensus       349 ~~G~~FG~~g~gf~RlN~ac----pr~~L~eal~ri~~a  383 (388)
T COG1168         349 SPGSTFGEEGSGFVRLNFAC----PRAILEEALERLKRA  383 (388)
T ss_pred             cCCCccCcCCCceEEEecCC----CHHHHHHHHHHHHHH
Confidence            88888887777999999986    555444444444433

>PRK08068 transaminase; Reviewed

Probab=99.65  E-value=5.2e-14  Score=143.88  Aligned_cols=151  Identities=10%  Similarity=0.012  Sum_probs=108.9

Q ss_pred             cEEEeCcHHHHHHHHHHHHHHhcCCcccccCCCCCCCeEEEecCCCchHHHHHHHHhCCCCCcEEEEecCC--CCCcCHH
Q psy14299          4 KPFLLPGGSISNMYSICLARYRLDPDTKRKGLSHLPPLCMFTSEDSHYSMLKAAHWLGIGMDNVIRVKTNE--RGQMICS   81 (448)
Q Consensus         4 ~g~~t~ggT~an~~al~~a~~~~~~~~~~~G~~~~~~~~Vl~~~~~H~s~~~~~~~~g~~~~~v~~v~~~~--~g~id~e   81 (448)
                      ..++|+|+++++..++.+...              +++.|+++..++..+...++..|+   +++.+|.++  +..+|++
T Consensus        96 ~i~it~G~~~~l~~~~~~~~~--------------~gd~vlv~~P~y~~~~~~~~~~g~---~~~~i~~~~~~~~~~d~~  158 (389)
T PRK08068         96 EVAILFGGKAGLVELPQCLMN--------------PGDTILVPDPGYPDYLSGVALARA---QFETMPLIAENNFLPDYT  158 (389)
T ss_pred             cEEEcCCcHHHHHHHHHHhCC--------------CCCEEEEcCCCCcchHHHHHhcCC---EEEEeecccccCCCCCHH
Confidence            367899999997776554433              567799999999999999999998   788999875  3578999


Q ss_pred             HHHHHHHHhhhcCCCcEEEEEeccCCccccccCH---HHHHHHHHHcCCEEEEecccccccccccchhhhhc--CCCCcc
Q psy14299         82 FLEQTIQTSLAEKKIPLFVNATAGTTVLGAFDPL---DEIATVCEKYDLWMHVDACWGGSLIFSEKYSFVLK--GINRAN  156 (448)
Q Consensus        82 ~Le~~l~~~~~~~~~~~lVv~~~~~t~tG~~~~l---~~I~~ia~~~g~~l~VD~A~~~~~~~~~~~~~~~~--~~~~aD  156 (448)
                      ++++.+.+      ++++|+++.++|+||.+.+.   ++|.++|++||+++++|.+|+-.............  +.....
T Consensus       159 ~l~~~~~~------~~~~v~l~~P~NPTG~~~s~~~~~~l~~la~~~~~~ii~Deay~~~~~~~~~~~s~~~~~~~~~~~  232 (389)
T PRK08068        159 KIPEEVAE------KAKLMYLNYPNNPTGAVATKAFFEETVAFAKKHNIGVVHDFAYGAIGFDGQKPVSFLQTPGAKDVG  232 (389)
T ss_pred             HHHHhccc------cceEEEEECCCCCCCCcCCHHHHHHHHHHHHHcCeEEEEehhhhhhccCCCCCcChhhCCCccCCE
Confidence            99988853      47899999999999998775   67788999999999999998643221100000011  111123


Q ss_pred             EEEECCccccCCCC-ceEEEEE
Q psy14299        157 SVSWNPHKMLGAPL-QCSILLI  177 (448)
Q Consensus       157 ~~~~s~hK~l~~P~-g~G~l~v  177 (448)
                      +++.|+.|.++.|. -+|+++.
T Consensus       233 i~~~S~SK~~g~~GlRiG~~~~  254 (389)
T PRK08068        233 IELYTLSKTFNMAGWRVAFAVG  254 (389)
T ss_pred             EEEecchhccCCccceeEeEec
Confidence            66678999886542 3566654

>COG0399 WecE Predicted pyridoxal phosphate-dependent enzyme apparently involved in regulation of cell wall biogenesis [Cell envelope biogenesis, outer membrane]

Probab=99.65  E-value=5.2e-14  Score=140.71  Aligned_cols=154  Identities=12%  Similarity=0.115  Sum_probs=123.3

Q ss_pred             cEEEeCcHHHHHHHHHHHHHHhcCCcccccCCCCCCCeEEEecCCCchHHHHHHHHhCCCCCcEEEEecCCC-CCcCHHH
Q psy14299          4 KPFLLPGGSISNMYSICLARYRLDPDTKRKGLSHLPPLCMFTSEDSHYSMLKAAHWLGIGMDNVIRVKTNER-GQMICSF   82 (448)
Q Consensus         4 ~g~~t~ggT~an~~al~~a~~~~~~~~~~~G~~~~~~~~Vl~~~~~H~s~~~~~~~~g~~~~~v~~v~~~~~-g~id~e~   82 (448)
                      .++.+++||.|+.+++.++-  +           .|++.|+++..+..+...+..+.|.   +.+.+.+|++ +.||++.
T Consensus        51 ~ava~~sgT~AL~laL~al~--i-----------g~GDeVI~ps~TfvATan~i~~~Ga---~PVFvDid~~T~nid~~~  114 (374)
T COG0399          51 YAVAVSSGTAALHLALLALA--I-----------GPGDEVIVPSFTFVATANAVLLVGA---KPVFVDIDPDTLNIDPDL  114 (374)
T ss_pred             eEEEecChHHHHHHHHHhcC--C-----------CCCCEEEecCCchHHHHHHHHHcCC---eEEEEecCCcccCCCHHH
Confidence            46889999999999987533  2           3788999999999999999999999   7889999865 8999999


Q ss_pred             HHHHHHHhhhcCCCcEEEEEeccCCccccccCHHHHHHHHHHcCCEEEEecccccccccccchhhhhcCCCCccEEEECC
Q psy14299         83 LEQTIQTSLAEKKIPLFVNATAGTTVLGAFDPLDEIATVCEKYDLWMHVDACWGGSLIFSEKYSFVLKGINRANSVSWNP  162 (448)
Q Consensus        83 Le~~l~~~~~~~~~~~lVv~~~~~t~tG~~~~l~~I~~ia~~~g~~l~VD~A~~~~~~~~~~~~~~~~~~~~aD~~~~s~  162 (448)
                      ||++|.+      ++++|+.+|   ..|...|+++|.++|++||++++-|+||+.|...-...-   -.++.+-+++|-+
T Consensus       115 ie~aIt~------~tKAIipVh---l~G~~~dm~~i~~la~~~~l~vIEDaAqa~Ga~y~gk~v---Gt~Gd~~~fSF~~  182 (374)
T COG0399         115 IEAAITP------RTKAIIPVH---LAGQPCDMDAIMALAKRHGLPVIEDAAQAHGATYKGKKV---GSFGDIGAFSFHA  182 (374)
T ss_pred             HHHHccc------CCeEEEEeh---hccCCCCHHHHHHHHHHcCCeEEEEcchhccCeecCccc---ccccceEEEEecC
Confidence            9999976      488999887   368888999999999999999999999999887544321   2233345666777


Q ss_pred             ccccCCCCceEEEEEeccchhhhh
Q psy14299        163 HKMLGAPLQCSILLIKEKGLLHQA  186 (448)
Q Consensus       163 hK~l~~P~g~G~l~vr~~~~~~~~  186 (448)
                      +|.+.+- ..|++..+++++....
T Consensus       183 ~K~ittg-EGGav~tnd~ela~k~  205 (374)
T COG0399         183 TKNLTTG-EGGAVVTNDEELAEKA  205 (374)
T ss_pred             CCCcccc-CceEEEeCCHHHHHHH
Confidence            7988765 5677777776655443

>PRK07050 cystathionine beta-lyase; Provisional

Probab=99.65  E-value=1.7e-14  Score=147.50  Aligned_cols=145  Identities=12%  Similarity=0.042  Sum_probs=112.3

Q ss_pred             cEEEeCcHHHHHHHHHHHHHHhcCCcccccCCCCCCCeEEEecCCCchHHHH----HHHHhCCCCCcEEEEecCCCCCcC
Q psy14299          4 KPFLLPGGSISNMYSICLARYRLDPDTKRKGLSHLPPLCMFTSEDSHYSMLK----AAHWLGIGMDNVIRVKTNERGQMI   79 (448)
Q Consensus         4 ~g~~t~ggT~an~~al~~a~~~~~~~~~~~G~~~~~~~~Vl~~~~~H~s~~~----~~~~~g~~~~~v~~v~~~~~g~id   79 (448)
                      .+++++|||+|+.+++.+..+              +++.|+++...|.+...    .+...|+   ++..++..     +
T Consensus        82 ~~l~~~sgt~Ai~~~l~al~~--------------~GD~Vl~~~~~y~~~~~~~~~~~~~~Gi---~v~~vd~~-----~  139 (394)
T PRK07050         82 HALLQPSGLAAISLVYFGLVK--------------AGDDVLIPDNAYGPNRDHGEWLARDFGI---TVRFYDPL-----I  139 (394)
T ss_pred             eEEEeccHHHHHHHHHHHHhC--------------CCCEEEEecCCcccHHHHHHHHHHhcCe---EEEEECCC-----C
Confidence            478999999999988877643              67789999999987664    3455566   67766543     4


Q ss_pred             HHHHHHHHHHhhhcCCCcEEEEEeccCCccccccCHHHHHHHHHHcCCEEEEecccccccccccchhhhhcCCCCccEEE
Q psy14299         80 CSFLEQTIQTSLAEKKIPLFVNATAGTTVLGAFDPLDEIATVCEKYDLWMHVDACWGGSLIFSEKYSFVLKGINRANSVS  159 (448)
Q Consensus        80 ~e~Le~~l~~~~~~~~~~~lVv~~~~~t~tG~~~~l~~I~~ia~~~g~~l~VD~A~~~~~~~~~~~~~~~~~~~~aD~~~  159 (448)
                      .+++++++++      ++++|++++++|++|...|+++|+++|+++|+++++|++|+.+...-+ .   .  . ++|+++
T Consensus       140 ~~~l~~~i~~------~tklV~le~p~Np~~~~~di~~I~~ia~~~gi~livD~a~a~~~~~~~-l---~--~-GaDi~v  206 (394)
T PRK07050        140 GAGIADLIQP------NTRLIWLEAPGSVTMEVPDVPAITAAARARGVVTAIDNTYSAGLAFKP-F---E--H-GVDISV  206 (394)
T ss_pred             HHHHHHhcCC------CCeEEEEECCCCCCccHhhHHHHHHHHHHcCCEEEEECCcccccccCH-H---H--c-CCeEEE
Confidence            5778887754      589999999999999999999999999999999999999988765221 1   1  1 479999


Q ss_pred             ECCccccCCCCc--eEEEEEeccchh
Q psy14299        160 WNPHKMLGAPLQ--CSILLIKEKGLL  183 (448)
Q Consensus       160 ~s~hK~l~~P~g--~G~l~vr~~~~~  183 (448)
                      .|.+|++++..+  .|.++++++++.
T Consensus       207 ~S~tK~~~g~~~~~gG~v~~~~~~~~  232 (394)
T PRK07050        207 QALTKYQSGGSDVLMGATITADAELH  232 (394)
T ss_pred             EECCceecCCCCeeEEEEEECCHHHH
Confidence            999999987765  455666565443

>PRK07504 O-succinylhomoserine sulfhydrylase; Reviewed

Probab=99.65  E-value=4.4e-14  Score=144.76  Aligned_cols=143  Identities=11%  Similarity=0.026  Sum_probs=106.7

Q ss_pred             EEEeCcHHHHHHHHHHHHHHhcCCcccccCCCCCCCeEEEecCCCchHHHHHH----HHhCCCCCcEEEEecCCCCCcCH
Q psy14299          5 PFLLPGGSISNMYSICLARYRLDPDTKRKGLSHLPPLCMFTSEDSHYSMLKAA----HWLGIGMDNVIRVKTNERGQMIC   80 (448)
Q Consensus         5 g~~t~ggT~an~~al~~a~~~~~~~~~~~G~~~~~~~~Vl~~~~~H~s~~~~~----~~~g~~~~~v~~v~~~~~g~id~   80 (448)
                      .+.+++|+.++..++.+...              +++.|+++...|.+.....    ...|+   +++.++     .+|+
T Consensus        83 ~~~~~sG~~Ai~~~l~~~l~--------------~Gd~Vl~~~~~y~~~~~~~~~~~~~~G~---~v~~vd-----~~d~  140 (398)
T PRK07504         83 ARATASGMAAVTAAILCQVK--------------AGDHVVAARALFGSCRYVVETLLPRYGI---ESTLVD-----GLDL  140 (398)
T ss_pred             eeEecCHHHHHHHHHHHHhC--------------CCCEEEEcCCchhHHHHHHHHHHhhcCe---EEEEEC-----CCCH
Confidence            45688999998777655433              5677888888777654433    33455   566664     3699


Q ss_pred             HHHHHHHHHhhhcCCCcEEEEEeccCCccccccCHHHHHHHHHHcCCEEEEecccccccccccchhhhhcCCCCccEEEE
Q psy14299         81 SFLEQTIQTSLAEKKIPLFVNATAGTTVLGAFDPLDEIATVCEKYDLWMHVDACWGGSLIFSEKYSFVLKGINRANSVSW  160 (448)
Q Consensus        81 e~Le~~l~~~~~~~~~~~lVv~~~~~t~tG~~~~l~~I~~ia~~~g~~l~VD~A~~~~~~~~~~~~~~~~~~~~aD~~~~  160 (448)
                      +++++++++      ++++|++++++|++|.+.|+++|.++|+++|++++||++|+.+....+.      .. ++|+++.
T Consensus       141 e~l~~ai~~------~tklV~lesp~NptG~v~dl~~I~~la~~~gi~lvvD~a~a~~~~~~~~------~~-gaDivv~  207 (398)
T PRK07504        141 DNWEKAVRP------NTKVFFLESPTNPTLEVIDIAAVAKIANQAGAKLVVDNVFATPLFQKPL------EL-GAHIVVY  207 (398)
T ss_pred             HHHHHhcCc------CceEEEEECCCCCCcEecCHHHHHHHHHHcCCEEEEECCccccccCCch------hh-CCCEEEe
Confidence            999998854      5889999999999999999999999999999999999999866542111      11 4799999


Q ss_pred             CCccccCCCC-ceEEEEEeccch
Q psy14299        161 NPHKMLGAPL-QCSILLIKEKGL  182 (448)
Q Consensus       161 s~hK~l~~P~-g~G~l~vr~~~~  182 (448)
                      |+||++++|. ..|.+++.+++.
T Consensus       208 S~sK~l~g~g~~~GG~vv~~~~~  230 (398)
T PRK07504        208 SATKHIDGQGRCLGGVVLSDKAW  230 (398)
T ss_pred             eccccccCCccceEEEEEeCcHH
Confidence            9999998875 344444545443

>PLN02607 1-aminocyclopropane-1-carboxylate synthase

Probab=99.65  E-value=1.3e-13  Score=143.16  Aligned_cols=159  Identities=16%  Similarity=0.199  Sum_probs=115.1

Q ss_pred             EEEeCcHHHHHHHHHHHHHHhcCCcccccCCCCCCCeEEEecCCCchHHHHHHH-HhCCCCCcEEEEecCC--CCCcCHH
Q psy14299          5 PFLLPGGSISNMYSICLARYRLDPDTKRKGLSHLPPLCMFTSEDSHYSMLKAAH-WLGIGMDNVIRVKTNE--RGQMICS   81 (448)
Q Consensus         5 g~~t~ggT~an~~al~~a~~~~~~~~~~~G~~~~~~~~Vl~~~~~H~s~~~~~~-~~g~~~~~v~~v~~~~--~g~id~e   81 (448)
                      .++|+|+|.++.+.+.+.+.              |++.|+++...+..+..... ..|+   +++.++.++  ++.+|++
T Consensus       123 Ivit~G~t~al~~l~~~l~~--------------pGD~Vlv~~P~Y~~f~~~~~~~~g~---~vv~v~~~~~~~f~~~~~  185 (447)
T PLN02607        123 IVLTAGATAANELLTFILAD--------------PGDALLVPTPYYPGFDRDLRWRTGV---KIVPIHCDSSNNFQVTPQ  185 (447)
T ss_pred             eEEcCChHHHHHHHHHHhCC--------------CCCEEEEcCCCCcchHHHHHhcCCc---EEEEEeCCCCCCCcCCHH
Confidence            67899999997776655443              67789999888888877666 3566   688888764  3468999


Q ss_pred             HHHHHHHHhhhcCCCcEEEEEeccCCccccccC---HHHHHHHHHHcCCEEEEecccccccccccch---hhhhcCC---
Q psy14299         82 FLEQTIQTSLAEKKIPLFVNATAGTTVLGAFDP---LDEIATVCEKYDLWMHVDACWGGSLIFSEKY---SFVLKGI---  152 (448)
Q Consensus        82 ~Le~~l~~~~~~~~~~~lVv~~~~~t~tG~~~~---l~~I~~ia~~~g~~l~VD~A~~~~~~~~~~~---~~~~~~~---  152 (448)
                      ++++++++..+++.++++++++.++|++|...+   +++|.++|++||+++++|.+|+...+..+..   ......+   
T Consensus       186 ~le~a~~~a~~~~~~vk~lll~nP~NPtG~~~s~e~l~~l~~~~~~~~i~lI~DEiYa~~~f~~~~f~S~~s~~~~~~~~  265 (447)
T PLN02607        186 ALEAAYQEAEAANIRVRGVLITNPSNPLGATVQRSVLEDILDFVVRKNIHLVSDEIYSGSVFSASEFVSVAEIVEARGYK  265 (447)
T ss_pred             HHHHHHHHHHHhCCCeeEEEEeCCCCCcCcccCHHHHHHHHHHHHHCCCEEEEeccccccccCCCCcccHHHHHhhcCCC
Confidence            999999876666778999999999999998876   7888899999999999999998654421111   1001111   


Q ss_pred             ---CCccEEEECCccccCCC-CceEEEEEeccc
Q psy14299        153 ---NRANSVSWNPHKMLGAP-LQCSILLIKEKG  181 (448)
Q Consensus       153 ---~~aD~~~~s~hK~l~~P-~g~G~l~vr~~~  181 (448)
                         +.+ .++.+..|.++.| .-+|+++..++.
T Consensus       266 ~~~~~v-~vi~s~SK~fg~~GlRvG~ivs~n~~  297 (447)
T PLN02607        266 GVAERV-HIVYSLSKDLGLPGFRVGTIYSYNDK  297 (447)
T ss_pred             CCcCcE-EEEEcchhcCCCCcceEEEEEEcCHH
Confidence               011 4456889988755 446777664443

>PRK05166 histidinol-phosphate aminotransferase; Provisional

Probab=99.65  E-value=4e-14  Score=143.83  Aligned_cols=155  Identities=17%  Similarity=0.101  Sum_probs=112.1

Q ss_pred             cEEEeCcHHHHHHHHHHHHHHhcCCcccccCCCCCCCeEEEecCCCchHHHHHHHHhCCCCCcEEEEecCCCCCcCHHHH
Q psy14299          4 KPFLLPGGSISNMYSICLARYRLDPDTKRKGLSHLPPLCMFTSEDSHYSMLKAAHWLGIGMDNVIRVKTNERGQMICSFL   83 (448)
Q Consensus         4 ~g~~t~ggT~an~~al~~a~~~~~~~~~~~G~~~~~~~~Vl~~~~~H~s~~~~~~~~g~~~~~v~~v~~~~~g~id~e~L   83 (448)
                      ..++|+|+++++...+.+..+              +++.|++....+......++..|.   +++.++.++++.+|++++
T Consensus        90 ~i~~t~G~~~~l~~~~~~~~~--------------~gd~vli~~P~y~~~~~~~~~~g~---~~~~v~~~~~~~~~~~~l  152 (371)
T PRK05166         90 RIILGNGSEDLIAVICRAVLR--------------PGDRVVTLYPSFPLHEDYPTMMGA---RVERVTVTPDLGFDLDAL  152 (371)
T ss_pred             HEEEcCCHHHHHHHHHHHhcC--------------CCCEEEEcCCChHHHHHHHHHcCC---eEEEeecCCCCCCCHHHH
Confidence            468999999997666655433              567788898999888888898888   789999988889999999


Q ss_pred             HHHHHHhhhcCCCcEEEEEeccCCccccccCHHHHHHHHHH--cCCEEEEecccccccccccchhh---hhcCCCCccEE
Q psy14299         84 EQTIQTSLAEKKIPLFVNATAGTTVLGAFDPLDEIATVCEK--YDLWMHVDACWGGSLIFSEKYSF---VLKGINRANSV  158 (448)
Q Consensus        84 e~~l~~~~~~~~~~~lVv~~~~~t~tG~~~~l~~I~~ia~~--~g~~l~VD~A~~~~~~~~~~~~~---~~~~~~~aD~~  158 (448)
                      ++.+++      ++++|++++++|+||.+.|.+++.++++.  +++++++|++|.-... ......   .......--++
T Consensus       153 ~~~~~~------~~~~v~l~~p~NPtG~~~~~~~~~~l~~~~~~~~~ii~De~y~~~~~-~~~~~~~~~~~~~~~~~vi~  225 (371)
T PRK05166        153 CAAVAR------APRMLMFSNPSNPVGSWLTADQLARVLDATPPETLIVVDEAYAEYAA-GDDYPSALTLLKARGLPWIV  225 (371)
T ss_pred             HHhhhc------CCCEEEEeCCCCCCCCCCCHHHHHHHHHhCCCCcEEEEECcHHHhcC-CcCcccHHHHHhhcCCCEEE
Confidence            998864      46789999999999999998777777664  4889999999875442 111011   11111111256


Q ss_pred             EECCccccCCC-CceEEEEEeccch
Q psy14299        159 SWNPHKMLGAP-LQCSILLIKEKGL  182 (448)
Q Consensus       159 ~~s~hK~l~~P-~g~G~l~vr~~~~  182 (448)
                      +.|+.|.++.| .-+|++++.++.+
T Consensus       226 i~SfSK~~~l~GlRiG~~i~~~~~l  250 (371)
T PRK05166        226 LRTFSKAYGLAGLRVGYGLVSDPEL  250 (371)
T ss_pred             EeechHhhhcchhheeeeecCCHHH
Confidence            77899988744 3467766655443

>PRK08574 cystathionine gamma-synthase; Provisional

Probab=99.65  E-value=7.7e-14  Score=142.27  Aligned_cols=147  Identities=10%  Similarity=-0.016  Sum_probs=111.0

Q ss_pred             cEEEeCcHHHHHHHHHHHHHHhcCCcccccCCCCCCCeEEEecCCCchHHHHHHHHhCCCCCcEEEEecCCCCCcCHHHH
Q psy14299          4 KPFLLPGGSISNMYSICLARYRLDPDTKRKGLSHLPPLCMFTSEDSHYSMLKAAHWLGIGMDNVIRVKTNERGQMICSFL   83 (448)
Q Consensus         4 ~g~~t~ggT~an~~al~~a~~~~~~~~~~~G~~~~~~~~Vl~~~~~H~s~~~~~~~~g~~~~~v~~v~~~~~g~id~e~L   83 (448)
                      .++++++|+.|+..++.....              +++.|+++...|.+....++.......++..+.      +|++++
T Consensus        70 ~~l~~~sG~~Ai~~~l~~ll~--------------~GD~Vlv~~~~y~~~~~~~~~~~~~g~~v~~~~------~d~~~l  129 (385)
T PRK08574         70 DALAFNSGMAAISTLFFSLLK--------------AGDRVVLPMEAYGTTLRLLKSLEKFGVKVVLAY------PSTEDI  129 (385)
T ss_pred             cEEEeCCHHHHHHHHHHHHhC--------------CCCEEEEcCCCchhHHHHHHHhhccCcEEEEEC------CCHHHH
Confidence            468899999998888776543              677899999999998877754321111444442      368889


Q ss_pred             HHHHHHhhhcCCCcEEEEEeccCCccccccCHHHHHHHHHHcCCEEEEecccccccccccchhhhhcCCCCccEEEECCc
Q psy14299         84 EQTIQTSLAEKKIPLFVNATAGTTVLGAFDPLDEIATVCEKYDLWMHVDACWGGSLIFSEKYSFVLKGINRANSVSWNPH  163 (448)
Q Consensus        84 e~~l~~~~~~~~~~~lVv~~~~~t~tG~~~~l~~I~~ia~~~g~~l~VD~A~~~~~~~~~~~~~~~~~~~~aD~~~~s~h  163 (448)
                      ++++++     .++++|++..++|++|.+.|+++|+++||++|+++++|++|+.+....+.    .   .++|+++.|++
T Consensus       130 ~~~i~~-----~~tklV~ie~p~NPtG~v~dl~~I~~la~~~gi~livD~t~a~~~~~~~l----~---~GaDivv~S~s  197 (385)
T PRK08574        130 IEAIKE-----GRTKLVFIETMTNPTLKVIDVPEVAKAAKELGAILVVDNTFATPLLYRPL----R---HGADFVVHSLT  197 (385)
T ss_pred             HHhcCc-----cCceEEEEECCCCCCCEecCHHHHHHHHHHcCCEEEEECCCCccccCChh----h---hCCcEEEeeCc
Confidence            888854     15789999999999999999999999999999999999999876542211    1   14799999999


Q ss_pred             cccCCCCc--eEEEEEeccch
Q psy14299        164 KMLGAPLQ--CSILLIKEKGL  182 (448)
Q Consensus       164 K~l~~P~g--~G~l~vr~~~~  182 (448)
                      |++++|..  .|+++++++++
T Consensus       198 K~l~g~~d~~gG~vi~~~~~~  218 (385)
T PRK08574        198 KYIAGHNDVVGGVAVAWSGEF  218 (385)
T ss_pred             eeecCCCCceeEEEEECcHHH
Confidence            99999875  35466655544

>TIGR01140 L_thr_O3P_dcar L-threonine-O-3-phosphate decarboxylase

Probab=99.65  E-value=5.2e-14  Score=140.72  Aligned_cols=142  Identities=12%  Similarity=0.028  Sum_probs=101.5

Q ss_pred             cEEEeCcHHHHHHHHHHHHHHhcCCcccccCCCCCCCeEEEecCCCchHHHHHHHHhCCCCCcEEEEecCCCCCcCHHHH
Q psy14299          4 KPFLLPGGSISNMYSICLARYRLDPDTKRKGLSHLPPLCMFTSEDSHYSMLKAAHWLGIGMDNVIRVKTNERGQMICSFL   83 (448)
Q Consensus         4 ~g~~t~ggT~an~~al~~a~~~~~~~~~~~G~~~~~~~~Vl~~~~~H~s~~~~~~~~g~~~~~v~~v~~~~~g~id~e~L   83 (448)
                      ..++|+|+++++..+. .+..              ++ .|++....|.++...++..|+   +++.++       |++.+
T Consensus        66 ~i~~t~G~~~~i~~~~-~~l~--------------~g-~vl~~~p~y~~~~~~~~~~g~---~~~~~~-------d~~~l  119 (330)
T TIGR01140        66 SVLPVNGAQEAIYLLP-RLLA--------------PG-RVLVLAPTYSEYARAWRAAGH---EVVELP-------DLDRL  119 (330)
T ss_pred             hEEECCCHHHHHHHHH-HHhC--------------CC-eEEEeCCCcHHHHHHHHHcCC---EEEEeC-------CHHHH
Confidence            4678888888866543 3232              34 367777889899999988888   677776       88999


Q ss_pred             HHHHHHhhhcCCCcEEEEEeccCCccccccC---HHHHHHHHHHcCCEEEEecccccccccccchhhhhcCCCCccEEEE
Q psy14299         84 EQTIQTSLAEKKIPLFVNATAGTTVLGAFDP---LDEIATVCEKYDLWMHVDACWGGSLIFSEKYSFVLKGINRANSVSW  160 (448)
Q Consensus        84 e~~l~~~~~~~~~~~lVv~~~~~t~tG~~~~---l~~I~~ia~~~g~~l~VD~A~~~~~~~~~~~~~~~~~~~~aD~~~~  160 (448)
                      ++.+++       +++|++++++|++|.+.|   +++|+++|++||+++++|++|...... .......+ ...-++++.
T Consensus       120 ~~~~~~-------~~~v~i~~p~NPtG~~~~~~~~~~l~~~a~~~~~~ii~De~y~~~~~~-~~~~~~~~-~~~~~i~~~  190 (330)
T TIGR01140       120 PAALEE-------LDVLVLCNPNNPTGRLIPPETLLALAARLRARGGWLVVDEAFIDFTPD-ASLAPQAA-RFPGLVVLR  190 (330)
T ss_pred             Hhhccc-------CCEEEEeCCCCCCCCCCCHHHHHHHHHHhHhcCCEEEEECcccccCCc-cchhhHhc-cCCCEEEEE
Confidence            888732       568889999999999988   677788899999999999998754431 11111111 112458888


Q ss_pred             CCccccCCC-CceEEEEEecc
Q psy14299        161 NPHKMLGAP-LQCSILLIKEK  180 (448)
Q Consensus       161 s~hK~l~~P-~g~G~l~vr~~  180 (448)
                      +++|+++.| ..+|+++++++
T Consensus       191 S~SK~~g~~G~R~G~i~~~~~  211 (330)
T TIGR01140       191 SLTKFFGLAGLRLGFVVAHPA  211 (330)
T ss_pred             ecchhhcCchhhhhheeCCHH
Confidence            999999855 44688777543

This family contains pyridoxal phosphate-binding class II aminotransferases (see PFAM:PF00222) closely related to, yet distinct from, histidinol-phosphate aminotransferase (HisC). It is found in cobalamin biosynthesis operons in Salmonella typhimurium and Bacillus halodurans (each of which also has HisC) and has been shown to have L-threonine-O-3-phosphate decarboxylase activity in Salmonella. Although the gene symbol cobD was assigned in Salmonella, cobD in other contexts refers to a different cobalamin biosynthesis enzyme, modeled by pfam03186 and called cbiB in Salmonella.

>PRK05994 O-acetylhomoserine aminocarboxypropyltransferase; Validated

Probab=99.65  E-value=8.9e-14  Score=143.66  Aligned_cols=140  Identities=14%  Similarity=0.110  Sum_probs=110.5

Q ss_pred             cEEEeCcHHHHHHHHHHHHHHhcCCcccccCCCCCCCeEEEecCCCchHHHH----HHHHhCCCCCcEEEEecCCCCCcC
Q psy14299          4 KPFLLPGGSISNMYSICLARYRLDPDTKRKGLSHLPPLCMFTSEDSHYSMLK----AAHWLGIGMDNVIRVKTNERGQMI   79 (448)
Q Consensus         4 ~g~~t~ggT~an~~al~~a~~~~~~~~~~~G~~~~~~~~Vl~~~~~H~s~~~----~~~~~g~~~~~v~~v~~~~~g~id   79 (448)
                      .++++++|+.|+..++.+...              +++.|+++...|.....    .+...|+   .++.++.+     |
T Consensus        80 ~al~~~SG~~Ai~~al~all~--------------pGd~VIv~~~~y~~t~~~~~~~~~~~G~---~v~~vd~~-----d  137 (427)
T PRK05994         80 AALAVASGHAAQFLVFHTLLQ--------------PGDEFIAARKLYGGSINQFGHAFKSFGW---QVRWADAD-----D  137 (427)
T ss_pred             cEEEEcCHHHHHHHHHHHHhC--------------CCCEEEEecCcchhHHHHHHHHHHhcCc---EEEEECCC-----C
Confidence            478999999999988876543              56778888888876443    3455666   67777654     8


Q ss_pred             HHHHHHHHHHhhhcCCCcEEEEEeccCCccccccCHHHHHHHHHHcCCEEEEecccccccccccchhhhhcCCCCccEEE
Q psy14299         80 CSFLEQTIQTSLAEKKIPLFVNATAGTTVLGAFDPLDEIATVCEKYDLWMHVDACWGGSLIFSEKYSFVLKGINRANSVS  159 (448)
Q Consensus        80 ~e~Le~~l~~~~~~~~~~~lVv~~~~~t~tG~~~~l~~I~~ia~~~g~~l~VD~A~~~~~~~~~~~~~~~~~~~~aD~~~  159 (448)
                      ++++++++++      ++++|++++++|++|.+.|+++|.++||++|+++++|++++.+....+ .     . .++|+++
T Consensus       138 ~~~l~~ai~~------~tklV~vesp~NptG~v~dl~~I~~la~~~gi~livD~a~a~~~~~~p-l-----~-~gaDivv  204 (427)
T PRK05994        138 PASFERAITP------RTKAIFIESIANPGGTVTDIAAIAEVAHRAGLPLIVDNTLASPYLIRP-I-----E-HGADIVV  204 (427)
T ss_pred             HHHHHHhcCc------CCeEEEEECCCCCCCeecCHHHHHHHHHHcCCEEEEECCccccccCCc-c-----c-cCCcEEE
Confidence            8999998854      588999999999999999999999999999999999999986654211 1     1 1589999


Q ss_pred             ECCccccCCCCc-eEEEEEe
Q psy14299        160 WNPHKMLGAPLQ-CSILLIK  178 (448)
Q Consensus       160 ~s~hK~l~~P~g-~G~l~vr  178 (448)
                      .|+||++++|.+ .|.+++.
T Consensus       205 ~S~tK~lgg~~~~~gG~v~~  224 (427)
T PRK05994        205 HSLTKFLGGHGNSMGGIIVD  224 (427)
T ss_pred             EcCccccCCCCCcEEEEEEe
Confidence            999999998875 5555553

>PLN00143 tyrosine/nicotianamine aminotransferase; Provisional

Probab=99.64  E-value=1.4e-13  Score=141.61  Aligned_cols=151  Identities=11%  Similarity=0.041  Sum_probs=110.8

Q ss_pred             cEEEeCcHHHHHHHHHHHHHHhcCCcccccCCCCCCCeEEEecCCCchHHHHHHHHhCCCCCcEEEEecC--CCCCcCHH
Q psy14299          4 KPFLLPGGSISNMYSICLARYRLDPDTKRKGLSHLPPLCMFTSEDSHYSMLKAAHWLGIGMDNVIRVKTN--ERGQMICS   81 (448)
Q Consensus         4 ~g~~t~ggT~an~~al~~a~~~~~~~~~~~G~~~~~~~~Vl~~~~~H~s~~~~~~~~g~~~~~v~~v~~~--~~g~id~e   81 (448)
                      ..++|+|+++++.+++.+...              +++.|+++...+..+...++..|.   +++.++.+  .++.+|++
T Consensus        99 ~I~it~G~~~al~~~~~~l~~--------------~gd~v~v~~P~y~~~~~~~~~~g~---~~~~~~~~~~~~~~~d~~  161 (409)
T PLN00143         99 DVYLTLGCKHAAEIIIKVLAR--------------PEANILLPRPGFPDVETYAIFHHL---EIRHFDLLPEKGWEVDLD  161 (409)
T ss_pred             hEEEecChHHHHHHHHHHHcC--------------CCCEEEEcCCCCcCHHHHHHHcCC---EEEEEeccCCCCCcCCHH
Confidence            367899999998888776544              567788899999999999998888   78888874  34579999


Q ss_pred             HHHHHHHHhhhcCCCcEEEEEeccCCccccccC---HHHHHHHHHHcCCEEEEecccccccccccchhhhhcCCCCc--c
Q psy14299         82 FLEQTIQTSLAEKKIPLFVNATAGTTVLGAFDP---LDEIATVCEKYDLWMHVDACWGGSLIFSEKYSFVLKGINRA--N  156 (448)
Q Consensus        82 ~Le~~l~~~~~~~~~~~lVv~~~~~t~tG~~~~---l~~I~~ia~~~g~~l~VD~A~~~~~~~~~~~~~~~~~~~~a--D  156 (448)
                      +|++++++      +++.++++.++|+||.+.+   +++|.++|++|++++++|.+|............ ...+...  =
T Consensus       162 ~l~~~~~~------~~~~~~~~nP~NPTG~~~s~~~~~~l~~~a~~~~~~ii~De~Y~~l~~~~~~~~~-~~~~~~~~~v  234 (409)
T PLN00143        162 AVEAIADE------NTIAMVIINPGNPCGSVYSYEHLNKIAETARKLGILVIADEVYGHIVFGSKPFVP-MGLFASIVPV  234 (409)
T ss_pred             HHHHhccc------CCEEEEEECCCCCCCCccCHHHHHHHHHHHHHcCCeEEEEccccccccCCCCCcc-hhhhcccCcE
Confidence            99988754      4778889999999999877   777888999999999999998854431111000 0001111  1


Q ss_pred             EEEECCccccCCC-CceEEEEEe
Q psy14299        157 SVSWNPHKMLGAP-LQCSILLIK  178 (448)
Q Consensus       157 ~~~~s~hK~l~~P-~g~G~l~vr  178 (448)
                      +++.|+.|.++.| .-+|+++..
T Consensus       235 i~~~SfSK~f~~pGlRvG~~v~~  257 (409)
T PLN00143        235 ITLGSISKRWMIPGWGLGWLVTC  257 (409)
T ss_pred             EEEccchhhcCCCccceEEEEee
Confidence            5667889986655 447777664

>PLN02242 methionine gamma-lyase

Probab=99.64  E-value=7.7e-14  Score=143.62  Aligned_cols=145  Identities=8%  Similarity=-0.010  Sum_probs=108.0

Q ss_pred             cEEEeCcHHHHHHHHHHHHHHhcCCcccccCCCCCCCeEEEecCCCchHHHHHHH-----HhCCCCCcEEEEecCCCCCc
Q psy14299          4 KPFLLPGGSISNMYSICLARYRLDPDTKRKGLSHLPPLCMFTSEDSHYSMLKAAH-----WLGIGMDNVIRVKTNERGQM   78 (448)
Q Consensus         4 ~g~~t~ggT~an~~al~~a~~~~~~~~~~~G~~~~~~~~Vl~~~~~H~s~~~~~~-----~~g~~~~~v~~v~~~~~g~i   78 (448)
                      .+++++||++++..++.+..+              +++.|+++...+......+.     ..|+   +++.++.+     
T Consensus        93 ~~l~~~sG~~Ai~~al~al~~--------------~GD~Vl~~~~~Y~~~~~~~~~~~~~~~G~---~~~~~d~~-----  150 (418)
T PLN02242         93 AAYCTASGMSAISSVLLQLCS--------------SGGHVVASNTLYGGTHALLAHFLPRKCNI---TTTFVDIT-----  150 (418)
T ss_pred             eEEEEccHHHHHHHHHHHHhC--------------CCCEEEEcCCcHHHHHHHHHHhhhhccCc---eEEEcCCC-----
Confidence            457899999999998877654              56778888877666655442     3444   45555543     


Q ss_pred             CHHHHHHHHHHhhhcCCCcEEEEEeccCCccccccCHHHHHHHHHHcCCEEEEecccccccccccchhhhhcCCCCccEE
Q psy14299         79 ICSFLEQTIQTSLAEKKIPLFVNATAGTTVLGAFDPLDEIATVCEKYDLWMHVDACWGGSLIFSEKYSFVLKGINRANSV  158 (448)
Q Consensus        79 d~e~Le~~l~~~~~~~~~~~lVv~~~~~t~tG~~~~l~~I~~ia~~~g~~l~VD~A~~~~~~~~~~~~~~~~~~~~aD~~  158 (448)
                      |++++++++++     .++++|++++++|++|.+.|+++|+++||+||++++||.+|+....  +..     .+ ++|++
T Consensus       151 d~e~l~~~i~~-----~~tklV~lesp~NPtG~v~dl~~I~~la~~~gi~livDea~~~~~~--~~~-----~~-g~div  217 (418)
T PLN02242        151 DLEAVKKAVVP-----GKTKVLYFESISNPTLTVADIPELARIAHEKGVTVVVDNTFAPMVL--SPA-----RL-GADVV  217 (418)
T ss_pred             CHHHHHHhcCc-----CCCEEEEEecCCCCCCcccCHHHHHHHHHHhCCEEEEECCCCccCC--CHH-----Hc-CCcEE
Confidence            89999998854     1488999999999999999999999999999999999999964432  111     11 37999


Q ss_pred             EECCccccCCCCce--EEEEEeccchhh
Q psy14299        159 SWNPHKMLGAPLQC--SILLIKEKGLLH  184 (448)
Q Consensus       159 ~~s~hK~l~~P~g~--G~l~vr~~~~~~  184 (448)
                      +.|++|+++++...  |+++. ++++..
T Consensus       218 v~S~SK~l~g~g~~~gG~iv~-~~~li~  244 (418)
T PLN02242        218 VHSISKFISGGADIIAGAVCG-PAELVN  244 (418)
T ss_pred             EEeCccccCCCCCceEEEEEc-CHHHHH
Confidence            99999999988653  55554 444433

>TIGR03576 pyridox_MJ0158 pyridoxal phosphate enzyme, MJ0158 family

Probab=99.64  E-value=3.1e-14  Score=143.10  Aligned_cols=147  Identities=17%  Similarity=0.146  Sum_probs=100.9

Q ss_pred             cEEEeCcHHHHHHHHHHHHHHhcCCcccccCCCCCCCeEEEe---cCCCchHHHHHHHHhCCCCCcEEEEecCCCCCcCH
Q psy14299          4 KPFLLPGGSISNMYSICLARYRLDPDTKRKGLSHLPPLCMFT---SEDSHYSMLKAAHWLGIGMDNVIRVKTNERGQMIC   80 (448)
Q Consensus         4 ~g~~t~ggT~an~~al~~a~~~~~~~~~~~G~~~~~~~~Vl~---~~~~H~s~~~~~~~~g~~~~~v~~v~~~~~g~id~   80 (448)
                      ..++++||+++|..++.+...              +++.|++   +...|.++..++++.|.   ++..  .+     |+
T Consensus        73 ~ilv~~gg~~a~~~~~~al~~--------------~gd~Vli~~~d~p~~~s~~~~~~l~ga---~~~~--~~-----~l  128 (346)
T TIGR03576        73 KILVFNRTSSAILATILALEP--------------PGRKVVHYLPEKPAHPSIPRSCKLAGA---EYFE--SD-----EL  128 (346)
T ss_pred             eEEEECCHHHHHHHHHHHhCC--------------CCCEEEECCCCCCCchhHHHHHHHcCC---EEec--cC-----CH
Confidence            578999999999988877654              4556664   25799999999999887   4422  21     44


Q ss_pred             HHHHHHHHHhhhcCCCcEEEEEeccCCccccc---cCHHHHHHHHHHcCCEEEEecccccccccccchhhhhcCCCCccE
Q psy14299         81 SFLEQTIQTSLAEKKIPLFVNATAGTTVLGAF---DPLDEIATVCEKYDLWMHVDACWGGSLIFSEKYSFVLKGINRANS  157 (448)
Q Consensus        81 e~Le~~l~~~~~~~~~~~lVv~~~~~t~tG~~---~~l~~I~~ia~~~g~~l~VD~A~~~~~~~~~~~~~~~~~~~~aD~  157 (448)
                      ++++. .       .++++|+++. ++++|.+   .||++|+++|++||++++||.||+.+........... .. .+|+
T Consensus       129 ~~l~~-~-------~~~~lIiitg-~s~~G~v~~~~~L~~i~~la~~~~~~livDEAy~~~~~~~~~~~~~~-~~-~~di  197 (346)
T TIGR03576       129 SELKK-I-------DGTSLVVITG-STMDLKVVSEEDLKRVIKQAKSKEAIVLVDDASGARVRRLYGQPPAL-DL-GADL  197 (346)
T ss_pred             HHHhh-C-------cCceEEEEEC-CCCCCcccCHHHHHHHHHHHHHcCCEEEEECCccccccccCCCCCHH-Hc-CCcE
Confidence            54321 1       2366777754 6889988   7899999999999999999999998754211111111 11 3689


Q ss_pred             EEECCccccCCCCceEEEEEeccchhhhhc
Q psy14299        158 VSWNPHKMLGAPLQCSILLIKEKGLLHQAN  187 (448)
Q Consensus       158 ~~~s~hK~l~~P~g~G~l~vr~~~~~~~~~  187 (448)
                      ++.+++|++.++. .|+++. ++++.....
T Consensus       198 vv~s~SKalaG~r-~G~v~~-~~~li~~l~  225 (346)
T TIGR03576       198 VVTSTDKLMDGPR-GGLLAG-RKELVDKIK  225 (346)
T ss_pred             EEeccchhccccc-eEEEEe-CHHHHHHHH
Confidence            9999999886665 466655 444444443

Members of this archaeal protein family are pyridoxal phosphate enzymes of unknown function. Sequence similarity to SelA, a bacterial enzyme of selenocysteine biosynthesis, has led to some members being misannotated as functionally equivalent, but selenocysteine is made on tRNA in Archaea by a two-step process that does not involve a SelA homolog.

>PRK07337 aminotransferase; Validated

Probab=99.64  E-value=7.4e-14  Score=142.65  Aligned_cols=150  Identities=11%  Similarity=-0.017  Sum_probs=110.9

Q ss_pred             cEEEeCcHHHHHHHHHHHHHHhcCCcccccCCCCCCCeEEEecCCCchHHHHHHHHhCCCCCcEEEEecCC--CCCcCHH
Q psy14299          4 KPFLLPGGSISNMYSICLARYRLDPDTKRKGLSHLPPLCMFTSEDSHYSMLKAAHWLGIGMDNVIRVKTNE--RGQMICS   81 (448)
Q Consensus         4 ~g~~t~ggT~an~~al~~a~~~~~~~~~~~G~~~~~~~~Vl~~~~~H~s~~~~~~~~g~~~~~v~~v~~~~--~g~id~e   81 (448)
                      ..++|+|+++++.+++.+..+              +++.|+++..+|.++...++..|.   +++.+|.++  ++.+|++
T Consensus        92 ~i~~t~G~~~al~~~~~~l~~--------------~gd~Vlv~~p~y~~~~~~~~~~g~---~~~~~~~~~~~~~~~~~~  154 (388)
T PRK07337         92 RIVVTAGASAALLLACLALVE--------------RGDEVLMPDPSYPCNRHFVAAAEG---RPVLVPSGPAERFQLTAA  154 (388)
T ss_pred             hEEEecCcHHHHHHHHHHhcC--------------CCCEEEEeCCCchhhHHHHHHcCC---EEEEeecCCccCCcCCHH
Confidence            367999999998777665433              567899999999999988888887   788888864  4589999


Q ss_pred             HHHHHHHHhhhcCCCcEEEEEeccCCccccccC---HHHHHHHHHHcCCEEEEecccccccccccchhhhhcCCCCccEE
Q psy14299         82 FLEQTIQTSLAEKKIPLFVNATAGTTVLGAFDP---LDEIATVCEKYDLWMHVDACWGGSLIFSEKYSFVLKGINRANSV  158 (448)
Q Consensus        82 ~Le~~l~~~~~~~~~~~lVv~~~~~t~tG~~~~---l~~I~~ia~~~g~~l~VD~A~~~~~~~~~~~~~~~~~~~~aD~~  158 (448)
                      ++++.+.+      ++++|++++++|+||...+   +++|+++|+++|+++++|.++........  ......+ ..+++
T Consensus       155 ~l~~~~~~------~~~~v~l~~p~NPtG~~~~~~~~~~i~~~a~~~~~~ii~De~y~~~~~~~~--~~~~~~~-~~~vi  225 (388)
T PRK07337        155 DVEAAWGE------RTRGVLLASPSNPTGTSIAPDELRRIVEAVRARGGFTIVDEIYQGLSYDAA--PVSALSL-GDDVI  225 (388)
T ss_pred             HHHhhcCc------cceEEEEECCCCCCCcCcCHHHHHHHHHHHHHCCCEEEEeccccccccCCC--CcChhhc-cCCEE
Confidence            99998854      4788999999999998765   78889999999999999999875332111  0011111 12444


Q ss_pred             -EECCccccCCCC-ceEEEEEec
Q psy14299        159 -SWNPHKMLGAPL-QCSILLIKE  179 (448)
Q Consensus       159 -~~s~hK~l~~P~-g~G~l~vr~  179 (448)
                       +.|++|.++.|. -+|+++..+
T Consensus       226 ~~~S~SK~~~~~G~RiG~~~~~~  248 (388)
T PRK07337        226 TINSFSKYFNMTGWRLGWLVVPE  248 (388)
T ss_pred             EEEechhhcCCchhheeeeecCH
Confidence             458899887553 277776643

>PRK08636 aspartate aminotransferase; Provisional

Probab=99.64  E-value=1.6e-13  Score=141.05  Aligned_cols=156  Identities=11%  Similarity=0.051  Sum_probs=109.9

Q ss_pred             cEEEeCcHHHHHHHHHHHHHHhcCCcccccCCCCCCCeEEEecCCCchHHHHHHHHhCCCCCcEEEEecC--CCCCcCHH
Q psy14299          4 KPFLLPGGSISNMYSICLARYRLDPDTKRKGLSHLPPLCMFTSEDSHYSMLKAAHWLGIGMDNVIRVKTN--ERGQMICS   81 (448)
Q Consensus         4 ~g~~t~ggT~an~~al~~a~~~~~~~~~~~G~~~~~~~~Vl~~~~~H~s~~~~~~~~g~~~~~v~~v~~~--~~g~id~e   81 (448)
                      ..++|+|+++++.+++.+...              +++.|++++..+..+...++..|.   +++.+|.+  +++.+|++
T Consensus        97 ~I~it~G~~~al~~~~~~l~~--------------~gd~Vlv~~P~y~~~~~~~~~~g~---~~~~v~~~~~~~~~~d~~  159 (403)
T PRK08636         97 EVVATMGSKEGYVHLVQAITN--------------PGDVAIVPDPAYPIHSQAFILAGG---NVHKMPLEYNEDFELDED  159 (403)
T ss_pred             eEEECCChHHHHHHHHHHhCC--------------CCCEEEEcCCCCcchHHHHHhcCC---EEEEEeccccccCccChh
Confidence            378999999998887766544              567899999999999999999898   78888874  34689988


Q ss_pred             HHHHHHHHhhhc-CCCcEEEEEeccCCccccccC---HHHHHHHHHHcCCEEEEecccccccccccchhhhhcCCCC-cc
Q psy14299         82 FLEQTIQTSLAE-KKIPLFVNATAGTTVLGAFDP---LDEIATVCEKYDLWMHVDACWGGSLIFSEKYSFVLKGINR-AN  156 (448)
Q Consensus        82 ~Le~~l~~~~~~-~~~~~lVv~~~~~t~tG~~~~---l~~I~~ia~~~g~~l~VD~A~~~~~~~~~~~~~~~~~~~~-aD  156 (448)
                      .+...+++..+. ..++++++++.++|+||.+.+   +++|.++|++|++++++|.+|+-........ ..+..+.. .|
T Consensus       160 ~l~~~l~~~~~~~~~~~~~i~~~~P~NPTG~~~s~~~~~~l~~~a~~~~~~II~De~Y~~l~~~~~~~-~~~~~~~~~~~  238 (403)
T PRK08636        160 QFFENLEKALRESSPKPKYVVVNFPHNPTTATVEKSFYERLVALAKKERFYIISDIAYADITFDGYKT-PSILEVEGAKD  238 (403)
T ss_pred             hhhhHHHHHHhhccCCceEEEEeCCCCCCCccCCHHHHHHHHHHHHHcCcEEEEeccchhhccCCCCC-CChhcCCCccc
Confidence            765555432222 246889999999999998866   5778889999999999999988544311000 11111111 12


Q ss_pred             --EEEECCccccCCC-CceEEEEE
Q psy14299        157 --SVSWNPHKMLGAP-LQCSILLI  177 (448)
Q Consensus       157 --~~~~s~hK~l~~P-~g~G~l~v  177 (448)
                        +.+.|+.|.++.| .-+|+++.
T Consensus       239 ~~i~~~S~SK~~~~~GlRiG~iv~  262 (403)
T PRK08636        239 VAVESYTLSKSYNMAGWRVGFVVG  262 (403)
T ss_pred             cEEEEEecccccCCccceeeeeeC
Confidence              3456899998654 44566544

>PRK08153 histidinol-phosphate aminotransferase; Provisional

Probab=99.64  E-value=1.4e-13  Score=139.73  Aligned_cols=149  Identities=11%  Similarity=-0.008  Sum_probs=105.4

Q ss_pred             cEEEeCcHHHHHHHHHHHHHHhcCCcccccCCCCCCCeEEEecCCCchHHHHHHHHhCCCCCcEEEEecCCCCCcCHHHH
Q psy14299          4 KPFLLPGGSISNMYSICLARYRLDPDTKRKGLSHLPPLCMFTSEDSHYSMLKAAHWLGIGMDNVIRVKTNERGQMICSFL   83 (448)
Q Consensus         4 ~g~~t~ggT~an~~al~~a~~~~~~~~~~~G~~~~~~~~Vl~~~~~H~s~~~~~~~~g~~~~~v~~v~~~~~g~id~e~L   83 (448)
                      ..++|+|+++++..++.+..+              +++.|+++...|+.+...++..|.   ++..+|.+.+ .+|++++
T Consensus        86 ~I~it~G~~~~l~~~~~~~~~--------------~gd~vlv~~p~y~~~~~~~~~~g~---~~~~vp~~~~-~~~~~~l  147 (369)
T PRK08153         86 NIMVGEGIDGLLGLIVRLYVE--------------PGDPVVTSLGAYPTFNYHVAGFGG---RLVTVPYRDD-REDLDAL  147 (369)
T ss_pred             HEEEcCCHHHHHHHHHHHhcC--------------CCCEEEECCCcchHHHHHHHHcCC---eEEEeeCCCC-CCCHHHH
Confidence            467888888887666655443              667899999999999888888887   7888998655 4788888


Q ss_pred             HHHHHHhhhcCCCcEEEEEeccCCccccccCHHHHHHHHHHc--CCEEEEecccccccccccchhhhhcCCCCccEEEEC
Q psy14299         84 EQTIQTSLAEKKIPLFVNATAGTTVLGAFDPLDEIATVCEKY--DLWMHVDACWGGSLIFSEKYSFVLKGINRANSVSWN  161 (448)
Q Consensus        84 e~~l~~~~~~~~~~~lVv~~~~~t~tG~~~~l~~I~~ia~~~--g~~l~VD~A~~~~~~~~~~~~~~~~~~~~aD~~~~s  161 (448)
                      ++.+.+     .++++++++.++|+||.+.+.+++.++++.+  ++++++|.+|+..... .... .+.....--++..+
T Consensus       148 ~~~~~~-----~~~~~i~l~~P~NPtG~~~~~~~l~~l~~~~~~~~~lI~DE~y~~~~~~-~~~~-~~~~~~~~~i~~~S  220 (369)
T PRK08153        148 LDAARR-----ENAPLVYLANPDNPMGSWHPAADIVAFIEALPETTLLVLDEAYCETAPA-GAAP-PIDTDDPNVIRMRT  220 (369)
T ss_pred             HHHhcc-----cCCcEEEEeCCCCCCCCCCCHHHHHHHHHhCCCCcEEEEeCchhhhcCc-ccch-hhhhcCCCEEEEec
Confidence            877653     2477888899999999999988888777654  8999999998743321 1000 11111111256678


Q ss_pred             CccccCCCC-ceEEEEE
Q psy14299        162 PHKMLGAPL-QCSILLI  177 (448)
Q Consensus       162 ~hK~l~~P~-g~G~l~v  177 (448)
                      +.|.++.|. -+|+++.
T Consensus       221 fSK~~g~~GlRiG~~v~  237 (369)
T PRK08153        221 FSKAYGLAGARVGYAIG  237 (369)
T ss_pred             chHhccCcchheeeeec
Confidence            899987553 3466655

>PRK08249 cystathionine gamma-synthase; Provisional

Probab=99.64  E-value=1.1e-13  Score=141.71  Aligned_cols=145  Identities=14%  Similarity=0.072  Sum_probs=108.4

Q ss_pred             cEEEeCcHHHHHHHHHHHHHHhcCCcccccCCCCCCCeEEEecCCCchHHHHH----HHHhCCCCCcEEEEecCCCCCcC
Q psy14299          4 KPFLLPGGSISNMYSICLARYRLDPDTKRKGLSHLPPLCMFTSEDSHYSMLKA----AHWLGIGMDNVIRVKTNERGQMI   79 (448)
Q Consensus         4 ~g~~t~ggT~an~~al~~a~~~~~~~~~~~G~~~~~~~~Vl~~~~~H~s~~~~----~~~~g~~~~~v~~v~~~~~g~id   79 (448)
                      ..+++++|+.++..++.+...              +++.|+++...|.+....    +...|+   ++..++.     .|
T Consensus        81 ~~i~~ssG~~Ai~~~l~all~--------------~GD~Vi~~~~~y~~~~~~~~~~~~~~Gi---~v~~vd~-----~d  138 (398)
T PRK08249         81 AATAFSTGMAAISNTLYTFLK--------------PGDRVVSIKDTYGGTNKIFTEFLPRMGV---DVTLCET-----GD  138 (398)
T ss_pred             eEEEeCChHHHHHHHHHHhcC--------------CCCEEEEcCCchHHHHHHHHHHHhhCCe---EEEEcCC-----CC
Confidence            468889999888877765433              567899999999875543    334455   5555543     58


Q ss_pred             HHHHHHHHHHhhhcCCCcEEEEEeccCCccccccCHHHHHHHHHHcCCEEEEecccccccccccchhhhhcCCCCccEEE
Q psy14299         80 CSFLEQTIQTSLAEKKIPLFVNATAGTTVLGAFDPLDEIATVCEKYDLWMHVDACWGGSLIFSEKYSFVLKGINRANSVS  159 (448)
Q Consensus        80 ~e~Le~~l~~~~~~~~~~~lVv~~~~~t~tG~~~~l~~I~~ia~~~g~~l~VD~A~~~~~~~~~~~~~~~~~~~~aD~~~  159 (448)
                      ++++++++++      ++++|.+..++|++|.+.|+++|.++||+||++++||++++......+     . . ..+|+++
T Consensus       139 ~e~l~~~i~~------~tklV~ie~p~NPtg~v~dl~~I~~la~~~gi~livD~t~a~~~~~~~-----l-~-~~~Divv  205 (398)
T PRK08249        139 HEQIEAEIAK------GCDLLYLETPTNPTLKIVDIERLAAAAKKVGALVVVDNTFATPINQNP-----L-A-LGADLVI  205 (398)
T ss_pred             HHHHHHhcCC------CCeEEEEECCCCCCCccCCHHHHHHHHHHcCCEEEEECCcCccccCCc-----h-h-hCCCEEe
Confidence            9999999854      478999999999999999999999999999999999999986543211     1 1 1479999


Q ss_pred             ECCccccCCCCc-eEEEEEeccchh
Q psy14299        160 WNPHKMLGAPLQ-CSILLIKEKGLL  183 (448)
Q Consensus       160 ~s~hK~l~~P~g-~G~l~vr~~~~~  183 (448)
                      .|++|+++++.. .|.+++.++++.
T Consensus       206 ~S~sK~l~g~~~~~gG~vv~~~~l~  230 (398)
T PRK08249        206 HSATKFLSGHADALGGVVCGSKELM  230 (398)
T ss_pred             ccCceecCCCCCceEEEEECCHHHH
Confidence            999999998763 334445454443

>PRK06107 aspartate aminotransferase; Provisional

Probab=99.63  E-value=1.1e-13  Score=142.14  Aligned_cols=151  Identities=11%  Similarity=-0.062  Sum_probs=103.9

Q ss_pred             cEEEeCcHHHHHHHHHHHHHHhcCCcccccCCCCCCCeEEEecCCCchHHHHHHHHhCCCCCcEEEEecCC--CCCcCHH
Q psy14299          4 KPFLLPGGSISNMYSICLARYRLDPDTKRKGLSHLPPLCMFTSEDSHYSMLKAAHWLGIGMDNVIRVKTNE--RGQMICS   81 (448)
Q Consensus         4 ~g~~t~ggT~an~~al~~a~~~~~~~~~~~G~~~~~~~~Vl~~~~~H~s~~~~~~~~g~~~~~v~~v~~~~--~g~id~e   81 (448)
                      ..++|+|+++++..++.+...              +++.|++++..+..........+.   .++.++.+.  ++.+|++
T Consensus        95 ~i~~t~G~~~al~~~~~~~~~--------------~gd~vl~~~p~y~~y~~~~~~~~~---~~~~v~~~~~~~~~~~~~  157 (402)
T PRK06107         95 EITVGGGAKQAIFLALMATLE--------------AGDEVIIPAPYWVSYPDMVLANDG---TPVIVACPEEQGFKLTPE  157 (402)
T ss_pred             hEEEeCCHHHHHHHHHHHhcC--------------CCCEEEEecCCCcCHHHHHHHcCC---EEEEecCCcccCCCCCHH
Confidence            378999999998887765432              567788888877777776666665   566777653  3578999


Q ss_pred             HHHHHHHHhhhcCCCcEEEEEeccCCccccccC---HHHHHHHHHHc-CCEEEEecccccccccc---cchhhhhcCCCC
Q psy14299         82 FLEQTIQTSLAEKKIPLFVNATAGTTVLGAFDP---LDEIATVCEKY-DLWMHVDACWGGSLIFS---EKYSFVLKGINR  154 (448)
Q Consensus        82 ~Le~~l~~~~~~~~~~~lVv~~~~~t~tG~~~~---l~~I~~ia~~~-g~~l~VD~A~~~~~~~~---~~~~~~~~~~~~  154 (448)
                      ++++.+.+      ++++|++++++|+||...+   +++|+++|++| |+++++|.+|+-..+..   +.......+...
T Consensus       158 ~l~~~~~~------~~~~v~l~~p~NPtG~~~s~~~~~~l~~~a~~~~~~~iI~De~y~~l~~~~~~~~~~~~~~~~~~~  231 (402)
T PRK06107        158 ALEAAITP------RTRWLILNAPSNPTGAVYSRAELRALADVLLRHPHVLVLTDDIYDHIRFDDEPTPHLLAAAPELRD  231 (402)
T ss_pred             HHHhhcCc------CceEEEEECCCCCCCcCcCHHHHHHHHHHHHHcCCeEEEEehhccccccCCCCCCCHHHhCcCccC
Confidence            99998853      4788999999999998765   67778889998 99999999987432211   111111111111


Q ss_pred             ccEEEECCccccCCCCc-eEEEEE
Q psy14299        155 ANSVSWNPHKMLGAPLQ-CSILLI  177 (448)
Q Consensus       155 aD~~~~s~hK~l~~P~g-~G~l~v  177 (448)
                      --++..|++|.++.|.- +|+++.
T Consensus       232 ~vi~~~S~SK~~~~pGlRiG~~~~  255 (402)
T PRK06107        232 RVLVTNGVSKTYAMTGWRIGYAAG  255 (402)
T ss_pred             CEEEEeccchhhcCcccceeeeec
Confidence            22555677999865532 576655

>PF01212 Beta_elim_lyase: Beta-eliminating lyase; InterPro: IPR001597 This domain is found in many tryptophanases (tryptophan indole-lyase, TNase), tyrosine phenol-lyases (TPL) and threonine aldolases

Probab=99.63  E-value=3.2e-15  Score=146.13  Aligned_cols=158  Identities=19%  Similarity=0.279  Sum_probs=114.9

Q ss_pred             cEEEeCcHHHHHHHHHHHHHHhcCCcccccCCCCCCCeEEEecCCCchHHHHHHH---HhCCCCCcEEEEecCCCCCcCH
Q psy14299          4 KPFLLPGGSISNMYSICLARYRLDPDTKRKGLSHLPPLCMFTSEDSHYSMLKAAH---WLGIGMDNVIRVKTNERGQMIC   80 (448)
Q Consensus         4 ~g~~t~ggT~an~~al~~a~~~~~~~~~~~G~~~~~~~~Vl~~~~~H~s~~~~~~---~~g~~~~~v~~v~~~~~g~id~   80 (448)
                      .++|+++||++|.+++.+...              |+..|++...+|..+.+...   +.|.   +++.++.+++|.+|+
T Consensus        46 ~a~f~~sGT~An~~al~~~~~--------------~~~~vi~~~~aHi~~~E~ga~~~~~G~---~~~~l~~~~~G~l~~  108 (290)
T PF01212_consen   46 AALFVPSGTMANQLALRAHLR--------------PGESVICADTAHIHFDETGAIEELSGA---KLIPLPSDDDGKLTP  108 (290)
T ss_dssp             EEEEESSHHHHHHHHHHHHHH--------------TTEEEEEETTEHHHHSSTTHHHHHTTC---EEEEEBECTGTBB-H
T ss_pred             EEEEeCCCChHHHHHHHHHHh--------------cCCceeccccceeeeeccchhhHhcCc---EEEECCCcccCCCCH
Confidence            357999999999999998885              56789999999998775443   4566   799999876699999


Q ss_pred             HHHHHHHHHhhhcCCCcEEEEEeccCCcc-ccc---cCHHHHHHHHHHcCCEEEEeccccccccccc--chhhhhcCCCC
Q psy14299         81 SFLEQTIQTSLAEKKIPLFVNATAGTTVL-GAF---DPLDEIATVCEKYDLWMHVDACWGGSLIFSE--KYSFVLKGINR  154 (448)
Q Consensus        81 e~Le~~l~~~~~~~~~~~lVv~~~~~t~t-G~~---~~l~~I~~ia~~~g~~l~VD~A~~~~~~~~~--~~~~~~~~~~~  154 (448)
                      ++|++.++.......+|++|.++.+++.. |.+   +.|++|+++||+||+++|+|||.-+......  ......   ..
T Consensus       109 ~~l~~~~~~~~~h~~~~~~v~le~t~~~~GG~~~s~~el~ai~~~a~~~gl~lhmDGARl~~a~~~~~~~~~e~~---~~  185 (290)
T PF01212_consen  109 EDLEAAIEEHGAHHPQPAVVSLENTTELAGGTVYSLEELRAISELAREHGLPLHMDGARLANAAAALGVSLAEIA---AG  185 (290)
T ss_dssp             HHHHHHHHHHTGTSGGEEEEEEESSBTTTTSB---HHHHHHHHHHHHHHT-EEEEEETTHHHHHCHHHHHHHHHH---TT
T ss_pred             HHHHHHhhhccccCCCccEEEEEecCcCCCCeeCCHHHHHHHHHHHHhCceEEEEehhhHHHhhhcccccHHHHh---hh
Confidence            99999998754433467778888877753 654   5678889999999999999999766554211  111222   36


Q ss_pred             ccEEEECCccccCCCCceEEEEEeccchh
Q psy14299        155 ANSVSWNPHKMLGAPLQCSILLIKEKGLL  183 (448)
Q Consensus       155 aD~~~~s~hK~l~~P~g~G~l~vr~~~~~  183 (448)
                      +|++++++.|.+++|.|.-+  +-+++++
T Consensus       186 ~D~v~~~~tK~~g~~~Gavl--~~~~~~i  212 (290)
T PF01212_consen  186 ADSVSFGGTKNGGAPGGAVL--AGNKEFI  212 (290)
T ss_dssp             SSEEEEETTSTT-SSSEEEE--EESHHHH
T ss_pred             CCEEEEEEEcccccccceEE--EechHHH
Confidence            89999999999998864333  3344433

It is involved in the degradation of amino acids. The glycine cleavage system is composed of four proteins: P, T, L and H. In Bacillus subtilis, the P 'protein' is an heterodimer of two subunits. The glycine cleavage system catalyses the degradation of glycine. The P protein binds the alpha-amino group of glycine through its pyridoxal phosphate cofactor; CO(2) is released and the remaining methylamine moiety is then transferred to the lipoamide cofactor of the H protein; GO: 0016829 lyase activity, 0006520 cellular amino acid metabolic process; PDB: 3PJ0_C 2C44_C 2V0Y_A 2OQX_A 2V1P_A 1AX4_B 3LWS_A 1C7G_A 1V72_A 2YHK_B ....

>PRK07908 hypothetical protein; Provisional

Probab=99.63  E-value=6.9e-14  Score=140.86  Aligned_cols=147  Identities=16%  Similarity=0.080  Sum_probs=100.7

Q ss_pred             cEEEeCcHHHHHHHHHHHHHHhcCCcccccCCCCCCCeEEEecCCCchHHHHHHHHhCCCCCcEEEEecCCCCCcCHHHH
Q psy14299          4 KPFLLPGGSISNMYSICLARYRLDPDTKRKGLSHLPPLCMFTSEDSHYSMLKAAHWLGIGMDNVIRVKTNERGQMICSFL   83 (448)
Q Consensus         4 ~g~~t~ggT~an~~al~~a~~~~~~~~~~~G~~~~~~~~Vl~~~~~H~s~~~~~~~~g~~~~~v~~v~~~~~g~id~e~L   83 (448)
                      ..++|+|+++++.+++.  ..              ++.+ ++...+.......++..|.   +++.+|.++++.+|++.+
T Consensus        77 ~I~it~Ga~~al~~~~~--l~--------------~~~v-iv~~P~y~~~~~~~~~~G~---~i~~v~~~~~~~~d~~~l  136 (349)
T PRK07908         77 EVLLLAGAAEGFALLAR--LR--------------PRRA-AVVHPSFTEPEAALRAAGI---PVHRVVLDPPFRLDPAAV  136 (349)
T ss_pred             hEEECCCHHHHHHHHHh--cC--------------CCeE-EEeCCCChHHHHHHHHcCC---EEEeeccCcccCcChhHh
Confidence            46899999999876654  12              3333 3455666667777888888   788999887788888854


Q ss_pred             HHHHHHhhhcCCCcEEEEEeccCCccccccCHHHHHHHHHHcCCEEEEecccccccccccchhhhhcCCCCccEEEE-CC
Q psy14299         84 EQTIQTSLAEKKIPLFVNATAGTTVLGAFDPLDEIATVCEKYDLWMHVDACWGGSLIFSEKYSFVLKGINRANSVSW-NP  162 (448)
Q Consensus        84 e~~l~~~~~~~~~~~lVv~~~~~t~tG~~~~l~~I~~ia~~~g~~l~VD~A~~~~~~~~~~~~~~~~~~~~aD~~~~-s~  162 (448)
                      +    +      +++++++++++|+||.+.|.++|.++|+ ++.++++|++|+-... ..  ...+.....-+++++ |+
T Consensus       137 ~----~------~~~~i~l~np~NPTG~~~~~~~l~~l~~-~~~~iIvDe~y~~~~~-~~--~~~l~~~~~~~~i~i~S~  202 (349)
T PRK07908        137 P----D------DADLVVIGNPTNPTSVLHPAEQLLALRR-PGRILVVDEAFADAVP-GE--PESLAGDDLPGVLVLRSL  202 (349)
T ss_pred             c----c------CCCEEEEcCCCCCCCCCcCHHHHHHHHh-cCCEEEEECcchhhcc-CC--ccccccccCCCEEEEeec
Confidence            2    1      4678999999999999999999999996 5889999999874321 11  111111111245555 89


Q ss_pred             ccccCCC-CceEEEEEeccchhhh
Q psy14299        163 HKMLGAP-LQCSILLIKEKGLLHQ  185 (448)
Q Consensus       163 hK~l~~P-~g~G~l~vr~~~~~~~  185 (448)
                      +|.++.| .-+|+++..+ +++..
T Consensus       203 SK~~~l~GlRiG~~~~~~-~~~~~  225 (349)
T PRK07908        203 TKTWSLAGLRVGYALGAP-DVLAR  225 (349)
T ss_pred             ccccCCccceeeeeecCH-HHHHH
Confidence            9987633 4478888644 44433

>PF02347 GDC-P: Glycine cleavage system P-protein; InterPro: IPR020580 This family consists of glycine cleavage system P-proteins (1

Probab=99.63  E-value=1.4e-14  Score=146.57  Aligned_cols=269  Identities=14%  Similarity=0.162  Sum_probs=149.0

Q ss_pred             eEEEecCCCchHHHHHHHHh-CCCCCcEEEEecCCCCCcCHHHHHHHHHHhhhcCCCcEEEEEeccCCccccccCHHHHH
Q psy14299         41 LCMFTSEDSHYSMLKAAHWL-GIGMDNVIRVKTNERGQMICSFLEQTIQTSLAEKKIPLFVNATAGTTVLGAFDPLDEIA  119 (448)
Q Consensus        41 ~~Vl~~~~~H~s~~~~~~~~-g~~~~~v~~v~~~~~g~id~e~Le~~l~~~~~~~~~~~lVv~~~~~t~tG~~~~l~~I~  119 (448)
                      ..|+++...|+.....++-. .....+++.++.++++..|        +      ..+..|+++.|++ .|.+.|+++|+
T Consensus       155 ~~vlv~~~~hP~~~~v~~t~a~~~g~~iv~~~~~~~~~~d--------~------~~~a~v~vq~Pn~-~G~~ed~~~i~  219 (429)
T PF02347_consen  155 NKVLVPESLHPQTRAVLRTYAAPLGIEIVEVPLDEDGTTD--------D------DDTAAVMVQNPNT-FGVFEDIKEIA  219 (429)
T ss_dssp             -EEEEETTS-CHHHHHHHHHCCHCCEEEEEE-BBTTCSB---------S------TTEEEEEEESS-T-TSB--THHHHH
T ss_pred             cEEEEcCCcChhhHHHHHHhhhhCCeEEEEecccccCCcc--------c------cCeEEEEeecCCC-CceEeeHHHHH
Confidence            46899999999988766532 1112278889988888777        2      3577899999887 99999999999


Q ss_pred             HHHHHcCCEEEEecccccccccccchhhhhcCCCCccEEEECCccccCCCC-----ceEEEEEeccchhhhhccCCcccc
Q psy14299        120 TVCEKYDLWMHVDACWGGSLIFSEKYSFVLKGINRANSVSWNPHKMLGAPL-----QCSILLIKEKGLLHQANATAATYL  194 (448)
Q Consensus       120 ~ia~~~g~~l~VD~A~~~~~~~~~~~~~~~~~~~~aD~~~~s~hK~l~~P~-----g~G~l~vr~~~~~~~~~~~~~~y~  194 (448)
                      +++|++|+.+++ ++--........ +    +--++|++ ++.||.|+.|.     ++|++.++++ +.+    ..|+-+
T Consensus       220 ~~~h~~gal~~~-~ad~~aL~~l~~-P----ge~GADI~-vg~~Q~fg~p~~~GGP~~G~~a~~~~-l~r----~lPGRi  287 (429)
T PF02347_consen  220 DIAHAAGALVIV-GADPNALGGLKS-P----GEYGADIV-VGEHQTFGIPMGFGGPGAGFFAVRED-LVR----QLPGRI  287 (429)
T ss_dssp             HHHHHTT-EEEE-CGGCCGCCTC---G----GGGT-SEE-EECCTTTT---CCC-S--EEEEE-GG-GGG----GS-S-E
T ss_pred             HHHHHcCCEEEE-ecCHHHHhCcCC-h----hhcCccEE-eeCCCCCcccCCCCCCCeeeEEEhhh-hhh----hCCCce
Confidence            999999999988 653322221110 1    11158999 55588777664     4667888775 322    233333


Q ss_pred             cccCcccccccCCCCCcccCCCCchhHHHHHHHHHhChHHHHHHHHHhhhhccCCCccchhhhhhhhhhhhhhhhhhhhh
Q psy14299        195 FQQDKFYDVSFDTGDKSVQCGRKVDAFKLWLMWKARGNLGFRHFVDNAVDCSRGSMTFSTLLCFDLQGLLHQANATAATY  274 (448)
Q Consensus       195 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~g~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  274 (448)
                      ...+....+.   ..+.+...                      .=++++++.|+.|+||+             |++    
T Consensus       288 VG~t~D~~G~---~~~~ltLq----------------------tREQHIrReKAtSNIct-------------nqa----  325 (429)
T PF02347_consen  288 VGQTKDADGK---RAFVLTLQ----------------------TREQHIRREKATSNICT-------------NQA----  325 (429)
T ss_dssp             EEEEEBCCCS---CCEEEE-G----------------------GGTCHHHGCCSTT---S-------------S-H----
T ss_pred             eccccccccc---ceeeeccc----------------------cccccccccchhhhhhh-------------hHH----
Confidence            3211100000   01111000                      11356777888888887             333    


Q ss_pred             hhccccccccccCCCCCccccccchhhHHHHHHHHHhcCccHHHHHHHHHHHHHHHHHHhhcCCCeEEeccCCceeeEEE
Q psy14299        275 LFQQDKFYDVSFDTGDKSVQCGRKVDAFKLWLMWKARGNLGFRHFVDNAVDCSRYFLSQISQRPGFRLVIPEFQCTNICF  354 (448)
Q Consensus       275 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~~l~~~~~~~L~~~pg~~l~~~~~~~~~v~f  354 (448)
                                              ..++..+..+.+.|.+|++++.++...+++|+.++|+++.++.+  ..+.+..+++
T Consensus       326 ------------------------L~A~~a~~Yl~~~G~~GL~~iA~~~~~~A~yl~~~L~~~~~~~~--~~~~f~e~v~  379 (429)
T PF02347_consen  326 ------------------------LLALAAAIYLAYLGPEGLREIAERIHLNAHYLAERLKKIYGLPF--DNPFFFEFVV  379 (429)
T ss_dssp             ------------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCTTBECS--SSSSBSSEEE
T ss_pred             ------------------------HHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHHHhcCccc--CCCCceeeee
Confidence                                    22677788999999999999999999999999999999844443  3334444443


Q ss_pred             EeeccCCCccccchhhhhhhhhhhHHHHHHHHhCCcEEEEeeecCCcccccEEEEEecCCCCCCHHHHHHHHHHH
Q psy14299        355 WFIPVSLRDKVEDETWWSTLSKVAPRIKEKLVLGGTLMIGYQPLQHRNLHNFFRLVTTCHPASSRQDMDYAIDQI  429 (448)
Q Consensus       355 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~L~~~g~~~~~~~~~~g~~~~~~lRis~~~~~~~t~edid~l~~al  429 (448)
                      ...+.  .              ...++.++....|   +... ....   +.+-+|+  ...+|+||||+|++++
T Consensus       380 ~~~~~--~--------------~~~~l~~~~~~~g---l~~~-~~~~---~~~li~~--TE~~t~edid~lv~~f  429 (429)
T PF02347_consen  380 VFSKD--K--------------EVEELLKRGIEGG---LNLR-YPDD---GALLICV--TETRTKEDIDRLVEAF  429 (429)
T ss_dssp             EESS---H--------------HHHHHHHTT-------EEEG-GG-S---SEEEEE----TT--HHHHHHHHH--
T ss_pred             ecCCc--H--------------HHHHHHHHHHhcC---CCcc-ccCC---CeEEEEc--cCCCCHHHHHHHHhcC
Confidence            32110  0              0113444444445   2221 2222   5889999  5899999999999875

4.4.2 from EC) from bacterial, mammalian and plant sources. The P protein is part of the glycine decarboxylase multienzyme complex (2.1.2.10 from EC (GDC) also annotated as glycine cleavage system or glycine synthase. The P protein binds the alpha-amino group of glycine through its pyridoxal phosphate cofactor, carbon dioxide is released and the remaining methylamin moiety is then transferred to the lipoamide cofactor of the H protein. GDC consists of four proteins P, H, L and T []. The reaction catalysed by this protein is: Glycine + lipoylprotein = S-aminomethyldihydrolipoylprotein + CO2 ; GO: 0004375 glycine dehydrogenase (decarboxylating) activity, 0055114 oxidation-reduction process; PDB: 1WYV_A 1WYT_C 1WYU_A.

>PRK07505 hypothetical protein; Provisional

Probab=99.63  E-value=2e-13  Score=140.21  Aligned_cols=159  Identities=18%  Similarity=0.203  Sum_probs=103.4

Q ss_pred             cEEEeCcHHHHHHHHHHHHHHhcCCcccccCCCCCCCeEEEecCCCchHHHHHHHHhCCCCCcEEEEecCCCCCcCHHHH
Q psy14299          4 KPFLLPGGSISNMYSICLARYRLDPDTKRKGLSHLPPLCMFTSEDSHYSMLKAAHWLGIGMDNVIRVKTNERGQMICSFL   83 (448)
Q Consensus         4 ~g~~t~ggT~an~~al~~a~~~~~~~~~~~G~~~~~~~~Vl~~~~~H~s~~~~~~~~g~~~~~v~~v~~~~~g~id~e~L   83 (448)
                      ..++.++|+++|..++..++....        +.....+|+.+...|.|+.........+ ..++.+|.+     |++++
T Consensus       107 ~~~~~~sG~~a~~~ai~~~~~~~~--------~~~~~~vi~~~~~~H~s~~~~~~~~~~~-~~v~~~~~~-----d~~~l  172 (402)
T PRK07505        107 SVLTFTSCSAAHLGILPLLASGHL--------TGGVPPHMVFDKNAHASLNILKGICADE-TEVETIDHN-----DLDAL  172 (402)
T ss_pred             CEEEECChHHHHHHHHHHHHhccc--------CCCCCCEEEEchhhhHhHHhhhhhhhcC-CeEEEeCCC-----CHHHH
Confidence            567788899999888876554211        0013446777889999875432222111 157777764     89999


Q ss_pred             HHHHHHhhhcCCCcEEEEEeccCCccccccCHHHHHHHHHHcCCEEEEecccccccc-cc-cchh-hhhcC-CCCccEEE
Q psy14299         84 EQTIQTSLAEKKIPLFVNATAGTTVLGAFDPLDEIATVCEKYDLWMHVDACWGGSLI-FS-EKYS-FVLKG-INRANSVS  159 (448)
Q Consensus        84 e~~l~~~~~~~~~~~lVv~~~~~t~tG~~~~l~~I~~ia~~~g~~l~VD~A~~~~~~-~~-~~~~-~~~~~-~~~aD~~~  159 (448)
                      ++++++      ++++++++.+.+++|.+.|+++|.++|++||+++++|++|+.+.+ .. .... ..... .....+++
T Consensus       173 ~~~~~~------~~~~~vl~~p~~~~G~~~~~~~i~~l~~~~~~~li~DEa~~~~~~g~~g~~~~~~~~~~~~~d~~i~~  246 (402)
T PRK07505        173 EDICKT------NKTVAYVADGVYSMGGIAPVKELLRLQEKYGLFLYIDDAHGLSIYGKNGEGYVRSELDYRLNERTIIA  246 (402)
T ss_pred             HHHHhc------CCCEEEEEecccccCCcCCHHHHHHHHHHcCCEEEEECcccccCcCCCCCchHHHHcCCCCCCCeEEE
Confidence            998854      356888889999999999999999999999999999999864221 11 0001 01111 12234666


Q ss_pred             ECCccccCCCCceEEEEEeccchhh
Q psy14299        160 WNPHKMLGAPLQCSILLIKEKGLLH  184 (448)
Q Consensus       160 ~s~hK~l~~P~g~G~l~vr~~~~~~  184 (448)
                      .++.|.++++ | |++.+.+++...
T Consensus       247 ~s~sK~~~~~-G-g~~~~~~~~~~~  269 (402)
T PRK07505        247 ASLGKAFGAS-G-GVIMLGDAEQIE  269 (402)
T ss_pred             Eechhhhhcc-C-eEEEeCCHHHHH
Confidence            7899998865 2 555444544433

>TIGR01325 O_suc_HS_sulf O-succinylhomoserine sulfhydrylase

Probab=99.63  E-value=1.3e-13  Score=140.61  Aligned_cols=144  Identities=13%  Similarity=0.105  Sum_probs=107.8

Q ss_pred             cEEEeCcHHHHHHHHHHHHHHhcCCcccccCCCCCCCeEEEecCCCchHH----HHHHHHhCCCCCcEEEEecCCCCCcC
Q psy14299          4 KPFLLPGGSISNMYSICLARYRLDPDTKRKGLSHLPPLCMFTSEDSHYSM----LKAAHWLGIGMDNVIRVKTNERGQMI   79 (448)
Q Consensus         4 ~g~~t~ggT~an~~al~~a~~~~~~~~~~~G~~~~~~~~Vl~~~~~H~s~----~~~~~~~g~~~~~v~~v~~~~~g~id   79 (448)
                      .++++++|++++..++.+...              +++.|+++...|.+.    ...+...|+   ++..++.+     |
T Consensus        71 ~~~~~~sG~~Ai~~al~al~~--------------~Gd~Vl~~~~~~~~t~~~~~~~~~~~g~---~v~~v~~~-----d  128 (380)
T TIGR01325        71 RAVATATGMSAIQAALMTLLQ--------------AGDHVVASRSLFGSTVGFISEILPRFGI---EVSFVDPT-----D  128 (380)
T ss_pred             cEEEECCHHHHHHHHHHHHhC--------------CCCEEEEecCCcchHHHHHHHHHHHhCC---EEEEECCC-----C
Confidence            468899999999888866543              456688887777553    334555677   67777764     7


Q ss_pred             HHHHHHHHHHhhhcCCCcEEEEEeccCCccccccCHHHHHHHHHHcCCEEEEecccccccccccchhhhhcCCCCccEEE
Q psy14299         80 CSFLEQTIQTSLAEKKIPLFVNATAGTTVLGAFDPLDEIATVCEKYDLWMHVDACWGGSLIFSEKYSFVLKGINRANSVS  159 (448)
Q Consensus        80 ~e~Le~~l~~~~~~~~~~~lVv~~~~~t~tG~~~~l~~I~~ia~~~g~~l~VD~A~~~~~~~~~~~~~~~~~~~~aD~~~  159 (448)
                      ++++++++++      ++++|+++.++|++|.+.|+++|.++||++|++++||++++.+....+ .     .. ++|+++
T Consensus       129 ~~~l~~~i~~------~tklV~le~p~np~g~~~dl~~I~~la~~~gi~livD~a~~~~~~~~p-l-----~~-g~Divv  195 (380)
T TIGR01325       129 LNAWEAAVKP------NTKLVFVETPSNPLGELVDIAALAELAHAIGALLVVDNVFATPVLQQP-L-----KL-GADVVV  195 (380)
T ss_pred             HHHHHHhcCC------CceEEEEECCCCCCCeeeCHHHHHHHHHHcCCEEEEECCCcccccCCc-h-----hh-CCCEEE
Confidence            8999888754      578999999999999999999999999999999999999875543211 1     11 479999


Q ss_pred             ECCccccCCCCc-eEEEEEeccch
Q psy14299        160 WNPHKMLGAPLQ-CSILLIKEKGL  182 (448)
Q Consensus       160 ~s~hK~l~~P~g-~G~l~vr~~~~  182 (448)
                      .|++|+++++.. .|.+++.++++
T Consensus       196 ~S~sK~l~g~g~~~gG~vv~~~~~  219 (380)
T TIGR01325       196 YSATKHIDGQGRVMGGVIAGSEEL  219 (380)
T ss_pred             eeccceecCCCCeEEEEEEeCHHH
Confidence            999999998753 33334434443

This model describes O-succinylhomoserine sulfhydrylase, one of several related pyridoxal phosphate-dependent enzymes of cysteine and methionine metabolism. This enzyme is part of an alternative pathway of homocysteine biosynthesis, a step in methionine biosynthesis.

>PRK07810 O-succinylhomoserine sulfhydrylase; Provisional

Probab=99.63  E-value=7e-14  Score=143.36  Aligned_cols=141  Identities=10%  Similarity=0.041  Sum_probs=109.2

Q ss_pred             cEEEeCcHHHHHHHHHHHHHHhcCCcccccCCCCCCCeEEEecCCCchHH----HHHHHHhCCCCCcEEEEecCCCCCcC
Q psy14299          4 KPFLLPGGSISNMYSICLARYRLDPDTKRKGLSHLPPLCMFTSEDSHYSM----LKAAHWLGIGMDNVIRVKTNERGQMI   79 (448)
Q Consensus         4 ~g~~t~ggT~an~~al~~a~~~~~~~~~~~G~~~~~~~~Vl~~~~~H~s~----~~~~~~~g~~~~~v~~v~~~~~g~id   79 (448)
                      ..+++++|+.++..++.+...              +++.|+++...|...    .+.++..|+   ++..++.+     |
T Consensus        87 ~al~~~sG~~Ai~~~l~all~--------------~Gd~Vl~~~~~~~~t~~~~~~~~~~~G~---~v~~vd~~-----d  144 (403)
T PRK07810         87 ACFATASGMSAVFTALGALLG--------------AGDRLVAARSLFGSCFVVCNEILPRWGV---ETVFVDGE-----D  144 (403)
T ss_pred             cEEEECChHHHHHHHHHHHhC--------------CCCEEEEccCCcchHHHHHHHHHHHcCc---EEEEECCC-----C
Confidence            578999999998887766543              667788887776433    344555677   67777653     8


Q ss_pred             HHHHHHHHHHhhhcCCCcEEEEEeccCCccccccCHHHHHHHHHHcCCEEEEecccccccccccchhhhhcCCCCccEEE
Q psy14299         80 CSFLEQTIQTSLAEKKIPLFVNATAGTTVLGAFDPLDEIATVCEKYDLWMHVDACWGGSLIFSEKYSFVLKGINRANSVS  159 (448)
Q Consensus        80 ~e~Le~~l~~~~~~~~~~~lVv~~~~~t~tG~~~~l~~I~~ia~~~g~~l~VD~A~~~~~~~~~~~~~~~~~~~~aD~~~  159 (448)
                      ++++++++++      ++++|++++++|++|.+.|+++|+++||++|++++||++|+.+....+.      .. ++|+++
T Consensus       145 ~~~l~~ai~~------~tklV~~esp~Nptg~v~dl~~I~~la~~~g~~vivD~a~a~~~~~~~~------~~-gaDivv  211 (403)
T PRK07810        145 LSQWEEALSV------PTQAVFFETPSNPMQSLVDIAAVSELAHAAGAKVVLDNVFATPLLQRGL------PL-GADVVV  211 (403)
T ss_pred             HHHHHHhcCc------CceEEEEECCCCCCCeecCHHHHHHHHHHcCCEEEEECCCCccccCChh------hc-CCcEEE
Confidence            9999999865      4789999999999999999999999999999999999999866542211      11 479999


Q ss_pred             ECCccccCCCCc--eEEEEEec
Q psy14299        160 WNPHKMLGAPLQ--CSILLIKE  179 (448)
Q Consensus       160 ~s~hK~l~~P~g--~G~l~vr~  179 (448)
                      .|++|+++++..  .|+++.++
T Consensus       212 ~S~tK~l~g~g~~~gG~v~~~~  233 (403)
T PRK07810        212 YSGTKHIDGQGRVLGGAILGDR  233 (403)
T ss_pred             ccCCceecCCcCceeEEEEeCh
Confidence            999999987654  46555544

>PRK06234 methionine gamma-lyase; Provisional

Probab=99.63  E-value=1.5e-13  Score=140.85  Aligned_cols=141  Identities=14%  Similarity=0.094  Sum_probs=109.8

Q ss_pred             cEEEeCcHHHHHHHHHHHHHHhcCCcccccCCCCCCCeEEEecCCCchHHHH----HHHHhCCCCCcEEEEecCCCCCcC
Q psy14299          4 KPFLLPGGSISNMYSICLARYRLDPDTKRKGLSHLPPLCMFTSEDSHYSMLK----AAHWLGIGMDNVIRVKTNERGQMI   79 (448)
Q Consensus         4 ~g~~t~ggT~an~~al~~a~~~~~~~~~~~G~~~~~~~~Vl~~~~~H~s~~~----~~~~~g~~~~~v~~v~~~~~g~id   79 (448)
                      ..++++||+.++..++.+...              +++.|+++...|.+...    .++..|+   +++.++.+     |
T Consensus        81 ~~l~~~sG~~Ai~~al~~ll~--------------~Gd~Vl~~~~~y~~~~~~~~~~~~~~G~---~v~~vd~~-----d  138 (400)
T PRK06234         81 AAVVAASGMGAISSSLWSALK--------------AGDHVVASDTLYGCTFALLNHGLTRYGV---EVTFVDTS-----N  138 (400)
T ss_pred             cEEEEcCHHHHHHHHHHHHhC--------------CCCEEEEecCccchHHHHHHHHHhhCCe---EEEEECCC-----C
Confidence            468999999998877765543              56778888887766443    3455666   67777754     8


Q ss_pred             HHHHHHHHHHhhhcCCCcEEEEEeccCCccccccCHHHHHHHHHHc--CCEEEEecccccccccccchhhhhcCCCCccE
Q psy14299         80 CSFLEQTIQTSLAEKKIPLFVNATAGTTVLGAFDPLDEIATVCEKY--DLWMHVDACWGGSLIFSEKYSFVLKGINRANS  157 (448)
Q Consensus        80 ~e~Le~~l~~~~~~~~~~~lVv~~~~~t~tG~~~~l~~I~~ia~~~--g~~l~VD~A~~~~~~~~~~~~~~~~~~~~aD~  157 (448)
                      ++++++++++      ++++|+++.++|++|.+.|+++|.++||++  |+++++|++|+.+....+     . +. ++|+
T Consensus       139 ~e~l~~~i~~------~tklI~iesP~NPtG~v~dl~~I~~la~~~~~~i~livDea~~~~~~~~~-----l-~~-g~Di  205 (400)
T PRK06234        139 LEEVRNALKA------NTKVVYLETPANPTLKVTDIKAISNIAHENNKECLVFVDNTFCTPYIQRP-----L-QL-GADV  205 (400)
T ss_pred             HHHHHHHhcc------CCeEEEEECCCCCCCCcCCHHHHHHHHHhcCCCCEEEEECCCCchhcCCc-----h-hh-CCcE
Confidence            9999999864      478999999999999999999999999997  999999999987654211     1 11 4799


Q ss_pred             EEECCccccCCCCc--eEEEEEec
Q psy14299        158 VSWNPHKMLGAPLQ--CSILLIKE  179 (448)
Q Consensus       158 ~~~s~hK~l~~P~g--~G~l~vr~  179 (448)
                      ++.|++|++++|..  .|+++.++
T Consensus       206 vv~S~sK~l~g~g~~~gG~v~~~~  229 (400)
T PRK06234        206 VVHSATKYLNGHGDVIAGFVVGKE  229 (400)
T ss_pred             EEeeccccccCCCCceeEEEEecH
Confidence            99999999998764  46666544

>PRK08247 cystathionine gamma-synthase; Reviewed

Probab=99.63  E-value=4.7e-14  Score=143.08  Aligned_cols=142  Identities=16%  Similarity=0.109  Sum_probs=104.4

Q ss_pred             cEEEeCcHHHHHHHHHHHHHHhcCCcccccCCCCCCCeEEEecCCCchHHH----HHHHHhCCCCCcEEEEecCCCCCcC
Q psy14299          4 KPFLLPGGSISNMYSICLARYRLDPDTKRKGLSHLPPLCMFTSEDSHYSML----KAAHWLGIGMDNVIRVKTNERGQMI   79 (448)
Q Consensus         4 ~g~~t~ggT~an~~al~~a~~~~~~~~~~~G~~~~~~~~Vl~~~~~H~s~~----~~~~~~g~~~~~v~~v~~~~~g~id   79 (448)
                      ..++++||+.++..++ .+..              +++.|+++...+.+..    ..++..|+   +++.++..     |
T Consensus        69 ~~~~~~sG~~ai~~~~-~ll~--------------~Gd~Vl~~~~~y~~t~~~~~~~~~~~G~---~v~~vd~~-----d  125 (366)
T PRK08247         69 QGFACSSGMAAIQLVM-SLFR--------------SGDELIVSSDLYGGTYRLFEEHWKKWNV---RFVYVNTA-----S  125 (366)
T ss_pred             cEEEEcCHHHHHHHHH-HHhC--------------CCCEEEEecCCcCcHHHHHHHHhhccCc---eEEEECCC-----C
Confidence            3588999998876554 3322              5567777877776533    33444566   67777653     8


Q ss_pred             HHHHHHHHHHhhhcCCCcEEEEEeccCCccccccCHHHHHHHHHHcCCEEEEecccccccccccchhhhhcCCCCccEEE
Q psy14299         80 CSFLEQTIQTSLAEKKIPLFVNATAGTTVLGAFDPLDEIATVCEKYDLWMHVDACWGGSLIFSEKYSFVLKGINRANSVS  159 (448)
Q Consensus        80 ~e~Le~~l~~~~~~~~~~~lVv~~~~~t~tG~~~~l~~I~~ia~~~g~~l~VD~A~~~~~~~~~~~~~~~~~~~~aD~~~  159 (448)
                      ++++++++++      ++++|+++.++|++|...|+++|+++|++||+++++|.+++......+.     .  .++|+++
T Consensus       126 ~~~l~~~i~~------~tklv~le~P~NP~~~~~dl~~I~~la~~~g~~lIvD~t~~~~~~~~p~-----~--~g~di~i  192 (366)
T PRK08247        126 LKAIEQAITP------NTKAIFIETPTNPLMQETDIAAIAKIAKKHGLLLIVDNTFYTPVLQRPL-----E--EGADIVI  192 (366)
T ss_pred             HHHHHHhccc------CceEEEEECCCCCCCcHHHHHHHHHHHHHcCCEEEEECCCccccccCch-----h--cCCcEEE
Confidence            9999998864      4789999999999999999999999999999999999999755432211     1  1479999


Q ss_pred             ECCccccCCCCc--eEEEEEeccc
Q psy14299        160 WNPHKMLGAPLQ--CSILLIKEKG  181 (448)
Q Consensus       160 ~s~hK~l~~P~g--~G~l~vr~~~  181 (448)
                      .|.+|+++++.+  .|++..+++.
T Consensus       193 ~S~sK~~~g~~d~~~G~iv~~~~~  216 (366)
T PRK08247        193 HSATKYLGGHNDVLAGLVVAKGQE  216 (366)
T ss_pred             eecceeccCCCceeeeEEecChHH
Confidence            999999998765  4544443333

>PRK07269 cystathionine gamma-synthase; Reviewed

Probab=99.63  E-value=3.2e-14  Score=144.01  Aligned_cols=145  Identities=10%  Similarity=-0.025  Sum_probs=102.5

Q ss_pred             cEEEeCcHHHHHHHHHHHHHHhcCCcccccCCCCCCCeEEEecCCCchHHHHHHHHhCCCCCcEEEEecCCCCCcCHHHH
Q psy14299          4 KPFLLPGGSISNMYSICLARYRLDPDTKRKGLSHLPPLCMFTSEDSHYSMLKAAHWLGIGMDNVIRVKTNERGQMICSFL   83 (448)
Q Consensus         4 ~g~~t~ggT~an~~al~~a~~~~~~~~~~~G~~~~~~~~Vl~~~~~H~s~~~~~~~~g~~~~~v~~v~~~~~g~id~e~L   83 (448)
                      .++.++||++|+.+++. +..              +++.|+++...+...........-.. .+ .+    ....|++++
T Consensus        71 ~~v~~~sG~aAi~~~l~-~l~--------------~GD~VI~~~~~yg~~~~~~~~~~~~~-~~-~~----~~~~d~~~l  129 (364)
T PRK07269         71 YALATSSGMSAIVLAFS-VFP--------------VGSKVVAVRDLYGGSFRWFNQQEKEG-RF-HF----TYANTEEEL  129 (364)
T ss_pred             eEEEeCCHHHHHHHHHH-HhC--------------CCCEEEEecCCcCchHHHHHHHHhcC-cE-EE----EecCCHHHH
Confidence            57889999999887773 332              56667777666544333222111100 11 11    123589999


Q ss_pred             HHHHHHhhhcCCCcEEEEEeccCCccccccCHHHHHHHHHHcCCEEEEecccccccccccchhhhhcCCCCccEEEECCc
Q psy14299         84 EQTIQTSLAEKKIPLFVNATAGTTVLGAFDPLDEIATVCEKYDLWMHVDACWGGSLIFSEKYSFVLKGINRANSVSWNPH  163 (448)
Q Consensus        84 e~~l~~~~~~~~~~~lVv~~~~~t~tG~~~~l~~I~~ia~~~g~~l~VD~A~~~~~~~~~~~~~~~~~~~~aD~~~~s~h  163 (448)
                      ++++++      ++++|++++++|++|.+.|+++|+++||++|++++||.+++......+     + + .++|+++.|.+
T Consensus       130 ~~~i~~------~TklV~lesP~NPtg~~~di~~I~~la~~~gi~vvvD~t~~~~~~~~p-----l-~-~gaDivv~S~t  196 (364)
T PRK07269        130 IAAIEE------DTDIVYIETPTNPLMVEFDIEKVAKLAHAKGAKVIVDNTFYSPIYQRP-----I-E-LGADIVLHSAT  196 (364)
T ss_pred             HHhcCc------CceEEEEECCCCCCCeeeCHHHHHHHHHHcCCEEEEECCCcccccCCc-----h-h-hCCcEEEecCc
Confidence            999864      588999999999999999999999999999999999999875543211     1 1 15899999999


Q ss_pred             cccCCCCc--eEEEEEeccch
Q psy14299        164 KMLGAPLQ--CSILLIKEKGL  182 (448)
Q Consensus       164 K~l~~P~g--~G~l~vr~~~~  182 (448)
                      |+++++..  .|+++.+++++
T Consensus       197 K~l~g~~d~~gG~v~~~~~~l  217 (364)
T PRK07269        197 KYLSGHNDVLAGVVVTNDLEL  217 (364)
T ss_pred             eeccCCCcccceEEEeCcHHH
Confidence            99999886  56666655543

>PRK03317 histidinol-phosphate aminotransferase; Provisional

Probab=99.63  E-value=1.7e-13  Score=139.07  Aligned_cols=150  Identities=13%  Similarity=-0.039  Sum_probs=110.9

Q ss_pred             cEEEeCcHHHHHHHHHHHHHHhcCCcccccCCCCCCCeEEEecCCCchHHHHHHHHhCCCCCcEEEEecCCCCCcCHHHH
Q psy14299          4 KPFLLPGGSISNMYSICLARYRLDPDTKRKGLSHLPPLCMFTSEDSHYSMLKAAHWLGIGMDNVIRVKTNERGQMICSFL   83 (448)
Q Consensus         4 ~g~~t~ggT~an~~al~~a~~~~~~~~~~~G~~~~~~~~Vl~~~~~H~s~~~~~~~~g~~~~~v~~v~~~~~g~id~e~L   83 (448)
                      ..++|+|+++++..++.+..+              +++.|++....+..+...++..|.   +++.++.++++.+|++++
T Consensus        90 ~I~it~G~~~~l~~~~~~~~~--------------~gd~v~v~~P~y~~~~~~~~~~g~---~~~~~~~~~~~~~d~~~l  152 (368)
T PRK03317         90 NVWAANGSNEILQQLLQAFGG--------------PGRTALGFVPSYSMHPIIARGTHT---EWVEGPRAADFTLDVDAA  152 (368)
T ss_pred             hEEECCCHHHHHHHHHHHhcC--------------CCCEEEEeCCChHHHHHHHHhcCC---eeEEcccCCCCCCCHHHH
Confidence            467889999998877776554              566788888888888888888777   677787766789999999


Q ss_pred             HHHHHHhhhcCCCcEEEEEeccCCccccccCHHHHHHHHHHcCCEEEEeccccccccccc-chhhhhcCCCCcc-EEEEC
Q psy14299         84 EQTIQTSLAEKKIPLFVNATAGTTVLGAFDPLDEIATVCEKYDLWMHVDACWGGSLIFSE-KYSFVLKGINRAN-SVSWN  161 (448)
Q Consensus        84 e~~l~~~~~~~~~~~lVv~~~~~t~tG~~~~l~~I~~ia~~~g~~l~VD~A~~~~~~~~~-~~~~~~~~~~~aD-~~~~s  161 (448)
                      ++++++     .++++++++.++|+||.+.+.+++.++++.+++++++|++|+....... .........  -+ +++.+
T Consensus       153 ~~~~~~-----~~~~~i~l~~p~NPtG~~~~~~~l~~l~~~~~~~lI~DE~y~~~~~~~~~~~~~~~~~~--~~~i~~~S  225 (368)
T PRK03317        153 VAAIAE-----HRPDVVFLTSPNNPTGTALPLDDVEAILDAAPGIVVVDEAYAEFRRSGTPSALTLLPEY--PRLVVSRT  225 (368)
T ss_pred             HHHHhc-----cCCCEEEEeCCCCCCCCCCCHHHHHHHHHHCCceEEEeCCchhhcccCCcCHHHHHHhC--CCEEEEEe
Confidence            999864     2467888899999999999999999999999999999999985432110 000111111  13 45558


Q ss_pred             CccccCCCC-ceEEEEE
Q psy14299        162 PHKMLGAPL-QCSILLI  177 (448)
Q Consensus       162 ~hK~l~~P~-g~G~l~v  177 (448)
                      +.|.++.|. -+|+++.
T Consensus       226 fSK~~g~~GlRiG~~~~  242 (368)
T PRK03317        226 MSKAFAFAGGRLGYLAA  242 (368)
T ss_pred             chhhhccchhhhhhhhC
Confidence            999987552 3466555

>PRK11706 TDP-4-oxo-6-deoxy-D-glucose transaminase; Provisional

Probab=99.63  E-value=1.7e-13  Score=139.54  Aligned_cols=149  Identities=18%  Similarity=0.165  Sum_probs=113.3

Q ss_pred             cEEEeCcHHHHHHHHHHHHHHhcCCcccccCCCCCCCeEEEecCCCchHHHHHHHHhCCCCCcEEEEecCCC-CCcCHHH
Q psy14299          4 KPFLLPGGSISNMYSICLARYRLDPDTKRKGLSHLPPLCMFTSEDSHYSMLKAAHWLGIGMDNVIRVKTNER-GQMICSF   82 (448)
Q Consensus         4 ~g~~t~ggT~an~~al~~a~~~~~~~~~~~G~~~~~~~~Vl~~~~~H~s~~~~~~~~g~~~~~v~~v~~~~~-g~id~e~   82 (448)
                      ..++|+|||.++.+++.++.-             .+++.|+++..+|.++..++...|.   +++.++.+++ +.+|+++
T Consensus        48 ~~v~~~sgt~al~~~l~~~~~-------------~~Gd~Viv~~~t~~~~~~~~~~~G~---~~v~~d~d~~~~~~d~~~  111 (375)
T PRK11706         48 KVLLTPSCTAALEMAALLLDI-------------QPGDEVIMPSYTFVSTANAFVLRGA---KIVFVDIRPDTMNIDETL  111 (375)
T ss_pred             eEEEECCHHHHHHHHHHHhCC-------------CCCCEEEECCCCcHHHHHHHHHcCC---EEEEEecCCCcCCcCHHH
Confidence            478999999997776654322             2677899999999999999999998   7889998876 4899999


Q ss_pred             HHHHHHHhhhcCCCcEEEEEeccCCccccccCHHHHHHHHHHcCCEEEEecccccccccccchhhhhcCCCCccEEEECC
Q psy14299         83 LEQTIQTSLAEKKIPLFVNATAGTTVLGAFDPLDEIATVCEKYDLWMHVDACWGGSLIFSEKYSFVLKGINRANSVSWNP  162 (448)
Q Consensus        83 Le~~l~~~~~~~~~~~lVv~~~~~t~tG~~~~l~~I~~ia~~~g~~l~VD~A~~~~~~~~~~~~~~~~~~~~aD~~~~s~  162 (448)
                      +++++.+      ++++|++++   ++|...|+++|.++|++||+++++|+||+.+...... .  +..  ..|+-++|+
T Consensus       112 le~~i~~------~tk~i~~~~---~~G~~~~~~~i~~la~~~~i~vIeD~a~a~g~~~~~~-~--~g~--~~~~~~~Sf  177 (375)
T PRK11706        112 IEAAITP------KTRAIVPVH---YAGVACEMDTIMALAKKHNLFVVEDAAQGVMSTYKGR-A--LGT--IGHIGCFSF  177 (375)
T ss_pred             HHHhcCC------CCeEEEEeC---CCCCccCHHHHHHHHHHcCCEEEEECccccccccCCe-e--eec--CcCEEEEeC
Confidence            9999854      477888765   4899999999999999999999999999988642111 0  111  247777887


Q ss_pred             c--cccCCCCceEEEEEeccchh
Q psy14299        163 H--KMLGAPLQCSILLIKEKGLL  183 (448)
Q Consensus       163 h--K~l~~P~g~G~l~vr~~~~~  183 (448)
                      |  |.+.+ ...|++++.++++.
T Consensus       178 ~~~K~l~~-g~gG~~~~~~~~~~  199 (375)
T PRK11706        178 HETKNYTA-GEGGALLINDPALI  199 (375)
T ss_pred             CCCccccc-cCCeEEEECCHHHH
Confidence            7  98865 33455556555443

>PRK01533 histidinol-phosphate aminotransferase; Validated

Probab=99.62  E-value=3.5e-14  Score=143.99  Aligned_cols=276  Identities=12%  Similarity=0.024  Sum_probs=172.0

Q ss_pred             cEEEeCcHHHHHHHHHHHHHHhcCCcccccCCCCCCCeEEEecCCCchHHHHHHHHhCCCCCcEEEEecCCCCCcCHHHH
Q psy14299          4 KPFLLPGGSISNMYSICLARYRLDPDTKRKGLSHLPPLCMFTSEDSHYSMLKAAHWLGIGMDNVIRVKTNERGQMICSFL   83 (448)
Q Consensus         4 ~g~~t~ggT~an~~al~~a~~~~~~~~~~~G~~~~~~~~Vl~~~~~H~s~~~~~~~~g~~~~~v~~v~~~~~g~id~e~L   83 (448)
                      ..++|+|+++++..++.+...              +++.|+++...+..+...++..|.   +++.+|.+ ++.+|+++|
T Consensus        83 ~I~vt~Gs~e~i~~~~~~l~~--------------~gd~vlv~~P~y~~~~~~~~~~g~---~v~~v~~~-~~~~d~~~l  144 (366)
T PRK01533         83 QVLCGSGLDEVIQIISRAVLK--------------AGDNIVTAGATFPQYRHHAIIEGC---EVKEVALN-NGVYDLDEI  144 (366)
T ss_pred             eEEECCCHHHHHHHHHHHhcC--------------CCCEEEEcCCcHHHHHHHHHHcCC---EEEEeecC-CCCcCHHHH
Confidence            468999999998877766543              567788898999999999999998   78899985 557999999


Q ss_pred             HHHHHHhhhcCCCcEEEEEeccCCccccccCHHHHHHHHH---HcCCEEEEecccccccccccchhhhhcCCC--CccEE
Q psy14299         84 EQTIQTSLAEKKIPLFVNATAGTTVLGAFDPLDEIATVCE---KYDLWMHVDACWGGSLIFSEKYSFVLKGIN--RANSV  158 (448)
Q Consensus        84 e~~l~~~~~~~~~~~lVv~~~~~t~tG~~~~l~~I~~ia~---~~g~~l~VD~A~~~~~~~~~~~~~~~~~~~--~aD~~  158 (448)
                      ++++++      +++++++++++|+||.+.+.+++.++++   +++ ++++|.+|.-.... .........+.  .--++
T Consensus       145 ~~~~~~------~~~~v~i~~P~NPTG~~~~~~~l~~l~~~~~~~~-~~iiDe~y~~~~~~-~~~~~~~~~~~~~~~vi~  216 (366)
T PRK01533        145 SSVVDN------DTKIVWICNPNNPTGTYVNDRKLTQFIEGISENT-LIVIDEAYYEYVTA-KDFPETLPLLEKHKNILV  216 (366)
T ss_pred             HHHhCc------CCcEEEEeCCCCCCCCCcCHHHHHHHHHhCCCCC-EEEEEccHHHhhcc-ccCcchhHHhccCCCEEE
Confidence            998854      4678999999999999988776666554   444 67889998632211 00000000000  11245


Q ss_pred             EECCccccCCCC-ceEEEEEeccchhhhhccCCcccccccCcccccccCCCCCcccCCCCchhHHHHHHHHHhChHHHHH
Q psy14299        159 SWNPHKMLGAPL-QCSILLIKEKGLLHQANATAATYLFQQDKFYDVSFDTGDKSVQCGRKVDAFKLWLMWKARGNLGFRH  237 (448)
Q Consensus       159 ~~s~hK~l~~P~-g~G~l~vr~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~g~~~  237 (448)
                      +.|+.|.++.|. -+|+++. ++++..........                                             
T Consensus       217 ~~SfSK~~~l~GlRiG~~i~-~~~~~~~l~~~~~~---------------------------------------------  250 (366)
T PRK01533        217 LRTFSKAYGLASFRVGYAVG-HEELIEKLNVVRLP---------------------------------------------  250 (366)
T ss_pred             EeCchHHhcChHHHHhHHhC-CHHHHHHHHHhcCC---------------------------------------------
Confidence            566777665432 2344333 22222221110000                                             


Q ss_pred             HHHHhhhhccCCCccchhhhhhhhhhhhhhhhhhhhhhhccccccccccCCCCCccccccchhhHHHHHHHHHhcCccHH
Q psy14299        238 FVDNAVDCSRGSMTFSTLLCFDLQGLLHQANATAATYLFQQDKFYDVSFDTGDKSVQCGRKVDAFKLWLMWKARGNLGFR  317 (448)
Q Consensus       238 ~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~  317 (448)
                                                                              .|.+.+.+..+..+++  ..+.++
T Consensus       251 --------------------------------------------------------~~~~~~~q~aa~~~l~--~~~~~~  272 (366)
T PRK01533        251 --------------------------------------------------------FNVSSLAQKAATIAFG--DDEFIE  272 (366)
T ss_pred             --------------------------------------------------------CCcCHHHHHHHHHHhC--CHHHHH
Confidence                                                                    0111111111122221  122344


Q ss_pred             HHHHHHHHHHHHHHHHhhcCCCeEEeccCCceeeEEEEeeccCCCccccchhhhhhhhhhhHHHHHHHHhCCcEEEEeee
Q psy14299        318 HFVDNAVDCSRYFLSQISQRPGFRLVIPEFQCTNICFWFIPVSLRDKVEDETWWSTLSKVAPRIKEKLVLGGTLMIGYQP  397 (448)
Q Consensus       318 ~~~~~~~~l~~~~~~~L~~~pg~~l~~~~~~~~~v~f~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~L~~~g~~~~~~~~  397 (448)
                      ++.+...+.++++.+.++.+ |+++.  ++..+.+.+.+ +   .               ..++.+.|.++|+ .+.+. 
T Consensus       273 ~~~~~~~~~r~~~~~~l~~~-g~~~~--~~~~nf~~~~~-~---~---------------~~~~~~~l~~~GI-~Vr~~-  328 (366)
T PRK01533        273 EIVRVNTEGLRQYESFCKEN-EIPFY--QSQTNFIFLPV-E---N---------------GGEIYEACAHAGF-IIRPF-  328 (366)
T ss_pred             HHHHHHHHHHHHHHHHHHhC-CCccC--CCcCcEEEEeC-C---C---------------HHHHHHHHHHCCc-EEccC-
Confidence            45555666777788888887 88764  45555444432 2   1               1368899999994 44441 


Q ss_pred             cCCcccccEEEEEecCCCCCCHHHHHHHHHHHHHHHHHhHHhhhhhh
Q psy14299        398 LQHRNLHNFFRLVTTCHPASSRQDMDYAIDQIELRGAEVDLEMQAEA  444 (448)
Q Consensus       398 ~~g~~~~~~lRis~~~~~~~t~edid~l~~al~~~~~~~~~~~~~~~  444 (448)
                            ++++||+++     +.++.++|+++|+++.+...+++..++
T Consensus       329 ------~~~iRis~~-----~~~~~~~l~~al~~~~~~~~~~~~~~~  364 (366)
T PRK01533        329 ------PNGVRITVG-----TREQNEGVISVLQQHFENKKRKSRDEA  364 (366)
T ss_pred             ------CCceEEeCC-----CHHHHHHHHHHHHHHHHhccccccccc
Confidence                  257999995     789999999999999887766665554

>PRK06358 threonine-phosphate decarboxylase; Provisional

Probab=99.62  E-value=3.3e-13  Score=136.31  Aligned_cols=151  Identities=13%  Similarity=0.112  Sum_probs=103.1

Q ss_pred             cEEEeCcHHHHHHHHHHHHHHhcCCcccccCCCCCCCeEEEecCCCchHHHHHHHHhCCCCCcEEEEecCCC--CCcCHH
Q psy14299          4 KPFLLPGGSISNMYSICLARYRLDPDTKRKGLSHLPPLCMFTSEDSHYSMLKAAHWLGIGMDNVIRVKTNER--GQMICS   81 (448)
Q Consensus         4 ~g~~t~ggT~an~~al~~a~~~~~~~~~~~G~~~~~~~~Vl~~~~~H~s~~~~~~~~g~~~~~v~~v~~~~~--g~id~e   81 (448)
                      ..++|+|+++++..++.+. .              ++ .|+++...+..+...++..|.   +++.++.+.+  +.+| +
T Consensus        73 ~i~it~Ga~~~l~~~~~~~-~--------------~~-~v~i~~P~y~~~~~~~~~~g~---~~~~~~~~~~~~~~~d-~  132 (354)
T PRK06358         73 NVILGNGATELIFNIVKVT-K--------------PK-KVLILAPTFAEYERALKAFDA---EIEYAELTEETNFAAN-E  132 (354)
T ss_pred             hEEECCCHHHHHHHHHHHh-C--------------CC-cEEEecCChHHHHHHHHHcCC---eeEEEeCccccCCCcc-H
Confidence            4689999999987776542 2              32 466788888888888888888   7888888643  4678 5


Q ss_pred             HHHHHHHHhhhcCCCcEEEEEeccCCccccccC---HHHHHHHHHHcCCEEEEecccccccccccchhhhhcCCCCcc--
Q psy14299         82 FLEQTIQTSLAEKKIPLFVNATAGTTVLGAFDP---LDEIATVCEKYDLWMHVDACWGGSLIFSEKYSFVLKGINRAN--  156 (448)
Q Consensus        82 ~Le~~l~~~~~~~~~~~lVv~~~~~t~tG~~~~---l~~I~~ia~~~g~~l~VD~A~~~~~~~~~~~~~~~~~~~~aD--  156 (448)
                      ++.+.+.+      ++++|++++++|+||...+   +++|.++|++||+++++|++|.-....... ......+...+  
T Consensus       133 ~~~~~~~~------~~~~v~~~~P~NPtG~~~~~~~~~~l~~~a~~~~~~ii~De~Y~~~~~~~~~-~~~~~~~~~~~~v  205 (354)
T PRK06358        133 IVLEEIKE------EIDLVFLCNPNNPTGQLISKEEMKKILDKCEKRNIYLIIDEAFMDFLEENET-ISMINYLENFKNL  205 (354)
T ss_pred             HHHHhhcc------CCCEEEEeCCCCCCCCccCHHHHHHHHHHHHhcCCEEEEeCcccccCCCccc-hhHHHhccCCCCE
Confidence            55555532      4778889999999998876   788888999999999999998744321110 00011111111  


Q ss_pred             EEEECCccccCCC-CceEEEEEeccc
Q psy14299        157 SVSWNPHKMLGAP-LQCSILLIKEKG  181 (448)
Q Consensus       157 ~~~~s~hK~l~~P-~g~G~l~vr~~~  181 (448)
                      ++..|+.|.++.| .-+|+++..++.
T Consensus       206 i~~~S~SK~~gl~G~RiG~lv~~~~~  231 (354)
T PRK06358        206 IIIRAFTKFFAIPGLRLGYGLTSNKN  231 (354)
T ss_pred             EEEEechhhccCcchhheeeecCCHH
Confidence            5567889988744 556776654433

>TIGR02080 O_succ_thio_ly O-succinylhomoserine (thiol)-lyase

Probab=99.62  E-value=2.7e-13  Score=138.16  Aligned_cols=147  Identities=12%  Similarity=0.050  Sum_probs=109.5

Q ss_pred             cEEEeCcHHHHHHHHHHHHHHhcCCcccccCCCCCCCeEEEecCCCchHHHHHHH-HhCCCCCcEEEEecCCCCCcCHHH
Q psy14299          4 KPFLLPGGSISNMYSICLARYRLDPDTKRKGLSHLPPLCMFTSEDSHYSMLKAAH-WLGIGMDNVIRVKTNERGQMICSF   82 (448)
Q Consensus         4 ~g~~t~ggT~an~~al~~a~~~~~~~~~~~G~~~~~~~~Vl~~~~~H~s~~~~~~-~~g~~~~~v~~v~~~~~g~id~e~   82 (448)
                      .+++++||++++..++.+...              +++.|+++...|.+....+. +.+....++..++.     .|+++
T Consensus        68 ~v~~~~gg~~Ai~~~l~all~--------------~GD~Vl~~~p~y~~~~~~~~~~~~~~~~~v~~~d~-----~d~~~  128 (382)
T TIGR02080        68 GAVVTNTGMSAIHLVTTALLG--------------PDDLLVAPHDCYGGTYRLLNALAKKGCFRVLFVDQ-----GDEQA  128 (382)
T ss_pred             cEEEEcCHHHHHHHHHHHHcC--------------CCCEEEEcCCCcHHHHHHHHHHHhhcCeEEEEECC-----CCHHH
Confidence            478999999998877766533              56788889888886555443 23332224444432     38899


Q ss_pred             HHHHHHHhhhcCCCcEEEEEeccCCccccccCHHHHHHHHHHcCCEEEEecccccccccccchhhhhcCCCCccEEEECC
Q psy14299         83 LEQTIQTSLAEKKIPLFVNATAGTTVLGAFDPLDEIATVCEKYDLWMHVDACWGGSLIFSEKYSFVLKGINRANSVSWNP  162 (448)
Q Consensus        83 Le~~l~~~~~~~~~~~lVv~~~~~t~tG~~~~l~~I~~ia~~~g~~l~VD~A~~~~~~~~~~~~~~~~~~~~aD~~~~s~  162 (448)
                      +++++++      ++++|+++.++|++|.+.|+++|.++||++|++++||.+|..+....+ .    . . ++|+++.|+
T Consensus       129 l~~ai~~------~tklV~l~~p~NPtG~~~dl~~I~~la~~~g~~vvvD~a~~~~~~~~p-l----~-~-gaDivv~S~  195 (382)
T TIGR02080       129 LRAALAQ------KPKLVLIETPSNPLLRVVDIAKICHLAKAVGAVVVVDNTFLSPALQNP-L----A-L-GADLVLHSC  195 (382)
T ss_pred             HHHhcCc------CceEEEEECCCCCCCEecCHHHHHHHHHHcCCEEEEECCCcccccCCc-h----h-h-CCCEEEeec
Confidence            9998854      478999999999999999999999999999999999999976643211 1    0 1 479999999


Q ss_pred             ccccCCCCc--eEEEEEeccch
Q psy14299        163 HKMLGAPLQ--CSILLIKEKGL  182 (448)
Q Consensus       163 hK~l~~P~g--~G~l~vr~~~~  182 (448)
                      +|+++++.+  .|++..++++.
T Consensus       196 sK~l~G~~~~~~G~i~~~~~~~  217 (382)
T TIGR02080       196 TKYLNGHSDVIAGAVIAKDPQV  217 (382)
T ss_pred             ceeccCCCCceeEEEEeCCHHH
Confidence            999998877  66666655543

This family consists of O-succinylhomoserine (thiol)-lyase, one of three different enzymes designated cystathionine gamma-synthase and involved in methionine biosynthesis. In all three cases, sulfur is added by transsulfuration from Cys to yield cystathionine rather than by a sulfhydrylation step that uses H2S directly and bypasses cystathionine.

>PLN02231 alanine transaminase

Probab=99.62  E-value=5.5e-13  Score=141.16  Aligned_cols=121  Identities=12%  Similarity=0.043  Sum_probs=100.6

Q ss_pred             cEEEeCcHHHHHHHHHHHHHHhcCCcccccCCCCCCCeEEEecCCCchHHHHHHHHhCCCCCcEEEEecCC--CCCcCHH
Q psy14299          4 KPFLLPGGSISNMYSICLARYRLDPDTKRKGLSHLPPLCMFTSEDSHYSMLKAAHWLGIGMDNVIRVKTNE--RGQMICS   81 (448)
Q Consensus         4 ~g~~t~ggT~an~~al~~a~~~~~~~~~~~G~~~~~~~~Vl~~~~~H~s~~~~~~~~g~~~~~v~~v~~~~--~g~id~e   81 (448)
                      ..++|+|+++++.+++.+....             +++.|+++...+..+...++..|.   +++.++.++  ++.+|++
T Consensus       193 ~I~iT~Ga~~ai~~~~~~l~~~-------------~gd~Vli~~P~Y~~y~~~~~~~g~---~~v~~~l~~~~~~~~d~~  256 (534)
T PLN02231        193 DIFLTDGASPAVHMMMQLLIRS-------------EKDGILCPIPQYPLYSASIALHGG---TLVPYYLDEATGWGLEIS  256 (534)
T ss_pred             cEEEeCCHHHHHHHHHHHhccC-------------CCCEEEEeCCCChhHHHHHHHcCC---EEEEEecCcccCCCCCHH
Confidence            4789999999988887776542             567799999999999999999888   788888875  3689999


Q ss_pred             HHHHHHHHhhhcCCCcEEEEEeccCCccccccC---HHHHHHHHHHcCCEEEEecccccccc
Q psy14299         82 FLEQTIQTSLAEKKIPLFVNATAGTTVLGAFDP---LDEIATVCEKYDLWMHVDACWGGSLI  140 (448)
Q Consensus        82 ~Le~~l~~~~~~~~~~~lVv~~~~~t~tG~~~~---l~~I~~ia~~~g~~l~VD~A~~~~~~  140 (448)
                      +|++++++....+.++++++++.++|+||.+.+   +++|.++|++||++++.|.+|.-..+
T Consensus       257 ~Le~~l~~~~~~~~~~k~ivl~nP~NPTG~vls~e~l~~Iv~~a~~~~l~lI~DEvY~~l~y  318 (534)
T PLN02231        257 ELKKQLEDARSKGITVRALVVINPGNPTGQVLAEENQRDIVEFCKQEGLVLLADEVYQENVY  318 (534)
T ss_pred             HHHHHHHHHhhcCCCeEEEEEeCCCCCCCcCCCHHHHHHHHHHHHHcCCEEEEEccchhccc
Confidence            999999765444446889999999999998754   67889999999999999999886544

>PRK06425 histidinol-phosphate aminotransferase; Validated

Probab=99.62  E-value=3.2e-13  Score=135.12  Aligned_cols=151  Identities=15%  Similarity=0.082  Sum_probs=100.4

Q ss_pred             cEEEeCcHHHHHHHHHHHHHHhcCCcccccCCCCCCCeEEEecCCCchHHHHHHHHhCCCCCcEEEEecCCCCCcCHHHH
Q psy14299          4 KPFLLPGGSISNMYSICLARYRLDPDTKRKGLSHLPPLCMFTSEDSHYSMLKAAHWLGIGMDNVIRVKTNERGQMICSFL   83 (448)
Q Consensus         4 ~g~~t~ggT~an~~al~~a~~~~~~~~~~~G~~~~~~~~Vl~~~~~H~s~~~~~~~~g~~~~~v~~v~~~~~g~id~e~L   83 (448)
                      ..++|+|+++++.+++. +..              ++.+|+ .+..+..+...++..|.   +++.+|.++ ..+|++.+
T Consensus        59 ~I~it~Gs~~~l~~~~~-~~~--------------~~~vv~-~~P~y~~y~~~~~~~G~---~v~~vp~~~-~~~~~~~l  118 (332)
T PRK06425         59 KVLIGPGLTHFIYRLLS-YIN--------------VGNIII-VEPNFNEYKGYAFTHGI---RISALPFNL-INNNPEIL  118 (332)
T ss_pred             eEEECCCHHHHHHHHHH-HhC--------------CCcEEE-eCCChHHHHHHHHHcCC---eEEEEeCCc-ccCcHHHH
Confidence            47899999999877764 222              444444 47888899999999999   799999864 34455444


Q ss_pred             HHHHHHhhhcCCCcEEEEEeccCCccccccC---HHHHHHHHHHcCCEEEEecccccccccc-cchhhhhcCCCCccEEE
Q psy14299         84 EQTIQTSLAEKKIPLFVNATAGTTVLGAFDP---LDEIATVCEKYDLWMHVDACWGGSLIFS-EKYSFVLKGINRANSVS  159 (448)
Q Consensus        84 e~~l~~~~~~~~~~~lVv~~~~~t~tG~~~~---l~~I~~ia~~~g~~l~VD~A~~~~~~~~-~~~~~~~~~~~~aD~~~  159 (448)
                      +    +     .++++|+++.++|+||.+.+   +++|.++|++||+++++|.++.-..... +......... .--+++
T Consensus       119 ~----~-----~~~k~v~l~nP~NPTG~~~s~~~~~~l~~~a~~~~~~iI~DE~Y~~~~~~~~~~~~~~~~~~-~~vi~~  188 (332)
T PRK06425        119 N----N-----YNFDLIFIVSPDNPLGNLISRDSLLTISEICRKKGALLFIDEAFIDFVPNRAEEDVLLNRSY-GNVIIG  188 (332)
T ss_pred             h----h-----cCCCEEEEeCCCCCcCCccCHHHHHHHHHHHHHcCCEEEEecchhccccccchhHHHHhccC-CCEEEE
Confidence            3    2     14778999999999998877   5667778899999999999987543211 0001111110 012555


Q ss_pred             ECCccccCCC-CceEEEEEeccchhhh
Q psy14299        160 WNPHKMLGAP-LQCSILLIKEKGLLHQ  185 (448)
Q Consensus       160 ~s~hK~l~~P-~g~G~l~vr~~~~~~~  185 (448)
                      .|+.|.++.| .-+|+++. ++++...
T Consensus       189 ~SfSK~~~l~GlRiGy~v~-~~~li~~  214 (332)
T PRK06425        189 RSLTKILGIPSLRIGYIAT-DDYNMKI  214 (332)
T ss_pred             eecHHhcCCchhhheeeec-CHHHHHH
Confidence            6889998855 33577665 3344433

>TIGR02379 ECA_wecE TDP-4-keto-6-deoxy-D-glucose transaminase

Probab=99.62  E-value=2.1e-13  Score=138.75  Aligned_cols=153  Identities=16%  Similarity=0.165  Sum_probs=113.1

Q ss_pred             cEEEeCcHHHHHHHHHHHHHHhcCCcccccCCCCCCCeEEEecCCCchHHHHHHHHhCCCCCcEEEEecCCC-CCcCHHH
Q psy14299          4 KPFLLPGGSISNMYSICLARYRLDPDTKRKGLSHLPPLCMFTSEDSHYSMLKAAHWLGIGMDNVIRVKTNER-GQMICSF   82 (448)
Q Consensus         4 ~g~~t~ggT~an~~al~~a~~~~~~~~~~~G~~~~~~~~Vl~~~~~H~s~~~~~~~~g~~~~~v~~v~~~~~-g~id~e~   82 (448)
                      ..++|+|||+++.+++.++.-             .|++.|+++..+|.+...++...|.   +++.++.+++ +.+|+++
T Consensus        48 ~~v~~~sgt~aL~~~l~al~~-------------~pGd~Viv~~~t~~~~~~~~~~~G~---~~v~vd~d~~~~~~d~~~  111 (376)
T TIGR02379        48 KALLTPSCTAALEMAALLLDI-------------QPGDEVIMPSYTFVSTANAFVLRGA---KIVFVDIRPDTMNIDETL  111 (376)
T ss_pred             eEEEeCCHHHHHHHHHHHcCC-------------CCcCEEEECCCCcHHHHHHHHHcCC---EEEEEecCCCcCCCCHHH
Confidence            468999999997777654311             2678899999999999999998888   7899999876 5899999


Q ss_pred             HHHHHHHhhhcCCCcEEEEEeccCCccccccCHHHHHHHHHHcCCEEEEecccccccccccchhhhhcCCCCccEEEECC
Q psy14299         83 LEQTIQTSLAEKKIPLFVNATAGTTVLGAFDPLDEIATVCEKYDLWMHVDACWGGSLIFSEKYSFVLKGINRANSVSWNP  162 (448)
Q Consensus        83 Le~~l~~~~~~~~~~~lVv~~~~~t~tG~~~~l~~I~~ia~~~g~~l~VD~A~~~~~~~~~~~~~~~~~~~~aD~~~~s~  162 (448)
                      +++++.+      ++++|+.++   ++|...|+++|.++|++||+++++|+||+.+...... +  +..  ..|+.++|+
T Consensus       112 le~~i~~------~tk~Iip~~---~~G~~~d~~~I~~la~~~~i~vIeDaa~~~g~~~~~~-~--~g~--~~~~~~fSf  177 (376)
T TIGR02379       112 IESAITH------RTKAIVPVH---YAGVACDMDTIMALANKHQLFVIEDAAQGVMSTYKGR-A--LGS--IGHLGTFSF  177 (376)
T ss_pred             HHHhcCc------CceEEEEeC---CCCCccCHHHHHHHHHHCCCEEEEECccccCCccCCc-c--cCC--CCCEEEEeC
Confidence            9998854      477887554   5799999999999999999999999999987642111 1  111  236667776


Q ss_pred             cc--ccCCCCceEEEEEeccchhhhh
Q psy14299        163 HK--MLGAPLQCSILLIKEKGLLHQA  186 (448)
Q Consensus       163 hK--~l~~P~g~G~l~vr~~~~~~~~  186 (448)
                      |+  .+..-...|+++++++++....
T Consensus       178 ~~~K~l~~g~~gG~v~~~~~~~~~~~  203 (376)
T TIGR02379       178 HETKNYTSGGEGGALLINDQAFIERA  203 (376)
T ss_pred             CCCCcCcccCCceEEEECCHHHHHHH
Confidence            64  4432113566677666554443

This family consists of TDP-4-keto-6-deoxy-D-glucose transaminases, the WecE (formerly RffA) protein of enterobacterial common antigen (ECA) biosynthesis, from enterobacteria. It also includes closely matching sequence from species not expected to make ECA, but which contain other genes for the biosynthesis of TDP-4-keto-6-deoxy-D-Glc, an intermediate in the biosynthesis of other compounds as well and the substrate of WecA. This family belongs to the DegT/DnrJ/EryC1/StrS aminotransferase family (pfam01041).

>PRK15407 lipopolysaccharide biosynthesis protein RfbH; Provisional

Probab=99.62  E-value=9e-14  Score=143.94  Aligned_cols=157  Identities=14%  Similarity=0.141  Sum_probs=116.7

Q ss_pred             cEEEeCcHHHHHHHHHHHHHHhcCCcccccCCCCCCCeEEEecCCCchHHHHHHHHhCCCCCcEEEEecC-CCCCcCHHH
Q psy14299          4 KPFLLPGGSISNMYSICLARYRLDPDTKRKGLSHLPPLCMFTSEDSHYSMLKAAHWLGIGMDNVIRVKTN-ERGQMICSF   82 (448)
Q Consensus         4 ~g~~t~ggT~an~~al~~a~~~~~~~~~~~G~~~~~~~~Vl~~~~~H~s~~~~~~~~g~~~~~v~~v~~~-~~g~id~e~   82 (448)
                      .+++|+|||+++..++.++.....   ...++  .+++.|+++..+|.+...++...|.   .++.++++ +++.+|+++
T Consensus        80 ~~v~~~sGt~al~~aL~al~~~~~---~~~~~--~pGd~VIv~~~t~~a~~~~v~~~G~---~pv~vdvd~~~~~id~~~  151 (438)
T PRK15407         80 YALLVNSGSSANLLAFSALTSPKL---GDRAL--KPGDEVITVAAGFPTTVNPIIQNGL---VPVFVDVELPTYNIDASL  151 (438)
T ss_pred             eEEEECCHHHHHHHHHHHHhhccc---cccCC--CCCCEEEECCCCcHHHHHHHHHcCC---EEEEEecCCCcCCcCHHH
Confidence            478999999999999877643211   01122  2678899999999999999998888   67888876 467899999


Q ss_pred             HHHHHHHhhhcCCCcEEEEEeccCCccccccCHHHHHHHHHHcCCEEEEecccccccccccchhhhhcCCCCccEEEECC
Q psy14299         83 LEQTIQTSLAEKKIPLFVNATAGTTVLGAFDPLDEIATVCEKYDLWMHVDACWGGSLIFSEKYSFVLKGINRANSVSWNP  162 (448)
Q Consensus        83 Le~~l~~~~~~~~~~~lVv~~~~~t~tG~~~~l~~I~~ia~~~g~~l~VD~A~~~~~~~~~~~~~~~~~~~~aD~~~~s~  162 (448)
                      +++.+.+      ++++|++++.   .|...|+++|.++|++||+++++|+||+.|.......   +..  ..|+.++|+
T Consensus       152 le~~i~~------~tkaVi~~~~---~G~p~dl~~I~~la~~~gi~vIeDaa~a~G~~~~g~~---~G~--~gd~~~fSf  217 (438)
T PRK15407        152 LEAAVSP------KTKAIMIAHT---LGNPFDLAAVKAFCDKHNLWLIEDNCDALGSTYDGRM---TGT--FGDIATLSF  217 (438)
T ss_pred             HHHHcCc------CCeEEEEeCC---CCChhhHHHHHHHHHHCCCEEEEECccchhhhcCCee---eec--cCceEEEeC
Confidence            9998854      5788888874   6778899999999999999999999999988753321   111  236666666


Q ss_pred             c--cccCCCCceEEEEEeccchh
Q psy14299        163 H--KMLGAPLQCSILLIKEKGLL  183 (448)
Q Consensus       163 h--K~l~~P~g~G~l~vr~~~~~  183 (448)
                      |  |.+.+-.| |+++++++++.
T Consensus       218 ~~~k~~~~geG-G~l~t~d~~l~  239 (438)
T PRK15407        218 YPAHHITMGEG-GAVFTNDPLLK  239 (438)
T ss_pred             CCCCCccccCc-eEEEECCHHHH
Confidence            5  55554333 77888776543

>TIGR01885 Orn_aminotrans ornithine aminotransferase

Probab=99.61  E-value=5.1e-13  Score=137.17  Aligned_cols=288  Identities=16%  Similarity=0.109  Sum_probs=169.3

Q ss_pred             cEEEeCcHHHHHHHHHHHHHHhcCCcccccCCCCCCCeEEEecCCC-chHHHHHHHHhCC-------C--CCcEEEEecC
Q psy14299          4 KPFLLPGGSISNMYSICLARYRLDPDTKRKGLSHLPPLCMFTSEDS-HYSMLKAAHWLGI-------G--MDNVIRVKTN   73 (448)
Q Consensus         4 ~g~~t~ggT~an~~al~~a~~~~~~~~~~~G~~~~~~~~Vl~~~~~-H~s~~~~~~~~g~-------~--~~~v~~v~~~   73 (448)
                      ..+|+++|++||..|+..+|....   +..|+. ..+..|+..+.. |-+...+....+-       +  ...+..+|.+
T Consensus        96 ~~~~~~SGs~A~e~ai~~a~~~~~---~~~~~~-~~~~~i~~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  171 (401)
T TIGR01885        96 KVLPMNTGAEAVETAIKLARKWGY---KVKGIP-ENQAIIVSAKGNFHGRTLGAISMSTDPDSRTNFGPYVPGFKKIPYN  171 (401)
T ss_pred             EEEEeCccHHHHHHHHHHHHHHhh---hhcCCC-CCCCEEEEECCCcCcccHHHHhCcCCcccccccCCCCCCceEeCCC
Confidence            468999999999999999877411   111222 124456666666 4466666655431       0  0123444443


Q ss_pred             CCCCcCHHHHHHHHHHhhhcCCCcEEEEEeccCCccccccC----HHHHHHHHHHcCCEEEEecccccccccccch-hhh
Q psy14299         74 ERGQMICSFLEQTIQTSLAEKKIPLFVNATAGTTVLGAFDP----LDEIATVCEKYDLWMHVDACWGGSLIFSEKY-SFV  148 (448)
Q Consensus        74 ~~g~id~e~Le~~l~~~~~~~~~~~lVv~~~~~t~tG~~~~----l~~I~~ia~~~g~~l~VD~A~~~~~~~~~~~-~~~  148 (448)
                           |+++|++.+++.   +.+..+|++....+++|.+.|    +++|.++|++||+++++|++|.+ ....... ...
T Consensus       172 -----d~~~le~~l~~~---~~~~~avi~E~v~~~~G~~~~~~~~l~~l~~l~~~~~~lli~DEv~~g-~g~~G~~~~~~  242 (401)
T TIGR01885       172 -----NLEALEEALEDH---GPNVCAFIVEPIQGEAGVVVPDDGYLKKVRELCTKHNVLLIADEIQTG-LGRTGKLLCVD  242 (401)
T ss_pred             -----CHHHHHHHHHhc---CCCEEEEEEeCccCCCCCccCCHHHHHHHHHHHHHcCCEEEEechhhC-CCccchhhHHh
Confidence                 789999998642   235667888778888899887    99999999999999999999753 2111111 111


Q ss_pred             hcCCCCccEEEECCccccCCC-CceEEEEEeccchhhhhccCCcccccccCcccccccCCCCCcccCCCCchhHHHHHHH
Q psy14299        149 LKGINRANSVSWNPHKMLGAP-LQCSILLIKEKGLLHQANATAATYLFQQDKFYDVSFDTGDKSVQCGRKVDAFKLWLMW  227 (448)
Q Consensus       149 ~~~~~~aD~~~~s~hK~l~~P-~g~G~l~vr~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  227 (448)
                      ..++ ..|+++++  |.+++. ..+|+++.+ +++......   .+..  .            ++ .+            
T Consensus       243 ~~~~-~~di~~~g--K~l~~g~~~ig~v~~~-~~i~~~~~~---~~~~--~------------t~-~~------------  288 (401)
T TIGR01885       243 HENV-KPDIVLLG--KALSGGVYPVSAVLAD-DDVMLTIKP---GEHG--S------------TY-GG------------  288 (401)
T ss_pred             hcCC-CCCEEEee--ccccCCCCCcEEEEEc-HHHHhhccC---CCCC--C------------CC-CC------------
Confidence            1223 36888765  988754 345666654 344332211   0000  0            00 00            


Q ss_pred             HHhChHHHHHHHHHhhhhccCCCccchhhhhhhhhhhhhhhhhhhhhhhccccccccccCCCCCccccccchhhHHHHHH
Q psy14299        228 KARGNLGFRHFVDNAVDCSRGSMTFSTLLCFDLQGLLHQANATAATYLFQQDKFYDVSFDTGDKSVQCGRKVDAFKLWLM  307 (448)
Q Consensus       228 ~~~g~~g~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  307 (448)
                                                                                           +.+.......+
T Consensus       289 ---------------------------------------------------------------------~p~~~~aa~a~  299 (401)
T TIGR01885       289 ---------------------------------------------------------------------NPLACAVAVAA  299 (401)
T ss_pred             ---------------------------------------------------------------------CHHHHHHHHHH
Confidence                                                                                 01111122233


Q ss_pred             HHHhcCccHHHHHHHHHHHHHHHHHHhhcCCCeEEec-cCCceeeEEEEeeccCCCccccchhhhhhhhhhhHHHHHHHH
Q psy14299        308 WKARGNLGFRHFVDNAVDCSRYFLSQISQRPGFRLVI-PEFQCTNICFWFIPVSLRDKVEDETWWSTLSKVAPRIKEKLV  386 (448)
Q Consensus       308 ~~~~~~~G~~~~~~~~~~l~~~~~~~L~~~pg~~l~~-~~~~~~~v~f~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~L~  386 (448)
                      ++.+..++   +.++..++++++++.|+++ +..++. ..+...++.+.+.++..             .....++.+.|.
T Consensus       300 L~~i~~~~---l~~~~~~~~~~~~~~L~~l-~~~~~~~~~g~g~~~~i~~~~~~~-------------~~~~~~l~~~l~  362 (401)
T TIGR01885       300 LEVLEEEK---LAENAEKLGEIFRDQLKKL-PKPIITEVRGRGLLNAIVIDESKT-------------GRTAWDLCLKLK  362 (401)
T ss_pred             HHHHHhcc---HHHHHHHHHHHHHHHHHhc-cCCceeEEeecCeeEEEEeccCcc-------------hhHHHHHHHHHH
Confidence            44433333   3356667789999999987 333331 11233444443322110             012347889999


Q ss_pred             hCCcEEEEeeecCCcccccEEEEEecCCCCCCHHHHHHHHHHHHHHH
Q psy14299        387 LGGTLMIGYQPLQHRNLHNFFRLVTTCHPASSRQDMDYAIDQIELRG  433 (448)
Q Consensus       387 ~~g~~~~~~~~~~g~~~~~~lRis~~~~~~~t~edid~l~~al~~~~  433 (448)
                      ++| +++.+.   +.   +.+||++  +..+|++||++++++|++..
T Consensus       363 ~~G-v~v~~~---~~---~~lRi~p--~l~~t~~~i~~~l~~l~~~l  400 (401)
T TIGR01885       363 EKG-LLAKPT---HG---NIIRLAP--PLVITEEQLDEGLEIIKKVI  400 (401)
T ss_pred             hCC-EEEEec---CC---CEEEEeC--CccCCHHHHHHHHHHHHHHh
Confidence            999 555442   22   6899999  78999999999999998764

This model describes the final step in the biosynthesis of ornithine from glutamate via the non-acetylated pathway. Ornithine amino transferase takes L-glutamate 5-semialdehyde and makes it into ornithine, which is used in the urea cycle, as well as in the biosynthesis of arginine. This model includes low-GC bacteria and eukaryotic species. The genes from two species are annotated as putative acetylornithine aminotransferases - one from Porphyromonas gingivalis, and the other from Staphylococcus aureus. After homology searching using BLAST it was determined that these two sequences were most closely related to ornithine aminotransferases. This model's seed includes one characterized hit, from Bacillus subtilis.

>PRK04781 histidinol-phosphate aminotransferase; Provisional

Probab=99.61  E-value=5.8e-13  Score=135.02  Aligned_cols=157  Identities=10%  Similarity=-0.014  Sum_probs=106.7

Q ss_pred             cEEEeCcHHHHHHHHHHHHHHhcCCcccccCCCCCCCeEEEecCCCchHHHHHHHHhCCCCCcEEEEecCC--C-CCcCH
Q psy14299          4 KPFLLPGGSISNMYSICLARYRLDPDTKRKGLSHLPPLCMFTSEDSHYSMLKAAHWLGIGMDNVIRVKTNE--R-GQMIC   80 (448)
Q Consensus         4 ~g~~t~ggT~an~~al~~a~~~~~~~~~~~G~~~~~~~~Vl~~~~~H~s~~~~~~~~g~~~~~v~~v~~~~--~-g~id~   80 (448)
                      ..++|+|+++++.+++.+...+             .++.|+++...+..+...++..|.   +++.+|.+.  + ..+|+
T Consensus        78 ~I~~t~G~~~~l~~~~~~~~~~-------------g~~~vlv~~p~y~~~~~~~~~~g~---~~~~v~~~~~~~~~~~d~  141 (364)
T PRK04781         78 QLLIGRGSDEAIDLLVRALCVP-------------GRDAVLVTPPVFGMYAVCARLQNA---PLVEVPLVDGADGFHADV  141 (364)
T ss_pred             HEEEeCCHHHHHHHHHHHhcCC-------------CCCeEEEcCCChHHHHHHHHHcCC---EEEEEecCCCccCCCcCH
Confidence            4689999999987777655432             225677887777777777788888   788998742  2 36788


Q ss_pred             HHHHHHHHHhhhcCCCcEEEEEeccCCccccccCHHHHHHHHHH--cCCEEEEecccccccccccchhhhhcCCCCccEE
Q psy14299         81 SFLEQTIQTSLAEKKIPLFVNATAGTTVLGAFDPLDEIATVCEK--YDLWMHVDACWGGSLIFSEKYSFVLKGINRANSV  158 (448)
Q Consensus        81 e~Le~~l~~~~~~~~~~~lVv~~~~~t~tG~~~~l~~I~~ia~~--~g~~l~VD~A~~~~~~~~~~~~~~~~~~~~aD~~  158 (448)
                      +++++.+..     .++++|++++++|+||.+.|.+++.++++.  +++++++|+++.-.... +.....+.... -=++
T Consensus       142 ~~l~~~~~~-----~~~~lv~l~~p~NPTG~~~~~~~~~~l~~~~~~~~~iI~Deay~~f~~~-~~~~~~~~~~~-~vi~  214 (364)
T PRK04781        142 PAIVAAALA-----SNAKLVFLCSPSNPAGSAIALDQIERALQALQGKALVVVDEAYGEFSDV-PSAVGLLARYD-NLAV  214 (364)
T ss_pred             HHHHHHHhc-----cCCeEEEEcCCCCCCCCCcCHHHHHHHHHhCCCCcEEEEeCcchhhcCC-cchHHHHhhCC-CEEE
Confidence            888765532     257899999999999999999888888875  48999999998744321 11001111111 1156


Q ss_pred             EECCccccCCC-CceEEEEEeccchhh
Q psy14299        159 SWNPHKMLGAP-LQCSILLIKEKGLLH  184 (448)
Q Consensus       159 ~~s~hK~l~~P-~g~G~l~vr~~~~~~  184 (448)
                      +-|+.|.++.| .-+|+++. ++++..
T Consensus       215 ~~SfSK~~gl~GlRvGy~v~-~~~l~~  240 (364)
T PRK04781        215 LRTLSKAHALAAARIGSLIA-NAELIA  240 (364)
T ss_pred             EecChhhcccccceeeeeeC-CHHHHH
Confidence            67899988754 44677665 444443

>PRK09148 aminotransferase; Validated

Probab=99.61  E-value=4.1e-13  Score=138.04  Aligned_cols=158  Identities=10%  Similarity=0.028  Sum_probs=109.8

Q ss_pred             cEEEeCcHHHHHHHHHHHHHHhcCCcccccCCCCCCCeEEEecCCCchHHHHHHHHhCCCCCcEEEEecCCCCCcCHHHH
Q psy14299          4 KPFLLPGGSISNMYSICLARYRLDPDTKRKGLSHLPPLCMFTSEDSHYSMLKAAHWLGIGMDNVIRVKTNERGQMICSFL   83 (448)
Q Consensus         4 ~g~~t~ggT~an~~al~~a~~~~~~~~~~~G~~~~~~~~Vl~~~~~H~s~~~~~~~~g~~~~~v~~v~~~~~g~id~e~L   83 (448)
                      ..++|+|+++++.+++.+.+.              +++.|+++...+..+...+...|.   ++..++.+.++. +++++
T Consensus        94 ~I~it~G~~~al~~~~~~l~~--------------~gd~Vl~~~P~y~~~~~~~~~~g~---~v~~v~~~~~~~-~~~~l  155 (405)
T PRK09148         94 QVVATLGSKEGFANMAQAITA--------------PGDVILCPNPSYPIHAFGFIMAGG---VIRSVPAEPDEE-FFPAL  155 (405)
T ss_pred             cEEEcCChHHHHHHHHHHhcC--------------CCCEEEEcCCCCcccHHHHHhcCC---EEEEEeCCCCCC-CccCH
Confidence            478999999998877766544              567788899999988888888888   788999865543 35566


Q ss_pred             HHHHHHhhhcCCCcEEEEEeccCCccccccCH---HHHHHHHHHcCCEEEEecccccccccccchhh--hhcCCCCccEE
Q psy14299         84 EQTIQTSLAEKKIPLFVNATAGTTVLGAFDPL---DEIATVCEKYDLWMHVDACWGGSLIFSEKYSF--VLKGINRANSV  158 (448)
Q Consensus        84 e~~l~~~~~~~~~~~lVv~~~~~t~tG~~~~l---~~I~~ia~~~g~~l~VD~A~~~~~~~~~~~~~--~~~~~~~aD~~  158 (448)
                      ++.++..   ..++++|+++.++|+||.+.+.   ++|.++|++||+++++|++|+...+.......  .+.+.....++
T Consensus       156 ~~~~~~~---~~~~~~v~l~~P~NPtG~~~s~~~l~~l~~~a~~~~~~ii~De~Y~~~~~~~~~~~s~~~~~~~~~~~i~  232 (405)
T PRK09148        156 ERAVRHS---IPKPIALIVNYPSNPTAYVADLDFYKDVVAFAKKHDIIILSDLAYSEIYFDGNPPPSVLQVPGAKDVTVE  232 (405)
T ss_pred             HHHHhhc---cccceEEEEeCCCCCCCcCCCHHHHHHHHHHHHHcCeEEEEeccchhhhcCCCCCCChhhCCCccCcEEE
Confidence            6666432   1357899999999999998885   67889999999999999998854331110000  01111112245


Q ss_pred             EECCccccCCC-CceEEEEEeccchh
Q psy14299        159 SWNPHKMLGAP-LQCSILLIKEKGLL  183 (448)
Q Consensus       159 ~~s~hK~l~~P-~g~G~l~vr~~~~~  183 (448)
                      +.|+.|.++.| .-+|+++. ++.++
T Consensus       233 ~~SfSK~~~~pGlR~G~~v~-~~~~i  257 (405)
T PRK09148        233 FTSMSKTFSMAGWRMGFAVG-NERLI  257 (405)
T ss_pred             EeccccccCCcchheeeeeC-CHHHH
Confidence            78899988755 23666654 43333

>PRK07503 methionine gamma-lyase; Provisional

Probab=99.61  E-value=2.6e-13  Score=139.25  Aligned_cols=145  Identities=14%  Similarity=0.086  Sum_probs=108.8

Q ss_pred             cEEEeCcHHHHHHHHHHHHHHhcCCcccccCCCCCCCeEEEecCCCchHHH----HHHHHhCCCCCcEEEEecCCCCCcC
Q psy14299          4 KPFLLPGGSISNMYSICLARYRLDPDTKRKGLSHLPPLCMFTSEDSHYSML----KAAHWLGIGMDNVIRVKTNERGQMI   79 (448)
Q Consensus         4 ~g~~t~ggT~an~~al~~a~~~~~~~~~~~G~~~~~~~~Vl~~~~~H~s~~----~~~~~~g~~~~~v~~v~~~~~g~id   79 (448)
                      ..+++++|+.++.+++.....              +++.|+++...|....    ..++..|+   ++..++.+     |
T Consensus        82 ~~i~~~sG~~Al~~~l~~ll~--------------~Gd~Viv~~~~y~~t~~~~~~~~~~~G~---~v~~vd~~-----d  139 (403)
T PRK07503         82 AAVALASGMGAITATLWTLLR--------------PGDEVIVDQTLYGCTFAFLHHGLGEFGV---TVRHVDLT-----D  139 (403)
T ss_pred             cEEEEcCHHHHHHHHHHHHcC--------------CCCEEEEccCccchHHHHHHHHHhhCCE---EEEEeCCC-----C
Confidence            367888999998777765422              6677888887775433    33445566   67777664     7


Q ss_pred             HHHHHHHHHHhhhcCCCcEEEEEeccCCccccccCHHHHHHHHHHcCCEEEEecccccccccccchhhhhcCCCCccEEE
Q psy14299         80 CSFLEQTIQTSLAEKKIPLFVNATAGTTVLGAFDPLDEIATVCEKYDLWMHVDACWGGSLIFSEKYSFVLKGINRANSVS  159 (448)
Q Consensus        80 ~e~Le~~l~~~~~~~~~~~lVv~~~~~t~tG~~~~l~~I~~ia~~~g~~l~VD~A~~~~~~~~~~~~~~~~~~~~aD~~~  159 (448)
                      ++++++++++      ++++|++.+++|++|.+.|+++|+++|+++|+++++|++|+.+....+     + +. .+|+++
T Consensus       140 ~~~l~~~i~~------~tklV~le~p~NPtG~~~di~~I~~la~~~gi~lIvD~a~a~~~~~~~-----l-~~-g~Di~v  206 (403)
T PRK07503        140 PAALKAAISD------KTRMVYFETPANPNMRLVDIAAVAEIAHGAGAKVVVDNTYCTPYLQRP-----L-EL-GADLVV  206 (403)
T ss_pred             HHHHHHhcCc------cCcEEEEeCCCCCCCeeeCHHHHHHHHHHcCCEEEEECCCcccccCCc-----h-hh-CCCEEE
Confidence            9999998854      478999999999999999999999999999999999999986543211     1 11 479999


Q ss_pred             ECCccccCCCCc--eEEEEEeccchhh
Q psy14299        160 WNPHKMLGAPLQ--CSILLIKEKGLLH  184 (448)
Q Consensus       160 ~s~hK~l~~P~g--~G~l~vr~~~~~~  184 (448)
                      .|++|++++|.+  .|+++ .++++..
T Consensus       207 ~S~tK~l~g~gd~~gG~v~-~~~~l~~  232 (403)
T PRK07503        207 HSATKYLGGHGDITAGLVV-GGKALAD  232 (403)
T ss_pred             ccccccccCCCceeEEEEE-cCHHHHH
Confidence            999999998865  56665 4544433

>PRK08175 aminotransferase; Validated

Probab=99.61  E-value=3.7e-13  Score=137.94  Aligned_cols=157  Identities=11%  Similarity=0.037  Sum_probs=110.1

Q ss_pred             cEEEeCcHHHHHHHHHHHHHHhcCCcccccCCCCCCCeEEEecCCCchHHHHHHHHhCCCCCcEEEEecCCCCCcCHHHH
Q psy14299          4 KPFLLPGGSISNMYSICLARYRLDPDTKRKGLSHLPPLCMFTSEDSHYSMLKAAHWLGIGMDNVIRVKTNERGQMICSFL   83 (448)
Q Consensus         4 ~g~~t~ggT~an~~al~~a~~~~~~~~~~~G~~~~~~~~Vl~~~~~H~s~~~~~~~~g~~~~~v~~v~~~~~g~id~e~L   83 (448)
                      ..++|+|+++++.+.+.....              +++.|+++...|......++..|.   ++..++.++++ .+++++
T Consensus        93 ~i~~t~G~~~~l~~~~~~~~~--------------~gd~Vlv~~P~y~~~~~~~~~~g~---~~~~v~~~~~~-~~~~~l  154 (395)
T PRK08175         93 EAIVTIGSKEGLAHLMLATLD--------------HGDTVLVPNPSYPIHIYGAVIAGA---QVRSVPLVEGV-DFFNEL  154 (395)
T ss_pred             cEEEccCcHHHHHHHHHHhCC--------------CCCEEEEcCCCCcchHHHHHHcCC---eEEEEecccCC-CcHHHH
Confidence            478899999997665544433              567899999999988888888888   78889887544 358889


Q ss_pred             HHHHHHhhhcCCCcEEEEEeccCCccccccCH---HHHHHHHHHcCCEEEEecccccccccccchhhhhcCC---CCccE
Q psy14299         84 EQTIQTSLAEKKIPLFVNATAGTTVLGAFDPL---DEIATVCEKYDLWMHVDACWGGSLIFSEKYSFVLKGI---NRANS  157 (448)
Q Consensus        84 e~~l~~~~~~~~~~~lVv~~~~~t~tG~~~~l---~~I~~ia~~~g~~l~VD~A~~~~~~~~~~~~~~~~~~---~~aD~  157 (448)
                      +++++..   ..++++|++++++|+||...+.   ++|.++|++||+++++|.+++..... +.....+..+   ....+
T Consensus       155 ~~~l~~~---~~~~~~v~i~~p~NPtG~~~~~~~~~~i~~~a~~~~i~ii~De~y~~l~~~-~~~~~~~~~~~~~~~~~i  230 (395)
T PRK08175        155 ERAIRES---YPKPKMMILGFPSNPTAQCVELEFFEKVVALAKRYDVLVVHDLAYADIVYD-GWKAPSIMQVPGAKDVAV  230 (395)
T ss_pred             HHHHhhc---cCCceEEEEeCCCCCCCCCCCHHHHHHHHHHHHHcCcEEEEecchHhhccC-CCCCcchhcCCCcccCEE
Confidence            9888642   2357889999999999988776   78999999999999999998754321 1000111111   11225


Q ss_pred             EEECCccccCCCC-ceEEEEEeccchh
Q psy14299        158 VSWNPHKMLGAPL-QCSILLIKEKGLL  183 (448)
Q Consensus       158 ~~~s~hK~l~~P~-g~G~l~vr~~~~~  183 (448)
                      ++.++.|.++.|. -+|+++. ++++.
T Consensus       231 ~~~S~SK~~g~pGlRiG~~~~-~~~l~  256 (395)
T PRK08175        231 EFFTLSKSYNMAGWRIGFMVG-NPELV  256 (395)
T ss_pred             EEeeccccccCcchhheeeeC-CHHHH
Confidence            5688999987663 2566654 44433

>PRK06084 O-acetylhomoserine aminocarboxypropyltransferase; Validated

Probab=99.61  E-value=4.1e-13  Score=138.53  Aligned_cols=140  Identities=12%  Similarity=0.060  Sum_probs=104.2

Q ss_pred             cEEEeCcHHHHHHHHHHHHHHhcCCcccccCCCCCCCeEEEecCCCchHHHHHHHH----hCCCCCcEEEEecCCCCCcC
Q psy14299          4 KPFLLPGGSISNMYSICLARYRLDPDTKRKGLSHLPPLCMFTSEDSHYSMLKAAHW----LGIGMDNVIRVKTNERGQMI   79 (448)
Q Consensus         4 ~g~~t~ggT~an~~al~~a~~~~~~~~~~~G~~~~~~~~Vl~~~~~H~s~~~~~~~----~g~~~~~v~~v~~~~~g~id   79 (448)
                      ..+++++|+.++..++.+...              +++.|+++...+......+..    .|+   .+..++.     .|
T Consensus        75 ~~l~~ssG~~Ai~~al~al~~--------------~Gd~Vl~~~~~Y~~t~~~~~~~l~~~gi---~v~~~d~-----~d  132 (425)
T PRK06084         75 GALAVASGMAAITYAIQTIAE--------------AGDNIVSVAKLYGGTYNLLAHTLPRIGI---ETRFAAH-----DD  132 (425)
T ss_pred             ceeEehhHHHHHHHHHHHHhC--------------CCCEEEEeCCCcchHHHHHHHhccccee---EEEEECC-----CC
Confidence            468899999998888876654              456677777766644444332    233   4444543     38


Q ss_pred             HHHHHHHHHHhhhcCCCcEEEEEeccCCccccccCHHHHHHHHHHcCCEEEEecccccccccccchhhhhcCCCCccEEE
Q psy14299         80 CSFLEQTIQTSLAEKKIPLFVNATAGTTVLGAFDPLDEIATVCEKYDLWMHVDACWGGSLIFSEKYSFVLKGINRANSVS  159 (448)
Q Consensus        80 ~e~Le~~l~~~~~~~~~~~lVv~~~~~t~tG~~~~l~~I~~ia~~~g~~l~VD~A~~~~~~~~~~~~~~~~~~~~aD~~~  159 (448)
                      ++++++++++      ++++|+++.++|++|.+.|+++|.++||++|++++||++++.+....+     + . .++|+++
T Consensus       133 ~e~le~ai~~------~tklV~lesp~NPtG~v~dl~~I~~la~~~~i~vVvD~a~a~~~~~~p-----~-~-~gaDivv  199 (425)
T PRK06084        133 IAALEALIDE------RTKAVFCESIGNPAGNIIDIQALADAAHRHGVPLIVDNTVATPVLCRP-----F-E-HGADIVV  199 (425)
T ss_pred             HHHHHHHhcc------CCcEEEEeCCCCCCCeecCHHHHHHHHHHcCCEEEEECCCcccccCCh-----h-h-cCCCEEE
Confidence            9999999865      478999999999999999999999999999999999999986654211     1 1 1489999


Q ss_pred             ECCccccCCCCc-eEEEEEe
Q psy14299        160 WNPHKMLGAPLQ-CSILLIK  178 (448)
Q Consensus       160 ~s~hK~l~~P~g-~G~l~vr  178 (448)
                      .|++|++++|.. .|.+++.
T Consensus       200 ~S~tK~l~G~g~~~gG~v~~  219 (425)
T PRK06084        200 HSLTKYIGGHGTSIGGIVVD  219 (425)
T ss_pred             ECchhcccccccceeEEEEe
Confidence            999999998753 3444443

>COG0403 GcvP Glycine cleavage system protein P (pyridoxal-binding), N-terminal domain [Amino acid transport and metabolism]

Probab=99.61  E-value=2.5e-13  Score=134.17  Aligned_cols=271  Identities=15%  Similarity=0.165  Sum_probs=184.2

Q ss_pred             CeEEEecCCCchHHHHHHHHh--CCCCCcEEEEecCCCCCcCHHHHHHHHHHhhhcCCCcEEEEEeccCCccc-cccCHH
Q psy14299         40 PLCMFTSEDSHYSMLKAAHWL--GIGMDNVIRVKTNERGQMICSFLEQTIQTSLAEKKIPLFVNATAGTTVLG-AFDPLD  116 (448)
Q Consensus        40 ~~~Vl~~~~~H~s~~~~~~~~--g~~~~~v~~v~~~~~g~id~e~Le~~l~~~~~~~~~~~lVv~~~~~t~tG-~~~~l~  116 (448)
                      ...++++...|+......+-.  +.+. ++...+.+     |.++|++. ++     ..+..|++..+++ .| ...|++
T Consensus       164 ~~~~~V~~~vhpqt~~Vl~Tra~~~g~-~i~~~~~~-----d~~~l~~~-~~-----~~~~gv~vQyP~~-~G~~~~d~~  230 (450)
T COG0403         164 RNKFLVPKDVHPQTLDVLRTRAEGLGI-EIEVVDAD-----DLDDLESA-DD-----GDVFGVLVQYPNT-FGIVEEDLR  230 (450)
T ss_pred             CceEEecCCCCHHHHHHHHhhcccCce-EEEEeccc-----hhhhhhhc-cc-----cCeEEEEEecCCC-CCccchhHH
Confidence            456999999999988877633  3322 56666655     78888887 33     2477899999887 77 778899


Q ss_pred             HHHHHHHHcCCEEEEec-ccccccccccchhhhhcCCCCccEEEECCccc-----cCCCCceEEEEEeccchhhhhccCC
Q psy14299        117 EIATVCEKYDLWMHVDA-CWGGSLIFSEKYSFVLKGINRANSVSWNPHKM-----LGAPLQCSILLIKEKGLLHQANATA  190 (448)
Q Consensus       117 ~I~~ia~~~g~~l~VD~-A~~~~~~~~~~~~~~~~~~~~aD~~~~s~hK~-----l~~P~g~G~l~vr~~~~~~~~~~~~  190 (448)
                      +|.+.+|++|+.++|=. --+.+.+..|       |--++|+++.+++.+     +|+|. +|+|.++++- .    +..
T Consensus       231 ~l~~~~h~~~al~~v~aDplaL~LL~pP-------Ge~GADIvvG~~QrfGvPmgfGGPh-ag~fA~~~~~-~----R~m  297 (450)
T COG0403         231 ALIEAAHSAGALVIVAADPLALGLLKPP-------GEFGADIVVGSAQRFGVPMGFGGPH-AGYFAVKDEF-K----RQM  297 (450)
T ss_pred             HHHHHHhhcCCEEEEEechhHhhccCCc-------cccCCceEEecCcccCCCcCCCCcc-eeeeeEhHhH-h----hcC
Confidence            99999999999887643 1122222111       112589999999973     34454 7888887752 2    234


Q ss_pred             cccccccCcccccccCCCCCcccCCCCchhHHHHHHHHHhChHHHHHH---HHHhhhhccCCCccchhhhhhhhhhhhhh
Q psy14299        191 ATYLFQQDKFYDVSFDTGDKSVQCGRKVDAFKLWLMWKARGNLGFRHF---VDNAVDCSRGSMTFSTLLCFDLQGLLHQA  267 (448)
Q Consensus       191 ~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~g~~~~---i~~~~~~~~~~~~~~~~~~~~~~~~~~~~  267 (448)
                      |+-+-..+..                            ..|..+++=.   =++++++.|+.|+|||             
T Consensus       298 PGRlVG~S~D----------------------------~~G~~A~rLaLQTREQHIRReKATSNICT-------------  336 (450)
T COG0403         298 PGRLVGVSVD----------------------------AAGKRAFRLALQTREQHIRREKATSNICT-------------  336 (450)
T ss_pred             CCceeeeeec----------------------------CCCCchhhhhHHHHHHHHhhhccchhhhH-------------
Confidence            4544332211                            1122222222   2688999999999999             


Q ss_pred             hhhhhhhhhccccccccccCCCCCccccccchhhHHHHHHHHHhcCccHHHHHHHHHHHHHHHHHHhhcCC-CeEEeccC
Q psy14299        268 NATAATYLFQQDKFYDVSFDTGDKSVQCGRKVDAFKLWLMWKARGNLGFRHFVDNAVDCSRYFLSQISQRP-GFRLVIPE  346 (448)
Q Consensus       268 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~~l~~~~~~~L~~~p-g~~l~~~~  346 (448)
                      |++.+                            ++.......+.|.+|+.++..+.++++.++.++|+++. |++++ .+
T Consensus       337 nQaLl----------------------------A~~As~y~~~hGp~GLk~iA~r~~~~a~~la~~L~~~~~g~~~~-~~  387 (450)
T COG0403         337 NQALL----------------------------ALAASMYAVYHGPQGLKEIAERIHRLAAYLAAGLKEIGAGVELV-FD  387 (450)
T ss_pred             HHHHH----------------------------HHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHHhhcCCceEec-cc
Confidence            44433                            56677788899999999999999999999999999763 68987 66


Q ss_pred             CceeeEEEEeeccCCCccccchhhhhhhhhhhHHHHHHHHhCCcEEEEeeecCCcccccEEEEEecCCCCCCHHHHHHHH
Q psy14299        347 FQCTNICFWFIPVSLRDKVEDETWWSTLSKVAPRIKEKLVLGGTLMIGYQPLQHRNLHNFFRLVTTCHPASSRQDMDYAI  426 (448)
Q Consensus       347 ~~~~~v~f~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~L~~~g~~~~~~~~~~g~~~~~~lRis~~~~~~~t~edid~l~  426 (448)
                      ..+..+.+++..                 .....+.++....|+ -+  .....    ..+-+++  ...+|++||+.|+
T Consensus       388 ~fFdt~~v~~~~-----------------~~~~~l~~~~~~~G~-~L--~~~~~----~~~~ia~--tEt~t~~~i~~l~  441 (450)
T COG0403         388 HFFDTFTVRVPE-----------------EVAEALLAAAIAGGI-NL--RRVDA----DTVLIAL--TETTTKEDIDALV  441 (450)
T ss_pred             cceeeEEEecch-----------------hHHHHHHHHHHhcCC-ce--eeecC----CceEEEe--ecccCHHHHHHHH
Confidence            667777776421                 123356666666662 11  11112    3566888  6889999999999


Q ss_pred             HHHHHH
Q psy14299        427 DQIELR  432 (448)
Q Consensus       427 ~al~~~  432 (448)
                      +++...
T Consensus       442 ~~~~~~  447 (450)
T COG0403         442 AAFGGV  447 (450)
T ss_pred             HHHhhh
Confidence            998764

>PF01041 DegT_DnrJ_EryC1: DegT/DnrJ/EryC1/StrS aminotransferase family; InterPro: IPR000653 This entry represents a family that are probably all pyridoxal-phosphate-dependent aminotransferase enzymes with a variety of molecular functions

Probab=99.60  E-value=2.2e-13  Score=137.99  Aligned_cols=151  Identities=13%  Similarity=0.150  Sum_probs=108.7

Q ss_pred             cEEEeCcHHHHHHHHHHHHHHhcCCcccccCCCCCCCeEEEecCCCchHHHHHHHHhCCCCCcEEEEecC-CCCCcCHHH
Q psy14299          4 KPFLLPGGSISNMYSICLARYRLDPDTKRKGLSHLPPLCMFTSEDSHYSMLKAAHWLGIGMDNVIRVKTN-ERGQMICSF   82 (448)
Q Consensus         4 ~g~~t~ggT~an~~al~~a~~~~~~~~~~~G~~~~~~~~Vl~~~~~H~s~~~~~~~~g~~~~~v~~v~~~-~~g~id~e~   82 (448)
                      .++.+++||.|+.+++.++--+             +++.|+++..+..+...+....|.   .++.++++ +++.||++.
T Consensus        42 ~~~~~~sgt~Al~~al~~l~~~-------------~gdeVi~p~~t~~~~~~ai~~~G~---~pv~~Di~~~~~~id~~~  105 (363)
T PF01041_consen   42 YAVAVSSGTSALHLALRALGLG-------------PGDEVIVPAYTFPATASAILWAGA---EPVFVDIDPETLNIDPEA  105 (363)
T ss_dssp             EEEEESSHHHHHHHHHHHTTGG-------------TTSEEEEESSS-THHHHHHHHTT----EEEEE-BETTTSSB-HHH
T ss_pred             eEEEeCChhHHHHHHHHhcCCC-------------cCceEecCCCcchHHHHHHHHhcc---EEEEEeccCCcCCcCHHH
Confidence            4789999999999998774332             778899999999999999999999   88999998 678999999


Q ss_pred             HHHHHHHhhhcCCCcEEEEEeccCCccccccCHHHHHHHHHHcCCEEEEecccccccccccchhhhhcCCCCccEEEECC
Q psy14299         83 LEQTIQTSLAEKKIPLFVNATAGTTVLGAFDPLDEIATVCEKYDLWMHVDACWGGSLIFSEKYSFVLKGINRANSVSWNP  162 (448)
Q Consensus        83 Le~~l~~~~~~~~~~~lVv~~~~~t~tG~~~~l~~I~~ia~~~g~~l~VD~A~~~~~~~~~~~~~~~~~~~~aD~~~~s~  162 (448)
                      +++++.+      ++++|+++|   ..|...|+++|.++|+++|++++-|+||+.|...-...   + | ...|+.++|+
T Consensus       106 ~~~~i~~------~t~ai~~~h---~~G~~~d~~~i~~~~~~~~i~lIeD~a~a~g~~~~g~~---~-G-~~gd~~~fSf  171 (363)
T PF01041_consen  106 LEKAITP------KTKAILVVH---LFGNPADMDAIRAIARKHGIPLIEDAAQAFGARYKGRP---V-G-SFGDIAIFSF  171 (363)
T ss_dssp             HHHHHHT------TEEEEEEE----GGGB---HHHHHHHHHHTT-EEEEE-TTTTT-EETTEE---T-T-SSSSEEEEES
T ss_pred             HHHHhcc------CccEEEEec---CCCCcccHHHHHHHHHHcCCcEEEccccccCceeCCEe---c-c-CCCCceEecC
Confidence            9999986      478888876   46777899999999999999999999999987643221   1 1 1347777776


Q ss_pred             c--cccCCCCceEEEEEeccchhhh
Q psy14299        163 H--KMLGAPLQCSILLIKEKGLLHQ  185 (448)
Q Consensus       163 h--K~l~~P~g~G~l~vr~~~~~~~  185 (448)
                      |  |.+.+. ..|+++++++++...
T Consensus       172 ~~~K~i~~g-eGG~v~~~~~~~~~~  195 (363)
T PF01041_consen  172 HPTKIITTG-EGGAVVTNDPELAER  195 (363)
T ss_dssp             STTSSS-SS-S-EEEEESTHHHHHH
T ss_pred             CCCCCCcCC-CCeeEEecHHHHHHH
Confidence            5  877433 346677777654433

The family includes StsA P72454 from SWISSPROT, StsC P77952 from SWISSPROT and StsS []. The aminotransferase activity was demonstrated for purified StsC protein as the L-glutamine:scyllo-inosose aminotransferase 2.6.1.50 from EC, which catalyses the first amino transfer in the biosynthesis of the streptidine subunit of streptomycin [].; PDB: 2FNI_A 2FNU_A 2FN6_A 2PO3_A 3UWC_A 1O61_B 1O62_B 1O69_B 1B9I_A 1B9H_A ....

>cd00617 Tnase_like Tryptophanase family (Tnase)

Probab=99.60  E-value=7e-13  Score=136.46  Aligned_cols=161  Identities=16%  Similarity=0.157  Sum_probs=110.4

Q ss_pred             cEEEeCcHHHHHHHHHHHHHHhcCCcccccCCCCCCCeEEEecCCCch-HHHHHHHHhCCCCCcEEEEecCC--------
Q psy14299          4 KPFLLPGGSISNMYSICLARYRLDPDTKRKGLSHLPPLCMFTSEDSHY-SMLKAAHWLGIGMDNVIRVKTNE--------   74 (448)
Q Consensus         4 ~g~~t~ggT~an~~al~~a~~~~~~~~~~~G~~~~~~~~Vl~~~~~H~-s~~~~~~~~g~~~~~v~~v~~~~--------   74 (448)
                      .+++|+|||+|+.+++.+..+              |++.| ++ ..|+ +......+.|.   ..+.+++++        
T Consensus        70 ~vv~t~~Gt~Al~la~~al~~--------------pGD~V-~~-~~~f~~~~~~i~~~Ga---~pv~v~i~~~~~~~~~~  130 (431)
T cd00617          70 HIIPTHQGRGAENILFSILLK--------------PGRTV-PS-NMHFDTTRGHIEANGA---VPVDLVIDEAHDAQELI  130 (431)
T ss_pred             eEEEcCCHHHHHHHHHHHhCC--------------CCCEE-cc-CCcccchHHHHHhCCC---EeEEEeccccccccccc
Confidence            468999999999998876644              56666 34 4555 45556677787   677777752        


Q ss_pred             --CCCcCHHHHHHHHHHhhhcCCCcEEEEEeccCCcc-cccc---CHHHHHHHHHHcCCEEEEecccccccc-cc----c
Q psy14299         75 --RGQMICSFLEQTIQTSLAEKKIPLFVNATAGTTVL-GAFD---PLDEIATVCEKYDLWMHVDACWGGSLI-FS----E  143 (448)
Q Consensus        75 --~g~id~e~Le~~l~~~~~~~~~~~lVv~~~~~t~t-G~~~---~l~~I~~ia~~~g~~l~VD~A~~~~~~-~~----~  143 (448)
                        .|.+|+++|+++|.+.  ...++++|+++.++|++ |...   ++++|.++|++||+++|.|+|+..+.. +.    +
T Consensus       131 pf~gniD~e~Le~~I~~~--~~~~~~~I~v~~p~N~~gG~~~s~~~l~~i~eia~~~gi~li~DaAr~~~na~~i~~r~~  208 (431)
T cd00617         131 PFKGNIDVAKLEKLIDEV--GAENIPYIVLTITNNTAGGQPVSMANLREVRELAHKYGIPVVLDAARFAENAYFIKEREE  208 (431)
T ss_pred             CCCCCcCHHHHHHHhCcc--cCCCccEEEEECCcCCCCCccCCHHHHHHHHHHHHHcCCEEEEEchhhHhhhhhhhcccc
Confidence              3569999999999752  11247789999999987 7665   567889999999999999999775421 11    1


Q ss_pred             chh-hhh-----cCCCCccEEEECCccccCCCCceEEEEEeccchhhhh
Q psy14299        144 KYS-FVL-----KGINRANSVSWNPHKMLGAPLQCSILLIKEKGLLHQA  186 (448)
Q Consensus       144 ~~~-~~~-----~~~~~aD~~~~s~hK~l~~P~g~G~l~vr~~~~~~~~  186 (448)
                      ... ..+     .-.+.+|++++|+||.+++|. .|+++.+++++....
T Consensus       209 g~~~~si~ei~~e~~s~sd~~~mS~~K~~~~~~-GG~i~~~d~~l~~~~  256 (431)
T cd00617         209 GYRDKSIAEIAREMFSYADGCTMSAKKDGLVNI-GGFLALRDDELYEEA  256 (431)
T ss_pred             cccCCCHHHHHHHhhccCCEEEEEeecCCCCcc-ceEEEeCcHHHHHHH
Confidence            100 000     011358999999999988876 345556554454443

This family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). The major groups in this CD correspond to tryptophanase (Tnase) and tyrosine phenol-lyase (TPL). Tnase and TPL are active as tetramers and catalyze beta-elimination reactions. Tnase catalyzes degradation of L-tryptophan to yield indole, pyruvate and ammonia and TPL catalyzes degradation of L-tyrosine to yield phenol, pyruvate and ammonia.

>PF00464 SHMT: Serine hydroxymethyltransferase; InterPro: IPR001085 Synonym(s): Serine hydroxymethyltransferase, Serine aldolase, Threonine aldolase Serine hydroxymethyltransferase (SHMT) is a pyridoxal phosphate (PLP) dependent enzyme and belongs to the aspartate aminotransferase superfamily (fold type I) []

Probab=99.59  E-value=8.5e-14  Score=140.48  Aligned_cols=291  Identities=15%  Similarity=0.168  Sum_probs=163.6

Q ss_pred             eCcHHHHHHHHHHHHHHhcCCcccccCCCCCCCeEEEecCCC---chHHHHHHHH-------hCCCCCcEEEEecC-CCC
Q psy14299          8 LPGGSISNMYSICLARYRLDPDTKRKGLSHLPPLCMFTSEDS---HYSMLKAAHW-------LGIGMDNVIRVKTN-ERG   76 (448)
Q Consensus         8 t~ggT~an~~al~~a~~~~~~~~~~~G~~~~~~~~Vl~~~~~---H~s~~~~~~~-------~g~~~~~v~~v~~~-~~g   76 (448)
                      ..+|+.||+.+..+..+              |++.|+.-+..   |.|--.....       ...   ++...+++ +++
T Consensus        92 p~SGs~An~av~~aLl~--------------pGD~Im~l~l~~GGHlshg~~~~~~~~~~~~~~~---~~~~y~~d~~~~  154 (399)
T PF00464_consen   92 PHSGSQANLAVYMALLK--------------PGDTIMGLSLPHGGHLSHGSSVNFKKISASGLYF---ESVPYPVDPDTG  154 (399)
T ss_dssp             -SSHHHHHHHHHHHHT---------------TT-EEEEEEGGGT--GGGT-TTSHSBSSHHHHHS---EEEEEEB-TTTS
T ss_pred             cCCchHHHHHHHHHHHh--------------hcCcEEecChhhcccccccccccccccccccceE---EEEeeeeecCCC
Confidence            46899999888877765              55555544333   3332221111       123   46677887 578


Q ss_pred             CcCHHHHHHHHHHhhhcCCCcEEEEEeccCCccccccCHHHHHHHHHHcCCEEEEecccccccccccchhhhhcCCCCcc
Q psy14299         77 QMICSFLEQTIQTSLAEKKIPLFVNATAGTTVLGAFDPLDEIATVCEKYDLWMHVDACWGGSLIFSEKYSFVLKGINRAN  156 (448)
Q Consensus        77 ~id~e~Le~~l~~~~~~~~~~~lVv~~~~~t~tG~~~~l~~I~~ia~~~g~~l~VD~A~~~~~~~~~~~~~~~~~~~~aD  156 (448)
                      .||.+++++.+++.     +|++|++....+  -...|++++.+||++.|+++++|.||-+|.......+.-   ++.+|
T Consensus       155 ~ID~d~l~~~a~~~-----kPklIi~G~S~y--~~~~d~~~~reIad~vga~l~~D~sH~~GLIa~g~~~~P---~~~AD  224 (399)
T PF00464_consen  155 LIDYDELEKLAKEH-----KPKLIICGASSY--PRPIDFKRFREIADEVGAYLMADISHIAGLIAGGLFPNP---FPYAD  224 (399)
T ss_dssp             SB-HHHHHHHHHHH-------SEEEEE-SST--SS---HHHHHHHHHHTT-EEEEE-TTTHHHHHTTSS--G---CCTSS
T ss_pred             eECHHHHHHHHhhc-----CCCEEEECchhc--cCccCHHHHHHHHHhcCcEEEecccccccceehheecCc---cccce
Confidence            99999999999873     688888866443  456889999999999999999999999887755444332   33589


Q ss_pred             EEEECCccccCCCCceEEEEEeccchhhhhccCCcccccccCcccccccCCCCCcccCCCCchhHHHHHHHHHhChHHHH
Q psy14299        157 SVSWNPHKMLGAPLQCSILLIKEKGLLHQANATAATYLFQQDKFYDVSFDTGDKSVQCGRKVDAFKLWLMWKARGNLGFR  236 (448)
Q Consensus       157 ~~~~s~hK~l~~P~g~G~l~vr~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~g~~  236 (448)
                      +++.+.||.|.+|.| |++++++...  .. .....-                                     -...+.
T Consensus       225 vvt~sThKtl~GPrg-giI~~~~~~~--~~-~~~~~~-------------------------------------~~~~l~  263 (399)
T PF00464_consen  225 VVTGSTHKTLRGPRG-GIILTNKGSK--NV-DKKGKE-------------------------------------IDEELA  263 (399)
T ss_dssp             EEEEESSGGG-SSS--EEEEES-SEE--EE--TTS-E-------------------------------------EEHHHH
T ss_pred             EEEeeccccccccCc-eEEEEcCCcc--cc-CCcccc-------------------------------------cHHHHH
Confidence            999999999999985 6666652210  00 000000                                     001112


Q ss_pred             HHHHHhhhhccCCCccchhhhhhhhhhhhhhhhhhhhhhhccccccccccCCCCCccccccch-hhHHHHHHHHHhcCcc
Q psy14299        237 HFVDNAVDCSRGSMTFSTLLCFDLQGLLHQANATAATYLFQQDKFYDVSFDTGDKSVQCGRKV-DAFKLWLMWKARGNLG  315 (448)
Q Consensus       237 ~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~G  315 (448)
                      +.|++.+-=                                              .++.++.. -+.++++++.......
T Consensus       264 ~~I~~avfP----------------------------------------------~~qg~~h~~~iaalAval~ea~~~~  297 (399)
T PF00464_consen  264 EKIDSAVFP----------------------------------------------GLQGGPHMHRIAALAVALKEALSPE  297 (399)
T ss_dssp             HHHHHHHTT----------------------------------------------TT-SS--HHHHHHHHHHHHHHTSHH
T ss_pred             HHhccccCC----------------------------------------------CcccCcchhHHHHHHHHHhcccCHH
Confidence            222211100                                              00011111 1234456677766667


Q ss_pred             HHHHHHHHHHHHHHHHHHhhcCCCeEEeccCCceeeEEEEeeccCCCccccchhhhhhhhhhhHHHHHHHHhCCcEEEEe
Q psy14299        316 FRHFVDNAVDCSRYFLSQISQRPGFRLVIPEFQCTNICFWFIPVSLRDKVEDETWWSTLSKVAPRIKEKLVLGGTLMIGY  395 (448)
Q Consensus       316 ~~~~~~~~~~l~~~~~~~L~~~pg~~l~~~~~~~~~v~f~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~L~~~g~~~~~~  395 (448)
                      +++..++..++++.|.+.|.+. |++++..-.+.+.+.+.+.+.+++               ..+..+.|.+.| +.+..
T Consensus       298 fk~Ya~qVv~NAk~La~~L~~~-G~~v~~ggTd~H~vlvd~~~~~~~---------------g~~a~~~Le~~g-I~vnk  360 (399)
T PF00464_consen  298 FKEYAKQVVKNAKALAEALQER-GFKVVTGGTDNHQVLVDLRSFGID---------------GKEAEKALEEAG-IIVNK  360 (399)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHT-T-EEGGGS-SSSEEEEEGGGGTS----------------HHHHHHHHHHTT-EE-EE
T ss_pred             HHHHHHHHHHHHHHHHHHHhhC-CcEEEECCCCCCeEEEEecccccc---------------hHHHHHHHHhcC-eeecc
Confidence            7888999999999999999998 999984345567777765444433               135667777888 55554


Q ss_pred             eecCCc---ccccEEEEEecC--CCCCCHHHHHHHHHHH
Q psy14299        396 QPLQHR---NLHNFFRLVTTC--HPASSRQDMDYAIDQI  429 (448)
Q Consensus       396 ~~~~g~---~~~~~lRis~~~--~~~~t~edid~l~~al  429 (448)
                      ..+.+.   ..+..||++...  .-...++|+..+.+.|
T Consensus       361 n~iP~d~~~~~~sGlRlGT~~lT~rG~~e~dm~~iA~~I  399 (399)
T PF00464_consen  361 NTIPGDRSPFVPSGLRLGTPALTRRGMKEEDMKEIAELI  399 (399)
T ss_dssp             E--TTTSTTTT-SEEEEESHHHHHTT--HHHHHHHHHHH
T ss_pred             cccCCCCCCCCCCEEEECCHHHHhCCCCHHHHHHHHhhC
Confidence            433221   113689999830  1123456776666543

The pyridoxal-P group is attached to a lysine residue around which the sequence is highly conserved in all forms of the enzyme []. The enzyme carries out interconversion of serine and glycine using PLP as the cofactor. SHMT catalyses the transfer of a hydroxymethyl group from N5, N10- methylene tetrahydrofolate to glycine, resulting in the formation of serine and tetrahydrofolate. Both eukaryotic and prokaryotic SHMT enzymes form tight obligate homodimers and the mammalian enzyme forms a homotetramer [, ]. PLP dependent enzymes were previously classified into alpha, beta and gamma classes, based on the chemical characteristics (carbon atom involved) of the reaction they catalysed. The availability of several structures allowed a comprehensive analysis of the evolutionary classification of PLP dependent enzymes, and it was found that the functional classification did not always agree with the evolutionary history of these enzymes. Structure and sequence analysis has revealed that the PLP dependent enzymes can be classified into four major groups of different evolutionary origin: aspartate aminotransferase superfamily (fold type I), tryptophan synthase beta superfamily (fold type II), alanine racemase superfamily (fold type III), D-amino acid superfamily (fold type IV) and glycogen phophorylase family (fold type V) [, ]. In vertebrates, glycine hydroxymethyltransferase exists in a cytoplasmic and a mitochondrial form whereas only one form is found in prokaryotes.; GO: 0004372 glycine hydroxymethyltransferase activity, 0006544 glycine metabolic process, 0006563 L-serine metabolic process; PDB: 3GBX_B 3H7F_A 1YJS_A 2VMW_A 2W7H_A 2W7E_A 2VMY_B 2W7L_A 2VMZ_A 2VMS_A ....

>PRK07671 cystathionine beta-lyase; Provisional

Probab=99.59  E-value=3.9e-13  Score=136.79  Aligned_cols=143  Identities=16%  Similarity=0.166  Sum_probs=105.1

Q ss_pred             cEEEeCcHHHHHHHHHHHHHHhcCCcccccCCCCCCCeEEEecCCCchHHHHH----HHHhCCCCCcEEEEecCCCCCcC
Q psy14299          4 KPFLLPGGSISNMYSICLARYRLDPDTKRKGLSHLPPLCMFTSEDSHYSMLKA----AHWLGIGMDNVIRVKTNERGQMI   79 (448)
Q Consensus         4 ~g~~t~ggT~an~~al~~a~~~~~~~~~~~G~~~~~~~~Vl~~~~~H~s~~~~----~~~~g~~~~~v~~v~~~~~g~id   79 (448)
                      ..+++++|+.++..++ ....              +++.|++++..|.+....    +...|+   +++.++..     |
T Consensus        67 ~~~~~~sG~aai~~~~-~~l~--------------~Gd~Viv~~~~y~~~~~~~~~~~~~~G~---~v~~v~~~-----d  123 (377)
T PRK07671         67 AGFAFGSGMAAITAVM-MLFS--------------SGDHVILTDDVYGGTYRVMTKVLNRFGI---EHTFVDTS-----N  123 (377)
T ss_pred             ceEEeCCHHHHHHHHH-HHhC--------------CCCEEEECCCccchHHHHHHHHHhcCCe---EEEEECCC-----C
Confidence            3577888876654433 3222              567788898888754433    233455   67777643     8


Q ss_pred             HHHHHHHHHHhhhcCCCcEEEEEeccCCccccccCHHHHHHHHHHcCCEEEEecccccccccccchhhhhcCCCCccEEE
Q psy14299         80 CSFLEQTIQTSLAEKKIPLFVNATAGTTVLGAFDPLDEIATVCEKYDLWMHVDACWGGSLIFSEKYSFVLKGINRANSVS  159 (448)
Q Consensus        80 ~e~Le~~l~~~~~~~~~~~lVv~~~~~t~tG~~~~l~~I~~ia~~~g~~l~VD~A~~~~~~~~~~~~~~~~~~~~aD~~~  159 (448)
                      ++++++++++      ++++|++++++|++|.+.|+++|.++|+++|++++||++++......+     + .. .+|+++
T Consensus       124 ~~~l~~ai~~------~tklV~le~P~NPtg~~~dl~~I~~la~~~g~~lvvD~a~~~~~~~~p-----~-~~-g~Divv  190 (377)
T PRK07671        124 LEEVEEAIRP------NTKAIYVETPTNPLLKITDIKKISTIAKEKGLLTIVDNTFMTPYWQSP-----I-SL-GADIVL  190 (377)
T ss_pred             HHHHHHhcCC------CCeEEEEECCCCCCCcccCHHHHHHHHHHcCCEEEEECCCCccccCCh-----h-hh-CCeEEE
Confidence            9999998864      578999999999999999999999999999999999999876443211     1 11 479999


Q ss_pred             ECCccccCCCCc--eEEEEEeccch
Q psy14299        160 WNPHKMLGAPLQ--CSILLIKEKGL  182 (448)
Q Consensus       160 ~s~hK~l~~P~g--~G~l~vr~~~~  182 (448)
                      .|++|++++|.+  .|+++++++.+
T Consensus       191 ~S~sK~l~G~~~~~~G~~v~~~~~l  215 (377)
T PRK07671        191 HSATKYLGGHSDVVAGLVVVNSPEL  215 (377)
T ss_pred             ecCcccccCCccceeEEEEeCcHHH
Confidence            999999999874  56666655544

>PRK06460 hypothetical protein; Provisional

Probab=99.59  E-value=5.5e-13  Score=135.71  Aligned_cols=142  Identities=15%  Similarity=0.066  Sum_probs=98.4

Q ss_pred             EEEeCcHHHHHHHHHHHHHHhcCCcccccCCCCCCCeEEEecCCCc----hHHHHHHHHhCCCCCcEEEEecCCCCCcCH
Q psy14299          5 PFLLPGGSISNMYSICLARYRLDPDTKRKGLSHLPPLCMFTSEDSH----YSMLKAAHWLGIGMDNVIRVKTNERGQMIC   80 (448)
Q Consensus         5 g~~t~ggT~an~~al~~a~~~~~~~~~~~G~~~~~~~~Vl~~~~~H----~s~~~~~~~~g~~~~~v~~v~~~~~g~id~   80 (448)
                      .+++++|++++..++.+..+              +++.|+++...+    ..+...++..|+   ++..++.+     +.
T Consensus        63 ~v~~~sG~~ai~~~l~al~~--------------~Gd~Vl~~~~~~~~ty~~~~~~~~~~G~---~v~~~~~~-----~~  120 (376)
T PRK06460         63 GVAFSSGMGAISTTALALLK--------------PGNSVLVHRDMFGRSYRFFTDYLKNWGV---NVDASNPG-----SD  120 (376)
T ss_pred             EEEeCCHHHHHHHHHHHHhC--------------CCCEEEEecCCcCcHHHHHHHHHHhhCc---EEEEECCC-----CH
Confidence            45667888888777765533              566777775433    234466677777   67777654     22


Q ss_pred             HHHHHHHHHhhhcCCCcEEEEEeccCCccccccCHHHHHHHHHHcCCEEEEecccccccccccchhhhhcCCCCccEEEE
Q psy14299         81 SFLEQTIQTSLAEKKIPLFVNATAGTTVLGAFDPLDEIATVCEKYDLWMHVDACWGGSLIFSEKYSFVLKGINRANSVSW  160 (448)
Q Consensus        81 e~Le~~l~~~~~~~~~~~lVv~~~~~t~tG~~~~l~~I~~ia~~~g~~l~VD~A~~~~~~~~~~~~~~~~~~~~aD~~~~  160 (448)
                      +.+++.++      .++++|++++++|++|.+.|+++|.++|+++|++++||++|+..... ..   ..   ..+|+++.
T Consensus       121 ~~l~~~~~------~~tklV~l~sp~NPtG~v~d~~~I~~la~~~g~~vivDea~~~~~~~-~~---l~---~~~divv~  187 (376)
T PRK06460        121 NIIEKAKS------KRYDVVFVENITNPLLRVVDITELSKVCKENGSILIVDATFSTPINQ-KP---LE---LGADIVVH  187 (376)
T ss_pred             HHHHHhcC------CCceEEEEECCCCCCCcccCHHHHHHHHHHcCCEEEEECCcCccccC-Ch---hh---cCCCEEEe
Confidence            33443322      35889999999999999999999999999999999999998754321 11   01   13799999


Q ss_pred             CCccccCCCCc--eEEEEEeccch
Q psy14299        161 NPHKMLGAPLQ--CSILLIKEKGL  182 (448)
Q Consensus       161 s~hK~l~~P~g--~G~l~vr~~~~  182 (448)
                      |++|+++++.+  .|+++. ++++
T Consensus       188 S~sK~l~G~~~~~~G~~~~-~~~l  210 (376)
T PRK06460        188 SASKFLAGHNDVIAGLAAG-YGKL  210 (376)
T ss_pred             ecceeccCCCCceEEEEec-CHHH
Confidence            99999986653  555443 4443

>PRK06176 cystathionine gamma-synthase/cystathionine beta-lyase; Validated

Probab=99.59  E-value=5.4e-13  Score=135.85  Aligned_cols=142  Identities=15%  Similarity=0.109  Sum_probs=105.0

Q ss_pred             cEEEeCcHHHHHHHHHHHHHHhcCCcccccCCCCCCCeEEEecCCCchHHHH----HHHHhCCCCCcEEEEecCCCCCcC
Q psy14299          4 KPFLLPGGSISNMYSICLARYRLDPDTKRKGLSHLPPLCMFTSEDSHYSMLK----AAHWLGIGMDNVIRVKTNERGQMI   79 (448)
Q Consensus         4 ~g~~t~ggT~an~~al~~a~~~~~~~~~~~G~~~~~~~~Vl~~~~~H~s~~~----~~~~~g~~~~~v~~v~~~~~g~id   79 (448)
                      ..+++++|+.++..++ .+..              +++.|++++..|.+...    .+...|+   ++..++.+     |
T Consensus        67 ~al~~~SG~~Al~~~l-~~l~--------------pGd~Vi~~~~~y~~t~~~~~~~~~~~gi---~v~~vd~~-----d  123 (380)
T PRK06176         67 KGFAFASGLAGIHAVF-SLFQ--------------SGDHVLLGDDVYGGTFRLFDKVLVKNGL---SCTIIDTS-----D  123 (380)
T ss_pred             CEEEECCHHHHHHHHH-HHcC--------------CCCEEEEcCCChhHHHHHHHHHHHhcCe---EEEEcCCC-----C
Confidence            4578888988765433 3332              66778888887765443    3344455   56666543     8


Q ss_pred             HHHHHHHHHHhhhcCCCcEEEEEeccCCccccccCHHHHHHHHHHcCCEEEEecccccccccccchhhhhcCCCCccEEE
Q psy14299         80 CSFLEQTIQTSLAEKKIPLFVNATAGTTVLGAFDPLDEIATVCEKYDLWMHVDACWGGSLIFSEKYSFVLKGINRANSVS  159 (448)
Q Consensus        80 ~e~Le~~l~~~~~~~~~~~lVv~~~~~t~tG~~~~l~~I~~ia~~~g~~l~VD~A~~~~~~~~~~~~~~~~~~~~aD~~~  159 (448)
                      ++++++++++      ++++|++.+++|++|.+.|+++|+++||+||++++||++++......+     + .. ++|+++
T Consensus       124 ~e~l~~ai~~------~t~lV~lesP~Nptg~~~di~~I~~la~~~gi~vivD~t~a~~~~~~p-----~-~~-gaDivv  190 (380)
T PRK06176        124 LSQIKKAIKP------NTKALYLETPSNPLLKITDLAQCASVAKDHGLLTIVDNTFATPYYQNP-----L-LL-GADIVV  190 (380)
T ss_pred             HHHHHHhcCc------CceEEEEECCCCCCceecCHHHHHHHHHHcCCEEEEECCccccccCCc-----c-cc-CCCEEE
Confidence            9999998854      588999999999999999999999999999999999999986543211     1 11 589999


Q ss_pred             ECCccccCCCCc--eEEEEEeccc
Q psy14299        160 WNPHKMLGAPLQ--CSILLIKEKG  181 (448)
Q Consensus       160 ~s~hK~l~~P~g--~G~l~vr~~~  181 (448)
                      +|++|++++|..  .|++..+++.
T Consensus       191 ~S~tK~l~g~~d~~gG~vv~~~~~  214 (380)
T PRK06176        191 HSGTKYLGGHSDVVAGLVTTNNEA  214 (380)
T ss_pred             ecCceeccCCccceeeEEEecHHH
Confidence            999999999874  5555555544

>PRK05939 hypothetical protein; Provisional

Probab=99.58  E-value=4.8e-13  Score=136.91  Aligned_cols=133  Identities=14%  Similarity=0.072  Sum_probs=103.3

Q ss_pred             cEEEeCcHHHHHHHHHHHHHHhcCCcccccCCCCCCCeEEEecCCCch---HHHHHHHHhCCCCCcEEEEecCCCCCcCH
Q psy14299          4 KPFLLPGGSISNMYSICLARYRLDPDTKRKGLSHLPPLCMFTSEDSHY---SMLKAAHWLGIGMDNVIRVKTNERGQMIC   80 (448)
Q Consensus         4 ~g~~t~ggT~an~~al~~a~~~~~~~~~~~G~~~~~~~~Vl~~~~~H~---s~~~~~~~~g~~~~~v~~v~~~~~g~id~   80 (448)
                      ..+.+++|+.|+..++.+..+              +++.|+++...|.   ++...+...|+   +++.++..     |+
T Consensus        64 ~~v~~ssG~~Ai~~~l~all~--------------~Gd~Vv~~~~~y~~t~~~~~~l~~~G~---~v~~v~~~-----d~  121 (397)
T PRK05939         64 GTVCFATGMAAIAAVFLTLLR--------------AGDHLVSSQFLFGNTNSLFGTLRGLGV---EVTMVDAT-----DV  121 (397)
T ss_pred             eEEEeCCHHHHHHHHHHHHcC--------------CCCEEEECCCccccHHHHHHHHHhcCC---EEEEECCC-----CH
Confidence            457788888888777765433              6677888877664   44455666677   68788763     89


Q ss_pred             HHHHHHHHHhhhcCCCcEEEEEeccCCccccccCHHHHHHHHHHcCCEEEEecccccccccccchhhhhcCCCCccEEEE
Q psy14299         81 SFLEQTIQTSLAEKKIPLFVNATAGTTVLGAFDPLDEIATVCEKYDLWMHVDACWGGSLIFSEKYSFVLKGINRANSVSW  160 (448)
Q Consensus        81 e~Le~~l~~~~~~~~~~~lVv~~~~~t~tG~~~~l~~I~~ia~~~g~~l~VD~A~~~~~~~~~~~~~~~~~~~~aD~~~~  160 (448)
                      +++++++++      ++++|++++++|++|.+.|+++|+++||++|++++||++|+.+... +..     .. ++|+++.
T Consensus       122 e~l~~~l~~------~tklV~vesp~NptG~v~dl~~I~~la~~~gi~livD~t~a~~~~~-~~~-----~~-gaDivv~  188 (397)
T PRK05939        122 QNVAAAIRP------NTRMVFVETIANPGTQVADLAGIGALCRERGLLYVVDNTMTSPWLF-RPK-----DV-GASLVIN  188 (397)
T ss_pred             HHHHHhCCC------CCeEEEEECCCCCCCCHHhHHHHHHHHHHcCCEEEEECCccccccc-Ccc-----cc-CCEEEEe
Confidence            999999854      5889999999999999999999999999999999999999766432 111     11 4899999


Q ss_pred             CCccccCCCCc
Q psy14299        161 NPHKMLGAPLQ  171 (448)
Q Consensus       161 s~hK~l~~P~g  171 (448)
                      |+||+++++..
T Consensus       189 S~sK~~~g~g~  199 (397)
T PRK05939        189 SLSKYIAGHGN  199 (397)
T ss_pred             cCeecccCCCC
Confidence            99999998654

>COG0112 GlyA Glycine/serine hydroxymethyltransferase [Amino acid transport and metabolism]

Probab=99.58  E-value=2.5e-13  Score=133.17  Aligned_cols=287  Identities=16%  Similarity=0.151  Sum_probs=185.5

Q ss_pred             eCcHHHHHHHHHHHHHHhcCCcccccCCCCCCCeEEEecCCCch---HHHHHHHHhCCCCCcEEEEecC-CCCCcCHHHH
Q psy14299          8 LPGGSISNMYSICLARYRLDPDTKRKGLSHLPPLCMFTSEDSHY---SMLKAAHWLGIGMDNVIRVKTN-ERGQMICSFL   83 (448)
Q Consensus         8 t~ggT~an~~al~~a~~~~~~~~~~~G~~~~~~~~Vl~~~~~H~---s~~~~~~~~g~~~~~v~~v~~~-~~g~id~e~L   83 (448)
                      -.+|+.||+.+..+..+              |++.|+.-+..|-   +--......|.- -++...+++ +++.||+|++
T Consensus        94 PhSGs~AN~av~~All~--------------pGDtimgm~l~~GGHltHg~~v~~sG~~-~~~v~Y~vd~et~~IDyD~~  158 (413)
T COG0112          94 PHSGSQANQAVYLALLQ--------------PGDTIMGLDLSHGGHLTHGSPVNFSGKL-FNVVSYGVDPETGLIDYDEV  158 (413)
T ss_pred             CCCchHHHHHHHHHHcC--------------CCCeEecccCCCCCcccCCCCCCcccee-EEeEecccccccCccCHHHH
Confidence            36899999988887666              5566665444442   211112222321 146666777 4599999999


Q ss_pred             HHHHHHhhhcCCCcEEEEEeccCCccccccCHHHHHHHHHHcCCEEEEecccccccccccchhhhhcCCCCccEEEECCc
Q psy14299         84 EQTIQTSLAEKKIPLFVNATAGTTVLGAFDPLDEIATVCEKYDLWMHVDACWGGSLIFSEKYSFVLKGINRANSVSWNPH  163 (448)
Q Consensus        84 e~~l~~~~~~~~~~~lVv~~~~~t~tG~~~~l~~I~~ia~~~g~~l~VD~A~~~~~~~~~~~~~~~~~~~~aD~~~~s~h  163 (448)
                      ++...+     .+|++|++-.  +..--..|++++.++|++.|++|.+|.||-+|......++.   .+..+|+++.+.|
T Consensus       159 ~k~a~e-----~kPK~ii~G~--SaY~r~id~~~~reIad~VGA~L~~DmAHiaGLVA~G~~p~---P~~~AdvVTtTTH  228 (413)
T COG0112         159 EKLAKE-----VKPKLIIAGG--SAYSRPIDFKRFREIADEVGAYLMVDMAHVAGLIAGGVHPN---PLPHADVVTTTTH  228 (413)
T ss_pred             HHHHHH-----hCCCEEEECc--cccccccCHHHHHHHHHHhCceEEehHHHHHHHHhcccCCC---CCCccceEeCCcc
Confidence            999987     3788887643  44567789999999999999999999999988775544432   3446999999999


Q ss_pred             cccCCCCceEEEEEeccchhhhhccCCcccccccCcccccccCCCCCcccCCCCchhHHHHHHHHHhChHHHHHHHHHhh
Q psy14299        164 KMLGAPLQCSILLIKEKGLLHQANATAATYLFQQDKFYDVSFDTGDKSVQCGRKVDAFKLWLMWKARGNLGFRHFVDNAV  243 (448)
Q Consensus       164 K~l~~P~g~G~l~vr~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~g~~~~i~~~~  243 (448)
                      |+|.+|.| |++++++.++.....+..-+-                  .+++.....                       
T Consensus       229 KTlrGPrG-G~Il~~~eel~kkin~aVFPg------------------~qggpl~Hv-----------------------  266 (413)
T COG0112         229 KTLRGPRG-GIILTNDEELAKKINSAVFPG------------------LQGGPLMHV-----------------------  266 (413)
T ss_pred             cCCCCCCc-eEEEeccHHHHHHhhhhcCCc------------------cCCChHHHH-----------------------
Confidence            99999985 455565544444332211110                  111111000                       


Q ss_pred             hhccCCCccchhhhhhhhhhhhhhhhhhhhhhhccccccccccCCCCCccccccchhhHHHHHHHHHhcCccHHHHHHHH
Q psy14299        244 DCSRGSMTFSTLLCFDLQGLLHQANATAATYLFQQDKFYDVSFDTGDKSVQCGRKVDAFKLWLMWKARGNLGFRHFVDNA  323 (448)
Q Consensus       244 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~  323 (448)
                                                                               +.+.++++......+|++..++.
T Consensus       267 ---------------------------------------------------------iAakaVa~~Eal~p~fk~Ya~qV  289 (413)
T COG0112         267 ---------------------------------------------------------IAAKAVAFKEALEPEFKEYAKQV  289 (413)
T ss_pred             ---------------------------------------------------------HHHHHHHHHHHcChhHHHHHHHH
Confidence                                                                     22334566666777899999999


Q ss_pred             HHHHHHHHHHhhcCCCeEEeccCCceeeEEEEeeccCCCccccchhhhhhhhhhhHHHHHHHHhCCcEEEEee----ecC
Q psy14299        324 VDCSRYFLSQISQRPGFRLVIPEFQCTNICFWFIPVSLRDKVEDETWWSTLSKVAPRIKEKLVLGGTLMIGYQ----PLQ  399 (448)
Q Consensus       324 ~~l~~~~~~~L~~~pg~~l~~~~~~~~~v~f~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~L~~~g~~~~~~~----~~~  399 (448)
                      .++++.+.+.|.+. |+++++.--+...+.+.+.+.+++++               ..-+.|.+.| +.+.-.    ...
T Consensus       290 v~NAkaLAe~l~~~-G~~vvsGgTdnHl~lVDl~~~~~~Gk---------------~ae~~L~~~~-It~NKN~iP~D~~  352 (413)
T COG0112         290 VKNAKALAEALKER-GFKVVSGGTDNHLVLVDLRSKGLTGK---------------KAEAALERAG-ITVNKNAIPFDPE  352 (413)
T ss_pred             HHHHHHHHHHHHHc-CCeEecCCccceEEEEEcccCCCCHH---------------HHHHHHHHcC-EeeccCCCCCCCC
Confidence            99999999999997 99998434456777776665554432               3444455556 544321    111


Q ss_pred             CcccccEEEEEecC--CCCCCHHHHHHHHHHHHHHHHH
Q psy14299        400 HRNLHNFFRLVTTC--HPASSRQDMDYAIDQIELRGAE  435 (448)
Q Consensus       400 g~~~~~~lRis~~~--~~~~t~edid~l~~al~~~~~~  435 (448)
                      ....+..||++.-.  .-...++|++++.+.|.++...
T Consensus       353 ~p~~tSGIRiGtpa~TtrG~~e~e~~~Ia~~I~~vl~~  390 (413)
T COG0112         353 SPFVTSGIRIGTPAVTTRGFGEAEMEEIADLIADVLDG  390 (413)
T ss_pred             CCCCCccceeccHHHhhcCCCHHHHHHHHHHHHHHHhc
Confidence            11223679998720  1223467888888888877654

>PRK07366 succinyldiaminopimelate transaminase; Validated

Probab=99.58  E-value=8.4e-13  Score=134.90  Aligned_cols=150  Identities=9%  Similarity=-0.011  Sum_probs=106.6

Q ss_pred             EEEeCcHHHHHHHHHHHHHHhcCCcccccCCCCCCCeEEEecCCCchHHHHHHHHhCCCCCcEEEEecCCC--CCcCHHH
Q psy14299          5 PFLLPGGSISNMYSICLARYRLDPDTKRKGLSHLPPLCMFTSEDSHYSMLKAAHWLGIGMDNVIRVKTNER--GQMICSF   82 (448)
Q Consensus         5 g~~t~ggT~an~~al~~a~~~~~~~~~~~G~~~~~~~~Vl~~~~~H~s~~~~~~~~g~~~~~v~~v~~~~~--g~id~e~   82 (448)
                      .++|+|+++++.+++.+...              +++.|+++...+..+...++..|.   +++.+|.+++  ..+|+++
T Consensus        95 I~it~Gs~~al~~~~~~l~~--------------~gd~Vlv~~P~y~~~~~~~~~~g~---~~~~v~~~~~~~~~~d~~~  157 (388)
T PRK07366         95 VLPLIGSQEGTAHLPLAVLN--------------PGDFALLLDPGYPSHAGGVYLAGG---QIYPMPLRAENDFLPVFAD  157 (388)
T ss_pred             EEECCCcHHHHHHHHHHhCC--------------CCCEEEEcCCCCcchHHHHHhcCC---EEEEEECCCccCCCCCHHH
Confidence            67789999998777665444              567788899999999999999998   7889998753  4678888


Q ss_pred             HHHHHHHhhhcCCCcEEEEEeccCCccccccC---HHHHHHHHHHcCCEEEEecccccccccccchhhhhcCCCC-cc--
Q psy14299         83 LEQTIQTSLAEKKIPLFVNATAGTTVLGAFDP---LDEIATVCEKYDLWMHVDACWGGSLIFSEKYSFVLKGINR-AN--  156 (448)
Q Consensus        83 Le~~l~~~~~~~~~~~lVv~~~~~t~tG~~~~---l~~I~~ia~~~g~~l~VD~A~~~~~~~~~~~~~~~~~~~~-aD--  156 (448)
                      +++.+.+      ++++++++.++|+||.+.+   +++|.++|++||+++++|.+|.-...........+..+.. -+  
T Consensus       158 l~~~~~~------~~k~i~l~~p~NPTG~~~s~~~~~~l~~~a~~~~~~ii~De~Y~~~~~~~~~~~~~~~~~~~~~~~v  231 (388)
T PRK07366        158 IPTEVLA------QARLMVLSYPHNPTTAIAPLSFFQEAVAFCQQHDLVLVHDFPYVDLVFDGEVEPPSILQADPEKSVS  231 (388)
T ss_pred             HHHhhcc------cceEEEEeCCCCCCCccCCHHHHHHHHHHHHHcCeEEEEecchhhcccCCCCCCCChhhCCCCcccE
Confidence            8777643      4788999999999998866   5667789999999999999987554311100011111111 12  


Q ss_pred             EEEECCccccCCC-CceEEEEE
Q psy14299        157 SVSWNPHKMLGAP-LQCSILLI  177 (448)
Q Consensus       157 ~~~~s~hK~l~~P-~g~G~l~v  177 (448)
                      +++.|+.|.++.| .-+|+++.
T Consensus       232 i~~~SfSK~~g~~GlRiG~~v~  253 (388)
T PRK07366        232 IEFFTLSKSYNMGGFRIGFAIG  253 (388)
T ss_pred             EEEeecccccCCcchhheehcC
Confidence            4557889988655 34555543

>PRK06855 aminotransferase; Validated

Probab=99.58  E-value=1.3e-12  Score=135.55  Aligned_cols=152  Identities=14%  Similarity=0.068  Sum_probs=103.4

Q ss_pred             cEEEeCcHHHHHHHHHHHHHHhcCCcccccCCCCCCCeEEEecCCCchHHHHHHH-HhCCCCCcEEEEecCC--CCCcCH
Q psy14299          4 KPFLLPGGSISNMYSICLARYRLDPDTKRKGLSHLPPLCMFTSEDSHYSMLKAAH-WLGIGMDNVIRVKTNE--RGQMIC   80 (448)
Q Consensus         4 ~g~~t~ggT~an~~al~~a~~~~~~~~~~~G~~~~~~~~Vl~~~~~H~s~~~~~~-~~g~~~~~v~~v~~~~--~g~id~   80 (448)
                      ..++|+|+++++..++. ...              +++.|++.+.+++.+..... ..|.   +++.+|.++  ++.+|+
T Consensus        98 ~I~it~G~~~al~~~~~-l~~--------------~Gd~Vlv~~P~Y~~~~~~~~~~~g~---~~v~v~~~~~~~~~~d~  159 (433)
T PRK06855         98 DIIFFNGLGDAIAKIYG-LLR--------------REARVIGPSPAYSTHSSAEAAHAGY---PPVTYRLDPENNWYPDL  159 (433)
T ss_pred             HEEEcCcHHHHHHHHHH-hcC--------------CCCeEEEeCCCCchHHHHHHHhcCC---eEEEEecccccCCCCCH
Confidence            36789999999777653 322              56778888888877554322 3465   677788764  357899


Q ss_pred             HHHHHHHHHhhhcCCCcEEEEEeccCCccccccC---HHHHHHHHHHcCCEEEEecccccccccccchhhhhcCCCC-cc
Q psy14299         81 SFLEQTIQTSLAEKKIPLFVNATAGTTVLGAFDP---LDEIATVCEKYDLWMHVDACWGGSLIFSEKYSFVLKGINR-AN  156 (448)
Q Consensus        81 e~Le~~l~~~~~~~~~~~lVv~~~~~t~tG~~~~---l~~I~~ia~~~g~~l~VD~A~~~~~~~~~~~~~~~~~~~~-aD  156 (448)
                      ++|+++++.    +.++++++++.++|+||.+.+   +++|.++|++||++++.|.+|+-..+..........-... --
T Consensus       160 ~~l~~~~~~----~~~~~~i~l~~P~NPTG~~~s~~~~~~l~~~a~~~~~~II~De~Y~~l~~~~~~~~sl~~~~~~~~~  235 (433)
T PRK06855        160 DDLENKVKY----NPSIAGILLINPDNPTGAVYPKEILREIVDIAREYDLFIICDEIYNNIVYNGKKTVPLSEVIGDVPG  235 (433)
T ss_pred             HHHHHHHhc----CCCceEEEEECCCCCCCcCCCHHHHHHHHHHHHHcCCEEEEeccccccccCCCCCCCHHHHcCcCCe
Confidence            999999863    124678888899999998877   5677888999999999999988554321111110000011 12


Q ss_pred             EEEECCccccCCC-CceEEEEE
Q psy14299        157 SVSWNPHKMLGAP-LQCSILLI  177 (448)
Q Consensus       157 ~~~~s~hK~l~~P-~g~G~l~v  177 (448)
                      +++.|+.|.++.| .-+|++++
T Consensus       236 I~~~S~SK~~~~pGlRiG~ii~  257 (433)
T PRK06855        236 IALKGISKELPWPGSRCGWIEV  257 (433)
T ss_pred             EEEecCccccCCCcceEEEEEE
Confidence            6678899998755 34777665

>PRK03321 putative aminotransferase; Provisional

Probab=99.57  E-value=4.5e-13  Score=135.03  Aligned_cols=155  Identities=10%  Similarity=-0.015  Sum_probs=108.8

Q ss_pred             cEEEeCcHHHHHHHHHHHHHHhcCCcccccCCCCCCCeEEEecCCCchHHHHHHHHhCCCCCcEEEEecCCCCCcCHHHH
Q psy14299          4 KPFLLPGGSISNMYSICLARYRLDPDTKRKGLSHLPPLCMFTSEDSHYSMLKAAHWLGIGMDNVIRVKTNERGQMICSFL   83 (448)
Q Consensus         4 ~g~~t~ggT~an~~al~~a~~~~~~~~~~~G~~~~~~~~Vl~~~~~H~s~~~~~~~~g~~~~~v~~v~~~~~g~id~e~L   83 (448)
                      ..++|+|+++++..++.....              +++.|+++...+..+...++..|.   +++.++.++++.+|++++
T Consensus        76 ~I~~~~G~~~~l~~~~~~~~~--------------~gd~Vli~~p~y~~~~~~~~~~g~---~~~~v~~~~~~~~~~~~l  138 (352)
T PRK03321         76 HVAVGCGSVALCQQLVQATAG--------------PGDEVIFAWRSFEAYPILVQVAGA---TPVQVPLTPDHTHDLDAM  138 (352)
T ss_pred             HEEECCCHHHHHHHHHHHhcC--------------CCCEEEeCCCCHHHHHHHHHHcCC---EEEEccCCCCCCCCHHHH
Confidence            467888888876666544322              567788887776667777788888   788999877788999999


Q ss_pred             HHHHHHhhhcCCCcEEEEEeccCCccccccCHHHHHHHHHH--cCCEEEEecccccccccccchh--hhhcCCCCcc-EE
Q psy14299         84 EQTIQTSLAEKKIPLFVNATAGTTVLGAFDPLDEIATVCEK--YDLWMHVDACWGGSLIFSEKYS--FVLKGINRAN-SV  158 (448)
Q Consensus        84 e~~l~~~~~~~~~~~lVv~~~~~t~tG~~~~l~~I~~ia~~--~g~~l~VD~A~~~~~~~~~~~~--~~~~~~~~aD-~~  158 (448)
                      ++.+++      ++++|++++++|++|.+.|.++|.++|++  +++++++|++|...........  .....  .-+ ++
T Consensus       139 ~~~~~~------~~~~v~l~~p~NPtG~~~~~~~l~~l~~~~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~--~~~vi~  210 (352)
T PRK03321        139 AAAITD------RTRLIFVCNPNNPTGTVVTPAELARFLDAVPADVLVVLDEAYVEYVRDDDVPDGLELVRD--HPNVVV  210 (352)
T ss_pred             HHhhcc------CCCEEEEeCCCCCcCCCcCHHHHHHHHHhCCCCeEEEEechHHHhccCcCCCcHHHHHhh--CCCEEE
Confidence            998854      47789999999999999999999999987  5999999999875433111000  00111  112 44


Q ss_pred             EECCccccCCCC-ceEEEEEeccchhh
Q psy14299        159 SWNPHKMLGAPL-QCSILLIKEKGLLH  184 (448)
Q Consensus       159 ~~s~hK~l~~P~-g~G~l~vr~~~~~~  184 (448)
                      +.|+.|.++.|. -+|+++.. +++..
T Consensus       211 ~~S~SK~~g~~GlRiG~~v~~-~~~~~  236 (352)
T PRK03321        211 LRTFSKAYGLAGLRVGYAVGH-PEVIA  236 (352)
T ss_pred             EecchHHhhhHHHhhhhhcCC-HHHHH
Confidence            557899887442 36776653 34433

>COG1982 LdcC Arginine/lysine/ornithine decarboxylases [Amino acid transport and metabolism]

Probab=99.57  E-value=1.1e-13  Score=142.81  Aligned_cols=152  Identities=19%  Similarity=0.216  Sum_probs=120.8

Q ss_pred             EEeCcHHHHHHHHHHHHHHhcCCcccccCCCCCCCeEEEecCCCchHHHHHHHHhCCCCCcEEEEecCCC------CCcC
Q psy14299          6 FLLPGGSISNMYSICLARYRLDPDTKRKGLSHLPPLCMFTSEDSHYSMLKAAHWLGIGMDNVIRVKTNER------GQMI   79 (448)
Q Consensus         6 ~~t~ggT~an~~al~~a~~~~~~~~~~~G~~~~~~~~Vl~~~~~H~s~~~~~~~~g~~~~~v~~v~~~~~------g~id   79 (448)
                      +.++|.|.||...+++...              +++.|+++++.|.|+..+.-+.|.   ..+++....+      +.|+
T Consensus        90 FvvNGTS~ank~vi~a~~~--------------~GD~VLvdRN~HKSi~~glilaGa---~Pvyl~p~~np~~gi~ggI~  152 (557)
T COG1982          90 FVVNGTSTANKAVINAVLT--------------PGDKVLVDRNCHKSIHHGLILAGA---TPVYLEPSRNPLYGIIGGIP  152 (557)
T ss_pred             EEECCccHHHHHHHHhhcC--------------CCCEEEecCCccHHHHHHHHHcCC---ceEEecCCCCccccccCCCC
Confidence            4555556777777666554              788999999999999999999998   4445544322      5899


Q ss_pred             HHHHHHHHHHhhhcCCCcEEEEEeccCCccccccCHHHHHHHHHHcCCEEEEecccccccccccchhhhhcCCCCccEEE
Q psy14299         80 CSFLEQTIQTSLAEKKIPLFVNATAGTTVLGAFDPLDEIATVCEKYDLWMHVDACWGGSLIFSEKYSFVLKGINRANSVS  159 (448)
Q Consensus        80 ~e~Le~~l~~~~~~~~~~~lVv~~~~~t~tG~~~~l~~I~~ia~~~g~~l~VD~A~~~~~~~~~~~~~~~~~~~~aD~~~  159 (448)
                      .+.+++++.+....   -++++++.+++ .|+..++++|.+.++++++|+.+|.+|+...-..+...... ....+|+++
T Consensus       153 ~~~~~~~l~~~~~~---~k~~vitnpTY-dGv~~n~~~i~~~~~~~~a~v~~deah~~~~~~~~~l~~~~-~~~~~~~~t  227 (557)
T COG1982         153 LETFKEALLAHPDA---EKLAVITNPTY-DGVCYNLRKIVELLHHYGAWVLYDEAHPAHFDFSPMLPESA-LNGGADFVT  227 (557)
T ss_pred             HHHHHHHHHhChhh---heeEEEecCcc-ceEeecHHHHHHHHhhcCceEEhhhcCcccccccccCcchh-hhcCceEEE
Confidence            99999999764221   17888888877 99999999999999999999999999999877665544311 113689999


Q ss_pred             ECCccccCCCCceEEEEEec
Q psy14299        160 WNPHKMLGAPLQCSILLIKE  179 (448)
Q Consensus       160 ~s~hK~l~~P~g~G~l~vr~  179 (448)
                      .|.||.+++-..++.+.+++
T Consensus       228 qS~HK~l~alSQaS~iHv~~  247 (557)
T COG1982         228 QSTHKLLAALSQASMIHVKD  247 (557)
T ss_pred             echhhhhhhhhhhHHHhhCC
Confidence            99999999999999999987

>TIGR03539 DapC_actino succinyldiaminopimelate transaminase

Probab=99.56  E-value=9.8e-13  Score=132.94  Aligned_cols=145  Identities=12%  Similarity=-0.003  Sum_probs=95.5

Q ss_pred             cEEEeCcHHHHHHHHHHHHHHhcCCcccccCCCCCCCeEEEecCCCchHHHHHHHHhCCCCCcEEEEecCCCCCcCHHHH
Q psy14299          4 KPFLLPGGSISNMYSICLARYRLDPDTKRKGLSHLPPLCMFTSEDSHYSMLKAAHWLGIGMDNVIRVKTNERGQMICSFL   83 (448)
Q Consensus         4 ~g~~t~ggT~an~~al~~a~~~~~~~~~~~G~~~~~~~~Vl~~~~~H~s~~~~~~~~g~~~~~v~~v~~~~~g~id~e~L   83 (448)
                      ..++|+|+++++..++......             +++.|++++..|..+...++..|.   +++.++       |++.+
T Consensus        82 ~I~it~G~~~~i~~~~~~l~~~-------------~gd~Vl~~~p~y~~~~~~~~~~g~---~~~~v~-------~~~~l  138 (357)
T TIGR03539        82 AVLPVIGTKELVAWLPTLLGLG-------------PGDTVVIPELAYPTYEVGALLAGA---TPVAAD-------DPTEL  138 (357)
T ss_pred             eEEEccChHHHHHHHHHHHcCC-------------CCCEEEECCCCcHHHHHHHHhcCC---EEeccC-------Chhhc
Confidence            4678899999877665443222             677899999999999988888887   555543       33332


Q ss_pred             HHHHHHhhhcCCCcEEEEEeccCCccccccC---HHHHHHHHHHcCCEEEEecccccccccccchhhhhc-----CCCCc
Q psy14299         84 EQTIQTSLAEKKIPLFVNATAGTTVLGAFDP---LDEIATVCEKYDLWMHVDACWGGSLIFSEKYSFVLK-----GINRA  155 (448)
Q Consensus        84 e~~l~~~~~~~~~~~lVv~~~~~t~tG~~~~---l~~I~~ia~~~g~~l~VD~A~~~~~~~~~~~~~~~~-----~~~~a  155 (448)
                      +    +     .++++|+++.++|+||...+   +++|.++|++||+++++|.+|......-+... ...     +...-
T Consensus       139 ~----~-----~~~~~v~~~~p~NPtG~~~~~~~~~~i~~~a~~~~~~ii~De~y~~~~~~~~~~~-~~~~~~~~~~~~~  208 (357)
T TIGR03539       139 D----P-----VGPDLIWLNSPGNPTGRVLSVDELRAIVAWARERGAVVASDECYLELGWEGRPVS-ILDPRVCGGDHTG  208 (357)
T ss_pred             C----c-----cCccEEEEeCCCCCcCccCCHHHHHHHHHHHHHcCeEEEEecchhhhccCCCCcc-ceecccCCCcccc
Confidence            2    1     25789999999999998765   67799999999999999999864322100000 000     00001


Q ss_pred             cEEEECCccccCCCCc-eEEEEEeccch
Q psy14299        156 NSVSWNPHKMLGAPLQ-CSILLIKEKGL  182 (448)
Q Consensus       156 D~~~~s~hK~l~~P~g-~G~l~vr~~~~  182 (448)
                      -+++.|+.|.++.|.- +|.++. ++++
T Consensus       209 vi~~~S~SK~~~~~G~R~G~~i~-~~~~  235 (357)
T TIGR03539       209 LLAVHSLSKRSNLAGYRAGFVAG-DPAL  235 (357)
T ss_pred             EEEEeccccccCCCceeEEEEec-CHHH
Confidence            2666799998866543 455553 4443

This family of actinobacterial succinyldiaminopimelate transaminase enzymes (DapC) are members of the pfam00155 superfamily. Many of these genes appear adjacent to other genes encoding enzymes of the lysine biosynthesis via diaminopimelate pathway (GenProp0125).

>PRK04311 selenocysteine synthase; Provisional

Probab=99.56  E-value=2.9e-12  Score=133.03  Aligned_cols=149  Identities=15%  Similarity=0.152  Sum_probs=106.5

Q ss_pred             cEEEeCcHHHHHHHHHHHHHHhcCCcccccCCCCCCCeEEEecCCCchH------HHHHHHHhCCCCCcEEEEecCCCCC
Q psy14299          4 KPFLLPGGSISNMYSICLARYRLDPDTKRKGLSHLPPLCMFTSEDSHYS------MLKAAHWLGIGMDNVIRVKTNERGQ   77 (448)
Q Consensus         4 ~g~~t~ggT~an~~al~~a~~~~~~~~~~~G~~~~~~~~Vl~~~~~H~s------~~~~~~~~g~~~~~v~~v~~~~~g~   77 (448)
                      .++++++|+.|+.+++.. ..              +++.|++++.+|++      +...++..|+   +++.++.+  ..
T Consensus       144 ~a~vv~sgtaAl~l~l~~-l~--------------~GdeVIvs~~e~~~~ggs~~i~~~~~~~G~---~l~~v~~~--~~  203 (464)
T PRK04311        144 DALVVNNNAAAVLLALNA-LA--------------AGKEVIVSRGELVEIGGAFRIPDVMRQAGA---RLVEVGTT--NR  203 (464)
T ss_pred             eEEEECCHHHHHHHHHHH-hC--------------CCCEEEEcchhhhhcCcchhhHHHHHHCCc---EEEEECCC--CC
Confidence            478899999998877643 22              55678889887773      2344556677   67777653  34


Q ss_pred             cCHHHHHHHHHHhhhcCCCcEEEEEeccCCc--cc--cccCHHHHHHHHHHcCCEEEEeccccccc----ccccchhhhh
Q psy14299         78 MICSFLEQTIQTSLAEKKIPLFVNATAGTTV--LG--AFDPLDEIATVCEKYDLWMHVDACWGGSL----IFSEKYSFVL  149 (448)
Q Consensus        78 id~e~Le~~l~~~~~~~~~~~lVv~~~~~t~--tG--~~~~l~~I~~ia~~~g~~l~VD~A~~~~~----~~~~~~~~~~  149 (448)
                      .++++++++|.+      ++++|+++|.+|+  +|  ...|+++|+++||+||+++++|+++|...    +.....+ .+
T Consensus       204 t~~~dle~aI~~------~TklV~~vh~sN~~i~G~~~~~dl~eI~~lak~~gi~vivD~gsG~l~~~~~~gl~~~p-~~  276 (464)
T PRK04311        204 THLRDYEQAINE------NTALLLKVHTSNYRIEGFTKEVSLAELAALGKEHGLPVVYDLGSGSLVDLSQYGLPDEP-TV  276 (464)
T ss_pred             CCHHHHHHhcCc------cCeEEEEEcCCCccccccCCcCCHHHHHHHHHHcCCeEEEECCCcccccchhccCCCCC-ch
Confidence            689999999965      4889999999886  45  56899999999999999999999654321    1000001 11


Q ss_pred             cC-C-CCccEEEECCccccCCCCceEEEEEecc
Q psy14299        150 KG-I-NRANSVSWNPHKMLGAPLQCSILLIKEK  180 (448)
Q Consensus       150 ~~-~-~~aD~~~~s~hK~l~~P~g~G~l~vr~~  180 (448)
                      .. + .++|++++|+|||+++| ++|+++.+++
T Consensus       277 ~~~l~~GaDiv~fSg~K~LgGp-~~G~i~g~~~  308 (464)
T PRK04311        277 QELLAAGVDLVTFSGDKLLGGP-QAGIIVGKKE  308 (464)
T ss_pred             hhHHhcCCcEEEecCcccccCC-ceEEEEEcHH
Confidence            10 1 25899999999999999 4888887653

>PRK06702 O-acetylhomoserine aminocarboxypropyltransferase; Validated

Probab=99.56  E-value=5.2e-12  Score=129.97  Aligned_cols=134  Identities=11%  Similarity=0.078  Sum_probs=106.6

Q ss_pred             cEEEeCcHHHHHHHHHHHHHHhcCCcccccCCCCCCCeEEEecCCCchHHHHH----HHHhCCCCCcEEEEecCCCCCcC
Q psy14299          4 KPFLLPGGSISNMYSICLARYRLDPDTKRKGLSHLPPLCMFTSEDSHYSMLKA----AHWLGIGMDNVIRVKTNERGQMI   79 (448)
Q Consensus         4 ~g~~t~ggT~an~~al~~a~~~~~~~~~~~G~~~~~~~~Vl~~~~~H~s~~~~----~~~~g~~~~~v~~v~~~~~g~id   79 (448)
                      .++.+++|+.|+.+++.++..              +++.|+++...+.+....    ....|+   ++..+..    .+|
T Consensus        78 ~av~~~SG~aAi~~al~all~--------------~GD~VI~~~~~Y~~T~~~~~~~l~~~Gi---~v~~vd~----~~d  136 (432)
T PRK06702         78 GAVATASGQAAIMLAVLNICS--------------SGDHLLCSSTVYGGTFNLFGVSLRKLGI---DVTFFNP----NLT  136 (432)
T ss_pred             cEEEECCHHHHHHHHHHHhcC--------------CCCEEEECCCchHHHHHHHHHHHHHCCC---EEEEECC----CCC
Confidence            578999999999998876543              677899998888755554    456677   6666643    479


Q ss_pred             HHHHHHHHHHhhhcCCCcEEEEEeccCCccccccCHHHHHHHHHHcCCEEEEecccccccccccchhhhhcCCCCccEEE
Q psy14299         80 CSFLEQTIQTSLAEKKIPLFVNATAGTTVLGAFDPLDEIATVCEKYDLWMHVDACWGGSLIFSEKYSFVLKGINRANSVS  159 (448)
Q Consensus        80 ~e~Le~~l~~~~~~~~~~~lVv~~~~~t~tG~~~~l~~I~~ia~~~g~~l~VD~A~~~~~~~~~~~~~~~~~~~~aD~~~  159 (448)
                      +++++++|++      ++++|++.++.|+++.+.|+++|+++||+||+++++|.+++..... ....      -+||+++
T Consensus       137 ~~~l~~~I~~------~Tk~I~~e~pgnP~~~v~Di~~I~~iA~~~gi~livD~T~~tP~~~-~pl~------~GADIvv  203 (432)
T PRK06702        137 ADEIVALAND------KTKLVYAESLGNPAMNVLNFKEFSDAAKELEVPFIVDNTLATPYLC-QAFE------HGANIIV  203 (432)
T ss_pred             HHHHHHhCCc------CCeEEEEEcCCCccccccCHHHHHHHHHHcCCEEEEECCCCchhhC-Chhh------cCCCEEE
Confidence            9999999965      5889999999999999999999999999999999999998643321 1111      1589999


Q ss_pred             ECCccccCCCCc
Q psy14299        160 WNPHKMLGAPLQ  171 (448)
Q Consensus       160 ~s~hK~l~~P~g  171 (448)
                      .|..|+++++.+
T Consensus       204 ~S~TKy~~Ghsd  215 (432)
T PRK06702        204 HSTTKYIDGHAS  215 (432)
T ss_pred             EccccccCCCcc
Confidence            999999988744

>PRK12462 phosphoserine aminotransferase; Provisional

Probab=99.56  E-value=3.3e-13  Score=135.20  Aligned_cols=215  Identities=15%  Similarity=0.051  Sum_probs=149.0

Q ss_pred             CcEEEEEeccCCccccccCHHHHHHHHHHcCCEEEEecccccccccccchhhhhcCCCCccEEEECCccccCCCCceEEE
Q psy14299         96 IPLFVNATAGTTVLGAFDPLDEIATVCEKYDLWMHVDACWGGSLIFSEKYSFVLKGINRANSVSWNPHKMLGAPLQCSIL  175 (448)
Q Consensus        96 ~~~lVv~~~~~t~tG~~~~l~~I~~ia~~~g~~l~VD~A~~~~~~~~~~~~~~~~~~~~aD~~~~s~hK~l~~P~g~G~l  175 (448)
                      ....|.+++.+|.+|+..|     ++.+.++++++||+..+.+..+++..        ..|.+..+.+|+++ |+|.+++
T Consensus       143 d~~~v~~t~NETstGv~~~-----~~~~~~~~llvvD~sS~~~s~pid~~--------~~dvi~agsQKnlg-P~Gltvv  208 (364)
T PRK12462        143 RAPFRHYVSNETVEGLQFP-----DAAGLPDSPLIADMSSDFMSRPFDVE--------AYGMVYAHAQKNLG-PAGVTVA  208 (364)
T ss_pred             CCcEEEEccCCCCceEecC-----cccccCCCeEEEEcCchhhCCCCChH--------HccEEEeeccccCC-CCceEEE
Confidence            3568999999999999987     44445799999999988887766532        23899999999998 9999999


Q ss_pred             EEeccchhhhhccCCcccccccCcccccccCCCCCcccCCCCchhHHHHHHHHHhChHHHHHHHHHhhhhccCCCccchh
Q psy14299        176 LIKEKGLLHQANATAATYLFQQDKFYDVSFDTGDKSVQCGRKVDAFKLWLMWKARGNLGFRHFVDNAVDCSRGSMTFSTL  255 (448)
Q Consensus       176 ~vr~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~g~~~~i~~~~~~~~~~~~~~~~  255 (448)
                      ++|++. +.......+.|+.                                       ++..+++              
T Consensus       209 ivs~~a-l~~~~~~~p~~ld---------------------------------------y~~~~~~--------------  234 (364)
T PRK12462        209 IIRRAL-LERVPDTLPPMLD---------------------------------------FRTHVEH--------------  234 (364)
T ss_pred             EECHHH-HhhccccCCchhh---------------------------------------HHHHHhc--------------
Confidence            998875 3332221222221                                       0010000              


Q ss_pred             hhhhhhhhhhhhhhhhhhhhhccccccccccCCCCCccccccchhhHHHHHHHHHhcCc--cHHHHHHHHHHHHHHHHHH
Q psy14299        256 LCFDLQGLLHQANATAATYLFQQDKFYDVSFDTGDKSVQCGRKVDAFKLWLMWKARGNL--GFRHFVDNAVDCSRYFLSQ  333 (448)
Q Consensus       256 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--G~~~~~~~~~~l~~~~~~~  333 (448)
                                                        .....=++...+..+..+++++.++  |++.+.++..++++.+++.
T Consensus       235 ----------------------------------~s~~nTPpv~~iy~l~~~l~~i~~e~GGl~~~~~r~~~ka~~ly~~  280 (364)
T PRK12462        235 ----------------------------------RSNYNTPPVFAIYVMALVLRWIRDEIGGVHAMRDINARKAAMLYAT  280 (364)
T ss_pred             ----------------------------------CCCCCCchHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHH
Confidence                                              0000112245566777889998777  9999999999999999999


Q ss_pred             hhcCCCeEEeccCC---ceeeEEEEeeccCCCccccchhhhhhhhhhhHHHHHHHHhCCcEEEEeeecCCcccccEEEEE
Q psy14299        334 ISQRPGFRLVIPEF---QCTNICFWFIPVSLRDKVEDETWWSTLSKVAPRIKEKLVLGGTLMIGYQPLQHRNLHNFFRLV  410 (448)
Q Consensus       334 L~~~pg~~l~~~~~---~~~~v~f~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~L~~~g~~~~~~~~~~g~~~~~~lRis  410 (448)
                      |.+.++|......+   ...+++|++..+.                ...+|.+...++|.+.+.+  ++.   -+.+|+|
T Consensus       281 id~~~~~~~~~~~~~~RS~mnv~f~~~~~~----------------l~~~f~~~a~~~gl~~lkG--hr~---vgg~Ras  339 (364)
T PRK12462        281 LDALNEVIDCHAHRAARSTMNVAFRFRQPR----------------LDTLFKEQSTEAGFCGLSG--HRS---IGGIRAS  339 (364)
T ss_pred             HHhCCCcccCCCChhhcCcceEEEEcCCHH----------------HHHHHHHHHHHCCCccccC--Ccc---cCceEEE
Confidence            99998775431112   2456677643211                2357888889999543322  222   2569999


Q ss_pred             ecCCCCCCHHHHHHHHHHHHHHHHH
Q psy14299        411 TTCHPASSRQDMDYAIDQIELRGAE  435 (448)
Q Consensus       411 ~~~~~~~t~edid~l~~al~~~~~~  435 (448)
                      +  ....+.|+++.|++-+++..++
T Consensus       340 ~--yna~~~e~v~~L~~fm~~f~~~  362 (364)
T PRK12462        340 L--YNAVSEQAVSRLCAFLKDFAIR  362 (364)
T ss_pred             c--CCCCCHHHHHHHHHHHHHHHHh
Confidence            9  5678899999999999988764

>TIGR02618 tyr_phenol_ly tyrosine phenol-lyase

Probab=99.56  E-value=8.1e-13  Score=134.49  Aligned_cols=162  Identities=12%  Similarity=0.099  Sum_probs=108.2

Q ss_pred             cEEEeCcHHHHHHHHHHHHHHhcCCcccccCCCCCCCeEEEecCCCchHHHHH-HHHhCCCCCcEEEEec----------
Q psy14299          4 KPFLLPGGSISNMYSICLARYRLDPDTKRKGLSHLPPLCMFTSEDSHYSMLKA-AHWLGIGMDNVIRVKT----------   72 (448)
Q Consensus         4 ~g~~t~ggT~an~~al~~a~~~~~~~~~~~G~~~~~~~~Vl~~~~~H~s~~~~-~~~~g~~~~~v~~v~~----------   72 (448)
                      .+++|++||+|..++..+..              .|++.|  +...|..-..+ ..+.|.   .+.-++.          
T Consensus        88 ~av~v~sGT~Al~ll~~l~l--------------~pGDeV--psn~~f~Tt~ahIe~~Ga---v~vDi~~dea~~~~~~~  148 (450)
T TIGR02618        88 YVVPTHQGRGAENLLSQIAI--------------KPGDYV--PGNMYFTTTRYHQEKNGA---TFVDIIIDEAHDAQLNI  148 (450)
T ss_pred             eEEEcCCHHHHHHHHHHhCC--------------CCcCEE--CCceeHHHHHHHHHhCCe---EEEeeecccccccccCC
Confidence            47899999999554322211              256655  66888776666 566776   4555543          


Q ss_pred             CCCCCcCHHHHHHHHHHhhhcCCCcEEEEEeccCCcc-ccc---cCHHHHHHHHHHcCCEEEEecccccc-cccccchhh
Q psy14299         73 NERGQMICSFLEQTIQTSLAEKKIPLFVNATAGTTVL-GAF---DPLDEIATVCEKYDLWMHVDACWGGS-LIFSEKYSF  147 (448)
Q Consensus        73 ~~~g~id~e~Le~~l~~~~~~~~~~~lVv~~~~~t~t-G~~---~~l~~I~~ia~~~g~~l~VD~A~~~~-~~~~~~~~~  147 (448)
                      +.+|.+|+++|+++|++..  ..++++|.++...+.. |..   .++++|.++|++||+++|.|+|+..+ ++++.....
T Consensus       149 p~~GniD~~~Le~aI~~~~--~~~~~lV~~e~t~N~~GG~pvs~~~l~~I~elA~~~Gl~vi~DaAR~~gNA~~I~~re~  226 (450)
T TIGR02618       149 PFKGNVDLKKLQKLIDEVG--ADKIPYICLAVTVNLAGGQPVSMANMREVRELCEAHGIKVFYDATRCVENAYFIKEREQ  226 (450)
T ss_pred             CCCCCcCHHHHHHHhcccc--CcccCceEEEEecccCCCeeCCHHHHHHHHHHHHHcCCEEEEEccchhhChhhhhcccc
Confidence            2468999999999997521  1123455555555544 655   67899999999999999999999883 443211000


Q ss_pred             -----hh----c-CCCCccEEEECCccccCCCCceEEEEEeccchhhhhc
Q psy14299        148 -----VL----K-GINRANSVSWNPHKMLGAPLQCSILLIKEKGLLHQAN  187 (448)
Q Consensus       148 -----~~----~-~~~~aD~~~~s~hK~l~~P~g~G~l~vr~~~~~~~~~  187 (448)
                           .+    . -.+.+|++++|+||-.++|.| |++..+++++..+..
T Consensus       227 g~~~~~i~ei~~e~~~~aD~~~~S~~Kd~~~~~G-G~l~~~d~~l~~k~r  275 (450)
T TIGR02618       227 GYEDKSIAEILKEMMSYADGCTMSGKKDCLVNIG-GFLCMNDDEMFQSAK  275 (450)
T ss_pred             cccCCCHHHHHHHHhccCcEEEEeeccCCCCCCc-eEEEeCCHHHHHHHH
Confidence                 01    1 123589999999999999983 555567877666543

This model describes a group of tyrosine phenol-lyase (4.1.99.2) (beta-tyrosinase), a pyridoxal-phosphate enzyme closely related to tryptophanase (4.1.99.1) (see model TIGR02617). Both belong to the beta-eliminating lyase family (pfam01212)

>TIGR03246 arg_catab_astC succinylornithine transaminase family

Probab=99.55  E-value=2.8e-12  Score=131.50  Aligned_cols=158  Identities=16%  Similarity=0.140  Sum_probs=101.5

Q ss_pred             cEEEeCcHHHHHHHHHHHHHHhcCCcccccCCCCCCCeEEEecCCCchHHHHHHHHhCCC---------CCcEEEEecCC
Q psy14299          4 KPFLLPGGSISNMYSICLARYRLDPDTKRKGLSHLPPLCMFTSEDSHYSMLKAAHWLGIG---------MDNVIRVKTNE   74 (448)
Q Consensus         4 ~g~~t~ggT~an~~al~~a~~~~~~~~~~~G~~~~~~~~Vl~~~~~H~s~~~~~~~~g~~---------~~~v~~v~~~~   74 (448)
                      .++|+++||+||..|+..+|....   ++.| + .+..+|..+...|-+...+....+..         ...+..+|.+ 
T Consensus        94 ~~~f~~SGseA~e~Alk~ar~~~~---~~~~-~-~r~~ii~~~~~yHG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-  167 (397)
T TIGR03246        94 KVFFCNSGAEANEAALKLARRYAL---DKHG-A-DKSEIVAFKNSFHGRTLFTVSVGGQPKYSQGFAPLPGGIKHAPYN-  167 (397)
T ss_pred             EEEEeCCcHHHHHHHHHHHHHHHH---hcCC-C-CCCEEEEECCCcCCccHHHHHhcCCcccccCCCCCCCceEEeCCC-
Confidence            579999999999999999876421   0011 1 14456777778888877665554421         0123344443 


Q ss_pred             CCCcCHHHHHHHHHHhhhcCCCcEEEEEeccCCccccc----cCHHHHHHHHHHcCCEEEEecccccccccccchhhhhc
Q psy14299         75 RGQMICSFLEQTIQTSLAEKKIPLFVNATAGTTVLGAF----DPLDEIATVCEKYDLWMHVDACWGGSLIFSEKYSFVLK  150 (448)
Q Consensus        75 ~g~id~e~Le~~l~~~~~~~~~~~lVv~~~~~t~tG~~----~~l~~I~~ia~~~g~~l~VD~A~~~~~~~~~~~~~~~~  150 (448)
                          |++++++.+.+      ++.+|++....++.|.+    .++++|.++|++||+++++|++|.+.-.....+.....
T Consensus       168 ----d~~~l~~~l~~------~~aavi~Epi~~~~G~~~~~~~~l~~l~~lc~~~g~llI~DEv~tG~Gr~G~~~a~~~~  237 (397)
T TIGR03246       168 ----DLAAAKALISD------KTCAVIVEPIQGEGGVVPADPAFLKGLRELCDRHNALLIFDEVQTGVGRTGELYAYMHY  237 (397)
T ss_pred             ----CHHHHHHHhcc------CeEEEEEecccCCCCCcCCCHHHHHHHHHHHHHcCCEEEEechhhcCCccccchhhhhc
Confidence                89999998853      47788888777767744    44999999999999999999998432111110111111


Q ss_pred             CCCCccEEEECCccccCCCCceEEEEEecc
Q psy14299        151 GINRANSVSWNPHKMLGAPLQCSILLIKEK  180 (448)
Q Consensus       151 ~~~~aD~~~~s~hK~l~~P~g~G~l~vr~~  180 (448)
                      ++ ..|+++  ..|.+++-...|.+..+++
T Consensus       238 gv-~pDi~t--~~K~lggG~pigav~~~~~  264 (397)
T TIGR03246       238 GV-TPDILT--SAKALGGGFPIGAMLTTTE  264 (397)
T ss_pred             CC-CCCEEE--eehhhhCCcceeEEEEcHH
Confidence            33 367765  5788854345677666543

Members of the seed alignment for this protein family are the enzyme succinylornithine transaminase (EC 2.6.1.81), which catalyzes the third of five steps in arginine succinyltransferase (AST) pathway, an ammonia-releasing pathway of arginine degradation. All seed alignment sequences are found within arginine succinyltransferase operons, and all proteins that score above 820.0 bits should function as succinylornithine transaminase. However, a number of sequences extremely closely related in sequence, found in different genomic contexts, are likely to act in different biological processes and may act on different substrates. This model is desigated subfamily rather than equivalog, pending further consideration, for this reason.

>TIGR01326 OAH_OAS_sulfhy OAH/OAS sulfhydrylase

Probab=99.55  E-value=1.7e-12  Score=133.94  Aligned_cols=142  Identities=15%  Similarity=0.088  Sum_probs=109.0

Q ss_pred             cEEEeCcHHHHHHHHHHHHHHhcCCcccccCCCCCCCeEEEecCCCchHH----HHHHHHhCCCCCcEEEEecCCCCCcC
Q psy14299          4 KPFLLPGGSISNMYSICLARYRLDPDTKRKGLSHLPPLCMFTSEDSHYSM----LKAAHWLGIGMDNVIRVKTNERGQMI   79 (448)
Q Consensus         4 ~g~~t~ggT~an~~al~~a~~~~~~~~~~~G~~~~~~~~Vl~~~~~H~s~----~~~~~~~g~~~~~v~~v~~~~~g~id   79 (448)
                      ..+++++|++++..++.+...              +++.|+++...|...    ...+...|+   +++.++.+     |
T Consensus        74 ~~v~~~sG~~Ai~~al~~l~~--------------~Gd~Vl~~~~~y~~t~~~~~~~~~~~G~---~v~~v~~~-----d  131 (418)
T TIGR01326        74 AALAVASGQAAITYAILNLAQ--------------AGDNIVSSSYLYGGTYNLFKHTLKRLGI---EVRFVDPD-----D  131 (418)
T ss_pred             eEEEEccHHHHHHHHHHHHhC--------------CCCEEEEECCCcHHHHHHHHHHHHHcCc---EEEEECCC-----C
Confidence            578999999999888876654              456677787776543    344556677   67777753     8


Q ss_pred             HHHHHHHHHHhhhcCCCcEEEEEeccCCccccccCHHHHHHHHHHcCCEEEEecccccccccccchhhhhcCCCCccEEE
Q psy14299         80 CSFLEQTIQTSLAEKKIPLFVNATAGTTVLGAFDPLDEIATVCEKYDLWMHVDACWGGSLIFSEKYSFVLKGINRANSVS  159 (448)
Q Consensus        80 ~e~Le~~l~~~~~~~~~~~lVv~~~~~t~tG~~~~l~~I~~ia~~~g~~l~VD~A~~~~~~~~~~~~~~~~~~~~aD~~~  159 (448)
                      ++++++++++      ++++|++.+++|++|.+.|+++|.++||++|++++||++++.+....+ .     . .++|+++
T Consensus       132 ~~~l~~~l~~------~t~~V~le~p~NPtg~v~dl~~I~~la~~~~i~livD~t~~~~~~~~~-l-----~-~g~Divv  198 (418)
T TIGR01326       132 PEEFEKAIDE------NTKAVFAETIGNPAINVPDIEAIAEVAHAHGVPLIVDNTFATPYLCRP-I-----D-HGADIVV  198 (418)
T ss_pred             HHHHHHhcCc------CCeEEEEECCCCCCCeecCHHHHHHHHHHcCCEEEEECCCchhhcCCc-h-----h-cCCeEEE
Confidence            9999998854      478999999999999999999999999999999999999986633211 1     1 1479999


Q ss_pred             ECCccccCCCCc-eEEEEEecc
Q psy14299        160 WNPHKMLGAPLQ-CSILLIKEK  180 (448)
Q Consensus       160 ~s~hK~l~~P~g-~G~l~vr~~  180 (448)
                      .|++|+++++.. .|.++++.+
T Consensus       199 ~S~sK~l~g~G~~lGg~v~~~~  220 (418)
T TIGR01326       199 HSATKYIGGHGTAIGGVIVDGG  220 (418)
T ss_pred             ECccccccCCccceEEEEEecc
Confidence            999999987643 566666543

This model describes a distinct clade of the Cys/Met metabolism pyridoxal phosphate-dependent enzyme superfamily. Members include examples of OAH/OAS sulfhydrylase, an enzyme with activity both as O-acetylhomoserine (OAH) sulfhydrylase (EC 2.5.1.49) and O-acetylserine (OAS) sulphydrylase (EC 2.5.1.47). An alternate name for OAH sulfhydrylase is homocysteine synthase. This model is designated subfamily because it may or may not have both activities.

>COG0079 HisC Histidinol-phosphate/aromatic aminotransferase and cobyric acid decarboxylase [Amino acid transport and metabolism]

Probab=99.55  E-value=2.6e-12  Score=129.30  Aligned_cols=273  Identities=14%  Similarity=0.081  Sum_probs=179.0

Q ss_pred             cEEEeCcHHHHHHHHHHHHHHhcCCcccccCCCCCCCeEEEecCCCchHHHHHHHHhCCCCCcEEEEecCCCCCcCHHHH
Q psy14299          4 KPFLLPGGSISNMYSICLARYRLDPDTKRKGLSHLPPLCMFTSEDSHYSMLKAAHWLGIGMDNVIRVKTNERGQMICSFL   83 (448)
Q Consensus         4 ~g~~t~ggT~an~~al~~a~~~~~~~~~~~G~~~~~~~~Vl~~~~~H~s~~~~~~~~g~~~~~v~~v~~~~~g~id~e~L   83 (448)
                      .++.++|+++.+...+.+.+.              +++.|+++..+...+...++..|.   +++.++..+ +.+|++.+
T Consensus        77 ~V~~gnGsde~i~~l~~~~~~--------------~gd~vl~~~Ptf~~Y~~~a~~~g~---~~~~v~~~~-~~~d~~~~  138 (356)
T COG0079          77 NVLVGNGSDELIELLVRAFVE--------------PGDTVLIPEPTFSMYEIAAQLAGA---EVVKVPLKE-FRLDLDAI  138 (356)
T ss_pred             eEEEcCChHHHHHHHHHHhhc--------------CCCEEEEcCCChHHHHHHHHhcCC---eEEEecccc-cccCHHHH
Confidence            345578888887777766655              556788898999999999999999   899999987 99999999


Q ss_pred             HHHHHHhhhcCCCcEEEEEeccCCccccccCHHHHHHHHHHc--CCEEEEecccccccccccchhhhhcCCCCcc-EEEE
Q psy14299         84 EQTIQTSLAEKKIPLFVNATAGTTVLGAFDPLDEIATVCEKY--DLWMHVDACWGGSLIFSEKYSFVLKGINRAN-SVSW  160 (448)
Q Consensus        84 e~~l~~~~~~~~~~~lVv~~~~~t~tG~~~~l~~I~~ia~~~--g~~l~VD~A~~~~~~~~~~~~~~~~~~~~aD-~~~~  160 (448)
                      ...+.+      ++++|+++.++|+||...+.++|.+++...  +.+++||+||.=..-  +.....+.  ..-+ ++.=
T Consensus       139 ~~~~~~------~~~lv~i~nPNNPTG~~~~~~~l~~l~~~~~~~~~vVvDEAY~eF~~--~~~~~l~~--~~~nlivlR  208 (356)
T COG0079         139 LAAIRD------KTKLVFLCNPNNPTGTLLPREELRALLEALPEGGLVVIDEAYIEFSP--ESSLELLK--YPPNLIVLR  208 (356)
T ss_pred             HHhhhc------CCCEEEEeCCCCCCCCCCCHHHHHHHHHhCCCCcEEEEeCchhhcCC--chhhhhcc--CCCCEEEEE
Confidence            999875      478999999999999999888888888754  789999999874433  11111111  0112 4445


Q ss_pred             CCccccCCC-CceEEEEEeccchhhhhccCCcccccccCcccccccCCCCCcccCCCCchhHHHHHHHHHhChHHHHHHH
Q psy14299        161 NPHKMLGAP-LQCSILLIKEKGLLHQANATAATYLFQQDKFYDVSFDTGDKSVQCGRKVDAFKLWLMWKARGNLGFRHFV  239 (448)
Q Consensus       161 s~hK~l~~P-~g~G~l~vr~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~g~~~~i  239 (448)
                      ++.|.++-+ .=+|+ .+.++++........++|-.+                       .....++..+          
T Consensus       209 TfSKa~gLAGlRlGy-~ia~~~~i~~l~~vr~p~~v~-----------------------~~a~~aa~aa----------  254 (356)
T COG0079         209 TFSKAFGLAGLRVGY-AIANPELIAALNKVRPPFNVS-----------------------SPALAAAIAA----------  254 (356)
T ss_pred             ecHHhhhcchhceee-ccCCHHHHHHHHHhcCCCCCC-----------------------HHHHHHHHHH----------
Confidence            888876654 23455 344555554443333333110                       0000001110          


Q ss_pred             HHhhhhccCCCccchhhhhhhhhhhhhhhhhhhhhhhccccccccccCCCCCccccccchhhHHHHHHHHHhcCccHHHH
Q psy14299        240 DNAVDCSRGSMTFSTLLCFDLQGLLHQANATAATYLFQQDKFYDVSFDTGDKSVQCGRKVDAFKLWLMWKARGNLGFRHF  319 (448)
Q Consensus       240 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~  319 (448)
                                                                                          ++..  +-+++.
T Consensus       255 --------------------------------------------------------------------l~~~--~~~~~~  264 (356)
T COG0079         255 --------------------------------------------------------------------LRDA--DYLEES  264 (356)
T ss_pred             --------------------------------------------------------------------cccH--HHHHHH
Confidence                                                                                1110  234456


Q ss_pred             HHHHHHHHHHHHHHhhcCCCeE-EeccCCceeeEEEEeeccCCCccccchhhhhhhhhhhHHHHHHHHhCCcEEEEeeec
Q psy14299        320 VDNAVDCSRYFLSQISQRPGFR-LVIPEFQCTNICFWFIPVSLRDKVEDETWWSTLSKVAPRIKEKLVLGGTLMIGYQPL  398 (448)
Q Consensus       320 ~~~~~~l~~~~~~~L~~~pg~~-l~~~~~~~~~v~f~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~L~~~g~~~~~~~~~  398 (448)
                      .+.....++++.+.|++++ +. ++  +...+.+.++...                .. ...+.+.|.++|++ +....-
T Consensus       265 ~~~~~~~r~rl~~~l~~~~-~~~v~--pS~aNFvlv~~~~----------------~~-~~~l~~~L~~~gii-vR~~~~  323 (356)
T COG0079         265 VERIREERERLYAALKALG-LFGVF--PSQANFVLVRVPD----------------AE-AAALAEALLKKGIL-VRDCSS  323 (356)
T ss_pred             HHHHHHHHHHHHHHHHhCC-CCeec--CCCCcEEEEECCC----------------cc-HHHHHHHHHHCCEE-EEeCCC
Confidence            6677778999999999995 55 54  4455555554321                01 23688999999944 443321


Q ss_pred             CCcccccEEEEEecCCCCCCHHHHHHHHHHHHHHHHH
Q psy14299        399 QHRNLHNFFRLVTTCHPASSRQDMDYAIDQIELRGAE  435 (448)
Q Consensus       399 ~g~~~~~~lRis~~~~~~~t~edid~l~~al~~~~~~  435 (448)
                      .+ ..++++|+++.     |+|+.++++++|+++.+.
T Consensus       324 ~~-~~~~~lRitvg-----t~een~~ll~AL~~~~~~  354 (356)
T COG0079         324 VG-LLPGYLRITVG-----TPEENDRLLAALREVLKG  354 (356)
T ss_pred             CC-CCCCeEEEEeC-----CHHHHHHHHHHHHHHHhc
Confidence            22 12469999996     788889999999988754

>PLN02624 ornithine-delta-aminotransferase

Probab=99.55  E-value=1.1e-11  Score=129.88  Aligned_cols=162  Identities=17%  Similarity=0.128  Sum_probs=100.2

Q ss_pred             cEEEeCcHHHHHHHHHHHHHHhcCCcccccCCCCCCCeEEEecCCCchHHHHHHHHhCCC---------CCcEEEEecCC
Q psy14299          4 KPFLLPGGSISNMYSICLARYRLDPDTKRKGLSHLPPLCMFTSEDSHYSMLKAAHWLGIG---------MDNVIRVKTNE   74 (448)
Q Consensus         4 ~g~~t~ggT~an~~al~~a~~~~~~~~~~~G~~~~~~~~Vl~~~~~H~s~~~~~~~~g~~---------~~~v~~v~~~~   74 (448)
                      ..+|+++|++||-.|+..+|....   ...|.+.....+|.....-|-...-+..+.+-.         ...+..+|.+ 
T Consensus       134 ~~~f~~SGseA~e~AlklAr~~~~---~~~g~~~~~~~ii~~~~~yHG~t~~~~s~~~~~~~~~~~~~~~~~~~~~~~~-  209 (474)
T PLN02624        134 MVLPMNTGAEGVETAIKLARKWGY---EKKGIPKNEAIIVSCCGCFHGRTLAAISMSCDNEATRGFGPLLPGHLKVDFG-  209 (474)
T ss_pred             eEEEeCChHHHHHHHHHHHHHHHH---hhcCCCCCCcEEEEECCCcCCCCHHHhhcCCCccccccCCCCCCCceEeCCC-
Confidence            478999999999999998886411   111221111223444444454333333322210         0113344433 


Q ss_pred             CCCcCHHHHHHHHHHhhhcCCCcEEEEEeccCCccccccC----HHHHHHHHHHcCCEEEEecccccccccccchhhhhc
Q psy14299         75 RGQMICSFLEQTIQTSLAEKKIPLFVNATAGTTVLGAFDP----LDEIATVCEKYDLWMHVDACWGGSLIFSEKYSFVLK  150 (448)
Q Consensus        75 ~g~id~e~Le~~l~~~~~~~~~~~lVv~~~~~t~tG~~~~----l~~I~~ia~~~g~~l~VD~A~~~~~~~~~~~~~~~~  150 (448)
                          |++.+++.++.   .+.++.+|++..+.+++|.+.|    +++|.++|++||+++++|++|.+.-.....+.....
T Consensus       210 ----d~~~l~~~l~~---~~~~iaaiiiEpv~~~~G~v~p~~~~L~~l~~lc~~~gillI~DEv~tG~GrtG~~~a~~~~  282 (474)
T PLN02624        210 ----DLDALEKIFEE---DGDRIAAFLFEPIQGEAGVVIPPDGYLKAVRELCSKHNVLMIADEIQTGLARTGKMLACDWE  282 (474)
T ss_pred             ----CHHHHHHHHHh---CCCCEEEEEECCccCCCCCcCCCHHHHHHHHHHHHHcCCEEEEeccccCcCcCcchhhHHhc
Confidence                78999998864   2345778999999999999888    999999999999999999998742111111111112


Q ss_pred             CCCCccEEEECCccccCCC-CceEEEEEec
Q psy14299        151 GINRANSVSWNPHKMLGAP-LQCSILLIKE  179 (448)
Q Consensus       151 ~~~~aD~~~~s~hK~l~~P-~g~G~l~vr~  179 (448)
                      ++ ..|++++  .|.+++. ..+|.++.++
T Consensus       283 ~i-~pDiv~l--sK~lggG~~pigav~~~~  309 (474)
T PLN02624        283 EV-RPDVVIL--GKALGGGVIPVSAVLADK  309 (474)
T ss_pred             CC-CCCEEEe--cccccCCCCcceeeeecH
Confidence            33 3688887  4988766 4577776644

>PRK05967 cystathionine beta-lyase; Provisional

Probab=99.55  E-value=1.8e-12  Score=132.07  Aligned_cols=131  Identities=14%  Similarity=0.138  Sum_probs=102.1

Q ss_pred             cEEEeCcHHHHHHHHHHHHHHhcCCcccccCCCCCCCeEEEecCCCchHHHHH----HHHhCCCCCcEEEEecCCCCCcC
Q psy14299          4 KPFLLPGGSISNMYSICLARYRLDPDTKRKGLSHLPPLCMFTSEDSHYSMLKA----AHWLGIGMDNVIRVKTNERGQMI   79 (448)
Q Consensus         4 ~g~~t~ggT~an~~al~~a~~~~~~~~~~~G~~~~~~~~Vl~~~~~H~s~~~~----~~~~g~~~~~v~~v~~~~~g~id   79 (448)
                      ..+++++|+.|+..++.+..+              +++.|++++..+.++...    ++..|+   ++..++.+     +
T Consensus        81 ~~v~~sSG~aAi~~~l~all~--------------~GD~Vlv~~~~Y~~~~~l~~~~l~~~Gi---~v~~vd~~-----~  138 (395)
T PRK05967         81 GTILVPSGLAAVTVPFLGFLS--------------PGDHALIVDSVYYPTRHFCDTMLKRLGV---EVEYYDPE-----I  138 (395)
T ss_pred             CEEEECcHHHHHHHHHHHhcC--------------CCCEEEEccCCcHHHHHHHHHHHHhcCe---EEEEeCCC-----C
Confidence            468888899888877765533              678899998888887643    455566   67777543     4


Q ss_pred             HHHHHHHHHHhhhcCCCcEEEEEeccCCccccccCHHHHHHHHHHcCCEEEEecccccccccccchhhhhcCCCCccEEE
Q psy14299         80 CSFLEQTIQTSLAEKKIPLFVNATAGTTVLGAFDPLDEIATVCEKYDLWMHVDACWGGSLIFSEKYSFVLKGINRANSVS  159 (448)
Q Consensus        80 ~e~Le~~l~~~~~~~~~~~lVv~~~~~t~tG~~~~l~~I~~ia~~~g~~l~VD~A~~~~~~~~~~~~~~~~~~~~aD~~~  159 (448)
                      .+.+++++++      ++++|.+++++|+++.+.||++|+++||++|++++||.+++.....-+ ..     + ++|+++
T Consensus       139 ~e~l~~al~~------~TklV~lesPsNP~l~v~dl~~I~~la~~~g~~vvVD~t~a~p~~~~p-l~-----~-GaDivv  205 (395)
T PRK05967        139 GAGIAKLMRP------NTKVVHTEAPGSNTFEMQDIPAIAEAAHRHGAIVMMDNTWATPLYFRP-LD-----F-GVDISI  205 (395)
T ss_pred             HHHHHHhcCc------CceEEEEECCCCCCCcHHHHHHHHHHHHHhCCEEEEECCccCceecCh-hH-----c-CCCEEE
Confidence            5778888854      589999999999999999999999999999999999999986543211 11     1 589999


Q ss_pred             ECCccccCCC
Q psy14299        160 WNPHKMLGAP  169 (448)
Q Consensus       160 ~s~hK~l~~P  169 (448)
                      .|..|++++.
T Consensus       206 ~S~tKy~~Gh  215 (395)
T PRK05967        206 HAATKYPSGH  215 (395)
T ss_pred             EecccccCCC
Confidence            9999997654

>PRK02610 histidinol-phosphate aminotransferase; Provisional

Probab=99.54  E-value=6.6e-12  Score=127.72  Aligned_cols=158  Identities=11%  Similarity=-0.043  Sum_probs=108.8

Q ss_pred             EEEeCcHHHHHHHHHHHHHHhcCCcccccCCCCCCCeEEEecCCCchHHHHHHHHhCCCCCcEEEEecCC-CCCcCHHHH
Q psy14299          5 PFLLPGGSISNMYSICLARYRLDPDTKRKGLSHLPPLCMFTSEDSHYSMLKAAHWLGIGMDNVIRVKTNE-RGQMICSFL   83 (448)
Q Consensus         5 g~~t~ggT~an~~al~~a~~~~~~~~~~~G~~~~~~~~Vl~~~~~H~s~~~~~~~~g~~~~~v~~v~~~~-~g~id~e~L   83 (448)
                      .++|+|+++++..++.+....             ++..|+++...+..+...++..|.   +++.++.++ ++.+|+++|
T Consensus        94 I~it~Ga~~al~~~~~~~~~~-------------g~~~Vlv~~P~y~~~~~~~~~~g~---~~~~~~~~~~~~~~d~~~l  157 (374)
T PRK02610         94 ISVGNGSDELIRSLLIATCLG-------------GEGSILVAEPTFSMYGILAQTLGI---PVVRVGRDPETFEIDLAAA  157 (374)
T ss_pred             EEEcCChHHHHHHHHHHHcCC-------------CCCeEEEcCCChHHHHHHHHHcCC---EEEEecCCcccCCCCHHHH
Confidence            678999999987665544332             223688898999999999999998   788888765 478999999


Q ss_pred             HHHHHHhhhcCCCcEEEEEeccCCccccccCHHHHHHHHH-HcCCEEEEecccccccccccchhhhhcCCCCccEEEECC
Q psy14299         84 EQTIQTSLAEKKIPLFVNATAGTTVLGAFDPLDEIATVCE-KYDLWMHVDACWGGSLIFSEKYSFVLKGINRANSVSWNP  162 (448)
Q Consensus        84 e~~l~~~~~~~~~~~lVv~~~~~t~tG~~~~l~~I~~ia~-~~g~~l~VD~A~~~~~~~~~~~~~~~~~~~~aD~~~~s~  162 (448)
                      ++++++..  ..++++|+++.++|+||...+.+++.++++ .+++++++|.+|.-.... ... ..+.... --+++.|+
T Consensus       158 ~~~~~~~~--~~~~k~i~l~~P~NPTG~~~s~~~l~~l~~~~~~~~iI~De~Y~~~~~~-~~~-~~~~~~~-~~ivi~Sf  232 (374)
T PRK02610        158 QSAIEQTQ--NPPVRVVFVVHPNSPTGNPLTAAELEWLRSLPEDILVVIDEAYFEFSQT-TLV-GELAQHP-NWVILRTF  232 (374)
T ss_pred             HHHHHhhc--CCCceEEEEeCCCCCCCCCCCHHHHHHHHhccCCcEEEEeccccccCcc-chH-HHHhcCC-CEEEEEec
Confidence            99986411  135889999999999999988777666653 248999999998743211 100 1111110 01556789


Q ss_pred             ccccCCC-CceEEEEEeccchhh
Q psy14299        163 HKMLGAP-LQCSILLIKEKGLLH  184 (448)
Q Consensus       163 hK~l~~P-~g~G~l~vr~~~~~~  184 (448)
                      .|.++.| .-+|+++. ++.+..
T Consensus       233 SK~~g~~GlRiG~~v~-~~~l~~  254 (374)
T PRK02610        233 SKAFRLAAHRVGYAIG-HPELIA  254 (374)
T ss_pred             chhccCcccceeeeec-CHHHHH
Confidence            9999655 44676655 444433

>PRK07865 N-succinyldiaminopimelate aminotransferase; Reviewed

Probab=99.54  E-value=1.6e-12  Score=131.63  Aligned_cols=147  Identities=13%  Similarity=0.038  Sum_probs=96.7

Q ss_pred             cEEEeCcHHHHHHHHHHHHHHhcCCcccccCCCCCCCeEEEecCCCchHHHHHHHHhCCCCCcEEEEecCCCCCcCHHHH
Q psy14299          4 KPFLLPGGSISNMYSICLARYRLDPDTKRKGLSHLPPLCMFTSEDSHYSMLKAAHWLGIGMDNVIRVKTNERGQMICSFL   83 (448)
Q Consensus         4 ~g~~t~ggT~an~~al~~a~~~~~~~~~~~G~~~~~~~~Vl~~~~~H~s~~~~~~~~g~~~~~v~~v~~~~~g~id~e~L   83 (448)
                      ..++|+|+++++..++.+....             +++.|+++...|..+...++..|.   ++..++       +++++
T Consensus        88 ~I~it~G~~~~i~~~~~~l~~~-------------~gd~Vl~~~p~y~~~~~~~~~~g~---~~~~~~-------~~~~l  144 (364)
T PRK07865         88 AVLPVIGSKELVAWLPTLLGLG-------------PGDVVVIPELAYPTYEVGARLAGA---TVVRAD-------SLTEL  144 (364)
T ss_pred             cEEEccChHHHHHHHHHHHcCC-------------CCCEEEECCCCcccHHHHHHhcCC---EEEecC-------ChhhC
Confidence            4678888889876654443121             567899999999999999998888   566553       22333


Q ss_pred             HHHHHHhhhcCCCcEEEEEeccCCccccccC---HHHHHHHHHHcCCEEEEecccccccccccchh---hhhcC-CCCcc
Q psy14299         84 EQTIQTSLAEKKIPLFVNATAGTTVLGAFDP---LDEIATVCEKYDLWMHVDACWGGSLIFSEKYS---FVLKG-INRAN  156 (448)
Q Consensus        84 e~~l~~~~~~~~~~~lVv~~~~~t~tG~~~~---l~~I~~ia~~~g~~l~VD~A~~~~~~~~~~~~---~~~~~-~~~aD  156 (448)
                      ++         .++++|+++.++|+||.+.+   +++|.++|++||+++++|.+|+......+...   ....+ ...--
T Consensus       145 ~~---------~~~~~v~~~~p~NPtG~~~~~~~~~~i~~~a~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~~~~~  215 (364)
T PRK07865        145 GP---------QRPALIWLNSPSNPTGRVLGVDHLRKVVAWARERGAVVASDECYLELGWDAEPVSILDPRVCGGDHTGL  215 (364)
T ss_pred             Cc---------ccceEEEEcCCCCCCCccCCHHHHHHHHHHHHHcCCEEEEecchhhhccCCCCCccccccccCCccceE
Confidence            21         25789999999999997755   67888999999999999999885432111000   00000 00113


Q ss_pred             EEEECCccccCCCC-ceEEEEEeccchh
Q psy14299        157 SVSWNPHKMLGAPL-QCSILLIKEKGLL  183 (448)
Q Consensus       157 ~~~~s~hK~l~~P~-g~G~l~vr~~~~~  183 (448)
                      +++.|+.|.++.|. -+|+++. ++++.
T Consensus       216 i~~~S~SK~~~~~GlRiG~i~~-~~~~~  242 (364)
T PRK07865        216 LAVHSLSKQSNLAGYRAGFVAG-DPALV  242 (364)
T ss_pred             EEEeechhccCCCceeeEEEec-CHHHH
Confidence            77789999986553 3455443 44433

>PRK09147 succinyldiaminopimelate transaminase; Provisional

Probab=99.54  E-value=3.5e-12  Score=130.74  Aligned_cols=154  Identities=10%  Similarity=0.021  Sum_probs=109.3

Q ss_pred             cEEEeCcHHHHHHHHHHHHHHhcCCcccccCCCCCCCeEEEecCCCchHHHHHHHHhCCCCCcEEEEecCCC--CCcCHH
Q psy14299          4 KPFLLPGGSISNMYSICLARYRLDPDTKRKGLSHLPPLCMFTSEDSHYSMLKAAHWLGIGMDNVIRVKTNER--GQMICS   81 (448)
Q Consensus         4 ~g~~t~ggT~an~~al~~a~~~~~~~~~~~G~~~~~~~~Vl~~~~~H~s~~~~~~~~g~~~~~v~~v~~~~~--g~id~e   81 (448)
                      ..++|+|+++++..++.+..++        |   .+++.|+++...+..+...++..|.   +++.+|.+++  +.+|++
T Consensus        92 ~i~it~G~~~al~~~~~~l~~~--------~---~~gd~vlv~~P~y~~~~~~~~~~g~---~~~~vp~~~~~~~~~d~~  157 (396)
T PRK09147         92 QVLPVNGSREALFAFAQTVIDR--------D---GPGPLVVCPNPFYQIYEGAALLAGA---EPYFLNCDPANNFAPDFD  157 (396)
T ss_pred             eEEECCChHHHHHHHHHHHcCC--------C---CCCCEEEEcCCCccchHHHHHhcCC---EEEEeccCccccCccCHH
Confidence            4678899999987777665441        0   1267788898888888888998898   7889998643  579999


Q ss_pred             HHHHHHHHhhhcCCCcEEEEEeccCCcccccc---CHHHHHHHHHHcCCEEEEecccccccccccchh-hhh---cCCC-
Q psy14299         82 FLEQTIQTSLAEKKIPLFVNATAGTTVLGAFD---PLDEIATVCEKYDLWMHVDACWGGSLIFSEKYS-FVL---KGIN-  153 (448)
Q Consensus        82 ~Le~~l~~~~~~~~~~~lVv~~~~~t~tG~~~---~l~~I~~ia~~~g~~l~VD~A~~~~~~~~~~~~-~~~---~~~~-  153 (448)
                      ++++.+.+      ++++++++.++|+||.+.   .+++|.++|++|++++++|.+|+-..+...... ...   .... 
T Consensus       158 ~l~~~~~~------~~k~i~l~nP~NPTG~~~s~~~~~~l~~~a~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~~~  231 (396)
T PRK09147        158 AVPAEVWA------RTQLLFVCSPGNPTGAVLPLDDWKKLFALSDRYGFVIASDECYSEIYFDEAAPPLGLLEAAAELGR  231 (396)
T ss_pred             HHHHHHhh------ccEEEEEcCCCCCcCccCCHHHHHHHHHHHHHcCeEEEeeccccccccCCCCCCchhhhhccccCc
Confidence            99988754      478999999999999886   477788899999999999999886543111000 000   0000 


Q ss_pred             -Ccc--EEEECCccccCCC-CceEEEEE
Q psy14299        154 -RAN--SVSWNPHKMLGAP-LQCSILLI  177 (448)
Q Consensus       154 -~aD--~~~~s~hK~l~~P-~g~G~l~v  177 (448)
                       ..|  +++.|+.|.++.| .-+|+++.
T Consensus       232 ~~~~~vi~~~S~SK~~~~~GlRiG~~~~  259 (396)
T PRK09147        232 DDFKRLVVFHSLSKRSNVPGLRSGFVAG  259 (396)
T ss_pred             cccccEEEEeccccccCCccceeeeecC
Confidence             011  6667899976555 45666554

>TIGR00707 argD acetylornithine and succinylornithine aminotransferases

Probab=99.54  E-value=3e-12  Score=130.17  Aligned_cols=160  Identities=18%  Similarity=0.085  Sum_probs=92.9

Q ss_pred             cEEEeCcHHHHHHHHHHHHHHhcCCcccccCCCCCC-CeEEEecCCCchHHHHHHHHhCCCCCcEEEEecCCCCCc----
Q psy14299          4 KPFLLPGGSISNMYSICLARYRLDPDTKRKGLSHLP-PLCMFTSEDSHYSMLKAAHWLGIGMDNVIRVKTNERGQM----   78 (448)
Q Consensus         4 ~g~~t~ggT~an~~al~~a~~~~~~~~~~~G~~~~~-~~~Vl~~~~~H~s~~~~~~~~g~~~~~v~~v~~~~~g~i----   78 (448)
                      ..++++||++++..++.+++....    ..|   .+ +.+++.+...|.+...+....+.........+...+...    
T Consensus        86 ~~~~~~sg~~a~~~a~~~~~~~~~----~~~---~~~~~vi~~~~~yh~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  158 (379)
T TIGR00707        86 RVFFCNSGAEANEAALKLARKYTG----DKG---KEKKKIIAFENSFHGRTMGALSATGQPKYQKGFEPLVPGFSYAPYN  158 (379)
T ss_pred             EEEEeCCcHHHHHHHHHHHHHHhh----ccC---CCCCeEEEECCCcCCccHHHHHhcCChhhhccCCCCCCCceeeCCC
Confidence            478999999999999887754210    001   02 334444445554444433322211000001111112111    


Q ss_pred             CHHHHHHHHHHhhhcCCCcEEEEEeccCCcccccc----CHHHHHHHHHHcCCEEEEecccccccccccchhhhhcCCCC
Q psy14299         79 ICSFLEQTIQTSLAEKKIPLFVNATAGTTVLGAFD----PLDEIATVCEKYDLWMHVDACWGGSLIFSEKYSFVLKGINR  154 (448)
Q Consensus        79 d~e~Le~~l~~~~~~~~~~~lVv~~~~~t~tG~~~----~l~~I~~ia~~~g~~l~VD~A~~~~~~~~~~~~~~~~~~~~  154 (448)
                      |++++++.+.+      ++++|+++.+.+++|...    ++++|.++|++||+++++|++|...............++ .
T Consensus       159 d~~~l~~~~~~------~~~~v~~~p~~~~~g~~~~~~~~l~~i~~l~~~~~~~~i~De~~~~~~~~g~~~~~~~~~~-~  231 (379)
T TIGR00707       159 DIESLKKAIDD------ETAAVIVEPIQGEGGVNPASAEFLKALREICKDKDALLIFDEVQTGIGRTGKFFAYEHYGI-E  231 (379)
T ss_pred             CHHHHHHHhhh------CeeEEEEEccccCCCCccCCHHHHHHHHHHHHHcCCEEEEeccccCCCccchhhhHHhcCC-C
Confidence            89999998864      477888888877777543    489999999999999999999873211111011111122 2


Q ss_pred             ccEEEECCccccCCCCceEEEEEec
Q psy14299        155 ANSVSWNPHKMLGAPLQCSILLIKE  179 (448)
Q Consensus       155 aD~~~~s~hK~l~~P~g~G~l~vr~  179 (448)
                      .|.++  ++|.+++...+|+++.++
T Consensus       232 ~d~~t--~sK~~~~G~riG~~~~~~  254 (379)
T TIGR00707       232 PDIIT--LAKGLGGGVPIGATLAKE  254 (379)
T ss_pred             CCEEE--EcccccCCcccEEEEEcH
Confidence            46554  589998656688877644

Members of this family may also act on ornithine, like ornithine aminotransferase (EC 2.6.1.13) (see MEDLINE:90337349) and on succinyldiaminopimelate, like N-succinyldiaminopmelate-aminotransferase (EC 2.6.1.17, DapC, an enzyme of lysine biosynthesis) (see MEDLINE:99175097)

>PRK01278 argD acetylornithine transaminase protein; Provisional

Probab=99.53  E-value=4.6e-12  Score=129.52  Aligned_cols=163  Identities=15%  Similarity=-0.002  Sum_probs=97.2

Q ss_pred             cEEEeCcHHHHHHHHHHHHHHhcCCcccccCCCCCCCeEEEecCCCchHHHHHHHHhCCCCCcEEEEecCCCC----CcC
Q psy14299          4 KPFLLPGGSISNMYSICLARYRLDPDTKRKGLSHLPPLCMFTSEDSHYSMLKAAHWLGIGMDNVIRVKTNERG----QMI   79 (448)
Q Consensus         4 ~g~~t~ggT~an~~al~~a~~~~~~~~~~~G~~~~~~~~Vl~~~~~H~s~~~~~~~~g~~~~~v~~v~~~~~g----~id   79 (448)
                      .++|++|||+||..|+.+++....    ..|.+ ....+|..+...|-+...+....+.....-...|..++.    ..|
T Consensus        90 ~v~~~~sGseA~~~al~~ar~~~~----~~G~~-~r~~vi~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d  164 (389)
T PRK01278         90 KVFFTNSGAEAVECAIKTARRYHY----GKGHP-ERYRIITFEGAFHGRTLATIAAGGQEKYLEGFGPLVPGFDQVPFGD  164 (389)
T ss_pred             EEEEcCCcHHHHHHHHHHHHHHHH----hcCCC-CCCEEEEECCCcCCCcHHHHhccCChhhcccCCCCCCCceEeCCCC
Confidence            479999999999999998876411    11211 123455556666665555444333210000000111111    148


Q ss_pred             HHHHHHHHHHhhhcCCCcEEEEEeccCCccccc----cCHHHHHHHHHHcCCEEEEecccccccccccchhhhhcCCCCc
Q psy14299         80 CSFLEQTIQTSLAEKKIPLFVNATAGTTVLGAF----DPLDEIATVCEKYDLWMHVDACWGGSLIFSEKYSFVLKGINRA  155 (448)
Q Consensus        80 ~e~Le~~l~~~~~~~~~~~lVv~~~~~t~tG~~----~~l~~I~~ia~~~g~~l~VD~A~~~~~~~~~~~~~~~~~~~~a  155 (448)
                      ++++++.+++      ++++|+++...+++|..    .++++|.++|++||+++++|++|.+.............++ ..
T Consensus       165 ~~~l~~~l~~------~~~avivep~~~~~G~~~~~~~~l~~l~~l~~~~g~~lI~DEv~~g~g~~g~~~~~~~~~~-~p  237 (389)
T PRK01278        165 IEALKAAITP------NTAAILIEPIQGEGGIRPAPDEFLKGLRQLCDENGLLLIFDEVQCGMGRTGKLFAHEWAGV-TP  237 (389)
T ss_pred             HHHHHHhhCC------CeEEEEEecccCCCCCcCCCHHHHHHHHHHHHHcCCEEEEeccccCCCcCCcceeecccCC-CC
Confidence            9999998853      57888888877777743    4799999999999999999999884321111001001122 24


Q ss_pred             cEEEECCccccCCCCceEEEEEecc
Q psy14299        156 NSVSWNPHKMLGAPLQCSILLIKEK  180 (448)
Q Consensus       156 D~~~~s~hK~l~~P~g~G~l~vr~~  180 (448)
                      |.+  +..|.+++-...|.++.+++
T Consensus       238 di~--t~sK~l~~G~~ig~~~~~~~  260 (389)
T PRK01278        238 DIM--AVAKGIGGGFPLGACLATEE  260 (389)
T ss_pred             CEE--EEehhccCCcceEEEEEcHH
Confidence            655  45798874344777776553

>PF05889 SLA_LP_auto_ag: Soluble liver antigen/liver pancreas antigen (SLA/LP autoantigen); InterPro: IPR008829 This family consists of several eukaryotic and archaeal proteins which are related to the Homo sapiens soluble liver antigen/liver pancreas antigen (SLA/LP autoantigen)

Probab=99.53  E-value=1.3e-12  Score=129.45  Aligned_cols=199  Identities=14%  Similarity=0.157  Sum_probs=133.8

Q ss_pred             cEEEeCcHH-HHHHHHHHHHHHhcCCcccccCCCCCCCeEEEecCCCchHHHHHHHHhCCCCCcEEEEecC--CC-CCcC
Q psy14299          4 KPFLLPGGS-ISNMYSICLARYRLDPDTKRKGLSHLPPLCMFTSEDSHYSMLKAAHWLGIGMDNVIRVKTN--ER-GQMI   79 (448)
Q Consensus         4 ~g~~t~ggT-~an~~al~~a~~~~~~~~~~~G~~~~~~~~Vl~~~~~H~s~~~~~~~~g~~~~~v~~v~~~--~~-g~id   79 (448)
                      ..+.+|-+| |+..+++.+.+.+            .....|+.++.+|+|-.+++...|+   +++.||..  ++ -..|
T Consensus        76 ~~~~vP~atgm~l~l~l~~l~~r------------~~a~~Viw~ridqkSc~kai~~AGl---~~~vV~~~~~~d~l~td  140 (389)
T PF05889_consen   76 SCFVVPMATGMSLTLCLLALRMR------------PKAKYVIWPRIDQKSCFKAIERAGL---EPVVVENVLEGDELITD  140 (389)
T ss_dssp             EEEEESS-HHHHHHHHHHHHHHH------------CT--EEEEEEEETHHHHHHHHHTT----EEEEE-EEEETTEEEEH
T ss_pred             ceEEEecccccHHHHHHHHHhcc------------cCCceEEEeeccccchHHHHHhcCC---eEEEeeccCCCCeeecc
Confidence            368889999 8888888888743            1345688899999999999999999   67777642  23 3668


Q ss_pred             HHHHHHHHHHhhhcCCCcEEEEEeccCCccccccC-HHHHHHHHHHcCCEEEEecccccccccc-cchhhhhcCCCCccE
Q psy14299         80 CSFLEQTIQTSLAEKKIPLFVNATAGTTVLGAFDP-LDEIATVCEKYDLWMHVDACWGGSLIFS-EKYSFVLKGINRANS  157 (448)
Q Consensus        80 ~e~Le~~l~~~~~~~~~~~lVv~~~~~t~tG~~~~-l~~I~~ia~~~g~~l~VD~A~~~~~~~~-~~~~~~~~~~~~aD~  157 (448)
                      .+.+++.+++.   +..+.++++++.+...+-..| +++|+++|++||++++|.+|||.-.-.. ..... ....+.+|.
T Consensus       141 ~~~ie~~i~~~---G~~~iLcvltttscfapr~~D~i~~IakiC~~~~IPhlvNnAYgvQ~~~~~~~i~~-a~~~GRvda  216 (389)
T PF05889_consen  141 LEAIEAKIEEL---GADNILCVLTTTSCFAPRLPDDIEEIAKICKEYDIPHLVNNAYGVQSSKCMHLIQQ-AWRVGRVDA  216 (389)
T ss_dssp             HHHHHHHHHHH---CGGGEEEEEEESSTTTTB----HHHHHHHHHHHT--EEEEGTTTTT-HHHHHHHHH-HHHHSTCSE
T ss_pred             HHHHHHHHHHh---CCCCeEEEEEecCccCCCCCccHHHHHHHHHHcCCceEEccchhhhHHHHHHHHHH-HHhcCCcce
Confidence            89999999653   456789999999998997766 9999999999999999999999732211 00000 011235799


Q ss_pred             EEECCccccCCCCceEEEEEeccchhhhhccCCcccccccCcccccccCCCCCcccCCCCchhHHHHHHHHHhChHHHHH
Q psy14299        158 VSWNPHKMLGAPLQCSILLIKEKGLLHQANATAATYLFQQDKFYDVSFDTGDKSVQCGRKVDAFKLWLMWKARGNLGFRH  237 (448)
Q Consensus       158 ~~~s~hK~l~~P~g~G~l~vr~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~g~~~  237 (448)
                      ++-+.-|.|..|.|-+.++..++..+.......|+-.                     .+...+-+...+..+|..|+..
T Consensus       217 ~vqS~dkNF~VPvGgai~As~~~~~i~~vs~~YpGRa---------------------s~sp~ld~~itLl~LG~~g~~~  275 (389)
T PF05889_consen  217 FVQSTDKNFMVPVGGAIMASFDPSGILAVSKEYPGRA---------------------SASPSLDLFITLLSLGCTGYGA  275 (389)
T ss_dssp             EEEEHHHHHCEESSHEEEEESSHHHHHHHHHTSHSHB---------------------TSHHHHHHHHHHHHHHHHHHHH
T ss_pred             eeeecCCCEEecCCCcEEEecCHHHHHHHHHHhhhhh---------------------hcccchHHHHHHHHHhhhHHHH
Confidence            9999999999999999988877654443321111111                     0112334555777788888888


Q ss_pred             HHHHh
Q psy14299        238 FVDNA  242 (448)
Q Consensus       238 ~i~~~  242 (448)
                      .+...
T Consensus       276 ll~~r  280 (389)
T PF05889_consen  276 LLKER  280 (389)
T ss_dssp             HHHHH
T ss_pred             HHHHH
Confidence            66553

Autoantibodies are a hallmark of autoimmune hepatitis, but most are not disease specific. Autoantibodies to soluble liver antigen (SLA) and to liver and pancreas antigen (LP) have been described as disease specific, occurring in about 30% of all patients with autoimmune hepatitis []. The function of SLA/LP is unknown, however, it has been suggested that the protein may function as a serine hydroxymethyltransferase and may be an important enzyme in the thus far poorly understood selenocysteine pathway []. The archaeal sequences Q8TXK0 from SWISSPROT and Q8TYR3 from SWISSPROT are annotated as being pyridoxal phosphate-dependent enzymes.; GO: 0016740 transferase activity; PDB: 2E7J_B 2E7I_B 2Z67_C 3HL2_D 3BC8_A 3BCA_A 3BCB_A.

>PRK09275 aspartate aminotransferase; Provisional

Probab=99.53  E-value=3.8e-12  Score=133.63  Aligned_cols=338  Identities=12%  Similarity=0.017  Sum_probs=191.2

Q ss_pred             cEEEeCcHHHHHHHHHHHHHHh-cCCcccccCCCCCCCeEEEecCCCchHHHHHHHHhCCCCCcEEEEecCC--CCCcCH
Q psy14299          4 KPFLLPGGSISNMYSICLARYR-LDPDTKRKGLSHLPPLCMFTSEDSHYSMLKAAHWLGIGMDNVIRVKTNE--RGQMIC   80 (448)
Q Consensus         4 ~g~~t~ggT~an~~al~~a~~~-~~~~~~~~G~~~~~~~~Vl~~~~~H~s~~~~~~~~g~~~~~v~~v~~~~--~g~id~   80 (448)
                      ..++|+|+++++..++.+.... +.          .|++.|+++...+..+...+++.|.+. .++.++.++  ++.+|+
T Consensus       163 ~I~vT~Ga~~al~~~~~aL~~~~ll----------~pGD~Vlv~~P~y~~Y~~~~~l~g~~~-~~v~v~~~~~~~f~~d~  231 (527)
T PRK09275        163 DLFAVEGGTAAMCYIFDSLKENGLL----------KAGDKIALMTPIFTPYLEIPELPRYDL-EVVHINADEENEWQYPD  231 (527)
T ss_pred             eEEEeCCHHHHHHHHHHHHhhhhcC----------CCCCEEEEeCCChHHHHHHHHHcCCCe-EEEEeecCcccCCCCCH
Confidence            5889999999988887653221 11          377889999999999999999887643 355565442  478999


Q ss_pred             HHHHHHHHHhhhcCCCcEEEEEeccCCccccccC---HHHHHHHHHH--cCCEEEEecccccccccccchhhhhcCCCCc
Q psy14299         81 SFLEQTIQTSLAEKKIPLFVNATAGTTVLGAFDP---LDEIATVCEK--YDLWMHVDACWGGSLIFSEKYSFVLKGINRA  155 (448)
Q Consensus        81 e~Le~~l~~~~~~~~~~~lVv~~~~~t~tG~~~~---l~~I~~ia~~--~g~~l~VD~A~~~~~~~~~~~~~~~~~~~~a  155 (448)
                      ++|++++.+      ++++|+++.++|+||.+.+   +++|+++|++  ++++++.|.+|+-...   ...........-
T Consensus       232 ~~l~~~~~~------~tkai~l~nP~NPTG~v~s~e~l~~I~~ia~~~~~~l~II~DEvY~~f~~---~~~s~~~~~~~~  302 (527)
T PRK09275        232 SELEKLRDP------SIKALFLVNPSNPPSVAMSDESLEKIADIVNEKRPDLMIITDDVYGTFVD---DFRSLFAVLPYN  302 (527)
T ss_pred             HHHHhhcCC------CCCEEEEeCCcCCcCCCCCHHHHHHHHHHHHhcCCCcEEEECCCChhhcc---cccCHHHhCCCC
Confidence            999987643      6889999999999998877   7778888965  5999999999885432   111111111111


Q ss_pred             cEEEECCccccCCCC-ceEEEEEeccchhhhhccCCc--------ccccccCcccccccCCCCCcccCCCCchhHHHHHH
Q psy14299        156 NSVSWNPHKMLGAPL-QCSILLIKEKGLLHQANATAA--------TYLFQQDKFYDVSFDTGDKSVQCGRKVDAFKLWLM  226 (448)
Q Consensus       156 D~~~~s~hK~l~~P~-g~G~l~vr~~~~~~~~~~~~~--------~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  226 (448)
                      -+++.|+.|.++.|. -+|+++..++..........+        .++.+-.      .+.                   
T Consensus       303 ~I~v~SfSK~f~mtG~RlG~i~~~~~~v~~~~i~~l~~~~~~~~~~ry~~~~------~~p-------------------  357 (527)
T PRK09275        303 TILVYSFSKYFGATGWRLGVIALHEDNVFDKLIAKLPEEKKKELDKRYSSLT------TDP-------------------  357 (527)
T ss_pred             EEEEeehhhhccCcHhHHhhhhcCchhHHHHHHHhccHHHHHHHHhhhhhcc------CCc-------------------
Confidence            255668889886553 256665544322211111000        0000000      000                   


Q ss_pred             HHHhChHHHHHHHHHhhhhccCCCccchhhhhhhhhhhhhhhhhhhhhhhccccccccccCCCCCccccccchhhHHHH-
Q psy14299        227 WKARGNLGFRHFVDNAVDCSRGSMTFSTLLCFDLQGLLHQANATAATYLFQQDKFYDVSFDTGDKSVQCGRKVDAFKLW-  305 (448)
Q Consensus       227 ~~~~g~~g~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-  305 (448)
                             .--..|++.+.-+|.                                       ...+...|.+.+.+.+.. 
T Consensus       358 -------~~~~fidrlvad~~~---------------------------------------v~~~~t~~~s~p~Q~a~al  391 (527)
T PRK09275        358 -------EKLKFIDRLVADSRQ---------------------------------------VALNHTAGLSTPQQVQMAL  391 (527)
T ss_pred             -------chhhhHHHHHHHHHH---------------------------------------HHHhhccCCCCHHHHHHHH
Confidence                   000122222211111                                       111222355555555422 


Q ss_pred             ----HHHHHhcCccHHHHHHHHHHHHHHHHHHhhcCCCeEEeccCCceeeEEEEeeccCCCccccchhhhhhh--hhhhH
Q psy14299        306 ----LMWKARGNLGFRHFVDNAVDCSRYFLSQISQRPGFRLVIPEFQCTNICFWFIPVSLRDKVEDETWWSTL--SKVAP  379 (448)
Q Consensus       306 ----~~~~~~~~~G~~~~~~~~~~l~~~~~~~L~~~pg~~l~~~~~~~~~v~f~~~~~~~~~~~~~~~~~~~~--~~~~~  379 (448)
                          ..++. .....+++.+...+.++.+.+.|. . ++..  .+|..+.++|.-.+. +.......++.+.+  +....
T Consensus       392 ~~~~all~~-~~~~~~~~~~~~~~Rr~~l~~~Lg-~-~~~~--~~p~g~fY~~~di~~-~~~~~~g~~f~~~l~~~~~~~  465 (527)
T PRK09275        392 FSLFALLDE-EDAYKKAMKDIIRRRYKALYEGLG-L-PEPE--DPNNAAYYTLIDLEE-WAEKNYGKEFADYLKKNYSPV  465 (527)
T ss_pred             HHHHHHHhC-chHHHHHHHHHHHHHHHHHHHHcC-C-CCcC--CCCCeeEEEEEEhHH-hhhhccCchhhhhhhccCCHH
Confidence                22332 334466677777777777777772 2 2221  246666666632211 00000000000000  00124


Q ss_pred             HHHHHHHhCCcEEEEeeecCCcccccEEEEEecCCCCCCHHHHHHHHHHHHHHHHHhHHhhhh
Q psy14299        380 RIKEKLVLGGTLMIGYQPLQHRNLHNFFRLVTTCHPASSRQDMDYAIDQIELRGAEVDLEMQA  442 (448)
Q Consensus       380 ~i~~~L~~~g~~~~~~~~~~g~~~~~~lRis~~~~~~~t~edid~l~~al~~~~~~~~~~~~~  442 (448)
                      ++..+|.++..+.+.|+...|. .++++|+|+.   ..+++++....+.|+++..+...+.+.
T Consensus       466 ~f~~~Ll~e~gV~v~PG~~Fg~-~~~~vRis~a---~~~~~~~~~~~~rl~~~l~~y~~~~~~  524 (527)
T PRK09275        466 DLLFRLAEETGVVLLPGGGFGG-PEWSVRVSLA---NLNEEDYAKIGKAIRKLLDEYYEEYKK  524 (527)
T ss_pred             HHHHHHHhcCCEEEeCchhhCC-CCCeEEEEEe---cCCHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            6777887664466666655443 2478999995   467899999999999998887766554

>PRK05964 adenosylmethionine--8-amino-7-oxononanoate transaminase; Provisional

Probab=99.52  E-value=4.3e-12  Score=131.25  Aligned_cols=166  Identities=13%  Similarity=0.051  Sum_probs=95.0

Q ss_pred             cEEEeCcHHHHHHHHHHHHHHhcCCcccccCCCCCCCeEEEecCCCchHHHHHHHHhCCCC---------CcEEEEecCC
Q psy14299          4 KPFLLPGGSISNMYSICLARYRLDPDTKRKGLSHLPPLCMFTSEDSHYSMLKAAHWLGIGM---------DNVIRVKTNE   74 (448)
Q Consensus         4 ~g~~t~ggT~an~~al~~a~~~~~~~~~~~G~~~~~~~~Vl~~~~~H~s~~~~~~~~g~~~---------~~v~~v~~~~   74 (448)
                      .++|+++||+|+-.|+..+|.....    .|.+ ....+|......|-...-+....+-..         ..+..++.+.
T Consensus       104 ~v~f~~sGseA~e~A~klar~~~~~----~~~~-~r~~ii~~~~~yHG~t~~~ls~~~~~~~~~~~~~~~~~~~~~~~~~  178 (423)
T PRK05964        104 HVFFSDSGSVAVEVALKMALQYWRN----RGEP-GRSRFLSLRGGYHGDTIGTMSVGDRGGMHALYTPLLFEQVTAPFPP  178 (423)
T ss_pred             EEEEeCCcHHHHHHHHHHHHHHHHh----cCCC-CCcEEEEEcCCcCCccHHHHhcCCCccccccccCcCCCCEEeCCCc
Confidence            4799999999999999999875210    1111 123345555555544333333222110         0123344321


Q ss_pred             C--CCcCHHHHHHHHHHhhhcCCCcEEEEEec-cCCccccccC----HHHHHHHHHHcCCEEEEecccccccccccchhh
Q psy14299         75 R--GQMICSFLEQTIQTSLAEKKIPLFVNATA-GTTVLGAFDP----LDEIATVCEKYDLWMHVDACWGGSLIFSEKYSF  147 (448)
Q Consensus        75 ~--g~id~e~Le~~l~~~~~~~~~~~lVv~~~-~~t~tG~~~~----l~~I~~ia~~~g~~l~VD~A~~~~~~~~~~~~~  147 (448)
                      +  ...+++++++.+++.   +..+.+|++.- .....|...|    +++|.++|++||+++++|++|.+.-.....+..
T Consensus       179 ~d~~~~~~~~l~~~l~~~---~~~iaavi~Ep~i~~~gG~~~~~~~~l~~l~~lc~~~g~llI~DEv~tg~gr~G~~~a~  255 (423)
T PRK05964        179 DGYEQATLDALEALLEKH---AGEIAAFIVEPLVQGAGGMLFYDPRYLAELRRICDRHGVLLIFDEIATGFGRTGTLFAC  255 (423)
T ss_pred             chhHHHHHHHHHHHHHhC---CCcEEEEEEecccccCCCcccCCHHHHHHHHHHHHHcCCEEEEechhhCCCcCcchhHH
Confidence            1  122378888888642   23455566654 3555665544    999999999999999999998642111111111


Q ss_pred             hhcCCCCccEEEECCccccCCC-CceEEEEEecc
Q psy14299        148 VLKGINRANSVSWNPHKMLGAP-LQCSILLIKEK  180 (448)
Q Consensus       148 ~~~~~~~aD~~~~s~hK~l~~P-~g~G~l~vr~~  180 (448)
                      ...++ ..|++++  .|++++. ..+|.++.+++
T Consensus       256 ~~~~v-~pDi~~~--~K~l~gG~~p~~av~~~~~  286 (423)
T PRK05964        256 EQAGV-SPDIMCL--SKGLTGGYLPLAATLCTAE  286 (423)
T ss_pred             HhcCC-CCCeeee--ehhhhcCcccceEEEEcHH
Confidence            11233 3687766  4999776 46787766543

>TIGR03538 DapC_gpp succinyldiaminopimelate transaminase

Probab=99.52  E-value=4.9e-12  Score=129.49  Aligned_cols=153  Identities=10%  Similarity=-0.009  Sum_probs=107.8

Q ss_pred             cEEEeCcHHHHHHHHHHHHHHhcCCcccccCCCCCCCeEEEecCCCchHHHHHHHHhCCCCCcEEEEecCCC--CCcCHH
Q psy14299          4 KPFLLPGGSISNMYSICLARYRLDPDTKRKGLSHLPPLCMFTSEDSHYSMLKAAHWLGIGMDNVIRVKTNER--GQMICS   81 (448)
Q Consensus         4 ~g~~t~ggT~an~~al~~a~~~~~~~~~~~G~~~~~~~~Vl~~~~~H~s~~~~~~~~g~~~~~v~~v~~~~~--g~id~e   81 (448)
                      ..++|+|+++++.+++.+...+            ++...|+++...+..+...++..|.   +++.+|.+++  +.+|++
T Consensus        92 ~i~it~Ga~~al~~~~~~l~~~------------gd~~~vlv~~P~y~~~~~~~~~~g~---~~~~v~~~~~~~~~~d~~  156 (393)
T TIGR03538        92 HVLPVNGTREALFAFAQAVINP------------GQAPLVVMPNPFYQIYEGAALLAGA---EPYFLNCTAENGFLPDFD  156 (393)
T ss_pred             eEEECCCcHHHHHHHHHHHcCC------------CCcceEEecCCCCcchHHHHHhcCC---eEEEeeccccCCCCCCHH
Confidence            3678999999988777665542            1222488888888888888888888   7889998643  478999


Q ss_pred             HHHHHHHHhhhcCCCcEEEEEeccCCccccccC---HHHHHHHHHHcCCEEEEeccccccccccc-chhh---hhcCCC-
Q psy14299         82 FLEQTIQTSLAEKKIPLFVNATAGTTVLGAFDP---LDEIATVCEKYDLWMHVDACWGGSLIFSE-KYSF---VLKGIN-  153 (448)
Q Consensus        82 ~Le~~l~~~~~~~~~~~lVv~~~~~t~tG~~~~---l~~I~~ia~~~g~~l~VD~A~~~~~~~~~-~~~~---~~~~~~-  153 (448)
                      ++++++.+      ++++++++.++|+||.+.+   +++|.++|++||+++++|.+|.-...... ....   .+.... 
T Consensus       157 ~l~~~~~~------~~k~i~l~~p~NPtG~~~s~~~~~~l~~~a~~~~~~ii~De~Y~~~~~~~~~~~~~~~~~~~~~~~  230 (393)
T TIGR03538       157 AVPESVWR------RCQLLFVCSPGNPTGAVLSLDTLKKLIELADQYGFIIASDECYSELYFDEGNPPAGLLQAAAQLGR  230 (393)
T ss_pred             HHHHHHhh------cceEEEEeCCCCCcCcccCHHHHHHHHHHHHHCCEEEEECcchhhcccCCCCCCcCHHHhcccccc
Confidence            99998854      4789889999999998877   78899999999999999999875433110 0000   000010 


Q ss_pred             ---CccEEEECCccccCCC-CceEEEEE
Q psy14299        154 ---RANSVSWNPHKMLGAP-LQCSILLI  177 (448)
Q Consensus       154 ---~aD~~~~s~hK~l~~P-~g~G~l~v  177 (448)
                         .--+++.|+.|.++.| .-+|+++.
T Consensus       231 ~~~~~vi~i~S~SK~~~~~GlRvG~~i~  258 (393)
T TIGR03538       231 DDFRRCLVFHSLSKRSNLPGLRSGFVAG  258 (393)
T ss_pred             cccccEEEEecchhhcCCcccceEEEec
Confidence               0116677899965444 44666554

This family of succinyldiaminopimelate transaminases (DapC) includes the experimentally characterized enzyme from Bordatella pertussis. The majority of genes in this family are proximal to genes encoding components of the lysine biosynthesis via diaminopimelate pathway (GenProp0125).

>KOG0259|consensus

Probab=99.52  E-value=1.3e-11  Score=120.03  Aligned_cols=297  Identities=12%  Similarity=0.061  Sum_probs=189.1

Q ss_pred             cEEEeCcHHHHHHHHHHHHHHhcCCcccccCCCCCCCeEEEecCCCchHHHHHHHHhCCCCCcEEEEec--CCCCCcCHH
Q psy14299          4 KPFLLPGGSISNMYSICLARYRLDPDTKRKGLSHLPPLCMFTSEDSHYSMLKAAHWLGIGMDNVIRVKT--NERGQMICS   81 (448)
Q Consensus         4 ~g~~t~ggT~an~~al~~a~~~~~~~~~~~G~~~~~~~~Vl~~~~~H~s~~~~~~~~g~~~~~v~~v~~--~~~g~id~e   81 (448)
                      ++++|+|.+.|+-+++.+..+              |+.-|++++...+-+..-+...|+   .++....  +.++++|++
T Consensus       128 DV~ltsGC~qAIe~~i~~LA~--------------p~aNILlPrPGfp~Y~~~a~~~~l---EVR~ydlLPe~~weIDL~  190 (447)
T KOG0259|consen  128 DVVLTSGCSQAIELAISSLAN--------------PGANILLPRPGFPLYDTRAIYSGL---EVRYYDLLPEKDWEIDLD  190 (447)
T ss_pred             ceEEeccchHHHHHHHHHhcC--------------CCCceecCCCCCchHHHhhhhcCc---eeEeecccCcccceechH
Confidence            589999999999999877654              445589999888888888889998   5666654  458899999


Q ss_pred             HHHHHHHHhhhcCCCcEEEEEeccCCccccc---cCHHHHHHHHHHcCCEEEEecccccccccccchhh--hhcCCCCcc
Q psy14299         82 FLEQTIQTSLAEKKIPLFVNATAGTTVLGAF---DPLDEIATVCEKYDLWMHVDACWGGSLIFSEKYSF--VLKGINRAN  156 (448)
Q Consensus        82 ~Le~~l~~~~~~~~~~~lVv~~~~~t~tG~~---~~l~~I~~ia~~~g~~l~VD~A~~~~~~~~~~~~~--~~~~~~~aD  156 (448)
                      .+|.++++      ++.++++..++|+.|.+   +-|++|+++|+++|+.++-|..|+-.++....+-.  .+..  .+-
T Consensus       191 ~veal~DE------NT~AivviNP~NPcGnVys~~HL~kiae~A~klgi~vIaDEVY~~~vfg~~pfvpmg~fss--iVP  262 (447)
T KOG0259|consen  191 GVEALADE------NTVAIVVINPNNPCGNVYSEDHLKKIAETAKKLGIMVIADEVYGHTVFGDKPFVPMGKFSS--IVP  262 (447)
T ss_pred             HHHHhhcc------CeeEEEEeCCCCCCcccccHHHHHHHHHHHHHhCCeEEehhhcceeecCCCCccchhhccc--cCc
Confidence            99999977      58999999999999976   45999999999999999999988765442111100  0111  133


Q ss_pred             EEEE-CCccccCCC-CceEEEEEeccchhhhhccCCcccccccCcccccccCCCCCcccCCCCchhHHHHHHHHHhC-hH
Q psy14299        157 SVSW-NPHKMLGAP-LQCSILLIKEKGLLHQANATAATYLFQQDKFYDVSFDTGDKSVQCGRKVDAFKLWLMWKARG-NL  233 (448)
Q Consensus       157 ~~~~-s~hK~l~~P-~g~G~l~vr~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g-~~  233 (448)
                      +++. +..|-...| .-.|.+.+.+..=          .+.+                                 -+ ..
T Consensus       263 VitlggisKrW~VPGWRlGWi~~hD~~g----------vf~~---------------------------------~~~~q  299 (447)
T KOG0259|consen  263 VITLGGISKRWIVPGWRLGWIALHDPRG----------VFRD---------------------------------TKVVQ  299 (447)
T ss_pred             eEeecccccccccCCceeeeEEEecccc----------cccc---------------------------------hHHHH
Confidence            4443 334533333 3345555533310          0000                                 00 01


Q ss_pred             HHHHHHHHhhhhccCCCccchhhhhhhhhhhhhhhhhhhhhhhccccccccccCCCCCccccccchhhHHHHHHHHHhcC
Q psy14299        234 GFRHFVDNAVDCSRGSMTFSTLLCFDLQGLLHQANATAATYLFQQDKFYDVSFDTGDKSVQCGRKVDAFKLWLMWKARGN  313 (448)
Q Consensus       234 g~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  313 (448)
                      ++.+.++....    -.                                               ..-+-++-.-|..-.+
T Consensus       300 ~~~~~~~~~~~----p~-----------------------------------------------TiiQ~AlP~IL~kTp~  328 (447)
T KOG0259|consen  300 GIKNFLDIIPG----PA-----------------------------------------------TIIQGALPDILEKTPE  328 (447)
T ss_pred             HHHHHHhccCC----cc-----------------------------------------------HhHHHHhHHHHHhChH
Confidence            22221111100    00                                               0001111222333345


Q ss_pred             ccHHHHHHHHHHHHHHHHHHhhcCCCeEEeccCCceeeEEEEeeccC-CCccccchhhhhhhhhhhHHHHHHHHhCCcEE
Q psy14299        314 LGFRHFVDNAVDCSRYFLSQISQRPGFRLVIPEFQCTNICFWFIPVS-LRDKVEDETWWSTLSKVAPRIKEKLVLGGTLM  392 (448)
Q Consensus       314 ~G~~~~~~~~~~l~~~~~~~L~~~pg~~l~~~~~~~~~v~f~~~~~~-~~~~~~~~~~~~~~~~~~~~i~~~L~~~g~~~  392 (448)
                      +=|+....-..++++...+.|+++|++... ..|...++...-.+-. +.+..           ....+.++|.++-.++
T Consensus       329 efF~k~~~~lk~na~l~y~~Lk~IP~l~cp-~kPeg~mylmv~l~~s~~~~~~-----------dD~dFc~kL~~Eesv~  396 (447)
T KOG0259|consen  329 EFFDKKLSFLKSNADLCYSRLKDIPCLTCP-VKPEGCMYLMVKLNLSLFPDIE-----------DDVDFCQKLAREESVI  396 (447)
T ss_pred             HHHHHHHHHHHhhHHHHHHHHhcCCCcccC-cCCCcceEEEeccchhhhcccc-----------ccHHHHHHHhhhcceE
Confidence            557777888889999999999999999865 5666665554322111 11100           1136888888776676


Q ss_pred             EEeeecCCcccccEEEEEecCCCCCCHHHHHHHHHHHHHHHHHhH
Q psy14299        393 IGYQPLQHRNLHNFFRLVTTCHPASSRQDMDYAIDQIELRGAEVD  437 (448)
Q Consensus       393 ~~~~~~~g~~~~~~lRis~~~~~~~t~edid~l~~al~~~~~~~~  437 (448)
                      +-|+...|.  ++|+|++++    ...+.++..++.|++...+..
T Consensus       397 ~LPG~af~~--~nw~Ri~i~----~~~~~leea~~Rik~Fc~RH~  435 (447)
T KOG0259|consen  397 CLPGQAFGL--KNWLRIVIT----VEEEMLEEAFSRIKEFCDRHS  435 (447)
T ss_pred             EeccccccC--CCeEEEEEc----cChHHHHHHHHHHHHHHHhhh
Confidence            666655554  599999996    367788888888888876654

>PRK02936 argD acetylornithine aminotransferase; Provisional

Probab=99.52  E-value=1.5e-11  Score=125.13  Aligned_cols=151  Identities=17%  Similarity=0.142  Sum_probs=97.9

Q ss_pred             cEEEeCcHHHHHHHHHHHHHHhcCCcccccCCCCCCCeEEEecCCCchHHHHHHHHhCCCC---------CcEEEEecCC
Q psy14299          4 KPFLLPGGSISNMYSICLARYRLDPDTKRKGLSHLPPLCMFTSEDSHYSMLKAAHWLGIGM---------DNVIRVKTNE   74 (448)
Q Consensus         4 ~g~~t~ggT~an~~al~~a~~~~~~~~~~~G~~~~~~~~Vl~~~~~H~s~~~~~~~~g~~~---------~~v~~v~~~~   74 (448)
                      .++|+++|++||..|+..++...           .++.+|..+...|-+........+...         ..+..+|.+ 
T Consensus        88 ~~~~~~sG~~a~~~A~~~a~~~~-----------g~~~vi~~~~~~Hg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-  155 (377)
T PRK02936         88 LVFFCNSGAEANEAALKLARKHT-----------GKSKIVTFEQSFHGRTFGTMSATGQEKIKEGFGPLLPGFTHVPFN-  155 (377)
T ss_pred             EEEEeCCcHHHHHHHHHHHHHhc-----------CCCeEEEECCCcCCCcHHhhhccCCccccccCCCCCCCceEeCCC-
Confidence            47899999999999999877531           134466666788877776666544311         012233332 


Q ss_pred             CCCcCHHHHHHHHHHhhhcCCCcEEEEEeccCCcccccc----CHHHHHHHHHHcCCEEEEecccccccccccchhhhhc
Q psy14299         75 RGQMICSFLEQTIQTSLAEKKIPLFVNATAGTTVLGAFD----PLDEIATVCEKYDLWMHVDACWGGSLIFSEKYSFVLK  150 (448)
Q Consensus        75 ~g~id~e~Le~~l~~~~~~~~~~~lVv~~~~~t~tG~~~----~l~~I~~ia~~~g~~l~VD~A~~~~~~~~~~~~~~~~  150 (448)
                          |++++++.+.+      ++++|++....++.|...    ++++|.++|++||+++++|++|.+.............
T Consensus       156 ----d~~~l~~~~~~------~~~~ii~e~i~~~~G~~~~~~~~l~~l~~l~~~~~~~lI~DEv~~g~g~~g~~~~~~~~  225 (377)
T PRK02936        156 ----DIKALKEVMNE------EVAAVMLEVVQGEGGVIPADPAFLQEVQTLCKKFGALLIIDEVQTGIGRTGTLFAYEQF  225 (377)
T ss_pred             ----CHHHHHHhccC------CeEEEEEecccCCCCCccCCHHHHHHHHHHHHHcCCEEEEeccccCCCcCchhhHHHhh
Confidence                78999988853      477888888888777653    3999999999999999999998642111111110011


Q ss_pred             CCCCccEEEECCccccCCCCceEEEEEec
Q psy14299        151 GINRANSVSWNPHKMLGAPLQCSILLIKE  179 (448)
Q Consensus       151 ~~~~aD~~~~s~hK~l~~P~g~G~l~vr~  179 (448)
                      ++ ..|.+  +..|.+++-...|++..++
T Consensus       226 ~~-~~di~--t~sK~l~~G~~ig~v~~~~  251 (377)
T PRK02936        226 GL-DPDIV--TVAKGLGNGIPVGAMIGKK  251 (377)
T ss_pred             CC-CCcEE--EEcccccCCCccEEEEEcH
Confidence            22 24655  4689887423466666543

>PRK03715 argD acetylornithine transaminase protein; Provisional

Probab=99.52  E-value=4.8e-12  Score=129.62  Aligned_cols=161  Identities=18%  Similarity=0.099  Sum_probs=106.4

Q ss_pred             cEEEeCcHHHHHHHHHHHHHHhcCCcccccCCCCCCCeEEEecCCCchHHHHHHHHhCCCCCcEEEEecCCCC----CcC
Q psy14299          4 KPFLLPGGSISNMYSICLARYRLDPDTKRKGLSHLPPLCMFTSEDSHYSMLKAAHWLGIGMDNVIRVKTNERG----QMI   79 (448)
Q Consensus         4 ~g~~t~ggT~an~~al~~a~~~~~~~~~~~G~~~~~~~~Vl~~~~~H~s~~~~~~~~g~~~~~v~~v~~~~~g----~id   79 (448)
                      .++|+++||+||..|+..++....     .+-+ ....+|......|-+...++...+....+....|...+.    .-|
T Consensus        95 ~v~f~~SGseA~e~Aik~ar~~~~-----~~~~-~r~~ii~~~~~yHG~t~~~~~~s~~~~~~~~~~~~~~~~~~~~~~d  168 (395)
T PRK03715         95 KVFFANSGAEANEGAIKLARKWGR-----KHKN-GAYEIITFDHSFHGRTLATMSASGKPGWDTIFAPQVPGFPKAELND  168 (395)
T ss_pred             EEEEeCCcHHHHHHHHHHHHHHhh-----ccCC-CCcEEEEECCCcCCChHHHHhhcCCcccccCCCCCCCCceeeCCch
Confidence            479999999999999999986411     0101 134567778889999888877666421011111111111    237


Q ss_pred             HHHHHHHHHHhhhcCCCcEEEEEeccCCccccccC----HHHHHHHHHHcCCEEEEecccccccccccc-hhhhhcCCCC
Q psy14299         80 CSFLEQTIQTSLAEKKIPLFVNATAGTTVLGAFDP----LDEIATVCEKYDLWMHVDACWGGSLIFSEK-YSFVLKGINR  154 (448)
Q Consensus        80 ~e~Le~~l~~~~~~~~~~~lVv~~~~~t~tG~~~~----l~~I~~ia~~~g~~l~VD~A~~~~~~~~~~-~~~~~~~~~~  154 (448)
                      ++++++.+.+      ++.+|++.....+.|.+.|    +++|.++|++||+++++|++|.+ .-.... +.....++ .
T Consensus       169 ~~~l~~~l~~------~~aavi~Epv~~~gG~~~~~~~~l~~l~~l~~~~~~llI~DEv~tG-~GRtG~~~a~~~~gv-~  240 (395)
T PRK03715        169 IASVEKLITD------KTVAVMLEPVQGEGGVIPATREFMQQLRALTKQHGLLLIVDEVQTG-CGRTGTLFAYELSGI-E  240 (395)
T ss_pred             HHHHHHHcCC------CceEEEEeCCcCCCCCccCCHHHHHHHHHHHHHcCCEEEEeccccC-CCCCcchhhHhhcCC-C
Confidence            8888888853      4678888888888888877    99999999999999999999884 211111 11111233 3


Q ss_pred             ccEEEECCccccCCCCceEEEEEecc
Q psy14299        155 ANSVSWNPHKMLGAPLQCSILLIKEK  180 (448)
Q Consensus       155 aD~~~~s~hK~l~~P~g~G~l~vr~~  180 (448)
                      .|++++  .|.+++....|.++.+++
T Consensus       241 PDi~t~--gK~lg~G~p~~av~~~~~  264 (395)
T PRK03715        241 PDIMTL--GKGIGGGVPLAALLAKAE  264 (395)
T ss_pred             Cceeee--hhhhhCCcceEEEEEccc
Confidence            688766  498887555777777654

>TIGR00474 selA seryl-tRNA(sec) selenium transferase

Probab=99.52  E-value=3.4e-12  Score=132.13  Aligned_cols=150  Identities=13%  Similarity=0.115  Sum_probs=105.6

Q ss_pred             cEEEeCcHHHHHHHHHHHHHHhcCCcccccCCCCCCCeEEEecCCCch------HHHHHHHHhCCCCCcEEEEecCCCCC
Q psy14299          4 KPFLLPGGSISNMYSICLARYRLDPDTKRKGLSHLPPLCMFTSEDSHY------SMLKAAHWLGIGMDNVIRVKTNERGQ   77 (448)
Q Consensus         4 ~g~~t~ggT~an~~al~~a~~~~~~~~~~~G~~~~~~~~Vl~~~~~H~------s~~~~~~~~g~~~~~v~~v~~~~~g~   77 (448)
                      ..+++++|+.|++.++.. ..              +++.|++++.+|.      ++...++..|+   +++.++.+  ..
T Consensus       139 ~alvv~sg~aAi~l~l~~-l~--------------~GdeVIvs~~e~v~~ggs~~i~~~~~~~G~---~~~~v~~~--~~  198 (454)
T TIGR00474       139 DALVVNNNAAAVLLALNT-LA--------------KGKEVIVSRGELVEIGGSFRIPDVMEQSGA---KLVEVGTT--NR  198 (454)
T ss_pred             cEEEECCHHHHHHHHHHH-hC--------------CcCEEEECCChhhhhcchhhHHHHHHHcCC---EEEEeCCC--CC
Confidence            357889999998777743 22              5667888987764      23445566677   67777653  34


Q ss_pred             cCHHHHHHHHHHhhhcCCCcEEEEEeccCCc--cc--cccCHHHHHHHHHHcCCEEEEeccccccc----ccccchhhhh
Q psy14299         78 MICSFLEQTIQTSLAEKKIPLFVNATAGTTV--LG--AFDPLDEIATVCEKYDLWMHVDACWGGSL----IFSEKYSFVL  149 (448)
Q Consensus        78 id~e~Le~~l~~~~~~~~~~~lVv~~~~~t~--tG--~~~~l~~I~~ia~~~g~~l~VD~A~~~~~----~~~~~~~~~~  149 (448)
                      .+++++++++.+      ++++|++++.+|+  .|  ...|+++|+++||+||++++||.+.|...    +-.+..+...
T Consensus       199 ~~l~dle~aI~~------~T~lv~~~h~sN~~~~G~~~~~dl~~I~~la~~~g~~vivD~~sG~l~~~~~~gl~~~p~~~  272 (454)
T TIGR00474       199 THLKDYEDAITE------NTALLLKVHTSNYRIVGFTEEVSIAELVALGREHGLPVMEDLGSGSLVDLSRYGLPDEPTVQ  272 (454)
T ss_pred             CCHHHHHHhcCc------CCEEEEEEccCcccccCCCCCCCHHHHHHHHHHcCCeEEEECCCcccccchhccCCCCcccc
Confidence            589999999864      5889999999886  46  47899999999999999999998644310    0000000000


Q ss_pred             cC-CCCccEEEECCccccCCCCceEEEEEecc
Q psy14299        150 KG-INRANSVSWNPHKMLGAPLQCSILLIKEK  180 (448)
Q Consensus       150 ~~-~~~aD~~~~s~hK~l~~P~g~G~l~vr~~  180 (448)
                      .. -.++|++++|+|||+++|. .|+++.+++
T Consensus       273 ~~~~~GaDiv~fSg~K~LgGp~-~G~i~g~~~  303 (454)
T TIGR00474       273 EVIAAGVDLVTFSGDKLLGGPQ-AGIIVGKKE  303 (454)
T ss_pred             cHhHcCCCEEEecCccccCCCe-EEEEEECHH
Confidence            00 1258999999999999994 788887653

In bacteria, the incorporation of selenocysteine as the 21st amino acid, encoded by TGA, requires several elements: SelC is the tRNA itself, SelD acts as a donor of reduced selenium, SelA modifies a serine residue on SelC into selenocysteine, and SelB is a selenocysteine-specific translation elongation factor. 3-prime or 5-prime non-coding elements of mRNA have been found as probable structures for directing selenocysteine incorporation. This model describes SelA. This model excludes homologs that appear to differ in function from Frankia alni, Helicobacter pylori, Methanococcus jannaschii and other archaea, and so on.

>COG1167 ARO8 Transcriptional regulators containing a DNA-binding HTH domain and an aminotransferase domain (MocR family) and their eukaryotic orthologs [Transcription / Amino acid transport and metabolism]

Probab=99.51  E-value=7.7e-12  Score=130.42  Aligned_cols=290  Identities=14%  Similarity=0.096  Sum_probs=188.8

Q ss_pred             cEEEeCcHHHHHHHHHHHHHHhcCCcccccCCCCCCCeEEEecCCCchHHHHHHHHhCCCCCcEEEEecCCCCCcCHHHH
Q psy14299          4 KPFLLPGGSISNMYSICLARYRLDPDTKRKGLSHLPPLCMFTSEDSHYSMLKAAHWLGIGMDNVIRVKTNERGQMICSFL   83 (448)
Q Consensus         4 ~g~~t~ggT~an~~al~~a~~~~~~~~~~~G~~~~~~~~Vl~~~~~H~s~~~~~~~~g~~~~~v~~v~~~~~g~id~e~L   83 (448)
                      ..++|+|++.|+.+++.+..+              |++.|++.+.+|+....+.+..|+   +++.||.| +..+|+++|
T Consensus       157 ~IiiT~G~q~al~l~~~~l~~--------------pGd~v~vE~PtY~~~~~~~~~~g~---~~~~vp~d-~~G~~~e~l  218 (459)
T COG1167         157 QIVITSGAQQALDLLLRLLLD--------------PGDTVLVEDPTYPGALQALEALGA---RVIPVPVD-EDGIDPEAL  218 (459)
T ss_pred             eEEEeCCHHHHHHHHHHHhCC--------------CCCEEEEcCCCcHHHHHHHHHcCC---cEEecCCC-CCCCCHHHH
Confidence            478999999998776655444              788999999999999999999999   89999998 455899999


Q ss_pred             HHHHHHhhhcCCCcEEE-EEeccCCccccccCH---HHHHHHHHHcCCEEEEecccccccccccchhhhhcCCC--CccE
Q psy14299         84 EQTIQTSLAEKKIPLFV-NATAGTTVLGAFDPL---DEIATVCEKYDLWMHVDACWGGSLIFSEKYSFVLKGIN--RANS  157 (448)
Q Consensus        84 e~~l~~~~~~~~~~~lV-v~~~~~t~tG~~~~l---~~I~~ia~~~g~~l~VD~A~~~~~~~~~~~~~~~~~~~--~aD~  157 (448)
                      ++.+++.     +++++ +.....|+||...++   ++|.++|++||++++-|..++-.......... +..+.  .-=+
T Consensus       219 e~~~~~~-----~~k~~y~~P~~qNPtG~tms~~rR~~Ll~lA~~~~~~IIEDD~y~el~~~~~p~~~-l~~ld~~~rVi  292 (459)
T COG1167         219 EEALAQW-----KPKAVYVTPTFQNPTGVTMSLERRKALLALAEKYDVLIIEDDYYGELRYDGPPPPP-LKALDAPGRVI  292 (459)
T ss_pred             HHHHhhc-----CCcEEEECCCCCCCCCCccCHHHHHHHHHHHHHcCCeEEeeCcchhhhcCCCCCCC-hHhhCCCCCEE
Confidence            9999863     45554 445678899998886   56999999999999999998876653221110 11111  1237


Q ss_pred             EEECCccccCCCCceEEEEEeccchhhhhccCCcccccccCcccccccCCCCCcccCCCCchhHHHHHHHHHhChHHHHH
Q psy14299        158 VSWNPHKMLGAPLQCSILLIKEKGLLHQANATAATYLFQQDKFYDVSFDTGDKSVQCGRKVDAFKLWLMWKARGNLGFRH  237 (448)
Q Consensus       158 ~~~s~hK~l~~P~g~G~l~vr~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~g~~~  237 (448)
                      ++.|+.|.+..-..+|+++... .+....... ......                 .+..+.-..+...+. .|  .+.+
T Consensus       293 y~gSFSK~l~PglRlG~vv~p~-~~~~~~~~~-k~~~~~-----------------~~s~~~Q~~la~~l~-~G--~~~~  350 (459)
T COG1167         293 YLGSFSKTLAPGLRLGYVVAPP-ELIEKLLRL-KQAADL-----------------GPSSLSQAALAAFLL-SG--HYDR  350 (459)
T ss_pred             EEeeehhhcccccceeeeeCCH-HHHHHHHHH-HHHhcC-----------------CCChHHHHHHHHHHH-cC--CHHH
Confidence            7789999998777888877644 333222110 000000                 000000000000001 11  1222


Q ss_pred             HHHHhhhhccCCCccchhhhhhhhhhhhhhhhhhhhhhhccccccccccCCCCCccccccchhhHHHHHHHHHhcCccHH
Q psy14299        238 FVDNAVDCSRGSMTFSTLLCFDLQGLLHQANATAATYLFQQDKFYDVSFDTGDKSVQCGRKVDAFKLWLMWKARGNLGFR  317 (448)
Q Consensus       238 ~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~  317 (448)
                                                                                                   .++
T Consensus       351 -----------------------------------------------------------------------------hl~  353 (459)
T COG1167         351 -----------------------------------------------------------------------------HLR  353 (459)
T ss_pred             -----------------------------------------------------------------------------HHH
Confidence                                                                                         133


Q ss_pred             HHHHHHHHHHHHHHHHhhcCC--CeEEeccCCceeeEEEEeeccCCCccccchhhhhhhhhhhHHHHHHHHhCCcEEEEe
Q psy14299        318 HFVDNAVDCSRYFLSQISQRP--GFRLVIPEFQCTNICFWFIPVSLRDKVEDETWWSTLSKVAPRIKEKLVLGGTLMIGY  395 (448)
Q Consensus       318 ~~~~~~~~l~~~~~~~L~~~p--g~~l~~~~~~~~~v~f~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~L~~~g~~~~~~  395 (448)
                      +++..+.+..+.+.+.|.+..  ++++  ..|..+.+.+.-.|++++               ..++.+...++|+.+..+
T Consensus       354 ~lR~~y~~rr~~l~~~L~~~~~~~~~~--~~p~gG~flwl~l~~~~~---------------~~~l~~~a~~~gv~i~~~  416 (459)
T COG1167         354 RLRREYARRRDALLEALAEYLPELATW--TRPEGGLFLWLELPEGID---------------ARELLAAALEKGVVVTPL  416 (459)
T ss_pred             HHHHHHHHHHHHHHHHHHHhCCCCeee--ecCCceEEEEEEcCCCCC---------------HHHHHHHHHHCCCEEEcC
Confidence            455566777788888888863  3444  456667777765565554               237888999998666553


Q ss_pred             eecCCc--ccccEEEEEecCCCCCCHHHHHHHHHHHHHHHHHh
Q psy14299        396 QPLQHR--NLHNFFRLVTTCHPASSRQDMDYAIDQIELRGAEV  436 (448)
Q Consensus       396 ~~~~g~--~~~~~lRis~~~~~~~t~edid~l~~al~~~~~~~  436 (448)
                      +.....  ...+++|+++.   +.+++++++.++.|.++.++.
T Consensus       417 g~~f~~~~~~~~~~Rl~~s---~~~~e~i~~gi~~l~~~~~~~  456 (459)
T COG1167         417 GSAFSADGDPRNGLRLSFS---SPSEEEIEEGIKRLAALLREA  456 (459)
T ss_pred             CccccCCCCCCCeEEEEcC---CCCHHHHHHHHHHHHHHHHHH
Confidence            433322  12469999995   567899999988888887654

>PRK02627 acetylornithine aminotransferase; Provisional

Probab=99.51  E-value=1.4e-11  Score=126.14  Aligned_cols=162  Identities=20%  Similarity=0.136  Sum_probs=96.0

Q ss_pred             cEEEeCcHHHHHHHHHHHHHHhcCCcccccCCCCCCCeEEEecCCCchHHHHHHHHhCCCCCcEEEEecCCCC----CcC
Q psy14299          4 KPFLLPGGSISNMYSICLARYRLDPDTKRKGLSHLPPLCMFTSEDSHYSMLKAAHWLGIGMDNVIRVKTNERG----QMI   79 (448)
Q Consensus         4 ~g~~t~ggT~an~~al~~a~~~~~~~~~~~G~~~~~~~~Vl~~~~~H~s~~~~~~~~g~~~~~v~~v~~~~~g----~id   79 (448)
                      ..+||+||++||..++.+++....    +.+.  .++.++......|-....+....+....+....+..++.    ..|
T Consensus        98 ~v~~~~gg~eA~~~al~~a~~~~~----~~~~--~~~~ii~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d  171 (396)
T PRK02627         98 KVFFCNSGAEANEAAIKLARKYGH----KKGI--EKPEIITAENSFHGRTLATLSATGQPKYQEGFEPLVEGFIYVPFND  171 (396)
T ss_pred             EEEECCCcHHHHHHHHHHHHHHhc----ccCC--CCCeEEEECCCcCcccHHHHHhcCCccccccCCCCCCCceEeCCCC
Confidence            478999999999999998876521    0011  013345555566655444444333210000011111111    118


Q ss_pred             HHHHHHHHHHhhhcCCCcEEEEEeccCCccccc----cCHHHHHHHHHHcCCEEEEecccccccccccchhhhhcCCCCc
Q psy14299         80 CSFLEQTIQTSLAEKKIPLFVNATAGTTVLGAF----DPLDEIATVCEKYDLWMHVDACWGGSLIFSEKYSFVLKGINRA  155 (448)
Q Consensus        80 ~e~Le~~l~~~~~~~~~~~lVv~~~~~t~tG~~----~~l~~I~~ia~~~g~~l~VD~A~~~~~~~~~~~~~~~~~~~~a  155 (448)
                      ++++++++.+      ++++|+++.+.+++|..    +.+++|.++|++||+++++|++|++.............++ ..
T Consensus       172 ~~~l~~~i~~------~~~~vii~p~~~~~G~~~~~~~~l~~l~~l~~~~~~~lI~DE~~~g~g~~g~~~~~~~~~~-~p  244 (396)
T PRK02627        172 IEALKAAITD------KTAAVMLEPIQGEGGVNPADKEYLQALRELCDENGILLILDEVQTGMGRTGKLFAYQHYGI-EP  244 (396)
T ss_pred             HHHHHHhcCC------CeEEEEEecccCCCCCccCCHHHHHHHHHHHHHcCCEEEEechhcCCCccCceeeehhcCC-CC
Confidence            9999998843      57888888888888842    2489999999999999999999884311111011111122 24


Q ss_pred             cEEEECCccccCCCCceEEEEEecc
Q psy14299        156 NSVSWNPHKMLGAPLQCSILLIKEK  180 (448)
Q Consensus       156 D~~~~s~hK~l~~P~g~G~l~vr~~  180 (448)
                      |.++  ..|.+++...+|.++.+++
T Consensus       245 di~t--~sK~~~~G~rig~~~~~~~  267 (396)
T PRK02627        245 DIMT--LAKGLGGGVPIGAVLAKEK  267 (396)
T ss_pred             CEEE--EcchhhCCcccEEEEEcHH
Confidence            6655  4698885456788777543

>KOG0256|consensus

Probab=99.50  E-value=8e-12  Score=122.59  Aligned_cols=299  Identities=12%  Similarity=0.129  Sum_probs=189.7

Q ss_pred             EEEeCcHHHHHHHHHHHHHHhcCCcccccCCCCCCCeEEEecCCCchHHHHHHH-HhCCCCCcEEEEecCC--CCCcCHH
Q psy14299          5 PFLLPGGSISNMYSICLARYRLDPDTKRKGLSHLPPLCMFTSEDSHYSMLKAAH-WLGIGMDNVIRVKTNE--RGQMICS   81 (448)
Q Consensus         5 g~~t~ggT~an~~al~~a~~~~~~~~~~~G~~~~~~~~Vl~~~~~H~s~~~~~~-~~g~~~~~v~~v~~~~--~g~id~e   81 (448)
                      .++|.|+|-+|-..+.++..              |++..+++...+..+..-++ ..|+   ++++|.+..  +.+++++
T Consensus       149 ~Vv~~G~T~ane~l~fcLad--------------pgdafLvPtPyY~gfdrdl~~rTgv---eivpv~c~Ss~~f~itv~  211 (471)
T KOG0256|consen  149 VVVTNGATSANETLMFCLAD--------------PGDAFLVPTPYYPGFDRDLRWRTGV---EIVPVHCSSSNGFQITVE  211 (471)
T ss_pred             eEEecccchhhHHHHHHhcC--------------CCceeeecCCCCCcccccceeccCc---eEEEEEeecCCCccccHH
Confidence            67889999998776666554              77888999888888876666 4466   677777654  4599999


Q ss_pred             HHHHHHHHhhhcCCCcEEEEEeccCCccccccC---HHHHHHHHHHcCCEEEEecccccccccccchhhhhc---CCC-C
Q psy14299         82 FLEQTIQTSLAEKKIPLFVNATAGTTVLGAFDP---LDEIATVCEKYDLWMHVDACWGGSLIFSEKYSFVLK---GIN-R  154 (448)
Q Consensus        82 ~Le~~l~~~~~~~~~~~lVv~~~~~t~tG~~~~---l~~I~~ia~~~g~~l~VD~A~~~~~~~~~~~~~~~~---~~~-~  154 (448)
                      +||+++.+..+.+.+++.|+++.|+|+.|...+   +..+.+++.++++.+++|..|++.++....+.....   ... .
T Consensus       212 alE~A~~~A~~~~~kVkGvlitNPsNPLG~~~~~e~L~~ll~Fa~~kniHvI~DEIya~sVF~~~~F~Sv~ev~~~~~~~  291 (471)
T KOG0256|consen  212 ALEAALNQARKLGLKVKGVLITNPSNPLGTTLSPEELISLLNFASRKNIHVISDEIYAGSVFDKSEFRSVLEVRKDPHLD  291 (471)
T ss_pred             HHHHHHHHHHHhCCceeEEEEeCCCCCCCCccCHHHHHHHHHHHhhcceEEEeehhhcccccCccCceEHHHHhhccccC
Confidence            999999998888999999999999999998866   555667788999999999999887763332211100   000 1


Q ss_pred             cc--EEEECCccccCCC-CceEEEEEeccchhhhhccCCcccccccCcccccccCCCCCcccCCCCchhHHHHHHHHHhC
Q psy14299        155 AN--SVSWNPHKMLGAP-LQCSILLIKEKGLLHQANATAATYLFQQDKFYDVSFDTGDKSVQCGRKVDAFKLWLMWKARG  231 (448)
Q Consensus       155 aD--~~~~s~hK~l~~P-~g~G~l~vr~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g  231 (448)
                      .|  -++.+..|=+|.| .-.|++|..++.....+.. ...|- .                                   
T Consensus       292 ~~rvHivyslSKD~GlpGfRvGviYS~ne~VvsaA~k-mssf~-~-----------------------------------  334 (471)
T KOG0256|consen  292 PDRVHIVYSLSKDFGLPGFRVGVIYSNNEDVVSAATK-MSSFG-L-----------------------------------  334 (471)
T ss_pred             CCcEEEEEEeccccCCCceEEEEEEecChHHHHHHHH-Hhhcc-C-----------------------------------
Confidence            12  4566888988877 3467777766655443321 11111 0                                   


Q ss_pred             hHHHHHHHHHhhhhccCCCccchhhhhhhhhhhhhhhhhhhhhhhccccccccccCCCCCccccccchhhHHHHHHHHHh
Q psy14299        232 NLGFRHFVDNAVDCSRGSMTFSTLLCFDLQGLLHQANATAATYLFQQDKFYDVSFDTGDKSVQCGRKVDAFKLWLMWKAR  311 (448)
Q Consensus       232 ~~g~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  311 (448)
                      ..+..++             +.+.|++|-+                                                 .
T Consensus       335 vSs~tQ~-------------~la~LLSD~~-------------------------------------------------f  352 (471)
T KOG0256|consen  335 VSSQTQY-------------LLASLLSDEE-------------------------------------------------F  352 (471)
T ss_pred             CcHHHHH-------------HHHHHhchHH-------------------------------------------------H
Confidence            0011110             1111222211                                                 0


Q ss_pred             cCccHHHHHHHHHHHHHHHHHHhhcCCCeEEeccCCceeeEEEEeeccCCCccccchhhhhhhhhhhHHHHHHHHhCCcE
Q psy14299        312 GNLGFRHFVDNAVDCSRYFLSQISQRPGFRLVIPEFQCTNICFWFIPVSLRDKVEDETWWSTLSKVAPRIKEKLVLGGTL  391 (448)
Q Consensus       312 ~~~G~~~~~~~~~~l~~~~~~~L~~~pg~~l~~~~~~~~~v~f~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~L~~~g~~  391 (448)
                      -.+-+++..+|....-+|+.+.|+++ |+..+  +...+.+++.-...-++..+...    +     .++.++++..-.+
T Consensus       353 ~~~yl~en~~Rl~~rh~~~~~gLk~l-gI~cl--~s~AGlF~wvDlr~lL~s~tfe~----E-----l~Lw~~i~~~vkl  420 (471)
T KOG0256|consen  353 TREYLRENNKRLRIRHRYIVEGLKAL-GIPCL--KSNAGLFCWVDLRKLLTSLTFEG----E-----LELWERILDNVKL  420 (471)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhhHHhc-CCcee--ecCCeeEEEEEhHHhcCcCChHH----H-----HHHHHHHHHhhcc
Confidence            11223445555666678888999998 88875  56778888743222222221111    1     2577777777337


Q ss_pred             EEEeeecCCcccccEEEEEecCCCCCCHHHHHHHHHHHHHHHH
Q psy14299        392 MIGYQPLQHRNLHNFFRLVTTCHPASSRQDMDYAIDQIELRGA  434 (448)
Q Consensus       392 ~~~~~~~~g~~~~~~lRis~~~~~~~t~edid~l~~al~~~~~  434 (448)
                      .++|+.......+||+|+++.   ...++.++-.++.|+....
T Consensus       421 nlSpG~s~~C~EpGWFRvcFA---n~~~~t~~~am~Ri~~~~~  460 (471)
T KOG0256|consen  421 NLSPGSSCHCHEPGWFRVCFA---NMSEETLEVAMRRLKQFLD  460 (471)
T ss_pred             ccCCCCcceecCCCeEEEEec---cCCHHHHHHHHHHHHHHHH
Confidence            777776655556799999996   3444444445555555544

>PRK07392 threonine-phosphate decarboxylase; Validated

Probab=99.50  E-value=2.5e-11  Score=122.78  Aligned_cols=149  Identities=11%  Similarity=-0.006  Sum_probs=102.3

Q ss_pred             cEEEeCcHHHHHHHHHHHHHHhcCCcccccCCCCCCCeEEEecCCCchHHHHHHHHhCCCCCcEEEEecCCCCC-----c
Q psy14299          4 KPFLLPGGSISNMYSICLARYRLDPDTKRKGLSHLPPLCMFTSEDSHYSMLKAAHWLGIGMDNVIRVKTNERGQ-----M   78 (448)
Q Consensus         4 ~g~~t~ggT~an~~al~~a~~~~~~~~~~~G~~~~~~~~Vl~~~~~H~s~~~~~~~~g~~~~~v~~v~~~~~g~-----i   78 (448)
                      ..++|+|+++++.+++.+. .              +++.|+++...+..+...++..|.   +++.+|.++++.     .
T Consensus        76 ~I~it~G~~~~i~~~~~~l-~--------------~g~~vlv~~P~y~~~~~~~~~~g~---~~~~v~~~~~~~~~~~~~  137 (360)
T PRK07392         76 WILPGNGAAELLTWAGREL-A--------------QLRAVYLITPAFGDYRRALRAFGA---TVKELPLPLDQPSPGLTL  137 (360)
T ss_pred             hEEECCCHHHHHHHHHHHh-C--------------CCCeEEEECCCcHHHHHHHHHcCC---eEEEEecccccCCccccc
Confidence            3678999999987766542 2              234688888999999999999998   788999875543     3


Q ss_pred             CHHHHHHHHHHhhhcCCCcEEEEEeccCCccccccCHHHHHHHHHHcCCEEEEecccccccccccchh--hhhcCCCCcc
Q psy14299         79 ICSFLEQTIQTSLAEKKIPLFVNATAGTTVLGAFDPLDEIATVCEKYDLWMHVDACWGGSLIFSEKYS--FVLKGINRAN  156 (448)
Q Consensus        79 d~e~Le~~l~~~~~~~~~~~lVv~~~~~t~tG~~~~l~~I~~ia~~~g~~l~VD~A~~~~~~~~~~~~--~~~~~~~~aD  156 (448)
                      +++.+++..       .++++++++.++|+||.+.+.++|.++++++++ +++|.+|.-.........  ......+ -=
T Consensus       138 ~~~~~~~~~-------~~~~~~~l~nP~NPTG~~~~~~~l~~l~~~~~~-~IiDE~y~~~~~~~~~~s~~~~~~~~~-~v  208 (360)
T PRK07392        138 RLQTLPPQL-------TPNDGLLLNNPHNPTGKLWSREAILPLLEQFAL-VVVDEAFMDFLPPDAEQSLIPCLAEYP-NL  208 (360)
T ss_pred             CHHHHHHhc-------cCCCEEEEeCCCCCCCCCcCHHHHHHHHHHCCE-EEEECchhhhccCccccchHHHhhcCC-CE
Confidence            444444322       246789999999999999999999999999985 777999875432110000  0111110 11


Q ss_pred             EEEECCccccCCC-CceEEEEEec
Q psy14299        157 SVSWNPHKMLGAP-LQCSILLIKE  179 (448)
Q Consensus       157 ~~~~s~hK~l~~P-~g~G~l~vr~  179 (448)
                      +++.|+.|.++.| .-+|+++..+
T Consensus       209 i~i~S~SK~~~l~GlRiG~~v~~~  232 (360)
T PRK07392        209 IILRSLTKFYSLPGLRLGYAIAHP  232 (360)
T ss_pred             EEEEechhhhcCCchheeeeeCCH
Confidence            5566889998844 4577766633

>COG2873 MET17 O-acetylhomoserine sulfhydrylase [Amino acid transport and metabolism]

Probab=99.50  E-value=5.5e-12  Score=122.60  Aligned_cols=142  Identities=15%  Similarity=0.099  Sum_probs=110.0

Q ss_pred             ccEEEeCcHHHHHHHHHHHHHHhcCCcccccCCCCCCCeEEEecCCCc----hHHHHHHHHhCCCCCcEEEEecCCCCCc
Q psy14299          3 LKPFLLPGGSISNMYSICLARYRLDPDTKRKGLSHLPPLCMFTSEDSH----YSMLKAAHWLGIGMDNVIRVKTNERGQM   78 (448)
Q Consensus         3 ~~g~~t~ggT~an~~al~~a~~~~~~~~~~~G~~~~~~~~Vl~~~~~H----~s~~~~~~~~g~~~~~v~~v~~~~~g~i   78 (448)
                      +.++.|.+|..|+.+++.....              +++.|+.+..-+    .-+....+.+|+   +++.+..+     
T Consensus        78 ~aa~a~aSG~AA~~~ai~~la~--------------aGD~iVss~~LYGGT~~lf~~tl~~~Gi---~v~fvd~~-----  135 (426)
T COG2873          78 VAALAVASGQAAITYAILNLAG--------------AGDNIVSSSKLYGGTYNLFSHTLKRLGI---EVRFVDPD-----  135 (426)
T ss_pred             hhhhhhccchHHHHHHHHHhcc--------------CCCeeEeeccccCchHHHHHHHHHhcCc---EEEEeCCC-----
Confidence            4567788888888888877655              455566554333    224445577788   79898876     


Q ss_pred             CHHHHHHHHHHhhhcCCCcEEEEEeccCCccccccCHHHHHHHHHHcCCEEEEecccccccccccchhhhhcCCCCccEE
Q psy14299         79 ICSFLEQTIQTSLAEKKIPLFVNATAGTTVLGAFDPLDEIATVCEKYDLWMHVDACWGGSLIFSEKYSFVLKGINRANSV  158 (448)
Q Consensus        79 d~e~Le~~l~~~~~~~~~~~lVv~~~~~t~tG~~~~l~~I~~ia~~~g~~l~VD~A~~~~~~~~~~~~~~~~~~~~aD~~  158 (448)
                      |++.++++|++      ++++|.+....|+.+.+-|+++|+++||++|++++||-..+..++.-| ..      .++|++
T Consensus       136 d~~~~~~aI~~------nTkavf~EtigNP~~~v~Die~ia~iAh~~gvpliVDNT~atpyl~rP-~~------hGADIV  202 (426)
T COG2873         136 DPENFEAAIDE------NTKAVFAETIGNPGLDVLDIEAIAEIAHRHGVPLIVDNTFATPYLCRP-IE------HGADIV  202 (426)
T ss_pred             CHHHHHHHhCc------ccceEEEEeccCCCccccCHHHHHHHHHHcCCcEEEecCCCcceecch-hh------cCCCEE
Confidence            89999999987      699999999999999999999999999999999999999887755322 11      158999


Q ss_pred             EECCccccCCC-CceEEEEEec
Q psy14299        159 SWNPHKMLGAP-LQCSILLIKE  179 (448)
Q Consensus       159 ~~s~hK~l~~P-~g~G~l~vr~  179 (448)
                      +-|..||+++. ..+|.+++..
T Consensus       203 vHS~TK~igGhGt~iGG~iVD~  224 (426)
T COG2873         203 VHSATKYIGGHGTAIGGVIVDG  224 (426)
T ss_pred             EEeecccccCCccccceEEEeC
Confidence            99999999886 4456666633

>TIGR03801 asp_4_decarbox aspartate 4-decarboxylase

Probab=99.49  E-value=8.5e-12  Score=130.84  Aligned_cols=157  Identities=13%  Similarity=0.118  Sum_probs=110.0

Q ss_pred             cEEEeCcHHHHHHHHHHHHHHh-cCCcccccCCCCCCCeEEEecCCCchHHHHHHHHhCCCCCcEEEEecCC--C-----
Q psy14299          4 KPFLLPGGSISNMYSICLARYR-LDPDTKRKGLSHLPPLCMFTSEDSHYSMLKAAHWLGIGMDNVIRVKTNE--R-----   75 (448)
Q Consensus         4 ~g~~t~ggT~an~~al~~a~~~-~~~~~~~~G~~~~~~~~Vl~~~~~H~s~~~~~~~~g~~~~~v~~v~~~~--~-----   75 (448)
                      ..++|+|+++++.+++.+.... +.          .|++.|++....+..+...+++.+.+. +++.++.++  +     
T Consensus       157 ~V~it~Gat~al~~~~~~l~~~~ll----------~pGD~Vlv~~P~y~~y~~~~~l~~~g~-~vv~i~~~~~~~~g~~~  225 (521)
T TIGR03801       157 DLFAVEGGTAAMCYIFDSLKANELL----------KKGDKIALMTPIFTPYLEIPELPRYDF-EVVRIKADEMTEDGTHT  225 (521)
T ss_pred             eEEEeCCHHHHHHHHHHHHhHhhcC----------CCCCEEEEeCCCcHHHHHHHHHhcCCc-EEEEeeccccccccccc
Confidence            6889999999988877653221 11          377889999999999999888875533 466777643  2     


Q ss_pred             CCcCHHHHHHHHHHhhhcCCCcEEEEEeccCCccccccC---HHHHHHHHHHc--CCEEEEecccccccccccchhhhhc
Q psy14299         76 GQMICSFLEQTIQTSLAEKKIPLFVNATAGTTVLGAFDP---LDEIATVCEKY--DLWMHVDACWGGSLIFSEKYSFVLK  150 (448)
Q Consensus        76 g~id~e~Le~~l~~~~~~~~~~~lVv~~~~~t~tG~~~~---l~~I~~ia~~~--g~~l~VD~A~~~~~~~~~~~~~~~~  150 (448)
                      +.+|++++++++++      ++++++++.++|+||.+.+   +++|+++|++|  +++++.|.+|+-...   .......
T Consensus       226 ~~~d~~~l~~~~~~------~~kai~l~nP~NPTG~vls~e~l~~I~~ia~~~~~~l~II~DEvY~~f~~---~~~sl~~  296 (521)
T TIGR03801       226 WQYPDKELEKLRDP------SIKALFVVNPSNPPSVAMSDESIEKIVDIVANDRPDLMILTDDVYGTFVD---DFRSLFA  296 (521)
T ss_pred             CCCCHHHHHHhcCC------CCcEEEEeCCCCCCCCCCCHHHHHHHHHHHHhcCCCeEEEECCCchhhcc---cccchhh
Confidence            68999999987643      5889999999999998877   77788889987  999999999985332   1111111


Q ss_pred             CCCCccEEEECCccccCCC-CceEEEEEecc
Q psy14299        151 GINRANSVSWNPHKMLGAP-LQCSILLIKEK  180 (448)
Q Consensus       151 ~~~~aD~~~~s~hK~l~~P-~g~G~l~vr~~  180 (448)
                      ....--+++.|..|.++.| .-+|+++..++
T Consensus       297 ~~~~~vI~v~SfSK~fg~~G~RlG~i~~~~~  327 (521)
T TIGR03801       297 ELPYNTIGVYSFSKYFGATGWRLGTIALHKD  327 (521)
T ss_pred             hCCCCEEEEEcchhhccCchhhhhhhhcCch
Confidence            1111125667889988654 34566655443

This enzyme, aspartate 4-decarboxylase (EC 4.1.1.12), removes the side-chain carboxylate from L-aspartate, converting it to L-alanine plus carbon dioxide. It is a PLP-dependent enzyme, homologous to aspartate aminotransferase (EC 2.6.1.1).

>PRK11522 putrescine--2-oxoglutarate aminotransferase; Provisional

Probab=99.49  E-value=2.7e-11  Score=126.18  Aligned_cols=295  Identities=12%  Similarity=0.094  Sum_probs=171.1

Q ss_pred             cEEEeCcHHHHHHHHHHHHHHhcCCcccccCCCCCCCeEEEecCCCchHHHHHHHHhCCCC---------CcEEEEecCC
Q psy14299          4 KPFLLPGGSISNMYSICLARYRLDPDTKRKGLSHLPPLCMFTSEDSHYSMLKAAHWLGIGM---------DNVIRVKTNE   74 (448)
Q Consensus         4 ~g~~t~ggT~an~~al~~a~~~~~~~~~~~G~~~~~~~~Vl~~~~~H~s~~~~~~~~g~~~---------~~v~~v~~~~   74 (448)
                      .++|+++||+||-.|+..||....    ..|    ...+|......|-...-+....+-..         ..+..+|.+ 
T Consensus       143 ~v~f~~SGsEAve~AlklAr~~t~----~~g----r~~ii~~~~~yHG~t~~~ls~~~~~~~~~~~~~~~~~~~~~~~~-  213 (459)
T PRK11522        143 YSFFCNSGTESVEAALKLAKAYQS----PRG----KFTFIATSGAFHGKSLGALSATAKSTFRKPFMPLLPGFRHVPFG-  213 (459)
T ss_pred             EEEEeCCchHHHHHHHHHHHHHhc----cCC----CcEEEEecCCCCCCcHHHhhhcCCcccccCCCCCCCCCcccCCC-
Confidence            478999999999999999987521    011    12334444455554443333333210         012223322 


Q ss_pred             CCCcCHHHHHHHHHHhhhcCCCcEEEEEeccCCccccccC----HHHHHHHHHHcCCEEEEecccccccccccchhhhhc
Q psy14299         75 RGQMICSFLEQTIQTSLAEKKIPLFVNATAGTTVLGAFDP----LDEIATVCEKYDLWMHVDACWGGSLIFSEKYSFVLK  150 (448)
Q Consensus        75 ~g~id~e~Le~~l~~~~~~~~~~~lVv~~~~~t~tG~~~~----l~~I~~ia~~~g~~l~VD~A~~~~~~~~~~~~~~~~  150 (448)
                          |.+++++.+++....+.++.+|++.......|.+.|    ++++.++|++||+.+++|+++.+.--...-+.....
T Consensus       214 ----d~~~l~~~l~~~~~~~~~iAavIvEpv~g~~G~~~pp~~yl~~lr~lc~~~g~llI~DEV~tG~GRtG~~~a~e~~  289 (459)
T PRK11522        214 ----NIEAMRTALSECKKTGDDVAAVILEPIQGEGGVILPPEGYLTAVRKLCDEFGALLILDEVQTGMGRTGKMFACEHE  289 (459)
T ss_pred             ----CHHHHHHHHHHhhccCCcEEEEEEecccCCCCCccCCHHHHHHHHHHHHHcCCEEEeccceecCCccchhhhhhcc
Confidence                788999988754333345667888888888898888    999999999999999999998642111111111112


Q ss_pred             CCCCccEEEECCccccCCC-CceEEEEEeccchhhhhccCCcccccccCcccccccCCCCCcccCCCCchhHHHHHHHHH
Q psy14299        151 GINRANSVSWNPHKMLGAP-LQCSILLIKEKGLLHQANATAATYLFQQDKFYDVSFDTGDKSVQCGRKVDAFKLWLMWKA  229 (448)
Q Consensus       151 ~~~~aD~~~~s~hK~l~~P-~g~G~l~vr~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  229 (448)
                      ++ ..|++++  .|.+++- ..+|.++.+++ +...... . ++.....              ..+.+   +        
T Consensus       290 gv-~PDivt~--gK~lggG~~Pigav~~~~~-i~~~~~~-~-~~~~~~T--------------~~gnp---~--------  338 (459)
T PRK11522        290 NV-QPDILCL--AKALGGGVMPIGATIATEE-VFSVLFD-N-PFLHTTT--------------FGGNP---L--------  338 (459)
T ss_pred             CC-CCCEEEe--chhhhCCCccceeEEEcHH-HHHHhcc-C-CcccCCC--------------CCCCH---H--------
Confidence            33 3687754  7988753 24777777654 3222111 1 1111100              00011   1        


Q ss_pred             hChHHHHHHHHHhhhhccCCCccchhhhhhhhhhhhhhhhhhhhhhhccccccccccCCCCCccccccchhhHHHHHHHH
Q psy14299        230 RGNLGFRHFVDNAVDCSRGSMTFSTLLCFDLQGLLHQANATAATYLFQQDKFYDVSFDTGDKSVQCGRKVDAFKLWLMWK  309 (448)
Q Consensus       230 ~g~~g~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  309 (448)
                                                                                            .......+++
T Consensus       339 ----------------------------------------------------------------------~~Aaala~L~  348 (459)
T PRK11522        339 ----------------------------------------------------------------------ACAAALATIN  348 (459)
T ss_pred             ----------------------------------------------------------------------HHHHHHHHHH
Confidence                                                                                  1111223344


Q ss_pred             HhcCccHHHHHHHHHHHHHHHHHHhhcCC-CeE-EeccC--CceeeEEEEeeccCCCccccchhhhhhhhhhhHHHHHHH
Q psy14299        310 ARGNLGFRHFVDNAVDCSRYFLSQISQRP-GFR-LVIPE--FQCTNICFWFIPVSLRDKVEDETWWSTLSKVAPRIKEKL  385 (448)
Q Consensus       310 ~~~~~G~~~~~~~~~~l~~~~~~~L~~~p-g~~-l~~~~--~~~~~v~f~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~L  385 (448)
                      .+.+++   +.++..++.+++++.|+++. .+. ++ .+  ....++.+.+.+.                .....+.+.|
T Consensus       349 ~i~~~~---l~~~~~~~g~~l~~~L~~l~~~~~~~i-~~VrG~Gl~~giel~~~----------------~~~~~i~~~l  408 (459)
T PRK11522        349 VLLEQN---LPAQAEQKGDYLLDGFRQLAREYPDLV-QEARGKGMLMAIEFVDN----------------EIGYNFASEM  408 (459)
T ss_pred             HHhcch---HHHHHHHHHHHHHHHHHHHHHhCCCce-eeEEeceeEEEEEecCc----------------hHHHHHHHHH
Confidence            444432   45667777888888877641 121 11 11  2234444443211                1234688899


Q ss_pred             HhCCcEEEEeeecCCcccccEEEEEecCCCCCCHHHHHHHHHHHHHHHHHhHHh
Q psy14299        386 VLGGTLMIGYQPLQHRNLHNFFRLVTTCHPASSRQDMDYAIDQIELRGAEVDLE  439 (448)
Q Consensus       386 ~~~g~~~~~~~~~~g~~~~~~lRis~~~~~~~t~edid~l~~al~~~~~~~~~~  439 (448)
                      .++| +++.+... +.   ..+|+.+  ...+|++|||+++++|+++.+++.+.
T Consensus       409 ~~~G-vl~~~~~~-~~---~~lr~~P--pl~~t~~~id~~l~~l~~~l~~~~~~  455 (459)
T PRK11522        409 FRQR-VLVAGTLN-NA---KTIRIEP--PLTLTIEQCEQVLKAARKALAAMRVS  455 (459)
T ss_pred             HHCC-eEEEecCC-CC---CEEEEEC--CccCCHHHHHHHHHHHHHHHHHHHHh
Confidence            9999 55544322 22   6899999  68999999999999999998876644

>PRK06434 cystathionine gamma-lyase; Validated

Probab=99.49  E-value=5.1e-12  Score=128.48  Aligned_cols=140  Identities=15%  Similarity=0.118  Sum_probs=99.0

Q ss_pred             cEEEeCcHHHHHHHHHHHHHHhcCCcccccCCCCCCCeEEEecCCCc----hHHHHHHHHhCCCCCcEEEEecCCCCCcC
Q psy14299          4 KPFLLPGGSISNMYSICLARYRLDPDTKRKGLSHLPPLCMFTSEDSH----YSMLKAAHWLGIGMDNVIRVKTNERGQMI   79 (448)
Q Consensus         4 ~g~~t~ggT~an~~al~~a~~~~~~~~~~~G~~~~~~~~Vl~~~~~H----~s~~~~~~~~g~~~~~v~~v~~~~~g~id   79 (448)
                      .++.+++||.|+.+++.+...              +++.|+++...+    ..+...+...|+   ++..++.++...++
T Consensus        81 ~av~~sSG~aAi~~al~all~--------------~GD~Vl~~~~~yg~t~~~~~~~~~~~Gi---~v~fvd~~~~~~~~  143 (384)
T PRK06434         81 HALSFSSGMGAITSAILSLIK--------------KGKRILSISDLYGQTFYFFNKVLKTLGI---HVDYIDTDRLNSLD  143 (384)
T ss_pred             cEEEeCCHHHHHHHHHHHHhC--------------CCCEEEEecCccchHHHHHHHHHHhcCc---EEEEECCCChhhee
Confidence            468899999998888766532              667788775422    222355556677   68788775322222


Q ss_pred             HHHHHHHHHHhhhcCCCcEEEEEeccCCccccccCHHHHHHHHHHcCCEEEEecccccccccccchhhhhcCCCCccEEE
Q psy14299         80 CSFLEQTIQTSLAEKKIPLFVNATAGTTVLGAFDPLDEIATVCEKYDLWMHVDACWGGSLIFSEKYSFVLKGINRANSVS  159 (448)
Q Consensus        80 ~e~Le~~l~~~~~~~~~~~lVv~~~~~t~tG~~~~l~~I~~ia~~~g~~l~VD~A~~~~~~~~~~~~~~~~~~~~aD~~~  159 (448)
                             +++     .++++|.+.+++|+++.+.|+++|+++||+++  ++||++++.....-+ .     + .++|+++
T Consensus       144 -------l~~-----~~tklv~~e~~snpt~~v~Di~~I~~la~~~~--lvVD~t~~s~~~~~p-l-----~-~gaDivv  202 (384)
T PRK06434        144 -------FDP-----SNYDLIYAESITNPTLKVPDIKNVSSFCHEND--VIVDATFASPYNQNP-L-----D-LGADVVI  202 (384)
T ss_pred             -------ecC-----CCeeEEEEEcCCCCCceeecHHHHHHHHHHcC--eEEECCCCCcccCCc-h-----h-cCCCEEE
Confidence                   221     25789999999999999999999999999998  567999875543111 1     1 1589999


Q ss_pred             ECCccccCCCCc--eEEEEEeccc
Q psy14299        160 WNPHKMLGAPLQ--CSILLIKEKG  181 (448)
Q Consensus       160 ~s~hK~l~~P~g--~G~l~vr~~~  181 (448)
                      +|.||++++|.+  .|++..++++
T Consensus       203 ~S~tK~i~G~~d~~gG~vv~~~~~  226 (384)
T PRK06434        203 HSATKYISGHSDVVMGVAGTNNKS  226 (384)
T ss_pred             eecccccCCCCCceEEEEecCcHH
Confidence            999999999886  5555555543

>PRK05093 argD bifunctional N-succinyldiaminopimelate-aminotransferase/acetylornithine transaminase protein; Reviewed

Probab=99.49  E-value=4.9e-11  Score=122.56  Aligned_cols=156  Identities=17%  Similarity=0.178  Sum_probs=97.5

Q ss_pred             cEEEeCcHHHHHHHHHHHHHHhcCCcccccCCCCCCCeEEEecCCCchHHHHHHHHhC-------CC--CCcEEEEecCC
Q psy14299          4 KPFLLPGGSISNMYSICLARYRLDPDTKRKGLSHLPPLCMFTSEDSHYSMLKAAHWLG-------IG--MDNVIRVKTNE   74 (448)
Q Consensus         4 ~g~~t~ggT~an~~al~~a~~~~~~~~~~~G~~~~~~~~Vl~~~~~H~s~~~~~~~~g-------~~--~~~v~~v~~~~   74 (448)
                      ..+|+++|++||..|+..+|.....   ..+ . .++.+|.++...|-+...+....+       ..  ...+..+|.+ 
T Consensus        99 ~~~~~~sGseA~e~a~klar~~~~~---~~~-~-~~~~ii~~~~~~HG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-  172 (403)
T PRK05093         99 RVFFANSGAEANEAAFKLARRYACD---RHG-P-EKTEIIAFHNSFHGRTLFTVSVGGQPKYSDGFGPKPADITHVPFN-  172 (403)
T ss_pred             EEEEeCchHHHHHHHHHHHHHHHhh---cCC-C-CCCeEEEEcCCcCCchhhhHhhcCChhhhhcCCCCCCCcEEeCCC-
Confidence            4789999999999999988765210   001 0 244567777888887665444322       11  1124444444 


Q ss_pred             CCCcCHHHHHHHHHHhhhcCCCcEEEEEeccCCccccccC----HHHHHHHHHHcCCEEEEecccccccccccch-hhhh
Q psy14299         75 RGQMICSFLEQTIQTSLAEKKIPLFVNATAGTTVLGAFDP----LDEIATVCEKYDLWMHVDACWGGSLIFSEKY-SFVL  149 (448)
Q Consensus        75 ~g~id~e~Le~~l~~~~~~~~~~~lVv~~~~~t~tG~~~~----l~~I~~ia~~~g~~l~VD~A~~~~~~~~~~~-~~~~  149 (448)
                          |++++++.+.+      ++++|++.-...+.|.+.|    +++|.++|++||+++++|.+|++. ...... ....
T Consensus       173 ----d~~~l~~~l~~------~~aaiiiep~~~~gg~~~~~~~~l~~l~~l~~~~g~~lI~DEv~~g~-g~~g~~~~~~~  241 (403)
T PRK05093        173 ----DLAAVKAVIDD------HTCAVVVEPIQGEGGVIPATPEFLQGLRELCDQHNALLIFDEVQTGM-GRTGDLFAYMH  241 (403)
T ss_pred             ----CHHHHHHHhcC------CeEEEEEecccCCCCCccCCHHHHHHHHHHHHHcCCEEEEechhhCC-CCCccchhhhh
Confidence                88999988853      4777888754444454433    999999999999999999998842 221111 1111


Q ss_pred             cCCCCccEEEECCccccCCCCceEEEEEec
Q psy14299        150 KGINRANSVSWNPHKMLGAPLQCSILLIKE  179 (448)
Q Consensus       150 ~~~~~aD~~~~s~hK~l~~P~g~G~l~vr~  179 (448)
                      .++ ..|..  +..|.+++-..+|.++.++
T Consensus       242 ~~~-~pdi~--s~sK~l~~G~rig~vv~~~  268 (403)
T PRK05093        242 YGV-TPDIL--TSAKALGGGFPIGAMLTTA  268 (403)
T ss_pred             cCC-CCCEE--EecccccCCcceEEEEEcH
Confidence            122 24654  4579887433477777654

>PRK04260 acetylornithine aminotransferase; Provisional

Probab=99.48  E-value=2e-11  Score=124.16  Aligned_cols=153  Identities=16%  Similarity=0.102  Sum_probs=100.4

Q ss_pred             EEEeCcHHHHHHHHHHHHHHhcCCcccccCCCCCCCeEEEecCCCchHHHHHHHHhCCCCC------cEEEEecCCCCCc
Q psy14299          5 PFLLPGGSISNMYSICLARYRLDPDTKRKGLSHLPPLCMFTSEDSHYSMLKAAHWLGIGMD------NVIRVKTNERGQM   78 (448)
Q Consensus         5 g~~t~ggT~an~~al~~a~~~~~~~~~~~G~~~~~~~~Vl~~~~~H~s~~~~~~~~g~~~~------~v~~v~~~~~g~i   78 (448)
                      ++|+++||++|..|+..++...           ..+.+|..+...|-+...++...+....      .+..++..  -..
T Consensus        87 ~~~~~SGseA~~~Al~~ar~~~-----------~~~~vv~~~~~yHg~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~  153 (375)
T PRK04260         87 AFFCNSGAEANEAAIKIARKAT-----------GKQEIITFQNSFHGRTFGSMSATGQDKIKDGFGDGVPHFSYA--IFN  153 (375)
T ss_pred             EEEcCccHHHHHHHHHHHHHhc-----------CCCeEEEECCCcCcccHHHHhccCCcccCCCCCCCCCCeEEe--CCC
Confidence            5899999999999999987641           1334566677889888777665443110      00001100  023


Q ss_pred             CHHHHHHHHHHhhhcCCCcEEEEEeccCCccccccC----HHHHHHHHHHcCCEEEEeccccccccccc-chhhhhcCCC
Q psy14299         79 ICSFLEQTIQTSLAEKKIPLFVNATAGTTVLGAFDP----LDEIATVCEKYDLWMHVDACWGGSLIFSE-KYSFVLKGIN  153 (448)
Q Consensus        79 d~e~Le~~l~~~~~~~~~~~lVv~~~~~t~tG~~~~----l~~I~~ia~~~g~~l~VD~A~~~~~~~~~-~~~~~~~~~~  153 (448)
                      |++++++.+.+      ++.+|++..+.+++|.+.|    +++|.++|+++|+++++|++|.+ ..... .+.....++ 
T Consensus       154 dl~~l~~~l~~------~~a~vi~e~v~~~~G~~~~~~~~l~~~~~l~~~~~~~~i~De~~~g-~g~~g~~~~~~~~~~-  225 (375)
T PRK04260        154 DLNSVKALVNK------NTAAVMLELVQGESGVLPADKDFVKALADYCQETGILLIVDEVQTG-MGRTGKLYAFEHYGI-  225 (375)
T ss_pred             CHHHHHHhcCC------CeEEEEECCeECCCCCcCCCHHHHHHHHHHHHHcCCEEEEechhhC-CCcccchhhhHhhCC-
Confidence            88999988743      3678888888888898765    89999999999999999999864 22111 111111233 


Q ss_pred             CccEEEECCccccCCCCceEEEEEecc
Q psy14299        154 RANSVSWNPHKMLGAPLQCSILLIKEK  180 (448)
Q Consensus       154 ~aD~~~~s~hK~l~~P~g~G~l~vr~~  180 (448)
                      ..|.+  +..|.++.-...|.++.+++
T Consensus       226 ~pdi~--t~sK~l~~G~~ig~~~~~~~  250 (375)
T PRK04260        226 EPDIF--TLAKGLANGVPVGAMLAKSS  250 (375)
T ss_pred             CCCEE--EecccccCCcceEEEEEcHH
Confidence            24644  57998874345788777553

>PLN02672 methionine S-methyltransferase

Probab=99.48  E-value=1.5e-11  Score=136.98  Aligned_cols=115  Identities=18%  Similarity=0.166  Sum_probs=90.4

Q ss_pred             cEEEeCcHHHHHHHHHHHHHHhcCCcccccCCCCCCCeEEEecCCCchHHHHHHHHhCCCCCcEEEEecCC--CCCcCHH
Q psy14299          4 KPFLLPGGSISNMYSICLARYRLDPDTKRKGLSHLPPLCMFTSEDSHYSMLKAAHWLGIGMDNVIRVKTNE--RGQMICS   81 (448)
Q Consensus         4 ~g~~t~ggT~an~~al~~a~~~~~~~~~~~G~~~~~~~~Vl~~~~~H~s~~~~~~~~g~~~~~v~~v~~~~--~g~id~e   81 (448)
                      ..++|+|+++++..++.+..+              +++.|+++...+..+...++..|.   +++.+|.++  +..+|++
T Consensus       756 ~IIvt~Gs~elL~lll~aLl~--------------pGD~VLVp~PtY~~Y~~~a~~~Ga---~vv~Vpl~~e~gf~lD~d  818 (1082)
T PLN02672        756 EFVYGDTSLALFNKLVLCCVQ--------------EGGTLCFPAGSNGTYVSAAKFLKA---NFRRIPTKSSDGFKLTAK  818 (1082)
T ss_pred             EEEEeCCHHHHHHHHHHHHcC--------------CCCEEEEeCCChHHHHHHHHHcCC---EEEEEecccccCCCCCHH
Confidence            366777776666566555444              677899999999999999999998   789999864  4688999


Q ss_pred             HHHHHHHHhhhcCCCcEEEEEeccC-CccccccC---HHHHHHHHHHcCCEEEEecccccccc
Q psy14299         82 FLEQTIQTSLAEKKIPLFVNATAGT-TVLGAFDP---LDEIATVCEKYDLWMHVDACWGGSLI  140 (448)
Q Consensus        82 ~Le~~l~~~~~~~~~~~lVv~~~~~-t~tG~~~~---l~~I~~ia~~~g~~l~VD~A~~~~~~  140 (448)
                      .|++++++.     +.+.|+++.++ |+||.+.+   +++|.++|++||+++++|.+|+...+
T Consensus       819 ~Le~al~~~-----~~~~I~L~nPnhNPTG~v~S~eeLe~Llela~k~di~VIsDEaYsdL~F  876 (1082)
T PLN02672        819 TLASTLETV-----KKPWVYISGPTINPTGLLYSNSEIEEILSVCAKYGARVIIDTSFSGLEY  876 (1082)
T ss_pred             HHHHHhccC-----CCCEEEEECcCCCCcCccCCHHHHHHHHHHHHHcCCEEEEeCCCCcccc
Confidence            999998541     23478888887 99998755   77788899999999999999974443

>PRK13237 tyrosine phenol-lyase; Provisional

Probab=99.48  E-value=2.1e-11  Score=124.58  Aligned_cols=162  Identities=12%  Similarity=0.121  Sum_probs=108.3

Q ss_pred             cEEEeCcHHHHHHHHHHHHHHhcCCcccccCCCCCCCeEEEecCCCchHHHHH-HHHhCCCCCcEEEEe----------c
Q psy14299          4 KPFLLPGGSISNMYSICLARYRLDPDTKRKGLSHLPPLCMFTSEDSHYSMLKA-AHWLGIGMDNVIRVK----------T   72 (448)
Q Consensus         4 ~g~~t~ggT~an~~al~~a~~~~~~~~~~~G~~~~~~~~Vl~~~~~H~s~~~~-~~~~g~~~~~v~~v~----------~   72 (448)
                      .+++|++||+|+.++.....              .++++|  +...|..-..+ ....|.   .+.-+.          .
T Consensus        95 ~aV~v~sGTaAl~ll~~l~v--------------~pGd~V--p~n~~f~Tt~ahI~~~Ga---~fvDi~~d~a~~~~~~~  155 (460)
T PRK13237         95 HVVPTHQGRGAENLLSRIAI--------------KPGQYV--PGNMYFTTTRYHQELNGG---IFVDIIIDEAHDAQSDH  155 (460)
T ss_pred             eEEEeCCHHHHHHHHHHhCC--------------CCcCEE--CCccchHhhHHHHHhCCc---EEEeeecccccccccCC
Confidence            36899999999887533221              155544  77888877766 455555   343332          1


Q ss_pred             CCCCCcCHHHHHHHHHHhhhcCCCcEEEEEeccCCcc-cc---ccCHHHHHHHHHHcCCEEEEecccccccc-cccc---
Q psy14299         73 NERGQMICSFLEQTIQTSLAEKKIPLFVNATAGTTVL-GA---FDPLDEIATVCEKYDLWMHVDACWGGSLI-FSEK---  144 (448)
Q Consensus        73 ~~~g~id~e~Le~~l~~~~~~~~~~~lVv~~~~~t~t-G~---~~~l~~I~~ia~~~g~~l~VD~A~~~~~~-~~~~---  144 (448)
                      +.+|.+|+++|+++|++..  ..++.+|.++...+.. |.   ..++++|.++|++||+++|.|+|+..+.. ++..   
T Consensus       156 p~tgnlD~d~Le~~I~~~~--~~~~~lV~a~itvn~~GGqpvs~~~m~~I~elA~~~Gl~Vi~DaAra~gna~fI~~re~  233 (460)
T PRK13237        156 PFKGNVDLDKLQALIDEVG--AENIAYICLAVTVNLAGGQPVSMANMRAVRELCDKHGIKVFFDATRCVENAYFIKEREE  233 (460)
T ss_pred             CCCCCcCHHHHHHHhcccc--CCccCceEEEEecccCCCeeCCHHhHHHHHHHHHHcCCEEEEECcchhcChhhhccccc
Confidence            2468999999999997521  1234455555555666 43   35799999999999999999999987733 2211   


Q ss_pred             -hhh-hh----c-CCCCccEEEECCccccCCCCceEEEEEeccchhhhhc
Q psy14299        145 -YSF-VL----K-GINRANSVSWNPHKMLGAPLQCSILLIKEKGLLHQAN  187 (448)
Q Consensus       145 -~~~-~~----~-~~~~aD~~~~s~hK~l~~P~g~G~l~vr~~~~~~~~~  187 (448)
                       +.. .+    . -.+.+|.+++|+||.+.+|. .|++..+++++.....
T Consensus       234 ~y~~~~i~ei~~e~~s~aD~~t~S~~K~~~~~~-GG~i~t~D~eL~~~~r  282 (460)
T PRK13237        234 GYQDKSIKEIVHEMFSYADGCTMSGKKDCLVNI-GGFLAMNDEELFDEAK  282 (460)
T ss_pred             ccCCCcHhHHhhhccCcCcEEEEeCCCCCCCCC-ceEEEECCHHHHHHHH
Confidence             111 00    0 01358999999999999987 5667787877655543

>KOG1357|consensus

Probab=99.47  E-value=1.2e-12  Score=129.68  Aligned_cols=273  Identities=15%  Similarity=0.148  Sum_probs=176.9

Q ss_pred             CCeEEEecCCCchHHHHHHHHhCCCCCcEEEEecCCCCCcCHHHHHHHHHHhhhcCC------CcE-EEEEeccCCcccc
Q psy14299         39 PPLCMFTSEDSHYSMLKAAHWLGIGMDNVIRVKTNERGQMICSFLEQTIQTSLAEKK------IPL-FVNATAGTTVLGA  111 (448)
Q Consensus        39 ~~~~Vl~~~~~H~s~~~~~~~~g~~~~~v~~v~~~~~g~id~e~Le~~l~~~~~~~~------~~~-lVv~~~~~t~tG~  111 (448)
                      |+-.|+.++..|.|+...|++.|.   .++...++     |+++||+.|++..-++.      .-+ +|++....++-|.
T Consensus       220 ~gsLIiSDelNHaSi~~GaRLSgA---tiRVfkHN-----dm~~LEr~Lrd~I~~gqP~Thrp~kki~iivegiysmEg~  291 (519)
T KOG1357|consen  220 KGSLIISDELNHASLITGARLSGA---TTRVFRHN-----DMQGLERLLRDAIVYGQPKTHRPWKKILICVEGIYSMEGT  291 (519)
T ss_pred             CCcceeeccccchheeccccccCc---eEEEEecC-----CHHHHHHHHHHHHhcCCCCcCCcchheeeeeccceeccCe
Confidence            566788899999999999999999   78889998     99999999987554432      113 4555556668999


Q ss_pred             ccCHHHHHHHHHHcCCEEEEecccccccccccchhh-hhcC--CCCccEEEECCccccCCCCceEEEEEeccchhhhhcc
Q psy14299        112 FDPLDEIATVCEKYDLWMHVDACWGGSLIFSEKYSF-VLKG--INRANSVSWNPHKMLGAPLQCSILLIKEKGLLHQANA  188 (448)
Q Consensus       112 ~~~l~~I~~ia~~~g~~l~VD~A~~~~~~~~~~~~~-~~~~--~~~aD~~~~s~hK~l~~P~g~G~l~vr~~~~~~~~~~  188 (448)
                      +.+++++.+++|+|.+++++|+||+.|++....... .+.+  -..+|++...+.|.+++   +|.....++.+......
T Consensus       292 iv~Lp~vvalkkkykayl~lDEAHSiGA~g~tGrgvce~~g~d~~dvDImMGtftKSfga---~GGyiagsk~lid~lrt  368 (519)
T KOG1357|consen  292 IVDLPEVVALKKKYKAYLYLDEAHSIGAMGATGRGVCEYFGVDPEDVDIMMGTFTKSFGA---AGGYIAGSKELIDYLRT  368 (519)
T ss_pred             ecccHHHHHhhccccEEEEeeccccccccCCCCcceeeccCCCchhheeecceehhhccc---ccceecCcHHHHhhhcc
Confidence            999999999999999999999999999873211000 0001  12489999999999884   45544445544433322


Q ss_pred             CCcccccccCcccccccCCCCCcccCCCCchhHHHHHHHHHhChHHHHHHHHHhhhhccCCCccchhhhhhhhhhhhhhh
Q psy14299        189 TAATYLFQQDKFYDVSFDTGDKSVQCGRKVDAFKLWLMWKARGNLGFRHFVDNAVDCSRGSMTFSTLLCFDLQGLLHQAN  268 (448)
Q Consensus       189 ~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~g~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  268 (448)
                      ..+.-.....               .+.+...-.+....-..|                                     
T Consensus       369 ~s~~~~yat~---------------~sppvaqq~~ssl~~i~G-------------------------------------  396 (519)
T KOG1357|consen  369 PSPSALYATS---------------LSPPVAQQILTSVKHIMG-------------------------------------  396 (519)
T ss_pred             CCCceeeccc---------------CChHHHHHHHHHHHhhcC-------------------------------------
Confidence            1111111100               011100000000000001                                     


Q ss_pred             hhhhhhhhccccccccccCCCCCccccccchhhHHHHHHHHHhcCccHHHHHHHHHHHHHHHHHHhhcCCCeEEeccCCc
Q psy14299        269 ATAATYLFQQDKFYDVSFDTGDKSVQCGRKVDAFKLWLMWKARGNLGFRHFVDNAVDCSRYFLSQISQRPGFRLVIPEFQ  348 (448)
Q Consensus       269 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~~l~~~~~~~L~~~pg~~l~~~~~~  348 (448)
                                                               .-+..+-++..++..++++||+..++.. ||-++ +...
T Consensus       397 -----------------------------------------~dgt~~g~~k~~~l~~ns~yfr~~l~~~-gfivy-G~~d  433 (519)
T KOG1357|consen  397 -----------------------------------------EDGTNRGRQKIERLAENSRYFRWELQKM-GFIVY-GNND  433 (519)
T ss_pred             -----------------------------------------CCcccHHHHHHHHHHhhhHHHHHhhhcC-cEEEe-cCCC
Confidence                                                     1122334566777888899999999998 99988 7777


Q ss_pred             eeeEEEEeeccCCCccccchhhhhhhhhhhHHHHHHHHhCCcEEEEeeecCCcccccEEEEEecCCCCCCHHHHHHHHHH
Q psy14299        349 CTNICFWFIPVSLRDKVEDETWWSTLSKVAPRIKEKLVLGGTLMIGYQPLQHRNLHNFFRLVTTCHPASSRQDMDYAIDQ  428 (448)
Q Consensus       349 ~~~v~f~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~L~~~g~~~~~~~~~~g~~~~~~lRis~~~~~~~t~edid~l~~a  428 (448)
                      ++++.+.+.++...                ..+.+.|+++.+.++..+.+-..-.....|++.  +..+++|++|++++.
T Consensus       434 SpVvplll~~~~k~----------------~~f~r~~l~~nigvVvvgfPatpl~e~r~R~c~--Sa~ht~e~ld~~l~~  495 (519)
T KOG1357|consen  434 SPVVPLLLYGPAKI----------------VAFSREMLERNIGVVVVGFPATPLLESRARFCL--SASHTKEDLDRALEV  495 (519)
T ss_pred             CCcceeeecCcccc----------------cHHHHHHHhcCceEEEEeCCCchHHHhHHHhhh--cccccHHHHHHHHHH
Confidence            77777665543221                267778888765444332221111125789999  679999999999999


Q ss_pred             HHHHHHH
Q psy14299        429 IELRGAE  435 (448)
Q Consensus       429 l~~~~~~  435 (448)
                      +.++...
T Consensus       496 i~~~g~~  502 (519)
T KOG1357|consen  496 IDRVGDE  502 (519)
T ss_pred             Hhhhchh
Confidence            9988754

>PRK07590 L,L-diaminopimelate aminotransferase; Validated

Probab=99.47  E-value=1.3e-11  Score=127.21  Aligned_cols=149  Identities=9%  Similarity=0.036  Sum_probs=97.0

Q ss_pred             cEEEeCcHHHHHHHHHHHHHHhcCCcccccCCCCCCCeEEEecCCCchHHHHHHHHhCCCCC--------cEEEEecCCC
Q psy14299          4 KPFLLPGGSISNMYSICLARYRLDPDTKRKGLSHLPPLCMFTSEDSHYSMLKAAHWLGIGMD--------NVIRVKTNER   75 (448)
Q Consensus         4 ~g~~t~ggT~an~~al~~a~~~~~~~~~~~G~~~~~~~~Vl~~~~~H~s~~~~~~~~g~~~~--------~v~~v~~~~~   75 (448)
                      ..++|+|+++++.+. ..+..              +++.|++...++..+...++..|....        +++.+|.+++
T Consensus       101 ~I~it~Ga~~al~~l-~~~~~--------------~gd~V~v~~P~Y~~~~~~~~~~g~~~~~~~~~~~~~~~~v~~~~~  165 (409)
T PRK07590        101 EIFISDGAKCDTGNI-LDIFG--------------PDNTIAVTDPVYPVYVDTNVMAGRTGEANEDGRYSGIVYLPCTAE  165 (409)
T ss_pred             hEEECCCHHHHHHHH-HHhcC--------------CCCEEEEeCCCCcchHHHHHHcCCcccccccccccceeEeecccc
Confidence            367888888886553 22222              667788999999999999999887210        1778887644


Q ss_pred             CCcCHHHHHHHHHHhhhcCCCcEEEEEeccCCccccccC---HHHHHHHHHHcCCEEEEecccccccccccchhhhhcCC
Q psy14299         76 GQMICSFLEQTIQTSLAEKKIPLFVNATAGTTVLGAFDP---LDEIATVCEKYDLWMHVDACWGGSLIFSEKYSFVLKGI  152 (448)
Q Consensus        76 g~id~e~Le~~l~~~~~~~~~~~lVv~~~~~t~tG~~~~---l~~I~~ia~~~g~~l~VD~A~~~~~~~~~~~~~~~~~~  152 (448)
                      +.+.++ ++    +     .++++|+++.++|+||.+.+   +++|.++|++||+++++|.+|+-....... ...+..+
T Consensus       166 ~~~~~d-~~----~-----~~~k~i~l~nP~NPTG~~~s~~~~~~l~~~a~~~~~~iI~De~Y~~~~~~~~~-~~~~~~~  234 (409)
T PRK07590        166 NNFVPE-LP----E-----EKVDIIYLCFPNNPTGTVLTKEQLKAWVDYAKENGSLILFDAAYEAFISDPSL-PHSIYEI  234 (409)
T ss_pred             cCCccc-Cc----c-----cCceEEEEeCCCCCcCCcCCHHHHHHHHHHHHHcCeEEEEEccchhhccCCCC-CcchhhC
Confidence            333222 11    1     25789988999999998866   567888899999999999998854321110 0111111


Q ss_pred             CC---ccEEEECCccccCCC-CceEEEEEe
Q psy14299        153 NR---ANSVSWNPHKMLGAP-LQCSILLIK  178 (448)
Q Consensus       153 ~~---aD~~~~s~hK~l~~P-~g~G~l~vr  178 (448)
                      ..   .-+++.|+.|.++.| .-+|+++..
T Consensus       235 ~~~~~~vi~~~SfSK~~~~pGlRiG~~i~~  264 (409)
T PRK07590        235 EGARECAIEFRSFSKTAGFTGTRCAYTVVP  264 (409)
T ss_pred             CCcccceEEEecCccccCCcCceeEEEEcC
Confidence            11   114466899998755 346666653

>PRK03967 histidinol-phosphate aminotransferase; Provisional

Probab=99.46  E-value=3e-11  Score=121.22  Aligned_cols=145  Identities=14%  Similarity=0.030  Sum_probs=105.1

Q ss_pred             cEEEeCcHHHHHHHHHHHHHHhcCCcccccCCCCCCCeEEEecCCCchHHHHHHHHhCCCCCcEEEEecCCCCCcCHHHH
Q psy14299          4 KPFLLPGGSISNMYSICLARYRLDPDTKRKGLSHLPPLCMFTSEDSHYSMLKAAHWLGIGMDNVIRVKTNERGQMICSFL   83 (448)
Q Consensus         4 ~g~~t~ggT~an~~al~~a~~~~~~~~~~~G~~~~~~~~Vl~~~~~H~s~~~~~~~~g~~~~~v~~v~~~~~g~id~e~L   83 (448)
                      ..++|+|+++++...+...                +++.|+++...|..+...++..|.   +++.++.++++.+|++.+
T Consensus        74 ~I~~t~G~~~~l~~~~~~~----------------~gd~V~v~~P~y~~~~~~~~~~g~---~~~~v~~~~~~~~d~~~l  134 (337)
T PRK03967         74 NIAVGNGSDELISYLVKLF----------------EGKHIVITPPTFGMYSFYAKLNGI---PVIDVPLKEDFTIDGERI  134 (337)
T ss_pred             eEEEcCCHHHHHHHHHHHh----------------CCCeEEEeCCChHHHHHHHHHcCC---eEEEeecCCCCCcCHHHH
Confidence            4678999999875544321                245688888888888888888888   788999887788999999


Q ss_pred             HHHHHHhhhcCCCcEEEEEeccCCccccccCHHHHHHHHHHcCCEEEEecccccccccccchhhhhcCCCCccEEEECCc
Q psy14299         84 EQTIQTSLAEKKIPLFVNATAGTTVLGAFDPLDEIATVCEKYDLWMHVDACWGGSLIFSEKYSFVLKGINRANSVSWNPH  163 (448)
Q Consensus        84 e~~l~~~~~~~~~~~lVv~~~~~t~tG~~~~l~~I~~ia~~~g~~l~VD~A~~~~~~~~~~~~~~~~~~~~aD~~~~s~h  163 (448)
                      ++.+.       +++++++++++|+||.+.+.++|.++++ +++++++|++|.-...  ........... --+++.|+.
T Consensus       135 ~~~~~-------~~~~v~~~~P~NPtG~~~~~~~l~~i~~-~~~~ii~De~y~~~~~--~~~~~~~~~~~-~vi~l~S~S  203 (337)
T PRK03967        135 AEKAK-------NASAVFICSPNNPTGNLQPEEEILKVLE-TGKPVVLDEAYAEFSG--KSLIGLIDEYP-NLILLRTFS  203 (337)
T ss_pred             HHhcc-------CCCEEEEeCCCCCCCCCCCHHHHHHHHh-cCCEEEEECchhhhcc--cchHHHHhhCC-CEEEEecch
Confidence            87642       3568888999999999999999999995 7999999999874321  11111111111 125567899


Q ss_pred             cccCCC-CceEEEEEe
Q psy14299        164 KMLGAP-LQCSILLIK  178 (448)
Q Consensus       164 K~l~~P-~g~G~l~vr  178 (448)
                      |.++.| .-+|+++..
T Consensus       204 K~~~l~GlRiG~iv~~  219 (337)
T PRK03967        204 KAFGLAGIRAGYAIAN  219 (337)
T ss_pred             HhhcchhhhheeeecC
Confidence            998755 456776663

>KOG0630|consensus

Probab=99.45  E-value=1.9e-12  Score=128.92  Aligned_cols=374  Identities=18%  Similarity=0.227  Sum_probs=227.7

Q ss_pred             CCeEEEecCCCchHH-HHHHHHhCCCCCcEEEEe-cCC---CCCcCHHHHHHHHHHhhhcCCCcEEEEEeccCCcccccc
Q psy14299         39 PPLCMFTSEDSHYSM-LKAAHWLGIGMDNVIRVK-TNE---RGQMICSFLEQTIQTSLAEKKIPLFVNATAGTTVLGAFD  113 (448)
Q Consensus        39 ~~~~Vl~~~~~H~s~-~~~~~~~g~~~~~v~~v~-~~~---~g~id~e~Le~~l~~~~~~~~~~~lVv~~~~~t~tG~~~  113 (448)
                      ....+|+++..|... ..+|+.+|+.-..+..++ ++.   .|+||.-.+++.|+++...+++|.+++..-+.+..|..+
T Consensus       230 aaPt~YiS~alh~~l~hYaarefGIa~~aI~~~~dhdqgeiegriDhh~feKiideDlaagkkPLilia~iGasi~GqnD  309 (838)
T KOG0630|consen  230 AAPTFYISEALHMDLLHYAAREFGIADEAIKPILDHDQGEIEGRIDHHLFEKIIDEDLAAGKKPLILIADIGASICGQND  309 (838)
T ss_pred             cCceEEEcccccHHHHHHHHHHhCCchhheecccccccccccccccHHHHHHHHHHHHhCCCCCeEEEEeccchhhcchH
Confidence            345799999999875 467888998543333333 222   359999999999999999999999999999999999999


Q ss_pred             CHHHHHHHHHHcC-CEEEEecccccccccccc-hhhhhcCCCCccEEEECCccccCCCCceEEEEEeccchhhhhccCCc
Q psy14299        114 PLDEIATVCEKYD-LWMHVDACWGGSLIFSEK-YSFVLKGINRANSVSWNPHKMLGAPLQCSILLIKEKGLLHQANATAA  191 (448)
Q Consensus       114 ~l~~I~~ia~~~g-~~l~VD~A~~~~~~~~~~-~~~~~~~~~~aD~~~~s~hK~l~~P~g~G~l~vr~~~~~~~~~~~~~  191 (448)
                      .|-+|.++|++|. .|+|.-| |+..++.+.+ ......-.+..|+++++..-|||.|...-+++-|.-+  ..    ..
T Consensus       310 mi~kildi~eahakfWLHasG-haiAALt~aepnnil~HV~eqldSMal~ialWLGiPSaPiV~LHRPle--g~----aa  382 (838)
T KOG0630|consen  310 MILKILDICEAHAKFWLHASG-HAIAALTCAEPNNILGHVEEQLDSMALNIALWLGIPSAPIVLLHRPLE--GS----AA  382 (838)
T ss_pred             HHHHHHHHHHHhhheeEeecc-chhhheeecCcccchhHHHHHHhhccchhHHHhCCCCCceEEeecccc--cc----cc
Confidence            9999999999997 9999987 3333332221 1111111234799999999999999876666554321  10    01


Q ss_pred             ccccccCcccccccCCCCCcccCCCCchhHHHHHHHHHhChHHHHHHHHHhhhhccCCCccch-----------------
Q psy14299        192 TYLFQQDKFYDVSFDTGDKSVQCGRKVDAFKLWLMWKARGNLGFRHFVDNAVDCSRGSMTFST-----------------  254 (448)
Q Consensus       192 ~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~g~~~~i~~~~~~~~~~~~~~~-----------------  254 (448)
                      +-+.              ......++..++++|.+++++|.+.+..+|+..+.+|+-.-...+                 
T Consensus       383 Safe--------------sdpi~rekLdaLp~Wta~q~LggKaIadmienAFll~kilfe~aSa~~eiemig~dn~aela  448 (838)
T KOG0630|consen  383 SAFE--------------SDPILREKLDALPLWTALQALGGKAIADMIENAFLLCKILFEGASACEEIEMIGHDNGAELA  448 (838)
T ss_pred             hhcc--------------cChHHHHhhccchHHHHHHHhcccHHHHHHHHHHHHHHHHHHHhhcCCceeEeccCCHHHHH
Confidence            1010              012345678899999999999999999999988876543211100                 


Q ss_pred             -h------hhhhhhhhhhhhhhhhhhhhhc----------------------------------cccccccccCCCCCcc
Q psy14299        255 -L------LCFDLQGLLHQANATAATYLFQ----------------------------------QDKFYDVSFDTGDKSV  293 (448)
Q Consensus       255 -~------~~~~~~~~~~~~~~~~~~~~~~----------------------------------~~~~~~~~~~~~~~~~  293 (448)
                       .      .-||.|-+.++|.-+-+ |-|.                                  .-.|.|..+.|.+..+
T Consensus       449 arl~dn~~sPfdvqalfdaaaPtVa-i~~~~~tsIk~a~q~hkaaaaaaddedA~aiaeke~~deaeY~D~LNaWL~d~L  527 (838)
T KOG0630|consen  449 ARLSDNIFSPFDVQALFDAAAPTVA-IFFDGSTSIKLAGQGHKAAAAAADDEDAEAIAEKEKIDEAEYFDRLNAWLGDGL  527 (838)
T ss_pred             HHHhhccCCcchHhhhhcccCCeEE-EEecCceeeeccccccHHHHhhccccchhhcchhhhcchHHHHHHHHHHHhccc
Confidence             0      22444555444433322 1111                                  1144566666666555


Q ss_pred             --cccc-chhhHHHH----HHHHHhcCcc-----------HHHHHHHHHHHHHHHHHHhh----------cCCCeEEecc
Q psy14299        294 --QCGR-KVDAFKLW----LMWKARGNLG-----------FRHFVDNAVDCSRYFLSQIS----------QRPGFRLVIP  345 (448)
Q Consensus       294 --~~~~-~~~~~~~~----~~~~~~~~~G-----------~~~~~~~~~~l~~~~~~~L~----------~~pg~~l~~~  345 (448)
                        .|.+ ..+.+...    .+++++..+-           ++..........+.++..+.          ..|-++++.-
T Consensus       528 lpd~~~f~fdtIE~~gn~GiafRfCPLEhgaae~pphidhlerFaqkLea~m~IleaTi~hKakF~eLkd~~~sL~LlPi  607 (838)
T KOG0630|consen  528 LPDCLNFDFDTIEHGGNHGIAFRFCPLEHGAAEQPPHIDHLERFAQKLEAHMDILEATIKHKAKFIELKDCFDSLRLLPI  607 (838)
T ss_pred             ccCCCCCCceeeecCCccceeEEecccccccccCCCchHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhcccceEEeec
Confidence              3444 22222221    3444443222           23333333333333332222          2234555522


Q ss_pred             CCceeeEEEEeeccCCCcc---ccchhhhhhhhhhhHHHHHHHHhCCcEEEEeee-cCCcccccEEEEEecCCCCCCHHH
Q psy14299        346 EFQCTNICFWFIPVSLRDK---VEDETWWSTLSKVAPRIKEKLVLGGTLMIGYQP-LQHRNLHNFFRLVTTCHPASSRQD  421 (448)
Q Consensus       346 ~~~~~~v~f~~~~~~~~~~---~~~~~~~~~~~~~~~~i~~~L~~~g~~~~~~~~-~~g~~~~~~lRis~~~~~~~t~ed  421 (448)
                      +...++..+++.|.-++..   ...+....++++++.++++.|......|..+.. ..|.   -|+||++.    +.+.|
T Consensus       608 ~eWAGiGaV~fiPsivkE~~~e~~nDiaKqeinhLNidLVeaLKStDaAFS~Gd~Tr~Gl---~CVkFGMl----sd~kd  680 (838)
T KOG0630|consen  608 PEWAGIGAVCFIPSIVKEGNEEDLNDIAKQEINHLNIDLVEALKSTDAAFSLGDCTRDGL---ICVKFGML----SDEKD  680 (838)
T ss_pred             cccccccceEecccccccCCHhHhhHHHHHHHhhccHHHHHHHhhhhhhcccCCccccce---eEEEeccc----cchhh
Confidence            3344565666666322211   112334456788888999999887755543332 2444   79999984    57889


Q ss_pred             HHHHHHHHHHHHHHhHHhhh
Q psy14299        422 MDYAIDQIELRGAEVDLEMQ  441 (448)
Q Consensus       422 id~l~~al~~~~~~~~~~~~  441 (448)
                      ++.|++.+...+++++.+++
T Consensus       681 leeLldlVaqkGKeieenqq  700 (838)
T KOG0630|consen  681 LEELLDLVAQKGKEIEENQQ  700 (838)
T ss_pred             HHHHHHHHHHhchhhhhHHH
Confidence            99999999888887766554

>PRK14809 histidinol-phosphate aminotransferase; Provisional

Probab=99.44  E-value=6.7e-11  Score=119.53  Aligned_cols=150  Identities=15%  Similarity=0.107  Sum_probs=102.8

Q ss_pred             cEEEeCcHHHHHHHHHHHHHHhcCCcccccCCCCCCCeEEEecCCCchHHHHHHHHhCCCCCcEEEEecCC--CCCcCHH
Q psy14299          4 KPFLLPGGSISNMYSICLARYRLDPDTKRKGLSHLPPLCMFTSEDSHYSMLKAAHWLGIGMDNVIRVKTNE--RGQMICS   81 (448)
Q Consensus         4 ~g~~t~ggT~an~~al~~a~~~~~~~~~~~G~~~~~~~~Vl~~~~~H~s~~~~~~~~g~~~~~v~~v~~~~--~g~id~e   81 (448)
                      ..++|+|+++++.+++.+..+              +++.|+++...+..+...++..|.   .++.++.+.  +..+|.+
T Consensus        84 ~I~it~G~~~al~~~~~~~~~--------------~gd~V~v~~P~y~~~~~~~~~~g~---~~~~~~l~~~~~~~~~~~  146 (357)
T PRK14809         84 QVWLANGGDGALDYLARAMLD--------------PGDTVLVPDPGFAYYGMSARYHHG---EVREYPVSKADDFEQTAD  146 (357)
T ss_pred             eEEECCCHHHHHHHHHHHhcC--------------CCCEEEEeCCChHHHHHHHHHcCC---eEEEEecccCcCCCcCHH
Confidence            467899999998777665543              567788888887777777777787   677787753  4567777


Q ss_pred             HHHHHHHHhhhcCCCcEEEEEeccCCccccccCHHHHHHHHHHc--CCEEEEecccccccccccchhhhhcCCCCccEEE
Q psy14299         82 FLEQTIQTSLAEKKIPLFVNATAGTTVLGAFDPLDEIATVCEKY--DLWMHVDACWGGSLIFSEKYSFVLKGINRANSVS  159 (448)
Q Consensus        82 ~Le~~l~~~~~~~~~~~lVv~~~~~t~tG~~~~l~~I~~ia~~~--g~~l~VD~A~~~~~~~~~~~~~~~~~~~~aD~~~  159 (448)
                      ++++...       ++++|+++.++|+||...+.+++.++++..  ++++++|++|......... .......+ -=+++
T Consensus       147 ~~~~~~~-------~~k~i~l~~p~NPTG~~~s~~~~~~l~~~~~~~~~iI~De~y~~~~~~~~~-~~~~~~~~-~vi~~  217 (357)
T PRK14809        147 TVLDAYD-------GERIVYLTSPHNPTGSEIPLDEVEALAERTDEETLVVVDEAYGEFAERPSA-VALVEERD-DVAVL  217 (357)
T ss_pred             HHHHhhc-------CCcEEEEeCCCCCCCcCCCHHHHHHHHHhCccCcEEEEechhhhccCCchh-HHHHhhCC-CEEEE
Confidence            7766542       367899999999999999988877777654  7899999998754321110 01111100 11455


Q ss_pred             ECCccccCCC-CceEEEEEec
Q psy14299        160 WNPHKMLGAP-LQCSILLIKE  179 (448)
Q Consensus       160 ~s~hK~l~~P-~g~G~l~vr~  179 (448)
                      .++.|.++.| .-+|+++..+
T Consensus       218 ~SfSK~~~~~GlRiG~~~~~~  238 (357)
T PRK14809        218 RTFSKAYGLAGLRLGYAVVPE  238 (357)
T ss_pred             ecchhHhcCcchhheeeecCH
Confidence            6889998755 4467766643

>PRK12381 bifunctional succinylornithine transaminase/acetylornithine transaminase; Provisional

Probab=99.44  E-value=4.3e-11  Score=123.12  Aligned_cols=157  Identities=17%  Similarity=0.114  Sum_probs=95.7

Q ss_pred             cEEEeCcHHHHHHHHHHHHHHhcCCcccccCCCCCCCeEEEecCCCchHHHHHHHHhCCCC---------CcEEEEecCC
Q psy14299          4 KPFLLPGGSISNMYSICLARYRLDPDTKRKGLSHLPPLCMFTSEDSHYSMLKAAHWLGIGM---------DNVIRVKTNE   74 (448)
Q Consensus         4 ~g~~t~ggT~an~~al~~a~~~~~~~~~~~G~~~~~~~~Vl~~~~~H~s~~~~~~~~g~~~---------~~v~~v~~~~   74 (448)
                      .++|+++|++||..|+..+|....    ..+.+ ....+|......|-+...+....+...         ..+..+|.+ 
T Consensus        98 ~v~~~~sGseA~e~Alk~ar~~~~----~~~~~-~r~~ii~~~~~yHG~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-  171 (406)
T PRK12381         98 RVFFCNSGAEANEAALKLARKYAH----DRYGS-HKSGIVAFKNAFHGRTLFTVSAGGQPKYSQDFAPLPPDIRHAAYN-  171 (406)
T ss_pred             eEEEcCCcHHHHHHHHHHHHHHHh----hcCCC-CCCeEEEECCCcCCcchhHHhhcCCcccccCCCCCCCCeeEeCCC-
Confidence            579999999999999999886521    01111 123456666777877665555444210         012333332 


Q ss_pred             CCCcCHHHHHHHHHHhhhcCCCcEEEEEeccCCcccc----ccCHHHHHHHHHHcCCEEEEecccccccccccchhhhhc
Q psy14299         75 RGQMICSFLEQTIQTSLAEKKIPLFVNATAGTTVLGA----FDPLDEIATVCEKYDLWMHVDACWGGSLIFSEKYSFVLK  150 (448)
Q Consensus        75 ~g~id~e~Le~~l~~~~~~~~~~~lVv~~~~~t~tG~----~~~l~~I~~ia~~~g~~l~VD~A~~~~~~~~~~~~~~~~  150 (448)
                          |++++++.+.+      ++.+|++.-.....|.    ..++++|.++|++||+++++|++|.+.......+.....
T Consensus       172 ----d~~~l~~~l~~------~~aaviiEPv~~~gg~~~~~~~~l~~l~~l~~~~~~llI~DEv~tG~gr~G~~~~~~~~  241 (406)
T PRK12381        172 ----DLNSASALIDD------QTCAVIVEPIQGEGGVIPADKAFLQGLRELCDRHNALLIFDEVQTGVGRTGELYAYMHY  241 (406)
T ss_pred             ----CHHHHHHhccC------CeeEEEEeCCcCCCCCcCCCHHHHHHHHHHHHHcCCEEEEcchhhCCCCCcchhhhHhh
Confidence                78999988853      4667777644443443    466899999999999999999998543111111111112


Q ss_pred             CCCCccEEEECCccccCCCCceEEEEEec
Q psy14299        151 GINRANSVSWNPHKMLGAPLQCSILLIKE  179 (448)
Q Consensus       151 ~~~~aD~~~~s~hK~l~~P~g~G~l~vr~  179 (448)
                      ++ ..|.+  +..|.+++-..+|.+..++
T Consensus       242 ~v-~pDi~--t~sK~l~gG~~ig~~~~~~  267 (406)
T PRK12381        242 GV-TPDVL--TTAKALGGGFPIGAMLTTE  267 (406)
T ss_pred             CC-CCCEE--EehhhhhCCCceEEEEEcH
Confidence            33 25764  5579886444577776654

>TIGR03542 DAPAT_plant LL-diaminopimelate aminotransferase

Probab=99.43  E-value=4.7e-11  Score=122.69  Aligned_cols=151  Identities=9%  Similarity=0.014  Sum_probs=97.7

Q ss_pred             cEEEeCcHHHHHHHHHHHHHHhcCCcccccCCCCCCCeEEEecCCCchHHHHHHHHhCCCCC--------cEEEEecCCC
Q psy14299          4 KPFLLPGGSISNMYSICLARYRLDPDTKRKGLSHLPPLCMFTSEDSHYSMLKAAHWLGIGMD--------NVIRVKTNER   75 (448)
Q Consensus         4 ~g~~t~ggT~an~~al~~a~~~~~~~~~~~G~~~~~~~~Vl~~~~~H~s~~~~~~~~g~~~~--------~v~~v~~~~~   75 (448)
                      ..++|+|+++++... .....              +++.|+++...+..+...++..|....        ++..++.++.
T Consensus        97 ~I~it~Ga~~al~~l-~~l~~--------------~gd~Vlv~~P~y~~~~~~~~~~g~~~~~~~~~~~~~~~~v~~~~~  161 (402)
T TIGR03542        97 EIFISDGAKCDVFRL-QSLFG--------------SDNTVAVQDPVYPAYVDSNVMAGRAGVLDDDGRYSKITYLPCTKE  161 (402)
T ss_pred             HEEECCCcHHHHHHH-HHhcC--------------CCCEEEEeCCCCcchHHHHHHcCCccccccccccceEEEeecchh
Confidence            367889999987653 22222              456788888899999999988887111        3566776543


Q ss_pred             CCcCHHHHHHHHHHhhhcCCCcEEEEEeccCCccccccC---HHHHHHHHHHcCCEEEEecccccccccccchhhhhcCC
Q psy14299         76 GQMICSFLEQTIQTSLAEKKIPLFVNATAGTTVLGAFDP---LDEIATVCEKYDLWMHVDACWGGSLIFSEKYSFVLKGI  152 (448)
Q Consensus        76 g~id~e~Le~~l~~~~~~~~~~~lVv~~~~~t~tG~~~~---l~~I~~ia~~~g~~l~VD~A~~~~~~~~~~~~~~~~~~  152 (448)
                      +.++++ +++        ..++++|+++.++|+||.+.+   +++|.++|++||+++++|++|.-.... +.....+..+
T Consensus       162 ~~~~~~-~~~--------~~~~~~i~l~nP~NPTG~~~s~~~~~~l~~~a~~~~~~iI~De~y~~~~~~-~~~~~~~~~~  231 (402)
T TIGR03542       162 NNFIPD-LPE--------EPKIDIIYLCSPNNPTGTVLTKEQLKELVDYANEHGSLILFDAAYSAFISD-PSLPHSIFEI  231 (402)
T ss_pred             hCCCCC-ccc--------cCCceEEEEeCCCCCCCccCCHHHHHHHHHHHHHcCeEEEEEchhhhhccC-CCCCcchhhC
Confidence            323322 111        125789999999999999877   888999999999999999998854321 1101111111


Q ss_pred             CC---ccEEEECCccccCCC-CceEEEEEec
Q psy14299        153 NR---ANSVSWNPHKMLGAP-LQCSILLIKE  179 (448)
Q Consensus       153 ~~---aD~~~~s~hK~l~~P-~g~G~l~vr~  179 (448)
                      ..   .-+++.|+.|.++.| .-+|+++..+
T Consensus       232 ~~~~~~vi~~~SfSK~~g~pGlRiG~~i~~~  262 (402)
T TIGR03542       232 PGAKECAIEFRSFSKTAGFTGVRLGWTVVPK  262 (402)
T ss_pred             CCCcccEEEEecCccccCCCCcceEEEEecH
Confidence            11   124467889988755 4467766633

This clade of the pfam00155 superfamily of aminotransferases includes several which are adjacent to elements of the lysine biosynthesis via diaminopimelate pathway (GenProp0125). This clade includes characterized species in plants and Chlamydia. Every member of this clade is from a genome which possesses most of the lysine biosynthesis pathway but lacks any of the known succinylases, desuccinylases, acetylases or deacetylases typical of the acylated versions of this pathway nor do they have the direct, NADPH-dependent enzyme (ddh).

>PRK08637 hypothetical protein; Provisional

Probab=99.42  E-value=7.7e-11  Score=120.52  Aligned_cols=155  Identities=11%  Similarity=-0.012  Sum_probs=103.3

Q ss_pred             EEEeCcHHHHHHHHHHHHHHhcCCcccccCCCCCCCeEEEecCCCchHHHHHH-HHhCCCCCcEEEEecC-CCCCcCHHH
Q psy14299          5 PFLLPGGSISNMYSICLARYRLDPDTKRKGLSHLPPLCMFTSEDSHYSMLKAA-HWLGIGMDNVIRVKTN-ERGQMICSF   82 (448)
Q Consensus         5 g~~t~ggT~an~~al~~a~~~~~~~~~~~G~~~~~~~~Vl~~~~~H~s~~~~~-~~~g~~~~~v~~v~~~-~~g~id~e~   82 (448)
                      .++|+|+++++.+.+.+..+              +++.|+++...+..+.... ...|.   +++.+|.. +++.+|+++
T Consensus        72 I~it~G~~~al~~~~~~l~~--------------~gd~Vlv~~P~y~~~~~~~~~~~g~---~vv~v~~~~~~~~~d~~~  134 (388)
T PRK08637         72 PIVTNALTHGLSLVADLFVD--------------QGDTVLLPDHNWGNYKLTFNTRRGA---EIVTYPIFDEDGGFDTDA  134 (388)
T ss_pred             eeEccchHHHHHHHHHHhcC--------------CCCEEEEcCCCCccHHHHHHHhcCC---EEEEecccCCCCcCCHHH
Confidence            57899999998777665543              5677888988888888764 45677   78888873 556789999


Q ss_pred             HHHHHHHhhhcCCCcEEEEEeccCCccccccC---HHHHHHHHHH-----cCCEEEEecccccccccccchhh---hhcC
Q psy14299         83 LEQTIQTSLAEKKIPLFVNATAGTTVLGAFDP---LDEIATVCEK-----YDLWMHVDACWGGSLIFSEKYSF---VLKG  151 (448)
Q Consensus        83 Le~~l~~~~~~~~~~~lVv~~~~~t~tG~~~~---l~~I~~ia~~-----~g~~l~VD~A~~~~~~~~~~~~~---~~~~  151 (448)
                      +++.++..  ......+++++.++|+||...+   +++|+++|++     |++++++|.+|............   .+.+
T Consensus       135 l~~~~~~~--~~~~~~~~~~~~P~NPTG~~~s~~~~~~l~~~~~~~~~~~~~~~iI~De~Y~~l~~~~~~~~~~~~~~~~  212 (388)
T PRK08637        135 LKEALQAA--YNKGKVIVILNFPNNPTGYTPTEKEATAIVEAIKELADAGTKVVAVVDDAYFGLFYEDSYKESLFAALAN  212 (388)
T ss_pred             HHHHHHhh--ccCCCEEEEEeCCCCCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEecccchhcccCCccchhhHHHhhc
Confidence            99998721  1123456778889999997755   5667777765     89999999998755432111100   0111


Q ss_pred             C-CCccEEE-ECCccccCCCC-ceEEEEEe
Q psy14299        152 I-NRANSVS-WNPHKMLGAPL-QCSILLIK  178 (448)
Q Consensus       152 ~-~~aD~~~-~s~hK~l~~P~-g~G~l~vr  178 (448)
                      . +.+-.+. .++.|.++.|. -+|++++.
T Consensus       213 ~~~~vi~i~~~s~SK~~~~pGlRlG~~~~~  242 (388)
T PRK08637        213 LHSNILAVKLDGATKEEFVWGFRVGFITFG  242 (388)
T ss_pred             ccccceEEEeccccccCCCcccceEEEEEc
Confidence            1 1121222 38889766553 37777654

>PRK08117 4-aminobutyrate aminotransferase; Provisional

Probab=99.42  E-value=1.8e-10  Score=119.53  Aligned_cols=162  Identities=14%  Similarity=0.057  Sum_probs=100.8

Q ss_pred             cEEEeCcHHHHHHHHHHHHHHhcCCcccccCCCCCCCeEEEecCCCchHHHHHHHHhCC--------C--CCcEEEEecC
Q psy14299          4 KPFLLPGGSISNMYSICLARYRLDPDTKRKGLSHLPPLCMFTSEDSHYSMLKAAHWLGI--------G--MDNVIRVKTN   73 (448)
Q Consensus         4 ~g~~t~ggT~an~~al~~a~~~~~~~~~~~G~~~~~~~~Vl~~~~~H~s~~~~~~~~g~--------~--~~~v~~v~~~   73 (448)
                      .++|+++||+||..|+..||...           ....+|......|-+...+....+-        .  ...+..+|.+
T Consensus       105 ~v~f~~SGseA~e~AlklAr~~t-----------gr~~ii~~~~~yHG~t~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~  173 (433)
T PRK08117        105 CFFFSNSGAEAIEGALKLAKHVT-----------KRPYIISFTGCFHGRTLGALSVTTSKSKYRKYYQPLLGSVYQAPYP  173 (433)
T ss_pred             EEEEeCcHHHHHHHHHHHHHHhc-----------CCCeEEEECCCcCCcCHHHHhhcCCCccccccCCCCCCCcEEeCCC
Confidence            46899999999999999988742           1334566667778776655443321        0  0113344433


Q ss_pred             CCCC------------cCHHHHHHHHHHhhhcCCCcEEEEEeccCCccccccC----HHHHHHHHHHcCCEEEEeccccc
Q psy14299         74 ERGQ------------MICSFLEQTIQTSLAEKKIPLFVNATAGTTVLGAFDP----LDEIATVCEKYDLWMHVDACWGG  137 (448)
Q Consensus        74 ~~g~------------id~e~Le~~l~~~~~~~~~~~lVv~~~~~t~tG~~~~----l~~I~~ia~~~g~~l~VD~A~~~  137 (448)
                      ...+            -|++++++.+++.. .+..+.+|++.-...+.|.+.|    +++|.++|++||+++++|.+|++
T Consensus       174 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~-~~~~~aavi~Epi~~~~G~~~~~~~~l~~l~~lc~~~g~llI~DEv~tG  252 (433)
T PRK08117        174 YCDRCPKGEDPEVCFLECLRDLESLFKHQV-TPEEVAAVIIEPVLGEGGYIVPPKSFLKKLREICDRHGILLIFDEVQTG  252 (433)
T ss_pred             ccccccccCchhHHHHHHHHHHHHHHHhcc-CCCcEEEEEECCeeCCCCCccCCHHHHHHHHHHHHHcCCEEEEecchhc
Confidence            2111            15666777775311 1235667888878788898888    99999999999999999999885


Q ss_pred             ccccccchhhhhcCCCCccEEEECCccccCCCCceEEEEEecc
Q psy14299        138 SLIFSEKYSFVLKGINRANSVSWNPHKMLGAPLQCSILLIKEK  180 (448)
Q Consensus       138 ~~~~~~~~~~~~~~~~~aD~~~~s~hK~l~~P~g~G~l~vr~~  180 (448)
                      .-.....+.....++ ..|+  .+..|.+++-..+|.+..+++
T Consensus       253 ~gr~G~~~~~~~~gv-~pDi--~t~sK~lg~G~pigav~~~~~  292 (433)
T PRK08117        253 FGRTGEWFAAQTFGV-VPDI--MTIAKGIASGLPLSAVVASKE  292 (433)
T ss_pred             cCccccchhHhhcCC-CCCE--eehhhhccCCCcceeEEEcHH
Confidence            211111111011122 2465  466898874344777766543

>TIGR03372 putres_am_tran putrescine aminotransferase

Probab=99.42  E-value=2.6e-10  Score=118.12  Aligned_cols=161  Identities=14%  Similarity=0.113  Sum_probs=100.9

Q ss_pred             cEEEeCcHHHHHHHHHHHHHHhcCCcccccCCCCCCCeEEEecCCCchHHHHHHHHhCCC---------CCcEEEEecCC
Q psy14299          4 KPFLLPGGSISNMYSICLARYRLDPDTKRKGLSHLPPLCMFTSEDSHYSMLKAAHWLGIG---------MDNVIRVKTNE   74 (448)
Q Consensus         4 ~g~~t~ggT~an~~al~~a~~~~~~~~~~~G~~~~~~~~Vl~~~~~H~s~~~~~~~~g~~---------~~~v~~v~~~~   74 (448)
                      .++|+++|||||-.|+..||....    ..|    ...+|......|-...-+....+-.         ...+..+|.+ 
T Consensus       136 ~v~f~~SGsEA~e~AlklAr~~t~----~~g----r~~ii~~~~~yHG~t~~~ls~t~~~~~~~~~~p~~~~~~~~p~~-  206 (442)
T TIGR03372       136 YSFFCNSGTESVEAALKLAKAYQS----PRG----KFTFIAASGAFHGKSLGALSATAKPAFRKPFMPLLPGFHHVAFG-  206 (442)
T ss_pred             EEEEeCCchHHHHHHHHHHHHHHh----hcC----CcEEEEECCCccCCCHHHhhccCCcccCCCCCCCCCCCEEeCCC-
Confidence            378999999999999999987521    011    2234555555665544444332210         0113344433 


Q ss_pred             CCCcCHHHHHHHHHHhhhcCCCcEEEEEeccCCccccccC----HHHHHHHHHHcCCEEEEecccccccccccchhhhhc
Q psy14299         75 RGQMICSFLEQTIQTSLAEKKIPLFVNATAGTTVLGAFDP----LDEIATVCEKYDLWMHVDACWGGSLIFSEKYSFVLK  150 (448)
Q Consensus        75 ~g~id~e~Le~~l~~~~~~~~~~~lVv~~~~~t~tG~~~~----l~~I~~ia~~~g~~l~VD~A~~~~~~~~~~~~~~~~  150 (448)
                          |.+.+++.+++....+..+.+|++.-.....|.+.|    +++|.++|++||+.+++|++|.+.--...-+.....
T Consensus       207 ----d~~~~~~~l~~~~~~~~~vAavIvEpv~g~gG~~~p~~~yl~~l~~lc~~~g~llI~DEV~tG~GRtG~~~a~e~~  282 (442)
T TIGR03372       207 ----DIEAMLKALNECKKTGDDVAAIILEPIQGEGGVILPPEGYLPAVRALCDEFGALLILDEVQTGMGRTGKMFACEHE  282 (442)
T ss_pred             ----CHHHHHHHHHHHhcCCCcEEEEEEeCccCCCCcccCCHHHHHHHHHHHHHcCCEEEEeecccCCCccccchhhhhc
Confidence                778888888653333345677888877777888888    999999999999999999998542111111111112


Q ss_pred             CCCCccEEEECCccccCCC-CceEEEEEecc
Q psy14299        151 GINRANSVSWNPHKMLGAP-LQCSILLIKEK  180 (448)
Q Consensus       151 ~~~~aD~~~~s~hK~l~~P-~g~G~l~vr~~  180 (448)
                      ++ ..|+++  ..|.+++- ..+|.++.+++
T Consensus       283 gv-~PDivt--~gK~lg~G~~Pigavv~~~~  310 (442)
T TIGR03372       283 GV-QPDILC--LAKALGGGVMPIGATIATEA  310 (442)
T ss_pred             CC-CCCeee--ehhhhcCCcccceEEEecHH
Confidence            33 368776  58988753 24677666543

Members of this family are putrescine aminotransferase, as found in Escherichia coli, Erwinia carotovora subsp. atroseptica, and closely related species. This pyridoxal phosphate enzyme, as characterized in E. coli, can act also on cadaverine and, more weakly, spermidine.

>PLN02368 alanine transaminase

Probab=99.41  E-value=3.8e-11  Score=123.38  Aligned_cols=121  Identities=14%  Similarity=0.043  Sum_probs=98.7

Q ss_pred             cEEEeCcHHHHHHHHHHHHHHhcCCcccccCCCCCCCeEEEecCCCchHHHHHHHHhCCCCCcEEEEecCC--CCCcCHH
Q psy14299          4 KPFLLPGGSISNMYSICLARYRLDPDTKRKGLSHLPPLCMFTSEDSHYSMLKAAHWLGIGMDNVIRVKTNE--RGQMICS   81 (448)
Q Consensus         4 ~g~~t~ggT~an~~al~~a~~~~~~~~~~~G~~~~~~~~Vl~~~~~H~s~~~~~~~~g~~~~~v~~v~~~~--~g~id~e   81 (448)
                      ..++|+|+++++..++.+....             +++.|+++...+..+...++..|.   +++.++.++  ++.+|++
T Consensus       132 ~I~it~Ga~~al~~~~~~l~~~-------------pGd~Vli~~P~Y~~y~~~~~~~g~---~~v~v~~~~~~~~~~d~~  195 (407)
T PLN02368        132 LIFLTDGASKGVMQILNAVIRG-------------EKDGVLVPVPQYPLYSATISLLGG---TLVPYYLEESENWGLDVN  195 (407)
T ss_pred             hEEEcccHHHHHHHHHHHHcCC-------------CCCEEEEeCCCCccHHHHHHHcCC---EEEEEecccccCCCCCHH
Confidence            5789999999988877765432             677899999999999999999998   788888865  3689999


Q ss_pred             HHHHHHHHhhhcCCCcEEEEEeccCCccccccC---HHHHHHHHHHcCCEEEEecccccccc
Q psy14299         82 FLEQTIQTSLAEKKIPLFVNATAGTTVLGAFDP---LDEIATVCEKYDLWMHVDACWGGSLI  140 (448)
Q Consensus        82 ~Le~~l~~~~~~~~~~~lVv~~~~~t~tG~~~~---l~~I~~ia~~~g~~l~VD~A~~~~~~  140 (448)
                      +|++.+++...++.++++++++.++|+||.+.+   +++|.++|++||++++.|.+|.-..+
T Consensus       196 ~le~~i~~~~~~~~~~k~l~l~nP~NPTG~v~s~e~l~~l~~~a~~~~~~II~DE~Y~~l~y  257 (407)
T PLN02368        196 NLRQSVAQARSKGITVRAMVIINPGNPTGQCLSEANLREILKFCYQERLVLLGDEVYQQNIY  257 (407)
T ss_pred             HHHHHHHHHhhcCCCeEEEEEECCCCCCCccCCHHHHHHHHHHHHHcCCEEEEEcccccccc
Confidence            999999753333336889999999999998866   66778889999999999999876543

>PRK09440 avtA valine--pyruvate transaminase; Provisional

Probab=99.41  E-value=1.4e-10  Score=119.53  Aligned_cols=155  Identities=14%  Similarity=0.065  Sum_probs=93.2

Q ss_pred             cEEEeCcHHHHHHHHHHHHHHhcCCcccccCCCCCCCeEEEe-cCCCchHHHHHHHHhCC-CCCcEEEEecCC---CCCc
Q psy14299          4 KPFLLPGGSISNMYSICLARYRLDPDTKRKGLSHLPPLCMFT-SEDSHYSMLKAAHWLGI-GMDNVIRVKTNE---RGQM   78 (448)
Q Consensus         4 ~g~~t~ggT~an~~al~~a~~~~~~~~~~~G~~~~~~~~Vl~-~~~~H~s~~~~~~~~g~-~~~~v~~v~~~~---~g~i   78 (448)
                      ..++|+|+++++.+++.+......         ..+++.|++ ...+++.+...+...+. .......++.+.   +..+
T Consensus        99 ~I~it~Ga~~al~~~~~~l~~~~~---------~~~gd~v~i~~~P~y~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  169 (416)
T PRK09440         99 NIALTNGSQSAFFYLFNLFAGRRA---------DGSLKKILFPLAPEYIGYADAGLEEDLFVSYRPNIELLPEGQFKYHV  169 (416)
T ss_pred             hEEEccChHHHHHHHHHHHhcccc---------CCCCCeEEEecCCCchhhHHHhhccCceeecccccccccccccccCC
Confidence            467899999998777766554200         014566777 46677666665543332 000122233333   2578


Q ss_pred             CHHHHHHHHHHhhhcCCCcEEEEEeccCCccccccC---HHHHHHHHHHcCCEEEEecccccccccccchhhhhcCCCCc
Q psy14299         79 ICSFLEQTIQTSLAEKKIPLFVNATAGTTVLGAFDP---LDEIATVCEKYDLWMHVDACWGGSLIFSEKYSFVLKGINRA  155 (448)
Q Consensus        79 d~e~Le~~l~~~~~~~~~~~lVv~~~~~t~tG~~~~---l~~I~~ia~~~g~~l~VD~A~~~~~~~~~~~~~~~~~~~~a  155 (448)
                      |+++|+  +.      .++++++++.++|+||.+.+   +++|+++|++||+++++|.+|+-..... ...........-
T Consensus       170 d~~~l~--~~------~~~~~i~l~~P~NPTG~~~s~~~~~~l~~~a~~~~~~iI~De~Y~~~~~~~-~~~~~~~~~~~~  240 (416)
T PRK09440        170 DFEHLH--ID------EDTGAICVSRPTNPTGNVLTDEELEKLDALARQHNIPLLIDNAYGPPFPGI-IFSEATPLWNPN  240 (416)
T ss_pred             CHHHcc--cC------CCceEEEEecCCCCCCccCCHHHHHHHHHHHHHcCCcEEEeCCccccCCCc-chhhcCccccCC
Confidence            999987  21      24689999999999998877   6788889999999999999996321100 000000000001


Q ss_pred             cEEEECCccccCCC-CceEEEEE
Q psy14299        156 NSVSWNPHKMLGAP-LQCSILLI  177 (448)
Q Consensus       156 D~~~~s~hK~l~~P-~g~G~l~v  177 (448)
                      =+++.|+.|. +.| .-+|+++.
T Consensus       241 vI~~~SfSK~-~~pGlRiG~~i~  262 (416)
T PRK09440        241 IILCMSLSKL-GLPGVRCGIVIA  262 (416)
T ss_pred             eEEEeccccc-CCCcceEEEEeC
Confidence            1556788996 444 33565554

>PRK09257 aromatic amino acid aminotransferase; Provisional

Probab=99.40  E-value=3.3e-10  Score=116.12  Aligned_cols=155  Identities=13%  Similarity=0.032  Sum_probs=110.7

Q ss_pred             EEEeCcHHHHHHHHHHHHHHhcCCcccccCCCCCCCeEEEecCCCchHHHHHHHHhCCCCCcEEEEec-C-CCCCcCHHH
Q psy14299          5 PFLLPGGSISNMYSICLARYRLDPDTKRKGLSHLPPLCMFTSEDSHYSMLKAAHWLGIGMDNVIRVKT-N-ERGQMICSF   82 (448)
Q Consensus         5 g~~t~ggT~an~~al~~a~~~~~~~~~~~G~~~~~~~~Vl~~~~~H~s~~~~~~~~g~~~~~v~~v~~-~-~~g~id~e~   82 (448)
                      +++|+|+++++.+++.....-            .+++.|++++..+..+...++..|.   +++.+|. + +++.+|++.
T Consensus        97 v~iT~Ga~~al~~~~~~l~~~------------~pGd~Vlv~~P~y~~~~~~~~~~g~---~~v~v~~~~~~~~~~d~~~  161 (396)
T PRK09257         97 TVQTPGGTGALRVGADFLKRA------------FPDAKVWVSDPTWPNHRAIFEAAGL---EVKTYPYYDAATKGLDFDA  161 (396)
T ss_pred             EEecCCccHHHHHHHHHHHHh------------CCCCeEEECCCCcccHHHHHHHcCC---cEEEEeccccccCccCHHH
Confidence            489999999988887544321            1677899999999999999999999   7888987 2 357899999


Q ss_pred             HHHHHHHhhhcCCCcEEEEEeccCCccccccC---HHHHHHHHHHcCCEEEEecccccccccccc-hhh--hhcCCCCcc
Q psy14299         83 LEQTIQTSLAEKKIPLFVNATAGTTVLGAFDP---LDEIATVCEKYDLWMHVDACWGGSLIFSEK-YSF--VLKGINRAN  156 (448)
Q Consensus        83 Le~~l~~~~~~~~~~~lVv~~~~~t~tG~~~~---l~~I~~ia~~~g~~l~VD~A~~~~~~~~~~-~~~--~~~~~~~aD  156 (448)
                      +++.+++.   ..+.+++++..++|+||...+   +++|+++|++||++++.|.+|......... ...  .+.+...-=
T Consensus       162 l~~~~~~~---~~~~~~~i~~~p~NPTG~~~s~~~~~~l~~~a~~~~~~ii~De~Y~~l~~~~~~~~~~~~~~~~~~~~v  238 (396)
T PRK09257        162 MLADLSQA---PAGDVVLLHGCCHNPTGADLTPEQWDELAELLKERGLIPFLDIAYQGFGDGLEEDAYGLRAFAAAGLEL  238 (396)
T ss_pred             HHHHHHhC---CCCCEEEEeCCCCCCCCCCCCHHHHHHHHHHHHhCCcEEEEeccccccccchHHHHHHHHHHHhcCCcE
Confidence            99988642   123467777999999998755   677888999999999999998754321110 111  011111112


Q ss_pred             EEEECCccccCCC-CceEEEEE
Q psy14299        157 SVSWNPHKMLGAP-LQCSILLI  177 (448)
Q Consensus       157 ~~~~s~hK~l~~P-~g~G~l~v  177 (448)
                      +++.|+.|.++.| .-+|++++
T Consensus       239 i~i~SfSK~~~~~GlRiG~~~~  260 (396)
T PRK09257        239 LVASSFSKNFGLYGERVGALSV  260 (396)
T ss_pred             EEEEEcCCcCccccccceeEEE
Confidence            5678999998753 45676653

>PRK14808 histidinol-phosphate aminotransferase; Provisional

Probab=99.40  E-value=1e-10  Score=117.21  Aligned_cols=145  Identities=12%  Similarity=-0.007  Sum_probs=102.6

Q ss_pred             cEEEeCcHHHHHHHHHHHHHHhcCCcccccCCCCCCCeEEEecCCCchHHHHHHHHhCCCCCcEEEEecCCCCCcCHHHH
Q psy14299          4 KPFLLPGGSISNMYSICLARYRLDPDTKRKGLSHLPPLCMFTSEDSHYSMLKAAHWLGIGMDNVIRVKTNERGQMICSFL   83 (448)
Q Consensus         4 ~g~~t~ggT~an~~al~~a~~~~~~~~~~~G~~~~~~~~Vl~~~~~H~s~~~~~~~~g~~~~~v~~v~~~~~g~id~e~L   83 (448)
                      ..++|+|+++++..++.+. .                 .|++...++..+...++..|.   +++.+|.++++.++... 
T Consensus        78 ~i~it~Ga~~~i~~~~~~~-d-----------------~v~v~~P~y~~~~~~~~~~g~---~~~~v~~~~~~~~~~~~-  135 (335)
T PRK14808         78 NVSVGNGADEIIYVMMLMF-D-----------------RSVFFPPTYSCYRIFAKAVGA---KFLEVPLTKDLRIPEVN-  135 (335)
T ss_pred             eEEEcCCHHHHHHHHHHHh-C-----------------cEEECCCCHHHHHHHHHHcCC---eEEEecCCCcCCCChhH-
Confidence            4788999999988776543 1                 267788999999999999999   78999988777665332 


Q ss_pred             HHHHHHhhhcCCCcEEEEEeccCCccccccCHHHHHHHHHHcCCEEEEecccccccccccchhhhhcCCCCccEEEECCc
Q psy14299         84 EQTIQTSLAEKKIPLFVNATAGTTVLGAFDPLDEIATVCEKYDLWMHVDACWGGSLIFSEKYSFVLKGINRANSVSWNPH  163 (448)
Q Consensus        84 e~~l~~~~~~~~~~~lVv~~~~~t~tG~~~~l~~I~~ia~~~g~~l~VD~A~~~~~~~~~~~~~~~~~~~~aD~~~~s~h  163 (448)
                         +.       ++++++++.++|+||...+.+++.+++ ++++++++|.+|.-..-  ......+.... -=+++.|+.
T Consensus       136 ---~~-------~~~~i~i~nP~NPTG~~~s~~~l~~l~-~~~~~ii~DE~Y~~f~~--~~~~~~~~~~~-~vi~~~S~S  201 (335)
T PRK14808        136 ---VG-------EGDVVFIPNPNNPTGHVFEREEIERIL-KTGAFVALDEAYYEFHG--ESYVDLLKKYE-NLAVIRTFS  201 (335)
T ss_pred             ---cc-------CCCEEEEeCCCCCCCCCcCHHHHHHHH-hcCCEEEEECchhhhcC--CchHHHHHhCC-CEEEEEech
Confidence               21       357899999999999999999999998 58999999999874311  11111111111 125567889


Q ss_pred             cccCCC-CceEEEEEeccchhhh
Q psy14299        164 KMLGAP-LQCSILLIKEKGLLHQ  185 (448)
Q Consensus       164 K~l~~P-~g~G~l~vr~~~~~~~  185 (448)
                      |.++.| .-+|+++..+ ++...
T Consensus       202 K~~~l~GlRvG~~v~~~-~~~~~  223 (335)
T PRK14808        202 KAFSLAAQRIGYVVSSE-KFIDA  223 (335)
T ss_pred             hhccCcccceEEEEeCH-HHHHH
Confidence            998854 3467766543 44433

>COG0160 GabT 4-aminobutyrate aminotransferase and related aminotransferases [Amino acid transport and metabolism]

Probab=99.40  E-value=3e-10  Score=115.94  Aligned_cols=298  Identities=16%  Similarity=0.164  Sum_probs=184.3

Q ss_pred             cEEEeCcHHHHHHHHHHHHHHhcCCcccccCCCCCCCeEEEecCCCchHHHHHHHHhCCC----------CCcEEEEecC
Q psy14299          4 KPFLLPGGSISNMYSICLARYRLDPDTKRKGLSHLPPLCMFTSEDSHYSMLKAAHWLGIG----------MDNVIRVKTN   73 (448)
Q Consensus         4 ~g~~t~ggT~an~~al~~a~~~~~~~~~~~G~~~~~~~~Vl~~~~~H~s~~~~~~~~g~~----------~~~v~~v~~~   73 (448)
                      ..+|+++||+||=.|+..||..-.           ...+|-....-|-....+..+.+..          ...+..+|.+
T Consensus       119 ~~~f~~sGaeA~E~AiKiAr~~Tg-----------r~~viaf~~afHG~T~galslT~~~~~~~~~~~~~~~~v~~~Pyp  187 (447)
T COG0160         119 KVFFGNSGAEAVEAAIKIARAYTG-----------RPGVIAFDGAFHGRTLGALSLTGSKPPYKAGFGPLPPGVYHVPYP  187 (447)
T ss_pred             eEEecCCcHHHHHHHHHHHHHHhC-----------CCcEEEECCcccccchhhHHhccCccccccCCCCCCCCeEEecCC
Confidence            478999999999999999998631           2345666777887777666665431          1126677765


Q ss_pred             CCC------------CcCHHHHHHHHHHhhhcCCCcEEEEEeccCCccccccC----HHHHHHHHHHcCCEEEEeccccc
Q psy14299         74 ERG------------QMICSFLEQTIQTSLAEKKIPLFVNATAGTTVLGAFDP----LDEIATVCEKYDLWMHVDACWGG  137 (448)
Q Consensus        74 ~~g------------~id~e~Le~~l~~~~~~~~~~~lVv~~~~~t~tG~~~~----l~~I~~ia~~~g~~l~VD~A~~~  137 (448)
                      ...            .-..+.+++.+.+....+..+.++++.-.....|.+.|    ++++.++|++||+++++|..|.+
T Consensus       188 ~~yr~p~~~~~~~~~~~~~~~~e~~i~~~~~~~~~vAaiI~EpIQgegG~~v~p~~fl~~l~~~~~~~gillI~DEVQtG  267 (447)
T COG0160         188 NPYRCPFGIGGEECGDDALEYIERALFDLEVGPEEVAAIIIEPIQGEGGIIVPPKGFLKALRKLCREHGILLIADEVQTG  267 (447)
T ss_pred             ccccCcccCchhhhhHHHHHHHHHHHHhhcCCCCceeEEEEecccCCCCCcCCCHHHHHHHHHHHHHcCCEEEEeccccC
Confidence            322            12345566766655445557888999888888888766    89999999999999999999887


Q ss_pred             ccccccchhhhhcCCCCccEEEECCccccCCCCceEEEEEeccchhhhhccCCcccccccCcccccccCCCCCcccCCCC
Q psy14299        138 SLIFSEKYSFVLKGINRANSVSWNPHKMLGAPLQCSILLIKEKGLLHQANATAATYLFQQDKFYDVSFDTGDKSVQCGRK  217 (448)
Q Consensus       138 ~~~~~~~~~~~~~~~~~aD~~~~s~hK~l~~P~g~G~l~vr~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~  217 (448)
                      .--...-|...-.++ ..|++++  .|.+++-...|.+..|.+ +.. ..+....+.+                  .+.+
T Consensus       268 ~GRTG~~fa~E~~gv-~PDivt~--aK~ig~G~Pl~avv~r~e-i~~-~~~g~~~~Tf------------------~GNp  324 (447)
T COG0160         268 FGRTGKMFAFEHFGV-EPDIVTL--AKSLGGGLPLSAVVGRAE-IMD-WPPGGHGGTF------------------GGNP  324 (447)
T ss_pred             CCccccchhhhhcCC-CCCEEEe--cccccCCCceeEEeccHH-hcc-cCCcccCCCC------------------CcCH
Confidence            543332233223344 4788886  688877666777777554 322 1111111110                  1111


Q ss_pred             chhHHHHHHHHHhChHHHHHHHHHhhhhccCCCccchhhhhhhhhhhhhhhhhhhhhhhccccccccccCCCCCcccccc
Q psy14299        218 VDAFKLWLMWKARGNLGFRHFVDNAVDCSRGSMTFSTLLCFDLQGLLHQANATAATYLFQQDKFYDVSFDTGDKSVQCGR  297 (448)
Q Consensus       218 ~~~~~~~~~~~~~g~~g~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  297 (448)
                                                                                                      
T Consensus       325 --------------------------------------------------------------------------------  324 (447)
T COG0160         325 --------------------------------------------------------------------------------  324 (447)
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             chhhHHHHHHHHHhcCccHHHHHHHHHHHHHHHHHHhhcCC-CeEEeccCCc--eeeEEEEee-ccCCCccccchhhhhh
Q psy14299        298 KVDAFKLWLMWKARGNLGFRHFVDNAVDCSRYFLSQISQRP-GFRLVIPEFQ--CTNICFWFI-PVSLRDKVEDETWWST  373 (448)
Q Consensus       298 ~~~~~~~~~~~~~~~~~G~~~~~~~~~~l~~~~~~~L~~~p-g~~l~~~~~~--~~~v~f~~~-~~~~~~~~~~~~~~~~  373 (448)
                       +.+.+....|+.+.++   .+.++..++.+|++++|.++. .+.++ .+.+  .-.+.+.+. +.+-+  ..+      
T Consensus       325 -va~Aaa~AvL~vie~e---~L~~~a~~~G~~l~~~L~~l~~~~~~I-gdVRG~Glm~giE~v~d~~t~--~p~------  391 (447)
T COG0160         325 -VACAAALAVLDVIEEE---NLLERAAELGEYLRDRLEELQEKHPLI-GDVRGLGLMIGVELVKDRDTK--EPD------  391 (447)
T ss_pred             -HHHHHHHHHHHHHHHc---cHHHHHHHHHHHHHHHHHHHHhhcCce-ecccccceEEEEEEecCCCCC--CCC------
Confidence             1122222334433444   355666777888888877652 23344 3333  223333332 11111  000      


Q ss_pred             hhhhhHHHHHHHHhCCcEEEEeeecCCcccccEEEEEecCCCCCCHHHHHHHHHHHHHHHHHh
Q psy14299        374 LSKVAPRIKEKLVLGGTLMIGYQPLQHRNLHNFFRLVTTCHPASSRQDMDYAIDQIELRGAEV  436 (448)
Q Consensus       374 ~~~~~~~i~~~L~~~g~~~~~~~~~~g~~~~~~lRis~~~~~~~t~edid~l~~al~~~~~~~  436 (448)
                       ......+.+.+.++|.++...+ ..+    +.+||.+  -...+++++|..+++|++..++.
T Consensus       392 -~~~~~~i~~~~~~~Glil~~~G-~~~----nviRi~P--PL~is~e~~d~~l~il~~al~~~  446 (447)
T COG0160         392 -AELAAKIVARAFERGLLLLTCG-PHG----NVLRILP--PLTISDEELDEGLDILEEALKEA  446 (447)
T ss_pred             -HHHHHHHHHHHHHcCCEEeccC-CCC----cEEEEeC--CcccCHHHHHHHHHHHHHHHHhh
Confidence             1245689999999996554433 223    6999999  68899999999999999988753

>PRK08354 putative aminotransferase; Provisional

Probab=99.40  E-value=1.3e-10  Score=115.16  Aligned_cols=137  Identities=12%  Similarity=0.029  Sum_probs=99.0

Q ss_pred             cEEEeCcHHHHHHHHHHHHHHhcCCcccccCCCCCCCeEEEecCCCchHHHHHHHHhCCCCCcEEEEecCCCCCcCHHHH
Q psy14299          4 KPFLLPGGSISNMYSICLARYRLDPDTKRKGLSHLPPLCMFTSEDSHYSMLKAAHWLGIGMDNVIRVKTNERGQMICSFL   83 (448)
Q Consensus         4 ~g~~t~ggT~an~~al~~a~~~~~~~~~~~G~~~~~~~~Vl~~~~~H~s~~~~~~~~g~~~~~v~~v~~~~~g~id~e~L   83 (448)
                      ..++|+|+++++.+.+.. ..              +++.|+++...+..+...++..|.   ++..++      +|++.+
T Consensus        56 ~I~vt~G~~~al~~~~~~-~~--------------~gd~vlv~~P~y~~~~~~~~~~g~---~~~~~~------~d~~~l  111 (311)
T PRK08354         56 PIVITAGITEALYLIGIL-AL--------------RDRKVIIPRHTYGEYERVARFFAA---RIIKGP------NDPEKL  111 (311)
T ss_pred             CEEECCCHHHHHHHHHHh-hC--------------CCCeEEEeCCCcHHHHHHHHHcCC---EEeecC------CCHHHH
Confidence            578999999997655432 22              456788999999999999999998   665543      588888


Q ss_pred             HHHHHHhhhcCCCcEEEEEeccCCccccccC---HHHHHHHHHHcCCEEEEecccccccccccchhhhhcCCCCccEEEE
Q psy14299         84 EQTIQTSLAEKKIPLFVNATAGTTVLGAFDP---LDEIATVCEKYDLWMHVDACWGGSLIFSEKYSFVLKGINRANSVSW  160 (448)
Q Consensus        84 e~~l~~~~~~~~~~~lVv~~~~~t~tG~~~~---l~~I~~ia~~~g~~l~VD~A~~~~~~~~~~~~~~~~~~~~aD~~~~  160 (448)
                      ++.+++       ++.++++.++|+||.+.+   +++|.++|+++|+++++|+++........  ..  .  ..--+++.
T Consensus       112 ~~~~~~-------~~~vi~~~P~NPTG~~~~~~~l~~l~~~a~~~~~~li~De~y~~f~~~~~--~~--~--~~~vi~~~  178 (311)
T PRK08354        112 EELVER-------NSVVFFCNPNNPDGKFYNFKELKPLLDAVEDRNALLILDEAFIDFVKKPE--SP--E--GENIIKLR  178 (311)
T ss_pred             HHhhcC-------CCEEEEecCCCCCCCccCHHHHHHHHHHhhhcCcEEEEeCcchhcccccc--cc--C--CCcEEEEe
Confidence            887642       457888999999998866   56677888999999999999975443111  00  0  01135667


Q ss_pred             CCccccCCC-CceEEEEE
Q psy14299        161 NPHKMLGAP-LQCSILLI  177 (448)
Q Consensus       161 s~hK~l~~P-~g~G~l~v  177 (448)
                      |+.|.++.| .-+|+++.
T Consensus       179 S~SK~~~l~GlRiG~~v~  196 (311)
T PRK08354        179 TFTKSYGLPGIRVGYVKG  196 (311)
T ss_pred             ccHhhcCCccceeeeeee
Confidence            889998865 33566554

>PF01053 Cys_Met_Meta_PP: Cys/Met metabolism PLP-dependent enzyme; InterPro: IPR000277 Pyridoxal phosphate is the active form of vitamin B6 (pyridoxine or pyridoxal)

Probab=99.40  E-value=2.1e-10  Score=116.61  Aligned_cols=141  Identities=14%  Similarity=0.141  Sum_probs=103.6

Q ss_pred             cEEEeCcHHHHHHHHHHHHHHhcCCcccccCCCCCCCeEEEecCCCchHHHHHHH----HhCCCCCcEEEEecCCCCCcC
Q psy14299          4 KPFLLPGGSISNMYSICLARYRLDPDTKRKGLSHLPPLCMFTSEDSHYSMLKAAH----WLGIGMDNVIRVKTNERGQMI   79 (448)
Q Consensus         4 ~g~~t~ggT~an~~al~~a~~~~~~~~~~~G~~~~~~~~Vl~~~~~H~s~~~~~~----~~g~~~~~v~~v~~~~~g~id   79 (448)
                      .++.+++|.-|+..++....+              +++.|+++...+......++    ..|+   ++..++..     |
T Consensus        72 ~a~~~~SGmaAi~~~l~~ll~--------------~Gd~iv~~~~~Y~~t~~~~~~~l~~~gv---~v~~~d~~-----d  129 (386)
T PF01053_consen   72 DALLFSSGMAAISAALLALLK--------------PGDHIVASDDLYGGTYRLLEELLPRFGV---EVTFVDPT-----D  129 (386)
T ss_dssp             EEEEESSHHHHHHHHHHHHS---------------TTBEEEEESSSSHHHHHHHHHCHHHTTS---EEEEESTT-----S
T ss_pred             ceeeccchHHHHHHHHHhhcc--------------cCCceEecCCccCcchhhhhhhhcccCc---EEEEeCch-----h
Confidence            467788998888777776544              56677778777766555544    3466   67777654     8


Q ss_pred             HHHHHHHHHHhhhcCCCcEEEEEeccCCccccccCHHHHHHHHHHcC-CEEEEecccccccccccchhhhhcCCCCccEE
Q psy14299         80 CSFLEQTIQTSLAEKKIPLFVNATAGTTVLGAFDPLDEIATVCEKYD-LWMHVDACWGGSLIFSEKYSFVLKGINRANSV  158 (448)
Q Consensus        80 ~e~Le~~l~~~~~~~~~~~lVv~~~~~t~tG~~~~l~~I~~ia~~~g-~~l~VD~A~~~~~~~~~~~~~~~~~~~~aD~~  158 (448)
                      ++++++++++      ++++|.+..++|++..+.||++|+++||++| ++++||.+++.....-+ ...      ++|++
T Consensus       130 ~~~l~~~l~~------~t~~v~~EspsNP~l~v~Dl~~i~~~a~~~g~~~~vVDnT~atp~~~~p-L~~------GaDiv  196 (386)
T PF01053_consen  130 LEALEAALRP------NTKLVFLESPSNPTLEVPDLEAIAKLAKEHGDILVVVDNTFATPYNQNP-LEL------GADIV  196 (386)
T ss_dssp             HHHHHHHHCT------TEEEEEEESSBTTTTB---HHHHHHHHHHTTT-EEEEECTTTHTTTC-G-GGG------T-SEE
T ss_pred             HHHHHhhccc------cceEEEEEcCCCcccccccHHHHHHHHHHhCCceEEeeccccceeeecc-CcC------CceEE
Confidence            9999999976      5899999999999999999999999999999 99999999887644221 111      48999


Q ss_pred             EECCccccCCCCc--eEEEEEec
Q psy14299        159 SWNPHKMLGAPLQ--CSILLIKE  179 (448)
Q Consensus       159 ~~s~hK~l~~P~g--~G~l~vr~  179 (448)
                      +.|..|.+++...  .|++.+++
T Consensus       197 v~S~TKyl~Ghsdv~~G~vv~~~  219 (386)
T PF01053_consen  197 VHSATKYLSGHSDVMGGAVVVNG  219 (386)
T ss_dssp             EEETTTTTTTSSSE-EEEEEESS
T ss_pred             EeeccccccCCcceeeEEEEECc
Confidence            9999999987653  45555555

Pyridoxal 5'-phosphate (PLP) is a versatile catalyst, acting as a coenzyme in a multitude of reactions, including decarboxylation, deamination and transamination [, , ]. PLP-dependent enzymes are primarily involved in the biosynthesis of amino acids and amino acid-derived metabolites, but they are also found in the biosynthetic pathways of amino sugars and in the synthesis or catabolism of neurotransmitters; pyridoxal phosphate can also inhibit DNA polymerases and several steroid receptors []. Inadequate levels of pyridoxal phosphate in the brain can cause neurological dysfunction, particularly epilepsy []. PLP enzymes exist in their resting state as a Schiff base, the aldehyde group of PLP forming a linkage with the epsilon-amino group of an active site lysine residue on the enzyme. The alpha-amino group of the substrate displaces the lysine epsilon-amino group, in the process forming a new aldimine with the substrate. This aldimine is the common central intermediate for all PLP-catalysed reactions, enzymatic and non-enzymatic []. A number of pyridoxal-dependent enzymes involved in the metabolism of cysteine, homocysteine and methionine have been shown [, ] to be evolutionary related. These enzymes are proteins of about 400 amino-acid residues. The pyridoxal-P group is attached to a lysine residue located in the central section of these enzymes.; GO: 0030170 pyridoxal phosphate binding, 0006520 cellular amino acid metabolic process; PDB: 1PFF_A 2NMP_A 3ELP_B 3COG_C 1CS1_A 1E5E_B 3RI6_A 1E5F_A 2FQ6_B 1CL2_B ....

>PRK09264 diaminobutyrate--2-oxoglutarate aminotransferase; Validated

Probab=99.40  E-value=2.9e-10  Score=117.70  Aligned_cols=162  Identities=22%  Similarity=0.207  Sum_probs=95.9

Q ss_pred             EEE-eCcHHHHHHHHHHHHHHhcCCcccccCCCCCCCeEEEecCCCchHHHHHHHHhCC---------CCCcEEEEecCC
Q psy14299          5 PFL-LPGGSISNMYSICLARYRLDPDTKRKGLSHLPPLCMFTSEDSHYSMLKAAHWLGI---------GMDNVIRVKTNE   74 (448)
Q Consensus         5 g~~-t~ggT~an~~al~~a~~~~~~~~~~~G~~~~~~~~Vl~~~~~H~s~~~~~~~~g~---------~~~~v~~v~~~~   74 (448)
                      .+| +++||+||-.|+..||..-       |    ...+|......|-...-+....+-         ....+..+|.+.
T Consensus       105 ~~f~~~sGseA~e~AlklAr~~t-------g----r~~ii~~~~~yHG~t~~~ls~~~~~~~~~~~~~~~~~~~~~p~~~  173 (425)
T PRK09264        105 VQFTGPTGTNAVEAALKLARKVT-------G----RTNIVAFTNGFHGMTLGSLAVTGNSHKRQGAGVPLNNVTRMPYDG  173 (425)
T ss_pred             EEEeCCCHHHHHHHHHHHHHHhc-------C----CCeEEEECCccCCccHHHHHhcCCcccccCCCCCCCCeEEeCCCC
Confidence            446 5899999999999998751       1    223444455556544433333221         111345555432


Q ss_pred             CC---CcCHHHHHHHHHHhhhcCCCcEEEEEeccCCcccccc----CHHHHHHHHHHcCCEEEEecccccccccccchhh
Q psy14299         75 RG---QMICSFLEQTIQTSLAEKKIPLFVNATAGTTVLGAFD----PLDEIATVCEKYDLWMHVDACWGGSLIFSEKYSF  147 (448)
Q Consensus        75 ~g---~id~e~Le~~l~~~~~~~~~~~lVv~~~~~t~tG~~~----~l~~I~~ia~~~g~~l~VD~A~~~~~~~~~~~~~  147 (448)
                      ..   .-|++++++.+++.......+.+|++.-.....|.+.    .+++|.++|++||+++++|+.|.+.-.....+..
T Consensus       174 ~~~~~~~~~~~l~~~l~~~~~~~~~~aavi~Epv~g~~G~~~~~~~~l~~l~~lc~~~g~llI~DEV~tG~GrtG~~~~~  253 (425)
T PRK09264        174 YFGGDVDTLAYLEKLLEDSSSGVDLPAAVIVETVQGEGGINVASAEWLQRLAKLCRKHDILLIVDDIQAGCGRTGTFFSF  253 (425)
T ss_pred             ccccchhHHHHHHHHHHhccCCCCceEEEEEecccCCCCCcCCCHHHHHHHHHHHHHcCcEEEEechhhCCccccHHHHH
Confidence            11   1267888888865321112456777777777667543    5999999999999999999998742111111111


Q ss_pred             hhcCCCCccEEEECCccccCC-CCceEEEEEecc
Q psy14299        148 VLKGINRANSVSWNPHKMLGA-PLQCSILLIKEK  180 (448)
Q Consensus       148 ~~~~~~~aD~~~~s~hK~l~~-P~g~G~l~vr~~  180 (448)
                      ...++ ..|++++  .|.++. -..+|+++++++
T Consensus       254 ~~~~v-~PDi~t~--~K~l~~~G~pigav~~~~~  284 (425)
T PRK09264        254 ERAGI-TPDIVTL--SKSISGYGLPMALVLIKPE  284 (425)
T ss_pred             hhcCC-CCCEEEe--ccccCCCccceEEEEEchh
Confidence            11223 3687776  498864 234688877654

>PRK05664 threonine-phosphate decarboxylase; Reviewed

Probab=99.39  E-value=2.1e-10  Score=114.70  Aligned_cols=141  Identities=13%  Similarity=0.036  Sum_probs=96.8

Q ss_pred             cEEEeCcHHHHHHHHHHHHHHhcCCcccccCCCCCCCeEEEecCCCchHHHHHHHHhCCCCCcEEEEecCCCCCcCHHHH
Q psy14299          4 KPFLLPGGSISNMYSICLARYRLDPDTKRKGLSHLPPLCMFTSEDSHYSMLKAAHWLGIGMDNVIRVKTNERGQMICSFL   83 (448)
Q Consensus         4 ~g~~t~ggT~an~~al~~a~~~~~~~~~~~G~~~~~~~~Vl~~~~~H~s~~~~~~~~g~~~~~v~~v~~~~~g~id~e~L   83 (448)
                      ..++|+|+++++.+.+.   -             .+++.|+++...+..+...++..|.   +++.+|.+        ++
T Consensus        66 ~I~it~Gs~~al~~~~~---~-------------~~gd~v~v~~P~y~~~~~~~~~~g~---~~~~v~~~--------~~  118 (330)
T PRK05664         66 QLLPVAGSQAAIQALPR---L-------------RAPGRVGVLSPCYAEHAHAWRRAGH---QVRELDEA--------EV  118 (330)
T ss_pred             CEEECcCHHHHHHHHHH---c-------------cCCCEEEEcCCChHHHHHHHHHcCC---eEEEechh--------hH
Confidence            46789999999766532   1             1567799999999999999999999   78777653        45


Q ss_pred             HHHHHHhhhcCCCcEEEEEeccCCccccccC---HHHHHHHHHHcCCEEEEecccccccccccchhhhhcCCCCc-c-EE
Q psy14299         84 EQTIQTSLAEKKIPLFVNATAGTTVLGAFDP---LDEIATVCEKYDLWMHVDACWGGSLIFSEKYSFVLKGINRA-N-SV  158 (448)
Q Consensus        84 e~~l~~~~~~~~~~~lVv~~~~~t~tG~~~~---l~~I~~ia~~~g~~l~VD~A~~~~~~~~~~~~~~~~~~~~a-D-~~  158 (448)
                      ++.++       ++++++++.++|+||.+.+   +++|.++|+++|+++++|.+|....- .+.    +..+..- . ++
T Consensus       119 ~~~~~-------~~~~v~l~nP~NPTG~~~s~~~l~~l~~~~~~~~~~iI~DE~y~~~~~-~~s----~~~~~~~~~vi~  186 (330)
T PRK05664        119 EAALD-------SLDVLVVVNPNNPTGRRFDPARLLAWHARLAARGGWLVVDEAFMDNTP-QHS----LAACAHRPGLIV  186 (330)
T ss_pred             hhhhc-------CCCEEEEeCCcCCCCCccCHHHHHHHHHHHHhcCCEEEEECCcccCCC-ccc----ccccccCCCEEE
Confidence            55553       3568888999999998877   55566667899999999999864321 111    1111111 1 66


Q ss_pred             EECCccccCCC-CceEEEEEeccchhh
Q psy14299        159 SWNPHKMLGAP-LQCSILLIKEKGLLH  184 (448)
Q Consensus       159 ~~s~hK~l~~P-~g~G~l~vr~~~~~~  184 (448)
                      +.|+.|.++.| .-+|+++. ++++..
T Consensus       187 ~~SfSK~~gl~GlRiG~~v~-~~~l~~  212 (330)
T PRK05664        187 LRSFGKFFGLAGARLGFVLA-EPALLR  212 (330)
T ss_pred             EeeccccccCCCcceEEEEe-CHHHHH
Confidence            77899998755 44676665 334433

>KOG2040|consensus

Probab=99.39  E-value=5.2e-11  Score=122.18  Aligned_cols=279  Identities=13%  Similarity=0.125  Sum_probs=174.7

Q ss_pred             CCeEEEecCCCchHHHHHHHHhCCCCCcEEEEecCCCCCcCHHHHHHHHHHhhhcCCCcEEEEEeccCCccccccC-HHH
Q psy14299         39 PPLCMFTSEDSHYSMLKAAHWLGIGMDNVIRVKTNERGQMICSFLEQTIQTSLAEKKIPLFVNATAGTTVLGAFDP-LDE  117 (448)
Q Consensus        39 ~~~~Vl~~~~~H~s~~~~~~~~g~~~~~v~~v~~~~~g~id~e~Le~~l~~~~~~~~~~~lVv~~~~~t~tG~~~~-l~~  117 (448)
                      +..+.+++-.+|-..-..+.+.|+   +++.|.++.+|.+|+.+|+...++..+   .-..++++.++| .|++.+ |++
T Consensus       629 hRnvClIPvSAHGTNPASA~Magm---kvvpV~~~~~G~id~~dLk~kaekh~~---~Laa~MvTYPST-~GvfE~~i~d  701 (1001)
T KOG2040|consen  629 HRNVCLIPVSAHGTNPASAAMAGM---KVVPVGCDANGNIDMVDLKAKAEKHKD---NLAALMVTYPST-HGVFEEGIDD  701 (1001)
T ss_pred             cceeEEEeecccCCChhhHHhcCC---EEEEeeccCCCCccHHHHHHHHHHhhh---hhheeEEecccc-cccccccHHH
Confidence            556788899999999999999999   899999999999999999999887533   345789999999 787754 999


Q ss_pred             HHHHHHHcCCEEEEecccccccc-cccchhhhhcCCCCccEEEECCccccCCCCceEE-----EEEeccchhhhhccCCc
Q psy14299        118 IATVCEKYDLWMHVDACWGGSLI-FSEKYSFVLKGINRANSVSWNPHKMLGAPLQCSI-----LLIKEKGLLHQANATAA  191 (448)
Q Consensus       118 I~~ia~~~g~~l~VD~A~~~~~~-~~~~~~~~~~~~~~aD~~~~s~hK~l~~P~g~G~-----l~vr~~~~~~~~~~~~~  191 (448)
                      ++++.|+||..+..|||---... .+.      .|--++|+...+.||.+..|.|.|.     +.++..  +...++..+
T Consensus       702 ~cd~iHehGGQVYlDGANMNAqVGlc~------pGd~GaDV~HLNLHKTFcIPHGGGGPg~gPIgVK~H--LapfLP~Hp  773 (1001)
T KOG2040|consen  702 ICDIIHEHGGQVYLDGANMNAQVGLCR------PGDIGADVCHLNLHKTFCIPHGGGGPGMGPIGVKKH--LAPFLPSHP  773 (1001)
T ss_pred             HHHHHHhcCCEEEecCCCccceecccC------CccccccceeecccceeeecCCCCCCCCCccchhhh--ccccCCCCC
Confidence            99999999999999997432211 111      0111589999999999887765553     333321  222222211


Q ss_pred             ccccccCcccccccCCCCCcccCCCCc---hhHH-HHHHHHHhChHHHHHHHHHhhhhccCCCccchhhhhhhhhhhhhh
Q psy14299        192 TYLFQQDKFYDVSFDTGDKSVQCGRKV---DAFK-LWLMWKARGNLGFRHFVDNAVDCSRGSMTFSTLLCFDLQGLLHQA  267 (448)
Q Consensus       192 ~y~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~-~~~~~~~~g~~g~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~  267 (448)
                       .+.... ..+.    ...+--.+.++   ..++ .|+.++.+|..|++                               
T Consensus       774 -Vvs~~~-~~~~----~~~gsVsaaP~Gsa~ILpISwaYikmMG~~GL~-------------------------------  816 (1001)
T KOG2040|consen  774 -VVSPGR-PEDT----SPVGSVSAAPWGSALILPISWAYIKMMGSGGLK-------------------------------  816 (1001)
T ss_pred             -ccCCCC-CCCC----CCccceeccCCCcceeehhHHHHHHHhcccccc-------------------------------
Confidence             111000 0000    00000011111   1122 44445555555544                               


Q ss_pred             hhhhhhhhhccccccccccCCCCCccccccchhhHHHHHHHHHhcCccHHHHHHHHHHHHHHHHHHhhcCCCeEEeccCC
Q psy14299        268 NATAATYLFQQDKFYDVSFDTGDKSVQCGRKVDAFKLWLMWKARGNLGFRHFVDNAVDCSRYFLSQISQRPGFRLVIPEF  347 (448)
Q Consensus       268 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~~l~~~~~~~L~~~pg~~l~~~~~  347 (448)
                                                                        .--+...-+++|+.++|+++  ++++...+
T Consensus       817 --------------------------------------------------~as~~AiLNaNYMakRLe~h--Ykil~~~~  844 (1001)
T KOG2040|consen  817 --------------------------------------------------DASKIAILNANYMAKRLESH--YKILFRGE  844 (1001)
T ss_pred             --------------------------------------------------hhhHHHhhhhHHHHHHHhhc--cceeEecC
Confidence                                                              44444556799999999987  55552211


Q ss_pred             c---eeeEEEEeeccCCCccccchhhhhhhhhhhHHHHHHHHhCCcEEEEeeecCCcccccEEEEEecCCCCCCHHHHHH
Q psy14299        348 Q---CTNICFWFIPVSLRDKVEDETWWSTLSKVAPRIKEKLVLGGTLMIGYQPLQHRNLHNFFRLVTTCHPASSRQDMDY  424 (448)
Q Consensus       348 ~---~~~v~f~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~L~~~g~~~~~~~~~~g~~~~~~lRis~~~~~~~t~edid~  424 (448)
                      .   ...+.+..+|  .+         ...+--.-.+.++|.+.| +......|.-.   +++=|-+  ...-+++|+||
T Consensus       845 ~~~vaHEFIlD~r~--fK---------~~agieavDvAKRL~DYg-FHaPTmswPV~---gtLMIEP--TESE~k~ElDR  907 (1001)
T KOG2040|consen  845 NGLVAHEFILDLRP--FK---------KTAGIEAVDVAKRLMDYG-FHAPTMSWPVA---GTLMIEP--TESEDKAELDR  907 (1001)
T ss_pred             Ccceeeeeeeechh--hc---------cccCCcHHHHHHHHHhcc-CCCCccccccC---CceEecc--CccccHHHHHH
Confidence            1   2222332222  21         111112347889999998 44443334333   6788888  46788899999


Q ss_pred             HHHHHHHHHHHhHH
Q psy14299        425 AIDQIELRGAEVDL  438 (448)
Q Consensus       425 l~~al~~~~~~~~~  438 (448)
                      +.+++-.+.+++..
T Consensus       908 fcdAliSIreEI~~  921 (1001)
T KOG2040|consen  908 FCDALISIREEIAQ  921 (1001)
T ss_pred             HHHHHHHHHHHHHH
Confidence            99999998877653

>COG0001 HemL Glutamate-1-semialdehyde aminotransferase [Coenzyme metabolism]

Probab=99.39  E-value=1.7e-10  Score=115.98  Aligned_cols=158  Identities=15%  Similarity=0.069  Sum_probs=107.7

Q ss_pred             EEEeCcHHHHHHHHHHHHHHhcCCcccccCCCCCCCeEEEecCCCchHHHHHHHHhC-------------CC---CCcEE
Q psy14299          5 PFLLPGGSISNMYSICLARYRLDPDTKRKGLSHLPPLCMFTSEDSHYSMLKAAHWLG-------------IG---MDNVI   68 (448)
Q Consensus         5 g~~t~ggT~an~~al~~a~~~~~~~~~~~G~~~~~~~~Vl~~~~~H~s~~~~~~~~g-------------~~---~~~v~   68 (448)
                      +-|+++||||++.|+..||..-           ..+.+|.+.-..|-+.....--.|             +.   ...++
T Consensus       112 vrfvnSGTEAtmsAiRlARa~T-----------gR~kIikF~G~YHG~~D~~lv~agsg~~t~g~p~s~Gvp~~~a~~ti  180 (432)
T COG0001         112 VRFVNSGTEATMSAIRLARAYT-----------GRDKIIKFEGCYHGHSDSLLVKAGSGAATLGSPSSPGVPADVAKHTL  180 (432)
T ss_pred             EEEecchhHHHHHHHHHHHHhh-----------CCCeEEEEcCCCCCCccHHHhhcCcCcccCCCCCCCCCChhhhccEE
Confidence            4699999999999999999763           234456666667765544433222             10   12466


Q ss_pred             EEecCCCCCcCHHHHHHHHHHhhhcCCCcEEEEEeccCCccccccC----HHHHHHHHHHcCCEEEEecccccccccccc
Q psy14299         69 RVKTNERGQMICSFLEQTIQTSLAEKKIPLFVNATAGTTVLGAFDP----LDEIATVCEKYDLWMHVDACWGGSLIFSEK  144 (448)
Q Consensus        69 ~v~~~~~g~id~e~Le~~l~~~~~~~~~~~lVv~~~~~t~tG~~~~----l~~I~~ia~~~g~~l~VD~A~~~~~~~~~~  144 (448)
                      .+|.+     |++.+++++++.   +.....|++.-.-.+-|.+.|    +++|.++|++||+.|+.|+...+.-....-
T Consensus       181 ~~~yN-----D~~al~~~~~~~---g~~IAaVIvEPv~gn~g~i~p~~~Fl~~Lr~lt~e~G~lLI~DEViTGFR~~~gG  252 (432)
T COG0001         181 VLPYN-----DLEALEEAFEEY---GDDIAAVIVEPVAGNMGVVPPEPGFLEGLRELTEEHGALLIFDEVITGFRVALGG  252 (432)
T ss_pred             EecCC-----CHHHHHHHHHHc---CCcEEEEEeccccCCCCCCCCCHHHHHHHHHHHHHcCcEEEEecchhhcccCCcc
Confidence            77777     999999999873   335667888777777888876    788999999999999999977654432111


Q ss_pred             hhhhhcCCCCccEEEECCccccCCCCceEEEEEeccchhhhh
Q psy14299        145 YSFVLKGINRANSVSWNPHKMLGAPLQCSILLIKEKGLLHQA  186 (448)
Q Consensus       145 ~~~~~~~~~~aD~~~~s~hK~l~~P~g~G~l~vr~~~~~~~~  186 (448)
                      ... ..++ ..|..+  .-|.+++-..+|.+-.|+ +++...
T Consensus       253 aq~-~~gi-~PDltt--lGKiIGGGlP~ga~gGr~-eiM~~~  289 (432)
T COG0001         253 AQG-YYGV-EPDLTT--LGKIIGGGLPIGAFGGRA-EIMEQL  289 (432)
T ss_pred             ccc-ccCc-Ccchhh--hhhhhcCCcceeeeccHH-HHHhhh
Confidence            111 1123 256655  479888888888877655 455543

>PTZ00376 aspartate aminotransferase; Provisional

Probab=99.39  E-value=2.3e-10  Score=117.71  Aligned_cols=153  Identities=13%  Similarity=0.067  Sum_probs=108.0

Q ss_pred             EeCcHHHHHHHHHHHHHHhcCCcccccCCCCCCCeEEEecCCCchHHHHHHHHhCCCCCcEEEEecC--CCCCcCHHHHH
Q psy14299          7 LLPGGSISNMYSICLARYRLDPDTKRKGLSHLPPLCMFTSEDSHYSMLKAAHWLGIGMDNVIRVKTN--ERGQMICSFLE   84 (448)
Q Consensus         7 ~t~ggT~an~~al~~a~~~~~~~~~~~G~~~~~~~~Vl~~~~~H~s~~~~~~~~g~~~~~v~~v~~~--~~g~id~e~Le   84 (448)
                      .|+||+.|...++.+.+.-.           .+++.|++++..+..+...++..|.   +++.+|..  +++.+|++.++
T Consensus       102 ~t~G~~~al~~~~~~l~~~~-----------~~Gd~Vlv~~P~y~~~~~~~~~~G~---~~~~v~l~~~~~~~~d~~~l~  167 (404)
T PTZ00376        102 QALSGTGALRLGFEFLKRFL-----------PAGTTVYVSNPTWPNHVNIFKSAGL---NVKEYRYYDPKTKGLDFDGML  167 (404)
T ss_pred             eccCcchHHHHHHHHHHHhc-----------CCCCEEEEcCCCchhHHHHHHHcCC---ceeeccccCcccCCcCHHHHH
Confidence            48899999776665433221           2678899999999999999999999   78889873  35789999999


Q ss_pred             HHHHHhhhcCCCcEEEEEeccCCccccccC---HHHHHHHHHHcCCEEEEecccccccccc---cchh-hhhcCCCCccE
Q psy14299         85 QTIQTSLAEKKIPLFVNATAGTTVLGAFDP---LDEIATVCEKYDLWMHVDACWGGSLIFS---EKYS-FVLKGINRANS  157 (448)
Q Consensus        85 ~~l~~~~~~~~~~~lVv~~~~~t~tG~~~~---l~~I~~ia~~~g~~l~VD~A~~~~~~~~---~~~~-~~~~~~~~aD~  157 (448)
                      +.+++.   ..+++++++..++|+||...+   +++|+++|++||+++++|.+|.......   +... ..+.....-=+
T Consensus       168 ~~~~~~---~~~~~~~~~~~p~NPTG~~~s~~~~~~l~~~a~~~~~~ii~De~Y~~~~~~~~~~~~~~~~~~~~~~~~vi  244 (404)
T PTZ00376        168 EDLRTA---PNGSVVLLHACAHNPTGVDPTEEQWKEIADVMKRKNLIPFFDMAYQGFASGDLDKDAYAIRLFAERGVEFL  244 (404)
T ss_pred             HHHHhC---CCCCEEEEeCCCCCCCCCCCCHHHHHHHHHHHHhCCcEEEEehhhcCccCCCHHHHHHHHHHHHhcCCcEE
Confidence            998642   123567888999999998755   6778889999999999999987544311   0000 00111100115


Q ss_pred             EEECCccccCCC-CceEEEE
Q psy14299        158 VSWNPHKMLGAP-LQCSILL  176 (448)
Q Consensus       158 ~~~s~hK~l~~P-~g~G~l~  176 (448)
                      ++.|+.|.++.| .-+|+++
T Consensus       245 ~i~SfSK~~~~~GlRvG~~~  264 (404)
T PTZ00376        245 VAQSFSKNMGLYGERIGALH  264 (404)
T ss_pred             EEEeCCCcccccccccceEE
Confidence            667889998855 4467663

>PRK07049 methionine gamma-lyase; Validated

Probab=99.39  E-value=2.7e-10  Score=117.81  Aligned_cols=138  Identities=9%  Similarity=0.070  Sum_probs=101.1

Q ss_pred             cEEEeCcHHHHHHHHHHHHHHhcCCcccccCCCCCCCeEEEecCCCchHHHHHH----HHhCCCCCcEEEEecCCCCCcC
Q psy14299          4 KPFLLPGGSISNMYSICLARYRLDPDTKRKGLSHLPPLCMFTSEDSHYSMLKAA----HWLGIGMDNVIRVKTNERGQMI   79 (448)
Q Consensus         4 ~g~~t~ggT~an~~al~~a~~~~~~~~~~~G~~~~~~~~Vl~~~~~H~s~~~~~----~~~g~~~~~v~~v~~~~~g~id   79 (448)
                      ..++++||+.++..++.+..+              +++.|+++...+......+    +..|+   +++.++.    ..|
T Consensus       100 ~~iv~~sG~~Ai~~~l~al~~--------------~Gd~Vv~~~p~Y~~~~~~~~~~l~~~Gi---~~v~~~~----~~d  158 (427)
T PRK07049        100 SAALFSSGMSAIATTLLAFVR--------------PGDVILHSQPLYGGTETLLAKTFRNFGV---GAVGFAD----GLS  158 (427)
T ss_pred             cEEEEccHHHHHHHHHHHHhC--------------CCCEEEEcCCCcccHHHHHHHHHHhcCc---EEEEEeC----CCC
Confidence            578899999998777766554              5667888887777665543    34465   5555552    257


Q ss_pred             HHHHHHHHHHhhhcCCCcEEEEEeccCCccccccCHHHHHHHHHH------cCCEEEEecccccccccccchhhhhcCCC
Q psy14299         80 CSFLEQTIQTSLAEKKIPLFVNATAGTTVLGAFDPLDEIATVCEK------YDLWMHVDACWGGSLIFSEKYSFVLKGIN  153 (448)
Q Consensus        80 ~e~Le~~l~~~~~~~~~~~lVv~~~~~t~tG~~~~l~~I~~ia~~------~g~~l~VD~A~~~~~~~~~~~~~~~~~~~  153 (448)
                      ++++++.+++.... .++++|.+..++|++|.+.|+++|.++++.      ++++++||.++.......+     +.  .
T Consensus       159 ~~~l~~~l~~~~~~-~~tklv~lesP~NPtg~v~d~~~l~~la~~~~~~~~~~~~vvvDety~~~~~~~p-----l~--~  230 (427)
T PRK07049        159 EAAIGAAAEAAAAK-GRVSLILIETPANPTNSLVDVAAVRRVADAIEARQGHRPIIACDNTLLGPVFQKP-----LE--H  230 (427)
T ss_pred             HHHHHHHHHhhccC-CCceEEEEECCCCCCCcccCHHHHHHHHHHhhhcccCCCEEEEECCccccccCCc-----cc--c
Confidence            88898888653221 358899999999999999999999999988      8999999999764432111     11  1


Q ss_pred             CccEEEECCccccCCCC
Q psy14299        154 RANSVSWNPHKMLGAPL  170 (448)
Q Consensus       154 ~aD~~~~s~hK~l~~P~  170 (448)
                      ++|+++.|+.|.++++.
T Consensus       231 g~divv~S~SK~~gG~~  247 (427)
T PRK07049        231 GADLSVYSLTKYVGGHS  247 (427)
T ss_pred             CCCEEEEcCceeecCCC
Confidence            47999999999999643

>PRK05839 hypothetical protein; Provisional

Probab=99.39  E-value=1.7e-10  Score=117.39  Aligned_cols=110  Identities=12%  Similarity=-0.078  Sum_probs=83.4

Q ss_pred             EEEeCcHHHHHHHHHHHHHHhcCCcccccCCCCCCCeEEEecCCCchHHHHHHHHhCCCCCcEEEEecCCC--CCcCHHH
Q psy14299          5 PFLLPGGSISNMYSICLARYRLDPDTKRKGLSHLPPLCMFTSEDSHYSMLKAAHWLGIGMDNVIRVKTNER--GQMICSF   82 (448)
Q Consensus         5 g~~t~ggT~an~~al~~a~~~~~~~~~~~G~~~~~~~~Vl~~~~~H~s~~~~~~~~g~~~~~v~~v~~~~~--g~id~e~   82 (448)
                      .++|+|+++++...+.+....            .+++.|+++...+..+...++..|+   +++.++.+++  +.+|.++
T Consensus        86 I~it~G~~~al~~~~~~~~~~------------~~gd~vlv~~P~y~~~~~~~~~~g~---~v~~v~~~~~~~~~~d~~~  150 (374)
T PRK05839         86 LIPTFGTREVLFNFPQFVLFD------------KQNPTIAYPNPFYQIYEGAAIASRA---KVLLMPLTKENDFTPSLNE  150 (374)
T ss_pred             EEEecCcHHHHHHHHHHHhcC------------CCCCEEEECCCCchhhHHHHHhcCC---EEEEeecccccCCcCCcch
Confidence            678888888876665544321            1466788898999999999999898   7999998754  3444433


Q ss_pred             HHHHHHHhhhcCCCcEEEEEeccCCccccccC---HHHHHHHHHHcCCEEEEecccccc
Q psy14299         83 LEQTIQTSLAEKKIPLFVNATAGTTVLGAFDP---LDEIATVCEKYDLWMHVDACWGGS  138 (448)
Q Consensus        83 Le~~l~~~~~~~~~~~lVv~~~~~t~tG~~~~---l~~I~~ia~~~g~~l~VD~A~~~~  138 (448)
                      .  .++       ++++|+++.++|+||.+.+   +++|.++|++||+++++|.+|+-.
T Consensus       151 ~--~~~-------~~k~v~i~nP~NPTG~~~s~~~l~~i~~~~~~~~~~ii~DE~Y~~~  200 (374)
T PRK05839        151 K--ELQ-------EVDLVILNSPNNPTGRTLSLEELIEWVKLALKHDFILINDECYSEI  200 (374)
T ss_pred             h--hhc-------cccEEEEeCCCCCcCcccCHHHHHHHHHHHHHcCCEEEeccchhhc
Confidence            2  221       3789999999999998766   667778899999999999998753

>PRK12566 glycine dehydrogenase; Provisional

Probab=99.38  E-value=5.5e-11  Score=130.11  Aligned_cols=261  Identities=11%  Similarity=0.065  Sum_probs=170.0

Q ss_pred             eEEEecCCCchHHHHHHHHh--CCCCCcEEEEecCCCCCcCHHHHHHHHHHhhhcCCCcEEEEEeccCCccccccCHHHH
Q psy14299         41 LCMFTSEDSHYSMLKAAHWL--GIGMDNVIRVKTNERGQMICSFLEQTIQTSLAEKKIPLFVNATAGTTVLGAFDPLDEI  118 (448)
Q Consensus        41 ~~Vl~~~~~H~s~~~~~~~~--g~~~~~v~~v~~~~~g~id~e~Le~~l~~~~~~~~~~~lVv~~~~~t~tG~~~~l~~I  118 (448)
                      ..|++++..|+......+-.  +.+. +++.           +++++.+++      .+..|++..+++ .|.+.|+++|
T Consensus       169 ~~~~v~~~~hP~~~~v~~t~~~~~g~-~i~~-----------~~~~~~~~~------~~~~v~vq~P~~-~G~i~d~~~i  229 (954)
T PRK12566        169 NRFFVDEHCHPQTLSVLRTRAEGFGF-ELVV-----------DAVDNLAAH------AVFGALLQYPDT-HGEIRDLRPL  229 (954)
T ss_pred             CEEEECCCCCHHHHHHHHHhhhcCCc-EEEE-----------cchhhcCCC------CEEEEEEECCCC-ceEEccHHHH
Confidence            45899999999877766522  2211 3332           334444322      366788888776 9999999999


Q ss_pred             HHHHHHcCCEEEEecccccccccccchhhhhcCCCCccEEEECCcc-----ccCCCCceEEEEEeccchhhhhccCCccc
Q psy14299        119 ATVCEKYDLWMHVDACWGGSLIFSEKYSFVLKGINRANSVSWNPHK-----MLGAPLQCSILLIKEKGLLHQANATAATY  193 (448)
Q Consensus       119 ~~ia~~~g~~l~VD~A~~~~~~~~~~~~~~~~~~~~aD~~~~s~hK-----~l~~P~g~G~l~vr~~~~~~~~~~~~~~y  193 (448)
                      .+++|++|+.++ +++--........ +    |--++|+++.+++-     .+|+| ..|+|.++++ +.+    ..|+-
T Consensus       230 ~~~~h~~gal~~-~~~d~laL~ll~~-P----ge~GADI~vG~~Q~fGvp~~~GGP-~ag~~a~~~~-~~R----~~PGR  297 (954)
T PRK12566        230 IDQLHGQQALAC-VAADLLSLLVLTP-P----GELGADVVLGSTQRFGVPMGYGGP-HAAYFACRDD-YKR----AMPGR  297 (954)
T ss_pred             HHHHHHcCCEEE-EEeCHHHHhCCCC-h----hhcCCcEEeeCCCcCCCCCCCCCC-CeeeeeehHH-HHh----hCCCC
Confidence            999999999855 4432221111110 0    11258999766553     33444 3677888764 222    23444


Q ss_pred             ccccCcccccccCCCCCcccCCCCchhHHHHHHHHHhChHHHHH---HHHHhhhhccCCCccchhhhhhhhhhhhhhhhh
Q psy14299        194 LFQQDKFYDVSFDTGDKSVQCGRKVDAFKLWLMWKARGNLGFRH---FVDNAVDCSRGSMTFSTLLCFDLQGLLHQANAT  270 (448)
Q Consensus       194 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~g~~~---~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  270 (448)
                      +-..+...            .                |..+++-   .=++++++.|+.|+|||             |++
T Consensus       298 ivG~s~D~------------~----------------G~~a~~l~LqtREQHIRReKAtSNICT-------------~qa  336 (954)
T PRK12566        298 IIGVSRDA------------R----------------GNTALRMALQTREQHIRREKANSNICT-------------AQV  336 (954)
T ss_pred             ccceeecC------------C----------------CCeeeehhhhHHHHHhhhccccchhhH-------------HHH
Confidence            43322110            1                1112221   12678899999999999             444


Q ss_pred             hhhhhhccccccccccCCCCCccccccchhhHHHHHHHHHhcCccHHHHHHHHHHHHHHHHHHhhcCCCeEEeccCCcee
Q psy14299        271 AATYLFQQDKFYDVSFDTGDKSVQCGRKVDAFKLWLMWKARGNLGFRHFVDNAVDCSRYFLSQISQRPGFRLVIPEFQCT  350 (448)
Q Consensus       271 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~~l~~~~~~~L~~~pg~~l~~~~~~~~  350 (448)
                      .+                            ++.....+.+.|.+|++++.++.+.++.|+.+.|.+ +|+++. .++.+.
T Consensus       337 L~----------------------------A~~a~~Y~~~~Gp~Gl~~ia~~~~~~a~~l~~~l~~-~g~~~~-~~~fF~  386 (954)
T PRK12566        337 LL----------------------------ANIAGFYAVYHGPEGLKRIAQRVHRLTAILAAGLEA-KGIKRL-NRHFFD  386 (954)
T ss_pred             HH----------------------------HHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHHHh-cCCccc-cCCccc
Confidence            33                            666777888999999999999999999999999999 699987 566677


Q ss_pred             eEEEEeeccCCCccccchhhhhhhhhhhHHHHHHHHhCCcEEEEeeecCCcccccEEEEEecCCCCCCHHHHHHHHHHHH
Q psy14299        351 NICFWFIPVSLRDKVEDETWWSTLSKVAPRIKEKLVLGGTLMIGYQPLQHRNLHNFFRLVTTCHPASSRQDMDYAIDQIE  430 (448)
Q Consensus       351 ~v~f~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~L~~~g~~~~~~~~~~g~~~~~~lRis~~~~~~~t~edid~l~~al~  430 (448)
                      .+.+.+ ..  .               ..++.++..+.|+-+ .  ....    +.+.+|+  ...+|.+|++.|++++.
T Consensus       387 ~~~v~~-~~--~---------------~~~~~~~a~~~~~n~-r--~~~~----~~~~~s~--de~~~~~~~~~~~~~f~  439 (954)
T PRK12566        387 TLTLEV-GG--A---------------QAAIIESAEAARINL-R--ILGR----GRLGVSL--DETCDEATVARLFDIFL  439 (954)
T ss_pred             eEEEEc-cC--C---------------HHHHHHHHHHCCCee-E--EeCC----CeEEEEe--CCCCCHHHHHHHHHHhc
Confidence            777754 10  0               236777777777322 2  1222    4789999  68999999999999995

>COG4992 ArgD Ornithine/acetylornithine aminotransferase [Amino acid transport and metabolism]

Probab=99.36  E-value=2.9e-10  Score=113.18  Aligned_cols=153  Identities=18%  Similarity=0.178  Sum_probs=101.0

Q ss_pred             cEEEeCcHHHHHHHHHHHHHHhcCCcccccCCCCCCCeEEEecCCCchHHHHHHHHhC-------CC--CCcEEEEecCC
Q psy14299          4 KPFLLPGGSISNMYSICLARYRLDPDTKRKGLSHLPPLCMFTSEDSHYSMLKAAHWLG-------IG--MDNVIRVKTNE   74 (448)
Q Consensus         4 ~g~~t~ggT~an~~al~~a~~~~~~~~~~~G~~~~~~~~Vl~~~~~H~s~~~~~~~~g-------~~--~~~v~~v~~~~   74 (448)
                      -++|+++|||||=.|+..||.+..      + + .....|.+...-|--..-+....+       ..  ...+..+|.+ 
T Consensus       102 ~vff~NSGaEA~EaAiKlARk~~~------~-~-~k~~Iia~~nsFHGRT~galS~t~~~ky~~~F~Pl~~g~~~vpfn-  172 (404)
T COG4992         102 RVFFCNSGAEANEAALKLARKYTG------D-P-EKSKIIAFENSFHGRTLGALSATGQPKYRKGFGPLLPGFRHVPFN-  172 (404)
T ss_pred             EEEEcCCcHHHHHHHHHHHHHHcC------C-C-CCcEEEEEcCCcCCccceeeeccCChhhccCCCCCCCCceecCCC-
Confidence            378999999999999999998742      0 0 112334444444432111111111       10  1136667766 


Q ss_pred             CCCcCHHHHHHHHHHhhhcCCCcEEEEEeccCCccccccC----HHHHHHHHHHcCCEEEEecccccccccccchhhhhc
Q psy14299         75 RGQMICSFLEQTIQTSLAEKKIPLFVNATAGTTVLGAFDP----LDEIATVCEKYDLWMHVDACWGGSLIFSEKYSFVLK  150 (448)
Q Consensus        75 ~g~id~e~Le~~l~~~~~~~~~~~lVv~~~~~t~tG~~~~----l~~I~~ia~~~g~~l~VD~A~~~~~~~~~~~~~~~~  150 (448)
                          |++++++++++      .+..|++.-..-..|++-|    ++++.++|++||+++++|..|.+---...-+...-.
T Consensus       173 ----Di~al~~ai~~------~taAvivEPIQGEgGV~~~~~~fl~~lr~lCd~~g~LLI~DEVQtG~GRTGk~fA~e~~  242 (404)
T COG4992         173 ----DIEALEAAIDE------DTAAVIVEPIQGEGGVIPAPPEFLKALRELCDEHGALLILDEVQTGLGRTGKLFAYEHY  242 (404)
T ss_pred             ----CHHHHHHHhcc------CeEEEEEecccCCCCCCCCCHHHHHHHHHHHHHhCeEEEEeccccCCCccchHHHHHHh
Confidence                99999999976      4778888888887887755    888999999999999999998863221111111111


Q ss_pred             CCCCccEEEECCccccCCCCceEEEEEe
Q psy14299        151 GINRANSVSWNPHKMLGAPLQCSILLIK  178 (448)
Q Consensus       151 ~~~~aD~~~~s~hK~l~~P~g~G~l~vr  178 (448)
                      ++ ..|++++  -|.|++-..+|.++.+
T Consensus       243 gV-~PDI~tl--aK~LgGG~PigA~la~  267 (404)
T COG4992         243 GV-EPDILTL--AKALGGGFPIGAMLAT  267 (404)
T ss_pred             CC-CCCEEEe--eccccCCccceeeEEc
Confidence            33 2577775  7988887888998886

>PRK05769 4-aminobutyrate aminotransferase; Provisional

Probab=99.36  E-value=6.9e-10  Score=115.30  Aligned_cols=163  Identities=17%  Similarity=0.172  Sum_probs=95.5

Q ss_pred             cEEEeCcHHHHHHHHHHHHHHhcCCcccccCCCCCCCeEEEecCCCchHHHHHHHHhCCC----------CCcEEEEecC
Q psy14299          4 KPFLLPGGSISNMYSICLARYRLDPDTKRKGLSHLPPLCMFTSEDSHYSMLKAAHWLGIG----------MDNVIRVKTN   73 (448)
Q Consensus         4 ~g~~t~ggT~an~~al~~a~~~~~~~~~~~G~~~~~~~~Vl~~~~~H~s~~~~~~~~g~~----------~~~v~~v~~~   73 (448)
                      .++|+++||+||-.|+..||..-       |    ...+|-.....|-...-+....+..          ...+..+|.+
T Consensus       117 ~v~f~~SGsEA~e~AlklAr~~t-------g----r~~Ii~~~~~yHG~t~~~ls~t~~~~~~~~~~~~~~~~~~~~~~~  185 (441)
T PRK05769        117 KVFFTNSGTESNEAAIKIARYHT-------G----RKYIIAFLGAFHGRTYGSLSLTASKPVQRKGFFPLMPGVIHVPYP  185 (441)
T ss_pred             EEEECCchHHHHHHHHHHHHHHh-------C----CCeEEEECCCcCCccHHHHHhcCCCcccccCCCCCCCCeEEeCCC
Confidence            57899999999999999999752       1    2334444555665544444432210          0123444432


Q ss_pred             CCCC-----cC--------HHHHHHHHHHhhhcCCCcEEEEEeccCCccccccC----HHHHHHHHHHcCCEEEEecccc
Q psy14299         74 ERGQ-----MI--------CSFLEQTIQTSLAEKKIPLFVNATAGTTVLGAFDP----LDEIATVCEKYDLWMHVDACWG  136 (448)
Q Consensus        74 ~~g~-----id--------~e~Le~~l~~~~~~~~~~~lVv~~~~~t~tG~~~~----l~~I~~ia~~~g~~l~VD~A~~  136 (448)
                      ...+     -|        .+.+++.+-+....+..+.+|++.-.....|.+.|    +++|.++|++||+++++|.++.
T Consensus       186 ~~~~~~~~~~~~~~~~~~~~~~le~~~~~~~~~~~~iaavi~Epv~g~~G~~~~~~~~l~~l~~l~~~~g~lli~DEv~t  265 (441)
T PRK05769        186 NPYRNPWGIENPEECGNAVLDFIEDYLFKKLVPPEEVAAIIVEPIQGEGGYVVPPKNFFKELRKLADKYGILLIDDEVQT  265 (441)
T ss_pred             ccccccccCCchHHHHHHHHHHHHHHHHhhccCCCceEEEEECcccCCCCCcCCCHHHHHHHHHHHHHcCCEEEEechhh
Confidence            2111     11        23344422211011235667777777777888888    9999999999999999999987


Q ss_pred             cccccccchhhhhcCCCCccEEEECCccccCCCCceEEEEEecc
Q psy14299        137 GSLIFSEKYSFVLKGINRANSVSWNPHKMLGAPLQCSILLIKEK  180 (448)
Q Consensus       137 ~~~~~~~~~~~~~~~~~~aD~~~~s~hK~l~~P~g~G~l~vr~~  180 (448)
                      +.-.....+.....++ ..|.+++  .|.+++-...|.+..+++
T Consensus       266 G~gr~G~~~a~~~~gv-~pDivt~--~K~l~~G~p~gav~~~~~  306 (441)
T PRK05769        266 GMGRTGKMFAIEHFGV-EPDIITL--AKAIAGGLPLGAVIGRAE  306 (441)
T ss_pred             CCCcccceehhhccCC-CCCEEEE--cccccCCcccEEEEEehh
Confidence            4211111011111133 2588875  487775555777777654

>TIGR02407 ectoine_ectB diaminobutyrate--2-oxoglutarate aminotransferase

Probab=99.36  E-value=4.6e-10  Score=115.67  Aligned_cols=162  Identities=21%  Similarity=0.216  Sum_probs=95.0

Q ss_pred             EEE-eCcHHHHHHHHHHHHHHhcCCcccccCCCCCCCeEEEecCCCchHHHHHHHHhCC-------C--CCcEEEEecCC
Q psy14299          5 PFL-LPGGSISNMYSICLARYRLDPDTKRKGLSHLPPLCMFTSEDSHYSMLKAAHWLGI-------G--MDNVIRVKTNE   74 (448)
Q Consensus         5 g~~-t~ggT~an~~al~~a~~~~~~~~~~~G~~~~~~~~Vl~~~~~H~s~~~~~~~~g~-------~--~~~v~~v~~~~   74 (448)
                      .+| +++||+||-.|+..||...       |    ...+|-.....|-...-+....+.       +  ...+..+|.+.
T Consensus       101 ~~f~~~sGseA~e~AlklAr~~t-------g----r~~ii~~~~~yHG~t~~als~~~~~~~~~~~~~~~~~~~~~p~~~  169 (412)
T TIGR02407       101 VQFPGPTGTNAVESALKLARKVT-------G----RSNVVSFTNAFHGMTLGSLSVTGNRFKRQGAGVPLSNVSRMPYDG  169 (412)
T ss_pred             EEEeCCCchHHHHHHHHHHhhhc-------C----CCeEEEECCCcCCchHHHHHhcCCcccccCCCCCCCCeEECCCCC
Confidence            455 5899999999999998751       1    223444455566554444443321       0  11234444321


Q ss_pred             CCC---cCHHHHHHHHHHhhhcCCCcEEEEEeccCCccccc----cCHHHHHHHHHHcCCEEEEecccccccccccchhh
Q psy14299         75 RGQ---MICSFLEQTIQTSLAEKKIPLFVNATAGTTVLGAF----DPLDEIATVCEKYDLWMHVDACWGGSLIFSEKYSF  147 (448)
Q Consensus        75 ~g~---id~e~Le~~l~~~~~~~~~~~lVv~~~~~t~tG~~----~~l~~I~~ia~~~g~~l~VD~A~~~~~~~~~~~~~  147 (448)
                      ...   -+++.+++.+++.......+.+|++.-...+.|.+    .-+++|.++|++||+++++|+.+.+.-.....+..
T Consensus       170 ~~~~~~~~~~~l~~~~~~~~~~~~~~aavi~Epi~g~~G~~~~~~~~l~~l~~lc~~~g~llI~DEV~tG~GRtG~~~a~  249 (412)
T TIGR02407       170 YLGGDVDTIAYFEKLLEDSSSGVDLPAAVILETVQGEGGINVASDEWLQRLEKLCRRHDILLIVDDIQAGCGRTGTFFSF  249 (412)
T ss_pred             ccccchhHHHHHHHHHHhccCCCCceEEEEeccccCCCCCccCCHHHHHHHHHHHHHcCCEEEEechhhCCCccchhHHh
Confidence            111   24677888885421111245677776666667764    33899999999999999999998632111100011


Q ss_pred             hhcCCCCccEEEECCccccCC-CCceEEEEEecc
Q psy14299        148 VLKGINRANSVSWNPHKMLGA-PLQCSILLIKEK  180 (448)
Q Consensus       148 ~~~~~~~aD~~~~s~hK~l~~-P~g~G~l~vr~~  180 (448)
                      ...++ ..|.++++  |++++ -..+|+++++++
T Consensus       250 ~~~~v-~PDi~~~~--K~lg~~G~pigav~~~~~  280 (412)
T TIGR02407       250 EPAGI-EPDIVCLS--KSISGYGLPLALTLIKPE  280 (412)
T ss_pred             cccCC-CCCEEEec--hhccCCccceeEEEEchh
Confidence            11233 36887764  99874 455888888654

Members of this family of class III pyridoxal-phosphate-dependent aminotransferases are diaminobutyrate--2-oxoglutarate aminotransferase (EC 2.6.1.76) that catalyze the first step in ectoine biosynthesis from L-aspartate beta-semialdehyde. This family is readily separated phylogenetically from enzymes with the same substrate and product but involved in other process such as siderophore or 1,3-diaminopropane biosynthesis. The family TIGR00709 previously included both groups but has now been revised to exclude the ectoine biosynthesis proteins of this family. Ectoine is a compatible solute particularly effective in conferring salt tolerance.

>PLN02760 4-aminobutyrate:pyruvate transaminase

Probab=99.36  E-value=2.2e-10  Score=120.53  Aligned_cols=166  Identities=20%  Similarity=0.188  Sum_probs=100.6

Q ss_pred             cEEEeCcHHHHHHHHHHHHHHhcCCcccccCCCCCCCeEEEecCCCchHHHHHHHHhCCCC---------CcEEEEecCC
Q psy14299          4 KPFLLPGGSISNMYSICLARYRLDPDTKRKGLSHLPPLCMFTSEDSHYSMLKAAHWLGIGM---------DNVIRVKTNE   74 (448)
Q Consensus         4 ~g~~t~ggT~an~~al~~a~~~~~~~~~~~G~~~~~~~~Vl~~~~~H~s~~~~~~~~g~~~---------~~v~~v~~~~   74 (448)
                      .++|+++||+||..|+..+|....    ..|.+ ....+|......|-+...+..+.|...         ..+..++.+.
T Consensus       153 ~v~f~~SGsEA~e~AlKlAr~~~~----~~g~~-~r~~iI~~~~~yHG~t~~a~slsg~~~~~~~~~~~~~~~~~~~~p~  227 (504)
T PLN02760        153 KVFFTNSGSEANDTQVKLVWYYNN----ALGRP-NKKKFIARSKSYHGSTLISASLSGLPALHQKFDLPAPFVLHTDCPH  227 (504)
T ss_pred             EEEEeCChHHHHHHHHHHHHHHHH----hcCCC-CCcEEEEECCCccCChHhhhhccCChhhccCCCCCCCCcEEeCCCc
Confidence            378999999999999999985410    11211 134567777888888776666554311         0122233211


Q ss_pred             CCC-------------cCHHHHHHHHHHhhhcCCCcEEEEEeccCCccccccC----HHHHHHHHHHcCCEEEEeccc-c
Q psy14299         75 RGQ-------------MICSFLEQTIQTSLAEKKIPLFVNATAGTTVLGAFDP----LDEIATVCEKYDLWMHVDACW-G  136 (448)
Q Consensus        75 ~g~-------------id~e~Le~~l~~~~~~~~~~~lVv~~~~~t~tG~~~~----l~~I~~ia~~~g~~l~VD~A~-~  136 (448)
                      ..+             ...++|++.+.+.  ....+.+|++.-.....|.+.|    +++|.++|++||+++++|+++ |
T Consensus       228 ~~~~~~~~~~~~~~~~~~~~~le~~l~~~--~~~~iAAvI~EPv~g~gG~~~p~~~yl~~lr~lc~~~g~lLI~DEV~TG  305 (504)
T PLN02760        228 YWRFHLPGETEEEFSTRLADNLENLILKE--GPETIAAFIAEPVMGAGGVIPPPATYFEKIQAVLKKYDILFIADEVICA  305 (504)
T ss_pred             ccccCCCCCcHHHHHHHHHHHHHHHHHhc--CCCceEEEEECCccCCCCCcCCCHHHHHHHHHHHHHcCCEEEecchhhC
Confidence            111             1124567766431  1234667777777777788888    999999999999999999998 4


Q ss_pred             cccccccchhhhhcCCCCccEEEECCccccCCCC-ceEEEEEecc
Q psy14299        137 GSLIFSEKYSFVLKGINRANSVSWNPHKMLGAPL-QCSILLIKEK  180 (448)
Q Consensus       137 ~~~~~~~~~~~~~~~~~~aD~~~~s~hK~l~~P~-g~G~l~vr~~  180 (448)
                      .|-. ...+.....++ ..|++++  -|.+++-+ ..|.+.++++
T Consensus       306 fGRt-G~~~a~e~~gv-~PDivtl--gK~lggG~~PigAv~~~~~  346 (504)
T PLN02760        306 FGRL-GTMFGCDKYNI-KPDLVSL--AKALSSAYMPIGAVLVSPE  346 (504)
T ss_pred             Cccc-chhhHHHhcCC-CCcEEEe--cccccCCccccceEeecHH
Confidence            4332 11111112234 3787665  78886521 3566666543

>PRK06541 hypothetical protein; Provisional

Probab=99.34  E-value=1.1e-09  Score=114.34  Aligned_cols=166  Identities=15%  Similarity=0.170  Sum_probs=96.5

Q ss_pred             cEEEeCcHHHHHHHHHHHHHHhcCCcccccCCCCCCCeEEEecCCCchHHHHHHHHhCCC---------CCcEEEEecCC
Q psy14299          4 KPFLLPGGSISNMYSICLARYRLDPDTKRKGLSHLPPLCMFTSEDSHYSMLKAAHWLGIG---------MDNVIRVKTNE   74 (448)
Q Consensus         4 ~g~~t~ggT~an~~al~~a~~~~~~~~~~~G~~~~~~~~Vl~~~~~H~s~~~~~~~~g~~---------~~~v~~v~~~~   74 (448)
                      .++|+++||+|+-.|+..+|....    ..|.+ ....+|......|-...-+....+..         ...+..+|.+.
T Consensus       114 ~v~f~~sGseAve~AlklAr~~~~----~~g~~-~r~~ii~~~~~yHG~t~~a~s~~~~~~~~~~~~~~~~g~~~~~~~~  188 (460)
T PRK06541        114 RVFFTTGGSEAVESAWKLAKQYFK----LTGKP-GKHKVISRAIAYHGTTQGALAITGLPAFKAPFEPLVPGGFRVPNTN  188 (460)
T ss_pred             EEEEcCCcHHHHHHHHHHHHHHHH----hcCCC-CccEEEEEcCcccCcchhhhcCcCChhhccccCCCCCCcEEeCCCc
Confidence            478999999999999999987521    01111 02234555555665544443332211         01233344322


Q ss_pred             CCC-----cC--------HHHHHHHHHHhhhcCCCcEEEEEeccCCccccccC----HHHHHHHHHHcCCEEEEeccc-c
Q psy14299         75 RGQ-----MI--------CSFLEQTIQTSLAEKKIPLFVNATAGTTVLGAFDP----LDEIATVCEKYDLWMHVDACW-G  136 (448)
Q Consensus        75 ~g~-----id--------~e~Le~~l~~~~~~~~~~~lVv~~~~~t~tG~~~~----l~~I~~ia~~~g~~l~VD~A~-~  136 (448)
                      ..+     -+        ++.+++.+++.  ....+.+|++.-...+.|.+.|    +++|.++|++||+++++|+++ |
T Consensus       189 ~~~~~~~~~~~~~~~~~~~~~l~~~l~~~--~~~~~Aavi~EPv~g~~G~~~~~~~yl~~l~~lc~~~g~llI~DEV~tG  266 (460)
T PRK06541        189 FYRAPELGDDPEAFGRWAADRIEEAIEFE--GPDTVAAVFLEPVQNAGGCFPPPPGYFERVREICDRYDVLLVSDEVICA  266 (460)
T ss_pred             cccccccCCCHHHHHHHHHHHHHHHHHhc--CCCCEEEEEECCccCCCCCccCCHHHHHHHHHHHHHcCCEEEEechhhC
Confidence            111     12        25667666531  1224555666666777898888    999999999999999999998 4


Q ss_pred             cccccccchhhhhcCCCCccEEEECCccccCCCC-ceEEEEEecc
Q psy14299        137 GSLIFSEKYSFVLKGINRANSVSWNPHKMLGAPL-QCSILLIKEK  180 (448)
Q Consensus       137 ~~~~~~~~~~~~~~~~~~aD~~~~s~hK~l~~P~-g~G~l~vr~~  180 (448)
                      .|-. ...+.....++ ..|+++  ..|.+++-. ..|.++.+++
T Consensus       267 fGR~-G~~~a~~~~gv-~PDivt--~gK~l~~G~~pigav~~~~~  307 (460)
T PRK06541        267 FGRL-GEMFGCERFGY-VPDIIT--CAKGITSGYSPLGAMIASDR  307 (460)
T ss_pred             CCcC-chhhhhhhcCC-CCCEEE--ecccccCCccceeEEEEcHH
Confidence            4422 11111111233 368776  589887532 4677777664

>PRK04612 argD acetylornithine transaminase protein; Provisional

Probab=99.34  E-value=7.7e-10  Score=113.79  Aligned_cols=158  Identities=17%  Similarity=0.120  Sum_probs=89.2

Q ss_pred             cEEEeCcHHHHHHHHHHHHHHhcCCcccccCCCCCCCeEEEecCCCchHHHHHHHHhCCCC---------CcEEEEecCC
Q psy14299          4 KPFLLPGGSISNMYSICLARYRLDPDTKRKGLSHLPPLCMFTSEDSHYSMLKAAHWLGIGM---------DNVIRVKTNE   74 (448)
Q Consensus         4 ~g~~t~ggT~an~~al~~a~~~~~~~~~~~G~~~~~~~~Vl~~~~~H~s~~~~~~~~g~~~---------~~v~~v~~~~   74 (448)
                      .++|+++||+||-.|+..||....    +.|.+.....+|-.....|-...-+....+...         ..+..+|.+ 
T Consensus       100 ~v~f~~sGseA~e~AlklAr~~~~----~~g~~~~r~~ii~~~~~yHG~t~~~~s~~~~~~~~~~~~~~~~~~~~~~~~-  174 (408)
T PRK04612        100 KVFLCNSGTEANEAAIKLVRKWAS----SQGRPADKRVIVTFRGSFHGRTLAAVTATAQPKYQEGYEPLPGGFRYVDFN-  174 (408)
T ss_pred             EEEEcCchHHHHHHHHHHHHHHHH----hhCCCCCCcEEEEECCCcCCccHHHHHhcCCcccccCCCCCCCCceEcCCC-
Confidence            479999999999999999987521    112100122344445556655444444333210         012222222 


Q ss_pred             CCCcCHHHHHHHHHHhhhcCCCcEEEEEeccCCccc-cccC----HHHHHHHHHHcCCEEEEecccccccccccchhhhh
Q psy14299         75 RGQMICSFLEQTIQTSLAEKKIPLFVNATAGTTVLG-AFDP----LDEIATVCEKYDLWMHVDACWGGSLIFSEKYSFVL  149 (448)
Q Consensus        75 ~g~id~e~Le~~l~~~~~~~~~~~lVv~~~~~t~tG-~~~~----l~~I~~ia~~~g~~l~VD~A~~~~~~~~~~~~~~~  149 (448)
                          |++.+++.+++      .+...++..+...+| .+.|    +++|.++|++||+++++|+++.+.-.....+....
T Consensus       175 ----d~~~l~~~~~~------~~~aavi~eP~~~~gg~~~~~~~~l~~l~~l~~~~g~llI~DEv~tg~gr~G~~~a~~~  244 (408)
T PRK04612        175 ----DVEALEAAMAG------GDVAAVMLEPIQGEGGVMPAAPGFLARVRALCDQHDALLVLDEIQCGMGRTGTLFAHWQ  244 (408)
T ss_pred             ----CHHHHHHhhCC------CCEEEEEECCccCCCCCcCCCHHHHHHHHHHHHHcCCEEEEeccccCCCcCCchhhhhh
Confidence                78889888842      234444544555555 3332    89999999999999999999874222111111111


Q ss_pred             cCCCCccEEEECCccccCCCCceEEEEEec
Q psy14299        150 KGINRANSVSWNPHKMLGAPLQCSILLIKE  179 (448)
Q Consensus       150 ~~~~~aD~~~~s~hK~l~~P~g~G~l~vr~  179 (448)
                      .++ ..|+++  ..|.+++-...|.++.++
T Consensus       245 ~~~-~pdi~t--~~K~l~~G~piga~~~~~  271 (408)
T PRK04612        245 EQV-TPDIVT--LAKALGGGFPIGAMLAGP  271 (408)
T ss_pred             cCC-CCCEEE--EcchhcCCCceEEEEECH
Confidence            111 245554  478887534577776654

>PRK08360 4-aminobutyrate aminotransferase; Provisional

Probab=99.34  E-value=1.3e-09  Score=113.15  Aligned_cols=161  Identities=14%  Similarity=0.086  Sum_probs=95.8

Q ss_pred             cEEEeCcHHHHHHHHHHHHHHhcCCcccccCCCCCCCeEEEecCCCchHHHHHHHHhCCC---------CCcEEEEecCC
Q psy14299          4 KPFLLPGGSISNMYSICLARYRLDPDTKRKGLSHLPPLCMFTSEDSHYSMLKAAHWLGIG---------MDNVIRVKTNE   74 (448)
Q Consensus         4 ~g~~t~ggT~an~~al~~a~~~~~~~~~~~G~~~~~~~~Vl~~~~~H~s~~~~~~~~g~~---------~~~v~~v~~~~   74 (448)
                      .++|+++||+||-.|+..||..-       |    ...++-.....|-....+....+..         ...+..+|.+.
T Consensus       103 ~v~f~~sGsEAve~AlklAr~~t-------g----r~~ii~~~~~yHG~t~~a~s~~~~~~~~~~~~~~~~~~~~~~~~~  171 (443)
T PRK08360        103 KVSFGLSGSDANDGAIKFARAYT-------K----RRKILSYLRSYYGSTYGAMSLTGLDFPVRALVGELSDVHYIPYPD  171 (443)
T ss_pred             EEEEcCCHHHHHHHHHHHHHHhc-------C----CCeEEEEeCCcCCcCHHHHHhcCCCcccccCCCCCCCcEEEeCCc
Confidence            57999999999999999998752       1    2223333445565444444433321         01244444332


Q ss_pred             CCC------------cCHHHHHHHHHHhhhcCCCcEEEEEeccCCccccccC----HHHHHHHHHHcCCEEEEecccccc
Q psy14299         75 RGQ------------MICSFLEQTIQTSLAEKKIPLFVNATAGTTVLGAFDP----LDEIATVCEKYDLWMHVDACWGGS  138 (448)
Q Consensus        75 ~g~------------id~e~Le~~l~~~~~~~~~~~lVv~~~~~t~tG~~~~----l~~I~~ia~~~g~~l~VD~A~~~~  138 (448)
                      ..+            -+.+.+++.+++.. .+.++.+|++.-..+++|...|    +++|.++|++||+++++|.+|.+.
T Consensus       172 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~-~~~~iAAvi~eP~~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~~g~  250 (443)
T PRK08360        172 CYRCPFGKEPGSCKMECVEYIKEKFEGEV-YAEGVAALFAEPIQGDAGMIVPPEDYFKKLKKILDEHGILLVVDEVQSGL  250 (443)
T ss_pred             cccccccCchhhhHHHHHHHHHHHHHhcc-CCCCeEEEEECCccCCCCCcCCCHHHHHHHHHHHHHcCCEEEEeccccCC
Confidence            111            12345566664311 1245777888766678887765    899999999999999999998753


Q ss_pred             cccccchhhhhcCCCCccEEEECCccccCCCCceEEEEEec
Q psy14299        139 LIFSEKYSFVLKGINRANSVSWNPHKMLGAPLQCSILLIKE  179 (448)
Q Consensus       139 ~~~~~~~~~~~~~~~~aD~~~~s~hK~l~~P~g~G~l~vr~  179 (448)
                      -.....+.....++ ..|++++  .|.+++-..+|++..++
T Consensus       251 gr~G~~~a~~~~~~-~pDiitl--sK~l~~G~pigav~~~~  288 (443)
T PRK08360        251 GRTGKWFAIEHFGV-EPDIITL--GKPLGGGLPISATIGRA  288 (443)
T ss_pred             CcCccchhhhhcCC-CCCEEEe--cccccCCceeEEEEEcH
Confidence            22111111111133 2577655  89888534577777654

>PRK00062 glutamate-1-semialdehyde aminotransferase; Provisional

Probab=99.32  E-value=9.6e-10  Score=113.85  Aligned_cols=153  Identities=14%  Similarity=0.043  Sum_probs=95.5

Q ss_pred             cEEEeCcHHHHHHHHHHHHHHhcCCcccccCCCCCCCeEEEecCCCchHHHHHHHHhCCC----------CC------cE
Q psy14299          4 KPFLLPGGSISNMYSICLARYRLDPDTKRKGLSHLPPLCMFTSEDSHYSMLKAAHWLGIG----------MD------NV   67 (448)
Q Consensus         4 ~g~~t~ggT~an~~al~~a~~~~~~~~~~~G~~~~~~~~Vl~~~~~H~s~~~~~~~~g~~----------~~------~v   67 (448)
                      .++|+++|++||..|+..++...           ....+|......|-...-.....+.+          ..      ..
T Consensus       108 ~v~~~~sGseA~e~Aik~a~~~~-----------g~~~ii~~~~~yHG~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  176 (426)
T PRK00062        108 MVRMVNSGTEATMSAIRLARGYT-----------GRDKIIKFEGCYHGHADSLLVKAGSGAATLGLPDSPGVPEDFAKHT  176 (426)
T ss_pred             EEEEecCHHHHHHHHHHHHHHHh-----------CCCeEEEEcCccCCchhhhhhccCccccccCCCCCCCCCcccccce
Confidence            57899999999999999988751           13345556666676543222221110          00      01


Q ss_pred             EEEecCCCCCcCHHHHHHHHHHhhhcCCCcEEEEEeccCCccccccC----HHHHHHHHHHcCCEEEEeccccccccccc
Q psy14299         68 IRVKTNERGQMICSFLEQTIQTSLAEKKIPLFVNATAGTTVLGAFDP----LDEIATVCEKYDLWMHVDACWGGSLIFSE  143 (448)
Q Consensus        68 ~~v~~~~~g~id~e~Le~~l~~~~~~~~~~~lVv~~~~~t~tG~~~~----l~~I~~ia~~~g~~l~VD~A~~~~~~~~~  143 (448)
                      ..+|.     -|++++++.+++.   +.++.+|++.....++|.+.|    +++|.++|++||+++++|++|.+. ....
T Consensus       177 ~~~~~-----~d~~~l~~~i~~~---~~~~aaiivEpv~~~~G~~~~~~~~l~~l~~l~~~~~~llI~DEv~~G~-r~g~  247 (426)
T PRK00062        177 LTAPY-----NDLEAVEELFEEY---GDEIAAVIVEPVAGNMGVVPPKPGFLEGLRELCDEHGALLIFDEVMTGF-RVAL  247 (426)
T ss_pred             EEcCC-----CCHHHHHHHHHhC---CCcEEEEEEeCCcCCCCCcCCCHHHHHHHHHHHHHcCCEEEEeechhcc-ccCC
Confidence            12222     2789999988642   235678888877788898988    999999999999999999998744 2211


Q ss_pred             chhhhhcCCCCccEEEECCccccCCCCceEEEEEec
Q psy14299        144 KYSFVLKGINRANSVSWNPHKMLGAPLQCSILLIKE  179 (448)
Q Consensus       144 ~~~~~~~~~~~aD~~~~s~hK~l~~P~g~G~l~vr~  179 (448)
                      .+.....++ ..|+  .+..|.+++-...|.+..++
T Consensus       248 ~~~~~~~~~-~pDi--~~~gK~l~~G~p~ga~~~~~  280 (426)
T PRK00062        248 GGAQGYYGV-TPDL--TTLGKIIGGGLPVGAFGGRR  280 (426)
T ss_pred             ccHHHHhCC-Ccch--HhhhhHhhCCCcceeeeEHH
Confidence            111111122 2464  34579887533356665543

>TIGR00713 hemL glutamate-1-semialdehyde-2,1-aminomutase

Probab=99.32  E-value=1.3e-09  Score=112.68  Aligned_cols=153  Identities=14%  Similarity=0.051  Sum_probs=93.2

Q ss_pred             cEEEeCcHHHHHHHHHHHHHHhcCCcccccCCCCCCCeEEEecCCCchHHHHHHHHhCCCC----------------CcE
Q psy14299          4 KPFLLPGGSISNMYSICLARYRLDPDTKRKGLSHLPPLCMFTSEDSHYSMLKAAHWLGIGM----------------DNV   67 (448)
Q Consensus         4 ~g~~t~ggT~an~~al~~a~~~~~~~~~~~G~~~~~~~~Vl~~~~~H~s~~~~~~~~g~~~----------------~~v   67 (448)
                      .++|++|||+|+..|+..+|...           .++.+|......|-.........+.+.                ..+
T Consensus       106 ~v~~~~sGseA~e~Alk~ar~~~-----------gr~~ii~~~~~yhG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  174 (423)
T TIGR00713       106 MVRFVNSGTEATMSAVRLARGYT-----------GRDKIIKFEGCYHGHHDALLVKAGSGAATLGLPTSPGVPEDFAKLT  174 (423)
T ss_pred             EEEEeCCHHHHHHHHHHHHHHhh-----------CCCEEEEEcCCCCCChhhhhccccCcccccCCCCCCCCCcccccce
Confidence            47899999999999999988752           133344445555543332222111100                011


Q ss_pred             EEEecCCCCCcCHHHHHHHHHHhhhcCCCcEEEEEeccCCccccccC----HHHHHHHHHHcCCEEEEeccccccccccc
Q psy14299         68 IRVKTNERGQMICSFLEQTIQTSLAEKKIPLFVNATAGTTVLGAFDP----LDEIATVCEKYDLWMHVDACWGGSLIFSE  143 (448)
Q Consensus        68 ~~v~~~~~g~id~e~Le~~l~~~~~~~~~~~lVv~~~~~t~tG~~~~----l~~I~~ia~~~g~~l~VD~A~~~~~~~~~  143 (448)
                      ..+|.     -|++++++.+++.   +.++.+|++.....++|.+.|    +++|.++|++||+++++|++|.+... ..
T Consensus       175 ~~~~~-----~d~~~l~~~i~~~---~~~~aavi~ep~~~~~G~~~~~~~~l~~l~~l~~~~~~llI~DEv~~g~r~-g~  245 (423)
T TIGR00713       175 LVLPY-----NDLEALEEVFEEY---GEEIAGVIVEPVAGNMGVVPPKPEFLAGLRALTEEYGSLLIFDEVMTGFRV-AL  245 (423)
T ss_pred             EEeCC-----CCHHHHHHHHHHc---CCcEEEEEEeCCCCCCCCcCCCHHHHHHHHHHHHHhCCEEEEEcccccccc-Cc
Confidence            22222     1899999998642   235677888655555897766    79999999999999999999865421 11


Q ss_pred             chhhhhcCCCCccEEEECCccccCCCCceEEEEEec
Q psy14299        144 KYSFVLKGINRANSVSWNPHKMLGAPLQCSILLIKE  179 (448)
Q Consensus       144 ~~~~~~~~~~~aD~~~~s~hK~l~~P~g~G~l~vr~  179 (448)
                      .......++ ..|.+  +..|.+++-...|.++.++
T Consensus       246 ~~~~~~~~~-~pDi~--t~sK~l~~G~pig~v~~~~  278 (423)
T TIGR00713       246 GGAQEYFGV-EPDLT--TLGKIIGGGLPVGAFGGRR  278 (423)
T ss_pred             chhHHHhCC-Ccchh--hhhhhhcCCCceeeeeEHH
Confidence            111111222 24644  5789887433467776654

This enzyme, glutamate-1-semialdehyde-2,1-aminomutase (glutamate-1-semialdehyde aminotransferase, GSA aminotransferase), contains a pyridoxal phosphate attached at a Lys residue at position 283 of the seed alignment. It is in the family of class III aminotransferases.

>PRK06959 putative threonine-phosphate decarboxylase; Provisional

Probab=99.32  E-value=8.7e-10  Score=110.74  Aligned_cols=143  Identities=10%  Similarity=-0.028  Sum_probs=91.7

Q ss_pred             cEEEeCcHHHHHHHHHHHHHHhcCCcccccCCCCCCCeEEEecCCCchHHHHHHHHhCCCCCcEEEEecCCCCCcCHHHH
Q psy14299          4 KPFLLPGGSISNMYSICLARYRLDPDTKRKGLSHLPPLCMFTSEDSHYSMLKAAHWLGIGMDNVIRVKTNERGQMICSFL   83 (448)
Q Consensus         4 ~g~~t~ggT~an~~al~~a~~~~~~~~~~~G~~~~~~~~Vl~~~~~H~s~~~~~~~~g~~~~~v~~v~~~~~g~id~e~L   83 (448)
                      ..++|+|+++++... ..+..              +++ |++...++..+...++..|.   +++.++.++      +. 
T Consensus        73 ~I~i~~Gs~e~i~~l-~~~~~--------------~g~-v~v~~P~y~~y~~~~~~~g~---~~~~v~~~~------~~-  126 (339)
T PRK06959         73 HVLPVAGSQAAIRAL-PALLP--------------RGR-VGIAPLAYSEYAPAFARHGH---RVVPLDEAA------DT-  126 (339)
T ss_pred             cEEECcCHHHHHHHH-HHhcC--------------CCe-EEEcCCCcHHHHHHHHHCCC---EEEeecccc------hh-
Confidence            568899999986533 22222              444 66677888889999999988   677777642      22 


Q ss_pred             HHHHHHhhhcCCCcEEEEEeccCCccccccCHHHHHHH---HHHcCCEEEEecccccccccccchhhhhcCCCCccEEEE
Q psy14299         84 EQTIQTSLAEKKIPLFVNATAGTTVLGAFDPLDEIATV---CEKYDLWMHVDACWGGSLIFSEKYSFVLKGINRANSVSW  160 (448)
Q Consensus        84 e~~l~~~~~~~~~~~lVv~~~~~t~tG~~~~l~~I~~i---a~~~g~~l~VD~A~~~~~~~~~~~~~~~~~~~~aD~~~~  160 (448)
                         +.+      ..+.++++.++|+||.+.+.+++.++   |++++.++++|.+|.-.... +...... .... =++.-
T Consensus       127 ---~~~------~~~~v~l~nPnNPTG~~~s~~~l~~l~~~~~~~~~~vI~DEay~~~~~~-~s~~~~~-~~~~-vi~l~  194 (339)
T PRK06959        127 ---LPA------ALTHLIVVNPNNPTAERLPAARLLRWHAQLAARGGTLIVDEAFADTLPA-ASLAAHT-DRPG-LVVLR  194 (339)
T ss_pred             ---ccc------cCCEEEEeCCCCCCCCCCCHHHHHHHHHHHHHcCCEEEEECCCccCCCc-ccchhcc-CCCC-EEEEe
Confidence               211      24588999999999999887666655   56789999999998854321 1111100 0011 15667


Q ss_pred             CCccccCCC-CceEEEEEeccchhhh
Q psy14299        161 NPHKMLGAP-LQCSILLIKEKGLLHQ  185 (448)
Q Consensus       161 s~hK~l~~P-~g~G~l~vr~~~~~~~  185 (448)
                      |+.|.++.| .-+|+++. ++++...
T Consensus       195 SfSK~~gl~GlRiGy~v~-~~~li~~  219 (339)
T PRK06959        195 SVGKFFGLAGVRAGFVLA-APALLAA  219 (339)
T ss_pred             cChhhcCCcchheEEEec-CHHHHHH
Confidence            899988755 34566665 3444433

>PRK06058 4-aminobutyrate aminotransferase; Provisional

Probab=99.32  E-value=2e-09  Score=112.03  Aligned_cols=163  Identities=13%  Similarity=0.046  Sum_probs=91.7

Q ss_pred             cEEEeCcHHHHHHHHHHHHHHhcCCcccccCCCCCCCeEEEecCCCchHHHHHHHHhCC--------C--CCcEEEEecC
Q psy14299          4 KPFLLPGGSISNMYSICLARYRLDPDTKRKGLSHLPPLCMFTSEDSHYSMLKAAHWLGI--------G--MDNVIRVKTN   73 (448)
Q Consensus         4 ~g~~t~ggT~an~~al~~a~~~~~~~~~~~G~~~~~~~~Vl~~~~~H~s~~~~~~~~g~--------~--~~~v~~v~~~   73 (448)
                      ..+|+++||+||-.|+..||...       |    .+.+|......|-...-+..+.+.        +  ...+..+|..
T Consensus       119 ~v~f~~sGseA~e~AlklAr~~t-------g----r~~ii~~~~~yHG~t~~al~~~~~~~~~~~~~~~~~~~~~~~~~~  187 (443)
T PRK06058        119 RSALFNSGAEAVENAVKIARSYT-------G----RQAVVVFDHAYHGRTNLTMALTAKSMPYKSGFGPFAPEVYRAPMS  187 (443)
T ss_pred             EEEEeCCcHHHHHHHHHHHHHhh-------C----CCeEEEECCCcCcChHHHHhhcCCCcccccccCCCCCCceEcCCC
Confidence            57899999999999999998752       1    233455555666655554443321        0  1122333321


Q ss_pred             CCCC------cCH-HHHHHHHHHhhh--cCCCcEEEEEeccCCccccccC----HHHHHHHHHHcCCEEEEecccccccc
Q psy14299         74 ERGQ------MIC-SFLEQTIQTSLA--EKKIPLFVNATAGTTVLGAFDP----LDEIATVCEKYDLWMHVDACWGGSLI  140 (448)
Q Consensus        74 ~~g~------id~-e~Le~~l~~~~~--~~~~~~lVv~~~~~t~tG~~~~----l~~I~~ia~~~g~~l~VD~A~~~~~~  140 (448)
                      ...+      .+. +.+++.++.-.+  .+.++.+|++.-.....|.+.|    +++|.++|++||+++++|+.+.+.-.
T Consensus       188 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~iAavi~EPi~g~gG~~~p~~~yl~~lr~lc~~~gillI~DEV~tGfgR  267 (443)
T PRK06058        188 YPYRDPKGLATDGEEAAARAITVIEKQVGADNLAAVIIEPIQGEGGFIVPAEGFLPALLEWCRENGVVFIADEVQTGFAR  267 (443)
T ss_pred             cccccccccccchHHHHHHHHHHHHHhhCCCceEEEEECCccCCCCCcCCCHHHHHHHHHHHHHcCCEEEEeccccCCCc
Confidence            1111      111 222222221110  1234556666555555566654    99999999999999999998875322


Q ss_pred             cccchhhhhcCCCCccEEEECCccccCCCCceEEEEEecc
Q psy14299        141 FSEKYSFVLKGINRANSVSWNPHKMLGAPLQCSILLIKEK  180 (448)
Q Consensus       141 ~~~~~~~~~~~~~~aD~~~~s~hK~l~~P~g~G~l~vr~~  180 (448)
                      ....+.....++ ..|.++++  |.+++-...|.++.+++
T Consensus       268 tG~~fa~~~~gv-~PDiv~~g--K~l~~G~Pi~av~~~~~  304 (443)
T PRK06058        268 TGAWFACEHEGI-VPDLITTA--KGIAGGLPLSAVTGRAE  304 (443)
T ss_pred             ChhhhHHHhcCC-CCCEEEEc--ccccCCCccEEEEEcHH
Confidence            111111111233 36888884  98875556788777654

>PLN02397 aspartate transaminase

Probab=99.31  E-value=1.1e-09  Score=113.38  Aligned_cols=132  Identities=10%  Similarity=0.043  Sum_probs=94.4

Q ss_pred             CCeEEEecCCCchHHHHHHHHhCCCCCcEEEEec-C-CCCCcCHHHHHHHHHHhhhcCCCcEEEEEeccCCccccccC--
Q psy14299         39 PPLCMFTSEDSHYSMLKAAHWLGIGMDNVIRVKT-N-ERGQMICSFLEQTIQTSLAEKKIPLFVNATAGTTVLGAFDP--  114 (448)
Q Consensus        39 ~~~~Vl~~~~~H~s~~~~~~~~g~~~~~v~~v~~-~-~~g~id~e~Le~~l~~~~~~~~~~~lVv~~~~~t~tG~~~~--  114 (448)
                      |++.|++++..+..+...++..|.   +++.+|. + +++.+|++.+++.+.+.   ..+++++++..++|+||.+.+  
T Consensus       141 pGd~Vlv~~P~y~~y~~~~~~~g~---~~~~v~l~~~~~~~~d~~~l~~~l~~~---~~~~~~i~~~~P~NPTG~v~s~e  214 (423)
T PLN02397        141 PGSTIYIPNPTWGNHHNIFRDAGV---PVRTYRYYDPKTRGLDFDGLLEDLKAA---PDGSFVLLHACAHNPTGVDPTPE  214 (423)
T ss_pred             CCCEEEEeCCCchhHHHHHHHcCC---eEEEeecccCcCCccCHHHHHHHHHhC---CCCCEEEEeCCCCCCCCCCCCHH
Confidence            667899999999999999999998   7888886 3 34689999999888642   135678888999999998855  


Q ss_pred             -HHHHHHHHHHcCCEEEEecccccccccc---cchh-hhhcCCCCccEEEECCccccCCC-CceEEEE
Q psy14299        115 -LDEIATVCEKYDLWMHVDACWGGSLIFS---EKYS-FVLKGINRANSVSWNPHKMLGAP-LQCSILL  176 (448)
Q Consensus       115 -l~~I~~ia~~~g~~l~VD~A~~~~~~~~---~~~~-~~~~~~~~aD~~~~s~hK~l~~P-~g~G~l~  176 (448)
                       +++|+++|++||+++++|.+|.......   +... ........-=+++.|+.|.++.| .-+|+++
T Consensus       215 ~l~~i~~~a~~~~~~vI~De~Y~~l~~~~~~~~~~~~~~~~~~~~~vI~~~SfSK~~~~~G~RvG~~v  282 (423)
T PLN02397        215 QWEQISDLIKSKNHLPFFDSAYQGFASGDLDADAQSVRMFVEDGHEILVAQSYAKNMGLYGERVGALS  282 (423)
T ss_pred             HHHHHHHHHHhCCcEEEEecccCCccCCchhhhhHHHHHHHhcCCcEEEEEECcccCCCccccceEEE
Confidence             6678889999999999999987654311   0000 01111100114556889998854 3456664

>PRK12403 putative aminotransferase; Provisional

Probab=99.31  E-value=4.4e-09  Score=109.83  Aligned_cols=165  Identities=20%  Similarity=0.173  Sum_probs=97.6

Q ss_pred             cEEEeCcHHHHHHHHHHHHHHhcCCcccccCCCCCCCeEEEe--cCCCchHHHHHHHHhCCCC--------CcEEEEecC
Q psy14299          4 KPFLLPGGSISNMYSICLARYRLDPDTKRKGLSHLPPLCMFT--SEDSHYSMLKAAHWLGIGM--------DNVIRVKTN   73 (448)
Q Consensus         4 ~g~~t~ggT~an~~al~~a~~~~~~~~~~~G~~~~~~~~Vl~--~~~~H~s~~~~~~~~g~~~--------~~v~~v~~~   73 (448)
                      .++|+++||+||..|+..+|....    ..|   .++..+++  ....|-+...+..+.+...        ..+..+|.+
T Consensus       117 ~v~f~~SGseA~e~AiklAr~~~~----~~g---~~~r~~ii~~~~~yHG~t~~~~s~s~~~~~~~~~~~~~~~~~~~~p  189 (460)
T PRK12403        117 HAIYTNSGSEANEVLIRTVRRYWQ----VLG---KPQKKIMIGRWNGYHGSTLAATALGGMKFMHEMGGLIPDVAHIDEP  189 (460)
T ss_pred             EEEEeCCcHHHHHHHHHHHHHHHH----hhC---CCCCcEEEEECCCcCcccHhhhhcCCCccccccCCCCCCCEEeCCC
Confidence            479999999999999999986410    001   12222333  3445888777766554321        113333322


Q ss_pred             CCC----Cc--------CHHHHHHHHHHhhhcCCCcEEEEEeccCCccccccC----HHHHHHHHHHcCCEEEEeccccc
Q psy14299         74 ERG----QM--------ICSFLEQTIQTSLAEKKIPLFVNATAGTTVLGAFDP----LDEIATVCEKYDLWMHVDACWGG  137 (448)
Q Consensus        74 ~~g----~i--------d~e~Le~~l~~~~~~~~~~~lVv~~~~~t~tG~~~~----l~~I~~ia~~~g~~l~VD~A~~~  137 (448)
                      ...    .+        +.++|++.+.+.  ....+.+|++.-.....|.+.|    +++|.++|++||+++++|+++++
T Consensus       190 ~~~~~~~~~~~~~~~~~~~~~le~~~~~~--~~~~iaavI~Epv~g~gG~~~~~~~yl~~lr~lc~~~g~lLI~DEV~tG  267 (460)
T PRK12403        190 YWYANGGELTPAEFGRRAALQLEEKILEL--GAENVAGFVAEPFQGAGGMIFPPESYWPEIQRICRQYDVLLCADEVIGG  267 (460)
T ss_pred             cccccccCCChHHHHHHHHHHHHHHHHHh--CCCceEEEEEccccCCCCCccCCHHHHHHHHHHHHHcCCEEEEeccccC
Confidence            100    11        135566655431  1134567777777777788887    99999999999999999999864


Q ss_pred             ccccccchhhhhcCCCCccEEEECCccccCCCC-ceEEEEEecc
Q psy14299        138 SLIFSEKYSFVLKGINRANSVSWNPHKMLGAPL-QCSILLIKEK  180 (448)
Q Consensus       138 ~~~~~~~~~~~~~~~~~aD~~~~s~hK~l~~P~-g~G~l~vr~~  180 (448)
                      .--....+.....++. .|+++  ..|.+++-+ .+|.++.+++
T Consensus       268 fGRtG~~~a~e~~gv~-PDiv~--~gK~lggG~~Piga~v~~~~  308 (460)
T PRK12403        268 FGRTGEWFAHEHFGFE-PDTLS--IAKGLTSGYVPMGGLVLSKR  308 (460)
T ss_pred             CCcCchhhhhhhcCCC-CCeEE--EcccccccccceEEEEECHH
Confidence            3111111111112343 58887  588877543 5677667543

>COG0626 MetC Cystathionine beta-lyases/cystathionine gamma-synthases [Amino acid transport and metabolism]

Probab=99.29  E-value=7.1e-10  Score=111.84  Aligned_cols=134  Identities=16%  Similarity=0.121  Sum_probs=101.1

Q ss_pred             cEEEeCcHHHHHHHHHHHHHHhcCCcccccCCCCCCCeEEEecCCCchHHHHHHH----HhCCCCCcEEEEecCCCCCcC
Q psy14299          4 KPFLLPGGSISNMYSICLARYRLDPDTKRKGLSHLPPLCMFTSEDSHYSMLKAAH----WLGIGMDNVIRVKTNERGQMI   79 (448)
Q Consensus         4 ~g~~t~ggT~an~~al~~a~~~~~~~~~~~G~~~~~~~~Vl~~~~~H~s~~~~~~----~~g~~~~~v~~v~~~~~g~id   79 (448)
                      .++.+++|..|+..++....+              +++.|+.++..+......+.    ..|+   ++..+...     +
T Consensus        80 ~~~afsSGmaAI~~~~l~ll~--------------~GD~vl~~~~~YG~t~~~~~~~l~~~gi---~~~~~d~~-----~  137 (396)
T COG0626          80 DAFAFSSGMAAISTALLALLK--------------AGDHVLLPDDLYGGTYRLFEKILQKFGV---EVTFVDPG-----D  137 (396)
T ss_pred             cEEEecCcHHHHHHHHHHhcC--------------CCCEEEecCCccchHHHHHHHHHHhcCe---EEEEECCC-----C
Confidence            478888888888777666554              56777777776665544443    3344   56666543     6


Q ss_pred             HHHHHHHHHHhhhcCCCcEEEEEeccCCccccccCHHHHHHHHHHcCCEEEEecccccccccccchhhhhcCCCCccEEE
Q psy14299         80 CSFLEQTIQTSLAEKKIPLFVNATAGTTVLGAFDPLDEIATVCEKYDLWMHVDACWGGSLIFSEKYSFVLKGINRANSVS  159 (448)
Q Consensus        80 ~e~Le~~l~~~~~~~~~~~lVv~~~~~t~tG~~~~l~~I~~ia~~~g~~l~VD~A~~~~~~~~~~~~~~~~~~~~aD~~~  159 (448)
                      .+.+++++.+     +++++|.+..++|++.-+.||++|+++||++|+.++||.+++...+.-+-    -.   ++|+++
T Consensus       138 ~~~~~~~~~~-----~~tk~v~lEtPsNP~l~v~DI~~i~~~A~~~g~~vvVDNTfatP~~q~PL----~~---GaDIVv  205 (396)
T COG0626         138 DEALEAAIKE-----PNTKLVFLETPSNPLLEVPDIPAIARLAKAYGALVVVDNTFATPVLQRPL----EL---GADIVV  205 (396)
T ss_pred             hHHHHHHhcc-----cCceEEEEeCCCCcccccccHHHHHHHHHhcCCEEEEECCcccccccChh----hc---CCCEEE
Confidence            6677777653     25899999999999999999999999999999999999999877663221    11   489999


Q ss_pred             ECCccccCCCCc
Q psy14299        160 WNPHKMLGAPLQ  171 (448)
Q Consensus       160 ~s~hK~l~~P~g  171 (448)
                      -|..|.+++...
T Consensus       206 hSaTKyl~GHsD  217 (396)
T COG0626         206 HSATKYLGGHSD  217 (396)
T ss_pred             EeccccccCCcc
Confidence            999999998754

>KOG0257|consensus

Probab=99.29  E-value=3.2e-10  Score=112.21  Aligned_cols=114  Identities=14%  Similarity=0.054  Sum_probs=98.0

Q ss_pred             cEEEeCcHHHHHHHHHHHHHHhcCCcccccCCCCCCCeEEEecCCCchHHHHHHHHhCCCCCcEEEEecC--------CC
Q psy14299          4 KPFLLPGGSISNMYSICLARYRLDPDTKRKGLSHLPPLCMFTSEDSHYSMLKAAHWLGIGMDNVIRVKTN--------ER   75 (448)
Q Consensus         4 ~g~~t~ggT~an~~al~~a~~~~~~~~~~~G~~~~~~~~Vl~~~~~H~s~~~~~~~~g~~~~~v~~v~~~--------~~   75 (448)
                      .+++|.|+.+++..+++..++              +++.|++-+....++.....+.|.   ..+.++..        .+
T Consensus        95 eVlVT~GA~~ai~~~~~~l~~--------------~GDeVii~eP~fd~Y~~~~~maG~---tpv~v~~~~~~g~~~s~~  157 (420)
T KOG0257|consen   95 EVLVTAGANEAISSALLGLLN--------------PGDEVIVFEPFFDCYIPQVVMAGG---TPVFVPLKPKEGNVSSSD  157 (420)
T ss_pred             cEEEecCchHHHHHHHHHHcC--------------CCCEEEEecCcchhhhhHHhhcCC---cceeeccccccccccCcc
Confidence            588999999999989888776              677788888999999999999998   44555543        57


Q ss_pred             CCcCHHHHHHHHHHhhhcCCCcEEEEEeccCCccccccC---HHHHHHHHHHcCCEEEEecccccccc
Q psy14299         76 GQMICSFLEQTIQTSLAEKKIPLFVNATAGTTVLGAFDP---LDEIATVCEKYDLWMHVDACWGGSLI  140 (448)
Q Consensus        76 g~id~e~Le~~l~~~~~~~~~~~lVv~~~~~t~tG~~~~---l~~I~~ia~~~g~~l~VD~A~~~~~~  140 (448)
                      +.+|+++++.++.+      +|++|+++.++|++|.+.+   |++|+++|++||.+++.|.+|-....
T Consensus       158 ~~~D~~~le~~~t~------kTk~Ii~ntPhNPtGkvfsReeLe~ia~l~~k~~~lvisDevYe~~v~  219 (420)
T KOG0257|consen  158 WTLDPEELESKITE------KTKAIILNTPHNPTGKVFSREELERIAELCKKHGLLVISDEVYEWLVY  219 (420)
T ss_pred             ccCChHHHHhhccC------CccEEEEeCCCCCcCcccCHHHHHHHHHHHHHCCEEEEEhhHhHHHhh
Confidence            89999999999976      6999999999999997755   89999999999999999998876554

>PRK13360 omega amino acid--pyruvate transaminase; Provisional

Probab=99.28  E-value=3.5e-09  Score=110.04  Aligned_cols=166  Identities=14%  Similarity=0.143  Sum_probs=95.3

Q ss_pred             cEEEeCcHHHHHHHHHHHHHHhcCCcccccCCCCCCCeEEEecCCCchHHHHHHHHhCCC---------CCcEEEEecCC
Q psy14299          4 KPFLLPGGSISNMYSICLARYRLDPDTKRKGLSHLPPLCMFTSEDSHYSMLKAAHWLGIG---------MDNVIRVKTNE   74 (448)
Q Consensus         4 ~g~~t~ggT~an~~al~~a~~~~~~~~~~~G~~~~~~~~Vl~~~~~H~s~~~~~~~~g~~---------~~~v~~v~~~~   74 (448)
                      .++|+++||+||-.|+..||....    ..|-. ....+|......|-...-+....|..         ...+..+|...
T Consensus       108 ~v~f~~sGseA~e~AlklAr~~~~----~~g~~-~r~~ii~~~~~yHG~t~gals~tg~~~~~~~~~~~~~~~~~~p~~~  182 (442)
T PRK13360        108 HVFFTNSGSESVDTALKIALAYHR----ARGEG-SRTRLIGRERGYHGVGFGGISVGGIVPNRKAFGALLPGVDHLPHTL  182 (442)
T ss_pred             EEEEeCCcHHHHHHHHHHHHHHHH----hcCCC-CCcEEEEEcCCcCCccHhhhhccCChhhhhccCCCCCCCEEeCCCc
Confidence            478999999999999999987521    01100 01233444455554433332222210         01233344321


Q ss_pred             C-CC--c----------CHHHHHHHHHHhhhcCCCcEEEEEeccCCccccccC----HHHHHHHHHHcCCEEEEeccc-c
Q psy14299         75 R-GQ--M----------ICSFLEQTIQTSLAEKKIPLFVNATAGTTVLGAFDP----LDEIATVCEKYDLWMHVDACW-G  136 (448)
Q Consensus        75 ~-g~--i----------d~e~Le~~l~~~~~~~~~~~lVv~~~~~t~tG~~~~----l~~I~~ia~~~g~~l~VD~A~-~  136 (448)
                      + .+  +          ..++|++.++..  .+..+.+|++.-.....|.+.|    +++|.++|++||+++++|+++ |
T Consensus       183 ~~~~~~~~~~~~~~~~~~~~~le~~l~~~--~~~~~aavivEpi~g~~G~~~~~~~fl~~lr~lc~~~g~llI~DEv~tG  260 (442)
T PRK13360        183 DLARNAFSKGQPEHGAELADELERLVTLH--DASTIAAVIVEPVAGSTGVLIPPKGYLQRLREICDKHGILLIFDEVITG  260 (442)
T ss_pred             hhhccccCCChHHHHHHHHHHHHHHHHhc--CCCcEEEEEEccccCCCCCccCCHHHHHHHHHHHHHcCCEEEEechhhC
Confidence            1 00  1          245777777531  1235667888878887899888    999999999999999999998 4


Q ss_pred             cccccccchhhhhcCCCCccEEEECCccccCCC-CceEEEEEecc
Q psy14299        137 GSLIFSEKYSFVLKGINRANSVSWNPHKMLGAP-LQCSILLIKEK  180 (448)
Q Consensus       137 ~~~~~~~~~~~~~~~~~~aD~~~~s~hK~l~~P-~g~G~l~vr~~  180 (448)
                      .|.. ...+.....++ ..|++++  .|.+++- ..+|.+..+++
T Consensus       261 ~Grt-G~~~a~~~~gv-~PDivt~--gK~l~gG~~P~gav~~~~~  301 (442)
T PRK13360        261 FGRL-GAPFAAQYFGV-TPDLLTC--AKGLTNGAIPMGAVFVSSE  301 (442)
T ss_pred             CCCC-ccchhhhhcCC-CCceeee--eeccccCccceEEEEEcHH
Confidence            4332 11111111233 3687654  8988642 23566666554

>TIGR00700 GABAtrnsam 4-aminobutyrate aminotransferase, prokaryotic type

Probab=99.28  E-value=9.6e-09  Score=106.24  Aligned_cols=162  Identities=12%  Similarity=0.053  Sum_probs=96.4

Q ss_pred             cEEEeCcHHHHHHHHHHHHHHhcCCcccccCCCCCCCeEEEecCCCchHHHHHHHHhCC--------C--CCcEEEEecC
Q psy14299          4 KPFLLPGGSISNMYSICLARYRLDPDTKRKGLSHLPPLCMFTSEDSHYSMLKAAHWLGI--------G--MDNVIRVKTN   73 (448)
Q Consensus         4 ~g~~t~ggT~an~~al~~a~~~~~~~~~~~G~~~~~~~~Vl~~~~~H~s~~~~~~~~g~--------~--~~~v~~v~~~   73 (448)
                      .++|+++||+||-.|+..||...       |    ...+|......|-...-+....+-        +  ...+..+|..
T Consensus        96 ~v~f~~sGseA~e~AlklAr~~t-------g----r~~ii~~~~~yHG~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  164 (420)
T TIGR00700        96 KSVFFNSGAEAVENAVKIARSYT-------G----RPGVVAFDHGFHGRTNMTMALTAKVMPYKSGFGPFAPEVYRAPLP  164 (420)
T ss_pred             EEEEeCCcHHHHHHHHHHHHHhc-------C----CCcEEEECCCcCCCcHHHHHhcCCCcccccCCCCCCCCcEEeCCC
Confidence            47999999999999999998752       1    223455555666554444433221        0  1123334432


Q ss_pred             CCCC-------c----CHHHHHHHHHHhhhcCCCcEEEEEeccCCccccccC----HHHHHHHHHHcCCEEEEecccccc
Q psy14299         74 ERGQ-------M----ICSFLEQTIQTSLAEKKIPLFVNATAGTTVLGAFDP----LDEIATVCEKYDLWMHVDACWGGS  138 (448)
Q Consensus        74 ~~g~-------i----d~e~Le~~l~~~~~~~~~~~lVv~~~~~t~tG~~~~----l~~I~~ia~~~g~~l~VD~A~~~~  138 (448)
                      ...+       .    +++.+++.+... ..+....+|++.-....+|...|    +++|.++|++||+++++|+.+.+.
T Consensus       165 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~iAavi~Epi~g~~G~~~~~~~~l~~l~~lc~~~gillI~DEV~tg~  243 (420)
T TIGR00700       165 YPYRDGLLDKQLSTDGELAAARAIFVID-VGANNVAALVIEPVQGEGGFIVPAKGFVPALLDWCREHGIVFIADEVQTGF  243 (420)
T ss_pred             ccccccccccchhHHHHHHHHHHHHHhh-cCCCcEEEEEECCccCCCCCccCCHHHHHHHHHHHHHcCCEEEEEecccCC
Confidence            1111       1    245666665311 12235667777776666787766    999999999999999999998754


Q ss_pred             cccccchhhhhcCCCCccEEEECCccccCCCCceEEEEEecc
Q psy14299        139 LIFSEKYSFVLKGINRANSVSWNPHKMLGAPLQCSILLIKEK  180 (448)
Q Consensus       139 ~~~~~~~~~~~~~~~~aD~~~~s~hK~l~~P~g~G~l~vr~~  180 (448)
                      ......+.....++ ..|+++  ..|.+++-..+|.++.+++
T Consensus       244 gr~g~~~a~~~~~~-~pDi~~--lsK~l~~G~pig~v~~~~~  282 (420)
T TIGR00700       244 ARTGAMFACEHEGP-EPDLIT--TAKSLADGLPLSGVTGRAE  282 (420)
T ss_pred             cccchhHHHhhcCC-CCCEEE--eeccccCCcceEEEEecHH
Confidence            22111111111122 367665  6898875456777777543

Alternate names include GABA transaminase, gamma-amino-N-butyrate transaminase, and beta-alanine--oxoglutarate aminotransferase.

>PRK06062 hypothetical protein; Provisional

Probab=99.28  E-value=1.3e-08  Score=106.15  Aligned_cols=161  Identities=16%  Similarity=0.165  Sum_probs=98.1

Q ss_pred             cEEEeCcHHHHHHHHHHHHHHhcCCcccccCCCCCCCeEEEecCCCchHHHHHHHHhCCCC--------CcEEEEecCCC
Q psy14299          4 KPFLLPGGSISNMYSICLARYRLDPDTKRKGLSHLPPLCMFTSEDSHYSMLKAAHWLGIGM--------DNVIRVKTNER   75 (448)
Q Consensus         4 ~g~~t~ggT~an~~al~~a~~~~~~~~~~~G~~~~~~~~Vl~~~~~H~s~~~~~~~~g~~~--------~~v~~v~~~~~   75 (448)
                      .++|+++||+|+-.|+..||...       |    ...+|......|-...-+....+...        ..+..++.+..
T Consensus       114 ~v~f~~SGsEAve~AlklAr~~t-------g----r~~ii~~~~~yHG~t~~als~~~~~~~~~~~~~~~~~~~~~~p~~  182 (451)
T PRK06062        114 KVFFTNGGADANEHAVRMARLHT-------G----RPKVLSAYRSYHGGTGSAINLTGDPRRWPNDTGRAGVVHFFGPFL  182 (451)
T ss_pred             EEEEcCChHHHHHHHHHHHHHhh-------C----CceEEEEeCCCCCCCHHHHhhcCCcccccCCCCCCCCEEeCCCCc
Confidence            47899999999999999998752       1    23344445556655444444333210        01222322211


Q ss_pred             CC------cC-------HHHHHHHHHHhhhcCCCcEEEEEeccCCccccccC----HHHHHHHHHHcCCEEEEecccccc
Q psy14299         76 GQ------MI-------CSFLEQTIQTSLAEKKIPLFVNATAGTTVLGAFDP----LDEIATVCEKYDLWMHVDACWGGS  138 (448)
Q Consensus        76 g~------id-------~e~Le~~l~~~~~~~~~~~lVv~~~~~t~tG~~~~----l~~I~~ia~~~g~~l~VD~A~~~~  138 (448)
                      .+      -|       ++++++.++..  .+.++.+|++.-.....|.+.|    +++|.++|++||+++++|.++.+.
T Consensus       183 ~~~~~~~~~~~~~~~~~~~~le~~l~~~--~~~~iAaviiEPv~g~gG~~~p~~~yl~~lr~lc~~~g~lLI~DEV~tGf  260 (451)
T PRK06062        183 YRSEFHATTEEEECERALAHLERVIELE--GPSTIAAILLESVPGTAGILVPPPGYLAGVRELCDRHGIVLIADEVMAGF  260 (451)
T ss_pred             cccccCCCChHHHHHHHHHHHHHHHHhc--CCCceEEEEEccccCCCCcccCCHHHHHHHHHHHHHcCCEEEeeccccCC
Confidence            11      12       57777777531  1234667777777777788888    999999999999999999998853


Q ss_pred             cccccchhhhhcCCCCccEEEECCccccCCCC-ceEEEEEecc
Q psy14299        139 LIFSEKYSFVLKGINRANSVSWNPHKMLGAPL-QCSILLIKEK  180 (448)
Q Consensus       139 ~~~~~~~~~~~~~~~~aD~~~~s~hK~l~~P~-g~G~l~vr~~  180 (448)
                      --....+.....++ ..|++++  .|.+++-+ ..|.++.+++
T Consensus       261 GRtG~~~a~~~~gv-~PDi~t~--gK~lggG~~Pigav~~~~~  300 (451)
T PRK06062        261 GRTGKWFAIEHFGV-VPDLITF--AKGVNSGYVPLGGVAISEA  300 (451)
T ss_pred             CcCcHHHHHHhcCC-CCCeeee--chhhhcCCcCcEEEEEcHH
Confidence            11111111112244 3687764  79887632 4677777663

>PRK08593 4-aminobutyrate aminotransferase; Provisional

Probab=99.27  E-value=1.8e-08  Score=104.82  Aligned_cols=162  Identities=16%  Similarity=0.122  Sum_probs=94.9

Q ss_pred             cEEEeCcHHHHHHHHHHHHHHhcCCcccccCCCCCCCeEEEecCCCchHHHHHHHHhCCC----------CCcEEEEecC
Q psy14299          4 KPFLLPGGSISNMYSICLARYRLDPDTKRKGLSHLPPLCMFTSEDSHYSMLKAAHWLGIG----------MDNVIRVKTN   73 (448)
Q Consensus         4 ~g~~t~ggT~an~~al~~a~~~~~~~~~~~G~~~~~~~~Vl~~~~~H~s~~~~~~~~g~~----------~~~v~~v~~~   73 (448)
                      .++|+++||+||..|+..||...       |    ...+|......|-...-+..+.+..          ...+..+|.+
T Consensus       105 ~v~f~~SGseA~e~AiklAr~~t-------g----r~~ii~~~~~YHG~t~~als~s~~~~~~~~~~~~~~~~~~~~~~p  173 (445)
T PRK08593        105 RVTFGLSGSDANDGIIKFARAYT-------G----RPYIISFTNAYHGSTYGSLSMSGISLNMRRKYGPLLPGFVHIPFP  173 (445)
T ss_pred             EEEECCchHHHHHHHHHHHHHhh-------C----CCeEEEECCCcCCCcHHHHhhcCCCcccccCCCCCCCCcEEeCCC
Confidence            57899999999999999998752       1    2334555666776655555444311          0123444433


Q ss_pred             CCCC-----cCH-------HHHHHHHHHhhhcCCCcEEEEEeccCCccccccC----HHHHHHHHHHcCCEEEEeccccc
Q psy14299         74 ERGQ-----MIC-------SFLEQTIQTSLAEKKIPLFVNATAGTTVLGAFDP----LDEIATVCEKYDLWMHVDACWGG  137 (448)
Q Consensus        74 ~~g~-----id~-------e~Le~~l~~~~~~~~~~~lVv~~~~~t~tG~~~~----l~~I~~ia~~~g~~l~VD~A~~~  137 (448)
                      ...+     .+.       +++++.+++.. .+..+.+|++.-.....|.+.|    +++|.++|++||+++++|+++.+
T Consensus       174 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~iAavI~EPv~g~gG~~~~~~~yl~~l~~lc~~~g~llI~DEv~tg  252 (445)
T PRK08593        174 DKYRGMYEEPDANFVEEYLAPLKEMFEKYL-PADEVACIVIETIQGDGGLLEPVPGYFEALYKFCREHGILFAVDDIQQG  252 (445)
T ss_pred             ccccccccCCcHHHHHHHHHHHHHHHHhhc-CCCceEEEEEccccCCCCCcCCCHHHHHHHHHHHHHcCCEEEEechhhC
Confidence            2111     122       33444343210 1235667777777777788777    99999999999999999999753


Q ss_pred             ccccccchhhhhcCCCCccEEEECCccccCCCCceEEEEEecc
Q psy14299        138 SLIFSEKYSFVLKGINRANSVSWNPHKMLGAPLQCSILLIKEK  180 (448)
Q Consensus       138 ~~~~~~~~~~~~~~~~~aD~~~~s~hK~l~~P~g~G~l~vr~~  180 (448)
                      .-.....+.....++ ..|+++  ..|.+++-...|.+..+++
T Consensus       253 ~GrtG~~~a~~~~gv-~pDi~t--~gK~l~~G~p~gav~~~~~  292 (445)
T PRK08593        253 LGRTGKWSSISHFNI-TPDLMS--FGKSLAGGMPMSAIVGRKE  292 (445)
T ss_pred             CCcCchHHHHHhcCC-CCCEee--ecccccCCcccEEEEEcHH
Confidence            211111011111133 257665  4787764344677777543

>PRK05639 4-aminobutyrate aminotransferase; Provisional

Probab=99.26  E-value=6.8e-09  Score=108.23  Aligned_cols=163  Identities=13%  Similarity=0.063  Sum_probs=94.7

Q ss_pred             cEEEeCcHHHHHHHHHHHHHHhcCCcccccCCCCCCCeEEEecCCCchHHHHHHHHhCC--------C--CCcEEEEecC
Q psy14299          4 KPFLLPGGSISNMYSICLARYRLDPDTKRKGLSHLPPLCMFTSEDSHYSMLKAAHWLGI--------G--MDNVIRVKTN   73 (448)
Q Consensus         4 ~g~~t~ggT~an~~al~~a~~~~~~~~~~~G~~~~~~~~Vl~~~~~H~s~~~~~~~~g~--------~--~~~v~~v~~~   73 (448)
                      .++|+++||+||-.|+..||..-       |    ...+|-.....|-...-+..+.+.        .  ...+..+|.+
T Consensus       115 ~v~f~~SGsEA~e~AlklAr~~t-------g----r~~ii~~~~~yHG~t~~a~s~~~~~~~~~~~~~~~~~~~~~~p~~  183 (457)
T PRK05639        115 KVLFGLSGSDAVDMAIKVSKFST-------R----RPWILAFIGAYHGQTLGATSVAAFQSSQKRGFSPLMPNVVWIPYP  183 (457)
T ss_pred             EEEEeCchHHHHHHHHHHHHHhc-------C----CCeEEEECCCcCCccHHHHHHcCCCcccccCCCCCCCCceEeCCC
Confidence            47999999999999999998751       1    223444455566554444443331        0  1124455543


Q ss_pred             CCCC--------cCHHH--------HHHHHHHhhhcCCCcEEEEEeccCCccccccC----HHHHHHHHHHcCCEEEEec
Q psy14299         74 ERGQ--------MICSF--------LEQTIQTSLAEKKIPLFVNATAGTTVLGAFDP----LDEIATVCEKYDLWMHVDA  133 (448)
Q Consensus        74 ~~g~--------id~e~--------Le~~l~~~~~~~~~~~lVv~~~~~t~tG~~~~----l~~I~~ia~~~g~~l~VD~  133 (448)
                      ...+        -|+++        +++.+......+.+..+|++.-.....|.+.|    +++|.++|++||+++++|+
T Consensus       184 ~~~~~~~~~~~~~~~~~~~~~~~~~le~~l~~~~~~~~~iAAvI~EPiqg~gG~~~p~~~yl~~l~~lc~~~g~llI~DE  263 (457)
T PRK05639        184 NPYRNPWGINGYEEPDELINRFLDYLENYVFSHVVPPDEVAALFAEPIQGDAGIVVPPENFFKELKKLLDEHGILLVMDE  263 (457)
T ss_pred             ccccccccccccCCHHHHHHHHHHHHHHHHHHhhcCCCceEEEEECCccCCCCCcCCCHHHHHHHHHHHHHcCCEEEEec
Confidence            2111        12332        33333211011234566777666555666554    8999999999999999999


Q ss_pred             ccccccccccchhhhhcCCCCccEEEECCccccCCCCceEEEEEecc
Q psy14299        134 CWGGSLIFSEKYSFVLKGINRANSVSWNPHKMLGAPLQCSILLIKEK  180 (448)
Q Consensus       134 A~~~~~~~~~~~~~~~~~~~~aD~~~~s~hK~l~~P~g~G~l~vr~~  180 (448)
                      ++.+.-....-+.....++ ..|+++  ..|.+++-.+.|.+..+++
T Consensus       264 v~tG~GrtG~~~a~~~~gv-~PDiv~--~gK~l~gG~pi~av~~~~~  307 (457)
T PRK05639        264 VQTGIGRTGKWFASEWFEV-KPDLII--FGKGVASGMGLSGVIGRKE  307 (457)
T ss_pred             hhhccCcCchHHHHHhcCC-CCCEEE--echhhcCCCcceeEEehHH
Confidence            9874211111111112234 379888  4898875566788777654

>PRK06105 aminotransferase; Provisional

Probab=99.25  E-value=6.6e-09  Score=108.49  Aligned_cols=166  Identities=19%  Similarity=0.176  Sum_probs=96.3

Q ss_pred             cEEEeCcHHHHHHHHHHHHHHhcCCcccccCCCCCCCeEEEecCCCchHHHHHHHHhCCCC---------CcEEEEecCC
Q psy14299          4 KPFLLPGGSISNMYSICLARYRLDPDTKRKGLSHLPPLCMFTSEDSHYSMLKAAHWLGIGM---------DNVIRVKTNE   74 (448)
Q Consensus         4 ~g~~t~ggT~an~~al~~a~~~~~~~~~~~G~~~~~~~~Vl~~~~~H~s~~~~~~~~g~~~---------~~v~~v~~~~   74 (448)
                      -++|+++||+||-.|+..++....    ..|.+ ....+|......|-....+..+.+...         ..+..+|.+.
T Consensus       111 ~v~f~~SGseAve~AlKlar~~~~----~~g~t-~r~~il~~~~~yHG~t~~a~s~t~~~~~~~~~~~~~~~~~~~~~p~  185 (460)
T PRK06105        111 KVFFTNSGSEANDTVVKLVWYYNN----ALGRP-EKKKIISRQRGYHGVTIASASLTGLPNNHRSFDLPLDRILHTGCPH  185 (460)
T ss_pred             EEEEeCCcHHHHHHHHHHHHHHHH----hcCCC-CCcEEEEecCccCCcchhheeccCCcccccccCCCCCCCEEcCCCc
Confidence            478999999999999999875411    11211 123345556666765544433332210         1123333221


Q ss_pred             CCC-------------cCHHHHHHHHHHhhhcCCCcEEEEEeccCCccccccC----HHHHHHHHHHcCCEEEEecccc-
Q psy14299         75 RGQ-------------MICSFLEQTIQTSLAEKKIPLFVNATAGTTVLGAFDP----LDEIATVCEKYDLWMHVDACWG-  136 (448)
Q Consensus        75 ~g~-------------id~e~Le~~l~~~~~~~~~~~lVv~~~~~t~tG~~~~----l~~I~~ia~~~g~~l~VD~A~~-  136 (448)
                      ..+             -..+++++.+...  ...++.+|++.-.....|.+.|    +++|.++|++||+++++|+.+. 
T Consensus       186 ~~~~~~~~~~~~~~~~~~~~~le~~~~~~--~~~~iAavIvEPiqg~gG~~~~~~~yl~~lr~lc~~~~~llI~DEv~tG  263 (460)
T PRK06105        186 YYRFGLPGESEEAFATRLANELEALILAE--GPDTIAAFIGEPVMGAGGVIVPPKTYWEKIQAVLRKYDILLVADEVICG  263 (460)
T ss_pred             ccccccCCCChHHHHHHHHHHHHHHHHHc--CCCceEEEEEccccCCCCCccCCHHHHHHHHHHHHHcCCeEEEeccccC
Confidence            111             1245677776431  1234667777777777788877    9999999999999999999984 


Q ss_pred             cccccccchhhhhcCCCCccEEEECCccccCCC-CceEEEEEecc
Q psy14299        137 GSLIFSEKYSFVLKGINRANSVSWNPHKMLGAP-LQCSILLIKEK  180 (448)
Q Consensus       137 ~~~~~~~~~~~~~~~~~~aD~~~~s~hK~l~~P-~g~G~l~vr~~  180 (448)
                      .|-. ..-+.....++ ..|++++  .|.+++- ...|.+..+++
T Consensus       264 ~GRt-G~~f~~~~~~v-~PDi~~~--gK~lggG~~P~~av~~~~~  304 (460)
T PRK06105        264 FGRT-GNMFGCETFGI-KPDILVM--SKQLSSSYQPLSAVLMNEK  304 (460)
T ss_pred             CCcC-chhhhHHhcCC-CCCeeee--ecccccCcccceEEEEcHH
Confidence            4332 11111111233 3687765  6877653 24666667553

>PRK12389 glutamate-1-semialdehyde aminotransferase; Provisional

Probab=99.25  E-value=1.4e-08  Score=105.13  Aligned_cols=154  Identities=17%  Similarity=0.096  Sum_probs=99.6

Q ss_pred             cEEEeCcHHHHHHHHHHHHHHhcCCcccccCCCCCCCeEEEecCCCchHHHHHHHHhCCCC----------------CcE
Q psy14299          4 KPFLLPGGSISNMYSICLARYRLDPDTKRKGLSHLPPLCMFTSEDSHYSMLKAAHWLGIGM----------------DNV   67 (448)
Q Consensus         4 ~g~~t~ggT~an~~al~~a~~~~~~~~~~~G~~~~~~~~Vl~~~~~H~s~~~~~~~~g~~~----------------~~v   67 (448)
                      .++|+++||+||-.|+..||...       |    ...+|......|-...-+....+...                ..+
T Consensus       111 ~v~f~~sGseA~e~AlklAr~~t-------g----r~~ii~~~~~yHG~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  179 (428)
T PRK12389        111 KVRFVNSGTEAVMTTIRVARAYT-------G----RTKIIKFAGCYHGHSDLVLVAAGSGPSTLGTPDSAGVPKSIAQEV  179 (428)
T ss_pred             EEEEeCCHHHHHHHHHHHHHHhh-------C----CCEEEEECCCcCCChHHHHHhcCCcccccCCCCCCCCCCcccCce
Confidence            47899999999999999998752       1    23345555556655444433332110                122


Q ss_pred             EEEecCCCCCcCHHHHHHHHHHhhhcCCCcEEEEEeccCCccccccC----HHHHHHHHHHcCCEEEEeccccccccccc
Q psy14299         68 IRVKTNERGQMICSFLEQTIQTSLAEKKIPLFVNATAGTTVLGAFDP----LDEIATVCEKYDLWMHVDACWGGSLIFSE  143 (448)
Q Consensus        68 ~~v~~~~~g~id~e~Le~~l~~~~~~~~~~~lVv~~~~~t~tG~~~~----l~~I~~ia~~~g~~l~VD~A~~~~~~~~~  143 (448)
                      ..+|.+     |++.+++.+++.   +..+.+|++.-.....|.+.|    +++|.++|++||+++++|+.+.+. -...
T Consensus       180 ~~~~~~-----d~~~l~~~l~~~---~~~vaavi~EPv~g~~G~~~p~~~yl~~l~~lc~~~g~llI~DEV~tG~-Rt~~  250 (428)
T PRK12389        180 ITVPFN-----DIEALKEALDKW---GDEVAAVLVEPIVGNFGIVEPKPGFLEAVNELAHEAGALVIYDEVITAF-RFMY  250 (428)
T ss_pred             EEcCCC-----CHHHHHHHHHhc---CCcEEEEEEeCCCCCCCCcCCCHHHHHHHHHHHHHcCCEEEEEcccccc-ccCc
Confidence            333332     789999988642   234667888777777888888    999999999999999999998865 2111


Q ss_pred             chhhhhcCCCCccEEEECCccccCCCCceEEEEEecc
Q psy14299        144 KYSFVLKGINRANSVSWNPHKMLGAPLQCSILLIKEK  180 (448)
Q Consensus       144 ~~~~~~~~~~~aD~~~~s~hK~l~~P~g~G~l~vr~~  180 (448)
                      .+.....++ ..|.+++  -|.+++-...|.+..+++
T Consensus       251 ~~a~~~~gv-~PDivt~--gK~lggG~Pi~av~~~~~  284 (428)
T PRK12389        251 GGAQDLLGV-EPDLTAL--GKIIGGGLPIGAYGGRKD  284 (428)
T ss_pred             chhhHHhCC-CCCeeee--chhhcCCCceeEEeEHHH
Confidence            111111233 3687654  788776455777766543

>PRK06777 4-aminobutyrate aminotransferase; Provisional

Probab=99.24  E-value=9.3e-09  Score=106.30  Aligned_cols=161  Identities=13%  Similarity=0.130  Sum_probs=93.7

Q ss_pred             cEEEeCcHHHHHHHHHHHHHHhcCCcccccCCCCCCCeEEEecCCCchHHHHHHHHhCCC----------CCcEEEEecC
Q psy14299          4 KPFLLPGGSISNMYSICLARYRLDPDTKRKGLSHLPPLCMFTSEDSHYSMLKAAHWLGIG----------MDNVIRVKTN   73 (448)
Q Consensus         4 ~g~~t~ggT~an~~al~~a~~~~~~~~~~~G~~~~~~~~Vl~~~~~H~s~~~~~~~~g~~----------~~~v~~v~~~   73 (448)
                      ..+|+++||+|+-.|+..||...       |    ...+|-.....|-...-+..+.+..          ...+..++.+
T Consensus       103 ~~~f~~sGseA~e~AlklAr~~t-------g----r~~ii~~~~~yHG~t~~~~s~t~~~~~~~~~~~~~~~~~~~~~~p  171 (421)
T PRK06777        103 KTAFFTTGAEAVENAVKIARAYT-------G----RPGVIAFGGAFHGRTLLTMALTGKVAPYKVGFGPFPGSIFHALYP  171 (421)
T ss_pred             eEEEeCCcHHHHHHHHHHHHHhh-------C----CCeEEEEcCCcCCccHHHHhhcCCCcccccCCCCCCCCcEEcCCC
Confidence            47899999999999999998752       1    2234445555665554444433310          0112233322


Q ss_pred             CCC-----CcCHHHHHHHHHHhhhcCCCcEEEEEeccCCcccc-ccC---HHHHHHHHHHcCCEEEEecccccccccccc
Q psy14299         74 ERG-----QMICSFLEQTIQTSLAEKKIPLFVNATAGTTVLGA-FDP---LDEIATVCEKYDLWMHVDACWGGSLIFSEK  144 (448)
Q Consensus        74 ~~g-----~id~e~Le~~l~~~~~~~~~~~lVv~~~~~t~tG~-~~~---l~~I~~ia~~~g~~l~VD~A~~~~~~~~~~  144 (448)
                      ...     .-+++.+++.+++.. .+..+.+|++.-.....|. +.|   +++|.++|++||+++++|+++.+.-.....
T Consensus       172 ~~~~~~~~~~~~~~l~~~~~~~~-~~~~iaavi~Epv~~~~G~~~~~~~~l~~l~~lc~~~g~llI~DEv~tg~gr~g~~  250 (421)
T PRK06777        172 NELHGVSVEEALSSVERLFKADI-APDQVAAILLEPIQGEGGFNVAPPEFMSALRTLCDEHGILLIADEVQTGFARTGKL  250 (421)
T ss_pred             ccccCcCHHHHHHHHHHHHHhcc-CCCceEEEEECCccCCCCCccCCHHHHHHHHHHHHHcCCEEEEechhhCCccCCch
Confidence            111     123566777775311 1234566777666666674 344   999999999999999999998753221111


Q ss_pred             hhhhhcCCCCccEEEECCccccCCCCceEEEEEec
Q psy14299        145 YSFVLKGINRANSVSWNPHKMLGAPLQCSILLIKE  179 (448)
Q Consensus       145 ~~~~~~~~~~aD~~~~s~hK~l~~P~g~G~l~vr~  179 (448)
                      +.....++ ..|++  +..|.+++-..+|.+..++
T Consensus       251 ~~~~~~~~-~pDiv--~~sK~l~~G~pigav~~~~  282 (421)
T PRK06777        251 FAMEYYDV-KPDLI--TMAKSLGGGMPISAVVGRA  282 (421)
T ss_pred             hhhhhcCC-CCCEE--eeehhhcCCCceEEEEEcH
Confidence            11111122 35765  4689887434577777754

>TIGR02617 tnaA_trp_ase tryptophanase, leader peptide-associated

Probab=99.24  E-value=9.1e-10  Score=111.54  Aligned_cols=157  Identities=14%  Similarity=0.103  Sum_probs=97.6

Q ss_pred             EEEeCcHHHHHHHHHHHHHHhcCCcccccCCCCCCCeEEEe-------cCCCchHHH-HHHHHhCCCCCcEEEEe-----
Q psy14299          5 PFLLPGGSISNMYSICLARYRLDPDTKRKGLSHLPPLCMFT-------SEDSHYSML-KAAHWLGIGMDNVIRVK-----   71 (448)
Q Consensus         5 g~~t~ggT~an~~al~~a~~~~~~~~~~~G~~~~~~~~Vl~-------~~~~H~s~~-~~~~~~g~~~~~v~~v~-----   71 (448)
                      +++|++|++++.++.....++             +++.+.+       +...|+--- -.+.+.|.   .++.++     
T Consensus        92 alpthqGRgaE~Il~~~~~~~-------------~g~e~g~~~~~~~v~hn~~fett~g~a~l~G~---~~~~l~~~ea~  155 (467)
T TIGR02617        92 TIPTHQGRGAEQIYIPVLIKK-------------REQEKGLDRSKMVAFSNYFFDTTQGHSQINGC---TARNVYTKEAF  155 (467)
T ss_pred             EEECCCCchHHHHHHHhhccc-------------ccccccccccccccceEEEEecchHHHHHcCc---eeecccchhhc
Confidence            678999999999998777663             2223332       333444332 33456666   344432     


Q ss_pred             -----cCCCCCcCHHHHHHHHHHhhhcCCCcEEEEEeccCCc-cc---cccCHHHHHHHHHHcCCEEEEecccccc-ccc
Q psy14299         72 -----TNERGQMICSFLEQTIQTSLAEKKIPLFVNATAGTTV-LG---AFDPLDEIATVCEKYDLWMHVDACWGGS-LIF  141 (448)
Q Consensus        72 -----~~~~g~id~e~Le~~l~~~~~~~~~~~lVv~~~~~t~-tG---~~~~l~~I~~ia~~~g~~l~VD~A~~~~-~~~  141 (448)
                           .+.+|.+|+++|+++|++....  +...+..+..+|. -|   .++.++++.++|++||+.+|+|||.-+. +.+
T Consensus       156 ~~~~~~~fkG~~dl~~le~~I~~~g~~--~i~~v~~tlt~N~~GGqpvslenlr~V~~la~~~GIplhLDgARl~nNA~f  233 (467)
T TIGR02617       156 DTGVRYDFKGNFDLEGLERGIEEVGPN--NVPYIVATITCNSAGGQPVSLANLKAVYEIAKKYDIPVVMDSARFAENAYF  233 (467)
T ss_pred             ccccCCCCCCCcCHHHHHHHHhhcCCC--CceeeeeeEEEecCCCEEeCHHHHHHHHHHHHHcCCcEEEEhHHHHHHhhh
Confidence                 2346899999999999863111  1222222222233 34   3466888999999999999999998774 432


Q ss_pred             ccch-----hhhhcC-----CCCccEEEECCccccCCCCceEEEEEecc
Q psy14299        142 SEKY-----SFVLKG-----INRANSVSWNPHKMLGAPLQCSILLIKEK  180 (448)
Q Consensus       142 ~~~~-----~~~~~~-----~~~aD~~~~s~hK~l~~P~g~G~l~vr~~  180 (448)
                      +...     ...+..     .+.+|++++|..|.+++|.|+- +..+++
T Consensus       234 Ik~rE~~a~~~si~eI~rE~~~~aDsvt~slsKglgApvGg~-Lag~d~  281 (467)
T TIGR02617       234 IKQREAEYKNWSIEQITRETYKYADMLAMSAKKDAMVPMGGL-LCFKDD  281 (467)
T ss_pred             hhhcchhhcCCCHHHHHHHhhccCCEEEEEcCCCCCCcccce-EEecch
Confidence            2110     000111     1468999999999999998654 445565

Members of this family belong to the beta-eliminating lyase family (pfam01212) and act as tryptophanase (L-tryptophan indole-lyase). The tryptophanases of this family, as a rule, are found with a tryptophanase leader peptide (TnaC) encoded upstream. Both tryptophanases (4.1.99.1) and tyrosine phenol-lyases (EC 4.1.99.2) are found between trusted and noise cutoffs, but this model captures nearly all tryptophanases for which the leader peptide gene tnaC can be found upstream.

>PRK07678 aminotransferase; Validated

Probab=99.24  E-value=1.6e-08  Score=105.40  Aligned_cols=166  Identities=16%  Similarity=0.158  Sum_probs=94.3

Q ss_pred             cEEEeCcHHHHHHHHHHHHHHhcCCcccccCCCCCCCeEEEecCCCchHHHHHHHHhCCC---------CCcEEEEecCC
Q psy14299          4 KPFLLPGGSISNMYSICLARYRLDPDTKRKGLSHLPPLCMFTSEDSHYSMLKAAHWLGIG---------MDNVIRVKTNE   74 (448)
Q Consensus         4 ~g~~t~ggT~an~~al~~a~~~~~~~~~~~G~~~~~~~~Vl~~~~~H~s~~~~~~~~g~~---------~~~v~~v~~~~   74 (448)
                      .++|+++||+||-.|+..||....    ..|-+ ....+|-.....|-...-+....+..         ...+..+|.+.
T Consensus       107 ~v~f~~sGseA~e~AlklAr~~t~----~~g~~-~r~~ii~~~~~yHG~t~~als~~~~~~~~~~~~~~~~~~~~~~~~~  181 (451)
T PRK07678        107 VIFFSNSGSEANETAFKIARQYHA----QKGEP-HRYKFISRYRAYHGNSMGALAATGQAQRKYKYEPLAPGFLHVPPPD  181 (451)
T ss_pred             EEEEeCCcHHHHHHHHHHHHHHHH----hcCCC-CCcEEEEECCCcCCccHHHhhcCCCcccccccCCCCCCCEEeCCCc
Confidence            478999999999999999987521    11211 12234444555565444343332211         01233343322


Q ss_pred             CCCc---------C---HHHHHHHHHHhhhcCCCcEEEEEeccCCccccccC----HHHHHHHHHHcCCEEEEeccccc-
Q psy14299         75 RGQM---------I---CSFLEQTIQTSLAEKKIPLFVNATAGTTVLGAFDP----LDEIATVCEKYDLWMHVDACWGG-  137 (448)
Q Consensus        75 ~g~i---------d---~e~Le~~l~~~~~~~~~~~lVv~~~~~t~tG~~~~----l~~I~~ia~~~g~~l~VD~A~~~-  137 (448)
                      ..+.         |   .+.+++.++..  .+..+.+|++.-.....|.+.|    ++++.++|++||+++++|+.+.+ 
T Consensus       182 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~--~~~~iAAvi~EPiqg~gG~~~~~~~fl~~lr~lc~~~g~llI~DEV~tGf  259 (451)
T PRK07678        182 CYRMPGIESEDIYDLECVKEIDRVMTWE--LSETIAAVIMEPIITGGGVLMPPQDYMKAVKEICQKHGALLISDEVICGF  259 (451)
T ss_pred             cccccccCChHHHHHHHHHHHHHHHHhc--CCCceEEEEEccccCCCCcccCCHHHHHHHHHHHHHcCCEEEEeehhhcC
Confidence            1111         1   22355556421  1234566777666555677655    89999999999999999998854 


Q ss_pred             ccccccchhhhhcCCCCccEEEECCccccCCC-CceEEEEEecc
Q psy14299        138 SLIFSEKYSFVLKGINRANSVSWNPHKMLGAP-LQCSILLIKEK  180 (448)
Q Consensus       138 ~~~~~~~~~~~~~~~~~aD~~~~s~hK~l~~P-~g~G~l~vr~~  180 (448)
                      |-. ...+.....++ ..|++++  -|.+++- ..+|.+.++++
T Consensus       260 GRt-G~~~~~~~~gv-~PDivt~--gK~lggG~~Pi~av~~~~~  299 (451)
T PRK07678        260 GRT-GKAFGFMNYGV-KPDIITM--AKGITSAYLPLSATAVKKE  299 (451)
T ss_pred             CcC-chhHHHHhcCC-CCCEEEe--ecccccCCcceeEEEEcHH
Confidence            331 11111111234 3788876  7887754 35788777664

>KOG0634|consensus

Probab=99.24  E-value=9.2e-09  Score=102.09  Aligned_cols=122  Identities=20%  Similarity=0.184  Sum_probs=98.7

Q ss_pred             CccEEEeCcHHHHHHHHHHHHHHhcCCcccccCCCCCCCeEEEecCCCchHHHHHHHHhCCCCCcEEEEecCCCCCcCHH
Q psy14299          2 NLKPFLLPGGSISNMYSICLARYRLDPDTKRKGLSHLPPLCMFTSEDSHYSMLKAAHWLGIGMDNVIRVKTNERGQMICS   81 (448)
Q Consensus         2 ~~~g~~t~ggT~an~~al~~a~~~~~~~~~~~G~~~~~~~~Vl~~~~~H~s~~~~~~~~g~~~~~v~~v~~~~~g~id~e   81 (448)
                      |++.++|+|.|.+...++.+++++              ++.|++...+..+-....+..|+   +++.|+.|.+| +++|
T Consensus       124 ~wdiiit~G~t~~l~~~l~~~~N~--------------gd~vlie~~ty~~AL~s~~a~gv---~~ipv~md~~G-i~pE  185 (472)
T KOG0634|consen  124 NWDIIITNGNTDGLFKVLRTLINR--------------GDHVLIEEYTYPSALQSMEALGV---KIIPVKMDQDG-IDPE  185 (472)
T ss_pred             CceEEEecCCchHHHHHHHHhhcC--------------CCceEEecccchHHHHhccccCc---eEEeccccCCC-CCHH
Confidence            568899999999999999998884              56799999999999999998887   78888887555 7999


Q ss_pred             HHHHHHHHhhhc---CCCcEEE-EEeccCCccccccCH---HHHHHHHHHcCCEEEEeccccccccc
Q psy14299         82 FLEQTIQTSLAE---KKIPLFV-NATAGTTVLGAFDPL---DEIATVCEKYDLWMHVDACWGGSLIF  141 (448)
Q Consensus        82 ~Le~~l~~~~~~---~~~~~lV-v~~~~~t~tG~~~~l---~~I~~ia~~~g~~l~VD~A~~~~~~~  141 (448)
                      .|++.+....-.   .++|.++ .+-.+.|+||..-.+   ++|.++||+|++.++-|.-|....+.
T Consensus       186 ~l~~il~~w~~~~~k~~~p~vlYTIPTgqNPTG~tls~errk~iy~LArKyDfLIVeDdpYy~Lq~~  252 (472)
T KOG0634|consen  186 SLEEILSNWKPGSYKKPKPHVLYTIPTGQNPTGNTLSLERRKKIYQLARKYDFLIVEDDPYYFLQMN  252 (472)
T ss_pred             HHHHHHhcCCcccccCCCCeEEEeCcCCCCCCCCccCHHHHHHHHHHHHHcCEEEEecCccceeecc
Confidence            999999865433   1235443 445678899977665   67999999999999999988876653

>PRK00615 glutamate-1-semialdehyde aminotransferase; Provisional

Probab=99.23  E-value=6.6e-09  Score=107.55  Aligned_cols=154  Identities=14%  Similarity=0.118  Sum_probs=92.6

Q ss_pred             cEEEeCcHHHHHHHHHHHHHHhcCCcccccCCCCCCCeEEEecCCCchHH---HHHHHHhCCC--C-----------CcE
Q psy14299          4 KPFLLPGGSISNMYSICLARYRLDPDTKRKGLSHLPPLCMFTSEDSHYSM---LKAAHWLGIG--M-----------DNV   67 (448)
Q Consensus         4 ~g~~t~ggT~an~~al~~a~~~~~~~~~~~G~~~~~~~~Vl~~~~~H~s~---~~~~~~~g~~--~-----------~~v   67 (448)
                      .++|+++||+|+..|+..||..-       |    ...+|-.....|-..   ..+....+-.  .           ...
T Consensus       112 ~v~f~~SGsEA~e~AiklAr~~t-------g----r~~ii~~~~~yHG~td~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  180 (433)
T PRK00615        112 KIRFVSSGTEATMTAVRLARGIT-------G----RSIIIKFLGCYHGHADTLLQGISFSETSLDTLTHLVDTDLAHPLT  180 (433)
T ss_pred             EEEEeCchHHHHHHHHHHHHHhh-------C----CCEEEEEcCccCCCCcccCcccccCCCCcCcCCCCCCCCCCCCCe
Confidence            57999999999999999998752       1    222333344445422   1111111100  0           001


Q ss_pred             EEEecCCCCCcCHHHHHHHHHHhhhcCCCcEEEEEeccCCccccccCH----HHHHHHHHHcCCEEEEeccccccccccc
Q psy14299         68 IRVKTNERGQMICSFLEQTIQTSLAEKKIPLFVNATAGTTVLGAFDPL----DEIATVCEKYDLWMHVDACWGGSLIFSE  143 (448)
Q Consensus        68 ~~v~~~~~g~id~e~Le~~l~~~~~~~~~~~lVv~~~~~t~tG~~~~l----~~I~~ia~~~g~~l~VD~A~~~~~~~~~  143 (448)
                      ..++.+     |++++++.+++.   +.++.+|++.-...+.|.+.|.    ++|.++|++||+++++|+++.+. -...
T Consensus       181 ~~~~~~-----d~~~l~~~l~~~---~~~~aavI~Epv~~~~G~~~p~~~yl~~l~~lc~~~g~llI~DEv~tG~-R~G~  251 (433)
T PRK00615        181 LSLPYN-----DFQIFQTVMNSL---GHRVAGVIFEPICANMGVVLPKPGFIEGIIQTCRRTGSLSIMDEVVTGF-RVAQ  251 (433)
T ss_pred             EeCCCC-----CHHHHHHHHHhc---CCceEEEEECCCCCCCCcccCCHHHHHHHHHHHHHcCCEEEEEcccccc-cccH
Confidence            111221     789999998642   2346678888777878888774    59999999999999999998532 2111


Q ss_pred             chhhhhcCCCCccEEEECCccccCCCCceEEEEEecc
Q psy14299        144 KYSFVLKGINRANSVSWNPHKMLGAPLQCSILLIKEK  180 (448)
Q Consensus       144 ~~~~~~~~~~~aD~~~~s~hK~l~~P~g~G~l~vr~~  180 (448)
                      .+.....++ ..|+++  ..|.+++-...|++..+++
T Consensus       252 ~ga~~~~gv-~PDi~~--~gK~lggG~p~~av~~~~~  285 (433)
T PRK00615        252 GGAAAIYHV-KPDITV--YGKILGGGLPAAAVVAHKS  285 (433)
T ss_pred             hHHHHhcCC-CCCeEE--EcccccCCcceeeeeecHH
Confidence            111111233 368776  5898874344666666554

>PLN00144 acetylornithine transaminase

Probab=99.23  E-value=6.9e-09  Score=105.95  Aligned_cols=160  Identities=18%  Similarity=0.113  Sum_probs=95.7

Q ss_pred             cEEEeCcHHHHHHHHHHHHHHhcCCcccccCCCCC------CCeEEEecCCCchHHHHHHHHhCCC---------CCcEE
Q psy14299          4 KPFLLPGGSISNMYSICLARYRLDPDTKRKGLSHL------PPLCMFTSEDSHYSMLKAAHWLGIG---------MDNVI   68 (448)
Q Consensus         4 ~g~~t~ggT~an~~al~~a~~~~~~~~~~~G~~~~------~~~~Vl~~~~~H~s~~~~~~~~g~~---------~~~v~   68 (448)
                      .++|+++||+|+-.|+..+|....    +.|....      ...+|.+....|-...-+....+-.         ...+.
T Consensus        74 ~v~f~~sGseA~e~AlklAr~~~~----~~~~~~~~~~~~~r~~ii~~~~~yHG~t~~~~s~~~~~~~~~~~~~~~~~~~  149 (382)
T PLN00144         74 RVFFCNSGTEANEAAIKFARKYQR----VRAPDKKDPAASSATEFVSFSNSFHGRTLGALALTSKEQYRTPFEPLMPGVT  149 (382)
T ss_pred             eEEEeCCcHHHHHHHHHHHHHHHh----ccCCCCccccccccceEEEECCCcccccHHHHhcCCCccccccCCCCCCCeE
Confidence            478999999999999999986521    1111000      1234555556665544444433321         01123


Q ss_pred             EEecCCCCCcCHHHHHHHHHHhhhcCCCcEEEEEeccCCccccc--cC--HHHHHHHHHHcCCEEEEecccccccccccc
Q psy14299         69 RVKTNERGQMICSFLEQTIQTSLAEKKIPLFVNATAGTTVLGAF--DP--LDEIATVCEKYDLWMHVDACWGGSLIFSEK  144 (448)
Q Consensus        69 ~v~~~~~g~id~e~Le~~l~~~~~~~~~~~lVv~~~~~t~tG~~--~~--l~~I~~ia~~~g~~l~VD~A~~~~~~~~~~  144 (448)
                      .+|.+     |++.+++.+++     .++.+|++.-..++.|..  .+  +++|.++|++||+++++|+++.+.......
T Consensus       150 ~~~~~-----d~~~l~~~~~~-----~~~aavi~eP~q~~gg~~~~~~~~~~~l~~l~~~~g~llI~DEv~tg~gr~g~~  219 (382)
T PLN00144        150 FVEYG-----NLEAARKLIQK-----GKTAAVFVEPVQGEGGIYPATKEFLQGLRALCDEAGALLVFDEVQCGLGRTGYL  219 (382)
T ss_pred             EeCCC-----CHHHHHHhcCC-----CCeEEEEEccccCCCCCccCCHHHHHHHHHHHHHcCCEEEEechhhCCCccchH
Confidence            33332     78999988843     246677776555554443  33  899999999999999999998754221111


Q ss_pred             hhhhhcCCCCccEEEECCccccCCCCceEEEEEecc
Q psy14299        145 YSFVLKGINRANSVSWNPHKMLGAPLQCSILLIKEK  180 (448)
Q Consensus       145 ~~~~~~~~~~aD~~~~s~hK~l~~P~g~G~l~vr~~  180 (448)
                      +.....++ ..|  +.+..|.+++-..+|+++.+++
T Consensus       220 ~~~~~~~~-~PD--i~t~sK~l~~G~pig~v~~~~~  252 (382)
T PLN00144        220 WAHEAYGV-EPD--IMTLAKPLAGGLPIGAVLVTEK  252 (382)
T ss_pred             hhhhhcCC-CCC--EEEecccccCCcceEEEEEcHH
Confidence            11112233 257  4455898875566788777543

>TIGR00709 dat 2,4-diaminobutyrate 4-transaminases

Probab=99.23  E-value=1.3e-08  Score=105.86  Aligned_cols=162  Identities=21%  Similarity=0.129  Sum_probs=92.7

Q ss_pred             EEEeCcHHHHHHHHHHHHHHhcCCcccccCCCCCCCeEEEecCCCchHHHHHHHHhCCC---------CCcEEEEecCCC
Q psy14299          5 PFLLPGGSISNMYSICLARYRLDPDTKRKGLSHLPPLCMFTSEDSHYSMLKAAHWLGIG---------MDNVIRVKTNER   75 (448)
Q Consensus         5 g~~t~ggT~an~~al~~a~~~~~~~~~~~G~~~~~~~~Vl~~~~~H~s~~~~~~~~g~~---------~~~v~~v~~~~~   75 (448)
                      .+++++|||||-.|+..||..-       |    ...+|......|-...-+....+..         ...+..+|.+..
T Consensus       105 ~f~~~sGsEA~e~AlklAr~~t-------g----r~~Ii~~~~~yHG~t~~~~s~t~~~~~~~~~~~~~~~~~~~~~~~~  173 (442)
T TIGR00709       105 QFPGPSGADAVEAAIKLAKTYT-------G----RTNVISFSGGFHGMTIGALAVTGNLFAKNAVGMLMPGVQFMPYPHE  173 (442)
T ss_pred             EEeCCCHHHHHHHHHHHHHHhc-------C----CCeEEEEcCCcCCchHHHHhhcCChhhhccCCCCCCCcEEeCCCcc
Confidence            3456999999999999999751       1    2334555666676655555444310         112333443221


Q ss_pred             CCc--------CHHHHHHHHHHhhh----cCCCcEEEEEeccCCccccccC----HHHHHHHHHHcCCEEEEeccccccc
Q psy14299         76 GQM--------ICSFLEQTIQTSLA----EKKIPLFVNATAGTTVLGAFDP----LDEIATVCEKYDLWMHVDACWGGSL  139 (448)
Q Consensus        76 g~i--------d~e~Le~~l~~~~~----~~~~~~lVv~~~~~t~tG~~~~----l~~I~~ia~~~g~~l~VD~A~~~~~  139 (448)
                      .+.        +.+.+.+.+++..+    ....+..|++.-.....|.+.|    +++|.++|++||+++++|+.+.+.-
T Consensus       174 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iaavi~Epi~g~~G~~~~~~~yl~~lr~lc~~~g~llI~DEV~tGfG  253 (442)
T TIGR00709       174 YRCPFGIGGEAGSNASIEYFENFIEDVESGVDKPAAVILEAIQGEGGVVAAPSEWLQKIREVTRKHDIKLILDEVQAGFG  253 (442)
T ss_pred             ccccccCCchhHHHHHHHHHHHHHHhhccCCCceEEEEEccccCCCCCccCCHHHHHHHHHHHHHcCCEEEEeccccCCC
Confidence            111        12223232222211    1124566777666666665533    8999999999999999999877532


Q ss_pred             ccccchhhhhcCCCCccEEEECCccccCCCCceEEEEEecc
Q psy14299        140 IFSEKYSFVLKGINRANSVSWNPHKMLGAPLQCSILLIKEK  180 (448)
Q Consensus       140 ~~~~~~~~~~~~~~~aD~~~~s~hK~l~~P~g~G~l~vr~~  180 (448)
                      .....+.....++ ..|.+++  .|.+++-...|.+..+++
T Consensus       254 RtG~~~a~~~~gv-~PDiv~~--gK~l~~G~Pigav~~~~~  291 (442)
T TIGR00709       254 RSGTMFAFEHAGI-EPDFVVM--SKAVGGGLPLAVLLIAPE  291 (442)
T ss_pred             CCCchhHHHHcCC-CCcEEEE--cccccCCcccEEEEEchH
Confidence            2221111111233 3688884  787766456788777654

This family consists of L-diaminobutyric acid transaminases. This general designation covers both 2.6.1.76 (diaminobutyrate-2-oxoglutarate transaminase, which uses glutamate as the amino donor in DABA biosynthesis), and 2.6.1.46 (diaminobutyrate--pyruvate transaminase, which uses alanine as the amino donor). Most members with known function are 2.6.1.76, and at least some annotations as 2.6.1.46 in current databases at time of model revision are incorrect. A distinct branch of this family contains examples of 2.6.1.76 nearly all of which are involved in ectoine biosynthesis. A related enzyme is 4-aminobutyrate aminotransferase (EC 2.6.1.19), also called GABA transaminase. These enzymes all are pyridoxal phosphate-containing class III aminotransferase.

>PLN02482 glutamate-1-semialdehyde 2,1-aminomutase

Probab=99.22  E-value=1.8e-08  Score=105.26  Aligned_cols=154  Identities=13%  Similarity=0.027  Sum_probs=95.2

Q ss_pred             cEEEeCcHHHHHHHHHHHHHHhcCCcccccCCCCCCCeEEEecCCCchHHHHHHHHh-------------CCC---CCcE
Q psy14299          4 KPFLLPGGSISNMYSICLARYRLDPDTKRKGLSHLPPLCMFTSEDSHYSMLKAAHWL-------------GIG---MDNV   67 (448)
Q Consensus         4 ~g~~t~ggT~an~~al~~a~~~~~~~~~~~G~~~~~~~~Vl~~~~~H~s~~~~~~~~-------------g~~---~~~v   67 (448)
                      .+.|+++||||+..|+..||..-.           ...+|-.....|-.........             |+.   ...+
T Consensus       157 ~v~f~~SGsEA~e~AlklAR~~tg-----------r~~Ii~~~g~YHG~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~  225 (474)
T PLN02482        157 MVRFVNSGTEACMGVLRLARAYTG-----------REKIIKFEGCYHGHADSFLVKAGSGVATLGLPDSPGVPKAATSAT  225 (474)
T ss_pred             EEEEeCChHHHHHHHHHHHHHhcC-----------CCEEEEECCccCCCcchhhhhcCCCccccCCCCCCCCCCCCCCCe
Confidence            478999999999999999987521           2223434444554221111100             110   0012


Q ss_pred             EEEecCCCCCcCHHHHHHHHHHhhhcCCCcEEEEEeccCCccccccC----HHHHHHHHHHcCCEEEEeccccccccccc
Q psy14299         68 IRVKTNERGQMICSFLEQTIQTSLAEKKIPLFVNATAGTTVLGAFDP----LDEIATVCEKYDLWMHVDACWGGSLIFSE  143 (448)
Q Consensus        68 ~~v~~~~~g~id~e~Le~~l~~~~~~~~~~~lVv~~~~~t~tG~~~~----l~~I~~ia~~~g~~l~VD~A~~~~~~~~~  143 (448)
                      ..+|.+     |++++++.+++.   +..+.+|++.-...+.|.+.|    +++|.++|++||+++++|+++.+. ....
T Consensus       226 ~~~~~n-----d~~~l~~~l~~~---~~~iAavI~Epv~g~~G~i~p~~~fl~~lr~lc~~~g~lLI~DEV~tGf-R~g~  296 (474)
T PLN02482        226 LTAPYN-----DLEAVKKLFEAN---KGEIAAVILEPVVGNSGFIVPKKEFLEGLREITKENGALLVFDEVMTGF-RIAY  296 (474)
T ss_pred             EEecCC-----ChHHHHHHHHhC---CCceEEEEECCCCCCCCCcCCCHHHHHHHHHHHHHcCCEEEEeccccCe-ecCc
Confidence            333433     789999998642   235667888777777887777    568999999999999999998643 2211


Q ss_pred             chhhhhcCCCCccEEEECCccccCCCCceEEEEEecc
Q psy14299        144 KYSFVLKGINRANSVSWNPHKMLGAPLQCSILLIKEK  180 (448)
Q Consensus       144 ~~~~~~~~~~~aD~~~~s~hK~l~~P~g~G~l~vr~~  180 (448)
                      .+.....++ ..|.+++  -|.+++-..+|.+..+++
T Consensus       297 ~ga~~~~gv-~PDi~t~--gK~lggG~Pigav~g~~e  330 (474)
T PLN02482        297 GGAQEYFGI-TPDLTTL--GKVIGGGLPVGAYGGRRE  330 (474)
T ss_pred             chHhHHhCC-CCCEEEe--cchhhCCCceEEEEEcHH
Confidence            111111233 3687655  798876455788766543

>PRK09221 beta alanine--pyruvate transaminase; Provisional

Probab=99.22  E-value=1.1e-08  Score=106.51  Aligned_cols=166  Identities=14%  Similarity=0.137  Sum_probs=92.8

Q ss_pred             cEEEeCcHHHHHHHHHHHHHHhcCCcccccCCCCCCCeEEEecCCCchHHHHHHHHhCCC---------CCcEEEEecCC
Q psy14299          4 KPFLLPGGSISNMYSICLARYRLDPDTKRKGLSHLPPLCMFTSEDSHYSMLKAAHWLGIG---------MDNVIRVKTNE   74 (448)
Q Consensus         4 ~g~~t~ggT~an~~al~~a~~~~~~~~~~~G~~~~~~~~Vl~~~~~H~s~~~~~~~~g~~---------~~~v~~v~~~~   74 (448)
                      .++|+++||+|+-.|+..+|....    +.|-+ ....+|......|-...-+....|..         ...+..+|.+.
T Consensus       111 ~v~f~~sGseAve~AlklAr~~~~----~~g~~-~r~~ii~~~~~yHG~t~gals~~~~~~~~~~~~~~~~~~~~~~~~~  185 (445)
T PRK09221        111 HVFFTNSGSESVDTALKIALAYHR----ARGQG-TRTRLIGRERGYHGVGFGGISVGGIVNNRKMFGGLLPGVDHLPHTL  185 (445)
T ss_pred             EEEEeCCcHHHHHHHHHHHHHHHH----hcCCC-CCcEEEEECCCcCccchhhhccCCChhhhhccCCCCCCCeEeCCCc
Confidence            478999999999999999987521    01111 12234445555564433322222210         01133343321


Q ss_pred             -C----CC--------cCHHHHHHHHHHhhhcCCCcEEEEEeccCCccccccC----HHHHHHHHHHcCCEEEEeccccc
Q psy14299         75 -R----GQ--------MICSFLEQTIQTSLAEKKIPLFVNATAGTTVLGAFDP----LDEIATVCEKYDLWMHVDACWGG  137 (448)
Q Consensus        75 -~----g~--------id~e~Le~~l~~~~~~~~~~~lVv~~~~~t~tG~~~~----l~~I~~ia~~~g~~l~VD~A~~~  137 (448)
                       .    ..        -..+++++.++..  ...++.+|++.-.....|.+.|    +++|.++|++||+++++|+++.+
T Consensus       186 ~~~~~~~~~~~~~~~~~~~~~l~~~i~~~--~~~~iAavi~Epv~g~~G~~~~~~~yl~~l~~lc~~~g~llI~DEV~tG  263 (445)
T PRK09221        186 DLPENAFSKGQPEHGAELADDLERLVALH--DASTIAAVIVEPMAGSAGVLVPPKGYLQRLREICDKHGILLIFDEVITG  263 (445)
T ss_pred             cccccccCCChHHHHHHHHHHHHHHHHhc--CCCcEEEEEEecccCCCCcccCCHHHHHHHHHHHHHcCCEEEEeehhhC
Confidence             0    00        0135677766531  1135667888888888899888    99999999999999999999853


Q ss_pred             -ccccccchhhhhcCCCCccEEEECCccccCCC-CceEEEEEecc
Q psy14299        138 -SLIFSEKYSFVLKGINRANSVSWNPHKMLGAP-LQCSILLIKEK  180 (448)
Q Consensus       138 -~~~~~~~~~~~~~~~~~aD~~~~s~hK~l~~P-~g~G~l~vr~~  180 (448)
                       |-. ...+.....++ ..|++++  .|.+++- ...|.+..+++
T Consensus       264 ~GRt-G~~~~~~~~gv-~PDi~~~--gK~l~gG~~Pi~av~~~~~  304 (445)
T PRK09221        264 FGRL-GAAFAAERFGV-TPDIITF--AKGLTNGAIPMGAVIASDE  304 (445)
T ss_pred             CCcC-chhhHHHhcCC-CCCEEEe--ccccccCcccceeeEEcHH
Confidence             221 11111111233 2587665  5766431 12555666543

>PRK06149 hypothetical protein; Provisional

Probab=99.22  E-value=1.2e-08  Score=115.54  Aligned_cols=162  Identities=14%  Similarity=0.048  Sum_probs=98.9

Q ss_pred             cEEEeCcHHHHHHHHHHHHHHhcCCcccccCCCCCCCeEEEecCCCchHHHHHHHHhCC----------CCCcEEEEecC
Q psy14299          4 KPFLLPGGSISNMYSICLARYRLDPDTKRKGLSHLPPLCMFTSEDSHYSMLKAAHWLGI----------GMDNVIRVKTN   73 (448)
Q Consensus         4 ~g~~t~ggT~an~~al~~a~~~~~~~~~~~G~~~~~~~~Vl~~~~~H~s~~~~~~~~g~----------~~~~v~~v~~~   73 (448)
                      .++|+++||+||..|+..||...       |    ...+|.+....|-...-+....+.          ....+..++..
T Consensus       643 ~v~f~~SGsEA~e~AlklAr~~t-------g----r~~ii~~~~~yHG~t~ga~~~s~~~~~~~~~~~~~~~~v~~~~~p  711 (972)
T PRK06149        643 TVFLVNSGSEANDLAIRLAWAAS-------G----RRDVVSVLEAYHGWTVATDAVSTSIADNPQALETRPDWVHPVESP  711 (972)
T ss_pred             EEEEeCCchHHHHHHHHHHHHhc-------C----CCeEEEEeCCCCCcChhHhhhcCCccccccccCCCCCCeEEeCCC
Confidence            57999999999999999998752       1    344566666777433222111110          00113334332


Q ss_pred             CCCC--c---C-----HHHHHHHHHHhhhcCCCcEEEEEeccCCccccccC----HHHHHHHHHHcCCEEEEeccc-ccc
Q psy14299         74 ERGQ--M---I-----CSFLEQTIQTSLAEKKIPLFVNATAGTTVLGAFDP----LDEIATVCEKYDLWMHVDACW-GGS  138 (448)
Q Consensus        74 ~~g~--i---d-----~e~Le~~l~~~~~~~~~~~lVv~~~~~t~tG~~~~----l~~I~~ia~~~g~~l~VD~A~-~~~  138 (448)
                      ...+  .   +     .+++++.++.....+.++.+|++.-.....|.+.|    +++|.++|++||+++++|+++ |.|
T Consensus       712 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~iAavI~Epv~g~gG~i~~p~~yL~~l~~lc~~~g~llI~DEV~tGfG  791 (972)
T PRK06149        712 NTYRGRFRGADSAADYVRDVVAQLEELDASGRGLAGFICEPVYGNAGGIALPPGYLQQVYAAVRARGGVCIADEVQVGYG  791 (972)
T ss_pred             cccCCcCCCcccHHHHHHHHHHHHHHHhhcCCceEEEEEcccccCCCcccCCHHHHHHHHHHHHHcCCEEEEEeehhcCC
Confidence            2111  1   2     35666666543333445667777777777788888    999999999999999999998 443


Q ss_pred             cccccc-hhhhhcCCCCccEEEECCccccCCCCceEEEEEecc
Q psy14299        139 LIFSEK-YSFVLKGINRANSVSWNPHKMLGAPLQCSILLIKEK  180 (448)
Q Consensus       139 ~~~~~~-~~~~~~~~~~aD~~~~s~hK~l~~P~g~G~l~vr~~  180 (448)
                      -. ... +.....++ ..|++++  .|.+++-...|++.++++
T Consensus       792 Rt-G~~~~a~e~~gv-~PDivt~--gK~lg~G~Pl~av~~~~~  830 (972)
T PRK06149        792 RL-GHYFWGFEQQGV-VPDIITM--AKGMGNGHPLGAVITRRE  830 (972)
T ss_pred             cc-CccchhhhhcCC-CCCEEEe--cccccCCeeeEEEEEcHH
Confidence            32 110 11111234 3788865  788876455788877664

>TIGR00508 bioA adenosylmethionine-8-amino-7-oxononanoate transaminase

Probab=99.22  E-value=5.8e-09  Score=107.97  Aligned_cols=166  Identities=14%  Similarity=0.089  Sum_probs=91.0

Q ss_pred             cEEEeCcHHHHHHHHHHHHHHhcCCcccccCCCCCCCeEEEecCCCchHHHHHHHHhCCC----------CCcEEEEecC
Q psy14299          4 KPFLLPGGSISNMYSICLARYRLDPDTKRKGLSHLPPLCMFTSEDSHYSMLKAAHWLGIG----------MDNVIRVKTN   73 (448)
Q Consensus         4 ~g~~t~ggT~an~~al~~a~~~~~~~~~~~G~~~~~~~~Vl~~~~~H~s~~~~~~~~g~~----------~~~v~~v~~~   73 (448)
                      .++|+++||+|+-.|+..++....    ..|.+ ....+|......|-...-+..+.+..          ...+..++..
T Consensus       107 ~v~f~~sGseA~e~AlklAr~~~~----~~~~~-~r~~il~~~~~yHG~t~~~~s~~~~~~~~~~~~~~~~~~~~~~~~p  181 (427)
T TIGR00508       107 CVFLADSGSVAVEVALKMALQYWQ----AKGEK-NRQKFLTIRSGYHGDTFGAMSVCDPENSMHSLYKGYLPEQIFAPAP  181 (427)
T ss_pred             EEEEeCCcHHHHHHHHHHHHHHHH----hhCCC-CccEEEEEcCCcCCccHhhhcccCCcccccccccccCCCCeEcCCC
Confidence            578999999999999999987521    01111 12345666666775544333332210          0011222221


Q ss_pred             CC-C-----CcCHHHHHHHHHHhhhcCCCcEEEEEecc-CCccc----cccCHHHHHHHHHHcCCEEEEecccccccccc
Q psy14299         74 ER-G-----QMICSFLEQTIQTSLAEKKIPLFVNATAG-TTVLG----AFDPLDEIATVCEKYDLWMHVDACWGGSLIFS  142 (448)
Q Consensus        74 ~~-g-----~id~e~Le~~l~~~~~~~~~~~lVv~~~~-~t~tG----~~~~l~~I~~ia~~~g~~l~VD~A~~~~~~~~  142 (448)
                      .. .     .-|++++++.+.+.   +....+|++.-. ....|    ...++++|.++|++||+.+++|++|.+.-...
T Consensus       182 ~~~~~~~~~~~~~~~l~~~l~~~---~~~vaavivEPv~~g~gG~~~~~~~~l~~l~~lc~~~~~llI~DEv~tG~Gr~G  258 (427)
T TIGR00508       182 QNRFDEEWNEEAITPLAKLMELH---SDEIAAVILEPIVQGAGGMRFYHPTYLKRVQALCKQYDILLIADEIATGFGRTG  258 (427)
T ss_pred             CccccchhHHHHHHHHHHHHHhc---CCcEEEEEEechhcCcCCcccCCHHHHHHHHHHHHHcCCEEEEeccccCCCcCC
Confidence            11 0     11467777777542   224455666554 33333    34679999999999999999999984321111


Q ss_pred             cchhhhhcCCCCccEEEECCccccCCC-CceEEEEEecc
Q psy14299        143 EKYSFVLKGINRANSVSWNPHKMLGAP-LQCSILLIKEK  180 (448)
Q Consensus       143 ~~~~~~~~~~~~aD~~~~s~hK~l~~P-~g~G~l~vr~~  180 (448)
                      ..+.....++ ..|+++  ..|.+++- ..++.+..+++
T Consensus       259 ~~~~~~~~~v-~pDi~~--~gK~l~gG~~p~~a~~~~~~  294 (427)
T TIGR00508       259 KLFACEHAGV-VPDILC--VGKALTGGYMTLSATVTTDK  294 (427)
T ss_pred             ccchhhhcCC-CCCEEE--echhhhcCcccceEEEEcHH
Confidence            1111111233 368776  48887543 23555555443

All members of the seed alignment have been demonstrated experimentally to act as EC 2.6.1.62, an enzyme in the biotin biosynthetic pathway. Alternate names include 7,8-diaminopelargonic acid aminotransferase, DAPA aminotransferase, and adenosylmethionine-8-amino-7-oxononanoate aminotransferase. The gene symbol is bioA in E. coli and BIO3 in S. cerevisiae.

>PRK06173 adenosylmethionine--8-amino-7-oxononanoate transaminase; Provisional

Probab=99.21  E-value=8.9e-09  Score=106.57  Aligned_cols=165  Identities=14%  Similarity=0.092  Sum_probs=90.2

Q ss_pred             cEEEeCcHHHHHHHHHHHHHHhcCCcccccCCCCCCCeEEEecCCCchHHHHHHHHhC--------CC--CCcEEEEecC
Q psy14299          4 KPFLLPGGSISNMYSICLARYRLDPDTKRKGLSHLPPLCMFTSEDSHYSMLKAAHWLG--------IG--MDNVIRVKTN   73 (448)
Q Consensus         4 ~g~~t~ggT~an~~al~~a~~~~~~~~~~~G~~~~~~~~Vl~~~~~H~s~~~~~~~~g--------~~--~~~v~~v~~~   73 (448)
                      .++|+++||+||-.|+..+|....    +.|-+ ....+|......|-...-+....+        .+  ...+..+|.+
T Consensus       106 ~v~f~~sGseAve~AlklAr~~~~----~~g~~-~r~~ii~~~~~yHG~t~~a~s~~~~~~~~~~~~~~~~~~~~~~~~p  180 (429)
T PRK06173        106 KIFFADSGSVAVEVAMKMALQYQQ----AKGEV-QRTKFATIRSGYHGDTWHAMSVCDPVTGMHGLFNHSLPVQYFLPQP  180 (429)
T ss_pred             EEEEeCCchHHHHHHHHHHHHHHH----HhCCC-CCcEEEEECCCcCCcchhhhccCCCchhhhhcccccCCCCeEeCCC
Confidence            578999999999999999986421    11211 122344455556654322222211        00  0112333322


Q ss_pred             CCC------CcCHHHHHHHHHHhhhcCCCcEEEEEecc-CCccccccC----HHHHHHHHHHcCCEEEEecccccccccc
Q psy14299         74 ERG------QMICSFLEQTIQTSLAEKKIPLFVNATAG-TTVLGAFDP----LDEIATVCEKYDLWMHVDACWGGSLIFS  142 (448)
Q Consensus        74 ~~g------~id~e~Le~~l~~~~~~~~~~~lVv~~~~-~t~tG~~~~----l~~I~~ia~~~g~~l~VD~A~~~~~~~~  142 (448)
                      ...      .-+++.|++.++.   .+.++.+|++.-. ....|.+.|    +++|.++|++||+++++|.+|.+ .-..
T Consensus       181 ~~~~~~~~~~~~l~~l~~~i~~---~~~~iAAvi~EPi~qg~gG~~~~~~~yl~~l~~lc~~~g~llI~DEv~tG-~Grt  256 (429)
T PRK06173        181 SIKFGEEWNDEAIEPLQDLLEQ---KGDEIAALILEPVVQGAGGMYFYSPTYLVKARELCDQYGVLLIFDEIATG-FGRT  256 (429)
T ss_pred             CcccchhHHHHHHHHHHHHHHh---CCCcEEEEEEcchhhccCCcccCCHHHHHHHHHHHHHcCCeEEecchhcC-CCcC
Confidence            110      1145667777753   2234555666543 454565533    89999999999999999999854 2211


Q ss_pred             cc-hhhhhcCCCCccEEEECCccccCCC-CceEEEEEecc
Q psy14299        143 EK-YSFVLKGINRANSVSWNPHKMLGAP-LQCSILLIKEK  180 (448)
Q Consensus       143 ~~-~~~~~~~~~~aD~~~~s~hK~l~~P-~g~G~l~vr~~  180 (448)
                      .. +.....++ ..|+++  ..|.+++- ..++.++.+++
T Consensus       257 G~~~a~~~~gv-~PDiv~--~gK~l~gG~~p~~a~~~~~~  293 (429)
T PRK06173        257 GKLFALEHAGV-VPDIMC--IGKALTGGYLTLSATITTEA  293 (429)
T ss_pred             CcchHHHhcCC-CCCEEE--eehhhhCCccccceEEecHH
Confidence            11 11111233 368777  58887543 24566666553

>PRK07495 4-aminobutyrate aminotransferase; Provisional

Probab=99.20  E-value=5.3e-08  Score=100.74  Aligned_cols=162  Identities=12%  Similarity=0.131  Sum_probs=93.0

Q ss_pred             cEEEeCcHHHHHHHHHHHHHHhcCCcccccCCCCCCCeEEEecCCCchHHHHHHHHhCC--------C--CCcEEEEecC
Q psy14299          4 KPFLLPGGSISNMYSICLARYRLDPDTKRKGLSHLPPLCMFTSEDSHYSMLKAAHWLGI--------G--MDNVIRVKTN   73 (448)
Q Consensus         4 ~g~~t~ggT~an~~al~~a~~~~~~~~~~~G~~~~~~~~Vl~~~~~H~s~~~~~~~~g~--------~--~~~v~~v~~~   73 (448)
                      .++|+++||+||-.|+..||..-       |    ...+|-.....|-...-+..+.+.        +  ...+..+|.+
T Consensus       103 ~v~f~~SGseA~e~AlklAr~~t-------g----r~~ii~~~~~yHG~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  171 (425)
T PRK07495        103 KTIFVTTGAEAVENAVKIARAAT-------G----RSAVIAFGGGFHGRTFMGMSLTGKVVPYKVGFGAMMPDVYHVPFP  171 (425)
T ss_pred             EEEECCchHHHHHHHHHHHHHhh-------C----CCeEEEECCCcCCccHHHhhhcCCCcccccCCCCCCCCeEEecCC
Confidence            57999999999999999998751       1    223444555566554333332221        0  1134455543


Q ss_pred             CCC-CcC----HHHHHHHHHHhhhcCCCcEEEEEeccCCccccccC----HHHHHHHHHHcCCEEEEecccccccccccc
Q psy14299         74 ERG-QMI----CSFLEQTIQTSLAEKKIPLFVNATAGTTVLGAFDP----LDEIATVCEKYDLWMHVDACWGGSLIFSEK  144 (448)
Q Consensus        74 ~~g-~id----~e~Le~~l~~~~~~~~~~~lVv~~~~~t~tG~~~~----l~~I~~ia~~~g~~l~VD~A~~~~~~~~~~  144 (448)
                      .+. .++    .+++++.++.. ..+.++.+|++.-.....|.+.+    +++|.++|++||+++++|+++.+.-.....
T Consensus       172 ~~~~g~~~~~~~~~l~~~~~~~-~~~~~iaavi~EPv~g~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~tG~gr~G~~  250 (425)
T PRK07495        172 VELHGVSVEQSLAALDKLFKAD-VDPQRVAAIIIEPVQGEGGFYPAPAAFMKALRELCDQHGILLIADEVQTGFARTGKL  250 (425)
T ss_pred             cccccccHHHHHHHHHHHHHhc-cCCCceEEEEECCccCCCCCccCCHHHHHHHHHHHHHcCCEEEEechhhcCCcCCCc
Confidence            221 123    34446655421 01234667777666665675533    899999999999999999998743221111


Q ss_pred             hhhhhcCCCCccEEEECCccccCCCCceEEEEEecc
Q psy14299        145 YSFVLKGINRANSVSWNPHKMLGAPLQCSILLIKEK  180 (448)
Q Consensus       145 ~~~~~~~~~~aD~~~~s~hK~l~~P~g~G~l~vr~~  180 (448)
                      +.....++ ..|++++  .|.+++-..+|.+..+++
T Consensus       251 ~a~~~~gv-~pDi~tl--sK~l~~G~pigav~~~~~  283 (425)
T PRK07495        251 FAMEHHEV-AADLTTM--AKGLAGGFPLAAVTGRAE  283 (425)
T ss_pred             eeecccCC-CCCEEee--hhhhcCCccceEEEEcHH
Confidence            11111122 2566554  788775455777777553

>PRK09792 4-aminobutyrate transaminase; Provisional

Probab=99.17  E-value=3.8e-08  Score=101.77  Aligned_cols=162  Identities=15%  Similarity=0.112  Sum_probs=97.0

Q ss_pred             cEEEeCcHHHHHHHHHHHHHHhcCCcccccCCCCCCCeEEEecCCCchHHHHHHHHhCC--------C--CCcEEEEecC
Q psy14299          4 KPFLLPGGSISNMYSICLARYRLDPDTKRKGLSHLPPLCMFTSEDSHYSMLKAAHWLGI--------G--MDNVIRVKTN   73 (448)
Q Consensus         4 ~g~~t~ggT~an~~al~~a~~~~~~~~~~~G~~~~~~~~Vl~~~~~H~s~~~~~~~~g~--------~--~~~v~~v~~~   73 (448)
                      ..+|+++||+||-.|+..||..-       |    ...+|......|-...-+....+.        +  ...+..+|.+
T Consensus       103 ~~~f~~sGseA~e~AlklAr~~t-------g----r~~ii~~~~~yHG~t~~~~s~~~~~~~~~~~~~~~~~~~~~v~~p  171 (421)
T PRK09792        103 KTAFFTTGAEAVENAVKIARAHT-------G----RPGVIAFSGGFHGRTYMTMALTGKVAPYKIGFGPFPGSVYHVPYP  171 (421)
T ss_pred             eEEEeCChHHHHHHHHHHHHHhc-------C----CCeEEEECCCcCCccHHHHhhcCCCcccccCCCCCCCCcEEcCCC
Confidence            57899999999999999998641       1    223444555566554433333221        0  0123444443


Q ss_pred             CCC-Cc----CHHHHHHHHHHhhhcCCCcEEEEEeccCCcccccc-C---HHHHHHHHHHcCCEEEEecccccccccccc
Q psy14299         74 ERG-QM----ICSFLEQTIQTSLAEKKIPLFVNATAGTTVLGAFD-P---LDEIATVCEKYDLWMHVDACWGGSLIFSEK  144 (448)
Q Consensus        74 ~~g-~i----d~e~Le~~l~~~~~~~~~~~lVv~~~~~t~tG~~~-~---l~~I~~ia~~~g~~l~VD~A~~~~~~~~~~  144 (448)
                      .+. .+    +.+.+++.+++.. .+.++.+|++.-..+++|... |   +++|.++|++||+++++|+.+.+.......
T Consensus       172 ~~~~~~~~~~~~~~l~~~~~~~~-~~~~iaavi~EPvq~~~G~~~~~~~~l~~l~~lc~~~g~llI~DEv~tg~gr~G~~  250 (421)
T PRK09792        172 SDLHGISTQDSLDAIERLFKSDI-EAKQVAAIIFEPVQGEGGFNVAPKELVAAIRRLCDEHGIVMIADEVQSGFARTGKL  250 (421)
T ss_pred             cccccccHHHHHHHHHHHHHhcc-CCCceEEEEEccccCCCCCccCCHHHHHHHHHHHHHcCCEEEEeccccCCCCCCch
Confidence            221 12    3467777775310 123567888887777788654 5   999999999999999999987764222111


Q ss_pred             hhhhhcCCCCccEEEECCccccCCCCceEEEEEecc
Q psy14299        145 YSFVLKGINRANSVSWNPHKMLGAPLQCSILLIKEK  180 (448)
Q Consensus       145 ~~~~~~~~~~aD~~~~s~hK~l~~P~g~G~l~vr~~  180 (448)
                      +.....++ ..|.+  +..|.+++-..+|.++.+++
T Consensus       251 ~a~~~~~~-~pDi~--t~gK~l~~G~pigav~~~~~  283 (421)
T PRK09792        251 FAMDHYAD-KPDLM--TMAKSLAGGMPLSGVVGNAN  283 (421)
T ss_pred             hHHHhcCC-CCcEE--EeehhhcCCCceEEEEEcHH
Confidence            11111122 35754  45898875566788776543

>PRK07480 putative aminotransferase; Validated

Probab=99.16  E-value=6.8e-08  Score=100.81  Aligned_cols=167  Identities=18%  Similarity=0.167  Sum_probs=91.9

Q ss_pred             cEEEeCcHHHHHHHHHHHHHHhcCCcccccCCCCCCCeEEEecCCCchHHHHHHHHhCCC---------CCcEEEEecCC
Q psy14299          4 KPFLLPGGSISNMYSICLARYRLDPDTKRKGLSHLPPLCMFTSEDSHYSMLKAAHWLGIG---------MDNVIRVKTNE   74 (448)
Q Consensus         4 ~g~~t~ggT~an~~al~~a~~~~~~~~~~~G~~~~~~~~Vl~~~~~H~s~~~~~~~~g~~---------~~~v~~v~~~~   74 (448)
                      .++|+++||+|+-.|+..+|....    ..|.+ ....+|-.....|-...-+....|..         ...+..++.+.
T Consensus       113 ~v~f~~SGseA~e~AlklAr~~~~----~~g~~-~r~~ii~~~~~yHG~tl~a~s~~g~~~~~~~~~~~~~~~~~~~~p~  187 (456)
T PRK07480        113 HVFFTNSGSEANDTVLRMVRHYWA----LKGKP-QKKVIISRKNGYHGSTVAGASLGGMKYMHEQGDLPIPGIVHIDQPY  187 (456)
T ss_pred             EEEEeCCcHHHHHHHHHHHHHHHH----hcCCC-CCcEEEEECCCcCCcchhhhhccCChhhhcccCCCCCCCeecCCCc
Confidence            578999999999999999987421    11211 11223444445565443333332211         11122233211


Q ss_pred             CC----CcC--------HHHHHHHHHHhhhcCCCcEEEEEeccCCccccccC----HHHHHHHHHHcCCEEEEecccccc
Q psy14299         75 RG----QMI--------CSFLEQTIQTSLAEKKIPLFVNATAGTTVLGAFDP----LDEIATVCEKYDLWMHVDACWGGS  138 (448)
Q Consensus        75 ~g----~id--------~e~Le~~l~~~~~~~~~~~lVv~~~~~t~tG~~~~----l~~I~~ia~~~g~~l~VD~A~~~~  138 (448)
                      ..    ..+        ++.+++.+.+  ..+.++.+|++.-.....|.+.|    +++|.++|++||+.+++|+.+.+.
T Consensus       188 ~~~~~~~~~~~~~~~~~~~~l~~~~~~--~~~~~vAAvi~EPiqg~gG~~~~~~~yl~~lr~lc~~~g~llI~DEV~tGf  265 (456)
T PRK07480        188 WFGEGGDMTPEEFGLAAARQLEAKILE--LGADNVAAFIGEPIQGAGGVIIPPATYWPEIQRICRKYDILLVADEVICGF  265 (456)
T ss_pred             ccccccCCChHHHHHHHHHHHHHHHHh--cCCCcEEEEEEccccCCCCCccCCHHHHHHHHHHHHHcCCEEEEechhhCC
Confidence            10    011        2555554432  11234566777666666677766    999999999999999999988543


Q ss_pred             cccccchhhhhcCCCCccEEEECCccccCCCC-ceEEEEEecc
Q psy14299        139 LIFSEKYSFVLKGINRANSVSWNPHKMLGAPL-QCSILLIKEK  180 (448)
Q Consensus       139 ~~~~~~~~~~~~~~~~aD~~~~s~hK~l~~P~-g~G~l~vr~~  180 (448)
                      --....+.....++ ..|++++  .|.+++-+ .+|.++.+++
T Consensus       266 GRtG~~~a~~~~gv-~PDiv~~--gK~l~gG~~Pi~av~~~~~  305 (456)
T PRK07480        266 GRTGEWFGSQHFGI-KPDLMTI--AKGLTSGYIPMGAVGVGDR  305 (456)
T ss_pred             CcCcchhhhhhcCC-CCCeeee--ehhhccCCccceEEEEcHH
Confidence            11111111111233 3687765  78776532 3677777654

>PRK06938 diaminobutyrate--2-oxoglutarate aminotransferase; Provisional

Probab=99.16  E-value=2.3e-08  Score=104.44  Aligned_cols=162  Identities=17%  Similarity=0.147  Sum_probs=95.2

Q ss_pred             EEEe-CcHHHHHHHHHHHHHHhcCCcccccCCCCCCCeEEEecCCCchHHHHHHHHhCC-------C--CCcEEEEecCC
Q psy14299          5 PFLL-PGGSISNMYSICLARYRLDPDTKRKGLSHLPPLCMFTSEDSHYSMLKAAHWLGI-------G--MDNVIRVKTNE   74 (448)
Q Consensus         5 g~~t-~ggT~an~~al~~a~~~~~~~~~~~G~~~~~~~~Vl~~~~~H~s~~~~~~~~g~-------~--~~~v~~v~~~~   74 (448)
                      .+|+ ++||+|+-.|+..||..-       |    ...+|......|-...-+..+.+.       +  ...+..+|.+.
T Consensus       129 v~f~~~SGSEAve~AlklAr~~t-------g----r~~ii~~~~~yHG~t~~als~t~~~~~~~~~~~~~~~~~~~~~p~  197 (464)
T PRK06938        129 IQFCGPTGTDAVEAALKLVKTAT-------G----RSTVLSFQGGYHGMSQGALSLMGNLGPKKPLGALLPGVQFLPYPY  197 (464)
T ss_pred             EEEeCCCcHHHHHHHHHHHHHhh-------C----CCeEEEECCccCCccHHHHhhcCCccccccCCCCCCCcEEeCCCc
Confidence            4565 799999999999998751       1    233455555566554444443321       0  01244555432


Q ss_pred             CCC------------cCHHHHHHHHHHhhhcCCCcEEEEEeccCCccccccC----HHHHHHHHHHcCCEEEEecccccc
Q psy14299         75 RGQ------------MICSFLEQTIQTSLAEKKIPLFVNATAGTTVLGAFDP----LDEIATVCEKYDLWMHVDACWGGS  138 (448)
Q Consensus        75 ~g~------------id~e~Le~~l~~~~~~~~~~~lVv~~~~~t~tG~~~~----l~~I~~ia~~~g~~l~VD~A~~~~  138 (448)
                      +.+            .+.+.+++.+++.......+.+|++.-.-...|.+.|    ++++.++|++||+++++|+.+.+.
T Consensus       198 ~~~~~~~~~~~~~~~~~~~~l~~~i~~~~~~~~~iAAvI~EPiqg~gG~~~p~~~yl~~lr~lc~~~giLlI~DEV~tGf  277 (464)
T PRK06938        198 DYRCPFGLGGEAGVRANLHYLENLLDDPESGVVLPAAVILEVVQGEGGVIPAPIEWLRGLRRITEEAGIPLIVDEIQSGF  277 (464)
T ss_pred             cccccccCchhhHHHHHHHHHHHHHHhhccCCCceEEEEEccccCCCCCcCCCHHHHHHHHHHHHHcCCEEEEeccccCC
Confidence            211            1356778877542111124556666655555566544    899999999999999999987653


Q ss_pred             cccccchhhhhcCCCCccEEEECCccccCCCCceEEEEEecc
Q psy14299        139 LIFSEKYSFVLKGINRANSVSWNPHKMLGAPLQCSILLIKEK  180 (448)
Q Consensus       139 ~~~~~~~~~~~~~~~~aD~~~~s~hK~l~~P~g~G~l~vr~~  180 (448)
                      --...-+.....++ ..|++++  -|.+++-..+|.++.+++
T Consensus       278 GRtG~~~a~e~~gv-~PDiv~~--gKglggG~PlsAv~~~~~  316 (464)
T PRK06938        278 GRTGKMFAFEHAGI-IPDVVVL--SKAIGGSLPLAVVVYREW  316 (464)
T ss_pred             CcCcHHHHHHhcCC-CCCEEEe--eccccCCCceEEEeehhH
Confidence            21111111111233 3688887  687766566888877654

>PRK07036 hypothetical protein; Provisional

Probab=99.15  E-value=4.5e-08  Score=102.39  Aligned_cols=167  Identities=18%  Similarity=0.213  Sum_probs=93.9

Q ss_pred             cEEEeCcHHHHHHHHHHHHHHhcCCcccccCCCCCCCeEEEecCCCchHHHHHHHHhCCCC---------CcEEEEecCC
Q psy14299          4 KPFLLPGGSISNMYSICLARYRLDPDTKRKGLSHLPPLCMFTSEDSHYSMLKAAHWLGIGM---------DNVIRVKTNE   74 (448)
Q Consensus         4 ~g~~t~ggT~an~~al~~a~~~~~~~~~~~G~~~~~~~~Vl~~~~~H~s~~~~~~~~g~~~---------~~v~~v~~~~   74 (448)
                      .++|+++||+||-.|+..||....    ..|-+ ....+|......|-...-+....+...         ..+..+|.+.
T Consensus       114 ~v~f~~sGseAve~AlklAr~~~~----~~g~t-~r~~Ii~~~~~YHG~t~~a~s~~~~~~~~~~~~~~~~~~~~~~~p~  188 (466)
T PRK07036        114 HVFLTTGGSTAVDSALRFVHYYFN----VRGRP-AKKHIITRGDAYHGSTYLTASLTGKAADRTEFDYASDLVHHLSSPN  188 (466)
T ss_pred             EEEEeCCchHHHHHHHHHHHHHHH----hcCCC-CccEEEEEcCccCCccHhhhcccCCCcccccccCCCCCcEEecCCc
Confidence            479999999999999999986421    11211 122344445555654433333322110         1133333321


Q ss_pred             C----CCcC--------HHHHHHHHHHhhhcCCCcEEEEEeccCCccccccC----HHHHHHHHHHcCCEEEEecccccc
Q psy14299         75 R----GQMI--------CSFLEQTIQTSLAEKKIPLFVNATAGTTVLGAFDP----LDEIATVCEKYDLWMHVDACWGGS  138 (448)
Q Consensus        75 ~----g~id--------~e~Le~~l~~~~~~~~~~~lVv~~~~~t~tG~~~~----l~~I~~ia~~~g~~l~VD~A~~~~  138 (448)
                      .    ..++        .+.+++.+..  ..+..+.+|++.-.....|.+.|    +++|.++|++||+++++|+.+.+.
T Consensus       189 ~~~~~~~~~~~~~~~~~~~~~~~~i~~--~~~~~iAavi~EPv~g~gG~~~p~~~yl~~lr~lc~~~g~llI~DEV~tGf  266 (466)
T PRK07036        189 PYRRPAGMSEAAFCDFLVDEFEDKILS--LGADNIAAFIAEPILGSGGVIVPPPGYHARMREICRRYDILYISDEVVTGF  266 (466)
T ss_pred             ccccccCCChHHHHHHHHHHHHHHHHH--cCCCceEEEEEeCCcCCCCCccCCHHHHHHHHHHHHHcCCEEEEeechhCC
Confidence            1    1111        2344454532  12235667777777776788777    999999999999999999987543


Q ss_pred             cccccchhhh-hcCCCCccEEEECCccccCCCC-ceEEEEEecc
Q psy14299        139 LIFSEKYSFV-LKGINRANSVSWNPHKMLGAPL-QCSILLIKEK  180 (448)
Q Consensus       139 ~~~~~~~~~~-~~~~~~aD~~~~s~hK~l~~P~-g~G~l~vr~~  180 (448)
                      --....+... ..++ ..|++++  .|.+++-+ .+|.+..+++
T Consensus       267 GRtG~~~~~~~~~gv-~PDivt~--gK~l~gG~~Pi~av~~~~~  307 (466)
T PRK07036        267 GRLGHFFASEAVFGI-QPDIITF--AKGLTSGYQPLGAVIISER  307 (466)
T ss_pred             CcCchhhhhhhhcCC-CCCEEEE--ccccccCccccEEEEEcHH
Confidence            1111111110 1233 3688776  78776532 4777777654

>TIGR03251 LAT_fam L-lysine 6-transaminase

Probab=99.15  E-value=2.3e-08  Score=103.64  Aligned_cols=157  Identities=11%  Similarity=0.112  Sum_probs=84.9

Q ss_pred             cEEEeCcHHHHHHHHHHHHHHhcCCcccccCCCC-CCCeEEEecCCCchHHHHHHHHhCCCCCc--EE------EEecC-
Q psy14299          4 KPFLLPGGSISNMYSICLARYRLDPDTKRKGLSH-LPPLCMFTSEDSHYSMLKAAHWLGIGMDN--VI------RVKTN-   73 (448)
Q Consensus         4 ~g~~t~ggT~an~~al~~a~~~~~~~~~~~G~~~-~~~~~Vl~~~~~H~s~~~~~~~~g~~~~~--v~------~v~~~-   73 (448)
                      .++|+++||+||-.|+..||....+..+..|-+. ....+|-.....|-...-+....|.....  ..      .++.. 
T Consensus       105 ~v~f~~sGsEAve~AlklAr~~t~~~~~~~g~~~~~~~~ii~~~~~yHG~t~~als~~~~~~~~~~~~~~~~~~~~~~p~  184 (431)
T TIGR03251       105 HLFFIEGGALAVENALKTAFDWKSRHNQARGIPAALGTQVLHLRQAFHGRSGYTLSLTNTDPRKTARFPKFDWPRIDNPK  184 (431)
T ss_pred             EEEEeCCcHHHHHHHHHHHHHHhhcchhhcCCCCCCCceEEEECCccCCcchhhhhccCCccccccCCCCCCCccCCCCc
Confidence            4689999999999999999865211001112110 01234555555665554444443321000  00      01110 


Q ss_pred             ------CCC-C-------cCHHHHHHHHHHhhhcCCCcEEEEEeccCCccccc----cCHHHHHHHHHHcCCEEEEeccc
Q psy14299         74 ------ERG-Q-------MICSFLEQTIQTSLAEKKIPLFVNATAGTTVLGAF----DPLDEIATVCEKYDLWMHVDACW  135 (448)
Q Consensus        74 ------~~g-~-------id~e~Le~~l~~~~~~~~~~~lVv~~~~~t~tG~~----~~l~~I~~ia~~~g~~l~VD~A~  135 (448)
                            ... .       -+++++++.+..   .+..+.+|++.-.....|.+    ..+++|.++|++||+.+++|+.+
T Consensus       185 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~---~~~~iAavivEPv~g~~G~~~~~~~~l~~l~~lc~~~g~llI~DEV~  261 (431)
T TIGR03251       185 LTFPLDAPNLDQVIALEEEALRQARAAFAE---RPHDIACFIAEPIQGEGGDNHFRPEFLRAMRALCDEHDALLIFDEVQ  261 (431)
T ss_pred             ccCCccccccchhhHHHHHHHHHHHHHHHh---CCCcEEEEEEeccccCCCCcCCCHHHHHHHHHHHHHcCCEEEEecch
Confidence                  000 0       123344455542   23457778887777767765    35999999999999999999998


Q ss_pred             ccccccccchhhhhcCCCCccEEEECCcccc
Q psy14299        136 GGSLIFSEKYSFVLKGINRANSVSWNPHKML  166 (448)
Q Consensus       136 ~~~~~~~~~~~~~~~~~~~aD~~~~s~hK~l  166 (448)
                      .+.-.....+.....++ ..|++++  .|.+
T Consensus       262 tG~GrtG~~~a~~~~gv-~PDi~~~--gK~~  289 (431)
T TIGR03251       262 TGVGLTGTAWAYQQLGV-QPDIVAF--GKKT  289 (431)
T ss_pred             hccCccchHHHHHhcCC-CCCEEEe--cccC
Confidence            74322111111111233 3788876  4544

Characterized members of this protein family are L-lysine 6-transaminase, also called lysine epsilon-aminotransferase (LAT). The immediate product of the reaction of this enzyme on lysine, 2-aminoadipate 6-semialdehyde, becomes 1-piperideine 6-carboxylate, or P6C. This product may be converted subsequently to pipecolate or alpha-aminoadipate, lysine catabolites that may be precursors of certain seconary metabolites.

>KOG1358|consensus

Probab=99.14  E-value=8.4e-09  Score=101.03  Aligned_cols=274  Identities=15%  Similarity=0.138  Sum_probs=176.4

Q ss_pred             CCeEEEecCCCchHHHHHHHHhCCCCCcEEEEecCCCCCcCHHHHHHHHHHhh----hcCCC---cEEEEEeccCCcccc
Q psy14299         39 PPLCMFTSEDSHYSMLKAAHWLGIGMDNVIRVKTNERGQMICSFLEQTIQTSL----AEKKI---PLFVNATAGTTVLGA  111 (448)
Q Consensus        39 ~~~~Vl~~~~~H~s~~~~~~~~g~~~~~v~~v~~~~~g~id~e~Le~~l~~~~----~~~~~---~~lVv~~~~~t~tG~  111 (448)
                      .+++|++++..+..+.++.++..-   .+....++     |+++|++.+.+..    +..++   .+.+++....-++|.
T Consensus       177 rGDIi~~de~~nfaIq~GlqlSRS---~i~~Fkhn-----dm~~lerll~E~~~~~~K~~k~~~~Rrfiv~EGl~~N~g~  248 (467)
T KOG1358|consen  177 RGDIIFVDEAVNFAIQKGLQLSRS---TISYFKHN-----DMEDLERLLPEQEDEDQKNPKKALTRRFIVVEGLYANTGD  248 (467)
T ss_pred             cCcEEEEehhhhHHHHHHHhhhhh---eeEEecCC-----CHHHHHHhccCcchhhhhccccccceEEEEEEeeccCCCc
Confidence            467899999999999999887665   67788877     8999988875321    11221   457888888999999


Q ss_pred             ccCHHHHHHHHHHcCCEEEEecccccccccc------cchhhhhcCCCCccEEEECCccccCCCCceEEEEEeccchhhh
Q psy14299        112 FDPLDEIATVCEKYDLWMHVDACWGGSLIFS------EKYSFVLKGINRANSVSWNPHKMLGAPLQCSILLIKEKGLLHQ  185 (448)
Q Consensus       112 ~~~l~~I~~ia~~~g~~l~VD~A~~~~~~~~------~~~~~~~~~~~~aD~~~~s~hK~l~~P~g~G~l~vr~~~~~~~  185 (448)
                      +-|+.+|.++..+|...+++|..++.|.+--      .+..   -.+..+|.++.+.--.+.   +.|.+.+.+.-+...
T Consensus       249 i~pl~~iv~lk~Kyk~RvildEs~SfG~lg~~GrGvteH~~---v~~~~iDiv~~sm~~ala---s~GgFc~G~~~i~~h  322 (467)
T KOG1358|consen  249 ICPLPEIVKLKNKYKFRVILDESLSFGVLGKTGRGVTEHFG---VPITDIDIVTASMETALA---SGGGFCAGKSFIADH  322 (467)
T ss_pred             ccccHHHHHHHhhheEEEEEecccccccccccCccccccCC---CCccceeeeeeccccccc---ccCceeecceeeEee
Confidence            9999999999999999999999988876622      1111   123458999988876554   345555554333333


Q ss_pred             hccCCcccccccCcccccccCCCCCcccCCCCchhHHHHHHHHHhChHHHHHHHHHhhhhccCCCccchhhhhhhhhhhh
Q psy14299        186 ANATAATYLFQQDKFYDVSFDTGDKSVQCGRKVDAFKLWLMWKARGNLGFRHFVDNAVDCSRGSMTFSTLLCFDLQGLLH  265 (448)
Q Consensus       186 ~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~g~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~  265 (448)
                      ..-.+.+|.++.+.+                   +.     +...+...+.. +++                        
T Consensus       323 QrLSg~~Y~fSAslP-------------------p~-----la~aa~~ai~i-~~~------------------------  353 (467)
T KOG1358|consen  323 QRLSGSGYCFSASLP-------------------PY-----LAGAAIKAILI-EEW------------------------  353 (467)
T ss_pred             eeccccceeeeccCc-------------------hh-----hhhhHHHHHHH-Hhh------------------------
Confidence            223455676654421                   00     00011111100 000                        


Q ss_pred             hhhhhhhhhhhccccccccccCCCCCccccccchhhHHHHHHHHHhcCccHHHHHHHHHHHHHHHHHHhhcCCCeEEecc
Q psy14299        266 QANATAATYLFQQDKFYDVSFDTGDKSVQCGRKVDAFKLWLMWKARGNLGFRHFVDNAVDCSRYFLSQISQRPGFRLVIP  345 (448)
Q Consensus       266 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~~l~~~~~~~L~~~pg~~l~~~  345 (448)
                                                                        -..+.+........+.+.|+...++++. +
T Consensus       354 --------------------------------------------------~p~~~~~L~~k~~~~H~~l~~~s~~~v~-~  382 (467)
T KOG1358|consen  354 --------------------------------------------------NPEIVQPLRAKVAKFHAALSSNSGFIVS-G  382 (467)
T ss_pred             --------------------------------------------------CcchhhhhhccccccchhhhcCCceEEe-c
Confidence                                                              0112233444456677888888889988 7


Q ss_pred             CCceeeEEEEeeccCCCccccchhhhhhhhhhhHHHHHHHHhCCcEEEEeeecCC--c-ccccEEEEEecCCCCCCHHHH
Q psy14299        346 EFQCTNICFWFIPVSLRDKVEDETWWSTLSKVAPRIKEKLVLGGTLMIGYQPLQH--R-NLHNFFRLVTTCHPASSRQDM  422 (448)
Q Consensus       346 ~~~~~~v~f~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~L~~~g~~~~~~~~~~g--~-~~~~~lRis~~~~~~~t~edi  422 (448)
                      .+.++++-+.+.++...     .   +.-.++..++.++.+.++..+..-....+  + ..+..+|+++  +...++||+
T Consensus       383 ~~~SPi~hl~l~~~~~s-----~---e~e~~lL~eivd~~i~~~~ll~~a~~~~~~e~~~~~pSiri~~--~a~~seeel  452 (467)
T KOG1358|consen  383 SPESPIIHLQLERSYGS-----R---EKEEKLLEEIVDKCIAEGVLLTRAKYLEKLERCPIPPSIRICV--SAGMSEEEL  452 (467)
T ss_pred             CcCCceeeeeecccccc-----h---HHHHHHHHHHHHHHHhhcceehhhhhhhhcccCCCCCcEEEEE--eCCCCHHHH
Confidence            88888888877643221     0   11123445777877777755443322211  1 1235799999  789999999


Q ss_pred             HHHHHHHHHHHHHh
Q psy14299        423 DYAIDQIELRGAEV  436 (448)
Q Consensus       423 d~l~~al~~~~~~~  436 (448)
                      +++.+.|++.+..+
T Consensus       453 ~ra~~~ik~~~~~~  466 (467)
T KOG1358|consen  453 ERAAELIKEVASAV  466 (467)
T ss_pred             HHHHHHHHHHHHhh
Confidence            99999999987653

>PRK06917 hypothetical protein; Provisional

Probab=99.14  E-value=2.1e-07  Score=96.94  Aligned_cols=167  Identities=16%  Similarity=0.163  Sum_probs=89.9

Q ss_pred             cEEEeCcHHHHHHHHHHHHHHhcCCcccccCCCCCCCeEEEecCCCchHHHHHHHHhCCCC---------CcEEEEecCC
Q psy14299          4 KPFLLPGGSISNMYSICLARYRLDPDTKRKGLSHLPPLCMFTSEDSHYSMLKAAHWLGIGM---------DNVIRVKTNE   74 (448)
Q Consensus         4 ~g~~t~ggT~an~~al~~a~~~~~~~~~~~G~~~~~~~~Vl~~~~~H~s~~~~~~~~g~~~---------~~v~~v~~~~   74 (448)
                      .++|+++||+|+-.|+..||....    ++|.+ ....++-.....|-...-+....+...         ..+..+|.+.
T Consensus        93 ~v~f~~sGsEAve~AlklAr~~~~----~rg~t-~r~~ii~~~~~yHG~t~~als~~~~~~~~~~~~~~~~~~~~~~~p~  167 (447)
T PRK06917         93 WSFFVNSGSEANETAMKIAIQHFQ----ERGIQ-GKHKILSRWMSYHGITMGALSMSGHPLRRQRFVSLLEDYPTISAPY  167 (447)
T ss_pred             EEEEeCChHHHHHHHHHHHHHHHH----hcCCC-CCCEEEEECCCcCCccHHHHHhcCCccccccCCCCCCCCeEeCCCc
Confidence            478999999999999999987521    11222 122334444455654444434333210         0122222211


Q ss_pred             CCC------------cCHHHHHHHHHHhhhcCCCcEEEEEeccCCcc-ccccC----HHHHHHHHHHcCCEEEEeccccc
Q psy14299         75 RGQ------------MICSFLEQTIQTSLAEKKIPLFVNATAGTTVL-GAFDP----LDEIATVCEKYDLWMHVDACWGG  137 (448)
Q Consensus        75 ~g~------------id~e~Le~~l~~~~~~~~~~~lVv~~~~~t~t-G~~~~----l~~I~~ia~~~g~~l~VD~A~~~  137 (448)
                      ..+            -+.+.+++.+++.  .+..+.+|++.-..... |.+.|    +++|.++|++||+++++|+.+.+
T Consensus       168 ~~~~~~~~~~~~~~~~~~~~le~~i~~~--~~~~iAAvi~EPi~g~~gG~~~p~~~fl~~lr~lc~~~g~llI~DEv~tG  245 (447)
T PRK06917        168 CYRCPVQKVYPTCQLACATELETAIERI--GAEHIAAFIAEPIIGAAGAAVVPPKGYYKVIKEICDHYDILFIADEVMTG  245 (447)
T ss_pred             ccccccCCChHHHHHHHHHHHHHHHHhc--CCCceEEEEEeccccCcCceecCCHHHHHHHHHHHHHcCCEEEEechhhC
Confidence            111            0235666666531  11235556665444323 44433    89999999999999999998774


Q ss_pred             ccccccchhhhhcCCCCccEEEECCccccCCCC-ceEEEEEecc
Q psy14299        138 SLIFSEKYSFVLKGINRANSVSWNPHKMLGAPL-QCSILLIKEK  180 (448)
Q Consensus       138 ~~~~~~~~~~~~~~~~~aD~~~~s~hK~l~~P~-g~G~l~vr~~  180 (448)
                      .--....+.....++ ..|.+++  .|.+++-+ ..|.+..+++
T Consensus       246 fGRtG~~~a~~~~gv-~PDi~~~--gK~l~~G~~Pi~a~~~~~~  286 (447)
T PRK06917        246 LGRTGAMFAMEHWGV-EPDIMTL--GKGLGAGYTPIAATVVSDR  286 (447)
T ss_pred             cCcccchhhHHhcCC-CCCEEEe--eehhccCCcceEEEEEcHH
Confidence            211111111111233 3688765  78877533 4677777653

>PRK06082 4-aminobutyrate aminotransferase; Provisional

Probab=99.14  E-value=6.6e-08  Score=100.94  Aligned_cols=159  Identities=19%  Similarity=0.174  Sum_probs=94.0

Q ss_pred             cEEEeCcHHHHHHHHHHHHHHhcCCcccccCCCCCCCeEEEecCCCchHHHHHHHHhCCCC---------CcEEEEecCC
Q psy14299          4 KPFLLPGGSISNMYSICLARYRLDPDTKRKGLSHLPPLCMFTSEDSHYSMLKAAHWLGIGM---------DNVIRVKTNE   74 (448)
Q Consensus         4 ~g~~t~ggT~an~~al~~a~~~~~~~~~~~G~~~~~~~~Vl~~~~~H~s~~~~~~~~g~~~---------~~v~~v~~~~   74 (448)
                      .++|+++||+|+-.|+..+|...       |    ...+|......|-....+....+...         ..+..+|...
T Consensus       132 ~v~f~~sGseAve~AlklAr~~t-------g----r~~ii~~~~~yHG~t~~a~s~~~~~~~~~~~~~~~~~~~~~~~~~  200 (459)
T PRK06082        132 RVLFAPGGTSAIGMALKLARHIT-------G----NFKVVSLWDSFHGASLDAISVGGEACFRQGMGPLMAGVERIPPAV  200 (459)
T ss_pred             EEEECCCcHHHHHHHHHHHHHhc-------C----CCEEEEEeCCCcCccHHHHhhcCCcccccCCCCCCCCCEEeCCCc
Confidence            57899999999999999998751       1    23355556667776655555443210         0123333221


Q ss_pred             CCC-----c------CHHHHHHHHHHhhhcCCCcEEEEEeccCCccccccC---HHHHHHHHHHcCCEEEEecccccccc
Q psy14299         75 RGQ-----M------ICSFLEQTIQTSLAEKKIPLFVNATAGTTVLGAFDP---LDEIATVCEKYDLWMHVDACWGGSLI  140 (448)
Q Consensus        75 ~g~-----i------d~e~Le~~l~~~~~~~~~~~lVv~~~~~t~tG~~~~---l~~I~~ia~~~g~~l~VD~A~~~~~~  140 (448)
                      ..+     .      +++.+++.+++    ...+.+|++.-.....+.+.|   +++|.++|++||+++++|+++.+.-.
T Consensus       201 ~~~~~~~~~~~~~~~~~~~l~~~i~~----~~~vAavIvEPv~g~g~~~~~~~yl~~lr~lc~~~g~llI~DEV~tG~GR  276 (459)
T PRK06082        201 SYRGAFPDADGSDVHYADYLEYVIEK----EGGIGAFIAEAVRNTDVQVPSKAYWKRVREICDKHNVLLIIDEIPNGMGR  276 (459)
T ss_pred             ccccccCChhHHHHHHHHHHHHHHhc----CCCEEEEEECCccCCCCcCCCHHHHHHHHHHHHHcCCEEEEechhhCCCc
Confidence            111     1      13456666643    124556666555444333445   89999999999999999999875311


Q ss_pred             cccchhhhhcCCCCccEEEECCccccCCCC-ceEEEEEecc
Q psy14299        141 FSEKYSFVLKGINRANSVSWNPHKMLGAPL-QCSILLIKEK  180 (448)
Q Consensus       141 ~~~~~~~~~~~~~~aD~~~~s~hK~l~~P~-g~G~l~vr~~  180 (448)
                      ...-+.....++ ..|+++  ..|.+++-. ..|.+..+++
T Consensus       277 tG~~fa~e~~gv-~PDiv~--~gKgl~gG~~P~~av~~~~~  314 (459)
T PRK06082        277 TGEWFTHQAYGI-EPDILC--IGKGLGGGLVPIAAMITKDK  314 (459)
T ss_pred             cchhhHhHhhCC-CCCEEE--ecccccCCCCcceEEEEcHH
Confidence            111111111234 378887  589887642 4677777654

>PRK06148 hypothetical protein; Provisional

Probab=99.14  E-value=4.8e-08  Score=110.95  Aligned_cols=163  Identities=17%  Similarity=0.139  Sum_probs=95.4

Q ss_pred             cEEEeCcHHHHHHHHHHHHHHhcCCcccccCCCCCCCeEEEecCCCchHHHHHHHHhC--------CC-CCcEEEEecCC
Q psy14299          4 KPFLLPGGSISNMYSICLARYRLDPDTKRKGLSHLPPLCMFTSEDSHYSMLKAAHWLG--------IG-MDNVIRVKTNE   74 (448)
Q Consensus         4 ~g~~t~ggT~an~~al~~a~~~~~~~~~~~G~~~~~~~~Vl~~~~~H~s~~~~~~~~g--------~~-~~~v~~v~~~~   74 (448)
                      .++|+++|||||-.|+..||..-       |    ...+|......|-...-+....+        .+ ...+..++...
T Consensus       682 ~v~f~nSGsEA~e~AlklAr~~t-------G----r~~ii~~~~~YHG~t~~a~s~s~~~~~~~~~~~~~~~~~~~~~p~  750 (1013)
T PRK06148        682 VAFFVNSGSEANSLALRLARAHT-------G----QRDAIVLDHAYHGTTTELIDLSPYKFNRKGGKGRPDHVEVAEVPD  750 (1013)
T ss_pred             EEEEeCCcHHHHHHHHHHHHHhc-------C----CCeEEEEcCCccCCCcchhhcCchhhcccCCCCCCCCceEcCCCC
Confidence            36899999999999999999752       1    22344445555544332222211        00 11233333221


Q ss_pred             CC--Cc---C-------HHHHHHHHHHhhhcCCCcEEEEEeccCCccccccC----HHHHHHHHHHcCCEEEEecccccc
Q psy14299         75 RG--QM---I-------CSFLEQTIQTSLAEKKIPLFVNATAGTTVLGAFDP----LDEIATVCEKYDLWMHVDACWGGS  138 (448)
Q Consensus        75 ~g--~i---d-------~e~Le~~l~~~~~~~~~~~lVv~~~~~t~tG~~~~----l~~I~~ia~~~g~~l~VD~A~~~~  138 (448)
                      ..  ..   +       .+.+++.++.....+..+.+|++.-.....|.+.|    +++|.++|++||+.+++|+.+.+.
T Consensus       751 ~~~~~~~~~~~~~~~~~~~~l~~~i~~~~~~~~~iAAvI~EPv~g~gG~i~pp~~yl~~lr~lc~~~g~llI~DEVqtGf  830 (1013)
T PRK06148        751 SYRGPERWPDAEHGRRFAESVAEQIAAMAAKGRGPAFFIAESIPSVAGQIFLPEGYLREVYAMVRAAGGVCIADEVQVGF  830 (1013)
T ss_pred             ccccCCCCChhhhHHHHHHHHHHHHHhhhccCCceEEEEEcCCcCCCCCcCCCHHHHHHHHHHHHHhCCEEEEEecccCC
Confidence            11  11   1       24566666432222345667777766666677766    999999999999999999987543


Q ss_pred             ccccc-chhhhhcCCCCccEEEECCccccCCCCceEEEEEecc
Q psy14299        139 LIFSE-KYSFVLKGINRANSVSWNPHKMLGAPLQCSILLIKEK  180 (448)
Q Consensus       139 ~~~~~-~~~~~~~~~~~aD~~~~s~hK~l~~P~g~G~l~vr~~  180 (448)
                      --... -+.....++ ..|++++  -|.+++-..+|.+..+++
T Consensus       831 GRtG~~~~a~e~~gv-~PDivt~--gK~lggG~Plgav~~~~e  870 (1013)
T PRK06148        831 GRVGSHWWAFETQGV-VPDIVTM--GKPIGNGHPMGAVVTTRE  870 (1013)
T ss_pred             CCCCCcchhhhhcCC-Ccceeee--cccccCCcceEEEEEcHH
Confidence            11111 011111233 3688776  788876667888888654

>PRK06943 adenosylmethionine--8-amino-7-oxononanoate transaminase; Provisional

Probab=99.13  E-value=1.3e-07  Score=98.59  Aligned_cols=166  Identities=10%  Similarity=0.098  Sum_probs=93.8

Q ss_pred             cEEEeCcHHHHHHHHHHHHHHhcCCcccccCCCCCCCeEEEecCCCchHHHHHHHHhCCC---------CCcEEEEecCC
Q psy14299          4 KPFLLPGGSISNMYSICLARYRLDPDTKRKGLSHLPPLCMFTSEDSHYSMLKAAHWLGIG---------MDNVIRVKTNE   74 (448)
Q Consensus         4 ~g~~t~ggT~an~~al~~a~~~~~~~~~~~G~~~~~~~~Vl~~~~~H~s~~~~~~~~g~~---------~~~v~~v~~~~   74 (448)
                      .++|+++||+|+-.|+..|+....    .+|.+ ....+|......|-...-+....|..         ...+..+|.+.
T Consensus       116 ~v~f~~sGseAve~AlKlA~~~~~----~rg~~-~r~~Ii~~~~~yHG~t~gals~~~~~~~~~~~~~~~~~~~~~~~p~  190 (453)
T PRK06943        116 HAFFASDGASAVEIALKMSFHAWR----NRGRG-DKREFVCLANGYHGETIGALGVTDVALFKDAYDPLIRHAHVVASPD  190 (453)
T ss_pred             EEEEeCCCHHHHHHHHHHHHHHHH----HhCCC-CCCEEEEECCCcCCCcHHhhcccCChhhhcccccCCCCCEEECCCC
Confidence            579999999999999999976421    01211 12234555555665443333333210         00123343322


Q ss_pred             CCC------------cCHHHHHHHHHHhhhcCCCcEEEEEec-cCCccccccC----HHHHHHHHHHcCCEEEEeccccc
Q psy14299         75 RGQ------------MICSFLEQTIQTSLAEKKIPLFVNATA-GTTVLGAFDP----LDEIATVCEKYDLWMHVDACWGG  137 (448)
Q Consensus        75 ~g~------------id~e~Le~~l~~~~~~~~~~~lVv~~~-~~t~tG~~~~----l~~I~~ia~~~g~~l~VD~A~~~  137 (448)
                      ...            -+++++++.++.   .+..+.+|++.- .....|.+.|    +++|.++|++||+.+++|+.+.+
T Consensus       191 ~~~~~~~~~~~~~~~~~~~~l~~~l~~---~~~~iAAviiEPvvqg~gG~~~~~~~yl~~lr~lc~~~gillI~DEV~TG  267 (453)
T PRK06943        191 ARGARPGETAADVAARALADVRRLFAE---RAGKIAALIVEPLVQCAAGMAMHDPSYLRGLRALCDRYGVHLIADEIAVG  267 (453)
T ss_pred             ccccccCCCHHHHHHHHHHHHHHHHHh---CCCceEEEEEeccccccCCcccCCHHHHHHHHHHHHHcCCEEEeechhhC
Confidence            110            124667777753   123455566654 2455666543    89999999999999999998754


Q ss_pred             ccccccchhhhhcCCCCccEEEECCccccCCC-CceEEEEEecc
Q psy14299        138 SLIFSEKYSFVLKGINRANSVSWNPHKMLGAP-LQCSILLIKEK  180 (448)
Q Consensus       138 ~~~~~~~~~~~~~~~~~aD~~~~s~hK~l~~P-~g~G~l~vr~~  180 (448)
                      .-....-+.....++ ..|++++  -|.+++- ..+|.+..+++
T Consensus       268 ~GRtG~~fa~~~~gv-~PDivt~--gKgl~gG~~Pi~av~~~~e  308 (453)
T PRK06943        268 CGRTGTFFACEQAGV-WPDFLCL--SKGISGGYLPLSLVLSRDA  308 (453)
T ss_pred             CCCCcchhHHHhCCC-CCCeEee--ehhhccCcccceEEEEcHH
Confidence            311111111111234 3788887  7877654 25777777664

>KOG3846|consensus

Probab=99.13  E-value=3.3e-09  Score=100.80  Aligned_cols=294  Identities=12%  Similarity=0.140  Sum_probs=189.3

Q ss_pred             CCCchHHHHHHHHhCCCC-CcEEEEecCCC-CCcCHHHHHHHHHHhhhcCCCcEEEEEeccCCccccccCHHHHHHHHHH
Q psy14299         47 EDSHYSMLKAAHWLGIGM-DNVIRVKTNER-GQMICSFLEQTIQTSLAEKKIPLFVNATAGTTVLGAFDPLDEIATVCEK  124 (448)
Q Consensus        47 ~~~H~s~~~~~~~~g~~~-~~v~~v~~~~~-g~id~e~Le~~l~~~~~~~~~~~lVv~~~~~t~tG~~~~l~~I~~ia~~  124 (448)
                      +..||++..-|++.|+.. ..++.+++.++ ..+..+++...|++.   +....+|.++...+.||...|+.+|...-+.
T Consensus       166 PSDhYAiesQ~~lhG~~~e~sm~~iePREGEetlRteDILd~IEkn---gDeiA~v~fSGvqyYTGQ~Fdi~aIT~Agq~  242 (465)
T KOG3846|consen  166 PSDHYAIESQCKLHGISPENSMIQIEPREGEETLRTEDILDTIEKN---GDEIALVCFSGVQYYTGQYFDIGAITFAGQF  242 (465)
T ss_pred             CchHHHHHhhhhhcCCChHHheEEecccccccchhHHHHHHHHHhc---CCeEEEEEeecceeecccccchhhhhhcccC
Confidence            357999999999999854 34666665543 377889999998873   4456788899999999999999999977777


Q ss_pred             cCCEEEEecccccccccccchhhhhcCCCCccEEEECCccccC-CCCceEEEEEeccchhhhhccCCcccccccCccccc
Q psy14299        125 YDLWMHVDACWGGSLIFSEKYSFVLKGINRANSVSWNPHKMLG-APLQCSILLIKEKGLLHQANATAATYLFQQDKFYDV  203 (448)
Q Consensus       125 ~g~~l~VD~A~~~~~~~~~~~~~~~~~~~~aD~~~~s~hK~l~-~P~g~G~l~vr~~~~~~~~~~~~~~y~~~~~~~~~~  203 (448)
                      .|+++=.|-||+.+-.+..-..     . ++|+.+.++.|.+. +|.|+|.+++.++.. ....+...+|.         
T Consensus       243 kgc~VGfDLAHAvgNVpL~LHd-----W-gVDFACWCSYKYlnaGaGgIgGlFvHekh~-~~~~prl~GWw---------  306 (465)
T KOG3846|consen  243 KGCLVGFDLAHAVGNVPLQLHD-----W-GVDFACWCSYKYLNAGAGGIGGLFVHEKHT-KESLPRLAGWW---------  306 (465)
T ss_pred             CCcEechhhhhhhcCCceEEee-----c-CCceEEEeeecccccCCCccceeeeehhhh-cchhhHHhhhc---------
Confidence            8999999999998876544322     2 58999999999875 478899999866532 22111112222         


Q ss_pred             ccCCCCCcccCCCCchhHHHHHHHHHhChHHHHHHHHHhhhhccCCCccchhhhhhhhhhhhhhhhhhhhhhhccccccc
Q psy14299        204 SFDTGDKSVQCGRKVDAFKLWLMWKARGNLGFRHFVDNAVDCSRGSMTFSTLLCFDLQGLLHQANATAATYLFQQDKFYD  283 (448)
Q Consensus       204 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~g~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  283 (448)
                             +-+.+.||                                                          +-++-.+
T Consensus       307 -------gh~~s~RF----------------------------------------------------------~Mdnvl~  321 (465)
T KOG3846|consen  307 -------GHDPSKRF----------------------------------------------------------QMDNVLE  321 (465)
T ss_pred             -------cCCcchhh----------------------------------------------------------hhccccc
Confidence                   11222221                                                          1111111


Q ss_pred             cccCCCCCccccccchhhHHHHHHHHHhcCccHHHHHHHHHHHHHHHHHHhhcCCCeEEeccCCceeeEEEEee-ccCCC
Q psy14299        284 VSFDTGDKSVQCGRKVDAFKLWLMWKARGNLGFRHFVDNAVDCSRYFLSQISQRPGFRLVIPEFQCTNICFWFI-PVSLR  362 (448)
Q Consensus       284 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~~l~~~~~~~L~~~pg~~l~~~~~~~~~v~f~~~-~~~~~  362 (448)
                      +.-...|.+.+-+++.+..++...++.-.+-.+++++++..-++.|+...++...|..-   +.+..-.+|... |.+..
T Consensus       322 lipGa~GfRiSNPpi~~v~al~~SLe~F~q~~~~~lRkrS~lLTgYleyL~k~~~g~~~---~~rt~Kl~~~IiTP~~~~  398 (465)
T KOG3846|consen  322 LIPGALGFRISNPPIIDVVALRSSLELFAQFNINELRKRSLLLTGYLEYLLKASKGYKH---PLRTEKLFFTIITPTSTD  398 (465)
T ss_pred             cCccccccccCCCcHhHHHHHHhhHHHHHHhhHHHHhhhhhhHHhHHHHHHHHhcccCc---hhhhcceeEEEeCCcccc
Confidence            11122233333444556777777777777777999999999999999888887655321   111111111111 21111


Q ss_pred             ccccchhhhhhhhhhhHHHHHHHHhCCcEEEEeeecCCcccccEEEEEecCCCCCCHHHHHHHHHHHHHHHHHhH
Q psy14299        363 DKVEDETWWSTLSKVAPRIKEKLVLGGTLMIGYQPLQHRNLHNFFRLVTTCHPASSRQDMDYAIDQIELRGAEVD  437 (448)
Q Consensus       363 ~~~~~~~~~~~~~~~~~~i~~~L~~~g~~~~~~~~~~g~~~~~~lRis~~~~~~~t~edid~l~~al~~~~~~~~  437 (448)
                      .....  ..-..+.-+..+.+.|.++|.+ +.-   +.   ++.+|+.+. +.||+-.||-+++.+|.++...++
T Consensus       399 erGcQ--Lsl~Fssp~~~vfqeL~krGv~-~Dk---R~---PNvIRvAPv-pLYN~f~Dvy~f~n~L~e~~d~~e  463 (465)
T KOG3846|consen  399 ERGCQ--LSLYFSSPTPKVFQELHKRGVI-GDK---RR---PNVIRVAPV-PLYNTFSDVYIFVNALNEAMDKLE  463 (465)
T ss_pred             cccce--EEEEeCCCchHHHHHHHHcCee-ccc---cC---CCceEeecc-hhhccHHHHHHHHHHHHHHHHHhh
Confidence            00000  0000111234788999999933 221   11   378999999 999999999999999999987654

>PRK04013 argD acetylornithine/acetyl-lysine aminotransferase; Provisional

Probab=99.12  E-value=6.1e-08  Score=98.17  Aligned_cols=151  Identities=12%  Similarity=0.034  Sum_probs=95.2

Q ss_pred             cEEEeCcHHHHHHHHHHHHHHhcCCcccccCCCCCCCeEEEecCCCchHHHHHHHHhC-------CC--CCcEEEEecCC
Q psy14299          4 KPFLLPGGSISNMYSICLARYRLDPDTKRKGLSHLPPLCMFTSEDSHYSMLKAAHWLG-------IG--MDNVIRVKTNE   74 (448)
Q Consensus         4 ~g~~t~ggT~an~~al~~a~~~~~~~~~~~G~~~~~~~~Vl~~~~~H~s~~~~~~~~g-------~~--~~~v~~v~~~~   74 (448)
                      .++|+++||+|+-.|+..++...       |    .+.+|..+...|-...-+....+       ..  ...+..+|.+ 
T Consensus        83 ~v~~~~SGseA~e~Alklar~~~-------g----r~~Ii~~~~syHG~t~~~ls~~~~~~~~~~~~p~~~~~~~~~~~-  150 (364)
T PRK04013         83 YVYMGNSGTEAVEAALKFARLYT-------G----RKEIIAMTNAFHGRTMGALSATWKPKYREDFEPLVPGFKHIPFN-  150 (364)
T ss_pred             EEEEeCchHHHHHHHHHHHHHHh-------C----CCEEEEECCccccCchhhccCCCCcccccCCCCCCCCcEEecCC-
Confidence            47899999999999999998751       1    23345555555654433333211       11  0123333332 


Q ss_pred             CCCcCHHHHHHHHHHhhhcCCCcEEEEEeccCCcccccc-C---HHHHHHHHHHcCCEEEEecccccccccccchhhhhc
Q psy14299         75 RGQMICSFLEQTIQTSLAEKKIPLFVNATAGTTVLGAFD-P---LDEIATVCEKYDLWMHVDACWGGSLIFSEKYSFVLK  150 (448)
Q Consensus        75 ~g~id~e~Le~~l~~~~~~~~~~~lVv~~~~~t~tG~~~-~---l~~I~~ia~~~g~~l~VD~A~~~~~~~~~~~~~~~~  150 (448)
                          |++.+++.+.+      ++.+|++.......|... |   +++|.++|++||++++.|+++.+. -....+.....
T Consensus       151 ----d~~~l~~~i~~------~~aAvivEpi~g~gG~~~~~~~yl~~lr~lc~~~gillI~DEv~tG~-RtG~~~a~~~~  219 (364)
T PRK04013        151 ----DVEAAKEAITK------ETAAVIFEPIQGEGGIVPAKEEFVKTLRDLTEDVGALLIADEVQSGL-RTGKFLAIEHY  219 (364)
T ss_pred             ----CHHHHHHHhcC------CcEEEEEcCCcCCCCCcCCCHHHHHHHHHHHHHcCCEEEEechhhcC-CCCchhHHHhc
Confidence                77888888753      467888877776666554 3   999999999999999999998754 22111111122


Q ss_pred             CCCCccEEEECCccccCCCCceEEEEEecc
Q psy14299        151 GINRANSVSWNPHKMLGAPLQCSILLIKEK  180 (448)
Q Consensus       151 ~~~~aD~~~~s~hK~l~~P~g~G~l~vr~~  180 (448)
                      ++ ..|.+++  -|.+++-...|.++.+++
T Consensus       220 gv-~PDiv~~--gK~lggG~P~~a~~~~~~  246 (364)
T PRK04013        220 KV-EPDIVTM--GKGIGNGVPVSLTLTNFD  246 (364)
T ss_pred             CC-CCCEEEe--cccccCCceeEEEEeccc
Confidence            33 3688877  787765455677666543

>PRK07986 adenosylmethionine--8-amino-7-oxononanoate transaminase; Validated

Probab=99.11  E-value=2.2e-08  Score=103.58  Aligned_cols=164  Identities=13%  Similarity=0.069  Sum_probs=89.3

Q ss_pred             cEEEeCcHHHHHHHHHHHHHHhcCCcccccCCCCCCCeEEEecCCCchHHHHHHHHhCCC----------CCcEEEEecC
Q psy14299          4 KPFLLPGGSISNMYSICLARYRLDPDTKRKGLSHLPPLCMFTSEDSHYSMLKAAHWLGIG----------MDNVIRVKTN   73 (448)
Q Consensus         4 ~g~~t~ggT~an~~al~~a~~~~~~~~~~~G~~~~~~~~Vl~~~~~H~s~~~~~~~~g~~----------~~~v~~v~~~   73 (448)
                      .++|+++||+|+-.|+..+|....    ..| + ....+|......|-...-+....+-.          ...+..+|..
T Consensus       105 ~v~f~~SGsEAve~AlklAr~~~~----~~g-~-~r~kii~~~~~yHG~t~~a~s~~~~~~~~~~~~~~~~~~~~~~~~p  178 (428)
T PRK07986        105 CVFLADSGSVAVEVAMKMALQYWQ----AKG-E-PRQRFLTLRHGYHGDTFGAMSVCDPDNSMHSLYKGYLPENLFAPAP  178 (428)
T ss_pred             EEEEeCCcHHHHHHHHHHHHHHHH----hcC-C-CCcEEEEECCCcCCCcHhhhcccCCchhhhhccCCCCCCCEEECCC
Confidence            579999999999999999987411    011 0 12334555556665443333222210          0112233322


Q ss_pred             CCC------CcCHHHHHHHHHHhhhcCCCcEEEEEecc-CCccccc----cCHHHHHHHHHHcCCEEEEecccccccccc
Q psy14299         74 ERG------QMICSFLEQTIQTSLAEKKIPLFVNATAG-TTVLGAF----DPLDEIATVCEKYDLWMHVDACWGGSLIFS  142 (448)
Q Consensus        74 ~~g------~id~e~Le~~l~~~~~~~~~~~lVv~~~~-~t~tG~~----~~l~~I~~ia~~~g~~l~VD~A~~~~~~~~  142 (448)
                      ...      .-|++++++.++..   +.+..+|++.-. ....|.+    ..+++|.++|++||+++++|+++.+.-...
T Consensus       179 ~~~~~~~~~~~d~~~l~~~l~~~---~~~iaavi~Epi~~g~gg~~~~~~~~L~~l~~lc~~~g~lLI~DEv~tG~GrtG  255 (428)
T PRK07986        179 QSRFDGEWDERDIAPFARLMAAH---RHEIAAVILEPIVQGAGGMRIYHPEWLKRVRKLCDREGILLIADEIATGFGRTG  255 (428)
T ss_pred             CcccchhhHHHHHHHHHHHHHhC---CCcEEEEEEechhcCcCCcccCCHHHHHHHHHHHHHcCCEEEEeccccCCccCC
Confidence            111      12567788877531   224445565543 4434543    338999999999999999999985421111


Q ss_pred             cchhhhhcCCCCccEEEECCccccCCC-CceEEEEEec
Q psy14299        143 EKYSFVLKGINRANSVSWNPHKMLGAP-LQCSILLIKE  179 (448)
Q Consensus       143 ~~~~~~~~~~~~aD~~~~s~hK~l~~P-~g~G~l~vr~  179 (448)
                      .-+.....++ ..|+++  ..|.+++- ..+|.+..++
T Consensus       256 ~~fa~~~~gv-~PDi~t--~gK~l~gG~~p~~av~~~~  290 (428)
T PRK07986        256 KLFACEHAGI-APDILC--LGKALTGGTMTLSATLTTR  290 (428)
T ss_pred             CeeeecccCC-CCCEEE--echhhhCCcccCcchhchH
Confidence            1101111233 258776  57877543 2455555554

>PRK08297 L-lysine aminotransferase; Provisional

Probab=99.11  E-value=5.7e-08  Score=101.02  Aligned_cols=157  Identities=13%  Similarity=0.136  Sum_probs=85.0

Q ss_pred             cEEEeCcHHHHHHHHHHHHHHhcCCcccccCCC-CCCCeEEEecCCCchHHHHHHHHhCCCCCc--------EEEEecCC
Q psy14299          4 KPFLLPGGSISNMYSICLARYRLDPDTKRKGLS-HLPPLCMFTSEDSHYSMLKAAHWLGIGMDN--------VIRVKTNE   74 (448)
Q Consensus         4 ~g~~t~ggT~an~~al~~a~~~~~~~~~~~G~~-~~~~~~Vl~~~~~H~s~~~~~~~~g~~~~~--------v~~v~~~~   74 (448)
                      .++|+++|||||-.|+..||.+........|.+ .....+|-.....|-...-+....+.....        ...++...
T Consensus       112 ~v~f~~SGsEAve~AlKlAr~~~~~~~~~~g~~~~~r~kii~~~~~yHG~t~~als~~~~~~~~~~~~~~~~~~~~~~~~  191 (443)
T PRK08297        112 HLFFVDGGALAVENALKVAFDWKSRKNEARGIDPALGTKVLHLRGAFHGRSGYTLSLTNTDPRKTARFPKFDWPRIDNPK  191 (443)
T ss_pred             EEEEeCchHHHHHHHHHHHHHHhhccccccCCCCCCCceEEEECCCcCCcchhhhhhcCCcccccccCCCCCccccCCCC
Confidence            579999999999999999986521000011210 012334555556665544444443321000        00011000


Q ss_pred             -C----C-C---------cCHHHHHHHHHHhhhcCCCcEEEEEeccCCccccc----cCHHHHHHHHHHcCCEEEEeccc
Q psy14299         75 -R----G-Q---------MICSFLEQTIQTSLAEKKIPLFVNATAGTTVLGAF----DPLDEIATVCEKYDLWMHVDACW  135 (448)
Q Consensus        75 -~----g-~---------id~e~Le~~l~~~~~~~~~~~lVv~~~~~t~tG~~----~~l~~I~~ia~~~g~~l~VD~A~  135 (448)
                       .    . .         -+++++++.+..   .+.++.+|++.-.....|.+    ..+++|.++|++||+++++|+.+
T Consensus       192 ~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~---~~~~iAavI~EPi~g~~G~~~pp~~yl~~lr~lc~~~g~llI~DEV~  268 (443)
T PRK08297        192 LRFPLPGEDLEEVEALEAEALAQARAAFER---HPHDIACFIAEPIQGEGGDNHFRPEFFAAMRELCDEHDALLIFDEVQ  268 (443)
T ss_pred             CCCCCcccccchhhHHHHHHHHHHHHHHHh---CCCcEEEEEEccccCCCCCcCCCHHHHHHHHHHHHHcCCEEEEechh
Confidence             0    0 0         023455555643   23356677777666666765    55999999999999999999998


Q ss_pred             ccccccccchhhhhcCCCCccEEEECCcccc
Q psy14299        136 GGSLIFSEKYSFVLKGINRANSVSWNPHKML  166 (448)
Q Consensus       136 ~~~~~~~~~~~~~~~~~~~aD~~~~s~hK~l  166 (448)
                      .+.-....-+.....++ ..|++++  .|.+
T Consensus       269 tGfGRtG~~~a~~~~gv-~PDiv~~--gK~l  296 (443)
T PRK08297        269 TGVGLTGTAWAYQQLGV-RPDIVAF--GKKT  296 (443)
T ss_pred             hccCccchHHHHHhcCC-CCCEEEe--cccc
Confidence            64311111111111233 3688875  7876

>PRK05965 hypothetical protein; Provisional

Probab=99.11  E-value=1e-07  Score=99.55  Aligned_cols=167  Identities=11%  Similarity=0.062  Sum_probs=95.0

Q ss_pred             cEEEeCcHHHHHHHHHHHHHHhcCCcccccCCCCCCCeEEEecCCCchHHHHHHHHhCC-------C--CCcEEEEecCC
Q psy14299          4 KPFLLPGGSISNMYSICLARYRLDPDTKRKGLSHLPPLCMFTSEDSHYSMLKAAHWLGI-------G--MDNVIRVKTNE   74 (448)
Q Consensus         4 ~g~~t~ggT~an~~al~~a~~~~~~~~~~~G~~~~~~~~Vl~~~~~H~s~~~~~~~~g~-------~--~~~v~~v~~~~   74 (448)
                      .++|+++||+||-.|+..||....    ..|.+ ....+|......|-...-+....+.       +  ...+..++.+.
T Consensus       109 ~v~f~~sGSEAve~AlKlAr~~~~----~~g~~-~r~kii~~~~~YHG~t~~a~s~t~~~~~~~~~~~~~~~~~~~~~~~  183 (459)
T PRK05965        109 HVYFTLGGSDAVDSAVRFIRHYWN----ATGRP-SKKQFISLERGYHGSSSVGAGLTALPAFHRGFDLPLPWQHKIPSPY  183 (459)
T ss_pred             EEEEeCChhHHHHHHHHHHHHHHH----hcCCC-CccEEEEecCCcCcccHHHHHhcCCchhhcccCCCCCCCEEcCCCc
Confidence            479999999999999999987521    11211 1223454555566554333333221       1  11123333221


Q ss_pred             CC----CcC--------HHHHHHHHHHhhhcCCCcEEEEEeccCCccccccC----HHHHHHHHHHcCCEEEEecccccc
Q psy14299         75 RG----QMI--------CSFLEQTIQTSLAEKKIPLFVNATAGTTVLGAFDP----LDEIATVCEKYDLWMHVDACWGGS  138 (448)
Q Consensus        75 ~g----~id--------~e~Le~~l~~~~~~~~~~~lVv~~~~~t~tG~~~~----l~~I~~ia~~~g~~l~VD~A~~~~  138 (448)
                      ..    .-|        ++++++.++..  .+....+|++.-.....|.+.|    +++|.++|++||+.+++|+.+.+.
T Consensus       184 ~~~~~~~~~~~~~~~~~~~~l~~~i~~~--~~~~iAAvIvEPiqg~gG~~~p~~~yl~~lr~lc~~~gillI~DEV~tGf  261 (459)
T PRK05965        184 PYRNPVGDDPQAIIAASVAALRAKVAEL--GADNVAAFFCEPIQGSGGVIVPPKGWLKAMREACRELGILFVADEVITGF  261 (459)
T ss_pred             ccccccCCChHHHHHHHHHHHHHHHHhc--CCCceEEEEEeccccCCCCccCCHHHHHHHHHHHHHcCCEEEEechhccC
Confidence            11    012        25677777531  1134556676665555566544    899999999999999999987654


Q ss_pred             cccccchhhhhcCCCCccEEEECCccccCCCC-ceEEEEEecc
Q psy14299        139 LIFSEKYSFVLKGINRANSVSWNPHKMLGAPL-QCSILLIKEK  180 (448)
Q Consensus       139 ~~~~~~~~~~~~~~~~aD~~~~s~hK~l~~P~-g~G~l~vr~~  180 (448)
                      --...-+.....++ ..|++++  -|.+++-+ ..|.++.+++
T Consensus       262 GRtG~~~a~~~~gv-~PDiv~~--gKgl~gG~~Pi~av~~~~~  301 (459)
T PRK05965        262 GRTGPLFACEAEGV-VPDLMTV--AKGLTSGYVPMGAVLMSDH  301 (459)
T ss_pred             ccCchhhhHhhcCC-CCCeEEe--chhhccCCcceeEEEEcHH
Confidence            21111111111233 3788887  68776553 5788777664

>PRK07030 adenosylmethionine--8-amino-7-oxononanoate transaminase; Provisional

Probab=99.10  E-value=7.3e-08  Score=100.78  Aligned_cols=166  Identities=15%  Similarity=0.116  Sum_probs=94.4

Q ss_pred             cEEEeCcHHHHHHHHHHHHHHhcCCcccccCCCCCCCeEEEecCCCchHHHHHHHHhCCCC---------CcEEEEecCC
Q psy14299          4 KPFLLPGGSISNMYSICLARYRLDPDTKRKGLSHLPPLCMFTSEDSHYSMLKAAHWLGIGM---------DNVIRVKTNE   74 (448)
Q Consensus         4 ~g~~t~ggT~an~~al~~a~~~~~~~~~~~G~~~~~~~~Vl~~~~~H~s~~~~~~~~g~~~---------~~v~~v~~~~   74 (448)
                      .++|+++||+||-.|+..||....    ..|-+ ....+|......|-...-+..+.+...         ..+..+|...
T Consensus       109 ~v~f~~sGsEAve~AlKlAr~~~~----~~g~t-~r~~ii~~~~~yHG~t~ga~s~~~~~~~~~~~~p~~~~~~~~p~~~  183 (466)
T PRK07030        109 RCFYADNGSSAIEVALKMSFHYWR----NRGKP-RKKRFVTLTNSYHGETLAAMSVGDVALFTETYKPLLLDTIKVPSPD  183 (466)
T ss_pred             EEEEeCCcHHHHHHHHHHHHHHHH----HhCCC-CCcEEEEECCCcCcccHHHHhccCCccccccCCccCCCCEEcCCCC
Confidence            578999999999999999986421    01111 122345555566655444444333210         0123333322


Q ss_pred             CCC------------cCHHHHHHHHHHhhhcCCCcEEEEEec-cCCccccccC----HHHHHHHHHHcCCEEEEeccccc
Q psy14299         75 RGQ------------MICSFLEQTIQTSLAEKKIPLFVNATA-GTTVLGAFDP----LDEIATVCEKYDLWMHVDACWGG  137 (448)
Q Consensus        75 ~g~------------id~e~Le~~l~~~~~~~~~~~lVv~~~-~~t~tG~~~~----l~~I~~ia~~~g~~l~VD~A~~~  137 (448)
                      ..+            -+++.+++.+++   .+....+|++.- .....|.+.|    +++|.++|++||+++++|+.+.+
T Consensus       184 ~~~~~~~~~~~~~~~~~l~~le~~~~~---~~~~iAAvi~EP~iqg~gG~~~~~~~yl~~lr~lc~~~g~llI~DEV~TG  260 (466)
T PRK07030        184 CYLRPEGMSWEEHSRRMFAHMEQTLAE---HHDEIAAVIVEPLIQGAGGMRMYHPVYLKLLREACDRYGVHLIHDEIAVG  260 (466)
T ss_pred             ccccccCCCHHHHHHHHHHHHHHHHHh---CCCceEEEEEecccccCCCcccCCHHHHHHHHHHHHHcCCEEEEeehhhC
Confidence            111            124566777753   223455566654 3454566544    89999999999999999998664


Q ss_pred             ccccccchhhhhcCCCCccEEEECCccccCCCC-ceEEEEEecc
Q psy14299        138 SLIFSEKYSFVLKGINRANSVSWNPHKMLGAPL-QCSILLIKEK  180 (448)
Q Consensus       138 ~~~~~~~~~~~~~~~~~aD~~~~s~hK~l~~P~-g~G~l~vr~~  180 (448)
                      .-....-+.....++ ..|++++  -|.+++-+ ..|.+..+++
T Consensus       261 fGRtG~~~a~~~~gv-~PDiv~~--gKgl~gG~~Pi~av~~~~e  301 (466)
T PRK07030        261 FGRTGTMFACEQAGI-RPDFLCL--SKALTGGYLPLAAVLTTDT  301 (466)
T ss_pred             cCccccchHHHhcCC-CCCEEee--ehhccCCcccceEEEecHH
Confidence            321111111111233 3788887  78776542 5777777654

>PRK08088 4-aminobutyrate aminotransferase; Validated

Probab=99.10  E-value=6.1e-08  Score=100.41  Aligned_cols=160  Identities=13%  Similarity=0.091  Sum_probs=95.9

Q ss_pred             cEEEeCcHHHHHHHHHHHHHHhcCCcccccCCCCCCCeEEEecCCCchHHHHHHHHhCC-C---------CCcEEE--Ee
Q psy14299          4 KPFLLPGGSISNMYSICLARYRLDPDTKRKGLSHLPPLCMFTSEDSHYSMLKAAHWLGI-G---------MDNVIR--VK   71 (448)
Q Consensus         4 ~g~~t~ggT~an~~al~~a~~~~~~~~~~~G~~~~~~~~Vl~~~~~H~s~~~~~~~~g~-~---------~~~v~~--v~   71 (448)
                      ..+|+++|++|+-.|+..++...           .+..+|.++...|-...-+....+. .         ...+..  +|
T Consensus       104 ~~~f~~sGsea~e~Alklar~~~-----------~r~~iv~~~~~yHG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p  172 (425)
T PRK08088        104 KTLLVTTGSEAVENAVKIARAAT-----------KRSGVIAFTGAYHGRTHYTLALTGKVNPYSAGMGLMPGHVYRALYP  172 (425)
T ss_pred             EEEEeCCcHHHHHHHHHHHHHHh-----------CCCeEEEECCccCCccHHHHHhhCCCCccccCCCCCCCCcEEcCCC
Confidence            56899999999999999988752           1344566677777766555443321 0         001111  22


Q ss_pred             cCCCCCcC----HHHHHHHHHHhhhcCCCcEEEEEeccCCccccccC----HHHHHHHHHHcCCEEEEeccccccccccc
Q psy14299         72 TNERGQMI----CSFLEQTIQTSLAEKKIPLFVNATAGTTVLGAFDP----LDEIATVCEKYDLWMHVDACWGGSLIFSE  143 (448)
Q Consensus        72 ~~~~g~id----~e~Le~~l~~~~~~~~~~~lVv~~~~~t~tG~~~~----l~~I~~ia~~~g~~l~VD~A~~~~~~~~~  143 (448)
                      .+.++ ++    ++.|++.++.. ..+..+.+|++.-.....|.+.+    +++|.++|++||+++++|.++++......
T Consensus       173 ~~~~~-~~~~~~~~~l~~~l~~~-~~~~~~aavi~Epi~~~~G~~~~~~~~~~~l~~l~~~~~~~lI~Dev~~g~g~~g~  250 (425)
T PRK08088        173 CPLHG-VSEDDAIASIERIFKND-AAPEDIAAIIIEPVQGEGGFYAASPAFMQRLRALCDEHGIMLIADEVQTGAGRTGT  250 (425)
T ss_pred             ccccC-ccHHHHHHHHHHHHHhc-cCCCceEEEEECcccCCCCCcCCCHHHHHHHHHHHHHcCCEEEEeccccCCCcCcc
Confidence            21221 22    45677777531 11234667777766666676666    99999999999999999999885322111


Q ss_pred             chhhhhcCCCCccEEEECCccccCCCCceEEEEEec
Q psy14299        144 KYSFVLKGINRANSVSWNPHKMLGAPLQCSILLIKE  179 (448)
Q Consensus       144 ~~~~~~~~~~~aD~~~~s~hK~l~~P~g~G~l~vr~  179 (448)
                      .......++ ..|+  .++.|.+++-..+|++..++
T Consensus       251 ~~~~~~~~~-~pdi--~s~sK~l~~G~rig~v~~~~  283 (425)
T PRK08088        251 LFAMEQMGV-AADL--TTFAKSIAGGFPLAGVTGRA  283 (425)
T ss_pred             hhHHhhcCC-CCCE--EEEeccccCCCcceeeEecH
Confidence            111111122 2454  55689887445567777744

>PRK07482 hypothetical protein; Provisional

Probab=99.10  E-value=1.8e-07  Score=97.83  Aligned_cols=167  Identities=19%  Similarity=0.134  Sum_probs=92.5

Q ss_pred             cEEEeCcHHHHHHHHHHHHHHhcCCcccccCCCCCCCeEEEecCCCchHHHHHHHHhCC-------C--CCcEEEEecCC
Q psy14299          4 KPFLLPGGSISNMYSICLARYRLDPDTKRKGLSHLPPLCMFTSEDSHYSMLKAAHWLGI-------G--MDNVIRVKTNE   74 (448)
Q Consensus         4 ~g~~t~ggT~an~~al~~a~~~~~~~~~~~G~~~~~~~~Vl~~~~~H~s~~~~~~~~g~-------~--~~~v~~v~~~~   74 (448)
                      -++|+++||+|+-.|+..||....    ..|.++ ...+|-.....|-...-+....+.       +  ...+..++.+.
T Consensus       113 ~v~f~~sGSEAve~AlKlAr~~~~----~~g~~~-r~~Ii~~~~~YHG~t~ga~s~~~~~~~~~~~~~~~~~~~~~~~p~  187 (461)
T PRK07482        113 KVYYGLSGSDANETQIKLVWYYNN----VLGRPE-KKKIISRWRGYHGSGVVTGSLTGLSLFHQHFDLPIARVLHTEAPH  187 (461)
T ss_pred             EEEEeCchHHHHHHHHHHHHHHHH----hcCCCC-CceEEEecCccCCccHhhhhccCCchhhhccCCCCCCCEEcCCCc
Confidence            468999999999999999986421    112211 222343444555433222222221       0  11123333221


Q ss_pred             CCC-------------cCHHHHHHHHHHhhhcCCCcEEEEEeccCCccccccC----HHHHHHHHHHcCCEEEEeccccc
Q psy14299         75 RGQ-------------MICSFLEQTIQTSLAEKKIPLFVNATAGTTVLGAFDP----LDEIATVCEKYDLWMHVDACWGG  137 (448)
Q Consensus        75 ~g~-------------id~e~Le~~l~~~~~~~~~~~lVv~~~~~t~tG~~~~----l~~I~~ia~~~g~~l~VD~A~~~  137 (448)
                      ..+             -+++.+++.+.+.  .+..+.+|++.-.....|.+.|    +++|.++|++||+++++|+.+.+
T Consensus       188 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~--~~~~iAAvi~EPvqg~gG~~~~~~~yl~~lr~lc~~~giLlI~DEV~tG  265 (461)
T PRK07482        188 YYRRADAGMSEEQFSAYCADELEELILAE--GPDTIAAFIAEPVLGTGGIVPPPAGYWPAIQAVLKKYDILLIADEVVTG  265 (461)
T ss_pred             cccccccCCCHHHHHHHHHHHHHHHHHhc--CCCcEEEEEECCccCCCCCcCCCHHHHHHHHHHHHHhCCEEEEeccccC
Confidence            111             1456777777431  1234556666655555566543    89999999999999999998765


Q ss_pred             ccccccchhhhhcCCCCccEEEECCccccCCCC-ceEEEEEecc
Q psy14299        138 SLIFSEKYSFVLKGINRANSVSWNPHKMLGAPL-QCSILLIKEK  180 (448)
Q Consensus       138 ~~~~~~~~~~~~~~~~~aD~~~~s~hK~l~~P~-g~G~l~vr~~  180 (448)
                      .--....+.....++ ..|++++  -|.+++-+ ..|.++.+++
T Consensus       266 fGRtG~~~a~~~~gv-~PDiv~~--gKgl~gG~~Pi~av~~~~~  306 (461)
T PRK07482        266 FGRLGSMFGSDHYGI-EPDLITV--AKGLTSAYAPLSGSIVGEK  306 (461)
T ss_pred             CCcCcchhhHHhcCC-CCCEEEE--ccccccCccccceeeecHH
Confidence            422111111111233 3788886  78876543 4667667654

>KOG2467|consensus

Probab=99.09  E-value=1.2e-08  Score=99.04  Aligned_cols=247  Identities=16%  Similarity=0.171  Sum_probs=150.4

Q ss_pred             CCCCcCHHHHHHHHHHhhhcCCCcEEEEEeccCCccccccCHHHHHHHHHHcCCEEEEecccccccccccchhhhhcCCC
Q psy14299         74 ERGQMICSFLEQTIQTSLAEKKIPLFVNATAGTTVLGAFDPLDEIATVCEKYDLWMHVDACWGGSLIFSEKYSFVLKGIN  153 (448)
Q Consensus        74 ~~g~id~e~Le~~l~~~~~~~~~~~lVv~~~~~t~tG~~~~l~~I~~ia~~~g~~l~VD~A~~~~~~~~~~~~~~~~~~~  153 (448)
                      ..|-||.|.||+.-..     .+|+++++  +.+...-..|.+++.+||.+.|+.++.|.||-.|.......+.   ..+
T Consensus       172 ~TG~IDYD~Le~~A~~-----frPk~iia--G~SaY~R~~DYaR~R~Iad~~gA~Lm~DMAHISgLVAA~vips---PFe  241 (477)
T KOG2467|consen  172 STGYIDYDKLEKTATL-----FRPKLIIA--GTSAYSRLIDYARFRKIADKVGAYLMADMAHISGLVAAGVIPS---PFE  241 (477)
T ss_pred             CCCceehHHHHHHHHh-----cCCcEEEe--ccccchhhccHHHHHHHHHhcCceeehhhhhHHHHHhcccCCC---ccc
Confidence            4689999999998766     47888766  3444567889999999999999999999998877653332221   234


Q ss_pred             CccEEEECCccccCCCCceEEEEEeccchhhhhccCCcccccccCcccccccCCCCCcccCCCCchhHHHHHHHHHhChH
Q psy14299        154 RANSVSWNPHKMLGAPLQCSILLIKEKGLLHQANATAATYLFQQDKFYDVSFDTGDKSVQCGRKVDAFKLWLMWKARGNL  233 (448)
Q Consensus       154 ~aD~~~~s~hK~l~~P~g~G~l~vr~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~  233 (448)
                      .+|+++.+.||.|.+|.|.-+||-+--.....-......|- -.++.+...+    .++|++..=               
T Consensus       242 y~DiVTTTTHKsLRGPRg~mIFyRkGvk~~~~k~g~~i~yd-lE~kINfaVF----P~lQGGPHN---------------  301 (477)
T KOG2467|consen  242 YCDIVTTTTHKSLRGPRGAMIFYRKGVKSIKPKQGKEILYD-LEDKINFAVF----PGLQGGPHN---------------  301 (477)
T ss_pred             ccceeeccccccccCCcceeEEEeccCCcCCCCCCCcceec-hhhhhhhhcc----ccccCCCCc---------------
Confidence            68999999999999999766655332111110000000111 0110000000    012222221               


Q ss_pred             HHHHHHHHhhhhccCCCccchhhhhhhhhhhhhhhhhhhhhhhccccccccccCCCCCccccccchhhHHHHHHHHHhcC
Q psy14299        234 GFRHFVDNAVDCSRGSMTFSTLLCFDLQGLLHQANATAATYLFQQDKFYDVSFDTGDKSVQCGRKVDAFKLWLMWKARGN  313 (448)
Q Consensus       234 g~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  313 (448)
                                                                                       --+-+++++|+-...
T Consensus       302 -----------------------------------------------------------------htIaalAvALkQa~t  316 (477)
T KOG2467|consen  302 -----------------------------------------------------------------HTIAALAVALKQAMT  316 (477)
T ss_pred             -----------------------------------------------------------------chHHHHHHHHHhhCC
Confidence                                                                             112344556665566


Q ss_pred             ccHHHHHHHHHHHHHHHHHHhhcCCCeEEeccCCceeeEEEEeeccCCCccccchhhhhhhhhhhHHHHHHHHhCCcEEE
Q psy14299        314 LGFRHFVDNAVDCSRYFLSQISQRPGFRLVIPEFQCTNICFWFIPVSLRDKVEDETWWSTLSKVAPRIKEKLVLGGTLMI  393 (448)
Q Consensus       314 ~G~~~~~~~~~~l~~~~~~~L~~~pg~~l~~~~~~~~~v~f~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~L~~~g~~~~  393 (448)
                      ..|.+..++..++++.+.+.|.++ |++++.+......+.+.+.|.++++.        ..+    .+++.+.    |.+
T Consensus       317 pefk~Yq~qV~~Nakala~~l~~~-Gy~lvtgGTDnHlvLvDLr~~G~dGa--------rvE----~vle~~~----I~~  379 (477)
T KOG2467|consen  317 PEFKEYQKQVLKNAKALASALISR-GYKLVTGGTDNHLVLVDLRPKGVDGA--------RVE----KVLELCH----IAL  379 (477)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHc-CceEecCCccceEEEEeccccCCchH--------HHH----HHHHHhh----hhh
Confidence            667778888889999999999998 99998444567888888888888753        222    2222211    111


Q ss_pred             EeeecCCc---ccccEEEEEecCCCCCC----HHHHHHHHHHHHHHHH
Q psy14299        394 GYQPLQHR---NLHNFFRLVTTCHPASS----RQDMDYAIDQIELRGA  434 (448)
Q Consensus       394 ~~~~~~g~---~~~~~lRis~~~~~~~t----~edid~l~~al~~~~~  434 (448)
                      .-....|.   --++.+|++.  -..||    ++|.++..+-|.+..+
T Consensus       380 NKNtvpGD~Sal~PgGiRiGt--PAmTsRG~~e~df~~v~~fi~~av~  425 (477)
T KOG2467|consen  380 NKNTVPGDKSALSPGGIRIGT--PAMTSRGFGEEDFEKVADFIDRAVK  425 (477)
T ss_pred             cCCcCCCCccccCCCceeccc--hhhcccCccHHHHHHHHHHHHHHHH
Confidence            11111111   1136799986  33444    6889888888877654

>PRK07481 hypothetical protein; Provisional

Probab=99.08  E-value=2.2e-07  Score=96.84  Aligned_cols=169  Identities=14%  Similarity=0.081  Sum_probs=93.6

Q ss_pred             cEEEeCcHHHHHHHHHHHHHHhcCCcccccCCCCCCCeEEEecCCCchHHHHHHHHhCCC---------CCcEEEEecCC
Q psy14299          4 KPFLLPGGSISNMYSICLARYRLDPDTKRKGLSHLPPLCMFTSEDSHYSMLKAAHWLGIG---------MDNVIRVKTNE   74 (448)
Q Consensus         4 ~g~~t~ggT~an~~al~~a~~~~~~~~~~~G~~~~~~~~Vl~~~~~H~s~~~~~~~~g~~---------~~~v~~v~~~~   74 (448)
                      .++|+++||+|+-.|+..||....    ..|.+ ....+|......|-...-+....+-.         ...+..++.+.
T Consensus       106 ~v~f~~sGsEAve~AlklAr~~~~----~~g~~-~r~~ii~~~~~yHG~t~ga~s~~~~~~~~~~~~~~~~g~~~~~~~~  180 (449)
T PRK07481        106 RVFFSSGGSDSVETALKLARQYWK----VRGQP-ERTKFISLKQGYHGTHFGGASVNGNTVFRRNYEPLLPGCFHVETPW  180 (449)
T ss_pred             EEEEcCchHHHHHHHHHHHHHHHH----hcCCC-CCcEEEEECCCcCCcchhhhccCCCcccccccCCCCCCCEEeCCCc
Confidence            478999999999999999987521    11211 12334555555665433333222210         00133333221


Q ss_pred             CCC-----cCHHHHHHHHHHh----h--hcCCCcEEEEEeccCCccccccC----HHHHHHHHHHcCCEEEEeccccccc
Q psy14299         75 RGQ-----MICSFLEQTIQTS----L--AEKKIPLFVNATAGTTVLGAFDP----LDEIATVCEKYDLWMHVDACWGGSL  139 (448)
Q Consensus        75 ~g~-----id~e~Le~~l~~~----~--~~~~~~~lVv~~~~~t~tG~~~~----l~~I~~ia~~~g~~l~VD~A~~~~~  139 (448)
                      ..+     -|++.+++.+.+.    .  ..+..+.+|++.-.....|.+.|    +++|.++|++||+++++|+.+.+.-
T Consensus       181 ~~~~~~~~~d~~~~~~~~~~~le~~i~~~~~~~iAAviiEPvqg~gG~~~~~~~fl~~lr~lc~~~g~llI~DEV~tGfG  260 (449)
T PRK07481        181 LYRNPFTEQDPEELARICARLLEREIAFQGPDTIAAFIAEPVQGAGGVIVPPANFWPLVREVCDRHGILLIADEVVTGFG  260 (449)
T ss_pred             ccccccCCCCHHHHHHHHHHHHHHHHHhcCCCcEEEEEEecccCCcCCccCCHHHHHHHHHHHHHcCCEEEEeehhhCcC
Confidence            110     1444444333211    1  11234666777766666677655    8999999999999999999876432


Q ss_pred             ccccchhhhhcCCCCccEEEECCccccCCCC-ceEEEEEecc
Q psy14299        140 IFSEKYSFVLKGINRANSVSWNPHKMLGAPL-QCSILLIKEK  180 (448)
Q Consensus       140 ~~~~~~~~~~~~~~~aD~~~~s~hK~l~~P~-g~G~l~vr~~  180 (448)
                      .....+.....++ ..|++++  .|.+++-+ .+|.+.++++
T Consensus       261 RtG~~~a~~~~gv-~PDiv~~--gKgl~gG~~Pi~av~~~~~  299 (449)
T PRK07481        261 RTGSWFGSRGWGV-KPDIMCL--AKGITSGYVPLGATMVNAR  299 (449)
T ss_pred             cCchhhHhhhcCC-CCCEEEE--eecccCCCcCceEEEEcHH
Confidence            1111111111233 3788887  78776532 4677777664

>PRK06916 adenosylmethionine--8-amino-7-oxononanoate transaminase; Provisional

Probab=99.08  E-value=1.1e-07  Score=99.25  Aligned_cols=166  Identities=14%  Similarity=0.107  Sum_probs=93.9

Q ss_pred             cEEEeCcHHHHHHHHHHHHHHhcCCcccccCCCCCCCeEEEecCCCchHHHHHHHHhCCCC---------CcEEEEecCC
Q psy14299          4 KPFLLPGGSISNMYSICLARYRLDPDTKRKGLSHLPPLCMFTSEDSHYSMLKAAHWLGIGM---------DNVIRVKTNE   74 (448)
Q Consensus         4 ~g~~t~ggT~an~~al~~a~~~~~~~~~~~G~~~~~~~~Vl~~~~~H~s~~~~~~~~g~~~---------~~v~~v~~~~   74 (448)
                      .++|+++||+||-.|+..||....    ..|.+ ....+|......|-...-+..+.+...         ..+..+|...
T Consensus       118 ~v~f~~SGseAve~AlklAr~~~~----~~g~t-gr~~ii~~~~~YHG~t~~als~s~~~~~~~~~~~~~~~~~~~p~p~  192 (460)
T PRK06916        118 KVFYSDSGATAVEIAIKMAFQYWQ----NKGKP-KKQRFVTLKNAYHGDTIGAVSVGAIDLFHQVYSSLLFEAIKMPYPY  192 (460)
T ss_pred             EEEEeCCcHHHHHHHHHHHHHHHH----hcCCC-CCcEEEEECCcCCcccHHhHhccCCcccccccCCCCCCCEEeCCCc
Confidence            578999999999999999987421    11221 123345556666665544444433210         0133343321


Q ss_pred             CC------------CcCHHHHHHHHHHhhhcCCCcEEEEEec-cCCccccccC----HHHHHHHHHHcCCEEEEeccccc
Q psy14299         75 RG------------QMICSFLEQTIQTSLAEKKIPLFVNATA-GTTVLGAFDP----LDEIATVCEKYDLWMHVDACWGG  137 (448)
Q Consensus        75 ~g------------~id~e~Le~~l~~~~~~~~~~~lVv~~~-~~t~tG~~~~----l~~I~~ia~~~g~~l~VD~A~~~  137 (448)
                      ..            .-+++.+++.++.   .+....+|++.- .....|.+.|    +++|.++|++||+++++|+.+.+
T Consensus       193 ~~~~~~~~~~~~~~~~~~~~l~~~l~~---~~~~iAAvi~EP~iqg~gG~~~~~~~fl~~lr~lc~~~g~llI~DEV~TG  269 (460)
T PRK06916        193 TYRSPYGNDKAEIVKKHLEELEELLKE---KHEEIAAIIVEPLVQGAGGMITMPKGYLKGLRNLCTKYNVLFITDEVATG  269 (460)
T ss_pred             ccccccCCChHHHHHHHHHHHHHHHHh---CCCcEEEEEEeccccCCCCcccCCHHHHHHHHHHHHHcCCEEEeechhhC
Confidence            10            0134566666653   123455566654 3455565533    89999999999999999998764


Q ss_pred             ccccccchhhhhcCCCCccEEEECCccccCCC-CceEEEEEecc
Q psy14299        138 SLIFSEKYSFVLKGINRANSVSWNPHKMLGAP-LQCSILLIKEK  180 (448)
Q Consensus       138 ~~~~~~~~~~~~~~~~~aD~~~~s~hK~l~~P-~g~G~l~vr~~  180 (448)
                      .--....+.....++ ..|++++  -|.+++- ..+|.+..+++
T Consensus       270 ~GRtG~~~a~~~~gv-~PDiv~~--gK~l~gG~~Pi~av~~~~e  310 (460)
T PRK06916        270 FGRTGKMFACEHENV-TPDIMTA--GKGLTGGYLPIAITVTTDE  310 (460)
T ss_pred             CCcCchhhHHHhcCC-CCCeeee--ehhhhcCccccceeeecHH
Confidence            311111111111233 3688775  7877654 25777777654

>PRK06931 diaminobutyrate--2-oxoglutarate aminotransferase; Provisional

Probab=99.08  E-value=3.4e-07  Score=95.63  Aligned_cols=160  Identities=21%  Similarity=0.138  Sum_probs=89.6

Q ss_pred             EEeCcHHHHHHHHHHHHHHhcCCcccccCCCCCCCeEEEecCCCchHHHHHHHHhCCC---------CCcEEEEecCCCC
Q psy14299          6 FLLPGGSISNMYSICLARYRLDPDTKRKGLSHLPPLCMFTSEDSHYSMLKAAHWLGIG---------MDNVIRVKTNERG   76 (448)
Q Consensus         6 ~~t~ggT~an~~al~~a~~~~~~~~~~~G~~~~~~~~Vl~~~~~H~s~~~~~~~~g~~---------~~~v~~v~~~~~g   76 (448)
                      +|+++||+|+-.|+..+|...       |    ...+|-.....|-...-+....+-.         ...+..+|.+...
T Consensus       125 f~~~SGsEAve~AlklAr~~t-------g----r~~Ii~~~~~yHG~t~~als~t~~~~~~~~~~~~~~~~~~~~~~~~~  193 (459)
T PRK06931        125 FTGPSGADAVEAAIKLAKTYT-------G----RSNVISFSGGYHGMTHGALAVTGNLSPKNAVNGLMPGVQFMPYPHEY  193 (459)
T ss_pred             EeCCCcHHHHHHHHHHHHHhc-------C----CCeEEEECCCcCCccHHHHhhcCCcccccCCCCCCCCcEEeCCCccc
Confidence            556899999999999998752       1    2233444555555444443333210         0123344433211


Q ss_pred             C--------cCHHHHHHHHHHhhh----cCCCcEEEEEeccCCccccccC----HHHHHHHHHHcCCEEEEecccccccc
Q psy14299         77 Q--------MICSFLEQTIQTSLA----EKKIPLFVNATAGTTVLGAFDP----LDEIATVCEKYDLWMHVDACWGGSLI  140 (448)
Q Consensus        77 ~--------id~e~Le~~l~~~~~----~~~~~~lVv~~~~~t~tG~~~~----l~~I~~ia~~~g~~l~VD~A~~~~~~  140 (448)
                      +        -+.+.+++.+++..+    .+.++.+|++.-.....|.+.|    +++|.++|++||+++++|+.+.+.--
T Consensus       194 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iAAvI~EPiqg~gG~~~~~~~yl~~lr~lc~~~g~LlI~DEV~tGfGR  273 (459)
T PRK06931        194 RCPLGIGGEAGVKALTYYFENFIEDVESGVRKPAAVILEAIQGEGGVNPAPVEWLQKIREVTQKHGILLIVDEVQAGFAR  273 (459)
T ss_pred             cccccCCchhHHHHHHHHHHHHHHhhhcCCCceEEEEEccccCCCCCcCCCHHHHHHHHHHHHHcCCEEEEecchhcCCc
Confidence            1        134445444443322    1223556666555555565544    89999999999999999998765322


Q ss_pred             cccchhhhhcCCCCccEEEECCccccCCCCceEEEEEec
Q psy14299        141 FSEKYSFVLKGINRANSVSWNPHKMLGAPLQCSILLIKE  179 (448)
Q Consensus       141 ~~~~~~~~~~~~~~aD~~~~s~hK~l~~P~g~G~l~vr~  179 (448)
                      ....+.....++ ..|.+++  -|.+++-..+|.+..++
T Consensus       274 tG~~~a~~~~gv-~PDivt~--gK~l~gG~Pi~av~~~~  309 (459)
T PRK06931        274 TGKMFAFEHAGI-EPDIIVM--SKAVGGGLPLAVLGIKK  309 (459)
T ss_pred             CchHHHhhhcCC-CCCEEEe--cccccCCcceeeeeeHH
Confidence            111111111233 3788887  68776545577766654

>PRK08742 adenosylmethionine--8-amino-7-oxononanoate transaminase; Provisional

Probab=99.07  E-value=2e-07  Score=97.53  Aligned_cols=166  Identities=12%  Similarity=0.037  Sum_probs=94.0

Q ss_pred             cEEEeCcHHHHHHHHHHHHHHhcCCcccccCCCCCCCeEEEecCCCchHHHHHHHHhCCCC---------CcEEEEecCC
Q psy14299          4 KPFLLPGGSISNMYSICLARYRLDPDTKRKGLSHLPPLCMFTSEDSHYSMLKAAHWLGIGM---------DNVIRVKTNE   74 (448)
Q Consensus         4 ~g~~t~ggT~an~~al~~a~~~~~~~~~~~G~~~~~~~~Vl~~~~~H~s~~~~~~~~g~~~---------~~v~~v~~~~   74 (448)
                      .++|+++||+||-.|+..||.....    .|-+ ....+|......|-...-+....+...         ..+..+|.+.
T Consensus       131 ~v~f~~sGSEAvE~AlKlAr~~~~~----~g~~-~r~~ii~~~~syHG~t~gals~~~~~~~~~~~~p~~~~~~~~~~p~  205 (472)
T PRK08742        131 KVFYADNGSAGVEVALKMAFHYFHN----RGEH-RRTRFIALENGYHGETIGALAVGDIPLYRRVYAPLLLESLFAPSPD  205 (472)
T ss_pred             EEEEeCCchHHHHHHHHHHHHHHHh----cCCC-CCcEEEEECCCcCCCchhhhhccCCcccccccCCCCCCCEEeCCCC
Confidence            5799999999999999999875311    1211 123345555556655444433332210         0133344322


Q ss_pred             CCC------------cCHHHHHHHHHHhhhcCCCcEEEEEec-cCCccccccC----HHHHHHHHHHcCCEEEEeccccc
Q psy14299         75 RGQ------------MICSFLEQTIQTSLAEKKIPLFVNATA-GTTVLGAFDP----LDEIATVCEKYDLWMHVDACWGG  137 (448)
Q Consensus        75 ~g~------------id~e~Le~~l~~~~~~~~~~~lVv~~~-~~t~tG~~~~----l~~I~~ia~~~g~~l~VD~A~~~  137 (448)
                      ..+            -+++.+++.++.   .+..+.+|++.- .....|.+.|    ++++.++|++||+.+++|+.+.+
T Consensus       206 ~~~~~~~~~~~~~~~~~~~~l~~~~~~---~~~~iAAvI~EPviqg~gG~~~~p~~fl~~lr~lc~~~gillI~DEV~TG  282 (472)
T PRK08742        206 AYLAEPGQSAEDYALQAADALQALFEQ---SPGEICALILEPRLQCAGGMRMHHPAYLRRARELCDAHGAFLIADEIATG  282 (472)
T ss_pred             ccccccCCCHHHHHHHHHHHHHHHHHh---CCCceEEEEEccccccCCCcccCCHHHHHHHHHHHHHcCCEEEEechhhC
Confidence            111            135666777653   123455555554 2444565433    89999999999999999998664


Q ss_pred             ccccccchhhhhcCCCCccEEEECCccccCCCC-ceEEEEEecc
Q psy14299        138 SLIFSEKYSFVLKGINRANSVSWNPHKMLGAPL-QCSILLIKEK  180 (448)
Q Consensus       138 ~~~~~~~~~~~~~~~~~aD~~~~s~hK~l~~P~-g~G~l~vr~~  180 (448)
                      .-....-+.....++ ..|++++  -|.+++-+ ..|.++.+++
T Consensus       283 fGRtG~~~a~e~~gv-~PDiv~~--gKgl~gG~~Plaav~~~~e  323 (472)
T PRK08742        283 FGRTGTLFACEQAGV-MPDLLCL--SKGLTGGFLPLSAVLATQQ  323 (472)
T ss_pred             CCCCccchHHHhcCC-CCCEEEE--cccccCCCCCcceeeccHH
Confidence            322111111111233 3788887  78776542 4677777654

>PRK06918 4-aminobutyrate aminotransferase; Reviewed

Probab=99.07  E-value=2.8e-07  Score=96.18  Aligned_cols=162  Identities=14%  Similarity=0.087  Sum_probs=87.5

Q ss_pred             cEEEeCcHHHHHHHHHHHHHHhcCCcccccCCCCCCCeEEEecCCCchHHHHHHHHhCC--------C--CCcEEEEecC
Q psy14299          4 KPFLLPGGSISNMYSICLARYRLDPDTKRKGLSHLPPLCMFTSEDSHYSMLKAAHWLGI--------G--MDNVIRVKTN   73 (448)
Q Consensus         4 ~g~~t~ggT~an~~al~~a~~~~~~~~~~~G~~~~~~~~Vl~~~~~H~s~~~~~~~~g~--------~--~~~v~~v~~~   73 (448)
                      .++|+++||+||-.|+..||..-       |    ...+|-.....|-...-+....+-        +  ...+..+|..
T Consensus       117 ~v~f~~sGseA~e~AlklAr~~t-------g----r~~ii~~~~~yHG~t~~~ls~~~~~~~~~~~~~~~~~~~~~~~~~  185 (451)
T PRK06918        117 KVLFLNSGAEAVENAVKIARKYT-------K----RQGIISFSRGFHGRTLMTMTMTSKVKPYKFGFGPFAPEVYKAPFP  185 (451)
T ss_pred             EEEEcCCcHHHHHHHHHHHHHHh-------C----CCcEEEECCCcCccchhhhhhcCCCccccccCCCCCCCcEEcCCC
Confidence            57999999999999999998752       1    223444455556544444333221        0  0123334332


Q ss_pred             CCC----CcC--------HHHHHHHHHHhhhcCCCcEEEEEeccCCccccccC----HHHHHHHHHHcCCEEEEeccccc
Q psy14299         74 ERG----QMI--------CSFLEQTIQTSLAEKKIPLFVNATAGTTVLGAFDP----LDEIATVCEKYDLWMHVDACWGG  137 (448)
Q Consensus        74 ~~g----~id--------~e~Le~~l~~~~~~~~~~~lVv~~~~~t~tG~~~~----l~~I~~ia~~~g~~l~VD~A~~~  137 (448)
                      ...    .+.        .+.+++.+... ..+..+.+|++.-.....|.+.|    +++|.++|++||++++.|+.+.+
T Consensus       186 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~iAavi~EPi~g~gG~~~~~~~~l~~l~~l~~~~gillI~DEV~tg  264 (451)
T PRK06918        186 YEYRRPEGLTEEQYDDFMIEEFKNFFISE-VAPETIAAVVMEPVQGEGGFIVPSKKFVQEVRNICSEHGILFVADEIQTG  264 (451)
T ss_pred             ccccccccCchHHHHHHHHHHHHHHHHhh-cCCCceEEEEECcccCCCCCccCCHHHHHHHHHHHHHcCCEEEEeccccC
Confidence            110    111        12233333211 01223445555544444465433    88999999999999999998765


Q ss_pred             ccccccchhhhhcCCCCccEEEECCccccCCCCceEEEEEecc
Q psy14299        138 SLIFSEKYSFVLKGINRANSVSWNPHKMLGAPLQCSILLIKEK  180 (448)
Q Consensus       138 ~~~~~~~~~~~~~~~~~aD~~~~s~hK~l~~P~g~G~l~vr~~  180 (448)
                      .......+.....++ ..|++  +..|.+++-..+|.++.+++
T Consensus       265 ~gr~g~~~a~~~~~v-~pDi~--t~sK~l~~G~pig~v~~~~~  304 (451)
T PRK06918        265 FARTGKYFAIEHFDV-VPDLI--TVSKSLGAGVPISGVIGRKE  304 (451)
T ss_pred             cCccCceehhHhcCC-CCCEE--eeehhhcCCCccEEEEEcHH
Confidence            422111111111122 25744  56898875556788777543

>PRK07483 hypothetical protein; Provisional

Probab=99.06  E-value=4.3e-07  Score=94.47  Aligned_cols=167  Identities=19%  Similarity=0.194  Sum_probs=91.8

Q ss_pred             cEEEeCcHHHHHHHHHHHHHHhcCCcccccCCCCCCCeEEEecCCCchHHHHHHHHhCCC---------CCcEEEEecCC
Q psy14299          4 KPFLLPGGSISNMYSICLARYRLDPDTKRKGLSHLPPLCMFTSEDSHYSMLKAAHWLGIG---------MDNVIRVKTNE   74 (448)
Q Consensus         4 ~g~~t~ggT~an~~al~~a~~~~~~~~~~~G~~~~~~~~Vl~~~~~H~s~~~~~~~~g~~---------~~~v~~v~~~~   74 (448)
                      .++|+++||+||-.|+..||....    ..|.+ ....+|......|-...-+....+-.         ...+..++...
T Consensus        92 ~v~f~~sGsEAve~AlklAr~~~~----~~g~~-~r~~Ii~~~~~YHG~t~~a~s~s~~~~~~~~~~p~~~~~~~~~~~~  166 (443)
T PRK07483         92 HVYFVSGGSEAVEAALKLARQYFV----EIGQP-QRRHFIARRQSYHGNTLGALAIGGNAWRREPFAPLLIEAHHVSPCY  166 (443)
T ss_pred             EEEEcCCcHHHHHHHHHHHHHHHH----hcCCC-CCcEEEEECCCcCCcCHHHhhhcCCcccccccCCCCCCCEEeCCCc
Confidence            478999999999999999987521    11211 12223444556665544443333210         01123333221


Q ss_pred             CCCc-------------CHHHHHHHHHHhhhcCCCcEEEEEeccCC-ccccccC----HHHHHHHHHHcCCEEEEecccc
Q psy14299         75 RGQM-------------ICSFLEQTIQTSLAEKKIPLFVNATAGTT-VLGAFDP----LDEIATVCEKYDLWMHVDACWG  136 (448)
Q Consensus        75 ~g~i-------------d~e~Le~~l~~~~~~~~~~~lVv~~~~~t-~tG~~~~----l~~I~~ia~~~g~~l~VD~A~~  136 (448)
                      ..+-             .++++++.+...  ....+.+|++.-... ..|.+.|    +++|.++|++||+++++|+.+.
T Consensus       167 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~--~~~~iAAvivEPiqg~~gG~~~~~~~fl~~lr~lc~~~gillI~DEV~t  244 (443)
T PRK07483        167 AYREQRAGESDEAYGQRLADELEAKILEL--GPDTVAAFVAETVVGATAGAVPPVPGYFKRIREVCDRYGVLLILDEVMC  244 (443)
T ss_pred             cccccccCCCHHHHHHHHHHHHHHHHHhc--CCCceEEEEEeCcccCcCCeEeCCHHHHHHHHHHHHHhCCEEEEeccee
Confidence            1110             124566655421  112345566554443 2465554    8999999999999999999876


Q ss_pred             cccccccchhhhhcCCCCccEEEECCccccCCCC-ceEEEEEecc
Q psy14299        137 GSLIFSEKYSFVLKGINRANSVSWNPHKMLGAPL-QCSILLIKEK  180 (448)
Q Consensus       137 ~~~~~~~~~~~~~~~~~~aD~~~~s~hK~l~~P~-g~G~l~vr~~  180 (448)
                      +.--...-+.....++ ..|++++  -|.+++-+ ..|.+..+++
T Consensus       245 GfGRtG~~~a~~~~gv-~PDiv~~--gK~l~gG~~Pi~av~~~~~  286 (443)
T PRK07483        245 GMGRTGTLFACEEDGV-APDLVTI--AKGLGAGYQPIGAVLASDR  286 (443)
T ss_pred             CcccCcHHHHHhhcCC-CCCeeee--hhhhccCccccEEEEEcHH
Confidence            4322111111111233 3688887  78776543 5777777664

>PRK06209 glutamate-1-semialdehyde 2,1-aminomutase; Provisional

Probab=99.06  E-value=3.1e-08  Score=102.73  Aligned_cols=153  Identities=19%  Similarity=0.096  Sum_probs=84.5

Q ss_pred             cEEEeCcHHHHHHHHHHHHHHhcCCcccccCCCCCCCeEEEecCCCchHHHHH---HHHh--CCCC---CcEEEEecCCC
Q psy14299          4 KPFLLPGGSISNMYSICLARYRLDPDTKRKGLSHLPPLCMFTSEDSHYSMLKA---AHWL--GIGM---DNVIRVKTNER   75 (448)
Q Consensus         4 ~g~~t~ggT~an~~al~~a~~~~~~~~~~~G~~~~~~~~Vl~~~~~H~s~~~~---~~~~--g~~~---~~v~~v~~~~~   75 (448)
                      .++|+++||+||..|+..||...       |    ...++-+....+++....   ....  +...   ..+..++.+  
T Consensus       106 ~v~f~~sGseA~e~AlklAr~~t-------g----r~~i~~~~~~~~h~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~--  172 (431)
T PRK06209        106 MVKFCKNGSDATSAAVRLARAYT-------G----RDLVARCADHPFFSTDDWFIGTTPMSAGIPASVSALTVTFRYN--  172 (431)
T ss_pred             eEEEecCHHHHHHHHHHHHHHHh-------C----CCeEEEeccCccccccccccccCCCCCCCChhHhccccccCCC--
Confidence            47899999999999999998752       1    111222211111111100   0000  1100   012222322  


Q ss_pred             CCcCHHHHHHHHHHhhhcCCCcEEEEEeccCCccccccCHHHHHHHHHHcCCEEEEecccccccccccchhhhhcCCCCc
Q psy14299         76 GQMICSFLEQTIQTSLAEKKIPLFVNATAGTTVLGAFDPLDEIATVCEKYDLWMHVDACWGGSLIFSEKYSFVLKGINRA  155 (448)
Q Consensus        76 g~id~e~Le~~l~~~~~~~~~~~lVv~~~~~t~tG~~~~l~~I~~ia~~~g~~l~VD~A~~~~~~~~~~~~~~~~~~~~a  155 (448)
                         |+++|++.+++.   ..++.+|++.....+.+...++++|.++|++||+++++|+++.+.... ........++ ..
T Consensus       173 ---d~~~l~~~l~~~---~~~~aavi~Epv~g~~~~~~~l~~l~~lc~~~g~lLI~DEv~tG~~~~-~~g~~~~~gv-~P  244 (431)
T PRK06209        173 ---DIASLEALFEDH---PGRIACVILEPATADEPQDGFLHEVRRLCHENGALFILDEMITGFRWH-MRGAQKLYGI-VP  244 (431)
T ss_pred             ---CHHHHHHHHHhC---CCCEEEEEEccccCCCCCHHHHHHHHHHHHHcCCEEEEEcccccCCcC-cchhhHHhCC-Cc
Confidence               889999999642   124556666554444444555999999999999999999998543221 1000001133 35


Q ss_pred             cEEEECCccccCCCCceEEEEEec
Q psy14299        156 NSVSWNPHKMLGAPLQCSILLIKE  179 (448)
Q Consensus       156 D~~~~s~hK~l~~P~g~G~l~vr~  179 (448)
                      |.++  ..|.+++-...|.+..++
T Consensus       245 Di~t--~gK~lggG~p~~av~~~~  266 (431)
T PRK06209        245 DLSC--FGKALGNGFAVSALAGKR  266 (431)
T ss_pred             ceee--ehhhhcCCcccEEEEEHH
Confidence            7755  489887634456666654

>TIGR00699 GABAtrns_euk 4-aminobutyrate aminotransferase, eukaryotic type

Probab=99.05  E-value=3.7e-08  Score=102.51  Aligned_cols=159  Identities=11%  Similarity=-0.012  Sum_probs=91.0

Q ss_pred             cEEEeCcHHHHHHHHHHHHHHhcCCc---cc-----c--cC-----CCCCCC-eEEEecCCCchHHHHHHHHhCCCC---
Q psy14299          4 KPFLLPGGSISNMYSICLARYRLDPD---TK-----R--KG-----LSHLPP-LCMFTSEDSHYSMLKAAHWLGIGM---   64 (448)
Q Consensus         4 ~g~~t~ggT~an~~al~~a~~~~~~~---~~-----~--~G-----~~~~~~-~~Vl~~~~~H~s~~~~~~~~g~~~---   64 (448)
                      .++|+++|||||-.|+..||......   +.     +  +|     .++.++ .+|-.....|-...-+....+-..   
T Consensus       124 ~v~f~~SGsEAvE~AlKlAr~~~~~~~r~~~~~~t~~~~~~~~~~~~~g~~r~~ii~~~~syHG~t~~als~t~~~~~~~  203 (464)
T TIGR00699       124 QVWTGMSGSDANELAFKAAFMYYRSKQRGYQADFSEEENESCMDNQAPGSPDLSILSFKGAFHGRLFGSLSTTRSKPIHK  203 (464)
T ss_pred             EEEEeCCcHHHHHHHHHHHHHHHHhcCCCcccccccccccccccccccCCcCCEEEEECCCcCCccHHHHHhcCCccccc
Confidence            47999999999999999998642100   00     0  00     011112 345555666766555555443210   


Q ss_pred             -----CcEEEEecCCC----C----------CcCHHHHHHHHHHhhhcCCCcEEEEEeccCCccccccC----HHHHHHH
Q psy14299         65 -----DNVIRVKTNER----G----------QMICSFLEQTIQTSLAEKKIPLFVNATAGTTVLGAFDP----LDEIATV  121 (448)
Q Consensus        65 -----~~v~~v~~~~~----g----------~id~e~Le~~l~~~~~~~~~~~lVv~~~~~t~tG~~~~----l~~I~~i  121 (448)
                           ..+..+|.+..    .          .-+++.+++++++   .+..+.+|++.-.....|.+.|    +++|.++
T Consensus       204 ~~~~~~~~~~~p~p~~~~~~~~~~~~~~~~~~~~l~~l~~~l~~---~~~~iAAvI~EPv~g~~G~~~~~~~yl~~lr~l  280 (464)
T TIGR00699       204 LDIPAFDWPQAPFPSLKYPLEEHVKENAKEEQRCLEEVEDLIKK---WHKPVAAIIVEPIQSEGGDNHASPDFFRKLRDI  280 (464)
T ss_pred             cCCCCCCceecCCCCcccccccccccchhHHHHHHHHHHHHHHh---cCCcEEEEEEeCCCCCCCCcCCCHHHHHHHHHH
Confidence                 01122222210    0          0135567777753   1234667787777777788888    9999999


Q ss_pred             HHHcCCEEEEecccccccccccchhhhhcCCC-CccEEEECCccccC
Q psy14299        122 CEKYDLWMHVDACWGGSLIFSEKYSFVLKGIN-RANSVSWNPHKMLG  167 (448)
Q Consensus       122 a~~~g~~l~VD~A~~~~~~~~~~~~~~~~~~~-~aD~~~~s~hK~l~  167 (448)
                      |++||+++++|+.+.+.-....-+.....++. ..|++++  .|.++
T Consensus       281 c~~~g~lLI~DEV~tGfGrtG~~fa~e~~gv~~~PDi~t~--gK~lg  325 (464)
T TIGR00699       281 TKKHNVAFIVDEVQTGVGATGKFWAHEHWNLDDPPDMVTF--SKKFQ  325 (464)
T ss_pred             HHHcCCEEEEeeeeeCCCCCcchhHHHhcCCCCCCCEEEe--hhhhc
Confidence            99999999999987543211111111112332 3788666  78774

Alternate names include GABA transaminase, gamma-amino-N-butyrate transaminase, and beta-alanine--oxoglutarate aminotransferase.

>PRK05630 adenosylmethionine--8-amino-7-oxononanoate transaminase; Provisional

Probab=98.99  E-value=7e-07  Score=92.33  Aligned_cols=167  Identities=14%  Similarity=0.086  Sum_probs=86.4

Q ss_pred             cEEEeCcHHHHHHHHHHHHHHhcCCcccccCCCCCCCeEEEecCCCchHHHHHHHHhCCC----------CCcEEEEecC
Q psy14299          4 KPFLLPGGSISNMYSICLARYRLDPDTKRKGLSHLPPLCMFTSEDSHYSMLKAAHWLGIG----------MDNVIRVKTN   73 (448)
Q Consensus         4 ~g~~t~ggT~an~~al~~a~~~~~~~~~~~G~~~~~~~~Vl~~~~~H~s~~~~~~~~g~~----------~~~v~~v~~~   73 (448)
                      .++|+++||+||-.|+..||....    ..|.+ ....+|......|-...-+....+-.          ...+..+|.+
T Consensus       102 ~v~f~~SGseA~e~AlklAr~~~~----~~g~~-~r~~ii~~~~~yHG~t~~als~~~~~~~~~~~~~~~~~~~~~~p~~  176 (422)
T PRK05630        102 HVFYSDSGSVSVEVAIKMALQYSK----GQGHP-ERTRLLTWRSGYHGDTFAAMSVCDPEGGMHSLWKGTLPEQIFAPAP  176 (422)
T ss_pred             EEEEeCCcHHHHHHHHHHHHHHHH----hcCCC-CCcEEEEECCCcCCccHHHhccCCCcccccccccccCCCCeEcCCC
Confidence            578999999999999999987521    11211 12234555666665444333332210          0112333332


Q ss_pred             CCCCcCHHHHHH---HHHHhhhcCCCcEEEEEecc-CCccccc----cCHHHHHHHHHHcCCEEEEecccccccccccch
Q psy14299         74 ERGQMICSFLEQ---TIQTSLAEKKIPLFVNATAG-TTVLGAF----DPLDEIATVCEKYDLWMHVDACWGGSLIFSEKY  145 (448)
Q Consensus        74 ~~g~id~e~Le~---~l~~~~~~~~~~~lVv~~~~-~t~tG~~----~~l~~I~~ia~~~g~~l~VD~A~~~~~~~~~~~  145 (448)
                      .....+.+++++   .+++..+  .+..+|++.-. ....|.+    ..+++|.++|++||+++++|+++.+.-....-+
T Consensus       177 ~~~~~~~~~~~~~~~~~~~~~~--~~iAAvi~EPi~qg~gG~~~~~~~~l~~lr~lc~~~g~llI~DEv~tG~GrtG~~~  254 (422)
T PRK05630        177 PVRGSSPQEISEYLRSLELLID--ETVAAIIIEPIVQGAGGMRFHDVALIEGVRTLCDKHDILLIADEIATGFGRTGELF  254 (422)
T ss_pred             cccCCChHHHHHHHHHHHHHHh--hceEEEEEechhcCcCCcccCCHHHHHHHHHHHHHcCCEEEEecceeCCCcCchhh
Confidence            111112222222   2221111  13445555542 4444543    448999999999999999999975431111111


Q ss_pred             hhhhcCCCCccEEEECCccccCCC-CceEEEEEecc
Q psy14299        146 SFVLKGINRANSVSWNPHKMLGAP-LQCSILLIKEK  180 (448)
Q Consensus       146 ~~~~~~~~~aD~~~~s~hK~l~~P-~g~G~l~vr~~  180 (448)
                      .....++ ..|++++  -|.+++- ...|+++++++
T Consensus       255 a~~~~gv-~PDi~t~--gK~l~gG~~p~~av~~~~~  287 (422)
T PRK05630        255 ATLAAGV-TPDIMCV--GKALTGGFMSFAATLCTDK  287 (422)
T ss_pred             HHHhcCC-CCCeeee--echhhcCccccceeeccHH
Confidence            1111233 3688754  8988542 23565566554

>PRK07046 aminotransferase; Validated

Probab=98.98  E-value=5.8e-07  Score=93.73  Aligned_cols=151  Identities=15%  Similarity=0.089  Sum_probs=92.2

Q ss_pred             cEEEeCcHHHHHHHHHHHHHHhcCCcccccCCCCCCCeEEEecCCCchHHHHHHHH--h----------CCC---CCcEE
Q psy14299          4 KPFLLPGGSISNMYSICLARYRLDPDTKRKGLSHLPPLCMFTSEDSHYSMLKAAHW--L----------GIG---MDNVI   68 (448)
Q Consensus         4 ~g~~t~ggT~an~~al~~a~~~~~~~~~~~G~~~~~~~~Vl~~~~~H~s~~~~~~~--~----------g~~---~~~v~   68 (448)
                      .+.|+++||||+..|+..||..-       |    ...+|-.....|-........  .          |..   ...+.
T Consensus       132 ~v~F~nSGtEA~e~AlrlAR~~T-------G----r~~ii~~~g~YHG~~d~~l~~~~~~~~~~~~~~~g~~~~~~~~~~  200 (453)
T PRK07046        132 YWQVATTATDANRFVLRWARAVT-------G----RPKILVFNGCYHGTVDDVFVDLVDGRPVQRPGLLGQVHDLTATTR  200 (453)
T ss_pred             EEEEECCHHHHHHHHHHHHHHhh-------C----CCEEEEECCCCCCCcHHhHhhccCCCCCCCCCCCCCCccccCceE
Confidence            36899999999999999998752       1    223344444455432111110  0          110   01123


Q ss_pred             EEecCCCCCcCHHHHHHHHHHhhhcCCCcEEEEEeccCCccccccC----HHHHHHHHHHcCCEEEEecccccccccccc
Q psy14299         69 RVKTNERGQMICSFLEQTIQTSLAEKKIPLFVNATAGTTVLGAFDP----LDEIATVCEKYDLWMHVDACWGGSLIFSEK  144 (448)
Q Consensus        69 ~v~~~~~g~id~e~Le~~l~~~~~~~~~~~lVv~~~~~t~tG~~~~----l~~I~~ia~~~g~~l~VD~A~~~~~~~~~~  144 (448)
                      .+|.+     |++.+++.+..     ....+|++.-.....|.+.|    ++++.++|++||+++++|+.+.+..-+.. 
T Consensus       201 ~~~~n-----d~~~l~~~l~~-----~~vAavi~EPi~g~~G~~~p~~~fl~~lr~lc~~~g~llI~DEV~tfr~g~Gg-  269 (453)
T PRK07046        201 VVEFN-----DLAALEAALAD-----GDVAAVLAEPAMTNIGMVLPEPGFHEALRELTRRYGTLLVIDETHTISSGPGG-  269 (453)
T ss_pred             eeCCC-----CHHHHHHHhCC-----CCeEEEEECCCCCCCCCcCCCHHHHHHHHHHHHHhCCEEEEEccccCccCCcc-
Confidence            33332     88999998842     24566777666666676655    89999999999999999998751110000 


Q ss_pred             hhhhhcCCCCccEEEECCccccCCCCceEEEEEecc
Q psy14299        145 YSFVLKGINRANSVSWNPHKMLGAPLQCSILLIKEK  180 (448)
Q Consensus       145 ~~~~~~~~~~aD~~~~s~hK~l~~P~g~G~l~vr~~  180 (448)
                      ... ..++ ..|.+++  -|.+++-..+|.+..+++
T Consensus       270 ~~~-~~gv-~PDi~t~--gK~lggG~Pi~av~g~~~  301 (453)
T PRK07046        270 YTR-AHGL-EPDFLVV--GKPIAGGVPCAVYGFSAE  301 (453)
T ss_pred             hhH-HhCC-Cccceee--hhhhcCCCcceeeeehHH
Confidence            011 1134 3688775  788776566888777664

>KOG1404|consensus

Probab=98.90  E-value=1.2e-07  Score=93.21  Aligned_cols=294  Identities=14%  Similarity=0.132  Sum_probs=161.1

Q ss_pred             EEEeCcHHHHHHHHHHHHHHhcCCcccccCCCCCCCeEEEecCCCchHHHHHHHHhCCCCCcE----------EEEecCC
Q psy14299          5 PFLLPGGSISNMYSICLARYRLDPDTKRKGLSHLPPLCMFTSEDSHYSMLKAAHWLGIGMDNV----------IRVKTNE   74 (448)
Q Consensus         5 g~~t~ggT~an~~al~~a~~~~~~~~~~~G~~~~~~~~Vl~~~~~H~s~~~~~~~~g~~~~~v----------~~v~~~~   74 (448)
                      ++||++|||||-+|++.+|.+..           .-+.|-.....|-+-.-.+.+.+.+..+.          ..+.+++
T Consensus       112 vfF~nsGsEANelal~mar~Yt~-----------~~diIa~r~~YHG~t~~t~glt~~~~~k~~~~~~~~~~~~~~~Pdp  180 (442)
T KOG1404|consen  112 VFFVNSGSEANELALKMARLYTG-----------NLDIIARRNSYHGNTLYTLGLTGLSPWKQNFPGVASGVHHTMNPDP  180 (442)
T ss_pred             EEEecCCchHHHHHHHHHHHhcC-----------CceEEEeeccccCCchhhcccccCCcccccCCCCCCcccccCCCCc
Confidence            78999999999999999988632           33445555566666555555555432111          0111111


Q ss_pred             -----CCC---cCHHHHHHHHHHhhhc-C-CCcEEEEEeccCCccccccC----HHHHHHHHHHcCCEEEEecccccccc
Q psy14299         75 -----RGQ---MICSFLEQTIQTSLAE-K-KIPLFVNATAGTTVLGAFDP----LDEIATVCEKYDLWMHVDACWGGSLI  140 (448)
Q Consensus        75 -----~g~---id~e~Le~~l~~~~~~-~-~~~~lVv~~~~~t~tG~~~~----l~~I~~ia~~~g~~l~VD~A~~~~~~  140 (448)
                           .+.   --.+.+.+.+++.... + ..+...++......-|++.+    +++..++|+++|..++.|.++.+.--
T Consensus       181 ~r~~~~~~~~~e~~d~~a~~l~d~i~~~~~~~vAafiaEtIqGvgG~v~~p~GYlka~~~~v~k~Ggl~IaDEVqtGfGR  260 (442)
T KOG1404|consen  181 YRGIFGGSNEEEASDRYAKELEDLILYDGPETVAAFIAETIQGVGGIVELPPGYLKAAYKVVRKRGGLFIADEVQTGFGR  260 (442)
T ss_pred             ccccCCCCchhhhHHHHHHHHHHHHHhcCCCceeEEEeehhccCCccccCCchHHHHHHHHHHHcCCEEEehhhhhcccc
Confidence                 000   0122233322221111 1 22444555555565677766    89999999999999999998876433


Q ss_pred             cccchhhhhcCCCCccEEEECCccccCCCCceEEEEEeccchhhhhccCCcccccccCcccccccCCCCCcccCCCCchh
Q psy14299        141 FSEKYSFVLKGINRANSVSWNPHKMLGAPLQCSILLIKEKGLLHQANATAATYLFQQDKFYDVSFDTGDKSVQCGRKVDA  220 (448)
Q Consensus       141 ~~~~~~~~~~~~~~aD~~~~s~hK~l~~P~g~G~l~vr~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~  220 (448)
                      ...-|.+.-.++ .-|+++  ..|.++.-...|.++...+ +.... .....|++.-.                +.+...
T Consensus       261 tG~~wgfe~h~v-~PDIvT--mAKgiGnG~Pl~AVvtt~E-Ia~v~-~~~~~~fnTyg----------------gnP~a~  319 (442)
T KOG1404|consen  261 TGHMWGFESHGV-VPDIVT--MAKGIGNGFPLGAVVTTPE-IADVL-NQKSSHFNTYG----------------GNPVAC  319 (442)
T ss_pred             ccccccccccCC-CccHHH--HHhhccCCCcceeeecCHH-HHHHH-HhccccccccC----------------CCchhH
Confidence            222222211222 135444  4788887788888887664 32222 22222333211                112111


Q ss_pred             HHHHHHHHHhChHHHHHHHHHhhhhccCCCccchhhhhhhhhhhhhhhhhhhhhhhccccccccccCCCCCccccccchh
Q psy14299        221 FKLWLMWKARGNLGFRHFVDNAVDCSRGSMTFSTLLCFDLQGLLHQANATAATYLFQQDKFYDVSFDTGDKSVQCGRKVD  300 (448)
Q Consensus       221 ~~~~~~~~~~g~~g~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  300 (448)
                      ....++++.+                                                                      
T Consensus       320 avg~aVL~Vi----------------------------------------------------------------------  329 (442)
T KOG1404|consen  320 AVGLAVLKVI----------------------------------------------------------------------  329 (442)
T ss_pred             HHHHHHHHHH----------------------------------------------------------------------
Confidence            1111111111                                                                      


Q ss_pred             hHHHHHHHHHhcCccHHHHHHHHHHHHHHHHHHhhcCC-CeEEeccCCc--eeeEEEEeeccCCCccccchhhhhhhhhh
Q psy14299        301 AFKLWLMWKARGNLGFRHFVDNAVDCSRYFLSQISQRP-GFRLVIPEFQ--CTNICFWFIPVSLRDKVEDETWWSTLSKV  377 (448)
Q Consensus       301 ~~~~~~~~~~~~~~G~~~~~~~~~~l~~~~~~~L~~~p-g~~l~~~~~~--~~~v~f~~~~~~~~~~~~~~~~~~~~~~~  377 (448)
                                    -.|++.++......||.+.|.++. +.+++ .+.+  .-++-+.+.....+.  .+.++.     .
T Consensus       330 --------------kee~LqE~aa~vG~yl~~~l~~l~d~h~iI-GdVRG~GLm~GvE~V~dk~~~--~pp~~~-----~  387 (442)
T KOG1404|consen  330 --------------KEENLQENAAEVGSYLLEKLAALKDKHPII-GDVRGRGLMLGVELVSDKSEP--KPPATA-----E  387 (442)
T ss_pred             --------------HHHhHHHHHHHHHHHHHHHHHHHhhcCCce-eecccceeEEEEEEecccCCC--CCcchH-----H
Confidence                          124566777788999999988864 35666 4332  222333332111000  111111     2


Q ss_pred             hHHHHHHHHhCCcEEEEeeecCCcccccEEEEEecCCCCCCHHHHHHHHHHH
Q psy14299        378 APRIKEKLVLGGTLMIGYQPLQHRNLHNFFRLVTTCHPASSRQDMDYAIDQI  429 (448)
Q Consensus       378 ~~~i~~~L~~~g~~~~~~~~~~g~~~~~~lRis~~~~~~~t~edid~l~~al  429 (448)
                      ...+.+.+.+.| +.++-+.+.|    +.+|+++  -.-.|+||||.+++..
T Consensus       388 ~~~i~~~cke~G-vlvg~g~i~G----~vfriaP--PlciT~edi~f~~~~~  432 (442)
T KOG1404|consen  388 GAVIGEQCKELG-VLVGKGGIHG----NVFRIAP--PLCITKEDIDFAVEYF  432 (442)
T ss_pred             HHHHHHHHHHhC-eeeecccccc----eEEEecC--CeeccHHHHHHHHHHH
Confidence            347889999999 6667666666    4999999  5778999998777765

>COG0161 BioA Adenosylmethionine-8-amino-7-oxononanoate aminotransferase [Coenzyme metabolism]

Probab=98.84  E-value=1e-06  Score=89.88  Aligned_cols=161  Identities=19%  Similarity=0.181  Sum_probs=88.8

Q ss_pred             cEEEeCcHHHHHHHHHHHHHHhcCCcccccCCCCCCCeEEEecCCCchHHHHHHHHhCCCC----------CcEEEEecC
Q psy14299          4 KPFLLPGGSISNMYSICLARYRLDPDTKRKGLSHLPPLCMFTSEDSHYSMLKAAHWLGIGM----------DNVIRVKTN   73 (448)
Q Consensus         4 ~g~~t~ggT~an~~al~~a~~~~~~~~~~~G~~~~~~~~Vl~~~~~H~s~~~~~~~~g~~~----------~~v~~v~~~   73 (448)
                      .++||.|||+|+=.|+..++.+.    +..|.+ +....|-...-.|-+..-+.+..|...          ..+..+|.+
T Consensus       107 ~vFf~~sGSeAvEtAlKma~qY~----~~~G~p-~r~~~Isr~~gYHG~T~ga~Sv~g~~~~~~~~~~~ll~~~~~~~~P  181 (449)
T COG0161         107 HVFFTDSGSEAVETALKMALQYW----RARGQP-QRKKFISRRNGYHGDTLGAMSVGGPVALRHAFYDPLLPEVLHLPAP  181 (449)
T ss_pred             EEEEeCCchHHHHHHHHHHHHHH----HhcCCC-cceEEEEeccCcCcccchheeccCchhhhhhhccccccCceecCCC
Confidence            47999999999999999998764    234432 111123334556666655555555210          012233332


Q ss_pred             CC------CC------cCHHHHHHHHHHhhhcC-CCcEEEEEeccCCc-cccccC----HHHHHHHHHHcCCEEEEeccc
Q psy14299         74 ER------GQ------MICSFLEQTIQTSLAEK-KIPLFVNATAGTTV-LGAFDP----LDEIATVCEKYDLWMHVDACW  135 (448)
Q Consensus        74 ~~------g~------id~e~Le~~l~~~~~~~-~~~~lVv~~~~~t~-tG~~~~----l~~I~~ia~~~g~~l~VD~A~  135 (448)
                      ..      +.      -..++|++.|.+   .+ .+..++++.-.--. .|.+.|    ++++.++|++||++++.|+.-
T Consensus       182 ~~y~~~~~~~~~~~~~~~a~~le~~i~~---~g~~~IAAfI~EPv~g~agG~~~pp~~Yl~~vr~iC~ky~ILlI~DEV~  258 (449)
T COG0161         182 YAYRRGFFGEGDEEFAEAADELEALILE---HGPETIAAFIVEPVVGGAGGMLVPPPGYLKRVREICDKYGILLIADEVA  258 (449)
T ss_pred             cccccCCCCCChHHHHHHHHHHHHHHHh---cCcccEEEEEecccccccCCcccCChHHHHHHHHHHHHcCcEEEeecce
Confidence            21      11      124556666654   23 23444444443333 566655    899999999999999999953


Q ss_pred             cc-c---cc-cccchhhhhcCCCCccEEEECCccccCC-CCceEEEEEecc
Q psy14299        136 GG-S---LI-FSEKYSFVLKGINRANSVSWNPHKMLGA-PLQCSILLIKEK  180 (448)
Q Consensus       136 ~~-~---~~-~~~~~~~~~~~~~~aD~~~~s~hK~l~~-P~g~G~l~vr~~  180 (448)
                      .+ |   .+ .++.+     ++ .-|++++  .|.|.+ -...|.++++++
T Consensus       259 tGFGRTG~~FA~e~~-----gi-~PDi~~~--aKGLT~GY~Pl~a~l~~~~  301 (449)
T COG0161         259 TGFGRTGKMFACEHA-----GI-VPDILCL--AKGLTGGYLPLSAVLTSDR  301 (449)
T ss_pred             eCCCcCchhhhhhhc-----CC-CCCeeee--cccccccchhhHhHhhhHH
Confidence            33 2   22 22222     22 2577775  565532 223455556554

>KOG0053|consensus

Probab=98.78  E-value=2.2e-07  Score=93.12  Aligned_cols=139  Identities=14%  Similarity=0.123  Sum_probs=98.5

Q ss_pred             EEEeCcHHHHHHHHHHHHHHhcCCcccccCCCCCCCeEEEecCCCchH----HHHHHHHhCCCCCcEEEEecCCCCCcCH
Q psy14299          5 PFLLPGGSISNMYSICLARYRLDPDTKRKGLSHLPPLCMFTSEDSHYS----MLKAAHWLGIGMDNVIRVKTNERGQMIC   80 (448)
Q Consensus         5 g~~t~ggT~an~~al~~a~~~~~~~~~~~G~~~~~~~~Vl~~~~~H~s----~~~~~~~~g~~~~~v~~v~~~~~g~id~   80 (448)
                      ++..++|..|+..++.....              +++.|++...-+.-    +.+.....|+   ....+..+     |+
T Consensus        95 ~l~fsSGmaA~~~al~~L~~--------------~g~~iV~~~~~Y~gT~~~l~~~~~~~gi---e~~~vd~~-----~~  152 (409)
T KOG0053|consen   95 ALLFSSGMAAITVALLHLLP--------------AGDHIVATGDVYGGTLRILRKFLPKFGG---EGDFVDVD-----DL  152 (409)
T ss_pred             EEEecccHHHHHHHHHHhcC--------------CCCcEEEeCCCcccHHHHHHHHHHHhCc---eeeeechh-----hH
Confidence            56777777777777665543              34445555444433    3344445566   45555554     67


Q ss_pred             HHHHHHHHHhhhcCCCcEEEEEeccCCccccccCHHHHHHHHHHcCCEEEEecccccccccccchhhhhcCCCCccEEEE
Q psy14299         81 SFLEQTIQTSLAEKKIPLFVNATAGTTVLGAFDPLDEIATVCEKYDLWMHVDACWGGSLIFSEKYSFVLKGINRANSVSW  160 (448)
Q Consensus        81 e~Le~~l~~~~~~~~~~~lVv~~~~~t~tG~~~~l~~I~~ia~~~g~~l~VD~A~~~~~~~~~~~~~~~~~~~~aD~~~~  160 (448)
                      +++++++++      ++++|.+..++|++..+.||++|.++||++|+.++||.+++.... .+.++     + +||+++-
T Consensus       153 ~~~~~~i~~------~t~~V~~ESPsNPll~v~DI~~l~~la~~~g~~vvVDnTf~~p~~-~~pL~-----l-GADIV~h  219 (409)
T KOG0053|consen  153 KKILKAIKE------NTKAVFLESPSNPLLKVPDIEKLARLAHKYGFLVVVDNTFGSPYN-QDPLP-----L-GADIVVH  219 (409)
T ss_pred             HHHHHhhcc------CceEEEEECCCCCccccccHHHHHHHHhhCCCEEEEeCCcCcccc-cChhh-----c-CCCEEEE
Confidence            777777755      589999999999999999999999999999999999999997743 33222     1 4899999


Q ss_pred             CCccccCCCCc--eEEEEEe
Q psy14299        161 NPHKMLGAPLQ--CSILLIK  178 (448)
Q Consensus       161 s~hK~l~~P~g--~G~l~vr  178 (448)
                      |..|++++...  .|.+..+
T Consensus       220 SaTKyi~Ghsdvi~G~iv~n  239 (409)
T KOG0053|consen  220 SATKYIGGHSDVIGGSVVLN  239 (409)
T ss_pred             eeeeeecCCcceeeeEEecC
Confidence            99999998644  2444443

>COG1932 SerC Phosphoserine aminotransferase [Coenzyme metabolism / Amino acid transport and metabolism]

Probab=98.74  E-value=1.2e-06  Score=85.99  Aligned_cols=285  Identities=14%  Similarity=0.105  Sum_probs=167.2

Q ss_pred             CccEEEeCcHHHHHH-HHHHHHHHhcCCcccccCCCCCCCeEEEecCCCchHHHHHHHHhC-CCCCcEEEEec---CCCC
Q psy14299          2 NLKPFLLPGGSISNM-YSICLARYRLDPDTKRKGLSHLPPLCMFTSEDSHYSMLKAAHWLG-IGMDNVIRVKT---NERG   76 (448)
Q Consensus         2 ~~~g~~t~ggT~an~-~al~~a~~~~~~~~~~~G~~~~~~~~Vl~~~~~H~s~~~~~~~~g-~~~~~v~~v~~---~~~g   76 (448)
                      |..++|.+||..+-+ ++.+......            ..+.|....-+..+...+-.+.. .   ++.....   +...
T Consensus        68 ~Y~VlflqGGat~qf~~~p~nLl~~~------------~~~yv~~g~Ws~~a~~eA~~~~~~~---~~~~~~~~~~~~~~  132 (365)
T COG1932          68 DYKVLFLQGGATGQFAMAPMNLLGKR------------GTDYVDTGAWSEFAIKEAKKVGKQP---KLIDARIEEAGYGS  132 (365)
T ss_pred             CceEEEEcCccHHHHHHHHHhhhccc------------CceeEeeeehhHhHHHHHHHhcccc---cccccceeccCccC
Confidence            456788888887733 3333333220            11125555555555555555443 2   2222221   1122


Q ss_pred             CcCHHHHHHHHHHhhhcCCCcEEEEEeccCCccccccC-HHHHHHHHHHcCCEEEEecccccccccccchhhhhcCCCCc
Q psy14299         77 QMICSFLEQTIQTSLAEKKIPLFVNATAGTTVLGAFDP-LDEIATVCEKYDLWMHVDACWGGSLIFSEKYSFVLKGINRA  155 (448)
Q Consensus        77 ~id~e~Le~~l~~~~~~~~~~~lVv~~~~~t~tG~~~~-l~~I~~ia~~~g~~l~VD~A~~~~~~~~~~~~~~~~~~~~a  155 (448)
                      ..+++..+  +.+      ....|.+++.+|.+|+.-| .+.+..     +..+++|.+..+...++|-.        ..
T Consensus       133 iP~~~~~~--~~~------~~ayv~~~~NeTi~Gv~v~~~p~~~~-----~~~~v~D~SS~ilsr~iDvs--------k~  191 (365)
T COG1932         133 IPDLSKWD--FSD------NDAYVHFCWNETISGVEVPELPDIGS-----DGLLVADASSAILSRPIDVS--------KY  191 (365)
T ss_pred             CCChhhcc--cCC------CccEEEEecCCcccceEccCCCCCCC-----CceEEEecccHHhcCCCChh--------Hc
Confidence            34544443  221      1346999999999997655 222221     17899999888887766532        35


Q ss_pred             cEEEECCccccCCCCceEEEEEeccchhhhhccC-CcccccccCcccccccCCCCCcccCCCCchhHHHHHHHHHhChHH
Q psy14299        156 NSVSWNPHKMLGAPLQCSILLIKEKGLLHQANAT-AATYLFQQDKFYDVSFDTGDKSVQCGRKVDAFKLWLMWKARGNLG  234 (448)
Q Consensus       156 D~~~~s~hK~l~~P~g~G~l~vr~~~~~~~~~~~-~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~g  234 (448)
                      |.+.++.+|.+| |.|.+++++|++ ++....+. .|+.+.-..            .......++.              
T Consensus       192 dviyagaQKnlG-paGltvvIvr~~-~l~r~~~~~~P~if~y~~------------~~~~~s~yNT--------------  243 (365)
T COG1932         192 DVIYAGAQKNLG-PAGLTVVIVRPD-LLERAESYTLPSIFDYLT------------HADNGSMYNT--------------  243 (365)
T ss_pred             ceEEEehhhccC-ccceEEEEEcHH-HHhcccccCCchHhhchh------------hhccCCccCC--------------
Confidence            899999999997 888999999775 45554332 222221100            0000000100              


Q ss_pred             HHHHHHHhhhhccCCCccchhhhhhhhhhhhhhhhhhhhhhhccccccccccCCCCCccccccchhhHHHHHHHHHh-cC
Q psy14299        235 FRHFVDNAVDCSRGSMTFSTLLCFDLQGLLHQANATAATYLFQQDKFYDVSFDTGDKSVQCGRKVDAFKLWLMWKAR-GN  313 (448)
Q Consensus       235 ~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~  313 (448)
                                                                                   ++...+.-+...++|+ ++
T Consensus       244 -------------------------------------------------------------Pptfa~y~~~lv~~Wlk~~  262 (365)
T COG1932         244 -------------------------------------------------------------PPTFAWYLLGLVFKWLKSQ  262 (365)
T ss_pred             -------------------------------------------------------------cHHHHHHHHHHHHHHHHHc
Confidence                                                                         0111222334566655 56


Q ss_pred             ccHHHHHHHHHHHHHHHHHHhhcCCCeEEec-cC-C-ceeeEEEEeeccCCCccccchhhhhhhhhhhHHHHHHHHhCCc
Q psy14299        314 LGFRHFVDNAVDCSRYFLSQISQRPGFRLVI-PE-F-QCTNICFWFIPVSLRDKVEDETWWSTLSKVAPRIKEKLVLGGT  390 (448)
Q Consensus       314 ~G~~~~~~~~~~l~~~~~~~L~~~pg~~l~~-~~-~-~~~~v~f~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~L~~~g~  390 (448)
                      -|++.+.++..+.++.+++.+.+. +|-... .+ . ...+++|.+..+.                ++..+.+.+.++|.
T Consensus       263 GGl~~~~~rn~~ka~~LY~~id~s-~fy~~~v~~~~RS~mnV~f~~~~~~----------------ld~~fv~eae~~gl  325 (365)
T COG1932         263 GGLEALEARNQAKAQLLYDWIDKS-DFYRNLVAKANRSRMNVTFTLVDAE----------------LDKGFVAEAEAAGL  325 (365)
T ss_pred             CCHHHHHHHHHHHHHHHHHHHHhC-CccccccchhhccceeEEEEcCcHH----------------HHHHHHHHHHHcCC
Confidence            679999999999999999999998 543211 11 1 2466777654322                33578888888884


Q ss_pred             EEEEeeecCCcccccEEEEEecCCCCCCHHHHHHHHHHHHHHHHH
Q psy14299        391 LMIGYQPLQHRNLHNFFRLVTTCHPASSRQDMDYAIDQIELRGAE  435 (448)
Q Consensus       391 ~~~~~~~~~g~~~~~~lRis~~~~~~~t~edid~l~~al~~~~~~  435 (448)
                      +...+  ++-   .+.+|+|+  ......||++.|++-++++.+.
T Consensus       326 ~~lkG--hr~---vgGmRasi--ynA~~~e~veaL~~fm~~f~~~  363 (365)
T COG1932         326 IYLKG--HRS---VGGLRASI--YNAVPLEDVEALTDFMDWFEET  363 (365)
T ss_pred             ceecc--ccC---CCceeeee--ecCCCHHHHHHHHHHHHHHHHh
Confidence            44333  222   24499999  4567889999999999988764

>COG3977 Alanine-alpha-ketoisovalerate (or valine-pyruvate) aminotransferase [Amino acid transport and metabolism]

Probab=98.66  E-value=3e-06  Score=80.75  Aligned_cols=92  Identities=15%  Similarity=0.215  Sum_probs=63.9

Q ss_pred             CcCHHHHHHHHHHhhhcCCCcEEEEEeccCCccccc---cCHHHHHHHHHHcCCEEEEecccccccc---cccchhhhhc
Q psy14299         77 QMICSFLEQTIQTSLAEKKIPLFVNATAGTTVLGAF---DPLDEIATVCEKYDLWMHVDACWGGSLI---FSEKYSFVLK  150 (448)
Q Consensus        77 ~id~e~Le~~l~~~~~~~~~~~lVv~~~~~t~tG~~---~~l~~I~~ia~~~g~~l~VD~A~~~~~~---~~~~~~~~~~  150 (448)
                      ++|.++|+-.        ..+-+|+++-++|+||-+   +.+.+|.++|++||+++++|-|||..+-   +.|.... . 
T Consensus       168 ~vDF~~l~i~--------e~~g~ic~SRPtNPTGNVlTdeE~~kldalA~~~giPliIDnAYg~PFP~iifsd~~~~-w-  237 (417)
T COG3977         168 HVDFEHLHIG--------ESTGAICVSRPTNPTGNVLTDEELAKLDALARQHGIPLIIDNAYGVPFPGIIFSDATPL-W-  237 (417)
T ss_pred             ccCHHHcccc--------cccceEEecCCCCCCCCcccHHHHHHHHHHhhhcCCcEEEecccCCCCCceeccccccc-C-
Confidence            5666666432        356789999999999965   5588888999999999999999997542   2222111 1 


Q ss_pred             CCCCccEEEECCccccCCCCceEEEEEecc
Q psy14299        151 GINRANSVSWNPHKMLGAPLQCSILLIKEK  180 (448)
Q Consensus       151 ~~~~aD~~~~s~hK~l~~P~g~G~l~vr~~  180 (448)
                        ..-=.+++|..|....-.-||+++..++
T Consensus       238 --~~NiilC~SLSK~GLPG~R~GIiIane~  265 (417)
T COG3977         238 --NENIILCMSLSKLGLPGSRCGIIIANEK  265 (417)
T ss_pred             --CCCEEEEeehhhcCCCCcceeEEEccHH
Confidence              1123788999997664456787766443

>KOG1402|consensus

Probab=98.58  E-value=8.3e-06  Score=78.74  Aligned_cols=159  Identities=16%  Similarity=0.119  Sum_probs=91.1

Q ss_pred             EeCcHHHHHHHHHHHHHHhcCCcccccCCCCCCCeEEEecCCCchHHH---------HHHHHhCC-CCCcEEEEecCCCC
Q psy14299          7 LLPGGSISNMYSICLARYRLDPDTKRKGLSHLPPLCMFTSEDSHYSML---------KAAHWLGI-GMDNVIRVKTNERG   76 (448)
Q Consensus         7 ~t~ggT~an~~al~~a~~~~~~~~~~~G~~~~~~~~Vl~~~~~H~s~~---------~~~~~~g~-~~~~v~~v~~~~~g   76 (448)
                      =++.|.|++-.|+..+|.+.+   +.++++......+.+-..-|--..         .+..-.|- -+..+..||.+   
T Consensus       121 pmnTGaEa~Eta~KLaR~wgy---~~K~ip~nka~il~~~~nFhGrT~~ais~s~d~ds~~~fgp~~P~~~~~v~Y~---  194 (427)
T KOG1402|consen  121 PMNTGAEAVETACKLARKWGY---RKKNIPKNKAKILSAENNFHGRTLGAISLSTDPDSWDGFGPFLPGVVDKVPYG---  194 (427)
T ss_pred             ecccchhHHHHHHHHHHHHHH---hhccCCccceeEEEecccccCceeeeEEecCCcchhhccCCCCCCcceeeccC---
Confidence            356788999999999986532   333443111112222222221110         11111121 11126667766   


Q ss_pred             CcCHHHHHHHHHHhhhcCCCcEEEEEeccCCccccccC----HHHHHHHHHHcCCEEEEecccccccccccchhhhhcCC
Q psy14299         77 QMICSFLEQTIQTSLAEKKIPLFVNATAGTTVLGAFDP----LDEIATVCEKYDLWMHVDACWGGSLIFSEKYSFVLKGI  152 (448)
Q Consensus        77 ~id~e~Le~~l~~~~~~~~~~~lVv~~~~~t~tG~~~~----l~~I~~ia~~~g~~l~VD~A~~~~~~~~~~~~~~~~~~  152 (448)
                        |.++|+.+|+.     ++....++.-..-.-|++-|    ++++.++|++|+++++.|..|.+..-...-+......+
T Consensus       195 --d~eale~~l~~-----~~vaaFivEPIQGEaGVvvP~~GYL~~vreLCtkynvl~I~DEvQTGl~RTGk~la~d~env  267 (427)
T KOG1402|consen  195 --DAEALEVALKS-----PNVAAFIVEPIQGEAGVVVPPPGYLKKVRELCTKYNVLLIADEVQTGLARTGKLLACDYENV  267 (427)
T ss_pred             --CHHHHHHHhcC-----CCeeEEEeeccccccceEeCCchhHHHHHHHHHhhcEEEEehhhhhcccccCcEEEeehhhc
Confidence              89999999976     35666677666677787766    89999999999999999998887543211111111111


Q ss_pred             CCccEEEECCccccC-CCCceEEEEEeccc
Q psy14299        153 NRANSVSWNPHKMLG-APLQCSILLIKEKG  181 (448)
Q Consensus       153 ~~aD~~~~s~hK~l~-~P~g~G~l~vr~~~  181 (448)
                       .-|.+.+  .|.|. +-+..+.+++.++-
T Consensus       268 -~PDivil--gKalSGG~~Pvsavl~~~~i  294 (427)
T KOG1402|consen  268 -RPDIVIL--GKALSGGVYPVSAVLADDDI  294 (427)
T ss_pred             -CCCeEEE--eccccCCeeeeEEEEecHHH
Confidence             3577775  46543 34445555564443

>KOG0633|consensus

Probab=98.56  E-value=3.8e-06  Score=78.64  Aligned_cols=88  Identities=13%  Similarity=0.071  Sum_probs=67.0

Q ss_pred             EEecCCCchHHHHHHHHhCCCCCcEEEEecCCCCCcCHHHHHHHHHHhhhcCCCcEEEEEeccCCccccccCHHHHHHHH
Q psy14299         43 MFTSEDSHYSMLKAAHWLGIGMDNVIRVKTNERGQMICSFLEQTIQTSLAEKKIPLFVNATAGTTVLGAFDPLDEIATVC  122 (448)
Q Consensus        43 Vl~~~~~H~s~~~~~~~~g~~~~~v~~v~~~~~g~id~e~Le~~l~~~~~~~~~~~lVv~~~~~t~tG~~~~l~~I~~ia  122 (448)
                      |+.-+.++..+.-.+...++   .|+.+|.+++..++.+++.+.++.+    ..++++.++++.|+||..--.+.|-++.
T Consensus       114 Il~cPPtysMY~v~A~iNd~---eVvkvpl~pdF~lnvdai~evl~~d----s~iK~~F~tSPgNPtg~~ik~~di~KiL  186 (375)
T KOG0633|consen  114 ILDCPPTYSMYVVDAAINDA---EVVKVPLNPDFSLNVDAIAEVLELD----SKIKCIFLTSPGNPTGSIIKEDDILKIL  186 (375)
T ss_pred             eeecCCcceeEEEEeecCCc---eEEEecCCCCccccHHHHHHHHhcc----ccceEEEEcCCCCCCcccccHHHHHHHH
Confidence            44333343333333445566   7999999999999999999999874    3689999999999999988777777777


Q ss_pred             HHc-CCEEEEeccccc
Q psy14299        123 EKY-DLWMHVDACWGG  137 (448)
Q Consensus       123 ~~~-g~~l~VD~A~~~  137 (448)
                      .-- +..++||.|+--
T Consensus       187 e~p~nglVVvDEAYid  202 (375)
T KOG0633|consen  187 EMPDNGLVVVDEAYID  202 (375)
T ss_pred             hCCCCcEEEEeeeeEe
Confidence            543 789999998653

>KOG1401|consensus

Probab=98.49  E-value=0.00022  Score=71.02  Aligned_cols=161  Identities=17%  Similarity=0.126  Sum_probs=99.3

Q ss_pred             EEEeCcHHHHHHHHHHHHHHhcCCcccccCCCCCCCeEEEecCCCchHHHHHHHHhCCCCC---------cEEEEecCCC
Q psy14299          5 PFLLPGGSISNMYSICLARYRLDPDTKRKGLSHLPPLCMFTSEDSHYSMLKAAHWLGIGMD---------NVIRVKTNER   75 (448)
Q Consensus         5 g~~t~ggT~an~~al~~a~~~~~~~~~~~G~~~~~~~~Vl~~~~~H~s~~~~~~~~g~~~~---------~v~~v~~~~~   75 (448)
                      ++|.++||+||..|+..||+.-..+...     ..-..|......|---.-+....+..+.         .+...+.+  
T Consensus       119 vff~nsGTeAne~ALK~Ark~~~~~~~~-----~~t~~Iaf~nsyHG~tlgals~~~~s~y~~~~~p~~p~v~~~~yn--  191 (433)
T KOG1401|consen  119 VFFCNSGTEANETALKFARKFTGKKHPE-----KKTKFIAFENSYHGRTLGALSVTGNSKYGLPFDPIAPDVVTAEYN--  191 (433)
T ss_pred             EEEecCCcHHHHHHHHHHHHhhcccCCc-----cceeEEEEecCcCCcchhHHHhhcccccCCCCCCCCCceeecccC--
Confidence            6899999999999999999863211111     1112566666667544444433232110         12222322  


Q ss_pred             CCcCHHHHHHHHHHhhhcCCCcEEEEEeccCCccccc--cC--HHHHHHHHHHcCCEEEEecccccccccccchhhhhcC
Q psy14299         76 GQMICSFLEQTIQTSLAEKKIPLFVNATAGTTVLGAF--DP--LDEIATVCEKYDLWMHVDACWGGSLIFSEKYSFVLKG  151 (448)
Q Consensus        76 g~id~e~Le~~l~~~~~~~~~~~lVv~~~~~t~tG~~--~~--l~~I~~ia~~~g~~l~VD~A~~~~~~~~~~~~~~~~~  151 (448)
                         |+.++++.++..++   ...+|++.-..-.-|.+  +|  +..|.++|+++|+.++.|..+.+..-....|....-+
T Consensus       192 ---d~t~l~k~~~~h~~---~IaAVIvEPiqGaGG~~p~~peFl~~L~k~C~~~~vl~I~DEV~tG~gR~g~~~a~e~~~  265 (433)
T KOG1401|consen  192 ---DSTALEKLFESHKG---EIAAVIVEPIQGAGGIIPADPEFLIGLRKECDDNGVLLIFDEVQTGLGRLGYGWAQEYFG  265 (433)
T ss_pred             ---CHHHHHHHHHhCCC---ceEEEEEecccCCCCcccCCHHHHHHHHHHHhhcCceEEeehhhhCccccchHHHHHHhC
Confidence               79999999986321   24566666665544543  22  6788999999999999999887643333333322222


Q ss_pred             CCCccEEEECCccccCCCCceEEEEEeccc
Q psy14299        152 INRANSVSWNPHKMLGAPLQCSILLIKEKG  181 (448)
Q Consensus       152 ~~~aD~~~~s~hK~l~~P~g~G~l~vr~~~  181 (448)
                      + .-|+.++  -|.|++-...|+..++++.
T Consensus       266 ~-~PDI~t~--aK~L~gGlPigA~~v~~kV  292 (433)
T KOG1401|consen  266 V-TPDITTV--AKPLGGGLPIGATGVRDKV  292 (433)
T ss_pred             c-CCcceee--hhhccCCceeEEEeehHHH
Confidence            2 2576664  6877776778888888863

>KOG0258|consensus

Probab=98.48  E-value=3.2e-05  Score=76.34  Aligned_cols=122  Identities=11%  Similarity=0.049  Sum_probs=92.8

Q ss_pred             cEEEeCcHHHHHHHHHHHHHHhcCCcccccCCCCCCCeEEEecCCCchHHHHHHHHhCCCCCcEEEEecCCCCCcCHHHH
Q psy14299          4 KPFLLPGGSISNMYSICLARYRLDPDTKRKGLSHLPPLCMFTSEDSHYSMLKAAHWLGIGMDNVIRVKTNERGQMICSFL   83 (448)
Q Consensus         4 ~g~~t~ggT~an~~al~~a~~~~~~~~~~~G~~~~~~~~Vl~~~~~H~s~~~~~~~~g~~~~~v~~v~~~~~g~id~e~L   83 (448)
                      +.++|.|++.++...+......             +.+.|+++-.-++-+.....++|.... -.++.-+.+|.+|.++|
T Consensus       138 dI~LT~GAS~ai~~il~l~~~~-------------~~~GvliPiPQYPLYsAti~l~~~~~v-~YyLdEe~~W~ld~~el  203 (475)
T KOG0258|consen  138 DIFLTTGASPAIRSILSLLIAG-------------KKTGVLIPIPQYPLYSATISLLGGTQV-PYYLDEESNWSLDVAEL  203 (475)
T ss_pred             HeeecCCCcHHHHHHHHHHhcC-------------CCCceEeecCCCchhHHHHHHhCCccc-ceeeccccCCCCCHHHH
Confidence            4678999999987777666553             445577775555555555667776432 22344445899999999


Q ss_pred             HHHHHHhhhcCCCcEEEEEeccCCccccc---cCHHHHHHHHHHcCCEEEEecccccccc
Q psy14299         84 EQTIQTSLAEKKIPLFVNATAGTTVLGAF---DPLDEIATVCEKYDLWMHVDACWGGSLI  140 (448)
Q Consensus        84 e~~l~~~~~~~~~~~lVv~~~~~t~tG~~---~~l~~I~~ia~~~g~~l~VD~A~~~~~~  140 (448)
                      ++.+++.. .+.+|+++++..+-|+||.+   ..|++|..+|+++|+.++-|..|--+.+
T Consensus       204 ~~~~~eA~-k~i~~r~lvvINPGNPTGqvls~e~ie~i~~fa~~~~l~llaDEVYQ~Nvy  262 (475)
T KOG0258|consen  204 ERSVDEAR-KGINPRALVVINPGNPTGQVLSEENIEGIICFAAEEGLVLLADEVYQDNVY  262 (475)
T ss_pred             HHHHHHHh-ccCCceEEEEECCCCccchhhcHHHHHHHHHHHHHcCeEEechHHHHhhcc
Confidence            99999876 67789999999999999955   6799999999999999999997554443

>PLN02974 adenosylmethionine-8-amino-7-oxononanoate transaminase

Probab=98.45  E-value=0.00019  Score=79.52  Aligned_cols=97  Identities=15%  Similarity=0.187  Sum_probs=57.8

Q ss_pred             HHHHHHHHHhh--hcCCCcEEEEEecc-CCccccccC----HHHHHHHHHHcCCEEEEecccccccccccchhhhhcCCC
Q psy14299         81 SFLEQTIQTSL--AEKKIPLFVNATAG-TTVLGAFDP----LDEIATVCEKYDLWMHVDACWGGSLIFSEKYSFVLKGIN  153 (448)
Q Consensus        81 e~Le~~l~~~~--~~~~~~~lVv~~~~-~t~tG~~~~----l~~I~~ia~~~g~~l~VD~A~~~~~~~~~~~~~~~~~~~  153 (448)
                      +.+++.|++..  ..+.+..+|++.-. ....|.+.|    +++|.++|++||+++|+|+.+.+.--....+.....++ 
T Consensus       567 ~~le~~l~~~~~~~~~~~iAAvI~EPviqGaGGmi~~~~~yl~~lr~lc~~~gilLI~DEV~TGfGRtG~~fa~e~~gv-  645 (817)
T PLN02974        567 SYIEQQLDEYEASAKNGHIAALIIEPVLHGAGGMLLIDPLFQRALVQVCRSRKIPVIFDEVFTGLWRLGVESAWELLGC-  645 (817)
T ss_pred             HHHHHHHHhhccccCCCCEEEEEEeccccCCCCcccCCHHHHHHHHHHHHHhCCEEEEeecccCCCcccchhhHHhcCC-
Confidence            45666664311  11234445555442 344566644    89999999999999999998776432221111111233 


Q ss_pred             CccEEEECCccccCCC-CceEEEEEecc
Q psy14299        154 RANSVSWNPHKMLGAP-LQCSILLIKEK  180 (448)
Q Consensus       154 ~aD~~~~s~hK~l~~P-~g~G~l~vr~~  180 (448)
                      ..|++++  -|.+++- ...|.++++++
T Consensus       646 ~PDIi~~--gKgLtgG~~Plaa~l~~~~  671 (817)
T PLN02974        646 KPDIACY--AKLLTGGLVPLAATLATEE  671 (817)
T ss_pred             CCCEEee--cccccCCCCccEEEEEcHH
Confidence            3688886  6877654 35778777664

>COG1448 TyrB Aspartate/tyrosine/aromatic aminotransferase [Amino acid transport and metabolism]

Probab=98.43  E-value=4e-05  Score=75.85  Aligned_cols=145  Identities=13%  Similarity=0.034  Sum_probs=98.6

Q ss_pred             EEEeCcHHHHHHHHHHHHHHhcCCcccccCCCCCCCeEEEecCCCchHHHHHHHHhCCCCCcEEEEecC--CCCCcCHHH
Q psy14299          5 PFLLPGGSISNMYSICLARYRLDPDTKRKGLSHLPPLCMFTSEDSHYSMLKAAHWLGIGMDNVIRVKTN--ERGQMICSF   82 (448)
Q Consensus         5 g~~t~ggT~an~~al~~a~~~~~~~~~~~G~~~~~~~~Vl~~~~~H~s~~~~~~~~g~~~~~v~~v~~~--~~g~id~e~   82 (448)
                      .+=|+|||-|+-++.-.....            .|+..|++|+.+...-.....-.|+   ++.+.|.-  ++..+|.+.
T Consensus        97 t~Qt~GGTGAL~~~A~fl~~~------------~~~~~vwis~PtW~NH~~If~~aGl---~v~~Y~Yyd~~~~~~df~~  161 (396)
T COG1448          97 TVQTLGGTGALRVAADFLARF------------FPDATVWISDPTWPNHKAIFEAAGL---EVETYPYYDAETKGLDFDG  161 (396)
T ss_pred             heecCCcchHHHHHHHHHHHh------------CCCceEEeCCCCcHhHHHHHHhcCC---ceeeeeccccccccccHHH
Confidence            456899999988887655554            2666799999888777777777888   67666652  245689999


Q ss_pred             HHHHHHHhhhcCCCcEEEEEeccCCcccc---ccCHHHHHHHHHHcCCEEEEeccccccccccc--chhhh--hcCCCCc
Q psy14299         83 LEQTIQTSLAEKKIPLFVNATAGTTVLGA---FDPLDEIATVCEKYDLWMHVDACWGGSLIFSE--KYSFV--LKGINRA  155 (448)
Q Consensus        83 Le~~l~~~~~~~~~~~lVv~~~~~t~tG~---~~~l~~I~~ia~~~g~~l~VD~A~~~~~~~~~--~~~~~--~~~~~~a  155 (448)
                      +...|++.   .....++.=..+.||||.   .+..++|.++.++.|..-++|-||-+..--.+  .+..+  .... .-
T Consensus       162 mla~L~~a---~~~~vvLLH~CcHNPTG~D~t~~qW~~l~~~~~~r~lip~~D~AYQGF~~GleeDa~~lR~~a~~~-~~  237 (396)
T COG1448         162 MLADLKTA---PEGSVVLLHGCCHNPTGIDPTEEQWQELADLIKERGLIPFFDIAYQGFADGLEEDAYALRLFAEVG-PE  237 (396)
T ss_pred             HHHHHHhC---CCCCEEEEecCCCCCCCCCCCHHHHHHHHHHHHHcCCeeeeehhhhhhccchHHHHHHHHHHHHhC-Cc
Confidence            99988774   223333444557899995   45678899999999999999999665433222  22111  1111 11


Q ss_pred             cEEEECCccccCC
Q psy14299        156 NSVSWNPHKMLGA  168 (448)
Q Consensus       156 D~~~~s~hK~l~~  168 (448)
                      =+++.|+.|.++-
T Consensus       238 ~lva~S~SKnfgL  250 (396)
T COG1448         238 LLVASSFSKNFGL  250 (396)
T ss_pred             EEEEehhhhhhhh
Confidence            3677889997653

>KOG3843|consensus

Probab=98.43  E-value=3.3e-06  Score=79.12  Aligned_cols=153  Identities=16%  Similarity=0.103  Sum_probs=101.5

Q ss_pred             EEeCcHH-HHHHHHHHHHHHhcCCcccccCCCCCCCeEEEecCCCchHHHHHHHHhCCCCCcEEEEec--CCC-CCcCHH
Q psy14299          6 FLLPGGS-ISNMYSICLARYRLDPDTKRKGLSHLPPLCMFTSEDSHYSMLKAAHWLGIGMDNVIRVKT--NER-GQMICS   81 (448)
Q Consensus         6 ~~t~ggT-~an~~al~~a~~~~~~~~~~~G~~~~~~~~Vl~~~~~H~s~~~~~~~~g~~~~~v~~v~~--~~~-g~id~e   81 (448)
                      +.+|=+| |+.-+++...|.+. |          +...|+-.+....|-.+...-.|..+   +.++.  +.| -.-|++
T Consensus        79 ~vvpl~tgmslslc~~s~r~kr-p----------kakyiiw~ridqks~~ksi~~agfep---iiie~i~d~d~l~tdle  144 (432)
T KOG3843|consen   79 FVVPLATGMSLSLCFLSLRHKR-P----------KAKYIIWLRIDQKSCFKSIIHAGFEP---IIIENILDGDELITDLE  144 (432)
T ss_pred             eEEeccccccHHHHHHHHhhcC-C----------cccEEEEEecchHHHHHHHHhcCCCc---eeeeccccchHHHHhHH
Confidence            3444444 66666666666542 1          22346667888899889888888853   33332  222 366999


Q ss_pred             HHHHHHHHhhhcCCCcEEEEEeccCCcc---ccccCHHHHHHHHHHcCCEEEEecccccccccccchhhhhcCCCCccEE
Q psy14299         82 FLEQTIQTSLAEKKIPLFVNATAGTTVL---GAFDPLDEIATVCEKYDLWMHVDACWGGSLIFSEKYSFVLKGINRANSV  158 (448)
Q Consensus        82 ~Le~~l~~~~~~~~~~~lVv~~~~~t~t---G~~~~l~~I~~ia~~~g~~l~VD~A~~~~~~~~~~~~~~~~~~~~aD~~  158 (448)
                      .+++.+++.     .+..+.+.+.+|..   -.-+.+++|+.+|..|+++.+|.-|||.-.-..-+.-..-...+.+|.+
T Consensus       145 av~~~iee~-----g~dcilci~sttscfapr~pd~leaiaaica~~diphivnnayglqsee~i~~iaa~~~~grida~  219 (432)
T KOG3843|consen  145 AVEAIIEEL-----GEDCILCIHSTTSCFAPRSPDNLEAIAAICAAHDIPHIVNNAYGLQSEECIHKIAAAAECGRIDAF  219 (432)
T ss_pred             HHHHHHHHh-----CCceEEEEeecccccCCCCCchHHHHHHHHHccCchhhhccccccchHHHHHHHHHHhhhccHHHH
Confidence            999999873     24455555555532   2557899999999999999999999997432111111111223468999


Q ss_pred             EECCccccCCCCceEEEEE
Q psy14299        159 SWNPHKMLGAPLQCSILLI  177 (448)
Q Consensus       159 ~~s~hK~l~~P~g~G~l~v  177 (448)
                      +.|..|.+..|.|..++..
T Consensus       220 vqsldknf~vpvggaiia~  238 (432)
T KOG3843|consen  220 VQSLDKNFMVPVGGAIIAA  238 (432)
T ss_pred             HHHhhhcceeecchhHhhH
Confidence            9999999999998777544

>COG1921 SelA Selenocysteine synthase [seryl-tRNASer selenium transferase] [Amino acid transport and metabolism]

Probab=98.39  E-value=3.3e-06  Score=84.46  Aligned_cols=157  Identities=14%  Similarity=0.167  Sum_probs=104.7

Q ss_pred             cEEEeCcHHHHHHHHHHHHHHhcCCcccccCCCCCCCeEEEecCCCchHHHHHHHHhCCCCCcEEEEecCCCCCcCHHHH
Q psy14299          4 KPFLLPGGSISNMYSICLARYRLDPDTKRKGLSHLPPLCMFTSEDSHYSMLKAAHWLGIGMDNVIRVKTNERGQMICSFL   83 (448)
Q Consensus         4 ~g~~t~ggT~an~~al~~a~~~~~~~~~~~G~~~~~~~~Vl~~~~~H~s~~~~~~~~g~~~~~v~~v~~~~~g~id~e~L   83 (448)
                      .+.++++.+.+++..+.+.... ...+-..|        -+++ -.|+.+..++++.|.   +++.+.  ..++-...++
T Consensus        85 a~~ivnnn~aAVll~~~al~~~-~EvVis~g--------~lV~-gg~~~v~d~~~~aG~---~l~EvG--~tn~t~~~d~  149 (395)
T COG1921          85 AAAIVNNNAAAVLLTLNALAEG-KEVVVSRG--------ELVE-GGAFRVPDIIRLAGA---KLVEVG--TTNRTHLKDY  149 (395)
T ss_pred             heeeECCcHHHHHHHHhhhccC-CeEEEEcc--------cccc-CCCCChhHHHHHcCC---EEEEec--ccCcCCHHHH
Confidence            4667777777766665444331 00000000        1223 578999999999998   565554  4566788999


Q ss_pred             HHHHHHhhhcCCCcEEEEEeccCCcccc--ccCHHHHHHHHHHcCCEEEEecccccccccccchhhhhcCCCCccEEEEC
Q psy14299         84 EQTIQTSLAEKKIPLFVNATAGTTVLGA--FDPLDEIATVCEKYDLWMHVDACWGGSLIFSEKYSFVLKGINRANSVSWN  161 (448)
Q Consensus        84 e~~l~~~~~~~~~~~lVv~~~~~t~tG~--~~~l~~I~~ia~~~g~~l~VD~A~~~~~~~~~~~~~~~~~~~~aD~~~~s  161 (448)
                      +.+|.+      ++.++.-++.++. |.  .-++++++++||+||+++++|.|.|.-.-.-+..+..+.  .++|.+++|
T Consensus       150 ~~AIne------~ta~llkV~s~~~-~f~~~l~~~~l~~ia~~~~lpvivD~aSg~~v~~e~~l~~~la--~GaDLV~~S  220 (395)
T COG1921         150 ELAINE------NTALLLKVHSSNY-GFTGMLSEEELVEIAHEKGLPVIVDLASGALVDKEPDLREALA--LGADLVSFS  220 (395)
T ss_pred             HHHhcc------CCeeEEEEeeccc-cccccccHHHHHHHHHHcCCCEEEecCCccccccccchhHHHh--cCCCEEEEe
Confidence            999976      4667766776653 53  356788999999999999999988765332222222222  258999999


Q ss_pred             CccccCCCCceEEEEEeccchhhhh
Q psy14299        162 PHKMLGAPLQCSILLIKEKGLLHQA  186 (448)
Q Consensus       162 ~hK~l~~P~g~G~l~vr~~~~~~~~  186 (448)
                      ++|.|++|. .|++.. ++++....
T Consensus       221 gdKllgGPq-aGii~G-kKelI~~l  243 (395)
T COG1921         221 GDKLLGGPQ-AGIIVG-KKELIEKL  243 (395)
T ss_pred             cchhcCCCc-cceEec-hHHHHHHH
Confidence            999999997 666655 55666443

>COG3033 TnaA Tryptophanase [Amino acid transport and metabolism]

Probab=98.38  E-value=8e-05  Score=72.92  Aligned_cols=138  Identities=17%  Similarity=0.197  Sum_probs=87.3

Q ss_pred             CCeEEEecCCCchHHHHHHH-HhCCCCCcEEEEecC----------CCCCcCHHHHHHHHHHhhhcCCCcEEEEEeccCC
Q psy14299         39 PPLCMFTSEDSHYSMLKAAH-WLGIGMDNVIRVKTN----------ERGQMICSFLEQTIQTSLAEKKIPLFVNATAGTT  107 (448)
Q Consensus        39 ~~~~Vl~~~~~H~s~~~~~~-~~g~~~~~v~~v~~~----------~~g~id~e~Le~~l~~~~~~~~~~~lVv~~~~~t  107 (448)
                      |+.+.++..+.|...-.+-. ..|.   .++-++++          -.|.+|++.|++.|++-..+ .-|.++....+++
T Consensus       122 pg~~~~~~sN~~FdTTr~h~~~ng~---~~~n~~~~ea~d~~~~~pFKGd~D~~kLe~lidevG~~-nvp~I~~tiT~Ns  197 (471)
T COG3033         122 PGSKMVAFSNYHFDTTRGHIQINGA---TPRNVYVDEAFDTEVKYPFKGNFDLEKLERLIDEVGAD-NVPYIVLTITNNS  197 (471)
T ss_pred             CCccccccccceecchhHHHHhcCC---ccccccccccccccccCCCCCccCHHHHHHHHHHhCcc-cCcEEEEEEeccc
Confidence            44445556678876655543 3343   23333333          24789999999999874322 2344444444555


Q ss_pred             ccc---cccCHHHHHHHHHHcCCEEEEeccccc-ccccccchhh-----hhc-----CCCCccEEEECCccccCCCCceE
Q psy14299        108 VLG---AFDPLDEIATVCEKYDLWMHVDACWGG-SLIFSEKYSF-----VLK-----GINRANSVSWNPHKMLGAPLQCS  173 (448)
Q Consensus       108 ~tG---~~~~l~~I~~ia~~~g~~l~VD~A~~~-~~~~~~~~~~-----~~~-----~~~~aD~~~~s~hK~l~~P~g~G  173 (448)
                      .-|   .+..++++.++|++|++++++|+|.-+ ++.++.+...     .+.     -++.+|.++.|+-|=..++. .|
T Consensus       198 agGQpVSm~n~r~v~~ia~ky~ipvv~Da~RfaENaYFIk~rE~gYrd~sI~~IarEm~sYaD~~~mS~KKD~lvnm-GG  276 (471)
T COG3033         198 AGGQPVSMANMKAVYEIAKKYDIPVVMDAARFAENAYFIKQREPGYRDWSIEEIAREMYSYADGCTMSAKKDGLVNM-GG  276 (471)
T ss_pred             cCCCcchHHhHHHHHHHHHHcCCcEEeehhhhhhhhhhhhhcCcccccccHHHHHHHHHhhhhhheeeccccceecc-cc
Confidence            455   568899999999999999999998544 3333322111     111     12358999999999777776 36


Q ss_pred             EEEEeccc
Q psy14299        174 ILLIKEKG  181 (448)
Q Consensus       174 ~l~vr~~~  181 (448)
                      ++..+++.
T Consensus       277 fl~~~D~~  284 (471)
T COG3033         277 FLCFKDDS  284 (471)
T ss_pred             EEEecCcc
Confidence            77787774

>PF00202 Aminotran_3: Aminotransferase class-III; InterPro: IPR005814 Aminotransferases share certain mechanistic features with other pyridoxalphosphate-dependent enzymes, such as the covalent binding of the pyridoxalphosphate group to a lysine residue

Probab=98.26  E-value=8.1e-05  Score=74.83  Aligned_cols=167  Identities=19%  Similarity=0.125  Sum_probs=95.2

Q ss_pred             cEEEeCcHHHHHHHHHHHHHHhcCCcccccCCCCCCCeEEEecCCCchHHHHHHHHhCC---------CCCcEEEEecCC
Q psy14299          4 KPFLLPGGSISNMYSICLARYRLDPDTKRKGLSHLPPLCMFTSEDSHYSMLKAAHWLGI---------GMDNVIRVKTNE   74 (448)
Q Consensus         4 ~g~~t~ggT~an~~al~~a~~~~~~~~~~~G~~~~~~~~Vl~~~~~H~s~~~~~~~~g~---------~~~~v~~v~~~~   74 (448)
                      .++|+++||+||-.|+..++.+...... .    ....++-.....|-...-+....+-         ....+..+|.+.
T Consensus        78 ~v~f~~sGseAve~Alkla~~~~~~~~~-~----~r~~il~~~~~yHG~t~~~~s~~~~~~~~~~~~~~~~~~~~~p~~~  152 (339)
T PF00202_consen   78 RVFFANSGSEAVEAALKLARQYHNKRAY-T----GRRKILAFEGSYHGRTLGALSLTGNPPYRKGFGPLYPGVVFVPFPD  152 (339)
T ss_dssp             EEEEESSHHHHHHHHHHHHHHHHHHTHH-H----TTTEEEEETTTB-TSSHHHHHHSSSTHHHTTTCSSSTTEEEEETTC
T ss_pred             eeeeccCchHHHHHHHHHhhcccccccc-c----CCceEEEeeeeeeccCcccccccCCccccccccccccccccccCCc
Confidence            4789999999999999999822100000 0    1333444555666544333333211         112356667652


Q ss_pred             CCC-----cCHHHHHHHHHHhhhcCCCcEEEEEeccCCccccccC----HHHHHHHHHHcCCEEEEecccccccccccch
Q psy14299         75 RGQ-----MICSFLEQTIQTSLAEKKIPLFVNATAGTTVLGAFDP----LDEIATVCEKYDLWMHVDACWGGSLIFSEKY  145 (448)
Q Consensus        75 ~g~-----id~e~Le~~l~~~~~~~~~~~lVv~~~~~t~tG~~~~----l~~I~~ia~~~g~~l~VD~A~~~~~~~~~~~  145 (448)
                      ...     -..+.+++.+.+..  .....+|++.-.....|...+    +++|.++|++||+++++|+.+.+......-+
T Consensus       153 ~~~~~~~~~~~~~~~~~~~~~~--~~~iaavivEPi~g~~G~~~~~~~~l~~l~~lc~~~gillI~DEV~tG~gRtG~~~  230 (339)
T PF00202_consen  153 PAADEEEQACLNALEELIAALN--ADEIAAVIVEPIQGEGGMIPPPPEYLRELRELCREHGILLIADEVQTGFGRTGKFF  230 (339)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHH--GGGEEEEEEESSBTTTTSBEE-TTHHHHHHHHHHHTT-EEEEEETTTTTTTTSSSS
T ss_pred             cchhhhHHHHHHHHHHHHHhhc--CCcEEEEEEeccccccCccccccchhhehcccccccccceecccccccccccCCcc
Confidence            111     01122444443321  224556777666665665433    7999999999999999999887643211111


Q ss_pred             hhhhcCCCCccEEEECCccccCCCCceEEEEEecc
Q psy14299        146 SFVLKGINRANSVSWNPHKMLGAPLQCSILLIKEK  180 (448)
Q Consensus       146 ~~~~~~~~~aD~~~~s~hK~l~~P~g~G~l~vr~~  180 (448)
                      .....++ ..|+++++  |.+++-...|.++.+++
T Consensus       231 a~~~~gv-~PDiv~~g--K~l~gG~p~sav~~~~~  262 (339)
T PF00202_consen  231 ASEHYGV-DPDIVTFG--KGLGGGLPISAVLGSEE  262 (339)
T ss_dssp             GHHHHTS-SSSEEEEE--GGGGTTSSEEEEEEEHH
T ss_pred             ceecccc-cCcccccc--cchhhhhhcccccccch
Confidence            2222344 36999986  88876688888888775

On the basis of sequence similarity, these various enzymes can be grouped [] into subfamilies. One of these, called class-III, includes acetylornithine aminotransferase (2.6.1.11 from EC), which catalyzes the transfer of an amino group from acetylornithine to alpha-ketoglutarate, yielding N-acetyl-glutamic-5-semi-aldehyde and glutamic acid; ornithine aminotransferase (2.6.1.13 from EC), which catalyzes the transfer of an amino group from ornithine to alpha-ketoglutarate, yielding glutamic-5-semi-aldehyde and glutamic acid; omega-amino acid--pyruvate aminotransferase (2.6.1.18 from EC), which catalyzes transamination between a variety of omega-amino acids, mono- and diamines, and pyruvate; 4-aminobutyrate aminotransferase (2.6.1.19 from EC) (GABA transaminase), which catalyzes the transfer of an amino group from GABA to alpha-ketoglutarate, yielding succinate semialdehyde and glutamic acid; DAPA aminotransferase (2.6.1.62 from EC), a bacterial enzyme (bioA), which catalyzes an intermediate step in the biosynthesis of biotin, the transamination of 7-keto-8-aminopelargonic acid to form 7,8-diaminopelargonic acid; 2,2-dialkylglycine decarboxylase (4.1.1.64 from EC), a Burkholderia cepacia (Pseudomonas cepacia) enzyme (dgdA) that catalyzes the decarboxylating amino transfer of 2,2-dialkylglycine and pyruvate to dialkyl ketone, alanine and carbon dioxide; glutamate-1-semialdehyde aminotransferase (5.4.3.8 from EC) (GSA); Bacillus subtilis aminotransferases yhxA and yodT; Haemophilus influenzae aminotransferase HI0949; and Caenorhabditis elegans aminotransferase T01B11.2.; GO: 0008483 transaminase activity, 0030170 pyridoxal phosphate binding; PDB: 2JJE_A 2CJH_A 2CIN_A 2JJH_A 2JJF_A 2JJG_A 2CJG_A 2CJD_A 3BS8_A 2YKX_C ....

>PF12897 Aminotran_MocR: Alanine-glyoxylate amino-transferase; InterPro: IPR024551 This entry represents a family of putative aminotransferases

Probab=98.22  E-value=0.00078  Score=67.10  Aligned_cols=135  Identities=11%  Similarity=0.062  Sum_probs=80.0

Q ss_pred             CCeEEEecCCCchHHHHHHHHhCCCCCcEEEEecCCCCCcCHHHHHHHHHHhhhcCCCcEEEEE-eccCCccccccCHHH
Q psy14299         39 PPLCMFTSEDSHYSMLKAAHWLGIGMDNVIRVKTNERGQMICSFLEQTIQTSLAEKKIPLFVNA-TAGTTVLGAFDPLDE  117 (448)
Q Consensus        39 ~~~~Vl~~~~~H~s~~~~~~~~g~~~~~v~~v~~~~~g~id~e~Le~~l~~~~~~~~~~~lVv~-~~~~t~tG~~~~l~~  117 (448)
                      +....+|+...+---...|+.+|+   +.+.||.+++|. |++.+|+.+.++    ...|.+-+ ---+|++|....=+-
T Consensus       123 ~~vKfLCPvPGYDRHFai~E~~Gi---emi~VpM~~dGP-DmD~Ve~LV~~D----~svKGiWcVP~ySNPtG~tySde~  194 (425)
T PF12897_consen  123 EKVKFLCPVPGYDRHFAITEHFGI---EMIPVPMTEDGP-DMDMVEELVAED----PSVKGIWCVPKYSNPTGITYSDEV  194 (425)
T ss_dssp             S--EEEEEES--HHHHHHHHHCT----EEEEEEEETTEE--HHHHHHHTHTS----TTEEEEEE-SSS-TTT-----HHH
T ss_pred             cCceEEecCCCchHHHHHHHhhCc---EEEecCCCCCCC-CHHHHHHHHhcC----CccceEEeCCCccCCCCccCCHHH
Confidence            456789998887777888999999   899999988874 999999999764    34555443 446788998866555


Q ss_pred             HHHHH----HHcCCEEEEecccccccccccchh----h---hh--cCCCCccEEEECCccccCCCCceEEEEEeccc
Q psy14299        118 IATVC----EKYDLWMHVDACWGGSLIFSEKYS----F---VL--KGINRANSVSWNPHKMLGAPLQCSILLIKEKG  181 (448)
Q Consensus       118 I~~ia----~~~g~~l~VD~A~~~~~~~~~~~~----~---~~--~~~~~aD~~~~s~hK~l~~P~g~G~l~vr~~~  181 (448)
                      +.+++    ...+..++.|-||..+++..+...    .   .+  .|...-=+...|..|.-+.-.|.+++..+...
T Consensus       195 vrrlA~m~~AA~DFRI~WDNAY~vHhL~~~~~~~~~~nil~~~~~AGnpdrv~~F~STSKITf~GaGva~~aaS~~N  271 (425)
T PF12897_consen  195 VRRLAAMKTAAPDFRIFWDNAYAVHHLYDEEPRDALLNILDACAKAGNPDRVYVFASTSKITFPGAGVAFFAASEAN  271 (425)
T ss_dssp             HHHHHHS--SSTT-EEEEE-TTTT-BSSSSSS------HHHHHHHTT-TTSEEEEEESTTTS-TTSS-EEEEE-HHH
T ss_pred             HHHHhcCCcCCcCeEEEeecCceEeeccccccchhhhHHHHHHHHcCCCCeEEEEecccccccCCcceeeeecCHHH
Confidence            55555    457999999999999988322111    0   01  12212225667888987776777777776653

; PDB: 3D6K_C 3EZ1_A 3PPL_B.

>KOG2040|consensus

Probab=98.12  E-value=0.00026  Score=73.97  Aligned_cols=262  Identities=13%  Similarity=0.107  Sum_probs=156.7

Q ss_pred             EEEecCCCchHHHHHHHHh--CCCCCcEEEEecCCCCCcCHHHHHHHHHHhhhcCCCcEEEEEeccCCccccccCHHHHH
Q psy14299         42 CMFTSEDSHYSMLKAAHWL--GIGMDNVIRVKTNERGQMICSFLEQTIQTSLAEKKIPLFVNATAGTTVLGAFDPLDEIA  119 (448)
Q Consensus        42 ~Vl~~~~~H~s~~~~~~~~--g~~~~~v~~v~~~~~g~id~e~Le~~l~~~~~~~~~~~lVv~~~~~t~tG~~~~l~~I~  119 (448)
                      ..+++...|+.....++--  +.+   +. +.+.     |+++...-.       +....|.+..+.| .|.+.|..++.
T Consensus       207 k~vvd~~~hpqtlsV~~TRa~~~~---i~-v~~~-----~~~~~~~s~-------~~v~gvlvQYP~t-~G~i~d~~el~  269 (1001)
T KOG2040|consen  207 KFVVDSNCHPQTLSVVKTRAKGFG---IK-VVVS-----DIKEADYSS-------KDVSGVLVQYPDT-EGSVLDFDELV  269 (1001)
T ss_pred             eEEecCCCCcchhhhhhccccccc---ee-EEec-----CHHHhhccc-------cceeEEEEEcCCC-CCcccCHHHHH
Confidence            4788999999888777632  221   21 1111     333222211       2366788888888 89999999999


Q ss_pred             HHHHHcCCEEEEecccccccccccchhhhhcCCCCccEEEECCccccCCCCceEE-----EEEeccchhhhhccCCcccc
Q psy14299        120 TVCEKYDLWMHVDACWGGSLIFSEKYSFVLKGINRANSVSWNPHKMLGAPLQCSI-----LLIKEKGLLHQANATAATYL  194 (448)
Q Consensus       120 ~ia~~~g~~l~VD~A~~~~~~~~~~~~~~~~~~~~aD~~~~s~hK~l~~P~g~G~-----l~vr~~~~~~~~~~~~~~y~  194 (448)
                      +.+++.|..+++-.-.-+..+.-+.      +-=++|+.+.|++.+ |.|.|-|.     |.+++.  +..   ..|+-+
T Consensus       270 ~~a~~~~s~vv~atDLLaLtiLrpP------gefGaDIavGSsQRF-GVPlGYGGPHAaFfAv~~~--l~R---~mPGRi  337 (1001)
T KOG2040|consen  270 ELAHANGSLVVMATDLLALTILRPP------GEFGADIAVGSSQRF-GVPLGYGGPHAAFFAVSES--LVR---MMPGRI  337 (1001)
T ss_pred             HHhhccCceEEEeehhhHHHccCCh------hhcCceeeecccccc-CccccCCCchHHHHHHHHH--HHh---hCCCce
Confidence            9999999886653211111111111      111589999999884 55666553     333321  222   122222


Q ss_pred             cccCcccccccCCCCCcccCCCCchhHHHHHHHHHhChHHHHHHH---HHhhhhccCCCccchhhhhhhhhhhhhhhhhh
Q psy14299        195 FQQDKFYDVSFDTGDKSVQCGRKVDAFKLWLMWKARGNLGFRHFV---DNAVDCSRGSMTFSTLLCFDLQGLLHQANATA  271 (448)
Q Consensus       195 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~g~~~~i---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  271 (448)
                      -.-+                            -...|...++-++   ++++++-++.+++|+-     |-++  ||   
T Consensus       338 iGvt----------------------------kD~~gk~a~RLALQTREQHIrRDKATSNICTA-----QALL--AN---  379 (1001)
T KOG2040|consen  338 IGVT----------------------------KDALGKEAYRLALQTREQHIRRDKATSNICTA-----QALL--AN---  379 (1001)
T ss_pred             Eeee----------------------------ecccccHHHHHHHHHHHHHhhhhccchhhhHH-----HHHH--HH---
Confidence            1111                            0122334444333   5788888899999982     1111  11   


Q ss_pred             hhhhhccccccccccCCCCCccccccchhhHHHHHHHHHhcCccHHHHHHHHHHHHHHHHHHhhcCCCeEEeccCCceee
Q psy14299        272 ATYLFQQDKFYDVSFDTGDKSVQCGRKVDAFKLWLMWKARGNLGFRHFVDNAVDCSRYFLSQISQRPGFRLVIPEFQCTN  351 (448)
Q Consensus       272 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~~l~~~~~~~L~~~pg~~l~~~~~~~~~  351 (448)
                                                     ..+..-=|-|.+|++++.++.+.++.++...|+.. |-++. ..+.+-+
T Consensus       380 -------------------------------maAmyaiYHGp~gL~~IArrvh~~T~~l~~~l~~a-ghel~-~k~fFDT  426 (1001)
T KOG2040|consen  380 -------------------------------MAAMYAIYHGPHGLKEIARRVHNLTLILAEGLKNA-GHELQ-HKPFFDT  426 (1001)
T ss_pred             -------------------------------HHHHHhhhcCcHHHHHHHHHHHHHHHHHHHHHhhc-chhhc-cccccce
Confidence                                           11222236799999999999999999999999986 77777 6555555


Q ss_pred             EEEEeeccCCCccccchhhhhhhhhhhHHHHHHHHhCCcEEEEeeecCCcccccEEEEEecCCCCCCHHHHHHHHHHHH
Q psy14299        352 ICFWFIPVSLRDKVEDETWWSTLSKVAPRIKEKLVLGGTLMIGYQPLQHRNLHNFFRLVTTCHPASSRQDMDYAIDQIE  430 (448)
Q Consensus       352 v~f~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~L~~~g~~~~~~~~~~g~~~~~~lRis~~~~~~~t~edid~l~~al~  430 (448)
                      +-++...                  -..++.++-.++.+   .......    +.+-+++  -..++++|+|.|+..+.
T Consensus       427 LkI~~~~------------------s~~~~l~rA~~~~i---Nlr~~ed----~tigvsl--DETv~~~DvddLl~vf~  478 (1001)
T KOG2040|consen  427 LKIRCGC------------------SAEEVLDRAAKRQI---NLRLVED----GTIGVSL--DETVTEKDVDDLLWVFN  478 (1001)
T ss_pred             EEEEecC------------------cHHHHHHHHHhhcC---ceEEeec----CceEEee--cccccHHHHHHHHHHHc
Confidence            5554321                  11255666555552   1122222    4677888  57899999999999887

>PF06838 Met_gamma_lyase: Methionine gamma-lyase ; InterPro: IPR009651 This family represents the aluminium resistance protein, which confers resistance to aluminium in bacteria []

Probab=98.02  E-value=0.00011  Score=72.63  Aligned_cols=152  Identities=14%  Similarity=0.131  Sum_probs=91.5

Q ss_pred             CcHHHHHHHHHHHHHHhcCCcccccCCCCCCCeEEE-ecCCCchHHHHHHHHhCCC-------CCcEEEEecCCCCCcCH
Q psy14299          9 PGGSISNMYSICLARYRLDPDTKRKGLSHLPPLCMF-TSEDSHYSMLKAAHWLGIG-------MDNVIRVKTNERGQMIC   80 (448)
Q Consensus         9 ~ggT~an~~al~~a~~~~~~~~~~~G~~~~~~~~Vl-~~~~~H~s~~~~~~~~g~~-------~~~v~~v~~~~~g~id~   80 (448)
                      .+||.|+-.++....+              |++.++ +.-.-+-.+.+..-+.|-+       ...+..++..++|.+|.
T Consensus        79 vSGTHAi~~~Lfg~Lr--------------pGD~ll~~tG~PYDTL~~VIG~~g~~~GSL~e~Gi~Y~~v~L~~dg~~D~  144 (403)
T PF06838_consen   79 VSGTHAIALALFGVLR--------------PGDELLSITGKPYDTLEEVIGIRGNGPGSLKEFGIKYREVPLTEDGTIDW  144 (403)
T ss_dssp             -SHHHHHHHHHHHH----------------TT-EEEESSSS--CCHHHHHTSSSSSSSSTGGGT-EEEE--B-TTSSB-H
T ss_pred             cchHHHHHHHHHhcCC--------------CCCeEEEcCCCchhhHHHHhCCCCCCCCChHHhCceeEEEeecCCCCcCH
Confidence            4799999999877666              445444 3434444455544322210       12689999999999999


Q ss_pred             HHHHHHHHHhhhcCCCcEEEEEeccCCc----cccccCHHHHHHHHHHc--CCEEEEecccccccccccchhhhhcCCCC
Q psy14299         81 SFLEQTIQTSLAEKKIPLFVNATAGTTV----LGAFDPLDEIATVCEKY--DLWMHVDACWGGSLIFSEKYSFVLKGINR  154 (448)
Q Consensus        81 e~Le~~l~~~~~~~~~~~lVv~~~~~t~----tG~~~~l~~I~~ia~~~--g~~l~VD~A~~~~~~~~~~~~~~~~~~~~  154 (448)
                      +.+++++++      ++++|.+.-..-.    +=.+++|+++++++|+.  +++++||-+||-..-..+.-.     + +
T Consensus       145 ~~i~~~~~~------~tk~v~IQRSrGYs~R~sl~i~~I~~~i~~vk~~~p~~iifVDNCYGEFvE~~EP~~-----v-G  212 (403)
T PF06838_consen  145 EAIKKALKP------NTKMVLIQRSRGYSWRPSLTIEEIKEIIKFVKEINPDVIIFVDNCYGEFVETQEPTE-----V-G  212 (403)
T ss_dssp             HHHHHHHHT------TEEEEEEE-S-TTSSS----HHHHHHHHHHHHHH-TTSEEEEE-TTTTTTSSS-GGG-----G-T
T ss_pred             HHHHHhhcc------CceEEEEecCCCCCCCCCCCHHHHHHHHHHHHhhCCCeEEEEeCCcceeccccCccc-----c-c
Confidence            999999985      5778877542221    22567888888888876  789999999996654322111     1 5


Q ss_pred             ccEEEECCccccCC-CCceEEEEEeccchhhhh
Q psy14299        155 ANSVSWNPHKMLGA-PLQCSILLIKEKGLLHQA  186 (448)
Q Consensus       155 aD~~~~s~hK~l~~-P~g~G~l~vr~~~~~~~~  186 (448)
                      ||.++.|.-|+.|+ -..+|..++.++++.+..
T Consensus       213 ADl~aGSLIKNpGGgiAptGGYIaGr~~lVe~~  245 (403)
T PF06838_consen  213 ADLMAGSLIKNPGGGIAPTGGYIAGRKDLVERA  245 (403)
T ss_dssp             -SEEEEETTSGGGTTT-SS-EEEEESHHHHHHH
T ss_pred             hhheeccceeCCCCCccCcCCEEechHHHHHHH
Confidence            89999999998654 355667667777665543

; PDB: 3JZL_A 3I16_C 3GWP_A 3FD0_B 3HT4_F.

>PF03841 SelA: L-seryl-tRNA selenium transferase; InterPro: IPR018319 In prokaryotes, the incorporation of selenocysteine as the 21st amino acid, encoded by TGA, requires several elements: SelC is the tRNA itself, SelD acts as a donor of reduced selenium, SelA modifies a serine residue on SelC into selenocysteine, and SelB is a selenocysteine-specific translation elongation factor

Probab=97.87  E-value=1.3e-05  Score=79.58  Aligned_cols=132  Identities=19%  Similarity=0.153  Sum_probs=39.7

Q ss_pred             EEEecCCCchH------HHHHHHHhCCCCCcEEEEecCCCCCcCHHHHHHHHHHhhhcCCCcEEEEEeccCCc--ccc--
Q psy14299         42 CMFTSEDSHYS------MLKAAHWLGIGMDNVIRVKTNERGQMICSFLEQTIQTSLAEKKIPLFVNATAGTTV--LGA--  111 (448)
Q Consensus        42 ~Vl~~~~~H~s------~~~~~~~~g~~~~~v~~v~~~~~g~id~e~Le~~l~~~~~~~~~~~lVv~~~~~t~--tG~--  111 (448)
                      .|++++-+-..      +.+..+..|.   +++.|-.  ..+..+++.+++|.+      ++.++.-+|.+|.  .|.  
T Consensus        87 EvIvsRGelVeiGgsFRip~vm~~sGa---~lvEVGt--tN~t~~~Dye~AI~e------~Ta~ll~Vh~Sn~~i~GFt~  155 (367)
T PF03841_consen   87 EVIVSRGELVEIGGSFRIPDVMRQSGA---RLVEVGT--TNRTHLSDYEKAITE------NTAALLKVHTSNFRIQGFTG  155 (367)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             ccccccccccccccccccccccccccc---ccccccc--ccccccccccccccc------cccccccccccccccccccc
Confidence            35556544432      3344555555   5555553  234567889999976      4777878886665  342  


Q ss_pred             ccCHHHHHHHHHHcCCEEEEecccccccc----cccchhhhhcCC-CCccEEEECCccccCCCCceEEEEEeccchhhhh
Q psy14299        112 FDPLDEIATVCEKYDLWMHVDACWGGSLI----FSEKYSFVLKGI-NRANSVSWNPHKMLGAPLQCSILLIKEKGLLHQA  186 (448)
Q Consensus       112 ~~~l~~I~~ia~~~g~~l~VD~A~~~~~~----~~~~~~~~~~~~-~~aD~~~~s~hK~l~~P~g~G~l~vr~~~~~~~~  186 (448)
                      --+++++.+++|+|++++++|.+.|...-    ..+..+..-..+ .++|.+++|+.|.|++|- +|+++-|+ +++...
T Consensus       156 ~~~~~el~~la~~~~lp~i~DlgsG~l~dl~~~gl~~Ep~v~~~~~~GaDlV~fSGdKlLGGPQ-aGiI~Gkk-~lI~~l  233 (367)
T PF03841_consen  156 EVSLEELAELAKEHGLPVIVDLGSGLLVDLSPYGLPDEPTVQEYLAAGADLVTFSGDKLLGGPQ-AGIIVGKK-ELIEKL  233 (367)
T ss_dssp             -----HHHHHHHHHT--EEEE-TTHHHHHHHTT----------CCCCT-SEEEEETTSSSSS-S--EEEEEEH-HHHHHH
T ss_pred             cccHHHHHHHHhhcCCcEEEECCCCCCcCcccccCccccHHHHHhhcCCCEEEEECCCcCCCCC-eEEEEeCH-HHHHHH
Confidence            35799999999999999999987654321    111111111112 369999999999999987 68876655 455543

3-prime or 5-prime non-coding elements of mRNA have been found as probable structures for directing selenocysteine incorporation. This family describes SelA. A close homologue of SelA is found in Helicobacter pylori, but all other required elements are missing and the protein is shorter at the N terminus than SelA from other species. The trusted cut-off is set above the score generated for Helicobacter pylori putative SelA.; PDB: 2AEV_A 2AEU_A.

>KOG2790|consensus

Probab=97.78  E-value=0.00093  Score=63.64  Aligned_cols=262  Identities=14%  Similarity=0.029  Sum_probs=157.1

Q ss_pred             CCeEEEecCCCchHHHHHHHHhCCCCCcEEEEecCC--CC-CcCHHHHHHHHHHhhhcCCCcEEEEEeccCCccccccC-
Q psy14299         39 PPLCMFTSEDSHYSMLKAAHWLGIGMDNVIRVKTNE--RG-QMICSFLEQTIQTSLAEKKIPLFVNATAGTTVLGAFDP-  114 (448)
Q Consensus        39 ~~~~Vl~~~~~H~s~~~~~~~~g~~~~~v~~v~~~~--~g-~id~e~Le~~l~~~~~~~~~~~lVv~~~~~t~tG~~~~-  114 (448)
                      +-+.|+++.-+-.+..++-++.-.   +.+..+..+  -| ..|++.++...        .-..|..+..+|..|+-.| 
T Consensus        99 ~AdYiVTGsWS~KA~~EAkk~~~~---~~V~~~~k~y~ygkvPd~~~w~~~~--------da~yvyyCaNETVHGVEf~~  167 (370)
T KOG2790|consen   99 CADYVVTGSWSAKAAEEAKKYGTP---NIVIPKLKSYTYGKVPDPSTWELNP--------DASYVYYCANETVHGVEFDF  167 (370)
T ss_pred             ccceEEeccccHHHHHHHHhhCCc---eEEeccccccccCcCCChhhcccCC--------CccEEEEecCceeeceecCC
Confidence            455688887777777777665433   222222221  12 34655554322        2348999999999997533 


Q ss_pred             HHHHHHHHHHcCCEEEEecccccccccccchhhhhcCCCCccEEEECCccccCCCCceEEEEEeccchhhhhccCCcccc
Q psy14299        115 LDEIATVCEKYDLWMHVDACWGGSLIFSEKYSFVLKGINRANSVSWNPHKMLGAPLQCSILLIKEKGLLHQANATAATYL  194 (448)
Q Consensus       115 l~~I~~ia~~~g~~l~VD~A~~~~~~~~~~~~~~~~~~~~aD~~~~s~hK~l~~P~g~G~l~vr~~~~~~~~~~~~~~y~  194 (448)
                      +.    +-.-+|..++.|-+.-.-.-++|..        .-+.+....+|..+ |.|.-++++|++ ++.......|..+
T Consensus       168 ~P----~~~~~~~vlVaDmSSnflSrpvDvs--------k~gvi~aGAQKN~G-~aG~Tvvivr~d-llg~~~~~tP~v~  233 (370)
T KOG2790|consen  168 IP----VNDPKGAVLVADMSSNFLSRPVDVS--------KFGVIFAGAQKNVG-PAGVTVVIVRKD-LLGNALDITPSVL  233 (370)
T ss_pred             CC----CCCCCCceEEEecccchhcCCccch--------hcceEEeccccccC-ccccEEEEEehh-hhcccccCCcccc
Confidence            33    3344688999997655444444432        23688889999987 888888889775 4555444333332


Q ss_pred             cccCcccccccCCCCCcccCCCCchhHHHHHHHHHhChHHHHHHHHHhhhhccCCCccchhhhhhhhhhhhhhhhhhhhh
Q psy14299        195 FQQDKFYDVSFDTGDKSVQCGRKVDAFKLWLMWKARGNLGFRHFVDNAVDCSRGSMTFSTLLCFDLQGLLHQANATAATY  274 (448)
Q Consensus       195 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~g~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  274 (448)
                      .-...       ....++-.+.+                                                         
T Consensus       234 dyk~~-------~~NnSlyNTpP---------------------------------------------------------  249 (370)
T KOG2790|consen  234 DYKIM-------DKNNSLYNTPP---------------------------------------------------------  249 (370)
T ss_pred             ceeee-------ccccccccCCC---------------------------------------------------------
Confidence            21110       00001111111                                                         


Q ss_pred             hhccccccccccCCCCCccccccchhhHHHHHHHHHh-cCccHHHHHHHHHHHHHHHHHHhhcCCCeEEeccCCc---ee
Q psy14299        275 LFQQDKFYDVSFDTGDKSVQCGRKVDAFKLWLMWKAR-GNLGFRHFVDNAVDCSRYFLSQISQRPGFRLVIPEFQ---CT  350 (448)
Q Consensus       275 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~G~~~~~~~~~~l~~~~~~~L~~~pg~~l~~~~~~---~~  350 (448)
                                             ...+....+.++|+ .+-|+..+.+...+.++.+++.|.+..||-....+|.   .-
T Consensus       250 -----------------------~f~iy~~~Lv~~~il~~GGl~a~e~~n~~KskllYd~iD~s~gfy~cpVe~~~RS~M  306 (370)
T KOG2790|consen  250 -----------------------CFGIYVMGLVFEWILEKGGLAAMEKLNQEKSKLLYDAIDNSNGFYRCPVEPSVRSRM  306 (370)
T ss_pred             -----------------------eeeeeehhhHHHHHHhcccHHHHHHHHHHHHHHHHHHHHhcCCeEEcccchhhhhhc
Confidence                                   11122233445544 5667999999999999999999999889865422332   36


Q ss_pred             eEEEEeeccCCCccccchhhhhhhhhhhHHHHHHHHhCCcEEEEeeecCCcccccEEEEEecCCCCCCHHHHHHHHHHHH
Q psy14299        351 NICFWFIPVSLRDKVEDETWWSTLSKVAPRIKEKLVLGGTLMIGYQPLQHRNLHNFFRLVTTCHPASSRQDMDYAIDQIE  430 (448)
Q Consensus       351 ~v~f~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~L~~~g~~~~~~~~~~g~~~~~~lRis~~~~~~~t~edid~l~~al~  430 (448)
                      +++|+..+..+                ..++.+.-.+++.  +..-.++.-   +.+|.|+  .-..+-+++++|++-++
T Consensus       307 NV~Fri~~d~L----------------e~eFLkeA~~~~m--v~LKGhRSV---GGiRASl--YNAisv~~~q~L~~~m~  363 (370)
T KOG2790|consen  307 NVPFRIEKDEL----------------EAEFLKEAAKEHM--VQLKGHRSV---GGIRASL--YNAISVEEVQKLAAFMK  363 (370)
T ss_pred             ccceeecchHH----------------HHHHHHHHHHhhh--hcccccccc---ccchhhh--hccccHHHHHHHHHHHH
Confidence            68888753222                2356666555552  222223333   6799999  44678899999999999


Q ss_pred             HHHHH
Q psy14299        431 LRGAE  435 (448)
Q Consensus       431 ~~~~~  435 (448)
                      +..+.
T Consensus       364 ~F~k~  368 (370)
T KOG2790|consen  364 EFQKK  368 (370)
T ss_pred             HHHHh
Confidence            88764

>KOG1403|consensus

Probab=97.61  E-value=0.0064  Score=58.49  Aligned_cols=123  Identities=17%  Similarity=0.097  Sum_probs=76.1

Q ss_pred             cEEEeCcHHHHHHHHHHHHHHhcCCcccccCCCCCCCeEEEecCCCchHHHHHHHHh--------CCC-CCcEEEEecCC
Q psy14299          4 KPFLLPGGSISNMYSICLARYRLDPDTKRKGLSHLPPLCMFTSEDSHYSMLKAAHWL--------GIG-MDNVIRVKTNE   74 (448)
Q Consensus         4 ~g~~t~ggT~an~~al~~a~~~~~~~~~~~G~~~~~~~~Vl~~~~~H~s~~~~~~~~--------g~~-~~~v~~v~~~~   74 (448)
                      ..+|+++|+|||-+|+..||+..           ...++|.++...|--+....+..        +.. ++-++.-|+++
T Consensus       104 vc~F~NSGSEANDLALRLAR~ft-----------khqDvItldHAYHGHl~s~mE~SPYKF~~g~~v~kpd~VHVAPcPD  172 (452)
T KOG1403|consen  104 VCFFVNSGSEANDLALRLARNFT-----------KHQDVITLDHAYHGHLQSVMEVSPYKFNQGGGVAKPDYVHVAPCPD  172 (452)
T ss_pred             EEEEecCCchhhHHHHHHHHhhc-----------ccCceEEEechhccceeeeeeccceeccCCCCcCCCceeEecCCcc
Confidence            36899999999999999999863           25567777777665433222221        111 22233334331


Q ss_pred             ---------------CCCcCHHHHHHHHHHhhhcCCCcEEEEEeccCCccccccC----HHHHHHHHHHcCCEEEEeccc
Q psy14299         75 ---------------RGQMICSFLEQTIQTSLAEKKIPLFVNATAGTTVLGAFDP----LDEIATVCEKYDLWMHVDACW  135 (448)
Q Consensus        75 ---------------~g~id~e~Le~~l~~~~~~~~~~~lVv~~~~~t~tG~~~~----l~~I~~ia~~~g~~l~VD~A~  135 (448)
                                     .+..-.+.+++.+++....+......+..+-.+--|.+-|    ++++++..|.+|-..+.|..+
T Consensus       173 vyrGK~r~~~~~~a~~~~~Yad~vk~I~~d~~~~g~gvAAfiAEslQSCGGQiiPPagYFq~Va~~Vr~aGGv~IaDEVQ  252 (452)
T KOG1403|consen  173 VYRGKFRDKMYPDADMGALYADPVKEICQDQLAKGQGVAAFIAESLQSCGGQIIPPAGYFQAVADAVRSAGGVCIADEVQ  252 (452)
T ss_pred             ccccccccccCCcccchhhhhhHHHHHHHHHHhcCCcHHHHHHHHHHhcCCcccCchhHHHHHHHHHhcCCCeEEeehhh
Confidence                           1123346677777765544433333344444444565544    688999999999999999986


Q ss_pred             cc
Q psy14299        136 GG  137 (448)
Q Consensus       136 ~~  137 (448)
                      .+
T Consensus       253 vG  254 (452)
T KOG1403|consen  253 VG  254 (452)
T ss_pred             hc
Confidence            55

>KOG1412|consensus

Probab=97.56  E-value=0.025  Score=54.86  Aligned_cols=159  Identities=10%  Similarity=0.049  Sum_probs=97.6

Q ss_pred             cEEEeCcHHHHHHHHHHHHHHhcCCcccccCCCCCCCeEEEecCCCchHHHHHHHHhCCCCCcEEEEec--CCCCCcCHH
Q psy14299          4 KPFLLPGGSISNMYSICLARYRLDPDTKRKGLSHLPPLCMFTSEDSHYSMLKAAHWLGIGMDNVIRVKT--NERGQMICS   81 (448)
Q Consensus         4 ~g~~t~ggT~an~~al~~a~~~~~~~~~~~G~~~~~~~~Vl~~~~~H~s~~~~~~~~g~~~~~v~~v~~--~~~g~id~e   81 (448)
                      .|+=+-+||-|+.++..-.-..+            ++..||+|.....+-...+.-.|.-  .+...+.  .+.-.+|.+
T Consensus       101 ~~vQslsGTGAl~~~A~Fl~~~~------------~~~~VY~SnPTW~nH~~if~~aGf~--tv~~Y~yWd~~~k~~d~e  166 (410)
T KOG1412|consen  101 FGVQSLSGTGALRIAADFLATFY------------NKNTVYVSNPTWENHHAIFEKAGFT--TVATYPYWDAENKCVDLE  166 (410)
T ss_pred             cceeeccccchhhhhHHHHHHhc------------ccceeEecCCchhHHHHHHHHcCCc--eeeeeeeecCCCceecHH
Confidence            45667788888777654443332            4456999998887777777777752  3444443  234578999


Q ss_pred             HHHHHHHHhhhcCCCcEEEEEeccCCcccc---ccCHHHHHHHHHHcCCEEEEecccccccc---cccchhhhh---cCC
Q psy14299         82 FLEQTIQTSLAEKKIPLFVNATAGTTVLGA---FDPLDEIATVCEKYDLWMHVDACWGGSLI---FSEKYSFVL---KGI  152 (448)
Q Consensus        82 ~Le~~l~~~~~~~~~~~lVv~~~~~t~tG~---~~~l~~I~~ia~~~g~~l~VD~A~~~~~~---~~~~~~~~~---~~~  152 (448)
                      .+...|+..   +.....+.-....|+||.   .....+|+++.++++...+.|-|+-+.+-   ..|.|..+.   .+.
T Consensus       167 ~~Lsdl~~A---Pe~si~iLhaCAhNPTGmDPT~EQW~qia~vik~k~lf~fFDiAYQGfASGD~~~DawAiR~fV~~g~  243 (410)
T KOG1412|consen  167 GFLSDLESA---PEGSIIILHACAHNPTGMDPTREQWKQIADVIKSKNLFPFFDIAYQGFASGDLDADAWAIRYFVEQGF  243 (410)
T ss_pred             HHHHHHhhC---CCCcEEeeeccccCCCCCCCCHHHHHHHHHHHHhcCceeeeehhhcccccCCccccHHHHHHHHhcCC
Confidence            998888763   112222333334788883   34478899999999999999998765443   233332221   121


Q ss_pred             CCccEEEECCccccCC--C-CceEEEEEeccc
Q psy14299        153 NRANSVSWNPHKMLGA--P-LQCSILLIKEKG  181 (448)
Q Consensus       153 ~~aD~~~~s~hK~l~~--P-~g~G~l~vr~~~  181 (448)
                      +  =+++-|+.|.+|-  + .|+=-++++++.
T Consensus       244 e--~fv~QSFaKNfGlYneRvGnltvv~~n~a  273 (410)
T KOG1412|consen  244 E--LFVCQSFAKNFGLYNERVGNLTVVVNNPA  273 (410)
T ss_pred             e--EEEEhhhhhhcccccccccceEEEecChh
Confidence            1  2667789997653  3 333334455543

>KOG1405|consensus

Probab=97.50  E-value=0.0023  Score=62.79  Aligned_cols=83  Identities=13%  Similarity=0.069  Sum_probs=55.5

Q ss_pred             CHHHHHHHHHHhhhcCCCcEEEEEeccCCccc----cccCHHHHHHHHHHcCCEEEEecccccccccccchhhhhcCCC-
Q psy14299         79 ICSFLEQTIQTSLAEKKIPLFVNATAGTTVLG----AFDPLDEIATVCEKYDLWMHVDACWGGSLIFSEKYSFVLKGIN-  153 (448)
Q Consensus        79 d~e~Le~~l~~~~~~~~~~~lVv~~~~~t~tG----~~~~l~~I~~ia~~~g~~l~VD~A~~~~~~~~~~~~~~~~~~~-  153 (448)
                      .++++|+.|.+..+....+..+++.-..+.-|    .-+-+..+.+++++||+.++||..|.++-....-|.+.-.+++ 
T Consensus       254 Cl~~Ve~li~~~~~k~~pVaaiIvEPIQsEGGDnhaSp~Ff~kLrdi~~Kh~v~fivDEVQTGgGaTGk~WaHehw~l~~  333 (484)
T KOG1405|consen  254 CLAEVEDLIVKYRKKKKPVAAIIVEPIQSEGGDNHASPDFFRKLRDITKKHGVAFIVDEVQTGGGATGKFWAHEHWNLDS  333 (484)
T ss_pred             HHHHHHHHHHHHhhcCCCeEEEEeechhccCCCccCCHHHHHHHHHHHHhcCeEEEeeeeecCCCccCceeeehhcCCCC
Confidence            56788888887655544455566655555544    4456899999999999999999998876544333332222222 


Q ss_pred             CccEEEEC
Q psy14299        154 RANSVSWN  161 (448)
Q Consensus       154 ~aD~~~~s  161 (448)
                      ..|.+++|
T Consensus       334 PpD~vTFS  341 (484)
T KOG1405|consen  334 PPDVVTFS  341 (484)
T ss_pred             Cccceehh
Confidence            47887774

>KOG0629|consensus

Probab=96.77  E-value=0.0011  Score=66.46  Aligned_cols=59  Identities=64%  Similarity=1.191  Sum_probs=55.2

Q ss_pred             CCcccccccCcccccccCCCCCcccCCCCchhHHHHHHHHHhChHHHHHHHHHhhhhcc
Q psy14299        189 TAATYLFQQDKFYDVSFDTGDKSVQCGRKVDAFKLWLMWKARGNLGFRHFVDNAVDCSR  247 (448)
Q Consensus       189 ~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~g~~~~i~~~~~~~~  247 (448)
                      ..+.|++++++.++.++|.+++.++++|+...+++|.+|++-|..|+++.+++.+++|+
T Consensus       346 ~~A~YLFq~dK~YdvS~DTgdK~iQCGRh~D~FKlWlmwkaKG~~Gfe~~v~k~~~lA~  404 (510)
T KOG0629|consen  346 MSAIYLFQQDKFYDVSYDTGDKAIQCGRHVDVFKLWLMWKAKGTQGFEAQVDKCLRLAE  404 (510)
T ss_pred             cchhhhhccCceeecccccccchhhcCccccHHHHHHHHHhcccccHHHHHHHHHHHHH
Confidence            45789999999999999999999999999999999999999999999999999998743

>COG4100 Cystathionine beta-lyase family protein involved in aluminum resistance [Inorganic ion transport and metabolism]

Probab=96.50  E-value=0.014  Score=56.22  Aligned_cols=151  Identities=12%  Similarity=0.111  Sum_probs=94.1

Q ss_pred             CcHHHHHHHHHHHHHHhcCCcccccCCCCCCCeE-EEecCCCchHHHHHHHHhCCC-------CCcEEEEecCCCCCcCH
Q psy14299          9 PGGSISNMYSICLARYRLDPDTKRKGLSHLPPLC-MFTSEDSHYSMLKAAHWLGIG-------MDNVIRVKTNERGQMIC   80 (448)
Q Consensus         9 ~ggT~an~~al~~a~~~~~~~~~~~G~~~~~~~~-Vl~~~~~H~s~~~~~~~~g~~-------~~~v~~v~~~~~g~id~   80 (448)
                      -+||.|+-.|+....+              |++. +++.-.-+-.+.+..-+-|-+       ......+|...+|.+|.
T Consensus        90 isGTHAI~~aLfg~LR--------------pgDell~i~G~PYDTLeevIG~rg~~~gSL~dfgi~Y~~v~Lt~~gkiD~  155 (416)
T COG4100          90 ISGTHAIACALFGILR--------------PGDELLYITGSPYDTLEEVIGLRGEGQGSLKDFGIKYKAVPLTADGKIDI  155 (416)
T ss_pred             ecchhHHHHHHHhccC--------------CCCeEEEecCCcchhHHHHhccCCCCcccHHHhCcceeecccccCCcccH
Confidence            3678888777765444              3333 343333333444433222210       12688899999999999


Q ss_pred             HHHHHHHHHhhhcCCCcEEEEEeccC----CccccccCHHHHHHHHHHc--CCEEEEecccccccccccchhhhhcCCCC
Q psy14299         81 SFLEQTIQTSLAEKKIPLFVNATAGT----TVLGAFDPLDEIATVCEKY--DLWMHVDACWGGSLIFSEKYSFVLKGINR  154 (448)
Q Consensus        81 e~Le~~l~~~~~~~~~~~lVv~~~~~----t~tG~~~~l~~I~~ia~~~--g~~l~VD~A~~~~~~~~~~~~~~~~~~~~  154 (448)
                      +.++..+.+      ++++|.+.-..    -++=.+.+|+++.++.|+-  ++.++||-++|-..-..+.  .   .+ +
T Consensus       156 ~~v~~~i~~------~tkli~IQRS~GY~~RpS~~I~eI~~~i~~vk~inpn~ivFVDNCYGEFvE~~EP--t---~v-G  223 (416)
T COG4100         156 QAVKTAISD------RTKLIGIQRSKGYAWRPSLSIAEIEEMITFVKEINPNVIVFVDNCYGEFVEEKEP--T---HV-G  223 (416)
T ss_pred             HHHHHhcCc------cceEEEEEeccCcCCCCcccHHHHHHHHHHHHhcCCCEEEEEeccchhhhhccCc--c---cc-c
Confidence            999999975      57777765422    2233668888888888885  6899999999865432221  0   11 5


Q ss_pred             ccEEEECCccccCCC-CceEEEEEeccchhhh
Q psy14299        155 ANSVSWNPHKMLGAP-LQCSILLIKEKGLLHQ  185 (448)
Q Consensus       155 aD~~~~s~hK~l~~P-~g~G~l~vr~~~~~~~  185 (448)
                      +|.+..|.-|.-++- .-+|..+..+.++...
T Consensus       224 aDliAGSLIKNpGGgiaktGGYiaGk~~~ve~  255 (416)
T COG4100         224 ADLIAGSLIKNPGGGIAKTGGYIAGKAELVEA  255 (416)
T ss_pred             hhhhccceeeCCCCceeeccceeechHHHHHh
Confidence            899999999975542 2334444444455443

>KOG1411|consensus

Probab=93.57  E-value=1.1  Score=44.42  Aligned_cols=124  Identities=8%  Similarity=0.051  Sum_probs=74.8

Q ss_pred             CCeEEEecCCCchHHHHHHHHhCCCCCcEEEEecCCCCCcCHHHHHHHHHHhhhcCCCcEEEEEeccCCccc---cccCH
Q psy14299         39 PPLCMFTSEDSHYSMLKAAHWLGIGMDNVIRVKTNERGQMICSFLEQTIQTSLAEKKIPLFVNATAGTTVLG---AFDPL  115 (448)
Q Consensus        39 ~~~~Vl~~~~~H~s~~~~~~~~g~~~~~v~~v~~~~~g~id~e~Le~~l~~~~~~~~~~~lVv~~~~~t~tG---~~~~l  115 (448)
                      +...|+++..+...-.+.-...|+....+++.. .....+|.+.+.+.+.+.   .....++.=....|+||   .....
T Consensus       145 ~~~~I~ip~PTWgNh~~if~~ag~~~~~yrYyd-~~t~gld~~g~ledl~~~---p~gs~ilLhaCaHNPTGvDPt~eqw  220 (427)
T KOG1411|consen  145 PSRDIYIPDPTWGNHKNIFKDAGLPVKFYRYYD-PKTRGLDFKGMLEDLGEA---PEGSIILLHACAHNPTGVDPTKEQW  220 (427)
T ss_pred             cccceeecCCcccccCccccccCcceeeeeecc-ccccccchHHHHHHHhcC---CCCcEEEeehhhcCCCCCCccHHHH
Confidence            455688888776555555556666322222222 345678888877777653   22233444455778888   34668


Q ss_pred             HHHHHHHHHcCCEEEEecccccccc---cccchhhh---hcCCCCccEEEECCccccCC
Q psy14299        116 DEIATVCEKYDLWMHVDACWGGSLI---FSEKYSFV---LKGINRANSVSWNPHKMLGA  168 (448)
Q Consensus       116 ~~I~~ia~~~g~~l~VD~A~~~~~~---~~~~~~~~---~~~~~~aD~~~~s~hK~l~~  168 (448)
                      ++|.++.++.+..-++|.|+-+.+.   .-|.+..+   -+|.  -=.++.|..|.+|-
T Consensus       221 ~ki~~~~~~k~~~pffDmAYQGfaSG~~d~DA~avR~F~~~g~--~~~laQSyAKNMGL  277 (427)
T KOG1411|consen  221 EKISDLIKEKNLLPFFDMAYQGFASGDLDKDAQAVRLFVEDGH--EILLAQSYAKNMGL  277 (427)
T ss_pred             HHHHHHhhhccccchhhhhhcccccCCchhhHHHHHHHHHcCC--ceEeehhhhhhcch
Confidence            8899999999999999998776543   11221111   1121  12566788897653

>PF04864 Alliinase_C: Allinase; InterPro: IPR006948 Allicin is a thiosulphinate that gives rise to dithiines, allyl sulphides and ajoenes, the three groups of active compounds in Allium species

Probab=88.64  E-value=28  Score=34.85  Aligned_cols=148  Identities=8%  Similarity=0.009  Sum_probs=72.9

Q ss_pred             cEEEeCcHHHHHHHHHHHHHHhcCCcccccCCCCCCCeEEEecCCCchHHHHHHHHhCCCCCcEEEEecCCCCCcCHHHH
Q psy14299          4 KPFLLPGGSISNMYSICLARYRLDPDTKRKGLSHLPPLCMFTSEDSHYSMLKAAHWLGIGMDNVIRVKTNERGQMICSFL   83 (448)
Q Consensus         4 ~g~~t~ggT~an~~al~~a~~~~~~~~~~~G~~~~~~~~Vl~~~~~H~s~~~~~~~~g~~~~~v~~v~~~~~g~id~e~L   83 (448)
                      ..+|.+|+|...+.++.++-....    ..    .+...|+.....++++.....++.-   ....+.-|..      ..
T Consensus        68 ~IV~GtGsTQL~~AalyALSp~~~----~~----~~p~~VVa~aPYY~~Y~~qt~~f~s---~~y~w~Gda~------~~  130 (363)
T PF04864_consen   68 YIVFGTGSTQLFNAALYALSPNAS----PS----SSPASVVAAAPYYSSYPEQTDFFDS---RLYKWAGDAS------NF  130 (363)
T ss_dssp             EEEEECHHHHHHHHHHHHHCHHT-----TT----SSSEEEEE-SS--CHHHHHCCCT-B---TTEEEEEECC------CG
T ss_pred             EEEEcCCHHHHHHHHHHhcCCCCC----CC----CCCceeEecCCCccchHHHHHhccc---cCccccccHH------hh
Confidence            357888888887666665432200    00    1344566554444444444444432   1223332211      11


Q ss_pred             HHHHHHhhhcCCCcEEEEEeccCCccccccCHHHHHHHHHHcCCEEEEecccccccc-cccchhhhhcCCCCccEEEECC
Q psy14299         84 EQTIQTSLAEKKIPLFVNATAGTTVLGAFDPLDEIATVCEKYDLWMHVDACWGGSLI-FSEKYSFVLKGINRANSVSWNP  162 (448)
Q Consensus        84 e~~l~~~~~~~~~~~lVv~~~~~t~tG~~~~l~~I~~ia~~~g~~l~VD~A~~~~~~-~~~~~~~~~~~~~~aD~~~~s~  162 (448)
                      .   .+   .+..+.+=+++.|+|+.|.+..     .+++.-+..++-|-||.+.++ +++. +      ..=|++.++.
T Consensus       131 ~---~~---~~~~~~IElVTSPNNPDG~lr~-----~V~~g~~~k~I~D~AYYWPhyTpI~~-~------aD~DiMLFT~  192 (363)
T PF04864_consen  131 K---NS---DNPSPYIELVTSPNNPDGQLRE-----AVLNGSSGKVIHDLAYYWPHYTPITA-P------ADHDIMLFTL  192 (363)
T ss_dssp             T---T----S-CCGEEEEEESS-TTT-----------SSTTTEEEEEEE-TT-STTTS---S--------B--SEEEEEH
T ss_pred             c---cC---CCCCCeEEEEeCCCCCcccccc-----hhcCCCCcceeeeeeeecccccccCC-C------CCCceEEEEE
Confidence            1   11   1235778899999999997632     123556677899999998766 2221 1      1238999999


Q ss_pred             ccc-cCCCCceEEEEEeccchhhhh
Q psy14299        163 HKM-LGAPLQCSILLIKEKGLLHQA  186 (448)
Q Consensus       163 hK~-l~~P~g~G~l~vr~~~~~~~~  186 (448)
                      .|. +.+-.-.|..++++++.-.++
T Consensus       193 SK~TGHAGSR~GWAlVKD~~Va~kM  217 (363)
T PF04864_consen  193 SKLTGHAGSRFGWALVKDEEVAKKM  217 (363)
T ss_dssp             HHHCS-GGG-EEEEEES-HHHHHHH
T ss_pred             ecccCccccccceeeecCHHHHHHH
Confidence            994 444445677889988665443

Allicin is synthesised from sulphoxide cysteine derivatives by alliinase, whose C-S lyase activity cleaves C(beta)-S(gamma) bonds. It is thought that this enzyme forms part of a primitive plant defence system [].; GO: 0016846 carbon-sulfur lyase activity; PDB: 1LK9_B 2HOX_C 2HOR_A 3BWO_D 3BWN_B.

>PF00282 Pyridoxal_deC: Pyridoxal-dependent decarboxylase conserved domain; InterPro: IPR002129 Pyridoxal phosphate is the active form of vitamin B6 (pyridoxine or pyridoxal)

Probab=81.80  E-value=0.73  Score=46.96  Aligned_cols=59  Identities=36%  Similarity=0.529  Sum_probs=45.1

Q ss_pred             hhhhhhhhhhhhhhhccccccccccCCCCCccccccchhhHHHHHHHHHhcCccHHHHH
Q psy14299        262 GLLHQANATAATYLFQQDKFYDVSFDTGDKSVQCGRKVDAFKLWLMWKARGNLGFRHFV  320 (448)
Q Consensus       262 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~  320 (448)
                      ..+..+....+.|++.+.+-++...+..++.++|.|...++++|..|+..|.+|+++++
T Consensus       279 ~~l~~~~~~~~~Yl~~~~~~~~~~~~~~~~tl~~SR~~~alk~w~~l~~~G~~G~~~~i  337 (373)
T PF00282_consen  279 SDLRDAFSINADYLGNDDRESDESYDYGDYTLQGSRRFRALKLWATLKSLGREGYRERI  337 (373)
T ss_dssp             GGHHGGGEEEETCTT-S-SSS-GGGCEEEGSSSSSGHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             cchHHHhccChhhhcccccccccccccccccccccccchHHHHHHHHHhcCHHHHHHHH
Confidence            34445555567888877766777788889999999999999999999999999876643

Pyridoxal 5'-phosphate (PLP) is a versatile catalyst, acting as a coenzyme in a multitude of reactions, including decarboxylation, deamination and transamination [, , ]. PLP-dependent enzymes are primarily involved in the biosynthesis of amino acids and amino acid-derived metabolites, but they are also found in the biosynthetic pathways of amino sugars and in the synthesis or catabolism of neurotransmitters; pyridoxal phosphate can also inhibit DNA polymerases and several steroid receptors []. Inadequate levels of pyridoxal phosphate in the brain can cause neurological dysfunction, particularly epilepsy []. PLP enzymes exist in their resting state as a Schiff base, the aldehyde group of PLP forming a linkage with the epsilon-amino group of an active site lysine residue on the enzyme. The alpha-amino group of the substrate displaces the lysine epsilon-amino group, in the process forming a new aldimine with the substrate. This aldimine is the common central intermediate for all PLP-catalysed reactions, enzymatic and non-enzymatic []. A number of pyridoxal-dependent decarboxylases share regions of sequence similarity, particularly in the vicinity of a conserved lysine residue, which provides the attachment site for the pyridoxal-phosphate (PLP) group [, ]. Among these enzymes are aromatic-L-amino-acid decarboxylase (L-dopa decarboxylase or tryptophan decarboxylase), which catalyses the decarboxylation of tryptophan to tryptamine []; tyrosine decarboxylase, which converts tyrosine into tyramine; and histidine decarboxylase, which catalyses the decarboxylation of histidine to histamine []. These enzymes belong to the group II decarboxylases [, ].; GO: 0016831 carboxy-lyase activity, 0030170 pyridoxal phosphate binding, 0019752 carboxylic acid metabolic process; PDB: 3MC6_A 1XEY_A 1ES0_B 2OKK_A 2JIS_B 2QMA_A 3MAF_B 3MAD_B 3MAU_A 3MBB_A ....

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	448
3vp6_A	511	Structural Characterization Of Glutamic Acid Decarb		1e-82
3vp6_A	511	Structural Characterization Of Glutamic Acid Decarb		2e-43
2okj_A	504	The X-Ray Crystal Structure Of The 67kda Isoform Of		3e-81
2okj_A	504	The X-Ray Crystal Structure Of The 67kda Isoform Of		4e-42
2okk_A	497	The X-Ray Crystal Structure Of The 65kda Isoform Of		2e-80
2okk_A	497	The X-Ray Crystal Structure Of The 65kda Isoform Of		3e-44
2jis_A	515	Human Cysteine Sulfinic Acid Decarboxylase (Csad) I		3e-79
2jis_A	515	Human Cysteine Sulfinic Acid Decarboxylase (Csad) I		6e-46
2qma_A	497	Crystal Structure Of Glutamate Decarboxylase Domain		3e-25
3rbf_A	480	Crystal Structure Of Human Aromatic L-Amino Acid De		4e-22
1js3_A	486	Crystal Structure Of Dopa Decarboxylase In Complex		2e-21
3rch_A	480	Crystal Structure Of Human Aromatic L-Amino Acid De		2e-21
3k40_A	475	Crystal Structure Of Drosophila 3,4-Dihydroxyphenyl		2e-20
4e1o_A	481	Human Histidine Decarboxylase Complex With Histidin		8e-18
3f9t_A	397	Crystal Structure Of L-tyrosine Decarboxylase Mfna		1e-06
3mbb_A	514	Crystal Structure Of Stspl - Apo Form, After Treatm		3e-05
3maf_B	518	Crystal Structure Of Stspl (Asymmetric Form) Length		4e-05
3mau_A	514	Crystal Structure Of Stspl In Complex With Phosphoe		2e-04
3mad_A	514	Crystal Structure Of Stspl (Symmetric Form) Length		2e-04
3maf_A	518	Crystal Structure Of Stspl (Asymmetric Form) Length		2e-04

>pdb|3VP6|A Chain A, Structural Characterization Of Glutamic Acid Decarboxylase; Insights Into The Mechanism Of Autoinactivation Length = 511

Iteration: 1
 Score =  303 bits (777), Expect = 1e-82,   Method: Compositional matrix adjust.
 Identities = 137/239 (57%), Positives = 176/239 (73%)
Query: 9   PGGSISNMYSICLARYRLDPDTKRKGLSHLPPLCMFTSEDSHYSMLKAAHWLGIGMDNVI 68
           PGG+ISNMYSI  ARY+  P+ K KG++ +P L +FTSE SHYS+ KA   LG G DNVI
Sbjct: 161 PGGAISNMYSIMAARYKYFPEVKTKGMAAVPKLVLFTSEQSHYSIKKAGAALGFGTDNVI 220
Query: 69  RVKTNERGQMICSFLEQTIQTSLAEKKIPLFVNATAGTTVLGAFDPLDEIATVCEKYDLW 128
            +K NERG++I +  E  I  +  +  +P +VNATAGTTV GAFDP+ EIA +CEKY+LW
Sbjct: 221 LIKCNERGKIIPADFEAKILEAKQKGYVPFYVNATAGTTVYGAFDPIQEIADICEKYNLW 280
Query: 129 MHVDACWGGSLIFSEKYSFVLKGINRANSVSWNPHKMLGAPLQCSILLIKEKGLLHQANA 188
           +HVDA WGG L+ S K+   L GI RANSV+WNPH M+G  LQCS +L+KEKG+L   N 
Sbjct: 281 LHVDAAWGGGLLMSRKHRHKLNGIERANSVTWNPHXMMGVLLQCSAILVKEKGILQGCNQ 340
Query: 189 TAATYLFQQDKFYDVSFDTGDKSVQCGRKVDAFKLWLMWKARGNLGFRHFVDNAVDCSR 247
             A+YLFQQDK YDVS+DTGDK++QCGR VD FK WLMWKA+G +GF + ++  ++ + 
Sbjct: 341 MHASYLFQQDKHYDVSYDTGDKAIQCGRHVDIFKFWLMWKAKGTVGFENQINKCLELAE 399

>pdb|3VP6|A Chain A, Structural Characterization Of Glutamic Acid Decarboxylase; Insights Into The Mechanism Of Autoinactivation Length = 511

Iteration: 1
 Score =  173 bits (438), Expect = 2e-43,   Method: Compositional matrix adjust.
 Identities = 107/290 (36%), Positives = 160/290 (55%), Gaps = 30/290 (10%)
Query: 164 KMLGAPLQCSILLIKEKGLL-HQANATAATYLFQQDKFYDVSFDTGDKSVQCGRKVDAFK 222
           K++ A  +  IL  K+KG +    NATA T ++        +FD   +      K   + 
Sbjct: 229 KIIPADFEAKILEAKQKGYVPFYVNATAGTTVYG-------AFDPIQEIADICEK---YN 278
Query: 223 LWLMWKARGNLGF------RHFVD-----NAVDCSRGSMTFSTLLCFDL----QGLLHQA 267
           LWL   A    G       RH ++     N+V  +   M    L C  +    +G+L   
Sbjct: 279 LWLHVDAAWGGGLLMSRKHRHKLNGIERANSVTWNPHXMMGVLLQCSAILVKEKGILQGC 338
Query: 268 NATAATYLFQQDKFYDVSFDTGDKSVQCGRKVDAFKLWLMWKARGNLGFRHFVDNAVDCS 327
           N   A+YLFQQDK YDVS+DTGDK++QCGR VD FK WLMWKA+G +GF + ++  ++ +
Sbjct: 339 NQMHASYLFQQDKHYDVSYDTGDKAIQCGRHVDIFKFWLMWKAKGTVGFENQINKCLELA 398
Query: 328 RYFLSQISQRPGFRLVI-PEFQCTNICFWFIPVSLRDKVEDETWWSTLSKVAPRIKEKLV 386
            Y  ++I  R  F +V   E + TN+CFW+IP SLR   +       L KVAP+IK  ++
Sbjct: 399 EYLYAKIKNREEFEMVFNGEPEHTNVCFWYIPQSLRGVPDSPQRREKLHKVAPKIKALMM 458
Query: 387 LGGTLMIGYQPLQHRNLHNFFRLVTTCHPASSRQDMDYAIDQIELRGAEV 436
             GT M+GYQP   +   NFFR+V + +PA+++ D+D+ I++IE  G ++
Sbjct: 459 ESGTTMVGYQPQGDKA--NFFRMVIS-NPAATQSDIDFLIEEIERLGQDL 505

>pdb|2OKJ|A Chain A, The X-Ray Crystal Structure Of The 67kda Isoform Of Glutamic Acid Decarboxylase (Gad67) Length = 504

Iteration: 1
 Score =  298 bits (764), Expect = 3e-81,   Method: Compositional matrix adjust.
 Identities = 136/239 (56%), Positives = 174/239 (72%)
Query: 9   PGGSISNMYSICLARYRLDPDTKRKGLSHLPPLCMFTSEDSHYSMLKAAHWLGIGMDNVI 68
           PGG+ISNMYSI  ARY+  P+ K KG++ +P L +FTSE SHYS+ KA   LG G DNVI
Sbjct: 158 PGGAISNMYSIMAARYKYFPEVKTKGMAAVPKLVLFTSEQSHYSIKKAGAALGFGTDNVI 217
Query: 69  RVKTNERGQMICSFLEQTIQTSLAEKKIPLFVNATAGTTVLGAFDPLDEIATVCEKYDLW 128
            +K NERG++I +  E  I  +  +  +P +VNATAGTTV GAFDP+ EIA +CEKY+LW
Sbjct: 218 LIKCNERGKIIPADFEAKILEAKQKGYVPFYVNATAGTTVYGAFDPIQEIADICEKYNLW 277
Query: 129 MHVDACWGGSLIFSEKYSFVLKGINRANSVSWNPHKMLGAPLQCSILLIKEKGLLHQANA 188
           +HVDA WGG L+ S K+   L GI RANSV+WNPH M+G  LQCS +L+KEKG+L   N 
Sbjct: 278 LHVDAAWGGGLLMSRKHRHKLNGIERANSVTWNPHXMMGVLLQCSAILVKEKGILQGCNQ 337
Query: 189 TAATYLFQQDKFYDVSFDTGDKSVQCGRKVDAFKLWLMWKARGNLGFRHFVDNAVDCSR 247
             A YLFQ DK YDVS+DTGDK++QCGR VD FK WLMWKA+G +GF + ++  ++ + 
Sbjct: 338 MCAGYLFQPDKQYDVSYDTGDKAIQCGRHVDIFKFWLMWKAKGTVGFENQINKCLELAE 396

>pdb|2OKJ|A Chain A, The X-Ray Crystal Structure Of The 67kda Isoform Of Glutamic Acid Decarboxylase (Gad67) Length = 504

Iteration: 1
 Score =  169 bits (427), Expect = 4e-42,   Method: Compositional matrix adjust.
 Identities = 106/290 (36%), Positives = 158/290 (54%), Gaps = 30/290 (10%)
Query: 164 KMLGAPLQCSILLIKEKGLL-HQANATAATYLFQQDKFYDVSFDTGDKSVQCGRKVDAFK 222
           K++ A  +  IL  K+KG +    NATA T ++        +FD   +      K   + 
Sbjct: 226 KIIPADFEAKILEAKQKGYVPFYVNATAGTTVYG-------AFDPIQEIADICEK---YN 275
Query: 223 LWLMWKARGNLGF------RHFVD-----NAVDCSRGSMTFSTLLCFDL----QGLLHQA 267
           LWL   A    G       RH ++     N+V  +   M    L C  +    +G+L   
Sbjct: 276 LWLHVDAAWGGGLLMSRKHRHKLNGIERANSVTWNPHXMMGVLLQCSAILVKEKGILQGC 335
Query: 268 NATAATYLFQQDKFYDVSFDTGDKSVQCGRKVDAFKLWLMWKARGNLGFRHFVDNAVDCS 327
           N   A YLFQ DK YDVS+DTGDK++QCGR VD FK WLMWKA+G +GF + ++  ++ +
Sbjct: 336 NQMCAGYLFQPDKQYDVSYDTGDKAIQCGRHVDIFKFWLMWKAKGTVGFENQINKCLELA 395
Query: 328 RYFLSQISQRPGFRLVI-PEFQCTNICFWFIPVSLRDKVEDETWWSTLSKVAPRIKEKLV 386
            Y  ++I  R  F +V   E + TN+CFW+IP SLR   +       L KVAP+IK  ++
Sbjct: 396 EYLYAKIKNREEFEMVFNGEPEHTNVCFWYIPQSLRGVPDSPQRREKLHKVAPKIKALMM 455
Query: 387 LGGTLMIGYQPLQHRNLHNFFRLVTTCHPASSRQDMDYAIDQIELRGAEV 436
             GT M+GYQP   +   NFFR+V + +PA+++ D+D+ I++IE  G ++
Sbjct: 456 ESGTTMVGYQPQGDKA--NFFRMVIS-NPAATQSDIDFLIEEIERLGQDL 502

>pdb|2OKK|A Chain A, The X-Ray Crystal Structure Of The 65kda Isoform Of Glutamic Acid Decarboxylase (Gad65) Length = 497

Iteration: 1
 Score =  296 bits (757), Expect = 2e-80,   Method: Compositional matrix adjust.
 Identities = 133/239 (55%), Positives = 178/239 (74%)
Query: 9   PGGSISNMYSICLARYRLDPDTKRKGLSHLPPLCMFTSEDSHYSMLKAAHWLGIGMDNVI 68
           PGG+ISNMY++ +AR+++ P+ K KG++ LP L  FTSE SH+S+ K A  LGIG D+VI
Sbjct: 154 PGGAISNMYAMMIARFKMFPEVKEKGMAALPRLIAFTSEHSHFSLKKGAAALGIGTDSVI 213
Query: 69  RVKTNERGQMICSFLEQTIQTSLAEKKIPLFVNATAGTTVLGAFDPLDEIATVCEKYDLW 128
            +K +ERG+MI S LE+ I  +  +  +P  V+ATAGTTV GAFDPL  +A +C+KY +W
Sbjct: 214 LIKCDERGKMIPSDLERRILEAKQKGFVPFLVSATAGTTVYGAFDPLLAVADICKKYKIW 273
Query: 129 MHVDACWGGSLIFSEKYSFVLKGINRANSVSWNPHKMLGAPLQCSILLIKEKGLLHQANA 188
           MHVDA WGG L+ S K+ + L G+ RANSV+WNPH M+G PLQCS LL++E+GL+   N 
Sbjct: 274 MHVDAAWGGGLLMSRKHKWKLSGVERANSVTWNPHXMMGVPLQCSALLVREEGLMQNCNQ 333
Query: 189 TAATYLFQQDKFYDVSFDTGDKSVQCGRKVDAFKLWLMWKARGNLGFRHFVDNAVDCSR 247
             A+YLFQQDK YD+S+DTGDK++QCGR VD FKLWLMW+A+G  GF   VD  ++ + 
Sbjct: 334 MHASYLFQQDKHYDLSYDTGDKALQCGRHVDVFKLWLMWRAKGTTGFEAHVDKCLELAE 392

>pdb|2OKK|A Chain A, The X-Ray Crystal Structure Of The 65kda Isoform Of Glutamic Acid Decarboxylase (Gad65) Length = 497

Iteration: 1
 Score =  176 bits (445), Expect = 3e-44,   Method: Compositional matrix adjust.
 Identities = 110/289 (38%), Positives = 162/289 (56%), Gaps = 30/289 (10%)
Query: 164 KMLGAPLQCSILLIKEKGLL-HQANATAATYLFQQDKFYDVSFDTGDKSVQCGRKVDAFK 222
           KM+ + L+  IL  K+KG +    +ATA T ++        +FD         +K   +K
Sbjct: 222 KMIPSDLERRILEAKQKGFVPFLVSATAGTTVYG-------AFDPLLAVADICKK---YK 271
Query: 223 LWL----MWKARGNLGFRH-------FVDNAVDCSRGSMTFSTLLCFDL----QGLLHQA 267
           +W+     W     +  +H          N+V  +   M    L C  L    +GL+   
Sbjct: 272 IWMHVDAAWGGGLLMSRKHKWKLSGVERANSVTWNPHXMMGVPLQCSALLVREEGLMQNC 331
Query: 268 NATAATYLFQQDKFYDVSFDTGDKSVQCGRKVDAFKLWLMWKARGNLGFRHFVDNAVDCS 327
           N   A+YLFQQDK YD+S+DTGDK++QCGR VD FKLWLMW+A+G  GF   VD  ++ +
Sbjct: 332 NQMHASYLFQQDKHYDLSYDTGDKALQCGRHVDVFKLWLMWRAKGTTGFEAHVDKCLELA 391
Query: 328 RYFLSQISQRPGFRLVIP-EFQCTNICFWFIPVSLRDKVEDETWWSTLSKVAPRIKEKLV 386
            Y  + I  R G+ +V   + Q TN+CFW+IP SLR   ++E   S LSKVAP IK +++
Sbjct: 392 EYLYNIIKNREGYEMVFDGKPQHTNVCFWYIPPSLRTLEDNEERMSRLSKVAPVIKARMM 451
Query: 387 LGGTLMIGYQPLQHRNLHNFFRLVTTCHPASSRQDMDYAIDQIELRGAE 435
             GT M+ YQPL  +   NFFR+V + +PA++ QD+D+ I++IE  G +
Sbjct: 452 EYGTTMVSYQPLGDKV--NFFRMVIS-NPAATHQDIDFLIEEIERLGQD 497

>pdb|2JIS|A Chain A, Human Cysteine Sulfinic Acid Decarboxylase (Csad) In Complex With Plp. Length = 515

Iteration: 1
 Score =  291 bits (746), Expect = 3e-79,   Method: Compositional matrix adjust.
 Identities = 135/240 (56%), Positives = 181/240 (75%), Gaps = 1/240 (0%)
Query: 9   PGGSISNMYSICLARYRLDPDTKRKGLSHLPPLCMFTSEDSHYSMLKAAHWLGIGMDNVI 68
           PGGSISNMY++ LARY+  PD K++GL  LPPL +FTS++ HYS+ K A +LG+G D+V 
Sbjct: 172 PGGSISNMYAVNLARYQRYPDCKQRGLRTLPPLALFTSKECHYSIQKGAAFLGLGTDSVR 231
Query: 69  RVKTNERGQMICSFLEQTIQTSLAEKKIPLFVNATAGTTVLGAFDPLDEIATVCEKYDLW 128
            VK +ERG+M+   LE+ I  + AE  +P  V+AT+GTTVLGAFDPL+ IA VC+++ LW
Sbjct: 232 VVKADERGKMVPEDLERQIGMAEAEGAVPFLVSATSGTTVLGAFDPLEAIADVCQRHGLW 291
Query: 129 MHVDACWGGSLIFSEKYSFVLKGINRANSVSWNPHKMLGAPLQCSILLIKE-KGLLHQAN 187
           +HVDA WGGS++ S+ +  +L GI RA+SV+WNPHK+L A LQCS LL+++   LL + +
Sbjct: 292 LHVDAAWGGSVLLSQTHRHLLDGIQRADSVAWNPHKLLAAGLQCSALLLQDTSNLLKRCH 351
Query: 188 ATAATYLFQQDKFYDVSFDTGDKSVQCGRKVDAFKLWLMWKARGNLGFRHFVDNAVDCSR 247
            + A+YLFQQDKFYDV+ DTGDK VQCGR+VD  KLWLMWKA+G+ G    +D A   +R
Sbjct: 352 GSQASYLFQQDKFYDVALDTGDKVVQCGRRVDCLKLWLMWKAQGDQGLERRIDQAFVLAR 411

>pdb|2JIS|A Chain A, Human Cysteine Sulfinic Acid Decarboxylase (Csad) In Complex With Plp. Length = 515

Iteration: 1
 Score =  181 bits (460), Expect = 6e-46,   Method: Compositional matrix adjust.
 Identities = 91/185 (49%), Positives = 124/185 (67%), Gaps = 6/185 (3%)
Query: 253 STLLCFDLQGLLHQANATAATYLFQQDKFYDVSFDTGDKSVQCGRKVDAFKLWLMWKARG 312
           S LL  D   LL + + + A+YLFQQDKFYDV+ DTGDK VQCGR+VD  KLWLMWKA+G
Sbjct: 336 SALLLQDTSNLLKRCHGSQASYLFQQDKFYDVALDTGDKVVQCGRRVDCLKLWLMWKAQG 395
Query: 313 NLGFRHFVDNAVDCSRYFLSQISQRPGFRLVI-PEFQCTNICFWFIPVSLRDKVEDETWW 371
           + G    +D A   +RY + ++ +R GF LV+ PEF   N+CFWF+P SLR K E   + 
Sbjct: 396 DQGLERRIDQAFVLARYLVEEMKKREGFELVMEPEF--VNVCFWFVPPSLRGKQESPDYH 453
Query: 372 STLSKVAPRIKEKLVLGGTLMIGYQPLQHRNLHNFFRLVTTCHPASSRQDMDYAIDQIEL 431
             LSKVAP +KE++V  G++MIGYQP  H    NFFR+V   + A +  DMD+ ++++E 
Sbjct: 454 ERLSKVAPVLKERMVKEGSMMIGYQP--HGTRGNFFRVVVA-NSALTCADMDFLLNELER 510
Query: 432 RGAEV 436
            G ++
Sbjct: 511 LGQDL 515

>pdb|2QMA|A Chain A, Crystal Structure Of Glutamate Decarboxylase Domain Of Diaminobutyrate-Pyruvate Transaminase And L-2,4-Diaminobutyrate Decarboxylase From Vibrio Parahaemolyticus Length = 497

Iteration: 1
 Score =  112 bits (281), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 81/232 (34%), Positives = 121/232 (52%), Gaps = 19/232 (8%)
Query: 10  GGSISNMYSICLARY----RLDPDTKRK-GL-SHLPPLCMFTSEDSHYSMLKAAHWLGIG 63
           GG+ SN   + LAR     +L   + +K GL  +   L +  S+ SH+++ K+A W G+G
Sbjct: 166 GGTQSNQXGLXLARDWIADKLSGHSIQKLGLPDYADKLRIVCSKKSHFTVQKSASWXGLG 225
Query: 64  MDNVIRVKTNERGQMICSFLEQTIQTSLAEKKIPLFVNATAGTTVLGAFDPLDEIATVCE 123
              V  V  N  G    + L++ I  + AE  IP  +  TAGTT  GA D LD IA    
Sbjct: 226 EKAVXTVDANADGTXDITKLDEVIAQAKAEGLIPFAIVGTAGTTDHGAIDDLDFIADXAV 285
Query: 124 KYDLWMHVDACWGGSLIFSEKYSFVLKGINRANSVSWNPHKMLGAPLQCSILLIKEKG-- 181
           K+D W HVD  +GG+LI S   S  LKG+ RA+S+S + HK+    + C  LL+ +K   
Sbjct: 286 KHDXWXHVDGAYGGALILSSHKSR-LKGVERAHSISVDFHKLFYQTISCGALLVNDKSNF 344
Query: 182 --LLHQANATAATYLFQQDKFYDVSFDTGDKSVQCGRKVDAFKLWLMWKARG 231
             LLH A+     YL ++   +D   +  DKS+   ++ DA K++   +  G
Sbjct: 345 KFLLHHAD-----YLNRE---HDELPNLVDKSIATTKRFDALKVFXTXQNVG 388

>pdb|3RBF|A Chain A, Crystal Structure Of Human Aromatic L-Amino Acid Decarboxylase (Aadc) In The Apo Form Length = 480

Iteration: 1
 Score =  102 bits (254), Expect = 4e-22,   Method: Compositional matrix adjust.
 Identities = 75/287 (26%), Positives = 130/287 (45%), Gaps = 22/287 (7%)
Query: 41  LCMFTSEDSHYSMLKAAHWLGIGMDNVIRVKTNERGQMICSFLEQTIQTSLAEKKIPLFV 100
           L  ++S+ +H S+ +A    G+ +  +    ++    M  S L++ ++   A   IP F+
Sbjct: 183 LVAYSSDQAHSSVERAGLIGGVKLKAI---PSDGNFAMRASALQEALERDKAAGLIPFFM 239
Query: 101 NATAGTTVLGAFDPLDEIATVCEKYDLWMHVDACWGGSLIFSEKYSFVLKGINRANSVSW 160
            AT GTT   +FD L E+  +C K D+W+HVDA + GS     ++  +L G+  A+S ++
Sbjct: 240 VATLGTTTCCSFDNLLEVGPICNKEDIWLHVDAAYAGSAFICPEFRHLLNGVEFADSFNF 299
Query: 161 NPHKMLGAPLQCSILLIKEKGLLHQANATAATYLFQQDKFYDVSFDTGDKSVQCGRKVDA 220
           NPHK L     CS + +K++  L  A     TYL    +   +  D     +  GR+  +
Sbjct: 300 NPHKWLLVNFDCSAMWVKKRTDLTGAFRLDPTYLKHSHQDSGLITDYRHWQIPLGRRFRS 359
Query: 221 FKLWLMWKARGNLGFRHFVDNAVDCS-------RGSMTFST-------LLCFDLQGLLHQ 266
            K+W +++  G  G + ++   V  S       R    F         L+CF L+G  ++
Sbjct: 360 LKMWFVFRMYGVKGLQAYIRKHVQLSHEFESLVRQDPRFEICVEVILGLVCFRLKG-SNK 418
Query: 267 ANATAATYLFQQDKFYDVSFDTGDKSVQ----CGRKVDAFKLWLMWK 309
            N      +    K + V     DK V     C R V++  +   W+
Sbjct: 419 VNEALLQRINSAKKIHLVPCHLRDKFVLRFAICSRTVESAHVQRAWE 465

>pdb|1JS3|A Chain A, Crystal Structure Of Dopa Decarboxylase In Complex With The Inhibitor Carbidopa Length = 486

Iteration: 1
 Score =  100 bits (249), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 76/295 (25%), Positives = 131/295 (44%), Gaps = 32/295 (10%)
Query: 38  LPPLCMFTSEDSHYSMLKAAHWLGIGMDNVIRVKTNERGQMICSFLEQTIQTSLAEKKIP 97
           L  L  + S+ +H S+ +A     IG   +  + ++ +  M  S L++ ++   A   IP
Sbjct: 180 LEKLVAYASDQAHSSVERAGL---IGGVKLKAIPSDGKFAMRASALQEALERDKAAGLIP 236
Query: 98  LFVNATAGTTVLGAFDPLDEIATVCEKYDLWMHVDACWGGSLIFSEKYSFVLKGINRANS 157
            FV AT GTT   +FD L E+  +C + D+W+HVDA + GS     ++  +L G+  A+S
Sbjct: 237 FFVVATLGTTSCCSFDNLLEVGPICHEEDIWLHVDAAYAGSAFICPEFRHLLNGVEFADS 296
Query: 158 VSWNPHKMLGAPLQCSILLIKEKGLLHQANATAATYLFQQDKFYDVSFDTGDKSVQCGRK 217
            ++NPHK L     CS + +K +  L  A      YL    +   +  D     +  GR+
Sbjct: 297 FNFNPHKWLLVNFDCSAMWVKRRTDLTGAFKLDPVYLKHSHQGSGLITDYRHWQLPLGRR 356
Query: 218 VDAFKLWLMWKARGNLGFRHFVDNAVDCSRGSMTFST--------------LLCFDLQG- 262
             + K+W +++  G  G + ++   V  S     F                L+CF L+G 
Sbjct: 357 FRSLKMWFVFRMYGVKGLQAYIRKHVQLSHEFEAFVLQDPRFEVCAEVTLGLVCFRLKGS 416
Query: 263 ------LLHQANATAATYLF--QQDKFYDVSFDTGDKSVQCGRKVDAFKLWLMWK 309
                 LL + N+    +L   +    + + F        C RKV++  + L W+
Sbjct: 417 DGLNEALLERINSARKIHLVPCRLRGQFVLRFAI------CSRKVESGHVRLAWE 465

>pdb|3RCH|A Chain A, Crystal Structure Of Human Aromatic L-Amino Acid Decarboxylase (Aadc) In The Open Conformation With Llp And Plp Bound To Chain-A And Chain- B Respectively Length = 480

Iteration: 1
 Score =  100 bits (249), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 74/287 (25%), Positives = 129/287 (44%), Gaps = 22/287 (7%)
Query: 41  LCMFTSEDSHYSMLKAAHWLGIGMDNVIRVKTNERGQMICSFLEQTIQTSLAEKKIPLFV 100
           L  ++S+ +H S+ +A    G+ +  +    ++    M  S L++ ++   A   IP F+
Sbjct: 183 LVAYSSDQAHSSVERAGLIGGVKLKAI---PSDGNFAMRASALQEALERDKAAGLIPFFM 239
Query: 101 NATAGTTVLGAFDPLDEIATVCEKYDLWMHVDACWGGSLIFSEKYSFVLKGINRANSVSW 160
            AT GTT   +FD L E+  +C K D+W+HVDA + GS     ++  +L G+  A+S ++
Sbjct: 240 VATLGTTTCCSFDNLLEVGPICNKEDIWLHVDAAYAGSAFICPEFRHLLNGVEFADSFNF 299
Query: 161 NPHKMLGAPLQCSILLIKEKGLLHQANATAATYLFQQDKFYDVSFDTGDKSVQCGRKVDA 220
           NPH  L     CS + +K++  L  A     TYL    +   +  D     +  GR+  +
Sbjct: 300 NPHXWLLVNFDCSAMWVKKRTDLTGAFRLDPTYLKHSHQDSGLITDYRHWQIPLGRRFRS 359
Query: 221 FKLWLMWKARGNLGFRHFVDNAVDCS-------RGSMTFST-------LLCFDLQGLLHQ 266
            K+W +++  G  G + ++   V  S       R    F         L+CF L+G  ++
Sbjct: 360 LKMWFVFRMYGVKGLQAYIRKHVQLSHEFESLVRQDPRFEICVEVILGLVCFRLKG-SNK 418
Query: 267 ANATAATYLFQQDKFYDVSFDTGDKSVQ----CGRKVDAFKLWLMWK 309
            N      +    K + V     DK V     C R V++  +   W+
Sbjct: 419 VNEALLQRINSAKKIHLVPCHLRDKFVLRFAICSRTVESAHVQRAWE 465

>pdb|3K40|A Chain A, Crystal Structure Of Drosophila 3,4-Dihydroxyphenylalanine Decarboxylase Length = 475

Iteration: 1
 Score = 97.4 bits (241), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 81/267 (30%), Positives = 123/267 (46%), Gaps = 28/267 (10%)
Query: 41  LCMFTSEDSHYSMLKAAHWLGIGMDNVIRVKTNERGQMICSFLEQTIQTSLAEKKIPLFV 100
           L  + S+ +H S+ +A    G+ + +V     +E  +M  + LE+ I+  +AE  IP + 
Sbjct: 183 LVGYCSDQAHSSVERAGLLGGVKLRSV----QSENHRMRGAALEKAIEQDVAEGLIPFYA 238
Query: 101 NATAGTTVLGAFDPLDEIATVCEKYDLWMHVDACWGGSLIFSEKYSFVLKGINRANSVSW 160
             T GTT   AFD LDE   V  K++LW+HVDA + GS     +Y  ++KGI  A+S ++
Sbjct: 239 VVTLGTTNSCAFDYLDECGPVGNKHNLWIHVDAAYAGSAFICPEYRHLMKGIESADSFNF 298
Query: 161 NPHKMLGAPLQCSILLIKEKGLLHQANATAATYLFQQDKFYDVSFDTGDKSVQCGRKVDA 220
           NPH  +     CS + +K+   +   NA     L+ +      + D     +  GR+  A
Sbjct: 299 NPHXWMLVNFDCSAMWLKDPSWV--VNAFNVDPLYLKHDMQGSAPDYRHWQIPLGRRFRA 356
Query: 221 FKLWLMWKARG--NLGF---RH------FVDNAVDCSRGSMTFST---LLCFDLQG---- 262
            KLW + +  G  NL     RH      F D  V  SR  +       L+CF L+G    
Sbjct: 357 LKLWFVLRLYGVENLQAHIRRHCNFAKQFGDLCVADSRFELAAEINMGLVCFRLKGSNER 416
Query: 263 ---LLHQANATAATYLFQQDKFYDVSF 286
              LL + N     +L    K  DV F
Sbjct: 417 NEALLKRINGRGHIHLVPA-KIKDVYF 442

>pdb|4E1O|A Chain A, Human Histidine Decarboxylase Complex With Histidine Methyl Ester (Hme) Length = 481

Iteration: 1
 Score = 88.2 bits (217), Expect = 8e-18,   Method: Compositional matrix adjust.
 Identities = 60/228 (26%), Positives = 110/228 (48%), Gaps = 21/228 (9%)
Query: 27  DPDTKRKGLSHLPPLCMFTSEDSHYSMLKAAHWLGIGMDNVIRVKT-------NERGQMI 79
           +PD     L+    L  + S+ +H S+ KA      G+ +++++K        + RG+ +
Sbjct: 177 EPDADESSLNAR--LVAYASDQAHSSVEKA------GLISLVKMKFLPVDDNFSLRGEAL 228
Query: 80  CSFLEQTIQTSLAEKKIPLFVNATAGTTVLGAFDPLDEIATVCEKYDLWMHVDACWGGSL 139
              +E+  Q  L    +P+FV AT GTT + AFD L E+  +C +  LW+H+DA + G+ 
Sbjct: 229 QKAIEEDKQRGL----VPVFVCATLGTTGVCAFDXLSELGPICAREGLWLHIDAAYAGTA 284
Query: 140 IFSEKYSFVLKGINRANSVSWNPHKMLGAPLQCSILLIKEKGLLHQANATAATYLFQQDK 199
               ++   LKGI  A+S ++NP K +     C+   +K+K  L Q  +    YL   + 
Sbjct: 285 FLCPEFRGFLKGIEYADSFTFNPSKWMMVHFDCTGFWVKDKYKLQQTFSVNPIYLRHANS 344
Query: 200 FYDVSFDTGDKSVQCGRKVDAFKLWLMWKARGNLGFRHFVDNAVDCSR 247
              V+ D     +   R+  + KLW + ++ G    +  V +  + ++
Sbjct: 345 --GVATDFMHWQIPLSRRFRSVKLWFVIRSFGVKNLQAHVRHGTEMAK 390

>pdb|3F9T|A Chain A, Crystal Structure Of L-tyrosine Decarboxylase Mfna (ec 4.1.1.25) (np_247014.1) From Methanococcus Jannaschii At 2.11 A Resolution Length = 397

Iteration: 1
 Score = 51.2 bits (121), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 28/89 (31%), Positives = 50/89 (56%), Gaps = 11/89 (12%)
Query: 102 ATAGTTVLGAFDPLDEIATVCEKYDLWMHVDACWGGSLI--FSEKYSFVLKGINR----- 154
             AGTT LG  D ++E++ + ++ ++++HVDA +GG +I    +KY    KG+N      
Sbjct: 177 GIAGTTELGTIDNIEELSKIAKENNIYIHVDAAFGGLVIPFLDDKYK--KKGVNYKFDFS 234
Query: 155 --ANSVSWNPHKMLGAPLQCSILLIKEKG 181
              +S++ +PHK    P+    +L K+ G
Sbjct: 235 LGVDSITIDPHKXGHCPIPSGGILFKDIG 263

>pdb|3MBB|A Chain A, Crystal Structure Of Stspl - Apo Form, After Treatment With Semicarbazide Length = 514

Iteration: 1
 Score = 46.6 bits (109), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 37/144 (25%), Positives = 67/144 (46%), Gaps = 20/144 (13%)
Query: 49  SHYSMLKAAHWLGIGMDNVIRVKTNERGQMICSFLEQTIQTSLAEKKIPLFVNATAGTTV 108
           +H +  KAA + GI    ++R   +   +   + + + I  +       + V  +A    
Sbjct: 201 AHAAFDKAAQYFGI---KLVRTPLDADYRADVAAMREAITPNT------VVVAGSAPGXP 251
Query: 109 LGAFDPLDEIATVCEKYDLWMHVDACWGGSLI-FSEK-------YSFVLKGINRANSVSW 160
            G  DP+ EIA +  ++ +  HVDAC GG ++ ++E+       + F L+G+    SVS 
Sbjct: 252 HGVVDPIPEIAALAAEHGIGCHVDACLGGFILPWAERLGYPVPPFDFRLEGV---TSVSA 308
Query: 161 NPHKMLGAPLQCSILLIKEKGLLH 184
           + HK        S++L +   LLH
Sbjct: 309 DTHKYGYGAKGTSVILYRRPDLLH 332

>pdb|3MAF|B Chain B, Crystal Structure Of Stspl (Asymmetric Form) Length = 518

Iteration: 1
 Score = 46.2 bits (108), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 37/144 (25%), Positives = 67/144 (46%), Gaps = 20/144 (13%)
Query: 49  SHYSMLKAAHWLGIGMDNVIRVKTNERGQMICSFLEQTIQTSLAEKKIPLFVNATAGTTV 108
           +H +  KAA + GI    ++R   +   +   + + + I  +       + V  +A    
Sbjct: 205 AHAAFDKAAQYFGI---KLVRTPLDADYRADVAAMREAITPNT------VVVAGSAPGYP 255
Query: 109 LGAFDPLDEIATVCEKYDLWMHVDACWGGSLI-FSEK-------YSFVLKGINRANSVSW 160
            G  DP+ EIA +  ++ +  HVDAC GG ++ ++E+       + F L+G+    SVS 
Sbjct: 256 HGVVDPIPEIAALAAEHGIGCHVDACLGGFILPWAERLGYPVPPFDFRLEGV---TSVSA 312
Query: 161 NPHKMLGAPLQCSILLIKEKGLLH 184
           + HK        S++L +   LLH
Sbjct: 313 DTHKYGYGAKGTSVILYRRPDLLH 336

>pdb|3MAU|A Chain A, Crystal Structure Of Stspl In Complex With Phosphoethanolamine Length = 514

Iteration: 1
 Score = 43.9 bits (102), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 36/144 (25%), Positives = 66/144 (45%), Gaps = 20/144 (13%)
Query: 49  SHYSMLKAAHWLGIGMDNVIRVKTNERGQMICSFLEQTIQTSLAEKKIPLFVNATAGTTV 108
           +H +  KAA + GI    ++R   +   +   + + + I  +       + V  +A    
Sbjct: 201 AHAAFDKAAQYFGI---KLVRTPLDADYRADVAAMREAITPNT------VVVAGSAPGYP 251
Query: 109 LGAFDPLDEIATVCEKYDLWMHVDACWGGSLI-FSEK-------YSFVLKGINRANSVSW 160
            G  DP+ EIA +  ++ +  HVDAC GG ++ ++E+       + F L+G+    SVS 
Sbjct: 252 HGVVDPIPEIAALAAEHGIGCHVDACLGGFILPWAERLGYPVPPFDFRLEGV---TSVSA 308
Query: 161 NPHKMLGAPLQCSILLIKEKGLLH 184
           + H         S++L +   LLH
Sbjct: 309 DTHAYGYGAKGTSVILYRRPDLLH 332

>pdb|3MAD|A Chain A, Crystal Structure Of Stspl (Symmetric Form) Length = 514

Iteration: 1
 Score = 43.9 bits (102), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 36/144 (25%), Positives = 66/144 (45%), Gaps = 20/144 (13%)
Query: 49  SHYSMLKAAHWLGIGMDNVIRVKTNERGQMICSFLEQTIQTSLAEKKIPLFVNATAGTTV 108
           +H +  KAA + GI    ++R   +   +   + + + I  +       + V  +A    
Sbjct: 201 AHAAFDKAAQYFGI---KLVRTPLDADYRADVAAMREAITPNT------VVVAGSAPGYP 251
Query: 109 LGAFDPLDEIATVCEKYDLWMHVDACWGGSLI-FSEK-------YSFVLKGINRANSVSW 160
            G  DP+ EIA +  ++ +  HVDAC GG ++ ++E+       + F L+G+    SVS 
Sbjct: 252 HGVVDPIPEIAALAAEHGIGCHVDACLGGFILPWAERLGYPVPPFDFRLEGV---TSVSA 308
Query: 161 NPHKMLGAPLQCSILLIKEKGLLH 184
           + H         S++L +   LLH
Sbjct: 309 DTHXYGYGAKGTSVILYRRPDLLH 332

>pdb|3MAF|A Chain A, Crystal Structure Of Stspl (Asymmetric Form) Length = 518

Iteration: 1
 Score = 43.9 bits (102), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 36/144 (25%), Positives = 66/144 (45%), Gaps = 20/144 (13%)
Query: 49  SHYSMLKAAHWLGIGMDNVIRVKTNERGQMICSFLEQTIQTSLAEKKIPLFVNATAGTTV 108
           +H +  KAA + GI    ++R   +   +   + + + I  +       + V  +A    
Sbjct: 205 AHAAFDKAAQYFGI---KLVRTPLDADYRADVAAMREAITPNT------VVVAGSAPGYP 255
Query: 109 LGAFDPLDEIATVCEKYDLWMHVDACWGGSLI-FSEK-------YSFVLKGINRANSVSW 160
            G  DP+ EIA +  ++ +  HVDAC GG ++ ++E+       + F L+G+    SVS 
Sbjct: 256 HGVVDPIPEIAALAAEHGIGCHVDACLGGFILPWAERLGYPVPPFDFRLEGV---TSVSA 312
Query: 161 NPHKMLGAPLQCSILLIKEKGLLH 184
           + H         S++L +   LLH
Sbjct: 313 DTHXYGYGAKGTSVILYRRPDLLH 336

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	448
2okj_A	504	Glutamate decarboxylase 1; PLP-dependent decarboxy	1e-117
2okj_A	504	Glutamate decarboxylase 1; PLP-dependent decarboxy	7e-53
2jis_A	515	Cysteine sulfinic acid decarboxylase; pyridoxal ph	1e-114
2jis_A	515	Cysteine sulfinic acid decarboxylase; pyridoxal ph	2e-53
2qma_A	497	Diaminobutyrate-pyruvate transaminase and L-2,4- d	1e-104
2qma_A	497	Diaminobutyrate-pyruvate transaminase and L-2,4- d	3e-38
4e1o_A	481	HDC, histidine decarboxylase; lyase; HET: PLP PVH;	5e-86
4e1o_A	481	HDC, histidine decarboxylase; lyase; HET: PLP PVH;	3e-31
1js3_A	486	DDC;, DOPA decarboxylase; carbidopa, parkinson'S d	2e-85
1js3_A	486	DDC;, DOPA decarboxylase; carbidopa, parkinson'S d	6e-31
3k40_A	475	Aromatic-L-amino-acid decarboxylase; PLP dependent	2e-84
3k40_A	475	Aromatic-L-amino-acid decarboxylase; PLP dependent	2e-30
2z67_A	456	O-phosphoseryl-tRNA(SEC) selenium transferase; sel	2e-37
3f9t_A	397	TDC, L-tyrosine decarboxylase MFNA; NP_247014.1, L	3e-37
3mad_A	514	Sphingosine-1-phosphate lyase; carboxy-lyase activ	2e-26
3mc6_A	497	Sphingosine-1-phosphate lyase; carboxy-lyase activ	5e-23
3hbx_A	502	GAD 1, glutamate decarboxylase 1; calmodulin-bindi	6e-23
2dgk_A	452	GAD-beta, GADB, glutamate decarboxylase beta; gadb	9e-23
3bc8_A	450	O-phosphoseryl-tRNA(SEC) selenium transferase; dis	7e-11
3hl2_A	501	O-phosphoseryl-tRNA(SEC) selenium transferase; sel	7e-10
2x3l_A	446	ORN/Lys/Arg decarboxylase family protein; lyase; H	3e-04
2vyc_A	755	Biodegradative arginine decarboxylase; pyridoxal p	4e-04
3n75_A	715	LDC, lysine decarboxylase, inducible; pyridoxal-5'	4e-04
1c4k_A	730	Protein (ornithine decarboxylase); lyase; HET: PLP	5e-04
2e7j_A	371	SEP-tRNA:Cys-tRNA synthase; seven-stranded BETE-st	6e-04

>2okj_A Glutamate decarboxylase 1; PLP-dependent decarboxylase, lyase; HET: LLP PLZ; 2.30A {Homo sapiens} PDB: 2okk_A* Length = 504

 Score =  350 bits (900), Expect = e-117
 Identities = 137/241 (56%), Positives = 175/241 (72%)

Query: 7   LLPGGSISNMYSICLARYRLDPDTKRKGLSHLPPLCMFTSEDSHYSMLKAAHWLGIGMDN 66
             PGG+ISNMYSI  ARY+  P+ K KG++ +P L +FTSE SHYS+ KA   LG G DN
Sbjct: 156 FSPGGAISNMYSIMAARYKYFPEVKTKGMAAVPKLVLFTSEQSHYSIKKAGAALGFGTDN 215

Query: 67  VIRVKTNERGQMICSFLEQTIQTSLAEKKIPLFVNATAGTTVLGAFDPLDEIATVCEKYD 126
           VI +K NERG++I +  E  I  +  +  +P +VNATAGTTV GAFDP+ EIA +CEKY+
Sbjct: 216 VILIKCNERGKIIPADFEAKILEAKQKGYVPFYVNATAGTTVYGAFDPIQEIADICEKYN 275

Query: 127 LWMHVDACWGGSLIFSEKYSFVLKGINRANSVSWNPHKMLGAPLQCSILLIKEKGLLHQA 186
           LW+HVDA WGG L+ S K+   L GI RANSV+WNPHKM+G  LQCS +L+KEKG+L   
Sbjct: 276 LWLHVDAAWGGGLLMSRKHRHKLNGIERANSVTWNPHKMMGVLLQCSAILVKEKGILQGC 335

Query: 187 NATAATYLFQQDKFYDVSFDTGDKSVQCGRKVDAFKLWLMWKARGNLGFRHFVDNAVDCS 246
           N   A YLFQ DK YDVS+DTGDK++QCGR VD FK WLMWKA+G +GF + ++  ++ +
Sbjct: 336 NQMCAGYLFQPDKQYDVSYDTGDKAIQCGRHVDIFKFWLMWKAKGTVGFENQINKCLELA 395

Query: 247 R 247
            
Sbjct: 396 E 396

>2okj_A Glutamate decarboxylase 1; PLP-dependent decarboxylase, lyase; HET: LLP PLZ; 2.30A {Homo sapiens} PDB: 2okk_A* Length = 504

 Score =  184 bits (468), Expect = 7e-53
 Identities = 78/176 (44%), Positives = 113/176 (64%), Gaps = 4/176 (2%)

Query: 262 GLLHQANATAATYLFQQDKFYDVSFDTGDKSVQCGRKVDAFKLWLMWKARGNLGFRHFVD 321
           G+L   N   A YLFQ DK YDVS+DTGDK++QCGR VD FK WLMWKA+G +GF + ++
Sbjct: 330 GILQGCNQMCAGYLFQPDKQYDVSYDTGDKAIQCGRHVDIFKFWLMWKAKGTVGFENQIN 389

Query: 322 NAVDCSRYFLSQISQRPGFRLVIP-EFQCTNICFWFIPVSLRDKVEDETWWSTLSKVAPR 380
             ++ + Y  ++I  R  F +V   E + TN+CFW+IP SLR   +       L KVAP+
Sbjct: 390 KCLELAEYLYAKIKNREEFEMVFNGEPEHTNVCFWYIPQSLRGVPDSPQRREKLHKVAPK 449

Query: 381 IKEKLVLGGTLMIGYQPLQHRNLHNFFRLVTTCHPASSRQDMDYAIDQIELRGAEV 436
           IK  ++  GT M+GYQP   +   NFFR +   +PA+++ D+D+ I++IE  G ++
Sbjct: 450 IKALMMESGTTMVGYQPQGDK--ANFFR-MVISNPAATQSDIDFLIEEIERLGQDL 502

>2jis_A Cysteine sulfinic acid decarboxylase; pyridoxal phosphate, alternative splicing, pyridoxal phosphate (PLP), structural genomics consortium (SGC); HET: PLP; 1.6A {Homo sapiens} Length = 515

 Score =  343 bits (882), Expect = e-114
 Identities = 135/242 (55%), Positives = 181/242 (74%), Gaps = 1/242 (0%)

Query: 7   LLPGGSISNMYSICLARYRLDPDTKRKGLSHLPPLCMFTSEDSHYSMLKAAHWLGIGMDN 66
             PGGSISNMY++ LARY+  PD K++GL  LPPL +FTS++ HYS+ K A +LG+G D+
Sbjct: 170 FCPGGSISNMYAVNLARYQRYPDCKQRGLRTLPPLALFTSKECHYSIQKGAAFLGLGTDS 229

Query: 67  VIRVKTNERGQMICSFLEQTIQTSLAEKKIPLFVNATAGTTVLGAFDPLDEIATVCEKYD 126
           V  VK +ERG+M+   LE+ I  + AE  +P  V+AT+GTTVLGAFDPL+ IA VC+++ 
Sbjct: 230 VRVVKADERGKMVPEDLERQIGMAEAEGAVPFLVSATSGTTVLGAFDPLEAIADVCQRHG 289

Query: 127 LWMHVDACWGGSLIFSEKYSFVLKGINRANSVSWNPHKMLGAPLQCSILLIKEKG-LLHQ 185
           LW+HVDA WGGS++ S+ +  +L GI RA+SV+WNPHK+L A LQCS LL+++   LL +
Sbjct: 290 LWLHVDAAWGGSVLLSQTHRHLLDGIQRADSVAWNPHKLLAAGLQCSALLLQDTSNLLKR 349

Query: 186 ANATAATYLFQQDKFYDVSFDTGDKSVQCGRKVDAFKLWLMWKARGNLGFRHFVDNAVDC 245
            + + A+YLFQQDKFYDV+ DTGDK VQCGR+VD  KLWLMWKA+G+ G    +D A   
Sbjct: 350 CHGSQASYLFQQDKFYDVALDTGDKVVQCGRRVDCLKLWLMWKAQGDQGLERRIDQAFVL 409

Query: 246 SR 247
           +R
Sbjct: 410 AR 411

>2jis_A Cysteine sulfinic acid decarboxylase; pyridoxal phosphate, alternative splicing, pyridoxal phosphate (PLP), structural genomics consortium (SGC); HET: PLP; 1.6A {Homo sapiens} Length = 515

 Score =  186 bits (473), Expect = 2e-53
 Identities = 88/184 (47%), Positives = 122/184 (66%), Gaps = 4/184 (2%)

Query: 253 STLLCFDLQGLLHQANATAATYLFQQDKFYDVSFDTGDKSVQCGRKVDAFKLWLMWKARG 312
           S LL  D   LL + + + A+YLFQQDKFYDV+ DTGDK VQCGR+VD  KLWLMWKA+G
Sbjct: 336 SALLLQDTSNLLKRCHGSQASYLFQQDKFYDVALDTGDKVVQCGRRVDCLKLWLMWKAQG 395

Query: 313 NLGFRHFVDNAVDCSRYFLSQISQRPGFRLVIPEFQCTNICFWFIPVSLRDKVEDETWWS 372
           + G    +D A   +RY + ++ +R GF LV+   +  N+CFWF+P SLR K E   +  
Sbjct: 396 DQGLERRIDQAFVLARYLVEEMKKREGFELVMEP-EFVNVCFWFVPPSLRGKQESPDYHE 454

Query: 373 TLSKVAPRIKEKLVLGGTLMIGYQPLQHRNLHNFFRLVTTCHPASSRQDMDYAIDQIELR 432
            LSKVAP +KE++V  G++MIGYQP   R   NFFR+V   + A +  DMD+ ++++E  
Sbjct: 455 RLSKVAPVLKERMVKEGSMMIGYQPHGTRG--NFFRVV-VANSALTCADMDFLLNELERL 511

Query: 433 GAEV 436
           G ++
Sbjct: 512 GQDL 515

>2qma_A Diaminobutyrate-pyruvate transaminase and L-2,4- diaminobutyrate decarboxylase; structural genomics, APC91511.1, glutamate decarboxylase; HET: MSE; 1.81A {Vibrio parahaemolyticus} Length = 497

 Score =  317 bits (815), Expect = e-104
 Identities = 76/247 (30%), Positives = 123/247 (49%), Gaps = 11/247 (4%)

Query: 7   LLPGGSISNMYSICLARYRLDPDTKRKGLSH------LPPLCMFTSEDSHYSMLKAAHWL 60
              GG+ SN   + LAR  +        +           L +  S+ SH+++ K+A W+
Sbjct: 163 FTSGGTQSNQMGLMLARDWIADKLSGHSIQKLGLPDYADKLRIVCSKKSHFTVQKSASWM 222

Query: 61  GIGMDNVIRVKTNERGQMICSFLEQTIQTSLAEKKIPLFVNATAGTTVLGAFDPLDEIAT 120
           G+G   V+ V  N  G M  + L++ I  + AE  IP  +  TAGTT  GA D LD IA 
Sbjct: 223 GLGEKAVMTVDANADGTMDITKLDEVIAQAKAEGLIPFAIVGTAGTTDHGAIDDLDFIAD 282

Query: 121 VCEKYDLWMHVDACWGGSLIFSEKYSFVLKGINRANSVSWNPHKMLGAPLQCSILLIKEK 180
           +  K+D+WMHVD  +GG+LI S  +   LKG+ RA+S+S + HK+    + C  LL+ +K
Sbjct: 283 MAVKHDMWMHVDGAYGGALILSS-HKSRLKGVERAHSISVDFHKLFYQTISCGALLVNDK 341

Query: 181 GLLHQANATAATYLFQQDKFYDVSFDTGDKSVQCGRKVDAFKLWLMWKARGNLGFRHFVD 240
               +     A YL   ++ +D   +  DKS+   ++ DA K+++  +  G        D
Sbjct: 342 SNF-KFLLHHADYL---NREHDELPNLVDKSIATTKRFDALKVFMTMQNVGPKALGDMYD 397

Query: 241 NAVDCSR 247
           + +  + 
Sbjct: 398 HLLAQTL 404

>2qma_A Diaminobutyrate-pyruvate transaminase and L-2,4- diaminobutyrate decarboxylase; structural genomics, APC91511.1, glutamate decarboxylase; HET: MSE; 1.81A {Vibrio parahaemolyticus} Length = 497

 Score =  144 bits (365), Expect = 3e-38
 Identities = 24/173 (13%), Positives = 61/173 (35%), Gaps = 19/173 (10%)

Query: 264 LHQANATAATYLFQQDKFYDVSFDTGDKSVQCGRKVDAFKLWLMWKARGNLGFRHFVDNA 323
             +     A YL   ++ +D   +  DKS+   ++ DA K+++  +  G        D+ 
Sbjct: 343 NFKFLLHHADYL---NREHDELPNLVDKSIATTKRFDALKVFMTMQNVGPKALGDMYDHL 399

Query: 324 VDCSRYFLSQISQRPGFRLVIPEFQCTNICFWFIPVSLRDKVEDETWWSTLSKVAPRIKE 383
           +  +      I     F L+      + + F                 + L ++   ++ 
Sbjct: 400 LAQTLEVADMIRTNDQFELLAEP-SLSTVLFRATH-----------ETADLDELNKALRL 447

Query: 384 KLVLGGTLMIGYQPLQHRNLHNFFRLVTTCHPASSRQDMDYAIDQIELRGAEV 436
           + +  G  ++G   +  +      +  T  +P  +  D +  + +I +   E+
Sbjct: 448 EALTRGIAVLGETIVDGK---TALK-FTILNPCLTTSDFESLLSKINMLAVEL 496

>4e1o_A HDC, histidine decarboxylase; lyase; HET: PLP PVH; 1.80A {Homo sapiens} Length = 481

 Score =  270 bits (692), Expect = 5e-86
 Identities = 58/246 (23%), Positives = 107/246 (43%), Gaps = 10/246 (4%)

Query: 7   LLPGGSISNMYSICLARYRLDPDTKRKG-----LSHLPPLCMFTSEDSHYSMLKAAHWLG 61
           L    S S + ++  AR     + K         S    L  + S+ +H S+ KA     
Sbjct: 150 LQSTVSESTLIALLAARKNKILEMKTSEPDADESSLNARLVAYASDQAHSSVEKAGLISL 209

Query: 62  IGMDNVIRVKTNERGQMICSFLEQTIQTSLAEKKIPLFVNATAGTTVLGAFDPLDEIATV 121
           +    +  +  ++   +    L++ I+       +P+FV AT GTT + AFD L E+  +
Sbjct: 210 V---KMKFLPVDDNFSLRGEALQKAIEEDKQRGLVPVFVCATLGTTGVCAFDCLSELGPI 266

Query: 122 CEKYDLWMHVDACWGGSLIFSEKYSFVLKGINRANSVSWNPHKMLGAPLQCSILLIKEKG 181
           C +  LW+H+DA + G+     ++   LKGI  A+S ++NP K +     C+   +K+K 
Sbjct: 267 CAREGLWLHIDAAYAGTAFLCPEFRGFLKGIEYADSFTFNPSKWMMVHFDCTGFWVKDKY 326

Query: 182 LLHQANATAATYLFQQDKFYDVSFDTGDKSVQCGRKVDAFKLWLMWKARGNLGFRHFVDN 241
            L Q  +    YL   +      F      +   R+  + KLW + ++ G    +  V +
Sbjct: 327 KLQQTFSVNPIYLRHANSGVATDF--MHWQIPLSRRFRSVKLWFVIRSFGVKNLQAHVRH 384

Query: 242 AVDCSR 247
             + ++
Sbjct: 385 GTEMAK 390

>4e1o_A HDC, histidine decarboxylase; lyase; HET: PLP PVH; 1.80A {Homo sapiens} Length = 481

 Score =  124 bits (312), Expect = 3e-31
 Identities = 25/175 (14%), Positives = 55/175 (31%), Gaps = 22/175 (12%)

Query: 262 GLLHQANATAATYLFQQDKFYDVSFDTGDKSVQCGRKVDAFKLWLMWKARGNLGFRHFVD 321
             L Q  +    YL   +      F      +   R+  + KLW + ++ G    +  V 
Sbjct: 326 YKLQQTFSVNPIYLRHANSGVATDF--MHWQIPLSRRFRSVKLWFVIRSFGVKNLQAHVR 383

Query: 322 NAVDCSRYFLSQISQRPGFRLVIPEFQCTNICFWFIPVSLRDKVEDETWWSTLSKVAPRI 381
           +  + ++YF S +   P F +         + F                    + +   +
Sbjct: 384 HGTEMAKYFESLVRNDPSFEIPAKR-HLGLVVFRLKG---------------PNSLTENV 427

Query: 382 KEKLVLGGTLMIGYQPLQHRNLHNFFRLVTTCHPASSRQDMDYAIDQIELRGAEV 436
            +++   G L +    +Q +      R  T     ++R D+    + I      +
Sbjct: 428 LKEIAKAGRLFLIPATIQDK---LIIRF-TVTSQFTTRDDILRDWNLIRDAATLI 478

>1js3_A DDC;, DOPA decarboxylase; carbidopa, parkinson'S disease, vitamin; HET: PLP 142; 2.25A {Sus scrofa} SCOP: c.67.1.6 PDB: 1js6_A* 3rch_A* 3rbl_A 3rbf_A* Length = 486

 Score =  268 bits (688), Expect = 2e-85
 Identities = 61/247 (24%), Positives = 114/247 (46%), Gaps = 8/247 (3%)

Query: 6   FLLPGGSISNMYSICLARYRLDPDTKRK-----GLSHLPPLCMFTSEDSHYSMLKAAHWL 60
            +    S + + ++  AR ++    +         + L  L  + S+ +H S+ +A    
Sbjct: 143 VIQGSASEATLVALLAARTKVVRRLQAASPGLTQGAVLEKLVAYASDQAHSSVERAGLIG 202

Query: 61  GIGMDNVIRVKTNERGQMICSFLEQTIQTSLAEKKIPLFVNATAGTTVLGAFDPLDEIAT 120
           G+    +  + ++ +  M  S L++ ++   A   IP FV AT GTT   +FD L E+  
Sbjct: 203 GV---KLKAIPSDGKFAMRASALQEALERDKAAGLIPFFVVATLGTTSCCSFDNLLEVGP 259

Query: 121 VCEKYDLWMHVDACWGGSLIFSEKYSFVLKGINRANSVSWNPHKMLGAPLQCSILLIKEK 180
           +C + D+W+HVDA + GS     ++  +L G+  A+S ++NPHK L     CS + +K +
Sbjct: 260 ICHEEDIWLHVDAAYAGSAFICPEFRHLLNGVEFADSFNFNPHKWLLVNFDCSAMWVKRR 319

Query: 181 GLLHQANATAATYLFQQDKFYDVSFDTGDKSVQCGRKVDAFKLWLMWKARGNLGFRHFVD 240
             L  A      YL    +   +  D     +  GR+  + K+W +++  G  G + ++ 
Sbjct: 320 TDLTGAFKLDPVYLKHSHQGSGLITDYRHWQLPLGRRFRSLKMWFVFRMYGVKGLQAYIR 379

Query: 241 NAVDCSR 247
             V  S 
Sbjct: 380 KHVQLSH 386

>1js3_A DDC;, DOPA decarboxylase; carbidopa, parkinson'S disease, vitamin; HET: PLP 142; 2.25A {Sus scrofa} SCOP: c.67.1.6 PDB: 1js6_A* 3rch_A* 3rbl_A 3rbf_A* Length = 486

 Score =  123 bits (310), Expect = 6e-31
 Identities = 28/183 (15%), Positives = 58/183 (31%), Gaps = 20/183 (10%)

Query: 262 GLLHQANATAATYLFQQDKFYDVSFDTGDKSVQCGRKVDAFKLWLMWKARGNLGFRHFVD 321
             L  A      YL    +   +  D     +  GR+  + K+W +++  G  G + ++ 
Sbjct: 320 TDLTGAFKLDPVYLKHSHQGSGLITDYRHWQLPLGRRFRSLKMWFVFRMYGVKGLQAYIR 379

Query: 322 NAVDCSRYFLSQISQRPGFRLVIPEFQCTNICFWFIPVSLRDKVEDETWWSTLSKVAPRI 381
             V  S  F + + Q P F +         +CF        ++                +
Sbjct: 380 KHVQLSHEFEAFVLQDPRFEVCAEV-TLGLVCFRLKGSDGLNE---------------AL 423

Query: 382 KEKLVLGGTLMIGYQPLQHRNLHNFFRLVTTCHPASSRQDMDYAIDQIELRGAEVDLEMQ 441
            E++     + +    L+ +      R    C        +  A + I    AE+    +
Sbjct: 424 LERINSARKIHLVPCRLRGQ---FVLRF-AICSRKVESGHVRLAWEHIRGLAAELLAAEE 479

Query: 442 AEA 444
            +A
Sbjct: 480 GKA 482

>3k40_A Aromatic-L-amino-acid decarboxylase; PLP dependent protein, alpha beta protein, alternative splicing, catecholamine biosynthesis, lyase; HET: LLP; 1.75A {Drosophila melanogaster} Length = 475

 Score =  266 bits (681), Expect = 2e-84
 Identities = 65/248 (26%), Positives = 114/248 (45%), Gaps = 11/248 (4%)

Query: 5   PFLLPGGSISNMYSICLARYRLDPDTKR-----KGLSHLPPLCMFTSEDSHYSMLKAAHW 59
             +    S S + ++  A+ +   + K         + L  L  + S+ +H S+ +A   
Sbjct: 142 GVIQGTASESTLVALLGAKAKKLKEVKELHPEWDEHTILGKLVGYCSDQAHSSVERAGLL 201

Query: 60  LGIGMDNVIRVKTNERGQMICSFLEQTIQTSLAEKKIPLFVNATAGTTVLGAFDPLDEIA 119
            G+ + +V     +E  +M  + LE+ I+  +AE  IP +   T GTT   AFD LDE  
Sbjct: 202 GGVKLRSV----QSENHRMRGAALEKAIEQDVAEGLIPFYAVVTLGTTNSCAFDYLDECG 257

Query: 120 TVCEKYDLWMHVDACWGGSLIFSEKYSFVLKGINRANSVSWNPHKMLGAPLQCSILLIKE 179
            V  K++LW+HVDA + GS     +Y  ++KGI  A+S ++NPHK +     CS + +K+
Sbjct: 258 PVGNKHNLWIHVDAAYAGSAFICPEYRHLMKGIESADSFNFNPHKWMLVNFDCSAMWLKD 317

Query: 180 KGLLHQANATAATYLFQQDKFYDVSFDTGDKSVQCGRKVDAFKLWLMWKARGNLGFRHFV 239
              +  A      YL  +      + D     +  GR+  A KLW + +  G    +  +
Sbjct: 318 PSWVVNAFNVDPLYL--KHDMQGSAPDYRHWQIPLGRRFRALKLWFVLRLYGVENLQAHI 375

Query: 240 DNAVDCSR 247
               + ++
Sbjct: 376 RRHCNFAK 383

>3k40_A Aromatic-L-amino-acid decarboxylase; PLP dependent protein, alpha beta protein, alternative splicing, catecholamine biosynthesis, lyase; HET: LLP; 1.75A {Drosophila melanogaster} Length = 475

 Score =  121 bits (306), Expect = 2e-30
 Identities = 25/175 (14%), Positives = 57/175 (32%), Gaps = 22/175 (12%)

Query: 262 GLLHQANATAATYLFQQDKFYDVSFDTGDKSVQCGRKVDAFKLWLMWKARGNLGFRHFVD 321
             +  A      YL  +      + D     +  GR+  A KLW + +  G    +  + 
Sbjct: 319 SWVVNAFNVDPLYL--KHDMQGSAPDYRHWQIPLGRRFRALKLWFVLRLYGVENLQAHIR 376

Query: 322 NAVDCSRYFLSQISQRPGFRLVIPEFQCTNICFWFIPVSLRDKVEDETWWSTLSKVAPRI 381
              + ++ F         F L         +CF     + R++                +
Sbjct: 377 RHCNFAKQFGDLCVADSRFELAAEI-NMGLVCFRLKGSNERNE---------------AL 420

Query: 382 KEKLVLGGTLMIGYQPLQHRNLHNFFRLVTTCHPASSRQDMDYAIDQIELRGAEV 436
            +++   G + +    ++      F R+   C   +  +DM+Y+  ++     E+
Sbjct: 421 LKRINGRGHIHLVPAKIKDV---YFLRM-AICSRFTQSEDMEYSWKEVSAAADEM 471

>2z67_A O-phosphoseryl-tRNA(SEC) selenium transferase; selenocysteine biosynthesis, seven-stranded BETE-strand, PYR 5'-phosphate; HET: PLP; 2.50A {Methanococcus maripaludis} SCOP: c.67.1.9 Length = 456

 Score =  140 bits (355), Expect = 2e-37
 Identities = 41/244 (16%), Positives = 81/244 (33%), Gaps = 44/244 (18%)

Query: 8   LPGGSISNMYSICLARYRLDPDTKRKGLSHLPPLCMFTSEDSHYSMLKAAHWLGIGMDNV 67
           +  G   ++   CL+  R    +            +     SH S +KA  ++G+ M  V
Sbjct: 157 ISTGMSISL---CLSAARKKYGSNV----------VIYPYASHKSPIKAVSFVGMNMRLV 203

Query: 68  IRVKTNERGQMICSFLEQTIQTSLAEKKIPLFVNATAGTTVLGAFDPLDEIATVCEKYDL 127
             V   +R  +    +E  I+  +     P  V +T         D + EIA +CE YD+
Sbjct: 204 ETVLDGDRVYVPVEDIENAIKKEIELGNRPC-VLSTLTFFPPRNSDDIVEIAKICENYDI 262

Query: 128 WMHVDACWGGSLIFSEKYSFVLKGIN--RANSVSWNPHKMLGAPLQCSILLIKEKGLLHQ 185
              ++  +    I +  Y   LK     R ++V  +  K L  P+   ++   +   + +
Sbjct: 263 PHIINGAYA---IQNNYYLEKLKKAFKYRVDAVVSSSDKNLLTPIGGGLVYSTDAEFIKE 319

Query: 186 ANATAATYLFQQDKFYDVSFDTGDKSVQCGRK--VDAFKLWLMWKARGNLGFRHFVDNAV 243
            + +                         GR          +   + G+  +   V N  
Sbjct: 320 ISLSYP-----------------------GRASATPVVNTLVSLLSMGSKNYLELVKNQK 356

Query: 244 DCSR 247
           +  +
Sbjct: 357 NSKK 360

>3f9t_A TDC, L-tyrosine decarboxylase MFNA; NP_247014.1, L-tyrosine decarboxylase MFNA (EC 4.1.1.25), ST genomics; HET: PLP; 2.11A {Methanocaldococcus jannaschii} Length = 397

 Score =  139 bits (352), Expect = 3e-37
 Identities = 44/192 (22%), Positives = 88/192 (45%), Gaps = 17/192 (8%)

Query: 10  GGSISNMYSICLARYRLDPDTKRKGLSHLPPLCMFTSEDSHYSMLKAAHWLGIGMDNVIR 69
           GG+ +N+ ++   +  +  + +RKGLS      +     +H+S  K    + +     I 
Sbjct: 94  GGTEANLMALRCIK-NIWREKRRKGLSKNEHPKIIVPITAHFSFEKGREMMDLE---YIY 149

Query: 70  VKTNERGQMICSFLEQTIQTSLAEKKIPLFVNATAGTTVLGAFDPLDEIATVCEKYDLWM 129
               E   +   F++  ++    +  +   +   AGTT LG  D ++E++ + ++ ++++
Sbjct: 150 APIKEDYTIDEKFVKDAVE----DYDVDGII-GIAGTTELGTIDNIEELSKIAKENNIYI 204

Query: 130 HVDACWGGSLIFSEKYSFVLKGINR-------ANSVSWNPHKMLGAPLQCSILLIKEKGL 182
           HVDA +GG +I      +  KG+N         +S++ +PHKM   P+    +L K+ G 
Sbjct: 205 HVDAAFGGLVIPFLDDKYKKKGVNYKFDFSLGVDSITIDPHKMGHCPIPSGGILFKDIGY 264

Query: 183 LHQANATAATYL 194
                   A YL
Sbjct: 265 KRYL-DVDAPYL 275

>3mad_A Sphingosine-1-phosphate lyase; carboxy-lyase activity, pyridoxal phosphate; HET: LLP; 2.00A {Symbiobacterium thermophilum} PDB: 3maf_A* 3mau_A* 3mbb_A* Length = 514

 Score =  110 bits (276), Expect = 2e-26
 Identities = 48/244 (19%), Positives = 90/244 (36%), Gaps = 30/244 (12%)

Query: 10  GGSISNMYSICLARYRLDPDTKRKGLSHLPPLCMFTSEDSHYSMLKAAHWLGIGMDNVIR 69
           GG+ S +  + +  YR D     KG++            +H +  KAA + GI    ++R
Sbjct: 168 GGTESLL--LAMKTYR-DWARATKGITAPE---AVVPVSAHAAFDKAAQYFGI---KLVR 218

Query: 70  VKTNERGQMICSFLEQTIQTSLAEKKIPLFVNATAGTTVLGAFDPLDEIATVCEKYDLWM 129
              +   +   + + + I          + V  +A     G  DP+ EIA +  ++ +  
Sbjct: 219 TPLDADYRADVAAMREAI------TPNTVVVAGSAPGYPHGVVDPIPEIAALAAEHGIGC 272

Query: 130 HVDACWGGSLI-FSEKYSFVLK----GINRANSVSWNPHKMLGAPLQCSILLIKEKGLLH 184
           HVDAC GG ++ ++E+  + +      +    SVS + HK        S++L +   LLH
Sbjct: 273 HVDACLGGFILPWAERLGYPVPPFDFRLEGVTSVSADTHKYGYGAKGTSVILYRRPDLLH 332

Query: 185 QANATAATYLFQQDKFYDVSFDTGDKSVQCGR-KVDAFKLWLMWKARGNLGFRHFVDNAV 243
                AA +                 +    R    +   W    + G  G+       +
Sbjct: 333 YQYFIAADWP---------GGLYFSPTFAGSRPGALSATAWAAMLSLGEEGYLDATRRIL 383

Query: 244 DCSR 247
             + 
Sbjct: 384 QAAD 387

>3mc6_A Sphingosine-1-phosphate lyase; carboxy-lyase activity, pyridoxyl phosphate; HET: LLP; 3.15A {Saccharomyces cerevisiae} Length = 497

 Score =  100 bits (250), Expect = 5e-23
 Identities = 35/192 (18%), Positives = 76/192 (39%), Gaps = 22/192 (11%)

Query: 10  GGSISNMYSICLARYRLDPDTKRKGLSHLPPLCMFTSEDSHYSMLKAAHWLGIGMDNVIR 69
           GG+ S + +   A+         +G++      +     +H    KAA++ G+ +     
Sbjct: 134 GGTESLLLACLSAKMYA---LHHRGITEPE---IIAPVTAHAGFDKAAYYFGMKL---RH 184

Query: 70  VKTNE-RGQMICSFLEQTIQTSLAEKKIPLFVNATAGTTVLGAFDPLDEIATVCEKYDLW 128
           V+ +    Q+    +++ I  +       + +  +A     G  D ++ +  + +KY L 
Sbjct: 185 VELDPTTYQVDLGKVKKFINKN------TVLLVGSAPNFPHGIADDIEGLGKIAQKYKLP 238

Query: 129 MHVDACWGGSLI-FSEKYSFVL-----KGINRANSVSWNPHKMLGAPLQCSILLIKEKGL 182
           +HVD+C G  ++ F EK  +         +    S+S + HK   AP   S+++ +   L
Sbjct: 239 LHVDSCLGSFIVSFMEKAGYKNLPLLDFRVPGVTSISCDTHKYGFAPKGSSVIMYRNSDL 298

Query: 183 LHQANATAATYL 194
                     + 
Sbjct: 299 RMHQYYVNPAWT 310

>3hbx_A GAD 1, glutamate decarboxylase 1; calmodulin-binding, lyase, pyridoxal phosphate; HET: LLP; 2.67A {Arabidopsis thaliana} Length = 502

 Score =  100 bits (249), Expect = 6e-23
 Identities = 35/196 (17%), Positives = 68/196 (34%), Gaps = 24/196 (12%)

Query: 10  GGSISNMYSICLARYRLDPDTKRKGLSHLPPLCMFTSEDSHYSMLKAAHWLGIGMDNVIR 69
           G S + M +    + +     K +G     P  + T  +      K A +  +    +  
Sbjct: 125 GSSEAIMLAGLAFKRKWQNKRKAEGKPVDKP-NIVTGANVQVCWEKFARYFEV---ELKE 180

Query: 70  VKTNE-RGQMICSFLEQTIQTSLAEKKIPLFVNATAGTTVLGAFDPLDEIATVCEKY--- 125
           VK +E    M        +       +  + V A  G+T+ G F+ +  +  +  +    
Sbjct: 181 VKLSEGYYVMDPQQAVDMV------DENTICVAAILGSTLNGEFEDVKLLNDLLVEKNKE 234

Query: 126 ---DLWMHVDACWGGSLI----FSEKYSFVLKGINRANSVSWNPHKMLGAPLQCSILLIK 178
              D  +HVDA  GG +        ++ F L  +    S++ + HK          ++ +
Sbjct: 235 TGWDTPIHVDAASGGFIAPFLYPELEWDFRLPLV---KSINVSGHKYGLVYAGIGWVIWR 291

Query: 179 EKGLLHQANATAATYL 194
            K  L +       YL
Sbjct: 292 NKEDLPEELIFHINYL 307

>2dgk_A GAD-beta, GADB, glutamate decarboxylase beta; gadbd1-14, autoinhibition, substituted aldamine, lyase; HET: PLP; 1.90A {Escherichia coli} PDB: 2dgm_A* 1pmo_A* 2dgl_A* 1pmm_A* 3fz6_A* 3fz7_A 3fz8_A* 1xey_A* Length = 452

 Score = 99.3 bits (247), Expect = 9e-23
 Identities = 37/193 (19%), Positives = 64/193 (33%), Gaps = 19/193 (9%)

Query: 10  GGSISNMYSICLARYRLDPDTKRKGLSHLPPLCMFTSEDSHYSMLKAAHWLGIGMDNVIR 69
           G S + M      ++R     +  G     P              K A +  +    +  
Sbjct: 111 GSSEACMLGGMAMKWRWRKRMEAAGKPTDKP--NLVCGPVQICWHKFARYWDV---ELRE 165

Query: 70  VKTNE-RGQMICSFLEQTIQTSLAEKKIPLFVNATAGTTVLGAFDPLDEIATVCEK---- 124
           +     +  M    + +         +  + V  T G T  G ++    +    +K    
Sbjct: 166 IPMRPGQLFMDPKRMIEAC------DENTIGVVPTFGVTYTGNYEFPQPLHDALDKFQAD 219

Query: 125 --YDLWMHVDACWGGSLI-FSEKYSFVLKGINRANSVSWNPHKMLGAPLQCSILLIKEKG 181
              D+ MH+DA  GG L  F          + R  S+S + HK   APL C  ++ +++ 
Sbjct: 220 TGIDIDMHIDAASGGFLAPFVAPDIVWDFRLPRVKSISASGHKFGLAPLGCGWVIWRDEE 279

Query: 182 LLHQANATAATYL 194
            L Q       YL
Sbjct: 280 ALPQELVFNVDYL 292

>3bc8_A O-phosphoseryl-tRNA(SEC) selenium transferase; disorder-order transition, phosphate-loop, pyridoxal phospha selenocysteine synthase (SECS, sepsecs); HET: LLP; 1.65A {Mus musculus} SCOP: c.67.1.9 PDB: 3bca_A* 3bcb_A* Length = 450

 Score = 62.7 bits (152), Expect = 7e-11
 Identities = 25/147 (17%), Positives = 52/147 (35%), Gaps = 8/147 (5%)

Query: 46  SEDSHYSMLKAAHWLGIGMDNVIRVKTNERGQMICSFLEQTIQTSLAEKKIPLFVNATAG 105
                 S  K+    G     +  V   +  +     +E  IQ    E    L +++T  
Sbjct: 150 PRIDQKSCFKSMVTAGFEPVVIENVLEGDELRTDLKAVEAKIQELGPEHI--LCLHSTTA 207

Query: 106 TTVLGAFDPLDEIATVCEKYDLWMHVDACWGGSLIFSEKYSFVLKGIN---RANSVSWNP 162
                  D L+E+A +C  YD+   V+  +G   + S K   +++      R ++   + 
Sbjct: 208 CFAPRVPDRLEELAVICANYDIPHVVNNAYG---LQSSKCMHLIQQGARVGRIDAFVQSL 264

Query: 163 HKMLGAPLQCSILLIKEKGLLHQANAT 189
            K    P+  +I+    +  +   +  
Sbjct: 265 DKNFMVPVGGAIIAGFNEPFIQDISKM 291

>3hl2_A O-phosphoseryl-tRNA(SEC) selenium transferase; selenocysteine, sepsecs, protein-RNA complex, alternative splicing, cytoplasm, protein biosynthesis, pyridoxal phosphate, selenium; HET: PLR SEP; 2.81A {Homo sapiens} Length = 501

 Score = 59.7 bits (144), Expect = 7e-10
 Identities = 25/184 (13%), Positives = 60/184 (32%), Gaps = 12/184 (6%)

Query: 6   FLLPGGSISNMYSICLARYRLDPDTKRKGLSHLPPLCMFTSEDSHYSMLKAAHWLGIGMD 65
           F++P  +  ++ ++C    R      +          +        S  K+    G    
Sbjct: 138 FVVPMATGMSL-TLCFLTLRHKRPKAKY---------IIWPRIDQKSCFKSMITAGFEPV 187

Query: 66  NVIRVKTNERGQMICSFLEQTIQTSLAEKKIPLFVNATAGTTVLGAFDPLDEIATVCEKY 125
            +  V   +  +     +E  +Q    +    L +++T         D L+E+A +C  Y
Sbjct: 188 VIENVLEGDELRTDLKAVEAKVQELGPDCI--LCIHSTTSCFAPRVPDRLEELAVICANY 245

Query: 126 DLWMHVDACWGGSLIFSEKYSFVLKGINRANSVSWNPHKMLGAPLQCSILLIKEKGLLHQ 185
           D+   V+  +G               + R ++   +  K    P+  +I+       + +
Sbjct: 246 DIPHIVNNAYGVQSSKCMHLIQQGARVGRIDAFVQSLDKNFMVPVGGAIIAGFNDSFIQE 305

Query: 186 ANAT 189
            +  
Sbjct: 306 ISKM 309

>2x3l_A ORN/Lys/Arg decarboxylase family protein; lyase; HET: LLP; 2.00A {Staphylococcus aureus} Length = 446

 Score = 42.1 bits (99), Expect = 3e-04
 Identities = 11/73 (15%), Positives = 24/73 (32%), Gaps = 6/73 (8%)

Query: 115 LDEIATVCEKYDLWMHVDACWGGSLIFSEKY--SFVLKGINRANSVSWNPHKMLGAPLQC 172
           ++E+     + ++ + +D   G           +   +      S     HK L A    
Sbjct: 164 VEEVIKSLHQLNIPVLIDEAHGAHFGLQGFPDSTLNYQADYVVQSF----HKTLPALTMG 219

Query: 173 SILLIKEKGLLHQ 185
           S+L I +     +
Sbjct: 220 SVLYIHKNAPYRE 232

>2vyc_A Biodegradative arginine decarboxylase; pyridoxal phosphate, PLP-dependent E lyase, acid resistance; HET: LLP; 2.4A {Escherichia coli} Length = 755

 Score = 41.6 bits (97), Expect = 4e-04
 Identities = 16/71 (22%), Positives = 26/71 (36%), Gaps = 7/71 (9%)

Query: 115 LDEIATVCEKYDLWMHVDACWGGSLIFSEKY---SFVLKGINRANS----VSWNPHKMLG 167
             E   + EK    +H D  W G   F+  Y     +       N      + + HK+L 
Sbjct: 330 AKEAQDLLEKTSDRLHFDEAWYGYARFNPIYADHYAMRGEPGDHNGPTVFATHSTHKLLN 389

Query: 168 APLQCSILLIK 178
           A  Q S + ++
Sbjct: 390 ALSQASYIHVR 400

>3n75_A LDC, lysine decarboxylase, inducible; pyridoxal-5'-phosphate dependent decarboxylase, acid stress stringent response; HET: LLP G4P P6G; 2.00A {Escherichia coli} PDB: 3q16_A* Length = 715

 Score = 41.6 bits (97), Expect = 4e-04
 Identities = 23/108 (21%), Positives = 37/108 (34%), Gaps = 11/108 (10%)

Query: 81  SFLEQTIQTSLAEK---KIPLFVNATAGTTVLGAFDPLDEIATVCEKYDLWMHVDACWGG 137
            F   TI   + E      P+    T  T     ++  D I    +   +  H D+ W  
Sbjct: 279 EFQHATIAKRVKETPNATWPVHAVITNSTYDGLLYN-TDFIKKTLDVKSI--HFDSAWVP 335

Query: 138 SLIFSEKY--SFVLKGINRANS---VSWNPHKMLGAPLQCSILLIKEK 180
              FS  Y     + G          + + HK+L A  Q S++ +K  
Sbjct: 336 YTNFSPIYEGKCGMSGGRVEGKVIYETQSTHKLLAAFSQASMIHVKGD 383

>1c4k_A Protein (ornithine decarboxylase); lyase; HET: PLP GTP; 2.70A {Lactobacillus SP} SCOP: c.23.1.4 c.67.1.5 d.125.1.1 PDB: 1ord_A* Length = 730

 Score = 41.6 bits (97), Expect = 5e-04
 Identities = 15/84 (17%), Positives = 24/84 (28%), Gaps = 7/84 (8%)

Query: 110 GAFDPLDEIATVCEKYDLWMHVDACWGGSLIFSEKY--SFVLKGINR-----ANSVSWNP 162
           G      E+         ++  D+ W G   F      S  L   +         V  + 
Sbjct: 294 GTIYNAHEVVKRIGHLCDYIEFDSAWVGYEQFIPMMRNSSPLLIDDLGPEDPGIIVVQSV 353

Query: 163 HKMLGAPLQCSILLIKEKGLLHQA 186
           HK      Q S +  K+  +  Q 
Sbjct: 354 HKQQAGFSQTSQIHKKDSHIKGQL 377

>2e7j_A SEP-tRNA:Cys-tRNA synthase; seven-stranded BETE-strand, lyase, structural genomics; HET: PLP; 2.40A {Archaeoglobus fulgidus} SCOP: c.67.1.9 PDB: 2e7i_A* Length = 371

 Score = 40.9 bits (96), Expect = 6e-04
 Identities = 28/143 (19%), Positives = 50/143 (34%), Gaps = 22/143 (15%)

Query: 45  TSEDSHYSMLKAAHWLGIGMDNVIRVKTNERGQMICSFLEQTIQTSLAEKKIPLFVNATA 104
             E+ HYS   AA   G+ +  ++         +      QTI     ++   +    T 
Sbjct: 98  MDENCHYSSYVAAERAGLNIA-LVPKTDYPDYAITPENFAQTI-EETKKRGEVVLALITY 155

Query: 105 GTTVLGAFDPLDEIATVCEKYDLWMHVDACWG-GSLIFSEK------YSFVLKGINRANS 157
                G    + +IA VC +YD+ + V+  +  G +  S K                  S
Sbjct: 156 PDGNYGNLPDVKKIAKVCSEYDVPLLVNGAYAIGRMPVSLKEIGADFIVG---------S 206

Query: 158 VSWNPHKMLGAPLQCSILLIKEK 180
                HK + A     ++ +KE+
Sbjct: 207 G----HKSMAASGPIGVMGMKEE 225

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	448
3vp6_A	511	Glutamate decarboxylase 1; catalytic loop SWAP, ly	100.0
4e1o_A	481	HDC, histidine decarboxylase; lyase; HET: PLP PVH;	100.0
3k40_A	475	Aromatic-L-amino-acid decarboxylase; PLP dependent	100.0
2okj_A	504	Glutamate decarboxylase 1; PLP-dependent decarboxy	100.0
2jis_A	515	Cysteine sulfinic acid decarboxylase; pyridoxal ph	100.0
1js3_A	486	DDC;, DOPA decarboxylase; carbidopa, parkinson'S d	100.0
2qma_A	497	Diaminobutyrate-pyruvate transaminase and L-2,4- d	100.0
2dgk_A	452	GAD-beta, GADB, glutamate decarboxylase beta; gadb	100.0
3hbx_A	502	GAD 1, glutamate decarboxylase 1; calmodulin-bindi	100.0
2z67_A	456	O-phosphoseryl-tRNA(SEC) selenium transferase; sel	99.96
3mad_A	514	Sphingosine-1-phosphate lyase; carboxy-lyase activ	99.96
3mc6_A	497	Sphingosine-1-phosphate lyase; carboxy-lyase activ	99.96
3f9t_A	397	TDC, L-tyrosine decarboxylase MFNA; NP_247014.1, L	99.96
3bc8_A	450	O-phosphoseryl-tRNA(SEC) selenium transferase; dis	99.95
4hvk_A	382	Probable cysteine desulfurase 2; transferase and I	99.95
3nnk_A	411	Ureidoglycine-glyoxylate aminotransferase; PLP-dep	99.95
3e9k_A	465	Kynureninase; kynurenine-L-hydrolase, kynurenine h	99.95
2dr1_A	386	PH1308 protein, 386AA long hypothetical serine ami	99.94
3zrp_A	384	Serine-pyruvate aminotransferase (AGXT); HET: PLP;	99.94
1t3i_A	420	Probable cysteine desulfurase; PLP-binding enzyme,	99.94
4eb5_A	382	Probable cysteine desulfurase 2; scaffold, transfe	99.94
1kmj_A	406	Selenocysteine lyase; persulfide perselenide NIFS	99.94
1m32_A	366	2-aminoethylphosphonate-pyruvate aminotransferase;	99.94
3isl_A	416	Purine catabolism protein PUCG; pyridoxalphosphate	99.94
2z9v_A	392	Aspartate aminotransferase; pyridoxamine, pyruvate	99.94
1iug_A	352	Putative aspartate aminotransferase; wild type, py	99.93
3ffr_A	362	Phosphoserine aminotransferase SERC; structural ge	99.93
3e77_A	377	Phosphoserine aminotransferase; SERC, PLP, structu	99.93
2huf_A	393	Alanine glyoxylate aminotransferase; alpha and bet	99.93
2yrr_A	353	Aminotransferase, class V; structural genomics, NP	99.93
3lvm_A	423	Cysteine desulfurase; structural genomics, montrea	99.93
3f0h_A	376	Aminotransferase; RER070207000802, structural geno	99.93
3kgw_A	393	Alanine-glyoxylate aminotransferase; AAH25799.1, p	99.93
1elu_A	390	L-cysteine/L-cystine C-S lyase; FES cluster biosyn	99.93
3ke3_A	379	Putative serine-pyruvate aminotransferase; structu	99.93
1eg5_A	384	Aminotransferase; PLP-dependent enzymes, iron-sulf	99.93
1vjo_A	393	Alanine--glyoxylate aminotransferase; 17130350, AL	99.93
1wyu_B	474	Glycine dehydrogenase subunit 2 (P-protein); alpha	99.92
2ch1_A	396	3-hydroxykynurenine transaminase; PLP-enzyme, kynu	99.92
2bkw_A	385	Alanine-glyoxylate aminotransferase 1; analine-gly	99.92
3cai_A	406	Possible aminotransferase; RV3778C; 1.80A {Mycobac	99.92
3hl2_A	501	O-phosphoseryl-tRNA(SEC) selenium transferase; sel	99.92
2e7j_A	371	SEP-tRNA:Cys-tRNA synthase; seven-stranded BETE-st	99.92
3m5u_A	361	Phosphoserine aminotransferase; alpha-beta half sa	99.92
3vax_A	400	Putative uncharacterized protein DNDA; desulfurase	99.92
3qm2_A	386	Phosphoserine aminotransferase; structural genomic	99.92
1v72_A	356	Aldolase; PLP-dependent enzyme, lyase; HET: PLP; 2	99.91
3tqx_A	399	2-amino-3-ketobutyrate coenzyme A ligase; energy m	99.91
1qz9_A	416	Kynureninase; kynurenine, tryptophan, PLP, vitamin	99.91
2vyc_A	755	Biodegradative arginine decarboxylase; pyridoxal p	99.91
3dzz_A	391	Putative pyridoxal 5'-phosphate-dependent C-S LYA;	99.91
2w8t_A	427	SPT, serine palmitoyltransferase; HET: LLP; 1.25A	99.9
1svv_A	359	Threonine aldolase; structural genomics, structura	99.9
2fnu_A	375	Aminotransferase; protein-product complex, structu	99.9
1wyu_A	438	Glycine dehydrogenase (decarboxylating) subunit 1;	99.9
1fc4_A	401	2-amino-3-ketobutyrate conenzyme A ligase; 2-amino	99.89
3nra_A	407	Aspartate aminotransferase; structural genomics, j	99.89
3a2b_A	398	Serine palmitoyltransferase; vitamin B6-dependent	99.89
1rv3_A	483	Serine hydroxymethyltransferase, cytosolic; one-ca	99.89
1xi9_A	406	Putative transaminase; alanine aminotransferase, s	99.89
1j32_A	388	Aspartate aminotransferase; HET: PLP; 2.10A {Phorm	99.89
2x3l_A	446	ORN/Lys/Arg decarboxylase family protein; lyase; H	99.89
1c4k_A	730	Protein (ornithine decarboxylase); lyase; HET: PLP	99.89
3a9z_A	432	Selenocysteine lyase; PLP, cytoplasm, pyridoxal ph	99.89
3uwc_A	374	Nucleotide-sugar aminotransferase; lipopolysacchar	99.88
1bs0_A	384	Protein (8-amino-7-oxonanoate synthase); PLP-depen	99.88
2bwn_A	401	5-aminolevulinate synthase; tetrapyrrole biosynthe	99.88
3kki_A	409	CAI-1 autoinducer synthase; quorum sensing, CQSA,	99.88
3ffh_A	363	Histidinol-phosphate aminotransferase; APC88260, l	99.88
3euc_A	367	Histidinol-phosphate aminotransferase 2; YP_297314	99.88
3frk_A	373	QDTB; aminotransferase, sugar-modification, natura	99.88
3l8a_A	421	METC, putative aminotransferase, probable beta-cys	99.87
4dq6_A	391	Putative pyridoxal phosphate-dependent transferas;	99.87
2gb3_A	409	Aspartate aminotransferase; TM1698, structural gen	99.87
3kax_A	383	Aminotransferase, classes I and II; PLP, C-S lyase	99.87
1b9h_A	388	AHBA synthase, protein (3-amino-5-hydroxybenzoic a	99.87
2zc0_A	407	Alanine glyoxylate transaminase; alanine:glyoxylat	99.87
1c7n_A	399	Cystalysin; transferase, aminotransferase, pyridox	99.87
3fdb_A	377	Beta C-S lyase, putative PLP-dependent beta-cystat	99.87
1v2d_A	381	Glutamine aminotransferase; PLP, riken structural	99.87
3piu_A	435	1-aminocyclopropane-1-carboxylate synthase; fruit	99.87
1bw0_A	416	TAT, protein (tyrosine aminotransferase); tyrosine	99.87
3dr4_A	391	Putative perosamine synthetase; deoxysugar, pyrido	99.87
3g0t_A	437	Putative aminotransferase; NP_905498.1, putative a	99.87
2a7v_A	490	Serine hydroxymethyltransferase; structural genomi	99.87
3ly1_A	354	Putative histidinol-phosphate aminotransferase; st	99.86
2c0r_A	362	PSAT, phosphoserine aminotransferase; pyridoxal-5'	99.86
3dyd_A	427	Tyrosine aminotransferase; PLP, SGC, structural ge	99.86
1iay_A	428	ACC synthase 2, 1-aminocyclopropane-1-carboxylate	99.86
2oga_A	399	Transaminase; PLP-dependent enzyme, desosamine, de	99.86
1gd9_A	389	Aspartate aminotransferase; pyridoxal enzyme, temp	99.86
1d2f_A	390	MALY protein; aminotransferase fold, large PLP-bin	99.86
2c81_A	418	Glutamine-2-deoxy-scyllo-inosose aminotransferase;	99.86
2dkj_A	407	Serine hydroxymethyltransferase; PLP dependent enz	99.86
3ftb_A	361	Histidinol-phosphate aminotransferase; structural	99.86
2vi8_A	405	Serine hydroxymethyltransferase; SHMT, E53Q, FTHF,	99.86
3get_A	365	Histidinol-phosphate aminotransferase; NP_281508.1	99.86
3op7_A	375	Aminotransferase class I and II; PLP-dependent tra	99.85
2cb1_A	412	O-acetyl homoserine sulfhydrylase; PLP enzyme, lya	99.85
3h14_A	391	Aminotransferase, classes I and II; YP_167802.1, S	99.85
1jg8_A	347	L-ALLO-threonine aldolase; glycine biosynthesis, p	99.85
1o4s_A	389	Aspartate aminotransferase; TM1255, structural gen	99.85
2z61_A	370	Probable aspartate aminotransferase 2; amino acid	99.85
3cq5_A	369	Histidinol-phosphate aminotransferase; PLP, PMP, a	99.85
2o0r_A	411	RV0858C (N-succinyldiaminopimelate aminotransfera;	99.85
1u08_A	386	Hypothetical aminotransferase YBDL; alpha beta pro	99.85
1o69_A	394	Aminotransferase; structural genomics, unknown fun	99.85
2x5d_A	412	Probable aminotransferase; HET: LLP PLP; 2.25A {Ps	99.85
3ecd_A	425	Serine hydroxymethyltransferase 2; ssgcid, decode,	99.85
2dou_A	376	Probable N-succinyldiaminopimelate aminotransfera;	99.85
2zyj_A	397	Alpha-aminodipate aminotransferase; alpha-aminoadi	99.85
3n0l_A	417	Serine hydroxymethyltransferase; alpha beta class,	99.84
1mdo_A	393	ARNB aminotransferase; type 1 aminotransferase fol	99.84
1vp4_A	425	Aminotransferase, putative; structural genomics, j	99.84
3gbx_A	420	Serine hydroxymethyltransferase; structural genomi	99.84
2o1b_A	404	Aminotransferase, class I; aminotrasferase; HET: P	99.84
1lc5_A	364	COBD, L-threonine-O-3-phosphate decarboxylase; PLP	99.84
3b8x_A	390	WBDK, pyridoxamine 5-phosphate-dependent dehydrase	99.84
1yiz_A	429	Kynurenine aminotransferase; glutamine transaminas	99.84
3aow_A	448	Putative uncharacterized protein PH0207; protein-P	99.83
1fg7_A	356	Histidinol phosphate aminotransferase; HISC, histi	99.83
1w23_A	360	Phosphoserine aminotransferase; pyridoxal-5'-phosp	99.83
1b5p_A	385	Protein (aspartate aminotransferase); pyridoxal en	99.83
2fyf_A	398	PSAT, phosphoserine aminotransferase; PLP-dependen	99.83
1pff_A	331	Methionine gamma-lyase; homocysteine; 2.50A {Trich	99.83
3tcm_A	500	Alanine aminotransferase 2; pyridoxal phosphate (P	99.83
2x5f_A	430	Aspartate_tyrosine_phenylalanine pyridoxal-5' phos	99.83
1cs1_A	386	CGS, protein (cystathionine gamma-synthase); lyase	99.83
3ele_A	398	Amino transferase; RER070207001803, structural gen	99.83
2po3_A	424	4-dehydrase; external aldimine, PLP, aminotransfer	99.82
3nyt_A	367	Aminotransferase WBPE; PLP binding, nucleotide-sug	99.82
3qhx_A	392	Cystathionine gamma-synthase METB (CGS); structura	99.82
1gc0_A	398	Methionine gamma-lyase; pyridoxal-5'-phosphate; HE	99.82
3hdo_A	360	Histidinol-phosphate aminotransferase; PSI-II, his	99.82
2rfv_A	398	Methionine gamma-lyase; pyridoxal-5'-phosphate, PL	99.82
3h7f_A	447	Serine hydroxymethyltransferase 1; cytoplasm, one-	99.81
1vef_A	395	Acetylornithine/acetyl-lysine aminotransferase; PL	99.81
3n75_A	715	LDC, lysine decarboxylase, inducible; pyridoxal-5'	99.81
1ax4_A	467	Tryptophanase; tryptophan biosynthesis, tryptophan	99.81
3ruy_A	392	Ornithine aminotransferase; structural genomics, c	99.8
2r2n_A	425	Kynurenine/alpha-aminoadipate aminotransferase mit	99.8
3bb8_A	437	CDP-4-keto-6-deoxy-D-glucose-3-dehydrase; aspartat	99.8
3fvs_A	422	Kynurenine--oxoglutarate transaminase 1; alpha bet	99.8
3p1t_A	337	Putative histidinol-phosphate aminotransferase; PL	99.8
3ez1_A	423	Aminotransferase MOCR family; YP_604413.1, struct	99.8
1e5e_A	404	MGL, methionine gamma-lyase; methionine biosynthes	99.8
2ctz_A	421	O-acetyl-L-homoserine sulfhydrylase; crystal, O-ac	99.79
3ju7_A	377	Putative PLP-dependent aminotransferase; NP_978343	99.79
2ord_A	397	Acoat, acetylornithine aminotransferase; TM1785, a	99.79
3ezs_A	376	Aminotransferase ASPB; NP_207418.1, structural gen	99.79
3pj0_A	359	LMO0305 protein; structural genomics, joint center	99.79
3lws_A	357	Aromatic amino acid beta-eliminating lyase/threoni	99.79
3ppl_A	427	Aspartate aminotransferase; dimer, PLP-dependent t	99.79
3jtx_A	396	Aminotransferase; NP_283882.1, structural genomics	99.79
2ez2_A	456	Beta-tyrosinase, tyrosine phenol-lyase; PLP-depend	99.78
3e2y_A	410	Kynurenine-oxoglutarate transaminase 3; alpha beta	99.78
2eh6_A	375	Acoat, acetylornithine aminotransferase; ARGD, str	99.78
3qgu_A	449	LL-diaminopimelate aminotransferase; L-lysine, pyr	99.78
3b46_A	447	Aminotransferase BNA3; kynurenine aminotransferase	99.78
3cog_A	403	Cystathionine gamma-lyase; CTH, PLP, propargylglyc	99.77
1qgn_A	445	Protein (cystathionine gamma-synthase); methionine	99.77
2pb2_A	420	Acetylornithine/succinyldiaminopimelate aminotran;	99.77
3ihj_A	498	Alanine aminotransferase 2; helix, structural geno	99.77
1s0a_A	429	Adenosylmethionine-8-amino-7-oxononanoate aminotra	99.77
1sff_A	426	4-aminobutyrate aminotransferase; enzyme complexes	99.77
3fkd_A	350	L-threonine-O-3-phosphate decarboxylase; structura	99.76
3acz_A	389	Methionine gamma-lyase; L-methionine; HET: LLP; 1.	99.76
3ri6_A	430	O-acetylhomoserine sulfhydrylase; PYR 5'-phosphate	99.76
2fq6_A	415	Cystathionine beta-lyase; protein-inhibitor comple	99.76
3rq1_A	418	Aminotransferase class I and II; structural genomi	99.76
4adb_A	406	Succinylornithine transaminase; transferase, PLP e	99.76
3if2_A	444	Aminotransferase; YP_265399.1, structura genomics,	99.75
1n8p_A	393	Cystathionine gamma-lyase; three open alpha/beta s	99.75
2oqx_A	467	Tryptophanase; lyase, pyridoxal phosphate, tryptop	99.75
3d6k_A	422	Putative aminotransferase; APC82464, corynebacteri	99.74
3nx3_A	395	Acoat, acetylornithine aminotransferase; csgid, st	99.74
3ndn_A	414	O-succinylhomoserine sulfhydrylase; seattle struct	99.74
1z7d_A	433	Ornithine aminotransferase; structural genomics co	99.74
3asa_A	400	LL-diaminopimelate aminotransferase; PLP dependent	99.74
3ei9_A	432	LL-diaminopimelate aminotransferase; lysine biosyn	99.74
1ibj_A	464	CBL, cystathionine beta-lyase; PLP-dependent enzym	99.73
3g7q_A	417	Valine-pyruvate aminotransferase; NP_462565.1, str	99.73
3f6t_A	533	Aspartate aminotransferase; YP_194538.1, STRU geno	99.73
2eo5_A	419	419AA long hypothetical aminotransferase; PLP enzy	99.73
2oat_A	439	Ornithine aminotransferase; 5-fluoromethylornithin	99.73
3n5m_A	452	Adenosylmethionine-8-amino-7-oxononanoate aminotr;	99.73
2aeu_A	374	Hypothetical protein MJ0158; selenocysteine syntha	99.73
3t18_A	413	Aminotransferase class I and II; PSI-biology, MCSG	99.72
1ajs_A	412	Aspartate aminotransferase; PIG, in the presence o	99.72
3b1d_A	392	Betac-S lyase; HET: PLP PLS EPE; 1.66A {Streptococ	99.57
3i4j_A	430	Aminotransferase, class III; structural GENOMICS,N	99.72
3dxv_A	439	Alpha-amino-epsilon-caprolactam racemase; fold-TYP	99.72
3fsl_A	397	Aromatic-amino-acid aminotransferase; tyrosine ami	99.72
1uu1_A	335	Histidinol-phosphate aminotransferase; histidine b	99.72
1yaa_A	412	Aspartate aminotransferase; HET: PLP; 2.05A {Sacch	99.71
4f4e_A	420	Aromatic-amino-acid aminotransferase; ssgcid, stru	99.71
3a8u_X	449	Omega-amino acid--pyruvate aminotransferase; large	99.71
2ay1_A	394	Aroat, aromatic amino acid aminotransferase; HET:	99.7
3tfu_A	457	Adenosylmethionine-8-amino-7-oxononanoate aminotr;	99.69
2cjg_A	449	L-lysine-epsilon aminotransferase; internal aldimi	99.69
3gju_A	460	Putative aminotransferase; pyridoxal phosphate, PL	99.69
3meb_A	448	Aspartate aminotransferase; pyridoxal PHOS transfe	99.68
3dod_A	448	Adenosylmethionine-8-amino-7-oxononanoate aminotr;	99.68
1zod_A	433	DGD, 2,2-dialkylglycine decarboxylase; pyridoxal,	99.68
2q7w_A	396	Aspartate aminotransferase; mechanism-based inhibi	99.67
3nmy_A	400	Xometc, cystathionine gamma-lyase-like protein; Cy	99.67
7aat_A	401	Aspartate aminotransferase; transferase(aminotrans	99.67
4a6r_A	459	Omega transaminase; transferase, PLP-binding enzym	99.66
3l44_A	434	Glutamate-1-semialdehyde 2,1-aminomutase 1; alpha	99.66
3hmu_A	472	Aminotransferase, class III; structural genomics,	99.66
3k28_A	429	Glutamate-1-semialdehyde 2,1-aminomutase 2; biosyn	99.65
1ohv_A	472	4-aminobutyrate aminotransferase; PLP-dependent en	99.65
3jzl_A	409	Putative cystathionine beta-lyase involved in ALU	99.65
3oks_A	451	4-aminobutyrate transaminase; ssgcid, transferase,	99.64
4ffc_A	453	4-aminobutyrate aminotransferase (GABT); structura	99.64
3i5t_A	476	Aminotransferase; pyridoxal 5'-phosphate, PSI-2, N	99.63
3i16_A	427	Aluminum resistance protein; YP_878183.1, carbon-s	99.63
4eu1_A	409	Mitochondrial aspartate aminotransferase; ssgcid,	99.62
4e77_A	429	Glutamate-1-semialdehyde 2,1-aminomutase; structur	99.61
3fq8_A	427	Glutamate-1-semialdehyde 2,1-aminomutase; drug res	99.6
3hvy_A	427	Cystathionine beta-lyase family protein, YNBB B.S	99.6
2zy4_A	546	L-aspartate beta-decarboxylase; pyridoxal 5'-phosp	99.59
2epj_A	434	Glutamate-1-semialdehyde 2,1-aminomutase; PLP enzy	99.58
3bwn_A	391	AT1G70560, L-tryptophan aminotransferase; auxin sy	99.58
2cy8_A	453	D-phgat, D-phenylglycine aminotransferase; structu	99.56
3ht4_A	431	Aluminum resistance protein; lyase, putative cysta	99.55
3ou5_A	490	Serine hydroxymethyltransferase, mitochondrial; st	99.52
2e7u_A	424	Glutamate-1-semialdehyde 2,1-aminomutase; PLP enzy	99.49
4ao9_A	454	Beta-phenylalanine aminotransferase; HET: PLP; 1.5	99.44
2hox_A	427	ALLIIN lyase 1; cysteine sulphoxide lyase, ALLIINA	99.43
3k7y_A	405	Aspartate aminotransferase; aminotrans pyridoxal p	99.41
4atq_A	456	4-aminobutyrate transaminase; transferase; HET: PL	99.35
4h51_A	420	Aspartate aminotransferase; ssgcid, structural gen	99.29
2yky_A	465	Beta-transaminase; transferase; HET: PLP SFE; 1.69	98.89
4e3q_A	473	Pyruvate transaminase; aminotransferase, transfera	99.23
4a0g_A	831	Adenosylmethionine-8-amino-7-oxononanoate aminotra	99.03

>3vp6_A Glutamate decarboxylase 1; catalytic loop SWAP, lyase; HET: LLP HLD; 2.10A {Homo sapiens} PDB: 2okj_A* 2okk_A*

Probab=100.00  E-value=2.7e-45  Score=385.66  Aligned_cols=350  Identities=52%  Similarity=0.939  Sum_probs=293.8

Q ss_pred             ccEEEeCcHHHHHHHHHHHHHHhcCCcccccCCCCCCCeEEEecCCCchHHHHHHHHhCCCCCcEEEEecCCCCCcCHHH
Q psy14299          3 LKPFLLPGGSISNMYSICLARYRLDPDTKRKGLSHLPPLCMFTSEDSHYSMLKAAHWLGIGMDNVIRVKTNERGQMICSF   82 (448)
Q Consensus         3 ~~g~~t~ggT~an~~al~~a~~~~~~~~~~~G~~~~~~~~Vl~~~~~H~s~~~~~~~~g~~~~~v~~v~~~~~g~id~e~   82 (448)
                      .+++||+|||+||+.++.+++.+..++.++.|+...++++|+++..+|+|+.++++++|++..+++.+|+++++.+|+++
T Consensus       155 ~~~~~t~ggt~a~~~al~~a~~~~~~~~~~~G~~~~~~~~v~~s~~~H~s~~~~~~~~g~g~~~~~~v~~d~~~~~d~~~  234 (511)
T 3vp6_A          155 GDGIFSPGGAISNMYSIMAARYKYFPEVKTKGMAAVPKLVLFTSEQSHYSIKKAGAALGFGTDNVILIKCNERGKIIPAD  234 (511)
T ss_dssp             CEEEEESSHHHHHHHHHHHHHHHHCTHHHHHCGGGSCCEEEEEETTSCTHHHHHHHHTTSCGGGEEEECBCTTSCBCHHH
T ss_pred             CceEECCchHHHHHHHHHHHHHHhhhhhhhcCcccCCCeEEEECCCchHHHHHHHHHcCCCCCcEEEeecCCCCccCHHH
Confidence            47899999999999999999987766767777765578899999999999999999999877679999999999999999


Q ss_pred             HHHHHHHhhhcCCCcEEEEEeccCCccccccCHHHHHHHHHHcCCEEEEecccccccccccchhhhhcCCCCccEEEECC
Q psy14299         83 LEQTIQTSLAEKKIPLFVNATAGTTVLGAFDPLDEIATVCEKYDLWMHVDACWGGSLIFSEKYSFVLKGINRANSVSWNP  162 (448)
Q Consensus        83 Le~~l~~~~~~~~~~~lVv~~~~~t~tG~~~~l~~I~~ia~~~g~~l~VD~A~~~~~~~~~~~~~~~~~~~~aD~~~~s~  162 (448)
                      |+++|+++.+.+..|++|++++++|++|.++|+++|+++|++||+|+|||+||+++.+..+.++..+.+++.+|++++++
T Consensus       235 Le~~i~~~~~~g~~~~~vv~~~~~~~~G~vd~l~~I~~ia~~~~~~lhvD~a~~~~~~~~~~~~~~~~g~~~aDsv~~~~  314 (511)
T 3vp6_A          235 FEAKILEAKQKGYVPFYVNATAGTTVYGAFDPIQEIADICEKYNLWLHVDAAWGGGLLMSRKHRHKLNGIERANSVTWNP  314 (511)
T ss_dssp             HHHHHHHHHHTTCEEEEEEEEBSCSSSCCBCCHHHHHHHHHHHTCEEEEEETTGGGGGGCTTTGGGGTTGGGCSEEEECT
T ss_pred             HHHHHHHHHhcCCCcEEEEEecCCCCCcccccHHHHHHHHHHcCCEEEEEccchhhHhhChhhhhhccCCccCCEEEECc
Confidence            99999987777777999999999999999999999999999999999999999999998887777777777899999999


Q ss_pred             ccccCCCCceEEEEEeccchhhhhccCCcccccccCcccccccCCCCCcccCCCCchhHHHHHHHHHhChHHHHHHHHHh
Q psy14299        163 HKMLGAPLQCSILLIKEKGLLHQANATAATYLFQQDKFYDVSFDTGDKSVQCGRKVDAFKLWLMWKARGNLGFRHFVDNA  242 (448)
Q Consensus       163 hK~l~~P~g~G~l~vr~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~g~~~~i~~~  242 (448)
                      |||+++|.|+|+++++++..+.......+.|+......+...+++..++++++|++.++++|++++.+|..|+.+     
T Consensus       315 hK~l~~p~g~g~l~~~~~~~~~~~~~~~~~yl~~~~~~~~~~~~~~~~~~~~~r~~~al~~~~al~~~g~~gl~~-----  389 (511)
T 3vp6_A          315 HKMMGVLLQCSAILVKEKGILQGCNQMHASYLFQQDKHYDVSYDTGDKAIQCGRHVDIFKFWLMWKAKGTVGFEN-----  389 (511)
T ss_dssp             TSTTCCCSCCEEEEESSTTHHHHHHCCCCTTTCCSSCSSCGGGCCGGGSSCSSCCCCHHHHHHHHHHHHHHHHHH-----
T ss_pred             ccccCCCcCeEEEEEeCHHHHHHHhccCCccccCcccccccccCccCCCCCCCCchHHHHHHHHHHHHhHHHHHH-----
Confidence            999999999999999998777776677888887665444555667777888888888877777777766555554     


Q ss_pred             hhhccCCCccchhhhhhhhhhhhhhhhhhhhhhhccccccccccCCCCCccccccchhhHHHHHHHHHhcCccHHHHHHH
Q psy14299        243 VDCSRGSMTFSTLLCFDLQGLLHQANATAATYLFQQDKFYDVSFDTGDKSVQCGRKVDAFKLWLMWKARGNLGFRHFVDN  322 (448)
Q Consensus       243 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~  322 (448)
                                                                                                  +.++
T Consensus       390 ----------------------------------------------------------------------------~~~~  393 (511)
T 3vp6_A          390 ----------------------------------------------------------------------------QINK  393 (511)
T ss_dssp             ----------------------------------------------------------------------------HHHH
T ss_pred             ----------------------------------------------------------------------------HHHH
Confidence                                                                                        5566


Q ss_pred             HHHHHHHHHHHhhcCCCeEEecc--CCceeeEEEEeeccCCCccccchhhhhhhhhhhHHHHHHHHhCCcEEEEeeecCC
Q psy14299        323 AVDCSRYFLSQISQRPGFRLVIP--EFQCTNICFWFIPVSLRDKVEDETWWSTLSKVAPRIKEKLVLGGTLMIGYQPLQH  400 (448)
Q Consensus       323 ~~~l~~~~~~~L~~~pg~~l~~~--~~~~~~v~f~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~L~~~g~~~~~~~~~~g  400 (448)
                      ..++++++++.|+++|||+++ .  +|..++++|++.|.++++..........++..+.++.+.|.++|.+++.+....+
T Consensus       394 ~~~~a~~l~~~L~~~pg~~l~-~~~~p~~~~v~f~~~p~~~~~~~~~~~~~~~l~~~~~~l~~~L~~~G~~~~~~~~~~~  472 (511)
T 3vp6_A          394 CLELAEYLYAKIKNREEFEMV-FNGEPEHTNVCFWYIPQSLRGVPDSPQRREKLHKVAPKIKALMMESGTTMVGYQPQGD  472 (511)
T ss_dssp             HHHHHHHHHHHHHSCTTEEES-SSSCCSSSCEEEEECCGGGSSCCCCHHHHHHHHHHHHHHHHHHHHHTSCEEEEEEETT
T ss_pred             HHHHHHHHHHHHhcCCCEEEE-ecCCCCeEEEEEEEeCccccccccchhHHHHHHHHHHHHHHHHHhcCCEEEEEEEeCC
Confidence            777899999999999999998 5  5788999999988776543333444556666778899999999977776544443


Q ss_pred             cccccEEEEEecCCCCCCHHHHHHHHHHHHHHHHHhH
Q psy14299        401 RNLHNFFRLVTTCHPASSRQDMDYAIDQIELRGAEVD  437 (448)
Q Consensus       401 ~~~~~~lRis~~~~~~~t~edid~l~~al~~~~~~~~  437 (448)
                      .  .+++|++++ |+.++++||++++++|+++++++.
T Consensus       473 ~--~~~lRi~~~-~~~~t~~di~~ll~~i~~~~~~~~  506 (511)
T 3vp6_A          473 K--ANFFRMVIS-NPAATQSDIDFLIEEIERLGQDLH  506 (511)
T ss_dssp             E--EEEEEECCC-CTTCCHHHHHHHHHHHHHHHC---
T ss_pred             c--eEEEEEEec-CCCCCHHHHHHHHHHHHHHHHhhh
Confidence            2  258999998 799999999999999999987653

>4e1o_A HDC, histidine decarboxylase; lyase; HET: PLP PVH; 1.80A {Homo sapiens}

Probab=100.00  E-value=7.6e-44  Score=372.00  Aligned_cols=328  Identities=22%  Similarity=0.340  Sum_probs=273.3

Q ss_pred             ccEEEeCcHHHHHHHHHHHHHHhcCCcccccCCC-----CCCCeEEEecCCCchHHHHHHHHhCCCCCcEEEEecCCCCC
Q psy14299          3 LKPFLLPGGSISNMYSICLARYRLDPDTKRKGLS-----HLPPLCMFTSEDSHYSMLKAAHWLGIGMDNVIRVKTNERGQ   77 (448)
Q Consensus         3 ~~g~~t~ggT~an~~al~~a~~~~~~~~~~~G~~-----~~~~~~Vl~~~~~H~s~~~~~~~~g~~~~~v~~v~~~~~g~   77 (448)
                      .+|+||+|||+||++|+.++|++..++.+..|..     ..++++|+++..+|+|+.+++++.|.   +++.+|++++++
T Consensus       146 ~~g~~~~ggt~an~~al~~ar~~~~~~~~~~~~~~~~~~~~~~~~v~~s~~~H~s~~~~~~~~g~---~~~~v~~~~~~~  222 (481)
T 4e1o_A          146 GGGVLQSTVSESTLIALLAARKNKILEMKTSEPDADESSLNARLVAYASDQAHSSVEKAGLISLV---KMKFLPVDDNFS  222 (481)
T ss_dssp             CEEEEESCHHHHHHHHHHHHHHHHHHHHHHHCTTSCHHHHHTTEEEEEETTSCHHHHHHHHHHTC---EEEEECCCTTSC
T ss_pred             CceEEeCchHHHHHHHHHHHHHHHHHHhhhcCcccccccccCCeEEEEcCcchHHHHHHHHhCCC---ceEEEEcCCCCc
Confidence            4789999999999999999987643222221110     01578899999999999999999888   899999999999


Q ss_pred             cCHHHHHHHHHHhhhcCCCcEEEEEeccCCccccccCHHHHHHHHHHcCCEEEEecccccccccccchhhhhcCCCCccE
Q psy14299         78 MICSFLEQTIQTSLAEKKIPLFVNATAGTTVLGAFDPLDEIATVCEKYDLWMHVDACWGGSLIFSEKYSFVLKGINRANS  157 (448)
Q Consensus        78 id~e~Le~~l~~~~~~~~~~~lVv~~~~~t~tG~~~~l~~I~~ia~~~g~~l~VD~A~~~~~~~~~~~~~~~~~~~~aD~  157 (448)
                      +|+++|+++|+++.+.+..|++|++++++|++|.++|+++|+++|++||+|+|||+||+++.+..+..+....+++.+|+
T Consensus       223 ~d~~~Le~~i~~~~~~g~~~~~vv~~~~~t~~G~id~l~~I~~la~~~~~~lhvDaA~g~~~~~~~~~~~~~~gi~~aDs  302 (481)
T 4e1o_A          223 LRGEALQKAIEEDKQRGLVPVFVCATLGTTGVCAFDCLSELGPICAREGLWLHIDAAYAGTAFLCPEFRGFLKGIEYADS  302 (481)
T ss_dssp             CCHHHHHHHHHHHHHTTCEEEEEEEEBSCTTTCCBCCHHHHHHHHHHHTCEEEEECTTGGGGGGSGGGGGGGTTGGGCSE
T ss_pred             CCHHHHHHHHHHHHhCCCCcEEEEEecCCCCCcCcCCHHHHHHHHHHcCCeEEeehhhHHHHHhChhhHHHhcCcccCCE
Confidence            99999999999876666678899999999999999999999999999999999999999998877777766777778899


Q ss_pred             EEECCccccCCCCceEEEEEeccchhhhhccCCcccccccCcccccccCCCCCcccCCCCchhHHHHHHHHHhChHHHHH
Q psy14299        158 VSWNPHKMLGAPLQCSILLIKEKGLLHQANATAATYLFQQDKFYDVSFDTGDKSVQCGRKVDAFKLWLMWKARGNLGFRH  237 (448)
Q Consensus       158 ~~~s~hK~l~~P~g~G~l~vr~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~g~~~  237 (448)
                      +++++|||+++|.|+|+++++++..+...+...+.|+.....  ...+++.+++++++|++.++++|++++.+|.+|+.+
T Consensus       303 i~~~~hK~l~~p~g~g~l~~~~~~~l~~~~~~~~~yl~~~~~--~~~~~~~~~~~~~~r~~~~l~~~~al~~~g~~g~~~  380 (481)
T 4e1o_A          303 FTFNPSKWMMVHFDCTGFWVKDKYKLQQTFSVNPIYLRHANS--GVATDFMHWQIPLSRRFRSVKLWFVIRSFGVKNLQA  380 (481)
T ss_dssp             EEECHHHHSSCCSSCEEEEESBHHHHHTTTCCCCGGGCCTTT--TTSCCGGGGSSSSCCCCTHHHHHHHHHHHHHHHHHH
T ss_pred             EEEChHHhcCCCCceEEEEEeCHHHHHHHhcCCchhccCccc--CCCCCcccccccCCCCccHHHHHHHHHHhHHHHHHH
Confidence            999999999999999999999987766666667788865431  234566777888999988888888887776666555


Q ss_pred             HHHHhhhhccCCCccchhhhhhhhhhhhhhhhhhhhhhhccccccccccCCCCCccccccchhhHHHHHHHHHhcCccHH
Q psy14299        238 FVDNAVDCSRGSMTFSTLLCFDLQGLLHQANATAATYLFQQDKFYDVSFDTGDKSVQCGRKVDAFKLWLMWKARGNLGFR  317 (448)
Q Consensus       238 ~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~  317 (448)
                                                                                                      
T Consensus       381 --------------------------------------------------------------------------------  380 (481)
T 4e1o_A          381 --------------------------------------------------------------------------------  380 (481)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             HHHHHHHHHHHHHHHHhhcCCCeEEeccCCceeeEEEEeeccCCCccccchhhhhhhhhhhHHHHHHHHhCCcEEEEeee
Q psy14299        318 HFVDNAVDCSRYFLSQISQRPGFRLVIPEFQCTNICFWFIPVSLRDKVEDETWWSTLSKVAPRIKEKLVLGGTLMIGYQP  397 (448)
Q Consensus       318 ~~~~~~~~l~~~~~~~L~~~pg~~l~~~~~~~~~v~f~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~L~~~g~~~~~~~~  397 (448)
                       +.++..++++++.+.|+++|||+++ .++..++++|++.+.               +..+.++.++|.++|.+++.++.
T Consensus       381 -~~~~~~~~a~~l~~~L~~~~g~~~~-~~~~~~~v~f~~~~~---------------~~~~~~l~~~L~~~g~~~~~~~~  443 (481)
T 4e1o_A          381 -HVRHGTEMAKYFESLVRNDPSFEIP-AKRHLGLVVFRLKGP---------------NSLTENVLKEIAKAGRLFLIPAT  443 (481)
T ss_dssp             -HHHHHHHHHHHHHHHHHTCTTEECC-SCCCSSEEEEEESSC---------------HHHHHHHHHHHHHHCSSBCEEEE
T ss_pred             -HHHHHHHHHHHHHHHHhcCCCeEEe-cCCceeEEEEEeCCc---------------hHHHHHHHHHHHhCCeEEEEeeE
Confidence             5556677899999999999999998 778889999986431               11345889999999977788888


Q ss_pred             cCCcccccEEEEEecCCCCCCHHHHHHHHHHHHHHHHHh
Q psy14299        398 LQHRNLHNFFRLVTTCHPASSRQDMDYAIDQIELRGAEV  436 (448)
Q Consensus       398 ~~g~~~~~~lRis~~~~~~~t~edid~l~~al~~~~~~~  436 (448)
                      +.|.   .++|++++ ++.+|++||++++++|+++.+++
T Consensus       444 ~~g~---~~lR~~~~-~~~tt~~di~~~~~~i~~~~~~l  478 (481)
T 4e1o_A          444 IQDK---LIIRFTVT-SQFTTRDDILRDWNLIRDAATLI  478 (481)
T ss_dssp             ETTE---EEEEEECC-CTTCCHHHHHHHHHHHHHHHHHH
T ss_pred             ECCE---EEEEEEeC-CCCCCHHHHHHHHHHHHHHHHHH
Confidence            8776   89999998 78899999999999999998764

>3k40_A Aromatic-L-amino-acid decarboxylase; PLP dependent protein, alpha beta protein, alternative splicing, catecholamine biosynthesis, lyase; HET: LLP; 1.75A {Drosophila melanogaster} SCOP: c.67.1.6

Probab=100.00  E-value=5e-44  Score=372.81  Aligned_cols=328  Identities=23%  Similarity=0.372  Sum_probs=254.3

Q ss_pred             ccEEEeCcHHHHHHHHHHHHHHhcCCcccccCC--C---CCCCeEEEecCCCchHHHHHHHHhCCCCCcEEEEecCCCCC
Q psy14299          3 LKPFLLPGGSISNMYSICLARYRLDPDTKRKGL--S---HLPPLCMFTSEDSHYSMLKAAHWLGIGMDNVIRVKTNERGQ   77 (448)
Q Consensus         3 ~~g~~t~ggT~an~~al~~a~~~~~~~~~~~G~--~---~~~~~~Vl~~~~~H~s~~~~~~~~g~~~~~v~~v~~~~~g~   77 (448)
                      .+|+||+|||+||++|+.++|.+..++.+..|-  .   ..++++|+++..+|+|+.+++++.|+   +++.||+++++ 
T Consensus       140 ~~gv~t~ggt~anl~al~~ar~~~~~~~~~~~~~~~~~~~~~~~~vi~s~~~H~s~~~~~~~~g~---~~~~v~~d~~~-  215 (475)
T 3k40_A          140 GGGVIQGTASESTLVALLGAKAKKLKEVKELHPEWDEHTILGKLVGYCSDQAHSSVERAGLLGGV---KLRSVQSENHR-  215 (475)
T ss_dssp             CEEEEESCHHHHHHHHHHHHHHHHHHHHHHHCTTSCHHHHHHHEEEEEETTSCHHHHHHHHHHTC---EEEEECCBTTB-
T ss_pred             CCeEEcCchHHHHHHHHHHHHHHHHHHhhccCcccccccccCCeEEEECCCchHHHHHHHHHcCC---ceEEEECCCCC-
Confidence            369999999999999999998764322221110  0   01457899999999999999999998   89999999999 


Q ss_pred             cCHHHHHHHHHHhhhcCCCcEEEEEeccCCccccccCHHHHHHHHHHcCCEEEEecccccccccccchhhhhcCCCCccE
Q psy14299         78 MICSFLEQTIQTSLAEKKIPLFVNATAGTTVLGAFDPLDEIATVCEKYDLWMHVDACWGGSLIFSEKYSFVLKGINRANS  157 (448)
Q Consensus        78 id~e~Le~~l~~~~~~~~~~~lVv~~~~~t~tG~~~~l~~I~~ia~~~g~~l~VD~A~~~~~~~~~~~~~~~~~~~~aD~  157 (448)
                      +|+++|+++|+++.+.+..|++|++++++|++|.++|+++|+++|++||+|+|||+||+++.+..+..+..+.+++.+|+
T Consensus       216 ~d~~~L~~~i~~~~~~~~~~~~v~~~~~~t~~G~~~~l~~I~~la~~~~~~lhvD~A~~~~~~~~~~~~~~~~gi~~~Ds  295 (475)
T 3k40_A          216 MRGAALEKAIEQDVAEGLIPFYAVVTLGTTNSCAFDYLDECGPVGNKHNLWIHVDAAYAGSAFICPEYRHLMKGIESADS  295 (475)
T ss_dssp             CCHHHHHHHHHHHHHTTCEEEEEEEEBSCTTTCCBCCHHHHHHHHHHTTCEEEEECTTGGGGGGSGGGGGGGTTGGGCSE
T ss_pred             cCHHHHHHHHHHHHHCCCccEEEEEEecCCCCcCcCCHHHHHHHHHHhCCeEEEeHHhHHHHHhCHhhHHHhcCcccCCE
Confidence            99999999999876666678899999999999999999999999999999999999999988877766666677777999


Q ss_pred             EEECCccccCCCCceEEEEEeccchhhhhccCCcccccccCcccccccCCCCCcccCCCCchhHHHHHHHHHhChHHHHH
Q psy14299        158 VSWNPHKMLGAPLQCSILLIKEKGLLHQANATAATYLFQQDKFYDVSFDTGDKSVQCGRKVDAFKLWLMWKARGNLGFRH  237 (448)
Q Consensus       158 ~~~s~hK~l~~P~g~G~l~vr~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~g~~~  237 (448)
                      +++++|||+++|.|+|+++++++..+...+...+.|+.....  ...+++.+++++++|++.++++|++++.+|..|+.+
T Consensus       296 ~~~~~hK~l~~p~g~g~l~~~~~~~l~~~~~~~~~yl~~~~~--~~~~~~~~~~~~~sr~~~~l~l~~al~~~g~~g~~~  373 (475)
T 3k40_A          296 FNFNPHKWMLVNFDCSAMWLKDPSWVVNAFNVDPLYLKHDMQ--GSAPDYRHWQIPLGRRFRALKLWFVLRLYGVENLQA  373 (475)
T ss_dssp             EEECHHHHSSCCSSCEEEEESSGGGC-----------------------------CCCGGGTHHHHHHHHHHHHHHHHHH
T ss_pred             EEECchhccCCCCceEEEEEeCHHHHHHHhcCCccccCCCcC--CCCCCcccccccCCCcccHHHHHHHHHHHhHHHHHH
Confidence            999999999999999999999987666555566778754321  223556677888888887777777777766555554


Q ss_pred             HHHHhhhhccCCCccchhhhhhhhhhhhhhhhhhhhhhhccccccccccCCCCCccccccchhhHHHHHHHHHhcCccHH
Q psy14299        238 FVDNAVDCSRGSMTFSTLLCFDLQGLLHQANATAATYLFQQDKFYDVSFDTGDKSVQCGRKVDAFKLWLMWKARGNLGFR  317 (448)
Q Consensus       238 ~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~  317 (448)
                                                                                                      
T Consensus       374 --------------------------------------------------------------------------------  373 (475)
T 3k40_A          374 --------------------------------------------------------------------------------  373 (475)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             HHHHHHHHHHHHHHHHhhcCCCeEEeccCCceeeEEEEeeccCCCccccchhhhhhhhhhhHHHHHHHHhCCcEEEEeee
Q psy14299        318 HFVDNAVDCSRYFLSQISQRPGFRLVIPEFQCTNICFWFIPVSLRDKVEDETWWSTLSKVAPRIKEKLVLGGTLMIGYQP  397 (448)
Q Consensus       318 ~~~~~~~~l~~~~~~~L~~~pg~~l~~~~~~~~~v~f~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~L~~~g~~~~~~~~  397 (448)
                       +.++..++++++.+.|+++|||+++ .++..++++|++.+.               +..+.++.++|.++|.+++.++.
T Consensus       374 -~~~~~~~~a~~l~~~L~~~~g~~l~-~~~~~~iv~f~~~~~---------------~~~~~~l~~~L~~~g~~~~~~~~  436 (475)
T 3k40_A          374 -HIRRHCNFAKQFGDLCVADSRFELA-AEINMGLVCFRLKGS---------------NERNEALLKRINGRGHIHLVPAK  436 (475)
T ss_dssp             -HHHHHHHHHHHHHHHHHHSTTEEES-SCCBTTEEEEEESSC---------------HHHHHHHHHHHHHHTSCBCEEEE
T ss_pred             -HHHHHHHHHHHHHHHHhcCCCEEEe-cCCceEEEEEEeCCc---------------hHHHHHHHHHHHhCCcEEEEeeE
Confidence             5666778899999999999999998 778889999987431               11345889999999988888888


Q ss_pred             cCCcccccEEEEEecCCCCCCHHHHHHHHHHHHHHHHHhH
Q psy14299        398 LQHRNLHNFFRLVTTCHPASSRQDMDYAIDQIELRGAEVD  437 (448)
Q Consensus       398 ~~g~~~~~~lRis~~~~~~~t~edid~l~~al~~~~~~~~  437 (448)
                      +.|.   .++|++++ ++.+|++||++++++|+++.+++.
T Consensus       437 ~~g~---~~lR~~~~-~~~tt~~di~~~~~~i~~~~~~~~  472 (475)
T 3k40_A          437 IKDV---YFLRMAIC-SRFTQSEDMEYSWKEVSAAADEME  472 (475)
T ss_dssp             ETTE---EEEEEECC-CTTCCHHHHHHHHHHHHHHHHHHH
T ss_pred             ECCE---EEEEEEeC-CCCCCHHHHHHHHHHHHHHHHHHh
Confidence            8886   89999998 789999999999999999988754

>2okj_A Glutamate decarboxylase 1; PLP-dependent decarboxylase, lyase; HET: LLP PLZ; 2.30A {Homo sapiens} PDB: 2okk_A*

Probab=100.00  E-value=6.9e-42  Score=358.99  Aligned_cols=349  Identities=52%  Similarity=0.935  Sum_probs=274.5

Q ss_pred             ccEEEeCcHHHHHHHHHHHHHHhcCCcccccCCCCCCCeEEEecCCCchHHHHHHHHhCCCCCcEEEEecCCCCCcCHHH
Q psy14299          3 LKPFLLPGGSISNMYSICLARYRLDPDTKRKGLSHLPPLCMFTSEDSHYSMLKAAHWLGIGMDNVIRVKTNERGQMICSF   82 (448)
Q Consensus         3 ~~g~~t~ggT~an~~al~~a~~~~~~~~~~~G~~~~~~~~Vl~~~~~H~s~~~~~~~~g~~~~~v~~v~~~~~g~id~e~   82 (448)
                      ..++||+|||+||++++.+++.+..++.++.|+...++.+|+++..+|+|+.++++.+|++..+++.+|.++++.+|+++
T Consensus       152 ~~~~~t~ggtea~~~al~~~~~~~~~~~~~~G~~~~~~~~v~~s~~~h~s~~~~~~~~g~g~~~v~~v~~~~~~~~d~~~  231 (504)
T 2okj_A          152 GDGIFSPGGAISNMYSIMAARYKYFPEVKTKGMAAVPKLVLFTSEQSHYSIKKAGAALGFGTDNVILIKCNERGKIIPAD  231 (504)
T ss_dssp             CEEEEESSHHHHHHHHHHHHHHHHCTTHHHHCGGGSCCEEEEEETTSCTHHHHHHHHTTSCGGGEEEECBCTTSCBCHHH
T ss_pred             CCEEEeCCcHHHHHHHHHHHHHHHhhHHhhcCccccCCeEEEECCcchHHHHHHHHHcCCCcccEEEEecCCCCCCCHHH
Confidence            46999999999999999999875444444444322234479999999999999999998865468999998899999999


Q ss_pred             HHHHHHHhhhcCCCcEEEEEeccCCccccccCHHHHHHHHHHcCCEEEEecccccccccccchhhhhcCCCCccEEEECC
Q psy14299         83 LEQTIQTSLAEKKIPLFVNATAGTTVLGAFDPLDEIATVCEKYDLWMHVDACWGGSLIFSEKYSFVLKGINRANSVSWNP  162 (448)
Q Consensus        83 Le~~l~~~~~~~~~~~lVv~~~~~t~tG~~~~l~~I~~ia~~~g~~l~VD~A~~~~~~~~~~~~~~~~~~~~aD~~~~s~  162 (448)
                      |+++|+++..++.+|++|++++++|++|.++|+++|+++|++||+|+|||+||+++.+..+..+..+.+++.+|++++++
T Consensus       232 L~~~i~~~~~~g~~~~~V~~~~~~~~tG~i~~l~~I~~la~~~g~~lhvD~a~~~~~~~~~~~~~~~~g~~~~D~i~~~~  311 (504)
T 2okj_A          232 FEAKILEAKQKGYVPFYVNATAGTTVYGAFDPIQEIADICEKYNLWLHVDAAWGGGLLMSRKHRHKLNGIERANSVTWNP  311 (504)
T ss_dssp             HHHHHHHHHHTTCEEEEEEECBSCSSSCCBCCHHHHHHHHHHHTCEEEEEETTGGGGGGCTTTGGGGTTGGGCSEEEECT
T ss_pred             HHHHHHHHHHCCCCceEEEEeCCCCCCCCcCCHHHHHHHHHHcCCEEEEehhhhhHHHhCHhhHhhcCCcccCCEEEECc
Confidence            99999886666667899999999999999999999999999999999999999999887666555666666799999999


Q ss_pred             ccccCCCCceEEEEEeccchhhhhccCCcccccccCcccccccCCCCCcccCCCCchhHHHHHHHHHhChHHHHHHHHHh
Q psy14299        163 HKMLGAPLQCSILLIKEKGLLHQANATAATYLFQQDKFYDVSFDTGDKSVQCGRKVDAFKLWLMWKARGNLGFRHFVDNA  242 (448)
Q Consensus       163 hK~l~~P~g~G~l~vr~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~g~~~~i~~~  242 (448)
                      |||+++|.++|+++++++.++...+...++|+..........+++.+++++.+|++.++++|++++.+|..++.+     
T Consensus       312 hK~~~~p~~~g~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~rr~~~l~~~a~l~~lg~~g~~~-----  386 (504)
T 2okj_A          312 HKMMGVLLQCSAILVKEKGILQGCNQMCAGYLFQPDKQYDVSYDTGDKAIQCGRHVDIFKFWLMWKAKGTVGFEN-----  386 (504)
T ss_dssp             TSTTCCCSCCEEEEESSTTHHHHHHCCCCSSSCCSCCSSCGGGCCGGGSSCSSCBCCHHHHHHHHHHHHHHHHHH-----
T ss_pred             hhhcCCCcceEEEEEECHHHHHHHhcCCCccccCCcccccCcCCcccCCCCCCCCccHHHHHHHHHHhhHHHHHH-----
Confidence            999999999999999987666555556677876543222333556677788899988888888777766555444     


Q ss_pred             hhhccCCCccchhhhhhhhhhhhhhhhhhhhhhhccccccccccCCCCCccccccchhhHHHHHHHHHhcCccHHHHHHH
Q psy14299        243 VDCSRGSMTFSTLLCFDLQGLLHQANATAATYLFQQDKFYDVSFDTGDKSVQCGRKVDAFKLWLMWKARGNLGFRHFVDN  322 (448)
Q Consensus       243 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~  322 (448)
                                                                                                  +.++
T Consensus       387 ----------------------------------------------------------------------------~~~~  390 (504)
T 2okj_A          387 ----------------------------------------------------------------------------QINK  390 (504)
T ss_dssp             ----------------------------------------------------------------------------HHHH
T ss_pred             ----------------------------------------------------------------------------HHHH
Confidence                                                                                        5566


Q ss_pred             HHHHHHHHHHHhhcCCCeEEecc--CCceeeEEEEeeccCCCccccchhhhhhhhhhhHHHHHHHHhCCcEEEEeeecCC
Q psy14299        323 AVDCSRYFLSQISQRPGFRLVIP--EFQCTNICFWFIPVSLRDKVEDETWWSTLSKVAPRIKEKLVLGGTLMIGYQPLQH  400 (448)
Q Consensus       323 ~~~l~~~~~~~L~~~pg~~l~~~--~~~~~~v~f~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~L~~~g~~~~~~~~~~g  400 (448)
                      ..++++++.+.|+++||++++ .  ++..++++|++.|....+.....++.+.++..+.++.+.|.++|++++.+..+.+
T Consensus       391 ~~~~a~~l~~~L~~~~~~~~~-~~~~p~~~~v~f~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~G~~~~~~~~~~~  469 (504)
T 2okj_A          391 CLELAEYLYAKIKNREEFEMV-FNGEPEHTNVCFWYIPQSLRGVPDSPQRREKLHKVAPKIKALMMESGTTMVGYQPQGD  469 (504)
T ss_dssp             HHHHHHHHHHHHTTCTTEEES-SSSCCSSSCEEEEECCGGGSSCCCCHHHHHHHTTHHHHHHHHHHHHTSCEEEEEEETT
T ss_pred             HHHHHHHHHHHHhcCCCEEEE-ecCCCCeEEEEEEEeCccccccccchhhHHHHHHHHHHHHHHHHhCCcEEEEeeEECC
Confidence            777899999999999999998 5  5788999998765432111111223334445567899999999977777655544


Q ss_pred             cccccEEEEEecCCCCCCHHHHHHHHHHHHHHHHHh
Q psy14299        401 RNLHNFFRLVTTCHPASSRQDMDYAIDQIELRGAEV  436 (448)
Q Consensus       401 ~~~~~~lRis~~~~~~~t~edid~l~~al~~~~~~~  436 (448)
                      .  .+++|++++ |+++|++||++++++|+++++++
T Consensus       470 ~--~~~lRis~~-~~~~t~edi~~~~~~l~~~~~~~  502 (504)
T 2okj_A          470 K--ANFFRMVIS-NPAATQSDIDFLIEEIERLGQDL  502 (504)
T ss_dssp             E--EEEEEECCC-CTTCCHHHHHHHHHHHHHHHTC-
T ss_pred             c--eEEEEEEeC-CCCCCHHHHHHHHHHHHHHHHHH
Confidence            2  268999997 79999999999999999887653

>2jis_A Cysteine sulfinic acid decarboxylase; pyridoxal phosphate, alternative splicing, pyridoxal phosphate (PLP), structural genomics consortium (SGC); HET: PLP; 1.6A {Homo sapiens}

Probab=100.00  E-value=2.5e-41  Score=355.76  Aligned_cols=348  Identities=52%  Similarity=0.945  Sum_probs=266.3

Q ss_pred             ccEEEeCcHHHHHHHHHHHHHHhcCCcccccCCCCCCCeEEEecCCCchHHHHHHHHhCCCCCcEEEEecCCCCCcCHHH
Q psy14299          3 LKPFLLPGGSISNMYSICLARYRLDPDTKRKGLSHLPPLCMFTSEDSHYSMLKAAHWLGIGMDNVIRVKTNERGQMICSF   82 (448)
Q Consensus         3 ~~g~~t~ggT~an~~al~~a~~~~~~~~~~~G~~~~~~~~Vl~~~~~H~s~~~~~~~~g~~~~~v~~v~~~~~g~id~e~   82 (448)
                      ..++||+|||+||++++.+++.+..++.++.|....++..|+++..+|+|+.++++.+|++..+++.+|.++++.+|+++
T Consensus       166 ~~~~~t~ggtea~~~al~~ar~~~~~~~~~~G~~~~~~~~vl~s~~~h~s~~~~~~~~g~g~~~v~~v~~~~~~~~d~~~  245 (515)
T 2jis_A          166 GDGIFCPGGSISNMYAVNLARYQRYPDCKQRGLRTLPPLALFTSKECHYSIQKGAAFLGLGTDSVRVVKADERGKMVPED  245 (515)
T ss_dssp             CEEEEESSHHHHHHHHHHHHHHHHCTTHHHHCGGGSCCEEEEEETTSCTHHHHHHHHTTSCGGGEEEECBCTTSCBCHHH
T ss_pred             CCeEEcCCcHHHHHHHHHHHHHHHhhHHhhcCccccCCeEEEECCCccHHHHHHHHHcCCCCCcEEEEecCCCCcCCHHH
Confidence            46899999999999999998865333222223211134479999999999999999999865468999998899999999


Q ss_pred             HHHHHHHhhhcCCCcEEEEEeccCCccccccCHHHHHHHHHHcCCEEEEecccccccccccchhhhhcCCCCccEEEECC
Q psy14299         83 LEQTIQTSLAEKKIPLFVNATAGTTVLGAFDPLDEIATVCEKYDLWMHVDACWGGSLIFSEKYSFVLKGINRANSVSWNP  162 (448)
Q Consensus        83 Le~~l~~~~~~~~~~~lVv~~~~~t~tG~~~~l~~I~~ia~~~g~~l~VD~A~~~~~~~~~~~~~~~~~~~~aD~~~~s~  162 (448)
                      |+++|+++...+.+|++|++++++|++|.++|+++|+++|++||+|+|||+||+++....+.....+.++..+|++++++
T Consensus       246 L~~~i~~~~~~g~~~~~Vv~~~~~n~tG~i~~l~~I~~la~~~g~~l~vD~a~~~~~~~~~~~~~~~~g~~~aD~v~~s~  325 (515)
T 2jis_A          246 LERQIGMAEAEGAVPFLVSATSGTTVLGAFDPLEAIADVCQRHGLWLHVDAAWGGSVLLSQTHRHLLDGIQRADSVAWNP  325 (515)
T ss_dssp             HHHHHHHHHHTTCEEEEEEEEBSCTTTCCBCCHHHHHHHHHHHTCEEEEEETTGGGGGGCTTTGGGGTTGGGCSEEEECT
T ss_pred             HHHHHHHHHhCCCCcEEEEEeCCCCCCCCccCHHHHHHHHHHcCCeEEEehhhhhHHHhChhhHhhcCCCccCCEEEECc
Confidence            99999876666667899999999999999999999999999999999999999999988776665666776799999999


Q ss_pred             ccccCCCCceEEEEEecc-chhhhhccCCcccccccCcccccccCCCCCcccCCCCchhHHHHHHHHHhChHHHHHHHHH
Q psy14299        163 HKMLGAPLQCSILLIKEK-GLLHQANATAATYLFQQDKFYDVSFDTGDKSVQCGRKVDAFKLWLMWKARGNLGFRHFVDN  241 (448)
Q Consensus       163 hK~l~~P~g~G~l~vr~~-~~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~g~~~~i~~  241 (448)
                      |||+++|.|+|+++++++ .++.......++|+..........++.+.++++.+|++.++++|++++.+|..|+++    
T Consensus       326 hK~l~~p~g~G~l~~~~~~~~~~~~~~~~~~yl~~~~~~~~~~~~~~~~~~~~~rr~~al~~~~~l~~lg~~g~~~----  401 (515)
T 2jis_A          326 HKLLAAGLQCSALLLQDTSNLLKRCHGSQASYLFQQDKFYDVALDTGDKVVQCGRRVDCLKLWLMWKAQGDQGLER----  401 (515)
T ss_dssp             TSTTCCCSCCEEEEESCCSCHHHHHHCC---------CCSCGGGCCGGGCSCSSCCCCHHHHHHHHHHHHHHHHHH----
T ss_pred             ccccCCCCCeeEEEEeChHHHHHHHhcCCchhccCCcccccccCCCCCCCCCCCCcccHHHHHHHHHHHhHHHHHH----
Confidence            999999999999999887 555555555677775433222233455666778888888888887777766555444    


Q ss_pred             hhhhccCCCccchhhhhhhhhhhhhhhhhhhhhhhccccccccccCCCCCccccccchhhHHHHHHHHHhcCccHHHHHH
Q psy14299        242 AVDCSRGSMTFSTLLCFDLQGLLHQANATAATYLFQQDKFYDVSFDTGDKSVQCGRKVDAFKLWLMWKARGNLGFRHFVD  321 (448)
Q Consensus       242 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~  321 (448)
                                                                                                   +.+
T Consensus       402 -----------------------------------------------------------------------------~~~  404 (515)
T 2jis_A          402 -----------------------------------------------------------------------------RID  404 (515)
T ss_dssp             -----------------------------------------------------------------------------HHH
T ss_pred             -----------------------------------------------------------------------------HHH
Confidence                                                                                         566


Q ss_pred             HHHHHHHHHHHHhhcCCCeEEeccCCceeeEEEEeeccCCCccccchhhhhhhhhhhHHHHHHHHhCCcEEEEeeecCCc
Q psy14299        322 NAVDCSRYFLSQISQRPGFRLVIPEFQCTNICFWFIPVSLRDKVEDETWWSTLSKVAPRIKEKLVLGGTLMIGYQPLQHR  401 (448)
Q Consensus       322 ~~~~l~~~~~~~L~~~pg~~l~~~~~~~~~v~f~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~L~~~g~~~~~~~~~~g~  401 (448)
                      +..++++++.+.|+++||++++ .++..++++|++.|.++.+.....++.+.++..+..+.+.|.+.|.+++.+....+.
T Consensus       405 ~~~~~a~~l~~~L~~~~g~~~~-~~~~~~~v~f~~~p~~~~~~~~~~~~~~~l~~~~~~l~~~l~~~G~~~~~~~~~~~~  483 (515)
T 2jis_A          405 QAFVLARYLVEEMKKREGFELV-MEPEFVNVCFWFVPPSLRGKQESPDYHERLSKVAPVLKERMVKEGSMMIGYQPHGTR  483 (515)
T ss_dssp             HHHHHHHHHHHHHHTSTTEEES-SCCSSSEEEEEECCGGGTTCTTSTTHHHHHHTHHHHHHHHHHHHTSCEEEEEEETTE
T ss_pred             HHHHHHHHHHHHHhcCCCEEEe-CCCCeeEEEEEEeCccccccccchhHHHHHHHHHHHHHHHHHhcCCEEEEEEEECCc
Confidence            6778899999999999999998 667778899988665432210122334455555667889999999777665554442


Q ss_pred             ccccEEEEEecCCCCCCHHHHHHHHHHHHHHHHH
Q psy14299        402 NLHNFFRLVTTCHPASSRQDMDYAIDQIELRGAE  435 (448)
Q Consensus       402 ~~~~~lRis~~~~~~~t~edid~l~~al~~~~~~  435 (448)
                        ++++|++++ ++++|++||++++++|+++.++
T Consensus       484 --~~~lRis~~-~~~~t~edid~~~~~l~~~~~~  514 (515)
T 2jis_A          484 --GNFFRVVVA-NSALTCADMDFLLNELERLGQD  514 (515)
T ss_dssp             --EEEEEEECC-CTTCCHHHHHHHHHHHHHHHTT
T ss_pred             --eEEEEEEeC-CCCCCHHHHHHHHHHHHHHHhh
Confidence              369999997 7999999999999999988653

>1js3_A DDC;, DOPA decarboxylase; carbidopa, parkinson'S disease, vitamin; HET: PLP 142; 2.25A {Sus scrofa} SCOP: c.67.1.6 PDB: 1js6_A* 3rch_A* 3rbl_A 3rbf_A*

Probab=100.00  E-value=6.2e-40  Score=342.41  Aligned_cols=333  Identities=23%  Similarity=0.356  Sum_probs=253.0

Q ss_pred             ccEEEeCcHHHHHHHHHHHHHHhcCCccccc-CC-C---CCCCeEEEecCCCchHHHHHHHHhCCCCCcEEEEecCCCCC
Q psy14299          3 LKPFLLPGGSISNMYSICLARYRLDPDTKRK-GL-S---HLPPLCMFTSEDSHYSMLKAAHWLGIGMDNVIRVKTNERGQ   77 (448)
Q Consensus         3 ~~g~~t~ggT~an~~al~~a~~~~~~~~~~~-G~-~---~~~~~~Vl~~~~~H~s~~~~~~~~g~~~~~v~~v~~~~~g~   77 (448)
                      ..|+||+|||+||++++.+++.+..++.+.. |- .   ..++.+|+++..+|+|+.++++..|+   .++.+|+++++.
T Consensus       140 ~~~v~t~ggTeA~~~al~~~~~~~~~~~~~~~gd~~~~~~~~~~~v~~s~~~h~s~~~~~~~~G~---~v~~v~~d~~~~  216 (486)
T 1js3_A          140 GGGVIQGSASEATLVALLAARTKVVRRLQAASPGLTQGAVLEKLVAYASDQAHSSVERAGLIGGV---KLKAIPSDGKFA  216 (486)
T ss_dssp             CEEEEESCHHHHHHHHHHHHHHHHHHHHHHHSTTCCHHHHHHHEEEEEETTCCHHHHHHHHHHTC---EEEEECCCTTSC
T ss_pred             CCeEEcCCcHHHHHHHHHHHHHHHhhhhhccCccchhcccCCCEEEEECCCCcHHHHHHHHhCCC---ceEEeecCCCCC
Confidence            3589999999999999998876421111110 10 0   00234688999999999999999999   799999988999


Q ss_pred             cCHHHHHHHHHHhhhcCCCcEEEEEeccCCccccccCHHHHHHHHHHcCCEEEEecccccccccccchhhhhcCCCCccE
Q psy14299         78 MICSFLEQTIQTSLAEKKIPLFVNATAGTTVLGAFDPLDEIATVCEKYDLWMHVDACWGGSLIFSEKYSFVLKGINRANS  157 (448)
Q Consensus        78 id~e~Le~~l~~~~~~~~~~~lVv~~~~~t~tG~~~~l~~I~~ia~~~g~~l~VD~A~~~~~~~~~~~~~~~~~~~~aD~  157 (448)
                      +|+++|+++|+++.+.+..|.+|++++++|++|.++|+++|+++|++||+|+|||+||+++.+..+..+..+.++..+|+
T Consensus       217 ~d~~~L~~~i~~~~~~g~~p~~vv~~~~~n~tG~~~~l~~I~~la~~~~~~lhvD~a~g~~~~~~~~~~~~~~g~~~ads  296 (486)
T 1js3_A          217 MRASALQEALERDKAAGLIPFFVVATLGTTSCCSFDNLLEVGPICHEEDIWLHVDAAYAGSAFICPEFRHLLNGVEFADS  296 (486)
T ss_dssp             CCHHHHHHHHHHHHHTTCEEEEEEEEBSCTTTCCBCCHHHHHHHHHHTTCEEEEECTTGGGGGGSTTTGGGGTTGGGCSE
T ss_pred             CCHHHHHHHHHHHHhCCCCceEEEEeCCCCCCCCCCCHHHHHHHHHHcCCEEEEehhhHHHHHHCHHHHHHhcCccccCe
Confidence            99999999998876666667899999999999999999999999999999999999999988777666655556667999


Q ss_pred             EEECCccccCCCCceEEEEEeccchhhhhccCCcccccccCcccccccCCCCCcccCCCCchhHHHHHHHHHhChHHHHH
Q psy14299        158 VSWNPHKMLGAPLQCSILLIKEKGLLHQANATAATYLFQQDKFYDVSFDTGDKSVQCGRKVDAFKLWLMWKARGNLGFRH  237 (448)
Q Consensus       158 ~~~s~hK~l~~P~g~G~l~vr~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~g~~~  237 (448)
                      +++++|||+++|.++|+++++++..+...+...+.|+...........++.+++++++|++.++++|++++.+|..++. 
T Consensus       297 i~~~~hK~~~~p~~~G~l~~~~~~~l~~~~~~~~~yl~~~~~~~~~~~~~~~~~~~~~rr~~~~~~~~al~~~g~~g~~-  375 (486)
T 1js3_A          297 FNFNPHKWLLVNFDCSAMWVKRRTDLTGAFKLDPVYLKHSHQGSGLITDYRHWQLPLGRRFRSLKMWFVFRMYGVKGLQ-  375 (486)
T ss_dssp             EEECHHHHSSCCSSCEEEEESCHHHHHGGGC------------CCSCCCGGGSSSCSCCCCTHHHHHHHHHHHHHHHHH-
T ss_pred             eEEchhhhcCCCcceEEEEEeCHHHHHHHhcCCchhhCCCcccccCCCCccccCCCCCCchhHHHHHHHHHHHhHHHHH-
Confidence            9999999999999999999988765444444456677543211112344455667778887777777766666555544 


Q ss_pred             HHHHhhhhccCCCccchhhhhhhhhhhhhhhhhhhhhhhccccccccccCCCCCccccccchhhHHHHHHHHHhcCccHH
Q psy14299        238 FVDNAVDCSRGSMTFSTLLCFDLQGLLHQANATAATYLFQQDKFYDVSFDTGDKSVQCGRKVDAFKLWLMWKARGNLGFR  317 (448)
Q Consensus       238 ~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~  317 (448)
                                                                                                      
T Consensus       376 --------------------------------------------------------------------------------  375 (486)
T 1js3_A          376 --------------------------------------------------------------------------------  375 (486)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             HHHHHHHHHHHHHHHHhhcCCCeEEeccCCceeeEEEEeeccCCCccccchhhhhhhhhhhHHHHHHHHhCCcEEEEeee
Q psy14299        318 HFVDNAVDCSRYFLSQISQRPGFRLVIPEFQCTNICFWFIPVSLRDKVEDETWWSTLSKVAPRIKEKLVLGGTLMIGYQP  397 (448)
Q Consensus       318 ~~~~~~~~l~~~~~~~L~~~pg~~l~~~~~~~~~v~f~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~L~~~g~~~~~~~~  397 (448)
                      ++.++..++++++.+.|+++||++++ .++..++++|++.+.               +..+.++.+.|.++|++++.+..
T Consensus       376 ~~~~~~~~~a~~l~~~L~~~~~~~~~-~~~~~~~v~f~~~~~---------------~~~~~~l~~~L~~~g~~~~~~~~  439 (486)
T 1js3_A          376 AYIRKHVQLSHEFEAFVLQDPRFEVC-AEVTLGLVCFRLKGS---------------DGLNEALLERINSARKIHLVPCR  439 (486)
T ss_dssp             HHHHHHHHHHHHHHHHHHHCTTEEEC-SCCCSSEEEEEESSC---------------HHHHHHHHHHHHHHTSCBCEEEE
T ss_pred             HHHHHHHHHHHHHHHHHhcCCCeEEe-CCCceeEEEEEecCh---------------HHHHHHHHHHHHhcCCEEEEEEE
Confidence            45666777899999999999999998 667788999976421               11235788999988977777766


Q ss_pred             cCCcccccEEEEEecCCCCCCHHHHHHHHHHHHHHHHHhHHh
Q psy14299        398 LQHRNLHNFFRLVTTCHPASSRQDMDYAIDQIELRGAEVDLE  439 (448)
Q Consensus       398 ~~g~~~~~~lRis~~~~~~~t~edid~l~~al~~~~~~~~~~  439 (448)
                      +.+.   +++|++++ ++++|++||+++++.|+++.+++..+
T Consensus       440 ~~~~---~~lRi~~~-~~~~t~~di~~~~~~l~~~~~~~~~~  477 (486)
T 1js3_A          440 LRGQ---FVLRFAIC-SRKVESGHVRLAWEHIRGLAAELLAA  477 (486)
T ss_dssp             ETTE---EEEEEECC-CTTCCHHHHHHHHHHHHHHHHHHHC-
T ss_pred             ECCE---EEEEEEeC-CCCCCHHHHHHHHHHHHHHHHHHHhh
Confidence            6665   89999987 78999999999999999998776543

>2qma_A Diaminobutyrate-pyruvate transaminase and L-2,4- diaminobutyrate decarboxylase; structural genomics, APC91511.1, glutamate decarboxylase; HET: MSE; 1.81A {Vibrio parahaemolyticus}

Probab=100.00  E-value=5.3e-39  Score=336.51  Aligned_cols=331  Identities=27%  Similarity=0.437  Sum_probs=249.3

Q ss_pred             ccEEEeCcHHHHHHHHHHHHHHhcC-----CcccccCCCCC-CCeEEEecCCCchHHHHHHHHhCCCCCcEEEEecCCCC
Q psy14299          3 LKPFLLPGGSISNMYSICLARYRLD-----PDTKRKGLSHL-PPLCMFTSEDSHYSMLKAAHWLGIGMDNVIRVKTNERG   76 (448)
Q Consensus         3 ~~g~~t~ggT~an~~al~~a~~~~~-----~~~~~~G~~~~-~~~~Vl~~~~~H~s~~~~~~~~g~~~~~v~~v~~~~~g   76 (448)
                      ..++||+|||+||+.++.++|....     ++.+..|+... ++..|+++..+|+|+.++++.+|.+..+++.+|.++++
T Consensus       159 ~~~~~t~ggt~a~~~al~~ar~~~~~~~~~~~~~~~G~~~~~g~~~v~~s~~~h~s~~~~~~~~g~g~~~v~~v~~~~~~  238 (497)
T 2qma_A          159 ADGIFTSGGTQSNQMGLMLARDWIADKLSGHSIQKLGLPDYADKLRIVCSKKSHFTVQKSASWMGLGEKAVMTVDANADG  238 (497)
T ss_dssp             CEEEEESSHHHHHHHHHHHHHHHHHHHHHCCCHHHHCSCGGGGGEEEEEETTSCTHHHHHHHHTTSCGGGEEEECBCTTS
T ss_pred             CCeEEcCCchHHHHHHHHHHHHHHHHhhcccchhhcccccccCCeEEEECCCchHHHHHHHHHcCCCcccEEEEecCCCC
Confidence            4799999999999999998865421     22233443210 13379999999999999999998865468999999899


Q ss_pred             CcCHHHHHHHHHHhhhcCCCcEEEEEeccCCccccccCHHHHHHHHHHcCCEEEEecccccccccccchhhhhcCCCCcc
Q psy14299         77 QMICSFLEQTIQTSLAEKKIPLFVNATAGTTVLGAFDPLDEIATVCEKYDLWMHVDACWGGSLIFSEKYSFVLKGINRAN  156 (448)
Q Consensus        77 ~id~e~Le~~l~~~~~~~~~~~lVv~~~~~t~tG~~~~l~~I~~ia~~~g~~l~VD~A~~~~~~~~~~~~~~~~~~~~aD  156 (448)
                      .+|+++|+++|+++.+.+.+|.+|++++++|++|.++|+++|+++|++||+|+|||+||+++..+.+ +...+.+++.+|
T Consensus       239 ~~d~~~L~~~i~~~~~~~~~~~~vv~~~~~~~tG~~~~l~~I~~l~~~~~~~l~vD~a~~~~~~~~~-~~~~~~gi~~~D  317 (497)
T 2qma_A          239 TMDITKLDEVIAQAKAEGLIPFAIVGTAGTTDHGAIDDLDFIADMAVKHDMWMHVDGAYGGALILSS-HKSRLKGVERAH  317 (497)
T ss_dssp             SBCGGGHHHHHHHHHHTTCEEEEEEEEBSCTTTCCBCCHHHHHHHHHHHTCEEEEEETTGGGGGGST-TGGGGTTGGGCS
T ss_pred             cCCHHHHHHHHHHHHHCCCcceEEEEcCCCCCCCCCCCHHHHHHHHHHcCCEEEEehhhhHHHHhCc-chHhhcCcccCC
Confidence            9999999999987655554566899999999999999999999999999999999999999987666 555556666799


Q ss_pred             EEEECCccccCCCCceEEEEEeccchhhhhccCCcccccccCcccccccCCCCCcccCCCCchhHHHHHHHHHhChHHHH
Q psy14299        157 SVSWNPHKMLGAPLQCSILLIKEKGLLHQANATAATYLFQQDKFYDVSFDTGDKSVQCGRKVDAFKLWLMWKARGNLGFR  236 (448)
Q Consensus       157 ~~~~s~hK~l~~P~g~G~l~vr~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~g~~  236 (448)
                      ++++++|||+++|.++|+++++++..+.. +...+.|+....   ...+++..++++++|++.++++|++++.+|..++.
T Consensus       318 ~i~~s~hK~l~~p~~~G~l~~~~~~~~~~-~~~~~~yl~~~~---~~~~~~~~~~~~~~r~~~al~~~~~l~~lg~~g~~  393 (497)
T 2qma_A          318 SISVDFHKLFYQTISCGALLVNDKSNFKF-LLHHADYLNREH---DELPNLVDKSIATTKRFDALKVFMTMQNVGPKALG  393 (497)
T ss_dssp             EEEEETTTTTCCCSSCEEEEESCGGGGGG-GCC-----------------------CCSCCCTHHHHHHHHHHTCHHHHH
T ss_pred             EEEEcchhccCCCcceEEEEEeCHHHHHH-hcCCchhcCCcc---ccCCCccccCCCCCCchhHHHHHHHHHHhCHHHHH
Confidence            99999999999999999999988765443 333456664322   11234455667788888887777777776655555


Q ss_pred             HHHHHhhhhccCCCccchhhhhhhhhhhhhhhhhhhhhhhccccccccccCCCCCccccccchhhHHHHHHHHHhcCccH
Q psy14299        237 HFVDNAVDCSRGSMTFSTLLCFDLQGLLHQANATAATYLFQQDKFYDVSFDTGDKSVQCGRKVDAFKLWLMWKARGNLGF  316 (448)
Q Consensus       237 ~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~  316 (448)
                      +                                                                               
T Consensus       394 ~-------------------------------------------------------------------------------  394 (497)
T 2qma_A          394 D-------------------------------------------------------------------------------  394 (497)
T ss_dssp             H-------------------------------------------------------------------------------
T ss_pred             H-------------------------------------------------------------------------------
Confidence            5                                                                               


Q ss_pred             HHHHHHHHHHHHHHHHHhhcCCCeEEeccCCceeeEEEEeeccCCCccccchhhhhhhhhhhHHHHHHHHhCCcEEEEee
Q psy14299        317 RHFVDNAVDCSRYFLSQISQRPGFRLVIPEFQCTNICFWFIPVSLRDKVEDETWWSTLSKVAPRIKEKLVLGGTLMIGYQ  396 (448)
Q Consensus       317 ~~~~~~~~~l~~~~~~~L~~~pg~~l~~~~~~~~~v~f~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~L~~~g~~~~~~~  396 (448)
                        +.++..++++++.+.|+++|+++++ .++..++++|++.+.+.           ..+.++.++.+.|.++|.++..+.
T Consensus       395 --~~~~~~~~a~~l~~~L~~~~~~~~~-~~~~~~~v~f~~~~~~~-----------~~~~l~~~l~~~l~~~G~~~~~~~  460 (497)
T 2qma_A          395 --MYDHLLAQTLEVADMIRTNDQFELL-AEPSLSTVLFRATHETA-----------DLDELNKALRLEALTRGIAVLGET  460 (497)
T ss_dssp             --HHHHHHHHHHHHHHHHHTCTTEEEC-SCCSSSEEEEEECCSSS-----------CHHHHHHHHHHHHHHHTSCBCEEE
T ss_pred             --HHHHHHHHHHHHHHHHhhCCCeEEE-cCCCceEEEEEEcCCcc-----------CHHHHHHHHHHHHHhCCCEEEEee
Confidence              5556677899999999999999998 67788899998754321           112234578889999997776666


Q ss_pred             ecCCcccccEEEEEecCCCCCCHHHHHHHHHHHHHHHHH
Q psy14299        397 PLQHRNLHNFFRLVTTCHPASSRQDMDYAIDQIELRGAE  435 (448)
Q Consensus       397 ~~~g~~~~~~lRis~~~~~~~t~edid~l~~al~~~~~~  435 (448)
                      .+.+.   +++|++++ ++++|++|+++++++|+++.++
T Consensus       461 ~~~g~---~~lRis~~-~~~~t~edi~~~~~~l~~~~~~  495 (497)
T 2qma_A          461 IVDGK---TALKFTIL-NPCLTTSDFESLLSKINMLAVE  495 (497)
T ss_dssp             EETTE---EEEEEECC-CTTCCHHHHHHHHHHHHHHHHH
T ss_pred             EECCE---EEEEEEec-CCCCCHHHHHHHHHHHHHHHHh
Confidence            66665   79999987 7999999999999999998765

>2dgk_A GAD-beta, GADB, glutamate decarboxylase beta; gadbd1-14, autoinhibition, substituted aldamine, lyase; HET: PLP; 1.90A {Escherichia coli} PDB: 2dgm_A* 1pmo_A* 2dgl_A* 1pmm_A* 3fz6_A* 3fz7_A 3fz8_A* 1xey_A*

Probab=100.00  E-value=8.9e-34  Score=293.19  Aligned_cols=314  Identities=16%  Similarity=0.168  Sum_probs=228.0

Q ss_pred             cEEEeCcHHHHHHHHHHHHHHhcCCcccccCCCCCCCeEEEecCCCchHHHHHHHHhCCCCCcEEEEecCC-CCCcCHHH
Q psy14299          4 KPFLLPGGSISNMYSICLARYRLDPDTKRKGLSHLPPLCMFTSEDSHYSMLKAAHWLGIGMDNVIRVKTNE-RGQMICSF   82 (448)
Q Consensus         4 ~g~~t~ggT~an~~al~~a~~~~~~~~~~~G~~~~~~~~Vl~~~~~H~s~~~~~~~~g~~~~~v~~v~~~~-~g~id~e~   82 (448)
                      .+++|+|||+||++++.+++....++.++.|+. .+++.|+++. +|+++.+++++.|+   +++.+|+++ ++.+|+++
T Consensus       105 ~~~~t~ggtea~~~al~a~~~~~~~~~~~~G~~-~~~~~vi~~~-~h~~~~~~~~~~G~---~v~~v~~~~~~~~~d~~~  179 (452)
T 2dgk_A          105 VGTNTIGSSEACMLGGMAMKWRWRKRMEAAGKP-TDKPNLVCGP-VQICWHKFARYWDV---ELREIPMRPGQLFMDPKR  179 (452)
T ss_dssp             EEEEESSHHHHHHHHHHHHHHHHHHHHHHTTCC-CSCCEEEESS-CCHHHHHHHHHTTC---EEEECCCBTTBCSCCHHH
T ss_pred             ceEEeCCHHHHHHHHHHHHHHHHHHHHHhcCCC-CCCcEEEECC-CcHHHHHHHHHcCc---eEEEEecCCCCCeECHHH
Confidence            589999999999999988875322112223432 1234788898 99999999999999   799999887 78999999


Q ss_pred             HHHHHHHhhhcCCCcEEEEEeccCCccccccCHHHHHHHHHHc------CCEEEEeccccccccc--ccchhhhhcCCCC
Q psy14299         83 LEQTIQTSLAEKKIPLFVNATAGTTVLGAFDPLDEIATVCEKY------DLWMHVDACWGGSLIF--SEKYSFVLKGINR  154 (448)
Q Consensus        83 Le~~l~~~~~~~~~~~lVv~~~~~t~tG~~~~l~~I~~ia~~~------g~~l~VD~A~~~~~~~--~~~~~~~~~~~~~  154 (448)
                      |+++|++      +|++|++++++|++|.++|+++|+++|++|      |+|+|||+||+++..+  .+.....+ .+..
T Consensus       180 l~~~i~~------~t~~v~~~~~~n~tG~~~~l~~I~~ia~~~~~~~~~~~~l~vD~a~~~~~~~~~~~~~~~~~-~~~~  252 (452)
T 2dgk_A          180 MIEACDE------NTIGVVPTFGVTYTGNYEFPQPLHDALDKFQADTGIDIDMHIDAASGGFLAPFVAPDIVWDF-RLPR  252 (452)
T ss_dssp             HHHHCCT------TEEEEECBBSCTTTCBBCCHHHHHHHHHHHHHHHCCCCCEEEECTTGGGTHHHHCTTCCCST-TSTT
T ss_pred             HHHHHhh------CCEEEEEEcCCcCCcccCCHHHHHHHHHHHhhccCCCCcEEEEcccHHHHHHhhCccchhhc-CCCC
Confidence            9999965      478999999999999999999999999996      9999999999987652  12111112 2446


Q ss_pred             ccEEEECCccccCCCCceEEEEEeccchhhhhccCCcccccccCcccccccCCCCCcccCCCCc-hhHHHHHHHHHhChH
Q psy14299        155 ANSVSWNPHKMLGAPLQCSILLIKEKGLLHQANATAATYLFQQDKFYDVSFDTGDKSVQCGRKV-DAFKLWLMWKARGNL  233 (448)
Q Consensus       155 aD~~~~s~hK~l~~P~g~G~l~vr~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~g~~  233 (448)
                      +|++++++|||+++|.++|+++++++..+...+...+.|+...         ...+++++++++ ..+.+|++++.+   
T Consensus       253 ~d~~~~~~hK~~~~~~~~G~~~~~~~~~~~~~~~~~~~~~~~~---------~~~~~~~~~r~~~~~~~~~aal~~l---  320 (452)
T 2dgk_A          253 VKSISASGHKFGLAPLGCGWVIWRDEEALPQELVFNVDYLGGQ---------IGTFAINFSRPAGQVIAQYYEFLRL---  320 (452)
T ss_dssp             EEEEEEETTTTTCCCSSCEEEEESSGGGSCGGGCEEECCTTCC---------EEECCSCCSCBCHHHHHHHHHHHHH---
T ss_pred             CcEEEECcccccCCCCCeEEEEEcCHHHHHHHhccCccccCCC---------CCCcccCCCChhHHHHHHHHHHHHH---
Confidence            8999999999999999999999987654433322334554311         112234455554 344455444444   


Q ss_pred             HHHHHHHHhhhhccCCCccchhhhhhhhhhhhhhhhhhhhhhhccccccccccCCCCCccccccchhhHHHHHHHHHhcC
Q psy14299        234 GFRHFVDNAVDCSRGSMTFSTLLCFDLQGLLHQANATAATYLFQQDKFYDVSFDTGDKSVQCGRKVDAFKLWLMWKARGN  313 (448)
Q Consensus       234 g~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  313 (448)
                                                                                                    +.
T Consensus       321 ------------------------------------------------------------------------------g~  322 (452)
T 2dgk_A          321 ------------------------------------------------------------------------------GR  322 (452)
T ss_dssp             ------------------------------------------------------------------------------HH
T ss_pred             ------------------------------------------------------------------------------hH
Confidence                                                                                          44


Q ss_pred             ccHHHHHHHHHHHHHHHHHHhhcCCCeEEeccC----CceeeEEEEeeccCCCccccchhhhhhhhhh-hHHHHHHHHhC
Q psy14299        314 LGFRHFVDNAVDCSRYFLSQISQRPGFRLVIPE----FQCTNICFWFIPVSLRDKVEDETWWSTLSKV-APRIKEKLVLG  388 (448)
Q Consensus       314 ~G~~~~~~~~~~l~~~~~~~L~~~pg~~l~~~~----~~~~~v~f~~~~~~~~~~~~~~~~~~~~~~~-~~~i~~~L~~~  388 (448)
                      +|++++.++..++++++.+.|+++|+++++ .+    +..++++|++.+....             .. ..++.+.|.++
T Consensus       323 ~g~~~~~~~~~~~a~~l~~~L~~~~~~~~~-~~~~~~~~~~~v~f~~~~~~~~-------------~~~~~~l~~~L~~~  388 (452)
T 2dgk_A          323 EGYTKVQNASYQVAAYLADEIAKLGPYEFI-CTGRPDEGIPAVCFKLKDGEDP-------------GYTLYDLSERLRLR  388 (452)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHTTSSEEEE-EECCTTTBSSEEEEEECTTCCC-------------SCCHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhCCCeEEe-cCCCCCCCeEEEEEEecCcccc-------------cCCHHHHHHHHHhc
Confidence            555667777888899999999999899997 44    5678899987532100             01 14788999999


Q ss_pred             CcEEEE---eeecCCcccccEEEEEecCCCCCCHHHHHHHHHHHHHHHHHhHH
Q psy14299        389 GTLMIG---YQPLQHRNLHNFFRLVTTCHPASSRQDMDYAIDQIELRGAEVDL  438 (448)
Q Consensus       389 g~~~~~---~~~~~g~~~~~~lRis~~~~~~~t~edid~l~~al~~~~~~~~~  438 (448)
                      |+.+..   +....+.   .++|++++  .++|++|+|+++++|+++.+.+..
T Consensus       389 Gi~v~~~~~~~~~~~~---~~lRis~~--~~~t~e~id~li~~l~~~~~~~~~  436 (452)
T 2dgk_A          389 GWQVPAFTLGGEATDI---VVMRIMCR--RGFEMDFAELLLEDYKASLKYLSD  436 (452)
T ss_dssp             TCBCCEEECSTTCTTC---EEEEEECC--TTCCHHHHHHHHHHHHHHHHHHHH
T ss_pred             CCeeeeeeCCcccCCe---EEEEEEec--CCCCHHHHHHHHHHHHHHHHHHHh
Confidence            963211   2222233   69999994  677899999999999999877654

>3hbx_A GAD 1, glutamate decarboxylase 1; calmodulin-binding, lyase, pyridoxal phosphate; HET: LLP; 2.67A {Arabidopsis thaliana}

Probab=100.00  E-value=1.4e-33  Score=295.88  Aligned_cols=317  Identities=16%  Similarity=0.141  Sum_probs=235.5

Q ss_pred             ccEEEeCcHHHHHHHHHHHHHHhcCCcccccCCCCCCCeEEEecCCCchHHHHHHHHhCCCCCcEEEEecCCC-CCcCHH
Q psy14299          3 LKPFLLPGGSISNMYSICLARYRLDPDTKRKGLSHLPPLCMFTSEDSHYSMLKAAHWLGIGMDNVIRVKTNER-GQMICS   81 (448)
Q Consensus         3 ~~g~~t~ggT~an~~al~~a~~~~~~~~~~~G~~~~~~~~Vl~~~~~H~s~~~~~~~~g~~~~~v~~v~~~~~-g~id~e   81 (448)
                      ..|++|+|||++|++++.+++.++.++.++.|.. ..+..|+++..+|+++.+++++.|+   .++.+|++++ +.+|++
T Consensus       118 ~~g~~t~ggtea~~~a~~a~~~~~~~~~~~~G~~-~~~~~vi~~~~~h~s~~~~~~~~G~---~~~~v~~~~~~~~~d~~  193 (502)
T 3hbx_A          118 AVGVGTVGSSEAIMLAGLAFKRKWQNKRKAEGKP-VDKPNIVTGANVQVCWEKFARYFEV---ELKEVKLSEGYYVMDPQ  193 (502)
T ss_dssp             CEEEEESSHHHHHHHHHHHHHHHHHHHHHHTTCC-CSCCEEEEETTCCHHHHHHHHHTTC---EEEEECCBTTBCSCCHH
T ss_pred             CcceecCcHHHHHHHHHHHHHHHHhHHHHhcCCC-CCCcEEEEcCCchHHHHHHHHHcCc---eeEEEecCCCcCcCCHH
Confidence            3578999999999999988876543323333432 1233789999999999999999999   7899998876 899999


Q ss_pred             HHHHHHHHhhhcCCCcEEEEEeccCCccccccCHHHHHHHHHHc------CCEEEEeccccccccc--ccchhhhhcCCC
Q psy14299         82 FLEQTIQTSLAEKKIPLFVNATAGTTVLGAFDPLDEIATVCEKY------DLWMHVDACWGGSLIF--SEKYSFVLKGIN  153 (448)
Q Consensus        82 ~Le~~l~~~~~~~~~~~lVv~~~~~t~tG~~~~l~~I~~ia~~~------g~~l~VD~A~~~~~~~--~~~~~~~~~~~~  153 (448)
                      +|++++++      +|++|++++++|++|.++|+++|+++|+++      |+|+|||+||+++..+  .+..+..+. +.
T Consensus       194 ~l~~~i~~------~t~~v~~~~~~n~tG~~~~l~~I~~ia~~~~~~~~~~~~l~VD~A~~~~~~p~~~~~~~~~~~-~~  266 (502)
T 3hbx_A          194 QAVDMVDE------NTICVAAILGSTLNGEFEDVKLLNDLLVEKNKETGWDTPIHVDAASGGFIAPFLYPELEWDFR-LP  266 (502)
T ss_dssp             HHHHHCCT------TEEEEEEEBSCTTTCCBCCHHHHHHHHHHHHHHHCCCCCEEEECTTGGGTHHHHCTTCCCSTT-ST
T ss_pred             HHHHHHhh------CCEEEEEecCCCCCCcccCHHHHHHHHHHhhhccCCCCeEEEECCccchhhhhhCcccccccC-CC
Confidence            99999965      488999999999999999999999999999      9999999999977642  232222222 34


Q ss_pred             CccEEEECCccccCCCCceEEEEEeccchhhhhccCCcccccccCcccccccCCCCCcccCCCCc-hhHHHHHHHHHhCh
Q psy14299        154 RANSVSWNPHKMLGAPLQCSILLIKEKGLLHQANATAATYLFQQDKFYDVSFDTGDKSVQCGRKV-DAFKLWLMWKARGN  232 (448)
Q Consensus       154 ~aD~~~~s~hK~l~~P~g~G~l~vr~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~g~  232 (448)
                      .+|++++++|||+++|.|+|+++++++..+...+...+.|+....         ..+.+..+++. ..+.+|        
T Consensus       267 ~~D~v~~s~hK~l~~p~g~G~~~~~~~~~l~~~~~~~~~yl~~~~---------~~~~~~~sr~~~~~~a~~--------  329 (502)
T 3hbx_A          267 LVKSINVSGHKYGLVYAGIGWVIWRNKEDLPEELIFHINYLGADQ---------PTFTLNFSKGSSQVIAQY--------  329 (502)
T ss_dssp             TEEEEEEETTTTTCCCSSCEEEEESSGGGSCGGGCEEECSSSSCE---------EECCSCCSCBSHHHHHHH--------
T ss_pred             CceEEEECcccccCCCCCeEEEEEeCHHHhhHHhccCcccccCCC---------CCccccCCchHHHHHHHH--------
Confidence            789999999999999999999999887665544444455654321         11223344443 233344        


Q ss_pred             HHHHHHHHHhhhhccCCCccchhhhhhhhhhhhhhhhhhhhhhhccccccccccCCCCCccccccchhhHHHHHHHHHhc
Q psy14299        233 LGFRHFVDNAVDCSRGSMTFSTLLCFDLQGLLHQANATAATYLFQQDKFYDVSFDTGDKSVQCGRKVDAFKLWLMWKARG  312 (448)
Q Consensus       233 ~g~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  312 (448)
                                                                                               .+++.++
T Consensus       330 -------------------------------------------------------------------------~al~~lg  336 (502)
T 3hbx_A          330 -------------------------------------------------------------------------YQLIRLG  336 (502)
T ss_dssp             -------------------------------------------------------------------------HHHHHHH
T ss_pred             -------------------------------------------------------------------------HHHHHHH
Confidence                                                                                     4444455


Q ss_pred             CccHHHHHHHHHHHHHHHHHHhhcCCCeEEeccC-CceeeEEEEeeccC-CCccccchhhhhhhhhhhHHHHHHHHhCCc
Q psy14299        313 NLGFRHFVDNAVDCSRYFLSQISQRPGFRLVIPE-FQCTNICFWFIPVS-LRDKVEDETWWSTLSKVAPRIKEKLVLGGT  390 (448)
Q Consensus       313 ~~G~~~~~~~~~~l~~~~~~~L~~~pg~~l~~~~-~~~~~v~f~~~~~~-~~~~~~~~~~~~~~~~~~~~i~~~L~~~g~  390 (448)
                      .+|++++.++..++++++.+.|+++++|+++ .+ +..++++|++.+.. ++               ..++.+.|.++|+
T Consensus       337 ~~g~~~~~~~~~~~a~~l~~~L~~~~~~~~~-~~~~~~~~v~f~~~~~~~~~---------------~~~l~~~L~~~Gi  400 (502)
T 3hbx_A          337 HEGYRNVMENCRENMIVLREGLEKTERFNIV-SKDEGVPLVAFSLKDSSCHT---------------EFEISDMLRRYGW  400 (502)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHTTTCEEEC-SCSSSSSEEEEEESSCSSCC---------------HHHHHHHHHTTTC
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhCCCEEEE-eCCCCceEEEEEecCCCcCC---------------HHHHHHHHHhCCc
Confidence            5566667778888899999999999889998 65 68899999875321 11               1378899999996


Q ss_pred             EEEEeeecCCcccccEEEEEecCCCCCCHHHHHHHHHHHHHHHHHhHH
Q psy14299        391 LMIGYQPLQHRNLHNFFRLVTTCHPASSRQDMDYAIDQIELRGAEVDL  438 (448)
Q Consensus       391 ~~~~~~~~~g~~~~~~lRis~~~~~~~t~edid~l~~al~~~~~~~~~  438 (448)
                      ++.....+.......++|+++  +..+|++|+++|+++|+++.+.+..
T Consensus       401 ~v~~~~~p~~~~~~~~lRisv--~~~~t~edid~li~~L~~~l~~l~~  446 (502)
T 3hbx_A          401 IVPAYTMPPNAQHITVLRVVI--REDFSRTLAERLVIDIEKVMRELDE  446 (502)
T ss_dssp             BCCEEECCTTCTTCEEEEEEC--CTTCCHHHHHHHHHHHHHHHHHHHT
T ss_pred             EEeeccCCcccCCceEEEEEe--CCCCCHHHHHHHHHHHHHHHHHHHh
Confidence            543322222111127899999  6899999999999999999887654

>2z67_A O-phosphoseryl-tRNA(SEC) selenium transferase; selenocysteine biosynthesis, seven-stranded BETE-strand, PYR 5'-phosphate; HET: PLP; 2.50A {Methanococcus maripaludis} SCOP: c.67.1.9

Probab=99.96  E-value=7.8e-29  Score=256.69  Aligned_cols=288  Identities=16%  Similarity=0.154  Sum_probs=202.8

Q ss_pred             EEEeCcHH-HHHHHHHHHHHHhcCCcccccCCCCCCCeEEEecCCCchHHHHHHHHhCCCCCcEEEEec---CCCCCcCH
Q psy14299          5 PFLLPGGS-ISNMYSICLARYRLDPDTKRKGLSHLPPLCMFTSEDSHYSMLKAAHWLGIGMDNVIRVKT---NERGQMIC   80 (448)
Q Consensus         5 g~~t~ggT-~an~~al~~a~~~~~~~~~~~G~~~~~~~~Vl~~~~~H~s~~~~~~~~g~~~~~v~~v~~---~~~g~id~   80 (448)
                      ++||+||| ++|+.++.+++...            +++.|+++..+|+|+.++++..|+   +++.++.   ++++.+|+
T Consensus       152 ~~~t~g~te~a~~~al~~~~~~~------------~~~~vi~~~~~h~s~~~~~~~~G~---~~~~v~~~~~~~~~~~d~  216 (456)
T 2z67_A          152 AIATPISTGMSISLCLSAARKKY------------GSNVVIYPYASHKSPIKAVSFVGM---NMRLVETVLDGDRVYVPV  216 (456)
T ss_dssp             EEEESSCHHHHHHHHHHHHHHHH------------CCCEEEEECCCCHHHHHHHHHTTC---EEEEECCEEETTEEECCH
T ss_pred             EEEeCcHHHHHHHHHHHHHHHhc------------CCCEEEEECCCcHHHHHHHHHcCC---CceEEEEeccCCCCCcCH
Confidence            89999999 67777877765521            344577777899999999999998   6777775   67789999


Q ss_pred             HHHHHHHHHhhhcCCCcEEEEEeccCCccccccCHHHHHHHHHHcCCEEEEecccccccc-cccchhhhhcCCCCccEEE
Q psy14299         81 SFLEQTIQTSLAEKKIPLFVNATAGTTVLGAFDPLDEIATVCEKYDLWMHVDACWGGSLI-FSEKYSFVLKGINRANSVS  159 (448)
Q Consensus        81 e~Le~~l~~~~~~~~~~~lVv~~~~~t~tG~~~~l~~I~~ia~~~g~~l~VD~A~~~~~~-~~~~~~~~~~~~~~aD~~~  159 (448)
                      ++|+++|++.... .++.+|+++.++|++|.++|+++|+++|+++|+|+|||+||+.... ..+.......+  .+|+++
T Consensus       217 ~~l~~~i~~~~~~-~~~~~vv~~~~nn~tG~i~~l~~I~~la~~~g~~v~vD~A~~~~~~g~~~~~~~~~~~--~~D~~~  293 (456)
T 2z67_A          217 EDIENAIKKEIEL-GNRPCVLSTLTFFPPRNSDDIVEIAKICENYDIPHIINGAYAIQNNYYLEKLKKAFKY--RVDAVV  293 (456)
T ss_dssp             HHHHHHHHHHHHT-TCCEEEEEESSCCTTBCCCCHHHHHHHHHHHTCCEEEECTTTTTCHHHHHHHHHHHTS--CCSEEE
T ss_pred             HHHHHHHHHHhhC-CCeEEEEEeCCCCCCCCcCCHHHHHHHHHHcCCcEEEECcchHHHHHhhHHHHHhhCC--CCCEEE
Confidence            9999999432111 2577888899999999999999999999999999999999886554 22221111222  589999


Q ss_pred             ECCccccCCCCceEEEEEeccchhhhhccCCcccccccCcccccccCCCCCcccCCCCchhHHHHHHHHHhChHHHHHHH
Q psy14299        160 WNPHKMLGAPLQCSILLIKEKGLLHQANATAATYLFQQDKFYDVSFDTGDKSVQCGRKVDAFKLWLMWKARGNLGFRHFV  239 (448)
Q Consensus       160 ~s~hK~l~~P~g~G~l~vr~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~g~~~~i  239 (448)
                      +|+|||+++|.|+|++++++++++...   .+.|....                   ...                    
T Consensus       294 ~s~hK~~~~p~g~G~l~~~~~~~~~~l---~~~~~g~~-------------------~~~--------------------  331 (456)
T 2z67_A          294 SSSDKNLLTPIGGGLVYSTDAEFIKEI---SLSYPGRA-------------------SAT--------------------  331 (456)
T ss_dssp             EEHHHHHCCCSSCEEEEESCHHHHHHH---HTTSCSCB-------------------CSH--------------------
T ss_pred             EcCCCCcCCCCCeEEEEEcCHHHHhhc---CcCCCCCC-------------------CCC--------------------
Confidence            999999999999999999766554432   12222110                   000                    


Q ss_pred             HHhhhhccCCCccchhhhhhhhhhhhhhhhhhhhhhhccccccccccCCCCCccccccchhhHHHHHHHHHhcCccHHHH
Q psy14299        240 DNAVDCSRGSMTFSTLLCFDLQGLLHQANATAATYLFQQDKFYDVSFDTGDKSVQCGRKVDAFKLWLMWKARGNLGFRHF  319 (448)
Q Consensus       240 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~  319 (448)
                                                                                  ..+.++.++..++.+|++++
T Consensus       332 ------------------------------------------------------------~~~~~~aal~~l~~~~~~~~  351 (456)
T 2z67_A          332 ------------------------------------------------------------PVVNTLVSLLSMGSKNYLEL  351 (456)
T ss_dssp             ------------------------------------------------------------HHHHHHHHHHHHHHHHHHHH
T ss_pred             ------------------------------------------------------------HHHHHHHHHHHHHHHHHHHH
Confidence                                                                        02223344455556677888


Q ss_pred             HHHHHHHHHHHHHHhhcCC---CeEEeccCCceeeEEEEeeccCCCccccchhhhhhhhhhhHHHHHHHHhCCcEEEEee
Q psy14299        320 VDNAVDCSRYFLSQISQRP---GFRLVIPEFQCTNICFWFIPVSLRDKVEDETWWSTLSKVAPRIKEKLVLGGTLMIGYQ  396 (448)
Q Consensus       320 ~~~~~~l~~~~~~~L~~~p---g~~l~~~~~~~~~v~f~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~L~~~g~~~~~~~  396 (448)
                      .++..++++++.+.|+++|   |+.++ . +. ++++|.+..++.                ..++.+.|.++|+..+...
T Consensus       352 ~~~~~~~~~~l~~~L~~~~~~~g~~v~-~-~~-~~v~~~~~~~~~----------------~~~l~~~L~~~gi~~~rv~  412 (456)
T 2z67_A          352 VKNQKNSKKLLDELLNDLSKKTGGKFL-D-VE-SPIASCISVNSD----------------PVEIAAKLYNLRVTGPRGI  412 (456)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHSSCCBC-C-CC-CSSEEEEECSSC----------------HHHHHHHHHHTTEESCEEE
T ss_pred             HHHHHHHHHHHHHHHHhcccccCCEec-C-CC-CeEEEEEecccH----------------HHHHHHHHHHcCCCcceEE
Confidence            8899999999999999987   87765 3 44 788886531111                1267788888873111111


Q ss_pred             --------ecCCcccccEEEEEecCCCCCCHHHHHHHHHHHHHHH
Q psy14299        397 --------PLQHRNLHNFFRLVTTCHPASSRQDMDYAIDQIELRG  433 (448)
Q Consensus       397 --------~~~g~~~~~~lRis~~~~~~~t~edid~l~~al~~~~  433 (448)
                              ........+++|+|+  ++++|++|||+++++|+++.
T Consensus       413 ~~~g~f~G~~~~~~~~~~vr~s~--~~~~t~eeid~~l~~L~~~~  455 (456)
T 2z67_A          413 KKTDHFGNCYLGTYTHDYIVMNA--AIGVRTEDIVNSVSKLEKIL  455 (456)
T ss_dssp             CTTCHHHHTCSSCCSCCEEEEEC--CTTCCHHHHHHHHHHHHTC-
T ss_pred             eecCccccccccccCcchhhhhh--hcCCCHHHHHHHHHHHHHHh
Confidence                    000011136899999  78999999999999998653

>3mad_A Sphingosine-1-phosphate lyase; carboxy-lyase activity, pyridoxal phosphate; HET: LLP; 2.00A {Symbiobacterium thermophilum} PDB: 3maf_A* 3mau_A* 3mbb_A*

Probab=99.96  E-value=2.2e-28  Score=256.83  Aligned_cols=302  Identities=19%  Similarity=0.204  Sum_probs=220.3

Q ss_pred             cEEEeCcHHHHHHHHHHHHHHhcCCcccccCCCCCCCeEEEecCCCchHHHHHHHHhCCCCCcEEEEecCCCCCcCHHHH
Q psy14299          4 KPFLLPGGSISNMYSICLARYRLDPDTKRKGLSHLPPLCMFTSEDSHYSMLKAAHWLGIGMDNVIRVKTNERGQMICSFL   83 (448)
Q Consensus         4 ~g~~t~ggT~an~~al~~a~~~~~~~~~~~G~~~~~~~~Vl~~~~~H~s~~~~~~~~g~~~~~v~~v~~~~~g~id~e~L   83 (448)
                      +|++|+|||++|.+++.+++.+..   ++.|   .+++.|+++..+|.++.++++..|+   +++.+|.++++.+|+++|
T Consensus       162 ~~~~t~ggt~a~~~al~a~~~~g~---~~~g---~~~d~Vi~~~~~~~~~~~~~~~~G~---~v~~v~~~~~~~~d~~~L  232 (514)
T 3mad_A          162 CGTVTSGGTESLLLAMKTYRDWAR---ATKG---ITAPEAVVPVSAHAAFDKAAQYFGI---KLVRTPLDADYRADVAAM  232 (514)
T ss_dssp             EEEEESSHHHHHHHHHHHHHHHHH---HHHC---CSSCEEEEETTSCTHHHHHHHHHTC---EEEEECBCTTSCBCHHHH
T ss_pred             ceEEcCcHHHHHHHHHHHHHHHhh---hhcC---CCCCeEEEeCccchHHHHHHHHcCC---eeEEeeeCCCCCCCHHHH
Confidence            569999999999999998876521   1122   1346799999999999999999999   799999999999999999


Q ss_pred             HHHHHHhhhcCCCcEEEEEeccCCccccccCHHHHHHHHHHcCCEEEEecccccccccc--------cchhhhhcCCCCc
Q psy14299         84 EQTIQTSLAEKKIPLFVNATAGTTVLGAFDPLDEIATVCEKYDLWMHVDACWGGSLIFS--------EKYSFVLKGINRA  155 (448)
Q Consensus        84 e~~l~~~~~~~~~~~lVv~~~~~t~tG~~~~l~~I~~ia~~~g~~l~VD~A~~~~~~~~--------~~~~~~~~~~~~a  155 (448)
                      ++++++      ++++|++++++|++|.++|+++|.++|++||+|+|+|+||+++..+.        +....   ...++
T Consensus       233 e~~i~~------~~~~v~~~~~~nptG~~~~l~~i~~la~~~~i~livDea~~~~~~~~~~~~g~~~~~~~~---~~~g~  303 (514)
T 3mad_A          233 REAITP------NTVVVAGSAPGYPHGVVDPIPEIAALAAEHGIGCHVDACLGGFILPWAERLGYPVPPFDF---RLEGV  303 (514)
T ss_dssp             HHHCCT------TEEEEEEETTCTTTCCCCCHHHHHHHHHHHTCEEEEECTTTTTTHHHHHHTTCCCCCCST---TSTTC
T ss_pred             HHHhcc------CCEEEEEeCCCCCCccccCHHHHHHHHHHhCCeEEEecccccccchhHHhcCCCCCcccc---cCCCC
Confidence            999964      58899999999999999999999999999999999999999876531        11111   12357


Q ss_pred             cEEEECCccccCCCCceEEEEEeccchhhhhccCCcccccccCcccccccCCCCCcccCCCCchhHHHHHHHHHhChHHH
Q psy14299        156 NSVSWNPHKMLGAPLQCSILLIKEKGLLHQANATAATYLFQQDKFYDVSFDTGDKSVQCGRKVDAFKLWLMWKARGNLGF  235 (448)
Q Consensus       156 D~~~~s~hK~l~~P~g~G~l~vr~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~g~  235 (448)
                      |++++++||++++|.++|+++++++............|....         +....+.+++..                 
T Consensus       304 d~~~~s~~K~l~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~---------~~~~~~~gs~~~-----------------  357 (514)
T 3mad_A          304 TSVSADTHKYGYGAKGTSVILYRRPDLLHYQYFIAADWPGGL---------YFSPTFAGSRPG-----------------  357 (514)
T ss_dssp             CEEEECTTTTTCCCSSCEEEEESSHHHHTTTCEEESSCTTCS---------EEESSSCSSCCH-----------------
T ss_pred             cEEEECchhccCCCCCeEEEEEeCHHHhccccccccccCCCc---------ccCCccCCCCch-----------------
Confidence            999999999999999999999988654332111111111000         001111122221                 


Q ss_pred             HHHHHHhhhhccCCCccchhhhhhhhhhhhhhhhhhhhhhhccccccccccCCCCCccccccchhhHHHHHHHHHhcCcc
Q psy14299        236 RHFVDNAVDCSRGSMTFSTLLCFDLQGLLHQANATAATYLFQQDKFYDVSFDTGDKSVQCGRKVDAFKLWLMWKARGNLG  315 (448)
Q Consensus       236 ~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G  315 (448)
                                                                                     ...++++.+++.++.+|
T Consensus       358 ---------------------------------------------------------------~~~~a~~aal~~l~~~~  374 (514)
T 3mad_A          358 ---------------------------------------------------------------ALSATAWAAMLSLGEEG  374 (514)
T ss_dssp             ---------------------------------------------------------------HHHHHHHHHHHHHHHHH
T ss_pred             ---------------------------------------------------------------HHHHHHHHHHHHHhHHH
Confidence                                                                           12334455566666677


Q ss_pred             HHHHHHHHHHHHHHHHHHhhcCCCeEEeccCCceeeEEEEeeccCCCccccchhhhhhhhhhhHHHHHHHHhCCcEEEEe
Q psy14299        316 FRHFVDNAVDCSRYFLSQISQRPGFRLVIPEFQCTNICFWFIPVSLRDKVEDETWWSTLSKVAPRIKEKLVLGGTLMIGY  395 (448)
Q Consensus       316 ~~~~~~~~~~l~~~~~~~L~~~pg~~l~~~~~~~~~v~f~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~L~~~g~~~~~~  395 (448)
                      ++++.++..++++++.+.|+++|+++++ .++ .+++.|.  +.+.+               ..++.+.|.++|+++ ..
T Consensus       375 ~~~~~~~~~~~~~~l~~~L~~~~g~~~~-~~~-~~~~~~~--~~~~~---------------~~~l~~~L~~~Gi~v-~g  434 (514)
T 3mad_A          375 YLDATRRILQAADRLKAGVRAIPSLKIL-GDP-LWVIAVA--SDELN---------------IYQVMEEMAGRGWRL-NG  434 (514)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHTSTTCEES-SCC-SSEEEEE--CSSSC---------------HHHHHHHHHTTTCBC-EE
T ss_pred             HHHHHHHHHHHHHHHHHHHhhCCCeEEe-CCC-eEEEEEe--CCCCC---------------HHHHHHHHHhcCCEe-cc
Confidence            7788888899999999999999999987 444 3444443  22221               237889999999544 22


Q ss_pred             eecCCcccccEEEEEecCCCCCCHHHHHHHHHHHHHHHHHhHH
Q psy14299        396 QPLQHRNLHNFFRLVTTCHPASSRQDMDYAIDQIELRGAEVDL  438 (448)
Q Consensus       396 ~~~~g~~~~~~lRis~~~~~~~t~edid~l~~al~~~~~~~~~  438 (448)
                      . ..    ++.+|++++ +..++++|+++++++|+++.+++..
T Consensus       435 ~-~~----~~~~Ri~~~-~~~~~~e~i~~~l~~L~~~l~~~~~  471 (514)
T 3mad_A          435 L-HR----PPAFHVALT-LRHTEPGVVDRFLADLQDAVAQVRA  471 (514)
T ss_dssp             E-TT----TTEEEEECC-GGGGSTTHHHHHHHHHHHHHHHHHH
T ss_pred             C-CC----CCeEEEEEe-cCCCCHHHHHHHHHHHHHHHHHHHh
Confidence            2 11    268999996 5777889999999999999887654

>3mc6_A Sphingosine-1-phosphate lyase; carboxy-lyase activity, pyridoxyl phosphate; HET: LLP; 3.15A {Saccharomyces cerevisiae}

Probab=99.96  E-value=1.1e-28  Score=257.70  Aligned_cols=301  Identities=17%  Similarity=0.210  Sum_probs=220.9

Q ss_pred             ccEEEeCcHHHHHHHHHHHHHHhcCCcccccCCCCCCCeEEEecCCCchHHHHHHHHhCCCCCcEEEEecCC-CCCcCHH
Q psy14299          3 LKPFLLPGGSISNMYSICLARYRLDPDTKRKGLSHLPPLCMFTSEDSHYSMLKAAHWLGIGMDNVIRVKTNE-RGQMICS   81 (448)
Q Consensus         3 ~~g~~t~ggT~an~~al~~a~~~~~~~~~~~G~~~~~~~~Vl~~~~~H~s~~~~~~~~g~~~~~v~~v~~~~-~g~id~e   81 (448)
                      ..+++|+|||++|.+++.+++++..   ++.|+   +++.|+++...|.++.++++..|+   +++.+|.++ ++.+|++
T Consensus       127 ~~~~~~~ggt~a~~~a~~a~~~~~~---~~~g~---~~~~Vi~~~~~h~~~~~~~~~~G~---~~~~v~~~~~~~~~d~~  197 (497)
T 3mc6_A          127 GCGTTTSGGTESLLLACLSAKMYAL---HHRGI---TEPEIIAPVTAHAGFDKAAYYFGM---KLRHVELDPTTYQVDLG  197 (497)
T ss_dssp             CCEEEESSHHHHHHHHHHHHHHHHH---HHSCC---SSCEEEEETTSCHHHHHHHHHSCC---EEEEECBCTTTCSBCTT
T ss_pred             CeEEEcCcHHHHHHHHHHHHHHHHH---hcCCC---CCceEEEeCCccHHHHHHHHHcCC---eEEEEecCcccCcCCHH
Confidence            3689999999999999998876421   11232   345799999999999999999999   799999987 7899999


Q ss_pred             HHHHHHHHhhhcCCCcEEEEEeccCCccccccCHHHHHHHHHHcCCEEEEecccccccccc---------cchhhhhcCC
Q psy14299         82 FLEQTIQTSLAEKKIPLFVNATAGTTVLGAFDPLDEIATVCEKYDLWMHVDACWGGSLIFS---------EKYSFVLKGI  152 (448)
Q Consensus        82 ~Le~~l~~~~~~~~~~~lVv~~~~~t~tG~~~~l~~I~~ia~~~g~~l~VD~A~~~~~~~~---------~~~~~~~~~~  152 (448)
                      +|++++++      ++++|++++++|++|.++|+++|+++|++||+|+|||+||+++..++         +....   ..
T Consensus       198 ~l~~~i~~------~~~~v~~~~p~nptG~~~~l~~i~~la~~~g~~livD~a~~~~~~~f~~~~~~~~~~~~~~---~~  268 (497)
T 3mc6_A          198 KVKKFINK------NTVLLVGSAPNFPHGIADDIEGLGKIAQKYKLPLHVDSCLGSFIVSFMEKAGYKNLPLLDF---RV  268 (497)
T ss_dssp             TTGGGCCS------SEEEEEEETTCTTTCCCCSCTTTTTHHHHTTCCEEEETTTTHHHHGGGTTTTCCSCCCCST---TS
T ss_pred             HHHHHHhh------CCEEEEEECCCCCCCcCCCHHHHHHHHHHhCCEEEEECcchhhhhhhhhhhcccCCccccc---cC
Confidence            99999854      48899999999999999999999999999999999999999765431         11111   12


Q ss_pred             CCccEEEECCccccCCCCceEEEEEeccchhhhhccCCcccccccCcccccccCCCCCcccCCCCchhHHHHHHHHHhCh
Q psy14299        153 NRANSVSWNPHKMLGAPLQCSILLIKEKGLLHQANATAATYLFQQDKFYDVSFDTGDKSVQCGRKVDAFKLWLMWKARGN  232 (448)
Q Consensus       153 ~~aD~~~~s~hK~l~~P~g~G~l~vr~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~  232 (448)
                      .++|+++.++||++++|.++|+++++++.+........+.|....         ++...+.+++. .             
T Consensus       269 ~g~d~~~~s~~K~l~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~---------~~~~~~~g~~~-~-------------  325 (497)
T 3mc6_A          269 PGVTSISCDTHKYGFAPKGSSVIMYRNSDLRMHQYYVNPAWTGGL---------YGSPTLAGSRP-G-------------  325 (497)
T ss_dssp             TTCCEEEEETTTTTCCCSSCEEEECSSHHHHTTTSCCBTTCTTSC---------BCCSSSCSSCB-H-------------
T ss_pred             CCCcEEEECchhhcCCCCCceeEEecCHHHHhhhhcccccccCCC---------cCCcCcccCCc-c-------------
Confidence            357999999999999999999999987654322211112222110         11122222221 1             


Q ss_pred             HHHHHHHHHhhhhccCCCccchhhhhhhhhhhhhhhhhhhhhhhccccccccccCCCCCccccccchhhHHHHHHHHHhc
Q psy14299        233 LGFRHFVDNAVDCSRGSMTFSTLLCFDLQGLLHQANATAATYLFQQDKFYDVSFDTGDKSVQCGRKVDAFKLWLMWKARG  312 (448)
Q Consensus       233 ~g~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  312 (448)
                                                                                        ...++++.+++.++
T Consensus       326 ------------------------------------------------------------------~~~~a~~aal~~l~  339 (497)
T 3mc6_A          326 ------------------------------------------------------------------AIVVGCWATMVNMG  339 (497)
T ss_dssp             ------------------------------------------------------------------HHHHHHHHHHHHHH
T ss_pred             ------------------------------------------------------------------hhHHHHHHHHHHHh
Confidence                                                                              11233445555566


Q ss_pred             CccHHHHHHHHHHHHHHHHHHhhc-CCCeEEeccCCceeeEEEEeeccCCCccccchhhhhhhhhhhHHHHHHHHhCCcE
Q psy14299        313 NLGFRHFVDNAVDCSRYFLSQISQ-RPGFRLVIPEFQCTNICFWFIPVSLRDKVEDETWWSTLSKVAPRIKEKLVLGGTL  391 (448)
Q Consensus       313 ~~G~~~~~~~~~~l~~~~~~~L~~-~pg~~l~~~~~~~~~v~f~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~L~~~g~~  391 (448)
                      .+|++++.++..++++++++.|++ +||++++ .++..++++|...  +.+               ..++.+.|.++|+.
T Consensus       340 ~~~~~~~~~~~~~~~~~l~~~L~~~~~g~~~~-~~~~~~~v~~~~~--~~~---------------~~~l~~~L~~~Gi~  401 (497)
T 3mc6_A          340 ENGYIESCQEIVGAAMKFKKYIQENIPDLDIM-GNPRYSVISFSSK--TLN---------------IHELSDRLSKKGWH  401 (497)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHSCTTCEEC-SCCCSSEEEEECT--TTT---------------HHHHHHHHHTTTCB
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhcCCCEEEe-cCCCeeEEEEeCC--CCC---------------HHHHHHHHHhCCEE
Confidence            667777788888899999999999 7999998 6777888887531  111               23788999999954


Q ss_pred             EEEeeecCCcccccEEEEEecCCCCCCHHHHHHHHHHHHHHHHHhH
Q psy14299        392 MIGYQPLQHRNLHNFFRLVTTCHPASSRQDMDYAIDQIELRGAEVD  437 (448)
Q Consensus       392 ~~~~~~~~g~~~~~~lRis~~~~~~~t~edid~l~~al~~~~~~~~  437 (448)
                       +...  ..   +..+|+++  + .+|++|+++++++|+++.+++.
T Consensus       402 -v~~~--~~---~~~~ri~~--~-~~t~e~i~~~~~~L~~~l~~~~  438 (497)
T 3mc6_A          402 -FNAL--QK---PVALHMAF--T-RLSAHVVDEICDILRTTVQELK  438 (497)
T ss_dssp             -CEEC--CS---SCCEEEEC--C-TTTTCTHHHHHHHHHHHHHHHT
T ss_pred             -EecC--CC---CCeEEEEE--e-CCCHHHHHHHHHHHHHHHHHHH
Confidence             3322  12   24689999  4 6799999999999999988764

>3f9t_A TDC, L-tyrosine decarboxylase MFNA; NP_247014.1, L-tyrosine decarboxylase MFNA (EC 4.1.1.25), ST genomics; HET: PLP; 2.11A {Methanocaldococcus jannaschii}

Probab=99.96  E-value=5e-27  Score=235.85  Aligned_cols=300  Identities=20%  Similarity=0.294  Sum_probs=218.2

Q ss_pred             cEEEeCcHHHHHHHHHHHHHHhcCCcccccCCCCCCCeEEEecCCCchHHHHHHHHhCCCCCcEEEEecCCCCCcCHHHH
Q psy14299          4 KPFLLPGGSISNMYSICLARYRLDPDTKRKGLSHLPPLCMFTSEDSHYSMLKAAHWLGIGMDNVIRVKTNERGQMICSFL   83 (448)
Q Consensus         4 ~g~~t~ggT~an~~al~~a~~~~~~~~~~~G~~~~~~~~Vl~~~~~H~s~~~~~~~~g~~~~~v~~v~~~~~g~id~e~L   83 (448)
                      .+++|+|||+++..++.+++.+.. +.+..|....+++.|+++..+|+++..+++..|.   +++.+|.++++.+|+++|
T Consensus        88 ~i~~~~ggt~a~~~~~~~~~~~~~-~~~~~~~~~~~gd~vl~~~~~~~~~~~~~~~~g~---~~~~v~~~~~~~~d~~~l  163 (397)
T 3f9t_A           88 YGHIVSGGTEANLMALRCIKNIWR-EKRRKGLSKNEHPKIIVPITAHFSFEKGREMMDL---EYIYAPIKEDYTIDEKFV  163 (397)
T ss_dssp             EEEEESCHHHHHHHHHHHHHHHHH-HHHHTTCCCCSSCEEEEETTCCTHHHHHHHHHTC---EEEEECBCTTSSBCHHHH
T ss_pred             CEEEecCcHHHHHHHHHHHHHHHH-hhhhhcccCCCCeEEEECCcchhHHHHHHHHcCc---eeEEEeeCCCCcCCHHHH
Confidence            569999999999999988776411 0111232223577899999999999999999999   899999999999999999


Q ss_pred             HHHHHHhhhcCCCcEEEEEeccCCccccccCHHHHHHHHHHcCCEEEEecccccccccccch---------hhhhcCCCC
Q psy14299         84 EQTIQTSLAEKKIPLFVNATAGTTVLGAFDPLDEIATVCEKYDLWMHVDACWGGSLIFSEKY---------SFVLKGINR  154 (448)
Q Consensus        84 e~~l~~~~~~~~~~~lVv~~~~~t~tG~~~~l~~I~~ia~~~g~~l~VD~A~~~~~~~~~~~---------~~~~~~~~~  154 (448)
                      ++++++.     ++++|++++++|++|.+.|+++|.++|++||+++|+|++|+++.......         ...+. . .
T Consensus       164 ~~~i~~~-----~~~~v~~~~~~nptG~~~~l~~i~~l~~~~~~~li~Dea~~~~~~~~~~~~~~~~~~~~~~~~~-~-~  236 (397)
T 3f9t_A          164 KDAVEDY-----DVDGIIGIAGTTELGTIDNIEELSKIAKENNIYIHVDAAFGGLVIPFLDDKYKKKGVNYKFDFS-L-G  236 (397)
T ss_dssp             HHHHHHS-----CCCEEEEEBSCTTTCCBCCHHHHHHHHHHHTCEEEEECTTGGGTGGGCCGGGCCTTCCCCCSGG-G-T
T ss_pred             HHHHhhc-----CCeEEEEECCCCCCCCCCCHHHHHHHHHHhCCeEEEEccccchhhhhccccccccccccccccc-c-c
Confidence            9999762     47899999999999999999999999999999999999999876532211         11111 1 4


Q ss_pred             ccEEEECCccccCCCCceEEEEEeccchhhhhccCCcccccccCcccccccCCCCCcccCCCCchhHHHHHHHHHhChHH
Q psy14299        155 ANSVSWNPHKMLGAPLQCSILLIKEKGLLHQANATAATYLFQQDKFYDVSFDTGDKSVQCGRKVDAFKLWLMWKARGNLG  234 (448)
Q Consensus       155 aD~~~~s~hK~l~~P~g~G~l~vr~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~g  234 (448)
                      +|++++++||++++|.++|+++++++.+.... ....+|+....          ......++..                
T Consensus       237 ~~~~~~s~~K~~~~~~~~g~~~~~~~~~~~~~-~~~~~~~~~~~----------~~~~~~~~~~----------------  289 (397)
T 3f9t_A          237 VDSITIDPHKMGHCPIPSGGILFKDIGYKRYL-DVDAPYLTETR----------QATILGTRVG----------------  289 (397)
T ss_dssp             CSEEECCTTTTTCCCSSCEEEEESSGGGGGGT-CEECTTSSSSE----------ECSSCSSCCS----------------
T ss_pred             CCeEEEccccccCCCCCceEEEEeCHHHHHhh-ccCCccccCCC----------cccccccccc----------------
Confidence            79999999999999999999999887544332 22233332211          0001111111                


Q ss_pred             HHHHHHHhhhhccCCCccchhhhhhhhhhhhhhhhhhhhhhhccccccccccCCCCCccccccchhhHHHHHHHHHhcCc
Q psy14299        235 FRHFVDNAVDCSRGSMTFSTLLCFDLQGLLHQANATAATYLFQQDKFYDVSFDTGDKSVQCGRKVDAFKLWLMWKARGNL  314 (448)
Q Consensus       235 ~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  314 (448)
                                                                                      ...+..+.++..++.+
T Consensus       290 ----------------------------------------------------------------~~~~~~~a~~~~~~~~  305 (397)
T 3f9t_A          290 ----------------------------------------------------------------FGGACTYAVLRYLGRE  305 (397)
T ss_dssp             ----------------------------------------------------------------HHHHHHHHHHHHHHHH
T ss_pred             ----------------------------------------------------------------chHHHHHHHHHHHhHH
Confidence                                                                            1122333344444556


Q ss_pred             cHHHHHHHHHHHHHHHHHHhhcCCCeEEeccCCceeeEEEEeeccCCCccccchhhhhhhhhhhHHHHHHHHhCCcEEEE
Q psy14299        315 GFRHFVDNAVDCSRYFLSQISQRPGFRLVIPEFQCTNICFWFIPVSLRDKVEDETWWSTLSKVAPRIKEKLVLGGTLMIG  394 (448)
Q Consensus       315 G~~~~~~~~~~l~~~~~~~L~~~pg~~l~~~~~~~~~v~f~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~L~~~g~~~~~  394 (448)
                      +++++.++..++++++.+.|+++ |++++ .++..+.+.|...+                   ..++.+.|.++|+ .+.
T Consensus       306 ~~~~~~~~~~~~~~~l~~~L~~~-g~~~~-~~~~~~~~~~~~~~-------------------~~~~~~~l~~~gi-~v~  363 (397)
T 3f9t_A          306 GQRKIVNECMENTLYLYKKLKEN-NFKPV-IEPILNIVAIEDED-------------------YKEVCKKLRDRGI-YVS  363 (397)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHT-TCCBS-SCCSSSEEEEECTT-------------------HHHHHHHHHHTTC-BCE
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHC-CCEEE-cCCCccEEEEEeCC-------------------HHHHHHHHHhCCe-EEe
Confidence            67778888889999999999999 98876 66677777765321                   1378889999984 444


Q ss_pred             eeecCCcccccEEEEEecCCCCCCHHHHHHHHHHHHHHHH
Q psy14299        395 YQPLQHRNLHNFFRLVTTCHPASSRQDMDYAIDQIELRGA  434 (448)
Q Consensus       395 ~~~~~g~~~~~~lRis~~~~~~~t~edid~l~~al~~~~~  434 (448)
                      +...     ++++|+++  +.++|++|+++++++|+++.+
T Consensus       364 ~~~~-----~~~~Ri~~--~~~~~~e~i~~~~~~l~~~l~  396 (397)
T 3f9t_A          364 VCNC-----VKALRIVV--MPHIKREHIDNFIEILNSIKR  396 (397)
T ss_dssp             ECSS-----SSEEEEEC--CTTCCHHHHHHHHHHHHHHC-
T ss_pred             ccCC-----CCEEEEEE--cCCCCHHHHHHHHHHHHHhhC
Confidence            4321     26899999  678999999999999998754

>3bc8_A O-phosphoseryl-tRNA(SEC) selenium transferase; disorder-order transition, phosphate-loop, pyridoxal phospha selenocysteine synthase (SECS, sepsecs); HET: LLP; 1.65A {Mus musculus} SCOP: c.67.1.9 PDB: 3bca_A* 3bcb_A*

Probab=99.95  E-value=1.9e-27  Score=243.09  Aligned_cols=203  Identities=15%  Similarity=0.157  Sum_probs=146.2

Q ss_pred             ccEEEeCcHH-HHHHHHHHHHHHhcCCcccccCCCCCCCeEEEecCCCchHHHHHHHHhCCCCCcEEEEecCCCCCcCHH
Q psy14299          3 LKPFLLPGGS-ISNMYSICLARYRLDPDTKRKGLSHLPPLCMFTSEDSHYSMLKAAHWLGIGMDNVIRVKTNERGQMICS   81 (448)
Q Consensus         3 ~~g~~t~ggT-~an~~al~~a~~~~~~~~~~~G~~~~~~~~Vl~~~~~H~s~~~~~~~~g~~~~~v~~v~~~~~g~id~e   81 (448)
                      .++++|+|+| +++.+++.++|....           +++.|++++.+|.|+.+++.++|++++.+..++.++.+.+|++
T Consensus       117 ~~~~lV~GaT~~~~a~~L~aar~~~~-----------~~~~viv~r~aHkSv~kAl~l~Gl~p~~v~~~~~~~~~~id~~  185 (450)
T 3bc8_A          117 ASCFVVPMATGMSLTLCFLTLRHKRP-----------KAKYIIWPRIDQKSCFKSMVTAGFEPVVIENVLEGDELRTDLK  185 (450)
T ss_dssp             CEEEEESSCHHHHHHHHHHHHHHHCT-----------TCCEEEEECCCCHHHHHHHHHTTCEEEEECCEEETTEEECCHH
T ss_pred             ceEEEECCHHHHHHHHHHHHcchhhc-----------CCCEEEEECCcHHHHHHHHHHcCCeeEEEEeeecCccCCcCHH
Confidence            3579999998 778888888777421           2346788899999999999999995443444444667899999


Q ss_pred             HHHHHHHHhhhcCCCcEEEEEeccCCccccccCHHHHHHHHHHcCCEEEEecccccccccccchhhhhcCC--CCccEEE
Q psy14299         82 FLEQTIQTSLAEKKIPLFVNATAGTTVLGAFDPLDEIATVCEKYDLWMHVDACWGGSLIFSEKYSFVLKGI--NRANSVS  159 (448)
Q Consensus        82 ~Le~~l~~~~~~~~~~~lVv~~~~~t~tG~~~~l~~I~~ia~~~g~~l~VD~A~~~~~~~~~~~~~~~~~~--~~aD~~~  159 (448)
                      .|+++|+++..  ..+.+|+.+.+++.+|.++||++|+++||+||+|+|||+|||+...+......  .++  +.+|+++
T Consensus       186 ~le~aI~~~~~--~~~~~Vv~t~t~~g~g~~ddl~~Ia~ia~~~gi~l~VD~A~G~~~~~~~~l~~--~a~~~~~AD~~v  261 (450)
T 3bc8_A          186 AVEAKIQELGP--EHILCLHSTTACFAPRVPDRLEELAVICANYDIPHVVNNAYGLQSSKCMHLIQ--QGARVGRIDAFV  261 (450)
T ss_dssp             HHHHHHHHHCG--GGEEEEEEESSCCTTBCCCCHHHHHHHHHHHTCCEEEECTTTTTCHHHHHHHH--HHHHHSCCCEEE
T ss_pred             HHHHHHHhcCC--CCEEEEEEECCcCCCceecCHHHHHHHHHHCCCeEEEECCCchhhhhhHhHHH--HHhcccCCCEEE
Confidence            99999987531  13445555544444669999999999999999999999999987765433221  122  4689999


Q ss_pred             ECCccccCCCCceEEEEEeccchhhhhccCCcccccccCcccccccCCCCCcccCCCCchhHHHHHHHHHhChHHHHHHH
Q psy14299        160 WNPHKMLGAPLQCSILLIKEKGLLHQANATAATYLFQQDKFYDVSFDTGDKSVQCGRKVDAFKLWLMWKARGNLGFRHFV  239 (448)
Q Consensus       160 ~s~hK~l~~P~g~G~l~vr~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~g~~~~i  239 (448)
                      .|+|||+++|.|++++++++++.+.....   .|...                +.  ..+++.+|+.+..+|.+++++.+
T Consensus       262 ~S~HK~l~a~~~~~~l~~rd~~~~~~~~~---~~~g~----------------~s--~SpsL~l~~~l~~~G~~g~~~~i  320 (450)
T 3bc8_A          262 QSLDKNFMVPVGGAIIAGFNEPFIQDISK---MYPGR----------------AS--ASPSLDVLITLLSLGCSGYRKLL  320 (450)
T ss_dssp             EEHHHHHSCCSSCEEEEESCHHHHHHHHH---HSCSC----------------BC--SHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             ECCccCCCchhccEEEEecCHHHHHHHHH---HhhcC----------------Cc--ccHHHHHHHHHHHHHHHHHHHHH
Confidence            99999999999999999987766554321   12110                00  11246778877777777777655


Q ss_pred             HH
Q psy14299        240 DN  241 (448)
Q Consensus       240 ~~  241 (448)
                      ++
T Consensus       321 ~~  322 (450)
T 3bc8_A          321 KE  322 (450)
T ss_dssp             HH
T ss_pred             HH
Confidence            44

>4hvk_A Probable cysteine desulfurase 2; transferase and ISCS, transferase; HET: PMP PG4; 1.43A {Archaeoglobus fulgidus} PDB: 4eb7_A* 4eb5_A*

Probab=99.95  E-value=6.9e-26  Score=226.32  Aligned_cols=292  Identities=14%  Similarity=0.183  Sum_probs=205.4

Q ss_pred             cEEEeCcHHHHHHHHHHHHHHhcCCcccccCCCCCCCeEEEecCCCchHHHHHHHHh---CCCCCcEEEEecCCCCCcCH
Q psy14299          4 KPFLLPGGSISNMYSICLARYRLDPDTKRKGLSHLPPLCMFTSEDSHYSMLKAAHWL---GIGMDNVIRVKTNERGQMIC   80 (448)
Q Consensus         4 ~g~~t~ggT~an~~al~~a~~~~~~~~~~~G~~~~~~~~Vl~~~~~H~s~~~~~~~~---g~~~~~v~~v~~~~~g~id~   80 (448)
                      .+++|+|||+++..++.+......          .+++.|+++..+|+++...+..+   |.   +++.+|.++++.+|+
T Consensus        62 ~i~~~~g~~~a~~~~~~~~~~~~~----------~~gd~vi~~~~~~~~~~~~~~~~~~~g~---~~~~v~~~~~~~~d~  128 (382)
T 4hvk_A           62 TVVFTSGATEANNLAIIGYAMRNA----------RKGKHILVSAVEHMSVINPAKFLQKQGF---EVEYIPVGKYGEVDV  128 (382)
T ss_dssp             EEEEESSHHHHHHHHHHHHHHHHG----------GGCCEEEEETTCCHHHHHHHHHHHHTTC---EEEEECBCTTSCBCH
T ss_pred             eEEEECCchHHHHHHHHHhhhhhc----------CCCCEEEECCCCcHHHHHHHHHHHhcCC---EEEEeccCCCCCcCH
Confidence            489999999999998887763100          15678999999999998877764   66   799999999999999


Q ss_pred             HHHHHHHHHhhhcCCCcEEEEEeccCCccccccCHHHHHHHHHHcCCEEEEecccccccccccchhhhhcCCCCccEEEE
Q psy14299         81 SFLEQTIQTSLAEKKIPLFVNATAGTTVLGAFDPLDEIATVCEKYDLWMHVDACWGGSLIFSEKYSFVLKGINRANSVSW  160 (448)
Q Consensus        81 e~Le~~l~~~~~~~~~~~lVv~~~~~t~tG~~~~l~~I~~ia~~~g~~l~VD~A~~~~~~~~~~~~~~~~~~~~aD~~~~  160 (448)
                      ++|++++++      ++++|++++++|++|.+.|+++|.++|++||+ +|+|++|+.+....+....      .+|+++.
T Consensus       129 ~~l~~~i~~------~~~~v~~~~~~nptG~~~~~~~i~~l~~~~~~-li~D~a~~~~~~~~~~~~~------~~d~~~~  195 (382)
T 4hvk_A          129 SFIDQKLRD------DTILVSVQHANNEIGTIQPVEEISEVLAGKAA-LHIDATASVGQIEVDVEKI------GADMLTI  195 (382)
T ss_dssp             HHHHHHCCT------TEEEEECCSBCTTTCBBCCHHHHHHHHSSSSE-EEEECTTTBTTBCCCHHHH------TCSEEEE
T ss_pred             HHHHHHhcc------CceEEEEECCCCCceeeCCHHHHHHHHHHcCE-EEEEhHHhcCCCCCCchhc------CCCEEEE
Confidence            999999864      57899999999999999999999999999999 9999999887664432111      3699999


Q ss_pred             CCccccCCCCceEEEEEeccchhhhhccCCcccccccCcccccccCCCCCcccCCCCchhHHHHHHHHHhChHHHHHHHH
Q psy14299        161 NPHKMLGAPLQCSILLIKEKGLLHQANATAATYLFQQDKFYDVSFDTGDKSVQCGRKVDAFKLWLMWKARGNLGFRHFVD  240 (448)
Q Consensus       161 s~hK~l~~P~g~G~l~vr~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~g~~~~i~  240 (448)
                      ++||++ +|.|+|+++++++..+.       .++.....         ......+..                       
T Consensus       196 s~~K~~-g~~g~g~~~~~~~~~~~-------~~~~~~~~---------~~~~~~~~~-----------------------  235 (382)
T 4hvk_A          196 SSNDIY-GPKGVGALWIRKEAKLQ-------PVILGGGQ---------ENGLRSGSE-----------------------  235 (382)
T ss_dssp             ESGGGT-SCTTCEEEEEETTCCCC-------CSSCSSCT---------GGGTSCSCC-----------------------
T ss_pred             eHHHhc-CCCceEEEEEcCccCcC-------cccccCCC---------cCccccCCc-----------------------
Confidence            999975 58889999997764111       11111000         000000000                       


Q ss_pred             HhhhhccCCCccchhhhhhhhhhhhhhhhhhhhhhhccccccccccCCCCCccccccchhhHHHHHHHHHhcCccHHHHH
Q psy14299        241 NAVDCSRGSMTFSTLLCFDLQGLLHQANATAATYLFQQDKFYDVSFDTGDKSVQCGRKVDAFKLWLMWKARGNLGFRHFV  320 (448)
Q Consensus       241 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~  320 (448)
                                                                              +...+.++..+++.. .++++++.
T Consensus       236 --------------------------------------------------------~~~~~~~~~~al~~~-~~~~~~~~  258 (382)
T 4hvk_A          236 --------------------------------------------------------NVPSIVGFGKAAEIT-AMEWREEA  258 (382)
T ss_dssp             --------------------------------------------------------CHHHHHHHHHHHHHH-HHHHHHHH
T ss_pred             --------------------------------------------------------CHHHHHHHHHHHHHH-HhhHHHHH
Confidence                                                                    011122222333322 24778889


Q ss_pred             HHHHHHHHHHHHHhhcCCCeEEeccCCc---eeeEEEEeeccCCCccccchhhhhhhhhhhHHHHHHHHhCCcEEEEeee
Q psy14299        321 DNAVDCSRYFLSQISQRPGFRLVIPEFQ---CTNICFWFIPVSLRDKVEDETWWSTLSKVAPRIKEKLVLGGTLMIGYQP  397 (448)
Q Consensus       321 ~~~~~l~~~~~~~L~~~pg~~l~~~~~~---~~~v~f~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~L~~~g~~~~~~~~  397 (448)
                      ++..++++++.+.|+++|+++++ .++.   .+.+.|.+.  +.+               ..++.+.|.++|+. +.++.
T Consensus       259 ~~~~~~~~~l~~~L~~~~~~~~~-~~~~~~~~~~~~~~~~--~~~---------------~~~~~~~l~~~gi~-v~~g~  319 (382)
T 4hvk_A          259 ERLRRLRDRIIDNVLKIEESYLN-GHPEKRLPNNVNVRFS--YIE---------------GESIVLSLDMAGIQ-ASTGS  319 (382)
T ss_dssp             HHHHHHHHHHHHHHTTSTTEEEC-SCSSSBCTTEEEEEET--TCC---------------HHHHHHHHHHTTCB-CBCC-
T ss_pred             HHHHHHHHHHHHHHhcCCCeEEe-CCccccCCCEEEEEEC--CCC---------------HHHHHHHHHHCCEE-EeeCC
Confidence            99999999999999999999987 4332   235566542  221               23678889888843 43321


Q ss_pred             cCCcc-----------------cccEEEEEecCCCCCCHHHHHHHHHHHHHHHHHhHHh
Q psy14299        398 LQHRN-----------------LHNFFRLVTTCHPASSRQDMDYAIDQIELRGAEVDLE  439 (448)
Q Consensus       398 ~~g~~-----------------~~~~lRis~~~~~~~t~edid~l~~al~~~~~~~~~~  439 (448)
                      ..+..                 ..+++|+++  +.++|++|+++++++|+++.+++...
T Consensus       320 ~~~~~~~~~~~~~~~~g~~~~~~~~~iRl~~--~~~~t~e~i~~~~~~l~~~~~~~~~~  376 (382)
T 4hvk_A          320 ACSSKTLQPSHVLMACGLKHEEAHGTLLLTL--GRYNTDEDVDRLLEVLPGVIERLRSM  376 (382)
T ss_dssp             -------CCCHHHHHTTCCHHHHHTEEEEEC--CTTCCHHHHHHHHHHHHHHHHHHHHT
T ss_pred             ccCCCCCcchHHHHHcCCChhhcCCeEEEEc--CCCCCHHHHHHHHHHHHHHHHHHHhh
Confidence            11100                 037999999  68899999999999999998876643

>3nnk_A Ureidoglycine-glyoxylate aminotransferase; PLP-dependent; HET: LLP; 2.58A {Klebsiella pneumoniae}

Probab=99.95  E-value=8.9e-26  Score=228.67  Aligned_cols=316  Identities=11%  Similarity=0.052  Sum_probs=219.3

Q ss_pred             EEEeCcHHHHHHHHHHHHHHhcCCcccccCCCCCCCeEEEecCCCchH--HHHHHHHhCCCCCcEEEEecCCCCCcCHHH
Q psy14299          5 PFLLPGGSISNMYSICLARYRLDPDTKRKGLSHLPPLCMFTSEDSHYS--MLKAAHWLGIGMDNVIRVKTNERGQMICSF   82 (448)
Q Consensus         5 g~~t~ggT~an~~al~~a~~~~~~~~~~~G~~~~~~~~Vl~~~~~H~s--~~~~~~~~g~~~~~v~~v~~~~~g~id~e~   82 (448)
                      .++|+|||+++..++.++..              +++.|+++..+|++  +...++..|.   +++.+|.++++.+|+++
T Consensus        67 v~~~~sgt~al~~~~~~~~~--------------~gd~Vl~~~~~~~~~~~~~~~~~~g~---~~~~v~~~~~~~~d~~~  129 (411)
T 3nnk_A           67 MLVDGTSRAGIEAILVSAIR--------------PGDKVLVPVFGRFGHLLCEIARRCRA---EVHTIEVPWGEVFTPDQ  129 (411)
T ss_dssp             EEEESCHHHHHHHHHHHHCC--------------TTCEEEEEECSHHHHHHHHHHHHTTC---EEEEEECCTTCCCCHHH
T ss_pred             EEECCCcHHHHHHHHHHhcC--------------CCCEEEEecCCchHHHHHHHHHHcCC---eEEEEecCCCCCCCHHH
Confidence            67889999999988877632              66788999999988  8888888888   79999998899999999


Q ss_pred             HHHHHHHhhhcCCCcEEEEEeccCCccccccCHHHHHHHHHHcCCEEEEecccccccccccchhhhhcCCCCccEEEECC
Q psy14299         83 LEQTIQTSLAEKKIPLFVNATAGTTVLGAFDPLDEIATVCEKYDLWMHVDACWGGSLIFSEKYSFVLKGINRANSVSWNP  162 (448)
Q Consensus        83 Le~~l~~~~~~~~~~~lVv~~~~~t~tG~~~~l~~I~~ia~~~g~~l~VD~A~~~~~~~~~~~~~~~~~~~~aD~~~~s~  162 (448)
                      |++++++.     ++++|++++++|++|.+.|+++|.++|++||+++|+|++++.+..+.+..     .. .+|++++++
T Consensus       130 l~~~i~~~-----~~~~v~~~~~~nptG~~~~l~~i~~l~~~~~~~li~Dea~~~~~~~~~~~-----~~-~~d~~~~s~  198 (411)
T 3nnk_A          130 VEDAVKRI-----RPRLLLTVQGDTSTTMLQPLAELGEICRRYDALFYTDATASLGGNPLETD-----VW-GLDAVSAGM  198 (411)
T ss_dssp             HHHHHHHH-----CCSEEEEESEETTTTEECCCTTHHHHHHHHTCEEEEECTTTBTTBCCCTT-----TT-TCSEEECCS
T ss_pred             HHHHHhhC-----CCeEEEEeCCCCCcceeccHHHHHHHHHHcCCEEEEECCcccCCcccchh-----cc-CCcEEEecC
Confidence            99999762     47899999999999999999999999999999999999998876543321     11 479999999


Q ss_pred             ccccCCCCceEEEEEeccchhhhhccC---CcccccccCcccccccCCCCCcccCCCCchhHHHHHHHHHhChHHHHHHH
Q psy14299        163 HKMLGAPLQCSILLIKEKGLLHQANAT---AATYLFQQDKFYDVSFDTGDKSVQCGRKVDAFKLWLMWKARGNLGFRHFV  239 (448)
Q Consensus       163 hK~l~~P~g~G~l~vr~~~~~~~~~~~---~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~g~~~~i  239 (448)
                      ||++++|.|+|+++++++ ........   .+.|.....  ..+      ........+....           .+....
T Consensus       199 ~K~l~~~~g~g~~~~~~~-~~~~~~~~~~~~~~~~g~~~--~gg------~~~~~~~~~~~~~-----------~~~~~~  258 (411)
T 3nnk_A          199 QKCLGGPSGTSPITLSAR-MEEAIRRRKCVEEGIRTDAH--RDG------DEEMIYSNYFDLG-----------MVMDYW  258 (411)
T ss_dssp             TTTTCCCSSEEEEEECHH-HHHHHHTTCCCCGGGCCTTC--CCC------SSCCCSCSTTCHH-----------HHHHHH
T ss_pred             ccccCCCCceEEEEECHH-HHHHHhhccccccccccccc--ccc------cCCCCcccccchH-----------HHHhhh
Confidence            999999999999998664 33322211   122221110  000      0000000000000           000000


Q ss_pred             HHhhhhccCCCccchhhhhhhhhhhhhhhhhhhhhhhccccccccccCCCCCccccccchhhHHHHHHHHHhcCccHHHH
Q psy14299        240 DNAVDCSRGSMTFSTLLCFDLQGLLHQANATAATYLFQQDKFYDVSFDTGDKSVQCGRKVDAFKLWLMWKARGNLGFRHF  319 (448)
Q Consensus       240 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~  319 (448)
                                                                     ..........+...+.++..+++....+|++++
T Consensus       259 -----------------------------------------------~~~~~~~~~~~~~~~~a~~~al~~~~~~g~~~~  291 (411)
T 3nnk_A          259 -----------------------------------------------GPERLNHHTEATTALFGARECARLILQEGLDYG  291 (411)
T ss_dssp             -----------------------------------------------STTCCCCSCCCHHHHHHHHHHHHHHHHHCHHHH
T ss_pred             -----------------------------------------------ccccCCCCCCCHHHHHHHHHHHHHHHHhhHHHH
Confidence                                                           000011122334556667778888888899999


Q ss_pred             HHHHHHHHHHHHHHhhcCCCeEEeccCCc---eeeEEEEeeccCCCccccchhhhhhhhhhhHHHHHHHHhC-CcEEEEe
Q psy14299        320 VDNAVDCSRYFLSQISQRPGFRLVIPEFQ---CTNICFWFIPVSLRDKVEDETWWSTLSKVAPRIKEKLVLG-GTLMIGY  395 (448)
Q Consensus       320 ~~~~~~l~~~~~~~L~~~pg~~l~~~~~~---~~~v~f~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~L~~~-g~~~~~~  395 (448)
                      .++..++++++.+.|+++ |++++ .++.   ..++.|.+ |.+.+               ..++.+.|.++ | +.+.+
T Consensus       292 ~~~~~~~~~~l~~~L~~~-g~~~~-~~~~~~~~~~~~~~~-~~~~~---------------~~~l~~~l~~~~g-i~v~~  352 (411)
T 3nnk_A          292 IARHKLHGDALVKGIQAM-GLETF-GDLKHKMNNVLGVVI-PQGIN---------------GDQARKLMLEDFG-IEIGT  352 (411)
T ss_dssp             HHHHHHHHHHHHHHHHHT-TCCBC-SCGGGBCSSEEEEEC-CTTCC---------------HHHHHHHHHHHHS-EEEEE
T ss_pred             HHHHHHHHHHHHHHHHHc-CCEeC-CCcccccccEEEEEC-CCCCC---------------HHHHHHHHHHhcC-eEEeC
Confidence            999999999999999998 88876 4332   34445543 32222               23788888877 8 55544


Q ss_pred             eecCCcccccEEEEEecCCCCCCHHHHHHHHHHHHHHHHHhH
Q psy14299        396 QPLQHRNLHNFFRLVTTCHPASSRQDMDYAIDQIELRGAEVD  437 (448)
Q Consensus       396 ~~~~g~~~~~~lRis~~~~~~~t~edid~l~~al~~~~~~~~  437 (448)
                      +..  ...++++|++++ ++.++++|+++++++|+++.+++.
T Consensus       353 g~~--~~~~~~iRi~~~-~~~~~~~~i~~~~~~l~~~l~~~~  391 (411)
T 3nnk_A          353 SFG--PLHGKVWRIGTM-GYNARKDCVMTTLSALEAVLNYLK  391 (411)
T ss_dssp             CCG--GGTTTEEEEECC-GGGCSHHHHHHHHHHHHHHHHHTT
T ss_pred             ccC--CCCCCEEEEeCc-cCcCCHHHHHHHHHHHHHHHHHcC
Confidence            321  112369999985 456789999999999999988754

>3e9k_A Kynureninase; kynurenine-L-hydrolase, kynurenine hydrolase, pyridoxal-5'-phosphate, inhibitor complex, 3-hydroxy hippur hydroxyhippuric acid, PLP; HET: PLP 3XH; 1.70A {Homo sapiens} PDB: 2hzp_A*

Probab=99.95  E-value=1.9e-25  Score=231.25  Aligned_cols=309  Identities=9%  Similarity=0.029  Sum_probs=217.2

Q ss_pred             cEEEeCcHHHHHHHHHHHHHHhcCCcccccCCCCCCCeEEEecCCCchHHHH----HHHHhCCCCCc--EEEEecCCCCC
Q psy14299          4 KPFLLPGGSISNMYSICLARYRLDPDTKRKGLSHLPPLCMFTSEDSHYSMLK----AAHWLGIGMDN--VIRVKTNERGQ   77 (448)
Q Consensus         4 ~g~~t~ggT~an~~al~~a~~~~~~~~~~~G~~~~~~~~Vl~~~~~H~s~~~----~~~~~g~~~~~--v~~v~~~~~g~   77 (448)
                      ..++|+|+|+++.+++.+..++        |   .+++.|+++..+|++...    .++..|.....  +..+|.+.++.
T Consensus       130 ~v~~t~g~t~al~~~~~~~~~~--------~---~~~~~Vl~~~~~~~s~~~~~~~~~~~~G~~~~~~~v~~~~~~~~~~  198 (465)
T 3e9k_A          130 EIALMNALTVNLHLLMLSFFKP--------T---PKRYKILLEAKAFPSDHYAIESQLQLHGLNIEESMRMIKPREGEET  198 (465)
T ss_dssp             GEEECSCHHHHHHHHHHHHCCC--------C---SSSCEEEEETTCCHHHHHHHHHHHHHTTCCHHHHEEEECCCTTCSS
T ss_pred             CEEEECCHHHHHHHHHHHhccc--------c---CCCCEEEEcCCcCCchHHHHHHHHHHcCCcceeeeEEEecCCCCCc
Confidence            5789999999988887766442        1   245679999999998444    66667873211  34456667889


Q ss_pred             cCHHHHHHHHHHhhhcCCCcEEEEEeccCCccccccCHHHHHHHHHHcCCEEEEecccccccccccchhhhhcCCCCccE
Q psy14299         78 MICSFLEQTIQTSLAEKKIPLFVNATAGTTVLGAFDPLDEIATVCEKYDLWMHVDACWGGSLIFSEKYSFVLKGINRANS  157 (448)
Q Consensus        78 id~e~Le~~l~~~~~~~~~~~lVv~~~~~t~tG~~~~l~~I~~ia~~~g~~l~VD~A~~~~~~~~~~~~~~~~~~~~aD~  157 (448)
                      +|+++|+++|++.   +.++++|++++++|++|.+.|+++|.++|++||+++++|+||+.+..+.+....      .+|+
T Consensus       199 ~d~~~l~~~i~~~---~~~~~lv~~~~~~n~tG~~~~l~~i~~la~~~g~~vi~D~a~~~g~~~~~~~~~------~~D~  269 (465)
T 3e9k_A          199 LRIEDILEVIEKE---GDSIAVILFSGVHFYTGQHFNIPAITKAGQAKGCYVGFDLAHAVGNVELYLHDW------GVDF  269 (465)
T ss_dssp             CCHHHHHHHHHHH---GGGEEEEEEESBCTTTCBBCCHHHHHHHHHHTTCEEEEECTTTTTTSCCCHHHH------TCCE
T ss_pred             cCHHHHHHHHHhc---CCCeEEEEEeCcccCcceeecHHHHHHHHHHcCCEEEEEhhhhcCCcCCchhhc------CCCE
Confidence            9999999999752   125889999999999999999999999999999999999999998876543211      4799


Q ss_pred             EEECCcccc-CCCCceEEEEEeccchhhhhccCCcccccccCcccccccCCCCCcccCCCCchhHHHHHHHHHhChHHHH
Q psy14299        158 VSWNPHKML-GAPLQCSILLIKEKGLLHQANATAATYLFQQDKFYDVSFDTGDKSVQCGRKVDAFKLWLMWKARGNLGFR  236 (448)
Q Consensus       158 ~~~s~hK~l-~~P~g~G~l~vr~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~g~~  236 (448)
                      +++++||++ ++|.|+|+++++++ +.....+...+|......   ..+... .                          
T Consensus       270 ~~~s~~K~l~~gp~~~g~l~~~~~-~~~~~~~~~~g~~~~~~~---~~~~~~-~--------------------------  318 (465)
T 3e9k_A          270 ACWCSYKYLNAGAGGIAGAFIHEK-HAHTIKPALVGWFGHELS---TRFKMD-N--------------------------  318 (465)
T ss_dssp             EEECSSSTTCCCTTCCCEEEECGG-GTTTSCCSSCCGGGBCHH---HHTTCC-S--------------------------
T ss_pred             EEECcccccccCCCceEEEEEcHH-HHhhcCCcccCccCCCCC---cccccC-C--------------------------
Confidence            999999999 48989999999664 333222111111111000   000000 0                          


Q ss_pred             HHHHHhhhhccCCCccchhhhhhhhhhhhhhhhhhhhhhhccccccccccCCCCCccccc--cchhhHHHHHHHHHhcCc
Q psy14299        237 HFVDNAVDCSRGSMTFSTLLCFDLQGLLHQANATAATYLFQQDKFYDVSFDTGDKSVQCG--RKVDAFKLWLMWKARGNL  314 (448)
Q Consensus       237 ~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~  314 (448)
                                                                    ...+......++++  +...+.++..+++.....
T Consensus       319 ----------------------------------------------~~~~~~~~~~~~~gt~~~~~~~a~~aal~~~~~~  352 (465)
T 3e9k_A          319 ----------------------------------------------KLQLIPGVCGFRISNPPILLVCSLHASLEIFKQA  352 (465)
T ss_dssp             ----------------------------------------------CCCBCSSGGGGCCSCCCHHHHHHHHHHHHHHHHH
T ss_pred             ----------------------------------------------CcCcCCChHHhccCCccHHHHHHHHHHHHHHHHc
Confidence                                                          00001111222222  256677778888888888


Q ss_pred             cHHHHHHHHHHHHHHHHHHhhcC----------CCeEEeccCC----ceeeEEEEeeccCCCccccchhhhhhhhhhhHH
Q psy14299        315 GFRHFVDNAVDCSRYFLSQISQR----------PGFRLVIPEF----QCTNICFWFIPVSLRDKVEDETWWSTLSKVAPR  380 (448)
Q Consensus       315 G~~~~~~~~~~l~~~~~~~L~~~----------pg~~l~~~~~----~~~~v~f~~~~~~~~~~~~~~~~~~~~~~~~~~  380 (448)
                      |++++.++..++++++.+.|+++          +|++++ .+.    ..+.++|.+. .+.                 .+
T Consensus       353 ~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~g~~~~-~p~~~~~~g~~~~~~~~-~~~-----------------~~  413 (465)
T 3e9k_A          353 TMKALRKKSVLLTGYLEYLIKHNYGKDKAATKKPVVNII-TPSHVEERGCQLTITFS-VPN-----------------KD  413 (465)
T ss_dssp             CHHHHHHHHHHHHHHHHHHHHHHCC---------CEEEC-SCSSGGGBCSCEEEEEC-CTT-----------------CC
T ss_pred             CHHHHHHHHHHHHHHHHHHHHhhccccccccCCCCeEEe-CCCCHhhcccEEEEEec-CCH-----------------HH
Confidence            99999999999999999999986          799997 433    2667777653 111                 15


Q ss_pred             HHHHHHhCCcEEEEeeecCCcccccEEEEEecCCCCCCHHHHHHHHHHHHHHHHHh
Q psy14299        381 IKEKLVLGGTLMIGYQPLQHRNLHNFFRLVTTCHPASSRQDMDYAIDQIELRGAEV  436 (448)
Q Consensus       381 i~~~L~~~g~~~~~~~~~~g~~~~~~lRis~~~~~~~t~edid~l~~al~~~~~~~  436 (448)
                      +.+.|.++| +++..   .+   ++++|++++ +.++|++||++++++|+++.++.
T Consensus       414 l~~~L~~~G-i~v~~---~~---~~~iRis~~-~~~~t~edi~~~~~~l~~~l~~~  461 (465)
T 3e9k_A          414 VFQELEKRG-VVCDK---RN---PNGIRVAPV-PLYNSFHDVYKFTNLLTSILDSA  461 (465)
T ss_dssp             HHHHHHTTT-EECEE---ET---TTEEEEBCC-TTTCCHHHHHHHHHHHHHHHTC-
T ss_pred             HHHHHHHCC-EEEec---CC---CCEEEEeCc-ccCCCHHHHHHHHHHHHHHHHhc
Confidence            788899999 44432   22   279999986 68999999999999999988654

>2dr1_A PH1308 protein, 386AA long hypothetical serine aminotransferase; PLP, structural genomics, NPPSFA; HET: PLP; 1.90A {Pyrococcus horikoshii}

Probab=99.94  E-value=6e-25  Score=220.49  Aligned_cols=301  Identities=14%  Similarity=0.108  Sum_probs=216.5

Q ss_pred             cEEEeCcHHHHHHHHHHHHHHhcCCcccccCCCCCCCeEEEecCCCchH--HHHHHHHhCCCCCcEEEEecCCCCCcCHH
Q psy14299          4 KPFLLPGGSISNMYSICLARYRLDPDTKRKGLSHLPPLCMFTSEDSHYS--MLKAAHWLGIGMDNVIRVKTNERGQMICS   81 (448)
Q Consensus         4 ~g~~t~ggT~an~~al~~a~~~~~~~~~~~G~~~~~~~~Vl~~~~~H~s--~~~~~~~~g~~~~~v~~v~~~~~g~id~e   81 (448)
                      .+++|+|||+++..++.++..              +++.|+++..+|++  +...++..|.   +++.++.++++.+|++
T Consensus        73 ~v~~~~g~t~a~~~~~~~l~~--------------~gd~vl~~~~~~~~~~~~~~~~~~g~---~~~~v~~~~~~~~d~~  135 (386)
T 2dr1_A           73 VLLVPSSGTGIMEASIRNGVS--------------KGGKVLVTIIGAFGKRYKEVVESNGR---KAVVLEYEPGKAVKPE  135 (386)
T ss_dssp             EEEESSCHHHHHHHHHHHHSC--------------TTCEEEEEESSHHHHHHHHHHHHTTC---EEEEEECCTTCCCCHH
T ss_pred             EEEEeCChHHHHHHHHHHhhc--------------CCCeEEEEcCCchhHHHHHHHHHhCC---ceEEEecCCCCCCCHH
Confidence            378999999999998877633              56678889999998  8888888888   7899999888899999


Q ss_pred             HHHHHHHHhhhcCCCcEEEEEeccCCccccccCHHHHHHHHHHcCCEEEEecccccccccccchhhhhcCCCCccEEEEC
Q psy14299         82 FLEQTIQTSLAEKKIPLFVNATAGTTVLGAFDPLDEIATVCEKYDLWMHVDACWGGSLIFSEKYSFVLKGINRANSVSWN  161 (448)
Q Consensus        82 ~Le~~l~~~~~~~~~~~lVv~~~~~t~tG~~~~l~~I~~ia~~~g~~l~VD~A~~~~~~~~~~~~~~~~~~~~aD~~~~s  161 (448)
                      +|++++++.    .++++|++++++|++|.+.|+++|.++|++||+++|+|++|+.+....+     +... .+|+++.|
T Consensus       136 ~l~~~l~~~----~~~~~v~~~~~~nptG~~~~l~~i~~l~~~~~~~li~D~a~~~~~~~~~-----~~~~-~~di~~~s  205 (386)
T 2dr1_A          136 DLDDALRKN----PDVEAVTITYNETSTGVLNPLPELAKVAKEHDKLVFVDAVSAMGGADIK-----FDKW-GLDVVFSS  205 (386)
T ss_dssp             HHHHHHHHC----TTCCEEEEESEETTTTEECCHHHHHHHHHHTTCEEEEECTTTBTTBCCC-----TTTT-TCSEEEEE
T ss_pred             HHHHHHhcC----CCCcEEEEEeecCCcchhCCHHHHHHHHHHcCCeEEEEccccccCcccc-----cccc-CCcEEEEe
Confidence            999999641    3578999999999999999999999999999999999999998765332     1112 47999999


Q ss_pred             CccccCCCCceEEEEEeccchhhhhccC-CcccccccCcccccccCCCCCcccCCCCchhHHHHHHHHHhChHHHHHHHH
Q psy14299        162 PHKMLGAPLQCSILLIKEKGLLHQANAT-AATYLFQQDKFYDVSFDTGDKSVQCGRKVDAFKLWLMWKARGNLGFRHFVD  240 (448)
Q Consensus       162 ~hK~l~~P~g~G~l~vr~~~~~~~~~~~-~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~g~~~~i~  240 (448)
                      +||++++|.|+|+++++++ +....... ..++...                                      +...++
T Consensus       206 ~sK~~~~~~g~G~~~~~~~-~~~~~~~~~~~~~~~~--------------------------------------~~~~~~  246 (386)
T 2dr1_A          206 SQKAFGVPPGLAIGAFSER-FLEIAEKMPERGWYFD--------------------------------------IPLYVK  246 (386)
T ss_dssp             TTSTTCCCSSCEEEEECHH-HHHHHTTCTTCCSTTC--------------------------------------HHHHHH
T ss_pred             ccccccCCCceEEEEECHH-HHHHHhcCCCCceEEe--------------------------------------HHHHHH
Confidence            9999999988999998654 33332110 0011000                                      000000


Q ss_pred             Hhh-hhccCCCccchhhhhhhhhhhhhhhhhhhhhhhccccccccccCCCCCccccccchhhHHHHHHHHHhcCc-cHHH
Q psy14299        241 NAV-DCSRGSMTFSTLLCFDLQGLLHQANATAATYLFQQDKFYDVSFDTGDKSVQCGRKVDAFKLWLMWKARGNL-GFRH  318 (448)
Q Consensus       241 ~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-G~~~  318 (448)
                      ... .                                             .....+.+...+.++..+++..... |+++
T Consensus       247 ~~~~~---------------------------------------------~~~~~~~~~~~~~a~~~~l~~~~~~g~~~~  281 (386)
T 2dr1_A          247 YLKEK---------------------------------------------ESTPSTPPMPQVFGINVALRIIEKMGGKEK  281 (386)
T ss_dssp             HHHHH---------------------------------------------SSCSSCCCHHHHHHHHHHHHHHHHTTCHHH
T ss_pred             hhccC---------------------------------------------CCCCCCCCHHHHHHHHHHHHHHHHhcCHHH
Confidence            000 0                                             0000122334455566677777666 8999


Q ss_pred             HHHHHHHHHHHHHHHhhcCCCeEEeccCC---ceeeEEEEeeccCCCccccchhhhhhhhhhhHHHHHHHHhCCcEEEEe
Q psy14299        319 FVDNAVDCSRYFLSQISQRPGFRLVIPEF---QCTNICFWFIPVSLRDKVEDETWWSTLSKVAPRIKEKLVLGGTLMIGY  395 (448)
Q Consensus       319 ~~~~~~~l~~~~~~~L~~~pg~~l~~~~~---~~~~v~f~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~L~~~g~~~~~~  395 (448)
                      +.++..++++++.+.|+++ |++++ .+.   ...++.|.+ |.+.+               ..++.+.|.++| +.+.+
T Consensus       282 ~~~~~~~~~~~l~~~L~~~-g~~~~-~~~~~~~~~~~~~~~-~~~~~---------------~~~~~~~l~~~g-i~v~~  342 (386)
T 2dr1_A          282 WLEMYEKRAKMVREGVREI-GLDIL-AEPGHESPTITAVLT-PPGIK---------------GDEVYEAMRKRG-FELAK  342 (386)
T ss_dssp             HHHHHHHHHHHHHHHHHHT-TCCBS-SCTTCBCSSEEEEEC-CTTCC---------------HHHHHHHHHHTT-EECEE
T ss_pred             HHHHHHHHHHHHHHHHHHc-CCeeC-cCccccCCceEEEEc-CCCCC---------------HHHHHHHHHHCC-eEEec
Confidence            9999999999999999998 88876 332   244555543 21211               237889999998 55544


Q ss_pred             eecCCcccccEEEEEecCCCCCCHHHHHHHHHHHHHHHHHhHH
Q psy14299        396 QPLQHRNLHNFFRLVTTCHPASSRQDMDYAIDQIELRGAEVDL  438 (448)
Q Consensus       396 ~~~~g~~~~~~lRis~~~~~~~t~edid~l~~al~~~~~~~~~  438 (448)
                      +....  .++++|+++  +.+++++|+++++++|+++.++++.
T Consensus       343 ~~~~~--~~~~iRi~~--~~~~~~~~i~~~~~~l~~~~~~~~~  381 (386)
T 2dr1_A          343 GYGSV--KEKTFRIGH--MGYMKFEDIQEMLDNLREVINELKK  381 (386)
T ss_dssp             CCGGG--TTTEEEEEC--CSSCCHHHHHHHHHHHHHHHHHHHH
T ss_pred             Ccccc--CCCEEEEEC--CCCCCHHHHHHHHHHHHHHHHHcCC
Confidence            33211  137999999  5789999999999999999887653

>3zrp_A Serine-pyruvate aminotransferase (AGXT); HET: PLP; 1.75A {Sulfolobus solfataricus} PDB: 3zrq_A* 3zrr_A*

Probab=99.94  E-value=7.4e-26  Score=226.74  Aligned_cols=300  Identities=13%  Similarity=0.083  Sum_probs=212.8

Q ss_pred             cEEEeCcHHHHHHHHHHHHHHhcCCcccccCCCCCCCeEEEecCCCchH--HHHHHHHhCCCCCcEEEEecCCCCCcCHH
Q psy14299          4 KPFLLPGGSISNMYSICLARYRLDPDTKRKGLSHLPPLCMFTSEDSHYS--MLKAAHWLGIGMDNVIRVKTNERGQMICS   81 (448)
Q Consensus         4 ~g~~t~ggT~an~~al~~a~~~~~~~~~~~G~~~~~~~~Vl~~~~~H~s--~~~~~~~~g~~~~~v~~v~~~~~g~id~e   81 (448)
                      .+++|+|||+++. ++..+.              .+++.|++++..|++  +...++..|.   +++.++.++++.+|++
T Consensus        56 ~v~~~~g~t~al~-~~~~~~--------------~~gd~vi~~~~~~~~~~~~~~~~~~g~---~~~~v~~~~~~~~d~~  117 (384)
T 3zrp_A           56 PLIIPGGGTSAME-SVTSLL--------------KPNDKILVVSNGVFGDRWEQIFKRYPV---NVKVLRPSPGDYVKPG  117 (384)
T ss_dssp             EEEEESCHHHHHH-HGGGGC--------------CTTCEEEEECSSHHHHHHHHHHTTSSC---EEEEECCSTTCCCCHH
T ss_pred             EEEEcCCcHHHHH-HHHhhc--------------CCCCEEEEecCCcchHHHHHHHHHcCC---cEEEecCCCCCCCCHH
Confidence            4799999999998 765432              266778888889976  5555566677   7999999989999999


Q ss_pred             HHHHHHHHhhhcCCCcEEEEEeccCCccccccCHHHHHHHHHHcCCEEEEecccccccccccchhhhhcCCCCccEEEEC
Q psy14299         82 FLEQTIQTSLAEKKIPLFVNATAGTTVLGAFDPLDEIATVCEKYDLWMHVDACWGGSLIFSEKYSFVLKGINRANSVSWN  161 (448)
Q Consensus        82 ~Le~~l~~~~~~~~~~~lVv~~~~~t~tG~~~~l~~I~~ia~~~g~~l~VD~A~~~~~~~~~~~~~~~~~~~~aD~~~~s  161 (448)
                      +|++++++.     ++++|++++++|++|.+.|+++|.++|++||+++++|++|+.+....+..     .. .+|+++++
T Consensus       118 ~l~~~i~~~-----~~~~v~~~~~~nptG~~~~l~~i~~l~~~~~~~li~D~a~~~~~~~~~~~-----~~-~~d~~~~s  186 (384)
T 3zrp_A          118 EVEEEVRKS-----EYKLVALTHVETSTGVREPVKDVINKIRKYVELIVVDGVSSVGAEEVKAE-----EW-NVDVYLTA  186 (384)
T ss_dssp             HHHHHHHHS-----CEEEEEEESEETTTTEECCHHHHHHHHGGGEEEEEEECTTTTTTSCCCTT-----TT-TCSEEEEE
T ss_pred             HHHHHHHhC-----CCcEEEEeCCCCCCceECcHHHHHHHHHhcCCEEEEECcccccCcccccc-----cc-CCCEEEec
Confidence            999999762     48899999999999999999999999999999999999999776543321     11 47999999


Q ss_pred             CccccCCCCceEEEEEeccchhhhh-ccC-CcccccccCcccccccCCCCCcccCCCCchhHHHHHHHHHhChHHHHHHH
Q psy14299        162 PHKMLGAPLQCSILLIKEKGLLHQA-NAT-AATYLFQQDKFYDVSFDTGDKSVQCGRKVDAFKLWLMWKARGNLGFRHFV  239 (448)
Q Consensus       162 ~hK~l~~P~g~G~l~vr~~~~~~~~-~~~-~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~g~~~~i  239 (448)
                      +||++++|.|+|+++++++ ..... .+. ..++...                                   ...+....
T Consensus       187 ~~K~~~~~~g~g~~~~~~~-~~~~~~~~~~~~~~~~~-----------------------------------~~~~~~~~  230 (384)
T 3zrp_A          187 SQKALGSAAGLGLLLLSPK-ALSILDSQNSIAGYYLD-----------------------------------LRNWLPVM  230 (384)
T ss_dssp             TTSTTCCCSSEEEEEECHH-HHHHHHHCCCSCCSTTC-----------------------------------HHHHHHHH
T ss_pred             CcccccCCCceEEEEECHH-HHHHhcCCCCCCccccc-----------------------------------HHHHHHHH
Confidence            9999999999999998664 33332 110 0111000                                   00000000


Q ss_pred             HHhhhhccCCCccchhhhhhhhhhhhhhhhhhhhhhhccccccccccCC-CCCccccccchhhHHHHHHHHHhcCccHHH
Q psy14299        240 DNAVDCSRGSMTFSTLLCFDLQGLLHQANATAATYLFQQDKFYDVSFDT-GDKSVQCGRKVDAFKLWLMWKARGNLGFRH  318 (448)
Q Consensus       240 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~  318 (448)
                      .. ++                                           . ....+...+...+.++..+++....+|+++
T Consensus       231 ~~-~~-------------------------------------------~~~~~~~g~~~~~~~~a~~~al~~~~~~~~~~  266 (384)
T 3zrp_A          231 RG-AE-------------------------------------------EGKAAYFATPPVHVILQLAEAFRLIEKEGIEN  266 (384)
T ss_dssp             HH-HH-------------------------------------------TTCCCCSSCCCHHHHHHHHHHHHHHHHHCHHH
T ss_pred             Hh-hc-------------------------------------------ccCCCcCCCCCHHHHHHHHHHHHHHHhcCHHH
Confidence            00 00                                           0 000011223445566667788878889999


Q ss_pred             HHHHHHHHHHHHHHHhhcCCCeEEeccCC----ceeeEEEEeeccCCCccccchhhhhhhhhhhHHHHHHHHhCCcEEEE
Q psy14299        319 FVDNAVDCSRYFLSQISQRPGFRLVIPEF----QCTNICFWFIPVSLRDKVEDETWWSTLSKVAPRIKEKLVLGGTLMIG  394 (448)
Q Consensus       319 ~~~~~~~l~~~~~~~L~~~pg~~l~~~~~----~~~~v~f~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~L~~~g~~~~~  394 (448)
                      +.++..++++++.+.|+++ |++++ .++    ...++.|.+..  .+               ..++.+.|.++|+ .+.
T Consensus       267 ~~~~~~~~~~~l~~~L~~~-g~~~~-~~~~~~~~~~~~~~~~~~--~~---------------~~~~~~~l~~~gi-~v~  326 (384)
T 3zrp_A          267 RIKRHTMVASAIRAGLEAL-GLEIV-ARRPESYSNTVTGVILKV--AD---------------PQKVLAGTVNEGV-EFA  326 (384)
T ss_dssp             HHHHHHHHHHHHHHHHHHT-TCCBS-CSSGGGBCSSEEEEECSS--SC---------------HHHHHHHHHTTTC-CCE
T ss_pred             HHHHHHHHHHHHHHHHHHC-CCeEc-cCcccccCccEEEEECCC--CC---------------HHHHHHHHHHCCE-EEe
Confidence            9999999999999999999 98876 433    13444454321  21               2378899999984 444


Q ss_pred             eeecCCcccccEEEEEecCCCCCCHHHHHHHHHHHHHHHHHhH
Q psy14299        395 YQPLQHRNLHNFFRLVTTCHPASSRQDMDYAIDQIELRGAEVD  437 (448)
Q Consensus       395 ~~~~~g~~~~~~lRis~~~~~~~t~edid~l~~al~~~~~~~~  437 (448)
                      ++.....   +++|+++  +.+++++|+++++++|+++.+++.
T Consensus       327 ~g~~~~~---~~iRi~~--~~~~~~e~i~~~~~~l~~~l~~~~  364 (384)
T 3zrp_A          327 PGVHPAF---KYFRIGH--MGWVTPNDAIIAISVIERTLRKLG  364 (384)
T ss_dssp             ECCCTTC---CEEEEEC--CSSCCHHHHHHHHHHHHHHHHHHT
T ss_pred             cCCCCCc---CEEEEec--cccCCHHHHHHHHHHHHHHHHHcC
Confidence            4332221   6899999  578999999999999999998765

>1t3i_A Probable cysteine desulfurase; PLP-binding enzyme, transferase; HET: 2OS PLP; 1.80A {Synechocystis SP} SCOP: c.67.1.3

Probab=99.94  E-value=5.1e-25  Score=223.53  Aligned_cols=302  Identities=15%  Similarity=0.096  Sum_probs=210.7

Q ss_pred             cEEEeCcHHHHHHHHHHHHHHhcCCcccccCCCCCCCeEEEecCCCchH----HHHHHHHhCCCCCcEEEEecCCCCCcC
Q psy14299          4 KPFLLPGGSISNMYSICLARYRLDPDTKRKGLSHLPPLCMFTSEDSHYS----MLKAAHWLGIGMDNVIRVKTNERGQMI   79 (448)
Q Consensus         4 ~g~~t~ggT~an~~al~~a~~~~~~~~~~~G~~~~~~~~Vl~~~~~H~s----~~~~~~~~g~~~~~v~~v~~~~~g~id   79 (448)
                      .+++|+|||+++..++.++++...          .+++.|+++..+|++    +...++..|.   +++.++.++++.+|
T Consensus        92 ~v~~~~g~t~a~~~~~~~~~~~~~----------~~gd~Vl~~~~~~~~~~~~~~~~~~~~g~---~~~~v~~~~~~~~d  158 (420)
T 1t3i_A           92 EIVYTRNATEAINLVAYSWGMNNL----------KAGDEIITTVMEHHSNLVPWQMVAAKTGA---VLKFVQLDEQESFD  158 (420)
T ss_dssp             GEEEESSHHHHHHHHHHHTHHHHC----------CTTCEEEEETTCCGGGTHHHHHHHHHHCC---EEEEECBCTTSSBC
T ss_pred             eEEEcCChHHHHHHHHHHhhhccc----------CCCCEEEECcchhHHHHHHHHHHHHhcCc---EEEEeccCCCCCcC
Confidence            589999999999999887742100          256788999999998    5677778888   78999998889999


Q ss_pred             HHHHHHHHHHhhhcCCCcEEEEEeccCCccccccCHHHHHHHHHHcCCEEEEecccccccccccchhhhhcCCCCccEEE
Q psy14299         80 CSFLEQTIQTSLAEKKIPLFVNATAGTTVLGAFDPLDEIATVCEKYDLWMHVDACWGGSLIFSEKYSFVLKGINRANSVS  159 (448)
Q Consensus        80 ~e~Le~~l~~~~~~~~~~~lVv~~~~~t~tG~~~~l~~I~~ia~~~g~~l~VD~A~~~~~~~~~~~~~~~~~~~~aD~~~  159 (448)
                      +++|++++++      ++++|++++++|++|.+.|+++|.++|++||+++++|++|+.+....+..     .. ..|+++
T Consensus       159 ~~~l~~~l~~------~~~~v~~~~~~nptG~~~~l~~i~~l~~~~~~~li~D~a~~~~~~~~~~~-----~~-~~di~~  226 (420)
T 1t3i_A          159 LEHFKTLLSE------KTKLVTVVHISNTLGCVNPAEEIAQLAHQAGAKVLVDACQSAPHYPLDVQ-----LI-DCDWLV  226 (420)
T ss_dssp             HHHHHHHCCT------TEEEEEEESBCTTTCBBCCHHHHHHHHHHTTCEEEEECTTTTTTSCCCHH-----HH-TCSEEE
T ss_pred             HHHHHHhhCC------CceEEEEeCCcccccCcCCHHHHHHHHHHcCCEEEEEhhhccCCccCchh-----hc-CCCEEE
Confidence            9999999854      58899999999999999999999999999999999999999876533211     11 369999


Q ss_pred             ECCccccCCCCceEEEEEeccchhhhhccCCcc--cccccCcccccccCCCCCcccCCCCchhHHHHHHHHHhChHHHHH
Q psy14299        160 WNPHKMLGAPLQCSILLIKEKGLLHQANATAAT--YLFQQDKFYDVSFDTGDKSVQCGRKVDAFKLWLMWKARGNLGFRH  237 (448)
Q Consensus       160 ~s~hK~l~~P~g~G~l~vr~~~~~~~~~~~~~~--y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~g~~~  237 (448)
                      .|+|| +.+|.|+|++++++ ++..........  +.....      .  ....+.                        
T Consensus       227 ~s~sK-~~~~~g~G~~~~~~-~~~~~~~~~~~~~~~~~~~~------~--~~~~~~------------------------  272 (420)
T 1t3i_A          227 ASGHK-MCAPTGIGFLYGKE-EILEAMPPFFGGGEMIAEVF------F--DHFTTG------------------------  272 (420)
T ss_dssp             EEGGG-TTSCTTCEEEEECH-HHHHHSCCCSCSTTSEEEEC------S--SCEEEC------------------------
T ss_pred             Eehhh-hcCCCceEEEEEch-HHHhhcCceecCCCcccccc------c--cccCCC------------------------
Confidence            99999 45677899988865 333332211111  000000      0  000000                        


Q ss_pred             HHHHhhhhccCCCccchhhhhhhhhhhhhhhhhhhhhhhccccccccccCCCCCccc-ccc-chhhHHHHHHHHHhcCcc
Q psy14299        238 FVDNAVDCSRGSMTFSTLLCFDLQGLLHQANATAATYLFQQDKFYDVSFDTGDKSVQ-CGR-KVDAFKLWLMWKARGNLG  315 (448)
Q Consensus       238 ~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~-~~~~~~~~~~~~~~~~~G  315 (448)
                                                                        -....+. +.+ ...++++..+++.+...|
T Consensus       273 --------------------------------------------------~~~~~~~~~~~~~~~~~a~~~al~~~~~~~  302 (420)
T 1t3i_A          273 --------------------------------------------------ELPHKFEAGTPAIAEAIALGAAVDYLTDLG  302 (420)
T ss_dssp             --------------------------------------------------CTTGGGCCSSCCHHHHHHHHHHHHHHHHHC
T ss_pred             --------------------------------------------------CchhhccCCCccHHHHHHHHHHHHHHHHhH
Confidence                                                              0000000 111 122333334566666668


Q ss_pred             HHHHHHHHHHHHHHHHHHhhcCCCeEEeccCC-----ceeeEEEEeeccCCCccccchhhhhhhhhhhHHHHHHHHhCCc
Q psy14299        316 FRHFVDNAVDCSRYFLSQISQRPGFRLVIPEF-----QCTNICFWFIPVSLRDKVEDETWWSTLSKVAPRIKEKLVLGGT  390 (448)
Q Consensus       316 ~~~~~~~~~~l~~~~~~~L~~~pg~~l~~~~~-----~~~~v~f~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~L~~~g~  390 (448)
                      ++++.++..++++++.+.|+++||++++ .+.     ..+++.|.+ + +.+               ..++.+.|.++| 
T Consensus       303 ~~~~~~~~~~~~~~l~~~L~~~~g~~~~-~~~~~~~~~~~~~~~~~-~-~~~---------------~~~~~~~l~~~g-  363 (420)
T 1t3i_A          303 MENIHNYEVELTHYLWQGLGQIPQLRLY-GPNPKHGDRAALASFNV-A-GLH---------------ASDVATMVDQDG-  363 (420)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHTCTTEEEE-SCCGGGSCBCSEEEEEE-T-TBC---------------HHHHHHHHHTTT-
T ss_pred             HHHHHHHHHHHHHHHHHHHHhCCCeEEe-CCCccccccCCEEEEEE-C-CCC---------------HHHHHHHHHHCC-
Confidence            8899999999999999999999999987 443     366666653 2 111               136778888888 


Q ss_pred             EEEEeeec--------CCcccccEEEEEecCCCCCCHHHHHHHHHHHHHHHHHhH
Q psy14299        391 LMIGYQPL--------QHRNLHNFFRLVTTCHPASSRQDMDYAIDQIELRGAEVD  437 (448)
Q Consensus       391 ~~~~~~~~--------~g~~~~~~lRis~~~~~~~t~edid~l~~al~~~~~~~~  437 (448)
                      +.+.+...        .+.  ++++|+++  +.+++++|+++++++|+++.+.+.
T Consensus       364 i~v~~~~~~~~~~~~~~g~--~~~iRis~--~~~~~~~~i~~~~~~l~~~~~~~~  414 (420)
T 1t3i_A          364 IAIRSGHHCTQPLHRLFDA--SGSARASL--YFYNTKEEIDLFLQSLQATIRFFS  414 (420)
T ss_dssp             EECBCSCTTCHHHHHHTTC--CCCEEEEC--CTTCCHHHHHHHHHHHHHHHHHTC
T ss_pred             eEEeeccccchHHHHhcCC--CCeEEEec--CCCCCHHHHHHHHHHHHHHHHHhc
Confidence            55544311        121  37899999  678999999999999999987653

>4eb5_A Probable cysteine desulfurase 2; scaffold, transferase-metal binding protein complex; HET: PLP EPE; 2.53A {Archaeoglobus fulgidus} PDB: 4eb7_A*

Probab=99.94  E-value=2.9e-25  Score=222.53  Aligned_cols=291  Identities=15%  Similarity=0.181  Sum_probs=202.6

Q ss_pred             cEEEeCcHHHHHHHHHHHHHHhcCCcccccCCCCCCCeEEEecCCCchHHHHHHHHh---CCCCCcEEEEecCCCCCcCH
Q psy14299          4 KPFLLPGGSISNMYSICLARYRLDPDTKRKGLSHLPPLCMFTSEDSHYSMLKAAHWL---GIGMDNVIRVKTNERGQMIC   80 (448)
Q Consensus         4 ~g~~t~ggT~an~~al~~a~~~~~~~~~~~G~~~~~~~~Vl~~~~~H~s~~~~~~~~---g~~~~~v~~v~~~~~g~id~   80 (448)
                      .+++|+|||+++.+++.+++..+.          .+++.|+++..+|+++...+..+   |.   +++.++.++++.+|+
T Consensus        62 ~v~~~~g~t~a~~~~~~~l~~~~~----------~~gd~Vl~~~~~~~~~~~~~~~~~~~g~---~~~~v~~~~~~~~d~  128 (382)
T 4eb5_A           62 TVVFTSGATEANNLAIIGYAMRNA----------RKGKHILVSAVEHMSVINPAKFLQKQGF---EVEYIPVGKYGEVDV  128 (382)
T ss_dssp             EEEEESSHHHHHHHHHHHHHHHHG----------GGCCEEEEETTCCHHHHHHHHHHTTTTC---EEEEECBCTTSCBCH
T ss_pred             eEEEcCchHHHHHHHHHHHHhhcc----------CCCCEEEECCCcchHHHHHHHHHHhCCc---EEEEeccCCCCccCH
Confidence            578999999999999888762100          15667999999999998888763   55   789999988899999


Q ss_pred             HHHHHHHHHhhhcCCCcEEEEEeccCCccccccCHHHHHHHHHHcCCEEEEecccccccccccchhhhhcCCCCccEEEE
Q psy14299         81 SFLEQTIQTSLAEKKIPLFVNATAGTTVLGAFDPLDEIATVCEKYDLWMHVDACWGGSLIFSEKYSFVLKGINRANSVSW  160 (448)
Q Consensus        81 e~Le~~l~~~~~~~~~~~lVv~~~~~t~tG~~~~l~~I~~ia~~~g~~l~VD~A~~~~~~~~~~~~~~~~~~~~aD~~~~  160 (448)
                      ++|++++++      ++++|++++++|++|.+.|+++|.++|++||++ |+|++|+.+..+.+.     ... .+|+++.
T Consensus       129 ~~l~~~i~~------~~~~v~~~~~~nptG~~~~l~~i~~l~~~~~~~-i~D~a~~~g~~~~~~-----~~~-~~di~~~  195 (382)
T 4eb5_A          129 SFIDQKLRD------DTILVSVQHANNEIGTIQPVEEISEVLAGKAAL-HIDATASVGQIEVDV-----EKI-GADMLTI  195 (382)
T ss_dssp             HHHHHHCCT------TEEEEECCSBCTTTCBBCCHHHHHHHHTTSSEE-EEECTTTBTTBCCCH-----HHH-TCSEEEE
T ss_pred             HHHHHHhcC------CCeEEEEeccCCCccccCCHHHHHHHHHHCCCE-EEEcchhcCCcccCc-----ccc-CCCEEEe
Confidence            999999854      478999999999999999999999999999999 999999976543321     111 3689999


Q ss_pred             CCccccCCCCceEEEEEeccchhhhhccCCcccccccCcccccccCCCCCcccCCCCchhHHHHHHHHHhChHHHHHHHH
Q psy14299        161 NPHKMLGAPLQCSILLIKEKGLLHQANATAATYLFQQDKFYDVSFDTGDKSVQCGRKVDAFKLWLMWKARGNLGFRHFVD  240 (448)
Q Consensus       161 s~hK~l~~P~g~G~l~vr~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~g~~~~i~  240 (448)
                      |+||+ ++|.|+|+++++++..+..       ++.....         ......+..                       
T Consensus       196 s~sK~-~g~~g~G~~~~~~~~~l~~-------~~~~~~~---------~~~~~~~~~-----------------------  235 (382)
T 4eb5_A          196 SSNDI-YGPKGVGALWIRKEAKLQP-------VILGGGQ---------ENGLRSGSE-----------------------  235 (382)
T ss_dssp             ETGGG-TCCSSCEEEEEETTCCCCC-------SSCSSCT---------GGGTSCSCC-----------------------
T ss_pred             ehHHh-cCCCceEEEEEccccccCc-------eecCCCc---------cccccCCCc-----------------------
Confidence            99998 5688899999877521111       1100000         000000000                       


Q ss_pred             HhhhhccCCCccchhhhhhhhhhhhhhhhhhhhhhhccccccccccCCCCCccccccchhhHHHHHHHHHhcCccHHHHH
Q psy14299        241 NAVDCSRGSMTFSTLLCFDLQGLLHQANATAATYLFQQDKFYDVSFDTGDKSVQCGRKVDAFKLWLMWKARGNLGFRHFV  320 (448)
Q Consensus       241 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~  320 (448)
                                                                              +...+.++..+++... +|++++.
T Consensus       236 --------------------------------------------------------~~~~~~~~~~al~~~~-~~~~~~~  258 (382)
T 4eb5_A          236 --------------------------------------------------------NVPSIVGFGKAAEITA-MEWREEA  258 (382)
T ss_dssp             --------------------------------------------------------CHHHHHHHHHHHHHHH-HHHHHHH
T ss_pred             --------------------------------------------------------cHHHHHHHHHHHHHHH-HhHHHHH
Confidence                                                                    0011112222333322 2677888


Q ss_pred             HHHHHHHHHHHHHhhcCCCeEEeccCCc---eeeEEEEeeccCCCccccchhhhhhhhhhhHHHHHHHHhCCcEEEEeee
Q psy14299        321 DNAVDCSRYFLSQISQRPGFRLVIPEFQ---CTNICFWFIPVSLRDKVEDETWWSTLSKVAPRIKEKLVLGGTLMIGYQP  397 (448)
Q Consensus       321 ~~~~~l~~~~~~~L~~~pg~~l~~~~~~---~~~v~f~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~L~~~g~~~~~~~~  397 (448)
                      ++..++++++.+.|+++||++++ .++.   .+.+.|.+.  +.+               ..++.+.|.++|+ .+.++.
T Consensus       259 ~~~~~~~~~l~~~L~~~~~~~~~-~~~~~~~~~~~~~~~~--~~~---------------~~~~~~~l~~~gi-~v~~g~  319 (382)
T 4eb5_A          259 ERLRRLRDRIIDNVLKIEESYLN-GHPEKRLPNNVNVRFS--YIE---------------GESIVLSLDMAGI-QASTGS  319 (382)
T ss_dssp             HHHHHHHHHHHHHHTTSTTEEEC-SCSSSBCTTEEEEEET--TSC---------------HHHHHHHHHHHTC-BCBCCC
T ss_pred             HHHHHHHHHHHHHHhhCCCeEEe-CCcccCCCCEEEEEeC--CcC---------------HHHHHHHHHHCCE-EEeccc
Confidence            99999999999999999999986 4321   345566542  221               2367888888884 444332


Q ss_pred             cC--------------Cc---ccccEEEEEecCCCCCCHHHHHHHHHHHHHHHHHhHH
Q psy14299        398 LQ--------------HR---NLHNFFRLVTTCHPASSRQDMDYAIDQIELRGAEVDL  438 (448)
Q Consensus       398 ~~--------------g~---~~~~~lRis~~~~~~~t~edid~l~~al~~~~~~~~~  438 (448)
                      ..              |.   ...+++|+++  +.+++++|+++++++|+++.+++..
T Consensus       320 ~~~~~~~~~~~~~~~~g~~~~~~~~~iRi~~--~~~~~~~~i~~~~~~l~~~~~~~~~  375 (382)
T 4eb5_A          320 ACSSKTLQPSHVLMACGLKHEEAHGTLLLTL--GRYNTDEDVDRLLEVLPGVIERLRS  375 (382)
T ss_dssp             GGGTSSCCCCHHHHHTTCCHHHHTTEEEEEC--CTTCCHHHHHHHHHHHHHHHHHHHH
T ss_pred             cccCCCCcccHHHHHcCCChhccCCeEEEEC--CCCCCHHHHHHHHHHHHHHHHHHHH
Confidence            10              10   0137999999  6889999999999999999887654

>1kmj_A Selenocysteine lyase; persulfide perselenide NIFS pyridoxal phosphate, structural PSI, protein structure initiative; HET: PLP; 2.00A {Escherichia coli} SCOP: c.67.1.3 PDB: 1i29_A* 1jf9_A* 1kmk_A* 1c0n_A*

Probab=99.94  E-value=6.2e-25  Score=221.67  Aligned_cols=304  Identities=14%  Similarity=0.117  Sum_probs=209.4

Q ss_pred             cEEEeCcHHHHHHHHHHHHHHhcCCcccccCCCCCCCeEEEecCCCchHHH----HHHHHhCCCCCcEEEEecCCCCCcC
Q psy14299          4 KPFLLPGGSISNMYSICLARYRLDPDTKRKGLSHLPPLCMFTSEDSHYSML----KAAHWLGIGMDNVIRVKTNERGQMI   79 (448)
Q Consensus         4 ~g~~t~ggT~an~~al~~a~~~~~~~~~~~G~~~~~~~~Vl~~~~~H~s~~----~~~~~~g~~~~~v~~v~~~~~g~id   79 (448)
                      .++||+|||+++..++.++++...          .+++.|+++..+|++..    ..++..|.   +++.+|.++++.+|
T Consensus        87 ~v~~~~g~t~a~~~~~~~~~~~~~----------~~gd~vl~~~~~~~~~~~~~~~~~~~~g~---~~~~~~~~~~~~~d  153 (406)
T 1kmj_A           87 ELVFVRGTTEGINLVANSWGNSNV----------RAGDNIIISQMEHHANIVPWQMLCARVGA---ELRVIPLNPDGTLQ  153 (406)
T ss_dssp             GEEEESSHHHHHHHHHHHTHHHHC----------CTTCEEEEETTCCGGGTHHHHHHHHHHTC---EEEEECBCTTSCBC
T ss_pred             eEEEeCChhHHHHHHHHHhhhhcC----------CCCCEEEEecccchHHHHHHHHHHHhCCC---EEEEEecCCCCCcC
Confidence            579999999999999887752100          25677889999998754    34666788   78899998889999


Q ss_pred             HHHHHHHHHHhhhcCCCcEEEEEeccCCccccccCHHHHHHHHHHcCCEEEEecccccccccccchhhhhcCCCCccEEE
Q psy14299         80 CSFLEQTIQTSLAEKKIPLFVNATAGTTVLGAFDPLDEIATVCEKYDLWMHVDACWGGSLIFSEKYSFVLKGINRANSVS  159 (448)
Q Consensus        80 ~e~Le~~l~~~~~~~~~~~lVv~~~~~t~tG~~~~l~~I~~ia~~~g~~l~VD~A~~~~~~~~~~~~~~~~~~~~aD~~~  159 (448)
                      +++|++++++      ++++|++++++|++|.+.|+++|.++|++||+++++|++|+.+..+.+.     ... ..|+++
T Consensus       154 ~~~l~~~l~~------~~~~v~~~~~~nptG~~~~l~~i~~l~~~~~~~li~D~~~~~g~~~~~~-----~~~-~~d~~~  221 (406)
T 1kmj_A          154 LETLPTLFDE------KTRLLAITHVSNVLGTENPLAEMITLAHQHGAKVLVDGAQAVMHHPVDV-----QAL-DCDFYV  221 (406)
T ss_dssp             GGGHHHHCCT------TEEEEEEESBCTTTCCBCCHHHHHHHHHHTTCEEEEECTTTTTTSCCCH-----HHH-TCSEEE
T ss_pred             HHHHHHHhcc------CCeEEEEeCCCccccCcCCHHHHHHHHHHcCCEEEEEchhhcCCCCCcc-----ccc-CCCEEE
Confidence            9999999854      5789999999999999999999999999999999999999987653321     111 369999


Q ss_pred             ECCccccCCCCceEEEEEeccchhhhhccCCc--ccccccCcccccccCCCCCcccCCCCchhHHHHHHHHHhChHHHHH
Q psy14299        160 WNPHKMLGAPLQCSILLIKEKGLLHQANATAA--TYLFQQDKFYDVSFDTGDKSVQCGRKVDAFKLWLMWKARGNLGFRH  237 (448)
Q Consensus       160 ~s~hK~l~~P~g~G~l~vr~~~~~~~~~~~~~--~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~g~~~  237 (448)
                      .|+||++ +|.|+|++++++ ++.........  .+...........+......+..+                      
T Consensus       222 ~s~~K~~-g~~G~G~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------------------  277 (406)
T 1kmj_A          222 FSGHKLY-GPTGIGILYVKE-ALLQEMPPWEGGGSMIATVSLSEGTTWTKAPWRFEAG----------------------  277 (406)
T ss_dssp             EEGGGTT-SCTTCEEEEECH-HHHHHCCCSSCSTTSEEEEETTTEEEECCTTGGGCCS----------------------
T ss_pred             EEchhcc-CCCCcEEEEEeH-HHHhhcCCcccCCCceeecccccccccCCCchhccCC----------------------
Confidence            9999988 677799998864 33333221110  000000000000000000000000                      


Q ss_pred             HHHHhhhhccCCCccchhhhhhhhhhhhhhhhhhhhhhhccccccccccCCCCCccccccchhhHHHHHHHHHhcCccHH
Q psy14299        238 FVDNAVDCSRGSMTFSTLLCFDLQGLLHQANATAATYLFQQDKFYDVSFDTGDKSVQCGRKVDAFKLWLMWKARGNLGFR  317 (448)
Q Consensus       238 ~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~  317 (448)
                                                                               ..+...+.++..+++.+...|++
T Consensus       278 ---------------------------------------------------------~~~~~~~~a~~~al~~~~~~~~~  300 (406)
T 1kmj_A          278 ---------------------------------------------------------TPNTGGIIGLGAALEYVSALGLN  300 (406)
T ss_dssp             ---------------------------------------------------------SCCHHHHHHHHHHHHHHHHHCHH
T ss_pred             ---------------------------------------------------------CCCHHHHHHHHHHHHHHHHcCHH
Confidence                                                                     01112223333556666556888


Q ss_pred             HHHHHHHHHHHHHHHHhhcCCCeEEeccCC-ceeeEEEEeeccCCCccccchhhhhhhhhhhHHHHHHHHhCCcEEEEee
Q psy14299        318 HFVDNAVDCSRYFLSQISQRPGFRLVIPEF-QCTNICFWFIPVSLRDKVEDETWWSTLSKVAPRIKEKLVLGGTLMIGYQ  396 (448)
Q Consensus       318 ~~~~~~~~l~~~~~~~L~~~pg~~l~~~~~-~~~~v~f~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~L~~~g~~~~~~~  396 (448)
                      ++.++..++++++.+.|+++||++++ .+. ..+++.|.+ + +.+               ..++.+.|.++| +.+.++
T Consensus       301 ~~~~~~~~~~~~l~~~L~~~~~~~~~-~~~~~~~~~~~~~-~-~~~---------------~~~~~~~l~~~g-i~v~~g  361 (406)
T 1kmj_A          301 NIAEYEQNLMHYALSQLESVPDLTLY-GPQNRLGVIAFNL-G-KHH---------------AYDVGSFLDNYG-IAVRTG  361 (406)
T ss_dssp             HHHHHHHHHHHHHHHHHTTSTTEEEE-SCTTCCSEEEEEE-T-TCC---------------HHHHHHHHHHTT-EECEEE
T ss_pred             HHHHHHHHHHHHHHHHHhcCCCeEEe-cCCCcCCEEEEEE-C-CCC---------------HHHHHHHHhhCC-cEEEec
Confidence            99999999999999999999999987 432 567777754 2 221               136778888898 445443


Q ss_pred             ec--------CCcccccEEEEEecCCCCCCHHHHHHHHHHHHHHHHHh
Q psy14299        397 PL--------QHRNLHNFFRLVTTCHPASSRQDMDYAIDQIELRGAEV  436 (448)
Q Consensus       397 ~~--------~g~~~~~~lRis~~~~~~~t~edid~l~~al~~~~~~~  436 (448)
                      ..        .+  .++++|+++  +.++|++|+++++++|+++.+.+
T Consensus       362 ~~~~~~~~~~~g--~~~~iRis~--~~~~t~~~i~~~~~~l~~~~~~l  405 (406)
T 1kmj_A          362 HHCAMPLMAYYN--VPAMCRASL--AMYNTHEEVDRLVTGLQRIHRLL  405 (406)
T ss_dssp             CTTCHHHHHHTT--CSCEEEEEC--CTTCCHHHHHHHHHHHHHHHHHH
T ss_pred             cccchHHHHhcC--CCCeEEEEe--ecCCCHHHHHHHHHHHHHHHHhh
Confidence            21        12  137999999  67899999999999999987653

>1m32_A 2-aminoethylphosphonate-pyruvate aminotransferase; PLP-dependent aminotransferase fold; HET: PLP; 2.20A {Salmonella typhimurium} SCOP: c.67.1.3

Probab=99.94  E-value=4.5e-25  Score=219.37  Aligned_cols=300  Identities=13%  Similarity=0.137  Sum_probs=207.4

Q ss_pred             cEEEeCcHHHHHHHHHHHHHHhcCCcccccCCCCCCCeEEEecCCCchH-HHHHHHHhCCCCCcEEEEecCCCCCcCHHH
Q psy14299          4 KPFLLPGGSISNMYSICLARYRLDPDTKRKGLSHLPPLCMFTSEDSHYS-MLKAAHWLGIGMDNVIRVKTNERGQMICSF   82 (448)
Q Consensus         4 ~g~~t~ggT~an~~al~~a~~~~~~~~~~~G~~~~~~~~Vl~~~~~H~s-~~~~~~~~g~~~~~v~~v~~~~~g~id~e~   82 (448)
                      .+++|+|||+++..++.+++.+             .+.+++.+...|.+ +...+...|.   +++.++.++++.+|+++
T Consensus        58 ~v~~~~g~t~a~~~~~~~~~~~-------------gd~vi~~~~~~~~~~~~~~~~~~g~---~~~~v~~~~~~~~d~~~  121 (366)
T 1m32_A           58 SVLLQGSGSYAVEAVLGSALGP-------------QDKVLIVSNGAYGARMVEMAGLMGI---AHHAYDCGEVARPDVQA  121 (366)
T ss_dssp             EEEEESCHHHHHHHHHHHSCCT-------------TCCEEEEESSHHHHHHHHHHHHHTC---CEEEEECCTTSCCCHHH
T ss_pred             EEEEecChHHHHHHHHHHhcCC-------------CCeEEEEeCCCccHHHHHHHHHhCC---ceEEEeCCCCCCCCHHH
Confidence            4899999999999988776432             23345566688876 5677788888   78899998888999999


Q ss_pred             HHHHHHHhhhcCCCcEEEEEeccCCccccccCHHHHHHHHHHcCCEEEEecccccccccccchhhhhcCCCCccEEEECC
Q psy14299         83 LEQTIQTSLAEKKIPLFVNATAGTTVLGAFDPLDEIATVCEKYDLWMHVDACWGGSLIFSEKYSFVLKGINRANSVSWNP  162 (448)
Q Consensus        83 Le~~l~~~~~~~~~~~lVv~~~~~t~tG~~~~l~~I~~ia~~~g~~l~VD~A~~~~~~~~~~~~~~~~~~~~aD~~~~s~  162 (448)
                      |++++++.    .++++|++++++|++|.+.|+++|.++|++||+++|+|++|+.+..+.+     +... .+|+++.++
T Consensus       122 l~~~l~~~----~~~~~v~~~~~~nptG~~~~l~~i~~l~~~~~~~li~Dea~~~~~~~~~-----~~~~-~~di~~~s~  191 (366)
T 1m32_A          122 IDAILNAD----PTISHIAMVHSETTTGMLNPIDEVGALAHRYGKTYIVDAMSSFGGIPMD-----IAAL-HIDYLISSA  191 (366)
T ss_dssp             HHHHHHHC----TTCCEEEEESEETTTTEECCHHHHHHHHHHHTCEEEEECTTTTTTSCCC-----TTTT-TCSEEEEES
T ss_pred             HHHHHhcC----CCeEEEEEecccCCcceecCHHHHHHHHHHcCCEEEEECCccccCcCcc-----cccc-CccEEEecC
Confidence            99999762    2467899999999999999999999999999999999999997765332     1111 379999999


Q ss_pred             ccccCCCCceEEEEEeccchhhhhccCCcccccccCcccccccCCCCCcccCCCCchhHHHHHHHHHhChHHHHHHHHHh
Q psy14299        163 HKMLGAPLQCSILLIKEKGLLHQANATAATYLFQQDKFYDVSFDTGDKSVQCGRKVDAFKLWLMWKARGNLGFRHFVDNA  242 (448)
Q Consensus       163 hK~l~~P~g~G~l~vr~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~g~~~~i~~~  242 (448)
                      ||++++|.|+|+++++++ +.........++.....                       ..|   .     ++..     
T Consensus       192 ~K~~~~~~g~G~~~~~~~-~~~~~~~~~~~~~~~~~-----------------------~~~---~-----~~~~-----  234 (366)
T 1m32_A          192 NKCIQGVPGFAFVIAREQ-KLAACKGHSRSLSLDLY-----------------------AQW---R-----CMED-----  234 (366)
T ss_dssp             SSTTCCCSSEEEEEEEHH-HHTTCTTCCSCSTTCHH-----------------------HHH---H-----HHHH-----
T ss_pred             cccccCCCceEEEEECHH-HHHhhcCCCCCccccHH-----------------------HHH---h-----hhcc-----
Confidence            999999999999998764 33322111111111000                       000   0     0000     


Q ss_pred             hhhccCCCccchhhhhhhhhhhhhhhhhhhhhhhccccccccccCCCCCccccccchhhHHHHHHHHHhcCcc-HHHHHH
Q psy14299        243 VDCSRGSMTFSTLLCFDLQGLLHQANATAATYLFQQDKFYDVSFDTGDKSVQCGRKVDAFKLWLMWKARGNLG-FRHFVD  321 (448)
Q Consensus       243 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G-~~~~~~  321 (448)
                                                                   ..+..-.+.+...+.++..+++.....| ++++.+
T Consensus       235 ---------------------------------------------~~~~~~~~~~~~~~~a~~~al~~~~~~g~~~~~~~  269 (366)
T 1m32_A          235 ---------------------------------------------NHGKWRFTSPTHTVLAFAQALKELAKEGGVAARHQ  269 (366)
T ss_dssp             ---------------------------------------------TTTCCSSCCCHHHHHHHHHHHHHHHHHTHHHHHHH
T ss_pred             ---------------------------------------------cCCCCCCCCCHHHHHHHHHHHHHHHHccCHhHHHH
Confidence                                                         0000000122233444555666665666 888999


Q ss_pred             HHHHHHHHHHHHhhcCCCeEEeccC--Ccee-eEEEEeecc--CCCccccchhhhhhhhhhhHHHHHHHHhCCcEEEEee
Q psy14299        322 NAVDCSRYFLSQISQRPGFRLVIPE--FQCT-NICFWFIPV--SLRDKVEDETWWSTLSKVAPRIKEKLVLGGTLMIGYQ  396 (448)
Q Consensus       322 ~~~~l~~~~~~~L~~~pg~~l~~~~--~~~~-~v~f~~~~~--~~~~~~~~~~~~~~~~~~~~~i~~~L~~~g~~~~~~~  396 (448)
                      +..++++++.+.|+++ |++++ .+  +..+ .+.|.+ +.  +..               ..++.+.|.++| +.+.++
T Consensus       270 ~~~~~~~~l~~~L~~~-~~~~~-~~~~~~~~~~~~~~~-~~~~~~~---------------~~~~~~~l~~~g-i~v~~~  330 (366)
T 1m32_A          270 RYQQNQRSLVAGMRAL-GFNTL-LDDELHSPIITAFYS-PEDPQYR---------------FSEFYRRLKEQG-FVIYPG  330 (366)
T ss_dssp             HHHHHHHHHHHHHHHT-TCCBS-SCGGGBCSSEEEEEC-CCCTTCC---------------HHHHHHHHHHTT-EECEEC
T ss_pred             HHHHHHHHHHHHHHHC-CCeec-cCchhcCceEEEEEc-CccCCCC---------------HHHHHHHHHHCC-EEEECC
Confidence            9999999999999998 88875 43  2344 445543 21  111               237888999998 555544


Q ss_pred             ecCCcccccEEEEEecCCCCCCHHHHHHHHHHHHHHHHH
Q psy14299        397 PLQHRNLHNFFRLVTTCHPASSRQDMDYAIDQIELRGAE  435 (448)
Q Consensus       397 ~~~g~~~~~~lRis~~~~~~~t~edid~l~~al~~~~~~  435 (448)
                      ...+.   +++|+++  +.+++++|+++++++|+++.++
T Consensus       331 ~~~~~---~~iRi~~--~~~~~~~~i~~~~~~l~~~~~~  364 (366)
T 1m32_A          331 KVSQS---DCFRIGN--IGEVYAADITALLTAIRTAMYW  364 (366)
T ss_dssp             CCSSS---CEEEEEC--CSSCCHHHHHHHHHHHHHHCTT
T ss_pred             cCCCC---CEEEEec--CCCCCHHHHHHHHHHHHHHHHh
Confidence            33333   7999999  6789999999999999987653

>3isl_A Purine catabolism protein PUCG; pyridoxalphosphate, PLP dependent enzymes, purine metabolism transaminases, aminotransferases; HET: PLP; 2.06A {Bacillus subtilis}

Probab=99.94  E-value=2.7e-25  Score=225.47  Aligned_cols=316  Identities=14%  Similarity=0.097  Sum_probs=214.0

Q ss_pred             EEeCcHHHHHHHHHHHHHHhcCCcccccCCCCCCCeEEEecCCCchH--HHHHHHHhCCCCCcEEEEecCCCCCcCHHHH
Q psy14299          6 FLLPGGSISNMYSICLARYRLDPDTKRKGLSHLPPLCMFTSEDSHYS--MLKAAHWLGIGMDNVIRVKTNERGQMICSFL   83 (448)
Q Consensus         6 ~~t~ggT~an~~al~~a~~~~~~~~~~~G~~~~~~~~Vl~~~~~H~s--~~~~~~~~g~~~~~v~~v~~~~~g~id~e~L   83 (448)
                      ++++|||+++..++.+...              +++.|+++...|++  +...++..|.   +++.++.++++.+|+++|
T Consensus        66 ~~~~s~t~al~~~~~~l~~--------------~gd~Vl~~~~~~~~~~~~~~~~~~g~---~~~~v~~~~~~~~d~~~l  128 (416)
T 3isl_A           66 PIDGTSRAGIEAVLASVIE--------------PEDDVLIPIYGRFGYLLTEIAERYGA---NVHMLECEWGTVFDPEDI  128 (416)
T ss_dssp             EEESCHHHHHHHHHHHHCC--------------TTCEEEEEESSHHHHHHHHHHHHTTC---EEEEEECCTTCCCCHHHH
T ss_pred             EecCcHHHHHHHHHHHhcC--------------CCCEEEEecCCcccHHHHHHHHhcCC---eeEEEecCCCCCCCHHHH
Confidence            4889999999888776522              67788889899998  7778888888   899999999999999999


Q ss_pred             HHHHHHhhhcCCCcEEEEEeccCCccccccCHHHHHHHHHHcCCEEEEecccccccccccchhhhhcCCCCccEEEECCc
Q psy14299         84 EQTIQTSLAEKKIPLFVNATAGTTVLGAFDPLDEIATVCEKYDLWMHVDACWGGSLIFSEKYSFVLKGINRANSVSWNPH  163 (448)
Q Consensus        84 e~~l~~~~~~~~~~~lVv~~~~~t~tG~~~~l~~I~~ia~~~g~~l~VD~A~~~~~~~~~~~~~~~~~~~~aD~~~~s~h  163 (448)
                      ++++++.     ++++|++++++|++|.+.|+++|.++|++||+++|+|++|+.+....+..     .. .+|++++++|
T Consensus       129 ~~~i~~~-----~~~~v~~~~~~nptG~~~~l~~i~~l~~~~~~~li~D~a~~~~~~~~~~~-----~~-~~d~~~~s~~  197 (416)
T 3isl_A          129 IREIKKV-----KPKIVAMVHGETSTGRIHPLKAIGEACRTEDALFIVDAVATIGGCEVKVD-----EW-KIDAAIGGTQ  197 (416)
T ss_dssp             HHHHHHH-----CCSEEEEESEETTTTEECCCHHHHHHHHHTTCEEEEECTTTTTTSCCCTT-----TT-TCSEEECCSS
T ss_pred             HHHHhhC-----CCcEEEEEccCCCCceecCHHHHHHHHHHcCCEEEEECCccccCCCcchh-----hc-CCCEEEecCc
Confidence            9999742     47899999999999999999999999999999999999998776644321     11 4799999999


Q ss_pred             cccCCCCceEEEEEeccchhhhhccCC---cccccccCcccccccCCCCCcccCCCCchhHHHHHHHHHhChHHHHHHHH
Q psy14299        164 KMLGAPLQCSILLIKEKGLLHQANATA---ATYLFQQDKFYDVSFDTGDKSVQCGRKVDAFKLWLMWKARGNLGFRHFVD  240 (448)
Q Consensus       164 K~l~~P~g~G~l~vr~~~~~~~~~~~~---~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~g~~~~i~  240 (448)
                      ||+++|.|+|+++++++ .........   .+|.....    ..+..+....  ........           .+.... 
T Consensus       198 K~l~g~~g~g~~~~~~~-~~~~~~~~~~~~~Gw~~~~~----~~~~~gg~~~--~~~~~~~~-----------~~~~~~-  258 (416)
T 3isl_A          198 KCLSVPSGMAPITYNER-VADVIAARKKVERGIATQAD----RAALSGNRPI--TSNYFDLS-----------QLEDYW-  258 (416)
T ss_dssp             STTCCCSSEEEEEECHH-HHHHHHTC----------------------CCCC--SCSTTCHH-----------HHHHHT-
T ss_pred             cccCCCCCeEEEEECHH-HHHHhhcccccccccccccc----chhccCCCCC--CccccchH-----------HHHhhh-
Confidence            99999999999998664 333322111   11110000    0000000000  00000000           000000 


Q ss_pred             HhhhhccCCCccchhhhhhhhhhhhhhhhhhhhhhhccccccccccCCCCCccccccchhhHHHHHHHHHhcCccHHHHH
Q psy14299        241 NAVDCSRGSMTFSTLLCFDLQGLLHQANATAATYLFQQDKFYDVSFDTGDKSVQCGRKVDAFKLWLMWKARGNLGFRHFV  320 (448)
Q Consensus       241 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~  320 (448)
                                                                    ..........+...+.++..+++.....|++++.
T Consensus       259 ----------------------------------------------~~~~~~~~~~~~~~~~a~~~al~~~~~~g~~~~~  292 (416)
T 3isl_A          259 ----------------------------------------------SERRLNHHTEATTMLYALREGVRLVLEEGLETRF  292 (416)
T ss_dssp             ----------------------------------------------STTCCCSSCCCHHHHHHHHHHHHHHHHHCHHHHH
T ss_pred             ----------------------------------------------cccCCCCCCCCHHHHHHHHHHHHHHHHhhHHHHH
Confidence                                                          0000011122345566667788888888999999


Q ss_pred             HHHHHHHHHHHHHhhcCCCeEEeccCCc---eeeEEEEeeccCCCccccchhhhhhhhhhhHHHHHHHHhC-CcEEEEee
Q psy14299        321 DNAVDCSRYFLSQISQRPGFRLVIPEFQ---CTNICFWFIPVSLRDKVEDETWWSTLSKVAPRIKEKLVLG-GTLMIGYQ  396 (448)
Q Consensus       321 ~~~~~l~~~~~~~L~~~pg~~l~~~~~~---~~~v~f~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~L~~~-g~~~~~~~  396 (448)
                      ++..++++++.+.|+++ |++++ .++.   ..++.|.+ |.+.+               ..++.+.|.++ | +.+.++
T Consensus       293 ~~~~~~~~~l~~~L~~~-g~~~~-~~~~~~~~~~~~~~~-~~~~~---------------~~~l~~~L~~~~g-i~v~~g  353 (416)
T 3isl_A          293 ERHRHHEAALAAGIKAM-GLRLF-GDDSCKMPVVTCVEI-PGGID---------------GESVRDMLLAQFG-IEIASS  353 (416)
T ss_dssp             HHHHHHHHHHHHHHHHT-TCCBC-SCGGGBCTTEEEEEC-CTTCC---------------HHHHHHHHHHHHC-EECBCC
T ss_pred             HHHHHHHHHHHHHHHHc-CCEec-cCccccCCcEEEEeC-CCCCC---------------HHHHHHHHHHhCC-EEEecC
Confidence            99999999999999996 98886 4332   34555543 22222               23788889887 8 555443


Q ss_pred             ecCCcccccEEEEEecCCCCCCHHH-HHHHHHHHHHHHHHhH
Q psy14299        397 PLQHRNLHNFFRLVTTCHPASSRQD-MDYAIDQIELRGAEVD  437 (448)
Q Consensus       397 ~~~g~~~~~~lRis~~~~~~~t~ed-id~l~~al~~~~~~~~  437 (448)
                      ..  ...++++|+++  +.+++++| +++++++|+++.+++.
T Consensus       354 ~~--~~~~~~iRi~~--~~~~~~~e~i~~~~~~l~~~~~~~~  391 (416)
T 3isl_A          354 FG--PLAGKIWRIGT--MGYSCRKENVLFVLAGLEAVLLRHN  391 (416)
T ss_dssp             CS--TTTTTEEEEEC--CGGGCSHHHHHHHHHHHHHHHHHTT
T ss_pred             CC--CCCCCEEEEec--ccCCCcHHHHHHHHHHHHHHHHHcC
Confidence            21  11237999999  45666666 9999999999988764

>2z9v_A Aspartate aminotransferase; pyridoxamine, pyruvate; HET: PXM; 1.70A {Mesorhizobium loti} PDB: 2z9u_A* 2z9w_A* 2z9x_A*

Probab=99.94  E-value=1.5e-24  Score=218.53  Aligned_cols=301  Identities=11%  Similarity=0.049  Sum_probs=208.1

Q ss_pred             cEEEeCcHHHHHHHHHHHHHHhcCCcccccCCCCCCCeEEEecCCCchHH--HHHHHHhCCCCCcEEEEecCCCCCcCHH
Q psy14299          4 KPFLLPGGSISNMYSICLARYRLDPDTKRKGLSHLPPLCMFTSEDSHYSM--LKAAHWLGIGMDNVIRVKTNERGQMICS   81 (448)
Q Consensus         4 ~g~~t~ggT~an~~al~~a~~~~~~~~~~~G~~~~~~~~Vl~~~~~H~s~--~~~~~~~g~~~~~v~~v~~~~~g~id~e   81 (448)
                      .+++|+|||+++..++.++..              +++.|+++..+|++.  ...++..|.   +++.++.++++.+|++
T Consensus        61 ~v~~t~g~t~a~~~~~~~~~~--------------~gd~Vl~~~~~~~~~~~~~~~~~~g~---~~~~v~~~~~~~~d~~  123 (392)
T 2z9v_A           61 PVILHGEPVLGLEAAAASLIS--------------PDDVVLNLASGVYGKGFGYWAKRYSP---HLLEIEVPYNEAIDPQ  123 (392)
T ss_dssp             CEEESSCTHHHHHHHHHHHCC--------------TTCCEEEEESSHHHHHHHHHHHHHCS---CEEEEECCTTSCCCHH
T ss_pred             EEEEeCCchHHHHHHHHHhcC--------------CCCEEEEecCCcccHHHHHHHHHcCC---ceEEeeCCCCCCCCHH
Confidence            578999999999998877632              556788888999886  344455687   7899999888899999


Q ss_pred             HHHHHHHHhhhcCCCcEEEEEeccCCccccccCHHHHHHHHHHcCCEEEEecccccccccccchhhhhcCCCCccEEEEC
Q psy14299         82 FLEQTIQTSLAEKKIPLFVNATAGTTVLGAFDPLDEIATVCEKYDLWMHVDACWGGSLIFSEKYSFVLKGINRANSVSWN  161 (448)
Q Consensus        82 ~Le~~l~~~~~~~~~~~lVv~~~~~t~tG~~~~l~~I~~ia~~~g~~l~VD~A~~~~~~~~~~~~~~~~~~~~aD~~~~s  161 (448)
                      +|++++++.    .++++|++++++|++|.+.|+++|.++|++||+++|+|++|+.+..+.+.     ... .+|+++.|
T Consensus       124 ~l~~~l~~~----~~~~~v~~~~~~nptG~~~~l~~i~~l~~~~~~~li~D~a~~~g~~~~~~-----~~~-~~d~~~~s  193 (392)
T 2z9v_A          124 AVADMLKAH----PEITVVSVCHHDTPSGTINPIDAIGALVSAHGAYLIVDAVSSFGGMKTHP-----EDC-KADIYVTG  193 (392)
T ss_dssp             HHHHHHHHC----TTCCEEEEESEEGGGTEECCHHHHHHHHHHTTCEEEEECTTTBTTBSCCG-----GGG-TCSEEEEC
T ss_pred             HHHHHHhcC----CCCcEEEEeccCCCCceeccHHHHHHHHHHcCCeEEEEcccccCCccccc-----ccc-cceEEEec
Confidence            999999641    25789999999999999999999999999999999999999976654331     111 36999999


Q ss_pred             CccccCCCCceEEEEEeccchhhhhccCC--cc-cccccCcccccccCCCCCcccCCCCchhHHHHHHHHHhChHHHHHH
Q psy14299        162 PHKMLGAPLQCSILLIKEKGLLHQANATA--AT-YLFQQDKFYDVSFDTGDKSVQCGRKVDAFKLWLMWKARGNLGFRHF  238 (448)
Q Consensus       162 ~hK~l~~P~g~G~l~vr~~~~~~~~~~~~--~~-y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~g~~~~  238 (448)
                      +|||+++|.|+|+++++++ .........  ++ +.......      ...+  +....                     
T Consensus       194 ~sK~~~~~~g~G~l~~~~~-~~~~l~~~~~g~~~~~~~~~~~------~~~~--~~~~~---------------------  243 (392)
T 2z9v_A          194 PNKCLGAPPGLTMMGVSER-AWAKMKANPLAPRASMLSIVDW------ENAW--SRDKP---------------------  243 (392)
T ss_dssp             SSSTTCCCSCCEEEEECHH-HHHHHHTCTTSCCSSTTCSGGG------TTTT--STTSC---------------------
T ss_pred             CcccccCCCceeEEEECHH-HHHHhhhccCCCCceeccHHHH------Hhhh--cccCC---------------------
Confidence            9999999999999998654 333322110  10 11110000      0000  00000                     


Q ss_pred             HHHhhhhccCCCccchhhhhhhhhhhhhhhhhhhhhhhccccccccccCCCCCccccccchhhHHHHHHHHHhcCccHHH
Q psy14299        239 VDNAVDCSRGSMTFSTLLCFDLQGLLHQANATAATYLFQQDKFYDVSFDTGDKSVQCGRKVDAFKLWLMWKARGNLGFRH  318 (448)
Q Consensus       239 i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~  318 (448)
                                                                           .....+...+.++..+++.....|+++
T Consensus       244 -----------------------------------------------------~~~~~~~~~~~a~~~al~~~~~~g~~~  270 (392)
T 2z9v_A          244 -----------------------------------------------------FPFTPSVSEINGLDVALDLYLNEGPEA  270 (392)
T ss_dssp             -----------------------------------------------------CSSCCCHHHHHHHHHHHHHHHHHCHHH
T ss_pred             -----------------------------------------------------CCCCCCHHHHHHHHHHHHHHHhccHHH
Confidence                                                                 000011222334445566666667889


Q ss_pred             HHHHHHHHHHHHHHHhhcCCCeEEeccCC----ceeeEEEEeeccCCCccccchhhhhhhhhhhHHHHHHHHhC-CcEEE
Q psy14299        319 FVDNAVDCSRYFLSQISQRPGFRLVIPEF----QCTNICFWFIPVSLRDKVEDETWWSTLSKVAPRIKEKLVLG-GTLMI  393 (448)
Q Consensus       319 ~~~~~~~l~~~~~~~L~~~pg~~l~~~~~----~~~~v~f~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~L~~~-g~~~~  393 (448)
                      +.++..++++++.+.|+++ |++++ .++    ..+++.|.+ |.+.+               ..++.+.|.++ | +.+
T Consensus       271 ~~~~~~~~~~~l~~~L~~~-g~~~~-~~~~~~~~~~~~~~~~-~~~~~---------------~~~l~~~L~~~~g-i~v  331 (392)
T 2z9v_A          271 VWARHALTAKAMRAGVTAM-GLSVW-AASDSIASPTTTAVRT-PDGVD---------------EKALRQAARARYG-VVF  331 (392)
T ss_dssp             HHHHHHHHHHHHHHHHHHT-TCCBS-SSSGGGBCTTEEEEEC-CTTCC---------------HHHHHHHHHHHHC-EEC
T ss_pred             HHHHHHHHHHHHHHHHHHc-CCeec-cCCccccCCceEEEEC-CCCCC---------------HHHHHHHHHhcCC-EEE
Confidence            9999999999999999998 88876 423    234455544 22221               23688889887 8 444


Q ss_pred             Eeee-cCCcccccEEEEEecCCCCCCHHHHHHHHHHHHHHHHHhH
Q psy14299        394 GYQP-LQHRNLHNFFRLVTTCHPASSRQDMDYAIDQIELRGAEVD  437 (448)
Q Consensus       394 ~~~~-~~g~~~~~~lRis~~~~~~~t~edid~l~~al~~~~~~~~  437 (448)
                      .++. ..+   ++++|+++. .++++++|+++++++|+++.+++.
T Consensus       332 ~~g~~~~~---~~~lRi~~~-~~~~~~~~i~~~~~~l~~~~~~~~  372 (392)
T 2z9v_A          332 SSGRGETL---GKLTRIGHM-GPTAQPIYAIAALTALGGAMNAAG  372 (392)
T ss_dssp             EECCGGGT---TTEEEEECC-GGGCSHHHHHHHHHHHHHHHHHTT
T ss_pred             ecCCCCCC---CCeEEEeCc-ccccCHHHHHHHHHHHHHHHHHcC
Confidence            4432 112   379999973 348899999999999999988765

>1iug_A Putative aspartate aminotransferase; wild type, pyridoxal-5'-phosphate form, riken structural genomics/proteomics initiative, RSGI; HET: LLP; 2.20A {Thermus thermophilus} SCOP: c.67.1.3

Probab=99.93  E-value=8.1e-25  Score=216.79  Aligned_cols=291  Identities=13%  Similarity=0.034  Sum_probs=204.4

Q ss_pred             cEEEeCcHHHHHHHHHHHHHHhcCCcccccCCCCCCCeEEEecCCCchHHH--HHHHHhCCCCCcEEEEecCCCCCcCHH
Q psy14299          4 KPFLLPGGSISNMYSICLARYRLDPDTKRKGLSHLPPLCMFTSEDSHYSML--KAAHWLGIGMDNVIRVKTNERGQMICS   81 (448)
Q Consensus         4 ~g~~t~ggT~an~~al~~a~~~~~~~~~~~G~~~~~~~~Vl~~~~~H~s~~--~~~~~~g~~~~~v~~v~~~~~g~id~e   81 (448)
                      .+++|+|||+++..++.++..              +++.|+++..+|++..  ..++..|.   +++.++.++++.+|++
T Consensus        53 ~i~~~~g~t~a~~~~~~~~~~--------------~gd~vl~~~~~~~~~~~~~~~~~~g~---~~~~v~~~~~~~~d~~  115 (352)
T 1iug_A           53 VLILTGSGTLAMEALVKNLFA--------------PGERVLVPVYGKFSERFYEIALEAGL---VVERLDYPYGDTPRPE  115 (352)
T ss_dssp             EEEEESCHHHHHHHHHHHHCC--------------TTCEEEEEECSHHHHHHHHHHHHTTC---EEEEEECCTTCCCCTT
T ss_pred             eEEEcCchHHHHHHHHHhccC--------------CCCeEEEEeCCchhHHHHHHHHHcCC---ceEEEeCCCCCCCCHH
Confidence            578999999999998877633              5677888999999965  44455677   7899999888889998


Q ss_pred             HHHHHHHHhhhcCCCcEEEEEeccCCccccccCHHHHHHHHHHc--CCEEEEecccccccccccchhhhhcCCCCccEEE
Q psy14299         82 FLEQTIQTSLAEKKIPLFVNATAGTTVLGAFDPLDEIATVCEKY--DLWMHVDACWGGSLIFSEKYSFVLKGINRANSVS  159 (448)
Q Consensus        82 ~Le~~l~~~~~~~~~~~lVv~~~~~t~tG~~~~l~~I~~ia~~~--g~~l~VD~A~~~~~~~~~~~~~~~~~~~~aD~~~  159 (448)
                      +|++   +      ++++|++++++|++|.+.|+++|.++|++|  |+++|+|++|+.+..+.+.     ... .+|+++
T Consensus       116 ~l~~---~------~~~~v~~~~~~nptG~~~~l~~i~~l~~~~~~~~~li~D~a~~~~~~~~~~-----~~~-~~d~~~  180 (352)
T 1iug_A          116 DVAK---E------GYAGLLLVHSETSTGALADLPALARAFKEKNPEGLVGADMVTSLLVGEVAL-----EAM-GVDAAA  180 (352)
T ss_dssp             TSCC---S------SCSEEEEESEETTTTEECCHHHHHHHHHHHCTTCEEEEECTTTBTTBCCCS-----GGG-TCSEEE
T ss_pred             HHhc---c------CCcEEEEEEecCCcceecCHHHHHHHHHhhCCCCEEEEECCccccCcceec-----ccc-CeeEEE
Confidence            8876   2      477999999999999999999999999999  9999999999876554331     111 379999


Q ss_pred             ECCccccCCCCceEEEEEeccchhhhhccCCcccccccCcccccccCCCCCcccCCCCchhHHHHHHHHHhChHHHHHHH
Q psy14299        160 WNPHKMLGAPLQCSILLIKEKGLLHQANATAATYLFQQDKFYDVSFDTGDKSVQCGRKVDAFKLWLMWKARGNLGFRHFV  239 (448)
Q Consensus       160 ~s~hK~l~~P~g~G~l~vr~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~g~~~~i  239 (448)
                      .++|||+++|.|+|+++++++ .+.....  ..+...                                      +...+
T Consensus       181 ~s~~K~~~~~~g~G~~~~~~~-~~~~~~~--~~~~~~--------------------------------------~~~~~  219 (352)
T 1iug_A          181 SGSQKGLMCPPGLGFVALSPR-ALERLKP--RGYYLD--------------------------------------LAREL  219 (352)
T ss_dssp             EESSSTTCCCSCEEEEEECHH-HHHTCCC--CSSTTC--------------------------------------HHHHH
T ss_pred             ecCcccccCCCceeEEEECHH-HHHHhhC--CCceee--------------------------------------HHHHH
Confidence            999999999999999998654 3322211  111000                                      00000


Q ss_pred             HHhhhhccCCCccchhhhhhhhhhhhhhhhhhhhhhhccccccccccCCCCCccccccchhhHHHHHHHHHhcCccHHHH
Q psy14299        240 DNAVDCSRGSMTFSTLLCFDLQGLLHQANATAATYLFQQDKFYDVSFDTGDKSVQCGRKVDAFKLWLMWKARGNLGFRHF  319 (448)
Q Consensus       240 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~  319 (448)
                      ... .                                            ........+...+.++..+++..... ++++
T Consensus       220 ~~~-~--------------------------------------------~~~~~~~~~~~~~~a~~~al~~~~~~-~~~~  253 (352)
T 1iug_A          220 KAQ-K--------------------------------------------EGESAWTPAINLVLAVAAVLEEVLPR-LEEH  253 (352)
T ss_dssp             HHH-T--------------------------------------------TTCCSSCCCHHHHHHHHHHHHHHGGG-HHHH
T ss_pred             hhc-c--------------------------------------------cCCCCCCCCHHHHHHHHHHHHHHHHH-HHHH
Confidence            000 0                                            00000111233344455666665555 8889


Q ss_pred             HHHHHHHHHHHHHHhhcCCCeEEeccCC-ceeeEEEEeeccCCCccccchhhhhhhhhhhHHHHHHHHhCCcEEEEeeec
Q psy14299        320 VDNAVDCSRYFLSQISQRPGFRLVIPEF-QCTNICFWFIPVSLRDKVEDETWWSTLSKVAPRIKEKLVLGGTLMIGYQPL  398 (448)
Q Consensus       320 ~~~~~~l~~~~~~~L~~~pg~~l~~~~~-~~~~v~f~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~L~~~g~~~~~~~~~  398 (448)
                      .++..++++++.+.|+++ |++++ .+. ..+++.|.+ +.+.+               ..++.+.|.++| +.+.++..
T Consensus       254 ~~~~~~~~~~l~~~L~~~-g~~~~-~~~~~~~~~~~~~-~~~~~---------------~~~~~~~l~~~g-i~v~~~~~  314 (352)
T 1iug_A          254 LALKAWQNALLYGVGEEG-GLRPV-PKRFSPAVAAFYL-PEGVP---------------YARVKEAFAQRG-AVIAGGQG  314 (352)
T ss_dssp             HHHHHHHHHHHHHHHHHT-TCEES-CSSBCTTCEEEEC-CTTCC---------------HHHHHHHHHTTT-EECEECCG
T ss_pred             HHHHHHHHHHHHHHHHHC-CCccc-ccccCCeEEEEEc-CCCCC---------------HHHHHHHHHHCC-EEEEeCCC
Confidence            999999999999999998 99986 433 345556654 21221               237888999998 55544331


Q ss_pred             CCcccccEEEEEecCCCCCCHHHHHHHHHHHHHHHHHh
Q psy14299        399 QHRNLHNFFRLVTTCHPASSRQDMDYAIDQIELRGAEV  436 (448)
Q Consensus       399 ~g~~~~~~lRis~~~~~~~t~edid~l~~al~~~~~~~  436 (448)
                      .  ..++++|+++  +.+++++|+++++++|+++.+++
T Consensus       315 ~--~~~~~iRi~~--~~~~~~~~i~~~~~~l~~~~~~~  348 (352)
T 1iug_A          315 P--LKGKVFRLSL--MGAYDRYEALGVAGMFREVLEEI  348 (352)
T ss_dssp             G--GTTTEEEECC--CSSCCHHHHHHHHHHHHHHHHHH
T ss_pred             c--cCCCEEEEEc--cccCCHHHHHHHHHHHHHHHHHh
Confidence            1  1237999999  57889999999999999988754

>3ffr_A Phosphoserine aminotransferase SERC; structural genomics, JO center for structural genomics, JCSG, protein structure INI PSI-2; HET: LLP MSE P33; 1.75A {Cytophaga hutchinsonii atcc 33406}

Probab=99.93  E-value=3e-25  Score=220.52  Aligned_cols=292  Identities=13%  Similarity=0.105  Sum_probs=202.4

Q ss_pred             cEEEeCcHHHHHHHHHHHHHHhcCCcccccCCCCCCCeEEEecCCCchH--HHHHHHHhCCCCCcEEEEecCCCCCcCHH
Q psy14299          4 KPFLLPGGSISNMYSICLARYRLDPDTKRKGLSHLPPLCMFTSEDSHYS--MLKAAHWLGIGMDNVIRVKTNERGQMICS   81 (448)
Q Consensus         4 ~g~~t~ggT~an~~al~~a~~~~~~~~~~~G~~~~~~~~Vl~~~~~H~s--~~~~~~~~g~~~~~v~~v~~~~~g~id~e   81 (448)
                      .+++|+|||+++..++.+...              + . +++....|++  +...++..|.   +++.++.++++.+|++
T Consensus        63 ~v~~~~g~t~al~~~~~~l~~--------------~-~-~i~~~~~~~~~~~~~~~~~~g~---~~~~v~~~~~~~~d~~  123 (362)
T 3ffr_A           63 EVLFLASATEIWERIIQNCVE--------------K-K-SFHCVNGSFSKRFYEFAGELGR---EAYKEEAAFGKGFYPA  123 (362)
T ss_dssp             EEEEESCHHHHHHHHHHHHCS--------------S-E-EEEEECSHHHHHHHHHHHHTTC---EEEEEECCTTCCCCGG
T ss_pred             EEEEeCCchHHHHHHHHhccC--------------C-c-EEEEcCcHHHHHHHHHHHHhCC---CeEEEecCCCCCCCHH
Confidence            488999999999888876542              4 3 3444456666  3456667777   7899999888999999


Q ss_pred             HHHHHHHHhhhcCCCcEEEEEeccCCccccccCHHHHHHHHHHc-CCEEEEecccccccccccchhhhhcCCCCccEEEE
Q psy14299         82 FLEQTIQTSLAEKKIPLFVNATAGTTVLGAFDPLDEIATVCEKY-DLWMHVDACWGGSLIFSEKYSFVLKGINRANSVSW  160 (448)
Q Consensus        82 ~Le~~l~~~~~~~~~~~lVv~~~~~t~tG~~~~l~~I~~ia~~~-g~~l~VD~A~~~~~~~~~~~~~~~~~~~~aD~~~~  160 (448)
                      +|+  +.      .++++|++++++|++|.+.|+++|.++|++| |+++|+|++|+.+....+.        ..+|+++.
T Consensus       124 ~l~--~~------~~~~~v~~~~~~nptG~~~~l~~i~~la~~~p~~~li~D~a~~~~~~~~~~--------~~~d~~~~  187 (362)
T 3ffr_A          124 DIT--VP------ADAEIICLTHNETSSGVSMPVEDINTFRDKNKDALIFVDAVSSLPYPKFDW--------TKIDSVFF  187 (362)
T ss_dssp             GCC--CC------TTCCEEEEESEETTTTEECCHHHHTTSGGGSTTSEEEEECTTTTTSSCCCT--------TSCSEEEE
T ss_pred             HHh--cc------CCccEEEEEcCCCCcceeCCHHHHHHHHHhCCCCEEEEecccccCCcccCh--------hHCcEEEE
Confidence            998  32      3688999999999999999999999999999 9999999999877654321        12799999


Q ss_pred             CCccccCCCCceEEEEEeccchhhhhccCCcccccccCcccccccCCCCCcccCCCCchhHHHHHHHHHhChHHHHHHHH
Q psy14299        161 NPHKMLGAPLQCSILLIKEKGLLHQANATAATYLFQQDKFYDVSFDTGDKSVQCGRKVDAFKLWLMWKARGNLGFRHFVD  240 (448)
Q Consensus       161 s~hK~l~~P~g~G~l~vr~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~g~~~~i~  240 (448)
                      ++||++++|.|+|+++++++ +.........+   ...         ..+.      + .              +....+
T Consensus       188 s~~K~~~~~~G~g~~~~~~~-~~~~~~~~~~g---g~~---------~~~~------~-~--------------~~~~~~  233 (362)
T 3ffr_A          188 SVQKCFGLPAGLGVWILNDR-VIEKSKALLAK---RKS---------IGTY------H-T--------------IPSMLE  233 (362)
T ss_dssp             ETTSTTCCCSCCEEEEEEHH-HHHHHHHHHHT---TCC---------CCST------T-S--------------HHHHHH
T ss_pred             ecccccCCCCceEEEEECHH-HHHHhhhcccc---CCC---------Cccc------c-c--------------HHHHHH
Confidence            99999999999999888664 33322111000   000         0000      0 0              000000


Q ss_pred             HhhhhccCCCccchhhhhhhhhhhhhhhhhhhhhhhccccccccccCCCCCccccccchhhHHHHHHHHHhcCccHHHHH
Q psy14299        241 NAVDCSRGSMTFSTLLCFDLQGLLHQANATAATYLFQQDKFYDVSFDTGDKSVQCGRKVDAFKLWLMWKARGNLGFRHFV  320 (448)
Q Consensus       241 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~  320 (448)
                      ...                                             ......+.+...+.++..+++++..+|++++.
T Consensus       234 ~~~---------------------------------------------~~~~~~~~~~~~~~~~~~al~~~~~~~~~~~~  268 (362)
T 3ffr_A          234 KAR---------------------------------------------VNQTPETPNAMNIFLLGKVTGDMLQISADGIR  268 (362)
T ss_dssp             HHT---------------------------------------------TTCCSSCCCHHHHHHHHHHHHHHHHHCHHHHH
T ss_pred             Hhh---------------------------------------------cCCCCCCchHHHHHHHHHHHHHHHHccHHHHH
Confidence            000                                             00011223344556667778877777899999


Q ss_pred             HHHHHHHHHHHHHhhcCCCeEEecc-CC---ceeeEEEEeeccCCCccccchhhhhhhhhhhHHHHHHHHhCCcEEEEee
Q psy14299        321 DNAVDCSRYFLSQISQRPGFRLVIP-EF---QCTNICFWFIPVSLRDKVEDETWWSTLSKVAPRIKEKLVLGGTLMIGYQ  396 (448)
Q Consensus       321 ~~~~~l~~~~~~~L~~~pg~~l~~~-~~---~~~~v~f~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~L~~~g~~~~~~~  396 (448)
                      ++..++++++.+.|+++||++++ . ++   ...++.|.+ |.  +               ..++.+.|.++| +.+.++
T Consensus       269 ~~~~~~~~~l~~~L~~~~g~~~~-~~~~~~~~~~~~~~~~-~~--~---------------~~~~~~~l~~~g-i~~~~g  328 (362)
T 3ffr_A          269 KQTEEKAALINTYIESSKVFSFG-VEDAKLRSMTTIVANT-TM--L---------------PGEINKILEPFD-MAVGAG  328 (362)
T ss_dssp             HHHHHHHHHHHHHHHHCSSEEES-SSCGGGBCSSEEEEEE-SS--C---------------HHHHHHHHGGGT-EEEEEC
T ss_pred             HHHHHHHHHHHHHHHHccCceec-cCChhhcCCceEEEec-CC--C---------------HHHHHHHHHHCC-eEEecC
Confidence            99999999999999999999987 4 21   234455543 21  1               237889999998 545443


Q ss_pred             ecCCcccccEEEEEecCCCCCCHHHHHHHHHHHHHHH
Q psy14299        397 PLQHRNLHNFFRLVTTCHPASSRQDMDYAIDQIELRG  433 (448)
Q Consensus       397 ~~~g~~~~~~lRis~~~~~~~t~edid~l~~al~~~~  433 (448)
                      ...  ..++++|+++  +.+++++|+++++++|+++.
T Consensus       329 ~~~--~~~~~iRis~--~~~~~~e~i~~l~~~l~~~~  361 (362)
T 3ffr_A          329 YGS--KKETQIRIAN--FPAHSLEQVHKLVQTLKEKI  361 (362)
T ss_dssp             SGG--GTTTEEEEEC--CTTSCHHHHHHHHHHHHHHT
T ss_pred             ccc--cCCCEEEEEC--CCCCCHHHHHHHHHHHHHHh
Confidence            211  1137999999  67899999999999998763

>3e77_A Phosphoserine aminotransferase; SERC, PLP, structural genomi structural genomics consortium, SGC, amino-acid biosynthesi aminotransferase; HET: PLP; 2.50A {Homo sapiens}

Probab=99.93  E-value=1.7e-25  Score=225.53  Aligned_cols=292  Identities=12%  Similarity=-0.053  Sum_probs=199.7

Q ss_pred             cEEE-eCcHHHHHHHHHHHHHHhcCCcccccCCCCCCCeEEEecCCCchHHHHHHHHhCCCCCcEEEEecCCCCCcCHHH
Q psy14299          4 KPFL-LPGGSISNMYSICLARYRLDPDTKRKGLSHLPPLCMFTSEDSHYSMLKAAHWLGIGMDNVIRVKTNERGQMICSF   82 (448)
Q Consensus         4 ~g~~-t~ggT~an~~al~~a~~~~~~~~~~~G~~~~~~~~Vl~~~~~H~s~~~~~~~~g~~~~~v~~v~~~~~g~id~e~   82 (448)
                      ..+| |.|||+++.+++.....+            .+++.+++....|.+. .+++.+......+..++.++++.+++++
T Consensus        78 evif~t~~~T~a~n~a~~~l~~~------------~~Gd~v~~~~~g~~~~-~~~~~a~~~G~~~~~~~~~~~~~~~~~~  144 (377)
T 3e77_A           78 KVIFLQGGGCGQFSAVPLNLIGL------------KAGRCADYVVTGAWSA-KAAEEAKKFGTINIVHPKLGSYTKIPDP  144 (377)
T ss_dssp             EEEEESSHHHHHHHHHHHHHGGG------------STTCEEEECCCSHHHH-HHHHHHTTTSEEEECSCCCSSSCSCCCG
T ss_pred             eEEEEcCchHHHHHHHHHhccCC------------CCCCeEEEEECCHHHH-HHHHHHHHhCCceEEeccCCCcCCCCCh
Confidence            4788 589999988887665442            1345666666777764 3344332211156667877777778877


Q ss_pred             HHHHHHHhhhcCCCcEEEEEeccCCccccccCHHHHHHHHHHcCCEEEEecccccccccccchhhhhcCCCCccEEEECC
Q psy14299         83 LEQTIQTSLAEKKIPLFVNATAGTTVLGAFDPLDEIATVCEKYDLWMHVDACWGGSLIFSEKYSFVLKGINRANSVSWNP  162 (448)
Q Consensus        83 Le~~l~~~~~~~~~~~lVv~~~~~t~tG~~~~l~~I~~ia~~~g~~l~VD~A~~~~~~~~~~~~~~~~~~~~aD~~~~s~  162 (448)
                      ++..++      +++++|++++.+|.+|++.|+     +|+++|+++|||++++++..+++...        .|.+++++
T Consensus       145 ~~~~i~------~~t~lV~~~h~et~tG~~~pi-----i~~~~~~~~~vD~~q~~g~~~id~~~--------~~~~~~s~  205 (377)
T 3e77_A          145 STWNLN------PDASYVYYCANETVHGVEFDF-----IPDVKGAVLVCDMSSNFLSKPVDVSK--------FGVIFAGA  205 (377)
T ss_dssp             GGCCCC------TTCSCEEEESEETTTTEECSS-----CCCCTTCCEEEECTTTTTSSCCCGGG--------CSEEEEEG
T ss_pred             HHhccC------CCccEEEEeCccCchheEchh-----hhccCCCEEEEEcccccCCCCCchhh--------cCEEEEec
Confidence            765553      357899999999999999999     57889999999999999999776432        25789999


Q ss_pred             ccccCCCCceEEEEEeccchhhhhccCCcccccccCcccccccCCCCCcccCCCCchhHHHHHHHHHhChHHHHHHHHHh
Q psy14299        163 HKMLGAPLQCSILLIKEKGLLHQANATAATYLFQQDKFYDVSFDTGDKSVQCGRKVDAFKLWLMWKARGNLGFRHFVDNA  242 (448)
Q Consensus       163 hK~l~~P~g~G~l~vr~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~g~~~~i~~~  242 (448)
                      |||+ +|.|+|++++|++. +....+..+.|+....                                    ..+     
T Consensus       206 ~K~~-gp~G~g~l~~~~~~-l~~~~~~~p~~~~~~~------------------------------------~~~-----  242 (377)
T 3e77_A          206 QKNV-GSAGVTVVIVRDDL-LGFALRECPSVLEYKV------------------------------------QAG-----  242 (377)
T ss_dssp             GGTT-SCTTCEEEEEETTS-CSCCCTTSCGGGCHHH------------------------------------HHT-----
T ss_pred             cccc-CCCccEEEEEcHHH-HhhccCCCCchhhHHH------------------------------------Hhh-----
Confidence            9999 59999999998864 3322111122211000                                    000     


Q ss_pred             hhhccCCCccchhhhhhhhhhhhhhhhhhhhhhhccccccccccCCCCCccccccchhhHHHHHHHHHhcCc-cHHHHHH
Q psy14299        243 VDCSRGSMTFSTLLCFDLQGLLHQANATAATYLFQQDKFYDVSFDTGDKSVQCGRKVDAFKLWLMWKARGNL-GFRHFVD  321 (448)
Q Consensus       243 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-G~~~~~~  321 (448)
                                                                    ......-++...++++..+++++.++ |++.+.+
T Consensus       243 ----------------------------------------------~~~~~~Tp~v~~i~~l~~al~~l~~~GG~~~i~~  276 (377)
T 3e77_A          243 ----------------------------------------------NSSLYNTPPCFSIYVMGLVLEWIKNNGGAAAMEK  276 (377)
T ss_dssp             ----------------------------------------------TTTCSSCCCHHHHHHHHHHHHHHHHTTHHHHHHH
T ss_pred             ----------------------------------------------cCCCCCCchHHHHHHHHHHHHHHHHccCHHHHHH
Confidence                                                          00001122356677888899999888 8999999


Q ss_pred             HHHHHHHHHHHHhhcCCCeEEeccC--Ccee-eEEEEeeccCCCccccchhhhhhhhhhhHHHHHHHHhCCcEEEEeeec
Q psy14299        322 NAVDCSRYFLSQISQRPGFRLVIPE--FQCT-NICFWFIPVSLRDKVEDETWWSTLSKVAPRIKEKLVLGGTLMIGYQPL  398 (448)
Q Consensus       322 ~~~~l~~~~~~~L~~~pg~~l~~~~--~~~~-~v~f~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~L~~~g~~~~~~~~~  398 (448)
                      +..++++++++.|+++||+.+...+  .+++ +++|.+..  +...   .    .   +...+.+.|.++| +.+..+ .
T Consensus       277 ~~~~l~~~l~~~L~~~~g~~~~~~~~~~rs~~ivsf~~~~--~~~~---~----~---~~~~~l~~l~~~G-i~~~~g-~  342 (377)
T 3e77_A          277 LSSIKSQTIYEIIDNSQGFYVCPVEPQNRSKMNIPFRIGN--AKGD---D----A---LEKRFLDKALELN-MLSLKG-H  342 (377)
T ss_dssp             HHHHHHHHHHHHHHTSTTSEECCSCGGGBCSSEEEEEESS--TTCC---H----H---HHHHHHHHHHHTT-EESCBC-C
T ss_pred             HHHHHHHHHHHHHHhcCCceecCCCHHHcCCcEEEEEcCC--CCCc---h----h---HHHHHHHHHHHCC-cEEeCC-C
Confidence            9999999999999999999865212  2344 57887632  2100   0    1   1135777777888 433222 2


Q ss_pred             CCcccccEEEEEecCCCCCCHHHHHHHHHHHHHHHHH
Q psy14299        399 QHRNLHNFFRLVTTCHPASSRQDMDYAIDQIELRGAE  435 (448)
Q Consensus       399 ~g~~~~~~lRis~~~~~~~t~edid~l~~al~~~~~~  435 (448)
                      ...   +.+|+|+  +.++|+||||+|+++|+++.++
T Consensus       343 ~~~---g~iRiS~--~~~~t~edId~l~~al~~~~~~  374 (377)
T 3e77_A          343 RSV---GGIRASL--YNAVTIEDVQKLAAFMKKFLEM  374 (377)
T ss_dssp             TTT---CSEEEEC--CTTSCHHHHHHHHHHHHHHHHH
T ss_pred             CcC---CEEEEEC--CCCCCHHHHHHHHHHHHHHHHH
Confidence            222   5699999  6799999999999999999865

>2huf_A Alanine glyoxylate aminotransferase; alpha and beta protein, PLP-dependent transferase; HET: LLP; 1.75A {Aedes aegypti} PDB: 2hui_A* 2huu_A*

Probab=99.93  E-value=1.3e-24  Score=218.85  Aligned_cols=304  Identities=13%  Similarity=0.135  Sum_probs=207.1

Q ss_pred             cEEEeCcHHHHHHHHHHHHHHhcCCcccccCCCCCCCeEEEecCCCchHH--HHHHHHhCCCCCcEEEEecCCCCCcCHH
Q psy14299          4 KPFLLPGGSISNMYSICLARYRLDPDTKRKGLSHLPPLCMFTSEDSHYSM--LKAAHWLGIGMDNVIRVKTNERGQMICS   81 (448)
Q Consensus         4 ~g~~t~ggT~an~~al~~a~~~~~~~~~~~G~~~~~~~~Vl~~~~~H~s~--~~~~~~~g~~~~~v~~v~~~~~g~id~e   81 (448)
                      .+++|+|||+++..++.++..              +++.|+++..+|++.  ...++..|.   +++.++.++++.+|++
T Consensus        72 ~i~~~~g~t~a~~~~~~~~~~--------------~gd~vl~~~~~~~~~~~~~~~~~~g~---~~~~v~~~~~~~~d~~  134 (393)
T 2huf_A           72 TFCLSASGHGGMEATLCNLLE--------------DGDVILIGHTGHWGDRSADMATRYGA---DVRVVKSKVGQSLSLD  134 (393)
T ss_dssp             EEEESSCHHHHHHHHHHHHCC--------------TTCEEEEEESSHHHHHHHHHHHHTTC---EEEEEECCTTCCCCHH
T ss_pred             EEEEcCcHHHHHHHHHHHHhC--------------CCCEEEEECCCcchHHHHHHHHHcCC---eeEEEeCCCCCCCCHH
Confidence            478999999999998877632              566788888899884  334455677   7899999888899999


Q ss_pred             HHHHHHHHhhhcCCCcEEEEEeccCCccccccCHHHHHHHHHHcCCEEEEecccccccccccchhhhhcCCCCccEEEEC
Q psy14299         82 FLEQTIQTSLAEKKIPLFVNATAGTTVLGAFDPLDEIATVCEKYDLWMHVDACWGGSLIFSEKYSFVLKGINRANSVSWN  161 (448)
Q Consensus        82 ~Le~~l~~~~~~~~~~~lVv~~~~~t~tG~~~~l~~I~~ia~~~g~~l~VD~A~~~~~~~~~~~~~~~~~~~~aD~~~~s  161 (448)
                      +|++++++.     ++++|++++++|++|.+.|+++|.++|++||+++|+|++++.+..+.+     +... .+|+++.+
T Consensus       135 ~l~~~i~~~-----~~~~v~~~~~~nptG~~~~l~~i~~~~~~~~~~li~D~a~~~~~~~~~-----~~~~-~~d~~~~s  203 (393)
T 2huf_A          135 EIRDALLIH-----KPSVLFLTQGDSSTGVLQGLEGVGALCHQHNCLLIVDTVASLGGAPMF-----MDRW-EIDAMYTG  203 (393)
T ss_dssp             HHHHHHHHH-----CCSEEEEESEETTTTEECCCTTHHHHHHHTTCEEEEECTTTBTTBCCC-----TTTT-TCSEEECC
T ss_pred             HHHHHHhcc-----CCcEEEEEccCCCccccCCHHHHHHHHHHcCCEEEEEcccccCCCCcc-----hhhc-CccEEEEC
Confidence            999999752     478999999999999999999999999999999999999987654332     1111 37999999


Q ss_pred             CccccCCCCceEEEEEeccchhhhhccC---CcccccccCcccccccCCCCCcccCCCCchhHHHHHHHHHhChHHHHHH
Q psy14299        162 PHKMLGAPLQCSILLIKEKGLLHQANAT---AATYLFQQDKFYDVSFDTGDKSVQCGRKVDAFKLWLMWKARGNLGFRHF  238 (448)
Q Consensus       162 ~hK~l~~P~g~G~l~vr~~~~~~~~~~~---~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~g~~~~  238 (448)
                      +||++++|.|+|++++++ ++.......   ..+|+....                                   .... 
T Consensus       204 ~sK~l~g~~G~G~~~~~~-~~~~~~~~~~~~~~~~~~~~~-----------------------------------~~~~-  246 (393)
T 2huf_A          204 SQKVLGAPPGITPVSFSH-RAVERYKRRNTKVKVYYWDMS-----------------------------------LVGD-  246 (393)
T ss_dssp             SSSTTCCCSSCEEEEECH-HHHHHHHTCSSCCSCGGGCHH-----------------------------------HHHH-
T ss_pred             CCcccccCCCeEEEEECH-HHHHHHhhcCCCCceEEEchH-----------------------------------HHHh-
Confidence            999999999999998864 344333221   112111000                                   0000 


Q ss_pred             HHHhhhhccCCCccchhhhhhhhhhhhhhhhhhhhhhhccccccccccCCCCCccccccchhhHHHHHHHHHhcCccHHH
Q psy14299        239 VDNAVDCSRGSMTFSTLLCFDLQGLLHQANATAATYLFQQDKFYDVSFDTGDKSVQCGRKVDAFKLWLMWKARGNLGFRH  318 (448)
Q Consensus       239 i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~  318 (448)
                                                                ++.. ...........+...+.++..+++....+|+++
T Consensus       247 ------------------------------------------~~~~-~~~~~~~~~~~~~~~~~a~~~al~~~~~~~~~~  283 (393)
T 2huf_A          247 ------------------------------------------YWGC-FGRPRIYHHTISSTLLYGLREAIAMACEEGLPA  283 (393)
T ss_dssp             ------------------------------------------HTTC-SSSCCCCSCCCCHHHHHHHHHHHHHHHHHCHHH
T ss_pred             ------------------------------------------hhcc-ccccCCCCCCCCHHHHHHHHHHHHHHHHhCHHH
Confidence                                                      0000 000000001112333444555666666668899


Q ss_pred             HHHHHHHHHHHHHHHhhcCCCeEEeccCC--cee-eEEEEeeccCCCccccchhhhhhhhhhhHHHHHHHHhC-CcEEEE
Q psy14299        319 FVDNAVDCSRYFLSQISQRPGFRLVIPEF--QCT-NICFWFIPVSLRDKVEDETWWSTLSKVAPRIKEKLVLG-GTLMIG  394 (448)
Q Consensus       319 ~~~~~~~l~~~~~~~L~~~pg~~l~~~~~--~~~-~v~f~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~L~~~-g~~~~~  394 (448)
                      +.++..++++++.+.|+++ |++++ .++  ..+ ++.|.+ +.+.+               ..++.+.|.++ | +.+.
T Consensus       284 ~~~~~~~~~~~l~~~L~~~-g~~~~-~~~~~~~~~~~~~~~-~~~~~---------------~~~~~~~L~~~~g-i~v~  344 (393)
T 2huf_A          284 LIARHEDCAKRLYRGLQDA-GFELY-ADPKDRLSTVTTIKV-PQGVD---------------WLKAAQYAMKTYL-VEIS  344 (393)
T ss_dssp             HHHHHHHHHHHHHHHHHHT-TCCBS-SCGGGBCTTEEEEEC-CTTCC---------------HHHHHHHHHHHHC-EECB
T ss_pred             HHHHHHHHHHHHHHHHHHc-CCeec-cCccccCCcEEEEEc-CCCCC---------------HHHHHHHHHHhCC-EEEe
Confidence            9999999999999999998 88876 432  233 455543 21221               23678888765 8 5554


Q ss_pred             eeecCCcccccEEEEEecCCCCCCHHHHHHHHHHHHHHHHHhH
Q psy14299        395 YQPLQHRNLHNFFRLVTTCHPASSRQDMDYAIDQIELRGAEVD  437 (448)
Q Consensus       395 ~~~~~g~~~~~~lRis~~~~~~~t~edid~l~~al~~~~~~~~  437 (448)
                      ++....  .++++|++++ ++.++++|+++++++|+++.+++.
T Consensus       345 ~g~~~~--~~~~~Ri~~~-~~~~~~e~i~~~~~~l~~~~~~~~  384 (393)
T 2huf_A          345 GGLGPT--AGQVFRIGLM-GQNATTERVDRVLQVFQEAVAAVK  384 (393)
T ss_dssp             CCCGGG--TTTEEEEECC-GGGCSHHHHHHHHHHHHHHHHHHC
T ss_pred             cCcccc--cCCEEEEEcc-cCcCCHHHHHHHHHHHHHHHHHcC
Confidence            332211  1379999994 234579999999999999987654

>2yrr_A Aminotransferase, class V; structural genomics, NPPSFA, national PROJ protein structural and functional analyses; HET: PLP; 1.86A {Thermus thermophilus} PDB: 2yri_A*

Probab=99.93  E-value=1.1e-24  Score=215.32  Aligned_cols=293  Identities=13%  Similarity=0.087  Sum_probs=203.2

Q ss_pred             cEEEeCcHHHHHHHHHHHHHHhcCCcccccCCCCCCCeEEEecCCCchHH--HHHHHHhCCCCCcEEEEecCCCCCcCHH
Q psy14299          4 KPFLLPGGSISNMYSICLARYRLDPDTKRKGLSHLPPLCMFTSEDSHYSM--LKAAHWLGIGMDNVIRVKTNERGQMICS   81 (448)
Q Consensus         4 ~g~~t~ggT~an~~al~~a~~~~~~~~~~~G~~~~~~~~Vl~~~~~H~s~--~~~~~~~g~~~~~v~~v~~~~~g~id~e   81 (448)
                      .+++|+|||+++..++..++               + +.|+++..+|++.  ...++..|.   +++.+|.++++.+|++
T Consensus        54 ~v~~t~g~t~a~~~~~~~~~---------------~-d~vl~~~~~~~~~~~~~~~~~~g~---~~~~v~~~~~~~~d~~  114 (353)
T 2yrr_A           54 VAALAGSGSLGMEAGLANLD---------------R-GPVLVLVNGAFSQRVAEMAALHGL---DPEVLDFPPGEPVDPE  114 (353)
T ss_dssp             EEEESSCHHHHHHHHHHTCS---------------C-CCEEEEECSHHHHHHHHHHHHTTC---CEEEEECCTTSCCCHH
T ss_pred             eEEEcCCcHHHHHHHHHHhc---------------C-CcEEEEcCCCchHHHHHHHHHcCC---ceEEEeCCCCCCCCHH
Confidence            47899999999988875431               1 3477788889884  556677788   7999999888899999


Q ss_pred             HHHHHHHHhhhcCCCcEEEEEeccCCccccccCHHHHHHHHHHcCCEEEEecccccccccccchhhhhcCCCCccEEEEC
Q psy14299         82 FLEQTIQTSLAEKKIPLFVNATAGTTVLGAFDPLDEIATVCEKYDLWMHVDACWGGSLIFSEKYSFVLKGINRANSVSWN  161 (448)
Q Consensus        82 ~Le~~l~~~~~~~~~~~lVv~~~~~t~tG~~~~l~~I~~ia~~~g~~l~VD~A~~~~~~~~~~~~~~~~~~~~aD~~~~s  161 (448)
                      +|++.+++.     ++++|++++++|++|.+.|+++|.++|++||+++|+|++|+.+..+.+.     ... .+|+++++
T Consensus       115 ~l~~~l~~~-----~~~~v~~~~~~nptG~~~~~~~i~~l~~~~~~~li~D~a~~~~~~~~~~-----~~~-~~d~~~~s  183 (353)
T 2yrr_A          115 AVARALKRR-----RYRMVALVHGETSTGVLNPAEAIGALAKEAGALFFLDAVTTLGMLPFSM-----RAM-GVDYAFTG  183 (353)
T ss_dssp             HHHHHHHHS-----CCSEEEEESEETTTTEECCHHHHHHHHHHHTCEEEEECTTTTTTSCCCH-----HHH-TCSEEECC
T ss_pred             HHHHHHHhC-----CCCEEEEEccCCCcceecCHHHHHHHHHHcCCeEEEEcCcccccccccc-----ccc-CceEEEec
Confidence            999999751     4779999999999999999999999999999999999999866543321     111 36899999


Q ss_pred             CccccCCCCceEEEEEeccchhhhhccCCcccccccCcccccccCCCCCcccCCCCchhHHHHHHHHHhChHHHHHHHHH
Q psy14299        162 PHKMLGAPLQCSILLIKEKGLLHQANATAATYLFQQDKFYDVSFDTGDKSVQCGRKVDAFKLWLMWKARGNLGFRHFVDN  241 (448)
Q Consensus       162 ~hK~l~~P~g~G~l~vr~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~g~~~~i~~  241 (448)
                      +|||+++|.|+|+++++++ ....... .+.+.....                                   .+..... 
T Consensus       184 ~~K~~~~~~g~G~~~~~~~-~~~~l~~-~~~~~~~~~-----------------------------------~~~~~~~-  225 (353)
T 2yrr_A          184 SQKCLSAPPGLAPIAASLE-ARKAFTG-KRGWYLDLA-----------------------------------RVAEHWE-  225 (353)
T ss_dssp             TTSTTCCCSSCEEEEECHH-HHHHCCC-CSCSTTCHH-----------------------------------HHHHHHT-
T ss_pred             CcccccCCCceEEEEECHH-HHHHhcc-CCCccccHH-----------------------------------HHhhhhh-
Confidence            9999999999999998664 3332211 111110000                                   0000000 


Q ss_pred             hhhhccCCCccchhhhhhhhhhhhhhhhhhhhhhhccccccccccCCCCCccccccchhhHHHHHHHHHhcCccHHHHHH
Q psy14299        242 AVDCSRGSMTFSTLLCFDLQGLLHQANATAATYLFQQDKFYDVSFDTGDKSVQCGRKVDAFKLWLMWKARGNLGFRHFVD  321 (448)
Q Consensus       242 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~  321 (448)
                                                                     ........+...+.++..+++.....|++++.+
T Consensus       226 -----------------------------------------------~~~~~~~~~~~~~~a~~~al~~~~~~~~~~~~~  258 (353)
T 2yrr_A          226 -----------------------------------------------RGGYHHTTPVLLHYALLEALDLVLEEGVAARER  258 (353)
T ss_dssp             -----------------------------------------------TCCCSSCCCHHHHHHHHHHHHHHHHHCHHHHHH
T ss_pred             -----------------------------------------------cCCCCCCCCHHHHHHHHHHHHHHHHhhHHHHHH
Confidence                                                           000000111233444455666666678899999


Q ss_pred             HHHHHHHHHHHHhhcCCCeEEeccCC--ceeeEEEEeeccCCCccccchhhhhhhhhhhHHHHHHHHhCCcEEEEeeecC
Q psy14299        322 NAVDCSRYFLSQISQRPGFRLVIPEF--QCTNICFWFIPVSLRDKVEDETWWSTLSKVAPRIKEKLVLGGTLMIGYQPLQ  399 (448)
Q Consensus       322 ~~~~l~~~~~~~L~~~pg~~l~~~~~--~~~~v~f~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~L~~~g~~~~~~~~~~  399 (448)
                      +..++++++.+.|+++ |++++ .++  ...++.|.+ |.+.+               ..++.+.|.++| +.+.++...
T Consensus       259 ~~~~~~~~l~~~L~~~-g~~~~-~~~~~~~~~~~~~~-~~~~~---------------~~~~~~~l~~~g-i~v~~g~~~  319 (353)
T 2yrr_A          259 RAREVYAWVLEELKAR-GFRPY-PKASPLPTVLVVRP-PEGVD---------------ADRLVRALYAEG-VAVAGGIGP  319 (353)
T ss_dssp             HHHHHHHHHHHHHHHT-TCEES-CSSSBCTTEEEEEC-CTTCC---------------HHHHHHHHHHTT-EECEECCGG
T ss_pred             HHHHHHHHHHHHHHHC-CCccc-cCccCCCeEEEEEC-CCCCC---------------HHHHHHHHHHCC-EEEeCCccc
Confidence            9999999999999998 99987 433  233344543 22221               237888999998 444443211


Q ss_pred             CcccccEEEEEecCCCCCCHHHHH-HHHHHHHHHHH
Q psy14299        400 HRNLHNFFRLVTTCHPASSRQDMD-YAIDQIELRGA  434 (448)
Q Consensus       400 g~~~~~~lRis~~~~~~~t~edid-~l~~al~~~~~  434 (448)
                      .  .++++|+++  +.+++++|++ +++++|+++.+
T Consensus       320 ~--~~~~iRi~~--~~~~~~~~~~~~~~~~l~~~l~  351 (353)
T 2yrr_A          320 T--RGQVLRLGL--MGEGARREAYQAFLKALDRALA  351 (353)
T ss_dssp             G--TTTCEEEEC--SGGGSCHHHHHHHHHHHHHHHH
T ss_pred             c--CCCeEEEec--CccCCHHHHHHHHHHHHHHHHh
Confidence            1  136899999  5688999999 99999998764

>3lvm_A Cysteine desulfurase; structural genomics, montreal-kingston bacterial structural genomics initiative, BSGI, transferase; HET: PLP; 2.05A {Escherichia coli} PDB: 3lvk_A* 3lvl_B* 3lvj_A* 1p3w_B*

Probab=99.93  E-value=6.8e-24  Score=215.99  Aligned_cols=292  Identities=13%  Similarity=0.150  Sum_probs=202.1

Q ss_pred             cEEEeCcHHHHHHHHHHHHHHhcCCcccccCCCCCCCeEEEecCCCchHHHHHHHHh---CCCCCcEEEEecCCCCCcCH
Q psy14299          4 KPFLLPGGSISNMYSICLARYRLDPDTKRKGLSHLPPLCMFTSEDSHYSMLKAAHWL---GIGMDNVIRVKTNERGQMIC   80 (448)
Q Consensus         4 ~g~~t~ggT~an~~al~~a~~~~~~~~~~~G~~~~~~~~Vl~~~~~H~s~~~~~~~~---g~~~~~v~~v~~~~~g~id~   80 (448)
                      .++||+|||+|+..++.++++...          .+++.|+++..+|+++..++..+   |.   +++.++.++++.+|+
T Consensus        87 ~v~~~~ggt~a~~~a~~~l~~~~~----------~~gd~Vl~~~~~~~~~~~~~~~~~~~g~---~~~~v~~~~~~~~d~  153 (423)
T 3lvm_A           87 EIVFTSGATESDNLAIKGAANFYQ----------KKGKHIITSKTEHKAVLDTCRQLEREGF---EVTYLAPQRNGIIDL  153 (423)
T ss_dssp             GEEEESSHHHHHHHHHHHHHHHHT----------TTCCEEEEETTSCHHHHHHHHHHHHTTC---EEEEECCCTTSCCCH
T ss_pred             eEEEeCChHHHHHHHHHHHHHhhc----------cCCCEEEECCccchHHHHHHHHHHHcCC---EEEEeccCCCCccCH
Confidence            589999999999999887765221          15678999999999998888655   77   799999999999999


Q ss_pred             HHHHHHHHHhhhcCCCcEEEEEeccCCccccccCHHHHHHHHHHcCCEEEEecccccccccccchhhhhcCCCCccEEEE
Q psy14299         81 SFLEQTIQTSLAEKKIPLFVNATAGTTVLGAFDPLDEIATVCEKYDLWMHVDACWGGSLIFSEKYSFVLKGINRANSVSW  160 (448)
Q Consensus        81 e~Le~~l~~~~~~~~~~~lVv~~~~~t~tG~~~~l~~I~~ia~~~g~~l~VD~A~~~~~~~~~~~~~~~~~~~~aD~~~~  160 (448)
                      ++|++++++      ++++|++++++|++|.+.|+++|.++|++||+++++|++++.+..+.+..     .. .+|++++
T Consensus       154 ~~l~~~i~~------~~~~v~~~~~~nptG~~~~l~~i~~l~~~~~~~li~Dea~~~~~~~~~~~-----~~-~~di~~~  221 (423)
T 3lvm_A          154 KELEAAMRD------DTILVSIMHVNNEIGVVQDIAAIGEMCRARGIIYHVDATQSVGKLPIDLS-----QL-KVDLMSF  221 (423)
T ss_dssp             HHHHHHCCT------TEEEEECCSBCTTTCBBCCHHHHHHHHHHHTCEEEEECTTTTTTSCCCTT-----TS-CCSEEEE
T ss_pred             HHHHHhcCC------CcEEEEEeCCCCCCccccCHHHHHHHHHHcCCEEEEEhhhhcCCCCcChh-----hc-CCCEEEe
Confidence            999999964      57899999999999999999999999999999999999999876543321     11 4799999


Q ss_pred             CCccccCCCCceEEEEEeccchhhhhccCCcccccccCcccccccCCCCCcccCCCCchhHHHHHHHHHhChHHHHHHHH
Q psy14299        161 NPHKMLGAPLQCSILLIKEKGLLHQANATAATYLFQQDKFYDVSFDTGDKSVQCGRKVDAFKLWLMWKARGNLGFRHFVD  240 (448)
Q Consensus       161 s~hK~l~~P~g~G~l~vr~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~g~~~~i~  240 (448)
                      ++||+ ++|.|+|+++++++. .....    .+......         ......+..                       
T Consensus       222 s~sK~-~g~~g~G~~~~~~~~-~~~~~----~~~~~~~~---------~~~~~~~~~-----------------------  263 (423)
T 3lvm_A          222 SGHKI-YGPKGIGALYVRRKP-RVRIE----AQMHGGGH---------ERGMRSGTL-----------------------  263 (423)
T ss_dssp             ESTTT-TSCSSCEEEEECBTT-BCCCC----CSSCSSCT---------TTTTCCSCC-----------------------
T ss_pred             chHHh-cCCCCeEEEEEeccc-cCCCC----ccccCCcc---------cccccCCCC-----------------------
Confidence            99995 557789999987642 22111    11110000         000000000                       


Q ss_pred             HhhhhccCCCccchhhhhhhhhhhhhhhhhhhhhhhccccccccccCCCCCccccccchhhHHHHHHHHHhcCccHHHHH
Q psy14299        241 NAVDCSRGSMTFSTLLCFDLQGLLHQANATAATYLFQQDKFYDVSFDTGDKSVQCGRKVDAFKLWLMWKARGNLGFRHFV  320 (448)
Q Consensus       241 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~  320 (448)
                                                                              +.....++..+++..... ++++.
T Consensus       264 --------------------------------------------------------~~~~~~a~~~al~~~~~~-~~~~~  286 (423)
T 3lvm_A          264 --------------------------------------------------------PVHQIVGMGEAYRIAKEE-MATEM  286 (423)
T ss_dssp             --------------------------------------------------------CHHHHHHHHHHHHHHHHH-HHHHH
T ss_pred             --------------------------------------------------------CHHHHHHHHHHHHHHHHH-HHHHH
Confidence                                                                    011111222223322222 67788


Q ss_pred             HHHHHHHHHHHHHhhcCCCeEEeccCCc---eeeEEEEeeccCCCccccchhhhhhhhhhhHHHHHHHHhCCcEEEEeee
Q psy14299        321 DNAVDCSRYFLSQISQRPGFRLVIPEFQ---CTNICFWFIPVSLRDKVEDETWWSTLSKVAPRIKEKLVLGGTLMIGYQP  397 (448)
Q Consensus       321 ~~~~~l~~~~~~~L~~~pg~~l~~~~~~---~~~v~f~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~L~~~g~~~~~~~~  397 (448)
                      ++..++++++.+.|+++||++++ .++.   .+.+.|.+.  +.+               ..++.+.|.+   +.+.++.
T Consensus       287 ~~~~~~~~~l~~~L~~~~~~~~~-~~~~~~~~~~~~~~~~--~~~---------------~~~l~~~l~~---i~v~~g~  345 (423)
T 3lvm_A          287 ERLRGLRNRLWNGIKDIEEVYLN-GDLEHGAPNILNVSFN--YVE---------------GESLIMALKD---LAVSSGS  345 (423)
T ss_dssp             HHHHHHHHHHHHHHTTSTTEEEE-SCSTTBCTTEEEEEET--TSC---------------HHHHHHHTTT---EECBCCC
T ss_pred             HHHHHHHHHHHHHHhcCCCEEEe-CCccccCCCeEEEEeC--CCC---------------HHHHHHHHhh---heeccCc
Confidence            89999999999999999999987 4432   345666552  221               1256666655   3333321


Q ss_pred             cC--------------Cc---ccccEEEEEecCCCCCCHHHHHHHHHHHHHHHHHhHH
Q psy14299        398 LQ--------------HR---NLHNFFRLVTTCHPASSRQDMDYAIDQIELRGAEVDL  438 (448)
Q Consensus       398 ~~--------------g~---~~~~~lRis~~~~~~~t~edid~l~~al~~~~~~~~~  438 (448)
                      ..              +.   ..++++|+++  +..++++|+++++++|+++.+++..
T Consensus       346 ~~~~~~~~~~~~~~~~g~~~~~~~~~iRi~~--~~~~t~e~i~~~~~~l~~~~~~~~~  401 (423)
T 3lvm_A          346 ACTSASLEPSYVLRALGLNDELAHSSIRFSL--GRFTTEEEIDYTIELVRKSIGRLRD  401 (423)
T ss_dssp             C-----CCCCHHHHHHTCCHHHHHTEEEEEC--CTTCCHHHHHHHHHHHHHHHHHHHT
T ss_pred             cccCCCccccHHHHHhCCCccccCceEEEEC--CCCCCHHHHHHHHHHHHHHHHHhhc
Confidence            10              00   0137899999  6789999999999999999887654

>3f0h_A Aminotransferase; RER070207000802, structural genomics, JOIN for structural genomics, JCSG; HET: MSE LLP; 1.70A {Eubacterium rectale}

Probab=99.93  E-value=3.1e-24  Score=214.95  Aligned_cols=293  Identities=13%  Similarity=0.044  Sum_probs=198.6

Q ss_pred             EEeCcHHHHHHHHHHHHHHhcCCcccccCCCCCCCeEEEecCCCchHH--HHHHHHhCCCCCcEEEEecCCCCCcCHHHH
Q psy14299          6 FLLPGGSISNMYSICLARYRLDPDTKRKGLSHLPPLCMFTSEDSHYSM--LKAAHWLGIGMDNVIRVKTNERGQMICSFL   83 (448)
Q Consensus         6 ~~t~ggT~an~~al~~a~~~~~~~~~~~G~~~~~~~~Vl~~~~~H~s~--~~~~~~~g~~~~~v~~v~~~~~g~id~e~L   83 (448)
                      ++|+|||+++..++.++..              +++.|+++...+++.  ...+...|.   ++..++.++++.+|+++|
T Consensus        75 ~~~~ggt~al~~~~~~~~~--------------~gd~vi~~~~~~~~~~~~~~~~~~g~---~~~~v~~~~~~~~d~~~l  137 (376)
T 3f0h_A           75 FMTCSSTGSMEAVVMNCFT--------------KKDKVLVIDGGSFGHRFVQLCEIHEI---PYVALKLEHGKKLTKEKL  137 (376)
T ss_dssp             EESSCHHHHHHHHHHHHCC--------------TTCCEEEEESSHHHHHHHHHHHHTTC---CEEEEECCTTCCCCHHHH
T ss_pred             EEcCChhHHHHHHHHhccC--------------CCCeEEEEeCChhhHHHHHHHHHcCC---ceEEEeCCCCCCCCHHHH
Confidence            4488999999888877643              455566665555543  245566677   788999988899999999


Q ss_pred             HHHHHHhhhcCCCcEEEEEeccCCccccccCHHHHHHHHHHcCCEEEEecccccccccccchhhhhcCCCCccEEEECCc
Q psy14299         84 EQTIQTSLAEKKIPLFVNATAGTTVLGAFDPLDEIATVCEKYDLWMHVDACWGGSLIFSEKYSFVLKGINRANSVSWNPH  163 (448)
Q Consensus        84 e~~l~~~~~~~~~~~lVv~~~~~t~tG~~~~l~~I~~ia~~~g~~l~VD~A~~~~~~~~~~~~~~~~~~~~aD~~~~s~h  163 (448)
                      ++++++      ++++|++++++|++|.+.|+++|.++|++||+++++|++++.+....+....      .+|++++++|
T Consensus       138 ~~~~~~------~~~~v~~~~~~nptG~~~~l~~i~~l~~~~~~~li~D~~~~~~~~~~~~~~~------~~d~~~~s~~  205 (376)
T 3f0h_A          138 YEYDNQ------NFTGLLVNVDETSTAVLYDTMMIGEFCKKNNMFFVCDCVSAFLADPFNMNEC------GADVMITGSQ  205 (376)
T ss_dssp             HTTTTS------CCCEEEEESEETTTTEECCHHHHHHHHHHTTCEEEEECTTTTTTSCCCHHHH------TCSEEEEETT
T ss_pred             HHhhcc------CceEEEEecccCCcceecCHHHHHHHHHHcCCEEEEEcCccccCcccccccc------CccEEEecCc
Confidence            987633      5789999999999999999999999999999999999999987654332111      3689999999


Q ss_pred             cccCCCCceEEEEEeccchhhhhcc-CCcccccccCcccccccCCCCCcccCCCCchhHHHHHHHHHhChHHHHHHHHHh
Q psy14299        164 KMLGAPLQCSILLIKEKGLLHQANA-TAATYLFQQDKFYDVSFDTGDKSVQCGRKVDAFKLWLMWKARGNLGFRHFVDNA  242 (448)
Q Consensus       164 K~l~~P~g~G~l~vr~~~~~~~~~~-~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~g~~~~i~~~  242 (448)
                      |++++|.|+|+++++++ ....... ...++.....                                   .+..   ..
T Consensus       206 K~l~~~~G~g~~~~~~~-~~~~~~~~~~~~~~~~~~-----------------------------------~~~~---~~  246 (376)
T 3f0h_A          206 KVLACPPGISVIVLAPR-GVERVEKSKVRTMYFDLK-----------------------------------DALK---NQ  246 (376)
T ss_dssp             TTTCCCSSCEEEEECHH-HHHHHHTCCCCCSTTCHH-----------------------------------HHHH---HH
T ss_pred             ccccCCCceEEEEECHH-HHHHhhcCCCCceeecHH-----------------------------------HHHh---hc
Confidence            99998999999888664 3333221 1111110000                                   0000   00


Q ss_pred             hhhccCCCccchhhhhhhhhhhhhhhhhhhhhhhccccccccccCCCCCccccccchhhHHHHHHHHHhcCc-cHHHHHH
Q psy14299        243 VDCSRGSMTFSTLLCFDLQGLLHQANATAATYLFQQDKFYDVSFDTGDKSVQCGRKVDAFKLWLMWKARGNL-GFRHFVD  321 (448)
Q Consensus       243 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-G~~~~~~  321 (448)
                      ..                                             ...........+.++..+++++..+ |++++.+
T Consensus       247 ~~---------------------------------------------~~~~~~~~~~~~~a~~~al~~~~~~~~~~~~~~  281 (376)
T 3f0h_A          247 ER---------------------------------------------GQTPFTPAVGILLQINERLKEIKKHGGADAEVA  281 (376)
T ss_dssp             TT---------------------------------------------TCCSSCCCHHHHHHHHHHHHHHHHTTHHHHHHH
T ss_pred             cc---------------------------------------------CCCCCCCcHHHHHHHHHHHHHHHHhcCHHHHHH
Confidence            00                                             0000001111224455666666666 7999999


Q ss_pred             HHHHHHHHHHHHhhcCCCeEEeccCCceeeEEEEeeccCCCccccchhhhhhhhhhhHHHHHHHHhC-CcEEEEeeecCC
Q psy14299        322 NAVDCSRYFLSQISQRPGFRLVIPEFQCTNICFWFIPVSLRDKVEDETWWSTLSKVAPRIKEKLVLG-GTLMIGYQPLQH  400 (448)
Q Consensus       322 ~~~~l~~~~~~~L~~~pg~~l~~~~~~~~~v~f~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~L~~~-g~~~~~~~~~~g  400 (448)
                      +..++++++.+.|+++ ++++. .+.....+ +.+.+.+.+               ..++.+.|.++ | +.+.++.  +
T Consensus       282 ~~~~~~~~l~~~L~~~-~~~~~-~~~~~~~~-~~~~~~~~~---------------~~~l~~~l~~~~g-i~v~~g~--~  340 (376)
T 3f0h_A          282 RIASQAADFRAKIKDL-PFELV-SESPANGV-TSVHPTTAN---------------AYDIFLKLKDEYG-IWICPNG--G  340 (376)
T ss_dssp             HHHHHHHHHHHHTTTS-SEEEC-CSSBBTTE-EEEEESSSC---------------HHHHHHHHHHHSS-EECEECC--G
T ss_pred             HHHHHHHHHHHHHHHc-CCccC-ccccCceE-EEEeCCCCC---------------HHHHHHHHHHhCC-EEEecCc--c
Confidence            9999999999999998 78876 43333322 222233332               23788899988 7 5554432  1


Q ss_pred             cccccEEEEEecCCCCCCHHHHHHHHHHHHHHHH
Q psy14299        401 RNLHNFFRLVTTCHPASSRQDMDYAIDQIELRGA  434 (448)
Q Consensus       401 ~~~~~~lRis~~~~~~~t~edid~l~~al~~~~~  434 (448)
                      ...++++|+++  +.++|++|+++++++|+++.+
T Consensus       341 ~~~~~~lRis~--~~~~t~e~i~~~~~~l~~~l~  372 (376)
T 3f0h_A          341 EMKDTIFRVGH--IGALTHEDNTTLVNAFKDLQK  372 (376)
T ss_dssp             GGTTTCEEEEC--CSSCCHHHHHHHHHHHHHHHH
T ss_pred             ccCCCEEEEec--CCCCCHHHHHHHHHHHHHHHH
Confidence            11237999999  678999999999999998875

>3kgw_A Alanine-glyoxylate aminotransferase; AAH25799.1, putative aminotransferase, structural genomics, center for structural genomics, JCSG; HET: PLP; 1.65A {Mus musculus} SCOP: c.67.1.3 PDB: 3kgx_A 3imz_A* 3r9a_A* 1h0c_A* 1j04_A*

Probab=99.93  E-value=1.6e-24  Score=217.64  Aligned_cols=307  Identities=11%  Similarity=0.099  Sum_probs=210.9

Q ss_pred             cEEEeCcHHHHHHHHHHHHHHhcCCcccccCCCCCCCeEEEecCCCchH--HHHHHHHhCCCCCcEEEEecCCCCCcCHH
Q psy14299          4 KPFLLPGGSISNMYSICLARYRLDPDTKRKGLSHLPPLCMFTSEDSHYS--MLKAAHWLGIGMDNVIRVKTNERGQMICS   81 (448)
Q Consensus         4 ~g~~t~ggT~an~~al~~a~~~~~~~~~~~G~~~~~~~~Vl~~~~~H~s--~~~~~~~~g~~~~~v~~v~~~~~g~id~e   81 (448)
                      .+++|+|||+++..++.++..              +++.|+++...|++  +...++..|.   +++.++.++++.+|++
T Consensus        76 ~v~~~~gg~~al~~~~~~~~~--------------~gd~vl~~~~~~~~~~~~~~~~~~g~---~~~~~~~~~~~~~d~~  138 (393)
T 3kgw_A           76 TLVVSGSGHCAMETALFNLLE--------------PGDSFLTGTNGIWGMRAAEIADRIGA---RVHQMIKKPGEHYTLQ  138 (393)
T ss_dssp             EEEESCCTTTHHHHHHHHHCC--------------TTCEEEEEESSHHHHHHHHHHHHTTC---EEEEEECCTTCCCCHH
T ss_pred             EEEEeCCcHHHHHHHHHhcCC--------------CCCEEEEEeCCchhHHHHHHHHHcCC---ceEEEeCCCCCCCCHH
Confidence            378999999999888877633              56678888778763  4677778888   7899999888999999


Q ss_pred             HHHHHHHHhhhcCCCcEEEEEeccCCccccccCHHHHHHHHHHcCCEEEEecccccccccccchhhhhcCCCCccEEEEC
Q psy14299         82 FLEQTIQTSLAEKKIPLFVNATAGTTVLGAFDPLDEIATVCEKYDLWMHVDACWGGSLIFSEKYSFVLKGINRANSVSWN  161 (448)
Q Consensus        82 ~Le~~l~~~~~~~~~~~lVv~~~~~t~tG~~~~l~~I~~ia~~~g~~l~VD~A~~~~~~~~~~~~~~~~~~~~aD~~~~s  161 (448)
                      +|++++++.     ++++|++++++|++|.+.|+++|.++|++||+++++|++|+.+....+..     . ..+|+++++
T Consensus       139 ~l~~~i~~~-----~~~~v~~~~~~nptG~~~~l~~i~~l~~~~~~~li~De~~~~g~~~~~~~-----~-~~~d~~~~s  207 (393)
T 3kgw_A          139 EVEEGLAQH-----KPVLLFLVHGESSTGVVQPLDGFGELCHRYQCLLLVDSVASLGGVPIYMD-----Q-QGIDIMYSS  207 (393)
T ss_dssp             HHHHHHHHH-----CCSEEEEESEETTTTEECCCTTHHHHHHHTTCEEEEECTTTTTTSCCCTT-----T-TTCCEEEEE
T ss_pred             HHHHHHhhC-----CCcEEEEeccCCcchhhccHHHHHHHHHHcCCEEEEECCccccCcccchh-----h-cCCCEEEec
Confidence            999999762     47899999999999999999999999999999999999998665433211     1 147999999


Q ss_pred             CccccCCCCceEEEEEeccchhhhhccCCcccccccCcccccccCCCCCcccCCCCchhHHHHHHHHHhChHHHHHHHHH
Q psy14299        162 PHKMLGAPLQCSILLIKEKGLLHQANATAATYLFQQDKFYDVSFDTGDKSVQCGRKVDAFKLWLMWKARGNLGFRHFVDN  241 (448)
Q Consensus       162 ~hK~l~~P~g~G~l~vr~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~g~~~~i~~  241 (448)
                      +||++++|.|+|+++++++ .............   .    .   +.+                      ...+...   
T Consensus       208 ~sK~~~~~~g~g~~~~~~~-~~~~~~~~~~~~~---~----~---~~~----------------------~~~~~~~---  251 (393)
T 3kgw_A          208 SQKVLNAPPGISLISFNDK-AKYKVYSRKTKPV---S----F---YTD----------------------ITYLAKL---  251 (393)
T ss_dssp             SSSTTCCCSSCEEEEECHH-HHHHHHTCSSCCS---C----S---TTC----------------------HHHHHHH---
T ss_pred             CcccccCCCceeEEEECHH-HHHHHhccCCCCC---c----e---eec----------------------HHHHHHh---
Confidence            9999999999999998664 3333221111000   0    0   000                      0000000   


Q ss_pred             hhhhccCCCccchhhhhhhhhhhhhhhhhhhhhhhccccccccccCCCCCccccccchhhHHHHHHHHHhcCccHHHHHH
Q psy14299        242 AVDCSRGSMTFSTLLCFDLQGLLHQANATAATYLFQQDKFYDVSFDTGDKSVQCGRKVDAFKLWLMWKARGNLGFRHFVD  321 (448)
Q Consensus       242 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~  321 (448)
                                                              +.. ...........+...+.++..+++....+|++++.+
T Consensus       252 ----------------------------------------~~~-~~~~~~~~~~~~~~~~~a~~~al~~~~~~~~~~~~~  290 (393)
T 3kgw_A          252 ----------------------------------------WGC-EGETRVIHHTTPVTSLYCLRESLALIAEQGLENCWR  290 (393)
T ss_dssp             ----------------------------------------TTC-SSSCCCCCCCCCHHHHHHHHHHHHHHHHHCHHHHHH
T ss_pred             ----------------------------------------hhh-ccccCCCCCCCCHHHHHHHHHHHHHHHHhhHHHHHH
Confidence                                                    000 000000111122344555666777777788999999


Q ss_pred             HHHHHHHHHHHHhhcCCCeEEeccCC---ceeeE-EEEeeccCCCccccchhhhhhhhhhhHHHHHHHHhC-CcEEEEee
Q psy14299        322 NAVDCSRYFLSQISQRPGFRLVIPEF---QCTNI-CFWFIPVSLRDKVEDETWWSTLSKVAPRIKEKLVLG-GTLMIGYQ  396 (448)
Q Consensus       322 ~~~~l~~~~~~~L~~~pg~~l~~~~~---~~~~v-~f~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~L~~~-g~~~~~~~  396 (448)
                      +..++++++.+.|+++ |++++ .+.   ..+.+ .|.+ |.+.+               ..++.+.|.++ | +.+.++
T Consensus       291 ~~~~~~~~l~~~L~~~-g~~~~-~~~~~~~~~~~~~~~~-~~~~~---------------~~~~~~~l~~~~g-i~v~~g  351 (393)
T 3kgw_A          291 RHREATAHLHKHLQEM-GLKFF-VKDPEIRLPTITTVTV-PAGYN---------------WRDIVSYVLDHFS-IEISGG  351 (393)
T ss_dssp             HHHHHHHHHHHHHHHT-TCCBS-SSSGGGBCSSEEEEEC-CTTBC---------------HHHHHHHHHHHHC-EECBCC
T ss_pred             HHHHHHHHHHHHHHHc-CCeec-cCChhhcCCeEEEEeC-CCCCC---------------HHHHHHHHHHhCC-EEEeCC
Confidence            9999999999999999 88875 322   22333 3433 22221               23788889887 8 555443


Q ss_pred             ecCCcccccEEEEEecCCCCCCHHHHHHHHHHHHHHHHHhH
Q psy14299        397 PLQHRNLHNFFRLVTTCHPASSRQDMDYAIDQIELRGAEVD  437 (448)
Q Consensus       397 ~~~g~~~~~~lRis~~~~~~~t~edid~l~~al~~~~~~~~  437 (448)
                      ...  ..++++|++++ ++.++++|+++++++|+++.+++.
T Consensus       352 ~~~--~~~~~iRi~~~-~~~~~~~~i~~~~~~l~~~l~~~~  389 (393)
T 3kgw_A          352 LGP--TEERVLRIGLL-GYNATTENVDRVAEALREALQHCP  389 (393)
T ss_dssp             CGG--GTTTEEEEECC-GGGCCHHHHHHHHHHHHHHHHHSC
T ss_pred             ccc--CCCCEEEEEec-ccCCCHHHHHHHHHHHHHHHHhhh
Confidence            211  12379999984 344699999999999999987654

>1elu_A L-cysteine/L-cystine C-S lyase; FES cluster biosynthesis, pyridoxal 5'-phosphate, thiocystei aminoacrylate, enzyme-product complex; HET: PDA; 1.55A {Synechocystis SP} SCOP: c.67.1.3 PDB: 1elq_A* 1n2t_A* 1n31_A*

Probab=99.93  E-value=5.9e-24  Score=213.51  Aligned_cols=297  Identities=13%  Similarity=0.094  Sum_probs=206.3

Q ss_pred             cEEEeCcHHHHHHHHHHHHHHhcCCcccccCCCCCCCeEEEecCCCchHHHHH----HHHhCCCCCcEEEEecC--CCCC
Q psy14299          4 KPFLLPGGSISNMYSICLARYRLDPDTKRKGLSHLPPLCMFTSEDSHYSMLKA----AHWLGIGMDNVIRVKTN--ERGQ   77 (448)
Q Consensus         4 ~g~~t~ggT~an~~al~~a~~~~~~~~~~~G~~~~~~~~Vl~~~~~H~s~~~~----~~~~g~~~~~v~~v~~~--~~g~   77 (448)
                      .+++|+|||+++..++.+++.             .+++.|+++..+|.+...+    ++..|.   +++.++.+  +++.
T Consensus        78 ~v~~~~g~t~a~~~~~~~~~~-------------~~gd~vl~~~~~~~~~~~~~~~~~~~~g~---~~~~v~~~~~~~~~  141 (390)
T 1elu_A           78 TITITDNVTTGCDIVLWGLDW-------------HQGDEILLTDCEHPGIIAIVQAIAARFGI---TYRFFPVAATLNQG  141 (390)
T ss_dssp             GEEEESSHHHHHHHHHHHSCC-------------CTTCEEEEETTCCHHHHHHHHHHHHHHCC---EEEEECCGGGSSSS
T ss_pred             HEEEeCChHHHHHHHHhCCCC-------------CCCCEEEEecCcccHHHHHHHHHHHHhCc---EEEEEcCCCCCCcc
Confidence            579999999999888876531             1567789999999997654    566788   78889886  5788


Q ss_pred             cCHHHHHHHHHHhhhcCCCcEEEEEeccCCccccccCHHHHHHHHH----HcCCEEEEecccccccccccchhhhhcCCC
Q psy14299         78 MICSFLEQTIQTSLAEKKIPLFVNATAGTTVLGAFDPLDEIATVCE----KYDLWMHVDACWGGSLIFSEKYSFVLKGIN  153 (448)
Q Consensus        78 id~e~Le~~l~~~~~~~~~~~lVv~~~~~t~tG~~~~l~~I~~ia~----~~g~~l~VD~A~~~~~~~~~~~~~~~~~~~  153 (448)
                      +|+++|++++++      ++++|++++++|++|.+.|+++|.++|+    +||+++++|++|+.+..+.+.     .. .
T Consensus       142 ~d~~~l~~~i~~------~~~~v~~~~~~nptG~~~~~~~i~~l~~~~~~~~~~~li~Dea~~~g~~~~~~-----~~-~  209 (390)
T 1elu_A          142 DAAAVLANHLGP------KTRLVILSHLLWNTGQVLPLAEIMAVCRRHQGNYPVRVLVDGAQSAGSLPLDF-----SR-L  209 (390)
T ss_dssp             CHHHHHHTTCCT------TEEEEEEESBCTTTCCBCCHHHHHHHHHHCCSSSCCEEEEECTTTBTTBCCCT-----TT-S
T ss_pred             chHHHHHHhcCC------CceEEEEeccccCCceecCHHHHHHHHhhhhhhcCcEEEEEcccccCCcCCCh-----hh-c
Confidence            999999998854      5889999999999999999999999999    999999999999977553321     11 1


Q ss_pred             CccEEEECCccccCCCCceEEEEEeccchhhhhccCCcccccccCcccccccCCCCCcc-cCCCCchhHHHHHHHHHhCh
Q psy14299        154 RANSVSWNPHKMLGAPLQCSILLIKEKGLLHQANATAATYLFQQDKFYDVSFDTGDKSV-QCGRKVDAFKLWLMWKARGN  232 (448)
Q Consensus       154 ~aD~~~~s~hK~l~~P~g~G~l~vr~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~g~  232 (448)
                      ..|+++.|+|||+++|.|+|+++++++ +.........++.....     .++...+.+ +..++               
T Consensus       210 ~~d~~~~s~~K~~~~~~g~G~~~~~~~-~~~~~~~~~~g~~~~~~-----~~~~~~~~~~~~~~~---------------  268 (390)
T 1elu_A          210 EVDYYAFTGHKWFAGPAGVGGLYIHGD-CLGEINPTYVGWRSITY-----GAKGEPTGWAEGGKR---------------  268 (390)
T ss_dssp             CCSEEEEESSSTTCCCTTCEEEEECTT-TGGGCCCCSCCTTTEEE-----CTTSCEEEECSGGGG---------------
T ss_pred             CCCEEEccccccccCCCceEEEEECHH-hHhhcCCccccCCcccc-----cccCcccccccchHh---------------
Confidence            479999999999999999999998754 33332211111100000     000000000 00000               


Q ss_pred             HHHHHHHHHhhhhccCCCccchhhhhhhhhhhhhhhhhhhhhhhccccccccccCCCCCccccccchhhHHHHHHHHHhc
Q psy14299        233 LGFRHFVDNAVDCSRGSMTFSTLLCFDLQGLLHQANATAATYLFQQDKFYDVSFDTGDKSVQCGRKVDAFKLWLMWKARG  312 (448)
Q Consensus       233 ~g~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  312 (448)
                                                                                ......+...+.++..+++.+.
T Consensus       269 ----------------------------------------------------------~~~~~~~~~~~~a~~~al~~l~  290 (390)
T 1elu_A          269 ----------------------------------------------------------FEVATSAYPQYAGLLAALQLHQ  290 (390)
T ss_dssp             ----------------------------------------------------------GCCSCCCHHHHHHHHHHHHHHH
T ss_pred             ----------------------------------------------------------hCCCCCCHHHHHHHHHHHHHHH
Confidence                                                                      0000111233344445566555


Q ss_pred             Ccc-HHHHHHHHHHHHHHHHHHhhcCCCeEEecc--CCceeeEEEEeeccCCCccccchhhhhhhhhhhHHHHHHHHhCC
Q psy14299        313 NLG-FRHFVDNAVDCSRYFLSQISQRPGFRLVIP--EFQCTNICFWFIPVSLRDKVEDETWWSTLSKVAPRIKEKLVLGG  389 (448)
Q Consensus       313 ~~G-~~~~~~~~~~l~~~~~~~L~~~pg~~l~~~--~~~~~~v~f~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~L~~~g  389 (448)
                      .+| ++++.++..++++++.+.|+++||++++ .  ++..+++.|.+ +.+.+               ..++.+.|.++|
T Consensus       291 ~~~~~~~~~~~~~~~~~~l~~~L~~~~g~~~~-~~~~~~~~~~~~~~-~~~~~---------------~~~~~~~l~~~g  353 (390)
T 1elu_A          291 RQGTAEERYQAICQRSEFLWRGLNQLPHVHCL-ATSAPQAGLVSFTV-DSPLG---------------HRAIVQKLEEQR  353 (390)
T ss_dssp             HHCCHHHHHHHHHHHHHHHHHHHHHSTTEEES-CSSCCSSSEEEEEE-CSSSC---------------HHHHHHHHHHTT
T ss_pred             HcCCHHHHHHHHHHHHHHHHHHHHhcCCcEEe-cCccccccEEEEEc-CCCCC---------------HHHHHHHHHHCC
Confidence            555 8889999999999999999999999986 4  23566777754 22221               236888898888


Q ss_pred             cEEEEeeecCCcccccEEEEEecCCCCCCHHHHHHHHHHHHHH
Q psy14299        390 TLMIGYQPLQHRNLHNFFRLVTTCHPASSRQDMDYAIDQIELR  432 (448)
Q Consensus       390 ~~~~~~~~~~g~~~~~~lRis~~~~~~~t~edid~l~~al~~~  432 (448)
                       +.+.+..  +.   +++|+++  +.+++++|+++++++|+++
T Consensus       354 -i~v~~~~--~~---~~iRis~--~~~~~~~~i~~~~~~l~~~  388 (390)
T 1elu_A          354 -IYLRTIA--DP---DCIRACC--HYITDEEEINHLLARLADF  388 (390)
T ss_dssp             -EECEEET--TT---TEEEEEC--CTTCCHHHHHHHHHHHTTC
T ss_pred             -EEEEecC--CC---CeEEEec--ccCCCHHHHHHHHHHHHhh
Confidence             5554443  22   6899999  6889999999999999754

>3ke3_A Putative serine-pyruvate aminotransferase; structural genomi center for structural genomics, JCSG, protein structure INI PSI-2; HET: LLP; 2.20A {Psychrobacter arcticus 273-4}

Probab=99.93  E-value=2.3e-24  Score=217.47  Aligned_cols=304  Identities=9%  Similarity=0.042  Sum_probs=203.0

Q ss_pred             cEEEeCcHHHHHHHHHHHHHHhcCCcccccCCCCCCCeEEEecCCCchHH--HHHHHHhCCCCCcEEEEecCCC------
Q psy14299          4 KPFLLPGGSISNMYSICLARYRLDPDTKRKGLSHLPPLCMFTSEDSHYSM--LKAAHWLGIGMDNVIRVKTNER------   75 (448)
Q Consensus         4 ~g~~t~ggT~an~~al~~a~~~~~~~~~~~G~~~~~~~~Vl~~~~~H~s~--~~~~~~~g~~~~~v~~v~~~~~------   75 (448)
                      ..+||+|||+++..++.. ..              +++.|++....|++.  ...++..|++. +++.++.+.+      
T Consensus        53 ~v~~~~sgt~a~~~~~~~-~~--------------~gd~vi~~~~~~~~~~~~~~~~~~g~~~-~~~~~~~~~~g~~~~~  116 (379)
T 3ke3_A           53 AVIIPGSGTYGMEAVARQ-LT--------------IDEDCLIIRNGWFSYRWTQILEKGKFAK-SSTVLTAERTEDTEAP  116 (379)
T ss_dssp             EEEEESCHHHHHHHHHHH-HC--------------TTCEEEEEECSHHHHHHHHHHHHHCCSS-EEEEEECEESSCCSSC
T ss_pred             EEEEcCChhHHHHHHHHh-CC--------------CCCeEEEEeCCchhHHHHHHHHHhCCCC-ceEEEecccccccccc
Confidence            468899999998887643 22              456677777888764  34555566432 4667776432      


Q ss_pred             ---CCcCHHHHHHHHHHhhhcCCCcEEEEEeccCCccccccC---HHHHHHHHHHcCCEEEEecccccccccccchhhhh
Q psy14299         76 ---GQMICSFLEQTIQTSLAEKKIPLFVNATAGTTVLGAFDP---LDEIATVCEKYDLWMHVDACWGGSLIFSEKYSFVL  149 (448)
Q Consensus        76 ---g~id~e~Le~~l~~~~~~~~~~~lVv~~~~~t~tG~~~~---l~~I~~ia~~~g~~l~VD~A~~~~~~~~~~~~~~~  149 (448)
                         +.+|++++++++++.     ++++|++++++|++|.+.|   +++|+++||+||+++|+|++++ +..+.+....  
T Consensus       117 ~~~~~~d~~~l~~~i~~~-----~~~~v~~~~~~~~~G~~~~~~~l~~i~~~~~~~~~~li~D~~~~-g~~~~~~~~~--  188 (379)
T 3ke3_A          117 KPFAPVDIETAVAKIKED-----KSAIVYAPHVETSSGIILSEEYIKALSEAVHSVGGLLVIDCIAS-GCVWLDMKEL--  188 (379)
T ss_dssp             CCEECCCHHHHHHHHHHH-----TCSEEEEESEETTTTEECCHHHHHHHHHHHHHTTCEEEEECTTC-TTCCCCHHHH--
T ss_pred             CCCCCCCHHHHHHHHhhc-----CCcEEEEEeecCCCceeCCHHHHHHHHHHHHHcCCEEEEEeccc-CCcccccccc--
Confidence               368999999999642     4778999999999999999   9999999999999999999998 6544332111  


Q ss_pred             cCCCCccEEEECCccccCCCCceEEEEEeccchhhhhcc-CCcccccccCcccccccCCCCCcccCCCCchhHHHHHHHH
Q psy14299        150 KGINRANSVSWNPHKMLGAPLQCSILLIKEKGLLHQANA-TAATYLFQQDKFYDVSFDTGDKSVQCGRKVDAFKLWLMWK  228 (448)
Q Consensus       150 ~~~~~aD~~~~s~hK~l~~P~g~G~l~vr~~~~~~~~~~-~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  228 (448)
                          .+|++++++||++++|.|+|+++++++ ....... ...++...                                
T Consensus       189 ----~~d~~~~s~~K~l~~~~g~g~~~~~~~-~~~~l~~~~~~~~~~~--------------------------------  231 (379)
T 3ke3_A          189 ----GIDVLISAPQKGWSSTPCAGLVMLSAA-AIKKVESTESNCFSLD--------------------------------  231 (379)
T ss_dssp             ----TCSEEEECTTTTTCSCCCEEEEEECHH-HHHHHHTCCCSCSTTC--------------------------------
T ss_pred             ----CCCEEEecchhhcCCCCceEEEEECHH-HHHhhhcCCCCceeec--------------------------------
Confidence                479999999999999999999999765 3333321 11111110                                


Q ss_pred             HhChHHHHHHHHHhhhhccCCCccchhhhhhhhhhhhhhhhhhhhhhhccccccccccCCCCCcc-ccccchhhHHHHHH
Q psy14299        229 ARGNLGFRHFVDNAVDCSRGSMTFSTLLCFDLQGLLHQANATAATYLFQQDKFYDVSFDTGDKSV-QCGRKVDAFKLWLM  307 (448)
Q Consensus       229 ~~g~~g~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~  307 (448)
                         ...++...+....                                            +.+.+ ...+...+.++..+
T Consensus       232 ---~~~~~~~~~~~~~--------------------------------------------g~~~~~~t~~~~~~~a~~aa  264 (379)
T 3ke3_A          232 ---LKQWLTIMRAYEN--------------------------------------------GGHAYHATMPTDSLRQFRDA  264 (379)
T ss_dssp             ---HHHHHHHHHHHHT--------------------------------------------TSCCCSSCCCHHHHHHHHHH
T ss_pred             ---HHHHHHHHHhhhc--------------------------------------------cCCCCCCCCCHHHHHHHHHH
Confidence               0011111100000                                            00001 12334556667788


Q ss_pred             HHHhcCccHHHHHHHHHHHHHHHHHHhhcCCCeEEeccCC--ceeeEEEEeeccCCCccccchhhhhhhhhhhHHHHHHH
Q psy14299        308 WKARGNLGFRHFVDNAVDCSRYFLSQISQRPGFRLVIPEF--QCTNICFWFIPVSLRDKVEDETWWSTLSKVAPRIKEKL  385 (448)
Q Consensus       308 ~~~~~~~G~~~~~~~~~~l~~~~~~~L~~~pg~~l~~~~~--~~~~v~f~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~L  385 (448)
                      ++.+..+|++++.++..++++++++.|+++ |++++ .++  ..+.+.... +++..                ..+.+.|
T Consensus       265 l~~~~~~g~~~~~~~~~~l~~~l~~~l~~~-g~~~~-~~~~~~~~~i~~~~-~~~~~----------------~~~~~~L  325 (379)
T 3ke3_A          265 ILEAKEIGFDILRDAQWELGNRVRKVLTDK-GIESV-AAEGFEAPGVVVSY-TERDD----------------MHKGSAF  325 (379)
T ss_dssp             HHHHHHHCHHHHHHHHHHHHHHHHHHHHHT-TCCBS-BCTTCBCSSEEEEE-CSCHH----------------HHSSHHH
T ss_pred             HHHHHHhcHHHHHHHHHHHHHHHHHHHHHc-CCEec-CCccccCceEEEEc-cCCcc----------------hHHHHHH
Confidence            888888899999999999999999999998 88886 433  244443322 11100                0124667


Q ss_pred             HhCCcEEEEeeecCC---cccccEEEEEecCCCCCCHHHHHHHHHHHHHHHHHhH
Q psy14299        386 VLGGTLMIGYQPLQH---RNLHNFFRLVTTCHPASSRQDMDYAIDQIELRGAEVD  437 (448)
Q Consensus       386 ~~~g~~~~~~~~~~g---~~~~~~lRis~~~~~~~t~edid~l~~al~~~~~~~~  437 (448)
                      .++|+. +.++....   ...++++|+|+  +.++|++||++++++|+++.+++.
T Consensus       326 ~~~Gi~-v~~g~~~~~~~~~~~~~lRis~--~~~~t~~di~~~~~~l~~~l~~~~  377 (379)
T 3ke3_A          326 AEAGLQ-IAAGVPLKVGEPDNFKTFRLGL--FGLDKLTDIDGTVERFEKALDEVL  377 (379)
T ss_dssp             HHTTCC-CEECCCCSSCCCTTCCEEEEEC--CSHHHHTCHHHHHHHHHHHHHHHH
T ss_pred             HHCCeE-EeCCccccccccCcCCEEEEeC--CcCCCHHHHHHHHHHHHHHHHHhc
Confidence            788844 44432110   00137999999  578999999999999999987764

>1eg5_A Aminotransferase; PLP-dependent enzymes, iron-sulfur-cluster synthesis, C-S BE transferase; HET: PLP; 2.00A {Thermotoga maritima} SCOP: c.67.1.3 PDB: 1ecx_A*

Probab=99.93  E-value=1.6e-23  Score=209.65  Aligned_cols=290  Identities=14%  Similarity=0.171  Sum_probs=198.4

Q ss_pred             cEEEeCcHHHHHHHHHHHHHHhcCCcccccCCCCCCCeEEEecCCCchHHHHHH---HHhCCCCCcEEEEecCCCCCcCH
Q psy14299          4 KPFLLPGGSISNMYSICLARYRLDPDTKRKGLSHLPPLCMFTSEDSHYSMLKAA---HWLGIGMDNVIRVKTNERGQMIC   80 (448)
Q Consensus         4 ~g~~t~ggT~an~~al~~a~~~~~~~~~~~G~~~~~~~~Vl~~~~~H~s~~~~~---~~~g~~~~~v~~v~~~~~g~id~   80 (448)
                      .+++|+|||+++..++.+++....          .+++.|+++..+|+++...+   +..|.   +++.+|.++++.+|+
T Consensus        63 ~v~~~~g~t~a~~~~~~~~~~~~~----------~~gd~vl~~~~~~~~~~~~~~~~~~~g~---~~~~v~~~~~~~~d~  129 (384)
T 1eg5_A           63 EIFFTSCATESINWILKTVAETFE----------KRKRTIITTPIEHKAVLETMKYLSMKGF---KVKYVPVDSRGVVKL  129 (384)
T ss_dssp             GEEEESCHHHHHHHHHHHHHHHTT----------TTCCEEEECTTSCHHHHHHHHHHHHTTC---EEEECCBCTTSCBCH
T ss_pred             eEEEECCHHHHHHHHHHhhhhhcc----------CCCCEEEECCCCchHHHHHHHHHHhcCC---EEEEEccCCCCccCH
Confidence            589999999999999888773100          15678999999999987776   55677   788999988899999


Q ss_pred             HHHHHHHHHhhhcCCCcEEEEEeccCCccccccCHHHHHHHHHHcC--CEEEEecccccccccccchhhhhcCCCCccEE
Q psy14299         81 SFLEQTIQTSLAEKKIPLFVNATAGTTVLGAFDPLDEIATVCEKYD--LWMHVDACWGGSLIFSEKYSFVLKGINRANSV  158 (448)
Q Consensus        81 e~Le~~l~~~~~~~~~~~lVv~~~~~t~tG~~~~l~~I~~ia~~~g--~~l~VD~A~~~~~~~~~~~~~~~~~~~~aD~~  158 (448)
                      ++|++++++      ++++|++++++|++|.+.|+++|.++|++||  +++|+|++|+.+..+.+     +... .+|++
T Consensus       130 ~~l~~~i~~------~~~~v~~~~~~nptG~~~~~~~i~~l~~~~~~~~~li~Dea~~~~~~~~~-----~~~~-~~di~  197 (384)
T 1eg5_A          130 EELEKLVDE------DTFLVSIMAANNEVGTIQPVEDVTRIVKKKNKETLVHVDAVQTIGKIPFS-----LEKL-EVDYA  197 (384)
T ss_dssp             HHHHHHCCT------TEEEEEEESBCTTTCBBCCHHHHHHHHHHHCTTCEEEEECTTTTTTSCCC-----CTTT-CCSEE
T ss_pred             HHHHHHhCC------CCeEEEEECCCCCcccccCHHHHHHHHHhcCCceEEEEEhhhhcCCcccC-----chhc-CCCEE
Confidence            999999854      4889999999999999999999999999999  99999999986543322     1222 47999


Q ss_pred             EECCccccCCCCceEEEEEeccchhhhhccCCcccccccCcccccccCCCCCcccCCCCchhHHHHHHHHHhChHHHHHH
Q psy14299        159 SWNPHKMLGAPLQCSILLIKEKGLLHQANATAATYLFQQDKFYDVSFDTGDKSVQCGRKVDAFKLWLMWKARGNLGFRHF  238 (448)
Q Consensus       159 ~~s~hK~l~~P~g~G~l~vr~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~g~~~~  238 (448)
                      ++|+||++ +|.|+|+++++++..+..       .+.....    .   ... ...+..                     
T Consensus       198 ~~s~sK~~-g~~G~G~~~~~~~~~~~~-------~~~~~~~----~---~~~-~~~~~~---------------------  240 (384)
T 1eg5_A          198 SFSAHKFH-GPKGVGITYIRKGVPIRP-------LIHGGGQ----E---RGL-RSGTQN---------------------  240 (384)
T ss_dssp             EEEGGGGT-SCTTCEEEEECTTSCCCC-------SBCSSCT----T---TTT-BCSCCC---------------------
T ss_pred             EecHHHhc-CCCceEEEEEcCCCcccc-------ccccCcc----c---ccc-cCCCCC---------------------
Confidence            99999985 566799998866420111       1100000    0   000 000000                     


Q ss_pred             HHHhhhhccCCCccchhhhhhhhhhhhhhhhhhhhhhhccccccccccCCCCCccccccchhhHHHHHHHHHhcCccHHH
Q psy14299        239 VDNAVDCSRGSMTFSTLLCFDLQGLLHQANATAATYLFQQDKFYDVSFDTGDKSVQCGRKVDAFKLWLMWKARGNLGFRH  318 (448)
Q Consensus       239 i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~  318 (448)
                                                                                 .+.+..+..+++.. .+++++
T Consensus       241 -----------------------------------------------------------~~~~~a~~~al~~~-~~~~~~  260 (384)
T 1eg5_A          241 -----------------------------------------------------------VPGIVGAARAMEIA-VEELSE  260 (384)
T ss_dssp             -----------------------------------------------------------HHHHHHHHHHHHHH-HHTHHH
T ss_pred             -----------------------------------------------------------hHHHHHHHHHHHHH-HHhHHH
Confidence                                                                       11111122233321 135677


Q ss_pred             HHHHHHHHHHHHHHHhhcCCCeEEeccCCc---eeeEEEEeeccCCCccccchhhhhhhhhhhHHHHHHHHhCCcEEEEe
Q psy14299        319 FVDNAVDCSRYFLSQISQRPGFRLVIPEFQ---CTNICFWFIPVSLRDKVEDETWWSTLSKVAPRIKEKLVLGGTLMIGY  395 (448)
Q Consensus       319 ~~~~~~~l~~~~~~~L~~~pg~~l~~~~~~---~~~v~f~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~L~~~g~~~~~~  395 (448)
                      +.++..++++++.+.|++ +|++++ .++.   ...+.|.+.  +.+               ..++.+.|.++| +.+.+
T Consensus       261 ~~~~~~~~~~~l~~~L~~-~g~~~~-~~~~~~~~~~~~~~~~--~~~---------------~~~~~~~l~~~g-i~v~~  320 (384)
T 1eg5_A          261 AAKHMEKLRSKLVSGLMN-LGAHII-TPLEISLPNTLSVSFP--NIR---------------GSTLQNLLSGYG-IYVST  320 (384)
T ss_dssp             HHHHHHHHHHHHHHHHHT-TTCEEC-SCTTSBCTTEEEEECT--TCC---------------HHHHHHHHHHTT-EECBC
T ss_pred             HHHHHHHHHHHHHHHhCC-CCeEEe-CCcccCCCCEEEEEeC--CCC---------------HHHHHHHHhhCC-eEEec
Confidence            888899999999999999 699986 4321   234555432  111               236788888888 54444


Q ss_pred             eecC--------------Cc---ccccEEEEEecCCCCCCHHHHHHHHHHHHHHHHHhH
Q psy14299        396 QPLQ--------------HR---NLHNFFRLVTTCHPASSRQDMDYAIDQIELRGAEVD  437 (448)
Q Consensus       396 ~~~~--------------g~---~~~~~lRis~~~~~~~t~edid~l~~al~~~~~~~~  437 (448)
                      +...              |.   ...+++|+++  +.+++++|+++++++|+++.+++.
T Consensus       321 g~~~~~~~~~~~~~~~~~g~~~~~~~~~iRi~~--~~~~~~~~i~~~~~~l~~~~~~~~  377 (384)
T 1eg5_A          321 SSACTSKDERLRHVLDAMGVDRRIAQGAIRISL--CKYNTEEEVDYFLKKIEEILSFLD  377 (384)
T ss_dssp             ------------CHHHHTTCCHHHHHHEEEEEC--CTTCCHHHHHHHHHHHHHHHHHC-
T ss_pred             cccccCCCCcchHHHHHcCCChhhcCCeEEEEC--CCCCCHHHHHHHHHHHHHHHHHHH
Confidence            2211              10   0137999999  678999999999999999987654

>1vjo_A Alanine--glyoxylate aminotransferase; 17130350, ALR1004, STR genomics, JCSG, PSI, protein structure initiative, joint CE structural genomics; HET: PLP; 1.70A {Nostoc SP} SCOP: c.67.1.3

Probab=99.93  E-value=4.6e-24  Score=215.14  Aligned_cols=296  Identities=13%  Similarity=0.125  Sum_probs=210.9

Q ss_pred             cEEEeCcHHHHHHHHHHHHHHhcCCcccccCCCCCCCeEEEecCCCchH--HHHHHHHhCCCCCcEEEEecCCCCCcCHH
Q psy14299          4 KPFLLPGGSISNMYSICLARYRLDPDTKRKGLSHLPPLCMFTSEDSHYS--MLKAAHWLGIGMDNVIRVKTNERGQMICS   81 (448)
Q Consensus         4 ~g~~t~ggT~an~~al~~a~~~~~~~~~~~G~~~~~~~~Vl~~~~~H~s--~~~~~~~~g~~~~~v~~v~~~~~g~id~e   81 (448)
                      .+++|+|||+++..++.++..              +++.|+++...|++  +...++..|.   +++.+|.++++.+|++
T Consensus        87 ~v~~t~g~t~al~~~~~~~~~--------------~gd~Vl~~~~~~~~~~~~~~~~~~g~---~~~~v~~~~~~~~d~~  149 (393)
T 1vjo_A           87 TIAVSGTGTAAMEATIANAVE--------------PGDVVLIGVAGYFGNRLVDMAGRYGA---DVRTISKPWGEVFSLE  149 (393)
T ss_dssp             EEEESSCHHHHHHHHHHHHCC--------------TTCEEEEEESSHHHHHHHHHHHHTTC---EEEEEECCTTCCCCHH
T ss_pred             EEEEeCchHHHHHHHHHhccC--------------CCCEEEEEcCChhHHHHHHHHHHcCC---ceEEEecCCCCCCCHH
Confidence            489999999999998877643              56678888899998  8888888888   7899999888899999


Q ss_pred             HHHHHHHHhhhcCCCcEEEEEeccCCccccccCHHHHHHHHHHcCCEEEEecccccccccccchhhhhcCCCCccEEEEC
Q psy14299         82 FLEQTIQTSLAEKKIPLFVNATAGTTVLGAFDPLDEIATVCEKYDLWMHVDACWGGSLIFSEKYSFVLKGINRANSVSWN  161 (448)
Q Consensus        82 ~Le~~l~~~~~~~~~~~lVv~~~~~t~tG~~~~l~~I~~ia~~~g~~l~VD~A~~~~~~~~~~~~~~~~~~~~aD~~~~s  161 (448)
                      +|++++++.     ++++|++++++|++|.+.|+++|.++|++||+++++|++|+.+..+.+     +... .+|+++.+
T Consensus       150 ~l~~~l~~~-----~~~~v~~~~~~nptG~~~~l~~i~~l~~~~~~~li~Dea~~~g~~~~~-----~~~~-~~di~~~s  218 (393)
T 1vjo_A          150 ELRTALETH-----RPAILALVHAETSTGARQPLEGVGELCREFGTLLLVDTVTSLGGVPIF-----LDAW-GVDLAYSC  218 (393)
T ss_dssp             HHHHHHHHH-----CCSEEEEESEETTTTEECCCTTHHHHHHHHTCEEEEECTTTTTTSCCC-----TTTT-TCSEEECC
T ss_pred             HHHHHHhhC-----CceEEEEeccCCCcceeccHHHHHHHHHHcCCEEEEECCccccCcCCc-----cccc-CccEEEEc
Confidence            999999752     367999999999999999999999999999999999999996654322     1122 47999999


Q ss_pred             CccccCCCCceEEEEEeccchhhhhccCC---cccccccCcccccccCCCCCcccCCCCchhHHHHHHHHHhChHHHHHH
Q psy14299        162 PHKMLGAPLQCSILLIKEKGLLHQANATA---ATYLFQQDKFYDVSFDTGDKSVQCGRKVDAFKLWLMWKARGNLGFRHF  238 (448)
Q Consensus       162 ~hK~l~~P~g~G~l~vr~~~~~~~~~~~~---~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~g~~~~  238 (448)
                      +||++++|.++|+++++++ .........   .++...                        .. |       ..++.. 
T Consensus       219 ~sK~l~~~~~~G~l~~~~~-~~~~~~~~~~~~~~~~~~------------------------~~-~-------~~~~~~-  264 (393)
T 1vjo_A          219 SQKGLGCSPGASPFTMSSR-AIEKLQRRRTKVANWYLD------------------------MN-L-------LGKYWG-  264 (393)
T ss_dssp             SSSTTCSCSSCEEEEECHH-HHHHHHTCSSCCSCSTTC------------------------HH-H-------HHHHHS-
T ss_pred             CcccccCCCceEEEEECHH-HHHHHhccCCCCCceecC------------------------cH-h-------hhhhhc-
Confidence            9999999999999998664 333321100   011100                        00 0       000000 


Q ss_pred             HHHhhhhccCCCccchhhhhhhhhhhhhhhhhhhhhhhccccccccccCCCCCccc-cccchhhHHHHHHHHHhcCccHH
Q psy14299        239 VDNAVDCSRGSMTFSTLLCFDLQGLLHQANATAATYLFQQDKFYDVSFDTGDKSVQ-CGRKVDAFKLWLMWKARGNLGFR  317 (448)
Q Consensus       239 i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~G~~  317 (448)
                                                                        ..+... +.+.+.+.++..+++....+|++
T Consensus       265 --------------------------------------------------~~~~~~g~~~~~~~~a~~~al~~~~~~~~~  294 (393)
T 1vjo_A          265 --------------------------------------------------SERVYHHTAPINLYYALREALRLIAQEGLA  294 (393)
T ss_dssp             --------------------------------------------------TTCCCCSCCCHHHHHHHHHHHHHHHHHCHH
T ss_pred             --------------------------------------------------cCCCCCCCCCHHHHHHHHHHHHHHHHccHH
Confidence                                                              000011 23345556666777776667899


Q ss_pred             HHHHHHHHHHHHHHHHhhcCCCeEEeccCCc---eeeEEEEeeccCCCccccchhhhhhhhhhhHHHHHHHHhC-CcEEE
Q psy14299        318 HFVDNAVDCSRYFLSQISQRPGFRLVIPEFQ---CTNICFWFIPVSLRDKVEDETWWSTLSKVAPRIKEKLVLG-GTLMI  393 (448)
Q Consensus       318 ~~~~~~~~l~~~~~~~L~~~pg~~l~~~~~~---~~~v~f~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~L~~~-g~~~~  393 (448)
                      ++.++..++++++.+.|+++ |++++ .+..   .+++.|.+ |.+.+               ..++.+.|.++ | +.+
T Consensus       295 ~~~~~~~~~~~~l~~~L~~~-g~~~~-~~~~~~~~~~~~~~~-~~~~~---------------~~~~~~~l~~~~g-i~v  355 (393)
T 1vjo_A          295 NCWQRHQKNVEYLWERLEDI-GLSLH-VEKEYRLPTLTTVCI-PDGVD---------------GKAVARRLLNEHN-IEV  355 (393)
T ss_dssp             HHHHHHHHHHHHHHHHHHHT-TCCBS-SCGGGBCSSEEEEEC-CTTCC---------------HHHHHHHHHHHHC-EEC
T ss_pred             HHHHHHHHHHHHHHHHHHHc-CCccc-CCccccCCcEEEEEc-CCCCC---------------HHHHHHHHHhhCC-EEE
Confidence            99999999999999999998 88876 4322   23445543 22221               23788889887 8 444


Q ss_pred             EeeecCCcccccEEEEEecCCCCCCHHHHHHHHHHHHHHH
Q psy14299        394 GYQPLQHRNLHNFFRLVTTCHPASSRQDMDYAIDQIELRG  433 (448)
Q Consensus       394 ~~~~~~g~~~~~~lRis~~~~~~~t~edid~l~~al~~~~  433 (448)
                      .++....  .++++|+++. .+.++++++++++++|+++.
T Consensus       356 ~~g~~~~--~~~~iRis~~-~~~~~~~~i~~~~~~l~~~l  392 (393)
T 1vjo_A          356 GGGLGEL--AGKVWRVGLM-GFNSRKESVDQLIPALEQVL  392 (393)
T ss_dssp             EECCGGG--TTTEEEEECC-GGGCSHHHHHHHHHHHHHHH
T ss_pred             ecCcccc--CCCEEEEeCC-ccCChHHHHHHHHHHHHHHh
Confidence            4433211  1379999963 34567888999999998764

>1wyu_B Glycine dehydrogenase subunit 2 (P-protein); alpha(2)beta(2) tetramer, riken structural genomics/proteomi initiative, RSGI; HET: PLP; 2.10A {Thermus thermophilus} SCOP: c.67.1.7 PDB: 1wyt_B* 1wyv_B*

Probab=99.92  E-value=1.1e-23  Score=219.03  Aligned_cols=310  Identities=14%  Similarity=0.152  Sum_probs=205.6

Q ss_pred             ccEEEeCcHHHHHHHHHHHHHHhcCCcccccCCCCCCCeEEEecCCCchHHHHHHHHhCCCCCcEEEEecCCCCCcCHHH
Q psy14299          3 LKPFLLPGGSISNMYSICLARYRLDPDTKRKGLSHLPPLCMFTSEDSHYSMLKAAHWLGIGMDNVIRVKTNERGQMICSF   82 (448)
Q Consensus         3 ~~g~~t~ggT~an~~al~~a~~~~~~~~~~~G~~~~~~~~Vl~~~~~H~s~~~~~~~~g~~~~~v~~v~~~~~g~id~e~   82 (448)
                      ...++|+|||+++..++.+++....    +.|-. ..+..|+++..+|.++..+++..|+   +++.+|.++++.+|+++
T Consensus       124 ~~~~~~~ggt~a~~~al~~~~~~~~----~~Gd~-~~r~~Vlv~~~~h~~~~~~~~~~G~---~vv~v~~~~~~~~d~~~  195 (474)
T 1wyu_B          124 AITLEPAAGAHGELTGILIIRAYHE----DRGEG-RTRRVVLVPDSAHGSNPATASMAGY---QVREIPSGPEGEVDLEA  195 (474)
T ss_dssp             EEECCCSSHHHHHHHHHHHHHHHHH----HTTCT-TTCCEEEEETTSCTHHHHHHHHTTC---EEEEECBCTTSSBCHHH
T ss_pred             ceeecChHHHHHHHHHHHHHHHHHH----hcCCc-cCCCEEEEeCCcChhhHHHHHHCCC---EEEEecCCCCCCcCHHH
Confidence            3456889999999998877764210    01210 0233788899999999999999998   89999998899999999


Q ss_pred             HHHHHHHhhhcCCCcEEEEEeccCCccccc-cCHHHHHHHHHHcCCEEEEecccccccc-cccchhhhhcCCCCccEEEE
Q psy14299         83 LEQTIQTSLAEKKIPLFVNATAGTTVLGAF-DPLDEIATVCEKYDLWMHVDACWGGSLI-FSEKYSFVLKGINRANSVSW  160 (448)
Q Consensus        83 Le~~l~~~~~~~~~~~lVv~~~~~t~tG~~-~~l~~I~~ia~~~g~~l~VD~A~~~~~~-~~~~~~~~~~~~~~aD~~~~  160 (448)
                      |++++++      ++++|+++++ |++|.+ +|+++|+++|++||+++|+|++|+.+.. ..+.  ..   . .+|++++
T Consensus       196 L~~~i~~------~t~~v~~~~p-n~~G~~~~~l~~i~~l~~~~g~~li~Dea~~~~~~g~~~~--~~---~-g~di~~~  262 (474)
T 1wyu_B          196 LKRELGP------HVAALMLTNP-NTLGLFERRILEISRLCKEAGVQLYYDGANLNAIMGWARP--GD---M-GFDVVHL  262 (474)
T ss_dssp             HHHHCST------TEEEEEECSS-CTTSCCCTTHHHHHHHHHHHTCEEEEEGGGGGGTTTTCCH--HH---H-TCSEEEC
T ss_pred             HHHhhCC------CceEEEEECC-CCCcccCCCHHHHHHHHHHcCCEEEEeCchhhhhccCCCc--cc---C-CCcEEEE
Confidence            9999954      4788888887 469998 7999999999999999999999976653 1111  11   1 3799999


Q ss_pred             CCccccCCCC-----ceEEEEEeccchhhhhccCCcccccccCcccccccCCCCCcccCCCCchhHHHHHHHHHhChHHH
Q psy14299        161 NPHKMLGAPL-----QCSILLIKEKGLLHQANATAATYLFQQDKFYDVSFDTGDKSVQCGRKVDAFKLWLMWKARGNLGF  235 (448)
Q Consensus       161 s~hK~l~~P~-----g~G~l~vr~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~g~  235 (448)
                      |+||++++|.     ++|+++++++ +.....   ..++......+  ..++..  .+..+++.                
T Consensus       263 s~~K~~~~p~g~gG~~~G~~~~~~~-l~~~l~---~~~~~~~g~~~--~~~~~~--~~~~~~~~----------------  318 (474)
T 1wyu_B          263 NLHKTFTVPHGGGGPGSGPVGVKAH-LAPYLP---VPLVERGEEGF--YLDFDR--PKSIGRVR----------------  318 (474)
T ss_dssp             CTTTTTCCCCTTSCCCCCCEEECGG-GGGGCC---SCEEEECSSCE--EEECCC--TTCCCCSS----------------
T ss_pred             eCccccccCCCCCCCCeEEEEEcHH-HHHhCC---CCeeeccCCee--EecccC--cccCcccc----------------
Confidence            9999999995     6899998764 333221   01111000000  000000  00000100                


Q ss_pred             HHHHHHhhhhccCCCccchhhhhhhhhhhhhhhhhhhhhhhccccccccccCCCCCccccccchhhHHHHHHHHHhcCcc
Q psy14299        236 RHFVDNAVDCSRGSMTFSTLLCFDLQGLLHQANATAATYLFQQDKFYDVSFDTGDKSVQCGRKVDAFKLWLMWKARGNLG  315 (448)
Q Consensus       236 ~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G  315 (448)
                                                                               -.|.+...+.+.+..++..+.+|
T Consensus       319 ---------------------------------------------------------~~~~~~~~~~aa~~~l~~~g~~~  341 (474)
T 1wyu_B          319 ---------------------------------------------------------SFYGNFLALVRAWAYIRTLGLEG  341 (474)
T ss_dssp             ---------------------------------------------------------STTSCHHHHHHHHHHHHHHHHHH
T ss_pred             ---------------------------------------------------------cCcCcHHHHHHHHHHHHHHHHHH
Confidence                                                                     00122223344455566667788


Q ss_pred             HHHHHHHHHHHHHHHHHHhhcCCCeEEeccCCceeeEEEEeeccCCCccccchhhhhhhhhhhHHHHHHHHhCCcEEEEe
Q psy14299        316 FRHFVDNAVDCSRYFLSQISQRPGFRLVIPEFQCTNICFWFIPVSLRDKVEDETWWSTLSKVAPRIKEKLVLGGTLMIGY  395 (448)
Q Consensus       316 ~~~~~~~~~~l~~~~~~~L~~~pg~~l~~~~~~~~~v~f~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~L~~~g~~~~~~  395 (448)
                      ++++.++..++++++.+.|+++ |+++....+....+.+.+ +.+..               ..++.+.|.++|+. + +
T Consensus       342 l~~~~~~~~~~~~~l~~~L~~~-g~~~~~~~~~~~~~~~~~-~~~~~---------------~~~l~~~L~~~Gi~-~-~  402 (474)
T 1wyu_B          342 LKKAAALAVLNARYLKELLKEK-GYRVPYDGPSMHEFVAQP-PEGFR---------------ALDLAKGLLELGFH-P-P  402 (474)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHT-TCBCSSCSSCCSCEEEBC-STTCC---------------HHHHHHHHHHTTCC-C-C
T ss_pred             HHHHHHHHHHHHHHHHHHHhhc-CcEecCCCCcceEEEEEc-CCCCC---------------HHHHHHHHHHCCcc-c-c
Confidence            8888999999999999999998 888741222222233322 21111               23788899999854 3 2


Q ss_pred             eecCCcccccEEEEEecCCCCCCHHHHHHHHHHHHHHHHH
Q psy14299        396 QPLQHRNLHNFFRLVTTCHPASSRQDMDYAIDQIELRGAE  435 (448)
Q Consensus       396 ~~~~g~~~~~~lRis~~~~~~~t~edid~l~~al~~~~~~  435 (448)
                      ....+...++++|+++  +.++|++|+++++++|+++.++
T Consensus       403 ~~~~~~~~~~~lRis~--~~~~t~e~id~~~~~L~~~~~~  440 (474)
T 1wyu_B          403 TVYFPLIVKEALMVEP--TETEAKETLEAFAEAMGALLKK  440 (474)
T ss_dssp             EESCSTTSTTCEEECC--CTTSCHHHHHHHHHHHHHHHTS
T ss_pred             ccccccccCCEEEEEe--ecCCCHHHHHHHHHHHHHHHHh
Confidence            2221111137899999  5788999999999999998765

>2ch1_A 3-hydroxykynurenine transaminase; PLP-enzyme, kynurenine pathway, transferase; HET: LLP; 2.4A {Anopheles gambiae} SCOP: c.67.1.3 PDB: 2ch2_A*

Probab=99.92  E-value=7.7e-24  Score=213.51  Aligned_cols=304  Identities=12%  Similarity=0.125  Sum_probs=210.1

Q ss_pred             cEEEeCcHHHHHHHHHHHHHHhcCCcccccCCCCCCCeEEEecCCCchHHH--HHHHHhCCCCCcEEEEecCCCCCcCHH
Q psy14299          4 KPFLLPGGSISNMYSICLARYRLDPDTKRKGLSHLPPLCMFTSEDSHYSML--KAAHWLGIGMDNVIRVKTNERGQMICS   81 (448)
Q Consensus         4 ~g~~t~ggT~an~~al~~a~~~~~~~~~~~G~~~~~~~~Vl~~~~~H~s~~--~~~~~~g~~~~~v~~v~~~~~g~id~e   81 (448)
                      .+++|+|||+++..++.++..              +++.|+++..+|.+..  ..++..|.   +++.++.++++.+|++
T Consensus        71 ~v~~~~g~t~al~~~~~~~~~--------------~gd~vl~~~~~~~~~~~~~~~~~~g~---~~~~v~~~~~~~~d~~  133 (396)
T 2ch1_A           71 TMCVSGSAHAGMEAMLSNLLE--------------EGDRVLIAVNGIWAERAVEMSERYGA---DVRTIEGPPDRPFSLE  133 (396)
T ss_dssp             EEEESSCHHHHHHHHHHHHCC--------------TTCEEEEEESSHHHHHHHHHHHHTTC---EEEEEECCTTSCCCHH
T ss_pred             EEEECCcHHHHHHHHHHHhcC--------------CCCeEEEEcCCcccHHHHHHHHHcCC---ceEEecCCCCCCCCHH
Confidence            478999999999988877633              5667888889999874  46777888   7899999888899999


Q ss_pred             HHHHHHHHhhhcCCCcEEEEEeccCCccccccCHHHHHHHHHHcCCEEEEecccccccccccchhhhhcCCCCccEEEEC
Q psy14299         82 FLEQTIQTSLAEKKIPLFVNATAGTTVLGAFDPLDEIATVCEKYDLWMHVDACWGGSLIFSEKYSFVLKGINRANSVSWN  161 (448)
Q Consensus        82 ~Le~~l~~~~~~~~~~~lVv~~~~~t~tG~~~~l~~I~~ia~~~g~~l~VD~A~~~~~~~~~~~~~~~~~~~~aD~~~~s  161 (448)
                      +|++++++.     ++++|++++++|++|.+.|+++|.++|++||+++++|++|+.+..+.+     +... .+|+++.+
T Consensus       134 ~l~~~l~~~-----~~~~v~~~~~~nptG~~~~~~~i~~l~~~~~~~li~Dea~~~g~~~~~-----~~~~-~~d~~~~s  202 (396)
T 2ch1_A          134 TLARAIELH-----QPKCLFLTHGDSSSGLLQPLEGVGQICHQHDCLLIVDAVASLCGVPFY-----MDKW-EIDAVYTG  202 (396)
T ss_dssp             HHHHHHHHH-----CCSEEEEESEETTTTEECCCTTHHHHHHHTTCEEEEECTTTBTTBCCC-----TTTT-TCCEEECC
T ss_pred             HHHHHHHhC-----CCCEEEEECCCCCCceecCHHHHHHHHHHcCCEEEEEccccccCCccc-----hhhc-CcCEEEEc
Confidence            999999752     377999999999999999999999999999999999999997654322     1112 36999999


Q ss_pred             CccccCCCCceEEEEEeccchhhhhccC---CcccccccCcccccccCCCCCcccCCCCchhHHHHHHHHHhChHHHHHH
Q psy14299        162 PHKMLGAPLQCSILLIKEKGLLHQANAT---AATYLFQQDKFYDVSFDTGDKSVQCGRKVDAFKLWLMWKARGNLGFRHF  238 (448)
Q Consensus       162 ~hK~l~~P~g~G~l~vr~~~~~~~~~~~---~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~g~~~~  238 (448)
                      +||++++|.|+|+++++++ .+......   ..+++..                                   ..+++..
T Consensus       203 ~~K~~~~~~g~g~~~~~~~-~~~~~~~~~~~~~~~~~~-----------------------------------~~~~~~~  246 (396)
T 2ch1_A          203 AQKVLGAPPGITPISISPK-ALDVIRNRRTKSKVFYWD-----------------------------------LLLLGNY  246 (396)
T ss_dssp             CC-CCCCCSSCEEEEECHH-HHHHHHTCSSCCSCGGGC-----------------------------------HHHHHHH
T ss_pred             CCccccCCCCeEEEEECHH-HHHhhhhccCcccceEec-----------------------------------hHHHHHh
Confidence            9999999999999888663 33332111   0111110                                   0011110


Q ss_pred             HHHhhhhccCCCccchhhhhhhhhhhhhhhhhhhhhhhccccccccccCCCCCccccccchhhHHHHHHHHHhcCccHHH
Q psy14299        239 VDNAVDCSRGSMTFSTLLCFDLQGLLHQANATAATYLFQQDKFYDVSFDTGDKSVQCGRKVDAFKLWLMWKARGNLGFRH  318 (448)
Q Consensus       239 i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~  318 (448)
                      .                                           .. .........+.+...+.++..+++....+++++
T Consensus       247 ~-------------------------------------------~~-~~~~~~~~~~~~~~~~~a~~~al~~~~~~~~~~  282 (396)
T 2ch1_A          247 W-------------------------------------------GC-YDEPKRYHHTVASNLIFALREALAQIAEEGLEN  282 (396)
T ss_dssp             T-------------------------------------------TC-SSSCCCCCCCCCHHHHHHHHHHHHHHHHHCHHH
T ss_pred             h-------------------------------------------hh-hcccCCCCCCCcHHHHHHHHHHHHHHHHhhHHH
Confidence            0                                           00 000000111223444555666777766678999


Q ss_pred             HHHHHHHHHHHHHHHhhcCCCeEEeccCCc---e-eeEEEEeeccCCCccccchhhhhhhhhhhHHHHHHHHhC-CcEEE
Q psy14299        319 FVDNAVDCSRYFLSQISQRPGFRLVIPEFQ---C-TNICFWFIPVSLRDKVEDETWWSTLSKVAPRIKEKLVLG-GTLMI  393 (448)
Q Consensus       319 ~~~~~~~l~~~~~~~L~~~pg~~l~~~~~~---~-~~v~f~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~L~~~-g~~~~  393 (448)
                      +.++..++++++.+.|+++ |++++ .+..   . .++.|.+ |.+.+               ..++.+.|.++ |+ .+
T Consensus       283 ~~~~~~~~~~~l~~~L~~~-g~~~~-~~~~~~~~~~~~~~~~-~~~~~---------------~~~~~~~L~~~~gi-~v  343 (396)
T 2ch1_A          283 QIKRRIECAQILYEGLGKM-GLDIF-VKDPRHRLPTVTGIMI-PKGVD---------------WWKVSQYAMNNFSL-EV  343 (396)
T ss_dssp             HHHHHHHHHHHHHHHHHHH-TCCBS-SCSGGGBCTTEEEEEC-CTTCC---------------HHHHHHHHHHHHCB-CC
T ss_pred             HHHHHHHHHHHHHHHHHHC-CCeec-cCCccccCCceEEEEc-CCCCC---------------HHHHHHHHHHhCCE-EE
Confidence            9999999999999999998 88876 3322   1 2455543 22221               23688888875 84 34


Q ss_pred             EeeecCCcccccEEEEEecCCCCCCHHHHHHHHHHHHHHHHHhH
Q psy14299        394 GYQPLQHRNLHNFFRLVTTCHPASSRQDMDYAIDQIELRGAEVD  437 (448)
Q Consensus       394 ~~~~~~g~~~~~~lRis~~~~~~~t~edid~l~~al~~~~~~~~  437 (448)
                      .++...  ..++++|++++ ++.++++|+++++++|+++.+++.
T Consensus       344 ~~g~~~--~~~~~iRi~~~-~~~~~~e~i~~~~~~l~~~l~~~~  384 (396)
T 2ch1_A          344 QGGLGP--TFGKAWRVGIM-GECSTVQKIQFYLYGFKESLKATH  384 (396)
T ss_dssp             BCCCGG--GTTTEEEEECC-GGGCSHHHHHHHHHHHHHHHHHHC
T ss_pred             ecCccc--cCCCEEEEECC-CCcCCHHHHHHHHHHHHHHHHHhC
Confidence            332211  12379999994 245689999999999999987654

>2bkw_A Alanine-glyoxylate aminotransferase 1; analine-glyoxylate aminotransferase, pyridoxal-5-phosphate, SAD, glycolate pathway; HET: LLP; 2.57A {Saccharomyces cerevisiae} SCOP: c.67.1.3

Probab=99.92  E-value=5.3e-24  Score=213.47  Aligned_cols=305  Identities=13%  Similarity=0.074  Sum_probs=205.6

Q ss_pred             cEEEeCcHHHHHHHHHHHHHHhcCCcccccCCCCCCCeEEEecC--CCchHHHHHHHHhCCCCCcEEEEec-CCCCCcCH
Q psy14299          4 KPFLLPGGSISNMYSICLARYRLDPDTKRKGLSHLPPLCMFTSE--DSHYSMLKAAHWLGIGMDNVIRVKT-NERGQMIC   80 (448)
Q Consensus         4 ~g~~t~ggT~an~~al~~a~~~~~~~~~~~G~~~~~~~~Vl~~~--~~H~s~~~~~~~~g~~~~~v~~v~~-~~~g~id~   80 (448)
                      .+++|+|||+++..++.++....           .+++.|++.+  ..|.++...++..|.   +++.++. ++++.+|+
T Consensus        61 ~v~~~~g~t~al~~~~~~~~~~~-----------~~gd~vlv~~~~~~~~~~~~~~~~~g~---~~~~v~~~~~~~~~d~  126 (385)
T 2bkw_A           61 PFVLAGSGTLGWDIFASNFILSK-----------APNKNVLVVSTGTFSDRFADCLRSYGA---QVDVVRPLKIGESVPL  126 (385)
T ss_dssp             EEEEESCTTHHHHHHHHHHSCTT-----------CSCCEEEEECSSHHHHHHHHHHHHTTC---EEEEECCSSTTSCCCH
T ss_pred             eEEEcCchHHHHHHHHHHHhccC-----------CCCCeEEEEcCCcchHHHHHHHHHcCC---ceEEEecCCCCCCCCH
Confidence            57899999999999887764210           1445555543  344555577777888   7899998 88889999


Q ss_pred             HHHHHHHHHhhhcCCCcEEEEEeccCCccccccCHHHHHHHHHHc--CCEEEEecccccccccccchhhhhcCCCCccEE
Q psy14299         81 SFLEQTIQTSLAEKKIPLFVNATAGTTVLGAFDPLDEIATVCEKY--DLWMHVDACWGGSLIFSEKYSFVLKGINRANSV  158 (448)
Q Consensus        81 e~Le~~l~~~~~~~~~~~lVv~~~~~t~tG~~~~l~~I~~ia~~~--g~~l~VD~A~~~~~~~~~~~~~~~~~~~~aD~~  158 (448)
                      ++|++++++     .++++|++++++|++|.+.|+++|.++|++|  |+++|+|++|+.+..+.+     +... .+|++
T Consensus       127 ~~l~~~l~~-----~~~~~v~~~~~~nptG~~~~l~~i~~~~~~~~~~~~li~D~a~~~~~~~~~-----~~~~-~~d~~  195 (385)
T 2bkw_A          127 ELITEKLSQ-----NSYGAVTVTHVDTSTAVLSDLKAISQAIKQTSPETFFVVDAVCSIGCEEFE-----FDEW-GVDFA  195 (385)
T ss_dssp             HHHHHHHHH-----SCCSEEEEESEETTTTEECCHHHHHHHHHHHCTTSEEEEECTTTTTTSCCC-----TTTT-TCSEE
T ss_pred             HHHHHHHhc-----CCCCEEEEEccCCCcCeEcCHHHHHHHHHhhCCCCEEEEECccccCCcccc-----cccc-CceEE
Confidence            999999975     2478999999999999999999999999999  999999999987765332     1122 37999


Q ss_pred             EECCccccCCCCceEEEEEeccchhh-hhcc----CCcccccccCcccccccCCCCCcccCCCCchhHHHHHHHHHhChH
Q psy14299        159 SWNPHKMLGAPLQCSILLIKEKGLLH-QANA----TAATYLFQQDKFYDVSFDTGDKSVQCGRKVDAFKLWLMWKARGNL  233 (448)
Q Consensus       159 ~~s~hK~l~~P~g~G~l~vr~~~~~~-~~~~----~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~  233 (448)
                      ++++||++++|.|+|+++++++ .+. ....    ....|...             .                      .
T Consensus       196 ~~s~~K~~~~~~G~G~~~~~~~-~~~~~l~~~~~~~~~~~~~~-------------~----------------------~  239 (385)
T 2bkw_A          196 LTASQKAIGAPAGLSISLCSSR-FMDYALNDSKNGHVHGYFSS-------------L----------------------R  239 (385)
T ss_dssp             EEESSSTTCCCSCEEEEEECHH-HHHHHTCHHHHCCCSCSTTC-------------H----------------------H
T ss_pred             EecCccccccCCcceEEEEcHH-HHHHHHhhccCCCCCceeec-------------H----------------------H
Confidence            9999999999999999988664 333 2110    00111100             0                      0


Q ss_pred             HHHHHHHHhhhhccCCCccchhhhhhhhhhhhhhhhhhhhhhhccccccccccCCCCCccccccchhhHHHHHHHHHhcC
Q psy14299        234 GFRHFVDNAVDCSRGSMTFSTLLCFDLQGLLHQANATAATYLFQQDKFYDVSFDTGDKSVQCGRKVDAFKLWLMWKARGN  313 (448)
Q Consensus       234 g~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  313 (448)
                      .+...... ...                                          .........+...+.++..+++....
T Consensus       240 ~~~~~~~~-~~~------------------------------------------~~~~~~~~~~~~~~~a~~~al~~~~~  276 (385)
T 2bkw_A          240 RWTPIMEN-YEA------------------------------------------GKGAYFATPPVQLINSLDVALKEILE  276 (385)
T ss_dssp             HHHHHHHH-HHT------------------------------------------TCCCCSSCCCHHHHHHHHHHHHHHHH
T ss_pred             HHhhHHHh-hhc------------------------------------------cCCCCCCCCCHHHHHHHHHHHHHHHH
Confidence            00000000 000                                          00000011223445566677777777


Q ss_pred             ccHHHHHHHHHHHHHHHHHHh-hcCCCeEEeccCC-----ceeeEEEEeeccCCCccccchhhhhhhhhhhHHHHHHHHh
Q psy14299        314 LGFRHFVDNAVDCSRYFLSQI-SQRPGFRLVIPEF-----QCTNICFWFIPVSLRDKVEDETWWSTLSKVAPRIKEKLVL  387 (448)
Q Consensus       314 ~G~~~~~~~~~~l~~~~~~~L-~~~pg~~l~~~~~-----~~~~v~f~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~L~~  387 (448)
                      .|++++.++..++++++.+.| +++ |++++ .+.     ..+++.|.+.  +                 ..++.+.|.+
T Consensus       277 ~~~~~~~~~~~~~~~~l~~~L~~~~-g~~~~-~~~~~~~~~~~~~~~~~~--~-----------------~~~~~~~l~~  335 (385)
T 2bkw_A          277 EGLHKRWDLHREMSDWFKDSLVNGL-QLTSV-SRYPSNMSAHGLTAVYVA--D-----------------PPDVIAFLKS  335 (385)
T ss_dssp             HCHHHHHHHHHHHHHHHHHHHHTTT-CCEES-SCSSSTTBCSSCEEEECS--C-----------------HHHHHHHHHH
T ss_pred             ccHHHHHHHHHHHHHHHHHHHHHhc-Cceec-ccCcccccCCceEEEecC--C-----------------HHHHHHHHHH
Confidence            789999999999999999999 988 89886 321     3455555431  0                 1368888888


Q ss_pred             CCcEEEEeeecCCcccccEEEEE-ecCCC-CCCHHHHHHHHHHHHHHHHH
Q psy14299        388 GGTLMIGYQPLQHRNLHNFFRLV-TTCHP-ASSRQDMDYAIDQIELRGAE  435 (448)
Q Consensus       388 ~g~~~~~~~~~~g~~~~~~lRis-~~~~~-~~t~edid~l~~al~~~~~~  435 (448)
                      +| +.+.++.... ..++++|++ +..|. .+|++|+++++++|+++.++
T Consensus       336 ~g-i~v~~g~~~~-~~~~~iRis~~~~~~~~~~~e~i~~~~~~l~~~~~~  383 (385)
T 2bkw_A          336 HG-VVIAGGIHKD-IGPKYIRIGHMGVTACNKNLPYMKNCFDLIKLALQR  383 (385)
T ss_dssp             TT-EECBCCCCTT-TGGGEEEECCCGGGTSSTTCTHHHHHHHHHHHHTTC
T ss_pred             CC-eEEeCCCCcc-cCCCEEEEEccccccccCCHHHHHHHHHHHHHHHHh
Confidence            88 5554432211 123799999 42133 47999999999999987654

>3cai_A Possible aminotransferase; RV3778C; 1.80A {Mycobacterium tuberculosis}

Probab=99.92  E-value=1.6e-23  Score=212.12  Aligned_cols=289  Identities=12%  Similarity=0.078  Sum_probs=196.8

Q ss_pred             cEEEeCcHHHHHHHHHHHHHHhcCCcccccCCCCCCCeEEEecCCCchHHHHHHHH----hCCCCCcEEEEecC-CCCCc
Q psy14299          4 KPFLLPGGSISNMYSICLARYRLDPDTKRKGLSHLPPLCMFTSEDSHYSMLKAAHW----LGIGMDNVIRVKTN-ERGQM   78 (448)
Q Consensus         4 ~g~~t~ggT~an~~al~~a~~~~~~~~~~~G~~~~~~~~Vl~~~~~H~s~~~~~~~----~g~~~~~v~~v~~~-~~g~i   78 (448)
                      .++||+|||+++..++.+.....           .+++.|+++..+|.++...+..    .|.   +++.++.+ +++.+
T Consensus        88 ~v~~~~g~t~al~~~~~~l~~~~-----------~~gd~vi~~~~~~~~~~~~~~~~~~~~g~---~v~~v~~~~~~~~~  153 (406)
T 3cai_A           88 GVVLGADRAVLLSLLAEASSSRA-----------GLGYEVIVSRLDDEANIAPWLRAAHRYGA---KVKWAEVDIETGEL  153 (406)
T ss_dssp             GEEEESCHHHHHHHHHHHTGGGG-----------BTTCEEEEETTSCGGGTHHHHHHHHHHBC---EEEEECCCTTTCCC
T ss_pred             eEEEeCChHHHHHHHHHHHhhcc-----------CCCCEEEEcCCccHHHHHHHHHHHHhcCC---eEEEEecCcccCCc
Confidence            58999999999877765542111           1567789999999987666554    577   78899988 68899


Q ss_pred             CHHHHHHHHHHhhhcCCCcEEEEEeccCCccccccCHHHHHHHHHHcCCEEEEecccccccccccchhhhhcCCCCccEE
Q psy14299         79 ICSFLEQTIQTSLAEKKIPLFVNATAGTTVLGAFDPLDEIATVCEKYDLWMHVDACWGGSLIFSEKYSFVLKGINRANSV  158 (448)
Q Consensus        79 d~e~Le~~l~~~~~~~~~~~lVv~~~~~t~tG~~~~l~~I~~ia~~~g~~l~VD~A~~~~~~~~~~~~~~~~~~~~aD~~  158 (448)
                      |+++|++++++      ++++|++++++|++|.+.|+++|.++|+++|+++++|++|+.+..+.+...     . .+|++
T Consensus       154 d~~~l~~~l~~------~~~~v~~~~~~nptG~~~~l~~i~~l~~~~~~~li~D~a~~~g~~~~~~~~-----~-~~d~~  221 (406)
T 3cai_A          154 PTWQWESLISK------STRLVAVNSASGTLGGVTDLRAMTKLVHDVGALVVVDHSAAAPYRLLDIRE-----T-DADVV  221 (406)
T ss_dssp             CGGGHHHHCCT------TEEEEEEESBCTTTCBBCCCHHHHHHHHHTTCEEEEECTTTTTTCCCCHHH-----H-CCSEE
T ss_pred             CHHHHHHHhCC------CceEEEEeCCcCCccccCCHHHHHHHHHHcCCEEEEEcccccCCCCCCchh-----c-CCCEE
Confidence            99999999854      588999999999999999999999999999999999999997765433111     1 36999


Q ss_pred             EECCccccCCCCceE-EEEEeccchhhhhccCCcccccccCcccccccCCCCCcccCCCCchhHHHHHHHHHhChHHHHH
Q psy14299        159 SWNPHKMLGAPLQCS-ILLIKEKGLLHQANATAATYLFQQDKFYDVSFDTGDKSVQCGRKVDAFKLWLMWKARGNLGFRH  237 (448)
Q Consensus       159 ~~s~hK~l~~P~g~G-~l~vr~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~g~~~  237 (448)
                      +.|+||+++ |. +| ++++++ .+........ .+... .     .    ...+..+.                     
T Consensus       222 ~~s~~K~~g-~~-~G~~~~~~~-~~~~~l~~~~-~~~~~-~-----~----~~~~~~~t---------------------  266 (406)
T 3cai_A          222 TVNAHAWGG-PP-IGAMVFRDP-SVMNSFGSVS-TNPYA-T-----G----PARLEIGV---------------------  266 (406)
T ss_dssp             EEEGGGGTS-CS-CEEEEESCH-HHHHTSCCCC-SCTTC-C-----G----GGGGCCSC---------------------
T ss_pred             EeehhhhcC-CC-cCeEEEEeh-HHHhhcCCcc-cCCCC-C-----c----cccccCCC---------------------
Confidence            999999875 65 88 777755 3333221110 00000 0     0    00000000                     


Q ss_pred             HHHHhhhhccCCCccchhhhhhhhhhhhhhhhhhhhhhhccccccccccCCCCCccccccchhhHHHHHHHHHhcCc---
Q psy14299        238 FVDNAVDCSRGSMTFSTLLCFDLQGLLHQANATAATYLFQQDKFYDVSFDTGDKSVQCGRKVDAFKLWLMWKARGNL---  314 (448)
Q Consensus       238 ~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---  314 (448)
                                                                                .+.....++..++++....   
T Consensus       267 ----------------------------------------------------------~~~~~~~a~~~al~~~~~~g~~  288 (406)
T 3cai_A          267 ----------------------------------------------------------HQFGLLAGVVASIEYLAALDES  288 (406)
T ss_dssp             ----------------------------------------------------------CCHHHHHHHHHHHHHHHTSSTT
T ss_pred             ----------------------------------------------------------ccHHHHHHHHHHHHHHHHhccc
Confidence                                                                      0011122223344444443   


Q ss_pred             -----------cHHHHHHHHHHHHHHHHHHhhcCCCeEEeccCC--ceeeEEEEeeccCCCccccchhhhhhhhhhhHHH
Q psy14299        315 -----------GFRHFVDNAVDCSRYFLSQISQRPGFRLVIPEF--QCTNICFWFIPVSLRDKVEDETWWSTLSKVAPRI  381 (448)
Q Consensus       315 -----------G~~~~~~~~~~l~~~~~~~L~~~pg~~l~~~~~--~~~~v~f~~~~~~~~~~~~~~~~~~~~~~~~~~i  381 (448)
                                 +++++.++..++++++.+.|+++|+++++ .+.  ..+++.|.+.  +.+               ..++
T Consensus       289 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~-~~~~~~~~~~~~~~~--~~~---------------~~~~  350 (406)
T 3cai_A          289 ARGSRRERLAVSMQSADAYLNRVFDYLMVSLRSLPLVMLI-GRPEAQIPVVSFAVH--KVP---------------ADRV  350 (406)
T ss_dssp             CCSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCTTEEEC-CCCSSBCSEEEEEET--TBC---------------HHHH
T ss_pred             cccchhhhhhhhHHHHHHHHHHHHHHHHHHHhcCCCeEEc-CCccccCCEEEEEEC--CcC---------------HHHH
Confidence                       37889999999999999999999999986 432  3555666542  111               2368


Q ss_pred             HHHHHhCCcEEEEeee------cCCc-ccccEEEEEecCCCCCCHHHHHHHHHHHHHH
Q psy14299        382 KEKLVLGGTLMIGYQP------LQHR-NLHNFFRLVTTCHPASSRQDMDYAIDQIELR  432 (448)
Q Consensus       382 ~~~L~~~g~~~~~~~~------~~g~-~~~~~lRis~~~~~~~t~edid~l~~al~~~  432 (448)
                      .+.|.++| +.+.++.      ..|. ...+++|+++  +.+++++|+++++++|+++
T Consensus       351 ~~~L~~~g-i~v~~g~~~~~~~~~g~~~~~~~iRis~--~~~~t~e~i~~~~~~l~~~  405 (406)
T 3cai_A          351 VQRLADNG-ILAIANTGSRVLDVLGVNDVGGAVTVGL--AHYSTMAEVDQLVRALASL  405 (406)
T ss_dssp             HHHHHHTT-EECEECCSCHHHHHHTTTTTTCCEEEEC--CTTCCHHHHHHHHHHHHTC
T ss_pred             HHHHHHCC-cEEecCChHHHHHHcCCCCCCCeEEEEe--ecCCCHHHHHHHHHHHHHh
Confidence            88888888 4444432      0111 0126899999  6789999999999999753

>3hl2_A O-phosphoseryl-tRNA(SEC) selenium transferase; selenocysteine, sepsecs, protein-RNA complex, alternative splicing, cytoplasm, protein biosynthesis, pyridoxal phosphate, selenium; HET: PLR SEP; 2.81A {Homo sapiens}

Probab=99.92  E-value=7.6e-24  Score=214.24  Aligned_cols=204  Identities=12%  Similarity=0.144  Sum_probs=144.5

Q ss_pred             ccEEEeCcHHHHHHHHHHHHHHhcCCcccccCCCCCCCeEEEecCCCchHHHHHHHHhCCCCCcEEEEec---CCCCCcC
Q psy14299          3 LKPFLLPGGSISNMYSICLARYRLDPDTKRKGLSHLPPLCMFTSEDSHYSMLKAAHWLGIGMDNVIRVKT---NERGQMI   79 (448)
Q Consensus         3 ~~g~~t~ggT~an~~al~~a~~~~~~~~~~~G~~~~~~~~Vl~~~~~H~s~~~~~~~~g~~~~~v~~v~~---~~~g~id   79 (448)
                      .+.++++|+|-+++..+++++++..+          ..+.|++++.+|.|+.+++.++|+   ..+.+++   ++...+|
T Consensus       135 ~~~flVnGsTgg~lamilaa~r~~rp----------g~d~VIvpRn~HKSv~kAliL~Gl---~Pv~V~p~~d~~~~~id  201 (501)
T 3hl2_A          135 ANCFVVPMATGMSLTLCFLTLRHKRP----------KAKYIIWPRIDQKSCFKSMITAGF---EPVVIENVLEGDELRTD  201 (501)
T ss_dssp             CEEEEESSCHHHHHHHHHHHHHHHCT----------TCCEEEEECCCCHHHHHHHHHTTC---EEEEECEEEETTEEEEC
T ss_pred             CcEEEECcHHHHHHHHHHHHcCcccC----------CCCEEEEecchHHHHHHHHHHcCC---eEEEEeeeecccccCCC
Confidence            35788999996655555544443110          225688899999999999999999   5556655   3457899


Q ss_pred             HHHHHHHHHHhhhcCCCcEEEEEeccCCc-cccccCHHHHHHHHHHcCCEEEEecccccccccccchhhhhcCCCCccEE
Q psy14299         80 CSFLEQTIQTSLAEKKIPLFVNATAGTTV-LGAFDPLDEIATVCEKYDLWMHVDACWGGSLIFSEKYSFVLKGINRANSV  158 (448)
Q Consensus        80 ~e~Le~~l~~~~~~~~~~~lVv~~~~~t~-tG~~~~l~~I~~ia~~~g~~l~VD~A~~~~~~~~~~~~~~~~~~~~aD~~  158 (448)
                      +++|+++|++.   +....+++++.+++. .+..+||++|+++||+||+++|||.|||+...+..........++.+|++
T Consensus       202 ~e~le~aI~e~---ga~~i~~V~~Ttt~y~p~~~ddI~eIaeIch~~gIpllVDeAhGah~~~~~~lp~sA~~~GrAD~v  278 (501)
T 3hl2_A          202 LKAVEAKVQEL---GPDCILCIHSTTSCFAPRVPDRLEELAVICANYDIPHIVNNAYGVQSSKCMHLIQQGARVGRIDAF  278 (501)
T ss_dssp             HHHHHHHHHHH---CGGGEEEEEEECSCCTTBCCCCHHHHHHHHHHHTCCEEEECTTCTTCHHHHHHHHHHHHHSCCCEE
T ss_pred             HHHHHHHHHhc---CCCcEEEEEecCCCCCCcccccHHHHHHHHHHcCCeEEEeCcchhhhhhhhhhHHHHHhcCCCcEE
Confidence            99999999874   223445555555444 45779999999999999999999999999886554332221122248999


Q ss_pred             EECCccccCCCCceEEEEEeccchhhhhccCCcccccccCcccccccCCCCCcccCCCCchhHHHHHHHHHhChHHHHHH
Q psy14299        159 SWNPHKMLGAPLQCSILLIKEKGLLHQANATAATYLFQQDKFYDVSFDTGDKSVQCGRKVDAFKLWLMWKARGNLGFRHF  238 (448)
Q Consensus       159 ~~s~hK~l~~P~g~G~l~vr~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~g~~~~  238 (448)
                      +.|+||++..|.|.++++.++++++.....   .|...                  ...++++.+|+++..+|++||++.
T Consensus       279 VqS~HK~llvpIGG~ii~~~d~e~l~~~~~---~yPGr------------------~S~Spsldl~~tLL~lGr~Gy~~l  337 (501)
T 3hl2_A          279 VQSLDKNFMVPVGGAIIAGFNDSFIQEISK---MYPGR------------------ASASPSLDVLITLLSLGSNGYKKL  337 (501)
T ss_dssp             EEEHHHHHCCCSSCEEEEESCHHHHHHHHH---TSCSC------------------BCSHHHHHHHHHHHHHHHHHHHHH
T ss_pred             EecccccceeecCceEEEeCCHHHHHHHHH---hCCCC------------------CCCcHHHHHHHHHHHHHHHHHHHH
Confidence            999999999999999988888766655321   12110                  013456678888888888888775


Q ss_pred             HHHhh
Q psy14299        239 VDNAV  243 (448)
Q Consensus       239 i~~~~  243 (448)
                      +++..
T Consensus       338 l~e~~  342 (501)
T 3hl2_A          338 LKERK  342 (501)
T ss_dssp             HHHHH
T ss_pred             HHHHH
Confidence            55433

>2e7j_A SEP-tRNA:Cys-tRNA synthase; seven-stranded BETE-strand, lyase, structural genomics; HET: PLP; 2.40A {Archaeoglobus fulgidus} SCOP: c.67.1.9 PDB: 2e7i_A*

Probab=99.92  E-value=4e-24  Score=213.52  Aligned_cols=153  Identities=19%  Similarity=0.191  Sum_probs=130.0

Q ss_pred             cEEEeCcHHHHHHHHHHHHHHhcCCcccccCCCCCCCeEEEecCCCchHHHHHHHHhCCCCCcEEEEe--cCCCCCcCHH
Q psy14299          4 KPFLLPGGSISNMYSICLARYRLDPDTKRKGLSHLPPLCMFTSEDSHYSMLKAAHWLGIGMDNVIRVK--TNERGQMICS   81 (448)
Q Consensus         4 ~g~~t~ggT~an~~al~~a~~~~~~~~~~~G~~~~~~~~Vl~~~~~H~s~~~~~~~~g~~~~~v~~v~--~~~~g~id~e   81 (448)
                      .+++|+|||+++..++.++..              +++.|+++..+|+++..+++..|.   +++.++  .++++.+|++
T Consensus        71 ~v~~~~g~t~a~~~~~~~~~~--------------~gd~vl~~~~~~~~~~~~~~~~g~---~~~~v~~~~~~~~~~d~~  133 (371)
T 2e7j_A           71 VARVTNGAREAKFAVMHSLAK--------------KDAWVVMDENCHYSSYVAAERAGL---NIALVPKTDYPDYAITPE  133 (371)
T ss_dssp             EEEEESSHHHHHHHHHHHHCC--------------TTCEEEEETTCCHHHHHHHHHTTC---EEEEECCCCTTTCCCCHH
T ss_pred             EEEEeCChHHHHHHHHHHHhC--------------CCCEEEEccCcchHHHHHHHHcCC---eEEEeecccCCCCCcCHH
Confidence            578999999999999887633              567899999999999999999998   789999  8888999999


Q ss_pred             HHHHHHHHhhhcCCCcEEEEEeccCCccccccCHHHHHHHHHHcCCEEEEecccccccccccchhhhhcCCCCccEEEEC
Q psy14299         82 FLEQTIQTSLAEKKIPLFVNATAGTTVLGAFDPLDEIATVCEKYDLWMHVDACWGGSLIFSEKYSFVLKGINRANSVSWN  161 (448)
Q Consensus        82 ~Le~~l~~~~~~~~~~~lVv~~~~~t~tG~~~~l~~I~~ia~~~g~~l~VD~A~~~~~~~~~~~~~~~~~~~~aD~~~~s  161 (448)
                      +|++++++.... .++++|++++++|++|.+.|+++|.++|++||+++++|++|+.+..+.+...     . .+|+++.|
T Consensus       134 ~l~~~l~~~~~~-~~~~~v~~~~~~nptG~~~~~~~i~~~~~~~~~~li~D~a~~~~~~~~~~~~-----~-~~di~~~s  206 (371)
T 2e7j_A          134 NFAQTIEETKKR-GEVVLALITYPDGNYGNLPDVKKIAKVCSEYDVPLLVNGAYAIGRMPVSLKE-----I-GADFIVGS  206 (371)
T ss_dssp             HHHHHHHHHTTT-SCEEEEEEESSCTTTCCCCCHHHHHHHHHTTTCCEEEECTTTBTTBCCCHHH-----H-TCSEEEEE
T ss_pred             HHHHHHHhhccc-CCeEEEEEECCCCCCcccCCHHHHHHHHHHcCCeEEEECccccCCCCCChhh-----c-CCCEEEec
Confidence            999999753211 3688999999999999999999999999999999999999998765432111     1 36899999


Q ss_pred             CccccCCCCceEEEEEecc
Q psy14299        162 PHKMLGAPLQCSILLIKEK  180 (448)
Q Consensus       162 ~hK~l~~P~g~G~l~vr~~  180 (448)
                      +||++++|.++|+++++++
T Consensus       207 ~sK~~~~~~~~G~~~~~~~  225 (371)
T 2e7j_A          207 GHKSMAASGPIGVMGMKEE  225 (371)
T ss_dssp             HHHHSSCCSSCEEEEECTT
T ss_pred             CCcCCCCCCCcEEEEEech
Confidence            9999999999999998765

>3m5u_A Phosphoserine aminotransferase; alpha-beta half sandwich, csgid, amino-acid biosynthesis, cytoplasm, pyridoxal phosphate; HET: MES; 2.15A {Campylobacter jejuni} SCOP: c.67.1.0

Probab=99.92  E-value=3.6e-24  Score=214.97  Aligned_cols=280  Identities=14%  Similarity=0.032  Sum_probs=194.6

Q ss_pred             cEEE-eCcHHHHHHHHHHHHHHhcCCcccccCCCCCCCeEEEecCCCchHHHHHHHHhCCCCCcEEEEecCCCCC--cCH
Q psy14299          4 KPFL-LPGGSISNMYSICLARYRLDPDTKRKGLSHLPPLCMFTSEDSHYSMLKAAHWLGIGMDNVIRVKTNERGQ--MIC   80 (448)
Q Consensus         4 ~g~~-t~ggT~an~~al~~a~~~~~~~~~~~G~~~~~~~~Vl~~~~~H~s~~~~~~~~g~~~~~v~~v~~~~~g~--id~   80 (448)
                      ..+| |+|||+++.+++.... +        |   ....+|+.+..+|..+ +.++..|.   ++..++.++++.  +++
T Consensus        70 ~v~f~t~~~T~a~n~~~~~~~-~--------~---~~~~~i~~~~~~~~~~-~~a~~~G~---~v~~~~~~~~g~~~~~~  133 (361)
T 3m5u_A           70 EVLFLQGGASLQFAMIPMNLA-L--------N---GVCEYANTGVWTKKAI-KEAQILGV---NVKTVASSEESNFDHIP  133 (361)
T ss_dssp             EEEEESSHHHHHHHHHHHHHC-C--------S---SCEEEEECSHHHHHHH-HHHHHTTC---CEEEEEECTTTTSCSCC
T ss_pred             eEEEEcCcHHHHHHHHHHhcC-C--------C---CeEEEEeCCHHHHHHH-HHHHHcCC---ceEEEecccCcCCCcCC
Confidence            5788 9999999888776543 2        1   1123566677777544 44455677   799999988875  567


Q ss_pred             HHHHHHHHHhhhcCCCcEEEEEeccCCccccccCHHHHHHHHHHcCCEEEEecccccccccccchhhhhcCCCCccEEEE
Q psy14299         81 SFLEQTIQTSLAEKKIPLFVNATAGTTVLGAFDPLDEIATVCEKYDLWMHVDACWGGSLIFSEKYSFVLKGINRANSVSW  160 (448)
Q Consensus        81 e~Le~~l~~~~~~~~~~~lVv~~~~~t~tG~~~~l~~I~~ia~~~g~~l~VD~A~~~~~~~~~~~~~~~~~~~~aD~~~~  160 (448)
                      +. +  |++      ++++|.+++.+|.+|.+.|.     +++ +|+++|||++++++..+++..        ..|++++
T Consensus       134 ~~-~--l~~------~t~lv~~~~~e~~tG~~~~~-----i~~-~~~~~~vD~~q~~g~~~id~~--------~~d~~~~  190 (361)
T 3m5u_A          134 RV-E--FSD------NADYAYICSNNTIYGTQYQN-----YPK-TKTPLIVDASSDFFSRKVDFS--------NIALFYG  190 (361)
T ss_dssp             CC-C--CCT------TSSEEEEESEETTTTEECSS-----CCC-CSSCEEEECGGGTTSSCCCCT--------TEEEEEE
T ss_pred             hh-h--cCC------CCCEEEEeCCCCCcceeCCc-----ccc-cCCEEEEEcccccCCCCCCcc--------cCCEEEE
Confidence            66 3  543      57899999999999998662     344 499999999999999877642        3689999


Q ss_pred             CCccccCCCCceEEEEEeccchhhhhcc-CCcccccccCcccccccCCCCCcccCCCCchhHHHHHHHHHhChHHHHHHH
Q psy14299        161 NPHKMLGAPLQCSILLIKEKGLLHQANA-TAATYLFQQDKFYDVSFDTGDKSVQCGRKVDAFKLWLMWKARGNLGFRHFV  239 (448)
Q Consensus       161 s~hK~l~~P~g~G~l~vr~~~~~~~~~~-~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~g~~~~i  239 (448)
                      ++|||++ |.|+|+++++++. +....+ ..+.|+...                                       ...
T Consensus       191 s~~K~~g-p~G~g~l~~~~~~-~~~~~~~~~p~~~~~~---------------------------------------~~~  229 (361)
T 3m5u_A          191 GVQKNAG-ISGLSCIFIRKDM-LERSKNKQIPSMLNYL---------------------------------------THA  229 (361)
T ss_dssp             ETTTTSS-CTTCEEEEEEHHH-HHHHHTCCCCGGGCHH---------------------------------------HHH
T ss_pred             echhccC-CCccEEEEEcHHH-HhhhcCCCCCceeehH---------------------------------------HHh
Confidence            9999995 9999999998764 333222 112221100                                       000


Q ss_pred             HHhhhhccCCCccchhhhhhhhhhhhhhhhhhhhhhhccccccccccCCCCCccccccchhhHHHHHHHHHhcCc-cHHH
Q psy14299        240 DNAVDCSRGSMTFSTLLCFDLQGLLHQANATAATYLFQQDKFYDVSFDTGDKSVQCGRKVDAFKLWLMWKARGNL-GFRH  318 (448)
Q Consensus       240 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-G~~~  318 (448)
                      +.                                                +....-++...++++..+++++.++ |+++
T Consensus       230 ~~------------------------------------------------~~~~~Tp~v~~i~~l~~al~~l~~~gG~~~  261 (361)
T 3m5u_A          230 EN------------------------------------------------QSLFNTPPTFAIYMFNLEMDWLLNQGGLDK  261 (361)
T ss_dssp             HT------------------------------------------------TTCSSCCCHHHHHHHHHHHHHHHTTTCHHH
T ss_pred             hc------------------------------------------------CCCCCCccHHHHHHHHHHHHHHHHccCHHH
Confidence            00                                                0000123356677888899999999 8999


Q ss_pred             HHHHHHHHHHHHHHHhhcCCCe-EEeccCC--ce-eeEEEEeec-cCCCccccchhhhhhhhhhhHHHHHHHHhCCcEEE
Q psy14299        319 FVDNAVDCSRYFLSQISQRPGF-RLVIPEF--QC-TNICFWFIP-VSLRDKVEDETWWSTLSKVAPRIKEKLVLGGTLMI  393 (448)
Q Consensus       319 ~~~~~~~l~~~~~~~L~~~pg~-~l~~~~~--~~-~~v~f~~~~-~~~~~~~~~~~~~~~~~~~~~~i~~~L~~~g~~~~  393 (448)
                      +.++..++++++++.|++++|+ +++ .++  +. ++++|.+.. .++                ..++...|.++| +.+
T Consensus       262 i~~~~~~l~~~l~~~L~~~~g~~~~~-~~~~~rs~~ivsf~~~~~~~~----------------~~~~~~~L~~~g-I~~  323 (361)
T 3m5u_A          262 VHEKNSQKATMLYECIDLSNGFYKGH-ADKKDRSLMNVSFNIAKNKDL----------------EPLFVKEAEEAG-MIG  323 (361)
T ss_dssp             HHHHHHHHHHHHHHHHHTSTTSEEES-SCGGGBCSSEEEEEESSCTTH----------------HHHHHHHHHHTT-EEC
T ss_pred             HHHHHHHHHHHHHHHHHHCCCeeecc-CCHHHcCCeEEEEECCCchhh----------------hHHHHHHHHHCC-CEE
Confidence            9999999999999999999776 664 322  23 467776531 111                125777888888 443


Q ss_pred             EeeecCCcccccEEEEEecCCCCCCHHHHHHHHHHHHHHHHH
Q psy14299        394 GYQPLQHRNLHNFFRLVTTCHPASSRQDMDYAIDQIELRGAE  435 (448)
Q Consensus       394 ~~~~~~g~~~~~~lRis~~~~~~~t~edid~l~~al~~~~~~  435 (448)
                      ..+ ....   +.+|+|+  +.++|++|||+|+++|+++.++
T Consensus       324 ~~g-~~~~---g~iRiS~--~~~~t~edId~l~~al~~~~~~  359 (361)
T 3m5u_A          324 LKG-HRIL---GGIRASI--YNALNLDQVKTLCEFMKEFQGK  359 (361)
T ss_dssp             CBC-CTTT---CSEEEEC--CTTSCHHHHHHHHHHHHHHHHH
T ss_pred             ecC-CCcc---CeEEEEc--cCCCCHHHHHHHHHHHHHHHHh
Confidence            322 1122   5699999  5799999999999999998865

>3vax_A Putative uncharacterized protein DNDA; desulfurase, transferase; HET: PLP; 2.40A {Streptomyces lividans}

Probab=99.92  E-value=3e-24  Score=216.84  Aligned_cols=151  Identities=20%  Similarity=0.234  Sum_probs=125.1

Q ss_pred             cEEEeCcHHHHHHHHHHHHHHhcCCcccccCCCCCCCe-EEEecCCCchHHHHHHHHh---CCCCCcEEEEecCCCCCcC
Q psy14299          4 KPFLLPGGSISNMYSICLARYRLDPDTKRKGLSHLPPL-CMFTSEDSHYSMLKAAHWL---GIGMDNVIRVKTNERGQMI   79 (448)
Q Consensus         4 ~g~~t~ggT~an~~al~~a~~~~~~~~~~~G~~~~~~~-~Vl~~~~~H~s~~~~~~~~---g~~~~~v~~v~~~~~g~id   79 (448)
                      .+++|+|||+++.+++.+++....          .+++ .|+++..+|+++...+..+   |.   +++.+|.++++.+|
T Consensus        82 ~v~~~~g~t~al~~~~~~l~~~~~----------~~gd~~Vl~~~~~~~~~~~~~~~~~~~g~---~~~~v~~~~~~~~d  148 (400)
T 3vax_A           82 ELIFTSGATESNNIALLGLAPYGE----------RTGRRHIITSAIEHKAVLEPLEHLAGRGF---EVDFLTPGPSGRIS  148 (400)
T ss_dssp             GEEEESCHHHHHHHHHHTTHHHHH----------HHTCCEEEEETTSCHHHHHHHHHHHTTTC---EEEEECCCTTCCCC
T ss_pred             cEEEeCCHHHHHHHHHHHHHHhhc----------cCCCCEEEECccccHhHHHHHHHHHhcCC---eEEEEccCCCCCcC
Confidence            589999999999998887651100          0456 7899999999998887765   55   79999999899999


Q ss_pred             HHHHHHHHHHhhhcCCCcEEEEEeccCCccccccCHHHHHHHHHHcCCEEEEecccccccccccchhhhhcCCCCccEEE
Q psy14299         80 CSFLEQTIQTSLAEKKIPLFVNATAGTTVLGAFDPLDEIATVCEKYDLWMHVDACWGGSLIFSEKYSFVLKGINRANSVS  159 (448)
Q Consensus        80 ~e~Le~~l~~~~~~~~~~~lVv~~~~~t~tG~~~~l~~I~~ia~~~g~~l~VD~A~~~~~~~~~~~~~~~~~~~~aD~~~  159 (448)
                      +++|++++++      ++++|++++++|++|.+.|+++|.++|++||+++++|++|+.+....+     +...  +|+++
T Consensus       149 ~~~l~~~i~~------~~~~v~~~~~~nptG~~~~l~~i~~la~~~~~~li~D~a~~~~~~~~~-----~~~~--~d~~~  215 (400)
T 3vax_A          149 VEGVMERLRP------DTLLVSLMHVNNETGVIQPVAELAQQLRATPTYLHVDAAQGYGKVPGD-----LTTP--IDMIS  215 (400)
T ss_dssp             HHHHHTTCCT------TEEEEECCSBCTTTCBBCCHHHHHHHHTTSSCEEEEECTTTTTTSGGG-----GGSC--CSEEE
T ss_pred             HHHHHHhcCC------CceEEEEECCCCCceeeCcHHHHHHHHHhcCCEEEEEhhhhcCCCCcC-----hhhc--CcEEE
Confidence            9999999864      588999999999999999999999999999999999999997765432     2222  69999


Q ss_pred             ECCccccCCCCceEEEE-Eeccc
Q psy14299        160 WNPHKMLGAPLQCSILL-IKEKG  181 (448)
Q Consensus       160 ~s~hK~l~~P~g~G~l~-vr~~~  181 (448)
                      .++|| +++|.|+|+++ ++++.
T Consensus       216 ~s~~K-~~g~~g~g~~~~~~~~~  237 (400)
T 3vax_A          216 ISGHK-IGAPKGVGALVTRRREE  237 (400)
T ss_dssp             EETGG-GTSCSSCEEEEECBCSS
T ss_pred             EeHHH-hCCCCceEEEEEecchh
Confidence            99999 55688999999 87744

>3qm2_A Phosphoserine aminotransferase; structural genomics, center for structural genomics of infec diseases, csgid; 2.25A {Salmonella enterica subsp} PDB: 1bjn_A* 1bjo_A* 3qbo_A*

Probab=99.92  E-value=2.4e-24  Score=218.07  Aligned_cols=283  Identities=12%  Similarity=0.015  Sum_probs=191.4

Q ss_pred             cEEE-eCcHHHHHHHHHHHHHHhcCCcccccCCCCCCCeEEEecCCCchHHHHHHHHhCCCCCcEEEEecC--CCCC-cC
Q psy14299          4 KPFL-LPGGSISNMYSICLARYRLDPDTKRKGLSHLPPLCMFTSEDSHYSMLKAAHWLGIGMDNVIRVKTN--ERGQ-MI   79 (448)
Q Consensus         4 ~g~~-t~ggT~an~~al~~a~~~~~~~~~~~G~~~~~~~~Vl~~~~~H~s~~~~~~~~g~~~~~v~~v~~~--~~g~-id   79 (448)
                      ..+| |+|||+++.+++.....              +++.+++....|++. .+........ .+..++.+  ++|. ++
T Consensus        92 evif~t~~~T~a~n~ai~~l~~--------------~gd~v~~~~~~~~~~-~~~~~a~~~G-~v~~v~~~~~~~G~~~~  155 (386)
T 3qm2_A           92 KVLFCHGGGRGQFAGVPLNLLG--------------DKTTADYVDAGYWAA-SAIKEAKKYC-APQIIDAKITVDGKRAV  155 (386)
T ss_dssp             EEEEEESCTTHHHHHHHHHHCT--------------TCCEEEEEESSHHHH-HHHHHHTTTS-EEEEEECEEEETTEEEE
T ss_pred             eEEEEcCCchHHHHHHHHhccC--------------CCCeEEEEeCCHHHH-HHHHHHHHhC-CeEEEecCcccCCCCCC
Confidence            4788 69999998888765432              334443333445543 2222222222 48888887  5664 88


Q ss_pred             HHHHHHHHHHhhhcCCCcEEEEEeccCCccccc-cCHHHHHHHHHHcCCEEEEecccccccccccchhhhhcCCCCccEE
Q psy14299         80 CSFLEQTIQTSLAEKKIPLFVNATAGTTVLGAF-DPLDEIATVCEKYDLWMHVDACWGGSLIFSEKYSFVLKGINRANSV  158 (448)
Q Consensus        80 ~e~Le~~l~~~~~~~~~~~lVv~~~~~t~tG~~-~~l~~I~~ia~~~g~~l~VD~A~~~~~~~~~~~~~~~~~~~~aD~~  158 (448)
                      ++++++++++      ++++|++++.+|.+|.+ +|+++|+     +|+++|||++|+++..+++...        .|++
T Consensus       156 ~~~~~~~l~~------~t~lV~~~h~et~tG~~i~pi~~i~-----~g~~~~vDa~qs~g~~pidv~~--------~~~~  216 (386)
T 3qm2_A          156 KPMREWQLSD------NAAYLHYCPNETIDGIAIDETPDFG-----PEVVVTADFSSTILSAPLDVSR--------YGVI  216 (386)
T ss_dssp             CCGGGCCCCT------TCSCEEECSEETTTTEECCCCCCCC-----TTCCEEEECTTTTTSSCCCGGG--------CSEE
T ss_pred             chHHHhhcCC------CCcEEEEECCcCCcCEecCchhhhc-----CCCEEEEEcccccCCCCCCccc--------cCEE
Confidence            8888777643      57899999999999995 9999996     8999999999999999777432        2577


Q ss_pred             EECCccccCCCCceEEEEEeccchhhhhccCCcccccccCcccccccCCCCCcccCCCCchhHHHHHHHHHhChHHHHHH
Q psy14299        159 SWNPHKMLGAPLQCSILLIKEKGLLHQANATAATYLFQQDKFYDVSFDTGDKSVQCGRKVDAFKLWLMWKARGNLGFRHF  238 (448)
Q Consensus       159 ~~s~hK~l~~P~g~G~l~vr~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~g~~~~  238 (448)
                      ++++|||++ |.|+|+++++++. +....+..+.++.              +              .        +..+ 
T Consensus       217 ~~s~hK~lG-P~G~g~l~v~~~~-~~~~~~~~p~~~~--------------~--------------~--------~~~~-  257 (386)
T 3qm2_A          217 YAGAQKNIG-PAGLTLVIVREDL-LGKAHESCPSILD--------------Y--------------T--------VLND-  257 (386)
T ss_dssp             EEETTTTTC-CTTEEEEEEEGGG-CSCCCTTSCGGGC--------------H--------------H--------HHHH-
T ss_pred             EEecccccC-CCccEEEEECHHH-HhhhcccCCcHHH--------------H--------------H--------HHhh-
Confidence            899999995 9999999998864 3322111111110              0              0        0000 


Q ss_pred             HHHhhhhccCCCccchhhhhhhhhhhhhhhhhhhhhhhccccccccccCCCCCccccccchhhHHHHHHHHHhcCc-cHH
Q psy14299        239 VDNAVDCSRGSMTFSTLLCFDLQGLLHQANATAATYLFQQDKFYDVSFDTGDKSVQCGRKVDAFKLWLMWKARGNL-GFR  317 (448)
Q Consensus       239 i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-G~~  317 (448)
                        .                                                +....-++.+.++++..+++++.++ |++
T Consensus       258 --~------------------------------------------------~~~~gTp~v~~i~~l~~Al~~~~~~gG~~  287 (386)
T 3qm2_A          258 --N------------------------------------------------DSMFNTPPTFAWYLSGLVFKWLKAQGGVA  287 (386)
T ss_dssp             --C-------------------------------------------------------CCSHHHHHHHHHHHHHHHTHHH
T ss_pred             --c------------------------------------------------CCCCCCCcHHHHHHHHHHHHHHHHhcCHH
Confidence              0                                                0001123356678888899998888 899


Q ss_pred             HHHHHHHHHHHHHHHHhhcCCCe-EEeccCC--ce-eeEEEEeeccCCCccccchhhhhhhhhhhHHHHHHHHhCCcEEE
Q psy14299        318 HFVDNAVDCSRYFLSQISQRPGF-RLVIPEF--QC-TNICFWFIPVSLRDKVEDETWWSTLSKVAPRIKEKLVLGGTLMI  393 (448)
Q Consensus       318 ~~~~~~~~l~~~~~~~L~~~pg~-~l~~~~~--~~-~~v~f~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~L~~~g~~~~  393 (448)
                      ++.++..++++++++.|+++ ++ ... .++  +. ++++|.+...++                ...+.+.|.++| +.+
T Consensus       288 ~i~~~~~~l~~~l~~~l~~~-~~~~~~-~~~~~rs~~iv~f~~~~~~~----------------~~~~~~~L~~~g-I~~  348 (386)
T 3qm2_A          288 AMHKINQQKAELLYGVIDNS-DFYRND-VAQANRSRMNVPFQLADNTL----------------DKVFLEESFAAG-LHA  348 (386)
T ss_dssp             HHHHHHHHHHHHHHHHHHTC-SSEECC-BCGGGBCSSEEEEEESSGGG----------------HHHHHHHHHHTT-EEC
T ss_pred             HHHHHHHHHHHHHHHHHHHC-CCcccC-CCHHHcCceEEEEECCCccc----------------cHHHHHHHHHCC-CEE
Confidence            99999999999999999998 65 332 222  33 577887632111                136677788888 433


Q ss_pred             EeeecCCcccccEEEEEecCCCCCCHHHHHHHHHHHHHHHHH
Q psy14299        394 GYQPLQHRNLHNFFRLVTTCHPASSRQDMDYAIDQIELRGAE  435 (448)
Q Consensus       394 ~~~~~~g~~~~~~lRis~~~~~~~t~edid~l~~al~~~~~~  435 (448)
                      ..+ ....   +.+|+|+  +.+||++|||+|+++|+++.++
T Consensus       349 ~~g-~~~~---~~iRiS~--~~~~t~edId~l~~~l~~~~~~  384 (386)
T 3qm2_A          349 LKG-HRVV---GGMRASI--YNAMPIEGVKALTDFMIDFERR  384 (386)
T ss_dssp             CBC-CTTT---CSEEEEC--CTTSCHHHHHHHHHHHHHHHHH
T ss_pred             eCC-CCCc---CeEEEEc--CCCCCHHHHHHHHHHHHHHHHh
Confidence            221 1111   4599999  6899999999999999999875

>1v72_A Aldolase; PLP-dependent enzyme, lyase; HET: PLP; 2.05A {Pseudomonas putida} SCOP: c.67.1.1

Probab=99.91  E-value=1.1e-23  Score=208.89  Aligned_cols=282  Identities=17%  Similarity=0.200  Sum_probs=189.2

Q ss_pred             cEEEeCcHHHHHHHHHHHHHHhcCCcccccCCCCCCCeEEEecCCCchHHHHH--HHHh--CCCCCcEEEEecCCCCCcC
Q psy14299          4 KPFLLPGGSISNMYSICLARYRLDPDTKRKGLSHLPPLCMFTSEDSHYSMLKA--AHWL--GIGMDNVIRVKTNERGQMI   79 (448)
Q Consensus         4 ~g~~t~ggT~an~~al~~a~~~~~~~~~~~G~~~~~~~~Vl~~~~~H~s~~~~--~~~~--g~~~~~v~~v~~~~~g~id   79 (448)
                      .+++|+|||+++..++.+++.              +++.|+++...|++....  +...  |.   +++.+|.+ ++.+|
T Consensus        61 ~v~~~~~gt~a~~~al~~~~~--------------~gd~vi~~~~~~~~~~~~~~~~~~~~g~---~~~~v~~~-~~~~d  122 (356)
T 1v72_A           61 EVFLVPTGTAANALCLSAMTP--------------PWGNIYCHPASHINNDECGAPEFFSNGA---KLMTVDGP-AAKLD  122 (356)
T ss_dssp             EEEEESCHHHHHHHHHHTSCC--------------TTEEEEECTTSHHHHSSTTHHHHHTTSC---EEEECCCG-GGCCC
T ss_pred             cEEEeCCccHHHHHHHHHhcC--------------CCCEEEEcCccchhhhhchHHHHHhCCc---EEEEecCC-CCeEc
Confidence            379999999999988876533              577899999999998876  7777  87   78888875 57899


Q ss_pred             HHHHHH-HHHHhh-hcCCCcEEEEEeccCCcccc---ccCHHHHHHHHHHcCCEEEEecccccccccccchhhhhcCC-C
Q psy14299         80 CSFLEQ-TIQTSL-AEKKIPLFVNATAGTTVLGA---FDPLDEIATVCEKYDLWMHVDACWGGSLIFSEKYSFVLKGI-N  153 (448)
Q Consensus        80 ~e~Le~-~l~~~~-~~~~~~~lVv~~~~~t~tG~---~~~l~~I~~ia~~~g~~l~VD~A~~~~~~~~~~~~~~~~~~-~  153 (448)
                      +++|++ ++++.. ..+.++++|+++++++ +|.   .+++++|.++|++||+++|+|++|+.+............++ .
T Consensus       123 ~~~l~~~~i~~~~~~~~~~~~~v~~~~~~~-tG~~~~~~~l~~i~~~~~~~~~~li~D~a~~~~~~~~~~~~~~~~~~~~  201 (356)
T 1v72_A          123 IVRLRERTREKVGDVHTTQPACVSITQATE-VGSIYTLDEIEAIGDVCKSSSLGLHMDGSRFANALVSLGCSPAEMTWKA  201 (356)
T ss_dssp             HHHHHHHTTSSTTCTTSCEEEEEEEESSCT-TSCCCCHHHHHHHHHHHHHTTCEEEEEETTHHHHHHHHTCCTTTTTGGG
T ss_pred             HHHHHHHhhhcchhhccCCceEEEEEcCCC-CCccCCHHHHHHHHHHHHHcCCeEEEEchhhHhHhccCCCCHHHhhhhh
Confidence            999999 886411 1123578999998764 998   67799999999999999999999875432111101111111 1


Q ss_pred             CccEEEECCccccCCCCceEEEEEeccchhhhhccCCcccccccCcccccccCCCCCcccCCCCchhHHHHHHHHHhChH
Q psy14299        154 RANSVSWNPHKMLGAPLQCSILLIKEKGLLHQANATAATYLFQQDKFYDVSFDTGDKSVQCGRKVDAFKLWLMWKARGNL  233 (448)
Q Consensus       154 ~aD~~~~s~hK~l~~P~g~G~l~vr~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~  233 (448)
                      .+|++++++||+ ++|.|+|+++.+ +++......     +....         +.  .  ...                
T Consensus       202 ~~d~~~~s~sK~-g~~~G~g~~~~~-~~~~~~~~~-----~~~~~---------~~--~--~~~----------------  245 (356)
T 1v72_A          202 GVDALSFGATKN-GVLAAEAIVLFN-TSLATEMSY-----RRKRA---------GH--L--SSK----------------  245 (356)
T ss_dssp             TCCEEEECCGGG-TCSSCEEEEESS-GGGHHHHHH-----HHHHT---------TC--C--CSS----------------
T ss_pred             cCCEEEEecccC-CCcCccEEEEEC-HHHHhhHHH-----Hhhcc---------Cc--h--hhh----------------
Confidence            478999999999 679888888774 343332210     00000         00  0  000                


Q ss_pred             HHHHHHHHhhhhccCCCccchhhhhhhhhhhhhhhhhhhhhhhccccccccccCCCCCccccccchhhHHHHHHHHHhcC
Q psy14299        234 GFRHFVDNAVDCSRGSMTFSTLLCFDLQGLLHQANATAATYLFQQDKFYDVSFDTGDKSVQCGRKVDAFKLWLMWKARGN  313 (448)
Q Consensus       234 g~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  313 (448)
                                                                                        .......+++.+..
T Consensus       246 ------------------------------------------------------------------~~~~~~~~~~~l~~  259 (356)
T 1v72_A          246 ------------------------------------------------------------------MRFLSAQIDAYLTD  259 (356)
T ss_dssp             ------------------------------------------------------------------THHHHHHHHHHTST
T ss_pred             ------------------------------------------------------------------HHHHHHHHHHHHHh
Confidence                                                                              00011112223333


Q ss_pred             ccHHHHHHHHHHHHHHHHHHhhcCCCeEEeccCCceeeEEEEeeccCCCccccchhhhhhhhhhhHHHHHHHHhCCcEEE
Q psy14299        314 LGFRHFVDNAVDCSRYFLSQISQRPGFRLVIPEFQCTNICFWFIPVSLRDKVEDETWWSTLSKVAPRIKEKLVLGGTLMI  393 (448)
Q Consensus       314 ~G~~~~~~~~~~l~~~~~~~L~~~pg~~l~~~~~~~~~v~f~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~L~~~g~~~~  393 (448)
                      ..++++.++..++++++.+.|+++||+++. .++..+.+.+.+ +                    .++.+.|.++|+ .+
T Consensus       260 ~~~~~~~~~~~~~~~~l~~~L~~~~g~~~~-~~~~~~~~~~~~-~--------------------~~~~~~l~~~gi-~v  316 (356)
T 1v72_A          260 DLWLRNARKANAAAQRLAQGLEGLGGVEVL-GGTEANILFCRL-D--------------------SAMIDALLKAGF-GF  316 (356)
T ss_dssp             THHHHHHHHHHHHHHHHHHHHTTCTTEEEE-SCCCSSEEEEEE-C--------------------HHHHHHHHHTTC-BC
T ss_pred             hhHHHHHHHHHHHHHHHHHHHhhCCCcEEc-cCCCccEEEEEc-C--------------------HHHHHHHHhcCe-EE
Confidence            345556777888999999999999999987 544445444432 1                    167788888884 44


Q ss_pred             EeeecCCcccccEEEEEecCCCCCCHHHHHHHHHHHHHHHHH
Q psy14299        394 GYQPLQHRNLHNFFRLVTTCHPASSRQDMDYAIDQIELRGAE  435 (448)
Q Consensus       394 ~~~~~~g~~~~~~lRis~~~~~~~t~edid~l~~al~~~~~~  435 (448)
                      .++.+ +   ++++|+++  +..++++|+++++++|+++.++
T Consensus       317 ~~g~~-~---~~~iRi~~--~~~~~~~~i~~~~~~l~~~l~~  352 (356)
T 1v72_A          317 YHDRW-G---PNVVRFVT--SFATTAEDVDHLLNQVRLAADR  352 (356)
T ss_dssp             BCSSS-S---TTEEEEEC--CTTCCHHHHHHHHHHHHHTC--
T ss_pred             ecccc-C---CCeEEEEe--cCCCCHHHHHHHHHHHHHHHHh
Confidence            43222 2   37999998  7899999999999999987654

>3tqx_A 2-amino-3-ketobutyrate coenzyme A ligase; energy metabolism, transferase; HET: PLP; 2.30A {Coxiella burnetii}

Probab=99.91  E-value=6.8e-23  Score=206.58  Aligned_cols=289  Identities=16%  Similarity=0.135  Sum_probs=200.8

Q ss_pred             cEEEeCcHHHHHHHHHHHHHHhcCCcccccCCCCCCCeEEEecCCCchHHHHHHHHhCCCCCcEEEEecCCCCCcCHHHH
Q psy14299          4 KPFLLPGGSISNMYSICLARYRLDPDTKRKGLSHLPPLCMFTSEDSHYSMLKAAHWLGIGMDNVIRVKTNERGQMICSFL   83 (448)
Q Consensus         4 ~g~~t~ggT~an~~al~~a~~~~~~~~~~~G~~~~~~~~Vl~~~~~H~s~~~~~~~~g~~~~~v~~v~~~~~g~id~e~L   83 (448)
                      ..+++++||+++..++.+...              +++.|+++...|.++..+++..|.   +++.+|.     +|+++|
T Consensus       105 ~~i~~~sGt~a~~~~l~~~~~--------------~gd~v~~~~~~~~~~~~~~~~~g~---~~~~~~~-----~d~~~l  162 (399)
T 3tqx_A          105 DTILYSSCFDANGGLFETLLG--------------PEDAIISDELNHASIIDGIRLCKA---QRYRYKN-----NAMGDL  162 (399)
T ss_dssp             EEEEESCHHHHHHTTHHHHCC--------------TTCEEEEETTCCHHHHHHHHSCCS---EEEEECT-----TCTTHH
T ss_pred             cEEEECchHHHHHHHHHHhcC--------------CCCEEEECCcccHHHHHHHHHcCC---ceeEeCC-----CCHHHH
Confidence            357778889998887765432              667899999999999999998888   7888876     488999


Q ss_pred             HHHHHHhhhcCCCcEEEEEeccCCccccccCHHHHHHHHHHcCCEEEEecccccccccccc-hhhhhcCC-CCccEEEEC
Q psy14299         84 EQTIQTSLAEKKIPLFVNATAGTTVLGAFDPLDEIATVCEKYDLWMHVDACWGGSLIFSEK-YSFVLKGI-NRANSVSWN  161 (448)
Q Consensus        84 e~~l~~~~~~~~~~~lVv~~~~~t~tG~~~~l~~I~~ia~~~g~~l~VD~A~~~~~~~~~~-~~~~~~~~-~~aD~~~~s  161 (448)
                      ++.+++....+.++++|++++++|++|.+.|+++|.++|++||+++|+|++|+.+....+. ......++ ...|+++.+
T Consensus       163 ~~~l~~~~~~~~~~~~v~~~~~~nptG~~~~l~~i~~l~~~~~~~li~De~~~~~~~~~~~~~~~~~~~~~~~~di~~~s  242 (399)
T 3tqx_A          163 EAKLKEADEKGARFKLIATDGVFSMDGIIADLKSICDLADKYNALVMVDDSHAVGFIGENGRGTPEYCGVADRVDILTGT  242 (399)
T ss_dssp             HHHHHHHHTTTCSSEEEEEESEETTTTEECCHHHHHHHHHHTTCEEEEECTTTTTTSSTTSCCHHHHHTCTTCCSEEEEE
T ss_pred             HHHHHhhhccCCCceEEEEeCCCCCCCCcCCHHHHHHHHHHcCCEEEEECCccccccCCCCCchHHhhCCCCCCcEEEec
Confidence            9999875444447899999999999999999999999999999999999999765532211 01111121 346999999


Q ss_pred             CccccCCCCceEEEEEeccchhhhhccCCcccccccCcccccccCCCCCcccCCCCchhHHHHHHHHHhChHHHHHHHHH
Q psy14299        162 PHKMLGAPLQCSILLIKEKGLLHQANATAATYLFQQDKFYDVSFDTGDKSVQCGRKVDAFKLWLMWKARGNLGFRHFVDN  241 (448)
Q Consensus       162 ~hK~l~~P~g~G~l~vr~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~g~~~~i~~  241 (448)
                      +||++++|.| |+++.++ +...........|.....                   ...                     
T Consensus       243 ~sK~~~g~~g-G~~~~~~-~~~~~~~~~~~~~~~~~~-------------------~~~---------------------  280 (399)
T 3tqx_A          243 LGKALGGASG-GYTSGHK-EIIEWLRNRSRPYLFSNT-------------------VAP---------------------  280 (399)
T ss_dssp             SSSSSCSSCC-EEEEECH-HHHHHHHHHCHHHHSSCC-------------------CCH---------------------
T ss_pred             chHhcccCce-EEEEcCH-HHHHHHHHhCcceeccCC-------------------CcH---------------------
Confidence            9999997766 7776644 343333221112211000                   000                     


Q ss_pred             hhhhccCCCccchhhhhhhhhhhhhhhhhhhhhhhccccccccccCCCCCccccccchhhHHHHHHHHHhcCccHHHHHH
Q psy14299        242 AVDCSRGSMTFSTLLCFDLQGLLHQANATAATYLFQQDKFYDVSFDTGDKSVQCGRKVDAFKLWLMWKARGNLGFRHFVD  321 (448)
Q Consensus       242 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~  321 (448)
                                                                               ..+..+..+++... ++++++.+
T Consensus       281 ---------------------------------------------------------~~~~~~~~~l~~~~-~~~~~~~~  302 (399)
T 3tqx_A          281 ---------------------------------------------------------VIVATSLKVLELLK-TEGPQLRK  302 (399)
T ss_dssp             ---------------------------------------------------------HHHHHHHHHHHHHH-HTHHHHHH
T ss_pred             ---------------------------------------------------------HHHHHHHHHHHHHh-hccHHHHH
Confidence                                                                     00111222333332 45677888


Q ss_pred             HHHHHHHHHHHHhhcCCCeEEeccCCceeeEEEEeeccCCCccccchhhhhhhhhhhHHHHHHHHhCCcEEEEeeecCC-
Q psy14299        322 NAVDCSRYFLSQISQRPGFRLVIPEFQCTNICFWFIPVSLRDKVEDETWWSTLSKVAPRIKEKLVLGGTLMIGYQPLQH-  400 (448)
Q Consensus       322 ~~~~l~~~~~~~L~~~pg~~l~~~~~~~~~v~f~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~L~~~g~~~~~~~~~~g-  400 (448)
                      +..++++++.+.|+++ |++++  ++..+.+.+.+.. ..               ...++.+.|.++| +.+.+....+ 
T Consensus       303 ~~~~~~~~l~~~L~~~-g~~~~--~~~~~~~~~~~~~-~~---------------~~~~~~~~l~~~g-i~v~~~~~~~~  362 (399)
T 3tqx_A          303 QLQENSRYFRAGMEKL-GFQLV--PGNHPIIPVMLGD-AQ---------------LATNMADHLLQEG-IYVVGFSYPVV  362 (399)
T ss_dssp             HHHHHHHHHHHHHHHH-TCCBC--CCSSSEEEEEEEC-HH---------------HHHHHHHHHHHTT-EECCEECTTTS
T ss_pred             HHHHHHHHHHHHHHHc-CCCcC--CCCCCEEEEEeCC-HH---------------HHHHHHHHHHHCC-CEEeeeCCCCC
Confidence            9999999999999998 88774  4555666554421 10               1247889999998 4454443221 


Q ss_pred             cccccEEEEEecCCCCCCHHHHHHHHHHHHHHHHHh
Q psy14299        401 RNLHNFFRLVTTCHPASSRQDMDYAIDQIELRGAEV  436 (448)
Q Consensus       401 ~~~~~~lRis~~~~~~~t~edid~l~~al~~~~~~~  436 (448)
                      ....+++|+++  +..++++|+++++++|+++.+++
T Consensus       363 ~~~~~~iRi~~--~~~~~~~~i~~~~~~l~~~~~~~  396 (399)
T 3tqx_A          363 PMGKARIRVQM--SAVHTQQQLDRAIEAFGQVGKKL  396 (399)
T ss_dssp             CTTCEEEEEEC--CTTCCHHHHHHHHHHHHHHHHHT
T ss_pred             CCCCceEEEEe--ecCCCHHHHHHHHHHHHHHHHHh
Confidence            11237999999  67899999999999999998765

>1qz9_A Kynureninase; kynurenine, tryptophan, PLP, vitamin B6, pyridoxal-5'-phosph hydrolase; HET: PLP P3G; 1.85A {Pseudomonas fluorescens} SCOP: c.67.1.3

Probab=99.91  E-value=4.9e-22  Score=201.77  Aligned_cols=295  Identities=12%  Similarity=0.057  Sum_probs=199.1

Q ss_pred             cEEEeCcHHHHHHHHHHHHHHhcCCcccccCCCCCCC-eEEEecCCCchHHHHHHH----Hh--CCCCCcEEEEecCCCC
Q psy14299          4 KPFLLPGGSISNMYSICLARYRLDPDTKRKGLSHLPP-LCMFTSEDSHYSMLKAAH----WL--GIGMDNVIRVKTNERG   76 (448)
Q Consensus         4 ~g~~t~ggT~an~~al~~a~~~~~~~~~~~G~~~~~~-~~Vl~~~~~H~s~~~~~~----~~--g~~~~~v~~v~~~~~g   76 (448)
                      .++||+|||+++..++.+++....     .+   .++ .+|+++..+|.++..++.    ..  |.   +++.++.    
T Consensus        90 ~v~~~~g~t~al~~al~~~~~~~~-----~~---~~gd~vii~~~~~~~~~~~~~~~~~~~~~~g~---~~~~v~~----  154 (416)
T 1qz9_A           90 EVVVTDTTSINLFKVLSAALRVQA-----TR---SPERRVIVTETSNFPTDLYIAEGLADMLQQGY---TLRLVDS----  154 (416)
T ss_dssp             SEEECSCHHHHHHHHHHHHHHHHH-----HH---STTCCEEEEETTSCHHHHHHHHHHHHHHCSSC---EEEEESS----
T ss_pred             cEEEeCChhHHHHHHHHhhccccc-----cc---CCCCcEEEEcCCCCCchHHHHHHHHHHhcCCc---eEEEeCc----
Confidence            578999999998777776652100     00   033 357788889998766543    23  66   6777775    


Q ss_pred             CcCHHHHHHHHHHhhhcCCCcEEEEEeccCCccccccCHHHHHHHHHHcCCEEEEecccccccccccchhhhhcCCCCcc
Q psy14299         77 QMICSFLEQTIQTSLAEKKIPLFVNATAGTTVLGAFDPLDEIATVCEKYDLWMHVDACWGGSLIFSEKYSFVLKGINRAN  156 (448)
Q Consensus        77 ~id~e~Le~~l~~~~~~~~~~~lVv~~~~~t~tG~~~~l~~I~~ia~~~g~~l~VD~A~~~~~~~~~~~~~~~~~~~~aD  156 (448)
                         +++|++++++      ++++|++++++|++|.+.|+++|.++|++||+++|+|++|+.+....+. .    .. .+|
T Consensus       155 ---~~~l~~~i~~------~~~~v~~~~~~nptG~~~~l~~i~~l~~~~~~~li~D~a~~~g~~~~~~-~----~~-~~d  219 (416)
T 1qz9_A          155 ---PEELPQAIDQ------DTAVVMLTHVNYKTGYMHDMQALTALSHECGALAIWDLAHSAGAVPVDL-H----QA-GAD  219 (416)
T ss_dssp             ---GGGHHHHCST------TEEEEEEESBCTTTCBBCCHHHHHHHHHHHTCEEEEECTTTTTTSCCCH-H----HH-TCS
T ss_pred             ---HHHHHHHhCC------CceEEEEeccccCcccccCHHHHHHHHHHcCCEEEEEccccccCcCCCh-h----hc-CCC
Confidence               7888888753      5889999999999999999999999999999999999999977654331 1    11 369


Q ss_pred             EEEECCccccCCCCce-EEEEEeccchhhhhccCCcccccccCcccccccCCC-CCcccCCCCchhHHHHHHHHHhChHH
Q psy14299        157 SVSWNPHKMLGAPLQC-SILLIKEKGLLHQANATAATYLFQQDKFYDVSFDTG-DKSVQCGRKVDAFKLWLMWKARGNLG  234 (448)
Q Consensus       157 ~~~~s~hK~l~~P~g~-G~l~vr~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~g~~g  234 (448)
                      ++++++||+++++.++ |+++++++ +.........+|.....     .++.. .+..                      
T Consensus       220 ~~~~s~~K~l~~g~~~~g~l~~~~~-~~~~l~~~~~g~~g~~~-----~~~~~~~~~~----------------------  271 (416)
T 1qz9_A          220 YAIGCTYKYLNGGPGSQAFVWVSPQ-LCDLVPQPLSGWFGHSR-----QFAMEPRYEP----------------------  271 (416)
T ss_dssp             EEEECSSSTTCCCTTCCCEEEECTT-TTTTSCCSCCCGGGBCT-----TSCCCSSCCB----------------------
T ss_pred             EEEecCcccCCCCCCCeEEEEECHH-HHhccCCCccccCcccc-----ccCCCCccCC----------------------
Confidence            9999999998777777 99988665 33222111111111100     00000 0000                      


Q ss_pred             HHHHHHHhhhhccCCCccchhhhhhhhhhhhhhhhhhhhhhhccccccccccCCCCCcc--ccccchhhHHHHHHHHHhc
Q psy14299        235 FRHFVDNAVDCSRGSMTFSTLLCFDLQGLLHQANATAATYLFQQDKFYDVSFDTGDKSV--QCGRKVDAFKLWLMWKARG  312 (448)
Q Consensus       235 ~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~  312 (448)
                                                                          ....+.+  ...+...+.++..+++...
T Consensus       272 ----------------------------------------------------~~~~~~~~~~~~~~~~~~a~~~al~~~~  299 (416)
T 1qz9_A          272 ----------------------------------------------------SNGIARYLCGTQPITSLAMVECGLDVFA  299 (416)
T ss_dssp             ----------------------------------------------------CSSGGGGCCSCCCHHHHHHHHHHHHHHT
T ss_pred             ----------------------------------------------------CcchHHhcCCCCCHHHHHHHHHHHHHHH
Confidence                                                                0000001  1122344556667788888


Q ss_pred             CccHHHHHHHHHHHHHHHHHHhhcC-C--CeEEeccCC----ceeeEEEEeeccCCCccccchhhhhhhhhhhHHHHHHH
Q psy14299        313 NLGFRHFVDNAVDCSRYFLSQISQR-P--GFRLVIPEF----QCTNICFWFIPVSLRDKVEDETWWSTLSKVAPRIKEKL  385 (448)
Q Consensus       313 ~~G~~~~~~~~~~l~~~~~~~L~~~-p--g~~l~~~~~----~~~~v~f~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~L  385 (448)
                      .+|++++.++..++++++.+.|+++ |  |++++ .+.    ..+++.|.+.  +                 ..++.+.|
T Consensus       300 ~~~~~~~~~~~~~~~~~l~~~L~~~~~~~g~~~~-~~~~~~~~~~~~~~~~~--~-----------------~~~l~~~l  359 (416)
T 1qz9_A          300 QTDMASLRRKSLALTDLFIELVEQRCAAHELTLV-TPREHAKRGSHVSFEHP--E-----------------GYAVIQAL  359 (416)
T ss_dssp             TSCHHHHHHHHHHHHHHHHHHHHHHHTTSCCEEC-SCSSGGGBCSEEEEECT--T-----------------HHHHHHHH
T ss_pred             hcCHHHHHHHHHHHHHHHHHHHHhhccCCCeEEe-CCCCHHHcCCEEEEecC--C-----------------HHHHHHHH
Confidence            8899999999999999999999986 7  89987 432    2455555431  0                 13688889


Q ss_pred             HhCCcEEEEeeecCCcccccEEEEEecCCCCCCHHHHHHHHHHHHHHHHHh
Q psy14299        386 VLGGTLMIGYQPLQHRNLHNFFRLVTTCHPASSRQDMDYAIDQIELRGAEV  436 (448)
Q Consensus       386 ~~~g~~~~~~~~~~g~~~~~~lRis~~~~~~~t~edid~l~~al~~~~~~~  436 (448)
                      .++| +.+..   .+.   +++|+++. ++++|++|+++++++|+++.++.
T Consensus       360 ~~~g-i~~~~---~~~---~~lRis~~-~~~~t~~~i~~~~~~l~~~~~~~  402 (416)
T 1qz9_A          360 IDRG-VIGDY---REP---RIMRFGFT-PLYTTFTEVWDAVQILGEILDRK  402 (416)
T ss_dssp             HTTT-EECEE---ETT---TEEEEECC-TTTCCHHHHHHHHHHHHHHHHHT
T ss_pred             HhCC-cEecc---CCC---CeEEEeCc-ccCCCHHHHHHHHHHHHHHHhcc
Confidence            9998 44332   122   78999994 36899999999999999998764

>2vyc_A Biodegradative arginine decarboxylase; pyridoxal phosphate, PLP-dependent E lyase, acid resistance; HET: LLP; 2.4A {Escherichia coli}

Probab=99.91  E-value=3.5e-23  Score=226.21  Aligned_cols=302  Identities=13%  Similarity=0.060  Sum_probs=203.8

Q ss_pred             cEEEeCcHHHHHHHHHHHHHHhcCCcccccCCCCCCCeEEEecCCCchHHHHHHHHhCCCCCcEEEEecCCC-----CCc
Q psy14299          4 KPFLLPGGSISNMYSICLARYRLDPDTKRKGLSHLPPLCMFTSEDSHYSMLKAAHWLGIGMDNVIRVKTNER-----GQM   78 (448)
Q Consensus         4 ~g~~t~ggT~an~~al~~a~~~~~~~~~~~G~~~~~~~~Vl~~~~~H~s~~~~~~~~g~~~~~v~~v~~~~~-----g~i   78 (448)
                      ..++++|+|++|..++.+...              +++.|++++.+|.|+..++...|.   +++.++.+.+     +.+
T Consensus       223 ~i~~~~Gtt~a~~~~i~al~~--------------~GD~Vlv~~~~h~s~~~~~~~~G~---~~v~v~~~~~~~g~~g~i  285 (755)
T 2vyc_A          223 SWSVVVGTSGSNRTIMQACMT--------------DNDVVVVDRNCHKSIEQGLMLTGA---KPVYMVPSRNRYGIIGPI  285 (755)
T ss_dssp             EEEESSHHHHHHHHHHHHHCC--------------TTCEEEEESSCCHHHHHHHHHHCC---EEEEECCCBCTTSCBCCC
T ss_pred             eEEECCcHHHHHHHHHHHhcC--------------CCCEEEECCCchHHHHHHHHHcCC---EEEEEeCCCCcccccccc
Confidence            346677777888888877644              677899999999999999999998   7888887543     346


Q ss_pred             -----CHHHHHHHHHHh----hhcCCCcEEEEEeccCCccccccCHHHHHHHHHHcCCEEEEecccccccccccchhhhh
Q psy14299         79 -----ICSFLEQTIQTS----LAEKKIPLFVNATAGTTVLGAFDPLDEIATVCEKYDLWMHVDACWGGSLIFSEKYSFVL  149 (448)
Q Consensus        79 -----d~e~Le~~l~~~----~~~~~~~~lVv~~~~~t~tG~~~~l~~I~~ia~~~g~~l~VD~A~~~~~~~~~~~~~~~  149 (448)
                           |+++|+++|++.    ...+.+|++++++++ |++|.+.|+++|+++|++||+++|||+||+.+..+.+..+. .
T Consensus       286 ~~~~~d~e~le~~i~~~~~~k~~~~~~~klvil~~p-n~~G~v~dl~~I~~ia~~~~~~livDeA~~~~~~~~~~~~~-~  363 (755)
T 2vyc_A          286 YPQEMQPETLQKKISESPLTKDKAGQKPSYCVVTNC-TYDGVCYNAKEAQDLLEKTSDRLHFDEAWYGYARFNPIYAD-H  363 (755)
T ss_dssp             CGGGGSHHHHHHHHHHCTTTGGGTTCCCSCEEEESS-CTTSEEECHHHHHHHHTTTCSEEEEECTTCTTGGGCGGGTT-S
T ss_pred             CcCCCCHHHHHHHHHhCccccccccCCCeEEEEECC-CCCceecCHHHHHHHHHHcCCEEEEECcCchhcccCcccCC-c
Confidence                 999999999762    113445668888886 67999999999999999999999999999876443332211 0


Q ss_pred             cCCCC--ccE------EEECCccccCCCCceEEEEEeccc-hhh-hhccCCcccccccCcccccccCCCCCcccCCCCch
Q psy14299        150 KGINR--ANS------VSWNPHKMLGAPLQCSILLIKEKG-LLH-QANATAATYLFQQDKFYDVSFDTGDKSVQCGRKVD  219 (448)
Q Consensus       150 ~~~~~--aD~------~~~s~hK~l~~P~g~G~l~vr~~~-~~~-~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~  219 (448)
                      ..+..  +|+      ++.|+||++++|.++|+++++++. .+. .........+                  +.+    
T Consensus       364 ~~~~g~~aD~~~~~~iv~~S~hK~L~g~~~g~~i~~~~~~~~i~~~~~~~~~~~~------------------~s~----  421 (755)
T 2vyc_A          364 YAMRGEPGDHNGPTVFATHSTHKLLNALSQASYIHVREGRGAINFSRFNQAYMMH------------------ATT----  421 (755)
T ss_dssp             SSSCSCCCCCSSBEEEEEEETTTSSSCCTTCEEEEEECCBTCCCHHHHHHHHHHT------------------SCS----
T ss_pred             chhcCCcCCccCCCeEEEECccccccCcCCeeeeeecCcccccCHHHHHHHHHHh------------------CCC----
Confidence            11122  566      999999999999999999997751 010 0000000000                  000    


Q ss_pred             hHHHHHHHHHhChHHHHHHHHHhhhhccCCCccchhhhhhhhhhhhhhhhhhhhhhhccccccccccCCCCCccccccch
Q psy14299        220 AFKLWLMWKARGNLGFRHFVDNAVDCSRGSMTFSTLLCFDLQGLLHQANATAATYLFQQDKFYDVSFDTGDKSVQCGRKV  299 (448)
Q Consensus       220 ~~~~~~~~~~~g~~g~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  299 (448)
                                                                                                 .++..
T Consensus       422 ---------------------------------------------------------------------------sp~~~  426 (755)
T 2vyc_A          422 ---------------------------------------------------------------------------SPLYA  426 (755)
T ss_dssp             ---------------------------------------------------------------------------SCCHH
T ss_pred             ---------------------------------------------------------------------------CHHHH
Confidence                                                                                       01122


Q ss_pred             hhHHHHHHHHHhcCccHHHHHHHHHHHHHHHHHHhhcCCC---------eEEeccCCce---------------------
Q psy14299        300 DAFKLWLMWKARGNLGFRHFVDNAVDCSRYFLSQISQRPG---------FRLVIPEFQC---------------------  349 (448)
Q Consensus       300 ~~~~~~~~~~~~~~~G~~~~~~~~~~l~~~~~~~L~~~pg---------~~l~~~~~~~---------------------  349 (448)
                      .+.++..+++.+..+|.+++.++..++++++++.|++++|         |+++ .+...                     
T Consensus       427 ~iaal~aA~~~l~~~gg~~~~~~~~~~a~~~r~~L~~l~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~  505 (755)
T 2vyc_A          427 ICASNDVAVSMMDGNSGLSLTQEVIDEAVDFRQAMARLYKEFTADGSWFFKPW-NKEVVTDPQTGKTYDFADAPTKLLTT  505 (755)
T ss_dssp             HHHHHHHHHHHHSTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTCCCCEES-SCSEEECTTTCCEEEGGGSCHHHHHH
T ss_pred             HHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhccccccccccceeecc-Cchhccccccccccccccccchhccc
Confidence            3444556677777776678889999999999999999888         8877 33211                     


Q ss_pred             ----------------------------eeEEEEeeccCCCccccchhhhhhhhhhhHHHHHHHHhCCcEEEEeeecCCc
Q psy14299        350 ----------------------------TNICFWFIPVSLRDKVEDETWWSTLSKVAPRIKEKLVLGGTLMIGYQPLQHR  401 (448)
Q Consensus       350 ----------------------------~~v~f~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~L~~~g~~~~~~~~~~g~  401 (448)
                                                  ..++|...+.+.++..      +..+--...+.+.|.+.| +.+...   + 
T Consensus       506 ~~~~~~~~~~~~~h~~~~~~~~~~~~Dp~~v~i~~~~~~~~G~~------~~~g~~~~~l~~~L~~~g-I~~e~~---~-  574 (755)
T 2vyc_A          506 VQDCWVMHPGESWHGFKDIPDNWSMLDPIKVSILAPGMGEDGEL------EETGVPAALVTAWLGRHG-IVPTRT---T-  574 (755)
T ss_dssp             CGGGTBCCTTCTTTCCTTCCTTSEEECTTEEEEECSCBCTTSSB------CSSCCCHHHHHHHHHTTT-CCCSEE---C-
T ss_pred             hhhhhccCcccccccccccCCCccccCCeEEEEEcCCCCCCCCc------cccCCcHHHHHHHHHHCC-CEEeec---C-
Confidence                                        1233332211221100      000111236777888877 433222   2 


Q ss_pred             ccccEEEEEecCCCCCCHHHHHHHHHHHHHHHHHhH
Q psy14299        402 NLHNFFRLVTTCHPASSRQDMDYAIDQIELRGAEVD  437 (448)
Q Consensus       402 ~~~~~lRis~~~~~~~t~edid~l~~al~~~~~~~~  437 (448)
                        .+.+|+++  |+.+|++|+++|+++|+++.+...
T Consensus       575 --~~~v~~~~--~~g~t~~~~~~l~~al~~~~~~~~  606 (755)
T 2vyc_A          575 --DFQIMFLF--SMGVTRGKWGTLVNTLCSFKRHYD  606 (755)
T ss_dssp             --SSEEEEEC--CTTCCTTTTHHHHHHHHHHHHHHH
T ss_pred             --CCeEEEEE--CCCCCHHHHHHHHHHHHHHHHhhh
Confidence              26899999  899999999999999999987664

>3dzz_A Putative pyridoxal 5'-phosphate-dependent C-S LYA; putative PLP-dependent aminotransferase; HET: MSE LLP PG4; 1.61A {Lactobacillus delbrueckii subsp} SCOP: c.67.1.0

Probab=99.91  E-value=1.5e-22  Score=203.45  Aligned_cols=289  Identities=13%  Similarity=0.088  Sum_probs=196.9

Q ss_pred             cEEEeCcHHHHHHHHHHHHHHhcCCcccccCCCCCCCeEEEecCCCchHHHHHHHHhCCCCCcEEEEecCC-C--CCcCH
Q psy14299          4 KPFLLPGGSISNMYSICLARYRLDPDTKRKGLSHLPPLCMFTSEDSHYSMLKAAHWLGIGMDNVIRVKTNE-R--GQMIC   80 (448)
Q Consensus         4 ~g~~t~ggT~an~~al~~a~~~~~~~~~~~G~~~~~~~~Vl~~~~~H~s~~~~~~~~g~~~~~v~~v~~~~-~--g~id~   80 (448)
                      ..++|+|||+++..++.++..              +++.|+++..+|.++...++..|.   +++.+|.++ +  +.+|+
T Consensus        87 ~i~~~~g~~~a~~~~~~~l~~--------------~gd~vl~~~~~~~~~~~~~~~~g~---~~~~~~~~~~~~~~~~d~  149 (391)
T 3dzz_A           87 WCVFASGVVPAISAMVRQFTS--------------PGDQILVQEPVYNMFYSVIEGNGR---RVISSDLIYENSKYSVNW  149 (391)
T ss_dssp             GEEEESCHHHHHHHHHHHHSC--------------TTCEEEECSSCCHHHHHHHHHTTC---EEEECCCEEETTEEECCH
T ss_pred             HEEECCCHHHHHHHHHHHhCC--------------CCCeEEECCCCcHHHHHHHHHcCC---EEEEeeeeecCCceeecH
Confidence            578999999999988877633              567899999999999999999998   788888752 2  35999


Q ss_pred             HHHHHHHHHhhhcCCCcEEEEEeccCCccccc---cCHHHHHHHHHHcCCEEEEecccccccccccchhhhhcCCC--Cc
Q psy14299         81 SFLEQTIQTSLAEKKIPLFVNATAGTTVLGAF---DPLDEIATVCEKYDLWMHVDACWGGSLIFSEKYSFVLKGIN--RA  155 (448)
Q Consensus        81 e~Le~~l~~~~~~~~~~~lVv~~~~~t~tG~~---~~l~~I~~ia~~~g~~l~VD~A~~~~~~~~~~~~~~~~~~~--~a  155 (448)
                      ++|++++++     .++++|++++++|++|.+   .++++|.++|++||+++|+|++|+.+......... +..+.  ..
T Consensus       150 ~~l~~~l~~-----~~~~~v~i~~p~nptG~~~~~~~l~~i~~~~~~~~~~li~De~~~~~~~~g~~~~~-~~~~~~~~~  223 (391)
T 3dzz_A          150 ADLEEKLAT-----PSVRMMVFCNPHNPIGYAWSEEEVKRIAELCAKHQVLLISDEIHGDLVLTDEDITP-AFTVDWDAK  223 (391)
T ss_dssp             HHHHHHHTS-----TTEEEEEEESSBTTTTBCCCHHHHHHHHHHHHHTTCEEEEECTTTTCBCSSCCCCC-GGGSCTTTG
T ss_pred             HHHHHHHhc-----cCceEEEEECCCCCCCcccCHHHHHHHHHHHHHCCCEEEEecccccccCCCCCcee-hhhcCcccc
Confidence            999999963     258899999999999999   88999999999999999999999865542111111 11111  14


Q ss_pred             c--EEEECCccccC-CCCceEEEEEeccchhhhhccCCcccccccCcccccccCCCCCcccCCCCchhHHHHHHHHHhCh
Q psy14299        156 N--SVSWNPHKMLG-APLQCSILLIKEKGLLHQANATAATYLFQQDKFYDVSFDTGDKSVQCGRKVDAFKLWLMWKARGN  232 (448)
Q Consensus       156 D--~~~~s~hK~l~-~P~g~G~l~vr~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~  232 (448)
                      |  +++.++||+++ ....+|+++++++++..........+..              +                      
T Consensus       224 d~~i~~~s~sK~~g~~G~r~G~~~~~~~~~~~~~~~~~~~~~~--------------~----------------------  267 (391)
T 3dzz_A          224 NWVVSLISPSKTFNLAALHAACAIIPNPDLRARAEESFFLAGI--------------G----------------------  267 (391)
T ss_dssp             GGEEEEECSHHHHTCTTTCCEEEECCSHHHHHHHHHHHHHHTC--------------S----------------------
T ss_pred             CcEEEEEeChhhccccchhheEEEECCHHHHHHHHHHHHhhcc--------------C----------------------
Confidence            5  88999999986 3356788877645443332110000000              0                      


Q ss_pred             HHHHHHHHHhhhhccCCCccchhhhhhhhhhhhhhhhhhhhhhhccccccccccCCCCCccccccchhhHHHHHHHHHhc
Q psy14299        233 LGFRHFVDNAVDCSRGSMTFSTLLCFDLQGLLHQANATAATYLFQQDKFYDVSFDTGDKSVQCGRKVDAFKLWLMWKARG  312 (448)
Q Consensus       233 ~g~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  312 (448)
                                                                                    +.+.+.+.++..+++. .
T Consensus       268 --------------------------------------------------------------~~~~~~~~a~~~~l~~-~  284 (391)
T 3dzz_A          268 --------------------------------------------------------------EPNLLAIPAAIAAYEE-G  284 (391)
T ss_dssp             --------------------------------------------------------------SCCTTHHHHHHHHHHH-C
T ss_pred             --------------------------------------------------------------CCCHHHHHHHHHHHhc-c
Confidence                                                                          0001111122222322 2


Q ss_pred             CccHHHHHHHHHHHHHHHHHHhhc-CCCeEEeccCCceeeEE-EEeeccCCCccccchhhhhhhhhhhHHHHHHHH-hCC
Q psy14299        313 NLGFRHFVDNAVDCSRYFLSQISQ-RPGFRLVIPEFQCTNIC-FWFIPVSLRDKVEDETWWSTLSKVAPRIKEKLV-LGG  389 (448)
Q Consensus       313 ~~G~~~~~~~~~~l~~~~~~~L~~-~pg~~l~~~~~~~~~v~-f~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~L~-~~g  389 (448)
                      .+.++++.++..++++++.+.|++ +||++++  .+..+.+. +.+...+.+               ..++.+.|. ++|
T Consensus       285 ~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~--~~~~~~~~~~~~~~~~~~---------------~~~~~~~l~~~~g  347 (391)
T 3dzz_A          285 HDWLRELKQVLRDNFAYAREFLAKEVPEVKVL--DSNASYLAWVDISALGMN---------------AEDFCKYLREKTG  347 (391)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHCTTSEEC--CCCBSSEEEEECGGGCSC---------------HHHHHHHHHHHHC
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhhCCCcEEe--ccCceEEEEEehhhcCCC---------------HHHHHHHHHHhCC
Confidence            344677888889999999999999 8999986  34444444 332211121               237888886 778


Q ss_pred             cEEEEeeecCCcccccEEEEEecCCCCCCHHHHHHHHHHHHHHHHHh
Q psy14299        390 TLMIGYQPLQHRNLHNFFRLVTTCHPASSRQDMDYAIDQIELRGAEV  436 (448)
Q Consensus       390 ~~~~~~~~~~g~~~~~~lRis~~~~~~~t~edid~l~~al~~~~~~~  436 (448)
                       +.+.++...+...++++|+++  +  ++++|++++++.|+++.+++
T Consensus       348 -i~v~~g~~~~~~~~~~iRis~--~--~~~~~i~~~l~~l~~~l~~~  389 (391)
T 3dzz_A          348 -LIISAGNGYRGNGHEFVRINL--A--CPKELVIDGMQRLKQGVLNL  389 (391)
T ss_dssp             -EECEESGGGCTTGGGEEEEEC--C--SCHHHHHHHHHHHHHHHHTC
T ss_pred             -EEEeCchhhCCCCCCEEEEEe--c--CCHHHHHHHHHHHHHHHHHh
Confidence             555554333322248999999  3  58999999999999988754

>2w8t_A SPT, serine palmitoyltransferase; HET: LLP; 1.25A {Sphingomonas paucimobilis} PDB: 2w8u_A* 2w8w_A* 2xbn_A* 2w8j_A* 2w8v_A* 2jg2_A* 2jgt_A 2x8u_A*

Probab=99.90  E-value=1.1e-21  Score=200.98  Aligned_cols=287  Identities=14%  Similarity=0.146  Sum_probs=198.9

Q ss_pred             cEEEeCcHHHHHHHHHHHHHHhcCCcccccCCCCCCCeEEEecCCCchHHHHHHHHhCCCCCcEEEEecCCCCCcCHHHH
Q psy14299          4 KPFLLPGGSISNMYSICLARYRLDPDTKRKGLSHLPPLCMFTSEDSHYSMLKAAHWLGIGMDNVIRVKTNERGQMICSFL   83 (448)
Q Consensus         4 ~g~~t~ggT~an~~al~~a~~~~~~~~~~~G~~~~~~~~Vl~~~~~H~s~~~~~~~~g~~~~~v~~v~~~~~g~id~e~L   83 (448)
                      ..+++++||++|..++.++..              +++.|+++...|.++..+++..|.   +++.++.     +|+++|
T Consensus       126 ~~i~~~sGs~a~~~al~~l~~--------------~gd~vl~~~~~h~~~~~~~~~~g~---~~~~~~~-----~d~~~l  183 (427)
T 2w8t_A          126 GAIVFSTGYMANLGIISTLAG--------------KGEYVILDADSHASIYDGCQQGNA---EIVRFRH-----NSVEDL  183 (427)
T ss_dssp             EEEEESCHHHHHHHHHHHHSC--------------TTCEEEEETTCCHHHHHHHHHSCS---EEEEECT-----TCHHHH
T ss_pred             ceEEecCcHHHHHHHHHHhcC--------------CCCEEEECCcccHHHHHHHHHcCC---eeEEeCC-----CCHHHH
Confidence            468889999999888766432              567899999999999999999887   6777774     599999


Q ss_pred             HHHHHHhhhcCCCcEEEEEeccCCccccccCHHHHHHHHHHcCCEEEEecccccccccccchh-hhhcCC-CCccEEEEC
Q psy14299         84 EQTIQTSLAEKKIPLFVNATAGTTVLGAFDPLDEIATVCEKYDLWMHVDACWGGSLIFSEKYS-FVLKGI-NRANSVSWN  161 (448)
Q Consensus        84 e~~l~~~~~~~~~~~lVv~~~~~t~tG~~~~l~~I~~ia~~~g~~l~VD~A~~~~~~~~~~~~-~~~~~~-~~aD~~~~s  161 (448)
                      ++++++..+  .++++|+++++++++|.+.|+++|.++|++||+++++|++|+.+.+...... ....++ ..+|+++.+
T Consensus       184 e~~l~~~~~--~~~~~v~~~~~~n~tG~~~~l~~l~~l~~~~g~~li~Dea~~~~~~~~~g~~~~~~~~~~~~~di~~~s  261 (427)
T 2w8t_A          184 DKRLGRLPK--EPAKLVVLEGVYSMLGDIAPLKEMVAVAKKHGAMVLVDEAHSMGFFGPNGRGVYEAQGLEGQIDFVVGT  261 (427)
T ss_dssp             HHHHHTSCS--SSCEEEEEESEETTTTEECCHHHHHHHHHHTTCEEEEECTTTTTTSSTTSCCHHHHTTCTTCCSEEEEE
T ss_pred             HHHHHhccC--CCCeEEEEcCCCCCCCCccCHHHHHHHHHHcCCEEEEECCccccccCCCCCchHhhcCCCcCCcEEEec
Confidence            999975211  2578999999999999999999999999999999999999998765311000 000121 247999999


Q ss_pred             CccccCCCCceEEEEEeccchhhhhccCCcccccccCcccccccCCCCCcccCCCCchhHHHHHHHHHhChHHHHHHHHH
Q psy14299        162 PHKMLGAPLQCSILLIKEKGLLHQANATAATYLFQQDKFYDVSFDTGDKSVQCGRKVDAFKLWLMWKARGNLGFRHFVDN  241 (448)
Q Consensus       162 ~hK~l~~P~g~G~l~vr~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~g~~~~i~~  241 (448)
                      +||+++ +.| |+++.++ ++.........+|.+...                 ..                        
T Consensus       262 ~sK~~g-~~g-G~v~~~~-~l~~~l~~~~~~~~~~~~-----------------~~------------------------  297 (427)
T 2w8t_A          262 FSKSVG-TVG-GFVVSNH-PKFEAVRLACRPYIFTAS-----------------LP------------------------  297 (427)
T ss_dssp             SSSTTC-SCC-EEEEECC-TTGGGGGGTCHHHHSSCC-----------------CC------------------------
T ss_pred             chhhhc-cCC-CEEEeCH-HHHHHHHHhcccccccCC-----------------CC------------------------
Confidence            999998 445 7777754 444333221112211100                 00                        


Q ss_pred             hhhhccCCCccchhhhhhhhhhhhhhhhhhhhhhhccccccccccCCCCCccccccchhhHHHHHHHHHhcCccHHHHHH
Q psy14299        242 AVDCSRGSMTFSTLLCFDLQGLLHQANATAATYLFQQDKFYDVSFDTGDKSVQCGRKVDAFKLWLMWKARGNLGFRHFVD  321 (448)
Q Consensus       242 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~  321 (448)
                                                                              ...+.++..+++....  ++++.+
T Consensus       298 --------------------------------------------------------~~~~aa~~~al~~~~~--~~~~~~  319 (427)
T 2w8t_A          298 --------------------------------------------------------PSVVATATTSIRKLMT--AHEKRE  319 (427)
T ss_dssp             --------------------------------------------------------HHHHHHHHHHHHHHTS--CHHHHH
T ss_pred             --------------------------------------------------------HHHHHHHHHHHHHHhc--CHHHHH
Confidence                                                                    0111112233444322  567888


Q ss_pred             HHHHHHHHHHHHhhcCCCeEEeccCC-ceeeEEEEeeccCCCccccchhhhhhhhhhhHHHHHHHHhCCcEEEEeeecCC
Q psy14299        322 NAVDCSRYFLSQISQRPGFRLVIPEF-QCTNICFWFIPVSLRDKVEDETWWSTLSKVAPRIKEKLVLGGTLMIGYQPLQH  400 (448)
Q Consensus       322 ~~~~l~~~~~~~L~~~pg~~l~~~~~-~~~~v~f~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~L~~~g~~~~~~~~~~g  400 (448)
                      +..++++++.+.|+++ |+++. .++ ..+++.+.+.. .               ....++.+.|.++| +.+.+....+
T Consensus       320 ~~~~~~~~l~~~L~~~-g~~~~-~~~~~~~~~~~~~~~-~---------------~~~~~l~~~L~~~G-i~v~~~~~~~  380 (427)
T 2w8t_A          320 RLWSNARALHGGLKAM-GFRLG-TETCDSAIVAVMLED-Q---------------EQAAMMWQALLDGG-LYVNMARPPA  380 (427)
T ss_dssp             HHHHHHHHHHHHHHHH-TCEES-CSSCCSSEEEEEESS-H---------------HHHHHHHHHHHHTT-EECEEECTTT
T ss_pred             HHHHHHHHHHHHHHHc-CCccc-CCCCCCCEEEEEECC-H---------------HHHHHHHHHHHHCC-eEEeeeCCCC
Confidence            8999999999999998 88875 355 55666665421 0               01347889999998 5555443322


Q ss_pred             c-ccccEEEEEecCCCCCCHHHHHHHHHHHHHHHHHhH
Q psy14299        401 R-NLHNFFRLVTTCHPASSRQDMDYAIDQIELRGAEVD  437 (448)
Q Consensus       401 ~-~~~~~lRis~~~~~~~t~edid~l~~al~~~~~~~~  437 (448)
                      . ...+++|+++  +.++|++|+++++++|+++.+++.
T Consensus       381 ~~~~~~~lRi~~--~~~~t~e~i~~~~~~l~~~l~~~~  416 (427)
T 2w8t_A          381 TPAGTFLLRCSI--CAEHTPAQIQTVLGMFQAAGRAVG  416 (427)
T ss_dssp             SCTTCEEEEEEC--CTTCCHHHHHHHHHHHHHHHHHHT
T ss_pred             CCCCCeEEEEEe--CCCCCHHHHHHHHHHHHHHHHHhC
Confidence            1 1136999999  678999999999999999987654

>1svv_A Threonine aldolase; structural genomics, structural genomics of pathogenic proto SGPP, protein structure initiative, PSI; 2.10A {Leishmania major} SCOP: c.67.1.1

Probab=99.90  E-value=1.6e-22  Score=200.49  Aligned_cols=280  Identities=14%  Similarity=0.144  Sum_probs=188.7

Q ss_pred             cEEEeCcHHHHHHHHHHHHHHhcCCcccccCCCCCCCeEEEecCCCchHHHH--HHHHhCCCCCcEEEEecCCCCCcCHH
Q psy14299          4 KPFLLPGGSISNMYSICLARYRLDPDTKRKGLSHLPPLCMFTSEDSHYSMLK--AAHWLGIGMDNVIRVKTNERGQMICS   81 (448)
Q Consensus         4 ~g~~t~ggT~an~~al~~a~~~~~~~~~~~G~~~~~~~~Vl~~~~~H~s~~~--~~~~~g~~~~~v~~v~~~~~g~id~e   81 (448)
                      .+++|+|||+++..++.+++.              +++.|+++..+|+++..  .++..|.   +++.+|.+ ++.+|++
T Consensus        68 ~v~~~~g~t~a~~~~~~~~~~--------------~gd~vl~~~~~~~~~~~~~~~~~~g~---~~~~v~~~-~~~~d~~  129 (359)
T 1svv_A           68 DVHFISGGTQTNLIACSLALR--------------PWEAVIATQLGHISTHETGAIEATGH---KVVTAPCP-DGKLRVA  129 (359)
T ss_dssp             EEEEESCHHHHHHHHHHHHCC--------------TTEEEEEETTSHHHHSSTTHHHHTTC---CEEEECCT-TSCCCHH
T ss_pred             cEEEeCCchHHHHHHHHHHhC--------------CCCEEEEcccchHHHHHHHHHhcCCC---eeEEEeCC-CCeecHH
Confidence            478999999999999887643              56789999999999988  4777788   78899986 7899999


Q ss_pred             HHHHHHHHhh-hcCCCcEEEEEeccCCccccccC---HHHHHHHHHHcCCEEEEeccccc---ccccccchhhhhcCCCC
Q psy14299         82 FLEQTIQTSL-AEKKIPLFVNATAGTTVLGAFDP---LDEIATVCEKYDLWMHVDACWGG---SLIFSEKYSFVLKGINR  154 (448)
Q Consensus        82 ~Le~~l~~~~-~~~~~~~lVv~~~~~t~tG~~~~---l~~I~~ia~~~g~~l~VD~A~~~---~~~~~~~~~~~~~~~~~  154 (448)
                      +|++.+++.. ..+.++++|+++++ |++|.+.|   +++|.++|++||+++|+|++|..   +....+.....+.  ..
T Consensus       130 ~l~~~l~~~~~~~~~~~~~v~~~~~-~ptG~~~~~~~l~~i~~~~~~~~~~li~De~~~~~~~~~~~~~~~~~~~~--~~  206 (359)
T 1svv_A          130 DIESALHENRSEHMVIPKLVYISNT-TEVGTQYTKQELEDISASCKEHGLYLFLDGARLASALSSPVNDLTLADIA--RL  206 (359)
T ss_dssp             HHHHHHHHSCSTTSCEEEEEEEESS-CTTSCCCCHHHHHHHHHHHHHHTCEEEEECTTHHHHHTSTTCCCCHHHHH--HH
T ss_pred             HHHHHHHHHHhccCCCceEEEEEcC-CCCceecCHHHHHHHHHHHHHhCCEEEEEccchhhhhcCCCcchhhhhhh--hc
Confidence            9999997631 12234789999988 68999988   99999999999999999999832   3222211110000  14


Q ss_pred             ccEEEECCccccCCCCceEEEEEeccchhhhhccCCcccccccCcccccccCCCCCcccCCCCchhHHHHHHHHHhChHH
Q psy14299        155 ANSVSWNPHKMLGAPLQCSILLIKEKGLLHQANATAATYLFQQDKFYDVSFDTGDKSVQCGRKVDAFKLWLMWKARGNLG  234 (448)
Q Consensus       155 aD~~~~s~hK~l~~P~g~G~l~vr~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~g  234 (448)
                      +|++++++||+ ++|.|+|+++++++ +......    +.....           .....  .   ..           .
T Consensus       207 ~d~~~~s~~K~-g~~~~~g~l~~~~~-~~~~~~~----~~~~~~-----------~~~~~--~---~~-----------~  253 (359)
T 1svv_A          207 TDMFYIGATKA-GGMFGEALIILNDA-LKPNARH----LIKQRG-----------ALMAK--G---WL-----------L  253 (359)
T ss_dssp             CSEEEEECTTT-TCSSCEEEEECSGG-GCTTHHH----HHHHTT-----------CCCTT--T---HH-----------H
T ss_pred             CCEEEEecccC-CCCCceEEEEEccc-HHHHHHH----HHhcCC-----------ccccc--c---hh-----------h
Confidence            69999999998 56889999888543 3222211    000000           00000  0   00           0


Q ss_pred             HHHHHHHhhhhccCCCccchhhhhhhhhhhhhhhhhhhhhhhccccccccccCCCCCccccccchhhHHHHHHHHHhcCc
Q psy14299        235 FRHFVDNAVDCSRGSMTFSTLLCFDLQGLLHQANATAATYLFQQDKFYDVSFDTGDKSVQCGRKVDAFKLWLMWKARGNL  314 (448)
Q Consensus       235 ~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  314 (448)
                                                                                        ...+   ...+..+
T Consensus       254 ------------------------------------------------------------------~~~~---~~~l~~~  264 (359)
T 1svv_A          254 ------------------------------------------------------------------GIQF---EVLMKDN  264 (359)
T ss_dssp             ------------------------------------------------------------------HHHH---HHHTSTT
T ss_pred             ------------------------------------------------------------------HHHH---HHHHhhh
Confidence                                                                              0000   0123335


Q ss_pred             cHHHHHHHHHHHHHHHHHHhhcCCCeEEeccCCceeeEEEEeeccCCCccccchhhhhhhhhhhHHHHHHHHhC-CcEEE
Q psy14299        315 GFRHFVDNAVDCSRYFLSQISQRPGFRLVIPEFQCTNICFWFIPVSLRDKVEDETWWSTLSKVAPRIKEKLVLG-GTLMI  393 (448)
Q Consensus       315 G~~~~~~~~~~l~~~~~~~L~~~pg~~l~~~~~~~~~v~f~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~L~~~-g~~~~  393 (448)
                      +++++.++..++++++.+.| +.+|++++ .+.....+.+.+ +                    .++.+.|.++ |+.+ 
T Consensus       265 ~~~~~~~~~~~~~~~l~~~L-~~~~~~~~-~~~~~~~~~~~~-~--------------------~~~~~~l~~~~gi~v-  320 (359)
T 1svv_A          265 LFFELGAHSNKMAAILKAGL-EACGIRLA-WPSASNQLFPIL-E--------------------NTMIAELNNDFDMYT-  320 (359)
T ss_dssp             HHHHHHHHHHHHHHHHHHHH-HHTTCCBS-SCCSSSEECBEE-E--------------------HHHHHHHTTTEECEE-
T ss_pred             hHHHHHHHHHHHHHHHHHHh-ccCCeEEc-cCCccceEEEEc-C--------------------HHHHHHHHHhcCEEE-
Confidence            67778888999999999999 56798875 443333332221 1                    2678889988 8554 


Q ss_pred             EeeecCCcccccEEEEEecCCCCCCHHHHHHHHHHHHHHHHH
Q psy14299        394 GYQPLQHRNLHNFFRLVTTCHPASSRQDMDYAIDQIELRGAE  435 (448)
Q Consensus       394 ~~~~~~g~~~~~~lRis~~~~~~~t~edid~l~~al~~~~~~  435 (448)
                      .+....+.   +++|+++  +..++++|+++++++|+++.++
T Consensus       321 ~~~~~~~~---~~iRi~~--~~~~~~~~i~~~~~~l~~~~~~  357 (359)
T 1svv_A          321 VEPLKDGT---CIMRLCT--SWATEEKECHRFVEVLKRLVAS  357 (359)
T ss_dssp             EEEETTTE---EEEEEEC--CTTCCHHHHHHHHHHHHHC---
T ss_pred             EecccCCC---ceEEEEc--cCcCCHHHHHHHHHHHHHHHhc
Confidence            22222233   7999998  7889999999999999987654

>2fnu_A Aminotransferase; protein-product complex, structural genomics, montreal-kings bacterial structural genomics initiative, BSGI; HET: PMP UD1; 1.50A {Helicobacter pylori} SCOP: c.67.1.4 PDB: 2fni_A* 2fn6_A*

Probab=99.90  E-value=1.4e-22  Score=202.49  Aligned_cols=300  Identities=10%  Similarity=0.012  Sum_probs=194.1

Q ss_pred             cEEEeCcHHHHHHHHHHHHHHhcCCcccccCCCCCCCeEEEecCCCchHHHHHHHHhCCCCCcEEEEecCCCCCcCHHHH
Q psy14299          4 KPFLLPGGSISNMYSICLARYRLDPDTKRKGLSHLPPLCMFTSEDSHYSMLKAAHWLGIGMDNVIRVKTNERGQMICSFL   83 (448)
Q Consensus         4 ~g~~t~ggT~an~~al~~a~~~~~~~~~~~G~~~~~~~~Vl~~~~~H~s~~~~~~~~g~~~~~v~~v~~~~~g~id~e~L   83 (448)
                      .+++|+|||+++..++.+++...           .+++.|+++..+|+++..+++..|.   +++.++.++++.+|+++|
T Consensus        49 ~v~~~~ggt~al~~~~~~~~~~~-----------~~gd~Vl~~~~~~~~~~~~~~~~g~---~~~~~~~~~~~~~d~~~l  114 (375)
T 2fnu_A           49 HALVFNSATSALLTLYRNFSEFS-----------ADRNEIITTPISFVATANMLLESGY---TPVFAGIKNDGNIDELAL  114 (375)
T ss_dssp             EEEEESCHHHHHHHHHHHSSCCC-----------TTSCEEEECSSSCTHHHHHHHHTTC---EEEECCBCTTSSBCGGGS
T ss_pred             eEEEeCCHHHHHHHHHHHhcccC-----------CCCCEEEECCCccHhHHHHHHHCCC---EEEEeccCCCCCCCHHHH
Confidence            57999999999998887763101           2567899999999999999999888   788999988889999999


Q ss_pred             HHHHHHhhhcCCCcEEEEEeccCCccccccCHHHHHHHHHHcCCEEEEecccccccccccchhhhhcCCCCccEEEECCc
Q psy14299         84 EQTIQTSLAEKKIPLFVNATAGTTVLGAFDPLDEIATVCEKYDLWMHVDACWGGSLIFSEKYSFVLKGINRANSVSWNPH  163 (448)
Q Consensus        84 e~~l~~~~~~~~~~~lVv~~~~~t~tG~~~~l~~I~~ia~~~g~~l~VD~A~~~~~~~~~~~~~~~~~~~~aD~~~~s~h  163 (448)
                      ++++++      ++++|+++++   +|.+.|+++|.++|++||+++|+|++|+.+......   .+.....+++.++++|
T Consensus       115 ~~~i~~------~~~~v~~~~~---tG~~~~l~~i~~l~~~~~~~li~D~a~~~~~~~~~~---~~~~~~~i~~~s~s~~  182 (375)
T 2fnu_A          115 EKLINE------RTKAIVSVDY---AGKSVEVESVQKLCKKHSLSFLSDSSHALGSEYQNK---KVGGFALASVFSFHAI  182 (375)
T ss_dssp             GGGCCT------TEEEEEEECG---GGCCCCHHHHHHHHHHHTCEEEEECTTCTTCEETTE---ETTSSSSEEEEECCTT
T ss_pred             HhhcCc------CceEEEEeCC---cCCccCHHHHHHHHHHcCCEEEEECccccCCeECCe---eccccCCeEEEeCCCC
Confidence            988854      4778777776   899999999999999999999999999987654221   1111223566677888


Q ss_pred             cccCCCCceEEEEEec-cchhhhhccCCcccccccCcccccccCCCCCcccCCCCchhHHHHHHHHHhChHHHHHHHHHh
Q psy14299        164 KMLGAPLQCSILLIKE-KGLLHQANATAATYLFQQDKFYDVSFDTGDKSVQCGRKVDAFKLWLMWKARGNLGFRHFVDNA  242 (448)
Q Consensus       164 K~l~~P~g~G~l~vr~-~~~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~g~~~~i~~~  242 (448)
                      |++ +| |.|++++++ +++......... .... .. ....+.....    +..+.                       
T Consensus       183 K~~-~~-g~g~~~~~~~~~~~~~~~~~~~-~~~~-~~-~~~~~~~~~~----~~~~~-----------------------  230 (375)
T 2fnu_A          183 KPI-TT-AEGGAVVTNDSELHEKMKLFRS-HGML-KK-DFFEGEVKSI----GHNFR-----------------------  230 (375)
T ss_dssp             SSS-CC-SSCEEEEESCHHHHHHHHHHTB-TTEE-ES-SSSCEEESSC----CCBCC-----------------------
T ss_pred             CCc-cc-cCceEEEeCCHHHHHHHHHHHh-cCCc-cc-cccccccccc----cccCC-----------------------
Confidence            998 45 788888853 443332211000 0000 00 0000000000    00000                       


Q ss_pred             hhhccCCCccchhhhhhhhhhhhhhhhhhhhhhhccccccccccCCCCCccccccchhhHHHHHHHHHhcCccHHHHHHH
Q psy14299        243 VDCSRGSMTFSTLLCFDLQGLLHQANATAATYLFQQDKFYDVSFDTGDKSVQCGRKVDAFKLWLMWKARGNLGFRHFVDN  322 (448)
Q Consensus       243 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~  322 (448)
                                                                              ...+...  +.....++++++.++
T Consensus       231 --------------------------------------------------------~~~~~~a--~~~~~~~~~~~~~~~  252 (375)
T 2fnu_A          231 --------------------------------------------------------LNEIQSA--LGLSQLKKAPFLMQK  252 (375)
T ss_dssp             --------------------------------------------------------CCHHHHH--HHHHHHTTHHHHHHH
T ss_pred             --------------------------------------------------------CCHHHHH--HHHHHHHHHHHHHHH
Confidence                                                                    0001111  111123567778888


Q ss_pred             HHHHHHHHHHHhhcCCCeEEeccCC---ce--eeEEEEeeccCCCccccchhhhhhhhhhhHHHHHHHHhCCcEEEEeee
Q psy14299        323 AVDCSRYFLSQISQRPGFRLVIPEF---QC--TNICFWFIPVSLRDKVEDETWWSTLSKVAPRIKEKLVLGGTLMIGYQP  397 (448)
Q Consensus       323 ~~~l~~~~~~~L~~~pg~~l~~~~~---~~--~~v~f~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~L~~~g~~~~~~~~  397 (448)
                      ..++++++.+.|+++||+++. .++   ..  ..+.+.+.+.+..              ...++.+.|.++| +.+....
T Consensus       253 ~~~~~~~l~~~L~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~--------------~~~~l~~~L~~~g-i~v~~~~  316 (375)
T 2fnu_A          253 REEAALTYDRIFKDNPYFTPL-HPLLKDKSSNHLYPILMHQKFFT--------------CKKLILESLHKRG-ILAQVHY  316 (375)
T ss_dssp             HHHHHHHHHHHHTTCSSEEES-GGGCSSCCCCSCEEEEECGGGGG--------------GHHHHHHHHHHTT-EECBCCC
T ss_pred             HHHHHHHHHHHhhcCCCcccc-CCCCCCCcceEEEEEEeCccccc--------------hHHHHHHHHHHCC-CCccccc
Confidence            999999999999999999986 321   12  2233433211110              1237888898888 4444111


Q ss_pred             cCCc-------------c------cccEEEEEecCCCCCCHHHHHHHHHHHHHHHHHhH
Q psy14299        398 LQHR-------------N------LHNFFRLVTTCHPASSRQDMDYAIDQIELRGAEVD  437 (448)
Q Consensus       398 ~~g~-------------~------~~~~lRis~~~~~~~t~edid~l~~al~~~~~~~~  437 (448)
                      ..+.             .      ..+++|+++  +.++|++|+++++++|+++.++++
T Consensus       317 ~p~~~~~~~~~~~~~~~~~~~~~~~~~~lRi~~--~~~~t~~~i~~~~~~l~~~~~~~~  373 (375)
T 2fnu_A          317 KPIYQYQLYQQLFNTAPLKSAEDFYHAEISLPC--HANLNLESVQNIAHSVLKTFESFK  373 (375)
T ss_dssp             CCGGGSHHHHHHHCCCCCHHHHHHHHHEEEECC--CTTCCHHHHHHHHHHHHHHHHHHC
T ss_pred             cccccchhhhcCCCccCChHHHHHHhCEEEecC--CCCCCHHHHHHHHHHHHHHHHHhc
Confidence            0000             0      126899999  789999999999999999887653

>1wyu_A Glycine dehydrogenase (decarboxylating) subunit 1; alpha(2)beta(2) tetramer, riken structural genomics/proteomi initiative, RSGI; HET: PLP; 2.10A {Thermus thermophilus} SCOP: c.67.1.7 PDB: 1wyt_A* 1wyv_A*

Probab=99.90  E-value=2.1e-22  Score=206.99  Aligned_cols=296  Identities=12%  Similarity=0.092  Sum_probs=188.7

Q ss_pred             EEEeCcHHHHHHHHHHHHHHhcCCcccccCCCCCCCeEEEecCCCchHHHHHHH----HhCCCCCcEEEEecCCCCCcCH
Q psy14299          5 PFLLPGGSISNMYSICLARYRLDPDTKRKGLSHLPPLCMFTSEDSHYSMLKAAH----WLGIGMDNVIRVKTNERGQMIC   80 (448)
Q Consensus         5 g~~t~ggT~an~~al~~a~~~~~~~~~~~G~~~~~~~~Vl~~~~~H~s~~~~~~----~~g~~~~~v~~v~~~~~g~id~   80 (448)
                      +++|+|+|.++..++.+.+..             +++.|+++..+|+++...++    ..|+   +++.++. +++.+|+
T Consensus       128 i~~~~g~taa~ea~~~a~~~~-------------~gd~Viv~~~~h~s~~~~~~~~a~~~G~---~v~~v~~-~~~~~d~  190 (438)
T 1wyu_A          128 ASMYDGATALAEGVLLALRET-------------GRMGVLVSQGVHPEYRAVLRAYLEAVGA---KLLTLPL-EGGRTPL  190 (438)
T ss_dssp             SCBSSHHHHHHHHHHHHHHHH-------------TCCEEEEETTSCHHHHHHHHHHHHHTTC---EEEEECC-BTTBCCC
T ss_pred             eEEeCcHHHHHHHHHHHHhcC-------------CCCEEEEcCccCHhHHHHHHHHHHHCCC---EEEEEcC-cCCccCH
Confidence            468999994432222222222             56679999999999886664    4677   7888887 5678887


Q ss_pred             HHHHHHHHHhhhcCCCcEEEEEeccCCccccccCHHHHHHHHHHcCCEEEEecc-cccccccccchhhhhcCCCCccEEE
Q psy14299         81 SFLEQTIQTSLAEKKIPLFVNATAGTTVLGAFDPLDEIATVCEKYDLWMHVDAC-WGGSLIFSEKYSFVLKGINRANSVS  159 (448)
Q Consensus        81 e~Le~~l~~~~~~~~~~~lVv~~~~~t~tG~~~~l~~I~~ia~~~g~~l~VD~A-~~~~~~~~~~~~~~~~~~~~aD~~~  159 (448)
                      ++    +.      .++++|+++++ |++|.+.|+++|+++||+||+++|||.. ++.+.+..+.   .    .++|+++
T Consensus       191 ~~----i~------~~t~~v~i~~p-n~tG~~~~l~~i~~la~~~g~~vivd~d~~a~g~~~~~~---~----~g~D~~~  252 (438)
T 1wyu_A          191 PE----VG------EEVGAVVVQNP-NFLGALEDLGPFAEAAHGAGALFVAVADPLSLGVLKPPG---A----YGADIAV  252 (438)
T ss_dssp             CC----CC------TTEEEEEEESS-CTTSBCCCHHHHHHHHHHTTCEEEEECCTTGGGTBCCHH---H----HTCSEEE
T ss_pred             HH----hC------CCeEEEEEECC-CCCeEEecHHHHHHHHHHcCCEEEEEechhhccCcCCCc---c----CCCCEEE
Confidence            76    42      25889999998 9999999999999999999999997754 4444432221   0    1479999


Q ss_pred             ECCcc-----ccCCCCceEEEEEeccchhhhhccCCcccccccCcccccccCCCCCcccCCCCchhHHHHHHHHHhChHH
Q psy14299        160 WNPHK-----MLGAPLQCSILLIKEKGLLHQANATAATYLFQQDKFYDVSFDTGDKSVQCGRKVDAFKLWLMWKARGNLG  234 (448)
Q Consensus       160 ~s~hK-----~l~~P~g~G~l~vr~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~g  234 (448)
                      +|+||     |+++| ++|+++++++ +....    +.++..........   ..+.+....+                 
T Consensus       253 ~s~kk~~~~~~~~Gp-~~G~l~~~~~-~~~~l----~~~~~g~~~~~~~~---~~~~~~l~~~-----------------  306 (438)
T 1wyu_A          253 GDGQSLGLPMGFGGP-HFGFLATKKA-FVRQL----PGRLVSETVDVEGR---RGFILTLQAR-----------------  306 (438)
T ss_dssp             EECTTTTCCCGGGCS-CCEEEEECGG-GGGGC----CSCCEEEEEBTTSC---EEEEECCGGG-----------------
T ss_pred             ECCcccCCCccCCCC-CeeEEEEcHH-HHHhC----CCceeccccccCCC---cceeeecccc-----------------
Confidence            99888     78889 9999998764 33321    22221110000000   0000000000                 


Q ss_pred             HHHHHHHhhhhccCCCccchhhhhhhhhhhhhhhhhhhhhhhccccccccccCCCCCcccccc-chhhHHHHHHHHHhcC
Q psy14299        235 FRHFVDNAVDCSRGSMTFSTLLCFDLQGLLHQANATAATYLFQQDKFYDVSFDTGDKSVQCGR-KVDAFKLWLMWKARGN  313 (448)
Q Consensus       235 ~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~  313 (448)
                       ...+    +..+...++                                          |+. ....+..+..+...+.
T Consensus       307 -~~~~----r~~~~t~~~------------------------------------------~~~~~~~a~~aa~~l~~~~~  339 (438)
T 1wyu_A          307 -EQYI----RRAKAKSNI------------------------------------------TTNAQLTALMGAMYLAALGP  339 (438)
T ss_dssp             -SHHH----HGGGSSCCC------------------------------------------CSCCHHHHHHHHHHHHHHHH
T ss_pred             -cccc----chhcccCCc------------------------------------------cchHHHHHHHHHHHHHHhCH
Confidence             0000    000011111                                          111 1112223344777788


Q ss_pred             ccHHHHHHHHHHHHHHHHHHhhcCCCeEEeccC-CceeeEEEEeeccCCCccccchhhhhhhhhhhHHHHHHHHhCCcEE
Q psy14299        314 LGFRHFVDNAVDCSRYFLSQISQRPGFRLVIPE-FQCTNICFWFIPVSLRDKVEDETWWSTLSKVAPRIKEKLVLGGTLM  392 (448)
Q Consensus       314 ~G~~~~~~~~~~l~~~~~~~L~~~pg~~l~~~~-~~~~~v~f~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~L~~~g~~~  392 (448)
                      +|++++.++..++++++.+.|+++||++++ .+ +....+.|.. +  ..               ..++.+.|.++|+.+
T Consensus       340 ~g~~~~~~~~~~~~~~l~~~L~~~~g~~~~-~~~~~~~~~~~~~-~--~~---------------~~~~~~~L~~~gi~v  400 (438)
T 1wyu_A          340 EGLREVALKSVEMAHKLHALLLEVPGVRPF-TPKPFFNEFALAL-P--KD---------------PEAVRRALAERGFHG  400 (438)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHTTSTTCEEC-SCSSBCSEEEEEC-S--SC---------------HHHHHHHHHHTTCCC
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhcCCCeEEC-CCCCeEEEEEEeC-C--CC---------------HHHHHHHHHHCCcee
Confidence            899999999999999999999999999987 43 3344445532 1  11               237889999998443


Q ss_pred             -EEeeecCCcccccEEEEEecCCCCCCHHHHHHHHHHHHHH
Q psy14299        393 -IGYQPLQHRNLHNFFRLVTTCHPASSRQDMDYAIDQIELR  432 (448)
Q Consensus       393 -~~~~~~~g~~~~~~lRis~~~~~~~t~edid~l~~al~~~  432 (448)
                       +.++...+   ++++|+|+  ++++|++|+++++++|+++
T Consensus       401 ~~~~~~~~~---~~~lRis~--~~~~t~edi~~~~~~l~~~  436 (438)
T 1wyu_A          401 ATPVPREYG---ENLALFAA--TELHEEEDLLALREALKEV  436 (438)
T ss_dssp             CEECCTTSC---SSEEEEEC--CTTCCHHHHHHHHHHHHHH
T ss_pred             ccccccccC---CCeEEEEe--cccCCHHHHHHHHHHHHHH
Confidence             13333222   37999999  6899999999999999876

>1fc4_A 2-amino-3-ketobutyrate conenzyme A ligase; 2-amino-3-ketobutyrate COA ligase, pyridoxal phosphate, COEN transferase, structural genomics; HET: PLP; 2.00A {Escherichia coli} SCOP: c.67.1.4

Probab=99.89  E-value=1.5e-21  Score=197.47  Aligned_cols=288  Identities=14%  Similarity=0.100  Sum_probs=195.0

Q ss_pred             cEEEeCcHHHHHHHHHHHHHHhcCCcccccCCCCCCCeEEEecCCCchHHHHHHHHhCCCCCcEEEEecCCCCCcCHHHH
Q psy14299          4 KPFLLPGGSISNMYSICLARYRLDPDTKRKGLSHLPPLCMFTSEDSHYSMLKAAHWLGIGMDNVIRVKTNERGQMICSFL   83 (448)
Q Consensus         4 ~g~~t~ggT~an~~al~~a~~~~~~~~~~~G~~~~~~~~Vl~~~~~H~s~~~~~~~~g~~~~~v~~v~~~~~g~id~e~L   83 (448)
                      ..+++++||+++..++.++..              +++.|+++...|.++..+++..|.   +++.++.     +|+++|
T Consensus       107 ~~i~~~sGs~a~~~~~~~~~~--------------~gd~v~~~~~~~~~~~~~~~~~g~---~~~~~~~-----~d~~~l  164 (401)
T 1fc4_A          107 DAILYSSCFDANGGLFETLLG--------------AEDAIISDALNHASIIDGVRLCKA---KRYRYAN-----NDMQEL  164 (401)
T ss_dssp             EEEEESCHHHHHHTTHHHHCC--------------TTCEEEEETTCCHHHHHHHHTSCS---EEEEECT-----TCHHHH
T ss_pred             cEEEeCChHHHHHHHHHHHcC--------------CCCEEEEcchhHHHHHHHHHHcCC---ceEEECC-----CCHHHH
Confidence            457888899998887766532              567899999999999998887777   6777763     489999


Q ss_pred             HHHHHHhhhcCCCcEEEEEeccCCccccccCHHHHHHHHHHcCCEEEEecccccccc-cccchhhhhcCC-CCccEEEEC
Q psy14299         84 EQTIQTSLAEKKIPLFVNATAGTTVLGAFDPLDEIATVCEKYDLWMHVDACWGGSLI-FSEKYSFVLKGI-NRANSVSWN  161 (448)
Q Consensus        84 e~~l~~~~~~~~~~~lVv~~~~~t~tG~~~~l~~I~~ia~~~g~~l~VD~A~~~~~~-~~~~~~~~~~~~-~~aD~~~~s  161 (448)
                      ++.+++..+.+.++++|++++++|++|.+.|+++|.++|++||+++++|++|+.+.. ..........++ ...|+++.+
T Consensus       165 ~~~l~~~~~~~~~~~~v~~~~~~nptG~~~~~~~i~~l~~~~~~~li~De~~~~g~~~~~g~~~~~~~~~~~~~di~~~s  244 (401)
T 1fc4_A          165 EARLKEAREAGARHVLIATDGVFSMDGVIANLKGVCDLADKYDALVMVDDSHAVGFVGENGRGSHEYCDVMGRVDIITGT  244 (401)
T ss_dssp             HHHHHHHHHTTCSSEEEEEESEETTTTEECCHHHHHHHHHHTTEEEEEECTTTTTTSSTTSCCHHHHTTCTTCCSEEEEE
T ss_pred             HHHHHHhhccCCCceEEEEeCCcCCCCCCCCHHHHHHHHHHcCCEEEEECcccccccCCCCCccHHHcCCCcCCcEEEec
Confidence            999976433333588999999999999999999999999999999999999975543 111100111122 246899999


Q ss_pred             CccccCCCCceEEEEEeccchhhhhccCCcccccccCcccccccCCCCCcccCCCCchhHHHHHHHHHhChHHHHHHHHH
Q psy14299        162 PHKMLGAPLQCSILLIKEKGLLHQANATAATYLFQQDKFYDVSFDTGDKSVQCGRKVDAFKLWLMWKARGNLGFRHFVDN  241 (448)
Q Consensus       162 ~hK~l~~P~g~G~l~vr~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~g~~~~i~~  241 (448)
                      +||+++++.| |+++.+ +++.........++....                                            
T Consensus       245 ~sK~~~~~~g-G~~~~~-~~~~~~l~~~~~~~~~~~--------------------------------------------  278 (401)
T 1fc4_A          245 LGKALGGASG-GYTAAR-KEVVEWLRQRSRPYLFSN--------------------------------------------  278 (401)
T ss_dssp             SSSTTCSSSC-EEEEEC-HHHHHHHHHHCHHHHHSC--------------------------------------------
T ss_pred             chhhccCCCC-EEEEcC-HHHHHHHHHhCcCceeCC--------------------------------------------
Confidence            9999966666 887774 444333221111111000                                            


Q ss_pred             hhhhccCCCccchhhhhhhhhhhhhhhhhhhhhhhccccccccccCCCCCccccccchhhHHHHHHHHHhcCccHHHHHH
Q psy14299        242 AVDCSRGSMTFSTLLCFDLQGLLHQANATAATYLFQQDKFYDVSFDTGDKSVQCGRKVDAFKLWLMWKARGNLGFRHFVD  321 (448)
Q Consensus       242 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~  321 (448)
                                                                           +.+.+.+..+..+++....  .+++.+
T Consensus       279 -----------------------------------------------------~~~~~~~~a~~~~l~~~~~--~~~~~~  303 (401)
T 1fc4_A          279 -----------------------------------------------------SLAPAIVAASIKVLEMVEA--GSELRD  303 (401)
T ss_dssp             -----------------------------------------------------CCCHHHHHHHHHHHHHHHT--CHHHHH
T ss_pred             -----------------------------------------------------CCCHHHHHHHHHHHHHHhc--CHHHHH
Confidence                                                                 0001111222223333322  366778


Q ss_pred             HHHHHHHHHHHHhhcCCCeEEeccCCceeeEEEEeeccCCCccccchhhhhhhhhhhHHHHHHHHhCCcEEEEeeecCCc
Q psy14299        322 NAVDCSRYFLSQISQRPGFRLVIPEFQCTNICFWFIPVSLRDKVEDETWWSTLSKVAPRIKEKLVLGGTLMIGYQPLQHR  401 (448)
Q Consensus       322 ~~~~l~~~~~~~L~~~pg~~l~~~~~~~~~v~f~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~L~~~g~~~~~~~~~~g~  401 (448)
                      +..++++++.+.|+++ |++++  ++..+++.+.+. ...               ...++.+.|.++| +.+.+....+.
T Consensus       304 ~~~~~~~~l~~~L~~~-g~~~~--~~~~~~~~~~~~-~~~---------------~~~~l~~~l~~~g-i~v~~~~~~~~  363 (401)
T 1fc4_A          304 RLWANARQFREQMSAA-GFTLA--GADHAIIPVMLG-DAV---------------VAQKFARELQKEG-IYVTGFFYPVV  363 (401)
T ss_dssp             HHHHHHHHHHHHHHHT-TCCBC--CSSSSEEEEEEE-CHH---------------HHHHHHHHHHHTT-EECCEECTTSS
T ss_pred             HHHHHHHHHHHHHHHc-CCccc--CCCCCEEEEEcC-ChH---------------HHHHHHHHHHHCC-cEEeeecCCCC
Confidence            8889999999999998 88775  345555555442 110               1236888999998 55554433221


Q ss_pred             -ccccEEEEEecCCCCCCHHHHHHHHHHHHHHHHHh
Q psy14299        402 -NLHNFFRLVTTCHPASSRQDMDYAIDQIELRGAEV  436 (448)
Q Consensus       402 -~~~~~lRis~~~~~~~t~edid~l~~al~~~~~~~  436 (448)
                       ...+++|+++  +.+++++|+++++++|+++.+++
T Consensus       364 ~~~~~~iRi~~--~~~~~~~~i~~~~~~l~~~~~~~  397 (401)
T 1fc4_A          364 PKGQARIRTQM--SAAHTPEQITRAVEAFTRIGKQL  397 (401)
T ss_dssp             CTTCEEEEEEC--CTTCCHHHHHHHHHHHHHHHHHT
T ss_pred             CCCCceEEEEe--CCCCCHHHHHHHHHHHHHHHHHh
Confidence             1136899999  67899999999999999988765

>3nra_A Aspartate aminotransferase; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: LLP; 2.15A {Rhodobacter sphaeroides}

Probab=99.89  E-value=9.7e-22  Score=198.85  Aligned_cols=287  Identities=10%  Similarity=0.065  Sum_probs=192.9

Q ss_pred             cEEEeCcHHHHHHHHHHHHHHhcCCcccccCCCCCCCeEEEecCCCchHHHHHHHHhCCCCCcEEEEec------CCCCC
Q psy14299          4 KPFLLPGGSISNMYSICLARYRLDPDTKRKGLSHLPPLCMFTSEDSHYSMLKAAHWLGIGMDNVIRVKT------NERGQ   77 (448)
Q Consensus         4 ~g~~t~ggT~an~~al~~a~~~~~~~~~~~G~~~~~~~~Vl~~~~~H~s~~~~~~~~g~~~~~v~~v~~------~~~g~   77 (448)
                      ..++|+|||+++..++.++..              +++.|+++...|.++...++..|.   +++.+|.      ++++.
T Consensus       104 ~i~~~~g~~~a~~~~~~~l~~--------------~gd~vl~~~~~~~~~~~~~~~~g~---~~~~~~~~~~~~~~~~~~  166 (407)
T 3nra_A          104 GLIITPGTQGALFLAVAATVA--------------RGDKVAIVQPDYFANRKLVEFFEG---EMVPVQLDYVSADETRAG  166 (407)
T ss_dssp             SEEEESHHHHHHHHHHHTTCC--------------TTCEEEEEESCCTHHHHHHHHTTC---EEEEEEBCCCSSCCSSCC
T ss_pred             cEEEeCCcHHHHHHHHHHhCC--------------CCCEEEEcCCcccchHHHHHHcCC---EEEEeecccccccCcCCC
Confidence            689999999999888765432              567899999999999999999998   7889998      46788


Q ss_pred             cCHHHHHHHHHHhhhcCCCcEEEEEeccCCccccccC---HHHHHHHHHHcCCEEEEecccccccccccchhhh--hc-C
Q psy14299         78 MICSFLEQTIQTSLAEKKIPLFVNATAGTTVLGAFDP---LDEIATVCEKYDLWMHVDACWGGSLIFSEKYSFV--LK-G  151 (448)
Q Consensus        78 id~e~Le~~l~~~~~~~~~~~lVv~~~~~t~tG~~~~---l~~I~~ia~~~g~~l~VD~A~~~~~~~~~~~~~~--~~-~  151 (448)
                      +|+++|++++++      ++++|++++++|++|.+.|   +++|+++|++||+++++|++|+.+..........  +. .
T Consensus       167 ~d~~~l~~~l~~------~~~~v~~~~p~nptG~~~~~~~l~~i~~~~~~~~~~li~Dea~~~~~~~g~~~~~~~~~~~~  240 (407)
T 3nra_A          167 LDLTGLEEAFKA------GARVFLFSNPNNPAGVVYSAEEIGQIAALAARYGATVIADQLYSRLRYAGASYTHLRAEAAV  240 (407)
T ss_dssp             BCHHHHHHHHHT------TCCEEEEESSCTTTCCCCCHHHHHHHHHHHHHHTCEEEEECTTTTSBCTTCCCCCGGGCTTS
T ss_pred             cCHHHHHHHHhh------CCcEEEEcCCCCCCCcccCHHHHHHHHHHHHHcCCEEEEEccccccccCCCCCCChhhcCcc
Confidence            999999999975      4778999999999999988   9999999999999999999998755421111000  00 1


Q ss_pred             CCCccEEEECCccccCCC-CceEEEEEeccchhhhhccCCcccccccCcccccccCCCCCcccCCCCchhHHHHHHHHHh
Q psy14299        152 INRANSVSWNPHKMLGAP-LQCSILLIKEKGLLHQANATAATYLFQQDKFYDVSFDTGDKSVQCGRKVDAFKLWLMWKAR  230 (448)
Q Consensus       152 ~~~aD~~~~s~hK~l~~P-~g~G~l~vr~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  230 (448)
                      ....++++.+++|+++.| ..+|+++.+ +.+..........+....                   .             
T Consensus       241 ~~~~~i~~~s~sK~~g~~G~r~G~~~~~-~~~~~~l~~~~~~~~~~~-------------------~-------------  287 (407)
T 3nra_A          241 DAENVVTIMGPSKTESLSGYRLGVAFGS-RAIIARMEKLQAIVSLRA-------------------A-------------  287 (407)
T ss_dssp             CGGGEEEEECSSSTTCCGGGCCEEEEEC-HHHHHHHHHHHHHHTSSS-------------------C-------------
T ss_pred             cCCcEEEEeCcccccCCCeeeEEEEEcC-HHHHHHHHHHHhhhccCC-------------------C-------------
Confidence            123568889999999844 456777664 333332211000000000                   0             


Q ss_pred             ChHHHHHHHHHhhhhccCCCccchhhhhhhhhhhhhhhhhhhhhhhccccccccccCCCCCccccccchhhHHHHHHHHH
Q psy14299        231 GNLGFRHFVDNAVDCSRGSMTFSTLLCFDLQGLLHQANATAATYLFQQDKFYDVSFDTGDKSVQCGRKVDAFKLWLMWKA  310 (448)
Q Consensus       231 g~~g~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  310 (448)
                         .+..                                                                ..+..+++ 
T Consensus       288 ---~~~~----------------------------------------------------------------~a~~~~l~-  299 (407)
T 3nra_A          288 ---GYSQ----------------------------------------------------------------AVLRGWFD-  299 (407)
T ss_dssp             ---HHHH----------------------------------------------------------------GGGGGTTC-
T ss_pred             ---hHHH----------------------------------------------------------------HHHHHHHh-
Confidence               0000                                                                00000000 


Q ss_pred             hcCccHHHHHHHHHHHHHHHHHHhhcCCCeEEeccCCceeeEEEEeecc-CCCccccchhhhhhhhhhhHHHHHHHHh-C
Q psy14299        311 RGNLGFRHFVDNAVDCSRYFLSQISQRPGFRLVIPEFQCTNICFWFIPV-SLRDKVEDETWWSTLSKVAPRIKEKLVL-G  388 (448)
Q Consensus       311 ~~~~G~~~~~~~~~~l~~~~~~~L~~~pg~~l~~~~~~~~~v~f~~~~~-~~~~~~~~~~~~~~~~~~~~~i~~~L~~-~  388 (448)
                      .....++++.++..++++++.+.|+++|+++++ . +..+.+.+...+. +.+               ..++.+.|.+ .
T Consensus       300 ~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~-~-~~~~~~~~~~~~~~~~~---------------~~~~~~~l~~~~  362 (407)
T 3nra_A          300 EAPGWMEDRIARHQAIRDELLHVLRGCEGVFAR-T-PQAGSYLFPRLPKLAVA---------------PAEFVKILRLQA  362 (407)
T ss_dssp             CCTTHHHHHHHHHHHHHHHHHHHHHTSTTCBCC-C-CSBSSEECCBCCCBSSC---------------HHHHHHHHHHHH
T ss_pred             ccchHHHHHHHHHHHHHHHHHHHHhcCCCceec-c-CCeeEEEEEeCCCCCCC---------------HHHHHHHHHHhC
Confidence            112446777888889999999999999998875 3 3333333311121 111               2367888876 4


Q ss_pred             CcEEEEeeecCCcccccEEEEEecCCCCCCHHHHHHHHHHHHHHHHHh
Q psy14299        389 GTLMIGYQPLQHRNLHNFFRLVTTCHPASSRQDMDYAIDQIELRGAEV  436 (448)
Q Consensus       389 g~~~~~~~~~~g~~~~~~lRis~~~~~~~t~edid~l~~al~~~~~~~  436 (448)
                      | +.+.++...+...++++|++++    ++++|++++++.|+++.+++
T Consensus       363 g-i~v~~g~~~~~~~~~~iRis~~----~~~~~i~~~~~~l~~~~~~~  405 (407)
T 3nra_A          363 G-VVVTPGTEFSPHTADSVRLNFS----QDHEAAVAAARRIVTLVERY  405 (407)
T ss_dssp             C-EECEEGGGTCTTCTTBEEEECC----SCHHHHHHHHHHHHHHHHHH
T ss_pred             C-EEEeCchhhCCCCCCEEEEEeC----CCHHHHHHHHHHHHHHHHHh
Confidence            8 5555544333222479999994    28999999999999988764

>3a2b_A Serine palmitoyltransferase; vitamin B6-dependent enzyme fold type I, acyltransferase, PY phosphate; HET: PLP; 2.30A {Sphingobacterium multivorum}

Probab=99.89  E-value=2.4e-21  Score=195.86  Aligned_cols=286  Identities=12%  Similarity=0.091  Sum_probs=194.0

Q ss_pred             cEEEeCcHHHHHHHHHHHHHHhcCCcccccCCCCCCCeEEEecCCCchHHHHHHHHhCCCCCcEEEEecCCCCCcCHHHH
Q psy14299          4 KPFLLPGGSISNMYSICLARYRLDPDTKRKGLSHLPPLCMFTSEDSHYSMLKAAHWLGIGMDNVIRVKTNERGQMICSFL   83 (448)
Q Consensus         4 ~g~~t~ggT~an~~al~~a~~~~~~~~~~~G~~~~~~~~Vl~~~~~H~s~~~~~~~~g~~~~~v~~v~~~~~g~id~e~L   83 (448)
                      .+++|+|||+++..++.++..              +++.|+++...|.++..+++..|.   +++.+|.     +|+++|
T Consensus       105 ~v~~~~ggt~a~~~~~~~~~~--------------~gd~V~~~~p~~~~~~~~~~~~g~---~~~~v~~-----~d~~~l  162 (398)
T 3a2b_A          105 AAILFSTGFQSNLGPLSCLMG--------------RNDYILLDERDHASIIDGSRLSFS---KVIKYGH-----NNMEDL  162 (398)
T ss_dssp             EEEEESSHHHHHHHHHHHSSC--------------TTCEEEEETTCCHHHHHHHHHSSS---EEEEECT-----TCHHHH
T ss_pred             cEEEECCHHHHHHHHHHHHhC--------------CCCEEEECCccCHHHHHHHHHcCC---ceEEeCC-----CCHHHH
Confidence            478999999999988876533              567899999999999999999888   7888876     589999


Q ss_pred             HHHHHHhhhcCCCcEEEEEeccCCccccccCHHHHHHHHHHcCCEEEEecccccccccc-cchhhhhcCC-CCccEEEEC
Q psy14299         84 EQTIQTSLAEKKIPLFVNATAGTTVLGAFDPLDEIATVCEKYDLWMHVDACWGGSLIFS-EKYSFVLKGI-NRANSVSWN  161 (448)
Q Consensus        84 e~~l~~~~~~~~~~~lVv~~~~~t~tG~~~~l~~I~~ia~~~g~~l~VD~A~~~~~~~~-~~~~~~~~~~-~~aD~~~~s  161 (448)
                      ++++++..+  .++++|++++++|++|.+.|+++|.++|++||+++++|++|+.+.+.. ........++ +.+|+++.+
T Consensus       163 ~~~l~~~~~--~~~~~v~~~~~~nptG~~~~~~~l~~~~~~~~~~li~De~~~~~~~~~~~~~~~~~~~~~~~~di~~~s  240 (398)
T 3a2b_A          163 RAKLSRLPE--DSAKLICTDGIFSMEGDIVNLPELTSIANEFDAAVMVDDAHSLGVIGHKGAGTASHFGLNDDVDLIMGT  240 (398)
T ss_dssp             HHHHHTSCS--SSCEEEEEESBCTTTCCBCCHHHHHHHHHHHTCEEEEECTTTTTTSSGGGCCHHHHHTCGGGCSEEEEE
T ss_pred             HHHHHhhcc--CCceEEEEeCCCCCCCCccCHHHHHHHHHHcCcEEEEECCCcccccCCCCCchHhhcCCCcCCeEEEec
Confidence            999975211  157899999999999999999999999999999999999998764311 1100111122 136999999


Q ss_pred             CccccCCCCceEEEEEeccchhhhhccCCcccccccCcccccccCCCCCcccCCCCchhHHHHHHHHHhChHHHHHHHHH
Q psy14299        162 PHKMLGAPLQCSILLIKEKGLLHQANATAATYLFQQDKFYDVSFDTGDKSVQCGRKVDAFKLWLMWKARGNLGFRHFVDN  241 (448)
Q Consensus       162 ~hK~l~~P~g~G~l~vr~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~g~~~~i~~  241 (448)
                      +||+++ |.| |+++.++ ++..........+.....                 ..  ...                   
T Consensus       241 ~sK~~~-~~G-G~~~~~~-~~~~~l~~~~~~~~~~~~-----------------~~--~~~-------------------  279 (398)
T 3a2b_A          241 FSKSLA-SLG-GFVAGDA-DVIDFLKHNARSVMFSAS-----------------MT--PAS-------------------  279 (398)
T ss_dssp             SSSTTC-SSC-EEEEECH-HHHHHHHHHCHHHHSSBC-----------------CC--HHH-------------------
T ss_pred             cccccc-CCC-cEEEeCH-HHHHHHHHhcccceecCC-----------------CC--HHH-------------------
Confidence            999998 666 8877754 433332211111110000                 00  000                   


Q ss_pred             hhhhccCCCccchhhhhhhhhhhhhhhhhhhhhhhccccccccccCCCCCccccccchhhHHHHHHHHHhcCccHHHHHH
Q psy14299        242 AVDCSRGSMTFSTLLCFDLQGLLHQANATAATYLFQQDKFYDVSFDTGDKSVQCGRKVDAFKLWLMWKARGNLGFRHFVD  321 (448)
Q Consensus       242 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~  321 (448)
                                                                                 ...+..+++..  +.++++.+
T Consensus       280 -----------------------------------------------------------~a~~~~~l~~~--~~~~~~~~  298 (398)
T 3a2b_A          280 -----------------------------------------------------------VASTLKALEII--QNEPEHIE  298 (398)
T ss_dssp             -----------------------------------------------------------HHHHHHHHHHH--HHCTHHHH
T ss_pred             -----------------------------------------------------------HHHHHHHHHHH--hhCHHHHH
Confidence                                                                       00111222221  12445677


Q ss_pred             HHHHHHHHHHHHhhcCCCeEEeccCCceeeEEEEeeccCCCccccchhhhhhhhhhhHHHHHHHHhCCcEEEEeeecCC-
Q psy14299        322 NAVDCSRYFLSQISQRPGFRLVIPEFQCTNICFWFIPVSLRDKVEDETWWSTLSKVAPRIKEKLVLGGTLMIGYQPLQH-  400 (448)
Q Consensus       322 ~~~~l~~~~~~~L~~~pg~~l~~~~~~~~~v~f~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~L~~~g~~~~~~~~~~g-  400 (448)
                      +..++++++.+.|+++ |++++ . +....+.+.+ +.+.               ...++.+.|.++| +.+.+....+ 
T Consensus       299 ~~~~~~~~l~~~L~~~-g~~~~-~-~~g~~~~~~~-~~~~---------------~~~~l~~~l~~~g-i~v~~~~~~~~  358 (398)
T 3a2b_A          299 KLWKNTDYAKAQLLDH-GFDLG-A-TESPILPIFI-RSNE---------------KTFWVTKMLQDDG-VFVNPVVSPAV  358 (398)
T ss_dssp             HHHHHHHHHHHHHHHT-TCCBC-S-CCSSEEEEEC-CCHH---------------HHHHHHHHHHHTT-EECEEECTTTS
T ss_pred             HHHHHHHHHHHHHHhc-CCCcC-C-CCCCEEEEEc-CCHH---------------HHHHHHHHHHHCC-cEEEeeCCCCC
Confidence            8888999999999998 88875 3 4444444443 2111               1247888999998 5555543321 


Q ss_pred             cccccEEEEEecCCCCCCHHHHHHHHHHHHHHHHHhH
Q psy14299        401 RNLHNFFRLVTTCHPASSRQDMDYAIDQIELRGAEVD  437 (448)
Q Consensus       401 ~~~~~~lRis~~~~~~~t~edid~l~~al~~~~~~~~  437 (448)
                      ....+++|+++  +.+++++|+++++++|+++.++++
T Consensus       359 ~~~~~~iRis~--~~~~~~e~i~~~~~~l~~~l~~~~  393 (398)
T 3a2b_A          359 PAEESLIRFSL--MATHTYDQIDEAIEKMVKVFKQAE  393 (398)
T ss_dssp             CGGGCEEEEEC--CTTCCHHHHHHHHHHHHHHHHHCC
T ss_pred             CCCCceEEEEE--eCCCCHHHHHHHHHHHHHHHHHhC
Confidence            11237999999  568999999999999999987654

>1rv3_A Serine hydroxymethyltransferase, cytosolic; one-carbon metabolism; HET: GLY PLP; 2.40A {Oryctolagus cuniculus} SCOP: c.67.1.4 PDB: 1rv4_A* 1rvu_A* 1rvy_A* 1ls3_A* 1cj0_A* 1bj4_A* 1eji_A*

Probab=99.89  E-value=3.1e-22  Score=208.69  Aligned_cols=298  Identities=13%  Similarity=0.066  Sum_probs=193.0

Q ss_pred             EEeCcHHHHHHHHHHHHHHhcCCcccccCCCCCCCeEEEecCCCchHHHH--------HHHHhCCCCCcEEEEecC-CCC
Q psy14299          6 FLLPGGSISNMYSICLARYRLDPDTKRKGLSHLPPLCMFTSEDSHYSMLK--------AAHWLGIGMDNVIRVKTN-ERG   76 (448)
Q Consensus         6 ~~t~ggT~an~~al~~a~~~~~~~~~~~G~~~~~~~~Vl~~~~~H~s~~~--------~~~~~g~~~~~v~~v~~~-~~g   76 (448)
                      +++++|+.+|+.++.+..+              |++.|++++.+|.+...        .+...|... .++.++++ +++
T Consensus       114 V~~~sGs~an~~~~~all~--------------pGD~Vl~~~~~~~~~~~~~~~~~~~~v~~~G~~~-~~v~~~~~~~~~  178 (483)
T 1rv3_A          114 VQPYSGSPANFAVYTALVE--------------PHGRIMGLDLPDGGHLTHGFMTDKKKISATSIFF-ESMAYKVNPDTG  178 (483)
T ss_dssp             CCCSSHHHHHHHHHHHHTC--------------TTCEEEEECGGGTCCGGGCCBCSSCBCSHHHHHS-EEEEECBCTTTC
T ss_pred             EEECCcHHHHHHHHHHhcC--------------CCCEEEEecCccCcCcchhhhhcccCcccccceE-EEEECccccCCC
Confidence            4455555888777766533              67889999988887653        223334201 34444446 578


Q ss_pred             CcCHHHHHHHHHHhhhcCCCcEEEEEeccCCccccccCHHHHHHHHHHcCCEEEEecccccccccccchhhhhcCCCCcc
Q psy14299         77 QMICSFLEQTIQTSLAEKKIPLFVNATAGTTVLGAFDPLDEIATVCEKYDLWMHVDACWGGSLIFSEKYSFVLKGINRAN  156 (448)
Q Consensus        77 ~id~e~Le~~l~~~~~~~~~~~lVv~~~~~t~tG~~~~l~~I~~ia~~~g~~l~VD~A~~~~~~~~~~~~~~~~~~~~aD  156 (448)
                      .+|+++|++++.+.     +|++|++ ++++++ .+.|+++|.++|++||+++++|+||+.+....+.....+   ..+|
T Consensus       179 ~iD~d~le~~i~~~-----~tklIi~-~~sn~~-~~~dl~~i~~ia~~~g~~livD~ah~~g~~~~~~~~~p~---~~~d  248 (483)
T 1rv3_A          179 YIDYDRLEENARLF-----HPKLIIA-GTSCYS-RNLDYGRLRKIADENGAYLMADMAHISGLVVAGVVPSPF---EHCH  248 (483)
T ss_dssp             SBCHHHHHHHHHHH-----CCSEEEE-CCSSCC-SCCCHHHHHHHHHHTTCEEEEECTTTHHHHHHTSSCCGG---GTCS
T ss_pred             cCCHHHHHHHHhhc-----CCcEEEE-eCCcCC-CcCCHHHHHHHHHHcCCEEEEEccchhcccccCCCCCCC---CCCc
Confidence            99999999999742     5788888 777777 889999999999999999999999997766443222111   2479


Q ss_pred             EEEECCccccCCCCceEEEEEeccchhhhhccCCcccccccCcccccccCCCCCcccCCCCchhHHHHHHHHHhChHHHH
Q psy14299        157 SVSWNPHKMLGAPLQCSILLIKEKGLLHQANATAATYLFQQDKFYDVSFDTGDKSVQCGRKVDAFKLWLMWKARGNLGFR  236 (448)
Q Consensus       157 ~~~~s~hK~l~~P~g~G~l~vr~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~g~~  236 (448)
                      ++++++||++.+|.| |+++++++. .. . ....+   ...                  .+               .+.
T Consensus       249 iv~~s~~K~l~Gprg-G~i~~~~~~-~~-~-~~~~g---~~~------------------~y---------------~~~  288 (483)
T 1rv3_A          249 VVTTTTHKTLRGCRA-GMIFYRRGV-RS-V-DPKTG---KEI------------------LY---------------NLE  288 (483)
T ss_dssp             EEEEESSGGGCCCSC-EEEEEECSB-CC------------CC------------------BC---------------CHH
T ss_pred             EEEecCcccCCCCCc-eEEEEcchh-hh-h-ccccC---cch------------------hh---------------HHH
Confidence            999999999999998 999987752 11 0 00000   000                  00               000


Q ss_pred             HHHHHhhhhccCCCccchhhhhhhhhhhhhhhhhhhhhhhccccccccccCCCCCcccccc-chhhHHHHHHHHHhcCcc
Q psy14299        237 HFVDNAVDCSRGSMTFSTLLCFDLQGLLHQANATAATYLFQQDKFYDVSFDTGDKSVQCGR-KVDAFKLWLMWKARGNLG  315 (448)
Q Consensus       237 ~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~G  315 (448)
                      ..++....                                            .+  .++++ ...+.++..+++.....+
T Consensus       289 ~~~~~~~~--------------------------------------------~~--~~g~~~~~~iaal~~Al~~~~~~~  322 (483)
T 1rv3_A          289 SLINSAVF--------------------------------------------PG--LQGGPHNHAIAGVAVALKQAMTPE  322 (483)
T ss_dssp             HHHHHHHT--------------------------------------------TT--TCCSCCHHHHHHHHHHHHHHTSHH
T ss_pred             HHhhhhcC--------------------------------------------Cc--ccCCccHHHHHHHHHHHHHHhChh
Confidence            00100000                                            00  01222 233455667888877789


Q ss_pred             HHHHHHHHHHHHHHHHHHhhcCCCeEEeccCCc-eeeEEEEeeccCCCccccchhhhhhhhhhhHHHHHHHHhCCcEEEE
Q psy14299        316 FRHFVDNAVDCSRYFLSQISQRPGFRLVIPEFQ-CTNICFWFIPVSLRDKVEDETWWSTLSKVAPRIKEKLVLGGTLMIG  394 (448)
Q Consensus       316 ~~~~~~~~~~l~~~~~~~L~~~pg~~l~~~~~~-~~~v~f~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~L~~~g~~~~~  394 (448)
                      ++++.++..++++++.+.|.++ |++++ .+.. ...+.+.+.+.+++               ..++.+.|.+.| +.+.
T Consensus       323 ~~~~~~~~~~~~~~l~~~L~~~-g~~~~-~~~~~~~~~~v~~~~~g~~---------------~~~~~~~L~~~g-I~v~  384 (483)
T 1rv3_A          323 FKEYQRQVVANCRALSAALVEL-GYKIV-TGGSDNHLILVDLRSKGTD---------------GGRAEKVLEACS-IACN  384 (483)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHT-TCEEG-GGSCSSSEEEEEGGGGTCC---------------HHHHHHHHHHTT-EECE
T ss_pred             HHHHHHHHHHHHHHHHHHHHhc-CCEec-cCCCCCceEEEeccCCCCC---------------HHHHHHHHHhCC-cEEe
Confidence            9999999999999999999998 99987 4322 23333433332222               135677787888 5554


Q ss_pred             ----eeecCCcccccEEEEEecCCCCCC----HHHHHHHHHHHHHHHHH
Q psy14299        395 ----YQPLQHRNLHNFFRLVTTCHPASS----RQDMDYAIDQIELRGAE  435 (448)
Q Consensus       395 ----~~~~~g~~~~~~lRis~~~~~~~t----~edid~l~~al~~~~~~  435 (448)
                          ++.. ....++++|+|+.  .++|    ++|+++++++|+++.+.
T Consensus       385 ~~~~pg~~-~~~~~~~iRis~~--~~~t~g~~~edi~~~~~~l~~~l~~  430 (483)
T 1rv3_A          385 KNTCPGDK-SALRPSGLRLGTP--ALTSRGLLEKDFQKVAHFIHRGIEL  430 (483)
T ss_dssp             EECCSSCS-CTTSCCEEEEECH--HHHHTTCCHHHHHHHHHHHHHHHHH
T ss_pred             cCCCCCCC-cCCCCceEEeecC--CcccCCCCHHHHHHHHHHHHHHHHh
Confidence                3221 0011378999994  5677    99999999999998765

>1xi9_A Putative transaminase; alanine aminotransferase, southeast collaboratory for structural genomics, secsg; HET: PLP; 2.33A {Pyrococcus furiosus} SCOP: c.67.1.1

Probab=99.89  E-value=1.9e-21  Score=197.37  Aligned_cols=284  Identities=13%  Similarity=0.030  Sum_probs=194.4

Q ss_pred             cEEEeCcHHHHHHHHHHHHHHhcCCcccccCCCCCCCeEEEecCCCchHHHHHHHHhCCCCCcEEEEecCC--CCCcCHH
Q psy14299          4 KPFLLPGGSISNMYSICLARYRLDPDTKRKGLSHLPPLCMFTSEDSHYSMLKAAHWLGIGMDNVIRVKTNE--RGQMICS   81 (448)
Q Consensus         4 ~g~~t~ggT~an~~al~~a~~~~~~~~~~~G~~~~~~~~Vl~~~~~H~s~~~~~~~~g~~~~~v~~v~~~~--~g~id~e   81 (448)
                      .+++|+|||+++..++.++..              +++.|+++..+|.++...++..|.   +++.+|.++  ++.+|++
T Consensus       103 ~v~~t~g~~~al~~~~~~l~~--------------~gd~Vl~~~~~~~~~~~~~~~~g~---~~~~v~~~~~~~~~~d~~  165 (406)
T 1xi9_A          103 DVRVTAAVTEALQLIFGALLD--------------PGDEILVPGPSYPPYTGLVKFYGG---KPVEYRTIEEEDWQPDID  165 (406)
T ss_dssp             GEEEESHHHHHHHHHHHHHCC--------------TTCEEEEEESCCHHHHHHHHHTTC---EEEEEEEEGGGTSEECHH
T ss_pred             HEEEcCChHHHHHHHHHHhCC--------------CCCEEEEcCCCCccHHHHHHHcCC---EEEEeecCCCcCCcCCHH
Confidence            578999999999988877632              567789999999999999999888   788888864  4578999


Q ss_pred             HHHHHHHHhhhcCCCcEEEEEeccCCccccccC---HHHHHHHHHHcCCEEEEecccccccccccchh-hhhcCCCCc-c
Q psy14299         82 FLEQTIQTSLAEKKIPLFVNATAGTTVLGAFDP---LDEIATVCEKYDLWMHVDACWGGSLIFSEKYS-FVLKGINRA-N  156 (448)
Q Consensus        82 ~Le~~l~~~~~~~~~~~lVv~~~~~t~tG~~~~---l~~I~~ia~~~g~~l~VD~A~~~~~~~~~~~~-~~~~~~~~a-D  156 (448)
                      +|++++++      ++++|++++++|++|.+.|   +++|.++|++||+++++|++|+.+....+... ..+.  ... |
T Consensus       166 ~l~~~l~~------~~~~v~i~~p~nptG~~~~~~~l~~i~~~a~~~~~~li~De~~~~~~~~~~~~~~~~~~--~~~~~  237 (406)
T 1xi9_A          166 DIRKKITD------RTKAIAVINPNNPTGALYDKKTLEEILNIAGEYEIPVISDEIYDLMTYEGEHISPGSLT--KDVPV  237 (406)
T ss_dssp             HHHHHCCT------TEEEEEEESSCTTTCCCCCHHHHHHHHHHHHHHTCCEEEECTTTTCBSSSCCCCHHHHC--SSSCE
T ss_pred             HHHHhhCc------CceEEEEECCCCCCCCCcCHHHHHHHHHHHHHcCCEEEEEcCccccccCCCCCCHHHcC--CCceE
Confidence            99999854      4788999999999999866   99999999999999999999987654111000 1111  235 7


Q ss_pred             EEEECCccccCCCCc--eEEEEE-ecc----chhhhhccCCcccccccCcccccccCCCCCcccCCCCchhHHHHHHHHH
Q psy14299        157 SVSWNPHKMLGAPLQ--CSILLI-KEK----GLLHQANATAATYLFQQDKFYDVSFDTGDKSVQCGRKVDAFKLWLMWKA  229 (448)
Q Consensus       157 ~~~~s~hK~l~~P~g--~G~l~v-r~~----~~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  229 (448)
                      +++.++||+++ ++|  +|++++ .++    ++........ .+.                                   
T Consensus       238 i~~~s~sK~~~-~~G~r~G~~~~~~~~~~~~~l~~~l~~~~-~~~-----------------------------------  280 (406)
T 1xi9_A          238 IVMNGLSKVYF-ATGWRLGYMYFVDPENKLSEVREAIDRLA-RIR-----------------------------------  280 (406)
T ss_dssp             EEEEESTTTTC-CGGGCCEEEEEECTTCTTHHHHHHHHHHH-HHT-----------------------------------
T ss_pred             EEEeccccccC-CCccEEEEEEEecCchhHHHHHHHHHHHH-Hhh-----------------------------------
Confidence            88899999987 344  788773 233    3322211000 000                                   


Q ss_pred             hChHHHHHHHHHhhhhccCCCccchhhhhhhhhhhhhhhhhhhhhhhccccccccccCCCCCccccccchhhHHHHHHHH
Q psy14299        230 RGNLGFRHFVDNAVDCSRGSMTFSTLLCFDLQGLLHQANATAATYLFQQDKFYDVSFDTGDKSVQCGRKVDAFKLWLMWK  309 (448)
Q Consensus       230 ~g~~g~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  309 (448)
                                                                                      .+.+.+.+..+..+++
T Consensus       281 ----------------------------------------------------------------~~~~~~~~~a~~~~l~  296 (406)
T 1xi9_A          281 ----------------------------------------------------------------LCPNTPAQFAAIAGLT  296 (406)
T ss_dssp             ----------------------------------------------------------------CCSCSHHHHHHHHHHH
T ss_pred             ----------------------------------------------------------------cCCCHHHHHHHHHHHh
Confidence                                                                            0011111222223333


Q ss_pred             HhcCccHHHHHHHHHHHHHHHHHHhhcCCCeEEeccCCceeeEEEEeecc--CCCccccchhhhhhhhhhhHHHHHHHH-
Q psy14299        310 ARGNLGFRHFVDNAVDCSRYFLSQISQRPGFRLVIPEFQCTNICFWFIPV--SLRDKVEDETWWSTLSKVAPRIKEKLV-  386 (448)
Q Consensus       310 ~~~~~G~~~~~~~~~~l~~~~~~~L~~~pg~~l~~~~~~~~~v~f~~~~~--~~~~~~~~~~~~~~~~~~~~~i~~~L~-  386 (448)
                      . +.++++++.++..++++++.+.|+++|+++++  .+..+.+.+...+.  +.+               ..++.+.|. 
T Consensus       297 ~-~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~--~~~~~~~~~~~~~~~~~~~---------------~~~l~~~l~~  358 (406)
T 1xi9_A          297 G-PMDYLKEYMKKLKERRDYIYKRLNEIPGISTT--KPQGAFYIFPKIEVGPWKN---------------DKEFVLDVLH  358 (406)
T ss_dssp             S-CCHHHHHHHHHHHHHHHHHHHHHHTSTTEECC--CCCBSSEECCEECSCSCSS---------------HHHHHHHHHH
T ss_pred             C-CcHHHHHHHHHHHHHHHHHHHHHHhCCCCeee--cCCeeEEEEEecCccCCCC---------------HHHHHHHHHH
Confidence            2 23457778888899999999999999999875  34445554421121  111               236788887 


Q ss_pred             hCCcEEEEeeecCCcccccEEEEEecCCCCCCHHHHHHHHHHHHHHHHHh
Q psy14299        387 LGGTLMIGYQPLQHRNLHNFFRLVTTCHPASSRQDMDYAIDQIELRGAEV  436 (448)
Q Consensus       387 ~~g~~~~~~~~~~g~~~~~~lRis~~~~~~~t~edid~l~~al~~~~~~~  436 (448)
                      ++| +.+.++...+...++++|+++  +  +++++++++++.|+++.+++
T Consensus       359 ~~g-i~v~~g~~f~~~~~~~lRis~--~--~~~~~i~~~~~~l~~~l~~~  403 (406)
T 1xi9_A          359 NAH-VLFVHGSGFGEYGAGHFRAVF--L--PPIEILEEAMDRFEKFMKER  403 (406)
T ss_dssp             HHC-EECEEGGGGCGGGTTBEEEEC--C--SCHHHHHHHHHHHHHHHHHC
T ss_pred             hCC-EEEeCchhcCCCCCCEEEEEe--c--CCHHHHHHHHHHHHHHHHHH
Confidence            778 555544332211237899999  4  79999999999999988764

>1j32_A Aspartate aminotransferase; HET: PLP; 2.10A {Phormidium lapideum} SCOP: c.67.1.1

Probab=99.89  E-value=2.2e-21  Score=195.30  Aligned_cols=282  Identities=12%  Similarity=0.056  Sum_probs=191.7

Q ss_pred             cEEEeCcHHHHHHHHHHHHHHhcCCcccccCCCCCCCeEEEecCCCchHHHHHHHHhCCCCCcEEEEecCC--CCCcCHH
Q psy14299          4 KPFLLPGGSISNMYSICLARYRLDPDTKRKGLSHLPPLCMFTSEDSHYSMLKAAHWLGIGMDNVIRVKTNE--RGQMICS   81 (448)
Q Consensus         4 ~g~~t~ggT~an~~al~~a~~~~~~~~~~~G~~~~~~~~Vl~~~~~H~s~~~~~~~~g~~~~~v~~v~~~~--~g~id~e   81 (448)
                      .+++|+|||+++..++.++..              +++.|+++..+|+++...++..|.   +++.+|.++  ++.+|++
T Consensus        92 ~v~~~~g~~~a~~~~~~~~~~--------------~gd~vl~~~~~~~~~~~~~~~~g~---~~~~v~~~~~~~~~~d~~  154 (388)
T 1j32_A           92 NILVTNGGKQSIFNLMLAMIE--------------PGDEVIIPAPFWVSYPEMVKLAEG---TPVILPTTVETQFKVSPE  154 (388)
T ss_dssp             GEEEESHHHHHHHHHHHHHCC--------------TTCEEEEESSCCTHHHHHHHHTTC---EEEEECCCGGGTTCCCHH
T ss_pred             hEEEcCCHHHHHHHHHHHhcC--------------CCCEEEEcCCCChhHHHHHHHcCC---EEEEecCCcccCCCCCHH
Confidence            478999999999998877633              566789999999999999999888   788898875  5689999


Q ss_pred             HHHHHHHHhhhcCCCcEEEEEeccCCcccccc---CHHHHHHHHHHcCCEEEEecccccccccccchhhhhcCC----CC
Q psy14299         82 FLEQTIQTSLAEKKIPLFVNATAGTTVLGAFD---PLDEIATVCEKYDLWMHVDACWGGSLIFSEKYSFVLKGI----NR  154 (448)
Q Consensus        82 ~Le~~l~~~~~~~~~~~lVv~~~~~t~tG~~~---~l~~I~~ia~~~g~~l~VD~A~~~~~~~~~~~~~~~~~~----~~  154 (448)
                      +|++++++      ++++|++++++|++|.+.   ++++|.++|++||+++++|++|+.+......... +..+    ..
T Consensus       155 ~l~~~l~~------~~~~v~~~~p~nptG~~~~~~~l~~i~~~~~~~~~~li~De~~~~~~~~~~~~~~-~~~~~~~~~~  227 (388)
T 1j32_A          155 QIRQAITP------KTKLLVFNTPSNPTGMVYTPDEVRAIAQVAVEAGLWVLSDEIYEKILYDDAQHLS-IGAASPEAYE  227 (388)
T ss_dssp             HHHHHCCT------TEEEEEEESSCTTTCCCCCHHHHHHHHHHHHHHTCEEEEECTTTTCBCTTCCCCC-GGGSCHHHHH
T ss_pred             HHHHhcCc------CceEEEEeCCCCCCCcCCCHHHHHHHHHHHHHcCCEEEEEccchhcccCCCCCCC-HHHccccccC
Confidence            99999854      478999999999999985   4999999999999999999999875442111000 0011    13


Q ss_pred             ccEEEECCccccCCCCc--eEEEEEeccchhhhhccCCcccccccCcccccccCCCCCcccCCCCchhHHHHHHHHHhCh
Q psy14299        155 ANSVSWNPHKMLGAPLQ--CSILLIKEKGLLHQANATAATYLFQQDKFYDVSFDTGDKSVQCGRKVDAFKLWLMWKARGN  232 (448)
Q Consensus       155 aD~~~~s~hK~l~~P~g--~G~l~vr~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~  232 (448)
                      .|+++.++||+++ ++|  +|+++++++ +..........+               .++      ...+           
T Consensus       228 ~~~~~~s~sK~~~-~~G~r~G~~~~~~~-~~~~l~~~~~~~---------------~~~------~~~~-----------  273 (388)
T 1j32_A          228 RSVVCSGFAKTYA-MTGWRVGFLAGPVP-LVKAATKIQGHS---------------TSN------VCTF-----------  273 (388)
T ss_dssp             TEEEEEESTTTTT-CTTTCCEEEECCHH-HHHHHHHHHHTT---------------TCS------CCHH-----------
T ss_pred             CEEEEeechhccC-CcccceEEEEeCHH-HHHHHHHHHhhc---------------ccC------CCHH-----------
Confidence            6899999999986 445  888877543 332221100000               000      0000           


Q ss_pred             HHHHHHHHHhhhhccCCCccchhhhhhhhhhhhhhhhhhhhhhhccccccccccCCCCCccccccchhhHHHHHHHHHhc
Q psy14299        233 LGFRHFVDNAVDCSRGSMTFSTLLCFDLQGLLHQANATAATYLFQQDKFYDVSFDTGDKSVQCGRKVDAFKLWLMWKARG  312 (448)
Q Consensus       233 ~g~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  312 (448)
                                                                                         ....+..+++. +
T Consensus       274 -------------------------------------------------------------------~~~a~~~~l~~-~  285 (388)
T 1j32_A          274 -------------------------------------------------------------------AQYGAIAAYEN-S  285 (388)
T ss_dssp             -------------------------------------------------------------------HHHHHHHHHHS-C
T ss_pred             -------------------------------------------------------------------HHHHHHHHHhC-C
Confidence                                                                               01111122221 2


Q ss_pred             CccHHHHHHHHHHHHHHHHHHhhcCCCeEEeccCCceeeEEEEeecc-CCCccccchhhhhhhhhhhHHHHHHHHh-CCc
Q psy14299        313 NLGFRHFVDNAVDCSRYFLSQISQRPGFRLVIPEFQCTNICFWFIPV-SLRDKVEDETWWSTLSKVAPRIKEKLVL-GGT  390 (448)
Q Consensus       313 ~~G~~~~~~~~~~l~~~~~~~L~~~pg~~l~~~~~~~~~v~f~~~~~-~~~~~~~~~~~~~~~~~~~~~i~~~L~~-~g~  390 (448)
                      .++++++.++..++++++.+.|+++||++++  .+..+.+.+...+. +.               ...++.+.|.+ +| 
T Consensus       286 ~~~~~~~~~~~~~~~~~l~~~L~~~~g~~~~--~~~~~~~~~~~~~~~~~---------------~~~~~~~~l~~~~g-  347 (388)
T 1j32_A          286 QDCVQEMLAAFAERRRYMLDALNAMPGLECP--KPDGAFYMFPSIAKTGR---------------SSLDFCSELLDQHQ-  347 (388)
T ss_dssp             SHHHHHHHHHHHHHHHHHHHHHHTCTTCBCC--CCCBTTEECCBCGGGTC---------------CHHHHHHHHHHHHC-
T ss_pred             cHHHHHHHHHHHHHHHHHHHHHhhCCCCccc--CCCeeEEEEEecCCCCC---------------CHHHHHHHHHHhCC-
Confidence            3456778888899999999999999999875  34444443321111 11               12368888886 68 


Q ss_pred             EEEEeeecCCcccccEEEEEecCCCCCCHHHHHHHHHHHHHHHHH
Q psy14299        391 LMIGYQPLQHRNLHNFFRLVTTCHPASSRQDMDYAIDQIELRGAE  435 (448)
Q Consensus       391 ~~~~~~~~~g~~~~~~lRis~~~~~~~t~edid~l~~al~~~~~~  435 (448)
                      +.+.++...+.  ++++|+++  .  +++++++++++.|+++.++
T Consensus       348 i~v~~g~~~~~--~~~iRis~--~--~~~~~i~~~~~~l~~~l~~  386 (388)
T 1j32_A          348 VATVPGAAFGA--DDCIRLSY--A--TDLDTIKRGMERLEKFLHG  386 (388)
T ss_dssp             EECEEGGGGTC--TTBEEEEC--C--SCHHHHHHHHHHHHHHHHH
T ss_pred             EEEeChhhhCC--CCcEEEEe--c--CCHHHHHHHHHHHHHHHHH
Confidence            55554432221  37899999  3  5899999999999988765

>2x3l_A ORN/Lys/Arg decarboxylase family protein; lyase; HET: LLP; 2.00A {Staphylococcus aureus}

Probab=99.89  E-value=1.6e-22  Score=208.70  Aligned_cols=274  Identities=12%  Similarity=0.029  Sum_probs=184.0

Q ss_pred             cEEEeCcHHHHHHHHHHHHHHhcCCcccccCCCCCCCeEEEecCCCchHHHHHHHHhCCCCCcEEEEec--CCC----CC
Q psy14299          4 KPFLLPGGSISNMYSICLARYRLDPDTKRKGLSHLPPLCMFTSEDSHYSMLKAAHWLGIGMDNVIRVKT--NER----GQ   77 (448)
Q Consensus         4 ~g~~t~ggT~an~~al~~a~~~~~~~~~~~G~~~~~~~~Vl~~~~~H~s~~~~~~~~g~~~~~v~~v~~--~~~----g~   77 (448)
                      ..++|+|+|++|..++.++..              +++.|++++.+|.++..++...|.   +++.++.  +++    +.
T Consensus        74 ~v~~~~G~t~a~~~~~~a~~~--------------~gd~Vlv~~~~h~s~~~~~~~~G~---~~~~v~~~~~~~~~~~~~  136 (446)
T 2x3l_A           74 GYFLVNGTTSGILSVIQSFSQ--------------KKGDILMARNVHKSVLHALDISQQ---EGHFIETHQSPLTNHYNK  136 (446)
T ss_dssp             EEEESSHHHHHHHHHHHTTTT--------------SSSCEEECTTCCHHHHHHHHHHTC---CEEECEEEECTTTSSEEE
T ss_pred             eEEEeCCHHHHHHHHHHHhcC--------------CCCEEEEecCccHHHHHHHHHcCC---eEEEEeCeeccccCcCCC
Confidence            468899999999999877643              567799999999999999999998   6778887  655    67


Q ss_pred             cCHHHHHHHHHHhhhcCCCcEEEEEeccCCccccccCHHHHHHHHHHcCCEEEEecccccccccccchhhhhcCCCCccE
Q psy14299         78 MICSFLEQTIQTSLAEKKIPLFVNATAGTTVLGAFDPLDEIATVCEKYDLWMHVDACWGGSLIFSEKYSFVLKGINRANS  157 (448)
Q Consensus        78 id~e~Le~~l~~~~~~~~~~~lVv~~~~~t~tG~~~~l~~I~~ia~~~g~~l~VD~A~~~~~~~~~~~~~~~~~~~~aD~  157 (448)
                      +|+++|   +.      .++++|++++ .|++|.+.|+++|.++|++||+++|+|+||+.+..+.+. ....... .+|+
T Consensus       137 ~d~~~l---~~------~~~~~v~~~~-~n~~G~~~~l~~I~~l~~~~~~~livDea~~~~~~f~~~-~~~~~~~-g~Di  204 (446)
T 2x3l_A          137 VNLSRL---NN------DGHKLVVLTY-PNYYGETFNVEEVIKSLHQLNIPVLIDEAHGAHFGLQGF-PDSTLNY-QADY  204 (446)
T ss_dssp             EEC----------------CCEEEEES-SCTTSCCCCHHHHHHHHHHTTCCEEEECTTCTTTTSTTS-CCCGGGG-TCSE
T ss_pred             CCHHHH---cC------CCceEEEEEC-CCCCeEecCHHHHHHHHHhcCCeEEEcchhhhhhccCCC-CCChHHc-CCCE
Confidence            898887   22      2478899998 566999999999999999999999999999983222221 1111111 3799


Q ss_pred             EEECCccccCCCCceEEEEEeccchhhhhccCCcccccccCcccccccCCCCCcccCCCCchhHHHHHHHHHhChHHHHH
Q psy14299        158 VSWNPHKMLGAPLQCSILLIKEKGLLHQANATAATYLFQQDKFYDVSFDTGDKSVQCGRKVDAFKLWLMWKARGNLGFRH  237 (448)
Q Consensus       158 ~~~s~hK~l~~P~g~G~l~vr~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~g~~~  237 (448)
                      ++.|+||++++|.|+|+++++++.............+ .                 .+.+                    
T Consensus       205 ~~~S~~K~l~~~~g~g~l~~~~~~i~~~~~~~~~~~~-~-----------------~~s~--------------------  246 (446)
T 2x3l_A          205 VVQSFHKTLPALTMGSVLYIHKNAPYRENIIEYLSYF-Q-----------------TSSP--------------------  246 (446)
T ss_dssp             EEECHHHHSSSCTTCEEEEEETTCTTHHHHHHHHHHH-S-----------------CSSC--------------------
T ss_pred             EEECCccccccccccEEEEEcCCcCCHHHHHHHHHHH-c-----------------CCCc--------------------
Confidence            9999999999999999999977532100000000000 0                 0000                    


Q ss_pred             HHHHhhhhccCCCccchhhhhhhhhhhhhhhhhhhhhhhccccccccccCCCCCccccccchhhHHHHHHHHHhcCccHH
Q psy14299        238 FVDNAVDCSRGSMTFSTLLCFDLQGLLHQANATAATYLFQQDKFYDVSFDTGDKSVQCGRKVDAFKLWLMWKARGNLGFR  317 (448)
Q Consensus       238 ~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~  317 (448)
                                                                                 .......+..+++++...|.+
T Consensus       247 -----------------------------------------------------------~~~~~aal~~a~~~l~~~g~~  267 (446)
T 2x3l_A          247 -----------------------------------------------------------SYLIMASLESAAQFYKTYDST  267 (446)
T ss_dssp             -----------------------------------------------------------CHHHHHHHHHHHHHHHHCCCH
T ss_pred             -----------------------------------------------------------hHHHHHHHHHHHHHHHHhCHH
Confidence                                                                       011112233344555556777


Q ss_pred             HHHHHHHHHHHHHHHHhhcCCCeEEeccCCceeeEEEEeeccCCCccccchhhhhhhhhhhHHHHHHHHhCCcEEEEeee
Q psy14299        318 HFVDNAVDCSRYFLSQISQRPGFRLVIPEFQCTNICFWFIPVSLRDKVEDETWWSTLSKVAPRIKEKLVLGGTLMIGYQP  397 (448)
Q Consensus       318 ~~~~~~~~l~~~~~~~L~~~pg~~l~~~~~~~~~v~f~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~L~~~g~~~~~~~~  397 (448)
                      ++.++..++++++++.     |++++ .+.....+.+.+.  +.+               ..++.+.|.++| +.+... 
T Consensus       268 ~~~~~~~~l~~~l~~~-----g~~~~-~~~~~~~l~i~~~--~~~---------------~~~l~~~L~~~G-I~v~~~-  322 (446)
T 2x3l_A          268 LFFAKRAQLIECLENK-----GFEML-QVDDPLKLLIKYE--GFT---------------GHDIQNWFMNAH-IYLELA-  322 (446)
T ss_dssp             HHHHHHHHHHHHHHHH-----TCEEE-ECSSTTEEEEECT--TSC---------------HHHHHHHHHHTT-EEESEE-
T ss_pred             HHHHHHHHHHHHHHHc-----CCEEC-cCCCCeEEEEEeC--CcC---------------HHHHHHHHHHCC-CEEEec-
Confidence            7788888888888887     78876 3322223444331  222               236888898888 444311 


Q ss_pred             cCCcccccEEEEEecCCCCCCHHHHHHHHHHHHHHHHHh
Q psy14299        398 LQHRNLHNFFRLVTTCHPASSRQDMDYAIDQIELRGAEV  436 (448)
Q Consensus       398 ~~g~~~~~~lRis~~~~~~~t~edid~l~~al~~~~~~~  436 (448)
                        +.   +++|+++  +.++|++|+ +++++|+++.+.+
T Consensus       323 --g~---~~iRi~~--~~~~t~e~i-~l~~aL~~~~~~~  353 (446)
T 2x3l_A          323 --DD---YQALAIL--PLWHHDDTY-LFDSLLRKIEDMI  353 (446)
T ss_dssp             --CS---SCEEEEC--CCCCTTCCC-CHHHHHHHHHTCC
T ss_pred             --CC---CEEEEEe--ecCCCHHHH-HHHHHHHHHHHhh
Confidence              22   6899999  678999999 9999999998655

>1c4k_A Protein (ornithine decarboxylase); lyase; HET: PLP GTP; 2.70A {Lactobacillus SP} SCOP: c.23.1.4 c.67.1.5 d.125.1.1 PDB: 1ord_A*

Probab=99.89  E-value=4.3e-22  Score=216.17  Aligned_cols=311  Identities=14%  Similarity=0.041  Sum_probs=198.1

Q ss_pred             cEEEeCcHHHHHHHHHHHHHHhcCCcccccCCCCCCCeEEEecCCCchHHHHH-HHHhCCCCCcEEEEecCCC-----CC
Q psy14299          4 KPFLLPGGSISNMYSICLARYRLDPDTKRKGLSHLPPLCMFTSEDSHYSMLKA-AHWLGIGMDNVIRVKTNER-----GQ   77 (448)
Q Consensus         4 ~g~~t~ggT~an~~al~~a~~~~~~~~~~~G~~~~~~~~Vl~~~~~H~s~~~~-~~~~g~~~~~v~~v~~~~~-----g~   77 (448)
                      ..++++|+|++|..++.+...              +++.|++++..|.|+..+ +++.|.   +++.++.+.+     |.
T Consensus       191 ~i~v~nGtt~an~~ai~al~~--------------pGD~VLv~~~~H~S~~~~~~~l~Ga---~~v~v~~~~~~~~i~g~  253 (730)
T 1c4k_A          191 TYFVLGGSSNANNTVTSALVS--------------NGDLVLFDRNNHKSVYNSALAMAGG---RPVYLQTNRNPYGFIGG  253 (730)
T ss_dssp             EEEESSHHHHHHHHHHHHHCC--------------TTCEEEEETTCCHHHHHHHTTTTCC---EEEEECEEECTTCCEEE
T ss_pred             EEEECCHHHHHHHHHHHHhcC--------------CCCEEEEcCCchHHHHHHHHHHCCC---EEEEEeCCccccCccCC
Confidence            356677777899888877543              677899999999999998 777777   6777765432     45


Q ss_pred             cCHHHH-----HHHHHHh-hh--cCCCc-EEEEEeccCCccccccCHHHHHHHHHHcCCEEEEecccccccccccchh--
Q psy14299         78 MICSFL-----EQTIQTS-LA--EKKIP-LFVNATAGTTVLGAFDPLDEIATVCEKYDLWMHVDACWGGSLIFSEKYS--  146 (448)
Q Consensus        78 id~e~L-----e~~l~~~-~~--~~~~~-~lVv~~~~~t~tG~~~~l~~I~~ia~~~g~~l~VD~A~~~~~~~~~~~~--  146 (448)
                      +|+++|     +++|++. .+  ...++ ++|+++++ |++|.+.|+++|+++|++||+++|||+||+.+..+.+..+  
T Consensus       254 id~e~L~~~~le~~i~~~~~~~~~t~~~vklviv~~p-n~~G~v~dl~~I~~la~~~g~~livDeAh~~~~~f~~~~~g~  332 (730)
T 1c4k_A          254 IYDSDFDEKKIRELAAKVDPERAKWKRPFRLAVIQLG-TYDGTIYNAHEVVKRIGHLCDYIEFDSAWVGYEQFIPMMRNS  332 (730)
T ss_dssp             ECGGGSCHHHHHHHTTTSSHHHHTCSCCBSEEEEESB-CTTSEEECHHHHHHHHGGGBSEEEEECTTCCGGGSSGGGGGG
T ss_pred             CCHHHHhhhHHHHHhhcCCcccccccCCCeEEEEECC-CCCCeecCHHHHHHHHHHcCCeEEEEcccccccccCcccCCc
Confidence            899998     7777542 11  01123 78888887 4699999999999999999999999999987644333221  


Q ss_pred             hhhcC-CCCcc----EEEECCccccCCCCceEEEEEeccchhhhhccCCcccccccCcccccccCCCCCcccCCCCchhH
Q psy14299        147 FVLKG-INRAN----SVSWNPHKMLGAPLQCSILLIKEKGLLHQANATAATYLFQQDKFYDVSFDTGDKSVQCGRKVDAF  221 (448)
Q Consensus       147 ~~~~~-~~~aD----~~~~s~hK~l~~P~g~G~l~vr~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~  221 (448)
                      ..+.. ...+|    +++.|+||++++|.+.|+++++++.+..     ...++..                         
T Consensus       333 ~~l~~~~~g~D~~~~iv~~S~hK~L~g~~~gg~I~v~~~~l~g-----~~~~i~~-------------------------  382 (730)
T 1c4k_A          333 SPLLIDDLGPEDPGIIVVQSVHKQQAGFSQTSQIHKKDSHIKG-----QLRYCDH-------------------------  382 (730)
T ss_dssp             CTTSCCCCCTTSCEEEEEECHHHHSSCCTTCEEEEEECGGGTT-----STTCCCH-------------------------
T ss_pred             CcccccccCCCCCCEEEEECCCCCCCCCCCEEEEEecchhhcC-----cccccCH-------------------------
Confidence            00110 01367    9999999999999999999998864210     0011100                         


Q ss_pred             HHHHHHHHhChHHHHHHHHHhhhhccCCCccchhhhhhhhhhhhhhhhhhhhhhhccccccccccCCCCCccccccchhh
Q psy14299        222 KLWLMWKARGNLGFRHFVDNAVDCSRGSMTFSTLLCFDLQGLLHQANATAATYLFQQDKFYDVSFDTGDKSVQCGRKVDA  301 (448)
Q Consensus       222 ~~~~~~~~~g~~g~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  301 (448)
                                 ..+....... .                                                -..++...+
T Consensus       383 -----------~~~~~~~~~~-~------------------------------------------------stsp~~~~i  402 (730)
T 1c4k_A          383 -----------KHFNNSFNLF-M------------------------------------------------STSPFYPMY  402 (730)
T ss_dssp             -----------HHHHHHHHHH-S------------------------------------------------CSSCCHHHH
T ss_pred             -----------HHHHHHHHHh-C------------------------------------------------CCCCcHHHH
Confidence                       0000000000 0                                                000112233


Q ss_pred             HHHHHHHHHhcCccHHHHHHHHHHHHHHHHHHhhc-CCCeEEeccCCc--------------------------------
Q psy14299        302 FKLWLMWKARGNLGFRHFVDNAVDCSRYFLSQISQ-RPGFRLVIPEFQ--------------------------------  348 (448)
Q Consensus       302 ~~~~~~~~~~~~~G~~~~~~~~~~l~~~~~~~L~~-~pg~~l~~~~~~--------------------------------  348 (448)
                      .++..+++.+..++-++..++..++++++++.|++ ++|++++ .+..                                
T Consensus       403 aal~aA~~~l~~~~g~~~~~~~~~~a~~lr~~L~~~i~g~~v~-~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~  481 (730)
T 1c4k_A          403 AALDVNAAMQEGEAGRKLWHDLLITTIEARKKLIKAGSMFRPF-VPPVVNGKKWEDGDTEDMANNIDYWRFEKGAKWHAY  481 (730)
T ss_dssp             HHHHHHHHHHSHHHHHHHHHHHHHHHHHHHHHHHHTTCSSEES-SCSEETTEEGGGSCHHHHTTCGGGGBCCTTCTTTCC
T ss_pred             HHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHhhhCCCeEEc-cccccccccccccccccccccchhhccCccchhccc
Confidence            44555666666534456678899999999999998 7999986 3321                                


Q ss_pred             ----ee---e----EEEEeeccCCCccccchhhhhhhhhhhHHHHHHHHhCCcEEEEeeecCCcccccEEEEEecCCCCC
Q psy14299        349 ----CT---N----ICFWFIPVSLRDKVEDETWWSTLSKVAPRIKEKLVLGGTLMIGYQPLQHRNLHNFFRLVTTCHPAS  417 (448)
Q Consensus       349 ----~~---~----v~f~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~L~~~g~~~~~~~~~~g~~~~~~lRis~~~~~~~  417 (448)
                          .+   +    ++|.. | +++..   .......+....++.+.|.++| +++...   +.   ..+|+++  |+++
T Consensus       482 ~~~~~~~~~idp~kv~i~~-p-g~~~~---~g~~~~~g~~~~~l~~~L~e~G-I~v~~~---~~---~~ir~~~--s~g~  547 (730)
T 1c4k_A          482 EGYGDNQYYVDPNKFMLTT-P-GINPE---TGDYEDFGVPATIVANYLRDHG-IIPEKS---DL---NSILFLM--TPAE  547 (730)
T ss_dssp             TTCCTTCEEECTTEEEEEC-S-SEETT---TTEECSSCCCHHHHHHHHHHTT-CCCSEE---CS---SEEEEEC--CTTC
T ss_pred             cccCCcccccCCeEEEEEe-C-Ccccc---cccccccCCCHHHHHHHHHHCC-cEEEEC---CC---CeEEEEe--CCCC
Confidence                00   0    23322 1 11000   0000001112347888999988 444332   22   6899999  8999


Q ss_pred             CHHHHHHHHHHHHHHHHHhH
Q psy14299        418 SRQDMDYAIDQIELRGAEVD  437 (448)
Q Consensus       418 t~edid~l~~al~~~~~~~~  437 (448)
                      |++|+++|+++|+++.+...
T Consensus       548 t~e~i~~Ll~aL~~i~~~~~  567 (730)
T 1c4k_A          548 TPAKMNNLITQLLQLQRLIE  567 (730)
T ss_dssp             CHHHHHHHHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHHHHHHhcc
Confidence            99999999999999987764

>3a9z_A Selenocysteine lyase; PLP, cytoplasm, pyridoxal phosphate, transferase; HET: PLP SLP; 1.55A {Rattus norvegicus} PDB: 3a9x_A* 3a9y_A* 3gzd_A* 3gzc_A* 2hdy_A*

Probab=99.89  E-value=2.6e-21  Score=197.71  Aligned_cols=160  Identities=16%  Similarity=0.155  Sum_probs=120.4

Q ss_pred             cEEEeCcHHHHHHHHHHHHHHhcCCcccccCC------CC-CCCeEEEecCCCchHHHHHHHH----hCCCCCcEEEEec
Q psy14299          4 KPFLLPGGSISNMYSICLARYRLDPDTKRKGL------SH-LPPLCMFTSEDSHYSMLKAAHW----LGIGMDNVIRVKT   72 (448)
Q Consensus         4 ~g~~t~ggT~an~~al~~a~~~~~~~~~~~G~------~~-~~~~~Vl~~~~~H~s~~~~~~~----~g~~~~~v~~v~~   72 (448)
                      .++||+|||+++..++.++.+.+.....+.|-      +. .....|+++..+|+|+..++..    .|.   +++.+|.
T Consensus        80 ~v~~~~g~t~a~~~~~~~~~~~~~~~~~~~gd~vl~~~p~y~~~~~i~~~~~~h~s~~~~~~~~~~~~g~---~v~~v~~  156 (432)
T 3a9z_A           80 DIIFTSGGTESNNLVIHSTVRCFHEQQTLQGRTVDQISPEEGTRPHFITCTVEHDSIRLPLEHLVEDQVA---EVTFVPV  156 (432)
T ss_dssp             GEEEESCHHHHHHHHHHHHHHHHHHHHHHC------------CCCEEEEETTCCHHHHHHHHHHHHTTSC---EEEEECC
T ss_pred             eEEEeCChHHHHHHHHHHHHhhhhhccccCCccccccccccccCCeEEEecCcchhHHHHHHHHHHhcCc---EEEEEec
Confidence            58999999999998887764210000000110      00 1124788999999999877654    355   7889998


Q ss_pred             CC-CCCcCHHHHHHHHHHhhhcCCCcEEEEEeccCCccccccCHHHHHHHHHHcC----------CEEEEeccccccccc
Q psy14299         73 NE-RGQMICSFLEQTIQTSLAEKKIPLFVNATAGTTVLGAFDPLDEIATVCEKYD----------LWMHVDACWGGSLIF  141 (448)
Q Consensus        73 ~~-~g~id~e~Le~~l~~~~~~~~~~~lVv~~~~~t~tG~~~~l~~I~~ia~~~g----------~~l~VD~A~~~~~~~  141 (448)
                      ++ ++.+|+++|++++++      ++++|++++++|++|.+.|+++|.++|+++|          +++|+|++|+.+..+
T Consensus       157 ~~~~~~~d~~~l~~~i~~------~~~~v~~~~~~nptG~~~~~~~i~~l~~~~~~~~~~~~~~~~~livDea~~~~~~~  230 (432)
T 3a9z_A          157 SKVNGQVEVEDILAAVRP------TTCLVTIMLANNETGVIMPISEISRRIKALNQIRAASGLPRVLVHTDAAQALGKRR  230 (432)
T ss_dssp             CTTTSSCCHHHHHHTCCT------TEEEEECCSBCTTTCBBCCHHHHHHHHHHHHHHHHHHTCCCCEEEEECTTTTTTSC
T ss_pred             CcccCCcCHHHHHHhccC------CceEEEEECcccCcccccCHHHHHHHHHhcCcccccccCCceEEEEEchhhhCCcc
Confidence            76 788999999998854      4889999999999999999999999999999          999999999877543


Q ss_pred             ccchhhhhcCCCCccEEEECCccccCCCCceEEEEEecc
Q psy14299        142 SEKYSFVLKGINRANSVSWNPHKMLGAPLQCSILLIKEK  180 (448)
Q Consensus       142 ~~~~~~~~~~~~~aD~~~~s~hK~l~~P~g~G~l~vr~~  180 (448)
                      .+..     .. .+|+++.|+||+++ |. +|+++++++
T Consensus       231 ~~~~-----~~-~~d~~~~s~~K~~g-~~-~G~~~~~~~  261 (432)
T 3a9z_A          231 VDVE-----DL-GVDFLTIVGHKFYG-PR-IGALYVRGV  261 (432)
T ss_dssp             CCHH-----HH-CCSEEEEEGGGTTC-CS-CEEEEETTB
T ss_pred             cChh-----hc-CCCEEEEehhHhcC-Cc-ceEEEEccc
Confidence            3211     11 36899999999875 76 999998764

>3uwc_A Nucleotide-sugar aminotransferase; lipopolysaccharide biosynthesis; HET: MSE PMP; 1.80A {Coxiella burnetii}

Probab=99.88  E-value=5.7e-22  Score=198.46  Aligned_cols=289  Identities=10%  Similarity=0.041  Sum_probs=192.8

Q ss_pred             cEEEeCcHHHHHHHHHHHHHHhcCCcccccCCCCCCCeEEEecCCCchHHHHHHHHhCCCCCcEEEEecCCCCCcCHHHH
Q psy14299          4 KPFLLPGGSISNMYSICLARYRLDPDTKRKGLSHLPPLCMFTSEDSHYSMLKAAHWLGIGMDNVIRVKTNERGQMICSFL   83 (448)
Q Consensus         4 ~g~~t~ggT~an~~al~~a~~~~~~~~~~~G~~~~~~~~Vl~~~~~H~s~~~~~~~~g~~~~~v~~v~~~~~g~id~e~L   83 (448)
                      .+++|+|||+++..++.+++.             .+++.|+++..+|.++..+++..|.   +++.++.++++.+|+++|
T Consensus        55 ~~~~~~~gt~a~~~~~~~~~~-------------~~gd~v~~~~~~~~~~~~~~~~~g~---~~~~~~~~~~~~~d~~~l  118 (374)
T 3uwc_A           55 HAIGVGTGTDALAMSFKMLNI-------------GAGDEVITCANTFIASVGAIVQAGA---TPVLVDSENGYVIDPEKI  118 (374)
T ss_dssp             EEEEESCHHHHHHHHHHHTTC-------------CTTCEEEEESSSCHHHHHHHHHTTC---EEEEECBCTTSSBCGGGT
T ss_pred             cEEEeCCHHHHHHHHHHHcCC-------------CCCCEEEECCCccHHHHHHHHHcCC---EEEEEecCCCCCcCHHHH
Confidence            578999999998888776522             2667899999999999999999998   799999988889999999


Q ss_pred             HHHHHHhhhcCCCcEEEEEeccCCccccccCHHHHHHHHHHcCCEEEEecccccccccccchhhhhcCCCCccEEEECCc
Q psy14299         84 EQTIQTSLAEKKIPLFVNATAGTTVLGAFDPLDEIATVCEKYDLWMHVDACWGGSLIFSEKYSFVLKGINRANSVSWNPH  163 (448)
Q Consensus        84 e~~l~~~~~~~~~~~lVv~~~~~t~tG~~~~l~~I~~ia~~~g~~l~VD~A~~~~~~~~~~~~~~~~~~~~aD~~~~s~h  163 (448)
                      ++++++      ++++|+   +++++|.+.|+++|.++|++||+++|+|++|+.+...... .  . + ...|++++++|
T Consensus       119 ~~~~~~------~~~~v~---~~n~~G~~~~~~~i~~~~~~~~~~li~D~~~~~g~~~~~~-~--~-~-~~~d~~~~s~~  184 (374)
T 3uwc_A          119 EAAITD------KTKAIM---PVHYTGNIADMPALAKIAKKHNLHIVEDACQTILGRINDK-F--V-G-SWGQFACFSLH  184 (374)
T ss_dssp             GGGCCT------TEEEEC---CBCGGGCCCCHHHHHHHHHHTTCEEEEECTTCTTCEETTE-E--T-T-SSSSEEEEECS
T ss_pred             HHhCCC------CceEEE---EeCCcCCcCCHHHHHHHHHHcCCEEEEeCCCccCceeCCe-e--c-c-ccccEEEEeCC
Confidence            998854      466666   7788999999999999999999999999999977542111 1  1 1 12599999977


Q ss_pred             --cccCCCCceEEEEEeccchhhhhccCCcccccccCcccccccCCCCCcccCCCCchhHHHHHHHHHhChHHHHHHHHH
Q psy14299        164 --KMLGAPLQCSILLIKEKGLLHQANATAATYLFQQDKFYDVSFDTGDKSVQCGRKVDAFKLWLMWKARGNLGFRHFVDN  241 (448)
Q Consensus       164 --K~l~~P~g~G~l~vr~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~g~~~~i~~  241 (448)
                        |+++++...|+++.+++.+............ ...    .......+      .+.                      
T Consensus       185 ~~K~l~~~g~~g~~~~~~~~~~~~~~~~~~~~~-~~~----~~~~~~~~------~~~----------------------  231 (374)
T 3uwc_A          185 PLKNLNVWSDAGVIITHSDEYAEKLRLYRNHGL-INR----DVCVEYGI------NCR----------------------  231 (374)
T ss_dssp             SSSSSCCSSCCEEEEESCHHHHHHHHHHTBTTE-EET----TEESSCCC------BCB----------------------
T ss_pred             CCCcCCccceeEEEEeCCHHHHHHHHHHHhcCc-ccc----Cccccccc------cCC----------------------
Confidence              9998755567776665544332211000000 000    00000000      000                      


Q ss_pred             hhhhccCCCccchhhhhhhhhhhhhhhhhhhhhhhccccccccccCCCCCccccccchhhHHHHHHHHHhcCccHHHHHH
Q psy14299        242 AVDCSRGSMTFSTLLCFDLQGLLHQANATAATYLFQQDKFYDVSFDTGDKSVQCGRKVDAFKLWLMWKARGNLGFRHFVD  321 (448)
Q Consensus       242 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~  321 (448)
                                                                                 ...+..++.....++++++.+
T Consensus       232 -----------------------------------------------------------~~~~~aa~~~~~~~~~~~~~~  252 (374)
T 3uwc_A          232 -----------------------------------------------------------MDTIQAVIANRLMNQLETITE  252 (374)
T ss_dssp             -----------------------------------------------------------CCHHHHHHHHHHGGGHHHHHH
T ss_pred             -----------------------------------------------------------CCHHHHHHHHHHHHHHHHHHH
Confidence                                                                       001111222233456777888


Q ss_pred             HHHHHHHHHHHHhhcCCC-eEEeccCCc--eee-EEEEeeccCCCccccchhhhhhhhhhhHHHHHHHHhCCcEEEEeee
Q psy14299        322 NAVDCSRYFLSQISQRPG-FRLVIPEFQ--CTN-ICFWFIPVSLRDKVEDETWWSTLSKVAPRIKEKLVLGGTLMIGYQP  397 (448)
Q Consensus       322 ~~~~l~~~~~~~L~~~pg-~~l~~~~~~--~~~-v~f~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~L~~~g~~~~~~~~  397 (448)
                      +..++++++.+.|+++++ +++. ..+.  ... ..|.....                 ...++.+.|.++|+ .+.+..
T Consensus       253 ~~~~~~~~l~~~l~~~~~~~~~~-~~~~~~~~~~~~~~~~~~-----------------~~~~l~~~L~~~gi-~v~~~~  313 (374)
T 3uwc_A          253 KRRGIAHLYDQSFVDLSEFIDVP-VRREGVYHVFHIYVLRVK-----------------YRDQLFQYLKDNGI-EVKIHY  313 (374)
T ss_dssp             HHHHHHHHHHHHTGGGTTTEECC-CCCTTEECCCSSEEEEET-----------------THHHHHHHHHHTTB-CCBCSC
T ss_pred             HHHHHHHHHHHHhccCCCeEEec-cCCCCCceeeEEEEEEcC-----------------CHHHHHHHHHHCCC-ccccCC
Confidence            889999999999999988 8875 3222  111 22322111                 12378889999984 343321


Q ss_pred             c----CCc----------c-------cccEEEEEecCCCCCCHHHHHHHHHHHHHHHHH
Q psy14299        398 L----QHR----------N-------LHNFFRLVTTCHPASSRQDMDYAIDQIELRGAE  435 (448)
Q Consensus       398 ~----~g~----------~-------~~~~lRis~~~~~~~t~edid~l~~al~~~~~~  435 (448)
                      .    ...          .       ....+|+++  +.++|++||++++++|+++.++
T Consensus       314 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lrl~~--~~~~t~edi~~~~~~l~~~l~~  370 (374)
T 3uwc_A          314 PIAMHLQPAAKSLGYQQGDFPMAEKHGEAVITLPA--HPYLTEEEINYIIKKVREFYLE  370 (374)
T ss_dssp             SSCGGGSGGGGGGCCCTTSCHHHHHHHHHEEEECC--CTTSCHHHHHHHHHHHHHHHHT
T ss_pred             CCccccChhhhhcCCccCCCccHHHHHhCEEEccC--CCCCCHHHHHHHHHHHHHHHHh
Confidence            0    000          0       016899999  7899999999999999998865

>1bs0_A Protein (8-amino-7-oxonanoate synthase); PLP-dependent acyl-COA synthase, biotin biosynthesis, 8-AMIN oxonanoate synthase; 1.65A {Escherichia coli} SCOP: c.67.1.4 PDB: 2g6w_A* 1dje_A* 1dj9_A*

Probab=99.88  E-value=6.5e-21  Score=191.57  Aligned_cols=280  Identities=16%  Similarity=0.087  Sum_probs=190.6

Q ss_pred             cEEEeCcHHHHHHHHHHHHHHhcCCcccccCCCCCCCeEEEecCCCchHHHHHHHHhCCCCCcEEEEecCCCCCcCHHHH
Q psy14299          4 KPFLLPGGSISNMYSICLARYRLDPDTKRKGLSHLPPLCMFTSEDSHYSMLKAAHWLGIGMDNVIRVKTNERGQMICSFL   83 (448)
Q Consensus         4 ~g~~t~ggT~an~~al~~a~~~~~~~~~~~G~~~~~~~~Vl~~~~~H~s~~~~~~~~g~~~~~v~~v~~~~~g~id~e~L   83 (448)
                      ..+++++||+++..++.+...              +++.|+++...|.++..+++..|.   +++.+|.     +|+++|
T Consensus       101 ~~i~~~sGt~a~~~~~~~~~~--------------~gd~v~~~~~~~~~~~~~~~~~g~---~~~~~~~-----~d~~~l  158 (384)
T 1bs0_A          101 RALLFISGFAANQAVIAAMMA--------------KEDRIAADRLSHASLLEAASLSPS---QLRRFAH-----NDVTHL  158 (384)
T ss_dssp             EEEEESCHHHHHHHHHHHHCC--------------TTCEEEEETTCCHHHHHHHHTSSS---EEEEECT-----TCHHHH
T ss_pred             cEEEeCCcHHHHHHHHHHhCC--------------CCcEEEEcccccHHHHHHHHHcCC---CEEEeCC-----CCHHHH
Confidence            467888889999888766432              567889999999999999998887   7878874     489999


Q ss_pred             HHHHHHhhhcCCCcEEEEEeccCCccccccCHHHHHHHHHHcCCEEEEeccccccccc-c-cchhhhhcCCCCccEEEEC
Q psy14299         84 EQTIQTSLAEKKIPLFVNATAGTTVLGAFDPLDEIATVCEKYDLWMHVDACWGGSLIF-S-EKYSFVLKGINRANSVSWN  161 (448)
Q Consensus        84 e~~l~~~~~~~~~~~lVv~~~~~t~tG~~~~l~~I~~ia~~~g~~l~VD~A~~~~~~~-~-~~~~~~~~~~~~aD~~~~s  161 (448)
                      ++.+++.   ...+++|++.+++|++|.+.|+++|.++|++||+++++|++|+.+... . ..... ..+. ..|+++.+
T Consensus       159 ~~~l~~~---~~~~~~v~~~~~~nptG~~~~l~~i~~l~~~~~~~li~De~~~~~~~~~~~~~~~~-~~~~-~~di~~~s  233 (384)
T 1bs0_A          159 ARLLASP---CPGQQMVVTEGVFSMDGDSAPLAEIQQVTQQHNGWLMVDDAHGTGVIGEQGRGSCW-LQKV-KPELLVVT  233 (384)
T ss_dssp             HHHHHSC---CSSCEEEEEESBCTTTCCBCCHHHHHHHHHHTTCEEEEECTTTTTTSSGGGCCHHH-HTTC-CCSEEEEE
T ss_pred             HHHHHhc---CCCCeEEEEeCCCCCCCCccCHHHHHHHHHHcCcEEEEECCcccceecCCCCchHH-hcCC-CCcEEEee
Confidence            9999752   113678888999999999999999999999999999999999876532 1 11111 1121 47899999


Q ss_pred             CccccCCCCceEEEEEeccchhhhhccCCcccccccCcccccccCCCCCcccCCCCchhHHHHHHHHHhChHHHHHHHHH
Q psy14299        162 PHKMLGAPLQCSILLIKEKGLLHQANATAATYLFQQDKFYDVSFDTGDKSVQCGRKVDAFKLWLMWKARGNLGFRHFVDN  241 (448)
Q Consensus       162 ~hK~l~~P~g~G~l~vr~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~g~~~~i~~  241 (448)
                      +||+++ |.| |++++++ ++..........|....                   .                        
T Consensus       234 ~sK~~~-~~G-G~~~~~~-~~~~~l~~~~~~~~~~~-------------------~------------------------  267 (384)
T 1bs0_A          234 FGKGFG-VSG-AAVLCSS-TVADYLLQFARHLIYST-------------------S------------------------  267 (384)
T ss_dssp             SSSTTS-SCC-EEEEECH-HHHHHHHHHCHHHHSSB-------------------C------------------------
T ss_pred             ccchhh-ccC-cEEEeCH-HHHHHHHHhchhhhcCC-------------------C------------------------
Confidence            999998 656 8877753 44333221111111000                   0                        


Q ss_pred             hhhhccCCCccchhhhhhhhhhhhhhhhhhhhhhhccccccccccCCCCCccccccchhhHHHHHHHHHhcCccHHHHHH
Q psy14299        242 AVDCSRGSMTFSTLLCFDLQGLLHQANATAATYLFQQDKFYDVSFDTGDKSVQCGRKVDAFKLWLMWKARGNLGFRHFVD  321 (448)
Q Consensus       242 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~  321 (448)
                                                                            .+...+..+..+++.....+++++.+
T Consensus       268 ------------------------------------------------------~~~~~~~~~~~al~~~~~~~~~~~~~  293 (384)
T 1bs0_A          268 ------------------------------------------------------MPPAQAQALRASLAVIRSDEGDARRE  293 (384)
T ss_dssp             ------------------------------------------------------CCHHHHHHHHHHHHHHHSHHHHHHHH
T ss_pred             ------------------------------------------------------CCHHHHHHHHHHHHHHhccccHHHHH
Confidence                                                                  00111112223344433334567888


Q ss_pred             HHHHHHHHHHHHhhcCCCeEEeccCCceeeEEEEeeccCCCccccchhhhhhhhhhhHHHHHHHHhCCcEEEEeeecCCc
Q psy14299        322 NAVDCSRYFLSQISQRPGFRLVIPEFQCTNICFWFIPVSLRDKVEDETWWSTLSKVAPRIKEKLVLGGTLMIGYQPLQHR  401 (448)
Q Consensus       322 ~~~~l~~~~~~~L~~~pg~~l~~~~~~~~~v~f~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~L~~~g~~~~~~~~~~g~  401 (448)
                      +..++++++.+.|+++ |+++.  ++..+++.+.+. .+.               ...++.+.|.++| +.+.+....+.
T Consensus       294 ~~~~~~~~l~~~L~~~-g~~~~--~~~~~~~~~~~~-~~~---------------~~~~l~~~l~~~g-i~v~~~~~~~~  353 (384)
T 1bs0_A          294 KLAALITRFRAGVQDL-PFTLA--DSCSAIQPLIVG-DNS---------------RALQLAEKLRQQG-CWVTAIRPPTV  353 (384)
T ss_dssp             HHHHHHHHHHHHHTTS-SCEEC--SCCSSBCCEEEE-SHH---------------HHHHHHHHHHHTT-EECCEECTTSS
T ss_pred             HHHHHHHHHHHHHHhc-CCccc--CCCCCEEEEEeC-CHH---------------HHHHHHHHHHHCC-cEEEeecCCCC
Confidence            8999999999999998 88875  344455545442 111               1247888999998 55554433221


Q ss_pred             -ccccEEEEEecCCCCCCHHHHHHHHHHHHHH
Q psy14299        402 -NLHNFFRLVTTCHPASSRQDMDYAIDQIELR  432 (448)
Q Consensus       402 -~~~~~lRis~~~~~~~t~edid~l~~al~~~  432 (448)
                       ...+++|+++  +.+++++|+++++++|+++
T Consensus       354 ~~~~~~~Ri~~--~~~~~~~~i~~~~~~l~~~  383 (384)
T 1bs0_A          354 PAGTARLRLTL--TAAHEMQDIDRLLEVLHGN  383 (384)
T ss_dssp             CTTCEEECCBC--CTTCCHHHHHHHHHHHHHH
T ss_pred             CCCCceEEEEE--cCCCCHHHHHHHHHHHHhh
Confidence             1137999999  6788999999999999875

>2bwn_A 5-aminolevulinate synthase; tetrapyrrole biosynthesis, heme biosynthesis, pyridoxal PHOS dependent, transferase, acyltransferase; HET: LLP; 2.1A {Rhodobacter capsulatus} SCOP: c.67.1.4 PDB: 2bwo_A* 2bwp_A*

Probab=99.88  E-value=7e-21  Score=192.62  Aligned_cols=287  Identities=12%  Similarity=0.115  Sum_probs=192.7

Q ss_pred             EEeCcHHHHHHHHHHHHHHhcCCcccccCCCCCCCeEEEecCCCchHHHHHHHHhCCCCCcEEEEecCCCCCcCHHHHHH
Q psy14299          6 FLLPGGSISNMYSICLARYRLDPDTKRKGLSHLPPLCMFTSEDSHYSMLKAAHWLGIGMDNVIRVKTNERGQMICSFLEQ   85 (448)
Q Consensus         6 ~~t~ggT~an~~al~~a~~~~~~~~~~~G~~~~~~~~Vl~~~~~H~s~~~~~~~~g~~~~~v~~v~~~~~g~id~e~Le~   85 (448)
                      ++.++|+++|..++.++...            .+++.|+++..+|.++..+++..|.   +++.+|.+     |+++|++
T Consensus       110 i~~~sG~~a~~~~~~~l~~~------------~~gd~Vl~~~~~~~~~~~~~~~~g~---~~~~v~~~-----d~~~le~  169 (401)
T 2bwn_A          110 LVFSSAYNANDATLSTLRVL------------FPGLIIYSDSLNHASMIEGIKRNAG---PKRIFRHN-----DVAHLRE  169 (401)
T ss_dssp             EEESCHHHHHHHHHHHHHHH------------STTCEEEEETTCCHHHHHHHHHSCC---CEEEECTT-----CHHHHHH
T ss_pred             EEECCcHHHHHHHHHHHhcC------------CCCCEEEECchhhHHHHHHHHHcCC---eEEEEcCC-----CHHHHHH
Confidence            44455666888777654331            1567899999999999999998888   78888875     8999999


Q ss_pred             HHHHhhhcCCCcEEEEEeccCCccccccCHHHHHHHHHHcCCEEEEecccccccccccchhh-hhcCC-CCccEEEECCc
Q psy14299         86 TIQTSLAEKKIPLFVNATAGTTVLGAFDPLDEIATVCEKYDLWMHVDACWGGSLIFSEKYSF-VLKGI-NRANSVSWNPH  163 (448)
Q Consensus        86 ~l~~~~~~~~~~~lVv~~~~~t~tG~~~~l~~I~~ia~~~g~~l~VD~A~~~~~~~~~~~~~-~~~~~-~~aD~~~~s~h  163 (448)
                      .+++..  ..++++|++++++|++|.+.|+++|.++|++||+++++|++|+.+.+.-..... ...++ ...|.++.+++
T Consensus       170 ~l~~~~--~~~~~~v~~~~~~nptG~~~~l~~i~~l~~~~~~~li~Dea~~~g~~~~~g~~~~~~~~~~~~~~i~~~s~s  247 (401)
T 2bwn_A          170 LIAADD--PAAPKLIAFESVYSMDGDFGPIKEICDIAEEFGALTYIDEVHAVGMYGPRGAGVAERDGLMHRIDIFNGTLA  247 (401)
T ss_dssp             HHHHSC--TTSCEEEEEESBCTTTCCBCCHHHHHHHHHHHTCEEEEECTTTTTTSSTTSCCHHHHHTCGGGCSEEEEESS
T ss_pred             HHHhhc--cCCceEEEEecCcCCCCCcCCHHHHHHHHHHcCCEEEEeccccccccCCCCceeeeccCccccCcEEEeech
Confidence            997521  125789999999999999999999999999999999999999965431000000 01122 23588889999


Q ss_pred             cccCCCCceEEEEEeccchhhhhccCCcccccccCcccccccCCCCCcccCCCCchhHHHHHHHHHhChHHHHHHHHHhh
Q psy14299        164 KMLGAPLQCSILLIKEKGLLHQANATAATYLFQQDKFYDVSFDTGDKSVQCGRKVDAFKLWLMWKARGNLGFRHFVDNAV  243 (448)
Q Consensus       164 K~l~~P~g~G~l~vr~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~g~~~~i~~~~  243 (448)
                      |+++.|.  |++.. ++.+..........+....                                              
T Consensus       248 K~~~~~G--G~~~~-~~~~~~~l~~~~~~~~~~~----------------------------------------------  278 (401)
T 2bwn_A          248 KAYGVFG--GYIAA-SARMVDAVRSYAPGFIFST----------------------------------------------  278 (401)
T ss_dssp             STTCSCC--EEEEE-CHHHHHHHHHHCHHHHTSB----------------------------------------------
T ss_pred             hhccCCC--CEEec-CHHHHHHHHHhCcCceecC----------------------------------------------
Confidence            9998764  66555 3333222110000110000                                              


Q ss_pred             hhccCCCccchhhhhhhhhhhhhhhhhhhhhhhccccccccccCCCCCccccccchhhHHHHHHHHHhcCccHHHHHHHH
Q psy14299        244 DCSRGSMTFSTLLCFDLQGLLHQANATAATYLFQQDKFYDVSFDTGDKSVQCGRKVDAFKLWLMWKARGNLGFRHFVDNA  323 (448)
Q Consensus       244 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~  323 (448)
                                                                         ..+.+.+.++..+++++...|++++.++.
T Consensus       279 ---------------------------------------------------~~~~~~~~a~~~al~~~~~~~~~~~~~~~  307 (401)
T 2bwn_A          279 ---------------------------------------------------SLPPAIAAGAQASIAFLKTAEGQKLRDAQ  307 (401)
T ss_dssp             ---------------------------------------------------CCCHHHHHHHHHHHHHHTSHHHHHHHHHH
T ss_pred             ---------------------------------------------------CCCHHHHHHHHHHHHHHHhcccHHHHHHH
Confidence                                                               00012233344566777777888999999


Q ss_pred             HHHHHHHHHHhhcCCCeEEeccCCceeeEEEEeeccCCCccccchhhhhhhhhhhHHHHHHHH-hCCcEEEEeeecCCcc
Q psy14299        324 VDCSRYFLSQISQRPGFRLVIPEFQCTNICFWFIPVSLRDKVEDETWWSTLSKVAPRIKEKLV-LGGTLMIGYQPLQHRN  402 (448)
Q Consensus       324 ~~l~~~~~~~L~~~pg~~l~~~~~~~~~v~f~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~L~-~~g~~~~~~~~~~g~~  402 (448)
                      .++++++.+.|+++ |++++ . +..+++.|.+. .+.               ...++.+.|. ++| +.+.+....+..
T Consensus       308 ~~~~~~l~~~L~~~-g~~~~-~-~~~~~~~~~~~-~~~---------------~~~~~~~~L~~~~g-i~v~~~~~~~~~  367 (401)
T 2bwn_A          308 QMHAKVLKMRLKAL-GMPII-D-HGSHIVPVVIG-DPV---------------HTKAVSDMLLSDYG-VYVQPINFPTVP  367 (401)
T ss_dssp             HHHHHHHHHHHHHH-TCCBC-C-CSSSCEEEECC-CHH---------------HHHHHHHHHHHHHC-EECCEECTTTSC
T ss_pred             HHHHHHHHHHHHHC-CCccc-C-CCCCeEEEEeC-ChH---------------HHHHHHHHHHhcCC-EEEeecCCCCCC
Confidence            99999999999998 88875 3 44566666432 110               1236888886 678 555544332221


Q ss_pred             -cccEEEEEecCCCCCCHHHHHHHHHHHHHHHHHh
Q psy14299        403 -LHNFFRLVTTCHPASSRQDMDYAIDQIELRGAEV  436 (448)
Q Consensus       403 -~~~~lRis~~~~~~~t~edid~l~~al~~~~~~~  436 (448)
                       ..+++|+++  +.++|++|+++++++|+++.+++
T Consensus       368 ~~~~~iRis~--~~~~t~~~i~~~~~~l~~~~~~~  400 (401)
T 2bwn_A          368 RGTERLRFTP--SPVHDLKQIDGLVHAMDLLWARC  400 (401)
T ss_dssp             TTCCEEEECC--CTTSCHHHHHHHHHHHHHHC---
T ss_pred             CCCceEEEEe--eCCCCHHHHHHHHHHHHHHHHhc
Confidence             125899999  67899999999999999886543

>3kki_A CAI-1 autoinducer synthase; quorum sensing, CQSA, P virulence, acyltransferase, aminotransferase, pyridoxal PHO transferase; HET: PLP; 1.80A {Vibrio cholerae} PDB: 3hqt_A* 2wk9_A* 2wk8_A* 2wka_A* 2wk7_A

Probab=99.88  E-value=1.2e-20  Score=191.62  Aligned_cols=280  Identities=13%  Similarity=0.064  Sum_probs=189.5

Q ss_pred             EEEeCcHHHHHHHHHHHHHHhcCCcccccCCCCCCCeEEEecCCCchHHHHHHHHhCCCCCcEEEEecCCCCCcCHHHHH
Q psy14299          5 PFLLPGGSISNMYSICLARYRLDPDTKRKGLSHLPPLCMFTSEDSHYSMLKAAHWLGIGMDNVIRVKTNERGQMICSFLE   84 (448)
Q Consensus         5 g~~t~ggT~an~~al~~a~~~~~~~~~~~G~~~~~~~~Vl~~~~~H~s~~~~~~~~g~~~~~v~~v~~~~~g~id~e~Le   84 (448)
                      .+++++||++|..++.+...              +++.|+++...|.++..+++..|.   +++.++.     +|+++|+
T Consensus       122 ~i~~~sGt~a~~~~l~~~~~--------------~gd~Vl~~~~~~~~~~~~~~~~g~---~~~~~~~-----~d~~~le  179 (409)
T 3kki_A          122 CLLSQSGWNANVGLLQTICQ--------------PNTNVYIDFFAHMSLWEGARYANA---QAHPFMH-----NNCDHLR  179 (409)
T ss_dssp             EEEESCHHHHHHHHHHHHCC--------------TTCEEEEETTSCHHHHHHHHHTTC---EEEEECT-----TCHHHHH
T ss_pred             EEEecchHHHHHHHHHHhcC--------------CCCEEEECCCcCHHHHHHHHHcCC---eEEEecC-----CCHHHHH
Confidence            57788889999888876543              677899999999999999999888   6777665     5899999


Q ss_pred             HHHHHhhhcCCCcEEEEEeccCCccccccCHHHHHHHHHHcCCEEEEecccccccccccch-hhhhcCC-CCccEEEECC
Q psy14299         85 QTIQTSLAEKKIPLFVNATAGTTVLGAFDPLDEIATVCEKYDLWMHVDACWGGSLIFSEKY-SFVLKGI-NRANSVSWNP  162 (448)
Q Consensus        85 ~~l~~~~~~~~~~~lVv~~~~~t~tG~~~~l~~I~~ia~~~g~~l~VD~A~~~~~~~~~~~-~~~~~~~-~~aD~~~~s~  162 (448)
                      +++++.     ++++|+++++++++|.+.|+++|.++|++||+++++|++|+.+.+..... .....++ ..+|+++.++
T Consensus       180 ~~l~~~-----~~~~vi~~~~~nptG~~~~l~~l~~la~~~~~~li~De~~~~g~~g~~g~~~~~~~~~~~~~di~~~s~  254 (409)
T 3kki_A          180 MLIQRH-----GPGIIVVDSIYSTLGTIAPLAELVNISKEFGCALLVDESHSLGTHGPNGAGLLAELGLTREVHFMTASL  254 (409)
T ss_dssp             HHHHHH-----CSCEEEEESBCTTTCCBCCHHHHHHHHHHHTCEEEEECTTTTTTSSGGGCCHHHHHTCGGGCSEEEEES
T ss_pred             HHHHhc-----CCeEEEECCCCCCCCCcCCHHHHHHHHHHcCCEEEEECCccccccCCCCCcchhhcCCCCCCCEEEeec
Confidence            999762     36899999999999999999999999999999999999998765421100 0011112 2478999999


Q ss_pred             ccccCCCCceEEEEEeccchhhhhccCCcccccccCcccccccCCCCCcccCCCCchhHHHHHHHHHhChHHHHHHHHHh
Q psy14299        163 HKMLGAPLQCSILLIKEKGLLHQANATAATYLFQQDKFYDVSFDTGDKSVQCGRKVDAFKLWLMWKARGNLGFRHFVDNA  242 (448)
Q Consensus       163 hK~l~~P~g~G~l~vr~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~g~~~~i~~~  242 (448)
                      +|+++++  .|+++.++ .+..........+.+...                   ...                      
T Consensus       255 sK~~~~~--gg~v~~~~-~~~~~~~~~~~~~~~~~~-------------------~~~----------------------  290 (409)
T 3kki_A          255 AKTFAYR--AGAIWCNN-EVNRCVPFISYPAIFSST-------------------LLP----------------------  290 (409)
T ss_dssp             SSTTCSS--CEEEEESS-SGGGTHHHHCHHHHHSBC-------------------CCH----------------------
T ss_pred             chhhCCC--ceEEEECH-HHHHHHHHhCcCccccCC-------------------CcH----------------------
Confidence            9999876  36665544 333322211111111100                   000                      


Q ss_pred             hhhccCCCccchhhhhhhhhhhhhhhhhhhhhhhccccccccccCCCCCccccccchhhHHHHHHHHHhcCccHHHHHHH
Q psy14299        243 VDCSRGSMTFSTLLCFDLQGLLHQANATAATYLFQQDKFYDVSFDTGDKSVQCGRKVDAFKLWLMWKARGNLGFRHFVDN  322 (448)
Q Consensus       243 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~  322 (448)
                                                                              ....++..+++.....  +++.++
T Consensus       291 --------------------------------------------------------~~~aa~~aal~~~~~~--~~~~~~  312 (409)
T 3kki_A          291 --------------------------------------------------------YEAAGLETTLEIIESA--DNRRQH  312 (409)
T ss_dssp             --------------------------------------------------------HHHHHHHHHHHHHHHC--HHHHHH
T ss_pred             --------------------------------------------------------HHHHHHHHHHHHHhcC--HHHHHH
Confidence                                                                    0011111222322221  567778


Q ss_pred             HHHHHHHHHHHhhcCCCeEEeccCCceeeEEEEeeccCCCccccchhhhhhhhhhhHHHHHHHHhCCcEEEEeeecC-Cc
Q psy14299        323 AVDCSRYFLSQISQRPGFRLVIPEFQCTNICFWFIPVSLRDKVEDETWWSTLSKVAPRIKEKLVLGGTLMIGYQPLQ-HR  401 (448)
Q Consensus       323 ~~~l~~~~~~~L~~~pg~~l~~~~~~~~~v~f~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~L~~~g~~~~~~~~~~-g~  401 (448)
                      ..++++++.+.|+++ |+++.   +....+.+.+.+. .               ...++.+.|.++| +++.+.... ..
T Consensus       313 ~~~~~~~l~~~L~~~-g~~~~---~~~~~~~~~~~~~-~---------------~~~~~~~~L~~~G-v~v~~~~~~~~~  371 (409)
T 3kki_A          313 LDRMARKLRIGLSQL-GLTIR---SESQIIGLETGDE-R---------------NTEKVRDYLESNG-VFGSVFCRPATS  371 (409)
T ss_dssp             HHHHHHHHHHHHHTT-TCCCC---CSSSEEEEEEESH-H---------------HHHHHHHHHHHTT-EECEEECTTSSC
T ss_pred             HHHHHHHHHHHHHHc-CCccC---CCCCEEEEEeCCH-H---------------HHHHHHHHHHHCC-ceEeeeCCCCcC
Confidence            888999999999998 87764   3455555544210 0               1236888999998 444443221 11


Q ss_pred             ccccEEEEEecCCCCCCHHHHHHHHHHHHHHHHHh
Q psy14299        402 NLHNFFRLVTTCHPASSRQDMDYAIDQIELRGAEV  436 (448)
Q Consensus       402 ~~~~~lRis~~~~~~~t~edid~l~~al~~~~~~~  436 (448)
                      ...+++|+++  +..+|++|+++++++|+++.+..
T Consensus       372 ~~~~~iRi~~--~~~~t~e~i~~~~~~l~~~l~~~  404 (409)
T 3kki_A          372 KNKNIIRLSL--NSDVNDEQIAKIIEVCSDAVNYG  404 (409)
T ss_dssp             TTCEEEEEEC--CTTCCHHHHHHHHHHHHHHHHHS
T ss_pred             CCCcEEEEEc--cCCCCHHHHHHHHHHHHHHHhcC
Confidence            1237999999  67899999999999999988653

>3ffh_A Histidinol-phosphate aminotransferase; APC88260, listeria in CLIP11262, structural genomics, PSI-2; 2.31A {Listeria innocua} SCOP: c.67.1.0

Probab=99.88  E-value=2e-20  Score=186.62  Aligned_cols=273  Identities=10%  Similarity=0.022  Sum_probs=191.0

Q ss_pred             cEEEeCcHHHHHHHHHHHHHHhcCCcccccCCCCCCCeEEEecCCCchHHHHHHHHhCCCCCcEEEEecCCCCCcCHHHH
Q psy14299          4 KPFLLPGGSISNMYSICLARYRLDPDTKRKGLSHLPPLCMFTSEDSHYSMLKAAHWLGIGMDNVIRVKTNERGQMICSFL   83 (448)
Q Consensus         4 ~g~~t~ggT~an~~al~~a~~~~~~~~~~~G~~~~~~~~Vl~~~~~H~s~~~~~~~~g~~~~~v~~v~~~~~g~id~e~L   83 (448)
                      ..++|+|||+++..++.+...              +++.|+++...|.++...++..|.   +++.+|.++++.+|+++|
T Consensus        86 ~v~~~~g~t~a~~~~~~~~~~--------------~gd~vl~~~~~~~~~~~~~~~~g~---~~~~v~~~~~~~~d~~~l  148 (363)
T 3ffh_A           86 ELIFTAGVDELIELLTRVLLD--------------TTTNTVMATPTFVQYRQNALIEGA---EVREIPLLQDGEHDLEGM  148 (363)
T ss_dssp             GEEEESSHHHHHHHHHHHHCS--------------TTCEEEEEESSCHHHHHHHHHHTC---EEEEEECCTTSCCCHHHH
T ss_pred             hEEEeCCHHHHHHHHHHHHcc--------------CCCEEEEcCCChHHHHHHHHHcCC---EEEEecCCCCCCcCHHHH
Confidence            579999999999888876533              566788899999999999999998   899999988899999999


Q ss_pred             HHHHHHhhhcCCCcEEEEEeccCCccccccCHHHHHHHHHHc--CCEEEEecccccccccccchh-hhhcCCCCccEEEE
Q psy14299         84 EQTIQTSLAEKKIPLFVNATAGTTVLGAFDPLDEIATVCEKY--DLWMHVDACWGGSLIFSEKYS-FVLKGINRANSVSW  160 (448)
Q Consensus        84 e~~l~~~~~~~~~~~lVv~~~~~t~tG~~~~l~~I~~ia~~~--g~~l~VD~A~~~~~~~~~~~~-~~~~~~~~aD~~~~  160 (448)
                      ++++++      ++++|++++++|++|.+.|++++.++++.+  |+++++|++|+.+.. ..... .........++++.
T Consensus       149 ~~~i~~------~~~~v~~~~p~nptG~~~~~~~l~~l~~~~~~~~~li~De~~~~~~~-~~~~~~~~~~~~~~~~i~~~  221 (363)
T 3ffh_A          149 LNAIDE------KTTIVWICNPNNPTGNYIELADIQAFLDRVPSDVLVVLDEAYIEYVT-PQPEKHEKLVRTYKNLIITR  221 (363)
T ss_dssp             HHHCCT------TEEEEEEESSCTTTCCCCCHHHHHHHHTTSCTTSEEEEECTTGGGCS-SCCCCCGGGGGTCTTEEEEE
T ss_pred             HHhccc------CCCEEEEeCCCCCcCCCcCHHHHHHHHHhCCCCcEEEEeCchHhhcC-ccccCHHHHhhcCCCEEEEe
Confidence            999854      588999999999999999999999999988  999999999995443 10000 00001112347778


Q ss_pred             CCccccCCC-CceEEEEEeccchhhhhccCCcccccccCcccccccCCCCCcccCCCCchhHHHHHHHHHhChHHHHHHH
Q psy14299        161 NPHKMLGAP-LQCSILLIKEKGLLHQANATAATYLFQQDKFYDVSFDTGDKSVQCGRKVDAFKLWLMWKARGNLGFRHFV  239 (448)
Q Consensus       161 s~hK~l~~P-~g~G~l~vr~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~g~~~~i  239 (448)
                      +++|+++.| ..+|+++++ +++..........|                 +      ...+.                 
T Consensus       222 s~sK~~g~~G~r~G~~~~~-~~~~~~l~~~~~~~-----------------~------~~~~~-----------------  260 (363)
T 3ffh_A          222 TFSKIYGLASARVGYGIAD-KEIIRQLNIVRPPF-----------------N------TTSIG-----------------  260 (363)
T ss_dssp             ESSSTTCCSSCCCEEEEEC-HHHHHHHHHTCCSC-----------------C------CBHHH-----------------
T ss_pred             echhhhcCchhceeeeecC-HHHHHHHHHhCCCC-----------------C------CCHHH-----------------
Confidence            899998633 334888874 34433322111100                 0      00111                 


Q ss_pred             HHhhhhccCCCccchhhhhhhhhhhhhhhhhhhhhhhccccccccccCCCCCccccccchhhHHHHHHHHHhcCccHHHH
Q psy14299        240 DNAVDCSRGSMTFSTLLCFDLQGLLHQANATAATYLFQQDKFYDVSFDTGDKSVQCGRKVDAFKLWLMWKARGNLGFRHF  319 (448)
Q Consensus       240 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~  319 (448)
                                                                                   +..+..+++  ..++++++
T Consensus       261 -------------------------------------------------------------~~~~~~~l~--~~~~~~~~  277 (363)
T 3ffh_A          261 -------------------------------------------------------------QKLAIEAIK--DQAFIGEC  277 (363)
T ss_dssp             -------------------------------------------------------------HHHHHHHHH--CHHHHHHH
T ss_pred             -------------------------------------------------------------HHHHHHHhc--CHHHHHHH
Confidence                                                                         111112222  11456777


Q ss_pred             HHHHHHHHHHHHHHhhcCCCeEEeccCCceeeEEEEeeccCCCccccchhhhhhhhhhhHHHHHHHHhCCcEEEEeeecC
Q psy14299        320 VDNAVDCSRYFLSQISQRPGFRLVIPEFQCTNICFWFIPVSLRDKVEDETWWSTLSKVAPRIKEKLVLGGTLMIGYQPLQ  399 (448)
Q Consensus       320 ~~~~~~l~~~~~~~L~~~pg~~l~~~~~~~~~v~f~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~L~~~g~~~~~~~~~~  399 (448)
                      .++..++++++.+.|++++|++++  ++..+.+.+.+ +.  +               ..++.+.|.++| +.+.++...
T Consensus       278 ~~~~~~~~~~l~~~l~~~~g~~~~--~~~~~~~~~~~-~~--~---------------~~~~~~~l~~~g-i~v~~g~~~  336 (363)
T 3ffh_A          278 RTSNANGIKQYEAFAKRFEKVKLY--PANGNFVLIDL-GI--E---------------AGTIFSYLEKNG-YITRSGAAL  336 (363)
T ss_dssp             HHHHHHHHHHHHHHHHHCTTCEEC--CCCSSEEEEEC-SS--C---------------HHHHHHHHHHTT-EECEETTTT
T ss_pred             HHHHHHHHHHHHHHHhhCCCceEC--CCCCeEEEEEC-CC--C---------------HHHHHHHHHHCC-eEEEeCccC
Confidence            888899999999999997799985  34444444433 11  1               237888999998 555554433


Q ss_pred             CcccccEEEEEecCCCCCCHHHHHHHHHHHHHH
Q psy14299        400 HRNLHNFFRLVTTCHPASSRQDMDYAIDQIELR  432 (448)
Q Consensus       400 g~~~~~~lRis~~~~~~~t~edid~l~~al~~~  432 (448)
                      +.  ++++|+++  +   +++|+++++++|+++
T Consensus       337 ~~--~~~iRis~--~---~~~~i~~~~~~l~~~  362 (363)
T 3ffh_A          337 GF--PTAVRITI--G---KEEDNSAVIALLEKL  362 (363)
T ss_dssp             TC--TTEEEEEC--C---CHHHHHHHHHHHHHH
T ss_pred             CC--CCeEEEEC--C---CHHHHHHHHHHHHHh
Confidence            32  47999998  3   899999999999875

>3euc_A Histidinol-phosphate aminotransferase 2; YP_297314.1, structur genomics, joint center for structural genomics, JCSG; HET: MSE; 2.05A {Ralstonia eutropha JMP134} SCOP: c.67.1.0

Probab=99.88  E-value=3.1e-21  Score=192.69  Aligned_cols=274  Identities=11%  Similarity=0.051  Sum_probs=188.6

Q ss_pred             cEEEeCcHHHHHHHHHHHHHHhcCCcccccCCCCCCCeEEEecCCCchHHHHHHHHhCCCCCcEEEEecCCCCCcCHHHH
Q psy14299          4 KPFLLPGGSISNMYSICLARYRLDPDTKRKGLSHLPPLCMFTSEDSHYSMLKAAHWLGIGMDNVIRVKTNERGQMICSFL   83 (448)
Q Consensus         4 ~g~~t~ggT~an~~al~~a~~~~~~~~~~~G~~~~~~~~Vl~~~~~H~s~~~~~~~~g~~~~~v~~v~~~~~g~id~e~L   83 (448)
                      ..++|+|||+++..++.+...              +++.|+++...|.++...++..|.   +++.+|.++++.+|+++|
T Consensus        87 ~i~~~~g~t~a~~~~~~~~~~--------------~gd~Vl~~~~~~~~~~~~~~~~g~---~~~~v~~~~~~~~d~~~l  149 (367)
T 3euc_A           87 EVLLGNGSDEIISMLALAAAR--------------PGAKVMAPVPGFVMYAMSAQFAGL---EFVGVPLRADFTLDRGAM  149 (367)
T ss_dssp             EEEEEEHHHHHHHHHHHHTCC--------------TTCEEEEEESCSCCSCHHHHTTTC---EEEEEECCTTSCCCHHHH
T ss_pred             eEEEcCCHHHHHHHHHHHHcC--------------CCCEEEEcCCCHHHHHHHHHHcCC---eEEEecCCCCCCCCHHHH
Confidence            678999999999888776532              567788899999999999998888   799999998999999999


Q ss_pred             HHHHHHhhhcCCCcEEEEEeccCCcccccc---CHHHHHHHHHHc--CCEEEEecccccccccccchhhhhcCCCCccEE
Q psy14299         84 EQTIQTSLAEKKIPLFVNATAGTTVLGAFD---PLDEIATVCEKY--DLWMHVDACWGGSLIFSEKYSFVLKGINRANSV  158 (448)
Q Consensus        84 e~~l~~~~~~~~~~~lVv~~~~~t~tG~~~---~l~~I~~ia~~~--g~~l~VD~A~~~~~~~~~~~~~~~~~~~~aD~~  158 (448)
                      ++++++.     ++++|++++++|++|.+.   ++++|+++|++|  |+++++|++|+.....  .....+.. ...+++
T Consensus       150 ~~~l~~~-----~~~~v~~~~~~nptG~~~~~~~l~~i~~~~~~~~~~~~li~De~~~~~~~~--~~~~~~~~-~~~~i~  221 (367)
T 3euc_A          150 LAAMAEH-----QPAIVYLAYPNNPTGNLFDAADMEAIVRAAQGSVCRSLVVVDEAYQPFAQE--SWMSRLTD-FGNLLV  221 (367)
T ss_dssp             HHHHHHH-----CCSEEEEESSCTTTCCCCCHHHHHHHHHHTBTTSCBCEEEEECTTCCSSSC--CSGGGGGT-CTTEEE
T ss_pred             HHHhhcc-----CCCEEEEcCCCCCCCCCCCHHHHHHHHHhhhhcCCCcEEEEeCcchhhccc--chHHHHhh-CCCEEE
Confidence            9999762     477999999999999884   578888889999  9999999998864321  11111111 134578


Q ss_pred             EECCccccCCCCceEEEEEeccchhhhhccCCcccccccCcccccccCCCCCcccCCCCchhHHHHHHHHHhChHHHHHH
Q psy14299        159 SWNPHKMLGAPLQCSILLIKEKGLLHQANATAATYLFQQDKFYDVSFDTGDKSVQCGRKVDAFKLWLMWKARGNLGFRHF  238 (448)
Q Consensus       159 ~~s~hK~l~~P~g~G~l~vr~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~g~~~~  238 (448)
                      +.+++|++.....+|+++.+ +++..........|                 +      ...+.                
T Consensus       222 ~~s~sK~~~~G~r~G~~~~~-~~~~~~~~~~~~~~-----------------~------~~~~~----------------  261 (367)
T 3euc_A          222 MRTVSKLGLAGIRLGYVAGD-PQWLEQLDKVRPPY-----------------N------VNVLT----------------  261 (367)
T ss_dssp             EEECCCTTSCSCCEEEEEEC-HHHHHHHGGGCCSS-----------------C------CCHHH----------------
T ss_pred             EecchhhcccccCceeeeeC-HHHHHHHHHhCCCC-----------------C------CCHHH----------------
Confidence            88999993333456777764 34433322111100                 0      00111                


Q ss_pred             HHHhhhhccCCCccchhhhhhhhhhhhhhhhhhhhhhhccccccccccCCCCCccccccchhhHHHHHHHHHhcCccHHH
Q psy14299        239 VDNAVDCSRGSMTFSTLLCFDLQGLLHQANATAATYLFQQDKFYDVSFDTGDKSVQCGRKVDAFKLWLMWKARGNLGFRH  318 (448)
Q Consensus       239 i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~  318 (448)
                                                                                    +..+..+++.  .+++++
T Consensus       262 --------------------------------------------------------------~~a~~~~l~~--~~~~~~  277 (367)
T 3euc_A          262 --------------------------------------------------------------EATALFALEH--VAVLDE  277 (367)
T ss_dssp             --------------------------------------------------------------HHHHHHHHTT--HHHHHH
T ss_pred             --------------------------------------------------------------HHHHHHHhcC--HHHHHH
Confidence                                                                          1111112222  234667


Q ss_pred             HHHHHHHHHHHHHHHhhcCCCeEEeccCCceeeEEEEeeccCCCccccchhhhhhhhhhhHHHHHHHHhCCcEEEEeeec
Q psy14299        319 FVDNAVDCSRYFLSQISQRPGFRLVIPEFQCTNICFWFIPVSLRDKVEDETWWSTLSKVAPRIKEKLVLGGTLMIGYQPL  398 (448)
Q Consensus       319 ~~~~~~~l~~~~~~~L~~~pg~~l~~~~~~~~~v~f~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~L~~~g~~~~~~~~~  398 (448)
                      +.++..++++++.+.|+++||+++.  ++....+.+.+ +   +               ..++.+.|.++| +.+.+...
T Consensus       278 ~~~~~~~~~~~l~~~l~~~~g~~~~--~~~~~~~~~~~-~---~---------------~~~l~~~l~~~g-i~v~~~~~  335 (367)
T 3euc_A          278 QAAQLRAERSRVAEGMAAHGGVTVF--PSAANFLLARV-P---D---------------AAQTFDRLLARK-VLIKNVSK  335 (367)
T ss_dssp             HHHHHHHHHHHHHHHHHTSTTCEEC--CCSSSEEEEEC-S---C---------------HHHHHHHHHTTT-EECEECGG
T ss_pred             HHHHHHHHHHHHHHHHHhCCCcEEC--CCCCeEEEEEC-C---C---------------HHHHHHHHHHCC-eEEEECCc
Confidence            7888889999999999999999964  44444444433 1   1               136788898888 55554433


Q ss_pred             CCcccccEEEEEecCCCCCCHHHHHHHHHHHHHHH
Q psy14299        399 QHRNLHNFFRLVTTCHPASSRQDMDYAIDQIELRG  433 (448)
Q Consensus       399 ~g~~~~~~lRis~~~~~~~t~edid~l~~al~~~~  433 (448)
                      .+...++++|+++  +   +++|+++++++|+++.
T Consensus       336 ~~~~~~~~iRis~--~---~~~~i~~~~~~l~~~l  365 (367)
T 3euc_A          336 MHPLLANCLRVTV--S---TPEENAQFLEAFAASL  365 (367)
T ss_dssp             GCGGGTTEEEEEC--C---CHHHHHHHHHHHHHHT
T ss_pred             cCCCCCCEEEEec--C---CHHHHHHHHHHHHHHh
Confidence            2222347999998  3   8999999999999865

>3frk_A QDTB; aminotransferase, sugar-modification, natural porduct; HET: TQP; 2.15A {Thermoanaerobacteriumthermosaccharolyticum}

Probab=99.88  E-value=7.4e-22  Score=198.00  Aligned_cols=149  Identities=16%  Similarity=0.152  Sum_probs=117.2

Q ss_pred             cEEEeCcHHHHHHHHHHHHHHhcCCcccccCCCCCCCeEEEecCCCchHHHHHHHHhCCCCCcEEEEecC-CCCCcCHHH
Q psy14299          4 KPFLLPGGSISNMYSICLARYRLDPDTKRKGLSHLPPLCMFTSEDSHYSMLKAAHWLGIGMDNVIRVKTN-ERGQMICSF   82 (448)
Q Consensus         4 ~g~~t~ggT~an~~al~~a~~~~~~~~~~~G~~~~~~~~Vl~~~~~H~s~~~~~~~~g~~~~~v~~v~~~-~~g~id~e~   82 (448)
                      .+++|+|||+|+..++.++..             .+++.|+++..+|.++..+++..|.   +++.++.+ +++.+|+++
T Consensus        53 ~~i~~~sgt~al~~~l~~l~~-------------~~gd~Vi~~~~~~~~~~~~~~~~g~---~~~~~~~~~~~~~~d~~~  116 (373)
T 3frk_A           53 YCIGCGNGLDALHLILKGYDI-------------GFGDEVIVPSNTFIATALAVSYTGA---KPIFVEPDIRTYNIDPSL  116 (373)
T ss_dssp             EEEEESCHHHHHHHHHHHTTC-------------CTTCEEEEETTSCTHHHHHHHHHSC---EEEEECEETTTTEECGGG
T ss_pred             eEEEeCCHHHHHHHHHHHcCC-------------CCcCEEEECCCCcHHHHHHHHHcCC---EEEEEeccccccCcCHHH
Confidence            579999999999988876522             2667899999999999999999998   78889887 568999999


Q ss_pred             HHHHHHHhhhcCCCcEEEEEeccCCccccccCHHHHHHHHHHcCCEEEEecccccccccccchhhhhcCCCCccEEEEC-
Q psy14299         83 LEQTIQTSLAEKKIPLFVNATAGTTVLGAFDPLDEIATVCEKYDLWMHVDACWGGSLIFSEKYSFVLKGINRANSVSWN-  161 (448)
Q Consensus        83 Le~~l~~~~~~~~~~~lVv~~~~~t~tG~~~~l~~I~~ia~~~g~~l~VD~A~~~~~~~~~~~~~~~~~~~~aD~~~~s-  161 (448)
                      |++++++      ++++|+   +++++|...|+++|.++|++||+++|+|++|+.+...... .  . + ...|++++| 
T Consensus       117 l~~~l~~------~~~~v~---~~n~~G~~~~l~~i~~l~~~~~~~li~D~a~~~g~~~~~~-~--~-~-~~~d~~~~S~  182 (373)
T 3frk_A          117 IESAITE------KTKAII---AVHLYGQPADMDEIKRIAKKYNLKLIEDAAQAHGSLYKGM-K--V-G-SLGDAAGFSF  182 (373)
T ss_dssp             TGGGCCT------TEEEEE---EECCTTCCCCHHHHHHHHHHHTCEEEEECTTCTTCEETTE-E--T-T-SSSSEEEEEC
T ss_pred             HHHhcCC------CCeEEE---EECCCcCcccHHHHHHHHHHcCCEEEEECCcccCCEECCE-e--c-c-ccccEEEEeC
Confidence            9998854      467776   4568999999999999999999999999999987652111 1  1 1 125788877 


Q ss_pred             -CccccCCCCceEEEEEeccch
Q psy14299        162 -PHKMLGAPLQCSILLIKEKGL  182 (448)
Q Consensus       162 -~hK~l~~P~g~G~l~vr~~~~  182 (448)
                       .||+++++...|+++.+++.+
T Consensus       183 ~~~K~l~~~g~gg~~~~~~~~~  204 (373)
T 3frk_A          183 YPAKNLGSLGDGGAVVTNDKDL  204 (373)
T ss_dssp             CTTSSSCCSSSCEEEEESCHHH
T ss_pred             cCCCccCccceeEEEEeCCHHH
Confidence             679998745566666655443

>3l8a_A METC, putative aminotransferase, probable beta-cystathi; beta-cystathionase, lyase; HET: PLP; 1.54A {Streptococcus mutans}

Probab=99.87  E-value=5.2e-21  Score=195.31  Aligned_cols=288  Identities=11%  Similarity=0.089  Sum_probs=194.2

Q ss_pred             cEEEeCcHHHHHHHHHHHHHHhcCCcccccCCCCCCCeEEEecCCCchHHHHHHHHhCCCCCcEEEEecC-CC--CCcCH
Q psy14299          4 KPFLLPGGSISNMYSICLARYRLDPDTKRKGLSHLPPLCMFTSEDSHYSMLKAAHWLGIGMDNVIRVKTN-ER--GQMIC   80 (448)
Q Consensus         4 ~g~~t~ggT~an~~al~~a~~~~~~~~~~~G~~~~~~~~Vl~~~~~H~s~~~~~~~~g~~~~~v~~v~~~-~~--g~id~   80 (448)
                      ..+||+|||+||..++.+++.              +++.|++....|+++...++..|.   +++.+|.+ .+  +.+|+
T Consensus       121 ~v~~~~g~~ea~~~a~~~~~~--------------~gd~Vi~~~~~y~~~~~~~~~~g~---~~~~~~~~~~~~~~~~d~  183 (421)
T 3l8a_A          121 DILFIDGVVPAISIALQAFSE--------------KGDAVLINSPVYYPFARTIRLNDH---RLVENSLQIINGRFEIDF  183 (421)
T ss_dssp             GEEEESCHHHHHHHHHHHHSC--------------TEEEEEEEESCCHHHHHHHHHTTE---EEEEEECEEETTEEECCH
T ss_pred             HEEEcCCHHHHHHHHHHHhcC--------------CCCEEEECCCCcHHHHHHHHHCCC---EEEeccccccCCCeeeCH
Confidence            479999999999999887643              567788999999999999998888   78888875 33  37899


Q ss_pred             HHHHHHHHHhhhcCCCcEEEEEeccCCccccc---cCHHHHHHHHHHcCCEEEEecccccccccccchhhh--h-cCCCC
Q psy14299         81 SFLEQTIQTSLAEKKIPLFVNATAGTTVLGAF---DPLDEIATVCEKYDLWMHVDACWGGSLIFSEKYSFV--L-KGINR  154 (448)
Q Consensus        81 e~Le~~l~~~~~~~~~~~lVv~~~~~t~tG~~---~~l~~I~~ia~~~g~~l~VD~A~~~~~~~~~~~~~~--~-~~~~~  154 (448)
                      ++|++++++     .++++|++++++|++|.+   .++++|.++|++||+++++|++|+............  + .....
T Consensus       184 ~~le~~i~~-----~~~~~vil~~p~nptG~~~~~~~l~~l~~l~~~~~~~li~De~~~~~~~~g~~~~~~~~~~~~~~~  258 (421)
T 3l8a_A          184 EQLEKDIID-----NNVKIYLLCSPHNPGGRVWDNDDLIKIAELCKKHGVILVSDEIHQDLALFGNTHHSLNTLDASYKD  258 (421)
T ss_dssp             HHHHHHHHH-----TTEEEEEEESSBTTTTBCCCHHHHHHHHHHHHHHTCEEEEECTTTTCBCTTCCCCCGGGSCTTGGG
T ss_pred             HHHHHHhhc-----cCCeEEEECCCCCCCCCcCCHHHHHHHHHHHHHcCCEEEEEccccccccCCCCCccHHHcCchhcC
Confidence            999999974     258899999999999988   789999999999999999999998654321100000  0 01113


Q ss_pred             ccEEEECCccccCCC-CceEEEEEeccchhhhhccCCcccccccCcccccccCCCCCcccCCCCchhHHHHHHHHHhChH
Q psy14299        155 ANSVSWNPHKMLGAP-LQCSILLIKEKGLLHQANATAATYLFQQDKFYDVSFDTGDKSVQCGRKVDAFKLWLMWKARGNL  233 (448)
Q Consensus       155 aD~~~~s~hK~l~~P-~g~G~l~vr~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~  233 (448)
                      .+..+.+++|+++.| ..+|+++++++++..........+.                                       
T Consensus       259 ~~i~~~s~sK~~g~~G~~~G~~~~~~~~l~~~~~~~~~~~~---------------------------------------  299 (421)
T 3l8a_A          259 FTIILSSATKTFNIAGTKNSFAIIQNESLRRKFQYRQLANN---------------------------------------  299 (421)
T ss_dssp             TEEEEECSHHHHTCGGGCCEEEECCSHHHHHHHHHHHHHTT---------------------------------------
T ss_pred             cEEEEEeChhhccCchhheEeEEcCCHHHHHHHHHHHHhcc---------------------------------------
Confidence            458889999999743 4568887764444332211000000                                       


Q ss_pred             HHHHHHHHhhhhccCCCccchhhhhhhhhhhhhhhhhhhhhhhccccccccccCCCCCccccccchhhHHHHHHHHHhcC
Q psy14299        234 GFRHFVDNAVDCSRGSMTFSTLLCFDLQGLLHQANATAATYLFQQDKFYDVSFDTGDKSVQCGRKVDAFKLWLMWKARGN  313 (448)
Q Consensus       234 g~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  313 (448)
                                                                                 ..+++.+.+.++..+++. ..
T Consensus       300 -----------------------------------------------------------~~~~n~~~~~a~~aal~~-~~  319 (421)
T 3l8a_A          300 -----------------------------------------------------------QHEVPTVGMIATQAAFQY-GK  319 (421)
T ss_dssp             -----------------------------------------------------------CSCCCHHHHHHHHHHHHH-CH
T ss_pred             -----------------------------------------------------------cCCCCHHHHHHHHHHHhc-cH
Confidence                                                                       000111112222223332 33


Q ss_pred             ccHHHHHHHHHHHHHHHHHHhhcCCCeEEeccCCceeeEE-EEeeccCCCccccchhhhhhhhhhhHHHHHHHHhC-CcE
Q psy14299        314 LGFRHFVDNAVDCSRYFLSQISQRPGFRLVIPEFQCTNIC-FWFIPVSLRDKVEDETWWSTLSKVAPRIKEKLVLG-GTL  391 (448)
Q Consensus       314 ~G~~~~~~~~~~l~~~~~~~L~~~pg~~l~~~~~~~~~v~-f~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~L~~~-g~~  391 (448)
                      ++++++.++..++++++.+.|+++|+++++  .+..+.+. +.+...+.+               ..++.+.|.++ | +
T Consensus       320 ~~~~~~~~~~~~~~~~l~~~L~~~~~i~~~--~~~~~~~~~v~~~~~~~~---------------~~~l~~~l~~~~g-i  381 (421)
T 3l8a_A          320 PWLEELKTVIEGNIKLVIKELEAKTKIKVM--EPEGTYLVWLDFSAYAIA---------------QPQLSEKLQNEAK-V  381 (421)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHCSCEEE--CCSBSSEEEEECGGGTCC---------------TTHHHHHHHHTTC-E
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhCCCceEe--CCCeeEEEEEeccccCCC---------------HHHHHHHHHHhCC-E
Confidence            456778888899999999999988899986  34444444 333221222               12678888755 7 5


Q ss_pred             EEEeeecCCcccccEEEEEecCCCCCCHHHHHHHHHHHHHHHH
Q psy14299        392 MIGYQPLQHRNLHNFFRLVTTCHPASSRQDMDYAIDQIELRGA  434 (448)
Q Consensus       392 ~~~~~~~~g~~~~~~lRis~~~~~~~t~edid~l~~al~~~~~  434 (448)
                      .+.++...+...++++|+++.    +++++++++++.|+++.+
T Consensus       382 ~v~~g~~f~~~~~~~iRi~~~----~~~~~i~~~l~~l~~~l~  420 (421)
T 3l8a_A          382 VLNDGAHFGKEGKYFARLNVA----TPKNTVQEALSRIISVFG  420 (421)
T ss_dssp             ECEEGGGGCGGGTTEEEEECC----SCHHHHHHHHHHHHHHC-
T ss_pred             EEECchhhCCCCCCEEEEEec----CCHHHHHHHHHHHHHHHh
Confidence            565544333323489999993    589999999999988753

>4dq6_A Putative pyridoxal phosphate-dependent transferas; structural genomics, niaid, national institute of allergy AN infectious diseases; HET: PLP; 1.50A {Clostridium difficile} PDB: 4dgt_A*

Probab=99.87  E-value=6.2e-21  Score=191.68  Aligned_cols=284  Identities=12%  Similarity=0.081  Sum_probs=190.8

Q ss_pred             cEEEeCcHHHHHHHHHHHHHHhcCCcccccCCCCCCCeEEEecCCCchHHHHHHHHhCCCCCcEEEEecC--CC--CCcC
Q psy14299          4 KPFLLPGGSISNMYSICLARYRLDPDTKRKGLSHLPPLCMFTSEDSHYSMLKAAHWLGIGMDNVIRVKTN--ER--GQMI   79 (448)
Q Consensus         4 ~g~~t~ggT~an~~al~~a~~~~~~~~~~~G~~~~~~~~Vl~~~~~H~s~~~~~~~~g~~~~~v~~v~~~--~~--g~id   79 (448)
                      ..++|+|||+++..++.++..              +++.|+++...|.++...++..|.   +++.+|.+  .+  +.+|
T Consensus        92 ~v~~~~g~~~a~~~~~~~~~~--------------~gd~vl~~~~~~~~~~~~~~~~g~---~~~~~~~~~~~~~~~~~d  154 (391)
T 4dq6_A           92 WLIYSPGVIPAISLLINELTK--------------ANDKIMIQEPVYSPFNSVVKNNNR---ELIISPLQKLENGNYIMD  154 (391)
T ss_dssp             GEEEESCHHHHHHHHHHHHSC--------------TTCEEEECSSCCTHHHHHHHHTTC---EEEECCCEECTTSCEECC
T ss_pred             HeEEcCChHHHHHHHHHHhCC--------------CCCEEEEcCCCCHHHHHHHHHcCC---eEEeeeeeecCCCceEee
Confidence            478999999999888877643              567799999999999999999998   78888876  33  3589


Q ss_pred             HHHHHHHHHHhhhcCCCcEEEEEeccCCccccc---cCHHHHHHHHHHcCCEEEEecccccccccccchhhhhcCCC---
Q psy14299         80 CSFLEQTIQTSLAEKKIPLFVNATAGTTVLGAF---DPLDEIATVCEKYDLWMHVDACWGGSLIFSEKYSFVLKGIN---  153 (448)
Q Consensus        80 ~e~Le~~l~~~~~~~~~~~lVv~~~~~t~tG~~---~~l~~I~~ia~~~g~~l~VD~A~~~~~~~~~~~~~~~~~~~---  153 (448)
                      +++|++++++       +++|++++++|++|.+   .++++|.++|++||+++++|++|+.......... .+..+.   
T Consensus       155 ~~~l~~~l~~-------~~~v~i~~p~nptG~~~~~~~l~~i~~~~~~~~~~li~De~~~~~~~~g~~~~-~~~~~~~~~  226 (391)
T 4dq6_A          155 YEDIENKIKD-------VKLFILCNPHNPVGRVWTKDELKKLGDICLKHNVKIISDEIHSDIILKKHKHI-PMASISKEF  226 (391)
T ss_dssp             HHHHHHHCTT-------EEEEEEESSBTTTTBCCCHHHHHHHHHHHHHTTCEEEEECTTTTCBCTTCCCC-CGGGSCHHH
T ss_pred             HHHHHHHhhc-------CCEEEEECCCCCCCcCcCHHHHHHHHHHHHHcCCEEEeeccccccccCCCCcc-CHHHcCccc
Confidence            9999999853       7899999999999999   7799999999999999999999987543211000 011110   


Q ss_pred             -CccEEEECCccccCCC-CceEEEEEeccchhhhhccCCcccccccCcccccccCCCCCcccCCCCchhHHHHHHHHHhC
Q psy14299        154 -RANSVSWNPHKMLGAP-LQCSILLIKEKGLLHQANATAATYLFQQDKFYDVSFDTGDKSVQCGRKVDAFKLWLMWKARG  231 (448)
Q Consensus       154 -~aD~~~~s~hK~l~~P-~g~G~l~vr~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g  231 (448)
                       ...+++.++||+++.| ..+|+++.+++.+..........+..                                    
T Consensus       227 ~~~~i~~~s~sK~~g~~G~r~G~~~~~~~~~~~~~~~~~~~~~~------------------------------------  270 (391)
T 4dq6_A          227 EKNTITCMAPTKTFNIAGLQSSYVVLPDEKDYKLLDDAFTRIDI------------------------------------  270 (391)
T ss_dssp             HHTEEEEECSHHHHTCGGGCCEEEECCSHHHHHHHHHHHHHTTC------------------------------------
T ss_pred             cCcEEEEEechhhccCcccceEEEEeCCHHHHHHHHHHHHhhcC------------------------------------
Confidence             1237788999999744 45777776653433322110000000                                    


Q ss_pred             hHHHHHHHHHhhhhccCCCccchhhhhhhhhhhhhhhhhhhhhhhccccccccccCCCCCccccccchhhHHHHHHHHHh
Q psy14299        232 NLGFRHFVDNAVDCSRGSMTFSTLLCFDLQGLLHQANATAATYLFQQDKFYDVSFDTGDKSVQCGRKVDAFKLWLMWKAR  311 (448)
Q Consensus       232 ~~g~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  311 (448)
                                                                                    .+.+.+.+..+..+++. 
T Consensus       271 --------------------------------------------------------------~~~~~~~~~a~~~~l~~-  287 (391)
T 4dq6_A          271 --------------------------------------------------------------KRNNCFSLVATEASYNN-  287 (391)
T ss_dssp             --------------------------------------------------------------CCCCHHHHHHHHHHHHH-
T ss_pred             --------------------------------------------------------------CCCCHHHHHHHHHHHhc-
Confidence                                                                          00000111112222222 


Q ss_pred             cCccHHHHHHHHHHHHHHHHHHhhc-CCCeEEeccCCceeeEE-EEeeccCCCccccchhhhhhhhhhhHHHHHHHHhC-
Q psy14299        312 GNLGFRHFVDNAVDCSRYFLSQISQ-RPGFRLVIPEFQCTNIC-FWFIPVSLRDKVEDETWWSTLSKVAPRIKEKLVLG-  388 (448)
Q Consensus       312 ~~~G~~~~~~~~~~l~~~~~~~L~~-~pg~~l~~~~~~~~~v~-f~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~L~~~-  388 (448)
                      ..+.++++.++..++++++.+.|++ +|+++++  ++..+.+. +.+...+.+               ..++.+.|.++ 
T Consensus       288 ~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~--~~~~~~~~~~~~~~~~~~---------------~~~~~~~l~~~~  350 (391)
T 4dq6_A          288 GESWLESFLEYLESNIDFAIKYINENMPKLKVR--KPEGTYLLWVDFSALGLS---------------DEELESILVQKG  350 (391)
T ss_dssp             CHHHHHHHHHHHHHHHHHHHHHHHHHCTTSEEC--CCSBSSEEEEECGGGCCC---------------HHHHHHHHHHTT
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHhhCCCCEec--CCCccEEEEEEhhhcCCC---------------HHHHHHHHHHhC
Confidence            2234667788888999999999998 7999986  44445554 333211221               23788899988 


Q ss_pred             CcEEEEeeecCCcccccEEEEEecCCCCCCHHHHHHHHHHHHHHH
Q psy14299        389 GTLMIGYQPLQHRNLHNFFRLVTTCHPASSRQDMDYAIDQIELRG  433 (448)
Q Consensus       389 g~~~~~~~~~~g~~~~~~lRis~~~~~~~t~edid~l~~al~~~~  433 (448)
                      | +.+.++...+...++++|+++  +  ++++|++++++.|+++.
T Consensus       351 g-i~v~~g~~~~~~~~~~iRis~--~--~~~~~i~~~l~~l~~~l  390 (391)
T 4dq6_A          351 K-VALNQGNSFGIGGSGYQRINL--A--CPRSMLEEALIRIKNAI  390 (391)
T ss_dssp             C-EECEEGGGGCTTCTTEEEEEC--C--SCHHHHHHHHHHHHHHH
T ss_pred             C-EEeeCchhhCCCCCCeEEEEE--c--CCHHHHHHHHHHHHHHh
Confidence            8 555554333322247999999  3  58999999999998764

>2gb3_A Aspartate aminotransferase; TM1698, structural genomics, PSI structure initiative, joint center for structural genomics; HET: LLP; 2.50A {Thermotoga maritima} SCOP: c.67.1.1

Probab=99.87  E-value=3.9e-21  Score=195.35  Aligned_cols=284  Identities=14%  Similarity=0.047  Sum_probs=192.5

Q ss_pred             cEEEeCcHHHHHHHHHHHHHHhcCCcccccCCCCCCCeEEEecCCCchHHHHHHHHhCCCCCcEEEEecCC--CCCcCHH
Q psy14299          4 KPFLLPGGSISNMYSICLARYRLDPDTKRKGLSHLPPLCMFTSEDSHYSMLKAAHWLGIGMDNVIRVKTNE--RGQMICS   81 (448)
Q Consensus         4 ~g~~t~ggT~an~~al~~a~~~~~~~~~~~G~~~~~~~~Vl~~~~~H~s~~~~~~~~g~~~~~v~~v~~~~--~g~id~e   81 (448)
                      .+++|+|||+++..++.++..              +++.|+++..+|.++...++..|.   +++.+|.++  +..+ ++
T Consensus       104 ~v~~~~g~t~a~~~~~~~~~~--------------~gd~Vl~~~~~~~~~~~~~~~~g~---~~~~v~~~~~~~~~~-~~  165 (409)
T 2gb3_A          104 NVLVTNGGSEAILFSFAVIAN--------------PGDEILVLEPFYANYNAFAKIAGV---KLIPVTRRMEEGFAI-PQ  165 (409)
T ss_dssp             GEEEESHHHHHHHHHHHHHCC--------------TTCEEEEEESCCTHHHHHHHHHTC---EEEEEECCGGGTSCC-CT
T ss_pred             HEEEeCCHHHHHHHHHHHhCC--------------CCCEEEEcCCCchhHHHHHHHcCC---EEEEeccCCCCCCcc-HH
Confidence            579999999999998877632              567789999999999999999998   788999875  3344 88


Q ss_pred             HHHHHHHHhhhcCCCcEEEEEeccCCcccccc---CHHHHHHHHHHcCCEEEEecccccccccccchhhhhcCCCCccEE
Q psy14299         82 FLEQTIQTSLAEKKIPLFVNATAGTTVLGAFD---PLDEIATVCEKYDLWMHVDACWGGSLIFSEKYSFVLKGINRANSV  158 (448)
Q Consensus        82 ~Le~~l~~~~~~~~~~~lVv~~~~~t~tG~~~---~l~~I~~ia~~~g~~l~VD~A~~~~~~~~~~~~~~~~~~~~aD~~  158 (448)
                      +|++++++      ++++|++++++|++|.+.   ++++|.++|++||+++++|++|+.+......... +.++...|++
T Consensus       166 ~l~~~l~~------~~~~v~~~~p~nptG~~~~~~~l~~i~~~~~~~~~~li~Dea~~~~~~~~~~~~~-~~~~~~~~i~  238 (409)
T 2gb3_A          166 NLESFINE------RTKGIVLSNPCNPTGVVYGKDEMRYLVEIAERHGLFLIVDEVYSEIVFRGEFASA-LSIESDKVVV  238 (409)
T ss_dssp             TGGGGCCT------TEEEEEEESSCTTTCCCCCHHHHHHHHHHHHHTTCEEEEECTTTTCBCSSCCCCG-GGSCCTTEEE
T ss_pred             HHHHhhCc------CCeEEEECCCCCCCCCCcCHHHHHHHHHHHHHcCCEEEEECcccccccCCCCCCc-cccCCCCEEE
Confidence            88888753      478999999999999885   5899999999999999999999976542111111 2333357899


Q ss_pred             EECCccccCCCC-ceEEEEEeccchhhhhccCCcccccccCcccccccCCCCCcccCCCCchhHHHHHHHHHhChHHHHH
Q psy14299        159 SWNPHKMLGAPL-QCSILLIKEKGLLHQANATAATYLFQQDKFYDVSFDTGDKSVQCGRKVDAFKLWLMWKARGNLGFRH  237 (448)
Q Consensus       159 ~~s~hK~l~~P~-g~G~l~vr~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~g~~~  237 (448)
                      +.++||+++.|. .+|+++++++++..........+. .                                         
T Consensus       239 ~~s~sK~~g~~G~r~G~~~~~~~~l~~~l~~~~~~~~-~-----------------------------------------  276 (409)
T 2gb3_A          239 IDSVSKKFSACGARVGCLITRNEELISHAMKLAQGRL-A-----------------------------------------  276 (409)
T ss_dssp             EEESTTTTTCGGGCCEEEECSCHHHHHHHHHHHHHSC-C-----------------------------------------
T ss_pred             EecchhccCCccceEEEEEECcHHHHHHHHHHHhccC-C-----------------------------------------
Confidence            999999996432 378888765233332211000000 0                                         


Q ss_pred             HHHHhhhhccCCCccchhhhhhhhhhhhhhhhhhhhhhhccccccccccCCCCCccccccchhhHHHHHHHHHhcCccHH
Q psy14299        238 FVDNAVDCSRGSMTFSTLLCFDLQGLLHQANATAATYLFQQDKFYDVSFDTGDKSVQCGRKVDAFKLWLMWKARGNLGFR  317 (448)
Q Consensus       238 ~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~  317 (448)
                                                                                .+.+.+..+..+++. +..+++
T Consensus       277 ----------------------------------------------------------~~~~~~~a~~~~l~~-~~~~~~  297 (409)
T 2gb3_A          277 ----------------------------------------------------------PPLLEQIGSVGLLNL-DDSFFD  297 (409)
T ss_dssp             ----------------------------------------------------------CCHHHHHHHHHHHTC-CHHHHH
T ss_pred             ----------------------------------------------------------CCHHHHHHHHHHHhc-cHHHHH
Confidence                                                                      000001111112221 234567


Q ss_pred             HHHHHHHHHHHHHHHHhhcCCCeEE-eccCCceeeEEEEeeccCCCccccchhhhhhhhhhhHHHHHHHHhC------Cc
Q psy14299        318 HFVDNAVDCSRYFLSQISQRPGFRL-VIPEFQCTNICFWFIPVSLRDKVEDETWWSTLSKVAPRIKEKLVLG------GT  390 (448)
Q Consensus       318 ~~~~~~~~l~~~~~~~L~~~pg~~l-~~~~~~~~~v~f~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~L~~~------g~  390 (448)
                      ++.++..++++++.+.|+++ |+++ .  .+..+.+.+...+ +.+               ..++.+.|.++      | 
T Consensus       298 ~~~~~~~~~~~~l~~~L~~~-g~~~~~--~~~~~~~~~~~~~-~~~---------------~~~l~~~l~~~~~~~~~g-  357 (409)
T 2gb3_A          298 FVRETYRERVETVLKKLEEH-GLKRFT--KPSGAFYITAELP-VED---------------AEEFARWMLTDFNMDGET-  357 (409)
T ss_dssp             HHHHHHHHHHHHHHHHHHHT-TCCCBC--CCSBSSEEEEECS-SSC---------------HHHHHHHHHHSCCBTTEE-
T ss_pred             HHHHHHHHHHHHHHHHHHHc-Cceeee--CCCeeEEEEEEeC-CCC---------------HHHHHHHHHhccccccCc-
Confidence            77888889999999999998 8887 4  3444555442212 111               23688888877      7 


Q ss_pred             EEEEeeecCCc---ccccEEEEEecCCCCCCHHHHHHHHHHHHHHHHHhH
Q psy14299        391 LMIGYQPLQHR---NLHNFFRLVTTCHPASSRQDMDYAIDQIELRGAEVD  437 (448)
Q Consensus       391 ~~~~~~~~~g~---~~~~~lRis~~~~~~~t~edid~l~~al~~~~~~~~  437 (448)
                      +.+.++...+.   ..++++|+++  +  ++++|++++++.|+++.+++.
T Consensus       358 i~v~~g~~f~~~~~~~~~~iRis~--~--~~~e~i~~~~~~l~~~l~~~~  403 (409)
T 2gb3_A          358 TMVAPLRGFYLTPGLGKKEIRIAC--V--LEKDLLSRAIDVLMEGLKMFC  403 (409)
T ss_dssp             EECEEGGGGCSSTTTTSSEEEEEC--C--SCHHHHHHHHHHHHHHHHHHH
T ss_pred             EEEeCchHhCCCCCCCCCEEEEEe--C--CCHHHHHHHHHHHHHHHHHhh
Confidence            55554422211   1137999999  4  799999999999999987653

>1b9h_A AHBA synthase, protein (3-amino-5-hydroxybenzoic acid synthase); rifamycin biosynthesis (RIFD gene); HET: PLP; 2.00A {Amycolatopsis mediterranei} SCOP: c.67.1.4 PDB: 1b9i_A*

Probab=99.87  E-value=2e-20  Score=188.34  Aligned_cols=149  Identities=11%  Similarity=0.125  Sum_probs=116.1

Q ss_pred             EEEeCcHHHHHHHHHHHHHHhcCCcccccCCCCCCCeEEEecCCCchHHHHHHHHhCCCCCcEEEEecCCC-CCcCHHHH
Q psy14299          5 PFLLPGGSISNMYSICLARYRLDPDTKRKGLSHLPPLCMFTSEDSHYSMLKAAHWLGIGMDNVIRVKTNER-GQMICSFL   83 (448)
Q Consensus         5 g~~t~ggT~an~~al~~a~~~~~~~~~~~G~~~~~~~~Vl~~~~~H~s~~~~~~~~g~~~~~v~~v~~~~~-g~id~e~L   83 (448)
                      .+++++||+++.+++.++..             .+++.|+++..+|.++..+++..|.   +++.++++++ +.+|+++|
T Consensus        56 ~i~~~sGt~al~~~l~~l~~-------------~~gd~Vi~~~~~~~~~~~~~~~~g~---~~~~v~~~~~~~~~d~~~l  119 (388)
T 1b9h_A           56 ALAVTNGTHALELALQVMGV-------------GPGTEVIVPAFTFISSSQAAQRLGA---VTVPVDVDAATYNLDPEAV  119 (388)
T ss_dssp             EEEESCHHHHHHHHHHHTTC-------------CTTCEEEEESSSCTHHHHHHHHTTC---EEEEECBCTTTCCBCHHHH
T ss_pred             EEEeCCHHHHHHHHHHHcCC-------------CCcCEEEECCCccHHHHHHHHHcCC---EEEEEecCCCcCCCCHHHH
Confidence            46677779999888876521             1567899999999999999999998   7889998864 78999999


Q ss_pred             HHHHHHhhhcCCCcEEEEEeccCCccccccCHHHHHHHHHHcCCEEEEecccccccccccchhhhhcCCCCccEEEECCc
Q psy14299         84 EQTIQTSLAEKKIPLFVNATAGTTVLGAFDPLDEIATVCEKYDLWMHVDACWGGSLIFSEKYSFVLKGINRANSVSWNPH  163 (448)
Q Consensus        84 e~~l~~~~~~~~~~~lVv~~~~~t~tG~~~~l~~I~~ia~~~g~~l~VD~A~~~~~~~~~~~~~~~~~~~~aD~~~~s~h  163 (448)
                      ++++++      ++++|+   +++++|.+.|+++|.++|++||+++|+|++|+.+...... .  +..+..+++.+++.|
T Consensus       120 ~~~i~~------~~~~v~---~~n~tG~~~~l~~i~~la~~~~~~li~D~a~~~g~~~~~~-~--~~~~~~i~~~S~s~~  187 (388)
T 1b9h_A          120 AAAVTP------RTKVIM---PVHMAGLMADMDALAKISADTGVPLLQDAAHAHGARWQGK-R--VGELDSIATFSFQNG  187 (388)
T ss_dssp             HHHCCT------TEEEEC---CBCGGGCCCCHHHHHHHHHHHTCCBCEECTTCTTCEETTE-E--GGGSSSCEEEECCTT
T ss_pred             HHhcCc------CceEEE---EeCCccCcCCHHHHHHHHHHcCCEEEEecchhcCCccCCe-e--cccccceEEEEccCC
Confidence            999853      466666   7888999999999999999999999999999976543111 1  112223678888899


Q ss_pred             cccCCCCceEEEEEeccch
Q psy14299        164 KMLGAPLQCSILLIKEKGL  182 (448)
Q Consensus       164 K~l~~P~g~G~l~vr~~~~  182 (448)
                      |+++++. .|+++.+++.+
T Consensus       188 K~l~g~~-~G~~~~~~~~~  205 (388)
T 1b9h_A          188 KLMTAGE-GGAVVFPDGET  205 (388)
T ss_dssp             SSSCSSS-CEEEEECTTCH
T ss_pred             CcccCCC-eEEEEECCHHH
Confidence            9998764 57777766544

>2zc0_A Alanine glyoxylate transaminase; alanine:glyoxylate aminotransferase, archaea, thermococcus L transferase; HET: PMP; 2.30A {Thermococcus litoralis}

Probab=99.87  E-value=1.5e-20  Score=190.39  Aligned_cols=292  Identities=15%  Similarity=0.136  Sum_probs=188.8

Q ss_pred             cEEEeCcHHHHHHHHHHHHHHhcCCcccccCCCCCCCeEEEecCCCchHHHHHHHHhCCCCCcEEEEecCCCCCcCHHHH
Q psy14299          4 KPFLLPGGSISNMYSICLARYRLDPDTKRKGLSHLPPLCMFTSEDSHYSMLKAAHWLGIGMDNVIRVKTNERGQMICSFL   83 (448)
Q Consensus         4 ~g~~t~ggT~an~~al~~a~~~~~~~~~~~G~~~~~~~~Vl~~~~~H~s~~~~~~~~g~~~~~v~~v~~~~~g~id~e~L   83 (448)
                      .+++|+|||+++..++.+++.              +++.|+++..+|.++...++..|.   +++.+|.++++ +|+++|
T Consensus       100 ~v~~t~g~t~a~~~~~~~~~~--------------~gd~vl~~~p~~~~~~~~~~~~g~---~~~~v~~~~~~-~d~~~l  161 (407)
T 2zc0_A          100 NIVITIGGTGALDLLGRVLID--------------PGDVVITENPSYINTLLAFEQLGA---KIEGVPVDNDG-MRVDLL  161 (407)
T ss_dssp             GEEEESHHHHHHHHHHHHHCC--------------TTCEEEEEESCCHHHHHHHHTTTC---EEEEEEEETTE-ECHHHH
T ss_pred             eEEEecCHHHHHHHHHHHhcC--------------CCCEEEEeCCChHHHHHHHHHcCC---EEEEcccCCCC-CCHHHH
Confidence            578999999999998877643              556788899999999999988888   78889887765 999999


Q ss_pred             HHHHHHhhhcCCCcEEE-EEeccCCccccccCHH---HHHHHHHHcCCEEEEecccccccccccchhhhhcCC--CCccE
Q psy14299         84 EQTIQTSLAEKKIPLFV-NATAGTTVLGAFDPLD---EIATVCEKYDLWMHVDACWGGSLIFSEKYSFVLKGI--NRANS  157 (448)
Q Consensus        84 e~~l~~~~~~~~~~~lV-v~~~~~t~tG~~~~l~---~I~~ia~~~g~~l~VD~A~~~~~~~~~~~~~~~~~~--~~aD~  157 (448)
                      ++++++....+.++++| ++.+++|++|.+.|++   +|.++|++||+++|+|++|+.+........ .+..+  ...++
T Consensus       162 ~~~l~~~~~~~~~~~~v~~~~~~~nptG~~~~~~~l~~i~~~~~~~~~~li~De~~~~~~~~~~~~~-~~~~~~~~~~~i  240 (407)
T 2zc0_A          162 EEKIKELKAKGQKVKLIYTIPTGQNPMGVTMSMERRKALLEIASKYDLLIIEDTAYNFMRYEGGDIV-PLKALDNEGRVI  240 (407)
T ss_dssp             HHHHHHHHHTTCCEEEEEECCSSCTTTCCCCCHHHHHHHHHHHHHHTCEEEEECTTTTSBSSCSSCC-CGGGGCSSCCEE
T ss_pred             HHHHHhhhcccCCceEEEECCCCCCCCCcCCCHHHHHHHHHHHHHcCCEEEEECCCcccccCCCCCC-ChhhcCCCCCEE
Confidence            99997322122357776 5678899999999887   999999999999999999987654211100 01111  12346


Q ss_pred             EEECCccccCCCC-ceEEEEEeccchhhhhccCCcccccccCcccccccCCCCCcccCCCCchhHHHHHHHHHhChHHHH
Q psy14299        158 VSWNPHKMLGAPL-QCSILLIKEKGLLHQANATAATYLFQQDKFYDVSFDTGDKSVQCGRKVDAFKLWLMWKARGNLGFR  236 (448)
Q Consensus       158 ~~~s~hK~l~~P~-g~G~l~vr~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~g~~  236 (448)
                      ++.+++|+++ |. .+|+++++ +++..........+.               +      ....+..++           
T Consensus       241 ~~~s~sK~~~-~G~r~G~~~~~-~~~~~~~~~~~~~~~---------------~------~~~~~~~~~-----------  286 (407)
T 2zc0_A          241 VAGTLSKVLG-TGFRIGWIIAE-GEILKKVLMQKQPID---------------F------CAPAISQYI-----------  286 (407)
T ss_dssp             EEEESTTTTC-TTSCCEEEECC-HHHHHHHHHHHTTTT---------------S------SSCHHHHHH-----------
T ss_pred             EEcccccccC-CCcceEEEecC-HHHHHHHHHHHHhhc---------------C------CCCHHHHHH-----------
Confidence            7788999998 53 47888875 343332211000000               0      000111110           


Q ss_pred             HHHHHhhhhccCCCccchhhhhhhhhhhhhhhhhhhhhhhccccccccccCCCCCccccccchhhHHHHHHHHHh-cC-c
Q psy14299        237 HFVDNAVDCSRGSMTFSTLLCFDLQGLLHQANATAATYLFQQDKFYDVSFDTGDKSVQCGRKVDAFKLWLMWKAR-GN-L  314 (448)
Q Consensus       237 ~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~-~  314 (448)
                                                                                         +..+++.. -. .
T Consensus       287 -------------------------------------------------------------------~~~~l~~~~~~~~  299 (407)
T 2zc0_A          287 -------------------------------------------------------------------ALEYLKRGYFEKY  299 (407)
T ss_dssp             -------------------------------------------------------------------HHHHHHTTHHHHH
T ss_pred             -------------------------------------------------------------------HHHHHHcCCchHH
Confidence                                                                               01111110 01 2


Q ss_pred             cHHHHHHHHHHHHHHHHHHhhc-CCCeEEeccCCceeeEEEEeeccCCCccccchhhhhhhhhhhHHHHHHHHhC-CcEE
Q psy14299        315 GFRHFVDNAVDCSRYFLSQISQ-RPGFRLVIPEFQCTNICFWFIPVSLRDKVEDETWWSTLSKVAPRIKEKLVLG-GTLM  392 (448)
Q Consensus       315 G~~~~~~~~~~l~~~~~~~L~~-~pg~~l~~~~~~~~~v~f~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~L~~~-g~~~  392 (448)
                      +++++.++..++++++.+.|++ .|+++++ .+.....+.+.+ |.+.+               ..++.+.|.++ | +.
T Consensus       300 ~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~-~~~~~~~~~~~~-~~~~~---------------~~~l~~~l~~~~g-i~  361 (407)
T 2zc0_A          300 HLEGALLGYKEKRDIMLKALENHLPNAEFT-KPIAGMFVMFFL-PEGAD---------------GISFANELMEREG-VV  361 (407)
T ss_dssp             TTTTHHHHHHHHHHHHHHHHHHHCTTSCBC-CCSBSSEEEEEC-STTCC---------------HHHHHHHHHHHTC-EE
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhCCCCEEe-cCCCcEEEEEEc-CCCCC---------------HHHHHHHHHHhCC-eE
Confidence            3455677788889999999987 5788765 333333333433 22221               23688889888 8 55


Q ss_pred             EEeeecCCc--ccccEEEEEecCCCCCCHHHHHHHHHHHHHHHHHh
Q psy14299        393 IGYQPLQHR--NLHNFFRLVTTCHPASSRQDMDYAIDQIELRGAEV  436 (448)
Q Consensus       393 ~~~~~~~g~--~~~~~lRis~~~~~~~t~edid~l~~al~~~~~~~  436 (448)
                      +.++...+.  ..++++|+++.  .. +++|+++++++|+++.+++
T Consensus       362 v~~g~~~~~~~~~~~~iRis~~--~~-~~~~i~~~~~~l~~~l~~~  404 (407)
T 2zc0_A          362 VVPGKPFYTDESGKNAIRLNFS--RP-SKEEIPIGIKKLAKLYKEK  404 (407)
T ss_dssp             CBCSGGGCSSSCCTTEEEEECS--SS-CTTHHHHHHHHHHHHHHHH
T ss_pred             EECchhccCCCCCCCeEEEEeC--CC-CHHHHHHHHHHHHHHHHHH
Confidence            554322211  12379999994  34 8999999999999988764

>1c7n_A Cystalysin; transferase, aminotransferase, pyridoxal phosphate; HET: PLP; 1.90A {Treponema denticola} SCOP: c.67.1.3 PDB: 1c7o_A*

Probab=99.87  E-value=1.1e-20  Score=190.85  Aligned_cols=291  Identities=11%  Similarity=0.019  Sum_probs=192.8

Q ss_pred             cEEEeCcHHHHHHHHHHHHHHhcCCcccccCCCCCCCeEEEecCCCchHHHHHHHHhCCCCCcEEEEecC-CCC--CcCH
Q psy14299          4 KPFLLPGGSISNMYSICLARYRLDPDTKRKGLSHLPPLCMFTSEDSHYSMLKAAHWLGIGMDNVIRVKTN-ERG--QMIC   80 (448)
Q Consensus         4 ~g~~t~ggT~an~~al~~a~~~~~~~~~~~G~~~~~~~~Vl~~~~~H~s~~~~~~~~g~~~~~v~~v~~~-~~g--~id~   80 (448)
                      ..++|+|||+++..++.+...              +++.|+++..+|.++...++..|.   +++.+|.+ +++  .+|+
T Consensus        91 ~v~~t~g~~~a~~~~~~~l~~--------------~gd~vl~~~p~~~~~~~~~~~~g~---~~~~~~~~~~~g~~~~d~  153 (399)
T 1c7n_A           91 WIINTAGVVPAVFNAVREFTK--------------PGDGVIIITPVYYPFFMAIKNQER---KIIECELLEKDGYYTIDF  153 (399)
T ss_dssp             GEEEESSHHHHHHHHHHHHCC--------------TTCEEEECSSCCTHHHHHHHTTTC---EEEECCCEEETTEEECCH
T ss_pred             hEEEcCCHHHHHHHHHHHhcC--------------CCCEEEEcCCCcHhHHHHHHHcCC---EEEecccccCCCCEEEcH
Confidence            478999999999888876533              567789999999999999988887   78888875 333  5999


Q ss_pred             HHHHHHHHHhhhcCCCcEEEEEeccCCccccccC---HHHHHHHHHHcCCEEEEecccccccccccchhhhhcCC----C
Q psy14299         81 SFLEQTIQTSLAEKKIPLFVNATAGTTVLGAFDP---LDEIATVCEKYDLWMHVDACWGGSLIFSEKYSFVLKGI----N  153 (448)
Q Consensus        81 e~Le~~l~~~~~~~~~~~lVv~~~~~t~tG~~~~---l~~I~~ia~~~g~~l~VD~A~~~~~~~~~~~~~~~~~~----~  153 (448)
                      ++|++++++     .++++|++++++|++|.+.|   +++|.++|++||+++++|++|+.......... .+..+    .
T Consensus       154 ~~l~~~l~~-----~~~~~v~~~~~~nptG~~~~~~~l~~i~~~~~~~~~~li~De~~~~~~~~g~~~~-~~~~~~~~~~  227 (399)
T 1c7n_A          154 QKLEKLSKD-----KNNKALLFCSPHNPVGRVWKKDELQKIKDIVLKSDLMLWSDEIHFDLIMPGYEHT-VFQSIDEQLA  227 (399)
T ss_dssp             HHHHHHHTC-----TTEEEEEEESSBTTTTBCCCHHHHHHHHHHHHHSSCEEEEECTTTTCBCTTCCCC-CGGGSCHHHH
T ss_pred             HHHHHHhcc-----CCCcEEEEcCCCCCCCcCcCHHHHHHHHHHHHHcCCEEEEEccccccccCCCCcc-cHHHcCcccc
Confidence            999999963     25788999999999999988   99999999999999999999987543211000 01111    1


Q ss_pred             CccEEEECCccccCCCC-ceEEEEEeccchhhhhccCCcccccccCcccccccCCCCCcccCCCCchhHHHHHHHHHhCh
Q psy14299        154 RANSVSWNPHKMLGAPL-QCSILLIKEKGLLHQANATAATYLFQQDKFYDVSFDTGDKSVQCGRKVDAFKLWLMWKARGN  232 (448)
Q Consensus       154 ~aD~~~~s~hK~l~~P~-g~G~l~vr~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~  232 (448)
                      ..++++.+++|+++.|. .+|+++++++++..........+-.            .      +                 
T Consensus       228 ~~~i~~~s~sK~~~~~G~r~G~~~~~~~~~~~~l~~~~~~~~~------------~------~-----------------  272 (399)
T 1c7n_A          228 DKTITFTAPSKTFNIAGMGMSNIIIKNPDIRERFTKSRDATSG------------M------P-----------------  272 (399)
T ss_dssp             TTEEEEECSHHHHTCGGGCCEEEECCCHHHHHHHHHHHHHTTC------------C------C-----------------
T ss_pred             CcEEEEEeChhhccccchheEEEEECCHHHHHHHHHHHhhccc------------C------C-----------------
Confidence            24578889999997553 3788887654443332110000000            0      0                 


Q ss_pred             HHHHHHHHHhhhhccCCCccchhhhhhhhhhhhhhhhhhhhhhhccccccccccCCCCCccccccchhhHHHHHHHHHhc
Q psy14299        233 LGFRHFVDNAVDCSRGSMTFSTLLCFDLQGLLHQANATAATYLFQQDKFYDVSFDTGDKSVQCGRKVDAFKLWLMWKARG  312 (448)
Q Consensus       233 ~g~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  312 (448)
                                                                                     .+.+.+..+..+++. +
T Consensus       273 ---------------------------------------------------------------~~~~~~~a~~~~l~~-~  288 (399)
T 1c7n_A          273 ---------------------------------------------------------------FTTLGYKACEICYKE-C  288 (399)
T ss_dssp             ---------------------------------------------------------------CCHHHHHHHHHHHHH-C
T ss_pred             ---------------------------------------------------------------CCHHHHHHHHHHHhC-C
Confidence                                                                           000111111122222 1


Q ss_pred             CccHHHHHHHHHHHHHHHHHHhhc-CCCeEEeccCCceeeEE-EEeeccCCCccccchhhhhhhhhhhHHHHHHHH-hCC
Q psy14299        313 NLGFRHFVDNAVDCSRYFLSQISQ-RPGFRLVIPEFQCTNIC-FWFIPVSLRDKVEDETWWSTLSKVAPRIKEKLV-LGG  389 (448)
Q Consensus       313 ~~G~~~~~~~~~~l~~~~~~~L~~-~pg~~l~~~~~~~~~v~-f~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~L~-~~g  389 (448)
                      .++++++.++..++++++.+.|++ +|+++++  ++..+.+. +.+...+.+               ..++.+.|. ++|
T Consensus       289 ~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~--~~~~~~~~~~~~~~~~~~---------------~~~~~~~l~~~~g  351 (399)
T 1c7n_A          289 GKWLDGCIKVIDKNQRIVKDFFEVNHPEIKAP--LIEGTYLQWIDFRALKMD---------------HKAMEEFMIHKAQ  351 (399)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHCTTSBCC--CCSBSSEEEEECGGGCCC---------------HHHHHHHHHHTTC
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHhhCCCCeEe--cCCceEEEEEEcccCCCC---------------HHHHHHHHHHhCC
Confidence            345667788888999999999998 8998875  44555554 333111111               236888887 678


Q ss_pred             cEEEEeeecCCcccccEEEEEecCCCCCCHHHHHHHHHHHHHHHHHhHH
Q psy14299        390 TLMIGYQPLQHRNLHNFFRLVTTCHPASSRQDMDYAIDQIELRGAEVDL  438 (448)
Q Consensus       390 ~~~~~~~~~~g~~~~~~lRis~~~~~~~t~edid~l~~al~~~~~~~~~  438 (448)
                      + .+.++...+...++++|+++.  .  ++++++++++.|+++.+++..
T Consensus       352 i-~v~~g~~~~~~~~~~iRis~~--~--~~~~l~~~l~~l~~~l~~~~~  395 (399)
T 1c7n_A          352 I-FFDEGYIFGDGGIGFERINLA--A--PSSVIQESLERLNKALKDLKN  395 (399)
T ss_dssp             C-CCEEGGGGCGGGTTEEEEECC--S--CHHHHHHHHHHHHHHHHHHC-
T ss_pred             E-EEeCccccCCCCCCeEEEEec--c--CHHHHHHHHHHHHHHHHHHHh
Confidence            4 444433222112479999995  2  378999999999998876543

>3fdb_A Beta C-S lyase, putative PLP-dependent beta-cystathionase; PLP-dependent transferase-like fold, structural genomics; HET: LLP; 1.99A {Corynebacterium diphtheriae}

Probab=99.87  E-value=1.3e-20  Score=188.45  Aligned_cols=284  Identities=13%  Similarity=0.082  Sum_probs=189.1

Q ss_pred             cEEEeCcHHHHHHHHHHHHHHhcCCcccccCCCCCCCeEEEecCCCchHHHHHHHHhCCCCCcEEEEecCCCCCcCHHHH
Q psy14299          4 KPFLLPGGSISNMYSICLARYRLDPDTKRKGLSHLPPLCMFTSEDSHYSMLKAAHWLGIGMDNVIRVKTNERGQMICSFL   83 (448)
Q Consensus         4 ~g~~t~ggT~an~~al~~a~~~~~~~~~~~G~~~~~~~~Vl~~~~~H~s~~~~~~~~g~~~~~v~~v~~~~~g~id~e~L   83 (448)
                      ..++|+|||+++..++.+...              +++.|+++...|.++...++..|.   +++.+|.+++  +|+++|
T Consensus        83 ~i~~t~g~~~a~~~~~~~~~~--------------~gd~vl~~~~~~~~~~~~~~~~g~---~~~~~~~~~~--~d~~~l  143 (377)
T 3fdb_A           83 WIFPIPDVVRGLYIAIDHFTP--------------AQSKVIVPTPAYPPFFHLLSATQR---EGIFIDATGG--INLHDV  143 (377)
T ss_dssp             GEEEESCHHHHHHHHHHHHSC--------------TTCCEEEEESCCTHHHHHHHHHTC---CEEEEECTTS--CCHHHH
T ss_pred             HEEEeCChHHHHHHHHHHhcC--------------CCCEEEEcCCCcHhHHHHHHHcCC---EEEEccCCCC--CCHHHH
Confidence            578999999999888876543              456688899999999999999998   7899998876  999999


Q ss_pred             HHHHHHhhhcCCCcEEEEEeccCCccccccC---HHHHHHHHHHcCCEEEEecccccccccccchhhhhcCC--CCccEE
Q psy14299         84 EQTIQTSLAEKKIPLFVNATAGTTVLGAFDP---LDEIATVCEKYDLWMHVDACWGGSLIFSEKYSFVLKGI--NRANSV  158 (448)
Q Consensus        84 e~~l~~~~~~~~~~~lVv~~~~~t~tG~~~~---l~~I~~ia~~~g~~l~VD~A~~~~~~~~~~~~~~~~~~--~~aD~~  158 (448)
                      ++++++      +++++++++++|++|.+.|   +++|.++|++||+++++|++|+......+.....+..+  ...+.+
T Consensus       144 ~~~l~~------~~~~v~i~~p~nptG~~~~~~~l~~l~~~~~~~~~~li~De~~~~~~~~g~~~~~~~~~~~~~~~~i~  217 (377)
T 3fdb_A          144 EKGFQA------GARSILLCNPYNPLGMVFAPEWLNELCDLAHRYDARVLVDEIHAPLVFDGQHTVAAGVSDTAASVCIT  217 (377)
T ss_dssp             HHHHHT------TCCEEEEESSBTTTTBCCCHHHHHHHHHHHHHTTCEEEEECTTGGGBSSSCCCCGGGSCHHHHHHEEE
T ss_pred             HHHhcc------CCCEEEEeCCCCCCCCCCCHHHHHHHHHHHHHcCCEEEEEcccchhhcCCCCCcccHHHccCCCcEEE
Confidence            999976      3679999999999999875   67777789999999999999987443220000001111  123478


Q ss_pred             EECCccccCCC-CceEEEEEeccchhhhhccCCcccccccCcccccccCCCCCcccCCCCchhHHHHHHHHHhChHHHHH
Q psy14299        159 SWNPHKMLGAP-LQCSILLIKEKGLLHQANATAATYLFQQDKFYDVSFDTGDKSVQCGRKVDAFKLWLMWKARGNLGFRH  237 (448)
Q Consensus       159 ~~s~hK~l~~P-~g~G~l~vr~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~g~~~  237 (448)
                      +.+++|+++.| ..+|++++.++.+....... ..+...                                         
T Consensus       218 ~~s~sK~~g~~G~r~G~~~~~~~~~~~~~~~~-~~~~~~-----------------------------------------  255 (377)
T 3fdb_A          218 ITAPSKAWNIAGLKCAQIIFSNPSDAEHWQQL-SPVIKD-----------------------------------------  255 (377)
T ss_dssp             EECSTTTTTCGGGCCEEEECCSHHHHHHHHHS-CHHHHC-----------------------------------------
T ss_pred             EEeChHhccCcchhheEEEeCCHHHHHHHHHH-HHhhcC-----------------------------------------
Confidence            88999999644 34676666555443332110 000000                                         


Q ss_pred             HHHHhhhhccCCCccchhhhhhhhhhhhhhhhhhhhhhhccccccccccCCCCCccccccchhhHHHHHHHHHhcCccHH
Q psy14299        238 FVDNAVDCSRGSMTFSTLLCFDLQGLLHQANATAATYLFQQDKFYDVSFDTGDKSVQCGRKVDAFKLWLMWKARGNLGFR  317 (448)
Q Consensus       238 ~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~  317 (448)
                                                                               +.+.+.+..+..+++. ..+.++
T Consensus       256 ---------------------------------------------------------~~~~~~~~a~~~~l~~-~~~~~~  277 (377)
T 3fdb_A          256 ---------------------------------------------------------GASTLGLIAAEAAYRY-GTDFLN  277 (377)
T ss_dssp             ---------------------------------------------------------CCCHHHHHHHHHHHHH-CHHHHH
T ss_pred             ---------------------------------------------------------CCCHHHHHHHHHHHhc-cHHHHH
Confidence                                                                     0000111111122221 124467


Q ss_pred             HHHHHHHHHHHHHHHHhhc-CCCeEEeccCCceeeEE-EEeeccCCCccccchhhhhhhhhhhHHHHHHHHhC-CcEEEE
Q psy14299        318 HFVDNAVDCSRYFLSQISQ-RPGFRLVIPEFQCTNIC-FWFIPVSLRDKVEDETWWSTLSKVAPRIKEKLVLG-GTLMIG  394 (448)
Q Consensus       318 ~~~~~~~~l~~~~~~~L~~-~pg~~l~~~~~~~~~v~-f~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~L~~~-g~~~~~  394 (448)
                      ++.++..++++++.+.|++ +|+++++  ++..+.+. +.+...+..                .++.+.|.++ | +.+.
T Consensus       278 ~~~~~~~~~~~~l~~~L~~~~~~~~~~--~~~~~~~~~~~~~~~~~~----------------~~~~~~l~~~~g-i~v~  338 (377)
T 3fdb_A          278 QEVAYLKNNHDFLLHEIPKRIPGAKIT--PMQATYLMWIDFRDTTIE----------------GSPSEFFIEKAK-VAMN  338 (377)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHSTTCEEC--CCSBCSEEEEECTTSCCC----------------SCHHHHHHHHHC-EECE
T ss_pred             HHHHHHHHHHHHHHHHHHhhCCCceEe--cCCeeEEEEEECcccCCC----------------HHHHHHHHHhCC-EEec
Confidence            7788899999999999998 8999986  34445444 333211111                1466677766 7 5555


Q ss_pred             eeecCCcccccEEEEEecCCCCCCHHHHHHHHHHHHHHHHH
Q psy14299        395 YQPLQHRNLHNFFRLVTTCHPASSRQDMDYAIDQIELRGAE  435 (448)
Q Consensus       395 ~~~~~g~~~~~~lRis~~~~~~~t~edid~l~~al~~~~~~  435 (448)
                      ++...+...++++|++++    +++++++++++.|+++.++
T Consensus       339 ~g~~~~~~~~~~~Ris~~----~~~e~i~~~l~~l~~~l~~  375 (377)
T 3fdb_A          339 DGAWFGEDGTGFCRLNFA----TSREVLEEAIDRMAKAVSH  375 (377)
T ss_dssp             EGGGGCGGGTTEEEEECC----SCHHHHHHHHHHHHHHHTT
T ss_pred             CChhccCCCCCEEEEEeC----CCHHHHHHHHHHHHHHHhh
Confidence            543333223489999994    3899999999999988754

>1v2d_A Glutamine aminotransferase; PLP, riken structural genomics/proteomics initi RSGI, structural genomics; HET: PLP; 1.90A {Thermus thermophilus} SCOP: c.67.1.1 PDB: 1v2e_A* 1v2f_A*

Probab=99.87  E-value=5.4e-21  Score=192.09  Aligned_cols=282  Identities=11%  Similarity=0.002  Sum_probs=188.6

Q ss_pred             cEEEeCcHHHHHHHHHHHHHHhcCCcccccCCCCCCCeEEEecCCCchHHHHHHHHhCCCCCcEEEEecC---CCCCcCH
Q psy14299          4 KPFLLPGGSISNMYSICLARYRLDPDTKRKGLSHLPPLCMFTSEDSHYSMLKAAHWLGIGMDNVIRVKTN---ERGQMIC   80 (448)
Q Consensus         4 ~g~~t~ggT~an~~al~~a~~~~~~~~~~~G~~~~~~~~Vl~~~~~H~s~~~~~~~~g~~~~~v~~v~~~---~~g~id~   80 (448)
                      .+++|+|||+++..++.++..              +++.|+++..+|.++...++..|.   +++.+|.+   +++.+|+
T Consensus        80 ~v~~~~g~~~a~~~~~~~~~~--------------~gd~Vl~~~~~~~~~~~~~~~~g~---~~~~v~~~~~~~~~~~d~  142 (381)
T 1v2d_A           80 SVVVTSGATEALYVLLQSLVG--------------PGDEVVVLEPFFDVYLPDAFLAGA---KARLVRLDLTPEGFRLDL  142 (381)
T ss_dssp             GEEEESSHHHHHHHHHHHHCC--------------TTCEEEEEESCCTTHHHHHHHTTC---EEEEEECEEETTEEECCH
T ss_pred             hEEEcCChHHHHHHHHHHhCC--------------CCCEEEEcCCCchhHHHHHHHcCC---EEEEEeCCCCCccCCcCH
Confidence            489999999999998877633              566788899999999999999888   78899986   5678999


Q ss_pred             HHHHHHHHHhhhcCCCcEEEEEeccCCccccccC---HHHHHHHHHHcCCEEEEecccccccccccchhhhhcCCCCccE
Q psy14299         81 SFLEQTIQTSLAEKKIPLFVNATAGTTVLGAFDP---LDEIATVCEKYDLWMHVDACWGGSLIFSEKYSFVLKGINRANS  157 (448)
Q Consensus        81 e~Le~~l~~~~~~~~~~~lVv~~~~~t~tG~~~~---l~~I~~ia~~~g~~l~VD~A~~~~~~~~~~~~~~~~~~~~aD~  157 (448)
                      ++|++++++      ++++|++++++|++|.+.|   +++|.++|++||+++|+|++|+.+.. .........-....|+
T Consensus       143 ~~l~~~l~~------~~~~v~~~~~~nptG~~~~~~~l~~i~~~~~~~~~~li~De~~~~~~~-g~~~~~~~~~~~~~~~  215 (381)
T 1v2d_A          143 SALEKALTP------RTRALLLNTPMNPTGLVFGERELEAIARLARAHDLFLISDEVYDELYY-GERPRRLREFAPERTF  215 (381)
T ss_dssp             HHHHTTCCT------TEEEEEEESSCTTTCCCCCHHHHHHHHHHHHHTTCEEEEECTTTTCBS-SSCCCCHHHHCTTTEE
T ss_pred             HHHHHhcCc------CCEEEEECCCCCCCCCccCHHHHHHHHHHHHHcCCEEEEEcCcccccc-CCCCCCHHHhcCCCEE
Confidence            999998853      4789999999999999876   89999999999999999999987643 1100000000124789


Q ss_pred             EEECCccccCCCCc--eEEEEEeccchhhhhccCCcccccccCcccccccCCCCCcccCCCCchhHHHHHHHHHhChHHH
Q psy14299        158 VSWNPHKMLGAPLQ--CSILLIKEKGLLHQANATAATYLFQQDKFYDVSFDTGDKSVQCGRKVDAFKLWLMWKARGNLGF  235 (448)
Q Consensus       158 ~~~s~hK~l~~P~g--~G~l~vr~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~g~  235 (448)
                      ++.++||+++.| |  +|++++++ ++....... ..+.              .+                         
T Consensus       216 ~~~s~sK~~~~~-G~r~G~~~~~~-~~~~~~~~~-~~~~--------------~~-------------------------  253 (381)
T 1v2d_A          216 TVGSAGKRLEAT-GYRVGWIVGPK-EFMPRLAGM-RQWT--------------SF-------------------------  253 (381)
T ss_dssp             EEEEHHHHTTCG-GGCCEEEECCT-TTHHHHHHH-HHHH--------------TS-------------------------
T ss_pred             EEeechhhcCCc-ccceEEEEeCH-HHHHHHHHH-Hhhc--------------cc-------------------------
Confidence            999999998644 5  78887754 333222100 0000              00                         


Q ss_pred             HHHHHHhhhhccCCCccchhhhhhhhhhhhhhhhhhhhhhhccccccccccCCCCCccccccchhhHHHHHHHHHhc-Cc
Q psy14299        236 RHFVDNAVDCSRGSMTFSTLLCFDLQGLLHQANATAATYLFQQDKFYDVSFDTGDKSVQCGRKVDAFKLWLMWKARG-NL  314 (448)
Q Consensus       236 ~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~  314 (448)
                                                                                 +.+.+.+..+..+++... .+
T Consensus       254 -----------------------------------------------------------~~~~~~~~a~~~~l~~~~~~~  274 (381)
T 1v2d_A          254 -----------------------------------------------------------SAPTPLQAGVAEALKLARREG  274 (381)
T ss_dssp             -----------------------------------------------------------SCCHHHHHHHHHHHHHHHHTT
T ss_pred             -----------------------------------------------------------CCCcHHHHHHHHHHhCcccHH
Confidence                                                                       000111112222333221 45


Q ss_pred             cHHHHHHHHHHHHHHHHHHhhcCCCeEEeccCCceeeEE-EEeeccCCCccccchhhhhhhhhhhHHHHHHHHhCCcEEE
Q psy14299        315 GFRHFVDNAVDCSRYFLSQISQRPGFRLVIPEFQCTNIC-FWFIPVSLRDKVEDETWWSTLSKVAPRIKEKLVLGGTLMI  393 (448)
Q Consensus       315 G~~~~~~~~~~l~~~~~~~L~~~pg~~l~~~~~~~~~v~-f~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~L~~~g~~~~  393 (448)
                      +++++.++..++++++.+.|++. |++++ . +..+.+. +.+ +.    .               ++.+.|.++| +.+
T Consensus       275 ~~~~~~~~~~~~~~~l~~~L~~~-g~~~~-~-~~~~~~~~~~~-~~----~---------------~~~~~l~~~g-i~v  330 (381)
T 1v2d_A          275 FYEALREGYRRRRDLLAGGLRAM-GLRVY-V-PEGTYFLMAEL-PG----W---------------DAFRLVEEAR-VAL  330 (381)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHT-TCCEE-C-CSBSSEEEEEC-TT----C---------------CHHHHHHHTC-EEC
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHC-CCEec-C-CCcceEEEEec-Ch----H---------------hHHHHHHhCC-EEE
Confidence            67888899999999999999995 89886 4 3333333 322 10    0               1445667788 445


Q ss_pred             EeeecCCc--ccccEEEEEecCCCCCCHHHHHHHHHHHHHHHHHhHH
Q psy14299        394 GYQPLQHR--NLHNFFRLVTTCHPASSRQDMDYAIDQIELRGAEVDL  438 (448)
Q Consensus       394 ~~~~~~g~--~~~~~lRis~~~~~~~t~edid~l~~al~~~~~~~~~  438 (448)
                      .++...+.  ..++++|+++.  .  +++|++++++.|+++.++...
T Consensus       331 ~~g~~~~~~~~~~~~iRi~~~--~--~~~~i~~~~~~l~~~l~~~r~  373 (381)
T 1v2d_A          331 IPASAFYLEDPPKDLFRFAFC--K--TEEELHLALERLGRVVNSPRE  373 (381)
T ss_dssp             EEGGGGCSSSCCTTEEEEECC--S--CHHHHHHHHHHHHHHC-----
T ss_pred             ecchHhCCCCCCCCEEEEEeC--C--CHHHHHHHHHHHHHHHhhccc
Confidence            44322211  12379999994  3  899999999999998776543

>3piu_A 1-aminocyclopropane-1-carboxylate synthase; fruit ripening, ethylene biosynthesis, lyase, pyridoxal 5'-P binding; HET: LLP PLR; 1.35A {Malus domestica} SCOP: c.67.1.4 PDB: 1m4n_A* 1m7y_A* 1ynu_A* 1b8g_A*

Probab=99.87  E-value=2e-20  Score=191.71  Aligned_cols=302  Identities=15%  Similarity=0.137  Sum_probs=193.6

Q ss_pred             cEEEeCcHHHHHHHHHHHHHHhcCCcccccCCCCCCCeEEEecCCCchHHHHHHH-HhCCCCCcEEEEecCCC--CCcCH
Q psy14299          4 KPFLLPGGSISNMYSICLARYRLDPDTKRKGLSHLPPLCMFTSEDSHYSMLKAAH-WLGIGMDNVIRVKTNER--GQMIC   80 (448)
Q Consensus         4 ~g~~t~ggT~an~~al~~a~~~~~~~~~~~G~~~~~~~~Vl~~~~~H~s~~~~~~-~~g~~~~~v~~v~~~~~--g~id~   80 (448)
                      .+++|+|||++|..++.+++.              +++.|+++...|.++...+. ..|.   +++.++.+++  ..+|+
T Consensus       113 ~v~~~~gg~~a~~~~~~~l~~--------------~gd~vl~~~p~~~~~~~~~~~~~g~---~~~~~~~~~~~~~~~d~  175 (435)
T 3piu_A          113 HLVLTAGATSANETFIFCLAD--------------PGEAVLIPTPYYPGFDRDLKWRTGV---EIVPIHCTSSNGFQITE  175 (435)
T ss_dssp             GEEEEEHHHHHHHHHHHHHCC--------------TTCEEEEEESCCTTHHHHTTTTTCC---EEEEEECCGGGTSCCCH
T ss_pred             HEEEcCChHHHHHHHHHHhcC--------------CCCeEEECCCccccHHHHHHHhcCC---EEEEeeCCCccCCcCCH
Confidence            579999999999998877644              56778999999999998877 6677   7889998763  46899


Q ss_pred             HHHHHHHHHhhhcCCCcEEEEEeccCCccccccC---HHHHHHHHHHcCCEEEEecccccccccccch---hhhhcC--C
Q psy14299         81 SFLEQTIQTSLAEKKIPLFVNATAGTTVLGAFDP---LDEIATVCEKYDLWMHVDACWGGSLIFSEKY---SFVLKG--I  152 (448)
Q Consensus        81 e~Le~~l~~~~~~~~~~~lVv~~~~~t~tG~~~~---l~~I~~ia~~~g~~l~VD~A~~~~~~~~~~~---~~~~~~--~  152 (448)
                      ++|++++++....+.++++|++++++|++|.+.|   +++|.++|++||+++++|++|+.+.+.....   ......  +
T Consensus       176 ~~l~~~l~~~~~~~~~~~~v~i~~p~nptG~~~~~~~l~~l~~~~~~~~~~li~Dea~~~~~~~~~~~~~~~~~~~~~~~  255 (435)
T 3piu_A          176 TALEEAYQEAEKRNLRVKGVLVTNPSNPLGTTMTRNELYLLLSFVEDKGIHLISDEIYSGTAFSSPSFISVMEVLKDRNC  255 (435)
T ss_dssp             HHHHHHHHHHHHTTCCEEEEEEESSCTTTCCCCCHHHHHHHHHHHHHHTCEEEEECTTGGGCCSSSCCCCHHHHHHC---
T ss_pred             HHHHHHHHHHHhcCCCeEEEEEcCCCCCCCCCCCHHHHHHHHHHHHHcCCEEEEeccccccccCCCCCcCHHHhcccccc
Confidence            9999999875555567899999999999998865   5888899999999999999998754321110   000010  0


Q ss_pred             ------CCccEEEECCccccCCC-CceEEEEEeccchhhhhccCCcccccccCcccccccCCCCCcccCCCCchhHHHHH
Q psy14299        153 ------NRANSVSWNPHKMLGAP-LQCSILLIKEKGLLHQANATAATYLFQQDKFYDVSFDTGDKSVQCGRKVDAFKLWL  225 (448)
Q Consensus       153 ------~~aD~~~~s~hK~l~~P-~g~G~l~vr~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  225 (448)
                            ....+++.++||+++.| ..+|+++.+++.+...... ...+...                      ..+...+
T Consensus       256 d~~~~~~~~~i~i~s~sK~~g~~G~r~G~~~~~~~~~~~~~~~-~~~~~~~----------------------~~~~~~~  312 (435)
T 3piu_A          256 DENSEVWQRVHVVYSLSKDLGLPGFRVGAIYSNDDMVVAAATK-MSSFGLV----------------------SSQTQHL  312 (435)
T ss_dssp             ----CGGGGEEEEEESSSSSCCGGGCEEEEEESCHHHHHHHHH-HGGGSCC----------------------CHHHHHH
T ss_pred             ccccCCCCCEEEEEeeecccCCCceeEEEEEeCCHHHHHHHHH-HhhcCCC----------------------CHHHHHH
Confidence                  11237788999999744 3578887755443332211 1111000                      0000000


Q ss_pred             HHHHhChHHHHHHHHHhhhhccCCCccchhhhhhhhhhhhhhhhhhhhhhhccccccccccCCCCCccccccchhhHHHH
Q psy14299        226 MWKARGNLGFRHFVDNAVDCSRGSMTFSTLLCFDLQGLLHQANATAATYLFQQDKFYDVSFDTGDKSVQCGRKVDAFKLW  305 (448)
Q Consensus       226 ~~~~~g~~g~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  305 (448)
                      +...+....+                                                                      
T Consensus       313 ~~~~l~~~~~----------------------------------------------------------------------  322 (435)
T 3piu_A          313 LSAMLSDKKL----------------------------------------------------------------------  322 (435)
T ss_dssp             HHHHHHCHHH----------------------------------------------------------------------
T ss_pred             HHHHhcChHH----------------------------------------------------------------------
Confidence            0000000000                                                                      


Q ss_pred             HHHHHhcCccHHHHHHHHHHHHHHHHHHhhcCCCeEEeccCCceeeEEEEeeccCCCccccchhhhhhhhhhhHHHHHHH
Q psy14299        306 LMWKARGNLGFRHFVDNAVDCSRYFLSQISQRPGFRLVIPEFQCTNICFWFIPVSLRDKVEDETWWSTLSKVAPRIKEKL  385 (448)
Q Consensus       306 ~~~~~~~~~G~~~~~~~~~~l~~~~~~~L~~~pg~~l~~~~~~~~~v~f~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~L  385 (448)
                            -.+.++++.++..++++++.+.|+++ |++++  ++..+.+.+...+......    .     .....++.+.|
T Consensus       323 ------~~~~~~~~~~~~~~~~~~l~~~L~~~-g~~~~--~~~~g~~~~~~l~~~~~~~----~-----~~~~~~~~~~l  384 (435)
T 3piu_A          323 ------TKNYIAENHKRLKQRQKKLVSGLQKS-GISCL--NGNAGLFCWVDMRHLLRSN----T-----FEAEMELWKKI  384 (435)
T ss_dssp             ------HHHHHHHHHHHHHHHHHHHHHHHHTT-TCEEC--CCCSSSEEEEECGGGSSSS----S-----HHHHHHHHHHH
T ss_pred             ------HHHHHHHHHHHHHHHHHHHHHHHHhc-CCccc--CCCeeEEEEEEcccccccC----C-----chhHHHHHHHH
Confidence                  01234556777888899999999998 89875  3444334332222211100    0     00123678888


Q ss_pred             HhC-CcEEEEeeecCCcccccEEEEEecCCCCCCHHHHHHHHHHHHHHHHHhH
Q psy14299        386 VLG-GTLMIGYQPLQHRNLHNFFRLVTTCHPASSRQDMDYAIDQIELRGAEVD  437 (448)
Q Consensus       386 ~~~-g~~~~~~~~~~g~~~~~~lRis~~~~~~~t~edid~l~~al~~~~~~~~  437 (448)
                      .++ | +.+.++...+...++++|+++.  .. +++|++++++.|+++.+++.
T Consensus       385 ~~~~g-i~v~~g~~~~~~~~~~iRi~~~--~~-~~e~i~~~l~~l~~~l~~~~  433 (435)
T 3piu_A          385 VYEVH-LNISPGSSCHCTEPGWFRVCFA--NL-PERTLDLAMQRLKAFVGEYY  433 (435)
T ss_dssp             HHTSC-EECEEGGGGTCSSTTEEEEECS--SS-CHHHHHHHHHHHHHHHHHHC
T ss_pred             HHHCC-EEEeCCcccCCCCCCEEEEEee--CC-CHHHHHHHHHHHHHHHHHHh
Confidence            877 7 5555543322222479999994  34 99999999999999887653

>1bw0_A TAT, protein (tyrosine aminotransferase); tyrosine catabolism, pyridoxal-5'-phosphate, PLP; HET: LLP; 2.50A {Trypanosoma cruzi} SCOP: c.67.1.1

Probab=99.87  E-value=1.1e-20  Score=191.98  Aligned_cols=294  Identities=14%  Similarity=0.054  Sum_probs=194.8

Q ss_pred             cEEEeCcHHHHHHHHHHHHHHhcCCcccccCCCCCCCeEEEecCCCchHHHHHHHHhCCCCCcEEEEecCCC--CCcCHH
Q psy14299          4 KPFLLPGGSISNMYSICLARYRLDPDTKRKGLSHLPPLCMFTSEDSHYSMLKAAHWLGIGMDNVIRVKTNER--GQMICS   81 (448)
Q Consensus         4 ~g~~t~ggT~an~~al~~a~~~~~~~~~~~G~~~~~~~~Vl~~~~~H~s~~~~~~~~g~~~~~v~~v~~~~~--g~id~e   81 (448)
                      .+++|+|||+++..++.++..              +++.|+++..+|.++...++..|.   +++.++.+++  +.+|++
T Consensus       106 ~v~~~~g~~~al~~~~~~l~~--------------~gd~vl~~~p~y~~~~~~~~~~g~---~~~~v~~~~~~~~~~d~~  168 (416)
T 1bw0_A          106 NVVLCSGGSHGILMAITAICD--------------AGDYALVPQPGFPHYETVCKAYGI---GMHFYNCRPENDWEADLD  168 (416)
T ss_dssp             GEEEESHHHHHHHHHHHHHCC--------------TTCEEEEEESCCTHHHHHHHHTTC---EEEEEEEEGGGTTEECHH
T ss_pred             eEEEeCChHHHHHHHHHHhCC--------------CCCEEEEcCCCcHhHHHHHHHcCc---EEEEeecCcccCCCCCHH
Confidence            579999999999888877633              566788898999999999999888   7888887643  579999


Q ss_pred             HHHHHHHHhhhcCCCcEEEEEeccCCccccccC---HHHHHHHHHHcCCEEEEeccccccccccc----chhhhhcCCC-
Q psy14299         82 FLEQTIQTSLAEKKIPLFVNATAGTTVLGAFDP---LDEIATVCEKYDLWMHVDACWGGSLIFSE----KYSFVLKGIN-  153 (448)
Q Consensus        82 ~Le~~l~~~~~~~~~~~lVv~~~~~t~tG~~~~---l~~I~~ia~~~g~~l~VD~A~~~~~~~~~----~~~~~~~~~~-  153 (448)
                      +|++++++      ++++|++++++|++|.+.|   +++|.++|++||+++++|++|+.......    ... .+..+. 
T Consensus       169 ~l~~~l~~------~~~~v~i~~p~nptG~~~~~~~l~~i~~~~~~~~~~li~De~~~~~~~~g~~~~~~~~-~~~~~~~  241 (416)
T 1bw0_A          169 EIRRLKDD------KTKLLIVTNPSNPCGSNFSRKHVEDIVRLAEELRLPLFSDEIYAGMVFKGKDPNATFT-SVADFET  241 (416)
T ss_dssp             HHHHHCCT------TEEEEEEESSCTTTCCCCCHHHHHHHHHHHHHHTCCEEEECTTTTCBCCSSCTTCCCC-CTTSSCC
T ss_pred             HHHHHhcc------CCeEEEEeCCCCCCCcccCHHHHHHHHHHHHHcCCEEEEEccccccccCCCCCCCCcc-CHHHccC
Confidence            99999854      4788999999999999998   99999999999999999999987433111    010 111111 


Q ss_pred             -CccEEEECCccccCCCC-ceEEEEEecc-chhhhhccCCcccccccCcccccccCCCCCcccCCCCchhHHHHHHHHHh
Q psy14299        154 -RANSVSWNPHKMLGAPL-QCSILLIKEK-GLLHQANATAATYLFQQDKFYDVSFDTGDKSVQCGRKVDAFKLWLMWKAR  230 (448)
Q Consensus       154 -~aD~~~~s~hK~l~~P~-g~G~l~vr~~-~~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  230 (448)
                       ..++++.+++|+++.|. .+|+++++++ ............+. .                               .. 
T Consensus       242 ~~~~i~~~s~sK~~~~~Glr~G~~~~~~~~~~~~~~~~~~~~~~-~-------------------------------~~-  288 (416)
T 1bw0_A          242 TVPRVILGGTAKNLVVPGWRLGWLLYVDPHGNGPSFLEGLKRVG-M-------------------------------LV-  288 (416)
T ss_dssp             SCCEEEEEESTTTTSCGGGCCEEEEEECTTCSCHHHHHHHHHHH-H-------------------------------HH-
T ss_pred             CCcEEEEecchhhCCCCCceEEEEEeeCchhhHHHHHHHHHHHh-c-------------------------------cc-
Confidence             12466779999987663 4788887664 22221110000000 0                               00 


Q ss_pred             ChHHHHHHHHHhhhhccCCCccchhhhhhhhhhhhhhhhhhhhhhhccccccccccCCCCCccccccchhhHHHHHHHHH
Q psy14299        231 GNLGFRHFVDNAVDCSRGSMTFSTLLCFDLQGLLHQANATAATYLFQQDKFYDVSFDTGDKSVQCGRKVDAFKLWLMWKA  310 (448)
Q Consensus       231 g~~g~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  310 (448)
                                                                                     .+.+.+.+.++..+++.
T Consensus       289 ---------------------------------------------------------------~~~~~~~~~a~~~~l~~  305 (416)
T 1bw0_A          289 ---------------------------------------------------------------CGPCTVVQAALGEALLN  305 (416)
T ss_dssp             ---------------------------------------------------------------TCSCHHHHHHHHHHHHS
T ss_pred             ---------------------------------------------------------------cCCCcHHHHHHHHHHhc
Confidence                                                                           00111223333344554


Q ss_pred             hcCccHHHHHHHHHHHHHHHHHHhhcCCCeEEeccCCceeeEEEEeeccCCCccccchhhhhhhhhhhHHHHHHHH-hCC
Q psy14299        311 RGNLGFRHFVDNAVDCSRYFLSQISQRPGFRLVIPEFQCTNICFWFIPVSLRDKVEDETWWSTLSKVAPRIKEKLV-LGG  389 (448)
Q Consensus       311 ~~~~G~~~~~~~~~~l~~~~~~~L~~~pg~~l~~~~~~~~~v~f~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~L~-~~g  389 (448)
                      ...++++++.++..++++++.+.|+++||++++ .+.....+.+.+......+.           ....++.+.|. ++|
T Consensus       306 ~~~~~~~~~~~~~~~~~~~l~~~L~~~~g~~~~-~~~~~~~~~~~~~~~~~~~~-----------~~~~~~~~~l~~~~g  373 (416)
T 1bw0_A          306 TPQEHLDQIVAKIEESAMYLYNHIGECIGLAPT-MPRGAMYLMSRIDLEKYRDI-----------KTDVEFFEKLLEEEN  373 (416)
T ss_dssp             SCHHHHHHHHHHHHHHHHHHHHHHTTSTTEEEC-CCCBTTEEEEEECGGGBSSC-----------CSHHHHHHHHHHHHC
T ss_pred             ccHHHHHHHHHHHHHHHHHHHHHHHhCCCCccc-CCCeeEEEEEeCCHHHcCCC-----------CCHHHHHHHHHHHCC
Confidence            445677888889999999999999999999875 33223333333321111000           01236777775 778


Q ss_pred             cEEEEeeecCCcccccEEEEEecCCCCCCHHHHHHHHHHHHHHHHHh
Q psy14299        390 TLMIGYQPLQHRNLHNFFRLVTTCHPASSRQDMDYAIDQIELRGAEV  436 (448)
Q Consensus       390 ~~~~~~~~~~g~~~~~~lRis~~~~~~~t~edid~l~~al~~~~~~~  436 (448)
                       +.+.++...+.  ++++|+++.    +++++++++++.|+++.++.
T Consensus       374 -i~v~~g~~f~~--~~~iRis~~----~~~e~l~~~l~~l~~~l~~~  413 (416)
T 1bw0_A          374 -VQVLPGTIFHA--PGFTRLTTT----RPVEVYREAVERIKAFCQRH  413 (416)
T ss_dssp             -EECEEGGGGTC--TTEEEEECC----SCHHHHHHHHHHHHHHHHHH
T ss_pred             -EEEecccccCC--CCeEEEEec----CCHHHHHHHHHHHHHHHHHh
Confidence             55554433221  379999993    57999999999999887654

>3dr4_A Putative perosamine synthetase; deoxysugar, pyridoxal phosphate, aspartate aminotransferase, O-antigen; HET: G4M; 1.60A {Caulobacter crescentus} PDB: 3dr7_A* 3bn1_A*

Probab=99.87  E-value=5.3e-21  Score=192.97  Aligned_cols=150  Identities=12%  Similarity=0.125  Sum_probs=116.0

Q ss_pred             cEEEeCcHHHHHHHHHHHHHHhcCCcccccCCCCCCCeEEEecCCCchHHHHHHHHhCCCCCcEEEEecC-CCCCcCHHH
Q psy14299          4 KPFLLPGGSISNMYSICLARYRLDPDTKRKGLSHLPPLCMFTSEDSHYSMLKAAHWLGIGMDNVIRVKTN-ERGQMICSF   82 (448)
Q Consensus         4 ~g~~t~ggT~an~~al~~a~~~~~~~~~~~G~~~~~~~~Vl~~~~~H~s~~~~~~~~g~~~~~v~~v~~~-~~g~id~e~   82 (448)
                      .+++|+|||+++..++.++..             .+++.|+++..+|.++..+++..|.   +++.++.+ +++.+|+++
T Consensus        73 ~~i~~~~gt~al~~~l~~~~~-------------~~gd~vl~~~~~~~~~~~~~~~~g~---~~~~~~~~~~~~~~d~~~  136 (391)
T 3dr4_A           73 HAIACNNGTTALHLALVAMGI-------------GPGDEVIVPSLTYIASANSVTYCGA---TPVLVDNDPRTFNLDAAK  136 (391)
T ss_dssp             EEEEESSHHHHHHHHHHHHTC-------------CTTCEEEEESSSCTHHHHHHHHTTC---EEEEECBCTTTCSBCGGG
T ss_pred             cEEEeCCHHHHHHHHHHHcCC-------------CCcCEEEECCCchHHHHHHHHHCCC---EEEEEecCccccCcCHHH
Confidence            578999999999988877622             1567899999999999999999998   78999988 567999999


Q ss_pred             HHHHHHHhhhcCCCcEEEEEeccCCccccccCHHHHHHHHHHcCCEEEEecccccccccccchhhhhcCCCCccEEEECC
Q psy14299         83 LEQTIQTSLAEKKIPLFVNATAGTTVLGAFDPLDEIATVCEKYDLWMHVDACWGGSLIFSEKYSFVLKGINRANSVSWNP  162 (448)
Q Consensus        83 Le~~l~~~~~~~~~~~lVv~~~~~t~tG~~~~l~~I~~ia~~~g~~l~VD~A~~~~~~~~~~~~~~~~~~~~aD~~~~s~  162 (448)
                      |++++++      ++++|++   ++++|...|+++|.++|++||+++++|++|+.+....+...   ..+..+++++++.
T Consensus       137 l~~~~~~------~~~~v~~---~n~tG~~~~~~~i~~l~~~~~~~li~D~a~~~g~~~~~~~~---~~~~di~~~S~s~  204 (391)
T 3dr4_A          137 LEALITP------RTKAIMP---VHLYGQICDMDPILEVARRHNLLVIEDAAEAVGATYRGKKS---GSLGDCATFSFFG  204 (391)
T ss_dssp             SGGGCCT------TEEEECC---BCGGGCCCCHHHHHHHHHHTTCEEEEECTTCTTCEETTEET---TSSSSEEEEECBT
T ss_pred             HHHhcCC------CceEEEE---ECCCCChhhHHHHHHHHHHcCCEEEEECcccccceECCeee---cccCCEEEEECCC
Confidence            9998854      4666664   56899999999999999999999999999997765433211   1122245555668


Q ss_pred             ccccCCCCceEEEEEeccch
Q psy14299        163 HKMLGAPLQCSILLIKEKGL  182 (448)
Q Consensus       163 hK~l~~P~g~G~l~vr~~~~  182 (448)
                      ||++++ ...|+++.+++.+
T Consensus       205 ~K~l~~-g~gg~~~~~~~~~  223 (391)
T 3dr4_A          205 NAIITT-GEGGMITTNDDDL  223 (391)
T ss_dssp             TSSSCC-BSCEEEEESCHHH
T ss_pred             CCcCCc-CCeEEEEECCHHH
Confidence            899976 3456666655433

>3g0t_A Putative aminotransferase; NP_905498.1, putative aspartate aminotransferase, structural genomics, joint center for structural genomics; HET: MSE LLP PE4; 1.75A {Porphyromonas gingivalis}

Probab=99.87  E-value=1.5e-20  Score=192.20  Aligned_cols=304  Identities=14%  Similarity=0.076  Sum_probs=196.6

Q ss_pred             cEEEeCcHHHHHHHHHHHHH--HhcCCcccccCCCCCCCe--EEEecCCCchHHHHHHHHhCCCCCcEEEEecCC-CCCc
Q psy14299          4 KPFLLPGGSISNMYSICLAR--YRLDPDTKRKGLSHLPPL--CMFTSEDSHYSMLKAAHWLGIGMDNVIRVKTNE-RGQM   78 (448)
Q Consensus         4 ~g~~t~ggT~an~~al~~a~--~~~~~~~~~~G~~~~~~~--~Vl~~~~~H~s~~~~~~~~g~~~~~v~~v~~~~-~g~i   78 (448)
                      ..++|+|||+++..++.++.  .              +++  .|+++..+|.++...++..|.   +++.++.++ ++.+
T Consensus       107 ~i~~t~g~t~al~~~~~~l~~~~--------------~gd~~~Vl~~~p~~~~~~~~~~~~g~---~~~~v~~~~~~~~~  169 (437)
T 3g0t_A          107 ACVPTVGSMQGCFVSFLVANRTH--------------KNREYGTLFIDPGFNLNKLQCRILGQ---KFESFDLFEYRGEK  169 (437)
T ss_dssp             GEEEESHHHHHHHHHHHHHTTSC--------------TTCSCCEEEEESCCHHHHHHHHHHTC---CCEEEEGGGGCTTH
T ss_pred             cEEEeCCHHHHHHHHHHHHhcCC--------------CCCccEEEEeCCCcHhHHHHHHHcCC---EEEEEeecCCCCcc
Confidence            57999999999998887765  3              455  688889999999999999998   788999864 4479


Q ss_pred             CHHHHHHHHHHhhhcCCCcEEEEEeccCCccccccC---HHHHHHHHHHcCCEEEEecccccccccccchh--------h
Q psy14299         79 ICSFLEQTIQTSLAEKKIPLFVNATAGTTVLGAFDP---LDEIATVCEKYDLWMHVDACWGGSLIFSEKYS--------F  147 (448)
Q Consensus        79 d~e~Le~~l~~~~~~~~~~~lVv~~~~~t~tG~~~~---l~~I~~ia~~~g~~l~VD~A~~~~~~~~~~~~--------~  147 (448)
                      |+++|++++++     .++++|++++++|++|.+.|   +++|+++|++||+++++|++|+..... ....        .
T Consensus       170 d~~~l~~~l~~-----~~~~~v~l~~p~nptG~~~~~~~l~~i~~~a~~~~~~li~De~~~~~~~~-~~~~~~~~~~~~~  243 (437)
T 3g0t_A          170 LREKLESYLQT-----GQFCSIIYSNPNNPTWQCMTDEELRIIGELATKHDVIVIEDLAYFGMDFR-KDYSHPGEPLYQP  243 (437)
T ss_dssp             HHHHHHHHHTT-----TCCCEEEEESSCTTTCCCCCHHHHHHHHHHHHHTTCEEEEECTTTTCCTT-SCCCSTTSSCCCC
T ss_pred             CHHHHHHHHhc-----CCceEEEEeCCCCCCCCcCCHHHHHHHHHHHHHCCcEEEEEcchhhcccC-CCcCcccccchhh
Confidence            99999999943     25789999999999999887   777899999999999999999864432 1100        1


Q ss_pred             hhcCCCCccEEEECCccccCCC-CceEEEEEeccchhh-hhccCCcccccccCcccccccCCCCCcccCCCCchhHHHHH
Q psy14299        148 VLKGINRANSVSWNPHKMLGAP-LQCSILLIKEKGLLH-QANATAATYLFQQDKFYDVSFDTGDKSVQCGRKVDAFKLWL  225 (448)
Q Consensus       148 ~~~~~~~aD~~~~s~hK~l~~P-~g~G~l~vr~~~~~~-~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  225 (448)
                      .+.+....++++.++||+++.| ..+|++++++ .+.. ........+...                    .        
T Consensus       244 ~~~~~~~~~i~~~s~sK~~~~~G~r~G~~~~~~-~~~~~~~~~~~~~~~~~--------------------~--------  294 (437)
T 3g0t_A          244 SVANYTDNYILALSSSKAFSYAGQRIGVLMISG-KLYEREYPDLEESFGRL--------------------R--------  294 (437)
T ss_dssp             CGGGTCSCEEEEEESTTTTSCGGGCCEEEEECH-HHHHCBCGGGHHHHSCS--------------------B--------
T ss_pred             ccCCCCCcEEEEEcCccCCCCccceeEEEEECH-HHhhhhhhccccccccc--------------------c--------
Confidence            1122224568899999998733 4578887754 3332 210000000000                    0        


Q ss_pred             HHHHhChHHHHHHHHHhhhhccCCCccchhhhhhhhhhhhhhhhhhhhhhhccccccccccCCCCCccccccchhhHHHH
Q psy14299        226 MWKARGNLGFRHFVDNAVDCSRGSMTFSTLLCFDLQGLLHQANATAATYLFQQDKFYDVSFDTGDKSVQCGRKVDAFKLW  305 (448)
Q Consensus       226 ~~~~~g~~g~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  305 (448)
                             .. ...+.+....                                              ...+.+.+.+..+.
T Consensus       295 -------~~-~~~~~~~~~~----------------------------------------------~~~~~~~~~~~a~~  320 (437)
T 3g0t_A          295 -------FG-EALSSSALYA----------------------------------------------LSSGATHSAQWGMA  320 (437)
T ss_dssp             -------HH-HHHHTTHHHH----------------------------------------------HHSSSCHHHHHHHH
T ss_pred             -------hh-HHHHHHHHhh----------------------------------------------hcCCCCHHHHHHHH
Confidence                   00 0000000000                                              00012222333334


Q ss_pred             HHHHHhc--CccHHHHHHHHHHHHHHHHHHhhcCCCeEEec-----cCCceeeEEEEeeccCCCccccchhhhhhhhhhh
Q psy14299        306 LMWKARG--NLGFRHFVDNAVDCSRYFLSQISQRPGFRLVI-----PEFQCTNICFWFIPVSLRDKVEDETWWSTLSKVA  378 (448)
Q Consensus       306 ~~~~~~~--~~G~~~~~~~~~~l~~~~~~~L~~~pg~~l~~-----~~~~~~~v~f~~~~~~~~~~~~~~~~~~~~~~~~  378 (448)
                      .+++...  ...++++.++..++++++.+.|+++ |++++.     .++..+.+.+...+ +.+               .
T Consensus       321 ~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~-g~~~~~~~~~~~~~~~~~~~~~~~~-~~~---------------~  383 (437)
T 3g0t_A          321 AMLKACNDGEYNFRDSVIEYGRKARIMKKMFLDN-GFNIVYDKDGNEPLADGFYFTVGYK-GMD---------------S  383 (437)
T ss_dssp             HHHHHHHTTSCCHHHHHHHHHHHHHHHHHHHHTT-TEEESSCEETTEECCSSSEEEEEET-TCC---------------H
T ss_pred             HHHhCcHhHHHHHHHHHHHHHHHHHHHHHHHHHc-CCEEeccccCCCCCceeEEEEEecC-CCC---------------H
Confidence            4444422  1227889999999999999999999 998740     02133333332212 222               2


Q ss_pred             HHHHHHHHhCCcEEEEeeecCCcccccEEEEEecCCCCCCHHHHHHHHHHHHHHHH
Q psy14299        379 PRIKEKLVLGGTLMIGYQPLQHRNLHNFFRLVTTCHPASSRQDMDYAIDQIELRGA  434 (448)
Q Consensus       379 ~~i~~~L~~~g~~~~~~~~~~g~~~~~~lRis~~~~~~~t~edid~l~~al~~~~~  434 (448)
                      .++.+.|.++| +.+.+....+...++++|+|+  + +.+++|+++++++|+++.+
T Consensus       384 ~~l~~~L~~~g-i~v~~~~~~~~~~~~~iRis~--~-~~~~e~i~~~~~~l~~~~~  435 (437)
T 3g0t_A          384 SKLIEKFVRYG-MCAITLKTTGSKRNEAMRICT--S-LLPESQFPDLEKRLQMLNA  435 (437)
T ss_dssp             HHHHHHHHHTT-EECEESTTTTCCCTTCEEEEC--S-SSCGGGHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHcC-eEEeeccccCCCCCCEEEEEE--e-cCCHHHHHHHHHHHHHHHh
Confidence            37889999998 555555443332226899999  4 4499999999999998865

>2a7v_A Serine hydroxymethyltransferase; structural genomics, structural genomics consortium, SGC; 2.04A {Homo sapiens} PDB: 3ou5_A

Probab=99.87  E-value=1.5e-20  Score=195.72  Aligned_cols=301  Identities=16%  Similarity=0.114  Sum_probs=176.2

Q ss_pred             EEeCcHHHHHHHHHHHHHHhcCCcccccCCCCCCCeEEEecCCCchHHH------H--HHHHhCCCCCcEEEEecC-CCC
Q psy14299          6 FLLPGGSISNMYSICLARYRLDPDTKRKGLSHLPPLCMFTSEDSHYSML------K--AAHWLGIGMDNVIRVKTN-ERG   76 (448)
Q Consensus         6 ~~t~ggT~an~~al~~a~~~~~~~~~~~G~~~~~~~~Vl~~~~~H~s~~------~--~~~~~g~~~~~v~~v~~~-~~g   76 (448)
                      +++++||+||+.++.+..+              |++.|++++.+|.+..      .  .+.+.|... .+..++++ +++
T Consensus       124 v~~~sGt~An~~al~al~~--------------pGD~Vl~~~~~h~g~l~h~~~~~~~~i~~~g~~~-~~~~~~vd~~~~  188 (490)
T 2a7v_A          124 VQPYSGSPANLAVYTALLQ--------------PHDRIMGLDLPDGGHLTHGYMSDVKRISATSIFF-ESMPYKLNPKTG  188 (490)
T ss_dssp             CCCSSHHHHHHHHHHHHCC--------------SCEECCC--------------------------------CCBCTTTC
T ss_pred             EeCCchHHHHHHHHHHHcC--------------CCCEecccCccccccccchhhhcchhHHHcCCeE-EEEecccccccC
Confidence            5667999999999877643              7888999988875432      1  233445421 23344455 468


Q ss_pred             CcCHHHHHHHHHHhhhcCCCcEEEEEeccCCccccccCHHHHHHHHHHcCCEEEEecccccccccccchhhhhcCCCCcc
Q psy14299         77 QMICSFLEQTIQTSLAEKKIPLFVNATAGTTVLGAFDPLDEIATVCEKYDLWMHVDACWGGSLIFSEKYSFVLKGINRAN  156 (448)
Q Consensus        77 ~id~e~Le~~l~~~~~~~~~~~lVv~~~~~t~tG~~~~l~~I~~ia~~~g~~l~VD~A~~~~~~~~~~~~~~~~~~~~aD  156 (448)
                      .+|+++|++++.+.     +|++|++..+.  +|...|+++|.++|++||+++|+|+||+.+..........+   ..+|
T Consensus       189 ~iD~d~le~~l~~~-----~~klIi~~~s~--~~~~~dl~~i~~ia~~~g~~livD~Ah~~glv~~g~~~~~~---~~aD  258 (490)
T 2a7v_A          189 LIDYNQLALTARLF-----RPRLIIAGTSA--YARLIDYARMREVCDEVKAHLLADMAHISGLVAAKVIPSPF---KHAD  258 (490)
T ss_dssp             SBCHHHHHHHHHHH-----CCSEEEECCSS--CCSCCCHHHHHHHHHHTTCEEEEECGGGHHHHHTTSSCCGG---GTCS
T ss_pred             CcCHHHHHHHHhhc-----CCcEEEEcCCC--CCCcccHHHHHHHHHHcCCEEEEccccccccccCCcCCCCC---CCCC
Confidence            99999999999752     46777665444  46778999999999999999999999987654322211112   2479


Q ss_pred             EEEECCccccCCCCceEEEEEeccchhhhhcc-CCcccccccCcccccccCCCCCcccCCCCchhHHHHHHHHHhChHHH
Q psy14299        157 SVSWNPHKMLGAPLQCSILLIKEKGLLHQANA-TAATYLFQQDKFYDVSFDTGDKSVQCGRKVDAFKLWLMWKARGNLGF  235 (448)
Q Consensus       157 ~~~~s~hK~l~~P~g~G~l~vr~~~~~~~~~~-~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~g~  235 (448)
                      ++++++||+|++|.| |++++++. +...-.. ....++.                                       +
T Consensus       259 iv~~S~hK~l~Gp~G-G~i~~~~~-~~~~~~~~~~~~~~~---------------------------------------l  297 (490)
T 2a7v_A          259 IVTTTTHKTLRGARS-GLIFYRKG-VKAVDPKTGREIPYT---------------------------------------F  297 (490)
T ss_dssp             EEEEESSGGGCSCSC-EEEEEECS-EEEEETTTEEEEECC---------------------------------------C
T ss_pred             EEEECCcccCccccc-hheeeccc-hhcccccccchhhHH---------------------------------------H
Confidence            999999999999987 88777664 1100000 0000000                                       0


Q ss_pred             HHHHHHhhhhccCCCccchhhhhhhhhhhhhhhhhhhhhhhccccccccccCCCCCcccccc-chhhHHHHHHHHHhcCc
Q psy14299        236 RHFVDNAVDCSRGSMTFSTLLCFDLQGLLHQANATAATYLFQQDKFYDVSFDTGDKSVQCGR-KVDAFKLWLMWKARGNL  314 (448)
Q Consensus       236 ~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~  314 (448)
                      ...++..+-                                .              -.+.++ ...+.++.++++....+
T Consensus       298 ~~~i~~~~~--------------------------------~--------------g~qggp~~~~iaAla~Al~~~~~~  331 (490)
T 2a7v_A          298 EDRINFAVF--------------------------------P--------------SLQGGPHNHAIAAVAVALKQACTP  331 (490)
T ss_dssp             HHHHHHHHT--------------------------------T--------------TTCCSCCHHHHHHHHHHHHHHHSH
T ss_pred             HHHHHHHhc--------------------------------c--------------cCCCCchHHHHHHHHHHHHHHhhh
Confidence            000000000                                0              000001 11122334455555555


Q ss_pred             cHHHHHHHHHHHHHHHHHHhhcCCCeEEeccCCceeeEEEEeeccCCCccccchhhhhhhhhhhHHHHHHHHhCCcEEEE
Q psy14299        315 GFRHFVDNAVDCSRYFLSQISQRPGFRLVIPEFQCTNICFWFIPVSLRDKVEDETWWSTLSKVAPRIKEKLVLGGTLMIG  394 (448)
Q Consensus       315 G~~~~~~~~~~l~~~~~~~L~~~pg~~l~~~~~~~~~v~f~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~L~~~g~~~~~  394 (448)
                      .++++.++..++++++.+.|++. |++++......+++.+.+.+.+++               ..++.+.|.+.| +.+.
T Consensus       332 ~~~~~~~~~~~na~~L~~~L~~~-G~~v~~~~t~t~lv~vdl~~~g~~---------------~~~~~~~L~~~G-I~v~  394 (490)
T 2a7v_A          332 MFREYSLQVLKNARAMADALLER-GYSLVSGGTDNHLVLVDLRPKGLD---------------GARAERVLELVS-ITAN  394 (490)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHT-TCEEGGGSCSSSEEEEECTTTTCC---------------HHHHHHHHHHTT-EECE
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHc-CcEEecCCCCCeEEEEEeCCCCCC---------------HHHHHHHHHhCC-eEEe
Confidence            66888899999999999999997 999872123445565655443333               136777888888 5555


Q ss_pred             eeecCC-c--ccccEEEEEecC--CCCCCHHHHHHHHHHHHHHHHH
Q psy14299        395 YQPLQH-R--NLHNFFRLVTTC--HPASSRQDMDYAIDQIELRGAE  435 (448)
Q Consensus       395 ~~~~~g-~--~~~~~lRis~~~--~~~~t~edid~l~~al~~~~~~  435 (448)
                      .....+ .  -.+..+|+++.+  +...+++|+++++++|.++.+.
T Consensus       395 ~~~~p~d~~p~~~~~iRig~~a~t~~g~~~~d~~~~~~~i~~~l~~  440 (490)
T 2a7v_A          395 KNTCPGDRSAITPGGLRLGAPALTSRQFREDDFRRVVDFIDEGVNI  440 (490)
T ss_dssp             EECCTTCCCSSSCSEEEEESHHHHHTTCCHHHHHHHHHHHHHHHHH
T ss_pred             cCccCCCCCCCCCCceEecccccccCCCCHHHHHHHHHHHHHHHHh
Confidence            432222 1  123689997621  3457899999999999988763

>3ly1_A Putative histidinol-phosphate aminotransferase; structural G joint center for structural genomics, JCSG; HET: MSE PLP CIT; 1.80A {Erwinia carotovora atroseptica}

Probab=99.86  E-value=2.9e-20  Score=184.63  Aligned_cols=277  Identities=12%  Similarity=0.047  Sum_probs=190.9

Q ss_pred             cEEEeCcHHHHHHHHHHHHHHhcCCcccccCCCCCCCeEEEecCCCchHHHHHHHHhCCCCCcEEEEecCCCCCcCHHHH
Q psy14299          4 KPFLLPGGSISNMYSICLARYRLDPDTKRKGLSHLPPLCMFTSEDSHYSMLKAAHWLGIGMDNVIRVKTNERGQMICSFL   83 (448)
Q Consensus         4 ~g~~t~ggT~an~~al~~a~~~~~~~~~~~G~~~~~~~~Vl~~~~~H~s~~~~~~~~g~~~~~v~~v~~~~~g~id~e~L   83 (448)
                      ..++|+|||+++..++.+...              +++.|+++...|.++...++..|.   +++.+|.++++.+|+++|
T Consensus        70 ~i~~~~g~~~a~~~~~~~l~~--------------~gd~vl~~~~~~~~~~~~~~~~g~---~~~~~~~~~~~~~d~~~l  132 (354)
T 3ly1_A           70 SILLTAGSSEGIRAAIEAYAS--------------LEAQLVIPELTYGDGEHFAKIAGM---KVTKVKMLDNWAFDIEGL  132 (354)
T ss_dssp             GEEEESHHHHHHHHHHHHHCC--------------TTCEEEEESSSCTHHHHHHHHTTC---EEEEECCCTTSCCCHHHH
T ss_pred             HEEEeCChHHHHHHHHHHHhC--------------CCCeEEECCCCchHHHHHHHHcCC---EEEEecCCCCCCCCHHHH
Confidence            578999999999888876533              567788999999999999999998   899999988899999999


Q ss_pred             HHHHHHhhhcCCCcEEEEEeccCCccccccCHHHHHHHHHH--cCCEEEEeccccccccccc--chhhhhcCCCCccEEE
Q psy14299         84 EQTIQTSLAEKKIPLFVNATAGTTVLGAFDPLDEIATVCEK--YDLWMHVDACWGGSLIFSE--KYSFVLKGINRANSVS  159 (448)
Q Consensus        84 e~~l~~~~~~~~~~~lVv~~~~~t~tG~~~~l~~I~~ia~~--~g~~l~VD~A~~~~~~~~~--~~~~~~~~~~~aD~~~  159 (448)
                      ++++++    +.++++|++++++|++|.+.|++++.++++.  ||+++++|++|+.......  ............++++
T Consensus       133 ~~~l~~----~~~~~~v~l~~p~nptG~~~~~~~l~~l~~~~~~~~~li~De~~~~~~~~~~~~~~~~~~~~~~~~~i~~  208 (354)
T 3ly1_A          133 KAAVAA----YSGPSIVYLVNPNNPTGTITPADVIEPWIASKPANTMFIVDEAYAEFVNDPRFRSISPMITQGAENIILL  208 (354)
T ss_dssp             HHHHHT----CSSCEEEEEESSCTTTCCCCCHHHHHHHHHTCCTTEEEEEECTTGGGCCCTTCCCSHHHHHTTCSSEEEE
T ss_pred             HHHhcc----CCCCCEEEEeCCCCCcCCCcCHHHHHHHHHhCCCCeEEEEeccHHHhccccccCCHHHHhhhcCCCEEEE
Confidence            999973    1258899999999999999999999888888  9999999999986543211  0011111111345888


Q ss_pred             ECCccccCCC-CceEEEEEeccchhhhhccCCcccccccCcccccccCCCCCcccCCCCchhHHHHHHHHHhChHHHHHH
Q psy14299        160 WNPHKMLGAP-LQCSILLIKEKGLLHQANATAATYLFQQDKFYDVSFDTGDKSVQCGRKVDAFKLWLMWKARGNLGFRHF  238 (448)
Q Consensus       160 ~s~hK~l~~P-~g~G~l~vr~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~g~~~~  238 (448)
                      .|+||+++.| .++|+++.+ +.+..........+  .                     ......+++            
T Consensus       209 ~s~sK~~g~~G~r~G~~~~~-~~~~~~~~~~~~~~--~---------------------~~~~~~~a~------------  252 (354)
T 3ly1_A          209 KTFSKIHAMAGMRVGYAVAH-PTVIALMGRYVAGE--K---------------------INFSGVDAA------------  252 (354)
T ss_dssp             EESSSTTCCGGGCCEEEECC-HHHHHHHGGGTTCS--C---------------------CCHHHHHHH------------
T ss_pred             eeChhhccChhhhheeeecC-HHHHHHHHHhcCCC--C---------------------CCHHHHHHH------------
Confidence            9999999733 457877763 34333322111100  0                     001111111            


Q ss_pred             HHHhhhhccCCCccchhhhhhhhhhhhhhhhhhhhhhhccccccccccCCCCCccccccchhhHHHHHHHHHhcCccHHH
Q psy14299        239 VDNAVDCSRGSMTFSTLLCFDLQGLLHQANATAATYLFQQDKFYDVSFDTGDKSVQCGRKVDAFKLWLMWKARGNLGFRH  318 (448)
Q Consensus       239 i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~  318 (448)
                                                                                        ..+++  ..+++++
T Consensus       253 ------------------------------------------------------------------~~~l~--~~~~~~~  264 (354)
T 3ly1_A          253 ------------------------------------------------------------------LASMN--DSAFITY  264 (354)
T ss_dssp             ------------------------------------------------------------------HHHTT--CHHHHHH
T ss_pred             ------------------------------------------------------------------HHHhc--CHHHHHH
Confidence                                                                              11111  1134667


Q ss_pred             HHHHHHHHHHHHHHHhhcCCCeEEeccCCceeeEEEEeeccCCCccccchhhhhhhhhhhHHHHHHHHhCCcEEEEeeec
Q psy14299        319 FVDNAVDCSRYFLSQISQRPGFRLVIPEFQCTNICFWFIPVSLRDKVEDETWWSTLSKVAPRIKEKLVLGGTLMIGYQPL  398 (448)
Q Consensus       319 ~~~~~~~l~~~~~~~L~~~pg~~l~~~~~~~~~v~f~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~L~~~g~~~~~~~~~  398 (448)
                      +.++..++++++.+.|+++ |++++  ++..+.+.+.+ +.  +               ..++.+.|.++| +.+. +..
T Consensus       265 ~~~~~~~~~~~l~~~l~~~-~~~~~--~~~~~~~~~~~-~~--~---------------~~~~~~~l~~~g-i~v~-g~~  321 (354)
T 3ly1_A          265 SKKSNDVSRQILLKALEDL-KLPYL--PSEGNFVFHQL-VV--P---------------LKDYQTHMADAG-VLIG-RAF  321 (354)
T ss_dssp             HHHHHHHHHHHHHHHHHHH-TCCBC--CCCSSEEEEEC-SS--C---------------HHHHHHHHHHTT-EECC-CCC
T ss_pred             HHHHHHHHHHHHHHHHHHC-CCeEC--CCCceEEEEEC-CC--C---------------HHHHHHHHHHCC-EEEe-ecC
Confidence            7788888999999999988 88764  33444444432 11  1               237888899998 4444 333


Q ss_pred             CCcccccEEEEEecCCCCCCHHHHHHHHHHHHHHHHH
Q psy14299        399 QHRNLHNFFRLVTTCHPASSRQDMDYAIDQIELRGAE  435 (448)
Q Consensus       399 ~g~~~~~~lRis~~~~~~~t~edid~l~~al~~~~~~  435 (448)
                      .+  .++++|+++  +   +++|+++++++|+++.++
T Consensus       322 ~~--~~~~iRis~--~---~~~~i~~~~~~l~~~l~~  351 (354)
T 3ly1_A          322 PP--ADNWCRISL--G---TPQEMQWVADTMREFRKK  351 (354)
T ss_dssp             TT--CTTEEEEEC--C---CHHHHHHHHHHHHHHHHT
T ss_pred             CC--CCCEEEEEc--C---CHHHHHHHHHHHHHHHHh
Confidence            22  247999998  3   799999999999998764

>2c0r_A PSAT, phosphoserine aminotransferase; pyridoxal-5'-phosphate, pyridine serine biosynthesis, amino-acid biosynthesis, pyridoxal phosphate; HET: PLP; 1.2A {Bacillus circulans} SCOP: c.67.1.4 PDB: 1bt4_A* 1w3u_A*

Probab=99.86  E-value=7.7e-21  Score=189.64  Aligned_cols=278  Identities=14%  Similarity=0.075  Sum_probs=183.3

Q ss_pred             EEEeCcHHHHHHHHHHHHHHhcCCcccccCCCCCCCeEEEecCCCchH--HHHHHHHhCCCCCcEEEEecCC---CC-Cc
Q psy14299          5 PFLLPGGSISNMYSICLARYRLDPDTKRKGLSHLPPLCMFTSEDSHYS--MLKAAHWLGIGMDNVIRVKTNE---RG-QM   78 (448)
Q Consensus         5 g~~t~ggT~an~~al~~a~~~~~~~~~~~G~~~~~~~~Vl~~~~~H~s--~~~~~~~~g~~~~~v~~v~~~~---~g-~i   78 (448)
                      .++|+|||+++..++.+...              +++.|++....|++  +...++..| .   ++.++.+.   .+ .+
T Consensus        71 i~~t~g~t~a~~~~~~~l~~--------------~gd~vl~~~~~~~~~~~~~~~~~~g-~---~~~v~~~~~~~~~~~~  132 (362)
T 2c0r_A           71 LFIQGGASTQFAMIPMNFLK--------------EGQTANYVMTGSWASKALKEAKLIG-D---THVAASSEASNYMTLP  132 (362)
T ss_dssp             EEESSHHHHHHHHHHHHHCC--------------TTCEEEEEECSHHHHHHHHHHHHHS-C---EEEEEECGGGTTCSCC
T ss_pred             EEECCCchHHHHHHHHhcCC--------------CCCeEEEEecCcHhHHHHHHHHHhC-C---eEEEecccccccccCC
Confidence            35779999999888776543              45666666566665  345666666 3   56677652   22 35


Q ss_pred             CHHHHHHHHHHhhhcCCCcEEEEEeccCCcccc-ccCHHHHHHHHHHcCCEEEEecccccccccccchhhhhcCCCCccE
Q psy14299         79 ICSFLEQTIQTSLAEKKIPLFVNATAGTTVLGA-FDPLDEIATVCEKYDLWMHVDACWGGSLIFSEKYSFVLKGINRANS  157 (448)
Q Consensus        79 d~e~Le~~l~~~~~~~~~~~lVv~~~~~t~tG~-~~~l~~I~~ia~~~g~~l~VD~A~~~~~~~~~~~~~~~~~~~~aD~  157 (448)
                      |.++++  +.      .++++|++++++|+||. +.|+++|      ||++++||++|+.+..+.+     +.   ..|+
T Consensus       133 ~~~~~~--i~------~~t~~v~~~~~~n~tG~~~~~l~~i------~~~~vivD~a~~~~~~~~~-----~~---~~d~  190 (362)
T 2c0r_A          133 KLQEIQ--LQ------DNAAYLHLTSNETIEGAQFKAFPDT------GSVPLIGDMSSDILSRPFD-----LN---QFGL  190 (362)
T ss_dssp             CGGGCC--CC------TTEEEEEEESEETTTTEECSSCCCC------TTSCEEEECTTTTTSSCCC-----GG---GCSE
T ss_pred             CHHHcc--cC------CCcCEEEEeCCcCccceeccccccc------CCCEEEEEChhhccCCccc-----hh---HCcE
Confidence            666653  42      35899999999999999 4889887      8999999999998865432     11   2389


Q ss_pred             EEECCccccCCCCceEEEEEeccchhhhhccCCcccccccCcccccccCCCCCcccCCCCchhHHHHHHHHHhChHHHHH
Q psy14299        158 VSWNPHKMLGAPLQCSILLIKEKGLLHQANATAATYLFQQDKFYDVSFDTGDKSVQCGRKVDAFKLWLMWKARGNLGFRH  237 (448)
Q Consensus       158 ~~~s~hK~l~~P~g~G~l~vr~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~g~~~  237 (448)
                      ++.++|||++ |.|+|+++++++ +........+.++...                                    +...
T Consensus       191 ~~~s~~K~~g-~~G~G~l~~~~~-~~~~l~~~~~~~~~~~------------------------------------~~~~  232 (362)
T 2c0r_A          191 VYAGAQKNLG-PSGVTVVIVRED-LVAESPKHLPTMLRYD------------------------------------TYVK  232 (362)
T ss_dssp             EEEETTTTTC-CSSCEEEEEEGG-GSSSCCTTSCGGGCHH------------------------------------HHHH
T ss_pred             EEEecccccc-CcCcEEEEEcHH-HHhhccccCchHHhHH------------------------------------HHhh
Confidence            9999999996 888999999764 3322211111111000                                    0000


Q ss_pred             HHHHhhhhccCCCccchhhhhhhhhhhhhhhhhhhhhhhccccccccccCCCCCccccccchhhHHHHHHHHHhcCc-cH
Q psy14299        238 FVDNAVDCSRGSMTFSTLLCFDLQGLLHQANATAATYLFQQDKFYDVSFDTGDKSVQCGRKVDAFKLWLMWKARGNL-GF  316 (448)
Q Consensus       238 ~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-G~  316 (448)
                                                                         .+....+.+.+.+.++..+++....+ |+
T Consensus       233 ---------------------------------------------------~~~~~~t~~~~~~~a~~~al~~~~~~~~~  261 (362)
T 2c0r_A          233 ---------------------------------------------------NNSLYNTPPSFGIYMVNEVLKWIEERGGL  261 (362)
T ss_dssp             ---------------------------------------------------TTTCSSCCCHHHHHHHHHHHHHHHHTTHH
T ss_pred             ---------------------------------------------------ccCcCCCchHHHHHHHHHHHHHHHHhCCH
Confidence                                                               00000122334456666777776666 79


Q ss_pred             HHHHHHHHHHHHHHHHHhhcCCCe-EEeccCC---ceeeEEEEeeccCCCccccchhhhhhhhhhhHHHHHHHHhCCcEE
Q psy14299        317 RHFVDNAVDCSRYFLSQISQRPGF-RLVIPEF---QCTNICFWFIPVSLRDKVEDETWWSTLSKVAPRIKEKLVLGGTLM  392 (448)
Q Consensus       317 ~~~~~~~~~l~~~~~~~L~~~pg~-~l~~~~~---~~~~v~f~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~L~~~g~~~  392 (448)
                      +++.++..++++++.+.|++++++ +++ .++   ..+++.|.+ |.+.               ...++.+.|.++|+ .
T Consensus       262 ~~~~~~~~~~~~~l~~~L~~~~~~~~~~-~~~~~~~~~~~~~~~-~~~~---------------~~~~~~~~L~~~gi-~  323 (362)
T 2c0r_A          262 EGVQQANRKKASLIYDAIDQSGGFYRGC-VDVDSRSDMNITFRL-ASEE---------------LEKEFVKASEQEGF-V  323 (362)
T ss_dssp             HHHHHHHHHHHHHHHHHHHTSTTSSEES-SCGGGBCSSEEEEEC-SCHH---------------HHHHHHHHHHHTTE-E
T ss_pred             HHHHHHHHHHHHHHHHHHHHcCCccccC-CChHHcCCcEEEEEc-CCcc---------------hHHHHHHHHHHCCC-e
Confidence            999999999999999999999546 875 322   234555543 1111               12478888989994 4


Q ss_pred             EEeeecCCcccccEEEEEecCCCCCCHHHHHHHHHHHHHHHHH
Q psy14299        393 IGYQPLQHRNLHNFFRLVTTCHPASSRQDMDYAIDQIELRGAE  435 (448)
Q Consensus       393 ~~~~~~~g~~~~~~lRis~~~~~~~t~edid~l~~al~~~~~~  435 (448)
                      +.++...    .+++|+|+  +.++++||+++++++|+++.++
T Consensus       324 ~~~g~~~----~~~iRis~--~~~~~~e~i~~l~~~l~~~~~~  360 (362)
T 2c0r_A          324 GLKGHRS----VGGLRASI--YNAVPYESCEALVQFMEHFKRS  360 (362)
T ss_dssp             SCBCCTT----TCSEEEEC--CTTSCHHHHHHHHHHHHHHHHH
T ss_pred             eccCCCC----CCEEEEEC--CCCCCHHHHHHHHHHHHHHHHh
Confidence            3332211    25799999  5789999999999999998764

>3dyd_A Tyrosine aminotransferase; PLP, SGC, structural genomics, structural genomics consortium, disease mutation, phenylalani catabolism; HET: PLP; 2.30A {Homo sapiens} PDB: 3pdx_A*

Probab=99.86  E-value=2.7e-20  Score=190.53  Aligned_cols=293  Identities=13%  Similarity=0.040  Sum_probs=195.4

Q ss_pred             cEEEeCcHHHHHHHHHHHHHHhcCCcccccCCCCCCCeEEEecCCCchHHHHHHHHhCCCCCcEEEEecCC--CCCcCHH
Q psy14299          4 KPFLLPGGSISNMYSICLARYRLDPDTKRKGLSHLPPLCMFTSEDSHYSMLKAAHWLGIGMDNVIRVKTNE--RGQMICS   81 (448)
Q Consensus         4 ~g~~t~ggT~an~~al~~a~~~~~~~~~~~G~~~~~~~~Vl~~~~~H~s~~~~~~~~g~~~~~v~~v~~~~--~g~id~e   81 (448)
                      ..++|+|||+++.+++..+++              +++.|+++..+|..+...++..|.   +++.++.++  ++.+|++
T Consensus       120 ~v~~t~g~t~al~~~~~~l~~--------------~gd~vl~~~p~~~~~~~~~~~~g~---~~~~~~~~~~~~~~~d~~  182 (427)
T 3dyd_A          120 DVILTSGCSQAIDLCLAVLAN--------------PGQNILVPRPGFSLYKTLAESMGI---EVKLYNLLPEKSWEIDLK  182 (427)
T ss_dssp             GEEEESSHHHHHHHHHHHHCC--------------TTCEEEEEESCCTHHHHHHHHTTC---EEEEEEEEGGGTTEECHH
T ss_pred             HEEEecCcHHHHHHHHHHhcC--------------CCCEEEEcCCCchhHHHHHHHcCC---EEEEEecccccCCCCCHH
Confidence            579999999999988877643              566788899999999999999998   788888753  5689999


Q ss_pred             HHHHHHHHhhhcCCCcEEEEEeccCCccccccC---HHHHHHHHHHcCCEEEEecccccccccccchhhhhcCCC-Ccc-
Q psy14299         82 FLEQTIQTSLAEKKIPLFVNATAGTTVLGAFDP---LDEIATVCEKYDLWMHVDACWGGSLIFSEKYSFVLKGIN-RAN-  156 (448)
Q Consensus        82 ~Le~~l~~~~~~~~~~~lVv~~~~~t~tG~~~~---l~~I~~ia~~~g~~l~VD~A~~~~~~~~~~~~~~~~~~~-~aD-  156 (448)
                      +|++++++      ++++|++++++|++|.+.|   +++|+++|++||+++++|++|+........... +..+. ..+ 
T Consensus       183 ~l~~~l~~------~~~~v~i~~p~nptG~~~~~~~l~~i~~~~~~~~~~~i~Deay~~~~~~g~~~~~-~~~~~~~~~v  255 (427)
T 3dyd_A          183 QLEYLIDE------KTACLIVNNPSNPCGSVFSKRHLQKILAVAARQCVPILADEIYGDMVFSDCKYEP-LATLSTDVPI  255 (427)
T ss_dssp             HHHSSCCT------TEEEEEEESSCTTTCCCCCHHHHHHHHHHHHHTTCCEEEECTTTTCBCSSCCCCC-GGGGCSSCCE
T ss_pred             HHHHHhcc------CCCEEEEECCCCCCCCCCCHHHHHHHHHHHHHCCCEEEEEcCchhhccCCCcCcc-HHHhCCCCcE
Confidence            99998854      4789999999999999999   999999999999999999999875432111100 01111 122 


Q ss_pred             EEEECCccccCCC-CceEEEEEeccchh-h-hhccCCcccccccCcccccccCCCCCcccCCCCchhHHHHHHHHHhChH
Q psy14299        157 SVSWNPHKMLGAP-LQCSILLIKEKGLL-H-QANATAATYLFQQDKFYDVSFDTGDKSVQCGRKVDAFKLWLMWKARGNL  233 (448)
Q Consensus       157 ~~~~s~hK~l~~P-~g~G~l~vr~~~~~-~-~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~  233 (448)
                      +++.|++|.++.| ..+|+++++++... . ...                                              
T Consensus       256 i~~~S~sK~~~~~G~riG~~~~~~~~~~~~~~i~----------------------------------------------  289 (427)
T 3dyd_A          256 LSCGGLAKRWLVPGWRLGWILIHDRRDIFGNEIR----------------------------------------------  289 (427)
T ss_dssp             EEEEESTTTSSCGGGCCEEEEEECSTTSSHHHHH----------------------------------------------
T ss_pred             EEEeeccccCCCcCcceEEEEecCcchhhHHHHH----------------------------------------------
Confidence            5566999987654 24788887653110 0 000                                              


Q ss_pred             HHHHHHHHhhhhccCCCccchhhhhhhhhhhhhhhhhhhhhhhccccccccccCCCCCccccccchhhHHHHHHHHHhcC
Q psy14299        234 GFRHFVDNAVDCSRGSMTFSTLLCFDLQGLLHQANATAATYLFQQDKFYDVSFDTGDKSVQCGRKVDAFKLWLMWKARGN  313 (448)
Q Consensus       234 g~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  313 (448)
                         ..+.....                                               ...+++.+.+..+..+++....
T Consensus       290 ---~~l~~~~~-----------------------------------------------~~~~~~~~~~~a~~~~L~~~~~  319 (427)
T 3dyd_A          290 ---DGLVKLSQ-----------------------------------------------RILGPCTIVQGALKSILCRTPG  319 (427)
T ss_dssp             ---HHHHHHHH-----------------------------------------------HHCCSCHHHHHHHHHHHHHSCH
T ss_pred             ---HHHHHHHh-----------------------------------------------ccCCCCHHHHHHHHHHHHhcCH
Confidence               00000000                                               0001122223334444554445


Q ss_pred             ccHHHHHHHHHHHHHHHHHHhhcCCCeEEeccCCceeeEEE-EeeccCCCccccchhhhhhhhhhhHHHHHHHH-hCCcE
Q psy14299        314 LGFRHFVDNAVDCSRYFLSQISQRPGFRLVIPEFQCTNICF-WFIPVSLRDKVEDETWWSTLSKVAPRIKEKLV-LGGTL  391 (448)
Q Consensus       314 ~G~~~~~~~~~~l~~~~~~~L~~~pg~~l~~~~~~~~~v~f-~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~L~-~~g~~  391 (448)
                      ++++++.++..++++++.+.|+++||++++ . +..+.+.+ .+......+.           ....++.+.|. ++| +
T Consensus       320 ~~~~~~~~~~~~~~~~l~~~L~~~~g~~~~-~-p~~g~~~~~~l~~~~~~~~-----------~~~~~~~~~l~~~~g-V  385 (427)
T 3dyd_A          320 EFYHNTLSFLKSNADLCYGALAAIPGLRPV-R-PSGAMYLMVGIEMEHFPEF-----------ENDVEFTERLVAEQS-V  385 (427)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHSTTEEEE-C-CSBTTEEEEEECGGGCTTC-----------SSHHHHHHHHHHHHC-E
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhcCCCceec-C-CCeeEEEEEecCHhhcCCC-----------CCHHHHHHHHHHHCC-E
Confidence            677888889999999999999999999876 3 44444443 3321111100           01236777876 678 5


Q ss_pred             EEEeeecCCcccccEEEEEecCCCCCCHHHHHHHHHHHHHHHHHh
Q psy14299        392 MIGYQPLQHRNLHNFFRLVTTCHPASSRQDMDYAIDQIELRGAEV  436 (448)
Q Consensus       392 ~~~~~~~~g~~~~~~lRis~~~~~~~t~edid~l~~al~~~~~~~  436 (448)
                      .+.++...+.  ++++|+++  .  +++++++++++.|+++.+++
T Consensus       386 ~v~~g~~~~~--~~~iRis~--~--~~~e~i~~~l~~l~~~l~~~  424 (427)
T 3dyd_A          386 HCLPATCFEY--PNFIRVVI--T--VPEVMMLEACSRIQEFCEQH  424 (427)
T ss_dssp             ECEEGGGGTC--TTEEEEES--C--SCHHHHHHHHHHHHHHHHHH
T ss_pred             EEECCcccCC--CCeEEEEE--C--CCHHHHHHHHHHHHHHHHHh
Confidence            5554432221  37999998  3  68999999999999988764

>1iay_A ACC synthase 2, 1-aminocyclopropane-1-carboxylate synthase 2; protein-cofactor-inhibitor complex, V6-dependent enzyme, LYA; HET: PLP AVG; 2.70A {Solanum lycopersicum} SCOP: c.67.1.4 PDB: 1iax_A*

Probab=99.86  E-value=4.1e-20  Score=188.83  Aligned_cols=298  Identities=10%  Similarity=0.094  Sum_probs=190.4

Q ss_pred             cEEEeCcHHHHHHHHHHHHHHhcCCcccccCCCCCCCeEEEecCCCchHHHHHHH-HhCCCCCcEEEEecCC--CCCcCH
Q psy14299          4 KPFLLPGGSISNMYSICLARYRLDPDTKRKGLSHLPPLCMFTSEDSHYSMLKAAH-WLGIGMDNVIRVKTNE--RGQMIC   80 (448)
Q Consensus         4 ~g~~t~ggT~an~~al~~a~~~~~~~~~~~G~~~~~~~~Vl~~~~~H~s~~~~~~-~~g~~~~~v~~v~~~~--~g~id~   80 (448)
                      ..++|+|+|+++..++.+++.              +++.|+++..+|.++...+. ..|.   +++.+|.++  ++.+|+
T Consensus       110 ~i~~~~G~~~ai~~~~~~~~~--------------~gd~Vl~~~p~y~~~~~~~~~~~g~---~~~~v~~~~~~~~~~d~  172 (428)
T 1iay_A          110 RVVMAGGATGANETIIFCLAD--------------PGDAFLVPSPYYPAFNRDLRWRTGV---QLIPIHCESSNNFKITS  172 (428)
T ss_dssp             SCEEEEHHHHHHHHHHHHHCC--------------TTCEEEEESSCCTTHHHHTTTTTCC---EEEEECCCTTTTTCCCH
T ss_pred             hEEEccChHHHHHHHHHHhCC--------------CCCeEEEccCCCcchHHHHHHhcCC---EEEEeecCCccCCcCCH
Confidence            478999999999888877643              56678889999998877543 5676   788888864  347899


Q ss_pred             HHHHHHHHHhhhcCCCcEEEEEeccCCccccccC---HHHHHHHHHHcCCEEEEeccccccccccc---chhhhhcC---
Q psy14299         81 SFLEQTIQTSLAEKKIPLFVNATAGTTVLGAFDP---LDEIATVCEKYDLWMHVDACWGGSLIFSE---KYSFVLKG---  151 (448)
Q Consensus        81 e~Le~~l~~~~~~~~~~~lVv~~~~~t~tG~~~~---l~~I~~ia~~~g~~l~VD~A~~~~~~~~~---~~~~~~~~---  151 (448)
                      ++|++++++....+.++++|++++++|++|.+.|   +++|.++|++||+++++|++|+.+.+...   ........   
T Consensus       173 ~~l~~~l~~~~~~~~~~~~v~l~~p~nptG~~~~~~~l~~l~~~~~~~~~~li~Dea~~~~~~~~~~~~~~~~~~~~~~~  252 (428)
T 1iay_A          173 KAVKEAYENAQKSNIKVKGLILTNPSNPLGTTLDKDTLKSVLSFTNQHNIHLVCDEIYAATVFDTPQFVSIAEILDEQEM  252 (428)
T ss_dssp             HHHHHHHHHHHHTTCCEEEEEEESSCTTTCCCCCHHHHHHHHHHHHTTTCEEEEECTTGGGCCSSSCCCCHHHHHTSGGG
T ss_pred             HHHHHHHHHHHhcCCceEEEEEcCCCCCCCCcCCHHHHHHHHHHHHHCCeEEEEeccccccccCCCCccCHHHhcccccc
Confidence            9999999764334456889999999999999999   99999999999999999999987543211   11111110   


Q ss_pred             --CCCcc--EEEECCccccCCCC-ceEEEEEeccchhhhhccCCcccccccCcccccccCCCCCcccCCCCchhHHHHHH
Q psy14299        152 --INRAN--SVSWNPHKMLGAPL-QCSILLIKEKGLLHQANATAATYLFQQDKFYDVSFDTGDKSVQCGRKVDAFKLWLM  226 (448)
Q Consensus       152 --~~~aD--~~~~s~hK~l~~P~-g~G~l~vr~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  226 (448)
                        + ..|  +++.++||+++.|. .+|++++.++.+....... ..+. .                     ...+...++
T Consensus       253 ~~~-~~d~viv~~s~sK~~g~~Glr~G~~~~~~~~~~~~~~~~-~~~~-~---------------------~~~~~~~a~  308 (428)
T 1iay_A          253 TYC-NKDLVHIVYSLSKDMGLPGFRVGIIYSFNDDVVNCARKM-SSFG-L---------------------VSTQTQYFL  308 (428)
T ss_dssp             TTS-CTTSEEEEEESTTTSSCGGGCEEEEEESCHHHHHHHHHH-HTTS-C---------------------CCHHHHHHH
T ss_pred             ccC-CCCcEEEEecchhhcCCCCceEEEEEeCCHHHHHHHHHH-Hhcc-c---------------------CCHHHHHHH
Confidence              0 146  78899999997543 3588877554443332110 0000 0                     000111111


Q ss_pred             HHHhChHHHHHHHHHhhhhccCCCccchhhhhhhhhhhhhhhhhhhhhhhccccccccccCCCCCccccccchhhHHHHH
Q psy14299        227 WKARGNLGFRHFVDNAVDCSRGSMTFSTLLCFDLQGLLHQANATAATYLFQQDKFYDVSFDTGDKSVQCGRKVDAFKLWL  306 (448)
Q Consensus       227 ~~~~g~~g~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  306 (448)
                      ...+....+                                                                       
T Consensus       309 ~~~l~~~~~-----------------------------------------------------------------------  317 (428)
T 1iay_A          309 AAMLSDEKF-----------------------------------------------------------------------  317 (428)
T ss_dssp             HHHTTCHHH-----------------------------------------------------------------------
T ss_pred             HHHhcChHH-----------------------------------------------------------------------
Confidence            111110000                                                                       


Q ss_pred             HHHHhcCccHHHHHHHHHHHHHHHHHHhhcCCCeEEeccCCceeeE-EEEeeccCCCccccchhhhhhhhhhhHHHHHHH
Q psy14299        307 MWKARGNLGFRHFVDNAVDCSRYFLSQISQRPGFRLVIPEFQCTNI-CFWFIPVSLRDKVEDETWWSTLSKVAPRIKEKL  385 (448)
Q Consensus       307 ~~~~~~~~G~~~~~~~~~~l~~~~~~~L~~~pg~~l~~~~~~~~~v-~f~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~L  385 (448)
                           ..+.++++.++..++++++.+.|+++ |++++  ++..+.+ .+.+ +.....    ..     .....++.+.|
T Consensus       318 -----~~~~~~~~~~~~~~~~~~l~~~L~~~-g~~~~--~~~~g~~~~~~~-~~~~~~----~~-----~~~~~~l~~~l  379 (428)
T 1iay_A          318 -----VDNFLRESAMRLGKRHKHFTNGLEVV-GIKCL--KNNAGLFCWMDL-RPLLRE----ST-----FDSEMSLWRVI  379 (428)
T ss_dssp             -----HHHHHHHHHHHHHHHHHHHHHHHHHT-TCCBC--CCSSSSEEEEEC-GGGCSS----SS-----HHHHHHHHHHH
T ss_pred             -----HHHHHHHHHHHHHHHHHHHHHHHHhc-CCccc--CCCeeEEEEEec-hhhcCC----Cc-----hhHHHHHHHHH
Confidence                 01234567778888899999999998 88765  3433443 3443 211100    00     00123688888


Q ss_pred             HhC-CcEEEEeeecCCcccccEEEEEecCCCCCCHHHHHHHHHHHHHHHHH
Q psy14299        386 VLG-GTLMIGYQPLQHRNLHNFFRLVTTCHPASSRQDMDYAIDQIELRGAE  435 (448)
Q Consensus       386 ~~~-g~~~~~~~~~~g~~~~~~lRis~~~~~~~t~edid~l~~al~~~~~~  435 (448)
                      .++ | +.+.+....+...++++|+++  + .++++|+++++++|+++.++
T Consensus       380 ~~~~g-i~v~~~~~~~~~~~~~iRis~--~-~~~~e~i~~~~~~l~~~l~~  426 (428)
T 1iay_A          380 INDVK-LNVSPGSSFECQEPGWFRVCF--A-NMDDGTVDIALARIRRFVGV  426 (428)
T ss_dssp             HHTSC-EECEEGGGGTCSSSSEEEEEC--S-SSCHHHHHHHHHHHHHHHHT
T ss_pred             HHhCC-EEEeCchhhCCCCCCEEEEEE--e-cCCHHHHHHHHHHHHHHHhc
Confidence            876 8 555544322211136999999  4 57999999999999988754

>2oga_A Transaminase; PLP-dependent enzyme, desosamine, deoxysugars, antibiotics, hydrolase; HET: PGU; 2.05A {Streptomyces venezuelae} PDB: 2oge_A*

Probab=99.86  E-value=2.4e-20  Score=188.99  Aligned_cols=150  Identities=11%  Similarity=0.067  Sum_probs=116.2

Q ss_pred             cEEEeCcHHHHHHHHHHHHHHhcCCcccccCCCCCCCeEEEecCCCchHHHHHHHHhCCCCCcEEEEecCC-CCCcCHHH
Q psy14299          4 KPFLLPGGSISNMYSICLARYRLDPDTKRKGLSHLPPLCMFTSEDSHYSMLKAAHWLGIGMDNVIRVKTNE-RGQMICSF   82 (448)
Q Consensus         4 ~g~~t~ggT~an~~al~~a~~~~~~~~~~~G~~~~~~~~Vl~~~~~H~s~~~~~~~~g~~~~~v~~v~~~~-~g~id~e~   82 (448)
                      ..+++++||+++..++.+++.             .+++.|+++..+|.++...++..|.   +++.++.++ ++.+|+++
T Consensus        80 ~~v~~~~Gt~a~~~~l~~~~~-------------~~gd~vl~~~~~~~~~~~~~~~~g~---~~~~~~~~~~~~~~d~~~  143 (399)
T 2oga_A           80 HAVGVNSGMDALQLALRGLGI-------------GPGDEVIVPSHTYIASWLAVSATGA---TPVPVEPHEDHPTLDPLL  143 (399)
T ss_dssp             EEEEESCHHHHHHHHHHHTTC-------------CTTCEEEEESSSCTHHHHHHHHTTC---EEEEECBCSSSSSBCHHH
T ss_pred             eEEEecCHHHHHHHHHHHhCC-------------CCcCEEEECCCccHHHHHHHHHCCC---EEEEEecCCCCCCcCHHH
Confidence            478999999999888776522             1567789999999999999999888   788999876 57899999


Q ss_pred             HHHHHHHhhhcCCCcEEEEEeccCCccccccCHHHHHHHHHHcCCEEEEecccccccccccchhhhhcCCCCccEEEECC
Q psy14299         83 LEQTIQTSLAEKKIPLFVNATAGTTVLGAFDPLDEIATVCEKYDLWMHVDACWGGSLIFSEKYSFVLKGINRANSVSWNP  162 (448)
Q Consensus        83 Le~~l~~~~~~~~~~~lVv~~~~~t~tG~~~~l~~I~~ia~~~g~~l~VD~A~~~~~~~~~~~~~~~~~~~~aD~~~~s~  162 (448)
                      |++++++      ++++|++   ++++|.+.|+++|.++|+++|+++++|++|+.+... +...  ..  ...|++++|+
T Consensus       144 l~~~i~~------~~~~v~~---~n~tG~~~~l~~i~~l~~~~~~~li~Dea~~~g~~~-~~~~--~~--~~~di~~~S~  209 (399)
T 2oga_A          144 VEKAITP------RTRALLP---VHLYGHPADMDALRELADRHGLHIVEDAAQAHGARY-RGRR--IG--AGSSVAAFSF  209 (399)
T ss_dssp             HHHHCCT------TEEEECC---BCGGGCCCCHHHHHHHHHHHTCEECEECTTCTTCEE-TTEE--TT--CTTCEEEEEC
T ss_pred             HHHhcCC------CCeEEEE---eCCcCCccCHHHHHHHHHHcCCEEEEECcccccCcc-CCee--cc--cccCEEEEeC
Confidence            9999854      4666663   578999999999999999999999999999877542 1111  11  1258999998


Q ss_pred             c--cccCCCCceEEEEEeccchh
Q psy14299        163 H--KMLGAPLQCSILLIKEKGLL  183 (448)
Q Consensus       163 h--K~l~~P~g~G~l~vr~~~~~  183 (448)
                      |  |+++.|...|+++.+++++.
T Consensus       210 ~~sK~~~~~G~~g~~~~~~~~~~  232 (399)
T 2oga_A          210 YPGKNLGCFGDGGAVVTGDPELA  232 (399)
T ss_dssp             CTTSSSCCSSCCEEEEESCHHHH
T ss_pred             CCCccCCcCCceEEEEeCCHHHH
Confidence            5  99987555666666545443

>1gd9_A Aspartate aminotransferase; pyridoxal enzyme, temperature dependence O substrate recognition; HET: PLP; 1.80A {Pyrococcus horikoshii} SCOP: c.67.1.1 PDB: 1gde_A* 1dju_A*

Probab=99.86  E-value=2.2e-20  Score=187.98  Aligned_cols=285  Identities=12%  Similarity=0.053  Sum_probs=190.2

Q ss_pred             EEEeCcHHHHHHHHHHHHHHhcCCcccccCCCCCCCeEEEecCCCchHHHHHHHHhCCCCCcEEEEecCC--CCCcCHHH
Q psy14299          5 PFLLPGGSISNMYSICLARYRLDPDTKRKGLSHLPPLCMFTSEDSHYSMLKAAHWLGIGMDNVIRVKTNE--RGQMICSF   82 (448)
Q Consensus         5 g~~t~ggT~an~~al~~a~~~~~~~~~~~G~~~~~~~~Vl~~~~~H~s~~~~~~~~g~~~~~v~~v~~~~--~g~id~e~   82 (448)
                      +++|+|||+++..++.++..              +++.|+++..+|+++...++..|.   +++.+|.++  ++.+|+++
T Consensus        90 v~~~~g~~~a~~~~~~~~~~--------------~gd~vl~~~~~~~~~~~~~~~~g~---~~~~v~~~~~~~~~~d~~~  152 (389)
T 1gd9_A           90 IMVLLGANQAFLMGLSAFLK--------------DGEEVLIPTPAFVSYAPAVILAGG---KPVEVPTYEEDEFRLNVDE  152 (389)
T ss_dssp             EEEESSTTHHHHHHHTTTCC--------------TTCEEEEEESCCTTHHHHHHHHTC---EEEEEECCGGGTTCCCHHH
T ss_pred             EEEcCChHHHHHHHHHHhCC--------------CCCEEEEcCCCchhHHHHHHHCCC---EEEEeccCCccCCCCCHHH
Confidence            89999999999888765422              567789999999999999999998   788999875  45789999


Q ss_pred             HHHHHHHhhhcCCCcEEEEEeccCCcccccc---CHHHHHHHHHHcCCEEEEecccccccccccch-h-hhhcCCCCccE
Q psy14299         83 LEQTIQTSLAEKKIPLFVNATAGTTVLGAFD---PLDEIATVCEKYDLWMHVDACWGGSLIFSEKY-S-FVLKGINRANS  157 (448)
Q Consensus        83 Le~~l~~~~~~~~~~~lVv~~~~~t~tG~~~---~l~~I~~ia~~~g~~l~VD~A~~~~~~~~~~~-~-~~~~~~~~aD~  157 (448)
                      |++++++      ++++|++++++|++|.+.   ++++|.++|++||+++++|++|+.+....... . ..+.+....|+
T Consensus       153 l~~~l~~------~~~~v~~~~~~nptG~~~~~~~l~~l~~~~~~~~~~li~De~~~~~~~~~~~~~~~~~~~~~~~~~i  226 (389)
T 1gd9_A          153 LKKYVTD------KTRALIINSPCNPTGAVLTKKDLEEIADFVVEHDLIVISDEVYEHFIYDDARHYSIASLDGMFERTI  226 (389)
T ss_dssp             HHHHCCT------TEEEEEEESSCTTTCCCCCHHHHHHHHHHHHHTTCEEEEECTTTTCBCTTCCCCCGGGSTTCGGGEE
T ss_pred             HHHhcCc------CceEEEEECCCCCCCcCCCHHHHHHHHHHHHHcCCEEEEehhhhhcccCCCCCCCHhhccCCCCCEE
Confidence            9999854      478889999999999887   49999999999999999999999876521100 0 01112234689


Q ss_pred             EEECCccccCCCC-ceEEEEEeccchhhhhccCCcccccccCcccccccCCCCCcccCCCCchhHHHHHHHHHhChHHHH
Q psy14299        158 VSWNPHKMLGAPL-QCSILLIKEKGLLHQANATAATYLFQQDKFYDVSFDTGDKSVQCGRKVDAFKLWLMWKARGNLGFR  236 (448)
Q Consensus       158 ~~~s~hK~l~~P~-g~G~l~vr~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~g~~  236 (448)
                      ++.++||+++.|. .+|++++++ .+..........+.               +    +  .......            
T Consensus       227 ~~~s~sK~~~~~G~r~G~~~~~~-~~~~~l~~~~~~~~---------------~----~--~~~~~~~------------  272 (389)
T 1gd9_A          227 TVNGFSKTFAMTGWRLGFVAAPS-WIIERMVKFQMYNA---------------T----C--PVTFIQY------------  272 (389)
T ss_dssp             EEEESTTTTTCGGGCCEEEECCH-HHHHHHHHHHTTTT---------------C----S--CCHHHHH------------
T ss_pred             EEecChhhcCCcccceEEEEECH-HHHHHHHHHHhhhc---------------c----C--CCHHHHH------------
Confidence            9999999986442 268887754 33332211000000               0    0  0000000            


Q ss_pred             HHHHHhhhhccCCCccchhhhhhhhhhhhhhhhhhhhhhhccccccccccCCCCCccccccchhhHHHHHHHHHh-cCcc
Q psy14299        237 HFVDNAVDCSRGSMTFSTLLCFDLQGLLHQANATAATYLFQQDKFYDVSFDTGDKSVQCGRKVDAFKLWLMWKAR-GNLG  315 (448)
Q Consensus       237 ~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~G  315 (448)
                                                                                        .+..+++.. ...+
T Consensus       273 ------------------------------------------------------------------a~~~~l~~~~~~~~  286 (389)
T 1gd9_A          273 ------------------------------------------------------------------AAAKALKDERSWKA  286 (389)
T ss_dssp             ------------------------------------------------------------------HHHHHHTCHHHHHH
T ss_pred             ------------------------------------------------------------------HHHHHHhCCCcchH
Confidence                                                                              111111110 0014


Q ss_pred             HHHHHHHHHHHHHHHHHHhhcCCCeEEeccCCceeeEEEEeecc-CCCccccchhhhhhhhhhhHHHHHHHH-hCCcEEE
Q psy14299        316 FRHFVDNAVDCSRYFLSQISQRPGFRLVIPEFQCTNICFWFIPV-SLRDKVEDETWWSTLSKVAPRIKEKLV-LGGTLMI  393 (448)
Q Consensus       316 ~~~~~~~~~~l~~~~~~~L~~~pg~~l~~~~~~~~~v~f~~~~~-~~~~~~~~~~~~~~~~~~~~~i~~~L~-~~g~~~~  393 (448)
                      ++++.++..++++++.+.|+++ |++++  .+..+.+.+...+. +.+               ..++.+.|. ++| +.+
T Consensus       287 ~~~~~~~~~~~~~~l~~~L~~~-g~~~~--~~~~~~~~~~~~~~~~~~---------------~~~~~~~l~~~~g-i~v  347 (389)
T 1gd9_A          287 VEEMRKEYDRRRKLVWKRLNEM-GLPTV--KPKGAFYIFPRIRDTGLT---------------SKKFSELMLKEAR-VAV  347 (389)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHT-TCCCC--CCCBTTEECCBCGGGTCC---------------HHHHHHHHHHHTC-EEC
T ss_pred             HHHHHHHHHHHHHHHHHHHHHc-CCeec--CCCeeeEEEEeccCCCCC---------------HHHHHHHHHHhCC-EEE
Confidence            6677888889999999999998 88775  34444433311121 111               236888888 788 555


Q ss_pred             EeeecCCcccccEEEEEecCCCCCCHHHHHHHHHHHHHHHHH
Q psy14299        394 GYQPLQHRNLHNFFRLVTTCHPASSRQDMDYAIDQIELRGAE  435 (448)
Q Consensus       394 ~~~~~~g~~~~~~lRis~~~~~~~t~edid~l~~al~~~~~~  435 (448)
                      .++...+...++++|+++.    +++++++++++.|+++.++
T Consensus       348 ~~g~~~~~~~~~~iRi~~~----~~~~~i~~~l~~l~~~~~~  385 (389)
T 1gd9_A          348 VPGSAFGKAGEGYVRISYA----TAYEKLEEAMDRMERVLKE  385 (389)
T ss_dssp             EEGGGGCGGGTTBEEEECC----SCHHHHHHHHHHHHHHHHH
T ss_pred             eCchhhCCCCCCeEEEEec----CCHHHHHHHHHHHHHHHHh
Confidence            5443322222478999994    2899999999999988764

>1d2f_A MALY protein; aminotransferase fold, large PLP-binding domain, small C-TER domain, open alpha-beta structure., transferase; HET: PLP; 2.50A {Escherichia coli} SCOP: c.67.1.3

Probab=99.86  E-value=6.8e-20  Score=184.65  Aligned_cols=287  Identities=10%  Similarity=-0.008  Sum_probs=188.9

Q ss_pred             cEEEeCcHHHHHHHHHHHHHHhcCCcccccCCCCCCCeEEEecCCCchHHHHHHHHhCCCCCcEEEEecCCCC---CcCH
Q psy14299          4 KPFLLPGGSISNMYSICLARYRLDPDTKRKGLSHLPPLCMFTSEDSHYSMLKAAHWLGIGMDNVIRVKTNERG---QMIC   80 (448)
Q Consensus         4 ~g~~t~ggT~an~~al~~a~~~~~~~~~~~G~~~~~~~~Vl~~~~~H~s~~~~~~~~g~~~~~v~~v~~~~~g---~id~   80 (448)
                      ..++|+|||+++..++.+...              +++.|+++...|.++...++..|.   +++.+|.++++   .+|+
T Consensus        89 ~v~~t~g~~~al~~~~~~l~~--------------~gd~vl~~~p~y~~~~~~~~~~g~---~~~~v~~~~~~~~~~~d~  151 (390)
T 1d2f_A           89 TVVYGPSVIYMVSELIRQWSE--------------TGEGVVIHTPAYDAFYKAIEGNQR---TVMPVALEKQADGWFCDM  151 (390)
T ss_dssp             GEEEESCHHHHHHHHHHHSSC--------------TTCEEEEEESCCHHHHHHHHHTTC---EEEEEECEECSSSEECCH
T ss_pred             HEEEcCCHHHHHHHHHHHhcC--------------CCCEEEEcCCCcHHHHHHHHHCCC---EEEEeecccCCCccccCH
Confidence            479999999999888776533              566788899999999999998888   78888876442   5899


Q ss_pred             HHHHHHHHHhhhcCCCcEEEEEeccCCccccccC---HHHHHHHHHHcCCEEEEecccccccccccchhhhhcCCC-C-c
Q psy14299         81 SFLEQTIQTSLAEKKIPLFVNATAGTTVLGAFDP---LDEIATVCEKYDLWMHVDACWGGSLIFSEKYSFVLKGIN-R-A  155 (448)
Q Consensus        81 e~Le~~l~~~~~~~~~~~lVv~~~~~t~tG~~~~---l~~I~~ia~~~g~~l~VD~A~~~~~~~~~~~~~~~~~~~-~-a  155 (448)
                      ++|++++++     .++++|++++++|++|.+.|   +++|.++|++||+++++|++|+.+........ .+..+. . .
T Consensus       152 ~~l~~~l~~-----~~~~~v~l~~p~nptG~~~~~~~l~~l~~~~~~~~~~li~De~~~~~~~~g~~~~-~~~~~~~~~~  225 (390)
T 1d2f_A          152 GKLEAVLAK-----PECKIMLLCSPQNPTGKVWTCDELEIMADLCERHGVRVISDEIHMDMVWGEQPHI-PWSNVARGDW  225 (390)
T ss_dssp             HHHHHHHTS-----TTEEEEEEESSCTTTCCCCCTTHHHHHHHHHHHTTCEEEEECTTTTCBCSSSCCC-CGGGTCCSSE
T ss_pred             HHHHHHhcc-----CCCeEEEEeCCCCCCCcCcCHHHHHHHHHHHHHcCCEEEEEccccccccCCCCCc-CHHHcchhhH
Confidence            999999864     25788888999999999877   89999999999999999999987543211110 011121 1 2


Q ss_pred             cEEEECCccccCCCC-ceEEEEEeccchhhhhccCCc-ccccccCcccccccCCCCCcccCCCCchhHHHHHHHHHhChH
Q psy14299        156 NSVSWNPHKMLGAPL-QCSILLIKEKGLLHQANATAA-TYLFQQDKFYDVSFDTGDKSVQCGRKVDAFKLWLMWKARGNL  233 (448)
Q Consensus       156 D~~~~s~hK~l~~P~-g~G~l~vr~~~~~~~~~~~~~-~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~  233 (448)
                      |. +.+++|+++.|. .+|+++++++.+......... .+-.            .      +  ...+            
T Consensus       226 d~-~~s~sK~~~~~G~r~G~~~~~~~~~~~~~~~~~~~~~~~------------~------~--~~~~------------  272 (390)
T 1d2f_A          226 AL-LTSGSKSFNIPALTGAYGIIENSSSRDAYLSALKGRDGL------------S------S--PSVL------------  272 (390)
T ss_dssp             EE-EECSHHHHTCGGGCCEEEEECSHHHHHHHHHHHHTTSCC------------C------S--CCHH------------
T ss_pred             hh-ccCccHhhcccChhheEEEECCHHHHHHHHHHHhhhccc------------C------C--CCHH------------
Confidence            66 899999997442 368888865444332211000 0000            0      0  0000            


Q ss_pred             HHHHHHHHhhhhccCCCccchhhhhhhhhhhhhhhhhhhhhhhccccccccccCCCCCccccccchhhHHHHHHHHHhcC
Q psy14299        234 GFRHFVDNAVDCSRGSMTFSTLLCFDLQGLLHQANATAATYLFQQDKFYDVSFDTGDKSVQCGRKVDAFKLWLMWKARGN  313 (448)
Q Consensus       234 g~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  313 (448)
                                                                                        .+..+..+++. ..
T Consensus       273 ------------------------------------------------------------------~~~a~~~~l~~-~~  285 (390)
T 1d2f_A          273 ------------------------------------------------------------------ALTAHIAAYQQ-GA  285 (390)
T ss_dssp             ------------------------------------------------------------------HHHHHHHHHHH-CH
T ss_pred             ------------------------------------------------------------------HHHHHHHHHhc-CH
Confidence                                                                              01111112221 12


Q ss_pred             ccHHHHHHHHHHHHHHHHHHhhc-CCCeEEeccCCceeeEE-EEeeccCCCccccchhhhhhhhhhhHHHHHHHH-hCCc
Q psy14299        314 LGFRHFVDNAVDCSRYFLSQISQ-RPGFRLVIPEFQCTNIC-FWFIPVSLRDKVEDETWWSTLSKVAPRIKEKLV-LGGT  390 (448)
Q Consensus       314 ~G~~~~~~~~~~l~~~~~~~L~~-~pg~~l~~~~~~~~~v~-f~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~L~-~~g~  390 (448)
                      +.++++.++..++++++.+.|++ +|+++++  ++..+.+. +.+...+.+               ..++.+.|. ++| 
T Consensus       286 ~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~--~~~~~~~~~~~~~~~~~~---------------~~~l~~~l~~~~g-  347 (390)
T 1d2f_A          286 PWLDALRIYLKDNLTYIADKMNAAFPELNWQ--IPQSTYLAWLDLRPLNID---------------DNALQKALIEQEK-  347 (390)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHCSSCCCC--CCSBCSEEEEECGGGCCC---------------HHHHHHHHHHTTC-
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhhCCCCEEe--cCCccEEEEEEccccCCC---------------HHHHHHHHHHHcC-
Confidence            34566778888899999999998 8898764  34555554 333111111               236888888 578 


Q ss_pred             EEEEeeecCCcccccEEEEEecCCCCCCHHHHHHHHHHHHHHHHH
Q psy14299        391 LMIGYQPLQHRNLHNFFRLVTTCHPASSRQDMDYAIDQIELRGAE  435 (448)
Q Consensus       391 ~~~~~~~~~g~~~~~~lRis~~~~~~~t~edid~l~~al~~~~~~  435 (448)
                      +.+.++...+...++++|++++  .  ++++++++++.|+++.++
T Consensus       348 i~v~~g~~f~~~~~~~~Ris~~--~--~~~~l~~~l~~l~~~l~~  388 (390)
T 1d2f_A          348 VAIMPGYTYGEEGRGFVRLNAG--C--PRSKLEKGVAGLINAIRA  388 (390)
T ss_dssp             EECEEGGGGCGGGTTEEEEECC--S--CHHHHHHHHHHHHHHHHH
T ss_pred             EEeeCccccCCCCCCeEEEEec--C--CHHHHHHHHHHHHHHHHh
Confidence            5555543322112479999995  2  578999999999888765

>2c81_A Glutamine-2-deoxy-scyllo-inosose aminotransferase; SMAT, butirosin, aminoglycoside antibiotics; HET: PMP; 1.7A {Bacillus circulans} PDB: 2c7t_A*

Probab=99.86  E-value=3.6e-20  Score=188.76  Aligned_cols=150  Identities=13%  Similarity=0.106  Sum_probs=115.2

Q ss_pred             cEEEeCcHHHHHHHHHHHHHHhcCCcccccCCCCCCCeEEEecCCCchHHHHHHHHhCCCCCcEEEEecCC-CCCcCHHH
Q psy14299          4 KPFLLPGGSISNMYSICLARYRLDPDTKRKGLSHLPPLCMFTSEDSHYSMLKAAHWLGIGMDNVIRVKTNE-RGQMICSF   82 (448)
Q Consensus         4 ~g~~t~ggT~an~~al~~a~~~~~~~~~~~G~~~~~~~~Vl~~~~~H~s~~~~~~~~g~~~~~v~~v~~~~-~g~id~e~   82 (448)
                      ..+++++||+++..++.++..             .+++.|+++..+|.++..+++..|.   +++.++.++ ++.+|+++
T Consensus        59 ~~i~~~~gt~al~~~~~~~~~-------------~~gd~Vl~~~~~~~~~~~~~~~~g~---~~~~~~~~~~~~~~d~~~  122 (418)
T 2c81_A           59 YCVPTTSGSTALMLALEALGI-------------GEGDEVIVPSLTWIATATAVLNVNA---LPVFVDVEADTYCIDPQL  122 (418)
T ss_dssp             EEEEESCHHHHHHHHHHHTTC-------------CTTCEEEEESSSCTHHHHHHHHTTC---EEEEECBCTTTCSBCHHH
T ss_pred             cEEEeCCHHHHHHHHHHHcCC-------------CCcCEEEECCCccHhHHHHHHHcCC---EEEEEecCCCCCCcCHHH
Confidence            468999999999888876522             1567899999999999999999898   788999886 78999999


Q ss_pred             HHHHHHHhhhcCCCcEEEEEeccCCccccccCHHHHHHHHHHcCCEEEEecccccccccccchhhhhcCCCCccEEEECC
Q psy14299         83 LEQTIQTSLAEKKIPLFVNATAGTTVLGAFDPLDEIATVCEKYDLWMHVDACWGGSLIFSEKYSFVLKGINRANSVSWNP  162 (448)
Q Consensus        83 Le~~l~~~~~~~~~~~lVv~~~~~t~tG~~~~l~~I~~ia~~~g~~l~VD~A~~~~~~~~~~~~~~~~~~~~aD~~~~s~  162 (448)
                      |++++++      ++++|+++   +++|...|+++|.++|++||+++|+|++|+.+...... .  ...+..+++.++++
T Consensus       123 l~~~i~~------~~~~v~~~---~~~G~~~~~~~i~~~~~~~~~~li~D~a~~~~~~~~~~-~--~~~~~~~~~~s~s~  190 (418)
T 2c81_A          123 IKSAITD------KTKAIIPV---HLFGSMANMDEINEIAQEHNLFVIEDCAQSHGSVWNNQ-R--AGTIGDIGAFSCQQ  190 (418)
T ss_dssp             HGGGCCT------TEEEECCB---CCTTCCCCHHHHHHHHHHTTCEEEEECTTCTTCEETTE-E--TTSSSSEEEEECCT
T ss_pred             HHHhhCC------CCeEEEEe---CCcCCcccHHHHHHHHHHCCCEEEEECcccccCccCCE-e--cccccceEEEeccC
Confidence            9998854      46777764   47899999999999999999999999999988632111 1  11122255666667


Q ss_pred             ccccCCCCceEEEEEeccch
Q psy14299        163 HKMLGAPLQCSILLIKEKGL  182 (448)
Q Consensus       163 hK~l~~P~g~G~l~vr~~~~  182 (448)
                      ||++++ ...|+++.+++++
T Consensus       191 ~K~~~~-g~~g~~~~~~~~l  209 (418)
T 2c81_A          191 GKVLTA-GEGGIIVTKNPRL  209 (418)
T ss_dssp             TSSSCS-SSCEEEEESCHHH
T ss_pred             CcccCC-CCeEEEEECCHHH
Confidence            999987 4666666644443

>2dkj_A Serine hydroxymethyltransferase; PLP dependent enzyme, structural genomics; HET: PLP; 1.15A {Thermus thermophilus}

Probab=99.86  E-value=8e-21  Score=192.07  Aligned_cols=284  Identities=14%  Similarity=0.109  Sum_probs=187.9

Q ss_pred             EEeCcHHHHHHHHHHHHHHhcCCcccccCCCCCCCeEEEecCCCchHH---HHHHHHhCCCCCcEEEEec--C-CCCCcC
Q psy14299          6 FLLPGGSISNMYSICLARYRLDPDTKRKGLSHLPPLCMFTSEDSHYSM---LKAAHWLGIGMDNVIRVKT--N-ERGQMI   79 (448)
Q Consensus         6 ~~t~ggT~an~~al~~a~~~~~~~~~~~G~~~~~~~~Vl~~~~~H~s~---~~~~~~~g~~~~~v~~v~~--~-~~g~id   79 (448)
                      +++++||+++..++.++..              +++.|+++..+|.++   ...++..|.   .+..++.  + .++.+|
T Consensus        89 i~~~sGt~a~~~~~~~~~~--------------~gd~Vl~~~~~~~~~~~~~~~~~~~g~---~~~~~~~~~~~~~~~~d  151 (407)
T 2dkj_A           89 VQPHSGSQANMAVYMALME--------------PGDTLMGMDLAAGGHLTHGSRVNFSGK---LYKVVSYGVRPDTELID  151 (407)
T ss_dssp             CCCSSHHHHHHHHHHHHCC--------------TTCEEEEECGGGTCCGGGTCTTSHHHH---HSEEEEECCCTTTSSCC
T ss_pred             EEecchHHHHHHHHHHhcC--------------CCCEEEEecccccCccchHHHHHhcCc---eEEEEecCCCcccCccC
Confidence            5667788898888877632              566788899999877   344445554   2334443  4 367899


Q ss_pred             HHHHHHHHHHhhhcCCCcEEEEEeccCCccccccCHHHHHHHHHHcCCEEEEecccccccccccchhhhhcCCCCccEEE
Q psy14299         80 CSFLEQTIQTSLAEKKIPLFVNATAGTTVLGAFDPLDEIATVCEKYDLWMHVDACWGGSLIFSEKYSFVLKGINRANSVS  159 (448)
Q Consensus        80 ~e~Le~~l~~~~~~~~~~~lVv~~~~~t~tG~~~~l~~I~~ia~~~g~~l~VD~A~~~~~~~~~~~~~~~~~~~~aD~~~  159 (448)
                      +++|++++++.     ++++|+++.+.+  |...|+++|.++|++||+++++|++|+.|....+....   .+...|+++
T Consensus       152 ~~~l~~~l~~~-----~~~~v~~~~p~~--~~~~~l~~i~~l~~~~~~~li~Dea~~~g~~~~~~~~~---~~~~~di~~  221 (407)
T 2dkj_A          152 LEEVRRLALEH-----RPKVIVAGASAY--PRFWDFKAFREIADEVGAYLVVDMAHFAGLVAAGLHPN---PLPYAHVVT  221 (407)
T ss_dssp             HHHHHHHHHHH-----CCSEEEECCSSC--CSCCCHHHHHHHHHHHTCEEEEECTTTHHHHHTTCSCC---CTTTCSEEE
T ss_pred             HHHHHHHHhhc-----CCeEEEEecccc--CCCCCHHHHHHHHHHcCCEEEEEccccccccccCccCC---ccccccEEE
Confidence            99999999752     367777755555  48889999999999999999999999986653332111   112379999


Q ss_pred             ECCccccCCCCceEEEEEeccchhhhhccCCcccccccCcccccccCCCCCcccCCCCchhHHHHHHHHHhChHHHHHHH
Q psy14299        160 WNPHKMLGAPLQCSILLIKEKGLLHQANATAATYLFQQDKFYDVSFDTGDKSVQCGRKVDAFKLWLMWKARGNLGFRHFV  239 (448)
Q Consensus       160 ~s~hK~l~~P~g~G~l~vr~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~g~~~~i  239 (448)
                      .++||++++|.+ |+++++++++..........+..                  .+..                      
T Consensus       222 ~s~sK~l~g~~~-G~~~~~~~~~~~~l~~~~~~~~~------------------~~~~----------------------  260 (407)
T 2dkj_A          222 STTHKTLRGPRG-GLILSNDPELGKRIDKLIFPGIQ------------------GGPL----------------------  260 (407)
T ss_dssp             EESSGGGCCCSC-EEEEESCHHHHHHHHHHHTTTTC------------------SSCC----------------------
T ss_pred             EeccccCCCCCc-eEEEECCHHHHHHHHhhhccccc------------------CCCc----------------------
Confidence            999999998886 88888644443332110000000                  0000                      


Q ss_pred             HHhhhhccCCCccchhhhhhhhhhhhhhhhhhhhhhhccccccccccCCCCCccccccchhhHHHHHHHHHhcCccHHHH
Q psy14299        240 DNAVDCSRGSMTFSTLLCFDLQGLLHQANATAATYLFQQDKFYDVSFDTGDKSVQCGRKVDAFKLWLMWKARGNLGFRHF  319 (448)
Q Consensus       240 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~  319 (448)
                                                                                .....++..+++....++++++
T Consensus       261 ----------------------------------------------------------~~~~~a~~~al~~~~~~~~~~~  282 (407)
T 2dkj_A          261 ----------------------------------------------------------EHVIAGKAVAFFEALQPEFKEY  282 (407)
T ss_dssp             ----------------------------------------------------------HHHHHHHHHHHHHHHSHHHHHH
T ss_pred             ----------------------------------------------------------HHHHHHHHHHHHHHHHhhHHHH
Confidence                                                                      0001122334455445678889


Q ss_pred             HHHHHHHHHHHHHHhhcCCCeEEeccC-CceeeEEEEeeccCCCccccchhhhhhhhhhhHHHHHHHHhCCcEEEEeeec
Q psy14299        320 VDNAVDCSRYFLSQISQRPGFRLVIPE-FQCTNICFWFIPVSLRDKVEDETWWSTLSKVAPRIKEKLVLGGTLMIGYQPL  398 (448)
Q Consensus       320 ~~~~~~l~~~~~~~L~~~pg~~l~~~~-~~~~~v~f~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~L~~~g~~~~~~~~~  398 (448)
                      .++..++++++.+.|+++ |++++ .+ ...+.+.+.+...+..               ..++.+.|.++| +.+.+...
T Consensus       283 ~~~~~~~~~~l~~~L~~~-g~~~~-~~~~~~~~~~~~~~~~~~~---------------~~~~~~~l~~~g-i~v~~~~~  344 (407)
T 2dkj_A          283 SRLVVENAKRLAEELARR-GYRIV-TGGTDNHLFLVDLRPKGLT---------------GKEAEERLDAVG-ITVNKNAI  344 (407)
T ss_dssp             HHHHHHHHHHHHHHHHHT-TCEEG-GGSCSSSEEEEECGGGTCC---------------HHHHHHHHHHTT-EECEECCC
T ss_pred             HHHHHHHHHHHHHHHHhC-Cceee-cCCCCceEEEEECcccCCC---------------HHHHHHHHHHcC-ceecCCcC
Confidence            999999999999999998 99986 43 3455555554221111               236788888888 44444321


Q ss_pred             C----CcccccEEEEEecCCCC----CCHHHHHHHHHHHHHHHHH
Q psy14299        399 Q----HRNLHNFFRLVTTCHPA----SSRQDMDYAIDQIELRGAE  435 (448)
Q Consensus       399 ~----g~~~~~~lRis~~~~~~----~t~edid~l~~al~~~~~~  435 (448)
                      .    +...++++|+++.  .+    ++++|+++++++|+++.++
T Consensus       345 ~~~~~~~~~~~~iRis~~--~~~~~~~~~~~i~~~~~~l~~~~~~  387 (407)
T 2dkj_A          345 PFDPKPPRVTSGIRIGTP--AITTRGFTPEEMPLVAELIDRALLE  387 (407)
T ss_dssp             TTCSSCTTTCSEEEEECH--HHHHTTCCGGGHHHHHHHHHHHHHH
T ss_pred             ccccccccCCCceeeecc--cccccCCCHHHHHHHHHHHHHHHhc
Confidence            1    1112368999993  33    7999999999999998876

>3ftb_A Histidinol-phosphate aminotransferase; structural genomics, PSI, MCSG, protein structure initiative; 2.00A {Clostridium acetobutylicum} SCOP: c.67.1.0

Probab=99.86  E-value=4.8e-20  Score=183.34  Aligned_cols=275  Identities=10%  Similarity=-0.016  Sum_probs=187.9

Q ss_pred             cEEEeCcHHHHHHHHHHHHHHhcCCcccccCCCCCCCeEEEecCCCchHHHHHHHHhCCCCCcEEEEecCCCCCcCHHHH
Q psy14299          4 KPFLLPGGSISNMYSICLARYRLDPDTKRKGLSHLPPLCMFTSEDSHYSMLKAAHWLGIGMDNVIRVKTNERGQMICSFL   83 (448)
Q Consensus         4 ~g~~t~ggT~an~~al~~a~~~~~~~~~~~G~~~~~~~~Vl~~~~~H~s~~~~~~~~g~~~~~v~~v~~~~~g~id~e~L   83 (448)
                      ..++|+|||+++..++..+                  +.|+++..+|.++...++..|.   +++.+|.++++.+++++|
T Consensus        80 ~i~~~~g~t~al~~~~~~~------------------d~vi~~~~~~~~~~~~~~~~g~---~~~~~~~~~~~~~~~~~l  138 (361)
T 3ftb_A           80 GIVLGNGASEIIELSISLF------------------EKILIIVPSYAEYEINAKKHGV---SVVFSYLDENMCIDYEDI  138 (361)
T ss_dssp             EEEEESSHHHHHHHHHTTC------------------SEEEEEESCCTHHHHHHHHTTC---EEEEEECCTTSCCCHHHH
T ss_pred             eEEEcCCHHHHHHHHHHHc------------------CcEEEecCChHHHHHHHHHcCC---eEEEeecCcccCCCHHHH
Confidence            5789999999988887543                  2478888999999999999998   899999988888999999


Q ss_pred             HHHHHHhhhcCCCcEEEEEeccCCccccccC---HHHHHHHHHHcCCEEEEecccccccccccchh-hhhcCCCCccEEE
Q psy14299         84 EQTIQTSLAEKKIPLFVNATAGTTVLGAFDP---LDEIATVCEKYDLWMHVDACWGGSLIFSEKYS-FVLKGINRANSVS  159 (448)
Q Consensus        84 e~~l~~~~~~~~~~~lVv~~~~~t~tG~~~~---l~~I~~ia~~~g~~l~VD~A~~~~~~~~~~~~-~~~~~~~~aD~~~  159 (448)
                      ++++++       +++|++++++|++|.+.|   +++|+++|++||+++++|++|+..... .... ....+.....+++
T Consensus       139 ~~~l~~-------~~~v~i~~p~nptG~~~~~~~l~~i~~~~~~~~~~li~De~~~~~~~~-~~~~~~~~~~~~~~~i~~  210 (361)
T 3ftb_A          139 ISKIDD-------VDSVIIGNPNNPNGGLINKEKFIHVLKLAEEKKKTIIIDEAFIEFTGD-PSSSFVGEIKNYSCLFII  210 (361)
T ss_dssp             HHHTTT-------CSEEEEETTBTTTTBCCCHHHHHHHHHHHHHHTCEEEEECSSGGGTCC-TTSSSGGGTTTCSSEEEE
T ss_pred             HHhccC-------CCEEEEeCCCCCCCCCCCHHHHHHHHHHhhhcCCEEEEECcchhhcCC-cccchhHhcccCCCEEEE
Confidence            988853       678999999999999876   667888888999999999999865542 1100 0011111234667


Q ss_pred             ECCccccCCC-CceEEEEEeccchhhhhccCCcccccccCcccccccCCCCCcccCCCCchhHHHHHHHHHhChHHHHHH
Q psy14299        160 WNPHKMLGAP-LQCSILLIKEKGLLHQANATAATYLFQQDKFYDVSFDTGDKSVQCGRKVDAFKLWLMWKARGNLGFRHF  238 (448)
Q Consensus       160 ~s~hK~l~~P-~g~G~l~vr~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~g~~~~  238 (448)
                      .+++|+++.| ...|++++.++++..........+                       ....+...+.            
T Consensus       211 ~s~sK~~~~~G~r~g~~~~~~~~~~~~~~~~~~~~-----------------------~~~~~~~~~~------------  255 (361)
T 3ftb_A          211 RAMTKFFAMPGIRFGYGITNNKEIAAKIKAKQNPW-----------------------NINCFAEMAA------------  255 (361)
T ss_dssp             EESSSTTSCGGGCCEEEEESCHHHHHHHHTTSCTT-----------------------CSCHHHHHHH------------
T ss_pred             eeChhhcCCCCcceeEEEeCCHHHHHHHHhhCCCC-----------------------CCCHHHHHHH------------
Confidence            8999998744 456777655655444332111100                       0000111111            


Q ss_pred             HHHhhhhccCCCccchhhhhhhhhhhhhhhhhhhhhhhccccccccccCCCCCccccccchhhHHHHHHHHHhcCccHHH
Q psy14299        239 VDNAVDCSRGSMTFSTLLCFDLQGLLHQANATAATYLFQQDKFYDVSFDTGDKSVQCGRKVDAFKLWLMWKARGNLGFRH  318 (448)
Q Consensus       239 i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~  318 (448)
                                                                                        ..+++  ..+++++
T Consensus       256 ------------------------------------------------------------------~~~l~--~~~~~~~  267 (361)
T 3ftb_A          256 ------------------------------------------------------------------INCLK--DTNYIEE  267 (361)
T ss_dssp             ------------------------------------------------------------------HHTSS--CHHHHHH
T ss_pred             ------------------------------------------------------------------HHHhc--CHHHHHH
Confidence                                                                              11111  1245667


Q ss_pred             HHHHHHHHHHHHHHHhhcCCCeE-EeccCCceeeEEEEeeccCCCccccchhhhhhhhhhhHHHHHHHHhCCcEEEEeee
Q psy14299        319 FVDNAVDCSRYFLSQISQRPGFR-LVIPEFQCTNICFWFIPVSLRDKVEDETWWSTLSKVAPRIKEKLVLGGTLMIGYQP  397 (448)
Q Consensus       319 ~~~~~~~l~~~~~~~L~~~pg~~-l~~~~~~~~~v~f~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~L~~~g~~~~~~~~  397 (448)
                      +.++..++++++.+.|+++|+++ +.  ++..+.+.+.+..  .+               ..++.+.|.++| +.+.++.
T Consensus       268 ~~~~~~~~~~~l~~~l~~~~~~~~~~--~~~~~~~~~~~~~--~~---------------~~~l~~~l~~~g-i~v~~g~  327 (361)
T 3ftb_A          268 SLLWIKKERKRFIEELNKIGFIKRVF--SPHANFVLCRLEN--IS---------------GEKLYDSLLKED-IVIRRCC  327 (361)
T ss_dssp             HHHHHHHHHHHHHHHHHHSSSEEEEE--CCSSSEEEEEESS--SC---------------HHHHHHHHHTTT-EECEECT
T ss_pred             HHHHHHHHHHHHHHHHHhCCCCceec--CCCCeEEEEEcCC--CC---------------HHHHHHHHHHCC-eEEeeCc
Confidence            78888899999999999999998 65  4455555554321  11               237889999998 5555543


Q ss_pred             cCCcccccEEEEEecCCCCCCHHHHHHHHHHHHHHHHH
Q psy14299        398 LQHRNLHNFFRLVTTCHPASSRQDMDYAIDQIELRGAE  435 (448)
Q Consensus       398 ~~g~~~~~~lRis~~~~~~~t~edid~l~~al~~~~~~  435 (448)
                      ..+...++++|++++     +++|+++++++|+++.+.
T Consensus       328 ~~~~~~~~~iRis~~-----~~~~~~~l~~~l~~~~~~  360 (361)
T 3ftb_A          328 NFIGLDDSFVRFAIK-----DEKKNTKFLRALKGVENN  360 (361)
T ss_dssp             TSTTCCTTEEEEECC-----CHHHHHHHHHHHHHHHHT
T ss_pred             cCCCCCCCEEEEEcC-----CHHHHHHHHHHHHHHHhc
Confidence            332222479999993     889999999999988753

>2vi8_A Serine hydroxymethyltransferase; SHMT, E53Q, FTHF, enzyme memory, pyridoxal phosphate, one-carbon metabolism, PLP-dependent enzymes; HET: PLP; 1.67A {Bacillus stearothermophilus} PDB: 2vi9_A* 2via_A* 2vib_A* 1kkj_A* 1kkp_A* 1kl1_A* 1kl2_A* 1yjs_A* 2w7f_A* 2w7d_A* 2w7e_A* 2w7g_A* 2w7h_A* 1yjz_A* 1yjy_A* 2vgu_A* 2vgs_A* 2vgt_A* 2vgv_A* 2vgw_A* ...

Probab=99.86  E-value=2.2e-20  Score=188.65  Aligned_cols=287  Identities=15%  Similarity=0.141  Sum_probs=186.3

Q ss_pred             EEeCcHHHHHHHHHHHHHHhcCCcccccCCCCCCCeEEEecCCCchHHHH-HH--HHhCCCCCcEEEEecC-CCCCcCHH
Q psy14299          6 FLLPGGSISNMYSICLARYRLDPDTKRKGLSHLPPLCMFTSEDSHYSMLK-AA--HWLGIGMDNVIRVKTN-ERGQMICS   81 (448)
Q Consensus         6 ~~t~ggT~an~~al~~a~~~~~~~~~~~G~~~~~~~~Vl~~~~~H~s~~~-~~--~~~g~~~~~v~~v~~~-~~g~id~e   81 (448)
                      +++++||+++..++.++..              +++.|+++..+|.++.. .+  ...|.+. ++..++.+ +++.+|++
T Consensus        89 i~~~sGt~a~~~a~~~~~~--------------~gd~Vl~~~~~~~~~~~~~~~~~~~g~~~-~~~~~~~~~~~~~~d~~  153 (405)
T 2vi8_A           89 VQPHSGAQANMAVYFTVLE--------------HGDTVLGMNLSHGGHLTHGSPVNFSGVQY-NFVAYGVDPETHVIDYD  153 (405)
T ss_dssp             CCCSSHHHHHHHHHHHHCC--------------TTCEEEEECGGGTCCTTTTCTTSHHHHHS-EEEEECBCTTTCSBCHH
T ss_pred             EEecCcHHHHHHHHHHhcC--------------CCCEEEEecccccchhcccchhhhcccee-EEEecccccccCCcCHH
Confidence            4556779999998877633              56678888889987643 11  2223211 46666665 56789999


Q ss_pred             HHHHHHHHhhhcCCCcEEEEEeccCCccccccCHHHHHHHHHHcCCEEEEecccccccccccchhhhhcCCCCccEEEEC
Q psy14299         82 FLEQTIQTSLAEKKIPLFVNATAGTTVLGAFDPLDEIATVCEKYDLWMHVDACWGGSLIFSEKYSFVLKGINRANSVSWN  161 (448)
Q Consensus        82 ~Le~~l~~~~~~~~~~~lVv~~~~~t~tG~~~~l~~I~~ia~~~g~~l~VD~A~~~~~~~~~~~~~~~~~~~~aD~~~~s  161 (448)
                      +|++++++.     ++++|+++ + +..|...|+++|.++|++||+++|+|++|+.+....+...   ..+...|+++.+
T Consensus       154 ~l~~~i~~~-----~~~~v~~~-~-~~~~~~~~l~~i~~l~~~~~~~li~Dea~~~g~~~~~~~~---~~~~~~di~~~s  223 (405)
T 2vi8_A          154 DVREKARLH-----RPKLIVAA-A-AAYPRIIDFAKFREIADEVGAYLMVDMAHIAGLVAAGLHP---NPVPYAHFVTTT  223 (405)
T ss_dssp             HHHHHHHHH-----CCSEEEEC-C-SSCCSCCCHHHHHHHHHHHTCEEEEECTTTHHHHHTTSSC---CSTTTCSEEEEE
T ss_pred             HHHHHHHhc-----CCeEEEEe-C-CCCCccCCHHHHHHHHHHcCCEEEEEccccccccccCcCC---CccccCCEEEEe
Confidence            999999752     35676663 2 3357788999999999999999999999996554322211   112347999999


Q ss_pred             CccccCCCCceEEEEEeccchhhhhccCCcccccccCcccccccCCCCCcccCCCCchhHHHHHHHHHhChHHHHHHHHH
Q psy14299        162 PHKMLGAPLQCSILLIKEKGLLHQANATAATYLFQQDKFYDVSFDTGDKSVQCGRKVDAFKLWLMWKARGNLGFRHFVDN  241 (448)
Q Consensus       162 ~hK~l~~P~g~G~l~vr~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~g~~~~i~~  241 (448)
                      +||++++|.| |++++++ ++..........+..                  .+..                        
T Consensus       224 ~sK~~~g~~g-G~~~~~~-~~~~~l~~~~~~~~~------------------~~~~------------------------  259 (405)
T 2vi8_A          224 THKTLRGPRG-GMILCQE-QFAKQIDKAIFPGIQ------------------GGPL------------------------  259 (405)
T ss_dssp             SSSTTCCCSC-EEEEECH-HHHHHHHHHHTTTTC------------------SSCC------------------------
T ss_pred             ccccCCCCCC-eEEEEcH-HHHHHHHhhhccccc------------------CCCC------------------------
Confidence            9999998888 8888763 333322110000000                  0000                        


Q ss_pred             hhhhccCCCccchhhhhhhhhhhhhhhhhhhhhhhccccccccccCCCCCccccccchhhHHHHHHHHHhcCccHHHHHH
Q psy14299        242 AVDCSRGSMTFSTLLCFDLQGLLHQANATAATYLFQQDKFYDVSFDTGDKSVQCGRKVDAFKLWLMWKARGNLGFRHFVD  321 (448)
Q Consensus       242 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~  321 (448)
                                                                              .....++..+++.....+++++.+
T Consensus       260 --------------------------------------------------------~~~~aa~~~al~~~~~~~~~~~~~  283 (405)
T 2vi8_A          260 --------------------------------------------------------MHVIAAKAVAFGEALQDDFKAYAK  283 (405)
T ss_dssp             --------------------------------------------------------HHHHHHHHHHHHHHHSHHHHHHHH
T ss_pred             --------------------------------------------------------HHHHHHHHHHHHHHHhhhHHHHHH
Confidence                                                                    001112233455545567888999


Q ss_pred             HHHHHHHHHHHHhhcCCCeEEeccC-CceeeEEEEeeccCCCccccchhhhhhhhhhhHHHHHHHHhCCcEEEEeeec--
Q psy14299        322 NAVDCSRYFLSQISQRPGFRLVIPE-FQCTNICFWFIPVSLRDKVEDETWWSTLSKVAPRIKEKLVLGGTLMIGYQPL--  398 (448)
Q Consensus       322 ~~~~l~~~~~~~L~~~pg~~l~~~~-~~~~~v~f~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~L~~~g~~~~~~~~~--  398 (448)
                      +..++++++.+.|+++ |++++ .+ .....+.+.+.+.+..               ..++.+.|.++| +.+.++..  
T Consensus       284 ~~~~~~~~l~~~L~~~-g~~~~-~~~~~~~~~~~~~~~~~~~---------------~~~~~~~l~~~g-i~v~~g~~~~  345 (405)
T 2vi8_A          284 RVVDNAKRLASALQNE-GFTLV-SGGTDNHLLLVDLRPQQLT---------------GKTAEKVLDEVG-ITVNKNTIPY  345 (405)
T ss_dssp             HHHHHHHHHHHHHHHT-TCEEG-GGSCSSSEEEEECGGGTCC---------------HHHHHHHHHHHT-EECEEECCTT
T ss_pred             HHHHHHHHHHHHHHhC-CCeEe-cCCCCceEEEEEccCCCCC---------------HHHHHHHHHHcC-ceeccCcCcc
Confidence            9999999999999998 99986 43 2344555544221111               236778888888 44444321  


Q ss_pred             --CCcccccEEEEEecCCC----CCCHHHHHHHHHHHHHHHHHhH
Q psy14299        399 --QHRNLHNFFRLVTTCHP----ASSRQDMDYAIDQIELRGAEVD  437 (448)
Q Consensus       399 --~g~~~~~~lRis~~~~~----~~t~edid~l~~al~~~~~~~~  437 (448)
                        .+...++++|+++.  .    .++++|+++++++|+++.+++.
T Consensus       346 ~~~~~~~~~~iRis~~--~~~~~~~~~~~i~~~~~~l~~~~~~~~  388 (405)
T 2vi8_A          346 DPESPFVTSGIRIGTA--AVTTRGFGLEEMDEIAAIIGLVLKNVG  388 (405)
T ss_dssp             CSSCTTTCSEEEEECH--HHHHTTCCHHHHHHHHHHHHHHHTCTT
T ss_pred             ccCCCCCCCceEEeee--eeeecCCCHHHHHHHHHHHHHHHhccc
Confidence              11112368999994  3    4689999999999999987654

>3get_A Histidinol-phosphate aminotransferase; NP_281508.1, structural genomics, joint center for structural genomics; HET: LLP MSE; 2.01A {Campylobacter jejuni subsp}

Probab=99.86  E-value=5.7e-20  Score=183.38  Aligned_cols=271  Identities=11%  Similarity=0.046  Sum_probs=189.5

Q ss_pred             cEEEeCcHHHHHHHHHHHHHHhcCCcccccCCCCCCCeEEEecCCCchHHHHHHHHhCCCCCcEEEEec-CCCCCcCHHH
Q psy14299          4 KPFLLPGGSISNMYSICLARYRLDPDTKRKGLSHLPPLCMFTSEDSHYSMLKAAHWLGIGMDNVIRVKT-NERGQMICSF   82 (448)
Q Consensus         4 ~g~~t~ggT~an~~al~~a~~~~~~~~~~~G~~~~~~~~Vl~~~~~H~s~~~~~~~~g~~~~~v~~v~~-~~~g~id~e~   82 (448)
                      ..++|+|||+++..++.+...              +++.|+++...|.++...++..|.   +++.+|. ++++ +|+++
T Consensus        84 ~v~~~~g~~~a~~~~~~~l~~--------------~gd~vl~~~~~~~~~~~~~~~~g~---~~~~v~~~~~~~-~d~~~  145 (365)
T 3get_A           84 NIIIGAGSDQVIEFAIHSKLN--------------SKNAFLQAGVTFAMYEIYAKQCGA---KCYKTQSITHNL-DEFKK  145 (365)
T ss_dssp             GEEEESSHHHHHHHHHHHHCC--------------TTCEEEECSSCCTHHHHHHHHHTC---EEEECSSSSCCH-HHHHH
T ss_pred             eEEECCCHHHHHHHHHHHHhC--------------CCCEEEEeCCChHHHHHHHHHcCC---EEEEEecCCCCC-CCHHH
Confidence            578999999999888776533              567899999999999999999998   7889998 6678 99999


Q ss_pred             HHHHHHHhhhcCCCcEEEEEeccCCccccccCHHHHHHHHH--HcCCEEEEecccccccc--c----ccchhhhhcCCCC
Q psy14299         83 LEQTIQTSLAEKKIPLFVNATAGTTVLGAFDPLDEIATVCE--KYDLWMHVDACWGGSLI--F----SEKYSFVLKGINR  154 (448)
Q Consensus        83 Le~~l~~~~~~~~~~~lVv~~~~~t~tG~~~~l~~I~~ia~--~~g~~l~VD~A~~~~~~--~----~~~~~~~~~~~~~  154 (448)
                      |++++++      ++++|++++++|++|.+.|++++.++++  ++|+++++|++|+.+.+  .    .+.... .. ...
T Consensus       146 l~~~l~~------~~~~v~~~~p~nptG~~~~~~~l~~l~~~~~~~~~li~De~~~~~~~~~~~~~~~~~~~~-~~-~~~  217 (365)
T 3get_A          146 LYETHKD------EIKLIFLCLPNNPLGECLDASEATEFIKGVNEDCLVVIDAAYNEFASFKDSKKHLEPCEL-IK-EFD  217 (365)
T ss_dssp             HHHHTTT------TEEEEEEESSCTTTCCCCCHHHHHHHHHTSCTTSEEEEECTTHHHHHHHCGGGCCCHHHH-HH-HCT
T ss_pred             HHHHhCC------CCCEEEEcCCCCCCCCCcCHHHHHHHHHhCCCCcEEEEeCccHHHhcccCCcccccHhHH-hc-cCC
Confidence            9999863      5889999999999999999999999988  77999999999985442  1    111111 11 113


Q ss_pred             ccEEEECCccccCCC-CceEEEEEeccchhhhhccCCcccccccCcccccccCCCCCcccCCCCchhHHHHHHHHHhChH
Q psy14299        155 ANSVSWNPHKMLGAP-LQCSILLIKEKGLLHQANATAATYLFQQDKFYDVSFDTGDKSVQCGRKVDAFKLWLMWKARGNL  233 (448)
Q Consensus       155 aD~~~~s~hK~l~~P-~g~G~l~vr~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~  233 (448)
                      .++++.|+||+++.| ..+|+++. ++++..........|                 +      ...+            
T Consensus       218 ~~i~~~s~sK~~~~~G~r~G~~~~-~~~~~~~~~~~~~~~-----------------~------~~~~------------  261 (365)
T 3get_A          218 NVLYLGTFSKLYGLGGLRIGYGIA-NANIISAFYKLRAPF-----------------N------VSNL------------  261 (365)
T ss_dssp             TEEEEEESSSTTSCTTTCCEEEEE-CHHHHHHHHHHSCTT-----------------C------SCHH------------
T ss_pred             CEEEEeecchHhcCcchheEEEEc-CHHHHHHHHHhcCCC-----------------C------cCHH------------
Confidence            468888999998744 46788877 444433322111000                 0      0000            


Q ss_pred             HHHHHHHHhhhhccCCCccchhhhhhhhhhhhhhhhhhhhhhhccccccccccCCCCCccccccchhhHHHHHHHHHhcC
Q psy14299        234 GFRHFVDNAVDCSRGSMTFSTLLCFDLQGLLHQANATAATYLFQQDKFYDVSFDTGDKSVQCGRKVDAFKLWLMWKARGN  313 (448)
Q Consensus       234 g~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  313 (448)
                                                                                        .+..+..+++.  .
T Consensus       262 ------------------------------------------------------------------~~~~~~~~l~~--~  273 (365)
T 3get_A          262 ------------------------------------------------------------------ALKAAVAAMDD--D  273 (365)
T ss_dssp             ------------------------------------------------------------------HHHHHHHHHTC--H
T ss_pred             ------------------------------------------------------------------HHHHHHHHhCC--H
Confidence                                                                              01111122221  1


Q ss_pred             ccHHHHHHHHHHHHHHHHHHhhcCCCeEEeccCCceeeEEEEeeccCCCccccchhhhhhhhhhhHHHHHHHHhCCcEEE
Q psy14299        314 LGFRHFVDNAVDCSRYFLSQISQRPGFRLVIPEFQCTNICFWFIPVSLRDKVEDETWWSTLSKVAPRIKEKLVLGGTLMI  393 (448)
Q Consensus       314 ~G~~~~~~~~~~l~~~~~~~L~~~pg~~l~~~~~~~~~v~f~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~L~~~g~~~~  393 (448)
                      ++++++.++..++++++.+.|+++ |+++.  ++..+.+.+.+ +.. +               ..++.+.|.++| +.+
T Consensus       274 ~~~~~~~~~~~~~~~~l~~~l~~~-g~~~~--~~~~~~~~~~~-~~~-~---------------~~~~~~~l~~~g-i~v  332 (365)
T 3get_A          274 EFTEKTLENNFSQMELYKEFAKKH-NIKII--DSYTNFITYFF-DEK-N---------------STDLSEKLLKKG-III  332 (365)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHT-TCEEC--CCSSSEEEEEC-SSS-C---------------HHHHHHHHHTTT-EEC
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhC-CCEEC--CCCCeEEEEEC-CCC-C---------------HHHHHHHHHHCC-EEE
Confidence            456778888889999999999998 99875  34444444433 111 1               237888999998 555


Q ss_pred             EeeecCCcccccEEEEEecCCCCCCHHHHHHHHHHHHHHH
Q psy14299        394 GYQPLQHRNLHNFFRLVTTCHPASSRQDMDYAIDQIELRG  433 (448)
Q Consensus       394 ~~~~~~g~~~~~~lRis~~~~~~~t~edid~l~~al~~~~  433 (448)
                      .++...+   ++++|+++  +   +++|+++++++|+++.
T Consensus       333 ~~g~~~~---~~~iRis~--~---~~~~i~~l~~~l~~~l  364 (365)
T 3get_A          333 RNLKSYG---LNAIRITI--G---TSYENEKFFTEFDKIL  364 (365)
T ss_dssp             EECGGGT---CSEEEEEC--C---CHHHHHHHHHHHHHHH
T ss_pred             EECccCC---CCEEEEEc--C---CHHHHHHHHHHHHHHh
Confidence            5543333   37999998  3   8999999999999864

>3op7_A Aminotransferase class I and II; PLP-dependent transferase, structural genomics, joint center structural genomics, JCSG; HET: LLP UNL; 1.70A {Streptococcus suis 89} PDB: 3p6k_A*

Probab=99.85  E-value=4.8e-20  Score=184.63  Aligned_cols=283  Identities=11%  Similarity=0.059  Sum_probs=188.0

Q ss_pred             cEEEeCcHHHHHHHHHHHHHHhcCCcccccCCCCCCCeEEEecCCCchHHHHHHHHhCCCCCcEEEEecCC--CCCcCHH
Q psy14299          4 KPFLLPGGSISNMYSICLARYRLDPDTKRKGLSHLPPLCMFTSEDSHYSMLKAAHWLGIGMDNVIRVKTNE--RGQMICS   81 (448)
Q Consensus         4 ~g~~t~ggT~an~~al~~a~~~~~~~~~~~G~~~~~~~~Vl~~~~~H~s~~~~~~~~g~~~~~v~~v~~~~--~g~id~e   81 (448)
                      .+++|+|||+++..++.+...              +++.|+++...|.++...++..|.   +++.++.++  ++.+|++
T Consensus        83 ~v~~~~g~~~a~~~~~~~l~~--------------~gd~Vl~~~~~~~~~~~~~~~~g~---~~~~v~~~~~~~~~~d~~  145 (375)
T 3op7_A           83 QILQTNGATGANLLVLYSLIE--------------PGDHVISLYPTYQQLYDIPKSLGA---EVDLWQIEEENGWLPDLE  145 (375)
T ss_dssp             GEEEESHHHHHHHHHHHHHCC--------------TTCEEEEEESSCTHHHHHHHHTTC---EEEEEEEEGGGTTEECHH
T ss_pred             hEEEcCChHHHHHHHHHHhcC--------------CCCEEEEeCCCchhHHHHHHHcCC---EEEEEeccccCCCCCCHH
Confidence            579999999999998877643              567899999999999999999998   788888763  4568999


Q ss_pred             HHHHHHHHhhhcCCCcEEEEEeccCCccccccC---HHHHHHHHHHcCCEEEEecccccccccccchhhhhcCCCCccEE
Q psy14299         82 FLEQTIQTSLAEKKIPLFVNATAGTTVLGAFDP---LDEIATVCEKYDLWMHVDACWGGSLIFSEKYSFVLKGINRANSV  158 (448)
Q Consensus        82 ~Le~~l~~~~~~~~~~~lVv~~~~~t~tG~~~~---l~~I~~ia~~~g~~l~VD~A~~~~~~~~~~~~~~~~~~~~aD~~  158 (448)
                      +|++++++      ++++|++++++|++|.+.|   +++|.++|++||+++++|++|+..... +. ..... ....+.+
T Consensus       146 ~l~~~l~~------~~~~v~~~~~~nptG~~~~~~~l~~i~~la~~~~~~li~De~~~~~~~~-~~-~~~~~-~~~~~i~  216 (375)
T 3op7_A          146 KLRQLIRP------TTKMICINNANNPTGAVMDRTYLEELVEIASEVGAYILSDEVYRSFSEL-DV-PSIIE-VYDKGIA  216 (375)
T ss_dssp             HHHHHCCT------TCCEEEEESSCTTTCCCCCHHHHHHHHHHHHTTTCEEEEECCSCCCSSS-CC-CCHHH-HCTTEEE
T ss_pred             HHHHhhcc------CCeEEEEcCCCCCCCCCCCHHHHHHHHHHHHHcCCEEEEEccccccccc-CC-Cchhh-hcCCEEE
Confidence            99999864      5789999999999999999   999999999999999999998875442 10 10011 1124577


Q ss_pred             EECCccccCCC-CceEEEEEeccchhhhhccCCcccccccCcccccccCCCCCcccCCCCchhHHHHHHHHHhChHHHHH
Q psy14299        159 SWNPHKMLGAP-LQCSILLIKEKGLLHQANATAATYLFQQDKFYDVSFDTGDKSVQCGRKVDAFKLWLMWKARGNLGFRH  237 (448)
Q Consensus       159 ~~s~hK~l~~P-~g~G~l~vr~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~g~~~  237 (448)
                      +.+++|+++.| ..+|+++. ++++..........+..                     ....+..+++           
T Consensus       217 ~~s~sK~~~~~G~r~G~v~~-~~~l~~~~~~~~~~~~~---------------------~~~~~~~~~~-----------  263 (375)
T 3op7_A          217 VNSLSKTYSLPGIRIGWVAA-NHQVTDILRDYRDYTMI---------------------CAGVFDDLVA-----------  263 (375)
T ss_dssp             EEESSSSSSCGGGCCEEEEC-CHHHHHHHTTTGGGTTS---------------------CCCHHHHHHH-----------
T ss_pred             EeEChhhcCCcccceEEEEe-CHHHHHHHHHHHhhhcc---------------------CCCcHHHHHH-----------
Confidence            88999999744 33577766 44444433211100000                     0001111111           


Q ss_pred             HHHHhhhhccCCCccchhhhhhhhhhhhhhhhhhhhhhhccccccccccCCCCCccccccchhhHHHHHHHHHhcCccHH
Q psy14299        238 FVDNAVDCSRGSMTFSTLLCFDLQGLLHQANATAATYLFQQDKFYDVSFDTGDKSVQCGRKVDAFKLWLMWKARGNLGFR  317 (448)
Q Consensus       238 ~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~  317 (448)
                                                                                         ..+++. ....++
T Consensus       264 -------------------------------------------------------------------~~~l~~-~~~~~~  275 (375)
T 3op7_A          264 -------------------------------------------------------------------QLALAH-YQEILE  275 (375)
T ss_dssp             -------------------------------------------------------------------HHHHHT-HHHHHH
T ss_pred             -------------------------------------------------------------------HHHHhc-cHHHHH
Confidence                                                                               111111 112345


Q ss_pred             HHHHHHHHHHHHHHHHhhcCCCeEEeccCCceeeEEEEeeccCCCccccchhhhhhhhhhhHHHHHHHH-hCCcEEEEee
Q psy14299        318 HFVDNAVDCSRYFLSQISQRPGFRLVIPEFQCTNICFWFIPVSLRDKVEDETWWSTLSKVAPRIKEKLV-LGGTLMIGYQ  396 (448)
Q Consensus       318 ~~~~~~~~l~~~~~~~L~~~pg~~l~~~~~~~~~v~f~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~L~-~~g~~~~~~~  396 (448)
                      ++.++..++++++.+.|+++|+++++ . +..+.+.|...+.+.+               ..++.+.|+ ++| +.+.++
T Consensus       276 ~~~~~~~~~~~~l~~~l~~~~~~~~~-~-~~~~~~~~~~~~~~~~---------------~~~~~~~ll~~~g-i~v~~g  337 (375)
T 3op7_A          276 RNRHILEENLAILDQWIEEEPLVSYI-R-PAVVSTSFVKIAVDMP---------------MEDFCLQLLQEHG-VLLVPG  337 (375)
T ss_dssp             HHHHHHHHHHHHHHHHHHHCTTEEEC-C-CSSSSCEEEEECCSSC---------------HHHHHHHHHHHHC-EECEEG
T ss_pred             HHHHHHHHHHHHHHHHHhhCCCceEe-c-CCCeEEEeEEcCCCCC---------------HHHHHHHHHHhCC-EEEeCh
Confidence            56667788899999999999999875 3 3333333322232221               236777774 678 555544


Q ss_pred             ecCCcccccEEEEEecCCCCCCHHHHHHHHHHHHHHHHHhH
Q psy14299        397 PLQHRNLHNFFRLVTTCHPASSRQDMDYAIDQIELRGAEVD  437 (448)
Q Consensus       397 ~~~g~~~~~~lRis~~~~~~~t~edid~l~~al~~~~~~~~  437 (448)
                      ...+.  ++++|++++    .++++++++++.|+++.+++.
T Consensus       338 ~~~~~--~~~iRi~~~----~~~~~i~~~l~~l~~~l~~~~  372 (375)
T 3op7_A          338 NRFER--DGYVRLGFA----CEQETLIKGLEKLSQFLRRFD  372 (375)
T ss_dssp             GGGTC--TTEEEECCC----SCHHHHHHHHHHHHHHHGGGC
T ss_pred             hhhCC--CCeEEEEec----CCHHHHHHHHHHHHHHHHHHh
Confidence            33221  379999984    245899999999999887654

>2cb1_A O-acetyl homoserine sulfhydrylase; PLP enzyme, lyase, riken structural genomics/proteomics initiative, RSGI, structural genomics; HET: LLP; 2.0A {Thermus thermophilus}

Probab=99.85  E-value=6.7e-20  Score=186.93  Aligned_cols=143  Identities=12%  Similarity=0.062  Sum_probs=114.2

Q ss_pred             cEEEeCcHHHHHHHHHHHHHHhcCCcccccCCCCCCCeEEEecCCCchHHHHHHHH----hCCCCCcEEEEecCCCCCcC
Q psy14299          4 KPFLLPGGSISNMYSICLARYRLDPDTKRKGLSHLPPLCMFTSEDSHYSMLKAAHW----LGIGMDNVIRVKTNERGQMI   79 (448)
Q Consensus         4 ~g~~t~ggT~an~~al~~a~~~~~~~~~~~G~~~~~~~~Vl~~~~~H~s~~~~~~~----~g~~~~~v~~v~~~~~g~id   79 (448)
                      .+++|+|||+||..++.++..              +++.|+++..+|.++...+..    .|.   +++.++.      |
T Consensus        73 ~~~~~~~gt~a~~~al~~l~~--------------~gd~vi~~~~~~~~~~~~~~~~~~~~g~---~~~~~~~------~  129 (412)
T 2cb1_A           73 EAVVLASGQAATFAALLALLR--------------PGDEVVAAKGLFGQTIGLFGQVLSLMGV---TVRYVDP------E  129 (412)
T ss_dssp             EEEEESSHHHHHHHHHHTTCC--------------TTCEEEEETTCCHHHHHHHHHTTTTTTC---EEEEECS------S
T ss_pred             cEEEECCHHHHHHHHHHHHhC--------------CCCEEEEeCCCchhHHHHHHHHHHHcCC---EEEEECC------C
Confidence            578999999999998876522              566788999999988877543    455   6777775      3


Q ss_pred             HHHHHHHHHHhhhcCCCcEEEEEeccCCccccccCHHHHHHHHHHcCCEEEEecccccccccccchhhhhcCCCCccEEE
Q psy14299         80 CSFLEQTIQTSLAEKKIPLFVNATAGTTVLGAFDPLDEIATVCEKYDLWMHVDACWGGSLIFSEKYSFVLKGINRANSVS  159 (448)
Q Consensus        80 ~e~Le~~l~~~~~~~~~~~lVv~~~~~t~tG~~~~l~~I~~ia~~~g~~l~VD~A~~~~~~~~~~~~~~~~~~~~aD~~~  159 (448)
                      +++|++++++      ++++|++++++|++|.+.|+++|.++|++||+++|+|++|+.+........      ..+|+++
T Consensus       130 ~~~l~~~i~~------~~~~v~~~~~~n~~G~~~~l~~i~~l~~~~~~~li~D~~~~~~~~~~~~~~------~~~di~~  197 (412)
T 2cb1_A          130 PEAVREALSA------KTRAVFVETVANPALLVPDLEALATLAEEAGVALVVDNTFGAAGALCRPLA------WGAHVVV  197 (412)
T ss_dssp             HHHHHHHCCT------TEEEEEEESSCTTTCCCCCHHHHHHHHHHHTCEEEEECGGGTTTTSCCGGG------GTCSEEE
T ss_pred             HHHHHHHhcc------CCeEEEEeCCCCCCcccccHHHHHHHHHHcCCEEEEECCCccccccCCccc------cCCeEEE
Confidence            8899988854      588999999999999999999999999999999999999987722111111      1479999


Q ss_pred             ECCccccCCCCc-eEEEEEeccc
Q psy14299        160 WNPHKMLGAPLQ-CSILLIKEKG  181 (448)
Q Consensus       160 ~s~hK~l~~P~g-~G~l~vr~~~  181 (448)
                      .|+||++++|.+ .|.+++.++.
T Consensus       198 ~S~~K~~~~~~~~~G~~~~~~~~  220 (412)
T 2cb1_A          198 ESLTKWASGHGSVLGGAVLSRET  220 (412)
T ss_dssp             EETTTTTTCSSCCCCEEEEECCC
T ss_pred             ECCcccccCCCCcEEEEEEeccc
Confidence            999999999987 7887776643

>3h14_A Aminotransferase, classes I and II; YP_167802.1, SPO258 structural genomics, PSI-2, protein structure initiative; HET: MSE; 1.90A {Silicibacter pomeroyi dss-3}

Probab=99.85  E-value=6e-20  Score=185.12  Aligned_cols=284  Identities=9%  Similarity=0.038  Sum_probs=188.2

Q ss_pred             cEEEeCcHHHHHHHHHHHHHHhcCCcccccCCCCCCCeEEEecCCCchHHHHHHHHhCCCCCcEEEEecCCCC--CcCHH
Q psy14299          4 KPFLLPGGSISNMYSICLARYRLDPDTKRKGLSHLPPLCMFTSEDSHYSMLKAAHWLGIGMDNVIRVKTNERG--QMICS   81 (448)
Q Consensus         4 ~g~~t~ggT~an~~al~~a~~~~~~~~~~~G~~~~~~~~Vl~~~~~H~s~~~~~~~~g~~~~~v~~v~~~~~g--~id~e   81 (448)
                      ..++|+|||+++..++.+...              +++.|+++...|.++...++..|.   +++.+|.++++  .+|++
T Consensus        93 ~v~~t~g~~~al~~~~~~l~~--------------~gd~vl~~~p~~~~~~~~~~~~g~---~~~~v~~~~~~~~~~d~~  155 (391)
T 3h14_A           93 RVVITPGSSGGFLLAFTALFD--------------SGDRVGIGAPGYPSYRQILRALGL---VPVDLPTAPENRLQPVPA  155 (391)
T ss_dssp             GEEEESSHHHHHHHHHHHHCC--------------TTCEEEEEESCCHHHHHHHHHTTC---EEEEEECCGGGTTSCCHH
T ss_pred             HEEEecChHHHHHHHHHHhcC--------------CCCEEEEcCCCCccHHHHHHHcCC---EEEEeecCcccCCCCCHH
Confidence            579999999999888876543              567788999999999999999998   78999987644  77999


Q ss_pred             HHHHHHHHhhhcCCCcEEEEEeccCCccccccC---HHHHHHHHHHcCCEEEEecccccccccccchhhhhcCCCCccEE
Q psy14299         82 FLEQTIQTSLAEKKIPLFVNATAGTTVLGAFDP---LDEIATVCEKYDLWMHVDACWGGSLIFSEKYSFVLKGINRANSV  158 (448)
Q Consensus        82 ~Le~~l~~~~~~~~~~~lVv~~~~~t~tG~~~~---l~~I~~ia~~~g~~l~VD~A~~~~~~~~~~~~~~~~~~~~aD~~  158 (448)
                      +|+++         ++++|++++++|++|.+.|   +++|+++|++||+++++|++|+..........  .......+++
T Consensus       156 ~l~~~---------~~~~v~i~~p~nptG~~~~~~~l~~l~~~~~~~~~~li~De~~~~~~~~~~~~~--~~~~~~~~i~  224 (391)
T 3h14_A          156 DFAGL---------DLAGLMVASPANPTGTMLDHAAMGALIEAAQAQGASFISDEIYHGIEYEAKAVT--ALELTDECYV  224 (391)
T ss_dssp             HHTTS---------CCSEEEEESSCTTTCCCCCHHHHHHHHHHHHHTTCEEEEECTTTTCBSSSCCCC--GGGTCSSSEE
T ss_pred             HHHhc---------CCeEEEECCCCCCCCccCCHHHHHHHHHHHHHcCCEEEEECcchhcccCCCCcC--hhhcCCCEEE
Confidence            98776         3678999999999999987   88999999999999999999986543211101  1112234678


Q ss_pred             EECCccccC-CCCceEEEEEeccchhhhhccCCcccccccCcccccccCCCCCcccCCCCchhHHHHHHHHHhChHHHHH
Q psy14299        159 SWNPHKMLG-APLQCSILLIKEKGLLHQANATAATYLFQQDKFYDVSFDTGDKSVQCGRKVDAFKLWLMWKARGNLGFRH  237 (448)
Q Consensus       159 ~~s~hK~l~-~P~g~G~l~vr~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~g~~~  237 (448)
                      +.+++|+++ ...++|+++.+++ +..........+..                                          
T Consensus       225 ~~s~sK~~g~~G~r~G~~~~~~~-~~~~~~~~~~~~~~------------------------------------------  261 (391)
T 3h14_A          225 INSFSKYFSMTGWRVGWMVVPED-QVRVVERIAQNMFI------------------------------------------  261 (391)
T ss_dssp             EEESSSTTCCTTSCCEEEECCGG-GHHHHHHHHHHTTC------------------------------------------
T ss_pred             EEechhccCCccceeEEEEeCHH-HHHHHHHHHhhhcc------------------------------------------
Confidence            889999997 3445787776443 32221110000000                                          


Q ss_pred             HHHHhhhhccCCCccchhhhhhhhhhhhhhhhhhhhhhhccccccccccCCCCCccccccchhhHHHHHHHHHhcCccHH
Q psy14299        238 FVDNAVDCSRGSMTFSTLLCFDLQGLLHQANATAATYLFQQDKFYDVSFDTGDKSVQCGRKVDAFKLWLMWKARGNLGFR  317 (448)
Q Consensus       238 ~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~  317 (448)
                                                                               +.+.+.+..+..+++  ..++++
T Consensus       262 ---------------------------------------------------------~~~~~~~~a~~~~l~--~~~~~~  282 (391)
T 3h14_A          262 ---------------------------------------------------------CAPHASQVAALAALD--CDAELQ  282 (391)
T ss_dssp             ---------------------------------------------------------CCCHHHHHHHHHHTT--CHHHHH
T ss_pred             ---------------------------------------------------------CCCHHHHHHHHHHhC--ChHHHH
Confidence                                                                     000011111112222  334567


Q ss_pred             HHHHHHHHHHHHHHHHhhcCCCeEEeccCCceeeEEEEeecc-CCCccccchhhhhhhhhhhHHHHHHHHhC-CcEEEEe
Q psy14299        318 HFVDNAVDCSRYFLSQISQRPGFRLVIPEFQCTNICFWFIPV-SLRDKVEDETWWSTLSKVAPRIKEKLVLG-GTLMIGY  395 (448)
Q Consensus       318 ~~~~~~~~l~~~~~~~L~~~pg~~l~~~~~~~~~v~f~~~~~-~~~~~~~~~~~~~~~~~~~~~i~~~L~~~-g~~~~~~  395 (448)
                      ++.++..++++++.+.|+++ ++..+ .++..+.+.+...+. +.+               ..++.+.|.++ | +.+.+
T Consensus       283 ~~~~~~~~~~~~l~~~l~~~-~~~~~-~~~~~~~~~~~~~~~~~~~---------------~~~~~~~l~~~~g-i~v~~  344 (391)
T 3h14_A          283 ANLDVYKANRKLMLERLPKA-GFTRI-APPDGAFYVYADVSDLTDD---------------SRAFAAEILEKAG-VAVTP  344 (391)
T ss_dssp             HHHHHHHHHHHHHHHHHHHH-TCCCB-CCCCBTTEEEEECTTTCSC---------------HHHHHHHHHHHHC-EECEE
T ss_pred             HHHHHHHHHHHHHHHHHHHc-CCCcc-cCCCeeEEEEEecCccCCC---------------HHHHHHHHHHHCC-EEEcC
Confidence            77888889999999999988 44433 344444444422221 111               23678887776 8 55555


Q ss_pred             eecCCc-ccccEEEEEecCCCCCCHHHHHHHHHHHHHHHHHhHHh
Q psy14299        396 QPLQHR-NLHNFFRLVTTCHPASSRQDMDYAIDQIELRGAEVDLE  439 (448)
Q Consensus       396 ~~~~g~-~~~~~lRis~~~~~~~t~edid~l~~al~~~~~~~~~~  439 (448)
                      +...+. ..++++|+++.  .  +++|++++++.|+++.++....
T Consensus       345 g~~~~~~~~~~~iRis~~--~--~~~~i~~~l~~l~~~~~~~~~~  385 (391)
T 3h14_A          345 GLDFDPERGAGTLRFSYA--R--ATADIEEGLDRLEAFMQARGEG  385 (391)
T ss_dssp             GGGTCTTTGGGEEEEECC--S--CHHHHHHHHHHHHHHHHHC---
T ss_pred             chhhCCCCCCCeEEEEec--C--CHHHHHHHHHHHHHHHHHhccc
Confidence            433332 23479999994  2  7899999999999998876543

>1jg8_A L-ALLO-threonine aldolase; glycine biosynthesis, pyridoxal-5'- phosphate, calcium binding site, structural genomics, PSI; HET: LLP; 1.80A {Thermotoga maritima} SCOP: c.67.1.1 PDB: 1lw4_A* 1lw5_A* 1m6s_A* 2fm1_A*

Probab=99.85  E-value=1e-20  Score=187.38  Aligned_cols=157  Identities=18%  Similarity=0.186  Sum_probs=111.5

Q ss_pred             cEEEeCcHHHHHHHHHHHHHHhcCCcccccCCCCCCCeEEEecCCCchHHHH---HHHHhCCCCCcEEEEecCCCCCcCH
Q psy14299          4 KPFLLPGGSISNMYSICLARYRLDPDTKRKGLSHLPPLCMFTSEDSHYSMLK---AAHWLGIGMDNVIRVKTNERGQMIC   80 (448)
Q Consensus         4 ~g~~t~ggT~an~~al~~a~~~~~~~~~~~G~~~~~~~~Vl~~~~~H~s~~~---~~~~~g~~~~~v~~v~~~~~g~id~   80 (448)
                      ..++|+|||+++.+++.+...              +++.|+++..+|.+...   .+...|.   +++.+ .++++.+|+
T Consensus        55 ~~~~~~~gt~a~~~~~~~~~~--------------~gd~Vl~~~~~~~~~~~~~~~~~~~g~---~~~~v-~~~~~~~d~  116 (347)
T 1jg8_A           55 AALFVPSGTMGNQVSIMAHTQ--------------RGDEVILEADSHIFWYEVGAMAVLSGV---MPHPV-PGKNGAMDP  116 (347)
T ss_dssp             EEEEESCHHHHHHHHHHHHCC--------------TTCEEEEETTCHHHHSSTTHHHHHTCC---EEEEE-CEETTEECH
T ss_pred             eEEEecCcHHHHHHHHHHhcC--------------CCCEEEEcCcchhhhccccchhhccCe---EEEEe-cCCCCccCH
Confidence            468999999998888765432              66789999999987654   5566777   67777 556788999


Q ss_pred             HHHHHHHHHhhhcCCCcEEEEEeccCCcc-ccccC---HHHHHHHHHHcCCEEEEecccccccccc-c-chhhhhcCCCC
Q psy14299         81 SFLEQTIQTSLAEKKIPLFVNATAGTTVL-GAFDP---LDEIATVCEKYDLWMHVDACWGGSLIFS-E-KYSFVLKGINR  154 (448)
Q Consensus        81 e~Le~~l~~~~~~~~~~~lVv~~~~~t~t-G~~~~---l~~I~~ia~~~g~~l~VD~A~~~~~~~~-~-~~~~~~~~~~~  154 (448)
                      ++|++++++......++++|++++++|++ |.+.|   +++|.++|++||+++++|+||..+.... + .......   .
T Consensus       117 ~~l~~~i~~~~~~~~~~~~v~~~~~~npt~G~~~~~~~l~~i~~~a~~~~~~li~D~a~~~~~~~~~~~~~~~~~~---~  193 (347)
T 1jg8_A          117 DDVRKAIRPRNIHFPRTSLIAIENTHNRSGGRVVPLENIKEICTIAKEHGINVHIDGARIFNASIASGVPVKEYAG---Y  193 (347)
T ss_dssp             HHHHHHSCCSCTTSCCEEEEEEESSBTTTTSBCCCHHHHHHHHHHHHHHTCEEEEEETTHHHHHHHHCCCHHHHHH---T
T ss_pred             HHHHHHhccccccccCceEEEEeccccccCCccCcHHHHHHHHHHHHHCCCEEEeehhhhhcchhhcCCChHHhcc---c
Confidence            99999985310011258899999999999 98866   5788999999999999999875432111 1 0111111   3


Q ss_pred             ccEEEECCccccCCCCceEEEEEeccchh
Q psy14299        155 ANSVSWNPHKMLGAPLQCSILLIKEKGLL  183 (448)
Q Consensus       155 aD~~~~s~hK~l~~P~g~G~l~vr~~~~~  183 (448)
                      +|.+++++||++++|.|  .+++.++++.
T Consensus       194 ~d~~~~s~sK~l~~~~G--~~~~~~~~~~  220 (347)
T 1jg8_A          194 ADSVMFCLSKGLCAPVG--SVVVGDRDFI  220 (347)
T ss_dssp             CSEEEEESSSTTCCSSC--EEEEECHHHH
T ss_pred             ccEEEEecccccCCCce--EEEEcCHHHH
Confidence            68889999999998754  3344454443

>1o4s_A Aspartate aminotransferase; TM1255, structural genomics, JCS protein structure initiative, joint center for structural G transferase; HET: PLP; 1.90A {Thermotoga maritima} SCOP: c.67.1.1

Probab=99.85  E-value=5.4e-20  Score=185.68  Aligned_cols=276  Identities=12%  Similarity=0.022  Sum_probs=189.3

Q ss_pred             cEEEeCcHHHHHHHHHHHHHHhcCCcccccCCCCCCCeEEEecCCCchHHHHHHHHhCCCCCcEEEEecCC--CCCcCHH
Q psy14299          4 KPFLLPGGSISNMYSICLARYRLDPDTKRKGLSHLPPLCMFTSEDSHYSMLKAAHWLGIGMDNVIRVKTNE--RGQMICS   81 (448)
Q Consensus         4 ~g~~t~ggT~an~~al~~a~~~~~~~~~~~G~~~~~~~~Vl~~~~~H~s~~~~~~~~g~~~~~v~~v~~~~--~g~id~e   81 (448)
                      .+++|+|||+++..++.++..              +++.|+++..+|.++...++..|.   +++.+|.++  ++.+|++
T Consensus       103 ~v~~~~g~t~al~~~~~~l~~--------------~gd~Vl~~~~~~~~~~~~~~~~g~---~~~~v~~~~~~~~~~d~~  165 (389)
T 1o4s_A          103 QVVVTNGAKQALFNAFMALLD--------------PGDEVIVFSPVWVSYIPQIILAGG---TVNVVETFMSKNFQPSLE  165 (389)
T ss_dssp             GEEEESHHHHHHHHHHHHHCC--------------TTCEEEEEESCCTTHHHHHHHTTC---EEEEEECCGGGTTCCCHH
T ss_pred             HEEEecCHHHHHHHHHHHhCC--------------CCCEEEEcCCCchhHHHHHHHcCC---EEEEEecCCccCCCCCHH
Confidence            578999999999988877632              567788999999999999999888   788999875  4688999


Q ss_pred             HHHHHHHHhhhcCCCcEEEEEeccCCccccccC---HHHHHHHHHHcCCEEEEecccccccccccch-hhhhcCCCCccE
Q psy14299         82 FLEQTIQTSLAEKKIPLFVNATAGTTVLGAFDP---LDEIATVCEKYDLWMHVDACWGGSLIFSEKY-SFVLKGINRANS  157 (448)
Q Consensus        82 ~Le~~l~~~~~~~~~~~lVv~~~~~t~tG~~~~---l~~I~~ia~~~g~~l~VD~A~~~~~~~~~~~-~~~~~~~~~aD~  157 (448)
                      +|++++++      ++++|++++++|++|.+.|   +++|.++|++||+++++|++|+.+....+.. -..+.+....|+
T Consensus       166 ~l~~~l~~------~~~~v~~~~p~nptG~~~~~~~l~~l~~~~~~~~~~li~Dea~~~~~~~g~~~~~~~~~~~~~~~i  239 (389)
T 1o4s_A          166 EVEGLLVG------KTKAVLINSPNNPTGVVYRREFLEGLVRLAKKRNFYIISDEVYDSLVYTDEFTSILDVSEGFDRIV  239 (389)
T ss_dssp             HHHHTCCT------TEEEEEEESSCTTTCCCCCHHHHHHHHHHHHHHTCEEEEECTTTTSBCSSCCCCHHHHCSSSTTEE
T ss_pred             HHHHhccc------CceEEEEcCCCCCCCCCCCHHHHHHHHHHHHHcCCEEEEEccccccccCCCCCCHhhcCCCCCcEE
Confidence            99998854      4788999999999999877   9999999999999999999999765421100 011222235789


Q ss_pred             EEECCccccCCCCc--eEEEEEeccchhhhhccCCcccccccCcccccccCCCCCcccCCCCchhHHHHHHHHHhChHHH
Q psy14299        158 VSWNPHKMLGAPLQ--CSILLIKEKGLLHQANATAATYLFQQDKFYDVSFDTGDKSVQCGRKVDAFKLWLMWKARGNLGF  235 (448)
Q Consensus       158 ~~~s~hK~l~~P~g--~G~l~vr~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~g~  235 (448)
                      ++.++||+++ ++|  +|++++++ ++..........+..                                   +    
T Consensus       240 ~~~s~sK~~~-~~G~r~G~l~~~~-~~~~~l~~~~~~~~~-----------------------------------~----  278 (389)
T 1o4s_A          240 YINGFSKSHS-MTGWRVGYLISSE-KVATAVSKIQSHTTS-----------------------------------C----  278 (389)
T ss_dssp             EEEESTTTTT-CGGGCCEEEECCH-HHHHHHHHHHHHHTC-----------------------------------S----
T ss_pred             EEeechhhcC-CcccceEEEEeCH-HHHHHHHHHhhhccc-----------------------------------C----
Confidence            9999999996 445  78888754 333222110000000                                   0    


Q ss_pred             HHHHHHhhhhccCCCccchhhhhhhhhhhhhhhhhhhhhhhccccccccccCCCCCccccccchhhHHHHHHHHHhcCcc
Q psy14299        236 RHFVDNAVDCSRGSMTFSTLLCFDLQGLLHQANATAATYLFQQDKFYDVSFDTGDKSVQCGRKVDAFKLWLMWKARGNLG  315 (448)
Q Consensus       236 ~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G  315 (448)
                                                                                  .+   .+....+...+.. +
T Consensus       279 ------------------------------------------------------------~~---~~~~~a~~~~l~~-~  294 (389)
T 1o4s_A          279 ------------------------------------------------------------IN---TVAQYAALKALEV-D  294 (389)
T ss_dssp             ------------------------------------------------------------CC---HHHHHHHHHHTTC-C
T ss_pred             ------------------------------------------------------------CC---HHHHHHHHHHHhc-c
Confidence                                                                        00   0000111112222 3


Q ss_pred             HHHHHHHHHHHHHHHHHHhhcCCCeEEeccCCceeeEEEEeeccCCCccccchhhhhhhhhhhHHHHHHHH-hCCcEEEE
Q psy14299        316 FRHFVDNAVDCSRYFLSQISQRPGFRLVIPEFQCTNICFWFIPVSLRDKVEDETWWSTLSKVAPRIKEKLV-LGGTLMIG  394 (448)
Q Consensus       316 ~~~~~~~~~~l~~~~~~~L~~~pg~~l~~~~~~~~~v~f~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~L~-~~g~~~~~  394 (448)
                      ++++.++..++++++.+.|+++ |++++ . +..+.+.+...+  .+               ..++.+.|. ++| +.+.
T Consensus       295 ~~~~~~~~~~~~~~l~~~L~~~-g~~~~-~-~~~~~~~~~~~~--~~---------------~~~l~~~l~~~~g-i~v~  353 (389)
T 1o4s_A          295 NSYMVQTFKERKNFVVERLKKM-GVKFV-E-PEGAFYLFFKVR--GD---------------DVKFCERLLEEKK-VALV  353 (389)
T ss_dssp             CHHHHHHHHHHHHHHHHHHHHT-TCCCC-C-CSBSSEEEEECS--SC---------------HHHHHHHHHHHHC-EECE
T ss_pred             HHHHHHHHHHHHHHHHHHHHhc-CCeee-c-CCcceEEEEeCC--CC---------------HHHHHHHHHHHCC-EEEe
Confidence            7778888899999999999998 88875 3 444544442212  11               236888887 778 5555


Q ss_pred             eeecCCcccccEEEEEecCCCCCCHHHHHHHHHHHHHHHH
Q psy14299        395 YQPLQHRNLHNFFRLVTTCHPASSRQDMDYAIDQIELRGA  434 (448)
Q Consensus       395 ~~~~~g~~~~~~lRis~~~~~~~t~edid~l~~al~~~~~  434 (448)
                      ++...+.  ++++|+++.    +++++++++++.|+++.+
T Consensus       354 ~g~~f~~--~~~~Ris~~----~~~~~l~~~l~~l~~~l~  387 (389)
T 1o4s_A          354 PGSAFLK--PGFVRLSFA----TSIERLTEALDRIEDFLN  387 (389)
T ss_dssp             EGGGGTC--TTEEEEECC----SCHHHHHHHHHHHHHHHT
T ss_pred             CchhcCC--CCeEEEEEe----CCHHHHHHHHHHHHHHHh
Confidence            4432222  369999994    389999999999987753

>2z61_A Probable aspartate aminotransferase 2; amino acid aminotransferase, kynurenine aminotransferase, MJ0684, cytoplasm; HET: LLP; 2.20A {Methanococcus jannaschii}

Probab=99.85  E-value=1.9e-20  Score=187.38  Aligned_cols=275  Identities=9%  Similarity=0.058  Sum_probs=184.1

Q ss_pred             cEEEeCcHHHHHHHHHHHHHHhcCCcccccCCCCCCCeEEEecCCCchHHHHHHHHhCCCCCcEEEEecCCCCCcCHHHH
Q psy14299          4 KPFLLPGGSISNMYSICLARYRLDPDTKRKGLSHLPPLCMFTSEDSHYSMLKAAHWLGIGMDNVIRVKTNERGQMICSFL   83 (448)
Q Consensus         4 ~g~~t~ggT~an~~al~~a~~~~~~~~~~~G~~~~~~~~Vl~~~~~H~s~~~~~~~~g~~~~~v~~v~~~~~g~id~e~L   83 (448)
                      ..++|+|||+++..++.++..              +++.|+++..+|.++...++..|.   +++.+|      +|+++|
T Consensus        91 ~v~~~~g~~~a~~~~~~~~~~--------------~gd~vl~~~p~~~~~~~~~~~~g~---~~~~v~------~d~~~l  147 (370)
T 2z61_A           91 NIIITGGSSLGLFFALSSIID--------------DGDEVLIQNPCYPCYKNFIRFLGA---KPVFCD------FTVESL  147 (370)
T ss_dssp             GEEEESSHHHHHHHHHHHHCC--------------TTCEEEEESSCCTHHHHHHHHTTC---EEEEEC------SSHHHH
T ss_pred             hEEECCChHHHHHHHHHHhcC--------------CCCEEEEeCCCchhHHHHHHHcCC---EEEEeC------CCHHHH
Confidence            589999999999988877633              567789999999999999999888   677777      699999


Q ss_pred             HHHHHHhhhcCCCcEEEEEeccCCccccccCHHHHHHHHHHcCCEEEEecccccccccccchh-hhhcCCCCccEEEECC
Q psy14299         84 EQTIQTSLAEKKIPLFVNATAGTTVLGAFDPLDEIATVCEKYDLWMHVDACWGGSLIFSEKYS-FVLKGINRANSVSWNP  162 (448)
Q Consensus        84 e~~l~~~~~~~~~~~lVv~~~~~t~tG~~~~l~~I~~ia~~~g~~l~VD~A~~~~~~~~~~~~-~~~~~~~~aD~~~~s~  162 (448)
                      ++++++      ++++|++++++|++|.+.|++ |.++|++||+++++|++|+.+........ ..+.+....|+++.++
T Consensus       148 ~~~l~~------~~~~v~~~~p~nptG~~~~~~-l~~~~~~~~~~li~De~~~~~~~~g~~~~~~~~~~~~~~~i~~~s~  220 (370)
T 2z61_A          148 EEALSD------KTKAIIINSPSNPLGEVIDRE-IYEFAYENIPYIISDEIYNGLVYEGKCYSAIEFDENLEKTILINGF  220 (370)
T ss_dssp             HHHCCS------SEEEEEEESSCTTTCCCCCHH-HHHHHHHHCSEEEEECTTTTCBSSSCCCCGGGTCTTCSSEEEEEES
T ss_pred             HHhccc------CceEEEEcCCCCCcCcccCHH-HHHHHHHcCCEEEEEcchhhcccCCCCcCHHHccCCCCcEEEEecC
Confidence            998854      478899999999999999999 99999999999999999997654211000 1111123568999999


Q ss_pred             ccccCCCCc--eEEEEEeccchhhhhccCCcccccccCcccccccCCCCCcccCCCCchhHHHHHHHHHhChHHHHHHHH
Q psy14299        163 HKMLGAPLQ--CSILLIKEKGLLHQANATAATYLFQQDKFYDVSFDTGDKSVQCGRKVDAFKLWLMWKARGNLGFRHFVD  240 (448)
Q Consensus       163 hK~l~~P~g--~G~l~vr~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~g~~~~i~  240 (448)
                      ||+++ ++|  +|+++.++ ++..........+...                     ...+.                  
T Consensus       221 sK~~~-~~G~r~G~~~~~~-~~~~~~~~~~~~~~~~---------------------~~~~~------------------  259 (370)
T 2z61_A          221 SKLYA-MTGWRIGYVISND-EIIEAILKLQQNLFIS---------------------APTIS------------------  259 (370)
T ss_dssp             TTTTT-CGGGCCEEEECCH-HHHHHHHHHHHHHTSS---------------------SCHHH------------------
T ss_pred             hhccC-CccceEEEEEECH-HHHHHHHHHHhhcccC---------------------CCHHH------------------
Confidence            99986 445  78887755 3333221100000000                     00000                  


Q ss_pred             HhhhhccCCCccchhhhhhhhhhhhhhhhhhhhhhhccccccccccCCCCCccccccchhhHHHHHHHHHhcCccHHHHH
Q psy14299        241 NAVDCSRGSMTFSTLLCFDLQGLLHQANATAATYLFQQDKFYDVSFDTGDKSVQCGRKVDAFKLWLMWKARGNLGFRHFV  320 (448)
Q Consensus       241 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~  320 (448)
                                                                                  +..+..+++..+.++++++.
T Consensus       260 ------------------------------------------------------------~~a~~~~l~~~~~~~~~~~~  279 (370)
T 2z61_A          260 ------------------------------------------------------------QYAALKAFEKETEREINSMI  279 (370)
T ss_dssp             ------------------------------------------------------------HHHHGGGGSHHHHHHHHHHH
T ss_pred             ------------------------------------------------------------HHHHHHHHhccCHHHHHHHH
Confidence                                                                        00001111110123466677


Q ss_pred             HHHHHHHHHHHHHhhcCCCeEEeccCCceeeEEEEeeccCCCccccchhhhhhhhhhhHHHHHHHH-hCCcEEEEeeecC
Q psy14299        321 DNAVDCSRYFLSQISQRPGFRLVIPEFQCTNICFWFIPVSLRDKVEDETWWSTLSKVAPRIKEKLV-LGGTLMIGYQPLQ  399 (448)
Q Consensus       321 ~~~~~l~~~~~~~L~~~pg~~l~~~~~~~~~v~f~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~L~-~~g~~~~~~~~~~  399 (448)
                      ++..++++++.+.|+++ |+++.  .+..+.+.+...+.  +               ..++.+.|. ++| +.+.++...
T Consensus       280 ~~~~~~~~~l~~~L~~~-g~~~~--~~~~~~~~~~~~~~--~---------------~~~~~~~l~~~~g-i~v~~g~~f  338 (370)
T 2z61_A          280 KEFDRRRRLVLKYVKDF-GWEVN--NPIGAYYVFPNIGE--D---------------GREFAYKLLKEKF-VALTPGIGF  338 (370)
T ss_dssp             HHHHHHHHHHHHHHHHT-TCBCC--CCCBTTEECCBCSS--C---------------HHHHHHHHHHHHC-EECEEGGGG
T ss_pred             HHHHHHHHHHHHHHHHc-CCeec--CCCcceEEEEecCC--C---------------HHHHHHHHHHhCC-EEEeCchhh
Confidence            88889999999999998 88765  34444443311111  1               236788887 678 555544322


Q ss_pred             CcccccEEEEEecCCCCCCHHHHHHHHHHHHHHHH
Q psy14299        400 HRNLHNFFRLVTTCHPASSRQDMDYAIDQIELRGA  434 (448)
Q Consensus       400 g~~~~~~lRis~~~~~~~t~edid~l~~al~~~~~  434 (448)
                      +...++++|+++  +  +++++++++++.|+++.+
T Consensus       339 ~~~~~~~~Ri~~--~--~~~~~i~~~~~~l~~~l~  369 (370)
T 2z61_A          339 GSKGKNYIRISY--A--NSYENIKEGLERIKEFLN  369 (370)
T ss_dssp             CGGGSSBEEEEC--C--SCHHHHHHHHHHHHHHHC
T ss_pred             CCCCCCEEEEEE--e--CCHHHHHHHHHHHHHHHh
Confidence            211237899999  4  699999999999987753

>3cq5_A Histidinol-phosphate aminotransferase; PLP, PMP, amino-acid biosynthesis, histidine biosynthesis, pyridoxal phosphate; HET: PMP; 1.80A {Corynebacterium glutamicum} PDB: 3cq6_A* 3cq4_A

Probab=99.85  E-value=4.1e-19  Score=177.83  Aligned_cols=272  Identities=11%  Similarity=0.010  Sum_probs=188.3

Q ss_pred             cEEEeCcHHHHHHHHHHHHHHhcCCcccccCCCCCCCeEEEecCCCchHHHHHHHHhCCCCCcEEEEecCCCCCcCHHHH
Q psy14299          4 KPFLLPGGSISNMYSICLARYRLDPDTKRKGLSHLPPLCMFTSEDSHYSMLKAAHWLGIGMDNVIRVKTNERGQMICSFL   83 (448)
Q Consensus         4 ~g~~t~ggT~an~~al~~a~~~~~~~~~~~G~~~~~~~~Vl~~~~~H~s~~~~~~~~g~~~~~v~~v~~~~~g~id~e~L   83 (448)
                      ..++|+|+|+++..++.+...              +++.|+++..+|.++...++..|.   +++.+|.++++.+|+++|
T Consensus        94 ~v~~~~G~~~al~~~~~~l~~--------------~gd~Vl~~~~~y~~~~~~~~~~g~---~~~~v~~~~~~~~d~~~l  156 (369)
T 3cq5_A           94 NLWAANGSNEILQQLLQAFGG--------------PGRTALGFQPSYSMHPILAKGTHT---EFIAVSRGADFRIDMDVA  156 (369)
T ss_dssp             GEEEESHHHHHHHHHHHHHCS--------------TTCEEEEEESSCTHHHHHHHHTTC---EEEEEECCTTSSCCHHHH
T ss_pred             hEEECCChHHHHHHHHHHhcC--------------CCCEEEEcCCChHHHHHHHHHcCC---EEEEecCCcCCCCCHHHH
Confidence            478999999998888766533              567788999999999999999888   788999887789999999


Q ss_pred             HHHHHHhhhcCCCcEEEEEeccCCccccccCHHHHHHHHHHcCCEEEEecccccccccccchhhhhcCCCCccEEEECCc
Q psy14299         84 EQTIQTSLAEKKIPLFVNATAGTTVLGAFDPLDEIATVCEKYDLWMHVDACWGGSLIFSEKYSFVLKGINRANSVSWNPH  163 (448)
Q Consensus        84 e~~l~~~~~~~~~~~lVv~~~~~t~tG~~~~l~~I~~ia~~~g~~l~VD~A~~~~~~~~~~~~~~~~~~~~aD~~~~s~h  163 (448)
                      ++++++.     ++++|++++++|++|.+.|++++.++++.+++++++|++|+.+....+.. .........++++.++|
T Consensus       157 ~~~i~~~-----~~~~v~~~~~~nptG~~~~~~~l~~l~~~~~~~li~De~~~~~~~~~~~~-~~~~~~~~~~i~~~s~s  230 (369)
T 3cq5_A          157 LEEIRAK-----QPDIVFVTTPNNPTGDVTSLDDVERIINVAPGIVIVDEAYAEFSPSPSAT-TLLEKYPTKLVVSRTMS  230 (369)
T ss_dssp             HHHHHHH-----CCSEEEEESSCTTTCCCCCHHHHHHHHHHCSSEEEEECTTGGGCCSCCGG-GGTTTCTTTEEEEEESS
T ss_pred             HHHhhcc-----CCCEEEEeCCCCCCCCCCCHHHHHHHHHhCCCEEEEECCchhhcCCcchH-HHHhhCCCCEEEEEech
Confidence            9999752     36788899999999999999999999999999999999998765321111 11111111458889999


Q ss_pred             cccCCCC-ceEEEEEeccchhhhhccCCcccccccCcccccccCCCCCcccCCCCchhHHHHHHHHHhChHHHHHHHHHh
Q psy14299        164 KMLGAPL-QCSILLIKEKGLLHQANATAATYLFQQDKFYDVSFDTGDKSVQCGRKVDAFKLWLMWKARGNLGFRHFVDNA  242 (448)
Q Consensus       164 K~l~~P~-g~G~l~vr~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~g~~~~i~~~  242 (448)
                      |+++.|. .+|++++++ ++..........|                 +      ...+..++                 
T Consensus       231 K~~~~~G~r~G~~~~~~-~~~~~l~~~~~~~-----------------~------~~~~~~~a-----------------  269 (369)
T 3cq5_A          231 KAFDFAGGRLGYFVANP-AFIDAVMLVRLPY-----------------H------LSALSQAA-----------------  269 (369)
T ss_dssp             STTSCGGGCCEEEEECT-HHHHHHHTTSCTT-----------------C------SCHHHHHH-----------------
T ss_pred             HhcCCcccceEEEEeCH-HHHHHHHHcCCCC-----------------C------CCHHHHHH-----------------
Confidence            9997552 368888854 3333322111100                 0      00111111                 


Q ss_pred             hhhccCCCccchhhhhhhhhhhhhhhhhhhhhhhccccccccccCCCCCccccccchhhHHHHHHHHHhcCccHHHHHHH
Q psy14299        243 VDCSRGSMTFSTLLCFDLQGLLHQANATAATYLFQQDKFYDVSFDTGDKSVQCGRKVDAFKLWLMWKARGNLGFRHFVDN  322 (448)
Q Consensus       243 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~  322 (448)
                                                                                   +..+++.  .++++++.++
T Consensus       270 -------------------------------------------------------------~~~~l~~--~~~~~~~~~~  286 (369)
T 3cq5_A          270 -------------------------------------------------------------AIVALRH--SADTLGTVEK  286 (369)
T ss_dssp             -------------------------------------------------------------HHHHHHT--HHHHHTHHHH
T ss_pred             -------------------------------------------------------------HHHHhcC--HHHHHHHHHH
Confidence                                                                         1111221  1235567778


Q ss_pred             HHHHHHHHHHHhhcCCCeEEeccCCceeeEEEEeeccCCCccccchhhhhhhhhhhHHHHHHHHhCCcEEEEeeecCCcc
Q psy14299        323 AVDCSRYFLSQISQRPGFRLVIPEFQCTNICFWFIPVSLRDKVEDETWWSTLSKVAPRIKEKLVLGGTLMIGYQPLQHRN  402 (448)
Q Consensus       323 ~~~l~~~~~~~L~~~pg~~l~~~~~~~~~v~f~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~L~~~g~~~~~~~~~~g~~  402 (448)
                      ..++++++.+.|++. |+++.  ++..+.+.+.+ +  .+               ..++.+.|.++| +.+.+.   +  
T Consensus       287 ~~~~~~~l~~~L~~~-g~~~~--~~~~~~~~~~~-~--~~---------------~~~l~~~l~~~g-i~v~~~---~--  339 (369)
T 3cq5_A          287 LSVERVRVAARLEEL-GYAVV--PSESNFVFFGD-F--SD---------------QHAAWQAFLDRG-VLIRDV---G--  339 (369)
T ss_dssp             HHHHHHHHHHHHHHH-TCEEE--CCSSSEEEEEC-C--SS---------------HHHHHHHHHHTT-EECBCC---S--
T ss_pred             HHHHHHHHHHHHHhC-CCEEC--CCCCeEEEEEC-C--CC---------------HHHHHHHHHHCC-EEEEEC---C--
Confidence            888899999999885 88886  34445554433 1  11               136788888888 555443   2  


Q ss_pred             cccEEEEEecCCCCCCHHHHHHHHHHHHHHHH
Q psy14299        403 LHNFFRLVTTCHPASSRQDMDYAIDQIELRGA  434 (448)
Q Consensus       403 ~~~~lRis~~~~~~~t~edid~l~~al~~~~~  434 (448)
                      .++++|+++  +   +++|+++++++|+++.+
T Consensus       340 ~~~~iRis~--~---~~~~i~~~~~~l~~~~~  366 (369)
T 3cq5_A          340 IAGHLRTTI--G---VPEENDAFLDAAAEIIK  366 (369)
T ss_dssp             CTTEEEEEC--C---CHHHHHHHHHHHHHHHT
T ss_pred             CCCeEEEEe--C---CHHHHHHHHHHHHHHHh
Confidence            137899999  3   78999999999998753

>2o0r_A RV0858C (N-succinyldiaminopimelate aminotransfera; PLP-binding enzyme, lysine biosynthesis, aminotransferase, S genomics; HET: LLP; 2.00A {Mycobacterium tuberculosis}

Probab=99.85  E-value=1.5e-20  Score=190.97  Aligned_cols=285  Identities=12%  Similarity=0.039  Sum_probs=189.1

Q ss_pred             cEEEeCcHHHHHHHHHHHHHHhcCCcccccCCCCCCCeEEEecCCCchHHHHHHHHhCCCCCcEEEEecCCC---CCcCH
Q psy14299          4 KPFLLPGGSISNMYSICLARYRLDPDTKRKGLSHLPPLCMFTSEDSHYSMLKAAHWLGIGMDNVIRVKTNER---GQMIC   80 (448)
Q Consensus         4 ~g~~t~ggT~an~~al~~a~~~~~~~~~~~G~~~~~~~~Vl~~~~~H~s~~~~~~~~g~~~~~v~~v~~~~~---g~id~   80 (448)
                      .+++|+|||+++..++.++..              +++.|+++..+|.++...++..|.   +++.+|.+++   +.+|+
T Consensus        88 ~v~~t~g~~~al~~~~~~~~~--------------~gd~Vl~~~~~y~~~~~~~~~~g~---~~~~v~~~~~~~~~~~d~  150 (411)
T 2o0r_A           88 EVLVTVGATEAIAAAVLGLVE--------------PGSEVLLIEPFYDSYSPVVAMAGA---HRVTVPLVPDGRGFALDA  150 (411)
T ss_dssp             SEEEEEHHHHHHHHHHHHHCC--------------TTCEEEEEESCCTTHHHHHHHTTC---EEEEEECEEETTEEECCH
T ss_pred             eEEEeCCHHHHHHHHHHHhcC--------------CCCEEEEeCCCcHhHHHHHHHcCC---EEEEeeccccccCCCCCH
Confidence            689999999999988877633              567788999999999999998888   7888887653   57999


Q ss_pred             HHHHHHHHHhhhcCCCcEEEEEeccCCccccccC---HHHHHHHHHHcCCEEEEecccccccccccch-h-hhhcCCCCc
Q psy14299         81 SFLEQTIQTSLAEKKIPLFVNATAGTTVLGAFDP---LDEIATVCEKYDLWMHVDACWGGSLIFSEKY-S-FVLKGINRA  155 (448)
Q Consensus        81 e~Le~~l~~~~~~~~~~~lVv~~~~~t~tG~~~~---l~~I~~ia~~~g~~l~VD~A~~~~~~~~~~~-~-~~~~~~~~a  155 (448)
                      ++|++++++      ++++|++++++|++|.+.|   +++|.++|++||+++++|++|+.+....... . ..+......
T Consensus       151 ~~l~~~l~~------~~~~v~l~~~~nptG~~~~~~~l~~i~~~~~~~~~~li~De~~~~~~~~g~~~~~~~~~~~~~~~  224 (411)
T 2o0r_A          151 DALRRAVTP------RTRALIINSPHNPTGAVLSATELAAIAEIAVAANLVVITDEVYEHLVFDHARHLPLAGFDGMAER  224 (411)
T ss_dssp             HHHHHHCCT------TEEEEEEESSCTTTCCCCCHHHHHHHHHHHHHTTCEEEEECTTTTCBCTTCCCCCGGGSTTTGGG
T ss_pred             HHHHHhhcc------CceEEEEeCCCCCCCCCCCHHHHHHHHHHHHHcCCEEEEEccccccccCCCCCcChhhccCCCCC
Confidence            999999853      5789999999999999866   5999999999999999999998765421100 0 011111246


Q ss_pred             cEEEECCccccCCCCc--eEEEEEeccchhhhhccCCcccccccCcccccccCCCCCcccCCCCchhHHHHHHHHHhChH
Q psy14299        156 NSVSWNPHKMLGAPLQ--CSILLIKEKGLLHQANATAATYLFQQDKFYDVSFDTGDKSVQCGRKVDAFKLWLMWKARGNL  233 (448)
Q Consensus       156 D~~~~s~hK~l~~P~g--~G~l~vr~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~  233 (448)
                      |+++.++||+++ +.|  +|++++++ ++....... ..+..              +                       
T Consensus       225 ~i~~~s~sK~~~-~~G~r~G~~~~~~-~~~~~l~~~-~~~~~--------------~-----------------------  264 (411)
T 2o0r_A          225 TITISSAAKMFN-CTGWKIGWACGPA-ELIAGVRAA-KQYLS--------------Y-----------------------  264 (411)
T ss_dssp             EEEEEEHHHHTT-CTTTCEEEEECCH-HHHHHHHHH-HHHHT--------------S-----------------------
T ss_pred             EEEEeechhhcC-CccceEEEEeeCH-HHHHHHHHH-Hhhcc--------------C-----------------------
Confidence            899999999887 445  88887743 333322110 00000              0                       


Q ss_pred             HHHHHHHHhhhhccCCCccchhhhhhhhhhhhhhhhhhhhhhhccccccccccCCCCCccccccchhhHHHHHHHHHhcC
Q psy14299        234 GFRHFVDNAVDCSRGSMTFSTLLCFDLQGLLHQANATAATYLFQQDKFYDVSFDTGDKSVQCGRKVDAFKLWLMWKARGN  313 (448)
Q Consensus       234 g~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  313 (448)
                                                                                   +.+.+.+.++..+++.. .
T Consensus       265 -------------------------------------------------------------~~~~~~~~a~~~~l~~~-~  282 (411)
T 2o0r_A          265 -------------------------------------------------------------VGGAPFQPAVALALDTE-D  282 (411)
T ss_dssp             -------------------------------------------------------------CCCTTHHHHHHHHHHHC-H
T ss_pred             -------------------------------------------------------------CCChHHHHHHHHHHhCC-h
Confidence                                                                         00001111122223221 3


Q ss_pred             ccHHHHHHHHHHHHHHHHHHhhcCCCeEEeccCCceee-EEEEeecc-CCCccccchhhhhhhhhhhHHHHHHHH-hCCc
Q psy14299        314 LGFRHFVDNAVDCSRYFLSQISQRPGFRLVIPEFQCTN-ICFWFIPV-SLRDKVEDETWWSTLSKVAPRIKEKLV-LGGT  390 (448)
Q Consensus       314 ~G~~~~~~~~~~l~~~~~~~L~~~pg~~l~~~~~~~~~-v~f~~~~~-~~~~~~~~~~~~~~~~~~~~~i~~~L~-~~g~  390 (448)
                      ++++++.++..++++++.+.|+++ |++++  ++..+. +.+.+... +.+               ..++.+.|. ++| 
T Consensus       283 ~~~~~~~~~~~~~~~~l~~~L~~~-g~~~~--~~~~g~~~~~~~~~~~~~~---------------~~~~~~~l~~~~g-  343 (411)
T 2o0r_A          283 AWVAALRNSLRARRDRLAAGLTEI-GFAVH--DSYGTYFLCADPRPLGYDD---------------STEFCAALPEKVG-  343 (411)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHH-TCEEC--CCCBSSEEEEECGGGTCCC---------------HHHHHHHHHHHHS-
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHc-CCEec--CCCeeEEEEEecCCCCCCC---------------HHHHHHHHHHhCC-
Confidence            456677888889999999999988 88875  344443 34433210 011               236778776 568 


Q ss_pred             EEEEeeecC-Ccc----------cccEEEEEecCCCCCCHHHHHHHHHHHHHHHHHh
Q psy14299        391 LMIGYQPLQ-HRN----------LHNFFRLVTTCHPASSRQDMDYAIDQIELRGAEV  436 (448)
Q Consensus       391 ~~~~~~~~~-g~~----------~~~~lRis~~~~~~~t~edid~l~~al~~~~~~~  436 (448)
                      +.+.++... +..          .++++|+++.    ++++|++++++.|+++.++.
T Consensus       344 i~v~~g~~f~~~~~~~~~~~~~~~~~~iRis~~----~~~e~i~~~~~~l~~~~~~~  396 (411)
T 2o0r_A          344 VAAIPMSAFCDPAAGQASQQADVWNHLVRFTFC----KRDDTLDEAIRRLSVLAERP  396 (411)
T ss_dssp             EECEEGGGGSCCC--------CCGGGCEEEECC----SCHHHHHHHHHHHGGGGC--
T ss_pred             EEEcChhhhCCCccccccccccCCCCeEEEEec----CCHHHHHHHHHHHHHHHhcc
Confidence            444443221 111          2378999993    38999999999999876543

>1u08_A Hypothetical aminotransferase YBDL; alpha beta protein; HET: PLP; 2.35A {Escherichia coli} SCOP: c.67.1.1

Probab=99.85  E-value=4.9e-20  Score=185.42  Aligned_cols=279  Identities=10%  Similarity=-0.005  Sum_probs=187.1

Q ss_pred             cEEEeCcHHHHHHHHHHHHHHhcCCcccccCCCCCCCeEEEecCCCchHHHHHHHHhCCCCCcEEEEecCC-CCCcCHHH
Q psy14299          4 KPFLLPGGSISNMYSICLARYRLDPDTKRKGLSHLPPLCMFTSEDSHYSMLKAAHWLGIGMDNVIRVKTNE-RGQMICSF   82 (448)
Q Consensus         4 ~g~~t~ggT~an~~al~~a~~~~~~~~~~~G~~~~~~~~Vl~~~~~H~s~~~~~~~~g~~~~~v~~v~~~~-~g~id~e~   82 (448)
                      .+++|+|||+++..++.++..              +++.|+++...|+++...++..|.   +++.+|.++ ++.+|+++
T Consensus        93 ~v~~~~g~~~a~~~~~~~~~~--------------~gd~vl~~~p~~~~~~~~~~~~g~---~~~~v~~~~~~~~~d~~~  155 (386)
T 1u08_A           93 DITVTAGATEALYAAITALVR--------------NGDEVICFDPSYDSYAPAIALSGG---IVKRMALQPPHFRVDWQE  155 (386)
T ss_dssp             TEEEESSHHHHHHHHHHHHCC--------------TTCEEEEEESCCTTHHHHHHHTTC---EEEEEECCTTTCCCCHHH
T ss_pred             CEEEcCChHHHHHHHHHHhCC--------------CCCEEEEeCCCchhHHHHHHHcCC---EEEEeecCcccCcCCHHH
Confidence            689999999999888877532              566788899999999999999888   788999876 57899999


Q ss_pred             HHHHHHHhhhcCCCcEEEEEeccCCccccccC---HHHHHHHHHHcCCEEEEecccccccccccch-hh-hhcCCCCccE
Q psy14299         83 LEQTIQTSLAEKKIPLFVNATAGTTVLGAFDP---LDEIATVCEKYDLWMHVDACWGGSLIFSEKY-SF-VLKGINRANS  157 (448)
Q Consensus        83 Le~~l~~~~~~~~~~~lVv~~~~~t~tG~~~~---l~~I~~ia~~~g~~l~VD~A~~~~~~~~~~~-~~-~~~~~~~aD~  157 (448)
                      |++++++      ++++|++++++|++|.+.|   +++|.++|++||+++++|++|+......... .. .+.+....|+
T Consensus       156 l~~~l~~------~~~~v~l~~p~nptG~~~~~~~l~~i~~~~~~~~~~li~De~~~~~~~~g~~~~~~~~~~~~~~~~i  229 (386)
T 1u08_A          156 FAALLSE------RTRLVILNTPHNPSATVWQQADFAALWQAIAGHEIFVISDEVYEHINFSQQGHASVLAHPQLRERAV  229 (386)
T ss_dssp             HHHHCCT------TEEEEEEESSCTTTCCCCCHHHHHHHHHHHTTSCCEEEEECTTTTCBCCSSCCCCGGGSHHHHTTEE
T ss_pred             HHHhhcc------cCEEEEEeCCCCCCCccCCHHHHHHHHHHHHHcCcEEEEEccccccccCCCCCcChhcccCccCcEE
Confidence            9999843      5789999999999999875   6899999999999999999998744311100 00 0100113689


Q ss_pred             EEECCccccCCCCc--eEEEEEeccchhhhhccCCcccccccCcccccccCCCCCcccCCCCchhHHHHHHHHHhChHHH
Q psy14299        158 VSWNPHKMLGAPLQ--CSILLIKEKGLLHQANATAATYLFQQDKFYDVSFDTGDKSVQCGRKVDAFKLWLMWKARGNLGF  235 (448)
Q Consensus       158 ~~~s~hK~l~~P~g--~G~l~vr~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~g~  235 (448)
                      ++.++||+++. .|  +|++++++ ++........ .+..              +                         
T Consensus       230 ~~~s~sK~~~~-~G~r~G~~~~~~-~~~~~l~~~~-~~~~--------------~-------------------------  267 (386)
T 1u08_A          230 AVSSFGKTYHM-TGWKVGYCVAPA-PISAEIRKVH-QYLT--------------F-------------------------  267 (386)
T ss_dssp             EEEEHHHHTTC-GGGCCEEEECCH-HHHHHHHHHH-HHHT--------------S-------------------------
T ss_pred             EEecchhhcCC-cccceEEEEcCH-HHHHHHHHHH-Hhhc--------------c-------------------------
Confidence            99999999874 45  78887754 3332221100 0000              0                         


Q ss_pred             HHHHHHhhhhccCCCccchhhhhhhhhhhhhhhhhhhhhhhccccccccccCCCCCccccccchhhHHHHHHHHHhcCcc
Q psy14299        236 RHFVDNAVDCSRGSMTFSTLLCFDLQGLLHQANATAATYLFQQDKFYDVSFDTGDKSVQCGRKVDAFKLWLMWKARGNLG  315 (448)
Q Consensus       236 ~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G  315 (448)
                                                                                 +.+.+.+..+..+++.. .++
T Consensus       268 -----------------------------------------------------------~~~~~~~~a~~~~l~~~-~~~  287 (386)
T 1u08_A          268 -----------------------------------------------------------SVNTPAQLALADMLRAE-PEH  287 (386)
T ss_dssp             -----------------------------------------------------------SCCHHHHHHHHHHHHHC-THH
T ss_pred             -----------------------------------------------------------CCChHHHHHHHHHHhCC-cHH
Confidence                                                                       00011112222333332 456


Q ss_pred             HHHHHHHHHHHHHHHHHHhhcCCCeEEeccCCcee-eEEEEeeccC--CCccccchhhhhhhhhhhHHHHHHHH-hCCcE
Q psy14299        316 FRHFVDNAVDCSRYFLSQISQRPGFRLVIPEFQCT-NICFWFIPVS--LRDKVEDETWWSTLSKVAPRIKEKLV-LGGTL  391 (448)
Q Consensus       316 ~~~~~~~~~~l~~~~~~~L~~~pg~~l~~~~~~~~-~v~f~~~~~~--~~~~~~~~~~~~~~~~~~~~i~~~L~-~~g~~  391 (448)
                      ++++.++..++++++.+.|+++ |+++. . +..+ .+.+.+ +..  .+               ..++.+.|. ++| +
T Consensus       288 ~~~~~~~~~~~~~~l~~~L~~~-g~~~~-~-~~~g~~~~~~~-~~~~~~~---------------~~~~~~~l~~~~g-i  347 (386)
T 1u08_A          288 YLALPDFYRQKRDILVNALNES-RLEIL-P-CEGTYFLLVDY-SAVSTLD---------------DVEFCQWLTQEHG-V  347 (386)
T ss_dssp             HHTHHHHHHHHHHHHHHHTTSS-SCEEC-C-CCBSSEEEEEC-TTTCCSC---------------HHHHHHHHHHHSC-E
T ss_pred             HHHHHHHHHHHHHHHHHHHHHC-CCeec-C-CCceEEEEEec-CCCCCCC---------------HHHHHHHHHHhCC-E
Confidence            7778888999999999999998 89875 3 3433 333433 211  11               236778777 568 5


Q ss_pred             EEEeee-cCC-cccccEEEEEecCCCCCCHHHHHHHHHHHHH
Q psy14299        392 MIGYQP-LQH-RNLHNFFRLVTTCHPASSRQDMDYAIDQIEL  431 (448)
Q Consensus       392 ~~~~~~-~~g-~~~~~~lRis~~~~~~~t~edid~l~~al~~  431 (448)
                      .+.++. +.. ...++++|+++.    ++++|++++++.|++
T Consensus       348 ~v~~g~~f~~~~~~~~~iRis~~----~~~~~i~~~~~~l~~  385 (386)
T 1u08_A          348 AAIPLSVFCADPFPHKLIRLCFA----KKESTLLAAAERLRQ  385 (386)
T ss_dssp             ECEEGGGGCSSCCCSCEEEEECC----SCHHHHHHHHHHHTT
T ss_pred             EEeCchHhCCCCCCCCEEEEEEc----CCHHHHHHHHHHHhh
Confidence            554432 211 012379999993    389999999998864

>1o69_A Aminotransferase; structural genomics, unknown function; HET: X04; 1.84A {Campylobacter jejuni} SCOP: c.67.1.4 PDB: 1o62_A 1o61_A*

Probab=99.85  E-value=1.8e-19  Score=182.39  Aligned_cols=156  Identities=17%  Similarity=0.212  Sum_probs=123.7

Q ss_pred             cEEEeCcHHHHHHHHHHHHHHhcCCcccccCCCCCCCeEEEecCCCchHHHHHHHHhCCCCCcEEEEecCCCCCcCHHHH
Q psy14299          4 KPFLLPGGSISNMYSICLARYRLDPDTKRKGLSHLPPLCMFTSEDSHYSMLKAAHWLGIGMDNVIRVKTNERGQMICSFL   83 (448)
Q Consensus         4 ~g~~t~ggT~an~~al~~a~~~~~~~~~~~G~~~~~~~~Vl~~~~~H~s~~~~~~~~g~~~~~v~~v~~~~~g~id~e~L   83 (448)
                      .+++|+|||+++.+++.++..             .+++.|+++..+|.++..+++..|.   +++.++.++++.+|+++|
T Consensus        49 ~v~~~~ggt~al~~~~~~l~~-------------~~gd~Vl~~~~~~~~~~~~~~~~g~---~~~~v~~~~~~~~d~~~l  112 (394)
T 1o69_A           49 NALALNSATAALHLALRVAGV-------------KQDDIVLASSFTFIASVAPICYLKA---KPVFIDCDETYNIDVDLL  112 (394)
T ss_dssp             EEEEESCHHHHHHHHHHHTTC-------------CTTCEEEEESSSCGGGTHHHHHTTC---EEEEECBCTTSSBCHHHH
T ss_pred             cEEEeCCHHHHHHHHHHHcCC-------------CCCCEEEECCCccHHHHHHHHHcCC---EEEEEEeCCCCCcCHHHH
Confidence            478999999999988877521             2567899999999999999999888   789999988889999999


Q ss_pred             HHHHHHhhhcCCCcEEEEEeccCCccccccCHHHHHHHHHHcCCEEEEecccccccccccchhhhhcCCCCccEEEECCc
Q psy14299         84 EQTIQTSLAEKKIPLFVNATAGTTVLGAFDPLDEIATVCEKYDLWMHVDACWGGSLIFSEKYSFVLKGINRANSVSWNPH  163 (448)
Q Consensus        84 e~~l~~~~~~~~~~~lVv~~~~~t~tG~~~~l~~I~~ia~~~g~~l~VD~A~~~~~~~~~~~~~~~~~~~~aD~~~~s~h  163 (448)
                      ++++++.   +.++++|++++   ++|...|+++|.++|++||+++++|++|+.+..+.+..   ...+..+|+++++.|
T Consensus       113 ~~~i~~~---~~~~~~v~~~~---~~G~~~~l~~i~~l~~~~~~~li~Dea~~~g~~~~~~~---~~~~~~~~~~s~s~~  183 (394)
T 1o69_A          113 KLAIKEC---EKKPKALILTH---LYGNAAKMDEIVEICKENDIVLIEDAAEALGSFYKNKA---LGTFGEFGVYSYNGN  183 (394)
T ss_dssp             HHHHHHC---SSCCCEEEEEC---GGGCCCCHHHHHHHHHHTTCEEEEECTTCTTCEETTEE---TTSSSSEEEEECCTT
T ss_pred             HHHHhcc---cCCceEEEEEC---CCCChhhHHHHHHHHHHcCCEEEEECcCcccceeCCcc---cccccCcEEEEEeCC
Confidence            9999752   11467888875   79999999999999999999999999999655433221   111224789999999


Q ss_pred             cccCCCCceEEEEEeccchhhh
Q psy14299        164 KMLGAPLQCSILLIKEKGLLHQ  185 (448)
Q Consensus       164 K~l~~P~g~G~l~vr~~~~~~~  185 (448)
                      |+++ |.++|+++++++++...
T Consensus       184 K~l~-~~~~G~~~~~~~~l~~~  204 (394)
T 1o69_A          184 KIIT-TSGGGMLIGKNKEKIEK  204 (394)
T ss_dssp             SSSC-CSSCEEEEESCHHHHHH
T ss_pred             ccCC-CCCceEEEECCHHHHHH
Confidence            9876 67899998865554433

>2x5d_A Probable aminotransferase; HET: LLP PLP; 2.25A {Pseudomonas aeruginosa}

Probab=99.85  E-value=6.4e-20  Score=186.47  Aligned_cols=290  Identities=9%  Similarity=-0.007  Sum_probs=191.8

Q ss_pred             cEEEeCcHHHHHHHHHHHHHHhcCCcccccCCCCCCCeEEEecCCCchHHHHHHHHhCCCCCcEEEEecCCC-C-CcCHH
Q psy14299          4 KPFLLPGGSISNMYSICLARYRLDPDTKRKGLSHLPPLCMFTSEDSHYSMLKAAHWLGIGMDNVIRVKTNER-G-QMICS   81 (448)
Q Consensus         4 ~g~~t~ggT~an~~al~~a~~~~~~~~~~~G~~~~~~~~Vl~~~~~H~s~~~~~~~~g~~~~~v~~v~~~~~-g-~id~e   81 (448)
                      .+++|+|||+++..++.+...              +++.|+++...|.++...++..|.   +++.+|.+++ + .+|++
T Consensus       101 ~v~~t~g~~~a~~~~~~~~~~--------------~gd~Vl~~~p~~~~~~~~~~~~g~---~~~~~~~~~~~~~~~d~~  163 (412)
T 2x5d_A          101 EAIVTIGSKEGLAHLMLATLD--------------HGDTILVPNPSYPIHIYGAVIAGA---QVRSVPLVPGIDFFNELE  163 (412)
T ss_dssp             SEEEESCHHHHHHHHHHHHCC--------------TTCEEEEEESCCHHHHHHHHHHTC---EEEEEECSTTSCHHHHHH
T ss_pred             CEEEcCChHHHHHHHHHHhCC--------------CCCEEEEcCCCchhHHHHHHHcCC---EEEEeecCCccCCCCCHH
Confidence            689999999999988877533              567788999999999999999998   7888998764 3 47889


Q ss_pred             HHHHHHHHhhhcCCCcEEEEEeccCCccccccC---HHHHHHHHHHcCCEEEEecccccccccccch-h-hhhcCCCCcc
Q psy14299         82 FLEQTIQTSLAEKKIPLFVNATAGTTVLGAFDP---LDEIATVCEKYDLWMHVDACWGGSLIFSEKY-S-FVLKGINRAN  156 (448)
Q Consensus        82 ~Le~~l~~~~~~~~~~~lVv~~~~~t~tG~~~~---l~~I~~ia~~~g~~l~VD~A~~~~~~~~~~~-~-~~~~~~~~aD  156 (448)
                      +|++++++      ++++|++++++|++|.+.|   +++|.++|++||+++++|++|+.+....... . ..+.+....|
T Consensus       164 ~l~~~i~~------~~~~v~l~~p~nptG~~~~~~~l~~l~~~~~~~~~~li~De~~~~~~~~g~~~~~~~~~~~~~~~~  237 (412)
T 2x5d_A          164 RAIRESIP------KPRMMILGFPSNPTAQCVELDFFERVVALAKQYDVMVVHDLAYADIVYDGWKAPSIMQVPGAKDIA  237 (412)
T ss_dssp             HHHHTEES------CCSEEEEESSCTTTCCCCCHHHHHHHHHHHHHHTCEEEEECTTTTCBCTTCCCCCGGGSTTGGGTE
T ss_pred             HHHHhccc------CceEEEECCCCCCCCCcCCHHHHHHHHHHHHHcCCEEEEeccccccccCCCCCCChhhccCccCcE
Confidence            99888753      4778888999999998876   6889999999999999999998865421100 0 0011112467


Q ss_pred             EEEECCccccCCCC-ceEEEEEeccchhhhhccCCcccccccCcccccccCCCCCcccCCCCchhHHHHHHHHHhChHHH
Q psy14299        157 SVSWNPHKMLGAPL-QCSILLIKEKGLLHQANATAATYLFQQDKFYDVSFDTGDKSVQCGRKVDAFKLWLMWKARGNLGF  235 (448)
Q Consensus       157 ~~~~s~hK~l~~P~-g~G~l~vr~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~g~  235 (448)
                      +++.++||+++.|. .+|++++++ ++........ .+..              +                         
T Consensus       238 i~~~s~sK~~~~~G~r~G~~~~~~-~~~~~l~~~~-~~~~--------------~-------------------------  276 (412)
T 2x5d_A          238 VEFFTLSKSYNMAGWRIGFMVGNP-ELVSALARIK-SYHD--------------Y-------------------------  276 (412)
T ss_dssp             EEEEECC-CCSCTTSCCEEEEECH-HHHHHHHHHH-HHHC--------------C-------------------------
T ss_pred             EEEecCccccCCcccceEEEEcCH-HHHHHHHHHH-hhhc--------------c-------------------------
Confidence            99999999997443 478888744 3333221100 0000              0                         


Q ss_pred             HHHHHHhhhhccCCCccchhhhhhhhhhhhhhhhhhhhhhhccccccccccCCCCCccccccchhhHHHHHHHHHhcCcc
Q psy14299        236 RHFVDNAVDCSRGSMTFSTLLCFDLQGLLHQANATAATYLFQQDKFYDVSFDTGDKSVQCGRKVDAFKLWLMWKARGNLG  315 (448)
Q Consensus       236 ~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G  315 (448)
                                                                                 +.+.+.+..+..+++. +.++
T Consensus       277 -----------------------------------------------------------~~~~~~~~a~~~~l~~-~~~~  296 (412)
T 2x5d_A          277 -----------------------------------------------------------GTFTPLQVAAIAALEG-DQQC  296 (412)
T ss_dssp             -----------------------------------------------------------CCCHHHHHHHHHHHHS-CSHH
T ss_pred             -----------------------------------------------------------CCCHHHHHHHHHHHhC-CHHH
Confidence                                                                       0001111122222332 2345


Q ss_pred             HHHHHHHHHHHHHHHHHHhhcCCCeEEeccCCceeeEEEEeeccCCCccccchhhhhhhhhhhHHHHHHHHh-CCcEEEE
Q psy14299        316 FRHFVDNAVDCSRYFLSQISQRPGFRLVIPEFQCTNICFWFIPVSLRDKVEDETWWSTLSKVAPRIKEKLVL-GGTLMIG  394 (448)
Q Consensus       316 ~~~~~~~~~~l~~~~~~~L~~~pg~~l~~~~~~~~~v~f~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~L~~-~g~~~~~  394 (448)
                      ++++.++..++++++.+.|+++ |++++  ++..+.+.+...|.++..            ....++.+.|.+ +| +.+.
T Consensus       297 ~~~~~~~~~~~~~~l~~~L~~~-g~~~~--~~~~g~~~~~~~~~~~~~------------~~~~~~~~~l~~~~g-i~v~  360 (412)
T 2x5d_A          297 VRDIARQYQQRRDVLVKGLREA-GWMVE--NPKASMYVWAKIPEPYAH------------LGSLEFAKKLLQDAK-VSVS  360 (412)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHH-TCCCC--CCSBSSEEEEECCTTTGG------------GCHHHHHHHHHHHHC-EECE
T ss_pred             HHHHHHHHHHHHHHHHHHHHHC-CCEec--CCCeeeEEEEEcCCccCC------------CCHHHHHHHHHHHCC-EEEe
Confidence            7778888899999999999988 88764  344454433222222200            012367888865 58 5555


Q ss_pred             eeecCCcccccEEEEEecCCCCCCHHHHHHHHHHHHHHHHHhH
Q psy14299        395 YQPLQHRNLHNFFRLVTTCHPASSRQDMDYAIDQIELRGAEVD  437 (448)
Q Consensus       395 ~~~~~g~~~~~~lRis~~~~~~~t~edid~l~~al~~~~~~~~  437 (448)
                      ++...+...++++|+++.  .  ++++++++++.|+++.+++.
T Consensus       361 ~g~~f~~~~~~~iRis~~--~--~~~~l~~~l~~l~~~l~~~~  399 (412)
T 2x5d_A          361 PGIGFGDYGDDHVRFALI--E--NRDRLRQAVRGIKAMFRADG  399 (412)
T ss_dssp             EGGGGCGGGTTEEEEECC--S--CHHHHHHHHHHHHHHHHHTT
T ss_pred             CchhhCCCCCCeEEEEec--C--CHHHHHHHHHHHHHHHHhcC
Confidence            443322222479999994  3  89999999999999987654

>3ecd_A Serine hydroxymethyltransferase 2; ssgcid, decode, bupsa00008A, one-carbon metabolism, pyridoxa phosphate, structural genomics; 1.60A {Burkholderia pseudomallei}

Probab=99.85  E-value=8.6e-20  Score=185.40  Aligned_cols=289  Identities=13%  Similarity=0.095  Sum_probs=176.8

Q ss_pred             EEeCcHHHHHHHHHHHHHHhcCCcccccCCCCCCCeEEEecCCCchH-HHHHHH--HhCCCCCcEEEEecC-CCCCcCHH
Q psy14299          6 FLLPGGSISNMYSICLARYRLDPDTKRKGLSHLPPLCMFTSEDSHYS-MLKAAH--WLGIGMDNVIRVKTN-ERGQMICS   81 (448)
Q Consensus         6 ~~t~ggT~an~~al~~a~~~~~~~~~~~G~~~~~~~~Vl~~~~~H~s-~~~~~~--~~g~~~~~v~~v~~~-~~g~id~e   81 (448)
                      ++++|||+++..++.++..              +++.|+++..+|.+ +...+.  ..|.+. .+..++.+ +++.+|++
T Consensus        98 v~~~~Gs~a~~~al~~~~~--------------~gd~Vi~~~~~~~~~~~~~~~~~~~g~~~-~~~~~~~~~~~~~~d~~  162 (425)
T 3ecd_A           98 VQPHSGAQANGAVMLALAK--------------PGDTVLGMSLDAGGHLTHGAKPALSGKWF-NALQYGVSRDTMLIDYD  162 (425)
T ss_dssp             CCCSSHHHHHHHHHHHHCC--------------TTCEEEEECC------------------C-EEEEECCCTTTSSCCHH
T ss_pred             eecCchHHHHHHHHHHccC--------------CCCEEEEcccccccceecchhhhhcccce-eeeecCCCcccCccCHH
Confidence            4599999999888776632              66789999999988 323333  334321 34455555 34789999


Q ss_pred             HHHHHHHHhhhcCCCcEEEEEeccCCccccccCHHHHHHHHHHcCCEEEEecccccccccccchhhhhcCCCCccEEEEC
Q psy14299         82 FLEQTIQTSLAEKKIPLFVNATAGTTVLGAFDPLDEIATVCEKYDLWMHVDACWGGSLIFSEKYSFVLKGINRANSVSWN  161 (448)
Q Consensus        82 ~Le~~l~~~~~~~~~~~lVv~~~~~t~tG~~~~l~~I~~ia~~~g~~l~VD~A~~~~~~~~~~~~~~~~~~~~aD~~~~s  161 (448)
                      +|++++.+.     ++++|+++++.+  |...++++|.++|++||+++++|++|+.+..........   +..+|+++.+
T Consensus       163 ~l~~~i~~~-----~~~~v~~~~~~~--~~~~~l~~i~~l~~~~~~~li~De~~~~g~~~~~~~~~~---~~~~di~~~s  232 (425)
T 3ecd_A          163 QVEALAQQH-----KPSLIIAGFSAY--PRKLDFARFRAIADSVGAKLMVDMAHIAGVIAAGRHANP---VEHAHVVTST  232 (425)
T ss_dssp             HHHHHHHHH-----CCSEEEEECSCC--CSCCCHHHHHHHHHHHTCEEEEECGGGHHHHHTTSSCCG---GGTCSEEEEE
T ss_pred             HHHHHHhhc-----CCcEEEEccccC--CCcCCHHHHHHHHHHcCCEEEEECcChHhhhhcccccCc---hhcCcEEEec
Confidence            999999752     467888876554  789999999999999999999999988776543322111   1236899999


Q ss_pred             CccccCCCCceEEEEEeccchhhhhccCCcccccccCcccccccCCCCCcccCCCCchhHHHHHHHHHhChHHHHHHHHH
Q psy14299        162 PHKMLGAPLQCSILLIKEKGLLHQANATAATYLFQQDKFYDVSFDTGDKSVQCGRKVDAFKLWLMWKARGNLGFRHFVDN  241 (448)
Q Consensus       162 ~hK~l~~P~g~G~l~vr~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~g~~~~i~~  241 (448)
                      +||++++|. .|+++.+++.+......    ......              ..+ ..                       
T Consensus       233 ~sK~l~g~~-~g~~~~~~~~~~~~~~~----~~~~~~--------------~~~-~~-----------------------  269 (425)
T 3ecd_A          233 THKTLRGPR-GGFVLTNDEEIAKKINS----AVFPGL--------------QGG-PL-----------------------  269 (425)
T ss_dssp             SSGGGCCCS-CEEEEESCHHHHHHHHH----HHC-------------------C-CC-----------------------
T ss_pred             CCcccCCCC-cEEEEeCCHHHHHHHHh----hhCccc--------------cCC-cc-----------------------
Confidence            999998886 47777654433322211    000000              000 00                       


Q ss_pred             hhhhccCCCccchhhhhhhhhhhhhhhhhhhhhhhccccccccccCCCCCccccccchhhHHHHHHHHHhcCccHHHHHH
Q psy14299        242 AVDCSRGSMTFSTLLCFDLQGLLHQANATAATYLFQQDKFYDVSFDTGDKSVQCGRKVDAFKLWLMWKARGNLGFRHFVD  321 (448)
Q Consensus       242 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~  321 (448)
                                                                              ...+.++..++.....++++++.+
T Consensus       270 --------------------------------------------------------~~~~~a~~~a~~~~~~~~~~~~~~  293 (425)
T 3ecd_A          270 --------------------------------------------------------MHVIAGKAVAFGEALTDDFKTYID  293 (425)
T ss_dssp             --------------------------------------------------------HHHHHHHHHHHHHHTSHHHHHHHH
T ss_pred             --------------------------------------------------------HHHHHHHHHHHHHHHHHhHHHHHH
Confidence                                                                    001112223344444566778888


Q ss_pred             HHHHHHHHHHHHhhcCCCeEEeccC-CceeeEEEEeeccCCCccccchhhhhhhhhhhHHHHHHHHhCCcEEEEeeecCC
Q psy14299        322 NAVDCSRYFLSQISQRPGFRLVIPE-FQCTNICFWFIPVSLRDKVEDETWWSTLSKVAPRIKEKLVLGGTLMIGYQPLQH  400 (448)
Q Consensus       322 ~~~~l~~~~~~~L~~~pg~~l~~~~-~~~~~v~f~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~L~~~g~~~~~~~~~~g  400 (448)
                      +..++++++.+.|.+. |++++ .+ .....+.+.+.+.+..               ...+.+.|.++| +.+......+
T Consensus       294 ~~~~~~~~l~~~L~~~-g~~~~-~~~~~~~~~~~~~~~~~~~---------------~~~~~~~l~~~g-i~v~~~~~p~  355 (425)
T 3ecd_A          294 RVLANAQALGDVLKAG-GVDLV-TGGTDNHLLLVDLRPKGLK---------------GAQVEQALERAG-ITCNKNGIPF  355 (425)
T ss_dssp             HHHHHHHHHHHHHHHT-TCEEG-GGSCSSSEEEEECGGGTCC---------------HHHHHHHHHHTT-EECEECCCTT
T ss_pred             HHHHHHHHHHHHHHhC-CCeec-cCCCCceEEEEEeCCCCCC---------------HHHHHHHHHHcC-CEecccccCC
Confidence            9999999999999995 89886 33 2444555544322221               236777888888 4444221111


Q ss_pred             ----cccccEEEEEecC--CCCCCHHHHHHHHHHHHHHHHHh
Q psy14299        401 ----RNLHNFFRLVTTC--HPASSRQDMDYAIDQIELRGAEV  436 (448)
Q Consensus       401 ----~~~~~~lRis~~~--~~~~t~edid~l~~al~~~~~~~  436 (448)
                          ...++.+|+++..  +...+++|+++++++|+++.++.
T Consensus       356 ~~~~~~~~~~iRi~~~~~~~~~~~~e~i~~~~~~l~~~l~~~  397 (425)
T 3ecd_A          356 DPEKPTITSGIRLGTPAGTTRGFGAAEFREVGRLILEVFEAL  397 (425)
T ss_dssp             CSSCTTTCSEEEEESHHHHHTTCCHHHHHHHHHHHHHHHHHH
T ss_pred             CCCCCCCccceeccchhheeccCCHHHHHHHHHHHHHHHhcc
Confidence                1123589999520  23445999999999999988765

>2dou_A Probable N-succinyldiaminopimelate aminotransfera; PLP-dependent enzyme, structural genomics, NPPSFA; HET: EPE; 2.30A {Thermus thermophilus}

Probab=99.85  E-value=1.5e-19  Score=181.24  Aligned_cols=280  Identities=13%  Similarity=0.035  Sum_probs=185.4

Q ss_pred             cEEEeCcHHHHHHHHHHHHHHhcCCcccccCCCCCCCeEEEecCCCchHHHHHHHHhCCCCCcEEEEecCCCCCcCHHHH
Q psy14299          4 KPFLLPGGSISNMYSICLARYRLDPDTKRKGLSHLPPLCMFTSEDSHYSMLKAAHWLGIGMDNVIRVKTNERGQMICSFL   83 (448)
Q Consensus         4 ~g~~t~ggT~an~~al~~a~~~~~~~~~~~G~~~~~~~~Vl~~~~~H~s~~~~~~~~g~~~~~v~~v~~~~~g~id~e~L   83 (448)
                      ..++|+|||+++..++.+...              +++.|+++...|.++...++..|.   +++.+|.+++..+|+++|
T Consensus        89 ~v~~~~g~~~a~~~~~~~l~~--------------~gd~vl~~~p~y~~~~~~~~~~g~---~~~~~~~~~~~~~d~~~l  151 (376)
T 2dou_A           89 EALALIGSQEGLAHLLLALTE--------------PEDLLLLPEVAYPSYFGAARVASL---RTFLIPLREDGLADLKAV  151 (376)
T ss_dssp             SEEEESSHHHHHHHHHHHHCC--------------TTCEEEEESSCCHHHHHHHHHTTC---EEEEECBCTTSSBCGGGS
T ss_pred             cEEEcCCcHHHHHHHHHHhcC--------------CCCEEEECCCCcHhHHHHHHHcCC---EEEEeeCCCCCCCCHHHH
Confidence            689999999999888876533              566788899999999999999888   788888844557899999


Q ss_pred             HHHHHHhhhcCCCcEEEEEeccCCccccccC---HHHHHHHHHHcCCEEEEecccccccccccchh-hhhcCCCCccEEE
Q psy14299         84 EQTIQTSLAEKKIPLFVNATAGTTVLGAFDP---LDEIATVCEKYDLWMHVDACWGGSLIFSEKYS-FVLKGINRANSVS  159 (448)
Q Consensus        84 e~~l~~~~~~~~~~~lVv~~~~~t~tG~~~~---l~~I~~ia~~~g~~l~VD~A~~~~~~~~~~~~-~~~~~~~~aD~~~  159 (448)
                      ++++.+      ++++|++++++|++|.+.|   +++|.++|++||+++++|++|+.+........ ....+....++++
T Consensus       152 ~~~l~~------~~~~v~l~~p~nptG~~~~~~~l~~l~~~~~~~~~~li~De~~~~~~~~~~~~~~~~~~~~~~~~i~~  225 (376)
T 2dou_A          152 PEGVWR------EAKVLLLNYPNNPTGAVADWGYFEEALGLARKHGLWLIHDNPYVDQVYEGEAPSPLALPGAKERVVEL  225 (376)
T ss_dssp             CHHHHH------HEEEEEECSSCTTTCCCCCHHHHHHHHHHHHHTTCEEEEECTTGGGBSSSCCCCGGGSTTGGGTEEEE
T ss_pred             HHhhcc------CceEEEECCCCCCcCccCCHHHHHHHHHHHHHcCCEEEEEccchhcccCCCCCChhhcCCCCCcEEEE
Confidence            999964      3789999999999999876   68899999999999999999987543211000 0010111346888


Q ss_pred             ECCccccCCCC-ceEEEEEeccchhhhhccCCcccccccCcccccccCCCCCcccCCCCchhHHHHHHHHHhChHHHHHH
Q psy14299        160 WNPHKMLGAPL-QCSILLIKEKGLLHQANATAATYLFQQDKFYDVSFDTGDKSVQCGRKVDAFKLWLMWKARGNLGFRHF  238 (448)
Q Consensus       160 ~s~hK~l~~P~-g~G~l~vr~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~g~~~~  238 (448)
                      .+++|+++.|. .+|+++.++ ++..........+-.                                           
T Consensus       226 ~s~sK~~~~~G~r~G~~~~~~-~~~~~l~~~~~~~~~-------------------------------------------  261 (376)
T 2dou_A          226 FSLSKSYNLAGFRLGFALGSE-EALARLERVKGVIDF-------------------------------------------  261 (376)
T ss_dssp             EEHHHHHTCGGGCCEEEEECH-HHHHHHHHHHHHHCC-------------------------------------------
T ss_pred             ecchhhcCChhheeEEEecCH-HHHHHHHHHHHhccc-------------------------------------------
Confidence            89999997543 468877643 333322110000000                                           


Q ss_pred             HHHhhhhccCCCccchhhhhhhhhhhhhhhhhhhhhhhccccccccccCCCCCccccccchhhHHHHHHHHHhcCccHHH
Q psy14299        239 VDNAVDCSRGSMTFSTLLCFDLQGLLHQANATAATYLFQQDKFYDVSFDTGDKSVQCGRKVDAFKLWLMWKARGNLGFRH  318 (448)
Q Consensus       239 i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~  318 (448)
                                                                              +.+.+.+..+..+++. ...++++
T Consensus       262 --------------------------------------------------------~~~~~~~~a~~~~l~~-~~~~~~~  284 (376)
T 2dou_A          262 --------------------------------------------------------NQYAGVLRMGVEALKT-PKEVVRG  284 (376)
T ss_dssp             --------------------------------------------------------CSCHHHHHHHHHHHTS-CHHHHHH
T ss_pred             --------------------------------------------------------CCCHHHHHHHHHHHhC-cHHHHHH
Confidence                                                                    0000011111122221 1235667


Q ss_pred             HHHHHHHHHHHHHHHhhcCCCeEEeccCCceeeEE-EEeeccCCCccccchhhhhhhhhhhHHHHHHHHhCCcEEEEeee
Q psy14299        319 FVDNAVDCSRYFLSQISQRPGFRLVIPEFQCTNIC-FWFIPVSLRDKVEDETWWSTLSKVAPRIKEKLVLGGTLMIGYQP  397 (448)
Q Consensus       319 ~~~~~~~l~~~~~~~L~~~pg~~l~~~~~~~~~v~-f~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~L~~~g~~~~~~~~  397 (448)
                      +.++..++++++.+.|+++  +++.  ++..+.+. +.+ |.+.+               ..++.+.|.++| +.+.++.
T Consensus       285 ~~~~~~~~~~~l~~~L~~~--~~~~--~~~~~~~~~~~~-~~~~~---------------~~~~~~~l~~~g-i~v~~g~  343 (376)
T 2dou_A          285 YARVYRERALGMAEALKGV--LSLL--PPRATMYLWGRL-PEGVD---------------DLEFGLRLVERG-VALAPGR  343 (376)
T ss_dssp             HHHHHHHHHHHHHHHHTTT--SEEC--CCCBSSEEEEEC-CTTCC---------------HHHHHHHHHHTT-EECEEGG
T ss_pred             HHHHHHHHHHHHHHHHHHh--cCcc--CCCeeEEEEEEC-CCCCC---------------HHHHHHHHHHCC-EEEcCch
Confidence            7788889999999999987  7764  34445444 333 22221               236888999998 5555443


Q ss_pred             cCCcccccEEEEEecCCCCCCHHHHHHHHHHHHHH
Q psy14299        398 LQHRNLHNFFRLVTTCHPASSRQDMDYAIDQIELR  432 (448)
Q Consensus       398 ~~g~~~~~~lRis~~~~~~~t~edid~l~~al~~~  432 (448)
                      ..+...++++|+++.  .  ++++++++++.|+++
T Consensus       344 ~f~~~~~~~~Ris~~--~--~~~~i~~~l~~l~~~  374 (376)
T 2dou_A          344 GFGPGGKGFVRIALV--R--PLEELLEAAKRIREA  374 (376)
T ss_dssp             GGCGGGTTEEEEECC--S--CHHHHHHHHHHHHHT
T ss_pred             hhCCCCCCeEEEEec--C--CHHHHHHHHHHHHHH
Confidence            322212479999994  2  789999999998865

>2zyj_A Alpha-aminodipate aminotransferase; alpha-aminoadipate aminotransferase; HET: PGU; 1.67A {Thermus thermophilus} PDB: 2egy_A* 2dtv_A* 2zg5_A* 2zp7_A* 2z1y_A* 3cbf_A*

Probab=99.85  E-value=2.2e-19  Score=181.41  Aligned_cols=289  Identities=11%  Similarity=0.053  Sum_probs=186.8

Q ss_pred             cEEEeCcHHHHHHHHHHHHHHhcCCcccccCCCCCCCeEEEecCCCchHHHHHHHHhCCCCCcEEEEecCCCCCcCHHHH
Q psy14299          4 KPFLLPGGSISNMYSICLARYRLDPDTKRKGLSHLPPLCMFTSEDSHYSMLKAAHWLGIGMDNVIRVKTNERGQMICSFL   83 (448)
Q Consensus         4 ~g~~t~ggT~an~~al~~a~~~~~~~~~~~G~~~~~~~~Vl~~~~~H~s~~~~~~~~g~~~~~v~~v~~~~~g~id~e~L   83 (448)
                      .+++|+|+|+++..++.+...              +++.|+++...|.++...++..|.   +++.+|.++++ +|+++|
T Consensus        93 ~v~~~~g~~~al~~~~~~~~~--------------~gd~Vl~~~p~y~~~~~~~~~~g~---~~~~~~~~~~~-~d~~~l  154 (397)
T 2zyj_A           93 EVLITTGSQQALDLVGKVFLD--------------EGSPVLLEAPSYMGAIQAFRLQGP---RFLTVPAGEEG-PDLDAL  154 (397)
T ss_dssp             GEEEESHHHHHHHHHHHHHCC--------------TTCEEEEEESCCHHHHHHHHTTCC---EEEEEEEETTE-ECHHHH
T ss_pred             hEEEeccHHHHHHHHHHHhCC--------------CCCEEEEeCCCcHHHHHHHHHcCC---EEEecCcCCCC-CCHHHH
Confidence            578999999999888776533              556788888999999999998887   78888887665 999999


Q ss_pred             HHHHHHhhhcCCCcEEE-EEeccCCccccccCHH---HHHHHHHHcCCEEEEeccccccccccc----chhhhhcCCCCc
Q psy14299         84 EQTIQTSLAEKKIPLFV-NATAGTTVLGAFDPLD---EIATVCEKYDLWMHVDACWGGSLIFSE----KYSFVLKGINRA  155 (448)
Q Consensus        84 e~~l~~~~~~~~~~~lV-v~~~~~t~tG~~~~l~---~I~~ia~~~g~~l~VD~A~~~~~~~~~----~~~~~~~~~~~a  155 (448)
                      ++++++     .++++| ++.+++|++|.+.|.+   +|.++|++||+++++|++|+.+.....    ............
T Consensus       155 ~~~l~~-----~~~~~v~~~~~~~nptG~~~~~~~l~~l~~~~~~~~~~li~De~~~~~~~~g~~~~~~~~~~~~~~~~~  229 (397)
T 2zyj_A          155 EEVLKR-----ERPRFLYLIPSFQNPTGGLTPLPARKRLLQMVMERGLVVVEDDAYRELYFGEARLPSLFELAREAGYPG  229 (397)
T ss_dssp             HHHHHH-----CCCSCEEECCBSCTTTCCBCCHHHHHHHHHHHHHHTCCEEEECTTTTCBCSSCCCCCHHHHHHHHTCCC
T ss_pred             HHHHhh-----cCCeEEEECCCCcCCCCCcCCHHHHHHHHHHHHHcCCEEEEeCCcccccCCCCCCCchhhhCcccCCCe
Confidence            999975     135676 5688999999988754   899999999999999999987553211    011100000012


Q ss_pred             cEEEECCccccCCC-CceEEEEEeccchhhhhccCCcccccccCcccccccCCCCCcccCCCCchhHHHHHHHHHhChHH
Q psy14299        156 NSVSWNPHKMLGAP-LQCSILLIKEKGLLHQANATAATYLFQQDKFYDVSFDTGDKSVQCGRKVDAFKLWLMWKARGNLG  234 (448)
Q Consensus       156 D~~~~s~hK~l~~P-~g~G~l~vr~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~g  234 (448)
                      .+++.++||+++ | ..+|++++++ ++..........+..                                   +   
T Consensus       230 ~i~~~s~sK~~~-~G~r~G~~~~~~-~~~~~l~~~~~~~~~-----------------------------------~---  269 (397)
T 2zyj_A          230 VIYLGSFSKVLS-PGLRVAFAVAHP-EALQKLVQAKQGADL-----------------------------------H---  269 (397)
T ss_dssp             EEEEEESTTTTC-GGGCCEEEECCH-HHHHHHHHHHHHHHS-----------------------------------S---
T ss_pred             EEEEeccccccc-ccceeEEEecCH-HHHHHHHHHHHhhcC-----------------------------------C---
Confidence            377889999998 5 4578888753 333222110000000                                   0   


Q ss_pred             HHHHHHHhhhhccCCCccchhhhhhhhhhhhhhhhhhhhhhhccccccccccCCCCCccccccchhhHHHHHHHHHhcCc
Q psy14299        235 FRHFVDNAVDCSRGSMTFSTLLCFDLQGLLHQANATAATYLFQQDKFYDVSFDTGDKSVQCGRKVDAFKLWLMWKARGNL  314 (448)
Q Consensus       235 ~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  314 (448)
                                                                                   .+.+.+..+..+++....+
T Consensus       270 -------------------------------------------------------------~~~~~~~a~~~~l~~~~~~  288 (397)
T 2zyj_A          270 -------------------------------------------------------------TPMLNQMLVHELLKEGFSE  288 (397)
T ss_dssp             -------------------------------------------------------------CCHHHHHHHHHHHTTTHHH
T ss_pred             -------------------------------------------------------------CCHHHHHHHHHHHHhCCHH
Confidence                                                                         0000011111111110002


Q ss_pred             cHHHHHHHHHHHHHHHHHHhhc-CC-CeEEeccCCceeeEEEEeeccCCCccccchhhhhhhhhhhHHHHHHHHhCCcEE
Q psy14299        315 GFRHFVDNAVDCSRYFLSQISQ-RP-GFRLVIPEFQCTNICFWFIPVSLRDKVEDETWWSTLSKVAPRIKEKLVLGGTLM  392 (448)
Q Consensus       315 G~~~~~~~~~~l~~~~~~~L~~-~p-g~~l~~~~~~~~~v~f~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~L~~~g~~~  392 (448)
                      .++++.++..++++++.+.|++ +| |++++ .+.....+.+.+ +.+.+               ..++.+.|.++| +.
T Consensus       289 ~~~~~~~~~~~~~~~l~~~L~~~~~~g~~~~-~~~~g~~~~~~~-~~~~~---------------~~~~~~~l~~~g-i~  350 (397)
T 2zyj_A          289 RLERVRRVYREKAQAMLHALDREVPKEVRYT-RPKGGMFVWMEL-PKGLS---------------AEGLFRRALEEN-VA  350 (397)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHSCTTSEEC-CCSBSSEEEEEC-STTCC---------------HHHHHHHHHHTT-EE
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHCCCCeEEc-cCCccEEEEEEc-CCCCC---------------HHHHHHHHHHCC-CE
Confidence            4566777788889999999987 57 68875 333333333433 22221               237888999998 55


Q ss_pred             EEeeecCCc--ccccEEEEEecCCCCCCHHHHHHHHHHHHHHHHHhH
Q psy14299        393 IGYQPLQHR--NLHNFFRLVTTCHPASSRQDMDYAIDQIELRGAEVD  437 (448)
Q Consensus       393 ~~~~~~~g~--~~~~~lRis~~~~~~~t~edid~l~~al~~~~~~~~  437 (448)
                      +.++...+.  ..++++|+++.  .. +++|++++++.|+++.+++.
T Consensus       351 v~~g~~f~~~~~~~~~iRis~~--~~-~~~~i~~~~~~l~~~l~~~~  394 (397)
T 2zyj_A          351 FVPGGPFFANGGGENTLRLSYA--TL-DREGIAEGVRRLGRALKGLL  394 (397)
T ss_dssp             EEESGGGCTTSCCTTEEEEECS--SS-CHHHHHHHHHHHHHHHHHHH
T ss_pred             EechHHhcCCCCCCCeEEEEcC--CC-CHHHHHHHHHHHHHHHHHHH
Confidence            554332211  12379999995  33 89999999999999887653

>3n0l_A Serine hydroxymethyltransferase; alpha beta class, 3-layer(ABA) sandwich, CSGI transferase, structural genomics; HET: MSE; 1.80A {Campylobacter jejuni} SCOP: c.67.1.0

Probab=99.84  E-value=6.9e-20  Score=185.78  Aligned_cols=289  Identities=13%  Similarity=0.097  Sum_probs=178.7

Q ss_pred             EEeCcHHHHHHHHHHHHHHhcCCcccccCCCCCCCeEEEecCCCchHHHH---HHHHhCCCCCcEEEEecCCCCCcCHHH
Q psy14299          6 FLLPGGSISNMYSICLARYRLDPDTKRKGLSHLPPLCMFTSEDSHYSMLK---AAHWLGIGMDNVIRVKTNERGQMICSF   82 (448)
Q Consensus         6 ~~t~ggT~an~~al~~a~~~~~~~~~~~G~~~~~~~~Vl~~~~~H~s~~~---~~~~~g~~~~~v~~v~~~~~g~id~e~   82 (448)
                      +++++||+++..++.++.+              +++.|+++..+|.++..   .....|.+. .+..++.++++.+|+++
T Consensus        91 i~~~sGt~a~~~~~~~~~~--------------~gd~vl~~~~~~~~~~~~~~~~~~~g~~~-~~~~~~~~~~~~~d~~~  155 (417)
T 3n0l_A           91 VQPNSGSQANQGVYAALIN--------------PGDKILGMDLSHGGHLTHGAKVSSSGKMY-ESCFYGVELDGRIDYEK  155 (417)
T ss_dssp             CCCSSHHHHHHHHHHHHSC--------------TTCEEEEECC----------------CCS-EEEEECCCTTSSCCHHH
T ss_pred             eEeccHHHHHHHHHHHhcC--------------CCCEEEecccccccccchhhhhhhhccee-eeEeccCCCCCCcCHHH
Confidence            4556669999988877633              66788999999987655   333444422 35666777778899999


Q ss_pred             HHHHHHHhhhcCCCcEEEEEeccCCccccccCHHHHHHHHHHcCCEEEEecccccccccccchhhhhcCCCCccEEEECC
Q psy14299         83 LEQTIQTSLAEKKIPLFVNATAGTTVLGAFDPLDEIATVCEKYDLWMHVDACWGGSLIFSEKYSFVLKGINRANSVSWNP  162 (448)
Q Consensus        83 Le~~l~~~~~~~~~~~lVv~~~~~t~tG~~~~l~~I~~ia~~~g~~l~VD~A~~~~~~~~~~~~~~~~~~~~aD~~~~s~  162 (448)
                      |++++++.     ++++|+++++++  |...|+++|.++|++||+++++|++|+.+..........   +..+|+++.++
T Consensus       156 l~~~i~~~-----~~~~v~~~~~~~--G~~~~l~~i~~l~~~~~~~li~Dea~~~g~~~~~~~~~~---~~~~di~~~s~  225 (417)
T 3n0l_A          156 VREIAKKE-----KPKLIVCGASAY--ARVIDFAKFREIADEIGAYLFADIAHIAGLVVAGEHPSP---FPYAHVVSSTT  225 (417)
T ss_dssp             HHHHHHHH-----CCSEEEECCSSC--CSCCCHHHHHHHHHHHTCEEEEECTTTHHHHHTTSSCCC---TTTCSEEEEES
T ss_pred             HHHHHHhc-----CCeEEEECCccc--CccCCHHHHHHHHHHcCCEEEEECccchhhhhcccCCCc---cccceEEEeeC
Confidence            99999742     477888777664  999999999999999999999999987666533221111   12469999999


Q ss_pred             ccccCCCCceEEEEEeccchhhhhccCCcccccccCcccccccCCCCCcccCCCCchhHHHHHHHHHhChHHHHHHHHHh
Q psy14299        163 HKMLGAPLQCSILLIKEKGLLHQANATAATYLFQQDKFYDVSFDTGDKSVQCGRKVDAFKLWLMWKARGNLGFRHFVDNA  242 (448)
Q Consensus       163 hK~l~~P~g~G~l~vr~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~g~~~~i~~~  242 (448)
                      ||++++|.+ |+++.+++.+............                  ..+..                         
T Consensus       226 sK~l~g~~~-G~~~~~~~~~~~~~~~~~~~~~------------------~~~~~-------------------------  261 (417)
T 3n0l_A          226 HKTLRGPRG-GIIMTNDEELAKKINSAIFPGI------------------QGGPL-------------------------  261 (417)
T ss_dssp             STTTCSCSC-EEEEESCHHHHHHHHHHHTTTT------------------CSSCC-------------------------
T ss_pred             ccccCCCCe-eEEEECCHHHHHHHhhhhCCcc------------------cCCcH-------------------------
Confidence            999988875 8877764444333211000000                  00000                         


Q ss_pred             hhhccCCCccchhhhhhhhhhhhhhhhhhhhhhhccccccccccCCCCCccccccchhhHHHHHHHHHhcCccHHHHHHH
Q psy14299        243 VDCSRGSMTFSTLLCFDLQGLLHQANATAATYLFQQDKFYDVSFDTGDKSVQCGRKVDAFKLWLMWKARGNLGFRHFVDN  322 (448)
Q Consensus       243 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~  322 (448)
                                                                             ...+.++..++......+++++.++
T Consensus       262 -------------------------------------------------------~~~~aa~~~a~~~~~~~~~~~~~~~  286 (417)
T 3n0l_A          262 -------------------------------------------------------MHVIAAKAVGFKFNLSDEWKVYAKQ  286 (417)
T ss_dssp             -------------------------------------------------------HHHHHHHHHHHHHHTSHHHHHHHHH
T ss_pred             -------------------------------------------------------HHHHHHHHHHHHHHHhhhHHHHHHH
Confidence                                                                   0001112233334344567788888


Q ss_pred             HHHHHHHHHHHhhcCCCeEEeccC-CceeeEEEEeeccCCCccccchhhhhhhhhhhHHHHHHHHhCCcEEEEeeecCC-
Q psy14299        323 AVDCSRYFLSQISQRPGFRLVIPE-FQCTNICFWFIPVSLRDKVEDETWWSTLSKVAPRIKEKLVLGGTLMIGYQPLQH-  400 (448)
Q Consensus       323 ~~~l~~~~~~~L~~~pg~~l~~~~-~~~~~v~f~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~L~~~g~~~~~~~~~~g-  400 (448)
                      ..++++++.+.|.+ +|++++ .. ...+.+.+.+.+.++.               ...+.+.|.++| +.+.+..... 
T Consensus       287 ~~~~~~~l~~~L~~-~g~~~~-~~~~~~~~~~~~~~~~~~~---------------~~~~~~~l~~~g-i~v~~~~~~~~  348 (417)
T 3n0l_A          287 VRTNAQVLANVLMD-RKFKLV-SDGTDNHLVLMSFLDREFS---------------GKDADLALGNAG-ITANKNTVPGE  348 (417)
T ss_dssp             HHHHHHHHHHHHHH-TTCEEG-GGSCSSSEEEEECTTSSSC---------------HHHHHHHHHHTT-EECEECCCTTC
T ss_pred             HHHHHHHHHHHHHh-CCceec-cCCCCceEEEEEcccCCCC---------------HHHHHHHHHHcC-eEEeccccCCC
Confidence            99999999999999 599986 32 2334444443332222               236777888888 4444322111 


Q ss_pred             ---cccccEEEEEecC--CCCCCHHHHHHHHHHHHHHHHHh
Q psy14299        401 ---RNLHNFFRLVTTC--HPASSRQDMDYAIDQIELRGAEV  436 (448)
Q Consensus       401 ---~~~~~~lRis~~~--~~~~t~edid~l~~al~~~~~~~  436 (448)
                         ......+|+++..  ....+++|+++++++|+++.++.
T Consensus       349 ~~~~~~~~~~ri~~~~~~~~~~~~~~i~~~~~~l~~~l~~~  389 (417)
T 3n0l_A          349 IRSPFITSGLRLGTPALTARGFKEKEMEIVSNYIADILDDV  389 (417)
T ss_dssp             CSCTTTCSEEEEECHHHHHTTCCHHHHHHHHHHHHHHHHTT
T ss_pred             CcccCCCCeeEecCHHHhhCCCCHHHHHHHHHHHHHHHhcc
Confidence               1112579999731  12357899999999999988654

>1mdo_A ARNB aminotransferase; type 1 aminotransferase fold; HET: MSE PMP; 1.70A {Salmonella typhimurium} SCOP: c.67.1.4 PDB: 1mdx_A* 1mdz_A*

Probab=99.84  E-value=8.1e-20  Score=183.98  Aligned_cols=149  Identities=15%  Similarity=0.143  Sum_probs=116.9

Q ss_pred             cEEEeCcHHHHHHHHHHHHHHhcCCcccccCCCCCCCeEEEecCCCchHHHHHHHHhCCCCCcEEEEecCCC-CCcCHHH
Q psy14299          4 KPFLLPGGSISNMYSICLARYRLDPDTKRKGLSHLPPLCMFTSEDSHYSMLKAAHWLGIGMDNVIRVKTNER-GQMICSF   82 (448)
Q Consensus         4 ~g~~t~ggT~an~~al~~a~~~~~~~~~~~G~~~~~~~~Vl~~~~~H~s~~~~~~~~g~~~~~v~~v~~~~~-g~id~e~   82 (448)
                      .+++|+|||+++..++.++..             .+++.|+++..+|.++..+++..|.   +++.++.+++ +.+|+++
T Consensus        56 ~~~~~~~gt~al~~~~~~~~~-------------~~gd~Vl~~~~~~~~~~~~~~~~g~---~~~~v~~~~~~~~~d~~~  119 (393)
T 1mdo_A           56 YAVAVSSATAGMHIALMALGI-------------GEGDEVITPSMTWVSTLNMIVLLGA---NPVMVDVDRDTLMVTPEH  119 (393)
T ss_dssp             EEEEESCHHHHHHHHHHHTTC-------------CTTCEEEEESSSCHHHHHHHHHTTC---EEEEECBCTTTCCBCHHH
T ss_pred             cEEEecChHHHHHHHHHHcCC-------------CCCCEEEeCCCccHhHHHHHHHCCC---EEEEEeccCCcCCCCHHH
Confidence            478999999999988876521             1567899999999999999999898   7889998765 6899999


Q ss_pred             HHHHHHHhhhcCCCcEEEEEeccCCccccccCHHHHHHHHHHcCCEEEEecccccccccccchhhhhcCCCCccEEEECC
Q psy14299         83 LEQTIQTSLAEKKIPLFVNATAGTTVLGAFDPLDEIATVCEKYDLWMHVDACWGGSLIFSEKYSFVLKGINRANSVSWNP  162 (448)
Q Consensus        83 Le~~l~~~~~~~~~~~lVv~~~~~t~tG~~~~l~~I~~ia~~~g~~l~VD~A~~~~~~~~~~~~~~~~~~~~aD~~~~s~  162 (448)
                      |++++++      ++++|+++   +++|.+.|+++|.++|++||+++++|++|+.+..+... .  + +.  .|+++.|+
T Consensus       120 l~~~l~~------~~~~v~~~---~~~G~~~~~~~i~~l~~~~~~~li~D~a~~~g~~~~~~-~--~-~~--~d~~~~S~  184 (393)
T 1mdo_A          120 IEAAITP------QTKAIIPV---HYAGAPADLDAIYALGERYGIPVIEDAAHATGTSYKGR-H--I-GA--RGTAIFSF  184 (393)
T ss_dssp             HHHHCCT------TEEEECCB---CGGGCCCCHHHHHHHHHHHTCCBCEECTTCTTCEETTE-E--T-TS--SSEEEEEC
T ss_pred             HHHhcCC------CceEEEEe---CCCCCcCCHHHHHHHHHHcCCeEEEECccccCCeECCe-e--c-CC--CCeEEEeC
Confidence            9999854      46777765   37999999999999999999999999999976543211 1  1 11  68999999


Q ss_pred             c--cccCCCCceEEEEEeccchhh
Q psy14299        163 H--KMLGAPLQCSILLIKEKGLLH  184 (448)
Q Consensus       163 h--K~l~~P~g~G~l~vr~~~~~~  184 (448)
                      |  |+++++ ..|+++.+++++..
T Consensus       185 ~k~K~l~~~-~~g~~~~~~~~~~~  207 (393)
T 1mdo_A          185 HAIKNITCA-EGGIVVTDNPQFAD  207 (393)
T ss_dssp             CTTSSSCSS-SCEEEEESCHHHHH
T ss_pred             CCCCccccc-cceEEEeCCHHHHH
Confidence            9  999764 46666665444433

>1vp4_A Aminotransferase, putative; structural genomics, joint center for structural genomics, J protein structure initiative, PSI; HET: MSE PLP; 1.82A {Thermotoga maritima} SCOP: c.67.1.1

Probab=99.84  E-value=1.6e-19  Score=184.56  Aligned_cols=294  Identities=12%  Similarity=0.025  Sum_probs=190.1

Q ss_pred             cEEEeCcHHHHHHHHHHHHHHhcCCcccccCCCCCCCeEEEecCCCchHHHHHHHHhCCCCCcEEEEecCCCCCcCHHHH
Q psy14299          4 KPFLLPGGSISNMYSICLARYRLDPDTKRKGLSHLPPLCMFTSEDSHYSMLKAAHWLGIGMDNVIRVKTNERGQMICSFL   83 (448)
Q Consensus         4 ~g~~t~ggT~an~~al~~a~~~~~~~~~~~G~~~~~~~~Vl~~~~~H~s~~~~~~~~g~~~~~v~~v~~~~~g~id~e~L   83 (448)
                      ..++|+|||+++..++.+...              +++.|+++...|.++...++..|.   +++.+|.++++ +|+++|
T Consensus       111 ~v~~t~G~~~al~~~~~~l~~--------------~gd~Vl~~~p~y~~~~~~~~~~g~---~~~~v~~~~~~-~d~~~l  172 (425)
T 1vp4_A          111 NLIFTVGSQQALDLIGKLFLD--------------DESYCVLDDPAYLGAINAFRQYLA---NFVVVPLEDDG-MDLNVL  172 (425)
T ss_dssp             GEEEEEHHHHHHHHHHHHHCC--------------TTCEEEEEESCCHHHHHHHHTTTC---EEEEEEEETTE-ECHHHH
T ss_pred             cEEEeccHHHHHHHHHHHhCC--------------CCCEEEEeCCCcHHHHHHHHHcCC---EEEEeccCCCC-CCHHHH
Confidence            578999999999888776533              567788899999999999998888   78888887765 999999


Q ss_pred             HHHHHHhhhc--CCCcEEE-EEeccCCccccccC---HHHHHHHHHHcCCEEEEeccccccccccc---chhhhhcCCCC
Q psy14299         84 EQTIQTSLAE--KKIPLFV-NATAGTTVLGAFDP---LDEIATVCEKYDLWMHVDACWGGSLIFSE---KYSFVLKGINR  154 (448)
Q Consensus        84 e~~l~~~~~~--~~~~~lV-v~~~~~t~tG~~~~---l~~I~~ia~~~g~~l~VD~A~~~~~~~~~---~~~~~~~~~~~  154 (448)
                      ++++++..++  +.++++| ++++++|+||.+.|   +++|.++|++||+++++|++|+.+.....   .... +. ...
T Consensus       173 ~~~l~~~~~~~~~~~~~~v~~~~~~~nptG~~~~~~~l~~l~~~~~~~~~~li~De~~~~~~~~g~~~~~~~~-~~-~~~  250 (425)
T 1vp4_A          173 ERKLSEFDKNGKIKQVKFIYVVSNFHNPAGVTTSLEKRKALVEIAEKYDLFIVEDDPYGALRYEGETVDPIFK-IG-GPE  250 (425)
T ss_dssp             HHHHHHHHHTTCGGGEEEEEEECSSCTTTCCCCCHHHHHHHHHHHHHTTCEEEEECSSTTCBCSSCCCCCHHH-HH-CTT
T ss_pred             HHHHHhhhhcccCCCceEEEECCCCCCCCCCcCCHHHHHHHHHHHHHcCCEEEEECCCccccCCCCCCcCHHH-hC-CCC
Confidence            9999763211  1247787 57899999998876   67899999999999999999987543111   1110 11 112


Q ss_pred             ccEEEECCccccCCCC-ceEEEEEeccchhhhhccCCcccccccCcccccccCCCCCcccCCCCchhHHHHHHHHHhChH
Q psy14299        155 ANSVSWNPHKMLGAPL-QCSILLIKEKGLLHQANATAATYLFQQDKFYDVSFDTGDKSVQCGRKVDAFKLWLMWKARGNL  233 (448)
Q Consensus       155 aD~~~~s~hK~l~~P~-g~G~l~vr~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~  233 (448)
                      .++++.+++|+++ |. .+|++++++ ++..........+-.                                      
T Consensus       251 ~~i~~~s~sK~~~-~G~r~G~~~~~~-~~~~~l~~~~~~~~~--------------------------------------  290 (425)
T 1vp4_A          251 RVVLLNTFSKVLA-PGLRIGMVAGSK-EFIRKIVQAKQSADL--------------------------------------  290 (425)
T ss_dssp             TEEEEEESTTTTC-GGGCEEEEECCH-HHHHHHHHHHHHHHS--------------------------------------
T ss_pred             CEEEEeccccccc-cccceEEEeeCH-HHHHHHHHHhhhhcC--------------------------------------
Confidence            4688889999998 42 368887753 333322110000000                                      


Q ss_pred             HHHHHHHHhhhhccCCCccchhhhhhhhhhhhhhhhhhhhhhhccccccccccCCCCCccccccchhhHHHHHHHHHh-c
Q psy14299        234 GFRHFVDNAVDCSRGSMTFSTLLCFDLQGLLHQANATAATYLFQQDKFYDVSFDTGDKSVQCGRKVDAFKLWLMWKAR-G  312 (448)
Q Consensus       234 g~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~  312 (448)
                                                                                   +.+.+.+..+..+++.. -
T Consensus       291 -------------------------------------------------------------~~~~~~~~a~~~~l~~~~~  309 (425)
T 1vp4_A          291 -------------------------------------------------------------CSPAITHRLAARYLERYDL  309 (425)
T ss_dssp             -------------------------------------------------------------SCCHHHHHHHHHHHHHSCH
T ss_pred             -------------------------------------------------------------CCCHHHHHHHHHHHhcCCH
Confidence                                                                         00001111111222221 0


Q ss_pred             CccHHHHHHHHHHHHHHHHHHhhcC-C---CeEEeccCCceeeEEEEeeccCCCccccchhhhhhhhhhhHHHHHHHHhC
Q psy14299        313 NLGFRHFVDNAVDCSRYFLSQISQR-P---GFRLVIPEFQCTNICFWFIPVSLRDKVEDETWWSTLSKVAPRIKEKLVLG  388 (448)
Q Consensus       313 ~~G~~~~~~~~~~l~~~~~~~L~~~-p---g~~l~~~~~~~~~v~f~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~L~~~  388 (448)
                      ...++++.++..++++++.+.|+++ |   |++++ .+.....+.+.+ |.+.+               ..++.+.|.++
T Consensus       310 ~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~g~~~~-~~~~g~~~~~~~-~~~~~---------------~~~l~~~l~~~  372 (425)
T 1vp4_A          310 LEQLKPTIELYRRKRTVMLNALEEYFSDIPGVKWV-KSEGGLFIWLTL-PEGFD---------------TWEMFEYAKRK  372 (425)
T ss_dssp             HHHTHHHHHHHHHHHHHHHHHHHHHSTTSTTCEEC-CCSBSSEEEEEC-CTTCC---------------TTTTHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhCCCCCceEEe-cCCccEEEEEEc-CCCCC---------------HHHHHHHHHHC
Confidence            2345667777888899999999874 5   68875 333333334433 32221               12577888888


Q ss_pred             CcEEEEeeecCCc--ccccEEEEEecCCCCCCHHHHHHHHHHHHHHHHHhHHh
Q psy14299        389 GTLMIGYQPLQHR--NLHNFFRLVTTCHPASSRQDMDYAIDQIELRGAEVDLE  439 (448)
Q Consensus       389 g~~~~~~~~~~g~--~~~~~lRis~~~~~~~t~edid~l~~al~~~~~~~~~~  439 (448)
                      | +.+.++...+.  ..++++|+++.  . .+++|+++++++|+++.+++.++
T Consensus       373 g-i~v~~g~~f~~~~~~~~~iRis~~--~-~~~e~i~~~l~~l~~~l~~~~~~  421 (425)
T 1vp4_A          373 K-VFYVPGRVFKVYDEPSPSMRLSFC--L-PPDEKIVEGIKRLREVVLEYGKE  421 (425)
T ss_dssp             T-EECEEGGGGCTTCCCCSEEEEECS--S-SCHHHHHHHHHHHHHHHHHHHHH
T ss_pred             C-CEEECchhhcCCCCCCCeEEEEeC--C-CCHHHHHHHHHHHHHHHHHHHhh
Confidence            8 55554432211  12379999995  3 38999999999999998876544

>3gbx_A Serine hydroxymethyltransferase; structural genomics, IDP01011, serine hydroxymethyltransfera salmonella typhimurium.; HET: MSE; 1.80A {Salmonella typhimurium} SCOP: c.67.1.4 PDB: 1dfo_A* 3g8m_A* 1eqb_A*

Probab=99.84  E-value=9.1e-20  Score=184.92  Aligned_cols=284  Identities=13%  Similarity=0.129  Sum_probs=178.2

Q ss_pred             EEeCcHHHHHHHHHHHHHHhcCCcccccCCCCCCCeEEEecCCCchHHHH-HH--HHhCCCCCcEEEEecCCCCCcCHHH
Q psy14299          6 FLLPGGSISNMYSICLARYRLDPDTKRKGLSHLPPLCMFTSEDSHYSMLK-AA--HWLGIGMDNVIRVKTNERGQMICSF   82 (448)
Q Consensus         6 ~~t~ggT~an~~al~~a~~~~~~~~~~~G~~~~~~~~Vl~~~~~H~s~~~-~~--~~~g~~~~~v~~v~~~~~g~id~e~   82 (448)
                      +++++||++|..++.+...              +++.|+++..+|.+... +.  ...|.+. ....++.+.++.+|+++
T Consensus        96 v~~~sGs~a~~~a~~~~~~--------------~gd~v~~~~~~~~~~~~~~~~~~~~g~~~-~~~~~~~~~~~~~d~~~  160 (420)
T 3gbx_A           96 VQPHSGSQANFAVYTALLQ--------------PGDTVLGMNLAQGGHLTHGSPVNFSGKLY-NIVPYGIDESGKIDYDE  160 (420)
T ss_dssp             CCCSSHHHHHHHHHHHHCC--------------TTCEEEEEEEC------------CHHHHS-EEEEEEECTTCSCCHHH
T ss_pred             eEecCcHHHHHHHHHHhcC--------------CCCEEEecchhhcceeccchhhhhcccce-eEEeccCCccCCcCHHH
Confidence            4467779998888766533              66788889899988442 21  2222211 35566777788999999


Q ss_pred             HHHHHHHhhhcCCCcEEEEEeccCCccccccCHHHHHHHHHHcCCEEEEecccccccccccchhhhhcCCCCccEEEECC
Q psy14299         83 LEQTIQTSLAEKKIPLFVNATAGTTVLGAFDPLDEIATVCEKYDLWMHVDACWGGSLIFSEKYSFVLKGINRANSVSWNP  162 (448)
Q Consensus        83 Le~~l~~~~~~~~~~~lVv~~~~~t~tG~~~~l~~I~~ia~~~g~~l~VD~A~~~~~~~~~~~~~~~~~~~~aD~~~~s~  162 (448)
                      |++++++.     ++++|+++++++  |...|+++|.++|++||+++++|++|+.+.........   .+..+|+++.++
T Consensus       161 l~~~i~~~-----~~~~v~~~~~~~--~~~~~l~~l~~l~~~~~~~li~De~~~~~~~~~~~~~~---~~~~~di~~~s~  230 (420)
T 3gbx_A          161 MAKLAKEH-----KPKMIIGGFSAY--SGVVDWAKMREIADSIGAYLFVDMAHVAGLIAAGVYPN---PVPHAHVVTTTT  230 (420)
T ss_dssp             HHHHHHHH-----CCSEEEECCTTC--CSCCCHHHHHHHHHHTTCEEEEECTTTHHHHHTTSSCC---STTTSSEEEEES
T ss_pred             HHHHHHhc-----CCeEEEEecCcc--CCccCHHHHHHHHHHcCCEEEEECCcchhceecccCCc---ccccCCEEEeec
Confidence            99999762     467888876555  56889999999999999999999998876553222111   122479999999


Q ss_pred             ccccCCCCceEEEEEecc--chhhhhccCCcccccccCcccccccCCCCCcccCCCCchhHHHHHHHHHhChHHHHHHHH
Q psy14299        163 HKMLGAPLQCSILLIKEK--GLLHQANATAATYLFQQDKFYDVSFDTGDKSVQCGRKVDAFKLWLMWKARGNLGFRHFVD  240 (448)
Q Consensus       163 hK~l~~P~g~G~l~vr~~--~~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~g~~~~i~  240 (448)
                      ||++++|.| |+++.++.  .+......    +.....              ..+ .                       
T Consensus       231 sK~~~g~~g-g~~~~~~~~~~~~~~~~~----~~~~~~--------------~~~-~-----------------------  267 (420)
T 3gbx_A          231 HKTLAGPRG-GLILAKGGDEELYKKLNS----AVFPSA--------------QGG-P-----------------------  267 (420)
T ss_dssp             SGGGCSCSC-EEEEESSCCHHHHHHHHH----HHC------------------CC-C-----------------------
T ss_pred             ccCCCCCCc-eEEEEcCCcHHHHHHhhh----hcCCCC--------------CCC-c-----------------------
Confidence            999988886 77666541  22222110    000000              000 0                       


Q ss_pred             HhhhhccCCCccchhhhhhhhhhhhhhhhhhhhhhhccccccccccCCCCCccccccchhhHHHHHHHHHhcCccHHHHH
Q psy14299        241 NAVDCSRGSMTFSTLLCFDLQGLLHQANATAATYLFQQDKFYDVSFDTGDKSVQCGRKVDAFKLWLMWKARGNLGFRHFV  320 (448)
Q Consensus       241 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~  320 (448)
                                                                              ....+.++..++.....++++++.
T Consensus       268 --------------------------------------------------------~~~~~~a~~~a~~~~~~~~~~~~~  291 (420)
T 3gbx_A          268 --------------------------------------------------------LMHVIAGKAVALKEAMEPEFKVYQ  291 (420)
T ss_dssp             --------------------------------------------------------CHHHHHHHHHHHHHTTSHHHHHHH
T ss_pred             --------------------------------------------------------chhHHHHHHHHHHHHHhHhHHHHH
Confidence                                                                    001112223334444456778888


Q ss_pred             HHHHHHHHHHHHHhhcCCCeEEeccC-CceeeEEEEeeccCCCccccchhhhhhhhhhhHHHHHHHHhCCcEEEEe----
Q psy14299        321 DNAVDCSRYFLSQISQRPGFRLVIPE-FQCTNICFWFIPVSLRDKVEDETWWSTLSKVAPRIKEKLVLGGTLMIGY----  395 (448)
Q Consensus       321 ~~~~~l~~~~~~~L~~~pg~~l~~~~-~~~~~v~f~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~L~~~g~~~~~~----  395 (448)
                      ++..++++++.+.|.+. |++++ .+ ...+.+.+.+.+.+..               ...+.+.|.++| +.+.+    
T Consensus       292 ~~~~~~~~~l~~~L~~~-g~~~~-~~~~~~~~~~~~~~~~~~~---------------~~~~~~~l~~~g-i~v~~~~~~  353 (420)
T 3gbx_A          292 QQVAKNAKAMVEVFLNR-GYKVV-SGGTENHLFLLDLVDKNLT---------------GKEADAALGRAN-ITVNKNSVP  353 (420)
T ss_dssp             HHHHHHHHHHHHHHHHT-TCEEG-GGSCSSSEEEEECGGGTCC---------------HHHHHHHHHHTT-EECEEECCT
T ss_pred             HHHHHHHHHHHHHHHhc-CCeec-cCCCCCeEEEEEcCCCCCC---------------HHHHHHHHHHCC-cEeccccCC
Confidence            99999999999999985 99986 32 3344555544322221               236777888888 44444    


Q ss_pred             ---eecCCcccccEEEEEecCCCC----CCHHHHHHHHHHHHHHHHHh
Q psy14299        396 ---QPLQHRNLHNFFRLVTTCHPA----SSRQDMDYAIDQIELRGAEV  436 (448)
Q Consensus       396 ---~~~~g~~~~~~lRis~~~~~~----~t~edid~l~~al~~~~~~~  436 (448)
                         ....+.   ..+|+++.  ..    .+++|+++++++|+++.++.
T Consensus       354 ~~~~~~~~~---~~iRi~~~--~~~~~~~~~~~i~~~~~~l~~~l~~~  396 (420)
T 3gbx_A          354 NDPKSPFVT---SGIRIGSP--AVTRRGFKEAEVKELAGWMCDVLDNI  396 (420)
T ss_dssp             TCSSCTTTC---SEEEEECH--HHHHTTCCHHHHHHHHHHHHHHHHTT
T ss_pred             CCccccCCC---cceEEecc--hhcccCCCHHHHHHHHHHHHHHHhCc
Confidence               222222   56999984  23    46899999999999987653

>2o1b_A Aminotransferase, class I; aminotrasferase; HET: PLP; 1.95A {Staphylococcus aureus}

Probab=99.84  E-value=5.5e-20  Score=186.83  Aligned_cols=284  Identities=9%  Similarity=-0.035  Sum_probs=188.1

Q ss_pred             cEEEeCcHHHHHHHHHHHHHHhcCCcccccCCCCCCCeEEEecCCCchHHHHHHHHhCCCCCcEEEEecCCC-CCcCHHH
Q psy14299          4 KPFLLPGGSISNMYSICLARYRLDPDTKRKGLSHLPPLCMFTSEDSHYSMLKAAHWLGIGMDNVIRVKTNER-GQMICSF   82 (448)
Q Consensus         4 ~g~~t~ggT~an~~al~~a~~~~~~~~~~~G~~~~~~~~Vl~~~~~H~s~~~~~~~~g~~~~~v~~v~~~~~-g~id~e~   82 (448)
                      ..++|+|+|+++..++.+...              +++.|+++...|.++...++..|.   +++.+|.+++ ..+|+++
T Consensus       111 ~v~~t~G~~~al~~~~~~l~~--------------~gd~Vl~~~p~y~~~~~~~~~~g~---~~~~v~~~~~~~~~d~~~  173 (404)
T 2o1b_A          111 EVCILYGTKNGLVAVPTCVIN--------------PGDYVLLPDPGYTDYLAGVLLADG---KPVPLNLEPPHYLPDWSK  173 (404)
T ss_dssp             SEEEESSHHHHHHHHHHHHCC--------------TTCEEEEEESCCSSHHHHHHHTTC---EEEEEECCTTTCCCCGGG
T ss_pred             cEEEcCCcHHHHHHHHHHhcC--------------CCCEEEEcCCCchhHHHHHHHCCC---EEEEeccCcccCcCCHHH
Confidence            689999999999888877533              556788888999999999998888   7888998763 4689999


Q ss_pred             HHHHHHHhhhcCCCcEEEEEeccCCccccccC---HHHHHHHHHHcCCEEEEecccccccccccchh-hhhcCCCCccEE
Q psy14299         83 LEQTIQTSLAEKKIPLFVNATAGTTVLGAFDP---LDEIATVCEKYDLWMHVDACWGGSLIFSEKYS-FVLKGINRANSV  158 (448)
Q Consensus        83 Le~~l~~~~~~~~~~~lVv~~~~~t~tG~~~~---l~~I~~ia~~~g~~l~VD~A~~~~~~~~~~~~-~~~~~~~~aD~~  158 (448)
                      |++++++      ++++|++++++|++|.+.|   +++|.++|++||+++++|++|+.+........ ....+....|++
T Consensus       174 l~~~l~~------~~~~v~l~~p~nptG~~~~~~~l~~l~~~~~~~~~~li~De~~~~~~~~g~~~~~~~~~~~~~~~i~  247 (404)
T 2o1b_A          174 VDSQIID------KTKLIYLTYPNNPTGSTATKEVFDEAIAKFKGTDTKIVHDFAYGAFGFDAKNPSILASENGKDVAIE  247 (404)
T ss_dssp             SCHHHHH------HEEEEEECSSCTTTCCCCCHHHHHHHHHHHTTSSCEEEEECTTTTCBSSSCCCCGGGSTTHHHHEEE
T ss_pred             HHHhhcc------CceEEEEcCCCCCCCccCCHHHHHHHHHHHHHcCCEEEEEccchhcccCCCCCChhhcCCCCCCEEE
Confidence            9999964      3788999999999999875   78899999999999999999987543111000 001001134688


Q ss_pred             EECCccccCCCC-ceEEEEEeccchhhhhccCCcccccccCcccccccCCCCCcccCCCCchhHHHHHHHHHhChHHHHH
Q psy14299        159 SWNPHKMLGAPL-QCSILLIKEKGLLHQANATAATYLFQQDKFYDVSFDTGDKSVQCGRKVDAFKLWLMWKARGNLGFRH  237 (448)
Q Consensus       159 ~~s~hK~l~~P~-g~G~l~vr~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~g~~~  237 (448)
                      +.++||+++.|. .+|+++.++ ++..........+..                                          
T Consensus       248 ~~s~sK~~g~~G~r~G~~~~~~-~~~~~l~~~~~~~~~------------------------------------------  284 (404)
T 2o1b_A          248 IYSLSKGYNMSGFRVGFAVGNK-DMIQALKKYQTHTNA------------------------------------------  284 (404)
T ss_dssp             EEESTTTTTCGGGCCEEEEECH-HHHHHHHHHHHHHCC------------------------------------------
T ss_pred             EEecchhccCchhheEeEecCH-HHHHHHHHHHhhccC------------------------------------------
Confidence            999999997553 468877643 333322110000000                                          


Q ss_pred             HHHHhhhhccCCCccchhhhhhhhhhhhhhhhhhhhhhhccccccccccCCCCCccccccchhhHHHHHHHHHhcCccHH
Q psy14299        238 FVDNAVDCSRGSMTFSTLLCFDLQGLLHQANATAATYLFQQDKFYDVSFDTGDKSVQCGRKVDAFKLWLMWKARGNLGFR  317 (448)
Q Consensus       238 ~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~  317 (448)
                                                                               +.+.+.+..+..+++.. ..+++
T Consensus       285 ---------------------------------------------------------~~~~~~~~a~~~~l~~~-~~~~~  306 (404)
T 2o1b_A          285 ---------------------------------------------------------GMFGALQDAAIYALNHY-DDFLE  306 (404)
T ss_dssp             ---------------------------------------------------------CCCHHHHHHHHHHHHHC-HHHHH
T ss_pred             ---------------------------------------------------------CCCHHHHHHHHHHHhcC-HHHHH
Confidence                                                                     00001111112222221 34566


Q ss_pred             HHHHHHHHHHHHHHHHhhcCCCeEEeccCCceeeEE-EEeeccCCCccccchhhhhhhhhhhHHHHHHHH-hCCcEEEEe
Q psy14299        318 HFVDNAVDCSRYFLSQISQRPGFRLVIPEFQCTNIC-FWFIPVSLRDKVEDETWWSTLSKVAPRIKEKLV-LGGTLMIGY  395 (448)
Q Consensus       318 ~~~~~~~~l~~~~~~~L~~~pg~~l~~~~~~~~~v~-f~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~L~-~~g~~~~~~  395 (448)
                      ++.++..++++++.+.|+++ |+++.  ++..+.+. +.+ |.+.+               ..++.+.|. ++| +.+.+
T Consensus       307 ~~~~~~~~~~~~l~~~L~~~-g~~~~--~~~~g~~~~~~~-~~~~~---------------~~~l~~~l~~~~g-i~v~~  366 (404)
T 2o1b_A          307 EQSNVFKTRRDRFEAMLAKA-DLPFV--HAKGGIYVWLET-PPGYD---------------SEQFEQFLVQEKS-ILVAP  366 (404)
T ss_dssp             HHHHHHHHHHHHHHHHHHHT-TCCEE--CCCBSSEEEEEC-CTTCC---------------HHHHHHHHHHHHC-EECEE
T ss_pred             HHHHHHHHHHHHHHHHHHhc-CCeec--CCCcceEEEEeC-CCCCC---------------HHHHHHHHHHHCC-EEEeC
Confidence            77888888999999999998 88875  34445433 332 22221               136778877 468 55554


Q ss_pred             eecCCcccccEEEEEecCCCCCCHHHHHHHHHHHHHHHHH
Q psy14299        396 QPLQHRNLHNFFRLVTTCHPASSRQDMDYAIDQIELRGAE  435 (448)
Q Consensus       396 ~~~~g~~~~~~lRis~~~~~~~t~edid~l~~al~~~~~~  435 (448)
                      +...+...++++|+++.  .  ++++++++++.|+++.++
T Consensus       367 g~~f~~~~~~~iRis~~--~--~~e~l~~~l~~l~~~l~~  402 (404)
T 2o1b_A          367 GKPFGENGNRYVRISLA--L--DDQKLDEAAIRLTELAYL  402 (404)
T ss_dssp             SGGGCGGGTTEEEEECC--S--CTTHHHHHHHHHHGGGGG
T ss_pred             chhhCcCCCCeEEEEEc--C--CHHHHHHHHHHHHHHHHh
Confidence            43222212479999994  2  678999999999877654

>1lc5_A COBD, L-threonine-O-3-phosphate decarboxylase; PLP-dependent decarboxylase cobalamin, lyase; 1.46A {Salmonella enterica} SCOP: c.67.1.1 PDB: 1lc7_A* 1lc8_A* 1lkc_A*

Probab=99.84  E-value=5.7e-19  Score=176.34  Aligned_cols=278  Identities=10%  Similarity=0.026  Sum_probs=180.1

Q ss_pred             cEEEeCcHHHHHHHHHHHHHHhcCCcccccCCCCCCCeEEEecCCCchHHHHHHHHhCCCCCcEEEEecCCCCCcCH-HH
Q psy14299          4 KPFLLPGGSISNMYSICLARYRLDPDTKRKGLSHLPPLCMFTSEDSHYSMLKAAHWLGIGMDNVIRVKTNERGQMIC-SF   82 (448)
Q Consensus         4 ~g~~t~ggT~an~~al~~a~~~~~~~~~~~G~~~~~~~~Vl~~~~~H~s~~~~~~~~g~~~~~v~~v~~~~~g~id~-e~   82 (448)
                      ..++|+|||+++..++.++  +             + +.|++....|.++...++..|.   +++.+|.+++..+++ ++
T Consensus        78 ~v~~~~g~~~al~~~~~~~--~-------------g-d~vl~~~p~y~~~~~~~~~~g~---~~~~v~~~~~~~~~~l~~  138 (364)
T 1lc5_A           78 WILAGNGETESIFTVASGL--K-------------P-RRAMIVTPGFAEYGRALAQSGC---EIRRWSLREADGWQLTDA  138 (364)
T ss_dssp             GEEEESSHHHHHHHHHHHH--C-------------C-SEEEEEESCCTHHHHHHHHTTC---EEEEEECCGGGTTCCCTT
T ss_pred             HEEECCCHHHHHHHHHHHc--C-------------C-CeEEEeCCCcHHHHHHHHHcCC---eEEEEeCCcccccchhHH
Confidence            5789999999998888766  3             3 4577888899999999999888   788899875333443 43


Q ss_pred             HHHHHHHhhhcCCCcEEEEEeccCCccccccC---HHHHHHHHHHcCCEEEEecccccccccccchhhhhcCCCCccEEE
Q psy14299         83 LEQTIQTSLAEKKIPLFVNATAGTTVLGAFDP---LDEIATVCEKYDLWMHVDACWGGSLIFSEKYSFVLKGINRANSVS  159 (448)
Q Consensus        83 Le~~l~~~~~~~~~~~lVv~~~~~t~tG~~~~---l~~I~~ia~~~g~~l~VD~A~~~~~~~~~~~~~~~~~~~~aD~~~  159 (448)
                      +.+.+.      .++++|++++++|++|.+.|   +++|.++|++||+++++|++|+.+........... +....|+++
T Consensus       139 ~~~~~~------~~~~~v~i~~p~nptG~~~~~~~l~~i~~~~~~~~~~li~De~~~~~~~~~~~~~~~~-~~~~~~i~~  211 (364)
T 1lc5_A          139 ILEALT------PDLDCLFLCTPNNPTGLLPERPLLQAIADRCKSLNINLILDEAFIDFIPHETGFIPAL-KDNPHIWVL  211 (364)
T ss_dssp             HHHHCC------TTCCEEEEESSCTTTCCCCCHHHHHHHHHHHHHHTCEEEEECTTGGGSTTCCCSGGGC-TTCTTEEEE
T ss_pred             HHHhcc------CCCCEEEEeCCCCCCCCCCCHHHHHHHHHHhhhcCcEEEEECcChhhccCccchhhHh-ccCCCEEEE
Confidence            433331      24778888999999999988   99999999999999999999986543110000001 112357889


Q ss_pred             ECCccccCCCC-ceEEEEEeccchhhhhccCCcccccccCcccccccCCCCCcccCCCCchhHHHHHHHHHhChHHHHHH
Q psy14299        160 WNPHKMLGAPL-QCSILLIKEKGLLHQANATAATYLFQQDKFYDVSFDTGDKSVQCGRKVDAFKLWLMWKARGNLGFRHF  238 (448)
Q Consensus       160 ~s~hK~l~~P~-g~G~l~vr~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~g~~~~  238 (448)
                      .++||+++.|. .+|++++.++++..........+                 +      ...+..+++..          
T Consensus       212 ~s~sK~~~~~G~r~G~~~~~~~~~~~~l~~~~~~~-----------------~------~~~~~~~~~~~----------  258 (364)
T 1lc5_A          212 RSLTKFYAIPGLRLGYLVNSDDAAMARMRRQQMPW-----------------S------VNALAALAGEV----------  258 (364)
T ss_dssp             EESTTTTTCTTTCCEEEECCCHHHHHHHHHHSCTT-----------------C------SCHHHHHHHHH----------
T ss_pred             EECchhhcCCccceEEEEECCHHHHHHHHHhCCCC-----------------C------CCHHHHHHHHH----------
Confidence            99999997553 46888723444433322111000                 0      00111111111          


Q ss_pred             HHHhhhhccCCCccchhhhhhhhhhhhhhhhhhhhhhhccccccccccCCCCCccccccchhhHHHHHHHHHhcCccHHH
Q psy14299        239 VDNAVDCSRGSMTFSTLLCFDLQGLLHQANATAATYLFQQDKFYDVSFDTGDKSVQCGRKVDAFKLWLMWKARGNLGFRH  318 (448)
Q Consensus       239 i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~  318 (448)
                                                                                          +++.  .+++++
T Consensus       259 --------------------------------------------------------------------~l~~--~~~~~~  268 (364)
T 1lc5_A          259 --------------------------------------------------------------------ALQD--SAWQQA  268 (364)
T ss_dssp             --------------------------------------------------------------------GGGC--HHHHHH
T ss_pred             --------------------------------------------------------------------HHhC--cHHHHH
Confidence                                                                                1111  134566


Q ss_pred             HHHHHHHHHHHHHHHhhcCCCeEEeccCCceeeEEEEeeccCCCccccchhhhhhhhhhhHHHHHHHHhCCcEEEEeeec
Q psy14299        319 FVDNAVDCSRYFLSQISQRPGFRLVIPEFQCTNICFWFIPVSLRDKVEDETWWSTLSKVAPRIKEKLVLGGTLMIGYQPL  398 (448)
Q Consensus       319 ~~~~~~~l~~~~~~~L~~~pg~~l~~~~~~~~~v~f~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~L~~~g~~~~~~~~~  398 (448)
                      +.++..++++++.+.|+++||+++.  ++..+.+.+.+ +.+                 ..++.+.|.++| +.+.++..
T Consensus       269 ~~~~~~~~~~~l~~~L~~~~~~~~~--~~~g~~~~~~~-~~~-----------------~~~l~~~l~~~g-i~v~~g~~  327 (364)
T 1lc5_A          269 TWHWLREEGARFYQALCQLPLLTVY--PGRANYLLLRC-ERE-----------------DIDLQRRLLTQR-ILIRSCAN  327 (364)
T ss_dssp             HHHHHHHHHHHHHHHHHTSTTEEEC--CCSSSEEEEEE-SCT-----------------TCCHHHHHHTTT-EECEECTT
T ss_pred             HHHHHHHHHHHHHHHHhcCCCCEEC--CCCCeEEEEEC-CCc-----------------HHHHHHHHHHCC-cEEeeCcc
Confidence            7778888899999999999999875  34444444433 211                 115778888888 55555432


Q ss_pred             CCcccccEEEEEecCCCCCCHHHHHHHHHHHHHHHHHh
Q psy14299        399 QHRNLHNFFRLVTTCHPASSRQDMDYAIDQIELRGAEV  436 (448)
Q Consensus       399 ~g~~~~~~lRis~~~~~~~t~edid~l~~al~~~~~~~  436 (448)
                      .+...++++|+++.     +++|+++++++|+++.+++
T Consensus       328 ~~~~~~~~iRis~~-----~~~~~~~l~~~l~~~~~~~  360 (364)
T 1lc5_A          328 YPGLDSRYYRVAIR-----SAAQNERLLAALRNVLTGI  360 (364)
T ss_dssp             STTCCTTEEEEECC-----CHHHHHHHHHHHHHHC---
T ss_pred             cCCCCCCEEEEEeC-----CHHHHHHHHHHHHHHhhcc
Confidence            21112379999983     6899999999999887654

>3b8x_A WBDK, pyridoxamine 5-phosphate-dependent dehydrase; aspartate aminotransferase, colitose, perosamine, O-antigen, pyridoxal phosphate,; HET: G4M; 1.70A {Escherichia coli} PDB: 2gms_A* 2gmu_A* 2r0t_A* 3gr9_A*

Probab=99.84  E-value=5.4e-19  Score=178.28  Aligned_cols=154  Identities=14%  Similarity=0.148  Sum_probs=113.4

Q ss_pred             cEEEeCcHHHHHHHHHHHHHHhcCCcccccCCCCCCCeEEEecCCCchHHHHHHHHhCCCCCcEEEEecCCC-CCcCHHH
Q psy14299          4 KPFLLPGGSISNMYSICLARYRLDPDTKRKGLSHLPPLCMFTSEDSHYSMLKAAHWLGIGMDNVIRVKTNER-GQMICSF   82 (448)
Q Consensus         4 ~g~~t~ggT~an~~al~~a~~~~~~~~~~~G~~~~~~~~Vl~~~~~H~s~~~~~~~~g~~~~~v~~v~~~~~-g~id~e~   82 (448)
                      .++++++||+++..++.+++..     +..++  .+++.|+++..+|.++..+++..|.   +++.++++++ +.+|+++
T Consensus        51 ~~i~~~sGt~a~~~al~~~~~~-----~~~~~--~~g~~Vi~~~~~~~~~~~~~~~~g~---~~~~~~~~~~~~~~d~~~  120 (390)
T 3b8x_A           51 YAVMVSSGSTANLLMIAALFFT-----KKPRL--KKGDEIIVPAVSWSTTYYPLQQYGL---RVKFVDIDINTLNIDIES  120 (390)
T ss_dssp             EEEEESCHHHHHHHHHHHTTSS-----SSCSC--CTTCEEEEESSSCHHHHHHHHHTTC---EEEEECBCTTTCSBCHHH
T ss_pred             cEEEECCHHHHHHHHHHHHHhh-----hhcCC--CCcCEEEECCCCcHHHHHHHHHcCC---EEEEEecCccccCcCHHH
Confidence            4789999999999888776321     00111  2567899999999999999999888   7889999875 8999999


Q ss_pred             HHHHHHHhhhcCCCcEEEEEeccCCccccccCHHHHHHHHHHcCCEEEEecccccccccccchhhhhcCCCCccEEEEC-
Q psy14299         83 LEQTIQTSLAEKKIPLFVNATAGTTVLGAFDPLDEIATVCEKYDLWMHVDACWGGSLIFSEKYSFVLKGINRANSVSWN-  161 (448)
Q Consensus        83 Le~~l~~~~~~~~~~~lVv~~~~~t~tG~~~~l~~I~~ia~~~g~~l~VD~A~~~~~~~~~~~~~~~~~~~~aD~~~~s-  161 (448)
                      |++++++      ++++|++++   ++|...|+++|.++|++||+++|+|++|+.+... +...  . +. ..|..+++ 
T Consensus       121 l~~~i~~------~~~~v~~~~---~~g~~~~~~~i~~l~~~~~~~li~D~a~~~g~~~-~~~~--~-g~-~~~~~~~s~  186 (390)
T 3b8x_A          121 LKEAVTD------STKAILTVN---LLGNPNNFDEINKIIGGRDIILLEDNCESMGATF-NNKC--A-GT-FGLMGTFSS  186 (390)
T ss_dssp             HHHHCCT------TEEEEEEEC---GGGCCCCHHHHHHHHTTSCCEEEEECTTCTTCEE-TTEE--T-TS-SSSEEEEEC
T ss_pred             HHHHhCc------CCeEEEEEC---CccChhhHHHHHHHHHHcCCEEEEECcCcccCEE-CCcc--c-cc-ccceEEEEc
Confidence            9999854      477888763   5788999999999999999999999999977654 2111  1 11 13444433 


Q ss_pred             -CccccCCCCceEEEEEeccch
Q psy14299        162 -PHKMLGAPLQCSILLIKEKGL  182 (448)
Q Consensus       162 -~hK~l~~P~g~G~l~vr~~~~  182 (448)
                       +.|.+++|.| |+++.+++.+
T Consensus       187 ~~~k~~~~g~g-G~~~~~~~~l  207 (390)
T 3b8x_A          187 FYSNHIATMEG-GCIVTDDEEI  207 (390)
T ss_dssp             CTTSSSCSSSC-EEEEESCHHH
T ss_pred             cCCCCCccCCc-eEEEeCCHHH
Confidence             3444555555 7777765443

>1yiz_A Kynurenine aminotransferase; glutamine transaminase; kynurenic acid, mosquito, PLP-enzyme, pyridoxal phosphate, PLP; HET: LLP; 1.55A {Aedes aegypti} SCOP: c.67.1.1 PDB: 1yiy_A* 2r5c_A* 2r5e_A*

Probab=99.84  E-value=8.4e-20  Score=186.44  Aligned_cols=152  Identities=11%  Similarity=-0.016  Sum_probs=119.0

Q ss_pred             cEEEeCcHHHHHHHHHHHHHHhcCCcccccCCCCCCCeEEEecCCCchHHHHHHHHhCCCCCcEEEEecCC---------
Q psy14299          4 KPFLLPGGSISNMYSICLARYRLDPDTKRKGLSHLPPLCMFTSEDSHYSMLKAAHWLGIGMDNVIRVKTNE---------   74 (448)
Q Consensus         4 ~g~~t~ggT~an~~al~~a~~~~~~~~~~~G~~~~~~~~Vl~~~~~H~s~~~~~~~~g~~~~~v~~v~~~~---------   74 (448)
                      .+++|+|||+++..++.++..              +++.|+++...|+++...++..|.   +++.+|.++         
T Consensus       103 ~v~~~~g~~~a~~~~~~~~~~--------------~gd~Vl~~~p~y~~~~~~~~~~g~---~~~~~~~~~~~~~~~~~~  165 (429)
T 1yiz_A          103 EVLVTVGAYEALYATIQGHVD--------------EGDEVIIIEPFFDCYEPMVKAAGG---IPRFIPLKPNKTGGTISS  165 (429)
T ss_dssp             SEEEESHHHHHHHHHHHHHCC--------------TTCEEEEEESCCTTHHHHHHHTTC---EEEEEECBCCCSSSSEEG
T ss_pred             CEEEecChHHHHHHHHHHhcC--------------CCCEEEEcCCCchhHHHHHHHcCC---EEEEEeCCcccccccccc
Confidence            589999999999988877643              556788888999999999998888   788888865         


Q ss_pred             -CCCcCHHHHHHHHHHhhhcCCCcEEEEEeccCCccccccC---HHHHHHHHHHcCCEEEEecccccccccccch-hh-h
Q psy14299         75 -RGQMICSFLEQTIQTSLAEKKIPLFVNATAGTTVLGAFDP---LDEIATVCEKYDLWMHVDACWGGSLIFSEKY-SF-V  148 (448)
Q Consensus        75 -~g~id~e~Le~~l~~~~~~~~~~~lVv~~~~~t~tG~~~~---l~~I~~ia~~~g~~l~VD~A~~~~~~~~~~~-~~-~  148 (448)
                       ++.+|+++|++++++      ++++|++++++|++|.+.|   +++|.++|++||+++++|++|+......... .. .
T Consensus       166 ~~~~~d~~~l~~~l~~------~~~~v~~~~p~nptG~~~~~~~l~~i~~~~~~~~~~li~De~~~~~~~~g~~~~~~~~  239 (429)
T 1yiz_A          166 ADWVLDNNELEALFNE------KTKMIIINTPHNPLGKVMDRAELEVVANLCKKWNVLCVSDEVYEHMVFEPFEHIRICT  239 (429)
T ss_dssp             GGCBCCHHHHHHHCCT------TEEEEEEESSCTTTCCCCCHHHHHHHHHHHHHHTCEEEEECTTTTCBCTTSCCCCGGG
T ss_pred             cCcccCHHHHHHHhcc------CceEEEECCCCCCCCccCCHHHHHHHHHHHHHcCcEEEEeccccccccCCCCCcChhh
Confidence             357999999999853      5789999999999999875   9999999999999999999998654311100 00 0


Q ss_pred             hcCCCCccEEEECCccccCCCCc--eEEEEEec
Q psy14299        149 LKGINRANSVSWNPHKMLGAPLQ--CSILLIKE  179 (448)
Q Consensus       149 ~~~~~~aD~~~~s~hK~l~~P~g--~G~l~vr~  179 (448)
                      +.+....|+++.++||+++ +.|  +|++++++
T Consensus       240 ~~~~~~~~~~~~s~sK~~~-~~G~r~G~~~~~~  271 (429)
T 1yiz_A          240 LPGMWERTITIGSAGKTFS-LTGWKIGWAYGPE  271 (429)
T ss_dssp             STTTGGGEEEEEEHHHHHT-CGGGCCEEEESCH
T ss_pred             ccCCcCceEEEecchhccC-CCCcceEEEEeCH
Confidence            1112247899999999987 445  88888754

>3aow_A Putative uncharacterized protein PH0207; protein-PLP-AKG triple complex, schiff-base linkage, kynuren aminotransferase; HET: PLP AKG; 1.56A {Pyrococcus horikoshii} PDB: 3aov_A* 3ath_A* 3av7_A* 1x0m_A 1wst_A*

Probab=99.83  E-value=8.2e-19  Score=180.95  Aligned_cols=292  Identities=12%  Similarity=0.107  Sum_probs=189.4

Q ss_pred             cEEEeCcHHHHHHHHHHHHHHhcCCcccccCCCCCCCeEEEecCCCchHHHHHHHHhCCCCCcEEEEecCCCCCcCHHHH
Q psy14299          4 KPFLLPGGSISNMYSICLARYRLDPDTKRKGLSHLPPLCMFTSEDSHYSMLKAAHWLGIGMDNVIRVKTNERGQMICSFL   83 (448)
Q Consensus         4 ~g~~t~ggT~an~~al~~a~~~~~~~~~~~G~~~~~~~~Vl~~~~~H~s~~~~~~~~g~~~~~v~~v~~~~~g~id~e~L   83 (448)
                      .+++|+|||+++..++.+..+              +++.|+++...|.++...++..|.   +++.+|.++++ +|+++|
T Consensus       142 ~v~~t~G~~~al~~~~~~l~~--------------~Gd~Vlv~~p~y~~~~~~~~~~g~---~~~~v~~~~~g-~d~~~L  203 (448)
T 3aow_A          142 DIMITSGSQQALDLIGRVFLN--------------PGDIVVVEAPTYLAALQAFNFYEP---QYIQIPLDDEG-MKVEIL  203 (448)
T ss_dssp             EEEEESSHHHHHHHHHHHHCC--------------TTCEEEEEESCCHHHHHHHHTTCC---EEEEEEEETTE-ECHHHH
T ss_pred             hEEEeCcHHHHHHHHHHHHcC--------------CCCEEEEeCCChHHHHHHHHHcCC---EEEEeccCCCC-CCHHHH
Confidence            578999999999888877643              567889999999999999998888   78899987765 999999


Q ss_pred             HHHHHHhhhcCCCcEEE-EEeccCCccccccC---HHHHHHHHHHcCCEEEEecccccccccccchhhhhcCC--CCccE
Q psy14299         84 EQTIQTSLAEKKIPLFV-NATAGTTVLGAFDP---LDEIATVCEKYDLWMHVDACWGGSLIFSEKYSFVLKGI--NRANS  157 (448)
Q Consensus        84 e~~l~~~~~~~~~~~lV-v~~~~~t~tG~~~~---l~~I~~ia~~~g~~l~VD~A~~~~~~~~~~~~~~~~~~--~~aD~  157 (448)
                      +++++.....+.++++| ++..++|++|.+.|   +++|.++|++||+++++|++|+...+...... .+..+  ...++
T Consensus       204 ~~~l~~~~~~~~~~k~v~~~~~~~NPtG~~~~~~~l~~i~~la~~~~~~lI~De~y~~~~~~g~~~~-~~~~~~~~~~vi  282 (448)
T 3aow_A          204 EEKLKELKSQGKKVKVVYTVPTFQNPAGVTMNEDRRKYLLELASEYDFIVVEDDPYGELRYSGNPEK-KIKALDNEGRVI  282 (448)
T ss_dssp             HHHHHHHHHTTCCEEEEEECCSSCTTTCCCCCHHHHHHHHHHHHHHTCEEEEECSCTTCBCSSCCCC-CTGGGCTTSCEE
T ss_pred             HHHHhhhhccCCCCeEEEECCCCCCCcCCCCCHHHHHHHHHHHHHcCCEEEEECCCccccCCCCCCc-CHHhcCCCCCEE
Confidence            99997321122357887 56788999998876   57899999999999999999987654211100 01111  12467


Q ss_pred             EEECCccccCCCC-ceEEEEEeccchhhhhccCCcccccccCcccccccCCCCCcccCCCCchhHHHHHHHHHhChHHHH
Q psy14299        158 VSWNPHKMLGAPL-QCSILLIKEKGLLHQANATAATYLFQQDKFYDVSFDTGDKSVQCGRKVDAFKLWLMWKARGNLGFR  236 (448)
Q Consensus       158 ~~~s~hK~l~~P~-g~G~l~vr~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~g~~  236 (448)
                      .+.+++|+++ |. .+|++++++ ++..........+..                                         
T Consensus       283 ~~~S~SK~~~-~GlriG~v~~~~-~l~~~l~~~~~~~~~-----------------------------------------  319 (448)
T 3aow_A          283 YLGTFSKILA-PGFRIGWMVGDP-GIIRKMEIAKQSTDL-----------------------------------------  319 (448)
T ss_dssp             EEEESTTTTC-GGGCCEEEEECH-HHHHHHHHHHHHHHS-----------------------------------------
T ss_pred             EEccchhhcc-ccccEEEEEeCH-HHHHHHHHHHHHhcC-----------------------------------------
Confidence            8889999997 42 378888754 333322110000000                                         


Q ss_pred             HHHHHhhhhccCCCccchhhhhhhhhhhhhhhhhhhhhhhccccccccccCCCCCccccccchhhHHHHHHHHHh-cCcc
Q psy14299        237 HFVDNAVDCSRGSMTFSTLLCFDLQGLLHQANATAATYLFQQDKFYDVSFDTGDKSVQCGRKVDAFKLWLMWKAR-GNLG  315 (448)
Q Consensus       237 ~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~G  315 (448)
                                                                                +.+.+.+..+..+++.. -...
T Consensus       320 ----------------------------------------------------------~~~~~~q~a~~~~L~~~~~~~~  341 (448)
T 3aow_A          320 ----------------------------------------------------------CTNVFGQVVAWRYVDGGYLEKH  341 (448)
T ss_dssp             ----------------------------------------------------------SCCHHHHHHHHHHHHTTHHHHH
T ss_pred             ----------------------------------------------------------CCCHHHHHHHHHHHHhCCHHHH
Confidence                                                                      00000111111112110 0123


Q ss_pred             HHHHHHHHHHHHHHHHHHhhc-CC-CeEEeccCCceeeEEEEeeccCCCccccchhhhhhhhhhhHHHHHHHHhCCcEEE
Q psy14299        316 FRHFVDNAVDCSRYFLSQISQ-RP-GFRLVIPEFQCTNICFWFIPVSLRDKVEDETWWSTLSKVAPRIKEKLVLGGTLMI  393 (448)
Q Consensus       316 ~~~~~~~~~~l~~~~~~~L~~-~p-g~~l~~~~~~~~~v~f~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~L~~~g~~~~  393 (448)
                      ++++.++..++++++.+.|++ +| |+++.  .|..+.+.+...|.+.+               ..++.+.|.++| +.+
T Consensus       342 ~~~~~~~~~~~~~~l~~~L~~~~~~g~~~~--~p~~g~~~~v~~~~~~~---------------~~~l~~~l~~~g-V~v  403 (448)
T 3aow_A          342 IPEIRKFYKPRRDAMLEALEEFMPEGVKWT--KPEGGMFIWVTLPDGID---------------SKKMLERAIKKG-VAY  403 (448)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHCCTTCEEC--CCSBSSEEEEECSTTCC---------------HHHHHHHHHHTT-EEC
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhCCCCeEEe--CCCccEEEEEEcCCCCC---------------HHHHHHHHHHCC-cEE
Confidence            455677777889999999987 57 68875  34444444322232221               237888999998 555


Q ss_pred             EeeecCCc--ccccEEEEEecCCCCCCHHHHHHHHHHHHHHHHHh
Q psy14299        394 GYQPLQHR--NLHNFFRLVTTCHPASSRQDMDYAIDQIELRGAEV  436 (448)
Q Consensus       394 ~~~~~~g~--~~~~~lRis~~~~~~~t~edid~l~~al~~~~~~~  436 (448)
                      .++...+.  ..++++|+++.  . .++++++++++.|+++.++.
T Consensus       404 ~pg~~f~~~~~~~~~iRls~~--~-~~~e~i~~~~~~L~~~l~~~  445 (448)
T 3aow_A          404 VPGEAFYAHRDVKNTMRLNFT--Y-VDEDKIMEGIKRLAETIKEE  445 (448)
T ss_dssp             EEGGGGSTTCCCCSEEEEECS--S-SCTHHHHHHHHHHHHHHHHH
T ss_pred             EcchhhcCCCCCCCEEEEEeC--C-CCHHHHHHHHHHHHHHHHHH
Confidence            44432211  12379999994  3 48999999999999988654

>1fg7_A Histidinol phosphate aminotransferase; HISC, histidine biosynthesis, pyridoxal PH montreal-kingston bacterial structural genomics initiative; HET: PMP; 1.50A {Escherichia coli} SCOP: c.67.1.1 PDB: 1fg3_A* 1gew_A* 1gex_A* 1gey_A* 1iji_A*

Probab=99.83  E-value=8.7e-19  Score=174.92  Aligned_cols=272  Identities=12%  Similarity=0.085  Sum_probs=179.1

Q ss_pred             cEEEeCcHHHHHHHHHHHHHHhcCCcccccCCCCCCC-eEEEecCCCchHHHHHHHHhCCCCCcEEEEecCCCCCcCHHH
Q psy14299          4 KPFLLPGGSISNMYSICLARYRLDPDTKRKGLSHLPP-LCMFTSEDSHYSMLKAAHWLGIGMDNVIRVKTNERGQMICSF   82 (448)
Q Consensus         4 ~g~~t~ggT~an~~al~~a~~~~~~~~~~~G~~~~~~-~~Vl~~~~~H~s~~~~~~~~g~~~~~v~~v~~~~~g~id~e~   82 (448)
                      ..++|+|+|+++..++.+.+.              ++ +.|+++..+|.++...++..|.   +++.+|.++++.+|+++
T Consensus        77 ~v~~~~G~~~ai~~~~~~~~~--------------~g~d~Vl~~~p~~~~~~~~~~~~g~---~~~~v~~~~~~~~d~~~  139 (356)
T 1fg7_A           77 QVLVSRGADEGIELLIRAFCE--------------PGKDAILYCPPTYGMYSVSAETIGV---ECRTVPTLDNWQLDLQG  139 (356)
T ss_dssp             GEEEESHHHHHHHHHHHHHCC--------------TTTCEEEECSSSCTHHHHHHHHHTC---EEEECCCCTTSCCCHHH
T ss_pred             HEEEcCCHHHHHHHHHHHHhC--------------CCCCEEEEeCCChHHHHHHHHHcCC---EEEEeeCCCCCCCCHHH
Confidence            578999999999888876543              45 6788999999999999999998   78889988778899999


Q ss_pred             HHHHHHHhhhcCCCcEEEEEeccCCccccccCHHHHH---HHHHHcCCEEEEecccccccccccchhhhhcCCCCccEEE
Q psy14299         83 LEQTIQTSLAEKKIPLFVNATAGTTVLGAFDPLDEIA---TVCEKYDLWMHVDACWGGSLIFSEKYSFVLKGINRANSVS  159 (448)
Q Consensus        83 Le~~l~~~~~~~~~~~lVv~~~~~t~tG~~~~l~~I~---~ia~~~g~~l~VD~A~~~~~~~~~~~~~~~~~~~~aD~~~  159 (448)
                      ++++++       ++++|++++++|+||.+.|.+++.   ++|+ +|+++++|++|+..... ......... ...++++
T Consensus       140 l~~~i~-------~~~~v~l~~p~nptG~~~~~~~l~~l~~~~~-~~~~li~De~~~~~~~~-~~~~~~~~~-~~~~i~~  209 (356)
T 1fg7_A          140 ISDKLD-------GVKVVYVCSPNNPTGQLINPQDFRTLLELTR-GKAIVVADEAYIEFCPQ-ASLAGWLAE-YPHLAIL  209 (356)
T ss_dssp             HHTSCT-------TEEEEEEESSCTTTCCCCCHHHHHHHHHHHT-TTCEEEEECTTGGGSGG-GCSGGGTTT-CTTEEEE
T ss_pred             HHHHhc-------CCCEEEEeCCCCCCCCCCCHHHHHHHHHhCC-CCCEEEEEccchhhcCC-CcHHHHHhh-CCCEEEE
Confidence            988874       378999999999999998865554   5555 99999999999865411 111111111 1346888


Q ss_pred             ECCccccCCCC-ceEEEEEeccchhhhhccCCcccccccCcccccccCCCCCcccCCCCchhHHHHHHHHHhChHHHHHH
Q psy14299        160 WNPHKMLGAPL-QCSILLIKEKGLLHQANATAATYLFQQDKFYDVSFDTGDKSVQCGRKVDAFKLWLMWKARGNLGFRHF  238 (448)
Q Consensus       160 ~s~hK~l~~P~-g~G~l~vr~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~g~~~~  238 (448)
                      .+++|+++.|. .+|++++++ ++..........|                 +      ...+...++...+...++   
T Consensus       210 ~s~sK~~g~~G~r~G~~~~~~-~~~~~l~~~~~~~-----------------~------~~~~~~~a~~~~l~~~~~---  262 (356)
T 1fg7_A          210 RTLSKAFALAGLRCGFTLANE-EVINLLMKVIAPY-----------------P------LSTPVADIAAQALSPQGI---  262 (356)
T ss_dssp             EESSSTTCCGGGCCEEEEECH-HHHHHHHHHSCSS-----------------C------SCHHHHHHHHHHTSHHHH---
T ss_pred             ecchHhhcCchhhhEEEEeCH-HHHHHHHHhcCCC-----------------C------CCHHHHHHHHHHhcCccH---
Confidence            89999987442 368888744 4433322111111                 0      001111111111111110   


Q ss_pred             HHHhhhhccCCCccchhhhhhhhhhhhhhhhhhhhhhhccccccccccCCCCCccccccchhhHHHHHHHHHhcCccHHH
Q psy14299        239 VDNAVDCSRGSMTFSTLLCFDLQGLLHQANATAATYLFQQDKFYDVSFDTGDKSVQCGRKVDAFKLWLMWKARGNLGFRH  318 (448)
Q Consensus       239 i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~  318 (448)
                                                                                                 +.+++
T Consensus       263 ---------------------------------------------------------------------------~~~~~  267 (356)
T 1fg7_A          263 ---------------------------------------------------------------------------VAMRE  267 (356)
T ss_dssp             ---------------------------------------------------------------------------HHHHH
T ss_pred             ---------------------------------------------------------------------------HHHHH
Confidence                                                                                       12456


Q ss_pred             HHHHHHHHHHHHHHHhhcCCCeEEeccCCceeeEEEEeeccCCCccccchhhhhhhhhhhHHHHHHHHhCCcEEEEe-ee
Q psy14299        319 FVDNAVDCSRYFLSQISQRPGFRLVIPEFQCTNICFWFIPVSLRDKVEDETWWSTLSKVAPRIKEKLVLGGTLMIGY-QP  397 (448)
Q Consensus       319 ~~~~~~~l~~~~~~~L~~~pg~~l~~~~~~~~~v~f~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~L~~~g~~~~~~-~~  397 (448)
                      +.++..++++++.+.|++++++..+ .++..+.+.+.+ +   +               ..++.+.|.++| +.+.+ +.
T Consensus       268 ~~~~~~~~~~~l~~~L~~~~~~~~~-~~~~~~~~~~~~-~---~---------------~~~l~~~L~~~g-I~v~~~g~  326 (356)
T 1fg7_A          268 RVAQIIAEREYLIAALKEIPCVEQV-FDSETNYILARF-K---A---------------SSAVFKSLWDQG-IILRDQNK  326 (356)
T ss_dssp             HHHHHHHHHHHHHHHHHHSTTEEEE-CCCSSSEEEEEE-T---T---------------HHHHHHHHHHTT-EECEECTT
T ss_pred             HHHHHHHHHHHHHHHHHhCCCceEE-CCCCCeEEEEEC-C---C---------------HHHHHHHHHHCC-EEEEECCC
Confidence            6777888899999999999764333 344444444432 1   1               136888898888 55554 43


Q ss_pred             cCCcccccEEEEEecCCCCCCHHHHHHHHHHHHHH
Q psy14299        398 LQHRNLHNFFRLVTTCHPASSRQDMDYAIDQIELR  432 (448)
Q Consensus       398 ~~g~~~~~~lRis~~~~~~~t~edid~l~~al~~~  432 (448)
                      ..+.  ++++|+++.     +++|+++++++|+++
T Consensus       327 ~~~~--~~~iRis~~-----~~~e~~~~~~~l~~~  354 (356)
T 1fg7_A          327 QPSL--SGCLRITVG-----TREESQRVIDALRAE  354 (356)
T ss_dssp             STTC--TTEEEEECC-----CHHHHHHHHHHHHTC
T ss_pred             CCCC--CCeEEEEeC-----CHHHHHHHHHHHHhh
Confidence            3332  369999993     589999999999753

>1w23_A Phosphoserine aminotransferase; pyridoxal-5'-phosphate; HET: PGE PLP EPE; 1.08A {Bacillus alcalophilus} SCOP: c.67.1.4 PDB: 2bhx_A* 2bi1_A* 2bi2_A* 2bi3_A* 2bi5_A* 2bi9_A* 2bia_A* 2bie_A* 2big_A*

Probab=99.83  E-value=2.1e-20  Score=185.81  Aligned_cols=283  Identities=13%  Similarity=0.072  Sum_probs=186.3

Q ss_pred             cEEEeCcH-HHHHHHHHHHHHHhcCCcccccCCCCCCCeEEEecCCCchHHHHHHHHhCCCCCcEEEEecCC-CCCcCHH
Q psy14299          4 KPFLLPGG-SISNMYSICLARYRLDPDTKRKGLSHLPPLCMFTSEDSHYSMLKAAHWLGIGMDNVIRVKTNE-RGQMICS   81 (448)
Q Consensus         4 ~g~~t~gg-T~an~~al~~a~~~~~~~~~~~G~~~~~~~~Vl~~~~~H~s~~~~~~~~g~~~~~v~~v~~~~-~g~id~e   81 (448)
                      .+++|+|+ |+++..++.....+        |   .+++.|+++..+|++... ++..|    +++.++.++ ++.+|++
T Consensus        68 ~v~~~~g~gt~al~~~~~~l~~~--------~---~~g~~vi~~~~~~~~~~~-~~~~g----~~~~v~~~~~~~~~d~~  131 (360)
T 1w23_A           68 QILFLQGGASLQFTMLPMNLLTK--------G---TIGNYVLTGSWSEKALKE-AKLLG----ETHIAASTKANSYQSIP  131 (360)
T ss_dssp             EEEEESSHHHHHHHHHHHHHCCT--------T---CEEEEEECSHHHHHHHHH-HHTTS----EEEEEEECGGGTSCSCC
T ss_pred             eEEEECCcchHHHHHHHHHhcCC--------C---CcccEEEecchhHHHHHH-HHHhC----CeEEeecccccCcCCcc
Confidence            57899998 99988877655432        1   245678888888887443 34333    477888875 6678999


Q ss_pred             HHHH-HHHHhhhcCCCcEEEEEeccCCccccccCHHHHHHHHHHcCCEEEEecccccccccccchhhhhcCCCCccEEEE
Q psy14299         82 FLEQ-TIQTSLAEKKIPLFVNATAGTTVLGAFDPLDEIATVCEKYDLWMHVDACWGGSLIFSEKYSFVLKGINRANSVSW  160 (448)
Q Consensus        82 ~Le~-~l~~~~~~~~~~~lVv~~~~~t~tG~~~~l~~I~~ia~~~g~~l~VD~A~~~~~~~~~~~~~~~~~~~~aD~~~~  160 (448)
                      +|++ ++++      ++++|++++++|++|.+.|  +   ++++||+++++|++|+.+..+.+     +..   .|+++.
T Consensus       132 ~l~~~~i~~------~~k~v~~~~~~nptG~~~~--~---i~~~~~~~li~D~a~~~~~~~~~-----~~~---~di~~~  192 (360)
T 1w23_A          132 DFSEFQLNE------NDAYLHITSNNTIYGTQYQ--N---FPEINHAPLIADMSSDILSRPLK-----VNQ---FGMIYA  192 (360)
T ss_dssp             CGGGCCCCT------TEEEEEEESEETTTTEECS--S---CCCCCSSCEEEECTTTTTSSCCC-----GGG---CSEEEE
T ss_pred             chHhhccCC------CCCEEEEeCCCCCcceecc--c---ccccCCceEEEechhhcCCCCcC-----ccc---CCEEEE
Confidence            9988 7732      5899999999999999866  3   33389999999999998765432     111   389999


Q ss_pred             CCccccCCCCceEEEEEeccchhhhhccCCcccccccCcccccccCCCCCcccCCCCchhHHHHHHHHHhChHHHHHHHH
Q psy14299        161 NPHKMLGAPLQCSILLIKEKGLLHQANATAATYLFQQDKFYDVSFDTGDKSVQCGRKVDAFKLWLMWKARGNLGFRHFVD  240 (448)
Q Consensus       161 s~hK~l~~P~g~G~l~vr~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~g~~~~i~  240 (448)
                      ++||+++ |.|+|+++++++ .+.......+.++...                                       ...+
T Consensus       193 s~sK~~~-~~G~G~~~~~~~-~~~~~~~~~~~~~~~~---------------------------------------~~~~  231 (360)
T 1w23_A          193 GAQKNLG-PSGVTVVIVKKD-LLNTKVEQVPTMLQYA---------------------------------------THIK  231 (360)
T ss_dssp             ETTTTTS-CTTCEEEEEEHH-HHCSCCTTCCGGGCHH---------------------------------------HHHH
T ss_pred             EcccccC-CCCcEEEEEcHH-HHhhcccCCcchhhhh---------------------------------------hhhh
Confidence            9999886 778999998764 3322211111111000                                       0000


Q ss_pred             HhhhhccCCCccchhhhhhhhhhhhhhhhhhhhhhhccccccccccCCCCCccccccchhhHHHHHHHHHhcCc-cHHHH
Q psy14299        241 NAVDCSRGSMTFSTLLCFDLQGLLHQANATAATYLFQQDKFYDVSFDTGDKSVQCGRKVDAFKLWLMWKARGNL-GFRHF  319 (448)
Q Consensus       241 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-G~~~~  319 (448)
                                                                      .+....+.+...+.++..+++....+ |++++
T Consensus       232 ------------------------------------------------~~~~~~~~~~~~~~~~~~al~~~~~~~~~~~~  263 (360)
T 1w23_A          232 ------------------------------------------------SDSLYNTPPTFSIYMLRNVLDWIKDLGGAEAI  263 (360)
T ss_dssp             ------------------------------------------------TTTCSSCCCHHHHHHHHHHHHHHHHTTHHHHH
T ss_pred             ------------------------------------------------ccCCCCCCCHHHHHHHHHHHHHHHHhcCHHHH
Confidence                                                            00000112233344555566665555 78999


Q ss_pred             HHHHHHHHHHHHHHhhcCCCe-EEeccCC--cee-eEEEEeeccCCCccccchhhhhhhhhhhHHHHHHHHhCCcEEEEe
Q psy14299        320 VDNAVDCSRYFLSQISQRPGF-RLVIPEF--QCT-NICFWFIPVSLRDKVEDETWWSTLSKVAPRIKEKLVLGGTLMIGY  395 (448)
Q Consensus       320 ~~~~~~l~~~~~~~L~~~pg~-~l~~~~~--~~~-~v~f~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~L~~~g~~~~~~  395 (448)
                      .++..++++++.+.|+++|++ ... .++  ..+ ++.|.+ |..               ....++.+.|.++| +.+.+
T Consensus       264 ~~~~~~~~~~l~~~L~~~~~~~~~~-~~~~~~~~~~~~~~~-~~~---------------~~~~~~~~~l~~~g-i~~~~  325 (360)
T 1w23_A          264 AKQNEEKAKIIYDTIDESNGFYVGH-AEKGSRSLMNVTFNL-RNE---------------ELNQQFLAKAKEQG-FVGLN  325 (360)
T ss_dssp             HHHHHHHHHHHHHHHHTTTTSSEES-SCGGGBCSSEEEEEC-SSH---------------HHHHHHHHHHHHTT-EESCB
T ss_pred             HHHHHHHHHHHHHHHHHccCccccc-CCchhccCcEEEEEc-CCC---------------ccHHHHHHHHHHCC-eeeec
Confidence            999999999999999999765 653 223  234 555543 110               01236778888888 44433


Q ss_pred             eecCCcccccEEEEEecCCCCCCHHHHHHHHHHHHHHHH
Q psy14299        396 QPLQHRNLHNFFRLVTTCHPASSRQDMDYAIDQIELRGA  434 (448)
Q Consensus       396 ~~~~g~~~~~~lRis~~~~~~~t~edid~l~~al~~~~~  434 (448)
                      ...    .++++|+++  +.+++++|+++++++|+++.+
T Consensus       326 ~~~----~~~~iRis~--~~~~~~~~i~~~~~~l~~~~~  358 (360)
T 1w23_A          326 GHR----SVGGCRASI--YNAVPIDACIALRELMIQFKE  358 (360)
T ss_dssp             CCT----TTCSEEEEC--CTTSCHHHHHHHHHHHHHHHH
T ss_pred             CCC----CCCeEEEEe--cCCCCHHHHHHHHHHHHHHHh
Confidence            221    136899999  678999999999999998765

>1b5p_A Protein (aspartate aminotransferase); pyridoxal enzyme; HET: PLP; 1.80A {Thermus thermophilus} SCOP: c.67.1.1 PDB: 1gck_A* 1b5o_A* 5bj4_A* 1gc4_A* 1gc3_A* 1bkg_A* 5bj3_A* 1bjw_A*

Probab=99.83  E-value=1.8e-19  Score=181.56  Aligned_cols=150  Identities=13%  Similarity=0.040  Sum_probs=117.5

Q ss_pred             cEEEeCcHHHHHHHHHHHHHHhcCCcccccCCCCCCCeEEEecCCCchHHHHHHHHhCCCCCcEEEEecCC--CCCcCHH
Q psy14299          4 KPFLLPGGSISNMYSICLARYRLDPDTKRKGLSHLPPLCMFTSEDSHYSMLKAAHWLGIGMDNVIRVKTNE--RGQMICS   81 (448)
Q Consensus         4 ~g~~t~ggT~an~~al~~a~~~~~~~~~~~G~~~~~~~~Vl~~~~~H~s~~~~~~~~g~~~~~v~~v~~~~--~g~id~e   81 (448)
                      ..++|+|||+++.+++.+..+              +++.|+++...|.++...++..|.   +++.+|.++  ++.+|++
T Consensus        93 ~i~~t~g~~~al~~~~~~l~~--------------~gd~Vlv~~p~y~~~~~~~~~~g~---~~~~v~~~~~~~~~~d~~  155 (385)
T 1b5p_A           93 ETIVTVGGSQALFNLFQAILD--------------PGDEVIVLSPYWVSYPEMVRFAGG---VVVEVETLPEEGFVPDPE  155 (385)
T ss_dssp             GEEEESHHHHHHHHHHHHHCC--------------TTCEEEEEESCCTHHHHHHHHTTC---EEEEEECCGGGTTCCCHH
T ss_pred             HEEEcCChHHHHHHHHHHhcC--------------CCCEEEEcCCCchhHHHHHHHcCC---EEEEeecCcccCCCCCHH
Confidence            478999999999888876533              567788899999999999999988   789999874  4589999


Q ss_pred             HHHHHHHHhhhcCCCcEEEEEeccCCccccccC---HHHHHHHHHHcCCEEEEecccccccccccchhhhhcCCC-CccE
Q psy14299         82 FLEQTIQTSLAEKKIPLFVNATAGTTVLGAFDP---LDEIATVCEKYDLWMHVDACWGGSLIFSEKYSFVLKGIN-RANS  157 (448)
Q Consensus        82 ~Le~~l~~~~~~~~~~~lVv~~~~~t~tG~~~~---l~~I~~ia~~~g~~l~VD~A~~~~~~~~~~~~~~~~~~~-~aD~  157 (448)
                      +|++++++      ++++|++++++|+||.+.|   +++|+++|++||+++++|++|+......+. . .+..+. ..++
T Consensus       156 ~l~~~l~~------~~~~v~~~~p~NPtG~~~~~~~l~~i~~~~~~~~~~li~De~~~~~~~~~~~-~-~~~~~~~~~~i  227 (385)
T 1b5p_A          156 RVRRAITP------RTKALVVNSPNNPTGAVYPKEVLEALARLAVEHDFYLVSDEIYEHLLYEGEH-F-SPGRVAPEHTL  227 (385)
T ss_dssp             HHHTTCCT------TEEEEEEESSCTTTCCCCCHHHHHHHHHHHHHTTCEEEEECTTTTCBSSSCC-C-CGGGTCTTTEE
T ss_pred             HHHHhcCC------CCEEEEEeCCCCCCCCCcCHHHHHHHHHHHHHcCCEEEEEccchhcccCCCC-C-CHHHcCCCCEE
Confidence            99998854      4789999999999999866   899999999999999999998865431110 0 011111 2467


Q ss_pred             EEECCccccCCCCc--eEEEEEec
Q psy14299        158 VSWNPHKMLGAPLQ--CSILLIKE  179 (448)
Q Consensus       158 ~~~s~hK~l~~P~g--~G~l~vr~  179 (448)
                      ++.+++|+++.| |  +|+++.++
T Consensus       228 ~~~s~SK~~~~~-G~RiG~~~~~~  250 (385)
T 1b5p_A          228 TVNGAAKAFAMT-GWRIGYACGPK  250 (385)
T ss_dssp             EEEESTTTTTCG-GGCCEEEECCH
T ss_pred             EEEechhhcCCc-ccceEEEEeCH
Confidence            888999998754 5  78887744

>2fyf_A PSAT, phosphoserine aminotransferase; PLP-dependent enzyme, dimer, structural genomics; HET: PLP; 1.50A {Mycobacterium tuberculosis} PDB: 3vom_A*

Probab=99.83  E-value=9.7e-20  Score=184.40  Aligned_cols=285  Identities=11%  Similarity=-0.015  Sum_probs=185.9

Q ss_pred             cEEE-eCcHHHHHHHHHHHHHHhcCCcccccCCCCCCCeEEEecCCCchH-HHHHHHHh--CCCCCcEEEEecCCCCCcC
Q psy14299          4 KPFL-LPGGSISNMYSICLARYRLDPDTKRKGLSHLPPLCMFTSEDSHYS-MLKAAHWL--GIGMDNVIRVKTNERGQMI   79 (448)
Q Consensus         4 ~g~~-t~ggT~an~~al~~a~~~~~~~~~~~G~~~~~~~~Vl~~~~~H~s-~~~~~~~~--g~~~~~v~~v~~~~~g~id   79 (448)
                      .++| |+|||+++..++.+..+              ++ +++++...|.. ....+...  |.   +++.++.+++...+
T Consensus        98 ~i~~~t~g~t~al~~~~~~l~~--------------~g-v~~v~~~~~~~~~~~~~~~~~~g~---~~~~v~~~~g~~~~  159 (398)
T 2fyf_A           98 EVILGNGGATAFWDAAAFGLID--------------KR-SLHLTYGEFSAKFASAVSKNPFVG---EPIIITSDPGSAPE  159 (398)
T ss_dssp             EEEEEETCHHHHHHHHHHHTCS--------------SC-EEEEECSHHHHHHHHHHHHCTTSC---CCEEEECCTTCCCC
T ss_pred             eEEEeCCchhHHHHHHHHHhcC--------------CC-eEEEeCCHHHHHHHHHHHHhCCCC---ceEEEecCCCCCCC
Confidence            4677 99999999888876532              44 23335556643 23345555  44   57788887333333


Q ss_pred             HHHHHHHHHHhhhcCCCcEEEEEeccCCccccccCHHHHHHHHHHcCCEEEEecccccccccccchhhhhcCCCCccEEE
Q psy14299         80 CSFLEQTIQTSLAEKKIPLFVNATAGTTVLGAFDPLDEIATVCEKYDLWMHVDACWGGSLIFSEKYSFVLKGINRANSVS  159 (448)
Q Consensus        80 ~e~Le~~l~~~~~~~~~~~lVv~~~~~t~tG~~~~l~~I~~ia~~~g~~l~VD~A~~~~~~~~~~~~~~~~~~~~aD~~~  159 (448)
                      . +    +      ..++++|++++++|++|.+.|+++|.++   +|+++|+|++|+.+..+.+.     .   .+|+++
T Consensus       160 ~-~----i------~~~~~~v~~~~~~nptG~~~~~~~i~~~---~~~~vivD~a~~~~~~~~~~-----~---~~di~~  217 (398)
T 2fyf_A          160 P-Q----T------DPSVDVIAWAHNETSTGVAVAVRRPEGS---DDALVVIDATSGAGGLPVDI-----A---ETDAYY  217 (398)
T ss_dssp             C-C----C------CTTCSEEEEESEETTTTEECCCCCCTTC---C-CEEEEECTTTTTTSCCCG-----G---GCSEEE
T ss_pred             c-c----c------cCCCCEEEEeCcCCCcceecchHHhhhh---cCCeEEEEeccccCCcccCc-----c---cCcEEE
Confidence            2 1    2      1357899999999999999999999987   89999999999987654321     1   368999


Q ss_pred             ECCccccCCCCceEEEEEeccchhhhhccC------CcccccccCcccccccCCCCCcccCCCCchhHHHHHHHHHhChH
Q psy14299        160 WNPHKMLGAPLQCSILLIKEKGLLHQANAT------AATYLFQQDKFYDVSFDTGDKSVQCGRKVDAFKLWLMWKARGNL  233 (448)
Q Consensus       160 ~s~hK~l~~P~g~G~l~vr~~~~~~~~~~~------~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~  233 (448)
                      .++||+++.|.|+|+++++++ .+......      .++|+....                                   
T Consensus       218 ~s~sK~~~~~gg~g~l~~~~~-~~~~l~~~~~~~~~~~~~~~~~~-----------------------------------  261 (398)
T 2fyf_A          218 FAPQKNFASDGGLWLAIMSPA-ALSRIEAIAATGRWVPDFLSLPI-----------------------------------  261 (398)
T ss_dssp             ECTTSTTCSCSSEEEEEECHH-HHHHHHHHHHTTCCCCGGGCHHH-----------------------------------
T ss_pred             EecCcccCCCCceEEEEECHH-HHHHhhcccccCCCCCcEEehHH-----------------------------------
Confidence            999999998878999888664 33322110      011111000                                   


Q ss_pred             HHHHHHHHhhhhccCCCccchhhhhhhhhhhhhhhhhhhhhhhccccccccccCCCCCccccccchhhHHHHHHHHHhcC
Q psy14299        234 GFRHFVDNAVDCSRGSMTFSTLLCFDLQGLLHQANATAATYLFQQDKFYDVSFDTGDKSVQCGRKVDAFKLWLMWKARGN  313 (448)
Q Consensus       234 g~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  313 (448)
                       .....    .                                            .+....+.+...+.++..+++....
T Consensus       262 -~~~~~----~--------------------------------------------~~~~~~t~~~~~~~a~~~al~~~~~  292 (398)
T 2fyf_A          262 -AVENS----L--------------------------------------------KNQTYNTPAIATLALLAEQIDWLVG  292 (398)
T ss_dssp             -HHHHH----T--------------------------------------------TTCCSSCCCHHHHHHHHHHHHHHHH
T ss_pred             -Hhhhc----c--------------------------------------------cCCCCCCCCHHHHHHHHHHHHHHHH
Confidence             00000    0                                            0001112233445556667777666


Q ss_pred             cc-HHHHHHHHHHHHHHHHHHhhcCCCeEEecc-CC--cee-eEEEEeeccCCCccccchhhhhhhhhhhHHHHHHHHhC
Q psy14299        314 LG-FRHFVDNAVDCSRYFLSQISQRPGFRLVIP-EF--QCT-NICFWFIPVSLRDKVEDETWWSTLSKVAPRIKEKLVLG  388 (448)
Q Consensus       314 ~G-~~~~~~~~~~l~~~~~~~L~~~pg~~l~~~-~~--~~~-~v~f~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~L~~~  388 (448)
                      +| ++++.++..++++++.+.|+++||++++ . ++  ..+ ++.|.+ |.+++               ..++.+.|.++
T Consensus       293 ~g~~~~~~~~~~~~~~~l~~~L~~~~g~~~~-~~~~~~~~~~~~~~~~-~~~~~---------------~~~l~~~L~~~  355 (398)
T 2fyf_A          293 NGGLDWAVKRTADSSQRLYSWAQERPYTTPF-VTDPGLRSQVVGTIDF-VDDVD---------------AGTVAKILRAN  355 (398)
T ss_dssp             HTSHHHHHHHHHHHHHHHHHHHHHSTTEEES-CCSGGGBCSSEEEEEE-CTTSC---------------HHHHHHHHHHT
T ss_pred             ccCHHHHHHHHHHHHHHHHHHHHHcCCceec-cCChhhcCCcEEEEEC-CCCCC---------------HHHHHHHHHHC
Confidence            66 9999999999999999999999999986 3 23  345 555554 22222               23788899999


Q ss_pred             CcEEEEeeecCCcccccEEEEEecCCCCCCHHHHHHHHHHHHHHHHH
Q psy14299        389 GTLMIGYQPLQHRNLHNFFRLVTTCHPASSRQDMDYAIDQIELRGAE  435 (448)
Q Consensus       389 g~~~~~~~~~~g~~~~~~lRis~~~~~~~t~edid~l~~al~~~~~~  435 (448)
                      |+. +.++ ... ..++++|+|+  +.++|++|+++++++|+++.++
T Consensus       356 gI~-v~~g-~~~-~~~~~iRis~--~~~~t~e~i~~~~~~l~~~l~~  397 (398)
T 2fyf_A          356 GIV-DTEP-YRK-LGRNQLRVAM--FPAVEPDDVSALTECVDWVVER  397 (398)
T ss_dssp             TCB-CCSC-CTT-TCSSEEEEEC--CTTSCHHHHHHHHHHHHHHHHT
T ss_pred             CcE-EecC-ccc-CCCCEEEEEe--cCCCCHHHHHHHHHHHHHHHHh
Confidence            844 3332 111 1137899999  5789999999999999988654

>1pff_A Methionine gamma-lyase; homocysteine; 2.50A {Trichomonas vaginalis} SCOP: c.67.1.3

Probab=99.83  E-value=1.4e-19  Score=178.35  Aligned_cols=147  Identities=8%  Similarity=0.013  Sum_probs=116.8

Q ss_pred             cEEEeCcHHHHHHHHHHHHHHhcCCcccccCCCCCCCeEEEecCCCchHHHHHH----HHhCCCCCcEEEEecCCCCCcC
Q psy14299          4 KPFLLPGGSISNMYSICLARYRLDPDTKRKGLSHLPPLCMFTSEDSHYSMLKAA----HWLGIGMDNVIRVKTNERGQMI   79 (448)
Q Consensus         4 ~g~~t~ggT~an~~al~~a~~~~~~~~~~~G~~~~~~~~Vl~~~~~H~s~~~~~----~~~g~~~~~v~~v~~~~~g~id   79 (448)
                      ..+++++||+++..++.+...              +++.|+++..+|.++...+    +..|.   +++.++.     +|
T Consensus        15 ~~i~~~sG~~a~~~~~~~~~~--------------~g~~v~~~~~~~~~~~~~~~~~~~~~g~---~~~~~~~-----~d   72 (331)
T 1pff_A           15 ACAATASGMGAIAASVWTFLK--------------AGDHLISDDCLYGCTHALFEHQLRKFGV---EVDFIDM-----AV   72 (331)
T ss_dssp             EEEEESSHHHHHHHHHHHHCC--------------TTCEEEEESCCCHHHHHHHHTHHHHTTC---EEEEECT-----TS
T ss_pred             eEEEeCChHHHHHHHHHHhcC--------------CCCEEEEcCCCcchHHHHHHHHHHhcCC---EEEEeCC-----CC
Confidence            467788889999888876532              5667889999999987775    34566   6777775     48


Q ss_pred             HHHHHHHHHHhhhcCCCcEEEEEeccCCccccccCHHHHHHHHHH-cCCEEEEecccccccccccchhhhhcCCCCccEE
Q psy14299         80 CSFLEQTIQTSLAEKKIPLFVNATAGTTVLGAFDPLDEIATVCEK-YDLWMHVDACWGGSLIFSEKYSFVLKGINRANSV  158 (448)
Q Consensus        80 ~e~Le~~l~~~~~~~~~~~lVv~~~~~t~tG~~~~l~~I~~ia~~-~g~~l~VD~A~~~~~~~~~~~~~~~~~~~~aD~~  158 (448)
                      ++++++++++      ++++|++++++|++|.+.|+++|.++|++ ||+++++|++|+.+....+.     .  ..+|++
T Consensus        73 ~~~l~~~i~~------~~~~v~~~~~~nptG~~~~~~~i~~~~~~~~~~~li~D~a~~~~~~~~~~-----~--~~~d~~  139 (331)
T 1pff_A           73 PGNIEKHLKP------NTRIVYFETPANPTLKVIDIEDAVKQARKQKDILVIVDNTFASPILTNPL-----D--LGVDIV  139 (331)
T ss_dssp             TTHHHHTCCT------TEEEEEEESSCTTTCCCCCHHHHHHHHTTSSSCEEEEECTTTHHHHCCGG-----G--GTCSEE
T ss_pred             HHHHHHhhcC------CCeEEEEECCCCCcCcccCHHHHHHHHhhhcCCEEEEECCCcccccCChh-----h--cCCcEE
Confidence            8999988853      57899999999999999999999999999 99999999999977653221     1  137999


Q ss_pred             EECCccccCCCCc--eEEEEEeccchhhh
Q psy14299        159 SWNPHKMLGAPLQ--CSILLIKEKGLLHQ  185 (448)
Q Consensus       159 ~~s~hK~l~~P~g--~G~l~vr~~~~~~~  185 (448)
                      +.|+||++++|.+  .|+++.+++++...
T Consensus       140 ~~s~~K~~~~~~~r~~G~~~~~~~~~~~~  168 (331)
T 1pff_A          140 VHSATKYINGHTDVVAGLVCSRADIIAKV  168 (331)
T ss_dssp             EEETTTTTSSSSSCCCEEEEECHHHHHHH
T ss_pred             EEECccccCCCCCceEEEEEeCcHHHHHH
Confidence            9999999999988  78888766344433

>3tcm_A Alanine aminotransferase 2; pyridoxal phosphate (PLP)-binding; HET: DCS; 2.71A {Hordeum vulgare}

Probab=99.83  E-value=4.9e-19  Score=185.22  Aligned_cols=158  Identities=10%  Similarity=0.021  Sum_probs=118.9

Q ss_pred             cEEEeCcHHHHHHHHHHHHHHhcCCcccccCCCCCCCeEEEecCCCchHHHHHHHHhCCCCCcEEEEecCCC--CCcCHH
Q psy14299          4 KPFLLPGGSISNMYSICLARYRLDPDTKRKGLSHLPPLCMFTSEDSHYSMLKAAHWLGIGMDNVIRVKTNER--GQMICS   81 (448)
Q Consensus         4 ~g~~t~ggT~an~~al~~a~~~~~~~~~~~G~~~~~~~~Vl~~~~~H~s~~~~~~~~g~~~~~v~~v~~~~~--g~id~e   81 (448)
                      ..++|+|+|+++.+++.+....             +++.|+++...|.++..+++..|.   +++.++.+++  +.+|++
T Consensus       159 ~i~~t~G~~~al~~~~~~l~~~-------------~gd~Vlv~~p~y~~~~~~~~~~g~---~~~~~~~~~~~~~~~d~~  222 (500)
T 3tcm_A          159 DIFLTDGASPGVHLMMQLLIRN-------------EKDGILVPIPQYPLYSASIALHGG---ALVPYYLNESTGWGLETS  222 (500)
T ss_dssp             GEEEESSSHHHHHHHHHHHCCS-------------TTEEEEEEESCCTHHHHHHHHTTC---EEEEEECBTTTTSBCCHH
T ss_pred             cEEEcCCHHHHHHHHHHHHcCC-------------CCCEEEEeCCCcHhHHHHHHHcCC---EEEEEecccccCCCCCHH
Confidence            5789999999998888776422             678899999999999999999998   7888988764  589999


Q ss_pred             HHHHHHHHhhhcCCCcEEEEEeccCCccccccC---HHHHHHHHHHcCCEEEEeccccccccccc----chhhhhcCC--
Q psy14299         82 FLEQTIQTSLAEKKIPLFVNATAGTTVLGAFDP---LDEIATVCEKYDLWMHVDACWGGSLIFSE----KYSFVLKGI--  152 (448)
Q Consensus        82 ~Le~~l~~~~~~~~~~~lVv~~~~~t~tG~~~~---l~~I~~ia~~~g~~l~VD~A~~~~~~~~~----~~~~~~~~~--  152 (448)
                      +|+++|++....+.++++|++++++|+||.+.+   +++|+++|++||+++++|++|+...+...    ........+  
T Consensus       223 ~l~~~l~~~~~~~~~~k~ivl~~p~NPtG~~~s~~~l~~i~~la~~~~~~li~Deay~~~~~~~~~~~~s~~~~~~~~~~  302 (500)
T 3tcm_A          223 DVKKQLEDARSRGINVRALVVINPGNPTGQVLAEENQYDIVKFCKNEGLVLLADEVYQENIYVDNKKFHSFKKIVRSLGY  302 (500)
T ss_dssp             HHHHHHHHHHHTTCEEEEEEEESSCTTTCCCCCHHHHHHHHHHHHHHTCEEEEECTTTTCBCCTTCCCCCHHHHHHHTTC
T ss_pred             HHHHHHHHHHhcCCCceEEEEECCCCCCcccCCHHHHHHHHHHHHHcCCEEEEecCccccccCCCCCCCcHHHHHHHhcc
Confidence            999999876555557889999999999998855   67777789999999999999987554211    111001111  


Q ss_pred             --CCcc-EEEECCccccCCCCc--eEEEEE
Q psy14299        153 --NRAN-SVSWNPHKMLGAPLQ--CSILLI  177 (448)
Q Consensus       153 --~~aD-~~~~s~hK~l~~P~g--~G~l~v  177 (448)
                        ...+ ++..|++|.+.+++|  +|++.+
T Consensus       303 ~~~~~~~i~~~S~SK~~~g~~G~R~G~~~~  332 (500)
T 3tcm_A          303 GEEDLPLVSYQSVSKGYYGECGKRGGYFEI  332 (500)
T ss_dssp             SSSCCCEEEEEESSSTTTCCGGGCCEEEEE
T ss_pred             ccCCeEEEEEecCCccCCCCCccceEEEEE
Confidence              1122 445589999844444  566665

>2x5f_A Aspartate_tyrosine_phenylalanine pyridoxal-5' phosphate-dependent aminotransferase...; HET: PLP EPE; 1.80A {Staphylococcus aureus}

Probab=99.83  E-value=8.3e-19  Score=179.22  Aligned_cols=153  Identities=12%  Similarity=0.005  Sum_probs=118.6

Q ss_pred             EEEeCcHHHHHHHHHHHHHHhcCCcccccCCCCCCCeEEEecCCCchHHHHHHHH-hCCCCCcEEEEecCC-CCCcCHHH
Q psy14299          5 PFLLPGGSISNMYSICLARYRLDPDTKRKGLSHLPPLCMFTSEDSHYSMLKAAHW-LGIGMDNVIRVKTNE-RGQMICSF   82 (448)
Q Consensus         5 g~~t~ggT~an~~al~~a~~~~~~~~~~~G~~~~~~~~Vl~~~~~H~s~~~~~~~-~g~~~~~v~~v~~~~-~g~id~e~   82 (448)
                      .++|+|||+++..++.+...              +++.|+++...|.++...++. .|.   +++.+|.++ ++.+|+++
T Consensus       116 i~~t~g~~~al~~~~~~l~~--------------~gd~Vl~~~p~y~~~~~~~~~~~g~---~~~~~~~~~~~~~~d~~~  178 (430)
T 2x5f_A          116 PIVTNALTHGLSLVGDLFVN--------------QDDTILLPEHNWGNYKLVFNTRNGA---NLQTYPIFDKDGHYTTDS  178 (430)
T ss_dssp             CEEESHHHHHHHHHHHHHCC--------------TTCEEEEESSCCTHHHHHHTTTTCC---EEEEECCBCTTSCBCSHH
T ss_pred             EEEcCCchHHHHHHHHHHhC--------------CCCEEEEcCCcCccHHHHHHHhcCC---eEEEEeccCccCCcCHHH
Confidence            79999999999888876643              567788999999999999888 887   788888865 46899999


Q ss_pred             HHHHHHHhhhcCCCcEEEEEeccCCccccccC---HHHHHHHHHH-----cCCEEEEecccccccccccch-h-h-hhcC
Q psy14299         83 LEQTIQTSLAEKKIPLFVNATAGTTVLGAFDP---LDEIATVCEK-----YDLWMHVDACWGGSLIFSEKY-S-F-VLKG  151 (448)
Q Consensus        83 Le~~l~~~~~~~~~~~lVv~~~~~t~tG~~~~---l~~I~~ia~~-----~g~~l~VD~A~~~~~~~~~~~-~-~-~~~~  151 (448)
                      |++++++.   +.++++|++++++|+||.+.|   +++|.++|++     ||+++++|++|+......... . . .+.+
T Consensus       179 l~~~l~~~---~~~~~~v~i~~p~nptG~~~~~~~l~~i~~~~~~~~~~~~~~~li~De~~~~~~~~~~~~~~~~~~~~~  255 (430)
T 2x5f_A          179 LVEALQSY---NKDKVIMILNYPNNPTGYTPTHKEVTTIVEAIKALANKGTKVIAVVDDAYYGLFYEDVYTQSLFTALTN  255 (430)
T ss_dssp             HHHHHHHC---CSSEEEEEECSSCTTTCCCCCHHHHHHHHHHHHHHHHTTCEEEEEEECTTTTCBCSSSCCSCHHHHHHT
T ss_pred             HHHHHHhc---CCCCEEEEEcCCCCCCCCcCCHHHHHHHHHHHHhhhhccCCEEEEEehhcccccCCcccchHHHHHHhh
Confidence            99999752   235789999999999999988   8999999999     999999999998654321100 1 0 1222


Q ss_pred             CCCc---cEEEECCccccCCCC-ceEEEEE
Q psy14299        152 INRA---NSVSWNPHKMLGAPL-QCSILLI  177 (448)
Q Consensus       152 ~~~a---D~~~~s~hK~l~~P~-g~G~l~v  177 (448)
                      ....   ++++.++||+++.|. .+|++++
T Consensus       256 ~~~~~~~~i~~~s~sK~~~~~G~riG~~~~  285 (430)
T 2x5f_A          256 LHSNAILPIRLDGATKEFFAWGFRVGFMTF  285 (430)
T ss_dssp             TCCTTEEEEEEEEHHHHTTCGGGCCEEEEE
T ss_pred             ccCCcceEEEEEecccCCCCCCCCeEEEEE
Confidence            2233   577889999997552 3688887

>1cs1_A CGS, protein (cystathionine gamma-synthase); lyase, LLP-dependent enzymes, methionine biosynthesis; HET: LLP DHD; 1.50A {Escherichia coli} SCOP: c.67.1.3

Probab=99.83  E-value=1.7e-18  Score=174.62  Aligned_cols=144  Identities=13%  Similarity=0.058  Sum_probs=114.3

Q ss_pred             cEEEeCcHHHHHHHHHHHHHHhcCCcccccCCCCCCCeEEEecCCCchHHHHHH----HHhCCCCCcEEEEecCCCCCcC
Q psy14299          4 KPFLLPGGSISNMYSICLARYRLDPDTKRKGLSHLPPLCMFTSEDSHYSMLKAA----HWLGIGMDNVIRVKTNERGQMI   79 (448)
Q Consensus         4 ~g~~t~ggT~an~~al~~a~~~~~~~~~~~G~~~~~~~~Vl~~~~~H~s~~~~~----~~~g~~~~~v~~v~~~~~g~id   79 (448)
                      ..+++++||+++..++..+..              +++.|+++..+|.++....    +..|.   ++..++.+     |
T Consensus        69 ~~i~~~sGt~a~~~~~~~~~~--------------~g~~vl~~~~~~~~~~~~~~~~~~~~g~---~~~~~~~~-----d  126 (386)
T 1cs1_A           69 GAVLTNTGMSAIHLVTTVFLK--------------PGDLLVAPHDCYGGSYRLFDSLAKRGCY---RVLFVDQG-----D  126 (386)
T ss_dssp             EEEEESSHHHHHHHHHHHHCC--------------TTCEEEEETTCCHHHHHHHHHHHTTTSC---EEEEECTT-----C
T ss_pred             cEEEeCCHHHHHHHHHHHHhC--------------CCCEEEEecCCcHhHHHHHHHHHHhcCC---EEEEeCCC-----C
Confidence            356667779999988876632              5667888999999876654    33455   67778764     8


Q ss_pred             HHHHHHHHHHhhhcCCCcEEEEEeccCCccccccCHHHHHHHHHHcCCEEEEecccccccccccchhhhhcCCCCccEEE
Q psy14299         80 CSFLEQTIQTSLAEKKIPLFVNATAGTTVLGAFDPLDEIATVCEKYDLWMHVDACWGGSLIFSEKYSFVLKGINRANSVS  159 (448)
Q Consensus        80 ~e~Le~~l~~~~~~~~~~~lVv~~~~~t~tG~~~~l~~I~~ia~~~g~~l~VD~A~~~~~~~~~~~~~~~~~~~~aD~~~  159 (448)
                      +++|++++++      ++++|++++++|++|.+.|+++|.++|++||+++++|++|+.+....+.     . . .+|+++
T Consensus       127 ~~~l~~~i~~------~~~~v~~~~~~nptG~~~~l~~i~~l~~~~~~~li~De~~~~~~~~~~~-----~-~-~~di~~  193 (386)
T 1cs1_A          127 EQALRAALAE------KPKLVLVESPSNPLLRVVDIAKICHLAREVGAVSVVDNTFLSPALQNPL-----A-L-GADLVL  193 (386)
T ss_dssp             HHHHHHHHHT------CCSEEEEECSCTTTCCCCCHHHHHHHHHHTTCEEEEECTTTCTTTCCGG-----G-G-TCSEEE
T ss_pred             HHHHHHhhcc------CCcEEEEeCCCCCCCcccCHHHHHHHHHHcCCEEEEECCCcccccCCcc-----c-c-CceEEE
Confidence            9999999964      4789999999999999999999999999999999999999987653221     1 1 479999


Q ss_pred             ECCccccCCCCce--EEEEEeccch
Q psy14299        160 WNPHKMLGAPLQC--SILLIKEKGL  182 (448)
Q Consensus       160 ~s~hK~l~~P~g~--G~l~vr~~~~  182 (448)
                      .++||++++|.+.  |+++++++++
T Consensus       194 ~s~sK~~~~~~~~~~G~~~~~~~~l  218 (386)
T 1cs1_A          194 HSCTKYLNGHSDVVAGVVIAKDPDV  218 (386)
T ss_dssp             EETTTTTTCSSCCCCEEEEESSHHH
T ss_pred             EcCcccccCCCCceeEEEEeCcHHH
Confidence            9999999999874  8888866343

>3ele_A Amino transferase; RER070207001803, structural genomics, JOI for structural genomics, JCSG; HET: MSE PLP; 2.10A {Eubacterium rectale}

Probab=99.83  E-value=1.2e-18  Score=175.89  Aligned_cols=153  Identities=14%  Similarity=0.093  Sum_probs=120.4

Q ss_pred             cEEEeCcHHHHHHHHHHHHHHhcCCcccccCCCCCCC-eEEEecCCCchHHHHHHHHhCCCCCcEEEEecCC-CCCcCHH
Q psy14299          4 KPFLLPGGSISNMYSICLARYRLDPDTKRKGLSHLPP-LCMFTSEDSHYSMLKAAHWLGIGMDNVIRVKTNE-RGQMICS   81 (448)
Q Consensus         4 ~g~~t~ggT~an~~al~~a~~~~~~~~~~~G~~~~~~-~~Vl~~~~~H~s~~~~~~~~g~~~~~v~~v~~~~-~g~id~e   81 (448)
                      ..++|+|||+++..++.++..              ++ +.|+++...|.++...++..|.   +++.+|.++ ++.+|++
T Consensus       101 ~i~~~~g~~~al~~~~~~l~~--------------~g~d~vl~~~p~~~~~~~~~~~~g~---~~~~v~~~~~~~~~d~~  163 (398)
T 3ele_A          101 NLYMTMGAAASLSICFRALTS--------------DAYDEFITIAPYFPEYKVFVNAAGA---RLVEVPADTEHFQIDFD  163 (398)
T ss_dssp             GEEEESSHHHHHHHHHHHHCC--------------STTCEEEEESSCCTHHHHHHHHTTC---EEEEECCCTTTSSCCHH
T ss_pred             HEEEccCHHHHHHHHHHHHcC--------------CCCCEEEEeCCCchhhHHHHHHcCC---EEEEEecCCcCCcCCHH
Confidence            578999999999988877643              56 7788999999999999999998   799999875 4689999


Q ss_pred             HHHHHHHHhhhcCCCcEEEEEeccCCccccccC---HHHHHHHHHH------cCCEEEEecccccccccccchhhhhcCC
Q psy14299         82 FLEQTIQTSLAEKKIPLFVNATAGTTVLGAFDP---LDEIATVCEK------YDLWMHVDACWGGSLIFSEKYSFVLKGI  152 (448)
Q Consensus        82 ~Le~~l~~~~~~~~~~~lVv~~~~~t~tG~~~~---l~~I~~ia~~------~g~~l~VD~A~~~~~~~~~~~~~~~~~~  152 (448)
                      +|++++++      ++++|++++++|+||.+.|   +++|+++|++      ||+++++|++|+............. ..
T Consensus       164 ~l~~~l~~------~~~~v~~~~p~nptG~~~~~~~l~~l~~~~~~~~~~~~~~~~li~De~~~~~~~~~~~~~~~~-~~  236 (398)
T 3ele_A          164 ALEERINA------HTRGVIINSPNNPSGTVYSEETIKKLSDLLEKKSKEIGRPIFIIADEPYREIVYDGIKVPFVT-KY  236 (398)
T ss_dssp             HHHHTCCT------TEEEEEECSSCTTTCCCCCHHHHHHHHHHHHHHHHHHTSCCEEEEECTTTTCBCTTCCCCCGG-GT
T ss_pred             HHHHHhCc------CCCEEEEcCCCCCCCCCCCHHHHHHHHHHHHhhhhccCCCeEEEEeccccccccCCCCcCChH-hh
Confidence            99999854      5889999999999999988   7777799999      9999999999987543211111111 11


Q ss_pred             CCccEEEECCccccC-CCCceEEEEEecc
Q psy14299        153 NRANSVSWNPHKMLG-APLQCSILLIKEK  180 (448)
Q Consensus       153 ~~aD~~~~s~hK~l~-~P~g~G~l~vr~~  180 (448)
                      ...++++.+++|+++ ....+|+++++++
T Consensus       237 ~~~~i~~~s~sK~~~~~G~r~G~~~~~~~  265 (398)
T 3ele_A          237 YDNTLVCYSYSKSLSLPGERIGYVLVPDE  265 (398)
T ss_dssp             CSSEEEEEESTTTSSCTTTCCEEEECCTT
T ss_pred             cCCeEEEEehhhcCCCccceeEEEEEcch
Confidence            235688889999997 4456888877654

>2po3_A 4-dehydrase; external aldimine, PLP, aminotransferase, TDP-sugar; HET: T4K; 2.10A {Streptomyces venezuelae}

Probab=99.82  E-value=1.5e-18  Score=177.19  Aligned_cols=148  Identities=11%  Similarity=0.108  Sum_probs=114.7

Q ss_pred             cEEEeCcHHHHHHHHHHHHHHhcCCcccccCCCCCCCeEEEecCCCchHHHHHHHHhCCCCCcEEEEecCC-CCCcCHHH
Q psy14299          4 KPFLLPGGSISNMYSICLARYRLDPDTKRKGLSHLPPLCMFTSEDSHYSMLKAAHWLGIGMDNVIRVKTNE-RGQMICSF   82 (448)
Q Consensus         4 ~g~~t~ggT~an~~al~~a~~~~~~~~~~~G~~~~~~~~Vl~~~~~H~s~~~~~~~~g~~~~~v~~v~~~~-~g~id~e~   82 (448)
                      .+++|+|||+++..++.++.               +++.|+++..+|.++..+++..|.   +++.++.++ ++.+|+++
T Consensus        69 ~v~~~~ggt~al~~~l~~l~---------------~gd~Vlv~~~~~~~~~~~~~~~G~---~~~~v~~~~~~~~~d~~~  130 (424)
T 2po3_A           69 HAVATCNATAGLQLLAHAAG---------------LTGEVIMPSMTFAATPHALRWIGL---TPVFADIDPDTGNLDPDQ  130 (424)
T ss_dssp             EEEEESCHHHHHHHHHHHHT---------------CCSEEEEESSSCTHHHHHHHHTTC---EEEEECBCTTTSSBCHHH
T ss_pred             eEEEeCCHHHHHHHHHHHcC---------------CCCEEEECCCccHHHHHHHHHcCC---EEEEEecCCCcCCcCHHH
Confidence            47999999999998887652               235788999999999999999998   788999886 67899999


Q ss_pred             HHHHHHHhhhcCCCcEEEEEeccCCccccccCHHHHHHHHHHcCCEEEEecccccccccccchhhhhcCCCCccEEEECC
Q psy14299         83 LEQTIQTSLAEKKIPLFVNATAGTTVLGAFDPLDEIATVCEKYDLWMHVDACWGGSLIFSEKYSFVLKGINRANSVSWNP  162 (448)
Q Consensus        83 Le~~l~~~~~~~~~~~lVv~~~~~t~tG~~~~l~~I~~ia~~~g~~l~VD~A~~~~~~~~~~~~~~~~~~~~aD~~~~s~  162 (448)
                      |++++++      ++++|++++   ++|...|+++|.++|++||+++++|++|+.+...... .  +..  ..|+++.|+
T Consensus       131 l~~~i~~------~~~~v~~~~---~tG~~~~l~~i~~la~~~~~~li~Dea~~~g~~~~~~-~--~~~--~~di~~~S~  196 (424)
T 2po3_A          131 VAAAVTP------RTSAVVGVH---LWGRPCAADQLRKVADEHGLRLYFDAAHALGCAVDGR-P--AGS--LGDAEVFSF  196 (424)
T ss_dssp             HGGGCCT------TEEEEEEEC---GGGCCCCHHHHHHHHHHTTCEEEEECTTCTTCEETTE-E--TTS--SSSEEEEEC
T ss_pred             HHHhhCc------CCcEEEEEC---CCCCcCCHHHHHHHHHHcCCEEEEECccccCCeECCe-e--ccc--ccCEEEEeC
Confidence            9998853      477887754   7999999999999999999999999999965542111 1  111  247777777


Q ss_pred             c--cccCCCCceEEEEEeccchhh
Q psy14299        163 H--KMLGAPLQCSILLIKEKGLLH  184 (448)
Q Consensus       163 h--K~l~~P~g~G~l~vr~~~~~~  184 (448)
                      |  |++++ ...|+++.+++++..
T Consensus       197 sk~K~l~~-~~~G~~v~~~~~l~~  219 (424)
T 2po3_A          197 HATKAVNA-FEGGAVVTDDADLAA  219 (424)
T ss_dssp             CTTSSSCC-SSCEEEEESCHHHHH
T ss_pred             CCCCCccC-CCCeEEEeCCHHHHH
Confidence            6  88876 556777665444433

>3nyt_A Aminotransferase WBPE; PLP binding, nucleotide-sugar binding; HET: ULP; 1.30A {Pseudomonas aeruginosa} PDB: 3nys_A* 3nyu_A* 3nu8_A* 3nu7_A* 3nub_A*

Probab=99.82  E-value=8.9e-20  Score=182.66  Aligned_cols=150  Identities=15%  Similarity=0.097  Sum_probs=118.2

Q ss_pred             cEEEeCcHHHHHHHHHHHHHHhcCCcccccCCCCCCCeEEEecCCCchHHHHHHHHhCCCCCcEEEEecCCC-CCcCHHH
Q psy14299          4 KPFLLPGGSISNMYSICLARYRLDPDTKRKGLSHLPPLCMFTSEDSHYSMLKAAHWLGIGMDNVIRVKTNER-GQMICSF   82 (448)
Q Consensus         4 ~g~~t~ggT~an~~al~~a~~~~~~~~~~~G~~~~~~~~Vl~~~~~H~s~~~~~~~~g~~~~~v~~v~~~~~-g~id~e~   82 (448)
                      .+++|+|||+|+..++.+++.             .+++.|+++..+|.++..+++..|.   +++.++.+++ +.+|+++
T Consensus        52 ~~~~~~sGt~al~~al~~~~~-------------~~gd~Vi~~~~~~~~~~~~~~~~G~---~~~~~~~~~~~~~~d~~~  115 (367)
T 3nyt_A           52 YCISCANGTDALQIVQMALGV-------------GPGDEVITPGFTYVATAETVALLGA---KPVYVDIDPRTYNLDPQL  115 (367)
T ss_dssp             EEEEESCHHHHHHHHHHHTTC-------------CTTCEEEEESSSCTHHHHHHHHTTC---EEEEECBCTTTCSBCGGG
T ss_pred             cEEEeCCHHHHHHHHHHHhCC-------------CCcCEEEECCCccHHHHHHHHHcCC---EEEEEecCCccCCcCHHH
Confidence            579999999999998877532             2677899999999999999999998   7899998875 8999999


Q ss_pred             HHHHHHHhhhcCCCcEEEEEeccCCccccccCHHHHHHHHHHcCCEEEEecccccccccccchhhhhcCCCCccEEEEC-
Q psy14299         83 LEQTIQTSLAEKKIPLFVNATAGTTVLGAFDPLDEIATVCEKYDLWMHVDACWGGSLIFSEKYSFVLKGINRANSVSWN-  161 (448)
Q Consensus        83 Le~~l~~~~~~~~~~~lVv~~~~~t~tG~~~~l~~I~~ia~~~g~~l~VD~A~~~~~~~~~~~~~~~~~~~~aD~~~~s-  161 (448)
                      |++++++      ++++|+   +++++|...|+++|.++|++||+++|+|++|+.+.......   ....  .|++++| 
T Consensus       116 l~~~i~~------~~~~v~---~~~~~G~~~~~~~i~~la~~~~~~li~D~a~~~g~~~~~~~---~~~~--~di~~~Sf  181 (367)
T 3nyt_A          116 LEAAITP------RTKAII---PVSLYGQCADFDAINAIASKYGIPVIEDAAQSFGASYKGKR---SCNL--STVACTSF  181 (367)
T ss_dssp             TGGGCCT------TEEEEC---CBCGGGCCCCHHHHHHHHHHTTCCBEEECTTTTTCEETTEE---TTSS--SSEEEEEC
T ss_pred             HHHhcCc------CCcEEE---eeCCccChhhHHHHHHHHHHcCCEEEEECccccCCeECCee---ccCC--CCEEEEEC
Confidence            9999853      466666   56789999999999999999999999999998766532111   1111  2788888 


Q ss_pred             -CccccCCCCceEEEEEeccchh
Q psy14299        162 -PHKMLGAPLQCSILLIKEKGLL  183 (448)
Q Consensus       162 -~hK~l~~P~g~G~l~vr~~~~~  183 (448)
                       +||+++++...|+++.+++.+.
T Consensus       182 ~~~K~l~~~g~gg~~~~~~~~l~  204 (367)
T 3nyt_A          182 FPSAPLGCYGDGGAIFTNDDELA  204 (367)
T ss_dssp             CTTSSSCCSSCCEEEEESCHHHH
T ss_pred             CCCCcCCCcCceeEEEeCCHHHH
Confidence             5899987555666666555443

>3qhx_A Cystathionine gamma-synthase METB (CGS); structural genomics, seattle structural genomics center for infectious disease, ssgcid, CGS_LIKE; HET: LLP EPE; 1.65A {Mycobacterium ulcerans} SCOP: c.67.1.0 PDB: 3qi6_A*

Probab=99.82  E-value=7.4e-19  Score=178.20  Aligned_cols=145  Identities=12%  Similarity=0.081  Sum_probs=116.2

Q ss_pred             cEEEeCcHHHHHHHHHHHHHHhcCCcccccCCCCCCCeEEEecCCCchHHHHHH----HHhCCCCCcEEEEecCCCCCcC
Q psy14299          4 KPFLLPGGSISNMYSICLARYRLDPDTKRKGLSHLPPLCMFTSEDSHYSMLKAA----HWLGIGMDNVIRVKTNERGQMI   79 (448)
Q Consensus         4 ~g~~t~ggT~an~~al~~a~~~~~~~~~~~G~~~~~~~~Vl~~~~~H~s~~~~~----~~~g~~~~~v~~v~~~~~g~id   79 (448)
                      .+++++|||+||..++..+..              +++.|+++...|.+....+    +..|.   ++..++.+     |
T Consensus        83 ~~~~~~sGt~A~~~al~~~~~--------------~gd~Vi~~~~~y~~~~~~~~~~~~~~g~---~~~~v~~~-----d  140 (392)
T 3qhx_A           83 FGRAFSSGMAAADCALRAMLR--------------PGDHVVIPDDAYGGTFRLIDKVFTGWNV---EYTPVALA-----D  140 (392)
T ss_dssp             EEEEESSHHHHHHHHHHHHCC--------------TTCEEEEETTCCHHHHHHHHHTGGGGTC---EEEEECTT-----C
T ss_pred             cEEEECCHHHHHHHHHHHHhC--------------CCCEEEEeCCCcchHHHHHHHHHHhcCc---EEEEeCCC-----C
Confidence            478999999999988876633              5667999999999887776    34455   68888875     8


Q ss_pred             HHHHHHHHHHhhhcCCCcEEEEEeccCCccccccCHHHHHHHHHHcCCEEEEecccccccccccchhhhhcCCCCccEEE
Q psy14299         80 CSFLEQTIQTSLAEKKIPLFVNATAGTTVLGAFDPLDEIATVCEKYDLWMHVDACWGGSLIFSEKYSFVLKGINRANSVS  159 (448)
Q Consensus        80 ~e~Le~~l~~~~~~~~~~~lVv~~~~~t~tG~~~~l~~I~~ia~~~g~~l~VD~A~~~~~~~~~~~~~~~~~~~~aD~~~  159 (448)
                      +++|++++++      ++++|++..++|++|.+.|+++|+++|++||+++|+|++|+.+....+ .     .. .+|+++
T Consensus       141 ~~~l~~~i~~------~~~~v~~~~~~nptG~~~~l~~i~~la~~~g~~li~D~~~~~~~~~~~-~-----~~-~~di~~  207 (392)
T 3qhx_A          141 LDAVRAAIRP------TTRLIWVETPTNPLLSIADIAGIAQLGADSSAKVLVDNTFASPALQQP-L-----SL-GADVVL  207 (392)
T ss_dssp             HHHHHHHCCT------TEEEEEEESSCTTTCCCCCHHHHHHHHHHHTCEEEEECTTTCTTTCCG-G-----GG-TCSEEE
T ss_pred             HHHHHHhhCC------CCeEEEEECCCCCCcEEecHHHHHHHHHHcCCEEEEECCCcccccCCh-H-----Hh-CCcEEE
Confidence            9999999864      588999999999999999999999999999999999999986643211 1     11 479999


Q ss_pred             ECCccccCCCCc--eEEEEEeccchh
Q psy14299        160 WNPHKMLGAPLQ--CSILLIKEKGLL  183 (448)
Q Consensus       160 ~s~hK~l~~P~g--~G~l~vr~~~~~  183 (448)
                      .|+||++++|.+  .|+++.+++.+.
T Consensus       208 ~S~sK~lg~~g~~~~G~v~~~~~~~~  233 (392)
T 3qhx_A          208 HSTTKYIGGHSDVVGGALVTNDEELD  233 (392)
T ss_dssp             EETTTTTTCSSCCCCEEEEESCHHHH
T ss_pred             EcCccccCCCCCceEEEEEECcHHHH
Confidence            999999997754  777777654443

>1gc0_A Methionine gamma-lyase; pyridoxal-5'-phosphate; HET: LLP; 1.70A {Pseudomonas putida} SCOP: c.67.1.3 PDB: 1gc2_A* 1pg8_A* 1ukj_A* 2o7c_A*

Probab=99.82  E-value=1.8e-18  Score=175.51  Aligned_cols=142  Identities=11%  Similarity=0.032  Sum_probs=115.7

Q ss_pred             cEEEeCcHHHHHHHHHHHHHHhcCCcccccCCCCCCCeEEEecCCCchHHHHHH----HHhCCCCCcEEEEecCCCCCcC
Q psy14299          4 KPFLLPGGSISNMYSICLARYRLDPDTKRKGLSHLPPLCMFTSEDSHYSMLKAA----HWLGIGMDNVIRVKTNERGQMI   79 (448)
Q Consensus         4 ~g~~t~ggT~an~~al~~a~~~~~~~~~~~G~~~~~~~~Vl~~~~~H~s~~~~~----~~~g~~~~~v~~v~~~~~g~id   79 (448)
                      ..+++++||++|..++.++..              +++.|+++...|.++...+    +..|+   ++..++.+     |
T Consensus        82 ~~i~~~sG~~a~~~~l~~~~~--------------~gd~vl~~~~~~~~~~~~~~~~~~~~g~---~~~~~~~~-----d  139 (398)
T 1gc0_A           82 AGLALASGMGAITSTLWTLLR--------------PGDEVLLGNTLYGCTFAFLHHGIGEFGV---KLRHVDMA-----D  139 (398)
T ss_dssp             EEEEESSHHHHHHHHHHHHCC--------------TTCEEEEESSCCSHHHHHHHHTGGGGTC---EEEEECTT-----C
T ss_pred             cEEEECCHHHHHHHHHHHHhc--------------CCCEEEEeCCCchhHHHHHHHHHHHcCC---EEEEECCC-----C
Confidence            468888999999988877633              5667899999999988876    34455   67777764     8


Q ss_pred             HHHHHHHHHHhhhcCCCcEEEEEeccCCccccccCHHHHHHHHHHcCCEEEEecccccccccccchhhhhcCCCCccEEE
Q psy14299         80 CSFLEQTIQTSLAEKKIPLFVNATAGTTVLGAFDPLDEIATVCEKYDLWMHVDACWGGSLIFSEKYSFVLKGINRANSVS  159 (448)
Q Consensus        80 ~e~Le~~l~~~~~~~~~~~lVv~~~~~t~tG~~~~l~~I~~ia~~~g~~l~VD~A~~~~~~~~~~~~~~~~~~~~aD~~~  159 (448)
                      ++++++++++      ++++|++++++|++|.+.|+++|.++|++||+++|+|++|+.+....+.      . ..+|+++
T Consensus       140 ~~~l~~~i~~------~~~~v~~~~~~nptG~~~~l~~i~~l~~~~~~~li~D~~~~~~~~~~~~------~-~~~d~~~  206 (398)
T 1gc0_A          140 LQALEAAMTP------ATRVIYFESPANPNMHMADIAGVAKIARKHGATVVVDNTYCTPYLQRPL------E-LGADLVV  206 (398)
T ss_dssp             HHHHHHHCCT------TEEEEEEESSCTTTCCCCCHHHHHHHHGGGTCEEEEECTTTHHHHCCGG------G-GTCSEEE
T ss_pred             HHHHHHhcCC------CCeEEEEECCCCCCcccccHHHHHHHHHHcCCEEEEECCCcccccCCch------h-hCceEEE
Confidence            9999998854      5889999999999999999999999999999999999999977653221      1 1479999


Q ss_pred             ECCccccCCCCc--eEEEEEecc
Q psy14299        160 WNPHKMLGAPLQ--CSILLIKEK  180 (448)
Q Consensus       160 ~s~hK~l~~P~g--~G~l~vr~~  180 (448)
                      .|+||++++|.+  .|+++.+++
T Consensus       207 ~S~sK~~~~~~~~~~G~l~~~~~  229 (398)
T 1gc0_A          207 HSATKYLSGHGDITAGIVVGSQA  229 (398)
T ss_dssp             EETTTTTTCSSSCCCEEEEECHH
T ss_pred             ECCccccCCCCCCeEEEEEEChH
Confidence            999999999987  688877654

>3hdo_A Histidinol-phosphate aminotransferase; PSI-II, histidinol-phosphate aminotrans structural genomics, protein structure initiative; 1.61A {Geobacter metallireducens gs-15}

Probab=99.82  E-value=5.3e-19  Score=176.28  Aligned_cols=270  Identities=10%  Similarity=0.049  Sum_probs=181.8

Q ss_pred             cEEEeCcHHHHHHHHHHHHHHhcCCcccccCCCCCCCeEEEecCCCchHHHHHHHHhCCCCCcEEEEecCCCCCcCHHHH
Q psy14299          4 KPFLLPGGSISNMYSICLARYRLDPDTKRKGLSHLPPLCMFTSEDSHYSMLKAAHWLGIGMDNVIRVKTNERGQMICSFL   83 (448)
Q Consensus         4 ~g~~t~ggT~an~~al~~a~~~~~~~~~~~G~~~~~~~~Vl~~~~~H~s~~~~~~~~g~~~~~v~~v~~~~~g~id~e~L   83 (448)
                      ..++|+|||+++..++.+...              +++.|+++...|.++...++..|.   +++.++.++++.+  +++
T Consensus        84 ~i~~t~g~~~al~~~~~~l~~--------------~gd~Vl~~~p~~~~~~~~~~~~g~---~~~~v~~~~~~~~--~~l  144 (360)
T 3hdo_A           84 WIIMANGSDEVLNNLIRAFAA--------------EGEEIGYVHPSYSYYGTLAEVQGA---RVRTFGLTGDFRI--AGF  144 (360)
T ss_dssp             GEEEESSHHHHHHHHHHHHCC--------------TTCEEEEESSSCTHHHHHHHHHTC---EEEEECBCTTSSB--TTC
T ss_pred             eEEEcCCHHHHHHHHHHHHhC--------------CCCEEEEcCCChHHHHHHHHHCCC---EEEEeeCCCCCCH--HHH
Confidence            579999999999888876533              567789999999999999999998   7899998877665  333


Q ss_pred             HHHHHHhhhcCCCcEEEEEeccCCccccccCHHHHHHHHHHcCCEEEEecccccccccccchhhhhcCCCCccEEEECCc
Q psy14299         84 EQTIQTSLAEKKIPLFVNATAGTTVLGAFDPLDEIATVCEKYDLWMHVDACWGGSLIFSEKYSFVLKGINRANSVSWNPH  163 (448)
Q Consensus        84 e~~l~~~~~~~~~~~lVv~~~~~t~tG~~~~l~~I~~ia~~~g~~l~VD~A~~~~~~~~~~~~~~~~~~~~aD~~~~s~h  163 (448)
                      ++.        .+++++++++++|++|.+.|+++|.++|+++|+++++|++|+..... .... .... ...++++.+++
T Consensus       145 ~~~--------~~~~~v~i~~p~nptG~~~~~~~l~~l~~~~~~~li~De~~~~~~~~-~~~~-~~~~-~~~~i~~~s~s  213 (360)
T 3hdo_A          145 PER--------YEGKVFFLTTPNAPLGPSFPLEYIDELARRCAGMLVLDETYAEFAES-NALE-LVRR-HENVVVTRTLS  213 (360)
T ss_dssp             CSS--------BCSSEEEEESSCTTTCCCCCHHHHHHHHHHBSSEEEEECTTGGGSSC-CCTH-HHHH-CSSEEEEEEST
T ss_pred             Hhh--------cCCCEEEEeCCCCCCCCCcCHHHHHHHHHHCCCEEEEECChHhhCCc-chhH-Hhcc-CCCEEEEecch
Confidence            222        13569999999999999999999999999999999999999853211 1111 1111 12457788999


Q ss_pred             cccCCC-CceEEEEEeccchhhhhccCCcccccccCcccccccCCCCCcccCCCCchhHHHHHHHHHhChHHHHHHHHHh
Q psy14299        164 KMLGAP-LQCSILLIKEKGLLHQANATAATYLFQQDKFYDVSFDTGDKSVQCGRKVDAFKLWLMWKARGNLGFRHFVDNA  242 (448)
Q Consensus       164 K~l~~P-~g~G~l~vr~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~g~~~~i~~~  242 (448)
                      |+++.| ..+|+++. ++++..........|                 +      ...                      
T Consensus       214 K~~g~~G~r~G~~~~-~~~~~~~~~~~~~~~-----------------~------~~~----------------------  247 (360)
T 3hdo_A          214 KSYSLAGMRIGLAIA-RPEVIAALDKIRDHY-----------------N------LDR----------------------  247 (360)
T ss_dssp             TTTSCTTSCCEEEEC-CHHHHHHHHHHSCSC-----------------C------SCH----------------------
T ss_pred             HhhcCCccceeeEee-CHHHHHHHHHhCCCC-----------------C------CCH----------------------
Confidence            998744 45677766 434333322111000                 0      000                      


Q ss_pred             hhhccCCCccchhhhhhhhhhhhhhhhhhhhhhhccccccccccCCCCCccccccchhhHHHHHHHHHhcCccHHHHHHH
Q psy14299        243 VDCSRGSMTFSTLLCFDLQGLLHQANATAATYLFQQDKFYDVSFDTGDKSVQCGRKVDAFKLWLMWKARGNLGFRHFVDN  322 (448)
Q Consensus       243 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~  322 (448)
                                                                              +.+..+..+++.  .++++++.++
T Consensus       248 --------------------------------------------------------~~~~a~~~~l~~--~~~~~~~~~~  269 (360)
T 3hdo_A          248 --------------------------------------------------------LAQAACVAALRD--QAYLSECCRR  269 (360)
T ss_dssp             --------------------------------------------------------HHHHHHHHHHHC--HHHHHHHHHH
T ss_pred             --------------------------------------------------------HHHHHHHHHhcC--HHHHHHHHHH
Confidence                                                                    011111122221  2346677888


Q ss_pred             HHHHHHHHHHHhhcCCCeEEeccCCceeeEEEEeeccCCCccccchhhhhhhhhhhHHHHHHHHhCCcEEEEeeecCCcc
Q psy14299        323 AVDCSRYFLSQISQRPGFRLVIPEFQCTNICFWFIPVSLRDKVEDETWWSTLSKVAPRIKEKLVLGGTLMIGYQPLQHRN  402 (448)
Q Consensus       323 ~~~l~~~~~~~L~~~pg~~l~~~~~~~~~v~f~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~L~~~g~~~~~~~~~~g~~  402 (448)
                      ..++++++.+.|+++ |+++.  ++..+.+.+.+  ++.+               ..++.+.|.++| +.+.+....+  
T Consensus       270 ~~~~~~~l~~~L~~~-~~~~~--~~~~~~~~~~~--~~~~---------------~~~l~~~l~~~g-i~v~~~~~~~--  326 (360)
T 3hdo_A          270 IRETREWFTTELRSI-GYDVI--PSQGNYLFATP--PDRD---------------GKRVYDGLYARK-VLVRHFSDPL--  326 (360)
T ss_dssp             HHHHHHHHHHHHHHT-TCEEC--CCSSSEEEEEC--TTCC---------------HHHHHHHHHHTT-EECBCCCSTT--
T ss_pred             HHHHHHHHHHHHHHC-CCEEc--CCCccEEEEEC--CCCC---------------HHHHHHHHHHCC-EEEEECCCCC--
Confidence            889999999999998 89875  44444444432  1211               237888899999 5554433211  


Q ss_pred             cccEEEEEecCCCCCCHHHHHHHHHHHHHHHHH
Q psy14299        403 LHNFFRLVTTCHPASSRQDMDYAIDQIELRGAE  435 (448)
Q Consensus       403 ~~~~lRis~~~~~~~t~edid~l~~al~~~~~~  435 (448)
                      .++++|+++  +   +++|+|+++++|+++.+.
T Consensus       327 ~~~~iRis~--~---~~~e~~~l~~al~~~~~~  354 (360)
T 3hdo_A          327 LAHGMRISI--G---TREEMEQTLAALKEIGEG  354 (360)
T ss_dssp             TTTSEEEEC--C---CHHHHHHHHHHHHHHHC-
T ss_pred             CCCEEEEEc--C---CHHHHHHHHHHHHHHhcc
Confidence            237999999  3   899999999999998764

>2rfv_A Methionine gamma-lyase; pyridoxal-5'-phosphate, PLP-dependent enzyme; HET: LLP; 1.35A {Citrobacter freundii} PDB: 1y4i_A* 3jwa_A* 3jw9_A* 3jwb_A* 3mkj_A*

Probab=99.82  E-value=2.1e-18  Score=174.71  Aligned_cols=142  Identities=11%  Similarity=0.021  Sum_probs=117.6

Q ss_pred             cEEEeCcHHHHHHHHHHHHHHhcCCcccccCCCCCCCeEEEecCCCchHHHHHH----HHhCCCCCcEEEEecCCCCCcC
Q psy14299          4 KPFLLPGGSISNMYSICLARYRLDPDTKRKGLSHLPPLCMFTSEDSHYSMLKAA----HWLGIGMDNVIRVKTNERGQMI   79 (448)
Q Consensus         4 ~g~~t~ggT~an~~al~~a~~~~~~~~~~~G~~~~~~~~Vl~~~~~H~s~~~~~----~~~g~~~~~v~~v~~~~~g~id   79 (448)
                      ..+++++||+++..++.++..              +++.|+++..+|.++...+    +..|.   +++.++.+     |
T Consensus        81 ~~i~~~sG~~a~~~~l~~~~~--------------~gd~vi~~~~~~~~~~~~~~~~~~~~g~---~~~~v~~~-----d  138 (398)
T 2rfv_A           81 AGLATASGISAITTTLLTLCQ--------------QGDHIVSASAIYGCTHAFLSHSMPKFGI---NVRFVDAA-----K  138 (398)
T ss_dssp             EEEEESSHHHHHHHHHHHHCC--------------TTCEEEEESSSCHHHHHHHHTHHHHTTC---EEEEECTT-----S
T ss_pred             cEEEECCHHHHHHHHHHHHhC--------------CCCEEEEcCCCcccHHHHHHHHHHHcCC---EEEEeCCC-----C
Confidence            468888999999988877633              5677999999999988876    66677   78888875     8


Q ss_pred             HHHHHHHHHHhhhcCCCcEEEEEeccCCccccccCHHHHHHHHHHcCCEEEEecccccccccccchhhhhcCCCCccEEE
Q psy14299         80 CSFLEQTIQTSLAEKKIPLFVNATAGTTVLGAFDPLDEIATVCEKYDLWMHVDACWGGSLIFSEKYSFVLKGINRANSVS  159 (448)
Q Consensus        80 ~e~Le~~l~~~~~~~~~~~lVv~~~~~t~tG~~~~l~~I~~ia~~~g~~l~VD~A~~~~~~~~~~~~~~~~~~~~aD~~~  159 (448)
                      +++|++++++      ++++|++++++|++|.+.|+++|.++|++||+++|+|++|+.+....+.      .. .+|+++
T Consensus       139 ~~~l~~~i~~------~~~~v~~~~~~nptG~~~~l~~i~~l~~~~~~~li~De~~~~~~~~~~~------~~-~~di~~  205 (398)
T 2rfv_A          139 PEEIRAAMRP------ETKVVYIETPANPTLSLVDIETVAGIAHQQGALLVVDNTFMSPYCQQPL------QL-GADIVV  205 (398)
T ss_dssp             HHHHHHHCCT------TEEEEEEESSBTTTTBCCCHHHHHHHHHHTTCEEEEECTTTCTTTCCGG------GG-TCSEEE
T ss_pred             HHHHHHhcCC------CCeEEEEECCCCCCCcccCHHHHHHHHHHcCCEEEEECCCcccccCCch------hh-CCcEEE
Confidence            9999998854      5789999999999999999999999999999999999999977653211      11 379999


Q ss_pred             ECCccccCCCCc--eEEEEEecc
Q psy14299        160 WNPHKMLGAPLQ--CSILLIKEK  180 (448)
Q Consensus       160 ~s~hK~l~~P~g--~G~l~vr~~  180 (448)
                      .++||++++|.+  .|+++.+++
T Consensus       206 ~s~sK~~~~~g~~~~G~~~~~~~  228 (398)
T 2rfv_A          206 HSVTKYINGHGDVIGGIIVGKQE  228 (398)
T ss_dssp             EETTTTTTCSSCCCCEEEEECHH
T ss_pred             EeCcccccCCCCceEEEEEECHH
Confidence            999999999887  688887654

>3h7f_A Serine hydroxymethyltransferase 1; cytoplasm, one-carbon metabolism, pyridoxal phosphate, structural genomics; HET: LLP; 1.50A {Mycobacterium tuberculosis}

Probab=99.81  E-value=5.8e-19  Score=181.91  Aligned_cols=287  Identities=11%  Similarity=0.020  Sum_probs=178.4

Q ss_pred             EEeCcHHHHHHHHHHHHHHhcCCcccccCCCCCCCeEEEecCCCchH-HHHH--HHHhCCCCCcEEEEecC-CCCCcCHH
Q psy14299          6 FLLPGGSISNMYSICLARYRLDPDTKRKGLSHLPPLCMFTSEDSHYS-MLKA--AHWLGIGMDNVIRVKTN-ERGQMICS   81 (448)
Q Consensus         6 ~~t~ggT~an~~al~~a~~~~~~~~~~~G~~~~~~~~Vl~~~~~H~s-~~~~--~~~~g~~~~~v~~v~~~-~~g~id~e   81 (448)
                      ++++|||++|..++.++++              +++.|+++..+|.+ +...  ....|... .+..++.+ +++.+|++
T Consensus       111 v~~~sGs~a~~~a~~~~~~--------------~Gd~Vl~~~~~~~~~~~~~~~~~~~g~~~-~~~~~~~~~~~~~~d~~  175 (447)
T 3h7f_A          111 VQPHSGAQANAAVLHALMS--------------PGERLLGLDLANGGHLTHGMRLNFSGKLY-ENGFYGVDPATHLIDMD  175 (447)
T ss_dssp             CCCSSHHHHHHHHHHHHCC--------------TTCEEEEECGGGTCCGGGTCTTSHHHHSS-EEEEECCCTTTCSCCHH
T ss_pred             EEeCCHHHHHHHHHHHhcC--------------CCCEEEecCcccccccchhhhhhhcCCee-EEEEcCcCcccCCcCHH
Confidence            3388999999888877644              56788888888866 2211  11222211 35556655 46789999


Q ss_pred             HHHHHHHHhhhcCCCcEEEEEeccCCccccccCHHHHHHHHHHcCCEEEEecccccccccccchhhhhcCCCCccEEEEC
Q psy14299         82 FLEQTIQTSLAEKKIPLFVNATAGTTVLGAFDPLDEIATVCEKYDLWMHVDACWGGSLIFSEKYSFVLKGINRANSVSWN  161 (448)
Q Consensus        82 ~Le~~l~~~~~~~~~~~lVv~~~~~t~tG~~~~l~~I~~ia~~~g~~l~VD~A~~~~~~~~~~~~~~~~~~~~aD~~~~s  161 (448)
                      +|++++++.     ++++|+++.+.++++.  |+++|.++|++||+++|+|++|+.+.........   .+..+|+++.+
T Consensus       176 ~l~~~i~~~-----~~~~i~~~~~~~~~~~--~l~~i~~l~~~~g~lli~Dea~~~g~~~~g~~~~---~~~~~di~~~s  245 (447)
T 3h7f_A          176 AVRATALEF-----RPKVIIAGWSAYPRVL--DFAAFRSIADEVGAKLLVDMAHFAGLVAAGLHPS---PVPHADVVSTT  245 (447)
T ss_dssp             HHHHHHHHH-----CCSEEEEECSSCCSCC--CHHHHHHHHHHHTCEEEEECTTTHHHHHTTSSCC---STTTCSEEEEE
T ss_pred             HHHHHHHhc-----CCeEEEEcCCCCCCcc--CHHHHHHHHHHcCCEEEEECCchhhhhcCCCCCC---CCCCCcEEEec
Confidence            999999652     4678888777776655  9999999999999999999998766543222111   12347999999


Q ss_pred             CccccCCCCceEEEEEeccchhhhhccCCcccccccCcccccccCCCCCcccCCCCchhHHHHHHHHHhChHHHHHHHHH
Q psy14299        162 PHKMLGAPLQCSILLIKEKGLLHQANATAATYLFQQDKFYDVSFDTGDKSVQCGRKVDAFKLWLMWKARGNLGFRHFVDN  241 (448)
Q Consensus       162 ~hK~l~~P~g~G~l~vr~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~g~~~~i~~  241 (448)
                      +||++++|.| |+++.++ ++.........++..                  .+ ..                       
T Consensus       246 ~sK~l~G~~g-G~i~~~~-~~~~~l~~~~~~~~~------------------~~-~~-----------------------  281 (447)
T 3h7f_A          246 VHKTLGGGRS-GLIVGKQ-QYAKAINSAVFPGQQ------------------GG-PL-----------------------  281 (447)
T ss_dssp             SSGGGCCCSC-EEEEECG-GGHHHHHHHHTTTTC------------------SS-CC-----------------------
T ss_pred             CCcCCCCCCe-EEEEECH-HHHHHHhhhcCCccc------------------CC-cc-----------------------
Confidence            9999998987 7776654 333222111001100                  00 00                       


Q ss_pred             hhhhccCCCccchhhhhhhhhhhhhhhhhhhhhhhccccccccccCCCCCccccccchhhHHHHHHHHHhcCccHHHHHH
Q psy14299        242 AVDCSRGSMTFSTLLCFDLQGLLHQANATAATYLFQQDKFYDVSFDTGDKSVQCGRKVDAFKLWLMWKARGNLGFRHFVD  321 (448)
Q Consensus       242 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~  321 (448)
                                                                              ...+.++..++.....++++++.+
T Consensus       282 --------------------------------------------------------~~~~~a~~~a~~~~~~~~~~~~~~  305 (447)
T 3h7f_A          282 --------------------------------------------------------MHVIAGKAVALKIAATPEFADRQR  305 (447)
T ss_dssp             --------------------------------------------------------HHHHHHHHHHHHHTTSHHHHHHHH
T ss_pred             --------------------------------------------------------HHHHHHHHHHHHHhhCHHHHHHHH
Confidence                                                                    001122233444444556788888


Q ss_pred             HHHHHHHHHHHHhhcC----CCeEEeccC-CceeeEEEEeeccCCCccccchhhhhhhhhhhHHHHHHHHhCCcEEEE--
Q psy14299        322 NAVDCSRYFLSQISQR----PGFRLVIPE-FQCTNICFWFIPVSLRDKVEDETWWSTLSKVAPRIKEKLVLGGTLMIG--  394 (448)
Q Consensus       322 ~~~~l~~~~~~~L~~~----pg~~l~~~~-~~~~~v~f~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~L~~~g~~~~~--  394 (448)
                      +..++++++.+.|+++    +|++++ .. .....+.+.+.+.++.               ...+.+.|.+.| +.+.  
T Consensus       306 ~~~~~~~~l~~~L~~~~~~~~g~~~~-~~~~~~~~~~~~~~~~~~~---------------~~~~~~~l~~~G-I~v~~~  368 (447)
T 3h7f_A          306 RTLSGARIIADRLMAPDVAKAGVSVV-SGGTDVHLVLVDLRDSPLD---------------GQAAEDLLHEVG-ITVNRN  368 (447)
T ss_dssp             HHHHHHHHHHHHHTSHHHHHTTCEEG-GGSCSSSEEEEECTTSSCC---------------HHHHHHHHHHTT-EECBC-
T ss_pred             HHHHHHHHHHHHHHhccccCCCeEEe-cCCCCCCEEEEEcCCCCCC---------------HHHHHHHHHHCC-eEEecc
Confidence            8999999999999887    689987 32 2344444444333222               124556666668 4444  


Q ss_pred             --eeecCCcccccEEEEEecCCCC----CCHHHHHHHHHHHHHHHHHh
Q psy14299        395 --YQPLQHRNLHNFFRLVTTCHPA----SSRQDMDYAIDQIELRGAEV  436 (448)
Q Consensus       395 --~~~~~g~~~~~~lRis~~~~~~----~t~edid~l~~al~~~~~~~  436 (448)
                        +........+..+|+++.  ..    .+++|+++++++|+++.++.
T Consensus       369 ~i~~~~~~p~~~~~lRig~~--~~~~~~~~~eei~~~~~~l~~~l~~~  414 (447)
T 3h7f_A          369 AVPNDPRPPMVTSGLRIGTP--ALATRGFGDTEFTEVADIIATALATG  414 (447)
T ss_dssp             ------------CEEEEECH--HHHHHTCCHHHHHHHHHHHHHHHHSG
T ss_pred             cCCCCCCCCCCCCceeccCH--HHhhCCCCHHHHHHHHHHHHHHHhcc
Confidence              210011111367999873  33    57999999999999987654

>1vef_A Acetylornithine/acetyl-lysine aminotransferase; PLP, riken structural genomics/proteomics initiative, RSGI, structural genomics; HET: PLP; 1.35A {Thermus thermophilus} SCOP: c.67.1.4 PDB: 1wkg_A* 1wkh_A*

Probab=99.81  E-value=4.1e-18  Score=171.90  Aligned_cols=151  Identities=13%  Similarity=0.073  Sum_probs=105.1

Q ss_pred             cEEEeCcHHHHHHHHHHHHHHhcCCcccccCCCCCCCeEEEecCCCchHHHHHHHHhCCCC---------CcEEEEecCC
Q psy14299          4 KPFLLPGGSISNMYSICLARYRLDPDTKRKGLSHLPPLCMFTSEDSHYSMLKAAHWLGIGM---------DNVIRVKTNE   74 (448)
Q Consensus         4 ~g~~t~ggT~an~~al~~a~~~~~~~~~~~G~~~~~~~~Vl~~~~~H~s~~~~~~~~g~~~---------~~v~~v~~~~   74 (448)
                      .+++|+|||+++..++.+++...           .++.+|+.+...|.+...+++..|...         ..+..++.  
T Consensus       106 ~v~~~~gg~~a~~~al~~~~~~~-----------~~~~vi~~~~~y~~~~~~~~~~~g~~~~~~~~~p~~~~~~~~~~--  172 (395)
T 1vef_A          106 RVFPVNSGTEANEAALKFARAHT-----------GRKKFVAAMRGFSGRTMGSLSVTWEPKYREPFLPLVEPVEFIPY--  172 (395)
T ss_dssp             EEEEESSHHHHHHHHHHHHHHHH-----------SCCEEEEETTCCCCSSHHHHHTCCCHHHHGGGCSCSSCEEEECT--
T ss_pred             EEEEcCcHHHHHHHHHHHHHHHh-----------CCCeEEEEcCCcCCCchhhhhhcCCcccccccCCCCCCeeEeCC--
Confidence            47899999999999988765210           134455555556666666666655520         01333433  


Q ss_pred             CCCcCHHHHHHHHHHhhhcCCCcEEEEEeccCCccccccC----HHHHHHHHHHcCCEEEEecccccccccccc-hhhhh
Q psy14299         75 RGQMICSFLEQTIQTSLAEKKIPLFVNATAGTTVLGAFDP----LDEIATVCEKYDLWMHVDACWGGSLIFSEK-YSFVL  149 (448)
Q Consensus        75 ~g~id~e~Le~~l~~~~~~~~~~~lVv~~~~~t~tG~~~~----l~~I~~ia~~~g~~l~VD~A~~~~~~~~~~-~~~~~  149 (448)
                         .|+++|++++++      ++++|+++.+++++|.+.|    +++|.++|++||+++++|++|+. ...... .....
T Consensus       173 ---~d~~~l~~~i~~------~~~~v~~~~~~~~tG~~~~~~~~l~~i~~l~~~~~~~li~Dea~~~-~~~~g~~~~~~~  242 (395)
T 1vef_A          173 ---NDVEALKRAVDE------ETAAVILEPVQGEGGVRPATPEFLRAAREITQEKGALLILDEIQTG-MGRTGKRFAFEH  242 (395)
T ss_dssp             ---TCHHHHHHHCCT------TEEEEEECSEETTTTSEECCHHHHHHHHHHHHHHTCEEEEECTTTT-TTTTSSSSTHHH
T ss_pred             ---CcHHHHHHHhcc------CEEEEEEeCccCCCCccCCCHHHHHHHHHHHHHcCCEEEEEecccC-CccCCchhHhhh
Confidence               489999999853      4788888888888999887    99999999999999999999993 211111 11112


Q ss_pred             cCCCCccEEEECCccccCCCCceEEEEEecc
Q psy14299        150 KGINRANSVSWNPHKMLGAPLQCSILLIKEK  180 (448)
Q Consensus       150 ~~~~~aD~~~~s~hK~l~~P~g~G~l~vr~~  180 (448)
                      .++ ..|++  ++||+++++.++|+++++++
T Consensus       243 ~~~-~~d~~--s~sK~~~~g~~~G~~~~~~~  270 (395)
T 1vef_A          243 FGI-VPDIL--TLAKALGGGVPLGVAVMREE  270 (395)
T ss_dssp             HTC-CCSEE--EECGGGGTTSSCEEEEEEHH
T ss_pred             cCC-CCCEE--EEcccccCCCceEEEEehHH
Confidence            222 36877  45999998888999998764

>3n75_A LDC, lysine decarboxylase, inducible; pyridoxal-5'-phosphate dependent decarboxylase, acid stress stringent response; HET: LLP G4P P6G; 2.00A {Escherichia coli} PDB: 3q16_A*

Probab=99.81  E-value=8.1e-19  Score=189.28  Aligned_cols=153  Identities=18%  Similarity=0.215  Sum_probs=116.2

Q ss_pred             EEeCcHHHHHHHHHHHHHHhcCCcccccCCCCCCCeEEEecCCCchHHHHHHHHhCCCCCcEEEEecCCC-----CCc--
Q psy14299          6 FLLPGGSISNMYSICLARYRLDPDTKRKGLSHLPPLCMFTSEDSHYSMLKAAHWLGIGMDNVIRVKTNER-----GQM--   78 (448)
Q Consensus         6 ~~t~ggT~an~~al~~a~~~~~~~~~~~G~~~~~~~~Vl~~~~~H~s~~~~~~~~g~~~~~v~~v~~~~~-----g~i--   78 (448)
                      ++++|+|.||..++.+...              +++.|++++..|.|+..++.+.|.   +++.++.+.+     +.+  
T Consensus       215 ~v~nGts~An~~ai~al~~--------------pGD~VLv~r~~H~S~~~~l~lsGa---~pv~v~~~~~~~gi~~~i~~  277 (715)
T 3n75_A          215 MVTNGTSTANKIVGMYSAP--------------AGSTILIDRNCHKSLTHLMMMSDV---TPIYFRPTRNAYGILGGIPQ  277 (715)
T ss_dssp             EESSHHHHHHHHHHHHHCC--------------TTCEEEEESSCCHHHHHHHHHSCC---EEEEECCCBCTTCCBCCCCG
T ss_pred             EECcHHHHHHHHHHHHhCC--------------CCCEEEECCCccHHHHHHHHHcCC---EEEEEeccccccccccCccc
Confidence            4455556888888776544              788899999999999999999998   7778876532     224  


Q ss_pred             ---CHHHHHHHHHHhhhcCCCcEEEEEeccCCccccccCHHHHHHHHHHcCCEEEEecccccccccccchhhhhcCCC--
Q psy14299         79 ---ICSFLEQTIQTSLAEKKIPLFVNATAGTTVLGAFDPLDEIATVCEKYDLWMHVDACWGGSLIFSEKYSFVLKGIN--  153 (448)
Q Consensus        79 ---d~e~Le~~l~~~~~~~~~~~lVv~~~~~t~tG~~~~l~~I~~ia~~~g~~l~VD~A~~~~~~~~~~~~~~~~~~~--  153 (448)
                         |+++|++++++..+ .++|++++++++ |++|.+.|+++|.++|++++  ++||+||+.+..+.+..+. ...+.  
T Consensus       278 ~~~d~e~Le~~l~~~~~-~k~p~~vivt~p-n~~G~v~dl~~I~ela~~~~--livDEAH~~~~~f~~~~~~-~~al~~g  352 (715)
T 3n75_A          278 SEFQHATIAKRVKETPN-ATWPVHAVITNS-TYDGLLYNTDFIKKTLDVKS--IHFDSAWVPYTNFSPIYEG-KCGMSGG  352 (715)
T ss_dssp             GGGSHHHHHHHHHHSTT-CCSCSEEEEESS-CTTSEEECHHHHHHHCCCSE--EEEECTTCTTGGGSGGGTT-SSTTSSS
T ss_pred             ccCCHHHHHHHHhhCcC-ccCceEEEEECC-CCCCccCCHHHHHHHhCcCc--EEEccccccccccCCcccc-ccccccC
Confidence               89999999986311 123558899998 88999999999999998764  7999999988644433221 11121  


Q ss_pred             -CccEE---EECCccccCCCCceEEEEEecc
Q psy14299        154 -RANSV---SWNPHKMLGAPLQCSILLIKEK  180 (448)
Q Consensus       154 -~aD~~---~~s~hK~l~~P~g~G~l~vr~~  180 (448)
                       .+|.+   +.|+||+|++|.++|++++++.
T Consensus       353 ~~aD~vii~~~S~hKtL~gltqgs~i~v~~~  383 (715)
T 3n75_A          353 RVEGKVIYETQSTHKLLAAFSQASMIHVKGD  383 (715)
T ss_dssp             CCTTCEEEEEECHHHHSSCCTTCEEEEEESC
T ss_pred             cCCCEEEEEEecccccccCCCCeeEEEeCch
Confidence             25766   8999999999999999999765

>1ax4_A Tryptophanase; tryptophan biosynthesis, tryptophan indole-lyase, pyridoxal 5'-phosphate, monovalent cation binding site; HET: LLP; 2.10A {Proteus vulgaris} SCOP: c.67.1.2

Probab=99.81  E-value=2.3e-18  Score=177.77  Aligned_cols=164  Identities=12%  Similarity=0.100  Sum_probs=110.3

Q ss_pred             cEEEeCcHHHHHHHHHHHHHHhcCCcccccCCCCCCCeE---EEecCCCc-hHHHHHHHHhCCCCCcEEEEecC------
Q psy14299          4 KPFLLPGGSISNMYSICLARYRLDPDTKRKGLSHLPPLC---MFTSEDSH-YSMLKAAHWLGIGMDNVIRVKTN------   73 (448)
Q Consensus         4 ~g~~t~ggT~an~~al~~a~~~~~~~~~~~G~~~~~~~~---Vl~~~~~H-~s~~~~~~~~g~~~~~v~~v~~~------   73 (448)
                      .++||+|||+||.+++.+++....          .+++.   |+++ ..| .+....+...|.   .++.++.+      
T Consensus        93 ~v~~t~ggt~A~~~al~~~~~~~~----------~~Gd~~~~viv~-~~~~~~~~~~~~~~g~---~~~~~~~~~~~~~~  158 (467)
T 1ax4_A           93 YIIPAHQGRGAENILFPVLLKYKQ----------KEGKAKNPVFIS-NFHFDTTAAHVELNGC---KAINIVTEKAFDSE  158 (467)
T ss_dssp             EEEEESSHHHHHHHHHHHHHHHHH----------HTTCCSSCEEEE-SSCCHHHHHHHHHTTC---EEEECBCGGGGCTT
T ss_pred             cEEEcCCcHHHHHHHHHHHHHhhc----------cCCCccceEEEe-ccccchhhHHHhccCC---ceeccccccccccc
Confidence            478999999999999988876200          02333   6666 666 455667777777   55555432      


Q ss_pred             ----CCCCcCHHHHHHHHHHhhhcCCCcEEEEEeccCCcc-ccc---cCHHHHHHHHHHcCCEEEEeccccc-cccccc-
Q psy14299         74 ----ERGQMICSFLEQTIQTSLAEKKIPLFVNATAGTTVL-GAF---DPLDEIATVCEKYDLWMHVDACWGG-SLIFSE-  143 (448)
Q Consensus        74 ----~~g~id~e~Le~~l~~~~~~~~~~~lVv~~~~~t~t-G~~---~~l~~I~~ia~~~g~~l~VD~A~~~-~~~~~~-  143 (448)
                          .++.+|+++|++++++..  ..++++|+++.++|++ |.+   +++++|.++|++||+++|+|+++.. +..+.. 
T Consensus       159 ~~~~~~~~~d~~~le~~i~~~~--~~~~~~vi~~~~~np~gG~~~~~~~l~~i~~la~~~gi~li~De~~~~~~~~~~~~  236 (467)
T 1ax4_A          159 TYDDWKGDFDIKKLKENIAQHG--ADNIVAIVSTVTCNSAGGQPVSMSNLKEVYEIAKQHGIFVVMDSARFCENAYFIKA  236 (467)
T ss_dssp             SCCTTTTCBCHHHHHHHHHHHC--GGGEEEEEEESSBTTTTSBCCCHHHHHHHHHHHHHHTCCEEEECTTHHHHHHHHHH
T ss_pred             ccCCcccccCHHHHHHHHHhcC--CCCeeEEEEeccccCCCccCCChhHHHHHHHHHHHcCCEEEEEchhhhhcchhccc
Confidence                146799999999997531  1257899999999999 665   5578999999999999999998765 221000 


Q ss_pred             ----chhhhhcCC-----CCccEEEECCccccCCCCceEEEEEecc-chhh
Q psy14299        144 ----KYSFVLKGI-----NRANSVSWNPHKMLGAPLQCSILLIKEK-GLLH  184 (448)
Q Consensus       144 ----~~~~~~~~~-----~~aD~~~~s~hK~l~~P~g~G~l~vr~~-~~~~  184 (448)
                          .....+..+     ..+|++++++||+++.|.| |+++.+++ ++..
T Consensus       237 ~~~~~~~~~~~~~~~~~~~~~d~~~~s~sK~~g~~~G-g~~~~~d~~~l~~  286 (467)
T 1ax4_A          237 RDPKYKNATIKEVIFDMYKYADALTMSAKKDPLLNIG-GLVAIRDNEEIFT  286 (467)
T ss_dssp             HCGGGTTCCHHHHHHHHGGGCSEEEEETTSTTCCSSC-EEEEESSCHHHHH
T ss_pred             cccccCCCchhhhhhhhccccceEEEeccccCCCCcc-eEEEeCCHHHHHH
Confidence                000000000     2368999999999988755 66655535 4443

>3ruy_A Ornithine aminotransferase; structural genomics, csgid, center for structural genomics O infectious diseases, alpha and beta protein; HET: LLP; 2.65A {Bacillus anthracis} SCOP: c.67.1.0

Probab=99.80  E-value=5.8e-18  Score=170.57  Aligned_cols=280  Identities=15%  Similarity=0.093  Sum_probs=172.4

Q ss_pred             cEEEeCcHHHHHHHHHHHHHHhcCCcccccCCCCCCCeEEEecCCCchHHHHHHHHhCCC----------CCcEEEEecC
Q psy14299          4 KPFLLPGGSISNMYSICLARYRLDPDTKRKGLSHLPPLCMFTSEDSHYSMLKAAHWLGIG----------MDNVIRVKTN   73 (448)
Q Consensus         4 ~g~~t~ggT~an~~al~~a~~~~~~~~~~~G~~~~~~~~Vl~~~~~H~s~~~~~~~~g~~----------~~~v~~v~~~   73 (448)
                      ..+||+|||++|..++..++.+..   ...|.+ ..++.|++...+|++....+...+..          ...+..++.+
T Consensus        95 ~v~~~~~gt~a~~~al~~~~~~~~---~~~~~~-~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  170 (392)
T 3ruy_A           95 MVLPMNTGAEAVETAIKTARRWAY---DVKKVE-ANRAEIIVCEDNFHGRTMGAVSMSSNEEYKRGFGPMLPGIIVIPYG  170 (392)
T ss_dssp             EEEEESSHHHHHHHHHHHHHHHHH---HTSCCC-TTCCEEEEETTCCCCSSHHHHHTCSCTTTTTTCCSCCSSEEEECTT
T ss_pred             EEEEeCcHHHHHHHHHHHHHHhhh---hccCCC-CCCcEEEEEcCCcCCCCHhhhhccCChhhccccCCCCCCCeeeCcc
Confidence            578999999999999987765300   111221 12446777777776555554433221          0124445543


Q ss_pred             CCCCcCHHHHHHHHHHhhhcCCCcEEEEEeccCCccccccC----HHHHHHHHHHcCCEEEEecccccccccccchhhhh
Q psy14299         74 ERGQMICSFLEQTIQTSLAEKKIPLFVNATAGTTVLGAFDP----LDEIATVCEKYDLWMHVDACWGGSLIFSEKYSFVL  149 (448)
Q Consensus        74 ~~g~id~e~Le~~l~~~~~~~~~~~lVv~~~~~t~tG~~~~----l~~I~~ia~~~g~~l~VD~A~~~~~~~~~~~~~~~  149 (448)
                           |+++|++++++      ++++|++++++|++|.+.|    +++|.++|++||+++|+|++|+.............
T Consensus       171 -----d~~~l~~~l~~------~~~~v~~~~~~nptG~~~~~~~~l~~i~~l~~~~~~~li~De~~~~~~~~g~~~~~~~  239 (392)
T 3ruy_A          171 -----DLEALKAAITP------NTAAFILEPIQGEAGINIPPAGFLKEALEVCKKENVLFVADEIQTGLGRTGKVFACDW  239 (392)
T ss_dssp             -----CHHHHHHHCCT------TEEEEEECSSBSTTTSBCCCTTHHHHHHHHHHTTTCEEEEECTTTTTTTTSSSSGGGG
T ss_pred             -----cHHHHHHHhcc------CeEEEEEeCccCCCCCccCCHHHHHHHHHHHHHcCCEEEEeechhCCCccccchhhhc
Confidence                 89999999863      5889999999999999998    99999999999999999999963211111111111


Q ss_pred             cCCCCccEEEECCccccCCC-CceEEEEEeccchhhhhccCCcccccccCcccccccCCCCCcccCCCCchhHHHHHHHH
Q psy14299        150 KGINRANSVSWNPHKMLGAP-LQCSILLIKEKGLLHQANATAATYLFQQDKFYDVSFDTGDKSVQCGRKVDAFKLWLMWK  228 (448)
Q Consensus       150 ~~~~~aD~~~~s~hK~l~~P-~g~G~l~vr~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  228 (448)
                      .++ ..|++++|  |++++. ...|+++.++ ++..........+               .+      ....+.      
T Consensus       240 ~~~-~~d~~~~S--K~l~gG~~~~G~~~~~~-~~~~~~~~~~~~~---------------~~------~~~~~~------  288 (392)
T 3ruy_A          240 DNV-TPDMYILG--KALGGGVFPISCAAANR-DILGVFEPGSHGS---------------TF------GGNPLA------  288 (392)
T ss_dssp             GTC-CCSEEEEC--GGGGTTTSCCEEEEECH-HHHTTCCTTSSCC---------------SS------TTCHHH------
T ss_pred             cCC-CCCEEEEc--hhhhCChhhhEEEEECH-HHHhhhccCCcCC---------------CC------CCCHHH------
Confidence            122 36888775  987652 3478877755 3332221100000               00      000111      


Q ss_pred             HhChHHHHHHHHHhhhhccCCCccchhhhhhhhhhhhhhhhhhhhhhhccccccccccCCCCCccccccchhhHHHHHHH
Q psy14299        229 ARGNLGFRHFVDNAVDCSRGSMTFSTLLCFDLQGLLHQANATAATYLFQQDKFYDVSFDTGDKSVQCGRKVDAFKLWLMW  308 (448)
Q Consensus       229 ~~g~~g~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  308 (448)
                                                                                              +..+..++
T Consensus       289 ------------------------------------------------------------------------~~a~~~~l  296 (392)
T 3ruy_A          289 ------------------------------------------------------------------------CAVSIAAL  296 (392)
T ss_dssp             ------------------------------------------------------------------------HHHHHHHH
T ss_pred             ------------------------------------------------------------------------HHHHHHHH
Confidence                                                                                    11111122


Q ss_pred             HHhcCccHHHHHHHHHHHHHHHHHHhhcC--CCeEEeccCCceeeEEEEeeccCCCccccchhhhhhhhhhhHHHHHHHH
Q psy14299        309 KARGNLGFRHFVDNAVDCSRYFLSQISQR--PGFRLVIPEFQCTNICFWFIPVSLRDKVEDETWWSTLSKVAPRIKEKLV  386 (448)
Q Consensus       309 ~~~~~~G~~~~~~~~~~l~~~~~~~L~~~--pg~~l~~~~~~~~~v~f~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~L~  386 (448)
                      +....   +++.++..++++++.+.|+++  |.+...  ++..+++.+.+ +.  .               ..++.+.|.
T Consensus       297 ~~~~~---~~~~~~~~~~~~~l~~~L~~~~~~~~~~~--~~~g~~~~~~~-~~--~---------------~~~l~~~l~  353 (392)
T 3ruy_A          297 EVLEE---EKLTERSLQLGEKLVGQLKEIDNPMITEV--RGKGLFIGIEL-NE--P---------------ARPYCEQLK  353 (392)
T ss_dssp             HHHHH---TTHHHHHHHHHHHHHHHHTTCCCTTEEEE--EEETTEEEEEE-SS--C---------------SHHHHHHHH
T ss_pred             HHHHh---hhHHHHHHHHHHHHHHHHHHhcCCCceEE--EeeeeEEEEEE-cc--h---------------HHHHHHHHH
Confidence            22111   346677888899999999987  335443  23445555543 21  1               237888999


Q ss_pred             hCCcEEEEeeecCCcccccEEEEEecCCCCCCHHHHHHHHHHHHHHH
Q psy14299        387 LGGTLMIGYQPLQHRNLHNFFRLVTTCHPASSRQDMDYAIDQIELRG  433 (448)
Q Consensus       387 ~~g~~~~~~~~~~g~~~~~~lRis~~~~~~~t~edid~l~~al~~~~  433 (448)
                      ++| +.+.+.   +   ++++|+++  +..+|++|+++++++|+++.
T Consensus       354 ~~g-i~v~~~---~---~~~iRi~~--~~~~~~~~i~~~~~~l~~~l  391 (392)
T 3ruy_A          354 AAG-LLCKET---H---ENVIRIAP--PLVISEEDLEWAFQKIKAVL  391 (392)
T ss_dssp             TTT-EECCCB---T---TTEEEECC--CTTCCHHHHHHHHHHHHHHH
T ss_pred             HCC-cEEecC---C---CCEEEEEC--CCCCCHHHHHHHHHHHHHHh
Confidence            999 555442   1   27999999  67899999999999998864

>2r2n_A Kynurenine/alpha-aminoadipate aminotransferase mitochondrial; alpha & beta protein, PLP-dependent transferase, aminotransf mitochondrion; HET: PMP KYN; 1.95A {Homo sapiens} PDB: 2qlr_A* 3dc1_A* 3ue8_A* 2vgz_A* 2xh1_A*

Probab=99.80  E-value=1.4e-17  Score=170.10  Aligned_cols=157  Identities=17%  Similarity=0.168  Sum_probs=115.8

Q ss_pred             cEEEeCcHHHHHHHHHHHHHHhcCCcccccCCCCCCCeEEEecCCCchHHHHHHHHhCCCCCcEEEEecCCCCCcCHHHH
Q psy14299          4 KPFLLPGGSISNMYSICLARYRLDPDTKRKGLSHLPPLCMFTSEDSHYSMLKAAHWLGIGMDNVIRVKTNERGQMICSFL   83 (448)
Q Consensus         4 ~g~~t~ggT~an~~al~~a~~~~~~~~~~~G~~~~~~~~Vl~~~~~H~s~~~~~~~~g~~~~~v~~v~~~~~g~id~e~L   83 (448)
                      ..++|+|+++++..++.+...              +++.|+++...|.++...++..|.   +++.+|.++++ +|+++|
T Consensus       110 ~i~~t~G~~~al~~~~~~l~~--------------~gd~Vlv~~p~y~~~~~~~~~~g~---~~~~v~~~~~~-~d~~~l  171 (425)
T 2r2n_A          110 DLCVTSGSQQGLCKVFEMIIN--------------PGDNVLLDEPAYSGTLQSLHPLGC---NIINVASDESG-IVPDSL  171 (425)
T ss_dssp             EEEEESSHHHHHHHHHHHHCC--------------TTCEEEEESSCCHHHHHHHGGGTC---EEEEECEETTE-ECHHHH
T ss_pred             cEEEeCcHHHHHHHHHHHhCC--------------CCCEEEEeCCCcHHHHHHHHHcCC---EEEEeCcCCCC-CCHHHH
Confidence            689999999999888877643              567899999999999999998888   78889887654 899999


Q ss_pred             HHHHHHhh------hcCCCcEEEEE-eccCCccccccCHH---HHHHHHHHcCCEEEEecccccccccccch-h-hhhcC
Q psy14299         84 EQTIQTSL------AEKKIPLFVNA-TAGTTVLGAFDPLD---EIATVCEKYDLWMHVDACWGGSLIFSEKY-S-FVLKG  151 (448)
Q Consensus        84 e~~l~~~~------~~~~~~~lVv~-~~~~t~tG~~~~l~---~I~~ia~~~g~~l~VD~A~~~~~~~~~~~-~-~~~~~  151 (448)
                      ++++++..      ....++++|++ .+++|+||.+.|.+   +|.++|++||+++++|++|+...+..... . ..+. 
T Consensus       172 ~~~l~~~~~~~~~~~~~~~~~~v~~~~~~~NPtG~~~~~~~l~~l~~~a~~~~~~li~De~~~~~~~~g~~~~~~~~~~-  250 (425)
T 2r2n_A          172 RDILSRWKPEDAKNPQKNTPKFLYTVPNGNNPTGNSLTSERKKEIYELARKYDFLIIEDDPYYFLQFNKFRVPTFLSMD-  250 (425)
T ss_dssp             HHHHTTSCSTTSSSTTSCCCSEEEECCSSCTTTCCCCCHHHHHHHHHHHHHTTCEEEEECTTGGGBSSSSCCCCTGGGC-
T ss_pred             HHHHHhhhccccccccCCCceEEEECCCCcCCCCCcCCHHHHHHHHHHHHHcCCEEEEECCcccccCCCCCCCCccccC-
Confidence            99996311      00124677766 58899999998765   99999999999999999998543311100 0 0011 


Q ss_pred             CCCccEEEECCccccCCCC-ceEEEEEecc
Q psy14299        152 INRANSVSWNPHKMLGAPL-QCSILLIKEK  180 (448)
Q Consensus       152 ~~~aD~~~~s~hK~l~~P~-g~G~l~vr~~  180 (448)
                      ....++++.+++|+++ |. .+|+++++++
T Consensus       251 ~~~~~i~~~s~SK~~~-~GlRiG~~~~~~~  279 (425)
T 2r2n_A          251 VDGRVIRADSFSKIIS-SGLRIGFLTGPKP  279 (425)
T ss_dssp             TTSCEEEEEESTTTTC-STTCCEEEEEEHH
T ss_pred             CCCCEEEEccchhhcc-CccceEEEecCHH
Confidence            1123577889999997 42 3688887653

>3fvs_A Kynurenine--oxoglutarate transaminase 1; alpha beta protein, PLP dependent protein, aminotransferase, pyridoxal phosphate, transferase; HET: LLP; 1.50A {Homo sapiens} SCOP: c.67.1.1 PDB: 3fvu_A* 3fvx_A* 1w7l_A* 1w7m_A* 1w7n_A*

Probab=99.80  E-value=2.1e-18  Score=175.40  Aligned_cols=153  Identities=12%  Similarity=0.009  Sum_probs=117.5

Q ss_pred             cEEEeCcHHHHHHHHHHHHHHhcCCcccccCCCCCCCeEEEecCCCchHHHHHHHHhCCCCCcEEEEecCC---------
Q psy14299          4 KPFLLPGGSISNMYSICLARYRLDPDTKRKGLSHLPPLCMFTSEDSHYSMLKAAHWLGIGMDNVIRVKTNE---------   74 (448)
Q Consensus         4 ~g~~t~ggT~an~~al~~a~~~~~~~~~~~G~~~~~~~~Vl~~~~~H~s~~~~~~~~g~~~~~v~~v~~~~---------   74 (448)
                      ..++|+|||+++..++..+..              +++.|+++...|.++...++..|.   +++.+|.++         
T Consensus        93 ~i~~~~g~~~a~~~~~~~~~~--------------~gd~vl~~~p~~~~~~~~~~~~g~---~~~~~~~~~~~~~~G~~~  155 (422)
T 3fvs_A           93 NVLVTVGGYGALFTAFQALVD--------------EGDEVIIIEPFFDCYEPMTMMAGG---RPVFVSLKPGPIQNGELG  155 (422)
T ss_dssp             HEEEESHHHHHHHHHHHHHCC--------------TTCEEEEEESCCTTHHHHHHHTTC---EEEEEECBCCCCCSSSCC
T ss_pred             cEEEECChHHHHHHHHHHHcC--------------CCCEEEEcCCCchhhHHHHHHcCC---EEEEEecccccccccccc
Confidence            589999999999888877633              566788898999999999999988   788898875         


Q ss_pred             ---CCCcCHHHHHHHHHHhhhcCCCcEEEEEeccCCcccccc---CHHHHHHHHHHcCCEEEEecccccccccccchhh-
Q psy14299         75 ---RGQMICSFLEQTIQTSLAEKKIPLFVNATAGTTVLGAFD---PLDEIATVCEKYDLWMHVDACWGGSLIFSEKYSF-  147 (448)
Q Consensus        75 ---~g~id~e~Le~~l~~~~~~~~~~~lVv~~~~~t~tG~~~---~l~~I~~ia~~~g~~l~VD~A~~~~~~~~~~~~~-  147 (448)
                         ++.+|+++|++++++      ++++|++++++|++|.+.   ++++|.++|++||+++++|++|+........... 
T Consensus       156 ~~~~~~~d~~~l~~~~~~------~~~~v~~~~p~nptG~~~~~~~l~~i~~~~~~~~~~li~De~~~~~~~~~~~~~~~  229 (422)
T 3fvs_A          156 SSSNWQLDPMELAGKFTS------RTKALVLNTPNNPLGKVFSREELELVASLCQQHDVVCITDEVYQWMVYDGHQHISI  229 (422)
T ss_dssp             BGGGSBCCHHHHHTTCCT------TEEEEEEESSCTTTCCCCCHHHHHHHHHHHHHHTCEEEEECTTTTCBCTTCCCCCG
T ss_pred             cccCCCCCHHHHHhhcCC------CceEEEECCCCCCCCcCCCHHHHHHHHHHHHHcCcEEEEEccchhhccCCCCCCCh
Confidence               336899999998854      578999999999999988   5999999999999999999999864432110000 


Q ss_pred             -hhcCCCCccEEEECCccccCCC-CceEEEEEec
Q psy14299        148 -VLKGINRANSVSWNPHKMLGAP-LQCSILLIKE  179 (448)
Q Consensus       148 -~~~~~~~aD~~~~s~hK~l~~P-~g~G~l~vr~  179 (448)
                       ........++++.+++|+++.| ..+|+++.++
T Consensus       230 ~~~~~~~~~~i~~~S~sK~~g~~G~r~G~~~~~~  263 (422)
T 3fvs_A          230 ASLPGMWERTLTIGSAGKTFSATGWKVGWVLGPD  263 (422)
T ss_dssp             GGSTTTGGGEEEEEEHHHHHTCGGGCCEEEECCH
T ss_pred             hhcccccCcEEEEecchhccCCccceEEEEEeCH
Confidence             0111112457788999999744 4578776644

>3p1t_A Putative histidinol-phosphate aminotransferase; PLP-dependent transferase-like, structural genomics, joint C structural genomics, JCSG; HET: TLA; 2.60A {Burkholderia pseudomallei}

Probab=99.80  E-value=7.7e-18  Score=165.75  Aligned_cols=265  Identities=12%  Similarity=0.030  Sum_probs=178.5

Q ss_pred             cEEEeCcHHHHHHHHHHHHHHhcCCcccccCCCCCCCeEEEecCCCchHHHHHHHHhCCCCCcEEEEecCCCCCcCHHHH
Q psy14299          4 KPFLLPGGSISNMYSICLARYRLDPDTKRKGLSHLPPLCMFTSEDSHYSMLKAAHWLGIGMDNVIRVKTNERGQMICSFL   83 (448)
Q Consensus         4 ~g~~t~ggT~an~~al~~a~~~~~~~~~~~G~~~~~~~~Vl~~~~~H~s~~~~~~~~g~~~~~v~~v~~~~~g~id~e~L   83 (448)
                      ..++|+|+|+++..++...                +++.|+++...|.++...++..|.   +++.+|.++++.+|+++|
T Consensus        70 ~i~~t~G~~~~l~~~~~~~----------------~gd~vl~~~p~~~~~~~~~~~~g~---~~~~v~~~~~~~~d~~~l  130 (337)
T 3p1t_A           70 NLMLVRGIDECFDRISAEF----------------SSMRFVTAWPGFDGYRARIAVSGL---RHFEIGLTDDLLLDPNDL  130 (337)
T ss_dssp             GEEEESHHHHHHHHHHHHS----------------TTSEEEEESSSCSHHHHHHTTSCC---EEEEECBCTTSSBCHHHH
T ss_pred             HEEEeCCHHHHHHHHHHhc----------------CCCeEEEeCCCcHHHHHHHHHcCC---EEEEecCCCCCCCCHHHH
Confidence            5789999999987776553                234688899999999999988888   799999988889999999


Q ss_pred             HHHHHHhhhcCCCcEEEEEeccCCccccccCHHHHHHHHHHcCCEEEEecccccccccccchhhhhcCCCCccEEEECCc
Q psy14299         84 EQTIQTSLAEKKIPLFVNATAGTTVLGAFDPLDEIATVCEKYDLWMHVDACWGGSLIFSEKYSFVLKGINRANSVSWNPH  163 (448)
Q Consensus        84 e~~l~~~~~~~~~~~lVv~~~~~t~tG~~~~l~~I~~ia~~~g~~l~VD~A~~~~~~~~~~~~~~~~~~~~aD~~~~s~h  163 (448)
                      +++.        +++++++++++|++|.+.|++++.++|+++++ +++|++|+........    .......++++.|++
T Consensus       131 ~~~~--------~~~~v~i~~p~nptG~~~~~~~l~~l~~~~~~-~ivDea~~~~~~~~~~----~~~~~~~~i~~~S~s  197 (337)
T 3p1t_A          131 AQVS--------RDDCVVLANPSNPTGQALSAGELDQLRQRAGK-LLIDETYVDYSSFRAR----GLAYGENELVFRSFS  197 (337)
T ss_dssp             TTCC--------TTEEEEEESSCTTTCCCCCHHHHHHHHHHCSE-EEEECTTGGGSSCSSS----CCCCBTTEEEEEESS
T ss_pred             Hhhc--------CCCEEEEeCCCCCCCCCCCHHHHHHHHHhCCc-EEEECCChhhcccccc----ccccCCCEEEEeeCc
Confidence            8751        46899999999999999999999999999997 6679998843221110    011223578899999


Q ss_pred             cccC-CCCceEEEEEeccchhhhhccCCcccccccCcccccccCCCCCcccCCCCchhHHHHHHHHHhChHHHHHHHHHh
Q psy14299        164 KMLG-APLQCSILLIKEKGLLHQANATAATYLFQQDKFYDVSFDTGDKSVQCGRKVDAFKLWLMWKARGNLGFRHFVDNA  242 (448)
Q Consensus       164 K~l~-~P~g~G~l~vr~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~g~~~~i~~~  242 (448)
                      |+++ ...++|+++.++ ++.......... . .                     ...+...+                 
T Consensus       198 K~~g~~G~r~G~~~~~~-~~~~~l~~~~~~-~-~---------------------~~~~~~~a-----------------  236 (337)
T 3p1t_A          198 KSYGLAGLRLGALFGPS-ELIAAMKRKQWF-C-N---------------------VGTLDLHA-----------------  236 (337)
T ss_dssp             STTCCTTTCCEEEECCH-HHHHHHHTTSCT-T-C---------------------SCHHHHHH-----------------
T ss_pred             hhccCcchheEEEEeCH-HHHHHHHhhcCC-C-C---------------------CCHHHHHH-----------------
Confidence            9997 335668776643 333332211000 0 0                     00000000                 


Q ss_pred             hhhccCCCccchhhhhhhhhhhhhhhhhhhhhhhccccccccccCCCCCccccccchhhHHHHHHHHHhcCccHHHHHHH
Q psy14299        243 VDCSRGSMTFSTLLCFDLQGLLHQANATAATYLFQQDKFYDVSFDTGDKSVQCGRKVDAFKLWLMWKARGNLGFRHFVDN  322 (448)
Q Consensus       243 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~  322 (448)
                                                                                   +..+++.  .+.+++..++
T Consensus       237 -------------------------------------------------------------~~~~l~~--~~~~~~~~~~  253 (337)
T 3p1t_A          237 -------------------------------------------------------------LEAALDN--DRAREAHIAK  253 (337)
T ss_dssp             -------------------------------------------------------------HHHHHTC--HHHHHHHHHH
T ss_pred             -------------------------------------------------------------HHHHhCC--HHHHHHHHHH
Confidence                                                                         0011110  1224455666


Q ss_pred             HHHHHHHHHHHhhcCCCeEEeccCCceeeEEEEeeccCCCccccchhhhhhhhhhhHHHHHHHHhCCcEEEEeeecCCcc
Q psy14299        323 AVDCSRYFLSQISQRPGFRLVIPEFQCTNICFWFIPVSLRDKVEDETWWSTLSKVAPRIKEKLVLGGTLMIGYQPLQHRN  402 (448)
Q Consensus       323 ~~~l~~~~~~~L~~~pg~~l~~~~~~~~~v~f~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~L~~~g~~~~~~~~~~g~~  402 (448)
                      ..++++++.+.|+++ |+++.  ++..+.+.+.. +   .               ...+.+.|.++| +.+.++...+. 
T Consensus       254 ~~~~~~~l~~~L~~~-g~~~~--~~~~~~~~~~~-~---~---------------~~~~~~~l~~~g-i~v~~g~~~~~-  309 (337)
T 3p1t_A          254 TLAQRRRVADALRGL-GYRVA--SSEANFVLVEN-A---A---------------GERTLRFLRERG-IQVKDAGQFGL-  309 (337)
T ss_dssp             HHHHHHHHHHHHHHT-TCCBC--CCSSSEEEEEC-T---T---------------THHHHHHHHHTT-EECEEGGGGTC-
T ss_pred             HHHHHHHHHHHHHHC-cCEEC--CCCCeEEEEEc-C---C---------------HHHHHHHHHHCC-eEEEECccCCC-
Confidence            677788999999998 88764  44555554432 1   1               125677888888 55555443332 


Q ss_pred             cccEEEEEecCCCCCCHHHHHHHHHHHHHHHH
Q psy14299        403 LHNFFRLVTTCHPASSRQDMDYAIDQIELRGA  434 (448)
Q Consensus       403 ~~~~lRis~~~~~~~t~edid~l~~al~~~~~  434 (448)
                       ++++|+|++     +++|+++++++|+++.+
T Consensus       310 -~~~iRis~~-----~~~~~~~l~~al~~~~~  335 (337)
T 3p1t_A          310 -HHHIRISIG-----REEDNDRLLAALAEYSD  335 (337)
T ss_dssp             -CSEEEEECC-----CHHHHHHHHHHHHHHTC
T ss_pred             -CCeEEEecC-----CHHHHHHHHHHHHHHhh
Confidence             479999993     79999999999998753

>3ez1_A Aminotransferase MOCR family; YP_604413.1, struct genomics, joint center for structural genomics, JCSG; 2.60A {Deinococcus geothermalis dsm 11300}

Probab=99.80  E-value=1.5e-17  Score=169.41  Aligned_cols=160  Identities=13%  Similarity=0.040  Sum_probs=116.2

Q ss_pred             cEEEeCcHHHHHH--HHHHHHHH--hcCCcccccCC--CC-CCCeEEEecCCCchHHHHHHHHhCCCCCcEEEEecCCCC
Q psy14299          4 KPFLLPGGSISNM--YSICLARY--RLDPDTKRKGL--SH-LPPLCMFTSEDSHYSMLKAAHWLGIGMDNVIRVKTNERG   76 (448)
Q Consensus         4 ~g~~t~ggT~an~--~al~~a~~--~~~~~~~~~G~--~~-~~~~~Vl~~~~~H~s~~~~~~~~g~~~~~v~~v~~~~~g   76 (448)
                      ..++|+|+|+++.  +++.+...  +        |-  ++ .+++.|+++...|..+...++..|.   +++.+|.++++
T Consensus        89 ~i~~t~G~~~al~~~~~~~~l~~~~~--------g~~~~~~~~gd~Vlv~~p~y~~~~~~~~~~g~---~~~~v~~~~~g  157 (423)
T 3ez1_A           89 NVLVWNNSSLELQGLVLTFALLHGVR--------GSTGPWLSQTPKMIVTVPGYDRHFLLLQTLGF---ELLTVDMQSDG  157 (423)
T ss_dssp             GEEECSSCHHHHHHHHHHHHHHTCCT--------TCSSCGGGGCCEEEEEESCCHHHHHHHHHHTC---EEEEEEEETTE
T ss_pred             hEEEeCCcHHHHHHHHHHHHHhccCC--------CccccccCCCCEEEEcCCCcHHHHHHHHHcCC---EEEeccCCCCC
Confidence            5789999999986  66665544  2        00  00 0046789999999999999999998   78899988765


Q ss_pred             CcCHHHHHHHHHHhhhcCCCcEEEEEe-ccCCccccccCHH---HHHHHH-HHcCCEEEEecccccccccc-c-----ch
Q psy14299         77 QMICSFLEQTIQTSLAEKKIPLFVNAT-AGTTVLGAFDPLD---EIATVC-EKYDLWMHVDACWGGSLIFS-E-----KY  145 (448)
Q Consensus        77 ~id~e~Le~~l~~~~~~~~~~~lVv~~-~~~t~tG~~~~l~---~I~~ia-~~~g~~l~VD~A~~~~~~~~-~-----~~  145 (448)
                       +|+++|++++++    ..++++|+++ +++|+||.+.|.+   +|+++| ++||+++++|++|+...+.. .     ..
T Consensus       158 -~d~~~l~~~l~~----~~~~~~v~~~~~~~NPtG~~~~~~~l~~l~~~a~~~~~~~li~De~y~~~~~~~~~~~~~~~~  232 (423)
T 3ez1_A          158 -PDVDAVERLAGT----DPSVKGILFVPTYSNPGGETISLEKARRLAGLQAAAPDFTIFADDAYRVHHLVEEDRAEPVNF  232 (423)
T ss_dssp             -ECHHHHHHHHHS----CTTEEEEEECSSSCTTTCCCCCHHHHHHHHTCCCSSTTCEEEEECTTSSCBCCSSSCCCCCCH
T ss_pred             -CCHHHHHHHHhh----CCCceEEEECCCCCCCCCcCCCHHHHHHHHHHHHhccCCEEEEECCcchhhcCCCCCCCCcch
Confidence             999999999962    1357788655 7899999998877   888888 99999999999998533221 0     00


Q ss_pred             hhhh--cCCCCccEEEECCccccCCCCceEEEEEec
Q psy14299        146 SFVL--KGINRANSVSWNPHKMLGAPLQCSILLIKE  179 (448)
Q Consensus       146 ~~~~--~~~~~aD~~~~s~hK~l~~P~g~G~l~vr~  179 (448)
                      ....  .+....++++.+++|+++...++|+++.++
T Consensus       233 ~~~~~~~~~~~~~i~~~S~sK~~~~G~r~G~~~~~~  268 (423)
T 3ez1_A          233 VVLARDAGYPDRAFVFASTSKITFAGAGLGFVASSE  268 (423)
T ss_dssp             HHHHHHHTCTTSEEEEEESTTTSCSSSSCEEEEECH
T ss_pred             hhhhhccCCCCeEEEEeCchhhccCCcceEEEEeCH
Confidence            0000  012235688899999866667788877754

>1e5e_A MGL, methionine gamma-lyase; methionine biosynthesis, PLP-dependent enzymes, C-S gamma lyase; HET: PPJ; 2.18A {Trichomonas vaginalis} SCOP: c.67.1.3 PDB: 1e5f_A*

Probab=99.80  E-value=2.2e-17  Score=167.94  Aligned_cols=142  Identities=10%  Similarity=0.023  Sum_probs=118.0

Q ss_pred             cEEEeCcHHHHHHHHHHHHHHhcCCcccccCCCCCCCeEEEecCCCchHHHH----HHHHhCCCCCcEEEEecCCCCCcC
Q psy14299          4 KPFLLPGGSISNMYSICLARYRLDPDTKRKGLSHLPPLCMFTSEDSHYSMLK----AAHWLGIGMDNVIRVKTNERGQMI   79 (448)
Q Consensus         4 ~g~~t~ggT~an~~al~~a~~~~~~~~~~~G~~~~~~~~Vl~~~~~H~s~~~----~~~~~g~~~~~v~~v~~~~~g~id   79 (448)
                      ..++++||++++..++.+..+              +++.|+++...|.++..    .++..|.   +++.++.+     |
T Consensus        79 ~~i~~~~g~~ai~~~~~~l~~--------------~gd~Vl~~~~~y~~~~~~~~~~~~~~g~---~~~~v~~~-----d  136 (404)
T 1e5e_A           79 ACVATSSGMGAIAATVLTILK--------------AGDHLISDECLYGCTHALFEHALTKFGI---QVDFINTA-----I  136 (404)
T ss_dssp             EEEEESSHHHHHHHHHHHHCC--------------TTCEEEEESCCCHHHHHHHHTHHHHTTC---EEEEECTT-----S
T ss_pred             cEEEeCChHHHHHHHHHHHhC--------------CCCEEEEeCCCchhHHHHHHHHHHHcCC---EEEEECCC-----C
Confidence            468899999998888776533              56778999999999888    6777787   78888875     8


Q ss_pred             HHHHHHHHHHhhhcCCCcEEEEEeccCCccccccCHHHHHHHHHH-cCCEEEEecccccccccccchhhhhcCCCCccEE
Q psy14299         80 CSFLEQTIQTSLAEKKIPLFVNATAGTTVLGAFDPLDEIATVCEK-YDLWMHVDACWGGSLIFSEKYSFVLKGINRANSV  158 (448)
Q Consensus        80 ~e~Le~~l~~~~~~~~~~~lVv~~~~~t~tG~~~~l~~I~~ia~~-~g~~l~VD~A~~~~~~~~~~~~~~~~~~~~aD~~  158 (448)
                      +++|++++++      ++++|++++++|++|.+.|+++|+++|++ ||+++++|++|+.+....+. .     . .+|++
T Consensus       137 ~~~l~~~i~~------~t~~v~l~~p~NptG~v~~l~~i~~la~~~~~~~li~De~~~~~~~~~~~-~-----~-~~di~  203 (404)
T 1e5e_A          137 PGEVKKHMKP------NTKIVYFETPANPTLKIIDMERVCKDAHSQEGVLVIADNTFCSPMITNPV-D-----F-GVDVV  203 (404)
T ss_dssp             TTHHHHHCCT------TEEEEEEESSCTTTCCCCCHHHHHHHHHTSTTCEEEEECTTTCTTTCCGG-G-----G-TCSEE
T ss_pred             HHHHHHhcCC------CCcEEEEECCCCCCCcccCHHHHHHHHHhhcCCEEEEECCCchhhhCCcc-c-----c-CCEEE
Confidence            8999998854      58899999999999999999999999999 99999999999987643211 1     1 47999


Q ss_pred             EECCccccCCCCc--eEEEEEecc
Q psy14299        159 SWNPHKMLGAPLQ--CSILLIKEK  180 (448)
Q Consensus       159 ~~s~hK~l~~P~g--~G~l~vr~~  180 (448)
                      +.|+||++++|.+  +|+++++++
T Consensus       204 ~~S~sK~~~~~g~ri~G~~~~~~~  227 (404)
T 1e5e_A          204 VHSATKYINGHTDVVAGLICGKAD  227 (404)
T ss_dssp             EEETTTTTTCSSCCCCEEEEECHH
T ss_pred             EEcCccccCCCCCCeEEEEEECHH
Confidence            9999999999987  688887654

>2ctz_A O-acetyl-L-homoserine sulfhydrylase; crystal, O-acetyl homoserine sulfhydrase, structural genomic structural genomics/proteomics initiative; HET: PLP; 2.60A {Thermus thermophilus} SCOP: c.67.1.3

Probab=99.79  E-value=6.3e-18  Score=172.94  Aligned_cols=140  Identities=10%  Similarity=0.030  Sum_probs=113.5

Q ss_pred             cEEEeCcHHHHHHHHHHHHHHhcCCcccccCCCCCCCeEEEecCCCchHHHHHH----HHhCCCCCcEEEE-ecCCCCCc
Q psy14299          4 KPFLLPGGSISNMYSICLARYRLDPDTKRKGLSHLPPLCMFTSEDSHYSMLKAA----HWLGIGMDNVIRV-KTNERGQM   78 (448)
Q Consensus         4 ~g~~t~ggT~an~~al~~a~~~~~~~~~~~G~~~~~~~~Vl~~~~~H~s~~~~~----~~~g~~~~~v~~v-~~~~~g~i   78 (448)
                      ..+++++||+|+..++.++..              +++.|+++..+|.+....+    +..|+   +++.+ +.+     
T Consensus        75 ~~v~~~sGt~A~~~~l~~~~~--------------~gd~vi~~~~~~~~~~~~~~~~~~~~g~---~~~~~~~~~-----  132 (421)
T 2ctz_A           75 AALATASGHAAQFLALTTLAQ--------------AGDNIVSTPNLYGGTFNQFKVTLKRLGI---EVRFTSREE-----  132 (421)
T ss_dssp             EEEEESSHHHHHHHHHHHHCC--------------TTCEEEECSCCCHHHHHHHHTHHHHTTC---EEEECCTTC-----
T ss_pred             ceEEecCHHHHHHHHHHHHhC--------------CCCEEEEeCCCchHHHHHHHHHHHHcCC---EEEEECCCC-----
Confidence            357788889999988876532              5678999999999988876    56677   67777 654     


Q ss_pred             CHHHHHHHHHHhhhcCCCcEEEEEeccCCccccccCHHHHHHHHHHcCCEEEEeccc-ccccccccchhhhhcCCCCccE
Q psy14299         79 ICSFLEQTIQTSLAEKKIPLFVNATAGTTVLGAFDPLDEIATVCEKYDLWMHVDACW-GGSLIFSEKYSFVLKGINRANS  157 (448)
Q Consensus        79 d~e~Le~~l~~~~~~~~~~~lVv~~~~~t~tG~~~~l~~I~~ia~~~g~~l~VD~A~-~~~~~~~~~~~~~~~~~~~aD~  157 (448)
                      |+++|++++++      ++++|++++++|++|.+.|+++|.++|++||+++++|++| +.+.. ....     +. .+|+
T Consensus       133 d~~~l~~~i~~------~~~~v~~~~~~n~~G~~~~l~~i~~~a~~~g~~livD~~~~~~g~~-~~~~-----~~-~~Di  199 (421)
T 2ctz_A          133 RPEEFLALTDE------KTRAWWVESIGNPALNIPDLEALAQAAREKGVALIVDNTFGMGGYL-LRPL-----AW-GAAL  199 (421)
T ss_dssp             CHHHHHHHCCT------TEEEEEEESSCTTTCCCCCHHHHHHHHHHHTCEEEEECGGGGGGTS-CCGG-----GG-TCSE
T ss_pred             CHHHHHHhhcc------CCeEEEEECCCCCCCcccCHHHHHHHHHHcCCEEEEECCccccccc-CCcc-----cc-CCeE
Confidence            89999999864      5889999999999999999999999999999999999999 76642 1111     11 4799


Q ss_pred             EEECCccccCCCCc-eEEEEEe
Q psy14299        158 VSWNPHKMLGAPLQ-CSILLIK  178 (448)
Q Consensus       158 ~~~s~hK~l~~P~g-~G~l~vr  178 (448)
                      ++.|+||++++|.+ .|.++++
T Consensus       200 ~~~s~~K~l~~~g~~~G~~~~~  221 (421)
T 2ctz_A          200 VTHSLTKWVGGHGAVIAGAIVD  221 (421)
T ss_dssp             EEEETTTTTTCSSCCCCEEEEE
T ss_pred             EEECCcccccCCCCcEEEEEEe
Confidence            99999999999874 6777775

>3ju7_A Putative PLP-dependent aminotransferase; NP_978343.1, struct genomics, joint center for structural genomics, JCSG; HET: LLP PGE; 2.19A {Bacillus cereus atcc 10987}

Probab=99.79  E-value=4.6e-18  Score=171.55  Aligned_cols=152  Identities=15%  Similarity=0.093  Sum_probs=115.5

Q ss_pred             cEEEeCcHHHHHHHHHHHHHHhcCCcccccCCCCCCCeEEEecCCCchHHHHHHHHhCCCCCcEEEEecC-CCCCcCHHH
Q psy14299          4 KPFLLPGGSISNMYSICLARYRLDPDTKRKGLSHLPPLCMFTSEDSHYSMLKAAHWLGIGMDNVIRVKTN-ERGQMICSF   82 (448)
Q Consensus         4 ~g~~t~ggT~an~~al~~a~~~~~~~~~~~G~~~~~~~~Vl~~~~~H~s~~~~~~~~g~~~~~v~~v~~~-~~g~id~e~   82 (448)
                      .+++|+|||+++.+++.++.-             .+++.|+++..+|.++..++...|.   +++.++++ +++.+|+++
T Consensus        55 ~~v~~~sgt~al~~al~~l~~-------------~~Gd~Vi~~~~~~~~~~~~~~~~G~---~~~~v~~~~~~~~~d~~~  118 (377)
T 3ju7_A           55 AVTTVANATLGLMAAIQLKKR-------------KKGKYALMPSFTFPATPLAAIWCGL---EPYFIDISIDDWYMDKTV  118 (377)
T ss_dssp             EEEEESCHHHHHHHHHHHHSC-------------TTCCEEEEESSSCTHHHHHHHHTTC---EEEEECBCTTTCSBCHHH
T ss_pred             eEEEeCCHHHHHHHHHHHcCC-------------CCcCEEEECCCCcHHHHHHHHHcCC---EEEEEecCCccCCcCHHH
Confidence            579999999999988876522             2678899999999999999999998   78899987 468999999


Q ss_pred             HHHHHHHhhhcCCCcEEEEEeccCCccccccCHHHHHHHHHHcCCEEEEecccccccccccchhhhh-cCCCCccEEEEC
Q psy14299         83 LEQTIQTSLAEKKIPLFVNATAGTTVLGAFDPLDEIATVCEKYDLWMHVDACWGGSLIFSEKYSFVL-KGINRANSVSWN  161 (448)
Q Consensus        83 Le~~l~~~~~~~~~~~lVv~~~~~t~tG~~~~l~~I~~ia~~~g~~l~VD~A~~~~~~~~~~~~~~~-~~~~~aD~~~~s  161 (448)
                      |++++....   .++++|+   +++++|...|+++|.++|+ ||+++|+|++|+.+.......   + .....+++++++
T Consensus       119 l~~~i~~~~---~~tk~v~---~~~~~G~~~~~~~i~~la~-~~~~vi~D~a~a~g~~~~~~~---~g~~~~d~~~~S~~  188 (377)
T 3ju7_A          119 LWDKIEELK---EEVAIVV---PYATFGSWMNLEEYEELEK-KGVPVVVDAAPGFGLMNGGMH---YGQDFSGMIIYSFH  188 (377)
T ss_dssp             HHHHHHHHG---GGEEEEC---CBCGGGBCCCCHHHHHHHH-TTCCBEEECTTCTTCEETTEE---TTTTCSSEEEEECB
T ss_pred             HHHHHhcCC---CCceEEE---EECCCCCccCHHHHHHHHh-cCCEEEEECCCccCCeECCEe---ccCCCCcEEEEECC
Confidence            999984311   1367776   4557899999999999999 999999999998776532110   1 111234566666


Q ss_pred             CccccCCCCceEEEEEeccch
Q psy14299        162 PHKMLGAPLQCSILLIKEKGL  182 (448)
Q Consensus       162 ~hK~l~~P~g~G~l~vr~~~~  182 (448)
                      +||++++ ...|+++.+++++
T Consensus       189 ~~K~l~~-g~gG~~~~~~~~l  208 (377)
T 3ju7_A          189 ATKPFGI-GEGGLIYSKNEED  208 (377)
T ss_dssp             TTSSSCC-BSCEEEEESCHHH
T ss_pred             CCCcCCC-CCcEEEEECCHHH
Confidence            8999987 4566666666544

>2ord_A Acoat, acetylornithine aminotransferase; TM1785, acetylornithine aminotransferase (EC 2.6.1.11) (ACOA structural genomics; HET: MSE PLP; 1.40A {Thermotoga maritima MSB8} PDB: 2e54_A*

Probab=99.79  E-value=2.6e-17  Score=166.24  Aligned_cols=156  Identities=18%  Similarity=0.154  Sum_probs=108.8

Q ss_pred             cEEEeCcHHHHHHHHHHHHHHhcCCcccccCCCCCCCeEEEecCCCchHHHHHHHHhCCCC---------CcEEEEecCC
Q psy14299          4 KPFLLPGGSISNMYSICLARYRLDPDTKRKGLSHLPPLCMFTSEDSHYSMLKAAHWLGIGM---------DNVIRVKTNE   74 (448)
Q Consensus         4 ~g~~t~ggT~an~~al~~a~~~~~~~~~~~G~~~~~~~~Vl~~~~~H~s~~~~~~~~g~~~---------~~v~~v~~~~   74 (448)
                      .++||+|||+++..++.+++....     .|-+ .++.+|+.+...|.+...+++..|...         ..+..+|.+ 
T Consensus        99 ~v~~~~gg~~a~~~al~~~~~~~~-----~~~~-~~~~vi~~~~~yh~~~~~~~~~~g~~~~~~~~~p~~~~~~~~~~~-  171 (397)
T 2ord_A           99 KVFFANTGTEANEAAIKIARKYGK-----KKSE-KKYRILSAHNSFHGRTLGSLTATGQPKYQKPFEPLVPGFEYFEFN-  171 (397)
T ss_dssp             EEEEESSHHHHHHHHHHHHHHHHH-----HHCT-TCCEEEEEBTCCCCSSHHHHHHSBCHHHHGGGCSCCTTEEEECTT-
T ss_pred             eEEEeCCHHHHHHHHHHHHHHHhh-----cCCC-CCceEEEEcCCcCCCchhhhhccCChhhccccCCCCCCeeEecCC-
Confidence            478999999999999887764100     0000 134566666777887777777777620         016666653 


Q ss_pred             CCCcCHHHHHHHHHHhhhcCCCcEEEEEeccCCcccc----ccCHHHHHHHHHHcCCEEEEecccccccccccc-hhhhh
Q psy14299         75 RGQMICSFLEQTIQTSLAEKKIPLFVNATAGTTVLGA----FDPLDEIATVCEKYDLWMHVDACWGGSLIFSEK-YSFVL  149 (448)
Q Consensus        75 ~g~id~e~Le~~l~~~~~~~~~~~lVv~~~~~t~tG~----~~~l~~I~~ia~~~g~~l~VD~A~~~~~~~~~~-~~~~~  149 (448)
                          |+++|++++++      ++++|++++++|++|.    .+++++|.++|++||+++++|++|+. ...... .....
T Consensus       172 ----d~~~l~~~l~~------~~~~v~~~~~~nptG~~~~~~~~l~~l~~l~~~~~~~li~De~~~~-~~~~g~~~~~~~  240 (397)
T 2ord_A          172 ----NVEDLRRKMSE------DVCAVFLEPIQGESGIVPATKEFLEEARKLCDEYDALLVFDEVQCG-MGRTGKLFAYQK  240 (397)
T ss_dssp             ----CHHHHHHHCCT------TEEEEEECSEECTTTCEECCHHHHHHHHHHHHHHTCEEEEECTTTT-TTTTSSSSHHHH
T ss_pred             ----CHHHHHHHhhc------CeEEEEEecccCCCCcccCCHHHHHHHHHHHHHcCCEEEEEecccC-CccCccchhhhh
Confidence                89999998853      5889999999999998    47899999999999999999999973 221111 11111


Q ss_pred             cCCCCccEEEECCccccCCCCceEEEEEecc
Q psy14299        150 KGINRANSVSWNPHKMLGAPLQCSILLIKEK  180 (448)
Q Consensus       150 ~~~~~aD~~~~s~hK~l~~P~g~G~l~vr~~  180 (448)
                      .+. ..|++++  +|+++++..+|+++++++
T Consensus       241 ~~~-~~d~~s~--sK~~~~G~r~G~~~~~~~  268 (397)
T 2ord_A          241 YGV-VPDVLTT--AKGLGGGVPIGAVIVNER  268 (397)
T ss_dssp             HTC-CCSEEEE--CGGGGTTSCCEEEEECST
T ss_pred             hCC-CCCeeee--ccccCCCcCeEEEEEchH
Confidence            122 2687755  799997667999888664

>3ezs_A Aminotransferase ASPB; NP_207418.1, structural genomics, JOI for structural genomics, JCSG; HET: MSE; 2.19A {Helicobacter pylori 26695} SCOP: c.67.1.0

Probab=99.79  E-value=2.5e-18  Score=172.03  Aligned_cols=151  Identities=11%  Similarity=-0.001  Sum_probs=114.9

Q ss_pred             cEEEeCcHHHHHHHHHHHHHHhcCCcccccCCCCCC--CeEEEecCCCchHHHHHHHHhCCCCCcEEEEecCCCCCcCHH
Q psy14299          4 KPFLLPGGSISNMYSICLARYRLDPDTKRKGLSHLP--PLCMFTSEDSHYSMLKAAHWLGIGMDNVIRVKTNERGQMICS   81 (448)
Q Consensus         4 ~g~~t~ggT~an~~al~~a~~~~~~~~~~~G~~~~~--~~~Vl~~~~~H~s~~~~~~~~g~~~~~v~~v~~~~~g~id~e   81 (448)
                      ..++|+|||+++..++.+...              +  ++.|+++...|.++...++..|.   +++.+|.++++.+++ 
T Consensus        84 ~i~~t~g~~~al~~~~~~~~~--------------~~~gd~vl~~~p~~~~~~~~~~~~g~---~~~~~~~~~~~~~~~-  145 (376)
T 3ezs_A           84 ELISTLGSREVLFNFPSFVLF--------------DYQNPTIAYPNPFYQIYEGAAKFIKA---KSLLMPLTKENDFTP-  145 (376)
T ss_dssp             GEEEESSSHHHHHHHHHHHTT--------------TCSSCEEEEEESCCTHHHHHHHHTTC---EEEEEECCGGGTSCC-
T ss_pred             HEEECcCcHHHHHHHHHHHcC--------------CCCCCEEEEecCCcHhHHHHHHHcCC---EEEEcccCCCCCcch-
Confidence            578999999999988877644              4  67889999999999999999998   799999887766666 


Q ss_pred             HHHHHHHHhhhcCCCcEEEEEeccCCccccccC---HHHHHHHHHHcCCEEEEecccccccccccchhh--hhc----CC
Q psy14299         82 FLEQTIQTSLAEKKIPLFVNATAGTTVLGAFDP---LDEIATVCEKYDLWMHVDACWGGSLIFSEKYSF--VLK----GI  152 (448)
Q Consensus        82 ~Le~~l~~~~~~~~~~~lVv~~~~~t~tG~~~~---l~~I~~ia~~~g~~l~VD~A~~~~~~~~~~~~~--~~~----~~  152 (448)
                      ++++++.+      ++++|++++++|++|.+.|   +++|.++|++||+++++|++|+...........  ...    ..
T Consensus       146 ~l~~~~~~------~~~~v~~~~p~nptG~~~~~~~l~~i~~~~~~~~~~li~De~~~~~~~~~~~~~~~~~~~~~~~~~  219 (376)
T 3ezs_A          146 SLNEKELQ------EVDLVILNSPNNPTGRTLSLEELISWVKLALKHDFILINDECYSEIYENTPPPSLLEACMLAGNEA  219 (376)
T ss_dssp             CCCHHHHH------HCSEEEECSSCTTTCCCCCHHHHHHHHHHHHHHTCEEEEECTTTTCBSSSCCCCHHHHHHHTTCTT
T ss_pred             hHHhhhcc------CCCEEEEcCCCCCcCCCCCHHHHHHHHHHHHHcCcEEEEEccchhhccCCCCCCHHHccccccccc
Confidence            77777765      3678999999999999877   677778899999999999999875542111110  000    01


Q ss_pred             CCccEEEECCccccCCC-CceEEEEEe
Q psy14299        153 NRANSVSWNPHKMLGAP-LQCSILLIK  178 (448)
Q Consensus       153 ~~aD~~~~s~hK~l~~P-~g~G~l~vr  178 (448)
                      ...++++.+++|+++.| ..+|+++.+
T Consensus       220 ~~~~i~~~s~sK~~g~~G~r~G~~~~~  246 (376)
T 3ezs_A          220 FKNVLVIHSLSKRSSAPGLRSGFIAGD  246 (376)
T ss_dssp             CTTEEEEEESTTTTTCGGGCCEEEEEC
T ss_pred             cCcEEEEecchhccCCccceeEEEeeC
Confidence            23578899999999643 456777653

>3pj0_A LMO0305 protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-biology, lyase; HET: LLP MSE; 1.80A {Listeria monocytogenes}

Probab=99.79  E-value=3.2e-18  Score=170.12  Aligned_cols=154  Identities=13%  Similarity=0.105  Sum_probs=109.7

Q ss_pred             EEEeCcHHHHHHHHHHHHHHhcCCcccccCCCCCCCeEEEecCCCchHHHHH---HHHhCCCCCcEEEEecCCCCCcCHH
Q psy14299          5 PFLLPGGSISNMYSICLARYRLDPDTKRKGLSHLPPLCMFTSEDSHYSMLKA---AHWLGIGMDNVIRVKTNERGQMICS   81 (448)
Q Consensus         5 g~~t~ggT~an~~al~~a~~~~~~~~~~~G~~~~~~~~Vl~~~~~H~s~~~~---~~~~g~~~~~v~~v~~~~~g~id~e   81 (448)
                      .++++|||+++.+++.++..+            .+..+|+++...|.+....   +...|.   +++.++. +++.+|++
T Consensus        66 ~i~~~~g~~a~~~a~~~~~~~------------g~~~vvi~~~~~~~~~~~~~~~~~~~g~---~~~~v~~-~~~~~d~~  129 (359)
T 3pj0_A           66 AVFFPSGTMAQQIALRIWADR------------KENRRVAYHPLSHLEIHEQDGLKELQQI---TPLLLGT-ANQLLTID  129 (359)
T ss_dssp             EEEESCHHHHHHHHHHHHHHH------------HTCCEEEECTTCHHHHSSTTHHHHHHCC---EEEECSC-TTSCCCHH
T ss_pred             EEEeCCHHHHHHHHHHHHHhc------------CCCcEEEEeccceeeehhcchHHHhcCc---eEEecCC-cCCCcCHH
Confidence            478899999999998887765            1333577788888776532   245677   7888886 57899999


Q ss_pred             HHHHHHHHhhhcCCCcEEEEEeccCCcc-ccccCHHHH---HHHHHHcCCEEEEeccccccccccc-chhhhhcCCCCcc
Q psy14299         82 FLEQTIQTSLAEKKIPLFVNATAGTTVL-GAFDPLDEI---ATVCEKYDLWMHVDACWGGSLIFSE-KYSFVLKGINRAN  156 (448)
Q Consensus        82 ~Le~~l~~~~~~~~~~~lVv~~~~~t~t-G~~~~l~~I---~~ia~~~g~~l~VD~A~~~~~~~~~-~~~~~~~~~~~aD  156 (448)
                      +|+++ .      .++++|+++.++|++ |.+.|.+++   .++|++||+++|+|++|..+..... .....+.  ..+|
T Consensus       130 ~l~~~-~------~~~~~v~~~~p~n~~~G~~~~~~~l~~l~~~~~~~~~~li~D~a~~~~~~~~~~~~~~~~~--~~~d  200 (359)
T 3pj0_A          130 DIKSL-R------EPVSSVLIELPQREIGGQLPAFEELEKISEYCHEQGISLHLDGARLWEITPFYQKSAEEIC--ALFD  200 (359)
T ss_dssp             HHHTC-S------SCCSEEEEESSBGGGTSBCCCHHHHHHHHHHHHHHTCEEEEEETTCGGGHHHHTCCHHHHH--TTCS
T ss_pred             HHHhc-c------CCceEEEEEecccCCCcccCCHHHHHHHHHHHHHcCCEEEEECcchhcchhhhCCCHHHhh--ccCC
Confidence            99887 2      357899999888877 688775555   9999999999999999875543111 0011111  2468


Q ss_pred             EEEECCccccCCCCceEEEEEeccchhhh
Q psy14299        157 SVSWNPHKMLGAPLQCSILLIKEKGLLHQ  185 (448)
Q Consensus       157 ~~~~s~hK~l~~P~g~G~l~vr~~~~~~~  185 (448)
                      ++++++||++++|.| |+++. ++++...
T Consensus       201 ~~~~s~sK~~~~~~g-g~~~~-~~~l~~~  227 (359)
T 3pj0_A          201 SVYVSFYKGIGGIAG-AILAG-NDDFVQE  227 (359)
T ss_dssp             EEEEESSSTTCCSSC-EEEEE-CHHHHHH
T ss_pred             EEEEeccccCCCcce-EEEEC-CHHHHHH
Confidence            999999999999966 65554 4444433

>3lws_A Aromatic amino acid beta-eliminating lyase/threonine aldolase; structural genomics, joint center for structural genomics, JCSG; HET: LLP MSE; 2.00A {Exiguobacterium sibiricum}

Probab=99.79  E-value=3.5e-18  Score=169.86  Aligned_cols=152  Identities=13%  Similarity=0.088  Sum_probs=110.5

Q ss_pred             EEEeCcHHHHHHHHHHHHHHhcCCcccccCCCCCCCeEEEecCCCchHHHH---HHHHhCCCCCcEEEEecCCCCCcCHH
Q psy14299          5 PFLLPGGSISNMYSICLARYRLDPDTKRKGLSHLPPLCMFTSEDSHYSMLK---AAHWLGIGMDNVIRVKTNERGQMICS   81 (448)
Q Consensus         5 g~~t~ggT~an~~al~~a~~~~~~~~~~~G~~~~~~~~Vl~~~~~H~s~~~---~~~~~g~~~~~v~~v~~~~~g~id~e   81 (448)
                      .++++|||+++.+++.++..+            .++.+|+++...|++...   .+...|.   +++.++. +++.+|++
T Consensus        65 ~i~~~~G~~a~~~al~~~~~~------------gd~~~vi~~~~~~~~~~~~~~~~~~~g~---~~~~v~~-~~~~~d~~  128 (357)
T 3lws_A           65 AVFFPSGTMAQQVALRIWSDE------------TDNRTVAYHPLCHLEIHEQDGLKELHPI---ETILVGA-ADRLMTLD  128 (357)
T ss_dssp             EEEESCHHHHHHHHHHHHHHH------------HTCCEEEECTTCHHHHSSTTHHHHHSSC---EEEECSC-TTSCCCHH
T ss_pred             EEEecCcHHHHHHHHHHHhhc------------CCCcEEEecccceeeeeccchhhhccCc---EEEEecC-CCCCcCHH
Confidence            578899999999988877764            122278889899988765   3445566   6777774 56789999


Q ss_pred             HHHHHHHHhhhcCCCcEEEEEeccCCcc-ccccC---HHHHHHHHHHcCCEEEEecccccccccc--cchhhhhcCCCCc
Q psy14299         82 FLEQTIQTSLAEKKIPLFVNATAGTTVL-GAFDP---LDEIATVCEKYDLWMHVDACWGGSLIFS--EKYSFVLKGINRA  155 (448)
Q Consensus        82 ~Le~~l~~~~~~~~~~~lVv~~~~~t~t-G~~~~---l~~I~~ia~~~g~~l~VD~A~~~~~~~~--~~~~~~~~~~~~a  155 (448)
                      +|+++.        ++++|+++.++|++ |.+.|   +++|.++|++||+++|+|+||..+....  .......   ..+
T Consensus       129 ~l~~~~--------~~~~v~~~~p~np~~G~~~~~~~l~~i~~~~~~~~~~li~D~a~~~~~~~~~~~~~~~~~---~~~  197 (357)
T 3lws_A          129 EIKALP--------DIACLLLELPQREIGGVAPAFSELETISRYCRERGIRLHLDGARLFEMLPYYEKTAAEIA---GLF  197 (357)
T ss_dssp             HHHTCC--------SCSEEEEESSBGGGTSBCCCHHHHHHHHHHHHHTTCEEEEEETTHHHHHHHHTCCHHHHH---TTS
T ss_pred             HHhcCc--------CcceEEEEcccccCCceeCCHHHHHHHHHHHHHcCCEEEEECchhhhhhhhcCCChHHHH---hcC
Confidence            998862        26789999999988 88765   8999999999999999999987322211  1111111   246


Q ss_pred             cEEEECCccccCCCCceEEEEEeccchhhh
Q psy14299        156 NSVSWNPHKMLGAPLQCSILLIKEKGLLHQ  185 (448)
Q Consensus       156 D~~~~s~hK~l~~P~g~G~l~vr~~~~~~~  185 (448)
                      |.++.++||++++|.| |+++. ++++...
T Consensus       198 d~~~~s~sK~~~~~~g-g~~~~-~~~~~~~  225 (357)
T 3lws_A          198 DSIYISFYKGLGGIAG-AILAG-PAAFCQT  225 (357)
T ss_dssp             SEEEEESSSTTCCSSC-EEEEE-CHHHHHH
T ss_pred             CEEEEeccccCCCCce-EEEEc-CHHHHHH
Confidence            8999999999988988 77655 4444433

>3ppl_A Aspartate aminotransferase; dimer, PLP-dependent transferase-like fold structural genomics, joint center for structural genomics; HET: MSE PLP UNL; 1.25A {Corynebacterium glutamicum}

Probab=99.79  E-value=2e-17  Score=168.88  Aligned_cols=163  Identities=12%  Similarity=-0.021  Sum_probs=116.0

Q ss_pred             cEEEeCcHHHHHH--HHHHHHHH--hcCCcccccCCCCCCCeEEEecCCCchHHHHHHHHhCCCCCcEEEEecCCCCCcC
Q psy14299          4 KPFLLPGGSISNM--YSICLARY--RLDPDTKRKGLSHLPPLCMFTSEDSHYSMLKAAHWLGIGMDNVIRVKTNERGQMI   79 (448)
Q Consensus         4 ~g~~t~ggT~an~--~al~~a~~--~~~~~~~~~G~~~~~~~~Vl~~~~~H~s~~~~~~~~g~~~~~v~~v~~~~~g~id   79 (448)
                      ..++|+|+|+++.  +++.+...  +-.+....    ..+++.|+++..+|.++...++..|.   +++.+|.+++| +|
T Consensus        97 ~i~~t~G~~~al~~~~~~~~l~~~~~g~~~~~~----~~~gd~V~v~~p~y~~~~~~~~~~g~---~~~~v~~~~~g-~d  168 (427)
T 3ppl_A           97 QVLAGDASSLNIMFDVISWSYIFGNNDSVQPWS----KEETVKWICPVPGYDRHFSITERFGF---EMISVPMNEDG-PD  168 (427)
T ss_dssp             GEEECSSCHHHHHHHHHHHHHHHCCTTCSSCGG----GSSCCEEEEEESCCHHHHHHHHHTTC---EEEEEEEETTE-EC
T ss_pred             eEEEeCCcHHHHHHHHHHHHHhccCCccccccc----CCCCCEEEEcCCCcHHHHHHHHHcCC---EEEEeCCCCCC-CC
Confidence            5789999999984  56555544  10000000    00267899999999999999999998   79999998776 99


Q ss_pred             HHHHHHHHHHhhhcCCCcEEEEEe-ccCCccccccCHH---HHHHHH-HHcCCEEEEecccccccccccc-----hhhhh
Q psy14299         80 CSFLEQTIQTSLAEKKIPLFVNAT-AGTTVLGAFDPLD---EIATVC-EKYDLWMHVDACWGGSLIFSEK-----YSFVL  149 (448)
Q Consensus        80 ~e~Le~~l~~~~~~~~~~~lVv~~-~~~t~tG~~~~l~---~I~~ia-~~~g~~l~VD~A~~~~~~~~~~-----~~~~~  149 (448)
                      +++|++++++     .++++|+++ +++|+||.+.|.+   +|.++| ++||+++|+|++|+...+....     .....
T Consensus       169 ~~~l~~~l~~-----~~~~~v~~~p~~~NPtG~~~~~~~~~~l~~~a~~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~  243 (427)
T 3ppl_A          169 MDAVEELVKN-----PQVKGMWVVPVFSNPTGFTVTEDVAKRLSAMETAAPDFRVVWDNAYAVHTLTDEFPEVIDIVGLG  243 (427)
T ss_dssp             HHHHHHHTTS-----TTEEEEEECCSSCTTTCCCCCHHHHHHHHHCCCSSTTCEEEEECTTTTCBSSSCCCCCCCHHHHH
T ss_pred             HHHHHHHHhc-----CCCeEEEECCCCCCCCCccCCHHHHHHHHHHHhhcCCCEEEEECCCcccccCCCCCCccchhhhh
Confidence            9999999842     257788766 7899999998877   888888 9999999999999864332111     00000


Q ss_pred             --cCCCCccEEEECCccccCCCCceEEEEEec
Q psy14299        150 --KGINRANSVSWNPHKMLGAPLQCSILLIKE  179 (448)
Q Consensus       150 --~~~~~aD~~~~s~hK~l~~P~g~G~l~vr~  179 (448)
                        .+....++++.|++|+++...++|+++..+
T Consensus       244 ~~~~~~~~~i~~~S~SK~~~~G~r~G~~~~~~  275 (427)
T 3ppl_A          244 EAAGNPNRFWAFTSTSKITLAGAGVSFFLTSA  275 (427)
T ss_dssp             HHTTCTTSEEEEEESTTTSCTTSSCEEEECCH
T ss_pred             hccCCCCcEEEEechhhccCcCccEEEEEcCH
Confidence              012235688899999966556788776643

>3jtx_A Aminotransferase; NP_283882.1, structural genomics, joint CE structural genomics, JCSG, protein structure initiative; HET: LLP MES; 1.91A {Neisseria meningitidis Z2491}

Probab=99.79  E-value=7e-18  Score=169.93  Aligned_cols=156  Identities=10%  Similarity=-0.018  Sum_probs=115.2

Q ss_pred             cEEEeCcHHHHHHHHHHHHHHhcCCcccccCCCCCCCeEEEecCCCchHHHHHHHHhCCCCCcEEEEecCCCC-CcCHHH
Q psy14299          4 KPFLLPGGSISNMYSICLARYRLDPDTKRKGLSHLPPLCMFTSEDSHYSMLKAAHWLGIGMDNVIRVKTNERG-QMICSF   82 (448)
Q Consensus         4 ~g~~t~ggT~an~~al~~a~~~~~~~~~~~G~~~~~~~~Vl~~~~~H~s~~~~~~~~g~~~~~v~~v~~~~~g-~id~e~   82 (448)
                      ..++|+|||+++..++.+++.+        |-. ..++.|+++...|.++...++..|.   +++.+|.++++ .+|+++
T Consensus        93 ~i~~t~g~~~al~~~~~~~~~~--------g~~-~~~d~vl~~~p~~~~~~~~~~~~g~---~~~~v~~~~~g~~~d~~~  160 (396)
T 3jtx_A           93 EILPVLGSREALFSFVQTVLNP--------VSD-GIKPAIVSPNPFYQIYEGATLLGGG---EIHFANCPAPSFNPDWRS  160 (396)
T ss_dssp             SEEEESSHHHHHHHHHHHHCCC------------CCCCEEEEEESCCHHHHHHHHHTTC---EEEEEECCTTTCCCCGGG
T ss_pred             eEEEcCCcHHHHHHHHHHHhCC--------CCc-cCCCEEEEcCCCcHhHHHHHHHcCC---EEEEeecCCCCCccCHHH
Confidence            6899999999998888776442        000 0015788899999999999999998   78899986544 789999


Q ss_pred             HHHHHHHhhhcCCCcEEEEEeccCCccccccCHHH---HHHHHHHcCCEEEEecccccccccccchhhhh------cCCC
Q psy14299         83 LEQTIQTSLAEKKIPLFVNATAGTTVLGAFDPLDE---IATVCEKYDLWMHVDACWGGSLIFSEKYSFVL------KGIN  153 (448)
Q Consensus        83 Le~~l~~~~~~~~~~~lVv~~~~~t~tG~~~~l~~---I~~ia~~~g~~l~VD~A~~~~~~~~~~~~~~~------~~~~  153 (448)
                      |++++.+      ++++|++++++|++|.+.|.++   |.++|++||+++++|++|+.............      ....
T Consensus       161 l~~~~~~------~~~~v~l~~p~nptG~~~~~~~l~~i~~~~~~~~~~li~De~~~~~~~~~~~~~~~~~~~~~~~~~~  234 (396)
T 3jtx_A          161 ISEEVWK------RTKLVFVCSPNNPSGSVLDLDGWKEVFDLQDKYGFIIASDECYSEIYFDGNKPLGCLQAAAQLGRSR  234 (396)
T ss_dssp             SCHHHHH------TEEEEEEESSCTTTCCCCCHHHHHHHHHHHHHHCCEEEEECTTTTCCSTTCCCCCHHHHHHHTTCCC
T ss_pred             HHHhhcc------CcEEEEEECCCCCCCCcCCHHHHHHHHHHHHHcCCEEEEEccccccccCCCCCchHHhhhhhccccc
Confidence            9999976      4789999999999999977555   99999999999999999987543210000000      0002


Q ss_pred             CccEEEECCccccCCC-CceEEEEE
Q psy14299        154 RANSVSWNPHKMLGAP-LQCSILLI  177 (448)
Q Consensus       154 ~aD~~~~s~hK~l~~P-~g~G~l~v  177 (448)
                      ..++++.+++|.++.| ..+|+++.
T Consensus       235 ~~~i~~~s~sK~~~~~G~r~G~~~~  259 (396)
T 3jtx_A          235 QKLLMFTSLSKRSNVPGLRSGFVAG  259 (396)
T ss_dssp             TTEEEEEESTTTSSCGGGCCEEEEE
T ss_pred             CcEEEEeccccccCCcccceEEEEe
Confidence            3578889999976644 44677655

>2ez2_A Beta-tyrosinase, tyrosine phenol-lyase; PLP-dependent enzyme, pyridoxal-5'-phosphate, domain lyase; 1.85A {Citrobacter freundii} PDB: 2ez1_A 2vlf_A* 2vlh_A* 2yct_A* 1tpl_A 2tpl_A* 2ycn_A* 2yhk_A* 2ycp_A* 1c7g_A*

Probab=99.78  E-value=7.8e-18  Score=173.31  Aligned_cols=157  Identities=11%  Similarity=0.035  Sum_probs=113.4

Q ss_pred             cEEEeCcHHHHHHHHHHHHHHhcCCcccccCCCCCCCeEEEecCCCc-hHHHHHHHHhCCCCCcEEEEecCC--------
Q psy14299          4 KPFLLPGGSISNMYSICLARYRLDPDTKRKGLSHLPPLCMFTSEDSH-YSMLKAAHWLGIGMDNVIRVKTNE--------   74 (448)
Q Consensus         4 ~g~~t~ggT~an~~al~~a~~~~~~~~~~~G~~~~~~~~Vl~~~~~H-~s~~~~~~~~g~~~~~v~~v~~~~--------   74 (448)
                      .+++|+|||+++..++.++..              +++  +++..+| .++..+++..|.   +++.++.++        
T Consensus        92 ~~~~~~~gt~a~~~al~~l~~--------------~gd--i~~~~~~~~~~~~~~~~~G~---~~~~v~~~~~~~~~~~~  152 (456)
T 2ez2_A           92 HIVPTHQGRGAENLLSQLAIK--------------PGQ--YVAGNMYFTTTRYHQEKNGA---VFVDIVRDEAHDAGLNI  152 (456)
T ss_dssp             EEEEESSHHHHHHHHHHHHCC--------------TTC--EEEESSCCHHHHHHHHHTTC---EEEECBCGGGGCTTCCC
T ss_pred             cEEEeCCcHHHHHHHHHHhCC--------------CCC--EeccccccchhHHHHHHcCC---EEEEecccccccccccc
Confidence            478999999999998877633              455  4456677 888888898888   788888763        


Q ss_pred             --CCCcCHHHHHHHHHHhhhcCCCcEEEEEeccCC-ccccccC---HHHHHHHHHHcCCEEEEecccccc---------c
Q psy14299         75 --RGQMICSFLEQTIQTSLAEKKIPLFVNATAGTT-VLGAFDP---LDEIATVCEKYDLWMHVDACWGGS---------L  139 (448)
Q Consensus        75 --~g~id~e~Le~~l~~~~~~~~~~~lVv~~~~~t-~tG~~~~---l~~I~~ia~~~g~~l~VD~A~~~~---------~  139 (448)
                        ++.+|+++|++++++..  ...+++|+++.++| ++|.+.|   +++|.++|++||+++|+|++|+.|         .
T Consensus       153 ~~~~~~d~~~l~~~i~~~t--~~~~~~v~l~~p~n~ptG~~~~~~~l~~i~~la~~~~i~li~De~~~~g~~~~~~~~~~  230 (456)
T 2ez2_A          153 AFKGDIDLKKLQKLIDEKG--AENIAYICLAVTVNLAGGQPVSMANMRAVRELTEAHGIKVFYDATRCVENAYFIKEQEQ  230 (456)
T ss_dssp             SCTTCBCHHHHHHHHHHHC--GGGEEEEEEESSBTTTTSBCCCHHHHHHHHHHHHHTTCCEEEECTTHHHHHHHHHHHST
T ss_pred             cccCCCCHHHHHHHHHhcc--ccceeEEEEeccCCCCCCccCCHHHHHHHHHHHHHcCCeEEEEcccccccccccccccc
Confidence              26899999999997631  11347888888887 8998876   999999999999999999999874         1


Q ss_pred             ccccchh-h---hhcCCCCccEEEECCccccCCCCceEEEEEeccchhh
Q psy14299        140 IFSEKYS-F---VLKGINRANSVSWNPHKMLGAPLQCSILLIKEKGLLH  184 (448)
Q Consensus       140 ~~~~~~~-~---~~~~~~~aD~~~~s~hK~l~~P~g~G~l~vr~~~~~~  184 (448)
                      ....... .   ...  ...|++++|+||+++.| ..|+++.+++++..
T Consensus       231 ~~~g~~~~~~~~~~~--~~~d~~~~S~kk~~~~~-~gG~~~~~~~~~~~  276 (456)
T 2ez2_A          231 GFENKSIAEIVHEMF--SYADGCTMSGKKDCLVN-IGGFLCMNDDEMFS  276 (456)
T ss_dssp             TCTTSCHHHHHHHHH--TTCSEEEEETTTTTCCS-SCEEEEESCHHHHH
T ss_pred             ccCCcchhhhhhhhc--ccCCEEEEeCcccCCCC-ceeEEEECCHHHHH
Confidence            1111100 0   011  13588888899987744 46777664554433

>3e2y_A Kynurenine-oxoglutarate transaminase 3; alpha beta protein, PLP dependent protein, aminotransferase, pyridoxal phosphate, transferase; HET: GLN PMP; 2.26A {Mus musculus} SCOP: c.67.1.0 PDB: 2zjg_A* 3e2f_A* 3e2z_A*

Probab=99.78  E-value=5.2e-18  Score=171.69  Aligned_cols=153  Identities=13%  Similarity=-0.011  Sum_probs=116.5

Q ss_pred             cEEEeCcHHHHHHHHHHHHHHhcCCcccccCCCCCCCeEEEecCCCchHHHHHHHHhCCCCCcEEEEecC----------
Q psy14299          4 KPFLLPGGSISNMYSICLARYRLDPDTKRKGLSHLPPLCMFTSEDSHYSMLKAAHWLGIGMDNVIRVKTN----------   73 (448)
Q Consensus         4 ~g~~t~ggT~an~~al~~a~~~~~~~~~~~G~~~~~~~~Vl~~~~~H~s~~~~~~~~g~~~~~v~~v~~~----------   73 (448)
                      ..++|+|||+++..++.++..              +++.|+++...|.++...++..|.   +++.++.+          
T Consensus        87 ~i~~~~g~~~a~~~~~~~~~~--------------~gd~vl~~~p~~~~~~~~~~~~g~---~~~~~~~~~~~~~g~~~~  149 (410)
T 3e2y_A           87 EILVAVGAYGSLFNSIQGLVD--------------PGDEVIIMVPFYDCYEPMVRMAGA---VPVFIPLRSKPTDGMKWT  149 (410)
T ss_dssp             SEEEESHHHHHHHHHHHHHCC--------------TTCEEEEEESCCTTHHHHHHHTTC---EEEEEECEECCCCSSCCB
T ss_pred             CEEEeCCcHHHHHHHHHHhcC--------------CCCEEEEeCCCchhhHHHHHHcCC---EEEEEecccccccccccc
Confidence            689999999999988877643              566788899999999999999988   78888875          


Q ss_pred             -CCCCcCHHHHHHHHHHhhhcCCCcEEEEEeccCCccccc---cCHHHHHHHHHHcCCEEEEecccccccccccchhh--
Q psy14299         74 -ERGQMICSFLEQTIQTSLAEKKIPLFVNATAGTTVLGAF---DPLDEIATVCEKYDLWMHVDACWGGSLIFSEKYSF--  147 (448)
Q Consensus        74 -~~g~id~e~Le~~l~~~~~~~~~~~lVv~~~~~t~tG~~---~~l~~I~~ia~~~g~~l~VD~A~~~~~~~~~~~~~--  147 (448)
                       .++.+|+++|++++++      ++++|++++++|++|.+   .++++|+++|++||+++++|++|+...........  
T Consensus       150 ~~~~~~d~~~l~~~~~~------~~~~v~~~~p~nptG~~~~~~~l~~l~~~~~~~~~~li~De~~~~~~~~~~~~~~~~  223 (410)
T 3e2y_A          150 SSDWTFDPRELESKFSS------KTKAIILNTPHNPLGKVYTRQELQVIADLCVKHDTLCISDEVYEWLVYTGHTHVKIA  223 (410)
T ss_dssp             GGGEECCHHHHHTTCCT------TEEEEEEESSCTTTCCCCCHHHHHHHHHHHHHHTCEEEEECTTTTCBCTTCCCCCGG
T ss_pred             ccCCcCCHHHHHhhcCC------CceEEEEeCCCCCCCcCcCHHHHHHHHHHHHHcCcEEEEEhhhhhcccCCCCCCCHH
Confidence             3457899999998853      58899999999999998   67999999999999999999999865432111000  


Q ss_pred             hhcCCCCccEEEECCccccCCC-CceEEEEEec
Q psy14299        148 VLKGINRANSVSWNPHKMLGAP-LQCSILLIKE  179 (448)
Q Consensus       148 ~~~~~~~aD~~~~s~hK~l~~P-~g~G~l~vr~  179 (448)
                      ........++++.+++|+++.| ..+|+++.++
T Consensus       224 ~~~~~~~~~i~~~S~sK~~g~~G~r~G~~~~~~  256 (410)
T 3e2y_A          224 TLPGMWERTITIGSAGKTFSVTGWKLGWSIGPA  256 (410)
T ss_dssp             GSTTCGGGEEEEEEHHHHSSCGGGCCEEEECCH
T ss_pred             HcCCccCeEEEEecchhhcCCCCceEEEEEECH
Confidence            0111112347788999999743 4577776644

>2eh6_A Acoat, acetylornithine aminotransferase; ARGD, structural genomics, NPPSFA, national project on prote structural and functional analyses; HET: PLP; 1.90A {Aquifex aeolicus}

Probab=99.78  E-value=4.6e-17  Score=162.73  Aligned_cols=154  Identities=18%  Similarity=0.153  Sum_probs=103.1

Q ss_pred             cEEEeCcHHHHHHHHHHHHHHhcCCcccccCCCCCCC-eEEEecCCC-chHHHHHHHHhCCCC---------CcEEEEec
Q psy14299          4 KPFLLPGGSISNMYSICLARYRLDPDTKRKGLSHLPP-LCMFTSEDS-HYSMLKAAHWLGIGM---------DNVIRVKT   72 (448)
Q Consensus         4 ~g~~t~ggT~an~~al~~a~~~~~~~~~~~G~~~~~~-~~Vl~~~~~-H~s~~~~~~~~g~~~---------~~v~~v~~   72 (448)
                      .+++|+|||+++..++.+++...     ..+   .++ +.|++++.+ |.+...+....+...         ..+..++.
T Consensus        88 ~v~~~~g~t~a~~~~~~~~~~~~-----~~~---~~g~~~vl~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  159 (375)
T 2eh6_A           88 KVFFANSGTESVEAAIKLARKYW-----RDK---GKNKWKFISFENSFHGRTYGSLSATGQPKFHKGFEPLVPGFSYAKL  159 (375)
T ss_dssp             EEEEESSHHHHHHHHHHHHHHHH-----HHT---TCCCCEEEEEBTCCCCSSHHHHHHCBCGGGTTTTCSCCSSEEEECT
T ss_pred             eEEEeCchHHHHHHHHHHHHHHh-----ccC---CCCCCEEEEECCCcCCCchhhhhhcCCccccCCCCCCCCCceeCCC
Confidence            57899999999998887643210     000   133 556666555 555554444433210         01344443


Q ss_pred             CCCCCcCHHHHHHHHHHhhhcCCCcEEEEEeccCCccccccC----HHHHHHHHHHcCCEEEEeccccc-ccccccchhh
Q psy14299         73 NERGQMICSFLEQTIQTSLAEKKIPLFVNATAGTTVLGAFDP----LDEIATVCEKYDLWMHVDACWGG-SLIFSEKYSF  147 (448)
Q Consensus        73 ~~~g~id~e~Le~~l~~~~~~~~~~~lVv~~~~~t~tG~~~~----l~~I~~ia~~~g~~l~VD~A~~~-~~~~~~~~~~  147 (448)
                           +|+++|++++++      ++++|+++++++++|.+.|    +++|.++|++||+++++|++|+. +... .....
T Consensus       160 -----~d~~~l~~~l~~------~~~~v~~~~~~~~tG~~~~~~~~l~~i~~~~~~~~~~li~De~~~~~~~~~-~~~~~  227 (375)
T 2eh6_A          160 -----NDIDSVYKLLDE------ETAGIIIEVIQGEGGVNEASEDFLSKLQEICKEKDVLLIIDEVQTGIGRTG-EFYAY  227 (375)
T ss_dssp             -----TCHHHHHTTCCT------TEEEEEECSEETTTTSEECCHHHHHHHHHHHHHHTCEEEEECTTTTTTTTS-SSSGG
T ss_pred             -----chHHHHHHHhcC------CeEEEEEeCccCCCCCcCCCHHHHHHHHHHHHHhCCEEEEeccccCCCCCC-cchhh
Confidence                 489999988853      5789999999999999988    99999999999999999999993 2211 00111


Q ss_pred             hhcCCCCccEEEECCccccCCCCceEEEEEecc
Q psy14299        148 VLKGINRANSVSWNPHKMLGAPLQCSILLIKEK  180 (448)
Q Consensus       148 ~~~~~~~aD~~~~s~hK~l~~P~g~G~l~vr~~  180 (448)
                      ...+. ..|++++|  |+++++.++|+++++++
T Consensus       228 ~~~~~-~~d~~s~S--K~~~~g~~~G~~~~~~~  257 (375)
T 2eh6_A          228 QHFNL-KPDVIALA--KGLGGGVPIGAILAREE  257 (375)
T ss_dssp             GGGTC-CCSEEEEC--GGGGTTSCCEEEEEEHH
T ss_pred             hhcCC-CCCEEEEc--ccccCCCCeEEEEEcHH
Confidence            11121 36888777  98888888999998763

>3qgu_A LL-diaminopimelate aminotransferase; L-lysine, pyridoxal-5' phosphate, chamydomonas reinhardtii; HET: GOL; 1.55A {Chlamydomonas reinhardtii}

Probab=99.78  E-value=6e-18  Score=173.82  Aligned_cols=289  Identities=10%  Similarity=0.070  Sum_probs=179.9

Q ss_pred             cEEEeCcHHHHHHHHHHHHHHhcCCcccccCCCCCCCeEEEecCCCchHHHHHHHHhCCCCCc----------EEEEecC
Q psy14299          4 KPFLLPGGSISNMYSICLARYRLDPDTKRKGLSHLPPLCMFTSEDSHYSMLKAAHWLGIGMDN----------VIRVKTN   73 (448)
Q Consensus         4 ~g~~t~ggT~an~~al~~a~~~~~~~~~~~G~~~~~~~~Vl~~~~~H~s~~~~~~~~g~~~~~----------v~~v~~~   73 (448)
                      ..++|+|+++++..+ .....              +++.|+++...|.++...++..|.   +          ++.+|.+
T Consensus       134 ~i~~t~G~~~al~~~-~~l~~--------------~gd~Vl~~~p~~~~~~~~~~~~g~---~g~~~~~~~~~~~~~~~~  195 (449)
T 3qgu_A          134 EIFISDGSKCDIARI-QMMFG--------------SKPTVAVQDPSYPVYVDTSVMMGM---TGDHNGTGFDGIEYMVCN  195 (449)
T ss_dssp             GEEEESCHHHHHHHH-HHHHC--------------SSSCEEEEESCCTHHHHHHHHHTC---SCCBCSSSBTTEEEEECC
T ss_pred             HEEEccCHHHHHHHH-HHHhC--------------CCCEEEEcCCCChhHHHHHHHcCC---cccccccccceeEEEecc
Confidence            578999999997766 44333              566788999999999999999998   5          8888987


Q ss_pred             CCCCcCHHHHHHHHHHhhhcCCCcEEEEEeccCCccccccC---HHHHHHHHHHcCCEEEEecccccccccccc-hh-hh
Q psy14299         74 ERGQMICSFLEQTIQTSLAEKKIPLFVNATAGTTVLGAFDP---LDEIATVCEKYDLWMHVDACWGGSLIFSEK-YS-FV  148 (448)
Q Consensus        74 ~~g~id~e~Le~~l~~~~~~~~~~~lVv~~~~~t~tG~~~~---l~~I~~ia~~~g~~l~VD~A~~~~~~~~~~-~~-~~  148 (448)
                      +++.++++ +++        ..++++|++++++|++|.+.+   +++|+++|++||+++++|++|+........ .. ..
T Consensus       196 ~~~~~~~~-~~~--------~~~~~~v~l~~p~NPtG~~~~~~~l~~l~~l~~~~~~~li~Dea~~~~~~~~~~~~~~~~  266 (449)
T 3qgu_A          196 PDNHFFPD-LSK--------AKRTDIIFFCSPNNPTGAAATRAQLTELVNFARKNGSILVYDAAYALYISNPDCPKTIYE  266 (449)
T ss_dssp             GGGTTCCC-GGG--------CCCCSEEEEESSCTTTCCCCCHHHHHHHHHHHHHHTCEEEEECTTGGGCCCTTSCSSGGG
T ss_pred             cccCCcCC-hhH--------cCCCCEEEEeCCCCCCCCcCCHHHHHHHHHHHHHCCcEEEEEcchHhhhcCCCCCCCHhh
Confidence            65433322 111        135789999999999998866   888889999999999999999975432100 00 01


Q ss_pred             hcCCCCccEEEECCccccCC-CCceEEEEEeccchhhhhccCCcccccccCcccccccCCCCCcccCCCCchhHHHHHHH
Q psy14299        149 LKGINRANSVSWNPHKMLGA-PLQCSILLIKEKGLLHQANATAATYLFQQDKFYDVSFDTGDKSVQCGRKVDAFKLWLMW  227 (448)
Q Consensus       149 ~~~~~~aD~~~~s~hK~l~~-P~g~G~l~vr~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  227 (448)
                      +.+....++++.+++|+++. ...+|+++++++ .....   ...+.                           ..+...
T Consensus       267 ~~~~~~~~i~~~s~sK~~g~~G~r~G~~~~~~~-~~~~~---~~~~~---------------------------~~~~~~  315 (449)
T 3qgu_A          267 IPGADEVAIETCSFSKYAGFTGVRLGWTVVPKA-LKYAN---GEPVH---------------------------ADWNRV  315 (449)
T ss_dssp             STTGGGTEEEEEECSGGGTCTTCCCEEEECCTT-CBCTT---SCBHH---------------------------HHHHHH
T ss_pred             ccCCCCcEEEEecchhhcCCccceeEEEecCHH-HHhhh---hhhHH---------------------------HHHHHH
Confidence            11112357889999999973 356788777543 22110   00000                           000000


Q ss_pred             HHhChHHHHHHHHHhhhhccCCCccchhhhhhhhhhhhhhhhhhhhhhhccccccccccCCCCCccccccchhhHHHHHH
Q psy14299        228 KARGNLGFRHFVDNAVDCSRGSMTFSTLLCFDLQGLLHQANATAATYLFQQDKFYDVSFDTGDKSVQCGRKVDAFKLWLM  307 (448)
Q Consensus       228 ~~~g~~g~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  307 (448)
                      ...                                                             .+.+.+.+.+.++..+
T Consensus       316 ~~~-------------------------------------------------------------~~~~~~~~~~~a~~~~  334 (449)
T 3qgu_A          316 MTT-------------------------------------------------------------CFNGASNIVQAGGLAC  334 (449)
T ss_dssp             HHH-------------------------------------------------------------SCCCCCHHHHHHHHHH
T ss_pred             hhc-------------------------------------------------------------ccCCCCHHHHHHHHHH
Confidence            000                                                             0001111111222222


Q ss_pred             HHHhcCccHHHHHHHHHHHHHHHHHHhhcCCCeEEeccCCceeeEEEEeeccCCCccccchhhhhhhhhhhHHHHHHHHh
Q psy14299        308 WKARGNLGFRHFVDNAVDCSRYFLSQISQRPGFRLVIPEFQCTNICFWFIPVSLRDKVEDETWWSTLSKVAPRIKEKLVL  387 (448)
Q Consensus       308 ~~~~~~~G~~~~~~~~~~l~~~~~~~L~~~pg~~l~~~~~~~~~v~f~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~L~~  387 (448)
                      ++..+.+.++++.++..++++++.+.|+++ |+++. .+.....+.+.+ + +.+               ..++.+.|++
T Consensus       335 l~~~~~~~~~~~~~~~~~~~~~l~~~L~~~-g~~~~-~~~~~~~~~~~~-~-~~~---------------~~~~~~~l~~  395 (449)
T 3qgu_A          335 LQPEGLKEMNAMIKFYKENAQILKTTFTEM-GFSVY-GGDDAPYIWVGF-P-GKP---------------SWDVFAEILE  395 (449)
T ss_dssp             TSHHHHHHHHHHHHHHHHHHHHHHHHHHHT-TCCEE-ESSSSSEEEEEC-T-TSC---------------HHHHHHHHHH
T ss_pred             HhhcCHHHHHHHHHHHHHHHHHHHHHHHHC-CCeee-CCCCeeEEEEEC-C-CCC---------------HHHHHHHHHH
Confidence            222222456777888899999999999998 88876 333333333332 2 222               2367788887


Q ss_pred             C-CcEEEEeeecCCcccccEEEEEecCCCCCCHHHHHHHHHHHHHHHHH
Q psy14299        388 G-GTLMIGYQPLQHRNLHNFFRLVTTCHPASSRQDMDYAIDQIELRGAE  435 (448)
Q Consensus       388 ~-g~~~~~~~~~~g~~~~~~lRis~~~~~~~t~edid~l~~al~~~~~~  435 (448)
                      + | +.+.++...+...++++|+++.    .+++|++++++.|+++.++
T Consensus       396 ~~g-I~v~pg~~f~~~~~~~iRis~~----~~~e~i~~~l~~l~~~~~~  439 (449)
T 3qgu_A          396 RCN-IVTTPGSGYGPAGEGFVRASAF----GSRENILEAVRRFKEAYGK  439 (449)
T ss_dssp             HHC-EECEEGGGGCGGGTTEEEEECC----SCHHHHHHHHHHHHHHHC-
T ss_pred             HCC-EEEecchHhCCCCCCeEEEEec----CCHHHHHHHHHHHHHHHHh
Confidence            6 7 5555554333333489999974    3999999999999988754

>3b46_A Aminotransferase BNA3; kynurenine aminotransferase, LLP, PLP, cytoplasm, mitochondrion, pyridoxal phosphate; HET: LLP; 2.00A {Saccharomyces cerevisiae}

Probab=99.78  E-value=1.9e-18  Score=177.85  Aligned_cols=156  Identities=13%  Similarity=0.079  Sum_probs=118.7

Q ss_pred             cEEEeCcHHHHHHHHHHHHHHhcCCcccccCCCCCCCeEEEecCCCchHHHHHHHHhCCCCCcEEEEecCC---------
Q psy14299          4 KPFLLPGGSISNMYSICLARYRLDPDTKRKGLSHLPPLCMFTSEDSHYSMLKAAHWLGIGMDNVIRVKTNE---------   74 (448)
Q Consensus         4 ~g~~t~ggT~an~~al~~a~~~~~~~~~~~G~~~~~~~~Vl~~~~~H~s~~~~~~~~g~~~~~v~~v~~~~---------   74 (448)
                      .+++|+|||+++..++.++..              +++.|+++...|.++...++..|.   +++.+|.++         
T Consensus       120 ~v~~t~G~~~al~~~~~~l~~--------------~gd~Vlv~~p~y~~~~~~~~~~g~---~~~~v~~~~~~~~~~~~~  182 (447)
T 3b46_A          120 NVTVTTGANEGILSCLMGLLN--------------AGDEVIVFEPFFDQYIPNIELCGG---KVVYVPINPPKELDQRNT  182 (447)
T ss_dssp             GEEEESHHHHHHHHHHHHHCC--------------TTCEEEEEESCCTTHHHHHHHTTC---EEEEEEEECCGGGGTSCB
T ss_pred             hEEEeCCHHHHHHHHHHHHcC--------------CCCEEEEeCCCchhHHHHHHHcCC---EEEEEeCCCccccccccc
Confidence            589999999999988877643              567788888999999999999888   788888754         


Q ss_pred             ---CCCcCHHHHHHHHHHhhhcCCCcEEEEEeccCCccccc---cCHHHHHHHHHHcCCEEEEecccccccccccchhh-
Q psy14299         75 ---RGQMICSFLEQTIQTSLAEKKIPLFVNATAGTTVLGAF---DPLDEIATVCEKYDLWMHVDACWGGSLIFSEKYSF-  147 (448)
Q Consensus        75 ---~g~id~e~Le~~l~~~~~~~~~~~lVv~~~~~t~tG~~---~~l~~I~~ia~~~g~~l~VD~A~~~~~~~~~~~~~-  147 (448)
                         ++.+|+++|++++.+      ++++|++++++|++|.+   +++++|+++|++||+++++|++|+...+..+.... 
T Consensus       183 ~~~~~~~d~~~l~~~l~~------~~~~v~l~~p~nptG~~~~~~~l~~i~~l~~~~~~~li~De~~~~~~~~g~~~~~~  256 (447)
T 3b46_A          183 RGEEWTIDFEQFEKAITS------KTKAVIINTPHNPIGKVFTREELTTLGNICVKHNVVIISDEVYEHLYFTDSFTRIA  256 (447)
T ss_dssp             CSTTSEECHHHHHTTCCT------TEEEEEEESSCTTTCCCCCHHHHHHHHHHHHHTTCEEEEECTTTTCBCSSCCCCGG
T ss_pred             cccCcccCHHHHHHhhcc------CCeEEEEeCCCCCCCcccCHHHHHHHHHHHHHcCcEEEEeccchhcccCCCCcCHH
Confidence               357999999998853      57899999999999988   46999999999999999999999875431110000 


Q ss_pred             hh-cCCCCccEEEECCccccCCC-CceEEEEEeccch
Q psy14299        148 VL-KGINRANSVSWNPHKMLGAP-LQCSILLIKEKGL  182 (448)
Q Consensus       148 ~~-~~~~~aD~~~~s~hK~l~~P-~g~G~l~vr~~~~  182 (448)
                      .+ .+....|+++.+++|+++.| ..+|+++.+++++
T Consensus       257 ~~~~~~~~~~i~i~S~sK~~~~~G~riG~~~~~~~~l  293 (447)
T 3b46_A          257 TLSPEIGQLTLTVGSAGKSFAATGWRIGWVLSLNAEL  293 (447)
T ss_dssp             GSCHHHHTTEEEEEEHHHHTTCTTSCCEEEECSCHHH
T ss_pred             HcCCCCCCcEEEEecCchhcCCcchhhEEEEeCCHHH
Confidence            01 01113689999999998743 2378877734333

>3cog_A Cystathionine gamma-lyase; CTH, PLP, propargylglycine, SGC, inhibitor, structural genom stockholm, structural genomics consortium; HET: PLP; 2.00A {Homo sapiens} PDB: 2nmp_A* 3elp_B

Probab=99.77  E-value=3.5e-18  Score=173.94  Aligned_cols=144  Identities=11%  Similarity=0.068  Sum_probs=113.2

Q ss_pred             cEEEeCcHHHHHHHHHHHHHHhcCCcccccCCCCCCCeEEEecCCCchHHHHHH----HHhCCCCCcEEEEecCCCCCcC
Q psy14299          4 KPFLLPGGSISNMYSICLARYRLDPDTKRKGLSHLPPLCMFTSEDSHYSMLKAA----HWLGIGMDNVIRVKTNERGQMI   79 (448)
Q Consensus         4 ~g~~t~ggT~an~~al~~a~~~~~~~~~~~G~~~~~~~~Vl~~~~~H~s~~~~~----~~~g~~~~~v~~v~~~~~g~id   79 (448)
                      ..+++++|++++..++. ..              .+++.|+++...|.+....+    +..|+   +++.++.+     |
T Consensus        84 ~~i~~~sG~~ai~~~~~-l~--------------~~gd~Vl~~~~~y~~~~~~~~~~~~~~G~---~v~~v~~~-----d  140 (403)
T 3cog_A           84 YCLAFASGLAATVTITH-LL--------------KAGDQIICMDDVYGGTNRYFRQVASEFGL---KISFVDCS-----K  140 (403)
T ss_dssp             EEEEESCHHHHHHHHHT-TS--------------CTTCEEEEESSCCHHHHHHHHHTGGGGTC---EEEEECTT-----S
T ss_pred             cEEEECCHHHHHHHHHH-Hh--------------CCCCEEEEeCCCcchHHHHHHHHHHHcCC---EEEEECCC-----C
Confidence            35677788888877765 32              25677889999999866544    34566   78888875     8


Q ss_pred             HHHHHHHHHHhhhcCCCcEEEEEeccCCccccccCHHHHHHHHHHcC-CEEEEecccccccccccchhhhhcCCCCccEE
Q psy14299         80 CSFLEQTIQTSLAEKKIPLFVNATAGTTVLGAFDPLDEIATVCEKYD-LWMHVDACWGGSLIFSEKYSFVLKGINRANSV  158 (448)
Q Consensus        80 ~e~Le~~l~~~~~~~~~~~lVv~~~~~t~tG~~~~l~~I~~ia~~~g-~~l~VD~A~~~~~~~~~~~~~~~~~~~~aD~~  158 (448)
                      +++|++++++      ++++|++++++|++|.+.|+++|+++|++|| +++++|++|+.+....+.      .. .+|++
T Consensus       141 ~~~l~~~i~~------~t~~v~~~~p~nptG~~~~l~~i~~la~~~g~~~livD~~~~~~~~~~~~------~~-~~div  207 (403)
T 3cog_A          141 IKLLEAAITP------ETKLVWIETPTNPTQKVIDIEGCAHIVHKHGDIILVVDNTFMSPYFQRPL------AL-GADIS  207 (403)
T ss_dssp             HHHHHHHCCT------TEEEEEEESSCTTTCCCCCHHHHHHHHTSSSCCEEEEECTTTCTTTCCTT------TT-TCSEE
T ss_pred             HHHHHHhcCc------CCeEEEEECCCCCCCeeeCHHHHHHHHHHcCCCEEEEECCCcccccCCcc------cc-CCeEE
Confidence            9999998854      5889999999999999999999999999999 999999999987542111      11 47999


Q ss_pred             EECCccccCCCCc--eEEEEEeccchh
Q psy14299        159 SWNPHKMLGAPLQ--CSILLIKEKGLL  183 (448)
Q Consensus       159 ~~s~hK~l~~P~g--~G~l~vr~~~~~  183 (448)
                      +.|+||++++|.+  .|+++.+++.+.
T Consensus       208 ~~S~sK~~~g~~~~~~G~v~~~~~~l~  234 (403)
T 3cog_A          208 MYSATKYMNGHSDVVMGLVSVNCESLH  234 (403)
T ss_dssp             EEETTTTTTCSSCCCCEEEEECCHHHH
T ss_pred             EEcChhhccCCCCCeEEEEEECcHHHH
Confidence            9999999999987  488887655443

>1qgn_A Protein (cystathionine gamma-synthase); methionine biosynthesis, pyridoxal 5'-phosphate, gamma-famil; HET: PLP; 2.90A {Nicotiana tabacum} SCOP: c.67.1.3 PDB: 1i41_A* 1i48_A* 1i43_A*

Probab=99.77  E-value=2.2e-17  Score=170.08  Aligned_cols=141  Identities=12%  Similarity=0.092  Sum_probs=112.0

Q ss_pred             cEEEeCcHHHHHHHHHHHHHHhcCCcccccCCCCCCCeEEEecCCCchHHHHHH----HHhCCCCCcEEEEecCCCCCcC
Q psy14299          4 KPFLLPGGSISNMYSICLARYRLDPDTKRKGLSHLPPLCMFTSEDSHYSMLKAA----HWLGIGMDNVIRVKTNERGQMI   79 (448)
Q Consensus         4 ~g~~t~ggT~an~~al~~a~~~~~~~~~~~G~~~~~~~~Vl~~~~~H~s~~~~~----~~~g~~~~~v~~v~~~~~g~id   79 (448)
                      ..+++++|++++..++....+              +++.|+++...|.+....+    +..|+   +++.++.+     |
T Consensus       131 ~~v~~~sG~~Ai~~al~~l~~--------------~Gd~Vi~~~~~y~~~~~~~~~~~~~~G~---~v~~v~~~-----d  188 (445)
T 1qgn_A          131 STLLMASGMCASTVMLLALVP--------------AGGHIVTTTDCYRKTRIFIETILPKMGI---TATVIDPA-----D  188 (445)
T ss_dssp             EEEEESCHHHHHHHHHHHHSC--------------SSCEEEEETTSCHHHHHHHHHTGGGGTC---EEEEECSS-----C
T ss_pred             cEEEeCCHHHHHHHHHHHHhC--------------CCCEEEEcCCCchhHHHHHHHHHHHcCC---EEEEeCCC-----C
Confidence            457778888999888876533              5667888889999877753    34566   78888765     8


Q ss_pred             HHHHHHHHHHhhhcCCCc-EEEEEeccCCccccccCHHHHHHHHHHcCCEEEEecccccccccccchhhhhcCCCCccEE
Q psy14299         80 CSFLEQTIQTSLAEKKIP-LFVNATAGTTVLGAFDPLDEIATVCEKYDLWMHVDACWGGSLIFSEKYSFVLKGINRANSV  158 (448)
Q Consensus        80 ~e~Le~~l~~~~~~~~~~-~lVv~~~~~t~tG~~~~l~~I~~ia~~~g~~l~VD~A~~~~~~~~~~~~~~~~~~~~aD~~  158 (448)
                      +++|+++|++      ++ ++|++++++|++|.+.|+++|+++||+||+++++|++|+.+....+ .     .. .+|++
T Consensus       189 ~~~l~~ai~~------~tv~lV~le~p~NptG~v~dl~~I~~la~~~g~~livD~a~~~~~~~~~-~-----~~-g~Div  255 (445)
T 1qgn_A          189 VGALELALNQ------KKVNLFFTESPTNPFLRCVDIELVSKLCHEKGALVCIDGTFATPLNQKA-L-----AL-GADLV  255 (445)
T ss_dssp             HHHHHHHHHH------SCEEEEEEESSCTTTCCCCCHHHHHHHHHHTTCEEEEECTTTCTTTCCT-T-----TT-TCSEE
T ss_pred             HHHHHHHhcc------CCCCEEEEeCCCCCCCcccCHHHHHHHHHHcCCEEEEECCCcccccCCc-c-----cc-CCEEE
Confidence            9999999976      36 8999999999999999999999999999999999999987654211 1     11 47999


Q ss_pred             EECCccccCCCC--ceEEEEEec
Q psy14299        159 SWNPHKMLGAPL--QCSILLIKE  179 (448)
Q Consensus       159 ~~s~hK~l~~P~--g~G~l~vr~  179 (448)
                      +.|+||+++++.  ..|+++.++
T Consensus       256 ~~S~sK~~gg~gd~~~G~l~~~~  278 (445)
T 1qgn_A          256 LHSATKFLGGHNDVLAGCISGPL  278 (445)
T ss_dssp             EECTTTTTTCSSSCCCEEEEECH
T ss_pred             EECCcccccccccceEEEEEECH
Confidence            999999998553  288887755

>2pb2_A Acetylornithine/succinyldiaminopimelate aminotran; ARGD, pyridoxal 5'-phosphate, arginine metabolism, lysine biosynthesis, gabaculine; HET: PLP; 1.91A {Salmonella typhimurium} PDB: 2pb0_A*

Probab=99.77  E-value=6.1e-17  Score=165.38  Aligned_cols=286  Identities=12%  Similarity=0.083  Sum_probs=174.1

Q ss_pred             cEEEeCcHHHHHHHHHHHHHHhcCCcccccCCCCCCCeEEEecCCCchHHHHHHHHhCCC-------C--CcEEEEecCC
Q psy14299          4 KPFLLPGGSISNMYSICLARYRLDPDTKRKGLSHLPPLCMFTSEDSHYSMLKAAHWLGIG-------M--DNVIRVKTNE   74 (448)
Q Consensus         4 ~g~~t~ggT~an~~al~~a~~~~~~~~~~~G~~~~~~~~Vl~~~~~H~s~~~~~~~~g~~-------~--~~v~~v~~~~   74 (448)
                      .++||+|||+||..++.+++...    ...|.+ .++.+|+.+...|.+...++...|..       +  ..+..+|.+ 
T Consensus       116 ~v~~~~ggteA~~~al~~~~~~~----~~~~~~-g~~~vi~~~~~yh~~~~~~~~~~g~~~~~~~~~p~~~~~~~~~~~-  189 (420)
T 2pb2_A          116 RVLFMNSGTEANETAFKLARHYA----CVRHSP-FKTKIIAFHNAFHGRSLFTVSVGGQPKYSDGFGPKPADIIHVPFN-  189 (420)
T ss_dssp             EEEEESSHHHHHHHHHHHHHHHH----HHHTCT-TCCEEEEETTCCCCSSHHHHHHSSCHHHHTTSSSCCSCEEEECTT-
T ss_pred             eEEEeCCHHHHHHHHHHHHHHHh----hhccCC-CCCEEEEEeCCcCCcCHHHHHhcCCccccccCCCCCCCeEEecCC-
Confidence            47999999999999998877521    001111 12345555667777766666665541       0  125556543 


Q ss_pred             CCCcCHHHHHHHHHHhhhcCCCcEEEEEeccCCcccc----ccCHHHHHHHHHHcCCEEEEecccccccccccchhhhhc
Q psy14299         75 RGQMICSFLEQTIQTSLAEKKIPLFVNATAGTTVLGA----FDPLDEIATVCEKYDLWMHVDACWGGSLIFSEKYSFVLK  150 (448)
Q Consensus        75 ~g~id~e~Le~~l~~~~~~~~~~~lVv~~~~~t~tG~----~~~l~~I~~ia~~~g~~l~VD~A~~~~~~~~~~~~~~~~  150 (448)
                          |+++|++++++      ++++|+++.+.+++|.    ..++++|.++|++||+++++|++|.+.............
T Consensus       190 ----d~~~le~~i~~------~~~~vi~~p~~~~gG~~~~~~~~l~~l~~l~~~~gi~lI~Dev~~g~~~~g~~~~~~~~  259 (420)
T 2pb2_A          190 ----DLHAVKAVMDD------HTCAVVVEPIQGEGGVQAATPEFLKGLRDLCDEHQALLVFDEVQCGMGRTGDLFAYMHY  259 (420)
T ss_dssp             ----CHHHHHHHCCT------TEEEEEECSEETTTTSEECCHHHHHHHHHHHHHTTCEEEEECTTTTTTTTSSSSHHHHH
T ss_pred             ----CHHHHHHHhcc------CceEEEEeCCcCCCCeecCCHHHHHHHHHHHHHcCCEEEEEcCCcCcccCCcHHHHHhc
Confidence                89999999853      5788888888776775    478999999999999999999999632111111111112


Q ss_pred             CCCCccEEEECCccccCCCCceEEEEEeccchhhhhccCCcccccccCcccccccCCCCCcccCCCCchhHHHHHHHHHh
Q psy14299        151 GINRANSVSWNPHKMLGAPLQCSILLIKEKGLLHQANATAATYLFQQDKFYDVSFDTGDKSVQCGRKVDAFKLWLMWKAR  230 (448)
Q Consensus       151 ~~~~aD~~~~s~hK~l~~P~g~G~l~vr~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  230 (448)
                      ++ ..|++++  +|++++...+|+++++++ +......   . .  ..    .       ++                  
T Consensus       260 ~~-~~diit~--sK~l~~G~~iG~~~~~~~-l~~~l~~---~-~--~~----~-------t~------------------  300 (420)
T 2pb2_A          260 GV-TPDILTS--AKALGGGFPVSAMLTTQE-IASAFHV---G-S--HG----S-------TY------------------  300 (420)
T ss_dssp             TC-CCSEEEE--CGGGGTTSCCEEEEECHH-HHTTCC----------C----C-------EE------------------
T ss_pred             CC-CCCeEEe--cccccCCCceEEEEEhHH-HHHhhcC---C-C--cC----c-------cc------------------
Confidence            32 3687754  799986667899888654 3322111   0 0  00    0       00                  


Q ss_pred             ChHHHHHHHHHhhhhccCCCccchhhhhhhhhhhhhhhhhhhhhhhccccccccccCCCCCccccccchhhHHHHHHHHH
Q psy14299        231 GNLGFRHFVDNAVDCSRGSMTFSTLLCFDLQGLLHQANATAATYLFQQDKFYDVSFDTGDKSVQCGRKVDAFKLWLMWKA  310 (448)
Q Consensus       231 g~~g~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  310 (448)
                                                                                      +++.+.+..+..+++.
T Consensus       301 ----------------------------------------------------------------~~~~~~~aa~~a~L~~  316 (420)
T 2pb2_A          301 ----------------------------------------------------------------GGNPLACAVAGAAFDI  316 (420)
T ss_dssp             ----------------------------------------------------------------CCCHHHHHHHHHHHHH
T ss_pred             ----------------------------------------------------------------CcCHHHHHHHHHHHHH
Confidence                                                                            0001111222233444


Q ss_pred             hcCccHHHHHHHHHHHHHHHHHHhhcC----CCeEEeccCCceeeEEEEeeccCCCccccchhhhhhhhhhhHHHHHHHH
Q psy14299        311 RGNLGFRHFVDNAVDCSRYFLSQISQR----PGFRLVIPEFQCTNICFWFIPVSLRDKVEDETWWSTLSKVAPRIKEKLV  386 (448)
Q Consensus       311 ~~~~G~~~~~~~~~~l~~~~~~~L~~~----pg~~l~~~~~~~~~v~f~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~L~  386 (448)
                      +..   +++.++..++++++.+.|+++    |.+..+  ++...++.+.+... ..             ....++.+.|.
T Consensus       317 ~~~---~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~--~~~g~~~~v~~~~~-~~-------------~~~~~l~~~l~  377 (420)
T 2pb2_A          317 INT---PEVLQGIHTKRQQFVQHLQAIDEQFDIFSDI--RGMGLLIGAELKPK-YK-------------GRARDFLYAGA  377 (420)
T ss_dssp             HSS---HHHHHHHHHHHHHHHHHHHHHHHHHCCEEEE--EEETTEEEEEECGG-GT-------------TCHHHHHHHHH
T ss_pred             HHh---ccHHHHHHHHHHHHHHHHHHHHhcCCCeEEE--EecceEEEEEECCC-ch-------------HHHHHHHHHHH
Confidence            333   355667777888888888764    444332  23344555544211 00             01247888999


Q ss_pred             hCCcEEEEeeecCCcccccEEEEEecCCCCCCHHHHHHHHHHHHHHHHHh
Q psy14299        387 LGGTLMIGYQPLQHRNLHNFFRLVTTCHPASSRQDMDYAIDQIELRGAEV  436 (448)
Q Consensus       387 ~~g~~~~~~~~~~g~~~~~~lRis~~~~~~~t~edid~l~~al~~~~~~~  436 (448)
                      ++| +.+.+.   +.   +++|+++  +..++++|+++++++|+++.+++
T Consensus       378 ~~G-i~v~~~---~~---~~iRl~~--~~~~t~eei~~~~~~l~~~l~~~  418 (420)
T 2pb2_A          378 EAG-VMVLNA---GA---DVMRFAP--SLVVEEADIHEGMQRFAQAVGKV  418 (420)
T ss_dssp             HTT-EECEES---ST---TEEEECC--CTTCCHHHHHHHHHHHHHHHHHH
T ss_pred             HCC-CEEEeC---CC---CEEEEEC--CCCCCHHHHHHHHHHHHHHHHHH
Confidence            998 444443   22   6899999  67899999999999999987653

>3ihj_A Alanine aminotransferase 2; helix, structural genomics, structural genomics consortium, pyridoxal phosphate; HET: PLP; 2.30A {Homo sapiens}

Probab=99.77  E-value=1.7e-17  Score=173.43  Aligned_cols=160  Identities=9%  Similarity=0.041  Sum_probs=115.2

Q ss_pred             cEEEeCcHHHHHHHHHHHHHHhcCCcccccCCCCCCCeEEEecCCCchHHHHHHHHhCCCCCcEEEEecCCC--CCcCHH
Q psy14299          4 KPFLLPGGSISNMYSICLARYRLDPDTKRKGLSHLPPLCMFTSEDSHYSMLKAAHWLGIGMDNVIRVKTNER--GQMICS   81 (448)
Q Consensus         4 ~g~~t~ggT~an~~al~~a~~~~~~~~~~~G~~~~~~~~Vl~~~~~H~s~~~~~~~~g~~~~~v~~v~~~~~--g~id~e   81 (448)
                      ..++|+|+++++.+++.+....        |-  .+++.|+++...|.++...++..|.   +++.++++++  +.+|++
T Consensus       155 ~i~~t~G~~~ai~~~~~~l~~~--------gd--~~~d~Vlv~~p~y~~~~~~~~~~g~---~~v~~~~~~~~~~~~d~~  221 (498)
T 3ihj_A          155 NIYLTTGASDGISTILKILVSG--------GG--KSRTGVMIPIPQYPLYSAVISELDA---IQVNYYLDEENCWALNVN  221 (498)
T ss_dssp             GEEEESSHHHHHHHHHHHHCCC--------CG--GGSEEEEEEESCCTHHHHHHHHTTC---EEEEEECBGGGTTBCCHH
T ss_pred             cEEEcCCHHHHHHHHHHHHcCC--------CC--CCCCEEEEeCCCchhHHHHHHHcCC---EEEEeeccccccCCCCHH
Confidence            5789999999998888765442        00  0235899999999999999999998   7888888764  589999


Q ss_pred             HHHHHHHHhhhcCCCcEEEEEeccCCccccccC---HHHHHHHHHHcCCEEEEeccccccccccc----chhhhhcCC--
Q psy14299         82 FLEQTIQTSLAEKKIPLFVNATAGTTVLGAFDP---LDEIATVCEKYDLWMHVDACWGGSLIFSE----KYSFVLKGI--  152 (448)
Q Consensus        82 ~Le~~l~~~~~~~~~~~lVv~~~~~t~tG~~~~---l~~I~~ia~~~g~~l~VD~A~~~~~~~~~----~~~~~~~~~--  152 (448)
                      +|++++++... +.++++|++++++|+||.+.+   +++|+++|++||+++++|.+|+...+...    ........+  
T Consensus       222 ~le~~l~~~~~-~~~~k~i~l~np~NPTG~v~s~~~l~~i~~la~~~~~~li~De~y~~~~~~~~~~~~s~~~~~~~~~~  300 (498)
T 3ihj_A          222 ELRRAVQEAKD-HCDPKVLCIINPGNPTGQVQSRKCIEDVIHFAWEEKLFLLADEVYQDNVYSPDCRFHSFKKVLYEMGP  300 (498)
T ss_dssp             HHHHHHHHHTT-TSEEEEEEEESSCTTTCCCCCHHHHHHHHHHHHHHTCEEEEECTTTTCBCCTTCCCCCHHHHHHHTCH
T ss_pred             HHHHHHHhhhc-cCCCeEEEEECCCCCCCCcCCHHHHHHHHHHHHHcCcEEEEEcCccccccCCCCCcCCHHHHHHHhcc
Confidence            99999987422 125889999999999998855   77799999999999999999987654211    111111100  


Q ss_pred             ---CCcc-EEEECCccccCC-C-CceEEEEE
Q psy14299        153 ---NRAN-SVSWNPHKMLGA-P-LQCSILLI  177 (448)
Q Consensus       153 ---~~aD-~~~~s~hK~l~~-P-~g~G~l~v  177 (448)
                         .... ++..|++|.+.+ | ...|++.+
T Consensus       301 ~~~~~~~~i~~~S~SK~~~G~~G~R~G~~~~  331 (498)
T 3ihj_A          301 EYSSNVELASFHSTSKGYMGECGYRGGYMEV  331 (498)
T ss_dssp             HHHTTCCEEEEEESSSSTTCCSSSCCEEEEE
T ss_pred             cccCceeEEEEeccccccccCcccceEEEEE
Confidence               0122 455689999843 3 34566654

>1s0a_A Adenosylmethionine-8-amino-7-oxononanoate aminotransferase; fold type I, subclass II, homodimer; HET: LLP; 1.71A {Escherichia coli} SCOP: c.67.1.4 PDB: 1qj5_A* 1mlz_A* 1qj3_A* 1mly_A* 1s06_A* 1s08_A* 1s09_A* 1s07_A* 1mgv_A* 1dty_A*

Probab=99.77  E-value=1.2e-16  Score=163.19  Aligned_cols=292  Identities=11%  Similarity=0.019  Sum_probs=173.2

Q ss_pred             cEEEeCcHHHHHHHHHHHHHHhcCCcccccCCCCCCCeEEEec-CCCchHHHHHHHHhCCC----------CCcEEEEec
Q psy14299          4 KPFLLPGGSISNMYSICLARYRLDPDTKRKGLSHLPPLCMFTS-EDSHYSMLKAAHWLGIG----------MDNVIRVKT   72 (448)
Q Consensus         4 ~g~~t~ggT~an~~al~~a~~~~~~~~~~~G~~~~~~~~Vl~~-~~~H~s~~~~~~~~g~~----------~~~v~~v~~   72 (448)
                      .++||+|||++|..++..++...    +..|   .|++.|++. ...|.+...++...+..          ...+..++.
T Consensus       105 ~v~~~~ggtea~~~ai~~~~~~~----~~~g---~~~~~vi~~~~~yh~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  177 (429)
T 1s0a_A          105 CVFLADSGSVAVEVAMKMALQYW----QAKG---EARQRFLTFRNGYHGDTFGAMSVCDPDNSMHSLWKGYLPENLFAPA  177 (429)
T ss_dssp             EEEEESSHHHHHHHHHHHHHHHH----HHHT---CCCCEEEEETTCCCCSSHHHHTTSCTTTTTGGGGTTTSCCCEEECC
T ss_pred             EEEEeCCHHHHHHHHHHHHHHHh----cccC---CCCCeEEEECCCCCCCchhhhhhcCCchhhcccccCCCCCceEeCC
Confidence            57999999999999988765310    0011   134444444 46676655554433210          012455665


Q ss_pred             CC------CCCcCHHHHHHHHHHhhhcCCCcEEEEEecc-CCccccccC----HHHHHHHHHHcCCEEEEeccccccccc
Q psy14299         73 NE------RGQMICSFLEQTIQTSLAEKKIPLFVNATAG-TTVLGAFDP----LDEIATVCEKYDLWMHVDACWGGSLIF  141 (448)
Q Consensus        73 ~~------~g~id~e~Le~~l~~~~~~~~~~~lVv~~~~-~t~tG~~~~----l~~I~~ia~~~g~~l~VD~A~~~~~~~  141 (448)
                      +.      .+.+|+++|++++++.   ..++++|+++.. ++++|.+.|    +++|.++|++||+++|+|++|+.....
T Consensus       178 ~~~~~~~~~~~~d~~~l~~~l~~~---~~~~~~vi~~p~~~n~tG~~~~~~~~l~~i~~l~~~~~~~li~De~~~~~g~~  254 (429)
T 1s0a_A          178 PQSRMDGEWDERDMVGFARLMAAH---RHEIAAVIIEPIVQGAGGMRMYHPEWLKRIRKICDREGILLIADEIATGFGRT  254 (429)
T ss_dssp             CCSBC-CCCCGGGGHHHHHHHHHH---TTTEEEEEECSSEECTTTCEEBCTHHHHHHHHHHHHHTCEEEEECTTTTTTTT
T ss_pred             CcccccccchHHHHHHHHHHHHhC---CCCEEEEEEeecccCCCCcccCCHHHHHHHHHHHHHcCCEEEEeehhhCCccc
Confidence            42      2468999999999742   124667777766 788998777    999999999999999999999732111


Q ss_pred             ccchhhhhcCCCCccEEEECCccccCCC-CceEEEEEeccchhhhhccCC-cccccccCcccccccCCCCCcccCCCCch
Q psy14299        142 SEKYSFVLKGINRANSVSWNPHKMLGAP-LQCSILLIKEKGLLHQANATA-ATYLFQQDKFYDVSFDTGDKSVQCGRKVD  219 (448)
Q Consensus       142 ~~~~~~~~~~~~~aD~~~~s~hK~l~~P-~g~G~l~vr~~~~~~~~~~~~-~~y~~~~~~~~~~~~~~~~~~~~~~~~~~  219 (448)
                      .........++ ..|+++++  |+++++ .++|++++++ ++........ ..+...           ..+      .  
T Consensus       255 g~~~~~~~~~~-~~d~~t~s--K~l~~G~~~iG~~~~~~-~~~~~l~~~~~~~~~~~-----------~t~------~--  311 (429)
T 1s0a_A          255 GKLFACEHAEI-APDILCLG--KALTGGTMTLSATLTTR-EVAETISNGEAGCFMHG-----------PTF------M--  311 (429)
T ss_dssp             SSSSGGGGGTC-CCSEEEEC--GGGGTSSSCCEEEEECH-HHHHHHHTSTTSSCSCC-----------CTT------T--
T ss_pred             chHHHhhhcCC-CCCEEEec--ccccCCCccceEEEeCH-HHHHHhhcCCCcccccC-----------CCC------C--
Confidence            00001111122 35777665  988877 7899988865 4433322110 000000           000      0  


Q ss_pred             hHHHHHHHHHhChHHHHHHHHHhhhhccCCCccchhhhhhhhhhhhhhhhhhhhhhhccccccccccCCCCCccccccch
Q psy14299        220 AFKLWLMWKARGNLGFRHFVDNAVDCSRGSMTFSTLLCFDLQGLLHQANATAATYLFQQDKFYDVSFDTGDKSVQCGRKV  299 (448)
Q Consensus       220 ~~~~~~~~~~~g~~g~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  299 (448)
                                                                                                  ++.+
T Consensus       312 ----------------------------------------------------------------------------~n~~  315 (429)
T 1s0a_A          312 ----------------------------------------------------------------------------GNPL  315 (429)
T ss_dssp             ----------------------------------------------------------------------------TCHH
T ss_pred             ----------------------------------------------------------------------------CCHH
Confidence                                                                                        0111


Q ss_pred             hhHHHHHHHHHhcCccHHHHHHHHHHHHHHHHHHhhcC---CCeEEeccCCceeeEEEEeeccCCCccccchhhhhhhhh
Q psy14299        300 DAFKLWLMWKARGNLGFRHFVDNAVDCSRYFLSQISQR---PGFRLVIPEFQCTNICFWFIPVSLRDKVEDETWWSTLSK  376 (448)
Q Consensus       300 ~~~~~~~~~~~~~~~G~~~~~~~~~~l~~~~~~~L~~~---pg~~l~~~~~~~~~v~f~~~~~~~~~~~~~~~~~~~~~~  376 (448)
                      .+.+...+++.+..+   .+.++..++++++.+.|+++   |++..+  ++...++.+.+ +...+              
T Consensus       316 ~~~a~~aal~~~~~~---~~~~~~~~~~~~l~~~L~~l~~~~~~~~~--~~~g~~~~~~~-~~~~~--------------  375 (429)
T 1s0a_A          316 ACAAANASLAILESG---DWQQQVADIEVQLREQLAPARDAEMVADV--RVLGAIGVVET-THPVN--------------  375 (429)
T ss_dssp             HHHHHHHHHHHHHTC---HHHHHHHHHHHHHHHHHGGGGGCTTEEEE--EEETTEEEEEE-SSCBC--------------
T ss_pred             HHHHHHHHHHHHHhC---CHHHHHHHHHHHHHHHHHHHhcCCCEEEE--EEeeEEEEEEE-CCccc--------------
Confidence            122222334433332   34566777788888888775   666543  22333444433 21111              


Q ss_pred             hhHHHHHHHHhCCcEEEEeeecCCcccccEEEEEecCCCCCCHHHHHHHHHHHHHHHHH
Q psy14299        377 VAPRIKEKLVLGGTLMIGYQPLQHRNLHNFFRLVTTCHPASSRQDMDYAIDQIELRGAE  435 (448)
Q Consensus       377 ~~~~i~~~L~~~g~~~~~~~~~~g~~~~~~lRis~~~~~~~t~edid~l~~al~~~~~~  435 (448)
                       ..++.+.|.++| +.+.+.   +    +++|+++  +..+|++|+++++++|+++.++
T Consensus       376 -~~~l~~~l~~~G-i~v~~~---~----~~iRis~--~~~~t~e~i~~~~~~l~~~~~~  423 (429)
T 1s0a_A          376 -MAALQKFFVEQG-VWIRPF---G----KLIYLMP--PYIILPQQLQRLTAAVNRAVQD  423 (429)
T ss_dssp             -HHHHHHHHHHTT-EECCCB---T----TEEEECC--CTTCCHHHHHHHHHHHHHHTSS
T ss_pred             -HHHHHHHHHHCC-CEEecc---C----CEEEEEC--CCCCCHHHHHHHHHHHHHHHHh
Confidence             236788888888 554432   2    6899999  7889999999999999988654

>1sff_A 4-aminobutyrate aminotransferase; enzyme complexes; HET: IK2; 1.90A {Escherichia coli} SCOP: c.67.1.4 PDB: 1sf2_A* 1szk_A* 1szu_A* 1szs_A*

Probab=99.77  E-value=1.7e-16  Score=161.55  Aligned_cols=161  Identities=11%  Similarity=0.056  Sum_probs=106.1

Q ss_pred             cEEEeCcHHHHHHHHHHHHHHhcCCcccccCCCCCCCeEEEecCCCchHHHHHHHHhCCC----------CCcEEEEecC
Q psy14299          4 KPFLLPGGSISNMYSICLARYRLDPDTKRKGLSHLPPLCMFTSEDSHYSMLKAAHWLGIG----------MDNVIRVKTN   73 (448)
Q Consensus         4 ~g~~t~ggT~an~~al~~a~~~~~~~~~~~G~~~~~~~~Vl~~~~~H~s~~~~~~~~g~~----------~~~v~~v~~~   73 (448)
                      .++||+|||+++..++..++...           .++.+|+.+...|.+...++...|..          ...+..+|.+
T Consensus       104 ~v~~~~g~~~a~~~~~~~a~~~~-----------~~~~vi~~~p~y~~~~~~~~~~~g~~~~~~~~~~~~~~~v~~v~~~  172 (426)
T 1sff_A          104 KTLLVTTGSEAVENAVKIARAAT-----------KRSGTIAFSGAYHGRTHYTLALTGKVNPYSAGMGLMPGHVYRALYP  172 (426)
T ss_dssp             EEEEESSHHHHHHHHHHHHHHHH-----------TCCEEEEETTCCCCSSHHHHHHSSCCTTTTTTSCCCCSSEEEECCC
T ss_pred             EEEEeCchHHHHHHHHHHHHHhh-----------CCCeEEEECCCcCCCchHhhhhcCCccccccccCCCCCCcEEeCCC
Confidence            57999999999999987544321           14555666677777777777776642          0126667765


Q ss_pred             C-----CCCcCHHHHHHHHHHhhhcCCCcEEEEEeccCCccccccC----HHHHHHHHHHcCCEEEEecccccccccccc
Q psy14299         74 E-----RGQMICSFLEQTIQTSLAEKKIPLFVNATAGTTVLGAFDP----LDEIATVCEKYDLWMHVDACWGGSLIFSEK  144 (448)
Q Consensus        74 ~-----~g~id~e~Le~~l~~~~~~~~~~~lVv~~~~~t~tG~~~~----l~~I~~ia~~~g~~l~VD~A~~~~~~~~~~  144 (448)
                      .     ++.+|+++|++++++.. .+.++++|+++...+++|...+    +++|.++|++||+++++|++|+. ......
T Consensus       173 ~~~~~~~~~~d~~~l~~~l~~~~-~~~~~~~v~~~p~~~ntG~~~~~~~~l~~l~~l~~~~~~~li~De~~~~-~~~~g~  250 (426)
T 1sff_A          173 CPLHGISEDDAIASIHRIFKNDA-APEDIAAIVIEPVQGEGGFYASSPAFMQRLRALCDEHGIMLIADEVQSG-AGRTGT  250 (426)
T ss_dssp             BGGGTBCHHHHHHHHHHHHHHTC-CGGGEEEEEECSBCTTTTSCBCCHHHHHHHHHHHHHHTCEEEEECTTTT-TTTTSS
T ss_pred             ccccccchHHHHHHHHHHHHhcc-CCCceEEEEEecccCCCCcccCCHHHHHHHHHHHHHcCCEEEEechhhc-cCcccc
Confidence            3     23579999999997410 0124677777655455997877    99999999999999999999994 221111


Q ss_pred             -hhhhhcCCCCccEEEECCccccCCCCceEEEEEecc
Q psy14299        145 -YSFVLKGINRANSVSWNPHKMLGAPLQCSILLIKEK  180 (448)
Q Consensus       145 -~~~~~~~~~~aD~~~~s~hK~l~~P~g~G~l~vr~~  180 (448)
                       ......++ ..|++  +++|++++...+|+++++++
T Consensus       251 ~~~~~~~~~-~~di~--s~sK~~~~GlriG~~~~~~~  284 (426)
T 1sff_A          251 LFAMEQMGV-APDLT--TFAKSIAGGFPLAGVTGRAE  284 (426)
T ss_dssp             SSGGGGTTS-CCSEE--EECGGGGTSSCCEEEEEEHH
T ss_pred             hhhhhhcCC-CCCEE--EEcccccCCCceEEEEEcHH
Confidence             11111122 36766  45699885223698888663

>3fkd_A L-threonine-O-3-phosphate decarboxylase; structural genomic, , structural genomics, PSI-2, protein structure initiative; 2.50A {Porphyromonas gingivalis}

Probab=99.76  E-value=6.2e-17  Score=160.49  Aligned_cols=269  Identities=11%  Similarity=0.022  Sum_probs=175.5

Q ss_pred             cEEEeCcHHHHHHHHHHHHHHhcCCcccccCCCCCCCeEEEecCCCchHHHHHHHHhCCCCCcEEEEec-CCCCCcCHHH
Q psy14299          4 KPFLLPGGSISNMYSICLARYRLDPDTKRKGLSHLPPLCMFTSEDSHYSMLKAAHWLGIGMDNVIRVKT-NERGQMICSF   82 (448)
Q Consensus         4 ~g~~t~ggT~an~~al~~a~~~~~~~~~~~G~~~~~~~~Vl~~~~~H~s~~~~~~~~g~~~~~v~~v~~-~~~g~id~e~   82 (448)
                      ..++|+|||+++.+++.+..                ++.|+++...|.++...++..|.   +++.++. ++++.+++  
T Consensus        69 ~i~~t~g~~~al~~~~~~l~----------------gd~Vi~~~p~~~~~~~~~~~~g~---~~~~v~~~~~~~~~~~--  127 (350)
T 3fkd_A           69 AILVTNGPTAAFYQIAQAFR----------------GSRSLIAIPSFAEYEDACRMYEH---EVCFYPSNEDIGEADF--  127 (350)
T ss_dssp             GEEEESHHHHHHHHHHHHTT----------------TCEEEEEESCCHHHHHHHHHTTC---EEEEEETTSCGGGSCC--
T ss_pred             HEEEcCCHHHHHHHHHHHHC----------------CCEEEEeCCCcHHHHHHHHHcCC---eEEEEecCCccccCcc--
Confidence            57899999999888876543                24588889999999999999998   8999998 65455655  


Q ss_pred             HHHHHHHhhhcCCCcEEEEEeccCCccccccCHHHHHHHHHHcC-CEEEEecccccccccccchhhhhcCCCCccEEEEC
Q psy14299         83 LEQTIQTSLAEKKIPLFVNATAGTTVLGAFDPLDEIATVCEKYD-LWMHVDACWGGSLIFSEKYSFVLKGINRANSVSWN  161 (448)
Q Consensus        83 Le~~l~~~~~~~~~~~lVv~~~~~t~tG~~~~l~~I~~ia~~~g-~~l~VD~A~~~~~~~~~~~~~~~~~~~~aD~~~~s  161 (448)
                                  .++++|++++++|++|.+.|++++.++++.++ .++++|++|+............+. ....++++.|
T Consensus       128 ------------~~~~~v~i~~p~nptG~~~~~~~l~~l~~~~~~~~li~Dea~~~~~~~~~~~~~~~~-~~~~~i~~~S  194 (350)
T 3fkd_A          128 ------------SNMDFCWLCNPNNPDGRLLQRTEILRLLNDHPDTTFVLDQSYVSFTTEEVIRPADIK-GRKNLVMVYS  194 (350)
T ss_dssp             ------------TTCSEEEEESSCTTTCCCCCHHHHHHHHHHCTTSEEEEECTTTTSCSSCCCCGGGGT-TCSSEEEEEE
T ss_pred             ------------CCCCEEEEeCCCCCcCCCCCHHHHHHHHHhCCCCEEEEECchhhhccCcchhhHHhh-cCCCEEEEec
Confidence                        14778999999999999999999999999886 799999999764432111111111 1134588889


Q ss_pred             CccccCCC-CceEEEEEeccchhhhhccCCcccccccCcccccccCCCCCcccCCCCchhHHHHHHHHHhChHHHHHHHH
Q psy14299        162 PHKMLGAP-LQCSILLIKEKGLLHQANATAATYLFQQDKFYDVSFDTGDKSVQCGRKVDAFKLWLMWKARGNLGFRHFVD  240 (448)
Q Consensus       162 ~hK~l~~P-~g~G~l~vr~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~g~~~~i~  240 (448)
                      ++|+++.| ..+|+++. ++++..........+                       ....+..+                
T Consensus       195 ~sK~~~~~G~r~G~~~~-~~~~~~~~~~~~~~~-----------------------~~~~~~~~----------------  234 (350)
T 3fkd_A          195 FSHAYGIPGLRIGYIVA-NKDFMKRVAAFSTPW-----------------------AVNALAIE----------------  234 (350)
T ss_dssp             SHHHHSCGGGCCEEEEC-CHHHHHHHHTTCCTT-----------------------CSCHHHHH----------------
T ss_pred             CchhccCcchheEeEEe-CHHHHHHHHHhCCCC-----------------------CCCHHHHH----------------
Confidence            99999844 46787777 444443332111100                       00001001                


Q ss_pred             HhhhhccCCCccchhhhhhhhhhhhhhhhhhhhhhhccccccccccCCCCCccccccchhhHHHHHHHHHhcCccHHHHH
Q psy14299        241 NAVDCSRGSMTFSTLLCFDLQGLLHQANATAATYLFQQDKFYDVSFDTGDKSVQCGRKVDAFKLWLMWKARGNLGFRHFV  320 (448)
Q Consensus       241 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~  320 (448)
                                                                                    .+..+++... ...+++.
T Consensus       235 --------------------------------------------------------------~~~~~l~~~~-~~~~~~~  251 (350)
T 3fkd_A          235 --------------------------------------------------------------AAKFILIHPA-QFTLPIR  251 (350)
T ss_dssp             --------------------------------------------------------------HHHHHHHCTT-TTCCCHH
T ss_pred             --------------------------------------------------------------HHHHHHhCHH-HHHHHHH
Confidence                                                                          0111111110 0112222


Q ss_pred             HHHHHHHHHHHHHhhcCCCeEEeccCCceeeEEEEeeccCCCccccchhhhhhhhhhhHHHHHHHHh-CCcEEEEeeecC
Q psy14299        321 DNAVDCSRYFLSQISQRPGFRLVIPEFQCTNICFWFIPVSLRDKVEDETWWSTLSKVAPRIKEKLVL-GGTLMIGYQPLQ  399 (448)
Q Consensus       321 ~~~~~l~~~~~~~L~~~pg~~l~~~~~~~~~v~f~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~L~~-~g~~~~~~~~~~  399 (448)
                      +.. ++++++.+.|+++|++++.  ++..+.+.+.+.. . +               ..++.+.|.+ +| +.+.++...
T Consensus       252 ~~~-~~~~~l~~~L~~~~~~~~~--~~~~~~~~~~~~~-~-~---------------~~~l~~~L~~~~g-i~v~~g~~f  310 (350)
T 3fkd_A          252 KWQ-RNTVDFITALNRLDGVEVH--PSGTTFFLLRLKK-G-T---------------AAELKKYMLEEYN-MLIRDASNF  310 (350)
T ss_dssp             HHH-HHHHHHHHHHHHSTTEEEC--CCSSSEEEEEESS-S-C---------------HHHHHHHHHHTTC-EECEECTTS
T ss_pred             HHH-HHHHHHHHHHhcCCCcEEC--CCCCcEEEEECCC-C-C---------------HHHHHHHHHHHCC-EEEEeCccC
Confidence            233 7788999999999999985  4444444444321 1 1               2378889998 78 555554333


Q ss_pred             CcccccEEEEEecCCCCCCHHHHHHHHHHHHHHHHH
Q psy14299        400 HRNLHNFFRLVTTCHPASSRQDMDYAIDQIELRGAE  435 (448)
Q Consensus       400 g~~~~~~lRis~~~~~~~t~edid~l~~al~~~~~~  435 (448)
                      +...++++|+++.     +++|+++++++|+++.++
T Consensus       311 ~~~~~~~iRis~~-----~~~~~~~l~~al~~~~~~  341 (350)
T 3fkd_A          311 RGLDESYVRITTQ-----RPAQNQLFIKALETFLEK  341 (350)
T ss_dssp             TTCCTTEEEEECC-----CHHHHHHHHHHHHHHHTC
T ss_pred             CCCCCCEEEEEcC-----CHHHHHHHHHHHHHHHHH
Confidence            2222479999983     789999999999988764

>3acz_A Methionine gamma-lyase; L-methionine; HET: LLP; 1.97A {Entamoeba histolytica} PDB: 3aej_A* 3ael_A* 3aem_A* 3aen_A* 3aeo_A* 3aep_A*

Probab=99.76  E-value=4.7e-17  Score=164.63  Aligned_cols=141  Identities=12%  Similarity=0.048  Sum_probs=115.0

Q ss_pred             cEEEeCcHHHHHHHHHHHHHHhcCCcccccCCCCCCCeEEEecCCCchHHHHH----HHHhCCCCCcEEEEecCCCCCcC
Q psy14299          4 KPFLLPGGSISNMYSICLARYRLDPDTKRKGLSHLPPLCMFTSEDSHYSMLKA----AHWLGIGMDNVIRVKTNERGQMI   79 (448)
Q Consensus         4 ~g~~t~ggT~an~~al~~a~~~~~~~~~~~G~~~~~~~~Vl~~~~~H~s~~~~----~~~~g~~~~~v~~v~~~~~g~id   79 (448)
                      ..+++++||+++..++.++..              +++.|+++...|.+....    ++..|+   +++.++.+     |
T Consensus        76 ~~i~~~sG~~ai~~~~~~~~~--------------~gd~vl~~~~~y~~~~~~~~~~~~~~g~---~~~~v~~~-----d  133 (389)
T 3acz_A           76 GSAAFGSGMGAISSSTLAFLQ--------------KGDHLIAGDTLYGCTVSLFTHWLPRFGI---EVDLIDTS-----D  133 (389)
T ss_dssp             EEEEESSHHHHHHHHHTTTCC--------------TTCEEEEESSCCHHHHHHHHHHHHHTTC---EEEEECTT-----C
T ss_pred             eEEEeCCHHHHHHHHHHHHhC--------------CCCEEEEeCCCchHHHHHHHHHHHHcCC---EEEEECCC-----C
Confidence            468889999998888765422              566788899999987766    466777   78888863     8


Q ss_pred             HHHHHHHHHHhhhcCCCcEEEEEeccCCccccccCHHHHHHHHHHcCCEEEEecccccccccccchhhhhcCCCCccEEE
Q psy14299         80 CSFLEQTIQTSLAEKKIPLFVNATAGTTVLGAFDPLDEIATVCEKYDLWMHVDACWGGSLIFSEKYSFVLKGINRANSVS  159 (448)
Q Consensus        80 ~e~Le~~l~~~~~~~~~~~lVv~~~~~t~tG~~~~l~~I~~ia~~~g~~l~VD~A~~~~~~~~~~~~~~~~~~~~aD~~~  159 (448)
                      ++++++++++      ++++|++++++|++|.+.|+++|.++|++||+++++|++|+.+....+ .    . . .+|+++
T Consensus       134 ~~~l~~~i~~------~~~~v~~~~~~nptG~~~~l~~i~~~~~~~~~~livD~~~~~~~~~~~-~----~-~-~~di~~  200 (389)
T 3acz_A          134 VEKVKAAWKP------NTKMVYLESPANPTCKVSDIKGIAVVCHERGARLVVDATFTSPCFLKP-L----E-L-GADIAL  200 (389)
T ss_dssp             HHHHHHTCCT------TEEEEEEESSCTTTCCCCCHHHHHHHHHHHTCEEEEECTTTCTTTCCG-G----G-T-TCSEEE
T ss_pred             HHHHHHhcCC------CCeEEEEECCCCCCCeecCHHHHHHHHHHcCCEEEEECCCccccccCc-c----c-c-CCeEEE
Confidence            9999998854      478999999999999999999999999999999999999987754211 1    1 1 479999


Q ss_pred             ECCccccCCCCc--eEEEEEec
Q psy14299        160 WNPHKMLGAPLQ--CSILLIKE  179 (448)
Q Consensus       160 ~s~hK~l~~P~g--~G~l~vr~  179 (448)
                      .|+||++++|.+  .|+++.++
T Consensus       201 ~S~sK~~~~~~~~~~G~v~~~~  222 (389)
T 3acz_A          201 HSVSKYINGHGDVIGGVSSAKT  222 (389)
T ss_dssp             EETTTTTTCSSCCCCEEEEESS
T ss_pred             ECChhhccCCCCceeEEEEECc
Confidence            999999999988  68888765

>3ri6_A O-acetylhomoserine sulfhydrylase; PYR 5'-phosphate, gamma-elimination, direct sulfhydrylation, CY metabolism, protein thiocarboxylate, TR; 2.20A {Wolinella succinogenes}

Probab=99.76  E-value=8e-17  Score=165.28  Aligned_cols=138  Identities=12%  Similarity=0.038  Sum_probs=112.2

Q ss_pred             EEEeCcHHHHHHHHHHHHHHhcCCcccccCCCCCCCeEEEecCCCchHHHH----HHHHhCCCCCcEEEEecCCCCCcCH
Q psy14299          5 PFLLPGGSISNMYSICLARYRLDPDTKRKGLSHLPPLCMFTSEDSHYSMLK----AAHWLGIGMDNVIRVKTNERGQMIC   80 (448)
Q Consensus         5 g~~t~ggT~an~~al~~a~~~~~~~~~~~G~~~~~~~~Vl~~~~~H~s~~~----~~~~~g~~~~~v~~v~~~~~g~id~   80 (448)
                      ++++++|++|+..++.+..+              +++.|+++...|.+...    .+...|+   +++.++.+     |+
T Consensus       100 ~v~~~sG~~Ai~~al~al~~--------------~Gd~Vi~~~~~y~~~~~~~~~~~~~~G~---~~~~v~~~-----d~  157 (430)
T 3ri6_A          100 VLALGSGMAAISTAILTLAR--------------AGDSVVTTDRLFGHTLSLFQKTLPSFGI---EVRFVDVM-----DS  157 (430)
T ss_dssp             EEEESCHHHHHHHHHHHHCC--------------TTCEEEEETTCCHHHHHHHHTHHHHTTC---EEEEECTT-----CH
T ss_pred             EEEECCHHHHHHHHHHHHhC--------------CCCEEEEcCCCchhHHHHHHHHHHHcCC---EEEEeCCC-----CH
Confidence            68889999999888876633              67789999999998877    5567777   78888876     89


Q ss_pred             HHHHHHHHHhhhcCCCcEEEEEeccCCccccccCHHHHHHHHHHcCCEEEEecccccccccccchhhhhcCCCCccEEEE
Q psy14299         81 SFLEQTIQTSLAEKKIPLFVNATAGTTVLGAFDPLDEIATVCEKYDLWMHVDACWGGSLIFSEKYSFVLKGINRANSVSW  160 (448)
Q Consensus        81 e~Le~~l~~~~~~~~~~~lVv~~~~~t~tG~~~~l~~I~~ia~~~g~~l~VD~A~~~~~~~~~~~~~~~~~~~~aD~~~~  160 (448)
                      ++|++++++      ++++|+++.++|++|.+.|+++|+++|+++|+++++|++++.+....+.    -.   ++|+++.
T Consensus       158 ~~l~~ai~~------~t~~v~~e~p~NptG~~~dl~~i~~la~~~g~~livD~a~~~~~~~~~~----~~---g~div~~  224 (430)
T 3ri6_A          158 LAVEHACDE------TTKLLFLETISNPQLQVADLEALSKVVHAKGIPLVVDTTMTPPYLLEAK----RL---GVDIEVL  224 (430)
T ss_dssp             HHHHHHCCT------TEEEEEEESSCTTTCCCCCHHHHHHHHHTTTCCEEEECTTSCTTTCCGG----GG---TCSEEEE
T ss_pred             HHHHHhhCC------CCeEEEEECCCCCCCeecCHHHHHHHHHHcCCEEEEECCCcccccCChH----Hc---CCEEEEE
Confidence            999999864      5889999999999999999999999999999999999999977652211    11   4799999


Q ss_pred             CCccccCCCC--ceEEEEE
Q psy14299        161 NPHKMLGAPL--QCSILLI  177 (448)
Q Consensus       161 s~hK~l~~P~--g~G~l~v  177 (448)
                      |++|++++|.  -.|+++.
T Consensus       225 S~sK~l~g~g~~~gG~vv~  243 (430)
T 3ri6_A          225 SSTKFISGGGTSVGGVLID  243 (430)
T ss_dssp             ECCCEEETTEEECCEEEEE
T ss_pred             CCcccccCCCCceEEEEEE
Confidence            9999999873  3444443

>2fq6_A Cystathionine beta-lyase; protein-inhibitor complex, PLP cofactor covalently bound to inhibitor; HET: P3F; 1.78A {Escherichia coli} SCOP: c.67.1.3 PDB: 2gqn_A* 1cl1_A* 1cl2_A*

Probab=99.76  E-value=1.2e-17  Score=170.59  Aligned_cols=142  Identities=12%  Similarity=0.094  Sum_probs=112.5

Q ss_pred             cEEEeCcHHHHHHHHHHHHHHhcCCcccccCCCCCCCeEEEecCCCchHHHHHHH----HhCCCCCcEEEEecCCCCCcC
Q psy14299          4 KPFLLPGGSISNMYSICLARYRLDPDTKRKGLSHLPPLCMFTSEDSHYSMLKAAH----WLGIGMDNVIRVKTNERGQMI   79 (448)
Q Consensus         4 ~g~~t~ggT~an~~al~~a~~~~~~~~~~~G~~~~~~~~Vl~~~~~H~s~~~~~~----~~g~~~~~v~~v~~~~~g~id   79 (448)
                      ..++++|||+||..++.+..+              +++.|+++...|.+....+.    ..|+   ++..++.+     |
T Consensus        99 ~~i~~ssGt~Ai~~al~~l~~--------------~Gd~Vi~~~~~y~~~~~~~~~~l~~~G~---~v~~v~~~-----d  156 (415)
T 2fq6_A           99 GCVLFPCGAAAVANSILAFIE--------------QGDHVLMTNTAYEPSQDFCSKILSKLGV---TTSWFDPL-----I  156 (415)
T ss_dssp             EEEEESSHHHHHHHHHHTTCC--------------TTCEEEEETTSCHHHHHHHHHTGGGGTC---EEEEECTT-----C
T ss_pred             eEEEeCCHHHHHHHHHHHHhC--------------CCCEEEEeCCCchHHHHHHHHHHHHcCc---EEEEECCC-----C
Confidence            367889999999888765422              56788899999998887663    3455   67777764     8


Q ss_pred             HHHHHHHHHHhhhcCCCcEEEEEeccCCccccccCHHHHHHHHHH--cCCEEEEecccccccccccchhhhhcCCCCccE
Q psy14299         80 CSFLEQTIQTSLAEKKIPLFVNATAGTTVLGAFDPLDEIATVCEK--YDLWMHVDACWGGSLIFSEKYSFVLKGINRANS  157 (448)
Q Consensus        80 ~e~Le~~l~~~~~~~~~~~lVv~~~~~t~tG~~~~l~~I~~ia~~--~g~~l~VD~A~~~~~~~~~~~~~~~~~~~~aD~  157 (448)
                      +++|+++|++      ++++|++.+++|++|.+.|+++|+++|++  ||+++|+|++|+.+....+.      .. ++|+
T Consensus       157 ~~~le~ai~~------~tklV~~e~~~NptG~v~dl~~I~~la~~~~~g~~livD~a~a~~~~~~p~------~~-g~Di  223 (415)
T 2fq6_A          157 GADIVKHLQP------NTKIVFLESPGSITMEVHDVPAIVAAVRSVVPDAIIMIDNTWAAGVLFKAL------DF-GIDV  223 (415)
T ss_dssp             GGGGGGGCCT------TEEEEEEESSCTTTCCCCCHHHHHHHHHHHCTTCEEEEECTTTTTTSSCGG------GG-TCSE
T ss_pred             HHHHHHhhcc------CCcEEEEECCCCCCCEeecHHHHHHHHHhhcCCCEEEEECCCcccccCCcc------cc-CCeE
Confidence            8999998854      48899999999999999999999999999  99999999999866432111      11 4799


Q ss_pred             EEECCccccCCCCc--eEEEEEecc
Q psy14299        158 VSWNPHKMLGAPLQ--CSILLIKEK  180 (448)
Q Consensus       158 ~~~s~hK~l~~P~g--~G~l~vr~~  180 (448)
                      ++.|+||++++|.+  .|+++.+++
T Consensus       224 v~~S~sK~lg~~g~~~~G~l~~~~~  248 (415)
T 2fq6_A          224 SIQAATKYLVGHSDAMIGTAVCNAR  248 (415)
T ss_dssp             EEEETTTTTTCSSSCCCEEEEECTT
T ss_pred             EEEeCccccCCCCCceEEEEEeCHH
Confidence            99999999998765  677777553

>3rq1_A Aminotransferase class I and II; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, alpha-beta structure, cytosol; HET: AKG GOL; 2.20A {Veillonella parvula}

Probab=99.76  E-value=8.9e-17  Score=163.40  Aligned_cols=154  Identities=8%  Similarity=-0.021  Sum_probs=111.9

Q ss_pred             cEEEeCcHHHHHHHHHHHHHHhcCCcccccCCCCCCCeEEEecCCCchHHHHHHHHhCCCCCcEEEEecC-CCCCcCHHH
Q psy14299          4 KPFLLPGGSISNMYSICLARYRLDPDTKRKGLSHLPPLCMFTSEDSHYSMLKAAHWLGIGMDNVIRVKTN-ERGQMICSF   82 (448)
Q Consensus         4 ~g~~t~ggT~an~~al~~a~~~~~~~~~~~G~~~~~~~~Vl~~~~~H~s~~~~~~~~g~~~~~v~~v~~~-~~g~id~e~   82 (448)
                      .+++|+|||+++..++.+...              +++.|+++...|.++...++..|.   +++.+|.+ +++.+|+++
T Consensus       104 ~i~~t~g~~~al~~~~~~l~~--------------~gd~Vl~~~p~~~~~~~~~~~~g~---~~~~v~~~~~~~~~d~~~  166 (418)
T 3rq1_A          104 RSIATAGGTGGIHHLIHNYTE--------------PGDEVLTADWYWGAYRVICSDTGR---TLVTYSLFDEHNNFNHEA  166 (418)
T ss_dssp             EEEEESHHHHHHHHHHHHHSC--------------TTCEEEEESSCCTHHHHHHHHTTC---EEEEECSBCTTSSBCHHH
T ss_pred             cEEECCchHHHHHHHHHHhcC--------------CCCEEEECCCCchhHHHHHHHcCC---EEEEEeeeCCCCCcCHHH
Confidence            689999999999988876543              667899999999999999999998   78899984 467999999


Q ss_pred             HHHHHHHhhhcCCCcE-EEEEecc-CCccccccCHHHHH---HHHH------HcCCEEEEecccccccccccchh---hh
Q psy14299         83 LEQTIQTSLAEKKIPL-FVNATAG-TTVLGAFDPLDEIA---TVCE------KYDLWMHVDACWGGSLIFSEKYS---FV  148 (448)
Q Consensus        83 Le~~l~~~~~~~~~~~-lVv~~~~-~t~tG~~~~l~~I~---~ia~------~~g~~l~VD~A~~~~~~~~~~~~---~~  148 (448)
                      |++++++....  +++ +++++.+ +|+||.+.|.+++.   ++|+      +||+++++|++|...........   ..
T Consensus       167 l~~~l~~~~~~--~~~~~vi~~~p~~NPtG~~~~~~~l~~l~~~~~~~~~~~~~~~~li~De~y~~~~~~~~~~~~~~~~  244 (418)
T 3rq1_A          167 FQNRVNELAAK--QTNVVVIFNTPGNNPTGYSIEDKDWDSILNFLKDLVAIGRNNVIIGIDVAYLDYSGEKDEVRAFFNK  244 (418)
T ss_dssp             HHHHHHHHHHH--CSEEEEEEECSSCTTTCCCCCHHHHHHHHHHHHHHHHTSSCEEEEEEECTTGGGSSCHHHHHGGGGG
T ss_pred             HHHHHHHhhcc--CCCEEEEEeCCCCCCCCCCCCHHHHHHHHHHHHHhhhccCCCeEEEEecccccccCChHHHHHHHHH
Confidence            99999753211  244 7888888 89999998866555   5555      89999999999865443111101   11


Q ss_pred             hcCCCCcc---EEEECCccccCCC-CceEEEEE
Q psy14299        149 LKGINRAN---SVSWNPHKMLGAP-LQCSILLI  177 (448)
Q Consensus       149 ~~~~~~aD---~~~~s~hK~l~~P-~g~G~l~v  177 (448)
                      ..++. -|   +++.|++|.++.| ..+|+++.
T Consensus       245 ~~~~~-~~~~~i~~~S~sK~~~~~G~r~G~~~~  276 (418)
T 3rq1_A          245 FSHLP-KEILTCVCYSLSKGFTMYGQRVGAMIG  276 (418)
T ss_dssp             GTTCC-TTEEEEEEEESTTTTTCCSSCCEEEEE
T ss_pred             HHhcC-CCceEEEEEeCCCCCcCcCCcceEEEE
Confidence            11111 23   6667999998755 34677665

>4adb_A Succinylornithine transaminase; transferase, PLP enzymes, aminotransferase; HET: PLP; 2.20A {Escherichia coli} PDB: 4adc_A* 4add_A* 4ade_A

Probab=99.76  E-value=2.1e-16  Score=159.62  Aligned_cols=288  Identities=13%  Similarity=0.086  Sum_probs=170.6

Q ss_pred             cEEEeCcHHHHHHHHHHHHHHhcCCcccccCCCCCCCeEEEecCCCchHHHHHHHHhCCCC---------CcEEEEecCC
Q psy14299          4 KPFLLPGGSISNMYSICLARYRLDPDTKRKGLSHLPPLCMFTSEDSHYSMLKAAHWLGIGM---------DNVIRVKTNE   74 (448)
Q Consensus         4 ~g~~t~ggT~an~~al~~a~~~~~~~~~~~G~~~~~~~~Vl~~~~~H~s~~~~~~~~g~~~---------~~v~~v~~~~   74 (448)
                      .++||+|||++|..++.+++...    ...|.+ .++.+|+.+...|.+...+....+...         ..+..+|.+ 
T Consensus        98 ~v~~~~gg~~a~~~al~~~~~~~----~~~~~~-g~~~vi~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-  171 (406)
T 4adb_A           98 RVFFCNSGAEANEAALKLARKFA----HDRYGS-HKSGIVAFKNAFHGRTLFTVSAGGQPAYSQDFAPLPADIRHAAYN-  171 (406)
T ss_dssp             EEEEESSHHHHHHHHHHHHHHHH----HHHTCT-TCCEEEEETTCCCCSSHHHHHHSSCGGGTGGGCSCCSSEEEECTT-
T ss_pred             eEEEeCcHHHHHHHHHHHHHHHH----HhcCCC-CCcEEEEECCCcCCCcHHHhhccCCccccccCCCCCCCceEeCCC-
Confidence            57999999999999988776520    000111 134566666777777666666554211         135555543 


Q ss_pred             CCCcCHHHHHHHHHHhhhcCCCcEEEEEeccCCccccc-----cCHHHHHHHHHHcCCEEEEecccccccccccchhhhh
Q psy14299         75 RGQMICSFLEQTIQTSLAEKKIPLFVNATAGTTVLGAF-----DPLDEIATVCEKYDLWMHVDACWGGSLIFSEKYSFVL  149 (448)
Q Consensus        75 ~g~id~e~Le~~l~~~~~~~~~~~lVv~~~~~t~tG~~-----~~l~~I~~ia~~~g~~l~VD~A~~~~~~~~~~~~~~~  149 (448)
                          |+++|++++++      ++++|+++ +.+++|.+     .++++|.++|++||+++|+|++|+.............
T Consensus       172 ----d~~~l~~~l~~------~~~~v~~~-p~np~g~~~~~~~~~l~~l~~l~~~~~~~li~De~~~~~~~~g~~~~~~~  240 (406)
T 4adb_A          172 ----DINSASALIDD------STCAVIVE-PIQGEGGVVPASNAFLQGLRELCNRHNALLIFDEVQTGVGRTGELYAYMH  240 (406)
T ss_dssp             ----CHHHHHTTCST------TEEEEEEC-SEETTTTSEECCHHHHHHHHHHHHHTTCEEEEECTTTTTTTTSSSSHHHH
T ss_pred             ----cHHHHHHHhcC------CeEEEEEe-CCcCCCCCccCCHHHHHHHHHHHHHcCCEEEEeccccCCCccchhHHHHh
Confidence                89999998853      57888888 77777743     5799999999999999999999973211111111111


Q ss_pred             cCCCCccEEEECCccccCCCCceEEEEEeccchhhhhccCCcccccccCcccccccCCCCCcccCCCCchhHHHHHHHHH
Q psy14299        150 KGINRANSVSWNPHKMLGAPLQCSILLIKEKGLLHQANATAATYLFQQDKFYDVSFDTGDKSVQCGRKVDAFKLWLMWKA  229 (448)
Q Consensus       150 ~~~~~aD~~~~s~hK~l~~P~g~G~l~vr~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  229 (448)
                      .++ ..|++++  +|++++...+|+++.++ ++...........               .+      ....         
T Consensus       241 ~~~-~~d~~t~--sK~~~~G~r~G~~~~~~-~~~~~~~~~~~~~---------------~~------~~~~---------  286 (406)
T 4adb_A          241 YGV-TPDLLTT--AKALGGGFPVGALLATE-ECARVMTVGTHGT---------------TY------GGNP---------  286 (406)
T ss_dssp             HTC-CCSEEEE--CGGGGTTSCCEEEEECH-HHHHTCCTTSSCC---------------SS------TTCH---------
T ss_pred             cCC-CCCEEEe--chhhcCCCCeEEEEEcH-HHHhhhccCCcCC---------------CC------CCCH---------
Confidence            222 2577765  99998444588877754 3333221100000               00      0001         


Q ss_pred             hChHHHHHHHHHhhhhccCCCccchhhhhhhhhhhhhhhhhhhhhhhccccccccccCCCCCccccccchhhHHHHHHHH
Q psy14299        230 RGNLGFRHFVDNAVDCSRGSMTFSTLLCFDLQGLLHQANATAATYLFQQDKFYDVSFDTGDKSVQCGRKVDAFKLWLMWK  309 (448)
Q Consensus       230 ~g~~g~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  309 (448)
                                                                                           +.+..+..+++
T Consensus       287 ---------------------------------------------------------------------~~~~a~~~~l~  297 (406)
T 4adb_A          287 ---------------------------------------------------------------------LASAVAGKVLE  297 (406)
T ss_dssp             ---------------------------------------------------------------------HHHHHHHHHHH
T ss_pred             ---------------------------------------------------------------------HHHHHHHHHHH
Confidence                                                                                 11111222333


Q ss_pred             HhcCccHHHHHHHHHHHHHHHHHHhhcCCC-eEEecc-CCceeeEEEEeeccCCCccccchhhhhhhhhhhHHHHHHHHh
Q psy14299        310 ARGNLGFRHFVDNAVDCSRYFLSQISQRPG-FRLVIP-EFQCTNICFWFIPVSLRDKVEDETWWSTLSKVAPRIKEKLVL  387 (448)
Q Consensus       310 ~~~~~G~~~~~~~~~~l~~~~~~~L~~~pg-~~l~~~-~~~~~~v~f~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~L~~  387 (448)
                      ....   +++.++..++++++.+.|+++.. +.++.. +.....+.+.+.. ...             ....++.+.|.+
T Consensus       298 ~~~~---~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~g~~~~~~~~~-~~~-------------~~~~~~~~~l~~  360 (406)
T 4adb_A          298 LINT---PEMLNGVKQRHDWFVERLNTINHRYGLFSEVRGLGLLIGCVLNA-DYA-------------GQAKQISQEAAK  360 (406)
T ss_dssp             HHSS---HHHHHHHHHHHHHHHHHHHHHHHHHCCEEEEEEETTEEEEEECT-TTT-------------TCHHHHHHHHHH
T ss_pred             HHHh---cCHHHHHHHHHHHHHHHHHHHHHhCCCceEEEEEEEEEEEEEeC-CcH-------------HHHHHHHHHHHH
Confidence            3322   45667777888888888876511 111101 1123344444321 110             012478899999


Q ss_pred             CCcEEEEeeecCCcccccEEEEEecCCCCCCHHHHHHHHHHHHHHHHHhH
Q psy14299        388 GGTLMIGYQPLQHRNLHNFFRLVTTCHPASSRQDMDYAIDQIELRGAEVD  437 (448)
Q Consensus       388 ~g~~~~~~~~~~g~~~~~~lRis~~~~~~~t~edid~l~~al~~~~~~~~  437 (448)
                      +| +.+.+.   +.   +++|+++  +..++++|+++++++|+++.+++.
T Consensus       361 ~g-i~v~~~---~~---~~iRi~~--~~~~~~e~i~~~~~~l~~~l~~~~  401 (406)
T 4adb_A          361 AG-VMVLIA---GG---NVVRFAP--ALNVSEEEVTTGLDRFAAACEHFV  401 (406)
T ss_dssp             TT-EECEES---ST---TEEEECC--CTTCCHHHHHHHHHHHHHHHHHHH
T ss_pred             CC-cEEeec---CC---CeEEEEC--CCCCCHHHHHHHHHHHHHHHHHHH
Confidence            98 444442   22   7999998  688999999999999999987764

>3if2_A Aminotransferase; YP_265399.1, structura genomics, joint center for structural genomics, JCSG, prote structure initiative, PSI-2; HET: PLP; 2.50A {Psychrobacter arcticus 273-4}

Probab=99.75  E-value=3.5e-17  Score=167.71  Aligned_cols=166  Identities=10%  Similarity=0.066  Sum_probs=105.3

Q ss_pred             cEEEeCcHHHHHHHHHHHHHHhcCCcccccCC-C-CCCC--eEEEec-CCCchHHHHHH----HHhCCCCCcEEEEecCC
Q psy14299          4 KPFLLPGGSISNMYSICLARYRLDPDTKRKGL-S-HLPP--LCMFTS-EDSHYSMLKAA----HWLGIGMDNVIRVKTNE   74 (448)
Q Consensus         4 ~g~~t~ggT~an~~al~~a~~~~~~~~~~~G~-~-~~~~--~~Vl~~-~~~H~s~~~~~----~~~g~~~~~v~~v~~~~   74 (448)
                      ..+||+|||+++.+++.++..+-    ...|. . ..++  ..|+++ ..+|..+...+    .+.+.+. .+..++.++
T Consensus       108 ~i~~t~G~t~al~~~~~~l~~~g----d~~~~~~~~~~g~~~~vi~~~~p~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~  182 (444)
T 3if2_A          108 NIALTNGSQNAFFYLFNLFGGAF----VNEHSQDKESKSVDKSILLPLTPEYIGYSDVHVEGQHFAAVLP-HIDEVTHDG  182 (444)
T ss_dssp             GEEEESSHHHHHHHHHHHSSEEE----ECC-------CEEEEEEEESSSSCCGGGTTCCSSSCCEEECCC-EEEEEEETT
T ss_pred             HEEEecCcHHHHHHHHHHHhCCC----ccccccccccccccceEEEeCCCCccchhhcccccchhhccCc-eEEeccccc
Confidence            57999999999999887764320    00000 0 0000  045554 56666655432    1122222 577788765


Q ss_pred             -C----CCcCHHHHHHHHHHhhhcCCCcEEEEEeccCCccccccC---HHHHHHHHHHcCCEEEEecccccccccccchh
Q psy14299         75 -R----GQMICSFLEQTIQTSLAEKKIPLFVNATAGTTVLGAFDP---LDEIATVCEKYDLWMHVDACWGGSLIFSEKYS  146 (448)
Q Consensus        75 -~----g~id~e~Le~~l~~~~~~~~~~~lVv~~~~~t~tG~~~~---l~~I~~ia~~~g~~l~VD~A~~~~~~~~~~~~  146 (448)
                       +    +.+|+++|++++++.   ..++++|++++++|++|.+.|   +++|.++|++||+++|+|++|+..........
T Consensus       183 ~~g~~~~~~d~~~l~~~l~~~---~~~~~~v~i~~p~nptG~~~~~~~l~~i~~~a~~~~~~li~De~~~~~~~~~~~~~  259 (444)
T 3if2_A          183 EEGFFKYRVDFEALENLPALK---EGRIGAICCSRPTNPTGNVLTDEEMAHLAEIAKRYDIPLIIDNAYGMPFPNIIYSD  259 (444)
T ss_dssp             EEEEEEEECCHHHHHTCHHHH---TTCEEEEEEESSCTTTCCCCCHHHHHHHHHHHHHTTCCEEEECTTCTTTTCCBCSC
T ss_pred             ccCccccCCCHHHHHHHHHhc---CCCceEEEeCCCCCCCCCcCCHHHHHHHHHHHHHCCCEEEEECCCCCccccccccc
Confidence             3    379999999986431   135889999999999999999   88999999999999999999985321111000


Q ss_pred             hhhcCCCCccEEEECCccccCCCCceEEEEEe
Q psy14299        147 FVLKGINRANSVSWNPHKMLGAPLQCSILLIK  178 (448)
Q Consensus       147 ~~~~~~~~aD~~~~s~hK~l~~P~g~G~l~vr  178 (448)
                       ........++++.++||++....++|+++.+
T Consensus       260 -~~~~~~~~~i~~~S~sK~~~~G~r~G~~~~~  290 (444)
T 3if2_A          260 -AHLNWDNNTILCFSLSKIGLPGMRTGIIVAD  290 (444)
T ss_dssp             -CCCCCCTTEEEEEESTTTTCGGGCCEEEECC
T ss_pred             -ccccCCCCEEEEechhhccCCCCceEEEEEC
Confidence             0001124578899999974433557766553

>1n8p_A Cystathionine gamma-lyase; three open alpha/beta structures; HET: PLP; 2.60A {Saccharomyces cerevisiae} SCOP: c.67.1.3

Probab=99.75  E-value=2.1e-17  Score=167.51  Aligned_cols=144  Identities=15%  Similarity=0.084  Sum_probs=109.0

Q ss_pred             cEEEeCcHHHHHHHHHHHHHHhcCCcccccCCCCCCCeEEEecCCCchHHHHHH----HHhCCCCCcEEEEecCCCCCcC
Q psy14299          4 KPFLLPGGSISNMYSICLARYRLDPDTKRKGLSHLPPLCMFTSEDSHYSMLKAA----HWLGIGMDNVIRVKTNERGQMI   79 (448)
Q Consensus         4 ~g~~t~ggT~an~~al~~a~~~~~~~~~~~G~~~~~~~~Vl~~~~~H~s~~~~~----~~~g~~~~~v~~v~~~~~g~id   79 (448)
                      ..+++++||+||..++. ..+              +++.|+++...|.+.....    +..|.   +++.++.+     |
T Consensus        72 ~~i~~~sGt~a~~~al~-~~~--------------~gd~Vi~~~~~y~~~~~~~~~~~~~~G~---~v~~v~~~-----d  128 (393)
T 1n8p_A           72 YGLAFSSGSATTATILQ-SLP--------------QGSHAVSIGDVYGGTHRYFTKVANAHGV---ETSFTNDL-----L  128 (393)
T ss_dssp             EEEEESCHHHHHHHHHH-TSC--------------SSCEEEEESSCCHHHHHHHHHTSTTTCS---CCEEESSH-----H
T ss_pred             cEEEECChHHHHHHHHH-HcC--------------CCCEEEEeCCCchHHHHHHHHHHHHcCc---EEEEeCCC-----h
Confidence            46778888999988876 322              5667888888998766544    33455   67888865     7


Q ss_pred             HHHHHHHHHHhhhcCCCcEEEEEeccCCccccccCHHHHHHHHHHc----CCEEEEecccccccccccchhhhhcCCCCc
Q psy14299         80 CSFLEQTIQTSLAEKKIPLFVNATAGTTVLGAFDPLDEIATVCEKY----DLWMHVDACWGGSLIFSEKYSFVLKGINRA  155 (448)
Q Consensus        80 ~e~Le~~l~~~~~~~~~~~lVv~~~~~t~tG~~~~l~~I~~ia~~~----g~~l~VD~A~~~~~~~~~~~~~~~~~~~~a  155 (448)
                       ++|++++++      ++++|++.+++|++|.+.|+++|.++|++|    |+++|+|++|+.+... +..     .. .+
T Consensus       129 -~~l~~~i~~------~t~lv~~~~~~nptG~~~~l~~i~~la~~~~~~~~~~livD~a~~~~~~~-~~~-----~~-~~  194 (393)
T 1n8p_A          129 -NDLPQLIKE------NTKLVWIETPTNPTLKVTDIQKVADLIKKHAAGQDVILVVDNTFLSPYIS-NPL-----NF-GA  194 (393)
T ss_dssp             -HHHHHHSCS------SEEEEEECSSCTTTCCCCCHHHHHHHHHHHTTTTTCEEEEECTTTHHHHC-CGG-----GG-TC
T ss_pred             -HHHHHhccc------CceEEEEECCCCCcceecCHHHHHHHHHHhCCCCCCEEEEeCCccccccC-CHH-----Hc-CC
Confidence             888888753      588999999999999999999999999999    9999999999987652 211     11 37


Q ss_pred             cEEEECCccccCCCC-ce-EEEEEeccchhh
Q psy14299        156 NSVSWNPHKMLGAPL-QC-SILLIKEKGLLH  184 (448)
Q Consensus       156 D~~~~s~hK~l~~P~-g~-G~l~vr~~~~~~  184 (448)
                      |+++.|+||++++|. .. |+++.+++++..
T Consensus       195 di~~~S~sK~~g~~G~rigG~~~~~~~~~~~  225 (393)
T 1n8p_A          195 DIVVHSATKYINGHSDVVLGVLATNNKPLYE  225 (393)
T ss_dssp             SEEEEETTTTTTCSSCCCCEEEEESCHHHHH
T ss_pred             eEEEEECcccccCCCCceeEEEEeCCHHHHH
Confidence            999999999987543 15 777775444433

>2oqx_A Tryptophanase; lyase, pyridoxal phosphate, tryptophan catabolism; HET: CME EPE; 1.90A {Escherichia coli} SCOP: c.67.1.2 PDB: 2c44_A 2v1p_A* 2v0y_A*

Probab=99.75  E-value=3.2e-17  Score=169.07  Aligned_cols=164  Identities=16%  Similarity=0.152  Sum_probs=102.6

Q ss_pred             cEEEeCcHHHHHHHHHHHHHHhcCCcccccCCCCCCC-eEEEecCCCchHHH-HHHHHhCCCCCcEEEE------ecC--
Q psy14299          4 KPFLLPGGSISNMYSICLARYRLDPDTKRKGLSHLPP-LCMFTSEDSHYSML-KAAHWLGIGMDNVIRV------KTN--   73 (448)
Q Consensus         4 ~g~~t~ggT~an~~al~~a~~~~~~~~~~~G~~~~~~-~~Vl~~~~~H~s~~-~~~~~~g~~~~~v~~v------~~~--   73 (448)
                      .++||+|||+||..++.+++.+..   ...|.   ++ +.|+++ ..|+... ......|.   .+...      +.+  
T Consensus        91 ~v~~t~~gt~A~~~al~~~~~~~~---~~~G~---~~~d~Ii~~-~~h~~t~~~~~~~~~~---~~~~~~~~~~~~~~~~  160 (467)
T 2oqx_A           91 YTIPTHQGRGAEQIYIPVLIKKRE---QEKGL---DRSKMVAFS-NYFFDTTQGHSQINGC---TVRNVYIKEAFDTGVR  160 (467)
T ss_dssp             EEEEEC--CCSHHHHHHHHHHHHH---HHHCC---CTTTCEEEE-SSCCHHHHHHHHHTTC---EEEECBCTTTTCTTSC
T ss_pred             cEEEcCCcHHHHHHHHHHHhcccc---ccCCC---CccceEEec-ccccccchhhhhccCc---ceeeccccccccCCCC
Confidence            478999999999999988875300   00011   11 346666 6785533 33333444   23222      222  


Q ss_pred             --CCCCcCHHHHHHHHHHhhhcCCCcEEEEEeccCCcc-ccc---cCHHHHHHHHHHcCCEEEEeccccc-ccc------
Q psy14299         74 --ERGQMICSFLEQTIQTSLAEKKIPLFVNATAGTTVL-GAF---DPLDEIATVCEKYDLWMHVDACWGG-SLI------  140 (448)
Q Consensus        74 --~~g~id~e~Le~~l~~~~~~~~~~~lVv~~~~~t~t-G~~---~~l~~I~~ia~~~g~~l~VD~A~~~-~~~------  140 (448)
                        .++.+|+++|++++++..  ..++++|+++.+++++ |.+   +++++|.++|++||+++|+|++|+. +..      
T Consensus       161 ~~~~~~~d~~~Le~~i~~~~--~~~~~~vi~~~~~n~~gG~~~~~~~l~~i~~la~~~gi~li~D~a~~~e~~~~~~~~~  238 (467)
T 2oqx_A          161 YDFKGNFDLEGLERGIEEVG--PNNVPYIVATITSNSAGGQPVSLANLKAMYSIAKKYDIPVVMDSARFAENAYFIKQRE  238 (467)
T ss_dssp             CTTTTCBCHHHHHHHHHHHC--GGGCCCEEEESSBCGGGCBCCCHHHHHHHHHHHHHTTCCEEEECTTHHHHHHHHHHHC
T ss_pred             CCccCCcCHHHHHHHHHhcC--CCceeEEEEeccccCCCCccCCHHHHHHHHHHHHHcCCEEEEEchhhhhhhhhccccc
Confidence              356899999999997521  1247899999999987 654   5689999999999999999988876 332      


Q ss_pred             --cccchhhhhc--CCCCccEEEECCccccCCCCceEEEEEecc
Q psy14299        141 --FSEKYSFVLK--GINRANSVSWNPHKMLGAPLQCSILLIKEK  180 (448)
Q Consensus       141 --~~~~~~~~~~--~~~~aD~~~~s~hK~l~~P~g~G~l~vr~~  180 (448)
                        ........+.  ....+|++++++||+++.|.| |+++.+++
T Consensus       239 ~~~~g~~~~~~~~~~~~~~d~~~~s~sK~~g~~~G-g~~~~~~~  281 (467)
T 2oqx_A          239 AEYKDWTIEQITRETYKYADMLAMSAKKDAMVPMG-GLLCMKDD  281 (467)
T ss_dssp             GGGTTSCHHHHHHHHGGGCSEEEEESSSTTCCSSC-EEEEECSG
T ss_pred             ccccCccHHHHhhhhhccCCeEEEecccccCCCCc-eEEEecCh
Confidence              0010000010  012368889999999988855 55555444

>3d6k_A Putative aminotransferase; APC82464, corynebacterium diphthe structural genomics, PSI-2, protein structure initiative; 2.00A {Corynebacterium diphtheriae}

Probab=99.74  E-value=2.3e-16  Score=160.95  Aligned_cols=161  Identities=11%  Similarity=0.017  Sum_probs=109.7

Q ss_pred             cEEEeCcHHHHHH--HHHHHHHHhcCCcccccCCCC--C-CCeEEEecCCCchHHHHHHHHhCCCCCcEEEEecCCCCCc
Q psy14299          4 KPFLLPGGSISNM--YSICLARYRLDPDTKRKGLSH--L-PPLCMFTSEDSHYSMLKAAHWLGIGMDNVIRVKTNERGQM   78 (448)
Q Consensus         4 ~g~~t~ggT~an~--~al~~a~~~~~~~~~~~G~~~--~-~~~~Vl~~~~~H~s~~~~~~~~g~~~~~v~~v~~~~~g~i   78 (448)
                      ..++|+|++++++  +.+.+......     .|-..  . +++.|+++..+|..+...++..|.   +++.+|.++++ +
T Consensus        95 ~i~~t~G~~~al~l~~~~~~l~~~~~-----~g~~~~~~~d~~~Vl~~~p~y~~~~~~~~~~g~---~~~~v~~~~~g-~  165 (422)
T 3d6k_A           95 LVVAQDGSSLNIMFDLISWSYTWGNN-----DSSRPWSAEEKVKWLCPVPGYDRHFTITEHFGF---EMINVPMTDEG-P  165 (422)
T ss_dssp             GEEECSSCHHHHHHHHHHHHHHHCCT-----TCSSCGGGSSCCEEEEEESCCHHHHHHHHHHTC---EEEEEEEETTE-E
T ss_pred             HEEEecchHHHHHHHHHHHHhcCccc-----ccccccccCCCCEEEEeCCccHHHHHHHHHcCC---EEEecCCCCCC-C
Confidence            4789999999873  33333333100     00000  0 133688888999999999999998   78899987766 9


Q ss_pred             CHHHHHHHHHHhhhcCCCcEEEE-EeccCCccccccCHH---HHHHHHH-HcCCEEEEeccccccccccc--chhhh--h
Q psy14299         79 ICSFLEQTIQTSLAEKKIPLFVN-ATAGTTVLGAFDPLD---EIATVCE-KYDLWMHVDACWGGSLIFSE--KYSFV--L  149 (448)
Q Consensus        79 d~e~Le~~l~~~~~~~~~~~lVv-~~~~~t~tG~~~~l~---~I~~ia~-~~g~~l~VD~A~~~~~~~~~--~~~~~--~  149 (448)
                      |+++|++++++     .++++|+ +.+++|+||.+.|.+   +|.++|+ +||+++++|++|+...+..+  .....  +
T Consensus       166 d~~~l~~~l~~-----~~~~~v~~~~~~~NPtG~~~~~~~l~~l~~~~~~~~~~~li~De~y~~~~~~~~~~~~~~~~~~  240 (422)
T 3d6k_A          166 DMGVVRELVKD-----PQVKGMWTVPVFGNPTGVTFSEQTCRELAEMSTAAPDFRIVWDNAYALHTLSDEFPIVHNVIEF  240 (422)
T ss_dssp             CHHHHHHHHTS-----TTEEEEEECCSSCTTTCCCCCHHHHHHHHHCCCSSTTCEEEEECTTTTCBSSSCCCCCCCHHHH
T ss_pred             CHHHHHHHHhc-----CCCeEEEEcCCCCCCCCCCCCHHHHHHHHHHHhhccCCEEEEECCccccccCCCCCCCcChhhH
Confidence            99999999853     2477777 678999999998876   7888888 99999999999974222111  00000  0


Q ss_pred             ---cCCCCccEEEECCccccCCC-CceEEEEEec
Q psy14299        150 ---KGINRANSVSWNPHKMLGAP-LQCSILLIKE  179 (448)
Q Consensus       150 ---~~~~~aD~~~~s~hK~l~~P-~g~G~l~vr~  179 (448)
                         .+....++++.+++|+ +.| ..+|++++++
T Consensus       241 ~~~~~~~~~~i~~~S~SK~-~~~GlriG~~~~~~  273 (422)
T 3d6k_A          241 AQAAGNPNRFWFMSSTSKI-THAGSGVSFFASSK  273 (422)
T ss_dssp             HHHTTCTTCEEEEEESTTT-SCTTSSCEEEECCH
T ss_pred             hhccCCCCcEEEEcChhhh-cCcccceEEEEeCH
Confidence               0112346888899998 555 3588887753

>3nx3_A Acoat, acetylornithine aminotransferase; csgid, structural genomics, center for structural genomics O infectious diseases; 1.80A {Campylobacter jejuni subsp}

Probab=99.74  E-value=4.6e-16  Score=156.91  Aligned_cols=157  Identities=17%  Similarity=0.117  Sum_probs=103.4

Q ss_pred             cEEEeCcHHHHHHHHHHHHHHhcCCcccccCCCCCCCeEEEecCCCchHHHHHHHHhCC---------CCCcEEEEecCC
Q psy14299          4 KPFLLPGGSISNMYSICLARYRLDPDTKRKGLSHLPPLCMFTSEDSHYSMLKAAHWLGI---------GMDNVIRVKTNE   74 (448)
Q Consensus         4 ~g~~t~ggT~an~~al~~a~~~~~~~~~~~G~~~~~~~~Vl~~~~~H~s~~~~~~~~g~---------~~~~v~~v~~~~   74 (448)
                      .++||+|||++|..++.+++...    ...|-  ..+.+|+.+...|.+...+....+.         -...+..++.+ 
T Consensus        95 ~v~~~~gg~ea~~~al~~~~~~~----~~~g~--~~~~vi~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-  167 (395)
T 3nx3_A           95 RVFFTNSGTESIEGAMKTARKYA----FNKGV--KGGQFIAFKHSFHGRTLGALSLTANEKYQKPFKPLISGVKFAKYN-  167 (395)
T ss_dssp             EEEEESSHHHHHHHHHHHHHHHH----HHTTC--TTCEEEEETTCCCCSSHHHHTTCCCHHHHGGGCSCCSCEEEECTT-
T ss_pred             eEEEeCCHHHHHHHHHHHHHHHh----hccCC--CCCEEEEEcCCcCCCCHHHHhhcCCcccccccCCCCCCcEEeCCC-
Confidence            57999999999999998776531    01110  1344555556666554444433221         01145566654 


Q ss_pred             CCCcCHHHHHHHHHHhhhcCCCcEEEEEeccCCccccccC----HHHHHHHHHHcCCEEEEecccccccccccchhhhhc
Q psy14299         75 RGQMICSFLEQTIQTSLAEKKIPLFVNATAGTTVLGAFDP----LDEIATVCEKYDLWMHVDACWGGSLIFSEKYSFVLK  150 (448)
Q Consensus        75 ~g~id~e~Le~~l~~~~~~~~~~~lVv~~~~~t~tG~~~~----l~~I~~ia~~~g~~l~VD~A~~~~~~~~~~~~~~~~  150 (448)
                          |+++|++++++      ++++|++..+.+++|.+.|    +++|.++|++||+++|+|++|.........+.....
T Consensus       168 ----d~~~l~~~l~~------~~~~v~~~~~~~~~G~~~~~~~~l~~l~~l~~~~~~~li~Dev~~~~g~~g~~~~~~~~  237 (395)
T 3nx3_A          168 ----DISSVEKLVNE------KTCAIILESVQGEGGINPANKDFYKALRKLCDEKDILLIADEIQCGMGRSGKFFAYEHA  237 (395)
T ss_dssp             ----CHHHHHTTCCT------TEEEEEEESEECTTSCEECCHHHHHHHHHHHHHHTCEEEEECTTTTTTTTSSSSGGGGG
T ss_pred             ----CHHHHHHhccC------CeEEEEEeCccCCCCcccCCHHHHHHHHHHHHHcCCEEEEEecccCCCcCCcchhHHhc
Confidence                89999998853      4788999888888999888    999999999999999999998742111111111111


Q ss_pred             CCCCccEEEECCccccCCCCceEEEEEecc
Q psy14299        151 GINRANSVSWNPHKMLGAPLQCSILLIKEK  180 (448)
Q Consensus       151 ~~~~aD~~~~s~hK~l~~P~g~G~l~vr~~  180 (448)
                      ++ ..|+++++  |.++++.++|+++.+++
T Consensus       238 ~~-~~d~~t~s--K~~~~G~~~G~~~~~~~  264 (395)
T 3nx3_A          238 QI-LPDIMTSA--KALGCGLSVGAFVINQK  264 (395)
T ss_dssp             TC-CCSEEEEC--GGGTTTSCCEEEEECHH
T ss_pred             CC-CCCEEEec--ccccCCCceEEEEEchh
Confidence            22 25777765  88877778898887654

>3ndn_A O-succinylhomoserine sulfhydrylase; seattle structural genomics center for infectious disease, S mycobacterium, PLP, schiff base; HET: LLP; 1.85A {Mycobacterium tuberculosis}

Probab=99.74  E-value=7.6e-17  Score=164.71  Aligned_cols=142  Identities=10%  Similarity=0.048  Sum_probs=114.0

Q ss_pred             cEEEeCcHHHHHHHHHHHHHHhcCCcccccCCCCCCCeEEEecCCCchHHHHHHHH----hCCCCCcEEEEecCCCCCcC
Q psy14299          4 KPFLLPGGSISNMYSICLARYRLDPDTKRKGLSHLPPLCMFTSEDSHYSMLKAAHW----LGIGMDNVIRVKTNERGQMI   79 (448)
Q Consensus         4 ~g~~t~ggT~an~~al~~a~~~~~~~~~~~G~~~~~~~~Vl~~~~~H~s~~~~~~~----~g~~~~~v~~v~~~~~g~id   79 (448)
                      .+++++||++++..++.++.+              +++.|+++...|.+....++.    .|.   +++.++.+     |
T Consensus        98 ~~~~~~sG~~Ai~~al~~l~~--------------~Gd~Vi~~~~~y~~~~~~~~~~~~~~g~---~~~~v~~~-----d  155 (414)
T 3ndn_A           98 AAFATASGMAAVFTSLGALLG--------------AGDRLVAARSLFGSCFVVCSEILPRWGV---QTVFVDGD-----D  155 (414)
T ss_dssp             EEEEESSHHHHHHHHHHTTCC--------------TTCEEEEESCCCHHHHHHHHTHHHHTTC---EEEEECTT-----C
T ss_pred             cEEEECCHHHHHHHHHHHHhC--------------CCCEEEEcCCccchHHHHHHHHHHHcCc---EEEEeCCC-----C
Confidence            478999999998887765432              667889999999987776643    677   78888876     8


Q ss_pred             HHHHHHHHHHhhhcCCCcEEEEEeccCCccccccCHHHHHHHHHHcCCEEEEecccccccccccchhhhhcCCCCccEEE
Q psy14299         80 CSFLEQTIQTSLAEKKIPLFVNATAGTTVLGAFDPLDEIATVCEKYDLWMHVDACWGGSLIFSEKYSFVLKGINRANSVS  159 (448)
Q Consensus        80 ~e~Le~~l~~~~~~~~~~~lVv~~~~~t~tG~~~~l~~I~~ia~~~g~~l~VD~A~~~~~~~~~~~~~~~~~~~~aD~~~  159 (448)
                      +++|++++++      ++++|++..++|++|.+.|+++|.++|++||+++++|++|+.+....+. .      .++|+++
T Consensus       156 ~~~l~~ai~~------~t~~v~le~p~NptG~~~~l~~i~~la~~~g~~livDe~~~~~~~~~~~-~------~g~div~  222 (414)
T 3ndn_A          156 LSQWERALSV------PTQAVFFETPSNPMQSLVDIAAVTELAHAAGAKVVLDNVFATPLLQQGF-P------LGVDVVV  222 (414)
T ss_dssp             HHHHHHHTSS------CCSEEEEESSCTTTCCCCCHHHHHHHHHHTTCEEEEECTTTHHHHCCCG-G------GTCSEEE
T ss_pred             HHHHHHhcCC------CCeEEEEECCCCCCCccccHHHHHHHHHHcCCEEEEECCCcccccCCch-h------cCCCeEe
Confidence            9999999854      4789999999999999999999999999999999999999866543221 0      1379999


Q ss_pred             ECCccccCCCCc--eEEEEEecc
Q psy14299        160 WNPHKMLGAPLQ--CSILLIKEK  180 (448)
Q Consensus       160 ~s~hK~l~~P~g--~G~l~vr~~  180 (448)
                      .|++|+++++..  .|+++.+++
T Consensus       223 ~S~sK~l~~~G~~~~G~vv~~~~  245 (414)
T 3ndn_A          223 YSGTKHIDGQGRVLGGAILGDRE  245 (414)
T ss_dssp             EETTTTTTCSSCCCCEEEEECHH
T ss_pred             ccCCccccCCCCceEEEEEECHH
Confidence            999999987653  677776554

>1z7d_A Ornithine aminotransferase; structural genomics consortium, SGC, malaria; 2.10A {Plasmodium yoelii yoelii} SCOP: c.67.1.4 PDB: 3lg0_A 3ntj_A

Probab=99.74  E-value=6.3e-16  Score=158.56  Aligned_cols=159  Identities=14%  Similarity=0.089  Sum_probs=93.7

Q ss_pred             cEEEeCcHHHHHHHHHHHHHHhcCCcccccCCCCCCCeEEEecCCCchHHHHHHHHhCCC-------C--CcEEEEecCC
Q psy14299          4 KPFLLPGGSISNMYSICLARYRLDPDTKRKGLSHLPPLCMFTSEDSHYSMLKAAHWLGIG-------M--DNVIRVKTNE   74 (448)
Q Consensus         4 ~g~~t~ggT~an~~al~~a~~~~~~~~~~~G~~~~~~~~Vl~~~~~H~s~~~~~~~~g~~-------~--~~v~~v~~~~   74 (448)
                      .++||+|||+||..++.+++....   ...|+....+.+|+.+...|.+...++...|..       +  ..+..+|.+ 
T Consensus       124 ~v~~~~sGseA~~~al~~a~~~~~---~~~g~~~gr~~vi~~~~~yhg~~~~~~~~~g~~~~~~~~~p~~~~v~~~~~~-  199 (433)
T 1z7d_A          124 KVLMMNTGAEANETAYKLCRKWGY---EVKKIPENMAKIVVCKNNFSGRTLGCISASTTKKCTSNFGPFAPQFSKVPYD-  199 (433)
T ss_dssp             EEEEESSHHHHHHHHHHHHHHHHH---HTSCCCTTCCEEEEETTC--------------------------CEEEECTT-
T ss_pred             eEEEeCCHHHHHHHHHHHHHHHhh---hccCCCCCCCeEEEEeCCcCCcchhhhcccCCccccccCCCCCCCeEEeCCC-
Confidence            478999999999999988764200   011221012344555556676666555554410       0  135556553 


Q ss_pred             CCCcCHHHHHHHHHHhhhcCCCcEEEEEeccCCcccccc----CHHHHHHHHHHcCCEEEEecccccccccccc-hhhhh
Q psy14299         75 RGQMICSFLEQTIQTSLAEKKIPLFVNATAGTTVLGAFD----PLDEIATVCEKYDLWMHVDACWGGSLIFSEK-YSFVL  149 (448)
Q Consensus        75 ~g~id~e~Le~~l~~~~~~~~~~~lVv~~~~~t~tG~~~----~l~~I~~ia~~~g~~l~VD~A~~~~~~~~~~-~~~~~  149 (448)
                          |+++|+++++.     .++++|+++...+++|.+.    ++++|.++|++||+++++|++|.+ ...... +....
T Consensus       200 ----d~~~le~~l~~-----~~~~~vi~ep~~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~~g-~g~~g~~~~~~~  269 (433)
T 1z7d_A          200 ----DLEALEEELKD-----PNVCAFIVEPIQGEAGVIVPSDNYLQGVYDICKKYNVLFVADEVQTG-LGRTGKLLCVHH  269 (433)
T ss_dssp             ----CHHHHHHHHTS-----TTEEEEEECSSBSTTTSBCCCTTHHHHHHHHHHHTTCEEEEECTTTT-TTTTSSSSGGGG
T ss_pred             ----CHHHHHHHhCC-----CCEEEEEEECCCCCCCccCCCHHHHHHHHHHHHHcCCEEEEecCccC-CCcCCcchhhHh
Confidence                89999999952     2477888877777789765    799999999999999999999974 211111 11111


Q ss_pred             cCCCCccEEEECCccccCCC-CceEEEEEec
Q psy14299        150 KGINRANSVSWNPHKMLGAP-LQCSILLIKE  179 (448)
Q Consensus       150 ~~~~~aD~~~~s~hK~l~~P-~g~G~l~vr~  179 (448)
                      .++ ..|+++  +.|++++. ...|+++.++
T Consensus       270 ~~~-~~di~t--~sK~l~~G~~~~G~v~~~~  297 (433)
T 1z7d_A          270 YNV-KPDVIL--LGKALSGGHYPISAVLAND  297 (433)
T ss_dssp             GTC-CCSEEE--ECGGGGTTSSCCEEEEECH
T ss_pred             cCC-CCCEEE--ECccccCCCCCeEEEEECH
Confidence            122 368775  46998854 3588888765

>3asa_A LL-diaminopimelate aminotransferase; PLP dependent aminotransferase; 2.05A {Chlamydia trachomatis} PDB: 3asb_A*

Probab=99.74  E-value=1.4e-16  Score=161.32  Aligned_cols=288  Identities=11%  Similarity=0.029  Sum_probs=173.0

Q ss_pred             cEEEeCcHHHHHHHHHHHHHHhcCCcccccCCCCCCCeEEEecCCCchHHHHHHHHhCCCCCc-EEEEecCCCCCcCHHH
Q psy14299          4 KPFLLPGGSISNMYSICLARYRLDPDTKRKGLSHLPPLCMFTSEDSHYSMLKAAHWLGIGMDN-VIRVKTNERGQMICSF   82 (448)
Q Consensus         4 ~g~~t~ggT~an~~al~~a~~~~~~~~~~~G~~~~~~~~Vl~~~~~H~s~~~~~~~~g~~~~~-v~~v~~~~~g~id~e~   82 (448)
                      ..++|+|+|+++..++. +..              +++.|+++..+|.++...++..|.   + +..+|.++++.++.+ 
T Consensus        97 ~v~~~~G~~~al~~~~~-~~~--------------~gd~Vl~~~p~y~~~~~~~~~~g~---~~~~~~~~~~~~~~~~~-  157 (400)
T 3asa_A           97 EIFISDGAKVDLFRLLS-FFG--------------PNQTVAIQDPSYPAYLDIARLTGA---KEIIALPCLQENAFFPE-  157 (400)
T ss_dssp             GEEEESCHHHHHHHHHH-HHC--------------SSCEEEEEESCCHHHHHHHHHTTC---SEEEEEECCGGGTTCCC-
T ss_pred             HEEEccChHHHHHHHHH-HcC--------------CCCEEEECCCCcHHHHHHHHHcCC---cceEecccchhcCcccC-
Confidence            57899999999776442 222              456788888999999999998888   6 888888754433321 


Q ss_pred             HHHHHHHhhhcCCCcEEEEEeccCCccccccC---HHHHHHHHHHcCCEEEEecccccccccccchhhhhcCCC---Ccc
Q psy14299         83 LEQTIQTSLAEKKIPLFVNATAGTTVLGAFDP---LDEIATVCEKYDLWMHVDACWGGSLIFSEKYSFVLKGIN---RAN  156 (448)
Q Consensus        83 Le~~l~~~~~~~~~~~lVv~~~~~t~tG~~~~---l~~I~~ia~~~g~~l~VD~A~~~~~~~~~~~~~~~~~~~---~aD  156 (448)
                      +++ +       .++++|++++++|+||.+.|   +++|+++|++||+++++|++|+...... .....+..+.   ..+
T Consensus       158 l~~-~-------~~~~~v~l~~p~nptG~~~~~~~l~~l~~~~~~~~~~li~De~~~~~~~~~-~~~~~~~~~~~~~~~~  228 (400)
T 3asa_A          158 FPE-D-------THIDILCLCSPNNPTGTVLNKDQLRAIVHYAIEHEILILFDAAYSTFISDP-SLPKSIFEIPDARFCA  228 (400)
T ss_dssp             CCT-T-------CCCSEEEEESSCTTTCCCCCHHHHHHHHHHHHHTTCEEEEECTTGGGCCCT-TSCSSGGGSTTGGGTE
T ss_pred             hhh-c-------cCccEEEEeCCCCCCCCcCCHHHHHHHHHHHHHcCCEEEEEchhhhhhcCC-CCCCchhhCCCCCCce
Confidence            221 1       25778999999999999887   6678899999999999999998532210 0001111111   134


Q ss_pred             EEEECCccccCCCC-ceEEEEEeccchhhhhccCCcccccccCcccccccCCCCCcccCCCCchhHHHHHHHHHhChHHH
Q psy14299        157 SVSWNPHKMLGAPL-QCSILLIKEKGLLHQANATAATYLFQQDKFYDVSFDTGDKSVQCGRKVDAFKLWLMWKARGNLGF  235 (448)
Q Consensus       157 ~~~~s~hK~l~~P~-g~G~l~vr~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~g~  235 (448)
                      +++.+++|+++.|. .+|+++++++ .....   .   .   +                     .-.++.          
T Consensus       229 i~~~s~sK~~g~~GlriG~~~~~~~-~~~~~---~---~---~---------------------~~~~~~----------  267 (400)
T 3asa_A          229 IEINSFSKPLGFAGIRLGWTVIPQE-LTYAD---G---H---F---------------------VIQDWE----------  267 (400)
T ss_dssp             EEEEECCGGGTTTTCCCEEEECCTT-CBCTT---S---C---B---------------------HHHHHH----------
T ss_pred             EEEecchhhcCCcchheeEEeeChh-hccch---h---h---h---------------------HHHHHH----------
Confidence            78899999997442 4788877543 21100   0   0   0                     000000          


Q ss_pred             HHHHHHhhhhccCCCccchhhhhhhhhhhhhhhhhhhhhhhccccccccccCCCCCccccccchhhHHHHHHHHHhcCcc
Q psy14299        236 RHFVDNAVDCSRGSMTFSTLLCFDLQGLLHQANATAATYLFQQDKFYDVSFDTGDKSVQCGRKVDAFKLWLMWKARGNLG  315 (448)
Q Consensus       236 ~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G  315 (448)
                       . ... .                                                .+.+.+.+.+.++..+++..   .
T Consensus       268 -~-~~~-~------------------------------------------------~~~~~~~~~~~a~~~~l~~~---~  293 (400)
T 3asa_A          268 -R-FLS-T------------------------------------------------TFNGASIPAQEAGVAGLSIL---P  293 (400)
T ss_dssp             -H-HHH-H------------------------------------------------HCCCCCHHHHHHHHHHHHHT---T
T ss_pred             -H-Hhc-c------------------------------------------------CccCCChHHHHHHHHHhCcH---H
Confidence             0 000 0                                                00011122223333344432   5


Q ss_pred             HHHHHHHHHHHHHHHHHHhhcCCCeEEeccCCceeeEEEEeeccCCCccccchhhhhhhhhhhHHHHHHHHhC-CcEEEE
Q psy14299        316 FRHFVDNAVDCSRYFLSQISQRPGFRLVIPEFQCTNICFWFIPVSLRDKVEDETWWSTLSKVAPRIKEKLVLG-GTLMIG  394 (448)
Q Consensus       316 ~~~~~~~~~~l~~~~~~~L~~~pg~~l~~~~~~~~~v~f~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~L~~~-g~~~~~  394 (448)
                      ++++.++..++++++.+.|+++ |+++. .+.....+.+.+.|.+.+.               .++.+.|.++ | +.+.
T Consensus       294 ~~~~~~~~~~~~~~l~~~L~~~-g~~~~-~~~~~~~~~~~~~~~~~~~---------------~~~~~~l~~~~g-v~v~  355 (400)
T 3asa_A          294 QLEAIHYYRENSDLLRKALLAT-GFEVF-GGEHAPYLWVKPTQANISD---------------RDLFDFFLREYH-IAIT  355 (400)
T ss_dssp             TCHHHHHHHHHHHHHHHHHHHT-TCEEE-ECSSSSEEEEECCCTTCCT---------------TTHHHHHHHHHS-EECE
T ss_pred             HHHHHHHHHHHHHHHHHHHHHC-CCeee-CCCCceEEEEeccCCCCCH---------------HHHHHHHHHhCC-EEEe
Confidence            6778888889999999999998 89886 4333334444312322221               1466777654 7 5555


Q ss_pred             eeecCCcccccEEEEEecCCCCCCHHHHHHHHHHHHHHHHHh
Q psy14299        395 YQPLQHRNLHNFFRLVTTCHPASSRQDMDYAIDQIELRGAEV  436 (448)
Q Consensus       395 ~~~~~g~~~~~~lRis~~~~~~~t~edid~l~~al~~~~~~~  436 (448)
                      ++...+...++++|+++    ++++++++++++.|+++.++.
T Consensus       356 ~g~~f~~~~~~~iRis~----~~~~e~i~~~l~~l~~~~~~~  393 (400)
T 3asa_A          356 PGIGFGRSGSGFVRFSS----LGKREDILAACERLQMAPALQ  393 (400)
T ss_dssp             EGGGGCGGGTTCEEEEC----CSCHHHHHHHHHHHHC-----
T ss_pred             ChhHhCCCCCCEEEEEe----eCCHHHHHHHHHHHHHHHHhh
Confidence            54332222247899996    468999999999999887653

>3ei9_A LL-diaminopimelate aminotransferase; lysine biosynthesis, pyridoxal 5' phosphat external aldimine, chloroplast, pyridox phosphate; HET: PL6; 1.55A {Arabidopsis thaliana} PDB: 3ei8_A* 3eib_A* 3ei6_A* 2z1z_A* 3ei5_A* 2z20_A* 3ei7_A 3eia_A*

Probab=99.74  E-value=8.7e-17  Score=164.31  Aligned_cols=284  Identities=10%  Similarity=0.061  Sum_probs=174.6

Q ss_pred             cEEEeCcHHHHHHHHHHHHHHhcCCcccccCCCCCCCeEEEecCCCchHHHHHHHHhCCCC---------CcEEEEecCC
Q psy14299          4 KPFLLPGGSISNMYSICLARYRLDPDTKRKGLSHLPPLCMFTSEDSHYSMLKAAHWLGIGM---------DNVIRVKTNE   74 (448)
Q Consensus         4 ~g~~t~ggT~an~~al~~a~~~~~~~~~~~G~~~~~~~~Vl~~~~~H~s~~~~~~~~g~~~---------~~v~~v~~~~   74 (448)
                      ..+||+|+++++.. +.....              +++.|+++...|.++...++..|...         .+++.++.++
T Consensus       121 ~i~~t~G~~~al~~-l~~l~~--------------~gd~Vl~~~p~y~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~  185 (432)
T 3ei9_A          121 DVFVSDGAKCDISR-LQVMFG--------------SNVTIAVQDPSYPAYVDSSVIMGQTGQFNTDVQKYGNIEYMRCTP  185 (432)
T ss_dssp             GEEEESCHHHHHHH-HHHHHC--------------TTCCEEEEESCCTHHHHHHHHHTCSCCEETTTTEETTCEEEECCG
T ss_pred             eEEECCChHHHHHH-HHHHcC--------------CCCEEEEeCCCCHHHHHHHHHcCCcccccccccccCceEEeccCc
Confidence            57899999999765 333332              56678999999999999999888522         1577888875


Q ss_pred             CCCcCHHHHHHHHHHhhhcCCCcEEEEEeccCCccccccC---HHHHHHHHHHcCCEEEEecccccccccccchh-hhhc
Q psy14299         75 RGQMICSFLEQTIQTSLAEKKIPLFVNATAGTTVLGAFDP---LDEIATVCEKYDLWMHVDACWGGSLIFSEKYS-FVLK  150 (448)
Q Consensus        75 ~g~id~e~Le~~l~~~~~~~~~~~lVv~~~~~t~tG~~~~---l~~I~~ia~~~g~~l~VD~A~~~~~~~~~~~~-~~~~  150 (448)
                      ++.++.+ +++        ..++++|++++++|++|.+.+   +++|+++|++||+++++|++|+.+........ ..+.
T Consensus       186 ~~~~~~~-l~~--------~~~~~~v~l~~p~NPtG~~~~~~~l~~l~~la~~~~~~li~Dea~~~~~~~~~~~~~~~~~  256 (432)
T 3ei9_A          186 ENGFFPD-LST--------VGRTDIIFFCSPNNPTGAAATREQLTQLVEFAKKNGSIIVYDSAYAMYMSDDNPRSIFEIP  256 (432)
T ss_dssp             GGTTSCC-GGG--------CCCCSEEEEESSCTTTCCCCCHHHHHHHHHHHHHHTCEEEEECTTGGGCCSSCCSSGGGST
T ss_pred             ccCCcCC-hhh--------CCCCCEEEEeCCCCCCCCCCCHHHHHHHHHHHHHcCcEEEEccchHhhccCCCCCChhhcC
Confidence            4333222 221        135788999999999998865   67777889999999999999996543211101 0111


Q ss_pred             CCCCccEEEECCccccCCC-CceEEEEEeccch-------hhhhccCCcccccccCcccccccCCCCCcccCCCCchhHH
Q psy14299        151 GINRANSVSWNPHKMLGAP-LQCSILLIKEKGL-------LHQANATAATYLFQQDKFYDVSFDTGDKSVQCGRKVDAFK  222 (448)
Q Consensus       151 ~~~~aD~~~~s~hK~l~~P-~g~G~l~vr~~~~-------~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  222 (448)
                      +....++++.+++|+++.| ..+|+++++++..       ....... ....                            
T Consensus       257 ~~~~~~i~~~S~SK~~g~~G~r~G~~~~~~~~~~~~~~~~~~~~~~~-~~~~----------------------------  307 (432)
T 3ei9_A          257 GAEEVAMETASFSNYAGFTGVRLGWTVIPKKLLYSDGFPVAKDFNRI-ICTC----------------------------  307 (432)
T ss_dssp             TGGGTEEEEEESHHHHCTTTTCCEEEECCTTCBCTTSCBHHHHHHHH-HHHS----------------------------
T ss_pred             CCCCeEEEEecchhccCCcccceEEEEEChHHhhcchHHHHHHHHHH-hccc----------------------------
Confidence            1123568899999999743 4578877755421       0100000 0000                            


Q ss_pred             HHHHHHHhChHHHHHHHHHhhhhccCCCccchhhhhhhhhhhhhhhhhhhhhhhccccccccccCCCCCccccccchhhH
Q psy14299        223 LWLMWKARGNLGFRHFVDNAVDCSRGSMTFSTLLCFDLQGLLHQANATAATYLFQQDKFYDVSFDTGDKSVQCGRKVDAF  302 (448)
Q Consensus       223 ~~~~~~~~g~~g~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  302 (448)
                                                                                            ..+.+.+.+.
T Consensus       308 ----------------------------------------------------------------------~~~~~~~~~~  317 (432)
T 3ei9_A          308 ----------------------------------------------------------------------FNGASNISQA  317 (432)
T ss_dssp             ----------------------------------------------------------------------CCCSCHHHHH
T ss_pred             ----------------------------------------------------------------------cCCCCHHHHH
Confidence                                                                                  0000011111


Q ss_pred             HHHHHHHHhcCccHHHHHHHHHHHHHHHHHHhhcCCCeEEeccCCceeeEEEEeeccCCCccccchhhhhhhhhhhHHHH
Q psy14299        303 KLWLMWKARGNLGFRHFVDNAVDCSRYFLSQISQRPGFRLVIPEFQCTNICFWFIPVSLRDKVEDETWWSTLSKVAPRIK  382 (448)
Q Consensus       303 ~~~~~~~~~~~~G~~~~~~~~~~l~~~~~~~L~~~pg~~l~~~~~~~~~v~f~~~~~~~~~~~~~~~~~~~~~~~~~~i~  382 (448)
                      ++..++...+.+.++++.++..++++++.+.|+++ |+++. .+.....+.+.+ + +..               ..++.
T Consensus       318 a~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~~~-g~~~~-~~~~~~~~~~~~-~-~~~---------------~~~~~  378 (432)
T 3ei9_A          318 GALACLTPEGLEAMHKVIGFYKENTNIIIDTFTSL-GYDVY-GGKNAPYVWVHF-P-NQS---------------SWDVF  378 (432)
T ss_dssp             HHHHHSSHHHHHHHHHHHHHHHHHHHHHHHHHHHT-TCCEE-ECSSSSEEEEEC-T-TSC---------------HHHHH
T ss_pred             HHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHC-Cceec-CCCcceEEEEEC-C-CCC---------------HHHHH
Confidence            11112211122346677888899999999999998 88876 433444333332 2 221               23667


Q ss_pred             HHHHhC-CcEEEEeeecCCcccccEEEEEecCCCCCCHHHHHHHHHHHHHHHH
Q psy14299        383 EKLVLG-GTLMIGYQPLQHRNLHNFFRLVTTCHPASSRQDMDYAIDQIELRGA  434 (448)
Q Consensus       383 ~~L~~~-g~~~~~~~~~~g~~~~~~lRis~~~~~~~t~edid~l~~al~~~~~  434 (448)
                      +.|+++ | +.+.++...+...++++|+++.    +++++++++++.|++-.+
T Consensus       379 ~~ll~~~g-v~v~~g~~f~~~~~~~iRis~~----~~~e~l~~~l~rl~~~~~  426 (432)
T 3ei9_A          379 AEILEKTH-VVTTPGSGFGPGGEGFVRVSAF----GHRENILEACRRFKQLYK  426 (432)
T ss_dssp             HHHHHHHC-EECEEGGGGCGGGTTEEEEECC----SCHHHHHHHHHHHHHHHT
T ss_pred             HHHHHHCC-EEEeCchHhCCCCCCEEEEEec----CCHHHHHHHHHHHHHHhh
Confidence            777765 7 5565554433323489999984    489999999998887543

>1ibj_A CBL, cystathionine beta-lyase; PLP-dependent enzyme, methionine biosynthesis, transsulfurat lyase; HET: PLP; 2.30A {Arabidopsis thaliana} SCOP: c.67.1.3

Probab=99.73  E-value=1.8e-17  Score=171.72  Aligned_cols=143  Identities=14%  Similarity=0.097  Sum_probs=112.7

Q ss_pred             cEEEeCcHHHHHHHHHHHHHHhcCCcccccCCCCCCCeEEEecCCCchHHHHHH----HHhCCCCCcEEEEecCCCCCcC
Q psy14299          4 KPFLLPGGSISNMYSICLARYRLDPDTKRKGLSHLPPLCMFTSEDSHYSMLKAA----HWLGIGMDNVIRVKTNERGQMI   79 (448)
Q Consensus         4 ~g~~t~ggT~an~~al~~a~~~~~~~~~~~G~~~~~~~~Vl~~~~~H~s~~~~~----~~~g~~~~~v~~v~~~~~g~id   79 (448)
                      ..+++++|++++..++. ..              .+++.|+++...|.++...+    +..|.   +++.++.+     |
T Consensus       150 ~~i~~~sGt~al~~~l~-~~--------------~~Gd~Vi~~~~~y~~~~~~~~~~~~~~G~---~v~~v~~~-----d  206 (464)
T 1ibj_A          150 RAFCFTSGMAALSAVTH-LI--------------KNGEEIVAGDDVYGGSDRLLSQVVPRSGV---VVKRVNTT-----K  206 (464)
T ss_dssp             EEEEESSHHHHHHHHHT-TS--------------CTTCEEEEESSCCHHHHHHHHHTSGGGTC---EEEEECTT-----S
T ss_pred             eEEEECCHHHHHHHHHH-Hh--------------CCCCEEEEECCCchhHHHHHHHHHHHcCC---EEEEeCCC-----C
Confidence            46888999998765542 11              26677888999999887653    44566   68888865     8


Q ss_pred             HHHHHHHHHHhhhcCCCcEEEEEeccCCccccccCHHHHHHHHHHcCCEEEEecccccccccccchhhhhcCCCCccEEE
Q psy14299         80 CSFLEQTIQTSLAEKKIPLFVNATAGTTVLGAFDPLDEIATVCEKYDLWMHVDACWGGSLIFSEKYSFVLKGINRANSVS  159 (448)
Q Consensus        80 ~e~Le~~l~~~~~~~~~~~lVv~~~~~t~tG~~~~l~~I~~ia~~~g~~l~VD~A~~~~~~~~~~~~~~~~~~~~aD~~~  159 (448)
                      +++|++++++      ++++|++++++|++|.+.|+++|+++|++||+++++|++|+.+....+.     . . .+|+++
T Consensus       207 ~~~l~~~i~~------~tk~v~l~~p~NptG~v~~l~~i~~la~~~gi~livDea~~~g~~~~~~-----~-~-~~div~  273 (464)
T 1ibj_A          207 LDEVAAAIGP------QTKLVWLESPTNPRQQISDIRKISEMAHAQGALVLVDNSIMSPVLSRPL-----E-L-GADIVM  273 (464)
T ss_dssp             HHHHHHHCCS------SEEEEEECSSCTTTCCCCCHHHHHHHHHTTTCEEEEECTTTCTTTCCGG-----G-T-TCSEEE
T ss_pred             HHHHHHHhcc------CceEEEEeCCCCCCCEeecHHHHHHHHHHcCCEEEEECCCcccccCChh-----h-c-CCEEEE
Confidence            9999998853      5899999999999999999999999999999999999999876542111     1 1 479999


Q ss_pred             ECCccccCCCCce--EEEEEeccch
Q psy14299        160 WNPHKMLGAPLQC--SILLIKEKGL  182 (448)
Q Consensus       160 ~s~hK~l~~P~g~--G~l~vr~~~~  182 (448)
                      .++||++++|.|+  |+++++++.+
T Consensus       274 ~S~sK~~~g~~Gl~~G~l~~~~~~l  298 (464)
T 1ibj_A          274 HSATKFIAGHSDVMAGVLAVKGEKL  298 (464)
T ss_dssp             EETTTTTTCSSCCCCEEEEECSHHH
T ss_pred             ECCcccccCCCCCcEEEEEEChHHH
Confidence            9999999999876  8888875443

>3g7q_A Valine-pyruvate aminotransferase; NP_462565.1, structur genomics, joint center for structural genomics, JCSG, prote structure initiative; HET: MSE; 1.80A {Salmonella typhimurium}

Probab=99.73  E-value=2.4e-16  Score=159.78  Aligned_cols=156  Identities=11%  Similarity=0.016  Sum_probs=99.4

Q ss_pred             cEEEeCcHHHHHHHHHHHHHHhcCCcccccCCCCCCCeEEEec-CCCchHHHHHHHHhC----CCCCcEEEEecCC-CCC
Q psy14299          4 KPFLLPGGSISNMYSICLARYRLDPDTKRKGLSHLPPLCMFTS-EDSHYSMLKAAHWLG----IGMDNVIRVKTNE-RGQ   77 (448)
Q Consensus         4 ~g~~t~ggT~an~~al~~a~~~~~~~~~~~G~~~~~~~~Vl~~-~~~H~s~~~~~~~~g----~~~~~v~~v~~~~-~g~   77 (448)
                      ..++|+|||+++.+++.+++.+        |-. .....|+++ ..+|..+...+...+    .+. .+..++.+. ++.
T Consensus       100 ~i~~t~G~t~al~~~~~~l~~~--------gd~-~~~~~vi~~~~p~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~  169 (417)
T 3g7q_A          100 NIALTNGSQSAFFYLFNLFAGR--------RAD-GSTKKVLFPLAPEYIGYADSGLEDDLFVSARP-NIELLPEGQFKYH  169 (417)
T ss_dssp             GEEEESCHHHHHHHHHHHHSBC-------------CCBEEEESSCCCHHHHHC-----CCEEECCC-EEEEEGGGEEEEE
T ss_pred             cEEEeCCcHHHHHHHHHHHcCC--------Ccc-CCcceEEEeCCCccccchhhccchhhhccccC-cccccCCcccccc
Confidence            5799999999999988776542        100 011167776 677777766554322    211 344444331 357


Q ss_pred             cCHHHHHHHHHHhhhcCCCcEEEEEeccCCccccccC---HHHHHHHHHHcCCEEEEecccccccccccchhhhhcCCCC
Q psy14299         78 MICSFLEQTIQTSLAEKKIPLFVNATAGTTVLGAFDP---LDEIATVCEKYDLWMHVDACWGGSLIFSEKYSFVLKGINR  154 (448)
Q Consensus        78 id~e~Le~~l~~~~~~~~~~~lVv~~~~~t~tG~~~~---l~~I~~ia~~~g~~l~VD~A~~~~~~~~~~~~~~~~~~~~  154 (448)
                      +|+++|+  +.      .++++|++++++|++|.+.|   +++|.++|++||+++++|++|+.......... .......
T Consensus       170 ~d~~~l~--~~------~~~~~v~~~~p~NptG~~~~~~~~~~l~~~a~~~~~~li~De~~~~~~~~~~~~~-~~~~~~~  240 (417)
T 3g7q_A          170 VDFEHLH--IG------EETGMICVSRPTNPTGNVITDEELMKLDRLANQHNIPLVIDNAYGVPFPGIIFSE-ARPLWNP  240 (417)
T ss_dssp             CCGGGCC--CC------TTEEEEEEESSCTTTCCCCCHHHHHHHHHHHHHTTCCEEEECTTCTTTTCCBCSC-CCCCCCT
T ss_pred             cCHHHhc--cc------cCceEEEECCCCCCCCCccCHHHHHHHHHHHHHcCCEEEEeCCCccccccccccc-cccCCCC
Confidence            8999987  32      25889999999999999988   89999999999999999999975321111000 0011123


Q ss_pred             ccEEEECCccccCCCCceEEEEEe
Q psy14299        155 ANSVSWNPHKMLGAPLQCSILLIK  178 (448)
Q Consensus       155 aD~~~~s~hK~l~~P~g~G~l~vr  178 (448)
                      .++++.+++|++.....+|+++..
T Consensus       241 ~~i~~~s~sK~~~~G~r~G~~~~~  264 (417)
T 3g7q_A          241 NIILCMSLSKLGLPGSRCGIIIAN  264 (417)
T ss_dssp             TEEEEEESGGGTCTTSCCEEEECC
T ss_pred             CEEEEEechhccCCCcceEEEEeC
Confidence            578889999964433457776653

>3f6t_A Aspartate aminotransferase; YP_194538.1, STRU genomics, joint center for structural genomics, JCSG, prote structure initiative; HET: LLP; 2.15A {Lactobacillus acidophilus ncfm}

Probab=99.73  E-value=1.4e-16  Score=167.98  Aligned_cols=159  Identities=13%  Similarity=0.095  Sum_probs=120.1

Q ss_pred             cEEEeCcHHHHHHHHHHHHHHh-cCCcccccCCCCCCCeEEEecCCCchHHHHHHHHhCCCCCcEEEEecC----CCCCc
Q psy14299          4 KPFLLPGGSISNMYSICLARYR-LDPDTKRKGLSHLPPLCMFTSEDSHYSMLKAAHWLGIGMDNVIRVKTN----ERGQM   78 (448)
Q Consensus         4 ~g~~t~ggT~an~~al~~a~~~-~~~~~~~~G~~~~~~~~Vl~~~~~H~s~~~~~~~~g~~~~~v~~v~~~----~~g~i   78 (448)
                      ..++|+|||+++.+++.+...+ +.          .+++.|+++..+|.++...++..|.   .+..++++    .++.+
T Consensus       166 ~i~~t~G~t~al~~~~~~l~~~~l~----------~~gd~Viv~~p~~~~~~~~~~~~g~---~~~~v~~~~~~~~~~~~  232 (533)
T 3f6t_A          166 DLFPTEGGTAAIVYAFHSLAENHLL----------KKGDKIAINEPIFTPYLRIPELKDY---ELVEVDLHSYEKNDWEI  232 (533)
T ss_dssp             EEEEEEHHHHHHHHHHHHHHHTTSS----------CTTCEEEEESSCCHHHHTSGGGGGS---EEEEECCCEETTTTSEE
T ss_pred             eEEEECCHHHHHHHHHHHhhhhhcc----------CCcCEEEEcCCCcHHHHHHHHHcCC---eEEEEEecCCcccCCCC
Confidence            5899999999998887753222 11          2677899999999999999888888   68888874    35789


Q ss_pred             CHHHHHHHHHHhhhcCCCcEEEEEeccCCccccccCHH---HHHHHHH-HcCCEEEEecccccccccccchhhhhcCCCC
Q psy14299         79 ICSFLEQTIQTSLAEKKIPLFVNATAGTTVLGAFDPLD---EIATVCE-KYDLWMHVDACWGGSLIFSEKYSFVLKGINR  154 (448)
Q Consensus        79 d~e~Le~~l~~~~~~~~~~~lVv~~~~~t~tG~~~~l~---~I~~ia~-~~g~~l~VD~A~~~~~~~~~~~~~~~~~~~~  154 (448)
                      |+++|++++++      ++++|++++++|++|.+.|.+   +|+++|+ +||+++++|++|+............   ...
T Consensus       233 d~~~l~~~l~~------~~k~v~l~~p~NPtG~~~~~~~l~~l~~la~~~~~~~li~De~y~~~~~~~~~~~~~---~~~  303 (533)
T 3f6t_A          233 EPNEIEKLKDP------SIKALIVVNPTNPTSKEFDTNALNAIKQAVEKNPKLMIISDEVYGAFVPNFKSIYSV---VPY  303 (533)
T ss_dssp             CHHHHHHHSCT------TEEEEEEESSCTTTCBCCCHHHHHHHHHHHHHCTTCEEEEECTTGGGSTTCCCHHHH---SGG
T ss_pred             CHHHHHHHhCC------CCeEEEEeCCCCCCccccCHHHHHHHHHHHHhCCCCEEEEcCCccccccCccCHhhc---CCC
Confidence            99999998853      588999999999999997766   7888888 6899999999998544321111111   113


Q ss_pred             ccEEEECCccccCCCCc--eEEEEEeccchhhh
Q psy14299        155 ANSVSWNPHKMLGAPLQ--CSILLIKEKGLLHQ  185 (448)
Q Consensus       155 aD~~~~s~hK~l~~P~g--~G~l~vr~~~~~~~  185 (448)
                      .++++.|++|.++. +|  +|+++++++.....
T Consensus       304 ~~i~~~S~SK~~g~-~G~RiG~l~~~~~~~~~~  335 (533)
T 3f6t_A          304 NTMLVYSYSKLFGC-TGWRLGVIALNEKNVFDD  335 (533)
T ss_dssp             GEEEEEESHHHHTC-GGGCEEEEEEESSCHHHH
T ss_pred             CEEEEecCcccCCC-cccceEEEEECcHHHHHH
Confidence            45889999999874 45  78888877644433

>2eo5_A 419AA long hypothetical aminotransferase; PLP enzyme, structural genomics, NPPSFA, N project on protein structural and functional analyses; HET: PLP; 1.90A {Sulfolobus tokodaii}

Probab=99.73  E-value=8.7e-16  Score=156.61  Aligned_cols=161  Identities=14%  Similarity=0.082  Sum_probs=106.1

Q ss_pred             cEEEeCcHHHHHHHHHHHHHHhcCCcccccCCCCCCCeEEEecCCCchHHHHHHHHhCCC----------CCcEEEEecC
Q psy14299          4 KPFLLPGGSISNMYSICLARYRLDPDTKRKGLSHLPPLCMFTSEDSHYSMLKAAHWLGIG----------MDNVIRVKTN   73 (448)
Q Consensus         4 ~g~~t~ggT~an~~al~~a~~~~~~~~~~~G~~~~~~~~Vl~~~~~H~s~~~~~~~~g~~----------~~~v~~v~~~   73 (448)
                      .++||+|||++|..++.+++..            ..+.+|+.+...|.+...++...|..          ...+..+|.+
T Consensus       106 ~v~~~~gg~ea~~~ai~~~~~~------------~~~~vi~~~p~yh~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~  173 (419)
T 2eo5_A          106 KVFFSNSGTEAIEASIKVVKNT------------GRKYIIAFLGGFHGRTFGSISLTASKAVQRSIVGPFMPGVIHVPYP  173 (419)
T ss_dssp             EEEEESSHHHHHHHHHHHHHTT------------SCCEEEEETTCCCCSSHHHHHHCCSCGGGGCSSCCCCTTEEEECCC
T ss_pred             EEEEeCchHHHHHHHHHHHHHh------------hCCcEEEECCCcCCCCHhhHhhcCCccccccccCCCCCCCEEECCC
Confidence            5899999999999999887653            12345555667787776666554321          1247788876


Q ss_pred             CCCC----------------cCHHHHH-HHHHHhhhcCCCcEEEEEeccCCccccccC----HHHHHHHHHHcCCEEEEe
Q psy14299         74 ERGQ----------------MICSFLE-QTIQTSLAEKKIPLFVNATAGTTVLGAFDP----LDEIATVCEKYDLWMHVD  132 (448)
Q Consensus        74 ~~g~----------------id~e~Le-~~l~~~~~~~~~~~lVv~~~~~t~tG~~~~----l~~I~~ia~~~g~~l~VD  132 (448)
                      .+.+                +|+++|+ +++++.. ...++++|+++..++++|.+.|    +++|.++|++||+++|+|
T Consensus       174 ~~~~~~~g~~~~~~~~~~~~~~~~~l~~~~i~~~~-~~~~~~~vi~~p~~~~tG~~~~~~~~l~~l~~l~~~~~~~li~D  252 (419)
T 2eo5_A          174 NPYRNPWHINGYENPSELVNRVIEFIEDYIFVNLV-PPEEVAGIFFEPIQGEGGYVIPPKNFFAELQKLAKKYGILLVDD  252 (419)
T ss_dssp             CSSSCTTCCCTTTCHHHHHHHHHHHHHHTHHHHTC-CGGGEEEEEECSSBTTTTSBCCCTTHHHHHHHHHHHHTCEEEEE
T ss_pred             ccccccccccccccchhhHHHHHHHHHHHHHhhcc-CCCCEEEEEEeCccCCCCCccCCHHHHHHHHHHHHHcCCEEEEe
Confidence            5432                4788999 8887420 0024567777666667898776    999999999999999999


Q ss_pred             cccccccccccchhhhhcCCCCccEEEECCccccCCC-CceEEEEEecc
Q psy14299        133 ACWGGSLIFSEKYSFVLKGINRANSVSWNPHKMLGAP-LQCSILLIKEK  180 (448)
Q Consensus       133 ~A~~~~~~~~~~~~~~~~~~~~aD~~~~s~hK~l~~P-~g~G~l~vr~~  180 (448)
                      ++|...............++ ..|++++  .|+++++ .++|+++.+++
T Consensus       253 E~~~~~g~~g~~~~~~~~~~-~~d~~t~--sK~~~~G~~riG~~~~~~~  298 (419)
T 2eo5_A          253 EVQMGLGRTGKLFAIENFNT-VPDVITL--AKALGGGIMPIGATIFRKD  298 (419)
T ss_dssp             CTTTTTTTTSSSSGGGGGTC-CCSEEEE--CGGGGTTTSCCEEEEEEGG
T ss_pred             ccccCCccCcchhhHHhcCC-CCCEEEe--cccccCCccceEEEEEchH
Confidence            99984221111011111122 3577654  5988876 78899888664

>2oat_A Ornithine aminotransferase; 5-fluoromethylornithine, PLP-dependent ENZ pyridoxal phosphate; HET: PFM; 1.95A {Homo sapiens} SCOP: c.67.1.4 PDB: 1oat_A* 2byj_A* 2byl_A* 1gbn_A* 2can_A*

Probab=99.73  E-value=5.8e-16  Score=159.20  Aligned_cols=161  Identities=16%  Similarity=0.069  Sum_probs=104.8

Q ss_pred             cEEEeCcHHHHHHHHHHHHHHhcCCcccccCCCCCCCeEEEecCCCchHHHHHHHHhCC-------CC--CcEEEEecCC
Q psy14299          4 KPFLLPGGSISNMYSICLARYRLDPDTKRKGLSHLPPLCMFTSEDSHYSMLKAAHWLGI-------GM--DNVIRVKTNE   74 (448)
Q Consensus         4 ~g~~t~ggT~an~~al~~a~~~~~~~~~~~G~~~~~~~~Vl~~~~~H~s~~~~~~~~g~-------~~--~~v~~v~~~~   74 (448)
                      .++||+|||+||..++.+++....   .+.|+....+.+|+.+...|.+...++...|.       ++  ..+..+|.+ 
T Consensus       135 ~v~~~~sGseA~~~al~~~~~~~~---~~~g~~~g~~~vi~~~~~yhg~~~~~~~~~g~~~~~~~~~p~~~~v~~~~~~-  210 (439)
T 2oat_A          135 KVLPMNTGVEAGETACKLARKWGY---TVKGIQKYKAKIVFAAGNFWGRTLSAISSSTDPTSYDGFGPFMPGFDIIPYN-  210 (439)
T ss_dssp             EEEEESSHHHHHHHHHHHHHHHHH---HTTCCCTTCCEEEEETTCCCCSSHHHHTTCCCHHHHTTSCSCCTTEEEECSS-
T ss_pred             EEEEeCCHHHHHHHHHHHHHHHhh---hccCCCCCCCeEEEEcCCCCCCCHhHhhcCCChhcccCCCCCCCCeEEeCCC-
Confidence            478999999999999988774200   01122101235566666777777666655441       10  246667654 


Q ss_pred             CCCcCHHHHHHHHHHhhhcCCCcEEEEEeccCCcccccc----CHHHHHHHHHHcCCEEEEecccccccccccchhhhhc
Q psy14299         75 RGQMICSFLEQTIQTSLAEKKIPLFVNATAGTTVLGAFD----PLDEIATVCEKYDLWMHVDACWGGSLIFSEKYSFVLK  150 (448)
Q Consensus        75 ~g~id~e~Le~~l~~~~~~~~~~~lVv~~~~~t~tG~~~----~l~~I~~ia~~~g~~l~VD~A~~~~~~~~~~~~~~~~  150 (448)
                          |+++|++++++     .++++|+++...+++|.+.    ++++|.++|++||+++++|++|.+.......+.....
T Consensus       211 ----d~~~le~~l~~-----~~~~~vi~ep~~~~~G~~~~~~~~l~~l~~l~~~~gillI~DEv~~g~g~~g~~~~~~~~  281 (439)
T 2oat_A          211 ----DLPALERALQD-----PNVAAFMVEPIQGEAGVVVPDPGYLMGVRELCTRHQVLFIADEIQTGLARTGRWLAVDYE  281 (439)
T ss_dssp             ----CHHHHHHHTTS-----TTEEEEEECSSBTTTTSBCCCTTHHHHHHHHHHHTTCEEEEECTTTTTTTTSSSSGGGGG
T ss_pred             ----CHHHHHHHhCC-----CCEEEEEEECCCCCCCCcCCCHHHHHHHHHHHHHcCCEEEEeccccCCccCCcchhHHHh
Confidence                89999999852     2467888877777789776    7999999999999999999999642111111111112


Q ss_pred             CCCCccEEEECCccccCCC-CceEEEEEecc
Q psy14299        151 GINRANSVSWNPHKMLGAP-LQCSILLIKEK  180 (448)
Q Consensus       151 ~~~~aD~~~~s~hK~l~~P-~g~G~l~vr~~  180 (448)
                      ++ ..|++  +++|++++. ...|+++++++
T Consensus       282 ~~-~~Di~--t~sK~l~~G~~~~G~v~~~~~  309 (439)
T 2oat_A          282 NV-RPDIV--LLGKALSGGLYPVSAVLCDDD  309 (439)
T ss_dssp             TC-CCSEE--EECGGGGTTSSCCEEEEECHH
T ss_pred             CC-CCcEE--EecccccCCCCCeEEEEECHH
Confidence            22 36876  456998864 45888888653

>3n5m_A Adenosylmethionine-8-amino-7-oxononanoate aminotr; aminotransferase, csgid; 2.05A {Bacillus anthracis}

Probab=99.73  E-value=5.3e-15  Score=152.20  Aligned_cols=165  Identities=14%  Similarity=0.107  Sum_probs=100.8

Q ss_pred             EEEeCcHHHHHHHHHHHHHHhcCCcccccCCCCCCCeEEEecCCCchHHHHHHHHhCCCC---------CcEEEEecCCC
Q psy14299          5 PFLLPGGSISNMYSICLARYRLDPDTKRKGLSHLPPLCMFTSEDSHYSMLKAAHWLGIGM---------DNVIRVKTNER   75 (448)
Q Consensus         5 g~~t~ggT~an~~al~~a~~~~~~~~~~~G~~~~~~~~Vl~~~~~H~s~~~~~~~~g~~~---------~~v~~v~~~~~   75 (448)
                      ++||+|||+||..++..++....    ..|.+ ..+.+|+.+...|.....+....+...         ..+..++....
T Consensus       110 v~~~~ggseA~~~al~~~~~~~~----~~g~~-~~~~vi~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  184 (452)
T 3n5m_A          110 IFFSNSGSEANETAFKIARQYYA----QKGEP-HRYKFMSRYRGYHGNTMATMAATGQAQRRYQYEPFASGFLHVTPPDC  184 (452)
T ss_dssp             EEEESSHHHHHHHHHHHHHHHHH----TTTCT-TCCEEEEETTCCCCSSHHHHHSCCCGGGTTTTCCCCSCEEEECCCCT
T ss_pred             EEEeCchHHHHHHHHHHHHHHHH----hcCCC-CCCEEEEECCCcCCCCHHHHhcCCchhhccccCCCCCCCeEeCCCcc
Confidence            89999999999999998884310    01110 133455556666655544444333210         12444543221


Q ss_pred             CC------------cCHHHHHHHHHHhhhcCCCcEEEEEecc-CCccccccC----HHHHHHHHHHcCCEEEEecccccc
Q psy14299         76 GQ------------MICSFLEQTIQTSLAEKKIPLFVNATAG-TTVLGAFDP----LDEIATVCEKYDLWMHVDACWGGS  138 (448)
Q Consensus        76 g~------------id~e~Le~~l~~~~~~~~~~~lVv~~~~-~t~tG~~~~----l~~I~~ia~~~g~~l~VD~A~~~~  138 (448)
                      .+            .++++|++++++.  ...++++|+++.+ .+ +|.+.|    +++|.++|++||+++++|++|.+.
T Consensus       185 ~~~~~~~~~~~~~~~~~~~le~~l~~~--~~~~~~~vi~ep~~~n-~G~~~~~~~~l~~l~~l~~~~~~llI~DEv~~g~  261 (452)
T 3n5m_A          185 YRMPGIERENIYDVECVKEVDRVMTWE--LSETIAAFIMEPIITG-GGILMAPQDYMKAVHETCQKHGALLISDEVICGF  261 (452)
T ss_dssp             TTSTTTTTSCGGGCHHHHHHHHHHHHH--CGGGEEEEEECSSBTT-TTCBCCCTTHHHHHHHHHHHHTCEEEEECTTTTT
T ss_pred             ccCccCCchhhHHHHHHHHHHHHHHhc--CCCCEEEEEEccccCC-CCeeeCCHHHHHHHHHHHHHcCCEEEEecchhCC
Confidence            11            1289999999731  1124667777777 68 998887    999999999999999999998743


Q ss_pred             cccccchhhhhcCCCCccEEEECCccccCCC-CceEEEEEecc
Q psy14299        139 LIFSEKYSFVLKGINRANSVSWNPHKMLGAP-LQCSILLIKEK  180 (448)
Q Consensus       139 ~~~~~~~~~~~~~~~~aD~~~~s~hK~l~~P-~g~G~l~vr~~  180 (448)
                      ......+.....++ ..|++++  .|.+++. ..+|+++.+++
T Consensus       262 g~~g~~~~~~~~~~-~~di~t~--sK~l~~G~~~ig~~~~~~~  301 (452)
T 3n5m_A          262 GRTGKAFGFMNYDV-KPDIITM--AKGITSAYLPLSATAVKRE  301 (452)
T ss_dssp             TTTSSSSGGGGTTC-CCSEEEE--CGGGGTTSSCCEEEEEEHH
T ss_pred             CcccccchhhhcCC-CCCEEee--cccccCCCcceEEEEECHH
Confidence            21111111111122 2577775  4887765 66788877554

>2aeu_A Hypothetical protein MJ0158; selenocysteine synthase, PLP, pyridoxal phosphate, HOMO- oligomerization, unknown function; 1.70A {Methanocaldococcus jannaschii} SCOP: c.67.1.8 PDB: 2aev_A*

Probab=99.73  E-value=9.3e-17  Score=161.65  Aligned_cols=139  Identities=12%  Similarity=0.111  Sum_probs=105.0

Q ss_pred             cEEEeCcHHHHHHHHHHHHHHhcCCcccccCCCCCCCeEEEecCC---CchHHHHHHHHhCCCCCcEEEEecCCCCCcCH
Q psy14299          4 KPFLLPGGSISNMYSICLARYRLDPDTKRKGLSHLPPLCMFTSED---SHYSMLKAAHWLGIGMDNVIRVKTNERGQMIC   80 (448)
Q Consensus         4 ~g~~t~ggT~an~~al~~a~~~~~~~~~~~G~~~~~~~~Vl~~~~---~H~s~~~~~~~~g~~~~~v~~v~~~~~g~id~   80 (448)
                      ..++|+|||+++..++.++  +              ++.|+++..   .|+++.+.++..|.   +++.+       .|+
T Consensus        78 ~~~~~~ggt~a~~~~~~~~--~--------------gd~Vl~~~~~y~~~~~~~~~~~~~g~---~~~~v-------~d~  131 (374)
T 2aeu_A           78 KCVGFNRTSSAILATILAL--K--------------PKKVIHYLPELPGHPSIERSCKIVNA---KYFES-------DKV  131 (374)
T ss_dssp             EEEEESSHHHHHHHHHHHH--C--------------CSEEEEECSSSSCCTHHHHHHHHTTC---EEEEE-------SCH
T ss_pred             eEEEEcChHHHHHHHHHhC--C--------------CCEEEEecCCCCccHHHHHHHHHcCc---EEEEe-------CCH
Confidence            4689999999999888765  3              245667766   46676667777787   66666       388


Q ss_pred             HHHHHHHHHhhhcCCCcEE-EEEeccCCccc-cccCHHHHHHHHHHcCCEEEEecccccccc-cccchhhhhcCCCCccE
Q psy14299         81 SFLEQTIQTSLAEKKIPLF-VNATAGTTVLG-AFDPLDEIATVCEKYDLWMHVDACWGGSLI-FSEKYSFVLKGINRANS  157 (448)
Q Consensus        81 e~Le~~l~~~~~~~~~~~l-Vv~~~~~t~tG-~~~~l~~I~~ia~~~g~~l~VD~A~~~~~~-~~~~~~~~~~~~~~aD~  157 (448)
                      ++|+++ .      .++++ |++++++|++| ...|+++|.++|++||+++++|++|+.+.. +...... .. . ..|+
T Consensus       132 ~~l~~~-~------~~~~~~v~~~~p~nptG~~~~~l~~i~~l~~~~~~~li~De~~~~~~~~~~~~~~~-~~-~-~~di  201 (374)
T 2aeu_A          132 GEILNK-I------DKDTLVIITGSTMDLKVIELENFKKVINTAKNKEAIVFVDDASGARVRLLFNQPPA-LK-L-GADL  201 (374)
T ss_dssp             HHHHTT-C------CTTEEEEEECBCTTSCBCCHHHHHHHHHHHHHHTCCEEEECTTHHHHHHHTTCCCH-HH-H-TCSE
T ss_pred             HHHHhc-C------CCccEEEEEccCCCCCCCCcccHHHHHHHHHHcCCEEEEECCcccccccccccCCc-cc-c-CCcE
Confidence            888776 2      25788 88999999999 899999999999999999999999887641 1100001 11 1 3689


Q ss_pred             EEECCccccCCCCceEEEEEec
Q psy14299        158 VSWNPHKMLGAPLQCSILLIKE  179 (448)
Q Consensus       158 ~~~s~hK~l~~P~g~G~l~vr~  179 (448)
                      ++.|+||++++| +.|+++.++
T Consensus       202 ~~~S~sK~l~g~-~~G~~~~~~  222 (374)
T 2aeu_A          202 VVTSTDKLMEGP-RGGLLAGKK  222 (374)
T ss_dssp             EEEETTSSSSSC-SCEEEEEEH
T ss_pred             EEecCcccccCc-ceEEEEECH
Confidence            999999998876 788887765

>1ajs_A Aspartate aminotransferase; PIG, in the presence of ligand 2-methylaspartate; HET: LLP PLA; 1.60A {Sus scrofa} SCOP: c.67.1.1 PDB: 1ajr_A* 3ii0_A* 1aat_A 2cst_A*

Probab=99.72  E-value=4.6e-17  Score=165.08  Aligned_cols=155  Identities=11%  Similarity=0.041  Sum_probs=113.0

Q ss_pred             cEEE--eCcHHHHHHHHHHHHHHhcCCcccccCCCCCCC-----eEEEecCCCchHHHHHHHHhCCCCCc-EEEEecC--
Q psy14299          4 KPFL--LPGGSISNMYSICLARYRLDPDTKRKGLSHLPP-----LCMFTSEDSHYSMLKAAHWLGIGMDN-VIRVKTN--   73 (448)
Q Consensus         4 ~g~~--t~ggT~an~~al~~a~~~~~~~~~~~G~~~~~~-----~~Vl~~~~~H~s~~~~~~~~g~~~~~-v~~v~~~--   73 (448)
                      ..++  |+|||+|+..++..++..            .++     +.|+++..+|.++...++..|.   + ++.++.+  
T Consensus        99 ~v~~~~t~gg~~a~~~~~~~~~~~------------~~g~~~~~d~Vl~~~p~y~~~~~~~~~~g~---~~~~~~~~~~~  163 (412)
T 1ajs_A           99 RVGGVQSLGGTGALRIGAEFLARW------------YNGTNNKDTPVYVSSPTWENHNGVFTTAGF---KDIRSYRYWDT  163 (412)
T ss_dssp             CEEEEEEEHHHHHHHHHHHHHHHH------------SSSSSCCCSCEEEEESCCTHHHHHHHHTTC---SCEEEEECEET
T ss_pred             cEEEEECCCcHHHHHHHHHHHHHh------------CcCcCCCCCeEEEcCCCcHHHHHHHHHcCC---ceeEEEeeecC
Confidence            4678  999999998886543321            144     5688888999999999999888   7 8888873  


Q ss_pred             CCCCcCHHHHHHHHHHhhhcCCCcEEEEEeccCCccccccC---HHHHHHHHHHcCCEEEEecccccccccc---cchhh
Q psy14299         74 ERGQMICSFLEQTIQTSLAEKKIPLFVNATAGTTVLGAFDP---LDEIATVCEKYDLWMHVDACWGGSLIFS---EKYSF  147 (448)
Q Consensus        74 ~~g~id~e~Le~~l~~~~~~~~~~~lVv~~~~~t~tG~~~~---l~~I~~ia~~~g~~l~VD~A~~~~~~~~---~~~~~  147 (448)
                      +++.+|+++|++++++.   +.+++++++++++|+||.+.|   +++|.++|++||+++++|++|.......   +....
T Consensus       164 ~~~~~d~~~l~~~l~~~---~~~~~~v~~~~p~nptG~~~~~~~l~~l~~~~~~~~~~li~De~y~~~~~~~~~~~~~~~  240 (412)
T 1ajs_A          164 EKRGLDLQGFLSDLENA---PEFSIFVLHACAHNPTGTDPTPEQWKQIASVMKRRFLFPFFDSAYQGFASGNLEKDAWAI  240 (412)
T ss_dssp             TTTEECHHHHHHHHHHS---CTTCEEEEESSSCTTTCCCCCHHHHHHHHHHHHHHTCEEEEEESCTTTTTSCHHHHTHHH
T ss_pred             CCCccCHHHHHHHHHhC---CCCcEEEEECCCCCCCCCCCCHHHHHHHHHHHHHCCCEEEEEcccccccCCcccccchHH
Confidence            56789999999999752   234678888999999998854   6789999999999999999976543311   10011


Q ss_pred             h-hcCCCCccEEEECCccccCCCCc--eEEEEE
Q psy14299        148 V-LKGINRANSVSWNPHKMLGAPLQ--CSILLI  177 (448)
Q Consensus       148 ~-~~~~~~aD~~~~s~hK~l~~P~g--~G~l~v  177 (448)
                      . +.....-++++.+++|.++. .|  +|++++
T Consensus       241 ~~~~~~~~~~i~~~s~sK~~~~-~G~riG~~~~  272 (412)
T 1ajs_A          241 RYFVSEGFELFCAQSFSKNFGL-YNERVGNLTV  272 (412)
T ss_dssp             HHHHHTTCCEEEEEECTTTSCC-GGGCEEEEEE
T ss_pred             HHHhccCCcEEEEEecccccCC-CCcceEEEEE
Confidence            0 11111123778899998864 45  788877

>3b1d_A Betac-S lyase; HET: PLP PLS EPE; 1.66A {Streptococcus anginosus} PDB: 3b1c_A* 3b1e_A*

Probab=99.57  E-value=3.1e-19  Score=180.22  Aligned_cols=157  Identities=12%  Similarity=0.054  Sum_probs=116.0

Q ss_pred             cEEEeCcHHHHHHHHHHHHHHhcCCcccccCCCCCCCeEEEecCCCchHHHHHHHHhCCCCCcEEEEecC-CC--CCcCH
Q psy14299          4 KPFLLPGGSISNMYSICLARYRLDPDTKRKGLSHLPPLCMFTSEDSHYSMLKAAHWLGIGMDNVIRVKTN-ER--GQMIC   80 (448)
Q Consensus         4 ~g~~t~ggT~an~~al~~a~~~~~~~~~~~G~~~~~~~~Vl~~~~~H~s~~~~~~~~g~~~~~v~~v~~~-~~--g~id~   80 (448)
                      ..++|+|||+++..++.++..              +++.|+++...|.++...++..|.   +++.++.+ ++  +.+|+
T Consensus        91 ~v~~~~g~~~a~~~~~~~~~~--------------~gd~vl~~~p~~~~~~~~~~~~g~---~~~~~~~~~~~g~~~~d~  153 (392)
T 3b1d_A           91 DIVFVEGVVPAISIAIQAFTK--------------EGEAVLINSPVYPPFARSVRLNNR---KLVSNSLKEENGLFQIDF  153 (392)
Confidence            468999999999888877644              456788899999999999888887   67778774 32  45899


Q ss_pred             HHHHHHHHHhhhcCCCcEEEEEeccCCccccccC---HHHHHHHHHHcCCEEEEecccccccccccchhhhhcCC----C
Q psy14299         81 SFLEQTIQTSLAEKKIPLFVNATAGTTVLGAFDP---LDEIATVCEKYDLWMHVDACWGGSLIFSEKYSFVLKGI----N  153 (448)
Q Consensus        81 e~Le~~l~~~~~~~~~~~lVv~~~~~t~tG~~~~---l~~I~~ia~~~g~~l~VD~A~~~~~~~~~~~~~~~~~~----~  153 (448)
                      ++|++.+++     .++++|++++++|++|.+.|   +++|.++|++||+++++|++|+........... +..+    .
T Consensus       154 ~~l~~~l~~-----~~~~~v~~~~~~nptG~~~~~~~l~~l~~~~~~~~~~li~De~~~~~~~~g~~~~~-~~~~~~~~~  227 (392)
T 3b1d_A          154 EQLENDIVE-----NDVKLYLLCNPHNPGGRVWEREVLEQIGHLCQKHHVILVSDEIHQDLTLFGHEHVS-FNTVSPDFK  227 (392)
Confidence            999999863     14678888999999998865   999999999999999999999875542111000 1111    1


Q ss_pred             CccEEEECCccccCCC-CceEEEEEeccchh
Q psy14299        154 RANSVSWNPHKMLGAP-LQCSILLIKEKGLL  183 (448)
Q Consensus       154 ~aD~~~~s~hK~l~~P-~g~G~l~vr~~~~~  183 (448)
                      ..++++.+++|+++.| ..+|+++++++++.
T Consensus       228 ~~~i~~~s~sK~~~~~G~r~G~~~~~~~~~~  258 (392)
T 3b1d_A          228 DFALVLSSATKTFNIAGTKNSYAIIENPTLC  258 (392)
Confidence            2357788999999744 35787777654343

>3i4j_A Aminotransferase, class III; structural GENOMICS,NYSGXRC, target 11246C, deino radiodurans, pyridoxal phosphate, transfe PSI-2; 1.70A {Deinococcus radiodurans}

Probab=99.72  E-value=1e-15  Score=156.25  Aligned_cols=171  Identities=15%  Similarity=0.114  Sum_probs=96.5

Q ss_pred             cEEEeCcHHHHHHHHHHHHHHhcCCcccccCCCCCCCeEEEecCCCchHHHHHHHHhCCCC---------C--cEEEEec
Q psy14299          4 KPFLLPGGSISNMYSICLARYRLDPDTKRKGLSHLPPLCMFTSEDSHYSMLKAAHWLGIGM---------D--NVIRVKT   72 (448)
Q Consensus         4 ~g~~t~ggT~an~~al~~a~~~~~~~~~~~G~~~~~~~~Vl~~~~~H~s~~~~~~~~g~~~---------~--~v~~v~~   72 (448)
                      .++||+|||++|..++.+++...    ...|-+ ..+.+|+.+...|.....+....+...         .  .+..+|.
T Consensus        91 ~v~~~~gg~ea~~~al~~~~~~~----~~~g~~-~~~~vi~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  165 (430)
T 3i4j_A           91 RFWAVSGGSEATESAVKLARQYH----VERGEP-GRFKVITRVPSYHGASLGSLAASGMGARRELYTPLMRPEAWPKLPK  165 (430)
T ss_dssp             EEEEESSHHHHHHHHHHHHHHHH----HHTTCT-TCCEEEEETTC-------------------------CGGGSCEECC
T ss_pred             EEEEeCcHHHHHHHHHHHHHHHH----HhcCCC-CCcEEEEEeCCcCCCCcccccccCccccccccCCcCCCCCceEcCC
Confidence            58999999999999998887531    111211 123344444545544433333222110         0  2334554


Q ss_pred             CCC---CCcCHHHHHHHHHHhhhcCCCcEEEEEeccCC-ccccccC----HHHHHHHHHHcCCEEEEecccccccccccc
Q psy14299         73 NER---GQMICSFLEQTIQTSLAEKKIPLFVNATAGTT-VLGAFDP----LDEIATVCEKYDLWMHVDACWGGSLIFSEK  144 (448)
Q Consensus        73 ~~~---g~id~e~Le~~l~~~~~~~~~~~lVv~~~~~t-~tG~~~~----l~~I~~ia~~~g~~l~VD~A~~~~~~~~~~  144 (448)
                      +..   +..|+++|++++++..  ..++.+|+++..++ ++|.+.+    +++|.++|++||+++|+|++|.........
T Consensus       166 ~~~~~~~~~~~~~le~~l~~~~--~~~~~~vi~~p~~~~~~G~~~~~~~~l~~l~~l~~~~~~~li~DEv~~~~~~~g~~  243 (430)
T 3i4j_A          166 PDPARNGAEDAEGLRALLEREG--PETVAAFMAEPVVGASDAALAPAPGYYERVRDICDEAGIIFIADEVMSGMGRCGSP  243 (430)
T ss_dssp             CCTTSCHHHHHTHHHHHHHHHC--GGGEEEEEECSSCCGGGTTCCCCTTHHHHHHHHHHHHTCEEEEECTTTTTTTTSSS
T ss_pred             CcccchhhHHHHHHHHHHHhcC--CCCEEEEEEcCcccCcCCcccCCHHHHHHHHHHHHHcCCEEEEechhhCCCcccch
Confidence            433   3457799999997521  12456777777777 8898877    999999999999999999998743211111


Q ss_pred             hhhhhc-CCCCccEEEECCccccCCC-CceEEEEEeccchhhh
Q psy14299        145 YSFVLK-GINRANSVSWNPHKMLGAP-LQCSILLIKEKGLLHQ  185 (448)
Q Consensus       145 ~~~~~~-~~~~aD~~~~s~hK~l~~P-~g~G~l~vr~~~~~~~  185 (448)
                      ...... ++ ..|.++++  |.+++. ..+|+++.++ ++...
T Consensus       244 ~~~~~~~~~-~~di~t~s--K~l~~G~~r~G~~~~~~-~i~~~  282 (430)
T 3i4j_A          244 LALSRWSGV-TPDIAVLG--KGLAAGYAPLAGLLAAP-QVYET  282 (430)
T ss_dssp             SGGGGTTTC-CCSEEEEC--GGGTTTSSCCEEEEECH-HHHHH
T ss_pred             hhhhhhcCC-CCcEEEEc--ccccCCccccEEEEECH-HHHHH
Confidence            111111 22 25777654  998853 3468877744 44333

>3dxv_A Alpha-amino-epsilon-caprolactam racemase; fold-TYPE1, pyridoxal-5'-phosphate dependent racemase, pyrid phosphate, isomerase; HET: PLP; 2.21A {Achromobacter obae} PDB: 2zuk_A* 3dxw_A*

Probab=99.72  E-value=9.6e-16  Score=156.98  Aligned_cols=161  Identities=14%  Similarity=0.042  Sum_probs=104.7

Q ss_pred             cEEEeCcHHHHHHHHHHHHHHhcCCcccccCCCCCCCeEEEecCCCchHHHHHHHHhCCCC--C---------cEEEEec
Q psy14299          4 KPFLLPGGSISNMYSICLARYRLDPDTKRKGLSHLPPLCMFTSEDSHYSMLKAAHWLGIGM--D---------NVIRVKT   72 (448)
Q Consensus         4 ~g~~t~ggT~an~~al~~a~~~~~~~~~~~G~~~~~~~~Vl~~~~~H~s~~~~~~~~g~~~--~---------~v~~v~~   72 (448)
                      ..+||+|||++|..++.+++...           .++.+|+.+...|.+...++...+...  .         .+..+|.
T Consensus       106 ~v~~~~ggsea~~~al~~~~~~~-----------~~~~vi~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  174 (439)
T 3dxv_A          106 KIWFGHSGSDANEAAYRAIVKAT-----------GRSGVIAFAGAYHGCTVGSMAFSGHSVQADAAKADGLILLPYPDPY  174 (439)
T ss_dssp             EEEEESSHHHHHHHHHHHHHHHH-----------SCCEEEEETTCCCCSSHHHHCC-------------CEEEECCCCSS
T ss_pred             EEEEeCCHHHHHHHHHHHHHHHh-----------CCCEEEEECCCCCCCcHHHHhhcCCCchhhccccCCCCCCcEEcCC
Confidence            68999999999999998876531           145677778888877776655443311  0         0123343


Q ss_pred             CCCCCc-----CHHHHHHHHHHhhhcCCCcEEEEEeccCCccccccC----HHHHHHHHHHcCCEEEEeccccccccccc
Q psy14299         73 NERGQM-----ICSFLEQTIQTSLAEKKIPLFVNATAGTTVLGAFDP----LDEIATVCEKYDLWMHVDACWGGSLIFSE  143 (448)
Q Consensus        73 ~~~g~i-----d~e~Le~~l~~~~~~~~~~~lVv~~~~~t~tG~~~~----l~~I~~ia~~~g~~l~VD~A~~~~~~~~~  143 (448)
                      +.++.-     |+++|++++++.  ...++++|++..+.+++|.+.|    +++|.++|++||+++++|++|++......
T Consensus       175 ~~~~~~~~~~~d~~~le~~l~~~--~~~~~~~vi~~p~~~~~G~~~~~~~~l~~l~~l~~~~~~~li~DE~~~g~g~~g~  252 (439)
T 3dxv_A          175 RPYRNDPTGDAILTLLTEKLAAV--PAGSIGAAFIEPIQSDGGLIVPPDGFLRKFADICRAHGILVVCDEVKVGLARSGR  252 (439)
T ss_dssp             SCBTTBTTSHHHHHHHHHHHHTS--CTTCEEEEEECSSBSTTTSBCCCTTHHHHHHHHHHHTTCEEEEECTTTCTTTTSS
T ss_pred             CcccccccHHHHHHHHHHHHHhc--CCCCEEEEEEccccCCCCCccCCHHHHHHHHHHHHHcCCEEEEeccccCCCcCch
Confidence            322222     789999999521  1235788888888888999988    99999999999999999999973211111


Q ss_pred             chhhhhcCCCCccEEEECCccccCCCCceEEEEEecc
Q psy14299        144 KYSFVLKGINRANSVSWNPHKMLGAPLQCSILLIKEK  180 (448)
Q Consensus       144 ~~~~~~~~~~~aD~~~~s~hK~l~~P~g~G~l~vr~~  180 (448)
                      .......++ ..|.++  +.|.+++...+|+++.+++
T Consensus       253 ~~~~~~~~~-~~di~s--~sK~~~~G~riG~~~~~~~  286 (439)
T 3dxv_A          253 LHCFEHEGF-VPDILV--LGKGLGGGLPLSAVIAPAE  286 (439)
T ss_dssp             SSGGGGTTC-CCSEEE--ECGGGGTTSCCEEEEEEHH
T ss_pred             hhHHHhcCC-CCCEEE--EcchhcCCcceEEEEECHH
Confidence            011111122 257774  5698885445788877553

>3fsl_A Aromatic-amino-acid aminotransferase; tyrosine aminotransferase, pyridoxal phosphate, internal ALD schiff base, amino-acid biosynthesis; HET: PLR; 2.35A {Escherichia coli k-12} SCOP: c.67.1.1 PDB: 3tat_A*

Probab=99.72  E-value=4.2e-17  Score=164.29  Aligned_cols=156  Identities=14%  Similarity=0.071  Sum_probs=115.4

Q ss_pred             cEEEeCcHHHHHHHHHHHHHHhcCCcccccCCCCCCCeEEEecCCCchHHHHHHHHhCCCCCcEEEEec--CCCCCcCHH
Q psy14299          4 KPFLLPGGSISNMYSICLARYRLDPDTKRKGLSHLPPLCMFTSEDSHYSMLKAAHWLGIGMDNVIRVKT--NERGQMICS   81 (448)
Q Consensus         4 ~g~~t~ggT~an~~al~~a~~~~~~~~~~~G~~~~~~~~Vl~~~~~H~s~~~~~~~~g~~~~~v~~v~~--~~~g~id~e   81 (448)
                      ..++|+|||+++..++.....-            .+++.|+++...|.++...++..|.   +++.+|.  ++++.+|++
T Consensus        97 ~i~~t~g~~~a~~~~~~~~~~~------------~~gd~vl~~~p~~~~~~~~~~~~g~---~~~~~~~~~~~~~~~d~~  161 (397)
T 3fsl_A           97 ATIQTLGGSGALKVGADFLKRY------------FPESGVWVSDPTWENHVAIFAGAGF---EVSTYPWYDEATNGVRFN  161 (397)
T ss_dssp             EEEEESHHHHHHHHHHHHHHHH------------CTTCCEEEESSCCHHHHHHHHHTTC---CEEEECCEETTTTEECHH
T ss_pred             EEEEcCCcHHHHHHHHHHHHhc------------CCCCeEEEeCCCchhHHHHHHHcCC---ceEEEeeeeccCCcCcHH
Confidence            5799999999998886432211            1566788999999999999999998   7888888  457899999


Q ss_pred             HHHHHHHHhhhcCCCcEEEEEeccCCccccc---cCHHHHHHHHHHcCCEEEEecccccccccc--cchh-hhhcCCCCc
Q psy14299         82 FLEQTIQTSLAEKKIPLFVNATAGTTVLGAF---DPLDEIATVCEKYDLWMHVDACWGGSLIFS--EKYS-FVLKGINRA  155 (448)
Q Consensus        82 ~Le~~l~~~~~~~~~~~lVv~~~~~t~tG~~---~~l~~I~~ia~~~g~~l~VD~A~~~~~~~~--~~~~-~~~~~~~~a  155 (448)
                      +|++.+++.   ..+++++++++++|+||.+   +++++|+++|++||+++++|++|+......  +... ....+....
T Consensus       162 ~l~~~l~~~---~~~~~~v~~~~p~nptG~~~~~~~l~~l~~~~~~~~~~li~De~~~~~~~~~~~~~~~~~~~~~~~~~  238 (397)
T 3fsl_A          162 DLLATLKTL---QAGSIVLLHPCCHNPTGADLTNDQWDAVIEILKARELIPFLDIAYQGFGAGMEEDAYAIRAIASAGLP  238 (397)
T ss_dssp             HHHHHHTTC---CTTCEEEECSSSCTTTCCCCCHHHHHHHHHHHHHTTCEEEEEESCTTSSSCTTGGGHHHHHHHHTTCC
T ss_pred             HHHHHHHhC---CCCCEEEEeCCCCCCCCcCCCHHHHHHHHHHHHhCCEEEEEecCchhhccCcccccHHHHHHHhcCCC
Confidence            999999742   2357889999999999988   456699999999999999999988665421  0000 001111223


Q ss_pred             cEEEECCccccCCC-CceEEEEE
Q psy14299        156 NSVSWNPHKMLGAP-LQCSILLI  177 (448)
Q Consensus       156 D~~~~s~hK~l~~P-~g~G~l~v  177 (448)
                      .+++.|++|.++.| ..+|++++
T Consensus       239 ~i~~~S~SK~~~~~G~riG~~~~  261 (397)
T 3fsl_A          239 ALVSNSFSKIFSLYGERVGGLSV  261 (397)
T ss_dssp             EEEEEECTTTTTCGGGCCEEEEE
T ss_pred             EEEEecccccccCcCCCeeEEEE
Confidence            57778899998743 23677765

>1uu1_A Histidinol-phosphate aminotransferase; histidine biosynthesis, pyridoxal phosphate, complete proteome; HET: PMP HSA; 2.38A {Thermotoga maritima} SCOP: c.67.1.1 PDB: 1uu0_A 1h1c_A* 1uu2_A* 2f8j_A*

Probab=99.72  E-value=2.8e-16  Score=155.07  Aligned_cols=140  Identities=11%  Similarity=-0.023  Sum_probs=108.3

Q ss_pred             cEEEeCcHHHHHHHHHHHHHHhcCCcccccCCCCCCCeEEEecCCCchHHHHHHHHhCCCCCcEEEEecCCCCCcCHHHH
Q psy14299          4 KPFLLPGGSISNMYSICLARYRLDPDTKRKGLSHLPPLCMFTSEDSHYSMLKAAHWLGIGMDNVIRVKTNERGQMICSFL   83 (448)
Q Consensus         4 ~g~~t~ggT~an~~al~~a~~~~~~~~~~~G~~~~~~~~Vl~~~~~H~s~~~~~~~~g~~~~~v~~v~~~~~g~id~e~L   83 (448)
                      ..++|+|+|+++..++.++                 ++.|+++ .+|.++...++..|.   +++.+|.++++.+|+++|
T Consensus        78 ~v~~~~G~~~al~~~~~~~-----------------gd~Vl~~-p~y~~~~~~~~~~g~---~~~~v~~~~~~~~d~~~l  136 (335)
T 1uu1_A           78 NVSVGNGADEIIYVMMLMF-----------------DRSVFFP-PTYSCYRIFAKAVGA---KFLEVPLTKDLRIPEVNV  136 (335)
T ss_dssp             GEEEESSHHHHHHHHHHHS-----------------SEEEECS-SSCHHHHHHHHHHTC---EEEECCCCTTSCCCCCCC
T ss_pred             HEEEcCChHHHHHHHHHHh-----------------CCcEEEC-CCcHHHHHHHHHcCC---eEEEeccCCCCCCCHHHc
Confidence            5789999999988887654                 2458888 999999999999998   788899887778888877


Q ss_pred             HHHHHHhhhcCCCcEEEEEeccCCccccccCHHHHHHHHHHcCCEEEEecccccccccccchhhhhcCCCCccEEEECCc
Q psy14299         84 EQTIQTSLAEKKIPLFVNATAGTTVLGAFDPLDEIATVCEKYDLWMHVDACWGGSLIFSEKYSFVLKGINRANSVSWNPH  163 (448)
Q Consensus        84 e~~l~~~~~~~~~~~lVv~~~~~t~tG~~~~l~~I~~ia~~~g~~l~VD~A~~~~~~~~~~~~~~~~~~~~aD~~~~s~h  163 (448)
                           +      ++++|++++++|++|.+.|.+++.++++.+| ++++|++|+..... +... .+. ....++++.+++
T Consensus       137 -----~------~~~~v~l~~p~nptG~~~~~~~l~~l~~~~~-~li~De~~~~~~~~-~~~~-~~~-~~~~~i~~~s~s  201 (335)
T 1uu1_A          137 -----G------EGDVVFIPNPNNPTGHVFEREEIERILKTGA-FVALDEAYYEFHGE-SYVD-FLK-KYENLAVIRTFS  201 (335)
T ss_dssp             -----C------TTEEEEEESSCTTTCCCCCHHHHHHHHHTTC-EEEEECTTHHHHCC-CCGG-GGG-TCSSEEEEEEST
T ss_pred             -----C------CCCEEEEeCCCCCCCCCCCHHHHHHHHHhCC-EEEEECcchhhcch-hHHH-Hhh-hCCCEEEEecch
Confidence                 2      4789999999999999999999999999999 99999999853211 1011 111 123568889999


Q ss_pred             cccCCCC-ceEEEEEec
Q psy14299        164 KMLGAPL-QCSILLIKE  179 (448)
Q Consensus       164 K~l~~P~-g~G~l~vr~  179 (448)
                      |+++.|. .+|++++++
T Consensus       202 K~~g~~G~r~G~~~~~~  218 (335)
T 1uu1_A          202 KAFSLAAQRVGYVVASE  218 (335)
T ss_dssp             TTTTCGGGCCEEEEECH
T ss_pred             hhcCCcccCeEEEEeCH
Confidence            9987442 378888843

>1yaa_A Aspartate aminotransferase; HET: PLP; 2.05A {Saccharomyces cerevisiae} SCOP: c.67.1.1

Probab=99.71  E-value=4.2e-17  Score=165.49  Aligned_cols=154  Identities=11%  Similarity=0.011  Sum_probs=109.6

Q ss_pred             cEEE--eCcHHHHHHHHHHHHHHhcCCcccccCCCCCCCeEEEecCCCchHHHHHHHHhCCCCCcEEEEec-CC-CCCcC
Q psy14299          4 KPFL--LPGGSISNMYSICLARYRLDPDTKRKGLSHLPPLCMFTSEDSHYSMLKAAHWLGIGMDNVIRVKT-NE-RGQMI   79 (448)
Q Consensus         4 ~g~~--t~ggT~an~~al~~a~~~~~~~~~~~G~~~~~~~~Vl~~~~~H~s~~~~~~~~g~~~~~v~~v~~-~~-~g~id   79 (448)
                      ..++  |+|||+++.+++...+.-            .+++.|+++...|.++...++..|.   +++.+|. ++ ++.+|
T Consensus        98 ~i~~~~t~g~~~a~~~~~~~~~~~------------~~gd~Vl~~~p~~~~~~~~~~~~g~---~~~~v~~~~~~~~~~d  162 (412)
T 1yaa_A           98 RVISVQSLSGTGALHISAKFFSKF------------FPDKLVYLSKPTWANHMAIFENQGL---KTATYPYWANETKSLD  162 (412)
T ss_dssp             CEEEEEEEHHHHHHHHHHHHHHHH------------CTTCCEEEEESCCTTHHHHHHTTTC---CEEEEECEETTTTEEC
T ss_pred             eEEEEeccchHhHHHHHHHHHHHh------------CCCCEEEEeCCCCccHHHHHHHcCc---eEEEEeeecCCCCccC
Confidence            4677  999999988775433321            1456688888999999999998888   7888887 43 67899


Q ss_pred             HHHHHHHHHHhhhcCCCcEEEEEeccCCccccccC---HHHHHHHHHHcCCEEEEecccccccccc---cchhh-hhcCC
Q psy14299         80 CSFLEQTIQTSLAEKKIPLFVNATAGTTVLGAFDP---LDEIATVCEKYDLWMHVDACWGGSLIFS---EKYSF-VLKGI  152 (448)
Q Consensus        80 ~e~Le~~l~~~~~~~~~~~lVv~~~~~t~tG~~~~---l~~I~~ia~~~g~~l~VD~A~~~~~~~~---~~~~~-~~~~~  152 (448)
                      +++|++++++.   ...+.++++++++|+||.+.+   +++|+++|++||+++++|++|+......   +.... .+...
T Consensus       163 ~~~l~~~l~~~---~~~~~~~~~~~p~nPtG~~~~~~~l~~l~~~~~~~~~~li~De~~~~~~~~~~~~~~~~~~~~~~~  239 (412)
T 1yaa_A          163 LNGFLNAIQKA---PEGSIFVLHSCAHNPTGLDPTSEQWVQIVDAIASKNHIALFDTAYQGFATGDLDKDAYAVRLGVEK  239 (412)
T ss_dssp             HHHHHHHHHHS---CTTCEEEEECSSCTTTCCCCCHHHHHHHHHHHHHTTCEEEEEESCTTTSSSCHHHHTHHHHHHHHH
T ss_pred             HHHHHHHHHhC---CCCCEEEEeCCCCCCCCCCCCHHHHHHHHHHHHHCCCEEEEecccccccCCcccchhHHHHHHHhc
Confidence            99999999752   112456666999999998865   6678999999999999999986543211   10000 11111


Q ss_pred             CC---ccEEEECCccccCCCCc--eEEEE
Q psy14299        153 NR---ANSVSWNPHKMLGAPLQ--CSILL  176 (448)
Q Consensus       153 ~~---aD~~~~s~hK~l~~P~g--~G~l~  176 (448)
                      ..   -++++.+++|.++ |.|  +|+++
T Consensus       240 ~~~~~~~i~~~s~sK~~~-~~GlriG~~~  267 (412)
T 1yaa_A          240 LSTVSPVFVCQSFAKNAG-MYGERVGCFH  267 (412)
T ss_dssp             TTTTCCEEEEEECTTTSC-CGGGCEEEEE
T ss_pred             CCCCcceEEEeccCCCCC-CcCCcceEEE
Confidence            11   2477889999887 656  58776

>4f4e_A Aromatic-amino-acid aminotransferase; ssgcid, structural genomics, seattle structural genomics CEN infectious disease; HET: LLP; 1.80A {Burkholderia pseudomallei} PDB: 4eff_A*

Probab=99.71  E-value=7e-17  Score=164.60  Aligned_cols=156  Identities=13%  Similarity=-0.005  Sum_probs=116.3

Q ss_pred             cEEEeCcHHHHHHHHHHHHHHhcCCcccccCCCCCCCeEEEecCCCchHHHHHHHHhCCCCCcEEEEec--CCCCCcCHH
Q psy14299          4 KPFLLPGGSISNMYSICLARYRLDPDTKRKGLSHLPPLCMFTSEDSHYSMLKAAHWLGIGMDNVIRVKT--NERGQMICS   81 (448)
Q Consensus         4 ~g~~t~ggT~an~~al~~a~~~~~~~~~~~G~~~~~~~~Vl~~~~~H~s~~~~~~~~g~~~~~v~~v~~--~~~g~id~e   81 (448)
                      ..++|+|||+++..++.....-            .+++.|+++...|.++...++..|.   +++.+|.  ++++.+|++
T Consensus       119 ~i~~t~G~t~al~~~~~~~~~~------------~~gd~Vlv~~p~~~~~~~~~~~~g~---~~~~v~~~~~~~~~~d~~  183 (420)
T 4f4e_A          119 VTAQALGGTGALKIGADFLRTL------------NPKAKVAISDPSWENHRALFDMAGF---EVVAYPYYDAKTNGVNFD  183 (420)
T ss_dssp             EEEEEEHHHHHHHHHHHHHHHH------------CTTCCEEEEESCCHHHHHHHHHTTC---CEEEEECEETTTTEECHH
T ss_pred             EEEECCccHHHHHHHHHHHHHh------------CCCCEEEEeCCCcHhHHHHHHHcCC---eEEEeeeeccccCccCHH
Confidence            5799999999998885432211            1566788999999999999999998   7889988  457899999


Q ss_pred             HHHHHHHHhhhcCCCcEEEEEeccCCccccccC---HHHHHHHHHHcCCEEEEeccccccccccc--chhh-hhcCCCCc
Q psy14299         82 FLEQTIQTSLAEKKIPLFVNATAGTTVLGAFDP---LDEIATVCEKYDLWMHVDACWGGSLIFSE--KYSF-VLKGINRA  155 (448)
Q Consensus        82 ~Le~~l~~~~~~~~~~~lVv~~~~~t~tG~~~~---l~~I~~ia~~~g~~l~VD~A~~~~~~~~~--~~~~-~~~~~~~a  155 (448)
                      +|++.+++.   ..+++++++++++|+||.+.+   +++|+++|++||+++++|++|+......+  .... ...+....
T Consensus       184 ~l~~~l~~~---~~~~~~v~i~~p~NPtG~~~~~~~l~~i~~~~~~~~~~li~De~y~~~~~~~~~~~~~~~~~~~~~~~  260 (420)
T 4f4e_A          184 GMLAALNGY---EPGTIVVLHACCHNPTGVDLNDAQWAQVVEVVKARRLVPFLDIAYQGFGESIEADAAAVRLFAAANLN  260 (420)
T ss_dssp             HHHHHHTTC---CTTCEEEEECSSCTTTCCCCCHHHHHHHHHHHHHHTCEEEEEESCTTSSSCTTGGGHHHHHHHHTTCC
T ss_pred             HHHHHHHhC---CCCCEEEEeCCCCCCCCCCCCHHHHHHHHHHHHHCCcEEEEccccccccCCcchhhHHHHHHHhcCCC
Confidence            999999642   235789999999999998844   77899999999999999999876554211  1110 11112234


Q ss_pred             cEEEECCccccCCC-CceEEEEE
Q psy14299        156 NSVSWNPHKMLGAP-LQCSILLI  177 (448)
Q Consensus       156 D~~~~s~hK~l~~P-~g~G~l~v  177 (448)
                      ++++.|++|.++.| ..+|++++
T Consensus       261 ~i~~~S~SK~~~~~G~RiG~~~~  283 (420)
T 4f4e_A          261 VFVSSSFSKSFSLYGERVGALSI  283 (420)
T ss_dssp             EEEEEECTTTTTCGGGCEEEEEE
T ss_pred             EEEEEeCCccCcCcCCCcEEEEE
Confidence            67888999998743 23777764

>3a8u_X Omega-amino acid--pyruvate aminotransferase; large pleated sheet, transaminase, pyridox phosphate; HET: PLP; 1.40A {Pseudomonas putida}

Probab=99.71  E-value=6.1e-15  Score=151.53  Aligned_cols=170  Identities=12%  Similarity=0.100  Sum_probs=105.8

Q ss_pred             cEEEeCcHHHHHHHHHHHHHHhcCCcccccCCCCCCCeEEEecCCCchHHHHHHHHhCCC---------CCcEEEEecCC
Q psy14299          4 KPFLLPGGSISNMYSICLARYRLDPDTKRKGLSHLPPLCMFTSEDSHYSMLKAAHWLGIG---------MDNVIRVKTNE   74 (448)
Q Consensus         4 ~g~~t~ggT~an~~al~~a~~~~~~~~~~~G~~~~~~~~Vl~~~~~H~s~~~~~~~~g~~---------~~~v~~v~~~~   74 (448)
                      .++||+|||+++..++.+++...    +.+|-+ ..+.+|+.+...|.+...++...|..         ...+..++.+.
T Consensus       112 ~v~~~~ggsea~~~al~~~~~~~----~~~g~~-~~~~vi~~~~~yhg~~~~~~~~~g~~~~~~~~~~~~~~~~~v~~~~  186 (449)
T 3a8u_X          112 HVFFTDSGSECALTAVKMVRAYW----RLKGQA-TKTKMIGRARGYHGVNIAGTSLGGVNGNRKLFGQPMQDVDHLPHTL  186 (449)
T ss_dssp             EEEEESSHHHHHHHHHHHHHHHH----HHTTCT-TCCEEEEETTCCCCSSHHHHHHCCCHHHHTTTCCCSCSEEEECCCC
T ss_pred             EEEEcCcHHHHHHHHHHHHHHHH----HhcCCC-CCCEEEEECCCcCCCChhhhhccCChhhccccCCCCCCCeEecCCc
Confidence            47899999999999988776421    111211 02334555677777766666655420         01245555432


Q ss_pred             CC-----CcC--------HHHHHHHHHHhhhcCCCcEEEEEeccCCccccccC----HHHHHHHHHHcCCEEEEecccc-
Q psy14299         75 RG-----QMI--------CSFLEQTIQTSLAEKKIPLFVNATAGTTVLGAFDP----LDEIATVCEKYDLWMHVDACWG-  136 (448)
Q Consensus        75 ~g-----~id--------~e~Le~~l~~~~~~~~~~~lVv~~~~~t~tG~~~~----l~~I~~ia~~~g~~l~VD~A~~-  136 (448)
                      ..     .+|        +++|+++|++..  ..++++|+++...+++|.+.|    +++|.++|++||+++++|++|. 
T Consensus       187 ~~~~~~~~~d~~~~~~~~~~~le~~l~~~~--~~~~~~vi~~p~~~~tG~~~~~~~~l~~l~~l~~~~~~~li~Dev~~~  264 (449)
T 3a8u_X          187 LASNAYSRGMPKEGGIALADELLKLIELHD--ASNIAAVFVEPLAGSAGVLVPPEGYLKRNREICNQHNILLVFDEVITG  264 (449)
T ss_dssp             CGGGTTCSSSCSSSHHHHHHHHHHHHHHHC--GGGEEEEEECSSBTTTTCBCCCTTHHHHHHHHHHHHTCEEEEECTTTT
T ss_pred             cccCccccCChHHHHHHHHHHHHHHHHhcC--CCCEEEEEEcCccCCCCCccCCHHHHHHHHHHHHHhCCEEEEeccccC
Confidence            21     246        999999997521  124677777777677999888    9999999999999999999995 


Q ss_pred             cccccccchhhhhcCCCCccEEEECCccccCCC-CceEEEEEeccchhhh
Q psy14299        137 GSLIFSEKYSFVLKGINRANSVSWNPHKMLGAP-LQCSILLIKEKGLLHQ  185 (448)
Q Consensus       137 ~~~~~~~~~~~~~~~~~~aD~~~~s~hK~l~~P-~g~G~l~vr~~~~~~~  185 (448)
                      .+... ........++ ..|++++  .|++++- ..+|++++++ ++...
T Consensus       265 ~g~~g-~~~~~~~~~~-~~di~s~--sK~l~~G~~~~G~~~~~~-~~~~~  309 (449)
T 3a8u_X          265 FGRTG-SMFGADSFGV-TPDLMCI--AKQVTNGAIPMGAVIAST-EIYQT  309 (449)
T ss_dssp             TTTTS-SSSHHHHHTC-CCSEEEE--CGGGGTTSSCCEEEEEEH-HHHHH
T ss_pred             ccccC-cchhhhhcCC-CCCEEEE--cccccCCCCceEEEEECH-HHHHH
Confidence            43221 1111111122 2577755  5998751 2288888765 44333

>2ay1_A Aroat, aromatic amino acid aminotransferase; HET: PLP AHC; 2.20A {Paracoccus denitrificans} SCOP: c.67.1.1 PDB: 1ay5_A* 1ay4_A* 1ay8_A* 2ay2_A* 2ay3_A* 2ay4_A* 2ay5_A* 2ay6_A* 2ay7_A* 2ay8_A* 2ay9_A*

Probab=99.70  E-value=6.7e-17  Score=162.77  Aligned_cols=156  Identities=17%  Similarity=0.102  Sum_probs=113.6

Q ss_pred             cEEE--eCcHHHHHHHHHHHHHHhcCCcccccCCCCCCCeEEEecCCCchHHHHHHHHhCCCCCcEEEEecC--CCCCcC
Q psy14299          4 KPFL--LPGGSISNMYSICLARYRLDPDTKRKGLSHLPPLCMFTSEDSHYSMLKAAHWLGIGMDNVIRVKTN--ERGQMI   79 (448)
Q Consensus         4 ~g~~--t~ggT~an~~al~~a~~~~~~~~~~~G~~~~~~~~Vl~~~~~H~s~~~~~~~~g~~~~~v~~v~~~--~~g~id   79 (448)
                      ..++  |+|||+|+..++..++..            .+++.|+++..+|.++...++..|.   +++.+|.+  +++.+|
T Consensus        91 ~v~~~~~~g~~~a~~~~~~~~~~~------------~~gd~vl~~~p~~~~~~~~~~~~g~---~~~~~~~~~~~~~~~d  155 (394)
T 2ay1_A           91 TTATLATVGGTGALRQALELARMA------------NPDLRVFVSDPTWPNHVSIMNFMGL---PVQTYRYFDAETRGVD  155 (394)
T ss_dssp             GEEEEEEEHHHHHHHHHHHHHHHH------------CTTCCEEEEESCCHHHHHHHHHHTC---CEEEEECEETTTTEEC
T ss_pred             cEEEEecCCchhHHHHHHHHHHhc------------CCCCEEEEcCCCChhHHHHHHHcCC---ceEEEecccccCCccC
Confidence            3567  999999999888776542            1455688888999999999999998   78888875  567899


Q ss_pred             HHHHHHHHHHhhhcCCCcEEEEEeccCCccccccC---HHHHHHHHHHcCCEEEEecccccccccc--cchhhh-hcCCC
Q psy14299         80 CSFLEQTIQTSLAEKKIPLFVNATAGTTVLGAFDP---LDEIATVCEKYDLWMHVDACWGGSLIFS--EKYSFV-LKGIN  153 (448)
Q Consensus        80 ~e~Le~~l~~~~~~~~~~~lVv~~~~~t~tG~~~~---l~~I~~ia~~~g~~l~VD~A~~~~~~~~--~~~~~~-~~~~~  153 (448)
                      +++|++++++.   ..+++++++++++|+||.+.|   +++|.++|++||+++++|++|+......  +..... +....
T Consensus       156 ~~~l~~~l~~~---~~~~~~~~~~~~~nptG~~~~~~~l~~i~~~~~~~~~~li~De~~~~~~~~~~~~~~~~~~~~~~~  232 (394)
T 2ay1_A          156 FEGMKADLAAA---KKGDMVLLHGCCHNPTGANLTLDQWAEIASILEKTGALPLIDLAYQGFGDGLEEDAAGTRLIASRI  232 (394)
T ss_dssp             HHHHHHHHHTC---CTTCEEEEESSSCTTTCCCCCHHHHHHHHHHHHHHTCEEEEEECCTTSSSCHHHHHHHHHHHHHHC
T ss_pred             HHHHHHHHHhC---CCCCEEEEeCCCCCCCCCCCCHHHHHHHHHHHHHCCCEEEEecCccccccCcccchHHHHHHhhcC
Confidence            99999999752   123577888999999998875   5678999999999999999998654311  000000 11111


Q ss_pred             CccEEEECCccccCCC-CceEEEEE
Q psy14299        154 RANSVSWNPHKMLGAP-LQCSILLI  177 (448)
Q Consensus       154 ~aD~~~~s~hK~l~~P-~g~G~l~v  177 (448)
                      .-.+++.+++|+++.| ..+|++++
T Consensus       233 ~~~i~~~s~sK~~~~~G~riG~~~~  257 (394)
T 2ay1_A          233 PEVLIAASCSKNFGIYRERTGCLLA  257 (394)
T ss_dssp             SSEEEEEECTTTTTCGGGCEEEEEE
T ss_pred             CCEEEEEeccCCCcCcCCccceEEE
Confidence            1235677899998743 22588877

>3tfu_A Adenosylmethionine-8-amino-7-oxononanoate aminotr; transferase, transferase-transferase inhibitor complex; HET: PL8; 1.94A {Mycobacterium tuberculosis} PDB: 3tft_A* 3bv0_A* 3lv2_A*

Probab=99.69  E-value=6.9e-15  Score=152.01  Aligned_cols=166  Identities=14%  Similarity=0.083  Sum_probs=103.8

Q ss_pred             cEEEeCcHHHHHHHHHHHHHHhcCCcccccCCCCCCCeEEEecCCCchHHHHHHHHhC-CC---------CCcEEEEecC
Q psy14299          4 KPFLLPGGSISNMYSICLARYRLDPDTKRKGLSHLPPLCMFTSEDSHYSMLKAAHWLG-IG---------MDNVIRVKTN   73 (448)
Q Consensus         4 ~g~~t~ggT~an~~al~~a~~~~~~~~~~~G~~~~~~~~Vl~~~~~H~s~~~~~~~~g-~~---------~~~v~~v~~~   73 (448)
                      .++||+|||+||..|+.+++...    ...|.+ ..+.+|..+...|.+...+....+ ..         ...+..++.+
T Consensus       137 ~v~~~~sGseA~~~Alk~a~~~~----~~~g~~-g~~~ii~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p  211 (457)
T 3tfu_A          137 TVFFSDSGSVSVEVAAKMALQYW----RGRGLP-GKRRLMTWRGGYHGDTFLAMSICDPHGGMHSLWTDVLAAQVFAPQV  211 (457)
T ss_dssp             EEEEESSHHHHHHHHHHHHHHHH----HHTTCT-TCCEEEEETTCCCCSSHHHHTTSCCC----------CCCCEEECCC
T ss_pred             EEEEeCcHHHHHHHHHHHHHHHH----HhcCCC-CCceEEEEcCCcCCccHHhhcccCCcccccccccCCCCCceEecCC
Confidence            47999999999999998887631    111211 133455556666665544443311 00         0023334432


Q ss_pred             C--CCCcCHHHHHHHHHHhhhcCCCcEEEEEec-cCCccccccC----HHHHHHHHHHcCCEEEEecccccccccccchh
Q psy14299         74 E--RGQMICSFLEQTIQTSLAEKKIPLFVNATA-GTTVLGAFDP----LDEIATVCEKYDLWMHVDACWGGSLIFSEKYS  146 (448)
Q Consensus        74 ~--~g~id~e~Le~~l~~~~~~~~~~~lVv~~~-~~t~tG~~~~----l~~I~~ia~~~g~~l~VD~A~~~~~~~~~~~~  146 (448)
                      .  ....|+++|+++|++.   +.++.+|++.. +.+++|.+.|    +++|.++|++||+++++|+++.+.......+.
T Consensus       212 ~~~~~~~d~~~le~~l~~~---~~~~aavi~ep~~~~~~G~~~~~~~~l~~l~~l~~~~gillI~DEv~~g~gr~G~~~a  288 (457)
T 3tfu_A          212 PRDYDPAYSAAFEAQLAQH---AGELAAVVVEPVVQGAGGMRFHDPRYLHDLRDICRRYEVLLIFDEIATGFGRTGALFA  288 (457)
T ss_dssp             CSSCCHHHHHHHHHHHHHH---GGGEEEEEECSSEECTTTCEECCTHHHHHHHHHHHHHTCEEEEECTTTTTTTTSSSST
T ss_pred             CcccCHHHHHHHHHHHHhC---CCCEEEEEEeCCCcCCCCcccCCHHHHHHHHHHHHHcCCEEEEEcCccCCccccchhH
Confidence            2  2235899999999752   12467888888 7888998876    99999999999999999999874321111111


Q ss_pred             hhhcCCCCccEEEECCccccCCCC-ceEEEEEecc
Q psy14299        147 FVLKGINRANSVSWNPHKMLGAPL-QCSILLIKEK  180 (448)
Q Consensus       147 ~~~~~~~~aD~~~~s~hK~l~~P~-g~G~l~vr~~  180 (448)
                      ....++ ..|++++  .|.+++.. ..|+++.+++
T Consensus       289 ~~~~~~-~pdiit~--sK~l~gG~~~lG~v~~~~~  320 (457)
T 3tfu_A          289 ADHAGV-SPDIMCV--GKALTGGYLSLAATLCTAD  320 (457)
T ss_dssp             HHHHTC-CCSEEEE--CGGGGTTSSCCEEEEEEHH
T ss_pred             hHhcCC-CceEEEE--ChhhhCCCcceEEEEEcHH
Confidence            111122 3677755  59888753 6788877664

>2cjg_A L-lysine-epsilon aminotransferase; internal aldimine, pyridoxal phosphate, PLP, RV3290C, lysine amino transferase; HET: PMP; 1.95A {Mycobacterium tuberculosis} PDB: 2cjd_A* 2cin_A* 2cjh_A* 2jjg_A* 2jje_A* 2jjh_A* 2jjf_A

Probab=99.69  E-value=1.7e-15  Score=156.11  Aligned_cols=166  Identities=10%  Similarity=0.038  Sum_probs=98.9

Q ss_pred             cEEEeCcHHHHHHHHHHHHHHhcCCcccccCCCCCCCeEEEecC-CCchHHHHHHHH--------hCCCC--CcEEEEec
Q psy14299          4 KPFLLPGGSISNMYSICLARYRLDPDTKRKGLSHLPPLCMFTSE-DSHYSMLKAAHW--------LGIGM--DNVIRVKT   72 (448)
Q Consensus         4 ~g~~t~ggT~an~~al~~a~~~~~~~~~~~G~~~~~~~~Vl~~~-~~H~s~~~~~~~--------~g~~~--~~v~~v~~   72 (448)
                      .++||+|||+||..++..++..........|.+..+++.|++.+ ..|.+...+...        .+...  ..+..+|.
T Consensus       121 ~v~~~~~gseA~~~aik~a~~~~~~~~~~~~~~~~~~~~Vi~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  200 (449)
T 2cjg_A          121 HLFFVEGGALAVENALKAAFDWKSRHNQAHGIDPALGTQVLHLRGAFHGRSGYTLSLTNTKPTITARFPKFDWPRIDAPY  200 (449)
T ss_dssp             EEEEESSHHHHHHHHHHHHHHHHHHHHHHTTSCTTCCCEEEEETTCCCCSSTTGGGTCCSCHHHHTTSCCCCCCEECCCC
T ss_pred             EEEEeCchHHHHHHHHHHHHHHhcccccccccccCCCCEEEEECCCcCCcccchhhhcCCchhhcccCCCCCCCcEEEcC
Confidence            58999999999999998776321000000111111144455554 555443322221        12210  13566666


Q ss_pred             CC--CC--------CcCHHHHHHHHHHhhhcCCCcEEEEEeccCCccccccC----HHHHHHHHHHcCCEEEEecccccc
Q psy14299         73 NE--RG--------QMICSFLEQTIQTSLAEKKIPLFVNATAGTTVLGAFDP----LDEIATVCEKYDLWMHVDACWGGS  138 (448)
Q Consensus        73 ~~--~g--------~id~e~Le~~l~~~~~~~~~~~lVv~~~~~t~tG~~~~----l~~I~~ia~~~g~~l~VD~A~~~~  138 (448)
                      ++  ..        ..++++|++++++.   +.++++|+++..++++|.+.+    +++|.++|++||+++++|++|++.
T Consensus       201 ~d~~~~~~~~~~~~~~~~~~le~~i~~~---~~~~~~vi~ep~~~~~G~~~~~~~~l~~l~~l~~~~g~lli~DEv~~g~  277 (449)
T 2cjg_A          201 MRPGLDEPAMAALEAEALRQARAAFETR---PHDIACFVAEPIQGEGGDRHFRPEFFAAMRELCDEFDALLIFDEVQTGC  277 (449)
T ss_dssp             CCTTCCHHHHHHHHHHHHHHHHHHHHHS---TTTEEEEEECSEETTTTCEECCHHHHHHHHHHHHHTTCEEEEECTTTTT
T ss_pred             CCchhhccccchhhHHHHHHHHHHHHhc---CCceEEEEEeCcCCCCCCccCCHHHHHHHHHHHHHCCcEEEEeccccCC
Confidence            54  11        25677798888641   235788888887788998777    999999999999999999999842


Q ss_pred             cccccchhhhhcCCCCccEEEECCccccCCCCceEEEEEec
Q psy14299        139 LIFSEKYSFVLKGINRANSVSWNPHKMLGAPLQCSILLIKE  179 (448)
Q Consensus       139 ~~~~~~~~~~~~~~~~aD~~~~s~hK~l~~P~g~G~l~vr~  179 (448)
                      ......+.....++ ..|+++++  |++  |  +|++++++
T Consensus       278 g~~g~~~~~~~~~~-~~di~t~s--K~l--~--iG~~~~~~  311 (449)
T 2cjg_A          278 GLTGTAWAYQQLDV-APDIVAFG--KKT--Q--VCGVMAGR  311 (449)
T ss_dssp             TTTSSSSTHHHHTC-CCSEEEEC--GGG--S--SEEEEECG
T ss_pred             CccCcceeecccCC-CceEEEec--Ccc--c--EEEEEECH
Confidence            11111111111123 35877664  988  5  67877765

>3gju_A Putative aminotransferase; pyridoxal phosphate, PLP-dependent transferase-like fold, ST genomics, joint center for structural genomics, JCSG; HET: MSE LLP PLP; 1.55A {Mesorhizobium loti} PDB: 3fcr_A*

Probab=99.69  E-value=3.1e-14  Score=146.98  Aligned_cols=167  Identities=17%  Similarity=0.141  Sum_probs=105.0

Q ss_pred             cEEEeCcHHHHHHHHHHHHHHhcCCcccccCCCCCCCeEEEecCCCchHHHHHHHHhCCC---------CCcEEEEecCC
Q psy14299          4 KPFLLPGGSISNMYSICLARYRLDPDTKRKGLSHLPPLCMFTSEDSHYSMLKAAHWLGIG---------MDNVIRVKTNE   74 (448)
Q Consensus         4 ~g~~t~ggT~an~~al~~a~~~~~~~~~~~G~~~~~~~~Vl~~~~~H~s~~~~~~~~g~~---------~~~v~~v~~~~   74 (448)
                      .++||+|||+||..++.+++...    ...|.+ ..+.+|......|.+...+....+..         ...+..++...
T Consensus       114 ~v~~~~gGseA~~~al~~~~~~~----~~~g~~-~~~~vi~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~  188 (460)
T 3gju_A          114 RVYFGLSGSDANETNIKLIWYYN----NVLGRP-EKKKIISRWRGYHGSGVMTGSLTGLDLFHNAFDLPRAPVLHTEAPY  188 (460)
T ss_dssp             EEEEESSHHHHHHHHHHHHHHHH----HHTTCT-TCCEEEEETTCCCCSSHHHHHHCCCGGGTTTTTCSCTTEEEECCCC
T ss_pred             EEEEeCchHHHHHHHHHHHHHHH----HhcCCC-CCCEEEEECCCcCCCCHHHhhccCCcccccccCCCCCCCEEeCCCc
Confidence            47899999999999999887631    111211 13445555667776666555543321         11355566432


Q ss_pred             -----CCCcC--------HHHHHHHHHHhhhcCCCcEEEEEeccCCccccccC----HHHHHHHHHHcCCEEEEeccccc
Q psy14299         75 -----RGQMI--------CSFLEQTIQTSLAEKKIPLFVNATAGTTVLGAFDP----LDEIATVCEKYDLWMHVDACWGG  137 (448)
Q Consensus        75 -----~g~id--------~e~Le~~l~~~~~~~~~~~lVv~~~~~t~tG~~~~----l~~I~~ia~~~g~~l~VD~A~~~  137 (448)
                           +..++        +++|++++++.  ...++.+|+++.+.+++|.+.+    +++|.++|++||+++++|++|.+
T Consensus       189 ~~~~~~~g~~~~~~~~~~~~~le~~i~~~--~~~~~aaii~ep~~~~~G~~~~~~~~l~~l~~l~~~~~~llI~DEv~~g  266 (460)
T 3gju_A          189 YFRRTDRSMSEEQFSQHCADKLEEMILAE--GPETIAAFIGEPILGTGGIVPPPAGYWEKIQAVLKKYDVLLVADEVVTG  266 (460)
T ss_dssp             GGGCSCTTCCHHHHHHHHHHHHHHHHHHH--CGGGEEEEEECSSBSTTTSBCCCTTHHHHHHHHHHHTTCEEEEECTTTT
T ss_pred             cccCCccccChhHHHHHHHHHHHHHHHhc--CCCCEEEEEECCccCCCCCccCCHHHHHHHHHHHHHcCCEEEEeccccC
Confidence                 11223        68899888742  1124678888888887888766    99999999999999999999884


Q ss_pred             ccccccchhhhhcCCCCccEEEECCccccCCC-CceEEEEEecc
Q psy14299        138 SLIFSEKYSFVLKGINRANSVSWNPHKMLGAP-LQCSILLIKEK  180 (448)
Q Consensus       138 ~~~~~~~~~~~~~~~~~aD~~~~s~hK~l~~P-~g~G~l~vr~~  180 (448)
                      .......+.....++ ..|+++++  |.+++. ..+|+++.+++
T Consensus       267 ~gr~g~~~~~~~~~~-~pdi~t~s--K~l~gG~~~lg~v~~~~~  307 (460)
T 3gju_A          267 FGRLGTMFGSDHYGI-KPDLITIA--KGLTSAYAPLSGVIVADR  307 (460)
T ss_dssp             TTTTSSSCHHHHHTC-CCSEEEEC--GGGTTTSSCCEEEEEEHH
T ss_pred             CCcccccchHhhcCC-CCCeeeee--hhhcCCCCCeEEEEECHH
Confidence            321111111111233 35777764  998875 36788777654

>3meb_A Aspartate aminotransferase; pyridoxal PHOS transferase, structural genomics, seattle structural genomi for infectious disease, ssgcid; HET: PLP; 1.90A {Giardia lamblia}

Probab=99.68  E-value=8.2e-16  Score=158.36  Aligned_cols=154  Identities=11%  Similarity=0.036  Sum_probs=110.4

Q ss_pred             cEEE--eCcHHHHHHHHHHHHHHhcCCcccccCCCCCCCeEEEecCCCchHHHHHHH----HhCCCCCcEEEEec-CCC-
Q psy14299          4 KPFL--LPGGSISNMYSICLARYRLDPDTKRKGLSHLPPLCMFTSEDSHYSMLKAAH----WLGIGMDNVIRVKT-NER-   75 (448)
Q Consensus         4 ~g~~--t~ggT~an~~al~~a~~~~~~~~~~~G~~~~~~~~Vl~~~~~H~s~~~~~~----~~g~~~~~v~~v~~-~~~-   75 (448)
                      ..++  |+|||+|+.+++......            .+++.|+++...|.++...++    ..|.   +++.+|. +++ 
T Consensus       119 ~i~~~~t~ggt~al~l~~~~~~~~------------~~gd~Vlv~~p~~~~~~~~~~~~~~~~G~---~v~~~~~~~~~~  183 (448)
T 3meb_A          119 RIASCQSLSGTGSLHIGFEFLHLW------------MPKAEFYMPSTTWPNHYGIYDKVFNKLKV---PYKEYTYLRKDG  183 (448)
T ss_dssp             CEEEEEESHHHHHHHHHHHHHHHH------------CTTCCEEEESSCCTHHHHHHHHHHCTTTS---CCEEECCBCTTS
T ss_pred             cEEEEECCcHHHHHHHHHHHHHHh------------CCCCEEEECCCCCHhHHHHHHhhHHhCCC---eEEEEecccccc
Confidence            4677  999999987654322211            156679999999999999998    7887   7888888 654 


Q ss_pred             -CCcCHHHHHHHHHHhhhcCCCcEEEEEeccCCccccccC---HHHHHHHHHHcCCEEEEecccccccccc---cchhhh
Q psy14299         76 -GQMICSFLEQTIQTSLAEKKIPLFVNATAGTTVLGAFDP---LDEIATVCEKYDLWMHVDACWGGSLIFS---EKYSFV  148 (448)
Q Consensus        76 -g~id~e~Le~~l~~~~~~~~~~~lVv~~~~~t~tG~~~~---l~~I~~ia~~~g~~l~VD~A~~~~~~~~---~~~~~~  148 (448)
                       +.+|+++|++++++.   ..+++++++.+++|+||...+   +++|+++|++||+++++|++|.......   +.....
T Consensus       184 ~~~~d~e~l~~~l~~~---~~~~~~v~~~~p~NPtG~~~~~~~l~~i~~l~~~~~~~li~Deay~~~~~~~~~~~~~~~~  260 (448)
T 3meb_A          184 ELEIDFSNTKKDIQSA---PEKSIFLFHACAHNPSGIDFTEAQWKELLPIMKEKKHIAFFDSAYQGFATGSFEADAFAVR  260 (448)
T ss_dssp             CSSBCHHHHHHHHHHS---CTTCEEEEESSSCTTTCCCCCHHHHHHHHHHHHHHTCEEEEEESCTTTSSSCHHHHTHHHH
T ss_pred             CCCcCHHHHHHHHHhC---CCCcEEEEeCCCCCCCCcCCCHHHHHHHHHHHHHCCCEEEEecccccccCCCcccCchhHH
Confidence             799999999999752   224678888999999998876   5559999999999999999987654321   111110


Q ss_pred             -hcCCCCccEEEECCccccCCCC-ceEEE
Q psy14299        149 -LKGINRANSVSWNPHKMLGAPL-QCSIL  175 (448)
Q Consensus       149 -~~~~~~aD~~~~s~hK~l~~P~-g~G~l  175 (448)
                       +.....-.+++.|++|.++.|. .+|++
T Consensus       261 ~~~~~~~~~i~~~S~SK~~g~~G~RiG~l  289 (448)
T 3meb_A          261 MFVDAGVEVLVAQSFSKNFGLYGERIGCL  289 (448)
T ss_dssp             HHHHTTCCEEEEEECTTTSCCGGGCCEEE
T ss_pred             HHhhcCCcEEEEecccccCCCccccceee
Confidence             1011112366789999987542 26665

>3dod_A Adenosylmethionine-8-amino-7-oxononanoate aminotr; aminotransferase, biotin biosynthesis, pyridoxal phosphate, adenosyl-L-methionine; HET: PLP; 1.90A {Bacillus subtilis} SCOP: c.67.1.0 PDB: 3drd_A 3du4_A*

Probab=99.68  E-value=2.5e-14  Score=147.14  Aligned_cols=166  Identities=13%  Similarity=0.076  Sum_probs=93.7

Q ss_pred             cEEEeCcHHHHHHHHHHHHHHhcCCcccccCCCCCCCeEEEecCCCchHHHHHHHHhCCC---------CCcEEEEecCC
Q psy14299          4 KPFLLPGGSISNMYSICLARYRLDPDTKRKGLSHLPPLCMFTSEDSHYSMLKAAHWLGIG---------MDNVIRVKTNE   74 (448)
Q Consensus         4 ~g~~t~ggT~an~~al~~a~~~~~~~~~~~G~~~~~~~~Vl~~~~~H~s~~~~~~~~g~~---------~~~v~~v~~~~   74 (448)
                      .++||+|||+||..|+.+++....    ..|.+ ..+.+|+.+...|.+...+....+..         ...+..+|.+.
T Consensus       106 ~v~~~~sGseA~~~al~~~~~~~~----~~G~~-~~~~vi~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  180 (448)
T 3dod_A          106 RVFYSDSGAEAMEIALKMAFQYWK----NIGKP-EKQKFIAMKNGYHGDTIGAVSVGSIELFHHVYGPLMFESYKAPIPY  180 (448)
T ss_dssp             EEEEESSHHHHHHHHHHHHHHHHH----HTTCT-TCCEEEEEC-----------------------------CEEECCCC
T ss_pred             EEEEeCchHHHHHHHHHHHHHHHH----hhCCC-CCCEEEEECCCCCCccHHHHHhcCCccccccccCCCCCceEeCCCc
Confidence            579999999999999998886310    01111 02334444455555544443333321         01244555544


Q ss_pred             CCCc-----------CHHHHHHHHHHhhhcCCCcEEEEEeccC-CccccccC----HHHHHHHHHHcCCEEEEecccccc
Q psy14299         75 RGQM-----------ICSFLEQTIQTSLAEKKIPLFVNATAGT-TVLGAFDP----LDEIATVCEKYDLWMHVDACWGGS  138 (448)
Q Consensus        75 ~g~i-----------d~e~Le~~l~~~~~~~~~~~lVv~~~~~-t~tG~~~~----l~~I~~ia~~~g~~l~VD~A~~~~  138 (448)
                      ..+.           |+++|+++|+..   ..++.+|++.... +++|.+.|    +++|.++|++||+++++|++|.+.
T Consensus       181 ~~~~~~~~~~~~~~~d~~~le~~l~~~---~~~~a~vi~ep~~~~~~G~~~~~~~~l~~l~~l~~~~~~~lI~DEv~~g~  257 (448)
T 3dod_A          181 VYRSESGDPDECRDQCLRELAQLLEEH---HEEIAALSIESMVQGASGMIVMPEGYLAGVRELCTTYDVLMIVDEVATGF  257 (448)
T ss_dssp             CTTSSSCCHHHHHHHHHHHHHHHHHHH---GGGEEEEEEESSEESTTTCEECCTTHHHHHHHHHHHTTCEEEEECTTTTT
T ss_pred             cccCCccchhhhhHHHHHHHHHHHHhC---CCCEEEEEEeCcccCCCCeecCCHHHHHHHHHHHHHhCCEEEEeccccCC
Confidence            3332           489999999732   1245677777776 77887766    999999999999999999998742


Q ss_pred             cccccchhhhhcCCCCccEEEECCccccCCCC-ceEEEEEecc
Q psy14299        139 LIFSEKYSFVLKGINRANSVSWNPHKMLGAPL-QCSILLIKEK  180 (448)
Q Consensus       139 ~~~~~~~~~~~~~~~~aD~~~~s~hK~l~~P~-g~G~l~vr~~  180 (448)
                      ......+.....++ ..|+++++  |.+++.. .+|+++.+++
T Consensus       258 g~~g~~~a~~~~~~-~~di~t~s--K~l~~G~~~ig~v~~~~~  297 (448)
T 3dod_A          258 GRTGKMFACEHENV-QPDLMAAG--KGITGGYLPIAVTFATED  297 (448)
T ss_dssp             TTTSSSSGGGGGTC-CCSEEEEC--GGGGTTSSCCEEEEEEHH
T ss_pred             CcccchhhhhhcCC-CCCEEEec--ccccCCcCceEEEEECHH
Confidence            21111111111222 25777764  9987653 6788777654

>1zod_A DGD, 2,2-dialkylglycine decarboxylase; pyridoxal, cesium, lyase; HET: MES PLP; 1.80A {Burkholderia cepacia} SCOP: c.67.1.4 PDB: 1dka_A* 1m0o_A* 1m0p_A* 1m0n_A* 1zc9_A* 1zob_A* 1m0q_A* 2dkb_A* 1dgd_A* 1dge_A* 1d7u_A* 1d7s_A* 1d7r_A* 1d7v_A* 1z3z_A*

Probab=99.68  E-value=4.7e-15  Score=151.44  Aligned_cols=160  Identities=14%  Similarity=0.061  Sum_probs=102.0

Q ss_pred             cEEEeCcHHHHHHHHHHHHHHhcCCcccccCCCCCCCeEEEecCCCchHHHHHHHHhCC--------CCCcEEEEecCCC
Q psy14299          4 KPFLLPGGSISNMYSICLARYRLDPDTKRKGLSHLPPLCMFTSEDSHYSMLKAAHWLGI--------GMDNVIRVKTNER   75 (448)
Q Consensus         4 ~g~~t~ggT~an~~al~~a~~~~~~~~~~~G~~~~~~~~Vl~~~~~H~s~~~~~~~~g~--------~~~~v~~v~~~~~   75 (448)
                      .++||+|||++|..++..++..-           ..+.+|+.+...|.+...+....+.        ....+..++.+..
T Consensus       104 ~v~~~~gg~ea~~~a~~~~~~~~-----------~~~~vi~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~  172 (433)
T 1zod_A          104 RALLLSTGAESNEAAIRMAKLVT-----------GKYEIVGFAQSWHGMTGAAASATYSAGRKGVGPAAVGSFAIPAPFT  172 (433)
T ss_dssp             EEEEESCHHHHHHHHHHHHHHHH-----------TCCEEEEETTCCCCSSHHHHHTCCSSCCSSSCCCCTTEEEECCCCT
T ss_pred             EEEEeCchHHHHHHHHHHHHHhh-----------CCCeEEEECCCcCCCChhHHhhcCCccccccCCCCCCceEecCCcc
Confidence            57899999999999998776420           1234555566677666555443221        0113555554321


Q ss_pred             ------------CCcCHHHHHHHHHHhhhcCCCcEEEEEeccCCccccccC----HHHHHHHHHHcCCEEEEeccccccc
Q psy14299         76 ------------GQMICSFLEQTIQTSLAEKKIPLFVNATAGTTVLGAFDP----LDEIATVCEKYDLWMHVDACWGGSL  139 (448)
Q Consensus        76 ------------g~id~e~Le~~l~~~~~~~~~~~lVv~~~~~t~tG~~~~----l~~I~~ia~~~g~~l~VD~A~~~~~  139 (448)
                                  +.+|+++|++++++.  ...++++|+++...+++|.+.|    +++|.++|++||+++++|++|+...
T Consensus       173 ~~~~~~~~~~~~~~~d~~~le~~l~~~--~~~~~~~vi~~p~~~~~G~~~~~~~~l~~l~~l~~~~~~~li~DEv~~~~g  250 (433)
T 1zod_A          173 YRPRFERNGAYDYLAELDYAFDLIDRQ--SSGNLAAFIAEPILSSGGIIELPDGYMAALKRKCEARGMLLILDEAQTGVG  250 (433)
T ss_dssp             TSCCCEETTEECHHHHHHHHHHHHHHH--CCSCEEEEEECSEETTTTCEECCTTHHHHHHHHHHHHTCEEEEECTTTTTT
T ss_pred             cccccCCchhhhHHHHHHHHHHHHHhc--CCCCeEEEEEccccCCCCcccCCHHHHHHHHHHHHHhCCEEEEeccccCCC
Confidence                        135799999999752  1124667777666677897766    9999999999999999999998422


Q ss_pred             ccccchhhhhcCCCCccEEEECCccccCCCCceEEEEEec
Q psy14299        140 IFSEKYSFVLKGINRANSVSWNPHKMLGAPLQCSILLIKE  179 (448)
Q Consensus       140 ~~~~~~~~~~~~~~~aD~~~~s~hK~l~~P~g~G~l~vr~  179 (448)
                      ...........++ ..|++++  .|+++++..+|++++++
T Consensus       251 ~~g~~~~~~~~~~-~~di~s~--sK~~~~G~~ig~~~~~~  287 (433)
T 1zod_A          251 RTGTMFACQRDGV-TPDILTL--SKTLGAGLPLAAIVTSA  287 (433)
T ss_dssp             TTSSSSTHHHHTC-CCSEEEE--CHHHHTTSSCEEEEECH
T ss_pred             cCchHhHHhhcCC-CCCEEEe--cccccCCCCeeEEEEhH
Confidence            1111111111122 2576655  59888766789988865

>2q7w_A Aspartate aminotransferase; mechanism-based inhibitor, PLP, sadta, PH dependence; HET: KST PSZ PMP GOL; 1.40A {Escherichia coli} SCOP: c.67.1.1 PDB: 2qa3_A* 2qb2_A* 2qb3_A* 2qbt_A* 3qn6_A* 3pa9_A* 1aaw_A* 1amq_A* 1ams_A* 1arg_A* 1amr_A* 1art_A* 1asa_A* 1asd_A* 1ase_A* 1asl_A* 1asm_A* 1asn_A* 1c9c_A* 1cq6_A* ...

Probab=99.67  E-value=4.7e-16  Score=156.50  Aligned_cols=154  Identities=10%  Similarity=0.011  Sum_probs=114.0

Q ss_pred             EEE--eCcHHHHHHHHHHHHHHhcCCcccccCCCCCCCeEEEecCCCchHHHHHHHHhCCCCCcEEEEecC--CCCCcCH
Q psy14299          5 PFL--LPGGSISNMYSICLARYRLDPDTKRKGLSHLPPLCMFTSEDSHYSMLKAAHWLGIGMDNVIRVKTN--ERGQMIC   80 (448)
Q Consensus         5 g~~--t~ggT~an~~al~~a~~~~~~~~~~~G~~~~~~~~Vl~~~~~H~s~~~~~~~~g~~~~~v~~v~~~--~~g~id~   80 (448)
                      .++  |+|||+++..++..++..            .+++.|+++..+|.++...++..|.   +++.+|.+  +++.+|+
T Consensus        95 v~~~~~~g~~~a~~~~~~~~~~~------------~~gd~Vl~~~p~y~~~~~~~~~~g~---~~~~~~~~~~~~~~~d~  159 (396)
T 2q7w_A           95 ARTAQTPGGTGALRVAADFLAKN------------TSVKRVWVSNPSWPNHKSVFNSAGL---EVREYAYYDAENHTLDF  159 (396)
T ss_dssp             EEEEEESHHHHHHHHHHHHHHHH------------SCCCEEEEEESCCTHHHHHHHHTTC---EEEEEECEETTTTEECH
T ss_pred             EEEEecccchhhHHHHHHHHHHh------------CCCCEEEEcCCCchhHHHHHHHcCC---ceEEEecccCCCCCcCH
Confidence            556  999999998888765532            1566788899999999999999888   78888885  5788999


Q ss_pred             HHHHHHHHHhhhcCCCcEEEEEeccCCccccccC---HHHHHHHHHHcCCEEEEecccccccccc--cchhhh-hcCCCC
Q psy14299         81 SFLEQTIQTSLAEKKIPLFVNATAGTTVLGAFDP---LDEIATVCEKYDLWMHVDACWGGSLIFS--EKYSFV-LKGINR  154 (448)
Q Consensus        81 e~Le~~l~~~~~~~~~~~lVv~~~~~t~tG~~~~---l~~I~~ia~~~g~~l~VD~A~~~~~~~~--~~~~~~-~~~~~~  154 (448)
                      ++|++++++.   ..+++++++++++|+||.+.|   +++|.++|++||+++++|++|+......  +..... +.....
T Consensus       160 ~~l~~~l~~~---~~~~~~v~~~~p~nptG~~~~~~~l~~l~~~~~~~~~~li~De~~~~~~~~~~~~~~~~~~~~~~~~  236 (396)
T 2q7w_A          160 DALINSLNEA---QAGDVVLFHGCCHNPTGIDPTLEQWQTLAQLSVEKGWLPLFDFAYQGFARGLEEDAEGLRAFAAMHK  236 (396)
T ss_dssp             HHHHHHHTTC---CTTCEEEEECSSCTTTCCCCCHHHHHHHHHHHHHHTCEEEEEESCTTSSSCHHHHTHHHHHHHHHCS
T ss_pred             HHHHHHHHhC---CCCCEEEEeCCCCCCCCCCCCHHHHHHHHHHHHHCCCEEEEecccccccCCccchhHHHHHHHhcCC
Confidence            9999999642   124678888999999998865   6689999999999999999988654311  000100 111112


Q ss_pred             ccEEEECCccccCCCCc--eEEEEE
Q psy14299        155 ANSVSWNPHKMLGAPLQ--CSILLI  177 (448)
Q Consensus       155 aD~~~~s~hK~l~~P~g--~G~l~v  177 (448)
                      .++++.+++|+++. .|  +|++++
T Consensus       237 ~~i~~~s~sK~~~~-~G~riG~~~~  260 (396)
T 2q7w_A          237 ELIVASSYSXNFGL-YNERVGACTL  260 (396)
T ss_dssp             CEEEEEECTTTTTC-GGGCCEEEEE
T ss_pred             cEEEEEeccccccc-cccccceEEE
Confidence            34778899998863 45  688876

>3nmy_A Xometc, cystathionine gamma-lyase-like protein; Cys-Met metabolism PLP-dependent enzyme family, CYST gamma lyase, pyridoxal-phosphate; HET: PLP; 2.07A {Xanthomonas oryzae PV} SCOP: c.67.1.0 PDB: 3e6g_A* 3nnp_A*

Probab=99.67  E-value=5.7e-15  Score=150.10  Aligned_cols=143  Identities=14%  Similarity=0.094  Sum_probs=108.0

Q ss_pred             cEEEeCcHHHHHHHHHHHHHHhcCCcccccCCCCCCCeEEEecCCCchHHHHHHHH-----hCCCCCcEEEEecCCCCCc
Q psy14299          4 KPFLLPGGSISNMYSICLARYRLDPDTKRKGLSHLPPLCMFTSEDSHYSMLKAAHW-----LGIGMDNVIRVKTNERGQM   78 (448)
Q Consensus         4 ~g~~t~ggT~an~~al~~a~~~~~~~~~~~G~~~~~~~~Vl~~~~~H~s~~~~~~~-----~g~~~~~v~~v~~~~~g~i   78 (448)
                      .++++++|++|+..+ ....              .+++.|+++...|.+....+..     .|+   +++.++.+     
T Consensus        84 ~~~~~~sG~~Ai~~~-~~l~--------------~~gd~Vi~~~~~y~~~~~~~~~~~~~~~g~---~~~~v~~~-----  140 (400)
T 3nmy_A           84 RAFAFASGMAATSTV-MELL--------------DAGSHVVAMDDLYGGTFRLFERVRRRTAGL---DFSFVDLT-----  140 (400)
T ss_dssp             EEEEESSHHHHHHHH-HTTS--------------CTTCEEEEESSCCHHHHHHHHHTHHHHHCC---EEEEECTT-----
T ss_pred             CEEEecCHHHHHHHH-HHHc--------------CCCCEEEEeCCCchHHHHHHHHhhHhhcCe---EEEEECCC-----
Confidence            468889998887653 2211              2567788899999876655433     477   78888875     


Q ss_pred             CHHHHHHHHHHhhhcCCCcEEEEEeccCCccccccCHHHHHHHHHHcCCEEEEecccccccccccchhhhhcCCCCccEE
Q psy14299         79 ICSFLEQTIQTSLAEKKIPLFVNATAGTTVLGAFDPLDEIATVCEKYDLWMHVDACWGGSLIFSEKYSFVLKGINRANSV  158 (448)
Q Consensus        79 d~e~Le~~l~~~~~~~~~~~lVv~~~~~t~tG~~~~l~~I~~ia~~~g~~l~VD~A~~~~~~~~~~~~~~~~~~~~aD~~  158 (448)
                      |+++|++++++      ++++|++..++|++|.+.|+++|.++|++||+++++|++|+.+....+. .     . ++|++
T Consensus       141 d~~~l~~~i~~------~~~~v~~e~~~np~G~~~~l~~i~~la~~~g~~livDe~~~~~~~~~~~-~-----~-g~div  207 (400)
T 3nmy_A          141 DPAAFKAAIRA------DTKMVWIETPTNPMLKLVDIAAIAVIARKHGLLTVVDNTFASPMLQRPL-S-----L-GADLV  207 (400)
T ss_dssp             SHHHHHHHCCT------TEEEEEEESSCTTTCCCCCHHHHHHHHHHTTCEEEEECTTTHHHHCCGG-G-----G-TCSEE
T ss_pred             CHHHHHHHhcc------CCCEEEEECCCCCCCeeecHHHHHHHHHHcCCEEEEECCCcccccCChh-h-----c-CCcEE
Confidence            89999999864      5889999999999999999999999999999999999999865442211 1     1 47999


Q ss_pred             EECCccccCCCC-c-eE-EEEEeccch
Q psy14299        159 SWNPHKMLGAPL-Q-CS-ILLIKEKGL  182 (448)
Q Consensus       159 ~~s~hK~l~~P~-g-~G-~l~vr~~~~  182 (448)
                      +.|++|++++|. . .| +++++++++
T Consensus       208 ~~S~sK~l~g~g~~~gG~~vv~~~~~~  234 (400)
T 3nmy_A          208 VHSATKYLNGHSDMVGGIAVVGDNAEL  234 (400)
T ss_dssp             EEETTTTTTCSSSCCCEEEEECSCHHH
T ss_pred             EecCccccCCCCCcceeEEEEeCCHHH
Confidence            999999999883 2 34 344445443

>7aat_A Aspartate aminotransferase; transferase(aminotransferase); HET: PLP; 1.90A {Gallus gallus} SCOP: c.67.1.1 PDB: 1ivr_A* 1map_A* 1maq_A* 1oxo_A* 1oxp_A* 1ama_A* 1tas_A* 1tat_A* 1tar_A* 8aat_A* 9aat_A* 1aka_A* 1akb_A* 1akc_A* 3pd6_A* 3hlm_A* 3pdb_A*

Probab=99.67  E-value=5.1e-16  Score=156.78  Aligned_cols=156  Identities=10%  Similarity=0.005  Sum_probs=115.5

Q ss_pred             EEE--eCcHHHHHHHHHHHHHHhcCCcccccCCCCCCCeEEEecCCCchHHHHHHHHhCCCCCcEEEEecC--CCCCcCH
Q psy14299          5 PFL--LPGGSISNMYSICLARYRLDPDTKRKGLSHLPPLCMFTSEDSHYSMLKAAHWLGIGMDNVIRVKTN--ERGQMIC   80 (448)
Q Consensus         5 g~~--t~ggT~an~~al~~a~~~~~~~~~~~G~~~~~~~~Vl~~~~~H~s~~~~~~~~g~~~~~v~~v~~~--~~g~id~   80 (448)
                      .++  |+|||+++.+++...+...           .+++.|+++...|.++...++..|.   +++.+|.+  .++.+|+
T Consensus        97 i~~v~t~G~~~al~~~~~~l~~~~-----------~~gd~Vlv~~p~~~~~~~~~~~~g~---~~~~~~~~~~~~~~~d~  162 (401)
T 7aat_A           97 YVTVQGISGTGSLRVGANFLQRFF-----------KFSRDVYLPKPSWGNHTPIFRDAGL---QLQAYRYYDPKTCSLDF  162 (401)
T ss_dssp             EEEEEEEHHHHHHHHHHHHHHHHC-----------TTCCEEEEEESCCTTHHHHHHHTTC---EEEEEECEETTTTEECH
T ss_pred             eEEEecCcchHHHHHHHHHHHHhc-----------cCCCEEEEcCCCchhHHHHHHHcCC---eeEeeeeeccccCccCH
Confidence            445  9999999998876655321           2567899999999999999999998   78888874  3689999


Q ss_pred             HHHHHHHHHhhhcCCCcEEEEEeccCCccccc---cCHHHHHHHHHHcCCEEEEecccccccccc---cchhh-hhcCCC
Q psy14299         81 SFLEQTIQTSLAEKKIPLFVNATAGTTVLGAF---DPLDEIATVCEKYDLWMHVDACWGGSLIFS---EKYSF-VLKGIN  153 (448)
Q Consensus        81 e~Le~~l~~~~~~~~~~~lVv~~~~~t~tG~~---~~l~~I~~ia~~~g~~l~VD~A~~~~~~~~---~~~~~-~~~~~~  153 (448)
                      +++++.+++.   ..+++++++++++|+||.+   +++++|+++|++||+++++|.+|.......   +.... ......
T Consensus       163 ~~l~~~l~~~---~~~~~~v~i~~p~NPtG~~~~~~~l~~i~~~~~~~~~~li~Deay~~~~~~~~~~~~~~~~~~~~~~  239 (401)
T 7aat_A          163 TGAMEDISKI---PEKSIILLHACAHNPTGVDPRQEQWKELASVVKKRNLLAYFDMAYQGFASGDINRDAWALRHFIEQG  239 (401)
T ss_dssp             HHHHHHHTTS---CTTCEEEEESSSCTTTCCCCCHHHHHHHHHHHHHTTCEEEEEESCTTTTTSCHHHHTHHHHHHHHTT
T ss_pred             HHHHHHHHhC---CCCcEEEEeCCCCCCCCCCCCHHHHHHHHHHHHhCCcEEEEccccccccCCCccccHHHHHHHHhcC
Confidence            9999988651   2357899999999999965   458889999999999999999987654321   11110 001112


Q ss_pred             CccEEEECCccccCCCC-ceEEEEE
Q psy14299        154 RANSVSWNPHKMLGAPL-QCSILLI  177 (448)
Q Consensus       154 ~aD~~~~s~hK~l~~P~-g~G~l~v  177 (448)
                      .-.+++.+++|.++.|. .+|++++
T Consensus       240 ~~~i~~~S~sK~~~~~G~RiG~l~~  264 (401)
T 7aat_A          240 IDVVLSQSYAKNMGLYGERAGAFTV  264 (401)
T ss_dssp             CCCEEEEECTTTSCCGGGCEEEEEE
T ss_pred             CcEEEEecCCcccccccCceEEEEE
Confidence            23578899999987442 2677775

>4a6r_A Omega transaminase; transferase, PLP-binding enzyme, transaminase fold type I; HET: TA8; 1.35A {Chromobacterium violaceum} PDB: 4a6t_A* 4a6u_A 4a72_A* 4ah3_A*

Probab=99.66  E-value=3.9e-14  Score=146.20  Aligned_cols=166  Identities=18%  Similarity=0.161  Sum_probs=103.0

Q ss_pred             cEEEeCcHHHHHHHHHHHHHHhcCCcccccCCCCCCCeEEEecCCCchHHHHHHHHhCCCC---------CcEEEEecCC
Q psy14299          4 KPFLLPGGSISNMYSICLARYRLDPDTKRKGLSHLPPLCMFTSEDSHYSMLKAAHWLGIGM---------DNVIRVKTNE   74 (448)
Q Consensus         4 ~g~~t~ggT~an~~al~~a~~~~~~~~~~~G~~~~~~~~Vl~~~~~H~s~~~~~~~~g~~~---------~~v~~v~~~~   74 (448)
                      .++||+|||++|..++.+++...    ...|.+ ..+.+|......|.....+....+...         ..+..++.+.
T Consensus       113 ~v~~~~ggseA~~~al~~~~~~~----~~~g~~-~~~~vi~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~  187 (459)
T 4a6r_A          113 RVFYTNSGSESVDTMIRMVRRYW----DVQGKP-EKKTLIGRWNGYHGSTIGGASLGGMKYMHEQGDLPIPGMAHIEQPW  187 (459)
T ss_dssp             EEEEESSHHHHHHHHHHHHHHHH----HHTTCT-TCCEEEEETTCCCCSSHHHHHHSCCTTTC---CCSCSSEEEECCCC
T ss_pred             EEEEeCchHHHHHHHHHHHHHHH----HhcCCC-CCCEEEEECCCcCCccHHHHhhcCChhhccccCCCCCCCEEeCCCc
Confidence            57999999999999999888631    111211 123445556666655554444433211         1244455322


Q ss_pred             -----CCCcC--------HHHHHHHHHHhhhcCCCcEEEEEeccCCccccccC----HHHHHHHHHHcCCEEEEeccccc
Q psy14299         75 -----RGQMI--------CSFLEQTIQTSLAEKKIPLFVNATAGTTVLGAFDP----LDEIATVCEKYDLWMHVDACWGG  137 (448)
Q Consensus        75 -----~g~id--------~e~Le~~l~~~~~~~~~~~lVv~~~~~t~tG~~~~----l~~I~~ia~~~g~~l~VD~A~~~  137 (448)
                           +. +|        +++|++++.+..  ..++.+|+++...+++|.+.|    +++|.++|++||+++++|++|.+
T Consensus       188 ~~~~~~~-~d~~~~~~~~~~~le~~i~~~~--~~~~~~vi~ep~~~~~G~~~~~~~~l~~l~~l~~~~~~llI~DEv~~g  264 (459)
T 4a6r_A          188 WYKHGKD-MTPDEFGVVAARWLEEKILEIG--ADKVAAFVGEPIQGAGGVIVPPATYWPEIERICRKYDVLLVADEVICG  264 (459)
T ss_dssp             HHHHCTT-CCHHHHHHHHHHHHHHHHHHHC--GGGEEEEEECSSBTTTTCBCCCTTHHHHHHHHHHHTTCEEEEECTTTT
T ss_pred             cccCCcc-cCHHHHHHHHHHHHHHHHHHcC--CCCEEEEEECCccCCCCcccCCHHHHHHHHHHHHHcCCEEEEeccccC
Confidence                 11 45        788998886421  124667777777777888887    99999999999999999999874


Q ss_pred             ccccccchhhhhcCCCCccEEEECCccccCCC-CceEEEEEecc
Q psy14299        138 SLIFSEKYSFVLKGINRANSVSWNPHKMLGAP-LQCSILLIKEK  180 (448)
Q Consensus       138 ~~~~~~~~~~~~~~~~~aD~~~~s~hK~l~~P-~g~G~l~vr~~  180 (448)
                      .......+.....++ ..|+++++  |.+++. ..+|+++.+++
T Consensus       265 ~gr~G~~~~~~~~~~-~pdi~t~s--K~l~gg~~~lg~v~~~~~  305 (459)
T 4a6r_A          265 FGRTGEWFGHQHFGF-QPDLFTAA--KGLSSGYLPIGAVFVGKR  305 (459)
T ss_dssp             TTTTSSSSHHHHHTC-CCSEEEEC--GGGGTTSSCCEEEEECHH
T ss_pred             CCcccccchHhhcCC-CCCeeehh--hhhcCCCCCccceeeCHH
Confidence            311111111111223 35788765  988765 46788777543

>3l44_A Glutamate-1-semialdehyde 2,1-aminomutase 1; alpha beta class, PLP-dependent transferase-like, bacillus A csgid, porphyrin biosynthesis; HET: LLP; 2.05A {Bacillus anthracis} SCOP: c.67.1.0

Probab=99.66  E-value=4.6e-15  Score=151.68  Aligned_cols=153  Identities=17%  Similarity=0.072  Sum_probs=98.5

Q ss_pred             cEEEeCcHHHHHHHHHHHHHHhcCCcccccCCCCCCCeEEEecCCCchHHHHHHHHhCCCC----------------CcE
Q psy14299          4 KPFLLPGGSISNMYSICLARYRLDPDTKRKGLSHLPPLCMFTSEDSHYSMLKAAHWLGIGM----------------DNV   67 (448)
Q Consensus         4 ~g~~t~ggT~an~~al~~a~~~~~~~~~~~G~~~~~~~~Vl~~~~~H~s~~~~~~~~g~~~----------------~~v   67 (448)
                      .++||+|||++|..++..++..-           ..+.+|+.+...|.+...+....|.+.                ..+
T Consensus       113 ~v~~~~sGsea~~~ai~~a~~~~-----------~~~~vi~~~~~yhg~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~  181 (434)
T 3l44_A          113 KVRFVNSGTEAVMTTIRVARAYT-----------GRTKIMKFAGCYHGHSDLVLVAAGSGPSTLGTPDSAGVPQSIAQEV  181 (434)
T ss_dssp             EEEEESSHHHHHHHHHHHHHHHH-----------CCCEEEEETTCCCCSSGGGGBC-------CCCBSSTTCCHHHHTTE
T ss_pred             EEEEeCchHHHHHHHHHHHHHhh-----------CCCEEEEEcCccCCCcHHHHhhcCCcccccCCCCcCCCCCcCCCce
Confidence            57999999999999999887631           123444445555544332222112100                023


Q ss_pred             EEEecCCCCCcCHHHHHHHHHHhhhcCCCcEEEEEeccCCccccccC----HHHHHHHHHHcCCEEEEeccccccccccc
Q psy14299         68 IRVKTNERGQMICSFLEQTIQTSLAEKKIPLFVNATAGTTVLGAFDP----LDEIATVCEKYDLWMHVDACWGGSLIFSE  143 (448)
Q Consensus        68 ~~v~~~~~g~id~e~Le~~l~~~~~~~~~~~lVv~~~~~t~tG~~~~----l~~I~~ia~~~g~~l~VD~A~~~~~~~~~  143 (448)
                      ..+|.+     |+++|++++++..   .++.+|+++..++++|.+.|    +++|.++|++||+++|+|++|.+. ....
T Consensus       182 ~~~~~~-----d~~~le~~l~~~~---~~~~~vi~ep~~~~~G~~~~~~~~l~~l~~l~~~~~illI~DEv~~g~-~~g~  252 (434)
T 3l44_A          182 ITVPFN-----NVETLKEALDKWG---HEVAAILVEPIVGNFGIVEPKPGFLEKVNELVHEAGALVIYDEVITAF-RFMY  252 (434)
T ss_dssp             EEECTT-----CHHHHHHHHHHHG---GGEEEEEECSSBCTTSCBCCCTTHHHHHHHHHHTTTCEEEEECTTTTT-TSSS
T ss_pred             EecCcc-----cHHHHHHHHHhCC---CCEEEEEEcCCCCCCCCccCCHHHHHHHHHHHHHcCCEEEEeccccce-eccc
Confidence            344433     8999999997531   24667888877777888888    999999999999999999999854 2111


Q ss_pred             chhhhhcCCCCccEEEECCccccCCCCceEEEEEec
Q psy14299        144 KYSFVLKGINRANSVSWNPHKMLGAPLQCSILLIKE  179 (448)
Q Consensus       144 ~~~~~~~~~~~aD~~~~s~hK~l~~P~g~G~l~vr~  179 (448)
                      .......++ ..|++++  .|.++++..+|.++.++
T Consensus       253 ~~~~~~~~~-~~di~t~--sK~~~~G~~iG~~~~~~  285 (434)
T 3l44_A          253 GGAQDLLGV-TPDLTAL--GKVIGGGLPIGAYGGKK  285 (434)
T ss_dssp             SCHHHHHTC-CCSEEEE--EGGGGTTSSCEEEEECH
T ss_pred             cHHHHHcCC-CCCeeeh--hhhhcCCcCeeeEEEcH
Confidence            111111222 2576655  59888777889886644

>3hmu_A Aminotransferase, class III; structural genomics, pyridoxal phosphate, PSI-2, protein structure initiative; 2.10A {Silicibacter pomeroyi}

Probab=99.66  E-value=5.6e-14  Score=145.77  Aligned_cols=167  Identities=19%  Similarity=0.181  Sum_probs=106.1

Q ss_pred             cEEEeCcHHHHHHHHHHHHHHhcCCcccccCCCCCCCeEEEecCCCchHHHHHHHHhCCC--------CCcEEEEecCCC
Q psy14299          4 KPFLLPGGSISNMYSICLARYRLDPDTKRKGLSHLPPLCMFTSEDSHYSMLKAAHWLGIG--------MDNVIRVKTNER   75 (448)
Q Consensus         4 ~g~~t~ggT~an~~al~~a~~~~~~~~~~~G~~~~~~~~Vl~~~~~H~s~~~~~~~~g~~--------~~~v~~v~~~~~   75 (448)
                      .++|++|||+||..|+.+++...    ...|.+ ..+.+|......|.+...+....+..        ...+..++.+..
T Consensus       118 ~v~~~~sGseA~~~aik~a~~~~----~~~g~~-~~~~ii~~~~~yHg~t~~~~~~~~~~~~~~~~~~~~~~~~v~~p~~  192 (472)
T 3hmu_A          118 HVFFAGGGSEANDTNIRMVRTYW----QNKGQP-EKTVIISRKNAYHGSTVASSALGGMAGMHAQSGLIPDVHHINQPNW  192 (472)
T ss_dssp             EEEEESSHHHHHHHHHHHHHHHH----HHTTCT-TCCEEEEETTCCCCSSHHHHHHSCCHHHHHTTCCCSSEEEECCCCH
T ss_pred             EEEEeCCHHHHHHHHHHHHHHHH----HhcCCC-CCCEEEEEcCcCCCccHHhhhccCChhhccccCCCCCcEEeCCCcc
Confidence            47999999999999999988631    111211 13445666677776655554443321        113555654321


Q ss_pred             CC----cC--------HHHHHHHHHHhhhcCCCcEEEEEeccCCccccccC----HHHHHHHHHHcCCEEEEeccccccc
Q psy14299         76 GQ----MI--------CSFLEQTIQTSLAEKKIPLFVNATAGTTVLGAFDP----LDEIATVCEKYDLWMHVDACWGGSL  139 (448)
Q Consensus        76 g~----id--------~e~Le~~l~~~~~~~~~~~lVv~~~~~t~tG~~~~----l~~I~~ia~~~g~~l~VD~A~~~~~  139 (448)
                      .+    .|        +++|++++++..  ..++.+|++..+.+++|.+.|    +++|.++|++||+++++|++|.+..
T Consensus       193 ~~~~~~~~~~~~~~~~~~~le~~i~~~~--~~~~aavi~epv~~~gG~~~~~~~~l~~l~~l~~~~gillI~DEv~~gfg  270 (472)
T 3hmu_A          193 WAEGGDMDPEEFGLARARELEEAILELG--ENRVAAFIAEPVQGAGGVIVAPDSYWPEIQRICDKYDILLIADEVICGFG  270 (472)
T ss_dssp             HHHCTTCCHHHHHHHHHHHHHHHHHHHC--GGGEEEEEECSSBSTTTCBCCCTTHHHHHHHHHHHTTCEEEEECTTTTTT
T ss_pred             ccCCcccCHHHHHHHHHHHHHHHHHhcC--CCCEEEEEEcCccCCCCcccCCHHHHHHHHHHHHHcCCEEEEEccccCCc
Confidence            11    34        788888886421  124677888888888888887    9999999999999999999987532


Q ss_pred             ccccchhhhhcCCCCccEEEECCccccCCC-CceEEEEEecc
Q psy14299        140 IFSEKYSFVLKGINRANSVSWNPHKMLGAP-LQCSILLIKEK  180 (448)
Q Consensus       140 ~~~~~~~~~~~~~~~aD~~~~s~hK~l~~P-~g~G~l~vr~~  180 (448)
                      .....+.....++ ..|+++++  |.+++. ..+|+++.+++
T Consensus       271 r~G~~~a~~~~~v-~pdi~t~s--K~l~gg~~plG~v~~~~~  309 (472)
T 3hmu_A          271 RTGNWFGTQTMGI-RPHIMTIA--KGLSSGYAPIGGSIVCDE  309 (472)
T ss_dssp             TTSSSCHHHHHTC-CCSEEEEC--GGGTTTSSCCEEEEEEHH
T ss_pred             ccCccchhHHhCC-CCceeeec--hhhhcCCcceEEEEECHH
Confidence            1111111111233 36888765  998875 36788777554

>3k28_A Glutamate-1-semialdehyde 2,1-aminomutase 2; biosynthesis of cofactors, prosthetic groups, and carriers, csgid, cytoplasm, isomerase; HET: MSE PLP; 1.95A {Bacillus anthracis str} SCOP: c.67.1.4 PDB: 3bs8_A*

Probab=99.65  E-value=4.9e-15  Score=151.42  Aligned_cols=153  Identities=16%  Similarity=0.053  Sum_probs=100.8

Q ss_pred             cEEEeCcHHHHHHHHHHHHHHhcCCcccccCCCCCCCeEEEecCCCchHHHHHHHHhCCCCC----------------cE
Q psy14299          4 KPFLLPGGSISNMYSICLARYRLDPDTKRKGLSHLPPLCMFTSEDSHYSMLKAAHWLGIGMD----------------NV   67 (448)
Q Consensus         4 ~g~~t~ggT~an~~al~~a~~~~~~~~~~~G~~~~~~~~Vl~~~~~H~s~~~~~~~~g~~~~----------------~v   67 (448)
                      .++||+|||++|..++..++..-           ..+.+|+.+...|.+...+....|.+..                .+
T Consensus       111 ~v~~~~~Gsea~~~ai~~a~~~~-----------~~~~vi~~~~~yhg~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~  179 (429)
T 3k28_A          111 IVRMVNSGTEATMSALRLARGYT-----------GRNKILKFIGCYHGHGDSLLIKAGSGVATLGLPDSPGVPEGVAKNT  179 (429)
T ss_dssp             EEEEESSHHHHHHHHHHHHHHHH-----------TCCEEEEEETCCCCSCGGGCSSCCTTC-----CCCTTCCHHHHTTE
T ss_pred             EEEEeCChHHHHHHHHHHHHHhh-----------CCCEEEEECCCcCCCcHHHHHhcCCcccccCCCCcCCCCCcccCce
Confidence            57999999999999998887631           1334555566666554433322222100                23


Q ss_pred             EEEecCCCCCcCHHHHHHHHHHhhhcCCCcEEEEEeccCCccccccC----HHHHHHHHHHcCCEEEEeccccccccccc
Q psy14299         68 IRVKTNERGQMICSFLEQTIQTSLAEKKIPLFVNATAGTTVLGAFDP----LDEIATVCEKYDLWMHVDACWGGSLIFSE  143 (448)
Q Consensus        68 ~~v~~~~~g~id~e~Le~~l~~~~~~~~~~~lVv~~~~~t~tG~~~~----l~~I~~ia~~~g~~l~VD~A~~~~~~~~~  143 (448)
                      ..+|.+     |+++|++++++..   .++.+|++....+++|.+.|    +++|.++|++||+++|+|++|.+. ....
T Consensus       180 ~~~~~~-----d~~~le~~l~~~~---~~~~~vi~ep~~~~~G~~~~~~~~l~~l~~l~~~~~~~li~DEv~~g~-~~g~  250 (429)
T 3k28_A          180 ITVAYN-----DLESVKYAFEQFG---DDIACVIVEPVAGNMGVVPPQPGFLEGLREVTEQNGALLIFDEVMTGF-RVAY  250 (429)
T ss_dssp             EEEETT-----CHHHHHHHHHHHG---GGEEEEEECSSBCTTSCBCCCTTHHHHHHHHHHHHTCEEEEECTTTTT-TSST
T ss_pred             eecCCC-----CHHHHHHHHHhCC---CCEEEEEEcCCCCCCCcccCCHHHHHHHHHHHHHcCCEEEEecccccc-ccCc
Confidence            333433     8999999997531   24677888888878888888    999999999999999999999743 2111


Q ss_pred             chhhhhcCCCCccEEEECCccccCCCCceEEEEEec
Q psy14299        144 KYSFVLKGINRANSVSWNPHKMLGAPLQCSILLIKE  179 (448)
Q Consensus       144 ~~~~~~~~~~~aD~~~~s~hK~l~~P~g~G~l~vr~  179 (448)
                      .......++ ..|.+++  .|.+++...+|+++.++
T Consensus       251 ~~~~~~~~~-~~di~t~--sK~~~~G~~iG~~~~~~  283 (429)
T 3k28_A          251 NCGQGYYGV-TPDLTCL--GKVIGGGLPVGAYGGKA  283 (429)
T ss_dssp             THHHHHHTC-CCSEEEE--CGGGGTTSCCEEEEECH
T ss_pred             chHHHHhCC-CCceehh--hhhhcCCCCeEEEEEcH
Confidence            111111222 2577765  59888767788887754

>1ohv_A 4-aminobutyrate aminotransferase; PLP-dependent enzyme, 4- AMIN acid, antiepileptic drug target; HET: PLP; 2.3A {Sus scrofa} SCOP: c.67.1.4 PDB: 1ohw_A* 1ohy_A*

Probab=99.65  E-value=4.2e-14  Score=146.71  Aligned_cols=134  Identities=10%  Similarity=-0.106  Sum_probs=86.0

Q ss_pred             cEEEeCcHHHHHHHHHHHHHHhcC------Cc--------ccccCCCCC-CCeEEEecCCCchHHHHHHHHhCCCC----
Q psy14299          4 KPFLLPGGSISNMYSICLARYRLD------PD--------TKRKGLSHL-PPLCMFTSEDSHYSMLKAAHWLGIGM----   64 (448)
Q Consensus         4 ~g~~t~ggT~an~~al~~a~~~~~------~~--------~~~~G~~~~-~~~~Vl~~~~~H~s~~~~~~~~g~~~----   64 (448)
                      .++|++|||+||..|+.+++....      ++        ....+-++. .+.+|......|-+...+....|...    
T Consensus       129 ~v~f~~sGseA~~~Aik~a~~~~~~~~~~~~~~t~~~~~~~~~~~~~g~~r~~ii~~~~~yHg~~~~~~~~~g~~~~~~~  208 (472)
T 1ohv_A          129 QLITMACGSCSNENAFKTIFMWYRSKERGQSAFSKEELETCMINQAPGCPDYSILSFMGAFHGRTMGCLATTHSKAIHKI  208 (472)
T ss_dssp             EEEEESSHHHHHHHHHHHHHHHHHHHHHTTCCCCHHHHHHHHTTCTTTSCCCEEEEETTCCCCSSHHHHHHCCSCHHHHT
T ss_pred             EEEEeCCchhHHHHHHHHHHHHhhhhccCcccccccccccccccccccCCCCeEEEECCCcccccHHHHhcCCCcccccc
Confidence            479999999999999998864310      00        000000111 23456666677777666665554310    


Q ss_pred             ----CcEEEEecCCC-C-------------CcCHHHHHHHHHHhhhcCCCcEEEEEeccCCccccccC----HHHHHHHH
Q psy14299         65 ----DNVIRVKTNER-G-------------QMICSFLEQTIQTSLAEKKIPLFVNATAGTTVLGAFDP----LDEIATVC  122 (448)
Q Consensus        65 ----~~v~~v~~~~~-g-------------~id~e~Le~~l~~~~~~~~~~~lVv~~~~~t~tG~~~~----l~~I~~ia  122 (448)
                          ..+..++.+.. .             ..|+++|+++|++....+.++++|++....+++|.+.|    +++|.++|
T Consensus       209 ~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~d~~~l~~~l~~~~~~~~~~~~vive~v~~~~G~~~~~~~~l~~l~~l~  288 (472)
T 1ohv_A          209 DIPSFDWPIAPFPRLKYPLEEFVKENQQEEARCLEEVEDLIVKYRKKKKTVAGIIVEPIQSEGGDNHASDDFFRKLRDIS  288 (472)
T ss_dssp             TSCCCCCCEECCCCCCSSGGGCHHHHHHHHHHHHHHHHHHHHHHHHTTCCEEEEEECSSBCTTTCBCCCHHHHHHHHHHH
T ss_pred             CCCCCCCcccCCCcccCccccccccchhHHHHHHHHHHHHHHhcCCCCCCEEEEEEcCCcCCCCCCCCCHHHHHHHHHHH
Confidence                00112232110 0             23688999999763221225788888888888999888    99999999


Q ss_pred             HHcCCEEEEeccccc
Q psy14299        123 EKYDLWMHVDACWGG  137 (448)
Q Consensus       123 ~~~g~~l~VD~A~~~  137 (448)
                      ++||+++|+|++|.+
T Consensus       289 ~~~g~lli~DEv~~g  303 (472)
T 1ohv_A          289 RKHGCAFLVDEVQTG  303 (472)
T ss_dssp             HHTTCEEEEECTTTT
T ss_pred             HHhCCEEEEeCcccC
Confidence            999999999999974

>3jzl_A Putative cystathionine beta-lyase involved in ALU resistance; putative cystathionine beta-lyase involved in aluminum resis structural genomics; HET: LLP; 1.91A {Listeria monocytogenes str} PDB: 3fd0_A*

Probab=99.65  E-value=3e-15  Score=152.50  Aligned_cols=149  Identities=11%  Similarity=0.103  Sum_probs=116.1

Q ss_pred             eCcHHHHHHHHHHHHHHhcCCcccccCCCCCCCeEEEecC-CCchHHHHHH----------HHhCCCCCcEEEEecCCCC
Q psy14299          8 LPGGSISNMYSICLARYRLDPDTKRKGLSHLPPLCMFTSE-DSHYSMLKAA----------HWLGIGMDNVIRVKTNERG   76 (448)
Q Consensus         8 t~ggT~an~~al~~a~~~~~~~~~~~G~~~~~~~~Vl~~~-~~H~s~~~~~----------~~~g~~~~~v~~v~~~~~g   76 (448)
                      ++|||+||..++.+..+              +++.|+++. ..|......+          +..|+   +++.++.++++
T Consensus        83 ~~sGt~Ai~~al~all~--------------~GD~Vl~~~~~~y~~~~~~~~~~g~~~~~l~~~G~---~~~~v~~~~~g  145 (409)
T 3jzl_A           83 IISGTHAISTVLFGILR--------------PDDELLYITGQPYDTLEEIVGIRKQGQGSLKDFHI---GYSSVPLLENG  145 (409)
T ss_dssp             SCSHHHHHHHHHHHHCC--------------TTCEEEECSSSCCTTHHHHHTSSSSSSSCTGGGTC---EEEECCCCTTS
T ss_pred             CccHHHHHHHHHHHhcC--------------CCCEEEEeCCCCcHhHHHHHhcccchhhHHHHcCC---EEEEeCCCCCC
Confidence            78999999888776543              677888887 7787776543          34466   78899998899


Q ss_pred             CcCHHHHHHHHHHhhhcCCCcEEEEEec----cCCccccccCHHHHHHHHHH--cCCEEEEecccccccccccchhhhhc
Q psy14299         77 QMICSFLEQTIQTSLAEKKIPLFVNATA----GTTVLGAFDPLDEIATVCEK--YDLWMHVDACWGGSLIFSEKYSFVLK  150 (448)
Q Consensus        77 ~id~e~Le~~l~~~~~~~~~~~lVv~~~----~~t~tG~~~~l~~I~~ia~~--~g~~l~VD~A~~~~~~~~~~~~~~~~  150 (448)
                      .+|+++|++++++      ++++|++.+    ++|++|.+.|+++|+++||+  ||++++||++|+.+....+...    
T Consensus       146 ~~d~e~l~~ai~~------~tklV~i~~s~g~p~nptg~v~~l~~I~~la~~~~~~~~livD~a~~~~~~~~~p~~----  215 (409)
T 3jzl_A          146 DVDFPRIAKKMTP------KTKMIGIQRSRGYADRPSFTIEKIKEMIVFVKNINPEVIVFVDNCYGEFVEYQEPPE----  215 (409)
T ss_dssp             CCCHHHHHHHCCT------TEEEEEEECSCTTSSSCCCCHHHHHHHHHHHHHHCTTCEEEEECTTCTTTSSCCSGG----
T ss_pred             CcCHHHHHHhccC------CCeEEEEECCCCCCCCCcCccccHHHHHHHHHhhCCCCEEEEeCCcccccccCCccc----
Confidence            9999999999854      588999999    99999999999999999999  9999999999987653222111    


Q ss_pred             CCCCccEEEECCccccCCCCc--eEEEEEeccchhhhh
Q psy14299        151 GINRANSVSWNPHKMLGAPLQ--CSILLIKEKGLLHQA  186 (448)
Q Consensus       151 ~~~~aD~~~~s~hK~l~~P~g--~G~l~vr~~~~~~~~  186 (448)
                        ..+|+++.|+||+++++..  .|+++. ++++....
T Consensus       216 --~g~Div~~S~sK~lgg~~~~~GG~v~~-~~~li~~l  250 (409)
T 3jzl_A          216 --VGADIIAGSLIKNPGGGLAKTGGYIAG-KEALVDLC  250 (409)
T ss_dssp             --GTCSEEEEETTSGGGTTTCSSCEEEEE-CHHHHHHH
T ss_pred             --cCCeEEEECccccCCccCCceEEEEEe-CHHHHHHH
Confidence              1479999999999987642  366555 45554443

>3oks_A 4-aminobutyrate transaminase; ssgcid, transferase, seattle structural genomics center for infectious disease; HET: LLP; 1.80A {Mycobacterium smegmatis} PDB: 3r4t_A* 3q8n_A

Probab=99.64  E-value=9.3e-14  Score=143.14  Aligned_cols=162  Identities=14%  Similarity=0.067  Sum_probs=98.8

Q ss_pred             cEEEeCcHHHHHHHHHHHHHHhcCCcccccCCCCCCCeEEEecCCCchHHHHHHHHhCCC----------CCcEEEEecC
Q psy14299          4 KPFLLPGGSISNMYSICLARYRLDPDTKRKGLSHLPPLCMFTSEDSHYSMLKAAHWLGIG----------MDNVIRVKTN   73 (448)
Q Consensus         4 ~g~~t~ggT~an~~al~~a~~~~~~~~~~~G~~~~~~~~Vl~~~~~H~s~~~~~~~~g~~----------~~~v~~v~~~   73 (448)
                      .++||+|||+||..|+..++..-           ..+.+|......|-....+....+..          ...+..+|.+
T Consensus       124 ~v~~~~sGseA~~~Alk~a~~~~-----------g~~~ii~~~~~yhG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  192 (451)
T 3oks_A          124 RSALFNSGSEAVENAVKIARSHT-----------HKPAVVAFDHAYHGRTNLTMALTAKVMPYKDGFGPFAPEIYRAPLS  192 (451)
T ss_dssp             EEEEESSHHHHHHHHHHHHHHHH-----------CCCEEEEETTCCCCSSHHHHHHCCCCTTTTTTCCSCCSSEEEECCC
T ss_pred             EEEEeCcHHHHHHHHHHHHHHhc-----------CCCeEEEEcCCcCCccHHHHHhcCCCcccccCCCCCCCCcEEeCCC
Confidence            58999999999999998888631           13445555666665555554443321          0135666654


Q ss_pred             CCC-------------CcCHHHHHHHHHHhhhcCCCcEEEEEeccCCccccccC----HHHHHHHHHHcCCEEEEecccc
Q psy14299         74 ERG-------------QMICSFLEQTIQTSLAEKKIPLFVNATAGTTVLGAFDP----LDEIATVCEKYDLWMHVDACWG  136 (448)
Q Consensus        74 ~~g-------------~id~e~Le~~l~~~~~~~~~~~lVv~~~~~t~tG~~~~----l~~I~~ia~~~g~~l~VD~A~~  136 (448)
                      ...             .-+++.+++.|++... ...+.+|++....++.|.+.|    +++|.++|++||+++++|++|.
T Consensus       193 ~~~~~~~~g~~~~~~~~~~~~~~~~~l~~~~~-~~~~aavi~ep~~~~gG~~~~~~~~l~~l~~l~~~~g~~lI~DEv~~  271 (451)
T 3oks_A          193 YPFRDAEFGKELATDGELAAKRAITVIDKQIG-ADNLAAVVIEPIQGEGGFIVPADGFLPTLLDWCRKNDVVFIADEVQT  271 (451)
T ss_dssp             CHHHHGGGCTTTTTCHHHHHHHHHHHHHHHTC-GGGEEEEEECSSBTTTTCBCCCTTHHHHHHHHHHHTTCEEEEECTTT
T ss_pred             ccccccccccccchhhHHHHHHHHHHHHhhcC-CCCEEEEEEcCCcCCCCccCCCHHHHHHHHHHHHHcCCEEEEEeccc
Confidence            211             1234555555553211 124556666666666677766    9999999999999999999987


Q ss_pred             cccccccchhhhhcCCCCccEEEECCccccCCCCceEEEEEecc
Q psy14299        137 GSLIFSEKYSFVLKGINRANSVSWNPHKMLGAPLQCSILLIKEK  180 (448)
Q Consensus       137 ~~~~~~~~~~~~~~~~~~aD~~~~s~hK~l~~P~g~G~l~vr~~  180 (448)
                      +.......+.....++ ..|++++  .|.+++...+|+++.+++
T Consensus       272 g~g~~g~~~~~~~~~~-~pdi~t~--sK~l~~G~~iG~v~~~~~  312 (451)
T 3oks_A          272 GFARTGAMFACEHEGI-DPDLIVT--AKGIAGGLPLSAVTGRAE  312 (451)
T ss_dssp             TTTTTSSSSGGGGGTC-CCSEEEE--CGGGGTTSSCEEEEEEHH
T ss_pred             CCCccccchhhhhcCC-CCCeeee--hhhhhCCcceEEEEECHH
Confidence            4321111111111122 3577765  499877666788777553

>4ffc_A 4-aminobutyrate aminotransferase (GABT); structural genomics, niaid, national institute of allergy AN infectious diseases; HET: LLP; 1.80A {Mycobacterium abscessus}

Probab=99.64  E-value=1.1e-13  Score=142.77  Aligned_cols=163  Identities=12%  Similarity=0.037  Sum_probs=95.5

Q ss_pred             cEEEeCcHHHHHHHHHHHHHHhcCCcccccCCCCCCCeEEEecCCCchHHHHHHHHhCCC----------CCcEEEEecC
Q psy14299          4 KPFLLPGGSISNMYSICLARYRLDPDTKRKGLSHLPPLCMFTSEDSHYSMLKAAHWLGIG----------MDNVIRVKTN   73 (448)
Q Consensus         4 ~g~~t~ggT~an~~al~~a~~~~~~~~~~~G~~~~~~~~Vl~~~~~H~s~~~~~~~~g~~----------~~~v~~v~~~   73 (448)
                      .++||+|||+||..|+..++..-           ..+.+|......|.....+....+..          ...+..+|.+
T Consensus       127 ~v~~~~sGseA~~~alk~a~~~~-----------g~~~ii~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  195 (453)
T 4ffc_A          127 RTALFNSGAEAVENAIKVARLAT-----------GRPAVVAFDNAYHGRTNLTMALTAKSMPYKSQFGPFAPEVYRMPAS  195 (453)
T ss_dssp             EEEEESSHHHHHHHHHHHHHHHH-----------CCCEEEEETTCCCCSSHHHHHHCCCCTTTTTTSCSCCSSEEEECCC
T ss_pred             EEEEeCcHHHHHHHHHHHHHHhc-----------CCCEEEEEcCccCCcchHHHhhcCCCcccccCCCCCCCCcEEeCCC
Confidence            58999999999999998887531           13445666667776665555543321          0135566654


Q ss_pred             C----CCCcC-HHHHHHHHHHhhh--cCCCcEEEEEeccCCccccccC----HHHHHHHHHHcCCEEEEecccccccccc
Q psy14299         74 E----RGQMI-CSFLEQTIQTSLA--EKKIPLFVNATAGTTVLGAFDP----LDEIATVCEKYDLWMHVDACWGGSLIFS  142 (448)
Q Consensus        74 ~----~g~id-~e~Le~~l~~~~~--~~~~~~lVv~~~~~t~tG~~~~----l~~I~~ia~~~g~~l~VD~A~~~~~~~~  142 (448)
                      .    ...++ .+.++..++...+  ....+.+|++.....+.|.+.|    +++|.++|++||+++++|++|.+.....
T Consensus       196 ~~~~~~~g~~~~~~~~~~~~~l~~~i~~~~~aavi~ep~~~~gG~~~~~~~~l~~l~~l~~~~~~llI~DEv~~g~g~~g  275 (453)
T 4ffc_A          196 YPLRDEPGLTGEEAARRAISRIETQIGAQSLAAIIIEPIQGEGGFIVPAPGFLATLTAWASENGVVFIADEVQTGFARTG  275 (453)
T ss_dssp             CTTTSCTTCCHHHHHHHHHHHHHHHTCGGGEEEEEECSSBTTTTSBCCCTTHHHHHHHHHHHHTCEEEEECTTTTTTTTS
T ss_pred             ccccCccccchHHHHHHHHHHHHHhcCCCCEEEEEEcCCCCCCCcccCCHHHHHHHHHHHHHcCCEEEEecCccCCCccc
Confidence            2    11222 2333322221111  1123455555555555667766    9999999999999999999987432111


Q ss_pred             cchhhhhcCCCCccEEEECCccccCCCCceEEEEEecc
Q psy14299        143 EKYSFVLKGINRANSVSWNPHKMLGAPLQCSILLIKEK  180 (448)
Q Consensus       143 ~~~~~~~~~~~~aD~~~~s~hK~l~~P~g~G~l~vr~~  180 (448)
                      ..+.....++ ..|+++++  |.+++...+|+++.+++
T Consensus       276 ~~~a~~~~~~-~pdi~t~s--K~~~~G~~~G~~~~~~~  310 (453)
T 4ffc_A          276 AWFASEHEGI-VPDIVTMA--KGIAGGMPLSAVTGRAE  310 (453)
T ss_dssp             SSSTHHHHTC-CCSEEEEC--GGGGTTSSCEEEEEEHH
T ss_pred             ccchhhhcCC-CcchHhhh--hhhcCCcCeEEEEECHH
Confidence            1111111222 35777765  98876566788777553

>3i5t_A Aminotransferase; pyridoxal 5'-phosphate, PSI-2, NYSGXRC, ST genomics, protein structure initiative; HET: PLP; 2.00A {Rhodobacter sphaeroides 2}

Probab=99.63  E-value=1.5e-13  Score=142.64  Aligned_cols=167  Identities=16%  Similarity=0.129  Sum_probs=105.4

Q ss_pred             cEEEeCcHHHHHHHHHHHHHHhcCCcccccCCCCCCCeEEEecCCCchHHHHHHHHhCCC---------CCcEEEEecCC
Q psy14299          4 KPFLLPGGSISNMYSICLARYRLDPDTKRKGLSHLPPLCMFTSEDSHYSMLKAAHWLGIG---------MDNVIRVKTNE   74 (448)
Q Consensus         4 ~g~~t~ggT~an~~al~~a~~~~~~~~~~~G~~~~~~~~Vl~~~~~H~s~~~~~~~~g~~---------~~~v~~v~~~~   74 (448)
                      .++|++|||+||..|+.+++...    ...|-+ ..+.+|......|.+...+....+..         ...+..++.+.
T Consensus       116 ~v~~~~sGseA~~~Aik~a~~~~----~~~g~~-~~~~vi~~~~~yHg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~  190 (476)
T 3i5t_A          116 RIFFTTGGSTAVDSALRFSEFYN----NVLGRP-QKKRIIVRYDGYHGSTALTAACTGRTGNWPNFDIAQDRISFLSSPN  190 (476)
T ss_dssp             EEEEESSHHHHHHHHHHHHHHHH----HHTTCT-TCCEEEEETTCCCCSSHHHHHTCCCGGGCTTSCCCCTTEEEECCCC
T ss_pred             EEEEeCchHHHHHHHHHHHHHHH----HhcCCC-CCCEEEEEcCCcCcCChhhccccCChhhccccCCCCCCcEEeCCCc
Confidence            58999999999999999988642    112211 13455666777777666555443321         11234444322


Q ss_pred             C--C-CcC--------HHHHHHHHHHhhhcCCCcEEEEEeccCCccccccC----HHHHHHHHHHcCCEEEEeccccccc
Q psy14299         75 R--G-QMI--------CSFLEQTIQTSLAEKKIPLFVNATAGTTVLGAFDP----LDEIATVCEKYDLWMHVDACWGGSL  139 (448)
Q Consensus        75 ~--g-~id--------~e~Le~~l~~~~~~~~~~~lVv~~~~~t~tG~~~~----l~~I~~ia~~~g~~l~VD~A~~~~~  139 (448)
                      .  . ..|        +++|++.+++..  ..++.+|++..+.+++|.+.|    +++|.++|++||+++++|++|.+..
T Consensus       191 ~~~~~~~~~~~~~~~~~~~le~~i~~~~--~~~~aavi~ep~~~~~G~~~~~~~~L~~l~~lc~~~gillI~DEv~~g~g  268 (476)
T 3i5t_A          191 PRHAGNRSQEAFLDDLVQEFEDRIESLG--PDTIAAFLAEPILASGGVIIPPAGYHARFKAICEKHDILYISDEVVTGFG  268 (476)
T ss_dssp             GGGCTTSCHHHHHHHHHHHHHHHHHHHC--GGGEEEEEECSSBTTTTSBCCCTTHHHHHHHHHHHTTCEEEEECTTTTTT
T ss_pred             ccccCCCchHHHHHHHHHHHHHHHHhcC--CCCEEEEEECCccCCCCcccCCHHHHHHHHHHHHHcCCEEEEEecccCCc
Confidence            1  1 112        789999887421  124678888888888887666    9999999999999999999987532


Q ss_pred             ccccchhhh-hcCCCCccEEEECCccccCCC-CceEEEEEecc
Q psy14299        140 IFSEKYSFV-LKGINRANSVSWNPHKMLGAP-LQCSILLIKEK  180 (448)
Q Consensus       140 ~~~~~~~~~-~~~~~~aD~~~~s~hK~l~~P-~g~G~l~vr~~  180 (448)
                      .....+... ..++ ..|+++++  |.+++. ..+|+++.+++
T Consensus       269 r~G~~~~~~~~~~v-~pdi~t~s--K~l~~G~~plg~v~~~~~  308 (476)
T 3i5t_A          269 RCGEWFASEKVFGV-VPDIITFA--KGVTSGYVPLGGLAISEA  308 (476)
T ss_dssp             TTSSSCHHHHTTCC-CCSEEEEC--GGGGTTSSCCEEEEECHH
T ss_pred             cccCceeeecccCC-Ccchhhhh--hhhcCCCcCeEEEEECHH
Confidence            111111111 1233 36888765  988875 56788777553

>3i16_A Aluminum resistance protein; YP_878183.1, carbon-sulfur lyase involved in aluminum resist structural genomics; HET: MSE TLA PLP; 2.00A {Clostridium novyi} PDB: 3gwp_A*

Probab=99.63  E-value=9.3e-15  Score=149.60  Aligned_cols=150  Identities=16%  Similarity=0.164  Sum_probs=115.4

Q ss_pred             eCcHHHHHHHHHHHHHHhcCCcccccCCCCCCCeEEEecC-CCchHHHHH-----------HHHhCCCCCcEEEEecCCC
Q psy14299          8 LPGGSISNMYSICLARYRLDPDTKRKGLSHLPPLCMFTSE-DSHYSMLKA-----------AHWLGIGMDNVIRVKTNER   75 (448)
Q Consensus         8 t~ggT~an~~al~~a~~~~~~~~~~~G~~~~~~~~Vl~~~-~~H~s~~~~-----------~~~~g~~~~~v~~v~~~~~   75 (448)
                      ++|||++|..++.+..+              +++.|+++. ..|......           ++..|+   +++.++.+++
T Consensus        97 ~~sGt~Ai~~al~all~--------------pGD~Vl~~~~~~y~~~~~~~g~~~~~~~~~l~~~G~---~~~~v~~~~~  159 (427)
T 3i16_A           97 FVNGTHALGAALFGNLR--------------PGNTMLSVCGEPYDTLHDVIGITENSNMGSLKEFGI---NYKQVDLKED  159 (427)
T ss_dssp             CCSHHHHHHHHHHHHCC--------------TTCEEEESSSSCCGGGHHHHTCSCCCSSCCTGGGTC---EEEECCCCTT
T ss_pred             CccHHHHHHHHHHHHhC--------------CCCEEEEeCCCccHHHHHHHhccccchHHHHHHcCC---EEEEecCccC
Confidence            89999999888776543              677888887 777665533           344566   7889999889


Q ss_pred             CCcCHHHHHHHHHHhhhcCCCcEEEEEec----cCCccccccCHHHHHHHHHH--cCCEEEEecccccccccccchhhhh
Q psy14299         76 GQMICSFLEQTIQTSLAEKKIPLFVNATA----GTTVLGAFDPLDEIATVCEK--YDLWMHVDACWGGSLIFSEKYSFVL  149 (448)
Q Consensus        76 g~id~e~Le~~l~~~~~~~~~~~lVv~~~----~~t~tG~~~~l~~I~~ia~~--~g~~l~VD~A~~~~~~~~~~~~~~~  149 (448)
                      |.+|+++|++++++    +.++++|++++    +++++|.+.|+++|+++||+  +|++++||++|+.+........   
T Consensus       160 g~~D~e~l~~~l~~----~~~tklV~i~~s~~~p~nptg~i~dl~~i~~la~~~~~g~~livD~a~~~~~~~~~p~~---  232 (427)
T 3i16_A          160 GKPNLEEIEKVLKE----DESITLVHIQRSTGYGWRRALLIEDIKSIVDCVKNIRKDIICFVDNCYGEFMDTKEPTD---  232 (427)
T ss_dssp             SSCCHHHHHHHHHT----CTTEEEEEEECSCCSSSSCCCCHHHHHHHHHHHHHHCTTSEEEEECTTTTTSSSSCGGG---
T ss_pred             CCcCHHHHHHHhhC----CCCCEEEEEEcCCCCCCCCcccHHHHHHHHHHHHHhCCCCEEEEECCCccccccCCccc---
Confidence            99999999999973    12589999999    99999999999999999999  9999999999987763222111   


Q ss_pred             cCCCCccEEEECCccccCCCC--ceEEEEEeccchhhh
Q psy14299        150 KGINRANSVSWNPHKMLGAPL--QCSILLIKEKGLLHQ  185 (448)
Q Consensus       150 ~~~~~aD~~~~s~hK~l~~P~--g~G~l~vr~~~~~~~  185 (448)
                         ..+|+++.|+||+++++.  ..|+++.+ +++...
T Consensus       233 ---~gaDiv~~S~sK~lgg~g~~~gG~i~~~-~~li~~  266 (427)
T 3i16_A          233 ---VGADLIAGSLIKNIGGGIAPTGGYLAGT-KDCIEK  266 (427)
T ss_dssp             ---GTCSEEEEETTSGGGTTTCCSCEEEEEC-HHHHHH
T ss_pred             ---cCCeEEEecCcccCCCCCCceEEEEEEC-HHHHHH
Confidence               147999999999998732  23666664 444444

>4eu1_A Mitochondrial aspartate aminotransferase; ssgcid, structural genomics, SEA structural genomics center for infectious disease; HET: LLP; 2.30A {Trypanosoma brucei}

Probab=99.62  E-value=6.3e-15  Score=149.36  Aligned_cols=159  Identities=9%  Similarity=-0.003  Sum_probs=112.5

Q ss_pred             EEeCcHHHHHHHHHHHHHHhcCCcccccCCCCCCCeEEEecCCCchHHHHHHHHhCCCCCcEEEEec--CCCCCcCHHHH
Q psy14299          6 FLLPGGSISNMYSICLARYRLDPDTKRKGLSHLPPLCMFTSEDSHYSMLKAAHWLGIGMDNVIRVKT--NERGQMICSFL   83 (448)
Q Consensus         6 ~~t~ggT~an~~al~~a~~~~~~~~~~~G~~~~~~~~Vl~~~~~H~s~~~~~~~~g~~~~~v~~v~~--~~~g~id~e~L   83 (448)
                      ..|.|||.++..+...++...           .+++.|+++...|.++...++..|.   +++.+|.  ++++.+|+++|
T Consensus       108 ~~~~~g~ga~~~~~~~~~~~~-----------~~gd~Vlv~~p~y~~~~~~~~~~g~---~~~~~~~~~~~~~~~d~~~l  173 (409)
T 4eu1_A          108 CQTLGGTGALRIGGDLLNRFV-----------ANCNRIYGPDVGYPNHESIFAKAGM---ELTPYSYYDPATKGLNLAGM  173 (409)
T ss_dssp             EEESHHHHHHHHHHHHGGGTS-----------SSCCEEEEESSCCTHHHHHHHHTTC---EEEEECCEETTTTEECHHHH
T ss_pred             eecccchHHHHHHHHHHHHhc-----------CCCCEEEEeCCCcHhHHHHHHHcCC---eEEEEEeecCcCCcCcHHHH
Confidence            459999999876654433221           2567899999999999999999998   7888887  35678999999


Q ss_pred             HHHHHHhhhcCCCcEEEEEeccCCccccccC---HHHHHHHHHHcCCEEEEecccccccccc---cchhh-hhcCCCCcc
Q psy14299         84 EQTIQTSLAEKKIPLFVNATAGTTVLGAFDP---LDEIATVCEKYDLWMHVDACWGGSLIFS---EKYSF-VLKGINRAN  156 (448)
Q Consensus        84 e~~l~~~~~~~~~~~lVv~~~~~t~tG~~~~---l~~I~~ia~~~g~~l~VD~A~~~~~~~~---~~~~~-~~~~~~~aD  156 (448)
                      ++.+++.   ..++++++++.++|+||.+.+   +++|+++|++||+++++|++|+......   +.... .+.+...-.
T Consensus       174 ~~~l~~~---~~~~~~i~~~~p~NPtG~~~~~~~l~~i~~~~~~~~~~li~De~y~~~~~~~~~~~~~~~~~~~~~~~~~  250 (409)
T 4eu1_A          174 LECLDKA---PEGSVILVHACAHNPTGVDPTHDDWRQVCDVIKRRNHIPFVDMAYQGFATGQLDYDAFVPRHLVDMVPNL  250 (409)
T ss_dssp             HHHHHHS---CTTCEEEEESSSCTTTCCCCCHHHHHHHHHHHHHTTCEEEEEESCTTTTTSCHHHHTHHHHHHHTTSSCC
T ss_pred             HHHHHhC---CCCcEEEEECCCCCCCCCCCCHHHHHHHHHHHHhCCcEEEEeccccccccCCcccchHHHHHHHhhCCcE
Confidence            9999752   124667777999999999877   5559999999999999999988654321   01110 011111123


Q ss_pred             EEEECCccccCCCC-ceEEE--EEeccc
Q psy14299        157 SVSWNPHKMLGAPL-QCSIL--LIKEKG  181 (448)
Q Consensus       157 ~~~~s~hK~l~~P~-g~G~l--~vr~~~  181 (448)
                      +++.+++|.++.|. .+|++  ++.++.
T Consensus       251 i~~~S~SK~~g~~G~riG~~~~v~~~~~  278 (409)
T 4eu1_A          251 IVAQSFSKNFGLYGHRCGALHISTASAE  278 (409)
T ss_dssp             EEEEECTTTSSCGGGCCEEEEEECSSHH
T ss_pred             EEEecCcccccCccCCceEEEEEeCCHH
Confidence            56678899987552 35665  555544

>4e77_A Glutamate-1-semialdehyde 2,1-aminomutase; structural genomics, center for structural genomics of infec diseases, csgid, porphyrin biosynthesis; 2.00A {Yersinia pestis}

Probab=99.61  E-value=1.3e-13  Score=140.82  Aligned_cols=153  Identities=12%  Similarity=0.066  Sum_probs=95.1

Q ss_pred             cEEEeCcHHHHHHHHHHHHHHhcCCcccccCCCCCCCeEEEecCCCchHHHHHHHHhCCCC----------------CcE
Q psy14299          4 KPFLLPGGSISNMYSICLARYRLDPDTKRKGLSHLPPLCMFTSEDSHYSMLKAAHWLGIGM----------------DNV   67 (448)
Q Consensus         4 ~g~~t~ggT~an~~al~~a~~~~~~~~~~~G~~~~~~~~Vl~~~~~H~s~~~~~~~~g~~~----------------~~v   67 (448)
                      .++||+|||++|..++..++..-           .++.+|..+...|..........+.+.                ..+
T Consensus       111 ~v~~~~sGsea~~~al~~a~~~~-----------~~~~ii~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  179 (429)
T 4e77_A          111 MVRMVNSGTEATMSAIRLARGYT-----------GRDKIIKFEGCYHGHADCLLVKAGSGALTLGQPNSPGVPTDFAKHT  179 (429)
T ss_dssp             EEEEESSHHHHHHHHHHHHHHHH-----------CCCEEEEETTCCCC------------------CCCTTSCGGGGTTE
T ss_pred             EEEEeCcHHHHHHHHHHHHHHhh-----------CCCEEEEEcCccCCCChhhhhhcCCcccccCCCCcCCCCCccCCce
Confidence            57999999999999998877531           134556666666766553332222110                012


Q ss_pred             EEEecCCCCCcCHHHHHHHHHHhhhcCCCcEEEEEeccCCccccccC----HHHHHHHHHHcCCEEEEeccccccccccc
Q psy14299         68 IRVKTNERGQMICSFLEQTIQTSLAEKKIPLFVNATAGTTVLGAFDP----LDEIATVCEKYDLWMHVDACWGGSLIFSE  143 (448)
Q Consensus        68 ~~v~~~~~g~id~e~Le~~l~~~~~~~~~~~lVv~~~~~t~tG~~~~----l~~I~~ia~~~g~~l~VD~A~~~~~~~~~  143 (448)
                      ..++.+     |+++|++++++.   +.++.+|+++...++.|.+.|    +++|.++|++||+++|+|++|++. ....
T Consensus       180 ~~~~~~-----d~~~le~~l~~~---~~~~~~vi~ep~~~~~g~~~~~~~~l~~l~~l~~~~~~lli~DEv~~g~-r~g~  250 (429)
T 4e77_A          180 LTCTYN-----DLASVRQAFEQY---PQEVACIIVEPVAGNMNCIPPLPEFLPGLRALCDEFGALLIIDEVMTGF-RVAL  250 (429)
T ss_dssp             EEECTT-----CHHHHHHHHHHS---TTTEEEEEECSSBCTTSCBCCCTTHHHHHHHHHHHHTCEEEEEETTTBT-TTBT
T ss_pred             eecCCC-----CHHHHHHHHHhc---CCCEEEEEECCccCCCCCcCCCHHHHHHHHHHHHHcCCEEEEeccccCc-ccCc
Confidence            333332     899999999752   224667777777777788888    999999999999999999999843 2111


Q ss_pred             chhhhhcCCCCccEEEECCccccCCCCceEEEEEec
Q psy14299        144 KYSFVLKGINRANSVSWNPHKMLGAPLQCSILLIKE  179 (448)
Q Consensus       144 ~~~~~~~~~~~aD~~~~s~hK~l~~P~g~G~l~vr~  179 (448)
                      .......++ ..|++++  .|.+++....|+++.++
T Consensus       251 ~~~~~~~~~-~pdi~t~--sK~~~~G~~~G~~~~~~  283 (429)
T 4e77_A          251 AGAQDYYHV-IPDLTCL--GKIIGGGMPVGAFGGRR  283 (429)
T ss_dssp             TCHHHHTTC-CCSEEEE--EGGGGTTSCCEEEEECH
T ss_pred             chHHHhcCC-CCCeeee--cccccCCCCeEEEEECH
Confidence            111111122 2477654  59888766788776644

>3fq8_A Glutamate-1-semialdehyde 2,1-aminomutase; drug resistance, microev0lution, integrated approach, chlorophyll biosynthesis; HET: PMP; 2.00A {Synechococcus elongatus pcc 6301} SCOP: c.67.1.4 PDB: 2hp1_A* 2hoz_A* 2hoy_A* 2hp2_A* 3fq7_A* 3usf_A* 2gsa_A* 3gsb_A* 4gsa_A* 3fqa_A* 2cfb_A*

Probab=99.60  E-value=3.5e-14  Score=144.74  Aligned_cols=153  Identities=12%  Similarity=-0.021  Sum_probs=100.5

Q ss_pred             cEEEeCcHHHHHHHHHHHHHHhcCCcccccCCCCCCCeEEEecCCCchHHHHHHHHhC-------CC---------CCcE
Q psy14299          4 KPFLLPGGSISNMYSICLARYRLDPDTKRKGLSHLPPLCMFTSEDSHYSMLKAAHWLG-------IG---------MDNV   67 (448)
Q Consensus         4 ~g~~t~ggT~an~~al~~a~~~~~~~~~~~G~~~~~~~~Vl~~~~~H~s~~~~~~~~g-------~~---------~~~v   67 (448)
                      .++||+|||++|..++..++..-           .++.+|+.....|.+...+....+       ..         ...+
T Consensus       110 ~v~~~~ggsea~~~al~~a~~~~-----------~~~~vi~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  178 (427)
T 3fq8_A          110 MVRFVNSGTEACMAVLRIMRAYT-----------GRDKIIKFEGCYHGHADMFLVKAGSGVATLGLPSSPGVPKKTTANT  178 (427)
T ss_dssp             EEEEESSHHHHHHHHHHHHHHHH-----------CCCEEEEEETCCCCSCGGGCSSCCTHHHHHTCCSCSSSCHHHHTTE
T ss_pred             EEEEeCCHHHHHHHHHHHHHHhh-----------CCCEEEEECCCcCCCCHHHHHhcCCcccccCCCCCCCCCCcccCce
Confidence            57999999999999998776531           134455555666643322111111       00         0024


Q ss_pred             EEEecCCCCCcCHHHHHHHHHHhhhcCCCcEEEEEeccCCccccccC----HHHHHHHHHHcCCEEEEeccccccccccc
Q psy14299         68 IRVKTNERGQMICSFLEQTIQTSLAEKKIPLFVNATAGTTVLGAFDP----LDEIATVCEKYDLWMHVDACWGGSLIFSE  143 (448)
Q Consensus        68 ~~v~~~~~g~id~e~Le~~l~~~~~~~~~~~lVv~~~~~t~tG~~~~----l~~I~~ia~~~g~~l~VD~A~~~~~~~~~  143 (448)
                      ..+|.+     |+++|++++++.   +.++++|+++...+++|.+.|    +++|.++|++||+++++|++|++. ....
T Consensus       179 ~~~~~~-----d~~~le~~l~~~---~~~~~~vi~~p~~~~~G~~~~~~~~l~~l~~l~~~~~~~li~DEv~~g~-~~g~  249 (427)
T 3fq8_A          179 LTTPYN-----DLEAVKALFAEN---PGEIAGVILEPIVGNSGFIVPDAGFLEGLREITLEHDALLVFDEVITGF-RIAY  249 (427)
T ss_dssp             EEEETT-----CHHHHHHHHHHS---TTTEEEEEECSSBCTTSCBCCCTTHHHHHHHHHHHTTCEEEEECTTTBT-TTBT
T ss_pred             eecCCC-----CHHHHHHHHHhC---CCCEEEEEEcCCcCCCCCcCCCHHHHHHHHHHHHHcCCEEEEecccccc-ccCc
Confidence            455544     899999999762   235788888888888999999    999999999999999999999843 2111


Q ss_pred             chhhhhcCCCCccEEEECCccccCCCCceEEEEEec
Q psy14299        144 KYSFVLKGINRANSVSWNPHKMLGAPLQCSILLIKE  179 (448)
Q Consensus       144 ~~~~~~~~~~~aD~~~~s~hK~l~~P~g~G~l~vr~  179 (448)
                      .......++ ..|+++++  |++++...+|+++.++
T Consensus       250 ~~~~~~~~~-~~di~t~s--K~~~~G~~~G~~~~~~  282 (427)
T 3fq8_A          250 GGVQEKFGV-TPDLTTLG--KIIGGGLPVGAYGGKR  282 (427)
T ss_dssp             THHHHHTTC-CCSEEEEC--GGGGTTSSCEEEEECH
T ss_pred             chhhHhcCC-CCChhhhh--hhhhCCcceEEEEEcH
Confidence            111111222 25777665  9988544588876644

>3hvy_A Cystathionine beta-lyase family protein, YNBB B.S ortholog; NP_348457.1, putative cystathionine beta-lyase involved in A resistance; HET: LLP MSE; 2.00A {Clostridium acetobutylicum}

Probab=99.60  E-value=2.1e-14  Score=147.02  Aligned_cols=148  Identities=13%  Similarity=0.106  Sum_probs=113.1

Q ss_pred             eCcHHHHHHHHHHHHHHhcCCcccccCCCCCCCeEEEecC-CCchHHH-----------HHHHHhCCCCCcEEEEecCCC
Q psy14299          8 LPGGSISNMYSICLARYRLDPDTKRKGLSHLPPLCMFTSE-DSHYSML-----------KAAHWLGIGMDNVIRVKTNER   75 (448)
Q Consensus         8 t~ggT~an~~al~~a~~~~~~~~~~~G~~~~~~~~Vl~~~-~~H~s~~-----------~~~~~~g~~~~~v~~v~~~~~   75 (448)
                      ++|||+||..++.+..+              |++.|++++ ..|....           ..++..|+   +++.++. ++
T Consensus        98 ~~sGt~A~~~al~all~--------------pGD~Vl~~~~~~y~~~~~~~g~~~~~~~~~l~~~G~---~~~~v~~-~~  159 (427)
T 3hvy_A           98 FVNGTHAIGAALFGNLR--------------PNDTMMSICGMPYDTLHDIIGMDDSKKVGSLREYGV---KYKMVDL-KD  159 (427)
T ss_dssp             CCSHHHHHHHHHHHTCC--------------TTCEEEECSSSCCGGGHHHHTCCTTCCSCCTGGGTC---EEEECCC-BT
T ss_pred             CCcHHHHHHHHHHHhcC--------------CCCEEEEeCCCCchhHHHHhccccchhhhHHHHcCC---EEEEecC-CC
Confidence            79999999888766433              677888887 6666544           23344566   7888888 78


Q ss_pred             CCcCHHHHHHHHHHhhhcCCCcEEEEEec----cCCccccccCHHHHHHHHHH--cCCEEEEecccccccccccchhhhh
Q psy14299         76 GQMICSFLEQTIQTSLAEKKIPLFVNATA----GTTVLGAFDPLDEIATVCEK--YDLWMHVDACWGGSLIFSEKYSFVL  149 (448)
Q Consensus        76 g~id~e~Le~~l~~~~~~~~~~~lVv~~~----~~t~tG~~~~l~~I~~ia~~--~g~~l~VD~A~~~~~~~~~~~~~~~  149 (448)
                      +.+|+++|++++++    +.++++|++++    +++++|.+.|+++|+++||+  +|++++||++|+.+........   
T Consensus       160 ~~~d~e~l~~~i~~----~~~tklV~i~~s~gyp~nptg~v~dl~~i~~ia~~~~~g~~livD~a~~~~~~~~~p~~---  232 (427)
T 3hvy_A          160 GKVDINTVKEELKK----DDSIKLIHIQRSTGYGWRKSLRIAEIAEIIKSIREVNENVIVFVDNCYGEFVEEKEPTD---  232 (427)
T ss_dssp             TBCCHHHHHHHHHH----CTTEEEEEEESSCCSSSSCCCCHHHHHHHHHHHHHHCSSSEEEEECTTCTTTSSSCGGG---
T ss_pred             CCcCHHHHHHHhhC----CCCCEEEEEECCCCCCCCccccHHHHHHHHHHHHHhCCCCEEEEECCccccccCCCCcc---
Confidence            89999999999974    12589999999    99999999999999999999  8999999999987763222111   


Q ss_pred             cCCCCccEEEECCccccCC---CCceEEEEEeccchhhh
Q psy14299        150 KGINRANSVSWNPHKMLGA---PLQCSILLIKEKGLLHQ  185 (448)
Q Consensus       150 ~~~~~aD~~~~s~hK~l~~---P~g~G~l~vr~~~~~~~  185 (448)
                         ..+|+++.|+||++++   |.| |+++.+ +++...
T Consensus       233 ---~gaDiv~~S~sK~lgg~g~~~G-G~i~~~-~~li~~  266 (427)
T 3hvy_A          233 ---VGADIIAGSLIKNIGGGIATTG-GYIAGK-EEYVTQ  266 (427)
T ss_dssp             ---GTCSEEEEETTSGGGTTTCCSC-EEEEEC-HHHHHH
T ss_pred             ---cCCeEEEECCcccccccccceE-EEEEEC-HHHHHH
Confidence               1479999999999987   443 666664 444444

>2zy4_A L-aspartate beta-decarboxylase; pyridoxal 5'-phosphate, aminotransferase, lyase; HET: PLP; 2.00A {Alcaligenes faecalis subsp} PDB: 2zy3_A* 2zy5_A* 3fdd_A* 2zy2_A*

Probab=99.59  E-value=6.6e-14  Score=147.82  Aligned_cols=161  Identities=10%  Similarity=0.073  Sum_probs=114.7

Q ss_pred             cEEEeCcHHHHHHHHHHHHHHh-cCCcccccCCCCCCCeEEEecCCCchHHHHHHHHhCCCCCcEEEEecCCC--CCcCH
Q psy14299          4 KPFLLPGGSISNMYSICLARYR-LDPDTKRKGLSHLPPLCMFTSEDSHYSMLKAAHWLGIGMDNVIRVKTNER--GQMIC   80 (448)
Q Consensus         4 ~g~~t~ggT~an~~al~~a~~~-~~~~~~~~G~~~~~~~~Vl~~~~~H~s~~~~~~~~g~~~~~v~~v~~~~~--g~id~   80 (448)
                      ..++|+|+++++.+++.+...+ +.          .+++.|+++...|..+...+.+.+.+. +++.++.+++  +.+|+
T Consensus       167 ~I~~t~G~~eal~~~~~~l~~~~l~----------~~Gd~Vlv~~P~y~~~~~~~~~~~~g~-~~~~v~~~~~~~~~~d~  235 (546)
T 2zy4_A          167 NLFAVEGGTAAMAYIFESLKLNGLL----------KAGDKVAIGMPVFTPYIEIPELAQYAL-EEVAINADPSLNWQYPD  235 (546)
T ss_dssp             EEEEEEHHHHHHHHHHHHHHHTTSS----------CTTCEEEEEESCCHHHHHHHHSTTSCC-EEEEEECBGGGTTBCCH
T ss_pred             eEEEECCHHHHHHHHHHHhhhhhcC----------CCCCEEEEeCCCCccHHHHHHHcCCCc-EEEEEecCcccCCCCCH
Confidence            5789999999988877654211 11          266788999999999998877665332 5788887654  46999


Q ss_pred             HHHHHHHHHhhhcCCCcEEEEEeccCCccccccC---HHHHHHHH--HHcCCEEEEecccccccccccchhhhhcCCCCc
Q psy14299         81 SFLEQTIQTSLAEKKIPLFVNATAGTTVLGAFDP---LDEIATVC--EKYDLWMHVDACWGGSLIFSEKYSFVLKGINRA  155 (448)
Q Consensus        81 e~Le~~l~~~~~~~~~~~lVv~~~~~t~tG~~~~---l~~I~~ia--~~~g~~l~VD~A~~~~~~~~~~~~~~~~~~~~a  155 (448)
                      ++|++.+.      .++++|++++++|+||.+.+   +++|.++|  +++|+++++|++|+........... .  ....
T Consensus       236 ~~l~~~~~------~~~k~v~l~~p~NPtG~~~~~~~l~~l~~~a~~~~~~~~ii~De~y~~~~~~~~s~~~-~--~~~~  306 (546)
T 2zy4_A          236 SELDKLKD------PAIKIFFCVNPSNPPSVKMDQRSLERVRNIVAEHRPDLMILTDDVYGTFADDFQSLFA-I--CPEN  306 (546)
T ss_dssp             HHHGGGGS------TTEEEEEEESSCSSSCBCCCHHHHHHHHHHHHHTCTTCEEEEECTTGGGSTTCCCHHH-H--CGGG
T ss_pred             HHHHHhhC------CCCeEEEEECCCCCCCccCCHHHHHHHHHHHHhccCCcEEEEeCcchhhcccCcCHHH-h--CCCC
Confidence            99988763      25889999999999998876   56678888  7899999999999865431111111 1  1124


Q ss_pred             cEEEECCccccCCCC-ceEEEEEeccchhh
Q psy14299        156 NSVSWNPHKMLGAPL-QCSILLIKEKGLLH  184 (448)
Q Consensus       156 D~~~~s~hK~l~~P~-g~G~l~vr~~~~~~  184 (448)
                      ++++.|++|+++.|. -+|+++..++++..
T Consensus       307 ~i~~~S~SK~~g~~GlRiG~~~~~~~~l~~  336 (546)
T 2zy4_A          307 TLLVYSFSKYFGATGWRLGVVAAHQQNVFD  336 (546)
T ss_dssp             EEEEEESTTTTTCGGGCEEEEEEESSCHHH
T ss_pred             EEEEEeCccccCCCCcceEEEEECCHHHHH
Confidence            688899999987552 37888886653433

>2epj_A Glutamate-1-semialdehyde 2,1-aminomutase; PLP enzyme, GSA, structural genomics, NPPSFA; HET: PMP; 1.70A {Aeropyrum pernix} PDB: 2zsl_A* 2zsm_A*

Probab=99.58  E-value=3.9e-14  Score=144.85  Aligned_cols=153  Identities=14%  Similarity=0.027  Sum_probs=99.5

Q ss_pred             cEEEeCcHHHHHHHHHHHHHHhcCCcccccCCCCCCCeEEEecCCCchHHHHHHH-------------HhCCCC---CcE
Q psy14299          4 KPFLLPGGSISNMYSICLARYRLDPDTKRKGLSHLPPLCMFTSEDSHYSMLKAAH-------------WLGIGM---DNV   67 (448)
Q Consensus         4 ~g~~t~ggT~an~~al~~a~~~~~~~~~~~G~~~~~~~~Vl~~~~~H~s~~~~~~-------------~~g~~~---~~v   67 (448)
                      .++||+|||++|..++.++|...           .++.+|+.+...|.....+..             ..|+..   ..+
T Consensus       114 ~v~~~~sgseA~~~al~~ar~~~-----------~~~~vi~~~~~yhg~~~~~~~~~~~~~~~~~~p~~~g~~~~~~~~~  182 (434)
T 2epj_A          114 MIRFVNSGTEATMTAIRLARGYT-----------GRDLILKFDGCYHGSHDAVLVAAGSAAAHYGVPTSAGVPEAVARLT  182 (434)
T ss_dssp             EEEEESSHHHHHHHHHHHHHHHH-----------CCCEEEEEETCCCCSSGGGSEECC------CEESSTTCCHHHHTTE
T ss_pred             EEEEeCCHHHHHHHHHHHHHHhh-----------CCCeEEEEcCCcCCCCHHHHHhcCCCccccCCCCCCCCCCcccCce
Confidence            47899999999999998876421           134555555555543221110             012210   135


Q ss_pred             EEEecCCCCCcCHHHHHHHHHHhhhcCCCcEEEEEeccCCccccccC----HHHHHHHHHHcCCEEEEeccccccccccc
Q psy14299         68 IRVKTNERGQMICSFLEQTIQTSLAEKKIPLFVNATAGTTVLGAFDP----LDEIATVCEKYDLWMHVDACWGGSLIFSE  143 (448)
Q Consensus        68 ~~v~~~~~g~id~e~Le~~l~~~~~~~~~~~lVv~~~~~t~tG~~~~----l~~I~~ia~~~g~~l~VD~A~~~~~~~~~  143 (448)
                      ..+|.+     |+++|++++++.   +.++++|+++...+++|.+.|    +++|.++|++||+++++|++|++. ....
T Consensus       183 ~~~~~~-----d~~~le~~l~~~---~~~~~~vi~ep~~~~~G~~~~~~~~l~~l~~l~~~~g~~lI~DEv~~g~-~~g~  253 (434)
T 2epj_A          183 LVTPYN-----DVEALERVFAEY---GDRIAGVIVEPVIANAGVIPPRREFLAALQRLSRESGALLILDEVVTGF-RLGL  253 (434)
T ss_dssp             EEEETT-----CHHHHHHHHHHH---GGGEEEEEECSSBCSSSCBCCCHHHHHHHHHHHHHHTCEEEEEETTTTT-TSST
T ss_pred             EecCCC-----CHHHHHHHHHhC---CCCEEEEEEeCCcCCCCccCCCHHHHHHHHHHHHHcCCEEEEEcchhce-eCCc
Confidence            566653     899999999752   124677888777777999888    999999999999999999999843 2111


Q ss_pred             chhhhhcCCCCccEEEECCccccCCCCceEEEEEec
Q psy14299        144 KYSFVLKGINRANSVSWNPHKMLGAPLQCSILLIKE  179 (448)
Q Consensus       144 ~~~~~~~~~~~aD~~~~s~hK~l~~P~g~G~l~vr~  179 (448)
                      .......++ ..|+++  ++|++++...+|+++.++
T Consensus       254 ~~~~~~~~~-~~di~s--~sK~l~~G~~~G~v~~~~  286 (434)
T 2epj_A          254 EGAQGYFNI-EGDIIV--LGKIIGGGFPVGAVAGSR  286 (434)
T ss_dssp             THHHHHHTC-CCSEEE--EEGGGGTTSSCEEEEECH
T ss_pred             chhhHHhCC-CCCeee--ecchhcCCcceeeeeecH
Confidence            111111122 367764  469988744578888765

>3bwn_A AT1G70560, L-tryptophan aminotransferase; auxin synthesis, pyridoxal-5'- phosphate, indole-3-pyruvate; HET: LLP PMP PHE; 2.25A {Arabidopsis thaliana} PDB: 3bwo_A*

Probab=99.58  E-value=5.3e-14  Score=142.23  Aligned_cols=139  Identities=9%  Similarity=0.037  Sum_probs=97.0

Q ss_pred             cEEEeCcHHHHHHHHHHHHHHhcCCcccccCCCCCCCe----EEEecCCCchHHHHHHHHhCCCCCcEEEEecCCCCCcC
Q psy14299          4 KPFLLPGGSISNMYSICLARYRLDPDTKRKGLSHLPPL----CMFTSEDSHYSMLKAAHWLGIGMDNVIRVKTNERGQMI   79 (448)
Q Consensus         4 ~g~~t~ggT~an~~al~~a~~~~~~~~~~~G~~~~~~~----~Vl~~~~~H~s~~~~~~~~g~~~~~v~~v~~~~~g~id   79 (448)
                      ..++|+|+++++.+++.+...              +++    .|+++...|.++...++..|.   +++.++.+.++ ++
T Consensus        93 ~i~~t~G~~~al~~~~~~l~~--------------~Gd~~~~~Vlv~~P~y~~~~~~~~~~g~---~~~~~~~d~~~-l~  154 (391)
T 3bwn_A           93 YIVVGTGSTQLCQAAVHALSS--------------LARSQPVSVVAAAPFYSTYVEETTYVRS---GMYKWEGDAWG-FD  154 (391)
T ss_dssp             EEEEEEHHHHHHHHHHHHHHH--------------TSSSSSEEEEECSSCCTHHHHHHHTTCB---TTEEEEEESTT-CC
T ss_pred             eEEEeCChHHHHHHHHHHhcC--------------CCCCCcceEEEcCCCchhHHHHHHHcCC---eEEEecCCHHH-cC
Confidence            589999999999888877665              455    799999999999999998888   67777776432 11


Q ss_pred             HHHHHHHHHHhhhcCCCcEEEEEeccCCccccccCHHHHHHHHHHcCCEEEEecccccccccccchhhhhcCCCCccEEE
Q psy14299         80 CSFLEQTIQTSLAEKKIPLFVNATAGTTVLGAFDPLDEIATVCEKYDLWMHVDACWGGSLIFSEKYSFVLKGINRANSVS  159 (448)
Q Consensus        80 ~e~Le~~l~~~~~~~~~~~lVv~~~~~t~tG~~~~l~~I~~ia~~~g~~l~VD~A~~~~~~~~~~~~~~~~~~~~aD~~~  159 (448)
                               .     .++++|++++++|+||.+.+  +|++-++++++++++|++|+....  ..    +......++++
T Consensus       155 ---------~-----~~~k~v~l~~p~NPtG~~~~--~l~~~~~~~~~~ii~De~y~~~~~--~~----l~~~~~~~i~~  212 (391)
T 3bwn_A          155 ---------K-----KGPYIELVTSPNNPDGTIRE--TVVNRPDDDEAKVIHDFAYYWPHY--TP----ITRRQDHDIML  212 (391)
T ss_dssp             ---------C-----CSCEEEEEESSCTTTCCCCC--CCC-----CCCEEEEECTTCSTTT--SC----CCCCBCCSEEE
T ss_pred             ---------C-----CCCEEEEECCCCCCCchhHH--HHHHHhhcCCCEEEEeCCCCCCCC--Cc----cccCCCCeEEE
Confidence                     1     25789999999999999876  555422333499999999984211  00    11112357899


Q ss_pred             ECCccccCCCC-ceEEEEEeccch
Q psy14299        160 WNPHKMLGAPL-QCSILLIKEKGL  182 (448)
Q Consensus       160 ~s~hK~l~~P~-g~G~l~vr~~~~  182 (448)
                      .|++|.++.|. -+|++++.++++
T Consensus       213 ~S~SK~~g~~GlRiG~~~~~~~~l  236 (391)
T 3bwn_A          213 FTFSKITGHAGSRIGWALVKDKEV  236 (391)
T ss_dssp             EEHHHHHSCGGGCEEEEEECCHHH
T ss_pred             EechhhcCCCccceEEEEecCHHH
Confidence            99999887442 248877744443

>2cy8_A D-phgat, D-phenylglycine aminotransferase; structural genomics, NPPSFA, national PROJ protein structural and functional analyses; 2.30A {Pseudomonas stutzeri}

Probab=99.56  E-value=2.7e-13  Score=139.42  Aligned_cols=153  Identities=14%  Similarity=0.020  Sum_probs=94.4

Q ss_pred             cEEEeCcHHHHHHHHHHHHHHhcCCcccccCCCCCCCeEEEecCCCchHHHHHHHH----------hCCCC---CcEEEE
Q psy14299          4 KPFLLPGGSISNMYSICLARYRLDPDTKRKGLSHLPPLCMFTSEDSHYSMLKAAHW----------LGIGM---DNVIRV   70 (448)
Q Consensus         4 ~g~~t~ggT~an~~al~~a~~~~~~~~~~~G~~~~~~~~Vl~~~~~H~s~~~~~~~----------~g~~~---~~v~~v   70 (448)
                      .++||+|||+|+..++.+++...           .++.+|+.+...|.........          .|+..   ..+..+
T Consensus       115 ~v~~~~gg~eA~~~al~~ar~~~-----------~~~~vi~~~~~yhg~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~  183 (453)
T 2cy8_A          115 KLRFTGSGTETTLLALRVARAFT-----------GRRMILRFEGHYHGWHDFSASGYNSHFDGQPAPGVLPETTANTLLI  183 (453)
T ss_dssp             EEEEESCHHHHHHHHHHHHHHHH-----------CCCEEEEECC----------------------------CGGGEEEE
T ss_pred             EEEEeCCHHHHHHHHHHHHHHhh-----------CCCEEEEEcCCcCCCchhhHhhcCCccCCCcCCCCCccccCceeec
Confidence            47899999999999998876421           1445566555555333222111          12210   124444


Q ss_pred             ecCCCCCcCHHHHHHHHHHhhhcCCCcEEEEEeccCCccccccC----HHHHHHHHHHcCCEEEEecccccccccccchh
Q psy14299         71 KTNERGQMICSFLEQTIQTSLAEKKIPLFVNATAGTTVLGAFDP----LDEIATVCEKYDLWMHVDACWGGSLIFSEKYS  146 (448)
Q Consensus        71 ~~~~~g~id~e~Le~~l~~~~~~~~~~~lVv~~~~~t~tG~~~~----l~~I~~ia~~~g~~l~VD~A~~~~~~~~~~~~  146 (448)
                      +.     .|+++|++++++.   +.++++|+++...+++|.+.|    +++|.++|++||+++++|++|++. .......
T Consensus       184 ~~-----~d~~~le~~l~~~---~~~~~~vi~ep~~~~tG~~~~~~~~l~~l~~l~~~~g~~lI~DEv~~g~-~~g~~~~  254 (453)
T 2cy8_A          184 RP-----DDIEGMREVFANH---GSDIAAFIAEPVGSHFGVTPVSDSFLREGAELARQYGALFILDEVISGF-RVGNHGM  254 (453)
T ss_dssp             CT-----TCHHHHHHHHHHH---GGGEEEEEECSSEHHHHTEECCHHHHHHHHHHHHHTTCEEEEECTTTTT-TTCTTHH
T ss_pred             CC-----CCHHHHHHHHHhc---CCCEEEEEECCCCCCCCCcCCCHHHHHHHHHHHHHcCCEEEEecCcccc-ccCchhh
Confidence            43     2899999999752   124677777777677998887    999999999999999999999843 2211111


Q ss_pred             hhhcCCCCccEEEECCccccCCCCceEEEEEec
Q psy14299        147 FVLKGINRANSVSWNPHKMLGAPLQCSILLIKE  179 (448)
Q Consensus       147 ~~~~~~~~aD~~~~s~hK~l~~P~g~G~l~vr~  179 (448)
                      ....++ ..|++  ++.|+++++..+|+++.++
T Consensus       255 ~~~~~~-~~di~--s~sK~l~~G~~~G~v~~~~  284 (453)
T 2cy8_A          255 QALLDV-QPDLT--CLAKASAGGLPGGILGGRE  284 (453)
T ss_dssp             HHHHTC-CCSEE--EEEGGGGTTSSCEEEEECH
T ss_pred             hHHhCC-CCcEE--EEChhhhCCcceEEEechH
Confidence            111222 25766  4569998766789888865

>3ht4_A Aluminum resistance protein; lyase, putative cystathionine BEAT-lyase, aluminium resistance protein, Q81A77_baccr, NESG, BCR213; 2.90A {Bacillus cereus atcc 14579}

Probab=99.55  E-value=4.1e-14  Score=145.11  Aligned_cols=147  Identities=14%  Similarity=0.106  Sum_probs=114.9

Q ss_pred             eCcHHHHHHHHHHHHHHhcCCcccccCCCCCCCeEEEecC-CCchHHHHHHHH----------hCCCCCcEEEEecCCCC
Q psy14299          8 LPGGSISNMYSICLARYRLDPDTKRKGLSHLPPLCMFTSE-DSHYSMLKAAHW----------LGIGMDNVIRVKTNERG   76 (448)
Q Consensus         8 t~ggT~an~~al~~a~~~~~~~~~~~G~~~~~~~~Vl~~~-~~H~s~~~~~~~----------~g~~~~~v~~v~~~~~g   76 (448)
                      +++||+||..++.+..+              +++.|+++. ..|.++...+.+          .|.   +++.++.++++
T Consensus        89 ~~sGt~Ai~~al~al~~--------------~Gd~Vl~~~~~~y~~~~~~~~l~g~~~~~~~~~G~---~~~~v~~~~~~  151 (431)
T 3ht4_A           89 IISGTHAISTALFGILR--------------PGDELLYITGKPYDTLEEIVGVRGKGVGSFKEYNI---GYNAVPLTEGG  151 (431)
T ss_dssp             SCSHHHHHHHHHHTTCC--------------TTCEEEECSSSCCTTHHHHTTSSSCSSSCSGGGTC---EEEECCBCTTS
T ss_pred             eeCHHHHHHHHHHHhCC--------------CCCEEEEeCCCCchhHHHHHhhcccccchHHHcCC---EEEEeCCCCCC
Confidence            45889999888765432              567788887 889888876643          456   78999998899


Q ss_pred             CcCHHHHHHHHHHhhhcCCCcEEEEEec----cCCccccccCHHHHHHHHHH--cCCEEEEecccccccccccchhhhhc
Q psy14299         77 QMICSFLEQTIQTSLAEKKIPLFVNATA----GTTVLGAFDPLDEIATVCEK--YDLWMHVDACWGGSLIFSEKYSFVLK  150 (448)
Q Consensus        77 ~id~e~Le~~l~~~~~~~~~~~lVv~~~----~~t~tG~~~~l~~I~~ia~~--~g~~l~VD~A~~~~~~~~~~~~~~~~  150 (448)
                      .+|+++|++++++      ++++|+++.    +++++|...|+++|+++|++  +|++++||++|+.+....+..     
T Consensus       152 ~~d~e~l~~~l~~------~tk~V~i~~sp~np~~~~~~~~~l~~i~~la~~~~~~~~livDea~~~~~~~~~~~-----  220 (431)
T 3ht4_A          152 LVDFEAVAAAIHS------NTKMIGIQRSKGYATRPSFTISQIKEMIAFVKEIKPDVVVFVDNCYGEFIEEQEPC-----  220 (431)
T ss_dssp             SBCHHHHHHHCCT------TEEEEEEECSCTTSSSCCCCHHHHHHHHHHHHHHCTTCEEEEECTTCTTSSSCCGG-----
T ss_pred             CcCHHHHHhhcCC------CCeEEEEECCCCCCCCCcCCHHHHHHHHHHHHhhCCCCEEEEeCCChhhccCCCcc-----
Confidence            9999999999964      588999997    77778889999999999999  999999999999876432211     


Q ss_pred             CCCCccEEEECCccccCC---CCceEEEEEeccchhhh
Q psy14299        151 GINRANSVSWNPHKMLGA---PLQCSILLIKEKGLLHQ  185 (448)
Q Consensus       151 ~~~~aD~~~~s~hK~l~~---P~g~G~l~vr~~~~~~~  185 (448)
                      .. .+|+++.|+||++++   |.| |+++.++ ++...
T Consensus       221 ~~-g~Di~~~S~sK~lgg~~~~~G-G~v~~~~-~li~~  255 (431)
T 3ht4_A          221 HV-GADLMAGSLIKNPGGGIVKTG-GYIVGKE-QYVEA  255 (431)
T ss_dssp             GT-TCSEEEEETTSGGGTTTCSSC-EEEEECH-HHHHH
T ss_pred             cc-CCeEEEcCccccCCCCCCCce-EEEEecH-HHHHH
Confidence            11 379999999999766   666 7777654 44333

>3ou5_A Serine hydroxymethyltransferase, mitochondrial; structural genomics, STRU genomics consortium, SGC; 2.04A {Homo sapiens}

Probab=99.52  E-value=1.8e-12  Score=130.94  Aligned_cols=297  Identities=16%  Similarity=0.134  Sum_probs=175.2

Q ss_pred             eCcHHHHHHHHHHHHHHhcCCcccccCCCCCCCeEEEecCCCch---HHH-----HHHHHhCCCCCcEEEEecC-CCCCc
Q psy14299          8 LPGGSISNMYSICLARYRLDPDTKRKGLSHLPPLCMFTSEDSHY---SML-----KAAHWLGIGMDNVIRVKTN-ERGQM   78 (448)
Q Consensus         8 t~ggT~an~~al~~a~~~~~~~~~~~G~~~~~~~~Vl~~~~~H~---s~~-----~~~~~~g~~~~~v~~v~~~-~~g~i   78 (448)
                      ..+|+.||+.+..+..+              |++.|+.-+..|-   +--     ......|.-- +....+++ +++.|
T Consensus       126 P~SGs~AN~avy~All~--------------PGD~ilg~~l~~GGHltHg~~~~~~~v~~sg~~~-~~~~Y~vd~~t~~I  190 (490)
T 3ou5_A          126 PYSGSPANLAVYTALLQ--------------PHDRIMGLDLPDGGHLTHGYMSDVKRISATSIFF-ESMPYKLNPKTGLI  190 (490)
T ss_dssp             CSSHHHHHHHHHHHHCC---------------CCCEECBC-----------------------------CBCEETTTTEE
T ss_pred             cCCHHHHHHHHHHHHcC--------------CCCEEEecccCCCCcccccccCCCcccccccccc-cccccccCCCCCcc
Confidence            46899999988877665              5666766555442   211     1122223311 23333444 46899


Q ss_pred             CHHHHHHHHHHhhhcCCCcEEEEEeccCCccccccCHHHHHHHHHHcCCEEEEecccccccccccchhhhhcCCCCccEE
Q psy14299         79 ICSFLEQTIQTSLAEKKIPLFVNATAGTTVLGAFDPLDEIATVCEKYDLWMHVDACWGGSLIFSEKYSFVLKGINRANSV  158 (448)
Q Consensus        79 d~e~Le~~l~~~~~~~~~~~lVv~~~~~t~tG~~~~l~~I~~ia~~~g~~l~VD~A~~~~~~~~~~~~~~~~~~~~aD~~  158 (448)
                      |.+++++...+.     +|++|++-...  .--..|++++.+||++.|++|++|.||-.|......++.-+   ..+|++
T Consensus       191 Dyd~~~~~A~~~-----kPklIi~G~Sa--Y~r~id~~~~reIAd~vGA~Lm~DmAHiaGLVA~g~~psP~---~~ADvV  260 (490)
T 3ou5_A          191 DYNQLALTARLF-----RPRLIIAGTSA--YARLIDYARMREVCDEVKAHLLADMAHISGLVAAKVIPSPF---KHADIV  260 (490)
T ss_dssp             CHHHHHHHHHHH-----CCSEEEECCSS--CCSCCCHHHHHHHHHHHTCEEEEECGGGHHHHHTTSSCCGG---GTCSEE
T ss_pred             cHHHHHHHHhhc-----CCCeEEECCcc--CccccCHHHHHHHHhhcccEEEechhhhhhhhcccccCCcc---ccceEE
Confidence            999999999874     68888875533  45678999999999999999999999998877544443323   358999


Q ss_pred             EECCccccCCCCceEEEEEeccchhhhhccCCcc---cccccCcccccccCCCCCcccCCCCchhHHHHHHHHHhChHHH
Q psy14299        159 SWNPHKMLGAPLQCSILLIKEKGLLHQANATAAT---YLFQQDKFYDVSFDTGDKSVQCGRKVDAFKLWLMWKARGNLGF  235 (448)
Q Consensus       159 ~~s~hK~l~~P~g~G~l~vr~~~~~~~~~~~~~~---y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~g~  235 (448)
                      +.+.||.|.+|.| |++++++...  ........   |-..........+     +++++.....               
T Consensus       261 TtTTHKTLrGPrG-G~Il~~~~~~--~~~~k~~~~~~~~~~kkin~aVFP-----g~qggp~~h~---------------  317 (490)
T 3ou5_A          261 TTTTHKTLRGARS-GLIFYRKGVK--AVDPKTGREIPYTFEDRINFAVFP-----SLQGGPHNHA---------------  317 (490)
T ss_dssp             EEESSSTTCSCSC-EEEEEECSEE--EECC--CCEEECCCHHHHHHHHTT-----TTCSSCCHHH---------------
T ss_pred             eccccccccCCCc-eEEEeccccc--cccccccchhHHHHHHHHHhhcCc-----cccccchHHH---------------
Confidence            9999999999984 5556655310  00000000   0000000000000     0111111100               


Q ss_pred             HHHHHHhhhhccCCCccchhhhhhhhhhhhhhhhhhhhhhhccccccccccCCCCCccccccchhhHHHHHHHHHhcCcc
Q psy14299        236 RHFVDNAVDCSRGSMTFSTLLCFDLQGLLHQANATAATYLFQQDKFYDVSFDTGDKSVQCGRKVDAFKLWLMWKARGNLG  315 (448)
Q Consensus       236 ~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G  315 (448)
                                                                                       +.+.++++......-
T Consensus       318 -----------------------------------------------------------------IAAkAVaf~Ea~~p~  332 (490)
T 3ou5_A          318 -----------------------------------------------------------------IAAVAVALKQACTPM  332 (490)
T ss_dssp             -----------------------------------------------------------------HHHHHHHHHHHHSHH
T ss_pred             -----------------------------------------------------------------HHHHHHHHHHHHhHh
Confidence                                                                             122334455444555


Q ss_pred             HHHHHHHHHHHHHHHHHHhhcCCCeEEeccCCceeeEEEEeeccCCCccccchhhhhhhhhhhHHHHHHHHhCCcEEEEe
Q psy14299        316 FRHFVDNAVDCSRYFLSQISQRPGFRLVIPEFQCTNICFWFIPVSLRDKVEDETWWSTLSKVAPRIKEKLVLGGTLMIGY  395 (448)
Q Consensus       316 ~~~~~~~~~~l~~~~~~~L~~~pg~~l~~~~~~~~~v~f~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~L~~~g~~~~~~  395 (448)
                      +++..++..++++.+.+.|.+. ||+++.+....+.+.+.+.+.++++               .+..+.|.+.| |.+.-
T Consensus       333 fk~Ya~qVv~NAkaLA~~L~~~-G~~vvsGgTdnHlvLvDl~~~g~tG---------------~~ae~~Le~ag-ItvNk  395 (490)
T 3ou5_A          333 FREYSLQVLKNARAMADALLER-GYSLVSGGTDNHLVLVDLRPKGLDG---------------ARAERVLELVS-ITANK  395 (490)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHT-TCEEGGGSCSSSEEEEECGGGTCCH---------------HHHHHHHHHTT-EECEE
T ss_pred             HHHHHHHHHHHHHHHHHHHHhC-CCeeecCCCCceEEEEeccccCCCH---------------HHHHHHHHHcC-cEECC
Confidence            6778888899999999999998 9999844456677777766666553               24556666777 55543


Q ss_pred             eecCC-c--ccccEEEEEecC--CCCCCHHHHHHHHHHHHHHHH
Q psy14299        396 QPLQH-R--NLHNFFRLVTTC--HPASSRQDMDYAIDQIELRGA  434 (448)
Q Consensus       396 ~~~~g-~--~~~~~lRis~~~--~~~~t~edid~l~~al~~~~~  434 (448)
                      ....+ +  ..++.||++.-.  .....++|++.+.+.|.++..
T Consensus       396 N~iP~D~sp~~~SGiRiGTpa~TtRG~~e~dm~~IA~~I~~~l~  439 (490)
T 3ou5_A          396 NTCPGDRSAITPGGLRLGAPALTSRQFREDDFRRVVDFIDEGVN  439 (490)
T ss_dssp             ECCTTCCCSSSCSEEEEESHHHHHTTCCHHHHHHHHHHHHHHHH
T ss_pred             CCCCCCCCCCCCCeeEECCHHHHhCCCCHHHHHHHHHHHHHHHH
Confidence            32221 1  113579998731  223567899999988887653

>2e7u_A Glutamate-1-semialdehyde 2,1-aminomutase; PLP enzyme, GSA, structural genomics, NPPSFA; HET: PMP; 1.90A {Thermus thermophilus}

Probab=99.49  E-value=4.7e-13  Score=136.36  Aligned_cols=152  Identities=15%  Similarity=0.091  Sum_probs=97.8

Q ss_pred             cEEEeCcHHHHHHHHHHHHHHhcCCcccccCCCCCCCeEEEecCCCchHHHHHHHH-------------hCCCC---CcE
Q psy14299          4 KPFLLPGGSISNMYSICLARYRLDPDTKRKGLSHLPPLCMFTSEDSHYSMLKAAHW-------------LGIGM---DNV   67 (448)
Q Consensus         4 ~g~~t~ggT~an~~al~~a~~~~~~~~~~~G~~~~~~~~Vl~~~~~H~s~~~~~~~-------------~g~~~---~~v   67 (448)
                      .++||+|||+++..++..+|...           .++.+|+.+...|.....+...             .|+..   ..+
T Consensus       110 ~v~~~~~g~ea~~~al~~ar~~~-----------~~~~vi~~~~~yhg~~~~~~~~~~~~~~~~~~p~~~g~~~~~~~~~  178 (424)
T 2e7u_A          110 LVRFVNSGTEATMSALRLARGYT-----------GRPYIVKFRGNYHGHADGLLVEAGSGALTLGVPSSAGVPEEYAKLT  178 (424)
T ss_dssp             EEEEESSHHHHHHHHHHHHHHHH-----------CCCEEEEETTCCCCCCGGGSEECCSSSCCBCEESSTTCCHHHHTTE
T ss_pred             EEEEeCCHHHHHHHHHHHHHHhh-----------CCCEEEEECCCcCCCcHHHHHhcCCcccccCCCCCCCCCCccCCce
Confidence            47899999999999998865431           1455566666666433222111             12100   135


Q ss_pred             EEEecCCCCCcCHHHHHHHHHHhhhcCCCcEEEEEeccCCccccccC----HHHHHHHHHHcCCEEEEeccccccccccc
Q psy14299         68 IRVKTNERGQMICSFLEQTIQTSLAEKKIPLFVNATAGTTVLGAFDP----LDEIATVCEKYDLWMHVDACWGGSLIFSE  143 (448)
Q Consensus        68 ~~v~~~~~g~id~e~Le~~l~~~~~~~~~~~lVv~~~~~t~tG~~~~----l~~I~~ia~~~g~~l~VD~A~~~~~~~~~  143 (448)
                      ..+|.+     |+++|++++++.   +.++++|+++...+++|.+.|    +++|.++ ++||+++++|++|++. ....
T Consensus       179 ~~~~~~-----d~~~le~~l~~~---~~~~~~vi~ep~~~~~G~~~~~~~~l~~l~~l-~~~g~~lI~DEv~~g~-~~g~  248 (424)
T 2e7u_A          179 LVLEYN-----DPEGLREVLKRR---GEEIAAIIFEPVVGNAGVLVPTEDFLKALHEA-KAYGVLLIADEVMTGF-RLAF  248 (424)
T ss_dssp             EEECTT-----CHHHHHHHHHHH---GGGEEEEEECSSBCTTSCBCCCHHHHHHHHHG-GGGTCEEEEECTTTTT-TSST
T ss_pred             EeCCCC-----CHHHHHHHHHhC---CCCEEEEEEeCCCCCCCCcCCCHHHHHHHHHH-HHcCCEEEEecCcccc-ccch
Confidence            555542     899999999752   124667777666666898887    9999999 9999999999999843 2211


Q ss_pred             chhhhhcCCCCccEEEECCccccCCCCceEEEEEec
Q psy14299        144 KYSFVLKGINRANSVSWNPHKMLGAPLQCSILLIKE  179 (448)
Q Consensus       144 ~~~~~~~~~~~aD~~~~s~hK~l~~P~g~G~l~vr~  179 (448)
                      .......++ ..|++  +++|++++...+|+++.++
T Consensus       249 ~~~~~~~~~-~~di~--s~sK~l~~G~~~G~~~~~~  281 (424)
T 2e7u_A          249 GGATELLGL-KPDLV--TLGKILGGGLPAAAYAGRR  281 (424)
T ss_dssp             THHHHHHTC-CCSEE--EECGGGGTTSSCEEEEECH
T ss_pred             hHHHHHhCC-Ccchh--hhhhhhhCCcceEEEEEcH
Confidence            111111222 25766  5579998755688887765

>4ao9_A Beta-phenylalanine aminotransferase; HET: PLP; 1.50A {Variovorax paradoxus} PDB: 4aoa_A*

Probab=99.44  E-value=8.8e-12  Score=128.18  Aligned_cols=153  Identities=11%  Similarity=0.019  Sum_probs=100.8

Q ss_pred             cEEEeCcHHHHHHHHHHHHHHhcCCcccccCCCCCCCeEEEecCCCchHHHHHHHHhCCC--CCcEEEEecCCCCCcCHH
Q psy14299          4 KPFLLPGGSISNMYSICLARYRLDPDTKRKGLSHLPPLCMFTSEDSHYSMLKAAHWLGIG--MDNVIRVKTNERGQMICS   81 (448)
Q Consensus         4 ~g~~t~ggT~an~~al~~a~~~~~~~~~~~G~~~~~~~~Vl~~~~~H~s~~~~~~~~g~~--~~~v~~v~~~~~g~id~e   81 (448)
                      .++|+++|||||..|+..+|..-.           ...+|......|-.........+-.  ...+..+|.+     |.+
T Consensus       145 ~v~f~~SGsEA~e~AiklAr~~tg-----------r~~ii~~~~~yHG~t~~~~~~~~~~~~~~~~~~~p~n-----d~~  208 (454)
T 4ao9_A          145 QLRFTNSGTEANLMALTAALHFTG-----------RRKIVVFSGGYHGGVLGFGARPSPTTVPFDFLVLPYN-----DAQ  208 (454)
T ss_dssp             EEEEESSHHHHHHHHHHHHHHHHT-----------CCEEEEETTCBCSTTCBBSSSBCTTSCCSEEEEECTT-----CHH
T ss_pred             EEEEeCchHHHHHHHHHHHHhccc-----------CCeEEEEeCCcCCccccccccccCccCCCCcccCCCc-----hHH
Confidence            478999999999999999987521           3345555666665332111111100  1134555554     899


Q ss_pred             HHHHHHHHhhhcCCCcEEEEEeccCCccccccC----HHHHHHHHHHcCCEEEEecccccccccccchhhhhcCCCCccE
Q psy14299         82 FLEQTIQTSLAEKKIPLFVNATAGTTVLGAFDP----LDEIATVCEKYDLWMHVDACWGGSLIFSEKYSFVLKGINRANS  157 (448)
Q Consensus        82 ~Le~~l~~~~~~~~~~~lVv~~~~~t~tG~~~~----l~~I~~ia~~~g~~l~VD~A~~~~~~~~~~~~~~~~~~~~aD~  157 (448)
                      .+++.+++.   +..+.+|++.-...+.|.+.|    +++|.++|++||+++++|+.+.+ -. ...+.....++ ..|.
T Consensus       209 ~l~~~l~~~---~~~iAavIvEPv~g~~G~~~p~~~fL~~lr~lc~~~g~lLI~DEV~tG-R~-G~~~a~e~~gv-~PDi  282 (454)
T 4ao9_A          209 TARAQIERH---GPEIAVVLVEPMQGASGCIPGQPDFLQALRESATQVGALLVFDEVMTS-RL-APHGLANKLGI-RSDL  282 (454)
T ss_dssp             HHHHHHHHT---GGGEEEEEECSEESTTTCEECCHHHHHHHHHHHHHHTCEEEEECTTGG-GG-STTCHHHHHTC-CCSE
T ss_pred             HHHHHHhhc---CCceEEEEeccccCCCCccCCchhhHHHHHHHHhhcCCEEEEECCCcC-CC-ccccchhccCC-CCcE
Confidence            999999763   224667777777777888877    99999999999999999999874 11 11111112234 3688


Q ss_pred             EEECCccccCCCCceEEEEEecc
Q psy14299        158 VSWNPHKMLGAPLQCSILLIKEK  180 (448)
Q Consensus       158 ~~~s~hK~l~~P~g~G~l~vr~~  180 (448)
                      +++  .|.+++-...|.+..+++
T Consensus       283 ~t~--gK~lggG~Piga~~~~~e  303 (454)
T 4ao9_A          283 TTL--GKYIGGGMSFGAFGGRAD  303 (454)
T ss_dssp             EEE--EGGGGTTSSCEEEEECHH
T ss_pred             EEe--ccccCCCCcceeeeeHHH
Confidence            775  677766666888877664

>2hox_A ALLIIN lyase 1; cysteine sulphoxide lyase, ALLIINASE; HET: NAG FUC BMA P1T; 1.40A {Allium sativum} SCOP: c.67.1.1 PDB: 2hor_A* 1lk9_A*

Probab=99.43  E-value=1.4e-12  Score=133.40  Aligned_cols=146  Identities=9%  Similarity=-0.050  Sum_probs=99.7

Q ss_pred             cEEEeCcHHHHHHHHHHHHHHhcCCcccccCCCCCCCeEEEecCCCchHHHHHHHHhCCCCCcEEEEecCCCCCcCHHHH
Q psy14299          4 KPFLLPGGSISNMYSICLARYRLDPDTKRKGLSHLPPLCMFTSEDSHYSMLKAAHWLGIGMDNVIRVKTNERGQMICSFL   83 (448)
Q Consensus         4 ~g~~t~ggT~an~~al~~a~~~~~~~~~~~G~~~~~~~~Vl~~~~~H~s~~~~~~~~g~~~~~v~~v~~~~~g~id~e~L   83 (448)
                      ..++|+|+|+++.+++.+.....      .+.+..+++.|+++...|..+...++..|.   +++.      +.+|+++|
T Consensus       125 ~iv~t~G~~~al~~~~~~l~~~~------~~~~~~~Gd~Vlv~~P~y~~~~~~~~~~g~---~~~~------~~~d~~~l  189 (427)
T 2hox_A          125 YIVFGVGVTQLIHGLVISLSPNM------TATPDAPESKVVAHAPFYPVFREQTKYFDK---KGYV------WAGNAANY  189 (427)
T ss_dssp             EEEEESHHHHHHHHHHHHHSCCT------TTCTTSCCEEEEECSSCCHHHHHHHHHSCB---TTEE------EEEEGGGG
T ss_pred             EEEEeCCHHHHHHHHHHHHhhcc------ccccCCCCCEEEEeCCCcccHHHHHHHcCC---eeee------ecCCHHHH
Confidence            47899999999888877651000      000002678899999999999999999888   4443      24578888


Q ss_pred             HHHHHHhhhcCCCcEEEEEeccCCccccccCHHHHHHHHHHcCCEEEEecccccccccccchhhhhcCCCCccEEEECCc
Q psy14299         84 EQTIQTSLAEKKIPLFVNATAGTTVLGAFDPLDEIATVCEKYDLWMHVDACWGGSLIFSEKYSFVLKGINRANSVSWNPH  163 (448)
Q Consensus        84 e~~l~~~~~~~~~~~lVv~~~~~t~tG~~~~l~~I~~ia~~~g~~l~VD~A~~~~~~~~~~~~~~~~~~~~aD~~~~s~h  163 (448)
                      ++++++      ++++|++++++|+||.+.+ +    +++  ++..+.|.++.......-.    +.  ...++++.|++
T Consensus       190 ~~~~~~------~~k~v~l~~p~NPtG~~~~-~----~l~--~~~~i~d~~~~~~~~s~~~----~~--~~~~i~~~S~S  250 (427)
T 2hox_A          190 VNVSNP------EQYIEMVTSPNNPEGLLRH-A----VIK--GCKSIYDMVYYWPHYTPIK----YK--ADEDILLFTMS  250 (427)
T ss_dssp             TTCSCG------GGEEEEEESSCTTTCCCCC-C----SST--TCEEEEECTTCSTTTSCCC----SC--BCCSEEEEEHH
T ss_pred             HHhhcC------CceEEEEcCCCCCcccccH-H----HHc--CCCEEEeecccCCCCCccc----cC--CCceEEEEeCh
Confidence            887743      4789999999999999988 4    233  5678888876421110000    10  23689999999


Q ss_pred             cccCCCCc--eEEEEEeccchhh
Q psy14299        164 KMLGAPLQ--CSILLIKEKGLLH  184 (448)
Q Consensus       164 K~l~~P~g--~G~l~vr~~~~~~  184 (448)
                      |.++.| |  +|+++++++++..
T Consensus       251 K~~g~~-G~RiG~~~~~~~~l~~  272 (427)
T 2hox_A          251 KFTGHS-GSRFGWALIKDESVYN  272 (427)
T ss_dssp             HHTSCG-GGCCEEEEECCHHHHH
T ss_pred             hcCCCC-CceEEEEEECCHHHHH
Confidence            988744 4  7888885554443

>3k7y_A Aspartate aminotransferase; aminotrans pyridoxal phosphate; HET: PLP; 2.80A {Plasmodium falciparum} SCOP: c.67.1.0

Probab=99.41  E-value=1.6e-11  Score=124.91  Aligned_cols=154  Identities=12%  Similarity=-0.007  Sum_probs=110.4

Q ss_pred             cEEEeCcHHHHHHHHHHHHHHhcCCcccccCCCCCCCeEEEecCCCchHHHHHHHHhCCCCCcEEEEec-CC-CCCcCHH
Q psy14299          4 KPFLLPGGSISNMYSICLARYRLDPDTKRKGLSHLPPLCMFTSEDSHYSMLKAAHWLGIGMDNVIRVKT-NE-RGQMICS   81 (448)
Q Consensus         4 ~g~~t~ggT~an~~al~~a~~~~~~~~~~~G~~~~~~~~Vl~~~~~H~s~~~~~~~~g~~~~~v~~v~~-~~-~g~id~e   81 (448)
                      ..+.|+||+.|+.+++.+....            .+ +.|+++...+..+...++..|.   +++.+|. ++ ++.+|++
T Consensus        99 ~i~~t~G~~~al~~~~~~l~~~------------~~-d~Vlv~~P~y~~~~~~~~~~g~---~~~~v~~~~~~~~~~d~~  162 (405)
T 3k7y_A           99 CTIQCIGGTGAIFVLLEFLKML------------NV-ETLYVTNPPYINHVNMIESRGF---NLKYINFFDYNLIDINYD  162 (405)
T ss_dssp             EEEEEEHHHHHHHHHHHHHHTT------------TC-CEEEEESSCCHHHHHHHHTTTC---EEEEECCEETTTTEECHH
T ss_pred             EEEEcCchHHHHHHHHHHHHhc------------CC-CEEEEeCCCCHhHHHHHHHcCC---eEEEEeccccccCCcCHH
Confidence            3589999999988887765542            26 7899999999999999999998   7888987 33 5789999


Q ss_pred             HHHHHHHHhhhcCCCcEEEEEecc-CCccccccC---HHHHHHHHHHcCCEEEEeccccccccc-cc--chhh-hhcCCC
Q psy14299         82 FLEQTIQTSLAEKKIPLFVNATAG-TTVLGAFDP---LDEIATVCEKYDLWMHVDACWGGSLIF-SE--KYSF-VLKGIN  153 (448)
Q Consensus        82 ~Le~~l~~~~~~~~~~~lVv~~~~-~t~tG~~~~---l~~I~~ia~~~g~~l~VD~A~~~~~~~-~~--~~~~-~~~~~~  153 (448)
                      +|++++.+.    .++++++++.+ +|+||...+   +++|+++|++||+++++|.+|...... .+  .... .+....
T Consensus       163 ~l~~~l~~~----~~~~~i~l~~~~~NPTG~~~s~~~~~~l~~~~~~~~~~vi~De~Y~~l~~~~~~~~~~~~~~~~~~~  238 (405)
T 3k7y_A          163 LFLNDLRNI----PNGSSVILQISCYNPCSVNIEEKYFDEIIEIVLHKKHVIIFDIAYQGFGHTNLEEDVLLIRKFEEKN  238 (405)
T ss_dssp             HHHHHHHHS----CSSCEEEECCSSCTTTCCCCCHHHHHHHHHHHHHHCCEEEEEESCTTTSSSSTTGGGHHHHHHHTTT
T ss_pred             HHHHHHHhC----CCCeEEEEeCCCCCCCCCCCCHHHHHHHHHHHHHCCeEEEEecCcccccCCCcccchHHHHHHHhcC
Confidence            999999752    23567777765 799998755   677889999999999999998754421 00  0000 011111


Q ss_pred             CccEEEECCccccCCC-CceEEEEE
Q psy14299        154 RANSVSWNPHKMLGAP-LQCSILLI  177 (448)
Q Consensus       154 ~aD~~~~s~hK~l~~P-~g~G~l~v  177 (448)
                      .-=+++.|+.|.++.| .-+|++++
T Consensus       239 ~~~i~~~S~SK~~~l~GlRiG~~~~  263 (405)
T 3k7y_A          239 IAFSVCQSFSKNMSLYGERAGALHI  263 (405)
T ss_dssp             CCEEEEEECTTTSCCTTTTEEEEEE
T ss_pred             CcEEEEeeCCccCCCccccceEEEE
Confidence            1125567899998744 45677653

>4atq_A 4-aminobutyrate transaminase; transferase; HET: PLP; 2.75A {Arthrobacter aurescens} PDB: 4atp_A*

Probab=99.35  E-value=8.3e-10  Score=113.71  Aligned_cols=162  Identities=11%  Similarity=0.024  Sum_probs=100.2

Q ss_pred             EEEeCcHHHHHHHHHHHHHHhcCCcccccCCCCCCCeEEEecCCCchHHHHHHHHhCCC----------CCcEEEEecCC
Q psy14299          5 PFLLPGGSISNMYSICLARYRLDPDTKRKGLSHLPPLCMFTSEDSHYSMLKAAHWLGIG----------MDNVIRVKTNE   74 (448)
Q Consensus         5 g~~t~ggT~an~~al~~a~~~~~~~~~~~G~~~~~~~~Vl~~~~~H~s~~~~~~~~g~~----------~~~v~~v~~~~   74 (448)
                      ++|+++|||||-.|+..||....           ...+|-.....|-...-+....+..          ...+..+|...
T Consensus       128 v~f~~sGsEA~e~AlklAr~~t~-----------r~~ii~~~~~yHG~t~~als~t~~~~~~~~~~~p~~~~~~~~p~~~  196 (456)
T 4atq_A          128 TVLFNSGAEAVENAVKVARLATG-----------RDAVVAFDHAYHGRTNLTMALTAKAMPYKTNFGPFAPEVYRMPMSY  196 (456)
T ss_dssp             EEEESSHHHHHHHHHHHHHHHHC-----------CCEEEEETTCCCCSSHHHHHHCCCCTTTTTTSCSCCSSEEEECCCC
T ss_pred             EEEeCChHHHHHHHHHHHhhhhc-----------CCeEEEEecccCCccccccccccCccccccCCCCccccceeccccc
Confidence            68999999999999999987621           3344555566665554444443321          11355566432


Q ss_pred             C------CCcCHHHHHHHHHHhhh--cCCCcEEEEEeccCCccccccC----HHHHHHHHHHcCCEEEEecccccccccc
Q psy14299         75 R------GQMICSFLEQTIQTSLA--EKKIPLFVNATAGTTVLGAFDP----LDEIATVCEKYDLWMHVDACWGGSLIFS  142 (448)
Q Consensus        75 ~------g~id~e~Le~~l~~~~~--~~~~~~lVv~~~~~t~tG~~~~----l~~I~~ia~~~g~~l~VD~A~~~~~~~~  142 (448)
                      .      ..-+.+.+++.++...+  .+..+.+|++.-.....|.+.|    +++|.++|++||+++++|+.+.+..-..
T Consensus       197 ~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~iAAvivEPiqg~gG~~~p~~~fl~~lr~lc~~~gillI~DEV~tG~GRtG  276 (456)
T 4atq_A          197 PFREENPEITGAEAAKRAITMIEKQIGGDQVAAIIIEPIQGEGGFIVPAEGFLPALSEWAKEKGIVFIADEVQSGFCRTG  276 (456)
T ss_dssp             GGGCSSTTCCHHHHHHHHHHHHHHHTCGGGEEEEEECSSBTTTTCBCCCTTHHHHHHHHHHHHTCEEEEECTTTTTTTTS
T ss_pred             ccccCCCcccHHHHHHHHHHHHHHhhcCCceEEEEeccccCCCCccccchhhhHHHHHHHhhcCCceEecccccccCCcc
Confidence            1      12245555555543211  1224566777666666676655    9999999999999999999887632211


Q ss_pred             cchhhhhcCCCCccEEEECCccccCCCCceEEEEEecc
Q psy14299        143 EKYSFVLKGINRANSVSWNPHKMLGAPLQCSILLIKEK  180 (448)
Q Consensus       143 ~~~~~~~~~~~~aD~~~~s~hK~l~~P~g~G~l~vr~~  180 (448)
                      .-+.....++ ..|+++++  |.+++-...|.+..+++
T Consensus       277 ~~~a~e~~gv-~PDivt~g--K~lggg~P~~av~~~~~  311 (456)
T 4atq_A          277 EWFAVDHEGV-VPDIITMA--KGIAGGLPLSAITGRAD  311 (456)
T ss_dssp             SSSGGGGTTC-CCSEEEEC--GGGGTTSSCEEEEEEHH
T ss_pred             ccccccccCC-CCchhhhh--hcccCcCCceeeEecHH
Confidence            1111112234 37998875  76766667788888765

>4h51_A Aspartate aminotransferase; ssgcid, structural genomics, seattle struc genomics center for infectious disease, aspartate aminotran transferase; HET: LLP; 1.85A {Leishmania major}

Probab=99.29  E-value=1e-10  Score=119.32  Aligned_cols=161  Identities=12%  Similarity=0.060  Sum_probs=111.0

Q ss_pred             EEEeCcHHHHHHHHHHHHHHhcCCcccccCCCCCCCeEEEecCCCchHHHHHHHHhCCCCCcEEEEec--CCCCCcCHHH
Q psy14299          5 PFLLPGGSISNMYSICLARYRLDPDTKRKGLSHLPPLCMFTSEDSHYSMLKAAHWLGIGMDNVIRVKT--NERGQMICSF   82 (448)
Q Consensus         5 g~~t~ggT~an~~al~~a~~~~~~~~~~~G~~~~~~~~Vl~~~~~H~s~~~~~~~~g~~~~~v~~v~~--~~~g~id~e~   82 (448)
                      .+-|.|||.|...++......+.          .|++.|++++....+.....+..|..  .+...+.  +.+..+|.+.
T Consensus       112 ~~qt~ggtga~~~a~~~l~~~~~----------~pgd~V~ip~P~w~~y~~i~~~aG~~--~V~~~~~~~~~~~~~d~~~  179 (420)
T 4h51_A          112 AVQTLSGTGAVSLGAKLLTRVFD----------AETTPIYLSDPTWPNHYGVVKAAGWK--NICTYAYYDPKTVSLNFEG  179 (420)
T ss_dssp             EEEEEHHHHHHHHHHHHHTTTSC----------TTTSCEEEEESCCTHHHHHHHHTTCC--CEEEEECEEGGGTEECHHH
T ss_pred             eeeecCchHHHHHHHHHHHHhcC----------CCCCEEEEecCCchhHHHHHHHcCCe--EEEeeccccccccCCCHHH
Confidence            45689999998888766554321          37778999999999999999999883  2433333  2356789999


Q ss_pred             HHHHHHHhhhcCCCcEEEEEeccCCccccc---cCHHHHHHHHHHcCCEEEEecccccccccc---cchhhh-hcCCCCc
Q psy14299         83 LEQTIQTSLAEKKIPLFVNATAGTTVLGAF---DPLDEIATVCEKYDLWMHVDACWGGSLIFS---EKYSFV-LKGINRA  155 (448)
Q Consensus        83 Le~~l~~~~~~~~~~~lVv~~~~~t~tG~~---~~l~~I~~ia~~~g~~l~VD~A~~~~~~~~---~~~~~~-~~~~~~a  155 (448)
                      +.+.+.+.   .+++++++.+.++|+||..   +.+++|+++|++++++++.|.+|.......   +..... ......-
T Consensus       180 ~~~~l~~~---~~~~~vll~~~p~NPtG~~~~~~~~~~i~~~~~~~~~~~~~D~~Y~~~~~~~~~~~~~~~~~~~~~~~~  256 (420)
T 4h51_A          180 MKKDILAA---PDGSVFILHQCAHNPTGVDPSQEQWNEIASLMLAKHHQVFFDSAYQGYASGSLDTDAYAARLFARRGIE  256 (420)
T ss_dssp             HHHHHHHS---CSSCEEEEESSSCTTTCCCCCHHHHHHHHHHHHHHTCEEEEEESCTTTTTSCHHHHTHHHHHHHHTTCC
T ss_pred             HHHHHhcc---CCCcEEEEeCCCCCCCCCCCCHHHHHHHHHHHHhcCceEeeehhhhhhccCCcccchHHHHhHHhhCce
Confidence            99988752   3457788888999999976   457889999999999999999987654311   111100 0001011


Q ss_pred             cEEEECCccccCCCC-ceEEEEEecc
Q psy14299        156 NSVSWNPHKMLGAPL-QCSILLIKEK  180 (448)
Q Consensus       156 D~~~~s~hK~l~~P~-g~G~l~vr~~  180 (448)
                      =+++.|+.|.++.+. -+|.+.+..+
T Consensus       257 ~i~~~s~SK~~~~~G~RvG~~~~~~~  282 (420)
T 4h51_A          257 VLLAQSFSKNMGLYSERAGTLSLLLK  282 (420)
T ss_dssp             CEEEEECTTTSCCGGGCEEEEEEECS
T ss_pred             EEEEeccccccccccCceEEEEeccc
Confidence            256678999876553 3777766443

>2yky_A Beta-transaminase; transferase; HET: PLP SFE; 1.69A {Mesorhizobium SP} PDB: 2ykv_A* 2yku_A* 2ykx_A*

Probab=98.89  E-value=6.4e-13  Score=137.32  Aligned_cols=152  Identities=13%  Similarity=0.012  Sum_probs=97.3

Q ss_pred             cEEEeCcHHHHHHHHHHHHHHhcCCcccccCCCCCCCeEEEecCCCchHHHHHH---HHhCCCCCcEEEEecCCCCCcCH
Q psy14299          4 KPFLLPGGSISNMYSICLARYRLDPDTKRKGLSHLPPLCMFTSEDSHYSMLKAA---HWLGIGMDNVIRVKTNERGQMIC   80 (448)
Q Consensus         4 ~g~~t~ggT~an~~al~~a~~~~~~~~~~~G~~~~~~~~Vl~~~~~H~s~~~~~---~~~g~~~~~v~~v~~~~~g~id~   80 (448)
                      .++|+++||+||..|+..+|..-           ..+.+|......|-+...+.   ...|+.. .+..+|.+     |+
T Consensus       158 ~v~~~nSGseA~~~Aik~ar~~t-----------gr~~ii~~~~~yHG~~~~~~sg~~~~g~~~-~~~~~~~~-----d~  220 (465)
T 2yky_A          158 LVRFTNSGTEANLMALATATAIT-----------GRKTVLAFDGGYHGGLLNFASGHAPTNAPY-HVVLGVYN-----DV  220 (465)
Confidence            36899999999999998876431           12344555566666554433   1112211 23334432     88


Q ss_pred             HHHHHHHHHhhhcCCCcEEEEEeccCCccccccC----HHHHHHHHHHcCCEEEEecccccccccccchhhhhcCCCCcc
Q psy14299         81 SFLEQTIQTSLAEKKIPLFVNATAGTTVLGAFDP----LDEIATVCEKYDLWMHVDACWGGSLIFSEKYSFVLKGINRAN  156 (448)
Q Consensus        81 e~Le~~l~~~~~~~~~~~lVv~~~~~t~tG~~~~----l~~I~~ia~~~g~~l~VD~A~~~~~~~~~~~~~~~~~~~~aD  156 (448)
                      ++|++++++.   +.++++|++....+++|.+.|    +++|.++|++||+++++|++|+ +.. ...+.....++ ..|
T Consensus       221 ~~l~~~l~~~---~~~~aavi~epv~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~~-~r~-g~~~a~~~~gv-~pD  294 (465)
T 2yky_A          221 EGTADLLKRH---GHDCAAILVEPMLGAGGCVPAERAFLDLLRAEASRCGALLIFDEVMT-SRL-SGGGAQEMLGI-SAD  294 (465)
Confidence            9999999742   135778887776667898777    9999999999999999999999 421 11111111122 256


Q ss_pred             EEEECCccccCCCCceEEEEEecc
Q psy14299        157 SVSWNPHKMLGAPLQCSILLIKEK  180 (448)
Q Consensus       157 ~~~~s~hK~l~~P~g~G~l~vr~~  180 (448)
                      ++  +..|++++...+|+++.+++
T Consensus       295 i~--t~sK~lg~G~piG~v~~~~~  316 (465)
T 2yky_A          295 LT--TLGKYIGGGMSFGAFGGRRD  316 (465)
Confidence            55  45799987555777766553

>4e3q_A Pyruvate transaminase; aminotransferase, transferase; HET: PMP; 1.90A {Vibrio fluvialis} PDB: 4e3r_A* 3nui_A

Probab=99.23  E-value=3.3e-09  Score=109.70  Aligned_cols=167  Identities=16%  Similarity=0.143  Sum_probs=97.9

Q ss_pred             cEEEeCcHHHHHHHHHHHHHHhcCCcccccCCCCCCCeEEEecCCCchHHHHHHHHhCC--------CCCcEEEEecCC-
Q psy14299          4 KPFLLPGGSISNMYSICLARYRLDPDTKRKGLSHLPPLCMFTSEDSHYSMLKAAHWLGI--------GMDNVIRVKTNE-   74 (448)
Q Consensus         4 ~g~~t~ggT~an~~al~~a~~~~~~~~~~~G~~~~~~~~Vl~~~~~H~s~~~~~~~~g~--------~~~~v~~v~~~~-   74 (448)
                      .++|+++|||||-.|+..+|...    ++.|.+ ....+|-.....|-...-+....+.        ....+..++.+. 
T Consensus       130 ~v~f~~sGsEA~e~AiKlAr~~~----~~~g~~-~r~~ii~~~~~yHG~t~~a~s~tg~~~~~~~~~~~~~~~~~~~p~~  204 (473)
T 4e3q_A          130 RVFYTNSGSEANDTMVKMLWFLH----AAEGKP-QKRKILTRWNAYHGVTAVSASMTGKPYNSVFGLPLPGFVHLTCPHY  204 (473)
T ss_dssp             EEEEESSHHHHHHHHHHHHHHHH----HHTTCT-TCCEEEEETTCCCCSSHHHHHHSCCGGGGGGTCSCTTEEEECCCCH
T ss_pred             EEEEeCchHHHHHHHHHHHHHHH----HhcCCC-CcceEEEeeceECCCccccccccccccccccCCCCCcccccCCCcc
Confidence            47899999999999999988642    122322 1223444556667655555554432        111244444321 


Q ss_pred             -----CCCc-------CHHHHHHHHHHhhhcCCCcEEEEEeccCCccccccC----HHHHHHHHHHcCCEEEEecccccc
Q psy14299         75 -----RGQM-------ICSFLEQTIQTSLAEKKIPLFVNATAGTTVLGAFDP----LDEIATVCEKYDLWMHVDACWGGS  138 (448)
Q Consensus        75 -----~g~i-------d~e~Le~~l~~~~~~~~~~~lVv~~~~~t~tG~~~~----l~~I~~ia~~~g~~l~VD~A~~~~  138 (448)
                           .+..       ..+++++.+.+.  ....+.+|++.-.-...|.+.|    +++|.++|++||+++++|+.+.+.
T Consensus       205 ~~~~~~~~~~~~~~~~~~~~l~~~i~~~--~~~~iAavi~EPiqg~gG~~~p~~~fl~~lr~lc~~~gilLI~DEV~tGf  282 (473)
T 4e3q_A          205 WRYGEEGETEEQFVARLARELEETIQRE--GADTIAGFFAEPVMGAGGVIPPAKGYFQAILPILRKYDIPVISDEVICGF  282 (473)
T ss_dssp             HHHSCTTCCHHHHHHHHHHHHHHHHHHH--CGGGEEEEEECSSBSTTTSBCCCTTHHHHHHHHHHHTTCCEEEECTTTSS
T ss_pred             cccccccchhhHHHHHHHHHHHHHHHhh--CCCceEEEEeCCccCCCCceeCCHHHHHHHHHHhcccceEEeccCccccC
Confidence                 1111       123455555432  1123555666666666676654    899999999999999999988764


Q ss_pred             cccccchhhhhcCCCCccEEEECCccccCCC-CceEEEEEecc
Q psy14299        139 LIFSEKYSFVLKGINRANSVSWNPHKMLGAP-LQCSILLIKEK  180 (448)
Q Consensus       139 ~~~~~~~~~~~~~~~~aD~~~~s~hK~l~~P-~g~G~l~vr~~  180 (448)
                      --...-+.....++ ..|++++  -|.+++- ...|.+.++++
T Consensus       283 GRtG~~fa~e~~gv-~PDi~t~--~K~l~gG~~Pl~av~~~~~  322 (473)
T 4e3q_A          283 GRTGNTWGCVTYDF-TPDAIIS--SKNLTAGFFPMGAVILGPE  322 (473)
T ss_dssp             STTSSSCHHHHTTC-CCSEEEE--CGGGGTTSSCCEEEEECHH
T ss_pred             CcccchhHHHhcCC-CCChHHh--cccccCCCCCcccccccHH
Confidence            22111111112233 3688876  5876554 56788878665

>4a0g_A Adenosylmethionine-8-amino-7-oxononanoate aminotransferase; BIO3-BIO1, biotin synthesis; HET: PLP; 2.50A {Arabidopsis thaliana} PDB: 4a0h_A* 4a0r_A* 4a0f_A*

Probab=99.03  E-value=7.9e-09  Score=113.82  Aligned_cols=171  Identities=11%  Similarity=0.058  Sum_probs=95.6

Q ss_pred             cEEEeCcHHHHHHHHHHHHHHhcCCcccccCCCC-------CCCeEEEecCCCchHHHHHHHHhCCCCC-----------
Q psy14299          4 KPFLLPGGSISNMYSICLARYRLDPDTKRKGLSH-------LPPLCMFTSEDSHYSMLKAAHWLGIGMD-----------   65 (448)
Q Consensus         4 ~g~~t~ggT~an~~al~~a~~~~~~~~~~~G~~~-------~~~~~Vl~~~~~H~s~~~~~~~~g~~~~-----------   65 (448)
                      .++|+++||+||-.|+..+++++.   .+.|.+.       ....+|......|-+...++...|....           
T Consensus       444 ~vff~~SGSeA~E~AlK~A~r~~~---~~~g~~~~~~~~~~~r~~iI~~~~syHG~T~gals~tg~~~~~~~~~~~~~~~  520 (831)
T 4a0g_A          444 RVYFSDNGSTAIEIALKMAFRKFC---VDHNFCEATEEEKHIVVKVIALRGSYHGDTLGAMEAQAPSPYTGFLQQPWYTG  520 (831)
T ss_dssp             EEEEESSHHHHHHHHHHHHHHHHH---HTTTC---------CCEEEEEETTCCCCSSHHHHHTSCCCGGGSTTTCTTCCC
T ss_pred             EEEECCChhHHHHHHHHHHHHHHH---hhcCCCccccccccCccEEEEecCCcccCceeeeeccCccccccccccccccC
Confidence            589999999999999999843221   1122210       1224566677888888887776653100           


Q ss_pred             --------------cEEEEecCCCCC--------c-C------------------HHHHHHHHHHhh--hcCCCcEEEEE
Q psy14299         66 --------------NVIRVKTNERGQ--------M-I------------------CSFLEQTIQTSL--AEKKIPLFVNA  102 (448)
Q Consensus        66 --------------~v~~v~~~~~g~--------i-d------------------~e~Le~~l~~~~--~~~~~~~lVv~  102 (448)
                                    .+..++.....+        . +                  .++|++.|++..  ..+.++.+|++
T Consensus       521 ~~~~~~~p~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~le~~l~~~~~~~~~~~iaavi~  600 (831)
T 4a0g_A          521 RGLFLDPPTVFLSNGSWNISLPESFSEIAPEYGTFTSRDEIFDKSRDASTLARIYSAYLSKHLQEHSGVRQSAHVGALII  600 (831)
T ss_dssp             CEEEECCCEEEEETTEEEEECCTTSCCCCSSTTEESCHHHHHCGGGGGSHHHHHHHHHHHHHC---------CEEEEEEE
T ss_pred             CccccCCccccccCCceEecCCccccccccccccccchhhhhcccccchhhhHHHHHHHHHHHHhhhhhcCCCcEEEEEE
Confidence                          011122221100        0 1                  256777775321  11224555665


Q ss_pred             ecc-CCccccccC----HHHHHHHHHHcCCEEEEecccccccccccchhhhhcCCCCccEEEECCccccCCC-CceEEEE
Q psy14299        103 TAG-TTVLGAFDP----LDEIATVCEKYDLWMHVDACWGGSLIFSEKYSFVLKGINRANSVSWNPHKMLGAP-LQCSILL  176 (448)
Q Consensus       103 ~~~-~t~tG~~~~----l~~I~~ia~~~g~~l~VD~A~~~~~~~~~~~~~~~~~~~~aD~~~~s~hK~l~~P-~g~G~l~  176 (448)
                      .-. ....|.+.+    +++|.++|++||+++++|+++.+.-.....+.....++ ..|+++  ..|.+++- ...|+++
T Consensus       601 Epvvqg~gG~~~~~~~~L~~l~~lc~~~gilLI~DEV~tGfGRtG~~fa~e~~gv-~PDiit--lsK~L~gG~~Plgav~  677 (831)
T 4a0g_A          601 EPVIHGAGGMHMVDPLFQRVLVNECRNRKIPVIFDEVFTGFWRLGVETTTELLGC-KPDIAC--FAKLLTGGMVPLAVTL  677 (831)
T ss_dssp             CCSEETTTTSEEECHHHHHHHHHHHHHTTCCEEEECTTTTTTTTSBSSTHHHHSS-CCSEEE--ECGGGGTTSSCCEEEE
T ss_pred             ecccccCCCCccCCHHHHHHHHHHHHHcCCeEEEEcCccccccCCCchhhHhcCC-CCcEEE--EecccccCccCcEEEE
Confidence            553 455676655    99999999999999999998764211111111111233 368776  56888653 2467877


Q ss_pred             Eecc
Q psy14299        177 IKEK  180 (448)
Q Consensus       177 vr~~  180 (448)
                      ++++
T Consensus       678 ~~~~  681 (831)
T 4a0g_A          678 ATDA  681 (831)
T ss_dssp             ECHH
T ss_pred             ECHH
Confidence            7664

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	448
d1js3a_	476	c.67.1.6 (A:) DOPA decarboxylase {Pig (Sus scrofa)	2e-46
d1js3a_	476	c.67.1.6 (A:) DOPA decarboxylase {Pig (Sus scrofa)	2e-16
d1pmma_	450	c.67.1.6 (A:) Glutamate decarboxylase beta, GadB {	1e-26
d3bc8a1	445	c.67.1.9 (A:23-467) Selenocysteinyl-tRNA synthase	6e-23
d2z67a1	434	c.67.1.9 (A:1-434) Selenocysteinyl-tRNA synthase (	6e-22
d2z67a1	434	c.67.1.9 (A:1-434) Selenocysteinyl-tRNA synthase (	8e-07
d1c7ga_	456	c.67.1.2 (A:) Tyrosine phenol-lyase {Erwinia herbi	0.004

>d1js3a_ c.67.1.6 (A:) DOPA decarboxylase {Pig (Sus scrofa) [TaxId: 9823]} Length = 476

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: Pyridoxal-dependent decarboxylase
domain: DOPA decarboxylase
species: Pig (Sus scrofa) [TaxId: 9823]

 Score =  164 bits (417), Expect = 2e-46
 Identities = 61/247 (24%), Positives = 113/247 (45%), Gaps = 8/247 (3%)

Query: 6   FLLPGGSISNMYSICLARYRLDPDTKRKGLS-----HLPPLCMFTSEDSHYSMLKAAHWL 60
            +    S + + ++  AR ++    +           L  L  + S+ +H S+ +A    
Sbjct: 143 VIQGSASEATLVALLAARTKVVRRLQAASPGLTQGAVLEKLVAYASDQAHSSVERAGLIG 202

Query: 61  GIGMDNVIRVKTNERGQMICSFLEQTIQTSLAEKKIPLFVNATAGTTVLGAFDPLDEIAT 120
           G+    +  + ++ +  M  S L++ ++   A   IP FV AT GTT   +FD L E+  
Sbjct: 203 GV---KLKAIPSDGKFAMRASALQEALERDKAAGLIPFFVVATLGTTSCCSFDNLLEVGP 259

Query: 121 VCEKYDLWMHVDACWGGSLIFSEKYSFVLKGINRANSVSWNPHKMLGAPLQCSILLIKEK 180
           +C + D+W+HVDA + GS     ++  +L G+  A+S ++NPHK L     CS + +K +
Sbjct: 260 ICHEEDIWLHVDAAYAGSAFICPEFRHLLNGVEFADSFNFNPHKWLLVNFDCSAMWVKRR 319

Query: 181 GLLHQANATAATYLFQQDKFYDVSFDTGDKSVQCGRKVDAFKLWLMWKARGNLGFRHFVD 240
             L  A      YL    +   +  D     +  GR+  + K+W +++  G  G + ++ 
Sbjct: 320 TDLTGAFKLDPVYLKHSHQGSGLITDYRHWQLPLGRRFRSLKMWFVFRMYGVKGLQAYIR 379

Query: 241 NAVDCSR 247
             V  S 
Sbjct: 380 KHVQLSH 386

>d1js3a_ c.67.1.6 (A:) DOPA decarboxylase {Pig (Sus scrofa) [TaxId: 9823]} Length = 476

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: Pyridoxal-dependent decarboxylase
domain: DOPA decarboxylase
species: Pig (Sus scrofa) [TaxId: 9823]

 Score = 78.7 bits (193), Expect = 2e-16
 Identities = 27/175 (15%), Positives = 55/175 (31%), Gaps = 20/175 (11%)

Query: 262 GLLHQANATAATYLFQQDKFYDVSFDTGDKSVQCGRKVDAFKLWLMWKARGNLGFRHFVD 321
             L  A      YL    +   +  D     +  GR+  + K+W +++  G  G + ++ 
Sbjct: 320 TDLTGAFKLDPVYLKHSHQGSGLITDYRHWQLPLGRRFRSLKMWFVFRMYGVKGLQAYIR 379

Query: 322 NAVDCSRYFLSQISQRPGFRLVIPEFQCTNICFWFIPVSLRDKVEDETWWSTLSKVAPRI 381
             V  S  F + + Q P F +         +CF        ++                +
Sbjct: 380 KHVQLSHEFEAFVLQDPRFEVCAEV-TLGLVCFRLKGSDGLNE---------------AL 423

Query: 382 KEKLVLGGTLMIGYQPLQHRNLHNFFRLVTTCHPASSRQDMDYAIDQIELRGAEV 436
            E++     + +    L+ +      R    C        +  A + I    AE+
Sbjct: 424 LERINSARKIHLVPCRLRGQ---FVLRFA-ICSRKVESGHVRLAWEHIRGLAAEL 474

>d1pmma_ c.67.1.6 (A:) Glutamate decarboxylase beta, GadB {Escherichia coli [TaxId: 562]} Length = 450

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: Pyridoxal-dependent decarboxylase
domain: Glutamate decarboxylase beta, GadB
species: Escherichia coli [TaxId: 562]

 Score =  109 bits (273), Expect = 1e-26
 Identities = 40/255 (15%), Positives = 73/255 (28%), Gaps = 28/255 (10%)

Query: 9   PGGSISNMYSICLARYRLDPDTKRKGLSHLPPLCMFTSEDSHYSMLKAAHWLGIGMDNVI 68
            G S + M      ++R     +  G     P              K A +  + +  + 
Sbjct: 122 IGSSEACMLGGMAMKWRWRKRMEAAGKPTDKP--NLVCGPVQICWHKFARYWDVELREIP 179

Query: 69  RVKTNERGQMICSFLEQTIQTSLAEKKIPLFVNATAGTTVLGAFDPLD------EIATVC 122
                 +  M    + +         +  + V  T G T  G ++         +     
Sbjct: 180 --MRPGQLFMDPKRMIEAC------DENTIGVVPTFGVTYTGNYEFPQPLHDALDKFQAD 231

Query: 123 EKYDLWMHVDACWGGSLI-FSEKYSFVLKGINRANSVSWNPHKMLGAPLQCSILLIKEKG 181
              D+ MH+DA  GG L  F          + R  S+S + HK   APL C  ++ +++ 
Sbjct: 232 TGIDIDMHIDAASGGFLAPFVAPDIVWDFRLPRVKSISASGHKFGLAPLGCGWVIWRDEE 291

Query: 182 LLHQANATAATYLFQQDKFYDVSFDTGDKSVQCGRKVDAFKLWLMWKARGNLGFRHFVDN 241
            L Q       YL             G  ++   R             R   G   +   
Sbjct: 292 ALPQELVFNVDYL---------GGQIGTFAINFSRPAGQVIAQYYEFLRL--GREGYTKV 340

Query: 242 AVDCSRGSMTFSTLL 256
                + +   +  +
Sbjct: 341 QNASYQVAAYLADEI 355

>d3bc8a1 c.67.1.9 (A:23-467) Selenocysteinyl-tRNA synthase (SepSecS) {Mouse (Mus musculus) [TaxId: 10090]} Length = 445

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: SepSecS-like
domain: Selenocysteinyl-tRNA synthase (SepSecS)
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 98.5 bits (244), Expect = 6e-23
 Identities = 30/242 (12%), Positives = 68/242 (28%), Gaps = 33/242 (13%)

Query: 6   FLLPGGSISNMYSICLARYRLDPDTKRKGLSHLPPLCMFTSEDSHYSMLKAAHWLGIGMD 65
           F++P  +  ++    L      P  K           +        S  K+    G    
Sbjct: 116 FVVPMATGMSLTLCFLTLRHKRPKAKY----------IIWPRIDQKSCFKSMVTAGFEPV 165

Query: 66  NVIRVKTNERGQMICSFLEQTIQTSLAEKKIPLFVNATAGTTVLGAFDPLDEIATVCEKY 125
            +  V   +  +     +E  IQ    E  +   +++T         D L+E+A +C  Y
Sbjct: 166 VIENVLEGDELRTDLKAVEAKIQELGPEHIL--CLHSTTACFAPRVPDRLEELAVICANY 223

Query: 126 DLWMHVDACWGGSLIFSEKYSFVLKGINRANSVSWNPHKMLGAPLQCSILLIKEKGLLHQ 185
           D+   V+  +G               + R ++   +  K    P+  +I+    +  +  
Sbjct: 224 DIPHVVNNAYGLQSSKCMHLIQQGARVGRIDAFVQSLDKNFMVPVGGAIIAGFNEPFIQD 283

Query: 186 ANATAATYLFQQDKFYDVSFDTGDKSVQCGRKVDAFKLWLMWKARGNLGFRHFVDNAVDC 245
            +                                +  + +   + G  G+R  +    + 
Sbjct: 284 ISKM---------------------YPGRASASPSLDVLITLLSLGCSGYRKLLKERKEM 322

Query: 246 SR 247
             
Sbjct: 323 FV 324

>d2z67a1 c.67.1.9 (A:1-434) Selenocysteinyl-tRNA synthase (SepSecS) {Methanococcus maripaludis [TaxId: 39152]} Length = 434

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: SepSecS-like
domain: Selenocysteinyl-tRNA synthase (SepSecS)
species: Methanococcus maripaludis [TaxId: 39152]

 Score = 95.4 bits (236), Expect = 6e-22
 Identities = 33/242 (13%), Positives = 73/242 (30%), Gaps = 34/242 (14%)

Query: 6   FLLPGGSISNMYSICLARYRLDPDTKRKGLSHLPPLCMFTSEDSHYSMLKAAHWLGIGMD 65
              P  +  ++     A  +                 +     SH S +KA  ++G+ M 
Sbjct: 133 IATPISTGMSISLCLSAARKKYGSNV-----------VIYPYASHKSPIKAVSFVGMNMR 181

Query: 66  NVIRVKTNERGQMICSFLEQTIQTSLAEKKIPLFVNATAGTTVLGAFDPLDEIATVCEKY 125
            V  V   +R  +    +E  I+  +     P  V +T         D + EIA +CE Y
Sbjct: 182 LVETVLDGDRVYVPVEDIENAIKKEIELGNRP-CVLSTLTFFPPRNSDDIVEIAKICENY 240

Query: 126 DLWMHVDACWGGSLIFSEKYSFVLKGINRANSVSWNPHKMLGAPLQCSILLIKEKGLLHQ 185
           D+   ++  +     +  +         R ++V  +  K L  P+   ++   +   + +
Sbjct: 241 DIPHIINGAYAIQNNYYLEKLKKA-FKYRVDAVVSSSDKNLLTPIGGGLVYSTDAEFIKE 299

Query: 186 ANATAATYLFQQDKFYDVSFDTGDKSVQCGRKVDAFKLWLMWKARGNLGFRHFVDNAVDC 245
            + +                                   +   + G+  +   V N  + 
Sbjct: 300 ISLSYP---------------------GRASATPVVNTLVSLLSMGSKNYLELVKNQKNS 338

Query: 246 SR 247
            +
Sbjct: 339 KK 340

>d2z67a1 c.67.1.9 (A:1-434) Selenocysteinyl-tRNA synthase (SepSecS) {Methanococcus maripaludis [TaxId: 39152]} Length = 434

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: SepSecS-like
domain: Selenocysteinyl-tRNA synthase (SepSecS)
species: Methanococcus maripaludis [TaxId: 39152]

 Score = 48.8 bits (115), Expect = 8e-07
 Identities = 19/141 (13%), Positives = 47/141 (33%), Gaps = 18/141 (12%)

Query: 294 QCGRKVDAFKLWLMWKARGNLGFRHFVDNAVDCSRYF---LSQISQRPGFRLV-IPEFQC 349
                       +   + G+  +   V N  +  +     L+ +S++ G + + +     
Sbjct: 306 GRASATPVVNTLVSLLSMGSKNYLELVKNQKNSKKLLDELLNDLSKKTGGKFLDVESPIA 365

Query: 350 TNICFWFIPVSLRDKVEDETWWSTLSKVAPRIKEKLVLGGTLMIGYQPLQHRNLHNFFRL 409
           + I     PV +  K+ +      L    PR  +K    G   +G         H++  +
Sbjct: 366 SCISVNSDPVEIAAKLYN------LRVTGPRGIKKTDHFGNCYLGTYT------HDYIVM 413

Query: 410 VTTCHPASSRQDMDYAIDQIE 430
                     +D+  ++ ++E
Sbjct: 414 N--AAIGVRTEDIVNSVSKLE 432

>d1c7ga_ c.67.1.2 (A:) Tyrosine phenol-lyase {Erwinia herbicola [TaxId: 549]} Length = 456

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: Beta-eliminating lyases
domain: Tyrosine phenol-lyase
species: Erwinia herbicola [TaxId: 549]

 Score = 37.1 bits (85), Expect = 0.004
 Identities = 17/169 (10%), Positives = 46/169 (27%), Gaps = 14/169 (8%)

Query: 32  RKGLSHLPPLCMFTSEDSHYSMLKAAHWLGIGMDNVIRVKTNERGQMICSFLEQTIQ--T 89
           + G      +   T+             +     +   +    +G +  + L   I+   
Sbjct: 112 KPGQYVAGNMYFTTTRFHQEKNGATFVDIVRDEAHDASLNLPFKGDIDLNKLATLIKEKG 171

Query: 90  SLAEKKIPLFVNATAGTTVLGAFDPLDEIATVCEKYDLWMHVDAC------WGGSLIFSE 143
           +     I L V          +   +  +  +   Y + +  DA       +      + 
Sbjct: 172 AENIAYICLAVTVNLAGGQPVSMANMRAVHEMASTYGIKIFYDATRCVENAYFIKEQEAG 231

Query: 144 KYSFVLKGINR-----ANSVSWNPHKMLGAPLQCSILLIKEKGLLHQAN 187
             +  +K I       A+  + +  K     +    L + ++ +   A 
Sbjct: 232 YENVSIKDIVHEMFSYADGCTMSGKKDCLVNIG-GFLCMNDEEMFSAAK 279

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	448
d1js3a_	476	DOPA decarboxylase {Pig (Sus scrofa) [TaxId: 9823]	100.0
d1pmma_	450	Glutamate decarboxylase beta, GadB {Escherichia co	100.0
d1jf9a_	405	NifS-like protein/selenocysteine lyase {Escherichi	99.97
d1t3ia_	408	Probable cysteine desulfurase SufS {Synechocystis	99.97
d3bc8a1	445	Selenocysteinyl-tRNA synthase (SepSecS) {Mouse (Mu	99.97
d1elua_	381	Cystine C-S lyase C-des {Synechocystis sp. [TaxId:	99.96
d2z67a1	434	Selenocysteinyl-tRNA synthase (SepSecS) {Methanoco	99.96
d2e7ja1	364	Selenocysteinyl-tRNA synthase (SepSecS) {Archaeogl	99.95
d1h0ca_	388	Alanine-glyoxylate aminotransferase {Human (Homo s	99.94
d1p3wa_	391	Cysteine desulfurase IscS {Escherichia coli [TaxId	99.94
d1qz9a_	404	Kynureninase {Pseudomonas fluorescens [TaxId: 294]	99.93
d1eg5a_	376	NifS-like protein/selenocysteine lyase {Thermotoga	99.92
d2bkwa1	382	Alanine-glyoxylate aminotransferase {Baker's yeast	99.92
d1m32a_	361	2-aminoethylphosphonate transaminase {Salmonella t	99.91
d1vjoa_	377	Alanine-glyoxylate aminotransferase {Cyanobacteria	99.9
d1c4ka2	462	Ornithine decarboxylase major domain {Lactobacillu	99.9
d1fc4a_	401	2-amino-3-ketobutyrate CoA ligase {Escherichia col	99.9
d2bwna1	396	5-aminolevulinate synthase {Rhodobacter capsulatus	99.89
d2ch1a1	388	3-hydroxykynurenine transaminase {Malaria mosquito	99.89
d1bs0a_	383	PLP-dependent acyl-CoA synthase (8-amino-7-oxonano	99.88
d1iuga_	348	Subgroup IV putative aspartate aminotransferase {T	99.86
d1v72a1	345	Phenylserine aldolase PSALD {Pseudomonas putida [T	99.86
d1wyua1	437	Glycine dehydrogenase (decarboxylating) subunit 1	99.78
d1d2fa_	361	Modulator in mal gene expression, MalY {Escherichi	99.75
d1iaya_	428	1-aminocyclopropane-1-carboxylate synthase (ACC sy	99.74
d1m6sa_	343	Low-specificity threonine aldolase {Thermotoga mar	99.74
d1mdoa_	376	Aminotransferase ArnB {Salmonella typhimurium [Tax	99.74
d1j32a_	388	Aspartate aminotransferase, AAT {Phormidium lapide	99.74
d1m7ya_	431	1-aminocyclopropane-1-carboxylate synthase (ACC sy	99.73
d1svva_	340	Low-specificity threonine aldolase {Leishmania maj	99.73
d1gdea_	388	Aromatic aminoacid aminotransferase, AroAT {Archae	99.73
d1v2da_	368	Glutamine aminotransferase {Thermus thermophilus [	99.7
d1vp4a_	420	Putative aminotransferase TM1131 {Thermotoga marit	99.69
d1bjna_	360	Phosphoserine aminotransferase, PSAT {Escherichia	99.68
d1xi9a_	395	Putative alanine aminotransferase {Pyrococcus furi	99.68
d2aeua1	366	Hypothetical protein MJ0158 {Archaeon Methanococcu	99.67
d1b5pa_	382	Aspartate aminotransferase, AAT {Thermus thermophi	99.67
d1wsta1	403	Multiple substrate aminotransferase, MSAT {Thermoc	99.66
d1bw0a_	412	Tyrosine aminotransferase (TAT) {Trypanosoma cruzi	99.66
d2c0ra1	361	Phosphoserine aminotransferase, PSAT {Bacillus cir	99.65
d1wyub1	471	Glycine dehydrogenase subunit 2 (P-protein) {Therm	99.64
d1c7na_	394	Cystalysin {Treponema denticola [TaxId: 158]}	99.64
d1c7ga_	456	Tyrosine phenol-lyase {Erwinia herbicola [TaxId: 5	99.64
d1dfoa_	416	Serine hydroxymethyltransferase {Escherichia coli	99.64
d1lc5a_	355	L-threonine-O-3-phosphate decarboxylase CobD {Salm	99.63
d1fg7a_	354	Histidinol-phosphate aminotransferase HisC {Escher	99.61
d1kl1a_	405	Serine hydroxymethyltransferase {Bacillus stearoth	99.6
d1ax4a_	465	Tryptophan indol-lyase (tryptophanase) {Proteus vu	99.58
d2v1pa1	467	Tryptophan indol-lyase (tryptophanase) {Escherichi	99.57
d2fnua1	371	Spore coat polysaccharide biosynthesis protein C {	99.55
d1rv3a_	470	Serine hydroxymethyltransferase {Rabbit (Oryctolag	99.55
d1b9ha_	384	3-amino-5-hydroxybenzoic acid synthase (AHBA synth	99.53
d1w23a_	360	Phosphoserine aminotransferase, PSAT {Bacillus alc	99.52
d1o4sa_	375	Aspartate aminotransferase, AAT {Thermotoga mariti	99.51
d2a7va1	463	Serine hydroxymethyltransferase {Human (Homo sapie	99.51
d1u08a_	382	Putative methionine aminotransferase YdbL {Escheri	99.51
d2r5ea1	418	Kynurenine--oxoglutarate transaminase I {Yellowfev	99.51
d2gb3a1	389	AAT homologue TM1698 {Thermotoga maritima [TaxId:	99.5
d1w7la_	418	Kynurenine--oxoglutarate transaminase I {Human (Ho	99.47
d2f8ja1	334	Histidinol-phosphate aminotransferase HisC {Thermo	99.44
d1y4ia1	397	Methionine gamma-lyase, MGL {Citrobacter freundii	99.44
d1gc0a_	392	Methionine gamma-lyase, MGL {Pseudomonas putida [T	99.4
d1o69a_	374	Aminotransferase homolog WlaK (PglE, Cj1121c) {Cam	99.38
d1cs1a_	384	Cystathionine gamma-synthase, CGS {Escherichia col	99.37
d1sffa_	425	4-aminobutyrate aminotransferase, GABA-aminotransf	99.31
d1qgna_	398	Cystathionine gamma-synthase, CGS {Common tobacco	99.31
d1ibja_	380	Cystathionine beta-lyase, CBL {Thale cress (Arabid	99.29
d2byla1	404	Ornithine aminotransferase {Human (Homo sapiens) [	99.29
d1ajsa_	412	Aspartate aminotransferase, AAT {Pig (Sus scrofa),	99.29
d1z7da1	404	Ornithine aminotransferase {Plasmodium yoelii yoel	99.28
d2gsaa_	427	Glutamate-1-semialdehyde aminomutase (aminotransfe	99.28
d1vefa1	387	Acetylornithine/acetyl-lysine aminotransferase Arg	99.27
d7aata_	401	Aspartate aminotransferase, AAT {Chicken (Gallus g	99.26
d1cl1a_	391	Cystathionine beta-lyase, CBL {Escherichia coli [T	99.24
d1pffa_	331	Methionine gamma-lyase, MGL {Trichomonas vaginalis	99.22
d2q7wa1	396	Aspartate aminotransferase, AAT {Escherichia coli	99.17
d2ay1a_	394	Aromatic aminoacid aminotransferase, AroAT {Paraco	99.16
d1e5ea_	394	Methionine gamma-lyase, MGL {Trichomonas vaginalis	99.16
d2hoxa1	425	Alliinase {Garlic (Allium sativum) [TaxId: 4682]}	99.15
d1yaaa_	412	Aspartate aminotransferase, AAT {Baker's yeast (Sa	99.14
d1zoda1	431	Dialkylglycine decarboxylase {Pseudomonas cepacia	99.12
d1ohwa_	461	4-aminobutyrate aminotransferase, GABA-aminotransf	99.08
d1s0aa_	429	Adenosylmethionine-8-amino-7-oxononanoate aminotra	99.05
d3tata_	397	Aromatic aminoacid aminotransferase, AroAT {Escher	99.01
d1n8pa_	393	Cystathionine gamma-lyase (CYS3) {Baker's yeast (S	98.99
d2ctza1	421	O-acetyl-L-homoserine sulfhydrylase {Thermus therm	98.9

>d1js3a_ c.67.1.6 (A:) DOPA decarboxylase {Pig (Sus scrofa) [TaxId: 9823]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: Pyridoxal-dependent decarboxylase
domain: DOPA decarboxylase
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=100.00  E-value=2.3e-50  Score=416.95  Aligned_cols=331  Identities=23%  Similarity=0.384  Sum_probs=282.4

Q ss_pred             CccEEEeCcHHHHHHHHHHHHHHhcCCcccc--cCCCC---CCCeEEEecCCCchHHHHHHHHhCCCCCcEEEEecCCCC
Q psy14299          2 NLKPFLLPGGSISNMYSICLARYRLDPDTKR--KGLSH---LPPLCMFTSEDSHYSMLKAAHWLGIGMDNVIRVKTNERG   76 (448)
Q Consensus         2 ~~~g~~t~ggT~an~~al~~a~~~~~~~~~~--~G~~~---~~~~~Vl~~~~~H~s~~~~~~~~g~~~~~v~~v~~~~~g   76 (448)
                      +++|++|+|||+||++|+++||++..++.+.  .|+..   .++.+||+++.+|+|+.++|.++|+   .++.||+++++
T Consensus       139 ~~~G~~~~Ggs~anl~al~~AR~~~~~~~~~~~~g~~~~~~~~~~vv~~s~~~H~Si~ka~~~lGl---~~~~v~~d~~~  215 (476)
T d1js3a_         139 EGGGVIQGSASEATLVALLAARTKVVRRLQAASPGLTQGAVLEKLVAYASDQAHSSVERAGLIGGV---KLKAIPSDGKF  215 (476)
T ss_dssp             SCEEEEESCHHHHHHHHHHHHHHHHHHHHHHHSTTCCHHHHHHHEEEEEETTCCHHHHHHHHHHTC---EEEEECCCTTS
T ss_pred             CCCceECCcHHHHHHHHHHHHHHHHHHhhcccccCcccccccCceEEEecccccHHHHHHHHhcCc---eEEEeccCCCC
Confidence            4689999999999999999999876544332  23221   1356899999999999999999999   68899999999


Q ss_pred             CcCHHHHHHHHHHhhhcCCCcEEEEEeccCCccccccCHHHHHHHHHHcCCEEEEecccccccccccchhhhhcCCCCcc
Q psy14299         77 QMICSFLEQTIQTSLAEKKIPLFVNATAGTTVLGAFDPLDEIATVCEKYDLWMHVDACWGGSLIFSEKYSFVLKGINRAN  156 (448)
Q Consensus        77 ~id~e~Le~~l~~~~~~~~~~~lVv~~~~~t~tG~~~~l~~I~~ia~~~g~~l~VD~A~~~~~~~~~~~~~~~~~~~~aD  156 (448)
                      +||+++|+++|+++.+++..|.+|+.+.++|.+|.+|||++|+++|++||+|+|||||+|+...+.++.+..+.+++.+|
T Consensus       216 ~md~~~L~~~i~~~~~~g~~p~~VvataGtt~~G~iDpl~~I~~i~~~~~~wlHVDAA~Gg~~~~~~~~~~~~~gi~~aD  295 (476)
T d1js3a_         216 AMRASALQEALERDKAAGLIPFFVVATLGTTSCCSFDNLLEVGPICHEEDIWLHVDAAYAGSAFICPEFRHLLNGVEFAD  295 (476)
T ss_dssp             CCCHHHHHHHHHHHHHTTCEEEEEEEEBSCTTTCCBCCHHHHHHHHHHTTCEEEEECTTGGGGGGSTTTGGGGTTGGGCS
T ss_pred             CcCHHHHHHHHHHHHhcCCCcEEEeecCCCccceeeccHHHHHHHHHhcCcEEEEecccchhhhhhcchhhhhcCCcccc
Confidence            99999999999999989999999999999999999999999999999999999999999999999999899999999999


Q ss_pred             EEEECCccccCCCCceEEEEEeccchhhhhccCCcccccccCcccccccCCCCCcccCCCCchhHHHHHHHHHhChHHHH
Q psy14299        157 SVSWNPHKMLGAPLQCSILLIKEKGLLHQANATAATYLFQQDKFYDVSFDTGDKSVQCGRKVDAFKLWLMWKARGNLGFR  236 (448)
Q Consensus       157 ~~~~s~hK~l~~P~g~G~l~vr~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~g~~  236 (448)
                      |+++++|||+++|++||++++|++..+...+...+.|+..........+++.+++++++|+++++++|++++.+|..|++
T Consensus       296 Sit~d~HK~l~~P~~~g~~l~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sr~~~al~lw~~l~~~G~~g~~  375 (476)
T d1js3a_         296 SFNFNPHKWLLVNFDCSAMWVKRRTDLTGAFKLDPVYLKHSHQGSGLITDYRHWQLPLGRRFRSLKMWFVFRMYGVKGLQ  375 (476)
T ss_dssp             EEEECHHHHSSCCSSCEEEEESCHHHHHGGGC------------CCSCCCGGGSSSCSCCCCTHHHHHHHHHHHHHHHHH
T ss_pred             eeeecCccccccCCcceeecccchHHHHHHHhcChhhhccccccccccccccccccccchhhHHHHHHHHHHHHhHhHHH
Confidence            99999999999999999999999877766666667777654433344567788999999999999999999999988888


Q ss_pred             HHHHHhhhhccCCCccchhhhhhhhhhhhhhhhhhhhhhhccccccccccCCCCCccccccchhhHHHHHHHHHhcCccH
Q psy14299        237 HFVDNAVDCSRGSMTFSTLLCFDLQGLLHQANATAATYLFQQDKFYDVSFDTGDKSVQCGRKVDAFKLWLMWKARGNLGF  316 (448)
Q Consensus       237 ~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~  316 (448)
                      +.+++                                                                           
T Consensus       376 ~~i~~---------------------------------------------------------------------------  380 (476)
T d1js3a_         376 AYIRK---------------------------------------------------------------------------  380 (476)
T ss_dssp             HHHHH---------------------------------------------------------------------------
T ss_pred             HHHHH---------------------------------------------------------------------------
Confidence            85554                                                                           


Q ss_pred             HHHHHHHHHHHHHHHHHhhcCCCeEEeccCCceeeEEEEeeccCCCccccchhhhhhhhhhhHHHHHHHHhCCcEEEEee
Q psy14299        317 RHFVDNAVDCSRYFLSQISQRPGFRLVIPEFQCTNICFWFIPVSLRDKVEDETWWSTLSKVAPRIKEKLVLGGTLMIGYQ  396 (448)
Q Consensus       317 ~~~~~~~~~l~~~~~~~L~~~pg~~l~~~~~~~~~v~f~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~L~~~g~~~~~~~  396 (448)
                            ..++++++.+.|+++|+|+++ .+|.+++++|++.+.               +..+.++.++|.+.|.+++.++
T Consensus       381 ------~~~lA~~l~~~l~~~~~fel~-~~p~l~iV~Fr~~~~---------------d~~n~~l~~~l~~~G~~~~s~t  438 (476)
T d1js3a_         381 ------HVQLSHEFEAFVLQDPRFEVC-AEVTLGLVCFRLKGS---------------DGLNEALLERINSARKIHLVPC  438 (476)
T ss_dssp             ------HHHHHHHHHHHHHHCTTEEEC-SCCCSSEEEEEESSC---------------HHHHHHHHHHHHHHTSCBCEEE
T ss_pred             ------HHHHHHHHHHHHhcCCCeEEE-CCCceEEEEEEccCC---------------hHHHHHHHHHHHhcCCEEEeee
Confidence                  455699999999999999999 899999999998542               2245688999999998889999


Q ss_pred             ecCCcccccEEEEEecCCCCCCHHHHHHHHHHHHHHHHHh
Q psy14299        397 PLQHRNLHNFFRLVTTCHPASSRQDMDYAIDQIELRGAEV  436 (448)
Q Consensus       397 ~~~g~~~~~~lRis~~~~~~~t~edid~l~~al~~~~~~~  436 (448)
                      .++|+   .++|++++ |+.||++||+.+++.|+++++++
T Consensus       439 ~~~g~---~~lR~~i~-n~~Tt~~did~~~~~i~~~a~~l  474 (476)
T d1js3a_         439 RLRGQ---FVLRFAIC-SRKVESGHVRLAWEHIRGLAAEL  474 (476)
T ss_dssp             EETTE---EEEEEECC-CTTCCHHHHHHHHHHHHHHHHHH
T ss_pred             eECCE---EEEEEEeC-CCCCCHHHHHHHHHHHHHHHHHH
Confidence            99887   89999998 89999999999999999999875

>d1pmma_ c.67.1.6 (A:) Glutamate decarboxylase beta, GadB {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: Pyridoxal-dependent decarboxylase
domain: Glutamate decarboxylase beta, GadB
species: Escherichia coli [TaxId: 562]

Probab=100.00  E-value=6.2e-40  Score=336.55  Aligned_cols=321  Identities=15%  Similarity=0.128  Sum_probs=247.1

Q ss_pred             ccEEEeCcHHHHHHHHHHHHHHhcCCcccccCCCCCCCeEEEecCCCchHHHHHHHHhCCCCCcEEEEecCC-CCCcCHH
Q psy14299          3 LKPFLLPGGSISNMYSICLARYRLDPDTKRKGLSHLPPLCMFTSEDSHYSMLKAAHWLGIGMDNVIRVKTNE-RGQMICS   81 (448)
Q Consensus         3 ~~g~~t~ggT~an~~al~~a~~~~~~~~~~~G~~~~~~~~Vl~~~~~H~s~~~~~~~~g~~~~~v~~v~~~~-~g~id~e   81 (448)
                      +.|++|+|||+||++|+.++|++..++.+..|..  ....++++..+|+|+.++|+++|+   .++.||.++ ++++|++
T Consensus       116 ~~G~~t~GgSeA~~~a~~aar~~~~~~~~~~g~~--~~~~~~~~~~~H~s~~Kaa~~~gi---~~~~v~~~~~~~~~d~~  190 (450)
T d1pmma_         116 AVGTNTIGSSEACMLGGMAMKWRWRKRMEAAGKP--TDKPNLVCGPVQICWHKFARYWDV---ELREIPMRPGQLFMDPK  190 (450)
T ss_dssp             CSEEEESSHHHHHHHHHHHHHHHHHHHHHHHTCC--CSCCEEEESSCCHHHHHHHHHTTC---EEEECCCBTTBCSCCHH
T ss_pred             CcCeeeCchHHHHHHHHHHHHHHHHHHhhhcCCC--CCCceEEecccHHHHHHHHHHcCC---CceEeeecCCCCcCcHH
Confidence            5699999999999999999998765555555654  233467788899999999999999   788999876 5999999


Q ss_pred             HHHHHHHHhhhcCCCcEEEEEeccCCccccccCHHHHHHHH------HHcCCEEEEeccccccccccc-chhhhhcCCCC
Q psy14299         82 FLEQTIQTSLAEKKIPLFVNATAGTTVLGAFDPLDEIATVC------EKYDLWMHVDACWGGSLIFSE-KYSFVLKGINR  154 (448)
Q Consensus        82 ~Le~~l~~~~~~~~~~~lVv~~~~~t~tG~~~~l~~I~~ia------~~~g~~l~VD~A~~~~~~~~~-~~~~~~~~~~~  154 (448)
                      +|++++++      .+++|++++++|.+|.++|+++|+++|      +++|+|+|||||++++..++. .......+++.
T Consensus       191 ~L~~~i~~------~t~~Vv~t~gtt~tG~~dpv~~i~~i~~~~~~a~~~~i~lHVDAA~gG~~~p~~~~~~~~~~~~~~  264 (450)
T d1pmma_         191 RMIEACDE------NTIGVVPTFGVTYTGNYEFPQPLHDALDKFQADTGIDIDMHIDAASGGFLAPFVAPDIVWDFRLPR  264 (450)
T ss_dssp             HHHHHCCT------TEEEEECBBSCTTTCBBCCHHHHHHHHHHHHHHHCCCCCEEEECTTGGGTHHHHCTTCCCSTTSTT
T ss_pred             HHHHHhhh------CceEEEeeeeeccCCCccccchhhHHHHHHHHHhccCcEEEeehhhccceeeeechhhhhhhcccc
Confidence            99999965      588999999999999999999888875      568999999999999877443 22333456778


Q ss_pred             ccEEEECCccccCCCCceEEEEEeccchhhhhccCCcccccccCcccccccCCCCCcccCCCCch-hHHHHHHHHHhChH
Q psy14299        155 ANSVSWNPHKMLGAPLQCSILLIKEKGLLHQANATAATYLFQQDKFYDVSFDTGDKSVQCGRKVD-AFKLWLMWKARGNL  233 (448)
Q Consensus       155 aD~~~~s~hK~l~~P~g~G~l~vr~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~g~~  233 (448)
                      +|++++|+|||+++|.|||++++|++..+.......+.|+..         ++..++++++|+.. .+.+|+.++.+|..
T Consensus       265 aDSi~~s~HK~~~~p~g~g~l~~r~~~~~~~~~~~~~~yl~~---------~~~~~~~~~sr~~~~~~~~~~~l~~~G~~  335 (450)
T d1pmma_         265 VKSISASGHKFGLAPLGCGWVIWRDEEALPQELVFNVDYLGG---------QIGTFAINFSRPAGQVIAQYYEFLRLGRE  335 (450)
T ss_dssp             EEEEEEETTTTTCCCSSCEEEEESSGGGSCGGGCEEEEETTE---------EEEECCSCCSCBSHHHHHHHHHHHHHHHH
T ss_pred             eeEeecChhhccCCCCCeeEEEecChhhhhhhcccccCcCCC---------CcCCCcccCccchHHHHHHHHHHhhhhHH
Confidence            999999999999999999999999987766655555666642         12345677788754 34567666666666


Q ss_pred             HHHHHHHHhhhhccCCCccchhhhhhhhhhhhhhhhhhhhhhhccccccccccCCCCCccccccchhhHHHHHHHHHhcC
Q psy14299        234 GFRHFVDNAVDCSRGSMTFSTLLCFDLQGLLHQANATAATYLFQQDKFYDVSFDTGDKSVQCGRKVDAFKLWLMWKARGN  313 (448)
Q Consensus       234 g~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  313 (448)
                      |+++                                                                            
T Consensus       336 G~~~----------------------------------------------------------------------------  339 (450)
T d1pmma_         336 GYTK----------------------------------------------------------------------------  339 (450)
T ss_dssp             HHHH----------------------------------------------------------------------------
T ss_pred             HHHH----------------------------------------------------------------------------
Confidence            6555                                                                            


Q ss_pred             ccHHHHHHHHHHHHHHHHHHhhcCCCeEEecc---CCceeeEEEEeeccCCCccccchhhhhhhhhhhHHHHHHHHhCCc
Q psy14299        314 LGFRHFVDNAVDCSRYFLSQISQRPGFRLVIP---EFQCTNICFWFIPVSLRDKVEDETWWSTLSKVAPRIKEKLVLGGT  390 (448)
Q Consensus       314 ~G~~~~~~~~~~l~~~~~~~L~~~pg~~l~~~---~~~~~~v~f~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~L~~~g~  390 (448)
                           +.++..++++++.++|+++|+|+++.+   .+..++|+|++.+....+.            ...++.+.|.++|+
T Consensus       340 -----~~~~~~~la~~l~~~L~~~~~~el~~~~~p~~~l~~V~Fr~~~~~~~~~------------~~~~l~~~L~~~Gw  402 (450)
T d1pmma_         340 -----VQNASYQVAAYLADEIAKLGPYEFICTGRPDEGIPAVCFKLKDGEDPGY------------TLYDLSERLRLRGW  402 (450)
T ss_dssp             -----HHHHHHHHHHHHHHHHHTTSCEEEEEECCTTTBSSEEEEEECTTCCCSS------------CHHHHHHHHHTTTC
T ss_pred             -----HHHHHHHHHHHHHHHHHhCCCeEEEeCCCCCCceEEEEEecCCcccCCC------------CHHHHHHHHHHcCC
Confidence                 556677789999999999999999831   3457889999875332211            01267889999997


Q ss_pred             EEEEeeecCCcccccEEEEEecCCCCCCHHHHHHHHHHHHHHHHHhHH
Q psy14299        391 LMIGYQPLQHRNLHNFFRLVTTCHPASSRQDMDYAIDQIELRGAEVDL  438 (448)
Q Consensus       391 ~~~~~~~~~g~~~~~~lRis~~~~~~~t~edid~l~~al~~~~~~~~~  438 (448)
                      ++..+...........+|+++  ...+|++++|+|++.|+++.+.+.+
T Consensus       403 ~v~~~~~p~~~~~~~~lRvvv--~~~~t~e~~d~lv~dl~~~v~~l~~  448 (450)
T d1pmma_         403 QVPAFTLGGEATDIVVMRIMC--RRGFEMDFAELLLEDYKASLKYLSD  448 (450)
T ss_dssp             BCCEEECCTTCTTCEEEEEEC--CTTCCHHHHHHHHHHHHHHHHHHHH
T ss_pred             eeeccCcCCCcCCcEEEEEEc--cCCCCHHHHHHHHHHHHHHHHHHHh
Confidence            654333222222236899999  5789999999999999999988764

>d1jf9a_ c.67.1.3 (A:) NifS-like protein/selenocysteine lyase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: Cystathionine synthase-like
domain: NifS-like protein/selenocysteine lyase
species: Escherichia coli [TaxId: 562]

Probab=99.97  E-value=2.8e-30  Score=261.17  Aligned_cols=306  Identities=15%  Similarity=0.120  Sum_probs=223.4

Q ss_pred             cEEEeCcHHHHHHHHHHHHH-HhcCCcccccCCCCCCCeEEEecCCCchHHHHHHH----HhCCCCCcEEEEecCCCCCc
Q psy14299          4 KPFLLPGGSISNMYSICLAR-YRLDPDTKRKGLSHLPPLCMFTSEDSHYSMLKAAH----WLGIGMDNVIRVKTNERGQM   78 (448)
Q Consensus         4 ~g~~t~ggT~an~~al~~a~-~~~~~~~~~~G~~~~~~~~Vl~~~~~H~s~~~~~~----~~g~~~~~v~~v~~~~~g~i   78 (448)
                      ..+||+|+|+++...+.... ...           .+++.|+++..+|+|+..+++    ..|+   +++.+|++++|.+
T Consensus        86 ~i~~~~~~T~~~~~~~~~~~~~~~-----------~~g~~il~~~~e~~s~~~~~~~~a~~~g~---~v~~~~~~~~g~~  151 (405)
T d1jf9a_          86 ELVFVRGTTEGINLVANSWGNSNV-----------RAGDNIIISQMEHHANIVPWQMLCARVGA---ELRVIPLNPDGTL  151 (405)
T ss_dssp             GEEEESSHHHHHHHHHHHHHHHHC-----------CTTCEEEEETTCCGGGTHHHHHHHHHHTC---EEEEECBCTTSCB
T ss_pred             cccccCcHHHHHHHHHhccccccc-----------CCCCEEEEEeCcccchHHHHHHHHHHcCc---EEEEECCCCCCcC
Confidence            57899999999776655422 221           267789999999999665554    4577   8999999999999


Q ss_pred             CHHHHHHHHHHhhhcCCCcEEEEEeccCCccccccCHHHHHHHHHHcCCEEEEecccccccccccchhhhhcCCCCccEE
Q psy14299         79 ICSFLEQTIQTSLAEKKIPLFVNATAGTTVLGAFDPLDEIATVCEKYDLWMHVDACWGGSLIFSEKYSFVLKGINRANSV  158 (448)
Q Consensus        79 d~e~Le~~l~~~~~~~~~~~lVv~~~~~t~tG~~~~l~~I~~ia~~~g~~l~VD~A~~~~~~~~~~~~~~~~~~~~aD~~  158 (448)
                      |++.+++++.+      ++++|++++.++.+|.+.|+++|+++||++|++++||++|+.+..+++....      .+|++
T Consensus       152 ~~~~~~~~i~~------~t~lv~~~~v~~~tG~~~pi~~i~~~~~~~g~~~~vD~~q~~g~~~id~~~~------~~D~~  219 (405)
T d1jf9a_         152 QLETLPTLFDE------KTRLLAITHVSNVLGTENPLAEMITLAHQHGAKVLVDGAQAVMHHPVDVQAL------DCDFY  219 (405)
T ss_dssp             CGGGHHHHCCT------TEEEEEEESBCTTTCCBCCHHHHHHHHHHTTCEEEEECTTTTTTSCCCHHHH------TCSEE
T ss_pred             CHHHHHHhccC------CcEEEEEecCCCcccccCchHHhhhHHHHcCCeeecccceeccccccchhhc------CCcee
Confidence            99999988765      6899999999999999999999999999999999999999999987764322      47999


Q ss_pred             EECCccccCCCCceEEEEEeccchhhhhccCCcccccccCcccccccCCCCCcccCCCCchhHHHHHHHHHhChHHHHHH
Q psy14299        159 SWNPHKMLGAPLQCSILLIKEKGLLHQANATAATYLFQQDKFYDVSFDTGDKSVQCGRKVDAFKLWLMWKARGNLGFRHF  238 (448)
Q Consensus       159 ~~s~hK~l~~P~g~G~l~vr~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~g~~~~  238 (448)
                      ++++|||+ +|.|+|+++++++. +....+..........    .......                             
T Consensus       220 ~~s~hK~~-Gp~G~g~l~v~~~~-~~~~~~~~~~~~~~~~----~~~~~~~-----------------------------  264 (405)
T d1jf9a_         220 VFSGHKLY-GPTGIGILYVKEAL-LQEMPPWEGGGSMIAT----VSLSEGT-----------------------------  264 (405)
T ss_dssp             EEEGGGTT-SCSSCEEEEECHHH-HTTCCCSSCSSSSEEE----CCTTTCC-----------------------------
T ss_pred             eccccccc-cCCCceeeeechhh-hcccCcccccccccCc----ccccccc-----------------------------
Confidence            99999995 69999999997753 3322111111110000    0000000                             


Q ss_pred             HHHhhhhccCCCccchhhhhhhhhhhhhhhhhhhhhhhccccccccccCCCCCccc--cccchhhHHHHHHHHHhcCccH
Q psy14299        239 VDNAVDCSRGSMTFSTLLCFDLQGLLHQANATAATYLFQQDKFYDVSFDTGDKSVQ--CGRKVDAFKLWLMWKARGNLGF  316 (448)
Q Consensus       239 i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~G~  316 (448)
                                                                    ......+.++  ..+...++++..++++....|+
T Consensus       265 ----------------------------------------------~~~~~~~r~e~GT~~~~~~~~l~~al~~~~~~g~  298 (405)
T d1jf9a_         265 ----------------------------------------------TWTKAPWRFEAGTPNTGGIIGLGAALEYVSALGL  298 (405)
T ss_dssp             ----------------------------------------------EECCTTGGGCCSSCCHHHHHHHHHHHHHHHHHCH
T ss_pred             ----------------------------------------------ccccchhhhcCCCCcHHHHHHHHHHHHHHHHhCh
Confidence                                                          0000111122  1225667778888899999999


Q ss_pred             HHHHHHHHHHHHHHHHHhhcCCCeEEeccCCceeeEEEEeeccCCCccccchhhhhhhhhhhHHHHHHHHhCCcEEEEee
Q psy14299        317 RHFVDNAVDCSRYFLSQISQRPGFRLVIPEFQCTNICFWFIPVSLRDKVEDETWWSTLSKVAPRIKEKLVLGGTLMIGYQ  396 (448)
Q Consensus       317 ~~~~~~~~~l~~~~~~~L~~~pg~~l~~~~~~~~~v~f~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~L~~~g~~~~~~~  396 (448)
                      +.+.++...+.+++.+.++.++...+..+..+.++++|.+.  +..               ...+.+.|.+.| +.+..+
T Consensus       299 ~~i~~~~~~L~~~~~~~l~~~~~~~~~~~~~r~~ivsf~~~--~~~---------------~~~~~~~L~~~g-I~v~~G  360 (405)
T d1jf9a_         299 NNIAEYEQNLMHYALSQLESVPDLTLYGPQNRLGVIAFNLG--KHH---------------AYDVGSFLDNYG-IAVRTG  360 (405)
T ss_dssp             HHHHHHHHHHHHHHHHHHTTSTTEEEESCTTCCSEEEEEET--TCC---------------HHHHHHHHHHTT-EECEEE
T ss_pred             HHHHHHHHHHHHHHHhhhhcCCcccccCCcCcCcEEEEEcC--CCC---------------HHHHHHHHHHCC-cEEEcc
Confidence            99999999999999999999988887734456788888753  221               125677787888 555433


Q ss_pred             ecCC------cccccEEEEEecCCCCCCHHHHHHHHHHHHHHHHHh
Q psy14299        397 PLQH------RNLHNFFRLVTTCHPASSRQDMDYAIDQIELRGAEV  436 (448)
Q Consensus       397 ~~~g------~~~~~~lRis~~~~~~~t~edid~l~~al~~~~~~~  436 (448)
                      ....      .+.++++|+|+  |+|||++|||+++++|+++.+-+
T Consensus       361 ~~c~~~~~~~~~~~g~iRiS~--~~ynt~eDid~l~~~l~~i~r~~  404 (405)
T d1jf9a_         361 HHCAMPLMAYYNVPAMCRASL--AMYNTHEEVDRLVTGLQRIHRLL  404 (405)
T ss_dssp             CTTCHHHHHHTTCSCEEEEEC--CTTCCHHHHHHHHHHHHHHHHHH
T ss_pred             chhhhhHHHhcCCCCEEEEEC--CCCCCHHHHHHHHHHHHHHHHhc
Confidence            2110      01247899999  89999999999999999998754

>d1t3ia_ c.67.1.3 (A:) Probable cysteine desulfurase SufS {Synechocystis sp. PCC 6803 [TaxId: 1148]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: Cystathionine synthase-like
domain: Probable cysteine desulfurase SufS
species: Synechocystis sp. PCC 6803 [TaxId: 1148]

Probab=99.97  E-value=5.4e-29  Score=251.88  Aligned_cols=306  Identities=16%  Similarity=0.112  Sum_probs=220.1

Q ss_pred             cEEEeCcHHHHHHHHHHHHH-HhcCCcccccCCCCCCCeEEEecCCCchHHHHHHH----HhCCCCCcEEEEecCCCCCc
Q psy14299          4 KPFLLPGGSISNMYSICLAR-YRLDPDTKRKGLSHLPPLCMFTSEDSHYSMLKAAH----WLGIGMDNVIRVKTNERGQM   78 (448)
Q Consensus         4 ~g~~t~ggT~an~~al~~a~-~~~~~~~~~~G~~~~~~~~Vl~~~~~H~s~~~~~~----~~g~~~~~v~~v~~~~~g~i   78 (448)
                      ..+||+++|+++.+.+.... ...           .+++.|+++..+|+++..+++    ..|.   .+..+|.+.++..
T Consensus        86 ~i~~~~~tt~~~n~~~~~~~~~~~-----------~~g~~il~s~~e~~s~~~~~~~~~~~~g~---~v~~~~~~~~~~~  151 (408)
T d1t3ia_          86 EIVYTRNATEAINLVAYSWGMNNL-----------KAGDEIITTVMEHHSNLVPWQMVAAKTGA---VLKFVQLDEQESF  151 (408)
T ss_dssp             GEEEESSHHHHHHHHHHHTHHHHC-----------CTTCEEEEETTCCGGGTHHHHHHHHHHCC---EEEEECBCTTSSB
T ss_pred             cEEeecchHHHHHHHHhhcccccc-----------CCCCEEEeecccchhhhhhhhhhhhccCc---eEeeeeccccccc
Confidence            36888999999766554322 221           267789999999998765554    4466   7999999999999


Q ss_pred             CHHHHHHHHHHhhhcCCCcEEEEEeccCCccccccCHHHHHHHHHHcCCEEEEecccccccccccchhhhhcCCCCccEE
Q psy14299         79 ICSFLEQTIQTSLAEKKIPLFVNATAGTTVLGAFDPLDEIATVCEKYDLWMHVDACWGGSLIFSEKYSFVLKGINRANSV  158 (448)
Q Consensus        79 d~e~Le~~l~~~~~~~~~~~lVv~~~~~t~tG~~~~l~~I~~ia~~~g~~l~VD~A~~~~~~~~~~~~~~~~~~~~aD~~  158 (448)
                      +.+.+++++++      ++++|++++.++.+|.+.|+++|+++||++|+++|||++|++|..+++....      .+|++
T Consensus       152 ~~~~l~~~~~~------~t~lv~i~~~~~~tG~~~p~~~i~~~~~~~g~~~ivDa~q~~g~~~id~~~~------~~D~~  219 (408)
T d1t3ia_         152 DLEHFKTLLSE------KTKLVTVVHISNTLGCVNPAEEIAQLAHQAGAKVLVDACQSAPHYPLDVQLI------DCDWL  219 (408)
T ss_dssp             CHHHHHHHCCT------TEEEEEEESBCTTTCBBCCHHHHHHHHHHTTCEEEEECTTTTTTSCCCHHHH------TCSEE
T ss_pred             cHHHhhhccCC------CceEEEEecccccccccCcHHHHhhhhhccCceeeeccceeccccccccccc------CCceE
Confidence            99999998855      6899999999999999999999999999999999999999999998764322      47999


Q ss_pred             EECCccccCCCCceEEEEEeccchhhhhccCCcccccccCcccccccCCCCCcc-cCCCCchhHHHHHHHHHhChHHHHH
Q psy14299        159 SWNPHKMLGAPLQCSILLIKEKGLLHQANATAATYLFQQDKFYDVSFDTGDKSV-QCGRKVDAFKLWLMWKARGNLGFRH  237 (448)
Q Consensus       159 ~~s~hK~l~~P~g~G~l~vr~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~g~~g~~~  237 (448)
                      ++++|||+ +|.|+|+++++++.. ...    +++..+........  ...+.. ...+++                   
T Consensus       220 ~~s~hK~~-gp~G~g~l~v~~~~~-~~~----~p~~~g~~~~~~~~--~~~~~~~~~~~r~-------------------  272 (408)
T d1t3ia_         220 VASGHKMC-APTGIGFLYGKEEIL-EAM----PPFFGGGEMIAEVF--FDHFTTGELPHKF-------------------  272 (408)
T ss_dssp             EEEGGGTT-SCTTCEEEEECHHHH-HHS----CCCSCSTTSEEEEC--SSCEEECCTTGGG-------------------
T ss_pred             Eecccccc-CCCCccccccchhhh-hcC----CceecCCccccccc--ccccccCCchhhh-------------------
Confidence            99999995 699999999987642 221    22221111000000  000000 000010                   


Q ss_pred             HHHHhhhhccCCCccchhhhhhhhhhhhhhhhhhhhhhhccccccccccCCCCCccccccchhhHHHHHHHHHhcCccHH
Q psy14299        238 FVDNAVDCSRGSMTFSTLLCFDLQGLLHQANATAATYLFQQDKFYDVSFDTGDKSVQCGRKVDAFKLWLMWKARGNLGFR  317 (448)
Q Consensus       238 ~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~  317 (448)
                                                                            +....+.+.++++..+++++...|++
T Consensus       273 ------------------------------------------------------e~Gt~~~~~~~~l~~al~~~~~~g~~  298 (408)
T d1t3ia_         273 ------------------------------------------------------EAGTPAIAEAIALGAAVDYLTDLGME  298 (408)
T ss_dssp             ------------------------------------------------------CCSSCCHHHHHHHHHHHHHHHHHCHH
T ss_pred             ------------------------------------------------------cCCcHHHHHHHHHHHHHHHHHHcCHH
Confidence                                                                  01112245567778888888899999


Q ss_pred             HHHHHHHHHHHHHHHHhhcCCCeEEeccC----CceeeEEEEeeccCCCccccchhhhhhhhhhhHHHHHHHHhCCcEEE
Q psy14299        318 HFVDNAVDCSRYFLSQISQRPGFRLVIPE----FQCTNICFWFIPVSLRDKVEDETWWSTLSKVAPRIKEKLVLGGTLMI  393 (448)
Q Consensus       318 ~~~~~~~~l~~~~~~~L~~~pg~~l~~~~----~~~~~v~f~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~L~~~g~~~~  393 (448)
                      ++.++...+.+++.+.+.++|++.+++..    ...++++|.+..  ++               ..++.+.|.++| +.+
T Consensus       299 ~i~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~iv~f~~~~--~~---------------~~~v~~~L~~~g-I~v  360 (408)
T d1t3ia_         299 NIHNYEVELTHYLWQGLGQIPQLRLYGPNPKHGDRAALASFNVAG--LH---------------ASDVATMVDQDG-IAI  360 (408)
T ss_dssp             HHHHHHHHHHHHHHHHHHTCTTEEEESCCGGGSCBCSEEEEEETT--BC---------------HHHHHHHHHTTT-EEC
T ss_pred             HHHHHHHHHHhHHhhhhccCccccccCCCccccCcceEEEEEeCC--CC---------------HHHHHHHHhhCC-cEE
Confidence            99999999999999999999999988422    235788887532  22               136778888888 555


Q ss_pred             EeeecCC------cccccEEEEEecCCCCCCHHHHHHHHHHHHHHHHHh
Q psy14299        394 GYQPLQH------RNLHNFFRLVTTCHPASSRQDMDYAIDQIELRGAEV  436 (448)
Q Consensus       394 ~~~~~~g------~~~~~~lRis~~~~~~~t~edid~l~~al~~~~~~~  436 (448)
                      ..+....      .+.++++|||+  |+|||++|||+++++|+++.+.+
T Consensus       361 ~~G~~c~~~~~~~~~~~g~vRiS~--~~ynt~~did~li~~L~~~~~~f  407 (408)
T d1t3ia_         361 RSGHHCTQPLHRLFDASGSARASL--YFYNTKEEIDLFLQSLQATIRFF  407 (408)
T ss_dssp             BCSCTTCHHHHHHTTCCCCEEEEC--CTTCCHHHHHHHHHHHHHHHHHT
T ss_pred             ecCcccccHHHHhhcCCccEEEEC--CCCCCHHHHHHHHHHHHHHHHHh
Confidence            4321100      01136899999  89999999999999999998764

>d3bc8a1 c.67.1.9 (A:23-467) Selenocysteinyl-tRNA synthase (SepSecS) {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: SepSecS-like
domain: Selenocysteinyl-tRNA synthase (SepSecS)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.97  E-value=7.3e-30  Score=260.63  Aligned_cols=170  Identities=15%  Similarity=0.095  Sum_probs=135.2

Q ss_pred             ccEEEeCcHHHHHHHHH-HHHHHhcCCcccccCCCCCCCeEEEecCCCchHHHHHHHHhCCCCCcEEEEecCCCCCcCHH
Q psy14299          3 LKPFLLPGGSISNMYSI-CLARYRLDPDTKRKGLSHLPPLCMFTSEDSHYSMLKAAHWLGIGMDNVIRVKTNERGQMICS   81 (448)
Q Consensus         3 ~~g~~t~ggT~an~~al-~~a~~~~~~~~~~~G~~~~~~~~Vl~~~~~H~s~~~~~~~~g~~~~~v~~v~~~~~g~id~e   81 (448)
                      ..|++|+|||+++++++ .+++.+.           .+++.|++|..+|+|+.++++++|++...+..++.++++.+|++
T Consensus       113 ~~~~~~~~~t~~~~~~~l~a~~~~~-----------~~~~~vi~~~~~H~s~~~a~~~~g~~~~~v~~~~~~~~~~id~~  181 (445)
T d3bc8a1         113 ASCFVVPMATGMSLTLCFLTLRHKR-----------PKAKYIIWPRIDQKSCFKSMVTAGFEPVVIENVLEGDELRTDLK  181 (445)
T ss_dssp             CEEEEESSCHHHHHHHHHHHHHHHC-----------TTCCEEEEECCCCHHHHHHHHHTTCEEEEECCEEETTEEECCHH
T ss_pred             cCccccccchHHHHHHHHHHHHHhC-----------CCCCEEEEcCcccHHHHHHHHHcCCeeEEEEeeccCcccccCHH
Confidence            57899999997765554 4444431           24567999999999999999999994333333455678999999


Q ss_pred             HHHHHHHHhhhcCCCcEEEEEeccCCccccccCHHHHHHHHHHcCCEEEEecccccccccccchhhhhcCCCCccEEEEC
Q psy14299         82 FLEQTIQTSLAEKKIPLFVNATAGTTVLGAFDPLDEIATVCEKYDLWMHVDACWGGSLIFSEKYSFVLKGINRANSVSWN  161 (448)
Q Consensus        82 ~Le~~l~~~~~~~~~~~lVv~~~~~t~tG~~~~l~~I~~ia~~~g~~l~VD~A~~~~~~~~~~~~~~~~~~~~aD~~~~s  161 (448)
                      +|+++|++..+.  ++.+|+++++++++|.++|+++|+++|++||+|+|||+|++++..+..........++.+|+++++
T Consensus       182 ~l~~~i~~~~~~--~~~~v~~~~~~~~~G~~~~~~~i~~~~~~~~~~l~vD~a~~~~~~~~~~~~~~~~~~~~vd~~~~s  259 (445)
T d3bc8a1         182 AVEAKIQELGPE--HILCLHSTTACFAPRVPDRLEELAVICANYDIPHVVNNAYGLQSSKCMHLIQQGARVGRIDAFVQS  259 (445)
T ss_dssp             HHHHHHHHHCGG--GEEEEEEESSCCTTBCCCCHHHHHHHHHHHTCCEEEECTTTTTCHHHHHHHHHHHHHSCCCEEEEE
T ss_pred             HHHHHHHhcccc--CeEEEEEeCCCCCCeeehhHHHHHHHHHHhCCcEEEEccchhhhhhccccchhccCcCCcceEEec
Confidence            999999874332  478999999999999999999999999999999999999998876554433333334568999999


Q ss_pred             CccccCCCCceEEEEEeccchhhh
Q psy14299        162 PHKMLGAPLQCSILLIKEKGLLHQ  185 (448)
Q Consensus       162 ~hK~l~~P~g~G~l~vr~~~~~~~  185 (448)
                      +||++++|.|+|+++++++.....
T Consensus       260 ~hK~~~~p~g~~~l~~~~~~~~~~  283 (445)
T d3bc8a1         260 LDKNFMVPVGGAIIAGFNEPFIQD  283 (445)
T ss_dssp             HHHHHSCCSSCEEEEESCHHHHHH
T ss_pred             CccccccCCCCceeeeCChHHHHH
Confidence            999999999999999988765443

>d1elua_ c.67.1.3 (A:) Cystine C-S lyase C-des {Synechocystis sp. [TaxId: 1143]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: Cystathionine synthase-like
domain: Cystine C-S lyase C-des
species: Synechocystis sp. [TaxId: 1143]

Probab=99.96  E-value=1.2e-28  Score=246.12  Aligned_cols=297  Identities=13%  Similarity=0.099  Sum_probs=205.8

Q ss_pred             cEEEeCcHHHHHHHHHHHHHHhcCCcccccCCCCCCCeEEEecCCCchHHHHHHH----HhCCCCCcEEEEecCCCCCcC
Q psy14299          4 KPFLLPGGSISNMYSICLARYRLDPDTKRKGLSHLPPLCMFTSEDSHYSMLKAAH----WLGIGMDNVIRVKTNERGQMI   79 (448)
Q Consensus         4 ~g~~t~ggT~an~~al~~a~~~~~~~~~~~G~~~~~~~~Vl~~~~~H~s~~~~~~----~~g~~~~~v~~v~~~~~g~id   79 (448)
                      ..+||+|+|+++.+++...+.+             +++.|+++..+|+|+..+++    ..|+   .+..+|.+.+...+
T Consensus        69 ~i~~~~g~t~a~~~~~~~l~~~-------------~g~~i~~~~~~~~s~~~~~~~~~~~~g~---~~~~v~~~~~~~~~  132 (381)
T d1elua_          69 TITITDNVTTGCDIVLWGLDWH-------------QGDEILLTDCEHPGIIAIVQAIAARFGI---TYRFFPVAATLNQG  132 (381)
T ss_dssp             GEEEESSHHHHHHHHHHHSCCC-------------TTCEEEEETTCCHHHHHHHHHHHHHHCC---EEEEECCGGGSSSS
T ss_pred             cEEEECChHHHhhhcchhhhhc-------------CCceEEEeccccceeeeccccccccccc---cccccccccccccc
Confidence            4789999999988887654332             66788999999998776554    3466   78888876544332


Q ss_pred             --HHHHHHHHHHhhhcCCCcEEEEEeccCCccccccCHHHHHHHHHHc----CCEEEEecccccccccccchhhhhcCCC
Q psy14299         80 --CSFLEQTIQTSLAEKKIPLFVNATAGTTVLGAFDPLDEIATVCEKY----DLWMHVDACWGGSLIFSEKYSFVLKGIN  153 (448)
Q Consensus        80 --~e~Le~~l~~~~~~~~~~~lVv~~~~~t~tG~~~~l~~I~~ia~~~----g~~l~VD~A~~~~~~~~~~~~~~~~~~~  153 (448)
                        .+.++++++      ++++++++++++|++|.+.|+++|.++||+|    +++++||++|+.+..+.+..     .+ 
T Consensus       133 ~~~~~l~~~i~------~~t~~v~i~~~~n~tG~~~~~~~I~~l~~~~~~~~~~~~~vD~~~~~g~~~~~~~-----~~-  200 (381)
T d1elua_         133 DAAAVLANHLG------PKTRLVILSHLLWNTGQVLPLAEIMAVCRRHQGNYPVRVLVDGAQSAGSLPLDFS-----RL-  200 (381)
T ss_dssp             CHHHHHHTTCC------TTEEEEEEESBCTTTCCBCCHHHHHHHHHHCCSSSCCEEEEECTTTBTTBCCCTT-----TS-
T ss_pred             hHHHHHHhhhc------ccccccccccccccccccchhhHHHHHHhhccccccccccccccccccccccccc-----cc-
Confidence              334444332      3689999999999999999999999999985    68999999999998765532     22 


Q ss_pred             CccEEEECCccccCCCCceEEEEEeccchhhhhccCCcccccccCcccccccCCCCCcccCCCCchhHHHHHHHHHhChH
Q psy14299        154 RANSVSWNPHKMLGAPLQCSILLIKEKGLLHQANATAATYLFQQDKFYDVSFDTGDKSVQCGRKVDAFKLWLMWKARGNL  233 (448)
Q Consensus       154 ~aD~~~~s~hK~l~~P~g~G~l~vr~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~  233 (448)
                      .+|++++++|||+++|.|+|+++++++.. ....   +.+............    ...                     
T Consensus       201 ~~D~~~~s~~K~~~~p~G~g~l~~~~~~~-~~~~---p~~~~~~~~~~~~~~----~~~---------------------  251 (381)
T d1elua_         201 EVDYYAFTGHKWFAGPAGVGGLYIHGDCL-GEIN---PTYVGWRSITYGAKG----EPT---------------------  251 (381)
T ss_dssp             CCSEEEEESSSTTCCCTTCEEEEECTTTG-GGCC---CCSCCTTTEEECTTS----CEE---------------------
T ss_pred             ccccccccccccccccchhhHHHhhHHHH-HhcC---ccccccccccccccc----ccc---------------------
Confidence            58999999999999999999999977643 3221   111111000000000    000                     


Q ss_pred             HHHHHHHHhhhhccCCCccchhhhhhhhhhhhhhhhhhhhhhhccccccccccCCCCCcccc--ccchhhHHHHHHHHHh
Q psy14299        234 GFRHFVDNAVDCSRGSMTFSTLLCFDLQGLLHQANATAATYLFQQDKFYDVSFDTGDKSVQC--GRKVDAFKLWLMWKAR  311 (448)
Q Consensus       234 g~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~  311 (448)
                                                                         .+......+..  .....++++..+++.+
T Consensus       252 ---------------------------------------------------~~~~~~~~~~~gt~~~~~~~~~~~a~~~~  280 (381)
T d1elua_         252 ---------------------------------------------------GWAEGGKRFEVATSAYPQYAGLLAALQLH  280 (381)
T ss_dssp             ---------------------------------------------------EECSGGGGGCCSCCCHHHHHHHHHHHHHH
T ss_pred             ---------------------------------------------------cccccccccccccccchhhhhhhhhhhhH
Confidence                                                               00000011111  1134456666777777


Q ss_pred             cCccH-HHHHHHHHHHHHHHHHHhhcCCCeEEec-cCCceeeEEEEeeccCCCccccchhhhhhhhhhhHHHHHHHHhCC
Q psy14299        312 GNLGF-RHFVDNAVDCSRYFLSQISQRPGFRLVI-PEFQCTNICFWFIPVSLRDKVEDETWWSTLSKVAPRIKEKLVLGG  389 (448)
Q Consensus       312 ~~~G~-~~~~~~~~~l~~~~~~~L~~~pg~~l~~-~~~~~~~v~f~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~L~~~g  389 (448)
                      ..+|. +.+.++..++++++.+.|+++||++++. ..++.++++|.+...  .              -.+.+.+.|.++|
T Consensus       281 ~~~g~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~vsf~~~~~--~--------------~~~~i~~~L~~~g  344 (381)
T d1elua_         281 QRQGTAEERYQAICQRSEFLWRGLNQLPHVHCLATSAPQAGLVSFTVDSP--L--------------GHRAIVQKLEEQR  344 (381)
T ss_dssp             HHHCCHHHHHHHHHHHHHHHHHHHHHSTTEEESCSSCCSSSEEEEEECSS--S--------------CHHHHHHHHHHTT
T ss_pred             HHhcccccchhhhhhHHHHHHHHHhcCCCeEecCCCCccccEEEEEcCCC--C--------------CHHHHHHHHHhCC
Confidence            77775 5557889999999999999999999983 235678899976321  1              0236788899999


Q ss_pred             cEEEEeeecCCcccccEEEEEecCCCCCCHHHHHHHHHHHHHH
Q psy14299        390 TLMIGYQPLQHRNLHNFFRLVTTCHPASSRQDMDYAIDQIELR  432 (448)
Q Consensus       390 ~~~~~~~~~~g~~~~~~lRis~~~~~~~t~edid~l~~al~~~  432 (448)
                       +.+...  .+   ++++|+|+  |++||++|||+|+++|+++
T Consensus       345 -i~v~~~--~~---~~~lRis~--~~~nt~edid~ll~~l~e~  379 (381)
T d1elua_         345 -IYLRTI--AD---PDCIRACC--HYITDEEEINHLLARLADF  379 (381)
T ss_dssp             -EECEEE--TT---TTEEEEEC--CTTCCHHHHHHHHHHHTTC
T ss_pred             -cEEEec--CC---CCEEEEec--CCCCCHHHHHHHHHHHHhh
Confidence             444322  22   37899999  8999999999999999875

>d2z67a1 c.67.1.9 (A:1-434) Selenocysteinyl-tRNA synthase (SepSecS) {Methanococcus maripaludis [TaxId: 39152]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: SepSecS-like
domain: Selenocysteinyl-tRNA synthase (SepSecS)
species: Methanococcus maripaludis [TaxId: 39152]

Probab=99.96  E-value=7.2e-29  Score=252.58  Aligned_cols=294  Identities=15%  Similarity=0.126  Sum_probs=202.2

Q ss_pred             CccEEEeCcHHH-HHHHHHHHHHHhcCCcccccCCCCCCCeEEEecCCCchHHHHHHHHhCCCCCcEEEEecCCCCCcCH
Q psy14299          2 NLKPFLLPGGSI-SNMYSICLARYRLDPDTKRKGLSHLPPLCMFTSEDSHYSMLKAAHWLGIGMDNVIRVKTNERGQMIC   80 (448)
Q Consensus         2 ~~~g~~t~ggT~-an~~al~~a~~~~~~~~~~~G~~~~~~~~Vl~~~~~H~s~~~~~~~~g~~~~~v~~v~~~~~g~id~   80 (448)
                      +.++.++++||. ++..++++.|..            .++..|++|+..|+|+.+++.+.|++...+..++.++.+.+|+
T Consensus       129 ~~~~~~~~~~t~~~~~~~l~a~r~~------------~~~~~vi~s~~~H~s~~k~~~~~g~~~~~v~~~~~~~~~~~d~  196 (434)
T d2z67a1         129 NVHAIATPISTGMSISLCLSAARKK------------YGSNVVIYPYASHKSPIKAVSFVGMNMRLVETVLDGDRVYVPV  196 (434)
T ss_dssp             CCEEEEESSCHHHHHHHHHHHHHHH------------HCCCEEEEECCCCHHHHHHHHHTTCEEEEECCEEETTEEECCH
T ss_pred             CcceeecCcHHHHHHHHHHHHHHHh------------hcCceEEEeccCCHHHHHHHHHhCCcceEEEeecCCCccCCCH
Confidence            455667766665 455566665543            1556799999999999999999999543333445566789999


Q ss_pred             HHHHHHHHHhhhcCCCcEEEEEeccCCccccccCHHHHHHHHHHcCCEEEEecccccccccccchhhhhcCCCCccEEEE
Q psy14299         81 SFLEQTIQTSLAEKKIPLFVNATAGTTVLGAFDPLDEIATVCEKYDLWMHVDACWGGSLIFSEKYSFVLKGINRANSVSW  160 (448)
Q Consensus        81 e~Le~~l~~~~~~~~~~~lVv~~~~~t~tG~~~~l~~I~~ia~~~g~~l~VD~A~~~~~~~~~~~~~~~~~~~~aD~~~~  160 (448)
                      ++|+++|++..+.+ .+.+|+++.+++.+|.++|+++|+++|++||+|+|||+||+++....+...... +..++|++++
T Consensus       197 ~~l~~~i~~~~~~~-~~~~v~~~~~~~~~g~~~~l~~i~~~~~~~~~~l~vD~a~g~~~~~~~~~~~~~-~~~~~D~~~~  274 (434)
T d2z67a1         197 EDIENAIKKEIELG-NRPCVLSTLTFFPPRNSDDIVEIAKICENYDIPHIINGAYAIQNNYYLEKLKKA-FKYRVDAVVS  274 (434)
T ss_dssp             HHHHHHHHHHHHTT-CCEEEEEESSCCTTBCCCCHHHHHHHHHHHTCCEEEECTTTTTCHHHHHHHHHH-HTSCCSEEEE
T ss_pred             HHHHHHHHhhhhcC-CceEEEeccCcCCCccccCHHHHHHHHHHhCCeEEEeccchhhhhhcccccccc-ccCCcceEEE
Confidence            99999998865544 566899999999999999999999999999999999999998765444333222 2236899999


Q ss_pred             CCccccCCCCceEEEEEeccchhhhhccCCcccccccCcccccccCCCCCcccCCCCchhHHHHHHHHHhChHHHHHHHH
Q psy14299        161 NPHKMLGAPLQCSILLIKEKGLLHQANATAATYLFQQDKFYDVSFDTGDKSVQCGRKVDAFKLWLMWKARGNLGFRHFVD  240 (448)
Q Consensus       161 s~hK~l~~P~g~G~l~vr~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~g~~~~i~  240 (448)
                      ++||++++|.|+|+++++++..+......   +.                  ..+.......+|+.+..+          
T Consensus       275 s~hK~l~~~~g~~~~~~~~~~~~~~~~~~---~~------------------~~~~~~~~~~~~a~l~~~----------  323 (434)
T d2z67a1         275 SSDKNLLTPIGGGLVYSTDAEFIKEISLS---YP------------------GRASATPVVNTLVSLLSM----------  323 (434)
T ss_dssp             EHHHHHCCCSSCEEEEESCHHHHHHHHTT---SC------------------SCBCSHHHHHHHHHHHHH----------
T ss_pred             cCccccccCCCccccccCcHHHHHHHHhh---cc------------------cccccchHHHHHHHHHHH----------
Confidence            99999999999999999887655443211   00                  001112233344444444          


Q ss_pred             HhhhhccCCCccchhhhhhhhhhhhhhhhhhhhhhhccccccccccCCCCCccccccchhhHHHHHHHHHhcCccHHHHH
Q psy14299        241 NAVDCSRGSMTFSTLLCFDLQGLLHQANATAATYLFQQDKFYDVSFDTGDKSVQCGRKVDAFKLWLMWKARGNLGFRHFV  320 (448)
Q Consensus       241 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~  320 (448)
                                                                                             +.+|++.+.
T Consensus       324 -----------------------------------------------------------------------~~~g~~~~~  332 (434)
T d2z67a1         324 -----------------------------------------------------------------------GSKNYLELV  332 (434)
T ss_dssp             -----------------------------------------------------------------------HHHHHHHHH
T ss_pred             -----------------------------------------------------------------------HHhcchhHH
Confidence                                                                                   444555566


Q ss_pred             HHHHHHHHHHHHHhhcC---CCeEEeccCCceeeEEEEeeccCCCccccchhhhhhhhhhhHHHHHHHHhCCcE---EEE
Q psy14299        321 DNAVDCSRYFLSQISQR---PGFRLVIPEFQCTNICFWFIPVSLRDKVEDETWWSTLSKVAPRIKEKLVLGGTL---MIG  394 (448)
Q Consensus       321 ~~~~~l~~~~~~~L~~~---pg~~l~~~~~~~~~v~f~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~L~~~g~~---~~~  394 (448)
                      ++..+++++++++|+++   .+++++ ..+....+.+...   .               ...++...|.+.|+.   +..
T Consensus       333 ~~~~~~a~~l~~~L~~l~~~~g~~ll-~~~~~~~~~~~~~---~---------------~~~~l~~~L~~~gI~g~~v~~  393 (434)
T d2z67a1         333 KNQKNSKKLLDELLNDLSKKTGGKFL-DVESPIASCISVN---S---------------DPVEIAAKLYNLRVTGPRGIK  393 (434)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHSSCCBC-CCCCSSEEEEECS---S---------------CHHHHHHHHHHTTEESCEEEC
T ss_pred             HHHHHHHHHHHHHHHHhhhhcCceec-CCCCCceeeeecC---C---------------CHHHHHHHHHHcCCeeeehhh
Confidence            66677788888877765   366766 4444444444321   1               123677888888832   111


Q ss_pred             ee-----ecCCcccccEEEEEecCCCCCCHHHHHHHHHHHHHH
Q psy14299        395 YQ-----PLQHRNLHNFFRLVTTCHPASSRQDMDYAIDQIELR  432 (448)
Q Consensus       395 ~~-----~~~g~~~~~~lRis~~~~~~~t~edid~l~~al~~~  432 (448)
                      +.     ...+.....++|+++  +.++|+||||+++++|+++
T Consensus       394 ~l~~~g~~~~~~~~~~~l~~~~--s~~~T~edID~~i~~L~kI  434 (434)
T d2z67a1         394 KTDHFGNCYLGTYTHDYIVMNA--AIGVRTEDIVNSVSKLEKI  434 (434)
T ss_dssp             TTCHHHHTCSSCCSCCEEEEEC--CTTCCHHHHHHHHHHHHTC
T ss_pred             hccccCeeeecccCCCeEEEec--CCCCCHHHHHHHHHHHhcC
Confidence            11     111222347899999  7899999999999999864

>d2e7ja1 c.67.1.9 (A:8-371) Selenocysteinyl-tRNA synthase (SepSecS) {Archaeoglobus fulgidus [TaxId: 2234]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: SepSecS-like
domain: Selenocysteinyl-tRNA synthase (SepSecS)
species: Archaeoglobus fulgidus [TaxId: 2234]

Probab=99.95  E-value=1.2e-25  Score=222.00  Aligned_cols=153  Identities=18%  Similarity=0.201  Sum_probs=131.7

Q ss_pred             cEEEeCcHHHHHHHHHHHHHHhcCCcccccCCCCCCCeEEEecCCCchHHHHHHHHhCCCCCcEEEEecCC--CCCcCHH
Q psy14299          4 KPFLLPGGSISNMYSICLARYRLDPDTKRKGLSHLPPLCMFTSEDSHYSMLKAAHWLGIGMDNVIRVKTNE--RGQMICS   81 (448)
Q Consensus         4 ~g~~t~ggT~an~~al~~a~~~~~~~~~~~G~~~~~~~~Vl~~~~~H~s~~~~~~~~g~~~~~v~~v~~~~--~g~id~e   81 (448)
                      .+++|+|||+||+.++.+..+              +++.|++++.+|+|+..+++..|.   ++..+|+++  ++.+|++
T Consensus        64 ~~~~t~g~t~a~~~~~~al~~--------------~gd~Vi~~~~~h~s~~~~~~~~g~---~v~~v~~~~~~~~~i~~~  126 (364)
T d2e7ja1          64 VARVTNGAREAKFAVMHSLAK--------------KDAWVVMDENCHYSSYVAAERAGL---NIALVPKTDYPDYAITPE  126 (364)
T ss_dssp             EEEEESSHHHHHHHHHHHHCC--------------TTCEEEEETTCCHHHHHHHHHTTC---EEEEECCCCTTTCCCCHH
T ss_pred             EEEEECcHHHHHHHHHHHHhC--------------CCcEEEeecccccccchHHHhccc---eEEEeeeccccccccCHH
Confidence            368999999999999877643              678899999999999999999999   788999864  5789999


Q ss_pred             HHHHHHHHhhhcCCCcEEEEEeccCCccccccCHHHHHHHHHHcCCEEEEecccccccccccchhhhhcCCCCccEEEEC
Q psy14299         82 FLEQTIQTSLAEKKIPLFVNATAGTTVLGAFDPLDEIATVCEKYDLWMHVDACWGGSLIFSEKYSFVLKGINRANSVSWN  161 (448)
Q Consensus        82 ~Le~~l~~~~~~~~~~~lVv~~~~~t~tG~~~~l~~I~~ia~~~g~~l~VD~A~~~~~~~~~~~~~~~~~~~~aD~~~~s  161 (448)
                      ++++.+++..+ ..++.+|++++++|++|.+.|+++|+++|++||+++|+|+||+.+.++.+....      .+|++++|
T Consensus       127 ~l~~~i~~~~k-~~~~~lv~i~~~~n~tG~~~~l~~I~~ia~~~~i~livD~a~~~g~~~~~~~~~------g~D~~~~S  199 (364)
T d2e7ja1         127 NFAQTIEETKK-RGEVVLALITYPDGNYGNLPDVKKIAKVCSEYDVPLLVNGAYAIGRMPVSLKEI------GADFIVGS  199 (364)
T ss_dssp             HHHHHHHHHTT-TSCEEEEEEESSCTTTCCCCCHHHHHHHHHTTTCCEEEECTTTBTTBCCCHHHH------TCSEEEEE
T ss_pred             HHHhhhhhhcc-cCCceEEEeecCCCCCceeecchhheeccccccchhhccccchhhhhhhccccc------ccceeeec
Confidence            99999987533 235778999999999999999999999999999999999999988876543221      37999999


Q ss_pred             CccccCCCCceEEEEEecc
Q psy14299        162 PHKMLGAPLQCSILLIKEK  180 (448)
Q Consensus       162 ~hK~l~~P~g~G~l~vr~~  180 (448)
                      +||++++|.++|+++.+++
T Consensus       200 ~~K~~~~~g~~g~l~~~~~  218 (364)
T d2e7ja1         200 GHKSMAASGPIGVMGMKEE  218 (364)
T ss_dssp             HHHHSSCCSSCEEEEECTT
T ss_pred             cccccCCCCCEEEEEECHH
Confidence            9999999999999888664

>d1h0ca_ c.67.1.3 (A:) Alanine-glyoxylate aminotransferase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: Cystathionine synthase-like
domain: Alanine-glyoxylate aminotransferase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.94  E-value=3.3e-26  Score=228.77  Aligned_cols=306  Identities=12%  Similarity=0.101  Sum_probs=211.8

Q ss_pred             cEEEeCcHHHHHHHHHHHHHHhcCCcccccCCCCCCCeEEEecCCCchHHHHH--HHHhCCCCCcEEEEecCCCCCcCHH
Q psy14299          4 KPFLLPGGSISNMYSICLARYRLDPDTKRKGLSHLPPLCMFTSEDSHYSMLKA--AHWLGIGMDNVIRVKTNERGQMICS   81 (448)
Q Consensus         4 ~g~~t~ggT~an~~al~~a~~~~~~~~~~~G~~~~~~~~Vl~~~~~H~s~~~~--~~~~g~~~~~v~~v~~~~~g~id~e   81 (448)
                      ..+||.|||+++..++.....              +++.+++....|.+....  +...+.   .+..++.++.+.+|.+
T Consensus        72 ~ii~~gsgT~a~~~~i~~l~~--------------~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~  134 (388)
T d1h0ca_          72 TLVISGSGHCALEAALVNVLE--------------PGDSFLVGANGIWGQRAVDIGERIGA---RVHPMTKDPGGHYTLQ  134 (388)
T ss_dssp             EEEESSCHHHHHHHHHHHHCC--------------SSCCEEECBSSHHHHHHHHHHHHHC-----CBCCBCCTTCCCCHH
T ss_pred             EEEEcCcHHHHHHHHHHHhhc--------------cCCceeeecccceeeeeccccccccc---cccccccCCccccchH
Confidence            478899999998888776543              455577777888875433  344455   4667777788899999


Q ss_pred             HHHHHHHHhhhcCCCcEEEEEeccCCccccccCHHHHHHHHHHcCCEEEEecccccccccccchhhhhcCCCCccEEEEC
Q psy14299         82 FLEQTIQTSLAEKKIPLFVNATAGTTVLGAFDPLDEIATVCEKYDLWMHVDACWGGSLIFSEKYSFVLKGINRANSVSWN  161 (448)
Q Consensus        82 ~Le~~l~~~~~~~~~~~lVv~~~~~t~tG~~~~l~~I~~ia~~~g~~l~VD~A~~~~~~~~~~~~~~~~~~~~aD~~~~s  161 (448)
                      .+++.+...     ++++|++++.+|.+|.++|+++|+++||+||++++||++++.+..+.+...     . .+|+++++
T Consensus       135 ~~~~~~~~~-----~~~~v~~~~~~n~tG~i~pi~~i~~~~~~~g~~~~vD~~qs~g~~~~d~~~-----~-~~D~~~~s  203 (388)
T d1h0ca_         135 EVEEGLAQH-----KPVLLFLTHGESSTGVLQPLDGFGELCHRYKCLLLVDSVASLGGTPLYMDR-----Q-GIDILYSG  203 (388)
T ss_dssp             HHHHHHHHH-----CCSEEEEESEETTTTEECCCTTHHHHHHTTTCEEEEECTTTTTTSCCCTTT-----T-TCSEEEEE
T ss_pred             HHHHHhccC-----CcceEEEeeeeeccccccCHHHHHHHhhcccccceeccccccccccccccc-----c-ccceeccc
Confidence            999988763     578999999999999999999999999999999999999999988765322     2 58999999


Q ss_pred             CccccCCCCceEEEEEeccchhhhhccCCc----ccccccCcccccccCCCCCcccCCCCchhHHHHHHHHHhChHHHHH
Q psy14299        162 PHKMLGAPLQCSILLIKEKGLLHQANATAA----TYLFQQDKFYDVSFDTGDKSVQCGRKVDAFKLWLMWKARGNLGFRH  237 (448)
Q Consensus       162 ~hK~l~~P~g~G~l~vr~~~~~~~~~~~~~----~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~g~~~  237 (448)
                      +|||+++|.|+|+++++++. +........    .|+....                           ....        
T Consensus       204 ~~K~~~gp~g~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~---------------------------~~~~--------  247 (388)
T d1h0ca_         204 SQKALNAPPGTSLISFSDKA-KKKMYSRKTKPFSFYLDIKW---------------------------LANF--------  247 (388)
T ss_dssp             SSSTTCCCTTCEEEEECHHH-HHHHTTCSSCCSCSTTCHHH---------------------------HHHH--------
T ss_pred             ccccccCCCceEEEeecHHH-HHhhhhccccccccccccch---------------------------hhhh--------
Confidence            99999999999999997753 332211111    0110000                           0000        


Q ss_pred             HHHHhhhhccCCCccchhhhhhhhhhhhhhhhhhhhhhhccccccccccCCCCCccccccchhhHHHHHHHHHhcCccHH
Q psy14299        238 FVDNAVDCSRGSMTFSTLLCFDLQGLLHQANATAATYLFQQDKFYDVSFDTGDKSVQCGRKVDAFKLWLMWKARGNLGFR  317 (448)
Q Consensus       238 ~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~  317 (448)
                                                                   ............-.......++..+++++.+.|++
T Consensus       248 ---------------------------------------------~~~~~~~~~~~~t~~~~~~~~~~~al~~~~~~g~~  282 (388)
T d1h0ca_         248 ---------------------------------------------WGCDDQPRMYHHTIPVISLYSLRESLALIAEQGLE  282 (388)
T ss_dssp             ---------------------------------------------TTCSSSCCCCCSCCCHHHHHHHHHHHHHHHHHCHH
T ss_pred             ---------------------------------------------hhhccccccccccccHHHHHHHHHHHHHHHHhccc
Confidence                                                         00000000111112244456667778888889999


Q ss_pred             HHHHHHHHHHHHHHHHhhcCCCeEEeccCC--ce-eeEEEEeeccCCCccccchhhhhhhhhhhHHHHHHHHhCCcEEEE
Q psy14299        318 HFVDNAVDCSRYFLSQISQRPGFRLVIPEF--QC-TNICFWFIPVSLRDKVEDETWWSTLSKVAPRIKEKLVLGGTLMIG  394 (448)
Q Consensus       318 ~~~~~~~~l~~~~~~~L~~~pg~~l~~~~~--~~-~~v~f~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~L~~~g~~~~~  394 (448)
                      .+.++...+.+++++.+... |+.++..++  ++ ++++|.+ |.+++               ..++.+.|.+++.+.+.
T Consensus       283 ~~~~~~~~l~~~l~~~~~~~-g~~~~~~~~~~rs~~i~~~~~-p~~~~---------------~~~~~~~L~~~~gI~v~  345 (388)
T d1h0ca_         283 NSWRQHREAAAYLHGRLQAL-GLQLFVKDPALRLPTVTTVAV-PAGYD---------------WRDIVSYVIDHFDIEIM  345 (388)
T ss_dssp             HHHHHHHHHHHHHHHHHHHH-TCCBSSCSGGGBCTTEEEEEC-CTTCC---------------HHHHHHHHHHHHCEECE
T ss_pred             cccccccchhHHHHHHHhhc-CcccccCCHHHcCCeEEEEEC-CCCCC---------------HHHHHHHHHhcCCEEEe
Confidence            99999999999999999987 665542222  23 4566654 44443               23778888776335554


Q ss_pred             eeecCCcccccEEEEEecCCCCCCHHHHHHHHHHHHHHHHHhHH
Q psy14299        395 YQPLQHRNLHNFFRLVTTCHPASSRQDMDYAIDQIELRGAEVDL  438 (448)
Q Consensus       395 ~~~~~g~~~~~~lRis~~~~~~~t~edid~l~~al~~~~~~~~~  438 (448)
                      .+..  ...++.||||++ ++++|+||||+++++|+++.+++++
T Consensus       346 ~G~~--~~~~~~iRis~~-g~~~t~edid~li~aL~~~L~~l~k  386 (388)
T d1h0ca_         346 GGLG--PSTGKVLRIGLL-GCNATRENVDRVTEALRAALQHCPK  386 (388)
T ss_dssp             ECCG--GGTTTEEEEECC-GGGCSHHHHHHHHHHHHHHHHHSCC
T ss_pred             CCch--hhcCCEEEEeCC-CCCCCHHHHHHHHHHHHHHHHHhcc
Confidence            3321  111368999965 6899999999999999999998764

>d1p3wa_ c.67.1.3 (A:) Cysteine desulfurase IscS {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: Cystathionine synthase-like
domain: Cysteine desulfurase IscS
species: Escherichia coli [TaxId: 562]

Probab=99.94  E-value=5.1e-25  Score=220.63  Aligned_cols=152  Identities=18%  Similarity=0.253  Sum_probs=128.3

Q ss_pred             cEEEeCcHHHHHHHHHHHHHHhcCCcccccCCCCCCCeEEEecCCCchHHHHHHHHh---CCCCCcEEEEecCCCCCcCH
Q psy14299          4 KPFLLPGGSISNMYSICLARYRLDPDTKRKGLSHLPPLCMFTSEDSHYSMLKAAHWL---GIGMDNVIRVKTNERGQMIC   80 (448)
Q Consensus         4 ~g~~t~ggT~an~~al~~a~~~~~~~~~~~G~~~~~~~~Vl~~~~~H~s~~~~~~~~---g~~~~~v~~v~~~~~g~id~   80 (448)
                      ..+||+|+|+++..++.+......          .+++.|++++.+|.++...++.+   |+   ++..+|.++++.+|+
T Consensus        67 ~I~~~~~~t~~l~~~~~~~~~~~~----------~~gd~Vv~~~~~~~s~~~~~~~~~~~G~---~v~~v~~~~~~~~d~  133 (391)
T d1p3wa_          67 EIVFTSGATESDNLAIKGAANFYQ----------KKGKHIITSKTEHKAVLDTCRQLEREGF---EVTYLAPQRNGIIDL  133 (391)
T ss_dssp             GEEEESSHHHHHHHHHHHHHHHHG----------GGCCEEEEETTSCHHHHHHHHHHHHTTC---EEEEECCCTTSCCCH
T ss_pred             cEEEECCHHHHHHHHHhhhhhhhc----------CCCCEEEEeccccchHHHHHHHHHHcCC---EEEEeCCCCCCeEcH
Confidence            478999999998777765543211          26778999999999987766544   55   899999999999999


Q ss_pred             HHHHHHHHHhhhcCCCcEEEEEeccCCccccccCHHHHHHHHHHcCCEEEEecccccccccccchhhhhcCCCCccEEEE
Q psy14299         81 SFLEQTIQTSLAEKKIPLFVNATAGTTVLGAFDPLDEIATVCEKYDLWMHVDACWGGSLIFSEKYSFVLKGINRANSVSW  160 (448)
Q Consensus        81 e~Le~~l~~~~~~~~~~~lVv~~~~~t~tG~~~~l~~I~~ia~~~g~~l~VD~A~~~~~~~~~~~~~~~~~~~~aD~~~~  160 (448)
                      +++++++++      +|++|++++++|+||.+.|+++|+++||+||++++||++|+.+..+.+...     . .+|++++
T Consensus       134 ~~~~~~i~~------~T~lv~is~~~n~tG~~~~~~~I~~~~~~~~~~~ivD~~~~~g~~~~d~~~-----~-~~D~~~~  201 (391)
T d1p3wa_         134 KELEAAMRD------DTILVSIMHVNNEIGVVQDIAAIGEMCRARGIIYHVDATQSVGKLPIDLSQ-----L-KVDLMSF  201 (391)
T ss_dssp             HHHHHHCCT------TEEEEECCSBCTTTCCBCCHHHHHHHHHHHTCEEEEECTTTBTTBCCCTTT-----S-CCSEEEE
T ss_pred             HHHHHhCCC------CcEEEEEECCCCCCeeECCHHHHHHHhccCCcEEEEeeccccCCccccchh-----c-ccccccc
Confidence            999999965      689999999999999999999999999999999999999999988766432     1 4799999


Q ss_pred             CCccccCCCCceEEEEEeccc
Q psy14299        161 NPHKMLGAPLQCSILLIKEKG  181 (448)
Q Consensus       161 s~hK~l~~P~g~G~l~vr~~~  181 (448)
                      ++|||+ +|.|+|+++++++.
T Consensus       202 s~~k~~-g~~g~g~~~~~~~~  221 (391)
T d1p3wa_         202 SGHKIY-GPKGIGALYVRRKP  221 (391)
T ss_dssp             ESTTTT-SCSSCEEEEECBTT
T ss_pred             cccccc-CCCceEEEEEecch
Confidence            999995 68899999997763

>d1qz9a_ c.67.1.3 (A:) Kynureninase {Pseudomonas fluorescens [TaxId: 294]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: Cystathionine synthase-like
domain: Kynureninase
species: Pseudomonas fluorescens [TaxId: 294]

Probab=99.93  E-value=6.5e-25  Score=220.25  Aligned_cols=303  Identities=10%  Similarity=-0.012  Sum_probs=195.6

Q ss_pred             cEEEeCcHHHHHHHHHHHHHHhcCCcccccCCCCCCCeEEEecCCCchHHHHHHHHhCCCCCcEEEEecCCCCCcCHHHH
Q psy14299          4 KPFLLPGGSISNMYSICLARYRLDPDTKRKGLSHLPPLCMFTSEDSHYSMLKAAHWLGIGMDNVIRVKTNERGQMICSFL   83 (448)
Q Consensus         4 ~g~~t~ggT~an~~al~~a~~~~~~~~~~~G~~~~~~~~Vl~~~~~H~s~~~~~~~~g~~~~~v~~v~~~~~g~id~e~L   83 (448)
                      ..+||+++|+++...+..+....    ...    .++..|++++..|++........+.   ++..++.+.++..+++.+
T Consensus        89 ei~~~~~~T~~~~~~~~~~~~~~----~~~----~~~~~vi~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~  157 (404)
T d1qz9a_          89 EVVVTDTTSINLFKVLSAALRVQ----ATR----SPERRVIVTETSNFPTDLYIAEGLA---DMLQQGYTLRLVDSPEEL  157 (404)
T ss_dssp             SEEECSCHHHHHHHHHHHHHHHH----HHH----STTCCEEEEETTSCHHHHHHHHHHH---HHHCSSCEEEEESSGGGH
T ss_pred             cEEEecCchHHHHHHhhhhhhhh----ccc----CCCcEEEEeccccchHHHHHHhhhh---eeeeeceeccccccchhH
Confidence            57899999999766554322110    000    1344566666777665544443333   233333344566788999


Q ss_pred             HHHHHHhhhcCCCcEEEEEeccCCccccccCHHHHHHHHHHcCCEEEEecccccccccccchhhhhcCCCCccEEEECCc
Q psy14299         84 EQTIQTSLAEKKIPLFVNATAGTTVLGAFDPLDEIATVCEKYDLWMHVDACWGGSLIFSEKYSFVLKGINRANSVSWNPH  163 (448)
Q Consensus        84 e~~l~~~~~~~~~~~lVv~~~~~t~tG~~~~l~~I~~ia~~~g~~l~VD~A~~~~~~~~~~~~~~~~~~~~aD~~~~s~h  163 (448)
                      ++++++      ++++|++++.++.+|.+.|+++|+++||++|++++||++|+.+..+.+....      .+|++++++|
T Consensus       158 ~~~i~~------~T~lV~i~~v~~~tG~~~pv~~i~~~~~~~~~~~~vD~~q~~g~~~~~~~~~------~~d~~~~s~~  225 (404)
T d1qz9a_         158 PQAIDQ------DTAVVMLTHVNYKTGYMHDMQALTALSHECGALAIWDLAHSAGAVPVDLHQA------GADYAIGCTY  225 (404)
T ss_dssp             HHHCST------TEEEEEEESBCTTTCBBCCHHHHHHHHHHHTCEEEEECTTTTTTSCCCHHHH------TCSEEEECSS
T ss_pred             HHhcCC------CceEEEEecccccccceecHHHHhccccccccceeEEeeccccccccccccc------cceEEEEech
Confidence            988865      6899999999999999999999999999999999999999999987664322      4799999999


Q ss_pred             cccCCCCc-eEEEEEeccchhhhhccCCcccccccCcccccccCCCCCcc-cCCCCchhHHHHHHHHHhChHHHHHHHHH
Q psy14299        164 KMLGAPLQ-CSILLIKEKGLLHQANATAATYLFQQDKFYDVSFDTGDKSV-QCGRKVDAFKLWLMWKARGNLGFRHFVDN  241 (448)
Q Consensus       164 K~l~~P~g-~G~l~vr~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~g~~g~~~~i~~  241 (448)
                      ||+++|+| +|+++.++. .+.........+..... ...   ....... ...+++                       
T Consensus       226 K~~~~~~g~~g~~~~~~~-~~~~~~~~~~~~~~~~~-~~~---~~~~~~~~~~~~~~-----------------------  277 (404)
T d1qz9a_         226 KYLNGGPGSQAFVWVSPQ-LCDLVPQPLSGWFGHSR-QFA---MEPRYEPSNGIARY-----------------------  277 (404)
T ss_dssp             STTCCCTTCCCEEEECTT-TTTTSCCSCCCGGGBCT-TSC---CCSSCCBCSSGGGG-----------------------
T ss_pred             hhcccCCceEEEEEechh-hhhhCCccccccCCccc-ccc---ccccccccccchhh-----------------------
Confidence            99877665 666666554 33332111111111100 000   0000000 000000                       


Q ss_pred             hhhhccCCCccchhhhhhhhhhhhhhhhhhhhhhhccccccccccCCCCCccccccchhhHHHHHHHHHhcCccHHHHHH
Q psy14299        242 AVDCSRGSMTFSTLLCFDLQGLLHQANATAATYLFQQDKFYDVSFDTGDKSVQCGRKVDAFKLWLMWKARGNLGFRHFVD  321 (448)
Q Consensus       242 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~  321 (448)
                                                                        ...............++..+...|.+.+.+
T Consensus       278 --------------------------------------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~  307 (404)
T d1qz9a_         278 --------------------------------------------------LCGTQPITSLAMVECGLDVFAQTDMASLRR  307 (404)
T ss_dssp             --------------------------------------------------CCSCCCHHHHHHHHHHHHHHTTSCHHHHHH
T ss_pred             --------------------------------------------------hhhhccchhHHHHHHHHHHHHHhhHHHHHH
Confidence                                                              001111334555666777888888888888


Q ss_pred             HHHHHHHHHHH---HhhcCCCeEEeccC----CceeeEEEEeeccCCCccccchhhhhhhhhhhHHHHHHHHhCCcEEEE
Q psy14299        322 NAVDCSRYFLS---QISQRPGFRLVIPE----FQCTNICFWFIPVSLRDKVEDETWWSTLSKVAPRIKEKLVLGGTLMIG  394 (448)
Q Consensus       322 ~~~~l~~~~~~---~L~~~pg~~l~~~~----~~~~~v~f~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~L~~~g~~~~~  394 (448)
                      +...+.+++.+   .+...+|++++ .+    .+.++++|....                   ..++.+.|.++| +++.
T Consensus       308 ~~~~~~~~~~~l~~~~~~~~~~~i~-~p~~~~~r~~~vsf~~~~-------------------~~~v~~~L~~~g-i~~~  366 (404)
T d1qz9a_         308 KSLALTDLFIELVEQRCAAHELTLV-TPREHAKRGSHVSFEHPE-------------------GYAVIQALIDRG-VIGD  366 (404)
T ss_dssp             HHHHHHHHHHHHHHHHHTTSCCEEC-SCSSGGGBCSEEEEECTT-------------------HHHHHHHHHTTT-EECE
T ss_pred             HHHHhHHHHHHHHHhhccCCCEEEE-CCCCccceeeEEEEecCC-------------------HHHHHHHHHHCC-CEEe
Confidence            77777776554   45567899998 43    236788886421                   136889999998 4332


Q ss_pred             eeecCCcccccEEEEEecCCCCCCHHHHHHHHHHHHHHHHH
Q psy14299        395 YQPLQHRNLHNFFRLVTTCHPASSRQDMDYAIDQIELRGAE  435 (448)
Q Consensus       395 ~~~~~g~~~~~~lRis~~~~~~~t~edid~l~~al~~~~~~  435 (448)
                      .   ..   +++||||++ |.|||++|||+++++|+++.++
T Consensus       367 ~---r~---~~~lRiS~~-h~ynt~~did~~~~~L~~vl~~  400 (404)
T d1qz9a_         367 Y---RE---PRIMRFGFT-PLYTTFTEVWDAVQILGEILDR  400 (404)
T ss_dssp             E---ET---TTEEEEECC-TTTCCHHHHHHHHHHHHHHHHH
T ss_pred             e---cC---CCeEEEECC-CCCCCHHHHHHHHHHHHHHHHh
Confidence            2   12   268999996 6799999999999999999875

>d1eg5a_ c.67.1.3 (A:) NifS-like protein/selenocysteine lyase {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: Cystathionine synthase-like
domain: NifS-like protein/selenocysteine lyase
species: Thermotoga maritima [TaxId: 2336]

Probab=99.92  E-value=4.5e-23  Score=205.12  Aligned_cols=152  Identities=19%  Similarity=0.271  Sum_probs=125.0

Q ss_pred             cEEEeCcHHHHHHHHHHHHHHhcCCcccccCCCCCCCeEEEecCCCchHHHHHHHHh---CCCCCcEEEEecCCCCCcCH
Q psy14299          4 KPFLLPGGSISNMYSICLARYRLDPDTKRKGLSHLPPLCMFTSEDSHYSMLKAAHWL---GIGMDNVIRVKTNERGQMIC   80 (448)
Q Consensus         4 ~g~~t~ggT~an~~al~~a~~~~~~~~~~~G~~~~~~~~Vl~~~~~H~s~~~~~~~~---g~~~~~v~~v~~~~~g~id~   80 (448)
                      ..+|++|+|+++..++........          .++..|+++...|.+.....+..   |.   +++.+|.++++.+|+
T Consensus        63 ~i~~~~~~T~~l~~~~~~~~~~~~----------~~g~~v~~~~~~~~~~~~~~~~~~~~g~---~v~~vp~~~~~~id~  129 (376)
T d1eg5a_          63 EIFFTSCATESINWILKTVAETFE----------KRKRTIITTPIEHKAVLETMKYLSMKGF---KVKYVPVDSRGVVKL  129 (376)
T ss_dssp             GEEEESCHHHHHHHHHHHHHHHTT----------TTCCEEEECTTSCHHHHHHHHHHHHTTC---EEEECCBCTTSCBCH
T ss_pred             cEEEECCHHHHHHhhhhccccccc----------ccCcccccccccchhhHHHHHHHHhcCC---EEEEEcCCCCCeECH
Confidence            579999999997777654332211          25667888888888877666544   66   899999999999999


Q ss_pred             HHHHHHHHHhhhcCCCcEEEEEeccCCccccccCHHHHHHHHHHc--CCEEEEecccccccccccchhhhhcCCCCccEE
Q psy14299         81 SFLEQTIQTSLAEKKIPLFVNATAGTTVLGAFDPLDEIATVCEKY--DLWMHVDACWGGSLIFSEKYSFVLKGINRANSV  158 (448)
Q Consensus        81 e~Le~~l~~~~~~~~~~~lVv~~~~~t~tG~~~~l~~I~~ia~~~--g~~l~VD~A~~~~~~~~~~~~~~~~~~~~aD~~  158 (448)
                      +++++++++      ++++|+++++++.+|.+.|++++.++++.+  |+.++||++|+.+..+.+-..     . .+|++
T Consensus       130 ~~l~~~i~~------~t~lv~is~v~~~tG~~~~~~~i~~~~~~~~~~~~~~vD~~q~~g~~~~d~~~-----~-~~D~~  197 (376)
T d1eg5a_         130 EELEKLVDE------DTFLVSIMAANNEVGTIQPVEDVTRIVKKKNKETLVHVDAVQTIGKIPFSLEK-----L-EVDYA  197 (376)
T ss_dssp             HHHHHHCCT------TEEEEEEESBCTTTCBBCCHHHHHHHHHHHCTTCEEEEECTTTTTTSCCCCTT-----T-CCSEE
T ss_pred             HHHHHhcCC------CceEEEEECCccccceeeeehhhhhhhhhcccCceeEEEeeeccccccccccc-----c-Cccce
Confidence            999999965      689999999999999999999999999666  899999999999998766322     2 48999


Q ss_pred             EECCccccCCCCceEEEEEeccc
Q psy14299        159 SWNPHKMLGAPLQCSILLIKEKG  181 (448)
Q Consensus       159 ~~s~hK~l~~P~g~G~l~vr~~~  181 (448)
                      ++++|||+ +|.|+|+++++++.
T Consensus       198 ~~s~~K~~-gp~G~~~l~~~~~~  219 (376)
T d1eg5a_         198 SFSAHKFH-GPKGVGITYIRKGV  219 (376)
T ss_dssp             EEEGGGGT-SCTTCEEEEECTTS
T ss_pred             ecccceee-cCCCceeEEeccCc
Confidence            99999995 79999999997764

>d2bkwa1 c.67.1.3 (A:3-384) Alanine-glyoxylate aminotransferase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: Cystathionine synthase-like
domain: Alanine-glyoxylate aminotransferase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.92  E-value=1.2e-23  Score=209.73  Aligned_cols=307  Identities=13%  Similarity=0.054  Sum_probs=211.0

Q ss_pred             EEEeCcHHHHHHHHHHHHHHhcCCcccccCCCCCCCeEEEecCCCchHHH--HHHHHhCCCCCcEEEEec-CCCCCcCHH
Q psy14299          5 PFLLPGGSISNMYSICLARYRLDPDTKRKGLSHLPPLCMFTSEDSHYSML--KAAHWLGIGMDNVIRVKT-NERGQMICS   81 (448)
Q Consensus         5 g~~t~ggT~an~~al~~a~~~~~~~~~~~G~~~~~~~~Vl~~~~~H~s~~--~~~~~~g~~~~~v~~v~~-~~~g~id~e   81 (448)
                      .+||.|||+++..++.......           .+++.|++....|++..  ..++..+.   .+..+.. +.+...+.+
T Consensus        60 i~~t~sgT~a~~~~~~~l~~~~-----------~~gd~vlv~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~  125 (382)
T d2bkwa1          60 FVLAGSGTLGWDIFASNFILSK-----------APNKNVLVVSTGTFSDRFADCLRSYGA---QVDVVRPLKIGESVPLE  125 (382)
T ss_dssp             EEEESCTTHHHHHHHHHHSCTT-----------CSCCEEEEECSSHHHHHHHHHHHHTTC---EEEEECCSSTTSCCCHH
T ss_pred             EEEeCcHHHHHHHHHHHHHHhc-----------CCCCceEEEEechhhhhhhhhcccccc---ccccccccCCCCccchh
Confidence            7899999999888776653321           26677888888888754  44445555   4555554 344578899


Q ss_pred             HHHHHHHHhhhcCCCcEEEEEeccCCccccccCHHHHHHHHHHcC--CEEEEecccccccccccchhhhhcCCCCccEEE
Q psy14299         82 FLEQTIQTSLAEKKIPLFVNATAGTTVLGAFDPLDEIATVCEKYD--LWMHVDACWGGSLIFSEKYSFVLKGINRANSVS  159 (448)
Q Consensus        82 ~Le~~l~~~~~~~~~~~lVv~~~~~t~tG~~~~l~~I~~ia~~~g--~~l~VD~A~~~~~~~~~~~~~~~~~~~~aD~~~  159 (448)
                      .+++.+.+     .+++++++++.++.+|...|+++++++|++++  +++|||++++++..+++...      ..+|+++
T Consensus       126 ~~~~~~~~-----~~~~~v~~~~~~~~tg~~~~~~~~~~~~~~~~~~~~~~vDa~qs~g~~pid~~~------~giD~~~  194 (382)
T d2bkwa1         126 LITEKLSQ-----NSYGAVTVTHVDTSTAVLSDLKAISQAIKQTSPETFFVVDAVCSIGCEEFEFDE------WGVDFAL  194 (382)
T ss_dssp             HHHHHHHH-----SCCSEEEEESEETTTTEECCHHHHHHHHHHHCTTSEEEEECTTTTTTSCCCTTT------TTCSEEE
T ss_pred             HHHHHhhh-----ccchheeeeeccccccccccchhhhhhccccccceeeeeecccccccccccccc------cCeeEEe
Confidence            99988866     36789999999999999999999999998875  99999999999999776432      1589999


Q ss_pred             ECCccccCCCCceEEEEEeccchhhhhccCC-----cccccccCcccccccCCCCCcccCCCCchhHHHHHHHHHhChHH
Q psy14299        160 WNPHKMLGAPLQCSILLIKEKGLLHQANATA-----ATYLFQQDKFYDVSFDTGDKSVQCGRKVDAFKLWLMWKARGNLG  234 (448)
Q Consensus       160 ~s~hK~l~~P~g~G~l~vr~~~~~~~~~~~~-----~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~g  234 (448)
                      +++|||+++|+|+|+++++++.+ .......     ..|+..                        ..           .
T Consensus       195 ~s~~K~l~gP~G~g~l~vs~~~~-~~~~~~~~~~~~~~~~~~------------------------~~-----------~  238 (382)
T d2bkwa1         195 TASQKAIGAPAGLSISLCSSRFM-DYALNDSKNGHVHGYFSS------------------------LR-----------R  238 (382)
T ss_dssp             EESSSTTCCCSCEEEEEECHHHH-HHHTCHHHHCCCSCSTTC------------------------HH-----------H
T ss_pred             ecccccCcCCCchhhhhccHHHH-hhhhhcccCCCcccchhh------------------------hh-----------h
Confidence            99999999999999999988643 3221110     111100                        00           0


Q ss_pred             HHHHHHHhhhhccCCCccchhhhhhhhhhhhhhhhhhhhhhhccccccccccCCCCCccccccchhhHHHHHHHHHhcCc
Q psy14299        235 FRHFVDNAVDCSRGSMTFSTLLCFDLQGLLHQANATAATYLFQQDKFYDVSFDTGDKSVQCGRKVDAFKLWLMWKARGNL  314 (448)
Q Consensus       235 ~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  314 (448)
                      +........                                           ...+....-++...+.++..+++++.++
T Consensus       239 ~~~~~~~~~-------------------------------------------~~~~~~~~Tp~~~~i~al~~aL~~~~~~  275 (382)
T d2bkwa1         239 WTPIMENYE-------------------------------------------AGKGAYFATPPVQLINSLDVALKEILEE  275 (382)
T ss_dssp             HHHHHHHHH-------------------------------------------TTCCCCSSCCCHHHHHHHHHHHHHHHHH
T ss_pred             hhhhhhccc-------------------------------------------ccccccccCCcHHHHHHHHHHHHHHHHh
Confidence            000000000                                           0011111223355677888899999999


Q ss_pred             cHHHHHHHHHHHHHHHHHHhhcCCCeEEecc-CC--c-eeeEEEEeeccCCCccccchhhhhhhhhhhHHHHHHHHhCCc
Q psy14299        315 GFRHFVDNAVDCSRYFLSQISQRPGFRLVIP-EF--Q-CTNICFWFIPVSLRDKVEDETWWSTLSKVAPRIKEKLVLGGT  390 (448)
Q Consensus       315 G~~~~~~~~~~l~~~~~~~L~~~pg~~l~~~-~~--~-~~~v~f~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~L~~~g~  390 (448)
                      |++.+.++..++++++++.+...+++..+.. ++  . .++++|.. |.                  ..++.+.|.++| 
T Consensus       276 g~~~~~~~~~~l~~~l~~~l~~~~~~~~~~~~~~~~~s~~v~~~~~-~~------------------~~~~~~~L~~~g-  335 (382)
T d2bkwa1         276 GLHKRWDLHREMSDWFKDSLVNGLQLTSVSRYPSNMSAHGLTAVYV-AD------------------PPDVIAFLKSHG-  335 (382)
T ss_dssp             CHHHHHHHHHHHHHHHHHHHHTTTCCEESSCSSSTTBCSSCEEEEC-SC------------------HHHHHHHHHHTT-
T ss_pred             hhhhhHHHHHHHHHHHHHHhhhcccccccccCchhccCCcEEEEcC-CC------------------HHHHHHHHHHCC-
Confidence            9999999999999999999998877776521 11  1 24445543 21                  125777888888 


Q ss_pred             EEEEeeecCCcccccEEEEEecCCCCCCHHHHHHHHHHHHHHHHHhH
Q psy14299        391 LMIGYQPLQHRNLHNFFRLVTTCHPASSRQDMDYAIDQIELRGAEVD  437 (448)
Q Consensus       391 ~~~~~~~~~g~~~~~~lRis~~~~~~~t~edid~l~~al~~~~~~~~  437 (448)
                      +.+..+.... ..+.++|||++ ++.++++||++++++|+.+.+.++
T Consensus       336 i~i~~G~~~~-~~~~~~Ri~~~-G~~~~~e~i~~l~~~l~~i~~~L~  380 (382)
T d2bkwa1         336 VVIAGGIHKD-IGPKYIRIGHM-GVTACNKNLPYMKNCFDLIKLALQ  380 (382)
T ss_dssp             EECBCCCCTT-TGGGEEEECCC-GGGTSSTTCTHHHHHHHHHHHHTT
T ss_pred             eEEECCCChh-hcCCEEEEeCC-cCCCCHHHHHHHHHHHHHHHHHHC
Confidence            4444332211 11378999977 577888999999999988877654

>d1m32a_ c.67.1.3 (A:) 2-aminoethylphosphonate transaminase {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: Cystathionine synthase-like
domain: 2-aminoethylphosphonate transaminase
species: Salmonella typhimurium [TaxId: 90371]

Probab=99.91  E-value=1.3e-23  Score=207.29  Aligned_cols=299  Identities=13%  Similarity=0.111  Sum_probs=190.3

Q ss_pred             EEEeCcHHHHHHHHHHHHHHhcCCcccccCCCCCCCeEEEecCCCchHHH-HHHHHhCCCCCcEEEEecCCCCCcCHHHH
Q psy14299          5 PFLLPGGSISNMYSICLARYRLDPDTKRKGLSHLPPLCMFTSEDSHYSML-KAAHWLGIGMDNVIRVKTNERGQMICSFL   83 (448)
Q Consensus         5 g~~t~ggT~an~~al~~a~~~~~~~~~~~G~~~~~~~~Vl~~~~~H~s~~-~~~~~~g~~~~~v~~v~~~~~g~id~e~L   83 (448)
                      .+||.|||+++..++.....+             ++.+++++...+.+.. ..+...+.   ....+....+...+.+..
T Consensus        55 i~~t~s~T~~~~~~~~~l~~~-------------~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~  118 (361)
T d1m32a_          55 VLLQGSGSYAVEAVLGSALGP-------------QDKVLIVSNGAYGARMVEMAGLMGI---AHHAYDCGEVARPDVQAI  118 (361)
T ss_dssp             EEEESCHHHHHHHHHHHSCCT-------------TCCEEEEESSHHHHHHHHHHHHHTC---CEEEEECCTTSCCCHHHH
T ss_pred             EEECCCHHHHHHHHHHHhhhh-------------ccccceeeehhhhhhHHHHhhhhhc---ccccccccccCCccchhh
Confidence            678899999987776544332             3445555555554443 33344455   455555555555444444


Q ss_pred             HHHHHHhhhcCCCcEEEEEeccCCccccccCHHHHHHHHHHcCCEEEEecccccccccccchhhhhcCCCCccEEEECCc
Q psy14299         84 EQTIQTSLAEKKIPLFVNATAGTTVLGAFDPLDEIATVCEKYDLWMHVDACWGGSLIFSEKYSFVLKGINRANSVSWNPH  163 (448)
Q Consensus        84 e~~l~~~~~~~~~~~lVv~~~~~t~tG~~~~l~~I~~ia~~~g~~l~VD~A~~~~~~~~~~~~~~~~~~~~aD~~~~s~h  163 (448)
                      +.....    ..++++|.+++.+|.+|.+.|+++|+++||+||++++||++|+.|..+++...     + .+|++++++|
T Consensus       119 ~~~~~~----~~~~~~v~~~~~~~~tG~~~~i~~i~~~~~~~g~~~~vDa~qs~G~~~~d~~~-----~-~~D~~~~s~~  188 (361)
T d1m32a_         119 DAILNA----DPTISHIAMVHSETTTGMLNPIDEVGALAHRYGKTYIVDAMSSFGGIPMDIAA-----L-HIDYLISSAN  188 (361)
T ss_dssp             HHHHHH----CTTCCEEEEESEETTTTEECCHHHHHHHHHHHTCEEEEECTTTTTTSCCCTTT-----T-TCSEEEEESS
T ss_pred             HHHHHh----ccCccceEEEeeecccccchhhhhhhhhhcccceeeEeecccccCcccccccc-----c-ccceEEeeec
Confidence            333322    24688999999999999999999999999999999999999999998776422     2 5899999999


Q ss_pred             cccCCCCceEEEEEeccchhhhhccCCcccccccCcccccccCCCCCcccCCCCchhHHHHHHHHHhChHHHHHHHHHhh
Q psy14299        164 KMLGAPLQCSILLIKEKGLLHQANATAATYLFQQDKFYDVSFDTGDKSVQCGRKVDAFKLWLMWKARGNLGFRHFVDNAV  243 (448)
Q Consensus       164 K~l~~P~g~G~l~vr~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~g~~~~i~~~~  243 (448)
                      ||+++|.|.|+++++++.. ....+........                       ...   .         .....   
T Consensus       189 K~l~gp~G~g~l~~~~~~~-~~~~~~~~~~~~~-----------------------~~~---~---------~~~~~---  229 (361)
T d1m32a_         189 KCIQGVPGFAFVIAREQKL-AACKGHSRSLSLD-----------------------LYA---Q---------WRCME---  229 (361)
T ss_dssp             STTCCCSSEEEEEEEHHHH-TTCTTCCSCSTTC-----------------------HHH---H---------HHHHH---
T ss_pred             ccccCCCCceEEEechhhh-hhhcccccccccc-----------------------chh---h---------hcccc---
Confidence            9999999999999988643 2211111000000                       000   0         00000   


Q ss_pred             hhccCCCccchhhhhhhhhhhhhhhhhhhhhhhccccccccccCCCCCccccccchhhHHHHHHHHHhcCcc-HHHHHHH
Q psy14299        244 DCSRGSMTFSTLLCFDLQGLLHQANATAATYLFQQDKFYDVSFDTGDKSVQCGRKVDAFKLWLMWKARGNLG-FRHFVDN  322 (448)
Q Consensus       244 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G-~~~~~~~  322 (448)
                                                                 ....+....+.....+++..++.+...+| .+.+.++
T Consensus       230 -------------------------------------------~~~~~~~~t~~~~~~~~~~~~l~~~~~~~~~~~~~~~  266 (361)
T d1m32a_         230 -------------------------------------------DNHGKWRFTSPTHTVLAFAQALKELAKEGGVAARHQR  266 (361)
T ss_dssp             -------------------------------------------HTTTCCSSCCCHHHHHHHHHHHHHHHHHTHHHHHHHH
T ss_pred             -------------------------------------------ccccccCCCCCchhhhHHHHHHHHHHHhcchhhhHHH
Confidence                                                       00011112233445555666666665665 4556677


Q ss_pred             HHHHHHHHHHHhhcCCCeEEeccCC--ce-eeEEEEeeccCCCccccchhhhhhhhhhhHHHHHHHHhCCcEEEEeeecC
Q psy14299        323 AVDCSRYFLSQISQRPGFRLVIPEF--QC-TNICFWFIPVSLRDKVEDETWWSTLSKVAPRIKEKLVLGGTLMIGYQPLQ  399 (448)
Q Consensus       323 ~~~l~~~~~~~L~~~pg~~l~~~~~--~~-~~v~f~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~L~~~g~~~~~~~~~~  399 (448)
                      ...+++.+.+.+... |+.+. .++  ++ .+++|.. |.+..             ....++.+.|.++|++ +..+...
T Consensus       267 ~~~~~~~l~~~~~~~-g~~~~-~~~~~rs~~v~~~~~-p~~~~-------------~~~~~~~~~l~~~gi~-i~~G~~~  329 (361)
T d1m32a_         267 YQQNQRSLVAGMRAL-GFNTL-LDDELHSPIITAFYS-PEDPQ-------------YRFSEFYRRLKEQGFV-IYPGKVS  329 (361)
T ss_dssp             HHHHHHHHHHHHHHT-TCCBS-SCGGGBCSSEEEEEC-CCCTT-------------CCHHHHHHHHHHTTEE-CEECCCS
T ss_pred             HHHHHHHHHHHHhhc-CCccc-CChhhcCCcEEEEEC-CCCCC-------------CCHHHHHHHHHHCCcE-EECCCcC
Confidence            888889999999887 76665 333  23 3444533 33221             0124788999999954 4333222


Q ss_pred             CcccccEEEEEecCCCCCCHHHHHHHHHHHHHHH
Q psy14299        400 HRNLHNFFRLVTTCHPASSRQDMDYAIDQIELRG  433 (448)
Q Consensus       400 g~~~~~~lRis~~~~~~~t~edid~l~~al~~~~  433 (448)
                      .   ++++|||++  .+++++||++|+++|+++.
T Consensus       330 ~---~~~~Ris~~--g~~~~~di~~lv~al~~~L  358 (361)
T d1m32a_         330 Q---SDCFRIGNI--GEVYAADITALLTAIRTAM  358 (361)
T ss_dssp             S---SCEEEEECC--SSCCHHHHHHHHHHHHHHC
T ss_pred             C---CCEEEEeCC--CCCCHHHHHHHHHHHHHHc
Confidence            2   378999985  4789999999999999863

>d1vjoa_ c.67.1.3 (A:) Alanine-glyoxylate aminotransferase {Cyanobacteria (Nostoc sp. pcc 7120) [TaxId: 103690]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: Cystathionine synthase-like
domain: Alanine-glyoxylate aminotransferase
species: Cyanobacteria (Nostoc sp. pcc 7120) [TaxId: 103690]

Probab=99.90  E-value=8.9e-23  Score=202.29  Aligned_cols=300  Identities=12%  Similarity=0.063  Sum_probs=197.4

Q ss_pred             cEEEeCcHHHHHHHHHHHHHHhcCCcccccCCCCCCCeEEEecCCCchHHHHHH--HHhCCCCCcEEEEecCCCCCcCHH
Q psy14299          4 KPFLLPGGSISNMYSICLARYRLDPDTKRKGLSHLPPLCMFTSEDSHYSMLKAA--HWLGIGMDNVIRVKTNERGQMICS   81 (448)
Q Consensus         4 ~g~~t~ggT~an~~al~~a~~~~~~~~~~~G~~~~~~~~Vl~~~~~H~s~~~~~--~~~g~~~~~v~~v~~~~~g~id~e   81 (448)
                      ..+|+.|||+++..++.....              ++..+++....|.+.....  ...+.   ....+..+.+...+.+
T Consensus        71 ~i~~~g~gT~~~~~~~~~~~~--------------~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~  133 (377)
T d1vjoa_          71 TIAVSGTGTAAMEATIANAVE--------------PGDVVLIGVAGYFGNRLVDMAGRYGA---DVRTISKPWGEVFSLE  133 (377)
T ss_dssp             EEEESSCHHHHHHHHHHHHCC--------------TTCEEEEEESSHHHHHHHHHHHHTTC---EEEEEECCTTCCCCHH
T ss_pred             EEEEcCcHHHHHHHHHHhccc--------------cccccceeeechhhhhhhhhhhhhcc---cccccccCCCCcccch
Confidence            567788899998877765443              3445666667777654333  33334   4556666666667777


Q ss_pred             HHHHHHHHhhhcCCCcEEEEEeccCCccccccCHHHHHHHHHHcCCEEEEecccccccccccchhhhhcCCCCccEEEEC
Q psy14299         82 FLEQTIQTSLAEKKIPLFVNATAGTTVLGAFDPLDEIATVCEKYDLWMHVDACWGGSLIFSEKYSFVLKGINRANSVSWN  161 (448)
Q Consensus        82 ~Le~~l~~~~~~~~~~~lVv~~~~~t~tG~~~~l~~I~~ia~~~g~~l~VD~A~~~~~~~~~~~~~~~~~~~~aD~~~~s  161 (448)
                      ..+....+.     .+++|++++.+|.+|.+.|+++|+++||++|+.++||++++.+..+.+..     .+ .+|+++++
T Consensus       134 ~~~~~~~~~-----~~~~v~~~~~~~~tg~~~~i~~i~~~~~~~g~~~~vDa~~~~g~~~~~~~-----~~-~~d~~~~s  202 (377)
T d1vjoa_         134 ELRTALETH-----RPAILALVHAETSTGARQPLEGVGELCREFGTLLLVDTVTSLGGVPIFLD-----AW-GVDLAYSC  202 (377)
T ss_dssp             HHHHHHHHH-----CCSEEEEESEETTTTEECCCTTHHHHHHHHTCEEEEECTTTTTTSCCCTT-----TT-TCSEEECC
T ss_pred             hhhhhhhcC-----cceeeeeeeeeccceeeechhhhhhhhhhccceEEEecchhhhhhhhccc-----cc-ccceeeec
Confidence            777666552     57899999999999999999999999999999999999999988765532     22 47999999


Q ss_pred             CccccCCCCceEEEEEeccchhhhhccCCcccccc-cCcccccccCCCCCcccCCCCchhHHHHHHHHHhChHHHHHHHH
Q psy14299        162 PHKMLGAPLQCSILLIKEKGLLHQANATAATYLFQ-QDKFYDVSFDTGDKSVQCGRKVDAFKLWLMWKARGNLGFRHFVD  240 (448)
Q Consensus       162 ~hK~l~~P~g~G~l~vr~~~~~~~~~~~~~~y~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~g~~~~i~  240 (448)
                      .|||+++|+|+|+++++++. +........++... ............                                
T Consensus       203 ~~K~~~gp~g~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~--------------------------------  249 (377)
T d1vjoa_         203 SQKGLGCSPGASPFTMSSRA-IEKLQRRRTKVANWYLDMNLLGKYWGS--------------------------------  249 (377)
T ss_dssp             SSSTTCSCSSCEEEEECHHH-HHHHHTCSSCCSCSTTCHHHHHHHHST--------------------------------
T ss_pred             ccccccCCCEEEEecchhhH-HhhhhccCCCCcceeeccchhhhccCc--------------------------------
Confidence            99999999999999987753 33322211111100 000000000000                                


Q ss_pred             HhhhhccCCCccchhhhhhhhhhhhhhhhhhhhhhhccccccccccCCCCCccccccchhhHHHHHHHHHhcCccHHHHH
Q psy14299        241 NAVDCSRGSMTFSTLLCFDLQGLLHQANATAATYLFQQDKFYDVSFDTGDKSVQCGRKVDAFKLWLMWKARGNLGFRHFV  320 (448)
Q Consensus       241 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~  320 (448)
                                                                      ...............+..++.....+|.+.+.
T Consensus       250 ------------------------------------------------~~~~~~~~~~~~~~~l~~~~~~~~~~g~~~~~  281 (377)
T d1vjoa_         250 ------------------------------------------------ERVYHHTAPINLYYALREALRLIAQEGLANCW  281 (377)
T ss_dssp             ------------------------------------------------TCCCCSCCCHHHHHHHHHHHHHHHHHCHHHHH
T ss_pred             ------------------------------------------------ccccccccceechhhhHHHHhhhhhcCchHHH
Confidence                                                            00000011122334445566677788999999


Q ss_pred             HHHHHHHHHHHHHhhcCCCeEEeccCC--ce-eeEEEEeeccCCCccccchhhhhhhhhhhHHHHHHHHhC-CcEEEEee
Q psy14299        321 DNAVDCSRYFLSQISQRPGFRLVIPEF--QC-TNICFWFIPVSLRDKVEDETWWSTLSKVAPRIKEKLVLG-GTLMIGYQ  396 (448)
Q Consensus       321 ~~~~~l~~~~~~~L~~~pg~~l~~~~~--~~-~~v~f~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~L~~~-g~~~~~~~  396 (448)
                      ++..++++++++.+... ++.++ .++  ++ ++++|.+ |.++.               ..++.+.|.++ | +.+..+
T Consensus       282 ~~~~~~~~~l~~~l~~~-~~~~~-~~~~~rs~~v~~~~~-p~~~~---------------~~~l~~~L~~~~g-I~v~~G  342 (377)
T d1vjoa_         282 QRHQKNVEYLWERLEDI-GLSLH-VEKEYRLPTLTTVCI-PDGVD---------------GKAVARRLLNEHN-IEVGGG  342 (377)
T ss_dssp             HHHHHHHHHHHHHHHHT-TCCBS-SCGGGBCSSEEEEEC-CTTCC---------------HHHHHHHHHHHHC-EECEEC
T ss_pred             HHHHHHhhhhhhhhhcc-Cceee-cChHhcCCeEEEEEC-CCCCC---------------HHHHHHHHHhcCC-EEEecC
Confidence            99999999999999987 77765 333  23 4555543 44443               23778888665 6 544332


Q ss_pred             ecCCcccccEEEEEecCCCCCCHHHHHHHHHHHHHHHH
Q psy14299        397 PLQHRNLHNFFRLVTTCHPASSRQDMDYAIDQIELRGA  434 (448)
Q Consensus       397 ~~~g~~~~~~lRis~~~~~~~t~edid~l~~al~~~~~  434 (448)
                      ..  ...++.+|+|++ ++++|+||||+|+++|+++.+
T Consensus       343 ~~--~~~~~~~Ris~~-g~~~t~edi~~lv~al~~~l~  377 (377)
T d1vjoa_         343 LG--ELAGKVWRVGLM-GFNSRKESVDQLIPALEQVLR  377 (377)
T ss_dssp             CG--GGTTTEEEEECC-GGGCSHHHHHHHHHHHHHHHC
T ss_pred             cc--cccCCEEEEecC-cCCCCHHHHHHHHHHHHHHhC
Confidence            11  111368999976 588999999999999998863

>d1c4ka2 c.67.1.5 (A:108-569) Ornithine decarboxylase major domain {Lactobacillus sp., strain 30a [TaxId: 1591]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: Ornithine decarboxylase major domain
domain: Ornithine decarboxylase major domain
species: Lactobacillus sp., strain 30a [TaxId: 1591]

Probab=99.90  E-value=9.3e-23  Score=208.72  Aligned_cols=164  Identities=16%  Similarity=0.105  Sum_probs=118.9

Q ss_pred             EEEeCcHHHHHHHHHHHHHHhcCCcccccCCCCCCCeEEEecCCCchHHHHHHHHhCCCCCcEEEEecCCCC--------
Q psy14299          5 PFLLPGGSISNMYSICLARYRLDPDTKRKGLSHLPPLCMFTSEDSHYSMLKAAHWLGIGMDNVIRVKTNERG--------   76 (448)
Q Consensus         5 g~~t~ggT~an~~al~~a~~~~~~~~~~~G~~~~~~~~Vl~~~~~H~s~~~~~~~~g~~~~~v~~v~~~~~g--------   76 (448)
                      .+|+++||+++++++..+.-+             +++.|++++.+|.|+.+++..++.....+..++.++.+        
T Consensus        84 a~f~~~Gtt~~n~a~i~a~~~-------------~gd~Vi~~~~~H~Sv~~~~~~l~~~~~~~~~~~~~~~g~~~~~~~~  150 (462)
T d1c4ka2          84 TYFVLGGSSNANNTVTSALVS-------------NGDLVLFDRNNHKSVYNSALAMAGGRPVYLQTNRNPYGFIGGIYDS  150 (462)
T ss_dssp             EEEESSHHHHHHHHHHHHHCC-------------TTCEEEEETTCCHHHHHHHTTTTCCEEEEECEEECTTCCEEEECGG
T ss_pred             EEEECCchHHHHHHHHHHhcC-------------CCCeEEecccchHHHHHHHHHHhcCCceeeecccccccccCCCChH
Confidence            688888888766665554442             78899999999999999887665432235555666554        


Q ss_pred             CcCHHHHHHHHHH---hhhcCCCcEEEEEeccCCccccccCHHHHHHHHHHcCCEEEEecccccccccccchhhhhcCC-
Q psy14299         77 QMICSFLEQTIQT---SLAEKKIPLFVNATAGTTVLGAFDPLDEIATVCEKYDLWMHVDACWGGSLIFSEKYSFVLKGI-  152 (448)
Q Consensus        77 ~id~e~Le~~l~~---~~~~~~~~~lVv~~~~~t~tG~~~~l~~I~~ia~~~g~~l~VD~A~~~~~~~~~~~~~~~~~~-  152 (448)
                      .++.+.+++.+.+   ......+++.+++.+.+|..|.+.|+++|+++||+||+++|||+||+++..+.+..+...... 
T Consensus       151 ~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~~~~~~~G~~~dl~~I~~ia~~~g~~l~vD~A~~~~~~~~~~~~~~~~~~g  230 (462)
T d1c4ka2         151 DFDEKKIRELAAKVDPERAKWKRPFRLAVIQLGTYDGTIYNAHEVVKRIGHLCDYIEFDSAWVGYEQFIPMMRNSSPLLI  230 (462)
T ss_dssp             GSCHHHHHHHTTTSSHHHHTCSCCBSEEEEESBCTTSEEECHHHHHHHHGGGBSEEEEECTTCCGGGSSGGGGGGCTTSC
T ss_pred             HhhHHHHHhhhhhhcHHhhhccCCceeEEEEeeeeccchhhHHHHHHHHHHcCCEEEEechhhccccccCcCCcchhhcc
Confidence            2333444333321   112234567778888888899999999999999999999999999999988776544332111 


Q ss_pred             ------CCccEEEECCccccCCCCceEEEEEeccc
Q psy14299        153 ------NRANSVSWNPHKMLGAPLQCSILLIKEKG  181 (448)
Q Consensus       153 ------~~aD~~~~s~hK~l~~P~g~G~l~vr~~~  181 (448)
                            ..+|++++|+||++++|.|++++..++..
T Consensus       231 ~~~~~~~~~D~~~~S~HK~lg~~~~g~ll~~~~~~  265 (462)
T d1c4ka2         231 DDLGPEDPGIIVVQSVHKQQAGFSQTSQIHKKDSH  265 (462)
T ss_dssp             CCCCTTSCEEEEEECHHHHSSCCTTCEEEEEECGG
T ss_pred             ccccccCCccEEEEecCcccccccceEEEEecccc
Confidence                  13699999999999999998888887653

>d1fc4a_ c.67.1.4 (A:) 2-amino-3-ketobutyrate CoA ligase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: GABA-aminotransferase-like
domain: 2-amino-3-ketobutyrate CoA ligase
species: Escherichia coli [TaxId: 562]

Probab=99.90  E-value=3.1e-22  Score=201.34  Aligned_cols=286  Identities=14%  Similarity=0.106  Sum_probs=205.3

Q ss_pred             cEEEeCcHHHHHHHHHHHHHHhcCCcccccCCCCCCCeEEEecCCCchHHHHHHHHhCCCCCcEEEEecCCCCCcCHHHH
Q psy14299          4 KPFLLPGGSISNMYSICLARYRLDPDTKRKGLSHLPPLCMFTSEDSHYSMLKAAHWLGIGMDNVIRVKTNERGQMICSFL   83 (448)
Q Consensus         4 ~g~~t~ggT~an~~al~~a~~~~~~~~~~~G~~~~~~~~Vl~~~~~H~s~~~~~~~~g~~~~~v~~v~~~~~g~id~e~L   83 (448)
                      .++++++|+++|+.++.+...              +++.|+++...|.|+..++...+.   ++..+++.     |++++
T Consensus       107 ~al~~~SG~~An~~~i~~l~~--------------~~d~i~~d~~~h~s~~~G~~~~~a---~~~~~~~~-----d~~~l  164 (401)
T d1fc4a_         107 DAILYSSCFDANGGLFETLLG--------------AEDAIISDALNHASIIDGVRLCKA---KRYRYANN-----DMQEL  164 (401)
T ss_dssp             EEEEESCHHHHHHTTHHHHCC--------------TTCEEEEETTCCHHHHHHHHTSCS---EEEEECTT-----CHHHH
T ss_pred             ceEEecchhhhhHHHHHHhcC--------------CCcEEEeCCcchHHHHccccccCc---eEEEEcCC-----ChHHH
Confidence            478999999999998876544              567899999999999999998777   67777765     89999


Q ss_pred             HHHHHHhhhcCCCcEEEEEeccCCccccccCHHHHHHHHHHcCCEEEEecccccccccccch--hhhhcCCCCccEEEEC
Q psy14299         84 EQTIQTSLAEKKIPLFVNATAGTTVLGAFDPLDEIATVCEKYDLWMHVDACWGGSLIFSEKY--SFVLKGINRANSVSWN  161 (448)
Q Consensus        84 e~~l~~~~~~~~~~~lVv~~~~~t~tG~~~~l~~I~~ia~~~g~~l~VD~A~~~~~~~~~~~--~~~~~~~~~aD~~~~s  161 (448)
                      ++.+++..+.+....+|++....++.|.+.||++|.++|++||++++||+||+++.+-....  .........+|+++.+
T Consensus       165 e~~~~~~~~~~~~~~liv~egv~s~~G~~~~L~~l~~L~~~~~a~LivDeah~~g~~g~~G~G~~~~~~~~~~~dii~~t  244 (401)
T d1fc4a_         165 EARLKEAREAGARHVLIATDGVFSMDGVIANLKGVCDLADKYDALVMVDDSHAVGFVGENGRGSHEYCDVMGRVDIITGT  244 (401)
T ss_dssp             HHHHHHHHHTTCSSEEEEEESEETTTTEECCHHHHHHHHHHTTEEEEEECTTTTTTSSTTSCCHHHHTTCTTCCSEEEEE
T ss_pred             HHHHHHhhhcccCceEEEEcCCCCCCCchhhhhHHHHHHhhcCcEEEehhhhccccccCCCCccchhccCCCCCeEEEee
Confidence            99988766666677889999999999999999999999999999999999999987632211  1111122358999999


Q ss_pred             CccccCCCCceEEEEEeccchhhhhccCCcccccccCcccccccCCCCCcccCCCCchhHHHHHHHHHhChHHHHHHHHH
Q psy14299        162 PHKMLGAPLQCSILLIKEKGLLHQANATAATYLFQQDKFYDVSFDTGDKSVQCGRKVDAFKLWLMWKARGNLGFRHFVDN  241 (448)
Q Consensus       162 ~hK~l~~P~g~G~l~vr~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~g~~~~i~~  241 (448)
                      ..|.++++.  |.++..++++........++|+++...                   .+....                 
T Consensus       245 l~Ka~gg~~--Gg~v~g~~~~~~~l~~~~~~~~~s~~l-------------------~p~~~~-----------------  286 (401)
T d1fc4a_         245 LGKALGGAS--GGYTAARKEVVEWLRQRSRPYLFSNSL-------------------APAIVA-----------------  286 (401)
T ss_dssp             SSSTTCSSS--CEEEEECHHHHHHHHHHCHHHHHSCCC-------------------CHHHHH-----------------
T ss_pred             cccccccCC--cccccCCHHHHHHHHcCChhhhhcCCC-------------------CHHHHH-----------------
Confidence            999997654  333455555555444444555543220                   000000                 


Q ss_pred             hhhhccCCCccchhhhhhhhhhhhhhhhhhhhhhhccccccccccCCCCCccccccchhhHHHHHHHHHhcCccHHHHHH
Q psy14299        242 AVDCSRGSMTFSTLLCFDLQGLLHQANATAATYLFQQDKFYDVSFDTGDKSVQCGRKVDAFKLWLMWKARGNLGFRHFVD  321 (448)
Q Consensus       242 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~  321 (448)
                                                                                   +...+++...  ..+++++
T Consensus       287 -------------------------------------------------------------aa~~~l~~~~--~~~~~~~  303 (401)
T d1fc4a_         287 -------------------------------------------------------------ASIKVLEMVE--AGSELRD  303 (401)
T ss_dssp             -------------------------------------------------------------HHHHHHHHHH--TCHHHHH
T ss_pred             -------------------------------------------------------------HHHhhhcccc--cCHHHHH
Confidence                                                                         0111111111  1256678


Q ss_pred             HHHHHHHHHHHHhhcCCCeEEeccCCceeeEEEEeeccCCCccccchhhhhhhhhhhHHHHHHHHhCCcEEEEe----ee
Q psy14299        322 NAVDCSRYFLSQISQRPGFRLVIPEFQCTNICFWFIPVSLRDKVEDETWWSTLSKVAPRIKEKLVLGGTLMIGY----QP  397 (448)
Q Consensus       322 ~~~~l~~~~~~~L~~~pg~~l~~~~~~~~~v~f~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~L~~~g~~~~~~----~~  397 (448)
                      +..++.+++++.+... |+.+.  ...++++.+.+..                +....++.+.|.++| +++.+    ++
T Consensus       304 ~l~~~~~~~~~~l~~~-g~~~~--~~~~pIv~v~~~~----------------~~~a~~~~~~L~~~G-i~v~~i~~PtV  363 (401)
T d1fc4a_         304 RLWANARQFREQMSAA-GFTLA--GADHAIIPVMLGD----------------AVVAQKFARELQKEG-IYVTGFFYPVV  363 (401)
T ss_dssp             HHHHHHHHHHHHHHHT-TCCBC--CSSSSEEEEEEEC----------------HHHHHHHHHHHHHTT-EECCEECTTSS
T ss_pred             HHHHHHHHHHhhhccc-CCccC--CCCCCEEEEEECC----------------HHHHHHHHHHHHHCC-ceEEeECCCCC
Confidence            8899999999999997 77764  4556777664421                112347889999999 44443    33


Q ss_pred             cCCcccccEEEEEecCCCCCCHHHHHHHHHHHHHHHHHhH
Q psy14299        398 LQHRNLHNFFRLVTTCHPASSRQDMDYAIDQIELRGAEVD  437 (448)
Q Consensus       398 ~~g~~~~~~lRis~~~~~~~t~edid~l~~al~~~~~~~~  437 (448)
                      +.+.   ..+|+++  +..+|+||||+++++|+++.++++
T Consensus       364 p~g~---~~lRi~~--~a~hT~edId~~v~al~ev~~~lg  398 (401)
T d1fc4a_         364 PKGQ---ARIRTQM--SAAHTPEQITRAVEAFTRIGKQLG  398 (401)
T ss_dssp             CTTC---EEEEEEC--CTTCCHHHHHHHHHHHHHHHHHTT
T ss_pred             CCCC---ceEEEEE--CCCCCHHHHHHHHHHHHHHHHHhC
Confidence            4555   7899999  789999999999999999998875

>d2bwna1 c.67.1.4 (A:2-397) 5-aminolevulinate synthase {Rhodobacter capsulatus [TaxId: 1061]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: GABA-aminotransferase-like
domain: 5-aminolevulinate synthase
species: Rhodobacter capsulatus [TaxId: 1061]

Probab=99.89  E-value=5.4e-22  Score=198.48  Aligned_cols=283  Identities=11%  Similarity=0.110  Sum_probs=201.5

Q ss_pred             cEEEeCcHHHHHHHHHHHHHHhcCCcccccCCCCCCCeEEEecCCCchHHHHHHHHhCCCCCcEEEEecCCCCCcCHHHH
Q psy14299          4 KPFLLPGGSISNMYSICLARYRLDPDTKRKGLSHLPPLCMFTSEDSHYSMLKAAHWLGIGMDNVIRVKTNERGQMICSFL   83 (448)
Q Consensus         4 ~g~~t~ggT~an~~al~~a~~~~~~~~~~~G~~~~~~~~Vl~~~~~H~s~~~~~~~~g~~~~~v~~v~~~~~g~id~e~L   83 (448)
                      ..++.++|.++|+.++.+....            .++++|+.+...|.|+.+++++.+.   +++.++++     |++++
T Consensus       107 ~all~~sG~~An~~~i~~l~~~------------~~~d~i~~D~~~Hasi~~g~~ls~a---~~~~f~Hn-----d~~~l  166 (396)
T d2bwna1         107 AALVFSSAYNANDATLSTLRVL------------FPGLIIYSDSLNHASMIEGIKRNAG---PKRIFRHN-----DVAHL  166 (396)
T ss_dssp             EEEEESCHHHHHHHHHHHHHHH------------STTCEEEEETTCCHHHHHHHHHSCC---CEEEECTT-----CHHHH
T ss_pred             ceeeeecchHHHHHHHHHHhcc------------cCCCceeehhhhhhccchhhhcccc---CceEeecc-----hHHHh
Confidence            4688999999999888765432            2678899999999999999999988   78888887     89999


Q ss_pred             HHHHHHhhhcCCCcEEEEEeccCCccccccCHHHHHHHHHHcCCEEEEecccccccccccchh--hhhcCCCCccEEEEC
Q psy14299         84 EQTIQTSLAEKKIPLFVNATAGTTVLGAFDPLDEIATVCEKYDLWMHVDACWGGSLIFSEKYS--FVLKGINRANSVSWN  161 (448)
Q Consensus        84 e~~l~~~~~~~~~~~lVv~~~~~t~tG~~~~l~~I~~ia~~~g~~l~VD~A~~~~~~~~~~~~--~~~~~~~~aD~~~~s  161 (448)
                      ++.+++.  ...++++|++....+++|.+.|+++|.++|++||++++||.||+.|.+--....  ....-...+|+++.+
T Consensus       167 ~~l~~~~--~~~~~~~iv~egvySmdGd~apl~~l~~L~~~y~~~L~vDeAHs~Gv~G~~G~G~~~~~~~~~~~di~~gT  244 (396)
T d2bwna1         167 RELIAAD--DPAAPKLIAFESVYSMDGDFGPIKEICDIAEEFGALTYIDEVHAVGMYGPRGAGVAERDGLMHRIDIFNGT  244 (396)
T ss_dssp             HHHHHHS--CTTSCEEEEEESBCTTTCCBCCHHHHHHHHHHHTCEEEEECTTTTTTSSTTSCCHHHHHTCGGGCSEEEEE
T ss_pred             hhHHhhh--cccCceeEEEEeeccCcccccccHhHHHHhhhhcceeeeccceeeeeeccccccchhhcCCceeeeeeeec
Confidence            9888753  234577999999999999999999999999999999999999999987322111  001111247999999


Q ss_pred             CccccCCCCceEEEEEeccchhhhhccCCcccccccCcccccccCCCCCcccCCCCchhHHHHHHHHHhChHHHHHHHHH
Q psy14299        162 PHKMLGAPLQCSILLIKEKGLLHQANATAATYLFQQDKFYDVSFDTGDKSVQCGRKVDAFKLWLMWKARGNLGFRHFVDN  241 (448)
Q Consensus       162 ~hK~l~~P~g~G~l~vr~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~g~~~~i~~  241 (448)
                      +.|.+++.   |.+++.++...........+|+++...+                   +                     
T Consensus       245 lsKa~g~~---Gg~v~~~~~~i~~l~~~~~~~ifStalp-------------------p---------------------  281 (396)
T d2bwna1         245 LAKAYGVF---GGYIAASARMVDAVRSYAPGFIFSTSLP-------------------P---------------------  281 (396)
T ss_dssp             SSSTTCSC---CEEEEECHHHHHHHHHHCHHHHTSBCCC-------------------H---------------------
T ss_pred             cccccccc---ccccchhHHHHHHHHhhcchhhhcccCc-------------------H---------------------
Confidence            99999865   3344556666666555566676654311                   0                     


Q ss_pred             hhhhccCCCccchhhhhhhhhhhhhhhhhhhhhhhccccccccccCCCCCccccccchhhHHHHHHHHHhcCccHHHHHH
Q psy14299        242 AVDCSRGSMTFSTLLCFDLQGLLHQANATAATYLFQQDKFYDVSFDTGDKSVQCGRKVDAFKLWLMWKARGNLGFRHFVD  321 (448)
Q Consensus       242 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~  321 (448)
                                                                               +.+.++..+++....+-.++.+.
T Consensus       282 ---------------------------------------------------------~~~aa~~~al~i~~~~~~~~~r~  304 (396)
T d2bwna1         282 ---------------------------------------------------------AIAAGAQASIAFLKTAEGQKLRD  304 (396)
T ss_dssp             ---------------------------------------------------------HHHHHHHHHHHHHTSHHHHHHHH
T ss_pred             ---------------------------------------------------------HHHHHHHHHHHHhhcchHHHHHH
Confidence                                                                     00011111222222223344566


Q ss_pred             HHHHHHHHHHHHhhcCCCeEEeccCCceeeEEEEeeccCCCccccchhhhhhhhhhhHHHHHHHH-hCCcEEEE----ee
Q psy14299        322 NAVDCSRYFLSQISQRPGFRLVIPEFQCTNICFWFIPVSLRDKVEDETWWSTLSKVAPRIKEKLV-LGGTLMIG----YQ  396 (448)
Q Consensus       322 ~~~~l~~~~~~~L~~~pg~~l~~~~~~~~~v~f~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~L~-~~g~~~~~----~~  396 (448)
                      +...+.+++++.+.+. |+.+.  +..++++.+.+..                +..+.++.+.|+ ++| +++.    |+
T Consensus       305 ~l~~~~~~~~~~l~~~-g~~~~--~~~spIvpv~ig~----------------~~~~~~~a~~lL~e~G-i~v~~i~~Pt  364 (396)
T d2bwna1         305 AQQMHAKVLKMRLKAL-GMPII--DHGSHIVPVVIGD----------------PVHTKAVSDMLLSDYG-VYVQPINFPT  364 (396)
T ss_dssp             HHHHHHHHHHHHHHHH-TCCBC--CCSSSCEEEECCC----------------HHHHHHHHHHHHHHHC-EECCEECTTT
T ss_pred             HHHHHHHHHHHHHHhc-CCCcC--CCCCCEEEEEeCC----------------HHHHHHHHHHHHHhCC-EEEEEECCCc
Confidence            6778899999999987 88774  4567888875421                012346777766 568 5444    33


Q ss_pred             ecCCcccccEEEEEecCCCCCCHHHHHHHHHHHHHHH
Q psy14299        397 PLQHRNLHNFFRLVTTCHPASSRQDMDYAIDQIELRG  433 (448)
Q Consensus       397 ~~~g~~~~~~lRis~~~~~~~t~edid~l~~al~~~~  433 (448)
                      ++.|.   ..+|+++  |..+|+||||+|+++|++++
T Consensus       365 Vp~g~---~rlRi~l--sa~ht~edId~l~~~L~~iw  396 (396)
T d2bwna1         365 VPRGT---ERLRFTP--SPVHDLKQIDGLVHAMDLLW  396 (396)
T ss_dssp             SCTTC---CEEEECC--CTTSCHHHHHHHHHHHHHHC
T ss_pred             CCCCC---eeEEEEe--CccCCHHHHHHHHHHHHHhC
Confidence            44555   7899999  78999999999999999863

>d2ch1a1 c.67.1.3 (A:2-389) 3-hydroxykynurenine transaminase {Malaria mosquito (Anopheles gambiae) [TaxId: 7165]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: Cystathionine synthase-like
domain: 3-hydroxykynurenine transaminase
species: Malaria mosquito (Anopheles gambiae) [TaxId: 7165]

Probab=99.89  E-value=2.7e-22  Score=199.86  Aligned_cols=306  Identities=12%  Similarity=0.110  Sum_probs=201.0

Q ss_pred             EEEeCcHHHHHHHHHHHHHHhcCCcccccCCCCCCCeEEEecCCCchHHHHH--HHHhCCCCCcEEEEecCCCCCcCHHH
Q psy14299          5 PFLLPGGSISNMYSICLARYRLDPDTKRKGLSHLPPLCMFTSEDSHYSMLKA--AHWLGIGMDNVIRVKTNERGQMICSF   82 (448)
Q Consensus         5 g~~t~ggT~an~~al~~a~~~~~~~~~~~G~~~~~~~~Vl~~~~~H~s~~~~--~~~~g~~~~~v~~v~~~~~g~id~e~   82 (448)
                      .+|+.|||.++..++..+..              +++.+++....|++....  +...+.   ....++.++....+.+.
T Consensus        71 i~~~gsgT~a~ea~~~~l~~--------------~~~~vl~~~~g~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~  133 (388)
T d2ch1a1          71 MCVSGSAHAGMEAMLSNLLE--------------EGDRVLIAVNGIWAERAVEMSERYGA---DVRTIEGPPDRPFSLET  133 (388)
T ss_dssp             EEESSCHHHHHHHHHHHHCC--------------TTCEEEEEESSHHHHHHHHHHHHTTC---EEEEEECCTTSCCCHHH
T ss_pred             EEEcCcHHHHHHHHHHHhcc--------------ccccccccccccccccchhhhhhhcc---cccccccccccccchhh
Confidence            45566788887777665543              344566666788775433  444455   57778887788888888


Q ss_pred             HHHHHHHhhhcCCCcEEEEEeccCCccccccCHHHHHHHHHHcCCEEEEecccccccccccchhhhhcCCCCccEEEECC
Q psy14299         83 LEQTIQTSLAEKKIPLFVNATAGTTVLGAFDPLDEIATVCEKYDLWMHVDACWGGSLIFSEKYSFVLKGINRANSVSWNP  162 (448)
Q Consensus        83 Le~~l~~~~~~~~~~~lVv~~~~~t~tG~~~~l~~I~~ia~~~g~~l~VD~A~~~~~~~~~~~~~~~~~~~~aD~~~~s~  162 (448)
                      ++..+...     +++++++++.+|.+|...|+++|+++||++|++++||++++.+..+++...     + .+|+++++.
T Consensus       134 ~~~~~~~~-----~~~~v~~~~~~t~tG~~~~~~~i~~~~~~~~~~~~vD~~ss~g~~pid~~~-----~-~~d~~~~s~  202 (388)
T d2ch1a1         134 LARAIELH-----QPKCLFLTHGDSSSGLLQPLEGVGQICHQHDCLLIVDAVASLCGVPFYMDK-----W-EIDAVYTGA  202 (388)
T ss_dssp             HHHHHHHH-----CCSEEEEESEETTTTEECCCTTHHHHHHHTTCEEEEECTTTBTTBCCCTTT-----T-TCCEEECCC
T ss_pred             hhhhhccC-----Ccceeeeeecccccccccchhhhcchhccccceeeeeeeecccccccchhc-----c-CceEEEEcc
Confidence            88887652     578999999999999999999999999999999999999999988776432     2 489999999


Q ss_pred             ccccCCCCceEEEEEeccchhhhhccCCcccccccCcccccccCCCCCcccCCCCchhHHHHHHHHHhChHHHHHHHHHh
Q psy14299        163 HKMLGAPLQCSILLIKEKGLLHQANATAATYLFQQDKFYDVSFDTGDKSVQCGRKVDAFKLWLMWKARGNLGFRHFVDNA  242 (448)
Q Consensus       163 hK~l~~P~g~G~l~vr~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~g~~~~i~~~  242 (448)
                      |||+++|+|+|+++++++.+ ........+......   ...                   + ....             
T Consensus       203 ~K~~~gp~G~g~~~~~~~~~-~~~~~~~~~~~~~~~---~~~-------------------~-~~~~-------------  245 (388)
T d2ch1a1         203 QKVLGAPPGITPISISPKAL-DVIRNRRTKSKVFYW---DLL-------------------L-LGNY-------------  245 (388)
T ss_dssp             C-CCCCCSSCEEEEECHHHH-HHHHTCSSCCSCGGG---CHH-------------------H-HHHH-------------
T ss_pred             ccccCCCCeEEEEeccHHHH-HhhhcccCccccccc---cch-------------------h-hhhh-------------
Confidence            99999999999999977643 322211111100000   000                   0 0000             


Q ss_pred             hhhccCCCccchhhhhhhhhhhhhhhhhhhhhhhccccccccccCCCCCccccccchhhHHHHHHHHHhcCccHHHHHHH
Q psy14299        243 VDCSRGSMTFSTLLCFDLQGLLHQANATAATYLFQQDKFYDVSFDTGDKSVQCGRKVDAFKLWLMWKARGNLGFRHFVDN  322 (448)
Q Consensus       243 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~  322 (448)
                                                             +. .....+....-.....+.++..+++++..+|.+....+
T Consensus       246 ---------------------------------------~~-~~~~~~~~~~t~~~~~i~~~~~~l~~~~~~~~~~~~~~  285 (388)
T d2ch1a1         246 ---------------------------------------WG-CYDEPKRYHHTVASNLIFALREALAQIAEEGLENQIKR  285 (388)
T ss_dssp             ---------------------------------------TT-CSSSCCCCCCCCCHHHHHHHHHHHHHHHHHCHHHHHHH
T ss_pred             ---------------------------------------hc-ccccccccCccchHHHHHHHHHHHHHHHHhhhHHHHHH
Confidence                                                   00 00000001111223445556667777888899999888


Q ss_pred             HHHHHHHHHHHhhcCCCeEEeccCC--ce-eeEEEEeeccCCCccccchhhhhhhhhhhHHHHHHHHhC-CcEEEEeeec
Q psy14299        323 AVDCSRYFLSQISQRPGFRLVIPEF--QC-TNICFWFIPVSLRDKVEDETWWSTLSKVAPRIKEKLVLG-GTLMIGYQPL  398 (448)
Q Consensus       323 ~~~l~~~~~~~L~~~pg~~l~~~~~--~~-~~v~f~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~L~~~-g~~~~~~~~~  398 (448)
                      ...+..+.+..+... ++..+..++  ++ ++++|.+ |++++               ..++...|.++ | +.+..+..
T Consensus       286 ~~~~~~~~~~~~~~~-~~~~~~~~~~~rs~~v~~~~~-p~g~~---------------~~~l~~~l~~~~g-I~v~~G~~  347 (388)
T d2ch1a1         286 RIECAQILYEGLGKM-GLDIFVKDPRHRLPTVTGIMI-PKGVD---------------WWKVSQYAMNNFS-LEVQGGLG  347 (388)
T ss_dssp             HHHHHHHHHHHHHHH-TCCBSSCSGGGBCTTEEEEEC-CTTCC---------------HHHHHHHHHHHHC-BCCBCCCG
T ss_pred             HHHHHHHHHhhhhhc-ccccccCCHHHhCCeEEEEEC-CCCCC---------------HHHHHHHHhhcCC-EEEeCCCc
Confidence            888888888888776 444331222  23 3556654 44443               13677788665 6 44443321


Q ss_pred             CCcccccEEEEEecCCCCCCHHHHHHHHHHHHHHHHHh
Q psy14299        399 QHRNLHNFFRLVTTCHPASSRQDMDYAIDQIELRGAEV  436 (448)
Q Consensus       399 ~g~~~~~~lRis~~~~~~~t~edid~l~~al~~~~~~~  436 (448)
                        ...++.||||++ ++++|+|||++++++|+++.+..
T Consensus       348 --~~~~~~~RIs~~-g~~~t~edI~~ll~alke~L~~~  382 (388)
T d2ch1a1         348 --PTFGKAWRVGIM-GECSTVQKIQFYLYGFKESLKAT  382 (388)
T ss_dssp             --GGTTTEEEEECC-GGGCSHHHHHHHHHHHHHHHHHH
T ss_pred             --cccCCEEEEcCC-cCCCCHHHHHHHHHHHHHHHHhh
Confidence              111368999976 57899999999999999998864

>d1bs0a_ c.67.1.4 (A:) PLP-dependent acyl-CoA synthase (8-amino-7-oxonanoate synthase, AONS) {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: GABA-aminotransferase-like
domain: PLP-dependent acyl-CoA synthase (8-amino-7-oxonanoate synthase, AONS)
species: Escherichia coli [TaxId: 562]

Probab=99.88  E-value=1.7e-21  Score=194.78  Aligned_cols=278  Identities=16%  Similarity=0.097  Sum_probs=199.5

Q ss_pred             cEEEeCcHHHHHHHHHHHHHHhcCCcccccCCCCCCCeEEEecCCCchHHHHHHHHhCCCCCcEEEEecCCCCCcCHHHH
Q psy14299          4 KPFLLPGGSISNMYSICLARYRLDPDTKRKGLSHLPPLCMFTSEDSHYSMLKAAHWLGIGMDNVIRVKTNERGQMICSFL   83 (448)
Q Consensus         4 ~g~~t~ggT~an~~al~~a~~~~~~~~~~~G~~~~~~~~Vl~~~~~H~s~~~~~~~~g~~~~~v~~v~~~~~g~id~e~L   83 (448)
                      .+++.++|+++|+.++.+...              +++.|+++...|.|+.++++..+.   .++.++++     |++++
T Consensus       100 ~al~~~SG~~an~~~i~al~~--------------~~d~v~~d~~~h~si~~g~~~~~~---~~~~~~hn-----d~~~l  157 (383)
T d1bs0a_         100 RALLFISGFAANQAVIAAMMA--------------KEDRIAADRLSHASLLEAASLSPS---QLRRFAHN-----DVTHL  157 (383)
T ss_dssp             EEEEESCHHHHHHHHHHHHCC--------------TTCEEEEETTCCHHHHHHHHTSSS---EEEEECTT-----CHHHH
T ss_pred             ceEEecccchhhHHHHHhhcC--------------CCceEEeeccccHHHhhccccCCC---cceEecch-----HHHHH
Confidence            468999999999998877554              567899999999999999997777   78888887     99999


Q ss_pred             HHHHHHhhhcCCCcEEEEEeccCCccccccCHHHHHHHHHHcCCEEEEecccccccccccchhh-hhcCCCCccEEEECC
Q psy14299         84 EQTIQTSLAEKKIPLFVNATAGTTVLGAFDPLDEIATVCEKYDLWMHVDACWGGSLIFSEKYSF-VLKGINRANSVSWNP  162 (448)
Q Consensus        84 e~~l~~~~~~~~~~~lVv~~~~~t~tG~~~~l~~I~~ia~~~g~~l~VD~A~~~~~~~~~~~~~-~~~~~~~aD~~~~s~  162 (448)
                      ++.+.+.   ....++|++....+++|.+.|+++|.++|++||++++||+||+.+.+....... ...+. ..|.+..+.
T Consensus       158 e~~l~~~---~~~~~~vv~e~v~s~~G~i~pl~~l~~l~~~~~~~livDeah~~gv~G~~g~G~~~~~~~-~~~~~~~t~  233 (383)
T d1bs0a_         158 ARLLASP---CPGQQMVVTEGVFSMDGDSAPLAEIQQVTQQHNGWLMVDDAHGTGVIGEQGRGSCWLQKV-KPELLVVTF  233 (383)
T ss_dssp             HHHHHSC---CSSCEEEEEESBCTTTCCBCCHHHHHHHHHHTTCEEEEECTTTTTTSSGGGCCHHHHTTC-CCSEEEEES
T ss_pred             HHHhccc---CCCceEEEecCCCCCCCcccchhHHHHHHHhcCcEEEeecceeeeecCCcccchHHHcCC-ccccccccc
Confidence            9999763   335678999999999999999999999999999999999999999874332211 11122 357778888


Q ss_pred             ccccCCCCceEEEEEeccchhhhhccCCcccccccCcccccccCCCCCcccCCCCchhHHHHHHHHHhChHHHHHHHHHh
Q psy14299        163 HKMLGAPLQCSILLIKEKGLLHQANATAATYLFQQDKFYDVSFDTGDKSVQCGRKVDAFKLWLMWKARGNLGFRHFVDNA  242 (448)
Q Consensus       163 hK~l~~P~g~G~l~vr~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~g~~~~i~~~  242 (448)
                      .|.++++.  |++ +.............++|.++....                   +                      
T Consensus       234 ~ka~g~~G--g~v-~~~~~~~~~l~~~~~~~~~s~~~~-------------------p----------------------  269 (383)
T d1bs0a_         234 GKGFGVSG--AAV-LCSSTVADYLLQFARHLIYSTSMP-------------------P----------------------  269 (383)
T ss_dssp             SSTTSSCC--EEE-EECHHHHHHHHHHCHHHHSSBCCC-------------------H----------------------
T ss_pred             cccccccc--ccc-ccchhHHHHHHhhchhhhhccccc-------------------c----------------------
Confidence            89888653  333 334444444444455555432200                   0                      


Q ss_pred             hhhccCCCccchhhhhhhhhhhhhhhhhhhhhhhccccccccccCCCCCccccccchhhHHHHHHHHHhcCccHHHHHHH
Q psy14299        243 VDCSRGSMTFSTLLCFDLQGLLHQANATAATYLFQQDKFYDVSFDTGDKSVQCGRKVDAFKLWLMWKARGNLGFRHFVDN  322 (448)
Q Consensus       243 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~  322 (448)
                                                                              +...++..+++.......+.+.++
T Consensus       270 --------------------------------------------------------~~~aa~~~a~~~~~~~~~~~~~~~  293 (383)
T d1bs0a_         270 --------------------------------------------------------AQAQALRASLAVIRSDEGDARREK  293 (383)
T ss_dssp             --------------------------------------------------------HHHHHHHHHHHHHHSHHHHHHHHH
T ss_pred             --------------------------------------------------------hHHHHHHHHHHHHHhhhhHHHHHH
Confidence                                                                    001111223333344555667778


Q ss_pred             HHHHHHHHHHHhhcCCCeEEeccCCceeeEEEEeeccCCCccccchhhhhhhhhhhHHHHHHHHhCCcEEEEe----eec
Q psy14299        323 AVDCSRYFLSQISQRPGFRLVIPEFQCTNICFWFIPVSLRDKVEDETWWSTLSKVAPRIKEKLVLGGTLMIGY----QPL  398 (448)
Q Consensus       323 ~~~l~~~~~~~L~~~pg~~l~~~~~~~~~v~f~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~L~~~g~~~~~~----~~~  398 (448)
                      ..++.+++++.|.++ |+.+.  +..++++.+.+..                +..+.++.+.|.++| +++.+    .++
T Consensus       294 l~~~~~~~~~~l~~~-g~~~~--~~~s~Ii~v~~g~----------------~~~a~~~~~~L~~~G-i~v~~~~~PtVp  353 (383)
T d1bs0a_         294 LAALITRFRAGVQDL-PFTLA--DSCSAIQPLIVGD----------------NSRALQLAEKLRQQG-CWVTAIRPPTVP  353 (383)
T ss_dssp             HHHHHHHHHHHHTTS-SCEEC--SCCSSBCCEEEES----------------HHHHHHHHHHHHHTT-EECCEECTTSSC
T ss_pred             HHHHHHHHHHHHHhc-CCccC--CCCCCEEEEEECC----------------HHHHHHHHHHHHHCC-ceEEEEcCCCCC
Confidence            888999999999998 78874  4456666554321                012347889999999 55443    334


Q ss_pred             CCcccccEEEEEecCCCCCCHHHHHHHHHHHHHH
Q psy14299        399 QHRNLHNFFRLVTTCHPASSRQDMDYAIDQIELR  432 (448)
Q Consensus       399 ~g~~~~~~lRis~~~~~~~t~edid~l~~al~~~  432 (448)
                      .|.   ..+|+++  |..+|+||||+++++|+.+
T Consensus       354 ~g~---~~lRi~~--~a~ht~edid~l~~~L~~~  382 (383)
T d1bs0a_         354 AGT---ARLRLTL--TAAHEMQDIDRLLEVLHGN  382 (383)
T ss_dssp             TTC---EEECCBC--CTTCCHHHHHHHHHHHHHH
T ss_pred             CCC---ceEEEEe--CCCCCHHHHHHHHHHHHhc
Confidence            555   7899999  8999999999999999875

>d1iuga_ c.67.1.3 (A:) Subgroup IV putative aspartate aminotransferase {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: Cystathionine synthase-like
domain: Subgroup IV putative aspartate aminotransferase
species: Thermus thermophilus [TaxId: 274]

Probab=99.86  E-value=2e-20  Score=184.58  Aligned_cols=289  Identities=15%  Similarity=0.052  Sum_probs=191.1

Q ss_pred             cEEEeCcHHHHHHHHHHHHHHhcCCcccccCCCCCCCeEEEecCCCchH--HHHHHHHhCCCCCcEEEEecCCCCCcCHH
Q psy14299          4 KPFLLPGGSISNMYSICLARYRLDPDTKRKGLSHLPPLCMFTSEDSHYS--MLKAAHWLGIGMDNVIRVKTNERGQMICS   81 (448)
Q Consensus         4 ~g~~t~ggT~an~~al~~a~~~~~~~~~~~G~~~~~~~~Vl~~~~~H~s--~~~~~~~~g~~~~~v~~v~~~~~g~id~e   81 (448)
                      ..+|+.|||.++-.++.....              +++.|++....+++  +.+.++..+.   .+..+..++...++++
T Consensus        52 ~i~~~gsgT~a~e~~~~nl~~--------------~g~~vlv~~~G~f~~~~~~~a~~~~~---~~~~~~~~~g~~~~~~  114 (348)
T d1iuga_          52 VLILTGSGTLAMEALVKNLFA--------------PGERVLVPVYGKFSERFYEIALEAGL---VVERLDYPYGDTPRPE  114 (348)
T ss_dssp             EEEEESCHHHHHHHHHHHHCC--------------TTCEEEEEECSHHHHHHHHHHHHTTC---EEEEEECCTTCCCCTT
T ss_pred             EEEEeCchHHHHHHHHHhccc--------------ccccceeecchHHHHHHHHHHHhcCc---ccccccccCCCccccc
Confidence            367899999997666655433              44455566667775  4566666666   6777777665555554


Q ss_pred             HHHHHHHHhhhcCCCcEEEEEeccCCccccccCHHHHHHHHHHcC--CEEEEecccccccccccchhhhhcCCCCccEEE
Q psy14299         82 FLEQTIQTSLAEKKIPLFVNATAGTTVLGAFDPLDEIATVCEKYD--LWMHVDACWGGSLIFSEKYSFVLKGINRANSVS  159 (448)
Q Consensus        82 ~Le~~l~~~~~~~~~~~lVv~~~~~t~tG~~~~l~~I~~ia~~~g--~~l~VD~A~~~~~~~~~~~~~~~~~~~~aD~~~  159 (448)
                      ++         ...+++.|+++|.+|.+|.+.|+++|+++||+|+  .+++||+.++.+..+.+....      .+|+++
T Consensus       115 ~~---------~~~~~~~v~~~h~eTstG~~~~i~~i~~~~~~~~~~~l~~vDavss~g~~~i~~d~~------~iD~~~  179 (348)
T d1iuga_         115 DV---------AKEGYAGLLLVHSETSTGALADLPALARAFKEKNPEGLVGADMVTSLLVGEVALEAM------GVDAAA  179 (348)
T ss_dssp             TS---------CCSSCSEEEEESEETTTTEECCHHHHHHHHHHHCTTCEEEEECTTTBTTBCCCSGGG------TCSEEE
T ss_pred             cc---------cccCCCeeEEEecchhhhhhccHHHHHHHHHhhhccceeechhhhcccccccccccc------cCCEEE
Confidence            32         1235789999999999999999999999999985  789999999988876553221      479999


Q ss_pred             ECCccccCCCCceEEEEEeccchhhhhccCCcccccccCcccccccCCCCCcccCCCCchhHHHHHHHHHhChHHHHHHH
Q psy14299        160 WNPHKMLGAPLQCSILLIKEKGLLHQANATAATYLFQQDKFYDVSFDTGDKSVQCGRKVDAFKLWLMWKARGNLGFRHFV  239 (448)
Q Consensus       160 ~s~hK~l~~P~g~G~l~vr~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~g~~~~i  239 (448)
                      +++|||+++|+|+|+++++++. +.... ..+.|+....                                       .+
T Consensus       180 ~~sqK~l~gppG~~~v~~s~~~-le~~~-~~~~~~dl~~---------------------------------------~~  218 (348)
T d1iuga_         180 SGSQKGLMCPPGLGFVALSPRA-LERLK-PRGYYLDLAR---------------------------------------EL  218 (348)
T ss_dssp             EESSSTTCCCSCEEEEEECHHH-HHTCC-CCSSTTCHHH---------------------------------------HH
T ss_pred             eccccceecCCceeeeeechHH-Hhhhc-ccccccchhh---------------------------------------hh
Confidence            9999999999999999998864 33321 1122221100                                       00


Q ss_pred             HHhhhhccCCCccchhhhhhhhhhhhhhhhhhhhhhhccccccccccCCCCCccccccchhhHHHHHHHHHhcCccHHHH
Q psy14299        240 DNAVDCSRGSMTFSTLLCFDLQGLLHQANATAATYLFQQDKFYDVSFDTGDKSVQCGRKVDAFKLWLMWKARGNLGFRHF  319 (448)
Q Consensus       240 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~  319 (448)
                      +...                                             .++...=++...+.++..+++....+|.+..
T Consensus       219 ~~~~---------------------------------------------~~~~~~Tp~v~~i~~l~~aL~~~~~~~~~~~  253 (348)
T d1iuga_         219 KAQK---------------------------------------------EGESAWTPAINLVLAVAAVLEEVLPRLEEHL  253 (348)
T ss_dssp             HHHT---------------------------------------------TTCCSSCCCHHHHHHHHHHHHHHGGGHHHHH
T ss_pred             hhhc---------------------------------------------cCcccccccchHHHHHHHHHHHHHHHHhHHH
Confidence            0000                                             0000001123345566666776666665554


Q ss_pred             HHHHHHHHHHHHHHhhcCCCeEEeccCCcee-eEEEEeeccCCCccccchhhhhhhhhhhHHHHHHHHhCCcEEEEee--
Q psy14299        320 VDNAVDCSRYFLSQISQRPGFRLVIPEFQCT-NICFWFIPVSLRDKVEDETWWSTLSKVAPRIKEKLVLGGTLMIGYQ--  396 (448)
Q Consensus       320 ~~~~~~l~~~~~~~L~~~pg~~l~~~~~~~~-~v~f~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~L~~~g~~~~~~~--  396 (448)
                       ++.....+.++..++.. |++++ ++..++ +++|++ |.+++.               .++.+.|.++|++ +.++  
T Consensus       254 -~~~~~~~~~~~~~~~~~-gl~~~-~~~~s~~v~~~~~-P~g~~~---------------~~~~~~l~~~gi~-i~~G~~  313 (348)
T d1iuga_         254 -ALKAWQNALLYGVGEEG-GLRPV-PKRFSPAVAAFYL-PEGVPY---------------ARVKEAFAQRGAV-IAGGQG  313 (348)
T ss_dssp             -HHHHHHHHHHHHHHHHT-TCEES-CSSBCTTCEEEEC-CTTCCH---------------HHHHHHHHTTTEE-CEECCG
T ss_pred             -HHHHHHHHHHhhhhhhh-hhccC-hhhcCCeEEEEEC-CCCCCH---------------HHHHHHHHHCCeE-EEcCcc
Confidence             44455566677766666 89987 444444 445543 555541               3788899999944 4433  


Q ss_pred             ecCCcccccEEEEEecCCCCCCHHHHHHHHHHHHHHHHHh
Q psy14299        397 PLQHRNLHNFFRLVTTCHPASSRQDMDYAIDQIELRGAEV  436 (448)
Q Consensus       397 ~~~g~~~~~~lRis~~~~~~~t~edid~l~~al~~~~~~~  436 (448)
                      ...|    ..+||++||  +++++|+++++++|+++.+++
T Consensus       314 ~l~~----~~~RIg~mG--~~~~~d~~~~~~~l~~~l~~~  347 (348)
T d1iuga_         314 PLKG----KVFRLSLMG--AYDRYEALGVAGMFREVLEEI  347 (348)
T ss_dssp             GGTT----TEEEECCCS--SCCHHHHHHHHHHHHHHHHHH
T ss_pred             ccCC----CEEEEeCCC--CCCHHHHHHHHHHHHHHHHHh
Confidence            2223    589999985  788999999999999998864

>d1v72a1 c.67.1.1 (A:6-350) Phenylserine aldolase PSALD {Pseudomonas putida [TaxId: 303]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: AAT-like
domain: Phenylserine aldolase PSALD
species: Pseudomonas putida [TaxId: 303]

Probab=99.86  E-value=5.8e-21  Score=184.01  Aligned_cols=286  Identities=13%  Similarity=0.085  Sum_probs=183.0

Q ss_pred             CccEEEeCcHHHHHHHHHHHHHHhcCCcccccCCCCCCCeEEEecCCCchHHHHHHHHhCCCCCcEEEEecCCCCCcCHH
Q psy14299          2 NLKPFLLPGGSISNMYSICLARYRLDPDTKRKGLSHLPPLCMFTSEDSHYSMLKAAHWLGIGMDNVIRVKTNERGQMICS   81 (448)
Q Consensus         2 ~~~g~~t~ggT~an~~al~~a~~~~~~~~~~~G~~~~~~~~Vl~~~~~H~s~~~~~~~~g~~~~~v~~v~~~~~g~id~e   81 (448)
                      +...+||+|||+||..++..++.              +...+++....|.+....+.........+..++...++.++++
T Consensus        54 ~~~v~f~~sGt~An~~a~~~~~~--------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  119 (345)
T d1v72a1          54 DVEVFLVPTGTAANALCLSAMTP--------------PWGNIYCHPASHINNDECGAPEFFSNGAKLMTVDGPAAKLDIV  119 (345)
T ss_dssp             CCEEEEESCHHHHHHHHHHTSCC--------------TTEEEEECTTSHHHHSSTTHHHHHTTSCEEEECCCGGGCCCHH
T ss_pred             CcEEEECCchHHHHHHHHHHHHh--------------cCCccccccccceeeechhhHHHhcCcccccccccccccccHH
Confidence            45688999999999999876654              4456778889999988776655443336777777778999999


Q ss_pred             HHHHHHHHhhhcCCCcEE-EEEeccCCccc---cccCHHHHHHHHHHcCCEEEEecccccccccccchhhhhcC-CCCcc
Q psy14299         82 FLEQTIQTSLAEKKIPLF-VNATAGTTVLG---AFDPLDEIATVCEKYDLWMHVDACWGGSLIFSEKYSFVLKG-INRAN  156 (448)
Q Consensus        82 ~Le~~l~~~~~~~~~~~l-Vv~~~~~t~tG---~~~~l~~I~~ia~~~g~~l~VD~A~~~~~~~~~~~~~~~~~-~~~aD  156 (448)
                      .+++.+.+.......+.. ++.....+..|   .+++++++.++|++||+++|+|++++.+....+........ ....+
T Consensus       120 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~~~~~~  199 (345)
T d1v72a1         120 RLRERTREKVGDVHTTQPACVSITQATEVGSIYTLDEIEAIGDVCKSSSLGLHMDGSRFANALVSLGCSPAEMTWKAGVD  199 (345)
T ss_dssp             HHHHHTTSSTTCTTSCEEEEEEEESSCTTSCCCCHHHHHHHHHHHHHTTCEEEEEETTHHHHHHHHTCCTTTTTGGGTCC
T ss_pred             HhhhhhcccccccccccceeeeeeccccccccccchhhhhHHHHHHhcCceeeecccccceeccccccCHHHhhcccccc
Confidence            999999764433333433 22232333333   45678889999999999999999998766543322211111 11245


Q ss_pred             EEEECCccccCCCCceEEEEEeccchhhhhccCCcccccccCcccccccCCCCCcccCCCCchhHHHHHHHHHhChHHHH
Q psy14299        157 SVSWNPHKMLGAPLQCSILLIKEKGLLHQANATAATYLFQQDKFYDVSFDTGDKSVQCGRKVDAFKLWLMWKARGNLGFR  236 (448)
Q Consensus       157 ~~~~s~hK~l~~P~g~G~l~vr~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~g~~  236 (448)
                      .++.+.+|++..+.  +...............   ......                .+..                   
T Consensus       200 ~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~---~~~~~~----------------~~~~-------------------  239 (345)
T d1v72a1         200 ALSFGATKNGVLAA--EAIVLFNTSLATEMSY---RRKRAG----------------HLSS-------------------  239 (345)
T ss_dssp             EEEECCGGGTCSSC--EEEEESSGGGHHHHHH---HHHHTT----------------CCCS-------------------
T ss_pred             ccccCccccccccc--cccccchhhhhhhccc---cccccc----------------cccc-------------------
Confidence            66777776655443  3333433322111100   000000                0000                   


Q ss_pred             HHHHHhhhhccCCCccchhhhhhhhhhhhhhhhhhhhhhhccccccccccCCCCCccccccchhhHHHHHHHHHhcCccH
Q psy14299        237 HFVDNAVDCSRGSMTFSTLLCFDLQGLLHQANATAATYLFQQDKFYDVSFDTGDKSVQCGRKVDAFKLWLMWKARGNLGF  316 (448)
Q Consensus       237 ~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~  316 (448)
                                                                                    ........+.........
T Consensus       240 --------------------------------------------------------------~~~~aa~~~~~~~~~~~~  257 (345)
T d1v72a1         240 --------------------------------------------------------------KMRFLSAQIDAYLTDDLW  257 (345)
T ss_dssp             --------------------------------------------------------------STHHHHHHHHHHTSTTHH
T ss_pred             --------------------------------------------------------------hhhHHhhhhHHHHHHhhh
Confidence                                                                          001112223334455566


Q ss_pred             HHHHHHHHHHHHHHHHHhhcCCCeEEeccCCceeeEEEEeeccCCCccccchhhhhhhhhhhHHHHHHHHhCCcEEEEee
Q psy14299        317 RHFVDNAVDCSRYFLSQISQRPGFRLVIPEFQCTNICFWFIPVSLRDKVEDETWWSTLSKVAPRIKEKLVLGGTLMIGYQ  396 (448)
Q Consensus       317 ~~~~~~~~~l~~~~~~~L~~~pg~~l~~~~~~~~~v~f~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~L~~~g~~~~~~~  396 (448)
                      ++...+...+.+++.+.+.++|++++. .+...+++.+.+.                     ..+.++|+++|+.+ .. 
T Consensus       258 ~~~~~~~~~~~~~~~~~l~~~~g~~~~-~p~~~niv~~~~~---------------------~~~~~~L~~~gi~v-~~-  313 (345)
T d1v72a1         258 LRNARKANAAAQRLAQGLEGLGGVEVL-GGTEANILFCRLD---------------------SAMIDALLKAGFGF-YH-  313 (345)
T ss_dssp             HHHHHHHHHHHHHHHHHHTTCTTEEEE-SCCCSSEEEEEEC---------------------HHHHHHHHHTTCBC-BC-
T ss_pred             hhhccchhhHHHHHHHHHHhcCCcEec-cCCCccEEEEEcC---------------------HHHHHHHHHcCCCc-cc-
Confidence            667777888899999999999999987 6666777666431                     25678899999543 22 


Q ss_pred             ecCCcccccEEEEEecCCCCCCHHHHHHHHHHHHHH
Q psy14299        397 PLQHRNLHNFFRLVTTCHPASSRQDMDYAIDQIELR  432 (448)
Q Consensus       397 ~~~g~~~~~~lRis~~~~~~~t~edid~l~~al~~~  432 (448)
                      ...+.   +.+||++  +.+||+||||+++++|+++
T Consensus       314 ~~~~~---~~lR~~~--~~~~T~edid~~le~lr~a  344 (345)
T d1v72a1         314 DRWGP---NVVRFVT--SFATTAEDVDHLLNQVRLA  344 (345)
T ss_dssp             SSSST---TEEEEEC--CTTCCHHHHHHHHHHHHHT
T ss_pred             cCCCC---CEEEEEC--CCCCCHHHHHHHHHHHHHh
Confidence            22333   7999999  7999999999999999875

>d1wyua1 c.67.1.7 (A:1-437) Glycine dehydrogenase (decarboxylating) subunit 1 {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: Glycine dehydrogenase subunits (GDC-P)
domain: Glycine dehydrogenase (decarboxylating) subunit 1
species: Thermus thermophilus [TaxId: 274]

Probab=99.78  E-value=1.4e-17  Score=167.37  Aligned_cols=297  Identities=13%  Similarity=0.079  Sum_probs=194.1

Q ss_pred             CcHHHHHHHHHHHHHHhcCCcccccCCCCCCCeEEEecCCCchHHH----HHHHHhCCCCCcEEEEecCCCCCcCHHHHH
Q psy14299          9 PGGSISNMYSICLARYRLDPDTKRKGLSHLPPLCMFTSEDSHYSML----KAAHWLGIGMDNVIRVKTNERGQMICSFLE   84 (448)
Q Consensus         9 ~ggT~an~~al~~a~~~~~~~~~~~G~~~~~~~~Vl~~~~~H~s~~----~~~~~~g~~~~~v~~v~~~~~g~id~e~Le   84 (448)
                      ..|..+...|+..+++..            ....++++...|++..    ..++..|+   +++.++.++++..+ ++  
T Consensus       131 ~~ga~a~~~~~~~~~~~~------------~~~~~~v~~~~~p~~~~v~~t~a~~~g~---~vv~v~~~~~~~~~-~~--  192 (437)
T d1wyua1         131 YDGATALAEGVLLALRET------------GRMGVLVSQGVHPEYRAVLRAYLEAVGA---KLLTLPLEGGRTPL-PE--  192 (437)
T ss_dssp             SSHHHHHHHHHHHHHHHH------------TCCEEEEETTSCHHHHHHHHHHHHHTTC---EEEEECCBTTBCCC-CC--
T ss_pred             hHHHHHHHHHHHHHHhhh------------cccccccccccChHHhhhhhhhccccee---eEEeeecccccchh-hh--
Confidence            346666677776666542            2335778889997754    33456677   79999987554433 22  


Q ss_pred             HHHHHhhhcCCCcEEEEEeccCCccccccCHHHHHHHHHHcCCEEEEecccccccccccchhhhhcCCCCccEEEECCcc
Q psy14299         85 QTIQTSLAEKKIPLFVNATAGTTVLGAFDPLDEIATVCEKYDLWMHVDACWGGSLIFSEKYSFVLKGINRANSVSWNPHK  164 (448)
Q Consensus        85 ~~l~~~~~~~~~~~lVv~~~~~t~tG~~~~l~~I~~ia~~~g~~l~VD~A~~~~~~~~~~~~~~~~~~~~aD~~~~s~hK  164 (448)
                        +      +..+..|+++.++| .|.+.++++|++++|+.|..+++|+..-+.....+...      -++|+++.+ ||
T Consensus       193 --~------~~~~Aavmi~~Pnt-~G~~ed~~~i~~~~h~~G~l~~~~ad~~al~~l~~Pg~------~GaDi~~g~-~q  256 (437)
T d1wyua1         193 --V------GEEVGAVVVQNPNF-LGALEDLGPFAEAAHGAGALFVAVADPLSLGVLKPPGA------YGADIAVGD-GQ  256 (437)
T ss_dssp             --C------CTTEEEEEEESSCT-TSBCCCHHHHHHHHHHTTCEEEEECCTTGGGTBCCHHH------HTCSEEEEE-CT
T ss_pred             --h------ccceeEEEEccccc-cccccchHHHHHHhhhccceEEeeechhhhhccccccc------cccceEeec-cc
Confidence              2      23577899999877 89999999999999999999888875432222111111      158999999 77


Q ss_pred             ccCCCCce-----EEEEEeccchhhhhccCCcccccccCcccccccCCCCCcccCCCCchhHHHHHHHHHhChHHHHHHH
Q psy14299        165 MLGAPLQC-----SILLIKEKGLLHQANATAATYLFQQDKFYDVSFDTGDKSVQCGRKVDAFKLWLMWKARGNLGFRHFV  239 (448)
Q Consensus       165 ~l~~P~g~-----G~l~vr~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~g~~~~i  239 (448)
                      .++.|.|.     |++.++++ +.+    ..|+.+...+....+...   +.+..                      ..-
T Consensus       257 ~fg~p~g~GGP~~G~~a~~~~-l~r----~lPgrivg~s~d~~G~~~---~~l~l----------------------qtr  306 (437)
T d1wyua1         257 SLGLPMGFGGPHFGFLATKKA-FVR----QLPGRLVSETVDVEGRRG---FILTL----------------------QAR  306 (437)
T ss_dssp             TTTCCCGGGCSCCEEEEECGG-GGG----GCCSCCEEEEEBTTSCEE---EEECC----------------------GGG
T ss_pred             eeccccCCCcCccccccccch-hhc----cccccccccccccCCccc---ceeec----------------------ccc
Confidence            66666655     88888764 322    233333322211111000   00000                      011


Q ss_pred             HHhhhhccCCCccchhhhhhhhhhhhhhhhhhhhhhhccccccccccCCCCCccccccchhhHHHHHHHHHhcCccHHHH
Q psy14299        240 DNAVDCSRGSMTFSTLLCFDLQGLLHQANATAATYLFQQDKFYDVSFDTGDKSVQCGRKVDAFKLWLMWKARGNLGFRHF  319 (448)
Q Consensus       240 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~  319 (448)
                      +++++.+++.+++|+             |+                            ...++..++.+.++|.+|++++
T Consensus       307 eqhIrRekatsnict-------------~q----------------------------~l~a~~a~~Y~~~lG~~GL~~i  345 (437)
T d1wyua1         307 EQYIRRAKAKSNITT-------------NA----------------------------QLTALMGAMYLAALGPEGLREV  345 (437)
T ss_dssp             SHHHHGGGSSCCCCS-------------CC----------------------------HHHHHHHHHHHHHHHHHHHHHH
T ss_pred             cccccccccccchhh-------------HH----------------------------HHHHHHHHHHhhhcCcccHHHH
Confidence            345555666677666             11                            2336777889999999999999


Q ss_pred             HHHHHHHHHHHHHHhhcCCCeEEeccCCceeeEEEEeeccCCCccccchhhhhhhhhhhHHHHHHHHhCCcEEEEeeecC
Q psy14299        320 VDNAVDCSRYFLSQISQRPGFRLVIPEFQCTNICFWFIPVSLRDKVEDETWWSTLSKVAPRIKEKLVLGGTLMIGYQPLQ  399 (448)
Q Consensus       320 ~~~~~~l~~~~~~~L~~~pg~~l~~~~~~~~~v~f~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~L~~~g~~~~~~~~~~  399 (448)
                      .++...+++|+.++|.+++|++++.+.+.+..+++.+.   .               ...++.++|.+.|+ +. +..+.
T Consensus       346 a~~a~~~A~yl~~~L~~~~g~~~~~~~~~f~ef~v~~~---~---------------~~~~i~k~L~d~G~-~~-~~~~~  405 (437)
T d1wyua1         346 ALKSVEMAHKLHALLLEVPGVRPFTPKPFFNEFALALP---K---------------DPEAVRRALAERGF-HG-ATPVP  405 (437)
T ss_dssp             HHHHHHHHHHHHHHHTTSTTCEECSCSSBCSEEEEECS---S---------------CHHHHHHHHHHTTC-CC-CEECC
T ss_pred             HHHHHHHHHHHHHHhhhcCCeeccCCCCeeeEEEEECC---C---------------CHHHHHHHHHhCCC-CC-Ccccc
Confidence            99999999999999999999997633445566666431   1               12478899999993 32 22222


Q ss_pred             CcccccEEEEEecCCCCCCHHHHHHHHHHHHHH
Q psy14299        400 HRNLHNFFRLVTTCHPASSRQDMDYAIDQIELR  432 (448)
Q Consensus       400 g~~~~~~lRis~~~~~~~t~edid~l~~al~~~  432 (448)
                      ....++.+.+++  ...+|++|||+|+++|+++
T Consensus       406 ~~~~~~~lli~~--TE~~tkeeiD~~v~al~ei  436 (437)
T d1wyua1         406 REYGENLALFAA--TELHEEEDLLALREALKEV  436 (437)
T ss_dssp             TTSCSSEEEEEC--CTTCCHHHHHHHHHHHHHH
T ss_pred             cCCCCCeEEEec--CCCCCHHHHHHHHHHHHHh
Confidence            111237899999  5899999999999999986

>d1d2fa_ c.67.1.3 (A:) Modulator in mal gene expression, MalY {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: Cystathionine synthase-like
domain: Modulator in mal gene expression, MalY
species: Escherichia coli [TaxId: 562]

Probab=99.75  E-value=1.2e-16  Score=157.40  Aligned_cols=155  Identities=12%  Similarity=-0.056  Sum_probs=112.7

Q ss_pred             cEEEeCcHHHHHHHHHHHHHHhcCCcccccCCCCCCCeEEEecCCCchHHHHHHHHhCCCCCcEEEEecC---CCCCcCH
Q psy14299          4 KPFLLPGGSISNMYSICLARYRLDPDTKRKGLSHLPPLCMFTSEDSHYSMLKAAHWLGIGMDNVIRVKTN---ERGQMIC   80 (448)
Q Consensus         4 ~g~~t~ggT~an~~al~~a~~~~~~~~~~~G~~~~~~~~Vl~~~~~H~s~~~~~~~~g~~~~~v~~v~~~---~~g~id~   80 (448)
                      ..++|+|+++++..++.+..+              +++.|+++...|..+...++..|.   .++.++.+   +++.+|+
T Consensus        60 ~i~it~G~~~~l~~~~~~l~~--------------~gd~Vlv~~P~y~~~~~~~~~~g~---~~~~v~~~~~~~~~~~d~  122 (361)
T d1d2fa_          60 TVVYGPSVIYMVSELIRQWSE--------------TGEGVVIHTPAYDAFYKAIEGNQR---TVMPVALEKQADGWFCDM  122 (361)
T ss_dssp             GEEEESCHHHHHHHHHHHSSC--------------TTCEEEEEESCCHHHHHHHHHTTC---EEEEEECEECSSSEECCH
T ss_pred             eEEEeCCHHHHHHHHhhhccc--------------cccccccccccccchhHHHHhhcc---eEEeeccccccccccccc
Confidence            478999999998777665433              677899999999999999999888   67777654   3447899


Q ss_pred             HHHHHHHHHhhhcCCCcEEEEEeccCCccccccC---HHHHHHHHHHcCCEEEEecccccccccccchhhhhcCCCCccE
Q psy14299         81 SFLEQTIQTSLAEKKIPLFVNATAGTTVLGAFDP---LDEIATVCEKYDLWMHVDACWGGSLIFSEKYSFVLKGINRANS  157 (448)
Q Consensus        81 e~Le~~l~~~~~~~~~~~lVv~~~~~t~tG~~~~---l~~I~~ia~~~g~~l~VD~A~~~~~~~~~~~~~~~~~~~~aD~  157 (448)
                      +.+++.+.+     .++++++++.++|+||...+   +++|+++|+++|+++++|++|....+..............-.+
T Consensus       123 ~~~~~~~~~-----~~~~~i~l~~p~NPTG~~~s~~~~~~i~~~~~~~~~~lI~De~y~~~~~~~~~~~~~~~~~~~~~v  197 (361)
T d1d2fa_         123 GKLEAVLAK-----PECKIMLLCSPQNPTGKVWTCDELEIMADLCERHGVRVISDEIHMDMVWGEQPHIPWSNVARGDWA  197 (361)
T ss_dssp             HHHHHHHTS-----TTEEEEEEESSCTTTCCCCCTTHHHHHHHHHHHTTCEEEEECTTTTCBCSSSCCCCGGGTCCSSEE
T ss_pred             ccchhhccc-----CCceeEEecccccccccccchhhhhhhhhhhhhhheeeeecccccccccccccccccccccccccc
Confidence            999999855     36889999999999997765   7889999999999999999998654321111111111111235


Q ss_pred             EEECCccccCCC-CceEEEEEecc
Q psy14299        158 VSWNPHKMLGAP-LQCSILLIKEK  180 (448)
Q Consensus       158 ~~~s~hK~l~~P-~g~G~l~vr~~  180 (448)
                      +..++.|.++.| ..+|++++...
T Consensus       198 ~~~s~SK~~~~~g~R~g~~~~~~~  221 (361)
T d1d2fa_         198 LLTSGSKSFNIPALTGAYGIIENS  221 (361)
T ss_dssp             EEECSHHHHTCGGGCCEEEEECSH
T ss_pred             cccccccccccccccceeeecchh
Confidence            667788877655 35677666543

>d1iaya_ c.67.1.4 (A:) 1-aminocyclopropane-1-carboxylate synthase (ACC synthase) {Tomato (Lycopersicon esculentum) [TaxId: 4081]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: GABA-aminotransferase-like
domain: 1-aminocyclopropane-1-carboxylate synthase (ACC synthase)
species: Tomato (Lycopersicon esculentum) [TaxId: 4081]

Probab=99.74  E-value=1.3e-16  Score=161.00  Aligned_cols=162  Identities=10%  Similarity=0.146  Sum_probs=118.9

Q ss_pred             cEEEeCcHHHHHHHHHHHHHHhcCCcccccCCCCCCCeEEEecCCCchHHHHHHHHh-CCCCCcEEEEecCC--CCCcCH
Q psy14299          4 KPFLLPGGSISNMYSICLARYRLDPDTKRKGLSHLPPLCMFTSEDSHYSMLKAAHWL-GIGMDNVIRVKTNE--RGQMIC   80 (448)
Q Consensus         4 ~g~~t~ggT~an~~al~~a~~~~~~~~~~~G~~~~~~~~Vl~~~~~H~s~~~~~~~~-g~~~~~v~~v~~~~--~g~id~   80 (448)
                      ..++|+|+++++..++.+...              +++.|+++...|.++...+... |+   +++.++.+.  ++.+|+
T Consensus       110 ~Ivit~G~~~al~~~~~~l~~--------------~Gd~Vlv~~P~y~~~~~~~~~~~g~---~~v~v~~~~~~~~~~d~  172 (428)
T d1iaya_         110 RVVMAGGATGANETIIFCLAD--------------PGDAFLVPSPYYPAFNRDLRWRTGV---QLIPIHCESSNNFKITS  172 (428)
T ss_dssp             SCEEEEHHHHHHHHHHHHHCC--------------TTCEEEEESSCCTTHHHHTTTTTCC---EEEEECCCTTTTTCCCH
T ss_pred             hEEEcCCHHHHHHHHHHHhCC--------------CCCEEEEccCCchHHHHHHHHhcCC---eEEEeeccccccccccc
Confidence            478999999998888766544              6778999999998888877643 56   788888764  468999


Q ss_pred             HHHHHHHHHhhhcCCCcEEEEEeccCCccccccC---HHHHHHHHHHcCCEEEEecccccccccccchh---------hh
Q psy14299         81 SFLEQTIQTSLAEKKIPLFVNATAGTTVLGAFDP---LDEIATVCEKYDLWMHVDACWGGSLIFSEKYS---------FV  148 (448)
Q Consensus        81 e~Le~~l~~~~~~~~~~~lVv~~~~~t~tG~~~~---l~~I~~ia~~~g~~l~VD~A~~~~~~~~~~~~---------~~  148 (448)
                      ++++.+++.....+.++++++++.++|+||...+   +++|.++|++||+++++|++|+...+..+...         ..
T Consensus       173 ~~~~~~~~~~~~~~~~~~~~~l~nP~NPtG~~~s~~~~~~i~~~a~~~~~~vI~De~Y~~~~~~~~~~~s~~~~~~~~~~  252 (428)
T d1iaya_         173 KAVKEAYENAQKSNIKVKGLILTNPSNPLGTTLDKDTLKSVLSFTNQHNIHLVCDEIYAATVFDTPQFVSIAEILDEQEM  252 (428)
T ss_dssp             HHHHHHHHHHHHTTCCEEEEEEESSCTTTCCCCCHHHHHHHHHHHHTTTCEEEEECTTGGGCCSSSCCCCHHHHHTSGGG
T ss_pred             ccccchhhhhhccCCCceEEEEccCCCcccccccccccchhheeeccCcEEEEecccccccccCcccccccccccchhhc
Confidence            9999998876667778899999999999998766   78899999999999999999986543211110         00


Q ss_pred             hcCCCCccEEEECCccccCCC-CceEEEEEeccch
Q psy14299        149 LKGINRANSVSWNPHKMLGAP-LQCSILLIKEKGL  182 (448)
Q Consensus       149 ~~~~~~aD~~~~s~hK~l~~P-~g~G~l~vr~~~~  182 (448)
                      ......--.++.++.|.++.| .-+|.++..++.+
T Consensus       253 ~~~~~~~vi~~~s~SK~~~~~GlRiG~~~~~~~~l  287 (428)
T d1iaya_         253 TYCNKDLVHIVYSLSKDMGLPGFRVGIIYSFNDDV  287 (428)
T ss_dssp             TTSCTTSEEEEEESTTTSSCGGGCEEEEEESCHHH
T ss_pred             cccccceEEEEecCCCcccCCCcccccccccccch
Confidence            000001125677899988765 3577776655443

>d1m6sa_ c.67.1.1 (A:) Low-specificity threonine aldolase {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: AAT-like
domain: Low-specificity threonine aldolase
species: Thermotoga maritima [TaxId: 2336]

Probab=99.74  E-value=4.6e-18  Score=163.67  Aligned_cols=157  Identities=16%  Similarity=0.115  Sum_probs=103.2

Q ss_pred             cEEEeCcHHHHHHHHHHHHHHhcCCcccccCCCCCCCeEEEecCCCchHHHHHHHHhCCCCCcEEEEecCCCCCcCHHHH
Q psy14299          4 KPFLLPGGSISNMYSICLARYRLDPDTKRKGLSHLPPLCMFTSEDSHYSMLKAAHWLGIGMDNVIRVKTNERGQMICSFL   83 (448)
Q Consensus         4 ~g~~t~ggT~an~~al~~a~~~~~~~~~~~G~~~~~~~~Vl~~~~~H~s~~~~~~~~g~~~~~v~~v~~~~~g~id~e~L   83 (448)
                      .+++++|||+||+.++.+++.              +++.+++....|++........+.....+..++. ..+..|++.+
T Consensus        51 ~~~~~~sGt~A~~~al~a~~~--------------~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~  115 (343)
T d1m6sa_          51 AALFVPSGTMGNQVSIMAHTQ--------------RGDEVILEADSHIFWYEVGAMAVLSGVMPHPVPG-KNGAMDPDDV  115 (343)
T ss_dssp             EEEEESCHHHHHHHHHHHHCC--------------TTCEEEEETTCHHHHSSTTHHHHHTCCEEEEECE-ETTEECHHHH
T ss_pred             eEEEeCCHHHHHHHHHHHHhc--------------cCCceeccccccceeeecccccccccceeecccc-ccCccCHHHH
Confidence            478999999999999987665              3456777888888876554443332224555554 3667899999


Q ss_pred             HHHHHHhhhcCCCcEEEEEeccC-Cccccc---cCHHHHHHHHHHcCCEEEEecccccccccccchhhhhcCCCCccEEE
Q psy14299         84 EQTIQTSLAEKKIPLFVNATAGT-TVLGAF---DPLDEIATVCEKYDLWMHVDACWGGSLIFSEKYSFVLKGINRANSVS  159 (448)
Q Consensus        84 e~~l~~~~~~~~~~~lVv~~~~~-t~tG~~---~~l~~I~~ia~~~g~~l~VD~A~~~~~~~~~~~~~~~~~~~~aD~~~  159 (448)
                      +..+........++..++++... ++.|.+   +++++|+++|++||+++|+|++++.+.......... ......+..+
T Consensus       116 ~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~i~~~~~~~g~~~~~D~a~~~~~~~~~~~~~~-~~~~~~~~~~  194 (343)
T d1m6sa_         116 RKAIRPRNIHFPRTSLIAIENTHNRSGGRVVPLENIKEICTIAKEHGINVHIDGARIFNASIASGVPVK-EYAGYADSVM  194 (343)
T ss_dssp             HHHSCCSCTTSCCEEEEEEESSBTTTTSBCCCHHHHHHHHHHHHHHTCEEEEEETTHHHHHHHHCCCHH-HHHHTCSEEE
T ss_pred             HHhhhhhhcccccccccccccccccCCceecCHHHHHHHHHHHHhcCeEEEeccccccccccccccchh-hhcccccccc
Confidence            99997654444455665555544 444544   456788888899999999999988765432211110 0011346777


Q ss_pred             ECCccccCCCCceEEEE
Q psy14299        160 WNPHKMLGAPLQCSILL  176 (448)
Q Consensus       160 ~s~hK~l~~P~g~G~l~  176 (448)
                      ++.+|..+++.+.+...
T Consensus       195 ~~~~~~~~g~~~~~~~~  211 (343)
T d1m6sa_         195 FCLSKGLCAPVGSVVVG  211 (343)
T ss_dssp             EESSSTTCCSSCEEEEE
T ss_pred             ccccccccccccccccc
Confidence            78888777766555433

>d1mdoa_ c.67.1.4 (A:) Aminotransferase ArnB {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: GABA-aminotransferase-like
domain: Aminotransferase ArnB
species: Salmonella typhimurium [TaxId: 90371]

Probab=99.74  E-value=4.9e-17  Score=160.71  Aligned_cols=150  Identities=15%  Similarity=0.109  Sum_probs=118.9

Q ss_pred             cEEEeCcHHHHHHHHHHHHHHhcCCcccccCCCCCCCeEEEecCCCchHHHHHHHHhCCCCCcEEEEecCC-CCCcCHHH
Q psy14299          4 KPFLLPGGSISNMYSICLARYRLDPDTKRKGLSHLPPLCMFTSEDSHYSMLKAAHWLGIGMDNVIRVKTNE-RGQMICSF   82 (448)
Q Consensus         4 ~g~~t~ggT~an~~al~~a~~~~~~~~~~~G~~~~~~~~Vl~~~~~H~s~~~~~~~~g~~~~~v~~v~~~~-~g~id~e~   82 (448)
                      .+++|++||+|+.+++.++.-             .+++.|+++..+|.+...++...|.   ..+.+++++ .+.+|+++
T Consensus        48 ~ai~~~sgt~Al~~al~al~~-------------~~gdeVi~~~~~~~~~~~ai~~~g~---~pv~~d~~~~~~~~d~~~  111 (376)
T d1mdoa_          48 YAVAVSSATAGMHIALMALGI-------------GEGDEVITPSMTWVSTLNMIVLLGA---NPVMVDVDRDTLMVTPEH  111 (376)
T ss_dssp             EEEEESCHHHHHHHHHHHTTC-------------CTTCEEEEESSSCHHHHHHHHHTTC---EEEEECBCTTTCCBCHHH
T ss_pred             eEEEeCCHHHHHHHHHHHhCC-------------CCCCEEEEecccccccccchhcccc---ceeeecccccccCCCHHH
Confidence            378999999999999876422             2778899999999999999999999   778888876 47899999


Q ss_pred             HHHHHHHhhhcCCCcEEEEEeccCCccccccCHHHHHHHHHHcCCEEEEecccccccccccchhhhhcCCCCccEEEECC
Q psy14299         83 LEQTIQTSLAEKKIPLFVNATAGTTVLGAFDPLDEIATVCEKYDLWMHVDACWGGSLIFSEKYSFVLKGINRANSVSWNP  162 (448)
Q Consensus        83 Le~~l~~~~~~~~~~~lVv~~~~~t~tG~~~~l~~I~~ia~~~g~~l~VD~A~~~~~~~~~~~~~~~~~~~~aD~~~~s~  162 (448)
                      |++++.+      ++++|+++|   ..|...|+++|.++|++||++++.|+||+.|...-+...    +..+..++++.+
T Consensus       112 l~~~i~~------~tkaIi~~h---~~G~~~~~~~i~~i~~~~~i~vIeD~a~a~g~~~~~~~~----g~~g~~~~Sf~~  178 (376)
T d1mdoa_         112 IEAAITP------QTKAIIPVH---YAGAPADLDAIYALGERYGIPVIEDAAHATGTSYKGRHI----GARGTAIFSFHA  178 (376)
T ss_dssp             HHHHCCT------TEEEECCBC---GGGCCCCHHHHHHHHHHHTCCBCEECTTCTTCEETTEET----TSSSEEEEECCT
T ss_pred             HHHhcCC------CCeEEEEeC---CCCCccchhHHHHHHHhcCceEEeccchhccCeeCCeec----ccccCccccCCC
Confidence            9999965      588888775   579999999999999999999999999998876432211    111235677788


Q ss_pred             ccccCCCCceEEEEEeccchh
Q psy14299        163 HKMLGAPLQCSILLIKEKGLL  183 (448)
Q Consensus       163 hK~l~~P~g~G~l~vr~~~~~  183 (448)
                      +|.+.++. .|++++.++.+.
T Consensus       179 ~K~l~~g~-GG~i~t~~~~l~  198 (376)
T d1mdoa_         179 IKNITCAE-GGIVVTDNPQFA  198 (376)
T ss_dssp             TSSSCSSS-CEEEEESCHHHH
T ss_pred             cCCCCCCC-CCEEEEechhHH
Confidence            89997654 467777666543

>d1j32a_ c.67.1.1 (A:) Aspartate aminotransferase, AAT {Phormidium lapideum [TaxId: 32060]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: AAT-like
domain: Aspartate aminotransferase, AAT
species: Phormidium lapideum [TaxId: 32060]

Probab=99.74  E-value=1.7e-16  Score=158.14  Aligned_cols=286  Identities=12%  Similarity=0.053  Sum_probs=185.4

Q ss_pred             cEEEeCcHHHHHHHHHHHHHHhcCCcccccCCCCCCCeEEEecCCCchHHHHHHHHhCCCCCcEEEEecCC--CCCcCHH
Q psy14299          4 KPFLLPGGSISNMYSICLARYRLDPDTKRKGLSHLPPLCMFTSEDSHYSMLKAAHWLGIGMDNVIRVKTNE--RGQMICS   81 (448)
Q Consensus         4 ~g~~t~ggT~an~~al~~a~~~~~~~~~~~G~~~~~~~~Vl~~~~~H~s~~~~~~~~g~~~~~v~~v~~~~--~g~id~e   81 (448)
                      ..++|+|+++++..++.+..+              +++.|+++...+..+...++..|.   +++.++.+.  ++.+|++
T Consensus        92 ~i~it~G~~~al~~~~~~~~~--------------~gd~Vlv~~P~y~~~~~~~~~~~~---~~v~~~~~~~~~~~~d~~  154 (388)
T d1j32a_          92 NILVTNGGKQSIFNLMLAMIE--------------PGDEVIIPAPFWVSYPEMVKLAEG---TPVILPTTVETQFKVSPE  154 (388)
T ss_dssp             GEEEESHHHHHHHHHHHHHCC--------------TTCEEEEESSCCTHHHHHHHHTTC---EEEEECCCGGGTTCCCHH
T ss_pred             eEEEcCCHHHHHHHHHHHHhC--------------CCCEEEEcCCCcHHHHHHHHHhcC---eEEEEecccccccCCCHH
Confidence            468899999998888766543              677899999999999999998887   677777654  4579999


Q ss_pred             HHHHHHHHhhhcCCCcEEEEEeccCCccccccC---HHHHHHHHHHcCCEEEEecccccccccccchhhhhcCCC---Cc
Q psy14299         82 FLEQTIQTSLAEKKIPLFVNATAGTTVLGAFDP---LDEIATVCEKYDLWMHVDACWGGSLIFSEKYSFVLKGIN---RA  155 (448)
Q Consensus        82 ~Le~~l~~~~~~~~~~~lVv~~~~~t~tG~~~~---l~~I~~ia~~~g~~l~VD~A~~~~~~~~~~~~~~~~~~~---~a  155 (448)
                      +|++.+++      ++++++++.++|+||.+.+   +++|.++|++||+++++|.+|+......+..........   .-
T Consensus       155 ~l~~~~~~------~~~~~~~~~P~NPTG~~~~~~~~~~l~~~~~~~~~~iI~De~Y~~~~~~~~~~~s~~~~~~~~~~~  228 (388)
T d1j32a_         155 QIRQAITP------KTKLLVFNTPSNPTGMVYTPDEVRAIAQVAVEAGLWVLSDEIYEKILYDDAQHLSIGAASPEAYER  228 (388)
T ss_dssp             HHHHHCCT------TEEEEEEESSCTTTCCCCCHHHHHHHHHHHHHHTCEEEEECTTTTCBCTTCCCCCGGGSCHHHHHT
T ss_pred             HHHHhCCC------CCeEEEECCCCCCCCcccchhhhhhhhcccccCCeEEEchhhhhcccccCCCCCCHHHhCcccccc
Confidence            99998854      5789999999999998766   677888899999999999999765543221111000000   12


Q ss_pred             cEEEECCccccCCC-CceEEEEEeccchhhhhccCCcccccccCcccccccCCCCCcccCCCCchhHHHHHHHHHhChHH
Q psy14299        156 NSVSWNPHKMLGAP-LQCSILLIKEKGLLHQANATAATYLFQQDKFYDVSFDTGDKSVQCGRKVDAFKLWLMWKARGNLG  234 (448)
Q Consensus       156 D~~~~s~hK~l~~P-~g~G~l~vr~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~g  234 (448)
                      .++..|+.|.++.| .-+|+++. ++......... ..+...                                      
T Consensus       229 ~i~~~S~SK~~~~~GlRvG~~~~-~~~~~~~~~~~-~~~~~~--------------------------------------  268 (388)
T d1j32a_         229 SVVCSGFAKTYAMTGWRVGFLAG-PVPLVKAATKI-QGHSTS--------------------------------------  268 (388)
T ss_dssp             EEEEEESTTTTTCTTTCCEEEEC-CHHHHHHHHHH-HHTTTC--------------------------------------
T ss_pred             eeEecCChhhhhcchhHeEEEEE-CHHHHHHHHHh-hhhccc--------------------------------------
Confidence            36778899998766 33677655 33333222110 000000                                      


Q ss_pred             HHHHHHHhhhhccCCCccchhhhhhhhhhhhhhhhhhhhhhhccccccccccCCCCCccccccchhhHHHHHHHHHhcCc
Q psy14299        235 FRHFVDNAVDCSRGSMTFSTLLCFDLQGLLHQANATAATYLFQQDKFYDVSFDTGDKSVQCGRKVDAFKLWLMWKARGNL  314 (448)
Q Consensus       235 ~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  314 (448)
                                                                                  +.....+.++...+. ...+
T Consensus       269 ------------------------------------------------------------~~~~~~q~a~~~~~~-~~~~  287 (388)
T d1j32a_         269 ------------------------------------------------------------NVCTFAQYGAIAAYE-NSQD  287 (388)
T ss_dssp             ------------------------------------------------------------SCCHHHHHHHHHHHH-SCSH
T ss_pred             ------------------------------------------------------------cccHHHHHHHhhccc-chHH
Confidence                                                                        000000011111111 2334


Q ss_pred             cHHHHHHHHHHHHHHHHHHhhcCCCeEEeccCCceeeEEEEeeccCCCccccchhhhhhhhhhhHHHHHHHHh-CCcEEE
Q psy14299        315 GFRHFVDNAVDCSRYFLSQISQRPGFRLVIPEFQCTNICFWFIPVSLRDKVEDETWWSTLSKVAPRIKEKLVL-GGTLMI  393 (448)
Q Consensus       315 G~~~~~~~~~~l~~~~~~~L~~~pg~~l~~~~~~~~~v~f~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~L~~-~g~~~~  393 (448)
                      .++++.++..+.++++.+.|++++|+++  .+|..+.+.|.-.+....              ...++.+.|++ .| +.+
T Consensus       288 ~~~~~~~~~~~~~~~~~~~l~~~~g~~~--~~p~gg~~l~~~l~~~~~--------------~~~~~~~~ll~~~g-V~v  350 (388)
T d1j32a_         288 CVQEMLAAFAERRRYMLDALNAMPGLEC--PKPDGAFYMFPSIAKTGR--------------SSLDFCSELLDQHQ-VAT  350 (388)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHTCTTCBC--CCCCBTTEECCBCGGGTC--------------CHHHHHHHHHHHHC-EEC
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhCCCCEe--cCCCceEEEEEECCCCCC--------------CHHHHHHHHHHhCC-EEE
Confidence            5677778888889999999999999887  456667666532222111              12356677665 47 555


Q ss_pred             EeeecCCcccccEEEEEecCCCCCCHHHHHHHHHHHHHHHHHh
Q psy14299        394 GYQPLQHRNLHNFFRLVTTCHPASSRQDMDYAIDQIELRGAEV  436 (448)
Q Consensus       394 ~~~~~~g~~~~~~lRis~~~~~~~t~edid~l~~al~~~~~~~  436 (448)
                      .++...+.  ++++|+++.    +++++++..++.|+++.+.+
T Consensus       351 ~pG~~F~~--~~~~Rls~~----~~~e~l~~al~rl~~~l~~l  387 (388)
T d1j32a_         351 VPGAAFGA--DDCIRLSYA----TDLDTIKRGMERLEKFLHGI  387 (388)
T ss_dssp             EEGGGGTC--TTBEEEECC----SCHHHHHHHHHHHHHHHHHH
T ss_pred             EeccccCC--CCeEEEEEe----CCHHHHHHHHHHHHHHHHHh
Confidence            55544443  489999993    47888888888888877653

>d1m7ya_ c.67.1.4 (A:) 1-aminocyclopropane-1-carboxylate synthase (ACC synthase) {Apple (Malus domestica) [TaxId: 3750]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: GABA-aminotransferase-like
domain: 1-aminocyclopropane-1-carboxylate synthase (ACC synthase)
species: Apple (Malus domestica) [TaxId: 3750]

Probab=99.73  E-value=8.8e-16  Score=154.99  Aligned_cols=301  Identities=15%  Similarity=0.151  Sum_probs=187.6

Q ss_pred             cEEEeCcHHHHHHHHHHHHHHhcCCcccccCCCCCCCeEEEecCCCchHHHHHHHHh-CCCCCcEEEEecCC--CCCcCH
Q psy14299          4 KPFLLPGGSISNMYSICLARYRLDPDTKRKGLSHLPPLCMFTSEDSHYSMLKAAHWL-GIGMDNVIRVKTNE--RGQMIC   80 (448)
Q Consensus         4 ~g~~t~ggT~an~~al~~a~~~~~~~~~~~G~~~~~~~~Vl~~~~~H~s~~~~~~~~-g~~~~~v~~v~~~~--~g~id~   80 (448)
                      ..++|+|+|+++..++.+..+              |++.|+++...|..+...++.. |+   +++.++.++  +..+|+
T Consensus       111 ~I~it~G~~~al~~~~~~l~~--------------pGd~Vlv~~P~y~~~~~~~~~~~g~---~~v~v~~~~~~~~~l~~  173 (431)
T d1m7ya_         111 HLVLTAGATSANETFIFCLAD--------------PGEAVLIPTPYYPGFDRDLKWRTGV---EIVPIHCTSSNGFQITE  173 (431)
T ss_dssp             GEEEEEHHHHHHHHHHHHHCC--------------TTCEEEEEESCCTTHHHHTTTTTCC---EEEEEECCGGGTSCCCH
T ss_pred             eEEECCCHHHHHHHHHHHhcC--------------CCCEEEEeCCCchhHHHHHHHhcCc---eeccccccchhcccccH
Confidence            568899999998888776543              6778999988988888887643 55   677888765  357999


Q ss_pred             HHHHHHHHHhhhcCCCcEEEEEeccCCccccccC---HHHHHHHHHHcCCEEEEecccccccccccchhhh---hcCC--
Q psy14299         81 SFLEQTIQTSLAEKKIPLFVNATAGTTVLGAFDP---LDEIATVCEKYDLWMHVDACWGGSLIFSEKYSFV---LKGI--  152 (448)
Q Consensus        81 e~Le~~l~~~~~~~~~~~lVv~~~~~t~tG~~~~---l~~I~~ia~~~g~~l~VD~A~~~~~~~~~~~~~~---~~~~--  152 (448)
                      +.+++.+.+....+.++++++++.++|+||...+   +++|.++|++||+++++|++|+...+..+.....   ....  
T Consensus       174 ~~~~~~~~~~~~~~~~~~~i~~~nP~NPtG~~~s~~~l~~i~~~a~~~~~~vI~De~Y~~~~~~~~~~~s~~~~~~~~~~  253 (431)
T d1m7ya_         174 TALEEAYQEAEKRNLRVKGVLVTNPSNPLGTTMTRNELYLLLSFVEDKGIHLISDEIYSGTAFSSPSFISVMEVLKDRNC  253 (431)
T ss_dssp             HHHHHHHHHHHHTTCCEEEEEEESSCTTTCCCCCHHHHHHHHHHHHHHTCEEEEECTTGGGCCSSSCCCCHHHHTTTTTC
T ss_pred             HHhhhhhhhhhhccCcceEEEecCccccccccccccccccccccccccCcceeecccccccccCCCCCCCHHHHhhhccc
Confidence            9999999887777788999999999999998766   7888999999999999999998654321110000   0000  


Q ss_pred             ----CC--ccEEEECCccccCCC-CceEEEEEeccchhhhhccCCcccccccCcccccccCCCCCcccCCCCchhHHHHH
Q psy14299        153 ----NR--ANSVSWNPHKMLGAP-LQCSILLIKEKGLLHQANATAATYLFQQDKFYDVSFDTGDKSVQCGRKVDAFKLWL  225 (448)
Q Consensus       153 ----~~--aD~~~~s~hK~l~~P-~g~G~l~vr~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  225 (448)
                          ..  --++..+..|.++.| .-+|+++..++ .+.........+... .                  .  ... ..
T Consensus       254 ~~~~~~~~~vi~~~s~SK~~~~~G~RiG~~~~~~~-~i~~~~~~~~~~~~~-~------------------~--~~~-~~  310 (431)
T d1m7ya_         254 DENSEVWQRVHVVYSLSKDLGLPGFRVGAIYSNDD-MVVAAATKMSSFGLV-S------------------S--QTQ-HL  310 (431)
T ss_dssp             SSSSSGGGGEEEEEESSSSSCCGGGCEEEEEESCH-HHHHHHHHHGGGSCC-C------------------H--HHH-HH
T ss_pred             ccccccCceEEEEecCcccccCCCCccceeccchh-hhHHHHHHHhccccc-c------------------c--ccc-ch
Confidence                00  115566899998866 34777666443 332221111111000 0                  0  000 00


Q ss_pred             HHHHh-ChHHHHHHHHHhhhhccCCCccchhhhhhhhhhhhhhhhhhhhhhhccccccccccCCCCCccccccchhhHHH
Q psy14299        226 MWKAR-GNLGFRHFVDNAVDCSRGSMTFSTLLCFDLQGLLHQANATAATYLFQQDKFYDVSFDTGDKSVQCGRKVDAFKL  304 (448)
Q Consensus       226 ~~~~~-g~~g~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  304 (448)
                      ....+ .....                                                                     
T Consensus       311 ~~a~l~~~~~~---------------------------------------------------------------------  321 (431)
T d1m7ya_         311 LSAMLSDKKLT---------------------------------------------------------------------  321 (431)
T ss_dssp             HHHHHHCHHHH---------------------------------------------------------------------
T ss_pred             hhhhhccchhh---------------------------------------------------------------------
Confidence            00000 00000                                                                     


Q ss_pred             HHHHHHhcCccHHHHHHHHHHHHHHHHHHhhcCCCeEEeccCCceeeEEEEeeccCCCccccchhhhhhhhhhhHHHHHH
Q psy14299        305 WLMWKARGNLGFRHFVDNAVDCSRYFLSQISQRPGFRLVIPEFQCTNICFWFIPVSLRDKVEDETWWSTLSKVAPRIKEK  384 (448)
Q Consensus       305 ~~~~~~~~~~G~~~~~~~~~~l~~~~~~~L~~~pg~~l~~~~~~~~~v~f~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~  384 (448)
                              ...+++..++..+..+.+.+.|++. |+++.  +|..+.++|.-.+..+...    .     .....++.++
T Consensus       322 --------~~~~~~~~~~~~~~~~~l~~~L~~~-gi~~~--~p~gg~f~w~~l~~~~~~~----~-----~~~~~~l~~~  381 (431)
T d1m7ya_         322 --------KNYIAENHKRLKQRQKKLVSGLQKS-GISCL--NGNAGLFCWVDMRHLLRSN----T-----FEAEMELWKK  381 (431)
T ss_dssp             --------HHHHHHHHHHHHHHHHHHHHHHHTT-TCEEC--CCCSSSEEEEECGGGSSSS----S-----HHHHHHHHHH
T ss_pred             --------hhhhhhhhhhhhhhhhhhhhhhhcC-CcEEe--cCCceeEEEEECccccccC----c-----ccCHHHHHHH
Confidence                    1123345556667778888889875 99985  5666666653323222211    0     0012367777


Q ss_pred             HHhCCcEEEEeeecCCcccccEEEEEecCCCCCCHHHHHHHHHHHHHHHHHh
Q psy14299        385 LVLGGTLMIGYQPLQHRNLHNFFRLVTTCHPASSRQDMDYAIDQIELRGAEV  436 (448)
Q Consensus       385 L~~~g~~~~~~~~~~g~~~~~~lRis~~~~~~~t~edid~l~~al~~~~~~~  436 (448)
                      |+++..+.+.|+...+...++++|+|+.   ..++++++..++.|+++.++.
T Consensus       382 ll~~~gV~v~PG~~F~~~~~~~~Ri~~a---~~~e~~l~~al~rL~~~l~~~  430 (431)
T d1m7ya_         382 IVYEVHLNISPGSSCHCTEPGWFRVCFA---NLPERTLDLAMQRLKAFVGEY  430 (431)
T ss_dssp             HHHTSCEECEEGGGGTCSSTTEEEEECS---SSCHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHCCEEEEeccccCCCCCCEEEEEeC---cCCHHHHHHHHHHHHHHHHHh
Confidence            7765336666665544434589999984   346778888888888877653

>d1svva_ c.67.1.1 (A:) Low-specificity threonine aldolase {Leishmania major [TaxId: 5664]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: AAT-like
domain: Low-specificity threonine aldolase
species: Leishmania major [TaxId: 5664]

Probab=99.73  E-value=5.1e-17  Score=154.15  Aligned_cols=284  Identities=14%  Similarity=0.089  Sum_probs=171.0

Q ss_pred             ccEEEeCcHHHHHHHHHHHHHHhcCCcccccCCCCCCCeEEEecCCCchHHHHHHHHhCCCCCcEEEEecCCCCCcCHHH
Q psy14299          3 LKPFLLPGGSISNMYSICLARYRLDPDTKRKGLSHLPPLCMFTSEDSHYSMLKAAHWLGIGMDNVIRVKTNERGQMICSF   82 (448)
Q Consensus         3 ~~g~~t~ggT~an~~al~~a~~~~~~~~~~~G~~~~~~~~Vl~~~~~H~s~~~~~~~~g~~~~~v~~v~~~~~g~id~e~   82 (448)
                      ..++||+|||++|++++.....              ++..++.+...|.+........+.+. ....++ ......+.+.
T Consensus        53 ~~v~~tsggtean~~a~~~~~~--------------~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~-~~~~~~~~~~  116 (340)
T d1svva_          53 ADVHFISGGTQTNLIACSLALR--------------PWEAVIATQLGHISTHETGAIEATGH-KVVTAP-CPDGKLRVAD  116 (340)
T ss_dssp             SEEEEESCHHHHHHHHHHHHCC--------------TTEEEEEETTSHHHHSSTTHHHHTTC-CEEEEC-CTTSCCCHHH
T ss_pred             ceEEEcCCHHHHHHHHHHHHhh--------------hccccccccccceeeeecccccccce-eeeecc-cccccccchh
Confidence            3689999999999999877555              45667788889988876555444432 222333 2344556666


Q ss_pred             HHHHHHHhhhcCCCcEEEEEeccCCccccc---cCHHHHHHHHHHcCCEEEEecccccccccccchhhhhcC-CCCccEE
Q psy14299         83 LEQTIQTSLAEKKIPLFVNATAGTTVLGAF---DPLDEIATVCEKYDLWMHVDACWGGSLIFSEKYSFVLKG-INRANSV  158 (448)
Q Consensus        83 Le~~l~~~~~~~~~~~lVv~~~~~t~tG~~---~~l~~I~~ia~~~g~~l~VD~A~~~~~~~~~~~~~~~~~-~~~aD~~  158 (448)
                      ..+...........+..+++....++.|.+   +++..+.++|+++|.++|+|.+++.+....+........ ....+..
T Consensus       117 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~d~a~~~~~~~~~~~~~~~~~~~~~~~~~  196 (340)
T d1svva_         117 IESALHENRSEHMVIPKLVYISNTTEVGTQYTKQELEDISASCKEHGLYLFLDGARLASALSSPVNDLTLADIARLTDMF  196 (340)
T ss_dssp             HHHHHHHSCSTTSCEEEEEEEESSCTTSCCCCHHHHHHHHHHHHHHTCEEEEECTTHHHHHTSTTCCCCHHHHHHHCSEE
T ss_pred             HHHHhhhhhcccCCcceeeeecccccccccccHHHhhhhhcccccccceeeeeccceeeeecccccccccccccccceee
Confidence            666665543333344555555555556655   456777899999999999999998766543321111000 0023566


Q ss_pred             EECCccccCCCCceEEEEEeccchhhhhccCCcccccccCcccccccCCCCCcccCCCCchhHHHHHHHHHhChHHHHHH
Q psy14299        159 SWNPHKMLGAPLQCSILLIKEKGLLHQANATAATYLFQQDKFYDVSFDTGDKSVQCGRKVDAFKLWLMWKARGNLGFRHF  238 (448)
Q Consensus       159 ~~s~hK~l~~P~g~G~l~vr~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~g~~~~  238 (448)
                      ..+..|..+.+.  +.+....................                   +..                     
T Consensus       197 ~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~-------------------~~~---------------------  234 (340)
T d1svva_         197 YIGATKAGGMFG--EALIILNDALKPNARHLIKQRGA-------------------LMA---------------------  234 (340)
T ss_dssp             EEECTTTTCSSC--EEEEECSGGGCTTHHHHHHHTTC-------------------CCT---------------------
T ss_pred             ecCCcccccccc--ccccccchhhhhhhhhhcccccC-------------------ccc---------------------
Confidence            777777665443  22223222211111000000000                   000                     


Q ss_pred             HHHhhhhccCCCccchhhhhhhhhhhhhhhhhhhhhhhccccccccccCCCCCccccccchhhHHHHHHHHHhcCccHHH
Q psy14299        239 VDNAVDCSRGSMTFSTLLCFDLQGLLHQANATAATYLFQQDKFYDVSFDTGDKSVQCGRKVDAFKLWLMWKARGNLGFRH  318 (448)
Q Consensus       239 i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~  318 (448)
                                                                                  ........+.......+.+.
T Consensus       235 ------------------------------------------------------------~~~~~~aa~~~~~~~~~~~~  254 (340)
T d1svva_         235 ------------------------------------------------------------KGWLLGIQFEVLMKDNLFFE  254 (340)
T ss_dssp             ------------------------------------------------------------TTHHHHHHHHHHTSTTHHHH
T ss_pred             ------------------------------------------------------------hhhHHHHHHHHHhhhhHHHH
Confidence                                                                        00011112222344556667


Q ss_pred             HHHHHHHHHHHHHHHhhcCCCeEEeccCCceeeEEEEeeccCCCccccchhhhhhhhhhhHHHHHHHHhCCcEEEEeeec
Q psy14299        319 FVDNAVDCSRYFLSQISQRPGFRLVIPEFQCTNICFWFIPVSLRDKVEDETWWSTLSKVAPRIKEKLVLGGTLMIGYQPL  398 (448)
Q Consensus       319 ~~~~~~~l~~~~~~~L~~~pg~~l~~~~~~~~~v~f~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~L~~~g~~~~~~~~~  398 (448)
                      ..++...++.++.+.+++. |++++ .++..+++.+.+.                     ....+.|.+++.+...+...
T Consensus       255 ~~~~~~~~~~~~~~~l~~~-g~~~~-~p~~~~~v~~~~~---------------------~~~~~~l~~~~~~~~~~~~~  311 (340)
T d1svva_         255 LGAHSNKMAAILKAGLEAC-GIRLA-WPSASNQLFPILE---------------------NTMIAELNNDFDMYTVEPLK  311 (340)
T ss_dssp             HHHHHHHHHHHHHHHHHHT-TCCBS-SCCSSSEECBEEE---------------------HHHHHHHTTTEECEEEEEET
T ss_pred             HHHHHHHHHhhhHHHHhcC-CCeee-cCCCceEEEEeCC---------------------HHHHHHHHHhhhhhcccccC
Confidence            7788888999999999986 99986 5666665544331                     14566777777544445555


Q ss_pred             CCcccccEEEEEecCCCCCCHHHHHHHHHHHHHH
Q psy14299        399 QHRNLHNFFRLVTTCHPASSRQDMDYAIDQIELR  432 (448)
Q Consensus       399 ~g~~~~~~lRis~~~~~~~t~edid~l~~al~~~  432 (448)
                      .+.   +++|+|+  |+++|+||||+++++|+++
T Consensus       312 ~~~---~~vR~s~--~~~~t~edid~~l~~l~~l  340 (340)
T d1svva_         312 DGT---CIMRLCT--SWATEEKECHRFVEVLKRL  340 (340)
T ss_dssp             TTE---EEEEEEC--CTTCCHHHHHHHHHHHHHC
T ss_pred             CCC---cEEEEEC--CCCCCHHHHHHHHHHHhcC
Confidence            555   8999998  8999999999999999874

>d1gdea_ c.67.1.1 (A:) Aromatic aminoacid aminotransferase, AroAT {Archaeon Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: AAT-like
domain: Aromatic aminoacid aminotransferase, AroAT
species: Archaeon Pyrococcus horikoshii [TaxId: 53953]

Probab=99.73  E-value=1.5e-16  Score=158.00  Aligned_cols=153  Identities=14%  Similarity=0.071  Sum_probs=115.5

Q ss_pred             cEEEeCcHHHHHHHHHHHHHHhcCCcccccCCCCCCCeEEEecCCCchHHHHHHHHhCCCCCcEEEEecCC--CCCcCHH
Q psy14299          4 KPFLLPGGSISNMYSICLARYRLDPDTKRKGLSHLPPLCMFTSEDSHYSMLKAAHWLGIGMDNVIRVKTNE--RGQMICS   81 (448)
Q Consensus         4 ~g~~t~ggT~an~~al~~a~~~~~~~~~~~G~~~~~~~~Vl~~~~~H~s~~~~~~~~g~~~~~v~~v~~~~--~g~id~e   81 (448)
                      ..++|+|+++++.+++.+...              +++.|+++...|..+...++..|.   +++.+|.++  ++.+|++
T Consensus        88 ~i~~t~G~~~~l~~~~~~l~~--------------~gd~vlv~~P~y~~~~~~~~~~g~---~~~~~~~~~~~~~~~d~~  150 (388)
T d1gdea_          88 EIMVLLGANQAFLMGLSAFLK--------------DGEEVLIPTPAFVSYAPAVILAGG---KPVEVPTYEEDEFRLNVD  150 (388)
T ss_dssp             SEEEESSTTHHHHHHHTTTCC--------------TTCEEEEEESCCTTHHHHHHHHTC---EEEEEECCGGGTTCCCHH
T ss_pred             eeeeccCcchHHHHHHHHhcC--------------CCCEEEECCCCcHHHHHHHHHcCC---EEEEeecccccCCCCCHH
Confidence            478899999998887665443              677899999999999999999999   788998864  4589999


Q ss_pred             HHHHHHHHhhhcCCCcEEEEEeccCCccccccC---HHHHHHHHHHcCCEEEEecccccccccccchhhh--hcCCCCcc
Q psy14299         82 FLEQTIQTSLAEKKIPLFVNATAGTTVLGAFDP---LDEIATVCEKYDLWMHVDACWGGSLIFSEKYSFV--LKGINRAN  156 (448)
Q Consensus        82 ~Le~~l~~~~~~~~~~~lVv~~~~~t~tG~~~~---l~~I~~ia~~~g~~l~VD~A~~~~~~~~~~~~~~--~~~~~~aD  156 (448)
                      +|++.+.+      ++++++++.++|+||.+.+   +++|+++|++||+++++|++|+............  ......-.
T Consensus       151 ~l~~~~~~------~~~~i~~~~P~NPtG~~~s~~~~~~l~~~a~~~~~~vi~De~y~~~~~~~~~~~~~~~~~~~~~~~  224 (388)
T d1gdea_         151 ELKKYVTD------KTRALIINSPCNPTGAVLTKKDLEEIADFVVEHDLIVISDEVYEHFIYDDARHYSIASLDGMFERT  224 (388)
T ss_dssp             HHHHHCCT------TEEEEEEESSCTTTCCCCCHHHHHHHHHHHHHTTCEEEEECTTTTCBCTTCCCCCGGGSTTCGGGE
T ss_pred             HHHHhCcc------CCeEEEECCCcCCCCCcCCHHHHHHHHHHHHHcCCEEEEEcCChhhhhccCCCCChhhccCCCCeE
Confidence            99998854      5789999999999998855   7888899999999999999998654322111110  11111123


Q ss_pred             EEEECCccccCCC-CceEEEEEec
Q psy14299        157 SVSWNPHKMLGAP-LQCSILLIKE  179 (448)
Q Consensus       157 ~~~~s~hK~l~~P-~g~G~l~vr~  179 (448)
                      ++..|+.|.++.| .-+|+++..+
T Consensus       225 i~~~S~SK~~~~~GlR~G~ii~~~  248 (388)
T d1gdea_         225 ITVNGFSKTFAMTGWRLGFVAAPS  248 (388)
T ss_dssp             EEEEESTTTTTCGGGCCEEEECCH
T ss_pred             EEEeCChhhccCccccEEEEEeec
Confidence            6677899988766 4577766644

>d1v2da_ c.67.1.1 (A:) Glutamine aminotransferase {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: AAT-like
domain: Glutamine aminotransferase
species: Thermus thermophilus [TaxId: 274]

Probab=99.70  E-value=6.5e-16  Score=152.32  Aligned_cols=150  Identities=14%  Similarity=0.007  Sum_probs=109.9

Q ss_pred             cEEEeCcHHHHHHHHHHHHHHhcCCcccccCCCCCCCeEEEecCCCchHHHHHHHHhCCCCCcEEEEecC---CCCCcCH
Q psy14299          4 KPFLLPGGSISNMYSICLARYRLDPDTKRKGLSHLPPLCMFTSEDSHYSMLKAAHWLGIGMDNVIRVKTN---ERGQMIC   80 (448)
Q Consensus         4 ~g~~t~ggT~an~~al~~a~~~~~~~~~~~G~~~~~~~~Vl~~~~~H~s~~~~~~~~g~~~~~v~~v~~~---~~g~id~   80 (448)
                      ..++|+|+|+++..++.+...              +++.|+++...|......++..|.   +++.++.+   .++.+|+
T Consensus        80 ~Iiit~G~~~al~~~~~~l~~--------------~~d~v~~~~p~~~~~~~~~~~~g~---~~~~~~~~~~~~~~~~d~  142 (368)
T d1v2da_          80 SVVVTSGATEALYVLLQSLVG--------------PGDEVVVLEPFFDVYLPDAFLAGA---KARLVRLDLTPEGFRLDL  142 (368)
T ss_dssp             GEEEESSHHHHHHHHHHHHCC--------------TTCEEEEEESCCTTHHHHHHHTTC---EEEEEECEEETTEEECCH
T ss_pred             ceeeccchHHHHHHHhhcccc--------------ccccccccCCcchhhhhHHHhcCC---ccceeccccccccccCCH
Confidence            479999999999888776544              566788888899999999999998   66666653   3468999


Q ss_pred             HHHHHHHHHhhhcCCCcEEEEEeccCCccccccC---HHHHHHHHHHcCCEEEEecccccccccccchhhhhcCCCCccE
Q psy14299         81 SFLEQTIQTSLAEKKIPLFVNATAGTTVLGAFDP---LDEIATVCEKYDLWMHVDACWGGSLIFSEKYSFVLKGINRANS  157 (448)
Q Consensus        81 e~Le~~l~~~~~~~~~~~lVv~~~~~t~tG~~~~---l~~I~~ia~~~g~~l~VD~A~~~~~~~~~~~~~~~~~~~~aD~  157 (448)
                      +.+++++.+      .+++++++.++|+||...+   +++|+++|++||+++++|++++......+........ .....
T Consensus       143 ~~l~~~~~~------~~~~i~~~~p~NPtG~~~~~~~l~~l~~~a~~~~i~ii~D~~~~~~~~~~~~~~~~~~~-~~~~~  215 (368)
T d1v2da_         143 SALEKALTP------RTRALLLNTPMNPTGLVFGERELEAIARLARAHDLFLISDEVYDELYYGERPRRLREFA-PERTF  215 (368)
T ss_dssp             HHHHTTCCT------TEEEEEEESSCTTTCCCCCHHHHHHHHHHHHHTTCEEEEECTTTTCBSSSCCCCHHHHC-TTTEE
T ss_pred             HHHHHhhcc------CceEEEEcCCCCcccccCCHHHHHHHHHHHHHcCCeeeechhhhhhccccccccccccc-ccccc
Confidence            999999865      4788999999999999876   7889999999999999999887654432221111111 11235


Q ss_pred             EEECCccccCCCCc-eEEEEE
Q psy14299        158 VSWNPHKMLGAPLQ-CSILLI  177 (448)
Q Consensus       158 ~~~s~hK~l~~P~g-~G~l~v  177 (448)
                      +..+..|..+.|.. +|++..
T Consensus       216 ~~~~~sk~~~~~G~R~g~~~~  236 (368)
T d1v2da_         216 TVGSAGKRLEATGYRVGWIVG  236 (368)
T ss_dssp             EEEEHHHHTTCGGGCCEEEEC
T ss_pred             eeecccccccccccccccccc
Confidence            55666666655533 555544

>d1vp4a_ c.67.1.1 (A:) Putative aminotransferase TM1131 {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: AAT-like
domain: Putative aminotransferase TM1131
species: Thermotoga maritima [TaxId: 2336]

Probab=99.69  E-value=1.7e-15  Score=152.03  Aligned_cols=162  Identities=14%  Similarity=0.073  Sum_probs=111.9

Q ss_pred             cEEEeCcHHHHHHHHHHHHHHhcCCcccccCCCCCCCeEEEecCCCchHHHHHHHHhCCCCCcEEEEecCCCCCcCHHHH
Q psy14299          4 KPFLLPGGSISNMYSICLARYRLDPDTKRKGLSHLPPLCMFTSEDSHYSMLKAAHWLGIGMDNVIRVKTNERGQMICSFL   83 (448)
Q Consensus         4 ~g~~t~ggT~an~~al~~a~~~~~~~~~~~G~~~~~~~~Vl~~~~~H~s~~~~~~~~g~~~~~v~~v~~~~~g~id~e~L   83 (448)
                      ..++|+|+++++.+++.+...              +++.|+++...+..+...++..|.   +++.+|.+++ .+|++.+
T Consensus       106 ~I~it~G~~~al~~~~~~~~~--------------~Gd~Vlv~~P~y~~~~~~~~~~g~---~~~~~~~~~~-~~~~~~l  167 (420)
T d1vp4a_         106 NLIFTVGSQQALDLIGKLFLD--------------DESYCVLDDPAYLGAINAFRQYLA---NFVVVPLEDD-GMDLNVL  167 (420)
T ss_dssp             GEEEEEHHHHHHHHHHHHHCC--------------TTCEEEEEESCCHHHHHHHHTTTC---EEEEEEEETT-EECHHHH
T ss_pred             HeEeccchhhhHHHHHHhhhc--------------cccccccccccccchhHHHHHHhh---hccccccccc-ccccchh
Confidence            368999999998877766443              677899999999999999998888   7889998654 5799999


Q ss_pred             HHHHHHhhhcC---CCcEEEEEeccCCcccccc---CHHHHHHHHHHcCCEEEEecccccccccccchhhh-hcCCCCcc
Q psy14299         84 EQTIQTSLAEK---KIPLFVNATAGTTVLGAFD---PLDEIATVCEKYDLWMHVDACWGGSLIFSEKYSFV-LKGINRAN  156 (448)
Q Consensus        84 e~~l~~~~~~~---~~~~lVv~~~~~t~tG~~~---~l~~I~~ia~~~g~~l~VD~A~~~~~~~~~~~~~~-~~~~~~aD  156 (448)
                      +..+.+.....   ....+++++.++|+||.+.   .+++|+++|++|++++++|.+|....+..+..... .......-
T Consensus       168 ~~~~~~~~~~~~~~~~~~~~~~~~p~NPtG~~~s~~~~~~i~~~a~~~~i~ii~De~y~~l~~~~~~~~~~~~~~~~~~~  247 (420)
T d1vp4a_         168 ERKLSEFDKNGKIKQVKFIYVVSNFHNPAGVTTSLEKRKALVEIAEKYDLFIVEDDPYGALRYEGETVDPIFKIGGPERV  247 (420)
T ss_dssp             HHHHHHHHHTTCGGGEEEEEEECSSCTTTCCCCCHHHHHHHHHHHHHTTCEEEEECSSTTCBCSSCCCCCHHHHHCTTTE
T ss_pred             hhhhhhhHHHhhccccceeeEecCCCCccchhhhhhhhhhhhhhhhcccccccccchhhhccccCcccccccccccccce
Confidence            88876533221   2234566778899999875   46889999999999999999987554322111100 00011123


Q ss_pred             EEEECCccccCCCCceEEEEEeccchhh
Q psy14299        157 SVSWNPHKMLGAPLQCSILLIKEKGLLH  184 (448)
Q Consensus       157 ~~~~s~hK~l~~P~g~G~l~vr~~~~~~  184 (448)
                      ++..++.|++..-.-+|+++. ++.++.
T Consensus       248 i~~~s~sk~~~~G~RiG~~~~-~~~~i~  274 (420)
T d1vp4a_         248 VLLNTFSKVLAPGLRIGMVAG-SKEFIR  274 (420)
T ss_dssp             EEEEESTTTTCGGGCEEEEEC-CHHHHH
T ss_pred             eEEeccccccccccccccccc-cchhhh
Confidence            556677887764456776655 444433

>d1bjna_ c.67.1.4 (A:) Phosphoserine aminotransferase, PSAT {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: GABA-aminotransferase-like
domain: Phosphoserine aminotransferase, PSAT
species: Escherichia coli [TaxId: 562]

Probab=99.68  E-value=3.7e-17  Score=159.61  Aligned_cols=291  Identities=10%  Similarity=-0.116  Sum_probs=178.9

Q ss_pred             cEEEeCcHHHHHHHHHHHHHHhcCCcccccCCCCCCCeEEEecCCCchHHHHHHHHhCCCCCcEEEEecCCCCCcCHHHH
Q psy14299          4 KPFLLPGGSISNMYSICLARYRLDPDTKRKGLSHLPPLCMFTSEDSHYSMLKAAHWLGIGMDNVIRVKTNERGQMICSFL   83 (448)
Q Consensus         4 ~g~~t~ggT~an~~al~~a~~~~~~~~~~~G~~~~~~~~Vl~~~~~H~s~~~~~~~~g~~~~~v~~v~~~~~g~id~e~L   83 (448)
                      ..+|++|++++++.+.......             +++.+++. ..|........+.......+..+..+.++..+.+.+
T Consensus        66 ~v~~~~gs~t~~~~a~~~~~~~-------------~~~~v~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  131 (360)
T d1bjna_          66 KVLFCHGGGRGQFAAVPLNILG-------------DKTTADYV-DAGYWAASAIKEAKKYCTPNVFDAKVTVDGLRAVKP  131 (360)
T ss_dssp             EEEEESSHHHHHHHHHHHHHCT-------------TCCEEEEE-ESSHHHHHHHHHHTTTSEEEEEECEEEETTEEEECC
T ss_pred             EEEEECCchHHHHhhhhhcccc-------------ccccccee-cccchhhhhHHHHhhcCccceeeccccCCCcchhhh
Confidence            5789999999977765544332             45555555 344443333333333222455555555666666666


Q ss_pred             HHHHHHhhhcCCCcEEEEEeccCCccccccCHHHHHHHHHHcCCEEEEecccccccccccchhhhhcCCCCccEEEECCc
Q psy14299         84 EQTIQTSLAEKKIPLFVNATAGTTVLGAFDPLDEIATVCEKYDLWMHVDACWGGSLIFSEKYSFVLKGINRANSVSWNPH  163 (448)
Q Consensus        84 e~~l~~~~~~~~~~~lVv~~~~~t~tG~~~~l~~I~~ia~~~g~~l~VD~A~~~~~~~~~~~~~~~~~~~~aD~~~~s~h  163 (448)
                      +..+.      .+++++++++.+|.||...|++++.  ++.+++.+++|++++.+...++.+        .+|+..+++|
T Consensus       132 ~~~~~------~~~~~v~v~~~~~~t~~~~~~~~i~--~~~~~~~v~vDa~~~~~~~~vd~~--------~~dv~~~ss~  195 (360)
T d1bjna_         132 MREWQ------LSDNAAYMHYCPNETIDGIAIDETP--DFGADVVVAADFSSTILSRPIDVS--------RYGVIYAGAQ  195 (360)
T ss_dssp             GGGCC------CCSSCSCEEECSEETTTTEECCCCC--CCCTTCCEEEECTTTTTSSCCCGG--------GCSEEEEETT
T ss_pred             hhhhc------cCCceeEEEecccccccCcccccee--cccccceeeeeeeccccceeeeec--------cceeEEEEcc
Confidence            55543      3577888888999999999988775  577899999999999998877654        3689999999


Q ss_pred             cccCCCCceEEEEEeccchhhhhccCCcccccccCcccccccCCCCCcccCCCCchhHHHHHHHHHhChHHHHHHHHHhh
Q psy14299        164 KMLGAPLQCSILLIKEKGLLHQANATAATYLFQQDKFYDVSFDTGDKSVQCGRKVDAFKLWLMWKARGNLGFRHFVDNAV  243 (448)
Q Consensus       164 K~l~~P~g~G~l~vr~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~g~~~~i~~~~  243 (448)
                      |++++|+|.++++.+++............+....       ......  .....                          
T Consensus       196 k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~--~~~~~--------------------------  240 (360)
T d1bjna_         196 KNIGPAGLTIVIVREDLLGKANIACPSILDYSIL-------NDNGSM--FNTPP--------------------------  240 (360)
T ss_dssp             TTTSSTTCEEEEEEGGGCSCCCTTSCGGGCHHHH-------HHTTTC--SSCCC--------------------------
T ss_pred             cccccCCCceeEeeehhhhhccccCCcchhhHHH-------Hhhhhh--ccccc--------------------------
Confidence            9999999999988866532211111000000000       000000  00000                          


Q ss_pred             hhccCCCccchhhhhhhhhhhhhhhhhhhhhhhccccccccccCCCCCccccccchhhHHHHHHHHHhcCccHHHHHHHH
Q psy14299        244 DCSRGSMTFSTLLCFDLQGLLHQANATAATYLFQQDKFYDVSFDTGDKSVQCGRKVDAFKLWLMWKARGNLGFRHFVDNA  323 (448)
Q Consensus       244 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~  323 (448)
                                                                           ..................+.+...++.
T Consensus       241 -----------------------------------------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~  267 (360)
T d1bjna_         241 -----------------------------------------------------TFAWYLSGLVFKWLKANGGVAEMDKIN  267 (360)
T ss_dssp             -----------------------------------------------------HHHHHHHHHHHHHHHHTTHHHHHHHHH
T ss_pred             -----------------------------------------------------cchHHHHHHHHHHHhhhhhHHHHHHHH
Confidence                                                                 011111122233445566777788888


Q ss_pred             HHHHHHHHHHhhcCCCeEEeccCC---ceeeEEEEeeccCCCccccchhhhhhhhhhhHHHHHHHHhCCcEEEEeeecCC
Q psy14299        324 VDCSRYFLSQISQRPGFRLVIPEF---QCTNICFWFIPVSLRDKVEDETWWSTLSKVAPRIKEKLVLGGTLMIGYQPLQH  400 (448)
Q Consensus       324 ~~l~~~~~~~L~~~pg~~l~~~~~---~~~~v~f~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~L~~~g~~~~~~~~~~g  400 (448)
                      .+.+.+....+......... ..+   ..++++|.+ |.+..               ...+.+.|.++|++...+  +..
T Consensus       268 ~~~~~~~~~~~~~~~~~~~~-~~~~~rs~~v~~f~~-~~~~~---------------~~~~~~~l~~~Gi~~~~G--~~~  328 (360)
T d1bjna_         268 QQKAELLYGVIDNSDFYRND-VAKRNRSRMNVPFQL-ADSAL---------------DKLFLEESFAAGLHALKG--HRV  328 (360)
T ss_dssp             HHHHHHHHHHHHHCSSEECC-BCGGGBCSSEEEEEE-SSGGG---------------HHHHHHHHHHTTEECCBC--CTT
T ss_pred             HHHHHHHHHhhhcccccccc-CCcccccceEEEEEc-CCccc---------------HHHHHHHHHHCCCEeecC--CCc
Confidence            88888888888887444433 222   235677765 32221               237888899999432221  111


Q ss_pred             cccccEEEEEecCCCCCCHHHHHHHHHHHHHHHHHh
Q psy14299        401 RNLHNFFRLVTTCHPASSRQDMDYAIDQIELRGAEV  436 (448)
Q Consensus       401 ~~~~~~lRis~~~~~~~t~edid~l~~al~~~~~~~  436 (448)
                      .   +.+|+|+  ..++|+|||++|+++|+++.++.
T Consensus       329 ~---g~~Ris~--~~~~t~edV~~li~~l~e~~~~~  359 (360)
T d1bjna_         329 V---GGMRASI--YNAMPLEGVKALTDFMVEFERRH  359 (360)
T ss_dssp             T---CSEEEEC--CTTSCHHHHHHHHHHHHHHHHHH
T ss_pred             c---CeEEEEe--cCCCCHHHHHHHHHHHHHHHHHc
Confidence            1   3499999  57999999999999999987653

>d1xi9a_ c.67.1.1 (A:) Putative alanine aminotransferase {Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: AAT-like
domain: Putative alanine aminotransferase
species: Pyrococcus furiosus [TaxId: 2261]

Probab=99.68  E-value=3.3e-15  Score=149.02  Aligned_cols=290  Identities=13%  Similarity=0.037  Sum_probs=183.2

Q ss_pred             cEEEeCcHHHHHHHHHHHHHHhcCCcccccCCCCCCCeEEEecCCCchHHHHHHHHhCCCCCcEEEEecC--CCCCcCHH
Q psy14299          4 KPFLLPGGSISNMYSICLARYRLDPDTKRKGLSHLPPLCMFTSEDSHYSMLKAAHWLGIGMDNVIRVKTN--ERGQMICS   81 (448)
Q Consensus         4 ~g~~t~ggT~an~~al~~a~~~~~~~~~~~G~~~~~~~~Vl~~~~~H~s~~~~~~~~g~~~~~v~~v~~~--~~g~id~e   81 (448)
                      ..++|+|+++++.+++.+...              +++.|+++...+..+...++..|.   +++.++..  .++.+|++
T Consensus        95 ~i~i~~G~~~~~~~~~~~~~~--------------~Gd~vlv~~P~y~~~~~~~~~~g~---~~v~v~~~~~~~~~~d~~  157 (395)
T d1xi9a_          95 DVRVTAAVTEALQLIFGALLD--------------PGDEILVPGPSYPPYTGLVKFYGG---KPVEYRTIEEEDWQPDID  157 (395)
T ss_dssp             GEEEESHHHHHHHHHHHHHCC--------------TTCEEEEEESCCHHHHHHHHHTTC---EEEEEEEEGGGTSEECHH
T ss_pred             ccccccccchhhhhhhhhhcC--------------CCCEEEEcCCccccchhhhhhcCC---EEEEEeccccccccchHH
Confidence            467899999998777665544              567788899999999999999998   67777754  35689999


Q ss_pred             HHHHHHHHhhhcCCCcEEEEEeccCCccccccC---HHHHHHHHHHcCCEEEEecccccccccccchhh-hhcCCCCcc-
Q psy14299         82 FLEQTIQTSLAEKKIPLFVNATAGTTVLGAFDP---LDEIATVCEKYDLWMHVDACWGGSLIFSEKYSF-VLKGINRAN-  156 (448)
Q Consensus        82 ~Le~~l~~~~~~~~~~~lVv~~~~~t~tG~~~~---l~~I~~ia~~~g~~l~VD~A~~~~~~~~~~~~~-~~~~~~~aD-  156 (448)
                      ++++.+.+      ++++++++.++|+||.+.+   +++|+++|++||++++.|.++............ ....  ... 
T Consensus       158 ~~~~~~~~------~~~~v~l~~P~NPTG~~~s~~~~~~l~~~~~~~~~~ii~De~y~~~~~~~~~~~~~~~~~--~~~v  229 (395)
T d1xi9a_         158 DIRKKITD------RTKAIAVINPNNPTGALYDKKTLEEILNIAGEYEIPVISDEIYDLMTYEGEHISPGSLTK--DVPV  229 (395)
T ss_dssp             HHHHHCCT------TEEEEEEESSCTTTCCCCCHHHHHHHHHHHHHHTCCEEEECTTTTCBSSSCCCCHHHHCS--SSCE
T ss_pred             HHHHhhcc------cccEEEecCCCCCccchhhHHHHHHHHhhhhhcCeeEEeccccccccccccccchhhcCC--CCCE
Confidence            99998854      5789999999999998866   678889999999999999998765442211111 1111  112 


Q ss_pred             EEEECCccccCCCC-ceEEEEEeccc-hhhhhccCCcccccccCcccccccCCCCCcccCCCCchhHHHHHHHHHhChHH
Q psy14299        157 SVSWNPHKMLGAPL-QCSILLIKEKG-LLHQANATAATYLFQQDKFYDVSFDTGDKSVQCGRKVDAFKLWLMWKARGNLG  234 (448)
Q Consensus       157 ~~~~s~hK~l~~P~-g~G~l~vr~~~-~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~g  234 (448)
                      ++..|+.|.++.|. -+|++++.... .+..... ....+..                                      
T Consensus       230 i~~~S~SK~~~~~GlRvG~~~~~~~~~~~~~~~~-~~~~~~~--------------------------------------  270 (395)
T d1xi9a_         230 IVMNGLSKVYFATGWRLGYMYFVDPENKLSEVRE-AIDRLAR--------------------------------------  270 (395)
T ss_dssp             EEEEESTTTTCCGGGCCEEEEEECTTCTTHHHHH-HHHHHHH--------------------------------------
T ss_pred             EEEeCcchhcccchhhcEeeEecCHHHHHHHHHH-HHHHhhc--------------------------------------
Confidence            45568999887662 26766554322 1111000 0000000                                      


Q ss_pred             HHHHHHHhhhhccCCCccchhhhhhhhhhhhhhhhhhhhhhhccccccccccCCCCCccccccchhhHHHHHHHHHhcCc
Q psy14299        235 FRHFVDNAVDCSRGSMTFSTLLCFDLQGLLHQANATAATYLFQQDKFYDVSFDTGDKSVQCGRKVDAFKLWLMWKARGNL  314 (448)
Q Consensus       235 ~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  314 (448)
                                                                               ...|.+.+.+.++..+++ -+.+
T Consensus       271 ---------------------------------------------------------~~~~~~~~~q~a~~~~l~-~~~~  292 (395)
T d1xi9a_         271 ---------------------------------------------------------IRLCPNTPAQFAAIAGLT-GPMD  292 (395)
T ss_dssp             ---------------------------------------------------------HTCCSCSHHHHHHHHHHH-SCCH
T ss_pred             ---------------------------------------------------------CCCCcCHHHHHHHHHHhc-CCHH
Confidence                                                                     000111222233233333 1345


Q ss_pred             cHHHHHHHHHHHHHHHHHHhhcCCCeEEeccCCceeeEEEEeeccCCCccccchhhhhhhhhhhHHHHHHHH-hCCcEEE
Q psy14299        315 GFRHFVDNAVDCSRYFLSQISQRPGFRLVIPEFQCTNICFWFIPVSLRDKVEDETWWSTLSKVAPRIKEKLV-LGGTLMI  393 (448)
Q Consensus       315 G~~~~~~~~~~l~~~~~~~L~~~pg~~l~~~~~~~~~v~f~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~L~-~~g~~~~  393 (448)
                      .++++.+...+.++++.+.|.+++++.+  .+|..+.+.|.-.+.....             ...++...|+ +.| +++
T Consensus       293 ~~~~~~~~~~~~~~~l~~~L~~~~~~~~--~~p~gg~~~~~~l~~~~~~-------------~~~~~~~~ll~~~g-V~v  356 (395)
T d1xi9a_         293 YLKEYMKKLKERRDYIYKRLNEIPGIST--TKPQGAFYIFPKIEVGPWK-------------NDKEFVLDVLHNAH-VLF  356 (395)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHTSTTEEC--CCCCBSSEECCEECSCSCS-------------SHHHHHHHHHHHHC-EEC
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhCCCcee--cCCCeeEEEeEECCCCCCC-------------CHHHHHHHHHHhCC-EEE
Confidence            6777788888899999999999977775  4566666655322211100             0124555555 557 556


Q ss_pred             EeeecCCcccccEEEEEecCCCCCCHHHHHHHHHHHHHHHHH
Q psy14299        394 GYQPLQHRNLHNFFRLVTTCHPASSRQDMDYAIDQIELRGAE  435 (448)
Q Consensus       394 ~~~~~~g~~~~~~lRis~~~~~~~t~edid~l~~al~~~~~~  435 (448)
                      .|+...|....+++||+++    +++|+++..++.|+++.++
T Consensus       357 ~PG~~Fg~~~~~~~Ris~~----~~~e~l~eal~rl~~~l~e  394 (395)
T d1xi9a_         357 VHGSGFGEYGAGHFRAVFL----PPIEILEEAMDRFEKFMKE  394 (395)
T ss_dssp             EEGGGGCGGGTTBEEEECC----SCHHHHHHHHHHHHHHHHH
T ss_pred             EcChhhCCCCCCEEEEEec----CCHHHHHHHHHHHHHHHhc
Confidence            6655555444589999984    4677787777777776653

>d2aeua1 c.67.1.8 (A:9-374) Hypothetical protein MJ0158 {Archaeon Methanococcus jannaschii [TaxId: 2190]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: SelA-like
domain: Hypothetical protein MJ0158
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

Probab=99.67  E-value=2.4e-16  Score=155.89  Aligned_cols=148  Identities=13%  Similarity=0.122  Sum_probs=110.2

Q ss_pred             cEEEeCcHHHHHHHHHHHHHHhcCCcccccCCCCCCCeEEEec-CCCchHHHHHHHHhCCCCCcEEEEecCCCCCcCHHH
Q psy14299          4 KPFLLPGGSISNMYSICLARYRLDPDTKRKGLSHLPPLCMFTS-EDSHYSMLKAAHWLGIGMDNVIRVKTNERGQMICSF   82 (448)
Q Consensus         4 ~g~~t~ggT~an~~al~~a~~~~~~~~~~~G~~~~~~~~Vl~~-~~~H~s~~~~~~~~g~~~~~v~~v~~~~~g~id~e~   82 (448)
                      ..++|+||+++++.++.+ ..+             ++++|+++ ...|.++..++++.|.   ++  ++.+     |+++
T Consensus        70 ~~~~~~~~~~a~~~~l~a-l~~-------------~~~vi~~~~~~~~~~~~~~~~l~g~---~~--v~~~-----d~e~  125 (366)
T d2aeua1          70 KCVGFNRTSSAILATILA-LKP-------------KKVIHYLPELPGHPSIERSCKIVNA---KY--FESD-----KVGE  125 (366)
T ss_dssp             EEEEESSHHHHHHHHHHH-HCC-------------SEEEEECSSSSCCTHHHHHHHHTTC---EE--EEES-----CHHH
T ss_pred             EEEEeCCHHHHHHHHHHH-hCC-------------CCEEEEecCCCcchhHHHHHHhcCC---eE--ECCC-----CHHH
Confidence            468899999999888765 332             45555555 5789999999999988   44  4444     8899


Q ss_pred             HHHHHHHhhhcCCCcEEEEEeccCCc-cccccCHHHHHHHHHHcCCEEEEecccccccccccchhhhhcCCCCccEEEEC
Q psy14299         83 LEQTIQTSLAEKKIPLFVNATAGTTV-LGAFDPLDEIATVCEKYDLWMHVDACWGGSLIFSEKYSFVLKGINRANSVSWN  161 (448)
Q Consensus        83 Le~~l~~~~~~~~~~~lVv~~~~~t~-tG~~~~l~~I~~ia~~~g~~l~VD~A~~~~~~~~~~~~~~~~~~~~aD~~~~s  161 (448)
                      |++++.+      ++++|++++++|+ ++.+.|+++|+++|++||+++++|++|+.+.+.....+....  ..+|++++|
T Consensus       126 l~~~i~~------~tk~i~~~~p~n~~~~~~~~l~~i~~ia~~~~~~~i~De~y~~~~~~~~~~~~~~~--~~~di~~~S  197 (366)
T d2aeua1         126 ILNKIDK------DTLVIITGSTMDLKVIELENFKKVINTAKNKEAIVFVDDASGARVRLLFNQPPALK--LGADLVVTS  197 (366)
T ss_dssp             HHTTCCT------TEEEEEECBCTTSCBCCHHHHHHHHHHHHHHTCCEEEECTTHHHHHHHTTCCCHHH--HTCSEEEEE
T ss_pred             HHHhcCC------CceEEEEEecCCCCcCCHHHHHHHHHHhccCcEEEEEecCccccccccccCCCHhh--cCceEEEec
Confidence            9988865      5889999998775 457889999999999999999999999876553221111111  147999999


Q ss_pred             CccccCCCCceEEEEEeccchhhh
Q psy14299        162 PHKMLGAPLQCSILLIKEKGLLHQ  185 (448)
Q Consensus       162 ~hK~l~~P~g~G~l~vr~~~~~~~  185 (448)
                      .||.+++| ..|+++.++ ++...
T Consensus       198 ~sK~~~g~-~~G~i~~~~-~~i~~  219 (366)
T d2aeua1         198 TDKLMEGP-RGGLLAGKK-ELVDK  219 (366)
T ss_dssp             TTSSSSSC-SCEEEEEEH-HHHHH
T ss_pred             cccccccc-ceeEEEecH-HHHHH
Confidence            99998876 578777755 44443

>d1b5pa_ c.67.1.1 (A:) Aspartate aminotransferase, AAT {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: AAT-like
domain: Aspartate aminotransferase, AAT
species: Thermus thermophilus [TaxId: 274]

Probab=99.67  E-value=2.2e-15  Score=149.53  Aligned_cols=152  Identities=14%  Similarity=0.040  Sum_probs=113.9

Q ss_pred             cEEEeCcHHHHHHHHHHHHHHhcCCcccccCCCCCCCeEEEecCCCchHHHHHHHHhCCCCCcEEEEecCC--CCCcCHH
Q psy14299          4 KPFLLPGGSISNMYSICLARYRLDPDTKRKGLSHLPPLCMFTSEDSHYSMLKAAHWLGIGMDNVIRVKTNE--RGQMICS   81 (448)
Q Consensus         4 ~g~~t~ggT~an~~al~~a~~~~~~~~~~~G~~~~~~~~Vl~~~~~H~s~~~~~~~~g~~~~~v~~v~~~~--~g~id~e   81 (448)
                      ..++|+|+++++..++.+..+              +++.|+++...+..+...++..|.   +++.+|.++  +..+|++
T Consensus        93 ~i~it~G~~~al~~~~~~l~~--------------~gd~vl~~~P~y~~~~~~~~~~g~---~~~~v~~~~~~~~~~d~~  155 (382)
T d1b5pa_          93 ETIVTVGGSQALFNLFQAILD--------------PGDEVIVLSPYWVSYPEMVRFAGG---VVVEVETLPEEGFVPDPE  155 (382)
T ss_dssp             GEEEESHHHHHHHHHHHHHCC--------------TTCEEEEEESCCTHHHHHHHHTTC---EEEEEECCGGGTTCCCHH
T ss_pred             cceecCCHHHHHHHHHHHhCC--------------CCCEEEECCCCcHHHHHHHHHhcC---eEEEEecccccccCCCHH
Confidence            578899999998887776544              567788898899999999999998   788888754  4588999


Q ss_pred             HHHHHHHHhhhcCCCcEEEEEeccCCccccccC---HHHHHHHHHHcCCEEEEecccccccccccchhhhhcCCCCccEE
Q psy14299         82 FLEQTIQTSLAEKKIPLFVNATAGTTVLGAFDP---LDEIATVCEKYDLWMHVDACWGGSLIFSEKYSFVLKGINRANSV  158 (448)
Q Consensus        82 ~Le~~l~~~~~~~~~~~lVv~~~~~t~tG~~~~---l~~I~~ia~~~g~~l~VD~A~~~~~~~~~~~~~~~~~~~~aD~~  158 (448)
                      ++++.+.+      ++++++++.++|+||.+.+   +++|+++|++||++++.|.+|+...+......... ....--++
T Consensus       156 ~l~~~~~~------~~~~i~~~~P~NPTG~~~s~~~~~~l~~~~~~~~~~ii~De~y~~~~~~~~~~~~~~-~~~~~~i~  228 (382)
T d1b5pa_         156 RVRRAITP------RTKALVVNSPNNPTGAVYPKEVLEALARLAVEHDFYLVSDEIYEHLLYEGEHFSPGR-VAPEHTLT  228 (382)
T ss_dssp             HHHTTCCT------TEEEEEEESSCTTTCCCCCHHHHHHHHHHHHHTTCEEEEECTTTTCBSSSCCCCGGG-TCTTTEEE
T ss_pred             HHHHhCCC------CCeEEEECCCCCCcchhCCHHHHHHHHHHHHHcCeEEEEEccccceecCCCCCCHHH-cCCCCEEE
Confidence            99988754      5789999999999998855   77888999999999999999986554322211111 11112356


Q ss_pred             EECCccccCCC-CceEEEEEec
Q psy14299        159 SWNPHKMLGAP-LQCSILLIKE  179 (448)
Q Consensus       159 ~~s~hK~l~~P-~g~G~l~vr~  179 (448)
                      ..|+.|.++.| .-+|+++..+
T Consensus       229 ~~s~SK~~~~~GlR~G~~~~~~  250 (382)
T d1b5pa_         229 VNGAAKAFAMTGWRIGYACGPK  250 (382)
T ss_dssp             EEESTTTTTCGGGCCEEEECCH
T ss_pred             EecchhhccCcHhheEEEEECH
Confidence            67889988766 3478776533

>d1wsta1 c.67.1.1 (A:13-415) Multiple substrate aminotransferase, MSAT {Thermococcus profundus [TaxId: 49899]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: AAT-like
domain: Multiple substrate aminotransferase, MSAT
species: Thermococcus profundus [TaxId: 49899]

Probab=99.66  E-value=1.5e-14  Score=144.21  Aligned_cols=157  Identities=10%  Similarity=0.094  Sum_probs=108.7

Q ss_pred             cEEEeCcHHHHHHHHHHHHHHhcCCcccccCCCCCCCeEEEecCCCchHHHHHHHHhCCCCCcEEEEecCCCCCcCHHHH
Q psy14299          4 KPFLLPGGSISNMYSICLARYRLDPDTKRKGLSHLPPLCMFTSEDSHYSMLKAAHWLGIGMDNVIRVKTNERGQMICSFL   83 (448)
Q Consensus         4 ~g~~t~ggT~an~~al~~a~~~~~~~~~~~G~~~~~~~~Vl~~~~~H~s~~~~~~~~g~~~~~v~~v~~~~~g~id~e~L   83 (448)
                      ..++|+|+++++.+++.+...              +++.|+++...|..+...+...|.   ++..++.++++. +...+
T Consensus        96 ~I~it~G~~~al~~~~~~l~~--------------~gd~v~~~~P~y~~~~~~~~~~g~---~~~~v~~~~~~~-~~~~~  157 (403)
T d1wsta1          96 EIMTVAGSQQALDLIGRVFLN--------------PGDPIVVEAPTYLAAIQAFKYYDP---EFISIPLDDKGM-RVDLL  157 (403)
T ss_dssp             EEEEESSHHHHHHHHHHHHCC--------------TTCEEEEEESCCHHHHHHHHTTCC---EEEEEEEETTEE-CHHHH
T ss_pred             HeeecccchHHHHHHHHHHhh--------------cCCccccCCCcchhhhHHHhhccc---cceeEeecccCC-ccccc
Confidence            478999999999888776543              567788899999999999998888   788888876543 33333


Q ss_pred             HHHHHHhh-hcCCCcEEEEEeccCCccccccC---HHHHHHHHHHcCCEEEEecccccccccccchhhh--hcCCCCccE
Q psy14299         84 EQTIQTSL-AEKKIPLFVNATAGTTVLGAFDP---LDEIATVCEKYDLWMHVDACWGGSLIFSEKYSFV--LKGINRANS  157 (448)
Q Consensus        84 e~~l~~~~-~~~~~~~lVv~~~~~t~tG~~~~---l~~I~~ia~~~g~~l~VD~A~~~~~~~~~~~~~~--~~~~~~aD~  157 (448)
                      ........ .....+.+++++.++|+||.+.+   +++|+++|++||++++.|.+|.............  .... .--.
T Consensus       158 ~~~~~~~~~~~~~~~~~~~~~~p~NPtG~~~s~~~l~~i~~~a~~~~~~li~De~y~~l~~~~~~~~~~~~~~~~-~~~i  236 (403)
T d1wsta1         158 EEKLEELRKQGKRVKIVYTVSTFQNPAGVTMSVDRRKKLLELANEYDFLIVEDGPYSELRYSGEPTPPIKHFDDY-GRVI  236 (403)
T ss_dssp             HHHHHHHHHTTCCCCEEEECCSSCTTTCCCCCHHHHHHHHHHHHHTTCEEEEECTTTTCBCSSCCCCCGGGGCSS-SCEE
T ss_pred             cccchhhhhccccccccccccccCCCCCccCCHHHHHHHHHHHHhcCceeccccchhheecCCCCCCcccccCCC-CcEE
Confidence            33332222 22334567888889999997755   5678889999999999999997544322111110  1111 2346


Q ss_pred             EEECCccccCCCCceEEEEEec
Q psy14299        158 VSWNPHKMLGAPLQCSILLIKE  179 (448)
Q Consensus       158 ~~~s~hK~l~~P~g~G~l~vr~  179 (448)
                      ++.|++|++++-..+|+++..+
T Consensus       237 ~~~S~SK~~~~G~RiG~~i~~~  258 (403)
T d1wsta1         237 YLGTFSKILAPGFRIGWVAAHP  258 (403)
T ss_dssp             EEEESTTTTCGGGCCEEEEECH
T ss_pred             EEccccceecCcccccccccch
Confidence            7789999986446777776643

>d1bw0a_ c.67.1.1 (A:) Tyrosine aminotransferase (TAT) {Trypanosoma cruzi [TaxId: 5693]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: AAT-like
domain: Tyrosine aminotransferase (TAT)
species: Trypanosoma cruzi [TaxId: 5693]

Probab=99.66  E-value=6.6e-15  Score=147.37  Aligned_cols=154  Identities=12%  Similarity=0.080  Sum_probs=111.7

Q ss_pred             cEEEeCcHHHHHHHHHHHHHHhcCCcccccCCCCCCCeEEEecCCCchHHHHHHHHhCCCCCcEEEEecCC--CCCcCHH
Q psy14299          4 KPFLLPGGSISNMYSICLARYRLDPDTKRKGLSHLPPLCMFTSEDSHYSMLKAAHWLGIGMDNVIRVKTNE--RGQMICS   81 (448)
Q Consensus         4 ~g~~t~ggT~an~~al~~a~~~~~~~~~~~G~~~~~~~~Vl~~~~~H~s~~~~~~~~g~~~~~v~~v~~~~--~g~id~e   81 (448)
                      ..++|+|+++++..++.+..+              +++.|+++...+..+...++..|.   +++.+|.++  ++.++++
T Consensus       103 ~I~it~G~~~al~~~~~~l~~--------------~Gd~Vlv~~P~y~~~~~~~~~~G~---~~~~v~~~~~~~~~~~~~  165 (412)
T d1bw0a_         103 NVVLCSGGSHGILMAITAICD--------------AGDYALVPQPGFPHYETVCKAYGI---GMHFYNCRPENDWEADLD  165 (412)
T ss_dssp             GEEEESHHHHHHHHHHHHHCC--------------TTCEEEEEESCCTHHHHHHHHTTC---EEEEEEEEGGGTTEECHH
T ss_pred             eEEEecccccchhhhhhhhhc--------------cccceeeeeccchhhhhhhhccCc---cccccccccccccchhhH
Confidence            578999999998888776544              677888898999999999999999   788888764  4578999


Q ss_pred             HHHHHHHHhhhcCCCcEEEEEeccCCccccccC---HHHHHHHHHHcCCEEEEecccccccccccchhh---hhcCCCC-
Q psy14299         82 FLEQTIQTSLAEKKIPLFVNATAGTTVLGAFDP---LDEIATVCEKYDLWMHVDACWGGSLIFSEKYSF---VLKGINR-  154 (448)
Q Consensus        82 ~Le~~l~~~~~~~~~~~lVv~~~~~t~tG~~~~---l~~I~~ia~~~g~~l~VD~A~~~~~~~~~~~~~---~~~~~~~-  154 (448)
                      ++++.+.+      .+++++++.++|+||.+.+   +++|+++|++|++++++|.+|....+.......   .....+. 
T Consensus       166 ~l~~~~~~------~~~~~~l~np~NPtG~~~~~~~~~~i~~~~~~~~~~vi~De~Y~~~~~~~~~~~~~~~~~~~~~~~  239 (412)
T d1bw0a_         166 EIRRLKDD------KTKLLIVTNPSNPCGSNFSRKHVEDIVRLAEELRLPLFSDEIYAGMVFKGKDPNATFTSVADFETT  239 (412)
T ss_dssp             HHHHHCCT------TEEEEEEESSCTTTCCCCCHHHHHHHHHHHHHHTCCEEEECTTTTCBCCSSCTTCCCCCTTSSCCS
T ss_pred             HHHhhhhc------cccccccccccccccccchhhhccccccccccCCeeeechhhHHHhccCCCCCccccccccccccc
Confidence            99887654      5789999999999998754   778889999999999999999765442111000   0001111 


Q ss_pred             cc-EEEECCccccCCC-CceEEEEEecc
Q psy14299        155 AN-SVSWNPHKMLGAP-LQCSILLIKEK  180 (448)
Q Consensus       155 aD-~~~~s~hK~l~~P-~g~G~l~vr~~  180 (448)
                      .. .+..++.|.++.| .-+|++++.+.
T Consensus       240 ~~~~~~~s~SK~~~~~G~RvG~~~~~~~  267 (412)
T d1bw0a_         240 VPRVILGGTAKNLVVPGWRLGWLLYVDP  267 (412)
T ss_dssp             CCEEEEEESTTTTSCGGGCCEEEEEECT
T ss_pred             cccccccccCccCccCCCCcccccccch
Confidence            11 3445678877655 44677666443

>d2c0ra1 c.67.1.4 (A:2-362) Phosphoserine aminotransferase, PSAT {Bacillus circulans, subsp. alkalophilus [TaxId: 1397]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: GABA-aminotransferase-like
domain: Phosphoserine aminotransferase, PSAT
species: Bacillus circulans, subsp. alkalophilus [TaxId: 1397]

Probab=99.65  E-value=2.6e-16  Score=154.71  Aligned_cols=142  Identities=11%  Similarity=0.008  Sum_probs=101.7

Q ss_pred             cEEEeCcHHHHHHHHHHHHHHhcCCcccccCCCCCCCeEEEecCCCchH--HHHHHHHhCCCCCcEEEEecCCCCCcCHH
Q psy14299          4 KPFLLPGGSISNMYSICLARYRLDPDTKRKGLSHLPPLCMFTSEDSHYS--MLKAAHWLGIGMDNVIRVKTNERGQMICS   81 (448)
Q Consensus         4 ~g~~t~ggT~an~~al~~a~~~~~~~~~~~G~~~~~~~~Vl~~~~~H~s--~~~~~~~~g~~~~~v~~v~~~~~g~id~e   81 (448)
                      ..+|++|++++++.++......             +++.+++-...+.+  +.+.+...|.   .+..++.+....++++
T Consensus        68 ~i~~~~gs~t~~~ea~~~~l~~-------------~~~~~l~~~~g~~~~~~~~~~~~~g~---~~~~~~~~~~~~~~~~  131 (361)
T d2c0ra1          68 KVLFIQGGASTQFAMIPMNFLK-------------EGQTANYVMTGSWASKALKEAKLIGD---THVAASSEASNYMTLP  131 (361)
T ss_dssp             EEEEESSHHHHHHHHHHHHHCC-------------TTCEEEEEECSHHHHHHHHHHHHHSC---EEEEEECGGGTTCSCC
T ss_pred             EEEEECCCchHHHHHHHhcccc-------------CCCceEEEeechhhhhhhhhhhhcCc---eeeeeccccccccchh
Confidence            4789999998887765543332             34444433222222  4466666677   7888888888888888


Q ss_pred             HHHHHHHHhhhcCCCcEEEEEeccCCccccccCHHHHHHHHHHcCCEEEEecccccccccccchhhhhcCCCCccEEEEC
Q psy14299         82 FLEQTIQTSLAEKKIPLFVNATAGTTVLGAFDPLDEIATVCEKYDLWMHVDACWGGSLIFSEKYSFVLKGINRANSVSWN  161 (448)
Q Consensus        82 ~Le~~l~~~~~~~~~~~lVv~~~~~t~tG~~~~l~~I~~ia~~~g~~l~VD~A~~~~~~~~~~~~~~~~~~~~aD~~~~s  161 (448)
                      .+++.+...      +    +++.++.||...|+++|.++|+++|++++||++++++..+++...        .|+..++
T Consensus       132 ~~~~~~~~~------~----~~~v~~~tg~~~~~~~i~~~~~~~~al~~vDavss~g~~~id~~~--------~di~~~s  193 (361)
T d2c0ra1         132 KLQEIQLQD------N----AAYLHLTSNETIEGAQFKAFPDTGSVPLIGDMSSDILSRPFDLNQ--------FGLVYAG  193 (361)
T ss_dssp             CGGGCCCCT------T----EEEEEEESEETTTTEECSSCCCCTTSCEEEECTTTTTSSCCCGGG--------CSEEEEE
T ss_pred             hhhhhcccC------c----ceEEEEecccceecceEEEeeccCCceEEEEeecccccccccccc--------ceeEEEe
Confidence            887766431      2    244567789999999999999999999999999999998877542        3677778


Q ss_pred             CccccCCCCceEEEEEec
Q psy14299        162 PHKMLGAPLQCSILLIKE  179 (448)
Q Consensus       162 ~hK~l~~P~g~G~l~vr~  179 (448)
                      +||+++.|++.++++..+
T Consensus       194 ~~k~~~~~~~~~~~~~~~  211 (361)
T d2c0ra1         194 AQKNLGPSGVTVVIVRED  211 (361)
T ss_dssp             TTTTTCCSSCEEEEEEGG
T ss_pred             cccccccccCcEEEEEhH
Confidence            899998777666655433

>d1wyub1 c.67.1.7 (B:2-472) Glycine dehydrogenase subunit 2 (P-protein) {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: Glycine dehydrogenase subunits (GDC-P)
domain: Glycine dehydrogenase subunit 2 (P-protein)
species: Thermus thermophilus [TaxId: 274]

Probab=99.64  E-value=3.5e-14  Score=143.96  Aligned_cols=279  Identities=13%  Similarity=0.092  Sum_probs=184.0

Q ss_pred             EEEecCCCchHHHHHHHHhCCCCCcEEEEecCCCCCcCHHHHHHHHHHhhhcCCCcEEEEEeccCCccccccCHHHHHHH
Q psy14299         42 CMFTSEDSHYSMLKAAHWLGIGMDNVIRVKTNERGQMICSFLEQTIQTSLAEKKIPLFVNATAGTTVLGAFDPLDEIATV  121 (448)
Q Consensus        42 ~Vl~~~~~H~s~~~~~~~~g~~~~~v~~v~~~~~g~id~e~Le~~l~~~~~~~~~~~lVv~~~~~t~tG~~~~l~~I~~i  121 (448)
                      .++.+...|..........+.   .++.++.+..+..|.+.++....+      .+..+++..+++..+...++++++++
T Consensus       157 ~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~------~~a~v~v~~p~~~g~~e~~~~~~~~~  227 (471)
T d1wyub1         157 VVLVPDSAHGSNPATASMAGY---QVREIPSGPEGEVDLEALKRELGP------HVAALMLTNPNTLGLFERRILEISRL  227 (471)
T ss_dssp             EEEEETTSCTHHHHHHHHTTC---EEEEECBCTTSSBCHHHHHHHCST------TEEEEEECSSCTTSCCCTTHHHHHHH
T ss_pred             cccCCcccccceeeeeecccc---eeecccccccccccchhhhhhhhc------cccceeeccCCCcccccchhhhhHHH
Confidence            455566666666666666666   688888888899999999887654      35678888887744455669999999


Q ss_pred             HHHcCCEEEEecccccccccccchhhhhcCCCCccEEEECCccccCCC-----CceEEEEEeccchhhhhccCCcccccc
Q psy14299        122 CEKYDLWMHVDACWGGSLIFSEKYSFVLKGINRANSVSWNPHKMLGAP-----LQCSILLIKEKGLLHQANATAATYLFQ  196 (448)
Q Consensus       122 a~~~g~~l~VD~A~~~~~~~~~~~~~~~~~~~~aD~~~~s~hK~l~~P-----~g~G~l~vr~~~~~~~~~~~~~~y~~~  196 (448)
                      +|++|..+++|++.............     .++|.++++.|+.++.|     +++|++.++++ +.+.    .|+-+-.
T Consensus       228 ~h~~g~~~~~~~~~~~~~~~l~~p~~-----~g~div~vg~~q~~G~P~~~GGP~~G~~a~~~~-~~R~----~PGRiV~  297 (471)
T d1wyub1         228 CKEAGVQLYYDGANLNAIMGWARPGD-----MGFDVVHLNLHKTFTVPHGGGGPGSGPVGVKAH-LAPY----LPVPLVE  297 (471)
T ss_dssp             HHHHTCEEEEEGGGGGGTTTTCCHHH-----HTCSEEECCTTTTTCCCCTTSCCCCCCEEECGG-GGGG----CCSCEEE
T ss_pred             HHhccccccccccchhhhhhccccCc-----ccccccccccccccccccccccccccceeehhh-hhcc----CCCceec
Confidence            99999999999865443321111110     14789999999988776     45667777654 3322    2222211


Q ss_pred             cCcccccccCCCCCcccCCCCchhHHHHHHHHHhChHHHHHHHHHhhhhccCCCccchhhhhhhhhhhhhhhhhhhhhhh
Q psy14299        197 QDKFYDVSFDTGDKSVQCGRKVDAFKLWLMWKARGNLGFRHFVDNAVDCSRGSMTFSTLLCFDLQGLLHQANATAATYLF  276 (448)
Q Consensus       197 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~g~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  276 (448)
                      .......        ....|.                       ++++                                
T Consensus       298 ~~~~~~~--------~~~~RE-----------------------qhIr--------------------------------  314 (471)
T d1wyub1         298 RGEEGFY--------LDFDRP-----------------------KSIG--------------------------------  314 (471)
T ss_dssp             ECSSCEE--------EECCCT-----------------------TCCC--------------------------------
T ss_pred             CCCcccc--------ccCCCc-----------------------cccc--------------------------------
Confidence            1110000        001111                       0000                                


Q ss_pred             ccccccccccCCCCCcccccc-chhhHHHHHHHHHhcCccHHHHHHHHHHHHHHHHHHhhcCCCeEEeccCCceeeEEEE
Q psy14299        277 QQDKFYDVSFDTGDKSVQCGR-KVDAFKLWLMWKARGNLGFRHFVDNAVDCSRYFLSQISQRPGFRLVIPEFQCTNICFW  355 (448)
Q Consensus       277 ~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~G~~~~~~~~~~l~~~~~~~L~~~pg~~l~~~~~~~~~v~f~  355 (448)
                                    ++-.|++ -..+++.++.+.++|.+|++++.++...+++|++++|+. +|+++....+.+..+++.
T Consensus       315 --------------Re~actnqaL~al~A~vYlsllG~~GL~elA~~~~~~A~Yla~~L~~-~G~~~~~~~~ff~EFvv~  379 (471)
T d1wyub1         315 --------------RVRSFYGNFLALVRAWAYIRTLGLEGLKKAAALAVLNARYLKELLKE-KGYRVPYDGPSMHEFVAQ  379 (471)
T ss_dssp             --------------CSSSTTSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-TTCBCSSCSSCCSCEEEB
T ss_pred             --------------chhhhhhhHHHHHHHHHHHHHhCchhHHHHHHHHHHHHHHHHHHHhh-cCceeccCcceeeEEeec
Confidence                          0112544 455778889999999999999999999999999999977 799986344556666654


Q ss_pred             eeccCCCccccchhhhhhhhhhhHHHHHHHHhCCcEEEEeeecCCcccccEEEEEecCCCCCCHHHHHHHHHHHHHHHHH
Q psy14299        356 FIPVSLRDKVEDETWWSTLSKVAPRIKEKLVLGGTLMIGYQPLQHRNLHNFFRLVTTCHPASSRQDMDYAIDQIELRGAE  435 (448)
Q Consensus       356 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~~L~~~g~~~~~~~~~~g~~~~~~lRis~~~~~~~t~edid~l~~al~~~~~~  435 (448)
                      . +.+++               ..++.++|++.|+ +. +........++.+-|++  ...+|++|||+|+++|+++.++
T Consensus       380 ~-~~~~~---------------~~~i~k~L~~~G~-~~-~~~~~p~~~~~~llv~v--TE~~tkedID~lv~aL~~i~~e  439 (471)
T d1wyub1         380 P-PEGFR---------------ALDLAKGLLELGF-HP-PTVYFPLIVKEALMVEP--TETEAKETLEAFAEAMGALLKK  439 (471)
T ss_dssp             C-STTCC---------------HHHHHHHHHHTTC-CC-CEESCSTTSTTCEEECC--CTTSCHHHHHHHHHHHHHHHTS
T ss_pred             C-CCCCC---------------HHHHHHHHHHcCC-CC-CcccCcCCCCCeEEEec--CCCCCHHHHHHHHHHHHHHHHh
Confidence            3 32222               2368889999984 22 22211111136788999  5899999999999999999886


Q ss_pred             hH
Q psy14299        436 VD  437 (448)
Q Consensus       436 ~~  437 (448)
                      ..
T Consensus       440 ~~  441 (471)
T d1wyub1         440 PK  441 (471)
T ss_dssp             CH
T ss_pred             hH
Confidence            54

>d1c7na_ c.67.1.3 (A:) Cystalysin {Treponema denticola [TaxId: 158]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: Cystathionine synthase-like
domain: Cystalysin
species: Treponema denticola [TaxId: 158]

Probab=99.64  E-value=5.1e-15  Score=147.42  Aligned_cols=156  Identities=13%  Similarity=0.019  Sum_probs=110.6

Q ss_pred             cEEEeCcHHHHHHHHHHHHHHhcCCcccccCCCCCCCeEEEecCCCchHHHHHHHHhCCCCCcEEEEecC---CCCCcCH
Q psy14299          4 KPFLLPGGSISNMYSICLARYRLDPDTKRKGLSHLPPLCMFTSEDSHYSMLKAAHWLGIGMDNVIRVKTN---ERGQMIC   80 (448)
Q Consensus         4 ~g~~t~ggT~an~~al~~a~~~~~~~~~~~G~~~~~~~~Vl~~~~~H~s~~~~~~~~g~~~~~v~~v~~~---~~g~id~   80 (448)
                      ..++|+|+++++.+++.+..+              |++.|++....++.........|.   ..+.++..   ..+.+|.
T Consensus        91 ~I~vt~G~~~al~~~~~~~~~--------------pgd~vi~~~p~~~~~~~~~~~~g~---~~v~~~~~~~~~~~~~d~  153 (394)
T d1c7na_          91 WIINTAGVVPAVFNAVREFTK--------------PGDGVIIITPVYYPFFMAIKNQER---KIIECELLEKDGYYTIDF  153 (394)
T ss_dssp             GEEEESSHHHHHHHHHHHHCC--------------TTCEEEECSSCCTHHHHHHHTTTC---EEEECCCEEETTEEECCH
T ss_pred             ceEeeccchhhhhhhhccccc--------------cccccccccCcccchhhHHhhhhh---cccccccccccccccchh
Confidence            468999999999888877554              677788888889999998888877   55555542   3446888


Q ss_pred             HHHHHHHHHhhhcCCCcEEEEEeccCCccccccC---HHHHHHHHHHcCCEEEEecccccccccccchhhh---hcCCCC
Q psy14299         81 SFLEQTIQTSLAEKKIPLFVNATAGTTVLGAFDP---LDEIATVCEKYDLWMHVDACWGGSLIFSEKYSFV---LKGINR  154 (448)
Q Consensus        81 e~Le~~l~~~~~~~~~~~lVv~~~~~t~tG~~~~---l~~I~~ia~~~g~~l~VD~A~~~~~~~~~~~~~~---~~~~~~  154 (448)
                      +.++..+..     +++++++++.++|+||.+.+   +++|+++|++|++++++|.+|.-..+........   ......
T Consensus       154 ~~~~~~~~~-----~~~~~i~l~~P~NPTG~v~s~~~l~~l~~~a~~~~~~ii~De~Y~~~~~~~~~~~~~~~~~~~~~~  228 (394)
T d1c7na_         154 QKLEKLSKD-----KNNKALLFCSPHNPVGRVWKKDELQKIKDIVLKSDLMLWSDEIHFDLIMPGYEHTVFQSIDEQLAD  228 (394)
T ss_dssp             HHHHHHHTC-----TTEEEEEEESSBTTTTBCCCHHHHHHHHHHHHHSSCEEEEECTTTTCBCTTCCCCCGGGSCHHHHT
T ss_pred             hhhhhhhcc-----ccceEEEecccccccceeccHHHhhhhhccccccceeEeccccccccccCCccccchhhhhccccc
Confidence            888887743     36889999999999998866   6778899999999999999998654321111100   000001


Q ss_pred             ccEEEECCccccCCC-CceEEEEEeccc
Q psy14299        155 ANSVSWNPHKMLGAP-LQCSILLIKEKG  181 (448)
Q Consensus       155 aD~~~~s~hK~l~~P-~g~G~l~vr~~~  181 (448)
                      .-+++.|..|.++.| ..+|.+++.+..
T Consensus       229 ~~i~~~s~SK~~~~~G~R~g~~~~~~~~  256 (394)
T d1c7na_         229 KTITFTAPSKTFNIAGMGMSNIIIKNPD  256 (394)
T ss_dssp             TEEEEECSHHHHTCGGGCCEEEECCCHH
T ss_pred             ceeecccccccccccccccccccccChh
Confidence            235667889987754 445666665543

>d1c7ga_ c.67.1.2 (A:) Tyrosine phenol-lyase {Erwinia herbicola [TaxId: 549]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: Beta-eliminating lyases
domain: Tyrosine phenol-lyase
species: Erwinia herbicola [TaxId: 549]

Probab=99.64  E-value=1.5e-14  Score=147.03  Aligned_cols=160  Identities=12%  Similarity=0.080  Sum_probs=105.9

Q ss_pred             cEEEeCcHHHHHHHHHHHHHHhcCCcccccCCCCCCCeEEEecCCCchHHHHHHHHhCCCCCcEEEEec----------C
Q psy14299          4 KPFLLPGGSISNMYSICLARYRLDPDTKRKGLSHLPPLCMFTSEDSHYSMLKAAHWLGIGMDNVIRVKT----------N   73 (448)
Q Consensus         4 ~g~~t~ggT~an~~al~~a~~~~~~~~~~~G~~~~~~~~Vl~~~~~H~s~~~~~~~~g~~~~~v~~v~~----------~   73 (448)
                      .+++|++||+||++++.+..+              +++.|+++..-+.+. ......|.   ....+..          .
T Consensus        92 ~al~~~SGt~An~~a~~~l~~--------------~Gd~Vi~~~~f~~~~-~~i~~~g~---~~~~~~~~~~~~~~~~~~  153 (456)
T d1c7ga_          92 HIVPTHQGRGAENLLSQLAIK--------------PGQYVAGNMYFTTTR-FHQEKNGA---TFVDIVRDEAHDASLNLP  153 (456)
T ss_dssp             EEEEESSHHHHHHHHHHHHCC--------------TTEEEEESSCCHHHH-HHHHHTTE---EEEECBCGGGGCTTCCCS
T ss_pred             eEEECCCHHHHHHHHHHHhcC--------------CCCeEecCcchHHHH-HHHHHcCc---eeeeccccccccccccCC
Confidence            468999999999999887644              677888764322222 22334444   2222222          2


Q ss_pred             CCCCcCHHHHHHHHHHhhhcCCCcEEEEEeccCCccc----cccCHHHHHHHHHHcCCEEEEecccccccccccc-----
Q psy14299         74 ERGQMICSFLEQTIQTSLAEKKIPLFVNATAGTTVLG----AFDPLDEIATVCEKYDLWMHVDACWGGSLIFSEK-----  144 (448)
Q Consensus        74 ~~g~id~e~Le~~l~~~~~~~~~~~lVv~~~~~t~tG----~~~~l~~I~~ia~~~g~~l~VD~A~~~~~~~~~~-----  144 (448)
                      ..+.+|+++|++.|++...  ..+.++++...+|..|    .++++++|.++|++||+.+|+|+|+..+......     
T Consensus       154 ~~~~~d~~~le~~I~~~~~--~~~~~i~~e~~~n~~gG~~~~~~~l~~i~~~a~~~~~~~~~D~a~~~~~a~~~~~~~~~  231 (456)
T d1c7ga_         154 FKGDIDLNKLATLIKEKGA--ENIAYICLAVTVNLAGGQPVSMANMRAVHEMASTYGIKIFYDATRCVENAYFIKEQEAG  231 (456)
T ss_dssp             CTTCBCHHHHHHHHHHHCG--GGEEEEEEESSBTTTTSBCCCHHHHHHHHHHHHHHTCCEEEECTTHHHHHHHHHHHSTT
T ss_pred             ccccCCHHHHHHHhhhcCC--ccceeEEeeecccccccceecHHHHHHHHHHHHHcCCEEEEEcchhhcchhhhcccccc
Confidence            3578999999999987422  2355777777777665    3467899999999999999999998765421100     


Q ss_pred             hh-hhhc-----CCCCccEEEECCccccCCCCceEEEEEeccchhh
Q psy14299        145 YS-FVLK-----GINRANSVSWNPHKMLGAPLQCSILLIKEKGLLH  184 (448)
Q Consensus       145 ~~-~~~~-----~~~~aD~~~~s~hK~l~~P~g~G~l~vr~~~~~~  184 (448)
                      +. ..+.     -...+|+++++.||.+++|.| |+++.+++.+..
T Consensus       232 ~~~~~i~~i~~~~~~~ad~~s~s~~K~~~~~~G-G~i~~~~~~l~~  276 (456)
T d1c7ga_         232 YENVSIKDIVHEMFSYADGCTMSGKKDCLVNIG-GFLCMNDEEMFS  276 (456)
T ss_dssp             CTTSCHHHHHHHHHTTCSEEEEETTTTTCCSSC-EEEEESCHHHHH
T ss_pred             cCCCChhhhccccccccccEEEeccccccccce-eEEEcCCHHHHH
Confidence            00 0000     012479999999999998776 666676655433

>d1dfoa_ c.67.1.4 (A:) Serine hydroxymethyltransferase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: GABA-aminotransferase-like
domain: Serine hydroxymethyltransferase
species: Escherichia coli [TaxId: 562]

Probab=99.64  E-value=1e-14  Score=143.66  Aligned_cols=287  Identities=13%  Similarity=0.121  Sum_probs=189.4

Q ss_pred             eCcHHHHHHHHHHHHHHhcCCcccccCCCCCCCeEEEecCCCch---HHHHHHHHhCCCCCcEEEEecCCCCCcCHHHHH
Q psy14299          8 LPGGSISNMYSICLARYRLDPDTKRKGLSHLPPLCMFTSEDSHY---SMLKAAHWLGIGMDNVIRVKTNERGQMICSFLE   84 (448)
Q Consensus         8 t~ggT~an~~al~~a~~~~~~~~~~~G~~~~~~~~Vl~~~~~H~---s~~~~~~~~g~~~~~v~~v~~~~~g~id~e~Le   84 (448)
                      ..+|+.||+.+..+..+              |++.|+.-+..|-   +--..+...|... +....+.++++.+|.++++
T Consensus        94 p~SGs~AN~av~~All~--------------pGD~Il~l~l~~GGHlshg~~~~~~g~~~-~~~~y~~d~~~~IDyd~l~  158 (416)
T d1dfoa_          94 PHSGSQANFAVYTALLE--------------PGDTVLGMNLAHGGHLTHGSPVNFSGKLY-NIVPYGIDATGHIDYADLE  158 (416)
T ss_dssp             CSSHHHHHHHHHHHHCC--------------TTCEEEEECTTTTCCGGGTCTTSHHHHHS-EEEEECBCSSSSBCHHHHH
T ss_pred             cccCccHHHHHHHHhcC--------------CCCeeeeccccccccccccccccccCceE-EEEecccCCccCccHHHHH
Confidence            47899999888877654              6777776655543   3222222222211 4566777788899999999


Q ss_pred             HHHHHhhhcCCCcEEEEEeccCCccccccCHHHHHHHHHHcCCEEEEecccccccccccchhhhhcCCCCccEEEECCcc
Q psy14299         85 QTIQTSLAEKKIPLFVNATAGTTVLGAFDPLDEIATVCEKYDLWMHVDACWGGSLIFSEKYSFVLKGINRANSVSWNPHK  164 (448)
Q Consensus        85 ~~l~~~~~~~~~~~lVv~~~~~t~tG~~~~l~~I~~ia~~~g~~l~VD~A~~~~~~~~~~~~~~~~~~~~aD~~~~s~hK  164 (448)
                      +..++.     +|++|++..  +......|++++.++|++.|+++++|.||-.|......++.   .+..+|+++.+.||
T Consensus       159 ~~a~~~-----kPklIi~G~--S~y~r~~d~~~~reiad~vga~l~~D~aH~~GLIa~g~~~s---P~~~aDvvt~tThK  228 (416)
T d1dfoa_         159 KQAKEH-----KPKMIIGGF--SAYSGVVDWAKMREIADSIGAYLFVDMAHVAGLVAAGVYPN---PVPHAHVVTTTTHK  228 (416)
T ss_dssp             HHHHHH-----CCSEEEEEC--SSCCSCCCHHHHHHHHHHTTCEEEEECTTTHHHHHHTSSCC---CTTTSSEEEEESSS
T ss_pred             HHHHHh-----ccceEEecc--cccccccCHHHHHHHHHhcCceEEcchhhhhcceeccccCC---cccccceeeeehhh
Confidence            999873     788888764  44678889999999999999999999999998775444332   23458999999999


Q ss_pred             ccCCCCceEEEEEecc--chhhhhccCCcccccccCcccccccCCCCCcccCCCCchhHHHHHHHHHhChHHHHHHHHHh
Q psy14299        165 MLGAPLQCSILLIKEK--GLLHQANATAATYLFQQDKFYDVSFDTGDKSVQCGRKVDAFKLWLMWKARGNLGFRHFVDNA  242 (448)
Q Consensus       165 ~l~~P~g~G~l~vr~~--~~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~g~~~~i~~~  242 (448)
                      .|.+|.| |++++++.  ++........-+.                  ++++.....                      
T Consensus       229 tlrGPrg-giI~~~~~~~~~~~~i~~avfPg------------------~qggp~~~~----------------------  267 (416)
T d1dfoa_         229 TLAGPRG-GLILAKGGSEELYKKLNSAVFPG------------------GQGGPLMHV----------------------  267 (416)
T ss_dssp             TTCCCSC-EEEEESSCCHHHHHHHHHHHTTT------------------TCSSCCHHH----------------------
T ss_pred             cccCCCc-eEEEeccchHhHHHHHHhhhCcc------------------cccCccHHH----------------------
Confidence            9999974 55555432  2212111100011                  111111111                      


Q ss_pred             hhhccCCCccchhhhhhhhhhhhhhhhhhhhhhhccccccccccCCCCCccccccchhhHHHHHHHHHhcCccHHHHHHH
Q psy14299        243 VDCSRGSMTFSTLLCFDLQGLLHQANATAATYLFQQDKFYDVSFDTGDKSVQCGRKVDAFKLWLMWKARGNLGFRHFVDN  322 (448)
Q Consensus       243 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~  322 (448)
                                                                                +.+.++++.......+++..++
T Consensus       268 ----------------------------------------------------------iaa~Aval~Ea~~~~fk~Y~~q  289 (416)
T d1dfoa_         268 ----------------------------------------------------------IAGKAVALKEAMEPEFKTYQQQ  289 (416)
T ss_dssp             ----------------------------------------------------------HHHHHHHHHHTTSHHHHHHHHH
T ss_pred             ----------------------------------------------------------HHHHHHHHHHHcCHHHHHHHHH
Confidence                                                                      1223455555555667778888


Q ss_pred             HHHHHHHHHHHhhcCCCeEEeccCCceeeEEEEeeccCCCccccchhhhhhhhhhhHHHHHHHHhCCcEEEEeeecCC--
Q psy14299        323 AVDCSRYFLSQISQRPGFRLVIPEFQCTNICFWFIPVSLRDKVEDETWWSTLSKVAPRIKEKLVLGGTLMIGYQPLQH--  400 (448)
Q Consensus       323 ~~~l~~~~~~~L~~~pg~~l~~~~~~~~~v~f~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~L~~~g~~~~~~~~~~g--  400 (448)
                      ..++++.|.+.|.+. ||+++.+....+.+.+.+.+.++++               .+..+.|.+.| +.+.-....+  
T Consensus       290 vv~NA~~La~~L~~~-G~~iv~ggTdnHlvlvdl~~~~~~G---------------~~a~~~Le~~g-I~~Nkn~iP~d~  352 (416)
T d1dfoa_         290 VAKNAKAMVEVFLER-GYKVVSGGTDNHLFLVDLVDKNLTG---------------KEADAALGRAN-ITVNKNSVPNDP  352 (416)
T ss_dssp             HHHHHHHHHHHHHHT-TCEEGGGSCSSSEEEEECGGGTCCH---------------HHHHHHHHHTT-EECEECCCTTCS
T ss_pred             HHHHHHHHHHHHHhC-CcccccCCCCCceeEEEecccCCCH---------------HHHHHHHHHcC-eEEeCCcCCCCC
Confidence            999999999999998 9999844456777777766555442               35666777778 5554322221  


Q ss_pred             c--ccccEEEEEecC--CCCCCHHHHHHHHHHHHHHHHH
Q psy14299        401 R--NLHNFFRLVTTC--HPASSRQDMDYAIDQIELRGAE  435 (448)
Q Consensus       401 ~--~~~~~lRis~~~--~~~~t~edid~l~~al~~~~~~  435 (448)
                      .  ..+..||++.-.  .....++|++++.+.|.++.+.
T Consensus       353 ~~~~~~SGiRiGT~a~TtrG~~e~d~~~iA~~I~~~l~~  391 (416)
T d1dfoa_         353 KSPFVTSGIRVGTPAITRRGFKEAEAKELAGWMCDVLDS  391 (416)
T ss_dssp             SCTTTCSEEEEECHHHHHTTCCHHHHHHHHHHHHHHHHT
T ss_pred             CCCCCCCceEeCCHHHHhCCCCHHHHHHHHHHHHHHHHc
Confidence            1  123679998731  2234679999999998888754

>d1lc5a_ c.67.1.1 (A:) L-threonine-O-3-phosphate decarboxylase CobD {Salmonella enterica [TaxId: 28901]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: AAT-like
domain: L-threonine-O-3-phosphate decarboxylase CobD
species: Salmonella enterica [TaxId: 28901]

Probab=99.63  E-value=4.1e-14  Score=138.61  Aligned_cols=149  Identities=15%  Similarity=0.066  Sum_probs=93.5

Q ss_pred             EEEeCcHHHHHHHHHHHHHHhcCCcccccCCCCCCCeEEEecCCCchHHHHHHHHhCCCCCcEEEEecCC--CCCcCHHH
Q psy14299          5 PFLLPGGSISNMYSICLARYRLDPDTKRKGLSHLPPLCMFTSEDSHYSMLKAAHWLGIGMDNVIRVKTNE--RGQMICSF   82 (448)
Q Consensus         5 g~~t~ggT~an~~al~~a~~~~~~~~~~~G~~~~~~~~Vl~~~~~H~s~~~~~~~~g~~~~~v~~v~~~~--~g~id~e~   82 (448)
                      .++++|+++++...+.. ...             ++..|..+  .+..+.......+.   .+..+|.+.  ++.++ +.
T Consensus        77 I~~~~g~~~~~~~~~~~-~~~-------------~~~~v~~p--~~~~~~~~~~~~~~---~~~~v~~~~~~~~~~~-~~  136 (355)
T d1lc5a_          77 ILAGNGETESIFTVASG-LKP-------------RRAMIVTP--GFAEYGRALAQSGC---EIRRWSLREADGWQLT-DA  136 (355)
T ss_dssp             EEEESSHHHHHHHHHHH-HCC-------------SEEEEEES--CCTHHHHHHHHTTC---EEEEEECCGGGTTCCC-TT
T ss_pred             EEecccHHHHHHHHHhh-hcc-------------ccccccCC--ccceeccccccccc---cceeeeeeccCCccce-ee
Confidence            66777777775554432 221             34444443  44455566666677   677788753  34444 44


Q ss_pred             HHHHHHHhhhcCCCcEEEEEeccCCccccccC---HHHHHHHHHHcCCEEEEecccccccccccchhhhhcCCCCccEEE
Q psy14299         83 LEQTIQTSLAEKKIPLFVNATAGTTVLGAFDP---LDEIATVCEKYDLWMHVDACWGGSLIFSEKYSFVLKGINRANSVS  159 (448)
Q Consensus        83 Le~~l~~~~~~~~~~~lVv~~~~~t~tG~~~~---l~~I~~ia~~~g~~l~VD~A~~~~~~~~~~~~~~~~~~~~aD~~~  159 (448)
                      +++.+.      .++++|+++.++|+||...+   +++|.++|++|++++++|.++............... ...-.+++
T Consensus       137 ~~~~~~------~~~~~v~l~nP~NPtG~~~~~e~l~~i~~~a~~~~~~li~De~y~~~~~~~~~~~~~~~-~~~~~i~~  209 (355)
T d1lc5a_         137 ILEALT------PDLDCLFLCTPNNPTGLLPERPLLQAIADRCKSLNINLILDEAFIDFIPHETGFIPALK-DNPHIWVL  209 (355)
T ss_dssp             HHHHCC------TTCCEEEEESSCTTTCCCCCHHHHHHHHHHHHHHTCEEEEECTTGGGSTTCCCSGGGCT-TCTTEEEE
T ss_pred             eeeccc------cccceeeeecccCcccccchhhhhhhhhhhccccccccccccceeeeeeeccccccccc-ccccceee
Confidence            444432      35889999999999998866   677888999999999999998754332111111111 11234777


Q ss_pred             ECCccccCCC-CceEEEEEecc
Q psy14299        160 WNPHKMLGAP-LQCSILLIKEK  180 (448)
Q Consensus       160 ~s~hK~l~~P-~g~G~l~vr~~  180 (448)
                      .|+.|+++.| .-+|+++..++
T Consensus       210 ~S~SK~~~l~GlR~G~~i~~~~  231 (355)
T d1lc5a_         210 RSLTKFYAIPGLRLGYLVNSDD  231 (355)
T ss_dssp             EESTTTTTCTTTCCEEEECCCH
T ss_pred             cccccccccccccccceeccch
Confidence            8999998755 34677776544

>d1fg7a_ c.67.1.1 (A:) Histidinol-phosphate aminotransferase HisC {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: AAT-like
domain: Histidinol-phosphate aminotransferase HisC
species: Escherichia coli [TaxId: 562]

Probab=99.61  E-value=1.2e-13  Score=135.36  Aligned_cols=155  Identities=10%  Similarity=0.018  Sum_probs=109.4

Q ss_pred             cEEEeCcHHHHHHHHHHHHHHhcCCcccccCCCCCCCe-EEEecCCCchHHHHHHHHhCCCCCcEEEEecCCCCCcCHHH
Q psy14299          4 KPFLLPGGSISNMYSICLARYRLDPDTKRKGLSHLPPL-CMFTSEDSHYSMLKAAHWLGIGMDNVIRVKTNERGQMICSF   82 (448)
Q Consensus         4 ~g~~t~ggT~an~~al~~a~~~~~~~~~~~G~~~~~~~-~Vl~~~~~H~s~~~~~~~~g~~~~~v~~v~~~~~g~id~e~   82 (448)
                      ..++|+|+++++.+++.+...              |++ +|+++...+..+...++..|.   +++.++.++++.+|+++
T Consensus        75 ~I~it~Gs~eai~~~~~~~~~--------------pgd~~Vl~~~P~y~~~~~~~~~~g~---~v~~~~~~~~~~~d~~~  137 (354)
T d1fg7a_          75 QVLVSRGADEGIELLIRAFCE--------------PGKDAILYCPPTYGMYSVSAETIGV---ECRTVPTLDNWQLDLQG  137 (354)
T ss_dssp             GEEEESHHHHHHHHHHHHHCC--------------TTTCEEEECSSSCTHHHHHHHHHTC---EEEECCCCTTSCCCHHH
T ss_pred             HeeeccCchHHHHHHHHHhhc--------------cccccccccccccccchhhhhccCc---eeeccccccccccchhh
Confidence            468899999999888876654              443 688888899999999999998   78889988889999999


Q ss_pred             HHHHHHHhhhcCCCcEEEEEeccCCccccccCHHHHHHHH--HHcCCEEEEecccccccccccchhhhhcCCCCccEEEE
Q psy14299         83 LEQTIQTSLAEKKIPLFVNATAGTTVLGAFDPLDEIATVC--EKYDLWMHVDACWGGSLIFSEKYSFVLKGINRANSVSW  160 (448)
Q Consensus        83 Le~~l~~~~~~~~~~~lVv~~~~~t~tG~~~~l~~I~~ia--~~~g~~l~VD~A~~~~~~~~~~~~~~~~~~~~aD~~~~  160 (448)
                      ++..+.       ++++|+++.++|++|.+.+-+++..++  .+++.++++|.++.-...... ... ......--++.-
T Consensus       138 l~~~~~-------~~~~v~~~~pnNPtG~~~~~~~~~~~~~~~~~~~~~iidd~~~~f~~~~~-~~~-~~~~~~~~iv~~  208 (354)
T d1fg7a_         138 ISDKLD-------GVKVVYVCSPNNPTGQLINPQDFRTLLELTRGKAIVVADEAYIEFCPQAS-LAG-WLAEYPHLAILR  208 (354)
T ss_dssp             HHTSCT-------TEEEEEEESSCTTTCCCCCHHHHHHHHHHHTTTCEEEEECTTGGGSGGGC-SGG-GTTTCTTEEEEE
T ss_pred             hhhccc-------ccceeeccCCCccceeEeeecccccccccccccccccccccchhhccccc-cch-hhcccccceEEe
Confidence            987663       478999999999999987755544333  236788888888764322111 111 111112235567


Q ss_pred             CCccccCCC-CceEEEEEeccchhhh
Q psy14299        161 NPHKMLGAP-LQCSILLIKEKGLLHQ  185 (448)
Q Consensus       161 s~hK~l~~P-~g~G~l~vr~~~~~~~  185 (448)
                      |+.|.++.| .-+|+++. +++....
T Consensus       209 S~SK~~~laGlRiGy~i~-~~~~i~~  233 (354)
T d1fg7a_         209 TLSKAFALAGLRCGFTLA-NEEVINL  233 (354)
T ss_dssp             ESSSTTCCGGGCCEEEEE-CHHHHHH
T ss_pred             CCccccCCCccccccccc-cchhhhh
Confidence            999998866 45777765 4444443

>d1kl1a_ c.67.1.4 (A:) Serine hydroxymethyltransferase {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: GABA-aminotransferase-like
domain: Serine hydroxymethyltransferase
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=99.60  E-value=1.8e-14  Score=141.26  Aligned_cols=286  Identities=14%  Similarity=0.134  Sum_probs=183.9

Q ss_pred             eCcHHHHHHHHHHHHHHhcCCcccccCCCCCCCeEEEecC---CCchHHHHHHHHhCCCCCcEEEEecCC-CCCcCHHHH
Q psy14299          8 LPGGSISNMYSICLARYRLDPDTKRKGLSHLPPLCMFTSE---DSHYSMLKAAHWLGIGMDNVIRVKTNE-RGQMICSFL   83 (448)
Q Consensus         8 t~ggT~an~~al~~a~~~~~~~~~~~G~~~~~~~~Vl~~~---~~H~s~~~~~~~~g~~~~~v~~v~~~~-~g~id~e~L   83 (448)
                      ..+||.||+.+..+..+              |++.|+.-+   -.|.+--......|... ++...+.++ ++.||++++
T Consensus        91 p~SGs~An~av~~all~--------------pGD~im~l~l~~GGHlshg~~~~~~g~~~-~~~~y~~d~~~~~ID~d~l  155 (405)
T d1kl1a_          91 PHSGAQANMAVYFTVLE--------------HGDTVLGMNLSHGGHLTHGSPVNFSGVQY-NFVAYGVDPETHVIDYDDV  155 (405)
T ss_dssp             CSSHHHHHHHHHHHHCC--------------TTCEEEEECGGGTCCGGGTCTTSHHHHHS-EEEEECBCTTTCSBCHHHH
T ss_pred             ccCchHHHHHHHHHhcC--------------CCCEEEEeecccccccccCccccccceEE-EEEEeccchhcccccHHHH
Confidence            46899999888776654              666666544   34444322222222211 566677774 578999999


Q ss_pred             HHHHHHhhhcCCCcEEEEEeccCCccccccCHHHHHHHHHHcCCEEEEecccccccccccchhhhhcCCCCccEEEECCc
Q psy14299         84 EQTIQTSLAEKKIPLFVNATAGTTVLGAFDPLDEIATVCEKYDLWMHVDACWGGSLIFSEKYSFVLKGINRANSVSWNPH  163 (448)
Q Consensus        84 e~~l~~~~~~~~~~~lVv~~~~~t~tG~~~~l~~I~~ia~~~g~~l~VD~A~~~~~~~~~~~~~~~~~~~~aD~~~~s~h  163 (448)
                      ++.+++.     +|++|++....  .-...|++++.++|++.|+++++|.||-.|......++.-   ++.+|+++.+.|
T Consensus       156 ~~~a~~~-----kPklIi~G~S~--y~r~~d~~~~reIad~vga~l~~D~aH~~GLIa~g~~~~P---~~~aDvvt~tTh  225 (405)
T d1kl1a_         156 REKARLH-----RPKLIVAAASA--YPRIIDFAKFREIADEVGAYLMVDMAHIAGLVAAGLHPNP---VPYAHFVTTTTH  225 (405)
T ss_dssp             HHHHHHH-----CCSEEEECCSS--CCSCCCHHHHHHHHHHHTCEEEEECTTTHHHHHTTSSCCS---TTTCSEEEEESS
T ss_pred             HHHHHhh-----CcceEEecccc--cccccChHHHHHHHhhhCCEEecchhhHhhhhhhhhcCCh---hhhhhheecccc
Confidence            9999873     78888875544  4456789999999999999999999999887755444332   346899999999


Q ss_pred             cccCCCCceEEEEEeccchhhhhccCCcccccccCcccccccCCCCCcccCCCCchhHHHHHHHHHhChHHHHHHHHHhh
Q psy14299        164 KMLGAPLQCSILLIKEKGLLHQANATAATYLFQQDKFYDVSFDTGDKSVQCGRKVDAFKLWLMWKARGNLGFRHFVDNAV  243 (448)
Q Consensus       164 K~l~~P~g~G~l~vr~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~g~~~~i~~~~  243 (448)
                      |.|.+|.|. +++.++ +.........-+.                  ++++.....                       
T Consensus       226 KtlrGPrgg-~I~~~~-~~~~~i~~avfPg------------------~qggp~~~~-----------------------  262 (405)
T d1kl1a_         226 KTLRGPRGG-MILCQE-QFAKQIDKAIFPG------------------IQGGPLMHV-----------------------  262 (405)
T ss_dssp             STTCCCSCE-EEEECH-HHHHHHHHHHTTT------------------TCSSCCHHH-----------------------
T ss_pred             ccccCCCCc-eEEecc-hhHHHHHhhhCcc------------------cccCcchhH-----------------------
Confidence            999999854 445544 3333322111111                  122222111                       


Q ss_pred             hhccCCCccchhhhhhhhhhhhhhhhhhhhhhhccccccccccCCCCCccccccchhhHHHHHHHHHhcCccHHHHHHHH
Q psy14299        244 DCSRGSMTFSTLLCFDLQGLLHQANATAATYLFQQDKFYDVSFDTGDKSVQCGRKVDAFKLWLMWKARGNLGFRHFVDNA  323 (448)
Q Consensus       244 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~  323 (448)
                                                                               +.+.++++.......++...++.
T Consensus       263 ---------------------------------------------------------iAa~Aval~Ea~~~~fk~Ya~qv  285 (405)
T d1kl1a_         263 ---------------------------------------------------------IAAKAVAFGEALQDDFKAYAKRV  285 (405)
T ss_dssp             ---------------------------------------------------------HHHHHHHHHHHHSHHHHHHHHHH
T ss_pred             ---------------------------------------------------------HHHHHHHHHHHhChHHHHHHHHH
Confidence                                                                     11223344444445567778888


Q ss_pred             HHHHHHHHHHhhcCCCeEEeccCCceeeEEEEeeccCCCccccchhhhhhhhhhhHHHHHHHHhCCcEEEEeeecCC--c
Q psy14299        324 VDCSRYFLSQISQRPGFRLVIPEFQCTNICFWFIPVSLRDKVEDETWWSTLSKVAPRIKEKLVLGGTLMIGYQPLQH--R  401 (448)
Q Consensus       324 ~~l~~~~~~~L~~~pg~~l~~~~~~~~~v~f~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~L~~~g~~~~~~~~~~g--~  401 (448)
                      .++++.+.+.|.+. |++++.+-.+.+.+.+.+.+.++++               .+..+.|.+.| +.+.-..+.+  .
T Consensus       286 v~NAkaLa~~L~~~-G~~vv~ggTd~H~vlvdl~~~~~~g---------------~~ae~~Le~ag-I~~Nkn~iP~d~~  348 (405)
T d1kl1a_         286 VDNAKRLASALQNE-GFTLVSGGTDNHLLLVDLRPQQLTG---------------KTAEKVLDEVG-ITVNKNTIPYDPE  348 (405)
T ss_dssp             HHHHHHHHHHHHHT-TCEEGGGSCSSSEEEEECGGGTCCH---------------HHHHHHHHHHT-EECEECCCTTCSS
T ss_pred             HHHHHHHHHHHhcC-CceeecCCCccceeeccccccCCcH---------------HHHHHHHHHcC-eEEcCCcCCCCCC
Confidence            89999999999997 9999843345677777665555442               24445566678 5555332222  1


Q ss_pred             --ccccEEEEEecC--CCCCCHHHHHHHHHHHHHHHHH
Q psy14299        402 --NLHNFFRLVTTC--HPASSRQDMDYAIDQIELRGAE  435 (448)
Q Consensus       402 --~~~~~lRis~~~--~~~~t~edid~l~~al~~~~~~  435 (448)
                        ..+..||++.-.  .....++|+.++.+.|.++.+.
T Consensus       349 ~~~~~SGiRiGT~a~TtrG~~e~dm~~ia~~I~~~l~~  386 (405)
T d1kl1a_         349 SPFVTSGIRIGTAAVTTRGFGLEEMDEIAAIIGLVLKN  386 (405)
T ss_dssp             CTTTCSEEEEECHHHHHTTCCHHHHHHHHHHHHHHHTC
T ss_pred             CCCCCCceeecCHHHHhCCCCHHHHHHHHHHHHHHHhc
Confidence              123679998731  2235679999999999988753

>d1ax4a_ c.67.1.2 (A:) Tryptophan indol-lyase (tryptophanase) {Proteus vulgaris [TaxId: 585]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: Beta-eliminating lyases
domain: Tryptophan indol-lyase (tryptophanase)
species: Proteus vulgaris [TaxId: 585]

Probab=99.58  E-value=1.5e-13  Score=139.51  Aligned_cols=164  Identities=11%  Similarity=0.077  Sum_probs=104.6

Q ss_pred             cEEEeCcHHHHHHHHHHHHHHhcCCcccccCCCCCCCeEEEecCCCchHHHHHHHHhCCCCCcEEEEe----------cC
Q psy14299          4 KPFLLPGGSISNMYSICLARYRLDPDTKRKGLSHLPPLCMFTSEDSHYSMLKAAHWLGIGMDNVIRVK----------TN   73 (448)
Q Consensus         4 ~g~~t~ggT~an~~al~~a~~~~~~~~~~~G~~~~~~~~Vl~~~~~H~s~~~~~~~~g~~~~~v~~v~----------~~   73 (448)
                      .++||++||+||..++.+++++.    .+.|   .++..++.+...|.+........|.   ....++          .+
T Consensus        92 ~~~~~~sGt~A~~~a~~~~~~~g----~~~~---~~~~~~i~~~~h~~t~~~~~~~~g~---~~~~~~~~~~~~~~~~~~  161 (465)
T d1ax4a_          92 YIIPAHQGRGAENILFPVLLKYK----QKEG---KAKNPVFISNFHFDTTAAHVELNGC---KAINIVTEKAFDSETYDD  161 (465)
T ss_dssp             EEEEESSHHHHHHHHHHHHHHHH----HHTT---CCSSCEEEESSCCHHHHHHHHHTTC---EEEECBCGGGGCTTSCCT
T ss_pred             EEEECCCcHHHHHHHHHHHHHHH----HhcC---CCCCeEEeccchhhhhHHHHHHcCC---eeecccccccCCCCCCCC
Confidence            47999999999999999988652    1112   1233344555555566666666666   333332          12


Q ss_pred             CCCCcCHHHHHHHHHHhhhcCCCcEEEEEeccCCcccc----ccCHHHHHHHHHHcCCEEEEeccccccccccc------
Q psy14299         74 ERGQMICSFLEQTIQTSLAEKKIPLFVNATAGTTVLGA----FDPLDEIATVCEKYDLWMHVDACWGGSLIFSE------  143 (448)
Q Consensus        74 ~~g~id~e~Le~~l~~~~~~~~~~~lVv~~~~~t~tG~----~~~l~~I~~ia~~~g~~l~VD~A~~~~~~~~~------  143 (448)
                      ..+.+|+++|+++|++...  ..+.+++++...+..|.    ..++++|.++|++||+++|+|+|+..+.....      
T Consensus       162 ~~~~~d~~~l~~~i~~~~~--~~~~~~~~~~~~~~~g~~~~~~~~l~~i~~~~~~~g~~l~~D~~~~~~~~~~~~~~~~~  239 (465)
T d1ax4a_         162 WKGDFDIKKLKENIAQHGA--DNIVAIVSTVTCNSAGGQPVSMSNLKEVYEIAKQHGIFVVMDSARFCENAYFIKARDPK  239 (465)
T ss_dssp             TTTCBCHHHHHHHHHHHCG--GGEEEEEEESSBTTTTSBCCCHHHHHHHHHHHHHHTCCEEEECTTHHHHHHHHHHHCGG
T ss_pred             ccCccCHHHHHHHHHhhcc--ccccceeeccccccCceecCCHHHHHHHHHHHHHcCCEEEEECcchhhhhccccccccc
Confidence            4678999999999986422  12444444444443332    24689999999999999999999875433110      


Q ss_pred             -----chhhhhcCCCCccEEEECCccccCCCCceEEEEEecc
Q psy14299        144 -----KYSFVLKGINRANSVSWNPHKMLGAPLQCSILLIKEK  180 (448)
Q Consensus       144 -----~~~~~~~~~~~aD~~~~s~hK~l~~P~g~G~l~vr~~  180 (448)
                           ......+....+|+++++.||.+++|.+ |+++.++.
T Consensus       240 ~~~~~~~~i~~~~~~~~d~~s~s~~k~~~~~~~-g~l~~~~~  280 (465)
T d1ax4a_         240 YKNATIKEVIFDMYKYADALTMSAKKDPLLNIG-GLVAIRDN  280 (465)
T ss_dssp             GTTCCHHHHHHHHGGGCSEEEEETTSTTCCSSC-EEEEESSC
T ss_pred             ccccchhhhccccccccceeEeecccCcccccc-eeEeecch
Confidence                 0000000112379999999999887765 77777665

>d2v1pa1 c.67.1.2 (A:5-471) Tryptophan indol-lyase (tryptophanase) {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: Beta-eliminating lyases
domain: Tryptophan indol-lyase (tryptophanase)
species: Escherichia coli [TaxId: 562]

Probab=99.57  E-value=2.5e-14  Score=145.63  Aligned_cols=166  Identities=17%  Similarity=0.141  Sum_probs=110.2

Q ss_pred             cEEEeCcHHHHHHHHHHHHHHhcCCcccccCCCCCCCeEEEecCCCchHHHHHHHHhCCCCCcEEEEecCC---------
Q psy14299          4 KPFLLPGGSISNMYSICLARYRLDPDTKRKGLSHLPPLCMFTSEDSHYSMLKAAHWLGIGMDNVIRVKTNE---------   74 (448)
Q Consensus         4 ~g~~t~ggT~an~~al~~a~~~~~~~~~~~G~~~~~~~~Vl~~~~~H~s~~~~~~~~g~~~~~v~~v~~~~---------   74 (448)
                      .++++++||+||..++.+++.+....   ...  .....+..+...|..........|.   .++.++.+.         
T Consensus        91 ~~~~~~sGt~A~~~a~~~~~~~g~~~---~~~--~~~~~i~~~~~~~~~~~~~~~~~G~---~~~~~~~~~~~~~~~~~~  162 (467)
T d2v1pa1          91 YTIPTHQGRGAEQIYIPVLIKKREQE---KGL--DRSKMVAFSNYFFDTTQGHSQINGC---TVRNVYIKEAFDTGVRYD  162 (467)
T ss_dssp             EEEEECSSTTTHHHHHHHHHHHHHHH---HCC--CTTTCEEEESSCCHHHHHHHHHTTC---EEEECBCTTTTCTTSCCT
T ss_pred             EEEECCCCHHHHHHHHHHHhhccceE---ecC--CCCcEEEEecccccccHHHHHHcCC---eeeecccccccccccccc
Confidence            36899999999999999887652100   000  1223455666777777778888888   677776553         


Q ss_pred             -CCCcCHHHHHHHHHHhhhcCCCcEEEEEeccCCccc----cccCHHHHHHHHHHcCCEEEEecccccccccccchh---
Q psy14299         75 -RGQMICSFLEQTIQTSLAEKKIPLFVNATAGTTVLG----AFDPLDEIATVCEKYDLWMHVDACWGGSLIFSEKYS---  146 (448)
Q Consensus        75 -~g~id~e~Le~~l~~~~~~~~~~~lVv~~~~~t~tG----~~~~l~~I~~ia~~~g~~l~VD~A~~~~~~~~~~~~---  146 (448)
                       .+.+|+++|++.+++...  ..+.++++....+..|    ..+++++|.++|++||+++|+|+|+.++.......+   
T Consensus       163 ~~~~~d~~~l~~~i~~~~~--~~~~~i~~e~~~~~~gg~~~~~~~l~~i~~ia~~~g~~l~~D~a~~~~~~~~~~~~~~~  240 (467)
T d2v1pa1         163 FKGNFDLEGLERGIEEVGP--NNVPYIVATITSNSAGGQPVSLANLKAMYSIAKKYDIPVVMDSARFAENAYFIKQREAE  240 (467)
T ss_dssp             TTTCBCHHHHHHHHHHHCG--GGCCCEEEESSBCGGGCBCCCHHHHHHHHHHHHHTTCCEEEECTTHHHHHHHHHHHCGG
T ss_pred             cccCCCHHHHHHHHhhcCc--cccceeeecceeeccccccCCHHHHHHHHHHHHHcCCEEEEechhhhcccccccccccc
Confidence             357999999999986422  2344555555555444    235789999999999999999999876543211100   


Q ss_pred             --------hhhcCCCCccEEEECCccccCCCCceEEEEEecc
Q psy14299        147 --------FVLKGINRANSVSWNPHKMLGAPLQCSILLIKEK  180 (448)
Q Consensus       147 --------~~~~~~~~aD~~~~s~hK~l~~P~g~G~l~vr~~  180 (448)
                              ....-...+|+++++.||.+++|.| |++..+++
T Consensus       241 ~~~~~~~~i~~~~~~~~d~~s~s~~K~~~~~~g-g~i~~~~~  281 (467)
T d2v1pa1         241 YKDWTIEQITRETYKYADMLAMSAKKDAMVPMG-GLLCMKDD  281 (467)
T ss_dssp             GTTSCHHHHHHHHGGGCSEEEEESSSTTCCSSC-EEEEECSG
T ss_pred             ccCCcccccchhhcccCCEEEecCCCCCCCCCc-eeEEecch
Confidence                    0000112479999999999998754 55555554

>d2fnua1 c.67.1.4 (A:2-372) Spore coat polysaccharide biosynthesis protein C {Helicobacter pylori [TaxId: 210]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: GABA-aminotransferase-like
domain: Spore coat polysaccharide biosynthesis protein C
species: Helicobacter pylori [TaxId: 210]

Probab=99.55  E-value=1.9e-13  Score=134.88  Aligned_cols=156  Identities=12%  Similarity=0.070  Sum_probs=119.2

Q ss_pred             cEEEeCcHHHHHHHHHHHHHHhcCCcccccCCCCCCCeEEEecCCCchHHHHHHHHhCCCCCcEEEEecCCCCCcCHHHH
Q psy14299          4 KPFLLPGGSISNMYSICLARYRLDPDTKRKGLSHLPPLCMFTSEDSHYSMLKAAHWLGIGMDNVIRVKTNERGQMICSFL   83 (448)
Q Consensus         4 ~g~~t~ggT~an~~al~~a~~~~~~~~~~~G~~~~~~~~Vl~~~~~H~s~~~~~~~~g~~~~~v~~v~~~~~g~id~e~L   83 (448)
                      .++++++||.|+.+++.+....           ..+++.|+++..++.+...++...|.   .++.+.++++..++++++
T Consensus        48 ~ai~~~Sgt~Al~~al~al~~~-----------~~~~~eVi~p~~t~~a~~~ai~~~G~---~pv~vDi~~~~~~~~~~~  113 (371)
T d2fnua1          48 HALVFNSATSALLTLYRNFSEF-----------SADRNEIITTPISFVATANMLLESGY---TPVFAGIKNDGNIDELAL  113 (371)
T ss_dssp             EEEEESCHHHHHHHHHHHSSCC-----------CTTSCEEEECSSSCTHHHHHHHHTTC---EEEECCBCTTSSBCGGGS
T ss_pred             eEEEEecHHHHHHHHHHHhccc-----------CCCCCeeecccccccccceeeeccCc---ccccccccccccccchhh
Confidence            4689999999999988764332           12445799999999999999999999   788999998888888887


Q ss_pred             HHHHHHhhhcCCCcEEEEEeccCCccccccCHHHHHHHHHHcCCEEEEecccccccccccchhhhhcCCCCccEEEECCc
Q psy14299         84 EQTIQTSLAEKKIPLFVNATAGTTVLGAFDPLDEIATVCEKYDLWMHVDACWGGSLIFSEKYSFVLKGINRANSVSWNPH  163 (448)
Q Consensus        84 e~~l~~~~~~~~~~~lVv~~~~~t~tG~~~~l~~I~~ia~~~g~~l~VD~A~~~~~~~~~~~~~~~~~~~~aD~~~~s~h  163 (448)
                      ++.+.+      ++++|+++|   ..|...|+++|.++|+++|++++-|+||+.|...-....   ...+.+.++++...
T Consensus       114 ~~~~~~------~t~avi~vh---~~G~~~~~~~i~~~~~~~~i~lIEDaaqa~Ga~~~~~~~---G~~g~~~~~Sf~~~  181 (371)
T d2fnua1         114 EKLINE------RTKAIVSVD---YAGKSVEVESVQKLCKKHSLSFLSDSSHALGSEYQNKKV---GGFALASVFSFHAI  181 (371)
T ss_dssp             GGGCCT------TEEEEEEEC---GGGCCCCHHHHHHHHHHHTCEEEEECTTCTTCEETTEET---TSSSSEEEEECCTT
T ss_pred             hhhccc------hhhcccccc---ccccccccccccccccccchhhccchhhccCceeccccC---Cccccccccccccc
Confidence            766543      688888775   579999999999999999999999999999876433221   12233556777778


Q ss_pred             cccCCCCceEEEEEeccchhhhh
Q psy14299        164 KMLGAPLQCSILLIKEKGLLHQA  186 (448)
Q Consensus       164 K~l~~P~g~G~l~vr~~~~~~~~  186 (448)
                      |.+.+. +.|+++..+++.....
T Consensus       182 K~l~~g-~GG~i~t~~~~~~~~~  203 (371)
T d2fnua1         182 KPITTA-EGGAVVTNDSELHEKM  203 (371)
T ss_dssp             SSSCCS-SCEEEEESCHHHHHHH
T ss_pred             cccccc-cceEEEeechhhhhhc
Confidence            988764 4577777666544433

>d1rv3a_ c.67.1.4 (A:) Serine hydroxymethyltransferase {Rabbit (Oryctolagus cuniculus) [TaxId: 9986]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: GABA-aminotransferase-like
domain: Serine hydroxymethyltransferase
species: Rabbit (Oryctolagus cuniculus) [TaxId: 9986]

Probab=99.55  E-value=8.6e-13  Score=131.69  Aligned_cols=297  Identities=12%  Similarity=0.079  Sum_probs=183.7

Q ss_pred             eCcHHHHHHHHHHHHHHhcCCcccccCCCCCCCeEEEecCC---CchHHHH-------HHHHhCCCCCcEEEEecCCC-C
Q psy14299          8 LPGGSISNMYSICLARYRLDPDTKRKGLSHLPPLCMFTSED---SHYSMLK-------AAHWLGIGMDNVIRVKTNER-G   76 (448)
Q Consensus         8 t~ggT~an~~al~~a~~~~~~~~~~~G~~~~~~~~Vl~~~~---~H~s~~~-------~~~~~g~~~~~v~~v~~~~~-g   76 (448)
                      ..+|+.||+.+..+..+              |++.|+.-+.   .|.+--.       ...-...   +....+++++ +
T Consensus       103 p~SGs~An~av~~all~--------------pgD~im~~~l~~GGHlshg~~~~~~~~~~~~~~~---~~~~y~v~~~~~  165 (470)
T d1rv3a_         103 PYSGSPANFAVYTALVE--------------PHGRIMGLDLPDGGHLTHGFMTDKKKISATSIFF---ESMAYKVNPDTG  165 (470)
T ss_dssp             CSSHHHHHHHHHHHHTC--------------TTCEEEEECGGGTCCGGGCCBCSSCBCSHHHHHS---EEEEECBCTTTC
T ss_pred             ccCCccHHHHHHHHhcC--------------CCCeEeeeccccCCcccccccccCCCccccccee---EeeEEEEecccC
Confidence            46899999988877655              5666665322   3333210       0000112   4667777764 8


Q ss_pred             CcCHHHHHHHHHHhhhcCCCcEEEEEeccCCccccccCHHHHHHHHHHcCCEEEEecccccccccccchhhhhcCCCCcc
Q psy14299         77 QMICSFLEQTIQTSLAEKKIPLFVNATAGTTVLGAFDPLDEIATVCEKYDLWMHVDACWGGSLIFSEKYSFVLKGINRAN  156 (448)
Q Consensus        77 ~id~e~Le~~l~~~~~~~~~~~lVv~~~~~t~tG~~~~l~~I~~ia~~~g~~l~VD~A~~~~~~~~~~~~~~~~~~~~aD  156 (448)
                      .||.+++++..++.     +|++|++....  .-...|++++.++|++.|+++++|.||-+|......++.-+   +.+|
T Consensus       166 ~IDyd~l~~~a~~~-----kPklIi~G~S~--y~r~~d~~~~reIad~vga~l~~D~aH~aGLIA~g~~~sPl---~~aD  235 (470)
T d1rv3a_         166 YIDYDRLEENARLF-----HPKLIIAGTSC--YSRNLDYGRLRKIADENGAYLMADMAHISGLVVAGVVPSPF---EHCH  235 (470)
T ss_dssp             SBCHHHHHHHHHHH-----CCSEEEECCSS--CCSCCCHHHHHHHHHHTTCEEEEECTTTHHHHHHTSSCCGG---GTCS
T ss_pred             cccHHHHHHHHHhh-----CcceEeechhh--ccccCCHHHHHHHHhccCCeEEecchhhhhhccccccCChh---heee
Confidence            99999999999873     78888875543  44567999999999999999999999998877554443323   3579


Q ss_pred             EEEECCccccCCCCceEEEEEeccchhhhhccCCcccccccCcccccccCCCCCcccCCCCchhHHHHHHHHHhChHHHH
Q psy14299        157 SVSWNPHKMLGAPLQCSILLIKEKGLLHQANATAATYLFQQDKFYDVSFDTGDKSVQCGRKVDAFKLWLMWKARGNLGFR  236 (448)
Q Consensus       157 ~~~~s~hK~l~~P~g~G~l~vr~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~g~~  236 (448)
                      +++.+.||.|.+|.| |++++++..- .. .+....-+                                     ...+.
T Consensus       236 vvt~tTHKtlrGPrg-GiI~~~~~~~-~~-~~~~~~~~-------------------------------------~~~~~  275 (470)
T d1rv3a_         236 VVTTTTHKTLRGCRA-GMIFYRRGVR-SV-DPKTGKEI-------------------------------------LYNLE  275 (470)
T ss_dssp             EEEEESSGGGCCCSC-EEEEEECSBC-C--------CC-------------------------------------BCCHH
T ss_pred             eeeeehhhhccCCcc-eEEEEccccc-cc-cccccchh-------------------------------------HHHHH
Confidence            999999999999986 6666665310 00 00000000                                     00011


Q ss_pred             HHHHHhhhhccCCCccchhhhhhhhhhhhhhhhhhhhhhhccccccccccCCCCCccccccch-hhHHHHHHHHHhcCcc
Q psy14299        237 HFVDNAVDCSRGSMTFSTLLCFDLQGLLHQANATAATYLFQQDKFYDVSFDTGDKSVQCGRKV-DAFKLWLMWKARGNLG  315 (448)
Q Consensus       237 ~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~G  315 (448)
                      +.|++.+=                +                              -+|.++.. .+.+.++++......-
T Consensus       276 ~~i~~avF----------------P------------------------------g~qggph~~~IAa~Ava~~ea~~~~  309 (470)
T d1rv3a_         276 SLINSAVF----------------P------------------------------GLQGGPHNHAIAGVAVALKQAMTPE  309 (470)
T ss_dssp             HHHHHHHT----------------T------------------------------TTCCSCCHHHHHHHHHHHHHHTSHH
T ss_pred             HHHhhhcC----------------c------------------------------cccccchhhHHHHHHHHHHHhcChH
Confidence            11111000                0                              00111111 1223345566555555


Q ss_pred             HHHHHHHHHHHHHHHHHHhhcCCCeEEeccCCceeeEEEEeeccCCCccccchhhhhhhhhhhHHHHHHHHhCCcEEEEe
Q psy14299        316 FRHFVDNAVDCSRYFLSQISQRPGFRLVIPEFQCTNICFWFIPVSLRDKVEDETWWSTLSKVAPRIKEKLVLGGTLMIGY  395 (448)
Q Consensus       316 ~~~~~~~~~~l~~~~~~~L~~~pg~~l~~~~~~~~~v~f~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~L~~~g~~~~~~  395 (448)
                      +++..++..++++.+.+.|.+. |++++.+....+.+.+.+.+.++++               .+..+.|.+.| +.+.-
T Consensus       310 fk~Ya~qvv~NAk~La~~L~~~-G~~v~~ggTdnHlvlvdl~~~g~~g---------------~~ae~~Le~~g-I~~Nk  372 (470)
T d1rv3a_         310 FKEYQRQVVANCRALSAALVEL-GYKIVTGGSDNHLILVDLRSKGTDG---------------GRAEKVLEACS-IACNK  372 (470)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHT-TCEEGGGSCSSSEEEEEGGGGTCCH---------------HHHHHHHHHTT-EECEE
T ss_pred             HHHHHHHHHHHHHHHHHHHHhC-CceeccCCCCCceEEEeecccCCcH---------------HHHHHHHHHcC-cEECC
Confidence            6778888999999999999998 9999844456677777665555542               25556677778 55543


Q ss_pred             eecCC-c--ccccEEEEEecC--CCCCCHHHHHHHHHHHHHHHH
Q psy14299        396 QPLQH-R--NLHNFFRLVTTC--HPASSRQDMDYAIDQIELRGA  434 (448)
Q Consensus       396 ~~~~g-~--~~~~~lRis~~~--~~~~t~edid~l~~al~~~~~  434 (448)
                      ....+ +  ..+..+||+.-.  .....++|+.++.+.|.++.+
T Consensus       373 n~iP~D~~~~~~sGiRiGT~alTtrG~~e~dm~~iA~~I~~~l~  416 (470)
T d1rv3a_         373 NTCPGDKSALRPSGLRLGTPALTSRGLLEKDFQKVAHFIHRGIE  416 (470)
T ss_dssp             ECCSSCSCTTSCCEEEEECHHHHHTTCCHHHHHHHHHHHHHHHH
T ss_pred             CcCCCCCCCCCCCeeEecCHHHHhCCCCHHHHHHHHHHHHHHHH
Confidence            32222 1  113579998731  234577999999998888764

>d1b9ha_ c.67.1.4 (A:) 3-amino-5-hydroxybenzoic acid synthase (AHBA synthase) {Amycolatopsis mediterranei [TaxId: 33910]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: GABA-aminotransferase-like
domain: 3-amino-5-hydroxybenzoic acid synthase (AHBA synthase)
species: Amycolatopsis mediterranei [TaxId: 33910]

Probab=99.53  E-value=8.3e-13  Score=130.92  Aligned_cols=153  Identities=11%  Similarity=0.110  Sum_probs=117.5

Q ss_pred             cEEEeCcHHHHHHHHHHHHHHhcCCcccccCCCCCCCeEEEecCCCchHHHHHHHHhCCCCCcEEEEecCC-CCCcCHHH
Q psy14299          4 KPFLLPGGSISNMYSICLARYRLDPDTKRKGLSHLPPLCMFTSEDSHYSMLKAAHWLGIGMDNVIRVKTNE-RGQMICSF   82 (448)
Q Consensus         4 ~g~~t~ggT~an~~al~~a~~~~~~~~~~~G~~~~~~~~Vl~~~~~H~s~~~~~~~~g~~~~~v~~v~~~~-~g~id~e~   82 (448)
                      .+++|++||.|+.+|+.++--             .+++.|+++..++.+...++...|.   .++.++.++ ++.+|++.
T Consensus        51 ~~v~~~SGt~Al~lal~~l~~-------------~~gdeVi~p~~t~~a~~~ai~~~g~---~p~~~d~~~~~~~~d~~~  114 (384)
T d1b9ha_          51 HALAVTNGTHALELALQVMGV-------------GPGTEVIVPAFTFISSSQAAQRLGA---VTVPVDVDAATYNLDPEA  114 (384)
T ss_dssp             EEEEESCHHHHHHHHHHHTTC-------------CTTCEEEEESSSCTHHHHHHHHTTC---EEEEECBCTTTCCBCHHH
T ss_pred             eEEEeCCHHHHHHHHHHHcCC-------------CCCCEEEEecccccccccccccccc---ccccccccccccccchhh
Confidence            468999999999999876422             2677899999999999999999999   777888765 57899999


Q ss_pred             HHHHHHHhhhcCCCcEEEEEeccCCccccccCHHHHHHHHHHcCCEEEEecccccccccccchhhhhcCCCCccEEEECC
Q psy14299         83 LEQTIQTSLAEKKIPLFVNATAGTTVLGAFDPLDEIATVCEKYDLWMHVDACWGGSLIFSEKYSFVLKGINRANSVSWNP  162 (448)
Q Consensus        83 Le~~l~~~~~~~~~~~lVv~~~~~t~tG~~~~l~~I~~ia~~~g~~l~VD~A~~~~~~~~~~~~~~~~~~~~aD~~~~s~  162 (448)
                      +++.+.+      +++.|++   ....|...|+++|.++|+++|++++.|+||+.|...-....   ...+.+.++++..
T Consensus       115 ~~~~i~~------~tk~i~~---~~~~g~~~d~~~i~~~~~~~~i~lieD~a~a~ga~~~g~~~---g~~g~~~~~Sf~~  182 (384)
T d1b9ha_         115 VAAAVTP------RTKVIMP---VHMAGLMADMDALAKISADTGVPLLQDAAHAHGARWQGKRV---GELDSIATFSFQN  182 (384)
T ss_dssp             HHHHCCT------TEEEECC---BCGGGCCCCHHHHHHHHHHHTCCBCEECTTCTTCEETTEEG---GGSSSCEEEECCT
T ss_pred             hcccccc------ccccccc---ccccccccccccchhhhhhhhhhhhhhhceecccccCCEec---Ccccccceecccc
Confidence            9998754      4667654   56678899999999999999999999999998876432211   1122355777788


Q ss_pred             ccccCCCCceEEEEEeccchhhh
Q psy14299        163 HKMLGAPLQCSILLIKEKGLLHQ  185 (448)
Q Consensus       163 hK~l~~P~g~G~l~vr~~~~~~~  185 (448)
                      .|.+.+.. .|++++++++....
T Consensus       183 ~K~i~~g~-GG~i~t~~~~~~~~  204 (384)
T d1b9ha_         183 GKLMTAGE-GGAVVFPDGETEKY  204 (384)
T ss_dssp             TSSSCSSS-CEEEEECTTCHHHH
T ss_pred             cccccccc-cchhhhhhHHHHHH
Confidence            99987643 46666767655433

>d1w23a_ c.67.1.4 (A:) Phosphoserine aminotransferase, PSAT {Bacillus alcalophilus [TaxId: 1445]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: GABA-aminotransferase-like
domain: Phosphoserine aminotransferase, PSAT
species: Bacillus alcalophilus [TaxId: 1445]

Probab=99.52  E-value=1e-14  Score=142.69  Aligned_cols=144  Identities=8%  Similarity=-0.160  Sum_probs=89.5

Q ss_pred             cEEEeCcHHHHHHHHHHHHHHhcCCcccccCCCCCCCeEEEecCCCchHHHHHHHHhCCCCCcEEEEecCCCCCcCHHHH
Q psy14299          4 KPFLLPGGSISNMYSICLARYRLDPDTKRKGLSHLPPLCMFTSEDSHYSMLKAAHWLGIGMDNVIRVKTNERGQMICSFL   83 (448)
Q Consensus         4 ~g~~t~ggT~an~~al~~a~~~~~~~~~~~G~~~~~~~~Vl~~~~~H~s~~~~~~~~g~~~~~v~~v~~~~~g~id~e~L   83 (448)
                      ..+|++|+++++..+.......             +++.+++.. .|......+.........+..+.........++.+
T Consensus        68 ~i~~~~gt~~~~~~~~~~~~~~-------------~~~~v~~~~-~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  133 (360)
T d1w23a_          68 QILFLQGGASLQFTMLPMNLLT-------------KGTIGNYVL-TGSWSEKALKEAKLLGETHIAASTKANSYQSIPDF  133 (360)
T ss_dssp             EEEEESSHHHHHHHHHHHHHCC-------------TTCEEEEEE-CSHHHHHHHHHHHTTSEEEEEEECGGGTSCSCCCG
T ss_pred             EEEEeCCcHHHHHHHHHhhhcc-------------cCcccceee-ccchhhhhHHHHHHhhhcceeeccccccccchhhh
Confidence            4788888888877665554432             344444443 34444444433322221344444333333343433


Q ss_pred             HHHHHHhhhcCCCcEEEEEeccCCccccccCHHHHHHHHHHcCCEEEEecccccccccccchhhhhcCCCCccEEEECCc
Q psy14299         84 EQTIQTSLAEKKIPLFVNATAGTTVLGAFDPLDEIATVCEKYDLWMHVDACWGGSLIFSEKYSFVLKGINRANSVSWNPH  163 (448)
Q Consensus        84 e~~l~~~~~~~~~~~lVv~~~~~t~tG~~~~l~~I~~ia~~~g~~l~VD~A~~~~~~~~~~~~~~~~~~~~aD~~~~s~h  163 (448)
                      +..+          +.+.+++.+|.+|...|+++|+++||++|++++||++++.+..+++...     + .+|+++++.|
T Consensus       134 ~~~~----------~~~~~~~~~~~tg~~~~~~~i~~~~~~~g~l~ivDavqs~g~~~id~~~-----~-~vd~~~~~~~  197 (360)
T d1w23a_         134 SEFQ----------LNENDAYLHITSNNTIYGTQYQNFPEINHAPLIADMSSDILSRPLKVNQ-----F-GMIYAGAQKN  197 (360)
T ss_dssp             GGCC----------CCTTEEEEEEESEETTTTEECSSCCCCCSSCEEEECTTTTTSSCCCGGG-----C-SEEEEETTTT
T ss_pred             hhcc----------cccccceeEecCCccccceeeeeccccceeeEEeecccccccccccccc-----c-cceEEeeccc
Confidence            3322          2233567788899999999999999999999999999999998776532     2 3677777777


Q ss_pred             cccCCCCceEEEEEec
Q psy14299        164 KMLGAPLQCSILLIKE  179 (448)
Q Consensus       164 K~l~~P~g~G~l~vr~  179 (448)
                      |+  .|++.|+++.+.
T Consensus       198 k~--~~~~~~~~~~~~  211 (360)
T d1w23a_         198 LG--PSGVTVVIVKKD  211 (360)
T ss_dssp             TS--CTTCEEEEEEHH
T ss_pred             cc--cCCcceeeEech
Confidence            64  455666665544

>d1o4sa_ c.67.1.1 (A:) Aspartate aminotransferase, AAT {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: AAT-like
domain: Aspartate aminotransferase, AAT
species: Thermotoga maritima [TaxId: 2336]

Probab=99.51  E-value=6.9e-13  Score=130.57  Aligned_cols=153  Identities=12%  Similarity=-0.010  Sum_probs=107.7

Q ss_pred             cEEEeCcHHHHHHHHHHHHHHhcCCcccccCCCCCCCeEEEecCCCchHHHHHHHHhCCCCCcEEEEecCC--CCCcCHH
Q psy14299          4 KPFLLPGGSISNMYSICLARYRLDPDTKRKGLSHLPPLCMFTSEDSHYSMLKAAHWLGIGMDNVIRVKTNE--RGQMICS   81 (448)
Q Consensus         4 ~g~~t~ggT~an~~al~~a~~~~~~~~~~~G~~~~~~~~Vl~~~~~H~s~~~~~~~~g~~~~~v~~v~~~~--~g~id~e   81 (448)
                      ..++|+|+++++..++.+..+              +++.|+++...+..........+.   ....++.++  ++.+|.+
T Consensus        90 ~i~~t~G~~~al~~~~~~l~~--------------~gd~vlv~~P~y~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~  152 (375)
T d1o4sa_          90 QVVVTNGAKQALFNAFMALLD--------------PGDEVIVFSPVWVSYIPQIILAGG---TVNVVETFMSKNFQPSLE  152 (375)
T ss_dssp             GEEEESHHHHHHHHHHHHHCC--------------TTCEEEEEESCCTTHHHHHHHTTC---EEEEEECCGGGTTCCCHH
T ss_pred             cccccCcHHHHHHHHHHHHhC--------------CCCEEEEccCccccchhhhhcccc---ccccccccccccccchhH
Confidence            468899999998887776654              566788888888888888888887   566666654  4577888


Q ss_pred             HHHHHHHHhhhcCCCcEEEEEeccCCccccccC---HHHHHHHHHHcCCEEEEecccccccccccchhh-hhcCCCCccE
Q psy14299         82 FLEQTIQTSLAEKKIPLFVNATAGTTVLGAFDP---LDEIATVCEKYDLWMHVDACWGGSLIFSEKYSF-VLKGINRANS  157 (448)
Q Consensus        82 ~Le~~l~~~~~~~~~~~lVv~~~~~t~tG~~~~---l~~I~~ia~~~g~~l~VD~A~~~~~~~~~~~~~-~~~~~~~aD~  157 (448)
                      .++....+      ++++++++.++|+||...+   +++|.++|++|+++++.|.++............ ...+...--+
T Consensus       153 ~~~~~~~~------~~~~~~l~nP~NPTG~~~s~~~~~~i~~~a~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~~i  226 (375)
T d1o4sa_         153 EVEGLLVG------KTKAVLINSPNNPTGVVYRREFLEGLVRLAKKRNFYIISDEVYDSLVYTDEFTSILDVSEGFDRIV  226 (375)
T ss_dssp             HHHHTCCT------TEEEEEEESSCTTTCCCCCHHHHHHHHHHHHHHTCEEEEECTTTTSBCSSCCCCHHHHCSSSTTEE
T ss_pred             HHHHhhcc------CccEEEEeCCCCCccCCCCHHHHHHHHHhHHHcCCceehHhhhccccccccccccccccCCCCCEE
Confidence            87775543      5789999999999998754   677888999999999999987765442211110 0111111236


Q ss_pred             EEECCccccCCC-CceEEEEEec
Q psy14299        158 VSWNPHKMLGAP-LQCSILLIKE  179 (448)
Q Consensus       158 ~~~s~hK~l~~P-~g~G~l~vr~  179 (448)
                      +..++.|.++.| .-+|+++..+
T Consensus       227 ~~~S~SK~~~l~G~R~G~~~~~~  249 (375)
T d1o4sa_         227 YINGFSKSHSMTGWRVGYLISSE  249 (375)
T ss_dssp             EEEESTTTTTCGGGCCEEEECCH
T ss_pred             EEeechhhccCCccccccccccc
Confidence            667889988755 4566655433

>d2a7va1 c.67.1.4 (A:26-488) Serine hydroxymethyltransferase {Human (Homo sapiens), mitochondrial [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: GABA-aminotransferase-like
domain: Serine hydroxymethyltransferase
species: Human (Homo sapiens), mitochondrial [TaxId: 9606]

Probab=99.51  E-value=3.9e-13  Score=133.77  Aligned_cols=296  Identities=16%  Similarity=0.126  Sum_probs=174.1

Q ss_pred             EeCcHHHHHHHHHHHHHHhcCCcccccCCCCCCCeEEEecCC---CchHHH-----HHHHHhCCCCCcEEEEecC-CCCC
Q psy14299          7 LLPGGSISNMYSICLARYRLDPDTKRKGLSHLPPLCMFTSED---SHYSML-----KAAHWLGIGMDNVIRVKTN-ERGQ   77 (448)
Q Consensus         7 ~t~ggT~an~~al~~a~~~~~~~~~~~G~~~~~~~~Vl~~~~---~H~s~~-----~~~~~~g~~~~~v~~v~~~-~~g~   77 (448)
                      =..+|+.||+.+..+..+              |++.|+.-+.   .|.|--     ......|... ++...+.+ +++.
T Consensus        98 qp~SGs~An~av~~all~--------------pgD~Im~l~l~~GGHlshg~~~~~~~~~~~g~~~-~~~~Y~~d~~~~~  162 (463)
T d2a7va1          98 QPYSGSPANLAVYTALLQ--------------PHDRIMGLDLPDGGHLTHGYMSDVKRISATSIFF-ESMPYKLNPKTGL  162 (463)
T ss_dssp             CCSSHHHHHHHHHHHHCC--------------SCEECCC--------------------------------CCBCTTTCS
T ss_pred             cccccHHHHHHHHHHHcC--------------CCceEEeeccCcCcccccccccccccccceeeEe-eeeeeeccCCCCc
Confidence            356899999888776654              5555543322   233322     1122233311 23444455 4689


Q ss_pred             cCHHHHHHHHHHhhhcCCCcEEEEEeccCCccccccCHHHHHHHHHHcCCEEEEecccccccccccchhhhhcCCCCccE
Q psy14299         78 MICSFLEQTIQTSLAEKKIPLFVNATAGTTVLGAFDPLDEIATVCEKYDLWMHVDACWGGSLIFSEKYSFVLKGINRANS  157 (448)
Q Consensus        78 id~e~Le~~l~~~~~~~~~~~lVv~~~~~t~tG~~~~l~~I~~ia~~~g~~l~VD~A~~~~~~~~~~~~~~~~~~~~aD~  157 (448)
                      ||.+++++..++.     +|++|++....  .-...|++++.++|++.|+++++|.||-+|......++.-+   +.+|+
T Consensus       163 IDyd~~~~~a~~~-----kPklIi~G~S~--y~r~~d~~~~reIad~vga~l~~D~aH~aGLIA~g~~~sP~---~~aDv  232 (463)
T d2a7va1         163 IDYNQLALTARLF-----RPRLIIAGTSA--YARLIDYARMREVCDEVKAHLLADMAHISGLVAAKVIPSPF---KHADI  232 (463)
T ss_dssp             BCHHHHHHHHHHH-----CCSEEEECCSS--CCSCCCHHHHHHHHHHTTCEEEEECGGGHHHHHTTSSCCGG---GTCSE
T ss_pred             CcHHHHHHHHhhc-----CCceEEecccc--cccccCHHHHHHHhhcccceEEechhhhhHHhhhhhhcChh---hhhhh
Confidence            9999999999873     78888875543  44567999999999999999999999998877544433322   35899


Q ss_pred             EEECCccccCCCCceEEEEEeccchhhhhccCCc-----ccccccCcccccccCCCCCcccCCCCchhHHHHHHHHHhCh
Q psy14299        158 VSWNPHKMLGAPLQCSILLIKEKGLLHQANATAA-----TYLFQQDKFYDVSFDTGDKSVQCGRKVDAFKLWLMWKARGN  232 (448)
Q Consensus       158 ~~~s~hK~l~~P~g~G~l~vr~~~~~~~~~~~~~-----~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~  232 (448)
                      ++.+.||.|.+|. .|++++++......  ....     .|-..-+  ....+     +++++....             
T Consensus       233 vt~tTHKTlrGPr-gGiIl~~~~~~~~~--~~~~~~~~~~~~~~i~--~avFP-----g~qggph~h-------------  289 (463)
T d2a7va1         233 VTTTTHKTLRGAR-SGLIFYRKGVKAVD--PKTGREIPYTFEDRIN--FAVFP-----SLQGGPHNH-------------  289 (463)
T ss_dssp             EEEESSGGGCSCS-CEEEEEECSEEEEE--TTTEEEEECCCHHHHH--HHHTT-----TTCCSCCHH-------------
T ss_pred             hhchhhhhhcCCC-ceEEEEcccccccc--cccCccchhHHHHHhh--hhcCc-----ccchhhhhh-------------
Confidence            9999999999998 45555655311000  0000     0000000  00000     011111111             


Q ss_pred             HHHHHHHHHhhhhccCCCccchhhhhhhhhhhhhhhhhhhhhhhccccccccccCCCCCccccccchhhHHHHHHHHHhc
Q psy14299        233 LGFRHFVDNAVDCSRGSMTFSTLLCFDLQGLLHQANATAATYLFQQDKFYDVSFDTGDKSVQCGRKVDAFKLWLMWKARG  312 (448)
Q Consensus       233 ~g~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  312 (448)
                                                                                         -+.+.++++....
T Consensus       290 -------------------------------------------------------------------~iAa~Ava~~ea~  302 (463)
T d2a7va1         290 -------------------------------------------------------------------AIAAVAVALKQAC  302 (463)
T ss_dssp             -------------------------------------------------------------------HHHHHHHHHHHHH
T ss_pred             -------------------------------------------------------------------hHHHHHHHHHHhc
Confidence                                                                               0223344555555


Q ss_pred             CccHHHHHHHHHHHHHHHHHHhhcCCCeEEeccCCceeeEEEEeeccCCCccccchhhhhhhhhhhHHHHHHHHhCCcEE
Q psy14299        313 NLGFRHFVDNAVDCSRYFLSQISQRPGFRLVIPEFQCTNICFWFIPVSLRDKVEDETWWSTLSKVAPRIKEKLVLGGTLM  392 (448)
Q Consensus       313 ~~G~~~~~~~~~~l~~~~~~~L~~~pg~~l~~~~~~~~~v~f~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~L~~~g~~~  392 (448)
                      ..-+++..++..++++.|.+.|.+. |++++....+.+.+.+.+.+.++++               ....+.|.+.| +.
T Consensus       303 ~~~fk~Ya~qVv~NAk~La~~L~~~-G~~vv~ggTdnHlvlvdl~~~~~~G---------------~~ae~~Le~~g-I~  365 (463)
T d2a7va1         303 TPMFREYSLQVLKNARAMADALLER-GYSLVSGGTDNHLVLVDLRPKGLDG---------------ARAERVLELVS-IT  365 (463)
T ss_dssp             SHHHHHHHHHHHHHHHHHHHHHHHT-TCEEGGGSCSSSEEEEECTTTTCCH---------------HHHHHHHHHTT-EE
T ss_pred             CchHHHHHHHHHHHHHHHHHHHHhC-CCeeecCCCCCceeeeeccccCCCH---------------HHHHHHHHhcc-Cc
Confidence            5567778888899999999999998 9999844456677777766655542               25566777778 55


Q ss_pred             EEeeecCC-c--ccccEEEEEecC--CCCCCHHHHHHHHHHHHHHHH
Q psy14299        393 IGYQPLQH-R--NLHNFFRLVTTC--HPASSRQDMDYAIDQIELRGA  434 (448)
Q Consensus       393 ~~~~~~~g-~--~~~~~lRis~~~--~~~~t~edid~l~~al~~~~~  434 (448)
                      +.-....+ +  ..+..||++...  .-...++|+.++.+.|.++..
T Consensus       366 ~Nkn~iP~D~~~~~~sGiRiGT~a~TtrG~~e~dm~~iA~~I~~~l~  412 (463)
T d2a7va1         366 ANKNTCPGDRSAITPGGLRLGAPALTSRQFREDDFRRVVDFIDEGVN  412 (463)
T ss_dssp             CEEECCTTCCCSSSCSEEEEESHHHHHTTCCHHHHHHHHHHHHHHHH
T ss_pred             cCCccCCCCCCCCCCCceEeCCHHHHhCCCCHHHHHHHHHHHHHHHH
Confidence            55333222 1  113579999731  122456899999988887664

>d1u08a_ c.67.1.1 (A:) Putative methionine aminotransferase YdbL {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: AAT-like
domain: Putative methionine aminotransferase YdbL
species: Escherichia coli [TaxId: 562]

Probab=99.51  E-value=4e-13  Score=132.94  Aligned_cols=283  Identities=8%  Similarity=-0.031  Sum_probs=177.5

Q ss_pred             cEEEeCcHHHHHHHHHHHHHHhcCCcccccCCCCCCCeEEEecCCCchHHHHHHHHhCCCCCcEEEEecCC-CCCcCHHH
Q psy14299          4 KPFLLPGGSISNMYSICLARYRLDPDTKRKGLSHLPPLCMFTSEDSHYSMLKAAHWLGIGMDNVIRVKTNE-RGQMICSF   82 (448)
Q Consensus         4 ~g~~t~ggT~an~~al~~a~~~~~~~~~~~G~~~~~~~~Vl~~~~~H~s~~~~~~~~g~~~~~v~~v~~~~-~g~id~e~   82 (448)
                      ..++|+|+++++..++.+...              +++.|+++...++.........|.   .+..++.++ ++.+|+++
T Consensus        89 ~I~vt~G~~~al~~~~~~l~~--------------~gd~vl~~~p~y~~~~~~~~~~g~---~~~~~~~~~~~~~~d~~~  151 (382)
T d1u08a_          89 DITVTAGATEALYAAITALVR--------------NGDEVICFDPSYDSYAPAIALSGG---IVKRMALQPPHFRVDWQE  151 (382)
T ss_dssp             TEEEESSHHHHHHHHHHHHCC--------------TTCEEEEEESCCTTHHHHHHHTTC---EEEEEECCTTTCCCCHHH
T ss_pred             eEEeccchHHHHHHHHhhccc--------------ccceEEEecccccchhhhhhhccc---cceecccccccccCCHHH
Confidence            478999999999888877654              567788888889889888888887   566677655 45789999


Q ss_pred             HHHHHHHhhhcCCCcEEEEEeccCCccccccC---HHHHHHHHHHcCCEEEEecccccccccccchhhh--hcCCCCccE
Q psy14299         83 LEQTIQTSLAEKKIPLFVNATAGTTVLGAFDP---LDEIATVCEKYDLWMHVDACWGGSLIFSEKYSFV--LKGINRANS  157 (448)
Q Consensus        83 Le~~l~~~~~~~~~~~lVv~~~~~t~tG~~~~---l~~I~~ia~~~g~~l~VD~A~~~~~~~~~~~~~~--~~~~~~aD~  157 (448)
                      +++.+.+      ++++++++.++|+||.+.+   +++|.++|++++++++.|..+.............  ......--+
T Consensus       152 l~~~~~~------~~~~i~l~~P~NPtG~v~~~~~~~~l~~~~~~~~~~ii~d~~~~~~~~~~~~~~~~~~~~~~~~~~i  225 (382)
T d1u08a_         152 FAALLSE------RTRLVILNTPHNPSATVWQQADFAALWQAIAGHEIFVISDEVYEHINFSQQGHASVLAHPQLRERAV  225 (382)
T ss_dssp             HHHHCCT------TEEEEEEESSCTTTCCCCCHHHHHHHHHHHTTSCCEEEEECTTTTCBCCSSCCCCGGGSHHHHTTEE
T ss_pred             Hhhhhcc------CccEEEECCCCcccccccccccchhhhhhhccccceeeeecchhhccccccccccccccccccCcEE
Confidence            9887754      5889999999999998866   5667788889999999998876543321110000  000000126


Q ss_pred             EEECCccccCCC-CceEEEEEeccchhhhhccCCcccccccCcccccccCCCCCcccCCCCchhHHHHHHHHHhChHHHH
Q psy14299        158 VSWNPHKMLGAP-LQCSILLIKEKGLLHQANATAATYLFQQDKFYDVSFDTGDKSVQCGRKVDAFKLWLMWKARGNLGFR  236 (448)
Q Consensus       158 ~~~s~hK~l~~P-~g~G~l~vr~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~g~~  236 (448)
                      +..+..|.++.| .-+|+++. ++..+...... ...                                           
T Consensus       226 ~~~s~SK~~~~pG~RiG~~v~-~~~~~~~~~~~-~~~-------------------------------------------  260 (382)
T d1u08a_         226 AVSSFGKTYHMTGWKVGYCVA-PAPISAEIRKV-HQY-------------------------------------------  260 (382)
T ss_dssp             EEEEHHHHTTCGGGCCEEEEC-CHHHHHHHHHH-HHH-------------------------------------------
T ss_pred             EEeeccccccCCcccchhhhc-cchhHHHHHhh-hcc-------------------------------------------
Confidence            677788887766 55777665 33332221100 000                                           


Q ss_pred             HHHHHhhhhccCCCccchhhhhhhhhhhhhhhhhhhhhhhccccccccccCCCCCccccccchhhHHHHHHHHHhcCccH
Q psy14299        237 HFVDNAVDCSRGSMTFSTLLCFDLQGLLHQANATAATYLFQQDKFYDVSFDTGDKSVQCGRKVDAFKLWLMWKARGNLGF  316 (448)
Q Consensus       237 ~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~  316 (448)
                                                                             ...|.+.+.+..+..+++. +.+.+
T Consensus       261 -------------------------------------------------------~~~~~~~~~q~a~~~~l~~-~~~~~  284 (382)
T d1u08a_         261 -------------------------------------------------------LTFSVNTPAQLALADMLRA-EPEHY  284 (382)
T ss_dssp             -------------------------------------------------------HTSSCCHHHHHHHHHHHHH-CTHHH
T ss_pred             -------------------------------------------------------ccccccccccccccccccc-chHHH
Confidence                                                                   0011222223333333432 23456


Q ss_pred             HHHHHHHHHHHHHHHHHhhcCCCeEEeccCCceeeEEEEeeccCCCccccchhhhhhhhhhhHHHHHHHHh-CCcEEEEe
Q psy14299        317 RHFVDNAVDCSRYFLSQISQRPGFRLVIPEFQCTNICFWFIPVSLRDKVEDETWWSTLSKVAPRIKEKLVL-GGTLMIGY  395 (448)
Q Consensus       317 ~~~~~~~~~l~~~~~~~L~~~pg~~l~~~~~~~~~v~f~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~L~~-~g~~~~~~  395 (448)
                      +.+.++..+.++.+.+.+... |+++.  +|..+.+.|.-.|. ....            ...++.++|++ .| +.+.|
T Consensus       285 ~~~~~~~~~~~~~l~~~~~~~-g~~~~--~p~gg~~~~~~~~~-~~~~------------d~~e~~~~ll~e~g-V~v~P  347 (382)
T d1u08a_         285 LALPDFYRQKRDILVNALNES-RLEIL--PCEGTYFLLVDYSA-VSTL------------DDVEFCQWLTQEHG-VAAIP  347 (382)
T ss_dssp             HTHHHHHHHHHHHHHHHTTSS-SCEEC--CCCBSSEEEEECTT-TCCS------------CHHHHHHHHHHHSC-EECEE
T ss_pred             HHHHHHHHhhhhhhhhhhccC-CcEEe--cCCceEEEEEecCC-CCCC------------CHHHHHHHHHHHCC-EEEEc
Confidence            667777888888888888765 89874  56777666533231 1100            12367777754 57 55555


Q ss_pred             eecCCc--ccccEEEEEecCCCCCCHHHHHHHHHHHHH
Q psy14299        396 QPLQHR--NLHNFFRLVTTCHPASSRQDMDYAIDQIEL  431 (448)
Q Consensus       396 ~~~~g~--~~~~~lRis~~~~~~~t~edid~l~~al~~  431 (448)
                      +...+.  ...+++|+|++    +++|+++..++.|++
T Consensus       348 G~~F~~~~~~~~~~Ris~~----~~~e~l~~al~RL~~  381 (382)
T d1u08a_         348 LSVFCADPFPHKLIRLCFA----KKESTLLAAAERLRQ  381 (382)
T ss_dssp             GGGGCSSCCCSCEEEEECC----SCHHHHHHHHHHHTT
T ss_pred             chhhCCCCCCCCEEEEEEe----CCHHHHHHHHHHHhC
Confidence            544322  23479999984    367777777666654

>d2r5ea1 c.67.1.1 (A:12-429) Kynurenine--oxoglutarate transaminase I {Yellowfever mosquito (Aedes aegypti) [TaxId: 7159]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: AAT-like
domain: Kynurenine--oxoglutarate transaminase I
species: Yellowfever mosquito (Aedes aegypti) [TaxId: 7159]

Probab=99.51  E-value=8.1e-13  Score=132.25  Aligned_cols=153  Identities=11%  Similarity=-0.018  Sum_probs=110.5

Q ss_pred             cEEEeCcHHHHHHHHHHHHHHhcCCcccccCCCCCCCeEEEecCCCchHHHHHHHHhCCCCCcEEEEecCCC--------
Q psy14299          4 KPFLLPGGSISNMYSICLARYRLDPDTKRKGLSHLPPLCMFTSEDSHYSMLKAAHWLGIGMDNVIRVKTNER--------   75 (448)
Q Consensus         4 ~g~~t~ggT~an~~al~~a~~~~~~~~~~~G~~~~~~~~Vl~~~~~H~s~~~~~~~~g~~~~~v~~v~~~~~--------   75 (448)
                      ..++|+|+++++..++.+...              +++.|+++...++.+...+...|.   .++.++.+++        
T Consensus        92 ~I~it~G~~~al~~~~~~l~~--------------~gd~vlv~~P~y~~~~~~~~~~g~---~~~~v~~~~~~~~~~~~~  154 (418)
T d2r5ea1          92 EVLVTVGAYEALYATIQGHVD--------------EGDEVIIIEPFFDCYEPMVKAAGG---IPRFIPLKPNKTGGTISS  154 (418)
T ss_dssp             SEEEESHHHHHHHHHHHHHCC--------------TTCEEEEEESCCTTHHHHHHHTTC---EEEEEECEESCCSSCEEG
T ss_pred             eEEEcCCCchhhhhhhhhccc--------------cccceeccccccchhhHHHHHcCC---eEEEEEecccccccchhh
Confidence            479999999998888777654              677889999999999999999998   7788877543        


Q ss_pred             --CCcCHHHHHHHHHHhhhcCCCcEEEEEeccCCccccccC---HHHHHHHHHHcCCEEEEecccccccccccchhh--h
Q psy14299         76 --GQMICSFLEQTIQTSLAEKKIPLFVNATAGTTVLGAFDP---LDEIATVCEKYDLWMHVDACWGGSLIFSEKYSF--V  148 (448)
Q Consensus        76 --g~id~e~Le~~l~~~~~~~~~~~lVv~~~~~t~tG~~~~---l~~I~~ia~~~g~~l~VD~A~~~~~~~~~~~~~--~  148 (448)
                        ..++++.+++...+      .+++++++.++|+||.+.+   +++|+++|++||++++.|.+|............  .
T Consensus       155 ~~~~~~~~~~~~~~~~------~~~~~~i~~p~NPtG~~~s~e~~~~l~~~a~~~~~~iI~De~y~~~~~~~~~~~s~~~  228 (418)
T d2r5ea1         155 ADWVLDNNELEALFNE------KTKMIIINTPHNPLGKVMDRAELEVVANLCKKWNVLCVSDEVYEHMVFEPFEHIRICT  228 (418)
T ss_dssp             GGEECCHHHHHHHCCT------TEEEEEEESSCTTTCCCCCHHHHHHHHHHHHHHTCEEEEECTTTTCBCTTCCCCCGGG
T ss_pred             hhhhhhHHHHhhhhhc------cccceecCCcCccccccccHHHHHHHhhhhhcCCeeeecccchhhhccCCCccccccc
Confidence              34677777766533      5889999999999998766   566888999999999999998765442111110  0


Q ss_pred             hcCCCCccEEEECCccccCCC-CceEEEEEec
Q psy14299        149 LKGINRANSVSWNPHKMLGAP-LQCSILLIKE  179 (448)
Q Consensus       149 ~~~~~~aD~~~~s~hK~l~~P-~g~G~l~vr~  179 (448)
                      +.+...--.++.|..|.++.| .-+|+++..+
T Consensus       229 ~~~~~~~~i~~~S~SK~~~~pGlRiG~~~~~~  260 (418)
T d2r5ea1         229 LPGMWERTITIGSAGKTFSLTGWKIGWAYGPE  260 (418)
T ss_dssp             STTTGGGEEEEEEHHHHTTCGGGCCEEEESCH
T ss_pred             cccccceeeeeecCCccccCCCcccccccccc
Confidence            111111125566888988755 5567765533

>d2gb3a1 c.67.1.1 (A:4-392) AAT homologue TM1698 {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: AAT-like
domain: AAT homologue TM1698
species: Thermotoga maritima [TaxId: 2336]

Probab=99.50  E-value=4.9e-13  Score=132.32  Aligned_cols=153  Identities=17%  Similarity=0.124  Sum_probs=107.0

Q ss_pred             cEEEeCcHHHHHHHHHHHHHHhcCCcccccCCCCCCCeEEEecCCCchHHHHHHHHhCCCCCcEEEEecCCCC-CcCHHH
Q psy14299          4 KPFLLPGGSISNMYSICLARYRLDPDTKRKGLSHLPPLCMFTSEDSHYSMLKAAHWLGIGMDNVIRVKTNERG-QMICSF   82 (448)
Q Consensus         4 ~g~~t~ggT~an~~al~~a~~~~~~~~~~~G~~~~~~~~Vl~~~~~H~s~~~~~~~~g~~~~~v~~v~~~~~g-~id~e~   82 (448)
                      ..++|+|+++++..++.+...              +++.|++....++.....++..|.   .+..++.++++ ..+.+.
T Consensus        89 ~I~it~G~~~~l~~~~~~l~~--------------~gd~V~i~~P~y~~~~~~~~~~g~---~~~~~~~~~~~~~~~~~~  151 (389)
T d2gb3a1          89 NVLVTNGGSEAILFSFAVIAN--------------PGDEILVLEPFYANYNAFAKIAGV---KLIPVTRRMEEGFAIPQN  151 (389)
T ss_dssp             GEEEESHHHHHHHHHHHHHCC--------------TTCEEEEEESCCTHHHHHHHHHTC---EEEEEECCGGGTSCCCTT
T ss_pred             eEEeccccccccccccccccc--------------CCCeEEEeCCCCccccccccccCc---cccccccccccccchhhh
Confidence            468899999987777666544              566788888899999999999998   67888876644 344444


Q ss_pred             HHHHHHHhhhcCCCcEEEEEeccCCccccccC---HHHHHHHHHHcCCEEEEecccccccccccchhhhhcCCCCccEEE
Q psy14299         83 LEQTIQTSLAEKKIPLFVNATAGTTVLGAFDP---LDEIATVCEKYDLWMHVDACWGGSLIFSEKYSFVLKGINRANSVS  159 (448)
Q Consensus        83 Le~~l~~~~~~~~~~~lVv~~~~~t~tG~~~~---l~~I~~ia~~~g~~l~VD~A~~~~~~~~~~~~~~~~~~~~aD~~~  159 (448)
                      +...+      ..++++++++.++|+||...+   +++|.++|++||++++.|.+++........... ......-..++
T Consensus       152 ~~~~~------~~~~~~~~l~nP~NPtG~~~s~~~~~~i~~~a~~~~~~iI~De~y~~~~~~~~~~~~-~~~~~~~~~v~  224 (389)
T d2gb3a1         152 LESFI------NERTKGIVLSNPCNPTGVVYGKDEMRYLVEIAERHGLFLIVDEVYSEIVFRGEFASA-LSIESDKVVVI  224 (389)
T ss_dssp             GGGGC------CTTEEEEEEESSCTTTCCCCCHHHHHHHHHHHHHTTCEEEEECTTTTCBCSSCCCCG-GGSCCTTEEEE
T ss_pred             hhhhc------ccCccEEEeCCCCccccccchHHHHHHHHhhcccCCEEEEEeccccccccccccccc-ccccccccccc
Confidence            43333      236889999999999997755   888999999999999999998765442211111 11111233556


Q ss_pred             ECCccccCCC-CceEEEEEecc
Q psy14299        160 WNPHKMLGAP-LQCSILLIKEK  180 (448)
Q Consensus       160 ~s~hK~l~~P-~g~G~l~vr~~  180 (448)
                      .+..|.++.| .-+|+++..++
T Consensus       225 ~s~sK~~~~~GlRiG~~~~~~~  246 (389)
T d2gb3a1         225 DSVSKKFSACGARVGCLITRNE  246 (389)
T ss_dssp             EESTTTTTCGGGCCEEEECSCH
T ss_pred             ccccccccCcccceeeeeccch
Confidence            6777877766 34676665444

>d1w7la_ c.67.1.1 (A:) Kynurenine--oxoglutarate transaminase I {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: AAT-like
domain: Kynurenine--oxoglutarate transaminase I
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.47  E-value=8e-13  Score=132.36  Aligned_cols=153  Identities=12%  Similarity=0.007  Sum_probs=108.8

Q ss_pred             cEEEeCcHHHHHHHHHHHHHHhcCCcccccCCCCCCCeEEEecCCCchHHHHHHHHhCCCCCcEEEEecCC---------
Q psy14299          4 KPFLLPGGSISNMYSICLARYRLDPDTKRKGLSHLPPLCMFTSEDSHYSMLKAAHWLGIGMDNVIRVKTNE---------   74 (448)
Q Consensus         4 ~g~~t~ggT~an~~al~~a~~~~~~~~~~~G~~~~~~~~Vl~~~~~H~s~~~~~~~~g~~~~~v~~v~~~~---------   74 (448)
                      ..++|+|+++++.+++.+...              +++.|+++......+...+...|.   +++.++..+         
T Consensus        90 ~I~it~G~~~al~~~~~~l~~--------------~g~~vlv~~p~~~~y~~~~~~~g~---~~v~~~~~~~~~~~~~~~  152 (418)
T d1w7la_          90 NVLVTVGGYGALFTAFQALVD--------------EGDEVIIIEPFFDCYEPMTMMAGG---RPVFVSLKPGPIQNGELG  152 (418)
T ss_dssp             HEEEESHHHHHHHHHHHHHCC--------------TTCEEEEEESCCTTHHHHHHHTTC---EEEEEECEECC---CCSE
T ss_pred             ceeeccCcHHHHHHHHHhhcc--------------CCceeeccccccchhHHHHHHcCC---Eeeccccccccccccccc
Confidence            478999999998888776654              567788888889999999999998   566666432         


Q ss_pred             ---CCCcCHHHHHHHHHHhhhcCCCcEEEEEeccCCcccccc---CHHHHHHHHHHcCCEEEEecccccccccccchh--
Q psy14299         75 ---RGQMICSFLEQTIQTSLAEKKIPLFVNATAGTTVLGAFD---PLDEIATVCEKYDLWMHVDACWGGSLIFSEKYS--  146 (448)
Q Consensus        75 ---~g~id~e~Le~~l~~~~~~~~~~~lVv~~~~~t~tG~~~---~l~~I~~ia~~~g~~l~VD~A~~~~~~~~~~~~--  146 (448)
                         ++.+|.+++.....      ..+++++++.++|+||...   .+++|.++|++|+++++.|.+|....+..+...  
T Consensus       153 ~~~~~~~d~~~~~~~~~------~~~~~i~~~~p~NPtG~~~s~~~~~~i~~~a~~~~v~vI~De~Y~~l~~~~~~~~~~  226 (418)
T d1w7la_         153 SSSNWQLDPMELAGKFT------SRTKALVLNTPNNPLGKVFSREELELVASLCQQHDVVCITDEVYQWMVYDGHQHISI  226 (418)
T ss_dssp             EGGGEECCHHHHHHHCC------TTEEEEEEESSCTTTCCCCCHHHHHHHHHHHHHHTCEEEEECTTTTCBCTTCCCCCG
T ss_pred             cccCcccchhhhhcccc------ccccceeccCcCCcccccccHHHHHHHHHHHHhcCCCchhhhhhHHhhcCCCCCCCH
Confidence               34566666665443      3578999999999999775   477888999999999999999876543211111  


Q ss_pred             hhhcCCCCccEEEECCccccCCC-CceEEEEEec
Q psy14299        147 FVLKGINRANSVSWNPHKMLGAP-LQCSILLIKE  179 (448)
Q Consensus       147 ~~~~~~~~aD~~~~s~hK~l~~P-~g~G~l~vr~  179 (448)
                      ..+.+...--++..|+.|.++.| .-+|+++..+
T Consensus       227 ~~~~~~~~~~i~~~S~SK~~~~pG~RvG~~v~~~  260 (418)
T d1w7la_         227 ASLPGMWERTLTIGSAGKTFSATGWKVGWVLGPD  260 (418)
T ss_dssp             GGSTTTGGGEEEEEEHHHHTTCGGGCCEEEECCH
T ss_pred             HHccccccccceecccCccccCCCCcccccccch
Confidence            01111111236678899987766 6677776643

>d2f8ja1 c.67.1.1 (A:1-334) Histidinol-phosphate aminotransferase HisC {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: AAT-like
domain: Histidinol-phosphate aminotransferase HisC
species: Thermotoga maritima [TaxId: 2336]

Probab=99.44  E-value=6.1e-12  Score=121.98  Aligned_cols=143  Identities=10%  Similarity=-0.080  Sum_probs=98.5

Q ss_pred             EEEeCcHHHHHHHHHHHHHHhcCCcccccCCCCCCCeEEEecCCCchHHHHHHHHhCCCCCcEEEEecCCCCCcCHHHHH
Q psy14299          5 PFLLPGGSISNMYSICLARYRLDPDTKRKGLSHLPPLCMFTSEDSHYSMLKAAHWLGIGMDNVIRVKTNERGQMICSFLE   84 (448)
Q Consensus         5 g~~t~ggT~an~~al~~a~~~~~~~~~~~G~~~~~~~~Vl~~~~~H~s~~~~~~~~g~~~~~v~~v~~~~~g~id~e~Le   84 (448)
                      .++|+|+++++.+.+.    .              .+.|++....+..+...++..|.   +++.+|.++++..+-.   
T Consensus        79 I~it~G~~~~l~~l~~----~--------------~d~v~i~~P~y~~~~~~~~~~g~---~~v~v~~~~~~~~~~~---  134 (334)
T d2f8ja1          79 VSVGNGADEIIYVMML----M--------------FDRSVFFPPTYSCYRIFAKAVGA---KFLEVPLTKDLRIPEV---  134 (334)
T ss_dssp             EEEEEHHHHHHHHHHH----H--------------SSEEEECSSCCHHHHHHHHHHTC---CEEECCCCTTSCCCCC---
T ss_pred             EEecCcchhHHHHHhh----h--------------ccccccccccccccccchhccCC---cccccccccccccccc---
Confidence            6788888887655432    1              23477788889999999999999   7999999877655310   


Q ss_pred             HHHHHhhhcCCCcEEEEEeccCCccccccCHHHHHHHHHHcCCEEEEecccccccccccchhhhhcCCCCccEEEECCcc
Q psy14299         85 QTIQTSLAEKKIPLFVNATAGTTVLGAFDPLDEIATVCEKYDLWMHVDACWGGSLIFSEKYSFVLKGINRANSVSWNPHK  164 (448)
Q Consensus        85 ~~l~~~~~~~~~~~lVv~~~~~t~tG~~~~l~~I~~ia~~~g~~l~VD~A~~~~~~~~~~~~~~~~~~~~aD~~~~s~hK  164 (448)
                              ...++++++++.++|++|.+.+.++|.+++ ++++++++|.++............  .. ..--+++.|+.|
T Consensus       135 --------~~~~~~~l~l~nP~NPtG~~~s~~~l~~~~-~~~~~ii~Dd~~~~~~~~~~~~~~--~~-~~~~i~~~S~SK  202 (334)
T d2f8ja1         135 --------NVGEGDVVFIPNPNNPTGHVFEREEIERIL-KTGAFVALDEAYYEFHGESYVDFL--KK-YENLAVIRTFSK  202 (334)
T ss_dssp             --------CCCTTEEEEEESSCTTTCCCCCHHHHHHHH-TTTCEEEEECTTGGGTCCCCGGGG--GT-CSSEEEEEESTT
T ss_pred             --------ccccceEEEecccccccceeecHHHhhccc-cceeEEeecccchhhccccccccc--cc-CceEEEEecCcc
Confidence                    123578999999999999999999888765 589999999987543221111111  11 112366778999


Q ss_pred             ccCCCC-ceEEEEEeccchhh
Q psy14299        165 MLGAPL-QCSILLIKEKGLLH  184 (448)
Q Consensus       165 ~l~~P~-g~G~l~vr~~~~~~  184 (448)
                      .++.|. -+|+++. ++.+..
T Consensus       203 ~~~~~G~R~G~~~~-~~~~i~  222 (334)
T d2f8ja1         203 AFSLAAQRVGYVVA-SEKFID  222 (334)
T ss_dssp             TSSCTTTCEEEEEE-CHHHHH
T ss_pred             ccchhhhhhhhccc-chHHHH
Confidence            888774 6777766 444433

>d1y4ia1 c.67.1.3 (A:2-398) Methionine gamma-lyase, MGL {Citrobacter freundii [TaxId: 546]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: Cystathionine synthase-like
domain: Methionine gamma-lyase, MGL
species: Citrobacter freundii [TaxId: 546]

Probab=99.44  E-value=1.8e-11  Score=120.67  Aligned_cols=141  Identities=11%  Similarity=0.006  Sum_probs=109.7

Q ss_pred             cEEEeCcHHHHHHHHHHHHHHhcCCcccccCCCCCCCeEEEecCCCchHHHHHHH----HhCCCCCcEEEEecCCCCCcC
Q psy14299          4 KPFLLPGGSISNMYSICLARYRLDPDTKRKGLSHLPPLCMFTSEDSHYSMLKAAH----WLGIGMDNVIRVKTNERGQMI   79 (448)
Q Consensus         4 ~g~~t~ggT~an~~al~~a~~~~~~~~~~~G~~~~~~~~Vl~~~~~H~s~~~~~~----~~g~~~~~v~~v~~~~~g~id   79 (448)
                      .++++++|..|+..++....+              +++.|+++...+......+.    ..|+   .+..+...     |
T Consensus        80 ~a~~~sSGmaAi~~~l~~ll~--------------~Gd~vi~~~~~Yg~t~~~~~~~l~~~Gi---~~~~vd~~-----d  137 (397)
T d1y4ia1          80 AGLATASGISAITTTLLTLCQ--------------QGDHIVSASAIYGCTHAFLSHSMPKFGI---NVRFVDAG-----K  137 (397)
T ss_dssp             EEEEESSHHHHHHHHHHHHCC--------------TTCEEEEESSSCHHHHHHHHTHHHHTTC---EEEEECTT-----S
T ss_pred             cceeehHHHHHHHHHHhhccC--------------CCCeeeeecccccccchhhhcccCCCce---EeeccCCC-----C
Confidence            468889999998777766544              67788889888877665553    4466   68777765     8


Q ss_pred             HHHHHHHHHHhhhcCCCcEEEEEeccCCccccccCHHHHHHHHHHcCCEEEEecccccccccccchhhhhcCCCCccEEE
Q psy14299         80 CSFLEQTIQTSLAEKKIPLFVNATAGTTVLGAFDPLDEIATVCEKYDLWMHVDACWGGSLIFSEKYSFVLKGINRANSVS  159 (448)
Q Consensus        80 ~e~Le~~l~~~~~~~~~~~lVv~~~~~t~tG~~~~l~~I~~ia~~~g~~l~VD~A~~~~~~~~~~~~~~~~~~~~aD~~~  159 (448)
                      ++.+++++++      ++++|.+..++|++..+.||++|+++||++|++++||.+++.....-|- .   .   ++|+++
T Consensus       138 ~~~~~~~i~~------~Tklv~~Esp~NP~l~v~Di~~i~~iA~~~gi~~vvDnT~atP~~~~Pl-~---~---GaDivi  204 (397)
T d1y4ia1         138 PEEIRAAMRP------ETKVVYIETPANPTLSLVDIETVAGIAHQQGALLVVDNTFMSPYCQQPL-Q---L---GADIVV  204 (397)
T ss_dssp             HHHHHHHCCT------TEEEEEEESSCTTTCCCCCHHHHHHHHHHTTCEEEEECTTTCTTTCCGG-G---G---TCSEEE
T ss_pred             HHHHHHhcCC------CCcEEEecCCcccceeecccHHHHHHhhcCCceEEecCcccCcccCcch-h---c---CCCEEE
Confidence            8999999864      5899999999999999999999999999999999999998765553221 1   1   489999


Q ss_pred             ECCccccCCCC--ceEEEEEec
Q psy14299        160 WNPHKMLGAPL--QCSILLIKE  179 (448)
Q Consensus       160 ~s~hK~l~~P~--g~G~l~vr~  179 (448)
                      .|..|++++..  -.|++..++
T Consensus       205 hS~TKyi~Ghsdvl~G~v~~~~  226 (397)
T d1y4ia1         205 HSVTKYINGHGDVIGGIIVGKQ  226 (397)
T ss_dssp             EETTTTTTCSSCCCCEEEEECH
T ss_pred             EehhhhcCCCcceeeeccCCCH
Confidence            99999987753  234454444

>d1gc0a_ c.67.1.3 (A:) Methionine gamma-lyase, MGL {Pseudomonas putida [TaxId: 303]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: Cystathionine synthase-like
domain: Methionine gamma-lyase, MGL
species: Pseudomonas putida [TaxId: 303]

Probab=99.40  E-value=2.3e-11  Score=119.83  Aligned_cols=141  Identities=12%  Similarity=0.051  Sum_probs=108.1

Q ss_pred             cEEEeCcHHHHHHHHHHHHHHhcCCcccccCCCCCCCeEEEecCCCchHHHHHHHHh----CCCCCcEEEEecCCCCCcC
Q psy14299          4 KPFLLPGGSISNMYSICLARYRLDPDTKRKGLSHLPPLCMFTSEDSHYSMLKAAHWL----GIGMDNVIRVKTNERGQMI   79 (448)
Q Consensus         4 ~g~~t~ggT~an~~al~~a~~~~~~~~~~~G~~~~~~~~Vl~~~~~H~s~~~~~~~~----g~~~~~v~~v~~~~~g~id   79 (448)
                      .++.+++|..|+..++....+              +++.|++++..+......++..    |+   .+..++..     |
T Consensus        76 ~a~~~~SGmaAi~~~l~~l~~--------------~Gd~vl~~~~~Yg~t~~l~~~~~~~~Gi---~~~~~d~~-----d  133 (392)
T d1gc0a_          76 AGLALASGMGAITSTLWTLLR--------------PGDEVLLGNTLYGCTFAFLHHGIGEFGV---KLRHVDMA-----D  133 (392)
T ss_dssp             EEEEESSHHHHHHHHHHHHCC--------------TTCEEEEESSCCSHHHHHHHHTGGGGTC---EEEEECTT-----C
T ss_pred             ceeehhhHHHHHHHHHHhhcc--------------CCCeeecccccchhhhhhhhhhhccCCc---ccccCCcc-----C
Confidence            467888898888777766544              5677888888777766665433    45   67777654     8


Q ss_pred             HHHHHHHHHHhhhcCCCcEEEEEeccCCccccccCHHHHHHHHHHcCCEEEEecccccccccccchhhhhcCCCCccEEE
Q psy14299         80 CSFLEQTIQTSLAEKKIPLFVNATAGTTVLGAFDPLDEIATVCEKYDLWMHVDACWGGSLIFSEKYSFVLKGINRANSVS  159 (448)
Q Consensus        80 ~e~Le~~l~~~~~~~~~~~lVv~~~~~t~tG~~~~l~~I~~ia~~~g~~l~VD~A~~~~~~~~~~~~~~~~~~~~aD~~~  159 (448)
                      ++++++++++      ++++|.+..++|++..+.||++|+++||++|+.++||.+++.....-| ..   .   ++|+++
T Consensus       134 ~~~~~~ai~~------~t~lv~~Esp~NP~l~v~Di~~i~~ia~~~g~~~vvDnT~atP~~~~P-l~---~---GaDivi  200 (392)
T d1gc0a_         134 LQALEAAMTP------ATRVIYFESPANPNMHMADIAGVAKIARKHGATVVVDNTYCTPYLQRP-LE---L---GADLVV  200 (392)
T ss_dssp             HHHHHHHCCT------TEEEEEEESSCTTTCCCCCHHHHHHHHGGGTCEEEEECTTTHHHHCCG-GG---G---TCSEEE
T ss_pred             HHHHHHhCCC------CCeEEEecccccceeeecchHHHHHHHHhcCCEEEEecCccCccccCh-HH---h---CCCEEE
Confidence            9999999865      589999999999999999999999999999999999999876655222 11   1   589999


Q ss_pred             ECCccccCCCC--ceEEEEEec
Q psy14299        160 WNPHKMLGAPL--QCSILLIKE  179 (448)
Q Consensus       160 ~s~hK~l~~P~--g~G~l~vr~  179 (448)
                      .|..|++++..  -.|.+..++
T Consensus       201 hS~TKyi~Ghsd~~~G~v~~~~  222 (392)
T d1gc0a_         201 HSATKYLSGHGDITAGIVVGSQ  222 (392)
T ss_dssp             EETTTTTTCSSSCCCEEEEECH
T ss_pred             EecceeecCCcccccccccchh
Confidence            99999998743  234454544

>d1o69a_ c.67.1.4 (A:) Aminotransferase homolog WlaK (PglE, Cj1121c) {Campylobacter jejuni [TaxId: 197]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: GABA-aminotransferase-like
domain: Aminotransferase homolog WlaK (PglE, Cj1121c)
species: Campylobacter jejuni [TaxId: 197]

Probab=99.38  E-value=1.8e-11  Score=120.35  Aligned_cols=155  Identities=16%  Similarity=0.177  Sum_probs=112.5

Q ss_pred             cEEEeCcHHHHHHHHHHHHHHhcCCcccccCCCCCCCeEEEecCCCchHHHHHHHHhCCCCCcEEEEecCCCCCcCHHHH
Q psy14299          4 KPFLLPGGSISNMYSICLARYRLDPDTKRKGLSHLPPLCMFTSEDSHYSMLKAAHWLGIGMDNVIRVKTNERGQMICSFL   83 (448)
Q Consensus         4 ~g~~t~ggT~an~~al~~a~~~~~~~~~~~G~~~~~~~~Vl~~~~~H~s~~~~~~~~g~~~~~v~~v~~~~~g~id~e~L   83 (448)
                      .+++|++||.|+.+|+.++.-             .+++.|++|..++.+...++...|.   .++.+.++++...+....
T Consensus        38 ~~~~~~SgT~Al~lal~~l~~-------------~~gdeVi~p~~t~~a~~~~~~~~g~---~pv~~Di~~~~~~~~~~~  101 (374)
T d1o69a_          38 NALALNSATAALHLALRVAGV-------------KQDDIVLASSFTFIASVAPICYLKA---KPVFIDCDETYNIDVDLL  101 (374)
T ss_dssp             EEEEESCHHHHHHHHHHHTTC-------------CTTCEEEEESSSCGGGTHHHHHTTC---EEEEECBCTTSSBCHHHH
T ss_pred             eEEEeCCHHHHHHHHHHHcCC-------------CCcCEEEeCCcchHhhHHHHhhccc---eeEecccccccccccccc
Confidence            478999999999999876422             2678899999999999999999999   788888887654444443


Q ss_pred             HHHHHHhhhcCCCcEEEEEeccCCccccccCHHHHHHHHHHcCCEEEEecccccccccccchhhhhcCCCCccEEEECCc
Q psy14299         84 EQTIQTSLAEKKIPLFVNATAGTTVLGAFDPLDEIATVCEKYDLWMHVDACWGGSLIFSEKYSFVLKGINRANSVSWNPH  163 (448)
Q Consensus        84 e~~l~~~~~~~~~~~lVv~~~~~t~tG~~~~l~~I~~ia~~~g~~l~VD~A~~~~~~~~~~~~~~~~~~~~aD~~~~s~h  163 (448)
                      +.....   ...++++|++++.   .|...|+++|.++|+++|++++-|+||+.|...-...   +..  ..|+-++|+|
T Consensus       102 ~~~~~~---~~~~~~aii~~~~---~G~~~d~~~i~~~~~~~~i~vIED~a~a~g~~~~~~~---~G~--~gd~~~fSf~  170 (374)
T d1o69a_         102 KLAIKE---CEKKPKALILTHL---YGNAAKMDEIVEICKENDIVLIEDAAEALGSFYKNKA---LGT--FGEFGVYSYN  170 (374)
T ss_dssp             HHHHHH---CSSCCCEEEEECG---GGCCCCHHHHHHHHHHTTCEEEEECTTCTTCEETTEE---TTS--SSSEEEEECC
T ss_pred             cccchh---ccccccccccccc---ccchhhhHHHHHHhhccCcchhhhhhhhhcceECCee---cCC--CCceEEEecc
Confidence            333322   1235777777654   6889999999999999999999999999987643221   111  2366555555


Q ss_pred             --cccCCCCceEEEEEeccchhhhh
Q psy14299        164 --KMLGAPLQCSILLIKEKGLLHQA  186 (448)
Q Consensus       164 --K~l~~P~g~G~l~vr~~~~~~~~  186 (448)
                        |.+.+. +.|+++..+++.....
T Consensus       171 ~~K~l~tg-eGG~i~tnn~~~~~~~  194 (374)
T d1o69a_         171 GNKIITTS-GGGMLIGKNKEKIEKA  194 (374)
T ss_dssp             TTSSSCCS-SCEEEEESCHHHHHHH
T ss_pred             Cccccccc-cceeehhhhHHHHHhh
Confidence              888764 4477777776654443

>d1cs1a_ c.67.1.3 (A:) Cystathionine gamma-synthase, CGS {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: Cystathionine synthase-like
domain: Cystathionine gamma-synthase, CGS
species: Escherichia coli [TaxId: 562]

Probab=99.37  E-value=1.1e-10  Score=114.81  Aligned_cols=146  Identities=13%  Similarity=0.060  Sum_probs=107.7

Q ss_pred             cEEEeCcHHHHHHHHHHHHHHhcCCcccccCCCCCCCeEEEecCCCchHHHHHHH-HhCCCCCcEEEEecCCCCCcCHHH
Q psy14299          4 KPFLLPGGSISNMYSICLARYRLDPDTKRKGLSHLPPLCMFTSEDSHYSMLKAAH-WLGIGMDNVIRVKTNERGQMICSF   82 (448)
Q Consensus         4 ~g~~t~ggT~an~~al~~a~~~~~~~~~~~G~~~~~~~~Vl~~~~~H~s~~~~~~-~~g~~~~~v~~v~~~~~g~id~e~   82 (448)
                      .++.+++|..|+..++.+..+              +++.|++++..+........ .+......+..+...     |++.
T Consensus        67 ~a~~~sSGMaAi~~~l~~l~~--------------~gd~vv~~~~~yg~t~~~~~~~~~~~g~~~~~~d~~-----d~~~  127 (384)
T d1cs1a_          67 GAVLTNTGMSAIHLVTTVFLK--------------PGDLLVAPHDCYGGSYRLFDSLAKRGCYRVLFVDQG-----DEQA  127 (384)
T ss_dssp             EEEEESSHHHHHHHHHHHHCC--------------TTCEEEEETTCCHHHHHHHHHHHTTTSCEEEEECTT-----CHHH
T ss_pred             ceEEecChHHHHHHHHhhccc--------------ccceecccccccchhhhhhhhhhcccccccccccCC-----CHHH
Confidence            467888888887777765543              67788888888876655554 322222245555543     8899


Q ss_pred             HHHHHHHhhhcCCCcEEEEEeccCCccccccCHHHHHHHHHHcCCEEEEecccccccccccchhhhhcCCCCccEEEECC
Q psy14299         83 LEQTIQTSLAEKKIPLFVNATAGTTVLGAFDPLDEIATVCEKYDLWMHVDACWGGSLIFSEKYSFVLKGINRANSVSWNP  162 (448)
Q Consensus        83 Le~~l~~~~~~~~~~~lVv~~~~~t~tG~~~~l~~I~~ia~~~g~~l~VD~A~~~~~~~~~~~~~~~~~~~~aD~~~~s~  162 (448)
                      ++.++.+      ++++|.+..++|++..+.||++|+++||++|++++||.+++.....-+ ..   .   ++|+++.|.
T Consensus       128 ~~~~~~~------~t~~v~~EspsNP~l~v~Di~~i~~ia~~~g~~~vVDNT~atP~~~~P-l~---~---GaDiVvhS~  194 (384)
T d1cs1a_         128 LRAALAE------KPKLVLVESPSNPLLRVVDIAKICHLAREVGAVSVVDNTFLSPALQNP-LA---L---GADLVLHSC  194 (384)
T ss_dssp             HHHHHHT------CCSEEEEECSCTTTCCCCCHHHHHHHHHHTTCEEEEECTTTCTTTCCG-GG---G---TCSEEEEET
T ss_pred             HHhhccc------cccEEEEeccccccceeccHHHHhhhhhhcCcEEEEeccccCcccccc-cc---c---CCCEEEEcc
Confidence            9988876      588999999999999999999999999999999999999876554222 11   1   589999999


Q ss_pred             ccccCCCC--ceEEEEEeccc
Q psy14299        163 HKMLGAPL--QCSILLIKEKG  181 (448)
Q Consensus       163 hK~l~~P~--g~G~l~vr~~~  181 (448)
                      .|++++..  -.|+++.+++.
T Consensus       195 TKyi~Ghsdv~~G~vv~~~~~  215 (384)
T d1cs1a_         195 TKYLNGHSDVVAGVVIAKDPD  215 (384)
T ss_dssp             TTTTTCSSCCCCEEEEESSHH
T ss_pred             ccccccCCCcccccccCCchh
Confidence            99998765  34445554443

>d1sffa_ c.67.1.4 (A:) 4-aminobutyrate aminotransferase, GABA-aminotransferase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: GABA-aminotransferase-like
domain: 4-aminobutyrate aminotransferase, GABA-aminotransferase
species: Escherichia coli [TaxId: 562]

Probab=99.31  E-value=3.6e-10  Score=113.09  Aligned_cols=162  Identities=12%  Similarity=0.082  Sum_probs=93.7

Q ss_pred             cEEEeCcHHHHHHHHHHHHHHhcCCcccccCCCCCCCeEEEecCCCchHHHHHHHHhCCC----------CCcEEEEecC
Q psy14299          4 KPFLLPGGSISNMYSICLARYRLDPDTKRKGLSHLPPLCMFTSEDSHYSMLKAAHWLGIG----------MDNVIRVKTN   73 (448)
Q Consensus         4 ~g~~t~ggT~an~~al~~a~~~~~~~~~~~G~~~~~~~~Vl~~~~~H~s~~~~~~~~g~~----------~~~v~~v~~~   73 (448)
                      .++|+++||+|+..|+..+|..-.           ...+|-.....|-...-+....|..          .......+.+
T Consensus       103 ~v~f~~sGseA~e~Alk~ar~~t~-----------r~~ii~~~~~yHG~t~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~  171 (425)
T d1sffa_         103 KTLLVTTGSEAVENAVKIARAATK-----------RSGTIAFSGAYHGRTHYTLALTGKVNPYSAGMGLMPGHVYRALYP  171 (425)
T ss_dssp             EEEEESSHHHHHHHHHHHHHHHHT-----------CCEEEEETTCCCCSSHHHHHHSSCCTTTTTTSCCCCSSEEEECCC
T ss_pred             eeeeeccccchhhhHHHHhhhhhc-----------ccceEeecCCCcCccccchhhcCCCCcccCCcccccCCccccCCc
Confidence            478999999999999999988631           3334555556666555555555421          1112222221


Q ss_pred             C--CCCc--C-HHHHHHHHHHhhhcCCCcEEEEEeccCCccccccC----HHHHHHHHHHcCCEEEEecccccccccccc
Q psy14299         74 E--RGQM--I-CSFLEQTIQTSLAEKKIPLFVNATAGTTVLGAFDP----LDEIATVCEKYDLWMHVDACWGGSLIFSEK  144 (448)
Q Consensus        74 ~--~g~i--d-~e~Le~~l~~~~~~~~~~~lVv~~~~~t~tG~~~~----l~~I~~ia~~~g~~l~VD~A~~~~~~~~~~  144 (448)
                      .  ....  . .+..++.+.. ......+.+|++.-.....|.+.|    +++|.++|++||+.+++|+.+.+..-....
T Consensus       172 ~~~~~~~~~~~~~~~~~~~~~-~~~~~~vaavi~EPi~g~~G~~~~~~~~l~~l~~lc~~~gillI~DEV~tG~gR~g~~  250 (425)
T d1sffa_         172 CPLHGISEDDAIASIHRIFKN-DAAPEDIAAIVIEPVQGEGGFYASSPAFMQRLRALCDEHGIMLIADEVQSGAGRTGTL  250 (425)
T ss_dssp             BGGGTBCHHHHHHHHHHHHHH-TCCGGGEEEEEECSBCTTTTSCBCCHHHHHHHHHHHHHHTCEEEEECTTTTTTTTSSS
T ss_pred             cccccccchhhHHHHHHHHHh-cccccceEEEEecCccCCCCcccCCHHHHHHHHHHHHHcCceEEeccccccCCCcchh
Confidence            1  1111  1 1112222221 112224556666655555676543    899999999999999999988863221111


Q ss_pred             hhhhhcCCCCccEEEECCccccCCCCceEEEEEecc
Q psy14299        145 YSFVLKGINRANSVSWNPHKMLGAPLQCSILLIKEK  180 (448)
Q Consensus       145 ~~~~~~~~~~aD~~~~s~hK~l~~P~g~G~l~vr~~  180 (448)
                      +.....++ ..|++++  .|.+++-...|+++.+++
T Consensus       251 ~a~~~~gv-~PDi~~~--gK~l~gG~P~~av~~~~~  283 (425)
T d1sffa_         251 FAMEQMGV-APDLTTF--AKSIAGGFPLAGVTGRAE  283 (425)
T ss_dssp             SGGGGTTS-CCSEEEE--CGGGGTSSCCEEEEEEHH
T ss_pred             hHHHhcCC-Cccceec--ccccCCCcceEEEEEcHH
Confidence            11112234 3688885  677765566888888775

>d1qgna_ c.67.1.3 (A:) Cystathionine gamma-synthase, CGS {Common tobacco (Nicotiana tabacum) [TaxId: 4097]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: Cystathionine synthase-like
domain: Cystathionine gamma-synthase, CGS
species: Common tobacco (Nicotiana tabacum) [TaxId: 4097]

Probab=99.31  E-value=5.2e-10  Score=110.23  Aligned_cols=134  Identities=13%  Similarity=0.117  Sum_probs=99.7

Q ss_pred             cEEEeCcHHHHHHHHHHHHHHhcCCcccccCCCCCCCeEEEecCCCchHHHHHHHH----hCCCCCcEEEEecCCCCCcC
Q psy14299          4 KPFLLPGGSISNMYSICLARYRLDPDTKRKGLSHLPPLCMFTSEDSHYSMLKAAHW----LGIGMDNVIRVKTNERGQMI   79 (448)
Q Consensus         4 ~g~~t~ggT~an~~al~~a~~~~~~~~~~~G~~~~~~~~Vl~~~~~H~s~~~~~~~----~g~~~~~v~~v~~~~~g~id   79 (448)
                      .++.+++|..|+..++.+...              +++.|+++...+......+..    .|+   .+..+...     +
T Consensus        84 ~a~~~sSGMaAi~~~l~~l~~--------------~Gd~iv~~~~~Yg~t~~l~~~~~~~~gi---~~~~~~~~-----~  141 (398)
T d1qgna_          84 STLLMASGMCASTVMLLALVP--------------AGGHIVTTTDCYRKTRIFIETILPKMGI---TATVIDPA-----D  141 (398)
T ss_dssp             EEEEESCHHHHHHHHHHHHSC--------------SSCEEEEETTSCHHHHHHHHHTGGGGTC---EEEEECSS-----C
T ss_pred             eEEEecCcchHHHHHHhhccc--------------ccccccccccccchhhhhhccccccccc---cccccccc-----c
Confidence            468899999888877765443              677788888888776655543    244   45555432     5


Q ss_pred             HHHHHHHHHHhhhcCCCcEEEEEeccCCccccccCHHHHHHHHHHcCCEEEEecccccccccccchhhhhcCCCCccEEE
Q psy14299         80 CSFLEQTIQTSLAEKKIPLFVNATAGTTVLGAFDPLDEIATVCEKYDLWMHVDACWGGSLIFSEKYSFVLKGINRANSVS  159 (448)
Q Consensus        80 ~e~Le~~l~~~~~~~~~~~lVv~~~~~t~tG~~~~l~~I~~ia~~~g~~l~VD~A~~~~~~~~~~~~~~~~~~~~aD~~~  159 (448)
                      .+..++.+.+     +++++|.+..++|++..+.||++|+++||++|++++||.+++.....-+ ..      -++|+++
T Consensus       142 ~~~~~~~~~~-----~~t~~v~~EspsNP~l~v~Di~~ia~ia~~~g~~~vVDnT~atP~~~~P-l~------~GaDiVi  209 (398)
T d1qgna_         142 VGALELALNQ-----KKVNLFFTESPTNPFLRCVDIELVSKLCHEKGALVCIDGTFATPLNQKA-LA------LGADLVL  209 (398)
T ss_dssp             HHHHHHHHHH-----SCEEEEEEESSCTTTCCCCCHHHHHHHHHHTTCEEEEECTTTCTTTCCT-TT------TTCSEEE
T ss_pred             hhhhhhhhcc-----ccceEEEccCccccccccchHHHHHHHHhhcCCEEEecceeeccccCCc-hh------hCCCEEE
Confidence            5555554433     3688999999999999999999999999999999999999876554221 11      1489999


Q ss_pred             ECCccccCCCCc
Q psy14299        160 WNPHKMLGAPLQ  171 (448)
Q Consensus       160 ~s~hK~l~~P~g  171 (448)
                      .|..|++++...
T Consensus       210 hS~TKy~~Ghsd  221 (398)
T d1qgna_         210 HSATKFLGGHND  221 (398)
T ss_dssp             ECTTTTTTCSSS
T ss_pred             EechhhcCcccc
Confidence            999999998754

>d1ibja_ c.67.1.3 (A:) Cystathionine beta-lyase, CBL {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: Cystathionine synthase-like
domain: Cystathionine beta-lyase, CBL
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=99.29  E-value=1.2e-10  Score=114.39  Aligned_cols=141  Identities=13%  Similarity=0.100  Sum_probs=105.8

Q ss_pred             cEEEeCcHHHHHHHHHHHHHHhcCCcccccCCCCCCCeEEEecCCCchHHHHHHHHh----CCCCCcEEEEecCCCCCcC
Q psy14299          4 KPFLLPGGSISNMYSICLARYRLDPDTKRKGLSHLPPLCMFTSEDSHYSMLKAAHWL----GIGMDNVIRVKTNERGQMI   79 (448)
Q Consensus         4 ~g~~t~ggT~an~~al~~a~~~~~~~~~~~G~~~~~~~~Vl~~~~~H~s~~~~~~~~----g~~~~~v~~v~~~~~g~id   79 (448)
                      .++.+++|..|+ .++....              .+++.|+++...+......++..    |+   .+..+...     |
T Consensus        66 ~a~~fsSGMaAi-sall~ll--------------~~Gd~vv~~~~~Yg~t~~l~~~~~~~~gi---~~~~~d~~-----~  122 (380)
T d1ibja_          66 RAFCFTSGMAAL-SAVTHLI--------------KNGEEIVAGDDVYGGSDRLLSQVVPRSGV---VVKRVNTT-----K  122 (380)
T ss_dssp             EEEEESSHHHHH-HHHHTTS--------------CTTCEEEEESSCCHHHHHHHHHTSGGGTC---EEEEECTT-----S
T ss_pred             eEEehhhHHHHH-HHHHHhh--------------CCCCEEEEEecccccccchhhhhhccccc---cccccCcc-----h
Confidence            467788886664 4543322              26778999999998888777643    34   56666544     7


Q ss_pred             HHHHHHHHHHhhhcCCCcEEEEEeccCCccccccCHHHHHHHHHHcCCEEEEecccccccccccchhhhhcCCCCccEEE
Q psy14299         80 CSFLEQTIQTSLAEKKIPLFVNATAGTTVLGAFDPLDEIATVCEKYDLWMHVDACWGGSLIFSEKYSFVLKGINRANSVS  159 (448)
Q Consensus        80 ~e~Le~~l~~~~~~~~~~~lVv~~~~~t~tG~~~~l~~I~~ia~~~g~~l~VD~A~~~~~~~~~~~~~~~~~~~~aD~~~  159 (448)
                      ++.+++++++      ++++|.+..++|++..+.||++|+++||++|++++||.+++.....-+- .      -++|+++
T Consensus       123 ~~~~~~ai~~------~t~li~~EtpsNP~l~v~Di~~i~~iA~~~g~~~vVDnT~atP~~~~Pl-~------~GaDiVv  189 (380)
T d1ibja_         123 LDEVAAAIGP------QTKLVWLESPTNPRQQISDIRKISEMAHAQGALVLVDNSIMSPVLSRPL-E------LGADIVM  189 (380)
T ss_dssp             HHHHHHHCCS------SEEEEEECSSCTTTCCCCCHHHHHHHHHTTTCEEEEECTTTCTTTCCGG-G------TTCSEEE
T ss_pred             HHHHHHHhcc------CccEEEeccccccccccccHHHHHHHHHHcCCeEEeecccccccccccc-c------cCCCEEE
Confidence            8899988854      6899999999999999999999999999999999999998765542221 1      1489999


Q ss_pred             ECCccccCCCCc--eEEEEEecc
Q psy14299        160 WNPHKMLGAPLQ--CSILLIKEK  180 (448)
Q Consensus       160 ~s~hK~l~~P~g--~G~l~vr~~  180 (448)
                      .|..|++++...  .|.+..+++
T Consensus       190 hS~TKyi~GhsDv~~G~v~~~~~  212 (380)
T d1ibja_         190 HSATKFIAGHSDVMAGVLAVKGE  212 (380)
T ss_dssp             EETTTTTTCSSCCCCEEEEECSH
T ss_pred             ecccceeccccCccccccccchh
Confidence            999999988643  444555544

>d2byla1 c.67.1.4 (A:36-439) Ornithine aminotransferase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: GABA-aminotransferase-like
domain: Ornithine aminotransferase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.29  E-value=6.1e-10  Score=110.62  Aligned_cols=161  Identities=17%  Similarity=0.102  Sum_probs=99.5

Q ss_pred             cEEEeCcHHHHHHHHHHHHHHhcCCcccccCCCCCCCeEEEecCCCchHHHHHHHHh-------CC--CCCcEEEEecCC
Q psy14299          4 KPFLLPGGSISNMYSICLARYRLDPDTKRKGLSHLPPLCMFTSEDSHYSMLKAAHWL-------GI--GMDNVIRVKTNE   74 (448)
Q Consensus         4 ~g~~t~ggT~an~~al~~a~~~~~~~~~~~G~~~~~~~~Vl~~~~~H~s~~~~~~~~-------g~--~~~~v~~v~~~~   74 (448)
                      .++|+++||+|+..|+..+|....   +..+........+......|.....+....       +.  ....+..+|.+ 
T Consensus       100 ~v~~~~sGseA~e~Aik~ar~~~~---~~~~~~~~~~~i~~~~~~~hg~t~~~~~~~~~~~~~~~~~p~~~~~~~~p~~-  175 (404)
T d2byla1         100 KVLPMNTGVEAGETACKLARKWGY---TVKGIQKYKAKIVFAAGNFWGRTLSAISSSTDPTSYDGFGPFMPGFDIIPYN-  175 (404)
T ss_dssp             EEEEESSHHHHHHHHHHHHHHHHH---HTTCCCTTCCEEEEETTCCCCCSHHHHTTCCCHHHHTTSCSCCTTEEEECTT-
T ss_pred             ccccccCccccchhHHHHHHHHhh---hccccccccccccccCCCccccccceeccCCCcccccCCCCCCCCeeEeccc-
Confidence            368999999999999999986421   111111123345556666665443332221       11  11235666665 


Q ss_pred             CCCcCHHHHHHHHHHhhhcCCCcEEEEEeccCCccccccC----HHHHHHHHHHcCCEEEEecccccccccccchhhhhc
Q psy14299         75 RGQMICSFLEQTIQTSLAEKKIPLFVNATAGTTVLGAFDP----LDEIATVCEKYDLWMHVDACWGGSLIFSEKYSFVLK  150 (448)
Q Consensus        75 ~g~id~e~Le~~l~~~~~~~~~~~lVv~~~~~t~tG~~~~----l~~I~~ia~~~g~~l~VD~A~~~~~~~~~~~~~~~~  150 (448)
                          |++++++.+.+     ....+|++.-.....|.+.|    +++|.++|++||+++++|+.+.+.--...-+.....
T Consensus       176 ----d~~~l~~~l~~-----~~iAaviiEPi~g~~G~~~~~~~~l~~l~~lc~~~g~llI~DEV~tGfgR~G~~~a~~~~  246 (404)
T d2byla1         176 ----DLPALERALQD-----PNVAAFMVEPIQGEAGVVVPDPGYLMGVRELCTRHQVLFIADEIQTGLARTGRWLAVDYE  246 (404)
T ss_dssp             ----CHHHHHHHHTS-----TTEEEEEECSSBTTTTSBCCCTTHHHHHHHHHHHHTCEEEEECTTTTTTTTSSSSGGGGG
T ss_pred             ----CHHHHHHhcCC-----CCeEEEEECCccCCCCCccCCHHHHHHHHHHHHhcCeEEEeeccccccccccccchhhhc
Confidence                88999999854     24555666655666676655    999999999999999999988653222222222223


Q ss_pred             CCCCccEEEECCccccCCC-CceEEEEEecc
Q psy14299        151 GINRANSVSWNPHKMLGAP-LQCSILLIKEK  180 (448)
Q Consensus       151 ~~~~aD~~~~s~hK~l~~P-~g~G~l~vr~~  180 (448)
                      ++. .|++++  -|.+++- ...|.++++++
T Consensus       247 gv~-PDi~~~--gK~l~gG~~p~~av~~~~~  274 (404)
T d2byla1         247 NVR-PDIVLL--GKALSGGLYPVSAVLCDDD  274 (404)
T ss_dssp             TCC-CSEEEE--CGGGGTTSSCCEEEEECHH
T ss_pred             CCC-CCEEEE--CchhhCCCccceeeeechh
Confidence            442 588865  6766653 45677777554

>d1ajsa_ c.67.1.1 (A:) Aspartate aminotransferase, AAT {Pig (Sus scrofa), cytosolic form [TaxId: 9823]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: AAT-like
domain: Aspartate aminotransferase, AAT
species: Pig (Sus scrofa), cytosolic form [TaxId: 9823]

Probab=99.29  E-value=7.3e-11  Score=117.50  Aligned_cols=164  Identities=12%  Similarity=0.025  Sum_probs=109.0

Q ss_pred             EEEeCcHHHHHHHHHHHHHHhcCCcccccCCCCCCCeEEEecCCCchHHHHHHHHhCCCCCcEEEEec--CCCCCcCHHH
Q psy14299          5 PFLLPGGSISNMYSICLARYRLDPDTKRKGLSHLPPLCMFTSEDSHYSMLKAAHWLGIGMDNVIRVKT--NERGQMICSF   82 (448)
Q Consensus         5 g~~t~ggT~an~~al~~a~~~~~~~~~~~G~~~~~~~~Vl~~~~~H~s~~~~~~~~g~~~~~v~~v~~--~~~g~id~e~   82 (448)
                      .+.|++++.+...+......-+.      . ...|++.|++++..+......++..|...  +...+.  +.....|.+.
T Consensus       102 ~~~~~~~~~~~~~~~~~l~~~~~------~-~~~pGd~Vlv~~P~y~~y~~~~~~~G~~~--v~~~~~~~~~~~~~d~~~  172 (412)
T d1ajsa_         102 GVQSLGGTGALRIGAEFLARWYN------G-TNNKDTPVYVSSPTWENHNGVFTTAGFKD--IRSYRYWDTEKRGLDLQG  172 (412)
T ss_dssp             EEEEEHHHHHHHHHHHHHHHHSS------S-SSCCCSCEEEEESCCTHHHHHHHHTTCSC--EEEEECEETTTTEECHHH
T ss_pred             eecccchhhHHHHHHHHHHHHhh------h-cCCCCCEEEEeCCcchhhHHHHHHcCCeE--EEeecccccccccccHHH
Confidence            56678888887666554433210      0 01478889999999999999999999832  222232  3345788888


Q ss_pred             HHHHHHHhhhcCCCcEEEEEeccCCccccccC---HHHHHHHHHHcCCEEEEecccccccccccch----hhhhcCCCCc
Q psy14299         83 LEQTIQTSLAEKKIPLFVNATAGTTVLGAFDP---LDEIATVCEKYDLWMHVDACWGGSLIFSEKY----SFVLKGINRA  155 (448)
Q Consensus        83 Le~~l~~~~~~~~~~~lVv~~~~~t~tG~~~~---l~~I~~ia~~~g~~l~VD~A~~~~~~~~~~~----~~~~~~~~~a  155 (448)
                      +++.+..   ...++++++++.++|+||.+.+   +++|+++|++||++++.|.+|..........    .........-
T Consensus       173 ~~~~~~~---~~~~~~~il~~~P~NPTG~v~s~e~~~~i~~la~~~~~~ii~De~Y~~l~~~~~~~~~~~~~~~~~~~~~  249 (412)
T d1ajsa_         173 FLSDLEN---APEFSIFVLHACAHNPTGTDPTPEQWKQIASVMKRRFLFPFFDSAYQGFASGNLEKDAWAIRYFVSEGFE  249 (412)
T ss_dssp             HHHHHHH---SCTTCEEEEESSSCTTTCCCCCHHHHHHHHHHHHHHTCEEEEEESCTTTTTSCHHHHTHHHHHHHHTTCC
T ss_pred             HHHHHHh---ccCCcEEEEecCCCCCcCCCCCHHHHHHHHHHHhhCCEEEEecHhhhhhhcCCcccchhhhhhhhhhccc
Confidence            8887765   2346788999999999998765   8889999999999999999988654421110    0011111123


Q ss_pred             cEEEECCccccCCCC-ceEEEEEecc
Q psy14299        156 NSVSWNPHKMLGAPL-QCSILLIKEK  180 (448)
Q Consensus       156 D~~~~s~hK~l~~P~-g~G~l~vr~~  180 (448)
                      .++..++.|.++.|. .+|.+++...
T Consensus       250 ~~~~~s~sk~~~~~G~R~G~~~~~~~  275 (412)
T d1ajsa_         250 LFCAQSFSKNFGLYNERVGNLTVVAK  275 (412)
T ss_dssp             EEEEEECTTTSCCGGGCEEEEEEECS
T ss_pred             ccccccccccccCCCCCccccccchh
Confidence            456667777766663 4777766543

>d1z7da1 c.67.1.4 (A:7-410) Ornithine aminotransferase {Plasmodium yoelii yoelii [TaxId: 73239]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: GABA-aminotransferase-like
domain: Ornithine aminotransferase
species: Plasmodium yoelii yoelii [TaxId: 73239]

Probab=99.28  E-value=2.3e-09  Score=106.39  Aligned_cols=161  Identities=14%  Similarity=0.074  Sum_probs=87.0

Q ss_pred             cEEEeCcHHHHHHHHHHHHHHhcCCcccccCCCCCCCeEEEecCCCchHHHHHHHHhCCCC---------CcEEEEecCC
Q psy14299          4 KPFLLPGGSISNMYSICLARYRLDPDTKRKGLSHLPPLCMFTSEDSHYSMLKAAHWLGIGM---------DNVIRVKTNE   74 (448)
Q Consensus         4 ~g~~t~ggT~an~~al~~a~~~~~~~~~~~G~~~~~~~~Vl~~~~~H~s~~~~~~~~g~~~---------~~v~~v~~~~   74 (448)
                      .+.|+.+||+++..|+..+|......  ..+.. .....+-.....|..........+...         ..+..+|.+ 
T Consensus        98 ~v~~~~sgs~a~~~a~k~ar~~~~~~--~~~~~-~~~~~~~~~~~~hg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-  173 (404)
T d1z7da1          98 KVLMMNTGAEANETAYKLCRKWGYEV--KKIPE-NMAKIVVCKNNFSGRTLGCISASTTKKCTSNFGPFAPQFSKVPYD-  173 (404)
T ss_dssp             EEEEESSHHHHHHHHHHHHHHHHHHT--SCCCT-TCCEEEEETTC--------------------------CEEEECTT-
T ss_pred             eeeeeccccchHHHHHHHHHHHHhhc--ccccc-cccccccccccCCCCcccccccccccccccCCCCCCccccccccc-
Confidence            46799999999999998887642100  00100 011223333344433333333222110         123333333 


Q ss_pred             CCCcCHHHHHHHHHHhhhcCCCcEEEEEeccCCccccccC----HHHHHHHHHHcCCEEEEecccccccccccchhhhhc
Q psy14299         75 RGQMICSFLEQTIQTSLAEKKIPLFVNATAGTTVLGAFDP----LDEIATVCEKYDLWMHVDACWGGSLIFSEKYSFVLK  150 (448)
Q Consensus        75 ~g~id~e~Le~~l~~~~~~~~~~~lVv~~~~~t~tG~~~~----l~~I~~ia~~~g~~l~VD~A~~~~~~~~~~~~~~~~  150 (448)
                          +.+.++..+.+     ....+|++.-...+.|.+.|    +++|.++|++||+++++|+.+.+.--....+.....
T Consensus       174 ----~~~~l~~~~~~-----~~iAavi~EPi~g~~G~~~~~~~fl~~l~~lc~~~g~llI~DEV~tGfgRtG~~~~~e~~  244 (404)
T d1z7da1         174 ----DLEALEEELKD-----PNVCAFIVEPIQGEAGVIVPSDNYLQGVYDICKKYNVLFVADEVQTGLGRTGKLLCVHHY  244 (404)
T ss_dssp             ----CHHHHHHHHTS-----TTEEEEEECSSBSTTTSBCCCTTHHHHHHHHHHHTTCEEEEECTTTTTTTTSSSSGGGGG
T ss_pred             ----hHHHHHHHhcC-----CCEEEEEEEEEcCCCCCccCCHHHHHHHHHHHHHcCCEEEEEcCccCCCccccccccccc
Confidence                56666666543     24566777666667788777    999999999999999999998643221111222222


Q ss_pred             CCCCccEEEECCccccCCC-CceEEEEEecc
Q psy14299        151 GINRANSVSWNPHKMLGAP-LQCSILLIKEK  180 (448)
Q Consensus       151 ~~~~aD~~~~s~hK~l~~P-~g~G~l~vr~~  180 (448)
                      ++ ..|++++  .|.+++- ..+|++..+++
T Consensus       245 gv-~PDivt~--gK~l~gG~~p~~~v~~~~~  272 (404)
T d1z7da1         245 NV-KPDVILL--GKALSGGHYPISAVLANDD  272 (404)
T ss_dssp             TC-CCSEEEE--CGGGGTTSSCCEEEEECHH
T ss_pred             CC-CCCEEEE--cccccCCCCCcccccchHH
Confidence            44 3688875  6777542 44677777654

>d2gsaa_ c.67.1.4 (A:) Glutamate-1-semialdehyde aminomutase (aminotransferase) {Synechococcus sp., strain GR6 [TaxId: 1131]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: GABA-aminotransferase-like
domain: Glutamate-1-semialdehyde aminomutase (aminotransferase)
species: Synechococcus sp., strain GR6 [TaxId: 1131]

Probab=99.28  E-value=2e-10  Score=115.04  Aligned_cols=154  Identities=14%  Similarity=0.017  Sum_probs=94.5

Q ss_pred             cEEEeCcHHHHHHHHHHHHHHhcCCcccccCCCCCCCeEEEecCCCchHHHH-------HHHHhCCCC---------CcE
Q psy14299          4 KPFLLPGGSISNMYSICLARYRLDPDTKRKGLSHLPPLCMFTSEDSHYSMLK-------AAHWLGIGM---------DNV   67 (448)
Q Consensus         4 ~g~~t~ggT~an~~al~~a~~~~~~~~~~~G~~~~~~~~Vl~~~~~H~s~~~-------~~~~~g~~~---------~~v   67 (448)
                      .++|+++||+||-.|+..+|..-.           ...+|-.....|-...-       .....+...         .+.
T Consensus       110 ~v~f~~sGseA~e~Alk~ar~~t~-----------r~~ii~~~~~yHG~t~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~  178 (427)
T d2gsaa_         110 MVRFVNSGTEACMAVLRLMRAYTG-----------RDKIIKFEGCYHGHADMFLVKAGSGVATLGLPSSPGVPKKTTANT  178 (427)
T ss_dssp             EEEEESSHHHHHHHHHHHHHHHHC-----------CCEEEEETTCCCCSCGGGCSSCCHHHHHTTCCSCSSSCHHHHTTE
T ss_pred             cccccCCcHHHHHHHHHHHHHhcC-----------CCeEEEEecccccCcceeeeecCCcccccCCCCCCCCcccCccce
Confidence            468999999999999999987521           22334344444532111       111112210         123


Q ss_pred             EEEecCCCCCcCHHHHHHHHHHhhhcCCCcEEEEEeccCCccccccC----HHHHHHHHHHcCCEEEEeccccccccccc
Q psy14299         68 IRVKTNERGQMICSFLEQTIQTSLAEKKIPLFVNATAGTTVLGAFDP----LDEIATVCEKYDLWMHVDACWGGSLIFSE  143 (448)
Q Consensus        68 ~~v~~~~~g~id~e~Le~~l~~~~~~~~~~~lVv~~~~~t~tG~~~~----l~~I~~ia~~~g~~l~VD~A~~~~~~~~~  143 (448)
                      ...+.+     |++.+++.+++.   +.+..+|++.-.....|.+.|    +++|.++|++||+++++|+.+.+. ....
T Consensus       179 ~~~~~~-----~~~~le~~~~~~---~~~iaavi~Epi~g~~G~~~~~~~~l~~l~~lc~~~~~llI~DEv~tG~-r~g~  249 (427)
T d2gsaa_         179 LTTPYN-----DLEAVKALFAEN---PGEIAGVILEPIVGNSGFIVPDAGFLEGLREITLEHDALLVFDEVMTGF-RIAY  249 (427)
T ss_dssp             EEECTT-----CHHHHHHHHTTS---TTTEEEEEECSSBCSSSCBCCCTTHHHHHHHHHHHTTCEEEEECTTTBT-TTBT
T ss_pred             eccCcc-----hHHHHHHHHHhC---CCCeEEEEEcCCcCCCCCccCCHHHHHHHHHHHHHhceeeeeccccccc-eecc
Confidence            334433     899999999752   234667777776676788887    999999999999999999998753 2221


Q ss_pred             chhhhhcCCCCccEEEECCccccCCCCceEEEEEecc
Q psy14299        144 KYSFVLKGINRANSVSWNPHKMLGAPLQCSILLIKEK  180 (448)
Q Consensus       144 ~~~~~~~~~~~aD~~~~s~hK~l~~P~g~G~l~vr~~  180 (448)
                      .+.....++ ..|+++++  |.+++-...|.+..+++
T Consensus       250 ~~~~~~~gi-~PDi~~~g--K~lggG~p~~a~~~~~~  283 (427)
T d2gsaa_         250 GGVQEKFGV-TPDLTTLG--KIIGGGLPVGAYGGKRE  283 (427)
T ss_dssp             TCHHHHTTC-CCSEEEEC--GGGGTTSCCEEEEECHH
T ss_pred             cchHHhcCC-CHHHHhhh--hccCCCcceeeeeehHH
Confidence            122222234 36998875  44444334455666554

>d1vefa1 c.67.1.4 (A:9-395) Acetylornithine/acetyl-lysine aminotransferase ArgD {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: GABA-aminotransferase-like
domain: Acetylornithine/acetyl-lysine aminotransferase ArgD
species: Thermus thermophilus [TaxId: 274]

Probab=99.27  E-value=1.5e-10  Score=114.52  Aligned_cols=151  Identities=13%  Similarity=0.085  Sum_probs=96.7

Q ss_pred             EEEeCcHHHHHHHHHHHHHHhcCCcccccCCCCCCCeEEEecCCCchHHHHHHHHhCC---------CCCcEEEEecCCC
Q psy14299          5 PFLLPGGSISNMYSICLARYRLDPDTKRKGLSHLPPLCMFTSEDSHYSMLKAAHWLGI---------GMDNVIRVKTNER   75 (448)
Q Consensus         5 g~~t~ggT~an~~al~~a~~~~~~~~~~~G~~~~~~~~Vl~~~~~H~s~~~~~~~~g~---------~~~~v~~v~~~~~   75 (448)
                      ++|+++||+||-.|+..+|..-.           ...+|......|-....+....+-         ....+..+|.+  
T Consensus        99 v~f~~sGseA~e~Aik~Ar~~t~-----------r~~ii~~~~~yHG~t~~~~~~s~~~~~~~~~~p~~~~~~~~p~~--  165 (387)
T d1vefa1          99 VFPVNSGTEANEAALKFARAHTG-----------RKKFVAAMRGFSGRTMGSLSVTWEPKYREPFLPLVEPVEFIPYN--  165 (387)
T ss_dssp             EEEESSHHHHHHHHHHHHHHHHS-----------CCEEEEETTCCCCSSHHHHHTCCCHHHHGGGCSCSSCEEEECTT--
T ss_pred             eccccCchHHHHHHHHHHHhhcc-----------cceecccccCCCCCccceEeccCCccccCCCCCCCCCceEeCCC--
Confidence            68999999999999999987621           334444555556554444443321         11245566665  


Q ss_pred             CCcCHHHHHHHHHHhhhcCCCcEEEEEeccCCccccccC----HHHHHHHHHHcCCEEEEecccccccccccchhhhhcC
Q psy14299         76 GQMICSFLEQTIQTSLAEKKIPLFVNATAGTTVLGAFDP----LDEIATVCEKYDLWMHVDACWGGSLIFSEKYSFVLKG  151 (448)
Q Consensus        76 g~id~e~Le~~l~~~~~~~~~~~lVv~~~~~t~tG~~~~----l~~I~~ia~~~g~~l~VD~A~~~~~~~~~~~~~~~~~  151 (448)
                         |.+.|++.+++      .+..|++.-.....|...|    +++|.++|++||+++++|+.+.+.--....+.....+
T Consensus       166 ---d~~~l~~~~~~------~iAavi~EPi~g~~G~~~~~~~~l~~l~~lc~~~g~llI~DEV~tGfgR~G~~~~~~~~~  236 (387)
T d1vefa1         166 ---DVEALKRAVDE------ETAAVILEPVQGEGGVRPATPEFLRAAREITQEKGALLILDEIQTGMGRTGKRFAFEHFG  236 (387)
T ss_dssp             ---CHHHHHHHCCT------TEEEEEECSEETTTTSEECCHHHHHHHHHHHHHHTCEEEEECTTTTTTTTSSSSTHHHHT
T ss_pred             ---CHHHHHHhcCC------CeEEEEEECCCCCCCCccCCHHHHHHHHHHHHHcCceEEecccccccCccCCCcccccCC
Confidence               78999988854      3556777655555677766    9999999999999999999887531111111111123


Q ss_pred             CCCccEEEECCccccCCCCceEEEEEecc
Q psy14299        152 INRANSVSWNPHKMLGAPLQCSILLIKEK  180 (448)
Q Consensus       152 ~~~aD~~~~s~hK~l~~P~g~G~l~vr~~  180 (448)
                      + ..|++++  -|.+++-...+.+..+++
T Consensus       237 v-~PDi~~~--gK~l~gG~~~~~~~~~~~  262 (387)
T d1vefa1         237 I-VPDILTL--AKALGGGVPLGVAVMREE  262 (387)
T ss_dssp             C-CCSEEEE--CGGGGTTSSCEEEEEEHH
T ss_pred             c-CCceeee--cccCCCCcccccccccee
Confidence            3 3688887  466544444566666554

>d7aata_ c.67.1.1 (A:) Aspartate aminotransferase, AAT {Chicken (Gallus gallus), mitochondria [TaxId: 9031]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: AAT-like
domain: Aspartate aminotransferase, AAT
species: Chicken (Gallus gallus), mitochondria [TaxId: 9031]

Probab=99.26  E-value=5.9e-11  Score=117.76  Aligned_cols=136  Identities=10%  Similarity=-0.012  Sum_probs=97.2

Q ss_pred             CCeEEEecCCCchHHHHHHHHhCCCCCcEEEEecC--CCCCcCHHHHHHHHHHhhhcCCCcEEEEEeccCCccccccC--
Q psy14299         39 PPLCMFTSEDSHYSMLKAAHWLGIGMDNVIRVKTN--ERGQMICSFLEQTIQTSLAEKKIPLFVNATAGTTVLGAFDP--  114 (448)
Q Consensus        39 ~~~~Vl~~~~~H~s~~~~~~~~g~~~~~v~~v~~~--~~g~id~e~Le~~l~~~~~~~~~~~lVv~~~~~t~tG~~~~--  114 (448)
                      |++.|++++..+......++..|.   +++.+|..  .++.+|++.+++.+..   ..+++++++++.++|+||.+.+  
T Consensus       122 pGd~Vlv~~P~y~~y~~~~~~~g~---~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~iii~~p~NPTG~~~s~e  195 (401)
T d7aata_         122 FSRDVYLPKPSWGNHTPIFRDAGL---QLQAYRYYDPKTCSLDFTGAMEDISK---IPEKSIILLHACAHNPTGVDPRQE  195 (401)
T ss_dssp             TCCEEEEEESCCTTHHHHHHHTTC---EEEEEECEETTTTEECHHHHHHHHTT---SCTTCEEEEESSSCTTTCCCCCHH
T ss_pred             CCceEEEecCCCcchhhHHHHcCC---eEEEEeccccccccccHHHHHHHHhc---CCCceEEEEecCCCCCccccCCHH
Confidence            788899999999999999999999   78888874  3567899988888754   2346789999999999998754  


Q ss_pred             -HHHHHHHHHHcCCEEEEecccccccccccchh----hhhcCCCCccEEEECCccccCCCC-ceEEEEEecc
Q psy14299        115 -LDEIATVCEKYDLWMHVDACWGGSLIFSEKYS----FVLKGINRANSVSWNPHKMLGAPL-QCSILLIKEK  180 (448)
Q Consensus       115 -l~~I~~ia~~~g~~l~VD~A~~~~~~~~~~~~----~~~~~~~~aD~~~~s~hK~l~~P~-g~G~l~vr~~  180 (448)
                       +++|.++|++|+++++.|.+|....+......    ........--.+..++.|.++.|. -+|++.....
T Consensus       196 ~~~~l~~~a~~~~~~ii~De~Y~~l~~~~~~~~~~~~~~~~~~~~~~~~~~s~sk~~~~~G~RiG~~~~~~~  267 (401)
T d7aata_         196 QWKELASVVKKRNLLAYFDMAYQGFASGDINRDAWALRHFIEQGIDVVLSQSYAKNMGLYGERAGAFTVICR  267 (401)
T ss_dssp             HHHHHHHHHHHTTCEEEEEESCTTTTTSCHHHHTHHHHHHHHTTCCCEEEEECTTTSCCGGGCEEEEEEECS
T ss_pred             HHHHHHHHHhcceEEEEEeccchhhhcCCcccchhhhhhhhhhhcccceeEeccccceeeccccceeecchH
Confidence             78899999999999999999987654211100    000111001144556777666553 4666666543

>d1cl1a_ c.67.1.3 (A:) Cystathionine beta-lyase, CBL {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: Cystathionine synthase-like
domain: Cystathionine beta-lyase, CBL
species: Escherichia coli [TaxId: 562]

Probab=99.24  E-value=5.6e-10  Score=109.98  Aligned_cols=145  Identities=11%  Similarity=0.052  Sum_probs=106.7

Q ss_pred             cEEEeCcHHHHHHHHHHHHHHhcCCcccccCCCCCCCeEEEecCCCchHHHHHHHHh-CCCCCcEEEEecCCCCCcCHHH
Q psy14299          4 KPFLLPGGSISNMYSICLARYRLDPDTKRKGLSHLPPLCMFTSEDSHYSMLKAAHWL-GIGMDNVIRVKTNERGQMICSF   82 (448)
Q Consensus         4 ~g~~t~ggT~an~~al~~a~~~~~~~~~~~G~~~~~~~~Vl~~~~~H~s~~~~~~~~-g~~~~~v~~v~~~~~g~id~e~   82 (448)
                      .++.+++|..|+..++.+...              +++.|+++..-+......++.. .-....+..+...     |.++
T Consensus        75 ~a~~~~SGMaAi~~~l~~l~~--------------~Gd~iv~~~~~Yg~T~~l~~~~l~~~Gi~~~~~d~~-----d~~~  135 (391)
T d1cl1a_          75 GCVLFPCGAAAVANSILAFIE--------------QGDHVLMTNTAYEPSQDFCSKILSKLGVTTSWFDPL-----IGAD  135 (391)
T ss_dssp             EEEEESSHHHHHHHHHHHHCC--------------TTCEEEEETTSCHHHHHHHHHTGGGGTCEEEEECTT-----CGGG
T ss_pred             cEEEeccccceeeehhhcccC--------------CCCeEEEecccccchhhhhhhcccccccccccccCc-----cccc
Confidence            577888998888777766543              5678999999998877666532 2111156666543     6777


Q ss_pred             HHHHHHHhhhcCCCcEEEEEeccCCccccccCHHHHHHHHHHc--CCEEEEecccccccccccchhhhhcCCCCccEEEE
Q psy14299         83 LEQTIQTSLAEKKIPLFVNATAGTTVLGAFDPLDEIATVCEKY--DLWMHVDACWGGSLIFSEKYSFVLKGINRANSVSW  160 (448)
Q Consensus        83 Le~~l~~~~~~~~~~~lVv~~~~~t~tG~~~~l~~I~~ia~~~--g~~l~VD~A~~~~~~~~~~~~~~~~~~~~aD~~~~  160 (448)
                      +++++++      ++++|.+..++|++..+.||++|+++|+++  |+.++||.+++.....-+ ...      ++|+++.
T Consensus       136 ~~~~i~~------~t~~i~~EtpsNP~l~v~Di~~i~~~a~~~~~g~~~vVDnT~atP~~~~P-l~~------GaDivvh  202 (391)
T d1cl1a_         136 IVKHLQP------NTKIVFLESPGSITMEVHDVPAIVAAVRSVVPDAIIMIDNTWAAGVLFKA-LDF------GIDVSIQ  202 (391)
T ss_dssp             GGGTCCT------TEEEEEEESSCTTTCCCCCHHHHHHHHHHHCTTCEEEEECTTTTTTSSCG-GGG------TCSEEEE
T ss_pred             ccccccc------ccceeeecccCcccccccccHHHHHHHHhccCCcEEEEeccccchhhhcc-ccc------ccceEEe
Confidence            8877754      589999999999999999999999999775  999999999887554222 111      4899999


Q ss_pred             CCccccCCCCc--eEEEEEeccc
Q psy14299        161 NPHKMLGAPLQ--CSILLIKEKG  181 (448)
Q Consensus       161 s~hK~l~~P~g--~G~l~vr~~~  181 (448)
                      |..|++++...  .|++ +.++.
T Consensus       203 S~TKy~~GhsdvlgG~v-v~~~~  224 (391)
T d1cl1a_         203 AATKYLVGHSDAMIGTA-VCNAR  224 (391)
T ss_dssp             ETTTTTTCSSSCCCEEE-EECTT
T ss_pred             ecchhccccccccccce-ecccc
Confidence            99999998754  3444 43443

>d1pffa_ c.67.1.3 (A:) Methionine gamma-lyase, MGL {Trichomonas vaginalis, MGL2 [TaxId: 5722]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: Cystathionine synthase-like
domain: Methionine gamma-lyase, MGL
species: Trichomonas vaginalis, MGL2 [TaxId: 5722]

Probab=99.22  E-value=5.2e-10  Score=107.96  Aligned_cols=142  Identities=8%  Similarity=0.031  Sum_probs=106.0

Q ss_pred             cEEEeCcHHHHHHHHHHHHHHhcCCcccccCCCCCCCeEEEecCCCchHHHHH----HHHhCCCCCcEEEEecCCCCCcC
Q psy14299          4 KPFLLPGGSISNMYSICLARYRLDPDTKRKGLSHLPPLCMFTSEDSHYSMLKA----AHWLGIGMDNVIRVKTNERGQMI   79 (448)
Q Consensus         4 ~g~~t~ggT~an~~al~~a~~~~~~~~~~~G~~~~~~~~Vl~~~~~H~s~~~~----~~~~g~~~~~v~~v~~~~~g~id   79 (448)
                      .++.+++|..|+..++....+              +++.|++++.-+......    .+..|+   ++..++..     |
T Consensus        15 ~a~~~sSGMaAi~~~l~~ll~--------------~Gd~iv~~~~~Yg~t~~~~~~~l~~~gi---~~~~~d~~-----d   72 (331)
T d1pffa_          15 ACAATASGMGAIAASVWTFLK--------------AGDHLISDDCLYGCTHALFEHQLRKFGV---EVDFIDMA-----V   72 (331)
T ss_dssp             EEEEESSHHHHHHHHHHHHCC--------------TTCEEEEESCCCHHHHHHHHTHHHHTTC---EEEEECTT-----S
T ss_pred             eEEEECCHHHHHHHHHHHHhC--------------CCCEEEEeCCCchHHHHHHHHHHHhcCe---EEEEeccc-----c
Confidence            467789998888777766544              667788887777654433    445566   68777765     8


Q ss_pred             HHHHHHHHHHhhhcCCCcEEEEEeccCCccccccCHHHHHHHH-HHcCCEEEEecccccccccccchhhhhcCCCCccEE
Q psy14299         80 CSFLEQTIQTSLAEKKIPLFVNATAGTTVLGAFDPLDEIATVC-EKYDLWMHVDACWGGSLIFSEKYSFVLKGINRANSV  158 (448)
Q Consensus        80 ~e~Le~~l~~~~~~~~~~~lVv~~~~~t~tG~~~~l~~I~~ia-~~~g~~l~VD~A~~~~~~~~~~~~~~~~~~~~aD~~  158 (448)
                      ++.+++++++      ++++|.+..++|++..+.|++++++++ |++|+.++||-+++.....-+ ..   .   ++|++
T Consensus        73 ~~~~~~~i~~------~t~~i~~Es~~np~~~v~d~~~~~~~~a~~~~~~~vVDnT~atp~~~~p-l~---~---GaDiV  139 (331)
T d1pffa_          73 PGNIEKHLKP------NTRIVYFETPANPTLKVIDIEDAVKQARKQKDILVIVDNTFASPILTNP-LD---L---GVDIV  139 (331)
T ss_dssp             TTHHHHTCCT------TEEEEEEESSCTTTCCCCCHHHHHHHHTTSSSCEEEEECTTTHHHHCCG-GG---G---TCSEE
T ss_pred             hhhHhhhccc------ccceeeeecccccccccccchhhhhhhhcccCceEEeeccccccccccc-cc---c---CCCEE
Confidence            8889988865      589999999999999999999999985 678999999998876544222 11   1   48999


Q ss_pred             EECCccccCCCCc--eEEEEEecc
Q psy14299        159 SWNPHKMLGAPLQ--CSILLIKEK  180 (448)
Q Consensus       159 ~~s~hK~l~~P~g--~G~l~vr~~  180 (448)
                      +.|..|++++...  .|.++.+++
T Consensus       140 v~S~TKy~~Gh~d~~~G~v~~~~~  163 (331)
T d1pffa_         140 VHSATKYINGHTDVVAGLVCSRAD  163 (331)
T ss_dssp             EEETTTTTSSSSSCCCEEEEECHH
T ss_pred             EecchhhcCCCCcccccccccccc
Confidence            9999999987533  355555443

>d2q7wa1 c.67.1.1 (A:1-396) Aspartate aminotransferase, AAT {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: AAT-like
domain: Aspartate aminotransferase, AAT
species: Escherichia coli [TaxId: 562]

Probab=99.17  E-value=2.5e-10  Score=112.93  Aligned_cols=158  Identities=10%  Similarity=-0.008  Sum_probs=106.7

Q ss_pred             EEEeCcHHHHHHHHHHHHHHhcCCcccccCCCCCCCeEEEecCCCchHHHHHHHHhCCCCCcEEEEecCC--CCCcCHHH
Q psy14299          5 PFLLPGGSISNMYSICLARYRLDPDTKRKGLSHLPPLCMFTSEDSHYSMLKAAHWLGIGMDNVIRVKTNE--RGQMICSF   82 (448)
Q Consensus         5 g~~t~ggT~an~~al~~a~~~~~~~~~~~G~~~~~~~~Vl~~~~~H~s~~~~~~~~g~~~~~v~~v~~~~--~g~id~e~   82 (448)
                      .+.|.+|+.+..+++......            .+++.|++++.........++..|.   +++.+|...  ++..+.+.
T Consensus        97 ~~~~~~~~~~~~l~~~~l~~~------------~~gd~Vlvp~P~y~~y~~~~~~~g~---~~~~~~~~~~~~~~~~~~~  161 (396)
T d2q7wa1          97 TAQTPGGTGALRVAADFLAKN------------TSVKRVWVSNPSWPNHKSVFNSAGL---EVREYAYYDAENHTLDFDA  161 (396)
T ss_dssp             EEEESHHHHHHHHHHHHHHHH------------SCCCEEEEEESCCTHHHHHHHHTTC---EEEEEECEETTTTEECHHH
T ss_pred             eeccchHHHHHHHHHHHHhhc------------ccceEEEEecCCCccchHHHHHcCC---eeEecccccccccccccch
Confidence            445677776655554433222            2778899999999999999999999   788888653  44567777


Q ss_pred             HHHHHHHhhhcCCCcEEEEEeccCCccccccC---HHHHHHHHHHcCCEEEEecccccccccccchhhh---hcCCCCcc
Q psy14299         83 LEQTIQTSLAEKKIPLFVNATAGTTVLGAFDP---LDEIATVCEKYDLWMHVDACWGGSLIFSEKYSFV---LKGINRAN  156 (448)
Q Consensus        83 Le~~l~~~~~~~~~~~lVv~~~~~t~tG~~~~---l~~I~~ia~~~g~~l~VD~A~~~~~~~~~~~~~~---~~~~~~aD  156 (448)
                      +++.+..   ...++++++++.++|+||...+   +++|+++|++|+++++.|.+|.......+.....   ......-.
T Consensus       162 ~~~~~~~---~~~~~~~i~~~~P~NPTG~~~s~e~~~~l~~la~~~~~~ii~De~Y~~l~~~~~~~~~~~~~~~~~~~~~  238 (396)
T d2q7wa1         162 LINSLNE---AQAGDVVLFHGCCHNPTGIDPTLEQWQTLAQLSVEKGWLPLFDFAYQGFARGLEEDAEGLRAFAAMHKEL  238 (396)
T ss_dssp             HHHHHTT---CCTTCEEEEECSSCTTTCCCCCHHHHHHHHHHHHHHTCEEEEEESCTTSSSCHHHHTHHHHHHHHHCSCE
T ss_pred             HHHHHHH---hccCcEEEEecCCcCCcCeecCHHHHHHHHHHHhcCCeEEEEeccccccccCCccCchHhhhhhhhcccc
Confidence            7776644   2346788999999999998755   6788999999999999999998665422111100   11111123


Q ss_pred             EEEECCccccCCC-CceEEEEEecc
Q psy14299        157 SVSWNPHKMLGAP-LQCSILLIKEK  180 (448)
Q Consensus       157 ~~~~s~hK~l~~P-~g~G~l~vr~~  180 (448)
                      .+..++.|.++.| .-+|.+.+...
T Consensus       239 ~~~~s~sk~~~~~G~R~G~~~~~~~  263 (396)
T d2q7wa1         239 IVASSYSKNFGLYNERVGACTLVAA  263 (396)
T ss_dssp             EEEEECTTTTTCGGGCCEEEEEECS
T ss_pred             cccccccccccccCCCccccccchh
Confidence            5556677776655 34677666553

>d2ay1a_ c.67.1.1 (A:) Aromatic aminoacid aminotransferase, AroAT {Paracoccus denitrificans [TaxId: 266]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: AAT-like
domain: Aromatic aminoacid aminotransferase, AroAT
species: Paracoccus denitrificans [TaxId: 266]

Probab=99.16  E-value=3.1e-10  Score=112.00  Aligned_cols=157  Identities=18%  Similarity=0.100  Sum_probs=105.8

Q ss_pred             cEEEeCcHHHHHHHHHHHHHHhcCCcccccCCCCCCCeEEEecCCCchHHHHHHHHhCCCCCcEEEEecC--CCCCcCHH
Q psy14299          4 KPFLLPGGSISNMYSICLARYRLDPDTKRKGLSHLPPLCMFTSEDSHYSMLKAAHWLGIGMDNVIRVKTN--ERGQMICS   81 (448)
Q Consensus         4 ~g~~t~ggT~an~~al~~a~~~~~~~~~~~G~~~~~~~~Vl~~~~~H~s~~~~~~~~g~~~~~v~~v~~~--~~g~id~e   81 (448)
                      ..+.|+||+.+..+++......            .+++.|+++..........++..|.   +++.++..  .++..+.+
T Consensus        93 ~~~~~~~~~~~~~l~~~~~~~~------------~~gd~V~~p~p~~~~y~~~~~~~g~---~~v~~~~~~~~~~~~~~~  157 (394)
T d2ay1a_          93 ATLATVGGTGALRQALELARMA------------NPDLRVFVSDPTWPNHVSIMNFMGL---PVQTYRYFDAETRGVDFE  157 (394)
T ss_dssp             EEEEEEHHHHHHHHHHHHHHHH------------CTTCCEEEEESCCHHHHHHHHHHTC---CEEEEECEETTTTEECHH
T ss_pred             cceeccCchHHHHHHHHHhhhc------------CCceEEEEecccccchHHHHHHcCC---EEEEecccchhcccccch
Confidence            4567777776655554433322            2677899999999999999999999   78888764  34566777


Q ss_pred             HHHHHHHHhhhcCCCcEEEEEeccCCccccccC---HHHHHHHHHHcCCEEEEecccccccccccchhh-----hhcCCC
Q psy14299         82 FLEQTIQTSLAEKKIPLFVNATAGTTVLGAFDP---LDEIATVCEKYDLWMHVDACWGGSLIFSEKYSF-----VLKGIN  153 (448)
Q Consensus        82 ~Le~~l~~~~~~~~~~~lVv~~~~~t~tG~~~~---l~~I~~ia~~~g~~l~VD~A~~~~~~~~~~~~~-----~~~~~~  153 (448)
                      ++++.....   .+++++++++.++|+||...+   +++|+++|++|+++++.|.+|.......+....     ..... 
T Consensus       158 ~~~~~~~~~---~~~~~i~~~~~p~NPTG~~~s~e~~~~l~~la~~~~~~ii~De~Y~~l~~~~~~~~~~~~~~~~~~~-  233 (394)
T d2ay1a_         158 GMKADLAAA---KKGDMVLLHGCCHNPTGANLTLDQWAEIASILEKTGALPLIDLAYQGFGDGLEEDAAGTRLIASRIP-  233 (394)
T ss_dssp             HHHHHHHTC---CTTCEEEEESSSCTTTCCCCCHHHHHHHHHHHHHHTCEEEEEECCTTSSSCHHHHHHHHHHHHHHCS-
T ss_pred             hHHHHHhhc---ccCcEEEEeCCCCCCCCCCCCHHHHHHHHHHhhcceEEEEEeccchhhcccccccchhhhhhhhhcc-
Confidence            777776542   345678888899999998755   788999999999999999999876543211110     00111 


Q ss_pred             CccEEEECCccccCCC-CceEEEEEecc
Q psy14299        154 RANSVSWNPHKMLGAP-LQCSILLIKEK  180 (448)
Q Consensus       154 ~aD~~~~s~hK~l~~P-~g~G~l~vr~~  180 (448)
                       --.+..++.|.++.| ..+|.+.+...
T Consensus       234 -~~~~~~s~sk~~~~~G~R~G~~~~~~~  260 (394)
T d2ay1a_         234 -EVLIAASCSKNFGIYRERTGCLLALCA  260 (394)
T ss_dssp             -SEEEEEECTTTTTCGGGCEEEEEEECS
T ss_pred             -cccccccccccccCCcccccchhhchh
Confidence             123344566665544 34566666543

>d1e5ea_ c.67.1.3 (A:) Methionine gamma-lyase, MGL {Trichomonas vaginalis, MGL1 [TaxId: 5722]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: Cystathionine synthase-like
domain: Methionine gamma-lyase, MGL
species: Trichomonas vaginalis, MGL1 [TaxId: 5722]

Probab=99.16  E-value=5.9e-09  Score=102.62  Aligned_cols=142  Identities=10%  Similarity=0.033  Sum_probs=105.4

Q ss_pred             cEEEeCcHHHHHHHHHHHHHHhcCCcccccCCCCCCCeEEEecCCCchHHHHH----HHHhCCCCCcEEEEecCCCCCcC
Q psy14299          4 KPFLLPGGSISNMYSICLARYRLDPDTKRKGLSHLPPLCMFTSEDSHYSMLKA----AHWLGIGMDNVIRVKTNERGQMI   79 (448)
Q Consensus         4 ~g~~t~ggT~an~~al~~a~~~~~~~~~~~G~~~~~~~~Vl~~~~~H~s~~~~----~~~~g~~~~~v~~v~~~~~g~id   79 (448)
                      .++.+++|..|+..++.+...              +++.|++++..+......    ....|+   .+..+...     |
T Consensus        76 ~a~~~sSGmaAi~~~~l~l~~--------------~gd~vv~~~~~yg~t~~~~~~~~~~~gi---~~~~~d~~-----d  133 (394)
T d1e5ea_          76 ACVATSSGMGAIAATVLTILK--------------AGDHLISDECLYGCTHALFEHALTKFGI---QVDFINTA-----I  133 (394)
T ss_dssp             EEEEESSHHHHHHHHHHHHCC--------------TTCEEEEESCCCHHHHHHHHTHHHHTTC---EEEEECTT-----S
T ss_pred             ceeeeccchHHHHHHHHhhcc--------------cccccccccceeehhhHhHHHHhhccce---eeeccCCC-----C
Confidence            467788888888777655443              677888888877665444    334466   67777765     7


Q ss_pred             HHHHHHHHHHhhhcCCCcEEEEEeccCCccccccCHHHHHHHHH-HcCCEEEEecccccccccccchhhhhcCCCCccEE
Q psy14299         80 CSFLEQTIQTSLAEKKIPLFVNATAGTTVLGAFDPLDEIATVCE-KYDLWMHVDACWGGSLIFSEKYSFVLKGINRANSV  158 (448)
Q Consensus        80 ~e~Le~~l~~~~~~~~~~~lVv~~~~~t~tG~~~~l~~I~~ia~-~~g~~l~VD~A~~~~~~~~~~~~~~~~~~~~aD~~  158 (448)
                      ++++++++++      ++++|.+..++|++..+.|+++++++++ ++|+.++||-+++.....-| ...      ++|++
T Consensus       134 ~~~~~~~i~~------~t~lv~~Etp~NP~l~v~Di~~~~~~~~~~~g~~vvvDnT~atP~~~~P-l~~------GaDiV  200 (394)
T d1e5ea_         134 PGEVKKHMKP------NTKIVYFETPANPTLKIIDMERVCKDAHSQEGVLVIADNTFCSPMITNP-VDF------GVDVV  200 (394)
T ss_dssp             TTHHHHHCCT------TEEEEEEESSCTTTCCCCCHHHHHHHHHTSTTCEEEEECTTTCTTTCCG-GGG------TCSEE
T ss_pred             HHHHHHhhcc------cccEEEEeccCCcceeeehhhhhhhccccccCeEEEecCcccCcccCCc-hhc------CCCEE
Confidence            8889998865      5899999999999999999999998776 46899999998876554222 111      48999


Q ss_pred             EECCccccCCCCc--eEEEEEecc
Q psy14299        159 SWNPHKMLGAPLQ--CSILLIKEK  180 (448)
Q Consensus       159 ~~s~hK~l~~P~g--~G~l~vr~~  180 (448)
                      +.|..|++++...  .|++..+++
T Consensus       201 vhS~TKy~~GhsDv~~G~v~~~~~  224 (394)
T d1e5ea_         201 VHSATKYINGHTDVVAGLICGKAD  224 (394)
T ss_dssp             EEETTTTTTCSSCCCCEEEEECHH
T ss_pred             EechhhhcCCCcccccccccchhh
Confidence            9999999987643  455555443

>d2hoxa1 c.67.1.1 (A:1-425) Alliinase {Garlic (Allium sativum) [TaxId: 4682]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: AAT-like
domain: Alliinase
species: Garlic (Allium sativum) [TaxId: 4682]

Probab=99.15  E-value=5.6e-10  Score=111.50  Aligned_cols=144  Identities=7%  Similarity=-0.100  Sum_probs=99.3

Q ss_pred             EEEeCcHHHHHHHHHHHHHHhcCCcccccCCCCCCCeEEEecCCCchHHHHHHHHhCCCCCcEEEEecCCCCCcCHHHHH
Q psy14299          5 PFLLPGGSISNMYSICLARYRLDPDTKRKGLSHLPPLCMFTSEDSHYSMLKAAHWLGIGMDNVIRVKTNERGQMICSFLE   84 (448)
Q Consensus         5 g~~t~ggT~an~~al~~a~~~~~~~~~~~G~~~~~~~~Vl~~~~~H~s~~~~~~~~g~~~~~v~~v~~~~~g~id~e~Le   84 (448)
                      .++++|+|+++..++.+.....      ......|++.|+++...+..+...+++.+.   ....++      +|.+.++
T Consensus       126 IvvG~Gsteli~~~~~AL~~~~------~~~~~~pg~~Vv~~~P~y~~Y~~~~~~~~~---~~~~~~------~D~~~~~  190 (425)
T d2hoxa1         126 IVFGVGVTQLIHGLVISLSPNM------TATPDAPESKVVAHAPFYPVFREQTKYFDK---KGYVWA------GNAANYV  190 (425)
T ss_dssp             EEEESHHHHHHHHHHHHHSCCT------TTCTTSCCEEEEECSSCCHHHHHHHHHSCB---TTEEEE------EEGGGGT
T ss_pred             EEECCCHHHHHHHHHHHhcccc------ccccCCCCCEEEEecCccccHHHHHHHcCC---CCCccC------CCHHHHH
Confidence            7899999999888887764321      011113778899999999999888888876   333333      4666676


Q ss_pred             HHHHHhhhcCCCcEEEEEeccCCccccccCHHHHHHHHHHcCCEEEEecccccccc-cccchhhhhcCCCCccEEEECCc
Q psy14299         85 QTIQTSLAEKKIPLFVNATAGTTVLGAFDPLDEIATVCEKYDLWMHVDACWGGSLI-FSEKYSFVLKGINRANSVSWNPH  163 (448)
Q Consensus        85 ~~l~~~~~~~~~~~lVv~~~~~t~tG~~~~l~~I~~ia~~~g~~l~VD~A~~~~~~-~~~~~~~~~~~~~~aD~~~~s~h  163 (448)
                      +++++      ++++++++.|+|+||.+..       +-.+++++++|.+|....+ +.+       ....-+++..++.
T Consensus       191 ~~~~~------~~~ii~l~sPnNPtG~l~~-------~v~~~~~~I~DEaY~~~~f~~~~-------~~~~~~Ivl~S~S  250 (425)
T d2hoxa1         191 NVSNP------EQYIEMVTSPNNPEGLLRH-------AVIKGCKSIYDMVYYWPHYTPIK-------YKADEDILLFTMS  250 (425)
T ss_dssp             TCSCG------GGEEEEEESSCTTTCCCCC-------CSSTTCEEEEECTTCSTTTSCCC-------SCBCCSEEEEEHH
T ss_pred             hhCCC------CceEEEEECCCCCCcchhh-------hhhhCCEEEEeccccCccccchh-------hhcCCeEEEEeCH
Confidence            65543      5889999999999998632       2236899999999865332 111       1112368888999


Q ss_pred             cccCCCC-ceEEEEEeccchh
Q psy14299        164 KMLGAPL-QCSILLIKEKGLL  183 (448)
Q Consensus       164 K~l~~P~-g~G~l~vr~~~~~  183 (448)
                      |.++.|. -+|.+++.++.+.
T Consensus       251 K~fglaGlRiGw~i~~~~~i~  271 (425)
T d2hoxa1         251 KFTGHSGSRFGWALIKDESVY  271 (425)
T ss_dssp             HHTSCGGGCCEEEEECCHHHH
T ss_pred             HhccCcchheeeEEeCCHHHH
Confidence            9988663 4787777766543

>d1yaaa_ c.67.1.1 (A:) Aspartate aminotransferase, AAT {Baker's yeast (Saccharomyces cerevisiae), cytosolic form [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: AAT-like
domain: Aspartate aminotransferase, AAT
species: Baker's yeast (Saccharomyces cerevisiae), cytosolic form [TaxId: 4932]

Probab=99.14  E-value=1e-09  Score=109.06  Aligned_cols=136  Identities=11%  Similarity=-0.009  Sum_probs=98.5

Q ss_pred             CCeEEEecCCCchHHHHHHHHhCCCCCcEEEEecC--CCCCcCHHHHHHHHHHhhhcCCCcEEEEEeccCCccccccC--
Q psy14299         39 PPLCMFTSEDSHYSMLKAAHWLGIGMDNVIRVKTN--ERGQMICSFLEQTIQTSLAEKKIPLFVNATAGTTVLGAFDP--  114 (448)
Q Consensus        39 ~~~~Vl~~~~~H~s~~~~~~~~g~~~~~v~~v~~~--~~g~id~e~Le~~l~~~~~~~~~~~lVv~~~~~t~tG~~~~--  114 (448)
                      +++.|++++.........++..|.   .++.+|..  .++.++.+.++..+...   .+++++++++.++|+||...+  
T Consensus       123 ~gd~Vlip~P~~~~y~~~~~~~g~---~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~i~i~~P~NPTG~~~s~~  196 (412)
T d1yaaa_         123 PDKLVYLSKPTWANHMAIFENQGL---KTATYPYWANETKSLDLNGFLNAIQKA---PEGSIFVLHSCAHNPTGLDPTSE  196 (412)
T ss_dssp             TTCCEEEEESCCTTHHHHHHTTTC---CEEEEECEETTTTEECHHHHHHHHHHS---CTTCEEEEECSSCTTTCCCCCHH
T ss_pred             CCCEEecccccCchhHHHHHHcCC---ceecccccccccccccchhhhcccccC---CCceEEEEecCCCCCccccCCHH
Confidence            678899999999999999998888   68888864  35578888888888652   345788999999999998765  


Q ss_pred             -HHHHHHHHHHcCCEEEEecccccccccccchhh-------hhcCCCCccEEEECCccccCCC-CceEEEEEecc
Q psy14299        115 -LDEIATVCEKYDLWMHVDACWGGSLIFSEKYSF-------VLKGINRANSVSWNPHKMLGAP-LQCSILLIKEK  180 (448)
Q Consensus       115 -l~~I~~ia~~~g~~l~VD~A~~~~~~~~~~~~~-------~~~~~~~aD~~~~s~hK~l~~P-~g~G~l~vr~~  180 (448)
                       +++|+++|++++++++.|.+|............       .......--++..++.|.++.| .-+|++++..+
T Consensus       197 ~~~~i~~~a~~~~~~ii~De~Y~~l~~~~~~~~~~~~~~~~~~~~~~~~~i~~~s~SK~~~~~G~RiG~~~~~~~  271 (412)
T d1yaaa_         197 QWVQIVDAIASKNHIALFDTAYQGFATGDLDKDAYAVRLGVEKLSTVSPVFVCQSFAKNAGMYGERVGCFHLALT  271 (412)
T ss_dssp             HHHHHHHHHHHTTCEEEEEESCTTTSSSCHHHHTHHHHHHHHHTTTTCCEEEEEECTTTSCCGGGCEEEEEEECC
T ss_pred             HHHHHHhhhccCCEEEeecceeeecccCCcccchhhhhhhhhccccCCCeEEEEecCCccccCcCceEEEEEchh
Confidence             888999999999999999999865542111000       0001111126667889977654 45777777554

>d1zoda1 c.67.1.4 (A:3-433) Dialkylglycine decarboxylase {Pseudomonas cepacia [TaxId: 292]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: GABA-aminotransferase-like
domain: Dialkylglycine decarboxylase
species: Pseudomonas cepacia [TaxId: 292]

Probab=99.12  E-value=2.4e-08  Score=99.67  Aligned_cols=163  Identities=14%  Similarity=0.056  Sum_probs=90.5

Q ss_pred             cEEEeCcHHHHHHHHHHHHHHhcCCcccccCCCCCCCeEEEecCCCchHHHHHHHHhCCC--------CCcEEEEecCCC
Q psy14299          4 KPFLLPGGSISNMYSICLARYRLDPDTKRKGLSHLPPLCMFTSEDSHYSMLKAAHWLGIG--------MDNVIRVKTNER   75 (448)
Q Consensus         4 ~g~~t~ggT~an~~al~~a~~~~~~~~~~~G~~~~~~~~Vl~~~~~H~s~~~~~~~~g~~--------~~~v~~v~~~~~   75 (448)
                      .++|+++||+|+-.|+..||....           ...++-.....|-....+....+..        ......++....
T Consensus       102 ~v~f~~sGseA~e~Alk~Ar~~t~-----------r~~i~~~~~~yHG~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  170 (431)
T d1zoda1         102 RALLLSTGAESNEAAIRMAKLVTG-----------KYEIVGFAQSWHGMTGAAASATYSAGRKGVGPAAVGSFAIPAPFT  170 (431)
T ss_dssp             EEEEESCHHHHHHHHHHHHHHHHT-----------CCEEEEETTCCCCSSHHHHHTCCSSCCSSSCCCCTTEEEECCCCT
T ss_pred             eeeecccccchHHHHHHHHHHhcC-----------CcceeecccccccccchhhcccccccccccCCcccCceeeeeecc
Confidence            478999999999999999987621           3344555566665554443332211        112333432211


Q ss_pred             C---------CcCHHHHHHHHHHhhhcC-CCcEEEEEeccCCccccccC----HHHHHHHHHHcCCEEEEeccccccccc
Q psy14299         76 G---------QMICSFLEQTIQTSLAEK-KIPLFVNATAGTTVLGAFDP----LDEIATVCEKYDLWMHVDACWGGSLIF  141 (448)
Q Consensus        76 g---------~id~e~Le~~l~~~~~~~-~~~~lVv~~~~~t~tG~~~~----l~~I~~ia~~~g~~l~VD~A~~~~~~~  141 (448)
                      .         ..+.+.++.........+ ....+|++.-.....|.+.|    +++|.++|++||+++++|+.+.+..-.
T Consensus       171 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iAavi~EPi~g~~G~~~~~~~yl~~lr~lc~~~gillI~DEV~tG~gRt  250 (431)
T d1zoda1         171 YRPRFERNGAYDYLAELDYAFDLIDRQSSGNLAAFIAEPILSSGGIIELPDGYMAALKRKCEARGMLLILDEAQTGVGRT  250 (431)
T ss_dssp             TSCCCEETTEECHHHHHHHHHHHHHHHCCSCEEEEEECSEETTTTCEECCTTHHHHHHHHHHHHTCEEEEECTTTTTTTT
T ss_pred             cccccccccchhhhhhHHHHHHHHHHhccccccceeeccccccCCccCCCHHHHHHHHHHHHhcCceEEecccccccccc
Confidence            1         112334444433222222 24455666555555566655    999999999999999999988852211


Q ss_pred             ccchhhhhcCCCCccEEEECCccccCCCCceEEEEEecc
Q psy14299        142 SEKYSFVLKGINRANSVSWNPHKMLGAPLQCSILLIKEK  180 (448)
Q Consensus       142 ~~~~~~~~~~~~~aD~~~~s~hK~l~~P~g~G~l~vr~~  180 (448)
                      ...+.....++ ..|.++++  |.+++-...+.++.+++
T Consensus       251 G~~~~~~~~gv-~PDi~~~g--K~l~gG~p~~av~~~~~  286 (431)
T d1zoda1         251 GTMFACQRDGV-TPDILTLS--KTLGAGLPLAAIVTSAA  286 (431)
T ss_dssp             SSSSTHHHHTC-CCSEEEEC--HHHHTTSSCEEEEECHH
T ss_pred             ccccccccCCC-Ccchhccc--cccccccccceeeeeec
Confidence            11111111234 37888874  55444334455556554

>d1ohwa_ c.67.1.4 (A:) 4-aminobutyrate aminotransferase, GABA-aminotransferase {Pig (Sus scrofa) [TaxId: 9823]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: GABA-aminotransferase-like
domain: 4-aminobutyrate aminotransferase, GABA-aminotransferase
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=99.08  E-value=4.9e-09  Score=105.72  Aligned_cols=162  Identities=11%  Similarity=-0.015  Sum_probs=89.5

Q ss_pred             cEEEeCcHHHHHHHHHHHHHHhcCCcccc--------------cCCCCCCCe-EEEecCCCchHHHHHHHHhCCCC----
Q psy14299          4 KPFLLPGGSISNMYSICLARYRLDPDTKR--------------KGLSHLPPL-CMFTSEDSHYSMLKAAHWLGIGM----   64 (448)
Q Consensus         4 ~g~~t~ggT~an~~al~~a~~~~~~~~~~--------------~G~~~~~~~-~Vl~~~~~H~s~~~~~~~~g~~~----   64 (448)
                      .++|+++||+||-.|+..+|.....+.+.              ...++.++. +|-.....|-....+....|-..    
T Consensus       119 ~v~f~~sGseAve~Aik~Ar~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ii~~~~syHG~t~~a~s~tg~~~~~~~  198 (461)
T d1ohwa_         119 QLITMACGSCSNENAFKTIFMWYRSKERGQSAFSKEELETCMINQAPGCPDYSILSFMGAFHGRTMGCLATTHSKAIHKI  198 (461)
T ss_dssp             EEEEESSHHHHHHHHHHHHHHHHHHHHHTTCCCCHHHHHHHHTTCTTTSCCCEEEEETTCCCCSSHHHHHTCCSCHHHHT
T ss_pred             eeeeecchhhhhHHHHHHHHHHhhhcccCcccccchhhhhhhhccccCCCCceEEEecCCcCCCCcccccccCCcccccc
Confidence            47899999999999999887642110000              000112333 34445666765555544433210    


Q ss_pred             ----CcEEEEecCC-CC-------------CcCHHHHHHHHHHhhhcCCCcEEEEEeccCCccccccC----HHHHHHHH
Q psy14299         65 ----DNVIRVKTNE-RG-------------QMICSFLEQTIQTSLAEKKIPLFVNATAGTTVLGAFDP----LDEIATVC  122 (448)
Q Consensus        65 ----~~v~~v~~~~-~g-------------~id~e~Le~~l~~~~~~~~~~~lVv~~~~~t~tG~~~~----l~~I~~ia  122 (448)
                          ......+... ..             ..+.+++++.+......+..+.+|++.-.....|.+.|    +++|.++|
T Consensus       199 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~iAavivEPi~g~~G~~~~~~~fl~~lr~lc  278 (461)
T d1ohwa_         199 DIPSFDWPIAPFPRLKYPLEEFVKENQQEEARCLEEVEDLIVKYRKKKKTVAGIIVEPIQSEGGDNHASDDFFRKLRDIS  278 (461)
T ss_dssp             TCCCCCCCEECCCCCCSSGGGCHHHHHHHHHHHHHHHHHHHHHHHHTTCCEEEEEECSSBCTTTCBCCCHHHHHHHHHHH
T ss_pred             cccccCCcccccccccccccccccccchhhhhhHHHHHHHHHHHHhCCCccceeeeccccccccccCchhhHHHHHHHHH
Confidence                0011111110 00             12356677777654344445666777766666676544    89999999


Q ss_pred             HHcCCEEEEecccccccccccchhhhhcCCC-CccEEEECCccccC
Q psy14299        123 EKYDLWMHVDACWGGSLIFSEKYSFVLKGIN-RANSVSWNPHKMLG  167 (448)
Q Consensus       123 ~~~g~~l~VD~A~~~~~~~~~~~~~~~~~~~-~aD~~~~s~hK~l~  167 (448)
                      ++||+++++|+.+.+.--...-+.....+++ ..|.++++  |.++
T Consensus       279 ~~~gillI~DEV~tG~gRtG~~~~~e~~gi~~~PDiv~~g--K~l~  322 (461)
T d1ohwa_         279 RKHGCAFLVDEVQTGGGSTGKFWAHEHWGLDDPADVMTFS--KKMM  322 (461)
T ss_dssp             HHTTCEEEEECTTTCSSTTSSSSGGGGGCCSSCCSEEEEC--GGGS
T ss_pred             HhhCcceeccccccccccccccccccccccccCchhhhhh--hccc
Confidence            9999999999988653221111111112332 36888764  7665

>d1s0aa_ c.67.1.4 (A:) Adenosylmethionine-8-amino-7-oxononanoate aminotransferase, BioA {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: GABA-aminotransferase-like
domain: Adenosylmethionine-8-amino-7-oxononanoate aminotransferase, BioA
species: Escherichia coli [TaxId: 562]

Probab=99.05  E-value=3.5e-08  Score=98.43  Aligned_cols=165  Identities=14%  Similarity=0.081  Sum_probs=90.8

Q ss_pred             cEEEeCcHHHHHHHHHHHHHHhcCCcccccCCCCCCCeEEEecCCCchHHHHHHHHhCCC----------CCcEEEEecC
Q psy14299          4 KPFLLPGGSISNMYSICLARYRLDPDTKRKGLSHLPPLCMFTSEDSHYSMLKAAHWLGIG----------MDNVIRVKTN   73 (448)
Q Consensus         4 ~g~~t~ggT~an~~al~~a~~~~~~~~~~~G~~~~~~~~Vl~~~~~H~s~~~~~~~~g~~----------~~~v~~v~~~   73 (448)
                      .++|+++||+|+-.|+..+|....    ++|-  ....+|......|-....+....+..          .......|..
T Consensus       105 ~v~f~~sGseA~e~A~k~ar~~~~----~~g~--~~~~ii~~~~~yHG~t~~a~~~t~~~~~~~~~~~~~~~~~~~~~~~  178 (429)
T d1s0aa_         105 CVFLADSGSVAVEVAMKMALQYWQ----AKGE--ARQRFLTFRNGYHGDTFGAMSVCDPDNSMHSLWKGYLPENLFAPAP  178 (429)
T ss_dssp             EEEEESSHHHHHHHHHHHHHHHHH----HHTC--CCCEEEEETTCCCCSSHHHHTTSCTTTTTGGGGTTTSCCCEEECCC
T ss_pred             eeeeccccccchhhhhhhhhheee----cccc--cccEEEEecCCccccchhhhhhcCCccccccccCcccccccccccc
Confidence            478999999999999998886421    1121  12345555666676665555444321          0112222322


Q ss_pred             C---CCC---cCHHHHHHHHHHhhhcCCCcEEEEEeccC-CccccccC----HHHHHHHHHHcCCEEEEecccccccccc
Q psy14299         74 E---RGQ---MICSFLEQTIQTSLAEKKIPLFVNATAGT-TVLGAFDP----LDEIATVCEKYDLWMHVDACWGGSLIFS  142 (448)
Q Consensus        74 ~---~g~---id~e~Le~~l~~~~~~~~~~~lVv~~~~~-t~tG~~~~----l~~I~~ia~~~g~~l~VD~A~~~~~~~~  142 (448)
                      .   ...   -+.+++++.+.+   .+..+.+|++.-.- ...|...|    +++|.++|++||+.+++|+.+.+.--..
T Consensus       179 ~~~~~~~~~~~~~~~~~~~~~~---~~~~iaavivEPi~~~~gg~~~~~~~fl~~lr~lc~~~gillI~DEV~tGfGRtG  255 (429)
T d1s0aa_         179 QSRMDGEWDERDMVGFARLMAA---HRHEIAAVIIEPIVQGAGGMRMYHPEWLKRIRKICDREGILLIADEIATGFGRTG  255 (429)
T ss_dssp             CSBC-CCCCGGGGHHHHHHHHH---HTTTEEEEEECSSEECTTTCEEBCTHHHHHHHHHHHHHTCEEEEECTTTTTTTTS
T ss_pred             ccccccccchhhhhhhhhhhhh---cCCccceeeecceeccCCCccCCCHHHHHHHHHHHHHcCcceehhhccccccccc
Confidence            1   112   245555555544   23345455554332 32344332    8999999999999999999887642211


Q ss_pred             cchhhhhcCCCCccEEEECCcccc-CCCCceEEEEEecc
Q psy14299        143 EKYSFVLKGINRANSVSWNPHKML-GAPLQCSILLIKEK  180 (448)
Q Consensus       143 ~~~~~~~~~~~~aD~~~~s~hK~l-~~P~g~G~l~vr~~  180 (448)
                      ..+.....++ ..|++++  -|.+ ++-...+.+..+++
T Consensus       256 ~~~~~~~~~v-~PDi~~~--gK~l~gG~~p~~av~~~~~  291 (429)
T d1s0aa_         256 KLFACEHAEI-APDILCL--GKALTGGTMTLSATLTTRE  291 (429)
T ss_dssp             SSSGGGGGTC-CCSEEEE--CGGGGTSSSCCEEEEECHH
T ss_pred             ccccccccee-ccccccc--ccccccccccccchhhHHH
Confidence            1111112233 3688887  4555 33244666667554

>d3tata_ c.67.1.1 (A:) Aromatic aminoacid aminotransferase, AroAT {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: AAT-like
domain: Aromatic aminoacid aminotransferase, AroAT
species: Escherichia coli [TaxId: 562]

Probab=99.01  E-value=2.4e-10  Score=113.12  Aligned_cols=135  Identities=13%  Similarity=0.046  Sum_probs=96.1

Q ss_pred             CCeEEEecCCCchHHHHHHHHhCCCCCcEEEEecCCC--CCcCHHHHHHHHHHhhhcCCCcEEEEEeccCCccccccC--
Q psy14299         39 PPLCMFTSEDSHYSMLKAAHWLGIGMDNVIRVKTNER--GQMICSFLEQTIQTSLAEKKIPLFVNATAGTTVLGAFDP--  114 (448)
Q Consensus        39 ~~~~Vl~~~~~H~s~~~~~~~~g~~~~~v~~v~~~~~--g~id~e~Le~~l~~~~~~~~~~~lVv~~~~~t~tG~~~~--  114 (448)
                      |++.|++++..+.......+..|.   +++.+|.+.+  +..|.+++.+.+..   ...+++++++..++|+||...+  
T Consensus       120 pgd~Vlv~~P~y~~y~~~~~~~G~---~~~~v~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~p~NPTG~~~s~~  193 (397)
T d3tata_         120 PESGVWVSDPTWENHVAIFAGAGF---EVSTYPWYDEATNGVRFNDLLATLKT---LPARSIVLLHPCCHNPTGADLTND  193 (397)
T ss_dssp             SSCCCEECSSCCTTHHHHHHTTTC---CCEECCCCCTTTSSCCHHHHHHHHTT---CCSSCCCEECSSSCSSSCCCCCHH
T ss_pred             CCCcceecccCccccHHHHHHcCC---EEEEEecchhhccccchHHHHHHhhh---cccccEEEEecCCCCCCCeeCCHH
Confidence            778899999999999999999998   7888888654  46788888777654   2346778999999999997755  


Q ss_pred             -HHHHHHHHHHcCCEEEEecccccccccccchhhh---hcCCCCccEEEECCccccCCCC-ceEEEEEec
Q psy14299        115 -LDEIATVCEKYDLWMHVDACWGGSLIFSEKYSFV---LKGINRANSVSWNPHKMLGAPL-QCSILLIKE  179 (448)
Q Consensus       115 -l~~I~~ia~~~g~~l~VD~A~~~~~~~~~~~~~~---~~~~~~aD~~~~s~hK~l~~P~-g~G~l~vr~  179 (448)
                       +++|.++|++|+++++.|.+|....+..+.....   ......-=++..++.|.++.|. -+|.+....
T Consensus       194 ~~~~l~~~a~~~~~~ii~De~Y~~l~~~~~~~~~~~~~~~~~~~~~i~~~s~SK~~~~~G~RiG~~~~~~  263 (397)
T d3tata_         194 QWDAVIEILKARELIPFLDIAYQGFGAGMEEDAYAIRAIASAGLPALVSNSFSKIFSLYGERVGGLSVMC  263 (397)
T ss_dssp             HHHHHHHHHHHTTCCCEECBSCTTSSSCHHHHHHHHHHHHTTTCCCEECBCCHHHHTBTTTCCBCCEEEC
T ss_pred             HHHHHHHHHhhcCeeEEeehhhhhhccCCcccchhhhhhhhcCCceEEEecCcccccccCccccccccch
Confidence             6788999999999999999998765422111110   1111111255678888776553 346655544

>d1n8pa_ c.67.1.3 (A:) Cystathionine gamma-lyase (CYS3) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: Cystathionine synthase-like
domain: Cystathionine gamma-lyase (CYS3)
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=98.99  E-value=2.1e-08  Score=98.51  Aligned_cols=144  Identities=13%  Similarity=0.029  Sum_probs=96.7

Q ss_pred             cEEEeCcHHHHHHHHHHHHHHhcCCcccccCCCCCCCeEEEecCCCchHHHHHHHHh-CCCCCcEEEEecCCCCCcCHHH
Q psy14299          4 KPFLLPGGSISNMYSICLARYRLDPDTKRKGLSHLPPLCMFTSEDSHYSMLKAAHWL-GIGMDNVIRVKTNERGQMICSF   82 (448)
Q Consensus         4 ~g~~t~ggT~an~~al~~a~~~~~~~~~~~G~~~~~~~~Vl~~~~~H~s~~~~~~~~-g~~~~~v~~v~~~~~g~id~e~   82 (448)
                      .++.+++|..|+ .++..+..              +++.|+++...+......+... ......+..+.      .+.++
T Consensus        72 ~a~~~sSGmaAi-~~~l~~l~--------------~gd~iv~~~~~yg~t~~~~~~~l~~~gi~~~~~~------~~~~~  130 (393)
T d1n8pa_          72 YGLAFSSGSATT-ATILQSLP--------------QGSHAVSIGDVYGGTHRYFTKVANAHGVETSFTN------DLLND  130 (393)
T ss_dssp             EEEEESCHHHHH-HHHHHTSC--------------SSCEEEEESSCCHHHHHHHHHTSTTTCSCCEEES------SHHHH
T ss_pred             eEEEecCchhHH-Hhhhhccc--------------CCCeeeeeeeecccchhhhhhhhhcccceeEEee------cchHH
Confidence            467788884444 34333322              4456777767666665555432 22122444443      25577


Q ss_pred             HHHHHHHhhhcCCCcEEEEEeccCCccccccCHHHHHHHHH----HcCCEEEEecccccccccccchhhhhcCCCCccEE
Q psy14299         83 LEQTIQTSLAEKKIPLFVNATAGTTVLGAFDPLDEIATVCE----KYDLWMHVDACWGGSLIFSEKYSFVLKGINRANSV  158 (448)
Q Consensus        83 Le~~l~~~~~~~~~~~lVv~~~~~t~tG~~~~l~~I~~ia~----~~g~~l~VD~A~~~~~~~~~~~~~~~~~~~~aD~~  158 (448)
                      +++++++      ++++|.+..++|++..+.||++|+++||    ++|++++||-+++.....-+ ..   .   ++|++
T Consensus       131 ~~~~i~~------~t~lv~~EspsNP~l~v~Di~~ia~~a~~~~~~~g~~lvVDnT~atP~~~~P-l~---~---GADiV  197 (393)
T d1n8pa_         131 LPQLIKE------NTKLVWIETPTNPTLKVTDIQKVADLIKKHAAGQDVILVVDNTFLSPYISNP-LN---F---GADIV  197 (393)
T ss_dssp             HHHHSCS------SEEEEEECSSCTTTCCCCCHHHHHHHHHHHTTTTTCEEEEECTTTHHHHCCG-GG---G---TCSEE
T ss_pred             HHHHhhh------hcceeEecCcchhhhhccchhhhhhhhhhhcccCCceEEEecCccCcccCCc-hh---h---CCCEE
Confidence            8887754      6899999999999999999999999999    67899999999876554222 11   1   48999


Q ss_pred             EECCccccCCCCc--eEEEEEeccc
Q psy14299        159 SWNPHKMLGAPLQ--CSILLIKEKG  181 (448)
Q Consensus       159 ~~s~hK~l~~P~g--~G~l~vr~~~  181 (448)
                      +.|..|++++...  .|++..+++.
T Consensus       198 vhS~TKyi~GhsDv~~G~v~~~~~~  222 (393)
T d1n8pa_         198 VHSATKYINGHSDVVLGVLATNNKP  222 (393)
T ss_dssp             EEETTTTTTCSSCCCCEEEEESCHH
T ss_pred             EEccccccCCCCccccceeeecchh
Confidence            9999999988643  3444444443

>d2ctza1 c.67.1.3 (A:1-421) O-acetyl-L-homoserine sulfhydrylase {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: Cystathionine synthase-like
domain: O-acetyl-L-homoserine sulfhydrylase
species: Thermus thermophilus [TaxId: 274]

Probab=98.90  E-value=1.2e-07  Score=93.51  Aligned_cols=144  Identities=10%  Similarity=-0.000  Sum_probs=101.3

Q ss_pred             cEEEeCcHHHHHHHHHHHHHHhcCCcccccCCCCCCCeEEEecCCCchHHHHHHH----HhCCCCCcEEEEecCCCCCcC
Q psy14299          4 KPFLLPGGSISNMYSICLARYRLDPDTKRKGLSHLPPLCMFTSEDSHYSMLKAAH----WLGIGMDNVIRVKTNERGQMI   79 (448)
Q Consensus         4 ~g~~t~ggT~an~~al~~a~~~~~~~~~~~G~~~~~~~~Vl~~~~~H~s~~~~~~----~~g~~~~~v~~v~~~~~g~id   79 (448)
                      .++.+++|..|+..++....+              +++.|+++...+......++    ..|+   .+..+..+    -+
T Consensus        75 ~a~~~~SGmaAi~~~~~~l~~--------------~gd~il~~~~~Yg~t~~l~~~~~~~~gi---~~~~~d~~----~~  133 (421)
T d2ctza1          75 AALATASGHAAQFLALTTLAQ--------------AGDNIVSTPNLYGGTFNQFKVTLKRLGI---EVRFTSRE----ER  133 (421)
T ss_dssp             EEEEESSHHHHHHHHHHHHCC--------------TTCEEEECSCCCHHHHHHHHTHHHHTTC---EEEECCTT----CC
T ss_pred             eEEEecChHHHHHHHHHhhcc--------------cccceeecCCcCCchhHHHHHHHhhccc---cceecccc----cC
Confidence            467888888777666655443              67788889888866555443    4455   55555432    13


Q ss_pred             HHHHHHHHHHhhhcCCCcEEEEEeccCCccccccCHHHHHHHHHHcCCEEEEecccccccccccchhhhhcCCCCccEEE
Q psy14299         80 CSFLEQTIQTSLAEKKIPLFVNATAGTTVLGAFDPLDEIATVCEKYDLWMHVDACWGGSLIFSEKYSFVLKGINRANSVS  159 (448)
Q Consensus        80 ~e~Le~~l~~~~~~~~~~~lVv~~~~~t~tG~~~~l~~I~~ia~~~g~~l~VD~A~~~~~~~~~~~~~~~~~~~~aD~~~  159 (448)
                      .+..++.+++      ++++|.+..++|++..+.||++|+++||++|++++||.+++...+......   .   ++|+++
T Consensus       134 ~~~~~~~~~~------~t~li~~EtpsNP~l~v~Di~~i~~iA~~~g~~~vvDnT~a~tP~~~~Pl~---~---GaDiVv  201 (421)
T d2ctza1         134 PEEFLALTDE------KTRAWWVESIGNPALNIPDLEALAQAAREKGVALIVDNTFGMGGYLLRPLA---W---GAALVT  201 (421)
T ss_dssp             HHHHHHHCCT------TEEEEEEESSCTTTCCCCCHHHHHHHHHHHTCEEEEECGGGGGGTSCCGGG---G---TCSEEE
T ss_pred             cchhccccCC------CceEEEEcCCCcceeEecchHHHHHHHHhcCCceEecccccccceeccccc---c---CCcEEE
Confidence            3444554533      689999999999999999999999999999999999999874332222111   1   589999


Q ss_pred             ECCccccCCCCc--eEEEEEecc
Q psy14299        160 WNPHKMLGAPLQ--CSILLIKEK  180 (448)
Q Consensus       160 ~s~hK~l~~P~g--~G~l~vr~~  180 (448)
                      .|..|.+++...  .|++..+++
T Consensus       202 hS~TKyl~GHsD~l~G~vv~~~~  224 (421)
T d2ctza1         202 HSLTKWVGGHGAVIAGAIVDGGN  224 (421)
T ss_dssp             EETTTTTTCSSCCCCEEEEECSC
T ss_pred             EechhhccCCCCeEEEEEEcCCc
Confidence            999999988643  445554443