Psyllid ID: psy14307

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-------540-------550-------560-------570-------580-------590-------600-------610-------620-------630-------640-------650-------660-------670-------680-------690-------700-------710-------720-------730-------740-------750-------760-------770-------780-------790-------800-------810-------820-------830-------840-------850-------860-------870-------880-------890-------900-------910-------920-------930-------940-------950-------960-------970-------980-------990------1000------1010------1020------1030------1040------1050------1060------1070------1080------1090------1100------1110------1120------1130------1140------1150------1160------1170------1180------1190------1200------1210------1220------1230-----
Protein Sequence
MLLRTTVFEYLVLVRQQFLKPFLLMKLDLEKVRPVQTYVAYGTDITVPTNIYNVQCFSSTTVEHSRRPKNTQLHQDSSHGNILETKPPNLLQQNKSHENIPENSETPTPNLDGTGQLNDNNKSVIKWFLENVECLLDYLVQQKETANVNSADLVNNRENVVKPVERKDGKETTEKETGKIAGNGTTKEETEGTFAKLADSETNPTEVAERTAPESSKRTDSKEDIENRVDNNDGTIATDEALKAIESQRRVKRRAAKTRDKIKENIDPELGNLSDLNEDLKKPGEPEVQTPIVPEPTKQELPEVPETTKPQLPEVPEPTKSQLPEVPEPTKPQLPEVLEPTTLQLPEDPEPTKPQLPEDPEPTKPQLPEVPEPTKPQLPEVLEPTKLQLPEDPEPTKPQLPEDPETTKPQLPEVPEPTKLQLPEVPEPTKPELPEVPELTKTQLPEVPEPTKPQILDKKEPVLLDKKEPVLLDKKEPVLPPKPEPEILLPPKPEPELLLPPKPEPELLLPPKLEPKLLLPPKSEPELLLPPKPEPELLLPPKPKPELLLPPKPEPEKLLLPPKPKPKLLLPPKPESELLLPPKPEPELIIPPKPEPEILIPPKPEPELLLPPKPEPEILLPPKPEPELLLPPKPEPEILLPPKPEPELLLPPKPESELLLPLKPEPEILLPPKPEPELLLPPKPEPELLLPPKPETITTTKTLLLDKKEPVLLDKKEPVLLDKKEPVLLDKKEPVLLDKKEPVLLDEKEPVLLDKKEPVLLDKKERVLLDKKEPVLLDKKEPVLLDKKEHVLLDKKETVLLDKKEPVLLDKKEPILLDKKEPVLLDKKEPVLLDKKSPVLLDKKGPVILDKKEPVLLDKKEPVLLDKKEPVLLDKKAPVLLDKKEPVLLDKKEPVLLDKKEPVLLDKKEPILFEKAALKVQTKPEVFKVPPKDKDEDEPIFFNEPKSPPEKPHHSPIPPPPPVLNPPNSELVYKDKYTGVGGYFGAVPEIGQNYYFHQNQSQNYYYHQNLSQNYYYHQNLSLKYYCRRNLSQNYYCHQNQSPNNYYYHLNLSQNYYFHQNQSQNYYYHQNLSQNYYYHQNLSLKYYCRRNLSQNYYCHQNQSQNYYYHQNQSQNYYYHQNQSQKYYYHQNLSQNYYYHQNLSQNYYCHQNQSQNYYYHQNQSQKYYYHQNLSQNCYYHQNRSQNYYYHQNLSQNYYYHQNQSQKNYYYHLNLSQNYYYHQNLSQNYYYHQNSFTS
Secondary Structure (PSIPRED)
cccHHHHHHHHHHHHHHHHHHHHHHHcccccccccEEEEEEcccccccccEEEEEEEccccEEcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccEEcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Secondary Structure Prediction (SSPRO)
ccHHHHHHHHHHHHHHHHHHHHHHHHccHHcccccEEEEEEccccEccccEEEcccccccEcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccEEEcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccEEEcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Coil and Loop (DISEMBL)
MLLRTTVFEYLVLVRQQFLKPfllmkldlekvrpvqtyvaygtditvptniynvqcfssttvehsrrpkntqlhqdsshgniletkppnllqqnkshenipensetptpnldgtgqlndnNKSVIKWFLENVECLLDYLVQQKEtanvnsadlvnnrenvvkpverkdgketteketgkiagngttkeetegtfakladsetnptevaertapesskrtdskedienrvdnndgtiaTDEALKAIESQRRVKRRAAKTRDKikenidpelgnlsdlnedlkkpgepevqtpivpeptkqelpevpettkpqlpevpeptksqlpevpeptkpqlpevlepttlqlpedpeptkpqlpedpeptkpqlpevpeptkpqlpevleptklqlpedpeptkpqlpedpettkpqlpevpeptklqlpevpeptkpelpevpeltktqlpevpeptkpqildkkepvlldkkepvlldkkepvlppkpepeillppkpepelllppkpepelllppklepklllppksepelllppkpepelllppkpkpelllppkpepeklllppkpkpklllppkpeselllppkpepeliippkpepeilippkpepelllppkpepeillppkpepelllppkpepeillppkpepelllppkpeselllplkpepeillppkpepelllppkpepelllppkpetitTTKTllldkkepvlldkkepvlldkkepvlldkkepvlldkkepvlldekepvlldkkepvlldkkervlldkkepvlldkkepvlldkkehvlldkketvlldkkepvlldkkepilldkkepvlldkkepvlldkkspvlldkkgpvildkkepvlldkkepvlldkkepvlldkkapvlldkkepvlldkkepvlldkkepvlldkkepiLFEKAALkvqtkpevfkvppkdkdedepiffnepksppekphhspipppppvlnppnselvykdkytgvggyfgavpeigqnyyfhqnqsqnyyyhqNLSQNYYYHQNLSLKYYCRRNlsqnyychqnqspnnyyyHLNLSQNYYFHQNQSQNYYYHQNLSQNYYYHQNLSLKYYCRRNlsqnyychqnqsqnyyyhqnqsqnyyyhqnqsqkyYYHQNLSQNYYYHqnlsqnyychqnqsqnyyyhqnqsqkyyyhqnlsqncyyhqnrsqnyyYHQNLSQNYYYHQNQSQKNYYYHLNLSQNYYYHQNLsqnyyyhqnsfts
Flexible Loop (DISEMBL)
MLLRTTVFEYLVLVRQQFLKPFLLMKLDLEKVRPVQTYVAYgtditvptniYNVQCFSsttvehsrrpKNTQLHQDSSHGNILETKPPNLLQQNKSHENIPENSETPTPNLDGTGQLNDNNKSVIKWFLENVECLLDYLVQQKEtanvnsadlvnnrenvvkpverkdgketteketgkiagngttkeetegtfakladsetnptevaertapesskrtdskedienrvdnndgtiatdealkaiesqrrvkrraaktrdkikenidpelgnlsdlnedlkKPGEpevqtpivpeptkqelpevpettkpqlpevpeptksqlpevpeptkpqlPEVLEPTTLQLPEDPEPTKPQLPEDPEPTKPQLPEVPEPTKPQLPEVLEPTKLQLPEDPEPTkpqlpedpettkpqlpevpeptklqlpevpeptkpelpevpeltktqlpevpeptkpqildkkepvlldkkepvlldkkepvlppkpepeillppkpEPELLLPPKPEPELLLPPKLEPKLLLPPKSEPELLLPPKPEPELLLPPKPKPELLLPPKPEPEKLLLPPKPKPKLLLPPKPESELLLPPKPEPELIIPPKPEPEILIPPKPEPELLLPPKPEPEILLPPKPEPELLLPPKPEPEILLPPKPEPELLLPPKPESELLLPLKPEPEILLPPKPEPELLLPPKpepelllppkpeTITTtktllldkkepvlldkkepvlldkkepvlldkkepvlldkkepvlldekepvlldkkepvlldkkervlldkkepvlldkkepvlldkkehvlldkketvlldkkepvlldkkepilldkkepvlldkkepvlldkkspvlldkkgpvildkkepvlldkkepvlldkkepvlldkkapvlldkkepvlldkkepvlldkkepvlldkkepilfekaalkvqtkpevfkvppkdkdedePIFFNEPKSPPEKPHHSPIPPPPPVLNPPNSELVYKDKYTGVGGYFGAVPEIGQNYYFHQNQSQNYYYHQNLSQNYYYHQNLSLKYYCRRNLSQNYYCHQNQSPNNYYYHLNLSQNYYFHQNQSQNYYYHQNLSQNYYYHQNLSLKYYCRRNLSQNYYCHQNQSQNYYYHQNQSQNYYYHQNQSQKYYYHQNLSQNYYYHQNLSQNYYCHQNQSQNYYYHQNQSQKYYYHQNLSQNCYYHQNRSQNYYYHQNLSQNYYYHQNQSQKNYYYHLNLSQNYYYHQNLSQNYYYHQNSFTS
Low Complexity Region (SEG)
MLLRTTVFEYLVLVRQQFLKPFLLMKLDLEKVRPVQTYVAYGTDITVPTNIYNVQCFSSTTVEHSRRPKNTQLHQDSSHGNILETKPPNLLQQNKSHENIPENSETPTPNLDGTGQLNDNNKSVIKWFLENVECLLDYLVQQKETANVNSADLVNNRENVVKPVERKDGKETTEKETGKIAgngttkeetegtFAKLADSETNPTEVAERTAPESSKRTDSKEDIENRVDNNDGTIATDEALKAIESQRRVKRRAAKTRDKIKENIDPELGNLSDLNEDLKKPGEPEVQTPIVPEPTKQELPEVPETTKPQLPEVPEPTKSQLPEVPEPTKPQLPEVLEPTTLQLPEDPEPTKPQLPEDPEPTKPQLPEVPEPTKPQLPEVLEPTKLQLPEDPEPTKPQLPEDPETTKPQLPEVPEPTKLQLPEVPEPTKPELPEVPELTKTQLPEVPEPTKPQILDKKEPVLLDKKEPVLLDkkepvlppkpepeillppkpepelllppkpepelllppklepklllppksepelllppkpepelllppkpkpelllppkpepeklllppkpkpklllppkpeselllppkpepeliippkpepeilippkpepelllppkpepeillppkpepelllppkpepeillppkpepelllppkpeselllplkpepeillppkpepelllppkpepelllppkpetitttktllldkkEPVLLDKKEPVLLDKKEPVLLDKKEPVLLDKKEPVLLDEKEPVLLDKKEPVLLDKKERVLLDKKEPVLLDKKEPVLLDKKEHVLLDKKETVLLDKKEPVLLDKKEPILLDKKEPVLLDKKEPVLLDKKSPVLLDKKGPVILDKKEPVLLDKKEPVLLDKKEPVLLDKKAPVLLDKKEPVLLDKKEPVLLDKKEPVLLDKKEPILFEKAALKVQTKPEVFKVPPKDKDEDEPIFFNEpksppekphhspipppppvlnppnselvYKDKYTGVGGYFGAVPEIGqnyyfhqnqsqnyyyhqnlsqnyyyhqnlSLKYYCRRNLSQNYYCHQNQSPNNYYYHLNLsqnyyfhqnqsqnyyyhqnlsqnyyyhqnLSLKYYCRRNLsqnyychqnqsqnyyyhqnqsqnyyyhqnqsqkyyyhqnLSQNYYYHQNLsqnyychqnqsqnyyyhqnqsqkyyyhqnLSQNCYYHQNRsqnyyyhqnlsqnyyyhqnqsqknyyyhLNLSQNYYYHQNLSQNYYYHQNSFTS
Disordered region (IsUnstruct)
**LRTTVFEYLVLVRQQFLKPFLLMKLDLEKVRPVQTYVAYGTDITVPTNIYNVQCFSS***************************************************************SVIKWFLENVECLLDYLVQQKETA****************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************LLL*****VLL******L*******L***********************LL*****VLLDKKERVLLDKKEPVLLDKKEPVLLDKKEHVLLDKKETVLLDKKEPVLLDKKEPILLDKKEPVLLDK**PVLLDK*SPVLLDKKGPVILDKKEPVLLDKKEPVLLDKKEPVLLDKKAPVLLDKKEPVLLDKKEPVLLDKKEPVLLDKKEPILFEKAALKV**************************************************LVYKDKYTGVGGYFGAVPEIGQNYYFHQNQSQNYYYHQNLSQNYYYHQNLSLKYYCRRNLSQNYYCHQNQSPNNYYYHLNLSQNYYFHQNQSQNYYYHQNLSQNYYYHQNLSLKYYCRRNLSQNYYCHQNQSQNYYYHQNQSQNYYYHQNQSQKYYYHQNLSQNYYYHQNLSQNYYCHQNQSQNYYYHQNQSQKYYYHQNLSQNCYYHQNRSQNYYYHQNLSQNYYYHQNQSQKNYYYHLNLSQNYYYHQNLSQNYYYH******
Disordered Region (DISOPRED)
**LRTTVFEYLVLVRQQFLKPFLLMKLDLEKVRPVQTYVAYGTDITVPTNIYNVQCFSSTT*********************************************************************NVEC**************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************YY**N**************
Disordered Region (DISEMBL)
MLLRTTVFEYLVLVRQQFLKPFLLMKLDLEKVRPVQTYVAYGTDITVPTNIYNVQCFSS********************GNILETKPPNLLQQNKSHENIPENSETPTPNLDGTGQLNDNNKSVIKWFLENVECLLDYLVQQKETANVNSADLVNNRENVVKPVERKDGKETTEKETGKIAGNGTTKEETEGTFAKLA*************************DIENRVDNNDGTIATDEALKAIES***********RDKIKENIDPELGNLSDLNEDLKKPGEPEVQTPIVPEPTKQELPEVPETTKPQLPEVPEPTKSQLPEVPEPTKPQLPEVLEPTTLQLPE************************EPTKPQLPEVLEPTKLQLP**********************EVPEPTKLQLPEVPEPTKPELPEVPELTKTQLPEVPEPTKPQILDKKEPVLLDKKEPVLLDKKEPVLPPKPEPEILLPPKPEPELLLPPKPEPELLLPPKLEPKLLLPPKSEPELLLPPKPEPELLLPPKPKPELLLPPKPEPEKLLLPPKPKPKLLLPPKPESELLLPPKPEPELIIPPKPEPEILIPPKPEPELLLPPKPEPEILLPPKPEPELLLPPKPEPEILLPPKPEPELLLPPKPESELLLPLKPEPEILLPPKPEPELLLPPKPEPELLLPPKPETITTTKTLLLDKKEPVLLDKKEPVLLDKKEPVLLDKKEPVLLDKKEPVLLDEKEPVLLDKKEPVLLDKKERVLLDKKEPVLLDKKEPVLLDKKEHVLLDKKETVLLDKKEPVLLDKKEPILLDKKEPVLLDKKEPVLLDKKSPVLLDKKGPVILDKKEPVLLDKKEPVLLDKKEPVLLDKKAPVLLDKKEPVLLDKKEPVLLDKKEPVLLDKKEPILFEKAALKVQTKPEVFKVPPKDKDEDEPIFFNEPK**********IPPPPPVLNPPNSELVYKDKYTGVGGYFGAVPEIGQNYYFHQNQSQNYYYHQNLSQNYYYHQNLSLKYYCRRNLSQNYYCHQNQSPNNYYYHLNLSQNYYFHQNQSQNYYYHQNLSQNYYYHQNLSLKYYCRRNLSQNYYCHQNQSQNYYYHQNQSQNYYYHQNQSQKYYYHQNLSQNYYYHQNLSQNYYCHQNQSQNYYYHQNQSQKYYYHQNLSQNCYYHQNRSQNYYYHQNLSQNYYYHQNQSQKNYYYHLNLSQNYYYHQNLSQNYYYHQNSFTS
Disordered Region (DISPRO)
MLLRTTVFEYLVLVRQQFLKPFLLMKLDLEKVRPVQTYVAYGTDITVPTNIYNVQCFS*****************************************************************VIKWFLENVECLLDYLVQ**************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
oooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
SSSSSSSSSSSSSSSSSSSSSSSSSSSiiiihhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MLLRTTVFEYLVLVRQQFLKPFLLMKLDLEKVRPVQTYVAYGTDITVPTNIYNVQCFSSTTVEHSRRPKNTQLHQDSSHGNILETKPPNLLQQNKSHENIPENSETPTPNLDGTGQLNDNNKSVIKWFLENVECLLDYLVQQKETANVNSADLVNNRENVVKPVERKDGKETTEKETGKIAGNGTTKEETEGTFAKLADSETNPTEVAERTAPESSKRTDSKEDIENRVDNNDGTIATDEALKAIESQRRVKRRAAKTRDKIKENIDPELGNLSDLNEDLKKPGEPEVQTPIVPEPTKQELPEVPETTKPQLPEVPEPTKSQLPEVPEPTKPQLPEVLEPTTLQLPEDPEPTKPQLPEDPEPTKPQLPEVPEPTKPQLPEVLEPTKLQLPEDPEPTKPQLPEDPETTKPQLPEVPEPTKLQLPEVPEPTKPELPEVPELTKTQLPEVPEPTKPQILDKKEPVLLDKKEPVLLDKKEPVLPPKPEPEILLPPKPEPELLLPPKPEPELLLPPKLEPKLLLPPKSEPELLLPPKPEPELLLPPKPKPELLLPPKPEPEKLLLPPKPKPKLLLPPKPESELLLPPKPEPELIIPPKPEPEILIPPKPEPELLLPPKPEPEILLPPKPEPELLLPPKPEPEILLPPKPEPELLLPPKPESELLLPLKPEPEILLPPKPEPELLLPPKPEPELLLPPKPETITTTKTLLLDKKEPVLLDKKEPVLLDKKEPVLLDKKEPVLLDKKEPVLLDEKEPVLLDKKEPVLLDKKERVLLDKKEPVLLDKKEPVLLDKKEHVLLDKKETVLLDKKEPVLLDKKEPILLDKKEPVLLDKKEPVLLDKKSPVLLDKKGPVILDKKEPVLLDKKEPVLLDKKEPVLLDKKAPVLLDKKEPVLLDKKEPVLLDKKEPVLLDKKEPILFEKAALKVQTKPEVFKVPPKDKDEDEPIFFNEPKSPPEKPHHSPIPPPPPVLNPPNSELVYKDKYTGVGGYFGAVPEIGQNYYFHQNQSQNYYYHQNLSQNYYYHQNLSLKYYCRRNLSQNYYCHQNQSPNNYYYHLNLSQNYYFHQNQSQNYYYHQNLSQNYYYHQNLSLKYYCRRNLSQNYYCHQNQSQNYYYHQNQSQNYYYHQNQSQKYYYHQNLSQNYYYHQNLSQNYYCHQNQSQNYYYHQNQSQKYYYHQNLSQNCYYHQNRSQNYYYHQNLSQNYYYHQNQSQKNYYYHLNLSQNYYYHQNLSQNYYYHQNSFTS
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	1235	2.2.26 [Sep-21-2011]
Q7Z2K8	1008	G protein-regulated induc	yes	N/A	0.188	0.231	0.275	6e-11
Q96JE9	813	Microtubule-associated pr	no	N/A	0.129	0.196	0.394	2e-10
O42854	1611	SH3 domain-containing pro	yes	N/A	0.133	0.102	0.347	2e-08
Q63425	1383	Periaxin OS=Rattus norveg	yes	N/A	0.212	0.189	0.354	2e-07
Q9JM99	1054	Proteoglycan 4 OS=Mus mus	no	N/A	0.100	0.117	0.461	4e-07
Q9QYX7	5068	Protein piccolo OS=Mus mu	no	N/A	0.076	0.018	0.365	6e-07
Q9BXM0	1461	Periaxin OS=Homo sapiens	no	N/A	0.221	0.186	0.351	4e-05
Q6ZQX7	453	Uncharacterized protein C	no	N/A	0.150	0.410	0.336	0.0001
O55103	1391	Periaxin OS=Mus musculus	yes	N/A	0.183	0.163	0.327	0.0001
Q9D9R9	1790	Protein FAM186A OS=Mus mu	no	N/A	0.172	0.118	0.296	0.0001

>sp|Q7Z2K8|GRIN1_HUMAN G protein-regulated inducer of neurite outgrowth 1 OS=Homo sapiens GN=GPRIN1 PE=2 SV=2

 Score = 70.9 bits (172), Expect = 6e-11,   Method: Compositional matrix adjust.
 Identities = 65/236 (27%), Positives = 106/236 (44%)

Query: 676 PELLLPPKPEPELLLPPKPETITTTKTLLLDKKEPVLLDKKEPVLLDKKEPVLLDKKEPV 735
           PE     KPEP   +  +P++      + L+K +     + +   + K++P    K +P+
Sbjct: 121 PEATTSGKPEPVSSVKTEPKSSDDRNPMFLEKMDFKSSKQADSTSIGKEDPGSSRKADPM 180

Query: 736 LLDKKEPVLLDEKEPVLLDKKEPVLLDKKERVLLDKKEPVLLDKKEPVLLDKKEHVLLDK 795
              K EP +L + +PV   + +P+ + K++   L K +P+   K   V   K++   L K
Sbjct: 181 FTGKAEPEILGKGDPVAPGRMDPMTVRKEDLGSLGKVDPLCSSKTYTVSPRKEDPGSLRK 240

Query: 796 KETVLLDKKEPVLLDKKEPILLDKKEPVLLDKKEPVLLDKKSPVLLDKKGPVILDKKEPV 855
            + V  DK +PV   K+EP    K+ PV  +K  P   +K   VL  K+ P    K +P+
Sbjct: 241 VDPVSSDKVDPVFPRKEEPRYSGKEHPVSSEKVAPTSAEKVDLVLSGKRDPGPSGKADPM 300

Query: 856 LLDKKEPVLLDKKEPVLLDKKAPVLLDKKEPVLLDKKEPVLLDKKEPVLLDKKEPI 911
            L+  +     K EP LL K  P    K  PV      P  L + +P  L   +P 
Sbjct: 301 PLESMDSASTGKTEPGLLGKLIPGSSGKNGPVSSGTGAPGSLGRLDPTCLGMADPA 356

May be involved in neurite outgrowth.
Homo sapiens (taxid: 9606)

>sp|Q96JE9|MAP6_HUMAN Microtubule-associated protein 6 OS=Homo sapiens GN=MAP6 PE=1 SV=2

 Score = 69.3 bits (168), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 71/180 (39%), Positives = 84/180 (46%)

Query: 275 DLNEDLKKPGEPEVQTPIVPEPTKQELPEVPETTKPQLPEVPEPTKSQLPEVPEPTKPQL 334
           D ++    PG  + Q P+V EP K++   VP   K   P +P P K Q   VPEP K + 
Sbjct: 460 DKDQGSVVPGLLKGQGPMVQEPLKKQGSVVPGPPKDLGPMIPLPVKDQDHTVPEPLKNES 519

Query: 335 PEVLEPTTLQLPEDPEPTKPQLPEDPEPTKPQLPEVPEPTKPQLPEVLEPTKLQLPEDPE 394
           P +  P   Q P  P P K Q P  P   K Q   VPE  K Q P + EP K Q P  P 
Sbjct: 520 PVISAPVKDQGPSVPVPPKNQSPMVPAKVKDQGSVVPESLKDQGPRIPEPVKNQAPMVPA 579

Query: 395 PTKPQLPEDPETTKPQLPEVPEPTKLQLPEVPEPTKPELPEVPELTKTQLPEVPEPTKPQ 454
           P K + P    + K Q P V  P K Q P VP P K E P VP   K + P V  P K Q
Sbjct: 580 PVKDEGPMVSASVKDQGPMVSAPVKDQGPIVPAPVKGEGPIVPAPVKDEGPMVSAPIKDQ 639

Involved in microtubule stabilization in many cell types, including neuronal cells. Specifically has microtubule cold stabilizing activity.

Homo sapiens (taxid: 9606)

>sp|O42854|YFHH_SCHPO SH3 domain-containing protein C23A1.17 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=SPAC23A1.17 PE=1 SV=1

 Score = 62.8 bits (151), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 65/187 (34%), Positives = 83/187 (44%), Gaps = 22/187 (11%)

Query: 523  SEPELLLPPKPEPELLLPPKPKPELLLPPKPEPEKLLLPPKPKPKLLLPPKPESELL--- 579
            + P   +PP P+     PP P P    PP P P     PP P P    PP P+S      
Sbjct: 1005 AAPLARVPPVPKLSSKAPPVPLPSADAPPIPVPS--TAPPVPIP-TSTPPVPKSSSGAPS 1061

Query: 580  -----------LPPKPEPELIIPPKPEPEILIPPKPEPELLLPPKPEPEILLPPKPEPEL 628
                       +P  P P    PP P P   IPP P+P +  PP P+P + +PP P P  
Sbjct: 1062 APPPVPAPSSEIPSIPAPSGA-PPVPAPS-GIPPVPKPSVAAPPVPKPSVAVPPVPAPSG 1119

Query: 629  LLPPKPEPEILLPPKPEPELLLPPKPESELLLPLKPEPEILLPPKPEPELLLPPKPEPEL 688
              PP P+P +  PP P P    PP P+  +  P  P P    PP P+P +  PP P P  
Sbjct: 1120 A-PPVPKPSVAAPPVPVPSGA-PPVPKPSVAAPPVPAPS-GAPPVPKPSVAAPPVPAPSS 1176

Query: 689  LLPPKPE 695
             +PP P+
Sbjct: 1177 GIPPVPK 1183

Schizosaccharomyces pombe (strain 972 / ATCC 24843) (taxid: 284812)

>sp|Q63425|PRAX_RAT Periaxin OS=Rattus norvegicus GN=Prx PE=1 SV=2

 Score = 59.7 bits (143), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 116/327 (35%), Positives = 169/327 (51%), Gaps = 65/327 (19%)

Query: 272 NLSDLNEDLKKPGEPEVQTPIVPEPTKQELPEVPETTKP--QLPEV--PEPTKSQLPEVP 327
            +S    ++K P  PEV+ P VPE    +LP+ PE   P  QLPEV  P+ +  +LP++P
Sbjct: 427 GISVAGPEVKAPKGPEVKLPKVPE---IKLPKAPEAAIPDVQLPEVQLPKMSDMKLPKIP 483

Query: 328 EPTKP--QLPEVLEPTTLQLPEDPEPTKPQLPEDPEPTKPQLPEVPEPTKP--QLPEVLE 383
           E   P   LPEV      +LP+ PE   P++         +LP++PE   P   LP++  
Sbjct: 484 EMAVPDVHLPEV------KLPKVPEMKVPEM---------KLPKIPEMAVPDVHLPDI-- 526

Query: 384 PTKLQLPEDPEPTKP--QLPEDPETTKP-------QLPEVPEPT--KLQLPEVPEPTKPE 432
               QLP+ PE   P  +LP+ PE   P       QLP+VPE     ++LP+VPE   P+
Sbjct: 527 ----QLPKVPEMKLPDMKLPKVPEMAVPDVHLPDIQLPKVPEMKLPDMKLPKVPEMAVPD 582

Query: 433 --LPEV--PELTKTQLPEVPEPTKPQILDKKEPVLLDKKEPVLLDKKEPVLPPKPEPEIL 488
             +PEV  P++++ +LP++P+   P   D + P L   + P + + K P +P    P++ 
Sbjct: 583 VRIPEVQLPKVSEVKLPKIPDMAVP---DVRLPEL---QLPKMSEVKLPKIPDMAVPDVR 636

Query: 489 LP----PKPEPELLLPPKPE---PELLLPPKLEPKLLLPPKSEPELLLPPKPEPELLLPP 541
           LP    PK   EL LP  PE   P++ LP    PK+  P    PE+ LP  PE  + +P 
Sbjct: 637 LPEVQLPKVS-ELKLPKVPEMTMPDIRLPEVQLPKV--PDIKLPEIKLPKVPE--MAVPD 691

Query: 542 KPKPELLLPPKPEPEKLLLPPKPKPKL 568
            P PEL LP  P+   + LP  P+ KL
Sbjct: 692 VPLPELQLPKVPQVPDVHLPKVPEMKL 718

Seems to be required for maintenance of peripheral nerve myelin sheath. May have a role in axon-glial interactions, possibly by interacting with the cytoplasmic domains of integral membrane proteins such as myelin-associated glycoprotein in the periaxonal regions of the Schwann cell plasma membrane. May have a role in the early phases of myelin deposition.

Rattus norvegicus (taxid: 10116)

>sp|Q9JM99|PRG4_MOUSE Proteoglycan 4 OS=Mus musculus GN=Prg4 PE=1 SV=2

 Score = 58.2 bits (139), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 71/154 (46%), Positives = 87/154 (56%), Gaps = 30/154 (19%)

Query: 283 PGEPEVQTPIVPEPT--KQELPEVPETTKPQLPEVPEPTKSQLPEVPEPTKPQLPEVLEP 340
           P EPE  TP  PEPT  K+  P  P+  +P  P+ PEPT    P+ PEPT P+ P   EP
Sbjct: 482 PKEPEPTTPKEPEPTTPKEPEPTTPKEPEPTTPKEPEPT---TPKEPEPTTPKEP---EP 535

Query: 341 TTLQLPEDPEPTKPQLPEDPEPTKPQLPEVPEPTKPQLPEVLEPTKLQLPEDPEPTKPQL 400
           TT   P++PEPT P+ PE      P  P+ P PT P+ P   EPT    P++PEPT P+ 
Sbjct: 536 TT---PKEPEPTTPKKPE------PTTPKEPVPTTPKEP---EPT---TPKEPEPTTPKE 580

Query: 401 PEDPETTK---PQLPEVPEPTKLQLPEVPEPTKP 431
           PE P T K   P  P+ PEPT    P+ PEPT P
Sbjct: 581 PE-PTTRKEPEPTTPKEPEPT---TPKEPEPTTP 610

Plays a role in boundary lubrication within articulating joints. Prevents protein deposition onto cartilage from synovial fluid by controlling adhesion-dependent synovial growth and inhibiting the adhesion of synovial cells to the cartilage surface.

Mus musculus (taxid: 10090)

>sp|Q9QYX7|PCLO_MOUSE Protein piccolo OS=Mus musculus GN=Pclo PE=1 SV=4

 Score = 57.8 bits (138), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 46/126 (36%), Positives = 71/126 (56%)

Query: 562 PKPKPKLLLPPKPESELLLPPKPEPELIIPPKPEPEILIPPKPEPELLLPPKPEPEILLP 621
           P+   K+  P K  ++L  P K   +   P KP P+  IP KP+P+  +  KP+P+   P
Sbjct: 362 PQTAAKVPGPTKTPAQLSGPGKTPAQQPGPTKPSPQQPIPAKPQPQQPVATKPQPQQPAP 421

Query: 622 PKPEPELLLPPKPEPEILLPPKPEPELLLPPKPESELLLPLKPEPEILLPPKPEPELLLP 681
            KP+P+   P KP+P+   P KP+P+   P KP+ +   P KP+P+   P KP+P+   P
Sbjct: 422 AKPQPQHPTPAKPQPQHPTPAKPQPQQPTPAKPQPQQPTPAKPQPQQPTPAKPQPQHPTP 481

Query: 682 PKPEPE 687
            KP+P+
Sbjct: 482 AKPQPQ 487

May act as a scaffolding protein involved in the organization of synaptic active zones and in synaptic vesicle trafficking.

Mus musculus (taxid: 10090)

>sp|Q9BXM0|PRAX_HUMAN Periaxin OS=Homo sapiens GN=PRX PE=1 SV=2

 Score = 51.6 bits (122), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 121/344 (35%), Positives = 179/344 (52%), Gaps = 71/344 (20%)

Query: 286 PEVQTPIV--PEPTKQELPEVPETTKP--QLPEV--PEPTKSQLPEVPEPTKP--QLPEV 337
           PEV+ P V  P+ ++ +LP+VPE   P  +LPEV  P+ ++ +LP+VPE   P  +LPEV
Sbjct: 461 PEVRLPEVELPKVSEMKLPKVPEMAVPEVRLPEVELPKVSEMKLPKVPEMAVPEVRLPEV 520

Query: 338 --LEPTTLQLPEDPEPTKP--QLPED--PEPTKPQLPEVPEPTKP--QLPEVLEPTKLQL 389
             L+ + ++LP+ PE   P  +LPE   P+ ++ +LPEV E   P  +LPEV      QL
Sbjct: 521 QLLKVSEMKLPKVPEMAVPEVRLPEVQLPKVSEMKLPEVSEVAVPEVRLPEV------QL 574

Query: 390 PEDPEPTKPQ--LPEDPETTKP-------QLPEVPEPT-------KLQLPEVPEPTKPE- 432
           P+ PE   P+  LP+ PE   P       QLP+VPE         ++QLP+VPE   PE 
Sbjct: 575 PKVPEMKVPEMKLPKVPEMKLPEMKLPEVQLPKVPEMAVPDVHLPEVQLPKVPEMKLPEM 634

Query: 433 ------LPEVPELT-------KTQLPEVPEPTKPQI--LDKKEPVLLDKKEPVLLDKKEP 477
                 LP+VPE+        + QLP+VPE   P++  +   E  L + + P + + K P
Sbjct: 635 KLPEVKLPKVPEMAVPDVHLPEVQLPKVPEMKLPKMPEMAVPEVRLPEVQLPKVSEMKLP 694

Query: 478 VLPPKPEPEILLPPKPEP---ELLLPPKPEPELLLPPKLEPKLLLPPKSEPELLLPPKPE 534
            +P    P++ LP    P   E+ +P    PE+ LP    P++ +P    PE+ LP   E
Sbjct: 695 KVPEMAVPDVHLPEVQLPKVCEMKVPDMKLPEIKLPKV--PEMAVPDVHLPEVQLPKVSE 752

Query: 535 PELLLPPKPKPELLLPPKPEPEKLLLPPKPKPKLLLPPKPESEL 578
             L       PE+ +P  P+   + LP  P+ K  LP  PE +L
Sbjct: 753 IRL-------PEMQVPKVPD---VHLPKAPEVK--LPRAPEVQL 784

Seems to be required for maintenance of peripheral nerve myelin sheath. May have a role in axon-glial interactions, possibly by interacting with the cytoplasmic domains of integral membrane proteins such as myelin-associated glycoprotein in the periaxonal regions of the Schwann cell plasma membrane. May have a role in the early phases of myelin deposition.

Homo sapiens (taxid: 9606)

>sp|Q6ZQX7|CQ097_HUMAN Uncharacterized protein C17orf97 OS=Homo sapiens GN=C17orf97 PE=2 SV=2

 Score = 50.1 bits (118), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 63/187 (33%), Positives = 85/187 (45%), Gaps = 1/187 (0%)

Query: 503 PEPELLLPPKLEPKLLLPPKSEPELLLPPKPEPELLLPPKPKPELLLPPKPEPEKLLLPP 562
           P+PE L     +P  L     +PE L    P+PE L    P PE L    P+PE L    
Sbjct: 207 PDPEALKGFHPDPDALKGFHPDPEALKGFHPDPEALKGFHPDPEALKGFHPDPEALKGI- 265

Query: 563 KPKPKLLLPPKPESELLLPPKPEPELIIPPKPEPEILIPPKPEPELLLPPKPEPEILLPP 622
            P P+ L    P+ E L    P+PE +    P+PE L     +PE L     +PE L   
Sbjct: 266 HPDPEALKGIHPDPEALKGFHPDPEALKGFHPDPEALKGFHTDPEALKGFHIDPEALKGF 325

Query: 623 KPEPELLLPPKPEPEILLPPKPEPELLLPPKPESELLLPLKPEPEILLPPKPEPELLLPP 682
            P+P+ L    P+P+ L     +PE L    P+ + L    P+PE L    P+PE L   
Sbjct: 326 HPDPKALKGFHPDPKALKGFHTDPEALKGFHPDPKALKGFHPDPEALKGFHPDPEALKGF 385

Query: 683 KPEPELL 689
            P+PE L
Sbjct: 386 HPDPEAL 392

Homo sapiens (taxid: 9606)

>sp|O55103|PRAX_MOUSE Periaxin OS=Mus musculus GN=Prx PE=1 SV=1

 Score = 50.1 bits (118), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 102/311 (32%), Positives = 154/311 (49%), Gaps = 84/311 (27%)

Query: 272 NLSDLNEDLKKPGEPEVQTPIVPEPTKQELPEVPETTKP--QLPEV--PEPTKSQLPEVP 327
            +     ++K P  PEV+ P VPE    +LP+VPE   P  QLPEV  P+ +  +LP++P
Sbjct: 427 GIGVAGPEVKAPTGPEVKLPKVPE---VKLPKVPEAAIPDVQLPEVQLPKMSDMKLPKIP 483

Query: 328 EPTKP--QLPEVLEPTTLQLPEDPEPTKPQ--LPEDPEPTKP-------QLPEVPEPTKP 376
           E   P  +LPEV      QLP+ PE   P+  LP+ PE   P       QLP+VPE   P
Sbjct: 484 EMVVPDVRLPEV------QLPKVPEMKVPEMKLPKWPEMAVPDVHLPDVQLPKVPEMKLP 537

Query: 377 QLPEVLEPT-----------------KLQLPEDPEPTKP-------QLPEDPETTKPQLP 412
           ++PE+  P                  +++LP+ PE   P       QLP+  E   P++P
Sbjct: 538 KVPEMAVPDVHLPDVQLPKVPEMKLPEMKLPKVPEMAVPDVRLPEVQLPKVSEVKLPKMP 597

Query: 413 EV------------PEPTKLQLPEVPEPTKPE--LPEV--PELTKTQLPEVPEPTKPQIL 456
           E+            P+ ++++LP++PE   P+  LPEV  P++++ +LP++PE T P I 
Sbjct: 598 EMAVPDVHLPELQLPKMSEVKLPKMPEMAVPDVRLPEVQLPKVSEMKLPKMPEMTMPDIR 657

Query: 457 --DKKEPVLLDKKEPVLL--DKKEPVLPPKPEPEILLP----PK------PE------PE 496
             + + P + D K P +   + K P +P    P++ LP    PK      PE      PE
Sbjct: 658 LPEVQLPKVPDIKLPEMKLPEIKLPKVPDMAVPDVPLPELQLPKVSDIRLPEMQVSQVPE 717

Query: 497 LLLPPKPEPEL 507
           + LP  PE +L
Sbjct: 718 VQLPKMPEMKL 728

Seems to be required for maintenance of peripheral nerve myelin sheath. May have a role in axon-glial interactions, possibly by interacting with the cytoplasmic domains of integral membrane proteins such as myelin-associated glycoprotein in the periaxonal regions of the Schwann cell plasma membrane. May have a role in the early phases of myelin deposition.

Mus musculus (taxid: 10090)

>sp|Q9D9R9|F186A_MOUSE Protein FAM186A OS=Mus musculus GN=FAM186A PE=2 SV=2

 Score = 50.1 bits (118), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 72/243 (29%), Positives = 114/243 (46%), Gaps = 30/243 (12%)

Query: 479 LPPKPEPEILLPPKPEPELLLPPKPEPELLLPPKLEPKLLLPPKSEPELLLPPKPEPELL 538
           + P P+P I L P+    L + P P+P + L P+    L + P  +P + L P+    L 
Sbjct: 625 ITPTPQP-ITLTPEQAQALGITPTPQP-ITLTPEQTQALGITPTPQP-ITLTPEQAQALG 681

Query: 539 LPPKPKPELLLPPKPEPEKLLLPPKPKPKLLLPPKPESELLLPPKPEP---------ELI 589
           + P P+P  L P   + + L + P P+P  L P + ++ L + P P+P          L 
Sbjct: 682 ITPTPQPITLTPE--QAQALGITPTPQPITLTPEQAQA-LGITPTPQPITLTPEQTQALG 738

Query: 590 IPPKPEPEILIPPKPEPELLLPPKPEPEILLPPKPEPELLLPPKPEPEILLP-------- 641
           I P P+P  L P + +  L + P P+P I L P+    L + P P+P  L P        
Sbjct: 739 ITPTPQPITLTPEQAQ-ALGITPTPQP-ITLTPEQVQALGITPTPQPITLTPEQAQALGI 796

Query: 642 -PKPEPELLLPPKPESELLLPLKPEPE-ILLPPKPEPELLLPPKPEPELLLPPKPETITT 699
            P P+P  L P + ++   L + P P+ I L P+    L + P P+P  L P + + +  
Sbjct: 797 TPTPQPITLTPEQAQA---LGITPTPQPITLTPEQTQALGITPTPQPITLTPEQAQALGI 853

Query: 700 TKT 702
           T T
Sbjct: 854 TPT 856

Mus musculus (taxid: 10090)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	1235
221054317	791	hypothetical protein, conserved in Plasm	0.177	0.276	0.306	4e-32
70942861	453	hypothetical protein [Plasmodium chabaud	0.167	0.456	0.414	2e-30
401408671	2995	conserved hypothetical protein [Neospora	0.166	0.068	0.436	3e-29
156407240	251	predicted protein [Nematostella vectensi	0.167	0.824	0.360	4e-26
343469593	1059	unnamed protein product, partial [Trypan	0.176	0.205	0.331	5e-25
213626348	1139	Mtap4 protein [Xenopus laevis]	0.170	0.184	0.436	6e-24
221060662	677	hypothetical protein, conserved in Plasm	0.174	0.317	0.341	2e-23
156394511	222	predicted protein [Nematostella vectensi	0.170	0.950	0.238	4e-22
148230813	1224	microtubule-associated protein 4 [Xenopu	0.153	0.154	0.447	1e-21
291236357	468	PREDICTED: predicted protein-like [Sacco	0.276	0.730	0.277	1e-21

>gi|221054317|ref|XP_002261906.1| hypothetical protein, conserved in Plasmodium species [Plasmodium knowlesi strain H] gi|193808366|emb|CAQ39070.1| hypothetical protein, conserved in Plasmodium species [Plasmodium knowlesi strain H]

 Score =  147 bits (371), Expect = 4e-32,   Method: Compositional matrix adjust.
 Identities = 68/222 (30%), Positives = 127/222 (57%)

Query: 704 LLDKKEPVLLDKKEPVLLDKKEPVLLDKKEPVLLDKKEPVLLDEKEPVLLDKKEPVLLDK 763
           L D+ +  LLD+ +  LLD+ +  L+D+ +  L+D+ +  L+D  +  L+D+ +  LLD+
Sbjct: 271 LTDRSDGTLLDRSDGSLLDRSDGTLMDRSDGTLMDRSDGTLMDRSDGTLMDRSDGSLLDR 330

Query: 764 KERVLLDKKEPVLLDKKEPVLLDKKEHVLLDKKETVLLDKKEPVLLDKKEPILLDKKEPV 823
            +R L+D+ +  LLDK +  L+D+ +  L+D+ +  LLDK +   +D+ +  L+D+ +  
Sbjct: 331 SDRTLVDRSDGSLLDKSDRTLVDRSDRTLIDRSDGSLLDKSDRNFIDRSDGTLMDRSDRT 390

Query: 824 LLDKKEPVLLDKKSPVLLDKKGPVILDKKEPVLLDKKEPVLLDKKEPVLLDKKAPVLLDK 883
           L+D+ +  LLDK    L+D+    +LD  +  +LD  +  ++DK +  +LDK    +LDK
Sbjct: 391 LVDRSDGSLLDKSDRTLVDRSDETLLDASDRNVLDNFDRNVMDKFDRNVLDKFNRNVLDK 450

Query: 884 KEPVLLDKKEPVLLDKKEPVLLDKKEPILFEKAALKVQTKPE 925
            +  +LDK    +LD+ +  +LDK    + +K    V  K +
Sbjct: 451 FDRNVLDKFNRNVLDRFDRNVLDKFNRNVLDKFDRNVCDKFD 492

Source: Plasmodium knowlesi strain H

Species: Plasmodium knowlesi

Genus: Plasmodium

Order: Haemosporida

Class: Aconoidasida

Phylum: Apicomplexa

Superkingdom: Eukaryota

>gi|70942861|ref|XP_741546.1| hypothetical protein [Plasmodium chabaudi chabaudi] gi|56519994|emb|CAH86804.1| hypothetical protein PC302162.00.0 [Plasmodium chabaudi chabaudi]

 Score =  141 bits (356), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 87/210 (41%), Positives = 90/210 (42%), Gaps = 3/210 (1%)

Query: 704 LLDKKEPVLLDKKEPVLLDKKEPVLLDKKEPVLLDKKEPVLLDEKEPVLLDKKEPVLLDK 763
            L+ KE    D KE    D KEP   D KEP   D KEP   D KEP   D KEP   D 
Sbjct: 5   FLNNKETETADNKEAETTDNKEPETADNKEPETADNKEPETADNKEPETADNKEPETADN 64

Query: 764 KERVLLDKKEPVLLDKKEPVLLDKKEHVLLDKKETVLLDKKEPVLLDKKEPILLDKKEPV 823
           KE    D KEP   D KE    D KE    D KET   D KEP   D KE    D KE  
Sbjct: 65  KEDETADNKEPETTDNKEDETTDNKETETADNKETETTDNKEPETTDNKEAETTDNKEDE 124

Query: 824 LLDKKEPVLLDKKSPVLLDKKGPVILDKKEP-VLLDKKEPVLLDKKEPVLLDKKAP-VLL 881
             D KE    D K P   D K     D KE   + D KEP   D KE    D K    + 
Sbjct: 125 TTDNKEDETADNKEPETTDNKEDETTDNKETETVSDNKEPETTDNKETETADNKEDETVS 184

Query: 882 DKKEP-VLLDKKEPVLLDKKEPVLLDKKEP 910
           D KEP    D KE    D KE    D KEP
Sbjct: 185 DNKEPETTSDNKETETTDNKEDETADNKEP 214

Source: Plasmodium chabaudi chabaudi

Species: Plasmodium chabaudi

Genus: Plasmodium

Order: Haemosporida

Class: Aconoidasida

Phylum: Apicomplexa

Superkingdom: Eukaryota

>gi|401408671|ref|XP_003883784.1| conserved hypothetical protein [Neospora caninum Liverpool] gi|325118201|emb|CBZ53752.1| conserved hypothetical protein [Neospora caninum Liverpool]

 Score =  137 bits (346), Expect = 3e-29,   Method: Compositional matrix adjust.
 Identities = 90/206 (43%), Positives = 123/206 (59%)

Query: 706 DKKEPVLLDKKEPVLLDKKEPVLLDKKEPVLLDKKEPVLLDEKEPVLLDKKEPVLLDKKE 765
           D+KE V  D+KE V  D+KE V  D+KE V  D+KE V  DEKE V  D++E V  D+KE
Sbjct: 539 DEKEKVASDEKEKVASDEKEKVASDEKEKVASDEKEKVASDEKEKVASDEEEKVASDEKE 598

Query: 766 RVLLDKKEPVLLDKKEPVLLDKKEHVLLDKKETVLLDKKEPVLLDKKEPILLDKKEPVLL 825
           +V  D+KE V  D++E    D+KE V  D+KE V  D+KE V  D+KE    D+KE    
Sbjct: 599 KVASDEKEKVASDEEEKARNDEKEKVASDEKEKVASDEKEKVASDEKESAASDEKESAAS 658

Query: 826 DKKEPVLLDKKSPVLLDKKGPVILDKKEPVLLDKKEPVLLDKKEPVLLDKKAPVLLDKKE 885
           D++E V  D+K  V  D+K     D++E V  D+KE V  D+KE V  D+K  V  D++E
Sbjct: 659 DEEEKVASDEKEKVASDEKESAASDEEEKVASDEKEKVASDEKEKVASDEKEKVASDEEE 718

Query: 886 PVLLDKKEPVLLDKKEPVLLDKKEPI 911
            V  D+KE V  D++E    D+KE +
Sbjct: 719 KVASDEKEKVASDEEEKARNDEKEKV 744

Source: Neospora caninum Liverpool

Species: Neospora caninum

Genus: Neospora

Family: Sarcocystidae

Order: Eucoccidiorida

Class: Coccidia

Phylum: Apicomplexa

Superkingdom: Eukaryota

>gi|156407240|ref|XP_001641452.1| predicted protein [Nematostella vectensis] gi|156228591|gb|EDO49389.1| predicted protein [Nematostella vectensis]

 Score =  127 bits (319), Expect = 4e-26,   Method: Composition-based stats.
 Identities = 75/208 (36%), Positives = 114/208 (54%), Gaps = 1/208 (0%)

Query: 706 DKKEPVLLDKKEPVLLDKKEPVLLDKKEPVLLDKKEPVLLDEKEPVLLDKKEPVLLDKKE 765
           D +  V+LD K P + D +  V+LD K P + D +  V+ D    V+LD K P + D + 
Sbjct: 8   DPRCSVMLDSKGPYMRDARCSVMLDSKGPYMRDARYFVMRDAGCSVMLDSKGPYMRDARC 67

Query: 766 RVLLDKKEPVLLD-KKEPVLLDKKEHVLLDKKETVLLDKKEPVLLDKKEPILLDKKEPVL 824
            V+LD K P + D  K P + D +  V+LD K   + D +   +L+ K P + D +  V+
Sbjct: 68  SVMLDSKGPYMRDASKGPYMRDPRCSVMLDSKGPYMQDARCSDMLNSKGPYMRDVRCSVM 127

Query: 825 LDKKEPVLLDKKSPVLLDKKGPVILDKKEPVLLDKKEPVLLDKKEPVLLDKKAPVLLDKK 884
           LD K P + D +  V+L+ KGP I D +  V+LD K P + D +  V+LD K P + D +
Sbjct: 128 LDSKGPYMRDARCSVMLEGKGPYIRDARCSVMLDSKGPYMRDARCSVMLDSKGPYMRDAR 187

Query: 885 EPVLLDKKEPVLLDKKEPVLLDKKEPIL 912
             V+LD K P + D +  V+LD K P +
Sbjct: 188 CSVMLDSKGPYMRDARCSVMLDSKGPYM 215

Source: Nematostella vectensis

Species: Nematostella vectensis

Genus: Nematostella

Family: Edwardsiidae

Order: Actiniaria

Class: Anthozoa

Phylum: Cnidaria

Superkingdom: Eukaryota

>gi|343469593|emb|CCD17471.1| unnamed protein product, partial [Trypanosoma congolense IL3000]

 Score =  124 bits (310), Expect = 5e-25,   Method: Compositional matrix adjust.
 Identities = 76/229 (33%), Positives = 114/229 (49%), Gaps = 11/229 (4%)

Query: 478 VLPPKPEPEILLPPKPEPELLLPPKPEPELLLPPKLEPKLLLPP----------KSEPEL 527
           V+PP PE  ++  PK    L++PP PE   +  PK    L++PP          K    L
Sbjct: 704 VVPPAPETSLVAAPKQRDSLVVPPAPETSHVAAPKQRDSLVVPPAPETSDVAAPKQRDSL 763

Query: 528 LLPPKPEPELLLPPKPKPELLLPPKPEPEKLLLPPKPKPKLLLPPKPESELLLPPKPEPE 587
           ++PP PE   +  PK +  L++PP PE   +  P K +  L++PP PE+  +  PK    
Sbjct: 764 VVPPAPETSHVAAPKQRDSLVVPPAPETSHVAAP-KQRDSLVVPPAPETSDVAAPKQRDS 822

Query: 588 LIIPPKPEPEILIPPKPEPELLLPPKPEPEILLPPKPEPELLLPPKPEPEILLPPKPEPE 647
           LI+PP  E   +  PK    L++PP  E   +  PK    L++PP PE   +  PK    
Sbjct: 823 LIVPPALEATDVTAPKQRDSLVVPPALEATDVAAPKQRDSLVVPPAPETSDVAAPKQRDS 882

Query: 648 LLLPPKPESELLLPLKPEPEILLPPKPEPELLLPPKPEPELLLPPKPET 696
           L++PP  E+  +   K    +++PP PE   +  PK    L++PP PET
Sbjct: 883 LVVPPALETSDVASPKQRDSLVVPPAPETSDVAAPKQRDSLVVPPAPET 931

Source: Trypanosoma congolense IL3000

Species: Trypanosoma congolense

Genus: Trypanosoma

Family: Trypanosomatidae

Order: Kinetoplastida

Superkingdom: Eukaryota

>gi|213626348|gb|AAI70295.1| Mtap4 protein [Xenopus laevis]

 Score =  120 bits (300), Expect = 6e-24,   Method: Compositional matrix adjust.
 Identities = 92/211 (43%), Positives = 116/211 (54%), Gaps = 1/211 (0%)

Query: 486 EILLPPKPEPELLLPPKPEPELLLPPKLEPKLLLPPKSEPELLLPPKPEPELLLPPKPKP 545
           E  LP K E + LL  K E E L P K E + LLP  +E E+L P  PE E+L    P+ 
Sbjct: 414 EDFLPSKTEDKDLLQYKTEDEDLSPLKTEGQDLLPLITEDEVLNPATPEAEVLTSHIPEA 473

Query: 546 ELLLPPKPEPEKLLLPPKPKPKLLLPPKPESELLLPPKPEPELIIPPKPEPEILIPPKPE 605
           E+L  P PE E +L  P P+ ++L  P PE+E+L  P PE E++  P PE E+L  P PE
Sbjct: 474 EVLTSPIPEAE-VLTSPIPEAEVLTSPIPEAEVLTSPIPEAEVLTSPIPEAEVLTSPIPE 532

Query: 606 PELLLPPKPEPEILLPPKPEPELLLPPKPEPEILLPPKPEPELLLPPKPESELLLPLKPE 665
            E+L  P PE E+L  P PE E+L  P PE E+L  P PE E+L  P PE ++L     E
Sbjct: 533 AEVLTSPIPEAEVLTSPIPEAEVLTSPIPEVEVLFAPIPEAEVLSAPIPEEDVLSAPISE 592

Query: 666 PEILLPPKPEPELLLPPKPEPELLLPPKPET 696
            E+L  P PE E    P PE E    P  E 
Sbjct: 593 VEVLSAPIPEAEYFSAPTPEVEYFSAPTREA 623

Source: Xenopus laevis

Species: Xenopus laevis

Genus: Xenopus

Family: Pipidae

Order: Anura

Class: Amphibia

Phylum: Chordata

Superkingdom: Eukaryota

>gi|221060662|ref|XP_002260976.1| hypothetical protein, conserved in Plasmodium species [Plasmodium knowlesi strain H] gi|193811050|emb|CAQ42948.1| hypothetical protein, conserved in Plasmodium species [Plasmodium knowlesi strain H]

 Score =  119 bits (297), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 74/217 (34%), Positives = 125/217 (57%)

Query: 704 LLDKKEPVLLDKKEPVLLDKKEPVLLDKKEPVLLDKKEPVLLDEKEPVLLDKKEPVLLDK 763
           L DK +  L+D+     LDK +  LLD+ +  LLD+ +  LLD  +  LLD+ +  LLD+
Sbjct: 111 LFDKSDRNLIDRSNRNPLDKFDRNLLDRSDRNLLDRSDRNLLDRSDRNLLDRSDRNLLDR 170

Query: 764 KERVLLDKKEPVLLDKKEPVLLDKKEHVLLDKKETVLLDKKEPVLLDKKEPILLDKKEPV 823
            +R LLD+ +  LLD+ +  LLD+ +  LLD+ +  LLD+ +  LLDK +  L DK +  
Sbjct: 171 SDRNLLDRSDRNLLDRSDRNLLDRSDRNLLDRSDRNLLDRSDDNLLDKSDESLFDKSDRN 230

Query: 824 LLDKKEPVLLDKKSPVLLDKKGPVILDKKEPVLLDKKEPVLLDKKEPVLLDKKAPVLLDK 883
           L+D+ +  LLDK    L+D+    ++DK +  +LDK +  +LDK +  ++DK    ++DK
Sbjct: 231 LVDRSDDNLLDKSDRNLIDRYDRNVIDKFDRNVLDKFDRNVLDKFDRNVVDKFNRNVVDK 290

Query: 884 KEPVLLDKKEPVLLDKKEPVLLDKKEPILFEKAALKV 920
               ++DK +  ++DK    ++DK +  + +K    V
Sbjct: 291 FNRNVVDKFDRNVVDKFNRNVVDKFDRNVLDKFDRNV 327

Source: Plasmodium knowlesi strain H

Species: Plasmodium knowlesi

Genus: Plasmodium

Order: Haemosporida

Class: Aconoidasida

Phylum: Apicomplexa

Superkingdom: Eukaryota

>gi|156394511|ref|XP_001636869.1| predicted protein [Nematostella vectensis] gi|156223976|gb|EDO44806.1| predicted protein [Nematostella vectensis]

 Score =  114 bits (285), Expect = 4e-22,   Method: Compositional matrix adjust.
 Identities = 51/214 (23%), Positives = 135/214 (63%)

Query: 703 LLLDKKEPVLLDKKEPVLLDKKEPVLLDKKEPVLLDKKEPVLLDEKEPVLLDKKEPVLLD 762
           LL+ +  P+L+ +  P+L+ +  P+L+ +  P+L+D+  P+L+ +  P+L+++  P+L+ 
Sbjct: 7   LLVRQGPPLLVHQGPPLLVHQGPPLLVHQGPPLLMDEGPPLLVHQGPPLLINQGPPLLVH 66

Query: 763 KKERVLLDKKEPVLLDKKEPVLLDKKEHVLLDKKETVLLDKKEPVLLDKKEPILLDKKEP 822
           +   +L+ +  P+L+++  P+L+ +   +L+ +   +L+++  P+L+ +  P+L+ +  P
Sbjct: 67  QGPPLLVHQGPPLLMNQGPPLLVHQGPPLLVHQGPPLLMNQGPPLLVHQGPPLLVHQGPP 126

Query: 823 VLLDKKEPVLLDKKSPVLLDKKGPVILDKKEPVLLDKKEPVLLDKKEPVLLDKKAPVLLD 882
           +L+ +  P+L+ +  P+L+ +  P+++++  P+L+ +  P+L+ +  P+L+ +  P+L+ 
Sbjct: 127 LLVHQGPPLLVHQGPPLLVHQGPPLLMNQGPPLLVHQGPPLLVHQGPPLLMHQGPPLLVH 186

Query: 883 KKEPVLLDKKEPVLLDKKEPVLLDKKEPILFEKA 916
           +  P+L+ +  P+L+ +  P+L+ +  P+L  + 
Sbjct: 187 QGPPLLVHQGPPLLVHQGPPLLVHQGPPLLVHQG 220

Source: Nematostella vectensis

Species: Nematostella vectensis

Genus: Nematostella

Family: Edwardsiidae

Order: Actiniaria

Class: Anthozoa

Phylum: Cnidaria

Superkingdom: Eukaryota

>gi|148230813|ref|NP_001083770.1| microtubule-associated protein 4 [Xenopus laevis] gi|4063005|dbj|BAA36221.1| XMAP4 [Xenopus laevis]

 Score =  112 bits (280), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 85/190 (44%), Positives = 107/190 (56%), Gaps = 1/190 (0%)

Query: 506 ELLLPPKLEPKLLLPPKSEPELLLPPKPEPELLLPPKPKPELLLPPKPEPEKLLLPPKPK 565
           E  LP K E K LL  K+E E L P K E + LLP   + E+L P  PE E +L    P+
Sbjct: 414 EDFLPSKTEDKDLLQYKTEDEDLSPLKTEGQDLLPLITEDEVLNPATPEAE-VLTSHIPE 472

Query: 566 PKLLLPPKPESELLLPPKPEPELIIPPKPEPEILIPPKPEPELLLPPKPEPEILLPPKPE 625
            ++L  P PE+E+L  P PE E++  P PE E+L  P PE E+L  P PE E+L  P PE
Sbjct: 473 AEVLTSPIPEAEVLTSPIPEAEVLTSPIPEAEVLTSPIPEAEVLTSPIPEAEVLTSPIPE 532

Query: 626 PELLLPPKPEPEILLPPKPEPELLLPPKPESELLLPLKPEPEILLPPKPEPELLLPPKPE 685
            E+L  P PE E+L  P PE E+L  P PE E+L    PE ++L  P  E E+L  P PE
Sbjct: 533 AEVLTSPIPEAEVLTSPIPEAEVLTSPIPEVEVLFAPIPEEDVLSAPISEVEVLSAPIPE 592

Query: 686 PELLLPPKPE 695
            E    P PE
Sbjct: 593 AEYFSAPTPE 602

Source: Xenopus laevis

Species: Xenopus laevis

Genus: Xenopus

Family: Pipidae

Order: Anura

Class: Amphibia

Phylum: Chordata

Superkingdom: Eukaryota

>gi|291236357|ref|XP_002738106.1| PREDICTED: predicted protein-like [Saccoglossus kowalevskii]

 Score =  112 bits (280), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 120/432 (27%), Positives = 240/432 (55%), Gaps = 90/432 (20%)

Query: 619 LLPPKPEPELLLPPKPEPEILLPPKPEPELLLPPKPESELLLPLKPEPEILLPPKPEPEL 678
           ++  K E  L++  K E  +++  K E  +++  K E+ +++  K E  +++  K E  +
Sbjct: 1   MVTEKKET-LIVTEKEET-VIVTEKKET-VIVTEKKET-VMVTEKKEN-VIVTEKKET-V 54

Query: 679 LLPPKPEPELLLPPKPETITTTKTLLLDKKEPVLL-DKKEPVLLD-KKEPVLL------- 729
           ++  K E  +++  K ET+     ++ +KKE V++ +KKE V++  KKE V++       
Sbjct: 55  IVTEKREN-VMVMEKKETV-----MVTEKKETVMVTEKKEIVMVTLKKETVMVTEKRGNC 108

Query: 730 ---------DKKEPVLL-DKKEPVLLDEKEPVLL-------------------------- 753
                    +KK PV++ +KKE V++ EK+  ++                          
Sbjct: 109 REQETLMVTEKKVPVIVTEKKERVMVTEKKKTVMVTEKKNTNERLRRRRKLQQLLSRRIL 168

Query: 754 ---DKKEPVLL-DKKERVLL-DKKEPVLL-DKKEPVLL-DKKEHVLL-DKKETVLL-DKK 804
              +KKE V++ +KKE V++ +KKE  ++ +KKE V++ +K+E V++ +K+ETV++ +KK
Sbjct: 169 MLTEKKETVMVNEKKETVMVNEKKETGMVNEKKETVMVTEKRETVMITEKRETVMVTEKK 228

Query: 805 EPVLL-DKKEPILL-DKKEPVLLDKKEPVLL--DKKSPVLLDKKGPVILD--KKEPVLL- 857
           E V++ +K+E +++ +KKE V++++K+  ++  +K+  V++ +K  +++   KKE V++ 
Sbjct: 229 ETVMVTEKRETVMVTEKKENVIVNEKKKTIMVTEKRETVMVTEKKEIVMVILKKETVMVT 288

Query: 858 DKKEPVLL-DKKEPVLL-DKKAPVL-LDKKEPVLL-DKKEPVLL-DKKEPVLLD-KKEPI 911
           +KKE V++ +KKE V++ +KK  V+ ++KKE V++ +KKE V++ +KKE V++  KKE +
Sbjct: 289 EKKETVMVTEKKETVMVTEKKETVMVIEKKETVMVTEKKETVMVTEKKETVMVTVKKEIV 348

Query: 912 LF--EKAALKVQTKPEVFKVPPKDKDEDEPIFFNEPKSP---PEKPHHSPI--PPPPPVL 964
           +   ++  + V  K E+  V  K     E I  NE +      EK  +  +       V+
Sbjct: 349 MVTEKRETVMVTVKREIVMVTEK----RETIMVNEKRETVVVTEKKENVMVNEKRETVVV 404

Query: 965 NPPNSELVYKDK 976
              N  ++  +K
Sbjct: 405 TEKNERVMVTEK 416

Source: Saccoglossus kowalevskii

Species: Saccoglossus kowalevskii

Genus: Saccoglossus

Family: Harrimaniidae

Class: Enteropneusta

Phylum: Hemichordata

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	1235
TAIR|locus:2144716	370	PELPK1 "AT5G09530" [Arabidopsi	0.162	0.543	0.440	6.6e-41
GENEDB_PFALCIPARUM|PF10_0374	9563	PF10_0374 "Pf 11-1 protein" [P	0.180	0.023	0.415	9.5e-33
UNIPROTKB|Q8I6U6	9563	PF10_0374 "Pf11-1 protein" [Pl	0.180	0.023	0.415	9.5e-33
UNIPROTKB|F1MDS0	1337	F1MDS0 "Uncharacterized protei	0.319	0.295	0.259	6.7e-20
MGI|MGI:1891344	1054	Prg4 "proteoglycan 4 (megakary	0.243	0.285	0.329	1.3e-28
UNIPROTKB|J3KP74	854	PRG4 "Proteoglycan 4" [Homo sa	0.199	0.288	0.313	1.6e-17
UNIPROTKB|Q92954	1404	PRG4 "Proteoglycan 4" [Homo sa	0.199	0.175	0.313	6.7e-17
UNIPROTKB|G3MYM8	1077	G3MYM8 "Uncharacterized protei	0.326	0.374	0.271	9.7e-19
UNIPROTKB|F1N757	34	F1N757 "Uncharacterized protei	0.144	5.235	0.375	1.4e-19
RGD|1308976	963	Prg4 "proteoglycan 4, (megakar	0.215	0.276	0.316	6.5e-24

TAIR|locus:2144716 PELPK1 "AT5G09530" [Arabidopsis thaliana (taxid:3702)]

 Score = 442 (160.7 bits), Expect = 6.6e-41, P = 6.6e-41
 Identities = 93/211 (44%), Positives = 138/211 (65%)

Query:   261 KIKENIDPELGNLSDLN--EDLKKPGEPEVQTPIVPEPTKQELPEVPETTKPQLPEVPEP 318
             KI E   PEL  + ++   E+ K P  P+++ P  PE  K ELP++PE  KP+LP+VPE 
Sbjct:    80 KIPEIPKPELPKVPEIPKPEETKLPDIPKLELPKFPEIPKPELPKMPEIPKPELPKVPEI 139

Query:   319 TKSQLPEVPEPTKPQLPEVLEPTTLQLPEDPEPTKPQLPEDPEPTKPQLPEVPEPTKPQL 378
              K +LP++PE  KP+LP+  E     LP+ PE +KP++P+  E  KP+ P+VPE  KP+L
Sbjct:   140 QKPELPKMPEIPKPELPKFPEIPKPDLPKFPENSKPEVPKLMETEKPEAPKVPEIPKPEL 199

Query:   379 PEVLEPTKLQLPEDPE------PTKPQLPEDPETTKPQLPEVPEPTKLQLPEVPEPTKPE 432
             P++ E  KL+ P+ PE      P  P+LP+ PE  KP+LP++PE  KL+ P+VPE  KPE
Sbjct:   200 PKLPEVPKLEAPKVPEIQKPELPKMPELPKMPEIQKPELPKLPEVPKLEAPKVPEIQKPE 259

Query:   433 LPEVPELTKTQLPEVPEPTKPQILDKKEPVL 463
             LP++PEL K  +PE+ +P  P++ + ++P L
Sbjct:   260 LPKMPELPK--MPEIQKPELPKMPEIQKPEL 288

GO:0009791 "post-embryonic development" evidence=IMP

GENEDB_PFALCIPARUM|PF10_0374 PF10_0374 "Pf 11-1 protein" [Plasmodium falciparum (taxid:5833)]

 Score = 277 (102.6 bits), Expect = 9.5e-33, Sum P(2) = 9.5e-33
 Identities = 94/226 (41%), Positives = 103/226 (45%)

Query:   715 KKEPVLLDKKEPVLLDKKEPVLLDKKEPVLLDEKEPVLLDKKEPVLLDKKERVLLDKKEP 774
             KKE V   KKE     KKE V   KKE V   +KE   + KKE V   KKE+V   KKE 
Sbjct:  9262 KKEKVPETKKEKAPAPKKEKVQAPKKEKVPAPKKEKPAVPKKEKVPEPKKEKVPEPKKEK 9321

Query:   775 VLLDKKEPVLLDKKEHVLLDKKETVLLDKKEPVLLDKKEPILLDKKEPVLLDKKEPVLLD 834
                 KKE V   KKE     KKE     KKE     KKE     KKE   + KKE   + 
Sbjct:  9322 APAPKKEKVQAPKKEKAPAPKKEKAPAPKKEKAPAPKKEKAPAPKKEKPAVPKKEKPAVP 9381

Query:   835 KKSPVLLDKKGPVILDKKEPVLLDKKEPVLLDKKEPVLLDKKAPVLLDKKEPVLLDKKEP 894
             KK  V   KK  V   KKE V   KKE V + KKE V   KK  V   KKE V   KKE 
Sbjct:  9382 KKEKVPETKKEKVPETKKEKVPETKKEKVPVPKKEKVPAPKKEKVPAPKKEKVPAPKKEK 9441

Query:   895 VLLDKKEPVLLDKKEPILFEKAALKVQTKPEVFKVP-PKDKDEDEP 939
               + KKE V   KKE     K     + K E  K P PK +   EP
Sbjct:  9442 PAVPKKEKVPETKKEKAPEPKKEKAPEPKKE--KAPEPKKEKAPEP 9485

GO:0007276 "gamete generation" evidence=TAS

UNIPROTKB|Q8I6U6 PF10_0374 "Pf11-1 protein" [Plasmodium falciparum 3D7 (taxid:36329)]

 Score = 277 (102.6 bits), Expect = 9.5e-33, Sum P(2) = 9.5e-33
 Identities = 94/226 (41%), Positives = 103/226 (45%)

Query:   715 KKEPVLLDKKEPVLLDKKEPVLLDKKEPVLLDEKEPVLLDKKEPVLLDKKERVLLDKKEP 774
             KKE V   KKE     KKE V   KKE V   +KE   + KKE V   KKE+V   KKE 
Sbjct:  9262 KKEKVPETKKEKAPAPKKEKVQAPKKEKVPAPKKEKPAVPKKEKVPEPKKEKVPEPKKEK 9321

Query:   775 VLLDKKEPVLLDKKEHVLLDKKETVLLDKKEPVLLDKKEPILLDKKEPVLLDKKEPVLLD 834
                 KKE V   KKE     KKE     KKE     KKE     KKE   + KKE   + 
Sbjct:  9322 APAPKKEKVQAPKKEKAPAPKKEKAPAPKKEKAPAPKKEKAPAPKKEKPAVPKKEKPAVP 9381

Query:   835 KKSPVLLDKKGPVILDKKEPVLLDKKEPVLLDKKEPVLLDKKAPVLLDKKEPVLLDKKEP 894
             KK  V   KK  V   KKE V   KKE V + KKE V   KK  V   KKE V   KKE 
Sbjct:  9382 KKEKVPETKKEKVPETKKEKVPETKKEKVPVPKKEKVPAPKKEKVPAPKKEKVPAPKKEK 9441

Query:   895 VLLDKKEPVLLDKKEPILFEKAALKVQTKPEVFKVP-PKDKDEDEP 939
               + KKE V   KKE     K     + K E  K P PK +   EP
Sbjct:  9442 PAVPKKEKVPETKKEKAPEPKKEKAPEPKKE--KAPEPKKEKAPEP 9485

GO:0007276 "gamete generation" evidence=TAS

UNIPROTKB|F1MDS0 F1MDS0 "Uncharacterized protein" [Bos taurus (taxid:9913)]

 Score = 275 (101.9 bits), Expect = 6.7e-20, P = 6.7e-20
 Identities = 114/439 (25%), Positives = 167/439 (38%)

Query:    61 TVEHSRRPKNTQLHQDSS---HGNILETKPPNLLQQNKSHENIPENSETPTPNLDGTGQL 117
             T ++   P+   + +D S   +G+   T  PN+    ++         T  P L     L
Sbjct:   204 TPKNKPTPEPPVIDEDGSGLDNGDFKLTPTPNIPTTQRNKVTTTPKITTVKPTLPKPS-L 262

Query:   118 NDNNKSVIKWFLENVECLLDYLVQQKETANVNSADLVNNRENVVKPVERKDGKETTEKET 177
               N+ +  K     V    +  V+ KET+  N     + +E      E +  + T+ K  
Sbjct:   263 PPNSDTT-KEIPSTVN--RETTVETKETSTTNKPTSTSAKEKTTSAKETRTAENTSTKGL 319

Query:   178 GKIAXXXXXXXXXXXXFAKLADSETNPTEVAERTAPESSKRTDSKEDIENRVDNNDGTI- 236
                               + + + T P E A  T  E +  T +KE           T  
Sbjct:   320 APTPEVPAISTPKAETITR-SPTPTTPKEPAP-TTKEPALTTTTKEPASTTPKKPAPTTP 377

Query:   237 -----ATDEALKAIESQRRVKRRAAKTRDKIKENIDPELGNLSDLNEDLKKPGEPEVQTP 291
                   T  +    E +    ++ A T  K      P+    +        P EP   TP
Sbjct:   378 KETAPTTPRSPTTKEPEPTTPKQPAPTTPKEPAPTTPKETAPTTKEPAPTTPKEPAPTTP 437

Query:   292 IVPEPT--KQELPEVPETTKPQLPEVPEPTKSQLPEVPEPTKPQLPEVLEPTTLQLPEDP 349
               P PT  K+  P  P+   P  P+ PEP  +  P+ P PT P+ P    PTT   P++P
Sbjct:   438 KEPAPTTTKEPAPTTPKEPAPTTPKEPEPAPTT-PKEPAPTTPKEPT---PTT---PKEP 490

Query:   350 EPTKPQ-----LPEDPEPTKPQ------LPEVPEPT-KPQLPEVLEPTKLQLPEDPEPTK 397
              PT P+      P++P PT P+       P+ P PT K   P   EP      ++P PT 
Sbjct:   491 APTTPKEPAPTTPKEPTPTTPKEPAPTTTPKEPAPTTKEPEPTTKEPAPTTTTKEPAPTI 550

Query:   398 PQLPEDPETTKPQLPEV-PEPTKLQLPEVPEPTKPE--LPEVPELTKTQLPEVPEPT--- 451
             P+ P  P T K   P    EPT    P+ P PT P+   P  P+      P+ P PT   
Sbjct:   551 PKEPA-PTTPKEPAPTTHKEPTPTTTPKEPAPTSPKEPAPTSPKEPAPTSPKEPAPTTTP 609

Query:   452 -KPQILDKKEPVLLDKKEP 469
              +P   D KEP   + KEP
Sbjct:   610 KEPAPTDPKEPAPAEPKEP 628

GO:0030247 "polysaccharide binding" evidence=IEA

GO:0006955 "immune response" evidence=IEA

GO:0005044 "scavenger receptor activity" evidence=IEA

MGI|MGI:1891344 Prg4 "proteoglycan 4 (megakaryocyte stimulating factor, articular superficial zone protein)" [Mus musculus (taxid:10090)]

 Score = 354 (129.7 bits), Expect = 1.3e-28, P = 1.3e-28
 Identities = 111/337 (32%), Positives = 157/337 (46%)

Query:   151 ADLVNNRENVVKPVERKDGKETTEKETGKIAXXXXXXXXXXXXFA-KLADSETNPTEVAE 209
             A L +N+E  V+       KETT       A             A K +D +  PT    
Sbjct:   271 ASLASNKETTVET------KETTATNKQSSASKKKTTSVKETRSAEKTSDKDVEPTS--- 321

Query:   210 RTAPESSKRTDSKEDIENRVDNNDGTIATD-EALKAIESQRRVKRRAAKTRDKIKENIDP 268
              T P++S  T +K+ +    ++    +  + E   A E     K+    TR + +     
Sbjct:   322 -TTPKNSAPTTTKKPVTTTKESKFLPLPQEPEPTTAKEPPPTTKKPEPTTRKEPEPTTPK 380

Query:   269 ELGNLSDLNEDLKKPGEPEVQTPIVPEPT-KQELPEVPETTKPQLPEVPEPTKSQLPEVP 327
             E    +    +   P EPE  TP  P PT K+  P  P+   P  P+ PEPT ++ PE P
Sbjct:   381 EPEPTTPKEPEPTTPKEPEPTTPKEPPPTTKKPEPTTPKEPGPTTPKEPEPTTTKEPE-P 439

Query:   328 EPTK-PQLP--EVLEPTTLQLPEDPEPTKPQLPE-----DPEPTKPQLPE--VPEPTKPQ 377
               TK P+    +  EPTT   P++PEPT P+ PE     +PEPT P+ PE   P+  +P 
Sbjct:   440 TTTKEPESTTRKEPEPTT---PKEPEPTTPKEPEPTTLKEPEPTTPKEPEPTTPKEPEPT 496

Query:   378 LPEVLEPTKLQLPEDPEPTKPQLPED--PETTKPQLPEVPEPTKLQLPEVPEPTKPELPE 435
              P+  EPT    P++PEPT P+ PE   P+  +P  P+ PEPT  + PE   P KPE P 
Sbjct:   497 TPKEPEPTT---PKEPEPTTPKEPEPTTPKEPEPTTPKEPEPTTPKEPEPTTPKKPE-PT 552

Query:   436 VPELTKTQLPEVPEPT---KPQILDKKEPVLLDKKEP 469
              P+      P+ PEPT   +P+    KEP    +KEP
Sbjct:   553 TPKEPVPTTPKEPEPTTPKEPEPTTPKEPEPTTRKEP 589

GO:0005044 "scavenger receptor activity" evidence=IEA

GO:0005576 "extracellular region" evidence=IEA

GO:0005615 "extracellular space" evidence=IDA

GO:0006955 "immune response" evidence=IEA

GO:0030247 "polysaccharide binding" evidence=IEA

GO:0042127 "regulation of cell proliferation" evidence=IMP

GO:0045409 "negative regulation of interleukin-6 biosynthetic process" evidence=IMP

GO:0071425 "hematopoietic stem cell proliferation" evidence=IMP

UNIPROTKB|J3KP74 PRG4 "Proteoglycan 4" [Homo sapiens (taxid:9606)]

 Score = 259 (96.2 bits), Expect = 1.6e-17, Sum P(2) = 1.6e-17
 Identities = 86/274 (31%), Positives = 111/274 (40%)

Query:   202 TNPTEVAERTAPESSKRTDSKEDIENRVDNNDGTIATDEALKAIESQRRVKRRAAKTRDK 261
             T P E A  TAP+    T  KE           T   + +    +       ++A T  K
Sbjct:   343 TTPKEPAP-TAPKKPAPTTPKEPAPTTPKEPAPTTTKEPSPTTPKEPAPTTTKSAPTTTK 401

Query:   262 IKENIDPELGNLSDLNEDLKKPGEPEVQTPIVPEPT--KQELPEVPETTKPQLPEVPEPT 319
                    +    +          EP   TP  P PT  K+  P  P+   P  P+ P PT
Sbjct:   402 EPAPTTTKSAPTTPKEPSPTTTKEPAPTTPKEPAPTTPKKPAPTTPKEPAPTTPKEPAPT 461

Query:   320 KSQLPEVPEPTKPQLPEVLEPTTLQLPEDPEPTKPQ--LPEDPEPTKPQLPEVPEPTKPQ 377
              ++ P    PT P+ P    PTT   P++  PT P+   P  PE   P  PE P PT P 
Sbjct:   462 TTKKPA---PTTPKEPA---PTT---PKETAPTTPKKLTPTTPEKLAPTTPEKPAPTTP- 511

Query:   378 LPEVLEPTKLQLPEDPEPTKPQ--LPEDPETTKPQLPEVPEPTKLQLPEVPEPTKPELPE 435
               E L PT    PE+P PT P+   P  P+   P  P+ P PT    P+ P PT P+ P 
Sbjct:   512 --EELAPTT---PEEPTPTTPEEPAPTTPKAAAPNTPKEPAPTT---PKEPAPTTPKEP- 562

Query:   436 VPELTKTQLPEVPEPTKPQILDKKEPVLLDKKEP 469
              P   K   P  P+ T P  L  KEP     K+P
Sbjct:   563 APTTPKETAPTTPKGTAPTTL--KEPAPTTPKKP 594

GO:0005044 "scavenger receptor activity" evidence=IEA

GO:0006955 "immune response" evidence=IEA

GO:0030247 "polysaccharide binding" evidence=IEA

UNIPROTKB|Q92954 PRG4 "Proteoglycan 4" [Homo sapiens (taxid:9606)]

 Score = 259 (96.2 bits), Expect = 6.7e-17, Sum P(2) = 6.7e-17
 Identities = 86/274 (31%), Positives = 111/274 (40%)

Query:   202 TNPTEVAERTAPESSKRTDSKEDIENRVDNNDGTIATDEALKAIESQRRVKRRAAKTRDK 261
             T P E A  TAP+    T  KE           T   + +    +       ++A T  K
Sbjct:   477 TTPKEPAP-TAPKKPAPTTPKEPAPTTPKEPAPTTTKEPSPTTPKEPAPTTTKSAPTTTK 535

Query:   262 IKENIDPELGNLSDLNEDLKKPGEPEVQTPIVPEPT--KQELPEVPETTKPQLPEVPEPT 319
                    +    +          EP   TP  P PT  K+  P  P+   P  P+ P PT
Sbjct:   536 EPAPTTTKSAPTTPKEPSPTTTKEPAPTTPKEPAPTTPKKPAPTTPKEPAPTTPKEPAPT 595

Query:   320 KSQLPEVPEPTKPQLPEVLEPTTLQLPEDPEPTKPQ--LPEDPEPTKPQLPEVPEPTKPQ 377
              ++ P    PT P+ P    PTT   P++  PT P+   P  PE   P  PE P PT P 
Sbjct:   596 TTKKPA---PTTPKEPA---PTT---PKETAPTTPKKLTPTTPEKLAPTTPEKPAPTTP- 645

Query:   378 LPEVLEPTKLQLPEDPEPTKPQ--LPEDPETTKPQLPEVPEPTKLQLPEVPEPTKPELPE 435
               E L PT    PE+P PT P+   P  P+   P  P+ P PT    P+ P PT P+ P 
Sbjct:   646 --EELAPTT---PEEPTPTTPEEPAPTTPKAAAPNTPKEPAPTT---PKEPAPTTPKEP- 696

Query:   436 VPELTKTQLPEVPEPTKPQILDKKEPVLLDKKEP 469
              P   K   P  P+ T P  L  KEP     K+P
Sbjct:   697 APTTPKETAPTTPKGTAPTTL--KEPAPTTPKKP 728

GO:0005044 "scavenger receptor activity" evidence=IEA

GO:0006955 "immune response" evidence=IEA

GO:0030247 "polysaccharide binding" evidence=IEA

GO:0005576 "extracellular region" evidence=IEA

GO:0008283 "cell proliferation" evidence=TAS

UNIPROTKB|G3MYM8 G3MYM8 "Uncharacterized protein" [Bos taurus (taxid:9913)]

 Score = 263 (97.6 bits), Expect = 9.7e-19, P = 9.7e-19
 Identities = 120/442 (27%), Positives = 169/442 (38%)

Query:    44 DITVPTNIYNVQCFSSTTVEHSRRPKNTQLHQDSSHGNILETKPPNLLQQNKSHENIPEN 103
             +IT   ++   Q  SS++   S   +  +  ++S+    L+ KP   ++  K  +  P+N
Sbjct:   152 EITEEHSVSENQESSSSSSSSSSTIRKIKSSKNSAANRELKKKPK--VKDKK--KRTPKN 207

Query:   104 SETPTPNL---DGTGQLNDNNKSV----IKWFLENVECLLDYLVQQKETANVNSADLVNN 156
               TP P +   DG+G  N + K      I     N       +   K T  +    L  N
Sbjct:   208 KPTPEPPVIDEDGSGLDNGDFKLTPTPNIPTTQRNKVTTTPKITTVKPT--LPKPSLPPN 265

Query:   157 RENVVKPVERKDGKETTEKETGKIAXXXXXXXXXXXXFAKLADSETNPTEVAERTAPESS 216
              +   K +     +ETT  ET + +             AK   +    T  AE T+ +  
Sbjct:   266 SDTT-KEIPSTVNRETTV-ETKETSTTNKPTSTS----AKEKTTSAKETRTAENTSTKGL 319

Query:   217 KRTDSKEDIENRVDNNDGTIATDEALKAIESQRRVKRRAAKTRDKIKENIDPELGNLSDL 276
               T     I            T    K  E     K  A  T  K   +  P+    +  
Sbjct:   320 APTPEVPAISTPKAETITRSPTPTTPK--EPAPTTKEPALTTTTKEPASTTPKKPAPTTP 377

Query:   277 NEDLKKPGEPEVQTPIVPEPT--KQELPEVPETTKPQLPEVPEPT-KSQLPEVPEPTKPQ 333
              E      EPE  T   PEPT  KQ  P  P+   P  P+   PT K   P  P+   P 
Sbjct:   378 KETAPTTKEPEPTTK-EPEPTTPKQPAPTTPKEPAPTTPKETAPTTKEPAPTTPKEPAPT 436

Query:   334 LPEVLEPTTLQLPEDPEPTKPQLPEDPEPTKPQLPEVPEPTKPQLPEVLEPTKLQLPEDP 393
              P+   PTT +   +P PT P+ P    P +P+ P  P+   P  P+  EPT    P++P
Sbjct:   437 TPKEPAPTTTK---EPAPTTPKEPAPTTPKEPESPTTPKEPAPTTPK--EPTPTT-PKEP 490

Query:   394 EPTKPQLPEDPETTKPQLPEVP-EPTKLQLPEVPEPT--KPELPEVPELTKTQLPEVPEP 450
              PT P+ P  P T K   P  P EP     P+ P PT  +PE P   E   T   + P P
Sbjct:   491 APTTPKEPA-PTTPKEPTPTTPKEPAPTTTPKEPAPTTKEPE-PTTKEPAPTTTTKEPAP 548

Query:   451 T---KPQILDKKEPVLLDKKEP 469
             T   +P     KEP     KEP
Sbjct:   549 TIPKEPAPTTPKEPAPTTHKEP 570

GO:0030247 "polysaccharide binding" evidence=IEA

GO:0006955 "immune response" evidence=IEA

GO:0005044 "scavenger receptor activity" evidence=IEA

UNIPROTKB|F1N757 F1N757 "Uncharacterized protein" [Bos taurus (taxid:9913)]

 Score = 258 (95.9 bits), Expect = 1.4e-19, Sum P(3) = 1.4e-19
 Identities = 80/213 (37%), Positives = 110/213 (51%)

Query:   283 PGEPEVQTPIVPEPTKQELPE--VPETTKPQLPEVPEPTKSQLPEVPEPTKPQ--LPEVL 338
             P +PEV    VPE  K+ +PE  VP    P+ PEVP P K  +PEVP+   P+  +PE +
Sbjct: 11451 PKKPEVPPVTVPEAPKEVVPEKKVP-VVPPKKPEVP-PAK--VPEVPKAAVPEKKVPEAI 11506

Query:   339 EPTTLQLPEDPEPTKPQLPED--PE-------PTKPQLP--EVPEPTKPQLPE----VLE 383
              P     PE P P  P+ P++  PE       P KP++P  +VPE  K  +PE    V+ 
Sbjct: 11507 PPK----PESPPPAVPEAPKEVVPEKKVPVMPPKKPEVPPAKVPEAPKEVVPEKKVPVMP 11562

Query:   384 PTKLQLP--EDPEPTKPQLPED--PETTKPQLPEVPEPTKLQLPEVPEPTKP--ELPEVP 437
             P K ++P  + PE  K  +PE   PE   P+ PE P P   + PE   P +P  E+ E P
Sbjct: 11563 PKKPEVPPAKVPEVPKAAVPEKKVPEAIPPK-PESPPPAVYEEPEEIAPEEPPVEVVEEP 11621

Query:   438 ELTKTQLPEVPEPTKPQILDKKEPVLLDKK-EP 469
             E      P+V  P K  + +KK P ++ KK EP
Sbjct: 11622 EPVPAPPPKVTVPPKKPVPEKKPPAVVAKKPEP 11654

GO:0060048 "cardiac muscle contraction" evidence=IEA

GO:0055008 "cardiac muscle tissue morphogenesis" evidence=IEA

GO:0055003 "cardiac myofibril assembly" evidence=IEA

GO:0051592 "response to calcium ion" evidence=IEA

GO:0051371 "muscle alpha-actinin binding" evidence=IEA

GO:0051015 "actin filament binding" evidence=IEA

GO:0048769 "sarcomerogenesis" evidence=IEA

GO:0048739 "cardiac muscle fiber development" evidence=IEA

GO:0045859 "regulation of protein kinase activity" evidence=IEA

GO:0045214 "sarcomere organization" evidence=IEA

GO:0043621 "protein self-association" evidence=IEA

GO:0043056 "forward locomotion" evidence=IEA

GO:0042802 "identical protein binding" evidence=IEA

GO:0031430 "M band" evidence=IEA

GO:0030241 "skeletal muscle myosin thick filament assembly" evidence=IEA

GO:0030240 "skeletal muscle thin filament assembly" evidence=IEA

GO:0030018 "Z disc" evidence=IEA

GO:0008307 "structural constituent of muscle" evidence=IEA

GO:0007512 "adult heart development" evidence=IEA

GO:0007076 "mitotic chromosome condensation" evidence=IEA

GO:0005865 "striated muscle thin filament" evidence=IEA

GO:0005794 "Golgi apparatus" evidence=IEA

GO:0005509 "calcium ion binding" evidence=IEA

GO:0004674 "protein serine/threonine kinase activity" evidence=IEA

GO:0003300 "cardiac muscle hypertrophy" evidence=IEA

GO:0002020 "protease binding" evidence=IEA

GO:0001701 "in utero embryonic development" evidence=IEA

GO:0000794 "condensed nuclear chromosome" evidence=IEA

GO:0035023 "regulation of Rho protein signal transduction" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

GO:0005089 "Rho guanyl-nucleotide exchange factor activity" evidence=IEA

GO:0004713 "protein tyrosine kinase activity" evidence=IEA

GO:0003676 "nucleic acid binding" evidence=IEA

RGD|1308976 Prg4 "proteoglycan 4, (megakaryocyte stimulating factor, articular superficial zone protein, camptodactyly, arthropathy, coxa vara, pericarditis syndrome)" [Rattus norvegicus (taxid:10116)]

 Score = 310 (114.2 bits), Expect = 6.5e-24, P = 6.5e-24
 Identities = 93/294 (31%), Positives = 136/294 (46%)

Query:   195 AKLADSETNP-TEVAERTAPESSKRTDSKEDIENRVDNNDGTIATDEALKAIESQRRVKR 253
             +K A S +N  T V  +   E++K++ + +  E      +   A + + K +E      +
Sbjct:   178 SKEASSTSNKETTVETKETTETNKQSSASKK-EKTTSAKETRSAENTSAKDVEPTSTTPK 236

Query:   254 RAAKTRDK--IKENIDPELGNLSDLNEDLKKPG-----EPEVQTPIVPEPT-KQELPEVP 305
              +A T  K  +    +P            K+P      EPE+  P  P PT K+  P  P
Sbjct:   237 NSAPTTTKKPVTTTKEPVPTTTKGPEPTSKEPAPTTPKEPELTIPKEPAPTTKKPAPTTP 296

Query:   306 ETTKPQLPEVPEPTKSQLPEVPEPTKPQLPEVLEPTT-LQLPEDPEPTKPQLP-----ED 359
             +   P  P+ P PT    P+ P PT P+ P +  P      P++PEPT P+ P     ++
Sbjct:   297 KEPAPTTPKEPAPTT---PKEPAPTTPKEPALTTPKEPAPTPKEPEPTTPKEPAPTTRKE 353

Query:   360 PEPTKPQLPEVPEPTKPQLPEVLEPTKLQLPEDPEPTKPQLPEDPETTKPQLPEVPEPTK 419
             P PT P+ P  P   KP+L    EP     P++P PT P+ P    T KP+L    EPT 
Sbjct:   354 PAPTTPKEP-APTTKKPELTIPKEPVPTT-PKEPAPTTPKEPAPTTTKKPELSTPKEPTS 411

Query:   420 LQLPEVPEPTKPELPEVPELTKTQLPEVPEPTKPQILDKKEPVLLDKKEPVLLD 473
                P+ PEPT   LP+ PELT   LPE PEP+ P+  D+    L +   P  L+
Sbjct:   412 TN-PKEPEPT---LPKEPELT---LPEEPEPSNPETSDELIAELAEAPTPKALE 458

GO:0005044 "scavenger receptor activity" evidence=IEA

GO:0006955 "immune response" evidence=IEA

GO:0030247 "polysaccharide binding" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database

ID	Length	Definition	E-value
Query	1235
PHA03247	3151	PHA03247, PHA03247, large tegument protein UL36; P	1e-18
PHA03247	3151	PHA03247, PHA03247, large tegument protein UL36; P	5e-14
PHA03247	3151	PHA03247, PHA03247, large tegument protein UL36; P	5e-14
PHA03247	3151	PHA03247, PHA03247, large tegument protein UL36; P	3e-11
PTZ00465	565	PTZ00465, PTZ00465, rhoptry-associated protein 1 (	8e-11
PHA03378	991	PHA03378, PHA03378, EBNA-3B; Provisional	2e-08
pfam00577	552	pfam00577, Usher, Type VII secretion system (T7SS)	3e-07
PRK15313	955	PRK15313, PRK15313, autotransport protein MisL; Pr	6e-07
pfam03154	979	pfam03154, Atrophin-1, Atrophin-1 family	3e-06
PRK10263	1355	PRK10263, PRK10263, DNA translocase FtsK; Provisio	4e-06
PHA03378	991	PHA03378, PHA03378, EBNA-3B; Provisional	5e-06
PRK10263	1355	PRK10263, PRK10263, DNA translocase FtsK; Provisio	1e-05
PRK10263	1355	PRK10263, PRK10263, DNA translocase FtsK; Provisio	1e-05
PRK14950	585	PRK14950, PRK14950, DNA polymerase III subunits ga	1e-05
PRK10811	1068	PRK10811, rne, ribonuclease E; Reviewed	1e-05
pfam05887	145	pfam05887, Trypan_PARP, Procyclic acidic repetitiv	1e-05
PRK15313	955	PRK15313, PRK15313, autotransport protein MisL; Pr	2e-05
PHA03307	1352	PHA03307, PHA03307, transcriptional regulator ICP4	2e-05
PRK14950	585	PRK14950, PRK14950, DNA polymerase III subunits ga	3e-05
PRK07994	647	PRK07994, PRK07994, DNA polymerase III subunits ga	3e-05
PRK07994	647	PRK07994, PRK07994, DNA polymerase III subunits ga	3e-05
PRK14950	585	PRK14950, PRK14950, DNA polymerase III subunits ga	4e-05
PRK14950	585	PRK14950, PRK14950, DNA polymerase III subunits ga	5e-05
pfam11912	204	pfam11912, DUF3430, Protein of unknown function (D	6e-05
PRK03427	333	PRK03427, PRK03427, cell division protein ZipA; Pr	6e-05
COG3087	264	COG3087, FtsN, Cell division protein [Cell divisio	9e-05
pfam03154	979	pfam03154, Atrophin-1, Atrophin-1 family	1e-04
pfam05887	145	pfam05887, Trypan_PARP, Procyclic acidic repetitiv	1e-04
PLN03209	576	PLN03209, PLN03209, translocon at the inner envelo	1e-04
PRK14950	585	PRK14950, PRK14950, DNA polymerase III subunits ga	2e-04
PHA03307	1352	PHA03307, PHA03307, transcriptional regulator ICP4	2e-04
PRK10819	246	PRK10819, PRK10819, transport protein TonB; Provis	2e-04
pfam00577	552	pfam00577, Usher, Type VII secretion system (T7SS)	3e-04
PRK10811	1068	PRK10811, rne, ribonuclease E; Reviewed	3e-04
PRK10819	246	PRK10819, PRK10819, transport protein TonB; Provis	3e-04
PRK10819	246	PRK10819, PRK10819, transport protein TonB; Provis	3e-04
PRK10819	246	PRK10819, PRK10819, transport protein TonB; Provis	3e-04
PRK15313	955	PRK15313, PRK15313, autotransport protein MisL; Pr	4e-04
PRK14950	585	PRK14950, PRK14950, DNA polymerase III subunits ga	4e-04
COG5263	313	COG5263, COG5263, FOG: Glucan-binding domain (YG r	4e-04
PRK10263	1355	PRK10263, PRK10263, DNA translocase FtsK; Provisio	6e-04
PRK14950	585	PRK14950, PRK14950, DNA polymerase III subunits ga	9e-04
PRK10263	1355	PRK10263, PRK10263, DNA translocase FtsK; Provisio	0.001
PRK14950	585	PRK14950, PRK14950, DNA polymerase III subunits ga	0.001
PRK10811	1068	PRK10811, rne, ribonuclease E; Reviewed	0.001
pfam05887	145	pfam05887, Trypan_PARP, Procyclic acidic repetitiv	0.001
pfam05887	145	pfam05887, Trypan_PARP, Procyclic acidic repetitiv	0.001
PHA03307	1352	PHA03307, PHA03307, transcriptional regulator ICP4	0.001
PRK07994	647	PRK07994, PRK07994, DNA polymerase III subunits ga	0.001
PRK14951	618	PRK14951, PRK14951, DNA polymerase III subunits ga	0.001
pfam03154	979	pfam03154, Atrophin-1, Atrophin-1 family	0.002
PRK03427	333	PRK03427, PRK03427, cell division protein ZipA; Pr	0.002
PRK12323	700	PRK12323, PRK12323, DNA polymerase III subunits ga	0.002
PRK11633	226	PRK11633, PRK11633, cell division protein DedD; Pr	0.002
PRK14971	614	PRK14971, PRK14971, DNA polymerase III subunits ga	0.002
pfam05887	145	pfam05887, Trypan_PARP, Procyclic acidic repetitiv	0.003
pfam05887	145	pfam05887, Trypan_PARP, Procyclic acidic repetitiv	0.003
PRK10819	246	PRK10819, PRK10819, transport protein TonB; Provis	0.003
PRK14951	618	PRK14951, PRK14951, DNA polymerase III subunits ga	0.003
PRK12323	700	PRK12323, PRK12323, DNA polymerase III subunits ga	0.003
PRK11633	226	PRK11633, PRK11633, cell division protein DedD; Pr	0.003
PRK14950	585	PRK14950, PRK14950, DNA polymerase III subunits ga	0.004
pfam05887	145	pfam05887, Trypan_PARP, Procyclic acidic repetitiv	0.004
pfam11912	204	pfam11912, DUF3430, Protein of unknown function (D	0.004
PRK12323	700	PRK12323, PRK12323, DNA polymerase III subunits ga	0.004
PRK11633	226	PRK11633, PRK11633, cell division protein DedD; Pr	0.004
TIGR04056	982	TIGR04056, OMP_RagA_SusC, TonB-linked outer membra	0.004
pfam05297	382	pfam05297, Herpes_LMP1, Herpesvirus latent membran	0.004
PTZ00449	943	PTZ00449, PTZ00449, 104 kDa microneme/rhoptry anti	0.004

>gnl|CDD|223021 PHA03247, PHA03247, large tegument protein UL36; Provisional

 Score = 92.3 bits (229), Expect = 1e-18
 Identities = 99/470 (21%), Positives = 134/470 (28%), Gaps = 76/470 (16%)

Query: 282  KPGEPEVQT----PIVP-EPTKQELPEVPETTKP-QLPEVPEPTKSQLPEVPEPT-KPQL 334
            +P EP V +    P  P +  +   P           P  P P  +  P+ P P+  P  
Sbjct: 2576 RPSEPAVTSRARRPDAPPQSARPRAPVDDRGDPRGPAPPSPLPPDTHAPDPPPPSPSPAA 2635

Query: 335  PEVLEPTTLQLPEDPEPTKPQLP-------EDPEPTKPQLPEVP--EPTKPQLPEVLEP- 384
             E        +P    P     P             +      P   P +      +   
Sbjct: 2636 NEPDPHPPPTVPPPERPRDDPAPGRVSRPRRARRLGRAAQASSPPQRPRRRAARPTVGSL 2695

Query: 385  TKLQLPEDPEPTKPQLPED-PETTKPQLPEVPEPTKLQLPEVPEPTKPELPEVPELTKTQ 443
            T L  P  P PT    PE  P       P  P P   +      P  P  P VP    T 
Sbjct: 2696 TSLADPPPPPPT----PEPAPHALVSATPLPPGPAAARQASPALPAAPAPPAVPAGPATP 2751

Query: 444  LPEVPEPTKPQILDKKEPVLLDKKEPVLLDKKEPVLPPKPEPEILLPPKPEPELL----L 499
                     P       P               P  P    P  L  P           L
Sbjct: 2752 GGPARPARPPTTAGPPAPA-------------PPAAPAAGPPRRLTRPAVASLSESRESL 2798

Query: 500  PPKPEPELLLPPKLEPKLLLPPKSEPELLLPPKPEPELLLPPKPKPELLL---------- 549
            P   +P       L P   LPP + P   LPP    +   PP P                
Sbjct: 2799 PSPWDPADPPAAVLAPAAALPPAASPAGPLPPPTSAQPTAPPPPPGPPPPSLPLGGSVAP 2858

Query: 550  --------PPKPEPEKLLLPPKPKPKLLLPPKPESELLLPPKPEPELIIPPKPEPEILIP 601
                    P +    K   P +P  + L  P              E    P  +PE    
Sbjct: 2859 GGDVRRRPPSRSPAAKPAAPARPPVRRLARP--------AVSRSTESFALPPDQPE---- 2906

Query: 602  PKPEPELLLPPKPEPEILLPPKPEPELLLPPKPEPEILLPPKPEPELL-----LPPKPES 656
              P+P+   PP+P+P+   PP+P+P    PP+P+P   L P  +P          P+P  
Sbjct: 2907 RPPQPQAPPPPQPQPQPPPPPQPQPPPPPPPRPQPP--LAPTTDPAGAGEPSGAVPQPWL 2964

Query: 657  ELLLPLKPEPEILLPPKPEPELLLPPKPEPELLLPPKPETITTTKTLLLD 706
              L+P +        P+P P    P    P L         +   +L L 
Sbjct: 2965 GALVPGRVAVPRFRVPQPAPSREAPASSTPPLTGHSLSRVSSWASSLALH 3014

Length = 3151

>gnl|CDD|223021 PHA03247, PHA03247, large tegument protein UL36; Provisional

 Score = 77.3 bits (190), Expect = 5e-14
 Identities = 105/441 (23%), Positives = 142/441 (32%), Gaps = 76/441 (17%)

Query: 327  PEPTKPQLPEVLEPTTLQLPEDPEPTKPQL--------------PEDPEPTKPQLPEVPE 372
            P+P  P  P  L P  L      EP  P++                DP P  P       
Sbjct: 2504 PDPDAPPAPSRLAPAILPDEPVGEPVHPRMLTWIRGLEELASDDAGDPPPPLPPAAPPAA 2563

Query: 373  PTK--------PQLPEVLEPTKLQLPE-DPEPTKPQLPEDPETTKP-QLPEVPEPTKLQL 422
            P +        P+  E    ++ + P+  P+  +P+ P D         P  P P     
Sbjct: 2564 PDRSVPPPRPAPRPSEPAVTSRARRPDAPPQSARPRAPVDDRGDPRGPAPPSPLPPDTHA 2623

Query: 423  PEVPEPTKPELPEVPELTKTQLPEVPEPTKPQILDKKEPVLLDKKEPVLLDKKEPVLPPK 482
            P+ P P+    P   E      P VP P +P+       V   ++   L    +   PP+
Sbjct: 2624 PDPPPPSPS--PAANEPDPHPPPTVPPPERPRDDPAPGRVSRPRRARRLGRAAQASSPPQ 2681

Query: 483  -PEPEILLPP-KPEPELLLPPKPEPE-LLLPPKLEPKLLLPP------KSEPELLLPPKP 533
             P      P       L  PP P P     P  L     LPP      ++ P L   P P
Sbjct: 2682 RPRRRAARPTVGSLTSLADPPPPPPTPEPAPHALVSATPLPPGPAAARQASPALPAAPAP 2741

Query: 534  EPELLLPPKP--------KPELLLPPKPEPEKLLLPPKPKPKLLLPPK----PESELLLP 581
                  P  P         P    PP P P     P    P+ L  P      ES   LP
Sbjct: 2742 PAVPAGPATPGGPARPARPPTTAGPPAPAPPA--APAAGPPRRLTRPAVASLSESRESLP 2799

Query: 582  PKPEPELIIPPKPEPEILIPPKPEPELLLPPKPEPEILLPPKP----EPELLL------- 630
               +P         P   +PP   P   LPP    +   PP P     P L L       
Sbjct: 2800 SPWDPADPPAAVLAPAAALPPAASPAGPLPPPTSAQPTAPPPPPGPPPPSLPLGGSVAPG 2859

Query: 631  ------------PPKPEPEILLPPKPEPELLLPPKPESELLLPLKPE----PEILLPPKP 674
                          KP      P +      +    ES  L P +PE    P+   PP+P
Sbjct: 2860 GDVRRRPPSRSPAAKPAAPARPPVRRLARPAVSRSTESFALPPDQPERPPQPQAPPPPQP 2919

Query: 675  EPELLLPPKPEPELLLPPKPE 695
            +P+   PP+P+P    PP+P+
Sbjct: 2920 QPQPPPPPQPQPPPPPPPRPQ 2940

Length = 3151

>gnl|CDD|223021 PHA03247, PHA03247, large tegument protein UL36; Provisional

 Score = 77.3 bits (190), Expect = 5e-14
 Identities = 101/516 (19%), Positives = 135/516 (26%), Gaps = 59/516 (11%)

Query: 251  VKRRAAKTRDKIKENIDPELGNLSDLNEDLKKPGEPEVQTP-IVP-EPTKQELPEVPETT 308
            V RR A+ R        P+ G       D   P  P    P I+P EP  + +     T 
Sbjct: 2479 VYRRPAEARFPFAAGAAPDPGGGGP--PDPDAPPAPSRLAPAILPDEPVGEPVHPRMLTW 2536

Query: 309  KPQLPEV-PEPTKSQLPEVPEPTKPQLPEVLEPTTLQLPEDPEP------TKPQLPEDPE 361
               L E+  +      P +P    P  P+   P     P   EP       +P  P  P+
Sbjct: 2537 IRGLEELASDDAGDPPPPLPPAAPPAAPDRSVPPPRPAPRPSEPAVTSRARRPDAP--PQ 2594

Query: 362  PTKPQLPEVPEPTKPQLPEVLEPTKLQLPEDPEPTKPQLPEDPETTKPQLPEVPEPTKLQ 421
              +P+ P                     P    P        P +  P   E        
Sbjct: 2595 SARPRAPVDDRGDPRGPAP---------PSPLPPDTHAPDPPPPSPSPAANEPDPHPPPT 2645

Query: 422  LPEVPEPTK-PELPEVPELTKTQLPEVPEPTKPQILDKKEPVLLDKKEPVLLDKKEPVLP 480
            +P    P   P    V    + +               +          +      P  P
Sbjct: 2646 VPPPERPRDDPAPGRVSRPRRARRLGRAAQASSPPQRPRRRAARPTVGSLTSLADPPPPP 2705

Query: 481  PKPEPEILLPPKPEPELLLPPKPEPELLLPPKLE--------------PKLLLPPKSEPE 526
            P PEP    P        LPP P       P L               P     P   P 
Sbjct: 2706 PTPEPA---PHALVSATPLPPGPAAARQASPALPAAPAPPAVPAGPATPGGPARPARPPT 2762

Query: 527  LLLPPKPEPELLLPPKPKPELLLPP----KPEPEKLLLPPKPKPKLLLPPKPESELLLPP 582
               PP P P       P   L  P         E L  P  P         P + L    
Sbjct: 2763 TAGPPAPAPPAAPAAGPPRRLTRPAVASLSESRESLPSPWDPADPPAAVLAPAAALPPAA 2822

Query: 583  KPEPELIIPPKPEPEILIPPKPEPELLLPP-----------KPEPEILLPPKPEPELLLP 631
             P   L  P   +P    PP   P   LP            +  P      KP      P
Sbjct: 2823 SPAGPLPPPTSAQPTAPPPPPGPPPPSLPLGGSVAPGGDVRRRPPSRSPAAKPAAPARPP 2882

Query: 632  PKPEPEILLPPKPEPELLLPPKPESELLLPLKPEPEILLPPKPEPELLLPPKPEPELLLP 691
             +      +    E   L P +PE        P P+    P+P+P     P+P P     
Sbjct: 2883 VRRLARPAVSRSTESFALPPDQPERPPQPQAPPPPQ----PQPQPPPPPQPQPPPPPPPR 2938

Query: 692  PKPETITTTKTLLLDKKEPVLLDKKEPVLLDKKEPV 727
            P+P    TT      +    +       L+  +  V
Sbjct: 2939 PQPPLAPTTDPAGAGEPSGAVPQPWLGALVPGRVAV 2974

Length = 3151

>gnl|CDD|223021 PHA03247, PHA03247, large tegument protein UL36; Provisional

 Score = 68.0 bits (166), Expect = 3e-11
 Identities = 82/385 (21%), Positives = 109/385 (28%), Gaps = 35/385 (9%)

Query: 340  PTTLQLPEDPEPTKPQLPEDPEPTKPQLPEVPEPTKPQLPEVLEPTKLQLPEDPEPTKPQ 399
            P   +  E   P       DP    P     P+P  P  P  L P  L      EP  P+
Sbjct: 2478 PVYRRPAEARFPFAAGAAPDPGGGGP-----PDPDAPPAPSRLAPAILPDEPVGEPVHPR 2532

Query: 400  L-----------PEDPETTKPQLPEVPEPTKLQLPEVPEPTKPELPEVPELTKTQLPEVP 448
            +            +D     P LP    P        P    P   E    ++ + P+ P
Sbjct: 2533 MLTWIRGLEELASDDAGDPPPPLPPAAPPAAPDRSVPPPRPAPRPSEPAVTSRARRPDAP 2592

Query: 449  -EPTKPQ--ILDKKEPVLLDKKEPVLLDKKEPVLPP-KPEPEILLPPKPEPELLLPPKPE 504
             +  +P+  + D+ +P       P+  D   P  PP  P P    P    P  + PP+  
Sbjct: 2593 PQSARPRAPVDDRGDPRGPAPPSPLPPDTHAPDPPPPSPSPAANEPDPHPPPTVPPPERP 2652

Query: 505  PELLLPPKLEPKLLLPPKSEPELLLPP--KPEPELLLPP-KPKPELLLPPKPEPEKLLLP 561
             +   P ++                 P  +P      P       L  PP P P     P
Sbjct: 2653 RDDPAPGRVSRPRRARRLGRAAQASSPPQRPRRRAARPTVGSLTSLADPPPPPPTPEPAP 2712

Query: 562  PKPKPKLLLPPKPESELLLPPKPEPELIIPPKPE----PEILIPPKPEPELLLPPKPEPE 617
                    LPP P +     P        P  P     P     P   P    PP P P 
Sbjct: 2713 HALVSATPLPPGPAAARQASPALPAAPAPPAVPAGPATPGGPARPARPPTTAGPPAPAPP 2772

Query: 618  ILLPPKPEPELLLP---PKPEPEILLPPKPEPELLLPPKPESELLLPLKPEPEILLPPKP 674
                  P   L  P      E    LP   +P             LP    P   LPP  
Sbjct: 2773 AAPAAGPPRRLTRPAVASLSESRESLPSPWDPADPPAAVLAPAAALPPAASPAGPLPPPT 2832

Query: 675  EPELLLPPKPEPELLLPPKPETITT 699
              +   PP P       P P ++  
Sbjct: 2833 SAQPTAPPPPP-----GPPPPSLPL 2852

Length = 3151

>gnl|CDD|185644 PTZ00465, PTZ00465, rhoptry-associated protein 1 (RAP-1); Provisional

 Score = 65.9 bits (160), Expect = 8e-11
 Identities = 65/170 (38%), Positives = 87/170 (51%), Gaps = 7/170 (4%)

Query: 293 VPEPTKQELPEVPETTKPQL-PEVPEPTKSQLPEVPEPTKPQLPE-VLEPTTLQLPEDPE 350
           V +PTK+ + +  E TK  L   V EPTK  + +  E TK  L E V EPT     E P+
Sbjct: 314 VTQPTKKFIEDTNEVTKNYLKANVAEPTKKFMQDTHEKTKGYLKENVAEPTKTFFKEAPQ 373

Query: 351 PTKPQLPED-PEPTKPQLPEVPEPTKPQLPE-VLEPTKLQLPEDPEPTKPQLPED-PETT 407
            TK    E+  +PTK    E P+ TK  L E + +PTK    E P+ TK  L E+  + T
Sbjct: 374 VTKHFFDENIGQPTKEFFREAPQATKHFLDENIGQPTKEFFREAPQVTKHFLDENIAQPT 433

Query: 408 KPQLPEVPEPTKLQLPE-VPEPTKPELPEVPELTKTQLPE-VPEPTKPQI 455
           K    +VP+ TK  + E + +PTK  L EVP  T   L E + +P K  I
Sbjct: 434 KEFFRDVPQVTKKVITENIAQPTKEFLKEVPHTTMKVLNENIAQPAKEII 483

Length = 565

>gnl|CDD|223065 PHA03378, PHA03378, EBNA-3B; Provisional

 Score = 58.5 bits (141), Expect = 2e-08
 Identities = 78/332 (23%), Positives = 106/332 (31%), Gaps = 27/332 (8%)

Query: 346 PEDPEPTKPQLPEDPEPTKPQLPEVPEPTKPQLPEVLEPTKLQLPEDPEPTKPQLPEDPE 405
           P   EP   QL   P     Q+  +  PT  QL     P+  Q P  P P   Q PE P 
Sbjct: 553 PASTEPVHDQLLPAPGLGPLQIQPLTSPTTSQLASSA-PSYAQTP-WPVPHPSQTPEPP- 609

Query: 406 TTKPQLPEVPEPTKLQLPEVPEPTKPELPEVPELTKTQLPEVPEPTKPQILDKKEPVLLD 465
           TT+  +PE   P +  +P  P P +P   +         P   +P + +I   K      
Sbjct: 610 TTQSHIPETSAPRQWPMPLRPIPMRPLRMQPITFNVLVFPTPHQPPQVEITPYKPTWT-- 667

Query: 466 KKEPVLLDKKEPVLPPKPEPEILLPPKPEPELLLPPKPEPELLLPPKLEPKLLLPPKSEP 525
                    +   +P +P P            +LP +  P  + PP   P  + PP + P
Sbjct: 668 ---------QIGHIPYQPSPT-------GANTMLPIQWAPGTMQPPPRAPTPMRPPAAPP 711

Query: 526 ELLLPPKPEPELLLPPKPKPELLLPPKPEPEKLLLPPKPKPKLLLPPKPESELLLPPKPE 585
                P        PP   P    PP   P +   PP   P    PP        PP   
Sbjct: 712 GRAQRPAAATGRARPPAAAPGRARPPAAAPGRAR-PPAAAPGRARPPAAAPGRARPPAAA 770

Query: 586 PELIIPPKPEPEILIPPKPEPELLLPPKPEPEILLPPKPEPELLLPPKPEPEILLPPKPE 645
           P     P P+P    PP P+      P P+P     P      L+P     +     +  
Sbjct: 771 PG---APTPQPPPQAPPAPQQRPRGAPTPQPPPQAGPTSM--QLMPRAAPGQQGPTKQIL 825

Query: 646 PELLLPPKPESELLLPLKPEPEILLPPKPEPE 677
            +LL          L      E      P P 
Sbjct: 826 RQLLTGGVKRGRPSLKKPAALERQAAAGPTPS 857

Length = 991

>gnl|CDD|216001 pfam00577, Usher, Type VII secretion system (T7SS), usher protein

 Score = 54.2 bits (131), Expect = 3e-07
 Identities = 45/277 (16%), Positives = 83/277 (29%), Gaps = 58/277 (20%)

Query: 968  NSELVYKDKY----TGVG---GYFGAVPEIGQ-------NYYFHQNQSQNYYYHQNLSQN 1013
               L   D Y     GVG   G  GA+            N   H  QS    Y ++L + 
Sbjct: 201  YGGLQLADDYQAAALGVGLNLGDLGALSVDVTQSRSKLDNQSSHNGQSYRLSYSKSLDE- 259

Query: 1014 YYYHQNLSLKYYCRRNLSQNYYCHQNQSPNNYYYHLNLSQNYYFHQNQSQNYYYHQNLSQ 1073
                 N +L  Y  R  S+ YY     + +++    N   N  + +   + Y     LSQ
Sbjct: 260  --TGTNFTLAGY--RYSSRGYY-----TLSDFLDTRNSGYNLRYRKKNKERY--QLTLSQ 308

Query: 1074 NYYYHQNLSLKYYCRRNLSQNYYCHQNQSQNY---YYHQNQSQNYY--YHQNQSQKYYYH 1128
            +     +L L         Q Y+   N S +    Y       +    +  +++      
Sbjct: 309  SLGGWGSLYLSGS-----RQTYWGDDNTSTSLQVGYNFNIGRVSVSLNWSYSRNAGSNNR 363

Query: 1129 Q-----NLS-------QNYYYHQNLSQNYYCHQNQSQNYYYHQNQSQKYYYHQNLSQNCY 1176
                  N+S          Y   + S++       +        +  +  Y   ++    
Sbjct: 364  DDSLSLNISIPLGRLDGRAYSTYSYSRSNNGGTTSNTGVSGSLFEDDRLSY--GVNAG-R 420

Query: 1177 YHQNRSQN---YYYHQ----NLSQNYYYHQNQSQKNY 1206
                +  +      ++     LS +Y Y ++  Q   
Sbjct: 421  SSDGKESSGSLNLSYRGDYGELSGSYSYSRDYRQLGA 457

The chaperone-usher (CU) pathway or Type VII secretion system (T7SS) in Gram-negative (diderm) bacteria is responsible for the secretion and assembly of prepilins for fimbriae biogenesis, the prototypical Type 1 pili. Following the prepilins export to the periplasm by the Sec translocon, the biogenesis of fimbriae requires a two-component assembly and transport system which is composed of a periplasmic chaperone and an outer membrane protein, which has been termed a molecular 'usher'. The usher protein is rather large (from 86 to 100 Kd) and seems to be mainly composed of membrane-spanning beta-sheets, a structure reminiscent of porins. Although the degree of sequence similarity of these proteins is not very high they share a number of characteristics. One of these is the presence of two pairs of cysteines, the first one located in the N-terminal part and the second at the C-terminal extremity that are probably involved in disulphide bonds. The best conserved region is located in the central part of these proteins. Length = 552

>gnl|CDD|237940 PRK15313, PRK15313, autotransport protein MisL; Provisional

 Score = 53.6 bits (128), Expect = 6e-07
 Identities = 29/87 (33%), Positives = 47/87 (54%), Gaps = 9/87 (10%)

Query: 364 KPQLPEVPEPTKPQLPEVLEPTKLQLPEDPEPTKPQLPEDPETTKPQLPEVPEPTKLQLP 423
           +P  P +P+P  P +P+ + P     P DP+P  P +P DP    P  P+  +P  +  P
Sbjct: 559 EPDEPIIPDPVDPVIPDPVIPD----PVDPDPVDPVIP-DPVIPDPVDPDPVDPEPVD-P 612

Query: 424 EVPEPTKPEL--PEVPELTKTQL-PEV 447
            +P+PT P++   + P +T+ Q  PEV
Sbjct: 613 VIPDPTIPDIGQSDTPPITEHQFRPEV 639

Length = 955

>gnl|CDD|217393 pfam03154, Atrophin-1, Atrophin-1 family

 Score = 51.2 bits (122), Expect = 3e-06
 Identities = 71/348 (20%), Positives = 101/348 (29%), Gaps = 8/348 (2%)

Query: 354 PQLPEDPEPTKPQLPEVPEPTKPQLPEVLEPTKLQLPEDPEPTKPQLPEDPETTKPQ-LP 412
           P +   P          P P+   +P    P   Q    P+   P       +  PQ LP
Sbjct: 179 PSIQVPPGAALAPSAPPPTPSAQAVPPQGSPIAAQPAPQPQQPSPLSLISAPSLHPQRLP 238

Query: 413 EVPEPTKLQLPEVPEPTKPELPEVPELTK--TQLPEVPEPTKPQILDKKEPVLLDKKEPV 470
               P + Q      P  P        +      P +P   +   +  + P     +   
Sbjct: 239 SPHPPLQPQTASQQSPQPPAPSSRHPQSSHHGPGPPMPHALQQGPVFLQHPSSNPPQPFG 298

Query: 471 LLDKKEPVLPPKPEPEILLPPKPEPELLLPPKPEPELLLPPKLEPKLLLPPKSEPELLLP 530
           L   + P LP   + +      P    L P +P  E  LPP      + PP + P   LP
Sbjct: 299 LAQSQVPPLPLPSQAQPHSHTPPSQSALQPQQPPREQPLPPAPSMPHIKPPPTTPIPQLP 358

Query: 531 PKPEPELLLPPKPKPELLLPPKPEPEKLLLPPKPKPKLLLPPKPESELLLPPKPEPELII 590
            +          P P   +P    P   L P    P    P      L L P+ +P   +
Sbjct: 359 NQSHKHPPHLQGPSPFPQMPSNLPPPPALKPLSSLPTHHPPSAHPPPLQLMPQSQPLQSV 418

Query: 591 PPKPEPEILIPPKPEPELLLPPKPEPEILLPPKPEPELLLPPKPEPEILLPPKPEPELLL 650
           P +P P +       P+    P        P  P  +        P I  PP        
Sbjct: 419 PAQP-PVLTQSQSLPPKASTHPHSGLHSGPPQSPFAQHPFTSGGLPAIGPPPSLPTSTPA 477

Query: 651 PPKPESELLLP----LKPEPEILLPPKPEPELLLPPKPEPELLLPPKP 694
            P   S    P    L        P  P P + +  +P  E   P  P
Sbjct: 478 APPRASSGSQPPGSALPSSGGCAGPGPPLPPIQIKEEPLDEAEEPESP 525

Atrophin-1 is the protein product of the dentatorubral-pallidoluysian atrophy (DRPLA) gene. DRPLA OMIM:125370 is a progressive neurodegenerative disorder. It is caused by the expansion of a CAG repeat in the DRPLA gene on chromosome 12p. This results in an extended polyglutamine region in atrophin-1, that is thought to confer toxicity to the protein, possibly through altering its interactions with other proteins. The expansion of a CAG repeat is also the underlying defect in six other neurodegenerative disorders, including Huntington's disease. One interaction of expanded polyglutamine repeats that is thought to be pathogenic is that with the short glutamine repeat in the transcriptional coactivator CREB binding protein, CBP. This interaction draws CBP away from its usual nuclear location to the expanded polyglutamine repeat protein aggregates that are characteristic of the polyglutamine neurodegenerative disorders. This interferes with CBP-mediated transcription and causes cytotoxicity. Length = 979

>gnl|CDD|236669 PRK10263, PRK10263, DNA translocase FtsK; Provisional

 Score = 51.2 bits (122), Expect = 4e-06
 Identities = 46/224 (20%), Positives = 74/224 (33%), Gaps = 12/224 (5%)

Query: 346 PEDP-EPTKPQLPEDPEPTKPQLPEVPEPTKPQLPE-VLEPTKLQLPEDPEPTKPQLPED 403
           P +P   T P    D  P +P +   P P  PQ  E V+ P     P+  +  +P +  +
Sbjct: 336 PVEPVTQTPPVASVDVPPAQPTVAWQPVP-GPQTGEPVIAPAPEGYPQQSQYAQPAVQYN 394

Query: 404 PETTKPQLPEVPEPTKLQLPEVPEPTKPELPEVPELTKTQLPEVPEPTKPQILDKKEPVL 463
               +P  P+ P           +P     PE P       P   +P        +E   
Sbjct: 395 EPLQQPVQPQQPYYAPAAEQPAQQPYYAPAPEQPAQQPYYAPAPEQPVAGNAWQAEEQQS 454

Query: 464 LDKKEPVLLDKKEPVLPPKPEPEILLPPKPEPELLLPPKPEPELLLPPK-----LEPKLL 518
               +     ++    P   EP    P   E + ++ P+P  E   P +      E    
Sbjct: 455 TFAPQSTYQTEQTYQQPAAQEPLYQQPQPVEQQPVVEPEPVVEETKPARPPLYYFEEVEE 514

Query: 519 LPPKSEPELLLPPKPEPELLLPPKPKPELLLPPKPEPEKLLLPP 562
              +   +L    +P PE    P  +PE +      P    +PP
Sbjct: 515 KRAREREQLAAWYQPIPE----PVKEPEPIKSSLKAPSVAAVPP 554

Length = 1355

>gnl|CDD|223065 PHA03378, PHA03378, EBNA-3B; Provisional

 Score = 50.8 bits (121), Expect = 5e-06
 Identities = 50/216 (23%), Positives = 65/216 (30%), Gaps = 7/216 (3%)

Query: 481 PKPEPEILLPPKPEPELLLPPKPEPELLLPPKLEPKLLLPPKSEPELLLPP-KPEPELLL 539
           P P P     P+P       P+       P  L P  + P + +P        P P    
Sbjct: 596 PWPVPHPSQTPEPPTTQSHIPETSAPRQWPMPLRPIPMRPLRMQPITFNVLVFPTPHQ-- 653

Query: 540 PPKPKPELLLPPKPEPEKLLLPPKPK-PKLLLPPKPESELLLPPKPEPELIIPPKPEPEI 598
           PP+ +     P   +   +   P P     +LP +     + PP   P  + PP   P  
Sbjct: 654 PPQVEITPYKPTWTQIGHIPYQPSPTGANTMLPIQWAPGTMQPPPRAPTPMRPPAAPPGR 713

Query: 599 LIPPKPEPELLLPPKPEPEILLPPKPEPELLLPPKPEPEILLPPKPEPELLLPPKPESEL 658
              P        PP   P    PP   P    PP   P    PP   P    PP      
Sbjct: 714 AQRPAAATGRARPPAAAPGRARPPAAAPGRARPPAAAPGRARPPAAAPGRARPPAAAPGA 773

Query: 659 LLPLKPEPEILLPPKPEPELLLPPKPEPELLLPPKP 694
             P  P      PP P+      P P+P     P  
Sbjct: 774 PTPQPPPQ---APPAPQQRPRGAPTPQPPPQAGPTS 806

Length = 991

>gnl|CDD|236669 PRK10263, PRK10263, DNA translocase FtsK; Provisional

 Score = 49.7 bits (118), Expect = 1e-05
 Identities = 33/160 (20%), Positives = 51/160 (31%), Gaps = 4/160 (2%)

Query: 289 QTPIVPEPTKQELPEVPETTKPQLPEVPEPTKSQLPEVPEPTKPQLPEVLEPTTLQLPED 348
           Q P+ P+             +P     PE    Q    P P +P      +    Q    
Sbjct: 398 QQPVQPQQPYYAPAAEQPAQQPYYAPAPEQPAQQPYYAPAPEQPVAGNAWQAEEQQSTFA 457

Query: 349 PEPTKPQLPEDPEPTKPQLPEVPEPTKPQLPEVLEPTKLQLPEDPEPTKPQLPEDPETTK 408
           P+ T        +P   +          Q   V+EP  +   E+ +P +P L    E  +
Sbjct: 458 PQSTYQTEQTYQQPAAQEPLYQQPQPVEQ-QPVVEPEPVV--EETKPARPPLYYFEEVEE 514

Query: 409 PQLPEVPEPTKLQLPEVPEPTKPELPEVPELTKTQLPEVP 448
            +  E  +      P +PEP K   P    L    +  VP
Sbjct: 515 KRAREREQLAAWYQP-IPEPVKEPEPIKSSLKAPSVAAVP 553

Length = 1355

>gnl|CDD|236669 PRK10263, PRK10263, DNA translocase FtsK; Provisional

 Score = 49.7 bits (118), Expect = 1e-05
 Identities = 51/227 (22%), Positives = 69/227 (30%), Gaps = 29/227 (12%)

Query: 283 PGEPEVQTPIVPEP-TKQELPEVPETTKPQLPEVPEPTKSQLPE----VPEPTKP----- 332
           P EP  QTP V         P V     P  P+  EP  +  PE      +  +P     
Sbjct: 336 PVEPVTQTPPVASVDVPPAQPTVAWQPVPG-PQTGEPVIAPAPEGYPQQSQYAQPAVQYN 394

Query: 333 ---QLPEVLEPTTLQLPEDPEPTKPQLPEDPEPTKPQLPEVPEPTKPQLPEVLEPTKLQL 389
              Q P   +        +    +P     PE    Q    P P +P      +  + Q 
Sbjct: 395 EPLQQPVQPQQPYYAPAAEQPAQQPYYAPAPEQPAQQPYYAPAPEQPVAGNAWQAEEQQS 454

Query: 390 PEDPEPTKPQLPEDPETTKPQLPEVPEPTKLQLPEVPEPTKPELPEVPELTKTQLP---- 445
              P+ T        E T  Q P   EP   Q   V +    E   V E TK   P    
Sbjct: 455 TFAPQST-----YQTEQTYQQ-PAAQEPLYQQPQPVEQQPVVEPEPVVEETKPARPPLYY 508

Query: 446 --EVPEP---TKPQILDKKEPVLLDKKEPVLLDKKEPVLPPKPEPEI 487
             EV E     + Q+    +P+    KEP  +            P +
Sbjct: 509 FEEVEEKRAREREQLAAWYQPIPEPVKEPEPIKSSLKAPSVAAVPPV 555

Length = 1355

>gnl|CDD|237864 PRK14950, PRK14950, DNA polymerase III subunits gamma and tau; Provisional

 Score = 49.4 bits (118), Expect = 1e-05
 Identities = 32/102 (31%), Positives = 39/102 (38%), Gaps = 7/102 (6%)

Query: 577 ELLLPPKPEPELIIPPKPEPEILIPPKPEPELLLPPKPEPEILLPPK-PEPELLLPPKPE 635
           E LL P P P    P KP      P +P P     PK      +PPK P  E   PP   
Sbjct: 357 EALLVPVPAP---QPAKPTAAAPSPVRPTPAPSTRPKAAAAANIPPKEPVRETATPPPVP 413

Query: 636 PEILLPPKPEPELLLPPKPESELLLPLKPEPEILLPPKPEPE 677
           P  + PP P      P    + + +  KP+     PP P  E
Sbjct: 414 PRPVAPPVPHTPESAPKLTRAAIPVDEKPKYT---PPAPPKE 452

Length = 585

>gnl|CDD|236766 PRK10811, rne, ribonuclease E; Reviewed

 Score = 49.3 bits (118), Expect = 1e-05
 Identities = 37/184 (20%), Positives = 54/184 (29%), Gaps = 17/184 (9%)

Query: 283  PGEPEVQTPIVPEPTKQELPEVPETT--KPQLPEVPEPTKSQLPEVPEPTKPQLPEVLEP 340
            P + +V+         Q  P V E        P V  P    + EV E          E 
Sbjct: 850  PQDVQVE-EQREAEEVQVQPVVAEVPVAAAVEPVVSAPVVEAVAEVVEEPVVVAEPQPEE 908

Query: 341  TTLQLPEDPEPTKPQLPEDPEPTKPQLPEVPEPTKPQLPEVLEPTKLQLPEDP-EPTKPQ 399
              +     PE     + E P+        V +        V+EP       +    T   
Sbjct: 909  VVVVETTHPEVIAAPVTEQPQVITESDVAVAQEVAEHAEPVVEPQDETADIEEAAETAEV 968

Query: 400  LPEDPET-TKPQLPEVPEPTKLQLPEVPEPTKPELPEVPE-----------LTKTQLPE- 446
            +  +PE   +P  P V E             +    +VPE           +T+   PE 
Sbjct: 969  VVAEPEVVAQPAAPVVAEVAAEVETVTAVEPEVAPAQVPEATVEHNHATAPMTRAPAPEY 1028

Query: 447  VPEP 450
            VPE 
Sbjct: 1029 VPEA 1032

Length = 1068

>gnl|CDD|114603 pfam05887, Trypan_PARP, Procyclic acidic repetitive protein (PARP)

 Score = 46.1 bits (108), Expect = 1e-05
 Identities = 32/93 (34%), Positives = 42/93 (45%)

Query: 554 EPEKLLLPPKPKPKLLLPPKPESELLLPPKPEPELIIPPKPEPEILIPPKPEPELLLPPK 613
           EP    +    K K     K  ++      P+ E     +PEPE     +PEPE     +
Sbjct: 30  EPADKGITKGGKGKGEKGTKVGADDTNGTDPDDEPEEEEEPEPEEEGEEEPEPEEEGEEE 89

Query: 614 PEPEILLPPKPEPELLLPPKPEPEILLPPKPEP 646
           PEPE     +PEPE    P+PEPE    P+PEP
Sbjct: 90  PEPEETGEEEPEPEPEPEPEPEPEPEPEPEPEP 122

This family consists of several Trypanosoma brucei procyclic acidic repetitive protein (PARP) like sequences. The procyclic acidic repetitive protein (parp) genes of Trypanosoma brucei encode a small family of abundant surface proteins whose expression is restricted to the procyclic form of the parasite. They are found at two unlinked loci, parpA and parpB; transcription of both loci is developmentally regulated. Length = 145

>gnl|CDD|237940 PRK15313, PRK15313, autotransport protein MisL; Provisional

 Score = 49.0 bits (116), Expect = 2e-05
 Identities = 30/108 (27%), Positives = 45/108 (41%), Gaps = 28/108 (25%)

Query: 287 EVQTPIVPEPTKQELPEVPETTKPQLPEVPEPTKSQLPEVPEPTKPQLPEVLEPTTLQLP 346
           E   PI+P+P    +P+         P +P+P        P+P  P +P+         P
Sbjct: 559 EPDEPIIPDPVDPVIPD---------PVIPDPVD------PDPVDPVIPD---------P 594

Query: 347 EDPEPTKPQLPEDPEPTKPQLPEVPEPTKPQLPEVLEPTKLQLPEDPE 394
             P+P  P  P DPEP  P    +P+PT P + +   P   +    PE
Sbjct: 595 VIPDPVDPD-PVDPEPVDPV---IPDPTIPDIGQSDTPPITEHQFRPE 638

Length = 955

>gnl|CDD|223039 PHA03307, PHA03307, transcriptional regulator ICP4; Provisional

 Score = 49.0 bits (117), Expect = 2e-05
 Identities = 28/155 (18%), Positives = 39/155 (25%), Gaps = 7/155 (4%)

Query: 541 PKPKPELLLPPKPEPEKLLLPPKPKPKLLLPPKPESELLLPPKPEPELIIPPKPEPEILI 600
              + E    P P P       + +          +      +  P    P  P+P    
Sbjct: 61  ACDRFEPPTGPPPGPGTEAPANESRSTPTWSLSTLAPASPAREGSPTPPGPSSPDP---- 116

Query: 601 PPKPEPELLLPPKPEPEILLPPKPEPELLLPPKPEPEILLPPKPEPELLLPPKPESELLL 660
           PP   P    PP P P++    +P      PP   P                  ++ L L
Sbjct: 117 PPPTPPPASPPPSPAPDLSEMLRPVGSPGPPPAASPPAAGASPAAVASDAASSRQAALPL 176

Query: 661 PLKPEPEILLPPKPEPELLLPPKPEPELLLPPKPE 695
               E          P    PP   P    P  P 
Sbjct: 177 SSPEETA---RAPSSPPAEPPPSTPPAAASPRPPR 208

Length = 1352

>gnl|CDD|237864 PRK14950, PRK14950, DNA polymerase III subunits gamma and tau; Provisional

 Score = 48.3 bits (115), Expect = 3e-05
 Identities = 33/98 (33%), Positives = 38/98 (38%), Gaps = 4/98 (4%)

Query: 559 LLPPKPKPKLLLPPKPESELLLPPKPEPELIIPPKPEPEILIPPK-PEPELLLPPKPEPE 617
           LL P P P    P KP +    P +P P     PK      IPPK P  E   PP   P 
Sbjct: 359 LLVPVPAP---QPAKPTAAAPSPVRPTPAPSTRPKAAAAANIPPKEPVRETATPPPVPPR 415

Query: 618 ILLPPKPEPELLLPPKPEPEILLPPKPEPELLLPPKPE 655
            + PP P      P      I +  KP+     PPK E
Sbjct: 416 PVAPPVPHTPESAPKLTRAAIPVDEKPKYTPPAPPKEE 453

Length = 585

>gnl|CDD|236138 PRK07994, PRK07994, DNA polymerase III subunits gamma and tau; Validated

 Score = 47.9 bits (115), Expect = 3e-05
 Identities = 32/157 (20%), Positives = 48/157 (30%), Gaps = 5/157 (3%)

Query: 282 KPGEPEVQTPIVPEPTKQELPEVPETTKPQLPEVPEPTKSQLPEVPEPTKPQLPEV-LEP 340
            P  P  +  + P+           T  P    V  P    +P  P     Q P V L  
Sbjct: 360 HPAAPLPEPEVPPQSAAP-AASAQATAAPTAA-VAPPQAPAVPPPPASAPQQAPAVPLPE 417

Query: 341 TTLQLPEDPEP-TKPQLPEDPEPTKPQLPEVPEPTKPQLPEVLEPTKLQLPEDPEPTKPQ 399
           TT QL    +   + Q     + ++P       P    L  +          +  P K +
Sbjct: 418 TTSQLLAARQQLQRAQGATKAKKSEPAAASRARPVNSALERLASVRPAPSALEKAPAKKE 477

Query: 400 LPEDPETTKPQLPEVPEPTKLQLPEVPEPTK-PELPE 435
                 T   ++ + P  T   L +  E  K PEL  
Sbjct: 478 AYRWKATNPVEVKKEPVATPKALKKALEHEKTPELAA 514

Length = 647

>gnl|CDD|236138 PRK07994, PRK07994, DNA polymerase III subunits gamma and tau; Validated

 Score = 47.9 bits (115), Expect = 3e-05
 Identities = 28/162 (17%), Positives = 43/162 (26%), Gaps = 10/162 (6%)

Query: 309 KPQLPEVPEPTKSQLPEVPEPTKPQLPEVLEPTTLQLPEDPEPTKPQLPEDPEPTKPQLP 368
            P  P +PEP        P+   P                P+      P    P +    
Sbjct: 360 HPAAP-LPEP-----EVPPQSAAPAASAQATAAPTAAVAPPQAPAVPPPPASAPQQAPAV 413

Query: 369 EVPEPTKPQLPEVLEPTKLQLPEDPEPTKPQLPEDPETTKPQLPEVPEPTKLQLPEVPEP 428
            +PE T   L    +  + Q     + ++P            L  +             P
Sbjct: 414 PLPETTSQLLAARQQLQRAQGATKAKKSEPAAASRARPVNSALERLASVRPAPSALEKAP 473

Query: 429 TKPELPEV----PELTKTQLPEVPEPTKPQILDKKEPVLLDK 466
            K E        P   K +    P+  K  +  +K P L  K
Sbjct: 474 AKKEAYRWKATNPVEVKKEPVATPKALKKALEHEKTPELAAK 515

Length = 647

>gnl|CDD|237864 PRK14950, PRK14950, DNA polymerase III subunits gamma and tau; Provisional

 Score = 47.5 bits (113), Expect = 4e-05
 Identities = 32/103 (31%), Positives = 39/103 (37%), Gaps = 8/103 (7%)

Query: 536 ELLLPPKPKPELLLPPKPEPEKLLLPPKPKPKLLLPPKPESELLLPPK-PEPELIIPPKP 594
           E LL P P P+   P    P     P +P P     PK  +   +PPK P  E   PP  
Sbjct: 357 EALLVPVPAPQPAKPTAAAPS----PVRPTPAPSTRPKAAAAANIPPKEPVRETATPPPV 412

Query: 595 EPEILIPPKPEPELLLPPKPEPEILLPPKPEPELLLPPKPEPE 637
            P  + PP P      P      I +  KP+     PP P  E
Sbjct: 413 PPRPVAPPVPHTPESAPKLTRAAIPVDEKPKYT---PPAPPKE 452

Length = 585

>gnl|CDD|237864 PRK14950, PRK14950, DNA polymerase III subunits gamma and tau; Provisional

 Score = 47.1 bits (112), Expect = 5e-05
 Identities = 23/89 (25%), Positives = 30/89 (33%), Gaps = 3/89 (3%)

Query: 529 LPPKPEPELLLPPKPKPELLLPPKPEPEKLLLPPKPKPKLLLPPKPESELLLPPKPEPEL 588
            P KP      P +P P     PK      + P +P  +   PP      + PP P    
Sbjct: 367 QPAKPTAAAPSPVRPTPAPSTRPKAAAAANIPPKEPVRETATPPPVPPRPVAPPVPHTPE 426

Query: 589 IIPPKPEPEILIPPKPEPELLLPPKPEPE 617
             P      I +  KP+     PP P  E
Sbjct: 427 SAPKLTRAAIPVDEKPKYT---PPAPPKE 452

Length = 585

>gnl|CDD|221309 pfam11912, DUF3430, Protein of unknown function (DUF3430)

 Score = 45.2 bits (107), Expect = 6e-05
 Identities = 25/202 (12%), Positives = 49/202 (24%), Gaps = 37/202 (18%)

Query: 1009 NLSQNYYYHQNLSLKYYCRRNLSQNYYCHQNQSPNNYYYHLNLSQNYYFH-QNQSQNYYY 1067
             +       Q ++   Y      Q+  C    S     Y + L +       N      +
Sbjct: 13   LILNFVISQQYINFIPY------QDGDCSGEGSSIGIGYSILLDECITNDNGNNYSFSSF 66

Query: 1068 HQNLSQNYYYHQNLSLKYYCRRNLSQN--------YYCHQNQSQNYYYHQNQSQNYYYHQ 1119
              +   N   +        C                Y        Y Y  + + +     
Sbjct: 67   SDSSDGNIIKYNYYE-DSNCSGKPISTETFEIGSCVYSSSYSGSYYSYISSCTDSPEIPS 125

Query: 1120 NQSQKYYYH----QNLSQNYYY----------HQNLSQNYYCHQNQSQNYYYHQNQSQKY 1165
            N     YY+     N +  Y            +   S  YYC+     N  Y        
Sbjct: 126  NSLVTVYYNGSDCSNDNFLYIEYFTNNTCINNNNGFSFTYYCNST---NQPYTTYCKSSN 182

Query: 1166 YYHQNLSQNCYYHQNRSQNYYY 1187
              +  ++ +C    +++  +  
Sbjct: 183  CNNSPITLSC----SQNNPFKN 200

This family of proteins are functionally uncharacterized. This protein is found in eukaryotes. Proteins in this family are typically between 209 to 265 amino acids in length. Length = 204

>gnl|CDD|235124 PRK03427, PRK03427, cell division protein ZipA; Provisional

 Score = 46.2 bits (110), Expect = 6e-05
 Identities = 22/137 (16%), Positives = 35/137 (25%), Gaps = 10/137 (7%)

Query: 327 PEPTKPQLPEVLEPTTLQLPEDPEPTKPQLPEDPEPTKPQLPEVPEPTKPQLPEVLEPTK 386
             P   Q  E   P+        +P            +P   +VP    P+  +      
Sbjct: 73  HAPANAQEHEAARPSP---QHQYQPPYASAQPRQPVQQPPEAQVPPQHAPRPAQPAPQPV 129

Query: 387 LQLPEDPEPTKPQLPEDPETTKPQLPEVPEPTKLQLPEVPEPTKPELPEVPELTKTQLPE 446
            Q    P+P +P          P  P+V    +          +   P  P       P 
Sbjct: 130 QQPAYQPQPEQPLQQ-------PVSPQVAPAPQPVHSAPQPAQQAFQPAEPVAAPQPEPV 182

Query: 447 VPEPTKPQILDKKEPVL 463
                      +KE V+
Sbjct: 183 AEPAPVMDKPKRKEAVI 199

Length = 333

>gnl|CDD|225629 COG3087, FtsN, Cell division protein [Cell division and chromosome partitioning]

 Score = 45.2 bits (107), Expect = 9e-05
 Identities = 32/152 (21%), Positives = 56/152 (36%), Gaps = 6/152 (3%)

Query: 297 TKQELPEVP-ETTKPQLPEVPEPTKSQLPEVPEPTKPQLPEVLEPTTLQLPEDPEPTKPQ 355
            K  +P +  + T   LP  PE   S +  + +     +P+  EP  ++  E   P + Q
Sbjct: 40  KKAPIPFLSNQGTGSLLPNKPEEVWSYIKALEDRQIG-VPQPTEPAAVKDAERLTPEQRQ 98

Query: 356 L----PEDPEPTKPQLPEVPEPTKPQLPEVLEPTKLQLPEDPEPTKPQLPEDPETTKPQL 411
           L      D +    QL E PE  + +     +  K Q       T+P  P+        +
Sbjct: 99  LLEQMEVDQKAQPTQLGEQPEQARIEEQPRTQSQKAQSQATTVQTQPVKPKPRPEKPQPV 158

Query: 412 PEVPEPTKLQLPEVPEPTKPELPEVPELTKTQ 443
              P P  ++     E   P  P+  +  +T+
Sbjct: 159 APAPAPEPVEKAPKAEAAPPPKPKAEDAAETR 190

Length = 264

>gnl|CDD|217393 pfam03154, Atrophin-1, Atrophin-1 family

 Score = 46.2 bits (109), Expect = 1e-04
 Identities = 64/237 (27%), Positives = 88/237 (37%), Gaps = 16/237 (6%)

Query: 477 PVLPPKPEPEILLPPKPEPELLLPPKPEPELLLPPKLEPKLLLPPKSEPELLLPPKPEPE 536
             +PP+  P    P     +           L P +L       P  +P+      P+P 
Sbjct: 201 QAVPPQGSPIAAQPAPQPQQPSPLSLISAPSLHPQRLPSP---HPPLQPQTASQQSPQPP 257

Query: 537 LLLPPKPKPELLLPPKPEPEKLLL-PPKPKPKLLLPPKPES--ELLLPPKPEPELIIP-- 591
                 P+     P  P P  L   P   +     PP+P    +  +PP P P    P  
Sbjct: 258 APSSRHPQSSHHGPGPPMPHALQQGPVFLQHPSSNPPQPFGLAQSQVPPLPLPSQAQPHS 317

Query: 592 -PKPEPEILIPPKPEPELLLPPKPE-PEILLPPK-PEPELLLPPKPEPEILLPPKPEPEL 648
              P    L P +P  E  LPP P  P I  PP  P P+L       P  L  P P P++
Sbjct: 318 HTPPSQSALQPQQPPREQPLPPAPSMPHIKPPPTTPIPQLPNQSHKHPPHLQGPSPFPQM 377

Query: 649 L--LPPKPESELLLPLKPEPEILLPPKPEPELLLPPKPEPELLLPPKPETITTTKTL 703
              LPP P    L PL   P    P    P L L P+ +P   +P +P  +T +++L
Sbjct: 378 PSNLPPPPA---LKPLSSLPTHHPPSAHPPPLQLMPQSQPLQSVPAQPPVLTQSQSL 431

Atrophin-1 is the protein product of the dentatorubral-pallidoluysian atrophy (DRPLA) gene. DRPLA OMIM:125370 is a progressive neurodegenerative disorder. It is caused by the expansion of a CAG repeat in the DRPLA gene on chromosome 12p. This results in an extended polyglutamine region in atrophin-1, that is thought to confer toxicity to the protein, possibly through altering its interactions with other proteins. The expansion of a CAG repeat is also the underlying defect in six other neurodegenerative disorders, including Huntington's disease. One interaction of expanded polyglutamine repeats that is thought to be pathogenic is that with the short glutamine repeat in the transcriptional coactivator CREB binding protein, CBP. This interaction draws CBP away from its usual nuclear location to the expanded polyglutamine repeat protein aggregates that are characteristic of the polyglutamine neurodegenerative disorders. This interferes with CBP-mediated transcription and causes cytotoxicity. Length = 979

>gnl|CDD|114603 pfam05887, Trypan_PARP, Procyclic acidic repetitive protein (PARP)

 Score = 43.0 bits (100), Expect = 1e-04
 Identities = 26/62 (41%), Positives = 33/62 (53%)

Query: 594 PEPEILIPPKPEPELLLPPKPEPEILLPPKPEPELLLPPKPEPEILLPPKPEPELLLPPK 653
           P+ E     +PEPE     +PEPE     +PEPE     +PEPE    P+PEPE    P+
Sbjct: 60  PDDEPEEEEEPEPEEEGEEEPEPEEEGEEEPEPEETGEEEPEPEPEPEPEPEPEPEPEPE 119

Query: 654 PE 655
           PE
Sbjct: 120 PE 121

This family consists of several Trypanosoma brucei procyclic acidic repetitive protein (PARP) like sequences. The procyclic acidic repetitive protein (parp) genes of Trypanosoma brucei encode a small family of abundant surface proteins whose expression is restricted to the procyclic form of the parasite. They are found at two unlinked loci, parpA and parpB; transcription of both loci is developmentally regulated. Length = 145

>gnl|CDD|178748 PLN03209, PLN03209, translocon at the inner envelope of chloroplast subunit 62; Provisional

 Score = 46.1 bits (109), Expect = 1e-04
 Identities = 56/279 (20%), Positives = 80/279 (28%), Gaps = 32/279 (11%)

Query: 294 PEPTKQELPEVPETTKPQLPEVPEPTKSQLPEVPEPTKPQLPEVLEPTTLQLPEDPEPTK 353
             P + +  + P+   P  P  PE     + E P   K  +P  L P T    ED +P  
Sbjct: 328 VPPKESDAADGPKPV-PTKPVTPEAPSPPIEEEPPQPKAVVPRPLSPYTAY--EDLKPPT 384

Query: 354 PQLPEDPEPTKPQLPEVPEPTKPQLPEVLEPTKLQLPEDPEPTKPQLPEDPETTKPQLPE 413
             +P  P  +      V    KP  P       +          P++       K   P 
Sbjct: 385 SPIPTPPSSSPASSKSVDAVAKPAEP------DVVPSPGSASNVPEVEPAQVEAKKTRPL 438

Query: 414 VPEPT--KLQLPEVPEPTKPELPEVPELTKTQLPEVPEPTKPQILDKKEPVLLDKKEPVL 471
            P      L+ P  P PT P        + + +P VP+                      
Sbjct: 439 SPYARYEDLKPPTSPSPTAPTGVSPSVSSTSSVPAVPDTAPATA---------------- 482

Query: 472 LDKKEPVLPPKPEPEILLPPKPEPELLLPPKPEPELLLPPKLEPKLLLPPKSEPELLLPP 531
               +   PP      L P     +L  P  P P   +            K         
Sbjct: 483 --ATDAAAPPPANMRPLSPYAVYDDLKPPTSPSPAAPVGKVAPSSTNEVVKVGNSAPPTA 540

Query: 532 KPEPELLLPPKPKPELLLPPKPEPEKLLLPPKPKPKLLL 570
             + +    PKP+P   L P    E L  P  P P  +L
Sbjct: 541 LADEQHHAQPKPRP---LSPYTMYEDLKPPTSPTPSPVL 576

Length = 576

>gnl|CDD|237864 PRK14950, PRK14950, DNA polymerase III subunits gamma and tau; Provisional

 Score = 45.2 bits (107), Expect = 2e-04
 Identities = 29/102 (28%), Positives = 36/102 (35%), Gaps = 6/102 (5%)

Query: 526 ELLLPPKPEPELLLPPKPKPELLLPPKPEPEKLLLPPKPKPKLLLPPKPESELLLPPKPE 585
           E LL P P P    P KP      P +P P     P       + P +P  E   PP   
Sbjct: 357 EALLVPVPAP---QPAKPTAAAPSPVRPTPAPSTRPKAAAAANIPPKEPVRETATPPPVP 413

Query: 586 PELIIPPKPEPEILIPPKPEPELLLPPKPEPEILLPPKPEPE 627
           P  + PP P      P      + +  KP+     PP P  E
Sbjct: 414 PRPVAPPVPHTPESAPKLTRAAIPVDEKPKYT---PPAPPKE 452

Length = 585

>gnl|CDD|223039 PHA03307, PHA03307, transcriptional regulator ICP4; Provisional

 Score = 45.5 bits (108), Expect = 2e-04
 Identities = 32/156 (20%), Positives = 38/156 (24%), Gaps = 9/156 (5%)

Query: 531 PKPEPELLLPPKPKPELLLPPKPEPEKLLLPPKPKPKLLLPPKPESELLLPPKPEPELII 590
            + EP    PP P  E    P  E                P +  S     P        
Sbjct: 63  DRFEPPTGPPPGPGTE---APANESRSTPTWSLSTLAPASPAREGSPTPPGPSSPDP--- 116

Query: 591 PPKPEPEILIPPKPEPELLLPPKPEPEILLPPKPEPELLLPPKPEPEILLPPKPEPELLL 650
           PP   P    PP P P+L    +P      PP   P                  +  L L
Sbjct: 117 PPPTPPPASPPPSPAPDLSEMLRPVGSPGPPPAASPPAAGASPAAVASDAASSRQAALPL 176

Query: 651 PPKPESELLLPLKPEPEILLPPKPEPELLLPPKPEP 686
               E+         P    PP   P    P  P  
Sbjct: 177 SSPEETA---RAPSSPPAEPPPSTPPAAASPRPPRR 209

Length = 1352

>gnl|CDD|236768 PRK10819, PRK10819, transport protein TonB; Provisional

 Score = 44.3 bits (105), Expect = 2e-04
 Identities = 23/75 (30%), Positives = 39/75 (52%), Gaps = 1/75 (1%)

Query: 540 PPKPKPELLLPPKPEPEKLLLPPKPKPKLLLPPKPESELLLPPKPEPELIIPPKPEPEIL 599
             +P PE ++ P+PEPE +  PPK  P ++  P+P+ +    PKP+P   +  +P+ E+ 
Sbjct: 63  AVQPPPEPVVEPEPEPEPIPEPPKEAPVVIPKPEPKPKPKPKPKPKPVKKVEEQPKREVK 122

Query: 600 IPPKPEPELLLPPKP 614
            P +P P        
Sbjct: 123 -PVEPRPASPFENTA 136

Length = 246

>gnl|CDD|216001 pfam00577, Usher, Type VII secretion system (T7SS), usher protein

 Score = 44.5 bits (106), Expect = 3e-04
 Identities = 28/146 (19%), Positives = 42/146 (28%), Gaps = 38/146 (26%)

Query: 1111 QSQNYYYHQNQSQKYYYHQNLSQ--------NYYYHQNLSQNYYC------HQNQSQNYY 1156
            +  N   H  QS +  Y ++L +         Y Y    S+ YY        +N   N  
Sbjct: 237  KLDNQSSHNGQSYRLSYSKSLDETGTNFTLAGYRYS---SRGYYTLSDFLDTRNSGYNLR 293

Query: 1157 YHQNQSQKYYYHQNLSQN---------CYYHQNRSQNYYYHQNLSQNYYYHQNQSQKNYY 1207
            Y +    K  Y   LSQ+             Q     Y+   N S +     N +     
Sbjct: 294  YRKKN--KERYQLTLSQSLGGWGSLYLSGSRQT----YWGDDNTSTSLQVGYNFNIGRVS 347

Query: 1208 YHLNLSQNYYYHQNLSQNYYYHQNSF 1233
              LN S +               +S 
Sbjct: 348  VSLNWSYSRN------AGSNNRDDSL 367

The chaperone-usher (CU) pathway or Type VII secretion system (T7SS) in Gram-negative (diderm) bacteria is responsible for the secretion and assembly of prepilins for fimbriae biogenesis, the prototypical Type 1 pili. Following the prepilins export to the periplasm by the Sec translocon, the biogenesis of fimbriae requires a two-component assembly and transport system which is composed of a periplasmic chaperone and an outer membrane protein, which has been termed a molecular 'usher'. The usher protein is rather large (from 86 to 100 Kd) and seems to be mainly composed of membrane-spanning beta-sheets, a structure reminiscent of porins. Although the degree of sequence similarity of these proteins is not very high they share a number of characteristics. One of these is the presence of two pairs of cysteines, the first one located in the N-terminal part and the second at the C-terminal extremity that are probably involved in disulphide bonds. The best conserved region is located in the central part of these proteins. Length = 552

>gnl|CDD|236766 PRK10811, rne, ribonuclease E; Reviewed

 Score = 44.6 bits (106), Expect = 3e-04
 Identities = 33/165 (20%), Positives = 47/165 (28%), Gaps = 15/165 (9%)

Query: 293 VPEPTKQELPEVPETTKPQ-LPEVPEPT--KSQLPEVPEPTKPQLPEVLEPTTLQLPEDP 349
           V  P   ++ E  E  + Q  P V E     +  P V  P    + EV+E   +     P
Sbjct: 847 VVRPQDVQVEEQREAEEVQVQPVVAEVPVAAAVEPVVSAPVVEAVAEVVEEPVVVAEPQP 906

Query: 350 EPTKPQLPEDPEPTKPQLPEVPEPTKPQLPEVLEPTKLQLPEDPEPTKPQLPEDPETTKP 409
           E         PE     + E P+        V +       E  EP     P+D      
Sbjct: 907 EEVVVVETTHPEVIAAPVTEQPQVITESDVAVAQEV----AEHAEPVVE--PQDETADIE 960

Query: 410 QLPEVPEPTKLQLPEVPEPTKPELPEVPELTKTQLPEVPEPTKPQ 454
           +  E  E        V EP     P  P + +             
Sbjct: 961 EAAETAE------VVVAEPEVVAQPAAPVVAEVAAEVETVTAVEP 999

Length = 1068

>gnl|CDD|236768 PRK10819, PRK10819, transport protein TonB; Provisional

 Score = 43.5 bits (103), Expect = 3e-04
 Identities = 30/99 (30%), Positives = 45/99 (45%), Gaps = 21/99 (21%)

Query: 476 EPVLPPKPEPEILLPPKPEPELLLPPKPEPELLLPPKLEPKLLLPPKSEPELLLPPKPEP 535
           EP    +P PE ++ P+PEPE      P PE             PPK  P ++  P+P+P
Sbjct: 59  EPPQAVQPPPEPVVEPEPEPE------PIPE-------------PPKEAPVVIPKPEPKP 99

Query: 536 ELLLPPKPKPELLLPPKPEPEKLLLPPKPKPKLLLPPKP 574
           +    PKPKP   +  +P+ E  + P +P+P        
Sbjct: 100 KPKPKPKPKPVKKVEEQPKRE--VKPVEPRPASPFENTA 136

Length = 246

>gnl|CDD|236768 PRK10819, PRK10819, transport protein TonB; Provisional

 Score = 43.5 bits (103), Expect = 3e-04
 Identities = 31/104 (29%), Positives = 50/104 (48%), Gaps = 11/104 (10%)

Query: 571 PPKPESELLLPPKPEPELIIPPKPEPEILIPPKPEPELLLPPKPEPEILLPPKPEPELLL 630
           P +P S  ++ P          +P PE ++ P+PEPE      P PE   PPK  P ++ 
Sbjct: 44  PAQPISVTMVAPADLEP-PQAVQPPPEPVVEPEPEPE------PIPE---PPKEAPVVIP 93

Query: 631 PPKPEPEILLPPKPEPELLLPPKPESELLLPLKPEPEILLPPKP 674
            P+P+P+    PKP+P   +  +P+ E + P++P P        
Sbjct: 94  KPEPKPKPKPKPKPKPVKKVEEQPKRE-VKPVEPRPASPFENTA 136

Length = 246

>gnl|CDD|236768 PRK10819, PRK10819, transport protein TonB; Provisional

 Score = 43.5 bits (103), Expect = 3e-04
 Identities = 32/120 (26%), Positives = 51/120 (42%), Gaps = 11/120 (9%)

Query: 583 KPEPELIIPPKPEPEILIPPKPEPELLLPPKPEPEILLPPKPEPELLLPPKPEPEILLPP 642
               EL  P +P    ++ P          +P PE ++ P+PEPE      P PE   PP
Sbjct: 36  HQVIELPAPAQPISVTMVAPADLEPPQ-AVQPPPEPVVEPEPEPE------PIPE---PP 85

Query: 643 KPEPELLLPPKPESELLLPLKPEPEILLPPKPEPELLLPPKPEPELLLPPKPETITTTKT 702
           K  P ++  P+P+ +     KP+P   +  +P+ E + P +P P            T+ T
Sbjct: 86  KEAPVVIPKPEPKPKPKPKPKPKPVKKVEEQPKRE-VKPVEPRPASPFENTAPARPTSST 144

Length = 246

>gnl|CDD|237940 PRK15313, PRK15313, autotransport protein MisL; Provisional

 Score = 44.4 bits (104), Expect = 4e-04
 Identities = 23/98 (23%), Positives = 40/98 (40%), Gaps = 33/98 (33%)

Query: 283 PGEPEVQTPIVPEPTKQELPEVPETTKPQLPEVPEPTKSQLPEVPEPTKPQLPEVLEPTT 342
           P +P +  P++P+P        P+   P +P+         P +P+P  P          
Sbjct: 568 PVDPVIPDPVIPDPVD------PDPVDPVIPD---------PVIPDPVDPD--------- 603

Query: 343 LQLPEDPEPTKPQLPEDPEPTKPQLPEVPEPTKPQLPE 380
              P DPEP  P +P+      P +P++ +   P + E
Sbjct: 604 ---PVDPEPVDPVIPD------PTIPDIGQSDTPPITE 632

Length = 955

>gnl|CDD|237864 PRK14950, PRK14950, DNA polymerase III subunits gamma and tau; Provisional

 Score = 44.0 bits (104), Expect = 4e-04
 Identities = 31/102 (30%), Positives = 39/102 (38%), Gaps = 7/102 (6%)

Query: 587 ELIIPPKPEPEILIPPKPEPELLLPPKPEPEILLPPKPEPELLLPPK-PEPEILLPPKPE 645
           E ++ P P P    P KP      P +P P     PK      +PPK P  E   PP   
Sbjct: 357 EALLVPVPAP---QPAKPTAAAPSPVRPTPAPSTRPKAAAAANIPPKEPVRETATPPPVP 413

Query: 646 PELLLPPKPESELLLPLKPEPEILLPPKPEPELLLPPKPEPE 687
           P  + PP P +    P      I +  KP+     PP P  E
Sbjct: 414 PRPVAPPVPHTPESAPKLTRAAIPVDEKPKYT---PPAPPKE 452

Length = 585

>gnl|CDD|227588 COG5263, COG5263, FOG: Glucan-binding domain (YG repeat) [General function prediction only]

 Score = 43.7 bits (103), Expect = 4e-04
 Identities = 36/272 (13%), Positives = 70/272 (25%), Gaps = 34/272 (12%)

Query: 995  YFHQNQSQNYYYHQNLSQNYYYHQNLSLKYY----CRRNLSQNYYCHQ------NQSPNN 1044
                +    Y+       +     +     +     +  +   Y            SPN 
Sbjct: 20   NRVFSSGDEYWKEGYSDIHAKEVSDKKDFDFDKVAGKMKIGGAYKPKPSTAIQIGTSPNT 79

Query: 1045 YYYHLNLSQN-YYFHQN-QSQNYYYHQNLSQNYYYHQNLSLKYYCRRNLSQNYYCHQNQS 1102
                ++     YYF  +         Q L+ +        L     + +       +  +
Sbjct: 80   TSGEVSQYGAWYYFKADGVKNEKQGKQILTADGEAPSGKWLGTSSYQEIYYLKASGRYAT 139

Query: 1103 QNYYYHQNQSQNYYYHQNQSQKYYYHQNLS--QNYYYHQNLSQNYYCHQNQSQNYYYHQN 1160
              YY          +       YYY+++     N +   N S  Y           + ++
Sbjct: 140  NYYYDKSGTMAKKGWVYENGHWYYYNKDGGYAANGWQKDNGSWYYLKSDGGMMKTGWVKD 199

Query: 1161 QSQKYYYHQNLSQNCYYHQNRSQNYYYH----------QNLSQNYYY----------HQN 1200
             S K+YY  +             ++YY            N S  +YY             
Sbjct: 200  SSGKWYYFGSSGMMATGWVKDKGSWYYLDDSGDMATGWVNDSGRWYYLDGSGAMATGWVK 259

Query: 1201 QSQKNYYYHLNLSQNYYYHQNLSQNYYYHQNS 1232
             +   YY   +          +S  +YY  +S
Sbjct: 260  DNGNWYYLDASGGAMKTGWFKVSGKWYYLYSS 291

Length = 313

>gnl|CDD|236669 PRK10263, PRK10263, DNA translocase FtsK; Provisional

 Score = 43.9 bits (103), Expect = 6e-04
 Identities = 40/167 (23%), Positives = 65/167 (38%), Gaps = 13/167 (7%)

Query: 267 DPELGNLSDLNEDLKKPGEPEVQTPIVPEPTKQELPEVPETTKPQLPEVPEPTKSQLPEV 326
           D E   +  L +D   P EP     + P    Q+     +  +     V    + Q P+ 
Sbjct: 726 DFEFSPMKALLDD--GPHEPLFTPIVEPVQQPQQPVAPQQQYQQPQQPVAPQPQYQQPQQ 783

Query: 327 PEPTKPQLPEVLEPTTLQLPEDPEPTKPQLPEDPEPTKPQLPEVPEP--TKPQLPEVLEP 384
           P   +PQ  +  +P   Q P+  +P +P  P+ P+  +PQ P  P+P   +PQ P   +P
Sbjct: 784 PVAPQPQYQQPQQPVAPQ-PQYQQPQQPVAPQ-PQYQQPQQPVAPQPQYQQPQQPVAPQP 841

Query: 385 TKLQLPEDPEPTKPQLPEDPETTKPQLPEVPEPTKLQLPEVPEPTKP 431
               L        P L  + ++     P  P P+   L   P   +P
Sbjct: 842 QDTLL-------HPLLMRNGDSRPLHKPTTPLPSLDLLTPPPSEVEP 881

Length = 1355

>gnl|CDD|237864 PRK14950, PRK14950, DNA polymerase III subunits gamma and tau; Provisional

 Score = 43.3 bits (102), Expect = 9e-04
 Identities = 32/112 (28%), Positives = 37/112 (33%), Gaps = 16/112 (14%)

Query: 476 EPVLPPKPEPEILLPPKPEPELLLPPKPEPELLLPPKLEPKLLLPPKSEPELLLPPKPEP 535
           E +L P P P    P KP      P +P P     PK      +PPK         +P  
Sbjct: 357 EALLVPVPAP---QPAKPTAAAPSPVRPTPAPSTRPKAAAAANIPPK---------EPVR 404

Query: 536 ELLLPPKPKPELLLPPKPEPEKLLLPPKPKPKLLLPPKPESELLLPPKPEPE 587
           E   PP   P  + PP P          PK      P  E     PP P  E
Sbjct: 405 ETATPPPVPPRPVAPPVPHTP----ESAPKLTRAAIPVDEKPKYTPPAPPKE 452

Length = 585

>gnl|CDD|236669 PRK10263, PRK10263, DNA translocase FtsK; Provisional

 Score = 42.8 bits (100), Expect = 0.001
 Identities = 38/182 (20%), Positives = 58/182 (31%), Gaps = 16/182 (8%)

Query: 514 EPKLLLPPKSEPELLLPPKPEPELLLPPKPKPELLLPP-KPEPEKLLLPPKPKPKLLLPP 572
           EP    PP +  +    P  +P +   P P P+   P   P PE        + +   P 
Sbjct: 338 EPVTQTPPVASVD---VPPAQPTVAWQPVPGPQTGEPVIAPAPEGY----PQQSQYAQPA 390

Query: 573 KPESELLLPPKPEPELIIPPKPEPEILIPPKPEPELLLPPKPEPEILLPPKPEPELLLPP 632
              +E    P  +P     P   P    P +       P +P  +    P PE  +    
Sbjct: 391 VQYNE----PLQQPVQPQQPYYAPAAEQPAQQPYYAPAPEQPAQQPYYAPAPEQPVAGNA 446

Query: 633 KPEPEILLPPKPEPELLLPPKPESELLLPLKPEPEILLPPKPEPELLLPPKPEPELLLPP 692
               E      P+       + E     P   EP    P   E + ++ P+P  E   P 
Sbjct: 447 WQAEEQQSTFAPQSTY----QTEQTYQQPAAQEPLYQQPQPVEQQPVVEPEPVVEETKPA 502

Query: 693 KP 694
           +P
Sbjct: 503 RP 504

Length = 1355

>gnl|CDD|237864 PRK14950, PRK14950, DNA polymerase III subunits gamma and tau; Provisional

 Score = 42.9 bits (101), Expect = 0.001
 Identities = 27/94 (28%), Positives = 31/94 (32%), Gaps = 16/94 (17%)

Query: 607 ELLLPPKPEPEILLPPKPEPELLLPPKPEPEILLPPKPEPELLLPPKPESELLLPLKPEP 666
           E LL P P P    P KP      P +P P     PK      +PPK          P  
Sbjct: 357 EALLVPVPAP---QPAKPTAAAPSPVRPTPAPSTRPKAAAAANIPPKE---------PVR 404

Query: 667 EILLPPKPEPELLLPPKPEPELLLPPKPETITTT 700
           E   PP   P  + PP P      P     +T  
Sbjct: 405 ETATPPPVPPRPVAPPVPHT----PESAPKLTRA 434

Length = 585

>gnl|CDD|236766 PRK10811, rne, ribonuclease E; Reviewed

 Score = 42.7 bits (101), Expect = 0.001
 Identities = 39/182 (21%), Positives = 57/182 (31%), Gaps = 20/182 (10%)

Query: 315  VPEPTKSQLPEVPEPTKPQ-LPEVLEPTTLQLPEDPEPTKPQLPEDPEPTKPQLPEVPEP 373
            V  P   Q+ E  E  + Q  P V E       E              P    + EV E 
Sbjct: 847  VVRPQDVQVEEQREAEEVQVQPVVAEVPVAAAVEPVVS---------APVVEAVAEVVEE 897

Query: 374  TKPQLPEVLEPTKLQLPEDPEPTKPQLPEDPETTKPQLPEVPEPTKLQLPEVPEPTKPEL 433
                 P V+   + +     E T P++   P T +PQ+  + E       EV E  +P +
Sbjct: 898  -----PVVVAEPQPEEVVVVETTHPEVIAAPVTEQPQV--ITESDVAVAQEVAEHAEPVV 950

Query: 434  PEVPELTKTQLPEVPEPTKPQILDKKEPVLLDKKEPVLLDKKEPVLPPKPEPEILLPPKP 493
                E    +       T   ++ + E V       V     E       EPE+     P
Sbjct: 951  EPQDETADIE---EAAETAEVVVAEPEVVAQPAAPVVAEVAAEVETVTAVEPEVAPAQVP 1007

Query: 494  EP 495
            E 
Sbjct: 1008 EA 1009

Length = 1068

>gnl|CDD|114603 pfam05887, Trypan_PARP, Procyclic acidic repetitive protein (PARP)

 Score = 40.7 bits (94), Expect = 0.001
 Identities = 25/63 (39%), Positives = 32/63 (50%)

Query: 604 PEPELLLPPKPEPEILLPPKPEPELLLPPKPEPEILLPPKPEPELLLPPKPESELLLPLK 663
           P+ E     +PEPE     +PEPE     +PEPE     +PEPE    P+PE E     +
Sbjct: 60  PDDEPEEEEEPEPEEEGEEEPEPEEEGEEEPEPEETGEEEPEPEPEPEPEPEPEPEPEPE 119

Query: 664 PEP 666
           PEP
Sbjct: 120 PEP 122

This family consists of several Trypanosoma brucei procyclic acidic repetitive protein (PARP) like sequences. The procyclic acidic repetitive protein (parp) genes of Trypanosoma brucei encode a small family of abundant surface proteins whose expression is restricted to the procyclic form of the parasite. They are found at two unlinked loci, parpA and parpB; transcription of both loci is developmentally regulated. Length = 145

>gnl|CDD|114603 pfam05887, Trypan_PARP, Procyclic acidic repetitive protein (PARP)

 Score = 40.3 bits (93), Expect = 0.001
 Identities = 26/63 (41%), Positives = 33/63 (52%)

Query: 624 PEPELLLPPKPEPEILLPPKPEPELLLPPKPESELLLPLKPEPEILLPPKPEPELLLPPK 683
           P+ E     +PEPE     +PEPE     +PE E     +PEPE    P+PEPE    P+
Sbjct: 60  PDDEPEEEEEPEPEEEGEEEPEPEEEGEEEPEPEETGEEEPEPEPEPEPEPEPEPEPEPE 119

Query: 684 PEP 686
           PEP
Sbjct: 120 PEP 122

This family consists of several Trypanosoma brucei procyclic acidic repetitive protein (PARP) like sequences. The procyclic acidic repetitive protein (parp) genes of Trypanosoma brucei encode a small family of abundant surface proteins whose expression is restricted to the procyclic form of the parasite. They are found at two unlinked loci, parpA and parpB; transcription of both loci is developmentally regulated. Length = 145

>gnl|CDD|223039 PHA03307, PHA03307, transcriptional regulator ICP4; Provisional

 Score = 42.9 bits (101), Expect = 0.001
 Identities = 26/167 (15%), Positives = 32/167 (19%), Gaps = 9/167 (5%)

Query: 520 PPKSEPELLLPPKPEPELLLPPKPKPELLLPPKPEPEKLLLPPKPKPKLLLPPKPESELL 579
           PP          +                   +  P     PP P      PP       
Sbjct: 71  PPPGPGTEAPANESRSTPTWSLSTLAPASPAREGSPT----PPGPSSPDP-PPPTPPPAS 125

Query: 580 LPPKPEPELIIPPKPEPEILIPPKPEPELLLPPKPEPEILLPPKPEPELLLPPKPEPEIL 639
            PP P P+L    +P      PP   P                  +  L L    E    
Sbjct: 126 PPPSPAPDLSEMLRPVGSPGPPPAASPPAAGASPAAVASDAASSRQAALPLSSPEETA-- 183

Query: 640 LPPKPEPELLLPPKPESELLLPLKPEP-EILLPPKPEPELLLPPKPE 685
                 P    PP        P  P     +      P         
Sbjct: 184 -RAPSSPPAEPPPSTPPAAASPRPPRRSSPISASASSPAPAPGRSAA 229

Length = 1352

>gnl|CDD|236138 PRK07994, PRK07994, DNA polymerase III subunits gamma and tau; Validated

 Score = 42.9 bits (102), Expect = 0.001
 Identities = 30/152 (19%), Positives = 41/152 (26%), Gaps = 8/152 (5%)

Query: 346 PEDPEPTKPQLPEDPEPTKPQLPEVPEPTKPQLPEVLEPTKLQLPEDPEPTKPQLPEDPE 405
              P+   P                P+      P    P +      PE T   L    +
Sbjct: 369 EVPPQSAAPAASAQATAAPTAAVAPPQAPAVPPPPASAPQQAPAVPLPETTSQLLAARQQ 428

Query: 406 TTKPQLPEVPEPTKLQLPEVPEPTKPELPEVPELTKTQLPEVPEPTKPQILDKKEPVLLD 465
             + Q     + ++        P    L  +  +          P       KKE     
Sbjct: 429 LQRAQGATKAKKSEPAAASRARPVNSALERLASVRPAPSALEKAP------AKKEAYRWK 482

Query: 466 KKEPVLLDKKEPVLPPKPEPEILLPPKPEPEL 497
              PV   KKEPV  PK   + L   K  PEL
Sbjct: 483 ATNPV-EVKKEPVATPKALKKALEHEK-TPEL 512

Length = 647

>gnl|CDD|237865 PRK14951, PRK14951, DNA polymerase III subunits gamma and tau; Provisional

 Score = 42.4 bits (100), Expect = 0.001
 Identities = 20/133 (15%), Positives = 26/133 (19%), Gaps = 3/133 (2%)

Query: 559 LLPPKPKPKLLLPPKPESELLLPPKPEPELIIPPKPEPEILIPPKPEPELLLPPKPEPEI 618
           LL  KP          E +    P+       P         P          P   P  
Sbjct: 361 LLAFKPAAAAEAAAPAEKKTPARPEAAAPAAAPVAQAAAAPAPAAAPAAAASAPAAPPAA 420

Query: 619 LLPPKPEPELLLPPKPEPEILLPPKPEPELLLPPKPESELLLPLKPEPEILLPPKPEPEL 678
             P          P   P                     + +P++  PE   P       
Sbjct: 421 APPAPVAAPAAAAPAAAPAAAPAAVALAPAPPAQAAPETVAIPVRVAPE---PAVASAAP 477

Query: 679 LLPPKPEPELLLP 691
                P    L P
Sbjct: 478 APAAAPAAARLTP 490

Length = 618

>gnl|CDD|217393 pfam03154, Atrophin-1, Atrophin-1 family

 Score = 42.0 bits (98), Expect = 0.002
 Identities = 50/203 (24%), Positives = 69/203 (33%), Gaps = 17/203 (8%)

Query: 496 ELLLPPKPEPELLLPPKLEPKLLLPPKSEPELLLPPKPEPELLLPPKPKPELLLP----- 550
           + LL P+  P + +PP        PP +     +PP+  P    P     +         
Sbjct: 170 QQLLQPQGPPSIQVPPGAALAPSAPPPTPSAQAVPPQGSPIAAQPAPQPQQPSPLSLISA 229

Query: 551 PKPEPEKLLLPPKPKPKLLLPPKPESELLLPPKPEPELIIPPKPEPEILIPPKPEPELLL 610
           P   P++L  P  P    L P     +   PP P           P    PP P      
Sbjct: 230 PSLHPQRLPSPHPP----LQPQTASQQSPQPPAPSSRHPQSSHHGP---GPPMPHALQQG 282

Query: 611 PPKPEPEILLPPKPEPELLLPPKPEPEILLPPKPEPELLLPPKPESELLLPLKPEPEILL 670
           P   +     PP+P     L     P + LP + +P    PP      L P +P  E  L
Sbjct: 283 PVFLQHPSSNPPQPFG---LAQSQVPPLPLPSQAQPHSHTPPSQS--ALQPQQPPREQPL 337

Query: 671 PPKPEPELLLPPKPEPELLLPPK 693
           PP P    + PP   P   LP +
Sbjct: 338 PPAPSMPHIKPPPTTPIPQLPNQ 360

Atrophin-1 is the protein product of the dentatorubral-pallidoluysian atrophy (DRPLA) gene. DRPLA OMIM:125370 is a progressive neurodegenerative disorder. It is caused by the expansion of a CAG repeat in the DRPLA gene on chromosome 12p. This results in an extended polyglutamine region in atrophin-1, that is thought to confer toxicity to the protein, possibly through altering its interactions with other proteins. The expansion of a CAG repeat is also the underlying defect in six other neurodegenerative disorders, including Huntington's disease. One interaction of expanded polyglutamine repeats that is thought to be pathogenic is that with the short glutamine repeat in the transcriptional coactivator CREB binding protein, CBP. This interaction draws CBP away from its usual nuclear location to the expanded polyglutamine repeat protein aggregates that are characteristic of the polyglutamine neurodegenerative disorders. This interferes with CBP-mediated transcription and causes cytotoxicity. Length = 979

>gnl|CDD|235124 PRK03427, PRK03427, cell division protein ZipA; Provisional

 Score = 41.6 bits (98), Expect = 0.002
 Identities = 25/149 (16%), Positives = 43/149 (28%), Gaps = 14/149 (9%)

Query: 284 GEPEVQTPIVPEPTKQELPEVPETTKPQLPEVPEPTKSQLPEVPEPTKPQLPEVLEPTTL 343
           G  EV+   V         +  E  +P      +P  +         +P   +V      
Sbjct: 62  GVGEVRVHRVNHAPAN--AQEHEAARPSPQHQYQPPYASAQPRQPVQQPPEAQVPPQHAP 119

Query: 344 QLPEDPEPTKPQLPEDPEPTKPQLPEVPEPTKPQLPEVLEPTKLQLPEDPEPTKPQLPED 403
           +  +       Q    P+P +P    V     P    V           P+P +      
Sbjct: 120 RPAQPAPQPVQQPAYQPQPEQPLQQPVSPQVAPAPQPV--------HSAPQPAQQAF--- 168

Query: 404 PETTKPQLPEVPEPTKLQLPEVPEPTKPE 432
            +  +P     PEP     P + +P + E
Sbjct: 169 -QPAEPVAAPQPEPVAEPAPVMDKPKRKE 196

Length = 333

>gnl|CDD|237057 PRK12323, PRK12323, DNA polymerase III subunits gamma and tau; Provisional

 Score = 42.2 bits (99), Expect = 0.002
 Identities = 29/181 (16%), Positives = 37/181 (20%), Gaps = 8/181 (4%)

Query: 480 PPKPEPEILLPPKPEPELLLPPKPEPELLLPPKLEPKLLLPPKSEPELLLPPKPEPELLL 539
           P    P    P    P       P                 P  E               
Sbjct: 387 PAAAAPAAAAPAPAAPPAAPAAAPAAAAAARAVAAAPARRSPAPEALAAARQASARGPGG 446

Query: 540 PPKPKPELLLPPKPEPEKLLLPPKPKPKLLLPPKPESELLLPPKPEPELIIPPKPEPEIL 599
            P P P     P          P+P           +     P P  +   P +  P   
Sbjct: 447 APAPAPAPAAAPAAAARPAAAGPRPVAAAAAAAPARAAPAAAPAPADDDPPPWEELPPEF 506

Query: 600 IPPKPEPELLLPPK------PEPEILLPPKPEPELLLPPKPEPEILLPPKPEPELLLPPK 653
             P P      P        P+P    P      L   P   P          E ++ P+
Sbjct: 507 ASPAPAQPDAAPAGWVAESIPDPATADPDDAFETLAPAPAAAP--APRAAAATEPVVAPR 564

Query: 654 P 654
           P
Sbjct: 565 P 565

Length = 700

>gnl|CDD|236940 PRK11633, PRK11633, cell division protein DedD; Provisional

 Score = 40.8 bits (96), Expect = 0.002
 Identities = 26/108 (24%), Positives = 41/108 (37%), Gaps = 5/108 (4%)

Query: 291 PIVPEPTKQELPEVPETTKPQLPEVPEPTKSQLPEVPEPTKPQLPEVLEPTTLQLPEDPE 350
           P+VP+P  ++ P++       LP  P    ++     +   P     L+P T+  P  P 
Sbjct: 42  PLVPKPGDRDEPDMMPAATQALPTQPPEGAAEAVRAGDAAAP----SLDPATVAPPNTPV 97

Query: 351 PTKPQLPEDPEPTKPQLPEVPEPTKPQLPEVLEPTKLQLPEDPEPTKP 398
             +P   E P+P KP     P+P   Q  E     K +     E    
Sbjct: 98  EPEPAPVEPPKP-KPVEKPKPKPKPQQKVEAPPAPKPEPKPVVEEKAA 144

Length = 226

>gnl|CDD|237874 PRK14971, PRK14971, DNA polymerase III subunits gamma and tau; Provisional

 Score = 41.7 bits (98), Expect = 0.002
 Identities = 24/136 (17%), Positives = 41/136 (30%), Gaps = 11/136 (8%)

Query: 328 EPTKPQLPEVLEPTTLQLP---EDPEPTKPQLPEDPEPTKPQLPEVPEPTKPQLPEVLEP 384
            P +   P   +P     P       P+  Q     +P+ PQ    P  T P +      
Sbjct: 374 GPKQHIKPVFTQPAAAPQPSAAAAASPSPSQSSAAAQPSAPQSATQPAGTPPTVSV---- 429

Query: 385 TKLQLPEDPEPTKPQLPEDPETTKPQLPEVPEPTKLQLPEVPEPTKPELPEVPELTKTQL 444
                P    P  P           Q  E  +    ++  +   T   + E  E     +
Sbjct: 430 ----DPPAAVPVNPPSTAPQAVRPAQFKEEKKIPVSKVSSLGPSTLRPIQEKAEQATGNI 485

Query: 445 PEVPEPTKPQILDKKE 460
            E P  T+ +I  +++
Sbjct: 486 KEAPTGTQKEIFTEED 501

Length = 614

>gnl|CDD|114603 pfam05887, Trypan_PARP, Procyclic acidic repetitive protein (PARP)

 Score = 39.2 bits (90), Expect = 0.003
 Identities = 25/80 (31%), Positives = 35/80 (43%)

Query: 466 KKEPVLLDKKEPVLPPKPEPEILLPPKPEPELLLPPKPEPELLLPPKLEPKLLLPPKSEP 525
           K E       +      P+ E     +PEPE     +PEPE     + EP+     + EP
Sbjct: 43  KGEKGTKVGADDTNGTDPDDEPEEEEEPEPEEEGEEEPEPEEEGEEEPEPEETGEEEPEP 102

Query: 526 ELLLPPKPEPELLLPPKPKP 545
           E    P+PEPE    P+P+P
Sbjct: 103 EPEPEPEPEPEPEPEPEPEP 122

This family consists of several Trypanosoma brucei procyclic acidic repetitive protein (PARP) like sequences. The procyclic acidic repetitive protein (parp) genes of Trypanosoma brucei encode a small family of abundant surface proteins whose expression is restricted to the procyclic form of the parasite. They are found at two unlinked loci, parpA and parpB; transcription of both loci is developmentally regulated. Length = 145

>gnl|CDD|114603 pfam05887, Trypan_PARP, Procyclic acidic repetitive protein (PARP)

 Score = 39.2 bits (90), Expect = 0.003
 Identities = 23/63 (36%), Positives = 32/63 (50%)

Query: 493 PEPELLLPPKPEPELLLPPKLEPKLLLPPKSEPELLLPPKPEPELLLPPKPKPELLLPPK 552
           P+ E     +PEPE     + EP+     + EPE     +PEPE    P+P+PE    P+
Sbjct: 60  PDDEPEEEEEPEPEEEGEEEPEPEEEGEEEPEPEETGEEEPEPEPEPEPEPEPEPEPEPE 119

Query: 553 PEP 555
           PEP
Sbjct: 120 PEP 122

This family consists of several Trypanosoma brucei procyclic acidic repetitive protein (PARP) like sequences. The procyclic acidic repetitive protein (parp) genes of Trypanosoma brucei encode a small family of abundant surface proteins whose expression is restricted to the procyclic form of the parasite. They are found at two unlinked loci, parpA and parpB; transcription of both loci is developmentally regulated. Length = 145

>gnl|CDD|236768 PRK10819, PRK10819, transport protein TonB; Provisional

 Score = 40.4 bits (95), Expect = 0.003
 Identities = 33/95 (34%), Positives = 46/95 (48%), Gaps = 13/95 (13%)

Query: 510 PPKLEPKLLLPPKSEPELLLPPKPEPELLLPPKPKPELLLPPKPEPEKLLLPPKPKPKLL 569
           P  LEP   + P  EP +   P+PEP +  PPK  P ++  P+P+P+     PKPKPK  
Sbjct: 55  PADLEPPQAVQPPPEPVVEPEPEPEP-IPEPPKEAPVVIPKPEPKPK-----PKPKPK-- 106

Query: 570 LPPKPESELLLPPKPEPELIIPPKPEPEILIPPKP 604
             PKP  ++   PK E +   P +P P        
Sbjct: 107 --PKPVKKVEEQPKREVK---PVEPRPASPFENTA 136

Length = 246

>gnl|CDD|237865 PRK14951, PRK14951, DNA polymerase III subunits gamma and tau; Provisional

 Score = 41.2 bits (97), Expect = 0.003
 Identities = 22/136 (16%), Positives = 27/136 (19%), Gaps = 17/136 (12%)

Query: 283 PGEPEVQTPIVPEPTKQELPEVPETTKPQLPEVPEPTKSQLPEVPEPTKPQLPEVLEPTT 342
               E +TP  PE        V +      P       +  P  P    P          
Sbjct: 373 AAPAEKKTPARPEAAAPAAAPVAQAAAAPAPAAAPAAAASAPAAPPAAAP---------- 422

Query: 343 LQLPEDPEPTKPQLPEDPEPTKPQLPE-VPEPTKPQLPEVLEPTKLQLPEDPEPTKPQLP 401
                 P P        P       P  V     P      E   + +   PEP      
Sbjct: 423 ------PAPVAAPAAAAPAAAPAAAPAAVALAPAPPAQAAPETVAIPVRVAPEPAVASAA 476

Query: 402 EDPETTKPQLPEVPEP 417
             P          P  
Sbjct: 477 PAPAAAPAAARLTPTE 492

Length = 618

>gnl|CDD|237057 PRK12323, PRK12323, DNA polymerase III subunits gamma and tau; Provisional

 Score = 41.4 bits (97), Expect = 0.003
 Identities = 29/192 (15%), Positives = 38/192 (19%), Gaps = 13/192 (6%)

Query: 510 PPKLEPKLLLPPKSEPELLLPPKPEPELLLPPKPKPELLLPPKPEPEKLLLPPKPKPKLL 569
                P     P +       P P      P                       P P+ L
Sbjct: 376 TAAAAPVAQPAPAAAAPAAAAPAPAAPPAAPAAAPAAA--AAARAVAAAPARRSPAPEAL 433

Query: 570 LPPKPESELLLPPKPEPELIIPPKPEPEI---LIPPKPEPELLLPPKPEPEILLPPKPEP 626
              +  S       P P       P          P+P                 P P  
Sbjct: 434 AAARQASARGPGGAPAPAPAPAAAPAAAARPAAAGPRPVAAAAAAAPARAAPAAAPAPAD 493

Query: 627 ELLLPPKPEPEILLPPKPEPELLLPPKPESELLLPLKPEPEILLPPKPEPELLLPPK--- 683
           +   P +  P     P P      P    +E +    P+P    P      L   P    
Sbjct: 494 DDPPPWEELPPEFASPAPAQPDAAPAGWVAESI----PDPATADPDDAFETLAPAPAAAP 549

Query: 684 -PEPELLLPPKP 694
            P       P  
Sbjct: 550 APRAAAATEPVV 561

Length = 700

>gnl|CDD|236940 PRK11633, PRK11633, cell division protein DedD; Provisional

 Score = 40.4 bits (95), Expect = 0.003
 Identities = 35/111 (31%), Positives = 51/111 (45%), Gaps = 15/111 (13%)

Query: 549 LPPKP--EPEKLLLPPKPKPKLLLPPKPESELLLPPKPEPELIIPPKPEPEILIPPKPEP 606
           L PKP    E  ++P   +     PP+  +E +         + P    P    P +PEP
Sbjct: 43  LVPKPGDRDEPDMMPAATQALPTQPPEGAAEAVRAGDAAAPSLDPATVAPP-NTPVEPEP 101

Query: 607 ELLLPPKPEPEILLPPKPEPELLLPPKPEPEILLPPKPEPELLLPPKPESE 657
             + PPKP+P      KP+P+    PKP+ ++  PP P+PE    PKP  E
Sbjct: 102 APVEPPKPKPV----EKPKPK----PKPQQKVEAPPAPKPE----PKPVVE 140

Length = 226

>gnl|CDD|237864 PRK14950, PRK14950, DNA polymerase III subunits gamma and tau; Provisional

 Score = 40.9 bits (96), Expect = 0.004
 Identities = 29/100 (29%), Positives = 36/100 (36%), Gaps = 4/100 (4%)

Query: 597 EILIPPKPEPELLLPPKPEPEILLPPKPEPELLLPPKPEPEILLPPK-PEPELLLPPKPE 655
           E L+ P P P    P KP      P +P P     PK      +PPK P  E   PP   
Sbjct: 357 EALLVPVPAP---QPAKPTAAAPSPVRPTPAPSTRPKAAAAANIPPKEPVRETATPPPVP 413

Query: 656 SELLLPLKPEPEILLPPKPEPELLLPPKPEPELLLPPKPE 695
              + P  P      P      + +  KP+     PPK E
Sbjct: 414 PRPVAPPVPHTPESAPKLTRAAIPVDEKPKYTPPAPPKEE 453

Length = 585

>gnl|CDD|114603 pfam05887, Trypan_PARP, Procyclic acidic repetitive protein (PARP)

 Score = 38.8 bits (89), Expect = 0.004
 Identities = 26/67 (38%), Positives = 33/67 (49%)

Query: 634 PEPEILLPPKPEPELLLPPKPESELLLPLKPEPEILLPPKPEPELLLPPKPEPELLLPPK 693
           P+ E     +PEPE     +PE E     +PEPE     +PEPE    P+PEPE    P+
Sbjct: 60  PDDEPEEEEEPEPEEEGEEEPEPEEEGEEEPEPEETGEEEPEPEPEPEPEPEPEPEPEPE 119

Query: 694 PETITTT 700
           PE    T
Sbjct: 120 PEPGAAT 126

This family consists of several Trypanosoma brucei procyclic acidic repetitive protein (PARP) like sequences. The procyclic acidic repetitive protein (parp) genes of Trypanosoma brucei encode a small family of abundant surface proteins whose expression is restricted to the procyclic form of the parasite. They are found at two unlinked loci, parpA and parpB; transcription of both loci is developmentally regulated. Length = 145

>gnl|CDD|221309 pfam11912, DUF3430, Protein of unknown function (DUF3430)

 Score = 39.8 bits (93), Expect = 0.004
 Identities = 22/115 (19%), Positives = 33/115 (28%), Gaps = 14/115 (12%)

Query: 989  EIGQNYYFHQNQSQNYYYHQNLSQNYYYHQNLSLKYYCRRNLSQNYYCHQNQSPNNYYYH 1048
            EIG   Y        Y Y  + + +     N SL             C  N +     Y 
Sbjct: 96   EIGSCVYSSSYSGSYYSYISSCTDSPEIPSN-SLVTV----YYNGSDC-SNDNFLYIEYF 149

Query: 1049 LNLSQNYYFHQNQSQNYYYHQNLSQNYYYH------QNLSLKYYCRRNLSQNYYC 1097
             N +     +   S  YY +   +Q Y  +       N  +   C +N      C
Sbjct: 150  TN-NTCINNNNGFSFTYYCNST-NQPYTTYCKSSNCNNSPITLSCSQNNPFKNTC 202

This family of proteins are functionally uncharacterized. This protein is found in eukaryotes. Proteins in this family are typically between 209 to 265 amino acids in length. Length = 204

>gnl|CDD|237057 PRK12323, PRK12323, DNA polymerase III subunits gamma and tau; Provisional

 Score = 41.0 bits (96), Expect = 0.004
 Identities = 27/171 (15%), Positives = 34/171 (19%), Gaps = 10/171 (5%)

Query: 477 PVLPPKPEPEILLPPKPEPELLLPPKPEPELLLPPKLEPKLLLPPKSEPELLLPPKP--- 533
           P   P   P      +          P PE L   +            P       P   
Sbjct: 402 PPAAPAAAPAAAAAARAVAAAPARRSPAPEALAAARQASARGPGGAPAPAPAPAAAPAAA 461

Query: 534 EPELLLPPKPKPELLLPPKPEPEKLLLPPKPKPKLLLPPKPESELLLPPKPEPELIIPPK 593
                  P+P                    P P    PP  E        P P       
Sbjct: 462 ARPAAAGPRPVAAAAAAAPARAAP---AAAPAPADDDPPPWEELPPEFASPAPAQPDAAP 518

Query: 594 PEPEILIPPKPEPELLLPPKPEPEILLPPKPEPELLLPPKPEPEILLPPKP 644
                     P+P    P        L P P            E ++ P+P
Sbjct: 519 AGWV--AESIPDPATADPDDAFET--LAPAPAAAPAPRAAAATEPVVAPRP 565

Length = 700

>gnl|CDD|236940 PRK11633, PRK11633, cell division protein DedD; Provisional

 Score = 40.0 bits (94), Expect = 0.004
 Identities = 35/109 (32%), Positives = 46/109 (42%), Gaps = 9/109 (8%)

Query: 479 LPPKP--EPEI-LLPPKPEPELLLPPKPEPELLLPPKLEPKLLLPPKSEPELLLPPKPEP 535
           L PKP    E  ++P   +     PP+   E +         L P    P    P +PEP
Sbjct: 43  LVPKPGDRDEPDMMPAATQALPTQPPEGAAEAVRAGDAAAPSLDPATVAPPNT-PVEPEP 101

Query: 536 ELLLPPKPKPELLLPPKPEPEKLLLP-PKPKPKLLLPPKPESELLLPPK 583
             + PPKPKP     PKP+P++ +   P PKP     PKP  E    P 
Sbjct: 102 APVEPPKPKPVEKPKPKPKPQQKVEAPPAPKP----EPKPVVEEKAAPT 146

Length = 226

>gnl|CDD|234450 TIGR04056, OMP_RagA_SusC, TonB-linked outer membrane protein, SusC/RagA family

 Score = 41.0 bits (97), Expect = 0.004
 Identities = 46/309 (14%), Positives = 99/309 (32%), Gaps = 53/309 (17%)

Query: 961  PPVLNPPNSELVYKDKYTGVGGYFGAV--PEIGQNYYFHQNQSQ--NYYYHQNLSQNYYY 1016
            P +LN      +Y +     G     +   E  + Y    +     N  +   + +   +
Sbjct: 228  PEMLNAYEYAELYNEARLNRGLSPPDLYTDEEIEAYRNGLDPDLYPNTDWQDEIFKRTAF 287

Query: 1017 HQ--NLSL-------KYYCRRNLSQNYYCHQNQS---PNNYY--YHLNLSQNY----YFH 1058
            +Q  NLS+       +YY    +S  YY   N+     N+ Y  Y+   + +        
Sbjct: 288  NQRHNLSVSGGTEKARYY----VSLGYY---NEEGILKNSDYKRYNFRANIDAKLTKTLK 340

Query: 1059 QNQSQNYYYHQNLSQNYYYHQNLSLKYYCRRNLSQNYYCHQNQSQNYYYHQNQSQNYYYH 1118
             + + +    +  +       +              Y      S  YY           +
Sbjct: 341  LSLNVSGSLSKYNNPGGST--SNIWNALMLFPRGTPYSTPPYYSDGYYPAYGSGNTSLQN 398

Query: 1119 --------QNQSQKYYYHQNLSQNYYYHQNLSQ----NYYCHQNQSQNYYYHQNQSQKYY 1166
                     N++++   + N S      + L      +Y     +++ YY        YY
Sbjct: 399  PYALLNRGYNENERNRLNANASLEQKITKGLKLKGTFSYDYSNYKNEKYYP----KPYYY 454

Query: 1167 YHQNLSQNCYYHQNRSQNYYYHQNLSQNYYYHQNQSQKNYYYHLNLSQNYYYHQNLSQNY 1226
                 + N YY ++ S++  Y+   + NY    N++     ++++    Y   +N S +Y
Sbjct: 455  NATGGANNGYYSESNSRSRNYYLEATLNY----NRTFGK--HNVSALLGYEQQENKSSSY 508

Query: 1227 YYHQNSFTS 1235
                +   +
Sbjct: 509  GGLLDDLPN 517

This model describes a distinctive clade among the TonB-linked outer membrane proteins (OMP). Members of this family are restricted to the Bacteriodetes lineage (except for Gemmatimonas aurantiaca T-27 from the novel phylum Gemmatimonadetes) and occur in high copy numbers, with over 100 members from Bacteroides thetaiotaomicron VPI-5482 alone. Published descriptions of members of this family are available for RagA from Porphyromonas gingivalis, SusC from Bacteroides thetaiotaomicron, and OmpW from Bacteroides caccae. Members form pairs with members of the SusD/RagB family (pfam07980). Transporter complexes including these outer membrane proteins are likely to import large degradation products of proteins (e.g. RagA) or carbohydrates (e.g. SusC) as nutrients, rather than siderophores [Transport and binding proteins, Unknown substrate]. Length = 982

>gnl|CDD|114045 pfam05297, Herpes_LMP1, Herpesvirus latent membrane protein 1 (LMP1)

 Score = 40.8 bits (95), Expect = 0.004
 Identities = 21/64 (32%), Positives = 31/64 (48%)

Query: 390 PEDPEPTKPQLPEDPETTKPQLPEVPEPTKLQLPEVPEPTKPELPEVPELTKTQLPEVPE 449
           P+DP+ T    P+DP+ T    P+ P+ T    P+ P+ T    P+ P+ T    P  P 
Sbjct: 253 PQDPDNTDDNGPQDPDNTDDNGPQDPDNTDDNGPQDPDNTADNGPQDPDNTDDNGPHDPL 312

Query: 450 PTKP 453
           P  P
Sbjct: 313 PHNP 316

This family consists of several latent membrane protein 1 or LMP1s mostly from Epstein-Barr virus. LMP1 of EBV is a 62-65 kDa plasma membrane protein possessing six membrane spanning regions, a short cytoplasmic N-terminus and a long cytoplasmic carboxy tail of 200 amino acids. EBV latent membrane protein 1 (LMP1) is essential for EBV-mediated transformation and has been associated with several cases of malignancies. EBV-like viruses in Cynomolgus monkeys (Macaca fascicularis) have been associated with high lymphoma rates in immunosuppressed monkeys. Length = 382

>gnl|CDD|185628 PTZ00449, PTZ00449, 104 kDa microneme/rhoptry antigen; Provisional

 Score = 40.8 bits (95), Expect = 0.004
 Identities = 71/248 (28%), Positives = 105/248 (42%), Gaps = 41/248 (16%)

Query: 299 QELPEVPETTKPQLPEVPEPTKSQLPEVPEPTKPQLPEVLEPTTLQLPEDPEPTKPQLPE 358
           +E  E  E  KP   +  E  K      P P K   P  + PT  + PE P+   P+ P+
Sbjct: 538 KESDEPKEGGKPGETKEGEVGKK-----PGPAKEHKPSKI-PTLSKKPEFPK--DPKHPK 589

Query: 359 DPE-PTKPQLPEVPE-PTKPQLPEVLEPTKLQLPEDPEPTKPQLPEDPETTKPQLPEVPE 416
           DPE P KP+ P   + PT+P+ P++ E   +       P  P+ PE P    P+ P  P 
Sbjct: 590 DPEEPKKPKRPRSAQRPTRPKSPKLPELLDI-------PKSPKRPESP--KSPKRP--PP 638

Query: 417 PTKLQLPEVPEPTKPELPEVPELTKT-QLPEVPE-PTKPQILDKKEPVLLDK-------K 467
           P +        P+ PE PE P++ K+ + P+ P+ P  P+  +K     LD        K
Sbjct: 639 PQR--------PSSPERPEGPKIIKSPKPPKSPKPPFDPKFKEKFYDDYLDAAAKSKETK 690

Query: 468 EPVLLDKKEPVLPPKPEPEILLPPKPEPELLLPPKP-EPELLLPPKLEPKLLLPPKSEPE 526
             V+LD+    +  +  PE    P   P  L P  P + E    P  +P        + E
Sbjct: 691 TTVVLDESFESILKETLPETPGTPFTTPRPLPPKLPRDEEFPFEPIGDPD--AEQPDDIE 748

Query: 527 LLLPPKPE 534
              PP+ E
Sbjct: 749 FFTPPEEE 756

Length = 943

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	1235
PHA03247	3151	large tegument protein UL36; Provisional	98.97
PHA03247	3151	large tegument protein UL36; Provisional	98.95
KOG3671|consensus	569		95.72
KOG3671|consensus	569		94.2
KOG1924|consensus	1102		91.29
PTZ00491	850	major vault protein; Provisional	91.21
PTZ00491	850	major vault protein; Provisional	80.62

>PHA03247 large tegument protein UL36; Provisional

Probab=98.97  E-value=2.3e-05  Score=103.71  Aligned_cols=24  Identities=17%  Similarity=-0.017  Sum_probs=16.4

Q ss_pred             hhhhcccccccc-----------cccCccceeece
Q psy14307        141 QQKETANVNSAD-----------LVNNRENVVKPV  164 (1235)
Q Consensus       141 q~~~~~~v~~~~-----------~~~~~~~~~k~~  164 (1235)
                      ||+|-+=-|.++           |+|.+-+.+|+-
T Consensus      2377 ~QLe~LSaLiAsKPLa~aPPCLvlvD~~m~p~~VL 2411 (3151)
T PHA03247       2377 AQLPALSALIAARPLARSPPCLVLVDISMAPLFVL 2411 (3151)
T ss_pred             HHHHHHHHHHhcCcccCCCCeEEEEcCCCceeEEe
Confidence            777766655555           777777777764

>PHA03247 large tegument protein UL36; Provisional

Probab=98.95  E-value=2.2e-05  Score=103.81  Aligned_cols=13  Identities=31%  Similarity=0.503  Sum_probs=5.9

Q ss_pred             CCCCCCCCCCCCC
Q psy14307        279 DLKKPGEPEVQTP  291 (1235)
Q Consensus       279 ~~~kp~~pKdqgP  291 (1235)
                      +.++++.+-.+.+
T Consensus      2471 ~~~y~~~p~f~~~ 2483 (3151)
T PHA03247       2471 GELFPGAPVYRRP 2483 (3151)
T ss_pred             cccCCCCccccCC
Confidence            3444455444443

>KOG3671|consensus

Probab=95.72  E-value=0.27  Score=59.11  Aligned_cols=8  Identities=13%  Similarity=0.069  Sum_probs=4.6

Q ss_pred             eeeccccc
Q psy14307         39 VAYGTDIT   46 (1235)
Q Consensus        39 ~~~~~~~~   46 (1235)
                      .|+++|..
T Consensus        66 l~lVkD~~   73 (569)
T KOG3671|consen   66 LCLVKDNA   73 (569)
T ss_pred             EEEeeccc
Confidence            46666653

>KOG3671|consensus

Probab=94.20  E-value=1.5  Score=53.14  Aligned_cols=7  Identities=71%  Similarity=1.004  Sum_probs=3.3

Q ss_pred             cceeeee
Q psy14307         35 VQTYVAY   41 (1235)
Q Consensus        35 ~~~~~~~   41 (1235)
                      ||.|++|
T Consensus        45 VqLY~a~   51 (569)
T KOG3671|consen   45 VQLYKAY   51 (569)
T ss_pred             HHHHhhc
Confidence            4444444

>KOG1924|consensus

Probab=91.29  E-value=1.3  Score=55.98  Aligned_cols=8  Identities=50%  Similarity=0.646  Sum_probs=2.9

Q ss_pred             hhhhhhcc
Q psy14307         18 FLKPFLLM   25 (1235)
Q Consensus        18 ~~~~~l~~   25 (1235)
                      ++.+|++|
T Consensus        88 ~~~~F~~~   95 (1102)
T KOG1924|consen   88 VLELFELM   95 (1102)
T ss_pred             HHHHHHHH
Confidence            33333333

>PTZ00491 major vault protein; Provisional

Probab=91.21  E-value=1.2  Score=56.75  Aligned_cols=153  Identities=14%  Similarity=0.166  Sum_probs=70.4

Q ss_pred             cccccccceeccCC--CcccccCCCceeeccCCceeecCCcceeecC------------------CCceeecCCCceee-
Q psy14307        759 VLLDKKERVLLDKK--EPVLLDKKEPVLLDKKEHVLLDKKETVLLDK------------------KEPVLLDKKEPILL-  817 (1235)
Q Consensus       759 vV~de~E~Vv~de~--E~vv~deke~vv~~e~e~Vml~e~e~vv~~~------------------~e~v~l~~~ep~vl-  817 (1235)
                      +.+..|+..|++-.  +.++.+-.+-|+. ..+.+.|++.++++..+                  .+..||.-||-|.- 
T Consensus       241 v~RkaGerWLVtg~d~~~yIP~v~eeVv~-~r~~i~L~~~qyc~V~dPv~~~G~~~tG~~r~v~G~~SffLqpgEeL~~~  319 (850)
T PTZ00491        241 IARKAGEEWLVTHEDCPTHIPDVYEKLVA-TVNATHLSARQYCVILNPVGDDGHNRFGAKELRKGECSFFLQPGESLEGD  319 (850)
T ss_pred             EEeecCCeeEEeCCCccccCCCCceEEee-eEeeEEecCCceEEEECCccccCccccccEEEEecCccccCCCCCeeecC
Confidence            44444555555433  3444444444442 23455555555554444                  25555555555544 


Q ss_pred             cCCCCeeecCCCCeEeccCCCeEeccCCceeecCCCceEecCC-------CceEecCCCCeeecCCCceeecC-CCC-ee
Q psy14307        818 DKKEPVLLDKKEPVLLDKKSPVLLDKKGPVILDKKEPVLLDKK-------EPVLLDKKEPVLLDKKAPVLLDK-KEP-VL  888 (1235)
Q Consensus       818 ~~~~~Vvl~~k~pvvl~~k~~vvl~~k~p~v~e~~~~vvl~~k-------~pvv~~~~~~Vvl~~k~pvv~~~-k~~-Vv  888 (1235)
                      ..-.+.||.+.++|++.+..+..=+  +.+.++.|.--|++-.       .--|+..+..+.++..++|-+.+ +.+ |=
T Consensus       320 ki~~a~VL~e~EaLLl~A~~~f~d~--~gv~r~~Gdrwlv~GP~~YIP~~~v~VV~~R~aI~l~~NegVyVrD~kTgkvR  397 (850)
T PTZ00491        320 GIQDAYVLGEDEALLLRALETFTDE--DGVEREPGDRWLVHGPCEYIPPVLVEVVERRRRIPLDENEGIYVRNITTGEVR  397 (850)
T ss_pred             CccCceecCCcceeeeeeccccccc--cceeccCCceecccCCcccCCCCcEEEEEecccEecCCCCEEEEEECCCCcEE
Confidence            3333455555555555554332211  2255555555555521       12223334444455555543333 221 11


Q ss_pred             ccCCCceeecCCCceeeccCCchhhhh
Q psy14307        889 LDKKEPVLLDKKEPVLLDKKEPILFEK  915 (1235)
Q Consensus       889 l~~~~p~m~d~~~~v~l~~k~p~l~~~  915 (1235)
                      +-.|..|||...+-+.--.. |-.+++
T Consensus       398 vV~Gp~yML~pdEe~weK~l-p~~ve~  423 (850)
T PTZ00491        398 AVHGKPYMLGAHEELWEKPL-PPNVEE  423 (850)
T ss_pred             EEECCcccCCCCcEEEeccC-CHHHHH
Confidence            22345777777774443333 334443

>PTZ00491 major vault protein; Provisional

Probab=80.62  E-value=14  Score=47.89  Aligned_cols=84  Identities=17%  Similarity=0.090  Sum_probs=36.6

Q ss_pred             CeeecCCCCeEeccCCCeEeccCCceeecCCCceEecCCCceEecCCCCe-------eecCCCceeecCCCCeeccCCCc
Q psy14307        822 PVLLDKKEPVLLDKKSPVLLDKKGPVILDKKEPVLLDKKEPVLLDKKEPV-------LLDKKAPVLLDKKEPVLLDKKEP  894 (1235)
Q Consensus       822 ~Vvl~~k~pvvl~~k~~vvl~~k~p~v~e~~~~vvl~~k~pvv~~~~~~V-------vl~~k~pvv~~~k~~Vvl~~~~p  894 (1235)
                      +++|..+.++-|.+.....  +..++.|.+|+--|+..-|.++.+.-|-|       ||..++++++.+.....=..| .
T Consensus       164 A~vI~~nqAL~LrA~~~F~--D~~G~~R~aGEEWLVt~~gaylP~v~Eevv~~V~a~VLse~eAL~LrA~~~F~D~~g-~  240 (850)
T PTZ00491        164 AVLIKPNQALKLRALETFT--DRDGVPRVAGEEWLVRTPGAYLPGVFEEVVGVVKGIVLSDKEALHLRALRTFTDVYG-G  240 (850)
T ss_pred             EEEecCCcEEEEEEeeeEE--CCCCCEeecCCEEEEeccccccCCCcceEEEEEEEEEecCCcEEEEEEeeeEEcCCC-C
Confidence            4444444444444443221  12344555565555555555554443332       233333333333333211122 3


Q ss_pred             eeecCCCceeeccC
Q psy14307        895 VLLDKKEPVLLDKK  908 (1235)
Q Consensus       895 ~m~d~~~~v~l~~k  908 (1235)
                      +-+.+|.--||+..
T Consensus       241 v~RkaGerWLVtg~  254 (850)
T PTZ00491        241 IARKAGEEWLVTHE  254 (850)
T ss_pred             EEeecCCeeEEeCC
Confidence            55555555555443

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	1235
2ahx_A	617	P180ERBB4, receptor tyrosine-protein kinase ERBB-4	1e-13
2ahx_A	617	P180ERBB4, receptor tyrosine-protein kinase ERBB-4	2e-11
2ahx_A	617	P180ERBB4, receptor tyrosine-protein kinase ERBB-4	5e-11
2ahx_A	617	P180ERBB4, receptor tyrosine-protein kinase ERBB-4	1e-10
2ahx_A	617	P180ERBB4, receptor tyrosine-protein kinase ERBB-4	1e-10
3ttq_A	1108	Dextransucrase; (beta/alpha)8 barrel, transferase;	1e-11
3ttq_A	1108	Dextransucrase; (beta/alpha)8 barrel, transferase;	1e-10
3ttq_A	1108	Dextransucrase; (beta/alpha)8 barrel, transferase;	2e-07
3ttq_A	1108	Dextransucrase; (beta/alpha)8 barrel, transferase;	3e-07
3ttq_A	1108	Dextransucrase; (beta/alpha)8 barrel, transferase;	9e-05
2qj6_A	332	Toxin A; clostridial repetitive oligo peptides; 2.	4e-11
2qj6_A	332	Toxin A; clostridial repetitive oligo peptides; 2.	4e-06
3gdb_A	937	Endo-D, putative uncharacterized protein SPR0440;	6e-11
3gdb_A	937	Endo-D, putative uncharacterized protein SPR0440;	2e-10
3gdb_A	937	Endo-D, putative uncharacterized protein SPR0440;	3e-10
3gdb_A	937	Endo-D, putative uncharacterized protein SPR0440;	4e-10
3gdb_A	937	Endo-D, putative uncharacterized protein SPR0440;	6e-10
3gdb_A	937	Endo-D, putative uncharacterized protein SPR0440;	7e-08
3gdb_A	937	Endo-D, putative uncharacterized protein SPR0440;	1e-07
3gdb_A	937	Endo-D, putative uncharacterized protein SPR0440;	1e-07
3gdb_A	937	Endo-D, putative uncharacterized protein SPR0440;	2e-07
3gdb_A	937	Endo-D, putative uncharacterized protein SPR0440;	2e-07
3gdb_A	937	Endo-D, putative uncharacterized protein SPR0440;	3e-07
3gdb_A	937	Endo-D, putative uncharacterized protein SPR0440;	3e-07
3gdb_A	937	Endo-D, putative uncharacterized protein SPR0440;	4e-07
3gdb_A	937	Endo-D, putative uncharacterized protein SPR0440;	6e-07
3gdb_A	937	Endo-D, putative uncharacterized protein SPR0440;	1e-06
3gdb_A	937	Endo-D, putative uncharacterized protein SPR0440;	2e-06
3gdb_A	937	Endo-D, putative uncharacterized protein SPR0440;	3e-06
3gdb_A	937	Endo-D, putative uncharacterized protein SPR0440;	4e-06
3gdb_A	937	Endo-D, putative uncharacterized protein SPR0440;	9e-06
2yhs_A	503	FTSY, cell division protein FTSY; cell cycle, prot	2e-10
2ww5_A	468	LYTC autolysin, 1,4-beta-N-acetylmuramidase; hydro	3e-10
2ww5_A	468	LYTC autolysin, 1,4-beta-N-acetylmuramidase; hydro	1e-07
2ww5_A	468	LYTC autolysin, 1,4-beta-N-acetylmuramidase; hydro	5e-04
3fip_A	493	Outer membrane usher protein PAPC; beta barrel, pr	5e-10
3fip_A	493	Outer membrane usher protein PAPC; beta barrel, pr	1e-09
2v05_A	311	Choline binding protein F; CBPF, lipid-binding-pro	9e-10
2v05_A	311	Choline binding protein F; CBPF, lipid-binding-pro	2e-07
2j8g_A	339	Lysozyme; antimicrobial, muein hydrolase, bacterio	3e-09
2j8g_A	339	Lysozyme; antimicrobial, muein hydrolase, bacterio	9e-07
2j8g_A	339	Lysozyme; antimicrobial, muein hydrolase, bacterio	1e-06
2hr7_A	486	Insulin receptor; hormone receptor, leucine rich r	1e-07
2hr7_A	486	Insulin receptor; hormone receptor, leucine rich r	6e-06
3aj6_A	286	Main hemagglutinin component; toxin, beta-trefoil;	2e-07
2bib_A	547	CBPE, teichoic acid phosphorylcholine esterase/ ch	8e-07
2bib_A	547	CBPE, teichoic acid phosphorylcholine esterase/ ch	4e-06
2qfc_A	293	PLCR protein; TPR, HTH, transcription regulation;	9e-07
2qfc_A	293	PLCR protein; TPR, HTH, transcription regulation;	1e-05
2qfc_A	293	PLCR protein; TPR, HTH, transcription regulation;	7e-05
2qfc_A	293	PLCR protein; TPR, HTH, transcription regulation;	2e-04
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	2e-06
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	3e-06
3q15_A	378	PSP28, response regulator aspartate phosphatase H;	2e-06
3q15_A	378	PSP28, response regulator aspartate phosphatase H;	8e-05
1ybi_A	288	HA33A, HA33/A, non-toxin haemagglutinin HA34; beta	4e-06
1ybi_A	288	HA33A, HA33/A, non-toxin haemagglutinin HA34; beta	2e-05
1m6b_A	621	C-ER, receptor protein-tyrosine kinase ERBB-3; cel	4e-06
1m6b_A	621	C-ER, receptor protein-tyrosine kinase ERBB-3; cel	7e-06
1m6b_A	621	C-ER, receptor protein-tyrosine kinase ERBB-3; cel	3e-05
1m6b_A	621	C-ER, receptor protein-tyrosine kinase ERBB-3; cel	2e-04
3ulq_A	383	Response regulator aspartate phosphatase F; tetrat	5e-06
3ulq_A	383	Response regulator aspartate phosphatase F; tetrat	2e-05
3ulq_A	383	Response regulator aspartate phosphatase F; tetrat	5e-04
3ulq_A	383	Response regulator aspartate phosphatase F; tetrat	7e-04
1igr_A	478	Insulin-like growth factor receptor 1; hormone rec	5e-06
1igr_A	478	Insulin-like growth factor receptor 1; hormone rec	1e-05
2wvr_C	546	DNA replication factor CDT1; DNA replication licen	7e-06
2wvr_C	546	DNA replication factor CDT1; DNA replication licen	1e-05
2wvr_C	546	DNA replication factor CDT1; DNA replication licen	2e-05
2wvr_C	546	DNA replication factor CDT1; DNA replication licen	8e-05
2wvr_C	546	DNA replication factor CDT1; DNA replication licen	2e-04
3rfz_B	843	Outer membrane usher protein, type 1 fimbrial SYN;	9e-06
3rfz_B	843	Outer membrane usher protein, type 1 fimbrial SYN;	3e-05
3v1v_A	433	2-MIB synthase, 2-methylisoborneol synthase; class	2e-05
3v1v_A	433	2-MIB synthase, 2-methylisoborneol synthase; class	4e-05
3v1v_A	433	2-MIB synthase, 2-methylisoborneol synthase; class	1e-04
3v1v_A	433	2-MIB synthase, 2-methylisoborneol synthase; class	2e-04
3v1v_A	433	2-MIB synthase, 2-methylisoborneol synthase; class	2e-04
2g7c_A	255	Toxin A; linear B trisaccharide, protein-carbohydr	2e-05
2g7c_A	255	Toxin A; linear B trisaccharide, protein-carbohydr	4e-05
2g7c_A	255	Toxin A; linear B trisaccharide, protein-carbohydr	4e-05
1deq_A	390	Fibrinogen (alpha chain); coiled-coil, blood clott	3e-05
3i2t_A	551	Epidermal growth factor receptor, isoform A; EGFR,	3e-05
3i2t_A	551	Epidermal growth factor receptor, isoform A; EGFR,	3e-04
1yy9_A	624	Epidermal growth factor receptor; cell surface rec	4e-05
1yy9_A	624	Epidermal growth factor receptor; cell surface rec	3e-04
1n8y_C	608	Protooncoprotein; tyrosin kinase receptor, cell su	7e-05
3klk_A	1039	Glucansucrase; native form, open conformation, mul	1e-04
1ki0_A	253	Angiostatin; kringle domains, hydrolase; HET: BCN;	1e-04
2grx_C	229	Protein TONB; beta barrel, outer membrane, heteroc	2e-04
2grx_C	229	Protein TONB; beta barrel, outer membrane, heteroc	3e-04
2grx_C	229	Protein TONB; beta barrel, outer membrane, heteroc	7e-04
2grx_C	229	Protein TONB; beta barrel, outer membrane, heteroc	9e-04

>2ahx_A P180ERBB4, receptor tyrosine-protein kinase ERBB-4; X-RAY crystallography, neuregulins, heparin-binding, cell CY signaling protein; HET: NAG NDG; 2.40A {Homo sapiens} PDB: 3u2p_A* Length = 617

 Score = 74.7 bits (182), Expect = 1e-13
 Identities = 22/244 (9%), Positives = 52/244 (21%), Gaps = 25/244 (10%)

Query: 992  QNYYFHQNQSQNYYYHQNLSQNYYYHQNLSLKYYCRRNLSQNYYCHQNQSPNNYYYHLNL 1051
                    +  N +        +   Q+           S           +     +  
Sbjct: 355  NAIEAIDPEKLNVFRTVREITGFLNIQSWPPNMTDFSVFSNLVTIGGRVLYSGLSLLILK 414

Query: 1052 SQNYYFHQNQSQNYYYHQNLSQNYYYHQNLSLKYYCRRNLSQNYYCHQNQSQNYYYHQNQ 1111
             Q     Q QS         + N Y   N +L YY   N +         +Q      N+
Sbjct: 415  QQGITSLQFQSLKEIS----AGNIYITDNSNLCYYHTINWTT---LFSTINQRIVIRDNR 467

Query: 1112 SQNYYYHQNQSQKYYYHQNLSQNYYYHQNLSQNYYCHQNQSQNYYYHQNQSQKYYYHQNL 1171
                      ++    +   S +  +     Q   C +                 + +  
Sbjct: 468  ----KAENCTAEGMVCNHLCSSDGCWGPGPDQCLSCRRFSRGRICIESCNLYDGEFREFE 523

Query: 1172 SQN--------CYYHQNRSQNYY---YHQNLSQNYYYHQNQSQK---NYYYHLNLSQNYY 1217
            + +        C   ++     +          +++       +   +     N     Y
Sbjct: 524  NDSICVECDPQCEKMEDGLLTCHGPGPDNCTKCSHFKDGPNCVEKCPDGLQGANSFIFKY 583

Query: 1218 YHQN 1221
               +
Sbjct: 584  ADPD 587

>2ahx_A P180ERBB4, receptor tyrosine-protein kinase ERBB-4; X-RAY crystallography, neuregulins, heparin-binding, cell CY signaling protein; HET: NAG NDG; 2.40A {Homo sapiens} PDB: 3u2p_A* Length = 617

 Score = 67.4 bits (163), Expect = 2e-11
 Identities = 23/263 (8%), Positives = 57/263 (21%), Gaps = 32/263 (12%)

Query: 992  QNYYFHQNQ-----SQNYYYHQNLSQNYYYHQNLSLKYYCRRNLSQNYYCHQNQSPNNYY 1046
             N+    +        +    +                 C    + +    Q    +N  
Sbjct: 271  HNFVVDSSSCVRACPSSKMEVEENGIKMCKPCTDICPKACDGIGTGSLMSAQTVDSSNID 330

Query: 1047 YHLN---LSQNYYFHQNQSQNYYYHQNLSQNYYYHQNLS--------LKYYCRRNLSQNY 1095
              +N   ++ N  F         Y+   + +                L          ++
Sbjct: 331  KFINCTKINGNLIFLVTGIHGDPYNAIEAIDPEKLNVFRTVREITGFLNIQSWPPNMTDF 390

Query: 1096 YCHQNQSQNYYYHQNQSQNYYYHQNQSQKY----YYHQNLSQNYYYHQNLSQNYYCHQN- 1150
                N             +    + Q           +  + N Y   N +  YY   N 
Sbjct: 391  SVFSNLVTIGGRVLYSGLSLLILKQQGITSLQFQSLKEISAGNIYITDNSNLCYYHTINW 450

Query: 1151 ------QSQNYYYHQNQSQKYYYHQNLSQNCYYHQNRSQNYYYHQNLSQNYYYHQNQSQK 1204
                   +Q      N+  +    + +  N     +        Q LS   +       +
Sbjct: 451  TTLFSTINQRIVIRDNRKAENCTAEGMVCNHLCSSDGCWGPGPDQCLSCRRFSRGRICIE 510

Query: 1205 NYYYHLNLSQNYYYHQNLSQNYY 1227
            +         +  + +  + +  
Sbjct: 511  SCNL-----YDGEFREFENDSIC 528

>2ahx_A P180ERBB4, receptor tyrosine-protein kinase ERBB-4; X-RAY crystallography, neuregulins, heparin-binding, cell CY signaling protein; HET: NAG NDG; 2.40A {Homo sapiens} PDB: 3u2p_A* Length = 617

 Score = 65.8 bits (159), Expect = 5e-11
 Identities = 19/220 (8%), Positives = 44/220 (20%), Gaps = 24/220 (10%)

Query: 983  YFGAVPEIGQNYYFHQNQSQNYYYHQNLSQNYYYHQNLSLKYYCRRNLSQNYYCHQNQSP 1042
               + P    ++    N             +    +   +     ++L +    +   + 
Sbjct: 379  NIQSWPPNMTDFSVFSNLVTIGGRVLYSGLSLLILKQQGITSLQFQSLKEISAGNIYITD 438

Query: 1043 NNYYYHLNLSQNYYFHQNQSQNYYYHQNLSQNYYYHQNLSLKYYCRRNLSQNYYCHQNQS 1102
            N+   + +           +Q      N        + +   + C  +        Q  S
Sbjct: 439  NSNLCYYHTINWTTLFSTINQRIVIRDNRKAENCTAEGMVCNHLCSSDGCWGPGPDQCLS 498

Query: 1103 QNYYYHQNQSQN--------YYYHQNQSQ--------------KYYYHQNLSQNYYYHQN 1140
               +                +   +N S                   H     N     +
Sbjct: 499  CRRFSRGRICIESCNLYDGEFREFENDSICVECDPQCEKMEDGLLTCHGPGPDNCTKCSH 558

Query: 1141 LSQNYYCHQNQSQNYYYHQNQSQKYYYHQNLSQNCYYHQN 1180
                  C +          +   KY         C  H N
Sbjct: 559  FKDGPNCVEKCPDGLQGANSFIFKYADPDRECHPC--HPN 596

>2ahx_A P180ERBB4, receptor tyrosine-protein kinase ERBB-4; X-RAY crystallography, neuregulins, heparin-binding, cell CY signaling protein; HET: NAG NDG; 2.40A {Homo sapiens} PDB: 3u2p_A* Length = 617

 Score = 65.1 bits (157), Expect = 1e-10
 Identities = 21/248 (8%), Positives = 48/248 (19%), Gaps = 26/248 (10%)

Query: 993  NYYFHQNQSQNYYYHQNLSQNYYYHQNLSLKYYCRRNLSQNYYCHQNQSPNNYYYHLNLS 1052
              +                Q + Y+      +    N +  Y                  
Sbjct: 226  MNFNDSGACV-----TQCPQTFVYNPT---TFQLEHNFNAKYTYGAFC-------VKKCP 270

Query: 1053 QNYYFHQNQ-----SQNYYYHQNLSQNYYYHQNLSLKYYCRRNLSQNYYCHQNQSQNYYY 1107
             N+    +        +    +                 C +            +Q    
Sbjct: 271  HNFVVDSSSCVRACPSSKMEVEENGIKMCKPCT----DICPKACDGIGTGSLMSAQTVDS 326

Query: 1108 HQNQSQNYYYHQNQSQKYYYHQNLSQNYYYHQNLSQNYYCHQNQSQNYYYHQNQSQKYYY 1167
                        N +  +         Y   + +           +      N       
Sbjct: 327  SNIDKFINCTKINGNLIFLVTGIHGDPYNAIEAIDPEKLNVFRTVREITGFLNIQSWPPN 386

Query: 1168 HQNLSQNCYYHQNRSQNYYYHQNLSQNYYYHQNQSQKNYYYHLNLSQNYYYHQNLSQNYY 1227
              + S   + +         +  LS      Q  +   +     +S    Y  + S   Y
Sbjct: 387  MTDFS--VFSNLVTIGGRVLYSGLSLLILKQQGITSLQFQSLKEISAGNIYITDNSNLCY 444

Query: 1228 YHQNSFTS 1235
            YH  ++T+
Sbjct: 445  YHTINWTT 452

>2ahx_A P180ERBB4, receptor tyrosine-protein kinase ERBB-4; X-RAY crystallography, neuregulins, heparin-binding, cell CY signaling protein; HET: NAG NDG; 2.40A {Homo sapiens} PDB: 3u2p_A* Length = 617

 Score = 64.7 bits (156), Expect = 1e-10
 Identities = 24/233 (10%), Positives = 55/233 (23%), Gaps = 18/233 (7%)

Query: 983  YFGAVPEIGQN---YYFHQNQ-SQNYYYHQNLSQNYYYHQNLSLKYYCRRNLSQNYYCHQ 1038
             F  V EI        +  N    + + +         +  LSL    ++ ++   +   
Sbjct: 367  VFRTVREITGFLNIQSWPPNMTDFSVFSNLVTIGGRVLYSGLSLLILKQQGITSLQFQSL 426

Query: 1039 NQSPNNYYYHLNLSQNYYFHQNQSQNYYYHQNLSQNYYYHQNLSLKYYCRRNLSQNYYCH 1098
             +      Y  + S   Y+H       +   N  Q      N   +      +  N+ C 
Sbjct: 427  KEISAGNIYITDNSNLCYYHTINWTTLFSTIN--QRIVIRDNRKAENCTAEGMVCNHLCS 484

Query: 1099 QNQSQNYYYHQNQSQNYYYHQNQSQKYYYHQNLSQNYYYHQNLSQNYYCHQNQSQNYYYH 1158
             +        Q  S   +       +          +   +N   +  C +   Q     
Sbjct: 485  SDGCWGPGPDQCLSCRRFSRGRICIESC--NLYDGEFREFEN---DSICVECDPQCEKME 539

Query: 1159 QNQSQKYYYHQNLSQNCYYHQNRSQ-------NYYYHQNLSQNYYYHQNQSQK 1204
                  +    +    C + ++                +    Y     +   
Sbjct: 540  DGLLTCHGPGPDNCTKCSHFKDGPNCVEKCPDGLQGANSFIFKYADPDRECHP 592

>3ttq_A Dextransucrase; (beta/alpha)8 barrel, transferase; HET: PG4; 1.90A {Leuconostoc mesenteroides} PDB: 3tto_A* Length = 1108

 Score = 68.6 bits (167), Expect = 1e-11
 Identities = 26/315 (8%), Positives = 71/315 (22%), Gaps = 77/315 (24%)

Query: 991  GQNYYFH----------QNQSQNYYYHQNLS-------------QNYYYHQNLSLKYYCR 1027
            G ++ +           Q+ +    Y    +             + YY+ ++        
Sbjct: 11   GNDWQYDTNGELAKGLRQDSNGKLRYFDLTTGIQAKGQFVTIGQETYYFSKDHGDAQLLP 70

Query: 1028 RNLSQNYYCHQN---QSPNNYYYHLNLS------------QNYYF------------HQN 1060
                 +Y        Q     + + + +               +F             + 
Sbjct: 71   MVTEGHYGTITLKQGQDTKTAWVYRDQNNTILKGLQNINGTLQFFDPYTGEQLKGGVAKY 130

Query: 1061 QSQNYYYHQN----------LSQNYYYHQNLSLKYYCRRNLSQNYYCHQNQSQNYYYHQ- 1109
              + +Y+               Q+ +Y        Y  +                Y+   
Sbjct: 131  DDKLFYFESGKGNLVSTVAGDYQDGHYISQDGQTRYADKQNQLVKGLVTVNGALQYFDNA 190

Query: 1110 ------NQSQN-----YYYHQNQSQKYYYHQNLSQNYYYHQNLSQNYYCHQNQSQNYYYH 1158
                  NQ        YY+    + +Y +   L  +       +  +    +   +    
Sbjct: 191  TGNQIKNQQVIVDGKTYYFDDKGNGEYLFTNTLDMSTNAFSTKNVAFNHDSSSFDHTVDG 250

Query: 1159 QNQSQKYYYHQNLSQNC--YYHQNRSQNYYYHQNLSQNYYYHQNQSQKNYYYHLNLSQNY 1216
               +  +Y  +++  N   +     S +      ++  +     Q     +   N     
Sbjct: 251  FLTADTWYRPKSILANGTTWRD---STDKDMRPLITVWWPNKNVQVNYLNFMKANGLLTT 307

Query: 1217 YYHQNLSQNYYYHQN 1231
                 L  + Y    
Sbjct: 308  AAQYTLHSDQYDLNQ 322

>3ttq_A Dextransucrase; (beta/alpha)8 barrel, transferase; HET: PG4; 1.90A {Leuconostoc mesenteroides} PDB: 3tto_A* Length = 1108

 Score = 65.1 bits (158), Expect = 1e-10
 Identities = 27/267 (10%), Positives = 67/267 (25%), Gaps = 42/267 (15%)

Query: 991  GQNYYFHQN---QSQNYYYHQNLSQNYYYHQNL-SLKYYCRRNLSQNYYCHQNQSPNNYY 1046
            G   +F      Q +      +  + +Y+     +L      +    +Y     S +   
Sbjct: 110  GTLQFFDPYTGEQLKGGVAKYD-DKLFYFESGKGNLVSTVAGDYQDGHY----ISQDGQT 164

Query: 1047 YHLNLS------------QNYYFHQN---QSQNYYYHQNLSQNYYYHQNLSLKYYCRRNL 1091
             + +                 YF      Q +N     +  + YY+    + +Y     L
Sbjct: 165  RYADKQNQLVKGLVTVNGALQYFDNATGNQIKNQQVIVD-GKTYYFDDKGNGEYLFTNTL 223

Query: 1092 SQNYYCHQNQSQNYYYHQNQSQNYYYHQNQSQKYYYHQNLSQN--YYYHQNLSQNYYCHQ 1149
              +      ++  + +  +   +       +  +Y  +++  N   +             
Sbjct: 224  DMSTNAFSTKNVAFNHDSSSFDHTVDGFLTADTWYRPKSILANGTTWRDSTDKDMRP--- 280

Query: 1150 NQSQNYYYHQNQSQKYYYHQNLSQNCYYHQNRSQNYYYHQNLSQNYYYHQNQSQKNYYY- 1208
                  ++     Q  Y +       +   N          L  + Y     +Q      
Sbjct: 281  --LITVWWPNKNVQVNYLN-------FMKANGLLTTAAQYTLHSDQYDLNQAAQDVQVAI 331

Query: 1209 --HLNLSQNYYYHQNLSQNYYYHQNSF 1233
               +       + Q L      +  SF
Sbjct: 332  ERRIASEHGTDWLQKLLFESQNNNPSF 358

>3ttq_A Dextransucrase; (beta/alpha)8 barrel, transferase; HET: PG4; 1.90A {Leuconostoc mesenteroides} PDB: 3tto_A* Length = 1108

 Score = 54.3 bits (130), Expect = 2e-07
 Identities = 26/246 (10%), Positives = 65/246 (26%), Gaps = 27/246 (10%)

Query: 991  GQNYYFHQN---QSQNYYYHQNLSQNYYYHQNLSLKYYCRRNLSQNYYCHQNQSPNNYYY 1047
            G   YF      Q +N     +  + YY+    + +Y     L  +       S  N  +
Sbjct: 182  GALQYFDNATGNQIKNQQVIVD-GKTYYFDDKGNGEYLFTNTLDMSTN---AFSTKNVAF 237

Query: 1048 HLNLSQNYYFHQ--NQSQNYYYHQNLSQN--YYYHQNLSLKYYCRRNLSQNYYCHQNQSQ 1103
            + + S   +       +  +Y  +++  N   +           R  ++  +     Q  
Sbjct: 238  NHDSSSFDHTVDGFLTADTWYRPKSILANGTTWRDST---DKDMRPLITVWWPNKNVQVN 294

Query: 1104 NYYYHQN---QSQNYYYHQNQSQKYYYHQNLSQNYYYHQNLSQN-------YYCHQNQSQ 1153
               + +     +    Y  +  Q               + ++             ++Q+ 
Sbjct: 295  YLNFMKANGLLTTAAQYTLHSDQYDLNQAAQDVQVAIERRIASEHGTDWLQKLLFESQNN 354

Query: 1154 NYYYHQNQSQKYYYHQNLSQNCYYHQNRSQNYYYHQNLSQNYYYHQNQSQKNYYYHLNLS 1213
            N  + + Q       +       + Q     Y    N       + +  Q    +   L+
Sbjct: 355  NPSFVKQQFIWNKDSEYHGGGDAWFQGGYLKYG---NNPLTPTTNSDYRQPGNAFDFLLA 411

Query: 1214 QNYYYH 1219
             +    
Sbjct: 412  NDVDNS 417

>3ttq_A Dextransucrase; (beta/alpha)8 barrel, transferase; HET: PG4; 1.90A {Leuconostoc mesenteroides} PDB: 3tto_A* Length = 1108

 Score = 54.3 bits (130), Expect = 3e-07
 Identities = 30/280 (10%), Positives = 71/280 (25%), Gaps = 50/280 (17%)

Query: 991  GQNYYFHQN----------QSQNYYYHQNLSQNYYYHQNLSLKYYCRRNLSQNYYCHQN- 1039
             + +YF               Q+ +Y     Q  Y  +   L            Y     
Sbjct: 132  DKLFYFESGKGNLVSTVAGDYQDGHYISQDGQTRYADKQNQLVKGLVTVNGALQYFDNAT 191

Query: 1040 --------QSPNNYYYHLNLSQNYYFHQNQSQNYYYHQNLSQNYYYHQNLSLKYYCRRN- 1090
                       +   Y+ +   N  +    + +   +   ++N  ++ + S  +    + 
Sbjct: 192  GNQIKNQQVIVDGKTYYFDDKGNGEYLFTNTLDMSTNAFSTKNVAFNHDSS-SFDHTVDG 250

Query: 1091 --LSQNYYCHQNQSQN--YYYHQNQSQ-----NYYYHQNQSQKYYYHQNLSQNYYYHQNL 1141
               +  +Y  ++   N   +              ++     Q  Y       N+     L
Sbjct: 251  FLTADTWYRPKSILANGTTWRDSTDKDMRPLITVWWPNKNVQVNYL------NFMKANGL 304

Query: 1142 SQNYYCHQNQSQNYYYHQNQSQKYYYHQN----------LSQNCYYHQNRSQNYYYHQNL 1191
                  +   S  Y  +Q         +           L +  +  QN + ++   Q +
Sbjct: 305  LTTAAQYTLHSDQYDLNQAAQDVQVAIERRIASEHGTDWLQKLLFESQNNNPSFVKQQFI 364

Query: 1192 ----SQNYYYHQNQSQKNYYYHLNLSQNYYYHQNLSQNYY 1227
                S+ +       Q  Y  + N       + +  Q   
Sbjct: 365  WNKDSEYHGGGDAWFQGGYLKYGNNPLTPTTNSDYRQPGN 404

>3ttq_A Dextransucrase; (beta/alpha)8 barrel, transferase; HET: PG4; 1.90A {Leuconostoc mesenteroides} PDB: 3tto_A* Length = 1108

 Score = 45.8 bits (108), Expect = 9e-05
 Identities = 18/172 (10%), Positives = 38/172 (22%), Gaps = 44/172 (25%)

Query: 1102 SQNYYYHQNQSQNYYYHQNQSQKYYYHQNLSQNYYYHQNLSQNYYCHQNQSQN-----YY 1156
            +Q  +Y      ++ Y  N        Q+ +    Y           + Q        YY
Sbjct: 1    AQAGHYITKNGNDWQYDTNGELAKGLRQDSNGKLRYF--DLTTGIQAKGQFVTIGQETYY 58

Query: 1157 YHQNQSQKYYYHQNLSQNCYYHQNRSQN------YYYH---------QNLSQNYYY---- 1197
            + ++             +      +          Y           QN++    +    
Sbjct: 59   FSKDHGDAQLLPMVTEGHYGTITLKQGQDTKTAWVYRDQNNTILKGLQNINGTLQFFDPY 118

Query: 1198 --------HQNQSQKNYYYHLN----------LSQNYYYHQNLSQNYYYHQN 1231
                          K +Y+               Q+ +Y     Q  Y  + 
Sbjct: 119  TGEQLKGGVAKYDDKLFYFESGKGNLVSTVAGDYQDGHYISQDGQTRYADKQ 170

>2qj6_A Toxin A; clostridial repetitive oligo peptides; 2.50A {Clostridium difficile} Length = 332

 Score = 64.9 bits (158), Expect = 4e-11
 Identities = 46/285 (16%), Positives = 89/285 (31%), Gaps = 52/285 (18%)

Query: 991  GQNYYFHQN--QSQNYYYHQNLSQNYYYHQNLSLKYYCRRNLSQNYYCHQNQSPNNYYYH 1048
            G+++YF+ +       +   N     Y+    +             Y ++  + N   Y+
Sbjct: 22   GKHFYFNTDGIMQIGVFKGPN--GFEYFAPANTDANN--IEGQAILYQNKFLTLNGKKYY 77

Query: 1049 LNLS------------QNYYFHQNQSQNYYYHQNLSQN-YYYHQNLSLKYYCRRNLS-QN 1094
                            + YYF+ N +      Q ++   YY++ N S+       +S ++
Sbjct: 78   FGSDSKAVTGLRTIDGKKYYFNTNTAVAVTGWQTINGKKYYFNTNTSIASTGYTIISGKH 137

Query: 1095 YYCHQN----------QSQNYYYHQNQSQNYYYHQNQSQKYYYHQNLSQNYYYHQNLSQN 1144
            +Y + +               Y+    +          +       L  N YY  N S+ 
Sbjct: 138  FYFNTDGIMQIGVFKGPDGFEYFAPANTDANNIEGQAIRYQNRFLYLHDNIYYFGNNSKA 197

Query: 1145 YY-CHQNQSQNYYYHQNQSQ----------KYYYHQN-LSQNCYYHQNRSQNYYYHQNLS 1192
                       YY+  N +           K +Y +N L Q   +  +    Y+   N  
Sbjct: 198  ATGWVTIDGNRYYFEPNTAMGANGYKTIDNKNFYFRNGLPQIGVFKGSNGFEYFAPANTD 257

Query: 1193 QNYYYHQNQSQKNYYYHLNLSQNYYYH---------QNLSQNYYY 1228
             N    Q    +N + HL   + YY+          Q ++   YY
Sbjct: 258  ANNIEGQAIRYQNRFLHLL-GKIYYFGNNSKAVTGWQTINGKVYY 301

>2qj6_A Toxin A; clostridial repetitive oligo peptides; 2.50A {Clostridium difficile} Length = 332

 Score = 49.5 bits (118), Expect = 4e-06
 Identities = 25/204 (12%), Positives = 67/204 (32%), Gaps = 26/204 (12%)

Query: 1043 NNYYYHLNLSQNYYFHQNQSQNYYYHQN--LSQNYYYHQNLSLKYYCRRNLSQNYYCHQN 1100
            +++++H +   +  +     +++Y++ +  +    +   N    +         Y+   N
Sbjct: 3    SSHHHHHHHHASTGYTSINGKHFYFNTDGIMQIGVFKGPN---GFE--------YFAPAN 51

Query: 1101 QSQNYYYHQNQSQNYYYHQNQSQKYYYHQNLSQNYYYHQNLSQNYYCHQNQSQNYY-YHQ 1159
               N    Q       +     +KYY+  +            + YY + N +     +  
Sbjct: 52   TDANNIEGQAILYQNKFLTLNGKKYYFGSDSKAVTGLRTIDGKKYYFNTNTAVAVTGWQT 111

Query: 1160 NQSQKYYYHQN--LSQNCYYHQNRSQNYYYHQN---------LSQNYYYHQNQSQKNYYY 1208
               +KYY++ N  ++   Y   +  +++Y++ +             + Y    +      
Sbjct: 112  INGKKYYFNTNTSIASTGYTIIS-GKHFYFNTDGIMQIGVFKGPDGFEYFAPANTDANNI 170

Query: 1209 HLNLSQNYYYHQNLSQNYYYHQNS 1232
                 +       L  N YY  N+
Sbjct: 171  EGQAIRYQNRFLYLHDNIYYFGNN 194

>3gdb_A Endo-D, putative uncharacterized protein SPR0440; alpha-beta-barrels, cell WALL, peptidoglycan-anchor, secreted, hydrolase; HET: PGE; 1.87A {Streptococcus pneumoniae} PDB: 2xqx_A Length = 937

 Score = 66.1 bits (160), Expect = 6e-11
 Identities = 29/198 (14%), Positives = 49/198 (24%), Gaps = 6/198 (3%)

Query: 303 EVPETTKPQLPEVPEPTKSQLPEVPEPTKPQLPEVLEPTTLQLPEDPEPTKPQLPEDPEP 362
           +  ET  P+         S   E       +  E       +L +            P  
Sbjct: 20  QGEETAVPENSGANTELVSGESEHSTNEADKQNEGEHARENKLEKAEGVATASETASPAS 79

Query: 363 TKPQLPEVPEPTKPQLPEVLEPTKLQLPEDPEPTKPQLPEDPETTKPQLPEVPEPTKLQL 422
            +    E  E      PE  E     + E P        +     KP+     + +K   
Sbjct: 80  NEAATTETAEAASAAKPE--EKASEVVAETPSAEAKPKSDKETEAKPEATNQGDESKPAA 137

Query: 423 PEVPEPTKPELPEVPELTKTQLPEVPEPTKPQILDKKEPVLLDKKEPVLLDKKEPVLPPK 482
                  + +        KT  P+  +    + L K EP             +  V+   
Sbjct: 138 EANKTEKEVQPDVPKNTEKTLKPKEIKFNSWEELLKWEP----GAREDDAINRGSVVLAS 193

Query: 483 PEPEILLPPKPEPELLLP 500
                L+  K   E  + 
Sbjct: 194 RRTGHLVNEKASKEAKVQ 211

>3gdb_A Endo-D, putative uncharacterized protein SPR0440; alpha-beta-barrels, cell WALL, peptidoglycan-anchor, secreted, hydrolase; HET: PGE; 1.87A {Streptococcus pneumoniae} PDB: 2xqx_A Length = 937

 Score = 64.2 bits (155), Expect = 2e-10
 Identities = 30/203 (14%), Positives = 52/203 (25%), Gaps = 1/203 (0%)

Query: 272 NLSDLNEDLKKPGEPEVQTPIVPEPTKQELPEVPETTKPQLPEVPEPTKSQLPE-VPEPT 330
            L +L    ++   PE         + +      E  K    E     K +  E V   +
Sbjct: 13  QLENLYFQGEETAVPENSGANTELVSGESEHSTNEADKQNEGEHARENKLEKAEGVATAS 72

Query: 331 KPQLPEVLEPTTLQLPEDPEPTKPQLPEDPEPTKPQLPEVPEPTKPQLPEVLEPTKLQLP 390
           +   P   E  T +  E     KP+        +    E    +  +     E T     
Sbjct: 73  ETASPASNEAATTETAEAASAAKPEEKASEVVAETPSAEAKPKSDKETEAKPEATNQGDE 132

Query: 391 EDPEPTKPQLPEDPETTKPQLPEVPEPTKLQLPEVPEPTKPELPEVPELTKTQLPEVPEP 450
             P     +  ++ +   P+  E     K       E      P   E        V   
Sbjct: 133 SKPAAEANKTEKEVQPDVPKNTEKTLKPKEIKFNSWEELLKWEPGAREDDAINRGSVVLA 192

Query: 451 TKPQILDKKEPVLLDKKEPVLLD 473
           ++       E    + K   L +
Sbjct: 193 SRRTGHLVNEKASKEAKVQALSN 215

>3gdb_A Endo-D, putative uncharacterized protein SPR0440; alpha-beta-barrels, cell WALL, peptidoglycan-anchor, secreted, hydrolase; HET: PGE; 1.87A {Streptococcus pneumoniae} PDB: 2xqx_A Length = 937

 Score = 63.8 bits (154), Expect = 3e-10
 Identities = 22/194 (11%), Positives = 49/194 (25%), Gaps = 2/194 (1%)

Query: 317 EPTKSQLPEVPEPTKPQLPEVLEPTTLQLPEDPEPTKPQLPEDPEPTKPQLPEVPEPTKP 376
           +  ++ +PE        +    E +T +  +  E    +     E  +       E   P
Sbjct: 20  QGEETAVPENSGANTELVSGESEHSTNEADKQNEGEHAR-ENKLEKAEGV-ATASETASP 77

Query: 377 QLPEVLEPTKLQLPEDPEPTKPQLPEDPETTKPQLPEVPEPTKLQLPEVPEPTKPELPEV 436
              E       +     +P +       ET   +     +      PE         P  
Sbjct: 78  ASNEAATTETAEAASAAKPEEKASEVVAETPSAEAKPKSDKETEAKPEATNQGDESKPAA 137

Query: 437 PELTKTQLPEVPEPTKPQILDKKEPVLLDKKEPVLLDKKEPVLPPKPEPEILLPPKPEPE 496
                 +  +   P   +   K + +  +  E +L  +             ++       
Sbjct: 138 EANKTEKEVQPDVPKNTEKTLKPKEIKFNSWEELLKWEPGAREDDAINRGSVVLASRRTG 197

Query: 497 LLLPPKPEPELLLP 510
            L+  K   E  + 
Sbjct: 198 HLVNEKASKEAKVQ 211

>3gdb_A Endo-D, putative uncharacterized protein SPR0440; alpha-beta-barrels, cell WALL, peptidoglycan-anchor, secreted, hydrolase; HET: PGE; 1.87A {Streptococcus pneumoniae} PDB: 2xqx_A Length = 937

 Score = 63.4 bits (153), Expect = 4e-10
 Identities = 24/197 (12%), Positives = 51/197 (25%), Gaps = 5/197 (2%)

Query: 336 EVLEPTTLQLPEDPEPTKPQLPEDPEPTKPQLPEVPEPTKPQLPEVLEPTKLQLPEDPEP 395
              +     +PE+       +  + E +  +  +  E    +  ++ +     +    E 
Sbjct: 17  LYFQGEETAVPENSGANTELVSGESEHSTNEADKQNEGEHARENKLEKAE--GVATASET 74

Query: 396 TKPQLPEDPETTKPQLPEVPEPTKLQLPEVPEPTKPELPEVPELTKTQLPEV---PEPTK 452
             P   E   T   +     +P +     V E    E     +      PE     + +K
Sbjct: 75  ASPASNEAATTETAEAASAAKPEEKASEVVAETPSAEAKPKSDKETEAKPEATNQGDESK 134

Query: 453 PQILDKKEPVLLDKKEPVLLDKKEPVLPPKPEPEILLPPKPEPELLLPPKPEPELLLPPK 512
           P     K    +    P   +K       K      L                 ++L  +
Sbjct: 135 PAAEANKTEKEVQPDVPKNTEKTLKPKEIKFNSWEELLKWEPGAREDDAINRGSVVLASR 194

Query: 513 LEPKLLLPPKSEPELLL 529
               L+    S+   + 
Sbjct: 195 RTGHLVNEKASKEAKVQ 211

>3gdb_A Endo-D, putative uncharacterized protein SPR0440; alpha-beta-barrels, cell WALL, peptidoglycan-anchor, secreted, hydrolase; HET: PGE; 1.87A {Streptococcus pneumoniae} PDB: 2xqx_A Length = 937

 Score = 63.1 bits (152), Expect = 6e-10
 Identities = 25/197 (12%), Positives = 46/197 (23%), Gaps = 2/197 (1%)

Query: 325 EVPEPTKPQLPEVLEPTTLQLPEDPEPTKPQLPEDPEPTKPQLPEVPEPTKPQLPEVLEP 384
           +  E   P+             E       +  E     + +L +               
Sbjct: 20  QGEETAVPENSGANTELVSGESEHSTNEADKQNEGEHARENKLEKAEGVATASETASPAS 79

Query: 385 TKLQLPEDPEPTKPQLPEDPETTKPQLPEVPEPTKLQLPEVPEPTKPELPEVPELTKTQL 444
            +    E  E      PE  E     + E P        +     KPE     + +K   
Sbjct: 80  NEAATTETAEAASAAKPE--EKASEVVAETPSAEAKPKSDKETEAKPEATNQGDESKPAA 137

Query: 445 PEVPEPTKPQILDKKEPVLLDKKEPVLLDKKEPVLPPKPEPEILLPPKPEPELLLPPKPE 504
                  + Q    K      K + +  +  E +L  +P             +L   +  
Sbjct: 138 EANKTEKEVQPDVPKNTEKTLKPKEIKFNSWEELLKWEPGAREDDAINRGSVVLASRRTG 197

Query: 505 PELLLPPKLEPKLLLPP 521
             +      E K+    
Sbjct: 198 HLVNEKASKEAKVQALS 214

>3gdb_A Endo-D, putative uncharacterized protein SPR0440; alpha-beta-barrels, cell WALL, peptidoglycan-anchor, secreted, hydrolase; HET: PGE; 1.87A {Streptococcus pneumoniae} PDB: 2xqx_A Length = 937

 Score = 56.1 bits (134), Expect = 7e-08
 Identities = 19/179 (10%), Positives = 35/179 (19%), Gaps = 6/179 (3%)

Query: 540 PPKPKPELLLPPKPEPEKLLLPPKPKPKLLLPPKPESELLLPPKPEPELIIPPKPEPEIL 599
              P+           E                + E E     K E    +    E    
Sbjct: 24  TAVPENSGANTELVSGES---EHSTNEA---DKQNEGEHARENKLEKAEGVATASETASP 77

Query: 600 IPPKPEPELLLPPKPEPEILLPPKPEPELLLPPKPEPEILLPPKPEPELLLPPKPESELL 659
              +             +               + +P+     + +PE            
Sbjct: 78  ASNEAATTETAEAASAAKPEEKASEVVAETPSAEAKPKSDKETEAKPEATNQGDESKPAA 137

Query: 660 LPLKPEPEILLPPKPEPELLLPPKPEPELLLPPKPETITTTKTLLLDKKEPVLLDKKEP 718
              K E E+        E  L PK           +     +      +  V+L  +  
Sbjct: 138 EANKTEKEVQPDVPKNTEKTLKPKEIKFNSWEELLKWEPGAREDDAINRGSVVLASRRT 196

>3gdb_A Endo-D, putative uncharacterized protein SPR0440; alpha-beta-barrels, cell WALL, peptidoglycan-anchor, secreted, hydrolase; HET: PGE; 1.87A {Streptococcus pneumoniae} PDB: 2xqx_A Length = 937

 Score = 55.4 bits (132), Expect = 1e-07
 Identities = 22/196 (11%), Positives = 44/196 (22%)

Query: 391 EDPEPTKPQLPEDPETTKPQLPEVPEPTKLQLPEVPEPTKPELPEVPELTKTQLPEVPEP 450
           +  E   P+             E       +  E     + +L +   +        P  
Sbjct: 20  QGEETAVPENSGANTELVSGESEHSTNEADKQNEGEHARENKLEKAEGVATASETASPAS 79

Query: 451 TKPQILDKKEPVLLDKKEPVLLDKKEPVLPPKPEPEILLPPKPEPELLLPPKPEPELLLP 510
            +    +  E     K E    +        + +P+     + +PE              
Sbjct: 80  NEAATTETAEAASAAKPEEKASEVVAETPSAEAKPKSDKETEAKPEATNQGDESKPAAEA 139

Query: 511 PKLEPKLLLPPKSEPELLLPPKPEPELLLPPKPKPELLLPPKPEPEKLLLPPKPKPKLLL 570
            K E ++        E  L PK           K E          +  +    +    L
Sbjct: 140 NKTEKEVQPDVPKNTEKTLKPKEIKFNSWEELLKWEPGAREDDAINRGSVVLASRRTGHL 199

Query: 571 PPKPESELLLPPKPEP 586
             +  S+         
Sbjct: 200 VNEKASKEAKVQALSN 215

>3gdb_A Endo-D, putative uncharacterized protein SPR0440; alpha-beta-barrels, cell WALL, peptidoglycan-anchor, secreted, hydrolase; HET: PGE; 1.87A {Streptococcus pneumoniae} PDB: 2xqx_A Length = 937

 Score = 55.0 bits (131), Expect = 1e-07
 Identities = 26/219 (11%), Positives = 47/219 (21%), Gaps = 9/219 (4%)

Query: 344 QLPEDPEPTKPQLPEDPEPTKPQLPEVPEPTKPQLPEVLEPTKLQLPEDPEPTKPQLPED 403
                       L    E T    PE        +    E +     E  +  + +   +
Sbjct: 5   HHHHGHHHQLENLYFQGEETAV--PENSGANTELVSGESEHST---NEADKQNEGEHARE 59

Query: 404 PETTKPQLPEVPEPTKLQLPEVPEPTKPELPEVPELTKTQLPEVPEPTKPQILDKKEPVL 463
            +  K     V   ++   P   E    E  E     K    E       +    +    
Sbjct: 60  NKLEKA--EGVATASETASPASNEAATTETAEAASAAKP--EEKASEVVAETPSAEAKPK 115

Query: 464 LDKKEPVLLDKKEPVLPPKPEPEILLPPKPEPELLLPPKPEPELLLPPKLEPKLLLPPKS 523
            DK+     +        KP  E     K     +     +       K      L    
Sbjct: 116 SDKETEAKPEATNQGDESKPAAEANKTEKEVQPDVPKNTEKTLKPKEIKFNSWEELLKWE 175

Query: 524 EPELLLPPKPEPELLLPPKPKPELLLPPKPEPEKLLLPP 562
                        ++L  +    L+     +  K+    
Sbjct: 176 PGAREDDAINRGSVVLASRRTGHLVNEKASKEAKVQALS 214

>3gdb_A Endo-D, putative uncharacterized protein SPR0440; alpha-beta-barrels, cell WALL, peptidoglycan-anchor, secreted, hydrolase; HET: PGE; 1.87A {Streptococcus pneumoniae} PDB: 2xqx_A Length = 937

 Score = 54.6 bits (130), Expect = 2e-07
 Identities = 28/217 (12%), Positives = 41/217 (18%), Gaps = 26/217 (11%)

Query: 490 PPKPEPELLLPPKPEPELLLPPKLEPKLLLPPKSEPELLLPPKPEPELLLPPKPKPELLL 549
              PE           E                S  E     + E E     K +     
Sbjct: 24  TAVPENSGANTELVSGE-------------SEHSTNE--ADKQNEGEHARENKLEKA--- 65

Query: 550 PPKPEPEKLLLPPKPKPKLLLPPKPESELLLPPKPEPELIIPPKPEPEILIPPKPEPELL 609
                  +   P   +       +  S      K    +   P  E +    PK + E  
Sbjct: 66  EGVATASETASPASNEAATTETAEAASAAKPEEKASEVVAETPSAEAK----PKSDKE-- 119

Query: 610 LPPKPEPEILLPPKPEPELLLPPKPEPEILLPPKPEPELLLPPKPESELLLPLKPEPEIL 669
              + +PE               K E E+        E  L PK           + E  
Sbjct: 120 --TEAKPEATNQGDESKPAAEANKTEKEVQPDVPKNTEKTLKPKEIKFNSWEELLKWEPG 177

Query: 670 LPPKPEPELLLPPKPEPELLLPPKPETITTTKTLLLD 706
                                    +     K   L 
Sbjct: 178 AREDDAINRGSVVLASRRTGHLVNEKASKEAKVQALS 214

>3gdb_A Endo-D, putative uncharacterized protein SPR0440; alpha-beta-barrels, cell WALL, peptidoglycan-anchor, secreted, hydrolase; HET: PGE; 1.87A {Streptococcus pneumoniae} PDB: 2xqx_A Length = 937

 Score = 54.2 bits (129), Expect = 2e-07
 Identities = 29/219 (13%), Positives = 55/219 (25%), Gaps = 18/219 (8%)

Query: 383 EPTKLQLPEDPEPTKPQLPEDPETTKPQLPEVPEPTKLQLPEVPEPTKPELPEVPELTKT 442
                 L    E T    PE+       +    E +  +  +  E       ++ +    
Sbjct: 11  HHQLENLYFQGEETAV--PENSGANTELVSGESEHSTNEADKQNEGEHARENKLEK--AE 66

Query: 443 QLPEVPEPTKPQILDKKEPVLLDKKEPVLLDKKEPVLPPKPEPEILLPPKPEPELLLPPK 502
            +    E   P              E    +  E     KPE +        P     PK
Sbjct: 67  GVATASETASPA-----------SNEAATTETAEAASAAKPEEKASEVVAETPSAEAKPK 115

Query: 503 PEPELLLPPKLEPKLLLPPKSEPELLLPPKPEPELLLPPKPKPELLLPPKPEPEKLLLPP 562
            + E    P+   +     +S+P        +      PK   + L P + +        
Sbjct: 116 SDKETEAKPEATNQ---GDESKPAAEANKTEKEVQPDVPKNTEKTLKPKEIKFNSWEELL 172

Query: 563 KPKPKLLLPPKPESELLLPPKPEPELIIPPKPEPEILIP 601
           K +P            ++        ++  K   E  + 
Sbjct: 173 KWEPGAREDDAINRGSVVLASRRTGHLVNEKASKEAKVQ 211

>3gdb_A Endo-D, putative uncharacterized protein SPR0440; alpha-beta-barrels, cell WALL, peptidoglycan-anchor, secreted, hydrolase; HET: PGE; 1.87A {Streptococcus pneumoniae} PDB: 2xqx_A Length = 937

 Score = 54.2 bits (129), Expect = 3e-07
 Identities = 31/211 (14%), Positives = 52/211 (24%), Gaps = 11/211 (5%)

Query: 380 EVLEPTKLQLPEDPEPTKPQLPEDPETTKPQLPEVPEPTKLQLPEVPEPTKPELPEVPEL 439
             LE    Q  E   P       + E    +          Q  E     + +L +   +
Sbjct: 12  HQLENLYFQGEETAVPENS--GANTELVSGESEHSTNEADKQ-NEGEHARENKLEKAEGV 68

Query: 440 TKTQLPEVPEPTKPQILDKKEPVLLDKKEPVLLDKKEPVLPPKPEPEILLPPKPEPELLL 499
                   P   +    +  E     K E     K   V+   P  E     KP+ +   
Sbjct: 69  ATASETASPASNEAATTETAEAASAAKPEE----KASEVVAETPSAE----AKPKSDKET 120

Query: 500 PPKPEPELLLPPKLEPKLLLPPKSEPELLLPPKPEPELLLPPKPKPELLLPPKPEPEKLL 559
             KPE                 + E +  +P   E  L              K EP    
Sbjct: 121 EAKPEATNQGDESKPAAEANKTEKEVQPDVPKNTEKTLKPKEIKFNSWEELLKWEPGARE 180

Query: 560 LPPKPKPKLLLPPKPESELLLPPKPEPELII 590
                +  ++L  +    L+     +   + 
Sbjct: 181 DDAINRGSVVLASRRTGHLVNEKASKEAKVQ 211

>3gdb_A Endo-D, putative uncharacterized protein SPR0440; alpha-beta-barrels, cell WALL, peptidoglycan-anchor, secreted, hydrolase; HET: PGE; 1.87A {Streptococcus pneumoniae} PDB: 2xqx_A Length = 937

 Score = 53.8 bits (128), Expect = 3e-07
 Identities = 18/178 (10%), Positives = 37/178 (20%), Gaps = 5/178 (2%)

Query: 581 PPKPEPELIIPPKPEPEILIPPKPEPELLLPPKPEPEILLPPKPEPELLLPPKPEPEILL 640
              PE           E         E     + E E     K E    +    E     
Sbjct: 24  TAVPENSGANTELVSGE---SEHSTNEA--DKQNEGEHARENKLEKAEGVATASETASPA 78

Query: 641 PPKPEPELLLPPKPESELLLPLKPEPEILLPPKPEPELLLPPKPEPELLLPPKPETITTT 700
             +            ++               + +P+     + +PE             
Sbjct: 79  SNEAATTETAEAASAAKPEEKASEVVAETPSAEAKPKSDKETEAKPEATNQGDESKPAAE 138

Query: 701 KTLLLDKKEPVLLDKKEPVLLDKKEPVLLDKKEPVLLDKKEPVLLDEKEPVLLDKKEP 758
                 + +P +    E  L  K+      ++               +  V+L  +  
Sbjct: 139 ANKTEKEVQPDVPKNTEKTLKPKEIKFNSWEELLKWEPGAREDDAINRGSVVLASRRT 196

>3gdb_A Endo-D, putative uncharacterized protein SPR0440; alpha-beta-barrels, cell WALL, peptidoglycan-anchor, secreted, hydrolase; HET: PGE; 1.87A {Streptococcus pneumoniae} PDB: 2xqx_A Length = 937

 Score = 53.8 bits (128), Expect = 4e-07
 Identities = 28/209 (13%), Positives = 50/209 (23%), Gaps = 11/209 (5%)

Query: 465 DKKEPVLLDKKEPVLP--PKPEPEILLPPKPEPELLLPPKPEPELLLPPKLEPKLLLPPK 522
            + E +    +E  +P       E++             + E E     KLE        
Sbjct: 12  HQLENLYFQGEETAVPENSGANTELVSGESEHSTNEADKQNEGEHARENKLEKA---EGV 68

Query: 523 SEPELLLPPKPEPELLLPPKPKPELLLPPKPEPEKLLLPPKPKPKLLLPPKPESELLLPP 582
           +       P                  P +   E +   P  +       KP+S+     
Sbjct: 69  ATASETASPASNEAATTETAEAASAAKPEEKASEVVAETPSAE------AKPKSDKETEA 122

Query: 583 KPEPELIIPPKPEPEILIPPKPEPELLLPPKPEPEILLPPKPEPELLLPPKPEPEILLPP 642
           KPE                 + E +  +P   E  +              K EP      
Sbjct: 123 KPEATNQGDESKPAAEANKTEKEVQPDVPKNTEKTLKPKEIKFNSWEELLKWEPGAREDD 182

Query: 643 KPEPELLLPPKPESELLLPLKPEPEILLP 671
                 ++     +  L+  K   E  + 
Sbjct: 183 AINRGSVVLASRRTGHLVNEKASKEAKVQ 211

>3gdb_A Endo-D, putative uncharacterized protein SPR0440; alpha-beta-barrels, cell WALL, peptidoglycan-anchor, secreted, hydrolase; HET: PGE; 1.87A {Streptococcus pneumoniae} PDB: 2xqx_A Length = 937

 Score = 53.0 bits (126), Expect = 6e-07
 Identities = 17/188 (9%), Positives = 39/188 (20%), Gaps = 5/188 (2%)

Query: 571 PPKPESELLLPPKPEPELIIPPKPEPEILIPPKPEPELLLPPKPEPEILLPPKPEPELLL 630
              PE+          E         E     + E E     K E    +    E     
Sbjct: 24  TAVPENSGANTELVSGE---SEHSTNEA--DKQNEGEHARENKLEKAEGVATASETASPA 78

Query: 631 PPKPEPEILLPPKPEPELLLPPKPESELLLPLKPEPEILLPPKPEPELLLPPKPEPELLL 690
             +             +               + +P+     + +PE             
Sbjct: 79  SNEAATTETAEAASAAKPEEKASEVVAETPSAEAKPKSDKETEAKPEATNQGDESKPAAE 138

Query: 691 PPKPETITTTKTLLLDKKEPVLLDKKEPVLLDKKEPVLLDKKEPVLLDKKEPVLLDEKEP 750
             K E           +K     + K     +  +     +++  +      +       
Sbjct: 139 ANKTEKEVQPDVPKNTEKTLKPKEIKFNSWEELLKWEPGAREDDAINRGSVVLASRRTGH 198

Query: 751 VLLDKKEP 758
           ++ +K   
Sbjct: 199 LVNEKASK 206

>3gdb_A Endo-D, putative uncharacterized protein SPR0440; alpha-beta-barrels, cell WALL, peptidoglycan-anchor, secreted, hydrolase; HET: PGE; 1.87A {Streptococcus pneumoniae} PDB: 2xqx_A Length = 937

 Score = 51.9 bits (123), Expect = 1e-06
 Identities = 28/214 (13%), Positives = 47/214 (21%), Gaps = 8/214 (3%)

Query: 399 QLPEDPETTKPQLPEVPEPTKLQLPEVPEPTKPELPEVPELTKTQLPEVPEPTKPQILDK 458
                       L    E T +  PE        +    E +  +  +  E    +  +K
Sbjct: 5   HHHHGHHHQLENLYFQGEETAV--PENSGANTELVSGESEHSTNEADKQNEGEHAR-ENK 61

Query: 459 KEPVLLDKKEPVLLDKKEPVLPPKPEPEILLPPKPEPELLLPPKPEPELLLPPKLEPKLL 518
            E                         E     KPE +        P      + +PK  
Sbjct: 62  LEKAEGVATASETASPASNEAATTETAEAASAAKPEEKASEVVAETPS----AEAKPKSD 117

Query: 519 LPPKSEPELLLPPKPEPELLLPPKPKPELLLPPKPEPEKLLLPPKPKPKLLLPPKPESEL 578
              +++PE               K + E+        EK L P + K             
Sbjct: 118 KETEAKPEATNQGDESKPAAEANKTEKEVQPDVPKNTEKTLKPKEIKFNSWEELLKWEPG 177

Query: 579 LLPPKPEPELIIPPKP-EPEILIPPKPEPELLLP 611
                      +         L+  K   E  + 
Sbjct: 178 AREDDAINRGSVVLASRRTGHLVNEKASKEAKVQ 211

>3gdb_A Endo-D, putative uncharacterized protein SPR0440; alpha-beta-barrels, cell WALL, peptidoglycan-anchor, secreted, hydrolase; HET: PGE; 1.87A {Streptococcus pneumoniae} PDB: 2xqx_A Length = 937

 Score = 51.1 bits (121), Expect = 2e-06
 Identities = 20/206 (9%), Positives = 41/206 (19%), Gaps = 13/206 (6%)

Query: 441 KTQLPEVPEPTKPQILDKKEPVLLDKKEPVLLDKKEPVLPPKPEPEILLPPKPEPELLLP 500
           +T +PE        +  + E                     + E E     K E    + 
Sbjct: 23  ETAVPENSGANTELVSGESEH-------------STNEADKQNEGEHARENKLEKAEGVA 69

Query: 501 PKPEPELLLPPKLEPKLLLPPKSEPELLLPPKPEPELLLPPKPKPELLLPPKPEPEKLLL 560
              E       +          S  +               + KP+     + +PE    
Sbjct: 70  TASETASPASNEAATTETAEAASAAKPEEKASEVVAETPSAEAKPKSDKETEAKPEATNQ 129

Query: 561 PPKPKPKLLLPPKPESELLLPPKPEPELIIPPKPEPEILIPPKPEPELLLPPKPEPEILL 620
             + KP        +      PK   + + P + +                        +
Sbjct: 130 GDESKPAAEANKTEKEVQPDVPKNTEKTLKPKEIKFNSWEELLKWEPGAREDDAINRGSV 189

Query: 621 PPKPEPELLLPPKPEPEILLPPKPEP 646
                    L  +   +         
Sbjct: 190 VLASRRTGHLVNEKASKEAKVQALSN 215

>3gdb_A Endo-D, putative uncharacterized protein SPR0440; alpha-beta-barrels, cell WALL, peptidoglycan-anchor, secreted, hydrolase; HET: PGE; 1.87A {Streptococcus pneumoniae} PDB: 2xqx_A Length = 937

 Score = 50.7 bits (120), Expect = 3e-06
 Identities = 22/212 (10%), Positives = 39/212 (18%), Gaps = 22/212 (10%)

Query: 480 PPKPEPEILLPPKPEPELLLPPKPEPELLLPPKLEPKLLLPPKSEPELLLPPKPEPELLL 539
                PE                                   ++E E     K E    +
Sbjct: 22  EETAVPENSGANTELVSGESEHSTNEA-------------DKQNEGEHARENKLEKAEGV 68

Query: 540 PPKPKPELLLPPKPEPEKLLLPPKPKPKLLLPPKPESELLLPPKPEPELIIPPKPEPEIL 599
               +      P           +         K    +   P  E +      P+ +  
Sbjct: 69  ATASETA---SPASNEAATTETAEAASAAKPEEKASEVVAETPSAEAK------PKSDKE 119

Query: 600 IPPKPEPELLLPPKPEPEILLPPKPEPELLLPPKPEPEILLPPKPEPELLLPPKPESELL 659
              KPE                 + E +  +P   E  +              K E    
Sbjct: 120 TEAKPEATNQGDESKPAAEANKTEKEVQPDVPKNTEKTLKPKEIKFNSWEELLKWEPGAR 179

Query: 660 LPLKPEPEILLPPKPEPELLLPPKPEPELLLP 691
                    ++        L+  K   E  + 
Sbjct: 180 EDDAINRGSVVLASRRTGHLVNEKASKEAKVQ 211

>3gdb_A Endo-D, putative uncharacterized protein SPR0440; alpha-beta-barrels, cell WALL, peptidoglycan-anchor, secreted, hydrolase; HET: PGE; 1.87A {Streptococcus pneumoniae} PDB: 2xqx_A Length = 937

 Score = 50.3 bits (119), Expect = 4e-06
 Identities = 25/207 (12%), Positives = 54/207 (26%), Gaps = 10/207 (4%)

Query: 427 EPTKPELPEVPELTKTQLPEVPEPTKPQILDKKEPVLLDKKEPVLLDKKEPVLPPKPEPE 486
              + E   VPE +      V   ++    +  +    ++ E    +K E         E
Sbjct: 17  LYFQGEETAVPENSGANTELVSGESEHSTNEADKQ---NEGEHARENKLEKAEGVATASE 73

Query: 487 ILLPPKPEPELLLPPKPEPELLLPPKLEPKLLLPPKSEPELLLPPKPEPELLLPPKPKPE 546
              P   E       +         K    +   P +E +      P+ +     KP+  
Sbjct: 74  TASPASNEAATTETAEAASAAKPEEKASEVVAETPSAEAK------PKSDKETEAKPEAT 127

Query: 547 LLLP-PKPEPEKLLLPPKPKPKLLLPPKPESELLLPPKPEPELIIPPKPEPEILIPPKPE 605
                 KP  E      + +P +    +   +         E ++  +P           
Sbjct: 128 NQGDESKPAAEANKTEKEVQPDVPKNTEKTLKPKEIKFNSWEELLKWEPGAREDDAINRG 187

Query: 606 PELLLPPKPEPEILLPPKPEPELLLPP 632
             +L   +    +      E ++    
Sbjct: 188 SVVLASRRTGHLVNEKASKEAKVQALS 214

>3gdb_A Endo-D, putative uncharacterized protein SPR0440; alpha-beta-barrels, cell WALL, peptidoglycan-anchor, secreted, hydrolase; HET: PGE; 1.87A {Streptococcus pneumoniae} PDB: 2xqx_A Length = 937

 Score = 49.2 bits (116), Expect = 9e-06
 Identities = 24/162 (14%), Positives = 39/162 (24%), Gaps = 8/162 (4%)

Query: 549 LPPKPEPEKLLLPPKPKPKLLLPPKPESELLLPPKPEPELIIPPKPEPEILIPPKPEPEL 608
           L  + E   +        +L+      S      + E E     K E           E 
Sbjct: 17  LYFQGEETAVPENSGANTELVSGESEHSTNEADKQNEGEHARENKLEKAE--GVATASET 74

Query: 609 LLPPKPEPEILLPPKPEPELLLPPKPEPEILLPPKPEPELLLPPKPESELLLPLKPEPEI 668
             P   E       +         K    +   P  E +      P+S+     KPE   
Sbjct: 75  ASPASNEAATTETAEAASAAKPEEKASEVVAETPSAEAK------PKSDKETEAKPEATN 128

Query: 669 LLPPKPEPELLLPPKPEPELLLPPKPETITTTKTLLLDKKEP 710
                         + E +  +P   E     K +  +  E 
Sbjct: 129 QGDESKPAAEANKTEKEVQPDVPKNTEKTLKPKEIKFNSWEE 170

>2yhs_A FTSY, cell division protein FTSY; cell cycle, protein targeting, simibi class GTPase, GTP-BIND membrane, nucleotide-binding; 1.60A {Escherichia coli} PDB: 2qy9_A 2xxa_B* 1fts_A Length = 503

 Score = 64.0 bits (156), Expect = 2e-10
 Identities = 31/175 (17%), Positives = 54/175 (30%), Gaps = 3/175 (1%)

Query: 281 KKPGEPEVQTPIVPE-PTKQELPEVPETTKPQLPEVPEPTKSQLPEVPEPTKPQLPEVLE 339
           +K   PE +T +  E P  +E+ +  E  K     V E  ++      E     + EV E
Sbjct: 17  QKEQTPEKETEVQNEQPVVEEIVQAQEPVKASEQAVEEQPQAHTEAEAETFAADVVEVTE 76

Query: 340 PTTLQLPEDPEPTKPQLPEDPEPTKPQLPEVPEPTKPQLPEVLEPTKLQLPEDPEPTKPQ 399
                    PE      PE      P+   +     P   +V        PE+ +     
Sbjct: 77  QVAESEKAQPEAEVVAQPEPVVEETPEPVAIEREELPLPEDVNAEA--VSPEEWQAEAET 134

Query: 400 LPEDPETTKPQLPEVPEPTKLQLPEVPEPTKPELPEVPELTKTQLPEVPEPTKPQ 454
           +       +    E     +L+     E  +  +  VP   + Q  E     + +
Sbjct: 135 VEIVEAAEEEAAKEEITDEELETALAAEAAEEAVMVVPPAEEEQPVEEIAQEQEK 189

>2ww5_A LYTC autolysin, 1,4-beta-N-acetylmuramidase; hydrolase, glycosidase, choline-binding protein; 1.61A {Streptococcus pneumoniae} PDB: 2wwd_A* 2wwc_A Length = 468

 Score = 63.2 bits (153), Expect = 3e-10
 Identities = 28/291 (9%), Positives = 69/291 (23%), Gaps = 67/291 (23%)

Query: 985  GAVPEIGQNYYFHQNQSQNYYYHQNLSQNYYYHQNLSLKYYCRRNLSQNYYCH---QNQS 1041
             +  +   +     +             +YY   +                        +
Sbjct: 17   SSSEQNQSSNKTQTSAEVQTNAAAYWDGDYYVKDD-------------GSKAQSEWIFDN 63

Query: 1042 PNNYYYHLN---------LSQNYYFHQN---QSQNYYYHQNLSQNYYYHQNLSLK----- 1084
                ++++N            NYY           + Y  N    +Y   + +       
Sbjct: 64   YYKAWFYINSDGRYSQNEWHGNYYLKSGGYMAQNEWIYDSNYKSWFYLKSDGAYAHQEWQ 123

Query: 1085 ------YYCRRN-------LSQNYYCHQNQS--QNYYYHQNQSQNYYY------------ 1117
                  YY ++           +Y+ +   +  QN + +      Y+Y            
Sbjct: 124  LIGNKWYYFKKWGYMAKSQWQGSYFLNGQGAMIQNEWLYDPAYSAYFYLKSDGTYANQEW 183

Query: 1118 HQNQSQKYYYHQN-------LSQNYYYHQNLSQNYYCHQNQSQNYYYHQNQSQKYYYHQN 1170
             +   + YY+ +           NYY   + +            Y +  +   K     N
Sbjct: 184  QKVGGKWYYFKKWGYMARNEWQGNYYLTGSGAMATDEVIMDGARYIFAASGELKEKKDLN 243

Query: 1171 LSQNCYYHQNRSQNYYYHQNLSQNYYYHQNQSQKNYYYHLNLSQNYYYHQN 1221
            +       +    N    Q  +++     + S+ N   +           +
Sbjct: 244  VGWVHRDGKRYFFNNREEQVGTEHAKKIIDISEHNGRINDWKKVIDENEVD 294

>2ww5_A LYTC autolysin, 1,4-beta-N-acetylmuramidase; hydrolase, glycosidase, choline-binding protein; 1.61A {Streptococcus pneumoniae} PDB: 2wwd_A* 2wwc_A Length = 468

 Score = 55.1 bits (132), Expect = 1e-07
 Identities = 33/227 (14%), Positives = 65/227 (28%), Gaps = 45/227 (19%)

Query: 1038 QNQSPNNYYYHLNLSQNYYFHQNQSQNYYYHQN--------LSQN-----YYYHQNLSLK 1084
              Q+ ++     +             +YY   +        +  N     +Y + +    
Sbjct: 19   SEQNQSSNKTQTSAEVQTNAAAYWDGDYYVKDDGSKAQSEWIFDNYYKAWFYINSD---G 75

Query: 1085 YYCRRNLSQNYYCHQN---QSQNYYYHQNQSQNYYYHQNQSQKYYYHQNLSQNYYYHQNL 1141
             Y +     NYY           + Y  N    +Y   + +  +   Q +   +YY    
Sbjct: 76   RYSQNEWHGNYYLKSGGYMAQNEWIYDSNYKSWFYLKSDGAYAHQEWQLIGNKWYY---F 132

Query: 1142 SQNYYCHQNQSQNYYYH-------------QNQSQKYYYHQNLSQNCYYHQNRSQ----N 1184
             +  Y  ++Q Q  Y+                    Y+Y   L  +  Y     Q     
Sbjct: 133  KKWGYMAKSQWQGSYFLNGQGAMIQNEWLYDPAYSAYFY---LKSDGTYANQEWQKVGGK 189

Query: 1185 YYYHQNLSQNYYYHQNQSQKNYYYHLNLSQNYYYHQNLSQNYYYHQN 1231
            +YY     +  Y  +N+ Q NYY   + +            Y +  +
Sbjct: 190  WYY---FKKWGYMARNEWQGNYYLTGSGAMATDEVIMDGARYIFAAS 233

>2ww5_A LYTC autolysin, 1,4-beta-N-acetylmuramidase; hydrolase, glycosidase, choline-binding protein; 1.61A {Streptococcus pneumoniae} PDB: 2wwd_A* 2wwc_A Length = 468

 Score = 43.2 bits (101), Expect = 5e-04
 Identities = 16/117 (13%), Positives = 46/117 (39%), Gaps = 7/117 (5%)

Query: 1120 NQSQKYYYHQNLSQNYYYHQNLSQNYYCHQNQSQNYYYHQNQSQKYYYHQN--LSQNCYY 1177
            N+++     Q+ +      +    +     +              YY   +   +Q+ + 
Sbjct: 1    NETEVAKTSQDTTTASSSSEQNQSSNKTQTSAEVQTNAAAYWDGDYYVKDDGSKAQSEWI 60

Query: 1178 HQNRSQNYYYHQNLSQNYYYHQNQSQKNYYYHLN--LSQNYYYHQNLSQNYYYHQNS 1232
              N  + ++Y   ++ +  Y QN+   NYY      ++QN + + +  ++++Y ++ 
Sbjct: 61   FDNYYKAWFY---INSDGRYSQNEWHGNYYLKSGGYMAQNEWIYDSNYKSWFYLKSD 114

>3fip_A Outer membrane usher protein PAPC; beta barrel, protein translocase, cell membrane, cell outer fimbrium, transmembrane, transport; 3.15A {Escherichia coli} PDB: 2vqi_A* Length = 493

 Score = 62.2 bits (151), Expect = 5e-10
 Identities = 39/267 (14%), Positives = 77/267 (28%), Gaps = 65/267 (24%)

Query: 971  LVYKDKYTGVG-------GYFGAV-PEIGQN--YYFHQNQSQNYYYHQNLSQNY-YYHQN 1019
             V    Y  +        G  G +  +I Q+      +   Q   +  + S+ +     +
Sbjct: 233  AVLAGDYNALAAGAGWDLGVPGTLSADITQSVARIEGERTFQGKSWRLSYSKRFDNADAD 292

Query: 1020 LSLKYYCRRNLSQNYY----CHQNQSPNNYYYH------LNLSQN--------------- 1054
            ++   Y  R   +NY         +  N+Y         + L++N               
Sbjct: 293  ITFAGY--RFSERNYMTMEQYLNARYRNDYSSREKEMYTVTLNKNVADWNTSFNLQYSRQ 350

Query: 1055 YYFHQNQSQNYYYHQNLSQNYYYHQNLSLKYYCRRNLSQNYYCHQNQSQNYYY------- 1107
             Y+   ++  Y    N   N +  Q +++       LS +   +  +  +  Y       
Sbjct: 351  TYWDIRKTDYYTVSVNRYFNVFGLQGVAV------GLSASRSKYLGRDNDSAYLRISVPL 404

Query: 1108 ---HQNQSQNYYYHQNQSQKYYYHQNLSQNYYYHQNLSQNYYCHQNQSQNYYYHQNQSQK 1164
                 + S +    +  +   Y          Y  +L+         S      Q Q   
Sbjct: 405  GTGTASYSGSMSNDRYVNMAGYTDTFNDGLDSY--SLNAGL-----NSGGGLTSQRQINA 457

Query: 1165 YYYHQ----NLSQNCYYHQNRSQNYYY 1187
            YY H+    NLS N    Q    ++  
Sbjct: 458  YYSHRSPLANLSANIASLQKGYTSFGV 484

>3fip_A Outer membrane usher protein PAPC; beta barrel, protein translocase, cell membrane, cell outer fimbrium, transmembrane, transport; 3.15A {Escherichia coli} PDB: 2vqi_A* Length = 493

 Score = 61.1 bits (148), Expect = 1e-09
 Identities = 31/216 (14%), Positives = 69/216 (31%), Gaps = 43/216 (19%)

Query: 1046 YYHLNLSQNYY-----------------FHQNQSQNYYYHQNLSQNYYYHQNLSLKYYCR 1088
            Y    L+ +Y                      QS      +   Q   +  + S K +  
Sbjct: 230  YGGAVLAGDYNALAAGAGWDLGVPGTLSADITQSVARIEGERTFQGKSWRLSYS-KRFDN 288

Query: 1089 RNLSQNYYCHQNQSQNYY-YHQNQSQNYYYHQNQSQKYYYHQNLSQNYY-YHQNLSQNYY 1146
             +    +  ++   +NY    Q  +  Y    +  +K  Y   L++N   ++ + +  Y 
Sbjct: 289  ADADITFAGYRFSERNYMTMEQYLNARYRNDYSSREKEMYTVTLNKNVADWNTSFNLQY- 347

Query: 1147 CHQNQSQNYYYHQNQSQKYYYHQNLSQNCYYHQNRSQNYYYHQNLSQNYYYHQNQS--QK 1204
                 S+  Y+   ++  Y     +S N Y++    Q               +++   + 
Sbjct: 348  -----SRQTYWDIRKTDYY----TVSVNRYFNVFGLQGVAV------GLSASRSKYLGRD 392

Query: 1205 NYYYHLNLS-----QNYYYHQNLSQNYYYHQNSFTS 1235
            N   +L +S         Y  ++S + Y +   +T 
Sbjct: 393  NDSAYLRISVPLGTGTASYSGSMSNDRYVNMAGYTD 428

>2v05_A Choline binding protein F; CBPF, lipid-binding-protein; 1.67A {Streptococcus pneumoniae} PDB: 2v04_A 2x8m_A* 2x8o_A* 2x8p_A* 2vyu_A Length = 311

 Score = 60.6 bits (147), Expect = 9e-10
 Identities = 39/290 (13%), Positives = 69/290 (23%), Gaps = 83/290 (28%)

Query: 991  GQNYYFHQN----------QSQNYYYHQNLSQN------------YYYHQN--------- 1019
            G+ YYF             +     Y  NL  N            YY+ Q+         
Sbjct: 31   GKTYYFGDIGEMVVGWQYLEIPGTGYRDNLFDNQPVNEIGLQEKWYYFGQDGALLEQTDK 90

Query: 1020 LSLKYYCRRNLSQNYYCHQNQSPNNYYYHLNLSQNYY----FHQNQSQNYYYHQN--LSQ 1073
              L+     N  + Y      S     Y+ +   NY     +       YY ++      
Sbjct: 91   QVLEAKTSENTGKVYGEQYPLSAEKRTYYFD--NNYAVKTGWIYEDGNWYYLNKLGNFGD 148

Query: 1074 NYYYHQNLSLKYYCRRNLSQNYYCHQNQSQNYYYHQNQSQNYYYHQNQSQKYYYHQNLSQ 1133
            + Y                      Q+        +++   +YY     +     Q ++ 
Sbjct: 149  DSYNPLP---------IGEVAKGWTQDFHVTIDIDRSKPAPWYYLDASGKMLTDWQKVNG 199

Query: 1134 NYYY-----------HQNLSQNYYCHQN---------QSQNYYYHQNQS----------- 1162
             +YY                + YY                N +Y+   S           
Sbjct: 200  KWYYFGSSGSMATGWKYVRGKWYYLDNKNGDMKTGWQYLGNKWYYLRSSGAMVTGWYQDG 259

Query: 1163 -QKYYYHQNLSQNCYYHQNRSQNYYYHQNLSQNYYYHQNQSQKNYYYHLN 1211
               YY +             +  +YY      +     N +   Y  + N
Sbjct: 260  LTWYYLNAGNGDMKTGWFQVNGKWYY---AYSSGALAVNTTVDGYSVNYN 306

>2v05_A Choline binding protein F; CBPF, lipid-binding-protein; 1.67A {Streptococcus pneumoniae} PDB: 2v04_A 2x8m_A* 2x8o_A* 2x8p_A* 2vyu_A Length = 311

 Score = 53.7 bits (129), Expect = 2e-07
 Identities = 26/199 (13%), Positives = 55/199 (27%), Gaps = 32/199 (16%)

Query: 1043 NNYYYHLNLSQNYYFHQNQSQNYYYHQN--LSQNYYYHQNLSLKYYCRRNLSQNYYCHQN 1100
            N  YY  +  +  Y+H+   + YY+     +   + Y +                     
Sbjct: 12   NRKYYVKDDHKAIYWHKIDGKTYYFGDIGEMVVGWQYLEI------------PGTG---- 55

Query: 1101 QSQNYYYHQNQSQNYYYHQNQSQKYYYHQN-LSQNYYYHQNLSQNYYCHQNQSQNYYYHQ 1159
                Y  +   +Q       Q + YY+ Q+         Q L      +  +     Y  
Sbjct: 56   ----YRDNLFDNQPVNEIGLQEKWYYFGQDGALLEQTDKQVLEAKTSENTGKVYGEQYPL 111

Query: 1160 NQSQKYYYHQNLSQNCY----YHQNRSQNYYYHQN--LSQNYYYHQNQSQKNYYYHLNLS 1213
            +  ++ YY      N      +       YY ++      + Y      +    +  +  
Sbjct: 112  SAEKRTYY---FDNNYAVKTGWIYEDGNWYYLNKLGNFGDDSYNPLPIGEVAKGWTQDFH 168

Query: 1214 QNYYYHQNLSQNYYYHQNS 1232
                  ++    +YY   S
Sbjct: 169  VTIDIDRSKPAPWYYLDAS 187

>2j8g_A Lysozyme; antimicrobial, muein hydrolase, bacteriolytic enzyme, pneumococcal cell WALL degradation, hydrolase, glycosidase, multimodular; HET: NAG AMV; 1.69A {Bacteriophage cp-1} SCOP: b.109.1.1 c.1.8.8 PDB: 2ixv_A* 2j8f_A* 2ixu_A* 1h09_A 1oba_A Length = 339

 Score = 59.2 bits (143), Expect = 3e-09
 Identities = 31/233 (13%), Positives = 67/233 (28%), Gaps = 54/233 (23%)

Query: 1002 QNYYYHQNLSQNYYYHQNLSLKYYCRRNLSQNYYCHQNQSPNNYYYHLNLSQNYYFHQNQ 1061
            +  YY    S   + H N+  +                Q PN+ +        Y  +   
Sbjct: 121  KPIYY----SYKPFTHDNVDYQQI------------LAQFPNSLWI-----AGYGLNDGT 159

Query: 1062 SQNYYYHQNLSQNYYYHQNLSLKYYCRRNLSQNYYCHQNQSQNYYYHQNQSQNYYYHQNQ 1121
            +   Y+       ++ + +     + +  +  +            + Q+    ++   N 
Sbjct: 160  ANFEYFPSMDGIRWWQYSS---NPFDKNIVLLDDEEDDKPKTAGTWKQDSKGWWFRRNNG 216

Query: 1122 SQKYYYHQNLSQNYYYHQNLSQNYYCHQNQSQNYYYHQNQSQKYYYHQNLSQNCYYHQNR 1181
            S  Y   + +   +YY        YC  ++          ++K+YY   L  N       
Sbjct: 217  SFPYNKWEKIGGVWYY---FDSKGYCLTSEWLKD------NEKWYY---LKDNGAMATGW 264

Query: 1182 SQ---NYYYH----------QNLSQNYYYHQNQS---QKNYYYHLNLSQNYYY 1218
                  +YY                N+YY  N+      N +      + +Y+
Sbjct: 265  VLVGSEWYYMDDSGAMVTGWVKYKNNWYYMTNERGNMVSNEFIKSG--KGWYF 315

>2j8g_A Lysozyme; antimicrobial, muein hydrolase, bacteriolytic enzyme, pneumococcal cell WALL degradation, hydrolase, glycosidase, multimodular; HET: NAG AMV; 1.69A {Bacteriophage cp-1} SCOP: b.109.1.1 c.1.8.8 PDB: 2ixv_A* 2j8f_A* 2ixu_A* 1h09_A 1oba_A Length = 339

 Score = 51.5 bits (123), Expect = 9e-07
 Identities = 22/181 (12%), Positives = 44/181 (24%), Gaps = 54/181 (29%)

Query: 1094 NYYCHQNQSQNYYYHQNQSQNYYYHQNQSQKYYYHQNLS--------------QNYYYHQ 1139
              +        Y          YY    S K + H N+                 Y  + 
Sbjct: 109  LRFMQMIADAGYK-------PIYY----SYKPFTHDNVDYQQILAQFPNSLWIAGYGLND 157

Query: 1140 NLSQNYYCHQNQSQNYYYHQNQSQKYYYHQNLSQNCYYH--------QNRSQNYYYHQNL 1191
              + N+    +     ++  + +        L               Q+    ++   N 
Sbjct: 158  G-TANFEYFPSMDGIRWWQYSSNPFDKNIVLLDDEEDDKPKTAGTWKQDSKGWWFRRNNG 216

Query: 1192 SQNYYYHQNQSQKNYYYH----------LNLSQNYYYH----------QNLSQNYYYHQN 1231
            S  Y   +      YY+           L  ++ +YY             +   +YY  +
Sbjct: 217  SFPYNKWEKIGGVWYYFDSKGYCLTSEWLKDNEKWYYLKDNGAMATGWVLVGSEWYYMDD 276

Query: 1232 S 1232
            S
Sbjct: 277  S 277

>2j8g_A Lysozyme; antimicrobial, muein hydrolase, bacteriolytic enzyme, pneumococcal cell WALL degradation, hydrolase, glycosidase, multimodular; HET: NAG AMV; 1.69A {Bacteriophage cp-1} SCOP: b.109.1.1 c.1.8.8 PDB: 2ixv_A* 2j8f_A* 2ixu_A* 1h09_A 1oba_A Length = 339

 Score = 51.1 bits (122), Expect = 1e-06
 Identities = 28/215 (13%), Positives = 67/215 (31%), Gaps = 20/215 (9%)

Query: 1001 SQNYYYHQNL---SQNYYYHQNLSLKYYCRRNLSQNYYCHQNQSPNNYYYHLNLSQNYYF 1057
            S   + H N+        +  +L +  Y   + + N+    +     ++ +   S N + 
Sbjct: 126  SYKPFTHDNVDYQQILAQFPNSLWIAGYGLNDGTANFEYFPSMDGIRWWQY---SSNPFD 182

Query: 1058 HQNQSQNYYYHQNLSQNYYYHQNLSLKYYCRRNLSQNYYCHQNQSQNYYYHQNQSQNYYY 1117
                  +            + Q+    ++ R N S  Y   +     +YY  +       
Sbjct: 183  KNIVLLDDEEDDKPKTAGTWKQDSKGWWFRRNNGSFPYNKWEKIGGVWYYF-DSKGYCLT 241

Query: 1118 H--QNQSQKYYYHQNLSQNYYYHQNLSQN----YYCHQNQSQNYYYHQNQSQKYYYHQN- 1170
                  ++K+YY   L  N              YY   + +    + + ++  YY     
Sbjct: 242  SEWLKDNEKWYY---LKDNGAMATGWVLVGSEWYYMDDSGAMVTGWVKYKNNWYYMTNER 298

Query: 1171 -LSQNCYYHQNRSQNYYYHQN--LSQNYYYHQNQS 1202
                +  + ++    Y+ + N  L+ N  + +   
Sbjct: 299  GNMVSNEFIKSGKGWYFMNTNGELADNPSFTKEPD 333

>2hr7_A Insulin receptor; hormone receptor, leucine rich repeat, transferase; HET: NAG BMA MAN FUC P33; 2.32A {Homo sapiens} Length = 486

 Score = 54.9 bits (131), Expect = 1e-07
 Identities = 25/234 (10%), Positives = 53/234 (22%), Gaps = 31/234 (13%)

Query: 995  YFHQNQSQNYYYHQNLS------QNYYYHQNLSLKYYCRRNLSQNYYCHQNQSPN--NYY 1046
               +N    Y    + S      ++ +   N      C            N      N  
Sbjct: 118  RIEKNNELCYLATIDWSRILDSVEDNHIVLNKDDNEECGDICPGTAKGKTNCPATVINGQ 177

Query: 1047 YHLNLSQNYYFHQNQSQNYYYHQNLSQNYYYHQNLSLKYYCRRNLSQNYYCHQNQSQNYY 1106
            +      + +  +        H   ++    H        C  N SQ     +  +   +
Sbjct: 178  FVERCWTHSHCQKVCPTICKSHGCTAEGLCCHSE------CLGNCSQPDDPTKCVACRNF 231

Query: 1107 YHQNQ-----SQNYYYHQNQSQKYYYHQNLSQNYYYHQNLSQNYYCHQNQSQNYYYHQNQ 1161
            Y   +        YY+ Q+     +   N S          +     +     Y  H N+
Sbjct: 232  YLDGRCVETCPPPYYHFQD-----WRCVNFSFC---QDLHHKCKNSRRQGCHQYVIHNNK 283

Query: 1162 SQKY----YYHQNLSQNCYYHQNRSQNYYYHQNLSQNYYYHQNQSQKNYYYHLN 1211
                    Y   + +  C           +     +      +  +      +N
Sbjct: 284  CIPECPSGYTMNSSNLLCTPCLGPCPKVCHLLEGEKTIDSVTSAQELRGCTVIN 337

>2hr7_A Insulin receptor; hormone receptor, leucine rich repeat, transferase; HET: NAG BMA MAN FUC P33; 2.32A {Homo sapiens} Length = 486

 Score = 49.5 bits (117), Expect = 6e-06
 Identities = 20/170 (11%), Positives = 46/170 (27%), Gaps = 17/170 (10%)

Query: 1076 YYHQNLSLKYYCRRNLSQNYYCHQNQSQNYYYHQNQSQNYYYHQNQSQKYYYHQNLSQ-- 1133
               +N  L Y      + ++    +  ++ +   N+  N               N     
Sbjct: 118  RIEKNNELCYLA----TIDWSRILDSVEDNHIVLNKDDNEECGDICPGTAKGKTNCPATV 173

Query: 1134 -NYYYHQNLSQNYYCHQNQSQNYYYHQNQSQKYYYHQNLSQNCYYHQNRSQ----NYYYH 1188
             N  + +    + +C +        H   ++    H     NC    + ++      +Y 
Sbjct: 174  INGQFVERCWTHSHCQKVCPTICKSHGCTAEGLCCHSECLGNCSQPDDPTKCVACRNFYL 233

Query: 1189 QNL-----SQNYYYHQNQSQKNYYY-HLNLSQNYYYHQNLSQNYYYHQNS 1232
                       YY+ Q+    N+ +      +     +     Y  H N 
Sbjct: 234  DGRCVETCPPPYYHFQDWRCVNFSFCQDLHHKCKNSRRQGCHQYVIHNNK 283

>3aj6_A Main hemagglutinin component; toxin, beta-trefoil; HET: NGA; 1.48A {Clostridium botulinum} PDB: 1qxm_A 3aj5_A* 2ehm_A* 2ehi_A* 2ehn_A* 3ah1_A* 3ah2_A* 3ah4_A* 2e4m_A Length = 286

 Score = 52.9 bits (126), Expect = 2e-07
 Identities = 32/258 (12%), Positives = 75/258 (29%), Gaps = 29/258 (11%)

Query: 979  GVGGYFGAVPEIGQNYYFHQNQSQN---YYYHQNLSQNYYYHQNLSLKYYCRRNLSQNYY 1035
                 F   P    N    +        +      +Q +    + + + Y  + +     
Sbjct: 10   RNNEVFFISPSNNTNKVLDKISQSEVKLWNKLSGANQKWRLIYDTNKQAYKIKVMDNTSL 69

Query: 1036 CHQNQSPNNYYYHLNLSQNYYFHQNQSQNYYYHQNLSQNYYYHQNLSLKYYCRRNLSQNY 1095
                 +P +     ++S         +Q +Y  QN            ++ Y   NL   Y
Sbjct: 70   ILTWNAPLS-----SVSV-KTDTNGDNQYWYLLQNYISRNVI-----IRNYMNPNLVLQY 118

Query: 1096 YCHQNQSQNYYYHQNQSQNYYYHQNQSQKYYYHQNLSQNYYYHQNLSQNYYCHQNQS--- 1152
                          + +Q + +     +        ++N      L+ + +  +N +   
Sbjct: 119  NIDDTL-MVSTQTSSSNQFFKFSNCIYEALN-----NRNCKLQTQLNSDRFLSKNLNSQI 172

Query: 1153 -QNYYYHQNQSQKYYYHQNLSQNCYYHQNRSQNYYY-----HQNLSQNYYYHQNQSQKNY 1206
               + +  +  QK+    N +++ Y  + +  N Y        N  + Y    +  Q   
Sbjct: 173  IVLWQWIDSSRQKWIIEYNETKSAYTLKCQENNRYLTWIQNSNNYVETYQSTDSLIQYWN 232

Query: 1207 YYHLNLSQNYYYHQNLSQ 1224
              +L+   + Y   NL  
Sbjct: 233  INYLDNDASKYILYNLQD 250

>2bib_A CBPE, teichoic acid phosphorylcholine esterase/ choline protein; choline-binding protein, PCE, phosphorylcholine estera hydrolase; HET: PC BTB; 1.92A {Streptococcus pneumoniae} SCOP: b.109.1.1 d.157.1.8 PDB: 1wra_A* Length = 547

 Score = 52.4 bits (125), Expect = 8e-07
 Identities = 37/320 (11%), Positives = 98/320 (30%), Gaps = 54/320 (16%)

Query: 952  PHHSPIPPPPPVLNPPNSELVYKDKYTGVGGYFGAVPEIGQNYYFHQN-----QSQNYYY 1006
             H   I     +L+    + VY  KY+           +  N Y +              
Sbjct: 86   THSDHIGNVDELLSTYPVDRVYLKKYSD--SRITNSERLWDNLYGYDKVLQTATETGVSV 143

Query: 1007 HQNLSQNYYYHQ--NLSLKYYCRRNLSQNYYCHQNQSPNNYY---YHLNLSQNYYFHQNQ 1061
             QN++Q   + Q  ++ ++ Y   N + +    +    +N       + ++    +    
Sbjct: 144  IQNITQGDAHFQFGDMDIQLYNYENETDSSGELKKIWDDNSNSLISVVKVNGKKIYLGGD 203

Query: 1062 SQNYYYHQNLSQNYYYHQNLSLKYYCRRNLSQNYYCHQNQSQNYYYHQN-----QSQNYY 1116
              N +  ++         +L +K+    + +++       ++++  + +     Q+ +  
Sbjct: 204  LDNVHGAEDKYGPLIGKVDL-MKFNHHHDTNKSN------TKDFIKNLSPSLIVQTSDSL 256

Query: 1117 YHQNQSQKYYYHQNLSQNYYYHQNLSQNYYCHQNQSQNYYYHQNQSQKYYYHQNLSQNCY 1176
              +N      Y   L +      N +   Y             N S  Y    +     +
Sbjct: 257  PWKNGV-DSEYVNWLKERGIERINAASKDYDATVFDIRKDGFVNISTSYKPIPSFQAGWH 315

Query: 1177 YHQNRSQNYYYHQNLS------------QNYYYHQN---------QSQKNYYYHLNLSQN 1215
                    +Y   + +            + YY++Q          +   +++Y   L+ +
Sbjct: 316  KSAY-GNWWYQAPDSTGEYAVGWNEIEGEWYYFNQTGILLQNQWKKWNNHWFY---LTDS 371

Query: 1216 YYYHQNLSQN----YYYHQN 1231
                +N  +     YY+++ 
Sbjct: 372  GASAKNWKKIDGIWYYFNKE 391

>2bib_A CBPE, teichoic acid phosphorylcholine esterase/ choline protein; choline-binding protein, PCE, phosphorylcholine estera hydrolase; HET: PC BTB; 1.92A {Streptococcus pneumoniae} SCOP: b.109.1.1 d.157.1.8 PDB: 1wra_A* Length = 547

 Score = 50.1 bits (119), Expect = 4e-06
 Identities = 32/269 (11%), Positives = 83/269 (30%), Gaps = 44/269 (16%)

Query: 973  YKDKYTGVGGYFGAVPEIGQNYYFHQNQSQNYYYHQNLSQNYYYHQNLSLKYYCRRNLSQ 1032
                  GV   +    +       +           ++ ++ + + + S K         
Sbjct: 255  SLPWKNGVDSEYVNWLKERGIERINAASKDYDATVFDIRKDGFVNISTSYKPI------P 308

Query: 1033 NYYCHQNQSPNNYYYHLNLSQNYY----FHQNQSQNYYYHQ--NLSQNYYYHQNLSLKYY 1086
            ++    ++S    +++            +++ + + YY++Q   L QN +   N +  +Y
Sbjct: 309  SFQAGWHKSAYGNWWYQAPDSTGEYAVGWNEIEGEWYYFNQTGILLQNQWKKWN-NHWFY 367

Query: 1087 CRRNLSQNYYCHQNQSQNYYYHQNQSQNYYYHQNQSQKYYYHQN-------LSQN---YY 1136
               + +      +     YY+++       + Q++ Q YY   +       L      YY
Sbjct: 368  LTDSGASAKNWKKIDGIWYYFNKENQMEIGWVQDKEQWYYLDVDGSMKTGWLQYMGQWYY 427

Query: 1137 YHQN-------LSQN---YYCHQNQSQNYYYHQNQSQKYYYHQNLSQNCYYH---QNRSQ 1183
            +  +       +      YY            +   Q YY    L  +         ++ 
Sbjct: 428  FAPSGEMKMGWVKDKETWYYMDSTGVMKTGEIEVAGQHYY----LEDSGAMKQGWHKKAN 483

Query: 1184 NYYYHQNLSQNYYYHQNQSQ-KNYYYHLN 1211
            ++Y+      +        + K+ +Y L 
Sbjct: 484  DWYF---YKTDGSRAVGWIKDKDKWYFLK 509

>2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646} Length = 293

 Score = 51.3 bits (122), Expect = 9e-07
 Identities = 19/241 (7%), Positives = 59/241 (24%), Gaps = 9/241 (3%)

Query: 994  YYFHQNQSQNYYYHQNLSQNYYYHQNLSLKYYCRRNLSQNYYCHQNQSPNNYYYHLNLSQ 1053
                      Y                 +   C++   +  Y           YH    Q
Sbjct: 54   AKLQIPIIHFYEVLIYSDIERKKQFKDQVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQ 113

Query: 1054 NYYFHQNQSQNYYYHQNLSQNYYYHQNLSLKYYCRRNLSQNYYCHQNQSQNYYYHQNQSQ 1113
               +    +       +        + L  +     ++ QN Y     +  Y  +    +
Sbjct: 114  FLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLYIENAIANIYAENGYLKK 173

Query: 1114 NYYYHQ---NQSQKYYYHQNLSQNYYYHQNLSQNYYCHQNQSQNYYYHQNQSQKYYYHQN 1170
                 +    Q +  + ++       Y  N ++  Y      ++ Y      +      +
Sbjct: 174  GIDLFEQILKQLEALHDNEEFDVKVRY--NHAKALYLDSRYEESLYQVNKAIEISCRINS 231

Query: 1171 LSQNCYYHQNRSQNYYYHQNLSQNYYYHQNQSQKNYYYHLNLSQNYYYHQNLSQNYYYHQ 1230
            ++     +  R +     +           ++   +    ++ + + Y + L       +
Sbjct: 232  MALIGQLYYQRGECLRKLEYEEAEIEDAYKKASFFF----DILEMHAYKEALVNKISRLE 287

Query: 1231 N 1231
            +
Sbjct: 288  H 288

>2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646} Length = 293

 Score = 47.8 bits (113), Expect = 1e-05
 Identities = 20/212 (9%), Positives = 46/212 (21%), Gaps = 4/212 (1%)

Query: 1022 LKYYCRRNLSQNYYCHQNQSPNNYYYHLNLSQNYYFHQNQSQNYYYHQNLSQNYYYHQNL 1081
            +    +  +   Y               +        +   + Y    N  +   YH   
Sbjct: 52   IAAKLQIPIIHFYEVLIYSDIERKKQFKDQVIMLCKQKRYKEIYNKVWNELKKEEYHPEF 111

Query: 1082 SLKYYCRRNLSQNYYCHQNQSQNYYYHQNQSQNYYYHQNQSQKYYYHQNLSQNYYYHQNL 1141
                  +  ++       +        +          +  Q  Y    ++  Y  +  L
Sbjct: 112  QQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLYIENAIANIYAENGYL 171

Query: 1142 SQ-NYYCHQNQSQNYYYHQNQSQKYYYHQNLSQNCYYHQNRSQNYYYHQNLSQNYYYHQN 1200
             +      Q   Q    H N+        N +    Y  +R +   Y  N +       N
Sbjct: 172  KKGIDLFEQILKQLEALHDNEEFDVKVRYNHA-KALYLDSRYEESLYQVNKAIEISCRIN 230

Query: 1201 QSQKNYYYHLNLSQNYYYHQNLSQ--NYYYHQ 1230
                    +    +     +         Y +
Sbjct: 231  SMALIGQLYYQRGECLRKLEYEEAEIEDAYKK 262

>2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646} Length = 293

 Score = 45.2 bits (106), Expect = 7e-05
 Identities = 18/217 (8%), Positives = 55/217 (25%), Gaps = 7/217 (3%)

Query: 993  NYYFHQNQSQNYYYHQNLSQNYYYHQNLSLKYYCRRNLSQNYYCHQNQSPNNYYYHLNLS 1052
                 Q + +  Y           +     ++   +     Y   +            L 
Sbjct: 83   IMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLL 142

Query: 1053 QNYYFHQNQSQNYYYHQNLSQNYYYHQNLSL-KYYCRRNLSQNYYCHQNQSQNYYYHQNQ 1111
                   +  QN Y    ++  Y  +  L        + L Q    H N+  +     N 
Sbjct: 143  NQQLTGIDVYQNLYIENAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNH 202

Query: 1112 SQNYYYHQNQSQKYYYHQNLSQNYYYHQNLSQNYYCHQNQSQNYYYHQNQSQKYYYHQNL 1171
            ++  Y      +  Y      +      +++     +  + +     + +  +       
Sbjct: 203  AKALYLDSRYEESLYQVNKAIEISCRINSMALIGQLYYQRGECLRKLEYEEAEIEDAYKK 262

Query: 1172 SQNCYYHQNRSQNYYYHQNLSQNYYYHQNQSQKNYYY 1208
            +   +        + Y + L       ++    ++++
Sbjct: 263  ASFFFDILE---MHAYKEALVNKISRLEH---HHHHH 293

>2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646} Length = 293

 Score = 44.0 bits (103), Expect = 2e-04
 Identities = 18/199 (9%), Positives = 47/199 (23%), Gaps = 7/199 (3%)

Query: 989  EIGQNYYFHQNQSQNYYYHQNLSQNYYYHQNLSLKYYCRRNLSQNYYCHQNQSPNNYYYH 1048
               +   +H    Q   +   ++       +        + L                Y 
Sbjct: 100  NELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQL--TGIDVYQNLYI 157

Query: 1049 LNLSQNYYFHQNQSQ--NYYYHQNLSQNYYYHQNLSLKYYCRRNLSQNYYCHQNQSQNYY 1106
             N   N Y      +     + Q L Q    H N       R N ++  Y      ++ Y
Sbjct: 158  ENAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLY 217

Query: 1107 YHQNQSQNYYYHQNQSQKYYYHQNLSQNYYYHQNLSQNYYCHQNQSQNYYYHQNQSQKYY 1166
                  +      + +     +    +     +           ++  ++        + 
Sbjct: 218  QVNKAIEISCRINSMALIGQLYYQRGECLRKLEYEEAEIEDAYKKASFFFDILE---MHA 274

Query: 1167 YHQNLSQNCYYHQNRSQNY 1185
            Y + L       ++   ++
Sbjct: 275  YKEALVNKISRLEHHHHHH 293

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 51.4 bits (122), Expect = 2e-06
 Identities = 52/323 (16%), Positives = 91/323 (28%), Gaps = 92/323 (28%)

Query: 19  LKPFLLMKLDLEKVRPVQTYVAYG------TDITVPT-NIYNVQCFSST-----TVEHSR 66
           L+P+L ++  L ++RP +  +  G      T + +     Y VQC          +++  
Sbjct: 134 LQPYLKLRQALLELRPAKNVLIDGVLGSGKTWVALDVCLSYKVQCKMDFKIFWLNLKNCN 193

Query: 67  RPKNTQLHQDSSHGNILETKPPNLLQQNKSHENIPENSET------------PTPN---- 110
            P+            +L    PN   ++    NI     +            P  N    
Sbjct: 194 SPETVLEMLQ----KLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLLV 249

Query: 111 LDGTGQLNDNNKSVIKWFLENVECLLDYLVQQKETANVNSADLVNNRENVVKPVERKDGK 170
           L      N  N      F  N+ C +  L+    T      D ++        ++     
Sbjct: 250 LL-----NVQNAKAWNAF--NLSCKI--LLT---TRFKQVTDFLSAATTTHISLDHHSM- 296

Query: 171 ETTEKETGKIAGNGTTKEETEGTFAKLADSETN--PTEVAERTAP-------ESSKRTDS 221
                          T +E +    K  D      P E    T P       ES +  D 
Sbjct: 297 -------------TLTPDEVKSLLLKYLDCRPQDLPRE-VLTTNPRRLSIIAESIR--DG 340

Query: 222 KEDIEN----RVDNNDGTIATD-EALKAIESQRRVKRRA---------AKT-----RDKI 262
               +N      D     I +    L+  E ++   R +                  D I
Sbjct: 341 LATWDNWKHVNCDKLTTIIESSLNVLEPAEYRKMFDRLSVFPPSAHIPTILLSLIWFDVI 400

Query: 263 K---ENIDPELGNLSDLNEDLKK 282
           K     +  +L   S + +  K+
Sbjct: 401 KSDVMVVVNKLHKYSLVEKQPKE 423

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 50.6 bits (120), Expect = 3e-06
 Identities = 49/352 (13%), Positives = 97/352 (27%), Gaps = 106/352 (30%)

Query: 754  DKKEPVLLDKKERVL--LDKKEPVLLDKKEPVLLDKKEHVLLDKKETVLLDKKEP-VLLD 810
                  +L+  +++L  +D       D    + L    H +  +   +L  K     LL 
Sbjct: 192  CNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRI--HSIQAELRRLLKSKPYENCLL- 248

Query: 811  KKEPILLDKKEPVLLDKKEPVLLDKKSPVLLDKKGPVILD------KKEPVLLDKKEPVL 864
                +LL+ +     +       +    +LL  +   + D           L      + 
Sbjct: 249  ----VLLNVQNAKAWNA-----FNLSCKILLTTRFKQVTDFLSAATTTHISLDHHSMTLT 299

Query: 865  LDKKEPVL---LDKKA---PVLLDKKEPVLLD------KKEPVLLDKKEPVLLDKKEPIL 912
             D+ + +L   LD +    P  +    P  L       +      D  + V  DK   I+
Sbjct: 300  PDEVKSLLLKYLDCRPQDLPREVLTTNPRRLSIIAESIRDGLATWDNWKHVNCDKLTTII 359

Query: 913  FEKAALKVQTKPEVFKVPPKDKDEDEPIFFNEPKSPPEKPHHSPIPPPPPVL-----NPP 967
              +++L V    E      +   +   +F          P  + IP    +L     +  
Sbjct: 360  --ESSLNVLEPAEY-----RKMFDRLSVF----------PPSAHIPTI--LLSLIWFDVI 400

Query: 968  NSE------------LVYKDKYTGVGGYFGAVPEIGQNYYFH-------QNQSQNYYYHQ 1008
             S+            LV K                                    Y  H+
Sbjct: 401  KSDVMVVVNKLHKYSLVEKQPKEST-------------ISIPSIYLELKVKLENEYALHR 447

Query: 1009 NLSQNYYYHQNLSLKYYCRRNLSQNYYCHQNQSPNNYY-----YHLNLSQNY 1055
            ++  +Y        K +   +L   Y        + Y+     +HL   ++ 
Sbjct: 448  SIVDHYNIP-----KTFDSDDLIPPYL-------DQYFYSHIGHHLKNIEHP 487

>3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis} Length = 378

 Score = 50.6 bits (121), Expect = 2e-06
 Identities = 24/201 (11%), Positives = 58/201 (28%), Gaps = 32/201 (15%)

Query: 1038 QNQSPNNYYYHLNLSQNYYFHQNQSQNYYYHQNLSQNYYYHQNLSLKYYCRRNLSQNYYC 1097
            ++Q    YY  +           +    Y ++              K             
Sbjct: 47   EDQDLLIYYSLMCFRHQLMLDYLEPGKTYGNRPTVTELLETIETPQKKL----------- 95

Query: 1098 HQNQSQNYYYHQNQSQNYYYHQNQSQK--YYYHQ--NLSQNYYYHQNLSQNYYCHQNQSQ 1153
                   YY    +   Y + Q +  +   YY +              ++ ++     + 
Sbjct: 96   --TGLLKYYSLFFRG-MYEFDQKEYVEAIGYYREAEKELPFVSDDIEKAEFHF---KVA- 148

Query: 1154 NYYYHQNQSQK--YYYHQNL---SQNCYYHQNRSQNYYYHQNLSQNYYYHQN--QSQKNY 1206
              YYH  Q+    Y+  Q L     +  Y     Q+ +    ++ NY   ++  ++  + 
Sbjct: 149  EAYYHMKQTHVSMYHILQALDIYQNHPLYSIRTIQSLF---VIAGNYDDFKHYDKALPHL 205

Query: 1207 YYHLNLSQNYYYHQNLSQNYY 1227
               L L+ +    + ++ +  
Sbjct: 206  EAALELAMDIQNDRFIAISLL 226

>3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis} Length = 378

 Score = 45.6 bits (108), Expect = 8e-05
 Identities = 31/258 (12%), Positives = 65/258 (25%), Gaps = 40/258 (15%)

Query: 998  QNQSQNYYYH-----QNLSQNYYYHQNLSLKYYCRRNLSQNYYCHQNQSPN--NYYYHLN 1050
            ++Q    YY        L  +Y               L +     Q +      YY    
Sbjct: 47   EDQDLLIYYSLMCFRHQLMLDYLEPGKTYGNRPTVTELLETIETPQKKLTGLLKYYSLFF 106

Query: 1051 LSQNYYFHQNQSQN--YYYHQ--NLSQNYYYHQNLSLKYYCRRNLSQNYYCHQNQSQNYY 1106
                Y F Q +      YY +              +  ++    ++   Y H  Q+    
Sbjct: 107  -RGMYEFDQKEYVEAIGYYREAEKELPFVSDDIEKAEFHF---KVA-EAYYHMKQTHVSM 161

Query: 1107 YHQNQSQNYYYHQNQSQKYYYHQNLSQNYYYHQNLSQNYYCHQNQSQN--YYYHQ--NQS 1162
            YH  Q+ + Y          Y     Q+ +    ++ NY            +       +
Sbjct: 162  YHILQALDIY-----QNHPLYSIRTIQSLF---VIAGNYD-DFKHYDKALPHLEAALELA 212

Query: 1163 QKYYYHQNLSQ------NCYYHQNRSQN--YYYHQNLSQNYYYHQNQSQKNYYYHLNLSQ 1214
                  + ++       N Y      Q    ++ +    +     +   K  +    LS 
Sbjct: 213  MDIQNDRFIAISLLNIANSYDRSGDDQMAVEHFQKAAKVSREKVPDLLPKVLF---GLSW 269

Query: 1215 NYYYHQNLSQNYYYHQNS 1232
                     + + + +  
Sbjct: 270  TLCKAGQTQKAFQFIEEG 287

>1ybi_A HA33A, HA33/A, non-toxin haemagglutinin HA34; beta-trefoil; 1.50A {Clostridium botulinum} Length = 288

 Score = 49.0 bits (116), Expect = 4e-06
 Identities = 20/205 (9%), Positives = 54/205 (26%), Gaps = 10/205 (4%)

Query: 1038 QNQSPNNYYY-HLNLSQNYYFHQNQS--QNYYYHQNLSQNYYYHQNLSLKYYCRRNLSQN 1094
            QN   +           N +F+Q       +   +N  + +    + +   Y  +++  +
Sbjct: 3    QNSLNDKIVTISCKADTNLFFYQVAGNVSLFQQTRNYLERWRLIYDSNKAAYKIKSMDIH 62

Query: 1095 YYCHQNQSQNYYYHQNQSQNYYYHQNQSQKYYYHQNLSQNYYYHQNLSQNYYCHQNQSQN 1154
                 N    +    +           +Q +   +++  N +   +           +  
Sbjct: 63   NT---NLVLTWNAPTHNISTQQDSNADNQYWLLLKDIGNNSFIIASYKNPNLVLYADTVA 119

Query: 1155 YYYHQNQSQKYYYHQNLSQNCYYHQNRSQNYYYHQNLSQNYYYHQNQSQKN----YYYHL 1210
                 +      Y + + ++       +        L  N    Q          Y +  
Sbjct: 120  RNLKLSTLNNSNYIKFIIEDYIISDLNNFTCKISPILDLNKVVQQVDVTNLNVNLYTWDY 179

Query: 1211 NLSQNYYYHQNLSQNYYYHQNSFTS 1235
              +Q +    N  +  Y   N+  S
Sbjct: 180  GRNQKWTIRYNEEKAAYQFFNTILS 204

>1ybi_A HA33A, HA33/A, non-toxin haemagglutinin HA34; beta-trefoil; 1.50A {Clostridium botulinum} Length = 288

 Score = 47.5 bits (112), Expect = 2e-05
 Identities = 19/218 (8%), Positives = 56/218 (25%), Gaps = 29/218 (13%)

Query: 991  GQNYYFHQNQSQNYYYHQNLSQNYYYHQNLSLK--------YYCRRNLSQNYYCHQNQSP 1042
             + +    + ++  Y  +++   +  +  L+                 +Q +   ++   
Sbjct: 40   LERWRLIYDSNKAAYKIKSMD-IHNTNLVLTWNAPTHNISTQQDSNADNQYWLLLKDIGN 98

Query: 1043 NNYY----YHLNLSQNYYFHQNQSQNYYYHQNLSQNYYYH----QNLSLKYYCRRNLSQN 1094
            N++      + NL           +    + +    +        +L+        +   
Sbjct: 99   NSFIIASYKNPNLVLYADTVARNLKLSTLNNSNYIKFIIEDYIISDLNNFTCKISPILDL 158

Query: 1095 YYCHQNQSQNYYYHQNQSQNYYYHQNQSQKYYYHQNLSQNYYYHQNL-SQNYYCHQNQS- 1152
                Q               Y +   ++QK+    N  +  Y   N    N       S 
Sbjct: 159  NKVVQQVDVT----NLNVNLYTWDYGRNQKWTIRYNEEKAAYQFFNTILSNGVLTWIFSN 214

Query: 1153 ------QNYYYHQNQSQKYYYHQNLSQNCYYHQNRSQN 1184
                   +     N +Q +  +     +  Y     ++
Sbjct: 215  GNTVRVSSSNDQNNDAQYWLINPVSDTDETYTITNLRD 252

>1m6b_A C-ER, receptor protein-tyrosine kinase ERBB-3; cell surface receptor, immunity, signaling transferase; HET: NAG NDG; 2.60A {Homo sapiens} SCOP: c.10.2.5 c.10.2.5 g.3.9.1 g.3.9.1 PDB: 3p11_A* Length = 621

 Score = 50.0 bits (118), Expect = 4e-06
 Identities = 28/279 (10%), Positives = 59/279 (21%), Gaps = 34/279 (12%)

Query: 990  IGQNYYFHQNQSQNYYYHQNLSQNYYYHQNLSLKYYCRRNLS----------QNYY---- 1035
             G      Q  ++     Q     +  + N      C    S          +++     
Sbjct: 176  WGPGSEDCQTLTKTICAPQCNGHCFGPNPNQCCHDECAGGCSGPQDTDCFACRHFNDSGA 235

Query: 1036 CHQNQSPNNYYYHLNLSQ-----------NYYFHQNQSQNYYYHQNL-----SQNYYYHQ 1079
            C     P    Y+    Q                 +   N+   Q         +     
Sbjct: 236  CVPRC-PQPLVYNKLTFQLEPNPHTKYQYGGVCVASCPHNFVVDQTSCVRACPPDKMEVD 294

Query: 1080 NLSLKYYCRRNLSQNYYCHQNQSQNYYYHQNQSQNYYYHQNQSQKYYYHQNL-SQNYYYH 1138
               LK            C    S + +   + S    +             +   N    
Sbjct: 295  KNGLKMCEPCGGLCPKACEGTGSGSRFQTVDSSNIDGFVNCTKILGNLDFLITGLNGDPW 354

Query: 1139 QNLSQNYYCHQNQSQNYYYHQNQSQKYYYHQNLSQNCYYHQNR--SQNYYYHQNLSQNYY 1196
              +        N  +             +  ++     +           Y++  S    
Sbjct: 355  HKIPALDPEKLNVFRTVREITGYLNIQSWPPHMHNFSVFSNLTTIGGRSLYNRGFSLLIM 414

Query: 1197 YHQNQSQKNYYYHLNLSQNYYYHQNLSQNYYYHQNSFTS 1235
             + N +   +     +S    Y     Q  Y+H  ++T 
Sbjct: 415  KNLNVTSLGFRSLKEISAGRIYISANRQLCYHHSLNWTK 453

>1m6b_A C-ER, receptor protein-tyrosine kinase ERBB-3; cell surface receptor, immunity, signaling transferase; HET: NAG NDG; 2.60A {Homo sapiens} SCOP: c.10.2.5 c.10.2.5 g.3.9.1 g.3.9.1 PDB: 3p11_A* Length = 621

 Score = 49.3 bits (116), Expect = 7e-06
 Identities = 20/241 (8%), Positives = 57/241 (23%), Gaps = 9/241 (3%)

Query: 998  QNQSQNYYYHQNL-----SQNYYYHQNLSLKYYCRRNLSQNYYCHQNQSPNNYYYHLNLS 1052
             +   N+   Q         +        LK            C    S + +    + +
Sbjct: 269  ASCPHNFVVDQTSCVRACPPDKMEVDKNGLKMCEPCGGLCPKACEGTGSGSRFQTVDSSN 328

Query: 1053 QNYYFHQNQSQNYYYHQNLSQNYYYHQNLSLKYYCRRNLSQNYYCHQNQSQNYYYHQNQS 1112
             + + +  +            N      +      + N+ +          N        
Sbjct: 329  IDGFVNCTKILGNLDFLITGLNGDPWHKIPALDPEKLNVFRTVRE-ITGYLNIQSWPPHM 387

Query: 1113 QNYYYHQNQSQ---KYYYHQNLSQNYYYHQNLSQNYYCHQNQSQNYYYHQNQSQKYYYHQ 1169
             N+    N +    +  Y++  S     + N++   +    +      + + +++  YH 
Sbjct: 388  HNFSVFSNLTTIGGRSLYNRGFSLLIMKNLNVTSLGFRSLKEISAGRIYISANRQLCYHH 447

Query: 1170 NLSQNCYYHQNRSQNYYYHQNLSQNYYYHQNQSQKNYYYHLNLSQNYYYHQNLSQNYYYH 1229
            +L+          +      N  +     + +                      +NY   
Sbjct: 448  SLNWTKVLRGPTEERLDIKHNRPRRDCVAEGKVCDPLCSSGGCWGPGPGQCLSCRNYSRG 507

Query: 1230 Q 1230
             
Sbjct: 508  G 508

>1m6b_A C-ER, receptor protein-tyrosine kinase ERBB-3; cell surface receptor, immunity, signaling transferase; HET: NAG NDG; 2.60A {Homo sapiens} SCOP: c.10.2.5 c.10.2.5 g.3.9.1 g.3.9.1 PDB: 3p11_A* Length = 621

 Score = 47.4 bits (111), Expect = 3e-05
 Identities = 24/292 (8%), Positives = 58/292 (19%), Gaps = 53/292 (18%)

Query: 990  IGQNYYFHQNQSQNY-YYHQNLSQNYYYHQNLSLKYYCRRNLSQNYYCHQNQSPNNYYYH 1048
            I +N       + ++    ++         N      C        +   ++        
Sbjct: 130  IEKNDKLCHMDTIDWRDIVRDRDAEIVVKDNGRSCPPCHEVCKGRCWGPGSEDCQTLTKT 189

Query: 1049 LNLSQ--NYYFHQNQSQ---------------------NYYYHQNL-----SQNYYYHQN 1080
            +   Q   + F  N +Q                      ++           Q   Y++ 
Sbjct: 190  ICAPQCNGHCFGPNPNQCCHDECAGGCSGPQDTDCFACRHFNDSGACVPRCPQPLVYNKL 249

Query: 1081 LSLKYYCRRNLS----QNYYCHQNQSQNYYYHQNQ-----SQNYYYHQNQSQKYYYHQ-N 1130
                +    N          C  +   N+   Q         +         K       
Sbjct: 250  T---FQLEPNPHTKYQYGGVCVASCPHNFVVDQTSCVRACPPDKMEVDKNGLKMCEPCGG 306

Query: 1131 LSQNYYYHQNLSQNYYCHQNQSQNYYYHQNQSQKYYYHQNLSQNCYYHQNRSQNYYYHQN 1190
            L             +    + + + + +  +            N               N
Sbjct: 307  LCPKACEGTGSGSRFQTVDSSNIDGFVNCTKILGNLDFLITGLNGDPWHKIPALDPEKLN 366

Query: 1191 LSQNYY--------YHQNQSQKNYYYHLNLSQ---NYYYHQNLSQNYYYHQN 1231
            + +                   N+    NL+       Y++  S     + N
Sbjct: 367  VFRTVREITGYLNIQSWPPHMHNFSVFSNLTTIGGRSLYNRGFSLLIMKNLN 418

>1m6b_A C-ER, receptor protein-tyrosine kinase ERBB-3; cell surface receptor, immunity, signaling transferase; HET: NAG NDG; 2.60A {Homo sapiens} SCOP: c.10.2.5 c.10.2.5 g.3.9.1 g.3.9.1 PDB: 3p11_A* Length = 621

 Score = 44.7 bits (104), Expect = 2e-04
 Identities = 26/211 (12%), Positives = 54/211 (25%), Gaps = 32/211 (15%)

Query: 990  IGQNYYFHQNQSQNYYYHQNLSQ------------NYYYHQNLSLKYYCRRNLSQNYYCH 1037
            IG    +++  S     + N++               Y   N  L Y+   N ++     
Sbjct: 399  IGGRSLYNRGFSLLIMKNLNVTSLGFRSLKEISAGRIYISANRQLCYHHSLNWTKVLRGP 458

Query: 1038 QNQSPNNYYYHLNLSQNYYFHQNQSQNYYYHQNLSQNYYYHQNLSLKYYCR---RNLSQN 1094
              +        L++  N       ++        S    +         CR   R     
Sbjct: 459  TEE-------RLDIKHNRPRRDCVAEGKVCDPLCSSGGCWGPGPGQCLSCRNYSRGGVCV 511

Query: 1095 YYCHQNQSQNYYYHQNQSQNYYYHQNQSQKYYYHQNLSQNYYYHQNLSQNYYCHQNQ--- 1151
             +C+    +   +         + + Q  +     N S +          ++        
Sbjct: 512  THCNFLNGEPREFAHEAECFSCHPECQPMEGTATCNGSGS---DTCAQCAHFRDGPHCVS 568

Query: 1152 --SQNYYYHQNQSQKYYYHQNLSQNCYYHQN 1180
                     +    KY   QN  + C  H+N
Sbjct: 569  SCPHGVLGAKGPIYKYPDVQNECRPC--HEN 597

>3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis} Length = 383

 Score = 49.4 bits (118), Expect = 5e-06
 Identities = 29/260 (11%), Positives = 77/260 (29%), Gaps = 22/260 (8%)

Query: 989  EIGQNYYFHQNQSQNYYYHQNLSQNYYYHQNLSLKYYCRRNLSQNYYCHQNQSPNNYYYH 1048
            EI Q     +     + Y+  +   +             R   Q          +     
Sbjct: 37   EIKQELDQMEEDQDLHLYYSLMEFRHNLMLEYLEPLEKMRIEEQPRLSDLLLEIDKKQAR 96

Query: 1049 LNLSQNYYFHQNQSQNYYYHQNLSQ-NYYYHQNLSLKYYCRRNLSQ--------NYYCHQ 1099
            L     YYF+  +       +       ++ +  S   + +  + +          Y + 
Sbjct: 97   LTGLLEYYFNFFRGMYELDQREYLSAIKFFKKAESKLIFVKDRIEKAEFFFKMSESYYYM 156

Query: 1100 NQSQNYYYHQNQSQNYY--YHQNQSQKYYYHQNLSQNYYYHQNLSQ---NYYCHQNQSQN 1154
             Q+     +  Q+   Y  +     +    H   + N+   +       ++    + ++ 
Sbjct: 157  KQTYFSMDYARQAYEIYKEHEAYNIRLLQCHSLFATNFLDLKQYEDAISHFQKAYSMAEA 216

Query: 1155 YYYHQNQSQKYYYHQNLSQNCYYHQNRSQN--YYYHQNLSQNYYYHQNQSQKNYYYHLNL 1212
                Q   +  Y   N+   C   Q++ ++   Y+ + ++     +   S    Y+   +
Sbjct: 217  EKQPQLMGRTLY---NIG-LCKNSQSQYEDAIPYFKRAIAVFEESNILPSLPQAYF--LI 270

Query: 1213 SQNYYYHQNLSQNYYYHQNS 1232
            +Q +Y    + + + YH   
Sbjct: 271  TQIHYKLGKIDKAHEYHSKG 290

>3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis} Length = 383

 Score = 47.9 bits (114), Expect = 2e-05
 Identities = 20/213 (9%), Positives = 58/213 (27%), Gaps = 13/213 (6%)

Query: 1023 KYYCRRNLSQNYYCHQNQSPNNYYYHLNLSQNYYFHQNQSQNYYYHQNLSQNYYYHQNLS 1082
             Y  R ++    Y  +           +   + Y+   + ++    + L           
Sbjct: 21   MYIRRFSIPDAEYLRREIKQELDQMEEDQDLHLYYSLMEFRHNLMLEYLEPLEKMRIEEQ 80

Query: 1083 LKYYCRRNLSQNYYCHQNQSQNYYYHQNQSQNYYYHQNQSQK--YYYHQNLS--QNYYYH 1138
             +                    YY++  +   Y   Q +      ++ +  S        
Sbjct: 81   PRLSDLLLEIDKKQARLTGLLEYYFNFFRG-MYELDQREYLSAIKFFKKAESKLIFVKDR 139

Query: 1139 QNLSQNYYCHQNQSQNYYYHQNQSQK--YYYHQNLSQNCYYHQNRSQNYYYHQNLSQNYY 1196
               ++ ++     S   YY+  Q+     Y  Q       +     +    H   + N+ 
Sbjct: 140  IEKAEFFF---KMS-ESYYYMKQTYFSMDYARQAYEIYKEHEAYNIRLLQCHSLFATNFL 195

Query: 1197 YHQN--QSQKNYYYHLNLSQNYYYHQNLSQNYY 1227
              +    +  ++    ++++     Q + +  Y
Sbjct: 196  DLKQYEDAISHFQKAYSMAEAEKQPQLMGRTLY 228

>3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis} Length = 383

 Score = 42.9 bits (101), Expect = 5e-04
 Identities = 23/273 (8%), Positives = 88/273 (32%), Gaps = 42/273 (15%)

Query: 993  NYYFHQNQSQNYYYHQNLSQ-NYYYHQNLSLKYYCRRNLSQ--------NYYCHQNQSPN 1043
             YYF+  +       +       ++ +  S   + +  + +          Y +  Q+  
Sbjct: 102  EYYFNFFRGMYELDQREYLSAIKFFKKAESKLIFVKDRIEKAEFFFKMSESYYYMKQTYF 161

Query: 1044 NYYYH---LNLSQNYYFHQNQSQNYYYHQNLSQNYYYHQN--LSLKYYCR-RNLSQNYYC 1097
            +  Y      + + +  +  +    +     + N+   +    ++ ++ +  ++++    
Sbjct: 162  SMDYARQAYEIYKEHEAYNIRLLQCHS--LFATNFLDLKQYEDAISHFQKAYSMAEAEKQ 219

Query: 1098 HQNQSQNY------YYHQNQSQN--YYYHQ--NQSQKYYYHQNLSQNYYYHQNLSQNYYC 1147
             Q   +           Q+Q ++   Y+ +     ++     +L Q Y+    ++Q +Y 
Sbjct: 220  PQLMGRTLYNIGLCKNSQSQYEDAIPYFKRAIAVFEESNILPSLPQAYF---LITQIHYK 276

Query: 1148 HQN--QSQNYY------YHQNQSQKYYYHQNLSQNCYYHQNRSQNYYYHQNLSQNYYYHQ 1199
                 ++  Y+        +     Y       ++ Y      +      +  ++   + 
Sbjct: 277  LGKIDKAHEYHSKGMAYSQKAGDVIYLSEFEFLKSLYLSGPDEEAIQGFFDFLESKMLYA 336

Query: 1200 NQSQKNYYYHLNLSQNYYYHQNLSQNYYYHQNS 1232
            +       + +++++ Y+  +N  +   Y    
Sbjct: 337  DLED----FAIDVAKYYHERKNFQKASAYFLKV 365

>3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis} Length = 383

 Score = 42.5 bits (100), Expect = 7e-04
 Identities = 29/313 (9%), Positives = 84/313 (26%), Gaps = 71/313 (22%)

Query: 973  YKDKYTGVGGYFGAVPEIGQNYYFHQNQSQNYYYHQNLSQNYYYHQNLSLKYYCRRNLSQ 1032
            +      +        E          +             YY++    +    +R    
Sbjct: 62   HNLMLEYLEPLEKMRIEEQPRLSDLLLEIDKKQARLTGLLEYYFNFFRGMYELDQREYLS 121

Query: 1033 NYYCHQNQSPNNYYYHLNLSQNYYFHQNQSQNYYYHQNLSQNYYYHQN---LSLKYY--- 1086
                 +           +          +++ ++    +S   YY+      S+ Y    
Sbjct: 122  AIKFFKK--------AESKLIFVKDRIEKAEFFF---KMS-ESYYYMKQTYFSMDYARQA 169

Query: 1087 ----------------CRRNLSQNYYCHQN--QSQNYY-----------YHQNQSQNY-- 1115
                            C    + N+   +    + +++             Q   +    
Sbjct: 170  YEIYKEHEAYNIRLLQCHSLFATNFLDLKQYEDAISHFQKAYSMAEAEKQPQLMGRTLYN 229

Query: 1116 ----YYHQNQSQK--YYYHQNLS--QNYYYHQNLSQNYYCHQNQSQNYYYHQNQSQK--Y 1165
                   Q+Q +    Y+ + ++  +      +L Q Y+     +   +Y   +  K   
Sbjct: 230  IGLCKNSQSQYEDAIPYFKRAIAVFEESNILPSLPQAYF---LIT-QIHYKLGKIDKAHE 285

Query: 1166 YYHQNLSQNCYYHQNRSQNYYYHQNLSQNYYYHQNQSQ--KNYYYHLNLSQNYYYHQNLS 1223
            Y+ + ++   Y  +     Y       ++ Y      +  + ++  L     Y   ++ +
Sbjct: 286  YHSKGMA---YSQKAGDVIYLSEFEFLKSLYLSGPDEEAIQGFFDFLESKMLYADLEDFA 342

Query: 1224 QN---YYYHQNSF 1233
             +   YY+ + +F
Sbjct: 343  IDVAKYYHERKNF 355

>1igr_A Insulin-like growth factor receptor 1; hormone receptor, insulin receptor family; HET: NAG FUC BMA MAN; 2.60A {Homo sapiens} SCOP: c.10.2.5 c.10.2.5 g.3.9.1 Length = 478

 Score = 49.4 bits (117), Expect = 5e-06
 Identities = 23/231 (9%), Positives = 49/231 (21%), Gaps = 28/231 (12%)

Query: 1008 QNLSQNYYYHQNLSLKYYCRRNLSQNYYCHQNQSPNNYYYHLNLSQNYYFHQNQSQNYYY 1067
              +S NY             +           + P      +N   NY            
Sbjct: 132  DAVSNNYIVGNK------PPKECGDLCPGTMEEKPMCEKTTINNEYNYRCWTTNRCQKMC 185

Query: 1068 HQNLSQNYYYHQNLSLKYYCRRNLSQNYYCHQNQSQNYYYHQNQ-----SQNYYYHQNQS 1122
                 +      N      C  + S         +  +YY+          N Y  +   
Sbjct: 186  PSTCGKRACTENNECCHPECLGSCSAPDNDTACVACRHYYYAGVCVPACPPNTYRFEGWR 245

Query: 1123 QKYYY--------HQNLSQNYYYHQNLSQNYYCHQNQSQNYYYHQNQSQKYYYHQNLSQN 1174
                           + S+ +  H        C Q     +  + +QS      +     
Sbjct: 246  CVDRDFCANILSAESSDSEGFVIHDG-----ECMQECPSGFIRNGSQSMYCIPCEGPCPK 300

Query: 1175 CYYHQNRSQNYYYHQNLSQNYYYHQNQSQKNYYYHLNLSQNYYYHQNLSQN 1225
                + +++          +    Q  +       +N+ +       L   
Sbjct: 301  VCEEEKKTKTIDS----VTSAQMLQGCTIFKGNLLINIRRGNNIASELENF 347

>1igr_A Insulin-like growth factor receptor 1; hormone receptor, insulin receptor family; HET: NAG FUC BMA MAN; 2.60A {Homo sapiens} SCOP: c.10.2.5 c.10.2.5 g.3.9.1 Length = 478

 Score = 47.9 bits (113), Expect = 1e-05
 Identities = 22/235 (9%), Positives = 49/235 (20%), Gaps = 31/235 (13%)

Query: 1010 LSQNYYYHQNLSLKYYCRRNLSQNYYCHQNQSPNNYYYHLNLSQNYYFHQNQSQNYYYHQ 1069
                    +N  L Y    + S           NNY       +        +       
Sbjct: 107  TRGAIRIEKNADLCYLSTVDWSLILDA----VSNNYIVGNKPPKECGDLCPGT--MEEKP 160

Query: 1070 NLSQNYYYHQNLSLKYYCRRNLSQNYYCHQNQSQNYYYHQNQSQNY------YYHQNQSQ 1123
               +    ++     Y C         C     +      N+  +           N + 
Sbjct: 161  MCEKTTINNEY---NYRCWTTNRCQKMCPSTCGKRACTENNECCHPECLGSCSAPDNDTA 217

Query: 1124 ----KYYYHQNL-----SQNYYYHQNLSQNYYCHQNQSQNYYYHQNQSQKYYYHQNLSQN 1174
                ++YY+  +       N Y  +   +        +       +      +     Q 
Sbjct: 218  CVACRHYYYAGVCVPACPPNTYRFEG-WRCVDRDFCANILSAESSDSEGFVIHDGECMQE 276

Query: 1175 C---YYH---QNRSQNYYYHQNLSQNYYYHQNQSQKNYYYHLNLSQNYYYHQNLS 1223
            C   +     Q+                  + ++  +      L     +  NL 
Sbjct: 277  CPSGFIRNGSQSMYCIPCEGPCPKVCEEEKKTKTIDSVTSAQMLQGCTIFKGNLL 331

>2wvr_C DNA replication factor CDT1; DNA replication license, DNA replication inhibitor, phosphoprotein, UBL conjugation, DNA-binding, polymorphism; HET: DNA; 3.30A {Homo sapiens} PDB: 2klo_A* Length = 546

 Score = 49.3 bits (116), Expect = 7e-06
 Identities = 21/156 (13%), Positives = 34/156 (21%)

Query: 491 PKPEPELLLPPKPEPELLLPPKLEPKLLLPPKSEPELLLPPKPEPELLLPPKPKPELLLP 550
            +P P  + PPK       P +   +      S       P   P       P    L  
Sbjct: 13  RRPGPPRIAPPKLACRTPSPARPALRAPASATSGSRKRARPPAAPGRDQARPPARRRLRL 72

Query: 551 PKPEPEKLLLPPKPKPKLLLPPKPESELLLPPKPEPELIIPPKPEPEILIPPKPEPELLL 610
              E      P  P       P  + +   P   +P  +   + +  I            
Sbjct: 73  SVDEVSSPSTPEAPDIPACPSPGQKIKKSTPAAGQPPHLTSAQDQDTISELASCLQRARE 132

Query: 611 PPKPEPEILLPPKPEPELLLPPKPEPEILLPPKPEP 646
                  +    +   E   P           +  P
Sbjct: 133 LGARVRALKASAQDAGESCTPEAEGRPEEPCGEKAP 168

>2wvr_C DNA replication factor CDT1; DNA replication license, DNA replication inhibitor, phosphoprotein, UBL conjugation, DNA-binding, polymorphism; HET: DNA; 3.30A {Homo sapiens} PDB: 2klo_A* Length = 546

 Score = 48.6 bits (114), Expect = 1e-05
 Identities = 21/156 (13%), Positives = 34/156 (21%)

Query: 481 PKPEPEILLPPKPEPELLLPPKPEPELLLPPKLEPKLLLPPKSEPELLLPPKPEPELLLP 540
            +P P  + PPK       P +P            +    P + P       P    L  
Sbjct: 13  RRPGPPRIAPPKLACRTPSPARPALRAPASATSGSRKRARPPAAPGRDQARPPARRRLRL 72

Query: 541 PKPKPELLLPPKPEPEKLLLPPKPKPKLLLPPKPESELLLPPKPEPELIIPPKPEPEILI 600
              +      P+         P  K K   P   +   L   + +  +            
Sbjct: 73  SVDEVSSPSTPEAPDIPACPSPGQKIKKSTPAAGQPPHLTSAQDQDTISELASCLQRARE 132

Query: 601 PPKPEPELLLPPKPEPEILLPPKPEPELLLPPKPEP 636
                  L    +   E   P           +  P
Sbjct: 133 LGARVRALKASAQDAGESCTPEAEGRPEEPCGEKAP 168

>2wvr_C DNA replication factor CDT1; DNA replication license, DNA replication inhibitor, phosphoprotein, UBL conjugation, DNA-binding, polymorphism; HET: DNA; 3.30A {Homo sapiens} PDB: 2klo_A* Length = 546

 Score = 47.4 bits (111), Expect = 2e-05
 Identities = 23/156 (14%), Positives = 35/156 (22%)

Query: 531 PKPEPELLLPPKPKPELLLPPKPEPEKLLLPPKPKPKLLLPPKPESELLLPPKPEPELII 590
            +P P  + PPK       P +P             K   PP         P     L +
Sbjct: 13  RRPGPPRIAPPKLACRTPSPARPALRAPASATSGSRKRARPPAAPGRDQARPPARRRLRL 72

Query: 591 PPKPEPEILIPPKPEPELLLPPKPEPEILLPPKPEPELLLPPKPEPEILLPPKPEPELLL 650
                     P  P+      P  + +   P   +P  L   + +  I            
Sbjct: 73  SVDEVSSPSTPEAPDIPACPSPGQKIKKSTPAAGQPPHLTSAQDQDTISELASCLQRARE 132

Query: 651 PPKPESELLLPLKPEPEILLPPKPEPELLLPPKPEP 686
                  L    +   E   P           +  P
Sbjct: 133 LGARVRALKASAQDAGESCTPEAEGRPEEPCGEKAP 168

>2wvr_C DNA replication factor CDT1; DNA replication license, DNA replication inhibitor, phosphoprotein, UBL conjugation, DNA-binding, polymorphism; HET: DNA; 3.30A {Homo sapiens} PDB: 2klo_A* Length = 546

 Score = 45.9 bits (107), Expect = 8e-05
 Identities = 22/156 (14%), Positives = 37/156 (23%)

Query: 511 PKLEPKLLLPPKSEPELLLPPKPEPELLLPPKPKPELLLPPKPEPEKLLLPPKPKPKLLL 570
            +  P  + PPK       P +P                 P   P +    P  + +L L
Sbjct: 13  RRPGPPRIAPPKLACRTPSPARPALRAPASATSGSRKRARPPAAPGRDQARPPARRRLRL 72

Query: 571 PPKPESELLLPPKPEPELIIPPKPEPEILIPPKPEPELLLPPKPEPEILLPPKPEPELLL 630
                S    P  P+      P  + +   P   +P  L   + +  I            
Sbjct: 73  SVDEVSSPSTPEAPDIPACPSPGQKIKKSTPAAGQPPHLTSAQDQDTISELASCLQRARE 132

Query: 631 PPKPEPEILLPPKPEPELLLPPKPESELLLPLKPEP 666
                  +    +   E   P           +  P
Sbjct: 133 LGARVRALKASAQDAGESCTPEAEGRPEEPCGEKAP 168

>2wvr_C DNA replication factor CDT1; DNA replication license, DNA replication inhibitor, phosphoprotein, UBL conjugation, DNA-binding, polymorphism; HET: DNA; 3.30A {Homo sapiens} PDB: 2klo_A* Length = 546

 Score = 44.7 bits (104), Expect = 2e-04
 Identities = 18/147 (12%), Positives = 28/147 (19%)

Query: 480 PPKPEPEILLPPKPEPELLLPPKPEPELLLPPKLEPKLLLPPKSEPELLLPPKPEPELLL 539
           PPK       P +P                 P   P            L     E     
Sbjct: 22  PPKLACRTPSPARPALRAPASATSGSRKRARPPAAPGRDQARPPARRRLRLSVDEVSSPS 81

Query: 540 PPKPKPELLLPPKPEPEKLLLPPKPKPKLLLPPKPESELLLPPKPEPELIIPPKPEPEIL 599
            P+       P   +  K   P   +P  L   + +  +                   + 
Sbjct: 82  TPEAPDIPACPSPGQKIKKSTPAAGQPPHLTSAQDQDTISELASCLQRARELGARVRALK 141

Query: 600 IPPKPEPELLLPPKPEPEILLPPKPEP 626
              +   E   P           +  P
Sbjct: 142 ASAQDAGESCTPEAEGRPEEPCGEKAP 168

>3rfz_B Outer membrane usher protein, type 1 fimbrial SYN; beta-barrel, pilus assembly, outer-membrane, cell adhesion-T protein-chaperone complex; 2.80A {Escherichia coli} PDB: 3ohn_A 1zdv_A Length = 843

 Score = 49.2 bits (117), Expect = 9e-06
 Identities = 27/195 (13%), Positives = 65/195 (33%), Gaps = 33/195 (16%)

Query: 1058 HQNQSQNYYYHQNLSQNYYYHQNLSLKYYCR--RNLSQNYYCHQN----QSQNYYYHQNQ 1111
            H  QS  + Y+++L+++    Q +  +Y      N +   Y   N    ++Q+       
Sbjct: 409  HDGQSVRFLYNKSLNESGTNIQLVGYRYSTSGYFNFADTTYSRMNGYNIETQDGVIQVKP 468

Query: 1112 SQNYYYHQNQSQKYYYHQNLSQNYYYHQNLSQNYYCHQNQSQNYYYHQNQSQKYYYHQNL 1171
                YY+   +++      ++Q       L  +       S   Y+  +   + +     
Sbjct: 469  KFTDYYNLAYNKRGKLQLTVTQQLGRTSTLYLSG------SHQTYWGTSNVDEQF----- 517

Query: 1172 SQNCYYHQNRSQNYYYHQNLSQNYYYHQNQSQKNYYYHLNLS-----------QNYYYHQ 1220
             Q          N+     LS +   +  Q  ++    LN++           ++ + H 
Sbjct: 518  -QAGLNTAFEDINW----TLSYSLTKNAWQKGRDQMLALNVNIPFSHWLRSDSKSQWRHA 572

Query: 1221 NLSQNYYYHQNSFTS 1235
            + S +  +  N   +
Sbjct: 573  SASYSMSHDLNGRMT 587

>3rfz_B Outer membrane usher protein, type 1 fimbrial SYN; beta-barrel, pilus assembly, outer-membrane, cell adhesion-T protein-chaperone complex; 2.80A {Escherichia coli} PDB: 3ohn_A 1zdv_A Length = 843

 Score = 47.2 bits (112), Expect = 3e-05
 Identities = 31/258 (12%), Positives = 69/258 (26%), Gaps = 43/258 (16%)

Query: 997  HQNQSQNYYYHQNLSQNYYYHQNLSLKYYCRRNLSQNYYCHQNQSPNNYYYHLNLSQNYY 1056
            H  QS  + Y+++L++      N+ L  Y  R  +  Y+   + + +    +   +Q+  
Sbjct: 409  HDGQSVRFLYNKSLNE---SGTNIQLVGY--RYSTSGYFNFADTTYSRMNGYNIETQDGV 463

Query: 1057 FHQNQSQNYYYHQNLSQNYYYHQNLSLKYYCRRNLSQNYYCHQNQSQNYYYHQNQSQNYY 1116
                     YY      N  Y++   L+      ++Q          +       S   Y
Sbjct: 464  IQVKPKFTDYY------NLAYNKRGKLQL----TVTQQLGRTSTLYLSG------SHQTY 507

Query: 1117 YHQNQSQKYY--YHQNLSQNYYYHQNLSQNYYCHQNQSQNYYYHQ------NQSQKYYYH 1168
            +  +   + +        ++  +  + S      Q                +  +     
Sbjct: 508  WGTSNVDEQFQAGLNTAFEDINWTLSYSLTKNAWQKGRDQMLALNVNIPFSHWLRSDSKS 567

Query: 1169 QNLSQNCYYHQNRSQNYYYHQNLS--------QNYYY-----HQNQSQKNYYYHLNLSQN 1215
            Q    +  Y  +   N                 N  Y     +      N       + N
Sbjct: 568  QWRHASASYSMSHDLNGRMTNLAGVYGTLLEDNNLSYSVQTGYAGGGDGNSGSTGYATLN 627

Query: 1216 YYYHQ-NLSQNYYYHQNS 1232
            Y     N +  Y +  + 
Sbjct: 628  YRGGYGNANIGYSHSDDI 645

>3v1v_A 2-MIB synthase, 2-methylisoborneol synthase; class I terpenoid cyclase fold, DDXXXXD motif, NDXXSXXXE MOT methylisoborneol biosynthesis; HET: GST; 1.80A {Streptomyces coelicolor} PDB: 3v1x_A* Length = 433

 Score = 47.8 bits (113), Expect = 2e-05
 Identities = 22/115 (19%), Positives = 27/115 (23%), Gaps = 3/115 (2%)

Query: 581 PPKPEPELIIPPKPEPEILIPPKPEPELLLPPKPEPEILLPPKPEPELLLPPKPEPEILL 640
                P       P   +          L PP   P    P  P P       P   +  
Sbjct: 11  SSGLVPRGSHMVIPSASVTSAASDFLAALHPPVTVP---DPAPPPPPAPAAGNPPDTVTG 67

Query: 641 PPKPEPELLLPPKPESELLLPLKPEPEILLPPKPEPELLLPPKPEPELLLPPKPE 695
               +  L  P  P +  L P         P  P        +  P L   P PE
Sbjct: 68  DSVLQRILRGPTGPGTTSLAPAVRYGRQPGPEAPASAPPAAGRAVPGLYHHPVPE 122

>3v1v_A 2-MIB synthase, 2-methylisoborneol synthase; class I terpenoid cyclase fold, DDXXXXD motif, NDXXSXXXE MOT methylisoborneol biosynthesis; HET: GST; 1.80A {Streptomyces coelicolor} PDB: 3v1x_A* Length = 433

 Score = 46.7 bits (110), Expect = 4e-05
 Identities = 23/125 (18%), Positives = 30/125 (24%), Gaps = 8/125 (6%)

Query: 563 KPKPKLLLPPKPESELLLPPKPEPELIIPPKPEPEILIPPKPEPELLLPPKPEPEILLPP 622
                 L+P            P   +          L PP   P    P  P P      
Sbjct: 8   HHHSSGLVPRGSH-----MVIPSASVTSAASDFLAALHPPVTVP---DPAPPPPPAPAAG 59

Query: 623 KPEPELLLPPKPEPEILLPPKPEPELLLPPKPESELLLPLKPEPEILLPPKPEPELLLPP 682
            P   +      +  +  P  P    L P         P  P        +  P L   P
Sbjct: 60  NPPDTVTGDSVLQRILRGPTGPGTTSLAPAVRYGRQPGPEAPASAPPAAGRAVPGLYHHP 119

Query: 683 KPEPE 687
            PEP+
Sbjct: 120 VPEPD 124

>3v1v_A 2-MIB synthase, 2-methylisoborneol synthase; class I terpenoid cyclase fold, DDXXXXD motif, NDXXSXXXE MOT methylisoborneol biosynthesis; HET: GST; 1.80A {Streptomyces coelicolor} PDB: 3v1x_A* Length = 433

 Score = 45.1 bits (106), Expect = 1e-04
 Identities = 18/126 (14%), Positives = 26/126 (20%), Gaps = 4/126 (3%)

Query: 542 KPKPELLLPPKPEPEKLLLPPKPKPKLLLPPKPESELLLPPKPEPELIIPPKPEPEILIP 601
                 L+P           P             +       P+P    PP P       
Sbjct: 8   HHHSSGLVPRGSHMV----IPSASVTSAASDFLAALHPPVTVPDPAPPPPPAPAAGNPPD 63

Query: 602 PKPEPELLLPPKPEPEILLPPKPEPELLLPPKPEPEILLPPKPEPELLLPPKPESELLLP 661
                 +L      P         P +    +P PE      P     +P      +  P
Sbjct: 64  TVTGDSVLQRILRGPTGPGTTSLAPAVRYGRQPGPEAPASAPPAAGRAVPGLYHHPVPEP 123

Query: 662 LKPEPE 667
                E
Sbjct: 124 DPVRVE 129

>3v1v_A 2-MIB synthase, 2-methylisoborneol synthase; class I terpenoid cyclase fold, DDXXXXD motif, NDXXSXXXE MOT methylisoborneol biosynthesis; HET: GST; 1.80A {Streptomyces coelicolor} PDB: 3v1x_A* Length = 433

 Score = 44.4 bits (104), Expect = 2e-04
 Identities = 20/125 (16%), Positives = 28/125 (22%), Gaps = 11/125 (8%)

Query: 530 PPKPEPELLLPPKPKPELLLPPKPEPEKLLLPPKPKPKLLLPPKPESELLLPPKPEPELI 589
              P    ++ P            +    L PP   P    P  P      PP P     
Sbjct: 13  GLVPRGSHMVIPSASVT---SAASDFLAALHPPVTVP---DPAPPP-----PPAPAAGNP 61

Query: 590 IPPKPEPEILIPPKPEPELLLPPKPEPEILLPPKPEPELLLPPKPEPEILLPPKPEPELL 649
                   +L      P         P +    +P PE      P     +P      + 
Sbjct: 62  PDTVTGDSVLQRILRGPTGPGTTSLAPAVRYGRQPGPEAPASAPPAAGRAVPGLYHHPVP 121

Query: 650 LPPKP 654
            P   
Sbjct: 122 EPDPV 126

>3v1v_A 2-MIB synthase, 2-methylisoborneol synthase; class I terpenoid cyclase fold, DDXXXXD motif, NDXXSXXXE MOT methylisoborneol biosynthesis; HET: GST; 1.80A {Streptomyces coelicolor} PDB: 3v1x_A* Length = 433

 Score = 44.4 bits (104), Expect = 2e-04
 Identities = 18/128 (14%), Positives = 26/128 (20%), Gaps = 3/128 (2%)

Query: 550 PPKPEPEKLLLPPKPKPKLLLPPKPESELLLPPKPEPELIIPPKPEPEILIPPKPEPELL 609
                    L+P          P                     P+P    PP P     
Sbjct: 5   HHHHHHSSGLVPRGSHMV---IPSASVTSAASDFLAALHPPVTVPDPAPPPPPAPAAGNP 61

Query: 610 LPPKPEPEILLPPKPEPELLLPPKPEPEILLPPKPEPELLLPPKPESELLLPLKPEPEIL 669
                   +L      P         P +    +P PE      P +   +P      + 
Sbjct: 62  PDTVTGDSVLQRILRGPTGPGTTSLAPAVRYGRQPGPEAPASAPPAAGRAVPGLYHHPVP 121

Query: 670 LPPKPEPE 677
            P     E
Sbjct: 122 EPDPVRVE 129

>2g7c_A Toxin A; linear B trisaccharide, protein-carbohydrate complex, bacter toxin; HET: GLA GAL NAG; 2.00A {Clostridium difficile} Length = 255

 Score = 46.3 bits (110), Expect = 2e-05
 Identities = 25/227 (11%), Positives = 59/227 (25%), Gaps = 71/227 (31%)

Query: 1057 FHQNQSQNYYYHQNLSQ-----------NYYYHQNLSLKYYCRRNLSQNYYCHQNQSQNY 1105
                  + YY++ N ++            YY++ N         +++   Y      +++
Sbjct: 7    MRTIDGKKYYFNTNTAEAATGWQTIDGKKYYFNTN--------TSIASTGY-TIINDKHF 57

Query: 1106 YYHQN----------QSQNYYYHQNQSQKYYYHQNLSQNYYYHQNLSQNYYC-------- 1147
            Y++ +               Y+    +          +       L  N Y         
Sbjct: 58   YFNTDGIMQIGVFKGPDGFEYFAPANTDANNIEGQAIRYQNRFLYLHDNIYYFGNNSKAA 117

Query: 1148 ---HQNQSQNYYYHQNQSQ----------KYYYHQNLSQNCYYHQNRSQNYYY------H 1188
                    + YY+  N +           K +Y +N        +  +   Y+       
Sbjct: 118  TGWVTIDGRRYYFEPNTAIGANGYKIIDNKNFYFRNGLPQIGVFKGPNGFEYFAPANTDA 177

Query: 1189 QNLSQNYYYHQNQSQK--NYYYHLNLS------------QNYYYHQN 1221
             N+      +QN+        Y+   +              YY+  +
Sbjct: 178  NNIDGQAIRYQNRFLHLLGNIYYFGNNSKAVTGWQTINGNMYYFMPD 224

>2g7c_A Toxin A; linear B trisaccharide, protein-carbohydrate complex, bacter toxin; HET: GLA GAL NAG; 2.00A {Clostridium difficile} Length = 255

 Score = 45.9 bits (109), Expect = 4e-05
 Identities = 32/254 (12%), Positives = 61/254 (24%), Gaps = 54/254 (21%)

Query: 991  GQNYYFHQNQSQNYYYHQNLSQNYYYHQNLSLKYYCRRNLSQNYYCHQNQSPNNYYYHLN 1050
            G+ YYF+ N ++     Q +    YY            N + +         N+ +++ N
Sbjct: 12   GKKYYFNTNTAEAATGWQTIDGKKYY-----------FNTNTSIASTGYTIINDKHFYFN 60

Query: 1051 LSQNYYFHQNQSQ----NYYYHQNLSQNYYYHQNLSLKYYCRRNLSQNYYC--------- 1097
               +        +      Y+    +                  L  N Y          
Sbjct: 61   --TDGIMQIGVFKGPDGFEYFAPANTDANNIEGQAIRYQNRFLYLHDNIYYFGNNSKAAT 118

Query: 1098 --HQNQSQNYYYHQN-----------QSQNYYYHQNQSQKYYYHQNLSQNYYYHQNLSQN 1144
                   + YY+  N            ++N+Y+     Q   +       Y+   N   N
Sbjct: 119  GWVTIDGRRYYFEPNTAIGANGYKIIDNKNFYFRNGLPQIGVFKGPNGFEYFAPANTDAN 178

Query: 1145 YYCHQNQSQNYYYHQNQSQKYYYHQN-------LSQNCYYHQNRSQNYYYHQNLSQNYYY 1197
                Q       +       YY+  N        + N          YY+  + +     
Sbjct: 179  NIDGQAIRYQNRFLHLLGNIYYFGNNSKAVTGWQTIN-------GNMYYFMPD-TAMAAA 230

Query: 1198 HQNQSQKNYYYHLN 1211
                      Y   
Sbjct: 231  GGLFEIDGVIYFFG 244

>2g7c_A Toxin A; linear B trisaccharide, protein-carbohydrate complex, bacter toxin; HET: GLA GAL NAG; 2.00A {Clostridium difficile} Length = 255

 Score = 45.5 bits (108), Expect = 4e-05
 Identities = 20/167 (11%), Positives = 46/167 (27%), Gaps = 33/167 (19%)

Query: 1098 HQNQSQNYYYHQNQSQNYY-YHQNQSQKYYYHQN--LSQNYYYHQNLSQNYYCHQN---- 1150
                 + YY++ N ++    +     +KYY++ N  ++   Y   N  +++Y + +    
Sbjct: 8    RTIDGKKYYFNTNTAEAATGWQTIDGKKYYFNTNTSIASTGYTIIN-DKHFYFNTDGIMQ 66

Query: 1151 ------QSQNYYYHQNQSQKYYYHQNLSQNCYYHQNRSQNYYYHQNL-----------SQ 1193
                       Y+    +          +          N YY  N             +
Sbjct: 67   IGVFKGPDGFEYFAPANTDANNIEGQAIRYQNRFLYLHDNIYYFGNNSKAATGWVTIDGR 126

Query: 1194 NYYYHQN--------QSQKNYYYHLNLSQNYYYHQNLSQNYYYHQNS 1232
             YY+  N        +   N  ++                + Y   +
Sbjct: 127  RYYFEPNTAIGANGYKIIDNKNFYFRNGLPQIGVFKGPNGFEYFAPA 173

>3i2t_A Epidermal growth factor receptor, isoform A; EGFR, ectodomain, unliganded, autoinhibited, ATP nucleotide-binding, tyrosine-protein kinase; HET: NDG NAG BMA; 2.70A {Drosophila melanogaster} PDB: 3ltf_A* 3ltg_A Length = 551

 Score = 46.9 bits (110), Expect = 3e-05
 Identities = 25/233 (10%), Positives = 53/233 (22%), Gaps = 30/233 (12%)

Query: 1026 CRRNLSQNYYCHQNQSPNNYYYHLNLSQNYYFHQNQSQNYYYHQNL------SQNYYYHQ 1079
               N +  YY +   +P       + S  +       +N      L      +    Y  
Sbjct: 145  IVSNGTDAYYNYDFTAPERECPKCHESCTHGCWGEGPKNCQKFSKLTCSPQCAGGRCYGP 204

Query: 1080 NLSLK--YYCR--------------RNLSQNYYCHQNQSQNYYYHQNQSQNYYYHQNQSQ 1123
                    +C               +N      C +       Y+           N   
Sbjct: 205  KPRECCHLFCAGGCTGPTQKDCIACKNFFDEGVCKEECPPMRKYNPTTYV---LETNPEG 261

Query: 1124 KYYYHQNLSQNYYYHQNLSQNYYCHQNQSQNYYYHQNQSQKYYYHQNLSQNCY-YHQNRS 1182
            KY Y     +    H  L  N  C ++  Q+      +          +          +
Sbjct: 262  KYAYGATCVKECPGHL-LRDNGACVRSCPQDKMDKGGECVPCNGPCPKTCPGVTVLHAGN 320

Query: 1183 QNYYYHQNLSQNYYYHQNQSQKNYYYHLNLSQNYYYHQNLSQNYYYHQNSFTS 1235
             + + +  +        +Q+   +     +  NY                F++
Sbjct: 321  IDSFRNCTVIDGNIRILDQTFSGFQD---VYANYTMGPRYIPLDPERLEVFST 370

>3i2t_A Epidermal growth factor receptor, isoform A; EGFR, ectodomain, unliganded, autoinhibited, ATP nucleotide-binding, tyrosine-protein kinase; HET: NDG NAG BMA; 2.70A {Drosophila melanogaster} PDB: 3ltf_A* 3ltg_A Length = 551

 Score = 43.8 bits (102), Expect = 3e-04
 Identities = 25/254 (9%), Positives = 55/254 (21%), Gaps = 37/254 (14%)

Query: 994  YYFHQNQ-----SQNYYYHQNLSQNYYYHQNLSLKYYCRRNLSQNYYCHQNQSPNNYYYH 1048
             +F +            Y+           N   KY           C +    +    +
Sbjct: 231  NFFDEGVCKEECPPMRKYNPTTYV---LETNPEGKYAYGAT------CVKECPGHLLRDN 281

Query: 1049 ----LNLSQNYYFH---QNQSQNYYYHQNLSQNYYYHQNLSLKYYCRRNLSQNYYCHQNQ 1101
                 +  Q+                         +  N+     C           Q  
Sbjct: 282  GACVRSCPQDKMDKGGECVPCNGPCPKTCPGVTVLHAGNIDSFRNCTVIDGNIRILDQTF 341

Query: 1102 SQNYYYHQNQSQNYYYHQNQSQKYYYHQNLSQNYYY------HQNLSQNYYCHQNQSQNY 1155
            S     + N +    Y     ++      + +   Y      H     N    +N  +  
Sbjct: 342  SGFQDVYANYTMGPRYIPLDPERLEVFSTVKEITGYLNIEGTHPQFR-NLSYFRN-LETI 399

Query: 1156 YYHQNQSQKYYYHQNLSQNCYYHQNRSQ------NYYYHQNLSQNYYYHQN--QSQKNYY 1207
            +  Q     +     +  + Y  + R+       +     N    Y  +      QK   
Sbjct: 400  HGRQLMESMFAALAIVKSSLYSLEMRNLKQISSGSVVIQHNRDLCYVSNIRWPAIQKEPE 459

Query: 1208 YHLNLSQNYYYHQN 1221
              + +++N      
Sbjct: 460  QKVWVNENLRADLC 473

>1yy9_A Epidermal growth factor receptor; cell surface receptor, tyrosine kinase, glycoprotein, antigen:antibody complex, FAB fragment, antitumor, drug; HET: NDG NAG BMA MAN; 2.60A {Homo sapiens} SCOP: c.10.2.5 c.10.2.5 g.3.9.1 g.3.9.1 PDB: 3qwq_A* 1nql_A* 3b2v_A* 1ivo_A* 3njp_A* Length = 624

 Score = 46.9 bits (110), Expect = 4e-05
 Identities = 20/252 (7%), Positives = 45/252 (17%), Gaps = 13/252 (5%)

Query: 993  NYYFHQNQ-----SQNYYYHQNLSQ-----NYYYHQNLSLKYYCRRNLSQNYYCHQNQSP 1042
              +  +            Y+    Q        Y    +    C RN     +    ++ 
Sbjct: 228  RKFRDEATCKDTCPPLMLYNPTTYQMDVNPEGKYSFGATCVKKCPRNYVVTDHGSCVRAC 287

Query: 1043 NNYYYHLNLSQNYYFHQNQSQNYYYHQNLSQNYYYHQNLSLKYYCRRNLSQNYYCHQNQS 1102
                Y +         + +         +    +           +   +          
Sbjct: 288  GADSYEMEEDGVRKCKKCEGPCRKVCNGIGIGEFKDSLSINATNIKHFKNCTSISGDLHI 347

Query: 1103 QNYYYHQNQSQNYYYHQNQSQKYYYHQNLSQNYYYHQNLSQNYYCHQNQSQNYYYHQNQS 1162
                +  +   +      Q             +   Q   +N                  
Sbjct: 348  LPVAFRGDSFTHTPPLDPQELDILKTVKEITGFLLIQAWPENRTDLHAFENLEIIRGRTK 407

Query: 1163 QKYYYHQ-NLSQNCYYHQNRSQNYYYHQNL--SQNYYYHQNQSQKNYYYHLNLSQNYYYH 1219
            Q   +    +S N      RS       ++  S N       +           Q     
Sbjct: 408  QHGQFSLAVVSLNITSLGLRSLKEISDGDVIISGNKNLCYANTINWKKLFGTSGQKTKII 467

Query: 1220 QNLSQNYYYHQN 1231
             N  +N      
Sbjct: 468  SNRGENKCKATG 479

>1yy9_A Epidermal growth factor receptor; cell surface receptor, tyrosine kinase, glycoprotein, antigen:antibody complex, FAB fragment, antitumor, drug; HET: NDG NAG BMA MAN; 2.60A {Homo sapiens} SCOP: c.10.2.5 c.10.2.5 g.3.9.1 g.3.9.1 PDB: 3qwq_A* 1nql_A* 3b2v_A* 1ivo_A* 3njp_A* Length = 624

 Score = 43.9 bits (102), Expect = 3e-04
 Identities = 15/222 (6%), Positives = 44/222 (19%), Gaps = 5/222 (2%)

Query: 1013 NYYYHQNLSLKYYCRRNLSQNYYCHQNQSPNNYYYHLNLSQNYYFHQNQSQNYYYHQNLS 1072
               Y         C++                +   L+++     H     +     ++ 
Sbjct: 289  ADSYEMEEDGVRKCKKCEGPCRKVCNGIGIGEFKDSLSINATNIKHFKNCTSISGDLHIL 348

Query: 1073 QNYYYHQNLSLKYYCRRNLSQNYYCHQNQSQNYYYHQNQSQNYY-YHQNQSQKYYYHQNL 1131
               +   + +           +      +   +   Q   +N    H  ++ +    +  
Sbjct: 349  PVAFRGDSFT-HTPPLDPQELDILKTVKEITGFLLIQAWPENRTDLHAFENLEIIRGRTK 407

Query: 1132 SQNYYYHQNLSQNYYCHQNQSQNYYYHQNQSQKYYYHQNLSQNC---YYHQNRSQNYYYH 1188
                +    +S N      +S       +       +   +             Q     
Sbjct: 408  QHGQFSLAVVSLNITSLGLRSLKEISDGDVIISGNKNLCYANTINWKKLFGTSGQKTKII 467

Query: 1189 QNLSQNYYYHQNQSQKNYYYHLNLSQNYYYHQNLSQNYYYHQ 1230
             N  +N      Q                      +N    +
Sbjct: 468  SNRGENKCKATGQVCHALCSPEGCWGPEPRDCVSCRNVSRGR 509

>1n8y_C Protooncoprotein; tyrosin kinase receptor, cell surface receptor, transferase; HET: NAG; 2.40A {Rattus norvegicus} SCOP: c.10.2.5 c.10.2.5 g.3.9.1 g.3.9.1 PDB: 1n8z_C* 3be1_A* 1s78_A* 3mzw_A* 3n85_A* 2a91_A* 3h3b_A Length = 608

 Score = 46.1 bits (108), Expect = 7e-05
 Identities = 19/201 (9%), Positives = 41/201 (20%), Gaps = 33/201 (16%)

Query: 1008 QNLSQNYY--YHQNLSLKYYCRRNL---SQNYYCHQNQSPNNYYYHLNLSQNYYFHQNQS 1062
            + L    Y    Q L +     R+L             +   + + +   Q     +N  
Sbjct: 413  RILHDGAYSLTLQGLGIHSLGLRSLRELGSGLALIHRNAHLCFVHTVPWDQ---LFRNPH 469

Query: 1063 QNYYYHQNLSQNYYYHQNLSLKYYCRRNLSQNYYCHQNQSQNYYYHQNQSQNYYYHQNQS 1122
            Q   +  N  +     + L     C           Q  + +++    +           
Sbjct: 470  QALLHSGNRPEEDCGLEGLVCNSLCAHGHCWGPGPTQCVNCSHFLRGQECVEECRVWKGL 529

Query: 1123 QKYYYHQN---------------------LSQNYYYHQNLSQNYYCHQNQSQNYYYHQNQ 1161
             + Y                          +       +   +  C            + 
Sbjct: 530  PREYVSDKRCLPCHPECQPQNSSETCFGSEADQCAACAHYKDSSSCVARCPSGVKPDLSY 589

Query: 1162 SQKYYYHQNLS--QNCYYHQN 1180
               + Y       Q C    N
Sbjct: 590  MPIWKYPDEEGICQPC--PIN 608

>3klk_A Glucansucrase; native form, open conformation, multidomain protein, glycosyltransferase, transferase; 1.65A {Lactobacillus reuteri} PDB: 3kll_A* 3hz3_A* Length = 1039

 Score = 45.9 bits (108), Expect = 1e-04
 Identities = 32/294 (10%), Positives = 71/294 (24%), Gaps = 55/294 (18%)

Query: 911  ILFEKAALKVQTKPEVFKVPPKDKDEDEPIFFNEPKSPPEKPH-HSPIPPPPPVLNPPNS 969
            +  +   L  +    V +        +     N                     L+    
Sbjct: 767  VPDQIYNLPGKEAVTVTRSDDHGTTWEVSPIKNVVYITNTIGGGEYQKKYGGEFLDTLQK 826

Query: 970  E--LVYKDKYTGVGGYFGAVPEIGQNYYFHQNQS------QNYYYHQNLSQNYYYHQNLS 1021
            E   ++   Y           +I +    + N +        Y    N     YY     
Sbjct: 827  EYPQLFSQVYPVTQTTIDPSVKIKEWSAKYFNGTNILHRGAGYVLRSN--DGKYY----- 879

Query: 1022 LKYYCRRNLSQNYYCHQNQSPNNYYYHLNLSQNYYFHQNQSQNYYYHQN--LSQNYYYHQ 1079
                              Q        +  ++ Y F +  +  +YY +N  + ++ +   
Sbjct: 880  ------------NLGTSTQQFLPSQLSVQDNEGYGFVKEGNNYHYYDENKQMVKDAFIQD 927

Query: 1080 NLSLKYYCRRNLS-----QNYYCHQNQSQNYYYHQNQS------------QNYYYHQNQS 1122
            ++   YY  +N +            N +   Y   N                YYY  +  
Sbjct: 928  SVGNWYYLDKNGNMVANQSPVEISSNGASGTYLFLNNGTSFRSGLVKTDAGTYYYDGDGR 987

Query: 1123 QKYYYHQNLSQNYYYHQN---LSQNYYCHQNQSQNYYYHQNQS---QKYYYHQN 1170
                   +     Y       L    +   + +   +  +      QK+++H +
Sbjct: 988  MVRNQTVSDGAMTYVLDENGKLVSESF--DSSATEAHPLKPGDLNGQKHHHHHH 1039

>1ki0_A Angiostatin; kringle domains, hydrolase; HET: BCN; 1.75A {Homo sapiens} SCOP: g.14.1.1 g.14.1.1 g.14.1.1 PDB: 2doh_X* 2doi_X 1cea_A 1ceb_A* 1b2i_A* 1pkr_A 2l0s_A 2kj4_A 1i5k_A 1hpj_A 1hpk_A* Length = 253

 Score = 44.4 bits (103), Expect = 1e-04
 Identities = 25/202 (12%), Positives = 65/202 (32%), Gaps = 13/202 (6%)

Query: 1026 CRRNLSQNYYCHQNQSPNNYYYHLNLSQNYYFHQNQSQN--YYYHQNLSQNYYYHQNLSL 1083
            C++  S + +  +       +    L +NY  + +      + Y  +  + Y Y   L  
Sbjct: 25   CQKWSSTSPHRPRFSPAT--HPSEGLEENYCRNPDNDPQGPWCYTTDPEKRYDYCDILEC 82

Query: 1084 KYYCRRNLSQNYYCHQNQSQNYYYHQNQSQNYYYHQNQSQKYYYHQNLSQNYYYHQNLSQ 1143
            +  C     +NY    +++ +    Q       +        + ++NL +NY  + +   
Sbjct: 83   EEECMHCSGENYDGKISKTMSGLECQAWDSQSPHAHGYIPSKFPNKNLKKNYCRNPDREL 142

Query: 1144 NYYCHQNQSQNYYYHQNQSQKYYYHQNLSQNCYYHQNRSQNYYYHQNLSQN--------- 1194
              +C        +   +  +      +        +   +NY  +  ++ +         
Sbjct: 143  RPWCFTTDPNKRWELCDIPRCTTPPPSSGPTYQCLKGTGENYRGNVAVTVSGHTCQHWSA 202

Query: 1195 YYYHQNQSQKNYYYHLNLSQNY 1216
               H ++     +   NL +NY
Sbjct: 203  QTPHTHERTPENFPCKNLDENY 224

>2grx_C Protein TONB; beta barrel, outer membrane, heterocomplex, inter-protein beta sheet, protein-protein, metal transport; HET: GCN KDO GMH FTT DAO MYR FCI; 3.30A {Escherichia coli} SCOP: d.212.1.2 PDB: 1xx3_A Length = 229

 Score = 43.5 bits (102), Expect = 2e-04
 Identities = 21/122 (17%), Positives = 35/122 (28%)

Query: 313 PEVPEPTKSQLPEVPEPTKPQLPEVLEPTTLQLPEDPEPTKPQLPEDPEPTKPQLPEVPE 372
             +  P  +Q   V   T   L           P      +P+   +P    P + E P+
Sbjct: 24  QVIELPAPAQPISVTMVTPADLEPPQAVQPPPEPVVEPEPEPEPIPEPPKEAPVVIEKPK 83

Query: 373 PTKPQLPEVLEPTKLQLPEDPEPTKPQLPEDPETTKPQLPEVPEPTKLQLPEVPEPTKPE 432
           P     P+ ++  + Q   D +P + +     E T P        T      V       
Sbjct: 84  PKPKPKPKPVKKVQEQPKRDVKPVESRPASPFENTAPARLTSSTATAATSKPVTSVASGP 143

Query: 433 LP 434
             
Sbjct: 144 RA 145

>2grx_C Protein TONB; beta barrel, outer membrane, heterocomplex, inter-protein beta sheet, protein-protein, metal transport; HET: GCN KDO GMH FTT DAO MYR FCI; 3.30A {Escherichia coli} SCOP: d.212.1.2 PDB: 1xx3_A Length = 229

 Score = 43.2 bits (101), Expect = 3e-04
 Identities = 21/123 (17%), Positives = 32/123 (26%)

Query: 532 KPEPELLLPPKPKPELLLPPKPEPEKLLLPPKPKPKLLLPPKPESELLLPPKPEPELIIP 591
               EL  P +P    ++ P        + P P+P +   P+PE     P +    +  P
Sbjct: 23  HQVIELPAPAQPISVTMVTPADLEPPQAVQPPPEPVVEPEPEPEPIPEPPKEAPVVIEKP 82

Query: 592 PKPEPEILIPPKPEPELLLPPKPEPEILLPPKPEPELLLPPKPEPEILLPPKPEPELLLP 651
                    P K   E         E       E                 KP   +   
Sbjct: 83  KPKPKPKPKPVKKVQEQPKRDVKPVESRPASPFENTAPARLTSSTATAATSKPVTSVASG 142

Query: 652 PKP 654
           P+ 
Sbjct: 143 PRA 145

>2grx_C Protein TONB; beta barrel, outer membrane, heterocomplex, inter-protein beta sheet, protein-protein, metal transport; HET: GCN KDO GMH FTT DAO MYR FCI; 3.30A {Escherichia coli} SCOP: d.212.1.2 PDB: 1xx3_A Length = 229

 Score = 41.6 bits (97), Expect = 7e-04
 Identities = 21/114 (18%), Positives = 30/114 (26%)

Query: 581 PPKPEPELIIPPKPEPEILIPPKPEPELLLPPKPEPEILLPPKPEPELLLPPKPEPEILL 640
                  ++ P   EP   + P PEP +   P+PEP    P +    +  P         
Sbjct: 32  AQPISVTMVTPADLEPPQAVQPPPEPVVEPEPEPEPIPEPPKEAPVVIEKPKPKPKPKPK 91

Query: 641 PPKPEPELLLPPKPESELLLPLKPEPEILLPPKPEPELLLPPKPEPELLLPPKP 694
           P K   E         E       E                 KP   +   P+ 
Sbjct: 92  PVKKVQEQPKRDVKPVESRPASPFENTAPARLTSSTATAATSKPVTSVASGPRA 145

>2grx_C Protein TONB; beta barrel, outer membrane, heterocomplex, inter-protein beta sheet, protein-protein, metal transport; HET: GCN KDO GMH FTT DAO MYR FCI; 3.30A {Escherichia coli} SCOP: d.212.1.2 PDB: 1xx3_A Length = 229

 Score = 41.2 bits (96), Expect = 9e-04
 Identities = 23/114 (20%), Positives = 32/114 (28%)

Query: 571 PPKPESELLLPPKPEPELIIPPKPEPEILIPPKPEPELLLPPKPEPEILLPPKPEPELLL 630
                  ++ P   EP   + P PEP +   P+PEP    P +    I  P         
Sbjct: 32  AQPISVTMVTPADLEPPQAVQPPPEPVVEPEPEPEPIPEPPKEAPVVIEKPKPKPKPKPK 91

Query: 631 PPKPEPEILLPPKPEPELLLPPKPESELLLPLKPEPEILLPPKPEPELLLPPKP 684
           P K   E         E       E+     L          KP   +   P+ 
Sbjct: 92  PVKKVQEQPKRDVKPVESRPASPFENTAPARLTSSTATAATSKPVTSVASGPRA 145

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	1235
2zuo_A	861	MVP, major vault protein; repeat domains, protein-	95.97
2zuo_A	861	MVP, major vault protein; repeat domains, protein-	95.15
3gnf_B	387	MVP, major vault protein; beta sheets, phosphoprot	88.84

>2zuo_A MVP, major vault protein; repeat domains, protein-protein complex, cytoplasm, ribonucleoprotein, structural protein; 3.50A {Rattus norvegicus} PDB: 2zv4_N 2zv5_a 2qzv_A

Probab=95.97  E-value=0.052  Score=66.73  Aligned_cols=210  Identities=18%  Similarity=0.152  Sum_probs=126.2

Q ss_pred             ccccccccCCCCcccccCCcccccccCCcccccCCCceeccCCCcccccCCCcccccCCCccccccccceeccCCCcccc
Q psy14307        698 TTTKTLLLDKKEPVLLDKKEPVLLDKKEPVLLDKKEPVLLDKKEPVLLDEKEPVLLDKKEPVLLDKKERVLLDKKEPVLL  777 (1235)
Q Consensus       698 ~tpk~dlLdk~EaVV~~e~e~vvl~esE~VV~~k~E~VvldE~e~Vv~dE~E~Vvlde~E~vV~de~E~Vv~de~E~vv~  777 (1235)
                      .-|+|+.++.+|.++...-.-++..-+.+.+  =..+|+.++...++.|+..+|.+.-|+.=++-..+..-|--||.++.
T Consensus        30 ~GP~t~~~q~~E~v~~~P~~mi~vPp~~YCi--I~NPv~r~~~g~~v~d~~gq~klr~g~~EiR~~q~pFPLyPgE~l~~  107 (861)
T 2zuo_A           30 VGPKTYIRQDNERVLFAPVRMVTVPPRHYCI--VANPVSRDTQSSVLFDITGQVRLRHADQEIRLAQDPFPLYPGEVLEK  107 (861)
T ss_dssp             CCSCCBCCSSCBCCSCSSSCCBCCCCCCCCC--CSSTTCEEEECCCCSCCSSCCCCSSSSEEEECTTCCCCCCSCCCSCC
T ss_pred             ECCeEEEeccCcccccCCceeEEeCCCceEE--EeCceeecCCCCeeeccCCceeecccceeeeccCCCCCCCCCccccc
Confidence            4578999999999887766666666666665  23556666666666666666666666555555555555555555533


Q ss_pred             cCCCceeeccCCceee------cCCcceeecCCCceeecCCCceeecCCCCeeecCCCCeEeccCCCeEec------cCC
Q psy14307        778 DKKEPVLLDKKEHVLL------DKKETVLLDKKEPVLLDKKEPILLDKKEPVLLDKKEPVLLDKKSPVLLD------KKG  845 (1235)
Q Consensus       778 deke~vv~~e~e~Vml------~e~e~vv~~~~e~v~l~~~ep~vl~~~~~Vvl~~k~pvvl~~k~~vvl~------~k~  845 (1235)
                      .=..--++....++.|      .+..++.+.+|+=.|+++=+.|+-...+-|+ +.=.++||..++++-|.      +..
T Consensus       108 ~v~~L~VI~~N~ALrLrAl~df~D~~g~~R~AGEeWLv~gPGtY~P~veEeVv-e~v~A~vl~~n~AL~LrA~~~f~D~~  186 (861)
T 2zuo_A          108 DITPLQVVLPNTALHLKALLDFEDKNGDKVMAGDEWLFEGPGTYIPQKEVEVV-EIIQATVIKQNQALRLRARKECFDRE  186 (861)
T ss_dssp             CCCCCCCCGGGCCEEEBCSSCSSCSSSSCCCTTCBCCBCSSCCCCSSSCCEEE-ECCCCCCCGGGCCEEECCCSSCCCTT
T ss_pred             CceeeeEecCCceEEEEEeeeEEcCCCcEeecCCEEEEECCceecCCCceEEE-EEEEEEEecCCcEEEEEEeeeEEcCC
Confidence            2222223444444433      1345667777776666655555544433332 23335555555555553      334


Q ss_pred             ceeecCCCceEecCCCceEecCCCCeeecCCCceeecCCCCeecc------CCCceeecCCCceeeccCCch
Q psy14307        846 PVILDKKEPVLLDKKEPVLLDKKEPVLLDKKAPVLLDKKEPVLLD------KKEPVLLDKKEPVLLDKKEPI  911 (1235)
Q Consensus       846 p~v~e~~~~vvl~~k~pvv~~~~~~Vvl~~k~pvv~~~k~~Vvl~------~~~p~m~d~~~~v~l~~k~p~  911 (1235)
                      ++.|..|+--|+..-|+++.+.-|-|+ +...++||..+++++|-      +.-.+.+.+|.--||+..++-
T Consensus       187 G~~R~aGEEWLVt~~gayiP~v~Eevv-~~V~a~VLte~eAL~LrA~~~F~D~~gv~RkaGe~WLVT~~gp~  257 (861)
T 2zuo_A          187 GKGRVTGEEWLVRSVGAYLPAVFEEVL-DLVDAVILTEKTALHLRALQNFRDLRGVLHRTGEEWLVTVQDTE  257 (861)
T ss_dssp             SSCCCTTCCCCBCSSSCCCCTTCCEEE-ECCCCCCCCTTCEEEEECCSSCBCTTCCBCCTTCEEEECSSCCC
T ss_pred             CcCccCCCeEEEeccceecCCCceEEE-EEEeeEEecCCcEEEEEEeeeeccccCceecCCCEEEEecCCcc
Confidence            666888888888887888888777665 44466666666666655      334556777777777655543

>2zuo_A MVP, major vault protein; repeat domains, protein-protein complex, cytoplasm, ribonucleoprotein, structural protein; 3.50A {Rattus norvegicus} PDB: 2zv4_N 2zv5_a 2qzv_A

Probab=95.15  E-value=0.066  Score=65.88  Aligned_cols=110  Identities=15%  Similarity=0.198  Sum_probs=54.3

Q ss_pred             CceeecCCCceeecCCCCeeecCCCCeEeccCCCeEecc-CCceeecCCCceEec-------CCCceEecCCCCeeecCC
Q psy14307        805 EPVLLDKKEPILLDKKEPVLLDKKEPVLLDKKSPVLLDK-KGPVILDKKEPVLLD-------KKEPVLLDKKEPVLLDKK  876 (1235)
Q Consensus       805 e~v~l~~~ep~vl~~~~~Vvl~~k~pvvl~~k~~vvl~~-k~p~v~e~~~~vvl~-------~k~pvv~~~~~~Vvl~~k  876 (1235)
                      +..||.-||-|+-.-....+|.+.++|+|.+.+..--.. +..+-+..|.=-||+       ...--|++.+..+.|+..
T Consensus       306 ~SffL~PgE~L~~gIq~v~VL~e~EaLlLrAle~f~d~~~~~~v~Rk~GdrWlI~GP~eYIP~~eveVve~R~AI~Lden  385 (861)
T 2zuo_A          306 KSFFLQPGERLERGIQDVYVLSEQQGLLLKALQPLEEGESEEKVSHQAGDCWLIRGPLEYVPSAKVEVVEERQAIPLDQN  385 (861)
T ss_dssp             EEECCCTTCEESSSSCBCEECCEEEEEEEEEESSCBSSCSTTCCCBCTTCCEEEEESCEECCCTTEEEEEEEECBCCCTT
T ss_pred             ccccCCCCcchhccceeeEEeCCCcEEEEEEeccccccccccceeeCCCcEEEEeCCeeeCCCCcEEEEEEEEeEEeCCC
Confidence            444555555554333334455555555555433211111 123344444333333       233335566667777777


Q ss_pred             Cc-eeecCCCCe-eccCCCceeecCCCceeeccCCchhhhh
Q psy14307        877 AP-VLLDKKEPV-LLDKKEPVLLDKKEPVLLDKKEPILFEK  915 (1235)
Q Consensus       877 ~p-vv~~~k~~V-vl~~~~p~m~d~~~~v~l~~k~p~l~~~  915 (1235)
                      ++ +|++.+-|. =+-.|+.+|+.+.+-+. ...-|-.+++
T Consensus       386 EgIYVrd~kTG~VR~V~G~~YmL~~~Eelw-eK~lp~~ve~  425 (861)
T 2zuo_A          386 EGIYVQDVKTGKVRAVIGSTYMLTQDEVLW-EKELPSGVEE  425 (861)
T ss_dssp             CEEEEEETTTCCEEEEESSCBCCCTTEEEC-CCCCTTHHHH
T ss_pred             ceEEEEEcCCccEEEEeccEEecCCCceEE-EEECCHHHHH
Confidence            77 455555533 34457889998876443 3333444443

>3gnf_B MVP, major vault protein; beta sheets, phosphoprotein, ribonucleoprotein, structural P; 2.10A {Mus musculus} PDB: 3gf5_A 3gng_A 1y7x_A

Probab=88.84  E-value=0.81  Score=52.49  Aligned_cols=205  Identities=17%  Similarity=0.153  Sum_probs=94.2

Q ss_pred             ccccccccCCCCcccccCCcccccccCCcccccCCCceeccCCCcccccCCCcccccCCCccccccccceeccCCCcccc
Q psy14307        698 TTTKTLLLDKKEPVLLDKKEPVLLDKKEPVLLDKKEPVLLDKKEPVLLDEKEPVLLDKKEPVLLDKKERVLLDKKEPVLL  777 (1235)
Q Consensus       698 ~tpk~dlLdk~EaVV~~e~e~vvl~esE~VV~~k~E~VvldE~e~Vv~dE~E~Vvlde~E~vV~de~E~Vv~de~E~vv~  777 (1235)
                      .-|+|+.++.+|.++...-.-++...+...+-.  .+++.++...+++|+..+|.+.-|+.=++-..+..-|.-||.|+.
T Consensus        34 ~GP~t~~~~~he~v~~~p~~~i~vpp~~YC~V~--NPv~r~~~g~~~~d~~gqv~lr~G~~EiR~~q~pFPLyPgE~l~~  111 (387)
T 3gnf_B           34 VGPKTYIRQDNERVLFAPVRMVTVPPRHYCIVA--NPVSRDAQSSVLFDVTGQVRLRHADQEIRLAQDPFPLYPGELLEK  111 (387)
T ss_dssp             ESSEEEECCTTEEECSSCEECEEECTTEEEEEE--SCBCBCTTSCBCBCSSSCBCBCTTCEEEECSEEEECCCTTCEEEE
T ss_pred             ECCeEeEhhhccccccCCceeEEcCCCCEEEEe--CCeeeCCCCCEeecCCCcEEEccccEEEEcCCCCCCCCCCcEeee
Confidence            347788888888887554444444444433322  233333333444444444444433333332223333333333321


Q ss_pred             cCCCceeeccCCceeec------CCcceeecCCCceeecC-------CCceeecCCCCeeecCCCCeEeccCCCeEeccC
Q psy14307        778 DKKEPVLLDKKEHVLLD------KKETVLLDKKEPVLLDK-------KEPILLDKKEPVLLDKKEPVLLDKKSPVLLDKK  844 (1235)
Q Consensus       778 deke~vv~~e~e~Vml~------e~e~vv~~~~e~v~l~~-------~ep~vl~~~~~Vvl~~k~pvvl~~k~~vvl~~k  844 (1235)
                      .-..--++...+++.|+      +..++.|-+|+=-|+++       .+-.|++.-.+++|..+.+|-|.+.... .|. 
T Consensus       112 ~v~~l~vi~~n~AL~LrAl~df~d~~g~~RvaGeeWLv~gPg~Y~P~veeeV~~~v~A~vl~~n~AL~LrA~~~F-~D~-  189 (387)
T 3gnf_B          112 DITPLQVVLPNTALHLKALLDFEDKNGDKVMAGDEWLFEGPGTYIPQKEVEVVEIIQATVIKQNQALRLRARKEC-FDR-  189 (387)
T ss_dssp             EEEECEEECTTEEEEEEESSCEECTTSCEECTTCEEEEESSEEECCCTTEEEEEEEECEEECTTEEEEEEESSSE-ECT-
T ss_pred             cccceEEECCCCeEEEEEecceEcCCCCEeccCCEEEEeCCEeecCCCcEEEecccccEEecCCceEEEEEEeeE-ECC-
Confidence            11100022222222222      22333344443333332       2333444444666666666666666543 222 


Q ss_pred             CceeecCCCceEecCCCceEecCCC-------CeeecCCCceeecCCCCeeccCCCceeecCCCceeeccC
Q psy14307        845 GPVILDKKEPVLLDKKEPVLLDKKE-------PVLLDKKAPVLLDKKEPVLLDKKEPVLLDKKEPVLLDKK  908 (1235)
Q Consensus       845 ~p~v~e~~~~vvl~~k~pvv~~~~~-------~Vvl~~k~pvv~~~k~~Vvl~~~~p~m~d~~~~v~l~~k  908 (1235)
                      ..+.|.+|+--|+..-|+++-+.-|       +.+|..++++.+.+.....=..|  +.+.+|.--||+..
T Consensus       190 ~G~~R~aGEEWLv~~~gaYiP~v~EeVv~~v~a~VL~e~eAL~LrA~~~F~D~~G--~~Rk~GeeWLvt~~  258 (387)
T 3gnf_B          190 DGKERVTGEEWLVRSVGAYLPAVFEEVLDLVDAVILTEKTALHLRARQNFKDLRG--VAHRTGEEWLVTVQ  258 (387)
T ss_dssp             TCCEECTTCEEEECCCEEECCCTTEEEEEEEECEECCTTEEEEEEESSCEECTTS--CEECTTCEEEEETT
T ss_pred             CCCEeecCcEEEEecCceEcCCCceEEEEEEEeEEeCCCcEEEEEEeeeeEcCCC--cCcCCCCeeEEeeC
Confidence            3455777777777666666655543       34444444444444443322222  34666666666653

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	1235
d2biba1	233	b.109.1.1 (A:309-541) Teichoic acid phosphorylchol	2e-19
d2biba1	233	b.109.1.1 (A:309-541) Teichoic acid phosphorylchol	3e-18
d2biba1	233	b.109.1.1 (A:309-541) Teichoic acid phosphorylchol	2e-17
d2biba1	233	b.109.1.1 (A:309-541) Teichoic acid phosphorylchol	2e-17
d2biba1	233	b.109.1.1 (A:309-541) Teichoic acid phosphorylchol	5e-17
d2biba1	233	b.109.1.1 (A:309-541) Teichoic acid phosphorylchol	7e-13
d2biba1	233	b.109.1.1 (A:309-541) Teichoic acid phosphorylchol	4e-12
d2biba1	233	b.109.1.1 (A:309-541) Teichoic acid phosphorylchol	1e-07
d2biba1	233	b.109.1.1 (A:309-541) Teichoic acid phosphorylchol	0.001
d2j8ga1	149	b.109.1.1 (A:191-339) C-terminal domain of endolys	1e-10
d2j8ga1	149	b.109.1.1 (A:191-339) C-terminal domain of endolys	7e-10
d2j8ga1	149	b.109.1.1 (A:191-339) C-terminal domain of endolys	6e-08
d2j8ga1	149	b.109.1.1 (A:191-339) C-terminal domain of endolys	7e-08
d2j8ga1	149	b.109.1.1 (A:191-339) C-terminal domain of endolys	2e-07
d2j8ga1	149	b.109.1.1 (A:191-339) C-terminal domain of endolys	5e-05
d2j8ga1	149	b.109.1.1 (A:191-339) C-terminal domain of endolys	3e-04
d2j8ga1	149	b.109.1.1 (A:191-339) C-terminal domain of endolys	0.003
d1ouva_	265	a.118.18.1 (A:) Cysteine rich protein C (HcpC) {He	2e-10
d3bmva4	406	c.1.8.1 (A:1-406) Cyclodextrin glycosyltransferase	9e-09
d2aaaa2	381	c.1.8.1 (A:1-381) Fungal alpha-amylases {Aspergill	4e-08
d2aaaa2	381	c.1.8.1 (A:1-381) Fungal alpha-amylases {Aspergill	2e-05
d1z7xw1	460	c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (	2e-07
d1h3ga3	422	c.1.8.1 (A:96-517) Cyclomaltodextrinase, central d	5e-07
d1jtdb_	273	b.69.5.2 (B:) beta-lactamase inhibitor protein-II,	8e-07
d1jtdb_	273	b.69.5.2 (B:) beta-lactamase inhibitor protein-II,	1e-05
d1jtdb_	273	b.69.5.2 (B:) beta-lactamase inhibitor protein-II,	0.001
d2bm5a1	181	b.80.8.1 (A:2-182) Hypothetical protein Rv3361c (M	9e-07
d2bm5a1	181	b.80.8.1 (A:2-182) Hypothetical protein Rv3361c (M	2e-05
d2bm5a1	181	b.80.8.1 (A:2-182) Hypothetical protein Rv3361c (M	2e-05
d2bm5a1	181	b.80.8.1 (A:2-182) Hypothetical protein Rv3361c (M	4e-05
d1jl5a_	353	c.10.2.6 (A:) Leucine rich effector protein YopM {	1e-06
d2h6fa1	315	a.118.6.1 (A:55-369) Protein farnesyltransferase a	1e-05
d2dtge6	155	g.3.9.1 (E:157-311) Insulin receptor {Human (Homo	2e-05
d2dtge6	155	g.3.9.1 (E:157-311) Insulin receptor {Human (Homo	2e-05
d2dtge6	155	g.3.9.1 (E:157-311) Insulin receptor {Human (Homo	0.004
d2j8ka1	175	b.80.8.1 (A:1-175) NP275-NP276 {Nostoc punctiforme	2e-05
d2j8ka1	175	b.80.8.1 (A:1-175) NP275-NP276 {Nostoc punctiforme	1e-04
d1n8yc3	157	g.3.9.1 (C:166-322) Protooncoprotein Her2 extracel	3e-05
d1n8yc3	157	g.3.9.1 (C:166-322) Protooncoprotein Her2 extracel	0.004
d1xnfa_	259	a.118.8.1 (A:) Lipoprotein NlpI {Escherichia coli	3e-05
d1hupa1	117	d.169.1.1 (A:112-228) Mannose-binding protein A, C	6e-05
d1hupa1	117	d.169.1.1 (A:112-228) Mannose-binding protein A, C	0.001
d1hupa1	117	d.169.1.1 (A:112-228) Mannose-binding protein A, C	0.002
d1aeca_	218	d.3.1.1 (A:) Actinidin {Chinese gooseberry or kiwi	7e-05
d1igra3	150	g.3.9.1 (A:150-299) Type 1 insulin-like growth fac	7e-05
d1igra3	150	g.3.9.1 (A:150-299) Type 1 insulin-like growth fac	0.002
d1m6ba3	145	g.3.9.1 (A:166-310) Receptor protein-tyrosine kina	1e-04
d1m6ba3	145	g.3.9.1 (A:166-310) Receptor protein-tyrosine kina	2e-04
d1m6ba3	145	g.3.9.1 (A:166-310) Receptor protein-tyrosine kina	0.002
d1rdl1_	111	d.169.1.1 (1:) Mannose-binding protein A, C-lectin	2e-04
d1qg8a_	255	c.68.1.1 (A:) Spore coat polysaccharide biosynthes	2e-04
d1moxa3	149	g.3.9.1 (A:163-311) EGF receptor Cys-rich domains	2e-04
d1moxa3	149	g.3.9.1 (A:163-311) EGF receptor Cys-rich domains	3e-04
d1moxa3	149	g.3.9.1 (A:163-311) EGF receptor Cys-rich domains	5e-04
d1moxa3	149	g.3.9.1 (A:163-311) EGF receptor Cys-rich domains	0.001
d1moxa3	149	g.3.9.1 (A:163-311) EGF receptor Cys-rich domains	0.002
d1olta_	441	c.1.28.2 (A:) Oxygen-independent coproporphyrinoge	3e-04
d1olta_	441	c.1.28.2 (A:) Oxygen-independent coproporphyrinoge	0.001
d1v2da_	368	c.67.1.1 (A:) Glutamine aminotransferase {Thermus	3e-04
g1k3b.1	233	d.3.1.1 (B:,C:) Cathepsin C (dipeptidyl peptidase	3e-04
d1me4a_	215	d.3.1.1 (A:) Cruzain {Trypanosoma cruzi [TaxId: 56	3e-04
d1o69a_	374	c.67.1.4 (A:) Aminotransferase homolog WlaK (PglE,	3e-04
d1wmza_	140	d.169.1.1 (A:) Lectin CEL-I {Cucumaria echinata [T	4e-04
d1qhoa4	407	c.1.8.1 (A:1-407) Cyclodextrin glycosyltransferase	4e-04
d1qhoa4	407	c.1.8.1 (A:1-407) Cyclodextrin glycosyltransferase	0.003
d1upsa2	131	b.42.2.3 (A:290-420) GlcNAc-alpha-1,4-Gal-releasin	4e-04
d1upsa2	131	b.42.2.3 (A:290-420) GlcNAc-alpha-1,4-Gal-releasin	0.002
d1zu2a1	145	a.118.8.1 (A:1-145) Mitochondrial import receptor	5e-04
d1hc7a2	272	d.104.1.1 (A:5-276) Prolyl-tRNA synthetase (ProRS)	5e-04
d1mdoa_	376	c.67.1.4 (A:) Aminotransferase ArnB {Salmonella ty	6e-04
d1mdoa_	376	c.67.1.4 (A:) Aminotransferase ArnB {Salmonella ty	0.001
d2r6na1	215	d.3.1.1 (A:1-215) (Pro)cathepsin K {Human (Homo sa	6e-04
d1i24a_	393	c.2.1.2 (A:) Sulfolipid biosynthesis protein SQD1	6e-04
d1r7aa2	434	c.1.8.1 (A:1-434) Sucrose phosphorylase {Bifidobac	7e-04
d1r7aa2	434	c.1.8.1 (A:1-434) Sucrose phosphorylase {Bifidobac	0.001
d1gy8a_	383	c.2.1.2 (A:) Uridine diphosphogalactose-4-epimeras	8e-04
d1wpxa1	421	c.69.1.5 (A:1-421) Serine carboxypeptidase II {Bak	0.001
d1tn3a_	137	d.169.1.1 (A:) Tetranectin {Human (Homo sapiens) [	0.001
d2guya2	381	c.1.8.1 (A:1-381) Fungal alpha-amylases {Aspergill	0.001
d1khqa_	212	d.3.1.1 (A:) Papain {Papaya (Carica papaya) [TaxId	0.001
d1iwda_	215	d.3.1.1 (A:) Ervatamin B {Adam's apple (Ervatamia	0.002
d1s4va_	224	d.3.1.1 (A:) Vignain (bean endopeptidase) {Castor	0.002
d1qxma2	138	b.42.2.1 (A:149-286) Hemagglutinin component Ha1 {	0.002
d1jc9a_	220	d.171.1.1 (A:) Tachylectin 5a {Japanese horseshoe	0.002
d1fcha_	323	a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting	0.002
d1ppoa_	216	d.3.1.1 (A:) Caricain (protease omega) {Papaya (Ca	0.002
d1xwdc1	242	c.10.2.7 (C:18-259) Follicle-stimulating hormone r	0.003
d1cd0a_	111	b.1.1.1 (A:) Immunoglobulin light chain lambda var	0.003
d1m6da_	214	d.3.1.1 (A:) Cathepsin F {Human (Homo sapiens) [Ta	0.003
d1b9ha_	384	c.67.1.4 (A:) 3-amino-5-hydroxybenzoic acid syntha	0.004

>d1ouva_ a.118.18.1 (A:) Cysteine rich protein C (HcpC) {Helicobacter pylori [TaxId: 210]} Length = 265

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: HCP-like
family: HCP-like
domain: Cysteine rich protein C (HcpC)
species: Helicobacter pylori [TaxId: 210]

 Score = 60.3 bits (144), Expect = 2e-10
 Identities = 20/245 (8%), Positives = 56/245 (22%), Gaps = 24/245 (9%)

Query: 989  EIGQNYYFHQNQSQNY-----YYHQNLSQNYYYHQ-NLSLKYYCRRNLSQNYYCHQNQSP 1042
             +G   Y    + +++     Y+ +           NL + YY  + + +N         
Sbjct: 7    GLGAKSY----KEKDFTQAKKYFEKACDLKENSGCFNLGVLYYQGQGVEKNLKKA----- 57

Query: 1043 NNYYYHLNLSQNYYFHQNQSQNYYYHQNLSQNYYYHQNLSLKYYCRRNLSQNYYCHQNQS 1102
                     S           N  +            + +     +         +    
Sbjct: 58   --------ASFYAKACDLNYSNGCHLLGNLYYSGQGVSQNTNKALQYYSKACDLKYAEGC 109

Query: 1103 QNYYYHQNQSQNYYYHQNQSQKYYYHQNLSQNYYYHQNLSQNYYCHQNQSQNYYYHQNQS 1162
             +     +  +       ++ +Y+       +      L   Y   +   ++        
Sbjct: 110  ASLGGIYHDGKVVTRDFKKAVEYFTKACDLNDGDGCTILGSLYDAGRGTPKDLKKALASY 169

Query: 1163 QKYYYHQNLSQNCYY-HQNRSQNYYYHQNLSQNYYYHQNQSQKNYYYHLNLSQNYYYHQN 1221
             K    ++        +                  Y +    +N     NL    Y  + 
Sbjct: 170  DKACDLKDSPGCFNAGNMYHHGEGATKNFKEALARYSKACELENGGGCFNLGAMQYNGEG 229

Query: 1222 LSQNY 1226
            +++N 
Sbjct: 230  VTRNE 234

>d3bmva4 c.1.8.1 (A:1-406) Cyclodextrin glycosyltransferase {Thermoanaerobacterium [TaxId: 28895]} Length = 406

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: (Trans)glycosidases
family: Amylase, catalytic domain
domain: Cyclodextrin glycosyltransferase
species: Thermoanaerobacterium [TaxId: 28895]

 Score = 56.6 bits (135), Expect = 9e-09
 Identities = 22/272 (8%), Positives = 67/272 (24%), Gaps = 12/272 (4%)

Query: 964  LNPPNSELVYKDKYTGVGGYFGAVPEIGQNYYFHQNQSQNYYYHQNLSQNYYYHQNLSLK 1023
            +  P   +      +  GG         +++        N Y+          +   +  
Sbjct: 76   IPQPVENIYAVLPDSTFGGSTSYHGYWARDFK-----RTNPYFGSFTDFQNLINTAHAHN 130

Query: 1024 YYCRRNLSQNYYCHQNQSPNNYYYHLNLSQNYYF---HQNQSQNYYYHQNLSQNYYYHQN 1080
                 + + N+    +++   Y  +  L  N      + N +  Y++H   +    Y   
Sbjct: 131  IKVIIDFAPNHTSPASETDPTYAENGRLYDNGTLLGGYTNDTNGYFHHYGGTDFSSYEDG 190

Query: 1081 LSLKYYCRRNLSQNYYCHQNQSQNYYYHQNQSQNYYYHQNQSQKYYYHQNLSQNYYYHQN 1140
                 Y       +     +   +Y     +                H        +  +
Sbjct: 191  ----IYRNLFDLADLNQQNSTIDSYLKSAIKVWLDMGIDGIRLDAVKHMPFGWQKNFMDS 246

Query: 1141 LSQNYYCHQNQSQNYYYHQNQSQKYYYHQNLSQNCYYHQNRSQNYYYHQNLSQNYYYHQN 1200
            +                ++      Y+      +    +   +     ++ +   Y   +
Sbjct: 247  ILSYRPVFTFGEWFLGTNEIDVNNTYFANESGMSLLDFRFSQKVRQVFRDNTDTMYGLDS 306

Query: 1201 QSQKNYYYHLNLSQNYYYHQNLSQNYYYHQNS 1232
              Q     +  ++    +  N   + +Y+  S
Sbjct: 307  MIQSTASDYNFINDMVTFIDNHDMDRFYNGGS 338

>d2aaaa2 c.1.8.1 (A:1-381) Fungal alpha-amylases {Aspergillus niger, acid amylase [TaxId: 5061]} Length = 381

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: (Trans)glycosidases
family: Amylase, catalytic domain
domain: Fungal alpha-amylases
species: Aspergillus niger, acid amylase [TaxId: 5061]

 Score = 54.7 bits (130), Expect = 4e-08
 Identities = 19/239 (7%), Positives = 56/239 (23%), Gaps = 7/239 (2%)

Query: 995  YFHQNQSQNYYYHQNLSQNYYYHQNLSLKYYCRRNLSQNYYCHQNQSPNNYYYHLNLSQN 1054
               Q+ +    YH    Q  Y   +     +   +  ++     +         +     
Sbjct: 68   QLPQDTADGEAYHGYWQQKIYDVNS----NFGTADNLKSLSDALHARGMYLMVDVVPDHM 123

Query: 1055 YYFHQNQSQNYYYHQNLSQNYYYHQNLSLKYYCRRNLSQNYYCHQNQSQNYYYHQNQSQN 1114
             Y       +Y        + Y+H    +  +    + ++ +             + ++ 
Sbjct: 124  GYAGNGNDVDYSVFDPFDSSSYFHPYCLITDWDNLTMVEDCWEGDTIV--SLPDLDTTET 181

Query: 1115 YYYHQNQSQKYYYHQNLSQNYYYHQNLSQNYYCHQNQSQNYYYHQNQSQKYYYHQNLSQN 1174
                           N S +     ++ +                   +    +      
Sbjct: 182  AVRTIWYDWVADLVSNYSVDGLRIDSVLEVQPDFFPGYNKASGVYCVGEIDNGNPASDCP 241

Query: 1175 CYYHQNRSQNYYYHQNLSQNYYYHQNQSQKNYYYHLNLSQNYYYHQNLSQNYYYHQNSF 1233
                 +   NY  +  L    +   + S  N Y  +    +      L  N+  + ++ 
Sbjct: 242  YQKVLDGVLNYPIYWQLL-YAFESSSGSISNLYNMIKSVASDCSDPTLLGNFIENHDNP 299

>d2aaaa2 c.1.8.1 (A:1-381) Fungal alpha-amylases {Aspergillus niger, acid amylase [TaxId: 5061]} Length = 381

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: (Trans)glycosidases
family: Amylase, catalytic domain
domain: Fungal alpha-amylases
species: Aspergillus niger, acid amylase [TaxId: 5061]

 Score = 45.8 bits (107), Expect = 2e-05
 Identities = 20/243 (8%), Positives = 54/243 (22%), Gaps = 8/243 (3%)

Query: 960  PPPVLNPPNSELVYKDKYTGVGGYFGAVPEIGQNYYFHQNQSQNYYYHQNLSQNYYYHQN 1019
             P     P      +  +         V     N  F    +         ++  Y   +
Sbjct: 63   SPITEQLPQDTADGEAYHGYWQQKIYDV-----NSNFGTADNLKSLSDALHARGMYLMVD 117

Query: 1020 LSLKYYCRR-NLSQNYYCHQNQSPNNYYYHLNLSQNYYFHQNQSQNYYYHQNLSQNYYYH 1078
            +   +     N +   Y   +   ++ Y+H       + +    ++ +    +       
Sbjct: 118  VVPDHMGYAGNGNDVDYSVFDPFDSSSYFHPYCLITDWDNLTMVEDCWEGDTIV--SLPD 175

Query: 1079 QNLSLKYYCRRNLSQNYYCHQNQSQNYYYHQNQSQNYYYHQNQSQKYYYHQNLSQNYYYH 1138
             + +                 N S +     +  +          K      + +    +
Sbjct: 176  LDTTETAVRTIWYDWVADLVSNYSVDGLRIDSVLEVQPDFFPGYNKASGVYCVGEIDNGN 235

Query: 1139 QNLSQNYYCHQNQSQNYYYHQNQSQKYYYHQNLSQNCYYHQNRSQNYYYHQNLSQNYYYH 1198
                  Y    +   NY  +      +        N Y       +      L  N+  +
Sbjct: 236  PASDCPYQKVLDGVLNYPIYWQLLYAFESSSGSISNLYNMIKSVASDCSDPTLLGNFIEN 295

Query: 1199 QNQ 1201
             + 
Sbjct: 296  HDN 298

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 53.1 bits (125), Expect = 2e-07
 Identities = 13/226 (5%), Positives = 32/226 (14%), Gaps = 2/226 (0%)

Query: 992  QNYYFHQNQSQNYYYHQNLSQNYYYHQNLSLKYYCRRNLSQNYYCHQNQSPNNYYYHLNL 1051
                     S               +              ++  C             + 
Sbjct: 154  SAASCEPLASVLRAKPDFKELTVSNNDINEAGVRVLCQGLKDSPCQLEALKLESCGVTSD 213

Query: 1052 SQNYYFHQNQSQNYYYHQNLSQNYYYHQNLSLKYYCRRNLSQNYYCHQNQSQNYYYHQNQ 1111
            +         S+       L  N      ++       + S                   
Sbjct: 214  NCRDLCGIVASKASLRELALGSNKLGDVGMAELCPGLLHPSSRLRTLWIWECGITAKGCG 273

Query: 1112 SQNYYYHQNQSQKYYYHQNLSQNYYYHQNLSQNYYCHQNQSQNYYYHQNQSQKYYYHQNL 1171
                     +S K              + L +       Q ++ +               
Sbjct: 274  DLCRVLRAKESLKELSLAGNELGDEGARLLCETLLEPGCQLESLWVKSCSFTAACCSHFS 333

Query: 1172 SQNCYYHQNRSQNYYYHQNLSQNYYYHQNQSQKNYYY--HLNLSQN 1215
            S               ++              +       L L+  
Sbjct: 334  SVLAQNRFLLELQISNNRLEDAGVRELCQGLGQPGSVLRVLWLADC 379

>d1h3ga3 c.1.8.1 (A:96-517) Cyclomaltodextrinase, central domain {Flavobacterium sp. 92 [TaxId: 197856]} Length = 422

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: (Trans)glycosidases
family: Amylase, catalytic domain
domain: Cyclomaltodextrinase, central domain
species: Flavobacterium sp. 92 [TaxId: 197856]

 Score = 51.3 bits (121), Expect = 5e-07
 Identities = 23/238 (9%), Positives = 55/238 (23%), Gaps = 2/238 (0%)

Query: 996  FHQNQSQNYYYHQNLSQNYYYHQNLSLKYYCRRNLSQNYYCHQNQSPNNY-YYHLNLSQN 1054
              +N +  Y YH   + ++Y              LS            +    H+     
Sbjct: 75   LVENDAAAYSYHGYAATDHYRIDPRYGSNEDFVRLSTEARKRGMGLIQDVVLSHIGKHHW 134

Query: 1055 YYFHQNQSQNYYYHQNLSQNYYYHQNLSLKYYCRRNLSQNYYCHQNQSQNYYYHQNQSQN 1114
            +           Y        ++   +   Y  + +          +        N    
Sbjct: 135  WMKDLPTPDWINYGGKFVPTQHHRVAVQDPYAAQADSENFTKGWFVEGMPDLNQTNPLVA 194

Query: 1115 YYYHQNQSQKYYYHQNLSQNYYYHQNLSQNYYCHQNQSQNYYYHQNQSQKYYYHQNLSQN 1174
             Y  QN      Y          +      +     +     Y +       +   +   
Sbjct: 195  NYLIQNNIWWIEYAGLSGLRIDTYGYSDGAFLTEYTRRLMAEYPRLNMVGEEWSTRVPVV 254

Query: 1175 CYYHQNRSQNYYYHQNLSQNYYYHQNQSQKNYYYHLNLSQNYYY-HQNLSQNYYYHQN 1231
              + + ++    Y  +L     +    + +N              ++ LS +Y Y + 
Sbjct: 255  ARWQRGKANFDGYTSHLPSLMDFPLVDAMRNALSKTGEENGLNEVYETLSLDYLYPEP 312

>d1jtdb_ b.69.5.2 (B:) beta-lactamase inhibitor protein-II, BLIP-II {Streptomyces exfoliatus [TaxId: 1905]} Length = 273

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: RCC1/BLIP-II
family: beta-lactamase inhibitor protein-II, BLIP-II
domain: beta-lactamase inhibitor protein-II, BLIP-II
species: Streptomyces exfoliatus [TaxId: 1905]

 Score = 49.8 bits (117), Expect = 8e-07
 Identities = 8/171 (4%), Positives = 28/171 (16%), Gaps = 5/171 (2%)

Query: 1043 NNYYYHLNLSQNYYFHQNQSQNYYYHQNLSQNYYYHQNLSLKYYCRRNLSQNYYCHQNQS 1102
             N    L +        +      YH    ++         +       ++        +
Sbjct: 51   ANLNGQLTMPAATQSGVDAIAAGNYHSLALKDGEVIAWGGNEDGQTTVPAEARSGVDAIA 110

Query: 1103 QNYYYHQNQSQNYYYHQNQSQKYYYHQNLSQNYYYHQNLSQNYYCHQNQSQNYYYHQNQS 1162
               +                                      Y     ++       +  
Sbjct: 111  AGAWASYALKDGKVIAWGDDSDGQTTVPAEAQSGVTALDGGVYTALAVKNGGVIAWGDNY 170

Query: 1163 QKYYYHQNLSQNCYYHQNRSQNYYYHQNLSQNYYYHQNQSQKNYYYHLNLS 1213
              +      ++      + +   ++   L             N Y    + 
Sbjct: 171  --FGQTTVPAEAQSGVDDVAGGIFHSLALKDGKVIAWG---DNRYKQTTVP 216

>d1jtdb_ b.69.5.2 (B:) beta-lactamase inhibitor protein-II, BLIP-II {Streptomyces exfoliatus [TaxId: 1905]} Length = 273

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: RCC1/BLIP-II
family: beta-lactamase inhibitor protein-II, BLIP-II
domain: beta-lactamase inhibitor protein-II, BLIP-II
species: Streptomyces exfoliatus [TaxId: 1905]

 Score = 45.9 bits (107), Expect = 1e-05
 Identities = 10/163 (6%), Positives = 28/163 (17%), Gaps = 1/163 (0%)

Query: 991  GQNYYFHQNQSQNYYYHQNLSQNYYYHQNLSLKYYCRRNLSQNYYCHQNQSPNNYYYHLN 1050
            G N    Q            +     + +L+LK         N                 
Sbjct: 50   GANLNG-QLTMPAATQSGVDAIAAGNYHSLALKDGEVIAWGGNEDGQTTVPAEARSGVDA 108

Query: 1051 LSQNYYFHQNQSQNYYYHQNLSQNYYYHQNLSLKYYCRRNLSQNYYCHQNQSQNYYYHQN 1110
            ++   +                 +         +          Y     ++       +
Sbjct: 109  IAAGAWASYALKDGKVIAWGDDSDGQTTVPAEAQSGVTALDGGVYTALAVKNGGVIAWGD 168

Query: 1111 QSQNYYYHQNQSQKYYYHQNLSQNYYYHQNLSQNYYCHQNQSQ 1153
                      ++Q           +       +      N+ +
Sbjct: 169  NYFGQTTVPAEAQSGVDDVAGGIFHSLALKDGKVIAWGDNRYK 211

>d1jtdb_ b.69.5.2 (B:) beta-lactamase inhibitor protein-II, BLIP-II {Streptomyces exfoliatus [TaxId: 1905]} Length = 273

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: RCC1/BLIP-II
family: beta-lactamase inhibitor protein-II, BLIP-II
domain: beta-lactamase inhibitor protein-II, BLIP-II
species: Streptomyces exfoliatus [TaxId: 1905]

 Score = 39.7 bits (91), Expect = 0.001
 Identities = 5/136 (3%), Positives = 15/136 (11%)

Query: 1094 NYYCHQNQSQNYYYHQNQSQNYYYHQNQSQKYYYHQNLSQNYYYHQNLSQNYYCHQNQSQ 1153
            N               +      YH    +                  ++        + 
Sbjct: 52   NLNGQLTMPAATQSGVDAIAAGNYHSLALKDGEVIAWGGNEDGQTTVPAEARSGVDAIAA 111

Query: 1154 NYYYHQNQSQKYYYHQNLSQNCYYHQNRSQNYYYHQNLSQNYYYHQNQSQKNYYYHLNLS 1213
              +                 +                    Y     ++     +  N  
Sbjct: 112  GAWASYALKDGKVIAWGDDSDGQTTVPAEAQSGVTALDGGVYTALAVKNGGVIAWGDNYF 171

Query: 1214 QNYYYHQNLSQNYYYH 1229
                            
Sbjct: 172  GQTTVPAEAQSGVDDV 187

>d2bm5a1 b.80.8.1 (A:2-182) Hypothetical protein Rv3361c (MT3469) {Mycobacterium tuberculosis [TaxId: 1773]} Length = 181

class: All beta proteins
fold: Single-stranded right-handed beta-helix
superfamily: Pentapeptide repeat-like
family: Pentapeptide repeats
domain: Hypothetical protein Rv3361c (MT3469)
species: Mycobacterium tuberculosis [TaxId: 1773]

 Score = 48.1 bits (113), Expect = 9e-07
 Identities = 7/138 (5%), Positives = 29/138 (21%), Gaps = 5/138 (3%)

Query: 1068 HQNLSQNYYYHQNLSLKYYCRRNLSQNYYCHQNQSQNYYYHQNQSQNYYYHQNQSQKYYY 1127
             ++LS+ +      S   +   NL+++ +         +       + +   +     + 
Sbjct: 15   DEDLSRLHTERAMFSECDFSGVNLAESQHRGSAFRNCTFERTTLWHSTFAQCSMLGSVFV 74

Query: 1128 HQNLSQNYYYHQNLSQNYYCHQNQSQNYYYHQNQSQKYYYHQNLSQNCYYHQNRSQNYYY 1187
               L        + +       +            +      +L +              
Sbjct: 75   ACRLRPLTLDDVDFTLAVLGGNDLRGLNLTGCRLRETSLVDTDLRKCVLRG-----ADLS 129

Query: 1188 HQNLSQNYYYHQNQSQKN 1205
                +       +     
Sbjct: 130  GARTTGARLDDADLRGAT 147

>d2bm5a1 b.80.8.1 (A:2-182) Hypothetical protein Rv3361c (MT3469) {Mycobacterium tuberculosis [TaxId: 1773]} Length = 181

class: All beta proteins
fold: Single-stranded right-handed beta-helix
superfamily: Pentapeptide repeat-like
family: Pentapeptide repeats
domain: Hypothetical protein Rv3361c (MT3469)
species: Mycobacterium tuberculosis [TaxId: 1773]

 Score = 44.3 bits (103), Expect = 2e-05
 Identities = 8/154 (5%), Positives = 34/154 (22%), Gaps = 16/154 (10%)

Query: 1070 NLSQNYYYHQNLSLKYYCRRNLSQNYYCHQNQSQNYYYHQNQSQNYYYHQNQSQKYYYHQ 1129
              +   +  ++LS  +  R   S+  +   N +++ +         +         +   
Sbjct: 7    EFTGRDFRDEDLSRLHTERAMFSECDFSGVNLAESQHRGSAFRNCTFERTTLWHSTFAQC 66

Query: 1130 NLSQNYYYHQNLSQNYYCHQNQSQNYYYHQNQSQKYYYHQNLSQNCYYHQNRSQNYYYHQ 1189
            ++  + +    L        + +       +          L +      +         
Sbjct: 67   SMLGSVFVACRLRPLTLDDVDFTLAVLGGNDLRGLNLTGCRLRETSLVDTD--------- 117

Query: 1190 NLSQNYYYHQNQSQKNYYYHLNLSQNYYYHQNLS 1223
                     +   +         +       +L 
Sbjct: 118  -------LRKCVLRGADLSGARTTGARLDDADLR 144

>d2bm5a1 b.80.8.1 (A:2-182) Hypothetical protein Rv3361c (MT3469) {Mycobacterium tuberculosis [TaxId: 1773]} Length = 181

class: All beta proteins
fold: Single-stranded right-handed beta-helix
superfamily: Pentapeptide repeat-like
family: Pentapeptide repeats
domain: Hypothetical protein Rv3361c (MT3469)
species: Mycobacterium tuberculosis [TaxId: 1773]

 Score = 44.3 bits (103), Expect = 2e-05
 Identities = 9/136 (6%), Positives = 27/136 (19%), Gaps = 6/136 (4%)

Query: 1007 HQNLSQNYYYHQNLSLKYYCRRNLSQNYYCHQNQSPNNYYYHLNLSQNYYFHQNQSQNYY 1066
             ++LS+ +      S   +   NL+++ +         +         +         + 
Sbjct: 15   DEDLSRLHTERAMFSECDFSGVNLAESQHRGSAFRNCTFERTTLWHSTFAQCSMLGSVFV 74

Query: 1067 YHQNLSQNYYYHQNLSLKYYCRRNLSQNYYCHQNQSQNYYYHQNQSQNYYYHQNQSQKYY 1126
              +                +    L  N     N +       +                
Sbjct: 75   ACRLRPLTLDDV------DFTLAVLGGNDLRGLNLTGCRLRETSLVDTDLRKCVLRGADL 128

Query: 1127 YHQNLSQNYYYHQNLS 1142
                 +       +L 
Sbjct: 129  SGARTTGARLDDADLR 144

>d2bm5a1 b.80.8.1 (A:2-182) Hypothetical protein Rv3361c (MT3469) {Mycobacterium tuberculosis [TaxId: 1773]} Length = 181

class: All beta proteins
fold: Single-stranded right-handed beta-helix
superfamily: Pentapeptide repeat-like
family: Pentapeptide repeats
domain: Hypothetical protein Rv3361c (MT3469)
species: Mycobacterium tuberculosis [TaxId: 1773]

 Score = 43.5 bits (101), Expect = 4e-05
 Identities = 9/133 (6%), Positives = 32/133 (24%), Gaps = 5/133 (3%)

Query: 1048 HLNLSQNYYFHQNQSQNYYYHQNLSQNYYYHQNLSLKYYCRRNLSQNYYCHQNQSQNYYY 1107
              +LS+ +      S+  +   NL+++ +         + R  L  + +   +   + + 
Sbjct: 15   DEDLSRLHTERAMFSECDFSGVNLAESQHRGSAFRNCTFERTTLWHSTFAQCSMLGSVFV 74

Query: 1108 HQNQSQNYYYHQNQSQKYYYHQNLSQNYYYHQNLSQNYYCHQNQSQNYYYHQNQSQKYYY 1167
                        + +       +L         L +      +  +              
Sbjct: 75   ACRLRPLTLDDVDFTLAVLGGNDLRGLNLTGCRLRETSLVDTDLRKCVLRGA-----DLS 129

Query: 1168 HQNLSQNCYYHQN 1180
                +       +
Sbjct: 130  GARTTGARLDDAD 142

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]} Length = 353

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

 Score = 49.4 bits (116), Expect = 1e-06
 Identities = 20/214 (9%), Positives = 47/214 (21%), Gaps = 6/214 (2%)

Query: 1007 HQNLSQNYYYHQNLSLKYYCRRNLSQNYYCHQNQSPNNYYYHLNLSQNYYFHQNQSQNYY 1066
               +  N     +          +S N      +  N+ +  +    N    +       
Sbjct: 82   SLLVDNNNLKALSDLPPLLEYLGVSNNQLEKLPELQNSSFLKIIDVDNNSLKKLPDLPPS 141

Query: 1067 YHQNLSQNYYYHQNLSLKYYCRRNLSQNYYCHQNQSQNYYYHQNQSQNYYYHQNQSQKYY 1126
                 + N    +   L+                +  +                +  +  
Sbjct: 142  LEFIAAGNNQLEELPELQNLPFLTAIYADNNSLKKLPDLPLSLESIVAGNNILEELPELQ 201

Query: 1127 YHQNLSQNYYYHQNLSQNYYCHQNQSQNYYYHQNQ-----SQKYYYHQNLSQNCYYHQNR 1181
                L+  Y  +  L        +                  +     ++S+N +   + 
Sbjct: 202  NLPFLTTIYADNNLLKTLPDLPPSLEALNVRDNYLTDLPELPQSLTFLDVSENIFSGLSE 261

Query: 1182 SQNYYYHQNLSQNYYYHQNQSQKNYYYHLNLSQN 1215
                 Y+ N S N          +    LN+S N
Sbjct: 262  LPPNLYYLNASSNEIRSLCDLPPSLE-ELNVSNN 294

>d2h6fa1 a.118.6.1 (A:55-369) Protein farnesyltransferase alpha-subunit {Human (Homo sapiens) [TaxId: 9606]} Length = 315

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Protein prenylyltransferase
family: Protein prenylyltransferase
domain: Protein farnesyltransferase alpha-subunit
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 46.5 bits (109), Expect = 1e-05
 Identities = 36/291 (12%), Positives = 75/291 (25%), Gaps = 24/291 (8%)

Query: 957  IPPPPPVLNPPNSELVYKDKYTGVGGYFGAVPEIGQNYYFHQNQSQN--YYYHQNLSQNY 1014
             P P      P  +++Y DK+  V  YF AV            +S+         +  N 
Sbjct: 22   DPVPQNDGPNPVVQIIYSDKFRDVYDYFRAV-------LQRDERSERAFKLTRDAIELNA 74

Query: 1015 YYHQNLSLKYYCRRNLSQNYYCHQNQSPNNYYYHLNLSQNYYFHQNQSQNYYYHQNLSQN 1074
              +     +    ++L ++ +   N             Q ++  +   +         + 
Sbjct: 75   ANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQPKNYQVWHHRRVLVEWLRDPSQELEF 134

Query: 1075 YYYHQNLSLKYYCRRNLSQNYYCHQNQSQ--NYYYHQNQSQNYYYHQNQSQKYYYHQNLS 1132
                 N   K Y      Q              Y  Q   ++   +   +Q+Y+   N +
Sbjct: 135  IADILNQDAKNYHAWQHRQWVIQEFKLWDNELQYVDQLLKEDVRNNSVWNQRYFVISNTT 194

Query: 1133 QNYYYHQNLSQNYYCHQNQSQNYYYHQNQSQKYYYHQNLSQNCYYH--------QNRSQN 1184
                      +  Y  +      +     +      Q+   + Y +        Q    +
Sbjct: 195  GYNDRAVLEREVQYTLEMIKLVPHNESAWNYLKGILQDRGLSKYPNLLNQLLDLQPSHSS 254

Query: 1185 YYYHQNLSQNYYYHQNQSQKNYYYHLNLSQNYYY-----HQNLSQNYYYHQ 1230
             Y    L   Y         N    LN +             + + Y+ + 
Sbjct: 255  PYLIAFLVDIYEDMLENQCDNKEDILNKALELCEILAKEKDTIRKEYWRYI 305

>d2dtge6 g.3.9.1 (E:157-311) Insulin receptor {Human (Homo sapiens) [TaxId: 9606]} Length = 155

class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: Growth factor receptor domain
family: Growth factor receptor domain
domain: Insulin receptor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 44.3 bits (103), Expect = 2e-05
 Identities = 15/143 (10%), Positives = 33/143 (23%), Gaps = 19/143 (13%)

Query: 1026 CRRNLSQNYYCHQNQS-----PNNYYYHLNLSQNYYFHQNQSQNYYYHQNLSQNYYYHQN 1080
               N      C  +       P     H   ++    H     N     + ++       
Sbjct: 16   TVINGQFVERCWTHSHCQKVCPTICKSHGCTAEGLCCHSECLGNCSQPDDPTKCV----- 70

Query: 1081 LSLKYYCRRNLSQNYYCHQNQSQNYYYHQNQSQNYYYHQNQSQKYYYHQNLSQNYYYHQN 1140
                    RN   +  C +     YY+ Q+     +           +      + Y  +
Sbjct: 71   ------ACRNFYLDGRCVETCPPPYYHFQDWRCVNFSFCQDLHHKCKNSRRQGCHQYVIH 124

Query: 1141 LSQNYYCHQNQSQNYYYHQNQSQ 1163
             ++   C       Y  + +   
Sbjct: 125  NNK---CIPECPSGYTMNSSNLL 144

>d2dtge6 g.3.9.1 (E:157-311) Insulin receptor {Human (Homo sapiens) [TaxId: 9606]} Length = 155

class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: Growth factor receptor domain
family: Growth factor receptor domain
domain: Insulin receptor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 43.9 bits (102), Expect = 2e-05
 Identities = 15/143 (10%), Positives = 31/143 (21%), Gaps = 12/143 (8%)

Query: 1097 CHQNQSQNYYYHQNQSQNYYYHQNQSQKYYYHQNLSQNYYYHQNLSQNYYCHQNQSQNYY 1156
               N          Q     +  +  Q     +        H   ++   CH     N  
Sbjct: 9    GKTNCPATVI--NGQFVERCWTHSHCQ-----KVCPTICKSHGCTAEGLCCHSECLGNCS 61

Query: 1157 YHQNQSQKYYYHQNLSQNCYYHQNRSQNYYYHQNLSQNYYYHQNQSQKNYYYHLNLSQNY 1216
               + ++                     Y++      N+ + Q+   K           Y
Sbjct: 62   QPDDPTKCVACRNFYLDGRCVETCPPPYYHFQDWRCVNFSFCQDLHHKCKNSRRQGCHQY 121

Query: 1217 YYHQNL-----SQNYYYHQNSFT 1234
              H N         Y  + ++  
Sbjct: 122  VIHNNKCIPECPSGYTMNSSNLL 144

>d2dtge6 g.3.9.1 (E:157-311) Insulin receptor {Human (Homo sapiens) [TaxId: 9606]} Length = 155

class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: Growth factor receptor domain
family: Growth factor receptor domain
domain: Insulin receptor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 37.0 bits (84), Expect = 0.004
 Identities = 12/132 (9%), Positives = 36/132 (27%), Gaps = 14/132 (10%)

Query: 1064 NYYYHQNLSQNYYYHQNLSLKYYCRRNLSQNYYCHQNQSQNYYYHQNQSQ----NYYYHQ 1119
            N  + +    + +  +            ++   CH     N     + ++      +Y  
Sbjct: 19   NGQFVERCWTHSHCQKVCPTICKSHGCTAEGLCCHSECLGNCSQPDDPTKCVACRNFYLD 78

Query: 1120 NQSQKYYYHQNLSQNYYYHQNLSQNYYCHQNQSQNYYYHQNQSQKYYYHQNLSQN-CYYH 1178
             +       +     YY+ Q+              ++  +N  ++  +   +  N C   
Sbjct: 79   GR-----CVETCPPPYYHFQD--WRCVNFSFCQDLHHKCKNSRRQGCHQYVIHNNKCI-- 129

Query: 1179 QNRSQNYYYHQN 1190
                  Y  + +
Sbjct: 130  PECPSGYTMNSS 141

>d2j8ka1 b.80.8.1 (A:1-175) NP275-NP276 {Nostoc punctiforme [TaxId: 272131]} Length = 175

class: All beta proteins
fold: Single-stranded right-handed beta-helix
superfamily: Pentapeptide repeat-like
family: Pentapeptide repeats
domain: NP275-NP276
species: Nostoc punctiforme [TaxId: 272131]

 Score = 44.1 bits (103), Expect = 2e-05
 Identities = 21/131 (16%), Positives = 33/131 (25%), Gaps = 5/131 (3%)

Query: 1068 HQNLSQNYYYHQNLSLKYYCRRNLSQNYYCHQNQSQNYYYHQNQSQNYYYHQNQSQKYYY 1127
              +L      + NLS        L +      N S+        +       N S+    
Sbjct: 19   IVDLRGAVLENINLSGAILHGAMLDEANLQQANLSRADLSGATLNGADLRGANLSKADLS 78

Query: 1128 -----HQNLSQNYYYHQNLSQNYYCHQNQSQNYYYHQNQSQKYYYHQNLSQNCYYHQNRS 1182
                 +  L         L+Q      N  Q    H N  +      NL        + +
Sbjct: 79   DAILDNAILEGAILDEAVLNQANLKAANLEQAILSHANIREADLSEANLEAADLSGADLA 138

Query: 1183 QNYYYHQNLSQ 1193
                +  NL Q
Sbjct: 139  IADLHQANLHQ 149

>d2j8ka1 b.80.8.1 (A:1-175) NP275-NP276 {Nostoc punctiforme [TaxId: 272131]} Length = 175

class: All beta proteins
fold: Single-stranded right-handed beta-helix
superfamily: Pentapeptide repeat-like
family: Pentapeptide repeats
domain: NP275-NP276
species: Nostoc punctiforme [TaxId: 272131]

 Score = 41.8 bits (97), Expect = 1e-04
 Identities = 20/140 (14%), Positives = 33/140 (23%), Gaps = 4/140 (2%)

Query: 1007 HQNLSQNYYYHQNLSLKYYCRRNLSQNYYCHQNQSPNNYYYHLNLSQNYYFHQNQSQNY- 1065
              +L      + NLS        L +      N S  +         +         +  
Sbjct: 19   IVDLRGAVLENINLSGAILHGAMLDEANLQQANLSRADLSGATLNGADLRGANLSKADLS 78

Query: 1066 ---YYHQNLSQNYYYHQNLSLKYYCRRNLSQNYYCHQNQSQNYYYHQNQSQNYYYHQNQS 1122
                 +  L         L+       NL Q    H N  +      N         + +
Sbjct: 79   DAILDNAILEGAILDEAVLNQANLKAANLEQAILSHANIREADLSEANLEAADLSGADLA 138

Query: 1123 QKYYYHQNLSQNYYYHQNLS 1142
                +  NL Q      NL+
Sbjct: 139  IADLHQANLHQAALERANLT 158

>d1n8yc3 g.3.9.1 (C:166-322) Protooncoprotein Her2 extracellular domain {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 157

class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: Growth factor receptor domain
family: Growth factor receptor domain
domain: Protooncoprotein Her2 extracellular domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 43.7 bits (101), Expect = 3e-05
 Identities = 11/144 (7%), Positives = 28/144 (19%), Gaps = 12/144 (8%)

Query: 1036 CHQNQSPNNYYYHLNLSQNYYFHQNQSQNYYYHQNLSQNYYYHQNLSLKYYCRRNLSQNY 1095
                Q           ++          +                 S    C        
Sbjct: 23   PEDCQILTGTICTSGCARCKGRLPTDCCHEQ-----CAAGCTGPKHSDCLACLHFNHSGI 77

Query: 1096 YCHQNQSQNYYYHQNQSQNYYYHQNQSQKYYYHQNLSQNYYYHQNLSQNYYCHQNQSQNY 1155
                       Y+ +  ++     N   +Y +  +      Y+   ++   C      N 
Sbjct: 78   CELHCP-ALVTYNTDTFES---MHNPEGRYTFGASCVTTCPYNYLSTEVGSCTLVCPPNN 133

Query: 1156 YYHQNQSQKYY---YHQNLSQNCY 1176
                 +          +  ++ CY
Sbjct: 134  QEVTAEDGTQRCEKCSKPCARVCY 157

>d1n8yc3 g.3.9.1 (C:166-322) Protooncoprotein Her2 extracellular domain {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 157

class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: Growth factor receptor domain
family: Growth factor receptor domain
domain: Protooncoprotein Her2 extracellular domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 37.1 bits (84), Expect = 0.004
 Identities = 7/129 (5%), Positives = 21/129 (16%), Gaps = 9/129 (6%)

Query: 1097 CHQNQSQNYYYHQNQSQNYYYHQNQSQKYYYHQNLSQNYYYHQNLSQNYYCHQNQSQNYY 1156
                Q        +              +           +   L+  ++ H    + + 
Sbjct: 23   PEDCQILTGTICTSGCARCKGRLPTDCCHEQCAAGCTGPKHSDCLACLHFNHSGICELHC 82

Query: 1157 YHQNQSQKYYYHQNLSQNCYYHQNRSQNYYYHQNLSQNYYYHQNQSQKNYYYHLNLSQNY 1216
                      Y+ +  ++ +  + R              Y                  N 
Sbjct: 83   PAL-----VTYNTDTFESMHNPEGRYTFGASCVTTCPYNYLSTEVGSCTLVC----PPNN 133

Query: 1217 YYHQNLSQN 1225
                     
Sbjct: 134  QEVTAEDGT 142

>d1xnfa_ a.118.8.1 (A:) Lipoprotein NlpI {Escherichia coli [TaxId: 562]} Length = 259

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Lipoprotein NlpI
species: Escherichia coli [TaxId: 562]

 Score = 44.8 bits (104), Expect = 3e-05
 Identities = 18/208 (8%), Positives = 52/208 (25%), Gaps = 5/208 (2%)

Query: 1013 NYYYHQNLSLKYYCRRNLSQNYY-CHQNQSPNNYYYHLNLSQNYYFHQNQSQNYYYHQNL 1071
               Y + +       R L++N +       P+       L        N    Y    ++
Sbjct: 38   QLLYERGVLYDSLGLRALARNDFSQALAIRPDMPEVFNYLGIYLTQAGNFDAAYEAFDSV 97

Query: 1072 SQNYYYHQNLSLKYYCRRNLSQNYYCHQNQSQNYYYHQNQSQNYYYHQNQSQKYYYHQNL 1131
             +    +    L               Q+    +Y               +++    +  
Sbjct: 98   LELDPTYNYAHLNRGIALYYGGRDKLAQDDLLAFYQDDPNDPFRSLWLYLAEQKLDEKQA 157

Query: 1132 SQNY-YYHQNLSQNYYCHQNQSQNYYYHQNQSQKYYYHQNLSQNCYYHQNRSQNYYYHQN 1190
             +    + +   +  +              Q+       + + N    ++ S+  +    
Sbjct: 158  KEVLKQHFEKSDKEQWGWNIVEFYLGNISEQTLMERLKADATDNTSLAEHLSETNF---Y 214

Query: 1191 LSQNYYYHQNQSQKNYYYHLNLSQNYYY 1218
            L + Y    +       + L ++ N + 
Sbjct: 215  LGKYYLSLGDLDSATALFKLAVANNVHN 242

>d1hupa1 d.169.1.1 (A:112-228) Mannose-binding protein A, C-lectin domain {Human (Homo sapiens) [TaxId: 9606]} Length = 117

class: Alpha and beta proteins (a+b)
fold: C-type lectin-like
superfamily: C-type lectin-like
family: C-type lectin domain
domain: Mannose-binding protein A, C-lectin domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 41.6 bits (96), Expect = 6e-05
 Identities = 7/113 (6%), Positives = 27/113 (23%), Gaps = 8/113 (7%)

Query: 1055 YYFHQNQSQNYYYHQNLSQNYYYHQNLSLKYYCRRNLSQNYYCHQNQSQNYYYHQNQSQN 1114
            ++    +   +   + L   +             RN ++N        +  +      + 
Sbjct: 7    FFLTNGEIMTFEKVKALCVKFQAS------VATPRNAAENGAIQNLIKEEAFLGITDEKT 60

Query: 1115 YYYHQNQSQKYYYHQNLSQNYYYHQNLSQNYYCHQNQSQNYYYHQNQSQKYYY 1167
                 + +     + N ++    +     +  C        +     S  +  
Sbjct: 61   EGQFVDLTGNRLTYTNWNEGEPNNAG--SDEDCVLLLKNGQWNDVPCSTSHLA 111

>d1hupa1 d.169.1.1 (A:112-228) Mannose-binding protein A, C-lectin domain {Human (Homo sapiens) [TaxId: 9606]} Length = 117

class: Alpha and beta proteins (a+b)
fold: C-type lectin-like
superfamily: C-type lectin-like
family: C-type lectin domain
domain: Mannose-binding protein A, C-lectin domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 37.7 bits (86), Expect = 0.001
 Identities = 10/129 (7%), Positives = 31/129 (24%), Gaps = 19/129 (14%)

Query: 989  EIGQNYYFHQNQSQNYYYHQNLSQNYYYHQNLSLKYYCRRNLSQNYYCHQNQSPNNYYYH 1048
            ++G  ++    +   +   +                 C +   Q        +  N    
Sbjct: 2    QVGNKFFLTNGEIMTFEKVKA---------------LCVKF--QASVATPRNAAENGAIQ 44

Query: 1049 LNLSQNYYFHQNQSQNYYYHQNLSQNYYYHQNLSLKYYCRRNLSQNYYCHQNQSQNYYYH 1108
              + +  +      +      +L+ N   + N +       N   +  C        +  
Sbjct: 45   NLIKEEAFLGITDEKTEGQFVDLTGNRLTYTNWN--EGEPNNAGSDEDCVLLLKNGQWND 102

Query: 1109 QNQSQNYYY 1117
               S ++  
Sbjct: 103  VPCSTSHLA 111

>d1hupa1 d.169.1.1 (A:112-228) Mannose-binding protein A, C-lectin domain {Human (Homo sapiens) [TaxId: 9606]} Length = 117

class: Alpha and beta proteins (a+b)
fold: C-type lectin-like
superfamily: C-type lectin-like
family: C-type lectin domain
domain: Mannose-binding protein A, C-lectin domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 37.3 bits (85), Expect = 0.002
 Identities = 7/110 (6%), Positives = 29/110 (26%), Gaps = 7/110 (6%)

Query: 1123 QKYYYHQNLSQNYYYHQNLSQNYYCH----QNQSQNYYYHQNQSQKYYYHQNLSQNCYYH 1178
             K++        +   + L   +       +N ++N        ++ +      +     
Sbjct: 5    NKFFLTNGEIMTFEKVKALCVKFQASVATPRNAAENGAIQNLIKEEAFLGITDEKTEGQF 64

Query: 1179 QNRSQNYYYHQNLSQNYYYHQNQSQKNYYYHLNLSQNYYYHQNLSQNYYY 1228
             + + N   + N ++    +    +             +     S ++  
Sbjct: 65   VDLTGNRLTYTNWNEGEPNNAGSDEDCVLLL---KNGQWNDVPCSTSHLA 111

>d1aeca_ d.3.1.1 (A:) Actinidin {Chinese gooseberry or kiwifruit (Actinidia chinensis) [TaxId: 3625]} Length = 218

class: Alpha and beta proteins (a+b)
fold: Cysteine proteinases
superfamily: Cysteine proteinases
family: Papain-like
domain: Actinidin
species: Chinese gooseberry or kiwifruit (Actinidia chinensis) [TaxId: 3625]

 Score = 43.1 bits (100), Expect = 7e-05
 Identities = 16/150 (10%), Positives = 34/150 (22%), Gaps = 3/150 (2%)

Query: 1085 YYCRRNLSQNYYCHQNQSQNYYYHQNQSQNYYYHQNQSQKYYYHQNLSQNYYYHQNLSQN 1144
                          Q           +  N  Y  +  Q    +  ++    Y       
Sbjct: 37   INKIVTGVLISLSEQELIDCGRTQNTRGCNGGYITDGFQFIINNGGINTEENYPYTAQDG 96

Query: 1145 YYCHQNQSQNYYYHQNQSQKYYYHQNLSQNCYYHQNRSQNYYYHQNLSQNYYYHQNQSQK 1204
                  Q++ Y          Y ++   Q    +Q  S       +      Y       
Sbjct: 97   ECNVDLQNEKYVTIDTYENVPYNNEWALQTAVTYQPVSVALDAAGD--AFKQYSSGIFTG 154

Query: 1205 NYYYHLNLSQN-YYYHQNLSQNYYYHQNSF 1233
                 ++ +     Y      +Y+  +NS+
Sbjct: 155  PCGTAIDHAVTIVGYGTEGGIDYWIVKNSW 184

>d1igra3 g.3.9.1 (A:150-299) Type 1 insulin-like growth factor receptor Cys-rich domain {Human (Homo sapiens) [TaxId: 9606]} Length = 150

class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: Growth factor receptor domain
family: Growth factor receptor domain
domain: Type 1 insulin-like growth factor receptor Cys-rich domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 42.3 bits (98), Expect = 7e-05
 Identities = 13/139 (9%), Positives = 34/139 (24%), Gaps = 8/139 (5%)

Query: 1059 QNQSQNYYYHQNLSQNYYYHQNLSLKYYCRRNLSQNYYCHQNQSQNYYYHQNQSQNYYYH 1118
            + +        N   NY        +  C     +      N+  +     + S      
Sbjct: 8    EEKPMCEKTTINNEYNYRCWTTNRCQKMCPSTCGKRACTENNECCHPECLGSCSAPDNDT 67

Query: 1119 QNQSQKYYYHQN---LSQNYYYHQNLSQNYYCHQNQSQNYYYHQNQSQKYYYHQNLSQNC 1175
               + ++YY+      +     ++            +       + S+ +  H      C
Sbjct: 68   ACVACRHYYYAGVCVPACPPNTYRFEGWRCVDRDFCANILSAESSDSEGFVIHDG---EC 124

Query: 1176 YYHQNRSQNYYYHQNLSQN 1194
               Q     +  + + S  
Sbjct: 125  M--QECPSGFIRNGSQSMY 141

>d1igra3 g.3.9.1 (A:150-299) Type 1 insulin-like growth factor receptor Cys-rich domain {Human (Homo sapiens) [TaxId: 9606]} Length = 150

class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: Growth factor receptor domain
family: Growth factor receptor domain
domain: Type 1 insulin-like growth factor receptor Cys-rich domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 38.1 bits (87), Expect = 0.002
 Identities = 15/147 (10%), Positives = 36/147 (24%), Gaps = 16/147 (10%)

Query: 1026 CRRNLSQNYYCHQNQSPNNYYYHLNLSQNYYFHQNQSQNYYYHQNLSQNYYYHQNLSLKY 1085
            C   + +   C +    N Y        NY                 +      N     
Sbjct: 3    CPGTMEEKPMCEKTTINNEY--------NYRCWTTNRCQKMCPSTCGKRACTENNECCHP 54

Query: 1086 YCRRNLSQNYYCHQNQSQNYYYHQNQ---SQNYYYHQNQSQKYYYHQNLSQNYYYHQNLS 1142
             C  + S         +  +YY+      +     ++ +  +       +       + S
Sbjct: 55   ECLGSCSAPDNDTACVACRHYYYAGVCVPACPPNTYRFEGWRCVDRDFCANILSAESSDS 114

Query: 1143 QNYYCHQNQ-----SQNYYYHQNQSQK 1164
            + +  H  +        +  + +QS  
Sbjct: 115  EGFVIHDGECMQECPSGFIRNGSQSMY 141

>d1m6ba3 g.3.9.1 (A:166-310) Receptor protein-tyrosine kinase Erbb-3 Cys-rich domains {Human (Homo sapiens) [TaxId: 9606]} Length = 145

class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: Growth factor receptor domain
family: Growth factor receptor domain
domain: Receptor protein-tyrosine kinase Erbb-3 Cys-rich domains
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 41.3 bits (95), Expect = 1e-04
 Identities = 16/121 (13%), Positives = 27/121 (22%), Gaps = 7/121 (5%)

Query: 1119 QNQSQKYYYHQNLSQNYYYHQNLSQNYYCHQNQSQNYYYHQNQSQKYYYHQNLSQNCYYH 1178
                Q         Q   +    + N  CH   +      Q+       H N S  C   
Sbjct: 15   SEDCQTLTKTICAPQCNGHCFGPNPNQCCHDECAGGCSGPQDTDCFACRHFNDSGACV-- 72

Query: 1179 QNRSQNYYYHQNLSQNYYYHQNQSQKNYYYHLNLSQNYYYHQNL-----SQNYYYHQNSF 1233
                Q   Y++   Q       + Q       +   N+   Q         +      + 
Sbjct: 73   PRCPQPLVYNKLTFQLEPNPHTKYQYGGVCVASCPHNFVVDQTSCVRACPPDKMEVDKNG 132

Query: 1234 T 1234
             
Sbjct: 133  L 133

>d1m6ba3 g.3.9.1 (A:166-310) Receptor protein-tyrosine kinase Erbb-3 Cys-rich domains {Human (Homo sapiens) [TaxId: 9606]} Length = 145

class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: Growth factor receptor domain
family: Growth factor receptor domain
domain: Receptor protein-tyrosine kinase Erbb-3 Cys-rich domains
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 40.9 bits (94), Expect = 2e-04
 Identities = 8/119 (6%), Positives = 23/119 (19%), Gaps = 11/119 (9%)

Query: 1093 QNYYCHQNQSQNYYYHQNQSQNYYYHQNQSQKYYYHQNLSQNYYYHQNLSQNYYCHQNQS 1152
                C    + + +        +                  + +  ++ + +  C     
Sbjct: 22   TKTICAPQCNGHCFGPNPNQCCHDECAGG-----CSGPQDTDCFACRHFNDSGACVPRCP 76

Query: 1153 QNYYYHQNQSQKYYYHQNLSQNCYYHQNRSQNYYYHQNLS------QNYYYHQNQSQKN 1205
            Q   Y++   Q         Q          + +     S       +         K 
Sbjct: 77   QPLVYNKLTFQLEPNPHTKYQYGGVCVASCPHNFVVDQTSCVRACPPDKMEVDKNGLKM 135

>d1m6ba3 g.3.9.1 (A:166-310) Receptor protein-tyrosine kinase Erbb-3 Cys-rich domains {Human (Homo sapiens) [TaxId: 9606]} Length = 145

class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: Growth factor receptor domain
family: Growth factor receptor domain
domain: Receptor protein-tyrosine kinase Erbb-3 Cys-rich domains
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 38.2 bits (87), Expect = 0.002
 Identities = 10/129 (7%), Positives = 26/129 (20%), Gaps = 9/129 (6%)

Query: 1036 CHQNQSPNNYYYHLNLSQNYYFHQNQSQNYYYHQNLSQNYYYHQNLSLKYYCRRNLSQNY 1095
                Q+          + + +        +                    +  R+ + + 
Sbjct: 15   SEDCQTLTKTICAPQCNGHCFGPNPNQCCHDECAGG-----CSGPQDTDCFACRHFNDSG 69

Query: 1096 YCHQNQSQNYYYHQNQSQNYYYHQNQSQKYYYHQNLSQNYYYHQNLSQNYYCHQNQSQNY 1155
             C     Q   Y++   Q       + Q          + +     S    C +    + 
Sbjct: 70   ACVPRCPQPLVYNKLTFQLEPNPHTKYQYGGVCVASCPHNFVVDQTS----CVRACPPDK 125

Query: 1156 YYHQNQSQK 1164
                    K
Sbjct: 126  MEVDKNGLK 134

>d1rdl1_ d.169.1.1 (1:) Mannose-binding protein A, C-lectin domain {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 111

class: Alpha and beta proteins (a+b)
fold: C-type lectin-like
superfamily: C-type lectin-like
family: C-type lectin domain
domain: Mannose-binding protein A, C-lectin domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 39.7 bits (91), Expect = 2e-04
 Identities = 6/110 (5%), Positives = 18/110 (16%), Gaps = 12/110 (10%)

Query: 1065 YYYHQNLSQNYYYHQNLSLKYYCRRN-------LSQNYYCHQNQSQNYYYHQNQSQNYYY 1117
            Y+            +       C           +                   +     
Sbjct: 2    YFMSSVRRMPLNRAKA-----LCSELQGTVATPRNAEENRAIQNVAKDVAFLGITDQRTE 56

Query: 1118 HQNQSQKYYYHQNLSQNYYYHQNLSQNYYCHQNQSQNYYYHQNQSQKYYY 1167
            +  +       +  + N     N+     C    +   +     S  +  
Sbjct: 57   NVFEDLTGNRVRYTNWNEGEPNNVGSGENCVVLLTNGKWNDVPCSDSFLV 106

>d1qg8a_ c.68.1.1 (A:) Spore coat polysaccharide biosynthesis protein SpsA {Bacillus subtilis [TaxId: 1423]} Length = 255

class: Alpha and beta proteins (a/b)
fold: Nucleotide-diphospho-sugar transferases
superfamily: Nucleotide-diphospho-sugar transferases
family: Spore coat polysaccharide biosynthesis protein SpsA
domain: Spore coat polysaccharide biosynthesis protein SpsA
species: Bacillus subtilis [TaxId: 1423]

 Score = 42.0 bits (97), Expect = 2e-04
 Identities = 11/187 (5%), Positives = 41/187 (21%), Gaps = 9/187 (4%)

Query: 1049 LNLSQNYYFHQNQSQNYYYHQNLSQNYYYHQNLSLKYYCRRNLSQNYYCHQNQSQNYYYH 1108
            LN+ + +               + +     +  +L           Y  +      Y   
Sbjct: 45   LNVIRPFLNDNRVRFYQSDISGVKERTEKTRYAALINQAIEMAEGEYITYATDDNIYMPD 104

Query: 1109 QNQSQNYYYHQNQSQKYYYHQNLSQNYYYHQNLSQNYYCHQNQSQNYYYHQNQSQKYYYH 1168
            +          +  +   Y  + + +   ++++ +       Q               + 
Sbjct: 105  RLLKMVRELDTHPEKAVIYSASKTYHLNENRDIVKETVRPAAQVTWNAPCAIDHCSVMHR 164

Query: 1169 QNLSQNCYYHQNRSQNYYYHQNLSQNYYYHQNQSQKNYYYHLNLSQNYYYHQNLSQNYYY 1228
             ++ +          +         +  +    +    +Y L+  +            Y 
Sbjct: 165  YSVLEKVKEKFGSYWDESPAFYRIGDARFFWRVNHFYPFYPLD--EELDL-------NYI 215

Query: 1229 HQNSFTS 1235
               S   
Sbjct: 216  TDQSIHF 222

>d1moxa3 g.3.9.1 (A:163-311) EGF receptor Cys-rich domains {Human (Homo sapiens) [TaxId: 9606]} Length = 149

class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: Growth factor receptor domain
family: Growth factor receptor domain
domain: EGF receptor Cys-rich domains
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 40.9 bits (94), Expect = 2e-04
 Identities = 9/119 (7%), Positives = 19/119 (15%), Gaps = 12/119 (10%)

Query: 1093 QNYYCHQNQSQNYYYHQNQSQNYYYHQNQSQKYYYHQNLSQNYYYHQNLSQNYYCHQNQS 1152
                C Q  S            +               L    +  +       C     
Sbjct: 25   TKIICAQQCSGRCRGKSPSDCCHNQCAAGCTGPRESDCLVCRKFRDEA-----TCKDTCP 79

Query: 1153 QNYYYHQNQSQKYYYHQNLSQNCYYHQNRSQNYYYHQNLSQ-------NYYYHQNQSQK 1204
                Y+    Q     +           +    Y   +          + Y  +    +
Sbjct: 80   PLMLYNPTTYQMDVNPEGKYSFGATCVKKCPRNYVVTDHGSCVRACGADSYEMEEDGVR 138

>d1moxa3 g.3.9.1 (A:163-311) EGF receptor Cys-rich domains {Human (Homo sapiens) [TaxId: 9606]} Length = 149

class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: Growth factor receptor domain
family: Growth factor receptor domain
domain: EGF receptor Cys-rich domains
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 40.1 bits (92), Expect = 3e-04
 Identities = 7/135 (5%), Positives = 19/135 (14%), Gaps = 16/135 (11%)

Query: 1097 CHQNQSQNYYYHQNQSQ-----NYYYHQNQSQKYYYHQNLSQNYYYHQNLSQNYYCHQNQ 1151
            C  +      +   +            Q  S +          +                
Sbjct: 4    CDPSCPNGSCWGAGEENCQKLTKIICAQQCSGRCRGKSPSDCCHNQCAAGCTGPRESDCL 63

Query: 1152 SQNYYYHQNQ-----SQKYYYHQNLSQNCYYHQNRSQNYYYHQNLSQNYYYHQNQSQ--- 1203
                +  +            Y+    Q     + +              Y   +      
Sbjct: 64   VCRKFRDEATCKDTCPPLMLYNPTTYQMDVNPEGKYSFGATCVKKCPRNYVVTDHGSCVR 123

Query: 1204 ---KNYYYHLNLSQN 1215
                + Y        
Sbjct: 124  ACGADSYEMEEDGVR 138

>d1moxa3 g.3.9.1 (A:163-311) EGF receptor Cys-rich domains {Human (Homo sapiens) [TaxId: 9606]} Length = 149

class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: Growth factor receptor domain
family: Growth factor receptor domain
domain: EGF receptor Cys-rich domains
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 39.7 bits (91), Expect = 5e-04
 Identities = 12/139 (8%), Positives = 28/139 (20%), Gaps = 8/139 (5%)

Query: 1026 CRRNLSQNYYCHQNQSPNNYYYHLNLSQNYYFHQNQSQNYYYHQNLSQNYYYHQNLSLKY 1085
            C             Q           S           +  ++Q  +      ++  L  
Sbjct: 8    CPNGSCWGAGEENCQKLTKIICAQQCSGRCR--GKSPSDCCHNQCAAGCTGPRESDCLV- 64

Query: 1086 YCRRNLSQNYYCHQNQSQNYYYHQNQSQNYYYHQNQSQKYYYHQNLSQNYYYHQNLSQNY 1145
             CR+   +             Y+    Q     + +              Y   +     
Sbjct: 65   -CRKFRDEATCKDTCP-PLMLYNPTTYQMDVNPEGKYSFGATCVKKCPRNYVVTDHGS-- 120

Query: 1146 YCHQNQSQNYYYHQNQSQK 1164
             C +    + Y  +    +
Sbjct: 121  -CVRACGADSYEMEEDGVR 138

>d1moxa3 g.3.9.1 (A:163-311) EGF receptor Cys-rich domains {Human (Homo sapiens) [TaxId: 9606]} Length = 149

class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: Growth factor receptor domain
family: Growth factor receptor domain
domain: EGF receptor Cys-rich domains
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 38.6 bits (88), Expect = 0.001
 Identities = 12/117 (10%), Positives = 24/117 (20%), Gaps = 10/117 (8%)

Query: 1008 QNLSQNYYYHQNLSLKY---YCRRNLSQNYYCHQNQSPNNYYYHLNLSQNYYFHQNQSQN 1064
            Q L++     Q               +Q          ++                    
Sbjct: 22   QKLTKIICAQQCSGRCRGKSPSDCCHNQCAAGCTGPRESDCLVCRKFRDEATCKDTCPPL 81

Query: 1065 YYYHQNLSQNYYYHQN-LSLKYYCRRNLSQNYY------CHQNQSQNYYYHQNQSQN 1114
              Y+    Q     +   S    C +   +NY       C +    + Y  +     
Sbjct: 82   MLYNPTTYQMDVNPEGKYSFGATCVKKCPRNYVVTDHGSCVRACGADSYEMEEDGVR 138

>d1moxa3 g.3.9.1 (A:163-311) EGF receptor Cys-rich domains {Human (Homo sapiens) [TaxId: 9606]} Length = 149

class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: Growth factor receptor domain
family: Growth factor receptor domain
domain: EGF receptor Cys-rich domains
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 37.8 bits (86), Expect = 0.002
 Identities = 11/126 (8%), Positives = 26/126 (20%), Gaps = 9/126 (7%)

Query: 1069 QNLSQNYYYHQNLSLKYYCRRNLSQNYYCHQNQSQNYYYHQNQSQNYYYHQNQSQKYYYH 1128
            Q L++     Q            S +  CH   +      +                   
Sbjct: 22   QKLTKIICAQQCSGRCRGK----SPSDCCHNQCAAGCTGPRESDCLVCRKFRDEATCK-- 75

Query: 1129 QNLSQNYYYHQNLSQNYYCHQNQSQNYYYHQNQSQKYYYHQNLSQNCYYHQNRSQNYYYH 1188
                    Y+    Q     + +         +  + Y   +   +C   +    + Y  
Sbjct: 76   DTCPPLMLYNPTTYQMDVNPEGKYSFGATCVKKCPRNYVVTD-HGSCV--RACGADSYEM 132

Query: 1189 QNLSQN 1194
            +     
Sbjct: 133  EEDGVR 138

>d1olta_ c.1.28.2 (A:) Oxygen-independent coproporphyrinogen III oxidase HemN {Escherichia coli [TaxId: 562]} Length = 441

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: Radical SAM enzymes
family: Oxygen-independent coproporphyrinogen III oxidase HemN
domain: Oxygen-independent coproporphyrinogen III oxidase HemN
species: Escherichia coli [TaxId: 562]

 Score = 42.7 bits (99), Expect = 3e-04
 Identities = 14/201 (6%), Positives = 49/201 (24%), Gaps = 7/201 (3%)

Query: 1032 QNYYCHQNQSPNNYYYHLNLSQNYYFHQNQSQNYYYHQNLSQNYYYHQNLSLKYYCRRNL 1091
            +              ++        F++   +     Q+    +    +     +   N+
Sbjct: 146  REIELDVLDHLRAEGFNRLSMGVQDFNKEVQRLVNREQDEEFIFALLNHAREIGFTSTNI 205

Query: 1092 SQNYYCHQNQSQNYYYHQNQSQNYYYHQNQSQKYYY--HQNLSQNYYYHQNLSQNYYCHQ 1149
               Y   +   +++ +   +       +     Y +      +Q      +L        
Sbjct: 206  DLIYGLPKQTPESFAFTLKRVAELNPDRLSVFNYAHLPTIFAAQRKIKDADLPSPQQKLD 265

Query: 1150 NQSQNYYYHQNQSQKYYYHQNLSQNCYYHQNRSQNYYYHQNLSQNYYYHQNQSQKNYYYH 1209
               +   +      ++    + ++         +    H+N  Q Y    +         
Sbjct: 266  ILQETIAFLTQSGYQFIGMDHFARPDDELAVAQREGVLHRNF-QGYTTQGDT----DLLG 320

Query: 1210 LNLSQNYYYHQNLSQNYYYHQ 1230
            + +S         +QN    +
Sbjct: 321  MGVSAISMIGDCYAQNQKELK 341

>d1olta_ c.1.28.2 (A:) Oxygen-independent coproporphyrinogen III oxidase HemN {Escherichia coli [TaxId: 562]} Length = 441

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: Radical SAM enzymes
family: Oxygen-independent coproporphyrinogen III oxidase HemN
domain: Oxygen-independent coproporphyrinogen III oxidase HemN
species: Escherichia coli [TaxId: 562]

 Score = 40.8 bits (94), Expect = 0.001
 Identities = 13/204 (6%), Positives = 34/204 (16%), Gaps = 10/204 (4%)

Query: 989  EIGQNYYFHQNQSQNYYYHQNLSQNYYYHQNLSLKYYCRRNLSQNYYCHQNQSPNNYYYH 1048
              G N      Q  N    + +++        +L  + R     +               
Sbjct: 158  AEGFNRLSMGVQDFNKEVQRLVNREQDEEFIFALLNHAREIGFTSTNIDLIYGLPKQTPE 217

Query: 1049 LNLSQNYYFHQNQSQNYYYHQNLSQNYYYHQNLSLKYYCRRNLSQNYYCHQNQSQNYYYH 1108
                      +               Y +   +       ++        +         
Sbjct: 218  SFAFTLKRVAELNPDRLSVFN-----YAHLPTIFAAQRKIKDADLPSPQQKLDILQETIA 272

Query: 1109 Q-NQSQNYYYHQNQSQKYYYHQNLSQNYYYHQNLSQNYYCHQNQSQNYYYHQNQSQKYYY 1167
               QS   +   +   +      ++Q         Q Y        +             
Sbjct: 273  FLTQSGYQFIGMDHFARPDDELAVAQREGVLHRNFQGYTTQ----GDTDLLGMGVSAISM 328

Query: 1168 HQNLSQNCYYHQNRSQNYYYHQNL 1191
              +          +       Q  
Sbjct: 329  IGDCYAQNQKELKQYYQQVDEQGN 352

>d1v2da_ c.67.1.1 (A:) Glutamine aminotransferase {Thermus thermophilus [TaxId: 274]} Length = 368

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: AAT-like
domain: Glutamine aminotransferase
species: Thermus thermophilus [TaxId: 274]

 Score = 42.4 bits (98), Expect = 3e-04
 Identities = 15/259 (5%), Positives = 41/259 (15%), Gaps = 6/259 (2%)

Query: 957  IPPPPPVLNPPNSELVYKDKYTGVGGYFGAVPEIGQNYYFHQNQSQNYYYHQNLSQNYYY 1016
             PPPP +L      L  +D+Y    G       + + +                      
Sbjct: 37   NPPPPFLLEAVRRALGRQDQYAPPAGLPALREALAEEFAVEPESVVVTSGATEALYVLLQ 96

Query: 1017 HQNLSLKYYCRRNLSQNYYCHQNQSPNNYYYHLNLSQNYYFHQNQSQNYYYHQNLSQNYY 1076
                            + Y             + L       +                 
Sbjct: 97   SLVGPGDEVVVLEPFFDVYLPDAFLAGAKARLVRLDLTPEGFRLDLSALEKALTPRTRAL 156

Query: 1077 Y---HQNLSLKYYCR---RNLSQNYYCHQNQSQNYYYHQNQSQNYYYHQNQSQKYYYHQN 1130
                  N +   +       +++    H     +   +          + +         
Sbjct: 157  LLNTPMNPTGLVFGERELEAIARLARAHDLFLISDEVYDELYYGERPRRLREFAPERTFT 216

Query: 1131 LSQNYYYHQNLSQNYYCHQNQSQNYYYHQNQSQKYYYHQNLSQNCYYHQNRSQNYYYHQN 1190
            +       +             +         Q   +           +           
Sbjct: 217  VGSAGKRLEATGYRVGWIVGPKEFMPRLAGMRQWTSFSAPTPLQAGVAEALKLARREGFY 276

Query: 1191 LSQNYYYHQNQSQKNYYYH 1209
             +    Y + +        
Sbjct: 277  EALREGYRRRRDLLAGGLR 295

>d1me4a_ d.3.1.1 (A:) Cruzain {Trypanosoma cruzi [TaxId: 5693]} Length = 215

class: Alpha and beta proteins (a+b)
fold: Cysteine proteinases
superfamily: Cysteine proteinases
family: Papain-like
domain: Cruzain
species: Trypanosoma cruzi [TaxId: 5693]

 Score = 41.2 bits (95), Expect = 3e-04
 Identities = 11/146 (7%), Positives = 34/146 (23%), Gaps = 7/146 (4%)

Query: 1092 SQNYYCHQNQSQNYYYHQNQSQNYYYHQNQSQKYYYHQN----LSQNYYYHQNLSQNYYC 1147
                     Q        +   +     N  +      N       +Y Y      +  C
Sbjct: 42   GHPLTNLSEQMLVSCDKTDSGCSGGLMNNAFEWIVQENNGAVYTEDSYPYASGEGISPPC 101

Query: 1148 HQNQSQNYYYHQNQSQKYYYHQNLSQNCYYHQNRSQNYYYHQNLSQNYYYHQNQSQKNYY 1207
              +            +       ++     +   +        ++       +   +   
Sbjct: 102  TTSGHTVGATITGHVELPQDEAQIAAWLAVNGPVAVAVDASSWMTYTGGVMTSCVSEQLD 161

Query: 1208 YHLNLSQNYYYHQNLSQNYYYHQNSF 1233
            + + L     Y+ + +  Y+  +NS+
Sbjct: 162  HGVLL---VGYNDSAAVPYWIIKNSW 184

>d1o69a_ c.67.1.4 (A:) Aminotransferase homolog WlaK (PglE, Cj1121c) {Campylobacter jejuni [TaxId: 197]} Length = 374

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: GABA-aminotransferase-like
domain: Aminotransferase homolog WlaK (PglE, Cj1121c)
species: Campylobacter jejuni [TaxId: 197]

 Score = 41.9 bits (97), Expect = 3e-04
 Identities = 20/235 (8%), Positives = 55/235 (23%), Gaps = 24/235 (10%)

Query: 973  YKDKYTGVGGYFGAVPEIGQNYYFHQNQSQNYYYHQNLSQNYYYHQNLSLKYYCRRNLSQ 1032
            YK+K  G  G FG     G               ++   +   ++          +    
Sbjct: 153  YKNKALGTFGEFGVYSYNGNKIITTSGGGMLIGKNKEKIEKARFY--------STQAREN 204

Query: 1033 NYYCHQNQSPNNYYYHLNLSQNYYFHQNQSQNYYYHQNLSQNYYYHQNLSLKYYCRRNLS 1092
              +        NY            +   +      + L Q     + +   Y       
Sbjct: 205  CLHYEHLDYGYNYRLS---------NVLGAIGVAQMEVLEQRVLKKREIYEWYKEFLGEY 255

Query: 1093 QNYYCHQNQSQ-NYYYHQNQSQNYYYHQNQSQKYYYHQNLSQNYYYHQNLSQNYYCHQNQ 1151
             ++      S+ N +             N  QK       +   +   +       ++  
Sbjct: 256  FSFLDELENSRSNRWLSTALINFDKNELNACQKDINISQKNITLHPKISKLIEDLKNKQI 315

Query: 1152 SQNYYYHQNQSQKYYYHQNLSQNCYYHQNRSQNYYYHQNLSQNYYYHQNQSQKNY 1206
                 +    +Q+ +      +    + N +   ++ + +        ++     
Sbjct: 316  ETRPLWKAMHTQEVF------KGAKAYLNGNSELFFQKGICLPSGTAMSKDDVYE 364

>d1wmza_ d.169.1.1 (A:) Lectin CEL-I {Cucumaria echinata [TaxId: 40245]} Length = 140

class: Alpha and beta proteins (a+b)
fold: C-type lectin-like
superfamily: C-type lectin-like
family: C-type lectin domain
domain: Lectin CEL-I
species: Cucumaria echinata [TaxId: 40245]

 Score = 39.9 bits (91), Expect = 4e-04
 Identities = 9/134 (6%), Positives = 35/134 (26%), Gaps = 6/134 (4%)

Query: 1064 NYYYHQNLSQNYYYHQNLSLKYYCRRNLSQNYYCHQNQSQNYYYHQNQSQNYYYHQNQSQ 1123
            ++    +   + Y   N    +    +   +Y C     ++     + +    Y  N  +
Sbjct: 6    DWEAEGD---HCYRFFNTLTTWENAHHECVSYSCSTLNVRSDLVSVHSAAEQAYVFNYWR 62

Query: 1124 KYYYHQNLSQNYYYHQNLSQNYYCHQNQSQNYYYHQNQSQKYYYHQNLSQNCYYHQNRSQ 1183
                    +   +       N         +   +   +     + N +++    ++   
Sbjct: 63   GIDSQ---AGQLWIGLYDKYNEGDFIWTDGSKVGYTKWAGGQPDNWNNAEDYGQFRHTEG 119

Query: 1184 NYYYHQNLSQNYYY 1197
              +   + +    Y
Sbjct: 120  GAWNDNSAAAQAKY 133

>d1qhoa4 c.1.8.1 (A:1-407) Cyclodextrin glycosyltransferase {Bacillus stearothermophilus, maltogenic alpha-amylase [TaxId: 1422]} Length = 407

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: (Trans)glycosidases
family: Amylase, catalytic domain
domain: Cyclodextrin glycosyltransferase
species: Bacillus stearothermophilus, maltogenic alpha-amylase [TaxId: 1422]

 Score = 41.6 bits (96), Expect = 4e-04
 Identities = 17/229 (7%), Positives = 61/229 (26%), Gaps = 3/229 (1%)

Query: 1002 QNYYYHQNLSQNYYYHQNLSLKYYCRRNLSQNYYCHQNQSPNNYYYHLNLSQNYYFHQNQ 1061
             N  YH   ++++   +     +     L  + + +  +   ++  + + +         
Sbjct: 85   DNTGYHGYWTRDFKQIEEHFGNWTTFDTLVNDAHQNGIKVIVDFVPN-HSTPFKANDSTF 143

Query: 1062 SQNYYYHQNLSQNYYYHQNLSLKYYCRRNLSQNYYCHQNQSQNYYYHQNQSQNYYYHQNQ 1121
            ++    + N +    Y  + +  Y+       N+          +            Q  
Sbjct: 144  AEGGALYNNGTYMGNYFDDATKGYFHHNGDISNWDDRYEAQWKNFTDPAGFSLADLSQEN 203

Query: 1122 SQKYYYHQNLSQNYYYHQNLSQNYYCHQNQSQNYYYHQNQSQKYYYHQNLSQNCYYHQNR 1181
                 Y  + +     H            +  N  + ++ + K Y  +++     ++ + 
Sbjct: 204  GTIAQYLTDAAVQLVAHGA--DGLRIDAVKHFNSGFSKSLADKLYQKKDIFLVGEWYGDD 261

Query: 1182 SQNYYYHQNLSQNYYYHQNQSQKNYYYHLNLSQNYYYHQNLSQNYYYHQ 1230
                 + + +        N    +    +      +       N   +Q
Sbjct: 262  PGTANHLEKVRYANNSGVNVLDFDLNTVIRNVFGTFTQTMYDLNNMVNQ 310

>d1qhoa4 c.1.8.1 (A:1-407) Cyclodextrin glycosyltransferase {Bacillus stearothermophilus, maltogenic alpha-amylase [TaxId: 1422]} Length = 407

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: (Trans)glycosidases
family: Amylase, catalytic domain
domain: Cyclodextrin glycosyltransferase
species: Bacillus stearothermophilus, maltogenic alpha-amylase [TaxId: 1422]

 Score = 38.9 bits (89), Expect = 0.003
 Identities = 16/169 (9%), Positives = 47/169 (27%), Gaps = 3/169 (1%)

Query: 1063 QNYYYHQNLSQNYYYHQNLSLKYYCRRNLSQNYYCHQNQSQNYYYHQNQSQNYYYHQNQS 1122
             N  YH   ++++   +     +     L  + + +  +    +   + +         +
Sbjct: 85   DNTGYHGYWTRDFKQIEEHFGNWTTFDTLVNDAHQNGIKVIVDFVPNHSTPFKANDSTFA 144

Query: 1123 QKYYYHQNLSQNYYYHQNLSQNYYCHQNQSQNYYYHQNQSQKYYYHQNLSQNCYYHQNRS 1182
            +    + N +    Y  + ++ Y+ H     N+        K +            Q   
Sbjct: 145  EGGALYNNGTYMGNYFDDATKGYFHHNGDISNWDDRYEAQWKNFTDPAGFSLADLSQENG 204

Query: 1183 QNYYYHQNLSQNYYYHQNQSQKNYYYHLNLSQNYYYHQNLSQNYYYHQN 1231
                Y  + +     H                N  + ++L+   Y  ++
Sbjct: 205  TIAQYLTDAAVQLVAHG---ADGLRIDAVKHFNSGFSKSLADKLYQKKD 250

>d1upsa2 b.42.2.3 (A:290-420) GlcNAc-alpha-1,4-Gal-releasing endo-beta-galactosidase, GngC, C-terminal domain {Clostridium perfringens [TaxId: 1502]} Length = 131

class: All beta proteins
fold: beta-Trefoil
superfamily: Ricin B-like lectins
family: GlcNAc-alpha-1,4-Gal-releasing endo-beta-galactosidase, GngC, C-terminal domain
domain: GlcNAc-alpha-1,4-Gal-releasing endo-beta-galactosidase, GngC, C-terminal domain
species: Clostridium perfringens [TaxId: 1502]

 Score = 39.6 bits (92), Expect = 4e-04
 Identities = 19/124 (15%), Positives = 33/124 (26%), Gaps = 7/124 (5%)

Query: 1114 NYYYHQNQSQKYYYHQNLSQNYYYHQNLSQNYYCHQ---NQSQNYYYHQNQSQKYYYHQN 1170
            NY     Q+ K+ Y +  +    Y     +N    +        Y   +N     Y +  
Sbjct: 2    NYLIRNRQTGKFLYIEENNDKVSYGDITLKNEKNAKWSKEYRDGYTLLKNNETGEYLNIE 61

Query: 1171 LSQNCYYHQNRSQNYYYHQ---NLSQNYYYHQNQSQKNYYYHLNLSQNYYYHQNLSQNYY 1227
                   H    + ++  Q        Y    N+ + N   H   S           N Y
Sbjct: 62   NQTGYIEHGKVPKTWWSAQWSEVPVDGYTRFVNRWKPNMSIHTE-SYEGVLQYGNVPNTY 120

Query: 1228 YHQN 1231
            +   
Sbjct: 121  WTSQ 124

>d1upsa2 b.42.2.3 (A:290-420) GlcNAc-alpha-1,4-Gal-releasing endo-beta-galactosidase, GngC, C-terminal domain {Clostridium perfringens [TaxId: 1502]} Length = 131

class: All beta proteins
fold: beta-Trefoil
superfamily: Ricin B-like lectins
family: GlcNAc-alpha-1,4-Gal-releasing endo-beta-galactosidase, GngC, C-terminal domain
domain: GlcNAc-alpha-1,4-Gal-releasing endo-beta-galactosidase, GngC, C-terminal domain
species: Clostridium perfringens [TaxId: 1502]

 Score = 37.3 bits (86), Expect = 0.002
 Identities = 17/123 (13%), Positives = 30/123 (24%), Gaps = 16/123 (13%)

Query: 1094 NYYCHQNQSQNYYYHQNQSQNYYYHQ-----NQSQK--------YYYHQNLSQNYYYHQN 1140
            NY     Q+  + Y +  +    Y        ++ K        Y   +N     Y +  
Sbjct: 2    NYLIRNRQTGKFLYIEENNDKVSYGDITLKNEKNAKWSKEYRDGYTLLKNNETGEYLNIE 61

Query: 1141 LSQNYYCHQNQSQNYYYHQ---NQSQKYYYHQNLSQNCYYHQNRSQNYYYHQNLSQNYYY 1197
                Y  H    + ++  Q        Y    N  +        S           N Y+
Sbjct: 62   NQTGYIEHGKVPKTWWSAQWSEVPVDGYTRFVNRWKPNMSIHTESYEGVLQYGNVPNTYW 121

Query: 1198 HQN 1200
               
Sbjct: 122  TSQ 124

>d1zu2a1 a.118.8.1 (A:1-145) Mitochondrial import receptor subunit tom20-3 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} Length = 145

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Mitochondrial import receptor subunit tom20-3
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

 Score = 39.8 bits (91), Expect = 5e-04
 Identities = 8/113 (7%), Positives = 29/113 (25%)

Query: 1091 LSQNYYCHQNQSQNYYYHQNQSQNYYYHQNQSQKYYYHQNLSQNYYYHQNLSQNYYCHQN 1150
             +     +  +        +Q  +    +   Q+       +      ++ +     +  
Sbjct: 26   SNPLDADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLIDPKKDEAVWCIGNAY 85

Query: 1151 QSQNYYYHQNQSQKYYYHQNLSQNCYYHQNRSQNYYYHQNLSQNYYYHQNQSQ 1203
             S  +        K+ +             +  N +Y ++L       Q  ++
Sbjct: 86   TSFAFLTPDETEAKHNFDLATQFFQQAVDEQPDNTHYLKSLEMTAKAPQLHAE 138

>d1hc7a2 d.104.1.1 (A:5-276) Prolyl-tRNA synthetase (ProRS) {Thermus thermophilus [TaxId: 274]} Length = 272

class: Alpha and beta proteins (a+b)
fold: Class II aaRS and biotin synthetases
superfamily: Class II aaRS and biotin synthetases
family: Class II aminoacyl-tRNA synthetase (aaRS)-like, catalytic domain
domain: Prolyl-tRNA synthetase (ProRS)
species: Thermus thermophilus [TaxId: 274]

 Score = 41.0 bits (95), Expect = 5e-04
 Identities = 14/204 (6%), Positives = 44/204 (21%), Gaps = 6/204 (2%)

Query: 974  KDKYTGVGGYFGAVPEIGQNYYFHQNQSQNYYYHQNLSQNYYYHQNLSLKYYCRRNLSQ- 1032
               +   G      P      +  +       +   L+   +       +    R  S+ 
Sbjct: 51   DRMFKETGHQNAYFPLFIPMSFLRKEAEHVEGFSPELAVVTHAGGEELEEPLAVRPTSET 110

Query: 1033 -NYYCHQNQSPNNYYYHLNLSQNYYFHQNQSQNYYYHQN--LSQNYYYHQNLSLKYYCRR 1089
               Y       +       L+Q     + + +   + +         +  + + +     
Sbjct: 111  VIGYMWSKWIRSWRDLPQLLNQWGNVVRWEMRTRPFLRTSEFLWQEGHTAHATREEAEEE 170

Query: 1090 NLSQNYYCHQNQSQNYYYHQNQSQNYYYHQNQSQKYYYHQNLSQNYYYHQNLSQNYYCHQ 1149
                     +   +       +       +     Y                  ++Y  +
Sbjct: 171  VRRMLSIYARLAREYAAIPVIEGLKTEKEKFAGAVYTTTIEALMKDGKALQAGTSHYLGE 230

Query: 1150 NQSQ--NYYYHQNQSQKYYYHQNL 1171
            N ++  +  +     Q  Y H   
Sbjct: 231  NFARAFDIKFQDRDLQVKYVHTTS 254

>d1mdoa_ c.67.1.4 (A:) Aminotransferase ArnB {Salmonella typhimurium [TaxId: 90371]} Length = 376

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: GABA-aminotransferase-like
domain: Aminotransferase ArnB
species: Salmonella typhimurium [TaxId: 90371]

 Score = 41.1 bits (95), Expect = 6e-04
 Identities = 9/170 (5%), Positives = 37/170 (21%), Gaps = 3/170 (1%)

Query: 1063 QNYYYHQNLSQNYYYHQNLSLK---YYCRRNLSQNYYCHQNQSQNYYYHQNQSQNYYYHQ 1119
            ++         +++  +N++          N          +           Q+     
Sbjct: 164  RHIGARGTAIFSFHAIKNITCAEGGIVVTDNPQFADKLRSLKFHGLGVDAWDRQSGGRAP 223

Query: 1120 NQSQKYYYHQNLSQNYYYHQNLSQNYYCHQNQSQNYYYHQNQSQKYYYHQNLSQNCYYHQ 1179
                    ++    +      L+Q        ++         Q          +    +
Sbjct: 224  QAEVLAPGYKYNLPDLNAAIALAQLQKLDALNARRAAIAAQYHQAMADLPFQPLSLPSWE 283

Query: 1180 NRSQNYYYHQNLSQNYYYHQNQSQKNYYYHLNLSQNYYYHQNLSQNYYYH 1229
            +    + +   + +        +         +    ++    +Q YY  
Sbjct: 284  HIHAWHLFIIRVDEARCGITRDALMASLKTKGIGTGLHFRAAHTQKYYRE 333

>d1mdoa_ c.67.1.4 (A:) Aminotransferase ArnB {Salmonella typhimurium [TaxId: 90371]} Length = 376

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: GABA-aminotransferase-like
domain: Aminotransferase ArnB
species: Salmonella typhimurium [TaxId: 90371]

 Score = 40.0 bits (92), Expect = 0.001
 Identities = 15/191 (7%), Positives = 40/191 (20%), Gaps = 11/191 (5%)

Query: 1053 QNYYFHQNQSQNYYYHQNLSQN-----YYYHQNLSLKYYCRRNLSQNYYCHQNQSQNYYY 1107
            ++         +++  +N++          +   + K    +           QS     
Sbjct: 164  RHIGARGTAIFSFHAIKNITCAEGGIVVTDNPQFADKLRSLKFHGLGVDAWDRQSGGRAP 223

Query: 1108 HQNQSQNYYYHQNQSQKYYYHQNLSQNYYYHQNLSQNYYCHQNQSQNYYYHQNQSQKYYY 1167
                    Y +              Q                +Q+      Q  S   + 
Sbjct: 224  QAEVLAPGYKYNLPDLNAAIALAQLQKLDALNARRAAIAAQYHQAMADLPFQPLSLPSWE 283

Query: 1168 HQNLSQNCYYHQNRSQNYYYHQNLSQNYYYHQNQSQKNYYYHLNLSQNYYYH----QNLS 1223
            H +         + ++       L               ++    +Q YY        L 
Sbjct: 284  HIHAWHLFIIRVDEARCGITRDALMA--SLKTKGIGTGLHFRAAHTQKYYRERFPTLTLP 341

Query: 1224 QNYYYHQNSFT 1234
               +  +   +
Sbjct: 342  DTEWNSERICS 352

>d2r6na1 d.3.1.1 (A:1-215) (Pro)cathepsin K {Human (Homo sapiens) [TaxId: 9606]} Length = 215

class: Alpha and beta proteins (a+b)
fold: Cysteine proteinases
superfamily: Cysteine proteinases
family: Papain-like
domain: (Pro)cathepsin K
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 40.4 bits (93), Expect = 6e-04
 Identities = 17/153 (11%), Positives = 40/153 (26%), Gaps = 9/153 (5%)

Query: 1085 YYCRRNLSQNYYCHQNQSQNYYYHQNQSQNYYYHQNQSQKYYYHQNLSQNYYYHQNLSQN 1144
               ++         QN        +N      Y  N  Q    ++ +     Y     + 
Sbjct: 37   QLKKKTGKLLNLSPQNL--VDCVSENDGCGGGYMTNAFQYVQKNRGIDSEDAYPYVGQEE 94

Query: 1145 YYCHQNQSQNYYYHQNQSQKYYYHQNLSQNCYYHQNRSQ----NYYYHQNLSQNYYYHQN 1200
               +    +       +       + L +        S     +    Q  S+  YY ++
Sbjct: 95   SCMYNPTGKAAKCRGYREIPEGNEKALKRAVARVGPVSVAIDASLTSFQFYSKGVYYDES 154

Query: 1201 QSQKNYYYHLNLSQNYYYHQNLSQNYYYHQNSF 1233
             +  N  + +       Y       ++  +NS+
Sbjct: 155  CNSDNLNHAVLA---VGYGIQKGNKHWIIKNSW 184

>d1i24a_ c.2.1.2 (A:) Sulfolipid biosynthesis protein SQD1 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} Length = 393

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Sulfolipid biosynthesis protein SQD1
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

 Score = 41.1 bits (94), Expect = 6e-04
 Identities = 9/215 (4%), Positives = 46/215 (21%), Gaps = 1/215 (0%)

Query: 1019 NLSLKYYCRRNLSQNYYCHQNQSPNNYYYHLNLSQNYYFHQNQSQNYYYHQNLSQNYYYH 1078
            NL  + +  +   ++     +       +     ++   +     ++ +        +  
Sbjct: 33   NLVRRLFDHQLGLESLTPIASIHDRISRWKALTGKSIELYVGDICDFEFLAES-FKSFEP 91

Query: 1079 QNLSLKYYCRRNLSQNYYCHQNQSQNYYYHQNQSQNYYYHQNQSQKYYYHQNLSQNYYYH 1138
             ++      R          +     +          +  +   ++ +  +  +   Y  
Sbjct: 92   DSVVHFGEQRSAPYSMIDRSRAVYTQHNNVIGTLNVLFAIKEFGEECHLVKLGTMGEYGT 151

Query: 1139 QNLSQNYYCHQNQSQNYYYHQNQSQKYYYHQNLSQNCYYHQNRSQNYYYHQNLSQNYYYH 1198
             N+                     ++     +LS+    H        +    +      
Sbjct: 152  PNIDIEEGYITITHNGRTDTLPYPKQASSFYHLSKVHDSHNIAFTCKAWGIRATDLNQGV 211

Query: 1199 QNQSQKNYYYHLNLSQNYYYHQNLSQNYYYHQNSF 1233
                + +        +N   +  +           
Sbjct: 212  VYGVKTDETEMHEELRNRLDYDAVFGTALNRFCVQ 246

>d1r7aa2 c.1.8.1 (A:1-434) Sucrose phosphorylase {Bifidobacterium adolescentis [TaxId: 1680]} Length = 434

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: (Trans)glycosidases
family: Amylase, catalytic domain
domain: Sucrose phosphorylase
species: Bifidobacterium adolescentis [TaxId: 1680]

 Score = 41.3 bits (95), Expect = 7e-04
 Identities = 15/214 (7%), Positives = 45/214 (21%), Gaps = 8/214 (3%)

Query: 1028 RNLSQNYYCHQNQSPNNYYYHLNLSQNYYFHQNQSQNY--YYHQNLSQNYYYHQNLSLKY 1085
              LS+ +    +   N+  +     Q+      +S+ Y  +   +        +      
Sbjct: 72   AELSKTHNIMVDAIVNHMSWESKQFQDVLAKGEESEYYPMFLTMSSVFPNGATEEDLAGI 131

Query: 1086 YCRRNLSQNYYCHQNQSQNYYYHQ-NQSQNYYYHQNQSQKYYYHQNLSQNYYYHQNLSQN 1144
            Y  R      +          +      Q      +     Y      Q    H +  + 
Sbjct: 132  YRPRPGLPFTHYKFAGKTRLVWVSFTPQQVDIDTDSDKGWEYLMSIFDQMAASHVSYIRL 191

Query: 1145 YYCHQNQSQNYYYHQNQSQKYYYHQNL-----SQNCYYHQNRSQNYYYHQNLSQNYYYHQ 1199
                    +         + +     L      +           Y     ++       
Sbjct: 192  DAVGYGAKEAGTSCFMTPKTFKLISRLREEGVKRGLEILIEVHSYYKKQVEIASKVDRVY 251

Query: 1200 NQSQKNYYYHLNLSQNYYYHQNLSQNYYYHQNSF 1233
            + +      H   + +     + +     +  + 
Sbjct: 252  DFALPPLLLHALSTGHVEPVAHWTDIRPNNAVTV 285

>d1r7aa2 c.1.8.1 (A:1-434) Sucrose phosphorylase {Bifidobacterium adolescentis [TaxId: 1680]} Length = 434

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: (Trans)glycosidases
family: Amylase, catalytic domain
domain: Sucrose phosphorylase
species: Bifidobacterium adolescentis [TaxId: 1680]

 Score = 40.5 bits (93), Expect = 0.001
 Identities = 16/199 (8%), Positives = 39/199 (19%), Gaps = 12/199 (6%)

Query: 1034 YYCHQNQSPNNYYYHLNLSQNYYFHQNQSQNYYYHQNLSQNYYYHQNLSLKYYCRRNLSQ 1093
                +                +    +   N    ++L+  Y     L   +Y     ++
Sbjct: 100  LAKGEESEYYPM---------FLTMSSVFPNGATEEDLAGIYRPRPGLPFTHYKFAGKTR 150

Query: 1094 NYYCHQNQSQNYYYHQNQSQNYYYHQNQSQKYYYHQ---NLSQNYYYHQNLSQNYYCHQN 1150
              +      Q      +     Y      Q    H     L    Y  +    + +    
Sbjct: 151  LVWVSFTPQQVDIDTDSDKGWEYLMSIFDQMAASHVSYIRLDAVGYGAKEAGTSCFMTPK 210

Query: 1151 QSQNYYYHQNQSQKYYYHQNLSQNCYYHQNRSQNYYYHQNLSQNYYYHQNQSQKNYYYHL 1210
              +     + +  K      +  + YY +         +            +    +   
Sbjct: 211  TFKLISRLREEGVKRGLEILIEVHSYYKKQVEIASKVDRVYDFALPPLLLHALSTGHVEP 270

Query: 1211 NLSQNYYYHQNLSQNYYYH 1229
                      N       H
Sbjct: 271  VAHWTDIRPNNAVTVLDTH 289

>d1gy8a_ c.2.1.2 (A:) Uridine diphosphogalactose-4-epimerase (UDP-galactose 4-epimerase) {Trypanosoma brucei [TaxId: 5691]} Length = 383

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Uridine diphosphogalactose-4-epimerase (UDP-galactose 4-epimerase)
species: Trypanosoma brucei [TaxId: 5691]

 Score = 40.9 bits (94), Expect = 8e-04
 Identities = 16/191 (8%), Positives = 44/191 (23%), Gaps = 3/191 (1%)

Query: 1044 NYYYHLNLSQNYYFHQNQSQNYYYHQNLSQNYYYHQNLSLKYYCRRNLSQNYYCHQNQSQ 1103
            +       S +    +N ++      +  +  +  +  +L+    RN             
Sbjct: 35   SLVGTHGKSDHVETRENVARKLQ-QSDGPKPPWADRYAALEVGDVRNEDFLNGVFTRHGP 93

Query: 1104 NYYYHQNQSQNYYYHQNQSQKYYYHQNLSQNYYYHQNLSQNYYCHQNQSQNYYYHQNQSQ 1163
                    +        +    YY  N+       Q +  +       S +     N + 
Sbjct: 94   IDAVVHMCAFLAVGESVRDPLKYYDNNVVGILRLLQAMLLHKCDKIIFSSSAAIFGNPTM 153

Query: 1164 KYYYHQNLSQNCYYHQNRSQNYYYHQNLSQNYYYHQNQSQKNYYY-HLNLSQNYYYHQNL 1222
                      +    ++  ++ Y    L                   L        H++ 
Sbjct: 154  GSVSTNAEPIDINAKKS-PESPYGESKLIAERMIRDCAEAYGIKGICLRYFNACGAHEDG 212

Query: 1223 SQNYYYHQNSF 1233
                +Y  ++ 
Sbjct: 213  DIGEHYQGSTH 223

>d1wpxa1 c.69.1.5 (A:1-421) Serine carboxypeptidase II {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 421

class: Alpha and beta proteins (a/b)
fold: alpha/beta-Hydrolases
superfamily: alpha/beta-Hydrolases
family: Serine carboxypeptidase-like
domain: Serine carboxypeptidase II
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 40.5 bits (94), Expect = 0.001
 Identities = 29/251 (11%), Positives = 70/251 (27%), Gaps = 18/251 (7%)

Query: 958  PPPPPVLNP----PNSELVYKDKYTGVGGYFGAVPEI-------GQNYYFHQNQSQNYYY 1006
            P   P+ NP     N+ +++ D+   VG  +     +          Y F +     +  
Sbjct: 73   PDLKPIGNPYSWNSNATVIFLDQPVNVGFSYSGSSGVSNTVAAGKDVYNFLELFFDQFPE 132

Query: 1007 HQNLSQNYYYHQNLSLKYYCRRNLSQNYYCHQNQSPNNYYYHLNLSQNYYFHQNQSQNYY 1066
            + N  Q+++        Y              ++  N     + +         Q   Y 
Sbjct: 133  YVNKGQDFHI---AGESYAGHYIPVFASEILSHKDRNFNLTSVLIGNGLTDPLTQ---YN 186

Query: 1067 YHQNLSQNYYYHQNLSLKYYCRRNLSQNYYCHQNQSQNYYYHQNQSQNYYYHQNQSQKYY 1126
            Y++ ++       ++     C         C       Y      S         + +  
Sbjct: 187  YYEPMACGEGGEPSVLPSEECSAMEDSLERCLGLIESCYDSQSVWSCVPATIYCNNAQLA 246

Query: 1127 YHQNLSQNYY-YHQNLSQNYYCHQNQSQNYYYHQNQSQKYYYHQNLSQNCYYHQNRSQNY 1185
             +Q   +N Y   ++      C+        Y      K      +      + + ++N+
Sbjct: 247  PYQRTGRNVYDIRKDCEGGNLCYPTLQDIDDYLNQDYVKEAVGAEVDHYESCNFDINRNF 306

Query: 1186 YYHQNLSQNYY 1196
             +  +  + Y+
Sbjct: 307  LFAGDWMKPYH 317

>d1tn3a_ d.169.1.1 (A:) Tetranectin {Human (Homo sapiens) [TaxId: 9606]} Length = 137

class: Alpha and beta proteins (a+b)
fold: C-type lectin-like
superfamily: C-type lectin-like
family: C-type lectin domain
domain: Tetranectin
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 38.6 bits (88), Expect = 0.001
 Identities = 5/102 (4%), Positives = 22/102 (21%), Gaps = 3/102 (2%)

Query: 1096 YCHQNQSQNYYYHQNQSQNYYYHQNQSQKYYYHQNLSQNYYYHQNLSQNYYCHQNQSQNY 1155
             C              + +      +  +             +   ++  +     ++  
Sbjct: 32   DCISRGGTLSTPQ---TGSENDALYEYLRQSVGNEAEIWLGLNDMAAEGTWVDMTGARIA 88

Query: 1156 YYHQNQSQKYYYHQNLSQNCYYHQNRSQNYYYHQNLSQNYYY 1197
            Y +             ++NC      +   ++ +       Y
Sbjct: 89   YKNWETEITAQPDGGKTENCAVLSGAANGKWFDKRCRDQLPY 130

>d2guya2 c.1.8.1 (A:1-381) Fungal alpha-amylases {Aspergillus oryzae, Taka-amylase [TaxId: 5062]} Length = 381

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: (Trans)glycosidases
family: Amylase, catalytic domain
domain: Fungal alpha-amylases
species: Aspergillus oryzae, Taka-amylase [TaxId: 5062]

 Score = 40.4 bits (93), Expect = 0.001
 Identities = 26/253 (10%), Positives = 59/253 (23%), Gaps = 16/253 (6%)

Query: 961  PPVLNPPNSELVYKDKYTG--VGGYFGAVPEIGQNYYFHQNQSQNYYYHQNLSQNYYYHQ 1018
             PV         Y D Y G      +      G                    +  Y   
Sbjct: 63   TPVTAQLPQTTAYGDAYHGYWQQDIYSLNENYGTADDLK------ALSSALHERGMYLMV 116

Query: 1019 NLSLKYYCRR-NLSQNYYCHQNQSPNNYYYHLNLSQNYYFHQNQSQNYYYHQNLS--QNY 1075
            ++   +       S   Y       +  Y+H       Y  Q Q ++ +   N     + 
Sbjct: 117  DVVANHMGYDGAGSSVDYSVFKPFSSQDYFHPFCFIQNYEDQTQVEDCWLGDNTVSLPDL 176

Query: 1076 YYHQNLSLKYYCRRNLSQNYYCHQNQSQNYYYHQNQSQNYYYHQNQSQKYYYHQNLSQNY 1135
               +++    +     S       +  +       Q   +  +   +  Y   + L  + 
Sbjct: 177  DTTKDVVKNEWYDWVGSLVSNYSIDGLRIDTVKHVQKDFWPGYNKAAGVYCIGEVLDGDP 236

Query: 1136 YYHQNLSQNYYCHQNQSQNYYYHQNQSQKYYYHQNLSQNCYYHQNRSQNYYYHQNLSQNY 1195
             Y        Y +       Y         +   + S +  Y+   +       +     
Sbjct: 237  AYTC-----PYQNVMDGVLNYPIYYPLLNAFKSTSGSMDDLYNMINTVKSDCPDSTLLGT 291

Query: 1196 YYHQNQSQKNYYY 1208
            +   + + +   Y
Sbjct: 292  FVENHDNPRFASY 304

>d1khqa_ d.3.1.1 (A:) Papain {Papaya (Carica papaya) [TaxId: 3649]} Length = 212

class: Alpha and beta proteins (a+b)
fold: Cysteine proteinases
superfamily: Cysteine proteinases
family: Papain-like
domain: Papain
species: Papaya (Carica papaya) [TaxId: 3649]

 Score = 39.6 bits (91), Expect = 0.001
 Identities = 17/149 (11%), Positives = 31/149 (20%), Gaps = 8/149 (5%)

Query: 1085 YYCRRNLSQNYYCHQNQSQNYYYHQNQSQNYYYHQNQSQKYYYHQNLSQNYYYHQNLSQN 1144
                R  + N Y  Q            +  Y +   Q    Y     +   Y      + 
Sbjct: 37   IIKIRTGNLNEYSEQELLDCDRRSYGCNGGYPWSALQLVAQYGIHYRNTYPYEGVQ--RY 94

Query: 1145 YYCHQNQSQNYYYHQNQSQKYYYHQNLSQNCYYHQNRSQNYYYHQNLSQNYYYHQNQSQK 1204
                +           +  + Y    L  +              ++              
Sbjct: 95   CRSREKGPYAAKTDGVRQVQPYNEGALLYSIANQPVSVVLEAAGKDFQLYRGGIFVGPCG 154

Query: 1205 NYYYHLNLSQNYYYHQNLSQNYYYHQNSF 1233
            N   H   +  Y        NY   +NS+
Sbjct: 155  NKVDHAVAAVGYG------PNYILIKNSW 177

>d1iwda_ d.3.1.1 (A:) Ervatamin B {Adam's apple (Ervatamia coronaria) [TaxId: 52861]} Length = 215

class: Alpha and beta proteins (a+b)
fold: Cysteine proteinases
superfamily: Cysteine proteinases
family: Papain-like
domain: Ervatamin B
species: Adam's apple (Ervatamia coronaria) [TaxId: 52861]

 Score = 39.2 bits (90), Expect = 0.002
 Identities = 17/149 (11%), Positives = 36/149 (24%), Gaps = 5/149 (3%)

Query: 1085 YYCRRNLSQNYYCHQNQSQNYYYHQNQSQNYYYHQNQSQKYYYHQNLSQNYYYHQNLSQN 1144
                R         Q          +   N  +  N  Q    +  +     Y  +    
Sbjct: 37   INKIRTGQLISLSEQEL--VDCDTASHGCNGGWMNNAFQYIITNGGIDTQQNYPYS--AV 92

Query: 1145 YYCHQNQSQNYYYHQNQSQKYYYHQNLSQNCYYHQNRSQNYYYHQNLSQNYYYHQNQSQK 1204
                +             +    +++  Q+    Q  S          Q+Y         
Sbjct: 93   QGSCKPYRLRVVSINGFQRVTRNNESALQSAVASQPVSVTVEAAGAPFQHYSSGIFTGPC 152

Query: 1205 NYYYHLNLSQNYYYHQNLSQNYYYHQNSF 1233
                +  +    Y  Q+  +NY+  +NS+
Sbjct: 153  GTAQNHGVVIVGYGTQS-GKNYWIVRNSW 180

>d1s4va_ d.3.1.1 (A:) Vignain (bean endopeptidase) {Castor bean (Ricinus communis) [TaxId: 3988]} Length = 224

class: Alpha and beta proteins (a+b)
fold: Cysteine proteinases
superfamily: Cysteine proteinases
family: Papain-like
domain: Vignain (bean endopeptidase)
species: Castor bean (Ricinus communis) [TaxId: 3988]

 Score = 39.2 bits (90), Expect = 0.002
 Identities = 12/152 (7%), Positives = 31/152 (20%), Gaps = 7/152 (4%)

Query: 1085 YYCRRNLSQNYYCHQ---NQSQNYYYHQNQSQNYYYHQNQSQKYYYHQNLSQNYYYHQNL 1141
                +         Q   +   +     N     Y  +   Q+       +  Y  +   
Sbjct: 38   INQIKTNKLVSLSEQELVDCDTDQNQGCNGGLMDYAFEFIKQRGGITTEANYPYEAYDGT 97

Query: 1142 SQNYYCHQNQSQNYYYHQNQSQKYYYHQNLSQNCYYHQNRSQNYYYHQNLSQNYYYHQNQ 1201
                  +        +                N              Q  S+  +     
Sbjct: 98   CDVSKENAPAVSIDGHENVPENDENALLKAVANQPVSVAIDAGGSDFQFYSEGVFTGSCG 157

Query: 1202 SQKNYYYHLNLSQNYYYHQNLSQNYYYHQNSF 1233
            ++ ++   +      Y        Y+  +NS+
Sbjct: 158  TELDHGVAIV----GYGTTIDGTKYWTVKNSW 185

>d1qxma2 b.42.2.1 (A:149-286) Hemagglutinin component Ha1 {Clostridium botulinum D phage [TaxId: 29342]} Length = 138

class: All beta proteins
fold: beta-Trefoil
superfamily: Ricin B-like lectins
family: Ricin B-like
domain: Hemagglutinin component Ha1
species: Clostridium botulinum D phage [TaxId: 29342]

 Score = 37.4 bits (86), Expect = 0.002
 Identities = 14/98 (14%), Positives = 34/98 (34%), Gaps = 9/98 (9%)

Query: 1130 NLSQNYYYHQNLS----QNYYCHQNQSQNYYYHQNQSQKYYYHQNLSQNCYYHQNRS--- 1182
             L+ + +  +NL+      +    +  Q +    N+++  Y  +    N Y    ++   
Sbjct: 9    QLNSDRFLSKNLNSQIIVLWQWFDSSRQKWIIEYNETKSAYTLKCQENNRYLTWIQNSNN 68

Query: 1183 --QNYYYHQNLSQNYYYHQNQSQKNYYYHLNLSQNYYY 1218
              + Y    +L Q +  +   +  + Y   NL      
Sbjct: 69   YVETYQSTDSLIQYWNINYLDNDASKYILYNLQDTNRV 106

>d1jc9a_ d.171.1.1 (A:) Tachylectin 5a {Japanese horseshoe crab (Tachypleus tridentatus) [TaxId: 6853]} Length = 220

class: Alpha and beta proteins (a+b)
fold: Fibrinogen C-terminal domain-like
superfamily: Fibrinogen C-terminal domain-like
family: Fibrinogen C-terminal domain-like
domain: Tachylectin 5a
species: Japanese horseshoe crab (Tachypleus tridentatus) [TaxId: 6853]

 Score = 38.7 bits (89), Expect = 0.002
 Identities = 20/153 (13%), Positives = 36/153 (23%), Gaps = 23/153 (15%)

Query: 1043 NNYYYHLNLSQNYYFHQNQSQNY--------YYHQNLSQNYYYHQNLSLKYYCRRNLSQN 1094
            N         + +  ++    N              L+    Y     LK          
Sbjct: 53   NYGNPSDYFYKPWKNYKLGFGNIEKDFWLGNDRIFALTNQRNYMIRFDLKDKENDTRYAI 112

Query: 1095 YYCHQNQSQNYYYHQNQSQNYYYHQNQSQKYYYH--QNLSQNYYYHQNLSQNYYCHQNQS 1152
            Y     ++++Y Y         Y  +    +  H   N S     H     +      + 
Sbjct: 113  YQDFWIENEDYLY---CLHIGNYSGDAGNSFGRHNGHNFSTIDKDHDTHETH-CAQTYKG 168

Query: 1153 QNYYYHQNQSQKYYYHQNLSQNCYYHQNRSQNY 1185
              +Y          +  NL  N  Y      +Y
Sbjct: 169  GWWYDR-------CHESNL--NGLYLNGEHNSY 192

>d1fcha_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Human (Homo sapiens) [TaxId: 9606]} Length = 323

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 39.4 bits (90), Expect = 0.002
 Identities = 11/205 (5%), Positives = 34/205 (16%), Gaps = 11/205 (5%)

Query: 1012 QNYYYHQNLSLKYYCRRNLSQNYYCHQNQSPNNYYYHLNLSQNYYFHQNQSQNYYYHQNL 1071
            ++    Q L                 +                         N    +  
Sbjct: 51   KHMEAWQYLGTTQAENEQELLAISALRRCLELKPDNQ----TALMALAVSFTNESLQRQA 106

Query: 1072 SQNYYYHQNLSLKYYCRRNLSQNYYCHQNQSQNYYYHQNQSQNYYYHQNQSQKYYYHQNL 1131
             +        +  Y      ++               +              K  +   +
Sbjct: 107  CEILRDWLRYTPAYAHLVTPAEEGAGGAGL---GPSKRILGSLLSDSLFLEVKELFLAAV 163

Query: 1132 SQNYYYHQNLSQNYYCHQNQSQNYYYHQNQSQKYYYHQNLSQNCYYHQNRSQNYYYHQNL 1191
              +        Q            Y               +    +++  +     +Q+ 
Sbjct: 164  RLDPTSIDPDVQCGLGVLFNLSGEYDKAVDCFTAALSVRPNDYLLWNKLGATLANGNQSE 223

Query: 1192 SQNYYYHQNQSQK----NYYYHLNL 1212
                 Y +    +       Y+L +
Sbjct: 224  EAVAAYRRALELQPGYIRSRYNLGI 248

>d1ppoa_ d.3.1.1 (A:) Caricain (protease omega) {Papaya (Carica papaya) [TaxId: 3649]} Length = 216

class: Alpha and beta proteins (a+b)
fold: Cysteine proteinases
superfamily: Cysteine proteinases
family: Papain-like
domain: Caricain (protease omega)
species: Papaya (Carica papaya) [TaxId: 3649]

 Score = 38.4 bits (88), Expect = 0.002
 Identities = 11/155 (7%), Positives = 32/155 (20%), Gaps = 16/155 (10%)

Query: 1085 YYCRRN------LSQNYYCHQNQSQNYYYHQNQSQNYYYHQNQSQKYYYHQNLSQNYYYH 1138
                R         Q     + +S             Y  +N       +   ++     
Sbjct: 37   INKIRTGKLVELSEQELVDCERRSHGCKGGYPPYALEYVAKNGIHLRSKYPYKAKQGTCR 96

Query: 1139 QNLSQNYYCHQNQSQNYYYHQNQSQKYYYHQNLSQNCYYHQNRSQNYYYHQNLSQNYYYH 1198
                       +       +   +      +         + R    Y         +  
Sbjct: 97   AKQVGGPIVKTSGVGRVQPNNEGNLLNAIAKQPVSVVVESKGRPFQLY-----KGGIFEG 151

Query: 1199 QNQSQKNYYYHLNLSQNYYYHQNLSQNYYYHQNSF 1233
               ++ ++           Y ++  + Y   +NS+
Sbjct: 152  PCGTKVDHAVTA-----VGYGKSGGKGYILIKNSW 181

>d1xwdc1 c.10.2.7 (C:18-259) Follicle-stimulating hormone receptor {Human (Homo sapiens) [TaxId: 9606]} Length = 242

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Follicle-stimulating hormone receptor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 38.7 bits (88), Expect = 0.003
 Identities = 16/179 (8%), Positives = 39/179 (21%), Gaps = 11/179 (6%)

Query: 1048 HLNLSQNY--YFHQNQSQNYYYHQ--NLSQNYYYHQNLSLKYYCRRNLSQNYYCHQNQSQ 1103
             L           +     +   +   +SQN       +  +     L +      N   
Sbjct: 33   ELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEKANNLL 92

Query: 1104 NYYYHQNQSQNYYYHQNQSQKYYYHQNLSQNYYYHQNLSQNYYCHQNQSQNYYYHQNQSQ 1163
                   Q+     +   S     H       +  Q +  +   + N             
Sbjct: 93   YINPEAFQNLPNLQYLLISNTGIKHLPDVHKIHSLQKVLLDIQDNINIHTIERNSFVGLS 152

Query: 1164 KYYYHQNLSQNCYYHQNRSQNYYYHQNLSQNYYYHQNQSQKNYYY-------HLNLSQN 1215
                   L++N     +         +       +  +   N  +        L++S+ 
Sbjct: 153  FESVILWLNKNGIQEIHNCAFNGTQLDELNLSDNNNLEELPNDVFHGASGPVILDISRT 211

>d1cd0a_ b.1.1.1 (A:) Immunoglobulin light chain lambda variable domain, VL-lambda {Human (Homo sapiens), cluster 1 [TaxId: 9606]} Length = 111

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain lambda variable domain, VL-lambda
species: Human (Homo sapiens), cluster 1 [TaxId: 9606]

 Score = 36.6 bits (84), Expect = 0.003
 Identities = 12/87 (13%), Positives = 24/87 (27%), Gaps = 9/87 (10%)

Query: 1082 SLKYYCRR---NLSQNYYCHQNQSQNYYYHQNQSQNYYYHQNQSQKYYYHQNLSQNYYYH 1138
            ++   C R   N+  NY     Q           ++         ++    + S N    
Sbjct: 17   TVTISCTRSSGNIDSNYVQWYQQRPGSAPITVIYEDNQRPSGVPDRFAGSIDRSSNSASL 76

Query: 1139 QNLS------QNYYCHQNQSQNYYYHQ 1159
                       +YYC    ++N  +  
Sbjct: 77   TISGLKTEDEADYYCQSYDARNVVFGG 103

>d1m6da_ d.3.1.1 (A:) Cathepsin F {Human (Homo sapiens) [TaxId: 9606]} Length = 214

class: Alpha and beta proteins (a+b)
fold: Cysteine proteinases
superfamily: Cysteine proteinases
family: Papain-like
domain: Cathepsin F
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 38.0 bits (87), Expect = 0.003
 Identities = 15/152 (9%), Positives = 33/152 (21%), Gaps = 8/152 (5%)

Query: 1085 YYCRRNLSQNYYCHQNQSQNYYYHQNQSQNYYYHQNQSQKYYYHQNLSQNYYYHQNLSQN 1144
             +     +      Q         +        +   + K         +Y Y       
Sbjct: 37   QWFLNQGTLLSLSEQELLDCDKMDKACMGGLPSNAYSAIKNLGGLETEDDYSYQ---GHM 93

Query: 1145 YYCHQNQSQNYYYHQNQSQKYYYHQNLSQNCYYHQNRSQNYYYHQNLSQNYY---YHQNQ 1201
              C  +  +   Y Q+  +     Q L+         S            +      +  
Sbjct: 94   QSCQFSAEKAKVYIQDSVELSQNEQKLAAWLAKRGPISVAINAFGMQFYRHGISRPLRPL 153

Query: 1202 SQKNYYYHLNLSQNYYYHQNLSQNYYYHQNSF 1233
                   H  L   Y    +    ++  +NS+
Sbjct: 154  CSPWLIDHAVLLVGYGQRSD--VPFWAIKNSW 183

>d1b9ha_ c.67.1.4 (A:) 3-amino-5-hydroxybenzoic acid synthase (AHBA synthase) {Amycolatopsis mediterranei [TaxId: 33910]} Length = 384

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: GABA-aminotransferase-like
domain: 3-amino-5-hydroxybenzoic acid synthase (AHBA synthase)
species: Amycolatopsis mediterranei [TaxId: 33910]

 Score = 38.6 bits (88), Expect = 0.004
 Identities = 8/187 (4%), Positives = 25/187 (13%), Gaps = 5/187 (2%)

Query: 996  FHQNQSQNYYYHQNLSQNYYYHQNLSLKYYCRRNLSQNYYCHQNQSPNNYYYHLNLSQNY 1055
              Q +                    + +             ++     +        + Y
Sbjct: 163  RWQGKRVGELDSIATFSFQNGKLMTAGEGGAVVFPDGETEKYETAFLRHSCGRPRDDRRY 222

Query: 1056 YFHQNQSQNYYYHQNLSQNYYYHQNLSLKYYCRRNLSQNYYCHQNQSQNYYYHQNQSQNY 1115
            +     S       + S        L  +   R                        +  
Sbjct: 223  FHKIAGSNMRLNEFSASVLRAQLARLDEQIAVRDERWTLLSRLLGAIDGVVPQGGDVRAD 282

Query: 1116 YYHQNQSQKYYYHQNLSQNYYYHQNLSQNYYCHQNQSQNYYYHQNQSQKYYYHQNLSQNC 1175
                  +          +       L +             +        ++        
Sbjct: 283  RNSHYMAMFRIPGLTEERRNALVDRLVEA-----GLPAFAAFRAIYRTDAFWELGAPDES 337

Query: 1176 YYHQNRS 1182
                 R 
Sbjct: 338  VDAIARR 344

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

No hit with probability above 80.00