Psyllid ID: psy14319

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480------
Protein Sequence
MKFYKYVLGDGDKVKALDRLVTKKAGFNSSHIITGQTYSRKVDVIVTGVLSSLGASIHKKAGFNSSHIITGQTYSRKVDVIVTGVLSSLGASIHKLATDLRLLAHMKEIEEPFESTQIGSSAMAYKRNPMRSERLCSLARFLMSLHQNSLATASTQWMERTLDDSANRRLTLSESFLTTDCLLITLQNVLEGLVVYPKETYSIRIIPDNRLSSHHTTKRSGRPGDGDKVKALDRLVTKKAGFTSSHIITGQTYSRKVDVIVTGVLSSLGASIHKLATDLRLLAHMKEIEEPFESTQIGSSAMAYKRNPMRSERLCSLARFLMSLHQNSLATASTQWMERTLDDSANRFPTKSVFSCVTQVKQHGKENDLVDRIRADPYFAPILNQMPTLLDPKSFYGRAPEQQRLSAKGIHTLSESFLTTDCLLITLQNVLEGLVVYPKVIQRHIDQELPFMATENIIMAMVKAGGDRQVCHEKIRVLSHQAGAQS
Secondary Structure (PSIPRED)
ccHHHHHHHHHHHHHHHHHHHHHHHccccccccccccccccccHHHHHHHHHHHHHHHHHcccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccHHHHcccccccHHHHHHHccccccccHHHHHHHHHHHHHcccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccccccccccccccccccccHHHHHHHHHHHHHHcHHHHHccccccccccccccccccccHHHHHHHHHHHccHHHHHHHHHccccccHHcccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHcccHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHcc
Secondary Structure Prediction (SSPRO)
cHHHHHHHHHHHHHHHHHHHHHHHHccEEEEEEccEEEEccccHHHHHHHHHHHHHHHHHcccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccccccccHHHHHHHHHHHHHHHHHHHccHHHHHHccccccHHHEEccHHHHHHHHHHHHHHHHHHHHcccccHHHHHcccEEHHHHHHHHHHHcccHHHHHHHcHHHHHHHHHHccccccccccccEcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHcccccccccccccccccccHHHHHHHHHHHHHHHHHHHccHHHHHHccccccHHHEEccHHHHHHHHHHHHHHHHcHHHcEEEcHHHHHHHHcccccccccHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHcccEEEcHHHHHHHHHccccHHHHHHHHHHHHHHHHHcc
Coil and Loop (DISEMBL)
mkfykyvlgdgdkvKALDRLVtkkagfnsshiitgqtysrKVDVIVTGVLSSlgasihkkagfnsshiitgqtysrKVDVIVTGVLSSLGASIHKLATDLRLLAHMKEieepfestqigssamaykrnpmrsERLCSLARFLMSLHQNSLATASTQWMERTLDDSANRRLTLSESFLTTDCLLITLQNVLEGlvvypketysiriipdnrlsshhttkrsgrpgdgdkvKALDRLVtkkagftsshiitgqtysrKVDVIVTGVLSSLGASIHKLATDLRLLAHMKEieepfestqigssamaykrnpmrsERLCSLARFLMSLHQNSLATASTQWMERTlddsanrfptksvFSCVTQVKqhgkendlvdriradpyfapilnqmptlldpksfygrapeqqrlsakgihtlsesfLTTDCLLITLQNVLEGLVVYPKVIQRHIDQELPFMATENIIMAMVKAGGDRQVCHEKIRVLshqagaqs
Flexible Loop (DISEMBL)
mkfykyvlgdgdkvkALDRLVTkkagfnsshiitgqtysrkvDVIVTGVLSSLGAsihkkagfnsshiitgqtysRKVDVIVTGVLSSLGASIHKLATDLRLLAHMKEIeepfestqigssaMAYKRNPMRSERLCSLARFLMSLHQNSLATASTQWMERTLDDSANRRLTLSESFLTTDCLLITLQNVLEGLVVYPKETYsiriipdnrlsshhttkrsgrpgdgdkvkALDRLvtkkagftsshiitgqtysrkvDVIVTGVLSSLGASIHKLATDLRLLAHMKEIeepfestqigssaMAYKRNPMRSERLCSLARFLMSLHQNSLATASTQWMERTLDDSANRFPTKSVFSCVTQvkqhgkendlvdrIRADPYFAPILNQMPTLLDPKSFYGRAPEQQRLSAKGIHTLSESFLTTDCLLITLQNVLEGLVVYPKVIQRHIDQELPFMATENIIMAMVKAGGDRQVCHEKIRVlshqagaqs
Low Complexity Region (SEG)
MKFYKYVLGDGDKVKALDRLVTKKAGFNSSHIITGQTYSRKVDVIVTGVLSSLGASIHKKAGFNSSHIITGQTYSRKVDVIVTGVLSSLGASIHKLATDLRLLAHMKEIEEPFESTQIGSSAMAYKRNPMRSERLCSLARFLMSLHQNSLATASTQWMERTLDDSANRRLTLSESFLTTDCLLITLQNVLEGLVVYPKETYSIRIIPDNRLSSHHTTKRSGRPGDGDKVKALDRLVTKKAGFTSSHIITGQTYSRKVDVIVTGVLSSLGASIHKLATDLRLLAHMKEIEEPFESTQIGSSAMAYKRNPMRSERLCSLARFLMSLHQNSLATASTQWMERTLDDSANRFPTKSVFSCVTQVKQHGKENDLVDRIRADPYFAPILNQMPTLLDPKSFYGRAPEQQRLSAKGIHTLSESFLTTDCLLITLQNVLEGLVVYPKVIQRHIDQELPFMATENIIMAMVKAGGDRQVCHEKIRVLSHQAGAQS
Disordered region (IsUnstruct)
**FYKYVLGDGDKVKALDRLVTKKAGFNSSHIITGQTYSRKVDVIVTGVLSSLGASIHKKAGFNSSHIITGQTYSRKVDVIVTGVLSSLGASIHKLATDLRLLAHMKEI************************RLCSLARFLMSLHQNSLATASTQWMERTLDDSANRRLTLSESFLTTDCLLITLQNVLEGLVVYPKETYSIRIIP************************LDRLVTKKAGFTSSHIITGQTYSRKVDVIVTGVLSSLGASIHKLATDLRLLAHMKEI************************RLCSLARFLMSLHQNSLATASTQWMERTLD**ANRFPTKSVFSCVTQVKQHGKENDLVDRIRADPYFAPILNQMPTLLDPKSFYGR*******SAKGIHTLSESFLTTDCLLITLQNVLEGLVVYPKVIQRHIDQELPFMATENIIMAMVKAGGDRQVCHEKIRVL********
Disordered Region (DISOPRED)
MKFYKYVLGDGDKVKALDRLVTKKAGFNSSHIITGQTYSRKVDVIVTGVLSSLGASIHKKAGFNSSHIITGQTYSRKVDVIVTGVLSSLGASIHKLATDLRLLAHMKEIEEPFESTQIGSSAMAYKRNPMRSERLCSLARFLMSLHQNSLATASTQWMERTLDDSANRRLTLSESFLTTDCLLITLQNVLEGLVVYPKETYSIRIIPDNRLSSHHTTKRSGRPGDGDKVKALDRLVTKKAGFTSSHIITGQTYSRKVDVIVTGVLSSLGASIHKLATDLRLLAHMKEIEEPFESTQIGSSAMAYKRNPMRSERLCSLARFLMSLHQNSLATASTQWMERTLDDSANRFPTKSVFSCVTQVKQHGKENDLVDRIRADPYFAPILNQMPTLLDPKSFYGRAPEQQRLSAKGIHTLSESFLTTDCLLITLQNVLEGLVVYPKVIQRHIDQELPFMATENIIMAMVKAGGDRQVCHEKIRVLSHQ*****
Disordered Region (DISEMBL)
MKFYKYVLGDGDKVKALDRLVTKKAGFNSSHIITGQTYSRKVDVIVTGVLSSLGASIHKKAGFNSSHIITGQTYSRKVDVIVTGVLSSLGASIHKLATDLRLLAHMKEIEEPFESTQIGSSAMAYKRNPMRSERLCSLARFLMSLHQNSLATASTQWMERTLDDSANRRLTLSESFLTTDCLLITLQNVLEGLVVYPKETYSIRIIPDNRLS*************GDKVKALDRLVTKKAGFTSSHIITGQTYSRKVDVIVTGVLSSLGASIHKLATDLRLLAHMKEIEEPFESTQIGSSAMAYKRNPMRSERLCSLARFLMSLHQNSLATASTQWMERTLDDSANRFPTKSVFSCVTQVKQHGKENDLVDRIRADPYFAPILNQMPTLLDPKSFYGRAPEQQRLSAKGIHTLSESFLTTDCLLITLQNVLEGLVVYPKVIQRHIDQELPFMATENIIMAMVKAGGDRQVCHEKIRVL********
Disordered Region (DISPRO)
MKFYKYVLGDGDKVKALDRLVTKKAGFNSSHIITGQTYSRKVDVIVTGVLSSLGASIHKKAGFNSSHIITGQTYSRKVDVIVTGVLSSLGASIHKLATDLRLLAHMKEIEEPFES****SS*****RNPMRSERLCSLARFLMSLHQNSLATASTQWMERTLDDSANRRLTLSESFLTTDCLLITLQNVLEGLVVYPKETYSIRIIPDNRLSSHHTTKRSGRPGDGDKVKALDRLVTKKAGFTSSHIITGQTYSRKVDVIVTGVLSSLGASIHKLATDLRLLAHMKEIEEPFES****SS*****RNPMRSERLCSLARFLMSLHQNSLATASTQWMERTLDDSANRFPTKSVFSCVTQVKQHGKENDLVDRIRADPYFAPILNQMPTLLDPKSFYGRAPEQQRLSAKGIHTLSESFLTTDCLLITLQNVLEGLVVYPKVIQRHIDQELPFMATENIIMAMVKAGGDRQVCHEKIRVLSHQAGA**
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
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TM Helix, Signal Peptide (MEMSAT_SVM)
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MKFYKYVLGDGDKVKALDRLVTKKAGFNSSHIITGQTYSRKVDVIVTGVLSSLGASIHKKAGFNSSHIITGQTYSRKVDVIVTGVLSSLGASIHKLATDLRLLAHMKEIEEPFESTQIGSSAMAYKRNPMRSERLCSLARFLMSLHQNSLATASTQWMERTLDDSANRRLTLSESFLTTDCLLITLQNVLEGLVVYPKETYSIRIIPDNRLSSHHTTKRSGRPGDGDKVKALDRLVTKKAGFTSSHIITGQTYSRKVDVIVTGVLSSLGASIHKLATDLRLLAHMKEIEEPFESTQIGSSAMAYKRNPMRSERLCSLARFLMSLHQNSLATASTQWMERTLDDSANRFPTKSVFSCVTQVKQHGKENDLVDRIRADPYFAPILNQMPTLLDPKSFYGRAPEQQRLSAKGIHTLSESFLTTDCLLITLQNVLEGLVVYPKVIQRHIDQELPFMATENIIMAMVKAGGDRQVCHEKIRVLSHQAGAQS
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	486	2.2.26 [Sep-21-2011]
P21265	485	Adenylosuccinate lyase OS	yes	N/A	0.329	0.329	0.566	6e-54
P54822	484	Adenylosuccinate lyase OS	yes	N/A	0.166	0.167	0.671	1e-53
A3KN12	490	Adenylosuccinate lyase OS	yes	N/A	0.166	0.165	0.671	2e-53
P30566	484	Adenylosuccinate lyase OS	no	N/A	0.164	0.165	0.671	2e-53
Q8HXY5	484	Adenylosuccinate lyase OS	N/A	N/A	0.164	0.165	0.671	3e-53
O60105	482	Adenylosuccinate lyase OS	yes	N/A	0.281	0.284	0.612	2e-47
Q05911	482	Adenylosuccinate lyase OS	yes	N/A	0.304	0.307	0.604	5e-47
Q60Q90	478	Adenylosuccinate lyase OS	N/A	N/A	0.351	0.357	0.409	2e-34
Q21774	478	Adenylosuccinate lyase OS	yes	N/A	0.329	0.334	0.460	5e-34
Q9UZ99	450	Adenylosuccinate lyase OS	yes	N/A	0.255	0.275	0.372	5e-16

>sp|P21265|PUR8_CHICK Adenylosuccinate lyase OS=Gallus gallus GN=ADSL PE=2 SV=2

 Score =  212 bits (539), Expect = 6e-54,   Method: Compositional matrix adjust.
 Identities = 111/196 (56%), Positives = 130/196 (66%), Gaps = 36/196 (18%)

Query: 3   FYKYVLGDGDKVKALDRLVTKKAGFNSSHIITGQTYSRKVDVIVTGVLSSLGASIHKKAG 62
           F +   GD  KV+ LDRLVT KAG                                    
Sbjct: 209 FLQLFEGDHSKVEELDRLVTAKAG------------------------------------ 232

Query: 63  FNSSHIITGQTYSRKVDVIVTGVLSSLGASIHKLATDLRLLAHMKEIEEPFESTQIGSSA 122
           F  S+++TGQTYSRKVD+ V  VL+SLGAS+HK+ TD+RLLA++KEIEEPFE  QIGSSA
Sbjct: 233 FKRSYMVTGQTYSRKVDIEVLSVLASLGASVHKICTDIRLLANLKEIEEPFEKDQIGSSA 292

Query: 123 MAYKRNPMRSERLCSLARFLMSLHQNSLATASTQWMERTLDDSANRRLTLSESFLTTDCL 182
           M YKRNPMRSER CSLAR LM+L  + L TAS QW ERTLDDSANRR+ L+E+FLT D +
Sbjct: 293 MPYKRNPMRSERCCSLARHLMTLVLDPLQTASVQWFERTLDDSANRRVCLAEAFLTADII 352

Query: 183 LITLQNVLEGLVVYPK 198
           L TLQN+ EGLVVYPK
Sbjct: 353 LSTLQNISEGLVVYPK 368

Gallus gallus (taxid: 9031)
EC: 4EC: .EC: 3EC: .EC: 2EC: .EC: 2

>sp|P54822|PUR8_MOUSE Adenylosuccinate lyase OS=Mus musculus GN=Adsl PE=2 SV=2

 Score =  211 bits (536), Expect = 1e-53,   Method: Compositional matrix adjust.
 Identities = 100/149 (67%), Positives = 120/149 (80%)

Query: 50  LSSLGASIHKKAGFNSSHIITGQTYSRKVDVIVTGVLSSLGASIHKLATDLRLLAHMKEI 109
           +  L   + +KAGF  + IITGQTY+RKVD+ V  VL+SLGAS+HK+ TD+RLLA++KE+
Sbjct: 219 VEQLDKMVTEKAGFKRAFIITGQTYTRKVDIEVLSVLASLGASVHKICTDIRLLANLKEM 278

Query: 110 EEPFESTQIGSSAMAYKRNPMRSERLCSLARFLMSLHQNSLATASTQWMERTLDDSANRR 169
           EEPFE  QIGSSAM YKRNPMRSER CSLAR LM+L  + L TAS QW ERTLDDSANRR
Sbjct: 279 EEPFEKQQIGSSAMPYKRNPMRSERCCSLARHLMALTMDPLQTASVQWFERTLDDSANRR 338

Query: 170 LTLSESFLTTDCLLITLQNVLEGLVVYPK 198
           + L+E+FLT D +L TLQN+ EGLVVYPK
Sbjct: 339 ICLAEAFLTADTILNTLQNISEGLVVYPK 367

Mus musculus (taxid: 10090)

EC: 4

EC: .

EC: 3

EC: .

EC: 2

EC: .

EC: 2

>sp|A3KN12|PUR8_BOVIN Adenylosuccinate lyase OS=Bos taurus GN=ADSL PE=2 SV=1

 Score =  210 bits (535), Expect = 2e-53,   Method: Compositional matrix adjust.
 Identities = 100/149 (67%), Positives = 120/149 (80%)

Query: 50  LSSLGASIHKKAGFNSSHIITGQTYSRKVDVIVTGVLSSLGASIHKLATDLRLLAHMKEI 109
           +  L   + +KAGF  + IITGQTY+RKVD+ V  VL+SLGAS+HK+ TD+RLLA++KE+
Sbjct: 225 VEQLDKMVTEKAGFKRAFIITGQTYTRKVDIEVLSVLASLGASVHKICTDIRLLANLKEM 284

Query: 110 EEPFESTQIGSSAMAYKRNPMRSERLCSLARFLMSLHQNSLATASTQWMERTLDDSANRR 169
           EEPFE  QIGSSAM YKRNPMRSER CSLAR LM+L  + L TAS QW ERTLDDSANRR
Sbjct: 285 EEPFEKQQIGSSAMPYKRNPMRSERCCSLARHLMALVMDPLQTASVQWFERTLDDSANRR 344

Query: 170 LTLSESFLTTDCLLITLQNVLEGLVVYPK 198
           + L+E+FLT D +L TLQN+ EGLVVYPK
Sbjct: 345 ICLAEAFLTADTVLNTLQNISEGLVVYPK 373

Bos taurus (taxid: 9913)

EC: 4

EC: .

EC: 3

EC: .

EC: 2

EC: .

EC: 2

>sp|P30566|PUR8_HUMAN Adenylosuccinate lyase OS=Homo sapiens GN=ADSL PE=1 SV=2

 Score =  210 bits (534), Expect = 2e-53,   Method: Compositional matrix adjust.
 Identities = 100/149 (67%), Positives = 120/149 (80%)

Query: 50  LSSLGASIHKKAGFNSSHIITGQTYSRKVDVIVTGVLSSLGASIHKLATDLRLLAHMKEI 109
           +  L   + +KAGF  + IITGQTY+RKVD+ V  VL+SLGAS+HK+ TD+RLLA++KE+
Sbjct: 219 VEQLDKMVTEKAGFKRAFIITGQTYTRKVDIEVLSVLASLGASVHKICTDIRLLANLKEM 278

Query: 110 EEPFESTQIGSSAMAYKRNPMRSERLCSLARFLMSLHQNSLATASTQWMERTLDDSANRR 169
           EEPFE  QIGSSAM YKRNPMRSER CSLAR LM+L  + L TAS QW ERTLDDSANRR
Sbjct: 279 EEPFEKQQIGSSAMPYKRNPMRSERCCSLARHLMTLVMDPLQTASVQWFERTLDDSANRR 338

Query: 170 LTLSESFLTTDCLLITLQNVLEGLVVYPK 198
           + L+E+FLT D +L TLQN+ EGLVVYPK
Sbjct: 339 ICLAEAFLTADTILNTLQNISEGLVVYPK 367

Homo sapiens (taxid: 9606)

EC: 4

EC: .

EC: 3

EC: .

EC: 2

EC: .

EC: 2

>sp|Q8HXY5|PUR8_MACFA Adenylosuccinate lyase OS=Macaca fascicularis GN=ADSL PE=2 SV=1

 Score =  209 bits (533), Expect = 3e-53,   Method: Compositional matrix adjust.
 Identities = 100/149 (67%), Positives = 119/149 (79%)

Query: 50  LSSLGASIHKKAGFNSSHIITGQTYSRKVDVIVTGVLSSLGASIHKLATDLRLLAHMKEI 109
           +  L   +  KAGF  + IITGQTY+RKVD+ V  VL+SLGAS+HK+ TD+RLLA++KE+
Sbjct: 219 VEQLDKMVTDKAGFKRAFIITGQTYTRKVDIEVLSVLASLGASVHKICTDIRLLANLKEM 278

Query: 110 EEPFESTQIGSSAMAYKRNPMRSERLCSLARFLMSLHQNSLATASTQWMERTLDDSANRR 169
           EEPFE  QIGSSAM YKRNPMRSER CSLAR LM+L  + L TAS QW ERTLDDSANRR
Sbjct: 279 EEPFEKQQIGSSAMPYKRNPMRSERCCSLARHLMTLVMDPLQTASVQWFERTLDDSANRR 338

Query: 170 LTLSESFLTTDCLLITLQNVLEGLVVYPK 198
           + L+E+FLT D +L TLQN+ EGLVVYPK
Sbjct: 339 ICLAEAFLTADTILNTLQNISEGLVVYPK 367

Macaca fascicularis (taxid: 9541)

EC: 4

EC: .

EC: 3

EC: .

EC: 2

EC: .

EC: 2

>sp|O60105|PUR8_SCHPO Adenylosuccinate lyase OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=ade8 PE=3 SV=1

 Score =  191 bits (484), Expect = 2e-47,   Method: Compositional matrix adjust.
 Identities = 87/142 (61%), Positives = 114/142 (80%)

Query: 57  IHKKAGFNSSHIITGQTYSRKVDVIVTGVLSSLGASIHKLATDLRLLAHMKEIEEPFEST 116
           + K +GF++ + +TGQTY RK+D+ V   L+S GA+ HK+ATD+RLLA++KE+EEPFE+ 
Sbjct: 223 VAKLSGFDNVYPVTGQTYDRKIDIDVLQPLASFGATAHKIATDIRLLANLKEVEEPFEAG 282

Query: 117 QIGSSAMAYKRNPMRSERLCSLARFLMSLHQNSLATASTQWMERTLDDSANRRLTLSESF 176
           QIGSSAMAYKRNPMR ER+CS AR++M+L  N+L TAS QW ERTLDDS+NRR  L E+F
Sbjct: 283 QIGSSAMAYKRNPMRCERICSQARYIMNLIPNALNTASVQWFERTLDDSSNRRSLLPEAF 342

Query: 177 LTTDCLLITLQNVLEGLVVYPK 198
           L TD +L  L NV+ G+V+YPK
Sbjct: 343 LFTDSVLKILLNVISGMVIYPK 364

Schizosaccharomyces pombe (strain 972 / ATCC 24843) (taxid: 284812)

EC: 4

EC: .

EC: 3

EC: .

EC: 2

EC: .

EC: 2

>sp|Q05911|PUR8_YEAST Adenylosuccinate lyase OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=ADE13 PE=1 SV=1

 Score =  189 bits (480), Expect = 5e-47,   Method: Compositional matrix adjust.
 Identities = 90/149 (60%), Positives = 114/149 (76%)

Query: 50  LSSLGASIHKKAGFNSSHIITGQTYSRKVDVIVTGVLSSLGASIHKLATDLRLLAHMKEI 109
           + +L   + +  GF+  + +TGQTYSRK+D+ V   LSS  A+ HK+ATD+RLLA++KE+
Sbjct: 216 VEALDERVTELLGFDKVYPVTGQTYSRKIDIDVLAPLSSFAATAHKMATDIRLLANLKEV 275

Query: 110 EEPFESTQIGSSAMAYKRNPMRSERLCSLARFLMSLHQNSLATASTQWMERTLDDSANRR 169
           EEPFE +QIGSSAMAYKRNPMR ER+CSLAR L SL  +++ TAS QW ERTLDDSA RR
Sbjct: 276 EEPFEKSQIGSSAMAYKRNPMRCERVCSLARHLGSLFSDAVQTASVQWFERTLDDSAIRR 335

Query: 170 LTLSESFLTTDCLLITLQNVLEGLVVYPK 198
           ++L  +FLT D LL TL N+  GLVVYPK
Sbjct: 336 ISLPSAFLTADILLSTLLNISSGLVVYPK 364

Saccharomyces cerevisiae (strain ATCC 204508 / S288c) (taxid: 559292)

EC: 4

EC: .

EC: 3

EC: .

EC: 2

EC: .

EC: 2

>sp|Q60Q90|PUR8_CAEBR Adenylosuccinate lyase OS=Caenorhabditis briggsae GN=CBG21917 PE=3 SV=1

 Score =  147 bits (372), Expect = 2e-34,   Method: Compositional matrix adjust.
 Identities = 86/210 (40%), Positives = 118/210 (56%), Gaps = 39/210 (18%)

Query: 3   FYKYVLGDGDKVKALDRLVTKKAGFNSSHIITGQTYSRKVDVIVTGVLSSLGASIHKKAG 62
           F     GD +KV+ALD LVTKKA                                     
Sbjct: 204 FLTLFSGDEEKVEALDELVTKKAN------------------------------------ 227

Query: 63  FNSSHIITGQTYSRKVDVIVTGVLSSLGASIHKLATDLRLLAHMKEIEEPFESTQIGSSA 122
           F +  +ITGQTYSR+ D  +   LS LGA+  K+ TD+R+L    E+ EPFE  QIGSSA
Sbjct: 228 FANRFLITGQTYSRQQDSQLVFSLSLLGAAAKKVCTDIRVLQAFGELLEPFEKDQIGSSA 287

Query: 123 MAYKRNPMRSERLCSLARFLMSLHQNSLATASTQWMERTLDDSANRRLTLSESFLTTDCL 182
           M YK+NPM+SER C+LAR L++  Q +L   + Q +ERTLDDSA RR+ + +  LT + L
Sbjct: 288 MPYKKNPMKSERCCALARKLINAPQEALTILADQGLERTLDDSAGRRMLIPDVLLTAEAL 347

Query: 183 LITLQNVLEGLVVYPKETYSIRIIPDNRLS 212
           L TLQN+ EGL V   +T +++ I ++ ++
Sbjct: 348 LTTLQNIFEGLTV---QTDNVKKIVEDEIA 374

Caenorhabditis briggsae (taxid: 6238)

EC: 4

EC: .

EC: 3

EC: .

EC: 2

EC: .

EC: 2

>sp|Q21774|PUR8_CAEEL Adenylosuccinate lyase OS=Caenorhabditis elegans GN=R06C7.5 PE=1 SV=1

 Score =  145 bits (367), Expect = 5e-34,   Method: Compositional matrix adjust.
 Identities = 75/163 (46%), Positives = 110/163 (67%), Gaps = 3/163 (1%)

Query: 50  LSSLGASIHKKAGFNSSHIITGQTYSRKVDVIVTGVLSSLGASIHKLATDLRLLAHMKEI 109
           + +L   + KKA F++  +ITGQTYSR+ D  +   LS LGA+  K+ TD+R+L    E+
Sbjct: 215 VEALDELVTKKANFSNRFLITGQTYSRQQDSQLVFSLSLLGAAAKKVCTDIRVLQAFGEL 274

Query: 110 EEPFESTQIGSSAMAYKRNPMRSERLCSLARFLMSLHQNSLATASTQWMERTLDDSANRR 169
            EPFE  QIGSSAM YK+NPM+SER C+L+R L++  Q +L   + Q +ERTLDDSA RR
Sbjct: 275 LEPFEKDQIGSSAMPYKKNPMKSERCCALSRKLINAPQEALTILADQGLERTLDDSAGRR 334

Query: 170 LTLSESFLTTDCLLITLQNVLEGLVVYPKETYSIRIIPDNRLS 212
           + + +  LT + LL TLQN+ EGL V   +T +++ I ++ ++
Sbjct: 335 MLIPDVLLTAEALLTTLQNIFEGLSV---QTDNVKKIVEDEIA 374

Caenorhabditis elegans (taxid: 6239)

EC: 4

EC: .

EC: 3

EC: .

EC: 2

EC: .

EC: 2

>sp|Q9UZ99|PUR8_PYRAB Adenylosuccinate lyase OS=Pyrococcus abyssi (strain GE5 / Orsay) GN=purB PE=3 SV=1

 Score = 86.3 bits (212), Expect = 5e-16,   Method: Compositional matrix adjust.
 Identities = 51/137 (37%), Positives = 78/137 (56%), Gaps = 13/137 (9%)

Query: 69  ITGQTYSRKVDVIVTGVLSSLGASIHKLATDLRLLAHMK--EIEEPFESTQIGSSAMAYK 126
           IT Q   R V   +   L+ + +++ K+A ++R L   +  E+ EPF   Q+GSS M +K
Sbjct: 220 ITNQIIQRDVYAELMFFLALVASTLDKMALEIRNLQRTEILEVSEPFGEKQVGSSTMPHK 279

Query: 127 RNPMRSERLCSLARFLMS-----LHQNSLATASTQWMERTLDDSANRRLTLSESFLTTDC 181
           RNP+R+E++C LAR L S     L  N L      W ER L +S+  R+ L ESF+  D 
Sbjct: 280 RNPIRTEKVCGLARVLYSNVIPALLNNPL------WHERDLTNSSVERVILPESFVLLDE 333

Query: 182 LLITLQNVLEGLVVYPK 198
           +L  ++ VL+GL  +P+
Sbjct: 334 MLKVMKKVLKGLEFFPE 350

Pyrococcus abyssi (strain GE5 / Orsay) (taxid: 272844)

EC: 4

EC: .

EC: 3

EC: .

EC: 2

EC: .

EC: 2

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	486
383859985	485	PREDICTED: adenylosuccinate lyase-like [	0.411	0.412	0.530	7e-65
321476688	478	hypothetical protein DAPPUDRAFT_306459 [	0.407	0.414	0.511	6e-60
405960327	783	Adenylosuccinate lyase [Crassostrea giga	0.407	0.252	0.492	3e-59
390596385	486	Adenylosuccinate lyase [Punctularia stri	0.170	0.170	0.711	4e-56
291279613	477	adenylosuccinate lyase [Deferribacter de	0.407	0.415	0.476	4e-55
380022418	485	PREDICTED: adenylosuccinate lyase-like [	0.327	0.327	0.569	9e-55
255505291	477	adenylosuccinate lyase [Bryantella forma	0.407	0.415	0.465	9e-55
322784015	420	hypothetical protein SINV_03874 [Solenop	0.300	0.347	0.712	1e-54
307208112	492	Adenylosuccinate lyase [Harpegnathos sal	0.304	0.300	0.666	2e-54
449541851	484	hypothetical protein CERSUDRAFT_118523 [	0.316	0.318	0.6	2e-54

>gi|383859985|ref|XP_003705472.1| PREDICTED: adenylosuccinate lyase-like [Megachile rotundata]

 Score =  254 bits (649), Expect = 7e-65,   Method: Compositional matrix adjust.
 Identities = 139/262 (53%), Positives = 163/262 (62%), Gaps = 62/262 (23%)

Query: 224 GDGDKVKALDRLVTKKAGFTSSHIITGQTYSRKVDVIVTGVLSSLGASIHKLATDLRLLA 283
           GDG+KVK LDRLVTK AGF   + +TGQTYSRKVDV    VLSSLG+S+HK+ +D+RLLA
Sbjct: 215 GDGEKVKQLDRLVTKMAGFEKHYPVTGQTYSRKVDVECLNVLSSLGSSVHKICSDIRLLA 274

Query: 284 HMKEIEEPFESTQIGSSAMAYKRNPMRSERLCSLARFLMSLHQNSLATASTQWMERTLDD 343
           +MKEIEEPFESTQIGSSAM YKRNPMRSER CS+AR     H  +LA  + Q        
Sbjct: 275 NMKEIEEPFESTQIGSSAMPYKRNPMRSERCCSIAR-----HLMTLANNALQ-------- 321

Query: 344 SANRFPTKSVFSCVTQVKQHGKENDLVDRIRADPYFAPILNQMPTLLDPKSFYGRAPEQQ 403
                      +  TQ  +   ++  + RI                              
Sbjct: 322 -----------TAATQWMERTLDDSAIRRI------------------------------ 340

Query: 404 RLSAKGIHTLSESFLTTDCLLITLQNVLEGLVVYPKVIQRHIDQELPFMATENIIMAMVK 463
                   TLSE+FL+ D +L+TLQN+ EGLVVYP VI RH+ QELPFM  ENIIMAMVK
Sbjct: 341 --------TLSEAFLSADVILMTLQNITEGLVVYPNVIARHVAQELPFMTAENIIMAMVK 392

Query: 464 AGGDRQVCHEKIRVLSHQAGAQ 485
           AGGDRQVCHEKIRVLS +AGAQ
Sbjct: 393 AGGDRQVCHEKIRVLSQEAGAQ 414

Source: Megachile rotundata

Species: Megachile rotundata

Genus: Megachile

Family: Megachilidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|321476688|gb|EFX87648.1| hypothetical protein DAPPUDRAFT_306459 [Daphnia pulex]

 Score =  238 bits (606), Expect = 6e-60,   Method: Compositional matrix adjust.
 Identities = 133/260 (51%), Positives = 157/260 (60%), Gaps = 62/260 (23%)

Query: 224 GDGDKVKALDRLVTKKAGFTSSHIITGQTYSRKVDVIVTGVLSSLGASIHKLATDLRLLA 283
           GD +KVK LDRLVT+ AGF  S II GQTY+RK+D+     LSSL ASIHK+ TD+RLLA
Sbjct: 208 GDHEKVKRLDRLVTEMAGFNRSFIICGQTYTRKLDIECVSALSSLAASIHKMCTDIRLLA 267

Query: 284 HMKEIEEPFESTQIGSSAMAYKRNPMRSERLCSLARFLMSLHQNSLATASTQWMERTLDD 343
             KE+EEPFE +Q+GSSAM YKRNPMRSER CSLAR L++L                   
Sbjct: 268 SRKEMEEPFEKSQVGSSAMPYKRNPMRSERCCSLARHLITL------------------- 308

Query: 344 SANRFPTKSVFSCVTQVKQHGKENDLVDRIRADPYFAPILNQMPTLLDPKSFYGRAPEQQ 403
           +AN F              H   N  ++R   D                           
Sbjct: 309 AANPF--------------HTAANQWMERTLDD--------------------------- 327

Query: 404 RLSAKGIHTLSESFLTTDCLLITLQNVLEGLVVYPKVIQRHIDQELPFMATENIIMAMVK 463
             SA    TL+E+FLT D LL  +QN+ EGLVVYPKVI+R+I QELPFMATEN+I+AMVK
Sbjct: 328 --SANRRITLAEAFLTADALLQMVQNISEGLVVYPKVIERYIQQELPFMATENVIVAMVK 385

Query: 464 AGGDRQVCHEKIRVLSHQAG 483
           AGGDRQ CHE+IRVLS QAG
Sbjct: 386 AGGDRQECHEQIRVLSQQAG 405

Source: Daphnia pulex

Species: Daphnia pulex

Genus: Daphnia

Family: Daphniidae

Order: Diplostraca

Class: Branchiopoda

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|405960327|gb|EKC26258.1| Adenylosuccinate lyase [Crassostrea gigas]

 Score =  235 bits (600), Expect = 3e-59,   Method: Compositional matrix adjust.
 Identities = 128/260 (49%), Positives = 158/260 (60%), Gaps = 62/260 (23%)

Query: 224 GDGDKVKALDRLVTKKAGFTSSHIITGQTYSRKVDVIVTGVLSSLGASIHKLATDLRLLA 283
           GD +KV+ LDR+VT+ AGF  ++++ GQTYSRKVDV    VL+SLGAS+HK+ TD+RLLA
Sbjct: 214 GDDEKVEELDRMVTEMAGFKQTYMVCGQTYSRKVDVDCLNVLASLGASVHKICTDIRLLA 273

Query: 284 HMKEIEEPFESTQIGSSAMAYKRNPMRSERLCSLARFLMSLHQNSLATASTQWMERTLDD 343
           + KE+EEPFE  QIGSSAM YKRNPMRSER C+L+R L+                     
Sbjct: 274 NFKELEEPFEKDQIGSSAMPYKRNPMRSERCCALSRHLI--------------------- 312

Query: 344 SANRFPTKSVFSCVTQVKQHGKENDLVDRIRADPYFAPILNQMPTLLDPKSFYGRAPEQQ 403
                       C+ Q                DP        M   LD  +        +
Sbjct: 313 ------------CLVQ----------------DPLMTASTQWMERTLDDSA-------NR 337

Query: 404 RLSAKGIHTLSESFLTTDCLLITLQNVLEGLVVYPKVIQRHIDQELPFMATENIIMAMVK 463
           R+S      L E+FLT D +L TLQN+ EGLVVYPKVI+R ++QELPFMA+ENIIMAMVK
Sbjct: 338 RIS------LPEAFLTADIILSTLQNISEGLVVYPKVIERRVNQELPFMASENIIMAMVK 391

Query: 464 AGGDRQVCHEKIRVLSHQAG 483
           AGGDRQ CHE+IRVLS +AG
Sbjct: 392 AGGDRQECHEQIRVLSQEAG 411

Source: Crassostrea gigas

Species: Crassostrea gigas

Genus: Crassostrea

Family: Ostreidae

Order: Ostreoida

Class: Bivalvia

Phylum: Mollusca

Superkingdom: Eukaryota

>gi|390596385|gb|EIN05787.1| Adenylosuccinate lyase [Punctularia strigosozonata HHB-11173 SS5]

 Score =  225 bits (574), Expect = 4e-56,   Method: Compositional matrix adjust.
 Identities = 106/149 (71%), Positives = 126/149 (84%)

Query: 50  LSSLGASIHKKAGFNSSHIITGQTYSRKVDVIVTGVLSSLGASIHKLATDLRLLAHMKEI 109
           +  L A + K +GF+ ++ +T QTYSRK+D+ V   L+S GA+ HK+ATD+RLLAH+KEI
Sbjct: 215 VEKLDALVTKLSGFSYAYPVTSQTYSRKIDIDVLAPLASFGATAHKIATDIRLLAHLKEI 274

Query: 110 EEPFESTQIGSSAMAYKRNPMRSERLCSLARFLMSLHQNSLATASTQWMERTLDDSANRR 169
           EEPFESTQIGSSAMAYKRNPMRSER+CSL+R LM LHQN+L TASTQW ERTLDDSANRR
Sbjct: 275 EEPFESTQIGSSAMAYKRNPMRSERICSLSRHLMVLHQNALMTASTQWFERTLDDSANRR 334

Query: 170 LTLSESFLTTDCLLITLQNVLEGLVVYPK 198
           +TL E+FLTTD +L TLQNV EGLVVYPK
Sbjct: 335 VTLPEAFLTTDIVLTTLQNVTEGLVVYPK 363

Source: Punctularia strigosozonata HHB-11173 SS5

Species: Punctularia strigosozonata

Genus: Punctularia

Family: Punctulariaceae

Order: Corticiales

Class: Agaricomycetes

Phylum: Basidiomycota

Superkingdom: Eukaryota

>gi|291279613|ref|YP_003496448.1| adenylosuccinate lyase [Deferribacter desulfuricans SSM1] gi|290754315|dbj|BAI80692.1| adenylosuccinate lyase [Deferribacter desulfuricans SSM1]

 Score =  222 bits (565), Expect = 4e-55,   Method: Compositional matrix adjust.
 Identities = 124/260 (47%), Positives = 151/260 (58%), Gaps = 62/260 (23%)

Query: 224 GDGDKVKALDRLVTKKAGFTSSHIITGQTYSRKVDVIVTGVLSSLGASIHKLATDLRLLA 283
            D +KVK LD LV+KK GF     ITGQTY+RK D  V  VL+ +  S HK+ATD+RLL 
Sbjct: 207 NDSEKVKKLDLLVSKKMGFDKVLKITGQTYTRKQDTKVLTVLAKIAESAHKMATDIRLLQ 266

Query: 284 HMKEIEEPFESTQIGSSAMAYKRNPMRSERLCSLARFLMSLHQNSLATASTQWMERTLDD 343
           ++KE+EEPFE TQIGSSAMAYKRNPMRSER+CSL+R+++SL  N   T +TQW ERTLDD
Sbjct: 267 NLKEVEEPFEKTQIGSSAMAYKRNPMRSERVCSLSRYVISLVFNPFMTQATQWFERTLDD 326

Query: 344 SANRFPTKSVFSCVTQVKQHGKENDLVDRIRADPYFAPILNQMPTLLDPKSFYGRAPEQQ 403
           SANR                        RI                  P+SF G      
Sbjct: 327 SANR------------------------RISI----------------PESFMG------ 340

Query: 404 RLSAKGIHTLSESFLTTDCLLITLQNVLEGLVVYPKVIQRHIDQELPFMATENIIMAMVK 463
                            D +L  L N+ +G+VVY K+I++HI+ ELPFMATENIIM  VK
Sbjct: 341 ----------------VDSILNLLINITDGMVVYEKMIEKHINDELPFMATENIIMEAVK 384

Query: 464 AGGDRQVCHEKIRVLSHQAG 483
            GG+RQ  HE IRV S +AG
Sbjct: 385 KGGNRQEMHEIIRVHSMEAG 404

Source: Deferribacter desulfuricans SSM1

Species: Deferribacter desulfuricans

Genus: Deferribacter

Family: Deferribacteraceae

Order: Deferribacterales

Class: Deferribacteres

Phylum: Deferribacteres

Superkingdom: Bacteria

>gi|380022418|ref|XP_003695043.1| PREDICTED: adenylosuccinate lyase-like [Apis florea]

 Score =  221 bits (562), Expect = 9e-55,   Method: Compositional matrix adjust.
 Identities = 111/195 (56%), Positives = 133/195 (68%), Gaps = 36/195 (18%)

Query: 3   FYKYVLGDGDKVKALDRLVTKKAGFNSSHIITGQTYSRKVDVIVTGVLSSLGASIHKKAG 62
           F +   GDG+KVK LDRLVTK AG                                    
Sbjct: 209 FLQLFNGDGEKVKKLDRLVTKMAG------------------------------------ 232

Query: 63  FNSSHIITGQTYSRKVDVIVTGVLSSLGASIHKLATDLRLLAHMKEIEEPFESTQIGSSA 122
           F   + +TGQTYSRKVDV     LSSLG+++HK+ +D+RLLA MKEIEEPFESTQIGSSA
Sbjct: 233 FEKCYPVTGQTYSRKVDVECLNALSSLGSTVHKICSDIRLLASMKEIEEPFESTQIGSSA 292

Query: 123 MAYKRNPMRSERLCSLARFLMSLHQNSLATASTQWMERTLDDSANRRLTLSESFLTTDCL 182
           M YKRNPMRSER CS+AR LM+L  N+L TA+TQWMERTLDDSANRR+TLSE+FL+ D +
Sbjct: 293 MPYKRNPMRSERCCSIARHLMTLANNALQTAATQWMERTLDDSANRRITLSEAFLSGDVI 352

Query: 183 LITLQNVLEGLVVYP 197
           L+TLQN+ EG++VYP
Sbjct: 353 LMTLQNITEGMIVYP 367

Source: Apis florea

Species: Apis florea

Genus: Apis

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|255505291|ref|ZP_05345240.3| adenylosuccinate lyase [Bryantella formatexigens DSM 14469] gi|255268622|gb|EET61827.1| adenylosuccinate lyase [Marvinbryantia formatexigens DSM 14469]

 Score =  221 bits (562), Expect = 9e-55,   Method: Compositional matrix adjust.
 Identities = 121/260 (46%), Positives = 153/260 (58%), Gaps = 62/260 (23%)

Query: 224 GDGDKVKALDRLVTKKAGFTSSHIITGQTYSRKVDVIVTGVLSSLGASIHKLATDLRLLA 283
           GD +K+  +D ++ +K GF + + ++GQTYSRKVD  V  VL+ + AS HK + D+RLL 
Sbjct: 207 GDQEKIDKIDPMIAEKMGFEACYPVSGQTYSRKVDTRVLNVLAGIAASAHKFSNDIRLLQ 266

Query: 284 HMKEIEEPFESTQIGSSAMAYKRNPMRSERLCSLARFLMSLHQNSLATASTQWMERTLDD 343
           H+KE+EEPFE TQIGSSAMAYKRNPMRSER+ SL+RF++    N   T++TQW ERTLDD
Sbjct: 267 HLKEVEEPFEKTQIGSSAMAYKRNPMRSERIASLSRFVICDALNPAITSATQWFERTLDD 326

Query: 344 SANRFPTKSVFSCVTQVKQHGKENDLVDRIRADPYFAPILNQMPTLLDPKSFYGRAPEQQ 403
           SAN+                                         L  P+ F        
Sbjct: 327 SANK----------------------------------------RLSVPEGF-------- 338

Query: 404 RLSAKGIHTLSESFLTTDCLLITLQNVLEGLVVYPKVIQRHIDQELPFMATENIIMAMVK 463
            L+  GI  L        CL     NV++GLVVYPKVI++H+  ELPFMATENI+M  VK
Sbjct: 339 -LAVDGILDL--------CL-----NVVDGLVVYPKVIEKHLMAELPFMATENIMMDAVK 384

Query: 464 AGGDRQVCHEKIRVLSHQAG 483
           AGGDRQ  HEKIR LS +AG
Sbjct: 385 AGGDRQELHEKIRELSMEAG 404

Source: Bryantella formatexigens DSM 14469

Species: Marvinbryantia formatexigens

Genus: Marvinbryantia

Family: Lachnospiraceae

Order: Clostridiales

Class: Clostridia

Phylum: Firmicutes

Superkingdom: Bacteria

>gi|322784015|gb|EFZ11155.1| hypothetical protein SINV_03874 [Solenopsis invicta]

 Score =  221 bits (562), Expect = 1e-54,   Method: Compositional matrix adjust.
 Identities = 104/146 (71%), Positives = 124/146 (84%)

Query: 53  LGASIHKKAGFNSSHIITGQTYSRKVDVIVTGVLSSLGASIHKLATDLRLLAHMKEIEEP 112
           L A + K AGF+  + +TGQTYSRKVD+    VLSSLGA++HK+ TD+RLLA+MKEIEEP
Sbjct: 158 LDALVTKMAGFDKYYAVTGQTYSRKVDIECLNVLSSLGATVHKICTDIRLLANMKEIEEP 217

Query: 113 FESTQIGSSAMAYKRNPMRSERLCSLARFLMSLHQNSLATASTQWMERTLDDSANRRLTL 172
           FESTQIGSSAM YKRNPMRSER CS+AR LM L  N+L TA+TQWMERTLDDSANRRLTL
Sbjct: 218 FESTQIGSSAMPYKRNPMRSERCCSVARHLMVLVNNTLHTAATQWMERTLDDSANRRLTL 277

Query: 173 SESFLTTDCLLITLQNVLEGLVVYPK 198
           +E++L+ D +L+TLQN+ EGLVVYPK
Sbjct: 278 AEAYLSADSILMTLQNITEGLVVYPK 303

Source: Solenopsis invicta

Species: Solenopsis invicta

Genus: Solenopsis

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|307208112|gb|EFN85616.1| Adenylosuccinate lyase [Harpegnathos saltator]

 Score =  220 bits (560), Expect = 2e-54,   Method: Compositional matrix adjust.
 Identities = 106/159 (66%), Positives = 129/159 (81%), Gaps = 11/159 (6%)

Query: 40  RKVDVIVTGVLSSLGASIHKKAGFNSSHIITGQTYSRKVDVIVTGVLSSLGASIHKLATD 99
           +++DV+VT           K AGF   + +TGQTYSRKVD+    VLSSLGA++HK+ +D
Sbjct: 228 KRLDVLVT-----------KMAGFEKYYGVTGQTYSRKVDIECLNVLSSLGATVHKICSD 276

Query: 100 LRLLAHMKEIEEPFESTQIGSSAMAYKRNPMRSERLCSLARFLMSLHQNSLATASTQWME 159
           +RLLA+MKEIEEPFESTQIGSSAM YKRNPMRSER CS+AR LM+L  N+L TA+TQWME
Sbjct: 277 IRLLANMKEIEEPFESTQIGSSAMPYKRNPMRSERCCSVARHLMTLVNNTLQTAATQWME 336

Query: 160 RTLDDSANRRLTLSESFLTTDCLLITLQNVLEGLVVYPK 198
           RTLDDSANRRLTL+E+FL+ D +L+TLQN+ EGLVVYPK
Sbjct: 337 RTLDDSANRRLTLAEAFLSADTILMTLQNISEGLVVYPK 375

Source: Harpegnathos saltator

Species: Harpegnathos saltator

Genus: Harpegnathos

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|449541851|gb|EMD32833.1| hypothetical protein CERSUDRAFT_118523 [Ceriporiopsis subvermispora B]

 Score =  219 bits (559), Expect = 2e-54,   Method: Compositional matrix adjust.
 Identities = 114/190 (60%), Positives = 131/190 (68%), Gaps = 36/190 (18%)

Query: 9   GDGDKVKALDRLVTKKAGFNSSHIITGQTYSRKVDVIVTGVLSSLGASIHKKAGFNSSHI 68
           GD DKV+ LDRLVT+ +GF       G  Y                              
Sbjct: 210 GDHDKVEELDRLVTRLSGF-------GYAYP----------------------------- 233

Query: 69  ITGQTYSRKVDVIVTGVLSSLGASIHKLATDLRLLAHMKEIEEPFESTQIGSSAMAYKRN 128
           +T QTYSRK+D+ V   L+ LGA+ HKLATDLRLLA++KE+EEPFESTQIGSSAMAYKRN
Sbjct: 234 VTSQTYSRKIDIDVLAPLAGLGATAHKLATDLRLLANLKEVEEPFESTQIGSSAMAYKRN 293

Query: 129 PMRSERLCSLARFLMSLHQNSLATASTQWMERTLDDSANRRLTLSESFLTTDCLLITLQN 188
           PMRSER+CSLAR LM LHQN+L T+S QW ERTLDDSANRR+TL E+FLT D +L TLQN
Sbjct: 294 PMRSERICSLARHLMVLHQNALMTSSVQWFERTLDDSANRRITLPEAFLTADIVLTTLQN 353

Query: 189 VLEGLVVYPK 198
           V EGLVVYPK
Sbjct: 354 VSEGLVVYPK 363

Source: Ceriporiopsis subvermispora B

Species: Ceriporiopsis subvermispora

Genus: Ceriporiopsis

Family: Meruliaceae

Order: Polyporales

Class: Agaricomycetes

Phylum: Basidiomycota

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	486
FB|FBgn0038467	481	CG3590 [Drosophila melanogaste	0.306	0.309	0.624	1.6e-61
UNIPROTKB|E1BR00	459	ADSL "Adenylosuccinate lyase"	0.306	0.324	0.677	1.4e-62
UNIPROTKB|F1NDB3	485	ADSL "Adenylosuccinate lyase"	0.306	0.307	0.677	1.4e-62
UNIPROTKB|P21265	485	ADSL "Adenylosuccinate lyase"	0.306	0.307	0.677	1.4e-62
RGD|1307617	484	Adsl "adenylosuccinate lyase"	0.306	0.307	0.677	1.3e-63
UNIPROTKB|D2KPI8	484	ADSL "Adenylosuccinate lyase"	0.306	0.307	0.677	3.7e-62
UNIPROTKB|F1MHP6	490	ADSL "Adenylosuccinate lyase"	0.306	0.304	0.671	2e-61
MGI|MGI:103202	484	Adsl "adenylosuccinate lyase"	0.306	0.307	0.671	8.8e-63
ZFIN|ZDB-GENE-030131-6363	482	adsl "adenylosuccinate lyase"	0.306	0.309	0.657	8.8e-63
UNIPROTKB|E2RGK2	490	TNRC6B "Uncharacterized protei	0.306	0.304	0.677	1.6e-61

FB|FBgn0038467 CG3590 [Drosophila melanogaster (taxid:7227)]

 Score = 483 (175.1 bits), Expect = 1.6e-61, Sum P(2) = 1.6e-61
 Identities = 93/149 (62%), Positives = 117/149 (78%)

Query:    50 LSSLGASIHKKAGFNSSHIITGQTYSRKVDVIVTGVLSSLGASIHKLATDLRLLAHMKEI 109
             +  L   + + AGF  ++ +TGQTYSRKVDV +   L+SLG +IHK+ +DLR+LA  KE+
Sbjct:   214 VKQLDQLVTELAGFKKAYAVTGQTYSRKVDVEIVAALASLGTTIHKMCSDLRILASRKEL 273

Query:   110 EEPFESTQIGSSAMAYKRNPMRSERLCSLARFLMSLHQNSLATASTQWMERTLDDSANRR 169
             EEPFESTQIGSSAM YKRNPMRSER C+LAR L++L  ++  T +TQW+ERTLDDSANRR
Sbjct:   274 EEPFESTQIGSSAMPYKRNPMRSERCCALARHLITLFSSAANTHATQWLERTLDDSANRR 333

Query:   170 LTLSESFLTTDCLLITLQNVLEGLVVYPK 198
             LTLSE+FL  D  L+TL N+ +GLVVYPK
Sbjct:   334 LTLSEAFLAADAALLTLLNISQGLVVYPK 362

GO:0009152 "purine ribonucleotide biosynthetic process" evidence=IEA

GO:0006163 "purine nucleotide metabolic process" evidence=ISS

GO:0005829 "cytosol" evidence=ISS

GO:0004018 "N6-(1,2-dicarboxyethyl)AMP AMP-lyase (fumarate-forming) activity" evidence=ISS

UNIPROTKB|E1BR00 ADSL "Adenylosuccinate lyase" [Gallus gallus (taxid:9031)]

 Score = 512 (185.3 bits), Expect = 1.4e-62, Sum P(2) = 1.4e-62
 Identities = 101/149 (67%), Positives = 120/149 (80%)

Query:    50 LSSLGASIHKKAGFNSSHIITGQTYSRKVDVIVTGVLSSLGASIHKLATDLRLLAHMKEI 109
             +  L   +  KAGF  S+++TGQTYSRKVD+ V  VL+SLGAS+HK+ TD+RLLA++KEI
Sbjct:   194 VEELDRLVTAKAGFKRSYMVTGQTYSRKVDIEVLSVLASLGASVHKICTDIRLLANLKEI 253

Query:   110 EEPFESTQIGSSAMAYKRNPMRSERLCSLARFLMSLHQNSLATASTQWMERTLDDSANRR 169
             EEPFE  QIGSSAM YKRNPMRSER CSLAR LM+L  + L TAS QW ERTLDDSANRR
Sbjct:   254 EEPFEKDQIGSSAMPYKRNPMRSERCCSLARHLMTLVLDPLQTASVQWFERTLDDSANRR 313

Query:   170 LTLSESFLTTDCLLITLQNVLEGLVVYPK 198
             + L+E+FLT D +L TLQN+ EGLVVYPK
Sbjct:   314 VCLAEAFLTADIILSTLQNISEGLVVYPK 342

GO:0004018 "N6-(1,2-dicarboxyethyl)AMP AMP-lyase (fumarate-forming) activity" evidence=IEA

GO:0005739 "mitochondrion" evidence=IEA

GO:0006167 "AMP biosynthetic process" evidence=IEA

GO:0051262 "protein tetramerization" evidence=IEA

UNIPROTKB|F1NDB3 ADSL "Adenylosuccinate lyase" [Gallus gallus (taxid:9031)]

 Score = 512 (185.3 bits), Expect = 1.4e-62, Sum P(2) = 1.4e-62
 Identities = 101/149 (67%), Positives = 120/149 (80%)

Query:    50 LSSLGASIHKKAGFNSSHIITGQTYSRKVDVIVTGVLSSLGASIHKLATDLRLLAHMKEI 109
             +  L   +  KAGF  S+++TGQTYSRKVD+ V  VL+SLGAS+HK+ TD+RLLA++KEI
Sbjct:   220 VEELDRLVTAKAGFKRSYMVTGQTYSRKVDIEVLSVLASLGASVHKICTDIRLLANLKEI 279

Query:   110 EEPFESTQIGSSAMAYKRNPMRSERLCSLARFLMSLHQNSLATASTQWMERTLDDSANRR 169
             EEPFE  QIGSSAM YKRNPMRSER CSLAR LM+L  + L TAS QW ERTLDDSANRR
Sbjct:   280 EEPFEKDQIGSSAMPYKRNPMRSERCCSLARHLMTLVLDPLQTASVQWFERTLDDSANRR 339

Query:   170 LTLSESFLTTDCLLITLQNVLEGLVVYPK 198
             + L+E+FLT D +L TLQN+ EGLVVYPK
Sbjct:   340 VCLAEAFLTADIILSTLQNISEGLVVYPK 368

GO:0004018 "N6-(1,2-dicarboxyethyl)AMP AMP-lyase (fumarate-forming) activity" evidence=IEA

GO:0005739 "mitochondrion" evidence=IEA

GO:0006167 "AMP biosynthetic process" evidence=IEA

GO:0051262 "protein tetramerization" evidence=IEA

UNIPROTKB|P21265 ADSL "Adenylosuccinate lyase" [Gallus gallus (taxid:9031)]

 Score = 512 (185.3 bits), Expect = 1.4e-62, Sum P(2) = 1.4e-62
 Identities = 101/149 (67%), Positives = 120/149 (80%)

Query:    50 LSSLGASIHKKAGFNSSHIITGQTYSRKVDVIVTGVLSSLGASIHKLATDLRLLAHMKEI 109
             +  L   +  KAGF  S+++TGQTYSRKVD+ V  VL+SLGAS+HK+ TD+RLLA++KEI
Sbjct:   220 VEELDRLVTAKAGFKRSYMVTGQTYSRKVDIEVLSVLASLGASVHKICTDIRLLANLKEI 279

Query:   110 EEPFESTQIGSSAMAYKRNPMRSERLCSLARFLMSLHQNSLATASTQWMERTLDDSANRR 169
             EEPFE  QIGSSAM YKRNPMRSER CSLAR LM+L  + L TAS QW ERTLDDSANRR
Sbjct:   280 EEPFEKDQIGSSAMPYKRNPMRSERCCSLARHLMTLVLDPLQTASVQWFERTLDDSANRR 339

Query:   170 LTLSESFLTTDCLLITLQNVLEGLVVYPK 198
             + L+E+FLT D +L TLQN+ EGLVVYPK
Sbjct:   340 VCLAEAFLTADIILSTLQNISEGLVVYPK 368

GO:0004018 "N6-(1,2-dicarboxyethyl)AMP AMP-lyase (fumarate-forming) activity" evidence=IEA

GO:0070626 "(S)-2-(5-amino-1-(5-phospho-D-ribosyl)imidazole-4-carboxamido)succ inate AMP-lyase (fumarate-forming) activity" evidence=IEA

GO:0006189 "'de novo' IMP biosynthetic process" evidence=IEA;TAS

GO:0044208 "'de novo' AMP biosynthetic process" evidence=IEA

GO:0005829 "cytosol" evidence=TAS

GO:0006144 "purine nucleobase metabolic process" evidence=TAS

GO:0006167 "AMP biosynthetic process" evidence=TAS

GO:0044281 "small molecule metabolic process" evidence=TAS

GO:0055086 "nucleobase-containing small molecule metabolic process" evidence=TAS

RGD|1307617 Adsl "adenylosuccinate lyase" [Rattus norvegicus (taxid:10116)]

 Score = 516 (186.7 bits), Expect = 1.3e-63, Sum P(2) = 1.3e-63
 Identities = 101/149 (67%), Positives = 121/149 (81%)

Query:    50 LSSLGASIHKKAGFNSSHIITGQTYSRKVDVIVTGVLSSLGASIHKLATDLRLLAHMKEI 109
             +  L   + +KAGF  ++IITGQTY+RKVD+ V  VL+SLGAS+HK+ TD+RLLA++KE+
Sbjct:   219 VEQLDKMVTEKAGFKRAYIITGQTYTRKVDIEVLSVLASLGASVHKICTDIRLLANLKEM 278

Query:   110 EEPFESTQIGSSAMAYKRNPMRSERLCSLARFLMSLHQNSLATASTQWMERTLDDSANRR 169
             EEPFE  QIGSSAM YKRNPMRSER CSLAR LMSL  + L TAS QW ERTLDDSANRR
Sbjct:   279 EEPFEKQQIGSSAMPYKRNPMRSERCCSLARHLMSLTMDPLQTASVQWFERTLDDSANRR 338

Query:   170 LTLSESFLTTDCLLITLQNVLEGLVVYPK 198
             + L+E+FLT D +L TLQNV EGLV+YPK
Sbjct:   339 ICLAEAFLTADTILTTLQNVSEGLVLYPK 367

GO:0001666 "response to hypoxia" evidence=IEP

GO:0004018 "N6-(1,2-dicarboxyethyl)AMP AMP-lyase (fumarate-forming) activity" evidence=ISO;IMP;IDA

GO:0005737 "cytoplasm" evidence=ISO

GO:0005739 "mitochondrion" evidence=IEA;ISO

GO:0005829 "cytosol" evidence=IDA

GO:0006163 "purine nucleotide metabolic process" evidence=IMP;IDA

GO:0006167 "AMP biosynthetic process" evidence=ISO;IDA

GO:0007584 "response to nutrient" evidence=IDA

GO:0009060 "aerobic respiration" evidence=IMP

GO:0009156 "ribonucleoside monophosphate biosynthetic process" evidence=IDA

GO:0014850 "response to muscle activity" evidence=IEP

GO:0042594 "response to starvation" evidence=IEP

GO:0051262 "protein tetramerization" evidence=ISO;IDA

GO:0070626 "(S)-2-(5-amino-1-(5-phospho-D-ribosyl)imidazole-4-carboxamido)succ inate AMP-lyase (fumarate-forming) activity" evidence=IDA

UNIPROTKB|D2KPI8 ADSL "Adenylosuccinate lyase" [Sus scrofa (taxid:9823)]

 Score = 512 (185.3 bits), Expect = 3.7e-62, Sum P(2) = 3.7e-62
 Identities = 101/149 (67%), Positives = 120/149 (80%)

Query:    50 LSSLGASIHKKAGFNSSHIITGQTYSRKVDVIVTGVLSSLGASIHKLATDLRLLAHMKEI 109
             +  L   + +KAGF  + IITGQTY+RKVD+ V  VL+SLGAS+HK+ TD+RLLA++KEI
Sbjct:   219 VEQLDKMVTEKAGFKRAFIITGQTYTRKVDIEVLSVLASLGASVHKICTDIRLLANLKEI 278

Query:   110 EEPFESTQIGSSAMAYKRNPMRSERLCSLARFLMSLHQNSLATASTQWMERTLDDSANRR 169
             EEPFE  QIGSSAM YKRNPMRSER CSLAR LM+L  + L TAS QW ERTLDDSANRR
Sbjct:   279 EEPFEKQQIGSSAMPYKRNPMRSERCCSLARHLMTLVMDPLQTASVQWFERTLDDSANRR 338

Query:   170 LTLSESFLTTDCLLITLQNVLEGLVVYPK 198
             + L+E+FLT D +L TLQN+ EGLVVYPK
Sbjct:   339 ICLAEAFLTADTILNTLQNISEGLVVYPK 367

GO:0051262 "protein tetramerization" evidence=IEA

GO:0006167 "AMP biosynthetic process" evidence=IEA

GO:0005739 "mitochondrion" evidence=IEA

GO:0004018 "N6-(1,2-dicarboxyethyl)AMP AMP-lyase (fumarate-forming) activity" evidence=IEA

UNIPROTKB|F1MHP6 ADSL "Adenylosuccinate lyase" [Bos taurus (taxid:9913)]

 Score = 508 (183.9 bits), Expect = 2.0e-61, Sum P(2) = 2.0e-61
 Identities = 100/149 (67%), Positives = 120/149 (80%)

Query:    50 LSSLGASIHKKAGFNSSHIITGQTYSRKVDVIVTGVLSSLGASIHKLATDLRLLAHMKEI 109
             +  L   + +KAGF  + IITGQTY+RKVD+ V  VL+SLGAS+HK+ TD+RLLA++KE+
Sbjct:   225 VEQLDKMVTEKAGFKRAFIITGQTYTRKVDIEVLSVLASLGASVHKICTDIRLLANLKEM 284

Query:   110 EEPFESTQIGSSAMAYKRNPMRSERLCSLARFLMSLHQNSLATASTQWMERTLDDSANRR 169
             EEPFE  QIGSSAM YKRNPMRSER CSLAR LM+L  + L TAS QW ERTLDDSANRR
Sbjct:   285 EEPFEKQQIGSSAMPYKRNPMRSERCCSLARHLMALVMDPLQTASVQWFERTLDDSANRR 344

Query:   170 LTLSESFLTTDCLLITLQNVLEGLVVYPK 198
             + L+E+FLT D +L TLQN+ EGLVVYPK
Sbjct:   345 ICLAEAFLTADTVLNTLQNISEGLVVYPK 373

GO:0009152 "purine ribonucleotide biosynthetic process" evidence=IEA

GO:0004018 "N6-(1,2-dicarboxyethyl)AMP AMP-lyase (fumarate-forming) activity" evidence=IEA

MGI|MGI:103202 Adsl "adenylosuccinate lyase" [Mus musculus (taxid:10090)]

 Score = 510 (184.6 bits), Expect = 8.8e-63, Sum P(2) = 8.8e-63
 Identities = 100/149 (67%), Positives = 120/149 (80%)

Query:    50 LSSLGASIHKKAGFNSSHIITGQTYSRKVDVIVTGVLSSLGASIHKLATDLRLLAHMKEI 109
             +  L   + +KAGF  + IITGQTY+RKVD+ V  VL+SLGAS+HK+ TD+RLLA++KE+
Sbjct:   219 VEQLDKMVTEKAGFKRAFIITGQTYTRKVDIEVLSVLASLGASVHKICTDIRLLANLKEM 278

Query:   110 EEPFESTQIGSSAMAYKRNPMRSERLCSLARFLMSLHQNSLATASTQWMERTLDDSANRR 169
             EEPFE  QIGSSAM YKRNPMRSER CSLAR LM+L  + L TAS QW ERTLDDSANRR
Sbjct:   279 EEPFEKQQIGSSAMPYKRNPMRSERCCSLARHLMALTMDPLQTASVQWFERTLDDSANRR 338

Query:   170 LTLSESFLTTDCLLITLQNVLEGLVVYPK 198
             + L+E+FLT D +L TLQN+ EGLVVYPK
Sbjct:   339 ICLAEAFLTADTILNTLQNISEGLVVYPK 367

GO:0003824 "catalytic activity" evidence=IEA

GO:0004018 "N6-(1,2-dicarboxyethyl)AMP AMP-lyase (fumarate-forming) activity" evidence=ISO;ISA

GO:0005739 "mitochondrion" evidence=IDA

GO:0005829 "cytosol" evidence=ISO

GO:0006163 "purine nucleotide metabolic process" evidence=ISO

GO:0006164 "purine nucleotide biosynthetic process" evidence=IEA

GO:0006167 "AMP biosynthetic process" evidence=ISO;ISA

GO:0007584 "response to nutrient" evidence=ISO

GO:0009060 "aerobic respiration" evidence=ISO

GO:0009152 "purine ribonucleotide biosynthetic process" evidence=IEA

GO:0009156 "ribonucleoside monophosphate biosynthetic process" evidence=ISO

GO:0016829 "lyase activity" evidence=IEA

GO:0051262 "protein tetramerization" evidence=ISO

GO:0070626 "(S)-2-(5-amino-1-(5-phospho-D-ribosyl)imidazole-4-carboxamido)succ inate AMP-lyase (fumarate-forming) activity" evidence=ISO

ZFIN|ZDB-GENE-030131-6363 adsl "adenylosuccinate lyase" [Danio rerio (taxid:7955)]

 Score = 501 (181.4 bits), Expect = 8.8e-63, Sum P(2) = 8.8e-63
 Identities = 98/149 (65%), Positives = 119/149 (79%)

Query:    50 LSSLGASIHKKAGFNSSHIITGQTYSRKVDVIVTGVLSSLGASIHKLATDLRLLAHMKEI 109
             +  L   + + AGF  S+++TGQTYSRKVD+    VLSSL A+IHK+ TD+RLLA++KEI
Sbjct:   217 VEELDNMVTEMAGFKKSYLVTGQTYSRKVDIDSLCVLSSLAATIHKICTDIRLLANLKEI 276

Query:   110 EEPFESTQIGSSAMAYKRNPMRSERLCSLARFLMSLHQNSLATASTQWMERTLDDSANRR 169
             EEPFE  QIGSSAM YKRNPMR+ER CSLAR LM+L  N L TA+ QW+ERTLDDSANRR
Sbjct:   277 EEPFEKEQIGSSAMPYKRNPMRAERCCSLARHLMALVSNPLQTAAVQWLERTLDDSANRR 336

Query:   170 LTLSESFLTTDCLLITLQNVLEGLVVYPK 198
             ++L E+FLT D +L TLQN+ EGLVVYPK
Sbjct:   337 ISLPEAFLTADIILSTLQNITEGLVVYPK 365

GO:0004018 "N6-(1,2-dicarboxyethyl)AMP AMP-lyase (fumarate-forming) activity" evidence=IEA

GO:0003824 "catalytic activity" evidence=IEA

GO:0009152 "purine ribonucleotide biosynthetic process" evidence=IEA

GO:0005737 "cytoplasm" evidence=ISS

GO:0016829 "lyase activity" evidence=IEA

UNIPROTKB|E2RGK2 TNRC6B "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 516 (186.7 bits), Expect = 1.6e-61, Sum P(2) = 1.6e-61
 Identities = 101/149 (67%), Positives = 121/149 (81%)

Query:    50 LSSLGASIHKKAGFNSSHIITGQTYSRKVDVIVTGVLSSLGASIHKLATDLRLLAHMKEI 109
             +  L   + +KAGFN + IITGQTY+RKVD+ V  VL+SLGAS+HK+ TD+RLLA++KE+
Sbjct:   225 VEQLDKMVTEKAGFNRAFIITGQTYTRKVDIEVLSVLASLGASVHKICTDIRLLANLKEM 284

Query:   110 EEPFESTQIGSSAMAYKRNPMRSERLCSLARFLMSLHQNSLATASTQWMERTLDDSANRR 169
             EEPFE  QIGSSAM YKRNPMRSER CSLAR LM+L  + L TAS QW ERTLDDSANRR
Sbjct:   285 EEPFEKQQIGSSAMPYKRNPMRSERCCSLARHLMTLIMDPLQTASVQWFERTLDDSANRR 344

Query:   170 LTLSESFLTTDCLLITLQNVLEGLVVYPK 198
             + L+E+FLT D +L TLQN+ EGLVVYPK
Sbjct:   345 ICLAEAFLTADAILNTLQNISEGLVVYPK 373

GO:0009152 "purine ribonucleotide biosynthetic process" evidence=IEA

GO:0004018 "N6-(1,2-dicarboxyethyl)AMP AMP-lyase (fumarate-forming) activity" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database

ID	Length	Definition	E-value
Query	486
cd03302	436	cd03302, Adenylsuccinate_lyase_2, Adenylsuccinate	3e-85
cd03302	436	cd03302, Adenylsuccinate_lyase_2, Adenylsuccinate	5e-73
cd01595	381	cd01595, Adenylsuccinate_lyase_like, Adenylsuccina	1e-48
PRK08937	216	PRK08937, PRK08937, adenylosuccinate lyase; Provis	1e-40
cd01595	381	cd01595, Adenylsuccinate_lyase_like, Adenylsuccina	2e-39
COG0015	438	COG0015, PurB, Adenylosuccinate lyase [Nucleotide	2e-39
cd03302	436	cd03302, Adenylsuccinate_lyase_2, Adenylsuccinate	1e-38
TIGR00928	435	TIGR00928, purB, adenylosuccinate lyase	5e-34
cd01334	325	cd01334, Lyase_I, Lyase class I family; a group of	1e-31
COG0015	438	COG0015, PurB, Adenylosuccinate lyase [Nucleotide	1e-30
PRK08937	216	PRK08937, PRK08937, adenylosuccinate lyase; Provis	2e-28
cd01360	387	cd01360, Adenylsuccinate_lyase_1, Adenylsuccinate	1e-26
TIGR00928	435	TIGR00928, purB, adenylosuccinate lyase	5e-26
cd01334	325	cd01334, Lyase_I, Lyase class I family; a group of	5e-25
PRK08540	449	PRK08540, PRK08540, adenylosuccinate lyase; Review	1e-20
PRK08937	216	PRK08937, PRK08937, adenylosuccinate lyase; Provis	5e-20
cd01594	231	cd01594, Lyase_I_like, Lyase class I_like superfam	1e-19
cd01595	381	cd01595, Adenylsuccinate_lyase_like, Adenylsuccina	3e-18
PRK08470	442	PRK08470, PRK08470, adenylosuccinate lyase; Provis	8e-18
PRK07380	431	PRK07380, PRK07380, adenylosuccinate lyase; Provis	2e-17
cd01594	231	cd01594, Lyase_I_like, Lyase class I_like superfam	2e-16
cd01360	387	cd01360, Adenylsuccinate_lyase_1, Adenylsuccinate	6e-16
TIGR00928	435	TIGR00928, purB, adenylosuccinate lyase	8e-16
COG0015	438	COG0015, PurB, Adenylosuccinate lyase [Nucleotide	1e-15
PRK08540	449	PRK08540, PRK08540, adenylosuccinate lyase; Review	8e-14
PRK07492	435	PRK07492, PRK07492, adenylosuccinate lyase; Provis	3e-13
cd01597	437	cd01597, pCLME, prokaryotic 3-carboxy-cis,cis-muco	4e-13
PRK06390	451	PRK06390, PRK06390, adenylosuccinate lyase; Provis	9e-12
cd03302	436	cd03302, Adenylsuccinate_lyase_2, Adenylsuccinate	2e-11
PRK07380	431	PRK07380, PRK07380, adenylosuccinate lyase; Provis	3e-11
PRK07492	435	PRK07492, PRK07492, adenylosuccinate lyase; Provis	2e-09
cd01597	437	cd01597, pCLME, prokaryotic 3-carboxy-cis,cis-muco	2e-09
PRK06390	451	PRK06390, PRK06390, adenylosuccinate lyase; Provis	2e-08
cd01360	387	cd01360, Adenylsuccinate_lyase_1, Adenylsuccinate	1e-07
PRK08470	442	PRK08470, PRK08470, adenylosuccinate lyase; Provis	1e-07
smart00998	81	smart00998, ADSL_C, Adenylosuccinate lyase C-termi	1e-07
TIGR02426	338	TIGR02426, protocat_pcaB, 3-carboxy-cis,cis-mucona	1e-06
TIGR02426	338	TIGR02426, protocat_pcaB, 3-carboxy-cis,cis-mucona	1e-06
pfam10397	80	pfam10397, ADSL_C, Adenylosuccinate lyase C-termin	2e-06
PRK05975	351	PRK05975, PRK05975, 3-carboxy-cis,cis-muconate cyc	4e-06
PRK05975	351	PRK05975, PRK05975, 3-carboxy-cis,cis-muconate cyc	4e-06
pfam00206	312	pfam00206, Lyase_1, Lyase	4e-04
pfam00206	312	pfam00206, Lyase_1, Lyase	5e-04
COG0114	462	COG0114, FumC, Fumarase [Energy production and con	6e-04
COG0114	462	COG0114, FumC, Fumarase [Energy production and con	6e-04
PRK12425	464	PRK12425, PRK12425, fumarate hydratase; Provisiona	0.002
PRK12425	464	PRK12425, PRK12425, fumarate hydratase; Provisiona	0.002
cd01597	437	cd01597, pCLME, prokaryotic 3-carboxy-cis,cis-muco	0.004

>gnl|CDD|176471 cd03302, Adenylsuccinate_lyase_2, Adenylsuccinate lyase (ASL)_subgroup 2

 Score =  268 bits (688), Expect = 3e-85
 Identities = 110/190 (57%), Positives = 127/190 (66%), Gaps = 36/190 (18%)

Query: 9   GDGDKVKALDRLVTKKAGFNSSHIITGQTYSRKVDVIVTGVLSSLGASIHKKAGFNSSHI 68
           GD DKV+ALD LVTKKAGF   + +TGQTYSRKVD+ V   LSSLGA+ HK         
Sbjct: 198 GDHDKVEALDELVTKKAGFKKVYPVTGQTYSRKVDIDVLNALSSLGATAHK--------- 248

Query: 69  ITGQTYSRKVDVIVTGVLSSLGASIHKLATDLRLLAHMKEIEEPFESTQIGSSAMAYKRN 128
                                      +ATD+RLLA++KE+EEPFE  QIGSSAM YKRN
Sbjct: 249 ---------------------------IATDIRLLANLKEVEEPFEKGQIGSSAMPYKRN 281

Query: 129 PMRSERLCSLARFLMSLHQNSLATASTQWMERTLDDSANRRLTLSESFLTTDCLLITLQN 188
           PMRSER CSLAR LM+L  N+  TASTQW ERTLDDSANRR+ + E+FL  D +LITLQN
Sbjct: 282 PMRSERCCSLARHLMNLASNAAQTASTQWFERTLDDSANRRIAIPEAFLAADAILITLQN 341

Query: 189 VLEGLVVYPK 198
           + EGLVVYPK
Sbjct: 342 ISEGLVVYPK 351

This subgroup contains mainly eukaryotic proteins similar to ASL, a member of the Lyase class I family. Members of this family for the most part catalyze similar beta-elimination reactions in which a C-N or C-O bond is cleaved with the release of fumarate as one of the products. These proteins are active as tetramers. The four active sites of the homotetrameric enzyme are each formed by residues from three different subunits. ASL catalyzes two steps in the de novo purine biosynthesis: the conversion of 5-aminoimidazole-(N-succinylocarboxamide) ribotide (SAICAR) into 5-aminoimidazole-4-carboxamide ribotide (AICAR) and, the conversion of adenylsuccinate (SAMP) into adenosine monophosphate (AMP). ASL deficiency has been linked to several pathologies including psychomotor retardation with autistic features, epilepsy and muscle wasting. Length = 436

>gnl|CDD|176471 cd03302, Adenylsuccinate_lyase_2, Adenylsuccinate lyase (ASL)_subgroup 2

 Score =  237 bits (606), Expect = 5e-73
 Identities = 91/124 (73%), Positives = 103/124 (83%)

Query: 224 GDGDKVKALDRLVTKKAGFTSSHIITGQTYSRKVDVIVTGVLSSLGASIHKLATDLRLLA 283
           GD DKV+ALD LVTKKAGF   + +TGQTYSRKVD+ V   LSSLGA+ HK+ATD+RLLA
Sbjct: 198 GDHDKVEALDELVTKKAGFKKVYPVTGQTYSRKVDIDVLNALSSLGATAHKIATDIRLLA 257

Query: 284 HMKEIEEPFESTQIGSSAMAYKRNPMRSERLCSLARFLMSLHQNSLATASTQWMERTLDD 343
           ++KE+EEPFE  QIGSSAM YKRNPMRSER CSLAR LM+L  N+  TASTQW ERTLDD
Sbjct: 258 NLKEVEEPFEKGQIGSSAMPYKRNPMRSERCCSLARHLMNLASNAAQTASTQWFERTLDD 317

Query: 344 SANR 347
           SANR
Sbjct: 318 SANR 321

This subgroup contains mainly eukaryotic proteins similar to ASL, a member of the Lyase class I family. Members of this family for the most part catalyze similar beta-elimination reactions in which a C-N or C-O bond is cleaved with the release of fumarate as one of the products. These proteins are active as tetramers. The four active sites of the homotetrameric enzyme are each formed by residues from three different subunits. ASL catalyzes two steps in the de novo purine biosynthesis: the conversion of 5-aminoimidazole-(N-succinylocarboxamide) ribotide (SAICAR) into 5-aminoimidazole-4-carboxamide ribotide (AICAR) and, the conversion of adenylsuccinate (SAMP) into adenosine monophosphate (AMP). ASL deficiency has been linked to several pathologies including psychomotor retardation with autistic features, epilepsy and muscle wasting. Length = 436

>gnl|CDD|176467 cd01595, Adenylsuccinate_lyase_like, Adenylsuccinate lyase (ASL)_like

 Score =  171 bits (435), Expect = 1e-48
 Identities = 57/142 (40%), Positives = 78/142 (54%), Gaps = 4/142 (2%)

Query: 59  KKAGFNSSHIITGQTYSRKVDVIVTGVLSSLGASIHKLATDLRLLAH--MKEIEEPFEST 116
           +K G      IT Q   R     +   L+ +  ++ K+ATD+RLL    + E+EEPFE  
Sbjct: 198 EKLGLKV-PPITTQIEPRDRIAELLSALALIAGTLEKIATDIRLLQRTEIGEVEEPFEKG 256

Query: 117 QIGSSAMAYKRNPMRSERLCSLARFLMSLHQNSLATASTQWMERTLDDSANRRLTLSESF 176
           Q+GSS M +KRNP+ SE +  LAR + +L          QW ER L DS+  R  L ++F
Sbjct: 257 QVGSSTMPHKRNPIDSENIEGLARLVRAL-AAPALENLVQWHERDLSDSSVERNILPDAF 315

Query: 177 LTTDCLLITLQNVLEGLVVYPK 198
           L  D  L  LQ +LEGLVV P+
Sbjct: 316 LLLDAALSRLQGLLEGLVVNPE 337

This group contains ASL, prokaryotic-type 3-carboxy-cis,cis-muconate cycloisomerase (pCMLE), and related proteins. These proteins are members of the Lyase class I family. Members of this family for the most part catalyze similar beta-elimination reactions in which a C-N or C-O bond is cleaved with the release of fumarate as one of the products. These proteins are active as tetramers. The four active sites of the homotetrameric enzyme are each formed by residues from three different subunits. ASL catalyzes two steps in the de novo purine biosynthesis: the conversion of 5-aminoimidazole-(N-succinylocarboxamide) ribotide (SAICAR) into 5-aminoimidazole-4-carboxamide ribotide (AICAR) and; the conversion of adenylsuccinate (SAMP) into adenosine monophosphate (AMP). pCMLE catalyzes the cyclization of 3-carboxy-cis,cis-muconate (3CM) to 4-carboxy-muconolactone, in the beta-ketoadipate pathway. ASL deficiency has been linked to several pathologies including psychomotor retardation with autistic features, epilepsy and muscle wasting. Length = 381

>gnl|CDD|236352 PRK08937, PRK08937, adenylosuccinate lyase; Provisional

 Score =  145 bits (367), Expect = 1e-40
 Identities = 49/116 (42%), Positives = 69/116 (59%), Gaps = 3/116 (2%)

Query: 85  VLSSLGASIHKLATDLRLLAHMK--EIEEPFESTQIGSSAMAYKRNPMRSERLCSLARFL 142
           VL+ +  S+ K A ++RLL   +  E+EEPF   Q GSSAM +KRNP+ SER+  LAR L
Sbjct: 22  VLALIATSLEKFANEIRLLQRSEIREVEEPFAKGQKGSSAMPHKRNPIGSERITGLARVL 81

Query: 143 MSLHQNSLATASTQWMERTLDDSANRRLTLSESFLTTDCLLITLQNVLEGLVVYPK 198
            S +  +       W ER L  S+  R+ L ++FL  D +L    N+LE LVV+P+
Sbjct: 82  RS-YLVTALENVPLWHERDLSHSSAERIALPDAFLALDYILNRFVNILENLVVFPE 136

Length = 216

>gnl|CDD|176467 cd01595, Adenylsuccinate_lyase_like, Adenylsuccinate lyase (ASL)_like

 Score =  146 bits (371), Expect = 2e-39
 Identities = 45/124 (36%), Positives = 64/124 (51%), Gaps = 4/124 (3%)

Query: 226 GDKVKALDRLVTKKAGFTSSHIITGQTYSRKVDVIVTGVLSSLGASIHKLATDLRLLAH- 284
           G K   ++  V +K G      IT Q   R     +   L+ +  ++ K+ATD+RLL   
Sbjct: 186 GPKGPEVEERVAEKLGLKV-PPITTQIEPRDRIAELLSALALIAGTLEKIATDIRLLQRT 244

Query: 285 -MKEIEEPFESTQIGSSAMAYKRNPMRSERLCSLARFLMSLHQNSLATASTQWMERTLDD 343
            + E+EEPFE  Q+GSS M +KRNP+ SE +  LAR + +L          QW ER L D
Sbjct: 245 EIGEVEEPFEKGQVGSSTMPHKRNPIDSENIEGLARLVRAL-AAPALENLVQWHERDLSD 303

Query: 344 SANR 347
           S+  
Sbjct: 304 SSVE 307

This group contains ASL, prokaryotic-type 3-carboxy-cis,cis-muconate cycloisomerase (pCMLE), and related proteins. These proteins are members of the Lyase class I family. Members of this family for the most part catalyze similar beta-elimination reactions in which a C-N or C-O bond is cleaved with the release of fumarate as one of the products. These proteins are active as tetramers. The four active sites of the homotetrameric enzyme are each formed by residues from three different subunits. ASL catalyzes two steps in the de novo purine biosynthesis: the conversion of 5-aminoimidazole-(N-succinylocarboxamide) ribotide (SAICAR) into 5-aminoimidazole-4-carboxamide ribotide (AICAR) and; the conversion of adenylsuccinate (SAMP) into adenosine monophosphate (AMP). pCMLE catalyzes the cyclization of 3-carboxy-cis,cis-muconate (3CM) to 4-carboxy-muconolactone, in the beta-ketoadipate pathway. ASL deficiency has been linked to several pathologies including psychomotor retardation with autistic features, epilepsy and muscle wasting. Length = 381

>gnl|CDD|223094 COG0015, PurB, Adenylosuccinate lyase [Nucleotide transport and metabolism]

 Score =  147 bits (374), Expect = 2e-39
 Identities = 54/132 (40%), Positives = 73/132 (55%), Gaps = 3/132 (2%)

Query: 69  ITGQTYSRKVDVIVTGVLSSLGASIHKLATDLRLLAHMK--EIEEPFESTQIGSSAMAYK 126
           I+ Q   R         L+ L  S+ K A D+RLL   +  E+EEPF   Q+GSSAM +K
Sbjct: 216 ISTQVSPRDRIAEFFSALALLAGSLEKFARDIRLLQRTEVGEVEEPFAKGQVGSSAMPHK 275

Query: 127 RNPMRSERLCSLARFLMSLHQNSLATASTQWMERTLDDSANRRLTLSESFLTTDCLLITL 186
           RNP+ SE +  LAR   +L  ++L      W ER L DS+  R+ L ++F+  D  L  L
Sbjct: 276 RNPIDSENVTGLARVARAL-VSTLLENLVLWHERDLTDSSVERVILPDAFIAADGALNRL 334

Query: 187 QNVLEGLVVYPK 198
            NVLEGL V P+
Sbjct: 335 LNVLEGLEVNPE 346

Length = 438

>gnl|CDD|176471 cd03302, Adenylsuccinate_lyase_2, Adenylsuccinate lyase (ASL)_subgroup 2

 Score =  145 bits (367), Expect = 1e-38
 Identities = 56/74 (75%), Positives = 62/74 (83%)

Query: 412 TLSESFLTTDCLLITLQNVLEGLVVYPKVIQRHIDQELPFMATENIIMAMVKAGGDRQVC 471
            + E+FL  D +LITLQN+ EGLVVYPKVI+RHI QELPFMATENIIMA VKAGGDRQ  
Sbjct: 324 AIPEAFLAADAILITLQNISEGLVVYPKVIERHIRQELPFMATENIIMAAVKAGGDRQDA 383

Query: 472 HEKIRVLSHQAGAQ 485
           HE+IRVLSHQA A 
Sbjct: 384 HERIRVLSHQAAAV 397

This subgroup contains mainly eukaryotic proteins similar to ASL, a member of the Lyase class I family. Members of this family for the most part catalyze similar beta-elimination reactions in which a C-N or C-O bond is cleaved with the release of fumarate as one of the products. These proteins are active as tetramers. The four active sites of the homotetrameric enzyme are each formed by residues from three different subunits. ASL catalyzes two steps in the de novo purine biosynthesis: the conversion of 5-aminoimidazole-(N-succinylocarboxamide) ribotide (SAICAR) into 5-aminoimidazole-4-carboxamide ribotide (AICAR) and, the conversion of adenylsuccinate (SAMP) into adenosine monophosphate (AMP). ASL deficiency has been linked to several pathologies including psychomotor retardation with autistic features, epilepsy and muscle wasting. Length = 436

>gnl|CDD|233192 TIGR00928, purB, adenylosuccinate lyase

 Score =  132 bits (335), Expect = 5e-34
 Identities = 51/132 (38%), Positives = 73/132 (55%), Gaps = 3/132 (2%)

Query: 69  ITGQTYSRKVDVIVTGVLSSLGASIHKLATDLRLLA--HMKEIEEPFESTQIGSSAMAYK 126
           I+ Q   R     +   L+ L  ++ K A D+RLL      E+EEPF   Q+GSSAM +K
Sbjct: 215 ISTQIEPRDRHAELLDALALLATTLEKFAVDIRLLQRTEHFEVEEPFGKGQVGSSAMPHK 274

Query: 127 RNPMRSERLCSLARFLMSLHQNSLATASTQWMERTLDDSANRRLTLSESFLTTDCLLITL 186
           RNP+  E +C LAR + S+   +L      W ER L DS+  R+ L +SF+  D +L T 
Sbjct: 275 RNPIDFENVCGLARVIRSVLSPALENV-PLWHERDLTDSSVERIILPDSFILADIMLKTT 333

Query: 187 QNVLEGLVVYPK 198
             V++ LVV P+
Sbjct: 334 LKVVKKLVVNPE 345

This family consists of adenylosuccinate lyase, the enzyme that catalyzes step 8 in the purine biosynthesis pathway for de novo synthesis of IMP and also the final reaction in the two-step sequence from IMP to AMP [Purines, pyrimidines, nucleosides, and nucleotides, Purine ribonucleotide biosynthesis]. Length = 435

>gnl|CDD|176461 cd01334, Lyase_I, Lyase class I family; a group of proteins which catalyze similar beta-elimination reactions

 Score =  123 bits (311), Expect = 1e-31
 Identities = 45/141 (31%), Positives = 58/141 (41%), Gaps = 5/141 (3%)

Query: 59  KKAGFNSSHIITGQ-TYSRKVDVIVTGVLSSLGASIHKLATDLRLLAH--MKEIEEPFES 115
           +  GF      + Q    R   V +   L+ L  S+ K+A DLRLL+     E+E P   
Sbjct: 187 ELLGFFGPAPNSTQAVSDRDFLVELLSALALLAVSLSKIANDLRLLSSGEFGEVELPDAK 246

Query: 116 TQIGSSAMAYKRNPMRSERLCSLARFLMSLHQNSLATASTQWMERTLDDSANRRLTLSES 175
            Q GSS M  K NP+  E +  LA  ++      L             DS   R  L +S
Sbjct: 247 -QPGSSIMPQKVNPVILELVRGLAGRVIGNLAALLEALKGGP-LEDNVDSPVEREALPDS 304

Query: 176 FLTTDCLLITLQNVLEGLVVY 196
           F   D  L  L  VLEGL V 
Sbjct: 305 FDLLDAALRLLTGVLEGLEVN 325

The Lyase class I family contains class II fumarase, aspartase, adenylosuccinate lyase (ASL), argininosuccinate lyase (ASAL), prokaryotic-type 3-carboxy-cis,cis-muconate cycloisomerase (pCMLE), and related proteins. It belongs to the Lyase_I superfamily. Proteins of this family for the most part catalyze similar beta-elimination reactions in which a C-N or C-O bond is cleaved with the release of fumarate as one of the products. These proteins are active as tetramers. The four active sites of the homotetrameric enzyme are each formed by residues from three different subunits. Length = 325

>gnl|CDD|223094 COG0015, PurB, Adenylosuccinate lyase [Nucleotide transport and metabolism]

 Score =  123 bits (310), Expect = 1e-30
 Identities = 45/124 (36%), Positives = 62/124 (50%), Gaps = 4/124 (3%)

Query: 226 GDKVKALDRLVTKKAGFTSSHIITGQTYSRKVDVIVTGVLSSLGASIHKLATDLRLLAHM 285
           GD    ++  V +K G      I+ Q   R         L+ L  S+ K A D+RLL   
Sbjct: 195 GDLGAEVEERVAEKLGLKP-APISTQVSPRDRIAEFFSALALLAGSLEKFARDIRLLQRT 253

Query: 286 K--EIEEPFESTQIGSSAMAYKRNPMRSERLCSLARFLMSLHQNSLATASTQWMERTLDD 343
           +  E+EEPF   Q+GSSAM +KRNP+ SE +  LAR   +L  ++L      W ER L D
Sbjct: 254 EVGEVEEPFAKGQVGSSAMPHKRNPIDSENVTGLARVARAL-VSTLLENLVLWHERDLTD 312

Query: 344 SANR 347
           S+  
Sbjct: 313 SSVE 316

Length = 438

>gnl|CDD|236352 PRK08937, PRK08937, adenylosuccinate lyase; Provisional

 Score =  111 bits (280), Expect = 2e-28
 Identities = 36/86 (41%), Positives = 49/86 (56%), Gaps = 3/86 (3%)

Query: 264 VLSSLGASIHKLATDLRLLAHMK--EIEEPFESTQIGSSAMAYKRNPMRSERLCSLARFL 321
           VL+ +  S+ K A ++RLL   +  E+EEPF   Q GSSAM +KRNP+ SER+  LAR L
Sbjct: 22  VLALIATSLEKFANEIRLLQRSEIREVEEPFAKGQKGSSAMPHKRNPIGSERITGLARVL 81

Query: 322 MSLHQNSLATASTQWMERTLDDSANR 347
            S +  +       W ER L  S+  
Sbjct: 82  RS-YLVTALENVPLWHERDLSHSSAE 106

Length = 216

>gnl|CDD|176464 cd01360, Adenylsuccinate_lyase_1, Adenylsuccinate lyase (ASL)_subgroup 1

 Score =  110 bits (277), Expect = 1e-26
 Identities = 45/117 (38%), Positives = 69/117 (58%), Gaps = 3/117 (2%)

Query: 85  VLSSLGASIHKLATDLRLL--AHMKEIEEPFESTQIGSSAMAYKRNPMRSERLCSLARFL 142
            L+ + +++ K+AT++R L    + E+EEPF   Q GSSAM +KRNP+ SE +C LAR +
Sbjct: 222 TLALIASTLEKIATEIRHLQRTEVLEVEEPFSKGQKGSSAMPHKRNPILSENICGLARVI 281

Query: 143 MSLHQNSLATASTQWMERTLDDSANRRLTLSESFLTTDCLLITLQNVLEGLVVYPKE 199
            S    +L      W ER +  S+  R+ L ++ +  D +L  +  VLE LVVYP+ 
Sbjct: 282 RSNVIPALENV-ALWHERDISHSSVERVILPDATILLDYILRRMTRVLENLVVYPEN 337

This subgroup contains bacterial and archeal proteins similar to ASL, a member of the Lyase class I family. Members of this family for the most part catalyze similar beta-elimination reactions in which a C-N or C-O bond is cleaved with the release of fumarate as one of the products. These proteins are active as tetramers. The four active sites of the homotetrameric enzyme are each formed by residues from three different subunits. ASL catalyzes two steps in the de novo purine biosynthesis: the conversion of 5-aminoimidazole-(N-succinylocarboxamide) ribotide (SAICAR) into 5-aminoimidazole-4-carboxamide ribotide (AICAR) and, the conversion of adenylsuccinate (SAMP) into adenosine monophosphate (AMP). Length = 387

>gnl|CDD|233192 TIGR00928, purB, adenylosuccinate lyase

 Score =  109 bits (275), Expect = 5e-26
 Identities = 44/122 (36%), Positives = 62/122 (50%), Gaps = 4/122 (3%)

Query: 226 GDKVKALDRLVTKKAGFTSSHIITGQTYSRKVDVIVTGVLSSLGASIHKLATDLRLLA-- 283
              V+ ++  VT+  G     I T Q   R     +   L+ L  ++ K A D+RLL   
Sbjct: 194 YPLVEEVEERVTEFLGLKPVPIST-QIEPRDRHAELLDALALLATTLEKFAVDIRLLQRT 252

Query: 284 HMKEIEEPFESTQIGSSAMAYKRNPMRSERLCSLARFLMSLHQNSLATASTQWMERTLDD 343
              E+EEPF   Q+GSSAM +KRNP+  E +C LAR + S+   +L      W ER L D
Sbjct: 253 EHFEVEEPFGKGQVGSSAMPHKRNPIDFENVCGLARVIRSVLSPALENV-PLWHERDLTD 311

Query: 344 SA 345
           S+
Sbjct: 312 SS 313

This family consists of adenylosuccinate lyase, the enzyme that catalyzes step 8 in the purine biosynthesis pathway for de novo synthesis of IMP and also the final reaction in the two-step sequence from IMP to AMP [Purines, pyrimidines, nucleosides, and nucleotides, Purine ribonucleotide biosynthesis]. Length = 435

>gnl|CDD|176461 cd01334, Lyase_I, Lyase class I family; a group of proteins which catalyze similar beta-elimination reactions

 Score =  104 bits (263), Expect = 5e-25
 Identities = 33/122 (27%), Positives = 45/122 (36%), Gaps = 5/122 (4%)

Query: 229 VKALDRLVTKKAGFTSSHIITGQ-TYSRKVDVIVTGVLSSLGASIHKLATDLRLLAH--M 285
                  V +  GF      + Q    R   V +   L+ L  S+ K+A DLRLL+    
Sbjct: 178 PPIDRERVAELLGFFGPAPNSTQAVSDRDFLVELLSALALLAVSLSKIANDLRLLSSGEF 237

Query: 286 KEIEEPFESTQIGSSAMAYKRNPMRSERLCSLARFLMSLHQNSLATASTQWMERTLDDSA 345
            E+E P    Q GSS M  K NP+  E +  LA  ++      L             DS 
Sbjct: 238 GEVELPDAK-QPGSSIMPQKVNPVILELVRGLAGRVIGNLAALLEALKGGP-LEDNVDSP 295

Query: 346 NR 347
             
Sbjct: 296 VE 297

The Lyase class I family contains class II fumarase, aspartase, adenylosuccinate lyase (ASL), argininosuccinate lyase (ASAL), prokaryotic-type 3-carboxy-cis,cis-muconate cycloisomerase (pCMLE), and related proteins. It belongs to the Lyase_I superfamily. Proteins of this family for the most part catalyze similar beta-elimination reactions in which a C-N or C-O bond is cleaved with the release of fumarate as one of the products. These proteins are active as tetramers. The four active sites of the homotetrameric enzyme are each formed by residues from three different subunits. Length = 325

>gnl|CDD|236283 PRK08540, PRK08540, adenylosuccinate lyase; Reviewed

 Score = 93.9 bits (234), Expect = 1e-20
 Identities = 45/136 (33%), Positives = 70/136 (51%), Gaps = 11/136 (8%)

Query: 69  ITGQTYSRKVDVIVTGVLSSLGASIHKLATDLRLL--AHMKEIEEPFESTQIGSSAMAYK 126
           I+ Q   R         L+++  ++ K+  ++R L    + E+EE F   Q+GSS M +K
Sbjct: 221 ISNQVIQRDRHAEFMMFLANIATTLDKIGLEIRNLQRTEIGEVEEEFGKKQVGSSTMPHK 280

Query: 127 RNPMRSERLCSLARFLMSL----HQNSLATASTQWMERTLDDSANRRLTLSESFLTTDCL 182
           RNP+ SE++C LAR + S       N     +  W ER L +S+  R+   ES + TD +
Sbjct: 281 RNPITSEQICGLARVVRSNVEPALLN-----NPLWDERDLTNSSCERIIFPESCVLTDHI 335

Query: 183 LITLQNVLEGLVVYPK 198
           L  +  VLEGL   P+
Sbjct: 336 LKLMIKVLEGLRFNPE 351

Length = 449

>gnl|CDD|236352 PRK08937, PRK08937, adenylosuccinate lyase; Provisional

 Score = 88.2 bits (219), Expect = 5e-20
 Identities = 28/70 (40%), Positives = 47/70 (67%)

Query: 413 LSESFLTTDCLLITLQNVLEGLVVYPKVIQRHIDQELPFMATENIIMAMVKAGGDRQVCH 472
           L ++FL  D +L    N+LE LVV+P+ I+R++D+ L F+ATE +++ +V+ G  R+  H
Sbjct: 110 LPDAFLALDYILNRFVNILENLVVFPENIERNLDKTLGFIATERVLLELVEKGMGREEAH 169

Query: 473 EKIRVLSHQA 482
           E IR  + +A
Sbjct: 170 ELIREKAMEA 179

Length = 216

>gnl|CDD|176466 cd01594, Lyase_I_like, Lyase class I_like superfamily: contains the lyase class I family, histidine ammonia-lyase and phenylalanine ammonia-lyase, which catalyze similar beta-elimination reactions

 Score = 87.3 bits (217), Expect = 1e-19
 Identities = 33/103 (32%), Positives = 47/103 (45%), Gaps = 3/103 (2%)

Query: 80  VIVTGVLSSLGASIHKLATDLRLLAHMK--EIEEPFESTQIGSSAMAYKRNPMRSERLCS 137
                 L+   A + K+A DLRLL   +  E+ EPF   Q GSS M  K NP+ +E +  
Sbjct: 123 AEALDALALAAAHLSKIAEDLRLLLSGEFGELGEPFLPGQPGSSIMPQKVNPVAAELVRG 182

Query: 138 LARFLMSLHQNSLATASTQWMERTLDDSANRRLTLSESFLTTD 180
           LA  ++      L        ER  +DS + R  L++S L   
Sbjct: 183 LAGLVIGNLVAVLTALK-GGPERDNEDSPSMREILADSLLLLI 224

Lyase class I_like superfamily of enzymes that catalyze beta-elimination reactions and are active as homotetramers. The four active sites of the homotetrameric enzyme are each formed by residues from three different subunits. This superfamily contains the lyase class I family, histidine ammonia-lyase and phenylalanine ammonia-lyase. The lyase class I family comprises proteins similar to class II fumarase, aspartase, adenylosuccinate lyase, argininosuccinate lyase, and 3-carboxy-cis, cis-muconate lactonizing enzyme which, for the most part catalyze similar beta-elimination reactions in which a C-N or C-O bond is cleaved with the release of fumarate as one of the products. Histidine or phenylalanine ammonia-lyase catalyze a beta-elimination of ammonia from histidine and phenylalanine, respectively. Length = 231

>gnl|CDD|176467 cd01595, Adenylsuccinate_lyase_like, Adenylsuccinate lyase (ASL)_like

 Score = 86.0 bits (214), Expect = 3e-18
 Identities = 24/69 (34%), Positives = 42/69 (60%)

Query: 412 TLSESFLTTDCLLITLQNVLEGLVVYPKVIQRHIDQELPFMATENIIMAMVKAGGDRQVC 471
            L ++FL  D  L  LQ +LEGLVV P+ ++R++D     + +E ++MA+ K G  RQ  
Sbjct: 310 ILPDAFLLLDAALSRLQGLLEGLVVNPERMRRNLDLTWGLILSEAVMMALAKKGLGRQEA 369

Query: 472 HEKIRVLSH 480
           +E ++  ++
Sbjct: 370 YELVKEENY 378

This group contains ASL, prokaryotic-type 3-carboxy-cis,cis-muconate cycloisomerase (pCMLE), and related proteins. These proteins are members of the Lyase class I family. Members of this family for the most part catalyze similar beta-elimination reactions in which a C-N or C-O bond is cleaved with the release of fumarate as one of the products. These proteins are active as tetramers. The four active sites of the homotetrameric enzyme are each formed by residues from three different subunits. ASL catalyzes two steps in the de novo purine biosynthesis: the conversion of 5-aminoimidazole-(N-succinylocarboxamide) ribotide (SAICAR) into 5-aminoimidazole-4-carboxamide ribotide (AICAR) and; the conversion of adenylsuccinate (SAMP) into adenosine monophosphate (AMP). pCMLE catalyzes the cyclization of 3-carboxy-cis,cis-muconate (3CM) to 4-carboxy-muconolactone, in the beta-ketoadipate pathway. ASL deficiency has been linked to several pathologies including psychomotor retardation with autistic features, epilepsy and muscle wasting. Length = 381

>gnl|CDD|181437 PRK08470, PRK08470, adenylosuccinate lyase; Provisional

 Score = 85.2 bits (211), Expect = 8e-18
 Identities = 51/136 (37%), Positives = 74/136 (54%), Gaps = 8/136 (5%)

Query: 65  SSHIITGQTYSRKVDVIVTGVLSSLGASIHKLATDLRLLAHMK--EIEEPFESTQIGSSA 122
           S+ +I    Y+R     +   L+ L +S  K+A  +R L   +  E EE F   Q GSSA
Sbjct: 210 SNQVIQRDRYAR-----LASALALLASSCEKIAVAIRHLQRTEVYEAEEYFSKGQKGSSA 264

Query: 123 MAYKRNPMRSERLCSLARFLMSLHQNSLATASTQWMERTLDDSANRRLTLSESFLTTDCL 182
           M +KRNP+ SE +  L R + S    +L   +  W ER +  S+  R  L ++F+TTD +
Sbjct: 265 MPHKRNPVLSENITGLCRVIRSFATPALENVAL-WHERDISHSSVERFILPDAFITTDFM 323

Query: 183 LITLQNVLEGLVVYPK 198
           L  L NV+E LVVYP+
Sbjct: 324 LHRLNNVIENLVVYPE 339

Length = 442

>gnl|CDD|180954 PRK07380, PRK07380, adenylosuccinate lyase; Provisional

 Score = 83.9 bits (208), Expect = 2e-17
 Identities = 45/119 (37%), Positives = 69/119 (57%), Gaps = 11/119 (9%)

Query: 86  LSSLGASIHKLATDLRLLAHMK--EIEEPFESTQIGSSAMAYKRNPMRSERLCSLARFLM 143
           L+ +GAS+ + AT++R L      E+EE F   Q GSSAM +KRNP+RSERL  LAR L 
Sbjct: 226 LALVGASLERFATEIRNLQRTDVLEVEEYFAKGQKGSSAMPHKRNPIRSERLSGLARVL- 284

Query: 144 SLHQNSLATASTQ----WMERTLDDSANRRLTLSESFLTTDCLLITLQNVLEGLVVYPK 198
                S A A+ +    W ER +  S+  R+ L +  +    +L  + ++++ L+VYP+
Sbjct: 285 ----RSYAVAALENVALWHERDISHSSVERVMLPDCSILLHFMLREMTDLVKNLLVYPE 339

Length = 431

>gnl|CDD|176466 cd01594, Lyase_I_like, Lyase class I_like superfamily: contains the lyase class I family, histidine ammonia-lyase and phenylalanine ammonia-lyase, which catalyze similar beta-elimination reactions

 Score = 78.4 bits (194), Expect = 2e-16
 Identities = 29/90 (32%), Positives = 41/90 (45%), Gaps = 3/90 (3%)

Query: 259 VIVTGVLSSLGASIHKLATDLRLLAHMK--EIEEPFESTQIGSSAMAYKRNPMRSERLCS 316
                 L+   A + K+A DLRLL   +  E+ EPF   Q GSS M  K NP+ +E +  
Sbjct: 123 AEALDALALAAAHLSKIAEDLRLLLSGEFGELGEPFLPGQPGSSIMPQKVNPVAAELVRG 182

Query: 317 LARFLMSLHQNSLATASTQWMERTLDDSAN 346
           LA  ++      L        ER  +DS +
Sbjct: 183 LAGLVIGNLVAVLTALK-GGPERDNEDSPS 211

Lyase class I_like superfamily of enzymes that catalyze beta-elimination reactions and are active as homotetramers. The four active sites of the homotetrameric enzyme are each formed by residues from three different subunits. This superfamily contains the lyase class I family, histidine ammonia-lyase and phenylalanine ammonia-lyase. The lyase class I family comprises proteins similar to class II fumarase, aspartase, adenylosuccinate lyase, argininosuccinate lyase, and 3-carboxy-cis, cis-muconate lactonizing enzyme which, for the most part catalyze similar beta-elimination reactions in which a C-N or C-O bond is cleaved with the release of fumarate as one of the products. Histidine or phenylalanine ammonia-lyase catalyze a beta-elimination of ammonia from histidine and phenylalanine, respectively. Length = 231

>gnl|CDD|176464 cd01360, Adenylsuccinate_lyase_1, Adenylsuccinate lyase (ASL)_subgroup 1

 Score = 79.1 bits (196), Expect = 6e-16
 Identities = 33/85 (38%), Positives = 50/85 (58%), Gaps = 3/85 (3%)

Query: 264 VLSSLGASIHKLATDLRLL--AHMKEIEEPFESTQIGSSAMAYKRNPMRSERLCSLARFL 321
            L+ + +++ K+AT++R L    + E+EEPF   Q GSSAM +KRNP+ SE +C LAR +
Sbjct: 222 TLALIASTLEKIATEIRHLQRTEVLEVEEPFSKGQKGSSAMPHKRNPILSENICGLARVI 281

Query: 322 MSLHQNSLATASTQWMERTLDDSAN 346
            S    +L      W ER +  S+ 
Sbjct: 282 RSNVIPALENV-ALWHERDISHSSV 305

This subgroup contains bacterial and archeal proteins similar to ASL, a member of the Lyase class I family. Members of this family for the most part catalyze similar beta-elimination reactions in which a C-N or C-O bond is cleaved with the release of fumarate as one of the products. These proteins are active as tetramers. The four active sites of the homotetrameric enzyme are each formed by residues from three different subunits. ASL catalyzes two steps in the de novo purine biosynthesis: the conversion of 5-aminoimidazole-(N-succinylocarboxamide) ribotide (SAICAR) into 5-aminoimidazole-4-carboxamide ribotide (AICAR) and, the conversion of adenylsuccinate (SAMP) into adenosine monophosphate (AMP). Length = 387

>gnl|CDD|233192 TIGR00928, purB, adenylosuccinate lyase

 Score = 78.9 bits (195), Expect = 8e-16
 Identities = 24/71 (33%), Positives = 44/71 (61%)

Query: 412 TLSESFLTTDCLLITLQNVLEGLVVYPKVIQRHIDQELPFMATENIIMAMVKAGGDRQVC 471
            L +SF+  D +L T   V++ LVV P+ I R+++  L  +A+E +++A+V+ G  R+  
Sbjct: 318 ILPDSFILADIMLKTTLKVVKKLVVNPENILRNLELTLGLIASERVLIALVERGMGREEA 377

Query: 472 HEKIRVLSHQA 482
           +E +R L+  A
Sbjct: 378 YEIVRELAMGA 388

This family consists of adenylosuccinate lyase, the enzyme that catalyzes step 8 in the purine biosynthesis pathway for de novo synthesis of IMP and also the final reaction in the two-step sequence from IMP to AMP [Purines, pyrimidines, nucleosides, and nucleotides, Purine ribonucleotide biosynthesis]. Length = 435

>gnl|CDD|223094 COG0015, PurB, Adenylosuccinate lyase [Nucleotide transport and metabolism]

 Score = 78.4 bits (194), Expect = 1e-15
 Identities = 27/74 (36%), Positives = 45/74 (60%)

Query: 412 TLSESFLTTDCLLITLQNVLEGLVVYPKVIQRHIDQELPFMATENIIMAMVKAGGDRQVC 471
            L ++F+  D  L  L NVLEGL V P+ ++R++D  L  +A+E +++A+ K G  R+  
Sbjct: 319 ILPDAFIAADGALNRLLNVLEGLEVNPERMRRNLDLTLGLIASERVMLALRKKGMGREEA 378

Query: 472 HEKIRVLSHQAGAQ 485
           HE +R  + +A  Q
Sbjct: 379 HELVREKAMKAWEQ 392

Length = 438

>gnl|CDD|236283 PRK08540, PRK08540, adenylosuccinate lyase; Reviewed

 Score = 73.1 bits (180), Expect = 8e-14
 Identities = 63/244 (25%), Positives = 94/244 (38%), Gaps = 79/244 (32%)

Query: 248 ITGQTYSRKVDVIVTGVLSSLGASIHKLATDLRLL--AHMKEIEEPFESTQIGSSAMAYK 305
           I+ Q   R         L+++  ++ K+  ++R L    + E+EE F   Q+GSS M +K
Sbjct: 221 ISNQVIQRDRHAEFMMFLANIATTLDKIGLEIRNLQRTEIGEVEEEFGKKQVGSSTMPHK 280

Query: 306 RNPMRSERLCSLARFLMSL----HQNSLATASTQWMERTL-DDSANR--FPTKSVFSCVT 358
           RNP+ SE++C LAR + S       N     +  W ER L + S  R  FP     SCV 
Sbjct: 281 RNPITSEQICGLARVVRSNVEPALLN-----NPLWDERDLTNSSCERIIFPE----SCV- 330

Query: 359 QVKQHGKENDLVDRIRADPYFAPILNQMPTLLDPKSFYGRAPEQQRLSAKGIHTLSESFL 418
                     L D          IL  M  +L+   F    PE  R        L     
Sbjct: 331 ----------LTDH---------ILKLMIKVLEGLRFN---PENIR------RNL----- 357

Query: 419 TTDCLLITLQNVLEGLVVYPKVIQRHIDQELPFMATENIIMAMVKAGGDRQVCHEKIRVL 478
                      + +GL+                MA E +++ + K G  RQ  HE +R  
Sbjct: 358 ----------ELTKGLI----------------MA-EAVMIELAKRGMGRQEAHELVRQA 390

Query: 479 SHQA 482
           + +A
Sbjct: 391 AMKA 394

Length = 449

>gnl|CDD|181000 PRK07492, PRK07492, adenylosuccinate lyase; Provisional

 Score = 71.2 bits (175), Expect = 3e-13
 Identities = 45/123 (36%), Positives = 65/123 (52%), Gaps = 20/123 (16%)

Query: 84  GVLSSLGASIHKLATDLRLLAHMK-----EIEEPFESTQIGSSAMAYKRNPMRSERLCSL 138
           GV++S   SI +LA ++R   H++     E EE F   Q GSSAM +KRNP+ +E L  L
Sbjct: 230 GVIAS---SIERLAIEIR---HLQRTEVLEAEEFFSPGQKGSSAMPHKRNPVLTENLTGL 283

Query: 139 ARFLMSLHQNSLATASTQ----WMERTLDDSANRRLTLSESFLTTDCLLITLQNVLEGLV 194
           AR +      S    + +    W ER +  S+  R+   ++ +T D  L  L  V+E LV
Sbjct: 284 ARLV-----RSYVVPAMENVALWHERDISHSSVERMIGPDATITLDFALNRLAGVIEKLV 338

Query: 195 VYP 197
           VYP
Sbjct: 339 VYP 341

Length = 435

>gnl|CDD|176469 cd01597, pCLME, prokaryotic 3-carboxy-cis,cis-muconate cycloisomerase (CMLE)_like

 Score = 70.7 bits (174), Expect = 4e-13
 Identities = 38/126 (30%), Positives = 55/126 (43%), Gaps = 17/126 (13%)

Query: 82  VTGVLSSLGASIHKLATDLRLLAH--MKEIEEPFESTQIGSSAMAYKRNPMRSERLCSLA 139
           +   L+ L  ++ K+A D+ LL    + E+ EPF   + GSS M +KRNP+  E + +LA
Sbjct: 229 LASFLALLTGTLGKIARDVYLLMQTEIGEVAEPFAKGRGGSSTMPHKRNPVGCELIVALA 288

Query: 140 RFLMSLHQNSLATASTQWM----ERTLDDSANRRL---TLSESFLTTDCLLITLQNVLEG 192
           R +       LA      M    ER   D+         L E FL     L   + +L G
Sbjct: 289 RRV-----PGLAALLLDAMVQEHER---DAGAWHAEWIALPEIFLLASGALEQAEFLLSG 340

Query: 193 LVVYPK 198
           L V   
Sbjct: 341 LEVNED 346

This subgroup contains pCLME and related proteins, and belongs to the Lyase class I family. Members of this family for the most part catalyze similar beta-elimination reactions in which a C-N or C-O bond is cleaved with the release of fumarate as one of the products. These proteins are active as tetramers. The four active sites of the homotetrameric enzyme are each formed by residues from three different subunits. CMLE catalyzes the cyclization of 3-carboxy-cis,cis-muconate (3CM) to 4-carboxy-muconolactone in the beta-ketoadipate pathway. This pathway is responsible for the catabolism of a variety of aromatic compounds into intermediates of the citric cycle in prokaryotic and eukaryotic micro-organisms. Length = 437

>gnl|CDD|235792 PRK06390, PRK06390, adenylosuccinate lyase; Provisional

 Score = 66.5 bits (162), Expect = 9e-12
 Identities = 40/114 (35%), Positives = 66/114 (57%), Gaps = 4/114 (3%)

Query: 85  VLSSLGASIHKLATDLRLLA--HMKEIEEPF-ESTQIGSSAMAYKRNPMRSERLCSLARF 141
           V++ +  ++ K+AT++R L    + E+ E F E +Q+GSS+M  K NP+ SE + SL+RF
Sbjct: 236 VINGISVTLEKIATEIRNLQRPEIDEVSEYFDEESQVGSSSMPSKVNPINSENVVSLSRF 295

Query: 142 LMSLHQNSLATASTQWMERTLDDSANRRLTLSESFLTTDCLLITLQNVLEGLVV 195
           + SL         T W ER L +SA  R T+  + +  D +L  + +VL  L++
Sbjct: 296 IRSLIIPEYEAGVT-WHERDLTNSALERFTIPYASILIDYVLYNMNDVLSHLII 348

Length = 451

>gnl|CDD|176471 cd03302, Adenylsuccinate_lyase_2, Adenylsuccinate lyase (ASL)_subgroup 2

 Score = 65.4 bits (160), Expect = 2e-11
 Identities = 22/40 (55%), Positives = 30/40 (75%)

Query: 359 QVKQHGKENDLVDRIRADPYFAPILNQMPTLLDPKSFYGR 398
            VKQ G +NDL++RI+ D YF PI +++  LLDPK+F GR
Sbjct: 397 VVKQEGGDNDLIERIKNDAYFKPIWDELDALLDPKTFIGR 436

This subgroup contains mainly eukaryotic proteins similar to ASL, a member of the Lyase class I family. Members of this family for the most part catalyze similar beta-elimination reactions in which a C-N or C-O bond is cleaved with the release of fumarate as one of the products. These proteins are active as tetramers. The four active sites of the homotetrameric enzyme are each formed by residues from three different subunits. ASL catalyzes two steps in the de novo purine biosynthesis: the conversion of 5-aminoimidazole-(N-succinylocarboxamide) ribotide (SAICAR) into 5-aminoimidazole-4-carboxamide ribotide (AICAR) and, the conversion of adenylsuccinate (SAMP) into adenosine monophosphate (AMP). ASL deficiency has been linked to several pathologies including psychomotor retardation with autistic features, epilepsy and muscle wasting. Length = 436

>gnl|CDD|180954 PRK07380, PRK07380, adenylosuccinate lyase; Provisional

 Score = 65.1 bits (159), Expect = 3e-11
 Identities = 38/88 (43%), Positives = 51/88 (57%), Gaps = 11/88 (12%)

Query: 265 LSSLGASIHKLATDLRLLAHMK--EIEEPFESTQIGSSAMAYKRNPMRSERLCSLARFLM 322
           L+ +GAS+ + AT++R L      E+EE F   Q GSSAM +KRNP+RSERL  LAR L 
Sbjct: 226 LALVGASLERFATEIRNLQRTDVLEVEEYFAKGQKGSSAMPHKRNPIRSERLSGLARVL- 284

Query: 323 SLHQNSLATASTQ----WMERTLDDSAN 346
                S A A+ +    W ER +  S+ 
Sbjct: 285 ----RSYAVAALENVALWHERDISHSSV 308

Length = 431

>gnl|CDD|181000 PRK07492, PRK07492, adenylosuccinate lyase; Provisional

 Score = 58.8 bits (143), Expect = 2e-09
 Identities = 29/66 (43%), Positives = 40/66 (60%), Gaps = 11/66 (16%)

Query: 263 GVLSSLGASIHKLATDLRLLAHMK-----EIEEPFESTQIGSSAMAYKRNPMRSERLCSL 317
           GV++S   SI +LA ++R   H++     E EE F   Q GSSAM +KRNP+ +E L  L
Sbjct: 230 GVIAS---SIERLAIEIR---HLQRTEVLEAEEFFSPGQKGSSAMPHKRNPVLTENLTGL 283

Query: 318 ARFLMS 323
           AR + S
Sbjct: 284 ARLVRS 289

Length = 435

>gnl|CDD|176469 cd01597, pCLME, prokaryotic 3-carboxy-cis,cis-muconate cycloisomerase (CMLE)_like

 Score = 59.2 bits (144), Expect = 2e-09
 Identities = 24/66 (36%), Positives = 38/66 (57%), Gaps = 2/66 (3%)

Query: 261 VTGVLSSLGASIHKLATDLRLLAH--MKEIEEPFESTQIGSSAMAYKRNPMRSERLCSLA 318
           +   L+ L  ++ K+A D+ LL    + E+ EPF   + GSS M +KRNP+  E + +LA
Sbjct: 229 LASFLALLTGTLGKIARDVYLLMQTEIGEVAEPFAKGRGGSSTMPHKRNPVGCELIVALA 288

Query: 319 RFLMSL 324
           R +  L
Sbjct: 289 RRVPGL 294

This subgroup contains pCLME and related proteins, and belongs to the Lyase class I family. Members of this family for the most part catalyze similar beta-elimination reactions in which a C-N or C-O bond is cleaved with the release of fumarate as one of the products. These proteins are active as tetramers. The four active sites of the homotetrameric enzyme are each formed by residues from three different subunits. CMLE catalyzes the cyclization of 3-carboxy-cis,cis-muconate (3CM) to 4-carboxy-muconolactone in the beta-ketoadipate pathway. This pathway is responsible for the catabolism of a variety of aromatic compounds into intermediates of the citric cycle in prokaryotic and eukaryotic micro-organisms. Length = 437

>gnl|CDD|235792 PRK06390, PRK06390, adenylosuccinate lyase; Provisional

 Score = 55.7 bits (134), Expect = 2e-08
 Identities = 37/97 (38%), Positives = 56/97 (57%), Gaps = 7/97 (7%)

Query: 264 VLSSLGASIHKLATDLRLLA--HMKEIEEPF-ESTQIGSSAMAYKRNPMRSERLCSLARF 320
           V++ +  ++ K+AT++R L    + E+ E F E +Q+GSS+M  K NP+ SE + SL+RF
Sbjct: 236 VINGISVTLEKIATEIRNLQRPEIDEVSEYFDEESQVGSSSMPSKVNPINSENVVSLSRF 295

Query: 321 LMSLHQNSLATASTQWMERTLDDSA-NRF--PTKSVF 354
           + SL         T W ER L +SA  RF  P  S+ 
Sbjct: 296 IRSLIIPEYEAGVT-WHERDLTNSALERFTIPYASIL 331

Length = 451

>gnl|CDD|176464 cd01360, Adenylsuccinate_lyase_1, Adenylsuccinate lyase (ASL)_subgroup 1

 Score = 53.7 bits (130), Expect = 1e-07
 Identities = 17/65 (26%), Positives = 40/65 (61%)

Query: 412 TLSESFLTTDCLLITLQNVLEGLVVYPKVIQRHIDQELPFMATENIIMAMVKAGGDRQVC 471
            L ++ +  D +L  +  VLE LVVYP+ ++R+++     + ++ +++A+V+ G  R+  
Sbjct: 309 ILPDATILLDYILRRMTRVLENLVVYPENMRRNLNLTKGLIFSQRVLLALVEKGMSREEA 368

Query: 472 HEKIR 476
           +E ++
Sbjct: 369 YEIVQ 373

This subgroup contains bacterial and archeal proteins similar to ASL, a member of the Lyase class I family. Members of this family for the most part catalyze similar beta-elimination reactions in which a C-N or C-O bond is cleaved with the release of fumarate as one of the products. These proteins are active as tetramers. The four active sites of the homotetrameric enzyme are each formed by residues from three different subunits. ASL catalyzes two steps in the de novo purine biosynthesis: the conversion of 5-aminoimidazole-(N-succinylocarboxamide) ribotide (SAICAR) into 5-aminoimidazole-4-carboxamide ribotide (AICAR) and, the conversion of adenylsuccinate (SAMP) into adenosine monophosphate (AMP). Length = 387

>gnl|CDD|181437 PRK08470, PRK08470, adenylosuccinate lyase; Provisional

 Score = 53.6 bits (129), Expect = 1e-07
 Identities = 41/124 (33%), Positives = 60/124 (48%), Gaps = 13/124 (10%)

Query: 232 LDRLVTKKAGFT----SSHIITGQTYSRKVDVIVTGVLSSLGASIHKLATDLRLLAHMK- 286
           L+ LV ++ G      S+ +I    Y+R     +   L+ L +S  K+A  +R L   + 
Sbjct: 194 LEELVCEELGLKPAPVSNQVIQRDRYAR-----LASALALLASSCEKIAVAIRHLQRTEV 248

Query: 287 -EIEEPFESTQIGSSAMAYKRNPMRSERLCSLARFLMSLHQNSLATASTQWMERTLD-DS 344
            E EE F   Q GSSAM +KRNP+ SE +  L R + S    +L   +  W ER +   S
Sbjct: 249 YEAEEYFSKGQKGSSAMPHKRNPVLSENITGLCRVIRSFATPALENVAL-WHERDISHSS 307

Query: 345 ANRF 348
             RF
Sbjct: 308 VERF 311

Length = 442

>gnl|CDD|198066 smart00998, ADSL_C, Adenylosuccinate lyase C-terminus

 Score = 49.0 bits (118), Expect = 1e-07
 Identities = 7/37 (18%), Positives = 21/37 (56%)

Query: 449 LPFMATENIIMAMVKAGGDRQVCHEKIRVLSHQAGAQ 485
              + +E +++A+V+ G  R+  +E ++  + +A  +
Sbjct: 1   GGLIFSERVLLALVEKGLGREEAYELVQRAAMKAWEE 37

Adenylosuccinate lyase catalyses two steps in the synthesis of purine nucleotides: the conversion of succinylaminoimidazole-carboxamide ribotide into aminoimidazole-carboxamide ribotide (the fifth step of de novo IMP biosynthesis); the formation of adenosine monophosphate (AMP) from adenylosuccinate (the final step in the synthesis of AMP from IMP). This entry represents the C-terminal, seven alpha-helical, domain of adenylosuccinate lyase. Length = 81

>gnl|CDD|233863 TIGR02426, protocat_pcaB, 3-carboxy-cis,cis-muconate cycloisomerase

 Score = 50.1 bits (120), Expect = 1e-06
 Identities = 29/93 (31%), Positives = 44/93 (47%), Gaps = 14/93 (15%)

Query: 79  DVIVT--GVLSSLGASIHKLATDLRLLAHMKEIEEPFESTQIGSSAMAYKRNPMRSERLC 136
           D I      L+ +  ++ K+A D+ LL+   E+ E FE+   GSSAM +KRNP+ +  L 
Sbjct: 224 DRIAEFGSALALVAGALGKIAGDIALLSQT-EVGEVFEAGGGGSSAMPHKRNPVGAALLA 282

Query: 137 SLARF-----------LMSLHQNSLATASTQWM 158
           + AR            L   H+ SL     +W 
Sbjct: 283 AAARRVPGLAATLHAALPQEHERSLGGWHAEWE 315

Members of this family are 3-carboxy-cis,cis-muconate cycloisomerase, the enzyme the catalyzes the second step in the protocatechuate degradation to beta-ketoadipate and then to succinyl-CoA and acetyl-CoA. 4-hydroxybenzoate, 3-hydroxybenzoate, and vanillate all can be converted in one step to protocatechuate. All members of the seed alignment for this model were chosen from within protocatechuate degradation operons of at least three genes of the pathway, from genomes with the complete pathway through beta-ketoadipate [Energy metabolism, Other]. Length = 338

>gnl|CDD|233863 TIGR02426, protocat_pcaB, 3-carboxy-cis,cis-muconate cycloisomerase

 Score = 50.1 bits (120), Expect = 1e-06
 Identities = 29/93 (31%), Positives = 44/93 (47%), Gaps = 14/93 (15%)

Query: 258 DVIVT--GVLSSLGASIHKLATDLRLLAHMKEIEEPFESTQIGSSAMAYKRNPMRSERLC 315
           D I      L+ +  ++ K+A D+ LL+   E+ E FE+   GSSAM +KRNP+ +  L 
Sbjct: 224 DRIAEFGSALALVAGALGKIAGDIALLSQT-EVGEVFEAGGGGSSAMPHKRNPVGAALLA 282

Query: 316 SLARF-----------LMSLHQNSLATASTQWM 337
           + AR            L   H+ SL     +W 
Sbjct: 283 AAARRVPGLAATLHAALPQEHERSLGGWHAEWE 315

Members of this family are 3-carboxy-cis,cis-muconate cycloisomerase, the enzyme the catalyzes the second step in the protocatechuate degradation to beta-ketoadipate and then to succinyl-CoA and acetyl-CoA. 4-hydroxybenzoate, 3-hydroxybenzoate, and vanillate all can be converted in one step to protocatechuate. All members of the seed alignment for this model were chosen from within protocatechuate degradation operons of at least three genes of the pathway, from genomes with the complete pathway through beta-ketoadipate [Energy metabolism, Other]. Length = 338

>gnl|CDD|220731 pfam10397, ADSL_C, Adenylosuccinate lyase C-terminus

 Score = 45.1 bits (108), Expect = 2e-06
 Identities = 6/36 (16%), Positives = 20/36 (55%)

Query: 450 PFMATENIIMAMVKAGGDRQVCHEKIRVLSHQAGAQ 485
             + +E +++A+ + G  R+  +E ++  + +A  +
Sbjct: 1   GLIMSERVLLALAEKGLGREEAYELVQRAAMKAWEE 36

This is the C-terminal seven alpha helices of the structure whose full length represents the enzyme adenylosuccinate lyase. This sequence lies C-terminal to the conserved motif necessary for beta-elimination reactions, Adenylosuccinate lyase catalyzes two steps in the synthesis of purine nucleotides: the conversion of succinylaminoimidazole-carboxamide ribotide into aminoimidazole-carboxamide ribotide, the eighth step of the de novo pathway, and the formation of adenosine monophosphate (AMP) from adenylosuccinate, the second step in the conversion of inosine monophosphate into AMP. Length = 80

>gnl|CDD|168324 PRK05975, PRK05975, 3-carboxy-cis,cis-muconate cycloisomerase; Provisional

 Score = 48.5 bits (116), Expect = 4e-06
 Identities = 29/76 (38%), Positives = 40/76 (52%), Gaps = 10/76 (13%)

Query: 79  DVIVT--GVLSSLGASIHKLATDLRLLAHM-KEIEEPFESTQIGSSAMAYKRNPMRSERL 135
           D I     +LS +  S+ K   D+ L+A    EI     S   GSSAM +K+NP+ +E L
Sbjct: 232 DFIADFAHLLSLVTGSLGKFGQDIALMAQAGDEISL---SGGGGSSAMPHKQNPVAAETL 288

Query: 136 CSLARF----LMSLHQ 147
            +LARF    +  LHQ
Sbjct: 289 VTLARFNATQVSGLHQ 304

Length = 351

>gnl|CDD|168324 PRK05975, PRK05975, 3-carboxy-cis,cis-muconate cycloisomerase; Provisional

 Score = 48.5 bits (116), Expect = 4e-06
 Identities = 29/76 (38%), Positives = 40/76 (52%), Gaps = 10/76 (13%)

Query: 258 DVIVT--GVLSSLGASIHKLATDLRLLAHM-KEIEEPFESTQIGSSAMAYKRNPMRSERL 314
           D I     +LS +  S+ K   D+ L+A    EI     S   GSSAM +K+NP+ +E L
Sbjct: 232 DFIADFAHLLSLVTGSLGKFGQDIALMAQAGDEISL---SGGGGSSAMPHKQNPVAAETL 288

Query: 315 CSLARF----LMSLHQ 326
            +LARF    +  LHQ
Sbjct: 289 VTLARFNATQVSGLHQ 304

Length = 351

>gnl|CDD|215787 pfam00206, Lyase_1, Lyase

 Score = 41.9 bits (99), Expect = 4e-04
 Identities = 27/92 (29%), Positives = 36/92 (39%), Gaps = 6/92 (6%)

Query: 234 RLVTKKAGFTSSHIITG----QTYSRKVDVIVTGVLSSLGASIHKLATDLRLLA--HMKE 287
            L  +   FT   +        T  R   V  +G L+ L   + K A DLRLL+      
Sbjct: 217 LLAKELGFFTGLPVPAPNSFEATSDRDAVVEFSGALALLATHLSKFANDLRLLSSGPFGF 276

Query: 288 IEEPFESTQIGSSAMAYKRNPMRSERLCSLAR 319
           +E      + GSS M  K NP + E L   A 
Sbjct: 277 VELSLPEGEPGSSIMPGKVNPDQLELLRGKAG 308

Length = 312

>gnl|CDD|215787 pfam00206, Lyase_1, Lyase

 Score = 41.9 bits (99), Expect = 5e-04
 Identities = 21/59 (35%), Positives = 27/59 (45%), Gaps = 2/59 (3%)

Query: 84  GVLSSLGASIHKLATDLRLLA--HMKEIEEPFESTQIGSSAMAYKRNPMRSERLCSLAR 140
           G L+ L   + K A DLRLL+      +E      + GSS M  K NP + E L   A 
Sbjct: 250 GALALLATHLSKFANDLRLLSSGPFGFVELSLPEGEPGSSIMPGKVNPDQLELLRGKAG 308

Length = 312

>gnl|CDD|223192 COG0114, FumC, Fumarase [Energy production and conversion]

 Score = 41.8 bits (99), Expect = 6e-04
 Identities = 27/82 (32%), Positives = 41/82 (50%), Gaps = 8/82 (9%)

Query: 80  VIVTGVLSSLGASIHKLATDLRLLAH-----MKEIEEPFESTQIGSSAMAYKRNPMRSER 134
           V  +G L +L  S+ K+A D+R L       + EIE P    + GSS M  K NP + E 
Sbjct: 274 VEASGALRTLAVSLMKIANDIRWLGSGPRCGLGEIELP--ENEPGSSIMPGKVNPTQCEA 331

Query: 135 LCSLARFLMSLHQNSLATASTQ 156
           L  +A  ++     ++A A +Q
Sbjct: 332 LTMVAAQVIGNDA-AIAFAGSQ 352

Length = 462

>gnl|CDD|223192 COG0114, FumC, Fumarase [Energy production and conversion]

 Score = 41.8 bits (99), Expect = 6e-04
 Identities = 27/82 (32%), Positives = 41/82 (50%), Gaps = 8/82 (9%)

Query: 259 VIVTGVLSSLGASIHKLATDLRLLAH-----MKEIEEPFESTQIGSSAMAYKRNPMRSER 313
           V  +G L +L  S+ K+A D+R L       + EIE P    + GSS M  K NP + E 
Sbjct: 274 VEASGALRTLAVSLMKIANDIRWLGSGPRCGLGEIELP--ENEPGSSIMPGKVNPTQCEA 331

Query: 314 LCSLARFLMSLHQNSLATASTQ 335
           L  +A  ++     ++A A +Q
Sbjct: 332 LTMVAAQVIGNDA-AIAFAGSQ 352

Length = 462

>gnl|CDD|171490 PRK12425, PRK12425, fumarate hydratase; Provisional

 Score = 40.3 bits (94), Expect = 0.002
 Identities = 25/65 (38%), Positives = 36/65 (55%), Gaps = 7/65 (10%)

Query: 80  VIVTGVLSSLGASIHKLATDLRLL-----AHMKEIEEPFESTQIGSSAMAYKRNPMRSER 134
           V ++G L +L  ++ K+A DLRLL     A + E+  P  + + GSS M  K NP + E 
Sbjct: 273 VSLSGALKTLAVALMKIANDLRLLGSGPRAGLAEVRLP--ANEPGSSIMPGKVNPTQCEA 330

Query: 135 LCSLA 139
           L  LA
Sbjct: 331 LSMLA 335

Length = 464

>gnl|CDD|171490 PRK12425, PRK12425, fumarate hydratase; Provisional

 Score = 40.3 bits (94), Expect = 0.002
 Identities = 25/65 (38%), Positives = 36/65 (55%), Gaps = 7/65 (10%)

Query: 259 VIVTGVLSSLGASIHKLATDLRLL-----AHMKEIEEPFESTQIGSSAMAYKRNPMRSER 313
           V ++G L +L  ++ K+A DLRLL     A + E+  P  + + GSS M  K NP + E 
Sbjct: 273 VSLSGALKTLAVALMKIANDLRLLGSGPRAGLAEVRLP--ANEPGSSIMPGKVNPTQCEA 330

Query: 314 LCSLA 318
           L  LA
Sbjct: 331 LSMLA 335

Length = 464

>gnl|CDD|176469 cd01597, pCLME, prokaryotic 3-carboxy-cis,cis-muconate cycloisomerase (CMLE)_like

 Score = 39.1 bits (92), Expect = 0.004
 Identities = 18/74 (24%), Positives = 33/74 (44%), Gaps = 1/74 (1%)

Query: 412 TLSESFLTTDCLLITLQNVLEGLVVYPKVIQRHIDQELPFMATENIIMAMVKAGGDRQVC 471
            L E FL     L   + +L GL V    ++ ++D     + +E ++MA+    G RQ  
Sbjct: 319 ALPEIFLLASGALEQAEFLLSGLEVNEDRMRANLDLTGGLILSEAVMMALAPKLG-RQEA 377

Query: 472 HEKIRVLSHQAGAQ 485
           H+ +     +A  +
Sbjct: 378 HDLVYEACMRAVEE 391

This subgroup contains pCLME and related proteins, and belongs to the Lyase class I family. Members of this family for the most part catalyze similar beta-elimination reactions in which a C-N or C-O bond is cleaved with the release of fumarate as one of the products. These proteins are active as tetramers. The four active sites of the homotetrameric enzyme are each formed by residues from three different subunits. CMLE catalyzes the cyclization of 3-carboxy-cis,cis-muconate (3CM) to 4-carboxy-muconolactone in the beta-ketoadipate pathway. This pathway is responsible for the catabolism of a variety of aromatic compounds into intermediates of the citric cycle in prokaryotic and eukaryotic micro-organisms. Length = 437

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	486
COG0165	459	ArgH Argininosuccinate lyase [Amino acid transport	100.0
KOG1316|consensus	464		100.0
PLN02646	474	argininosuccinate lyase	100.0
COG0165	459	ArgH Argininosuccinate lyase [Amino acid transport	100.0
cd03302	436	Adenylsuccinate_lyase_2 Adenylsuccinate lyase (ASL	100.0
PRK08470	442	adenylosuccinate lyase; Provisional	100.0
COG0015	438	PurB Adenylosuccinate lyase [Nucleotide transport	100.0
PRK07492	435	adenylosuccinate lyase; Provisional	100.0
cd01595	381	Adenylsuccinate_lyase_like Adenylsuccinate lyase (	100.0
PRK07380	431	adenylosuccinate lyase; Provisional	100.0
PRK04833	455	argininosuccinate lyase; Provisional	100.0
PRK08540	449	adenylosuccinate lyase; Reviewed	100.0
cd01360	387	Adenylsuccinate_lyase_1 Adenylsuccinate lyase (ASL	100.0
TIGR00928	435	purB adenylosuccinate lyase. This family consists	100.0
PRK12308	614	bifunctional argininosuccinate lyase/N-acetylgluta	100.0
PRK06390	451	adenylosuccinate lyase; Provisional	100.0
cd01360	387	Adenylsuccinate_lyase_1 Adenylsuccinate lyase (ASL	100.0
cd01597	437	pCLME prokaryotic 3-carboxy-cis,cis-muconate cyclo	100.0
PRK06705	502	argininosuccinate lyase; Provisional	100.0
cd01595	381	Adenylsuccinate_lyase_like Adenylsuccinate lyase (	100.0
PRK09053	452	3-carboxy-cis,cis-muconate cycloisomerase; Provisi	100.0
PRK07492	435	adenylosuccinate lyase; Provisional	100.0
PRK07380	431	adenylosuccinate lyase; Provisional	100.0
KOG1316|consensus	464		100.0
PRK06705	502	argininosuccinate lyase; Provisional	100.0
PRK08470	442	adenylosuccinate lyase; Provisional	100.0
TIGR00928	435	purB adenylosuccinate lyase. This family consists	100.0
PRK00855	459	argininosuccinate lyase; Provisional	100.0
PRK02186	887	argininosuccinate lyase; Provisional	100.0
PRK08540	449	adenylosuccinate lyase; Reviewed	100.0
TIGR00838	455	argH argininosuccinate lyase. This model describes	100.0
cd03302	436	Adenylsuccinate_lyase_2 Adenylsuccinate lyase (ASL	100.0
PRK02186	887	argininosuccinate lyase; Provisional	100.0
cd01597	437	pCLME prokaryotic 3-carboxy-cis,cis-muconate cyclo	100.0
cd01359	435	Argininosuccinate_lyase Argininosuccinate lyase (a	100.0
PRK06389	434	argininosuccinate lyase; Provisional	100.0
TIGR00838	455	argH argininosuccinate lyase. This model describes	100.0
PRK00855	459	argininosuccinate lyase; Provisional	99.97
PRK09285	456	adenylosuccinate lyase; Provisional	99.97
PRK00485	464	fumC fumarate hydratase; Reviewed	99.97
PRK09053	452	3-carboxy-cis,cis-muconate cycloisomerase; Provisi	99.97
PRK06390	451	adenylosuccinate lyase; Provisional	99.97
PRK08937	216	adenylosuccinate lyase; Provisional	99.97
cd01334	325	Lyase_I Lyase class I family; a group of proteins	99.97
PRK06389	434	argininosuccinate lyase; Provisional	99.97
KOG2700|consensus	481		99.97
cd01598	425	PurB PurB_like adenylosuccinases (adenylsuccinate	99.97
PRK12273	472	aspA aspartate ammonia-lyase; Provisional	99.97
cd01359	435	Argininosuccinate_lyase Argininosuccinate lyase (a	99.97
KOG2700|consensus	481		99.97
PLN02848	458	adenylosuccinate lyase	99.97
COG0015	438	PurB Adenylosuccinate lyase [Nucleotide transport	99.97
PRK12425	464	fumarate hydratase; Provisional	99.97
cd01357	450	Aspartase Aspartase. This subgroup contains Escher	99.97
TIGR02426	338	protocat_pcaB 3-carboxy-cis,cis-muconate cycloisom	99.97
PRK00485	464	fumC fumarate hydratase; Reviewed	99.96
PRK13353	473	aspartate ammonia-lyase; Provisional	99.96
cd01596	450	Aspartase_like aspartase (L-aspartate ammonia-lyas	99.96
TIGR00979	458	fumC_II fumarate hydratase, class II. Putative fum	99.96
PLN00134	458	fumarate hydratase; Provisional	99.96
PRK09285	456	adenylosuccinate lyase; Provisional	99.96
PRK12425	464	fumarate hydratase; Provisional	99.96
cd01598	425	PurB PurB_like adenylosuccinases (adenylsuccinate	99.96
PLN02848	458	adenylosuccinate lyase	99.96
PLN00134	458	fumarate hydratase; Provisional	99.95
TIGR00979	458	fumC_II fumarate hydratase, class II. Putative fum	99.95
TIGR00839	468	aspA aspartate ammonia-lyase. Fumarate hydratase s	99.95
cd01362	455	Fumarase_classII Class II fumarases. This subgroup	99.95
PRK13353	473	aspartate ammonia-lyase; Provisional	99.95
PRK12273	472	aspA aspartate ammonia-lyase; Provisional	99.95
cd01596	450	Aspartase_like aspartase (L-aspartate ammonia-lyas	99.95
PRK05975	351	3-carboxy-cis,cis-muconate cycloisomerase; Provisi	99.95
cd01357	450	Aspartase Aspartase. This subgroup contains Escher	99.95
PRK14515	479	aspartate ammonia-lyase; Provisional	99.95
cd01362	455	Fumarase_classII Class II fumarases. This subgroup	99.95
PRK14515	479	aspartate ammonia-lyase; Provisional	99.94
TIGR00839	468	aspA aspartate ammonia-lyase. Fumarate hydratase s	99.94
TIGR02426	338	protocat_pcaB 3-carboxy-cis,cis-muconate cycloisom	99.92
PRK04833	455	argininosuccinate lyase; Provisional	99.92
cd01334	325	Lyase_I Lyase class I family; a group of proteins	99.92
COG0114	462	FumC Fumarase [Energy production and conversion]	99.91
PLN02646	474	argininosuccinate lyase	99.91
PRK08937	216	adenylosuccinate lyase; Provisional	99.91
PRK12308	614	bifunctional argininosuccinate lyase/N-acetylgluta	99.91
PF00206	312	Lyase_1: Lyase; InterPro: IPR022761 This entry rep	99.9
PRK05975	351	3-carboxy-cis,cis-muconate cycloisomerase; Provisi	99.9
COG1027	471	AspA Aspartate ammonia-lyase [Amino acid transport	99.89
COG1027	471	AspA Aspartate ammonia-lyase [Amino acid transport	99.87
COG0114	462	FumC Fumarase [Energy production and conversion]	99.84
KOG1317|consensus	487		99.82
PF00206	312	Lyase_1: Lyase; InterPro: IPR022761 This entry rep	99.78
KOG1317|consensus	487		99.67
cd01594	231	Lyase_I_like Lyase class I_like superfamily: conta	99.62
cd01594	231	Lyase_I_like Lyase class I_like superfamily: conta	99.41
PF14698	70	ASL_C2: Argininosuccinate lyase C-terminal; PDB: 1	98.59
PF08328	115	ASL_C: Adenylosuccinate lyase C-terminal; InterPro	97.69
PF10397	81	ADSL_C: Adenylosuccinate lyase C-terminus; InterPr	97.1
PF08328	115	ASL_C: Adenylosuccinate lyase C-terminal; InterPro	85.4

>COG0165 ArgH Argininosuccinate lyase [Amino acid transport and metabolism]

Probab=100.00  E-value=6e-44  Score=370.69  Aligned_cols=213  Identities=19%  Similarity=0.198  Sum_probs=187.8

Q ss_pred             ChhhhhHhccHHHHHHHHHHHhhhcCCCceeecccCcccccchhhhhhhhhhhhHHHHHHcCCCCCC-CcccccccccHH
Q psy14319          1 MKFYKYVLGDGDKVKALDRLVTKKAGFNSSHIITGQTYSRKVDVIVTGVLSSLGASIHKKAGFNSSH-IITGQTYSRKVD   79 (486)
Q Consensus         1 ~~~~~~~~~d~~r~~~~~~~~~~~~g~~~~~a~~g~~~~r~~d~~~~Gt~a~~~~~~a~~LGf~~~~-~~~~av~~RD~~   79 (486)
                      ++|++||.||.+|+.++.++++.+ ++ |++|++|++||  |||          +++|++|||+.+. |+.|++++|||+
T Consensus       171 lay~~~l~RD~~Rl~d~~~rvn~s-PL-GagAlaGt~~~--iDR----------~~tA~lLGF~~~~~Nsldavs~Rdf~  236 (459)
T COG0165         171 LAYAEMLARDIERLRDALKRVNVS-PL-GAGALAGTPFP--IDR----------ERTAELLGFDAVTRNSLDAVSDRDFI  236 (459)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhccC-Cc-cccccCCCCCC--CCH----------HHHHHHcCCchhhcCchhhhhhHHHH
Confidence            589999999999999999999953 33 38999999997  995          8999999999996 677999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHh--ccccccccccCCCCCccCCCCCCchHHHHHHHHHHHHHHHHHHHH--Hhhcc
Q psy14319         80 VIVTGVLSSLGASIHKLATDLRLLAH--MKEIEEPFESTQIGSSAMAYKRNPMRSERLCSLARFLMSLHQNSL--ATAST  155 (486)
Q Consensus        80 ~e~~~~la~la~~LsRlA~DL~l~ss--~~el~e~~~~~~~GSSiMPqKrNP~~~E~ir~~a~~v~g~~~~~l--~~~~~  155 (486)
                      +|+++++++++++|||||+||++|++  |+.|..|. +.++||||||||||||++|++|++++++.|.+.+++  +.++|
T Consensus       237 le~l~~~s~~~~~LSRlaedlI~wss~EfgfI~l~D-~~sTGSSIMPQKKNPD~~ELiRgk~grv~G~l~~ll~~~k~lP  315 (459)
T COG0165         237 LEFLSAAALIMVHLSRLAEDLILWSSPEFGFIELPD-EFSTGSSIMPQKKNPDVLELIRGKAGRVIGALTGLLTIMKGLP  315 (459)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHccccCceEeCCc-ccccccccCCCCCCCcHHHHHHHhhhhhHHHHHHHHHHHhcCc
Confidence            99999999999999999999999996  67666654 567899999999999999999999999999998755  35789


Q ss_pred             ccccCCCchhhHhhhchHHHHHHHHHHHHHHHHhhhccccCHHhhhhhhcCCCCCCcccccccccCCCCCCCcHHHHHHH
Q psy14319        156 QWMERTLDDSANRRLTLSESFLTTDCLLITLQNVLEGLVVYPKETYSIRIIPDNRLSSHHTTKRSGRPGDGDKVKALDRL  235 (486)
Q Consensus       156 ~~~erDl~~~~~~~~~l~~a~~~~~~~l~~~~~vl~~l~vn~erm~~~~~~~~~~g~~~~~~~~~~~~~~g~~~~~i~~~  235 (486)
                      ..|+||+|+.+   .++++++.++..++.++..++++|+||+++|++..    ..|++              .+++++++
T Consensus       316 laYnrDlQedk---e~lfds~~t~~~~l~~~~~mv~~l~vn~e~~~~a~----~~gfs--------------~aTdlAd~  374 (459)
T COG0165         316 LAYNRDLQEDK---EPLFDSVDTLEDSLRVLAGMVSGLTVNKERMREAA----EAGFS--------------TATDLADY  374 (459)
T ss_pred             ccccHHHHhhh---HHHHHHHHHHHHHHHHHHHHHccCeeCHHHHHHHh----hcccc--------------hHHHHHHH
Confidence            99999999875   89999999999999999999999999999999843    34444              57899998


Q ss_pred             HH-HHcCCCCCcccc
Q psy14319        236 VT-KKAGFTSSHIIT  249 (486)
Q Consensus       236 lA-~~LGf~~a~~~~  249 (486)
                      ++ +.++|+.+|.+.
T Consensus       375 lv~kGvPFReAh~iv  389 (459)
T COG0165         375 LVRKGVPFREAHEIV  389 (459)
T ss_pred             HHHcCCCHHHHHHHH
Confidence            65 588888876433

>KOG1316|consensus

Probab=100.00  E-value=4.1e-41  Score=331.66  Aligned_cols=210  Identities=19%  Similarity=0.198  Sum_probs=185.4

Q ss_pred             ChhhhhHhccHHHHHHHHHHHhh-hcCCCceeecccCcccccchhhhhhhhhhhhHHHHHHcCCCCCC-CcccccccccH
Q psy14319          1 MKFYKYVLGDGDKVKALDRLVTK-KAGFNSSHIITGQTYSRKVDVIVTGVLSSLGASIHKKAGFNSSH-IITGQTYSRKV   78 (486)
Q Consensus         1 ~~~~~~~~~d~~r~~~~~~~~~~-~~g~~~~~a~~g~~~~r~~d~~~~Gt~a~~~~~~a~~LGf~~~~-~~~~av~~RD~   78 (486)
                      +.|+..|.||..|+.++.+|++. ++|   ++|++|.+|+  |||          +.+++.|||.++. |++++|++|||
T Consensus       174 lSha~~l~~D~~Rl~q~~~R~n~~PLG---agALAGnpl~--iDR----------~~la~~LgF~~v~~NSm~AvsDRDF  238 (464)
T KOG1316|consen  174 LSHAEQLTRDLGRLVQIRKRLNQLPLG---AGALAGNPLG--IDR----------EFLAEELGFEGVIMNSMDAVSDRDF  238 (464)
T ss_pred             HHHHHHHHhHHHHHHHHHHHhccCCcc---cchhcCCCCC--ccH----------HHHHHhcCCcccchhhhhccccchh
Confidence            46899999999999999999995 455   8999999997  995          7899999999996 78899999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHh--ccc--cccccccCCCCCccCCCCCCchHHHHHHHHHHHHHHHHHHHHHh--
Q psy14319         79 DVIVTGVLSSLGASIHKLATDLRLLAH--MKE--IEEPFESTQIGSSAMAYKRNPMRSERLCSLARFLMSLHQNSLAT--  152 (486)
Q Consensus        79 ~~e~~~~la~la~~LsRlA~DL~l~ss--~~e--l~e~~~~~~~GSSiMPqKrNP~~~E~ir~~a~~v~g~~~~~l~~--  152 (486)
                      ++||++|.++++.|+||+|+|+++|++  |++  +++.|   .+|||+||||||||.+|++||++++|.|.+.+++++  
T Consensus       239 Vvef~fw~sm~m~HlSRlaEdlIiy~t~EF~Fv~lSDay---STGSSlMPQKKNpDslELlRgksgrV~gdl~g~lmt~K  315 (464)
T KOG1316|consen  239 VVEFLFWASMVMTHLSRLAEDLIIYSTKEFGFVTLSDAY---STGSSLMPQKKNPDSLELLRGKSGRVFGDLTGLLMTLK  315 (464)
T ss_pred             HHHHHHHHHHHHHHHHHHhhHhheeeccccCceeecccc---ccCcccCCCCCCCCHHHHhccccceehhhhHHHHHHhc
Confidence            999999999999999999999999995  554  55555   569999999999999999999999999999997764  


Q ss_pred             hccccccCCCchhhHhhhchHHHHHHHHHHHHHHHHhhhccccCHHhhhhhhcCCCCCCcccccccccCCCCCCCcHHHH
Q psy14319        153 ASTQWMERTLDDSANRRLTLSESFLTTDCLLITLQNVLEGLVVYPKETYSIRIIPDNRLSSHHTTKRSGRPGDGDKVKAL  232 (486)
Q Consensus       153 ~~~~~~erDl~~~~~~~~~l~~a~~~~~~~l~~~~~vl~~l~vn~erm~~~~~~~~~~g~~~~~~~~~~~~~~g~~~~~i  232 (486)
                      +.|+.||+|+|+++   +++++.+.++..++.++.+++++++||+++|++.  +++        +|         -++++
T Consensus       316 G~PstYnkDlQeDK---ep~Fds~~tv~~~l~v~tgv~stltvn~e~m~~a--Lt~--------dm---------lATdl  373 (464)
T KOG1316|consen  316 GLPSTYNKDLQEDK---EPLFDSSKTVSDSLQVATGVISTLTVNQENMEKA--LTP--------DM---------LATDL  373 (464)
T ss_pred             CCccccccchhhhh---hHHHhhHHHHHHHHHHHHHHhhheeECHHHHhhc--cCc--------hh---------hHhHH
Confidence            79999999999985   8999999999999999999999999999999983  222        22         24777


Q ss_pred             HHH-HHHHcCCCCCccccc
Q psy14319        233 DRL-VTKKAGFTSSHIITG  250 (486)
Q Consensus       233 ~~~-lA~~LGf~~a~~~~~  250 (486)
                      +++ +.++++|+..|++++
T Consensus       374 A~YLVrKGvPFRqtHhisG  392 (464)
T KOG1316|consen  374 AYYLVRKGVPFRQTHHISG  392 (464)
T ss_pred             HHHHHHcCCCchhhhhhhH
Confidence            777 678999999877654

>PLN02646 argininosuccinate lyase

Probab=100.00  E-value=2.4e-38  Score=337.58  Aligned_cols=179  Identities=17%  Similarity=0.148  Sum_probs=143.9

Q ss_pred             ChhhhhHhccHHHHHHHHHHHhhhcCCCceeecccCcccccchhhhhhhhhhhhHHHHHHcCCCCCCCc-ccccccccHH
Q psy14319          1 MKFYKYVLGDGDKVKALDRLVTKKAGFNSSHIITGQTYSRKVDVIVTGVLSSLGASIHKKAGFNSSHII-TGQTYSRKVD   79 (486)
Q Consensus         1 ~~~~~~~~~d~~r~~~~~~~~~~~~g~~~~~a~~g~~~~r~~d~~~~Gt~a~~~~~~a~~LGf~~~~~~-~~av~~RD~~   79 (486)
                      .+|+++|.||.+|+.++.++++.+ ++| +++++|++++  +|+          +++|++|||..|..| .|++++||++
T Consensus       184 ~~~~~~l~rd~~RL~~~~~r~~~~-pLG-gga~aGt~~~--idr----------~~~A~~LGf~~~~~n~~da~~~RD~~  249 (474)
T PLN02646        184 LSHVEQLERDAGRLVDCRPRVNFC-PLG-SCALAGTGLP--IDR----------FMTAKDLGFTAPMRNSIDAVSDRDFV  249 (474)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhhhc-CCc-chhhcCCCCC--CCH----------HHHHHHhCCCCCCCChHHHHhccHHH
Confidence            379999999999999999999853 442 4999999996  985          689999999988765 4899999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHh--ccccccccccCCCCCccCCCCCCchHHHHHHHHHHHHHHHHHHHHH--hhcc
Q psy14319         80 VIVTGVLSSLGASIHKLATDLRLLAH--MKEIEEPFESTQIGSSAMAYKRNPMRSERLCSLARFLMSLHQNSLA--TAST  155 (486)
Q Consensus        80 ~e~~~~la~la~~LsRlA~DL~l~ss--~~el~e~~~~~~~GSSiMPqKrNP~~~E~ir~~a~~v~g~~~~~l~--~~~~  155 (486)
                      +|+++++++++++|+|||+||++|++  |+++.+| .++++|||||||||||+++|++|++|+++.|+..+++.  .++|
T Consensus       250 ~e~~~~la~ia~~LsRia~Dl~l~ss~e~g~v~~~-d~~~~GSSiMPqKrNP~~~E~ir~~a~~v~G~~~~~~~~~~~~p  328 (474)
T PLN02646        250 LEFLFANSITAIHLSRLGEEWVLWASEEFGFVTPS-DAVSTGSSIMPQKKNPDPMELVRGKSARVIGDLVTVLALCKGLP  328 (474)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHcCCCCCeeeeC-CCCCCCcCCCCCCCCCHHHHHHHHHHHHHHhhhHHHHHHhcCCc
Confidence            99999999999999999999999996  9999988 57899999999999999999999999999999987543  4567


Q ss_pred             ccccCCCchhhHhhhchHHHHHHHHHHHHHHHHhhhccccCH
Q psy14319        156 QWMERTLDDSANRRLTLSESFLTTDCLLITLQNVLEGLVVYP  197 (486)
Q Consensus       156 ~~~erDl~~~~~~~~~l~~a~~~~~~~l~~~~~vl~~l~vn~  197 (486)
                      .+|+||+|+.   |.++++++..+..++..+..++++|+||+
T Consensus       329 ~~~~rD~q~~---~~~l~~~~~~~~~~l~~~~~~l~~l~v~~  367 (474)
T PLN02646        329 TAYNRDLQED---KEPLFDSVDTVSDMLEVATEFAQNITFNP  367 (474)
T ss_pred             hHhhcchhhH---HHHHHHHHHHHHHHHHHHHHHHccCEECH
Confidence            7888877432   44555444444444444333333333333

>COG0165 ArgH Argininosuccinate lyase [Amino acid transport and metabolism]

Probab=100.00  E-value=1.3e-37  Score=323.41  Aligned_cols=203  Identities=20%  Similarity=0.178  Sum_probs=181.6

Q ss_pred             CCCCcccccccccCCCCCCCcHHHHHHHHHHHcCCCCCc-cccccccCccHHHHHHHHHHHHHHHHHHHHHHHHHHhh--
Q psy14319        208 DNRLSSHHTTKRSGRPGDGDKVKALDRLVTKKAGFTSSH-IITGQTYSRKVDVIVTGVLSSLGASIHKLATDLRLLAH--  284 (486)
Q Consensus       208 ~~~g~~~~~~~~~~~~~~g~~~~~i~~~lA~~LGf~~a~-~~~~~~~~rd~~~e~~~~l~~~~~~l~rla~Dl~l~ss--  284 (486)
                      +|.|++         +..|+..+..++++++.|||+.+. |..+++++||+++|+++++++++.+|+|+|+||.+|+|  
T Consensus       194 sPLGag---------AlaGt~~~iDR~~tA~lLGF~~~~~Nsldavs~Rdf~le~l~~~s~~~~~LSRlaedlI~wss~E  264 (459)
T COG0165         194 SPLGAG---------ALAGTPFPIDRERTAELLGFDAVTRNSLDAVSDRDFILEFLSAAALIMVHLSRLAEDLILWSSPE  264 (459)
T ss_pred             CCcccc---------ccCCCCCCCCHHHHHHHcCCchhhcCchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccc
Confidence            467776         467888999999999999999877 78899999999999999999999999999999999999  


Q ss_pred             hhhccccccCCCCcCcCCCCCCCchHHHHHHHHHHHHHHHhHHHHHHhhhhHhhhcccccCCCCCCccccchhhhhhccC
Q psy14319        285 MKEIEEPFESTQIGSSAMAYKRNPMRSERLCSLARFLMSLHQNSLATASTQWMERTLDDSANRFPTKSVFSCVTQVKQHG  364 (486)
Q Consensus       285 ~~el~~~~~~~~~GSSiMPqKrNP~~~E~~~~~a~~~~g~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~g  364 (486)
                      ||.|..| ++.++|||||||||||+.+|++|++++++.|.+.+++.....      ++                    .+
T Consensus       265 fgfI~l~-D~~sTGSSIMPQKKNPD~~ELiRgk~grv~G~l~~ll~~~k~------lP--------------------la  317 (459)
T COG0165         265 FGFIELP-DEFSTGSSIMPQKKNPDVLELIRGKAGRVIGALTGLLTIMKG------LP--------------------LA  317 (459)
T ss_pred             CceEeCC-cccccccccCCCCCCCcHHHHHHHhhhhhHHHHHHHHHHHhc------Cc--------------------cc
Confidence            9999987 678999999999999999999999999999999988766321      11                    24


Q ss_pred             CcchhhhhhccCCCCccccccCCCCCCCccccCCchhHhhhhhhcccchHHHHHHHHHHHHHHHhchhCCeeCHHHHHHH
Q psy14319        365 KENDLVDRIRADPYFAPILNQMPTLLDPKSFYGRAPEQQRLSAKGIHTLSESFLTTDCLLITLQNVLEGLVVYPKVIQRH  444 (486)
Q Consensus       365 ~~~d~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~q~~~~~~~~~~l~~~~~~~~~~l~~~~~~l~~l~v~~~~m~~~  444 (486)
                      ||+|+                                |+.+     ..+++++.++..++..+..++++|+||+++|++.
T Consensus       318 YnrDl--------------------------------Qedk-----e~lfds~~t~~~~l~~~~~mv~~l~vn~e~~~~a  360 (459)
T COG0165         318 YNRDL--------------------------------QEDK-----EPLFDSVDTLEDSLRVLAGMVSGLTVNKERMREA  360 (459)
T ss_pred             ccHHH--------------------------------Hhhh-----HHHHHHHHHHHHHHHHHHHHHccCeeCHHHHHHH
Confidence            55565                                7776     5889999999999999999999999999999999


Q ss_pred             HhccCChhHHHHHHHHHHHcCCChHHHHHHHHHHHHHhhhc
Q psy14319        445 IDQELPFMATENIIMAMVKAGGDRQVCHEKIRVLSHQAGAQ  485 (486)
Q Consensus       445 l~~~~~~~~a~~~~~~L~~~g~~fr~Ah~~v~~~~~~a~~~  485 (486)
                      +..  ||++|+++|+.||++|+|||+||++|+++|+.+.++
T Consensus       361 ~~~--gfs~aTdlAd~lv~kGvPFReAh~ivG~~v~~~~~~  399 (459)
T COG0165         361 AEA--GFSTATDLADYLVRKGVPFREAHEIVGEAVRRAEER  399 (459)
T ss_pred             hhc--ccchHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHc
Confidence            854  689999999999999999999999999999998764

>cd03302 Adenylsuccinate_lyase_2 Adenylsuccinate lyase (ASL)_subgroup 2

Probab=100.00  E-value=5.7e-38  Score=332.37  Aligned_cols=216  Identities=68%  Similarity=0.928  Sum_probs=190.6

Q ss_pred             CCCCCCcccccccccCCCCCCCcHHHHHHHHHHHcCCCCCccccccccCccHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q psy14319        206 IPDNRLSSHHTTKRSGRPGDGDKVKALDRLVTKKAGFTSSHIITGQTYSRKVDVIVTGVLSSLGASIHKLATDLRLLAHM  285 (486)
Q Consensus       206 ~~~~~g~~~~~~~~~~~~~~g~~~~~i~~~lA~~LGf~~a~~~~~~~~~rd~~~e~~~~l~~~~~~l~rla~Dl~l~ss~  285 (486)
                      +.|+.|+...  +...+.++-..++.+.+++++.|||..+.+.++++++||+++|++++++.++++|+|||+||++|+++
T Consensus       182 ~~GavGt~a~--~~~~~~~dr~~~~~v~~~~a~~LGl~~~~~~~~~v~~rD~~~e~~~~la~~a~~L~riA~Dl~l~~s~  259 (436)
T cd03302         182 VKGTTGTQAS--FLDLFEGDHDKVEALDELVTKKAGFKKVYPVTGQTYSRKVDIDVLNALSSLGATAHKIATDIRLLANL  259 (436)
T ss_pred             CcChhhhhHH--HHhcCCchHHHHHHHHHHHHHHcCCCCCCCchhhhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHhhC
Confidence            5677887531  00111112122578889999999999875677788999999999999999999999999999999999


Q ss_pred             hhccccccCCCCcCcCCCCCCCchHHHHHHHHHHHHHHHhHHHHHHhhhhHhhhcccccCCCCCCccccchhhhhhccCC
Q psy14319        286 KEIEEPFESTQIGSSAMAYKRNPMRSERLCSLARFLMSLHQNSLATASTQWMERTLDDSANRFPTKSVFSCVTQVKQHGK  365 (486)
Q Consensus       286 ~el~~~~~~~~~GSSiMPqKrNP~~~E~~~~~a~~~~g~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~g~  365 (486)
                      +||.+|+..+++|||||||||||+.+|+++++|+.+.|++.+++......|+|||+++|.+                   
T Consensus       260 ~el~e~~~~g~~GSS~MPhKrNPv~~E~i~~~a~~~~g~~~~~~~~~~~~~~Erd~~~~~~-------------------  320 (436)
T cd03302         260 KEVEEPFEKGQIGSSAMPYKRNPMRSERCCSLARHLMNLASNAAQTASTQWFERTLDDSAN-------------------  320 (436)
T ss_pred             ceecccccCCCCCcccCCCccCcHHHHHHHHHHHHHHhhHHHHHHHhhccccccCCchhHH-------------------
Confidence            9999999889999999999999999999999999999999999978888999999876532                   


Q ss_pred             cchhhhhhccCCCCccccccCCCCCCCccccCCchhHhhhhhhcccchHHHHHHHHHHHHHHHhchhCCeeCHHHHHHHH
Q psy14319        366 ENDLVDRIRADPYFAPILNQMPTLLDPKSFYGRAPEQQRLSAKGIHTLSESFLTTDCLLITLQNVLEGLVVYPKVIQRHI  445 (486)
Q Consensus       366 ~~d~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~q~~~~~~~~~~l~~~~~~~~~~l~~~~~~l~~l~v~~~~m~~~l  445 (486)
                                                                 +|..+++++.++..++..+..++++|+||++||++++
T Consensus       321 -------------------------------------------~~~~l~~~~~~~~~~l~~~~~~l~~l~v~~~rm~~~l  357 (436)
T cd03302         321 -------------------------------------------RRIAIPEAFLAADAILITLQNISEGLVVYPKVIERHI  357 (436)
T ss_pred             -------------------------------------------HHHHHHHHHHHHHHHHHHHHHHHcCCEECHHHHHHHH
Confidence                                                       3558899999999999999999999999999999999


Q ss_pred             hccCChhHHHHHHHHHHHcCCChHHHHHHHHHHHHHhhhc
Q psy14319        446 DQELPFMATENIIMAMVKAGGDRQVCHEKIRVLSHQAGAQ  485 (486)
Q Consensus       446 ~~~~~~~~a~~~~~~L~~~g~~fr~Ah~~v~~~~~~a~~~  485 (486)
                      +.+++++++|.+++.|+++|+|||+||++|+++++++.++
T Consensus       358 ~~~~g~~~se~~~~~L~~~g~~~~~Ah~~v~~~~~~~~~~  397 (436)
T cd03302         358 RQELPFMATENIIMAAVKAGGDRQDAHERIRVLSHQAAAV  397 (436)
T ss_pred             HhccChHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHH
Confidence            9999999999999999999999999999999999998765

This subgroup contains mainly eukaryotic proteins similar to ASL, a member of the Lyase class I family. Members of this family for the most part catalyze similar beta-elimination reactions in which a C-N or C-O bond is cleaved with the release of fumarate as one of the products. These proteins are active as tetramers. The four active sites of the homotetrameric enzyme are each formed by residues from three different subunits. ASL catalyzes two steps in the de novo purine biosynthesis: the conversion of 5-aminoimidazole-(N-succinylocarboxamide) ribotide (SAICAR) into 5-aminoimidazole-4-carboxamide ribotide (AICAR) and, the conversion of adenylsuccinate (SAMP) into adenosine monophosphate (AMP). ASL deficiency has been linked to several pathologies including psychomotor retardation with autistic features, epilepsy and muscle wasting.

>PRK08470 adenylosuccinate lyase; Provisional

Probab=100.00  E-value=1.7e-36  Score=321.43  Aligned_cols=204  Identities=28%  Similarity=0.409  Sum_probs=182.5

Q ss_pred             CCCCCCcccccccccCCCCCCCcHHHHHHHHHHHcCCCCCccccccccCccHHHHHHHHHHHHHHHHHHHHHHHHHHhh-
Q psy14319        206 IPDNRLSSHHTTKRSGRPGDGDKVKALDRLVTKKAGFTSSHIITGQTYSRKVDVIVTGVLSSLGASIHKLATDLRLLAH-  284 (486)
Q Consensus       206 ~~~~~g~~~~~~~~~~~~~~g~~~~~i~~~lA~~LGf~~a~~~~~~~~~rd~~~e~~~~l~~~~~~l~rla~Dl~l~ss-  284 (486)
                      ++|++|+..+         .   ...+++++++.|||..+ +..+++++||+++|++++|+.++++|+|||+||++|++ 
T Consensus       180 lgGAvGt~a~---------~---~~~v~~~~a~~LGl~~~-~~~~~v~~RD~~~e~~~~La~~a~~L~ria~Di~~l~~~  246 (442)
T PRK08470        180 ISGAMGNFAH---------A---PLELEELVCEELGLKPA-PVSNQVIQRDRYARLASALALLASSCEKIAVAIRHLQRT  246 (442)
T ss_pred             Ccchhccccc---------C---ChHHHHHHHHHcCCCCC-CCCCCccCcHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence            5677777521         1   26778999999999965 34567899999999999999999999999999999998 


Q ss_pred             -hhhccccccCCCCcCcCCCCCCCchHHHHHHHHHHHHHHHhHHHHHHhhhhHhhhcccccCCCCCCccccchhhhhhcc
Q psy14319        285 -MKEIEEPFESTQIGSSAMAYKRNPMRSERLCSLARFLMSLHQNSLATASTQWMERTLDDSANRFPTKSVFSCVTQVKQH  363 (486)
Q Consensus       285 -~~el~~~~~~~~~GSSiMPqKrNP~~~E~~~~~a~~~~g~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~  363 (486)
                       |+|+.|+|+.+++|||||||||||+.+|+++++++.+.|....++.. ...|+|||+++|.                  
T Consensus       247 E~~ev~e~~~~g~~GSS~MPhKrNPv~~E~i~~~a~~~~~~~~~~~~~-~~~~~eRD~~~~~------------------  307 (442)
T PRK08470        247 EVYEAEEYFSKGQKGSSAMPHKRNPVLSENITGLCRVIRSFATPALEN-VALWHERDISHSS------------------  307 (442)
T ss_pred             ccceecccCCCCCCCcCCCCCCcCcHHHHHHHHHHHHHHHHHHHHHHh-chHhhccCCchhH------------------
Confidence             99999999999999999999999999999999999999998766654 6788999886542                  


Q ss_pred             CCcchhhhhhccCCCCccccccCCCCCCCccccCCchhHhhhhhhcccchHHHHHHHHHHHHHHHhchhCCeeCHHHHHH
Q psy14319        364 GKENDLVDRIRADPYFAPILNQMPTLLDPKSFYGRAPEQQRLSAKGIHTLSESFLTTDCLLITLQNVLEGLVVYPKVIQR  443 (486)
Q Consensus       364 g~~~d~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~q~~~~~~~~~~l~~~~~~~~~~l~~~~~~l~~l~v~~~~m~~  443 (486)
                                                                  .+|..+++++.++..++..+..++++|+||++||++
T Consensus       308 --------------------------------------------~e~~~l~~~~~~~~~~l~~~~~~l~~l~v~~~rm~~  343 (442)
T PRK08470        308 --------------------------------------------VERFILPDAFITTDFMLHRLNNVIENLVVYPENMMK  343 (442)
T ss_pred             --------------------------------------------HHhhhHHHHHHHHHHHHHHHHHHHccCEECHHHHHH
Confidence                                                        146789999999999999999999999999999999


Q ss_pred             HHhccCChhHHHHHHHHHHHcCCChHHHHHHHHHHHHHhhhc
Q psy14319        444 HIDQELPFMATENIIMAMVKAGGDRQVCHEKIRVLSHQAGAQ  485 (486)
Q Consensus       444 ~l~~~~~~~~a~~~~~~L~~~g~~fr~Ah~~v~~~~~~a~~~  485 (486)
                      |++.+.|+++||++++.|+++|+|||+||++|++++.++.++
T Consensus       344 nl~~~~g~~~ae~l~~~L~~~G~~~~~Ah~~V~~~~~~a~~~  385 (442)
T PRK08470        344 NLNLTGGLVFSQRVLLELPKKGVSREDAYKIVQRNAMKVWED  385 (442)
T ss_pred             HHHhccChHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHH
Confidence            999999999999999999999999999999999999998664

>COG0015 PurB Adenylosuccinate lyase [Nucleotide transport and metabolism]

Probab=100.00  E-value=2.2e-36  Score=314.95  Aligned_cols=208  Identities=35%  Similarity=0.474  Sum_probs=193.5

Q ss_pred             cCCCCCCcccccccccCCCCCCCcHHHHHHHHHHHcCCCCCccccccccCccHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q psy14319        205 IIPDNRLSSHHTTKRSGRPGDGDKVKALDRLVTKKAGFTSSHIITGQTYSRKVDVIVTGVLSSLGASIHKLATDLRLLAH  284 (486)
Q Consensus       205 ~~~~~~g~~~~~~~~~~~~~~g~~~~~i~~~lA~~LGf~~a~~~~~~~~~rd~~~e~~~~l~~~~~~l~rla~Dl~l~ss  284 (486)
                      .++|++||.         +..++.+..+++++++.|||.++ +.+.|+..||+++|+.++|+.+++++.|||.||++|++
T Consensus       183 ~i~Ga~Gt~---------Aa~~~~~~~ve~~v~e~LGL~~~-p~stq~~~RD~~ae~~~~La~i~~sl~k~a~dIr~l~~  252 (438)
T COG0015         183 KIGGAVGTL---------AALGDLGAEVEERVAEKLGLKPA-PISTQVSPRDRIAEFFSALALLAGSLEKFARDIRLLQR  252 (438)
T ss_pred             ccccchhhH---------hhcCchhHHHHHHHHHHcCCCCC-CCCcccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            588899985         45677789999999999999975 56669999999999999999999999999999999998


Q ss_pred             --hhhccccccCCCCcCcCCCCCCCchHHHHHHHHHHHHHHHhHHHHHHhhhhHhhhcccccCCCCCCccccchhhhhhc
Q psy14319        285 --MKEIEEPFESTQIGSSAMAYKRNPMRSERLCSLARFLMSLHQNSLATASTQWMERTLDDSANRFPTKSVFSCVTQVKQ  362 (486)
Q Consensus       285 --~~el~~~~~~~~~GSSiMPqKrNP~~~E~~~~~a~~~~g~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~  362 (486)
                        ++|+.|||.++|+|||+|||||||+.+|++.++++.+.+.....+... ..|||||+++|+++               
T Consensus       253 ~e~~Ev~E~f~~gq~GSSaMPHKrNPi~~E~~~glar~~r~~~~~~~e~~-~~whERdlt~ssve---------------  316 (438)
T COG0015         253 TEVGEVEEPFAKGQVGSSAMPHKRNPIDSENVTGLARVARALVSTLLENL-VLWHERDLTDSSVE---------------  316 (438)
T ss_pred             ccccccccccCCCCCCCCCCCcccCcHHHHHHHHHHHHHHHHHHHHHHHh-HHHHhccccchHHH---------------
Confidence              889999999999999999999999999999999999999999888876 99999999987643               


Q ss_pred             cCCcchhhhhhccCCCCccccccCCCCCCCccccCCchhHhhhhhhcccchHHHHHHHHHHHHHHHhchhCCeeCHHHHH
Q psy14319        363 HGKENDLVDRIRADPYFAPILNQMPTLLDPKSFYGRAPEQQRLSAKGIHTLSESFLTTDCLLITLQNVLEGLVVYPKVIQ  442 (486)
Q Consensus       363 ~g~~~d~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~q~~~~~~~~~~l~~~~~~~~~~l~~~~~~l~~l~v~~~~m~  442 (486)
                                                                     |..+|++|.+++.++..+..++++|+||+++|+
T Consensus       317 -----------------------------------------------r~~Lp~~~~~~~~aL~~~~~vl~~L~v~~~~m~  349 (438)
T COG0015         317 -----------------------------------------------RVILPDAFIAADGALNRLLNVLEGLEVNPERMR  349 (438)
T ss_pred             -----------------------------------------------HHHHHHHHHHHHHHHHHHHHHHHhCeeCHHHHH
Confidence                                                           558999999999999999999999999999999


Q ss_pred             HHHhccCChhHHHHHHHHHHHcCCChHHHHHHHHHHHHHhhhc
Q psy14319        443 RHIDQELPFMATENIIMAMVKAGGDRQVCHEKIRVLSHQAGAQ  485 (486)
Q Consensus       443 ~~l~~~~~~~~a~~~~~~L~~~g~~fr~Ah~~v~~~~~~a~~~  485 (486)
                      +|++..+|++.++.++..|+++|+|+++||++|++.++.+.++
T Consensus       350 ~nL~~~~gli~se~v~~~l~~~g~~Re~a~elvr~~a~~~~~~  392 (438)
T COG0015         350 RNLDLTLGLIASERVMLALRKKGMGREEAHELVREKAMKAWEQ  392 (438)
T ss_pred             HHHhhccchhhhHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHh
Confidence            9999999999999999999999999999999999999887654

>PRK07492 adenylosuccinate lyase; Provisional

Probab=100.00  E-value=3e-36  Score=318.71  Aligned_cols=192  Identities=28%  Similarity=0.396  Sum_probs=175.6

Q ss_pred             HHHHHHHHHHcCCCCCccccccccCccHHHHHHHHHHHHHHHHHHHHHHHHHHhh--hhhccccccCCCCcCcCCCCCCC
Q psy14319        230 KALDRLVTKKAGFTSSHIITGQTYSRKVDVIVTGVLSSLGASIHKLATDLRLLAH--MKEIEEPFESTQIGSSAMAYKRN  307 (486)
Q Consensus       230 ~~i~~~lA~~LGf~~a~~~~~~~~~rd~~~e~~~~l~~~~~~l~rla~Dl~l~ss--~~el~~~~~~~~~GSSiMPqKrN  307 (486)
                      +.+.+++++.|||..+ +..+++++||++++++++++.++++|+|||+||++|++  |+|+.|+|+++++||||||||||
T Consensus       195 ~~~~~~~a~~LGl~~~-~~~~~v~~RD~~~e~~~~la~~~~~L~ria~Di~~l~~~e~~El~e~~~~g~~GSS~MPhKrN  273 (435)
T PRK07492        195 PRVEEHVAKKLGLKPE-PVSTQVIPRDRHAMFFATLGVIASSIERLAIEIRHLQRTEVLEAEEFFSPGQKGSSAMPHKRN  273 (435)
T ss_pred             hHHHHHHHHHhCCCCC-CccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccchhccccCCCCCCCCCCCCCCC
Confidence            5788999999999974 45567899999999999999999999999999999998  99999999999999999999999


Q ss_pred             chHHHHHHHHHHHHHHHhHHHHHHhhhhHhhhcccccCCCCCCccccchhhhhhccCCcchhhhhhccCCCCccccccCC
Q psy14319        308 PMRSERLCSLARFLMSLHQNSLATASTQWMERTLDDSANRFPTKSVFSCVTQVKQHGKENDLVDRIRADPYFAPILNQMP  387 (486)
Q Consensus       308 P~~~E~~~~~a~~~~g~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~g~~~d~~~~~~~~~~~~~~~~~~~  387 (486)
                      |+.+|+++++++.+.|....++.. +..++|||+.+|.                                          
T Consensus       274 P~~~E~i~~~a~~~~~~~~~~~~~-~~~~~eRD~~~~~------------------------------------------  310 (435)
T PRK07492        274 PVLTENLTGLARLVRSYVVPAMEN-VALWHERDISHSS------------------------------------------  310 (435)
T ss_pred             cHHHHHHHHHHHHHHHHHHHHHHh-cchhhccCChHHH------------------------------------------
Confidence            999999999999999997766554 5788898876542                                          


Q ss_pred             CCCCCccccCCchhHhhhhhhcccchHHHHHHHHHHHHHHHhchhCCeeCHHHHHHHHhccCChhHHHHHHHHHHHcCCC
Q psy14319        388 TLLDPKSFYGRAPEQQRLSAKGIHTLSESFLTTDCLLITLQNVLEGLVVYPKVIQRHIDQELPFMATENIIMAMVKAGGD  467 (486)
Q Consensus       388 ~~~~p~~~~~~~~~q~~~~~~~~~~l~~~~~~~~~~l~~~~~~l~~l~v~~~~m~~~l~~~~~~~~a~~~~~~L~~~g~~  467 (486)
                                          .+|..+++++.++..++..+..++++|+||++||++|++.+.++++||.+++.|+++|+|
T Consensus       311 --------------------~e~~~lp~~~~~~~~~l~~~~~~l~~L~v~~~rm~~nl~~~~g~i~ae~~~~~L~~~g~~  370 (435)
T PRK07492        311 --------------------VERMIGPDATITLDFALNRLAGVIEKLVVYPENMLKNLNKFGGLVHSQRVLLALTQAGVS  370 (435)
T ss_pred             --------------------HhhhHHHHHHHHHHHHHHHHHHHHccCEECHHHHHHHHhhcCChhHHHHHHHHHHHcCCC
Confidence                                157789999999999999999999999999999999999989999999999999999999


Q ss_pred             hHHHHHHHHHHHHHhhhc
Q psy14319        468 RQVCHEKIRVLSHQAGAQ  485 (486)
Q Consensus       468 fr~Ah~~v~~~~~~a~~~  485 (486)
                      ||+||++|+++++++.++
T Consensus       371 r~~Ah~~V~~~~~~a~~~  388 (435)
T PRK07492        371 REDAYRLVQRNAMKVWEQ  388 (435)
T ss_pred             HHHHHHHHHHHHHHHHHh
Confidence            999999999999998664

>cd01595 Adenylsuccinate_lyase_like Adenylsuccinate lyase (ASL)_like

Probab=100.00  E-value=1.3e-35  Score=309.82  Aligned_cols=188  Identities=37%  Similarity=0.555  Sum_probs=171.8

Q ss_pred             CCcHHHHHHHHHHHcCCCCCccccccccCccHHHHHHHHHHHHHHHHHHHHHHHHHHhh--hhhccccccCCCCcCcCCC
Q psy14319        226 GDKVKALDRLVTKKAGFTSSHIITGQTYSRKVDVIVTGVLSSLGASIHKLATDLRLLAH--MKEIEEPFESTQIGSSAMA  303 (486)
Q Consensus       226 g~~~~~i~~~lA~~LGf~~a~~~~~~~~~rd~~~e~~~~l~~~~~~l~rla~Dl~l~ss--~~el~~~~~~~~~GSSiMP  303 (486)
                      |+.++.+++++++.|||..+ +..+++++||+++|++++++.++.+|+|||+||++|++  ||||.+|+.++++||||||
T Consensus       186 ~~~~~~~~~~~a~~LGl~~~-~~~~~~~~rd~~~e~~~~l~~~~~~l~ria~Dl~~~~s~e~gev~~~~~~~~~GSS~MP  264 (381)
T cd01595         186 GPKGPEVEERVAEKLGLKVP-PITTQIEPRDRIAELLSALALIAGTLEKIATDIRLLQRTEIGEVEEPFEKGQVGSSTMP  264 (381)
T ss_pred             CCcHHHHHHHHHHHcCCCCC-CCCCCcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccceeccccCCCCCCccCC
Confidence            34579999999999999653 44556679999999999999999999999999999999  9999999878899999999


Q ss_pred             CCCCchHHHHHHHHHHHHHHHhHHHHHHhhhhHhhhcccccCCCCCCccccchhhhhhccCCcchhhhhhccCCCCcccc
Q psy14319        304 YKRNPMRSERLCSLARFLMSLHQNSLATASTQWMERTLDDSANRFPTKSVFSCVTQVKQHGKENDLVDRIRADPYFAPIL  383 (486)
Q Consensus       304 qKrNP~~~E~~~~~a~~~~g~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~g~~~d~~~~~~~~~~~~~~~  383 (486)
                      |||||+.+|+++++++++.|.+.+++... ..++|||+.+|.                                      
T Consensus       265 qK~NP~~~E~i~~~a~~~~g~~~~~~~~~-~~~~erd~~~~~--------------------------------------  305 (381)
T cd01595         265 HKRNPIDSENIEGLARLVRALAAPALENL-VQWHERDLSDSS--------------------------------------  305 (381)
T ss_pred             CcCCcHHHHHHHHHHHHHHHHHHHHHHhh-hHhhccCCcHHH--------------------------------------
Confidence            99999999999999999999999998775 888888875431                                      


Q ss_pred             ccCCCCCCCccccCCchhHhhhhhhcccchHHHHHHHHHHHHHHHhchhCCeeCHHHHHHHHhccCChhHHHHHHHHHHH
Q psy14319        384 NQMPTLLDPKSFYGRAPEQQRLSAKGIHTLSESFLTTDCLLITLQNVLEGLVVYPKVIQRHIDQELPFMATENIIMAMVK  463 (486)
Q Consensus       384 ~~~~~~~~p~~~~~~~~~q~~~~~~~~~~l~~~~~~~~~~l~~~~~~l~~l~v~~~~m~~~l~~~~~~~~a~~~~~~L~~  463 (486)
                                              -+|..+++++.++.+++.++..++++|+||+++|+++++.++++++||.+++.|++
T Consensus       306 ------------------------~~~~~l~~~~~~~~~~l~~~~~~l~~l~v~~~~m~~~l~~~~g~~~ae~~~~~L~~  361 (381)
T cd01595         306 ------------------------VERNILPDAFLLLDAALSRLQGLLEGLVVNPERMRRNLDLTWGLILSEAVMMALAK  361 (381)
T ss_pred             ------------------------HHHHHHHHHHHHHHHHHHHHHHHHcCCEECHHHHHHHHHhccCHHHHHHHHHHHHH
Confidence                                    14679999999999999999999999999999999999999999999999999999


Q ss_pred             cCCChHHHHHHHHH
Q psy14319        464 AGGDRQVCHEKIRV  477 (486)
Q Consensus       464 ~g~~fr~Ah~~v~~  477 (486)
                      +|+|||+||++|++
T Consensus       362 ~g~g~~~Ah~~v~~  375 (381)
T cd01595         362 KGLGRQEAYELVKE  375 (381)
T ss_pred             hCCCHhHHHHHHHH
Confidence            99999999999987

This group contains ASL, prokaryotic-type 3-carboxy-cis,cis-muconate cycloisomerase (pCMLE), and related proteins. These proteins are members of the Lyase class I family. Members of this family for the most part catalyze similar beta-elimination reactions in which a C-N or C-O bond is cleaved with the release of fumarate as one of the products. These proteins are active as tetramers. The four active sites of the homotetrameric enzyme are each formed by residues from three different subunits. ASL catalyzes two steps in the de novo purine biosynthesis: the conversion of 5-aminoimidazole-(N-succinylocarboxamide) ribotide (SAICAR) into 5-aminoimidazole-4-carboxamide ribotide (AICAR) and; the conversion of adenylsuccinate (SAMP) into adenosine monophosphate (AMP). pCMLE catalyzes the cyclization of 3-carboxy-cis,cis-muconate (3CM) to 4-carboxy-muconolactone, in the beta-ketoadipate pathway. ASL deficiency has been linked t

>PRK07380 adenylosuccinate lyase; Provisional

Probab=100.00  E-value=7.7e-36  Score=315.23  Aligned_cols=191  Identities=29%  Similarity=0.437  Sum_probs=175.1

Q ss_pred             HHHHHHHHHHcCCCCCccccccccCccHHHHHHHHHHHHHHHHHHHHHHHHHHhh--hhhccccccCCCCcCcCCCCCCC
Q psy14319        230 KALDRLVTKKAGFTSSHIITGQTYSRKVDVIVTGVLSSLGASIHKLATDLRLLAH--MKEIEEPFESTQIGSSAMAYKRN  307 (486)
Q Consensus       230 ~~i~~~lA~~LGf~~a~~~~~~~~~rd~~~e~~~~l~~~~~~l~rla~Dl~l~ss--~~el~~~~~~~~~GSSiMPqKrN  307 (486)
                      +.+.+.+++.|||..+. ..+++.+||+++|++++++.++++|+|||+||++|++  ++|+.|+|+.+++||||||||||
T Consensus       192 ~~~~~~~a~~LGl~~~~-~~~~v~~rd~~~e~~~~la~~a~~L~kia~Di~~l~~~~~~el~e~~~~g~~GSS~MPhKrN  270 (431)
T PRK07380        192 PRVEAITCQKLGLKPDT-ASTQVISRDRHAEYVQTLALVGASLERFATEIRNLQRTDVLEVEEYFAKGQKGSSAMPHKRN  270 (431)
T ss_pred             hhHHHHHHHHcCCCCCC-CCCCccCcHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCceeecccCCCCCCCCcCCCCCCC
Confidence            56777899999999763 4567899999999999999999999999999999998  89999999999999999999999


Q ss_pred             chHHHHHHHHHHHHHHHhHHHHHHhhhhHhhhcccccCCCCCCccccchhhhhhccCCcchhhhhhccCCCCccccccCC
Q psy14319        308 PMRSERLCSLARFLMSLHQNSLATASTQWMERTLDDSANRFPTKSVFSCVTQVKQHGKENDLVDRIRADPYFAPILNQMP  387 (486)
Q Consensus       308 P~~~E~~~~~a~~~~g~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~g~~~d~~~~~~~~~~~~~~~~~~~  387 (486)
                      |+.+|+++++|+.+.|....++.. ...|+|||+.+|.                                          
T Consensus       271 P~~~E~i~~~a~~~~g~~~~~~~~-~~~~~eRD~~~~~------------------------------------------  307 (431)
T PRK07380        271 PIRSERLSGLARVLRSYAVAALEN-VALWHERDISHSS------------------------------------------  307 (431)
T ss_pred             CHHHHHHHHHHHHHHHHHHHHHHh-chhhhccCchHHH------------------------------------------
Confidence            999999999999999999876544 5688898876542                                          


Q ss_pred             CCCCCccccCCchhHhhhhhhcccchHHHHHHHHHHHHHHHhchhCCeeCHHHHHHHHhccCChhHHHHHHHHHHHcCCC
Q psy14319        388 TLLDPKSFYGRAPEQQRLSAKGIHTLSESFLTTDCLLITLQNVLEGLVVYPKVIQRHIDQELPFMATENIIMAMVKAGGD  467 (486)
Q Consensus       388 ~~~~p~~~~~~~~~q~~~~~~~~~~l~~~~~~~~~~l~~~~~~l~~l~v~~~~m~~~l~~~~~~~~a~~~~~~L~~~g~~  467 (486)
                                          .+|..+++++.++..++..+..++++|+||++||++|++...++++||++++.||++|+|
T Consensus       308 --------------------~e~~~l~~~~~~~~~~l~~~~~~l~~L~v~~~rm~~nl~~~~g~~~ae~~~~~Lv~~gl~  367 (431)
T PRK07380        308 --------------------VERVMLPDCSILLHFMLREMTDLVKNLLVYPENMRRNMNIYGGVVFSQRVLLALVEKGMS  367 (431)
T ss_pred             --------------------HHHHHHHHHHHHHHHHHHHHHHHHccCEECHHHHHHHHHhcCChHHHHHHHHHHHHcCCC
Confidence                                147799999999999999999999999999999999999889999999999999999999


Q ss_pred             hHHHHHHHHHHHHHhhh
Q psy14319        468 RQVCHEKIRVLSHQAGA  484 (486)
Q Consensus       468 fr~Ah~~v~~~~~~a~~  484 (486)
                      ||+||++|+++++++.+
T Consensus       368 r~~Ah~~V~~~~~~a~~  384 (431)
T PRK07380        368 REEAYRLVQKNAHTAWN  384 (431)
T ss_pred             HHHHHHHHHHHHHHHHH
Confidence            99999999999999976

>PRK04833 argininosuccinate lyase; Provisional

Probab=100.00  E-value=6.5e-36  Score=318.11  Aligned_cols=180  Identities=17%  Similarity=0.168  Sum_probs=151.6

Q ss_pred             hhhhhHhccHHHHHHHHHHHhhh-cCCCceeecccCcccccchhhhhhhhhhhhHHHHHHcCCCCCCCcc-cccccccHH
Q psy14319          2 KFYKYVLGDGDKVKALDRLVTKK-AGFNSSHIITGQTYSRKVDVIVTGVLSSLGASIHKKAGFNSSHIIT-GQTYSRKVD   79 (486)
Q Consensus         2 ~~~~~~~~d~~r~~~~~~~~~~~-~g~~~~~a~~g~~~~r~~d~~~~Gt~a~~~~~~a~~LGf~~~~~~~-~av~~RD~~   79 (486)
                      +|++.|.||.+|+.++.++++.+ +|   ++|+.|+.++  +|+          .++|++|||..|..+| +++++||++
T Consensus       171 ~~~~~l~r~~~rL~~~~~~~~~~plG---gaA~~GT~~~--~dr----------~~~a~~LGf~~~~~n~~~a~~~rd~~  235 (455)
T PRK04833        171 AYVEMLARDESRLQDALKRLDVSPLG---SGALAGTAYE--IDR----------EQLAGWLGFASATRNSLDSVSDRDHV  235 (455)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhhcCCC---ccccccCCCC--CCH----------HHHHHHhCCCCCCCCHHHHHhccHHH
Confidence            68999999999999999999853 55   6888999996  884          6999999999997665 889999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHh--cc--ccccccccCCCCCccCCCCCCchHHHHHHHHHHHHHHHHHHHHH--hh
Q psy14319         80 VIVTGVLSSLGASIHKLATDLRLLAH--MK--EIEEPFESTQIGSSAMAYKRNPMRSERLCSLARFLMSLHQNSLA--TA  153 (486)
Q Consensus        80 ~e~~~~la~la~~LsRlA~DL~l~ss--~~--el~e~~~~~~~GSSiMPqKrNP~~~E~ir~~a~~v~g~~~~~l~--~~  153 (486)
                      +++++++++++++|+|||+|+++|++  ||  |+.+++   ++|||||||||||+.+|++|++++++.|...+++.  .+
T Consensus       236 ~e~~~~l~~~a~~L~ria~Dl~l~ss~e~g~~el~~~~---~~gSSiMPqKrNP~~~E~ir~~a~~~~g~~~~~~~~~~~  312 (455)
T PRK04833        236 LELLSDASISMVHLSRFAEDLIFFNSGEAGFVELSDRV---TSGSSLMPQKKNPDALELIRGKCGRVQGALTGMLMTLKG  312 (455)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhCCCCCceeeCCCC---CCCcccCCCCCCChHHHHHHHHHHHHHhhHHHHHHHHhC
Confidence            99999999999999999999999996  66  887655   58999999999999999999999999999987553  56


Q ss_pred             ccccccCCCchhhHhhhchHHHHHHHHHHHHHHHHhhhccccCHHhhhh
Q psy14319        154 STQWMERTLDDSANRRLTLSESFLTTDCLLITLQNVLEGLVVYPKETYS  202 (486)
Q Consensus       154 ~~~~~erDl~~~~~~~~~l~~a~~~~~~~l~~~~~vl~~l~vn~erm~~  202 (486)
                      +|.+|+||+++|+   ..+++++..+..++.++..++++++||+++|++
T Consensus       313 ~~~~~~rd~~~~~---~~l~~~~~~~~~~l~~~~~~l~~l~v~~~rm~~  358 (455)
T PRK04833        313 LPLAYNKDMQEDK---EGLFDALDTWLDCLHMAALVLDGIQVKRPRCQE  358 (455)
T ss_pred             ChHHHhhhhhhhH---HHHHHHHHHHHHHHHHHHHHHhhCeECHHHHHH
Confidence            8889999998885   456666666666666666666666666666654

>PRK08540 adenylosuccinate lyase; Reviewed

Probab=100.00  E-value=5.6e-35  Score=311.01  Aligned_cols=207  Identities=29%  Similarity=0.431  Sum_probs=180.1

Q ss_pred             CCCCCCcccccccccCCCCCCCcHHHHHHHHHHHcCCCCCccccccccCccHHHHHHHHHHHHHHHHHHHHHHHHHHhh-
Q psy14319        206 IPDNRLSSHHTTKRSGRPGDGDKVKALDRLVTKKAGFTSSHIITGQTYSRKVDVIVTGVLSSLGASIHKLATDLRLLAH-  284 (486)
Q Consensus       206 ~~~~~g~~~~~~~~~~~~~~g~~~~~i~~~lA~~LGf~~a~~~~~~~~~rd~~~e~~~~l~~~~~~l~rla~Dl~l~ss-  284 (486)
                      ++|+.|+..         ..+..+..+.+.+++.|||..+. ..+++++||+++|++++++.++++|+|||+||++|++ 
T Consensus       189 lGgavGt~~---------a~~~~~~~i~~~~a~~LGl~~~~-~~~~~~~rd~~~e~~~~l~~~a~~l~kia~Dl~l~s~~  258 (449)
T PRK08540        189 MTGAVGTQA---------AFGEKGIEIQKRVMEILGLKPVL-ISNQVIQRDRHAEFMMFLANIATTLDKIGLEIRNLQRT  258 (449)
T ss_pred             ccccccchh---------hCCCccHHHHHHHHHHcCCCCCC-CcCCccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence            566777742         12334466778999999999863 3457899999999999999999999999999999998 


Q ss_pred             -hhhccccccCCCCcCcCCCCCCCchHHHHHHHHHHHHHHHhHHHHHHhhhhHhhhcccccCCCCCCccccchhhhhhcc
Q psy14319        285 -MKEIEEPFESTQIGSSAMAYKRNPMRSERLCSLARFLMSLHQNSLATASTQWMERTLDDSANRFPTKSVFSCVTQVKQH  363 (486)
Q Consensus       285 -~~el~~~~~~~~~GSSiMPqKrNP~~~E~~~~~a~~~~g~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~  363 (486)
                       ||||.++++++++|||||||||||+.+|+++++++++.|....++. ....+++||+.+|.                  
T Consensus       259 e~gei~e~~~~~~~GSSiMP~K~NP~~~E~i~~~a~~~~g~~~~~~~-~~~~~~~rd~~~~~------------------  319 (449)
T PRK08540        259 EIGEVEEEFGKKQVGSSTMPHKRNPITSEQICGLARVVRSNVEPALL-NNPLWDERDLTNSS------------------  319 (449)
T ss_pred             hhhhhhcccCCCCCCcCCCCCCcCcHHHHHHHHHHHHHHHHHHHHHh-cchhhhccCCchhH------------------
Confidence             9999999999999999999999999999999999999999876554 35566777665431                  


Q ss_pred             CCcchhhhhhccCCCCccccccCCCCCCCccccCCchhHhhhhhhcccchHHHHHHHHHHHHHHHhchhCCeeCHHHHHH
Q psy14319        364 GKENDLVDRIRADPYFAPILNQMPTLLDPKSFYGRAPEQQRLSAKGIHTLSESFLTTDCLLITLQNVLEGLVVYPKVIQR  443 (486)
Q Consensus       364 g~~~d~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~q~~~~~~~~~~l~~~~~~~~~~l~~~~~~l~~l~v~~~~m~~  443 (486)
                                                                  -+|..+++++.++.+++.++..++++|+||++||++
T Consensus       320 --------------------------------------------~e~~~l~~~~~~~~~~l~~~~~~l~~l~v~~~rm~~  355 (449)
T PRK08540        320 --------------------------------------------CERIIFPESCVLTDHILKLMIKVLEGLRFNPENIRR  355 (449)
T ss_pred             --------------------------------------------HHHHHHHHHHHHHHHHHHHHHHHHccCEECHHHHHH
Confidence                                                        146789999999999999999999999999999999


Q ss_pred             HHhccCChhHHHHHHHHHHHcCCChHHHHHHHHHHHHHhhhc
Q psy14319        444 HIDQELPFMATENIIMAMVKAGGDRQVCHEKIRVLSHQAGAQ  485 (486)
Q Consensus       444 ~l~~~~~~~~a~~~~~~L~~~g~~fr~Ah~~v~~~~~~a~~~  485 (486)
                      +++.+.+++++|++++.|++.|+|||+||++|+++++.+.++
T Consensus       356 ~l~~~~~~~~ae~la~~L~~~glg~~~Ah~~v~~l~~~a~~~  397 (449)
T PRK08540        356 NLELTKGLIMAEAVMIELAKRGMGRQEAHELVRQAAMKAHEE  397 (449)
T ss_pred             HHHHhcCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHh
Confidence            999889999999999999999999999999999999988654

>cd01360 Adenylsuccinate_lyase_1 Adenylsuccinate lyase (ASL)_subgroup 1

Probab=100.00  E-value=1.4e-35  Score=310.11  Aligned_cols=184  Identities=30%  Similarity=0.489  Sum_probs=165.9

Q ss_pred             HHHHHHHHHHcCCCCCccccccccCccHHHHHHHHHHHHHHHHHHHHHHHHHHhh--hhhccccccCCCCcCcCCCCCCC
Q psy14319        230 KALDRLVTKKAGFTSSHIITGQTYSRKVDVIVTGVLSSLGASIHKLATDLRLLAH--MKEIEEPFESTQIGSSAMAYKRN  307 (486)
Q Consensus       230 ~~i~~~lA~~LGf~~a~~~~~~~~~rd~~~e~~~~l~~~~~~l~rla~Dl~l~ss--~~el~~~~~~~~~GSSiMPqKrN  307 (486)
                      ..+++++++.|||..+ +..+++++||+++|++++++.++++|+|||+||++|++  ||||.+|+..+++||||||||||
T Consensus       189 ~~~~~~~a~~LG~~~~-~~~~~~~~rD~~~e~~~~la~~~~~L~ria~Dl~~~s~~e~gel~e~~~~~~~GSS~MPqKrN  267 (387)
T cd01360         189 PEVEERVAEKLGLKPE-PISTQVIQRDRHAEYLSTLALIASTLEKIATEIRHLQRTEVLEVEEPFSKGQKGSSAMPHKRN  267 (387)
T ss_pred             HHHHHHHHHHcCCCCC-CCCCcccCcHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccceecCCCCCCCCcCCCCCCCC
Confidence            4689999999999975 45567899999999999999999999999999999998  99999998778999999999999


Q ss_pred             chHHHHHHHHHHHHHHHhHHHHHHhhhhHhhhcccccCCCCCCccccchhhhhhccCCcchhhhhhccCCCCccccccCC
Q psy14319        308 PMRSERLCSLARFLMSLHQNSLATASTQWMERTLDDSANRFPTKSVFSCVTQVKQHGKENDLVDRIRADPYFAPILNQMP  387 (486)
Q Consensus       308 P~~~E~~~~~a~~~~g~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~g~~~d~~~~~~~~~~~~~~~~~~~  387 (486)
                      |+.+|+++++++.+.|....++. ....+++||+.+|.                                          
T Consensus       268 P~~~E~i~~~a~~~~g~~~~~~~-~~~~~~~rd~~~~~------------------------------------------  304 (387)
T cd01360         268 PILSENICGLARVIRSNVIPALE-NVALWHERDISHSS------------------------------------------  304 (387)
T ss_pred             CHHHHHHHHHHHHHHHHHHHHHh-hhHHhcCCCcchhH------------------------------------------
Confidence            99999999999999999875543 35566777664321                                          


Q ss_pred             CCCCCccccCCchhHhhhhhhcccchHHHHHHHHHHHHHHHhchhCCeeCHHHHHHHHhccCChhHHHHHHHHHHHcCCC
Q psy14319        388 TLLDPKSFYGRAPEQQRLSAKGIHTLSESFLTTDCLLITLQNVLEGLVVYPKVIQRHIDQELPFMATENIIMAMVKAGGD  467 (486)
Q Consensus       388 ~~~~p~~~~~~~~~q~~~~~~~~~~l~~~~~~~~~~l~~~~~~l~~l~v~~~~m~~~l~~~~~~~~a~~~~~~L~~~g~~  467 (486)
                                          .+|..+++++.++..++..+..++++++||++||+++++.+.++++||++++.||++|+|
T Consensus       305 --------------------~~~~~l~~~~~~~~~~l~~~~~~l~~l~v~~~rm~~~l~~~~~~~~ae~la~~L~~~g~~  364 (387)
T cd01360         305 --------------------VERVILPDATILLDYILRRMTRVLENLVVYPENMRRNLNLTKGLIFSQRVLLALVEKGMS  364 (387)
T ss_pred             --------------------HHHHHHHHHHHHHHHHHHHHHHHHccCEECHHHHHHHHHhccCHHHHHHHHHHHHHcCCC
Confidence                                146799999999999999999999999999999999999888999999999999999999


Q ss_pred             hHHHHHHHHH
Q psy14319        468 RQVCHEKIRV  477 (486)
Q Consensus       468 fr~Ah~~v~~  477 (486)
                      ||+||++|++
T Consensus       365 ~r~Ah~~V~~  374 (387)
T cd01360         365 REEAYEIVQR  374 (387)
T ss_pred             HHHHHHHHHH
Confidence            9999999998

This subgroup contains bacterial and archeal proteins similar to ASL, a member of the Lyase class I family. Members of this family for the most part catalyze similar beta-elimination reactions in which a C-N or C-O bond is cleaved with the release of fumarate as one of the products. These proteins are active as tetramers. The four active sites of the homotetrameric enzyme are each formed by residues from three different subunits. ASL catalyzes two steps in the de novo purine biosynthesis: the conversion of 5-aminoimidazole-(N-succinylocarboxamide) ribotide (SAICAR) into 5-aminoimidazole-4-carboxamide ribotide (AICAR) and, the conversion of adenylsuccinate (SAMP) into adenosine monophosphate (AMP).

>TIGR00928 purB adenylosuccinate lyase

Probab=100.00  E-value=8.9e-35  Score=308.42  Aligned_cols=206  Identities=33%  Similarity=0.470  Sum_probs=181.3

Q ss_pred             CCCCCCcccccccccCCCCCCCcHHHHHHHHHHHcCCCCCccccccccCccHHHHHHHHHHHHHHHHHHHHHHHHHHhh-
Q psy14319        206 IPDNRLSSHHTTKRSGRPGDGDKVKALDRLVTKKAGFTSSHIITGQTYSRKVDVIVTGVLSSLGASIHKLATDLRLLAH-  284 (486)
Q Consensus       206 ~~~~~g~~~~~~~~~~~~~~g~~~~~i~~~lA~~LGf~~a~~~~~~~~~rd~~~e~~~~l~~~~~~l~rla~Dl~l~ss-  284 (486)
                      ++|+.||..         ..+..+..+++++++.|||+.+.+ .+++++||+++|++++++.++++|+|||+||++|++ 
T Consensus       183 lgGa~Gt~~---------~~~~~~~~~~~~~a~~LGl~~~~~-~~~~~~rD~~~e~~~~l~~la~~L~ria~Dl~l~s~~  252 (435)
T TIGR00928       183 ISGAVGTHA---------AAYPLVEEVEERVTEFLGLKPVPI-STQIEPRDRHAELLDALALLATTLEKFAVDIRLLQRT  252 (435)
T ss_pred             ccchhhhHh---------hccccHHHHHHHHHHhcCCCCCCC-CccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence            455677753         123334788899999999998753 347899999999999999999999999999999999 


Q ss_pred             -hhhccccccCCCCcCcCCCCCCCchHHHHHHHHHHHHHHHhHHHHHHhhhhHhhhcccccCCCCCCccccchhhhhhcc
Q psy14319        285 -MKEIEEPFESTQIGSSAMAYKRNPMRSERLCSLARFLMSLHQNSLATASTQWMERTLDDSANRFPTKSVFSCVTQVKQH  363 (486)
Q Consensus       285 -~~el~~~~~~~~~GSSiMPqKrNP~~~E~~~~~a~~~~g~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~  363 (486)
                       |+|+.+|+..+++|||||||||||+.+|+++++++.+.|+.+.++.. ...++|||+.+|.                  
T Consensus       253 ~~~el~~~~~~~~~GSS~MP~K~NP~~~E~i~~~a~~~~g~~~~~~~~-~~~~~erd~~~~~------------------  313 (435)
T TIGR00928       253 EHFEVEEPFGKGQVGSSAMPHKRNPIDFENVCGLARVIRSVLSPALEN-VPLWHERDLTDSS------------------  313 (435)
T ss_pred             cccceecccCCCCCCcCCCCcCcCcHHHHHHHHHHHHHHHHHHHHHHH-hhHHhccCChHHH------------------
Confidence             99999999888999999999999999999999999999999887654 4778888764321                  


Q ss_pred             CCcchhhhhhccCCCCccccccCCCCCCCccccCCchhHhhhhhhcccchHHHHHHHHHHHHHHHhchhCCeeCHHHHHH
Q psy14319        364 GKENDLVDRIRADPYFAPILNQMPTLLDPKSFYGRAPEQQRLSAKGIHTLSESFLTTDCLLITLQNVLEGLVVYPKVIQR  443 (486)
Q Consensus       364 g~~~d~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~q~~~~~~~~~~l~~~~~~~~~~l~~~~~~l~~l~v~~~~m~~  443 (486)
                                                                  .+|..+++++.++..++.++..++++|+||++||++
T Consensus       314 --------------------------------------------~~~~~l~~~~~~~~~~l~~~~~~l~~l~v~~~rm~~  349 (435)
T TIGR00928       314 --------------------------------------------VERIILPDSFILADIMLKTTLKVVKKLVVNPENILR  349 (435)
T ss_pred             --------------------------------------------HHHHHHHHHHHHHHHHHHHHHHHHcCCEECHHHHHH
Confidence                                                        146689999999999999999999999999999999


Q ss_pred             HHhccCChhHHHHHHHHHHHcCCChHHHHHHHHHHHHHhhh
Q psy14319        444 HIDQELPFMATENIIMAMVKAGGDRQVCHEKIRVLSHQAGA  484 (486)
Q Consensus       444 ~l~~~~~~~~a~~~~~~L~~~g~~fr~Ah~~v~~~~~~a~~  484 (486)
                      +++.++++++++++++.|++.|+|||+||++|+++++++.+
T Consensus       350 ~l~~~~~~~~a~~la~~L~~~g~g~~~Ah~~v~~~~~~a~~  390 (435)
T TIGR00928       350 NLELTLGLIASERVLIALVERGMGREEAYEIVRELAMGAAE  390 (435)
T ss_pred             HHHhccChHhHHHHHHHHHHhCCChhhHHHHHHHHHHHHHH
Confidence            99999999999999999999899999999999999998865

This family consists of adenylosuccinate lyase, the enzyme that catalyzes step 8 in the purine biosynthesis pathway for de novo synthesis of IMP and also the final reaction in the two-step sequence from IMP to AMP.

>PRK12308 bifunctional argininosuccinate lyase/N-acetylglutamate synthase; Provisional

Probab=100.00  E-value=8.5e-35  Score=320.56  Aligned_cols=181  Identities=16%  Similarity=0.177  Sum_probs=156.3

Q ss_pred             hhhhhHhccHHHHHHHHHHHhhhcCCCceeecccCcccccchhhhhhhhhhhhHHHHHHcCCCCCCCcc-cccccccHHH
Q psy14319          2 KFYKYVLGDGDKVKALDRLVTKKAGFNSSHIITGQTYSRKVDVIVTGVLSSLGASIHKKAGFNSSHIIT-GQTYSRKVDV   80 (486)
Q Consensus         2 ~~~~~~~~d~~r~~~~~~~~~~~~g~~~~~a~~g~~~~r~~d~~~~Gt~a~~~~~~a~~LGf~~~~~~~-~av~~RD~~~   80 (486)
                      +|++.|.||.+|+.++.++++.. ++|| ++++|+.++  +|+          .++|++|||..|..|| |++++||+++
T Consensus       171 ~~~~~l~r~~~rL~~~~~~~~~~-plGg-ga~agt~~~--~~r----------~~~a~~LG~~~~~~n~~da~~~rd~~~  236 (614)
T PRK12308        171 AYVEMFERDYSRLEDALTRLDTC-PLGS-GALAGTAYP--IDR----------EALAHNLGFRRATRNSLDSVSDRDHVM  236 (614)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhhC-Cchh-ccccCCCCC--CCH----------HHHHHHhCCCCCcCCHHHHHcCcHHHH
Confidence            68999999999999999999853 4434 999999986  774          6899999999987665 8999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHh--cc--ccccccccCCCCCccCCCCCCchHHHHHHHHHHHHHHHHHHHHH--hhc
Q psy14319         81 IVTGVLSSLGASIHKLATDLRLLAH--MK--EIEEPFESTQIGSSAMAYKRNPMRSERLCSLARFLMSLHQNSLA--TAS  154 (486)
Q Consensus        81 e~~~~la~la~~LsRlA~DL~l~ss--~~--el~e~~~~~~~GSSiMPqKrNP~~~E~ir~~a~~v~g~~~~~l~--~~~  154 (486)
                      |++++++.++++|+|||+||++|++  |+  |+.+++   ++|||||||||||+.+|++|++++++.|.+.+++.  .++
T Consensus       237 e~~~~l~~~~~~l~ria~Dl~~~ss~e~g~~el~~~~---~~gSSiMPqK~NP~~~E~i~~~a~~~~g~~~~~~~~~~~~  313 (614)
T PRK12308        237 ELMSVASISMLHLSRLAEDLIFYNSGESGFIELADTV---TSGSSLMPQKKNPDALELIRGKTGRVYGALAGMMMTVKAL  313 (614)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhCCCcCCEEeCccC---CCccccCcCccCCcHHHHHHHHHHHHhhHHHHHHHHHcCC
Confidence            9999999999999999999999996  66  888766   47999999999999999999999999999987552  578


Q ss_pred             cccccCCCchhhHhhhchHHHHHHHHHHHHHHHHhhhccccCHHhhhh
Q psy14319        155 TQWMERTLDDSANRRLTLSESFLTTDCLLITLQNVLEGLVVYPKETYS  202 (486)
Q Consensus       155 ~~~~erDl~~~~~~~~~l~~a~~~~~~~l~~~~~vl~~l~vn~erm~~  202 (486)
                      |.+||||+++|   |..+++++..+..++..+..++++|+||++||++
T Consensus       314 ~~~~~rd~~~~---~~~l~~~~~~~~~~l~~~~~~l~~l~v~~~rm~~  358 (614)
T PRK12308        314 PLAYNKDMQED---KEGLFDALDTWNDCMEMAALCFDGIKVNGERTLE  358 (614)
T ss_pred             chhhccchhhh---HHHHHHHHHHHHHHHHHHHHHhCcCEECHHHHHH
Confidence            89999999988   5777888887777777777777777777777765

>PRK06390 adenylosuccinate lyase; Provisional

Probab=100.00  E-value=2e-34  Score=306.69  Aligned_cols=206  Identities=28%  Similarity=0.387  Sum_probs=179.7

Q ss_pred             CCCCCCcccccccccCCCCCCCcHHHHHHHHHHHcCCCCCccccccccCccHHHHHHHHHHHHHHHHHHHHHHHHHHhh-
Q psy14319        206 IPDNRLSSHHTTKRSGRPGDGDKVKALDRLVTKKAGFTSSHIITGQTYSRKVDVIVTGVLSSLGASIHKLATDLRLLAH-  284 (486)
Q Consensus       206 ~~~~~g~~~~~~~~~~~~~~g~~~~~i~~~lA~~LGf~~a~~~~~~~~~rd~~~e~~~~l~~~~~~l~rla~Dl~l~ss-  284 (486)
                      +.|+.|+..         +.|+.++.+++++++.|||..+ +..+++++||+++|++++++.++++|+|||+||++|++ 
T Consensus       188 ~~gavGt~a---------~~g~~~~~~~~~~a~~LGl~~~-~~~~~~~~rD~~~e~~~~l~~la~~l~kia~Di~l~ss~  257 (451)
T PRK06390        188 VLGPVGTGA---------ALGKDALDIQNRVMEILGIYSE-IGSTQIVNRDRYIEYLSVINGISVTLEKIATEIRNLQRP  257 (451)
T ss_pred             cCChhcChh---------hCCCcHHHHHHHHHHHcCCCCC-CCccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence            467899963         3466688999999999999986 55678899999999999999999999999999999999 


Q ss_pred             -hhhcccccc-CCCCcCcCCCCCCCchHHHHHHHHHHHHHHHhHHHHHHhhhhHhhhcccccCCCCCCccccchhhhhhc
Q psy14319        285 -MKEIEEPFE-STQIGSSAMAYKRNPMRSERLCSLARFLMSLHQNSLATASTQWMERTLDDSANRFPTKSVFSCVTQVKQ  362 (486)
Q Consensus       285 -~~el~~~~~-~~~~GSSiMPqKrNP~~~E~~~~~a~~~~g~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~  362 (486)
                       +|++.|+++ ++++|||||||||||+.+|++++++..+.+... ........+++||+.+|..                
T Consensus       258 e~g~v~E~~~~~~~~GSSiMP~KrNPv~~E~i~~~a~~~~~l~~-~~~~~~~~~~erd~~~~~~----------------  320 (451)
T PRK06390        258 EIDEVSEYFDEESQVGSSSMPSKVNPINSENVVSLSRFIRSLII-PEYEAGVTWHERDLTNSAL----------------  320 (451)
T ss_pred             ccchhhcccccCCCCCccCCCCCCCcHHHHHHHHHHHHHHHhHH-HHHHhhhHhhccCCcchHH----------------
Confidence             999998885 489999999999999999999999977777766 4445566778888765421                


Q ss_pred             cCCcchhhhhhccCCCCccccccCCCCCCCccccCCchhHhhhhhhcccchHHHHHHHHHHHHHHHhchhCCeeCHHHHH
Q psy14319        363 HGKENDLVDRIRADPYFAPILNQMPTLLDPKSFYGRAPEQQRLSAKGIHTLSESFLTTDCLLITLQNVLEGLVVYPKVIQ  442 (486)
Q Consensus       363 ~g~~~d~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~q~~~~~~~~~~l~~~~~~~~~~l~~~~~~l~~l~v~~~~m~  442 (486)
                                                                    +|..++..+.++..++..+..++++|+||++||+
T Consensus       321 ----------------------------------------------e~~~~~~~~~~~~~~l~~~~~~l~~l~v~~~rm~  354 (451)
T PRK06390        321 ----------------------------------------------ERFTIPYASILIDYVLYNMNDVLSHLIIKEDEIR  354 (451)
T ss_pred             ----------------------------------------------HHhhHHHHHHHHHHHHHHHHHHHcCCEECHHHHH
Confidence                                                          3557788888899999999999999999999999


Q ss_pred             HHHhccCChhHHHHHHHHHHHcCCChHHHHHHHHHHHHHhhhc
Q psy14319        443 RHIDQELPFMATENIIMAMVKAGGDRQVCHEKIRVLSHQAGAQ  485 (486)
Q Consensus       443 ~~l~~~~~~~~a~~~~~~L~~~g~~fr~Ah~~v~~~~~~a~~~  485 (486)
                      ++++. .++++||.+++.|++.|++||+||++|+++++++.++
T Consensus       355 ~~l~~-~~~~~se~la~~L~~~G~~~~~Ah~~v~~~~~~a~~~  396 (451)
T PRK06390        355 RNLES-DDSIMSESIVRALTLSGMPRQDAHEFVRRASMEARSN  396 (451)
T ss_pred             HHHhc-cchhhHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHh
Confidence            99998 6777899999999999999999999999999998654

>cd01360 Adenylsuccinate_lyase_1 Adenylsuccinate lyase (ASL)_subgroup 1

Probab=100.00  E-value=5.6e-35  Score=305.48  Aligned_cols=217  Identities=25%  Similarity=0.310  Sum_probs=185.2

Q ss_pred             hhhhhHhccHHHHHHHHHHHhhhcCCCceeecccCcccccchhhhhhhhhhhhHHHHHHcCCCCCCCcccccccccHHHH
Q psy14319          2 KFYKYVLGDGDKVKALDRLVTKKAGFNSSHIITGQTYSRKVDVIVTGVLSSLGASIHKKAGFNSSHIITGQTYSRKVDVI   81 (486)
Q Consensus         2 ~~~~~~~~d~~r~~~~~~~~~~~~g~~~~~a~~g~~~~r~~d~~~~Gt~a~~~~~~a~~LGf~~~~~~~~av~~RD~~~e   81 (486)
                      +|.+.|.||.+|++++.++++.. ++|| ++.+|++++ ..|          +++++++|||+.+..+| ++++||+++|
T Consensus       153 ~~~~~L~r~~~rL~~~~~~~~~~-~lgg-a~Gt~~~~~-~~~----------~~~~a~~LG~~~~~~~~-~~~~rD~~~e  218 (387)
T cd01360         153 LWYAEFKRHLERLKEARERILVG-KISG-AVGTYANLG-PEV----------EERVAEKLGLKPEPIST-QVIQRDRHAE  218 (387)
T ss_pred             HHHHHHHHHHHHHHHHHHHhHhh-ccch-HhhcCccCC-HHH----------HHHHHHHcCCCCCCCCC-cccCcHHHHH
Confidence            68999999999999999999853 4434 456777775 234          57999999999876555 7889999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHh--ccccccccccCCCCCccCCCCCCchHHHHHHHHHHHHHHHHHHHHHhhcccccc
Q psy14319         82 VTGVLSSLGASIHKLATDLRLLAH--MKEIEEPFESTQIGSSAMAYKRNPMRSERLCSLARFLMSLHQNSLATASTQWME  159 (486)
Q Consensus        82 ~~~~la~la~~LsRlA~DL~l~ss--~~el~e~~~~~~~GSSiMPqKrNP~~~E~ir~~a~~v~g~~~~~l~~~~~~~~e  159 (486)
                      +++++++++++|+|||+||++|++  |+||.+++..+++|||||||||||+.+|+++++++.+.|.... ++.+++.+|+
T Consensus       219 ~~~~la~~~~~L~ria~Dl~~~s~~e~gel~e~~~~~~~GSS~MPqKrNP~~~E~i~~~a~~~~g~~~~-~~~~~~~~~~  297 (387)
T cd01360         219 YLSTLALIASTLEKIATEIRHLQRTEVLEVEEPFSKGQKGSSAMPHKRNPILSENICGLARVIRSNVIP-ALENVALWHE  297 (387)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhhccccceecCCCCCCCCcCCCCCCCCCHHHHHHHHHHHHHHHHHHH-HHhhhHHhcC
Confidence            999999999999999999999996  9999999977889999999999999999999999999999874 5677899999


Q ss_pred             CCCchhhHhhhchHHHHHHHHHHHHHHHHhhhccccCHHhhhhhhcCCCCCCcccccccccCCCCCCCcHHHHHHHHHHH
Q psy14319        160 RTLDDSANRRLTLSESFLTTDCLLITLQNVLEGLVVYPKETYSIRIIPDNRLSSHHTTKRSGRPGDGDKVKALDRLVTKK  239 (486)
Q Consensus       160 rDl~~~~~~~~~l~~a~~~~~~~l~~~~~vl~~l~vn~erm~~~~~~~~~~g~~~~~~~~~~~~~~g~~~~~i~~~lA~~  239 (486)
                      ||+++|+.+|..+++++..+..++..+..++++++||++||++..  ....|              ...++.+...+++.
T Consensus       298 rd~~~~~~~~~~l~~~~~~~~~~l~~~~~~l~~l~v~~~rm~~~l--~~~~~--------------~~~ae~la~~L~~~  361 (387)
T cd01360         298 RDISHSSVERVILPDATILLDYILRRMTRVLENLVVYPENMRRNL--NLTKG--------------LIFSQRVLLALVEK  361 (387)
T ss_pred             CCcchhHHHHHHHHHHHHHHHHHHHHHHHHHccCEECHHHHHHHH--HhccC--------------HHHHHHHHHHHHHc
Confidence            999999999999999999999999999999999999999999832  11012              22467888887774


Q ss_pred             -cCCCCCcccc
Q psy14319        240 -AGFTSSHIIT  249 (486)
Q Consensus       240 -LGf~~a~~~~  249 (486)
                       +||+.+|...
T Consensus       362 g~~~r~Ah~~V  372 (387)
T cd01360         362 GMSREEAYEIV  372 (387)
T ss_pred             CCCHHHHHHHH
Confidence             8888876543

This subgroup contains bacterial and archeal proteins similar to ASL, a member of the Lyase class I family. Members of this family for the most part catalyze similar beta-elimination reactions in which a C-N or C-O bond is cleaved with the release of fumarate as one of the products. These proteins are active as tetramers. The four active sites of the homotetrameric enzyme are each formed by residues from three different subunits. ASL catalyzes two steps in the de novo purine biosynthesis: the conversion of 5-aminoimidazole-(N-succinylocarboxamide) ribotide (SAICAR) into 5-aminoimidazole-4-carboxamide ribotide (AICAR) and, the conversion of adenylsuccinate (SAMP) into adenosine monophosphate (AMP).

>cd01597 pCLME prokaryotic 3-carboxy-cis,cis-muconate cycloisomerase (CMLE)_like

Probab=100.00  E-value=1.3e-33  Score=299.67  Aligned_cols=192  Identities=25%  Similarity=0.278  Sum_probs=170.7

Q ss_pred             cHHHHHHHHHHHcCCCCCccccccccCccHHHHHHHHHHHHHHHHHHHHHHHHHHhh--hhhccccccCCCCcCcCCCCC
Q psy14319        228 KVKALDRLVTKKAGFTSSHIITGQTYSRKVDVIVTGVLSSLGASIHKLATDLRLLAH--MKEIEEPFESTQIGSSAMAYK  305 (486)
Q Consensus       228 ~~~~i~~~lA~~LGf~~a~~~~~~~~~rd~~~e~~~~l~~~~~~l~rla~Dl~l~ss--~~el~~~~~~~~~GSSiMPqK  305 (486)
                      .+..+++.+++.|||..+.  ..++++||+++|++++++.++++|+|||+||++|++  ||||.+|+.++++||||||||
T Consensus       198 ~~~~~~~~~a~~LGf~~~~--~~~~~~rd~~~e~~~~l~~~a~~l~rla~Dl~l~s~~e~gel~~~~~~~~~GSSiMPqK  275 (437)
T cd01597         198 QGLAVQEALAAELGLGVPA--IPWHTARDRIAELASFLALLTGTLGKIARDVYLLMQTEIGEVAEPFAKGRGGSSTMPHK  275 (437)
T ss_pred             cHHHHHHHHHHHcCCCCCC--CccccCcHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccceeecccCCCCCCCCCCCCC
Confidence            3467899999999999863  345799999999999999999999999999999999  999999987789999999999


Q ss_pred             CCchHHHHHHHHHHHHHHHhHHHHHHhhhhHhhhcccccCCCCCCccccchhhhhhccCCcchhhhhhccCCCCcccccc
Q psy14319        306 RNPMRSERLCSLARFLMSLHQNSLATASTQWMERTLDDSANRFPTKSVFSCVTQVKQHGKENDLVDRIRADPYFAPILNQ  385 (486)
Q Consensus       306 rNP~~~E~~~~~a~~~~g~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~g~~~d~~~~~~~~~~~~~~~~~  385 (486)
                      |||+.+|+++++|+++.|+.++++.. ...++|||+..|                                         
T Consensus       276 ~NP~~~E~i~~~a~~~~g~~~~~~~~-~~~~~erd~~~~-----------------------------------------  313 (437)
T cd01597         276 RNPVGCELIVALARRVPGLAALLLDA-MVQEHERDAGAW-----------------------------------------  313 (437)
T ss_pred             cCcHHHHHHHHHHHHHHHHHHHHHHh-chhhcccCCchh-----------------------------------------
Confidence            99999999999999999998776654 457777766432                                         


Q ss_pred             CCCCCCCccccCCchhHhhhhhhcccchHHHHHHHHHHHHHHHhchhCCeeCHHHHHHHHhccCChhHHHHHHHHHHHcC
Q psy14319        386 MPTLLDPKSFYGRAPEQQRLSAKGIHTLSESFLTTDCLLITLQNVLEGLVVYPKVIQRHIDQELPFMATENIIMAMVKAG  465 (486)
Q Consensus       386 ~~~~~~p~~~~~~~~~q~~~~~~~~~~l~~~~~~~~~~l~~~~~~l~~l~v~~~~m~~~l~~~~~~~~a~~~~~~L~~~g  465 (486)
                                           ..+|..+++++.++..++.++..++++++||++||+++++.+.++++||.+++.|++ |
T Consensus       314 ---------------------~~~~~~l~~~~~~~~~~l~~~~~~l~~l~v~~~rm~~~~~~~~~~~~ae~l~~~l~~-~  371 (437)
T cd01597         314 ---------------------HAEWIALPEIFLLASGALEQAEFLLSGLEVNEDRMRANLDLTGGLILSEAVMMALAP-K  371 (437)
T ss_pred             ---------------------HHHHHHHHHHHHHHHHHHHHHHHHHcCCEECHHHHHHHHHhccChHHHHHHHHHHHH-h
Confidence                                 114678999999999999999999999999999999999988899999999999998 5


Q ss_pred             CChHHHHHHHHHHHHHhhhc
Q psy14319        466 GDRQVCHEKIRVLSHQAGAQ  485 (486)
Q Consensus       466 ~~fr~Ah~~v~~~~~~a~~~  485 (486)
                      +|||+||++|+++++++.++
T Consensus       372 i~~~~Ah~~v~~~~~~a~~~  391 (437)
T cd01597         372 LGRQEAHDLVYEACMRAVEE  391 (437)
T ss_pred             cCHHHHHHHHHHHHHHHHHh
Confidence            99999999999999987654

This subgroup contains pCLME and related proteins, and belongs to the Lyase class I family. Members of this family for the most part catalyze similar beta-elimination reactions in which a C-N or C-O bond is cleaved with the release of fumarate as one of the products. These proteins are active as tetramers. The four active sites of the homotetrameric enzyme are each formed by residues from three different subunits. CMLE catalyzes the cyclization of 3-carboxy-cis,cis-muconate (3CM) to 4-carboxy-muconolactone in the beta-ketoadipate pathway. This pathway is responsible for the catabolism of a variety of aromatic compounds into intermediates of the citric cycle in prokaryotic and eukaryotic micro-organisms.

>PRK06705 argininosuccinate lyase; Provisional

Probab=100.00  E-value=3e-34  Score=308.20  Aligned_cols=192  Identities=15%  Similarity=0.109  Sum_probs=161.5

Q ss_pred             CCCCcHHHHHHHHHHHcCCCCCc-cccccccCccHHHHHHHHHHHHHHHHHHHHHHHHHHhh--hh--hccccccCCCCc
Q psy14319        224 GDGDKVKALDRLVTKKAGFTSSH-IITGQTYSRKVDVIVTGVLSSLGASIHKLATDLRLLAH--MK--EIEEPFESTQIG  298 (486)
Q Consensus       224 ~~g~~~~~i~~~lA~~LGf~~a~-~~~~~~~~rd~~~e~~~~l~~~~~~l~rla~Dl~l~ss--~~--el~~~~~~~~~G  298 (486)
                      +.|+..+.+++++++.|||..+. |..+++++||+++|++++++.++.+|+|||+||++|++  ||  |+.++|   ++|
T Consensus       207 g~gt~~~~~r~~~a~~LGf~~~~~ns~~a~~~rD~~~e~~~~la~~~~~L~Ria~Dl~~~ss~e~g~iel~e~~---~~g  283 (502)
T PRK06705        207 LSTTSFPIKRERVADLLGFTNVIENSYDAVAGADYLLEVSSLLMVMMTNTSRWIHDFLLLATKEYDGITVARPY---VQI  283 (502)
T ss_pred             hccCCchHHHHHHHHHcCCCCCcCCHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCeeeecCCC---CCc
Confidence            45556789999999999999876 44456799999999999999999999999999999999  88  666554   589


Q ss_pred             CcCCCCCCCchHHHHHHHHHHHHHHHhHHHHHHhhhhHhhhcccccCCCCCCccccchhhhhhccCCcchhhhhhccCCC
Q psy14319        299 SSAMAYKRNPMRSERLCSLARFLMSLHQNSLATASTQWMERTLDDSANRFPTKSVFSCVTQVKQHGKENDLVDRIRADPY  378 (486)
Q Consensus       299 SSiMPqKrNP~~~E~~~~~a~~~~g~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~g~~~d~~~~~~~~~~  378 (486)
                      ||||||||||+.+|++|++++++.|.+++++.. +.++++++..                         |+         
T Consensus       284 SSiMPqKrNP~~~E~ir~~a~~~~g~~~~~l~~-~~~~~~~~~~-------------------------d~---------  328 (502)
T PRK06705        284 SSIMPQKRNPVSIEHARAITSSALGEAFTVFQM-IHNTPFGDIV-------------------------DT---------  328 (502)
T ss_pred             cCCCCCCcCCHHHHHHHHHHHHHHHHHHHHHHH-hcCCcchhhh-------------------------hh---------
Confidence            999999999999999999999999999888755 4555555432                         21         


Q ss_pred             CccccccCCCCCCCccccCCchhHhhhhhhcccchHHHHHHHH---HHHHHHHhchhCCeeCHHHHHHHHhccCChhHHH
Q psy14319        379 FAPILNQMPTLLDPKSFYGRAPEQQRLSAKGIHTLSESFLTTD---CLLITLQNVLEGLVVYPKVIQRHIDQELPFMATE  455 (486)
Q Consensus       379 ~~~~~~~~~~~~~p~~~~~~~~~q~~~~~~~~~~l~~~~~~~~---~~l~~~~~~l~~l~v~~~~m~~~l~~~~~~~~a~  455 (486)
                                                    .|..+++++..++   .++..+..++++++||++||+++++.  ++++||
T Consensus       329 ------------------------------q~~~~~~~~~~~~~~~~~l~~~~~~l~~l~v~~~rm~~~~~~--g~~~At  376 (502)
T PRK06705        329 ------------------------------EDDLQPYLYKGIEKAIRVFCIMNAVIRTMKVEEDTLKRRSYK--HAITIT  376 (502)
T ss_pred             ------------------------------HhhhhhHHHHHHHHHHHHHHHHHHHHCcCEECHHHHHHHHhc--CchHHH
Confidence                                          1233444444444   44999999999999999999999976  789999


Q ss_pred             HHHHHHHHc-CCChHHHHHHHHHHHHHhhhc
Q psy14319        456 NIIMAMVKA-GGDRQVCHEKIRVLSHQAGAQ  485 (486)
Q Consensus       456 ~~~~~L~~~-g~~fr~Ah~~v~~~~~~a~~~  485 (486)
                      ++|+.||++ |+|||+||++|+++++.+.++
T Consensus       377 ~la~~Lv~~~Gl~fr~Ah~iV~~~v~~a~~~  407 (502)
T PRK06705        377 DFADVLTKNYGIPFRHAHHAASVIANMSLEQ  407 (502)
T ss_pred             HHHHHHHHhcCCCHHHHHHHHHHHHHHHHHh
Confidence            999999998 999999999999999998653

>cd01595 Adenylsuccinate_lyase_like Adenylsuccinate lyase (ASL)_like

Probab=100.00  E-value=2.1e-34  Score=300.83  Aligned_cols=216  Identities=31%  Similarity=0.376  Sum_probs=180.3

Q ss_pred             hhhhhHhccHHHHHHHHHHHhhhcCCCceeecccCcccc--cchhhhhhhhhhhhHHHHHHcCCCCCCCcccccccccHH
Q psy14319          2 KFYKYVLGDGDKVKALDRLVTKKAGFNSSHIITGQTYSR--KVDVIVTGVLSSLGASIHKKAGFNSSHIITGQTYSRKVD   79 (486)
Q Consensus         2 ~~~~~~~~d~~r~~~~~~~~~~~~g~~~~~a~~g~~~~r--~~d~~~~Gt~a~~~~~~a~~LGf~~~~~~~~av~~RD~~   79 (486)
                      +|.+.|.||.+|++++.++++.. ++|| .+.+|+.++.  +.|          .+++|++|||..+. ..+++++||++
T Consensus       151 ~~~~~L~r~~~rL~~~~~~~~~~-~lGg-a~G~g~~~~~~~~~~----------~~~~a~~LGl~~~~-~~~~~~~rd~~  217 (381)
T cd01595         151 VWAAELLRHLERLEEARERVLVG-GISG-AVGTHASLGPKGPEV----------EERVAEKLGLKVPP-ITTQIEPRDRI  217 (381)
T ss_pred             HHHHHHHHHHHHHHHHHHhchhh-hccc-HhhhHhhcCCcHHHH----------HHHHHHHcCCCCCC-CCCCcccchHH
Confidence            68999999999999999999753 5534 5556665521  244          46899999996544 33457899999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHh--ccccccccccCCCCCccCCCCCCchHHHHHHHHHHHHHHHHHHHHHhhcccc
Q psy14319         80 VIVTGVLSSLGASIHKLATDLRLLAH--MKEIEEPFESTQIGSSAMAYKRNPMRSERLCSLARFLMSLHQNSLATASTQW  157 (486)
Q Consensus        80 ~e~~~~la~la~~LsRlA~DL~l~ss--~~el~e~~~~~~~GSSiMPqKrNP~~~E~ir~~a~~v~g~~~~~l~~~~~~~  157 (486)
                      +|++++++.++++|+|||+|+++|++  |+||.+|+.++++|||||||||||+.+|+++++++++.|+...++. .++++
T Consensus       218 ~e~~~~l~~~~~~l~ria~Dl~~~~s~e~gev~~~~~~~~~GSS~MPqK~NP~~~E~i~~~a~~~~g~~~~~~~-~~~~~  296 (381)
T cd01595         218 AELLSALALIAGTLEKIATDIRLLQRTEIGEVEEPFEKGQVGSSTMPHKRNPIDSENIEGLARLVRALAAPALE-NLVQW  296 (381)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhccccceeccccCCCCCCccCCCcCCcHHHHHHHHHHHHHHHHHHHHHH-hhhHh
Confidence            99999999999999999999999997  9999999877899999999999999999999999999999987554 45999


Q ss_pred             ccCCCchhhHhhhchHHHHHHHHHHHHHHHHhhhccccCHHhhhhhhcCCCCCCcccccccccCCCCCCCcHHHHHHHHH
Q psy14319        158 MERTLDDSANRRLTLSESFLTTDCLLITLQNVLEGLVVYPKETYSIRIIPDNRLSSHHTTKRSGRPGDGDKVKALDRLVT  237 (486)
Q Consensus       158 ~erDl~~~~~~~~~l~~a~~~~~~~l~~~~~vl~~l~vn~erm~~~~~~~~~~g~~~~~~~~~~~~~~g~~~~~i~~~lA  237 (486)
                      ||||+++|+.+|..+++++..+..++.++..++++|+||+++|++..  ...-|+              ..++.+...+.
T Consensus       297 ~erd~~~~~~~~~~l~~~~~~~~~~l~~~~~~l~~l~v~~~~m~~~l--~~~~g~--------------~~ae~~~~~L~  360 (381)
T cd01595         297 HERDLSDSSVERNILPDAFLLLDAALSRLQGLLEGLVVNPERMRRNL--DLTWGL--------------ILSEAVMMALA  360 (381)
T ss_pred             hccCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCEECHHHHHHHH--HhccCH--------------HHHHHHHHHHH
Confidence            99999999999999999999999999999999999999999999832  111122              22466677766


Q ss_pred             HH-cCCCCCcc
Q psy14319        238 KK-AGFTSSHI  247 (486)
Q Consensus       238 ~~-LGf~~a~~  247 (486)
                      +. +||+.+|.
T Consensus       361 ~~g~g~~~Ah~  371 (381)
T cd01595         361 KKGLGRQEAYE  371 (381)
T ss_pred             HhCCCHhHHHH
Confidence            65 88887754

This group contains ASL, prokaryotic-type 3-carboxy-cis,cis-muconate cycloisomerase (pCMLE), and related proteins. These proteins are members of the Lyase class I family. Members of this family for the most part catalyze similar beta-elimination reactions in which a C-N or C-O bond is cleaved with the release of fumarate as one of the products. These proteins are active as tetramers. The four active sites of the homotetrameric enzyme are each formed by residues from three different subunits. ASL catalyzes two steps in the de novo purine biosynthesis: the conversion of 5-aminoimidazole-(N-succinylocarboxamide) ribotide (SAICAR) into 5-aminoimidazole-4-carboxamide ribotide (AICAR) and; the conversion of adenylsuccinate (SAMP) into adenosine monophosphate (AMP). pCMLE catalyzes the cyclization of 3-carboxy-cis,cis-muconate (3CM) to 4-carboxy-muconolactone, in the beta-ketoadipate pathway. ASL deficiency has been linked t

>PRK09053 3-carboxy-cis,cis-muconate cycloisomerase; Provisional

Probab=100.00  E-value=1.2e-33  Score=300.92  Aligned_cols=205  Identities=21%  Similarity=0.214  Sum_probs=180.4

Q ss_pred             CCCCCCcccccccccCCCCCCCcHHHHHHHHHHHcCCCCCccccccccCccHHHHHHHHHHHHHHHHHHHHHHHHHHhh-
Q psy14319        206 IPDNRLSSHHTTKRSGRPGDGDKVKALDRLVTKKAGFTSSHIITGQTYSRKVDVIVTGVLSSLGASIHKLATDLRLLAH-  284 (486)
Q Consensus       206 ~~~~~g~~~~~~~~~~~~~~g~~~~~i~~~lA~~LGf~~a~~~~~~~~~rd~~~e~~~~l~~~~~~l~rla~Dl~l~ss-  284 (486)
                      ++|..|+..         ..+..+..+.+++++.|||..+.  ..|+++||+++|++++|+.++++|+|||+||++|++ 
T Consensus       194 lGgavGt~~---------~~~~~~~~v~~~~a~~LGl~~~~--~~~~~~rD~~~e~~~~la~la~~L~kia~Di~ll~~~  262 (452)
T PRK09053        194 FGGAAGTLA---------SLGEQALPVAQALAAELQLALPA--LPWHTQRDRIAEFASALGLLAGTLGKIARDVSLLMQT  262 (452)
T ss_pred             ccchhhccc---------ccccchHHHHHHHHHHcCCCCCC--CCcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence            566677742         22334567789999999999753  235689999999999999999999999999999998 


Q ss_pred             -hhhccccccCCCCcCcCCCCCCCchHHHHHHHHHHHHHHHhHHHHHHhhhhHhhhcccccCCCCCCccccchhhhhhcc
Q psy14319        285 -MKEIEEPFESTQIGSSAMAYKRNPMRSERLCSLARFLMSLHQNSLATASTQWMERTLDDSANRFPTKSVFSCVTQVKQH  363 (486)
Q Consensus       285 -~~el~~~~~~~~~GSSiMPqKrNP~~~E~~~~~a~~~~g~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~  363 (486)
                       |||+.+|+..+++|||||||||||+.+|+++++|+++.|+..+++ .+...++|||...|.                  
T Consensus       263 e~gev~e~~~~~~~GSSiMP~KrNPv~~E~i~~~a~~v~g~~~~~~-~~~~~~~erd~~~~~------------------  323 (452)
T PRK09053        263 EVGEVFEPAAAGKGGSSTMPHKRNPVGCAAVLTAATRAPGLVATLF-AAMPQEHERALGGWH------------------  323 (452)
T ss_pred             ccchhhccccCCCCCcCCCCCCCCchHHHHHHHHHHHHHHHHHHHH-HhChhhhcccCCccH------------------
Confidence             999999988899999999999999999999999999999999885 557789998875431                  


Q ss_pred             CCcchhhhhhccCCCCccccccCCCCCCCccccCCchhHhhhhhhcccchHHHHHHHHHHHHHHHhchhCCeeCHHHHHH
Q psy14319        364 GKENDLVDRIRADPYFAPILNQMPTLLDPKSFYGRAPEQQRLSAKGIHTLSESFLTTDCLLITLQNVLEGLVVYPKVIQR  443 (486)
Q Consensus       364 g~~~d~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~q~~~~~~~~~~l~~~~~~~~~~l~~~~~~l~~l~v~~~~m~~  443 (486)
                                                                  .+|..+++++.++..++..+..++++|+||++||++
T Consensus       324 --------------------------------------------~~~~~l~~~~~~~~~al~~~~~~l~~l~v~~erm~~  359 (452)
T PRK09053        324 --------------------------------------------AEWDTLPELACLAAGALAQMAQIVEGLEVDAARMRA  359 (452)
T ss_pred             --------------------------------------------HHHHHHHHHHHHHHHHHHHHHHHHcCCEECHHHHHH
Confidence                                                        146789999999999999999999999999999999


Q ss_pred             HHhccCChhHHHHHHHHHHHcCCChHHHHHHHHHHHHHhhhc
Q psy14319        444 HIDQELPFMATENIIMAMVKAGGDRQVCHEKIRVLSHQAGAQ  485 (486)
Q Consensus       444 ~l~~~~~~~~a~~~~~~L~~~g~~fr~Ah~~v~~~~~~a~~~  485 (486)
                      +++.+.++++||.+++.|++. +++++||++|+++++++.++
T Consensus       360 ~l~~s~~~~~ae~~~~~La~~-lgr~~Ah~iV~~~~~~a~~~  400 (452)
T PRK09053        360 NLDLTHGLILAEAVMLALADR-IGRLDAHHLVEQASKRAVAE  400 (452)
T ss_pred             HHHhcCCHHHHHHHHHHHHhc-cCHHHHHHHHHHHHHHHHHH
Confidence            999999999999999999998 89999999999999988654

>PRK07492 adenylosuccinate lyase; Provisional

Probab=100.00  E-value=8.7e-34  Score=299.95  Aligned_cols=214  Identities=26%  Similarity=0.334  Sum_probs=182.3

Q ss_pred             hhhhhHhccHHHHHHHHHHHhhhcCCCceeecccCcccccchhhhhhhhhhhhHHHHHHcCCCCCCCcccccccccHHHH
Q psy14319          2 KFYKYVLGDGDKVKALDRLVTKKAGFNSSHIITGQTYSRKVDVIVTGVLSSLGASIHKKAGFNSSHIITGQTYSRKVDVI   81 (486)
Q Consensus         2 ~~~~~~~~d~~r~~~~~~~~~~~~g~~~~~a~~g~~~~r~~d~~~~Gt~a~~~~~~a~~LGf~~~~~~~~av~~RD~~~e   81 (486)
                      .|++.|.||.+|++++.+++... +|+|  | .|+.++  +|+       .+.++++++|||..+..+| ++.+||++++
T Consensus       159 ~~~~~l~r~~~rL~~~~~~~~~~-~lgG--A-vGT~~~--~~~-------~~~~~~a~~LGl~~~~~~~-~v~~RD~~~e  224 (435)
T PRK07492        159 RFYAEFARNRERLVAAREEIATC-AISG--A-VGTFAN--IDP-------RVEEHVAKKLGLKPEPVST-QVIPRDRHAM  224 (435)
T ss_pred             HHHHHHHHHHHHHHHHHHhhhhc-cCcc--c-ccCCcc--CCh-------HHHHHHHHHhCCCCCCccc-cccccHHHHH
Confidence            58999999999999999999743 5534  4 477775  664       3357999999999876554 6889999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHh--ccccccccccCCCCCccCCCCCCchHHHHHHHHHHHHHHHHHHHHHhhcccccc
Q psy14319         82 VTGVLSSLGASIHKLATDLRLLAH--MKEIEEPFESTQIGSSAMAYKRNPMRSERLCSLARFLMSLHQNSLATASTQWME  159 (486)
Q Consensus        82 ~~~~la~la~~LsRlA~DL~l~ss--~~el~e~~~~~~~GSSiMPqKrNP~~~E~ir~~a~~v~g~~~~~l~~~~~~~~e  159 (486)
                      +++++++++++|+|||+||++|++  |+|+.|+++++++|||+|||||||+.+|+++++++.+.|.... ++.+++.+||
T Consensus       225 ~~~~la~~~~~L~ria~Di~~l~~~e~~El~e~~~~g~~GSS~MPhKrNP~~~E~i~~~a~~~~~~~~~-~~~~~~~~~e  303 (435)
T PRK07492        225 FFATLGVIASSIERLAIEIRHLQRTEVLEAEEFFSPGQKGSSAMPHKRNPVLTENLTGLARLVRSYVVP-AMENVALWHE  303 (435)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhccccchhccccCCCCCCCCCCCCCCCcHHHHHHHHHHHHHHHHHHH-HHHhcchhhc
Confidence            999999999999999999999995  9999999988999999999999999999999999999998764 5567899999


Q ss_pred             CCCchhhHhhhchHHHHHHHHHHHHHHHHhhhccccCHHhhhhhhcCCCCCCcccccccccCCCCCCCcHHHHHHHHHHH
Q psy14319        160 RTLDDSANRRLTLSESFLTTDCLLITLQNVLEGLVVYPKETYSIRIIPDNRLSSHHTTKRSGRPGDGDKVKALDRLVTKK  239 (486)
Q Consensus       160 rDl~~~~~~~~~l~~a~~~~~~~l~~~~~vl~~l~vn~erm~~~~~~~~~~g~~~~~~~~~~~~~~g~~~~~i~~~lA~~  239 (486)
                      ||++.|..+|..+|+++..+..++..+..++++|+||++||++..  ....|.              ..++.+...+++.
T Consensus       304 RD~~~~~~e~~~lp~~~~~~~~~l~~~~~~l~~L~v~~~rm~~nl--~~~~g~--------------i~ae~~~~~L~~~  367 (435)
T PRK07492        304 RDISHSSVERMIGPDATITLDFALNRLAGVIEKLVVYPENMLKNL--NKFGGL--------------VHSQRVLLALTQA  367 (435)
T ss_pred             cCChHHHHhhhHHHHHHHHHHHHHHHHHHHHccCEECHHHHHHHH--hhcCCh--------------hHHHHHHHHHHHc
Confidence            999999999999999999999999999999999999999999832  111121              2357777777764


Q ss_pred             -cCCCCCc
Q psy14319        240 -AGFTSSH  246 (486)
Q Consensus       240 -LGf~~a~  246 (486)
                       +||+.+|
T Consensus       368 g~~r~~Ah  375 (435)
T PRK07492        368 GVSREDAY  375 (435)
T ss_pred             CCCHHHHH
Confidence             7777764

>PRK07380 adenylosuccinate lyase; Provisional

Probab=100.00  E-value=6.4e-34  Score=300.61  Aligned_cols=214  Identities=26%  Similarity=0.312  Sum_probs=182.6

Q ss_pred             hhhhhHhccHHHHHHHHHHHhhhcCCCceeecccCcccccchhhhhhhhhhhhHHHHHHcCCCCCCCcccccccccHHHH
Q psy14319          2 KFYKYVLGDGDKVKALDRLVTKKAGFNSSHIITGQTYSRKVDVIVTGVLSSLGASIHKKAGFNSSHIITGQTYSRKVDVI   81 (486)
Q Consensus         2 ~~~~~~~~d~~r~~~~~~~~~~~~g~~~~~a~~g~~~~r~~d~~~~Gt~a~~~~~~a~~LGf~~~~~~~~av~~RD~~~e   81 (486)
                      .|++.|.||.+|++++.+++... ++  ++|+ |+.++  +|+       .+..+++++|||..+..+| ++.+||+++|
T Consensus       156 ~~~~~l~r~~~RL~~~~~~~~~~-~l--~GAv-Gt~~~--~~~-------~~~~~~a~~LGl~~~~~~~-~v~~rd~~~e  221 (431)
T PRK07380        156 GWLAETLRNRERLVRLREDIAVG-QI--SGAV-GTYAN--TDP-------RVEAITCQKLGLKPDTAST-QVISRDRHAE  221 (431)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhcc-Cc--chhh-cCccc--CCh-------hHHHHHHHHcCCCCCCCCC-CccCcHHHHH
Confidence            68999999999999999998742 45  2555 77665  664       2345899999999887654 7899999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHh--ccccccccccCCCCCccCCCCCCchHHHHHHHHHHHHHHHHHHHHHhhcccccc
Q psy14319         82 VTGVLSSLGASIHKLATDLRLLAH--MKEIEEPFESTQIGSSAMAYKRNPMRSERLCSLARFLMSLHQNSLATASTQWME  159 (486)
Q Consensus        82 ~~~~la~la~~LsRlA~DL~l~ss--~~el~e~~~~~~~GSSiMPqKrNP~~~E~ir~~a~~v~g~~~~~l~~~~~~~~e  159 (486)
                      ++++++.++++|+|||+||++|++  |+|+.|+|+++++|||+|||||||+.+|+++++|+.+.|.+.. ++.+++.+||
T Consensus       222 ~~~~la~~a~~L~kia~Di~~l~~~~~~el~e~~~~g~~GSS~MPhKrNP~~~E~i~~~a~~~~g~~~~-~~~~~~~~~e  300 (431)
T PRK07380        222 YVQTLALVGASLERFATEIRNLQRTDVLEVEEYFAKGQKGSSAMPHKRNPIRSERLSGLARVLRSYAVA-ALENVALWHE  300 (431)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhcccCceeecccCCCCCCCCcCCCCCCCCHHHHHHHHHHHHHHHHHHH-HHHhchhhhc
Confidence            999999999999999999999996  8999999988999999999999999999999999999999885 5667899999


Q ss_pred             CCCchhhHhhhchHHHHHHHHHHHHHHHHhhhccccCHHhhhhhhcCCCCCCcccccccccCCCCCCCcHHHHHHHHHH-
Q psy14319        160 RTLDDSANRRLTLSESFLTTDCLLITLQNVLEGLVVYPKETYSIRIIPDNRLSSHHTTKRSGRPGDGDKVKALDRLVTK-  238 (486)
Q Consensus       160 rDl~~~~~~~~~l~~a~~~~~~~l~~~~~vl~~l~vn~erm~~~~~~~~~~g~~~~~~~~~~~~~~g~~~~~i~~~lA~-  238 (486)
                      ||+++|..+|..+++++..+..++..+..++++|+||++||++...  ...|.              ...+.+...+++ 
T Consensus       301 RD~~~~~~e~~~l~~~~~~~~~~l~~~~~~l~~L~v~~~rm~~nl~--~~~g~--------------~~ae~~~~~Lv~~  364 (431)
T PRK07380        301 RDISHSSVERVMLPDCSILLHFMLREMTDLVKNLLVYPENMRRNMN--IYGGV--------------VFSQRVLLALVEK  364 (431)
T ss_pred             cCchHHHHHHHHHHHHHHHHHHHHHHHHHHHccCEECHHHHHHHHH--hcCCh--------------HHHHHHHHHHHHc
Confidence            9999999999999999999999999999999999999999998321  11122              235777777766 


Q ss_pred             HcCCCCCc
Q psy14319        239 KAGFTSSH  246 (486)
Q Consensus       239 ~LGf~~a~  246 (486)
                      .+||+.+|
T Consensus       365 gl~r~~Ah  372 (431)
T PRK07380        365 GMSREEAY  372 (431)
T ss_pred             CCCHHHHH
Confidence            47777764

>KOG1316|consensus

Probab=100.00  E-value=2.5e-34  Score=283.79  Aligned_cols=192  Identities=18%  Similarity=0.129  Sum_probs=170.0

Q ss_pred             CCcHHHHHHHHHHHcCCCCCc-cccccccCccHHHHHHHHHHHHHHHHHHHHHHHHHHhh--hhhccccccCCCCcCcCC
Q psy14319        226 GDKVKALDRLVTKKAGFTSSH-IITGQTYSRKVDVIVTGVLSSLGASIHKLATDLRLLAH--MKEIEEPFESTQIGSSAM  302 (486)
Q Consensus       226 g~~~~~i~~~lA~~LGf~~a~-~~~~~~~~rd~~~e~~~~l~~~~~~l~rla~Dl~l~ss--~~el~~~~~~~~~GSSiM  302 (486)
                      |.....+++.+++.|||..+. |...+++.||+++|++.+.++++.+|+|+|+|+.+|++  ||.+... ++..+|||+|
T Consensus       206 Gnpl~iDR~~la~~LgF~~v~~NSm~AvsDRDFVvef~fw~sm~m~HlSRlaEdlIiy~t~EF~Fv~lS-DaySTGSSlM  284 (464)
T KOG1316|consen  206 GNPLGIDREFLAEELGFEGVIMNSMDAVSDRDFVVEFLFWASMVMTHLSRLAEDLIIYSTKEFGFVTLS-DAYSTGSSLM  284 (464)
T ss_pred             CCCCCccHHHHHHhcCCcccchhhhhccccchhHHHHHHHHHHHHHHHHHHhhHhheeeccccCceeec-cccccCcccC
Confidence            445678899999999999766 78899999999999999999999999999999999999  8888764 6778999999


Q ss_pred             CCCCCchHHHHHHHHHHHHHHHhHHHHHHhhhhHhhhcccccCCCCCCccccchhhhhhccCCcchhhhhhccCCCCccc
Q psy14319        303 AYKRNPMRSERLCSLARFLMSLHQNSLATASTQWMERTLDDSANRFPTKSVFSCVTQVKQHGKENDLVDRIRADPYFAPI  382 (486)
Q Consensus       303 PqKrNP~~~E~~~~~a~~~~g~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~g~~~d~~~~~~~~~~~~~~  382 (486)
                      ||||||+.+|.+|+++++++|.+.+++.+..                                         ++|..+  
T Consensus       285 PQKKNpDslELlRgksgrV~gdl~g~lmt~K-----------------------------------------G~PstY--  321 (464)
T KOG1316|consen  285 PQKKNPDSLELLRGKSGRVFGDLTGLLMTLK-----------------------------------------GLPSTY--  321 (464)
T ss_pred             CCCCCCCHHHHhccccceehhhhHHHHHHhc-----------------------------------------CCcccc--
Confidence            9999999999999999999999999987631                                         112111  


Q ss_pred             cccCCCCCCCccccCCchhHhhhhhhcccchHHHHHHHHHHHHHHHhchhCCeeCHHHHHHHHhccCChhHHHHHHHHHH
Q psy14319        383 LNQMPTLLDPKSFYGRAPEQQRLSAKGIHTLSESFLTTDCLLITLQNVLEGLVVYPKVIQRHIDQELPFMATENIIMAMV  462 (486)
Q Consensus       383 ~~~~~~~~~p~~~~~~~~~q~~~~~~~~~~l~~~~~~~~~~l~~~~~~l~~l~v~~~~m~~~l~~~~~~~~a~~~~~~L~  462 (486)
                                     |.+.|+++     +++.+++.+...++.+...++.+++||+++|.+.+..   -+.|+++|++||
T Consensus       322 ---------------nkDlQeDK-----ep~Fds~~tv~~~l~v~tgv~stltvn~e~m~~aLt~---dmlATdlA~YLV  378 (464)
T KOG1316|consen  322 ---------------NKDLQEDK-----EPLFDSSKTVSDSLQVATGVISTLTVNQENMEKALTP---DMLATDLAYYLV  378 (464)
T ss_pred             ---------------ccchhhhh-----hHHHhhHHHHHHHHHHHHHHhhheeECHHHHhhccCc---hhhHhHHHHHHH
Confidence                           23448887     6899999999999999999999999999999999754   489999999999


Q ss_pred             HcCCChHHHHHHHHHHHHHhhh
Q psy14319        463 KAGGDRQVCHEKIRVLSHQAGA  484 (486)
Q Consensus       463 ~~g~~fr~Ah~~v~~~~~~a~~  484 (486)
                      ++|+|||++||+++.+|+.|.+
T Consensus       379 rKGvPFRqtHhisG~~V~~ae~  400 (464)
T KOG1316|consen  379 RKGVPFRQTHHISGKAVRMAEE  400 (464)
T ss_pred             HcCCCchhhhhhhHHHHHHHHH
Confidence            9999999999999999999865

>PRK06705 argininosuccinate lyase; Provisional

Probab=100.00  E-value=2.7e-34  Score=308.55  Aligned_cols=208  Identities=14%  Similarity=0.166  Sum_probs=172.4

Q ss_pred             ChhhhhHhccHHHHHHHHHHHhh-hcCCCceeecccCcccccchhhhhhhhhhhhHHHHHHcCCCCCC-CcccccccccH
Q psy14319          1 MKFYKYVLGDGDKVKALDRLVTK-KAGFNSSHIITGQTYSRKVDVIVTGVLSSLGASIHKKAGFNSSH-IITGQTYSRKV   78 (486)
Q Consensus         1 ~~~~~~~~~d~~r~~~~~~~~~~-~~g~~~~~a~~g~~~~r~~d~~~~Gt~a~~~~~~a~~LGf~~~~-~~~~av~~RD~   78 (486)
                      ++|++.|.||.+|+.++.++++. ++|   +++++|++|+  +||          +++|++|||+.|. |+||++++||+
T Consensus       177 ~~~~~~l~r~~~rL~~~~~r~~~~plG---gaag~gt~~~--~~r----------~~~a~~LGf~~~~~ns~~a~~~rD~  241 (502)
T PRK06705        177 LAIYDTMQRDLERMKKTYKLLNQSPMG---AAALSTTSFP--IKR----------ERVADLLGFTNVIENSYDAVAGADY  241 (502)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhCcCCch---hhhhccCCch--HHH----------HHHHHHcCCCCCcCCHHHHHhccHH
Confidence            36999999999999999999984 355   6889999997  884          7999999999997 78899999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHh--cc--ccccccccCCCCCccCCCCCCchHHHHHHHHHHHHHHHHHHHHHhhc
Q psy14319         79 DVIVTGVLSSLGASIHKLATDLRLLAH--MK--EIEEPFESTQIGSSAMAYKRNPMRSERLCSLARFLMSLHQNSLATAS  154 (486)
Q Consensus        79 ~~e~~~~la~la~~LsRlA~DL~l~ss--~~--el~e~~~~~~~GSSiMPqKrNP~~~E~ir~~a~~v~g~~~~~l~~~~  154 (486)
                      ++|+++++++++++|+|||+||++|++  |+  |++|+|.   +|||||||||||+++|++|++++++.|.+.+++ ..+
T Consensus       242 ~~e~~~~la~~~~~L~Ria~Dl~~~ss~e~g~iel~e~~~---~gSSiMPqKrNP~~~E~ir~~a~~~~g~~~~~l-~~~  317 (502)
T PRK06705        242 LLEVSSLLMVMMTNTSRWIHDFLLLATKEYDGITVARPYV---QISSIMPQKRNPVSIEHARAITSSALGEAFTVF-QMI  317 (502)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCeeeecCCCC---CccCCCCCCcCCHHHHHHHHHHHHHHHHHHHHH-HHh
Confidence            999999999999999999999999996  77  8888774   699999999999999999999999999998744 555


Q ss_pred             cccccCCCchhhHhhh---chHHHHHHHHHHHHHHHHhhhccccCHHhhhhhhcCCCCCCcccccccccCCCCCCCcHHH
Q psy14319        155 TQWMERTLDDSANRRL---TLSESFLTTDCLLITLQNVLEGLVVYPKETYSIRIIPDNRLSSHHTTKRSGRPGDGDKVKA  231 (486)
Q Consensus       155 ~~~~erDl~~~~~~~~---~l~~a~~~~~~~l~~~~~vl~~l~vn~erm~~~~~~~~~~g~~~~~~~~~~~~~~g~~~~~  231 (486)
                      .+++++|..+.  +|.   .+++++..+..++..+..++++++||++||++..                  ...+..+++
T Consensus       318 ~~~~~~~~~d~--q~~~~~~~~~~~~~~~~~l~~~~~~l~~l~v~~~rm~~~~------------------~~g~~~At~  377 (502)
T PRK06705        318 HNTPFGDIVDT--EDDLQPYLYKGIEKAIRVFCIMNAVIRTMKVEEDTLKRRS------------------YKHAITITD  377 (502)
T ss_pred             cCCcchhhhhh--HhhhhhHHHHHHHHHHHHHHHHHHHHCcCEECHHHHHHHH------------------hcCchHHHH
Confidence            55656665553  333   3445555555669999999999999999999832                  112235788


Q ss_pred             HHHHHHHH--cCCCCCcc
Q psy14319        232 LDRLVTKK--AGFTSSHI  247 (486)
Q Consensus       232 i~~~lA~~--LGf~~a~~  247 (486)
                      +.+.+++.  +||+.+|.
T Consensus       378 la~~Lv~~~Gl~fr~Ah~  395 (502)
T PRK06705        378 FADVLTKNYGIPFRHAHH  395 (502)
T ss_pred             HHHHHHHhcCCCHHHHHH
Confidence            88888774  88887754

>PRK08470 adenylosuccinate lyase; Provisional

Probab=100.00  E-value=9.3e-34  Score=300.58  Aligned_cols=214  Identities=25%  Similarity=0.309  Sum_probs=178.3

Q ss_pred             hhhhhHhccHHHHHHHHHHHhhhcCCCceeecccCcccccchhhhhhhhhhhhHHHHHHcCCCCCCCcccccccccHHHH
Q psy14319          2 KFYKYVLGDGDKVKALDRLVTKKAGFNSSHIITGQTYSRKVDVIVTGVLSSLGASIHKKAGFNSSHIITGQTYSRKVDVI   81 (486)
Q Consensus         2 ~~~~~~~~d~~r~~~~~~~~~~~~g~~~~~a~~g~~~~r~~d~~~~Gt~a~~~~~~a~~LGf~~~~~~~~av~~RD~~~e   81 (486)
                      +|++.|.||.+|++++.++++.. +++| ...++..++  ++         +.++++++|||+.+..+| ++++||+++|
T Consensus       156 ~~~~~l~r~~~RL~~~~~~~~~~-~lgG-AvGt~a~~~--~~---------v~~~~a~~LGl~~~~~~~-~v~~RD~~~e  221 (442)
T PRK08470        156 IWYDEIKRHLKALEHTMEVISVG-KISG-AMGNFAHAP--LE---------LEELVCEELGLKPAPVSN-QVIQRDRYAR  221 (442)
T ss_pred             HHHHHHHHHHHHHHHHHHHhhhh-cCcc-hhcccccCC--hH---------HHHHHHHHcCCCCCCCCC-CccCcHHHHH
Confidence            68999999999999999998742 4423 222333333  22         246999999999776555 7899999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHh--ccccccccccCCCCCccCCCCCCchHHHHHHHHHHHHHHHHHHHHHhhcccccc
Q psy14319         82 VTGVLSSLGASIHKLATDLRLLAH--MKEIEEPFESTQIGSSAMAYKRNPMRSERLCSLARFLMSLHQNSLATASTQWME  159 (486)
Q Consensus        82 ~~~~la~la~~LsRlA~DL~l~ss--~~el~e~~~~~~~GSSiMPqKrNP~~~E~ir~~a~~v~g~~~~~l~~~~~~~~e  159 (486)
                      ++++++.++++|+|||+||++|++  |+|+.|+|+++++|||||||||||+.+|+++++++.+.|.... ++.+++.+||
T Consensus       222 ~~~~La~~a~~L~ria~Di~~l~~~E~~ev~e~~~~g~~GSS~MPhKrNPv~~E~i~~~a~~~~~~~~~-~~~~~~~~~e  300 (442)
T PRK08470        222 LASALALLASSCEKIAVAIRHLQRTEVYEAEEYFSKGQKGSSAMPHKRNPVLSENITGLCRVIRSFATP-ALENVALWHE  300 (442)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhccccceecccCCCCCCCcCCCCCCcCcHHHHHHHHHHHHHHHHHHH-HHHhchHhhc
Confidence            999999999999999999999995  9999999988999999999999999999999999999999764 5677899999


Q ss_pred             CCCchhhHhhhchHHHHHHHHHHHHHHHHhhhccccCHHhhhhhhcCCCCCCcccccccccCCCCCCCcHHHHHHHHHHH
Q psy14319        160 RTLDDSANRRLTLSESFLTTDCLLITLQNVLEGLVVYPKETYSIRIIPDNRLSSHHTTKRSGRPGDGDKVKALDRLVTKK  239 (486)
Q Consensus       160 rDl~~~~~~~~~l~~a~~~~~~~l~~~~~vl~~l~vn~erm~~~~~~~~~~g~~~~~~~~~~~~~~g~~~~~i~~~lA~~  239 (486)
                      ||+++|..+|..+|+++..+..++..+..++++|+||++||++..  ....|.              ..++.+...+++.
T Consensus       301 RD~~~~~~e~~~l~~~~~~~~~~l~~~~~~l~~l~v~~~rm~~nl--~~~~g~--------------~~ae~l~~~L~~~  364 (442)
T PRK08470        301 RDISHSSVERFILPDAFITTDFMLHRLNNVIENLVVYPENMMKNL--NLTGGL--------------VFSQRVLLELPKK  364 (442)
T ss_pred             cCCchhHHHhhhHHHHHHHHHHHHHHHHHHHccCEECHHHHHHHH--HhccCh--------------HHHHHHHHHHHHc
Confidence            999999999999999999999999999999999999999999832  111122              2357777777664


Q ss_pred             -cCCCCCc
Q psy14319        240 -AGFTSSH  246 (486)
Q Consensus       240 -LGf~~a~  246 (486)
                       +||+.+|
T Consensus       365 G~~~~~Ah  372 (442)
T PRK08470        365 GVSREDAY  372 (442)
T ss_pred             CCCHHHHH
Confidence             7777764

>TIGR00928 purB adenylosuccinate lyase

Probab=100.00  E-value=1e-33  Score=300.28  Aligned_cols=218  Identities=25%  Similarity=0.336  Sum_probs=182.9

Q ss_pred             hhhhhHhccHHHHHHHHHHHhhhcCCCceeecccCcccccchhhhhhhhhhhhHHHHHHcCCCCCCCcccccccccHHHH
Q psy14319          2 KFYKYVLGDGDKVKALDRLVTKKAGFNSSHIITGQTYSRKVDVIVTGVLSSLGASIHKKAGFNSSHIITGQTYSRKVDVI   81 (486)
Q Consensus         2 ~~~~~~~~d~~r~~~~~~~~~~~~g~~~~~a~~g~~~~r~~d~~~~Gt~a~~~~~~a~~LGf~~~~~~~~av~~RD~~~e   81 (486)
                      +|.+.|.||.+|+.++.++++.. +++|  + .|+.++  +|+.    +.....+++++|||+.|.++| ++++||++++
T Consensus       159 ~~~~~l~r~~~rL~~~~~~~~~~-~lgG--a-~Gt~~~--~~~~----~~~~~~~~a~~LGl~~~~~~~-~~~~rD~~~e  227 (435)
T TIGR00928       159 LWADEMKRQLERLLQAKERIKVG-GISG--A-VGTHAA--AYPL----VEEVEERVTEFLGLKPVPIST-QIEPRDRHAE  227 (435)
T ss_pred             HHHHHHHHHHHHHHHHHHHhHhh-cccc--h-hhhHhh--cccc----HHHHHHHHHHhcCCCCCCCCc-cccccHHHHH
Confidence            68999999999999999999753 5534  3 666664  5531    023346899999999998777 8999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHh--ccccccccccCCCCCccCCCCCCchHHHHHHHHHHHHHHHHHHHHHhhcccccc
Q psy14319         82 VTGVLSSLGASIHKLATDLRLLAH--MKEIEEPFESTQIGSSAMAYKRNPMRSERLCSLARFLMSLHQNSLATASTQWME  159 (486)
Q Consensus        82 ~~~~la~la~~LsRlA~DL~l~ss--~~el~e~~~~~~~GSSiMPqKrNP~~~E~ir~~a~~v~g~~~~~l~~~~~~~~e  159 (486)
                      ++++++.++++|+|||+||++|++  |+|+.+|+..+++|||||||||||+.+|+++++|+++.|+.+.+ ...++++||
T Consensus       228 ~~~~l~~la~~L~ria~Dl~l~s~~~~~el~~~~~~~~~GSS~MP~K~NP~~~E~i~~~a~~~~g~~~~~-~~~~~~~~e  306 (435)
T TIGR00928       228 LLDALALLATTLEKFAVDIRLLQRTEHFEVEEPFGKGQVGSSAMPHKRNPIDFENVCGLARVIRSVLSPA-LENVPLWHE  306 (435)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhccccceecccCCCCCCcCCCCcCcCcHHHHHHHHHHHHHHHHHHHH-HHHhhHHhc
Confidence            999999999999999999999996  99999999778899999999999999999999999999999864 456799999


Q ss_pred             CCCchhhHhhhchHHHHHHHHHHHHHHHHhhhccccCHHhhhhhhcCCCCCCcccccccccCCCCCCCcHHHHHHHHHH-
Q psy14319        160 RTLDDSANRRLTLSESFLTTDCLLITLQNVLEGLVVYPKETYSIRIIPDNRLSSHHTTKRSGRPGDGDKVKALDRLVTK-  238 (486)
Q Consensus       160 rDl~~~~~~~~~l~~a~~~~~~~l~~~~~vl~~l~vn~erm~~~~~~~~~~g~~~~~~~~~~~~~~g~~~~~i~~~lA~-  238 (486)
                      ||+++|..+|..+++++..+..++..+..++++|+||++||++....++  |.              -..+.+...+++ 
T Consensus       307 rd~~~~~~~~~~l~~~~~~~~~~l~~~~~~l~~l~v~~~rm~~~l~~~~--~~--------------~~a~~la~~L~~~  370 (435)
T TIGR00928       307 RDLTDSSVERIILPDSFILADIMLKTTLKVVKKLVVNPENILRNLELTL--GL--------------IASERVLIALVER  370 (435)
T ss_pred             cCChHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCEECHHHHHHHHHhcc--Ch--------------HhHHHHHHHHHHh
Confidence            9999999999999999999999999999999999999999998321111  11              134666677665 


Q ss_pred             HcCCCCCcc
Q psy14319        239 KAGFTSSHI  247 (486)
Q Consensus       239 ~LGf~~a~~  247 (486)
                      .+||+.+|.
T Consensus       371 g~g~~~Ah~  379 (435)
T TIGR00928       371 GMGREEAYE  379 (435)
T ss_pred             CCChhhHHH
Confidence            588887653

This family consists of adenylosuccinate lyase, the enzyme that catalyzes step 8 in the purine biosynthesis pathway for de novo synthesis of IMP and also the final reaction in the two-step sequence from IMP to AMP.

>PRK00855 argininosuccinate lyase; Provisional

Probab=100.00  E-value=1.6e-33  Score=300.59  Aligned_cols=193  Identities=19%  Similarity=0.186  Sum_probs=167.5

Q ss_pred             CCCcHHHHHHHHHHHcCCCCCc-cccccccCccHHHHHHHHHHHHHHHHHHHHHHHHHHhh--hhhccccccCCCCcCcC
Q psy14319        225 DGDKVKALDRLVTKKAGFTSSH-IITGQTYSRKVDVIVTGVLSSLGASIHKLATDLRLLAH--MKEIEEPFESTQIGSSA  301 (486)
Q Consensus       225 ~g~~~~~i~~~lA~~LGf~~a~-~~~~~~~~rd~~~e~~~~l~~~~~~l~rla~Dl~l~ss--~~el~~~~~~~~~GSSi  301 (486)
                      .|+..+.+++++++.|||..+. |..+|+++||++++++++++.++++|+|||+||++|++  |||+.+| +..++||||
T Consensus       203 ~gt~~~~~r~~~a~~LG~~~~~~n~~~a~~~rd~~~e~~~~l~~la~~L~ria~Dl~l~ss~e~gei~~p-~~~~~gSSi  281 (459)
T PRK00855        203 AGTTFPIDRERTAELLGFDGVTENSLDAVSDRDFALEFLSAASLLMVHLSRLAEELILWSSQEFGFVELP-DAFSTGSSI  281 (459)
T ss_pred             cCCCCCcCHHHHHHHcCCCCCCCCHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcCCCeEeCC-CCCCCCcCC
Confidence            3445568889999999999765 56778999999999999999999999999999999999  8999998 456799999


Q ss_pred             CCCCCCchHHHHHHHHHHHHHHHhHHHHHHhh--hhHhhhcccccCCCCCCccccchhhhhhccCCcchhhhhhccCCCC
Q psy14319        302 MAYKRNPMRSERLCSLARFLMSLHQNSLATAS--TQWMERTLDDSANRFPTKSVFSCVTQVKQHGKENDLVDRIRADPYF  379 (486)
Q Consensus       302 MPqKrNP~~~E~~~~~a~~~~g~~~~~~~~~~--~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~g~~~d~~~~~~~~~~~  379 (486)
                      |||||||+.+|+++++|+++.|+..+++....  ..+++|                            |+          
T Consensus       282 MPqK~NP~~~E~i~~~a~~~~g~~~~~~~~~~~~~~~~~r----------------------------D~----------  323 (459)
T PRK00855        282 MPQKKNPDVAELIRGKTGRVYGNLTGLLTVMKGLPLAYNR----------------------------DL----------  323 (459)
T ss_pred             CCCCCCCHHHHHHHHHHHHHHhhHHHHHHHhcCchHHhhh----------------------------hh----------
Confidence            99999999999999999999999988875321  122333                            32          


Q ss_pred             ccccccCCCCCCCccccCCchhHhhhhhhcccchHHHHHHHHHHHHHHHhchhCCeeCHHHHHHHHhccCChhHHHHHHH
Q psy14319        380 APILNQMPTLLDPKSFYGRAPEQQRLSAKGIHTLSESFLTTDCLLITLQNVLEGLVVYPKVIQRHIDQELPFMATENIIM  459 (486)
Q Consensus       380 ~~~~~~~~~~~~p~~~~~~~~~q~~~~~~~~~~l~~~~~~~~~~l~~~~~~l~~l~v~~~~m~~~l~~~~~~~~a~~~~~  459 (486)
                                                 ++.|..+++++..+..++..+..++++++||+++|+++++  .++++++++++
T Consensus       324 ---------------------------~~~~~~l~~~~~~~~~al~~~~~~l~~l~v~~~~m~~~l~--~~~~~at~la~  374 (459)
T PRK00855        324 ---------------------------QEDKEPLFDAVDTLKLSLEAMAGMLETLTVNKERMREAAG--KGFSTATDLAD  374 (459)
T ss_pred             ---------------------------hhhHHHHHHHHHHHHHHHHHHHHHHccCEECHHHHHHHHH--cchhHHHHHHH
Confidence                                       1135678999999999999999999999999999999997  46889999999


Q ss_pred             HHHHcCCChHHHHHHHHHHHHHhhhc
Q psy14319        460 AMVKAGGDRQVCHEKIRVLSHQAGAQ  485 (486)
Q Consensus       460 ~L~~~g~~fr~Ah~~v~~~~~~a~~~  485 (486)
                      .||++|+|||+||++|+++++++.++
T Consensus       375 ~Lv~~gi~~r~Ah~~v~~~~~~a~~~  400 (459)
T PRK00855        375 YLVRKGVPFREAHEIVGKAVREAEER  400 (459)
T ss_pred             HHHHcCCCHHHHHHHHHHHHHHHHHh
Confidence            99999999999999999999998653

>PRK02186 argininosuccinate lyase; Provisional

Probab=100.00  E-value=8e-34  Score=324.60  Aligned_cols=214  Identities=15%  Similarity=0.162  Sum_probs=187.8

Q ss_pred             ChhhhhHhccHHHHHHHHHHHhhh-cCCCceeecccCcccccchhhhhhhhhhhhHHHHHHcCCCCCCCcc-cccccccH
Q psy14319          1 MKFYKYVLGDGDKVKALDRLVTKK-AGFNSSHIITGQTYSRKVDVIVTGVLSSLGASIHKKAGFNSSHIIT-GQTYSRKV   78 (486)
Q Consensus         1 ~~~~~~~~~d~~r~~~~~~~~~~~-~g~~~~~a~~g~~~~r~~d~~~~Gt~a~~~~~~a~~LGf~~~~~~~-~av~~RD~   78 (486)
                      ++|+++|.||.+|+.++.++++.+ +|   +++++|++++  +|+          +++|++|||+.|..|| +++++||+
T Consensus       577 ~~~~~~l~r~~~rl~~~~~r~~~~plG---~aag~gt~~~--~~~----------~~~a~~LGf~~~~~n~~da~~~rd~  641 (887)
T PRK02186        577 LAVDGALARETHALFALFEHIDVCPLG---AGAGGGTTFP--IDP----------EFVARLLGFEQPAPNSLDAVASRDG  641 (887)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhCcCCcc---cccccCCCCC--CCH----------HHHHHHcCCCCCccCHHHHHcccHH
Confidence            379999999999999999999853 55   6888999996  774          6899999999987666 89999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHh--ccccccccccCCCCCccCCCCCCchHHHHHHHHHHHHHHHHHHHHHhhccc
Q psy14319         79 DVIVTGVLSSLGASIHKLATDLRLLAH--MKEIEEPFESTQIGSSAMAYKRNPMRSERLCSLARFLMSLHQNSLATASTQ  156 (486)
Q Consensus        79 ~~e~~~~la~la~~LsRlA~DL~l~ss--~~el~e~~~~~~~GSSiMPqKrNP~~~E~ir~~a~~v~g~~~~~l~~~~~~  156 (486)
                      ++|+++++++++++|+|||+||++|++  |+|+.+|+ ++++|||||||||||+++|++|++++++.|+..+++......
T Consensus       642 ~~e~~~~l~~~~~~l~ria~Dl~~~~~~e~g~i~~~~-~~~~gSSiMPqKrNP~~~E~ir~~~~~~~g~~~~~~~~~~~~  720 (887)
T PRK02186        642 VLHFLSAMAAISTVLSRLAQDLQLWTTREFALVSLPD-ALTGGSSMLPQKKNPFLLEFVKGRAGVVAGALASASAALGKT  720 (887)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCcEECCC-ccccccCCCCCCCCCcHHHHHHHHHHHHhhHHHHHHHHHccC
Confidence            999999999999999999999999996  99999998 678999999999999999999999999999998766566677


Q ss_pred             cccCCCchhhHhhhchHHHHHHHHHHHHHHHHhhhccccCHHhhhhhhcCCCCCCcccccccccCCCCCCCcHHHHHHHH
Q psy14319        157 WMERTLDDSANRRLTLSESFLTTDCLLITLQNVLEGLVVYPKETYSIRIIPDNRLSSHHTTKRSGRPGDGDKVKALDRLV  236 (486)
Q Consensus       157 ~~erDl~~~~~~~~~l~~a~~~~~~~l~~~~~vl~~l~vn~erm~~~~~~~~~~g~~~~~~~~~~~~~~g~~~~~i~~~l  236 (486)
                      ++++|...|+.+|..+++++..+..++..+..++++|+||++||++..                  ...+..++.+.+.+
T Consensus       721 ~~~~~~~~~~~~~~~l~~~~~~~~~~l~~~~~~l~~l~v~~~rm~~~~------------------~~~~~~at~la~~L  782 (887)
T PRK02186        721 PFSNSFEAGSPMNGPIAQACAAIEDAAAVLVLLIDGLEADQARMRAHL------------------EDGGVSATAVAESL  782 (887)
T ss_pred             CcccccchhhhhHHHHHHHHHHHHHHHHHHHHHHhhCEECHHHHHHHH------------------hcCcchHHHHHHHH
Confidence            888888878888999999999999999999999999999999999832                  11222568888887


Q ss_pred             HH--HcCCCCCccc
Q psy14319        237 TK--KAGFTSSHII  248 (486)
Q Consensus       237 A~--~LGf~~a~~~  248 (486)
                      ++  .+||+.+|.+
T Consensus       783 ~~~~g~~fr~Ah~~  796 (887)
T PRK02186        783 VVRRSISFRSAHTQ  796 (887)
T ss_pred             HHhCCCCHHHHHHH
Confidence            76  5888887543

>PRK08540 adenylosuccinate lyase; Reviewed

Probab=100.00  E-value=1.6e-33  Score=299.76  Aligned_cols=214  Identities=24%  Similarity=0.334  Sum_probs=179.4

Q ss_pred             hhhhhHhccHHHHHHHHHHHhhhcCCCc---ee-ecccCcccccchhhhhhhhhhhhHHHHHHcCCCCCCCccccccccc
Q psy14319          2 KFYKYVLGDGDKVKALDRLVTKKAGFNS---SH-IITGQTYSRKVDVIVTGVLSSLGASIHKKAGFNSSHIITGQTYSRK   77 (486)
Q Consensus         2 ~~~~~~~~d~~r~~~~~~~~~~~~g~~~---~~-a~~g~~~~r~~d~~~~Gt~a~~~~~~a~~LGf~~~~~~~~av~~RD   77 (486)
                      +|++.|.||.+|+.++.++++.. ++||   ++ ++.|+.+  +++           ++++++|||+.+..+| ++++||
T Consensus       165 ~~~~~l~r~~~rL~~~~~~~~~~-~lGgavGt~~a~~~~~~--~i~-----------~~~a~~LGl~~~~~~~-~~~~rd  229 (449)
T PRK08540        165 IWASEIQRHLERLEQLKPRVCVG-QMTGAVGTQAAFGEKGI--EIQ-----------KRVMEILGLKPVLISN-QVIQRD  229 (449)
T ss_pred             HHHHHHHHHHHHHHHHHHhhhec-cccccccchhhCCCccH--HHH-----------HHHHHHcCCCCCCCcC-CccccH
Confidence            68999999999999999999843 4434   11 2222222  244           5899999999987666 689999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHh--ccccccccccCCCCCccCCCCCCchHHHHHHHHHHHHHHHHHHHHHhhcc
Q psy14319         78 VDVIVTGVLSSLGASIHKLATDLRLLAH--MKEIEEPFESTQIGSSAMAYKRNPMRSERLCSLARFLMSLHQNSLATAST  155 (486)
Q Consensus        78 ~~~e~~~~la~la~~LsRlA~DL~l~ss--~~el~e~~~~~~~GSSiMPqKrNP~~~E~ir~~a~~v~g~~~~~l~~~~~  155 (486)
                      ++++++++++.++++|+|||+||++|++  |+||.++++++++|||||||||||+.+|+++++|+++.|.... ++.+++
T Consensus       230 ~~~e~~~~l~~~a~~l~kia~Dl~l~s~~e~gei~e~~~~~~~GSSiMP~K~NP~~~E~i~~~a~~~~g~~~~-~~~~~~  308 (449)
T PRK08540        230 RHAEFMMFLANIATTLDKIGLEIRNLQRTEIGEVEEEFGKKQVGSSTMPHKRNPITSEQICGLARVVRSNVEP-ALLNNP  308 (449)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhcccCCCCCCcCCCCCCcCcHHHHHHHHHHHHHHHHHHH-HHhcch
Confidence            9999999999999999999999999995  9999999888899999999999999999999999999999875 556789


Q ss_pred             ccccCCCchhhHhhhchHHHHHHHHHHHHHHHHhhhccccCHHhhhhhhcCCCCCCcccccccccCCCCCCCcHHHHHHH
Q psy14319        156 QWMERTLDDSANRRLTLSESFLTTDCLLITLQNVLEGLVVYPKETYSIRIIPDNRLSSHHTTKRSGRPGDGDKVKALDRL  235 (486)
Q Consensus       156 ~~~erDl~~~~~~~~~l~~a~~~~~~~l~~~~~vl~~l~vn~erm~~~~~~~~~~g~~~~~~~~~~~~~~g~~~~~i~~~  235 (486)
                      .+|+||+++|..+|..+++++..+..++..+..++++|+||++||++....  ..|.              ..++.+...
T Consensus       309 ~~~~rd~~~~~~e~~~l~~~~~~~~~~l~~~~~~l~~l~v~~~rm~~~l~~--~~~~--------------~~ae~la~~  372 (449)
T PRK08540        309 LWDERDLTNSSCERIIFPESCVLTDHILKLMIKVLEGLRFNPENIRRNLEL--TKGL--------------IMAEAVMIE  372 (449)
T ss_pred             hhhccCCchhHHHHHHHHHHHHHHHHHHHHHHHHHccCEECHHHHHHHHHH--hcCH--------------HHHHHHHHH
Confidence            999999999999999999999999999999999999999999999983211  1122              245777777


Q ss_pred             HHH-HcCCCCCcc
Q psy14319        236 VTK-KAGFTSSHI  247 (486)
Q Consensus       236 lA~-~LGf~~a~~  247 (486)
                      +.+ .+||+.+|.
T Consensus       373 L~~~glg~~~Ah~  385 (449)
T PRK08540        373 LAKRGMGRQEAHE  385 (449)
T ss_pred             HHHcCCCHHHHHH
Confidence            666 588887643

>TIGR00838 argH argininosuccinate lyase

Probab=100.00  E-value=3.5e-33  Score=297.65  Aligned_cols=190  Identities=18%  Similarity=0.163  Sum_probs=163.9

Q ss_pred             HHHHHHHHHHcCCCCCc-cccccccCccHHHHHHHHHHHHHHHHHHHHHHHHHHhh--hhhccccccCCCCcCcCCCCCC
Q psy14319        230 KALDRLVTKKAGFTSSH-IITGQTYSRKVDVIVTGVLSSLGASIHKLATDLRLLAH--MKEIEEPFESTQIGSSAMAYKR  306 (486)
Q Consensus       230 ~~i~~~lA~~LGf~~a~-~~~~~~~~rd~~~e~~~~l~~~~~~l~rla~Dl~l~ss--~~el~~~~~~~~~GSSiMPqKr  306 (486)
                      +.+++++++.|||+.+. |..+++++||++++++++++.++++|+|||+||++|++  ||||.+| +..++|||||||||
T Consensus       204 ~~~r~~~a~~LG~~~~~~n~~~a~~~rd~~~e~~~~l~~~a~~L~ria~Dl~l~ss~e~gei~lp-~~~~~GSSiMP~K~  282 (455)
T TIGR00838       204 PIDREYLAELLGFDAVTENSLDAVSDRDFILELLFVAALIMVHLSRFAEDLILWSTGEFGFVELP-DEFSSGSSIMPQKK  282 (455)
T ss_pred             CCCHHHHHHHcCCCCCcCCHHHHHhCcHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCeeeCC-CCCCCccCCCCCCc
Confidence            56678899999999865 45567999999999999999999999999999999999  9999987 45579999999999


Q ss_pred             CchHHHHHHHHHHHHHHHhHHHHHHhhhhHhhhcccccCCCCCCccccchhhhhhccCCcchhhhhhccCCCCccccccC
Q psy14319        307 NPMRSERLCSLARFLMSLHQNSLATASTQWMERTLDDSANRFPTKSVFSCVTQVKQHGKENDLVDRIRADPYFAPILNQM  386 (486)
Q Consensus       307 NP~~~E~~~~~a~~~~g~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~g~~~d~~~~~~~~~~~~~~~~~~  386 (486)
                      ||+.+|+++++++++.|...+++......++                          ++++|+                 
T Consensus       283 NP~~~E~i~~~a~~~~g~~~~~~~~~~~~~~--------------------------~~~rd~-----------------  319 (455)
T TIGR00838       283 NPDVAELIRGKTGRVQGNLTGMLMTLKALPL--------------------------AYNRDL-----------------  319 (455)
T ss_pred             CChHHHHHHHHHHHHhhhHHHHHHHHhcCCh--------------------------Hhhhhh-----------------
Confidence            9999999999999999999988865321110                          122222                 


Q ss_pred             CCCCCCccccCCchhHhhhhhhcccchHHHHHHHHHHHHHHHhchhCCeeCHHHHHHHHhccCChhHHHHHHHHHHHcCC
Q psy14319        387 PTLLDPKSFYGRAPEQQRLSAKGIHTLSESFLTTDCLLITLQNVLEGLVVYPKVIQRHIDQELPFMATENIIMAMVKAGG  466 (486)
Q Consensus       387 ~~~~~p~~~~~~~~~q~~~~~~~~~~l~~~~~~~~~~l~~~~~~l~~l~v~~~~m~~~l~~~~~~~~a~~~~~~L~~~g~  466 (486)
                                     |     +.|..+++++..+..++..+..++++|+||+++|+++++.  +++++|.+++.||++|+
T Consensus       320 ---------------~-----~~~~~l~~~~~~~~~al~~~~~~i~~l~v~~~rm~~~~~~--~~~~at~la~~Lv~~g~  377 (455)
T TIGR00838       320 ---------------Q-----EDKEPLFDALKTVELSLEMATGMLDTITVNKERMEEAASA--GFSNATELADYLVRKGV  377 (455)
T ss_pred             ---------------H-----hhHHHHHHHHHHHHHHHHHHHHHHccCEECHHHHHHHHHc--CccHHHHHHHHHHHcCC
Confidence                           1     1356899999999999999999999999999999999764  57899999999999999


Q ss_pred             ChHHHHHHHHHHHHHhhhc
Q psy14319        467 DRQVCHEKIRVLSHQAGAQ  485 (486)
Q Consensus       467 ~fr~Ah~~v~~~~~~a~~~  485 (486)
                      |||+||++|+++++++.++
T Consensus       378 ~~r~Ah~~v~~~~~~a~~~  396 (455)
T TIGR00838       378 PFREAHHIVGELVATAIER  396 (455)
T ss_pred             CHHHHHHHHHHHHHHHHHc
Confidence            9999999999999998764

This model describes argininosuccinate lyase, but may include examples of avian delta crystallins, in which argininosuccinate lyase activity may or may not be present and the biological role is to provide the optically clear cellular protein of the eye lens.

>cd03302 Adenylsuccinate_lyase_2 Adenylsuccinate lyase (ASL)_subgroup 2

Probab=100.00  E-value=3e-33  Score=296.41  Aligned_cols=223  Identities=48%  Similarity=0.637  Sum_probs=184.5

Q ss_pred             hhhhhHhccHHHHHHHHHHHhhhcCCC---ceeecccCcccccchhhhhhhhhhhhHHHHHHcCCCCCCCcccccccccH
Q psy14319          2 KFYKYVLGDGDKVKALDRLVTKKAGFN---SSHIITGQTYSRKVDVIVTGVLSSLGASIHKKAGFNSSHIITGQTYSRKV   78 (486)
Q Consensus         2 ~~~~~~~~d~~r~~~~~~~~~~~~g~~---~~~a~~g~~~~r~~d~~~~Gt~a~~~~~~a~~LGf~~~~~~~~av~~RD~   78 (486)
                      +|++.|.||.+|+.++.+++.. .|++   |+++..|++++  +|+.   ....+.++++++|||..+.++++++.+||+
T Consensus       158 ~~~~~L~r~~~RL~~~~~~~~~-~~~~GavGt~a~~~~~~~--~dr~---~~~~v~~~~a~~LGl~~~~~~~~~v~~rD~  231 (436)
T cd03302         158 LWIQDLLMDLRNLERLRDDLRF-RGVKGTTGTQASFLDLFE--GDHD---KVEALDELVTKKAGFKKVYPVTGQTYSRKV  231 (436)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHh-hcCcChhhhhHHHHhcCC--chHH---HHHHHHHHHHHHcCCCCCCCchhhhhccHH
Confidence            6899999999999999998853 2332   24555566775  5531   001234689999999998444458999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHhccccccccccCCCCCccCCCCCCchHHHHHHHHHHHHHHHHHHHHHhhccccc
Q psy14319         79 DVIVTGVLSSLGASIHKLATDLRLLAHMKEIEEPFESTQIGSSAMAYKRNPMRSERLCSLARFLMSLHQNSLATASTQWM  158 (486)
Q Consensus        79 ~~e~~~~la~la~~LsRlA~DL~l~ss~~el~e~~~~~~~GSSiMPqKrNP~~~E~ir~~a~~v~g~~~~~l~~~~~~~~  158 (486)
                      ++|++++++.++++|+|||+||++|++++||.+|+..+++|||||||||||+.+|+++++|+.+.|....++..+..+++
T Consensus       232 ~~e~~~~la~~a~~L~riA~Dl~l~~s~~el~e~~~~g~~GSS~MPhKrNPv~~E~i~~~a~~~~g~~~~~~~~~~~~~~  311 (436)
T cd03302         232 DIDVLNALSSLGATAHKIATDIRLLANLKEVEEPFEKGQIGSSAMPYKRNPMRSERCCSLARHLMNLASNAAQTASTQWF  311 (436)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhhCceecccccCCCCCcccCCCccCcHHHHHHHHHHHHHHhhHHHHHHHhhcccc
Confidence            99999999999999999999999999999999999778999999999999999999999999999999986657788999


Q ss_pred             cCCCchhhHhhhchHHHHHHHHHHHHHHHHhhhccccCHHhhhhhhcCCCCCCcccccccccCCCCCCCcHHHHHHHHHH
Q psy14319        159 ERTLDDSANRRLTLSESFLTTDCLLITLQNVLEGLVVYPKETYSIRIIPDNRLSSHHTTKRSGRPGDGDKVKALDRLVTK  238 (486)
Q Consensus       159 erDl~~~~~~~~~l~~a~~~~~~~l~~~~~vl~~l~vn~erm~~~~~~~~~~g~~~~~~~~~~~~~~g~~~~~i~~~lA~  238 (486)
                      |||+..|..+|..+++++..+..++..+..++++|+||++||++.....  .|.              ...+.+...+++
T Consensus       312 Erd~~~~~~~~~~l~~~~~~~~~~l~~~~~~l~~l~v~~~rm~~~l~~~--~g~--------------~~se~~~~~L~~  375 (436)
T cd03302         312 ERTLDDSANRRIAIPEAFLAADAILITLQNISEGLVVYPKVIERHIRQE--LPF--------------MATENIIMAAVK  375 (436)
T ss_pred             ccCCchhHHHHHHHHHHHHHHHHHHHHHHHHHcCCEECHHHHHHHHHhc--cCh--------------HHHHHHHHHHHH
Confidence            9999999999999999999999999999999999999999999843111  111              234567777766


Q ss_pred             H-cCCCCCc
Q psy14319        239 K-AGFTSSH  246 (486)
Q Consensus       239 ~-LGf~~a~  246 (486)
                      . +||+.+|
T Consensus       376 ~g~~~~~Ah  384 (436)
T cd03302         376 AGGDRQDAH  384 (436)
T ss_pred             cCCCHHHHH
Confidence            4 7777764

This subgroup contains mainly eukaryotic proteins similar to ASL, a member of the Lyase class I family. Members of this family for the most part catalyze similar beta-elimination reactions in which a C-N or C-O bond is cleaved with the release of fumarate as one of the products. These proteins are active as tetramers. The four active sites of the homotetrameric enzyme are each formed by residues from three different subunits. ASL catalyzes two steps in the de novo purine biosynthesis: the conversion of 5-aminoimidazole-(N-succinylocarboxamide) ribotide (SAICAR) into 5-aminoimidazole-4-carboxamide ribotide (AICAR) and, the conversion of adenylsuccinate (SAMP) into adenosine monophosphate (AMP). ASL deficiency has been linked to several pathologies including psychomotor retardation with autistic features, epilepsy and muscle wasting.

>PRK02186 argininosuccinate lyase; Provisional

Probab=100.00  E-value=3.5e-33  Score=319.39  Aligned_cols=196  Identities=15%  Similarity=0.158  Sum_probs=170.6

Q ss_pred             CCCcHHHHHHHHHHHcCCCCCc-cccccccCccHHHHHHHHHHHHHHHHHHHHHHHHHHhh--hhhccccccCCCCcCcC
Q psy14319        225 DGDKVKALDRLVTKKAGFTSSH-IITGQTYSRKVDVIVTGVLSSLGASIHKLATDLRLLAH--MKEIEEPFESTQIGSSA  301 (486)
Q Consensus       225 ~g~~~~~i~~~lA~~LGf~~a~-~~~~~~~~rd~~~e~~~~l~~~~~~l~rla~Dl~l~ss--~~el~~~~~~~~~GSSi  301 (486)
                      .|+..+..++++++.|||..+. |..+++++||+++|++++++.++.+|+|||+||++|++  |||+.+|+ ++++||||
T Consensus       608 ~gt~~~~~~~~~a~~LGf~~~~~n~~da~~~rd~~~e~~~~l~~~~~~l~ria~Dl~~~~~~e~g~i~~~~-~~~~gSSi  686 (887)
T PRK02186        608 GGTTFPIDPEFVARLLGFEQPAPNSLDAVASRDGVLHFLSAMAAISTVLSRLAQDLQLWTTREFALVSLPD-ALTGGSSM  686 (887)
T ss_pred             cCCCCCCCHHHHHHHcCCCCCccCHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCcEECCC-ccccccCC
Confidence            3444455678899999999765 55678899999999999999999999999999999999  99999986 67899999


Q ss_pred             CCCCCCchHHHHHHHHHHHHHHHhHHHHHHhhhhHhhhcccccCCCCCCccccchhhhhhccCCcchhhhhhccCCCCcc
Q psy14319        302 MAYKRNPMRSERLCSLARFLMSLHQNSLATASTQWMERTLDDSANRFPTKSVFSCVTQVKQHGKENDLVDRIRADPYFAP  381 (486)
Q Consensus       302 MPqKrNP~~~E~~~~~a~~~~g~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~g~~~d~~~~~~~~~~~~~  381 (486)
                      |||||||+.+|++|++++++.|++++++......+++++...                                      
T Consensus       687 MPqKrNP~~~E~ir~~~~~~~g~~~~~~~~~~~~~~~~~~~~--------------------------------------  728 (887)
T PRK02186        687 LPQKKNPFLLEFVKGRAGVVAGALASASAALGKTPFSNSFEA--------------------------------------  728 (887)
T ss_pred             CCCCCCCcHHHHHHHHHHHHhhHHHHHHHHHccCCcccccch--------------------------------------
Confidence            999999999999999999999999988866555555543211                                      


Q ss_pred             ccccCCCCCCCccccCCchhHhhhhhhcccchHHHHHHHHHHHHHHHhchhCCeeCHHHHHHHHhccCChhHHHHHHHHH
Q psy14319        382 ILNQMPTLLDPKSFYGRAPEQQRLSAKGIHTLSESFLTTDCLLITLQNVLEGLVVYPKVIQRHIDQELPFMATENIIMAM  461 (486)
Q Consensus       382 ~~~~~~~~~~p~~~~~~~~~q~~~~~~~~~~l~~~~~~~~~~l~~~~~~l~~l~v~~~~m~~~l~~~~~~~~a~~~~~~L  461 (486)
                                         +     +++|..+++++.++..++..+..++++|+||++||+++++.+.+  +||++|++|
T Consensus       729 -------------------~-----~~~~~~l~~~~~~~~~~l~~~~~~l~~l~v~~~rm~~~~~~~~~--~at~la~~L  782 (887)
T PRK02186        729 -------------------G-----SPMNGPIAQACAAIEDAAAVLVLLIDGLEADQARMRAHLEDGGV--SATAVAESL  782 (887)
T ss_pred             -------------------h-----hhhHHHHHHHHHHHHHHHHHHHHHHhhCEECHHHHHHHHhcCcc--hHHHHHHHH
Confidence                               1     12467899999999999999999999999999999999987654  999999999


Q ss_pred             HHc-CCChHHHHHHHHHHHHHhhhc
Q psy14319        462 VKA-GGDRQVCHEKIRVLSHQAGAQ  485 (486)
Q Consensus       462 ~~~-g~~fr~Ah~~v~~~~~~a~~~  485 (486)
                      |++ |+|||+||++|+++++.|.++
T Consensus       783 ~~~~g~~fr~Ah~~v~~~v~~~~~~  807 (887)
T PRK02186        783 VVRRSISFRSAHTQVGQAIRQSLDQ  807 (887)
T ss_pred             HHhCCCCHHHHHHHHHHHHHHHHhc
Confidence            985 999999999999999998765

>cd01597 pCLME prokaryotic 3-carboxy-cis,cis-muconate cycloisomerase (CMLE)_like

Probab=100.00  E-value=7.2e-33  Score=294.08  Aligned_cols=217  Identities=23%  Similarity=0.213  Sum_probs=181.7

Q ss_pred             hhhhhHhccHHHHHHHHHHHhhhcCCCceeecccCcccccchhhhhhhhhhhhHHHHHHcCCCCCCCcccccccccHHHH
Q psy14319          2 KFYKYVLGDGDKVKALDRLVTKKAGFNSSHIITGQTYSRKVDVIVTGVLSSLGASIHKKAGFNSSHIITGQTYSRKVDVI   81 (486)
Q Consensus         2 ~~~~~~~~d~~r~~~~~~~~~~~~g~~~~~a~~g~~~~r~~d~~~~Gt~a~~~~~~a~~LGf~~~~~~~~av~~RD~~~e   81 (486)
                      +|++.|.||.+|+.++.++++.+ ++|| ++.+|++++  +|.      ....++++++|||..+..+|  +++||++++
T Consensus       161 ~~~~~l~r~~~rL~~~~~~~~~~-~lGg-a~Gtg~~~~--~~~------~~~~~~~a~~LGf~~~~~~~--~~~rd~~~e  228 (437)
T cd01597         161 VWLSELLRHRERLDELRPRVLVV-QFGG-AAGTLASLG--DQG------LAVQEALAAELGLGVPAIPW--HTARDRIAE  228 (437)
T ss_pred             HHHHHHHHHHHHHHHHHHhhhhh-cccc-ccccccccC--CcH------HHHHHHHHHHcCCCCCCCcc--ccCcHHHHH
Confidence            68999999999999999999843 4434 777888886  331      12256999999999987655  579999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHh--ccccccccccCCCCCccCCCCCCchHHHHHHHHHHHHHHHHHHHHHhhcccccc
Q psy14319         82 VTGVLSSLGASIHKLATDLRLLAH--MKEIEEPFESTQIGSSAMAYKRNPMRSERLCSLARFLMSLHQNSLATASTQWME  159 (486)
Q Consensus        82 ~~~~la~la~~LsRlA~DL~l~ss--~~el~e~~~~~~~GSSiMPqKrNP~~~E~ir~~a~~v~g~~~~~l~~~~~~~~e  159 (486)
                      ++++++.++++|+|||+||++|++  |+||.+|+.++++|||||||||||+.+|++|++|+++.|..+. ++..+.++||
T Consensus       229 ~~~~l~~~a~~l~rla~Dl~l~s~~e~gel~~~~~~~~~GSSiMPqK~NP~~~E~i~~~a~~~~g~~~~-~~~~~~~~~e  307 (437)
T cd01597         229 LASFLALLTGTLGKIARDVYLLMQTEIGEVAEPFAKGRGGSSTMPHKRNPVGCELIVALARRVPGLAAL-LLDAMVQEHE  307 (437)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhccccceeecccCCCCCCCCCCCCCcCcHHHHHHHHHHHHHHHHHHH-HHHhchhhcc
Confidence            999999999999999999999996  9999999866899999999999999999999999999999775 5556779999


Q ss_pred             CCCchhhHhhhchHHHHHHHHHHHHHHHHhhhccccCHHhhhhhhcCCCCCCcccccccccCCCCCCCcHHHHHHHHHHH
Q psy14319        160 RTLDDSANRRLTLSESFLTTDCLLITLQNVLEGLVVYPKETYSIRIIPDNRLSSHHTTKRSGRPGDGDKVKALDRLVTKK  239 (486)
Q Consensus       160 rDl~~~~~~~~~l~~a~~~~~~~l~~~~~vl~~l~vn~erm~~~~~~~~~~g~~~~~~~~~~~~~~g~~~~~i~~~lA~~  239 (486)
                      ||+..|..+|..+++++..+..++..+..++++++||++||++......  |+              ..++.+...+++.
T Consensus       308 rd~~~~~~~~~~l~~~~~~~~~~l~~~~~~l~~l~v~~~rm~~~~~~~~--~~--------------~~ae~l~~~l~~~  371 (437)
T cd01597         308 RDAGAWHAEWIALPEIFLLASGALEQAEFLLSGLEVNEDRMRANLDLTG--GL--------------ILSEAVMMALAPK  371 (437)
T ss_pred             cCCchhHHHHHHHHHHHHHHHHHHHHHHHHHcCCEECHHHHHHHHHhcc--Ch--------------HHHHHHHHHHHHh
Confidence            9999999999999999999999999999999999999999998321111  11              1245566666667


Q ss_pred             cCCCCCcc
Q psy14319        240 AGFTSSHI  247 (486)
Q Consensus       240 LGf~~a~~  247 (486)
                      +||+.+|.
T Consensus       372 i~~~~Ah~  379 (437)
T cd01597         372 LGRQEAHD  379 (437)
T ss_pred             cCHHHHHH
Confidence            88887653

This subgroup contains pCLME and related proteins, and belongs to the Lyase class I family. Members of this family for the most part catalyze similar beta-elimination reactions in which a C-N or C-O bond is cleaved with the release of fumarate as one of the products. These proteins are active as tetramers. The four active sites of the homotetrameric enzyme are each formed by residues from three different subunits. CMLE catalyzes the cyclization of 3-carboxy-cis,cis-muconate (3CM) to 4-carboxy-muconolactone in the beta-ketoadipate pathway. This pathway is responsible for the catabolism of a variety of aromatic compounds into intermediates of the citric cycle in prokaryotic and eukaryotic micro-organisms.

>cd01359 Argininosuccinate_lyase Argininosuccinate lyase (argininosuccinase, ASAL)

Probab=100.00  E-value=1.6e-32  Score=291.39  Aligned_cols=195  Identities=20%  Similarity=0.192  Sum_probs=164.9

Q ss_pred             CCCcHHHHHHHHHHHcCCCCCc-cccccccCccHHHHHHHHHHHHHHHHHHHHHHHHHHhh--hhhccccccCCCCcCcC
Q psy14319        225 DGDKVKALDRLVTKKAGFTSSH-IITGQTYSRKVDVIVTGVLSSLGASIHKLATDLRLLAH--MKEIEEPFESTQIGSSA  301 (486)
Q Consensus       225 ~g~~~~~i~~~lA~~LGf~~a~-~~~~~~~~rd~~~e~~~~l~~~~~~l~rla~Dl~l~ss--~~el~~~~~~~~~GSSi  301 (486)
                      .|+..+.+++++++.|||..+. |...++++||++++++++++.++++++|||+|+++|++  ||||.+| +..++||||
T Consensus       179 ~gt~~~~~~~~~a~~LG~~~~~~~~~~a~~~rd~~~e~~~~l~~~a~~l~ria~Dl~l~~~~e~gev~lp-e~~~~GSS~  257 (435)
T cd01359         179 AGTTFPIDRERTAELLGFDGPTENSLDAVSDRDFVLEFLSAAALLMVHLSRLAEDLILWSTQEFGFVELP-DAYSTGSSI  257 (435)
T ss_pred             cCCCCCCCHHHHHHHcCCCCCccCHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCeeeCC-CCCCCcccc
Confidence            3444567889999999998754 33355689999999999999999999999999999999  9999865 344599999


Q ss_pred             CCCCCCchHHHHHHHHHHHHHHHhHHHHHHhhhhHhhhcccccCCCCCCccccchhhhhhccCCcchhhhhhccCCCCcc
Q psy14319        302 MAYKRNPMRSERLCSLARFLMSLHQNSLATASTQWMERTLDDSANRFPTKSVFSCVTQVKQHGKENDLVDRIRADPYFAP  381 (486)
Q Consensus       302 MPqKrNP~~~E~~~~~a~~~~g~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~g~~~d~~~~~~~~~~~~~  381 (486)
                      |||||||+.+|+++++++.+.|...++......      +.                    .++++|+            
T Consensus       258 MP~KrNP~~~E~i~~~a~~~~g~~~~~~~~~~~------~~--------------------~~~~~d~------------  299 (435)
T cd01359         258 MPQKKNPDVLELIRGKAGRVIGALAGLLTTLKG------LP--------------------LAYNKDL------------  299 (435)
T ss_pred             CCCCCCCcHHHHHHHHHHHHhhHHhHHHHHhcC------CC--------------------CccchhH------------
Confidence            999999999999999999999999888665311      00                    1222332            


Q ss_pred             ccccCCCCCCCccccCCchhHhhhhhhcccchHHHHHHHHHHHHHHHhchhCCeeCHHHHHHHHhccCChhHHHHHHHHH
Q psy14319        382 ILNQMPTLLDPKSFYGRAPEQQRLSAKGIHTLSESFLTTDCLLITLQNVLEGLVVYPKVIQRHIDQELPFMATENIIMAM  461 (486)
Q Consensus       382 ~~~~~~~~~~p~~~~~~~~~q~~~~~~~~~~l~~~~~~~~~~l~~~~~~l~~l~v~~~~m~~~l~~~~~~~~a~~~~~~L  461 (486)
                                               ..+|..+++++..+..++..+..++++|+||+++|+++++  .+++++|++++.|
T Consensus       300 -------------------------~~~~~~l~~~~~~~~~al~~~~~~l~~l~v~~~~m~~~l~--~~~~~a~~l~~~l  352 (435)
T cd01359         300 -------------------------QEDKEPLFDAVDTLIASLRLLTGVISTLTVNPERMREAAE--AGFSTATDLADYL  352 (435)
T ss_pred             -------------------------HHhhHHHHHHHHHHHHHHHHHHHHHhhCEECHHHHHHHHh--cCccHHHHHHHHH
Confidence                                     1246789999999999999999999999999999999997  5688999999999


Q ss_pred             HH-cCCChHHHHHHHHHHHHHhhhc
Q psy14319        462 VK-AGGDRQVCHEKIRVLSHQAGAQ  485 (486)
Q Consensus       462 ~~-~g~~fr~Ah~~v~~~~~~a~~~  485 (486)
                      ++ +|+|||+||++|+++++++.++
T Consensus       353 ~~~~g~~~r~Ah~~v~~~~~~a~~~  377 (435)
T cd01359         353 VREKGVPFREAHHIVGRAVRLAEEK  377 (435)
T ss_pred             HHhcCCCHHHHHHHHHHHHHHHHHc
Confidence            98 7999999999999999998654

This group contains ASAL and related proteins. It is a member of the Lyase class I family. Members of this family for the most part catalyze similar beta-elimination reactions in which a C-N or C-O bond is cleaved with the release of fumarate as one of the products. These proteins are active as tetramers. The four active sites of the homotetrameric enzyme are each formed by residues from three different subunits. ASAL is a cytosolic enzyme which catalyzes the reversible breakdown of argininosuccinate to arginine and fumarate during arginine biosynthesis. In ureotelic species ASAL also catalyzes a reaction involved in the production of urea. Included in this group are the major soluble avian eye lens proteins from duck, delta 1 and delta 2 crystallin. Of these two isoforms only delta 2 has retained ASAL activity. These crystallins may have evolved by, gene recruitment of ASAL followed by gene duplication.

>PRK06389 argininosuccinate lyase; Provisional

Probab=100.00  E-value=8.3e-33  Score=289.71  Aligned_cols=205  Identities=14%  Similarity=0.063  Sum_probs=174.2

Q ss_pred             hhhhhHhccHHHHHHHHHHHhh-hcCCCceeecccCcccccchhhhhhhhhhhhHHHHHHcCCCCCC-CcccccccccH-
Q psy14319          2 KFYKYVLGDGDKVKALDRLVTK-KAGFNSSHIITGQTYSRKVDVIVTGVLSSLGASIHKKAGFNSSH-IITGQTYSRKV-   78 (486)
Q Consensus         2 ~~~~~~~~d~~r~~~~~~~~~~-~~g~~~~~a~~g~~~~r~~d~~~~Gt~a~~~~~~a~~LGf~~~~-~~~~av~~RD~-   78 (486)
                      +|+++|.||.+|+.++.++++. ++|   +++.+|++++  +|+          +++|++|||..+. |+.+++.+||+ 
T Consensus       165 a~a~~L~rd~~RL~~~~~r~~~~pLG---aga~~Gt~~~--idr----------~~~A~lLGf~~~~~n~~~a~~~~~~~  229 (434)
T PRK06389        165 YIKSILYHHINNLDSFLMDLREMPYG---YGSGYGSPSS--VKF----------NQMSELLGMEKNIKNPVYSSSLYIKT  229 (434)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhhcchh---hhhhhcCCch--hhH----------HHHHHHhCCCCCCCCCchhhhccchH
Confidence            7999999999999999999995 466   8999999996  884          7899999999986 45677778777 


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHh--ccccccccccCCCCCccCCCCCCchHHHHHHHHHHHHHHHHHHHHH--hhc
Q psy14319         79 DVIVTGVLSSLGASIHKLATDLRLLAH--MKEIEEPFESTQIGSSAMAYKRNPMRSERLCSLARFLMSLHQNSLA--TAS  154 (486)
Q Consensus        79 ~~e~~~~la~la~~LsRlA~DL~l~ss--~~el~e~~~~~~~GSSiMPqKrNP~~~E~ir~~a~~v~g~~~~~l~--~~~  154 (486)
                      +++++++++.++++|+|||+|+++|++  +.++++++   ++|||||||||||+.+|++|++|+++.|.+++.+.  .+.
T Consensus       230 ~~e~~~~la~la~~LsRiA~Dl~l~ss~g~ielpd~~---~~GSSiMPqKrNP~~~E~ir~~a~~v~g~~~~~~~~~~n~  306 (434)
T PRK06389        230 IENISYLISSLAVDLSRICQDIIIYYENGIITIPDEF---TTGSSLMPNKRNPDYLELFQGIAAESISVLSFIAQSELNK  306 (434)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHcCCCEEEecCCC---CCCCCCCCCCcCcHHHHHHHHHHHHHHHHHHHHHHHHcCC
Confidence            789999999999999999999999997  66666655   57999999999999999999999999999987553  367


Q ss_pred             cccccCCCchhhHhhhchHHHHHHHHHHHHHHHHhhhccccCHHhhhhhhcCCCCCCcccccccccCCCCCCCcHHHHHH
Q psy14319        155 TQWMERTLDDSANRRLTLSESFLTTDCLLITLQNVLEGLVVYPKETYSIRIIPDNRLSSHHTTKRSGRPGDGDKVKALDR  234 (486)
Q Consensus       155 ~~~~erDl~~~~~~~~~l~~a~~~~~~~l~~~~~vl~~l~vn~erm~~~~~~~~~~g~~~~~~~~~~~~~~g~~~~~i~~  234 (486)
                      +..|++|+|+.+   ..+++++..+..++.++..++++++||++| ++..                   ..+..++++.+
T Consensus       307 ~~~y~~D~q~~~---~~~~~~~~~~~~~l~l~~~~i~~l~~~~~~-~~a~-------------------~~~~~ATdlA~  363 (434)
T PRK06389        307 TTGYHRDFQIVK---DSTISFINNFERILLGLPDLLYNIKFEITN-EKNI-------------------KNSVYATYNAW  363 (434)
T ss_pred             cchhhHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHhCeECHHH-Hhhc-------------------cCCCcHHHHHH
Confidence            889999999875   688999999999999999999999999999 4411                   11123677777


Q ss_pred             HH-HHHcCCCCCcc
Q psy14319        235 LV-TKKAGFTSSHI  247 (486)
Q Consensus       235 ~l-A~~LGf~~a~~  247 (486)
                      .+ .+.++|+.+|.
T Consensus       364 ~lv~~GipFR~AH~  377 (434)
T PRK06389        364 LAFKNGMDWKSAYA  377 (434)
T ss_pred             HHHHcCCCHHHHHH
Confidence            75 56888888754

>TIGR00838 argH argininosuccinate lyase

Probab=100.00  E-value=1.5e-32  Score=292.96  Aligned_cols=208  Identities=18%  Similarity=0.202  Sum_probs=178.9

Q ss_pred             hhhhhHhccHHHHHHHHHHHhh-hcCCCceeecccCcccccchhhhhhhhhhhhHHHHHHcCCCCCC-CcccccccccHH
Q psy14319          2 KFYKYVLGDGDKVKALDRLVTK-KAGFNSSHIITGQTYSRKVDVIVTGVLSSLGASIHKKAGFNSSH-IITGQTYSRKVD   79 (486)
Q Consensus         2 ~~~~~~~~d~~r~~~~~~~~~~-~~g~~~~~a~~g~~~~r~~d~~~~Gt~a~~~~~~a~~LGf~~~~-~~~~av~~RD~~   79 (486)
                      +|.+.|.||.+|+.++.++++. ++|   .++++|+.++  +|+          ++++++|||..+. |+|+++++||++
T Consensus       169 ~~~~~L~r~~~rL~~~~~~~~~~plG---g~a~aGt~~~--~~r----------~~~a~~LG~~~~~~n~~~a~~~rd~~  233 (455)
T TIGR00838       169 AYAEMLLRDYERLQDALKRVNVSPLG---SGALAGTGFP--IDR----------EYLAELLGFDAVTENSLDAVSDRDFI  233 (455)
T ss_pred             HHHHHHHHHHHHHHHHHHHhccCCcc---hhcccCCCCC--CCH----------HHHHHHcCCCCCcCCHHHHHhCcHHH
Confidence            6899999999999999999985 355   4588999885  774          6899999999986 478999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHh--ccccccccccCCCCCccCCCCCCchHHHHHHHHHHHHHHHHHHHHH--hhcc
Q psy14319         80 VIVTGVLSSLGASIHKLATDLRLLAH--MKEIEEPFESTQIGSSAMAYKRNPMRSERLCSLARFLMSLHQNSLA--TAST  155 (486)
Q Consensus        80 ~e~~~~la~la~~LsRlA~DL~l~ss--~~el~e~~~~~~~GSSiMPqKrNP~~~E~ir~~a~~v~g~~~~~l~--~~~~  155 (486)
                      ++++++++.++++|+|||+||++|++  |+||.+|. ..++|||||||||||+.+|+++++|+++.|...+++.  .+++
T Consensus       234 ~e~~~~l~~~a~~L~ria~Dl~l~ss~e~gei~lp~-~~~~GSSiMP~K~NP~~~E~i~~~a~~~~g~~~~~~~~~~~~~  312 (455)
T TIGR00838       234 LELLFVAALIMVHLSRFAEDLILWSTGEFGFVELPD-EFSSGSSIMPQKKNPDVAELIRGKTGRVQGNLTGMLMTLKALP  312 (455)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhCCCCCeeeCCC-CCCCccCCCCCCcCChHHHHHHHHHHHHhhhHHHHHHHHhcCC
Confidence            99999999999999999999999996  99998874 4478999999999999999999999999999987554  4678


Q ss_pred             ccccCCCchhhHhhhchHHHHHHHHHHHHHHHHhhhccccCHHhhhhhhcCCCCCCcccccccccCCCCCCCcHHHHHHH
Q psy14319        156 QWMERTLDDSANRRLTLSESFLTTDCLLITLQNVLEGLVVYPKETYSIRIIPDNRLSSHHTTKRSGRPGDGDKVKALDRL  235 (486)
Q Consensus       156 ~~~erDl~~~~~~~~~l~~a~~~~~~~l~~~~~vl~~l~vn~erm~~~~~~~~~~g~~~~~~~~~~~~~~g~~~~~i~~~  235 (486)
                      .+||||+++.   +..+++++..+..++..+..++++|+||+++|++..                  ...+..++.+...
T Consensus       313 ~~~~rd~~~~---~~~l~~~~~~~~~al~~~~~~i~~l~v~~~rm~~~~------------------~~~~~~at~la~~  371 (455)
T TIGR00838       313 LAYNRDLQED---KEPLFDALKTVELSLEMATGMLDTITVNKERMEEAA------------------SAGFSNATELADY  371 (455)
T ss_pred             hHhhhhhHhh---HHHHHHHHHHHHHHHHHHHHHHccCEECHHHHHHHH------------------HcCccHHHHHHHH
Confidence            8999999874   678999999999999999999999999999999832                  1122346777777


Q ss_pred             HHH-HcCCCCCc
Q psy14319        236 VTK-KAGFTSSH  246 (486)
Q Consensus       236 lA~-~LGf~~a~  246 (486)
                      +++ .+||+.+|
T Consensus       372 Lv~~g~~~r~Ah  383 (455)
T TIGR00838       372 LVRKGVPFREAH  383 (455)
T ss_pred             HHHcCCCHHHHH
Confidence            665 47777664

This model describes argininosuccinate lyase, but may include examples of avian delta crystallins, in which argininosuccinate lyase activity may or may not be present and the biological role is to provide the optically clear cellular protein of the eye lens.

>PRK00855 argininosuccinate lyase; Provisional

Probab=99.97  E-value=5.6e-32  Score=288.66  Aligned_cols=208  Identities=19%  Similarity=0.217  Sum_probs=178.6

Q ss_pred             hhhhhHhccHHHHHHHHHHHhh-hcCCCceeecccCcccccchhhhhhhhhhhhHHHHHHcCCCCCC-CcccccccccHH
Q psy14319          2 KFYKYVLGDGDKVKALDRLVTK-KAGFNSSHIITGQTYSRKVDVIVTGVLSSLGASIHKKAGFNSSH-IITGQTYSRKVD   79 (486)
Q Consensus         2 ~~~~~~~~d~~r~~~~~~~~~~-~~g~~~~~a~~g~~~~r~~d~~~~Gt~a~~~~~~a~~LGf~~~~-~~~~av~~RD~~   79 (486)
                      +|.+.|.||.+|+.++.++++. ++|   .++++|+.++  +|+          .+++++|||..+. ++.+++++||++
T Consensus       173 ~~~~~L~r~~~rL~~~~~~~~~~plG---gaag~gt~~~--~~r----------~~~a~~LG~~~~~~n~~~a~~~rd~~  237 (459)
T PRK00855        173 AYAEMLARDLERLRDARKRVNRSPLG---SAALAGTTFP--IDR----------ERTAELLGFDGVTENSLDAVSDRDFA  237 (459)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhhcCcc---hhhhcCCCCC--cCH----------HHHHHHcCCCCCCCCHHHHHHccHHH
Confidence            6899999999999999999985 355   5788899996  774          6899999999886 456888999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHh--ccccccccccCCCCCccCCCCCCchHHHHHHHHHHHHHHHHHHHHH--hhcc
Q psy14319         80 VIVTGVLSSLGASIHKLATDLRLLAH--MKEIEEPFESTQIGSSAMAYKRNPMRSERLCSLARFLMSLHQNSLA--TAST  155 (486)
Q Consensus        80 ~e~~~~la~la~~LsRlA~DL~l~ss--~~el~e~~~~~~~GSSiMPqKrNP~~~E~ir~~a~~v~g~~~~~l~--~~~~  155 (486)
                      ++++++++.++++|+|||+||++|++  |+|+.+|. ..++|||||||||||+.+|+++++|+++.|....++.  ..++
T Consensus       238 ~e~~~~l~~la~~L~ria~Dl~l~ss~e~gei~~p~-~~~~gSSiMPqK~NP~~~E~i~~~a~~~~g~~~~~~~~~~~~~  316 (459)
T PRK00855        238 LEFLSAASLLMVHLSRLAEELILWSSQEFGFVELPD-AFSTGSSIMPQKKNPDVAELIRGKTGRVYGNLTGLLTVMKGLP  316 (459)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhCcCCCeEeCCC-CCCCCcCCCCCCCCCHHHHHHHHHHHHHHhhHHHHHHHhcCch
Confidence            99999999999999999999999996  99999985 4568999999999999999999999999999987553  4567


Q ss_pred             ccccCCCchhhHhhhchHHHHHHHHHHHHHHHHhhhccccCHHhhhhhhcCCCCCCcccccccccCCCCCCCcHHHHHHH
Q psy14319        156 QWMERTLDDSANRRLTLSESFLTTDCLLITLQNVLEGLVVYPKETYSIRIIPDNRLSSHHTTKRSGRPGDGDKVKALDRL  235 (486)
Q Consensus       156 ~~~erDl~~~~~~~~~l~~a~~~~~~~l~~~~~vl~~l~vn~erm~~~~~~~~~~g~~~~~~~~~~~~~~g~~~~~i~~~  235 (486)
                      .+|+||+++.   |..+++++..+..++..+..++++|+||+++|++..                  ...+..++.+...
T Consensus       317 ~~~~rD~~~~---~~~l~~~~~~~~~al~~~~~~l~~l~v~~~~m~~~l------------------~~~~~~at~la~~  375 (459)
T PRK00855        317 LAYNRDLQED---KEPLFDAVDTLKLSLEAMAGMLETLTVNKERMREAA------------------GKGFSTATDLADY  375 (459)
T ss_pred             HHhhhhhhhh---HHHHHHHHHHHHHHHHHHHHHHccCEECHHHHHHHH------------------HcchhHHHHHHHH
Confidence            8899999884   578999999999999999999999999999999843                  1223346777777


Q ss_pred             HHH-HcCCCCCc
Q psy14319        236 VTK-KAGFTSSH  246 (486)
Q Consensus       236 lA~-~LGf~~a~  246 (486)
                      +.+ .+||+.+|
T Consensus       376 Lv~~gi~~r~Ah  387 (459)
T PRK00855        376 LVRKGVPFREAH  387 (459)
T ss_pred             HHHcCCCHHHHH
Confidence            655 46677654

>PRK09285 adenylosuccinate lyase; Provisional

Probab=99.97  E-value=3.1e-31  Score=281.67  Aligned_cols=190  Identities=18%  Similarity=0.120  Sum_probs=170.0

Q ss_pred             HHHHHHHHHHHcCCCCCccccccccCccHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhccccccCCCCcCcCCCCCCCc
Q psy14319        229 VKALDRLVTKKAGFTSSHIITGQTYSRKVDVIVTGVLSSLGASIHKLATDLRLLAHMKEIEEPFESTQIGSSAMAYKRNP  308 (486)
Q Consensus       229 ~~~i~~~lA~~LGf~~a~~~~~~~~~rd~~~e~~~~l~~~~~~l~rla~Dl~l~ss~~el~~~~~~~~~GSSiMPqKrNP  308 (486)
                      ++.+.+.+++.|||..+ +..+++.+||+++|++++++.++++|+|||+||++|++++|+.|+++++++|||||||||||
T Consensus       226 ~~~v~~~~~~~LGL~~~-~~~~~v~~rD~~~e~~~~la~~a~~L~kia~Di~ll~~~~e~~e~~~~~~~GSS~MPhKrNP  304 (456)
T PRK09285        226 WHAFSREFVESLGLTWN-PYTTQIEPHDYIAELFDAVARFNTILIDLDRDVWGYISLGYFKQKTKAGEIGSSTMPHKVNP  304 (456)
T ss_pred             HHHHHHHHHHHhCCCCC-CCccchhccHHHHHHHHHHHHHHHHHHHHHHHHHHHhCchhhhccCCCCCCCCCCCCCCcCc
Confidence            56788888889999873 45556899999999999999999999999999999999989999999999999999999999


Q ss_pred             hHHHHHHHHHHHHHHHhHHHHHHhhhhHhhhcccccCCCCCCccccchhhhhhccCCcchhhhhhccCCCCccccccCCC
Q psy14319        309 MRSERLCSLARFLMSLHQNSLATASTQWMERTLDDSANRFPTKSVFSCVTQVKQHGKENDLVDRIRADPYFAPILNQMPT  388 (486)
Q Consensus       309 ~~~E~~~~~a~~~~g~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~g~~~d~~~~~~~~~~~~~~~~~~~~  388 (486)
                      +.+|+++++++.+.+....++......|||||+++|..                                          
T Consensus       305 v~~E~i~~~a~~~~~~~~~~~~~~~~~~~eRD~~~~~~------------------------------------------  342 (456)
T PRK09285        305 IDFENSEGNLGLANALLEHLAAKLPISRWQRDLTDSTV------------------------------------------  342 (456)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHhhccHHhhCCcCchhhh------------------------------------------
Confidence            99999999999999888777765437899999876642                                          


Q ss_pred             CCCCccccCCchhHhhhhhhcccchHHHHHHHHHHHHHHHhchhCCeeCHHHHHHHHhccCChhHHHHHHHHHHHcCCCh
Q psy14319        389 LLDPKSFYGRAPEQQRLSAKGIHTLSESFLTTDCLLITLQNVLEGLVVYPKVIQRHIDQELPFMATENIIMAMVKAGGDR  468 (486)
Q Consensus       389 ~~~p~~~~~~~~~q~~~~~~~~~~l~~~~~~~~~~l~~~~~~l~~l~v~~~~m~~~l~~~~~~~~a~~~~~~L~~~g~~f  468 (486)
                                          +|.. ++++..+..++..+..++++|+||++||++|++.+++ ++||.++..|++  +++
T Consensus       343 --------------------e~~~-~~~~~~~~~~l~~~~~~l~~L~V~~~rm~~nl~~~~~-~~sE~~~~~l~~--~gr  398 (456)
T PRK09285        343 --------------------LRNL-GVAFGYSLIAYDSLLKGLGKLEVNEARLAEDLDANWE-VLAEPIQTVMRR--YGI  398 (456)
T ss_pred             --------------------hcch-HHHHHHHHHHHHHHHHHHccCEECHHHHHHHHHhcCc-chHHHHHHHHHH--hCh
Confidence                                2456 8999999999999999999999999999999999999 899988888887  889


Q ss_pred             HHHHHHHHHHHHHhhhc
Q psy14319        469 QVCHEKIRVLSHQAGAQ  485 (486)
Q Consensus       469 r~Ah~~v~~~~~~a~~~  485 (486)
                      .+||++|+++++++.++
T Consensus       399 ~~A~~~v~~~~~~~~~~  415 (456)
T PRK09285        399 ENPYEKLKELTRGKRIT  415 (456)
T ss_pred             HhHHHHHHHHHHHHHhc
Confidence            99999999999988664

>PRK00485 fumC fumarate hydratase; Reviewed

Probab=99.97  E-value=1.3e-31  Score=285.72  Aligned_cols=192  Identities=17%  Similarity=0.153  Sum_probs=165.0

Q ss_pred             hhhhhHhccHHHHHHHHHHHhhhcCCCceeecccCcccccchhhhhhhhhhhhHHHHHHcCCC-CCC-CcccccccccHH
Q psy14319          2 KFYKYVLGDGDKVKALDRLVTKKAGFNSSHIITGQTYSRKVDVIVTGVLSSLGASIHKKAGFN-SSH-IITGQTYSRKVD   79 (486)
Q Consensus         2 ~~~~~~~~d~~r~~~~~~~~~~~~g~~~~~a~~g~~~~r~~d~~~~Gt~a~~~~~~a~~LGf~-~~~-~~~~av~~RD~~   79 (486)
                      +|++.|.||.+|+.++.++++.+ ++|| +|+ |+.++  +|+..   -..+..++|++|||+ ++. ++.|++++||++
T Consensus       203 ~~~~~l~R~~~RL~~~~~r~~~~-pLGg-~Av-GT~~~--~~~~~---~~~v~~~~A~~LGl~~~~~~n~~da~~~rD~~  274 (464)
T PRK00485        203 GYAAQLEHGIERIEAALPHLYEL-ALGG-TAV-GTGLN--AHPGF---AERVAEELAELTGLPFVTAPNKFEALAAHDAL  274 (464)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHh-ccCC-ccc-cCCcc--CChhH---HHHHHHHHHHHhCCCCccCcCHHHHHhccHHH
Confidence            69999999999999999999853 4423 454 88886  77521   012234799999999 443 456899999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHh-----ccccccccccCCCCCccCCCCCCchHHHHHHHHHHHHHHHHHHHHHhhc
Q psy14319         80 VIVTGVLSSLGASIHKLATDLRLLAH-----MKEIEEPFESTQIGSSAMAYKRNPMRSERLCSLARFLMSLHQNSLATAS  154 (486)
Q Consensus        80 ~e~~~~la~la~~LsRlA~DL~l~ss-----~~el~e~~~~~~~GSSiMPqKrNP~~~E~ir~~a~~v~g~~~~~l~~~~  154 (486)
                      +|+++++++++++|+|||+||++|++     |+||.+|+  +++|||||||||||+++|++|++|+++.|....++..+.
T Consensus       275 ~e~~~~la~la~~L~ria~Dl~l~ss~~~~e~gev~lp~--~~~GSSiMPqKrNP~~~E~ir~~a~~v~g~~~~~~~~~~  352 (464)
T PRK00485        275 VEASGALKTLAVSLMKIANDIRWLASGPRCGLGEISLPE--NEPGSSIMPGKVNPTQCEALTMVCAQVMGNDAAVTFAGS  352 (464)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHcCCccCCCceEEcCC--CCCCCCCCCCCCCcHHHHHHHHHHHHHhhhHHHHHHHhc
Confidence            99999999999999999999999992     99999997  479999999999999999999999999999998776778


Q ss_pred             cccccCCCchhhHhhhchHHHHHHHHHHHHHHHHhhhccccCHHhhhhh
Q psy14319        155 TQWMERTLDDSANRRLTLSESFLTTDCLLITLQNVLEGLVVYPKETYSI  203 (486)
Q Consensus       155 ~~~~erDl~~~~~~~~~l~~a~~~~~~~l~~~~~vl~~l~vn~erm~~~  203 (486)
                      .++||+|...|..+|..++++......++.+...++++|+||++||++.
T Consensus       353 ~~~~e~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~l~~l~v~~erm~~~  401 (464)
T PRK00485        353 QGNFELNVFKPVIAYNFLQSIRLLADAMRSFADHCVVGIEPNRERIKEL  401 (464)
T ss_pred             cCcccccccChHHHHHHHHHHHHHHHHHHHHHHHHHccCEECHHHHHHH
Confidence            8999999999988899888888888888888889999999999999984

>PRK09053 3-carboxy-cis,cis-muconate cycloisomerase; Provisional

Probab=99.97  E-value=1.5e-31  Score=284.81  Aligned_cols=189  Identities=21%  Similarity=0.166  Sum_probs=164.8

Q ss_pred             hhhhhHhccHHHHHHHHHHHhhhcCCCceeecccCcccccchhhhhhhhhhhhHHHHHHcCCCCCCCcccccccccHHHH
Q psy14319          2 KFYKYVLGDGDKVKALDRLVTKKAGFNSSHIITGQTYSRKVDVIVTGVLSSLGASIHKKAGFNSSHIITGQTYSRKVDVI   81 (486)
Q Consensus         2 ~~~~~~~~d~~r~~~~~~~~~~~~g~~~~~a~~g~~~~r~~d~~~~Gt~a~~~~~~a~~LGf~~~~~~~~av~~RD~~~e   81 (486)
                      +|++.|.||.+|+.++.+++... ++||+ +.++.+++        |+.-.+.+++|++|||..|..+|+  .+||+++|
T Consensus       170 ~~~~~l~r~~~RL~~~~~~~~~~-~lGga-vGt~~~~~--------~~~~~v~~~~a~~LGl~~~~~~~~--~~rD~~~e  237 (452)
T PRK09053        170 GWLDALLRHRQRLAALRPRALVL-QFGGA-AGTLASLG--------EQALPVAQALAAELQLALPALPWH--TQRDRIAE  237 (452)
T ss_pred             HHHHHHHHHHHHHHHHHhhhhhc-cccch-hhcccccc--------cchHHHHHHHHHHcCCCCCCCCcc--cccHHHHH
Confidence            68999999999999999999842 44343 33333332        111122469999999999887775  69999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHh--ccccccccccCCCCCccCCCCCCchHHHHHHHHHHHHHHHHHHHHHhhcccccc
Q psy14319         82 VTGVLSSLGASIHKLATDLRLLAH--MKEIEEPFESTQIGSSAMAYKRNPMRSERLCSLARFLMSLHQNSLATASTQWME  159 (486)
Q Consensus        82 ~~~~la~la~~LsRlA~DL~l~ss--~~el~e~~~~~~~GSSiMPqKrNP~~~E~ir~~a~~v~g~~~~~l~~~~~~~~e  159 (486)
                      ++++++.++++|+|||+||++|++  |+|+.+|+..+++|||||||||||+.+|+++++|+++.|+...+ +.+++++||
T Consensus       238 ~~~~la~la~~L~kia~Di~ll~~~e~gev~e~~~~~~~GSSiMP~KrNPv~~E~i~~~a~~v~g~~~~~-~~~~~~~~e  316 (452)
T PRK09053        238 FASALGLLAGTLGKIARDVSLLMQTEVGEVFEPAAAGKGGSSTMPHKRNPVGCAAVLTAATRAPGLVATL-FAAMPQEHE  316 (452)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhccccchhhccccCCCCCcCCCCCCCCchHHHHHHHHHHHHHHHHHHH-HHhChhhhc
Confidence            999999999999999999999995  99999988778999999999999999999999999999999874 677899999


Q ss_pred             CCCchhhHhhhchHHHHHHHHHHHHHHHHhhhccccCHHhhhhh
Q psy14319        160 RTLDDSANRRLTLSESFLTTDCLLITLQNVLEGLVVYPKETYSI  203 (486)
Q Consensus       160 rDl~~~~~~~~~l~~a~~~~~~~l~~~~~vl~~l~vn~erm~~~  203 (486)
                      ||...|..+|..+++++..+..++..+..++++|+||++||++.
T Consensus       317 rd~~~~~~~~~~l~~~~~~~~~al~~~~~~l~~l~v~~erm~~~  360 (452)
T PRK09053        317 RALGGWHAEWDTLPELACLAAGALAQMAQIVEGLEVDAARMRAN  360 (452)
T ss_pred             ccCCccHHHHHHHHHHHHHHHHHHHHHHHHHcCCEECHHHHHHH
Confidence            99999999999999999999999999999999999999999983

>PRK06390 adenylosuccinate lyase; Provisional

Probab=99.97  E-value=1.5e-31  Score=284.63  Aligned_cols=213  Identities=24%  Similarity=0.304  Sum_probs=173.8

Q ss_pred             hhhhhHhccHHHHHHHHHHHhhh-c-CCCceeecccCcccccchhhhhhhhhhhhHHHHHHcCCCCCCCcccccccccHH
Q psy14319          2 KFYKYVLGDGDKVKALDRLVTKK-A-GFNSSHIITGQTYSRKVDVIVTGVLSSLGASIHKKAGFNSSHIITGQTYSRKVD   79 (486)
Q Consensus         2 ~~~~~~~~d~~r~~~~~~~~~~~-~-g~~~~~a~~g~~~~r~~d~~~~Gt~a~~~~~~a~~LGf~~~~~~~~av~~RD~~   79 (486)
                      +|++.|.||.+|+.++.++++.. + |--|+++..|+.++  .+          .+++|++|||..+..+| ++++||++
T Consensus       164 ~~~~~l~r~~~RL~~~~~r~~~~~~~gavGt~a~~g~~~~--~~----------~~~~a~~LGl~~~~~~~-~~~~rD~~  230 (451)
T PRK06390        164 VYLDEMSRHLDRLTEMGDRAFAGKVLGPVGTGAALGKDAL--DI----------QNRVMEILGIYSEIGST-QIVNRDRY  230 (451)
T ss_pred             HHHHHHHHHHHHHHHHHHHhhhhccCChhcChhhCCCcHH--HH----------HHHHHHHcCCCCCCCcc-ccccchHH
Confidence            69999999999999999988721 1 11124555665543  33          46999999999976554 78999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHh--ccccccccc-cCCCCCccCCCCCCchHHHHHHHHHHHHHHHHHHHHHhhccc
Q psy14319         80 VIVTGVLSSLGASIHKLATDLRLLAH--MKEIEEPFE-STQIGSSAMAYKRNPMRSERLCSLARFLMSLHQNSLATASTQ  156 (486)
Q Consensus        80 ~e~~~~la~la~~LsRlA~DL~l~ss--~~el~e~~~-~~~~GSSiMPqKrNP~~~E~ir~~a~~v~g~~~~~l~~~~~~  156 (486)
                      ++++++++.++++|+|||+||++|++  |+++.|++. ++++|||||||||||+.+|.+++++..+.+... ........
T Consensus       231 ~e~~~~l~~la~~l~kia~Di~l~ss~e~g~v~E~~~~~~~~GSSiMP~KrNPv~~E~i~~~a~~~~~l~~-~~~~~~~~  309 (451)
T PRK06390        231 IEYLSVINGISVTLEKIATEIRNLQRPEIDEVSEYFDEESQVGSSSMPSKVNPINSENVVSLSRFIRSLII-PEYEAGVT  309 (451)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhccccchhhcccccCCCCCccCCCCCCCcHHHHHHHHHHHHHHHhHH-HHHHhhhH
Confidence            99999999999999999999999996  999988775 489999999999999999999999988877766 45556678


Q ss_pred             cccCCCchhhHhhhchHHHHHHHHHHHHHHHHhhhccccCHHhhhhhhcCCCCCCcccccccccCCCCCCCc-HHHHHHH
Q psy14319        157 WMERTLDDSANRRLTLSESFLTTDCLLITLQNVLEGLVVYPKETYSIRIIPDNRLSSHHTTKRSGRPGDGDK-VKALDRL  235 (486)
Q Consensus       157 ~~erDl~~~~~~~~~l~~a~~~~~~~l~~~~~vl~~l~vn~erm~~~~~~~~~~g~~~~~~~~~~~~~~g~~-~~~i~~~  235 (486)
                      +|+||+++|+.+|..++..+..+..++..+..++++++||++||++....                  .|.. .+.+...
T Consensus       310 ~~erd~~~~~~e~~~~~~~~~~~~~~l~~~~~~l~~l~v~~~rm~~~l~~------------------~~~~~se~la~~  371 (451)
T PRK06390        310 WHERDLTNSALERFTIPYASILIDYVLYNMNDVLSHLIIKEDEIRRNLES------------------DDSIMSESIVRA  371 (451)
T ss_pred             hhccCCcchHHHHhhHHHHHHHHHHHHHHHHHHHcCCEECHHHHHHHHhc------------------cchhhHHHHHHH
Confidence            89999999999999899999999999999999999999999999983211                  1122 3457676


Q ss_pred             HHH-HcCCCCCc
Q psy14319        236 VTK-KAGFTSSH  246 (486)
Q Consensus       236 lA~-~LGf~~a~  246 (486)
                      +++ .+||+.+|
T Consensus       372 L~~~G~~~~~Ah  383 (451)
T PRK06390        372 LTLSGMPRQDAH  383 (451)
T ss_pred             HHHcCCCHHHHH
Confidence            666 36676654

>PRK08937 adenylosuccinate lyase; Provisional

Probab=99.97  E-value=7.5e-31  Score=253.65  Aligned_cols=159  Identities=41%  Similarity=0.647  Sum_probs=147.1

Q ss_pred             HHHHHHHHHHHHHHHHHHHhh--hhhccccccCCCCcCcCCCCCCCchHHHHHHHHHHHHHHHhHHHHHHhhhhHhhhcc
Q psy14319        264 VLSSLGASIHKLATDLRLLAH--MKEIEEPFESTQIGSSAMAYKRNPMRSERLCSLARFLMSLHQNSLATASTQWMERTL  341 (486)
Q Consensus       264 ~l~~~~~~l~rla~Dl~l~ss--~~el~~~~~~~~~GSSiMPqKrNP~~~E~~~~~a~~~~g~~~~~~~~~~~~~~e~~~  341 (486)
                      +++.++++++|+|+||++|++  |||+.+|++.+++|||||||||||+.+|+++++++.+.|+..+++... ..++|||+
T Consensus        22 ~l~~i~~~l~ria~Dl~~~~s~e~gei~~~~~~~~~gSSiMP~K~NP~~~E~i~~~a~~~~g~~~~~~~~~-~~~~erd~  100 (216)
T PRK08937         22 VLALIATSLEKFANEIRLLQRSEIREVEEPFAKGQKGSSAMPHKRNPIGSERITGLARVLRSYLVTALENV-PLWHERDL  100 (216)
T ss_pred             HHHHHHHHHHHHHHHHHHHhccccceeecccccCCCCCccCCCccCcHHHHHHHHHHHHHHHHHHHHHHHh-HHHhccCC
Confidence            899999999999999999999  999999998899999999999999999999999999999999988775 78888887


Q ss_pred             cccCCCCCCccccchhhhhhccCCcchhhhhhccCCCCccccccCCCCCCCccccCCchhHhhhhhhcccchHHHHHHHH
Q psy14319        342 DDSANRFPTKSVFSCVTQVKQHGKENDLVDRIRADPYFAPILNQMPTLLDPKSFYGRAPEQQRLSAKGIHTLSESFLTTD  421 (486)
Q Consensus       342 ~~~~~~~~~~~~~~~~~~~~~~g~~~d~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~q~~~~~~~~~~l~~~~~~~~  421 (486)
                      ..|.                                                              .+|..+++++..+.
T Consensus       101 ~~~~--------------------------------------------------------------~~~~~l~~~~~~~~  118 (216)
T PRK08937        101 SHSS--------------------------------------------------------------AERIALPDAFLALD  118 (216)
T ss_pred             chhH--------------------------------------------------------------HHhhHHHHHHHHHH
Confidence            5431                                                              13568999999999


Q ss_pred             HHHHHHHhchhCCeeCHHHHHHHHhccCChhHHHHHHHHHHHcCCChHHHHHHHHHHHHHhhhc
Q psy14319        422 CLLITLQNVLEGLVVYPKVIQRHIDQELPFMATENIIMAMVKAGGDRQVCHEKIRVLSHQAGAQ  485 (486)
Q Consensus       422 ~~l~~~~~~l~~l~v~~~~m~~~l~~~~~~~~a~~~~~~L~~~g~~fr~Ah~~v~~~~~~a~~~  485 (486)
                      .++..+..++++++||++||+++++.+.++++++.+++.|++.|+|||+||++|+++++.+.++
T Consensus       119 ~~l~~~~~~l~~l~v~~~rm~~~~~~~~~~~~a~~l~~~L~~~g~~~~~Ah~~v~~~~~~~~~~  182 (216)
T PRK08937        119 YILNRFVNILENLVVFPENIERNLDKTLGFIATERVLLELVEKGMGREEAHELIREKAMEAWKN  182 (216)
T ss_pred             HHHHHHHHHHccCEECHHHHHHHHHHhcChHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHh
Confidence            9999999999999999999999999999999999999999999999999999999999987653

>cd01334 Lyase_I Lyase class I family; a group of proteins which catalyze similar beta-elimination reactions

Probab=99.97  E-value=2.6e-31  Score=272.04  Aligned_cols=181  Identities=27%  Similarity=0.244  Sum_probs=161.8

Q ss_pred             hhhhhHhccHHHHHHHHHHHhhhcCCCceeecccCcccccchhhhhhhhhhhhHHHHHHcCC-CCCCCcccccccccHHH
Q psy14319          2 KFYKYVLGDGDKVKALDRLVTKKAGFNSSHIITGQTYSRKVDVIVTGVLSSLGASIHKKAGF-NSSHIITGQTYSRKVDV   80 (486)
Q Consensus         2 ~~~~~~~~d~~r~~~~~~~~~~~~g~~~~~a~~g~~~~r~~d~~~~Gt~a~~~~~~a~~LGf-~~~~~~~~av~~RD~~~   80 (486)
                      +|.+.|.||.+|+.++.++++.. ++ |++|+.|+.+..++|          ++++|++||| ..+.++|+++++||+++
T Consensus       142 ~~~~~l~r~~~rL~~~~~~~~~~-~l-G~gA~g~~~~~~~~~----------~~~~a~~LG~~~~~~~~~~a~~~rd~~~  209 (325)
T cd01334         142 AWAAELERDLERLEEALKRLNVL-PL-GGGAVGTGANAPPID----------RERVAELLGFFGPAPNSTQAVSDRDFLV  209 (325)
T ss_pred             HHHHHHHHHHHHHHHHHHHhhhc-CC-cHhHHhCcCCCCcch----------HHHHHHHhcCcCcCcCHHHHHhCcHHHH
Confidence            68999999999999999999743 44 368888887721266          5799999999 55567889999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHh--ccccccccccCCCCCccCCCCCCchHHHHHHHHHHHHHHHHHHHHHhhccccc
Q psy14319         81 IVTGVLSSLGASIHKLATDLRLLAH--MKEIEEPFESTQIGSSAMAYKRNPMRSERLCSLARFLMSLHQNSLATASTQWM  158 (486)
Q Consensus        81 e~~~~la~la~~LsRlA~DL~l~ss--~~el~e~~~~~~~GSSiMPqKrNP~~~E~ir~~a~~v~g~~~~~l~~~~~~~~  158 (486)
                      |++++++.++++++|||+|+++|++  |+|+.+|+.. ++|||||||||||+.+|+++++++++.|.... +...+..++
T Consensus       210 e~~~~l~~~~~~l~ria~Dl~~~~~~e~gev~~~~~~-~~gSS~MP~KrNP~~~E~i~~~a~~~~g~~~~-~~~~~~~~~  287 (325)
T cd01334         210 ELLSALALLAVSLSKIANDLRLLSSGEFGEVELPDAK-QPGSSIMPQKVNPVILELVRGLAGRVIGNLAA-LLEALKGGP  287 (325)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHcCCCCCeEECCCCC-CCCcccCCCCCCCHHHHHHHHHHHHHhhHHHH-HHHHHhcCc
Confidence            9999999999999999999999996  9999999854 89999999999999999999999999999986 445677888


Q ss_pred             cCCCchhhHhhhchHHHHHHHHHHHHHHHHhhhccccC
Q psy14319        159 ERTLDDSANRRLTLSESFLTTDCLLITLQNVLEGLVVY  196 (486)
Q Consensus       159 erDl~~~~~~~~~l~~a~~~~~~~l~~~~~vl~~l~vn  196 (486)
                      ++|..+|+.+|..+++++..+..++..+..++++|+||
T Consensus       288 ~~~~~~~~~~~~~l~~~~~~~~~~l~~~~~~~~~l~v~  325 (325)
T cd01334         288 LEDNVDSPVEREALPDSFDLLDAALRLLTGVLEGLEVN  325 (325)
T ss_pred             hhhhcccHHHHHHHHHHHHHHHHHHHHHHHHhCcCEeC
Confidence            88999999999999999999999999999999999986

The Lyase class I family contains class II fumarase, aspartase, adenylosuccinate lyase (ASL), argininosuccinate lyase (ASAL), prokaryotic-type 3-carboxy-cis,cis-muconate cycloisomerase (pCMLE), and related proteins. It belongs to the Lyase_I superfamily. Proteins of this family for the most part catalyze similar beta-elimination reactions in which a C-N or C-O bond is cleaved with the release of fumarate as one of the products. These proteins are active as tetramers. The four active sites of the homotetrameric enzyme are each formed by residues from three different subunits.

>PRK06389 argininosuccinate lyase; Provisional

Probab=99.97  E-value=1.8e-30  Score=272.24  Aligned_cols=191  Identities=17%  Similarity=0.107  Sum_probs=153.7

Q ss_pred             CCCCcHHHHHHHHHHHcCCCCCc-cccccccCc-cHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhccccccCCCCcCcC
Q psy14319        224 GDGDKVKALDRLVTKKAGFTSSH-IITGQTYSR-KVDVIVTGVLSSLGASIHKLATDLRLLAHMKEIEEPFESTQIGSSA  301 (486)
Q Consensus       224 ~~g~~~~~i~~~lA~~LGf~~a~-~~~~~~~~r-d~~~e~~~~l~~~~~~l~rla~Dl~l~ss~~el~~~~~~~~~GSSi  301 (486)
                      +.|+..+.+++++++.|||..+. |....+.++ |.+++++++++.++.+|+|||+|+++|++.++++.| +..++||||
T Consensus       194 ~~Gt~~~idr~~~A~lLGf~~~~~n~~~a~~~~~~~~~e~~~~la~la~~LsRiA~Dl~l~ss~g~ielp-d~~~~GSSi  272 (434)
T PRK06389        194 GYGSPSSVKFNQMSELLGMEKNIKNPVYSSSLYIKTIENISYLISSLAVDLSRICQDIIIYYENGIITIP-DEFTTGSSL  272 (434)
T ss_pred             hhcCCchhhHHHHHHHhCCCCCCCCCchhhhccchHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCEEEec-CCCCCCCCC
Confidence            34556677899999999999755 333333454 558899999999999999999999999996666654 455799999


Q ss_pred             CCCCCCchHHHHHHHHHHHHHHHhHHHHHHhhhhHhhhcccccCCCCCCccccchhhhhhccCCcchhhhhhccCCCCcc
Q psy14319        302 MAYKRNPMRSERLCSLARFLMSLHQNSLATASTQWMERTLDDSANRFPTKSVFSCVTQVKQHGKENDLVDRIRADPYFAP  381 (486)
Q Consensus       302 MPqKrNP~~~E~~~~~a~~~~g~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~g~~~d~~~~~~~~~~~~~  381 (486)
                      |||||||+.+|+++++|+++.|.++++....      .+++                    .||++|+            
T Consensus       273 MPqKrNP~~~E~ir~~a~~v~g~~~~~~~~~------~n~~--------------------~~y~~D~------------  314 (434)
T PRK06389        273 MPNKRNPDYLELFQGIAAESISVLSFIAQSE------LNKT--------------------TGYHRDF------------  314 (434)
T ss_pred             CCCCcCcHHHHHHHHHHHHHHHHHHHHHHHH------cCCc--------------------chhhHHH------------
Confidence            9999999999999999999999888776542      2222                    1455554            


Q ss_pred             ccccCCCCCCCccccCCchhHhhhhhhcccchHHHHHHHHHHHHHHHhchhCCeeCHHHHHHHHhccCChhHHHHHHHHH
Q psy14319        382 ILNQMPTLLDPKSFYGRAPEQQRLSAKGIHTLSESFLTTDCLLITLQNVLEGLVVYPKVIQRHIDQELPFMATENIIMAM  461 (486)
Q Consensus       382 ~~~~~~~~~~p~~~~~~~~~q~~~~~~~~~~l~~~~~~~~~~l~~~~~~l~~l~v~~~~m~~~l~~~~~~~~a~~~~~~L  461 (486)
                                          |+..     ..+.+++..+..++.++..++++++||+++ ++.+  .. +.+|+++|+.+
T Consensus       315 --------------------q~~~-----~~~~~~~~~~~~~l~l~~~~i~~l~~~~~~-~~a~--~~-~~~ATdlA~~l  365 (434)
T PRK06389        315 --------------------QIVK-----DSTISFINNFERILLGLPDLLYNIKFEITN-EKNI--KN-SVYATYNAWLA  365 (434)
T ss_pred             --------------------HHHH-----HHHHHHHHHHHHHHHHHHHHHHhCeECHHH-Hhhc--cC-CCcHHHHHHHH
Confidence                                4443     478889999999999999999999999999 4443  22 34599999999


Q ss_pred             HHcCCChHHHHHHHHHHHHHh
Q psy14319        462 VKAGGDRQVCHEKIRVLSHQA  482 (486)
Q Consensus       462 ~~~g~~fr~Ah~~v~~~~~~a  482 (486)
                      |++|+|||+||++|+++|+.+
T Consensus       366 v~~GipFR~AH~~Vg~~V~~~  386 (434)
T PRK06389        366 FKNGMDWKSAYAYIGNKIREG  386 (434)
T ss_pred             HHcCCCHHHHHHHHHHHHHhc
Confidence            999999999999999999875

>KOG2700|consensus

Probab=99.97  E-value=1.6e-30  Score=264.94  Aligned_cols=235  Identities=49%  Similarity=0.684  Sum_probs=187.2

Q ss_pred             HHHHHcCCCCCCCcccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccccccCCCCCccCCCCCCchHHHHH
Q psy14319         56 SIHKKAGFNSSHIITGQTYSRKVDVIVTGVLSSLGASIHKLATDLRLLAHMKEIEEPFESTQIGSSAMAYKRNPMRSERL  135 (486)
Q Consensus        56 ~~a~~LGf~~~~~~~~av~~RD~~~e~~~~la~la~~LsRlA~DL~l~ss~~el~e~~~~~~~GSSiMPqKrNP~~~E~i  135 (486)
                      .+++++||.++..-+.|+.+||...+.+..+++++++..|+|.|++++..|.|+.|||.++++|||.|||||||+.+|.+
T Consensus       222 Lv~k~~gf~~~~~~TGQt~sr~~~~~~~~~la~lgat~~k~~Tdirll~~~~ev~epFea~q~gsSaMp~krNpm~~E~i  301 (481)
T KOG2700|consen  222 LVTKELGFVPMYIVTGQTYSRKTDAEEVAPLASLGATAHKYATDIRLLAKFAEVEEPFEAHQIGSSAMPYKRNPMRCERI  301 (481)
T ss_pred             HHHHHhCCCccccccCCcCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccccccccCCCCCCCchhHHH
Confidence            45566666666554556667777789999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHhhccccccCCCchhhHhhhchHHHHHHHHHHHHHHHHhhhccccCHHhhhhhhcCCCCCCcccc
Q psy14319        136 CSLARFLMSLHQNSLATASTQWMERTLDDSANRRLTLSESFLTTDCLLITLQNVLEGLVVYPKETYSIRIIPDNRLSSHH  215 (486)
Q Consensus       136 r~~a~~v~g~~~~~l~~~~~~~~erDl~~~~~~~~~l~~a~~~~~~~l~~~~~vl~~l~vn~erm~~~~~~~~~~g~~~~  215 (486)
                      .++++.+.+..+..+..+...|+||++.+|.++|..+|++|..+++.|....++++|+.|.|.+|++             
T Consensus       302 tslar~l~~~v~~al~~~~~qw~Ertl~dSa~~rivlP~~Fl~ad~~L~~~~ni~~gl~v~p~~i~r-------------  368 (481)
T KOG2700|consen  302 TSLARHLRPYVTQALNTASVQWHERTLDDSANRRIVLPDAFLTADGNLGTLLNILEGLVVYPKVIER-------------  368 (481)
T ss_pred             hHHHHHHHHHHHHHhhhHHHHHhhcccccccccceechHHHHHHHHHHHHHHHHHhhcccccHHHHH-------------
Confidence            9999999999988776678899999999999999999999999999999999999999999999987             


Q ss_pred             cccccCCCCCCCcHHHHHHHHHHHcCCCCCccccccccCccHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhccccccCC
Q psy14319        216 TTKRSGRPGDGDKVKALDRLVTKKAGFTSSHIITGQTYSRKVDVIVTGVLSSLGASIHKLATDLRLLAHMKEIEEPFEST  295 (486)
Q Consensus       216 ~~~~~~~~~~g~~~~~i~~~lA~~LGf~~a~~~~~~~~~rd~~~e~~~~l~~~~~~l~rla~Dl~l~ss~~el~~~~~~~  295 (486)
                                         ++.+.+||-...|             +.+++.--+.                         
T Consensus       369 -------------------~i~~e~~~~~~en-------------i~mAL~~~g~-------------------------  391 (481)
T KOG2700|consen  369 -------------------NIRDELPFMVLEN-------------IIMALVKAGL-------------------------  391 (481)
T ss_pred             -------------------HHHhhhhHHHHHH-------------HHHHHHHhcc-------------------------
Confidence                               1333344433211             1112211111                         


Q ss_pred             CCcCcCCCCCCCchHHHHHHHHHHHHHHHhHHHHHHhhhhHhhhcccccCCCCCCccccchhhhhhccCCcchhhhhhcc
Q psy14319        296 QIGSSAMAYKRNPMRSERLCSLARFLMSLHQNSLATASTQWMERTLDDSANRFPTKSVFSCVTQVKQHGKENDLVDRIRA  375 (486)
Q Consensus       296 ~~GSSiMPqKrNP~~~E~~~~~a~~~~g~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~g~~~d~~~~~~~  375 (486)
                         |               |.-|...++.++.-                           ....|+++|+.||++|+++.
T Consensus       392 ---s---------------rq~ahe~I~~L~~~---------------------------a~~~v~~e~g~~~~ie~~k~  426 (481)
T KOG2700|consen  392 ---S---------------RQEAHEGIRKLSHQ---------------------------AAQVVKQEGGDNDLIERAKE  426 (481)
T ss_pred             ---c---------------HHHHHHHHHHHHHH---------------------------HHHHHHHhcCCcHHHHHhcc
Confidence               1               11111112211100                           01246888999999999999


Q ss_pred             CCCCccccccCCCCCCCccccCCchhHhhh
Q psy14319        376 DPYFAPILNQMPTLLDPKSFYGRAPEQQRL  405 (486)
Q Consensus       376 ~~~~~~~~~~~~~~~~p~~~~~~~~~q~~~  405 (486)
                      +|||+||+++++..+||+.|.||+++|...
T Consensus       427 ~~~~~~v~ee~~~ll~p~~f~gra~dQie~  456 (481)
T KOG2700|consen  427 DPTFKPVKEELDSLLDPLNFTGRAVDQIEK  456 (481)
T ss_pred             cccccchHHHHHhhccchhcccccHHHHHH
Confidence            999999999999999999999999999876

>cd01598 PurB PurB_like adenylosuccinases (adenylsuccinate lyase, ASL)

Probab=99.97  E-value=1.4e-30  Score=274.18  Aligned_cols=185  Identities=17%  Similarity=0.141  Sum_probs=163.5

Q ss_pred             HHHHHHHHHHHcCCCCCccccccccCccHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhccccccCCCCcCcCCCCCCCc
Q psy14319        229 VKALDRLVTKKAGFTSSHIITGQTYSRKVDVIVTGVLSSLGASIHKLATDLRLLAHMKEIEEPFESTQIGSSAMAYKRNP  308 (486)
Q Consensus       229 ~~~i~~~lA~~LGf~~a~~~~~~~~~rd~~~e~~~~l~~~~~~l~rla~Dl~l~ss~~el~~~~~~~~~GSSiMPqKrNP  308 (486)
                      +..+.+.+++.|||..+ +..+++++||+++|++++++.++++++|||+||++|++-+|+.|+++++++|||||||||||
T Consensus       204 ~~~~~~~~a~~LgL~~~-~~~~~v~~rD~~~e~~~~La~la~~L~kia~Di~ll~s~ge~~e~~~~~~~GSS~MPhKrNP  282 (425)
T cd01598         204 WRKFSEFFVTSLGLTWN-PYTTQIEPHDYIAELFDALARINTILIDLCRDIWGYISLGYFKQKVKKGEVGSSTMPHKVNP  282 (425)
T ss_pred             HHHHHHHHHHHhCcCCC-CcccchhccHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCcceeecCCCCCCCcCCCCCCcCc
Confidence            47889999999999975 44556899999999999999999999999999999999888888888999999999999999


Q ss_pred             hHHHHHHHHHHHHHHHhHHHHHHhhhhHhhhcccccCCCCCCccccchhhhhhccCCcchhhhhhccCCCCccccccCCC
Q psy14319        309 MRSERLCSLARFLMSLHQNSLATASTQWMERTLDDSANRFPTKSVFSCVTQVKQHGKENDLVDRIRADPYFAPILNQMPT  388 (486)
Q Consensus       309 ~~~E~~~~~a~~~~g~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~g~~~d~~~~~~~~~~~~~~~~~~~~  388 (486)
                      +.+|+++++++.+.+....+.......++|||+.+|..                                          
T Consensus       283 v~~E~i~~~a~~a~~~~~~~~~~~~~~~~eRD~~~~~~------------------------------------------  320 (425)
T cd01598         283 IDFENAEGNLGLSNALLNHLSAKLPISRLQRDLTDSTV------------------------------------------  320 (425)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHhhhhhhhhcccccchhh------------------------------------------
Confidence            99999999999998888766655436889999876532                                          


Q ss_pred             CCCCccccCCchhHhhhhhhcccchHHHHHHHHHHHHHHHhchhCCeeCHHHHHHHHhccCChhHHHHHHHHHHHcCCCh
Q psy14319        389 LLDPKSFYGRAPEQQRLSAKGIHTLSESFLTTDCLLITLQNVLEGLVVYPKVIQRHIDQELPFMATENIIMAMVKAGGDR  468 (486)
Q Consensus       389 ~~~p~~~~~~~~~q~~~~~~~~~~l~~~~~~~~~~l~~~~~~l~~l~v~~~~m~~~l~~~~~~~~a~~~~~~L~~~g~~f  468 (486)
                                          +|.. ++++..+..++..+..++++|+||++||++|++.+++ ++||.++..|++  +++
T Consensus       321 --------------------e~~~-~~~~~~~~~al~~~~~ll~~L~v~~~rm~~nl~~~~~-i~sE~~~~~l~~--~gr  376 (425)
T cd01598         321 --------------------LRNI-GVAFGHSLIAYKSLLRGLDKLELNEARLLEDLDANWE-VLAEPIQTVMRR--YGI  376 (425)
T ss_pred             --------------------hccH-HHHHHHHHHHHHHHHHHHccCEECHHHHHHHHHhCcC-HHHHHHHHHHHh--cCh
Confidence                                2456 8999999999999999999999999999999999998 788877776665  788


Q ss_pred             HHHHHHHHHHHH
Q psy14319        469 QVCHEKIRVLSH  480 (486)
Q Consensus       469 r~Ah~~v~~~~~  480 (486)
                      ++||++|+++++
T Consensus       377 ~~Ah~~V~~~~~  388 (425)
T cd01598         377 PNPYEKLKDLTR  388 (425)
T ss_pred             HhHHHHHHHHhC
Confidence            999999999987

This subgroup contains EcASL, the product of the purB gene in Escherichia coli, and related proteins. It is a member of the Lyase class I family of the Lyase_I superfamily. Members of the Lyase class I family function as homotetramers to catalyze similar beta-elimination reactions in which a Calpha-N or Calpha-O bond is cleaved with the subsequent release of fumarate as one of the products. The four active sites of the homotetrameric enzyme are each formed by residues from three different subunits. ASL catalyzes two non-sequential steps in the de novo purine biosynthesis pathway: the conversion of 5-aminoimidazole-(N-succinylocarboxamide) ribotide (SAICAR) into 5-aminoimidazole-4-carboxamide ribotide (AICAR) and; the conversion of adenylsuccinate (SAMP) into adenosine monophosphate (AMP).

>PRK12273 aspA aspartate ammonia-lyase; Provisional

Probab=99.97  E-value=1.4e-30  Score=278.07  Aligned_cols=189  Identities=20%  Similarity=0.204  Sum_probs=158.6

Q ss_pred             hhhhhHhccHHHHHHHHHHHhhhcCCCceeecccCcccccchhhhhhhhhhhhHHHHHHcCCCC-C-CCcccccccccHH
Q psy14319          2 KFYKYVLGDGDKVKALDRLVTKKAGFNSSHIITGQTYSRKVDVIVTGVLSSLGASIHKKAGFNS-S-HIITGQTYSRKVD   79 (486)
Q Consensus         2 ~~~~~~~~d~~r~~~~~~~~~~~~g~~~~~a~~g~~~~r~~d~~~~Gt~a~~~~~~a~~LGf~~-~-~~~~~av~~RD~~   79 (486)
                      +|++.|.||.+|+.++.++++.+ ++| .+|+ |+.++  +|+..   .....+++|++|||.. + .++.|++++||++
T Consensus       205 ~~~~~l~r~~~RL~~~~~~~~~~-plG-g~Av-GT~~~--i~~~~---~~~v~~~~A~~LGf~~~~~~n~~da~~~rD~~  276 (472)
T PRK12273        205 AYAVALAEDRKRLYRAAELLREV-NLG-ATAI-GTGLN--APPGY---IELVVEKLAEITGLPLVPAEDLIEATQDTGAF  276 (472)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhhc-CCC-ccce-eCCCC--CChhH---HHHHHHHHHHHcCCCcccCcCHHHHHhCcHHH
Confidence            69999999999999999999853 442 4567 88886  77521   0133457899999995 3 4567999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHh-----ccccccccccCCCCCccCCCCCCchHHHHHHHHHHHHHHHHHHHHH--h
Q psy14319         80 VIVTGVLSSLGASIHKLATDLRLLAH-----MKEIEEPFESTQIGSSAMAYKRNPMRSERLCSLARFLMSLHQNSLA--T  152 (486)
Q Consensus        80 ~e~~~~la~la~~LsRlA~DL~l~ss-----~~el~e~~~~~~~GSSiMPqKrNP~~~E~ir~~a~~v~g~~~~~l~--~  152 (486)
                      +|++++++.++++|+|||+||++|++     |+||.+|+  +++|||||||||||+.+|++|++|+++.|+..+++.  .
T Consensus       277 ~e~~~~la~la~~L~rlA~Di~llss~e~~e~gev~lp~--~~~GSSiMPqKrNP~~~E~ir~~a~~v~G~~~~~~~~~~  354 (472)
T PRK12273        277 VEVSGALKRLAVKLSKICNDLRLLSSGPRAGLNEINLPA--VQAGSSIMPGKVNPVIPEVVNQVCFQVIGNDTTVTMAAE  354 (472)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhcCcccCceEEECCC--CCCcCCCCCcccCcHHHHHHHHHHHHHhhhHHHHHHHHH
Confidence            99999999999999999999999993     89999985  789999999999999999999999999999987553  4


Q ss_pred             hccccccCCCchhhHhhhchHHHHHHHHHHHHHHH-HhhhccccCHHhhhhh
Q psy14319        153 ASTQWMERTLDDSANRRLTLSESFLTTDCLLITLQ-NVLEGLVVYPKETYSI  203 (486)
Q Consensus       153 ~~~~~~erDl~~~~~~~~~l~~a~~~~~~~l~~~~-~vl~~l~vn~erm~~~  203 (486)
                      +++.+|+++.+...   ..+++++..+..++..+. .++++|+||++||++.
T Consensus       355 ~~~~~~~~~~~~~~---~~~~~~~~~~~~~l~~~~~~~l~~l~v~~erm~~~  403 (472)
T PRK12273        355 AGQLELNVMEPVIA---YNLFESISILTNACRTLREKCIDGITANEERCREY  403 (472)
T ss_pred             cCCchhhhhhhhhH---HHHHHHHHHHHHHHHHHHHHHHccCEECHHHHHHH
Confidence            57778777654432   445667999999999999 5999999999999983

>cd01359 Argininosuccinate_lyase Argininosuccinate lyase (argininosuccinase, ASAL)

Probab=99.97  E-value=8.7e-31  Score=278.07  Aligned_cols=208  Identities=19%  Similarity=0.209  Sum_probs=175.6

Q ss_pred             hhhhhHhccHHHHHHHHHHHhh-hcCCCceeecccCcccccchhhhhhhhhhhhHHHHHHcCCCCCCCcc-cccccccHH
Q psy14319          2 KFYKYVLGDGDKVKALDRLVTK-KAGFNSSHIITGQTYSRKVDVIVTGVLSSLGASIHKKAGFNSSHIIT-GQTYSRKVD   79 (486)
Q Consensus         2 ~~~~~~~~d~~r~~~~~~~~~~-~~g~~~~~a~~g~~~~r~~d~~~~Gt~a~~~~~~a~~LGf~~~~~~~-~av~~RD~~   79 (486)
                      +|.+.|.||.+|+.++.++++. ++|   .++.+|+.++  +|+          +++|++|||..+..+| +++.+||++
T Consensus       149 ~~~~~l~r~~~rL~~~~~~~~~~~lG---gaag~gt~~~--~~~----------~~~a~~LG~~~~~~~~~~a~~~rd~~  213 (435)
T cd01359         149 AYAEMLERDLERLADAYKRVNVSPLG---AGALAGTTFP--IDR----------ERTAELLGFDGPTENSLDAVSDRDFV  213 (435)
T ss_pred             HHHHHHHHHHHHHHHHHHHhCcCCcc---cccccCCCCC--CCH----------HHHHHHcCCCCCccCHHHHHhcchHH
Confidence            6899999999999999999984 355   5777899996  774          6899999999888777 888999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHh--ccccccccccCCCCCccCCCCCCchHHHHHHHHHHHHHHHHHHHHHhh--cc
Q psy14319         80 VIVTGVLSSLGASIHKLATDLRLLAH--MKEIEEPFESTQIGSSAMAYKRNPMRSERLCSLARFLMSLHQNSLATA--ST  155 (486)
Q Consensus        80 ~e~~~~la~la~~LsRlA~DL~l~ss--~~el~e~~~~~~~GSSiMPqKrNP~~~E~ir~~a~~v~g~~~~~l~~~--~~  155 (486)
                      ++++++++.++++++|||+|+++|++  |+||..|. ...+|||||||||||+.+|+++++++++.|....++...  .+
T Consensus       214 ~e~~~~l~~~a~~l~ria~Dl~l~~~~e~gev~lpe-~~~~GSS~MP~KrNP~~~E~i~~~a~~~~g~~~~~~~~~~~~~  292 (435)
T cd01359         214 LEFLSAAALLMVHLSRLAEDLILWSTQEFGFVELPD-AYSTGSSIMPQKKNPDVLELIRGKAGRVIGALAGLLTTLKGLP  292 (435)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHcCCCCCeeeCCC-CCCCccccCCCCCCCcHHHHHHHHHHHHhhHHhHHHHHhcCCC
Confidence            99999999999999999999999996  99987543 234799999999999999999999999999998755432  27


Q ss_pred             ccccCCCchhhHhhhchHHHHHHHHHHHHHHHHhhhccccCHHhhhhhhcCCCCCCcccccccccCCCCCCCcHHHHHHH
Q psy14319        156 QWMERTLDDSANRRLTLSESFLTTDCLLITLQNVLEGLVVYPKETYSIRIIPDNRLSSHHTTKRSGRPGDGDKVKALDRL  235 (486)
Q Consensus       156 ~~~erDl~~~~~~~~~l~~a~~~~~~~l~~~~~vl~~l~vn~erm~~~~~~~~~~g~~~~~~~~~~~~~~g~~~~~i~~~  235 (486)
                      .+|+||.+.   +|..+++++..+..++..+..++++|+||+++|++..                  ...+...+.+...
T Consensus       293 ~~~~~d~~~---~~~~l~~~~~~~~~al~~~~~~l~~l~v~~~~m~~~l------------------~~~~~~a~~l~~~  351 (435)
T cd01359         293 LAYNKDLQE---DKEPLFDAVDTLIASLRLLTGVISTLTVNPERMREAA------------------EAGFSTATDLADY  351 (435)
T ss_pred             CccchhHHH---hhHHHHHHHHHHHHHHHHHHHHHhhCEECHHHHHHHH------------------hcCccHHHHHHHH
Confidence            889999876   5789999999999999999999999999999999832                  1222345777777


Q ss_pred             HHH--HcCCCCCc
Q psy14319        236 VTK--KAGFTSSH  246 (486)
Q Consensus       236 lA~--~LGf~~a~  246 (486)
                      +++  .+||+.+|
T Consensus       352 l~~~~g~~~r~Ah  364 (435)
T cd01359         352 LVREKGVPFREAH  364 (435)
T ss_pred             HHHhcCCCHHHHH
Confidence            766  47777654

This group contains ASAL and related proteins. It is a member of the Lyase class I family. Members of this family for the most part catalyze similar beta-elimination reactions in which a C-N or C-O bond is cleaved with the release of fumarate as one of the products. These proteins are active as tetramers. The four active sites of the homotetrameric enzyme are each formed by residues from three different subunits. ASAL is a cytosolic enzyme which catalyzes the reversible breakdown of argininosuccinate to arginine and fumarate during arginine biosynthesis. In ureotelic species ASAL also catalyzes a reaction involved in the production of urea. Included in this group are the major soluble avian eye lens proteins from duck, delta 1 and delta 2 crystallin. Of these two isoforms only delta 2 has retained ASAL activity. These crystallins may have evolved by, gene recruitment of ASAL followed by gene duplication.

>KOG2700|consensus

Probab=99.97  E-value=3.2e-29  Score=255.42  Aligned_cols=215  Identities=60%  Similarity=0.795  Sum_probs=201.9

Q ss_pred             hcCCCCCCcccccccccCCCCCCCcHHHHHHHHHHHcCCCCCccccccccCccHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy14319        204 RIIPDNRLSSHHTTKRSGRPGDGDKVKALDRLVTKKAGFTSSHIITGQTYSRKVDVIVTGVLSSLGASIHKLATDLRLLA  283 (486)
Q Consensus       204 ~~~~~~~g~~~~~~~~~~~~~~g~~~~~i~~~lA~~LGf~~a~~~~~~~~~rd~~~e~~~~l~~~~~~l~rla~Dl~l~s  283 (486)
                      ++++|..|+-.  ...+.+.++.++....-+.+++.+||..+....+++++||...+++..+++++++..|+|+||+++.
T Consensus       193 ~~~kga~gtqa--sf~~l~~~~~~kv~~ld~Lv~k~~gf~~~~~~TGQt~sr~~~~~~~~~la~lgat~~k~~Tdirll~  270 (481)
T KOG2700|consen  193 RGLKGATGTQA--SFLSLFLGDMDKVEKLDSLVTKELGFVPMYIVTGQTYSRKTDAEEVAPLASLGATAHKYATDIRLLA  270 (481)
T ss_pred             cccccchhhHH--HHHHhhcccHHHHHHHHHHHHHHhCCCccccccCCcCCchhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            45788888853  4677888888888888889999999998876678999999999999999999999999999999999


Q ss_pred             hhhhccccccCCCCcCcCCCCCCCchHHHHHHHHHHHHHHHhHHHHHHhhhhHhhhcccccCCCCCCccccchhhhhhcc
Q psy14319        284 HMKEIEEPFESTQIGSSAMAYKRNPMRSERLCSLARFLMSLHQNSLATASTQWMERTLDDSANRFPTKSVFSCVTQVKQH  363 (486)
Q Consensus       284 s~~el~~~~~~~~~GSSiMPqKrNP~~~E~~~~~a~~~~g~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~  363 (486)
                      .|+|+.|||.+.+.|||.||+||||+.+|+++++++.+..+.+..+.+++.+|+||.+++|+++                
T Consensus       271 ~~~ev~epFea~q~gsSaMp~krNpm~~E~itslar~l~~~v~~al~~~~~qw~Ertl~dSa~~----------------  334 (481)
T KOG2700|consen  271 KFAEVEEPFEAHQIGSSAMPYKRNPMRCERITSLARHLRPYVTQALNTASVQWHERTLDDSANR----------------  334 (481)
T ss_pred             HHHHhhccccccccccccCCCCCCCchhHHHhHHHHHHHHHHHHHhhhHHHHHhhccccccccc----------------
Confidence            9999999999999999999999999999999999999999999999988999999999998865                


Q ss_pred             CCcchhhhhhccCCCCccccccCCCCCCCccccCCchhHhhhhhhcccchHHHHHHHHHHHHHHHhchhCCeeCHHHHHH
Q psy14319        364 GKENDLVDRIRADPYFAPILNQMPTLLDPKSFYGRAPEQQRLSAKGIHTLSESFLTTDCLLITLQNVLEGLVVYPKVIQR  443 (486)
Q Consensus       364 g~~~d~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~q~~~~~~~~~~l~~~~~~~~~~l~~~~~~l~~l~v~~~~m~~  443 (486)
                                                                    |..+|+.|..+++.|....+++.|+.|.|++|.+
T Consensus       335 ----------------------------------------------rivlP~~Fl~ad~~L~~~~ni~~gl~v~p~~i~r  368 (481)
T KOG2700|consen  335 ----------------------------------------------RIVLPDAFLTADGNLGTLLNILEGLVVYPKVIER  368 (481)
T ss_pred             ----------------------------------------------ceechHHHHHHHHHHHHHHHHHhhcccccHHHHH
Confidence                                                          3489999999999999999999999999999999


Q ss_pred             HHhccCChhHHHHHHHHHHHcCCChHHHHHHHHHHHHHh
Q psy14319        444 HIDQELPFMATENIIMAMVKAGGDRQVCHEKIRVLSHQA  482 (486)
Q Consensus       444 ~l~~~~~~~~a~~~~~~L~~~g~~fr~Ah~~v~~~~~~a  482 (486)
                      ++....+|+.+|+++++|+++|+++++||+.|+.+..++
T Consensus       369 ~i~~e~~~~~~eni~mAL~~~g~srq~ahe~I~~L~~~a  407 (481)
T KOG2700|consen  369 NIRDELPFMVLENIIMALVKAGLSRQEAHEGIRKLSHQA  407 (481)
T ss_pred             HHHhhhhHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHH
Confidence            999999999999999999999999999999999999987

>PLN02848 adenylosuccinate lyase

Probab=99.97  E-value=3.7e-30  Score=273.23  Aligned_cols=187  Identities=16%  Similarity=0.080  Sum_probs=167.3

Q ss_pred             cHHHHHHHHHHHcCCCCCccccccccCccHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhccccccCCCCcCcCCCCCCC
Q psy14319        228 KVKALDRLVTKKAGFTSSHIITGQTYSRKVDVIVTGVLSSLGASIHKLATDLRLLAHMKEIEEPFESTQIGSSAMAYKRN  307 (486)
Q Consensus       228 ~~~~i~~~lA~~LGf~~a~~~~~~~~~rd~~~e~~~~l~~~~~~l~rla~Dl~l~ss~~el~~~~~~~~~GSSiMPqKrN  307 (486)
                      +++.+.+.+++.|||... +...++++||+++|++++++.++++++|||+||+.++++||+.|++.++++||||||||||
T Consensus       228 d~~~v~~~la~~LGL~~~-~~~~~v~~rD~~~e~~~~La~~a~~l~kia~Di~~~~e~ge~~e~~~~~~~GSS~MP~KrN  306 (458)
T PLN02848        228 DWPAVAEEFVTSLGLTFN-PYVTQIEPHDYMAELFNAVSRFNNILIDFDRDIWSYISLGYFKQITKAGEVGSSTMPHKVN  306 (458)
T ss_pred             CHHHHHHHHHHHhCCCCC-CchhhHhccHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCcccccCCCCCCcCCCCCCcC
Confidence            357889999999999852 2334689999999999999999999999999999888899999888888999999999999


Q ss_pred             chHHHHHHHHHHHHHHHhHHHHHHhhhhHhhhcccccCCCCCCccccchhhhhhccCCcchhhhhhccCCCCccccccCC
Q psy14319        308 PMRSERLCSLARFLMSLHQNSLATASTQWMERTLDDSANRFPTKSVFSCVTQVKQHGKENDLVDRIRADPYFAPILNQMP  387 (486)
Q Consensus       308 P~~~E~~~~~a~~~~g~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~g~~~d~~~~~~~~~~~~~~~~~~~  387 (486)
                      |+.+|+++++++.+.|....++.....+|+|||+++|.+                                         
T Consensus       307 Pv~~E~i~~~a~~~~~~~~~~~~~~~~~~~eRD~~~s~~-----------------------------------------  345 (458)
T PLN02848        307 PIDFENSEGNLGLANAELSHLSMKLPISRMQRDLTDSTV-----------------------------------------  345 (458)
T ss_pred             cHHHHHHHHHHHHHHHHHHHHHhcCcchhhccccchhhh-----------------------------------------
Confidence            999999999999999999999876577899999987643                                         


Q ss_pred             CCCCCccccCCchhHhhhhhhcccchHHHHHHHHHHHHHHHhchhCCeeCHHHHHHHHhccCChhHHHHHHHHHHHcCCC
Q psy14319        388 TLLDPKSFYGRAPEQQRLSAKGIHTLSESFLTTDCLLITLQNVLEGLVVYPKVIQRHIDQELPFMATENIIMAMVKAGGD  467 (486)
Q Consensus       388 ~~~~p~~~~~~~~~q~~~~~~~~~~l~~~~~~~~~~l~~~~~~l~~l~v~~~~m~~~l~~~~~~~~a~~~~~~L~~~g~~  467 (486)
                                           +|.. ++++..+..++..+..++++|+||++||++|++.++++ ++|.+++.|++  ++
T Consensus       346 ---------------------e~~~-~~~~~~~~~al~~~~~~l~~L~v~~~rm~~nl~~~~~~-~sE~~~~~l~~--~G  400 (458)
T PLN02848        346 ---------------------LRNM-GVGLGHSLLAYKSTLRGIGKLQVNEARLAEDLDQTWEV-LAEPIQTVMRR--YG  400 (458)
T ss_pred             ---------------------hccH-HHHHHHHHHHHHHHHHHHccCEECHHHHHHHHHccchh-HHHHHHHHHHH--hC
Confidence                                 2445 89999999999999999999999999999999999997 89999988888  66


Q ss_pred             hHHHHHHHHHHHHH
Q psy14319        468 RQVCHEKIRVLSHQ  481 (486)
Q Consensus       468 fr~Ah~~v~~~~~~  481 (486)
                      +.+||++|+++++.
T Consensus       401 ~~~A~e~v~~~~~~  414 (458)
T PLN02848        401 VPEPYEKLKELTRG  414 (458)
T ss_pred             hHHHHHHHHHHHHH
Confidence            89999999999864

>COG0015 PurB Adenylosuccinate lyase [Nucleotide transport and metabolism]

Probab=99.97  E-value=2.4e-30  Score=269.86  Aligned_cols=182  Identities=34%  Similarity=0.504  Sum_probs=159.6

Q ss_pred             hhhhhHhccHHHHHHHHHHHhhhcCCCceeecccCcccccchhhhhhhhhhhh-------HHHHHHcCCCCCCCcccccc
Q psy14319          2 KFYKYVLGDGDKVKALDRLVTKKAGFNSSHIITGQTYSRKVDVIVTGVLSSLG-------ASIHKKAGFNSSHIITGQTY   74 (486)
Q Consensus         2 ~~~~~~~~d~~r~~~~~~~~~~~~g~~~~~a~~g~~~~r~~d~~~~Gt~a~~~-------~~~a~~LGf~~~~~~~~av~   74 (486)
                      .|+.-+.|+.+|+.++.+++.- -+++|  |              +||+|+++       +++++.|||..++.+. ++.
T Consensus       160 ~w~~el~R~~~rL~~~~~~~~~-g~i~G--a--------------~Gt~Aa~~~~~~~ve~~v~e~LGL~~~p~st-q~~  221 (438)
T COG0015         160 NWLAELLRHLERLEEAEERIIV-GKIGG--A--------------VGTLAALGDLGAEVEERVAEKLGLKPAPIST-QVS  221 (438)
T ss_pred             HHHHHHHHHHHHHHHHHhhhhh-hcccc--c--------------hhhHhhcCchhHHHHHHHHHHcCCCCCCCCc-ccc
Confidence            3778899999999999997531 12211  1              23334443       4999999999877544 888


Q ss_pred             cccHHHHHHHHHHHHHHHHHHHHHHHHHHHh--ccccccccccCCCCCccCCCCCCchHHHHHHHHHHHHHHHHHHHHHh
Q psy14319         75 SRKVDVIVTGVLSSLGASIHKLATDLRLLAH--MKEIEEPFESTQIGSSAMAYKRNPMRSERLCSLARFLMSLHQNSLAT  152 (486)
Q Consensus        75 ~RD~~~e~~~~la~la~~LsRlA~DL~l~ss--~~el~e~~~~~~~GSSiMPqKrNP~~~E~ir~~a~~v~g~~~~~l~~  152 (486)
                      +||+++|++++|+.+++++.|||.||++|++  ++|+.|||.++|+|||+||||+||+.+|++.++++.+.+.....+ .
T Consensus       222 ~RD~~ae~~~~La~i~~sl~k~a~dIr~l~~~e~~Ev~E~f~~gq~GSSaMPHKrNPi~~E~~~glar~~r~~~~~~~-e  300 (438)
T COG0015         222 PRDRIAEFFSALALLAGSLEKFARDIRLLQRTEVGEVEEPFAKGQVGSSAMPHKRNPIDSENVTGLARVARALVSTLL-E  300 (438)
T ss_pred             cchHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccccccCCCCCCCCCCCcccCcHHHHHHHHHHHHHHHHHHHHH-H
Confidence            9999999999999999999999999999996  999999999999999999999999999999999999999988644 4


Q ss_pred             hccccccCCCchhhHhhhchHHHHHHHHHHHHHHHHhhhccccCHHhhhh
Q psy14319        153 ASTQWMERTLDDSANRRLTLSESFLTTDCLLITLQNVLEGLVVYPKETYS  202 (486)
Q Consensus       153 ~~~~~~erDl~~~~~~~~~l~~a~~~~~~~l~~~~~vl~~l~vn~erm~~  202 (486)
                      ++++|+|||+.+|..+|..+|+++.+++.+|..+..++++|.||+++|++
T Consensus       301 ~~~~whERdlt~ssver~~Lp~~~~~~~~aL~~~~~vl~~L~v~~~~m~~  350 (438)
T COG0015         301 NLVLWHERDLTDSSVERVILPDAFIAADGALNRLLNVLEGLEVNPERMRR  350 (438)
T ss_pred             HhHHHHhccccchHHHHHHHHHHHHHHHHHHHHHHHHHHhCeeCHHHHHH
Confidence            56999999999999999999999999999999999999999999999998

>PRK12425 fumarate hydratase; Provisional

Probab=99.97  E-value=4.5e-30  Score=273.35  Aligned_cols=187  Identities=22%  Similarity=0.176  Sum_probs=151.4

Q ss_pred             hhhhhHhccHHHHHHHHHHHhhh-cCCCceeecccCcccccchhhhhhhhhhhhHHHHHHcCCCCC--CCcccccccccH
Q psy14319          2 KFYKYVLGDGDKVKALDRLVTKK-AGFNSSHIITGQTYSRKVDVIVTGVLSSLGASIHKKAGFNSS--HIITGQTYSRKV   78 (486)
Q Consensus         2 ~~~~~~~~d~~r~~~~~~~~~~~-~g~~~~~a~~g~~~~r~~d~~~~Gt~a~~~~~~a~~LGf~~~--~~~~~av~~RD~   78 (486)
                      +|+++|.||.+|++++.++++.. +|   ++|+ |+.++  +|+..   -......++++|||..+  .++.|++++||+
T Consensus       201 a~~~~l~rd~~RL~~~~~r~~~~plG---ggAv-GT~~~--~~~~~---~~~~~~~La~~LG~~~~~~~n~~da~~~rD~  271 (464)
T PRK12425        201 AFVAQLDYAERAIRAALPAVCELAQG---GTAV-GTGLN--APHGF---AEAIAAELAALSGLPFVTAPNKFAALAGHEP  271 (464)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhcCC---Cchh-cCccc--CCccH---HHHHHHHHHHHhCCCCcccccHHHHhcccHH
Confidence            79999999999999999999864 66   6888 88885  65310   01123467888899986  356699999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHH---h--ccccccccccCCCCCccCCCCCCchHHHHHHHHHHHHHHHHHHHHHhh
Q psy14319         79 DVIVTGVLSSLGASIHKLATDLRLLA---H--MKEIEEPFESTQIGSSAMAYKRNPMRSERLCSLARFLMSLHQNSLATA  153 (486)
Q Consensus        79 ~~e~~~~la~la~~LsRlA~DL~l~s---s--~~el~e~~~~~~~GSSiMPqKrNP~~~E~ir~~a~~v~g~~~~~l~~~  153 (486)
                      ++|+++++++++++|+|||+||++|+   +  |+|+.+|+  .++|||||||||||+.+|.+|++|+++.|+..+++...
T Consensus       272 ~~e~~~~l~~la~~L~kia~Dl~llsS~p~~g~~ei~lp~--~~~GSSiMPqK~NP~~~E~i~~~a~~v~G~~~~v~~~~  349 (464)
T PRK12425        272 LVSLSGALKTLAVALMKIANDLRLLGSGPRAGLAEVRLPA--NEPGSSIMPGKVNPTQCEALSMLACQVMGNDATIGFAA  349 (464)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHccCccCCceEEECCC--CCCCCCCCCCCcCCHHHHHHHHHHHHHHhHHHHHHHHH
Confidence            99999999999999999999999999   4  88999985  38999999999999999999999999999998766443


Q ss_pred             ccccccCCCchhhH----hhhchHHHHHHHHHHHHHHHHhhhccccCHHhhhhh
Q psy14319        154 STQWMERTLDDSAN----RRLTLSESFLTTDCLLITLQNVLEGLVVYPKETYSI  203 (486)
Q Consensus       154 ~~~~~erDl~~~~~----~~~~l~~a~~~~~~~l~~~~~vl~~l~vn~erm~~~  203 (486)
                      ..    ++++....    ....++++..+...++.++..|+++|+||++||++.
T Consensus       350 ~~----~~~q~n~~~~~~~~~~l~s~~~l~~~~~~~~~~~i~~l~vn~erm~~~  399 (464)
T PRK12425        350 SQ----GHLQLNVFKPVIIHNLLQSIRLLADGCRNFQQHCVAGLEPDAEQMAAH  399 (464)
T ss_pred             hc----CCchhhhcchHHHHHHHHHHHHHHHHHHHHHHHHHccCEECHHHHHHH
Confidence            32    33333211    123455666667799999999999999999999984

>cd01357 Aspartase Aspartase

Probab=99.97  E-value=9.4e-30  Score=270.47  Aligned_cols=189  Identities=20%  Similarity=0.197  Sum_probs=156.2

Q ss_pred             hhhhhHhccHHHHHHHHHHHhhhcCCCceeecccCcccccchhhhhhhhhhhhHHHHHHcCCCCC--CCcccccccccHH
Q psy14319          2 KFYKYVLGDGDKVKALDRLVTKKAGFNSSHIITGQTYSRKVDVIVTGVLSSLGASIHKKAGFNSS--HIITGQTYSRKVD   79 (486)
Q Consensus         2 ~~~~~~~~d~~r~~~~~~~~~~~~g~~~~~a~~g~~~~r~~d~~~~Gt~a~~~~~~a~~LGf~~~--~~~~~av~~RD~~   79 (486)
                      +|++.|.||.+|+.++.++++.. ++| ++|+ |+.++  +|+.-   -.....++|++|||..+  .++.+++++||++
T Consensus       198 ~~~~~l~r~~~rL~~~~~~~~~~-pLG-g~Av-Gt~~~--~~~~~---~~~v~~~~a~~LGl~~~~~~n~~~a~~~rd~~  269 (450)
T cd01357         198 AYATALKRDRARIYKARERLREV-NLG-GTAI-GTGIN--APPGY---IELVVEKLSEITGLPLKRAENLIDATQNTDAF  269 (450)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHh-CCC-CCce-eCCCC--CChhH---HHHHHHHHHHHhCCCCccCcCHHHHHhccHHH
Confidence            68999999999999999999853 442 3466 88775  66410   01234579999999963  3456899999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHh-----ccccccccccCCCCCccCCCCCCchHHHHHHHHHHHHHHHHHHHHH--h
Q psy14319         80 VIVTGVLSSLGASIHKLATDLRLLAH-----MKEIEEPFESTQIGSSAMAYKRNPMRSERLCSLARFLMSLHQNSLA--T  152 (486)
Q Consensus        80 ~e~~~~la~la~~LsRlA~DL~l~ss-----~~el~e~~~~~~~GSSiMPqKrNP~~~E~ir~~a~~v~g~~~~~l~--~  152 (486)
                      ++++++++.++++|+|||+|+++|++     |+||.+|+  +++|||||||||||+.+|++|++|+++.|+..++++  .
T Consensus       270 ~e~~~~l~~~a~~L~riA~Di~l~ss~e~~~~gev~~p~--~~~GSSiMPqKrNP~~~E~ir~~a~~v~g~~~~~~~~~~  347 (450)
T cd01357         270 VEVSGALKRLAVKLSKIANDLRLLSSGPRAGLGEINLPA--VQPGSSIMPGKVNPVIPEVVNQVAFQVIGNDLTITMAAE  347 (450)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhcCCcCCceeEECCC--CCCcCCCCCCCcCcHHHHHHHHHHHHHhhHHHHHHHHHh
Confidence            99999999999999999999999993     99999984  789999999999999999999999999999987645  5


Q ss_pred             hccccccCCCchhhHhhhchHHHHHHHHHHHHHH-HHhhhccccCHHhhhhh
Q psy14319        153 ASTQWMERTLDDSANRRLTLSESFLTTDCLLITL-QNVLEGLVVYPKETYSI  203 (486)
Q Consensus       153 ~~~~~~erDl~~~~~~~~~l~~a~~~~~~~l~~~-~~vl~~l~vn~erm~~~  203 (486)
                      +++.+|+++.+...   ..++++++.+..++..+ ..++++|+||++||++.
T Consensus       348 ~~~~~~~~~~~~~~---~~~~~~~~~~~~~l~~~~~~~l~~l~v~~erm~~~  396 (450)
T cd01357         348 AGQLELNVFEPVIA---YNLLESIDILTNAVRTLRERCIDGITANEERCREY  396 (450)
T ss_pred             cCcchhhcchHHHH---HHHHHHHHHHHHHHHHHHHHHHccCEECHHHHHHH
Confidence            67778777654332   34556666999999999 49999999999999983

This subgroup contains Escherichia coli aspartase (L-aspartate ammonia-lyase), Bacillus aspartase and related proteins. It is a member of the Lyase class I family, which includes both aspartase (L-aspartate ammonia-lyase) and fumarase class II enzymes. Members of this family for the most part catalyze similar beta-elimination reactions in which a C-N or C-O bond is cleaved with the release of fumarate as one of the products. These proteins are active as tetramers. The four active sites of the homotetrameric enzyme are each formed by residues from three different subunits. Aspartase catalyzes the reversible deamination of aspartic acid.

>TIGR02426 protocat_pcaB 3-carboxy-cis,cis-muconate cycloisomerase

Probab=99.97  E-value=1.2e-29  Score=260.77  Aligned_cols=176  Identities=26%  Similarity=0.240  Sum_probs=153.0

Q ss_pred             hhhhhHhccHHHHHHHHHHHhhhcCCCceeecccCcccccchhhhhhhhhhhhHHHHHHcCCCCCCCcccccccccHHHH
Q psy14319          2 KFYKYVLGDGDKVKALDRLVTKKAGFNSSHIITGQTYSRKVDVIVTGVLSSLGASIHKKAGFNSSHIITGQTYSRKVDVI   81 (486)
Q Consensus         2 ~~~~~~~~d~~r~~~~~~~~~~~~g~~~~~a~~g~~~~r~~d~~~~Gt~a~~~~~~a~~LGf~~~~~~~~av~~RD~~~e   81 (486)
                      +|++.|.||.+|+.++.++++. .++|| .+.+|+.+++. +       -.+..+++++|||..|..+|  +++||+++|
T Consensus       161 ~~~~~l~r~~~rL~~~~~~~~~-~~lGg-avGtg~~~~~~-~-------~~v~~~~a~~LGl~~~~~~~--~~~rd~~~e  228 (338)
T TIGR02426       161 GWLAAVLRARDRLAALRTRALP-LQFGG-AAGTLAALGTR-G-------GAVAAALAARLGLPLPALPW--HTQRDRIAE  228 (338)
T ss_pred             HHHHHHHHHHHHHHHHHHHhHh-cCCcc-hhccCCCccch-H-------HHHHHHHHHHhCcCCCCCcc--hhhhHHHHH
Confidence            6899999999999999999974 35534 45566555311 0       12357999999999987665  479999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHh--ccccccccccCCCCCccCCCCCCchHHHHHHHHHHHHHHHHHHHHHhhcccccc
Q psy14319         82 VTGVLSSLGASIHKLATDLRLLAH--MKEIEEPFESTQIGSSAMAYKRNPMRSERLCSLARFLMSLHQNSLATASTQWME  159 (486)
Q Consensus        82 ~~~~la~la~~LsRlA~DL~l~ss--~~el~e~~~~~~~GSSiMPqKrNP~~~E~ir~~a~~v~g~~~~~l~~~~~~~~e  159 (486)
                      ++++++.++++++|||+||++|++  |+|+.+++   ++|||||||||||+.+|+++++|+++.|.... ++..+++++|
T Consensus       229 ~~~~l~~la~~l~ria~Dl~l~s~~e~gei~~~~---~~GSSiMPqK~NP~~~E~i~~~a~~~~g~~~~-~~~~~~~~~E  304 (338)
T TIGR02426       229 FGSALALVAGALGKIAGDIALLSQTEVGEVFEAG---GGGSSAMPHKRNPVGAALLAAAARRVPGLAAT-LHAALPQEHE  304 (338)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhcCCCChhhhCC---CCCcccCCCCCCcHHHHHHHHHHHHHHHHHHH-HHHhchHhhc
Confidence            999999999999999999999995  99998855   58999999999999999999999999999986 4566899999


Q ss_pred             CCCchhhHhhhchHHHHHHHHHHHHHHHHhhhcc
Q psy14319        160 RTLDDSANRRLTLSESFLTTDCLLITLQNVLEGL  193 (486)
Q Consensus       160 rDl~~~~~~~~~l~~a~~~~~~~l~~~~~vl~~l  193 (486)
                      ||...|..+|..+|+++.+++.++..+..++++|
T Consensus       305 r~~~~~~~e~~~lp~~~~~~~~~l~~~~~~l~~l  338 (338)
T TIGR02426       305 RSLGGWHAEWETLPELVRLTGGALRQAQVLAEGL  338 (338)
T ss_pred             cCCCchHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence            9999999999999999999999999999999875

Members of this family are 3-carboxy-cis,cis-muconate cycloisomerase, the enzyme the catalyzes the second step in the protocatechuate degradation to beta-ketoadipate and then to succinyl-CoA and acetyl-CoA. 4-hydroxybenzoate, 3-hydroxybenzoate, and vanillate all can be converted in one step to protocatechuate. All members of the seed alignment for this model were chosen from within protocatechuate degradation operons of at least three genes of the pathway, from genomes with the complete pathway through beta-ketoadipate.

>PRK00485 fumC fumarate hydratase; Reviewed

Probab=99.96  E-value=2.1e-29  Score=268.81  Aligned_cols=180  Identities=19%  Similarity=0.178  Sum_probs=153.7

Q ss_pred             HHHHHHHHHHHcCCC-CCc-cccccccCccHHHHHHHHHHHHHHHHHHHHHHHHHHhh-----hhhccccccCCCCcCcC
Q psy14319        229 VKALDRLVTKKAGFT-SSH-IITGQTYSRKVDVIVTGVLSSLGASIHKLATDLRLLAH-----MKEIEEPFESTQIGSSA  301 (486)
Q Consensus       229 ~~~i~~~lA~~LGf~-~a~-~~~~~~~~rd~~~e~~~~l~~~~~~l~rla~Dl~l~ss-----~~el~~~~~~~~~GSSi  301 (486)
                      +..+.+++++.|||. .+. |..+++++||+++|++++++.++++|+|||+||++|+|     ||||.+|+  .++||||
T Consensus       243 ~~~v~~~~A~~LGl~~~~~~n~~da~~~rD~~~e~~~~la~la~~L~ria~Dl~l~ss~~~~e~gev~lp~--~~~GSSi  320 (464)
T PRK00485        243 AERVAEELAELTGLPFVTAPNKFEALAAHDALVEASGALKTLAVSLMKIANDIRWLASGPRCGLGEISLPE--NEPGSSI  320 (464)
T ss_pred             HHHHHHHHHHHhCCCCccCcCHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCccCCCceEEcCC--CCCCCCC
Confidence            578888999999999 433 45667899999999999999999999999999999994     99999986  4799999


Q ss_pred             CCCCCCchHHHHHHHHHHHHHHHhHHHHHHhhhhHhhhcccccCCCCCCccccchhhhhhccCCcchhhhhhccCCCCcc
Q psy14319        302 MAYKRNPMRSERLCSLARFLMSLHQNSLATASTQWMERTLDDSANRFPTKSVFSCVTQVKQHGKENDLVDRIRADPYFAP  381 (486)
Q Consensus       302 MPqKrNP~~~E~~~~~a~~~~g~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~g~~~d~~~~~~~~~~~~~  381 (486)
                      |||||||+.+|+++++|+++.|.+.+++..+...++||+...|                                     
T Consensus       321 MPqKrNP~~~E~ir~~a~~v~g~~~~~~~~~~~~~~e~~~~~~-------------------------------------  363 (464)
T PRK00485        321 MPGKVNPTQCEALTMVCAQVMGNDAAVTFAGSQGNFELNVFKP-------------------------------------  363 (464)
T ss_pred             CCCCCCcHHHHHHHHHHHHHhhhHHHHHHHhccCcccccccCh-------------------------------------
Confidence            9999999999999999999999999999777788888875321                                     


Q ss_pred             ccccCCCCCCCccccCCchhHhhhhhhcccchHHHHHHHHHHHHHHHhchhCCeeCHHHHHHHHhccCChhHHHHHHHHH
Q psy14319        382 ILNQMPTLLDPKSFYGRAPEQQRLSAKGIHTLSESFLTTDCLLITLQNVLEGLVVYPKVIQRHIDQELPFMATENIIMAM  461 (486)
Q Consensus       382 ~~~~~~~~~~p~~~~~~~~~q~~~~~~~~~~l~~~~~~~~~~l~~~~~~l~~l~v~~~~m~~~l~~~~~~~~a~~~~~~L  461 (486)
                                               .-+|..+++++.+...++.+...++++|+||++||+++++.+.+  +    +..|
T Consensus       364 -------------------------~~~~~~~~~~~~l~~~~~~~~~~~l~~l~v~~erm~~~l~~~~~--~----~t~L  412 (464)
T PRK00485        364 -------------------------VIAYNFLQSIRLLADAMRSFADHCVVGIEPNRERIKELLERSLM--L----VTAL  412 (464)
T ss_pred             -------------------------HHHHHHHHHHHHHHHHHHHHHHHHHccCEECHHHHHHHHHhCCe--e----HHHh
Confidence                                     01467888999999898888889999999999999999988765  3    3455


Q ss_pred             HHcCCChHHHHHHHHHHH
Q psy14319        462 VKAGGDRQVCHEKIRVLS  479 (486)
Q Consensus       462 ~~~g~~fr~Ah~~v~~~~  479 (486)
                      ++. +||++||+++.++.
T Consensus       413 a~~-lg~~~A~~~~~~a~  429 (464)
T PRK00485        413 NPH-IGYDKAAKIAKKAH  429 (464)
T ss_pred             ccc-cCHHHHHHHHHHHH
Confidence            555 99999999666553

>PRK13353 aspartate ammonia-lyase; Provisional

Probab=99.96  E-value=3.1e-29  Score=267.92  Aligned_cols=189  Identities=19%  Similarity=0.194  Sum_probs=150.6

Q ss_pred             hhhhhHhccHHHHHHHHHHHhhhcCCCceeecccCcccccchhhhhhhhhhhhHHHHHHcCCCCC--CCcccccccccHH
Q psy14319          2 KFYKYVLGDGDKVKALDRLVTKKAGFNSSHIITGQTYSRKVDVIVTGVLSSLGASIHKKAGFNSS--HIITGQTYSRKVD   79 (486)
Q Consensus         2 ~~~~~~~~d~~r~~~~~~~~~~~~g~~~~~a~~g~~~~r~~d~~~~Gt~a~~~~~~a~~LGf~~~--~~~~~av~~RD~~   79 (486)
                      +|++.|.||.+|+.++.++++.+ ++| .+|+ |+.++  +|+.   -.+.+..+++++|||+.+  .++++++++||++
T Consensus       203 ~~~~~l~r~~~rL~~~~~~~~~~-pLG-g~Av-GT~~~--~~~~---~~~~~~~~la~~LG~~~~~~~n~~~a~~~rD~~  274 (473)
T PRK13353        203 AYARALKRDRKRIQQAREHLYEV-NLG-GTAV-GTGLN--ADPE---YIERVVKHLAAITGLPLVGAEDLVDATQNTDAF  274 (473)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhhh-CCC-Cccc-cCCcc--CChh---HHHHHHHHHHHHhCCCCccccchHhhhcccHHH
Confidence            69999999999999999999853 442 3466 88886  7752   112334578999999953  3567999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHH-----hccccccccccCCCCCccCCCCCCchHHHHHHHHHHHHHHHHHHHHH--h
Q psy14319         80 VIVTGVLSSLGASIHKLATDLRLLA-----HMKEIEEPFESTQIGSSAMAYKRNPMRSERLCSLARFLMSLHQNSLA--T  152 (486)
Q Consensus        80 ~e~~~~la~la~~LsRlA~DL~l~s-----s~~el~e~~~~~~~GSSiMPqKrNP~~~E~ir~~a~~v~g~~~~~l~--~  152 (486)
                      ++++++++.++++|+|||+||++|+     +|+||.+|+  +++|||||||||||+.+|++|++|+++.|+...++.  .
T Consensus       275 ~e~~~~la~la~~l~riA~Dl~llss~pr~e~gev~lp~--~~~GSSiMPqKrNP~~~E~ir~~a~~v~g~~~~~~~~~~  352 (473)
T PRK13353        275 VEVSGALKVCAVNLSKIANDLRLLSSGPRTGLGEINLPA--VQPGSSIMPGKVNPVMPEVVNQIAFQVIGNDVTITLAAE  352 (473)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHcCCCcCCceEEECCC--CCCCCCCCCCCcCChHHHHHHHHHHHHHhHHHHHHHHHH
Confidence            9999999999999999999999999     499999987  799999999999999999999999999999987553  4


Q ss_pred             hccccccCCCchhhHhhhchHHHHHHHH-HHHHHHHHhhhccccCHHhhhhh
Q psy14319        153 ASTQWMERTLDDSANRRLTLSESFLTTD-CLLITLQNVLEGLVVYPKETYSI  203 (486)
Q Consensus       153 ~~~~~~erDl~~~~~~~~~l~~a~~~~~-~~l~~~~~vl~~l~vn~erm~~~  203 (486)
                      +++.+|+++.+...   ..+++++..+. .+..+...++++|+||++||++.
T Consensus       353 ~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~l~gL~vn~erm~~~  401 (473)
T PRK13353        353 AGQLELNVMEPVIA---FNLLESISILTNACRAFTDNCVKGIEANEERCKEY  401 (473)
T ss_pred             cCChhhhhhhhhHH---HHHHHHHHHHHHHHHHHHHHHHccCEECHHHHHHH
Confidence            56677666443321   23344555546 44444458999999999999983

>cd01596 Aspartase_like aspartase (L-aspartate ammonia-lyase) and fumarase class II enzymes

Probab=99.96  E-value=2.6e-29  Score=266.76  Aligned_cols=192  Identities=20%  Similarity=0.188  Sum_probs=158.1

Q ss_pred             hhhhhHhccHHHHHHHHHHHhhhcCCCceeecccCcccccchhhhhhhhhhhhHHHHHHcCCCC-C-CCcccccccccHH
Q psy14319          2 KFYKYVLGDGDKVKALDRLVTKKAGFNSSHIITGQTYSRKVDVIVTGVLSSLGASIHKKAGFNS-S-HIITGQTYSRKVD   79 (486)
Q Consensus         2 ~~~~~~~~d~~r~~~~~~~~~~~~g~~~~~a~~g~~~~r~~d~~~~Gt~a~~~~~~a~~LGf~~-~-~~~~~av~~RD~~   79 (486)
                      +|++.|.||.+|+.++.++++.+ ++| .+|+ |+.++  +|+.-   ...+..++|++|||.. + .++.|++++||++
T Consensus       198 ~~~~~l~r~~~rL~~~~~~~~~~-plG-g~A~-Gt~~~--~~~~~---~~~v~~~~a~~LGl~~~~~~n~~d~~~~rd~~  269 (450)
T cd01596         198 GYAAQLARDIARIEAALERLREL-NLG-GTAV-GTGLN--APPGY---AEKVAAELAELTGLPFVTAPNLFEATAAHDAL  269 (450)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHh-CCC-Ccce-eCCCC--CChhH---HHHHHHHHHHHhCCCCccCcCHHHHHhcchHH
Confidence            68999999999999999999853 442 3455 88776  66421   0133457899999995 4 3456899999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHH-----hccccccccccCCCCCccCCCCCCchHHHHHHHHHHHHHHHHHHHHHhhc
Q psy14319         80 VIVTGVLSSLGASIHKLATDLRLLA-----HMKEIEEPFESTQIGSSAMAYKRNPMRSERLCSLARFLMSLHQNSLATAS  154 (486)
Q Consensus        80 ~e~~~~la~la~~LsRlA~DL~l~s-----s~~el~e~~~~~~~GSSiMPqKrNP~~~E~ir~~a~~v~g~~~~~l~~~~  154 (486)
                      +++++++++++++|+|||+||++|+     +|+||.+|+  +++|||||||||||+.+|++|++++++.|....++....
T Consensus       270 ~e~~~~la~~~~~l~ria~Dl~~~ss~~~~e~gev~~~~--~~~GSS~MPqKrNP~~~E~ir~~a~~~~g~~~~~~~~~~  347 (450)
T cd01596         270 VEVSGALKTLAVSLSKIANDLRLLSSGPRAGLGEINLPA--NQPGSSIMPGKVNPVIPEAVNMVAAQVIGNDTAITMAGS  347 (450)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHcCCCcCCCeeEECCC--CCCCCCCCCCCCCCHHHHHHHHHHHHHhccHHHHHHHhh
Confidence            9999999999999999999999999     399999987  689999999999999999999999999999998665777


Q ss_pred             cccccCCCchhhHhhhchHHHHHHHHHHHHHHHHhhhccccCHHhhhhh
Q psy14319        155 TQWMERTLDDSANRRLTLSESFLTTDCLLITLQNVLEGLVVYPKETYSI  203 (486)
Q Consensus       155 ~~~~erDl~~~~~~~~~l~~a~~~~~~~l~~~~~vl~~l~vn~erm~~~  203 (486)
                      ..+++|....+......++++......++..+..++++|+||++||++.
T Consensus       348 ~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~v~~~rm~~~  396 (450)
T cd01596         348 AGQLELNVFKPVIAYNLLQSIRLLANACRSFRDKCVEGIEANEERCKEY  396 (450)
T ss_pred             cCcccccchhhHHHHHHHHHHHHHHHHHHHHHHHHHccCEECHHHHHHH
Confidence            8889985554432223667777777777777779999999999999983

This group contains aspartase (L-aspartate ammonia-lyase), fumarase class II enzymes, and related proteins. It is a member of the Lyase class I family. Members of this family for the most part catalyze similar beta-elimination reactions in which a C-N or C-O bond is cleaved with the release of fumarate as one of the products. These proteins are active as tetramers. The four active sites of the homotetrameric enzyme are each formed by residues from three different subunits. Aspartase catalyzes the reversible deamination of aspartic acid. Fumarase catalyzes the reversible hydration/dehydration of fumarate to L-malate during the Krebs cycle.

>TIGR00979 fumC_II fumarate hydratase, class II

Probab=99.96  E-value=4.3e-29  Score=265.61  Aligned_cols=190  Identities=17%  Similarity=0.134  Sum_probs=154.6

Q ss_pred             hhhhhHhccHHHHHHHHHHHhhhcCCCceeecccCcccccchhhhhhhhhhhhHHHHHHcCCCCCC--CcccccccccHH
Q psy14319          2 KFYKYVLGDGDKVKALDRLVTKKAGFNSSHIITGQTYSRKVDVIVTGVLSSLGASIHKKAGFNSSH--IITGQTYSRKVD   79 (486)
Q Consensus         2 ~~~~~~~~d~~r~~~~~~~~~~~~g~~~~~a~~g~~~~r~~d~~~~Gt~a~~~~~~a~~LGf~~~~--~~~~av~~RD~~   79 (486)
                      +|.+.|.||.+|++++.++++.. ++| .+|+ |+.++  +|+.. |  .....+++++|||+.+.  |+||++++||++
T Consensus       200 ~~~~~l~r~~~RL~~~~~~~~~~-~lG-g~Av-GT~~~--~~~~~-~--~~v~~~~a~~LGl~~~~~~n~~~~~~~rD~~  271 (458)
T TIGR00979       200 GYVAQLEHGLERIAYSLPHLYEL-AIG-GTAV-GTGLN--THPGF-D--EKVAEEIAKETGLPFVTAPNKFEALAAHDAI  271 (458)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHh-cCC-CChh-cCCcc--CChhH-H--HHHHHHHHHHhCCCCeecCcHHHHHcccHHH
Confidence            68999999999999999999853 442 3466 88775  66421 0  12234799999999853  568999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHH-----hccccccccccCCCCCccCCCCCCchHHHHHHHHHHHHHHHHHHHHHhhc
Q psy14319         80 VIVTGVLSSLGASIHKLATDLRLLA-----HMKEIEEPFESTQIGSSAMAYKRNPMRSERLCSLARFLMSLHQNSLATAS  154 (486)
Q Consensus        80 ~e~~~~la~la~~LsRlA~DL~l~s-----s~~el~e~~~~~~~GSSiMPqKrNP~~~E~ir~~a~~v~g~~~~~l~~~~  154 (486)
                      +|++++++.++++|+|||+||++|+     +|+||.+|+  +++|||||||||||+.+|+++++|+++.|....++....
T Consensus       272 ~e~~~~La~la~~L~kia~Dl~llss~~~~e~gev~~p~--~~~GSSiMP~K~NP~~~E~i~~~a~~v~g~~~~~~~~~~  349 (458)
T TIGR00979       272 VEAHGALKTLAASLMKIANDIRWLGSGPRCGLGELFIPE--NEPGSSIMPGKVNPTQCEALTMVCVQVMGNDATIGFAGS  349 (458)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhccccCCceeEECCC--CCCCCCCCCCCcCCHHHHHHHHHHHHHHhhHHHHHHHHH
Confidence            9999999999999999999999999     399999987  699999999999999999999999999999987664432


Q ss_pred             cccccCCCc--hhhHhhhchHHHHHHHHHHHHHHHHhhhccccCHHhhhhh
Q psy14319        155 TQWMERTLD--DSANRRLTLSESFLTTDCLLITLQNVLEGLVVYPKETYSI  203 (486)
Q Consensus       155 ~~~~erDl~--~~~~~~~~l~~a~~~~~~~l~~~~~vl~~l~vn~erm~~~  203 (486)
                      .  ++.++.  .+...|..++++......++.....++++|+||++||++.
T Consensus       350 ~--~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~L~v~~erm~~n  398 (458)
T TIGR00979       350 Q--GNFELNVFKPVIIYNFLQSVRLLSDAMESFRDHCVVGIEPNKERIQQL  398 (458)
T ss_pred             h--ccchhhhcchHHHHHHHHHHHHHHHHHHHHHHHHHccCEECHHHHHHH
Confidence            2  222222  2333377888888888888888889999999999999983

Putative fumarases from several species (Mycobacterium tuberculosis, Streptomyces coelicolor, Pseudomonas aeruginosa) branch deeply, although within the same branch of a phylogenetic tree rooted by aspartate ammonia-lyase sequences, and score between the trusted and noise cutoffs.

>PLN00134 fumarate hydratase; Provisional

Probab=99.96  E-value=6.8e-29  Score=264.10  Aligned_cols=192  Identities=18%  Similarity=0.159  Sum_probs=155.8

Q ss_pred             hhhhhHhccHHHHHHHHHHHhhhcCCCceeecccCcccccchhhhhhhhhhhhHHHHHHcCCCCCC--CcccccccccHH
Q psy14319          2 KFYKYVLGDGDKVKALDRLVTKKAGFNSSHIITGQTYSRKVDVIVTGVLSSLGASIHKKAGFNSSH--IITGQTYSRKVD   79 (486)
Q Consensus         2 ~~~~~~~~d~~r~~~~~~~~~~~~g~~~~~a~~g~~~~r~~d~~~~Gt~a~~~~~~a~~LGf~~~~--~~~~av~~RD~~   79 (486)
                      +|++.|.||.+|+.++.++++.. ++|| +|+ |+.++  +|+..   ...+..+++++|||..+.  ++.|++++||++
T Consensus       195 ~~~~~l~r~~~RL~~~~~~~~~~-~lGg-~Av-GT~~~--~~~~~---~~~v~~~la~~LGl~~~~~~n~~da~~~rD~~  266 (458)
T PLN00134        195 GYATQVKYGLNRVQCTLPRLYEL-AQGG-TAV-GTGLN--TKKGF---DEKIAAAVAEETGLPFVTAPNKFEALAAHDAF  266 (458)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHh-CCCC-eee-cCCcc--CChhH---HHHHHHHHHHHhCCCCCCCccHHHHhcCCHHH
Confidence            68999999999999999999853 4434 455 76665  66421   012234799999999863  456899999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHH-----hccccccccccCCCCCccCCCCCCchHHHHHHHHHHHHHHHHHHHHHhhc
Q psy14319         80 VIVTGVLSSLGASIHKLATDLRLLA-----HMKEIEEPFESTQIGSSAMAYKRNPMRSERLCSLARFLMSLHQNSLATAS  154 (486)
Q Consensus        80 ~e~~~~la~la~~LsRlA~DL~l~s-----s~~el~e~~~~~~~GSSiMPqKrNP~~~E~ir~~a~~v~g~~~~~l~~~~  154 (486)
                      ++++++++.++++|+|||+||++|+     +|+||.+|+  .++|||||||||||+.+|.++++|+++.|....++....
T Consensus       267 ~e~~~~l~~la~~L~kia~Dl~llss~p~~e~gev~lp~--~~~GSSiMP~KrNPv~~E~i~~~a~~v~g~~~~~~~~~~  344 (458)
T PLN00134        267 VELSGALNTVAVSLMKIANDIRLLGSGPRCGLGELNLPE--NEPGSSIMPGKVNPTQCEALTMVCAQVMGNHVAITVGGS  344 (458)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhccccCCcceEECCC--CCCCCCCCCCCcCCHHHHHHHHHHHHHHhHHHHHHHHHh
Confidence            9999999999999999999999999     499999987  369999999999999999999999999999987664444


Q ss_pred             cccccCCCchhhHhhhchHHHHHHHHHHHHHHHHhhhccccCHHhhhhh
Q psy14319        155 TQWMERTLDDSANRRLTLSESFLTTDCLLITLQNVLEGLVVYPKETYSI  203 (486)
Q Consensus       155 ~~~~erDl~~~~~~~~~l~~a~~~~~~~l~~~~~vl~~l~vn~erm~~~  203 (486)
                      ..+++.+...+.+.|..++++......++.+...++++|+||++||++.
T Consensus       345 ~~~~~~~~~~~~i~~~~l~~~~~~~~~~~~~~~~~l~~l~vn~erm~~~  393 (458)
T PLN00134        345 AGHFELNVFKPLIAYNLLHSIRLLGDASASFRKNCVRGIEANRERISKL  393 (458)
T ss_pred             cCCchhhccchHHHHHHHHHHHHHHHHHHHHHHHHHccCEECHHHHHHH
Confidence            3444433333334467788888888888888889999999999999983

>PRK09285 adenylosuccinate lyase; Provisional

Probab=99.96  E-value=4.7e-29  Score=265.03  Aligned_cols=190  Identities=17%  Similarity=0.109  Sum_probs=153.3

Q ss_pred             hhhhhHhccHHHHHHHHHHHhhhcCCCcee-ecccCcccccchhhhhhhhhhhhHHHHHHcCCCCCCCcccccccccHHH
Q psy14319          2 KFYKYVLGDGDKVKALDRLVTKKAGFNSSH-IITGQTYSRKVDVIVTGVLSSLGASIHKKAGFNSSHIITGQTYSRKVDV   80 (486)
Q Consensus         2 ~~~~~~~~d~~r~~~~~~~~~~~~g~~~~~-a~~g~~~~r~~d~~~~Gt~a~~~~~~a~~LGf~~~~~~~~av~~RD~~~   80 (486)
                      .|++.|.||.+|++++ ..+++..|..|++ +-. ..++ ..|.      ..+...++++|||..+... +++.+||+++
T Consensus       186 ~~~~~l~r~~~rL~~~-~~~g~~~GAvGt~~a~~-~~~~-~~~~------~~v~~~~~~~LGL~~~~~~-~~v~~rD~~~  255 (456)
T PRK09285        186 NVAYRLERQLKQLEAV-EILGKINGAVGNYNAHL-AAYP-EVDW------HAFSREFVESLGLTWNPYT-TQIEPHDYIA  255 (456)
T ss_pred             HHHHHHHHHHHHHHHH-HHhhhcccccccHHHHh-hhcC-CccH------HHHHHHHHHHhCCCCCCCc-cchhccHHHH
Confidence            6899999999999999 3343333322221 100 0001 0000      0123467779999975422 3589999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhccccccccccCCCCCccCCCCCCchHHHHHHHHHHHHHHHHHHHHHhhc-ccccc
Q psy14319         81 IVTGVLSSLGASIHKLATDLRLLAHMKEIEEPFESTQIGSSAMAYKRNPMRSERLCSLARFLMSLHQNSLATAS-TQWME  159 (486)
Q Consensus        81 e~~~~la~la~~LsRlA~DL~l~ss~~el~e~~~~~~~GSSiMPqKrNP~~~E~ir~~a~~v~g~~~~~l~~~~-~~~~e  159 (486)
                      +++++++.++++|+|||+|+++|++++|+.|+++++++|||+|||||||+.+|+++++++.+.+.... +..++ ..+||
T Consensus       256 e~~~~la~~a~~L~kia~Di~ll~~~~e~~e~~~~~~~GSS~MPhKrNPv~~E~i~~~a~~~~~~~~~-~~~~~~~~~~e  334 (456)
T PRK09285        256 ELFDAVARFNTILIDLDRDVWGYISLGYFKQKTKAGEIGSSTMPHKVNPIDFENSEGNLGLANALLEH-LAAKLPISRWQ  334 (456)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhCchhhhccCCCCCCCCCCCCCCcCchHHHHHHHHHHHHHHHHHH-HHhhccHHhhC
Confidence            99999999999999999999999998898888888999999999999999999999999999988765 44555 78999


Q ss_pred             CCCchhhHhhhchHHHHHHHHHHHHHHHHhhhccccCHHhhhhh
Q psy14319        160 RTLDDSANRRLTLSESFLTTDCLLITLQNVLEGLVVYPKETYSI  203 (486)
Q Consensus       160 rDl~~~~~~~~~l~~a~~~~~~~l~~~~~vl~~l~vn~erm~~~  203 (486)
                      ||+++|..+|.. ++++..+..++..+..++++|+||++||++.
T Consensus       335 RD~~~~~~e~~~-~~~~~~~~~~l~~~~~~l~~L~V~~~rm~~n  377 (456)
T PRK09285        335 RDLTDSTVLRNL-GVAFGYSLIAYDSLLKGLGKLEVNEARLAED  377 (456)
T ss_pred             CcCchhhhhcch-HHHHHHHHHHHHHHHHHHccCEECHHHHHHH
Confidence            999999999998 9999999999999999999999999999984

>PRK12425 fumarate hydratase; Provisional

Probab=99.96  E-value=2.6e-28  Score=259.89  Aligned_cols=181  Identities=23%  Similarity=0.214  Sum_probs=147.2

Q ss_pred             HHHHHHHHHHHcCCCCC--ccccccccCccHHHHHHHHHHHHHHHHHHHHHHHHHHhh-----hhhccccccCCCCcCcC
Q psy14319        229 VKALDRLVTKKAGFTSS--HIITGQTYSRKVDVIVTGVLSSLGASIHKLATDLRLLAH-----MKEIEEPFESTQIGSSA  301 (486)
Q Consensus       229 ~~~i~~~lA~~LGf~~a--~~~~~~~~~rd~~~e~~~~l~~~~~~l~rla~Dl~l~ss-----~~el~~~~~~~~~GSSi  301 (486)
                      ...+.+.+++.|||+.+  .|.++++++||+++|++++++.++++|+|||+||++|+|     |+|+.+|.  .++||||
T Consensus       241 ~~~~~~~La~~LG~~~~~~~n~~da~~~rD~~~e~~~~l~~la~~L~kia~Dl~llsS~p~~g~~ei~lp~--~~~GSSi  318 (464)
T PRK12425        241 AEAIAAELAALSGLPFVTAPNKFAALAGHEPLVSLSGALKTLAVALMKIANDLRLLGSGPRAGLAEVRLPA--NEPGSSI  318 (464)
T ss_pred             HHHHHHHHHHHhCCCCcccccHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHccCccCCceEEECCC--CCCCCCC
Confidence            46788889999999974  367788999999999999999999999999999999995     88999884  3999999


Q ss_pred             CCCCCCchHHHHHHHHHHHHHHHhHHHHHHhhhhHhhhcccccCCCCCCccccchhhhhhccCCcchhhhhhccCCCCcc
Q psy14319        302 MAYKRNPMRSERLCSLARFLMSLHQNSLATASTQWMERTLDDSANRFPTKSVFSCVTQVKQHGKENDLVDRIRADPYFAP  381 (486)
Q Consensus       302 MPqKrNP~~~E~~~~~a~~~~g~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~g~~~d~~~~~~~~~~~~~  381 (486)
                      |||||||+.+|.++++|++++|++.+++.+....+++.                                     +|+.|
T Consensus       319 MPqK~NP~~~E~i~~~a~~v~G~~~~v~~~~~~~~~q~-------------------------------------n~~~~  361 (464)
T PRK12425        319 MPGKVNPTQCEALSMLACQVMGNDATIGFAASQGHLQL-------------------------------------NVFKP  361 (464)
T ss_pred             CCCCcCCHHHHHHHHHHHHHHhHHHHHHHHHhcCCchh-------------------------------------hhcch
Confidence            99999999999999999999999999887643211110                                     11221


Q ss_pred             ccccCCCCCCCccccCCchhHhhhhhhcccchHHHHHHHHHHHHHHHhchhCCeeCHHHHHHHHhccCChhHHHHHHHHH
Q psy14319        382 ILNQMPTLLDPKSFYGRAPEQQRLSAKGIHTLSESFLTTDCLLITLQNVLEGLVVYPKVIQRHIDQELPFMATENIIMAM  461 (486)
Q Consensus       382 ~~~~~~~~~~p~~~~~~~~~q~~~~~~~~~~l~~~~~~~~~~l~~~~~~l~~l~v~~~~m~~~l~~~~~~~~a~~~~~~L  461 (486)
                                 ...              ...++++..+...++.++..|+++|+||++||+++++.  +++++    ..|
T Consensus       362 -----------~~~--------------~~~l~s~~~l~~~~~~~~~~~i~~l~vn~erm~~~l~~--~~~~a----t~L  410 (464)
T PRK12425        362 -----------VII--------------HNLLQSIRLLADGCRNFQQHCVAGLEPDAEQMAAHLER--GLMLV----TAL  410 (464)
T ss_pred             -----------HHH--------------HHHHHHHHHHHHHHHHHHHHHHccCEECHHHHHHHHHc--ccHHH----HHh
Confidence                       111              13677778888899999999999999999999999987  45644    455


Q ss_pred             HHcCCChHHHHHHHHHHHH
Q psy14319        462 VKAGGDRQVCHEKIRVLSH  480 (486)
Q Consensus       462 ~~~g~~fr~Ah~~v~~~~~  480 (486)
                      .++ +||++||++++++..
T Consensus       411 ~~~-ig~~~A~~ia~~a~~  428 (464)
T PRK12425        411 NPH-IGYDKAAEIAKKAYA  428 (464)
T ss_pred             hhc-cCHHHHHHHHHHHHH
Confidence            656 999999988876644

>cd01598 PurB PurB_like adenylosuccinases (adenylsuccinate lyase, ASL)

Probab=99.96  E-value=1e-28  Score=260.08  Aligned_cols=187  Identities=16%  Similarity=0.109  Sum_probs=153.5

Q ss_pred             hhhhhHhccHHHHHHHHHHHhhhcCCCceeecccCcccccchhhh-h-h--hhhhhhHHHHHHcCCCCCCCccccccccc
Q psy14319          2 KFYKYVLGDGDKVKALDRLVTKKAGFNSSHIITGQTYSRKVDVIV-T-G--VLSSLGASIHKKAGFNSSHIITGQTYSRK   77 (486)
Q Consensus         2 ~~~~~~~~d~~r~~~~~~~~~~~~g~~~~~a~~g~~~~r~~d~~~-~-G--t~a~~~~~~a~~LGf~~~~~~~~av~~RD   77 (486)
                      +|.+.|.||.+|++++.... + +|  |      ...+  ++..- . +  ....+.+.+++.|||..+..+| ++.+||
T Consensus       164 ~w~~~L~r~~~RL~~~~~~g-~-~g--G------avGt--~~~~~~~~~~~~~~~~~~~~a~~LgL~~~~~~~-~v~~rD  230 (425)
T cd01598         164 VFVYRLERQYKQLKQIEILG-K-FN--G------AVGN--FNAHLVAYPDVDWRKFSEFFVTSLGLTWNPYTT-QIEPHD  230 (425)
T ss_pred             HHHHHHHHHHHHHHHHHHhh-e-ee--C------chhh--hhhhhhccCcccHHHHHHHHHHHhCcCCCCccc-chhccH
Confidence            68999999999999982211 1 11  2      1111  11100 0 0  0124456899999999876665 588999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccccccCCCCCccCCCCCCchHHHHHHHHHHHHHHHHHHHHHhhc-cc
Q psy14319         78 VDVIVTGVLSSLGASIHKLATDLRLLAHMKEIEEPFESTQIGSSAMAYKRNPMRSERLCSLARFLMSLHQNSLATAS-TQ  156 (486)
Q Consensus        78 ~~~e~~~~la~la~~LsRlA~DL~l~ss~~el~e~~~~~~~GSSiMPqKrNP~~~E~ir~~a~~v~g~~~~~l~~~~-~~  156 (486)
                      +++|+++++++++++++|||+|+++|++-+|+.|+++++++|||||||||||+.+|+++++++.+.+.... +..++ ..
T Consensus       231 ~~~e~~~~La~la~~L~kia~Di~ll~s~ge~~e~~~~~~~GSS~MPhKrNPv~~E~i~~~a~~a~~~~~~-~~~~~~~~  309 (425)
T cd01598         231 YIAELFDALARINTILIDLCRDIWGYISLGYFKQKVKKGEVGSSTMPHKVNPIDFENAEGNLGLSNALLNH-LSAKLPIS  309 (425)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHhCCcceeecCCCCCCCcCCCCCCcCchHHHHHHHHHHHHHHHHHH-HHhhhhhh
Confidence            99999999999999999999999999987777887778899999999999999999999999999887764 44566 78


Q ss_pred             cccCCCchhhHhhhchHHHHHHHHHHHHHHHHhhhccccCHHhhhhh
Q psy14319        157 WMERTLDDSANRRLTLSESFLTTDCLLITLQNVLEGLVVYPKETYSI  203 (486)
Q Consensus       157 ~~erDl~~~~~~~~~l~~a~~~~~~~l~~~~~vl~~l~vn~erm~~~  203 (486)
                      +||||+++|..+|.. ++++..+..++..+..++++|+||++||++.
T Consensus       310 ~~eRD~~~~~~e~~~-~~~~~~~~~al~~~~~ll~~L~v~~~rm~~n  355 (425)
T cd01598         310 RLQRDLTDSTVLRNI-GVAFGHSLIAYKSLLRGLDKLELNEARLLED  355 (425)
T ss_pred             hhcccccchhhhccH-HHHHHHHHHHHHHHHHHHccCEECHHHHHHH
Confidence            999999999999988 9999999999999999999999999999983

This subgroup contains EcASL, the product of the purB gene in Escherichia coli, and related proteins. It is a member of the Lyase class I family of the Lyase_I superfamily. Members of the Lyase class I family function as homotetramers to catalyze similar beta-elimination reactions in which a Calpha-N or Calpha-O bond is cleaved with the subsequent release of fumarate as one of the products. The four active sites of the homotetrameric enzyme are each formed by residues from three different subunits. ASL catalyzes two non-sequential steps in the de novo purine biosynthesis pathway: the conversion of 5-aminoimidazole-(N-succinylocarboxamide) ribotide (SAICAR) into 5-aminoimidazole-4-carboxamide ribotide (AICAR) and; the conversion of adenylsuccinate (SAMP) into adenosine monophosphate (AMP).

>PLN02848 adenylosuccinate lyase

Probab=99.96  E-value=4.2e-28  Score=257.56  Aligned_cols=192  Identities=14%  Similarity=0.071  Sum_probs=153.4

Q ss_pred             hhhhhHhccHHHHHHHHHHHhhhcCCCceeecccCcccccchhhhhhhhhhhhHHHHHHcCCCCCCCcccccccccHHHH
Q psy14319          2 KFYKYVLGDGDKVKALDRLVTKKAGFNSSHIITGQTYSRKVDVIVTGVLSSLGASIHKKAGFNSSHIITGQTYSRKVDVI   81 (486)
Q Consensus         2 ~~~~~~~~d~~r~~~~~~~~~~~~g~~~~~a~~g~~~~r~~d~~~~Gt~a~~~~~~a~~LGf~~~~~~~~av~~RD~~~e   81 (486)
                      +|++.|.|+.+|+.++. ..++..|-.|..+..++.|+ .+|+.      ...+.+++.|||...+. ..++.+||+++|
T Consensus       189 ~w~~~L~r~~~rL~~~~-l~g~~~GAvGt~aa~~~~~~-~~d~~------~v~~~la~~LGL~~~~~-~~~v~~rD~~~e  259 (458)
T PLN02848        189 NFAYRLSRQRKQLSEVK-IKGKFAGAVGNYNAHMSAYP-EVDWP------AVAEEFVTSLGLTFNPY-VTQIEPHDYMAE  259 (458)
T ss_pred             HHHHHHHHHHHHHHHHH-hccEeecccchhhhhhhccC-CCCHH------HHHHHHHHHhCCCCCCc-hhhHhccHHHHH
Confidence            58889999999888772 22232232222222222332 23421      12347778899985221 136899999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhccccccccccCCCCCccCCCCCCchHHHHHHHHHHHHHHHHHHHHHhhccccccCC
Q psy14319         82 VTGVLSSLGASIHKLATDLRLLAHMKEIEEPFESTQIGSSAMAYKRNPMRSERLCSLARFLMSLHQNSLATASTQWMERT  161 (486)
Q Consensus        82 ~~~~la~la~~LsRlA~DL~l~ss~~el~e~~~~~~~GSSiMPqKrNP~~~E~ir~~a~~v~g~~~~~l~~~~~~~~erD  161 (486)
                      ++++++.++++++|||+|++.+++++|+.|++.++++|||||||||||+.+|+++++++.+.|....++...+.+++|||
T Consensus       260 ~~~~La~~a~~l~kia~Di~~~~e~ge~~e~~~~~~~GSS~MP~KrNPv~~E~i~~~a~~~~~~~~~~~~~~~~~~~eRD  339 (458)
T PLN02848        260 LFNAVSRFNNILIDFDRDIWSYISLGYFKQITKAGEVGSSTMPHKVNPIDFENSEGNLGLANAELSHLSMKLPISRMQRD  339 (458)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhhhhcCCcccccCCCCCCcCCCCCCcCcHHHHHHHHHHHHHHHHHHHHHhcCcchhhccc
Confidence            99999999999999999999888899998887778999999999999999999999999999999875533377889999


Q ss_pred             CchhhHhhhchHHHHHHHHHHHHHHHHhhhccccCHHhhhhh
Q psy14319        162 LDDSANRRLTLSESFLTTDCLLITLQNVLEGLVVYPKETYSI  203 (486)
Q Consensus       162 l~~~~~~~~~l~~a~~~~~~~l~~~~~vl~~l~vn~erm~~~  203 (486)
                      +++|..+|.. ++++..+..++..+..++++|+||++||++.
T Consensus       340 ~~~s~~e~~~-~~~~~~~~~al~~~~~~l~~L~v~~~rm~~n  380 (458)
T PLN02848        340 LTDSTVLRNM-GVGLGHSLLAYKSTLRGIGKLQVNEARLAED  380 (458)
T ss_pred             cchhhhhccH-HHHHHHHHHHHHHHHHHHccCEECHHHHHHH
Confidence            9999999998 9999999999999999999999999999984

>PLN00134 fumarate hydratase; Provisional

Probab=99.95  E-value=1.1e-27  Score=254.93  Aligned_cols=181  Identities=20%  Similarity=0.219  Sum_probs=149.9

Q ss_pred             HHHHHHHHHHHcCCCCC--ccccccccCccHHHHHHHHHHHHHHHHHHHHHHHHHHhh-----hhhccccccCCCCcCcC
Q psy14319        229 VKALDRLVTKKAGFTSS--HIITGQTYSRKVDVIVTGVLSSLGASIHKLATDLRLLAH-----MKEIEEPFESTQIGSSA  301 (486)
Q Consensus       229 ~~~i~~~lA~~LGf~~a--~~~~~~~~~rd~~~e~~~~l~~~~~~l~rla~Dl~l~ss-----~~el~~~~~~~~~GSSi  301 (486)
                      +..+.+.+++.|||..+  .+..+++++||++++++++++.++++|+|||+||++|+|     ||||.+|+  .++||||
T Consensus       235 ~~~v~~~la~~LGl~~~~~~n~~da~~~rD~~~e~~~~l~~la~~L~kia~Dl~llss~p~~e~gev~lp~--~~~GSSi  312 (458)
T PLN00134        235 DEKIAAAVAEETGLPFVTAPNKFEALAAHDAFVELSGALNTVAVSLMKIANDIRLLGSGPRCGLGELNLPE--NEPGSSI  312 (458)
T ss_pred             HHHHHHHHHHHhCCCCCCCccHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccCCcceEECCC--CCCCCCC
Confidence            57888899999999964  256678899999999999999999999999999999994     89999986  3699999


Q ss_pred             CCCCCCchHHHHHHHHHHHHHHHhHHHHHHhhhhHhhhcccccCCCCCCccccchhhhhhccCCcchhhhhhccCCCCcc
Q psy14319        302 MAYKRNPMRSERLCSLARFLMSLHQNSLATASTQWMERTLDDSANRFPTKSVFSCVTQVKQHGKENDLVDRIRADPYFAP  381 (486)
Q Consensus       302 MPqKrNP~~~E~~~~~a~~~~g~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~g~~~d~~~~~~~~~~~~~  381 (486)
                      |||||||+.+|+++++|+++.|.+.+++.....++++.                                          
T Consensus       313 MP~KrNPv~~E~i~~~a~~v~g~~~~~~~~~~~~~~~~------------------------------------------  350 (458)
T PLN00134        313 MPGKVNPTQCEALTMVCAQVMGNHVAITVGGSAGHFEL------------------------------------------  350 (458)
T ss_pred             CCCCcCCHHHHHHHHHHHHHHhHHHHHHHHHhcCCchh------------------------------------------
Confidence            99999999999999999999999998875432111110                                          


Q ss_pred             ccccCCCCCCCccccCCchhHhhhhhhcccchHHHHHHHHHHHHHHHhchhCCeeCHHHHHHHHhccCChhHHHHHHHHH
Q psy14319        382 ILNQMPTLLDPKSFYGRAPEQQRLSAKGIHTLSESFLTTDCLLITLQNVLEGLVVYPKVIQRHIDQELPFMATENIIMAM  461 (486)
Q Consensus       382 ~~~~~~~~~~p~~~~~~~~~q~~~~~~~~~~l~~~~~~~~~~l~~~~~~l~~l~v~~~~m~~~l~~~~~~~~a~~~~~~L  461 (486)
                            ++..|.+              .|..+++++.+...+..+...|+++|+||++||+++++.+.+++      ..|
T Consensus       351 ------~~~~~~i--------------~~~~l~~~~~~~~~~~~~~~~~l~~l~vn~erm~~~l~~~~~l~------~~L  404 (458)
T PLN00134        351 ------NVFKPLI--------------AYNLLHSIRLLGDASASFRKNCVRGIEANRERISKLLHESLMLV------TAL  404 (458)
T ss_pred             ------hccchHH--------------HHHHHHHHHHHHHHHHHHHHHHHccCEECHHHHHHHHHhccchH------HHh
Confidence                  1112221              36789999999999999989999999999999999999987754      466


Q ss_pred             HHcCCChHHHHHHHHHHHH
Q psy14319        462 VKAGGDRQVCHEKIRVLSH  480 (486)
Q Consensus       462 ~~~g~~fr~Ah~~v~~~~~  480 (486)
                      +++ +||++||++++++..
T Consensus       405 a~~-ig~~~A~~~~~~a~~  422 (458)
T PLN00134        405 NPK-IGYDKAAAVAKKAHK  422 (458)
T ss_pred             hhc-cCHHHHHHHHHHHHH
Confidence            665 999999997666644

>TIGR00979 fumC_II fumarate hydratase, class II

Probab=99.95  E-value=1.1e-27  Score=254.89  Aligned_cols=181  Identities=20%  Similarity=0.190  Sum_probs=148.6

Q ss_pred             HHHHHHHHHHHcCCCCCc--cccccccCccHHHHHHHHHHHHHHHHHHHHHHHHHHhh-----hhhccccccCCCCcCcC
Q psy14319        229 VKALDRLVTKKAGFTSSH--IITGQTYSRKVDVIVTGVLSSLGASIHKLATDLRLLAH-----MKEIEEPFESTQIGSSA  301 (486)
Q Consensus       229 ~~~i~~~lA~~LGf~~a~--~~~~~~~~rd~~~e~~~~l~~~~~~l~rla~Dl~l~ss-----~~el~~~~~~~~~GSSi  301 (486)
                      +..+.+.+++.|||..+.  |..+++++||+++|++++++.++++|+|||+||++|+|     ||||.+|+  +++||||
T Consensus       240 ~~~v~~~~a~~LGl~~~~~~n~~~~~~~rD~~~e~~~~La~la~~L~kia~Dl~llss~~~~e~gev~~p~--~~~GSSi  317 (458)
T TIGR00979       240 DEKVAEEIAKETGLPFVTAPNKFEALAAHDAIVEAHGALKTLAASLMKIANDIRWLGSGPRCGLGELFIPE--NEPGSSI  317 (458)
T ss_pred             HHHHHHHHHHHhCCCCeecCcHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccCCceeEECCC--CCCCCCC
Confidence            467888899999998742  33346799999999999999999999999999999994     99999986  6999999


Q ss_pred             CCCCCCchHHHHHHHHHHHHHHHhHHHHHHhhhhHhhhcccccCCCCCCccccchhhhhhccCCcchhhhhhccCCCCcc
Q psy14319        302 MAYKRNPMRSERLCSLARFLMSLHQNSLATASTQWMERTLDDSANRFPTKSVFSCVTQVKQHGKENDLVDRIRADPYFAP  381 (486)
Q Consensus       302 MPqKrNP~~~E~~~~~a~~~~g~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~g~~~d~~~~~~~~~~~~~  381 (486)
                      |||||||+.+|+++++|+++.|...+++.+...                              +++++            
T Consensus       318 MP~K~NP~~~E~i~~~a~~v~g~~~~~~~~~~~------------------------------~~~~~------------  355 (458)
T TIGR00979       318 MPGKVNPTQCEALTMVCVQVMGNDATIGFAGSQ------------------------------GNFEL------------  355 (458)
T ss_pred             CCCCcCCHHHHHHHHHHHHHHhhHHHHHHHHHh------------------------------ccchh------------
Confidence            999999999999999999999999988866421                              11111            


Q ss_pred             ccccCCCCCCCccccCCchhHhhhhhhcccchHHHHHHHHHHHHHHHhchhCCeeCHHHHHHHHhccCChhHHHHHHHHH
Q psy14319        382 ILNQMPTLLDPKSFYGRAPEQQRLSAKGIHTLSESFLTTDCLLITLQNVLEGLVVYPKVIQRHIDQELPFMATENIIMAM  461 (486)
Q Consensus       382 ~~~~~~~~~~p~~~~~~~~~q~~~~~~~~~~l~~~~~~~~~~l~~~~~~l~~l~v~~~~m~~~l~~~~~~~~a~~~~~~L  461 (486)
                            +.+.|..              .|..+++++.+..++..+...++++|+||+|||+++++.+.+      ++..|
T Consensus       356 ------~~~~~~~--------------~~~~l~~~~~~~~~~~~~~~~~l~~L~v~~erm~~nl~~~~~------~~t~L  409 (458)
T TIGR00979       356 ------NVFKPVI--------------IYNFLQSVRLLSDAMESFRDHCVVGIEPNKERIQQLLNNSLM------LVTAL  409 (458)
T ss_pred             ------hhcchHH--------------HHHHHHHHHHHHHHHHHHHHHHHccCEECHHHHHHHHHcCcc------HHHHh
Confidence                  1112221              367899999999999999889999999999999999988766      34566


Q ss_pred             HHcCCChHHHHHHHHHHHH
Q psy14319        462 VKAGGDRQVCHEKIRVLSH  480 (486)
Q Consensus       462 ~~~g~~fr~Ah~~v~~~~~  480 (486)
                      ++. +||++||++++++..
T Consensus       410 a~~-lg~~~A~~~~~~a~~  427 (458)
T TIGR00979       410 NPH-IGYDNAAKIAKKAHK  427 (458)
T ss_pred             hhc-cCHHHHHHHHHHHHH
Confidence            665 999999996666544

Putative fumarases from several species (Mycobacterium tuberculosis, Streptomyces coelicolor, Pseudomonas aeruginosa) branch deeply, although within the same branch of a phylogenetic tree rooted by aspartate ammonia-lyase sequences, and score between the trusted and noise cutoffs.

>TIGR00839 aspA aspartate ammonia-lyase

Probab=99.95  E-value=5e-28  Score=257.80  Aligned_cols=188  Identities=18%  Similarity=0.196  Sum_probs=149.8

Q ss_pred             hhhhhHhccHHHHHHHHHHHhhhcCCCceeecccCcccccchhhhhhhhhhhhHHHHHHcCCCCC--CCcccccccccHH
Q psy14319          2 KFYKYVLGDGDKVKALDRLVTKKAGFNSSHIITGQTYSRKVDVIVTGVLSSLGASIHKKAGFNSS--HIITGQTYSRKVD   79 (486)
Q Consensus         2 ~~~~~~~~d~~r~~~~~~~~~~~~g~~~~~a~~g~~~~r~~d~~~~Gt~a~~~~~~a~~LGf~~~--~~~~~av~~RD~~   79 (486)
                      +|.+.|.||.+|+.++.++++.. ++|| +|+ |+.++  +|+.-   ......++|++|||+.+  .+.+|++++||++
T Consensus       201 ~~~~~l~r~~~RL~~~~~~~~~~-~lGg-~Av-GT~~~--~~~~~---~~~v~~~~a~~LGl~~~~~~n~~da~~~rd~~  272 (468)
T TIGR00839       201 AFSILLEEEVKNIKRTAELLLEV-NLGA-TAI-GTGLN--TPPEY---SPLVVKKLAEVTGLPCVPAENLIEATSDCGAY  272 (468)
T ss_pred             HHHHHHHHHHHHHHHHHHHhhhc-CCCC-cce-eCCCc--CChhH---HHHHHHHHHHHhCCCCCCCccHHHHhcccHHH
Confidence            68999999999999999999853 4533 456 88775  66421   12334588999999986  3567999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHh-----ccccccccccCCCCCccCCCCCCchHHHHHHHHHHHHHHHHHHHHHhhc
Q psy14319         80 VIVTGVLSSLGASIHKLATDLRLLAH-----MKEIEEPFESTQIGSSAMAYKRNPMRSERLCSLARFLMSLHQNSLATAS  154 (486)
Q Consensus        80 ~e~~~~la~la~~LsRlA~DL~l~ss-----~~el~e~~~~~~~GSSiMPqKrNP~~~E~ir~~a~~v~g~~~~~l~~~~  154 (486)
                      +|++++++.++++|+|||+||++|++     |+||.+|+  +++|||||||||||+.+|++|++|+++.|....++....
T Consensus       273 ~e~~~~l~~la~~L~ria~Dl~l~~s~~~~~~~ev~~~~--~~~gSS~MPqKrNP~~~E~ir~~a~~~~g~~~~~~~~~~  350 (468)
T TIGR00839       273 VMVHGALKRLAVKMSKICNDLRLLSSGPRAGLNEINLPE--LQAGSSIMPAKVNPVVPEVVNQVCFKVIGNDTTVTLAAE  350 (468)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhcCCcCCceEEeCCC--CCCCCCCCCCCcCcHHHHHHHHHHHHHHhHHHHHHHHHh
Confidence            99999999999999999999999993     78899984  789999999999999999999999999999987644211


Q ss_pred             cccccCCCchhhHhhhchHHH----HHHHHHHHHHHHHhhhccccCHHhhhhh
Q psy14319        155 TQWMERTLDDSANRRLTLSES----FLTTDCLLITLQNVLEGLVVYPKETYSI  203 (486)
Q Consensus       155 ~~~~erDl~~~~~~~~~l~~a----~~~~~~~l~~~~~vl~~l~vn~erm~~~  203 (486)
                      .    .+++.|..+|..++++    ......++..+..++++++||++||++.
T Consensus       351 ~----~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~vn~erm~~~  399 (468)
T TIGR00839       351 A----GQLQLNVMEPVIGQAMFESIHILTNACYNLTDKCVNGITANKEICEGY  399 (468)
T ss_pred             c----CChHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHccCEECHHHHHHH
Confidence            1    2334555666655554    4444555557889999999999999983

Fumarate hydratase scores as high as 570 bits against this model.

>cd01362 Fumarase_classII Class II fumarases

Probab=99.95  E-value=7.3e-28  Score=256.21  Aligned_cols=190  Identities=16%  Similarity=0.119  Sum_probs=153.1

Q ss_pred             hhhhhHhccHHHHHHHHHHHhhhcCCCceeecccCcccccchhhhhhhhhhhhHHHHHHcCCCCC--CCcccccccccHH
Q psy14319          2 KFYKYVLGDGDKVKALDRLVTKKAGFNSSHIITGQTYSRKVDVIVTGVLSSLGASIHKKAGFNSS--HIITGQTYSRKVD   79 (486)
Q Consensus         2 ~~~~~~~~d~~r~~~~~~~~~~~~g~~~~~a~~g~~~~r~~d~~~~Gt~a~~~~~~a~~LGf~~~--~~~~~av~~RD~~   79 (486)
                      +|.+.|.||.+|+.++.++++.+ ++|| +|+ |+.++  +|+...   ..+..++|++|||..+  .++.|++++||++
T Consensus       199 ~~~~~l~r~~~rL~~~~~r~~~~-~lGg-~A~-Gt~~~--~~~~~~---~~v~~~~a~~LGl~~~~~~n~~da~~~rD~~  270 (455)
T cd01362         199 GYAAQLEHAIARIEAALPRLYEL-ALGG-TAV-GTGLN--AHPGFA---EKVAAELAELTGLPFVTAPNKFEALAAHDAL  270 (455)
T ss_pred             HHHHHHHHHHHHHHHHHHHhhhc-CcCC-eec-cCCcc--CChhHH---HHHHHHHHHHhCCCCccCCCHHHHHhCCHHH
Confidence            68999999999999999999853 4433 354 88775  664210   1234589999999954  3456899999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHH-----hccccccccccCCCCCccCCCCCCchHHHHHHHHHHHHHHHHHHHHHhh-
Q psy14319         80 VIVTGVLSSLGASIHKLATDLRLLA-----HMKEIEEPFESTQIGSSAMAYKRNPMRSERLCSLARFLMSLHQNSLATA-  153 (486)
Q Consensus        80 ~e~~~~la~la~~LsRlA~DL~l~s-----s~~el~e~~~~~~~GSSiMPqKrNP~~~E~ir~~a~~v~g~~~~~l~~~-  153 (486)
                      ++++++++.++++|+|||+||++|+     +|+||.+|+  +++|||||||||||+.+|++|++++++.|....++... 
T Consensus       271 ~e~~~~l~~la~~l~ria~Dl~~~~s~~~~e~gev~~~~--~~~GSS~MPqKrNP~~~E~ir~~a~~~~g~~~~~~~~~~  348 (455)
T cd01362         271 VEASGALKTLAVSLMKIANDIRWLGSGPRCGLGELSLPE--NEPGSSIMPGKVNPTQCEALTMVAAQVMGNDAAITIAGS  348 (455)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHccCccCCCceEECCC--CCCCCCCCCCCCCcHHHHHHHHHHHHHhhhHHHHHHHHh
Confidence            9999999999999999999999999     399999987  68999999999999999999999999999998765432 


Q ss_pred             -ccccccCCCchhhHhhhchHHHHHHHHHHHHHHHHhhhccccCHHhhhhh
Q psy14319        154 -STQWMERTLDDSANRRLTLSESFLTTDCLLITLQNVLEGLVVYPKETYSI  203 (486)
Q Consensus       154 -~~~~~erDl~~~~~~~~~l~~a~~~~~~~l~~~~~vl~~l~vn~erm~~~  203 (486)
                       .+..++.+.+..  .|..++++......++..+..++++|+||++||++.
T Consensus       349 ~~~~~~~~~~~~~--~~~~l~~~~~~~~~~~~~~~~~l~~L~v~~~rm~~~  397 (455)
T cd01362         349 SGNFELNVFKPVI--IYNLLQSIRLLADACRSFADKCVAGIEPNRERIAEL  397 (455)
T ss_pred             cCchhhhhcchHH--HHHHHHHHHHHHHHHHHHHHHHHccCEECHHHHHHH
Confidence             222333444322  366777888888888888889999999999999983

This subgroup contains Escherichia coli fumarase C, human mitochondrial fumarase, and related proteins. It is a member of the Lyase class I family. Members of this family for the most part catalyze similar beta-elimination reactions in which a C-N or C-O bond is cleaved with the release of fumarate as one of the products. These proteins are active as tetramers. The four active sites of the homotetrameric enzyme are each formed by residues from three different subunits. Fumarase catalyzes the reversible hydration/dehydration of fumarate to L-malate during the Krebs cycle.

>PRK13353 aspartate ammonia-lyase; Provisional

Probab=99.95  E-value=3e-27  Score=252.63  Aligned_cols=178  Identities=19%  Similarity=0.176  Sum_probs=141.8

Q ss_pred             HHHHHHHHHHHcCCCCC--ccccccccCccHHHHHHHHHHHHHHHHHHHHHHHHHHhh-----hhhccccccCCCCcCcC
Q psy14319        229 VKALDRLVTKKAGFTSS--HIITGQTYSRKVDVIVTGVLSSLGASIHKLATDLRLLAH-----MKEIEEPFESTQIGSSA  301 (486)
Q Consensus       229 ~~~i~~~lA~~LGf~~a--~~~~~~~~~rd~~~e~~~~l~~~~~~l~rla~Dl~l~ss-----~~el~~~~~~~~~GSSi  301 (486)
                      +..+.+.+++.|||..+  .|.++++++||+++|++++++.++++|+|||+||++|+|     ||||.+|+  +++||||
T Consensus       243 ~~~~~~~la~~LG~~~~~~~n~~~a~~~rD~~~e~~~~la~la~~l~riA~Dl~llss~pr~e~gev~lp~--~~~GSSi  320 (473)
T PRK13353        243 IERVVKHLAAITGLPLVGAEDLVDATQNTDAFVEVSGALKVCAVNLSKIANDLRLLSSGPRTGLGEINLPA--VQPGSSI  320 (473)
T ss_pred             HHHHHHHHHHHhCCCCccccchHhhhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcCCceEEECCC--CCCCCCC
Confidence            46778889999999842  266778899999999999999999999999999999994     99999986  8999999


Q ss_pred             CCCCCCchHHHHHHHHHHHHHHHhHHHHHHhhhhHhhhcccccCCCCCCccccchhhhhhccCCcchhhhhhccCCCCcc
Q psy14319        302 MAYKRNPMRSERLCSLARFLMSLHQNSLATASTQWMERTLDDSANRFPTKSVFSCVTQVKQHGKENDLVDRIRADPYFAP  381 (486)
Q Consensus       302 MPqKrNP~~~E~~~~~a~~~~g~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~g~~~d~~~~~~~~~~~~~  381 (486)
                      |||||||+.+|+++++|+++.|++++++.......++                          ++.              
T Consensus       321 MPqKrNP~~~E~ir~~a~~v~g~~~~~~~~~~~~~~~--------------------------~~~--------------  360 (473)
T PRK13353        321 MPGKVNPVMPEVVNQIAFQVIGNDVTITLAAEAGQLE--------------------------LNV--------------  360 (473)
T ss_pred             CCCCcCChHHHHHHHHHHHHHhHHHHHHHHHHcCChh--------------------------hhh--------------
Confidence            9999999999999999999999999887653211110                          000              


Q ss_pred             ccccCCCCCCCccccCCchhHhhhhhhcccchHHHHHHH---H-HHHHHHHhchhCCeeCHHHHHHHHhccCChhHHHHH
Q psy14319        382 ILNQMPTLLDPKSFYGRAPEQQRLSAKGIHTLSESFLTT---D-CLLITLQNVLEGLVVYPKVIQRHIDQELPFMATENI  457 (486)
Q Consensus       382 ~~~~~~~~~~p~~~~~~~~~q~~~~~~~~~~l~~~~~~~---~-~~l~~~~~~l~~l~v~~~~m~~~l~~~~~~~~a~~~  457 (486)
                                                -+|..+++++..+   . .+..+...++++|+||++||+++++.+.+  +++++
T Consensus       361 --------------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~l~gL~vn~erm~~~l~~~~~--l~t~L  412 (473)
T PRK13353        361 --------------------------MEPVIAFNLLESISILTNACRAFTDNCVKGIEANEERCKEYVEKSVG--IATAL  412 (473)
T ss_pred             --------------------------hhhhHHHHHHHHHHHHHHHHHHHHHHHHccCEECHHHHHHHHHhCcc--hHHHH
Confidence                                      0233444444444   6 55555568999999999999999988755  55666


Q ss_pred             HHHHHHcCCChHHHHHHHHHHHHHhhhc
Q psy14319        458 IMAMVKAGGDRQVCHEKIRVLSHQAGAQ  485 (486)
Q Consensus       458 ~~~L~~~g~~fr~Ah~~v~~~~~~a~~~  485 (486)
                      +..|         ||++|++++++|.++
T Consensus       413 a~~L---------gh~~v~~~~~~a~~~  431 (473)
T PRK13353        413 NPHI---------GYEAAARIAKEAIAT  431 (473)
T ss_pred             HHHH---------HHHHHHHHHHHHHHh
Confidence            6665         699999999988654

>PRK12273 aspA aspartate ammonia-lyase; Provisional

Probab=99.95  E-value=2.5e-27  Score=253.14  Aligned_cols=180  Identities=20%  Similarity=0.211  Sum_probs=141.6

Q ss_pred             HHHHHHHHHHHcCCCC-C-ccccccccCccHHHHHHHHHHHHHHHHHHHHHHHHHHhh-----hhhccccccCCCCcCcC
Q psy14319        229 VKALDRLVTKKAGFTS-S-HIITGQTYSRKVDVIVTGVLSSLGASIHKLATDLRLLAH-----MKEIEEPFESTQIGSSA  301 (486)
Q Consensus       229 ~~~i~~~lA~~LGf~~-a-~~~~~~~~~rd~~~e~~~~l~~~~~~l~rla~Dl~l~ss-----~~el~~~~~~~~~GSSi  301 (486)
                      +..+.+.+++.|||.. + .|.++++++||+++|++++++.++++|+|||+||++|+|     ||||.+|+  +++||||
T Consensus       245 ~~~v~~~~A~~LGf~~~~~~n~~da~~~rD~~~e~~~~la~la~~L~rlA~Di~llss~e~~e~gev~lp~--~~~GSSi  322 (472)
T PRK12273        245 IELVVEKLAEITGLPLVPAEDLIEATQDTGAFVEVSGALKRLAVKLSKICNDLRLLSSGPRAGLNEINLPA--VQAGSSI  322 (472)
T ss_pred             HHHHHHHHHHHcCCCcccCcCHHHHHhCcHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccCceEEECCC--CCCcCCC
Confidence            4788899999999985 3 367788999999999999999999999999999999995     89999984  8999999


Q ss_pred             CCCCCCchHHHHHHHHHHHHHHHhHHHHHHhhhhHhhhcccccCCCCCCccccchhhhhhccCCcchhhhhhccCCCCcc
Q psy14319        302 MAYKRNPMRSERLCSLARFLMSLHQNSLATASTQWMERTLDDSANRFPTKSVFSCVTQVKQHGKENDLVDRIRADPYFAP  381 (486)
Q Consensus       302 MPqKrNP~~~E~~~~~a~~~~g~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~g~~~d~~~~~~~~~~~~~  381 (486)
                      |||||||+.+|++|++|+++.|+..+++.......++                          ++.              
T Consensus       323 MPqKrNP~~~E~ir~~a~~v~G~~~~~~~~~~~~~~~--------------------------~~~--------------  362 (472)
T PRK12273        323 MPGKVNPVIPEVVNQVCFQVIGNDTTVTMAAEAGQLE--------------------------LNV--------------  362 (472)
T ss_pred             CCcccCcHHHHHHHHHHHHHhhhHHHHHHHHHcCCch--------------------------hhh--------------
Confidence            9999999999999999999999999887543211000                          000              


Q ss_pred             ccccCCCCCCCccccCCchhHhhhhhhcccchHHHHHHHHHHHHHHH-hchhCCeeCHHHHHHHHhccCChhHHHHHHHH
Q psy14319        382 ILNQMPTLLDPKSFYGRAPEQQRLSAKGIHTLSESFLTTDCLLITLQ-NVLEGLVVYPKVIQRHIDQELPFMATENIIMA  460 (486)
Q Consensus       382 ~~~~~~~~~~p~~~~~~~~~q~~~~~~~~~~l~~~~~~~~~~l~~~~-~~l~~l~v~~~~m~~~l~~~~~~~~a~~~~~~  460 (486)
                                        .+|..+     ..+.+++..+..++..+. .++++++||++||+++++.+.+  +++++++.
T Consensus       363 ------------------~~~~~~-----~~~~~~~~~~~~~l~~~~~~~l~~l~v~~erm~~~l~~~~~--~~t~LA~~  417 (472)
T PRK12273        363 ------------------MEPVIA-----YNLFESISILTNACRTLREKCIDGITANEERCREYVENSIG--IVTALNPY  417 (472)
T ss_pred             ------------------hhhhhH-----HHHHHHHHHHHHHHHHHHHHHHccCEECHHHHHHHHHhCCc--hHHHHHHH
Confidence                              011111     234455999999999999 5999999999999999987755  55666666


Q ss_pred             HHHcCCChHHHHHHHHHHHHHhhh
Q psy14319        461 MVKAGGDRQVCHEKIRVLSHQAGA  484 (486)
Q Consensus       461 L~~~g~~fr~Ah~~v~~~~~~a~~  484 (486)
                      |         +|+++++++++|.+
T Consensus       418 L---------~~~~a~~lv~~a~~  432 (472)
T PRK12273        418 I---------GYENAAEIAKEALE  432 (472)
T ss_pred             H---------HHHHHHHHHHHHHH
Confidence            5         35555555555543

>cd01596 Aspartase_like aspartase (L-aspartate ammonia-lyase) and fumarase class II enzymes

Probab=99.95  E-value=4.3e-27  Score=249.87  Aligned_cols=180  Identities=21%  Similarity=0.212  Sum_probs=147.8

Q ss_pred             HHHHHHHHHHHcCCCC-Cc-cccccccCccHHHHHHHHHHHHHHHHHHHHHHHHHHhh-----hhhccccccCCCCcCcC
Q psy14319        229 VKALDRLVTKKAGFTS-SH-IITGQTYSRKVDVIVTGVLSSLGASIHKLATDLRLLAH-----MKEIEEPFESTQIGSSA  301 (486)
Q Consensus       229 ~~~i~~~lA~~LGf~~-a~-~~~~~~~~rd~~~e~~~~l~~~~~~l~rla~Dl~l~ss-----~~el~~~~~~~~~GSSi  301 (486)
                      +..+++.+++.|||.. +. +..+++++||++++++++++.++.+|+|||+||++|+|     ||||.+|+  +++||||
T Consensus       238 ~~~v~~~~a~~LGl~~~~~~n~~d~~~~rd~~~e~~~~la~~~~~l~ria~Dl~~~ss~~~~e~gev~~~~--~~~GSS~  315 (450)
T cd01596         238 AEKVAAELAELTGLPFVTAPNLFEATAAHDALVEVSGALKTLAVSLSKIANDLRLLSSGPRAGLGEINLPA--NQPGSSI  315 (450)
T ss_pred             HHHHHHHHHHHhCCCCccCcCHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcCCCeeEECCC--CCCCCCC
Confidence            5788899999999984 33 56678899999999999999999999999999999994     89999986  7899999


Q ss_pred             CCCCCCchHHHHHHHHHHHHHHHhHHHHHHhhhhHhhhcccccCCCCCCccccchhhhhhccCCcchhhhhhccCCCCcc
Q psy14319        302 MAYKRNPMRSERLCSLARFLMSLHQNSLATASTQWMERTLDDSANRFPTKSVFSCVTQVKQHGKENDLVDRIRADPYFAP  381 (486)
Q Consensus       302 MPqKrNP~~~E~~~~~a~~~~g~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~g~~~d~~~~~~~~~~~~~  381 (486)
                      |||||||+.+|+++++++++.|..++++......++||....                                      
T Consensus       316 MPqKrNP~~~E~ir~~a~~~~g~~~~~~~~~~~~~~e~~~~~--------------------------------------  357 (450)
T cd01596         316 MPGKVNPVIPEAVNMVAAQVIGNDTAITMAGSAGQLELNVFK--------------------------------------  357 (450)
T ss_pred             CCCCCCCHHHHHHHHHHHHHhccHHHHHHHhhcCcccccchh--------------------------------------
Confidence            999999999999999999999999999877777777762110                                      


Q ss_pred             ccccCCCCCCCccccCCchhHhhhhhhcccchHHHHHHHHHHHHHHHhchhCCeeCHHHHHHHHhccCChhHHHHHHHHH
Q psy14319        382 ILNQMPTLLDPKSFYGRAPEQQRLSAKGIHTLSESFLTTDCLLITLQNVLEGLVVYPKVIQRHIDQELPFMATENIIMAM  461 (486)
Q Consensus       382 ~~~~~~~~~~p~~~~~~~~~q~~~~~~~~~~l~~~~~~~~~~l~~~~~~l~~l~v~~~~m~~~l~~~~~~~~a~~~~~~L  461 (486)
                                |..              ....+++++.+...++.+...++++|+||++||+++++.+.+  +++++++.|
T Consensus       358 ----------~~~--------------~~~~~~~~~~~~~~~~~~~~~~l~~l~v~~~rm~~~l~~~~~--~~t~LA~~l  411 (450)
T cd01596         358 ----------PVI--------------AYNLLQSIRLLANACRSFRDKCVEGIEANEERCKEYVENSLM--LVTALNPHI  411 (450)
T ss_pred             ----------hHH--------------HHHHHHHHHHHHHHHHHHHHHHHccCEECHHHHHHHHHhCcc--hHHHHhHHH
Confidence                      000              012677888888888888889999999999999999988755  446566654


Q ss_pred             HHcCCChHHHHHHHHHHH
Q psy14319        462 VKAGGDRQVCHEKIRVLS  479 (486)
Q Consensus       462 ~~~g~~fr~Ah~~v~~~~  479 (486)
                           +|+.||+++.++.
T Consensus       412 -----g~~~a~~~v~~a~  424 (450)
T cd01596         412 -----GYEKAAEIAKEAL  424 (450)
T ss_pred             -----hHHHHHHHHHHHH
Confidence                 6777777665543

This group contains aspartase (L-aspartate ammonia-lyase), fumarase class II enzymes, and related proteins. It is a member of the Lyase class I family. Members of this family for the most part catalyze similar beta-elimination reactions in which a C-N or C-O bond is cleaved with the release of fumarate as one of the products. These proteins are active as tetramers. The four active sites of the homotetrameric enzyme are each formed by residues from three different subunits. Aspartase catalyzes the reversible deamination of aspartic acid. Fumarase catalyzes the reversible hydration/dehydration of fumarate to L-malate during the Krebs cycle.

>PRK05975 3-carboxy-cis,cis-muconate cycloisomerase; Provisional

Probab=99.95  E-value=2.3e-27  Score=244.88  Aligned_cols=176  Identities=24%  Similarity=0.215  Sum_probs=149.3

Q ss_pred             hhhhhHhccHHHHHHHHHHHhhhcCCCceeecccCcccccchhhhhhhhhhhhHHHHHHcCCCCCCCcccccccccHHHH
Q psy14319          2 KFYKYVLGDGDKVKALDRLVTKKAGFNSSHIITGQTYSRKVDVIVTGVLSSLGASIHKKAGFNSSHIITGQTYSRKVDVI   81 (486)
Q Consensus         2 ~~~~~~~~d~~r~~~~~~~~~~~~g~~~~~a~~g~~~~r~~d~~~~Gt~a~~~~~~a~~LGf~~~~~~~~av~~RD~~~e   81 (486)
                      +|++.|.||.+|+.++.+++.. .+++| .+.++..++..        .....+++|++|||..+. +|  ..+||++++
T Consensus       170 ~~~~~l~r~~~rL~~~~~~~~~-~~lGG-AvGt~~~~~~~--------~~~~~~~~a~~LGl~~~~-~~--~~~rD~~~e  236 (351)
T PRK05975        170 SWRAPLLRHRDRLEALRADVFP-LQFGG-AAGTLEKLGGK--------AAAVRARLAKRLGLEDAP-QW--HSQRDFIAD  236 (351)
T ss_pred             HHHHHHHHHHHHHHHHHHHhhh-cCCcc-HhccCccCCCc--------HHHHHHHHHHHhCcCCCc-ch--hhccHHHHH
Confidence            6899999999999999998874 24434 22233333210        112257999999997554 44  379999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHH--hccccccccccCCCCCccCCCCCCchHHHHHHHHHHHHHHHHHHHHHhhcccccc
Q psy14319         82 VTGVLSSLGASIHKLATDLRLLA--HMKEIEEPFESTQIGSSAMAYKRNPMRSERLCSLARFLMSLHQNSLATASTQWME  159 (486)
Q Consensus        82 ~~~~la~la~~LsRlA~DL~l~s--s~~el~e~~~~~~~GSSiMPqKrNP~~~E~ir~~a~~v~g~~~~~l~~~~~~~~e  159 (486)
                      ++++++.++++++|||+|+++|+  + +|+.+|+   ++|||||||||||+.+|++++.++.+.+.... +..+++.++|
T Consensus       237 ~~~~la~la~~l~kiA~Di~ll~s~e-gev~~~~---~~GSS~MPhKrNPv~~E~i~~~ar~~~~~~~~-~~~~~~~~~e  311 (351)
T PRK05975        237 FAHLLSLVTGSLGKFGQDIALMAQAG-DEISLSG---GGGSSAMPHKQNPVAAETLVTLARFNATQVSG-LHQALVHEQE  311 (351)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhCCC-CcccCCC---CCccCCCCCCcCcHHHHHHHHHHHHHHHHHHH-HHhcccchhc
Confidence            99999999999999999999999  6 8999986   48999999999999999999999999998875 5577899999


Q ss_pred             CCCchhhHhhhchHHHHHHHHHHHHHHHHhhhcccc
Q psy14319        160 RTLDDSANRRLTLSESFLTTDCLLITLQNVLEGLVV  195 (486)
Q Consensus       160 rDl~~~~~~~~~l~~a~~~~~~~l~~~~~vl~~l~v  195 (486)
                      ||...|..+|..+|+++.++..++..+..++++|++
T Consensus       312 r~~~~~~~e~~~lp~~~~~~~~~l~~~~~ll~~l~~  347 (351)
T PRK05975        312 RSGAAWTLEWMILPQMVAATGAALRLALELAGNIRR  347 (351)
T ss_pred             cCCchHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHh
Confidence            999999999999999999999999999999999875

>cd01357 Aspartase Aspartase

Probab=99.95  E-value=7e-27  Score=248.55  Aligned_cols=173  Identities=20%  Similarity=0.220  Sum_probs=136.7

Q ss_pred             HHHHHHHHHHHcCCCCC--ccccccccCccHHHHHHHHHHHHHHHHHHHHHHHHHHhh-----hhhccccccCCCCcCcC
Q psy14319        229 VKALDRLVTKKAGFTSS--HIITGQTYSRKVDVIVTGVLSSLGASIHKLATDLRLLAH-----MKEIEEPFESTQIGSSA  301 (486)
Q Consensus       229 ~~~i~~~lA~~LGf~~a--~~~~~~~~~rd~~~e~~~~l~~~~~~l~rla~Dl~l~ss-----~~el~~~~~~~~~GSSi  301 (486)
                      +..+.+.+++.|||..+  .|.++++++||++++++++++.++++|+|||+||++|+|     ||||.+|  .+++||||
T Consensus       238 ~~~v~~~~a~~LGl~~~~~~n~~~a~~~rd~~~e~~~~l~~~a~~L~riA~Di~l~ss~e~~~~gev~~p--~~~~GSSi  315 (450)
T cd01357         238 IELVVEKLSEITGLPLKRAENLIDATQNTDAFVEVSGALKRLAVKLSKIANDLRLLSSGPRAGLGEINLP--AVQPGSSI  315 (450)
T ss_pred             HHHHHHHHHHHhCCCCccCcCHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcCCceeEECC--CCCCcCCC
Confidence            57889999999999852  266788899999999999999999999999999999995     8999998  38999999


Q ss_pred             CCCCCCchHHHHHHHHHHHHHHHhHHHHHHhhhhHhhhcccccCCCCCCccccchhhhhhccCCcchhhhhhccCCCCcc
Q psy14319        302 MAYKRNPMRSERLCSLARFLMSLHQNSLATASTQWMERTLDDSANRFPTKSVFSCVTQVKQHGKENDLVDRIRADPYFAP  381 (486)
Q Consensus       302 MPqKrNP~~~E~~~~~a~~~~g~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~g~~~d~~~~~~~~~~~~~  381 (486)
                      |||||||+.+|+++++|+++.|...+++.......++                          ++.              
T Consensus       316 MPqKrNP~~~E~ir~~a~~v~g~~~~~~~~~~~~~~~--------------------------~~~--------------  355 (450)
T cd01357         316 MPGKVNPVIPEVVNQVAFQVIGNDLTITMAAEAGQLE--------------------------LNV--------------  355 (450)
T ss_pred             CCCCcCcHHHHHHHHHHHHHhhHHHHHHHHHhcCcch--------------------------hhc--------------
Confidence            9999999999999999999999998885532111000                          000              


Q ss_pred             ccccCCCCCCCccccCCchhHhhhhhhcccchH---HHHHHHHHHHHHH-HhchhCCeeCHHHHHHHHhccCChhHHHHH
Q psy14319        382 ILNQMPTLLDPKSFYGRAPEQQRLSAKGIHTLS---ESFLTTDCLLITL-QNVLEGLVVYPKVIQRHIDQELPFMATENI  457 (486)
Q Consensus       382 ~~~~~~~~~~p~~~~~~~~~q~~~~~~~~~~l~---~~~~~~~~~l~~~-~~~l~~l~v~~~~m~~~l~~~~~~~~a~~~  457 (486)
                                        .        +|..++   .++.++..++..+ ..++++|+||++||+++++.+.+  +++++
T Consensus       356 ------------------~--------~~~~~~~~~~~~~~~~~~l~~~~~~~l~~l~v~~erm~~~l~~~~~--~~t~L  407 (450)
T cd01357         356 ------------------F--------EPVIAYNLLESIDILTNAVRTLRERCIDGITANEERCREYVENSIG--IVTAL  407 (450)
T ss_pred             ------------------c--------hHHHHHHHHHHHHHHHHHHHHHHHHHHccCEECHHHHHHHHHhCcc--hHHHH
Confidence                              0        233344   4455999999999 59999999999999999988765  44666


Q ss_pred             HHHHHHcCCChHHHHHHHH
Q psy14319        458 IMAMVKAGGDRQVCHEKIR  476 (486)
Q Consensus       458 ~~~L~~~g~~fr~Ah~~v~  476 (486)
                      ++.|     +++.||+++.
T Consensus       408 a~~l-----g~~~a~~~~~  421 (450)
T cd01357         408 NPYI-----GYEAAAEIAK  421 (450)
T ss_pred             HHHH-----HHHHHHHHHH
Confidence            6655     2445555443

This subgroup contains Escherichia coli aspartase (L-aspartate ammonia-lyase), Bacillus aspartase and related proteins. It is a member of the Lyase class I family, which includes both aspartase (L-aspartate ammonia-lyase) and fumarase class II enzymes. Members of this family for the most part catalyze similar beta-elimination reactions in which a C-N or C-O bond is cleaved with the release of fumarate as one of the products. These proteins are active as tetramers. The four active sites of the homotetrameric enzyme are each formed by residues from three different subunits. Aspartase catalyzes the reversible deamination of aspartic acid.

>PRK14515 aspartate ammonia-lyase; Provisional

Probab=99.95  E-value=2.4e-27  Score=252.77  Aligned_cols=191  Identities=17%  Similarity=0.179  Sum_probs=145.7

Q ss_pred             hhhhhHhccHHHHHHHHHHHhhhcCCCceeecccCcccccchhhhhhhhhhhhHHHHHHcCCCCC--CCcccccccccHH
Q psy14319          2 KFYKYVLGDGDKVKALDRLVTKKAGFNSSHIITGQTYSRKVDVIVTGVLSSLGASIHKKAGFNSS--HIITGQTYSRKVD   79 (486)
Q Consensus         2 ~~~~~~~~d~~r~~~~~~~~~~~~g~~~~~a~~g~~~~r~~d~~~~Gt~a~~~~~~a~~LGf~~~--~~~~~av~~RD~~   79 (486)
                      +|++.|.||.+|++++.++++.. ++| ++|+ |+.++  +|+..   .+.+-..+++.+|+..+  .++.|++++||++
T Consensus       209 ~~a~~l~r~~~RL~~~~~~l~~~-pLG-~gAv-GT~~~--~~~~~---~~~~l~~la~~~gl~~~~~~n~~da~~~rd~~  280 (479)
T PRK14515        209 AYSRVLERDMKRIQQSRQHLYEV-NMG-ATAV-GTGLN--ADPEY---IEAVVKHLAAISELPLVGAEDLVDATQNTDAY  280 (479)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhhc-cCC-Cccc-cCCCC--CChhH---HHHHHHHHHHHhCCCCCCCcchHHHhcccHHH
Confidence            79999999999999999999853 442 5787 88886  77521   11222366777887644  3667999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHH---h--ccccccccccCCCCCccCCCCCCchHHHHHHHHHHHHHHHHHHHHHhhc
Q psy14319         80 VIVTGVLSSLGASIHKLATDLRLLA---H--MKEIEEPFESTQIGSSAMAYKRNPMRSERLCSLARFLMSLHQNSLATAS  154 (486)
Q Consensus        80 ~e~~~~la~la~~LsRlA~DL~l~s---s--~~el~e~~~~~~~GSSiMPqKrNP~~~E~ir~~a~~v~g~~~~~l~~~~  154 (486)
                      ++++++++.++++|+|||+||++|+   +  |+|+.+|+  +++|||||||||||+.+|.++++|+++.|+..++++...
T Consensus       281 ~e~~~~l~~la~~L~kiA~Dl~llsS~p~~g~~Ei~lp~--~~~GSSiMP~KrNP~~~E~i~~~a~~v~G~~~~~~~~~~  358 (479)
T PRK14515        281 TEVSAALKVCMMNMSKIANDLRLMASGPRVGLAEIMLPA--RQPGSSIMPGKVNPVMPEVINQIAFQVIGNDHTICLASE  358 (479)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHcCCCcCCeeEEeCCC--CCCCcCCCCcccCchHHHHHHHHHHHHHhHHHHHHHHHh
Confidence            9999999999999999999999999   3  77888887  589999999999999999999999999999987664432


Q ss_pred             cccccCCCchhhHhhhchHHHHHHHHHHH-HHHHHhhhccccCHHhhhhh
Q psy14319        155 TQWMERTLDDSANRRLTLSESFLTTDCLL-ITLQNVLEGLVVYPKETYSI  203 (486)
Q Consensus       155 ~~~~erDl~~~~~~~~~l~~a~~~~~~~l-~~~~~vl~~l~vn~erm~~~  203 (486)
                      ...++...-.... ...+++++..+..++ .+...|+++|+||++||++.
T Consensus       359 ~~~le~n~~~p~i-~~~l~~si~~l~~al~~~~~~~l~gl~vn~erm~~~  407 (479)
T PRK14515        359 AGQLELNVMEPVL-VFNLLQSISIMNNGFRAFTDNCLKGIEANEDRLKEY  407 (479)
T ss_pred             cccHHHHHhcchh-HHHHHHHHHHHHHHHHHHHHHHHccCEECHHHHHHH
Confidence            2222222100000 012445566888888 55556999999999999983

>cd01362 Fumarase_classII Class II fumarases

Probab=99.95  E-value=2e-26  Score=245.16  Aligned_cols=180  Identities=18%  Similarity=0.180  Sum_probs=146.4

Q ss_pred             HHHHHHHHHHHcCCCC-C-ccccccccCccHHHHHHHHHHHHHHHHHHHHHHHHHHhh-----hhhccccccCCCCcCcC
Q psy14319        229 VKALDRLVTKKAGFTS-S-HIITGQTYSRKVDVIVTGVLSSLGASIHKLATDLRLLAH-----MKEIEEPFESTQIGSSA  301 (486)
Q Consensus       229 ~~~i~~~lA~~LGf~~-a-~~~~~~~~~rd~~~e~~~~l~~~~~~l~rla~Dl~l~ss-----~~el~~~~~~~~~GSSi  301 (486)
                      +..+.+.+++.|||.. + .+..+++++||+++|++++++.++.+++|||+||++|+|     ||||.+|+  +++||||
T Consensus       239 ~~~v~~~~a~~LGl~~~~~~n~~da~~~rD~~~e~~~~l~~la~~l~ria~Dl~~~~s~~~~e~gev~~~~--~~~GSS~  316 (455)
T cd01362         239 AEKVAAELAELTGLPFVTAPNKFEALAAHDALVEASGALKTLAVSLMKIANDIRWLGSGPRCGLGELSLPE--NEPGSSI  316 (455)
T ss_pred             HHHHHHHHHHHhCCCCccCCCHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHccCccCCCceEECCC--CCCCCCC
Confidence            4678889999999995 3 245667899999999999999999999999999999994     89999986  6899999


Q ss_pred             CCCCCCchHHHHHHHHHHHHHHHhHHHHHHhhhhHhhhcccccCCCCCCccccchhhhhhccCCcchhhhhhccCCCCcc
Q psy14319        302 MAYKRNPMRSERLCSLARFLMSLHQNSLATASTQWMERTLDDSANRFPTKSVFSCVTQVKQHGKENDLVDRIRADPYFAP  381 (486)
Q Consensus       302 MPqKrNP~~~E~~~~~a~~~~g~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~g~~~d~~~~~~~~~~~~~  381 (486)
                      |||||||+.+|+++++++++.|.+.+++.....+                                         +|.. 
T Consensus       317 MPqKrNP~~~E~ir~~a~~~~g~~~~~~~~~~~~-----------------------------------------~~~~-  354 (455)
T cd01362         317 MPGKVNPTQCEALTMVAAQVMGNDAAITIAGSSG-----------------------------------------NFEL-  354 (455)
T ss_pred             CCCCCCcHHHHHHHHHHHHHhhhHHHHHHHHhcC-----------------------------------------chhh-
Confidence            9999999999999999999999999888653211                                         1111 


Q ss_pred             ccccCCCCCCCccccCCchhHhhhhhhcccchHHHHHHHHHHHHHHHhchhCCeeCHHHHHHHHhccCChhHHHHHHHHH
Q psy14319        382 ILNQMPTLLDPKSFYGRAPEQQRLSAKGIHTLSESFLTTDCLLITLQNVLEGLVVYPKVIQRHIDQELPFMATENIIMAM  461 (486)
Q Consensus       382 ~~~~~~~~~~p~~~~~~~~~q~~~~~~~~~~l~~~~~~~~~~l~~~~~~l~~l~v~~~~m~~~l~~~~~~~~a~~~~~~L  461 (486)
                            +..+|.              ..|..++.++.+...++.++..++++|+||++||+++++.+.+.  +    +.|
T Consensus       355 ------~~~~~~--------------~~~~~l~~~~~~~~~~~~~~~~~l~~L~v~~~rm~~~l~~~~~~--~----~~L  408 (455)
T cd01362         355 ------NVFKPV--------------IIYNLLQSIRLLADACRSFADKCVAGIEPNRERIAELLERSLML--V----TAL  408 (455)
T ss_pred             ------hhcchH--------------HHHHHHHHHHHHHHHHHHHHHHHHccCEECHHHHHHHHHhcchh--H----HHh
Confidence                  000010              12668889999999988888899999999999999999887653  3    445


Q ss_pred             HHcCCChHHHHHHHHHHH
Q psy14319        462 VKAGGDRQVCHEKIRVLS  479 (486)
Q Consensus       462 ~~~g~~fr~Ah~~v~~~~  479 (486)
                      ++ ++|||+||++++++.
T Consensus       409 a~-~ig~~~A~~l~~~a~  425 (455)
T cd01362         409 NP-HIGYDKAAKIAKKAH  425 (455)
T ss_pred             cc-ccCHHHHHHHHHHHH
Confidence            54 499999999966553

This subgroup contains Escherichia coli fumarase C, human mitochondrial fumarase, and related proteins. It is a member of the Lyase class I family. Members of this family for the most part catalyze similar beta-elimination reactions in which a C-N or C-O bond is cleaved with the release of fumarate as one of the products. These proteins are active as tetramers. The four active sites of the homotetrameric enzyme are each formed by residues from three different subunits. Fumarase catalyzes the reversible hydration/dehydration of fumarate to L-malate during the Krebs cycle.

>PRK14515 aspartate ammonia-lyase; Provisional

Probab=99.94  E-value=5.4e-26  Score=242.50  Aligned_cols=180  Identities=19%  Similarity=0.211  Sum_probs=136.5

Q ss_pred             HHHHHHHHHHHcCCCCC--ccccccccCccHHHHHHHHHHHHHHHHHHHHHHHHHHhh-----hhhccccccCCCCcCcC
Q psy14319        229 VKALDRLVTKKAGFTSS--HIITGQTYSRKVDVIVTGVLSSLGASIHKLATDLRLLAH-----MKEIEEPFESTQIGSSA  301 (486)
Q Consensus       229 ~~~i~~~lA~~LGf~~a--~~~~~~~~~rd~~~e~~~~l~~~~~~l~rla~Dl~l~ss-----~~el~~~~~~~~~GSSi  301 (486)
                      ...+...+++.+|+..+  .|.++++++||++++++++|+.++.+|+|||+||++|+|     |+|+.+|+  .++||||
T Consensus       249 ~~~~l~~la~~~gl~~~~~~n~~da~~~rd~~~e~~~~l~~la~~L~kiA~Dl~llsS~p~~g~~Ei~lp~--~~~GSSi  326 (479)
T PRK14515        249 IEAVVKHLAAISELPLVGAEDLVDATQNTDAYTEVSAALKVCMMNMSKIANDLRLMASGPRVGLAEIMLPA--RQPGSSI  326 (479)
T ss_pred             HHHHHHHHHHHhCCCCCCCcchHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcCCeeEEeCCC--CCCCcCC
Confidence            45777788888998643  267788899999999999999999999999999999995     66788876  5999999


Q ss_pred             CCCCCCchHHHHHHHHHHHHHHHhHHHHHHhhhhHhhhcccccCCCCCCccccchhhhhhccCCcchhhhhhccCCCCcc
Q psy14319        302 MAYKRNPMRSERLCSLARFLMSLHQNSLATASTQWMERTLDDSANRFPTKSVFSCVTQVKQHGKENDLVDRIRADPYFAP  381 (486)
Q Consensus       302 MPqKrNP~~~E~~~~~a~~~~g~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~g~~~d~~~~~~~~~~~~~  381 (486)
                      |||||||+.+|+++++|+++.|+..+++.......+|.                                          
T Consensus       327 MP~KrNP~~~E~i~~~a~~v~G~~~~~~~~~~~~~le~------------------------------------------  364 (479)
T PRK14515        327 MPGKVNPVMPEVINQIAFQVIGNDHTICLASEAGQLEL------------------------------------------  364 (479)
T ss_pred             CCcccCchHHHHHHHHHHHHHhHHHHHHHHHhcccHHH------------------------------------------
Confidence            99999999999999999999999998885432111111                                          


Q ss_pred             ccccCCCCCCCccccCCchhHhhhhhhcccchHHHHHHHHHHH-HHHHhchhCCeeCHHHHHHHHhccCChhHHHHHHHH
Q psy14319        382 ILNQMPTLLDPKSFYGRAPEQQRLSAKGIHTLSESFLTTDCLL-ITLQNVLEGLVVYPKVIQRHIDQELPFMATENIIMA  460 (486)
Q Consensus       382 ~~~~~~~~~~p~~~~~~~~~q~~~~~~~~~~l~~~~~~~~~~l-~~~~~~l~~l~v~~~~m~~~l~~~~~~~~a~~~~~~  460 (486)
                            +.+.|...               ..+.+++.++..++ .+...|+++|+||++||+++++.+.+++      ..
T Consensus       365 ------n~~~p~i~---------------~~l~~si~~l~~al~~~~~~~l~gl~vn~erm~~~l~~s~~l~------t~  417 (479)
T PRK14515        365 ------NVMEPVLV---------------FNLLQSISIMNNGFRAFTDNCLKGIEANEDRLKEYVEKSVGII------TA  417 (479)
T ss_pred             ------HHhcchhH---------------HHHHHHHHHHHHHHHHHHHHHHccCEECHHHHHHHHHhCccHH------HH
Confidence                  11122211               13445566788888 5566699999999999999999887643      34


Q ss_pred             HHHcCCChHHHHHHHHHHHHHhhh
Q psy14319        461 MVKAGGDRQVCHEKIRVLSHQAGA  484 (486)
Q Consensus       461 L~~~g~~fr~Ah~~v~~~~~~a~~  484 (486)
                      |+++ +|    |+.|++++++|.+
T Consensus       418 La~~-iG----~~~v~~~a~~A~~  436 (479)
T PRK14515        418 VNPH-IG----YEAAARVAKEAIA  436 (479)
T ss_pred             hcch-hc----HHHHHHHHHHHHH
Confidence            5554 66    4556666666554

>TIGR00839 aspA aspartate ammonia-lyase

Probab=99.94  E-value=1.1e-25  Score=239.92  Aligned_cols=177  Identities=16%  Similarity=0.189  Sum_probs=136.8

Q ss_pred             HHHHHHHHHHHcCCCCCc--cccccccCccHHHHHHHHHHHHHHHHHHHHHHHHHHhh-----hhhccccccCCCCcCcC
Q psy14319        229 VKALDRLVTKKAGFTSSH--IITGQTYSRKVDVIVTGVLSSLGASIHKLATDLRLLAH-----MKEIEEPFESTQIGSSA  301 (486)
Q Consensus       229 ~~~i~~~lA~~LGf~~a~--~~~~~~~~rd~~~e~~~~l~~~~~~l~rla~Dl~l~ss-----~~el~~~~~~~~~GSSi  301 (486)
                      ++.+++.+++.|||..+.  |..+++++||+++|++++++.++++|+|||+||++|+|     +|||.+|  .+++||||
T Consensus       241 ~~~v~~~~a~~LGl~~~~~~n~~da~~~rd~~~e~~~~l~~la~~L~ria~Dl~l~~s~~~~~~~ev~~~--~~~~gSS~  318 (468)
T TIGR00839       241 SPLVVKKLAEVTGLPCVPAENLIEATSDCGAYVMVHGALKRLAVKMSKICNDLRLLSSGPRAGLNEINLP--ELQAGSSI  318 (468)
T ss_pred             HHHHHHHHHHHhCCCCCCCccHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcCCceEEeCC--CCCCCCCC
Confidence            578899999999999752  55667899999999999999999999999999999995     7889987  48999999


Q ss_pred             CCCCCCchHHHHHHHHHHHHHHHhHHHHHHhhhhHhhhcccccCCCCCCccccchhhhhhccCCcchhhhhhccCCCCcc
Q psy14319        302 MAYKRNPMRSERLCSLARFLMSLHQNSLATASTQWMERTLDDSANRFPTKSVFSCVTQVKQHGKENDLVDRIRADPYFAP  381 (486)
Q Consensus       302 MPqKrNP~~~E~~~~~a~~~~g~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~g~~~d~~~~~~~~~~~~~  381 (486)
                      |||||||+.+|+++++++++.|....++.+.....++    .|                                     
T Consensus       319 MPqKrNP~~~E~ir~~a~~~~g~~~~~~~~~~~~~~~----~~-------------------------------------  357 (468)
T TIGR00839       319 MPAKVNPVVPEVVNQVCFKVIGNDTTVTLAAEAGQLQ----LN-------------------------------------  357 (468)
T ss_pred             CCCCcCcHHHHHHHHHHHHHHhHHHHHHHHHhcCChH----hh-------------------------------------
Confidence            9999999999999999999999999886542211110    00                                     


Q ss_pred             ccccCCCCCCCccccCCchhHhhhhhhcccchHHH----HHHHHHHHHHHHhchhCCeeCHHHHHHHHhccCChhHHHHH
Q psy14319        382 ILNQMPTLLDPKSFYGRAPEQQRLSAKGIHTLSES----FLTTDCLLITLQNVLEGLVVYPKVIQRHIDQELPFMATENI  457 (486)
Q Consensus       382 ~~~~~~~~~~p~~~~~~~~~q~~~~~~~~~~l~~~----~~~~~~~l~~~~~~l~~l~v~~~~m~~~l~~~~~~~~a~~~  457 (486)
                                               .-+|..++++    ..+..++...+..++++++||++||+++++.+.+  ++   
T Consensus       358 -------------------------~~e~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~vn~erm~~~l~~~~~--~~---  407 (468)
T TIGR00839       358 -------------------------VMEPVIGQAMFESIHILTNACYNLTDKCVNGITANKEICEGYVFNSIG--IV---  407 (468)
T ss_pred             -------------------------hhhHHHHHHHHHHHHHHHHHHHHHHHHHHccCEECHHHHHHHHHHhHH--HH---
Confidence                                     0023344444    5556666667899999999999999999986655  32   


Q ss_pred             HHHHHHcCCChHHHHHHHHHHHHHhhh
Q psy14319        458 IMAMVKAGGDRQVCHEKIRVLSHQAGA  484 (486)
Q Consensus       458 ~~~L~~~g~~fr~Ah~~v~~~~~~a~~  484 (486)
                       +.|+    || -+|+.++++++++.+
T Consensus       408 -~~La----~~-~g~~~a~~~~~~a~~  428 (468)
T TIGR00839       408 -TYLN----PF-IGHHNGDIVGKICAE  428 (468)
T ss_pred             -HHHh----hH-hhHHHHHHHHHHHHH
Confidence             4454    44 366666666666654

Fumarate hydratase scores as high as 570 bits against this model.

>TIGR02426 protocat_pcaB 3-carboxy-cis,cis-muconate cycloisomerase

Probab=99.92  E-value=1.4e-24  Score=223.44  Aligned_cols=138  Identities=28%  Similarity=0.227  Sum_probs=123.0

Q ss_pred             HHHHHHHHHHHcCCCCCccccccccCccHHHHHHHHHHHHHHHHHHHHHHHHHHhh--hhhccccccCCCCcCcCCCCCC
Q psy14319        229 VKALDRLVTKKAGFTSSHIITGQTYSRKVDVIVTGVLSSLGASIHKLATDLRLLAH--MKEIEEPFESTQIGSSAMAYKR  306 (486)
Q Consensus       229 ~~~i~~~lA~~LGf~~a~~~~~~~~~rd~~~e~~~~l~~~~~~l~rla~Dl~l~ss--~~el~~~~~~~~~GSSiMPqKr  306 (486)
                      +..+++++++.|||..+.  ..++++||+++|++++++.++.+++|||+||++|++  |||+.+++   ++|||||||||
T Consensus       199 ~~~v~~~~a~~LGl~~~~--~~~~~~rd~~~e~~~~l~~la~~l~ria~Dl~l~s~~e~gei~~~~---~~GSSiMPqK~  273 (338)
T TIGR02426       199 GGAVAAALAARLGLPLPA--LPWHTQRDRIAEFGSALALVAGALGKIAGDIALLSQTEVGEVFEAG---GGGSSAMPHKR  273 (338)
T ss_pred             HHHHHHHHHHHhCcCCCC--CcchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCChhhhCC---CCCcccCCCCC
Confidence            467799999999999863  236799999999999999999999999999999998  99998743   69999999999


Q ss_pred             CchHHHHHHHHHHHHHHHhHHHHHHhhhhHhhhcccccCCCCCCccccchhhhhhccCCcchhhhhhccCCCCccccccC
Q psy14319        307 NPMRSERLCSLARFLMSLHQNSLATASTQWMERTLDDSANRFPTKSVFSCVTQVKQHGKENDLVDRIRADPYFAPILNQM  386 (486)
Q Consensus       307 NP~~~E~~~~~a~~~~g~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~g~~~d~~~~~~~~~~~~~~~~~~  386 (486)
                      ||+.+|+++++|+.+.|....++.. +..|+|||...|..                                        
T Consensus       274 NP~~~E~i~~~a~~~~g~~~~~~~~-~~~~~Er~~~~~~~----------------------------------------  312 (338)
T TIGR02426       274 NPVGAALLAAAARRVPGLAATLHAA-LPQEHERSLGGWHA----------------------------------------  312 (338)
T ss_pred             CcHHHHHHHHHHHHHHHHHHHHHHh-chHhhccCCCchHH----------------------------------------
Confidence            9999999999999999999888655 78999999875531                                        


Q ss_pred             CCCCCCccccCCchhHhhhhhhcccchHHHHHHHHHHHHHHHhchhCC
Q psy14319        387 PTLLDPKSFYGRAPEQQRLSAKGIHTLSESFLTTDCLLITLQNVLEGL  434 (486)
Q Consensus       387 ~~~~~p~~~~~~~~~q~~~~~~~~~~l~~~~~~~~~~l~~~~~~l~~l  434 (486)
                                            +|..+++++.++++++..+..++++|
T Consensus       313 ----------------------e~~~lp~~~~~~~~~l~~~~~~l~~l  338 (338)
T TIGR02426       313 ----------------------EWETLPELVRLTGGALRQAQVLAEGL  338 (338)
T ss_pred             ----------------------HHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence                                  57799999999999999999998875

Members of this family are 3-carboxy-cis,cis-muconate cycloisomerase, the enzyme the catalyzes the second step in the protocatechuate degradation to beta-ketoadipate and then to succinyl-CoA and acetyl-CoA. 4-hydroxybenzoate, 3-hydroxybenzoate, and vanillate all can be converted in one step to protocatechuate. All members of the seed alignment for this model were chosen from within protocatechuate degradation operons of at least three genes of the pathway, from genomes with the complete pathway through beta-ketoadipate.

>PRK04833 argininosuccinate lyase; Provisional

Probab=99.92  E-value=1e-24  Score=232.36  Aligned_cols=188  Identities=18%  Similarity=0.091  Sum_probs=160.1

Q ss_pred             HHHHHHHHHHcCCCCCc-cccccccCccHHHHHHHHHHHHHHHHHHHHHHHHHHhh--hhhccccccCCCCcCcCCCCCC
Q psy14319        230 KALDRLVTKKAGFTSSH-IITGQTYSRKVDVIVTGVLSSLGASIHKLATDLRLLAH--MKEIEEPFESTQIGSSAMAYKR  306 (486)
Q Consensus       230 ~~i~~~lA~~LGf~~a~-~~~~~~~~rd~~~e~~~~l~~~~~~l~rla~Dl~l~ss--~~el~~~~~~~~~GSSiMPqKr  306 (486)
                      +..++++++.|||..+. |..+++++||+++|++++++.++++|+|||+||++|++  ||.++.+ ++.++|||||||||
T Consensus       206 ~~dr~~~a~~LGf~~~~~n~~~a~~~rd~~~e~~~~l~~~a~~L~ria~Dl~l~ss~e~g~~el~-~~~~~gSSiMPqKr  284 (455)
T PRK04833        206 EIDREQLAGWLGFASATRNSLDSVSDRDHVLELLSDASISMVHLSRFAEDLIFFNSGEAGFVELS-DRVTSGSSLMPQKK  284 (455)
T ss_pred             CCCHHHHHHHhCCCCCCCCHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCceeeC-CCCCCCcccCCCCC
Confidence            34478999999999865 44667999999999999999999999999999999998  7744433 45679999999999


Q ss_pred             CchHHHHHHHHHHHHHHHhHHHHHHh--hhhHhhhcccccCCCCCCccccchhhhhhccCCcchhhhhhccCCCCccccc
Q psy14319        307 NPMRSERLCSLARFLMSLHQNSLATA--STQWMERTLDDSANRFPTKSVFSCVTQVKQHGKENDLVDRIRADPYFAPILN  384 (486)
Q Consensus       307 NP~~~E~~~~~a~~~~g~~~~~~~~~--~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~g~~~d~~~~~~~~~~~~~~~~  384 (486)
                      ||+.+|+++++++++.|..++++...  ...++                            ++|+               
T Consensus       285 NP~~~E~ir~~a~~~~g~~~~~~~~~~~~~~~~----------------------------~rd~---------------  321 (455)
T PRK04833        285 NPDALELIRGKCGRVQGALTGMLMTLKGLPLAY----------------------------NKDM---------------  321 (455)
T ss_pred             CChHHHHHHHHHHHHHhhHHHHHHHHhCChHHH----------------------------hhhh---------------
Confidence            99999999999999999999887543  12223                            3333               


Q ss_pred             cCCCCCCCccccCCchhHhhhhhhcccchHHHHHHHHHHHHHHHhchhCCeeCHHHHHHHHhccCChhHHHHHHHHHHHc
Q psy14319        385 QMPTLLDPKSFYGRAPEQQRLSAKGIHTLSESFLTTDCLLITLQNVLEGLVVYPKVIQRHIDQELPFMATENIIMAMVKA  464 (486)
Q Consensus       385 ~~~~~~~p~~~~~~~~~q~~~~~~~~~~l~~~~~~~~~~l~~~~~~l~~l~v~~~~m~~~l~~~~~~~~a~~~~~~L~~~  464 (486)
                                       |++.     ..+++++..+..++.++..++++++||+++|++++.  .|+++++++|+.|+++
T Consensus       322 -----------------~~~~-----~~l~~~~~~~~~~l~~~~~~l~~l~v~~~rm~~~~~--~g~~~a~~~a~~L~~~  377 (455)
T PRK04833        322 -----------------QEDK-----EGLFDALDTWLDCLHMAALVLDGIQVKRPRCQEAAQ--QGYANATELADYLVAK  377 (455)
T ss_pred             -----------------hhhH-----HHHHHHHHHHHHHHHHHHHHHhhCeECHHHHHHHHH--ccHHHHHHHHHHHHHc
Confidence                             2222     368899999999999999999999999999999965  4789999999999999


Q ss_pred             CCChHHHHHHHHHHHHHhhhc
Q psy14319        465 GGDRQVCHEKIRVLSHQAGAQ  485 (486)
Q Consensus       465 g~~fr~Ah~~v~~~~~~a~~~  485 (486)
                      |+|||+||++|+++++++.++
T Consensus       378 g~~~r~Ah~~v~~~~~~a~~~  398 (455)
T PRK04833        378 GVPFREAHHIVGEAVVEAIRQ  398 (455)
T ss_pred             CCCHHHHHHHHHHHHHHHHHc
Confidence            999999999999999998764

>cd01334 Lyase_I Lyase class I family; a group of proteins which catalyze similar beta-elimination reactions

Probab=99.92  E-value=1.1e-24  Score=223.08  Aligned_cols=144  Identities=31%  Similarity=0.266  Sum_probs=125.1

Q ss_pred             HHHHHHHHHHcCC-CCCccccccccCccHHHHHHHHHHHHHHHHHHHHHHHHHHhh--hhhccccccCCCCcCcCCCCCC
Q psy14319        230 KALDRLVTKKAGF-TSSHIITGQTYSRKVDVIVTGVLSSLGASIHKLATDLRLLAH--MKEIEEPFESTQIGSSAMAYKR  306 (486)
Q Consensus       230 ~~i~~~lA~~LGf-~~a~~~~~~~~~rd~~~e~~~~l~~~~~~l~rla~Dl~l~ss--~~el~~~~~~~~~GSSiMPqKr  306 (486)
                      +.+++++++.||| ..+.+...++++||+++|++++++.++++++|||+|+++|++  |||+.+|+.. ++|||||||||
T Consensus       179 ~~~~~~~a~~LG~~~~~~~~~~a~~~rd~~~e~~~~l~~~~~~l~ria~Dl~~~~~~e~gev~~~~~~-~~gSS~MP~Kr  257 (325)
T cd01334         179 PIDRERVAELLGFFGPAPNSTQAVSDRDFLVELLSALALLAVSLSKIANDLRLLSSGEFGEVELPDAK-QPGSSIMPQKV  257 (325)
T ss_pred             cchHHHHHHHhcCcCcCcCHHHHHhCcHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCeEECCCCC-CCCcccCCCCC
Confidence            8899999999999 444333345899999999999999999999999999999999  9999999766 99999999999


Q ss_pred             CchHHHHHHHHHHHHHHHhHHHHHHhhhhHhhhcccccCCCCCCccccchhhhhhccCCcchhhhhhccCCCCccccccC
Q psy14319        307 NPMRSERLCSLARFLMSLHQNSLATASTQWMERTLDDSANRFPTKSVFSCVTQVKQHGKENDLVDRIRADPYFAPILNQM  386 (486)
Q Consensus       307 NP~~~E~~~~~a~~~~g~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~g~~~d~~~~~~~~~~~~~~~~~~  386 (486)
                      ||+.+|+++++++++.|...+++.. ..++++++..+|                                          
T Consensus       258 NP~~~E~i~~~a~~~~g~~~~~~~~-~~~~~~~~~~~~------------------------------------------  294 (325)
T cd01334         258 NPVILELVRGLAGRVIGNLAALLEA-LKGGPLEDNVDS------------------------------------------  294 (325)
T ss_pred             CCHHHHHHHHHHHHHhhHHHHHHHH-HhcCchhhhccc------------------------------------------
Confidence            9999999999999999999888766 445555544332                                          


Q ss_pred             CCCCCCccccCCchhHhhhhhhcccchHHHHHHHHHHHHHHHhchhCCeeC
Q psy14319        387 PTLLDPKSFYGRAPEQQRLSAKGIHTLSESFLTTDCLLITLQNVLEGLVVY  437 (486)
Q Consensus       387 ~~~~~p~~~~~~~~~q~~~~~~~~~~l~~~~~~~~~~l~~~~~~l~~l~v~  437 (486)
                                          ..+|..+++++..+..++..+..++++|+||
T Consensus       295 --------------------~~~~~~l~~~~~~~~~~l~~~~~~~~~l~v~  325 (325)
T cd01334         295 --------------------PVEREALPDSFDLLDAALRLLTGVLEGLEVN  325 (325)
T ss_pred             --------------------HHHHHHHHHHHHHHHHHHHHHHHHhCcCEeC
Confidence                                1246799999999999999999999999986

The Lyase class I family contains class II fumarase, aspartase, adenylosuccinate lyase (ASL), argininosuccinate lyase (ASAL), prokaryotic-type 3-carboxy-cis,cis-muconate cycloisomerase (pCMLE), and related proteins. It belongs to the Lyase_I superfamily. Proteins of this family for the most part catalyze similar beta-elimination reactions in which a C-N or C-O bond is cleaved with the release of fumarate as one of the products. These proteins are active as tetramers. The four active sites of the homotetrameric enzyme are each formed by residues from three different subunits.

>COG0114 FumC Fumarase [Energy production and conversion]

Probab=99.91  E-value=7.1e-24  Score=214.17  Aligned_cols=211  Identities=18%  Similarity=0.187  Sum_probs=171.5

Q ss_pred             hccccCHHhhhhhhcCCCCCCcccccccccCCCCCCCcHHHHHHHHHHHcCC--CCCccccccccCccHHHHHHHHHHHH
Q psy14319        191 EGLVVYPKETYSIRIIPDNRLSSHHTTKRSGRPGDGDKVKALDRLVTKKAGF--TSSHIITGQTYSRKVDVIVTGVLSSL  268 (486)
Q Consensus       191 ~~l~vn~erm~~~~~~~~~~g~~~~~~~~~~~~~~g~~~~~i~~~lA~~LGf--~~a~~~~~~~~~rd~~~e~~~~l~~~  268 (486)
                      ..++---+.+.++.+.+-++||.        ++....-+..+.+.+++..|+  ..+.|.+.+.+++|.+++++++|..+
T Consensus       212 ~~i~~~l~~l~eLAiGGTAVGTG--------lNa~p~f~ekva~~i~~~TG~~F~~a~NkF~al~~hd~lv~~~Gal~~l  283 (462)
T COG0114         212 ERIEASLPHLYELAIGGTAVGTG--------LNAHPEFGEKVAEELAELTGLPFVTAPNKFEALAAHDALVEASGALRTL  283 (462)
T ss_pred             HHHHHHHHHHHHHccCCcccccC--------cCCCccHHHHHHHHHHHHhCCCcccCCcHHHHHhcchHHHHHhHHHHHH
Confidence            33333334455555566677774        455666688889999987665  45558899999999999999999999


Q ss_pred             HHHHHHHHHHHHHHhh-----hhhccccccCCCCcCcCCCCCCCchHHHHHHHHHHHHHHHhHHHHHHhhhhHhhhcccc
Q psy14319        269 GASIHKLATDLRLLAH-----MKEIEEPFESTQIGSSAMAYKRNPMRSERLCSLARFLMSLHQNSLATASTQWMERTLDD  343 (486)
Q Consensus       269 ~~~l~rla~Dl~l~ss-----~~el~~~~~~~~~GSSiMPqKrNP~~~E~~~~~a~~~~g~~~~~~~~~~~~~~e~~~~~  343 (486)
                      +.+|.|||+|||+|.|     +|||..|  +.++||||||+|+||+.+|.+.+.|.+++|+.+++.++.+.+.||     
T Consensus       284 A~~L~KIAnDiR~l~SGPr~GLgEi~lP--enePGSSIMPGKVNPtq~EA~tmv~~QV~Gnd~ai~~ags~GnFE-----  356 (462)
T COG0114         284 AVSLMKIANDIRWLGSGPRCGLGEIELP--ENEPGSSIMPGKVNPTQCEALTMVAAQVIGNDAAIAFAGSQGNFE-----  356 (462)
T ss_pred             HHHHHHHHHHHHHHhcCCCCCccccccC--CCCCCccCCCCCCCchhHHHHHHHHHHHHcchHHHHHhhccCcee-----
Confidence            9999999999999999     9999965  789999999999999999999999999999999998886544333     


Q ss_pred             cCCCCCCccccchhhhhhccCCcchhhhhhccCCCCccccccCCCCCCCccccCCchhHhhhhhhcccchHHHHHHHHHH
Q psy14319        344 SANRFPTKSVFSCVTQVKQHGKENDLVDRIRADPYFAPILNQMPTLLDPKSFYGRAPEQQRLSAKGIHTLSESFLTTDCL  423 (486)
Q Consensus       344 ~~~~~~~~~~~~~~~~~~~~g~~~d~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~q~~~~~~~~~~l~~~~~~~~~~  423 (486)
                                               |                  +|+.|...              |+.|.++-.+++++
T Consensus       357 -------------------------L------------------Nv~~Pvi~--------------~N~LqS~~LLada~  379 (462)
T COG0114         357 -------------------------L------------------NVFKPVIA--------------YNFLQSVRLLADAM  379 (462)
T ss_pred             -------------------------e------------------ccccHHHH--------------HHHHHHHHHHHHHH
Confidence                                     3                  55666654              46899999999999


Q ss_pred             HHHHHhchhCCeeCHHHHHHHHhccCChhHHHHHHHHHHHcCCChHHHHHHHHHHHH
Q psy14319        424 LITLQNVLEGLVVYPKVIQRHIDQELPFMATENIIMAMVKAGGDRQVCHEKIRVLSH  480 (486)
Q Consensus       424 l~~~~~~l~~l~v~~~~m~~~l~~~~~~~~a~~~~~~L~~~g~~fr~Ah~~v~~~~~  480 (486)
                      ..+...|+.||++|+++|+++++.+..+      +.+|.++ ++++.|-++.+.+-+
T Consensus       380 ~~f~~~ci~gie~n~~~i~~~l~~SlmL------VTaLnp~-IGYdkAa~IAK~A~k  429 (462)
T COG0114         380 RSFADHCIVGIEPNEERIKELLERSLML------VTALNPH-IGYDKAAKIAKKAHK  429 (462)
T ss_pred             HHHHHHHhhccccCHHHHHHHHhhCchH------HHhcccc-cchHHHHHHHHHHHH
Confidence            9999999999999999999999887543      3467778 778888777766543

>PLN02646 argininosuccinate lyase

Probab=99.91  E-value=2.2e-24  Score=230.60  Aligned_cols=191  Identities=17%  Similarity=0.157  Sum_probs=167.7

Q ss_pred             HHHHHHHHHHHcCCCCCc-cccccccCccHHHHHHHHHHHHHHHHHHHHHHHHHHhh--hhhccccccCCCCcCcCCCCC
Q psy14319        229 VKALDRLVTKKAGFTSSH-IITGQTYSRKVDVIVTGVLSSLGASIHKLATDLRLLAH--MKEIEEPFESTQIGSSAMAYK  305 (486)
Q Consensus       229 ~~~i~~~lA~~LGf~~a~-~~~~~~~~rd~~~e~~~~l~~~~~~l~rla~Dl~l~ss--~~el~~~~~~~~~GSSiMPqK  305 (486)
                      .+..++++++.|||..+. |..+++++||+++|++++++.++.+|+|||+||++|++  ||++.+| +++++||||||||
T Consensus       219 ~~idr~~~A~~LGf~~~~~n~~da~~~RD~~~e~~~~la~ia~~LsRia~Dl~l~ss~e~g~v~~~-d~~~~GSSiMPqK  297 (474)
T PLN02646        219 LPIDRFMTAKDLGFTAPMRNSIDAVSDRDFVLEFLFANSITAIHLSRLGEEWVLWASEEFGFVTPS-DAVSTGSSIMPQK  297 (474)
T ss_pred             CCCCHHHHHHHhCCCCCCCChHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCeeeeC-CCCCCCcCCCCCC
Confidence            455588999999998765 55678999999999999999999999999999999999  9999997 7899999999999


Q ss_pred             CCchHHHHHHHHHHHHHHHhHHHHHHhhhhHhhhcccccCCCCCCccccchhhhhhccCCcchhhhhhccCCCCcccccc
Q psy14319        306 RNPMRSERLCSLARFLMSLHQNSLATASTQWMERTLDDSANRFPTKSVFSCVTQVKQHGKENDLVDRIRADPYFAPILNQ  385 (486)
Q Consensus       306 rNP~~~E~~~~~a~~~~g~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~g~~~d~~~~~~~~~~~~~~~~~  385 (486)
                      |||+.+|++|++++++.|++.+++....      +++                    .++++|+                
T Consensus       298 rNP~~~E~ir~~a~~v~G~~~~~~~~~~------~~p--------------------~~~~rD~----------------  335 (474)
T PLN02646        298 KNPDPMELVRGKSARVIGDLVTVLALCK------GLP--------------------TAYNRDL----------------  335 (474)
T ss_pred             CCCHHHHHHHHHHHHHHhhhHHHHHHhc------CCc--------------------hHhhcch----------------
Confidence            9999999999999999999998875531      111                    1233333                


Q ss_pred             CCCCCCCccccCCchhHhhhhhhcccchHHHHHHHHHHHHHHHhchhCCeeCHHHHHHHHhccCChhHHHHHHHHHHHcC
Q psy14319        386 MPTLLDPKSFYGRAPEQQRLSAKGIHTLSESFLTTDCLLITLQNVLEGLVVYPKVIQRHIDQELPFMATENIIMAMVKAG  465 (486)
Q Consensus       386 ~~~~~~p~~~~~~~~~q~~~~~~~~~~l~~~~~~~~~~l~~~~~~l~~l~v~~~~m~~~l~~~~~~~~a~~~~~~L~~~g  465 (486)
                                           +++|..+++++.++..++..+..++++|+||++||+++++  .+++++|++++.||++|
T Consensus       336 ---------------------q~~~~~l~~~~~~~~~~l~~~~~~l~~l~v~~~rm~~~l~--~~~~~At~la~~Lv~~G  392 (474)
T PLN02646        336 ---------------------QEDKEPLFDSVDTVSDMLEVATEFAQNITFNPERIKKSLP--AGMLDATTLADYLVRKG  392 (474)
T ss_pred             ---------------------hhHHHHHHHHHHHHHHHHHHHHHHHccCEECHHHHHHHHH--cCccHHHHHHHHHHHcC
Confidence                                 2257899999999999999999999999999999999997  46889999999999999


Q ss_pred             CChHHHHHHHHHHHHHhhhc
Q psy14319        466 GDRQVCHEKIRVLSHQAGAQ  485 (486)
Q Consensus       466 ~~fr~Ah~~v~~~~~~a~~~  485 (486)
                      +|||+||++|+++++.|.++
T Consensus       393 i~fr~Ah~iV~~~v~~a~~~  412 (474)
T PLN02646        393 VPFRETHHIVGAAVALAESK  412 (474)
T ss_pred             CCHHHHHHHHHHHHHHHHHh
Confidence            99999999999999998654

>PRK08937 adenylosuccinate lyase; Provisional

Probab=99.91  E-value=2.4e-24  Score=208.22  Aligned_cols=118  Identities=42%  Similarity=0.676  Sum_probs=111.7

Q ss_pred             HHHHHHHHHHHHHHHHHHHHh--ccccccccccCCCCCccCCCCCCchHHHHHHHHHHHHHHHHHHHHHhhccccccCCC
Q psy14319         85 VLSSLGASIHKLATDLRLLAH--MKEIEEPFESTQIGSSAMAYKRNPMRSERLCSLARFLMSLHQNSLATASTQWMERTL  162 (486)
Q Consensus        85 ~la~la~~LsRlA~DL~l~ss--~~el~e~~~~~~~GSSiMPqKrNP~~~E~ir~~a~~v~g~~~~~l~~~~~~~~erDl  162 (486)
                      +++.++++++|||+||++|++  |+|+.+|+.++++|||||||||||+.+|+++++++++.|+...++. .++.+||||+
T Consensus        22 ~l~~i~~~l~ria~Dl~~~~s~e~gei~~~~~~~~~gSSiMP~K~NP~~~E~i~~~a~~~~g~~~~~~~-~~~~~~erd~  100 (216)
T PRK08937         22 VLALIATSLEKFANEIRLLQRSEIREVEEPFAKGQKGSSAMPHKRNPIGSERITGLARVLRSYLVTALE-NVPLWHERDL  100 (216)
T ss_pred             HHHHHHHHHHHHHHHHHHHhccccceeecccccCCCCCccCCCccCcHHHHHHHHHHHHHHHHHHHHHH-HhHHHhccCC
Confidence            999999999999999999996  9999999878899999999999999999999999999999987554 4489999999


Q ss_pred             chhhHhhhchHHHHHHHHHHHHHHHHhhhccccCHHhhhhh
Q psy14319        163 DDSANRRLTLSESFLTTDCLLITLQNVLEGLVVYPKETYSI  203 (486)
Q Consensus       163 ~~~~~~~~~l~~a~~~~~~~l~~~~~vl~~l~vn~erm~~~  203 (486)
                      +.|..+|..+++++..+..++..+..++++++||++||++.
T Consensus       101 ~~~~~~~~~l~~~~~~~~~~l~~~~~~l~~l~v~~~rm~~~  141 (216)
T PRK08937        101 SHSSAERIALPDAFLALDYILNRFVNILENLVVFPENIERN  141 (216)
T ss_pred             chhHHHhhHHHHHHHHHHHHHHHHHHHHccCEECHHHHHHH
Confidence            99999999999999999999999999999999999999983

>PRK12308 bifunctional argininosuccinate lyase/N-acetylglutamate synthase; Provisional

Probab=99.91  E-value=3.2e-24  Score=236.73  Aligned_cols=187  Identities=17%  Similarity=0.121  Sum_probs=161.9

Q ss_pred             HHHHHHHHHHHcCCCCCc-cccccccCccHHHHHHHHHHHHHHHHHHHHHHHHHHhh--hh--hccccccCCCCcCcCCC
Q psy14319        229 VKALDRLVTKKAGFTSSH-IITGQTYSRKVDVIVTGVLSSLGASIHKLATDLRLLAH--MK--EIEEPFESTQIGSSAMA  303 (486)
Q Consensus       229 ~~~i~~~lA~~LGf~~a~-~~~~~~~~rd~~~e~~~~l~~~~~~l~rla~Dl~l~ss--~~--el~~~~~~~~~GSSiMP  303 (486)
                      ++.+++++++.|||..+. |..+++++||+++|++++++.++.+|+|||+||++|++  +|  |+.+   +.++||||||
T Consensus       205 ~~~~r~~~a~~LG~~~~~~n~~da~~~rd~~~e~~~~l~~~~~~l~ria~Dl~~~ss~e~g~~el~~---~~~~gSSiMP  281 (614)
T PRK12308        205 YPIDREALAHNLGFRRATRNSLDSVSDRDHVMELMSVASISMLHLSRLAEDLIFYNSGESGFIELAD---TVTSGSSLMP  281 (614)
T ss_pred             CCCCHHHHHHHhCCCCCcCCHHHHHcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcCCEEeCc---cCCCccccCc
Confidence            467788999999999764 55677999999999999999999999999999999999  77  5554   4569999999


Q ss_pred             CCCCchHHHHHHHHHHHHHHHhHHHHHHh--hhhHhhhcccccCCCCCCccccchhhhhhccCCcchhhhhhccCCCCcc
Q psy14319        304 YKRNPMRSERLCSLARFLMSLHQNSLATA--STQWMERTLDDSANRFPTKSVFSCVTQVKQHGKENDLVDRIRADPYFAP  381 (486)
Q Consensus       304 qKrNP~~~E~~~~~a~~~~g~~~~~~~~~--~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~g~~~d~~~~~~~~~~~~~  381 (486)
                      |||||+.+|+++++++++.|.+++++...  ...                            ++++|+            
T Consensus       282 qK~NP~~~E~i~~~a~~~~g~~~~~~~~~~~~~~----------------------------~~~rd~------------  321 (614)
T PRK12308        282 QKKNPDALELIRGKTGRVYGALAGMMMTVKALPL----------------------------AYNKDM------------  321 (614)
T ss_pred             CccCCcHHHHHHHHHHHHhhHHHHHHHHHcCCch----------------------------hhccch------------
Confidence            99999999999999999999998887542  112                            233333            


Q ss_pred             ccccCCCCCCCccccCCchhHhhhhhhcccchHHHHHHHHHHHHHHHhchhCCeeCHHHHHHHHhccCChhHHHHHHHHH
Q psy14319        382 ILNQMPTLLDPKSFYGRAPEQQRLSAKGIHTLSESFLTTDCLLITLQNVLEGLVVYPKVIQRHIDQELPFMATENIIMAM  461 (486)
Q Consensus       382 ~~~~~~~~~~p~~~~~~~~~q~~~~~~~~~~l~~~~~~~~~~l~~~~~~l~~l~v~~~~m~~~l~~~~~~~~a~~~~~~L  461 (486)
                                          |+     -|..+++++.++..++.++..++++++||++||++++  ..|+++++++|+.|
T Consensus       322 --------------------~~-----~~~~l~~~~~~~~~~l~~~~~~l~~l~v~~~rm~~~~--~~g~~~a~~la~~L  374 (614)
T PRK12308        322 --------------------QE-----DKEGLFDALDTWNDCMEMAALCFDGIKVNGERTLEAA--KQGYANATELADYL  374 (614)
T ss_pred             --------------------hh-----hHHHHHHHHHHHHHHHHHHHHHhCcCEECHHHHHHHH--HcCHHHHHHHHHHH
Confidence                                11     2568999999999999999999999999999999996  45789999999999


Q ss_pred             HHcCCChHHHHHHHHHHHHHhhhc
Q psy14319        462 VKAGGDRQVCHEKIRVLSHQAGAQ  485 (486)
Q Consensus       462 ~~~g~~fr~Ah~~v~~~~~~a~~~  485 (486)
                      +++|+|||+||++|+++++.+.++
T Consensus       375 ~~~g~~~r~Ah~~v~~~v~~a~~~  398 (614)
T PRK12308        375 VAKGIPFREAHHIVGVAVVGAIAK  398 (614)
T ss_pred             HHcCCCHHHHHHHHHHHHHHHHHc
Confidence            999999999999999999998664

>PF00206 Lyase_1: Lyase; InterPro: IPR022761 This entry represents the N-terminal region of lyase-1 family; PDB: 1DOF_C 1K62_B 1AOS_B 2VD6_D 2J91_B 1C3U_B 1C3C_A 3R6Y_C 3R6V_F 3R6Q_F

Probab=99.90  E-value=4.6e-24  Score=217.46  Aligned_cols=132  Identities=26%  Similarity=0.391  Sum_probs=114.5

Q ss_pred             hhhhhHhccHHHHHHHHHHHhhhcCCCceeecccCcccccchhhhhhhhhhhhHHHHHHcC-CCC---CCCcc-cccccc
Q psy14319          2 KFYKYVLGDGDKVKALDRLVTKKAGFNSSHIITGQTYSRKVDVIVTGVLSSLGASIHKKAG-FNS---SHIIT-GQTYSR   76 (486)
Q Consensus         2 ~~~~~~~~d~~r~~~~~~~~~~~~g~~~~~a~~g~~~~r~~d~~~~Gt~a~~~~~~a~~LG-f~~---~~~~~-~av~~R   76 (486)
                      .|.+.|.||.+|++++.++++.. +++ .++.+|+.++  +|+       .+++++++.|| |..   +..+| +++++|
T Consensus       174 ~~~~~l~r~~~rL~~~~~~~~~~-~lg-ga~g~gt~~~--~~~-------~~~~~~~~~L~~~~~l~~~~~~~~~~~~~r  242 (312)
T PF00206_consen  174 AWADELARDLERLEEARKRLNVS-PLG-GAVGAGTSLG--IDR-------EFQERVAEELGEFTGLGVPAPNWHDAVSSR  242 (312)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHEE-ETT-TTTTTSSHTT--SHH-------HHHHHHHHHHHHHHCSTEECSSHHHHHHCT
T ss_pred             HHHHHHHHHHHHHHHhHhHHHHH-hcc-CCCccccccc--cCc-------chhhhHHhhhhhhhhcccchhhcccccccc
Confidence            68999999999999999999853 342 3566777775  664       23458999999 776   55555 799999


Q ss_pred             cHHHHHHHHHHHHHHHHHHHHHHHHHHHh--ccccccccccCCCCCccCCCCCCchHHHHHHHHHHHHHH
Q psy14319         77 KVDVIVTGVLSSLGASIHKLATDLRLLAH--MKEIEEPFESTQIGSSAMAYKRNPMRSERLCSLARFLMS  144 (486)
Q Consensus        77 D~~~e~~~~la~la~~LsRlA~DL~l~ss--~~el~e~~~~~~~GSSiMPqKrNP~~~E~ir~~a~~v~g  144 (486)
                      |+++++++++++++++++|||+|+++|++  ++++.++++.+++|||+|||||||+.+|+++++|+++.|
T Consensus       243 d~~~e~~~~l~~l~~~l~kia~Dl~~~~s~e~g~~~~~~~~~~~GSS~MP~K~NP~~~E~i~~~a~~v~G  312 (312)
T PF00206_consen  243 DRLAELASALALLAGTLSKIAEDLRLLSSTEIGEVEEPFPEGQVGSSIMPHKRNPVILENIRGLARQVIG  312 (312)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHTSTTTSSEEEEGGGSSSCSSSSTTCEETHHHHHHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHhCCceeeeecccccccCCCccCCCCCCCHHHHHHHHhhhcCcC
Confidence            99999999999999999999999999997  999999998888899999999999999999999999987

...

>PRK05975 3-carboxy-cis,cis-muconate cycloisomerase; Provisional

Probab=99.90  E-value=3e-23  Score=214.34  Aligned_cols=153  Identities=23%  Similarity=0.170  Sum_probs=131.3

Q ss_pred             CCCCCCcccccccccCCCCCCCcHHHHHHHHHHHcCCCCCccccccccCccHHHHHHHHHHHHHHHHHHHHHHHHHHhh-
Q psy14319        206 IPDNRLSSHHTTKRSGRPGDGDKVKALDRLVTKKAGFTSSHIITGQTYSRKVDVIVTGVLSSLGASIHKLATDLRLLAH-  284 (486)
Q Consensus       206 ~~~~~g~~~~~~~~~~~~~~g~~~~~i~~~lA~~LGf~~a~~~~~~~~~rd~~~e~~~~l~~~~~~l~rla~Dl~l~ss-  284 (486)
                      ++|..|+..         ..|+.++.+++++++.|||..+ +  .|+++||++++++++++.++++++|||+||++|++ 
T Consensus       194 lGGAvGt~~---------~~~~~~~~~~~~~a~~LGl~~~-~--~~~~~rD~~~e~~~~la~la~~l~kiA~Di~ll~s~  261 (351)
T PRK05975        194 FGGAAGTLE---------KLGGKAAAVRARLAKRLGLEDA-P--QWHSQRDFIADFAHLLSLVTGSLGKFGQDIALMAQA  261 (351)
T ss_pred             CccHhccCc---------cCCCcHHHHHHHHHHHhCcCCC-c--chhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC
Confidence            566677642         2456678999999999999754 2  46799999999999999999999999999999998 


Q ss_pred             hhhccccccCCCCcCcCCCCCCCchHHHHHHHHHHHHHHHhHHHHHHhhhhHhhhcccccCCCCCCccccchhhhhhccC
Q psy14319        285 MKEIEEPFESTQIGSSAMAYKRNPMRSERLCSLARFLMSLHQNSLATASTQWMERTLDDSANRFPTKSVFSCVTQVKQHG  364 (486)
Q Consensus       285 ~~el~~~~~~~~~GSSiMPqKrNP~~~E~~~~~a~~~~g~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~g  364 (486)
                      =||+.+|+   ++|||||||||||+.+|+++++++.+.+...... .++..|+|||.+.|..                  
T Consensus       262 egev~~~~---~~GSS~MPhKrNPv~~E~i~~~ar~~~~~~~~~~-~~~~~~~er~~~~~~~------------------  319 (351)
T PRK05975        262 GDEISLSG---GGGSSAMPHKQNPVAAETLVTLARFNATQVSGLH-QALVHEQERSGAAWTL------------------  319 (351)
T ss_pred             CCcccCCC---CCccCCCCCCcCcHHHHHHHHHHHHHHHHHHHHH-hcccchhccCCchHHH------------------
Confidence            37888875   4999999999999999999999999999987766 4578999999876531                  


Q ss_pred             CcchhhhhhccCCCCccccccCCCCCCCccccCCchhHhhhhhhcccchHHHHHHHHHHHHHHHhchhCCee
Q psy14319        365 KENDLVDRIRADPYFAPILNQMPTLLDPKSFYGRAPEQQRLSAKGIHTLSESFLTTDCLLITLQNVLEGLVV  436 (486)
Q Consensus       365 ~~~d~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~q~~~~~~~~~~l~~~~~~~~~~l~~~~~~l~~l~v  436 (486)
                                                                  +|..+++++.++..++..+..++++|++
T Consensus       320 --------------------------------------------e~~~lp~~~~~~~~~l~~~~~ll~~l~~  347 (351)
T PRK05975        320 --------------------------------------------EWMILPQMVAATGAALRLALELAGNIRR  347 (351)
T ss_pred             --------------------------------------------HHHHHHHHHHHHHHHHHHHHHHHhhhHh
Confidence                                                        5789999999999999999999998864

>COG1027 AspA Aspartate ammonia-lyase [Amino acid transport and metabolism]

Probab=99.89  E-value=2.2e-22  Score=202.85  Aligned_cols=205  Identities=15%  Similarity=0.177  Sum_probs=164.0

Q ss_pred             HHhhhhhhcCCCCCCcccccccccCCCCCCCcHHHHHHHHHHHcCCC--CCccccccccCccHHHHHHHHHHHHHHHHHH
Q psy14319        197 PKETYSIRIIPDNRLSSHHTTKRSGRPGDGDKVKALDRLVTKKAGFT--SSHIITGQTYSRKVDVIVTGVLSSLGASIHK  274 (486)
Q Consensus       197 ~erm~~~~~~~~~~g~~~~~~~~~~~~~~g~~~~~i~~~lA~~LGf~--~a~~~~~~~~~rd~~~e~~~~l~~~~~~l~r  274 (486)
                      .+.++++....-+.||..        +....=...+.+++++..|++  .+.+..+++++-|.+++++++|..++..|+|
T Consensus       220 ~~~l~evNlGgTAiGTGi--------Na~~~Y~~~vv~~l~evtg~~~~~A~~Lieatq~~~afv~vsg~lk~~Av~LsK  291 (471)
T COG1027         220 AELLLEVNLGGTAIGTGI--------NAPKGYIELVVKKLAEVTGLPLVPAENLIEATQDTGAFVMVSGALKRLAVKLSK  291 (471)
T ss_pred             HHHHHhhcCCceeeccCc--------CCChhHHHHHHHHHHHHhCCCCccchhHHHHHhcccHHHHHHHHHHHHHHHHHH
Confidence            355555554555666643        333333567778899988776  4447888999999999999999999999999


Q ss_pred             HHHHHHHHhh-----hhhccccccCCCCcCcCCCCCCCchHHHHHHHHHHHHHHHhHHHHHHhhhhHhhhcccccCCCCC
Q psy14319        275 LATDLRLLAH-----MKEIEEPFESTQIGSSAMAYKRNPMRSERLCSLARFLMSLHQNSLATASTQWMERTLDDSANRFP  349 (486)
Q Consensus       275 la~Dl~l~ss-----~~el~~~~~~~~~GSSiMPqKrNP~~~E~~~~~a~~~~g~~~~~~~~~~~~~~e~~~~~~~~~~~  349 (486)
                      +|+||||++|     ++||.+  |+.|+||||||.|+||+.+|.+.+.|..++|+..++.+++..+.+|.          
T Consensus       292 I~NDlRLLsSGPr~Gl~EI~L--P~~Q~GSSIMPgKVNPVipEvvnQvcf~ViGnD~tit~AaeaGQLqL----------  359 (471)
T COG1027         292 ICNDLRLLSSGPRAGLNEINL--PAVQAGSSIMPGKVNPVIPEVVNQVCFKVIGNDTTITMAAEAGQLQL----------  359 (471)
T ss_pred             HhhhhhhhccCCccCcccccC--CCCCCCCCCCCCCcCchhHHHHHHHHHHHhcchHHHHHHHHhcchhh----------
Confidence            9999999999     899996  57899999999999999999999999999999999988865444332          


Q ss_pred             CccccchhhhhhccCCcchhhhhhccCCCCccccccCCCCCCCccccCCchhHhhhhhhcccchHHHHHHHHHHHHHHHh
Q psy14319        350 TKSVFSCVTQVKQHGKENDLVDRIRADPYFAPILNQMPTLLDPKSFYGRAPEQQRLSAKGIHTLSESFLTTDCLLITLQN  429 (486)
Q Consensus       350 ~~~~~~~~~~~~~~g~~~d~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~q~~~~~~~~~~l~~~~~~~~~~l~~~~~  429 (486)
                                                            +++.|.+.+              ..+.++..+..++..+..+
T Consensus       360 --------------------------------------NvmePvI~~--------------~l~~Si~iL~na~~~l~ek  387 (471)
T COG1027         360 --------------------------------------NVMEPVIAY--------------ALFESISILTNACRNLREK  387 (471)
T ss_pred             --------------------------------------hhhhHHHHH--------------HHHHHHHHHHHHHHHHHHH
Confidence                                                  556677653              3677778888899999999


Q ss_pred             chhCCeeCHHHHHHHHhccCChhHHHHHHHHHHHcCCChHHHHHHHHHHHH
Q psy14319        430 VLEGLVVYPKVIQRHIDQELPFMATENIIMAMVKAGGDRQVCHEKIRVLSH  480 (486)
Q Consensus       430 ~l~~l~v~~~~m~~~l~~~~~~~~a~~~~~~L~~~g~~fr~Ah~~v~~~~~  480 (486)
                      |++||++|+++|+++++.+.|.      +.+|.+. +++..+-++.+++..
T Consensus       388 cI~gItaN~e~C~~~v~nSigi------vTaLnp~-iGy~~~~~iaK~a~~  431 (471)
T COG1027         388 CIDGITANEERCEEYVENSIGI------VTALNPY-IGYENAAIIAKEALE  431 (471)
T ss_pred             HhhhcccCHHHHHHHHHhhhHH------HHhhccc-ccchHHHHHHHHHHH
Confidence            9999999999999999988764      3477788 667777666666543

>COG1027 AspA Aspartate ammonia-lyase [Amino acid transport and metabolism]

Probab=99.87  E-value=1.2e-21  Score=197.69  Aligned_cols=189  Identities=19%  Similarity=0.233  Sum_probs=158.8

Q ss_pred             hhhhhHhccHHHHHHHHHHHhhh-cCCCceeecccCccc-ccchhhhhhhhhhhhHHHHHHcCCC--CCCCccccccccc
Q psy14319          2 KFYKYVLGDGDKVKALDRLVTKK-AGFNSSHIITGQTYS-RKVDVIVTGVLSSLGASIHKKAGFN--SSHIITGQTYSRK   77 (486)
Q Consensus         2 ~~~~~~~~d~~r~~~~~~~~~~~-~g~~~~~a~~g~~~~-r~~d~~~~Gt~a~~~~~~a~~LGf~--~~~~~~~av~~RD   77 (486)
                      ||.-++.||..|+.+..+++-+. +|  |...-+|-.-+ .+....        -..+++..|+.  ...+..+++++.|
T Consensus       204 Afa~~l~ed~~ri~~~~~~l~evNlG--gTAiGTGiNa~~~Y~~~v--------v~~l~evtg~~~~~A~~Lieatq~~~  273 (471)
T COG1027         204 AFAVALKEDIKRIYRAAELLLEVNLG--GTAIGTGINAPKGYIELV--------VKKLAEVTGLPLVPAENLIEATQDTG  273 (471)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhhcCC--ceeeccCcCCChhHHHHH--------HHHHHHHhCCCCccchhHHHHHhccc
Confidence            78999999999999999998763 55  44333553321 122221        13788887765  4456779999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHh-----ccccccccccCCCCCccCCCCCCchHHHHHHHHHHHHHHHHHHHHHh
Q psy14319         78 VDVIVTGVLSSLGASIHKLATDLRLLAH-----MKEIEEPFESTQIGSSAMAYKRNPMRSERLCSLARFLMSLHQNSLAT  152 (486)
Q Consensus        78 ~~~e~~~~la~la~~LsRlA~DL~l~ss-----~~el~e~~~~~~~GSSiMPqKrNP~~~E~ir~~a~~v~g~~~~~l~~  152 (486)
                      .++++.+++..++..|+|+|+||+|++|     ++|+..|  +.|.||||||.|.||+++|.+.+.|..|.|+..++.+.
T Consensus       274 afv~vsg~lk~~Av~LsKI~NDlRLLsSGPr~Gl~EI~LP--~~Q~GSSIMPgKVNPVipEvvnQvcf~ViGnD~tit~A  351 (471)
T COG1027         274 AFVMVSGALKRLAVKLSKICNDLRLLSSGPRAGLNEINLP--AVQAGSSIMPGKVNPVIPEVVNQVCFKVIGNDTTITMA  351 (471)
T ss_pred             HHHHHHHHHHHHHHHHHHHhhhhhhhccCCccCcccccCC--CCCCCCCCCCCCcCchhHHHHHHHHHHHhcchHHHHHH
Confidence            9999999999999999999999999997     9999986  57999999999999999999999999999999988888


Q ss_pred             hccccccCCCchhhHhhhchHHHHHHHHHHHHHHHHhhhccccCHHhhhh
Q psy14319        153 ASTQWMERTLDDSANRRLTLSESFLTTDCLLITLQNVLEGLVVYPKETYS  202 (486)
Q Consensus       153 ~~~~~~erDl~~~~~~~~~l~~a~~~~~~~l~~~~~vl~~l~vn~erm~~  202 (486)
                      +-.++++.+.-++.+....+..+..+..+|..+..+|++||++|+++|++
T Consensus       352 aeaGQLqLNvmePvI~~~l~~Si~iL~na~~~l~ekcI~gItaN~e~C~~  401 (471)
T COG1027         352 AEAGQLQLNVMEPVIAYALFESISILTNACRNLREKCIDGITANEERCEE  401 (471)
T ss_pred             HHhcchhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccCHHHHHH
Confidence            77888888888888777777777778889999999999999999999987

>COG0114 FumC Fumarase [Energy production and conversion]

Probab=99.84  E-value=3.2e-20  Score=187.82  Aligned_cols=188  Identities=19%  Similarity=0.192  Sum_probs=161.4

Q ss_pred             hhhhhHhccHHHHHHHHHHHhhhcCCCceeecccCcccccchhhhhhhhhhhhH----HHHHHcC--CCCCCCccccccc
Q psy14319          2 KFYKYVLGDGDKVKALDRLVTKKAGFNSSHIITGQTYSRKVDVIVTGVLSSLGA----SIHKKAG--FNSSHIITGQTYS   75 (486)
Q Consensus         2 ~~~~~~~~d~~r~~~~~~~~~~~~g~~~~~a~~g~~~~r~~d~~~~Gt~a~~~~----~~a~~LG--f~~~~~~~~av~~   75 (486)
                      .|..+|....+|++.....+.+. ..||..--+|=+-+           ..|++    .++++-|  |...+|.+.+.+.
T Consensus       202 Gy~~ql~~~~~~i~~~l~~l~eL-AiGGTAVGTGlNa~-----------p~f~ekva~~i~~~TG~~F~~a~NkF~al~~  269 (462)
T COG0114         202 GYAAQLEHALERIEASLPHLYEL-AIGGTAVGTGLNAH-----------PEFGEKVAEELAELTGLPFVTAPNKFEALAA  269 (462)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHH-ccCCcccccCcCCC-----------ccHHHHHHHHHHHHhCCCcccCCcHHHHHhc
Confidence            58899999999999998888763 44343333443222           23455    4555544  6677788899999


Q ss_pred             ccHHHHHHHHHHHHHHHHHHHHHHHHHHHh-----ccccccccccCCCCCccCCCCCCchHHHHHHHHHHHHHHHHHHHH
Q psy14319         76 RKVDVIVTGVLSSLGASIHKLATDLRLLAH-----MKEIEEPFESTQIGSSAMAYKRNPMRSERLCSLARFLMSLHQNSL  150 (486)
Q Consensus        76 RD~~~e~~~~la~la~~LsRlA~DL~l~ss-----~~el~e~~~~~~~GSSiMPqKrNP~~~E~ir~~a~~v~g~~~~~l  150 (486)
                      +|.++++..+|..++..|.|||+||++|.|     ++||..|  +.++||||||.|.||..+|.+...|.+|+|+..++.
T Consensus       270 hd~lv~~~Gal~~lA~~L~KIAnDiR~l~SGPr~GLgEi~lP--enePGSSIMPGKVNPtq~EA~tmv~~QV~Gnd~ai~  347 (462)
T COG0114         270 HDALVEASGALRTLAVSLMKIANDIRWLGSGPRCGLGEIELP--ENEPGSSIMPGKVNPTQCEALTMVAAQVIGNDAAIA  347 (462)
T ss_pred             chHHHHHhHHHHHHHHHHHHHHHHHHHHhcCCCCCccccccC--CCCCCccCCCCCCCchhHHHHHHHHHHHHcchHHHH
Confidence            999999999999999999999999999997     9999986  679999999999999999999999999999999988


Q ss_pred             HhhccccccCCCchhhHhhhchHHHHHHHHHHHHHHHHhhhccccCHHhhhhh
Q psy14319        151 ATASTQWMERTLDDSANRRLTLSESFLTTDCLLITLQNVLEGLVVYPKETYSI  203 (486)
Q Consensus       151 ~~~~~~~~erDl~~~~~~~~~l~~a~~~~~~~l~~~~~vl~~l~vn~erm~~~  203 (486)
                      +.+..+.||.++..+.+-++.+.++-.+++++..+...|+.||++|+++|++.
T Consensus       348 ~ags~GnFELNv~~Pvi~~N~LqS~~LLada~~~f~~~ci~gie~n~~~i~~~  400 (462)
T COG0114         348 FAGSQGNFELNVFKPVIAYNFLQSVRLLADAMRSFADHCIVGIEPNEERIKEL  400 (462)
T ss_pred             HhhccCceeeccccHHHHHHHHHHHHHHHHHHHHHHHHHhhccccCHHHHHHH
Confidence            88888999999999998899998898999999999999999999999999984

>KOG1317|consensus

Probab=99.82  E-value=1.4e-20  Score=185.23  Aligned_cols=207  Identities=17%  Similarity=0.186  Sum_probs=161.5

Q ss_pred             ccCHHhhhhhhcCCCCCCcccccccccCCCCCCCcHHHHHHHHHHHcCCC--CCccccccccCccHHHHHHHHHHHHHHH
Q psy14319        194 VVYPKETYSIRIIPDNRLSSHHTTKRSGRPGDGDKVKALDRLVTKKAGFT--SSHIITGQTYSRKVDVIVTGVLSSLGAS  271 (486)
Q Consensus       194 ~vn~erm~~~~~~~~~~g~~~~~~~~~~~~~~g~~~~~i~~~lA~~LGf~--~a~~~~~~~~~rd~~~e~~~~l~~~~~~  271 (486)
                      .---.|+.++....-++|+.+.+        --.-...+.+.+++..|++  .+.|.+.+.+.||..+|+.++|..++.+
T Consensus       240 ~~~lpr~y~LA~GGTAVGTGLNT--------r~GFaeK~a~~va~ltgLpFvtApNkFEALAahDA~VE~~GalNt~A~S  311 (487)
T KOG1317|consen  240 AATLPRLYQLAQGGTAVGTGLNT--------RKGFAEKIAARVAELTGLPFVTAPNKFEALAAHDAMVEVSGALNTIAVS  311 (487)
T ss_pred             HhhhhHHHHHhcCCccccccccc--------cccHHHHHHHHHHHHhCCCceecccHHHHHHhhhhHHHhcccHHHHHHH
Confidence            33334566655566677776543        2233688899999987776  3447889999999999999999999999


Q ss_pred             HHHHHHHHHHHhh-----hhhccccccCCCCcCcCCCCCCCchHHHHHHHHHHHHHHHhHHHHHHhhhhHhhhcccccCC
Q psy14319        272 IHKLATDLRLLAH-----MKEIEEPFESTQIGSSAMAYKRNPMRSERLCSLARFLMSLHQNSLATASTQWMERTLDDSAN  346 (486)
Q Consensus       272 l~rla~Dl~l~ss-----~~el~~~~~~~~~GSSiMPqKrNP~~~E~~~~~a~~~~g~~~~~~~~~~~~~~e~~~~~~~~  346 (486)
                      |.||++|||++.|     +||+.+  |+..+||||||.|+||..||.+...|.+++|+...+...               
T Consensus       312 lmKianDIRfLGSGPRcGlgEL~L--PENEPGSSIMPGKVNPTQcEamTmvcaQVMGN~vAvtvg---------------  374 (487)
T KOG1317|consen  312 LMKIANDIRFLGSGPRCGLGELML--PENEPGSSIMPGKVNPTQCEAMTMVCAQVMGNHVAVTVG---------------  374 (487)
T ss_pred             HHHHhhhhhhccCCCCCCcccccc--CCCCCCcccCCCCCCcHHHHHHHHHHHHHhcCceEEEec---------------
Confidence            9999999999998     889885  577899999999999999999999999999998755332               


Q ss_pred             CCCCccccchhhhhhccCCcchhhhhhccCCCCccccccCCCCCCCccccCCchhHhhhhhhcccchHHHHHHHHHHHHH
Q psy14319        347 RFPTKSVFSCVTQVKQHGKENDLVDRIRADPYFAPILNQMPTLLDPKSFYGRAPEQQRLSAKGIHTLSESFLTTDCLLIT  426 (486)
Q Consensus       347 ~~~~~~~~~~~~~~~~~g~~~d~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~q~~~~~~~~~~l~~~~~~~~~~l~~  426 (486)
                                        ..|.+||.               +++.|...        +      +.|..+-.+++++..+
T Consensus       375 ------------------GsnGhFEL---------------NVFKP~i~--------~------nvL~SirLl~D~~~sF  407 (487)
T KOG1317|consen  375 ------------------GSNGHFEL---------------NVFKPLIA--------S------NVLHSIRLLADASVSF  407 (487)
T ss_pred             ------------------ccCceeEE---------------ecchHHHH--------H------HHHHHHHHhhhhhhhh
Confidence                              22333333               45555553        2      3778888899999999


Q ss_pred             HHhchhCCeeCHHHHHHHHhccCChhHHHHHHHHHHHcCCChHHHHHHHHHHH
Q psy14319        427 LQNVLEGLVVYPKVIQRHIDQELPFMATENIIMAMVKAGGDRQVCHEKIRVLS  479 (486)
Q Consensus       427 ~~~~l~~l~v~~~~m~~~l~~~~~~~~a~~~~~~L~~~g~~fr~Ah~~v~~~~  479 (486)
                      ..+|+.||+.|++|+.+.+..+.  ++    +.+|-++ ++++.|-.+.+.+-
T Consensus       408 ~~nCV~GI~aN~erI~kll~eSL--ML----VTALNPh-IGYD~aAkiAKtAh  453 (487)
T KOG1317|consen  408 TKNCVVGIEANKERIAKLLNESL--ML----VTALNPH-IGYDNAAKIAKTAH  453 (487)
T ss_pred             hhhhhhcccCCHHHHHHHHHhhh--hh----hhccCCc-cCchhHHHHHHHHh
Confidence            99999999999999999987764  32    3466777 77888877766543

>PF00206 Lyase_1: Lyase; InterPro: IPR022761 This entry represents the N-terminal region of lyase-1 family; PDB: 1DOF_C 1K62_B 1AOS_B 2VD6_D 2J91_B 1C3U_B 1C3C_A 3R6Y_C 3R6V_F 3R6Q_F

Probab=99.78  E-value=3.3e-19  Score=181.81  Aligned_cols=93  Identities=35%  Similarity=0.507  Sum_probs=82.2

Q ss_pred             HHHHHHHHHcC-CCC---Cc-cccccccCccHHHHHHHHHHHHHHHHHHHHHHHHHHhh--hhhccccccCCCCcCcCCC
Q psy14319        231 ALDRLVTKKAG-FTS---SH-IITGQTYSRKVDVIVTGVLSSLGASIHKLATDLRLLAH--MKEIEEPFESTQIGSSAMA  303 (486)
Q Consensus       231 ~i~~~lA~~LG-f~~---a~-~~~~~~~~rd~~~e~~~~l~~~~~~l~rla~Dl~l~ss--~~el~~~~~~~~~GSSiMP  303 (486)
                      .+.+.+++.|| |..   +. +..+++++||++++++++++.++.+++|||+||++|++  +|++.+|++.+++||||||
T Consensus       213 ~~~~~~~~~L~~~~~l~~~~~~~~~~~~~rd~~~e~~~~l~~l~~~l~kia~Dl~~~~s~e~g~~~~~~~~~~~GSS~MP  292 (312)
T PF00206_consen  213 EFQERVAEELGEFTGLGVPAPNWHDAVSSRDRLAELASALALLAGTLSKIAEDLRLLSSTEIGEVEEPFPEGQVGSSIMP  292 (312)
T ss_dssp             HHHHHHHHHHHHHHCSTEECSSHHHHHHCTHHHHHHHHHHHHHHHHHHHHHHHHHHHTSTTTSSEEEEGGGSSSCSSSST
T ss_pred             chhhhHHhhhhhhhhcccchhhcccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHhCCceeeeecccccccCCCccCC
Confidence            44446666666 432   32 56678899999999999999999999999999999999  9999999999999999999


Q ss_pred             CCCCchHHHHHHHHHHHHHH
Q psy14319        304 YKRNPMRSERLCSLARFLMS  323 (486)
Q Consensus       304 qKrNP~~~E~~~~~a~~~~g  323 (486)
                      |||||+.+|+++++|++++|
T Consensus       293 ~K~NP~~~E~i~~~a~~v~G  312 (312)
T PF00206_consen  293 HKRNPVILENIRGLARQVIG  312 (312)
T ss_dssp             TCEETHHHHHHHHHHHHHHH
T ss_pred             CCCCCHHHHHHHHhhhcCcC
Confidence            99999999999999999987

...

>KOG1317|consensus

Probab=99.67  E-value=1.2e-16  Score=157.72  Aligned_cols=190  Identities=19%  Similarity=0.215  Sum_probs=148.3

Q ss_pred             hhhhhHhccHHHHHHHHHHHhhh-cCCCceeecccCcccccchhhhhhhhhhhhHHHHHHcCCC--CCCCcccccccccH
Q psy14319          2 KFYKYVLGDGDKVKALDRLVTKK-AGFNSSHIITGQTYSRKVDVIVTGVLSSLGASIHKKAGFN--SSHIITGQTYSRKV   78 (486)
Q Consensus         2 ~~~~~~~~d~~r~~~~~~~~~~~-~g~~~~~a~~g~~~~r~~d~~~~Gt~a~~~~~~a~~LGf~--~~~~~~~av~~RD~   78 (486)
                      .|.+-+..-..|++....|+-.. +|  |..--+|-.-.+..+       --...+++++-|+-  ..+|-+.+.+.||.
T Consensus       227 gY~qQ~~ngl~Rv~~~lpr~y~LA~G--GTAVGTGLNTr~GFa-------eK~a~~va~ltgLpFvtApNkFEALAahDA  297 (487)
T KOG1317|consen  227 GYVQQVTNGLQRVAATLPRLYQLAQG--GTAVGTGLNTRKGFA-------EKIAARVAELTGLPFVTAPNKFEALAAHDA  297 (487)
T ss_pred             hHHHHHHHHHHHHHhhhhHHHHHhcC--CccccccccccccHH-------HHHHHHHHHHhCCCceecccHHHHHHhhhh
Confidence            36666666667777766666542 33  222112222111111       11234788887754  45667789999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHh-----ccccccccccCCCCCccCCCCCCchHHHHHHHHHHHHHHHHHHHHHhh
Q psy14319         79 DVIVTGVLSSLGASIHKLATDLRLLAH-----MKEIEEPFESTQIGSSAMAYKRNPMRSERLCSLARFLMSLHQNSLATA  153 (486)
Q Consensus        79 ~~e~~~~la~la~~LsRlA~DL~l~ss-----~~el~e~~~~~~~GSSiMPqKrNP~~~E~ir~~a~~v~g~~~~~l~~~  153 (486)
                      .+|+..+|..++.+|-||++||+++.|     ++|+.+|  +..+||||||.|.||.-||.+...|.+|+|+...+...+
T Consensus       298 ~VE~~GalNt~A~SlmKianDIRfLGSGPRcGlgEL~LP--ENEPGSSIMPGKVNPTQcEamTmvcaQVMGN~vAvtvgG  375 (487)
T KOG1317|consen  298 MVEVSGALNTIAVSLMKIANDIRFLGSGPRCGLGELMLP--ENEPGSSIMPGKVNPTQCEAMTMVCAQVMGNHVAVTVGG  375 (487)
T ss_pred             HHHhcccHHHHHHHHHHHhhhhhhccCCCCCCccccccC--CCCCCcccCCCCCCcHHHHHHHHHHHHHhcCceEEEecc
Confidence            999999999999999999999999996     8999876  578999999999999999999999999999987544556


Q ss_pred             ccccccCCCchhhHhhhchHHHHHHHHHHHHHHHHhhhccccCHHhhhh
Q psy14319        154 STQWMERTLDDSANRRLTLSESFLTTDCLLITLQNVLEGLVVYPKETYS  202 (486)
Q Consensus       154 ~~~~~erDl~~~~~~~~~l~~a~~~~~~~l~~~~~vl~~l~vn~erm~~  202 (486)
                      ..+.||.+.....+....+..+-.+++++..+-..|+.||+.|+||+.+
T Consensus       376 snGhFELNVFKP~i~~nvL~SirLl~D~~~sF~~nCV~GI~aN~erI~k  424 (487)
T KOG1317|consen  376 SNGHFELNVFKPLIASNVLHSIRLLADASVSFTKNCVVGIEANKERIAK  424 (487)
T ss_pred             cCceeEEecchHHHHHHHHHHHHHhhhhhhhhhhhhhhcccCCHHHHHH
Confidence            6778898888887777788888889999999999999999999999976

>cd01594 Lyase_I_like Lyase class I_like superfamily: contains the lyase class I family, histidine ammonia-lyase and phenylalanine ammonia-lyase, which catalyze similar beta-elimination reactions

Probab=99.62  E-value=3.8e-15  Score=144.68  Aligned_cols=108  Identities=34%  Similarity=0.335  Sum_probs=93.7

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHh--ccccccccccCCCCCccCCCCCCchHHHHHHHHHHHHHHHHHHHHHhhcc
Q psy14319         78 VDVIVTGVLSSLGASIHKLATDLRLLAH--MKEIEEPFESTQIGSSAMAYKRNPMRSERLCSLARFLMSLHQNSLATAST  155 (486)
Q Consensus        78 ~~~e~~~~la~la~~LsRlA~DL~l~ss--~~el~e~~~~~~~GSSiMPqKrNP~~~E~ir~~a~~v~g~~~~~l~~~~~  155 (486)
                      ++++++..++.++.+++||++|+++|++  ++++.+|+...++|||+||||+||+.+|++++.+..+.|...... ....
T Consensus       121 ~~~~~~~~l~~~~~~l~r~a~d~~~~~~~~~~~~~~~~~~~~~gSS~mp~k~Np~~~e~~~~~~~~~~~~~~~~~-~~~~  199 (231)
T cd01594         121 AVAEALDALALAAAHLSKIAEDLRLLLSGEFGELGEPFLPGQPGSSIMPQKVNPVAAELVRGLAGLVIGNLVAVL-TALK  199 (231)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCeeeCccCCCCCCCcCCCCCCCCHHHHHHHHHHHHHHhhHHHHH-HHHh
Confidence            8899999999999999999999999996  778888775578999999999999999999999999999987644 4455


Q ss_pred             ccccCCCchhhHhhhchHHHHHHHHHHHHHH
Q psy14319        156 QWMERTLDDSANRRLTLSESFLTTDCLLITL  186 (486)
Q Consensus       156 ~~~erDl~~~~~~~~~l~~a~~~~~~~l~~~  186 (486)
                      .++++|.+++...+..+++.+..+..++..+
T Consensus       200 ~~~~~~~~d~~~~~~~~~~~~~~~~~~l~~~  230 (231)
T cd01594         200 GGPERDNEDSPSMREILADSLLLLIDALRLL  230 (231)
T ss_pred             cccccccccCHHHHHHHHHHHHHHHHHHHHh
Confidence            6688899998888888888888887776553

Lyase class I_like superfamily of enzymes that catalyze beta-elimination reactions and are active as homotetramers. The four active sites of the homotetrameric enzyme are each formed by residues from three different subunits. This superfamily contains the lyase class I family, histidine ammonia-lyase and phenylalanine ammonia-lyase. The lyase class I family comprises proteins similar to class II fumarase, aspartase, adenylosuccinate lyase, argininosuccinate lyase, and 3-carboxy-cis, cis-muconate lactonizing enzyme which, for the most part catalyze similar beta-elimination reactions in which a C-N or C-O bond is cleaved with the release of fumarate as one of the products. Histidine or phenylalanine ammonia-lyase catalyze a beta-elimination of ammonia from histidine and phenylalanine, respective

>cd01594 Lyase_I_like Lyase class I_like superfamily: contains the lyase class I family, histidine ammonia-lyase and phenylalanine ammonia-lyase, which catalyze similar beta-elimination reactions

Probab=99.41  E-value=8.8e-13  Score=128.09  Aligned_cols=76  Identities=33%  Similarity=0.385  Sum_probs=70.2

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHhh--hhhccccccCCCCcCcCCCCCCCchHHHHHHHHHHHHHHHhHHHHHHh
Q psy14319        257 VDVIVTGVLSSLGASIHKLATDLRLLAH--MKEIEEPFESTQIGSSAMAYKRNPMRSERLCSLARFLMSLHQNSLATA  332 (486)
Q Consensus       257 ~~~e~~~~l~~~~~~l~rla~Dl~l~ss--~~el~~~~~~~~~GSSiMPqKrNP~~~E~~~~~a~~~~g~~~~~~~~~  332 (486)
                      ++++++..++.++.+++|+++|+++|++  ++++.+|+...++|||+||||+||+.+|++++++..+.|....++...
T Consensus       121 ~~~~~~~~l~~~~~~l~r~a~d~~~~~~~~~~~~~~~~~~~~~gSS~mp~k~Np~~~e~~~~~~~~~~~~~~~~~~~~  198 (231)
T cd01594         121 AVAEALDALALAAAHLSKIAEDLRLLLSGEFGELGEPFLPGQPGSSIMPQKVNPVAAELVRGLAGLVIGNLVAVLTAL  198 (231)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCeeeCccCCCCCCCcCCCCCCCCHHHHHHHHHHHHHHhhHHHHHHHH
Confidence            8899999999999999999999999998  788887766579999999999999999999999999999998887653

Lyase class I_like superfamily of enzymes that catalyze beta-elimination reactions and are active as homotetramers. The four active sites of the homotetrameric enzyme are each formed by residues from three different subunits. This superfamily contains the lyase class I family, histidine ammonia-lyase and phenylalanine ammonia-lyase. The lyase class I family comprises proteins similar to class II fumarase, aspartase, adenylosuccinate lyase, argininosuccinate lyase, and 3-carboxy-cis, cis-muconate lactonizing enzyme which, for the most part catalyze similar beta-elimination reactions in which a C-N or C-O bond is cleaved with the release of fumarate as one of the products. Histidine or phenylalanine ammonia-lyase catalyze a beta-elimination of ammonia from histidine and phenylalanine, respective

>PF14698 ASL_C2: Argininosuccinate lyase C-terminal; PDB: 1XWO_A 2E9F_A 1TJW_C 1TJU_A 1DCN_B 1K7W_B 1HY1_C 1TJV_B 1AUW_A 1U15_B

Probab=98.59  E-value=6.1e-08  Score=77.53  Aligned_cols=35  Identities=17%  Similarity=0.213  Sum_probs=31.6

Q ss_pred             hhHHHHHHHHHHHcCCChHHHHHHHHHHHHHhhhc
Q psy14319        451 FMATENIIMAMVKAGGDRQVCHEKIRVLSHQAGAQ  485 (486)
Q Consensus       451 ~~~a~~~~~~L~~~g~~fr~Ah~~v~~~~~~a~~~  485 (486)
                      |++||++|+.||++|+|||+||++|+++|+.|.++
T Consensus         1 f~~ATdlAD~LVr~GipFR~AH~iVg~~V~~a~~~   35 (70)
T PF14698_consen    1 FSTATDLADYLVRKGIPFREAHHIVGRLVRLAEEE   35 (70)
T ss_dssp             TGGHHHHHHHHHHTTS-HHHHHHHHHHHHHHHHHT
T ss_pred             CccHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHc
Confidence            67999999999999999999999999999998764

...

>PF08328 ASL_C: Adenylosuccinate lyase C-terminal; InterPro: IPR013539 This domain is found at the C terminus of adenylosuccinate lyase(ASL; PurB in Escherichia coli)

Probab=97.69  E-value=4.7e-05  Score=65.88  Aligned_cols=52  Identities=23%  Similarity=0.243  Sum_probs=43.2

Q ss_pred             HHHhchhCCeeCHHHHHHHHhccCChhHHHHHHHHHHHcCCChHHHHHHHHHHHH
Q psy14319        426 TLQNVLEGLVVYPKVIQRHIDQELPFMATENIIMAMVKAGGDRQVCHEKIRVLSH  480 (486)
Q Consensus       426 ~~~~~l~~l~v~~~~m~~~l~~~~~~~~a~~~~~~L~~~g~~fr~Ah~~v~~~~~  480 (486)
                      -+...+..|.||+++|.+.++.+|. ++||.+...|.+.|+  .++||.++++.+
T Consensus        29 s~lkGl~Kl~vn~~~l~~dL~~nWe-VlaEpIQTvmRr~g~--~~pYE~LK~lTR   80 (115)
T PF08328_consen   29 SLLKGLGKLEVNEERLAEDLDENWE-VLAEPIQTVMRRYGI--PNPYEKLKELTR   80 (115)
T ss_dssp             HHHHHHHTEEE-HHHHHHHHCT-GG-GGHHHHHHHHHHTT---SSHHHHHHHHHT
T ss_pred             HHHHHHhcccCCHHHHHHHHHHCHH-HHHHHHHHHHHHcCC--CCHHHHHHHHHc
Confidence            3455788899999999999999986 899999999999887  679999999876

It has been identified in bacteria, eukaryotes and archaea and is found together with the lyase domain IPR000362 from INTERPRO. ASL catalyses the cleavage of succinylaminoimidazole carboxamide ribotide to aminoimidazole carboxamide ribotide and fumarate and the cleavage of adenylosuccinate to adenylate and fumarate []. ; GO: 0004018 N6-(1,2-dicarboxyethyl)AMP AMP-lyase (fumarate-forming) activity, 0006188 IMP biosynthetic process; PDB: 2HVG_A 2QGA_C 2PTS_A 2PTR_A 2PTQ_B 3BHG_A 3GZH_A.

>PF10397 ADSL_C: Adenylosuccinate lyase C-terminus; InterPro: IPR019468 Adenylosuccinate lyase catalyses two steps in the synthesis of purine nucleotides: the conversion of succinylaminoimidazole-carboxamide ribotide into aminoimidazole-carboxamide ribotide (the fifth step of de novo IMP biosynthesis); the formation of adenosine monophosphate (AMP) from adenylosuccinate (the final step in the synthesis of AMP from IMP) []

Probab=97.10  E-value=0.00067  Score=55.66  Aligned_cols=37  Identities=22%  Similarity=0.308  Sum_probs=33.0

Q ss_pred             CChhHHHHHHHHHHHcCCChHHHHHHHHHHHHHhhhc
Q psy14319        449 LPFMATENIIMAMVKAGGDRQVCHEKIRVLSHQAGAQ  485 (486)
Q Consensus       449 ~~~~~a~~~~~~L~~~g~~fr~Ah~~v~~~~~~a~~~  485 (486)
                      .|++.||.++++|+++|+++++||++|.+++++|.++
T Consensus         1 ~Gli~SE~v~~~L~~~G~gR~~Ah~lv~~~a~~a~~~   37 (81)
T PF10397_consen    1 GGLIFSERVMLALAEKGLGRQEAHELVQEAAMEAWEN   37 (81)
T ss_dssp             TTGGGHHHHHHHHHHTTH-HHHHHHHHHHHHHHHHHT
T ss_pred             CcchHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHH
Confidence            3789999999999999999999999999999998653

This entry represents the C-terminal, seven alpha-helical, domain of adenylosuccinate lyase [].; PDB: 1YIS_A 1C3U_B 1C3C_A 3C8T_A 2PFM_B 1RE5_D 1Q5N_A 2VD6_D 2J91_B 2X75_A.

>PF08328 ASL_C: Adenylosuccinate lyase C-terminal; InterPro: IPR013539 This domain is found at the C terminus of adenylosuccinate lyase(ASL; PurB in Escherichia coli)

Probab=85.40  E-value=1.8  Score=37.79  Aligned_cols=72  Identities=17%  Similarity=0.063  Sum_probs=49.2

Q ss_pred             cccCCCchhhHhhhchHHHHHHHHHHHHHHHHhhhccccCHHhhhhhhcCCCCCCcccccccccCCCCCCCcHHHHHHHH
Q psy14319        157 WMERTLDDSANRRLTLSESFLTTDCLLITLQNVLEGLVVYPKETYSIRIIPDNRLSSHHTTKRSGRPGDGDKVKALDRLV  236 (486)
Q Consensus       157 ~~erDl~~~~~~~~~l~~a~~~~~~~l~~~~~vl~~l~vn~erm~~~~~~~~~~g~~~~~~~~~~~~~~g~~~~~i~~~l  236 (486)
                      .++||+.+|...|+ +.-++..+..+..-+.+-++.|.||+++|.+..                  +..|.-..+-..-+
T Consensus         2 R~QRDLtDSTvlRN-iGva~~~sliA~~s~lkGl~Kl~vn~~~l~~dL------------------~~nWeVlaEpIQTv   62 (115)
T PF08328_consen    2 RWQRDLTDSTVLRN-IGVAFGHSLIAYKSLLKGLGKLEVNEERLAEDL------------------DENWEVLAEPIQTV   62 (115)
T ss_dssp             STTB-THHHHHHTT-HHHHHHHHHHHHHHHHHHHHTEEE-HHHHHHHH------------------CT-GGGGHHHHHHH
T ss_pred             cccccchHHHHHHh-hhHHHHHHHHHHHHHHHHHhcccCCHHHHHHHH------------------HHCHHHHHHHHHHH
Confidence            46899999988766 455666666677777888999999999998732                  23333344555567


Q ss_pred             HHHcCCCCCcc
Q psy14319        237 TKKAGFTSSHI  247 (486)
Q Consensus       237 A~~LGf~~a~~  247 (486)
                      .+..|++.|+.
T Consensus        63 mRr~g~~~pYE   73 (115)
T PF08328_consen   63 MRRYGIPNPYE   73 (115)
T ss_dssp             HHHTT-SSHHH
T ss_pred             HHHcCCCCHHH
Confidence            88999998763

It has been identified in bacteria, eukaryotes and archaea and is found together with the lyase domain IPR000362 from INTERPRO. ASL catalyses the cleavage of succinylaminoimidazole carboxamide ribotide to aminoimidazole carboxamide ribotide and fumarate and the cleavage of adenylosuccinate to adenylate and fumarate []. ; GO: 0004018 N6-(1,2-dicarboxyethyl)AMP AMP-lyase (fumarate-forming) activity, 0006188 IMP biosynthetic process; PDB: 2HVG_A 2QGA_C 2PTS_A 2PTR_A 2PTQ_B 3BHG_A 3GZH_A.

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	486
4ffx_A	487	Structural And Biochemical Characterization Of Huma		2e-54
4ffx_A	487	Structural And Biochemical Characterization Of Huma		8e-50
4ffx_A	487	Structural And Biochemical Characterization Of Huma		1e-26
2vd6_A	503	Human Adenylosuccinate Lyase In Complex With Its Su		2e-54
2vd6_A	503	Human Adenylosuccinate Lyase In Complex With Its Su		9e-50
2vd6_A	503	Human Adenylosuccinate Lyase In Complex With Its Su		1e-26
2j91_A	503	Crystal Structure Of Human Adenylosuccinate Lyase I		2e-54
2j91_A	503	Crystal Structure Of Human Adenylosuccinate Lyase I		9e-50
2j91_A	503	Crystal Structure Of Human Adenylosuccinate Lyase I		1e-26
4flc_A	487	Structural And Biochemical Characterization Of Huma		2e-53
4flc_A	487	Structural And Biochemical Characterization Of Huma		8e-49
4flc_A	487	Structural And Biochemical Characterization Of Huma		1e-26
1yis_A	478	Structural Genomics Of Caenorhabditis Elegans: Aden		2e-33
1yis_A	478	Structural Genomics Of Caenorhabditis Elegans: Aden		4e-31
1yis_A	478	Structural Genomics Of Caenorhabditis Elegans: Aden		1e-05
2pfm_A	444	Crystal Structure Of Adenylosuccinate Lyase (Purb)		4e-13
2pfm_A	444	Crystal Structure Of Adenylosuccinate Lyase (Purb)		2e-08
1f1o_A	431	Structural Studies Of Adenylosuccinate Lyases Lengt		1e-12
1f1o_A	431	Structural Studies Of Adenylosuccinate Lyases Lengt		4e-08
1c3u_A	431	T. Maritima Adenylosuccinate Lyase Length = 431		2e-10
1c3u_A	431	T. Maritima Adenylosuccinate Lyase Length = 431		2e-08
1c3c_A	429	T. Maritima Adenylosuccinate Lyase Length = 429		2e-10
1c3c_A	429	T. Maritima Adenylosuccinate Lyase Length = 429		2e-08
2x75_A	431	Staphylococcus Aureus Adenylosuccinate Lyase Length		2e-09
2x75_A	431	Staphylococcus Aureus Adenylosuccinate Lyase Length		2e-06
4eei_A	438	Crystal Structure Of Adenylosuccinate Lyase From Fr		6e-08
4eei_A	438	Crystal Structure Of Adenylosuccinate Lyase From Fr		3e-05
1dof_A	403	The Crystal Structure Of Adenylosuccinate Lyase Fro		9e-07
3c8t_A	451	Crystal Structure Of Fumarate Lyase From Mesorhizob		2e-04

>pdb|4FFX|A Chain A, Structural And Biochemical Characterization Of Human Adenylosuccinate Lyase (Adsl) And The R303c Adsl Deficiency Associated Mutation Length = 487

Iteration: 1
 Score =  210 bits (534), Expect = 2e-54,   Method: Compositional matrix adjust.
 Identities = 100/149 (67%), Positives = 120/149 (80%)
Query: 50  LSSLGASIHKKAGFNSSHIITGQTYSRKVDVIVTGVLSSLGASIHKLATDLRLLAHMKEI 109
           +  L   + +KAGF  + IITGQTY+RKVD+ V  VL+SLGAS+HK+ TD+RLLA++KE+
Sbjct: 222 VEQLDKMVTEKAGFKRAFIITGQTYTRKVDIEVLSVLASLGASVHKICTDIRLLANLKEM 281
Query: 110 EEPFESTQIGSSAMAYKRNPMRSERLCSLARFLMSLHQNSLATASTQWMERTLDDSANRR 169
           EEPFE  QIGSSAM YKRNPMRSER CSLAR LM+L  + L TAS QW ERTLDDSANRR
Sbjct: 282 EEPFEKQQIGSSAMPYKRNPMRSERCCSLARHLMTLVMDPLQTASVQWFERTLDDSANRR 341
Query: 170 LTLSESFLTTDCLLITLQNVLEGLVVYPK 198
           + L+E+FLT D +L TLQN+ EGLVVYPK
Sbjct: 342 ICLAEAFLTADTILNTLQNISEGLVVYPK 370

>pdb|4FFX|A Chain A, Structural And Biochemical Characterization Of Human Adenylosuccinate Lyase (Adsl) And The R303c Adsl Deficiency Associated Mutation Length = 487

Iteration: 1
 Score =  194 bits (494), Expect = 8e-50,   Method: Compositional matrix adjust.
 Identities = 114/261 (43%), Positives = 146/261 (55%), Gaps = 69/261 (26%)
Query: 224 GDGDKVKALDRLVTKKAGFTSSHIITGQTYSRKVDVIVTGVLSSLGASIHKLATDLRLLA 283
           GD  KV+ LD++VT+KAGF  + IITGQTY+RKVD+ V  VL+SLGAS+HK+ TD+RLLA
Sbjct: 217 GDDHKVEQLDKMVTEKAGFKRAFIITGQTYTRKVDIEVLSVLASLGASVHKICTDIRLLA 276
Query: 284 HMKEIEEPFESTQIGSSAMAYKRNPMRSERLCSLARFLMSLHQNSLATASTQWMERTLDD 343
           ++KE+EEPFE  QIGSSAM YKRNPMRSER CSLAR LM+L  + L TAS QW ERTLDD
Sbjct: 277 NLKEMEEPFEKQQIGSSAMPYKRNPMRSERCCSLARHLMTLVMDPLQTASVQWFERTLDD 336
Query: 344 SANR---------------------------FP---------------TKSVFSCVTQVK 361
           SANR                           +P               T+++   +  VK
Sbjct: 337 SANRRICLAEAFLTADTILNTLQNISEGLVVYPKVIERRIRQELPFMATENII--MAMVK 394
Query: 362 QHGKENDLVDRIR------------------------ADPYFAPILNQMPTLLDPKSFYG 397
             G   D  ++IR                         D YF+PI +Q+  LLDP SF G
Sbjct: 395 AGGSRQDCHEKIRVLSQQAASVVKQEGGDNDLIERIQVDAYFSPIHSQLDHLLDPSSFTG 454
Query: 398 RAPEQ-QRLSAKGIHTLSESF 417
           RA +Q QR   + ++ L + +
Sbjct: 455 RASQQVQRFLEEEVYPLLKPY 475

>pdb|4FFX|A Chain A, Structural And Biochemical Characterization Of Human Adenylosuccinate Lyase (Adsl) And The R303c Adsl Deficiency Associated Mutation Length = 487

Iteration: 1
 Score =  117 bits (294), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 56/73 (76%), Positives = 62/73 (84%)
Query: 412 TLSESFLTTDCLLITLQNVLEGLVVYPKVIQRHIDQELPFMATENIIMAMVKAGGDRQVC 471
            L+E+FLT D +L TLQN+ EGLVVYPKVI+R I QELPFMATENIIMAMVKAGG RQ C
Sbjct: 343 CLAEAFLTADTILNTLQNISEGLVVYPKVIERRIRQELPFMATENIIMAMVKAGGSRQDC 402
Query: 472 HEKIRVLSHQAGA 484
           HEKIRVLS QA +
Sbjct: 403 HEKIRVLSQQAAS 415

>pdb|2VD6|A Chain A, Human Adenylosuccinate Lyase In Complex With Its Substrate N6-(1,2-Dicarboxyethyl)-Amp, And Its Products Amp And Fumarate. Length = 503

Iteration: 1
 Score =  210 bits (534), Expect = 2e-54,   Method: Compositional matrix adjust.
 Identities = 100/149 (67%), Positives = 120/149 (80%)
Query: 50  LSSLGASIHKKAGFNSSHIITGQTYSRKVDVIVTGVLSSLGASIHKLATDLRLLAHMKEI 109
           +  L   + +KAGF  + IITGQTY+RKVD+ V  VL+SLGAS+HK+ TD+RLLA++KE+
Sbjct: 241 VEQLDKMVTEKAGFKRAFIITGQTYTRKVDIEVLSVLASLGASVHKICTDIRLLANLKEM 300
Query: 110 EEPFESTQIGSSAMAYKRNPMRSERLCSLARFLMSLHQNSLATASTQWMERTLDDSANRR 169
           EEPFE  QIGSSAM YKRNPMRSER CSLAR LM+L  + L TAS QW ERTLDDSANRR
Sbjct: 301 EEPFEKQQIGSSAMPYKRNPMRSERCCSLARHLMTLVMDPLQTASVQWFERTLDDSANRR 360
Query: 170 LTLSESFLTTDCLLITLQNVLEGLVVYPK 198
           + L+E+FLT D +L TLQN+ EGLVVYPK
Sbjct: 361 ICLAEAFLTADTILNTLQNISEGLVVYPK 389

>pdb|2VD6|A Chain A, Human Adenylosuccinate Lyase In Complex With Its Substrate N6-(1,2-Dicarboxyethyl)-Amp, And Its Products Amp And Fumarate. Length = 503

Iteration: 1
 Score =  194 bits (493), Expect = 9e-50,   Method: Compositional matrix adjust.
 Identities = 114/261 (43%), Positives = 146/261 (55%), Gaps = 69/261 (26%)
Query: 224 GDGDKVKALDRLVTKKAGFTSSHIITGQTYSRKVDVIVTGVLSSLGASIHKLATDLRLLA 283
           GD  KV+ LD++VT+KAGF  + IITGQTY+RKVD+ V  VL+SLGAS+HK+ TD+RLLA
Sbjct: 236 GDDHKVEQLDKMVTEKAGFKRAFIITGQTYTRKVDIEVLSVLASLGASVHKICTDIRLLA 295
Query: 284 HMKEIEEPFESTQIGSSAMAYKRNPMRSERLCSLARFLMSLHQNSLATASTQWMERTLDD 343
           ++KE+EEPFE  QIGSSAM YKRNPMRSER CSLAR LM+L  + L TAS QW ERTLDD
Sbjct: 296 NLKEMEEPFEKQQIGSSAMPYKRNPMRSERCCSLARHLMTLVMDPLQTASVQWFERTLDD 355
Query: 344 SANR---------------------------FP---------------TKSVFSCVTQVK 361
           SANR                           +P               T+++   +  VK
Sbjct: 356 SANRRICLAEAFLTADTILNTLQNISEGLVVYPKVIERRIRQELPFMATENII--MAMVK 413
Query: 362 QHGKENDLVDRIR------------------------ADPYFAPILNQMPTLLDPKSFYG 397
             G   D  ++IR                         D YF+PI +Q+  LLDP SF G
Sbjct: 414 AGGSRQDCHEKIRVLSQQAASVVKQEGGDNDLIERIQVDAYFSPIHSQLDHLLDPSSFTG 473
Query: 398 RAPEQ-QRLSAKGIHTLSESF 417
           RA +Q QR   + ++ L + +
Sbjct: 474 RASQQVQRFLEEEVYPLLKPY 494

>pdb|2VD6|A Chain A, Human Adenylosuccinate Lyase In Complex With Its Substrate N6-(1,2-Dicarboxyethyl)-Amp, And Its Products Amp And Fumarate. Length = 503

Iteration: 1
 Score =  117 bits (294), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 56/72 (77%), Positives = 62/72 (86%)
Query: 413 LSESFLTTDCLLITLQNVLEGLVVYPKVIQRHIDQELPFMATENIIMAMVKAGGDRQVCH 472
           L+E+FLT D +L TLQN+ EGLVVYPKVI+R I QELPFMATENIIMAMVKAGG RQ CH
Sbjct: 363 LAEAFLTADTILNTLQNISEGLVVYPKVIERRIRQELPFMATENIIMAMVKAGGSRQDCH 422
Query: 473 EKIRVLSHQAGA 484
           EKIRVLS QA +
Sbjct: 423 EKIRVLSQQAAS 434

>pdb|2J91|A Chain A, Crystal Structure Of Human Adenylosuccinate Lyase In Complex With Amp Length = 503

Iteration: 1
 Score =  210 bits (534), Expect = 2e-54,   Method: Compositional matrix adjust.
 Identities = 100/149 (67%), Positives = 120/149 (80%)
Query: 50  LSSLGASIHKKAGFNSSHIITGQTYSRKVDVIVTGVLSSLGASIHKLATDLRLLAHMKEI 109
           +  L   + +KAGF  + IITGQTY+RKVD+ V  VL+SLGAS+HK+ TD+RLLA++KE+
Sbjct: 241 VEQLDKMVTEKAGFKRAFIITGQTYTRKVDIEVLSVLASLGASVHKICTDIRLLANLKEM 300
Query: 110 EEPFESTQIGSSAMAYKRNPMRSERLCSLARFLMSLHQNSLATASTQWMERTLDDSANRR 169
           EEPFE  QIGSSAM YKRNPMRSER CSLAR LM+L  + L TAS QW ERTLDDSANRR
Sbjct: 301 EEPFEKQQIGSSAMPYKRNPMRSERCCSLARHLMTLVMDPLQTASVQWFERTLDDSANRR 360
Query: 170 LTLSESFLTTDCLLITLQNVLEGLVVYPK 198
           + L+E+FLT D +L TLQN+ EGLVVYPK
Sbjct: 361 ICLAEAFLTADTILNTLQNISEGLVVYPK 389

>pdb|2J91|A Chain A, Crystal Structure Of Human Adenylosuccinate Lyase In Complex With Amp Length = 503

Iteration: 1
 Score =  194 bits (493), Expect = 9e-50,   Method: Compositional matrix adjust.
 Identities = 114/261 (43%), Positives = 146/261 (55%), Gaps = 69/261 (26%)
Query: 224 GDGDKVKALDRLVTKKAGFTSSHIITGQTYSRKVDVIVTGVLSSLGASIHKLATDLRLLA 283
           GD  KV+ LD++VT+KAGF  + IITGQTY+RKVD+ V  VL+SLGAS+HK+ TD+RLLA
Sbjct: 236 GDDHKVEQLDKMVTEKAGFKRAFIITGQTYTRKVDIEVLSVLASLGASVHKICTDIRLLA 295
Query: 284 HMKEIEEPFESTQIGSSAMAYKRNPMRSERLCSLARFLMSLHQNSLATASTQWMERTLDD 343
           ++KE+EEPFE  QIGSSAM YKRNPMRSER CSLAR LM+L  + L TAS QW ERTLDD
Sbjct: 296 NLKEMEEPFEKQQIGSSAMPYKRNPMRSERCCSLARHLMTLVMDPLQTASVQWFERTLDD 355
Query: 344 SANR---------------------------FP---------------TKSVFSCVTQVK 361
           SANR                           +P               T+++   +  VK
Sbjct: 356 SANRRICLAEAFLTADTILNTLQNISEGLVVYPKVIERRIRQELPFMATENII--MAMVK 413
Query: 362 QHGKENDLVDRIR------------------------ADPYFAPILNQMPTLLDPKSFYG 397
             G   D  ++IR                         D YF+PI +Q+  LLDP SF G
Sbjct: 414 AGGSRQDCHEKIRVLSQQAASVVKQEGGDNDLIERIQVDAYFSPIHSQLDHLLDPSSFTG 473
Query: 398 RAPEQ-QRLSAKGIHTLSESF 417
           RA +Q QR   + ++ L + +
Sbjct: 474 RASQQVQRFLEEEVYPLLKPY 494

>pdb|2J91|A Chain A, Crystal Structure Of Human Adenylosuccinate Lyase In Complex With Amp Length = 503

Iteration: 1
 Score =  117 bits (294), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 56/72 (77%), Positives = 62/72 (86%)
Query: 413 LSESFLTTDCLLITLQNVLEGLVVYPKVIQRHIDQELPFMATENIIMAMVKAGGDRQVCH 472
           L+E+FLT D +L TLQN+ EGLVVYPKVI+R I QELPFMATENIIMAMVKAGG RQ CH
Sbjct: 363 LAEAFLTADTILNTLQNISEGLVVYPKVIERRIRQELPFMATENIIMAMVKAGGSRQDCH 422
Query: 473 EKIRVLSHQAGA 484
           EKIRVLS QA +
Sbjct: 423 EKIRVLSQQAAS 434

>pdb|4FLC|A Chain A, Structural And Biochemical Characterization Of Human Adenylosuccinate Lyase (Adsl) And The R303c Adsl Deficiency Associated Mutation Length = 487

Iteration: 1
 Score =  206 bits (525), Expect = 2e-53,   Method: Compositional matrix adjust.
 Identities = 99/149 (66%), Positives = 119/149 (79%)
Query: 50  LSSLGASIHKKAGFNSSHIITGQTYSRKVDVIVTGVLSSLGASIHKLATDLRLLAHMKEI 109
           +  L   + +KAGF  + IITGQTY+RKVD+ V  VL+SLGAS+HK+ TD+RLLA++KE+
Sbjct: 222 VEQLDKMVTEKAGFKRAFIITGQTYTRKVDIEVLSVLASLGASVHKICTDIRLLANLKEM 281
Query: 110 EEPFESTQIGSSAMAYKRNPMRSERLCSLARFLMSLHQNSLATASTQWMERTLDDSANRR 169
           EEPFE  QIGSSAM YKRNPMRSE  CSLAR LM+L  + L TAS QW ERTLDDSANRR
Sbjct: 282 EEPFEKQQIGSSAMPYKRNPMRSECCCSLARHLMTLVMDPLQTASVQWFERTLDDSANRR 341
Query: 170 LTLSESFLTTDCLLITLQNVLEGLVVYPK 198
           + L+E+FLT D +L TLQN+ EGLVVYPK
Sbjct: 342 ICLAEAFLTADTILNTLQNISEGLVVYPK 370

>pdb|4FLC|A Chain A, Structural And Biochemical Characterization Of Human Adenylosuccinate Lyase (Adsl) And The R303c Adsl Deficiency Associated Mutation Length = 487

Iteration: 1
 Score =  191 bits (485), Expect = 8e-49,   Method: Compositional matrix adjust.
 Identities = 113/261 (43%), Positives = 145/261 (55%), Gaps = 69/261 (26%)
Query: 224 GDGDKVKALDRLVTKKAGFTSSHIITGQTYSRKVDVIVTGVLSSLGASIHKLATDLRLLA 283
           GD  KV+ LD++VT+KAGF  + IITGQTY+RKVD+ V  VL+SLGAS+HK+ TD+RLLA
Sbjct: 217 GDDHKVEQLDKMVTEKAGFKRAFIITGQTYTRKVDIEVLSVLASLGASVHKICTDIRLLA 276
Query: 284 HMKEIEEPFESTQIGSSAMAYKRNPMRSERLCSLARFLMSLHQNSLATASTQWMERTLDD 343
           ++KE+EEPFE  QIGSSAM YKRNPMRSE  CSLAR LM+L  + L TAS QW ERTLDD
Sbjct: 277 NLKEMEEPFEKQQIGSSAMPYKRNPMRSECCCSLARHLMTLVMDPLQTASVQWFERTLDD 336
Query: 344 SANR---------------------------FP---------------TKSVFSCVTQVK 361
           SANR                           +P               T+++   +  VK
Sbjct: 337 SANRRICLAEAFLTADTILNTLQNISEGLVVYPKVIERRIRQELPFMATENII--MAMVK 394
Query: 362 QHGKENDLVDRIR------------------------ADPYFAPILNQMPTLLDPKSFYG 397
             G   D  ++IR                         D YF+PI +Q+  LLDP SF G
Sbjct: 395 AGGSRQDCHEKIRVLSQQAASVVKQEGGDNDLIERIQVDAYFSPIHSQLDHLLDPSSFTG 454
Query: 398 RAPEQ-QRLSAKGIHTLSESF 417
           RA +Q QR   + ++ L + +
Sbjct: 455 RASQQVQRFLEEEVYPLLKPY 475

>pdb|4FLC|A Chain A, Structural And Biochemical Characterization Of Human Adenylosuccinate Lyase (Adsl) And The R303c Adsl Deficiency Associated Mutation Length = 487

Iteration: 1
 Score =  117 bits (294), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 56/73 (76%), Positives = 62/73 (84%)
Query: 412 TLSESFLTTDCLLITLQNVLEGLVVYPKVIQRHIDQELPFMATENIIMAMVKAGGDRQVC 471
            L+E+FLT D +L TLQN+ EGLVVYPKVI+R I QELPFMATENIIMAMVKAGG RQ C
Sbjct: 343 CLAEAFLTADTILNTLQNISEGLVVYPKVIERRIRQELPFMATENIIMAMVKAGGSRQDC 402
Query: 472 HEKIRVLSHQAGA 484
           HEKIRVLS QA +
Sbjct: 403 HEKIRVLSQQAAS 415

>pdb|1YIS|A Chain A, Structural Genomics Of Caenorhabditis Elegans: Adenylosuccinate Lyase Length = 478

Iteration: 1
 Score =  139 bits (351), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 73/163 (44%), Positives = 107/163 (65%), Gaps = 3/163 (1%)
Query: 50  LSSLGASIHKKAGFNSSHIITGQTYSRKVDVIVTGVLSSLGASIHKLATDLRLLAHMKEI 109
           + +L   + KKA F++  +ITGQTYSR+ D  +   LS LGA+  K+ TD+R+L    E+
Sbjct: 215 VEALDELVTKKANFSNRFLITGQTYSRQQDSQLVFSLSLLGAAAKKVCTDIRVLQAFGEL 274
Query: 110 EEPFESTQIGSSAMAYKRNPMRSERLCSLARFLMSLHQNSLATASTQWMERTLDDSANRR 169
            EPFE  QIGSSA  YK+NP +SER C+L+R L++  Q +L   + Q +ERTLDDSA RR
Sbjct: 275 LEPFEKDQIGSSAXPYKKNPXKSERCCALSRKLINAPQEALTILADQGLERTLDDSAGRR 334
Query: 170 LTLSESFLTTDCLLITLQNVLEGLVVYPKETYSIRIIPDNRLS 212
             + +  LT + LL TLQN+ EGL V   +T +++ I ++ ++
Sbjct: 335 XLIPDVLLTAEALLTTLQNIFEGLSV---QTDNVKKIVEDEIA 374

>pdb|1YIS|A Chain A, Structural Genomics Of Caenorhabditis Elegans: Adenylosuccinate Lyase Length = 478

Iteration: 1
 Score =  132 bits (333), Expect = 4e-31,   Method: Compositional matrix adjust.
 Identities = 67/124 (54%), Positives = 87/124 (70%)
Query: 224 GDGDKVKALDRLVTKKAGFTSSHIITGQTYSRKVDVIVTGVLSSLGASIHKLATDLRLLA 283
           GD  KV+ALD LVTKKA F++  +ITGQTYSR+ D  +   LS LGA+  K+ TD+R+L 
Sbjct: 210 GDESKVEALDELVTKKANFSNRFLITGQTYSRQQDSQLVFSLSLLGAAAKKVCTDIRVLQ 269
Query: 284 HMKEIEEPFESTQIGSSAMAYKRNPMRSERLCSLARFLMSLHQNSLATASTQWMERTLDD 343
              E+ EPFE  QIGSSA  YK+NP +SER C+L+R L++  Q +L   + Q +ERTLDD
Sbjct: 270 AFGELLEPFEKDQIGSSAXPYKKNPXKSERCCALSRKLINAPQEALTILADQGLERTLDD 329
Query: 344 SANR 347
           SA R
Sbjct: 330 SAGR 333

>pdb|1YIS|A Chain A, Structural Genomics Of Caenorhabditis Elegans: Adenylosuccinate Lyase Length = 478

Iteration: 1
 Score = 47.8 bits (112), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 23/70 (32%), Positives = 38/70 (54%)
Query: 413 LSESFLTTDCLLITLQNVLEGLVVYPKVIQRHIDQELPFMATENIIMAMVKAGGDRQVCH 472
           + +  LT + LL TLQN+ EGL V    +++ ++ E+ F+  E     + + G DRQ  H
Sbjct: 337 IPDVLLTAEALLTTLQNIFEGLSVQTDNVKKIVEDEIAFLGLEKAXXXLTEEGVDRQQAH 396
Query: 473 EKIRVLSHQA 482
             IR  + +A
Sbjct: 397 AVIRKTALEA 406

>pdb|2PFM|A Chain A, Crystal Structure Of Adenylosuccinate Lyase (Purb) From Bacillus Anthracis Length = 444

Iteration: 1
 Score = 72.8 bits (177), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 44/136 (32%), Positives = 73/136 (53%), Gaps = 11/136 (8%)
Query: 69  ITGQTYSRKVDVIVTGVLSSLGASIHKLATDLRLL--AHMKEIEEPFESTQIGSSAMAYK 126
           I+ QT  R         L+ +  SI K+A ++R L  +  +E+EE F   Q GSSAM +K
Sbjct: 220 ISTQTLQRDRHAHYMSTLALIATSIEKMAVEIRGLQKSETREVEEAFAKGQKGSSAMPHK 279
Query: 127 RNPMRSERLCSLAR----FLMSLHQNSLATASTQWMERTLDDSANRRLTLSESFLTTDCL 182
           RNP+ SE +  LAR    ++M+ ++N        W ER +  S+  R+ L ++ +  + +
Sbjct: 280 RNPIGSENMTGLARVIRGYMMTAYEN-----VPLWHERDISHSSAERVILPDATIALNYM 334
Query: 183 LITLQNVLEGLVVYPK 198
           L    N+++ L VYP+
Sbjct: 335 LNRFGNIVKNLTVYPE 350

>pdb|2PFM|A Chain A, Crystal Structure Of Adenylosuccinate Lyase (Purb) From Bacillus Anthracis Length = 444

Iteration: 1
 Score = 57.0 bits (136), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 39/120 (32%), Positives = 63/120 (52%), Gaps = 12/120 (10%)
Query: 232 LDRLVTKKAGFTSSHIITGQTYSRKVDVIVTGVLSSLGASIHKLATDLRLL--AHMKEIE 289
           +++ V +  G  ++ I T QT  R         L+ +  SI K+A ++R L  +  +E+E
Sbjct: 205 VEKYVCENLGLEAAPIST-QTLQRDRHAHYMSTLALIATSIEKMAVEIRGLQKSETREVE 263
Query: 290 EPFESTQIGSSAMAYKRNPMRSERLCSLAR----FLMSLHQNSLATASTQWMERTLDDSA 345
           E F   Q GSSAM +KRNP+ SE +  LAR    ++M+ ++N        W ER +  S+
Sbjct: 264 EAFAKGQKGSSAMPHKRNPIGSENMTGLARVIRGYMMTAYEN-----VPLWHERDISHSS 318

>pdb|1F1O|A Chain A, Structural Studies Of Adenylosuccinate Lyases Length = 431

Iteration: 1
 Score = 70.9 bits (172), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 55/200 (27%), Positives = 92/200 (46%), Gaps = 19/200 (9%)
Query: 5   KYVLGDGDKVKALDRLVTKKAGFNSSHIITGQTYSRKVDVIVTGVLSSLGASIHKKAGFN 64
           K  L   +  + L+R    KAG     I         +D  V   +        +K G  
Sbjct: 153 KLALWHEEMKRNLERFKQAKAGIEVGKISGAVGTYANIDPFVEQYVC-------EKLGLK 205
Query: 65  SSHIITGQTYSRKVDVIVTGVLSSLGASIHKLATDLRLL--AHMKEIEEPFESTQIGSSA 122
           ++ I T QT  R         L+ +  SI K A ++R L  +  +E+EE F   Q GSSA
Sbjct: 206 AAPIST-QTLQRDRHADYMATLALIATSIEKFAVEIRGLQKSETREVEEFFAKGQKGSSA 264
Query: 123 MAYKRNPMRSERLCSLAR----FLMSLHQNSLATASTQWMERTLDDSANRRLTLSESFLT 178
           M +KRNP+ SE +  +AR    ++M+ ++N        W ER +  S+  R+ L ++ + 
Sbjct: 265 MPHKRNPIGSENMTGMARVIRGYMMTAYEN-----VPLWHERDISHSSAERIILPDATIA 319
Query: 179 TDCLLITLQNVLEGLVVYPK 198
            + +L    N+++ L V+P+
Sbjct: 320 LNYMLNRFSNIVKNLTVFPE 339

>pdb|1F1O|A Chain A, Structural Studies Of Adenylosuccinate Lyases Length = 431

Iteration: 1
 Score = 56.2 bits (134), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 39/120 (32%), Positives = 63/120 (52%), Gaps = 12/120 (10%)
Query: 232 LDRLVTKKAGFTSSHIITGQTYSRKVDVIVTGVLSSLGASIHKLATDLRLL--AHMKEIE 289
           +++ V +K G  ++ I T QT  R         L+ +  SI K A ++R L  +  +E+E
Sbjct: 194 VEQYVCEKLGLKAAPIST-QTLQRDRHADYMATLALIATSIEKFAVEIRGLQKSETREVE 252
Query: 290 EPFESTQIGSSAMAYKRNPMRSERLCSLAR----FLMSLHQNSLATASTQWMERTLDDSA 345
           E F   Q GSSAM +KRNP+ SE +  +AR    ++M+ ++N        W ER +  S+
Sbjct: 253 EFFAKGQKGSSAMPHKRNPIGSENMTGMARVIRGYMMTAYEN-----VPLWHERDISHSS 307

>pdb|1C3U|A Chain A, T. Maritima Adenylosuccinate Lyase Length = 431

Iteration: 1
 Score = 64.3 bits (155), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 39/129 (30%), Positives = 65/129 (50%), Gaps = 3/129 (2%)
Query: 69  ITGQTYSRKVDVIVTGVLSSLGASIHKLATDLRLLAHMK--EIEEPFESTQIGSSAMAYK 126
           ++ Q   R         L+ + A I ++A ++R L   +  E+EEPF   Q GSSAM +K
Sbjct: 209 VSTQVVPRDRHAFYLSTLAIVAAGIERIAVEIRHLQRTEVLEVEEPFRKGQRGSSAMPHK 268
Query: 127 RNPMRSERLCSLARFLMSLHQNSLATASTQWMERTLDDSANRRLTLSESFLTTDCLLITL 186
           +NP+  ERL  L+R + +    SL   +  W ER +  S+  R    ++  T   +++T 
Sbjct: 269 KNPITCERLTGLSRMMRAYVDPSLENIAL-WHERDISHSSVERYVFPDATQTLYYMIVTA 327
Query: 187 QNVLEGLVV 195
            NV+  + V
Sbjct: 328 TNVVRNMKV 336

>pdb|1C3U|A Chain A, T. Maritima Adenylosuccinate Lyase Length = 431

Iteration: 1
 Score = 57.0 bits (136), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 37/114 (32%), Positives = 57/114 (50%), Gaps = 6/114 (5%)
Query: 248 ITGQTYSRKVDVIVTGVLSSLGASIHKLATDLRLLAHMK--EIEEPFESTQIGSSAMAYK 305
           ++ Q   R         L+ + A I ++A ++R L   +  E+EEPF   Q GSSAM +K
Sbjct: 209 VSTQVVPRDRHAFYLSTLAIVAAGIERIAVEIRHLQRTEVLEVEEPFRKGQRGSSAMPHK 268
Query: 306 RNPMRSERLCSLARFLMSLHQNSLATASTQWMERTLDDSANRFPTKSVFSCVTQ 359
           +NP+  ERL  L+R + +    SL   +  W ER +  S+     + VF   TQ
Sbjct: 269 KNPITCERLTGLSRMMRAYVDPSLENIAL-WHERDISHSS---VERYVFPDATQ 318

>pdb|1C3C|A Chain A, T. Maritima Adenylosuccinate Lyase Length = 429

Iteration: 1
 Score = 64.3 bits (155), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 39/129 (30%), Positives = 65/129 (50%), Gaps = 3/129 (2%)
Query: 69  ITGQTYSRKVDVIVTGVLSSLGASIHKLATDLRLLAHMK--EIEEPFESTQIGSSAMAYK 126
           ++ Q   R         L+ + A I ++A ++R L   +  E+EEPF   Q GSSAM +K
Sbjct: 208 VSTQVVPRDRHAFYLSTLAIVAAGIERIAVEIRHLQRTEVLEVEEPFRKGQRGSSAMPHK 267
Query: 127 RNPMRSERLCSLARFLMSLHQNSLATASTQWMERTLDDSANRRLTLSESFLTTDCLLITL 186
           +NP+  ERL  L+R + +    SL   +  W ER +  S+  R    ++  T   +++T 
Sbjct: 268 KNPITCERLTGLSRMMRAYVDPSLENIAL-WHERDISHSSVERYVFPDATQTLYYMIVTA 326
Query: 187 QNVLEGLVV 195
            NV+  + V
Sbjct: 327 TNVVRNMKV 335

>pdb|1C3C|A Chain A, T. Maritima Adenylosuccinate Lyase Length = 429

Iteration: 1
 Score = 57.0 bits (136), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 37/114 (32%), Positives = 57/114 (50%), Gaps = 6/114 (5%)
Query: 248 ITGQTYSRKVDVIVTGVLSSLGASIHKLATDLRLLAHMK--EIEEPFESTQIGSSAMAYK 305
           ++ Q   R         L+ + A I ++A ++R L   +  E+EEPF   Q GSSAM +K
Sbjct: 208 VSTQVVPRDRHAFYLSTLAIVAAGIERIAVEIRHLQRTEVLEVEEPFRKGQRGSSAMPHK 267
Query: 306 RNPMRSERLCSLARFLMSLHQNSLATASTQWMERTLDDSANRFPTKSVFSCVTQ 359
           +NP+  ERL  L+R + +    SL   +  W ER +  S+     + VF   TQ
Sbjct: 268 KNPITCERLTGLSRMMRAYVDPSLENIAL-WHERDISHSS---VERYVFPDATQ 317

>pdb|2X75|A Chain A, Staphylococcus Aureus Adenylosuccinate Lyase Length = 431

Iteration: 1
 Score = 60.5 bits (145), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 39/133 (29%), Positives = 65/133 (48%), Gaps = 9/133 (6%)
Query: 69  ITGQTYSRKVDVIVTGVLSSLGASIHKLATDLRLL--AHMKEIEEPFESTQIGSSAMAYK 126
           ++ QT  R         L+ +  S+ K A ++R L     +E+EE F   Q GSSAM +K
Sbjct: 209 VSTQTLQRDRHAYYIATLALIATSLEKFAVEIRNLQKTETREVEEAFAKGQKGSSAMPHK 268
Query: 127 RNPMRSERLCSLARFLMSLHQNSLATASTQ---WMERTLDDSANRRLTLSESFLTTDCLL 183
           RNP+ SE +  ++R +    +  + TA      W ER +  S+  R+ L +  +  D  L
Sbjct: 269 RNPIGSENITGISRVI----RGYITTAYENVPLWHERDISHSSAERIMLPDVTIALDYAL 324
Query: 184 ITLQNVLEGLVVY 196
               N+++ L V+
Sbjct: 325 NRFTNIVDRLTVF 337

>pdb|2X75|A Chain A, Staphylococcus Aureus Adenylosuccinate Lyase Length = 431

Iteration: 1
 Score = 50.4 bits (119), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 36/119 (30%), Positives = 58/119 (48%), Gaps = 10/119 (8%)
Query: 232 LDRLVTKKAGFTSSHIITGQTYSRKVDVIVTGVLSSLGASIHKLATDLRLL--AHMKEIE 289
           ++  V K  G  ++ + T QT  R         L+ +  S+ K A ++R L     +E+E
Sbjct: 194 IESYVCKHLGIGTAPVST-QTLQRDRHAYYIATLALIATSLEKFAVEIRNLQKTETREVE 252
Query: 290 EPFESTQIGSSAMAYKRNPMRSERLCSLARFLMSLHQNSLATASTQ---WMERTLDDSA 345
           E F   Q GSSAM +KRNP+ SE +  ++R +    +  + TA      W ER +  S+
Sbjct: 253 EAFAKGQKGSSAMPHKRNPIGSENITGISRVI----RGYITTAYENVPLWHERDISHSS 307

>pdb|4EEI|A Chain A, Crystal Structure Of Adenylosuccinate Lyase From Francisella Tularensis Complexed With Amp And Succinate Length = 438

Iteration: 1
 Score = 55.8 bits (133), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 35/109 (32%), Positives = 58/109 (53%), Gaps = 3/109 (2%)
Query: 89  LGASIHKLATDLRLL--AHMKEIEEPFESTQIGSSAMAYKRNPMRSERLCSLARFLMSLH 146
           + ++I +LA ++R L  + + E+ E F   Q GSS M +K+NP+ +E L  +AR L S H
Sbjct: 229 IASAIERLAVEIRHLHRSDVFEVYEGFSKGQKGSSTMPHKKNPISTENLTGMARMLRS-H 287
Query: 147 QNSLATASTQWMERTLDDSANRRLTLSESFLTTDCLLITLQNVLEGLVV 195
            +        W ER +  S+  R  L ++F      L  ++N ++ LVV
Sbjct: 288 VSIALENCVLWHERDISHSSAERFYLPDNFGIMVYALRRMKNTIDNLVV 336

>pdb|4EEI|A Chain A, Crystal Structure Of Adenylosuccinate Lyase From Francisella Tularensis Complexed With Amp And Succinate Length = 438

Iteration: 1
 Score = 46.6 bits (109), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 30/84 (35%), Positives = 46/84 (54%), Gaps = 4/84 (4%)
Query: 268 LGASIHKLATDLRLL--AHMKEIEEPFESTQIGSSAMAYKRNPMRSERLCSLARFLMSLH 325
           + ++I +LA ++R L  + + E+ E F   Q GSS M +K+NP+ +E L  +AR L S H
Sbjct: 229 IASAIERLAVEIRHLHRSDVFEVYEGFSKGQKGSSTMPHKKNPISTENLTGMARMLRS-H 287
Query: 326 QNSLATASTQWMERTLD-DSANRF 348
            +        W ER +   SA RF
Sbjct: 288 VSIALENCVLWHERDISHSSAERF 311

>pdb|1DOF|A Chain A, The Crystal Structure Of Adenylosuccinate Lyase From Pyrobaculum Aerophilum: Insights Into Thermal Stability And Human Pathology Length = 403

Iteration: 1
 Score = 51.6 bits (122), Expect = 9e-07,   Method: Compositional matrix adjust.
 Identities = 44/129 (34%), Positives = 70/129 (54%), Gaps = 3/129 (2%)
Query: 67  HIITGQTYSRKVDVIVTGVLSSLGASIHKLATDLRLLAHMKEIEEPFESTQIGSSAMAYK 126
           H+IT Q   R+   ++   L+ + A   +LA ++R L+   EI E       GSSAM +K
Sbjct: 211 HVITTQVAPRESFAVLASALALMAAVFERLAVEIRELSR-PEIGEV-VEGGGGSSAMPHK 268
Query: 127 RNPMRSERLCSLARFLMSLHQNSLATASTQWMERTLDDSANRRLTLSESFLTTDCLLITL 186
            NP  SER+ SLAR++ +L   +    +  W ER L +SAN R+ + E+ L  D +L + 
Sbjct: 269 ANPTASERIVSLARYVRALTHVAFENVAL-WHERDLTNSANERVWIPEALLALDEILTSA 327
Query: 187 QNVLEGLVV 195
             VL+ + +
Sbjct: 328 LRVLKNVYI 336

>pdb|3C8T|A Chain A, Crystal Structure Of Fumarate Lyase From Mesorhizobium Sp. Bnc1 Length = 451

Iteration: 1
 Score = 43.5 bits (101), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 40/158 (25%), Positives = 70/158 (44%), Gaps = 8/158 (5%)
Query: 47  TGVLSSLGA---SIHKKAGFNSSHIITGQTYSRKVDVIVTGV--LSSLGASIHKLATDLR 101
           +G L+SLG     + ++     +  +   T+    D +   V  L+ +  S+ KLA D+ 
Sbjct: 194 SGTLASLGTRGLDVQRELARELNLGVPSITWHSARDAVAETVQFLALVSGSLGKLAMDIS 253
Query: 102 LL--AHMKEIEEPFESTQIGSSAMAYKRNPMRSERLCSLARFLMSLHQNSLATASTQWME 159
           ++    + E+ EPF   +  SS M  K+NP+  E + + AR + + H  S+  A     E
Sbjct: 254 IMMTTELGEVAEPFVRHRGASSTMPQKQNPVSCELILAGARIVRN-HATSMLDAMIHDFE 312
Query: 160 RTLDDSANRRLTLSESFLTTDCLLITLQNVLEGLVVYP 197
           R           + E F     +L   + +L GL V+P
Sbjct: 313 RATGPWHLEWSAVPEGFAVASGILYQAEFMLGGLQVFP 350

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	486
1yis_A	478	Adenylosuccinate lyase; structural genomics, PSI,	1e-70
1yis_A	478	Adenylosuccinate lyase; structural genomics, PSI,	2e-60
1yis_A	478	Adenylosuccinate lyase; structural genomics, PSI,	3e-29
1yis_A	478	Adenylosuccinate lyase; structural genomics, PSI,	3e-06
2j91_A	503	Adenylosuccinate lyase; disease mutation, adenylos	2e-70
2j91_A	503	Adenylosuccinate lyase; disease mutation, adenylos	8e-60
2j91_A	503	Adenylosuccinate lyase; disease mutation, adenylos	5e-29
2j91_A	503	Adenylosuccinate lyase; disease mutation, adenylos	1e-08
1dof_A	403	Adenylosuccinate lyase; purine biosynthesis; 2.10A	4e-43
1dof_A	403	Adenylosuccinate lyase; purine biosynthesis; 2.10A	6e-32
1dof_A	403	Adenylosuccinate lyase; purine biosynthesis; 2.10A	9e-16
2pfm_A	444	Adenylosuccinate lyase; PURB, purine biosynthesis,	6e-31
2pfm_A	444	Adenylosuccinate lyase; PURB, purine biosynthesis,	2e-20
2pfm_A	444	Adenylosuccinate lyase; PURB, purine biosynthesis,	1e-08
1c3c_A	429	Protein (adenylosuccinate lyase); purine biosynthe	9e-28
1c3c_A	429	Protein (adenylosuccinate lyase); purine biosynthe	8e-18
1c3c_A	429	Protein (adenylosuccinate lyase); purine biosynthe	3e-08
4eei_A	438	Adenylosuccinate lyase; structural genomics, niaid	3e-27
4eei_A	438	Adenylosuccinate lyase; structural genomics, niaid	1e-17
4eei_A	438	Adenylosuccinate lyase; structural genomics, niaid	2e-08
1re5_A	450	3-carboxy-CIS,CIS-muconate cycloisomerase; homotet	2e-25
1re5_A	450	3-carboxy-CIS,CIS-muconate cycloisomerase; homotet	1e-16
1re5_A	450	3-carboxy-CIS,CIS-muconate cycloisomerase; homotet	2e-05
1q5n_A	454	3-carboxy-CIS,CIS-muconate cycloisomerase; CMLE, a	2e-25
1q5n_A	454	3-carboxy-CIS,CIS-muconate cycloisomerase; CMLE, a	2e-16
1q5n_A	454	3-carboxy-CIS,CIS-muconate cycloisomerase; CMLE, a	6e-05
3c8t_A	451	Fumarate lyase; structural genomics, PSI-2, protei	2e-25
3c8t_A	451	Fumarate lyase; structural genomics, PSI-2, protei	2e-16
3c8t_A	451	Fumarate lyase; structural genomics, PSI-2, protei	1e-05
2fel_A	359	3-carboxy-CIS,CIS-muconate lactonizing enzyme; bio	2e-23
2fel_A	359	3-carboxy-CIS,CIS-muconate lactonizing enzyme; bio	3e-17
3bhg_A	459	Adenylosuccinate lyase; structural G PSI-2, protei	2e-10
3bhg_A	459	Adenylosuccinate lyase; structural G PSI-2, protei	3e-08
2qga_B	465	Adenylosuccinate lyase; malaria, PV003765, SGC, st	4e-10
2qga_B	465	Adenylosuccinate lyase; malaria, PV003765, SGC, st	5e-08
2ptr_A	462	Adenylosuccinate lyase; mutant-substrate complex;	8e-10
2ptr_A	462	Adenylosuccinate lyase; mutant-substrate complex;	9e-08
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	9e-08

>1yis_A Adenylosuccinate lyase; structural genomics, PSI, P structure initiative, southeast collaboratory for structura genomics, secsg; 2.40A {Caenorhabditis elegans} Length = 478

 Score =  231 bits (591), Expect = 1e-70
 Identities = 72/140 (51%), Positives = 96/140 (68%)

Query: 59  KKAGFNSSHIITGQTYSRKVDVIVTGVLSSLGASIHKLATDLRLLAHMKEIEEPFESTQI 118
           KKA F++  +ITGQTYSR+ D  +   LS LGA+  K+ TD+R+L    E+ EPFE  QI
Sbjct: 224 KKANFSNRFLITGQTYSRQQDSQLVFSLSLLGAAAKKVCTDIRVLQAFGELLEPFEKDQI 283

Query: 119 GSSAMAYKRNPMRSERLCSLARFLMSLHQNSLATASTQWMERTLDDSANRRLTLSESFLT 178
           GSSAM YK+NPM+SER C+L+R L++  Q +L   + Q +ERTLDDSA RR+ + +  LT
Sbjct: 284 GSSAMPYKKNPMKSERCCALSRKLINAPQEALTILADQGLERTLDDSAGRRMLIPDVLLT 343

Query: 179 TDCLLITLQNVLEGLVVYPK 198
            + LL TLQN+ EGL V   
Sbjct: 344 AEALLTTLQNIFEGLSVQTD 363

>1yis_A Adenylosuccinate lyase; structural genomics, PSI, P structure initiative, southeast collaboratory for structura genomics, secsg; 2.40A {Caenorhabditis elegans} Length = 478

 Score =  204 bits (522), Expect = 2e-60
 Identities = 69/125 (55%), Positives = 89/125 (71%)

Query: 223 PGDGDKVKALDRLVTKKAGFTSSHIITGQTYSRKVDVIVTGVLSSLGASIHKLATDLRLL 282
            GD  KV+ALD LVTKKA F++  +ITGQTYSR+ D  +   LS LGA+  K+ TD+R+L
Sbjct: 209 AGDESKVEALDELVTKKANFSNRFLITGQTYSRQQDSQLVFSLSLLGAAAKKVCTDIRVL 268

Query: 283 AHMKEIEEPFESTQIGSSAMAYKRNPMRSERLCSLARFLMSLHQNSLATASTQWMERTLD 342
               E+ EPFE  QIGSSAM YK+NPM+SER C+L+R L++  Q +L   + Q +ERTLD
Sbjct: 269 QAFGELLEPFEKDQIGSSAMPYKKNPMKSERCCALSRKLINAPQEALTILADQGLERTLD 328

Query: 343 DSANR 347
           DSA R
Sbjct: 329 DSAGR 333

>1yis_A Adenylosuccinate lyase; structural genomics, PSI, P structure initiative, southeast collaboratory for structura genomics, secsg; 2.40A {Caenorhabditis elegans} Length = 478

 Score =  118 bits (299), Expect = 3e-29
 Identities = 24/74 (32%), Positives = 40/74 (54%)

Query: 412 TLSESFLTTDCLLITLQNVLEGLVVYPKVIQRHIDQELPFMATENIIMAMVKAGGDRQVC 471
            + +  LT + LL TLQN+ EGL V    +++ ++ E+ F+  E  +M + + G DRQ  
Sbjct: 336 LIPDVLLTAEALLTTLQNIFEGLSVQTDNVKKIVEDEIAFLGLEKAMMMLTEEGVDRQQA 395

Query: 472 HEKIRVLSHQAGAQ 485
           H  IR  + +A   
Sbjct: 396 HAVIRKTALEAKQL 409

>1yis_A Adenylosuccinate lyase; structural genomics, PSI, P structure initiative, southeast collaboratory for structura genomics, secsg; 2.40A {Caenorhabditis elegans} Length = 478

 Score = 48.8 bits (117), Expect = 3e-06
 Identities = 10/43 (23%), Positives = 22/43 (51%), Gaps = 1/43 (2%)

Query: 361 KQHGKENDLVDRIRADPYFAPILNQMPTLL-DPKSFYGRAPEQ 402
           +    +   + +  ADP+F  + +++  L+ +P +F GR   Q
Sbjct: 408 QLQATQKVDIRQTMADPFFDSVRDRVVGLVNNPINFTGRCVSQ 450

>2j91_A Adenylosuccinate lyase; disease mutation, adenylosuccinase, succino AMP-lyase, purin biosynthesis, adenylosuccinase DEFI AMP, ADSL, saicar, purine; HET: AMP; 1.8A {Homo sapiens} PDB: 2vd6_A* Length = 503

 Score =  231 bits (591), Expect = 2e-70
 Identities = 99/140 (70%), Positives = 117/140 (83%)

Query: 59  KKAGFNSSHIITGQTYSRKVDVIVTGVLSSLGASIHKLATDLRLLAHMKEIEEPFESTQI 118
           +KAGF  + IITGQTY+RKVD+ V  VL+SLGAS+HK+ TD+RLLA++KE+EEPFE  QI
Sbjct: 250 EKAGFKRAFIITGQTYTRKVDIEVLSVLASLGASVHKICTDIRLLANLKEMEEPFEKQQI 309

Query: 119 GSSAMAYKRNPMRSERLCSLARFLMSLHQNSLATASTQWMERTLDDSANRRLTLSESFLT 178
           GSSAM YKRNPMRSER CSLAR LM+L  + L TAS QW ERTLDDSANRR+ L+E+FLT
Sbjct: 310 GSSAMPYKRNPMRSERCCSLARHLMTLVMDPLQTASVQWFERTLDDSANRRICLAEAFLT 369

Query: 179 TDCLLITLQNVLEGLVVYPK 198
            D +L TLQN+ EGLVVYPK
Sbjct: 370 ADTILNTLQNISEGLVVYPK 389

>2j91_A Adenylosuccinate lyase; disease mutation, adenylosuccinase, succino AMP-lyase, purin biosynthesis, adenylosuccinase DEFI AMP, ADSL, saicar, purine; HET: AMP; 1.8A {Homo sapiens} PDB: 2vd6_A* Length = 503

 Score =  203 bits (519), Expect = 8e-60
 Identities = 87/124 (70%), Positives = 103/124 (83%)

Query: 224 GDGDKVKALDRLVTKKAGFTSSHIITGQTYSRKVDVIVTGVLSSLGASIHKLATDLRLLA 283
           GD  KV+ LD++VT+KAGF  + IITGQTY+RKVD+ V  VL+SLGAS+HK+ TD+RLLA
Sbjct: 236 GDDHKVEQLDKMVTEKAGFKRAFIITGQTYTRKVDIEVLSVLASLGASVHKICTDIRLLA 295

Query: 284 HMKEIEEPFESTQIGSSAMAYKRNPMRSERLCSLARFLMSLHQNSLATASTQWMERTLDD 343
           ++KE+EEPFE  QIGSSAM YKRNPMRSER CSLAR LM+L  + L TAS QW ERTLDD
Sbjct: 296 NLKEMEEPFEKQQIGSSAMPYKRNPMRSERCCSLARHLMTLVMDPLQTASVQWFERTLDD 355

Query: 344 SANR 347
           SANR
Sbjct: 356 SANR 359

>2j91_A Adenylosuccinate lyase; disease mutation, adenylosuccinase, succino AMP-lyase, purin biosynthesis, adenylosuccinase DEFI AMP, ADSL, saicar, purine; HET: AMP; 1.8A {Homo sapiens} PDB: 2vd6_A* Length = 503

 Score =  118 bits (298), Expect = 5e-29
 Identities = 56/74 (75%), Positives = 62/74 (83%)

Query: 412 TLSESFLTTDCLLITLQNVLEGLVVYPKVIQRHIDQELPFMATENIIMAMVKAGGDRQVC 471
            L+E+FLT D +L TLQN+ EGLVVYPKVI+R I QELPFMATENIIMAMVKAGG RQ C
Sbjct: 362 CLAEAFLTADTILNTLQNISEGLVVYPKVIERRIRQELPFMATENIIMAMVKAGGSRQDC 421

Query: 472 HEKIRVLSHQAGAQ 485
           HEKIRVLS QA + 
Sbjct: 422 HEKIRVLSQQAASV 435

>2j91_A Adenylosuccinate lyase; disease mutation, adenylosuccinase, succino AMP-lyase, purin biosynthesis, adenylosuccinase DEFI AMP, ADSL, saicar, purine; HET: AMP; 1.8A {Homo sapiens} PDB: 2vd6_A* Length = 503

 Score = 56.5 bits (137), Expect = 1e-08
 Identities = 25/44 (56%), Positives = 33/44 (75%)

Query: 359 QVKQHGKENDLVDRIRADPYFAPILNQMPTLLDPKSFYGRAPEQ 402
            VKQ G +NDL++RI+ D YF+PI +Q+  LLDP SF GRA +Q
Sbjct: 435 VVKQEGGDNDLIERIQVDAYFSPIHSQLDHLLDPSSFTGRASQQ 478

>1dof_A Adenylosuccinate lyase; purine biosynthesis; 2.10A {Pyrobaculum aerophilum} SCOP: a.127.1.1 Length = 403

 Score =  156 bits (396), Expect = 4e-43
 Identities = 46/140 (32%), Positives = 74/140 (52%), Gaps = 4/140 (2%)

Query: 59  KKAGFNSSHIITGQTYSRKVDVIVTGVLSSLGASIHKLATDLRLLAHMKEIEEPFESTQI 118
           ++ G    H+IT Q   R+   ++   L+ + A   +LA ++R L+   EI E  E    
Sbjct: 204 ERLGLPH-HVITTQVAPRESFAVLASALALMAAVFERLAVEIRELSR-PEIGEVVEG-GG 260

Query: 119 GSSAMAYKRNPMRSERLCSLARFLMSLHQNSLATASTQWMERTLDDSANRRLTLSESFLT 178
           GSSAM +K NP  SER+ SLAR++ +L   +       W ER L +SAN R+ + E+ L 
Sbjct: 261 GSSAMPHKANPTASERIVSLARYVRALTHVAF-ENVALWHERDLTNSANERVWIPEALLA 319

Query: 179 TDCLLITLQNVLEGLVVYPK 198
            D +L +   VL+ + +  +
Sbjct: 320 LDEILTSALRVLKNVYIDEE 339

>1dof_A Adenylosuccinate lyase; purine biosynthesis; 2.10A {Pyrobaculum aerophilum} SCOP: a.127.1.1 Length = 403

 Score =  125 bits (316), Expect = 6e-32
 Identities = 42/121 (34%), Positives = 63/121 (52%), Gaps = 4/121 (3%)

Query: 226 GDKVKALDRLVTKKAGFTSSHIITGQTYSRKVDVIVTGVLSSLGASIHKLATDLRLLAHM 285
           G+    + R V ++ G    H+IT Q   R+   ++   L+ + A   +LA ++R L+  
Sbjct: 192 GELGLEVRRRVAERLGLPH-HVITTQVAPRESFAVLASALALMAAVFERLAVEIRELSR- 249

Query: 286 KEIEEPFESTQIGSSAMAYKRNPMRSERLCSLARFLMSLHQNSLATASTQWMERTLDDSA 345
            EI E  E    GSSAM +K NP  SER+ SLAR++ +L   +       W ER L +SA
Sbjct: 250 PEIGEVVEG-GGGSSAMPHKANPTASERIVSLARYVRALTHVAF-ENVALWHERDLTNSA 307

Query: 346 N 346
           N
Sbjct: 308 N 308

>1dof_A Adenylosuccinate lyase; purine biosynthesis; 2.10A {Pyrobaculum aerophilum} SCOP: a.127.1.1 Length = 403

 Score = 78.1 bits (193), Expect = 9e-16
 Identities = 16/71 (22%), Positives = 35/71 (49%)

Query: 412 TLSESFLTTDCLLITLQNVLEGLVVYPKVIQRHIDQELPFMATENIIMAMVKAGGDRQVC 471
            + E+ L  D +L +   VL+ + +  + I  ++ + LP++ TE  +  M+K G  R   
Sbjct: 312 WIPEALLALDEILTSALRVLKNVYIDEERITENLQKALPYILTEFHMNRMIKEGASRAEA 371

Query: 472 HEKIRVLSHQA 482
           ++K + +    
Sbjct: 372 YKKAKEVKALT 382

>2pfm_A Adenylosuccinate lyase; PURB, purine biosynthesis, B anthracis; 2.00A {Bacillus anthracis} PDB: 1f1o_A 2x75_A* Length = 444

 Score =  123 bits (310), Expect = 6e-31
 Identities = 46/157 (29%), Positives = 76/157 (48%), Gaps = 8/157 (5%)

Query: 48  GVLSSLGASIHKKA----GFNSSHIITGQTYSRKVDVIVTGVLSSLGASIHKLATDLRLL 103
           G  +++   + K      G  ++ I T QT  R         L+ +  SI K+A ++R L
Sbjct: 196 GTYANIDPFVEKYVCENLGLEAAPIST-QTLQRDRHAHYMSTLALIATSIEKMAVEIRGL 254

Query: 104 AH--MKEIEEPFESTQIGSSAMAYKRNPMRSERLCSLARFLMSLHQNSLATASTQWMERT 161
                +E+EE F   Q GSSAM +KRNP+ SE +  LAR +      +       W ER 
Sbjct: 255 QKSETREVEEAFAKGQKGSSAMPHKRNPIGSENMTGLARVIRGYMMTAYE-NVPLWHERD 313

Query: 162 LDDSANRRLTLSESFLTTDCLLITLQNVLEGLVVYPK 198
           +  S+  R+ L ++ +  + +L    N+++ L VYP+
Sbjct: 314 ISHSSAERVILPDATIALNYMLNRFGNIVKNLTVYPE 350

>2pfm_A Adenylosuccinate lyase; PURB, purine biosynthesis, B anthracis; 2.00A {Bacillus anthracis} PDB: 1f1o_A 2x75_A* Length = 444

 Score = 92.8 bits (231), Expect = 2e-20
 Identities = 37/115 (32%), Positives = 55/115 (47%), Gaps = 4/115 (3%)

Query: 234 RLVTKKAGFTSSHIITGQTYSRKVDVIVTGVLSSLGASIHKLATDLRLLAH--MKEIEEP 291
           + V +  G  ++ I T QT  R         L+ +  SI K+A ++R L     +E+EE 
Sbjct: 207 KYVCENLGLEAAPIST-QTLQRDRHAHYMSTLALIATSIEKMAVEIRGLQKSETREVEEA 265

Query: 292 FESTQIGSSAMAYKRNPMRSERLCSLARFLMSLHQNSLATASTQWMERTLDDSAN 346
           F   Q GSSAM +KRNP+ SE +  LAR +      +       W ER +  S+ 
Sbjct: 266 FAKGQKGSSAMPHKRNPIGSENMTGLARVIRGYMMTAYE-NVPLWHERDISHSSA 319

>2pfm_A Adenylosuccinate lyase; PURB, purine biosynthesis, B anthracis; 2.00A {Bacillus anthracis} PDB: 1f1o_A 2x75_A* Length = 444

 Score = 56.2 bits (136), Expect = 1e-08
 Identities = 11/71 (15%), Positives = 40/71 (56%)

Query: 412 TLSESFLTTDCLLITLQNVLEGLVVYPKVIQRHIDQELPFMATENIIMAMVKAGGDRQVC 471
            L ++ +  + +L    N+++ L VYP+ ++R++ +    + ++ +++ ++  G  R+  
Sbjct: 323 ILPDATIALNYMLNRFGNIVKNLTVYPENMKRNMTRTYGLIYSQRVMLTLIDKGMVREEA 382

Query: 472 HEKIRVLSHQA 482
           ++ ++  + +A
Sbjct: 383 YDIVQPKAMEA 393

>1c3c_A Protein (adenylosuccinate lyase); purine biosynthesis; 1.80A {Thermotoga maritima} SCOP: a.127.1.1 PDB: 1c3u_A Length = 429

 Score =  113 bits (286), Expect = 9e-28
 Identities = 44/157 (28%), Positives = 74/157 (47%), Gaps = 8/157 (5%)

Query: 48  GVLSSLGASIHKKA----GFNSSHIITGQTYSRKVDVIVTGVLSSLGASIHKLATDLRLL 103
           G  +++   + +KA    G     + T Q   R         L+ + A I ++A ++R L
Sbjct: 184 GNYANVPPEVEEKALSYLGLKPEPVST-QVVPRDRHAFYLSTLAIVAAGIERIAVEIRHL 242

Query: 104 AH--MKEIEEPFESTQIGSSAMAYKRNPMRSERLCSLARFLMSLHQNSLATASTQWMERT 161
               + E+EEPF   Q GSSAM +K+NP+  ERL  L+R + +    SL      W ER 
Sbjct: 243 QRTEVLEVEEPFRKGQRGSSAMPHKKNPITCERLTGLSRMMRAYVDPSLE-NIALWHERD 301

Query: 162 LDDSANRRLTLSESFLTTDCLLITLQNVLEGLVVYPK 198
           +  S+  R    ++  T   +++T  NV+  + V  +
Sbjct: 302 ISHSSVERYVFPDATQTLYYMIVTATNVVRNMKVNEE 338

>1c3c_A Protein (adenylosuccinate lyase); purine biosynthesis; 1.80A {Thermotoga maritima} SCOP: a.127.1.1 PDB: 1c3u_A Length = 429

 Score = 84.6 bits (210), Expect = 8e-18
 Identities = 34/108 (31%), Positives = 49/108 (45%), Gaps = 4/108 (3%)

Query: 234 RLVTKKAGFTSSHIITGQTYSRKVDVIVTGVLSSLGASIHKLATDLRLLAH--MKEIEEP 291
                  G     + T Q   R         L+ + A I ++A ++R L    + E+EEP
Sbjct: 195 EKALSYLGLKPEPVST-QVVPRDRHAFYLSTLAIVAAGIERIAVEIRHLQRTEVLEVEEP 253

Query: 292 FESTQIGSSAMAYKRNPMRSERLCSLARFLMSLHQNSLATASTQWMER 339
           F   Q GSSAM +K+NP+  ERL  L+R + +    SL      W ER
Sbjct: 254 FRKGQRGSSAMPHKKNPITCERLTGLSRMMRAYVDPSLE-NIALWHER 300

>1c3c_A Protein (adenylosuccinate lyase); purine biosynthesis; 1.80A {Thermotoga maritima} SCOP: a.127.1.1 PDB: 1c3u_A Length = 429

 Score = 55.0 bits (133), Expect = 3e-08
 Identities = 9/70 (12%), Positives = 37/70 (52%)

Query: 413 LSESFLTTDCLLITLQNVLEGLVVYPKVIQRHIDQELPFMATENIIMAMVKAGGDRQVCH 472
             ++  T   +++T  NV+  + V  + ++++ID     + ++ +++ +++ G  R+  +
Sbjct: 312 FPDATQTLYYMIVTATNVVRNMKVNEERMKKNIDLTKGLVFSQRVLLKLIEKGLTRKEAY 371

Query: 473 EKIRVLSHQA 482
           + ++  + + 
Sbjct: 372 DIVQRNALKT 381

>4eei_A Adenylosuccinate lyase; structural genomics, niaid, national institute of allergy AN infectious diseases; HET: AMP; 1.92A {Francisella tularensis subsp} Length = 438

 Score =  112 bits (283), Expect = 3e-27
 Identities = 44/157 (28%), Positives = 69/157 (43%), Gaps = 8/157 (5%)

Query: 48  GVLSSLGASIHKKA----GFNSSHIITGQTYSRKVDVIVTGVLSSLGASIHKLATDLRLL 103
           G    L     KKA    G     + T Q   R     +  +   + ++I +LA ++R L
Sbjct: 185 GNYCILTTEDEKKAADILGLPVEEVST-QVIPRDRIAKLISIHGLIASAIERLAVEIRHL 243

Query: 104 AH--MKEIEEPFESTQIGSSAMAYKRNPMRSERLCSLARFLMSLHQNSLATASTQWMERT 161
               + E+ E F   Q GSS M +K+NP+ +E L  +AR L S    +L      W ER 
Sbjct: 244 HRSDVFEVYEGFSKGQKGSSTMPHKKNPISTENLTGMARMLRSHVSIALE-NCVLWHERD 302

Query: 162 LDDSANRRLTLSESFLTTDCLLITLQNVLEGLVVYPK 198
           +  S+  R  L ++F      L  ++N ++ LVV   
Sbjct: 303 ISHSSAERFYLPDNFGIMVYALRRMKNTIDNLVVQRD 339

>4eei_A Adenylosuccinate lyase; structural genomics, niaid, national institute of allergy AN infectious diseases; HET: AMP; 1.92A {Francisella tularensis subsp} Length = 438

 Score = 84.3 bits (209), Expect = 1e-17
 Identities = 31/115 (26%), Positives = 51/115 (44%), Gaps = 4/115 (3%)

Query: 234 RLVTKKAGFTSSHIITGQTYSRKVDVIVTGVLSSLGASIHKLATDLRLLAH--MKEIEEP 291
           +      G     + T Q   R     +  +   + ++I +LA ++R L    + E+ E 
Sbjct: 196 KKAADILGLPVEEVST-QVIPRDRIAKLISIHGLIASAIERLAVEIRHLHRSDVFEVYEG 254

Query: 292 FESTQIGSSAMAYKRNPMRSERLCSLARFLMSLHQNSLATASTQWMERTLDDSAN 346
           F   Q GSS M +K+NP+ +E L  +AR L S    +L      W ER +  S+ 
Sbjct: 255 FSKGQKGSSTMPHKKNPISTENLTGMARMLRSHVSIALE-NCVLWHERDISHSSA 308

>4eei_A Adenylosuccinate lyase; structural genomics, niaid, national institute of allergy AN infectious diseases; HET: AMP; 1.92A {Francisella tularensis subsp} Length = 438

 Score = 55.4 bits (134), Expect = 2e-08
 Identities = 10/71 (14%), Positives = 32/71 (45%)

Query: 412 TLSESFLTTDCLLITLQNVLEGLVVYPKVIQRHIDQELPFMATENIIMAMVKAGGDRQVC 471
            L ++F      L  ++N ++ LVV   +I+  +     ++++  +   +      R+ C
Sbjct: 312 YLPDNFGIMVYALRRMKNTIDNLVVQRDIIEDRVRSTSAYLSSFYLHFLVANTPFMREDC 371

Query: 472 HEKIRVLSHQA 482
           ++ ++ ++   
Sbjct: 372 YKIVQQVAFDL 382

>1re5_A 3-carboxy-CIS,CIS-muconate cycloisomerase; homotetramer, fumarase class II cycloisomerase, molecular EV isomerase; HET: CIT; 2.60A {Pseudomonas putida} SCOP: a.127.1.1 Length = 450

 Score =  107 bits (269), Expect = 2e-25
 Identities = 34/117 (29%), Positives = 47/117 (40%), Gaps = 3/117 (2%)

Query: 84  GVLSSLGASIHKLATDLRLLAH--MKEIEEPFESTQIGSSAMAYKRNPMRSERLCSLARF 141
            VL  +  S+ K   D+ LL      E+ EP    + GSS M +KRNP+ +  L   A  
Sbjct: 238 SVLGLVAGSLGKFGRDISLLMQTEAGEVFEPSAPGKGGSSTMPHKRNPVGAAVLIGAATR 297

Query: 142 LMSLHQNSLATASTQWMERTLDDSANRRLTLSESFLTTDCLLITLQNVLEGLVVYPK 198
           +  L     A A  Q  ER+L        TL +        L   Q + EG+ V   
Sbjct: 298 VPGLLSTLFA-AMPQEHERSLGLWHAEWETLPDICCLVSGALRQAQVIAEGMEVDAA 353

>1re5_A 3-carboxy-CIS,CIS-muconate cycloisomerase; homotetramer, fumarase class II cycloisomerase, molecular EV isomerase; HET: CIT; 2.60A {Pseudomonas putida} SCOP: a.127.1.1 Length = 450

 Score = 81.2 bits (201), Expect = 1e-16
 Identities = 26/79 (32%), Positives = 35/79 (44%), Gaps = 3/79 (3%)

Query: 263 GVLSSLGASIHKLATDLRLLAH--MKEIEEPFESTQIGSSAMAYKRNPMRSERLCSLARF 320
            VL  +  S+ K   D+ LL      E+ EP    + GSS M +KRNP+ +  L   A  
Sbjct: 238 SVLGLVAGSLGKFGRDISLLMQTEAGEVFEPSAPGKGGSSTMPHKRNPVGAAVLIGAATR 297

Query: 321 LMSLHQNSLATASTQWMER 339
           +  L     A A  Q  ER
Sbjct: 298 VPGLLSTLFA-AMPQEHER 315

>1re5_A 3-carboxy-CIS,CIS-muconate cycloisomerase; homotetramer, fumarase class II cycloisomerase, molecular EV isomerase; HET: CIT; 2.60A {Pseudomonas putida} SCOP: a.127.1.1 Length = 450

 Score = 45.7 bits (109), Expect = 2e-05
 Identities = 15/74 (20%), Positives = 30/74 (40%), Gaps = 1/74 (1%)

Query: 412 TLSESFLTTDCLLITLQNVLEGLVVYPKVIQRHIDQELPFMATENIIMAMVKAGGDRQVC 471
           TL +        L   Q + EG+ V    ++R++D     +  E + + + +  G R   
Sbjct: 326 TLPDICCLVSGALRQAQVIAEGMEVDAARMRRNLDLTQGLVLAEAVSIVLAQRLG-RDRA 384

Query: 472 HEKIRVLSHQAGAQ 485
           H  +     +A A+
Sbjct: 385 HHLLEQCCQRAVAE 398

>1q5n_A 3-carboxy-CIS,CIS-muconate cycloisomerase; CMLE, aromatic degradation; 2.30A {Acinetobacter calcoaceticus} SCOP: a.127.1.1 Length = 454

 Score =  107 bits (269), Expect = 2e-25
 Identities = 33/117 (28%), Positives = 56/117 (47%), Gaps = 3/117 (2%)

Query: 84  GVLSSLGASIHKLATDLRLLAH--MKEIEEPFESTQIGSSAMAYKRNPMRSERLCSLARF 141
            VL  +  ++ K+A D  L+    + E+ EP    + GSS M +KRNP+ +  + + A  
Sbjct: 242 SVLGIITGNVGKMARDWSLMMQTEIAEVFEPTAKGRGGSSTMPHKRNPVAAASVLAAANR 301

Query: 142 LMSLHQNSLATASTQWMERTLDDSANRRLTLSESFLTTDCLLITLQNVLEGLVVYPK 198
           + +L  +    +  Q  ER+L       L+L E F  T   L    +VL+G+ V  +
Sbjct: 302 VPALMSSIYQ-SMVQEHERSLGAWHAEWLSLPEIFQLTAGALERTLDVLKGMEVNAE 357

>1q5n_A 3-carboxy-CIS,CIS-muconate cycloisomerase; CMLE, aromatic degradation; 2.30A {Acinetobacter calcoaceticus} SCOP: a.127.1.1 Length = 454

 Score = 80.8 bits (200), Expect = 2e-16
 Identities = 22/79 (27%), Positives = 39/79 (49%), Gaps = 3/79 (3%)

Query: 263 GVLSSLGASIHKLATDLRLLAH--MKEIEEPFESTQIGSSAMAYKRNPMRSERLCSLARF 320
            VL  +  ++ K+A D  L+    + E+ EP    + GSS M +KRNP+ +  + + A  
Sbjct: 242 SVLGIITGNVGKMARDWSLMMQTEIAEVFEPTAKGRGGSSTMPHKRNPVAAASVLAAANR 301

Query: 321 LMSLHQNSLATASTQWMER 339
           + +L  +    +  Q  ER
Sbjct: 302 VPALMSSIYQ-SMVQEHER 319

>1q5n_A 3-carboxy-CIS,CIS-muconate cycloisomerase; CMLE, aromatic degradation; 2.30A {Acinetobacter calcoaceticus} SCOP: a.127.1.1 Length = 454

 Score = 44.2 bits (105), Expect = 6e-05
 Identities = 18/74 (24%), Positives = 33/74 (44%), Gaps = 1/74 (1%)

Query: 412 TLSESFLTTDCLLITLQNVLEGLVVYPKVIQRHIDQELPFMATENIIMAMVKAGGDRQVC 471
           +L E F  T   L    +VL+G+ V  + + ++I+     +  E ++MA+    G R   
Sbjct: 330 SLPEIFQLTAGALERTLDVLKGMEVNAENMHQNIECTHGLIMAEAVMMALAPHMG-RLNA 388

Query: 472 HEKIRVLSHQAGAQ 485
           H  +      A A+
Sbjct: 389 HHVVEAACKTAVAE 402

>3c8t_A Fumarate lyase; structural genomics, PSI-2, protein structure initiat YORK SGX research center for structural genomics, nysgxrc; 2.20A {Mesorhizobium SP} Length = 451

 Score =  107 bits (269), Expect = 2e-25
 Identities = 31/117 (26%), Positives = 52/117 (44%), Gaps = 3/117 (2%)

Query: 84  GVLSSLGASIHKLATDLRLLAH--MKEIEEPFESTQIGSSAMAYKRNPMRSERLCSLARF 141
             L+ +  S+ KLA D+ ++    + E+ EPF   +  SS M  K+NP+  E + + AR 
Sbjct: 236 QFLALVSGSLGKLAMDISIMMTTELGEVAEPFVRHRGASSTMPQKQNPVSCELILAGARI 295

Query: 142 LMSLHQNSLATASTQWMERTLDDSANRRLTLSESFLTTDCLLITLQNVLEGLVVYPK 198
           + +   + L  A     ER           + E F     +L   + +L GL V+P 
Sbjct: 296 VRNHATSMLD-AMIHDFERATGPWHLEWSAVPEGFAVASGILYQAEFMLGGLQVFPD 351

>3c8t_A Fumarate lyase; structural genomics, PSI-2, protein structure initiat YORK SGX research center for structural genomics, nysgxrc; 2.20A {Mesorhizobium SP} Length = 451

 Score = 80.4 bits (199), Expect = 2e-16
 Identities = 23/79 (29%), Positives = 39/79 (49%), Gaps = 3/79 (3%)

Query: 263 GVLSSLGASIHKLATDLRLLAH--MKEIEEPFESTQIGSSAMAYKRNPMRSERLCSLARF 320
             L+ +  S+ KLA D+ ++    + E+ EPF   +  SS M  K+NP+  E + + AR 
Sbjct: 236 QFLALVSGSLGKLAMDISIMMTTELGEVAEPFVRHRGASSTMPQKQNPVSCELILAGARI 295

Query: 321 LMSLHQNSLATASTQWMER 339
           + +   + L  A     ER
Sbjct: 296 VRNHATSMLD-AMIHDFER 313

>3c8t_A Fumarate lyase; structural genomics, PSI-2, protein structure initiat YORK SGX research center for structural genomics, nysgxrc; 2.20A {Mesorhizobium SP} Length = 451

 Score = 46.1 bits (110), Expect = 1e-05
 Identities = 16/74 (21%), Positives = 34/74 (45%), Gaps = 1/74 (1%)

Query: 412 TLSESFLTTDCLLITLQNVLEGLVVYPKVIQRHIDQELPFMATENIIMAMVKAGGDRQVC 471
            + E F     +L   + +L GL V+P  ++ ++D     +  E ++MA+    G R+  
Sbjct: 324 AVPEGFAVASGILYQAEFMLGGLQVFPDRMRENLDHSRGLIVAEAVMMALAPHTG-RKEA 382

Query: 472 HEKIRVLSHQAGAQ 485
           H+ + +   +A   
Sbjct: 383 HDIVYLGCRRAVED 396

>2fel_A 3-carboxy-CIS,CIS-muconate lactonizing enzyme; biodegradation, sulphonic acids, 3-sulphomuconate; 2.20A {Agrobacterium tumefaciens} PDB: 2fen_A Length = 359

 Score =  100 bits (251), Expect = 2e-23
 Identities = 31/118 (26%), Positives = 49/118 (41%), Gaps = 6/118 (5%)

Query: 84  GVLSSLGASIHKLATDLRLLAHMKEIEEPFESTQIGSSAMAYKRNPMRSERLCSLARFLM 143
            +LS +  ++ K   D+ L+   +   E   S   GSSAM +K+NP+ +E L +LARF  
Sbjct: 239 NLLSLVTGTLGKFGQDIALM--AEIGSEIRLSGGGGSSAMPHKQNPVNAETLVTLARFNA 296

Query: 144 SLHQNSLATASTQWMERTLDDSANRRLTLSESFLTTDCLLIT---LQNVLEGLVVYPK 198
                    +  Q  ER+        LTL +    T   L+    L   ++ L     
Sbjct: 297 VQISALHQ-SLVQEQERSGAGWMLEWLTLPQMVTATGTSLLVAERLAAQIDRLGADES 353

>2fel_A 3-carboxy-CIS,CIS-muconate lactonizing enzyme; biodegradation, sulphonic acids, 3-sulphomuconate; 2.20A {Agrobacterium tumefaciens} PDB: 2fen_A Length = 359

 Score = 82.3 bits (204), Expect = 3e-17
 Identities = 24/77 (31%), Positives = 37/77 (48%), Gaps = 3/77 (3%)

Query: 263 GVLSSLGASIHKLATDLRLLAHMKEIEEPFESTQIGSSAMAYKRNPMRSERLCSLARFLM 322
            +LS +  ++ K   D+ L+   +   E   S   GSSAM +K+NP+ +E L +LARF  
Sbjct: 239 NLLSLVTGTLGKFGQDIALM--AEIGSEIRLSGGGGSSAMPHKQNPVNAETLVTLARFNA 296

Query: 323 SLHQNSLATASTQWMER 339
                    +  Q  ER
Sbjct: 297 VQISALHQ-SLVQEQER 312

>3bhg_A Adenylosuccinate lyase; structural G PSI-2, protein structure initiative, midwest center for STR genomics, MCSG; 1.90A {Legionella pneumophila subsp} Length = 459

 Score = 61.5 bits (149), Expect = 2e-10
 Identities = 21/127 (16%), Positives = 45/127 (35%), Gaps = 1/127 (0%)

Query: 72  QTYSRKVDVIVTGVLSSLGASIHKLATDLRLLAHMKEIEEPFESTQIGSSAMAYKRNPMR 131
           Q         V+ ++  +   +     D+     +   ++   + ++GSS M +K NP+ 
Sbjct: 250 QIEPHDGIAEVSQIMVRINNILLDYTQDIWSYISLGYFKQKTIAEEVGSSTMPHKVNPID 309

Query: 132 SERLCSLARFLMSLHQNSLATASTQWMERTLDDSANRRLTLSESFLTTDCLLITLQNVLE 191
            E          +L  +     +   M+R L DS   R  L  +F  +     ++    +
Sbjct: 310 FENAEGNLGLSNALFIHFANKLTQSRMQRDLSDSTVLR-NLGVAFSYSLIAYHSVAKGND 368

Query: 192 GLVVYPK 198
            L +   
Sbjct: 369 KLQINKS 375

>3bhg_A Adenylosuccinate lyase; structural G PSI-2, protein structure initiative, midwest center for STR genomics, MCSG; 1.90A {Legionella pneumophila subsp} Length = 459

 Score = 54.6 bits (131), Expect = 3e-08
 Identities = 17/95 (17%), Positives = 35/95 (36%)

Query: 251 QTYSRKVDVIVTGVLSSLGASIHKLATDLRLLAHMKEIEEPFESTQIGSSAMAYKRNPMR 310
           Q         V+ ++  +   +     D+     +   ++   + ++GSS M +K NP+ 
Sbjct: 250 QIEPHDGIAEVSQIMVRINNILLDYTQDIWSYISLGYFKQKTIAEEVGSSTMPHKVNPID 309

Query: 311 SERLCSLARFLMSLHQNSLATASTQWMERTLDDSA 345
            E          +L  +     +   M+R L DS 
Sbjct: 310 FENAEGNLGLSNALFIHFANKLTQSRMQRDLSDST 344

>2qga_B Adenylosuccinate lyase; malaria, PV003765, SGC, structural G consortium; HET: AMP; 2.01A {Plasmodium vivax} PDB: 2hvg_A Length = 465

 Score = 61.1 bits (148), Expect = 4e-10
 Identities = 23/143 (16%), Positives = 47/143 (32%), Gaps = 4/143 (2%)

Query: 57  IHKKAGFNSSHIITGQTYSRKVDVIVTGVLSSLGASIHKLATDLRLLAHMKEIEEPFEST 116
           + K      S   T Q         +   L+    ++  L  D+ L      ++   +  
Sbjct: 233 LKKHFNLTYSIYCT-QIQDHDYICELCDGLARANGTLIDLCVDIWLYISNNLLKLKVKEK 291

Query: 117 QIGSSAMAYKRNPMRSERLCSLARFLMSLHQNSLATASTQW-MERTLDDSANRRLTLSES 175
           ++GSS M +K NP+  E          +      ++      ++R L DS   R  +  S
Sbjct: 292 EVGSSTMPHKVNPIDFENAEGNLHIANAF-FKLFSSKLPTSRLQRDLSDSTVLR-NIGSS 349

Query: 176 FLTTDCLLITLQNVLEGLVVYPK 198
                    ++   L  + +  +
Sbjct: 350 LAYCLIAYKSVLKGLNKIDIDRR 372

>2qga_B Adenylosuccinate lyase; malaria, PV003765, SGC, structural G consortium; HET: AMP; 2.01A {Plasmodium vivax} PDB: 2hvg_A Length = 465

 Score = 54.1 bits (130), Expect = 5e-08
 Identities = 21/114 (18%), Positives = 39/114 (34%), Gaps = 3/114 (2%)

Query: 233 DRLVTKKAGFTSSHIITGQTYSRKVDVIVTGVLSSLGASIHKLATDLRLLAHMKEIEEPF 292
              + K    T S   T Q         +   L+    ++  L  D+ L      ++   
Sbjct: 230 GLFLKKHFNLTYSIYCT-QIQDHDYICELCDGLARANGTLIDLCVDIWLYISNNLLKLKV 288

Query: 293 ESTQIGSSAMAYKRNPMRSERLCSLARFLMSLHQNSLATASTQW-MERTLDDSA 345
           +  ++GSS M +K NP+  E          +      ++      ++R L DS 
Sbjct: 289 KEKEVGSSTMPHKVNPIDFENAEGNLHIANAF-FKLFSSKLPTSRLQRDLSDST 341

>2ptr_A Adenylosuccinate lyase; mutant-substrate complex; HET: 2SA; 1.85A {Escherichia coli} PDB: 2ptq_A* 2pts_A 3gzh_A Length = 462

 Score = 60.0 bits (145), Expect = 8e-10
 Identities = 20/127 (15%), Positives = 39/127 (30%), Gaps = 1/127 (0%)

Query: 72  QTYSRKVDVIVTGVLSSLGASIHKLATDLRLLAHMKEIEEPFESTQIGSSAMAYKRNPMR 131
           Q         +   ++     +     D+     +   ++   + +IGSS M +K NP+ 
Sbjct: 247 QIEPHDYIAELFDCVARFNTILIDFDRDVWGYIALNHFKQKTIAGEIGSSTMPHKVNPID 306

Query: 132 SERLCSLARFLMSLHQNSLATASTQWMERTLDDSANRRLTLSESFLTTDCLLITLQNVLE 191
            E          ++ Q+  +       +R L DS   R  L            +    + 
Sbjct: 307 FENSEGNLGLSNAVLQHLASKLPVSRWQRDLTDSTVLR-NLGVGIGYALIAYQSTLKGVS 365

Query: 192 GLVVYPK 198
            L V   
Sbjct: 366 KLEVNRD 372

>2ptr_A Adenylosuccinate lyase; mutant-substrate complex; HET: 2SA; 1.85A {Escherichia coli} PDB: 2ptq_A* 2pts_A 3gzh_A Length = 462

 Score = 53.4 bits (128), Expect = 9e-08
 Identities = 16/95 (16%), Positives = 33/95 (34%)

Query: 251 QTYSRKVDVIVTGVLSSLGASIHKLATDLRLLAHMKEIEEPFESTQIGSSAMAYKRNPMR 310
           Q         +   ++     +     D+     +   ++   + +IGSS M +K NP+ 
Sbjct: 247 QIEPHDYIAELFDCVARFNTILIDFDRDVWGYIALNHFKQKTIAGEIGSSTMPHKVNPID 306

Query: 311 SERLCSLARFLMSLHQNSLATASTQWMERTLDDSA 345
            E          ++ Q+  +       +R L DS 
Sbjct: 307 FENSEGNLGLSNAVLQHLASKLPVSRWQRDLTDST 341

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 53.7 bits (128), Expect = 9e-08
 Identities = 86/570 (15%), Positives = 159/570 (27%), Gaps = 147/570 (25%)

Query: 4   YKYVLGDGDKVKALDRLVTKKAGFNSSHIITGQTYSRKVDVIVTGVLSS----LGASIHK 59
             +++   D V    RL           +++ Q     V   V  VL      L + I  
Sbjct: 51  IDHIIMSKDAVSGTLRLFWT--------LLSKQ--EEMVQKFVEEVLRINYKFLMSPIKT 100

Query: 60  KAGFNSSHIITGQTYSRKVDVIVTG--VLSSLGASIHKLATDLRLLAHMKEIE-EPFEST 116
           +       ++T + Y  + D +     V +    S  +    LR    + E+        
Sbjct: 101 EQ--RQPSMMT-RMYIEQRDRLYNDNQVFAKYNVSRLQPYLKLR--QALLELRPAKNVLI 155

Query: 117 Q----IGSSAMAYKRNPMRSERL---------------CSLARFLMSLHQNSLATASTQW 157
                 G + +A   +   S ++               C+    ++ + Q  L      W
Sbjct: 156 DGVLGSGKTWVA--LDVCLSYKVQCKMDFKIFWLNLKNCNSPETVLEMLQKLLYQIDPNW 213

Query: 158 MERTLDDSAN------------RRLTLSESFLTTDCLLITLQNVLEGLVVYPKETYSI-- 203
             R  D S+N            RRL  S+ +   +CLL+ L NV           +++  
Sbjct: 214 TSR-SDHSSNIKLRIHSIQAELRRLLKSKPY--ENCLLV-LLNVQNAKAW---NAFNLSC 266

Query: 204 RIIPDNRLSSHHTTKRSG--RPGDGDKVKALDRLVTKKAGFTSSHIITGQTYSRKVDVIV 261
           +I+         TT+               +  L       T           + +D   
Sbjct: 267 KILL--------TTRFKQVTDFLSAATTTHI-SLDHHSMTLTPDE--VKSLLLKYLDCRP 315

Query: 262 TGVLSSLGASIHKLATDL--RLLAHMKEIEEPFE-------STQIGSSAMAYKRNPMRSE 312
              L     + +     +    +       + ++       +T I SS    +    R +
Sbjct: 316 QD-LPREVLTTNPRRLSIIAESIRDGLATWDNWKHVNCDKLTTIIESSLNVLEPAEYR-K 373

Query: 313 RLCSLARFLMSLHQNSLATASTQWMERTLDDS---ANRFPTKSVFSCVTQVKQHGKEN-- 367
               L+ F  S H       S  W +    D     N+    S+      V++  KE+  
Sbjct: 374 MFDRLSVFPPSAHI-PTILLSLIWFDVIKSDVMVVVNKLHKYSL------VEKQPKESTI 426

Query: 368 ---DLVDRIRA-------------DPYFAPILNQMPTLLDPK------SFYG---RAPEQ 402
               +   ++              D Y  P       L+ P       S  G   +  E 
Sbjct: 427 SIPSIYLELKVKLENEYALHRSIVDHYNIPKTFDSDDLIPPYLDQYFYSHIGHHLKNIEH 486

Query: 403 QR--------------LSAKGIHTLSESFLTTDCLLITLQNVLEGLVVYPKVIQRHIDQE 448
                           L  K  H       T      ++ N L+ L  Y   I    D +
Sbjct: 487 PERMTLFRMVFLDFRFLEQKIRHDS-----TAWNASGSILNTLQQLKFYKPYIC---DND 538

Query: 449 LPFMATENIIMAMVKAGGDRQVCHEKIRVL 478
             +    N I+  +    +  +C +   +L
Sbjct: 539 PKYERLVNAILDFLPKIEENLICSKYTDLL 568

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	486
4eei_A	438	Adenylosuccinate lyase; structural genomics, niaid	100.0
2j91_A	503	Adenylosuccinate lyase; disease mutation, adenylos	100.0
1c3c_A	429	Protein (adenylosuccinate lyase); purine biosynthe	100.0
1yis_A	478	Adenylosuccinate lyase; structural genomics, PSI,	100.0
1tj7_A	457	Argininosuccinate lyase; crystallin, E. coli, fuma	100.0
2pfm_A	444	Adenylosuccinate lyase; PURB, purine biosynthesis,	100.0
1re5_A	450	3-carboxy-CIS,CIS-muconate cycloisomerase; homotet	100.0
2e9f_A	462	Argininosuccinate lyase; alpha helix bundle; HET:	100.0
3c8t_A	451	Fumarate lyase; structural genomics, PSI-2, protei	100.0
1q5n_A	454	3-carboxy-CIS,CIS-muconate cycloisomerase; CMLE, a	100.0
1k7w_A	468	Delta 2 crystallin; eye lens protein, argininosucc	100.0
2pfm_A	444	Adenylosuccinate lyase; PURB, purine biosynthesis,	100.0
1c3c_A	429	Protein (adenylosuccinate lyase); purine biosynthe	100.0
1dof_A	403	Adenylosuccinate lyase; purine biosynthesis; 2.10A	100.0
1q5n_A	454	3-carboxy-CIS,CIS-muconate cycloisomerase; CMLE, a	100.0
4eei_A	438	Adenylosuccinate lyase; structural genomics, niaid	100.0
1re5_A	450	3-carboxy-CIS,CIS-muconate cycloisomerase; homotet	100.0
3c8t_A	451	Fumarate lyase; structural genomics, PSI-2, protei	100.0
1yis_A	478	Adenylosuccinate lyase; structural genomics, PSI,	100.0
1dof_A	403	Adenylosuccinate lyase; purine biosynthesis; 2.10A	100.0
2j91_A	503	Adenylosuccinate lyase; disease mutation, adenylos	100.0
2fel_A	359	3-carboxy-CIS,CIS-muconate lactonizing enzyme; bio	99.97
1fur_A	467	Fumarase C, FUMC; hydrolyase, carbon oxygen lyase,	99.97
1vdk_A	466	Fumarase C, fumarate hydratase class II; TCA cycle	99.97
1jsw_A	478	L-aspartase, L-aspartate ammonia-lyase; amino acid	99.97
3gtd_A	482	Fumarase C, fumarate hydratase class II; structura	99.97
1yfm_A	488	Fumarase, YFUM; lyase, krebs cycle, active site wa	99.97
3e04_A	490	Fumarase, fumarate hydratase; TCA cycle, structura	99.97
3r6q_A	468	Aspartase; aspartate ammonia lyase, lyase; 2.40A {	99.97
2qga_B	465	Adenylosuccinate lyase; malaria, PV003765, SGC, st	99.97
2ptr_A	462	Adenylosuccinate lyase; mutant-substrate complex;	99.97
4adm_A	495	Fumarase C, fumarate hydratase class II; lyase, tr	99.96
2ptr_A	462	Adenylosuccinate lyase; mutant-substrate complex;	99.96
3ocf_A	478	Fumarate lyase:delta crystallin; fumarase, brucell	99.96
2qga_B	465	Adenylosuccinate lyase; malaria, PV003765, SGC, st	99.96
3r6q_A	468	Aspartase; aspartate ammonia lyase, lyase; 2.40A {	99.96
3gtd_A	482	Fumarase C, fumarate hydratase class II; structura	99.96
3bhg_A	459	Adenylosuccinate lyase; structural G PSI-2, protei	99.96
4hgv_A	495	Fumarase C, fumarate hydratase class II; nysgrc, P	99.96
3bhg_A	459	Adenylosuccinate lyase; structural G PSI-2, protei	99.96
3e04_A	490	Fumarase, fumarate hydratase; TCA cycle, structura	99.96
1jsw_A	478	L-aspartase, L-aspartate ammonia-lyase; amino acid	99.96
4adm_A	495	Fumarase C, fumarate hydratase class II; lyase, tr	99.96
1fur_A	467	Fumarase C, FUMC; hydrolyase, carbon oxygen lyase,	99.96
4hgv_A	495	Fumarase C, fumarate hydratase class II; nysgrc, P	99.96
3ocf_A	478	Fumarate lyase:delta crystallin; fumarase, brucell	99.96
1vdk_A	466	Fumarase C, fumarate hydratase class II; TCA cycle	99.96
1yfm_A	488	Fumarase, YFUM; lyase, krebs cycle, active site wa	99.95
2fel_A	359	3-carboxy-CIS,CIS-muconate lactonizing enzyme; bio	99.94
1tj7_A	457	Argininosuccinate lyase; crystallin, E. coli, fuma	99.9
2e9f_A	462	Argininosuccinate lyase; alpha helix bundle; HET:	99.89
1k7w_A	468	Delta 2 crystallin; eye lens protein, argininosucc	99.89

>4eei_A Adenylosuccinate lyase; structural genomics, niaid, national institute of allergy AN infectious diseases; HET: AMP; 1.92A {Francisella tularensis subsp}

Probab=100.00  E-value=1.3e-37  Score=328.43  Aligned_cols=192  Identities=21%  Similarity=0.318  Sum_probs=155.7

Q ss_pred             HHHHHHHHHHHcCCCCCccccccccCccHHHHHHHHHHHHHHHHHHHHHHHHHHhh--hhhccccccCCCCcCcCCCCCC
Q psy14319        229 VKALDRLVTKKAGFTSSHIITGQTYSRKVDVIVTGVLSSLGASIHKLATDLRLLAH--MKEIEEPFESTQIGSSAMAYKR  306 (486)
Q Consensus       229 ~~~i~~~lA~~LGf~~a~~~~~~~~~rd~~~e~~~~l~~~~~~l~rla~Dl~l~ss--~~el~~~~~~~~~GSSiMPqKr  306 (486)
                      .+.+++++++.|||... +..+++++||+++|++++++.++++|+|||+||++|++  |||+.+||+++++|||||||||
T Consensus       191 ~~~~~~~~a~~LG~~~~-~~~~~v~~rD~~~e~~~~l~~~a~~L~kia~Di~ll~~~e~gel~~~f~~~q~GSSiMP~K~  269 (438)
T 4eei_A          191 TTEDEKKAADILGLPVE-EVSTQVIPRDRIAKLISIHGLIASAIERLAVEIRHLHRSDVFEVYEGFSKGQKGSSTMPHKK  269 (438)
T ss_dssp             CHHHHHHHHHHHTCCBC-SSCSSSCCTHHHHHHHHHHHHHHHHHHHHHHHHHHHHSTTTCSEECCC------------CC
T ss_pred             cHHHHHHHHHHcCCCCC-CccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccceeccccccCCCCCCCCCCCC
Confidence            36788999999999854 45688999999999999999999999999999999997  9999999999999999999999


Q ss_pred             CchHHHHHHHHHHHHHHHhHHHHHHhhhhHhhhcccccCCCCCCccccchhhhhhccCCcchhhhhhccCCCCccccccC
Q psy14319        307 NPMRSERLCSLARFLMSLHQNSLATASTQWMERTLDDSANRFPTKSVFSCVTQVKQHGKENDLVDRIRADPYFAPILNQM  386 (486)
Q Consensus       307 NP~~~E~~~~~a~~~~g~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~g~~~d~~~~~~~~~~~~~~~~~~  386 (486)
                      ||+.+|+++++|++++|++.+.+. ....|+|||+.+|.                                         
T Consensus       270 NP~~~E~i~~~a~~v~g~~~~~~~-~~~~~~erdl~~~~-----------------------------------------  307 (438)
T 4eei_A          270 NPISTENLTGMARMLRSHVSIALE-NCVLWHERDISHSS-----------------------------------------  307 (438)
T ss_dssp             CCHHHHHHHHHHHHHHHHHHHHHH-TTCCCTTCCSHHHH-----------------------------------------
T ss_pred             CcHHHHHHHHHHHHHHHHHHHHHh-ccchhcCccchhhH-----------------------------------------
Confidence            999999999999999999865433 34556666664321                                         


Q ss_pred             CCCCCCccccCCchhHhhhhhhcccchHHHHHHHHHHHHHHHhchhCCeeCHHHHHHHHhccCChhHHHHHHHHHHHcCC
Q psy14319        387 PTLLDPKSFYGRAPEQQRLSAKGIHTLSESFLTTDCLLITLQNVLEGLVVYPKVIQRHIDQELPFMATENIIMAMVKAGG  466 (486)
Q Consensus       387 ~~~~~p~~~~~~~~~q~~~~~~~~~~l~~~~~~~~~~l~~~~~~l~~l~v~~~~m~~~l~~~~~~~~a~~~~~~L~~~g~  466 (486)
                                           .+|..+++++.++..++.++..++++|+||+++|+++++.++++++||+++++||++|+
T Consensus       308 ---------------------~er~~l~~~~~~~~~~l~~~~~~l~~l~vn~erm~~~l~~~~~~~~a~~~a~~Lv~~g~  366 (438)
T 4eei_A          308 ---------------------AERFYLPDNFGIMVYALRRMKNTIDNLVVQRDIIEDRVRSTSAYLSSFYLHFLVANTPF  366 (438)
T ss_dssp             ---------------------HHHHHHHHHHHHHHHHHHHHHHHHHHCEECHHHHHHHHHHCCTTHHHHHHHHHHHHSSC
T ss_pred             ---------------------HHHHHHHHHHHHHHHHHHHHHHHHccCEECHHHHHHHHHhccCHHHHHHHHHHHHHcCC
Confidence                                 13568999999999999999999999999999999999999999999999999999999


Q ss_pred             ChHHHHHHHHHHHHHhhh
Q psy14319        467 DRQVCHEKIRVLSHQAGA  484 (486)
Q Consensus       467 ~fr~Ah~~v~~~~~~a~~  484 (486)
                      |||+||++|++++++|.+
T Consensus       367 ~~~~Ah~~v~~~~~~a~~  384 (438)
T 4eei_A          367 MREDCYKIVQQVAFDLKQ  384 (438)
T ss_dssp             CHHHHHHHHHHC------
T ss_pred             CHHHHHHHHHHHHHHHhc
Confidence            999999999999998864

>2j91_A Adenylosuccinate lyase; disease mutation, adenylosuccinase, succino AMP-lyase, purin biosynthesis, adenylosuccinase DEFI AMP, ADSL, saicar, purine; HET: AMP; 1.8A {Homo sapiens} PDB: 2vd6_A*

Probab=100.00  E-value=5.4e-37  Score=328.70  Aligned_cols=214  Identities=66%  Similarity=0.940  Sum_probs=174.9

Q ss_pred             cCCCCCCcccccccccCCCCCCCcHHHHHHHHHHHcCCCCCccccccccCccHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q psy14319        205 IIPDNRLSSHHTTKRSGRPGDGDKVKALDRLVTKKAGFTSSHIITGQTYSRKVDVIVTGVLSSLGASIHKLATDLRLLAH  284 (486)
Q Consensus       205 ~~~~~~g~~~~~~~~~~~~~~g~~~~~i~~~lA~~LGf~~a~~~~~~~~~rd~~~e~~~~l~~~~~~l~rla~Dl~l~ss  284 (486)
                      +++|..||..  .+.+.|.+++...+.+.+++++.|||..+.+.++++++||+++|++++++.++++|+|||+||++|++
T Consensus       219 g~gG~~GT~a--~~~~~f~~D~~~~~~v~~~~a~~LGl~~~~~~s~~~~~rd~~~e~~~~la~la~~L~kia~Dirll~s  296 (503)
T 2j91_A          219 GVKGTTGTQA--SFLQLFEGDDHKVEQLDKMVTEKAGFKRAFIITGQTYTRKVDIEVLSVLASLGASVHKICTDIRLLAN  296 (503)
T ss_dssp             CSCCTTSSCH--HHHHHTTTCHHHHHHHHHHHHHHTTCSCBCSCCSSSCCTHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             cccccccchh--hhccccCCchHHHHHHHHHHHHHhCCCCCCCcccccccChHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence            4567777752  12222444444567888999999999966566779999999999999999999999999999999999


Q ss_pred             hhhccccccCCCCcCcCCCCCCCchHHHHHHHHHHHHHHHhHHHHHHhhhhHhhhcccccCCCCCCccccchhhhhhccC
Q psy14319        285 MKEIEEPFESTQIGSSAMAYKRNPMRSERLCSLARFLMSLHQNSLATASTQWMERTLDDSANRFPTKSVFSCVTQVKQHG  364 (486)
Q Consensus       285 ~~el~~~~~~~~~GSSiMPqKrNP~~~E~~~~~a~~~~g~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~g  364 (486)
                      ++||.+||..+++|||||||||||+.+|.++++|++++|++++++..+...|+|||++.|.+                  
T Consensus       297 ~~ei~ep~~~~q~GSSiMP~K~NPv~~E~i~~~a~~v~g~~~~~~~~~~~~~~erd~~~s~~------------------  358 (503)
T 2j91_A          297 LKEMEEPFEKQQIGSSAMPYKRNPMRSERCCSLARHLMTLVMDPLQTASVQWFERTLDDSAN------------------  358 (503)
T ss_dssp             HTSEECCC-----------CCCCCHHHHHHHHHHHHHHHTTHHHHHHHHTCCTTCCGGGHHH------------------
T ss_pred             cceeeccccCCCCCCCCCccccCcHHHHHHHHHHHHHHHHHHHHHHHHccCcccccccchHH------------------
Confidence            99999999889999999999999999999999999999999988888888899999876532                  


Q ss_pred             CcchhhhhhccCCCCccccccCCCCCCCccccCCchhHhhhhhhcccchHHHHHHHHHHHHHHHhchhCCeeCHHHHHHH
Q psy14319        365 KENDLVDRIRADPYFAPILNQMPTLLDPKSFYGRAPEQQRLSAKGIHTLSESFLTTDCLLITLQNVLEGLVVYPKVIQRH  444 (486)
Q Consensus       365 ~~~d~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~q~~~~~~~~~~l~~~~~~~~~~l~~~~~~l~~l~v~~~~m~~~  444 (486)
                                                                  .|..+++++.+++.++.++..|+++|+||+++|+++
T Consensus       359 --------------------------------------------~~~~l~~~~~~~~~~l~~~~~~l~gL~vn~erm~~~  394 (503)
T 2j91_A          359 --------------------------------------------RRICLAEAFLTADTILNTLQNISEGLVVYPKVIERR  394 (503)
T ss_dssp             --------------------------------------------HHHHHHHHHHHHHHHHHHHHHHHHSCEECHHHHHHH
T ss_pred             --------------------------------------------HHhhHHHHHHHHHHHHHHHHHHHcCCEECHHHHHHH
Confidence                                                        234789999999999999999999999999999999


Q ss_pred             HhccCChhHHHHHHHHHHHcCCChHHHHHHHHHHHHHh
Q psy14319        445 IDQELPFMATENIIMAMVKAGGDRQVCHEKIRVLSHQA  482 (486)
Q Consensus       445 l~~~~~~~~a~~~~~~L~~~g~~fr~Ah~~v~~~~~~a  482 (486)
                      ++.++++++|+.+++.|+++|++|++||++|++.++++
T Consensus       395 l~~s~~~~ate~v~~~lv~~G~~~~~Ah~~v~~~a~~~  432 (503)
T 2j91_A          395 IRQELPFMATENIIMAMVKAGGSRQDCHEKIRVLSQQA  432 (503)
T ss_dssp             HHHHHHHHSHHHHHHHHC--CCCHHHHHHHHHHHHHHH
T ss_pred             HHhccChHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHh
Confidence            99998988889999999999999999999997777655

>1c3c_A Protein (adenylosuccinate lyase); purine biosynthesis; 1.80A {Thermotoga maritima} SCOP: a.127.1.1 PDB: 1c3u_A

Probab=100.00  E-value=1.9e-36  Score=319.20  Aligned_cols=205  Identities=21%  Similarity=0.337  Sum_probs=175.0

Q ss_pred             cCCCCCCcccccccccCCCCCCCcHHHHHHHHHHHcCCCCCccccccccCccHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q psy14319        205 IIPDNRLSSHHTTKRSGRPGDGDKVKALDRLVTKKAGFTSSHIITGQTYSRKVDVIVTGVLSSLGASIHKLATDLRLLAH  284 (486)
Q Consensus       205 ~~~~~~g~~~~~~~~~~~~~~g~~~~~i~~~lA~~LGf~~a~~~~~~~~~rd~~~e~~~~l~~~~~~l~rla~Dl~l~ss  284 (486)
                      .++|..||..+            ..+.+++++++.|||+.+.. .+++.+||+++|++++++.++++|+|||+||++|++
T Consensus       178 ~lGgAvGt~~~------------~~~~~~~~~a~~LGl~~~~~-~d~~~~rD~~~e~~~~l~~~a~~L~kia~Dl~ll~~  244 (429)
T 1c3c_A          178 KISGAVGNYAN------------VPPEVEEKALSYLGLKPEPV-STQVVPRDRHAFYLSTLAIVAAGIERIAVEIRHLQR  244 (429)
T ss_dssp             CCCCTTSSCSS------------SCHHHHHHHHHHTTCEECSS-CSSSCCTHHHHHHHHHHHHHHHHHHHHHHHHHHHTS
T ss_pred             CCchhhcCCcc------------CCHHHHHHHHHHcCCCCCCC-CcCccCcHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence            36667777532            12579999999999986532 246679999999999999999999999999999999


Q ss_pred             --hhhccccccCCCCcCcCCCCCCCchHHHHHHHHHHHHHHHhHHHHHHhhhhHhhhcccccCCCCCCccccchhhhhhc
Q psy14319        285 --MKEIEEPFESTQIGSSAMAYKRNPMRSERLCSLARFLMSLHQNSLATASTQWMERTLDDSANRFPTKSVFSCVTQVKQ  362 (486)
Q Consensus       285 --~~el~~~~~~~~~GSSiMPqKrNP~~~E~~~~~a~~~~g~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~  362 (486)
                        |||+.+|+.++++|||||||||||+.+|.++++|++++|++.+++.. ..+|+|||+.+|.                 
T Consensus       245 ~e~~El~~p~~~~q~GSSiMP~K~NP~~~E~i~~~a~~v~g~~~~~~~~-~~~~~erd~~~~~-----------------  306 (429)
T 1c3c_A          245 TEVLEVEEPFRKGQRGSSAMPHKKNPITCERLTGLSRMMRAYVDPSLEN-IALWHERDISHSS-----------------  306 (429)
T ss_dssp             TTTCSEECCCCC-----CCCTTCCCCHHHHHHHHHHHHHHHTHHHHHHT-TCCSTTCCSHHHH-----------------
T ss_pred             cccchhccccccCCCcCCCCCCCCCcHHHHHHHHHHHHHHHHHHHHHhc-CCccccccccccH-----------------
Confidence              99999999889999999999999999999999999999999988765 4577777764321                 


Q ss_pred             cCCcchhhhhhccCCCCccccccCCCCCCCccccCCchhHhhhhhhcccchHHHHHHHHHHHHHHHhchhCCeeCHHHHH
Q psy14319        363 HGKENDLVDRIRADPYFAPILNQMPTLLDPKSFYGRAPEQQRLSAKGIHTLSESFLTTDCLLITLQNVLEGLVVYPKVIQ  442 (486)
Q Consensus       363 ~g~~~d~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~q~~~~~~~~~~l~~~~~~~~~~l~~~~~~l~~l~v~~~~m~  442 (486)
                                                                   .+|..+++++.++..++.++..++++|+||+++|+
T Consensus       307 ---------------------------------------------~~~~~l~~~~~~~~~~l~~~~~~l~~l~vn~erm~  341 (429)
T 1c3c_A          307 ---------------------------------------------VERYVFPDATQTLYYMIVTATNVVRNMKVNEERMK  341 (429)
T ss_dssp             ---------------------------------------------HHHHHHHHHHHHHHHHHHHHHHHHHHCEECHHHHH
T ss_pred             ---------------------------------------------HHHHHHHHHHHHHHHHHHHHHHHHCcCeeCHHHHH
Confidence                                                         13568899999999999999999999999999999


Q ss_pred             HHHhccCChhHHHHHHHHHHHcCCChHHHHHHHHHHHHHhhhc
Q psy14319        443 RHIDQELPFMATENIIMAMVKAGGDRQVCHEKIRVLSHQAGAQ  485 (486)
Q Consensus       443 ~~l~~~~~~~~a~~~~~~L~~~g~~fr~Ah~~v~~~~~~a~~~  485 (486)
                      ++++.+.++++||+++++|+++|+|||+||++|+++++.|.++
T Consensus       342 ~~l~~s~~~~~a~~la~~L~~~gig~~~A~~iv~~~~~~a~~~  384 (429)
T 1c3c_A          342 KNIDLTKGLVFSQRVLLKLIEKGLTRKEAYDIVQRNALKTWNS  384 (429)
T ss_dssp             HHHTTTTTGGGHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHTS
T ss_pred             HHHHhccChHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHh
Confidence            9999999999999999999999999999999999999998653

>1yis_A Adenylosuccinate lyase; structural genomics, PSI, P structure initiative, southeast collaboratory for structura genomics, secsg; 2.40A {Caenorhabditis elegans}

Probab=100.00  E-value=2.7e-37  Score=329.68  Aligned_cols=215  Identities=43%  Similarity=0.609  Sum_probs=154.9

Q ss_pred             cCCCCCCcccccccccCCCCCCCcHHHHHHHHHHHcCCCCCccccccccCccHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q psy14319        205 IIPDNRLSSHHTTKRSGRPGDGDKVKALDRLVTKKAGFTSSHIITGQTYSRKVDVIVTGVLSSLGASIHKLATDLRLLAH  284 (486)
Q Consensus       205 ~~~~~~g~~~~~~~~~~~~~~g~~~~~i~~~lA~~LGf~~a~~~~~~~~~rd~~~e~~~~l~~~~~~l~rla~Dl~l~ss  284 (486)
                      +++|..||..+  +.+.|.++....+.+.+++++.|||..+.+.++++++||+++|++++++.++++|+|||+||++|++
T Consensus       193 g~gg~~GT~a~--~~~~f~~d~~~~~~v~~~~a~~LG~~~~~~~s~~~~~rd~~~e~~~~l~~~a~~L~kia~Di~ll~s  270 (478)
T 1yis_A          193 GIKGATGTQDS--FLTLFAGDESKVEALDELVTKKANFSNRFLITGQTYSRQQDSQLVFSLSLLGAAAKKVCTDIRVLQA  270 (478)
T ss_dssp             CSCTTTSSCHH--HHHHTTTCHHHHHHHHHHHHHHTTCSCBCSSCSSSCCTHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             cccchhccchh--hhcccCcchhhHHHHHHHHHHHhCcCCCCCccccccCChHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence            45667777521  2222344444457788999999999966566779999999999999999999999999999999999


Q ss_pred             hhhccccccCCCCcCcCCCCCCCchHHHHHHHHHHHHHHHhHHHHHHhhhhHhhhcccccCCCCCCccccchhhhhhccC
Q psy14319        285 MKEIEEPFESTQIGSSAMAYKRNPMRSERLCSLARFLMSLHQNSLATASTQWMERTLDDSANRFPTKSVFSCVTQVKQHG  364 (486)
Q Consensus       285 ~~el~~~~~~~~~GSSiMPqKrNP~~~E~~~~~a~~~~g~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~g  364 (486)
                      ++||.+||..+++|||||||||||+.+|.++++|++++|++++++..+...|+|||++.|.+                  
T Consensus       271 ~~el~~p~~~~q~GSSiMP~K~NP~~~E~i~~~a~~v~g~~~~~~~~~~~~~~er~~~~~~~------------------  332 (478)
T 1yis_A          271 FGELLEPFEKDQIGSSAMPYKKNPMKSERCCALSRKLINAPQEALTILADQGLERTLDDSAG------------------  332 (478)
T ss_dssp             TTSEECC-------------CCCCHHHHHHHHHHHHHHTSHHHHHHHHHTCCTTCCGGGHHH------------------
T ss_pred             hhheeccccCCCCccccCCcccCCHHHHHHHHHHHHHHHhHHHHHHHhccCCcccCcchHHH------------------
Confidence            99999999888999999999999999999999999999999988888888899998875432                  


Q ss_pred             CcchhhhhhccCCCCccccccCCCCCCCccccCCchhHhhhhhhcccchHHHHHHHHHHHHHHHhchhCCeeCHHHHHHH
Q psy14319        365 KENDLVDRIRADPYFAPILNQMPTLLDPKSFYGRAPEQQRLSAKGIHTLSESFLTTDCLLITLQNVLEGLVVYPKVIQRH  444 (486)
Q Consensus       365 ~~~d~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~q~~~~~~~~~~l~~~~~~~~~~l~~~~~~l~~l~v~~~~m~~~  444 (486)
                                                                  .|..+++++.+++.++.++..|+++|+||+++|+++
T Consensus       333 --------------------------------------------~~~~l~~~~~~~~~~l~~~~~~l~gl~vn~erm~~~  368 (478)
T 1yis_A          333 --------------------------------------------RRMLIPDVLLTAEALLTTLQNIFEGLSVQTDNVKKI  368 (478)
T ss_dssp             --------------------------------------------HHHHHHHHHHHHHHHHHHHHHHHHHCEECHHHHHHH
T ss_pred             --------------------------------------------HHHHHHHHHHHHHHHHHHHHHHHcCCEECHHHHHHH
Confidence                                                        234789999999999999999999999999999999


Q ss_pred             HhccCChhHHHHHHHHHHHcCCChHHHHHHHHHHHHHhh
Q psy14319        445 IDQELPFMATENIIMAMVKAGGDRQVCHEKIRVLSHQAG  483 (486)
Q Consensus       445 l~~~~~~~~a~~~~~~L~~~g~~fr~Ah~~v~~~~~~a~  483 (486)
                      ++.++++++++.+++.|+++|++||+||++|++++.++.
T Consensus       369 l~~~~~~~~te~v~~~l~~~G~~~~~Ah~~v~~~a~~~~  407 (478)
T 1yis_A          369 VEDEIAFLGLEKAMMMLTEEGVDRQQAHAVIRKTALEAK  407 (478)
T ss_dssp             HHHHHHHHHHHHHHHHC----------------------
T ss_pred             HHhCCChHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHH
Confidence            999888888888999999999999999999999888764

>1tj7_A Argininosuccinate lyase; crystallin, E. coli, fumarase, ASPA lyase; 2.44A {Escherichia coli} SCOP: a.127.1.1

Probab=100.00  E-value=3.8e-36  Score=318.94  Aligned_cols=165  Identities=14%  Similarity=0.145  Sum_probs=135.4

Q ss_pred             hhhhhHhccHHHHHHHHHHHhhhcCCCceeecccCcccccchhhhhhhhhhhhHHHHHHcCCCCCCCcc-cccccccHHH
Q psy14319          2 KFYKYVLGDGDKVKALDRLVTKKAGFNSSHIITGQTYSRKVDVIVTGVLSSLGASIHKKAGFNSSHIIT-GQTYSRKVDV   80 (486)
Q Consensus         2 ~~~~~~~~d~~r~~~~~~~~~~~~g~~~~~a~~g~~~~r~~d~~~~Gt~a~~~~~~a~~LGf~~~~~~~-~av~~RD~~~   80 (486)
                      +|+++|.||.+|++++.++++.. ++|| ++++|+.++  +|+          ++++++|||..+..++ +++++||+++
T Consensus       171 ~~~~~l~r~~~rL~~~~~~~~~~-~lGg-aA~aGt~~~--~~~----------~~la~~LGl~~~~~n~~~~~~~rD~~~  236 (457)
T 1tj7_A          171 AYVEMLARDESRLQDALKRLDVS-PLGC-GALAGTAYE--IDR----------EQLAGWLGFASATRNSLDSVSDRDHVL  236 (457)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHCCB-CTTC-TTTTCCSSC--CCH----------HHHHHHHTCSSBCSCHHHHHHCCHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHhhhc-Cccc-cccCCCCCC--CCH----------HHHHHHcCCCCCCCChHHHHHccHHHH
Confidence            79999999999999999999853 4434 588999986  774          6899999999886555 9999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHh--cc--ccccccccCCCCCccCCCCCCchHHHHHHHHHHHHHHHHHHHH--Hhhc
Q psy14319         81 IVTGVLSSLGASIHKLATDLRLLAH--MK--EIEEPFESTQIGSSAMAYKRNPMRSERLCSLARFLMSLHQNSL--ATAS  154 (486)
Q Consensus        81 e~~~~la~la~~LsRlA~DL~l~ss--~~--el~e~~~~~~~GSSiMPqKrNP~~~E~ir~~a~~v~g~~~~~l--~~~~  154 (486)
                      |++++++.++++|+|||+||++|++  |+  |++++++   +|||||||||||+.+|+++++|+++.|+..+++  ..++
T Consensus       237 e~~~~l~~~a~~L~kia~Di~ll~s~e~g~iel~e~~~---~GSSiMP~K~NP~~~E~i~~~a~~v~g~~~~~~~~~~~~  313 (457)
T 1tj7_A          237 ELLSAAAIGMVHLSRFAEDLIFFNTGEAGFVELSDRVT---SGSSLMPQKKNPDALELIRGKCGRVQGALTGMMMTLKGL  313 (457)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHTSTTTCCEECCGGGC---BCCTTCTTCCBCHHHHHHHHTHHHHHHHHHHHHHHHTTC
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhCCCCCceeccCCCC---CCCCCCCCCCCcHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence            9999999999999999999999997  88  6666653   799999999999999999999999999999754  4567


Q ss_pred             cccccCCCchhhHhhhchHHHHHHHHHHHHHH
Q psy14319        155 TQWMERTLDDSANRRLTLSESFLTTDCLLITL  186 (486)
Q Consensus       155 ~~~~erDl~~~~~~~~~l~~a~~~~~~~l~~~  186 (486)
                      |.+||||+++.   |..+++++.++..++..+
T Consensus       314 p~~~~RDl~~~---~~~l~~s~~~~~~~l~~~  342 (457)
T 1tj7_A          314 PLAYNKDMQED---KEGLFDALDTWLDCLHMA  342 (457)
T ss_dssp             CSSCCGGGGGH---HHHHHHHHHHHHHHHHHH
T ss_pred             cHHhhcchhhH---HhHHHHHHHHHHHHHHHH
Confidence            88999998753   344444444443333333

>2pfm_A Adenylosuccinate lyase; PURB, purine biosynthesis, B anthracis; 2.00A {Bacillus anthracis} PDB: 1f1o_A 2x75_A*

Probab=100.00  E-value=2.8e-36  Score=319.03  Aligned_cols=205  Identities=23%  Similarity=0.381  Sum_probs=179.8

Q ss_pred             cCCCCCCcccccccccCCCCCCCcHHHHHHHHHHHcCCCCCccccccccCccHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q psy14319        205 IIPDNRLSSHHTTKRSGRPGDGDKVKALDRLVTKKAGFTSSHIITGQTYSRKVDVIVTGVLSSLGASIHKLATDLRLLAH  284 (486)
Q Consensus       205 ~~~~~~g~~~~~~~~~~~~~~g~~~~~i~~~lA~~LGf~~a~~~~~~~~~rd~~~e~~~~l~~~~~~l~rla~Dl~l~ss  284 (486)
                      .++|..||..+            ..+.+++++++.|||+.+.. .+++.+||+++|++++++.++++|+|||+||++|++
T Consensus       190 ~lGgAvGt~~~------------~~~~~~~~~a~~LGl~~~~~-~d~~~~rD~~~e~~~~l~~la~~L~kia~Dl~ll~~  256 (444)
T 2pfm_A          190 KLSGAVGTYAN------------IDPFVEKYVCENLGLEAAPI-STQTLQRDRHAHYMSTLALIATSIEKMAVEIRGLQK  256 (444)
T ss_dssp             CCCCTTSSCTT------------SCHHHHHHHHHHTTCEECSS-CSSSCCTHHHHHHHHHHHHHHHHHHHHHHHHHHHTS
T ss_pred             CCchhhccCCc------------CCHHHHHHHHHHhCCCCCCC-CcCccCcHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence            36667777531            12578999999999986532 246679999999999999999999999999999999


Q ss_pred             --hhhccccccCCCCcCcCCCCCCCchHHHHHHHHHHHHHHHhHHHHHHhhhhHhhhcccccCCCCCCccccchhhhhhc
Q psy14319        285 --MKEIEEPFESTQIGSSAMAYKRNPMRSERLCSLARFLMSLHQNSLATASTQWMERTLDDSANRFPTKSVFSCVTQVKQ  362 (486)
Q Consensus       285 --~~el~~~~~~~~~GSSiMPqKrNP~~~E~~~~~a~~~~g~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~  362 (486)
                        ||||.+|+.++++|||||||||||+.+|.++++|++++|+..+++.. ..+|+|||+.+|.                 
T Consensus       257 ~e~gEl~~p~~~~q~GSSiMP~K~NP~~~E~i~~~a~~v~g~~~~~~~~-~~~~~erd~~~~~-----------------  318 (444)
T 2pfm_A          257 SETREVEEAFAKGQKGSSAMPHKRNPIGSENMTGLARVIRGYMMTAYEN-VPLWHERDISHSS-----------------  318 (444)
T ss_dssp             TTTCSEECCCCTTCCSCSSCTTCCCCHHHHHHHHHHHHHHHHHHHHHHT-SCCCTTCCSHHHH-----------------
T ss_pred             ccccccccccccCCCcCccCCcccCCHHHHHHHHHHHHHHHHHHHHHHh-CcccccccccchH-----------------
Confidence              99999999889999999999999999999999999999999988765 4577777764321                 


Q ss_pred             cCCcchhhhhhccCCCCccccccCCCCCCCccccCCchhHhhhhhhcccchHHHHHHHHHHHHHHHhchhCCeeCHHHHH
Q psy14319        363 HGKENDLVDRIRADPYFAPILNQMPTLLDPKSFYGRAPEQQRLSAKGIHTLSESFLTTDCLLITLQNVLEGLVVYPKVIQ  442 (486)
Q Consensus       363 ~g~~~d~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~q~~~~~~~~~~l~~~~~~~~~~l~~~~~~l~~l~v~~~~m~  442 (486)
                                                                   .+|..+++++.++..++.++..|+++|+||++||+
T Consensus       319 ---------------------------------------------~~~~~l~~~~~~~~~~l~~~~~~l~gl~vn~erm~  353 (444)
T 2pfm_A          319 ---------------------------------------------AERVILPDATIALNYMLNRFGNIVKNLTVYPENMK  353 (444)
T ss_dssp             ---------------------------------------------HHHHHHHHHHHHHHHHHHHHHHHHHTCEECHHHHH
T ss_pred             ---------------------------------------------HHHHHHHHHHHHHHHHHHHHHHHHccCEECHHHHH
Confidence                                                         13568999999999999999999999999999999


Q ss_pred             HHHhccCChhHHHHHHHHHHHcCCChHHHHHHHHHHHHHhhhc
Q psy14319        443 RHIDQELPFMATENIIMAMVKAGGDRQVCHEKIRVLSHQAGAQ  485 (486)
Q Consensus       443 ~~l~~~~~~~~a~~~~~~L~~~g~~fr~Ah~~v~~~~~~a~~~  485 (486)
                      ++++.+.++++||+++++|+++|+|||+||++|+++++.|.++
T Consensus       354 ~~l~~s~~~~~ae~la~~L~~~gig~~~A~~iv~~~~~~a~~~  396 (444)
T 2pfm_A          354 RNMTRTYGLIYSQRVMLTLIDKGMVREEAYDIVQPKAMEAWET  396 (444)
T ss_dssp             HHHTTTTTGGGHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHhCcCchHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHH
Confidence            9999999999999999999999999999999999999998653

>1re5_A 3-carboxy-CIS,CIS-muconate cycloisomerase; homotetramer, fumarase class II cycloisomerase, molecular EV isomerase; HET: CIT; 2.60A {Pseudomonas putida} SCOP: a.127.1.1

Probab=100.00  E-value=5.3e-36  Score=317.59  Aligned_cols=205  Identities=22%  Similarity=0.214  Sum_probs=171.2

Q ss_pred             CCCCCCcccccccccCCCCCCCcHHHHHHHHHHHcCCCCCccccccccCccHHHHHHHHHHHHHHHHHHHHHHHHHHhh-
Q psy14319        206 IPDNRLSSHHTTKRSGRPGDGDKVKALDRLVTKKAGFTSSHIITGQTYSRKVDVIVTGVLSSLGASIHKLATDLRLLAH-  284 (486)
Q Consensus       206 ~~~~~g~~~~~~~~~~~~~~g~~~~~i~~~lA~~LGf~~a~~~~~~~~~rd~~~e~~~~l~~~~~~l~rla~Dl~l~ss-  284 (486)
                      ++|+.||....         +..+..+.+++++.|||..+.  ..++++||+++|++++++.++++|+|||+||++|++ 
T Consensus       192 lGGAvGt~~~~---------~~~~~~~~~~la~~LG~~~~~--~~~~~~rD~~~e~~~~l~~la~~L~kia~Dl~ll~~~  260 (450)
T 1re5_A          192 FGGASGSLAAL---------GSKAMPVAEALAEQLKLTLPE--QPWHTQRDRLVEFASVLGLVAGSLGKFGRDISLLMQT  260 (450)
T ss_dssp             CCCTTSSCGGG---------GGGHHHHHHHHHHHHTCBCCS--SCCTTCCHHHHHHHHHHHHHHHHHHHHHHHHHHHTST
T ss_pred             CcchhcCCccc---------CcchHHHHHHHHHHhCcCCCC--cccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence            56677876421         122558899999999998753  347899999999999999999999999999999999 


Q ss_pred             -hhhccccccCCCCcCcCCCCCCCchHHHHHHHHHHHHHHHhHHHHHHhhhhHhhhcccccCCCCCCccccchhhhhhcc
Q psy14319        285 -MKEIEEPFESTQIGSSAMAYKRNPMRSERLCSLARFLMSLHQNSLATASTQWMERTLDDSANRFPTKSVFSCVTQVKQH  363 (486)
Q Consensus       285 -~~el~~~~~~~~~GSSiMPqKrNP~~~E~~~~~a~~~~g~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~  363 (486)
                       ||||.+|+.++++|||||||||||+.+|.++++|++++|++.+++.. ...|+|||+.+|..                 
T Consensus       261 e~~El~~p~~~~q~GSSiMP~K~NP~~~E~i~~~a~~v~g~~~~~~~~-~~~~~erd~~~~~~-----------------  322 (450)
T 1re5_A          261 EAGEVFEPSAPGKGGSSTMPHKRNPVGAAVLIGAATRVPGLLSTLFAA-MPQEHERSLGLWHA-----------------  322 (450)
T ss_dssp             TTCCEECCCCC----------CCCCHHHHHHHHHHHHHHHHHHHHHHT-CCCCTTBCSSTTTT-----------------
T ss_pred             CcceeecccccCCCccccCCCCcCCHHHHHHHHHHHHHHHHHHHHHHh-ChhhccccccchHH-----------------
Confidence             99999999888999999999999999999999999999999998865 35678887654321                 


Q ss_pred             CCcchhhhhhccCCCCccccccCCCCCCCccccCCchhHhhhhhhcccchHHHHHHHHHHHHHHHhchhCCeeCHHHHHH
Q psy14319        364 GKENDLVDRIRADPYFAPILNQMPTLLDPKSFYGRAPEQQRLSAKGIHTLSESFLTTDCLLITLQNVLEGLVVYPKVIQR  443 (486)
Q Consensus       364 g~~~d~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~q~~~~~~~~~~l~~~~~~~~~~l~~~~~~l~~l~v~~~~m~~  443 (486)
                                                                   +|..+++++.++..++.++..++++|+||+++|++
T Consensus       323 ---------------------------------------------~~~~l~~~~~~~~~~l~~~~~~l~~l~vn~erm~~  357 (450)
T 1re5_A          323 ---------------------------------------------EWETLPDICCLVSGALRQAQVIAEGMEVDAARMRR  357 (450)
T ss_dssp             ---------------------------------------------HHHHHHHHHHHHHHHHHHHHHHHHHCEECHHHHHH
T ss_pred             ---------------------------------------------HHHHHHHHHHHHHHHHHHHHHHhCcCEECHHHHHH
Confidence                                                         35689999999999999999999999999999999


Q ss_pred             HHhccCChhHHHHHHHHHHHcCCChHHHHHHHHHHHHHhhhc
Q psy14319        444 HIDQELPFMATENIIMAMVKAGGDRQVCHEKIRVLSHQAGAQ  485 (486)
Q Consensus       444 ~l~~~~~~~~a~~~~~~L~~~g~~fr~Ah~~v~~~~~~a~~~  485 (486)
                      +++.+.++++||+++++|++ |+|||+||++|++++++|.++
T Consensus       358 ~l~~s~~~~~Ae~l~~~L~~-gig~~~A~~~v~~~~~~a~~~  398 (450)
T 1re5_A          358 NLDLTQGLVLAEAVSIVLAQ-RLGRDRAHHLLEQCCQRAVAE  398 (450)
T ss_dssp             HHTTSTTGGGHHHHHHHHHH-HSCHHHHHHHHHHHHHHHHHT
T ss_pred             HHHhCcChhHHHHHHHHHhc-CCCHHHHHHHHHHHHHHHHHh
Confidence            99999999999999999999 899999999999999998654

>2e9f_A Argininosuccinate lyase; alpha helix bundle; HET: ARG; 2.80A {Thermus thermophilus}

Probab=100.00  E-value=4.6e-36  Score=318.74  Aligned_cols=178  Identities=19%  Similarity=0.252  Sum_probs=141.8

Q ss_pred             hhhhhHhccHHHHHHHHHHHhhhcCCCceeecccCcccccchhhhhhhhhhhhHHHHHHcCCCCCCCcc-cccccccHHH
Q psy14319          2 KFYKYVLGDGDKVKALDRLVTKKAGFNSSHIITGQTYSRKVDVIVTGVLSSLGASIHKKAGFNSSHIIT-GQTYSRKVDV   80 (486)
Q Consensus         2 ~~~~~~~~d~~r~~~~~~~~~~~~g~~~~~a~~g~~~~r~~d~~~~Gt~a~~~~~~a~~LGf~~~~~~~-~av~~RD~~~   80 (486)
                      +|+++|.||.+|++++.++++. .++|| +|++|+.++  +|+          ++++++|||..+..++ +++++||+++
T Consensus       174 ~~~~~l~r~~~rL~~~~~~~~~-~~lGg-aA~aGt~~~--~~~----------~~~a~~LG~~~~~~n~~~~~~~rD~~~  239 (462)
T 2e9f_A          174 AYYEMLKRDAGRLEDAKERLNE-SPLGA-AALAGTGFP--IDR----------HFTARELGFKAPMRNSLDAVASRDFAL  239 (462)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHCE-ECTTC-CSSSCCSSC--CCH----------HHHHHHTTCSEECSCHHHHHHCCHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHhcc-cCccc-cccccCCCC--CCH----------HHHHHHhCCCCCCCCcHHHHHccHHHH
Confidence            7999999999999999999985 34434 588999985  774          6899999999776555 9999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHh--cc--ccccccccCCCCCccCCCCCCchHHHHHHHHHHHHHHHHHHHHH--hhc
Q psy14319         81 IVTGVLSSLGASIHKLATDLRLLAH--MK--EIEEPFESTQIGSSAMAYKRNPMRSERLCSLARFLMSLHQNSLA--TAS  154 (486)
Q Consensus        81 e~~~~la~la~~LsRlA~DL~l~ss--~~--el~e~~~~~~~GSSiMPqKrNP~~~E~ir~~a~~v~g~~~~~l~--~~~  154 (486)
                      |++++++.++++|+|||+||++|++  |+  +++++++   +|||||||||||+.+|+++++|+++.|+..+++.  .++
T Consensus       240 e~~~~l~~~a~~L~kia~Dl~ll~s~e~g~iel~e~~~---~GSSiMP~K~NP~~~E~i~~~a~~v~g~~~~~~~~~~~~  316 (462)
T 2e9f_A          240 EVLSALNIGMLHLSRMAEELILYSTEEFGFVEVPDAFA---TGSSIMPQKKNPDILELIRAKAGRVLGAFVGLSAVVKGL  316 (462)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHTSTTTCCEECCGGGC---EECSSSSSCEECHHHHHHHHTHHHHHHHHHHHHHHHTTC
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhCCCCCcEEecCCCC---CCCCCCCCCcCCHHHHHHHHHHHHHHHHHHHHHHHHhCC
Confidence            9999999999999999999999996  88  6666653   6999999999999999999999999999987553  468


Q ss_pred             cccccCCCchhhHhhhchHHHHHHHHHHHHHHHHhhhccccCHHh
Q psy14319        155 TQWMERTLDDSANRRLTLSESFLTTDCLLITLQNVLEGLVVYPKE  199 (486)
Q Consensus       155 ~~~~erDl~~~~~~~~~l~~a~~~~~~~l~~~~~vl~~l~vn~er  199 (486)
                      |.+||||++++   |..+++++.++..++..+..++++|+||+++
T Consensus       317 p~~~~rDl~~~---~~~l~~s~~~~~~~l~~~~~~l~gl~vn~e~  358 (462)
T 2e9f_A          317 PLAYNKDLQED---KEPLLDALATYRDSLRLLAALLPGLKWRRER  358 (462)
T ss_dssp             CSSBCGGGGGG---HHHHHHHHHHHHHHHHHHHHHGGGCEECHHH
T ss_pred             chHhhhchhhh---HhHHHHHHHHHHHHHHHHHHHhCcCEECHHH
Confidence            89999999885   3455555544444433333333333333333

>3c8t_A Fumarate lyase; structural genomics, PSI-2, protein structure initiat YORK SGX research center for structural genomics, nysgxrc; 2.20A {Mesorhizobium SP}

Probab=100.00  E-value=9.2e-36  Score=315.75  Aligned_cols=206  Identities=19%  Similarity=0.267  Sum_probs=165.5

Q ss_pred             cCCCCCCcccccccccCCCCCCCcHHHHHHHHHHHcCCCCCccccccccCccHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q psy14319        205 IIPDNRLSSHHTTKRSGRPGDGDKVKALDRLVTKKAGFTSSHIITGQTYSRKVDVIVTGVLSSLGASIHKLATDLRLLAH  284 (486)
Q Consensus       205 ~~~~~~g~~~~~~~~~~~~~~g~~~~~i~~~lA~~LGf~~a~~~~~~~~~rd~~~e~~~~l~~~~~~l~rla~Dl~l~ss  284 (486)
                      .++|+.||...         .++.++.+++++++.|||+.+.  ..++.+||+++|++++++.++++|+|||+||++|++
T Consensus       189 ~lGgAvGT~~~---------~~~~~~~~~~~~a~~LGl~~~~--~~~~~~rD~~~e~~~~l~~la~~L~kia~Dl~ll~~  257 (451)
T 3c8t_A          189 EFSGASGTLAS---------LGTRGLDVQRELARELNLGVPS--ITWHSARDAVAETVQFLALVSGSLGKLAMDISIMMT  257 (451)
T ss_dssp             CCCCTTSSCGG---------GTTCHHHHHHHHHHHHTCBCCS--SCCSSCCHHHHHHHHHHHHHHHHHHHHHHHHHHHTS
T ss_pred             CCchhhhcCcc---------cccccHHHHHHHHHHhCCCCCC--CCCccCcHHHHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence            36667777642         1224588999999999998752  234569999999999999999999999999999999


Q ss_pred             --hhhccccccCCCCcCcCCCCCCCchHHHHHHHHHHHHHHHhHHHHHHhhhhHhhhcccccCCCCCCccccchhhhhhc
Q psy14319        285 --MKEIEEPFESTQIGSSAMAYKRNPMRSERLCSLARFLMSLHQNSLATASTQWMERTLDDSANRFPTKSVFSCVTQVKQ  362 (486)
Q Consensus       285 --~~el~~~~~~~~~GSSiMPqKrNP~~~E~~~~~a~~~~g~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~  362 (486)
                        ||||.+|+.++++|||||||||||+.+|.++++|++++|++++++.. ...|+|||+.+|.                 
T Consensus       258 ~e~gEl~~p~~~~q~GSSiMP~K~NP~~~E~i~~~a~~v~g~~~~~~~~-~~~~~erd~~~~~-----------------  319 (451)
T 3c8t_A          258 TELGEVAEPFVRHRGASSTMPQKQNPVSCELILAGARIVRNHATSMLDA-MIHDFERATGPWH-----------------  319 (451)
T ss_dssp             TTTCCEECC---------------CCHHHHHHHHHHHHHHHHHHHHHHH-TCCCTTCCHHHHH-----------------
T ss_pred             ccccccccccccCCCCCCCCCCCcCCHHHHHHHHHHHHHHHHHHHHHhc-CchhhcccccchH-----------------
Confidence              99999999888999999999999999999999999999999998764 5677777764321                 


Q ss_pred             cCCcchhhhhhccCCCCccccccCCCCCCCccccCCchhHhhhhhhcccchHHHHHHHHHHHHHHHhchhCCeeCHHHHH
Q psy14319        363 HGKENDLVDRIRADPYFAPILNQMPTLLDPKSFYGRAPEQQRLSAKGIHTLSESFLTTDCLLITLQNVLEGLVVYPKVIQ  442 (486)
Q Consensus       363 ~g~~~d~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~q~~~~~~~~~~l~~~~~~~~~~l~~~~~~l~~l~v~~~~m~  442 (486)
                                                                   -+|..+++++.++..++..+..|+++|+||++||+
T Consensus       320 ---------------------------------------------~~~~~l~~~~~~~~~~l~~~~~~l~gl~vn~erm~  354 (451)
T 3c8t_A          320 ---------------------------------------------LEWSAVPEGFAVASGILYQAEFMLGGLQVFPDRMR  354 (451)
T ss_dssp             ---------------------------------------------HHHHHHHHHHHHHHHHHHHHHHHHHSCEECHHHHH
T ss_pred             ---------------------------------------------HHHHHHHHHHHHHHHHHHHHHHHhCcCEECHHHHH
Confidence                                                         13457899999999999999999999999999999


Q ss_pred             HHHhccCChhHHHHHHHHHHHcCCChHHHHHHHHHHHHHhhhc
Q psy14319        443 RHIDQELPFMATENIIMAMVKAGGDRQVCHEKIRVLSHQAGAQ  485 (486)
Q Consensus       443 ~~l~~~~~~~~a~~~~~~L~~~g~~fr~Ah~~v~~~~~~a~~~  485 (486)
                      ++++.+.++++||+++++|+++ +|||+||++|+++++.|.++
T Consensus       355 ~~l~~s~~~~~ae~l~~~L~~~-ig~~~A~~iv~~~~~~a~~~  396 (451)
T 3c8t_A          355 ENLDHSRGLIVAEAVMMALAPH-TGRKEAHDIVYLGCRRAVED  396 (451)
T ss_dssp             HHHTTTTTGGGHHHHHHHHHHH-HCHHHHHHHHHHHHHHHHHT
T ss_pred             HHHHhccChHHHHHHHHHHHHh-CCHHHHHHHHHHHHHHHHHh
Confidence            9999999999999999999999 99999999999999998653

>1q5n_A 3-carboxy-CIS,CIS-muconate cycloisomerase; CMLE, aromatic degradation; 2.30A {Acinetobacter calcoaceticus} SCOP: a.127.1.1

Probab=100.00  E-value=1e-35  Score=315.74  Aligned_cols=204  Identities=22%  Similarity=0.217  Sum_probs=166.5

Q ss_pred             CCCCCCcccccccccCCCCCCCcHHHHHHHHHHHcCCCCCccccccccCccHHHHHHHHHHHHHHHHHHHHHHHHHHhh-
Q psy14319        206 IPDNRLSSHHTTKRSGRPGDGDKVKALDRLVTKKAGFTSSHIITGQTYSRKVDVIVTGVLSSLGASIHKLATDLRLLAH-  284 (486)
Q Consensus       206 ~~~~~g~~~~~~~~~~~~~~g~~~~~i~~~lA~~LGf~~a~~~~~~~~~rd~~~e~~~~l~~~~~~l~rla~Dl~l~ss-  284 (486)
                      ++|..||..+         .++..+.+++++++.|||..+.  ..++.+||+++|++++++.++++|+|||+||++|++ 
T Consensus       196 lGgAvGT~~~---------~~~~~~~~~~~~a~~LG~~~~~--~~~~~~rD~~~e~~~~l~~la~~L~kia~Dl~ll~~~  264 (454)
T 1q5n_A          196 LGGAVGSLAS---------LQDQGSIVVEAYAKQLKLGQTA--CTWHGERDRIVEIASVLGIITGNVGKMARDWSLMMQT  264 (454)
T ss_dssp             CCCTTSSCGG---------GTTCHHHHHHHHHHHHTCBCCS--SCCSSCCHHHHHHHHHHHHHHHHHHHHHHHHHHHTST
T ss_pred             CchHhhcCcc---------cccccHHHHHHHHHHhCcCCCC--CCCccCcHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence            5666777532         1223489999999999998752  234569999999999999999999999999999999 


Q ss_pred             -hhhccccccCCCCcCcCCCCCCCchHHHHHHHHHHHHHHHhHHHHHHhhhhHhhhcccccCCCCCCccccchhhhhhcc
Q psy14319        285 -MKEIEEPFESTQIGSSAMAYKRNPMRSERLCSLARFLMSLHQNSLATASTQWMERTLDDSANRFPTKSVFSCVTQVKQH  363 (486)
Q Consensus       285 -~~el~~~~~~~~~GSSiMPqKrNP~~~E~~~~~a~~~~g~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~  363 (486)
                       ||||.+|+.++++|||||||||||+.+|.++++|++++|++++++.. ...|+|||+.+|.                  
T Consensus       265 e~gEl~~p~~~~q~GSSiMP~K~NP~~~E~i~~~a~~v~g~~~~~~~~-~~~~~erd~~~~~------------------  325 (454)
T 1q5n_A          265 EIAEVFEPTAKGRGGSSTMPHKRNPVAAASVLAAANRVPALMSSIYQS-MVQEHERSLGAWH------------------  325 (454)
T ss_dssp             TTCCEECCC-------------CCCHHHHHHHHHHHHHHHHHHHHHHT-TCCCTTSCSSHHH------------------
T ss_pred             ccchhccccccCCCCCccCCCCCCCHHHHHHHHHHHHHHHHHHHHHHh-ccchhcccccchH------------------
Confidence             99999999888999999999999999999999999999999998754 5678888775321                  


Q ss_pred             CCcchhhhhhccCCCCccccccCCCCCCCccccCCchhHhhhhhhcccchHHHHHHHHHHHHHHHhchhCCeeCHHHHHH
Q psy14319        364 GKENDLVDRIRADPYFAPILNQMPTLLDPKSFYGRAPEQQRLSAKGIHTLSESFLTTDCLLITLQNVLEGLVVYPKVIQR  443 (486)
Q Consensus       364 g~~~d~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~q~~~~~~~~~~l~~~~~~~~~~l~~~~~~l~~l~v~~~~m~~  443 (486)
                                                                  .+|..+++++.++..++..+..|+++|+||++||++
T Consensus       326 --------------------------------------------~~~~~l~~~~~~~~~~l~~~~~~l~gl~vn~erm~~  361 (454)
T 1q5n_A          326 --------------------------------------------AEWLSLPEIFQLTAGALERTLDVLKGMEVNAENMHQ  361 (454)
T ss_dssp             --------------------------------------------HHHHHHHHHHHHHHHHHHHHHHHHHHCEECHHHHHH
T ss_pred             --------------------------------------------HHHHHHHHHHHHHHHHHHHHHHHHCcCEECHHHHHH
Confidence                                                        134578999999999999999999999999999999


Q ss_pred             HHhccCChhHHHHHHHHHHHcCCChHHHHHHHHHHHHHhhh
Q psy14319        444 HIDQELPFMATENIIMAMVKAGGDRQVCHEKIRVLSHQAGA  484 (486)
Q Consensus       444 ~l~~~~~~~~a~~~~~~L~~~g~~fr~Ah~~v~~~~~~a~~  484 (486)
                      +++.+.++++||+++++|+++ +|||+||++|+++++.|.+
T Consensus       362 ~l~~s~~~~~ae~l~~~L~~~-ig~~~A~~iv~~~~~~a~~  401 (454)
T 1q5n_A          362 NIECTHGLIMAEAVMMALAPH-MGRLNAHHVVEAACKTAVA  401 (454)
T ss_dssp             HHHTTTTGGGHHHHHHHHHHH-HCHHHHHHHHHHHHHHHHH
T ss_pred             HHHhCcChhHHHHHHHHHHHh-cCHHHHHHHHHHHHHHHHH
Confidence            999999999999999999999 9999999999999999865

>1k7w_A Delta 2 crystallin; eye lens protein, argininosuccinate lyase, enzyme mechanism; HET: AS1; 1.96A {Anas platyrhynchos} SCOP: a.127.1.1 PDB: 1hy1_A 1tju_A 1auw_A 1tjv_A 1tjw_A* 1u16_A* 1u15_A* 1dcn_A* 1xwo_A 1hy0_A 1i0a_A 1aos_A 1k62_A

Probab=100.00  E-value=1.1e-35  Score=316.24  Aligned_cols=181  Identities=16%  Similarity=0.201  Sum_probs=145.7

Q ss_pred             hhhhhHhccHHHHHHHHHHHhhhcCCCceeecccCcccccchhhhhhhhhhhhHHHHHHcCCCCCCCcc-cccccccHHH
Q psy14319          2 KFYKYVLGDGDKVKALDRLVTKKAGFNSSHIITGQTYSRKVDVIVTGVLSSLGASIHKKAGFNSSHIIT-GQTYSRKVDV   80 (486)
Q Consensus         2 ~~~~~~~~d~~r~~~~~~~~~~~~g~~~~~a~~g~~~~r~~d~~~~Gt~a~~~~~~a~~LGf~~~~~~~-~av~~RD~~~   80 (486)
                      +|+++|.||.+|+.++.++++.. ++|| +|++|+.++  +|+          ++++++|||..+..++ +++++||+++
T Consensus       177 ~~~~~l~r~~~rL~~~~~~~~~~-~lGg-aA~aGt~~~--~~~----------~~la~~LG~~~~~~n~~~~~~~rD~~~  242 (468)
T 1k7w_A          177 SHAVALTRDSERLGEVKKRINVL-PLGS-GALAGNPLD--IDR----------EMLRSELEFASISLNSMDAISERDFVV  242 (468)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHSEE-CTTC-TTTTCCTTC--CCH----------HHHHHHHTCSEECSCHHHHHHCCHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHhhc-Cccc-ccccCCCCC--CCh----------HHHHHHcCCCCCCCChHHHHHccHHHH
Confidence            79999999999999999999853 4434 588999985  774          6899999999776555 9999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHh--cc--ccccccccCCCCCccCCCCCCchHHHHHHHHHHHHHHHHHHHHH--hhc
Q psy14319         81 IVTGVLSSLGASIHKLATDLRLLAH--MK--EIEEPFESTQIGSSAMAYKRNPMRSERLCSLARFLMSLHQNSLA--TAS  154 (486)
Q Consensus        81 e~~~~la~la~~LsRlA~DL~l~ss--~~--el~e~~~~~~~GSSiMPqKrNP~~~E~ir~~a~~v~g~~~~~l~--~~~  154 (486)
                      |++++++.++++|+|||+||++|++  |+  +++++++   +|||||||||||+.+|+++++|+++.|+..+++.  .++
T Consensus       243 e~~~~l~~la~~L~kia~Dl~ll~s~e~g~iel~e~~~---~GSSiMP~K~NP~~~E~i~~~a~~v~g~~~~~~~~~~~~  319 (468)
T 1k7w_A          243 EFLSFATLLMIHLSKMAEDLIIYSTSEFGFLTLSDAFS---TGASLMPQKKNPDSLELIRSKAGRVFGRLASILMVLKGL  319 (468)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHTSTTTCCEECCGGGC---EEETTEEEEEECHHHHHHHHHHHHHHHHHHHHHHHHTTC
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhCCCCCceeccCCCC---CCCCCCCCCCCcHHHHHHHHHHHHHHHHHHHHHHHHhCC
Confidence            9999999999999999999999996  88  6666653   6999999999999999999999999999987553  468


Q ss_pred             cccccCCCchhhHhhhchHHHHHHHHHHHHHHHHhhhccccCHHhhhh
Q psy14319        155 TQWMERTLDDSANRRLTLSESFLTTDCLLITLQNVLEGLVVYPKETYS  202 (486)
Q Consensus       155 ~~~~erDl~~~~~~~~~l~~a~~~~~~~l~~~~~vl~~l~vn~erm~~  202 (486)
                      |.+||||++++   |..+++++.++..++..+..++++|+||+++|++
T Consensus       320 p~~~~rDl~~~---~~~l~~s~~~~~~~l~~~~~~l~gl~vn~e~m~~  364 (468)
T 1k7w_A          320 PSTYNKDLQED---KEAVFDVVDTLTAVLQVATGVISTLQISKENMEK  364 (468)
T ss_dssp             CSSCCGGGGGH---HHHHHHHHHHHHHHHHHHHHHHHHCEECHHHHHH
T ss_pred             chHhhhhhhhh---HhHHHHHHHHHHHHHHHHHHHhCCCEECHHHHHH
Confidence            89999999885   3556666555555444444444444444444443

>2pfm_A Adenylosuccinate lyase; PURB, purine biosynthesis, B anthracis; 2.00A {Bacillus anthracis} PDB: 1f1o_A 2x75_A*

Probab=100.00  E-value=2.9e-35  Score=311.21  Aligned_cols=214  Identities=22%  Similarity=0.298  Sum_probs=181.9

Q ss_pred             hhhhhHhccHHHHHHHHHHHhhhcCCCceeecccCcccccchhhhhhhhhhhhHHHHHHcCCCCCCCcccccccccHHHH
Q psy14319          2 KFYKYVLGDGDKVKALDRLVTKKAGFNSSHIITGQTYSRKVDVIVTGVLSSLGASIHKKAGFNSSHIITGQTYSRKVDVI   81 (486)
Q Consensus         2 ~~~~~~~~d~~r~~~~~~~~~~~~g~~~~~a~~g~~~~r~~d~~~~Gt~a~~~~~~a~~LGf~~~~~~~~av~~RD~~~e   81 (486)
                      +|+++|.||.+|++++.++++. .++|| ++.+|.++++.           ..++++++|||..+..+ |.+.+||+++|
T Consensus       167 ~~~~~l~r~~~rL~~~~~~~~~-~~lGg-AvGt~~~~~~~-----------~~~~~a~~LGl~~~~~~-d~~~~rD~~~e  232 (444)
T 2pfm_A          167 LWYEEMKRNVERFKQAANTVRV-GKLSG-AVGTYANIDPF-----------VEKYVCENLGLEAAPIS-TQTLQRDRHAH  232 (444)
T ss_dssp             HHHHHHHHHHHHHHHHHHHTCE-ECCCC-TTSSCTTSCHH-----------HHHHHHHHTTCEECSSC-SSSCCTHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHhcc-cCCch-hhccCCcCCHH-----------HHHHHHHHhCCCCCCCC-cCccCcHHHHH
Confidence            7999999999999999999975 35545 44455555421           24799999999988766 55669999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHh--ccccccccccCCCCCccCCCCCCchHHHHHHHHHHHHHHHHHHHHHhhcccccc
Q psy14319         82 VTGVLSSLGASIHKLATDLRLLAH--MKEIEEPFESTQIGSSAMAYKRNPMRSERLCSLARFLMSLHQNSLATASTQWME  159 (486)
Q Consensus        82 ~~~~la~la~~LsRlA~DL~l~ss--~~el~e~~~~~~~GSSiMPqKrNP~~~E~ir~~a~~v~g~~~~~l~~~~~~~~e  159 (486)
                      ++++++.++++|+|||+||++|++  |+|+.+|+.++++|||||||||||+.+|+++++|+++.|+..+++ .+++++||
T Consensus       233 ~~~~l~~la~~L~kia~Dl~ll~~~e~gEl~~p~~~~q~GSSiMP~K~NP~~~E~i~~~a~~v~g~~~~~~-~~~~~~~e  311 (444)
T 2pfm_A          233 YMSTLALIATSIEKMAVEIRGLQKSETREVEEAFAKGQKGSSAMPHKRNPIGSENMTGLARVIRGYMMTAY-ENVPLWHE  311 (444)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHTSTTTCSEECCCCTTCCSCSSCTTCCCCHHHHHHHHHHHHHHHHHHHHH-HTSCCCTT
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhcccccccccccccCCCcCccCCcccCCHHHHHHHHHHHHHHHHHHHHH-HhCccccc
Confidence            999999999999999999999996  999999998789999999999999999999999999999998754 45799999


Q ss_pred             CCCchhhHhhhchHHHHHHHHHHHHHHHHhhhccccCHHhhhhhhcCCCCCCcccccccccCCCCCCCcHHHHHHHHHHH
Q psy14319        160 RTLDDSANRRLTLSESFLTTDCLLITLQNVLEGLVVYPKETYSIRIIPDNRLSSHHTTKRSGRPGDGDKVKALDRLVTKK  239 (486)
Q Consensus       160 rDl~~~~~~~~~l~~a~~~~~~~l~~~~~vl~~l~vn~erm~~~~~~~~~~g~~~~~~~~~~~~~~g~~~~~i~~~lA~~  239 (486)
                      ||+++|..+|..+++++.++..++..+..++++|+||++||++..  ....|.              ..++.+...+.+.
T Consensus       312 rd~~~~~~~~~~l~~~~~~~~~~l~~~~~~l~gl~vn~erm~~~l--~~s~~~--------------~~ae~la~~L~~~  375 (444)
T 2pfm_A          312 RDISHSSAERVILPDATIALNYMLNRFGNIVKNLTVYPENMKRNM--TRTYGL--------------IYSQRVMLTLIDK  375 (444)
T ss_dssp             CCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCEECHHHHHHHH--TTTTTG--------------GGHHHHHHHHHHT
T ss_pred             ccccchHHHHHHHHHHHHHHHHHHHHHHHHHccCEECHHHHHHHH--HhCcCc--------------hHHHHHHHHHHhc
Confidence            999999999999999999999999999999999999999999842  111222              2467888888775


Q ss_pred             -cCCCCCc
Q psy14319        240 -AGFTSSH  246 (486)
Q Consensus       240 -LGf~~a~  246 (486)
                       +||+.++
T Consensus       376 gig~~~A~  383 (444)
T 2pfm_A          376 GMVREEAY  383 (444)
T ss_dssp             TCCHHHHH
T ss_pred             CCCHHHHH
Confidence             7777653

>1c3c_A Protein (adenylosuccinate lyase); purine biosynthesis; 1.80A {Thermotoga maritima} SCOP: a.127.1.1 PDB: 1c3u_A

Probab=100.00  E-value=2.1e-35  Score=311.26  Aligned_cols=214  Identities=20%  Similarity=0.251  Sum_probs=177.2

Q ss_pred             hhhhhHhccHHHHHHHHHHHhhhcCCCceeecccCcccccchhhhhhhhhhhhHHHHHHcCCCCCCCcccccccccHHHH
Q psy14319          2 KFYKYVLGDGDKVKALDRLVTKKAGFNSSHIITGQTYSRKVDVIVTGVLSSLGASIHKKAGFNSSHIITGQTYSRKVDVI   81 (486)
Q Consensus         2 ~~~~~~~~d~~r~~~~~~~~~~~~g~~~~~a~~g~~~~r~~d~~~~Gt~a~~~~~~a~~LGf~~~~~~~~av~~RD~~~e   81 (486)
                      +|+++|.||.+|++++.++++. .++|| ++.+|.++++           ...++++++|||..+..+ |.+.+||+++|
T Consensus       155 ~~~~~l~r~~~rL~~~~~~~~~-~~lGg-AvGt~~~~~~-----------~~~~~~a~~LGl~~~~~~-d~~~~rD~~~e  220 (429)
T 1c3c_A          155 GWYSEMKRNVQRLERAIEEVSY-GKISG-AVGNYANVPP-----------EVEEKALSYLGLKPEPVS-TQVVPRDRHAF  220 (429)
T ss_dssp             HHHHHHHHHHHHHHHHHHHTCE-ECCCC-TTSSCSSSCH-----------HHHHHHHHHTTCEECSSC-SSSCCTHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHhcc-CCCch-hhcCCccCCH-----------HHHHHHHHHcCCCCCCCC-cCccCcHHHHH
Confidence            7999999999999999999975 35545 4445555542           124799999999988766 55669999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHh--ccccccccccCCCCCccCCCCCCchHHHHHHHHHHHHHHHHHHHHHhhcccccc
Q psy14319         82 VTGVLSSLGASIHKLATDLRLLAH--MKEIEEPFESTQIGSSAMAYKRNPMRSERLCSLARFLMSLHQNSLATASTQWME  159 (486)
Q Consensus        82 ~~~~la~la~~LsRlA~DL~l~ss--~~el~e~~~~~~~GSSiMPqKrNP~~~E~ir~~a~~v~g~~~~~l~~~~~~~~e  159 (486)
                      ++++++.++++|+|||+||++|++  |+|+.+|+.++++|||||||||||+.+|+++++|+++.|+..+++ .+++++||
T Consensus       221 ~~~~l~~~a~~L~kia~Dl~ll~~~e~~El~~p~~~~q~GSSiMP~K~NP~~~E~i~~~a~~v~g~~~~~~-~~~~~~~e  299 (429)
T 1c3c_A          221 YLSTLAIVAAGIERIAVEIRHLQRTEVLEVEEPFRKGQRGSSAMPHKKNPITCERLTGLSRMMRAYVDPSL-ENIALWHE  299 (429)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHTSTTTCSEECCCCC-----CCCTTCCCCHHHHHHHHHHHHHHHTHHHHH-HTTCCSTT
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhccccchhccccccCCCcCCCCCCCCCcHHHHHHHHHHHHHHHHHHHHH-hcCCcccc
Confidence            999999999999999999999996  999999998789999999999999999999999999999998754 46789999


Q ss_pred             CCCchhhHhhhchHHHHHHHHHHHHHHHHhhhccccCHHhhhhhhcCCCCCCcccccccccCCCCCCCcHHHHHHHHHHH
Q psy14319        160 RTLDDSANRRLTLSESFLTTDCLLITLQNVLEGLVVYPKETYSIRIIPDNRLSSHHTTKRSGRPGDGDKVKALDRLVTKK  239 (486)
Q Consensus       160 rDl~~~~~~~~~l~~a~~~~~~~l~~~~~vl~~l~vn~erm~~~~~~~~~~g~~~~~~~~~~~~~~g~~~~~i~~~lA~~  239 (486)
                      ||+++|..+|..+++++.++..++..+..++++|+||++||++..  ....|.              ..++.+...+.+.
T Consensus       300 rd~~~~~~~~~~l~~~~~~~~~~l~~~~~~l~~l~vn~erm~~~l--~~s~~~--------------~~a~~la~~L~~~  363 (429)
T 1c3c_A          300 RDISHSSVERYVFPDATQTLYYMIVTATNVVRNMKVNEERMKKNI--DLTKGL--------------VFSQRVLLKLIEK  363 (429)
T ss_dssp             CCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCEECHHHHHHHH--TTTTTG--------------GGHHHHHHHHHHT
T ss_pred             ccccccHHHHHHHHHHHHHHHHHHHHHHHHHCcCeeCHHHHHHHH--HhccCh--------------HHHHHHHHHHHhc
Confidence            999999999999999999999999999999999999999999842  111222              2467888888775


Q ss_pred             -cCCCCCc
Q psy14319        240 -AGFTSSH  246 (486)
Q Consensus       240 -LGf~~a~  246 (486)
                       +||+.+|
T Consensus       364 gig~~~A~  371 (429)
T 1c3c_A          364 GLTRKEAY  371 (429)
T ss_dssp             TCCHHHHH
T ss_pred             CCCHHHHH
Confidence             7777653

>1dof_A Adenylosuccinate lyase; purine biosynthesis; 2.10A {Pyrobaculum aerophilum} SCOP: a.127.1.1

Probab=100.00  E-value=1e-35  Score=311.19  Aligned_cols=188  Identities=27%  Similarity=0.381  Sum_probs=159.2

Q ss_pred             HHHHHHHHHHHcCCCCCcccccccc-CccHHHHHHHHHHHHHHHHHHHHHHHHHHhh--hhhccccccCCCCcCcCCCCC
Q psy14319        229 VKALDRLVTKKAGFTSSHIITGQTY-SRKVDVIVTGVLSSLGASIHKLATDLRLLAH--MKEIEEPFESTQIGSSAMAYK  305 (486)
Q Consensus       229 ~~~i~~~lA~~LGf~~a~~~~~~~~-~rd~~~e~~~~l~~~~~~l~rla~Dl~l~ss--~~el~~~~~~~~~GSSiMPqK  305 (486)
                      .+.+++++++.|||..+.  ..++. +||+++|++++++.++++|+|||+||++|++  |||+.+|   . +||||||||
T Consensus       195 ~~~~~~~~a~~lGl~~~~--~~~~~~~rD~~~e~~~~l~~~a~~L~kia~Dl~ll~~~e~~ei~lp---~-~GSSiMP~K  268 (403)
T 1dof_A          195 GLEVRRRVAERLGLPHHV--ITTQVAPRESFAVLASALALMAAVFERLAVEIRELSRPEIGEVVEG---G-GGSSAMPHK  268 (403)
T ss_dssp             HHHHHHHHHHHTTCCBCS--SCSSSCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSTTTCSEESC---C----------
T ss_pred             cHHHHHHHHHHhCcCCCC--CcchhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCccCeEeCC---C-CccCCCCCC
Confidence            488999999999998752  33456 9999999999999999999999999999999  9999987   4 999999999


Q ss_pred             CCchHHHHHHHHHHHHHHHhHHHHHHhhhhHhhhcccccCCCCCCccccchhhhhhccCCcchhhhhhccCCCCcccccc
Q psy14319        306 RNPMRSERLCSLARFLMSLHQNSLATASTQWMERTLDDSANRFPTKSVFSCVTQVKQHGKENDLVDRIRADPYFAPILNQ  385 (486)
Q Consensus       306 rNP~~~E~~~~~a~~~~g~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~g~~~d~~~~~~~~~~~~~~~~~  385 (486)
                      |||+.+|.++++|++++|+..+++.. ...|+|||+.+|.                                        
T Consensus       269 ~NP~~~E~i~~~a~~v~g~~~~~~~~-~~~~~erd~~~~~----------------------------------------  307 (403)
T 1dof_A          269 ANPTASERIVSLARYVRALTHVAFEN-VALWHERDLTNSA----------------------------------------  307 (403)
T ss_dssp             CCCHHHHHHHHHHHHHHHHHHHHHHT-TCCCTTCCGGGHH----------------------------------------
T ss_pred             CCchHHHHHHHHHHHHHHHHHHHHHc-CcccccccccchH----------------------------------------
Confidence            99999999999999999999988764 5577777764321                                        


Q ss_pred             CCCCCCCccccCCchhHhhhhhhcccchHHHHHHHHHHHHHHHhchhCCeeCHHHHHHHHhccCChhHHHHHHHHHHHcC
Q psy14319        386 MPTLLDPKSFYGRAPEQQRLSAKGIHTLSESFLTTDCLLITLQNVLEGLVVYPKVIQRHIDQELPFMATENIIMAMVKAG  465 (486)
Q Consensus       386 ~~~~~~p~~~~~~~~~q~~~~~~~~~~l~~~~~~~~~~l~~~~~~l~~l~v~~~~m~~~l~~~~~~~~a~~~~~~L~~~g  465 (486)
                                            .+|..+++++.++..++..+..++++|+||++||+++++.+.++++||+++++|+++|
T Consensus       308 ----------------------~~~~~l~~~~~~~~~~l~~~~~~l~gl~vn~erm~~~l~~s~~~~~a~~l~~~L~~~g  365 (403)
T 1dof_A          308 ----------------------NERVWIPEALLALDEILTSALRVLKNVYIDEERITENLQKALPYILTEFHMNRMIKEG  365 (403)
T ss_dssp             ----------------------HHHHHHHHHHHHHHHHHHHHHHHHHHCEECHHHHHHHHHHHHHHHCHHHHHHHHHHTT
T ss_pred             ----------------------HHHHHHHHHHHHHHHHHHHHHHHHCcCEECHHHHHHHHHhccCHHHHHHHHHHHhhcC
Confidence                                  1345889999999999999999999999999999999999999999999999999999


Q ss_pred             CChHHHHHHHHHHHHHhhhc
Q psy14319        466 GDRQVCHEKIRVLSHQAGAQ  485 (486)
Q Consensus       466 ~~fr~Ah~~v~~~~~~a~~~  485 (486)
                      +|||+||++|++++++|.++
T Consensus       366 ig~~~A~~iv~~~~~~a~~~  385 (403)
T 1dof_A          366 ASRAEAYKKAKEVKALTFEY  385 (403)
T ss_dssp             CCHHHHHHHHTTCCCCCCGG
T ss_pred             CCHHHHHHHHHHHHHHHHHh
Confidence            99999999999998887553

>1q5n_A 3-carboxy-CIS,CIS-muconate cycloisomerase; CMLE, aromatic degradation; 2.30A {Acinetobacter calcoaceticus} SCOP: a.127.1.1

Probab=100.00  E-value=3.5e-35  Score=311.66  Aligned_cols=216  Identities=21%  Similarity=0.184  Sum_probs=169.0

Q ss_pred             hhhhhHhccHHHHHHHHHHHhhhcCCCceeecccCcccccchhhhhhhhhhhhHHHHHHcCCCCCCCcccccccccHHHH
Q psy14319          2 KFYKYVLGDGDKVKALDRLVTKKAGFNSSHIITGQTYSRKVDVIVTGVLSSLGASIHKKAGFNSSHIITGQTYSRKVDVI   81 (486)
Q Consensus         2 ~~~~~~~~d~~r~~~~~~~~~~~~g~~~~~a~~g~~~~r~~d~~~~Gt~a~~~~~~a~~LGf~~~~~~~~av~~RD~~~e   81 (486)
                      +|+++|.||.+|+.++.++++. .++|| ++.+|.+++. .+       ....++++++|||..+..++.  .+||+++|
T Consensus       172 ~~~~~l~r~~~rL~~~~~~~~~-~~lGg-AvGT~~~~~~-~~-------~~~~~~~a~~LG~~~~~~~~~--~~rD~~~e  239 (454)
T 1q5n_A          172 RWASAFKRDLDRINAIKARVLV-AQLGG-AVGSLASLQD-QG-------SIVVEAYAKQLKLGQTACTWH--GERDRIVE  239 (454)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHSB-CCCCC-TTSSCGGGTT-CH-------HHHHHHHHHHHTCBCCSSCCS--SCCHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHhhcc-cCCch-HhhcCccccc-cc-------HHHHHHHHHHhCcCCCCCCCc--cCcHHHHH
Confidence            7999999999999999999985 35545 4444444421 11       112579999999998876553  39999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHh--ccccccccccCCCCCccCCCCCCchHHHHHHHHHHHHHHHHHHHHHhhcccccc
Q psy14319         82 VTGVLSSLGASIHKLATDLRLLAH--MKEIEEPFESTQIGSSAMAYKRNPMRSERLCSLARFLMSLHQNSLATASTQWME  159 (486)
Q Consensus        82 ~~~~la~la~~LsRlA~DL~l~ss--~~el~e~~~~~~~GSSiMPqKrNP~~~E~ir~~a~~v~g~~~~~l~~~~~~~~e  159 (486)
                      ++++++.++++|+|||+||++|++  |+||.+|+.++++|||||||||||+.+|+++++|+++.|+..+++ .+++++||
T Consensus       240 ~~~~l~~la~~L~kia~Dl~ll~~~e~gEl~~p~~~~q~GSSiMP~K~NP~~~E~i~~~a~~v~g~~~~~~-~~~~~~~e  318 (454)
T 1q5n_A          240 IASVLGIITGNVGKMARDWSLMMQTEIAEVFEPTAKGRGGSSTMPHKRNPVAAASVLAAANRVPALMSSIY-QSMVQEHE  318 (454)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHTSTTTCCEECCC-------------CCCHHHHHHHHHHHHHHHHHHHHH-HTTCCCTT
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhccccchhccccccCCCCCccCCCCCCCHHHHHHHHHHHHHHHHHHHHH-Hhccchhc
Confidence            999999999999999999999996  999999997789999999999999999999999999999998755 56899999


Q ss_pred             CCCchhhHhhhchHHHHHHHHHHHHHHHHhhhccccCHHhhhhhhcCCCCCCcccccccccCCCCCCCcHHHHHHHHHHH
Q psy14319        160 RTLDDSANRRLTLSESFLTTDCLLITLQNVLEGLVVYPKETYSIRIIPDNRLSSHHTTKRSGRPGDGDKVKALDRLVTKK  239 (486)
Q Consensus       160 rDl~~~~~~~~~l~~a~~~~~~~l~~~~~vl~~l~vn~erm~~~~~~~~~~g~~~~~~~~~~~~~~g~~~~~i~~~lA~~  239 (486)
                      ||+++|..+|..+|+++.++..++..+..++++|+||++||++....  ..|.              ..++.+...+...
T Consensus       319 rd~~~~~~~~~~l~~~~~~~~~~l~~~~~~l~gl~vn~erm~~~l~~--s~~~--------------~~ae~l~~~L~~~  382 (454)
T 1q5n_A          319 RSLGAWHAEWLSLPEIFQLTAGALERTLDVLKGMEVNAENMHQNIEC--THGL--------------IMAEAVMMALAPH  382 (454)
T ss_dssp             SCSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCEECHHHHHHHHHT--TTTG--------------GGHHHHHHHHHHH
T ss_pred             ccccchHHHHHHHHHHHHHHHHHHHHHHHHHCcCEECHHHHHHHHHh--CcCh--------------hHHHHHHHHHHHh
Confidence            99999999999999999999999999999999999999999984211  1222              2367888887777


Q ss_pred             cCCCCCc
Q psy14319        240 AGFTSSH  246 (486)
Q Consensus       240 LGf~~a~  246 (486)
                      +||+.++
T Consensus       383 ig~~~A~  389 (454)
T 1q5n_A          383 MGRLNAH  389 (454)
T ss_dssp             HCHHHHH
T ss_pred             cCHHHHH
Confidence            8888764

>4eei_A Adenylosuccinate lyase; structural genomics, niaid, national institute of allergy AN infectious diseases; HET: AMP; 1.92A {Francisella tularensis subsp}

Probab=100.00  E-value=2.6e-35  Score=310.70  Aligned_cols=215  Identities=20%  Similarity=0.204  Sum_probs=169.6

Q ss_pred             hhhhhHhccHHHHHHHHHHHhhhcCCCceeecccCcccccchhhhhhhhhhhhHHHHHHcCCCCCCCcccccccccHHHH
Q psy14319          2 KFYKYVLGDGDKVKALDRLVTKKAGFNSSHIITGQTYSRKVDVIVTGVLSSLGASIHKKAGFNSSHIITGQTYSRKVDVI   81 (486)
Q Consensus         2 ~~~~~~~~d~~r~~~~~~~~~~~~g~~~~~a~~g~~~~r~~d~~~~Gt~a~~~~~~a~~LGf~~~~~~~~av~~RD~~~e   81 (486)
                      +|++.|.||.+|++++.++++. .+++|  | .|+.++  +|+       .+.+++++.|||..++ +.+++++||+++|
T Consensus       156 ~~~~~l~r~~~rL~~~~~~~~~-~~lgG--A-vGT~~~--~~~-------~~~~~~a~~LG~~~~~-~~~~v~~rD~~~e  221 (438)
T 4eei_A          156 GAYVEFKRRLKDLKDFQKDGLT-VQFSG--A-VGNYCI--LTT-------EDEKKAADILGLPVEE-VSTQVIPRDRIAK  221 (438)
T ss_dssp             HHHHHHHHHHHHHHHHHHTTCC-BCCCC--T-TSCCSS--SCH-------HHHHHHHHHHTCCBCS-SCSSSCCTHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHhH-hcCcc--H-hhCccc--ccH-------HHHHHHHHHcCCCCCC-ccccccccHHHHH
Confidence            6999999999999999999874 35534  4 477764  553       2357999999998554 3478999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHh--ccccccccccCCCCCccCCCCCCchHHHHHHHHHHHHHHHHHHHHHhhcccccc
Q psy14319         82 VTGVLSSLGASIHKLATDLRLLAH--MKEIEEPFESTQIGSSAMAYKRNPMRSERLCSLARFLMSLHQNSLATASTQWME  159 (486)
Q Consensus        82 ~~~~la~la~~LsRlA~DL~l~ss--~~el~e~~~~~~~GSSiMPqKrNP~~~E~ir~~a~~v~g~~~~~l~~~~~~~~e  159 (486)
                      ++++++.++++|+|||+||++|++  |+|+.+||+++++|||||||||||+.+|+++++|+++.|+... .+.+++.|||
T Consensus       222 ~~~~l~~~a~~L~kia~Di~ll~~~e~gel~~~f~~~q~GSSiMP~K~NP~~~E~i~~~a~~v~g~~~~-~~~~~~~~~e  300 (438)
T 4eei_A          222 LISIHGLIASAIERLAVEIRHLHRSDVFEVYEGFSKGQKGSSTMPHKKNPISTENLTGMARMLRSHVSI-ALENCVLWHE  300 (438)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHSTTTCSEECCC------------CCCCHHHHHHHHHHHHHHHHHHH-HHHTTCCCTT
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhccccceeccccccCCCCCCCCCCCCCcHHHHHHHHHHHHHHHHHHH-HHhccchhcC
Confidence            999999999999999999999994  9999999988999999999999999999999999999999864 5668899999


Q ss_pred             CCCchhhHhhhchHHHHHHHHHHHHHHHHhhhccccCHHhhhhhhcCCCCCCcccccccccCCCCCCCcHHHHHHHHHH-
Q psy14319        160 RTLDDSANRRLTLSESFLTTDCLLITLQNVLEGLVVYPKETYSIRIIPDNRLSSHHTTKRSGRPGDGDKVKALDRLVTK-  238 (486)
Q Consensus       160 rDl~~~~~~~~~l~~a~~~~~~~l~~~~~vl~~l~vn~erm~~~~~~~~~~g~~~~~~~~~~~~~~g~~~~~i~~~lA~-  238 (486)
                      ||+++|..+|..+++++.++..++.++..++++|+||+++|++.....  .|+              ..++.+...+.+ 
T Consensus       301 rdl~~~~~er~~l~~~~~~~~~~l~~~~~~l~~l~vn~erm~~~l~~~--~~~--------------~~a~~~a~~Lv~~  364 (438)
T 4eei_A          301 RDISHSSAERFYLPDNFGIMVYALRRMKNTIDNLVVQRDIIEDRVRST--SAY--------------LSSFYLHFLVANT  364 (438)
T ss_dssp             CCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCEECHHHHHHHHHHC--CTT--------------HHHHHHHHHHHHS
T ss_pred             ccchhhHHHHHHHHHHHHHHHHHHHHHHHHHccCEECHHHHHHHHHhc--cCH--------------HHHHHHHHHHHHc
Confidence            999999999999999999999999999999999999999999842111  122              135677777654 


Q ss_pred             HcCCCCCcc
Q psy14319        239 KAGFTSSHI  247 (486)
Q Consensus       239 ~LGf~~a~~  247 (486)
                      .+||+.+|.
T Consensus       365 g~~~~~Ah~  373 (438)
T 4eei_A          365 PFMREDCYK  373 (438)
T ss_dssp             SCCHHHHHH
T ss_pred             CCCHHHHHH
Confidence            467766543

>1re5_A 3-carboxy-CIS,CIS-muconate cycloisomerase; homotetramer, fumarase class II cycloisomerase, molecular EV isomerase; HET: CIT; 2.60A {Pseudomonas putida} SCOP: a.127.1.1

Probab=100.00  E-value=6.1e-35  Score=309.44  Aligned_cols=216  Identities=19%  Similarity=0.159  Sum_probs=173.9

Q ss_pred             hhhhhHhccHHHHHHHHHHHhhhcCCCceeecccCcccccchhhhhhhhhhhhHHHHHHcCCCCCCCcccccccccHHHH
Q psy14319          2 KFYKYVLGDGDKVKALDRLVTKKAGFNSSHIITGQTYSRKVDVIVTGVLSSLGASIHKKAGFNSSHIITGQTYSRKVDVI   81 (486)
Q Consensus         2 ~~~~~~~~d~~r~~~~~~~~~~~~g~~~~~a~~g~~~~r~~d~~~~Gt~a~~~~~~a~~LGf~~~~~~~~av~~RD~~~e   81 (486)
                      +|+++|.||.+|++++.++++. .++||  | .|+..+  +|+   + ...+.++++++|||..+..+  ++++||+++|
T Consensus       168 ~~~~~l~r~~~rL~~~~~~~~~-~~lGG--A-vGt~~~--~~~---~-~~~~~~~la~~LG~~~~~~~--~~~~rD~~~e  235 (450)
T 1re5_A          168 GVLGALTRHRQRLQELRPRLLV-LQFGG--A-SGSLAA--LGS---K-AMPVAEALAEQLKLTLPEQP--WHTQRDRLVE  235 (450)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHSB-CCCCC--T-TSSCGG--GGG---G-HHHHHHHHHHHHTCBCCSSC--CTTCCHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHhhhh-cCCcc--h-hcCCcc--cCc---c-hHHHHHHHHHHhCcCCCCcc--cccccHHHHH
Confidence            7999999999999999999985 35544  3 555553  442   1 12245799999999988754  4779999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHh--ccccccccccCCCCCccCCCCCCchHHHHHHHHHHHHHHHHHHHHHhhcccccc
Q psy14319         82 VTGVLSSLGASIHKLATDLRLLAH--MKEIEEPFESTQIGSSAMAYKRNPMRSERLCSLARFLMSLHQNSLATASTQWME  159 (486)
Q Consensus        82 ~~~~la~la~~LsRlA~DL~l~ss--~~el~e~~~~~~~GSSiMPqKrNP~~~E~ir~~a~~v~g~~~~~l~~~~~~~~e  159 (486)
                      ++++++.++++|+|||+||++|++  |+||.+|+.++++|||||||||||+.+|+++++|+++.|+..+++ .+++.+||
T Consensus       236 ~~~~l~~la~~L~kia~Dl~ll~~~e~~El~~p~~~~q~GSSiMP~K~NP~~~E~i~~~a~~v~g~~~~~~-~~~~~~~e  314 (450)
T 1re5_A          236 FASVLGLVAGSLGKFGRDISLLMQTEAGEVFEPSAPGKGGSSTMPHKRNPVGAAVLIGAATRVPGLLSTLF-AAMPQEHE  314 (450)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHTSTTTCCEECCCCC----------CCCCHHHHHHHHHHHHHHHHHHHHH-HTCCCCTT
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhccCcceeecccccCCCccccCCCCcCCHHHHHHHHHHHHHHHHHHHHH-HhChhhcc
Confidence            999999999999999999999996  999999997789999999999999999999999999999998755 56789999


Q ss_pred             CCCchhhHhhhchHHHHHHHHHHHHHHHHhhhccccCHHhhhhhhcCCCCCCcccccccccCCCCCCCcHHHHHHHHHHH
Q psy14319        160 RTLDDSANRRLTLSESFLTTDCLLITLQNVLEGLVVYPKETYSIRIIPDNRLSSHHTTKRSGRPGDGDKVKALDRLVTKK  239 (486)
Q Consensus       160 rDl~~~~~~~~~l~~a~~~~~~~l~~~~~vl~~l~vn~erm~~~~~~~~~~g~~~~~~~~~~~~~~g~~~~~i~~~lA~~  239 (486)
                      ||+++|..+|..+++++.++..++.++..++++|+||++||++..  ....|..              .++.+...+.+.
T Consensus       315 rd~~~~~~~~~~l~~~~~~~~~~l~~~~~~l~~l~vn~erm~~~l--~~s~~~~--------------~Ae~l~~~L~~g  378 (450)
T 1re5_A          315 RSLGLWHAEWETLPDICCLVSGALRQAQVIAEGMEVDAARMRRNL--DLTQGLV--------------LAEAVSIVLAQR  378 (450)
T ss_dssp             BCSSTTTTHHHHHHHHHHHHHHHHHHHHHHHHHCEECHHHHHHHH--TTSTTGG--------------GHHHHHHHHHHH
T ss_pred             ccccchHHHHHHHHHHHHHHHHHHHHHHHHhCcCEECHHHHHHHH--HhCcChh--------------HHHHHHHHHhcC
Confidence            999999999999999999999999999999999999999999842  1112222              367888888888


Q ss_pred             cCCCCCc
Q psy14319        240 AGFTSSH  246 (486)
Q Consensus       240 LGf~~a~  246 (486)
                      +||+.+|
T Consensus       379 ig~~~A~  385 (450)
T 1re5_A          379 LGRDRAH  385 (450)
T ss_dssp             SCHHHHH
T ss_pred             CCHHHHH
Confidence            8888764

>3c8t_A Fumarate lyase; structural genomics, PSI-2, protein structure initiat YORK SGX research center for structural genomics, nysgxrc; 2.20A {Mesorhizobium SP}

Probab=100.00  E-value=5.6e-35  Score=309.72  Aligned_cols=216  Identities=19%  Similarity=0.201  Sum_probs=166.7

Q ss_pred             hhhhhHhccHHHHHHHHHHHhhhcCCCceeecccCcccccchhhhhhhhhhhhHHHHHHcCCCCCCCcccccccccHHHH
Q psy14319          2 KFYKYVLGDGDKVKALDRLVTKKAGFNSSHIITGQTYSRKVDVIVTGVLSSLGASIHKKAGFNSSHIITGQTYSRKVDVI   81 (486)
Q Consensus         2 ~~~~~~~~d~~r~~~~~~~~~~~~g~~~~~a~~g~~~~r~~d~~~~Gt~a~~~~~~a~~LGf~~~~~~~~av~~RD~~~e   81 (486)
                      +|+++|.||.+|++++.++++. .++|| ++.+|.+++. .+       ....++++++|||..+..++.  .+||+++|
T Consensus       166 ~~~~~l~r~~~rL~~~~~~~~~-~~lGg-AvGT~~~~~~-~~-------~~~~~~~a~~LGl~~~~~~~~--~~rD~~~e  233 (451)
T 3c8t_A          166 VWLSAFDRHAARLEEISPRVLV-VEFSG-ASGTLASLGT-RG-------LDVQRELARELNLGVPSITWH--SARDAVAE  233 (451)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHCB-CCCCC-TTSSCGGGTT-CH-------HHHHHHHHHHHTCBCCSSCCS--SCCHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHhhcc-cCCch-hhhcCccccc-cc-------HHHHHHHHHHhCCCCCCCCCc--cCcHHHHH
Confidence            7999999999999999999985 35545 3334444421 11       123579999999998876553  39999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHh--ccccccccccCCCCCccCCCCCCchHHHHHHHHHHHHHHHHHHHHHhhcccccc
Q psy14319         82 VTGVLSSLGASIHKLATDLRLLAH--MKEIEEPFESTQIGSSAMAYKRNPMRSERLCSLARFLMSLHQNSLATASTQWME  159 (486)
Q Consensus        82 ~~~~la~la~~LsRlA~DL~l~ss--~~el~e~~~~~~~GSSiMPqKrNP~~~E~ir~~a~~v~g~~~~~l~~~~~~~~e  159 (486)
                      ++++++.++++|+|||+||++|++  |+||.+|+.++++|||||||||||+.+|+++++|+++.|+..+++ .+++++||
T Consensus       234 ~~~~l~~la~~L~kia~Dl~ll~~~e~gEl~~p~~~~q~GSSiMP~K~NP~~~E~i~~~a~~v~g~~~~~~-~~~~~~~e  312 (451)
T 3c8t_A          234 TVQFLALVSGSLGKLAMDISIMMTTELGEVAEPFVRHRGASSTMPQKQNPVSCELILAGARIVRNHATSML-DAMIHDFE  312 (451)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHTSTTTCCEECC---------------CCHHHHHHHHHHHHHHHHHHHHH-HHTCCCTT
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhCccccccccccccCCCCCCCCCCCcCCHHHHHHHHHHHHHHHHHHHHH-hcCchhhc
Confidence            999999999999999999999996  999999997789999999999999999999999999999998755 56889999


Q ss_pred             CCCchhhHhhhchHHHHHHHHHHHHHHHHhhhccccCHHhhhhhhcCCCCCCcccccccccCCCCCCCcHHHHHHHHHHH
Q psy14319        160 RTLDDSANRRLTLSESFLTTDCLLITLQNVLEGLVVYPKETYSIRIIPDNRLSSHHTTKRSGRPGDGDKVKALDRLVTKK  239 (486)
Q Consensus       160 rDl~~~~~~~~~l~~a~~~~~~~l~~~~~vl~~l~vn~erm~~~~~~~~~~g~~~~~~~~~~~~~~g~~~~~i~~~lA~~  239 (486)
                      ||+++|..+|..+++++.++..++..+..++++|+||++||++..  ....|.              ..++.+...+...
T Consensus       313 rd~~~~~~~~~~l~~~~~~~~~~l~~~~~~l~gl~vn~erm~~~l--~~s~~~--------------~~ae~l~~~L~~~  376 (451)
T 3c8t_A          313 RATGPWHLEWSAVPEGFAVASGILYQAEFMLGGLQVFPDRMRENL--DHSRGL--------------IVAEAVMMALAPH  376 (451)
T ss_dssp             CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCEECHHHHHHHH--TTTTTG--------------GGHHHHHHHHHHH
T ss_pred             ccccchHHHHHHHHHHHHHHHHHHHHHHHHhCcCEECHHHHHHHH--HhccCh--------------HHHHHHHHHHHHh
Confidence            999999999999999999999999999999999999999999842  111222              2367888887777


Q ss_pred             cCCCCCc
Q psy14319        240 AGFTSSH  246 (486)
Q Consensus       240 LGf~~a~  246 (486)
                      +||+.++
T Consensus       377 ig~~~A~  383 (451)
T 3c8t_A          377 TGRKEAH  383 (451)
T ss_dssp             HCHHHHH
T ss_pred             CCHHHHH
Confidence            8888764

>1yis_A Adenylosuccinate lyase; structural genomics, PSI, P structure initiative, southeast collaboratory for structura genomics, secsg; 2.40A {Caenorhabditis elegans}

Probab=100.00  E-value=6.1e-34  Score=303.82  Aligned_cols=193  Identities=41%  Similarity=0.593  Sum_probs=158.9

Q ss_pred             hhhhhHhccHHHHHHHHHHHhhhcCCCceeecccCc------ccccchhhhhhhhhhhhHHHHHHcCCCCCCCccccccc
Q psy14319          2 KFYKYVLGDGDKVKALDRLVTKKAGFNSSHIITGQT------YSRKVDVIVTGVLSSLGASIHKKAGFNSSHIITGQTYS   75 (486)
Q Consensus         2 ~~~~~~~~d~~r~~~~~~~~~~~~g~~~~~a~~g~~------~~r~~d~~~~Gt~a~~~~~~a~~LGf~~~~~~~~av~~   75 (486)
                      +|+++|.||.+|++++.+++. .+|++|   .+|+.      ||  +||..   ...+.++++++|||..+..++.++++
T Consensus       170 ~~~~~l~rd~~rL~~~~~~l~-~lg~gg---~~GT~a~~~~~f~--~d~~~---~~~v~~~~a~~LG~~~~~~~s~~~~~  240 (478)
T 1yis_A          170 LWAQELLMAFQSLSEFRDKMR-FRGIKG---ATGTQDSFLTLFA--GDESK---VEALDELVTKKANFSNRFLITGQTYS  240 (478)
T ss_dssp             HHHHHHHHHHHHHHHHHHHCC-BCCSCT---TTSSCHHHHHHTT--TCHHH---HHHHHHHHHHHTTCSCBCSSCSSSCC
T ss_pred             HHHHHHHHHHHHHHHHHHHHH-Hhcccc---hhccchhhhcccC--cchhh---HHHHHHHHHHHhCcCCCCCccccccC
Confidence            799999999999999999995 467533   35777      75  66521   01223699999999977655568999


Q ss_pred             ccHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccccccCCCCCccCCCCCCchHHHHHHHHHHHHHHHHHHHHHhhcc
Q psy14319         76 RKVDVIVTGVLSSLGASIHKLATDLRLLAHMKEIEEPFESTQIGSSAMAYKRNPMRSERLCSLARFLMSLHQNSLATAST  155 (486)
Q Consensus        76 RD~~~e~~~~la~la~~LsRlA~DL~l~ss~~el~e~~~~~~~GSSiMPqKrNP~~~E~ir~~a~~v~g~~~~~l~~~~~  155 (486)
                      ||+++|++++++.++++|+|||+||++|++|+|+.+||..+++|||||||||||+.+|+++++|+++.|+.++.+..+..
T Consensus       241 rd~~~e~~~~l~~~a~~L~kia~Di~ll~s~~el~~p~~~~q~GSSiMP~K~NP~~~E~i~~~a~~v~g~~~~~~~~~~~  320 (478)
T 1yis_A          241 RQQDSQLVFSLSLLGAAAKKVCTDIRVLQAFGELLEPFEKDQIGSSAMPYKKNPMKSERCCALSRKLINAPQEALTILAD  320 (478)
T ss_dssp             THHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSEECC-------------CCCCHHHHHHHHHHHHHHTSHHHHHHHHHT
T ss_pred             ChHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhheeccccCCCCccccCCcccCCHHHHHHHHHHHHHHHhHHHHHHHhcc
Confidence            99999999999999999999999999999999999999878999999999999999999999999999999876777777


Q ss_pred             ccccCCCchhhHhhhchHHHHHHHHHHHHHHHHhhhccccCHHhhhhh
Q psy14319        156 QWMERTLDDSANRRLTLSESFLTTDCLLITLQNVLEGLVVYPKETYSI  203 (486)
Q Consensus       156 ~~~erDl~~~~~~~~~l~~a~~~~~~~l~~~~~vl~~l~vn~erm~~~  203 (486)
                      +|+|||+..|..++..+++++.+++.++.++..|+++|+||+++|++.
T Consensus       321 ~~~er~~~~~~~~~~~l~~~~~~~~~~l~~~~~~l~gl~vn~erm~~~  368 (478)
T 1yis_A          321 QGLERTLDDSAGRRMLIPDVLLTAEALLTTLQNIFEGLSVQTDNVKKI  368 (478)
T ss_dssp             CCTTCCGGGHHHHHHHHHHHHHHHHHHHHHHHHHHHHCEECHHHHHHH
T ss_pred             CCcccCcchHHHHHHHHHHHHHHHHHHHHHHHHHHcCCEECHHHHHHH
Confidence            899999999999999999999999999999999999999999999983

>1dof_A Adenylosuccinate lyase; purine biosynthesis; 2.10A {Pyrobaculum aerophilum} SCOP: a.127.1.1

Probab=100.00  E-value=4.6e-34  Score=298.65  Aligned_cols=214  Identities=23%  Similarity=0.284  Sum_probs=167.3

Q ss_pred             hhhhhHhccHHHHHHHHHHHhhhcCCCceeecccCcccccchhhhhhhhhhhhHHHHHHcCCCCCCCcccccccccHHHH
Q psy14319          2 KFYKYVLGDGDKVKALDRLVTKKAGFNSSHIITGQTYSRKVDVIVTGVLSSLGASIHKKAGFNSSHIITGQTYSRKVDVI   81 (486)
Q Consensus         2 ~~~~~~~~d~~r~~~~~~~~~~~~g~~~~~a~~g~~~~r~~d~~~~Gt~a~~~~~~a~~LGf~~~~~~~~av~~RD~~~e   81 (486)
                      +|+++|.|| +|++++.++++. .++|| ++.+|.+++. .+       ....++++++|||..+..++ ++++||+++|
T Consensus       158 ~~~~~l~r~-~rL~~~~~~~~~-~~lGg-AvGt~~~~~~-~~-------~~~~~~~a~~lGl~~~~~~~-~~~~rD~~~e  225 (403)
T 1dof_A          158 NYYYELYIA-CRQLALAEEFIR-AKIGG-AVGTMASWGE-LG-------LEVRRRVAERLGLPHHVITT-QVAPRESFAV  225 (403)
T ss_dssp             HHHHHHHHH-HHHHHHHHHHCC-BCCCC-TTSSCGGGGG-GH-------HHHHHHHHHHTTCCBCSSCS-SSCCHHHHHH
T ss_pred             HHHHHHHHH-HHHHHHHHHhcc-cCccH-HHhhCccccc-cc-------HHHHHHHHHHhCcCCCCCcc-hhhccHHHHH
Confidence            799999999 999999999985 35545 4445555521 11       12357999999999876443 2249999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHh--ccccccccccCCCCCccCCCCCCchHHHHHHHHHHHHHHHHHHHHHhhcccccc
Q psy14319         82 VTGVLSSLGASIHKLATDLRLLAH--MKEIEEPFESTQIGSSAMAYKRNPMRSERLCSLARFLMSLHQNSLATASTQWME  159 (486)
Q Consensus        82 ~~~~la~la~~LsRlA~DL~l~ss--~~el~e~~~~~~~GSSiMPqKrNP~~~E~ir~~a~~v~g~~~~~l~~~~~~~~e  159 (486)
                      ++++++.++++|+|||+||++|++  |+|+.+|   + +|||||||||||+.+|+++++|+++.|+..+++ .+++++||
T Consensus       226 ~~~~l~~~a~~L~kia~Dl~ll~~~e~~ei~lp---~-~GSSiMP~K~NP~~~E~i~~~a~~v~g~~~~~~-~~~~~~~e  300 (403)
T 1dof_A          226 LASALALMAAVFERLAVEIRELSRPEIGEVVEG---G-GGSSAMPHKANPTASERIVSLARYVRALTHVAF-ENVALWHE  300 (403)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHTSTTTCSEESC---C----------CCCHHHHHHHHHHHHHHHHHHHHH-HTTCCCTT
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhCCccCeEeCC---C-CccCCCCCCCCchHHHHHHHHHHHHHHHHHHHH-HcCccccc
Confidence            999999999999999999999996  9999987   4 899999999999999999999999999998754 57889999


Q ss_pred             CCCchhhHhhhchHHHHHHHHHHHHHHHHhhhccccCHHhhhhhhcCCCCCCcccccccccCCCCCCCcHHHHHHHHHHH
Q psy14319        160 RTLDDSANRRLTLSESFLTTDCLLITLQNVLEGLVVYPKETYSIRIIPDNRLSSHHTTKRSGRPGDGDKVKALDRLVTKK  239 (486)
Q Consensus       160 rDl~~~~~~~~~l~~a~~~~~~~l~~~~~vl~~l~vn~erm~~~~~~~~~~g~~~~~~~~~~~~~~g~~~~~i~~~lA~~  239 (486)
                      ||+++|..+|..+++++.++..++..+..++++|+||++||++..  ....|..              .++.+...+.+.
T Consensus       301 rd~~~~~~~~~~l~~~~~~~~~~l~~~~~~l~gl~vn~erm~~~l--~~s~~~~--------------~a~~l~~~L~~~  364 (403)
T 1dof_A          301 RDLTNSANERVWIPEALLALDEILTSALRVLKNVYIDEERITENL--QKALPYI--------------LTEFHMNRMIKE  364 (403)
T ss_dssp             CCGGGHHHHHHHHHHHHHHHHHHHHHHHHHHHHCEECHHHHHHHH--HHHHHHH--------------CHHHHHHHHHHT
T ss_pred             ccccchHHHHHHHHHHHHHHHHHHHHHHHHHCcCEECHHHHHHHH--HhccCHH--------------HHHHHHHHHhhc
Confidence            999999999999999999999999999999999999999999832  0011111              256777777775


Q ss_pred             -cCCCCCccc
Q psy14319        240 -AGFTSSHII  248 (486)
Q Consensus       240 -LGf~~a~~~  248 (486)
                       +||+.++.+
T Consensus       365 gig~~~A~~i  374 (403)
T 1dof_A          365 GASRAEAYKK  374 (403)
T ss_dssp             TCCHHHHHHH
T ss_pred             CCCHHHHHHH
Confidence             888877654

>2j91_A Adenylosuccinate lyase; disease mutation, adenylosuccinase, succino AMP-lyase, purin biosynthesis, adenylosuccinase DEFI AMP, ADSL, saicar, purine; HET: AMP; 1.8A {Homo sapiens} PDB: 2vd6_A*

Probab=100.00  E-value=2.1e-33  Score=300.89  Aligned_cols=192  Identities=55%  Similarity=0.800  Sum_probs=160.2

Q ss_pred             hhhhhHhccHHHHHHHHHHHhhhcCCCceeecccCc------ccccchhhhhhhhhhhhHHHHHHcCCCCCCCccccccc
Q psy14319          2 KFYKYVLGDGDKVKALDRLVTKKAGFNSSHIITGQT------YSRKVDVIVTGVLSSLGASIHKKAGFNSSHIITGQTYS   75 (486)
Q Consensus         2 ~~~~~~~~d~~r~~~~~~~~~~~~g~~~~~a~~g~~------~~r~~d~~~~Gt~a~~~~~~a~~LGf~~~~~~~~av~~   75 (486)
                      +|+++|.||.+|++++.+++. .+|++|   .+|+.      ||  +||..   ...+.+++++.|||..+..++.++++
T Consensus       196 ~~~~~l~rd~~RL~~~~~~l~-~lg~gG---~~GT~a~~~~~f~--~D~~~---~~~v~~~~a~~LGl~~~~~~s~~~~~  266 (503)
T 2j91_A          196 LWIQDLCMDLQNLKRVRDDLR-FRGVKG---TTGTQASFLQLFE--GDDHK---VEQLDKMVTEKAGFKRAFIITGQTYT  266 (503)
T ss_dssp             HHHHHHHHHHHHHHHHHHHCC-BCCSCC---TTSSCHHHHHHTT--TCHHH---HHHHHHHHHHHTTCSCBCSCCSSSCC
T ss_pred             HHHHHHHHHHHHHHHHHHhhc-cccccc---cccchhhhccccC--CchHH---HHHHHHHHHHHhCCCCCCCccccccc
Confidence            699999999999999999995 467533   35777      65  66521   01223699999999977655568999


Q ss_pred             ccHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccccccCCCCCccCCCCCCchHHHHHHHHHHHHHHHHHHHHHhhcc
Q psy14319         76 RKVDVIVTGVLSSLGASIHKLATDLRLLAHMKEIEEPFESTQIGSSAMAYKRNPMRSERLCSLARFLMSLHQNSLATAST  155 (486)
Q Consensus        76 RD~~~e~~~~la~la~~LsRlA~DL~l~ss~~el~e~~~~~~~GSSiMPqKrNP~~~E~ir~~a~~v~g~~~~~l~~~~~  155 (486)
                      ||+++|++++++.++++|+|||+||++|++|+||.+||..+++|||||||||||+.+|+++++|+++.|+.++.+..+..
T Consensus       267 rd~~~e~~~~la~la~~L~kia~Dirll~s~~ei~ep~~~~q~GSSiMP~K~NPv~~E~i~~~a~~v~g~~~~~~~~~~~  346 (503)
T 2j91_A          267 RKVDIEVLSVLASLGASVHKICTDIRLLANLKEMEEPFEKQQIGSSAMPYKRNPMRSERCCSLARHLMTLVMDPLQTASV  346 (503)
T ss_dssp             THHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSEECCC-----------CCCCCHHHHHHHHHHHHHHHTTHHHHHHHHT
T ss_pred             ChHHHHHHHHHHHHHHHHHHHHHHHHHHhccceeeccccCCCCCCCCCccccCcHHHHHHHHHHHHHHHHHHHHHHHHcc
Confidence            99999999999999999999999999999999999999888999999999999999999999999999999876777777


Q ss_pred             ccccCCCchhhHhhhchHHHHHHHHHHHHHHHHhhhccccCHHhhhh
Q psy14319        156 QWMERTLDDSANRRLTLSESFLTTDCLLITLQNVLEGLVVYPKETYS  202 (486)
Q Consensus       156 ~~~erDl~~~~~~~~~l~~a~~~~~~~l~~~~~vl~~l~vn~erm~~  202 (486)
                      +|+|||+..|..+|..+++++.+++.++..+..|+++|+||+++|++
T Consensus       347 ~~~erd~~~s~~~~~~l~~~~~~~~~~l~~~~~~l~gL~vn~erm~~  393 (503)
T 2j91_A          347 QWFERTLDDSANRRICLAEAFLTADTILNTLQNISEGLVVYPKVIER  393 (503)
T ss_dssp             CCTTCCGGGHHHHHHHHHHHHHHHHHHHHHHHHHHHSCEECHHHHHH
T ss_pred             CcccccccchHHHHhhHHHHHHHHHHHHHHHHHHHcCCEECHHHHHH
Confidence            89999999999999999999999999999999999999999999998

>2fel_A 3-carboxy-CIS,CIS-muconate lactonizing enzyme; biodegradation, sulphonic acids, 3-sulphomuconate; 2.20A {Agrobacterium tumefaciens} PDB: 2fen_A

Probab=99.97  E-value=3.9e-32  Score=279.91  Aligned_cols=184  Identities=20%  Similarity=0.164  Sum_probs=145.9

Q ss_pred             hhhhhHhccHHHHHHHHHHHhhhcCCCceeecccCcccccchhhhhhhhhhhhHHHHHHcCCCCCCCcccccccccHHHH
Q psy14319          2 KFYKYVLGDGDKVKALDRLVTKKAGFNSSHIITGQTYSRKVDVIVTGVLSSLGASIHKKAGFNSSHIITGQTYSRKVDVI   81 (486)
Q Consensus         2 ~~~~~~~~d~~r~~~~~~~~~~~~g~~~~~a~~g~~~~r~~d~~~~Gt~a~~~~~~a~~LGf~~~~~~~~av~~RD~~~e   81 (486)
                      +|++.|.||.+|++++.++++. +++|| ++.+|.+++.        ......++++++|||..+.   +++++||+++|
T Consensus       170 ~~~~~l~r~~~rL~~~~~~~~~-~~lGg-avGT~~~~~~--------~~~~~~~~~a~~LG~~~~~---~~~~~RD~~~e  236 (359)
T 2fel_A          170 GWIAPLERHLLRLETFAQNGFA-LQFGG-AAGTLEKLGD--------NAGAVRADLAKRLGLADRP---QWHNQRDGIAE  236 (359)
T ss_dssp             HHHHHHHHHHHHHHHHHHHCSB-CCCCC-TTSSCTTTGG--------GHHHHHHHHHHHHTCBCCC---CCTTCCHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHhh-cCCcH-HhccCccCcc--------hHHHHHHHHHHHhCcCCCc---hHHhccHHHHH
Confidence            6999999999999999999874 36645 3444444421        1112357999999999887   46679999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhc-cccccccccCCCCCccCCCCCCchHHHHHHHHHHHHHHHHHHHHHhhccccccC
Q psy14319         82 VTGVLSSLGASIHKLATDLRLLAHM-KEIEEPFESTQIGSSAMAYKRNPMRSERLCSLARFLMSLHQNSLATASTQWMER  160 (486)
Q Consensus        82 ~~~~la~la~~LsRlA~DL~l~ss~-~el~e~~~~~~~GSSiMPqKrNP~~~E~ir~~a~~v~g~~~~~l~~~~~~~~er  160 (486)
                      ++++++.++++|+|||+||++|++- +|+.+|+   ++|||||||||||+.+|+++++++++.|++.+ ++.++.+|+||
T Consensus       237 ~~~~l~~~a~~L~kia~Dirll~s~e~Ei~~~~---~~GSS~MP~K~NP~~~E~i~~~a~~v~~~~~~-~~~~~~~~~er  312 (359)
T 2fel_A          237 FANLLSLVTGTLGKFGQDIALMAEIGSEIRLSG---GGGSSAMPHKQNPVNAETLVTLARFNAVQISA-LHQSLVQEQER  312 (359)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHCTTEEEC---------------CCHHHHHHHHHHHHHHHHHHH-HHHTTCCCSSB
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhCCCCeecCCC---CCCCccCCcccCCHHHHHHHHHHHHHHHHHHH-HHHHhhccCCC
Confidence            9999999999999999999999953 6898876   48999999999999999999999999999987 44678999999


Q ss_pred             CCchhhHhhhchHHHHHHHHHHHHHHHHhhhccccCHHhhhh
Q psy14319        161 TLDDSANRRLTLSESFLTTDCLLITLQNVLEGLVVYPKETYS  202 (486)
Q Consensus       161 Dl~~~~~~~~~l~~a~~~~~~~l~~~~~vl~~l~vn~erm~~  202 (486)
                      |...|..+|..+|+++.+++.+|..+..++++|+||++||..
T Consensus       313 ~~~~~~~e~~~lp~~~~~~~~~L~~~~~v~~~l~v~~~~m~~  354 (359)
T 2fel_A          313 SGAGWMLEWLTLPQMVTATGTSLLVAERLAAQIDRLGADESH  354 (359)
T ss_dssp             CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEEEECC----
T ss_pred             CCcccHHHHHHHHHHHHHHHHHHHHHHHHHccCEECHHHhCc
Confidence            999999999999999999999999999999999999999964

>1fur_A Fumarase C, FUMC; hydrolyase, carbon oxygen lyase, KREB'S cycle enzyme, fumara hydratase; 1.95A {Escherichia coli} SCOP: a.127.1.1 PDB: 1fuo_A* 1yfe_A 1kq7_A* 1fuq_A* 1fup_A* 2fus_A* 3tv2_A

Probab=99.97  E-value=2.7e-31  Score=282.21  Aligned_cols=191  Identities=16%  Similarity=0.088  Sum_probs=163.1

Q ss_pred             hhhhhHhccHHHHHHHHHHHhhhcCCCceeecccCcccccchhhhhhhhhhhhHHHHHHcCCCCC--CCcccccccccHH
Q psy14319          2 KFYKYVLGDGDKVKALDRLVTKKAGFNSSHIITGQTYSRKVDVIVTGVLSSLGASIHKKAGFNSS--HIITGQTYSRKVD   79 (486)
Q Consensus         2 ~~~~~~~~d~~r~~~~~~~~~~~~g~~~~~a~~g~~~~r~~d~~~~Gt~a~~~~~~a~~LGf~~~--~~~~~av~~RD~~   79 (486)
                      +|+++|.||.+|++++.++++.. ++| .+|+ |+.++  +|+.   ....+-+++|++|||..+  .|+++++++||++
T Consensus       203 ~~~~~l~r~~~rL~~~~~~l~~~-~lG-gtAv-GT~~~--~~~~---~~~~v~~~la~~LGl~~~~~~n~~~a~~~rD~~  274 (467)
T 1fur_A          203 GWVAMLEHNLKHIEYSLPHVAEL-ALG-GTAV-GTGLN--THPE---YARRVADELAVITCAPFVTAPNKFEALATCDAL  274 (467)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHTEE-CTT-CTTT-SSCTT--SCTT---HHHHHHHHHHHHHTSCCEECSCHHHHHHCCHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHhhc-CcC-cchh-cCCcc--CChh---HHHHHHHHHHHHhCCCCccCCCHHHHHhcCHHH
Confidence            79999999999999999999853 442 3477 88885  6641   111233479999999953  3677999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHh-----ccccccccccCCCCCccCCCCCCchHHHHHHHHHHHHHHHHHHHHHhhc
Q psy14319         80 VIVTGVLSSLGASIHKLATDLRLLAH-----MKEIEEPFESTQIGSSAMAYKRNPMRSERLCSLARFLMSLHQNSLATAS  154 (486)
Q Consensus        80 ~e~~~~la~la~~LsRlA~DL~l~ss-----~~el~e~~~~~~~GSSiMPqKrNP~~~E~ir~~a~~v~g~~~~~l~~~~  154 (486)
                      +|++++++.++++|+|||+||++|+|     |+||.+|+  +++|||||||||||+.+|+++++|+++.|+..+++..+.
T Consensus       275 ~e~~~~l~~la~~L~kia~Dl~ll~S~~r~~~gei~lp~--~~~GSSiMP~K~NP~~~E~i~~~a~~v~g~~~~~~~~~~  352 (467)
T 1fur_A          275 VQAHGALKGLAASLMKIANDVRWLASGPRCGIGEISIPE--NEPGSSIMPGKVNPTQCEALTMLCCQVMGNDVAINMGGA  352 (467)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHTCCSSSSCCSEECCC--CSCCCTTCTTCCCCHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhCCCccCceeEECCC--CCCCCCCCCcccCCHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            99999999999999999999999994     99999986  569999999999999999999999999999998776666


Q ss_pred             cccccCCCchhhHhhhchHHHHHHHHHHHHHH-HHhhhccccCHHhhhhh
Q psy14319        155 TQWMERTLDDSANRRLTLSESFLTTDCLLITL-QNVLEGLVVYPKETYSI  203 (486)
Q Consensus       155 ~~~~erDl~~~~~~~~~l~~a~~~~~~~l~~~-~~vl~~l~vn~erm~~~  203 (486)
                      .+|+|++...+..++. +++++.++..++..+ ..++++|+||++||++.
T Consensus       353 ~g~~e~~~~~~~~~~~-l~~s~~~l~~~l~~~~~~~l~gl~vn~erm~~~  401 (467)
T 1fur_A          353 SGNFELNVFRPMVIHN-FLQSVRLLADGMESFNKHCAVGIEPNRERINQL  401 (467)
T ss_dssp             TCBTTBCCCHHHHHHH-HHHHHHHHHHHHHHHHHHTGGGCEECHHHHHHH
T ss_pred             cCCccccchhhHHHHH-HHHHHHHHHHHHHHHHHHHHccCeeCHHHHHHH
Confidence            7899999999988754 568888888888888 66999999999999983

>1vdk_A Fumarase C, fumarate hydratase class II; TCA cycle, riken structural genomics/proteomics in RSGI, structural genomics, lyase; 1.80A {Thermus thermophilus} SCOP: a.127.1.1

Probab=99.97  E-value=4.6e-31  Score=280.46  Aligned_cols=191  Identities=15%  Similarity=0.134  Sum_probs=163.1

Q ss_pred             hhhhhHhccHHHHHHHHHHHhhhcCCCceeecccCcccccchhhhhhhhhhhhHHHHHHcCCCC-C-CCcccccccccHH
Q psy14319          2 KFYKYVLGDGDKVKALDRLVTKKAGFNSSHIITGQTYSRKVDVIVTGVLSSLGASIHKKAGFNS-S-HIITGQTYSRKVD   79 (486)
Q Consensus         2 ~~~~~~~~d~~r~~~~~~~~~~~~g~~~~~a~~g~~~~r~~d~~~~Gt~a~~~~~~a~~LGf~~-~-~~~~~av~~RD~~   79 (486)
                      +|+++|.||.+|++++.++++.. ++| .+|+ |+.++  +|+.   ....+-++++++|||.. + .++.+++++||++
T Consensus       203 ~~~~~l~r~~~RL~~~~~~~~~~-~lG-g~Av-GT~~~--~~~~---~~~~v~~~la~~LG~~~~~~~n~~~a~~~rD~~  274 (466)
T 1vdk_A          203 SWAAQLKTTLAAVKEMEKGLYNL-AIG-GTAV-GTGLN--AHPR---FGELVAKYLAEETGLPFRVAENRFAALAAHDEL  274 (466)
T ss_dssp             HHHHHHHHHHHHHHHHHGGGGEE-CTT-CTTT-SSCTT--SCTT---HHHHHHHHHHHHHSSCCEECSCTTHHHHCCHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHhhc-CCC-cccc-CCCcc--CCch---HHHHHHHHHHHHcCCCCCCCcchHHHHhccHHH
Confidence            79999999999999999999853 442 4566 88885  6641   11223347999999995 3 4567999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHh-----ccccccccccCCCCCccCCCCCCchHHHHHHHHHHHHHHHHHHHHHhhc
Q psy14319         80 VIVTGVLSSLGASIHKLATDLRLLAH-----MKEIEEPFESTQIGSSAMAYKRNPMRSERLCSLARFLMSLHQNSLATAS  154 (486)
Q Consensus        80 ~e~~~~la~la~~LsRlA~DL~l~ss-----~~el~e~~~~~~~GSSiMPqKrNP~~~E~ir~~a~~v~g~~~~~l~~~~  154 (486)
                      +|++++++.++++|+|||+||++|+|     |+||.+|+  +++|||||||||||+.+|+++++|+++.|+..+++....
T Consensus       275 ~e~~~~l~~la~~L~kia~Dl~ll~S~~r~~~gei~lp~--~~~GSSiMP~K~NP~~~E~i~~~a~~v~g~~~~~~~~~~  352 (466)
T 1vdk_A          275 VNVMGAIRTLAGALMKIGNDVRWLASGPYAGIGEITIPA--NEPGSSIMPGKVNPTQVEALTMVVVRVYGNDHTVAFAGS  352 (466)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHTCBSSSSCCSEECCC--CSCCSSCCTTCCCCHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCceeEECCC--CCCcCCCCCCCCCcHHHHHHHHHHHHHHhHHHHHHHHHH
Confidence            99999999999999999999999994     99999987  479999999999999999999999999999998776655


Q ss_pred             cccccCCCchhhHhhhchHHHHHHHHHHHHHH-HHhhhccccCHHhhhhh
Q psy14319        155 TQWMERTLDDSANRRLTLSESFLTTDCLLITL-QNVLEGLVVYPKETYSI  203 (486)
Q Consensus       155 ~~~~erDl~~~~~~~~~l~~a~~~~~~~l~~~-~~vl~~l~vn~erm~~~  203 (486)
                      .++++++...+.. +..+++++..+..++..+ ..|+++|+||++||++.
T Consensus       353 ~g~~e~~~~~~~~-~~~l~~s~~~l~~~l~~~~~~~l~gl~vn~erm~~~  401 (466)
T 1vdk_A          353 QGNFQLNVYKPVM-AYSTLESINLLADAVASFDAHLAQGIEPNLERIEEY  401 (466)
T ss_dssp             TCBTTBCSCHHHH-HHHHHHHHHHHHHHHHHHHHHTGGGCEECHHHHHHH
T ss_pred             ccchhhhhhhHHH-HHHHHHHHHHHHHHHHHHHHHHhccCEEcHHHHHHH
Confidence            5788998888775 667889999999999999 56999999999999984

>1jsw_A L-aspartase, L-aspartate ammonia-lyase; amino acid ammonia-lyase; HET: BGC; 2.70A {Escherichia coli} SCOP: a.127.1.1

Probab=99.97  E-value=1.1e-30  Score=278.49  Aligned_cols=191  Identities=18%  Similarity=0.204  Sum_probs=162.1

Q ss_pred             hhhhhHhccHHHHHHHHHHHhhhcCCCceeecccCcccccchhhhhhhhhhhhHHHHHHcCCCC-C-CCcccccccccHH
Q psy14319          2 KFYKYVLGDGDKVKALDRLVTKKAGFNSSHIITGQTYSRKVDVIVTGVLSSLGASIHKKAGFNS-S-HIITGQTYSRKVD   79 (486)
Q Consensus         2 ~~~~~~~~d~~r~~~~~~~~~~~~g~~~~~a~~g~~~~r~~d~~~~Gt~a~~~~~~a~~LGf~~-~-~~~~~av~~RD~~   79 (486)
                      +|+++|.||.+|++++.++++.. ++| .+|+ |+.++  +|+..   -..+.++++++|||.. + .++.|++++||++
T Consensus       206 ~~~~~l~rd~~RL~~~~~~~~~~-~lG-g~Av-GT~~~--~~~~~---~~~v~~~la~~LGl~~~~~~n~~da~~~rD~~  277 (478)
T 1jsw_A          206 AFSILLKEEVKNIQRTAELLLEV-NLG-ATAI-GTGLN--TPKEY---SPLAVKKLAEVTGFPCVPAEDLIEATSDCGAY  277 (478)
T ss_dssp             HHHHHHHHHHHHHHHHHHHTTEE-CCS-CCSS-SSCSS--CTTTH---HHHHHHHHHHHHCCCCEECSCSSSBTTBCHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHhccC-CCC-Cccc-cCCcc--CCcch---HHHHHHHHHHHcCCCCCcCCCHHHHHhccHHH
Confidence            79999999999999999999853 442 4566 88775  66411   1223347999999994 3 4567999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHh-----ccccccccccCCCCCccCCCCCCchHHHHHHHHHHHHHHHHHHHHHhhc
Q psy14319         80 VIVTGVLSSLGASIHKLATDLRLLAH-----MKEIEEPFESTQIGSSAMAYKRNPMRSERLCSLARFLMSLHQNSLATAS  154 (486)
Q Consensus        80 ~e~~~~la~la~~LsRlA~DL~l~ss-----~~el~e~~~~~~~GSSiMPqKrNP~~~E~ir~~a~~v~g~~~~~l~~~~  154 (486)
                      +|++++++.++++|+|||+||++|+|     |+||.+|+  +++|||||||||||+.+|+++++|+++.|+..+++....
T Consensus       278 ~e~~~~l~~la~~L~kia~Dl~ll~S~pr~e~gei~lp~--~~~GSSiMP~K~NP~~~E~i~~~a~~v~g~~~~~~~~~~  355 (478)
T 1jsw_A          278 VMVHGALKRLAVKMSKICNDLRLLSSGPRAGLNEINLPE--LQAGSSIMPAKVNPVVPEVVNQVCFKVIGNDTTVTMAAE  355 (478)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHCSTTTSCCCEECCC--CSCCCSSCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhCCCccCceeEECCC--CCCCCCCCCcccCCHHHHHHHHHHHHHHhHHHHHHHHHh
Confidence            99999999999999999999999993     99999986  789999999999999999999999999999998766666


Q ss_pred             cccccCCCchhhHhhhchHHHHHHHHHHHHHHH-HhhhccccCHHhhhhh
Q psy14319        155 TQWMERTLDDSANRRLTLSESFLTTDCLLITLQ-NVLEGLVVYPKETYSI  203 (486)
Q Consensus       155 ~~~~erDl~~~~~~~~~l~~a~~~~~~~l~~~~-~vl~~l~vn~erm~~~  203 (486)
                      .+++++++..+. .+..+++++.++..++..+. .++++|+||++||++.
T Consensus       356 ~~~~e~~~~~p~-~~~~l~~s~~~l~~~l~~~~~~~l~gl~vn~erm~~~  404 (478)
T 1jsw_A          356 AGQLQLNVMEPV-IGQAMFESVHILTNACYNLLEKCINGITANKEVCEGY  404 (478)
T ss_dssp             TCBTTBCTTHHH-HHHHHHHHHHHHHHHHHHHHHHTGGGCEECHHHHHHH
T ss_pred             ccchhhcccchH-HHHHHHHHHHHHHHHHHHHHHHHHccCeecHHHHHHH
Confidence            678999987754 34568899999999999997 6999999999999984

>3gtd_A Fumarase C, fumarate hydratase class II; structural genomics, ssgcid, lyase, tricarboxylic acid cycle; 2.40A {Rickettsia prowazekii}

Probab=99.97  E-value=5.1e-31  Score=279.37  Aligned_cols=191  Identities=17%  Similarity=0.143  Sum_probs=165.9

Q ss_pred             hhhhhHhccHHHHHHHHHHHhhhcCCCceeecccCcccccchhhhhhhhhhhhHHHHHHcCCCCC--CCcccccccccHH
Q psy14319          2 KFYKYVLGDGDKVKALDRLVTKKAGFNSSHIITGQTYSRKVDVIVTGVLSSLGASIHKKAGFNSS--HIITGQTYSRKVD   79 (486)
Q Consensus         2 ~~~~~~~~d~~r~~~~~~~~~~~~g~~~~~a~~g~~~~r~~d~~~~Gt~a~~~~~~a~~LGf~~~--~~~~~av~~RD~~   79 (486)
                      +|+++|.||.+|++++.++++. +++|| +|+ |+.++  +|+.   ....+.++++++|||..+  .++.+++++||++
T Consensus       224 ~~~~~l~rd~~RL~~~~~~l~~-~~lGg-tAv-GT~~~--~~~~---~~~~v~~~la~~lGl~~~~~~n~~da~~~rD~~  295 (482)
T 3gtd_A          224 GYITQIEYALERIEDALKKVYL-LAQGG-TAV-GTGIN--SKIG---FDIKFAQKVAEFTQQPFKTAPNKFESLAAHDAL  295 (482)
T ss_dssp             HHHHHHHHHHHHHHHHHTTTTE-ECTTC-TTT-SSCTT--SCTT---HHHHHHHHHHHHHTSCCEECSCHHHHHHCCHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHH-hCCCC-ccc-cCCCc--CCch---hHHHHHHHHHHHhCCCCccccchhhhhcCcHHH
Confidence            6999999999999999999975 35534 455 88774  4431   011223589999999974  4567999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHh-----ccccccccccCCCCCccCCCCCCchHHHHHHHHHHHHHHHHHHHHHhhc
Q psy14319         80 VIVTGVLSSLGASIHKLATDLRLLAH-----MKEIEEPFESTQIGSSAMAYKRNPMRSERLCSLARFLMSLHQNSLATAS  154 (486)
Q Consensus        80 ~e~~~~la~la~~LsRlA~DL~l~ss-----~~el~e~~~~~~~GSSiMPqKrNP~~~E~ir~~a~~v~g~~~~~l~~~~  154 (486)
                      +|++++++.++++|+|||+||++|+|     |+||.+|  ++++|||||||||||+.+|.++++|+++.|+..++.+.+.
T Consensus       296 ~e~~~~L~~la~~L~Kia~DlrllsSgpr~g~gEi~lp--~~~~GSSiMP~K~NPv~~E~i~~~a~~v~G~~~~i~~a~~  373 (482)
T 3gtd_A          296 VEFSGTLNTIAVSLMKIANDIRLLGSGPRCGLGELHLP--ENEPGSSIMPGKVNPTQVEALTMVCTQVMGNHVTVTIAGS  373 (482)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHTCCSSSSCCCEECC--CCSCCCSSSTTCCCCHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhCCCccCeeEEECC--CCCCCCCCCCCCCCcHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            99999999999999999999999994     9999887  4689999999999999999999999999999988777888


Q ss_pred             cccccCCCchhhHhhhchHHHHHHHHHHHHHHHHhhhccccCHHhhhh
Q psy14319        155 TQWMERTLDDSANRRLTLSESFLTTDCLLITLQNVLEGLVVYPKETYS  202 (486)
Q Consensus       155 ~~~~erDl~~~~~~~~~l~~a~~~~~~~l~~~~~vl~~l~vn~erm~~  202 (486)
                      .+++|++...+...+..++++..+.+.++.+...|+++|+||++||++
T Consensus       374 ~g~~eln~~~pl~~~~~l~s~~ll~~~~~~~~~~~v~gl~vn~erm~~  421 (482)
T 3gtd_A          374 NGHLELNVFKPVIIYNILQSIELLSDSVNSFVTHCVKGLEPNIARINT  421 (482)
T ss_dssp             CCBTTBCCCHHHHHHHHHHHHHHHHHHHHHHHHHTTTTCEECHHHHHH
T ss_pred             cccchhcccchHHHHHHHHHHHHHHHHHHHHHHHHHccCEECHHHHHH
Confidence            899999998888888899999999999999999999999999999998

>1yfm_A Fumarase, YFUM; lyase, krebs cycle, active site water, hydratase, subunit active site; 2.60A {Saccharomyces cerevisiae} SCOP: a.127.1.1

Probab=99.97  E-value=2.2e-30  Score=275.98  Aligned_cols=191  Identities=18%  Similarity=0.158  Sum_probs=161.4

Q ss_pred             hhhhhHhccHHHHHHHHHHHhhhcCCCceeecccCcccccchhhhhhhhhhhhHHHHHHcCCCCC--CCcccccccccHH
Q psy14319          2 KFYKYVLGDGDKVKALDRLVTKKAGFNSSHIITGQTYSRKVDVIVTGVLSSLGASIHKKAGFNSS--HIITGQTYSRKVD   79 (486)
Q Consensus         2 ~~~~~~~~d~~r~~~~~~~~~~~~g~~~~~a~~g~~~~r~~d~~~~Gt~a~~~~~~a~~LGf~~~--~~~~~av~~RD~~   79 (486)
                      +|+++|.||.+|++++.+++... ++| .+|+ |+.++  +|+.   ....+-+++|++|||..+  .++.+++++||++
T Consensus       228 ~~~~~l~rd~~RL~~~~~~l~~~-~lG-gtAv-GT~~~--~~~~---~~~~v~~~la~~lGl~~~~~~n~~~a~~~rD~~  299 (488)
T 1yfm_A          228 GYVQQVENGIQRVAHSLKTLSFL-AQG-GTAV-GTGLN--TKPG---FDVKIAEQISKETGLKFQTAPNRFEALAAHDAI  299 (488)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHTEE-CTT-CTTT-SSCTT--SCTT---HHHHHHHHHHHHHSSCCEECSCHHHHHHCCHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHhhc-CCC-Cccc-cCCcc--CChh---HHHHHHHHHHHHhCCCCccCccHHHHHhccHHH
Confidence            79999999999999999999853 442 4566 88875  6541   111233478999999963  3556999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHh-----ccccccccccCCCCCccCCCCCCchHHHHHHHHHHHHHHHHHHHHHhhc
Q psy14319         80 VIVTGVLSSLGASIHKLATDLRLLAH-----MKEIEEPFESTQIGSSAMAYKRNPMRSERLCSLARFLMSLHQNSLATAS  154 (486)
Q Consensus        80 ~e~~~~la~la~~LsRlA~DL~l~ss-----~~el~e~~~~~~~GSSiMPqKrNP~~~E~ir~~a~~v~g~~~~~l~~~~  154 (486)
                      +|++++++.++++|+|||+||++|+|     |+||.+|+  +++|||||||||||+.+|.++++|+++.|+..+++..+.
T Consensus       300 ~e~~~~L~~la~~L~Kia~DlrllsS~pr~g~gei~lp~--~~~GSSiMP~K~NPv~~E~i~~~a~~v~G~~~~i~~a~~  377 (488)
T 1yfm_A          300 VECSGALNTLACSLFKIAQDIRYLGSGPRCGYHELMLPE--NEPGSSIMPGKVNPTQNEALTQVCVQVMGNNAAITFAGS  377 (488)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHTCCSSSSCCCEECCC--CSCCCTTSTTCCCCHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhCCCcCCceeEECCC--CCCcCCCcccccCcHHHHHHHHHHHHHHhHHHHHHHHHh
Confidence            99999999999999999999999994     99999986  579999999999999999999999999999998776666


Q ss_pred             cccccCCCchhhHhhhchHHHHHHHHHHHHHH-HHhhhccccCHHhhhhh
Q psy14319        155 TQWMERTLDDSANRRLTLSESFLTTDCLLITL-QNVLEGLVVYPKETYSI  203 (486)
Q Consensus       155 ~~~~erDl~~~~~~~~~l~~a~~~~~~~l~~~-~~vl~~l~vn~erm~~~  203 (486)
                      .++++++...+.. +..+++++.++..++..+ ..|+++|+||++||++.
T Consensus       378 ~g~~eln~~~p~~-~~~l~~s~~~l~~~l~~~~~~~i~gl~vn~erm~~~  426 (488)
T 1yfm_A          378 QGQFELNVFKPVM-IANLLNSIRLITDAAYSFRVHCVEGIKANEPRIHEL  426 (488)
T ss_dssp             CCBTTBCSCHHHH-HHHHHHHHHHHHHHHHHHHHHTGGGCEECHHHHHHH
T ss_pred             cccchhhhhhHHH-HHHHHHHHHHHHHHHHHHHHHHHccCEECHHHHHHH
Confidence            6789998888765 556788889888888888 56999999999999883

>3e04_A Fumarase, fumarate hydratase; TCA cycle, structural genomics consortium, alterna initiation, anti-oncogene, cell cycle, disease mutation; 1.95A {Homo sapiens}

Probab=99.97  E-value=1.3e-30  Score=276.60  Aligned_cols=191  Identities=18%  Similarity=0.183  Sum_probs=159.8

Q ss_pred             hhhhhHhccHHHHHHHHHHHhhhcCCCceeecccCcccccchhhhhhhhhhhhHHHHHHcCCCCC--CCcccccccccHH
Q psy14319          2 KFYKYVLGDGDKVKALDRLVTKKAGFNSSHIITGQTYSRKVDVIVTGVLSSLGASIHKKAGFNSS--HIITGQTYSRKVD   79 (486)
Q Consensus         2 ~~~~~~~~d~~r~~~~~~~~~~~~g~~~~~a~~g~~~~r~~d~~~~Gt~a~~~~~~a~~LGf~~~--~~~~~av~~RD~~   79 (486)
                      +|+++|.||.+|++++.++++. +++|| +|+ |+.++  +|+.   ....+.++++++|||..+  .++++++++||++
T Consensus       230 ~~a~~l~rd~~RL~~~~~~l~~-~~lGg-tAv-GTg~~--~~~~---~~~~v~~~la~~lGl~~~~~~n~~da~~~rD~~  301 (490)
T 3e04_A          230 GYVQQVKYAMTRIKAAMPRIYE-LAAGG-TAV-GTGLN--TRIG---FAEKVAAKVAALTGLPFVTAPNKFEALAAHDAL  301 (490)
T ss_dssp             HHHHHHHHHHHHHHHTCTTTSE-ECTTC-TTT-SSCTT--SCTT---HHHHHHHHHHHHHTSCCEECSCHHHHHHCCHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHH-hCCCC-ccc-cCCCc--CChh---HHHHHHHHHHHHhCCCCcCCCCHHHHHhccHHH
Confidence            6999999999999999999975 34433 455 88764  4431   111234589999999963  4567999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHh-----ccccccccccCCCCCccCCCCCCchHHHHHHHHHHHHHHHHHHHHHhhc
Q psy14319         80 VIVTGVLSSLGASIHKLATDLRLLAH-----MKEIEEPFESTQIGSSAMAYKRNPMRSERLCSLARFLMSLHQNSLATAS  154 (486)
Q Consensus        80 ~e~~~~la~la~~LsRlA~DL~l~ss-----~~el~e~~~~~~~GSSiMPqKrNP~~~E~ir~~a~~v~g~~~~~l~~~~  154 (486)
                      +|++++++.++++|+|||+||++|+|     |+||.+|  +.++|||||||||||+.+|.++++|+++.|+..++.+.+.
T Consensus       302 ve~~~~L~~la~~L~Kia~DlrllsSgpr~g~gEi~lp--~~~~GSSiMP~K~NPv~~E~i~~~a~~v~G~~~ai~~a~~  379 (490)
T 3e04_A          302 VELSGAMNTTACSLMKIANDIRFLGSGPRSGLGELILP--ENEPGSSIMPGKVNPTQCEAMTMVAAQVMGNHVAVTVGGS  379 (490)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHTCCSSSSCCCEECC--CCSCC-----CCCCCHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCeeEEECC--CCCCCCCCCCCCCCcHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            99999999999999999999999995     9999887  4689999999999999999999999999999988777888


Q ss_pred             cccccCCCchhhHhhhchHHHHHHHHHHHHHHHHhhhccccCHHhhhh
Q psy14319        155 TQWMERTLDDSANRRLTLSESFLTTDCLLITLQNVLEGLVVYPKETYS  202 (486)
Q Consensus       155 ~~~~erDl~~~~~~~~~l~~a~~~~~~~l~~~~~vl~~l~vn~erm~~  202 (486)
                      .+++|++...+...+..++++..+.+.++.+...|+++|+||++||++
T Consensus       380 ~g~~eln~~~p~~~~~ll~s~~ll~~~~~~~~~~~v~gl~vn~erm~~  427 (490)
T 3e04_A          380 NGHFELNVFKPMMIKNVLHSARLLGDASVSFTENCVVGIQANTERINK  427 (490)
T ss_dssp             TCBTTBCCCHHHHHHHHHHHHHHHHHHHHHHHHHTGGGCEECHHHHHH
T ss_pred             cccccccccchHHHHHHHHHHHHHHHHHHHHHHHHHccCEECHHHHHH
Confidence            889999998888778888889899999999999999999999999998

>3r6q_A Aspartase; aspartate ammonia lyase, lyase; 2.40A {Bacillus SP} SCOP: a.127.1.1 PDB: 1j3u_A 3r6v_A 3r6y_A

Probab=99.97  E-value=3.1e-30  Score=273.71  Aligned_cols=191  Identities=18%  Similarity=0.216  Sum_probs=158.2

Q ss_pred             hhhhhHhccHHHHHHHHHHHhhhcCCCceeecccCcccccchhhhhhhhhhhhHHHHHHcCCCCC--CCcccccccccHH
Q psy14319          2 KFYKYVLGDGDKVKALDRLVTKKAGFNSSHIITGQTYSRKVDVIVTGVLSSLGASIHKKAGFNSS--HIITGQTYSRKVD   79 (486)
Q Consensus         2 ~~~~~~~~d~~r~~~~~~~~~~~~g~~~~~a~~g~~~~r~~d~~~~Gt~a~~~~~~a~~LGf~~~--~~~~~av~~RD~~   79 (486)
                      +|+++|.||.+|++++.+++... ++|| +|+ |+.++  +|+..   -....++++++|||..+  .|.++++++||++
T Consensus       203 ~~~~~l~rd~~RL~~~~~~l~~~-~lGg-tAv-GT~~~--~~~~~---~~~v~~~la~~lGl~~~~~~n~~~a~~~rD~~  274 (468)
T 3r6q_A          203 AYARVIARDIERIANTRNNLYDI-NMGA-TAV-GTGLN--ADPEY---ISIVTEHLAKFSGHPLRSAQHLVDATQNTDCY  274 (468)
T ss_dssp             HHHHHHHHHHHHHHHTHHHHTEE-CTTC-TTT-SSCTT--CCHHH---HHHHHHHHHHHHCSCCEECSCHHHHHHCCHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHhhc-CCCC-eec-CCCCC--CChHH---HHHHHHHHHHHhCCCCccccchHHHHhccHHH
Confidence            79999999999999999999853 4423 466 87774  55411   11123467999999964  4667999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHh-----ccccccccccCCCCCccCCCCCCchHHHHHHHHHHHHHHHHHHHHHhhc
Q psy14319         80 VIVTGVLSSLGASIHKLATDLRLLAH-----MKEIEEPFESTQIGSSAMAYKRNPMRSERLCSLARFLMSLHQNSLATAS  154 (486)
Q Consensus        80 ~e~~~~la~la~~LsRlA~DL~l~ss-----~~el~e~~~~~~~GSSiMPqKrNP~~~E~ir~~a~~v~g~~~~~l~~~~  154 (486)
                      +|++++++.++++|+|||+||++|+|     |+||.+|  ..++|||||||||||+.+|.++++|+++.|+..++.+...
T Consensus       275 ~e~~~~l~~la~~L~Kia~DlrllsS~pr~g~gei~lp--~~~~GSSiMP~K~NP~~~E~i~~~a~~v~G~~~~i~~a~~  352 (468)
T 3r6q_A          275 TEVSSALKVCMINMSKIANDLRLMASGPRAGLSEIVLP--ARQPGSSIMPGKVNPVMPEVMNQVAFQVFGNDLTITSASE  352 (468)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHCBSSSSCCCEECC--CCSCCCTTSTTCCCCHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCeeEEECC--CCCCCCCCCCCCCCcHHHHHHHHHHHHHHhHHHHHHHHHH
Confidence            99999999999999999999999994     9999987  3689999999999999999999999999999988666655


Q ss_pred             cccccCCCchhhHhhhchHHHHHHHHHHHHHHH-HhhhccccCHHhhhhh
Q psy14319        155 TQWMERTLDDSANRRLTLSESFLTTDCLLITLQ-NVLEGLVVYPKETYSI  203 (486)
Q Consensus       155 ~~~~erDl~~~~~~~~~l~~a~~~~~~~l~~~~-~vl~~l~vn~erm~~~  203 (486)
                      .++++++...+. .+..+++++.++..++..+. .|+++|+||++||++.
T Consensus       353 ~g~~eln~~~p~-i~~~l~~s~~~l~~~l~~~~~~~i~gl~vn~erm~~~  401 (468)
T 3r6q_A          353 AGQFELNVMEPV-LFFNLIQSISIMTNVFKSFTENCLKGIKANEERMKEY  401 (468)
T ss_dssp             TCBTTBCTTHHH-HHHHHHHHHHHHHHHHHHHHHHTGGGCEECHHHHHHH
T ss_pred             cCchhhhhhHHH-HHHHHHHHHHHHHHHHHHHHHHHHccCEECHHHHHHH
Confidence            567777654432 24457899999999999999 9999999999999984

>2qga_B Adenylosuccinate lyase; malaria, PV003765, SGC, structural G consortium; HET: AMP; 2.01A {Plasmodium vivax} PDB: 2hvg_A

Probab=99.97  E-value=1.8e-30  Score=276.03  Aligned_cols=186  Identities=15%  Similarity=0.116  Sum_probs=147.5

Q ss_pred             hhhhhHhccHHHHHHHHHHHhhhcCCCceeecccC------cccccchhhhhhhhhhhhHHHHH-HcCCCCCCCcccccc
Q psy14319          2 KFYKYVLGDGDKVKALDRLVTKKAGFNSSHIITGQ------TYSRKVDVIVTGVLSSLGASIHK-KAGFNSSHIITGQTY   74 (486)
Q Consensus         2 ~~~~~~~~d~~r~~~~~~~~~~~~g~~~~~a~~g~------~~~r~~d~~~~Gt~a~~~~~~a~-~LGf~~~~~~~~av~   74 (486)
                      +|+++|.||.+|++++.     ..|. +++|+ |+      +|| .+||.      .+.+.+++ +|||..+.. .++++
T Consensus       185 ~~~~~l~r~~~rL~~~~-----~~~~-~~GAv-GT~~a~~~~~p-~~d~~------~~~~~~~~~~LGl~~~~~-~~~~~  249 (465)
T 2qga_B          185 NFYARIHHHVGVIRRVK-----VCAK-FNGAV-GNFNAHKVASK-DTDWV------NTIGLFLKKHFNLTYSIY-CTQIQ  249 (465)
T ss_dssp             HHHHHHHHHHHHHHHSC-----CEEC-CCCTT-SSCHHHHHHCT-TCCHH------HHHHHHHHHHHCCEECCC-CSSSC
T ss_pred             HHHHHHHHHHHHHHHHH-----Hhcc-ccchh-cCccccccccC-cccHH------HHHHHHHHHHhCCCCCCC-ccchh
Confidence            69999999999999876     1232 24666 77      333 23331      12344444 599987764 48899


Q ss_pred             cccHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccccccCCCCCccCCCCCCchHHHHHHHHHHHHHHHHHHHHHhhc
Q psy14319         75 SRKVDVIVTGVLSSLGASIHKLATDLRLLAHMKEIEEPFESTQIGSSAMAYKRNPMRSERLCSLARFLMSLHQNSLATAS  154 (486)
Q Consensus        75 ~RD~~~e~~~~la~la~~LsRlA~DL~l~ss~~el~e~~~~~~~GSSiMPqKrNP~~~E~ir~~a~~v~g~~~~~l~~~~  154 (486)
                      +||+++|++++++.++++|+|||+||++|++-+++.++++++++|||||||||||+.+|+++++++.+.+....++....
T Consensus       250 ~rD~~~e~~~~l~~~a~~L~kia~Di~ll~s~~~~~e~~~~~~~GSSiMP~K~NP~~~e~~~g~~~~~~~~~~~~~~~l~  329 (465)
T 2qga_B          250 DHDYICELCDGLARANGTLIDLCVDIWLYISNNLLKLKVKEKEVGSSTMPHKVNPIDFENAEGNLHIANAFFKLFSSKLP  329 (465)
T ss_dssp             CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSEEEC-------CCSCTTCCCCHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred             ccHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCcceeeeCCCCCCCCCCCCCCCChHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence            99999999999999999999999999999984446677788999999999999999999999999999998876554445


Q ss_pred             cccccCCCchhhHhhhchHHHHHHHHHHHHHHHHhhhccccCHHhhhhh
Q psy14319        155 TQWMERTLDDSANRRLTLSESFLTTDCLLITLQNVLEGLVVYPKETYSI  203 (486)
Q Consensus       155 ~~~~erDl~~~~~~~~~l~~a~~~~~~~l~~~~~vl~~l~vn~erm~~~  203 (486)
                      +++||||+++|+.++. +++++..+..++..+..++++|+||+++|++.
T Consensus       330 ~~~~erdl~~s~~~r~-l~~~~~~~~~~l~~~~~~l~~l~vn~~~m~~~  377 (465)
T 2qga_B          330 TSRLQRDLSDSTVLRN-IGSSLAYCLIAYKSVLKGLNKIDIDRRNLEEE  377 (465)
T ss_dssp             CCSTTBCTHHHHHHTT-HHHHHHHHHHHHHHHHHHHHHEEECHHHHHHH
T ss_pred             chhhhhhhhhhhhhhh-HHHHHHHHHHHHHHHHHHHccCEECHHHHHHH
Confidence            7899999999987666 78999999999999999999999999999984

>2ptr_A Adenylosuccinate lyase; mutant-substrate complex; HET: 2SA; 1.85A {Escherichia coli} PDB: 2ptq_A* 2pts_A 3gzh_A

Probab=99.97  E-value=2.3e-30  Score=275.02  Aligned_cols=190  Identities=14%  Similarity=0.063  Sum_probs=148.8

Q ss_pred             hhhhhHhccHHHHHHHHHHHhhhcCCCceeecccCcccccchhhhhhhhhhhhHHHHHHcCCCCCCCccc-ccccccHHH
Q psy14319          2 KFYKYVLGDGDKVKALDRLVTKKAGFNSSHIITGQTYSRKVDVIVTGVLSSLGASIHKKAGFNSSHIITG-QTYSRKVDV   80 (486)
Q Consensus         2 ~~~~~~~~d~~r~~~~~~~~~~~~g~~~~~a~~g~~~~r~~d~~~~Gt~a~~~~~~a~~LGf~~~~~~~~-av~~RD~~~   80 (486)
                      +|+++|.||.+|++++. ..++..|-.|.++-+...|+ .+|+      ..+.+.+++.|||.  .++++ ++++||+++
T Consensus       186 ~~~~~l~r~~~rL~~~~-~~~~~~GAvGT~~~~~~~~~-~~~~------~~v~~~~~~~LGl~--~n~~~~~~~~rD~~~  255 (462)
T 2ptr_A          186 NVAYRMERQYRQLNQVE-ILGKINGAVGNYNAHIAAYP-EVDW------HQFSEEFVTSLGIQ--WNPYTTQIEPHDYIA  255 (462)
T ss_dssp             HHHHHHHHHHHHHHHCC-CEECCCCTTSSCHHHHHHCT-TSCH------HHHHHHHHHHTTCE--ECCCCSSSCCCHHHH
T ss_pred             HHHHHHHHHHHHHHHHH-HHhccCchhcchhhcccccC-cccH------HHHHHHHHHHhCCC--CCchhhhhcCCHHHH
Confidence            69999999999998876 22111111011111111343 1111      11234777889994  45677 799999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhccccccccccCCCCCccCCCCCCchHHHHHHHHHHHHHHHHHHHHHhhcc-cccc
Q psy14319         81 IVTGVLSSLGASIHKLATDLRLLAHMKEIEEPFESTQIGSSAMAYKRNPMRSERLCSLARFLMSLHQNSLATAST-QWME  159 (486)
Q Consensus        81 e~~~~la~la~~LsRlA~DL~l~ss~~el~e~~~~~~~GSSiMPqKrNP~~~E~ir~~a~~v~g~~~~~l~~~~~-~~~e  159 (486)
                      |++++++.++++|+|||+||++|++-.++.|+++++++|||||||||||+.+|+++++|+++.|+...++. +++ ++||
T Consensus       256 e~~~~l~~~a~~L~kia~Dl~ll~s~~~~~E~~~~~~~GSSiMP~K~NP~~~E~i~~~a~~v~g~~~~~~~-~~~~~~~e  334 (462)
T 2ptr_A          256 ELFDCVARFNTILIDFDRDVWGYIALNHFKQKTIAGEIGSSTMPHKVNPIDFENSEGNLGLSNAVLQHLAS-KLPVSRWQ  334 (462)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHTTSEEECCCTTCCSCSSCTTCCCCHHHHHHHHHHHHHHHHHHHHHH-HTTCCSTT
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhCCcchhccCCCCCCcCCCCCCCCCcHHHHHHHHHHHHHHHHHHHHHH-hhhhhccc
Confidence            99999999999999999999999972225556778899999999999999999999999999999886544 555 7999


Q ss_pred             CCCchhhHhhhchHHHHHHHHHHHHHHHHhhhccccCHHhhhhh
Q psy14319        160 RTLDDSANRRLTLSESFLTTDCLLITLQNVLEGLVVYPKETYSI  203 (486)
Q Consensus       160 rDl~~~~~~~~~l~~a~~~~~~~l~~~~~vl~~l~vn~erm~~~  203 (486)
                      ||+++|+.++. +++++..+..++..+..++++|+||++||++.
T Consensus       335 rd~~~~~~~~~-l~~~~~~~~~~l~~~~~~l~gl~vn~e~m~~~  377 (462)
T 2ptr_A          335 RDLTDSTVLRN-LGVGIGYALIAYQSTLKGVSKLEVNRDHLLDE  377 (462)
T ss_dssp             CCTHHHHHGGG-HHHHHHHHHHHHHHHHHHHHHEEECHHHHHHH
T ss_pred             ccccccHHHHH-HHHHHHHHHHHHHHHHHHHCcCEECHHHHHHH
Confidence            99999998776 78999999999999999999999999999984

>4adm_A Fumarase C, fumarate hydratase class II; lyase, tricarboxylic acid cycle; HET: SRT; 1.65A {Mycobacterium tuberculosis} PDB: 4adl_A* 3no9_A 4apa_A 4apb_A 3qbp_A 3rd8_A 3rrp_A

Probab=99.96  E-value=1.2e-29  Score=270.28  Aligned_cols=191  Identities=18%  Similarity=0.166  Sum_probs=144.3

Q ss_pred             hhhhhHhccHHHHHHHHHHHhhhcCCCceeecccCcccccchhhhhhhhhhhhHHHHHHcCC-C-CC-CCcccccccccH
Q psy14319          2 KFYKYVLGDGDKVKALDRLVTKKAGFNSSHIITGQTYSRKVDVIVTGVLSSLGASIHKKAGF-N-SS-HIITGQTYSRKV   78 (486)
Q Consensus         2 ~~~~~~~~d~~r~~~~~~~~~~~~g~~~~~a~~g~~~~r~~d~~~~Gt~a~~~~~~a~~LGf-~-~~-~~~~~av~~RD~   78 (486)
                      +|+++|.||.+|++++.++++.. ++|| +|+ |+.++  +|+..   -....++++++||| . .+ .|+.+++++||+
T Consensus       224 ~~a~~l~rd~~RL~~~~~~l~~~-~LGg-tAv-GT~~~--~~~~~---~~~v~~~la~~lG~~~~~~~~n~~~a~~~rD~  295 (495)
T 4adm_A          224 GYARQIEAGIERVRACLPRLGEL-AIGG-TAV-GTGLN--APDDF---GVRVVAVLVAQTGLSELRTAANSFEAQAARDG  295 (495)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHTEE-CTTC-TTT-SSCTT--SCTTH---HHHHHHHHHHHHCCTTCEECSCTTHHHHCCHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHhcC-CCCC-eee-cCCcc--CChhH---HHHHHHHHHHHhCCCCCccccchHHHHhccHH
Confidence            79999999999999999999853 4433 455 77663  43210   01123479999999 3 33 356799999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHh-----ccccccccccCCCCCccCCCCCCchHHHHHHHHHHHHHHHHHHHHHhh
Q psy14319         79 DVIVTGVLSSLGASIHKLATDLRLLAH-----MKEIEEPFESTQIGSSAMAYKRNPMRSERLCSLARFLMSLHQNSLATA  153 (486)
Q Consensus        79 ~~e~~~~la~la~~LsRlA~DL~l~ss-----~~el~e~~~~~~~GSSiMPqKrNP~~~E~ir~~a~~v~g~~~~~l~~~  153 (486)
                      ++|++++++.++++|+|||+||++|++     |+||.+|.  .++|||||||||||+.+|.++++|+++.|+..++.+.+
T Consensus       296 ~~e~~~~L~~la~~L~Kia~DlrllsSgpr~e~gei~lp~--~q~GSSiMP~K~NPv~~E~i~~~a~~v~G~~~~i~~a~  373 (495)
T 4adm_A          296 LVEASGALRTIAVSLTKIANDIRWMGSGPLTGLAEIQLPD--LQPGSSIMPGKVNPVLPEAVTQVAAQVIGNDAAIAWGG  373 (495)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHTCBSTTSCCCEECCC--C---------CCCCHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCcceEECCC--CCCCCCCCCCCCCcHHHHHHHHHHHHHHhHHHHHHHHH
Confidence            999999999999999999999999985     99999873  68999999999999999999999999999998876665


Q ss_pred             ccccccCCCchhhHhhhchHHHHHHHHHHHHHH-HHhhhccccCHHhhhhh
Q psy14319        154 STQWMERTLDDSANRRLTLSESFLTTDCLLITL-QNVLEGLVVYPKETYSI  203 (486)
Q Consensus       154 ~~~~~erDl~~~~~~~~~l~~a~~~~~~~l~~~-~~vl~~l~vn~erm~~~  203 (486)
                      ..++++.+...+... ..+++++.++..++..+ ..|+++|+||++||++.
T Consensus       374 ~~g~~eln~~~p~i~-~~l~~s~~~l~~~l~~~~~~~l~gl~vn~erm~~~  423 (495)
T 4adm_A          374 ANGAFELNVYIPMMA-RNILESFKLLTNVSRLFAQRCIAGLTANVEHLRRL  423 (495)
T ss_dssp             HTCBTTBCCCHHHHH-HHHHHHHHHHHHHHHHHHHHTGGGCEECHHHHHHH
T ss_pred             HcChHHhhhhHHHHH-HHHHHHHHHHHHHHHHHHHHHHccCEECHHHHHHH
Confidence            556677665444322 23567777777777776 89999999999999984

>2ptr_A Adenylosuccinate lyase; mutant-substrate complex; HET: 2SA; 1.85A {Escherichia coli} PDB: 2ptq_A* 2pts_A 3gzh_A

Probab=99.96  E-value=1.9e-29  Score=267.99  Aligned_cols=206  Identities=15%  Similarity=0.069  Sum_probs=160.9

Q ss_pred             cCCCCCCcccccccccCCCCCCCcHHHHHHHHHHHcCCCCCccccc-cccCccHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy14319        205 IIPDNRLSSHHTTKRSGRPGDGDKVKALDRLVTKKAGFTSSHIITG-QTYSRKVDVIVTGVLSSLGASIHKLATDLRLLA  283 (486)
Q Consensus       205 ~~~~~~g~~~~~~~~~~~~~~g~~~~~i~~~lA~~LGf~~a~~~~~-~~~~rd~~~e~~~~l~~~~~~l~rla~Dl~l~s  283 (486)
                      .+.|++||..+.  ...|.  +.+.+.+.+.+++.|||..  |..+ ++++||+++|++++++.++++|+|||+||++|+
T Consensus       206 ~~~GAvGT~~~~--~~~~~--~~~~~~v~~~~~~~LGl~~--n~~~~~~~~rD~~~e~~~~l~~~a~~L~kia~Dl~ll~  279 (462)
T 2ptr_A          206 KINGAVGNYNAH--IAAYP--EVDWHQFSEEFVTSLGIQW--NPYTTQIEPHDYIAELFDCVARFNTILIDFDRDVWGYI  279 (462)
T ss_dssp             CCCCTTSSCHHH--HHHCT--TSCHHHHHHHHHHHTTCEE--CCCCSSSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             ccCchhcchhhc--ccccC--cccHHHHHHHHHHHhCCCC--CchhhhhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            366777774310  01111  1234668888888899953  4555 799999999999999999999999999999999


Q ss_pred             hhhhccccccCCCCcCcCCCCCCCchHHHHHHHHHHHHHHHhHHHHHHhhhhHhhhcccccCCCCCCccccchhhhhhcc
Q psy14319        284 HMKEIEEPFESTQIGSSAMAYKRNPMRSERLCSLARFLMSLHQNSLATASTQWMERTLDDSANRFPTKSVFSCVTQVKQH  363 (486)
Q Consensus       284 s~~el~~~~~~~~~GSSiMPqKrNP~~~E~~~~~a~~~~g~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~  363 (486)
                      |-.++.|+++++++|||||||||||+.+|.++++|++++|+...++......++|||+.+|.                  
T Consensus       280 s~~~~~E~~~~~~~GSSiMP~K~NP~~~E~i~~~a~~v~g~~~~~~~~~~~~~~erd~~~~~------------------  341 (462)
T 2ptr_A          280 ALNHFKQKTIAGEIGSSTMPHKVNPIDFENSEGNLGLSNAVLQHLASKLPVSRWQRDLTDST------------------  341 (462)
T ss_dssp             HTTSEEECCCTTCCSCSSCTTCCCCHHHHHHHHHHHHHHHHHHHHHHHTTCCSTTCCTHHHH------------------
T ss_pred             CCcchhccCCCCCCcCCCCCCCCCcHHHHHHHHHHHHHHHHHHHHHHhhhhhcccccccccH------------------
Confidence            83336678899999999999999999999999999999999988877654467777664321                  


Q ss_pred             CCcchhhhhhccCCCCccccccCCCCCCCccccCCchhHhhhhhhcccchHHHHHHHHHHHHHHHhchhCCeeCHHHHHH
Q psy14319        364 GKENDLVDRIRADPYFAPILNQMPTLLDPKSFYGRAPEQQRLSAKGIHTLSESFLTTDCLLITLQNVLEGLVVYPKVIQR  443 (486)
Q Consensus       364 g~~~d~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~q~~~~~~~~~~l~~~~~~~~~~l~~~~~~l~~l~v~~~~m~~  443 (486)
                                                                  ..| .+.+++..+..++..+..++++|+||++||++
T Consensus       342 --------------------------------------------~~~-~l~~~~~~~~~~l~~~~~~l~gl~vn~e~m~~  376 (462)
T 2ptr_A          342 --------------------------------------------VLR-NLGVGIGYALIAYQSTLKGVSKLEVNRDHLLD  376 (462)
T ss_dssp             --------------------------------------------HGG-GHHHHHHHHHHHHHHHHHHHHHEEECHHHHHH
T ss_pred             --------------------------------------------HHH-HHHHHHHHHHHHHHHHHHHHCcCEECHHHHHH
Confidence                                                        012 36788888888888888999999999999999


Q ss_pred             HHhccCChhHHHHHHHHHHHcCCChHHHHHHHHHHHHHh
Q psy14319        444 HIDQELPFMATENIIMAMVKAGGDRQVCHEKIRVLSHQA  482 (486)
Q Consensus       444 ~l~~~~~~~~a~~~~~~L~~~g~~fr~Ah~~v~~~~~~a  482 (486)
                      +++.+.+ ++||.+.+.|++.|.+  +||++|+++++.+
T Consensus       377 ~l~~~~~-~~te~~~~~l~~~G~~--~A~~iv~~~~~~~  412 (462)
T 2ptr_A          377 ELDHNWE-VLAEPIQTVMRRYGIE--KPYEKLKELTRGK  412 (462)
T ss_dssp             HHTTCGG-GGHHHHHHHHHHTTCS--SHHHHHHHC----
T ss_pred             HHHcCCc-hHHHHHHHHHHhhChH--HHHHHHHHHHHHH
Confidence            9999887 4577777777776664  9999999999854

>3ocf_A Fumarate lyase:delta crystallin; fumarase, brucellosis, orchitis, epididymiti mastitis, dehydration of fumarate to malate, KREB'S cycle; 2.10A {Brucella melitensis} PDB: 3oce_A

Probab=99.96  E-value=1.5e-29  Score=268.51  Aligned_cols=191  Identities=16%  Similarity=0.209  Sum_probs=145.2

Q ss_pred             hhhhhHhccHHHHHHHHHHHhhhcCCCceeecccCcccccchhhhhhhhhhhhHHHHHHcCCCCC--CCcccccccccHH
Q psy14319          2 KFYKYVLGDGDKVKALDRLVTKKAGFNSSHIITGQTYSRKVDVIVTGVLSSLGASIHKKAGFNSS--HIITGQTYSRKVD   79 (486)
Q Consensus         2 ~~~~~~~~d~~r~~~~~~~~~~~~g~~~~~a~~g~~~~r~~d~~~~Gt~a~~~~~~a~~LGf~~~--~~~~~av~~RD~~   79 (486)
                      +|+++|.||.+|++++.+++.. +++|| +|+ |+.++  +|+.   .-....++++++|||..+  .+..+++++||++
T Consensus       223 ~~a~~l~rd~~RL~~~~~~l~~-~~lGg-tAv-GTg~~--~~~~---~~~~v~~~la~~lGl~~~~~~n~~~a~~~rD~~  294 (478)
T 3ocf_A          223 AFAATLREDTARLEEVAALFRE-VNLGG-TAI-GTRIN--ASHA---YAEQAIVELSQISGIELKATGNLVEASWDTGAF  294 (478)
T ss_dssp             HHHHHHHHHHHHHHHHHHGGGE-ECTTC---------------C---HHHHHHHHHHHHHTSCCEECSCHHHHTTCCHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHhH-hCCCC-eee-CCCcC--CChh---HHHHHHHHHHHhcCCCCccCCChhhhhcccHHH
Confidence            6999999999999999999985 34434 455 77663  4421   111223588999999853  4567999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHh-----ccccccccccCCCCCccCCCCCCchHHHHHHHHHHHHHHHHHHHHHhhc
Q psy14319         80 VIVTGVLSSLGASIHKLATDLRLLAH-----MKEIEEPFESTQIGSSAMAYKRNPMRSERLCSLARFLMSLHQNSLATAS  154 (486)
Q Consensus        80 ~e~~~~la~la~~LsRlA~DL~l~ss-----~~el~e~~~~~~~GSSiMPqKrNP~~~E~ir~~a~~v~g~~~~~l~~~~  154 (486)
                      +|++++++.++++|+|||+||++|+|     |+||.+|  +.++|||||||||||+.+|.++++|++|.|+..++.+.+.
T Consensus       295 ~e~~~~L~~la~~L~Kia~DlrllsSgpr~g~gEi~lp--~~q~GSSiMP~K~NPv~~E~i~~~a~~V~G~~~~i~~a~~  372 (478)
T 3ocf_A          295 VTFSGILRRIAVKLSKIANDLRLLSSGPRSGLGEIRLP--AVQPGSSIMPGKVNPVIPESVNQVCYQVIGNDLTVTMAAE  372 (478)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHTCBSSSSCCCEECC--CCSCCBTTBTTCCCCHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhcCCCCceeEEECC--CCCCcCCCCCcccCcHHHHHHHHHHHHHHhHHHHHHHHHh
Confidence            99999999999999999999999994     9999987  4789999999999999999999999999999988766665


Q ss_pred             cccccCCCchhhHhhhchHHHHHHHHHHHHH-HHHhhhccccCHHhhhhh
Q psy14319        155 TQWMERTLDDSANRRLTLSESFLTTDCLLIT-LQNVLEGLVVYPKETYSI  203 (486)
Q Consensus       155 ~~~~erDl~~~~~~~~~l~~a~~~~~~~l~~-~~~vl~~l~vn~erm~~~  203 (486)
                      .++++.+...+...+ .+++.+.++..++.. ...|+++|+||++||++.
T Consensus       373 ~g~leln~~~p~i~~-~l~~s~~ll~~~~~~~~~~~v~gl~vn~erm~~~  421 (478)
T 3ocf_A          373 SGQLQLNAFEPLIVY-NILSSMRLLGRAMTNLAERCVDGIEANVERCRAG  421 (478)
T ss_dssp             TCBTTBCTTHHHHHH-HHHHHHHHHHHHHHHHHHHTGGGCEECHHHHHHH
T ss_pred             cCcchhcccchhHHH-HHHHHHHHHHHHHHHHHHHhhCCCEECHHHHHHH
Confidence            666666554443322 355666665555554 466899999999999984

>2qga_B Adenylosuccinate lyase; malaria, PV003765, SGC, structural G consortium; HET: AMP; 2.01A {Plasmodium vivax} PDB: 2hvg_A

Probab=99.96  E-value=1.2e-29  Score=269.73  Aligned_cols=183  Identities=16%  Similarity=0.144  Sum_probs=149.7

Q ss_pred             HHHHHHH-HHcCCCCCccccccccCccHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhccccccCCCCcCcCCCCCCCch
Q psy14319        231 ALDRLVT-KKAGFTSSHIITGQTYSRKVDVIVTGVLSSLGASIHKLATDLRLLAHMKEIEEPFESTQIGSSAMAYKRNPM  309 (486)
Q Consensus       231 ~i~~~lA-~~LGf~~a~~~~~~~~~rd~~~e~~~~l~~~~~~l~rla~Dl~l~ss~~el~~~~~~~~~GSSiMPqKrNP~  309 (486)
                      .+.+.++ +.|||..+ ...+++++||+++|++++++.++++|+|||+||++|++.+++.++++++++|||||||||||+
T Consensus       227 ~~~~~~~~~~LGl~~~-~~~~~~~~rD~~~e~~~~l~~~a~~L~kia~Di~ll~s~~~~~e~~~~~~~GSSiMP~K~NP~  305 (465)
T 2qga_B          227 NTIGLFLKKHFNLTYS-IYCTQIQDHDYICELCDGLARANGTLIDLCVDIWLYISNNLLKLKVKEKEVGSSTMPHKVNPI  305 (465)
T ss_dssp             HHHHHHHHHHHCCEEC-CCCSSSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSEEEC-------CCSCTTCCCCH
T ss_pred             HHHHHHHHHHhCCCCC-CCccchhccHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCcceeeeCCCCCCCCCCCCCCCChH
Confidence            4555554 55999865 356889999999999999999999999999999999996667888999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHhHHHHHHhhhhHhhhcccccCCCCCCccccchhhhhhccCCcchhhhhhccCCCCccccccCCCC
Q psy14319        310 RSERLCSLARFLMSLHQNSLATASTQWMERTLDDSANRFPTKSVFSCVTQVKQHGKENDLVDRIRADPYFAPILNQMPTL  389 (486)
Q Consensus       310 ~~E~~~~~a~~~~g~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~g~~~d~~~~~~~~~~~~~~~~~~~~~  389 (486)
                      .+|.++++++.+.+....++......++|||+.+|..                                           
T Consensus       306 ~~e~~~g~~~~~~~~~~~~~~~l~~~~~erdl~~s~~-------------------------------------------  342 (465)
T 2qga_B          306 DFENAEGNLHIANAFFKLFSSKLPTSRLQRDLSDSTV-------------------------------------------  342 (465)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHTTCCSTTBCTHHHHH-------------------------------------------
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhhcchhhhhhhhhhhh-------------------------------------------
Confidence            9999999999999998887776555677777654311                                           


Q ss_pred             CCCccccCCchhHhhhhhhcccchHHHHHHHHHHHHHHHhchhCCeeCHHHHHHHHhccCChhHHHHHHHHHHHcCCChH
Q psy14319        390 LDPKSFYGRAPEQQRLSAKGIHTLSESFLTTDCLLITLQNVLEGLVVYPKVIQRHIDQELPFMATENIIMAMVKAGGDRQ  469 (486)
Q Consensus       390 ~~p~~~~~~~~~q~~~~~~~~~~l~~~~~~~~~~l~~~~~~l~~l~v~~~~m~~~l~~~~~~~~a~~~~~~L~~~g~~fr  469 (486)
                                         .| .++.++..+..++..+..++++|+||+++|+++++.++++ +||.++++|+++|  ++
T Consensus       343 -------------------~r-~l~~~~~~~~~~l~~~~~~l~~l~vn~~~m~~~l~~~~~~-~ae~v~~~L~~~G--~~  399 (465)
T 2qga_B          343 -------------------LR-NIGSSLAYCLIAYKSVLKGLNKIDIDRRNLEEELNQNWST-LAEPIQIVMKRHN--YV  399 (465)
T ss_dssp             -------------------HT-THHHHHHHHHHHHHHHHHHHHHEEECHHHHHHHHHTCGGG-GHHHHHHHHHHTT--CS
T ss_pred             -------------------hh-hHHHHHHHHHHHHHHHHHHHccCEECHHHHHHHHHcCCCh-HHHHHHHHHHHhC--hH
Confidence                               12 3677888888888888899999999999999999999884 4899999999985  49


Q ss_pred             HHHHHHHHHHH
Q psy14319        470 VCHEKIRVLSH  480 (486)
Q Consensus       470 ~Ah~~v~~~~~  480 (486)
                      +||++|+++++
T Consensus       400 ~A~~iv~~~~~  410 (465)
T 2qga_B          400 DAYEELKQFTR  410 (465)
T ss_dssp             CHHHHHHHHHT
T ss_pred             HHHHHHHHHHh
Confidence            99999999987

>3r6q_A Aspartase; aspartate ammonia lyase, lyase; 2.40A {Bacillus SP} SCOP: a.127.1.1 PDB: 1j3u_A 3r6v_A 3r6y_A

Probab=99.96  E-value=4.2e-29  Score=265.00  Aligned_cols=185  Identities=20%  Similarity=0.232  Sum_probs=146.7

Q ss_pred             CCCCcHHHHHHHHHHHcCCCCC--ccccccccCccHHHHHHHHHHHHHHHHHHHHHHHHHHhh-----hhhccccccCCC
Q psy14319        224 GDGDKVKALDRLVTKKAGFTSS--HIITGQTYSRKVDVIVTGVLSSLGASIHKLATDLRLLAH-----MKEIEEPFESTQ  296 (486)
Q Consensus       224 ~~g~~~~~i~~~lA~~LGf~~a--~~~~~~~~~rd~~~e~~~~l~~~~~~l~rla~Dl~l~ss-----~~el~~~~~~~~  296 (486)
                      .+...+..+.+.+++.|||..+  .|.++++++||+++|++++|+.++++|+|||+||++|+|     ||||.+|  ..+
T Consensus       238 ~~~~~~~~v~~~la~~lGl~~~~~~n~~~a~~~rD~~~e~~~~l~~la~~L~Kia~DlrllsS~pr~g~gei~lp--~~~  315 (468)
T 3r6q_A          238 ADPEYISIVTEHLAKFSGHPLRSAQHLVDATQNTDCYTEVSSALKVCMINMSKIANDLRLMASGPRAGLSEIVLP--ARQ  315 (468)
T ss_dssp             CCHHHHHHHHHHHHHHHCSCCEECSCHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCBSSSSCCCEECC--CCS
T ss_pred             CChHHHHHHHHHHHHHhCCCCccccchHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCeeEEECC--CCC
Confidence            3444467788889999999853  367789999999999999999999999999999999996     8999987  468


Q ss_pred             CcCcCCCCCCCchHHHHHHHHHHHHHHHhHHHHHHhhhhHhhhcccccCCCCCCccccchhhhhhccCCcchhhhhhccC
Q psy14319        297 IGSSAMAYKRNPMRSERLCSLARFLMSLHQNSLATASTQWMERTLDDSANRFPTKSVFSCVTQVKQHGKENDLVDRIRAD  376 (486)
Q Consensus       297 ~GSSiMPqKrNP~~~E~~~~~a~~~~g~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~g~~~d~~~~~~~~  376 (486)
                      +|||||||||||+.+|.++++|++++|++.+++.++..+++|++                                    
T Consensus       316 ~GSSiMP~K~NP~~~E~i~~~a~~v~G~~~~i~~a~~~g~~eln------------------------------------  359 (468)
T 3r6q_A          316 PGSSIMPGKVNPVMPEVMNQVAFQVFGNDLTITSASEAGQFELN------------------------------------  359 (468)
T ss_dssp             CCCTTSTTCCCCHHHHHHHHHHHHHHHHHHHHHHHHHTCBTTBC------------------------------------
T ss_pred             CCCCCCCCCCCcHHHHHHHHHHHHHHhHHHHHHHHHHcCchhhh------------------------------------
Confidence            99999999999999999999999999999998876543333321                                    


Q ss_pred             CCCccccccCCCCCCCccccCCchhHhhhhhhcccchHHHHHHHHHHHHHHH-hchhCCeeCHHHHHHHHhccCChhHHH
Q psy14319        377 PYFAPILNQMPTLLDPKSFYGRAPEQQRLSAKGIHTLSESFLTTDCLLITLQ-NVLEGLVVYPKVIQRHIDQELPFMATE  455 (486)
Q Consensus       377 ~~~~~~~~~~~~~~~p~~~~~~~~~q~~~~~~~~~~l~~~~~~~~~~l~~~~-~~l~~l~v~~~~m~~~l~~~~~~~~a~  455 (486)
                                  ++.|.               .|..+++++.++..++..+. .|++||+||++||+++++.+.++  ++
T Consensus       360 ------------~~~p~---------------i~~~l~~s~~~l~~~l~~~~~~~i~gl~vn~erm~~~l~~s~~l--~t  410 (468)
T 3r6q_A          360 ------------VMEPV---------------LFFNLIQSISIMTNVFKSFTENCLKGIKANEERMKEYVEKSIGI--IT  410 (468)
T ss_dssp             ------------TTHHH---------------HHHHHHHHHHHHHHHHHHHHHHTGGGCEECHHHHHHHHHTCSTT--HH
T ss_pred             ------------hhHHH---------------HHHHHHHHHHHHHHHHHHHHHHHHccCEECHHHHHHHHHcCCch--HH
Confidence                        11121               13467889999999999998 99999999999999999988664  44


Q ss_pred             HHHHHHHHcCCChHHHHHHHHHHHHHhhh
Q psy14319        456 NIIMAMVKAGGDRQVCHEKIRVLSHQAGA  484 (486)
Q Consensus       456 ~~~~~L~~~g~~fr~Ah~~v~~~~~~a~~  484 (486)
                      +|+..     +    +|+++++++++|.+
T Consensus       411 ~La~~-----l----gy~~a~~ia~~a~~  430 (468)
T 3r6q_A          411 AINPH-----V----GYETAAKLAREAYL  430 (468)
T ss_dssp             HHHHH-----H----HHHHHHHHHHHHHH
T ss_pred             hcchh-----h----HHHHHHHHHHHHHH
Confidence            44443     3    44444455555543

>3gtd_A Fumarase C, fumarate hydratase class II; structural genomics, ssgcid, lyase, tricarboxylic acid cycle; 2.40A {Rickettsia prowazekii}

Probab=99.96  E-value=3.2e-29  Score=265.63  Aligned_cols=185  Identities=20%  Similarity=0.172  Sum_probs=151.8

Q ss_pred             CCCcHHHHHHHHHHHcCCCCC--ccccccccCccHHHHHHHHHHHHHHHHHHHHHHHHHHhh-----hhhccccccCCCC
Q psy14319        225 DGDKVKALDRLVTKKAGFTSS--HIITGQTYSRKVDVIVTGVLSSLGASIHKLATDLRLLAH-----MKEIEEPFESTQI  297 (486)
Q Consensus       225 ~g~~~~~i~~~lA~~LGf~~a--~~~~~~~~~rd~~~e~~~~l~~~~~~l~rla~Dl~l~ss-----~~el~~~~~~~~~  297 (486)
                      +...+..+.+++++.|||+.+  .|.++++++||+++|++++|+.++++|+|||+||++|+|     ||||.+|  +.++
T Consensus       260 ~~~~~~~v~~~la~~lGl~~~~~~n~~da~~~rD~~~e~~~~L~~la~~L~Kia~DlrllsSgpr~g~gEi~lp--~~~~  337 (482)
T 3gtd_A          260 KIGFDIKFAQKVAEFTQQPFKTAPNKFESLAAHDALVEFSGTLNTIAVSLMKIANDIRLLGSGPRCGLGELHLP--ENEP  337 (482)
T ss_dssp             CTTHHHHHHHHHHHHHTSCCEECSCHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHTCCSSSSCCCEECC--CCSC
T ss_pred             CchhHHHHHHHHHHHhCCCCccccchhhhhcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCccCeeEEECC--CCCC
Confidence            344567889999999999852  367789999999999999999999999999999999996     8899976  5699


Q ss_pred             cCcCCCCCCCchHHHHHHHHHHHHHHHhHHHHHHhhhhHhhhcccccCCCCCCccccchhhhhhccCCcchhhhhhccCC
Q psy14319        298 GSSAMAYKRNPMRSERLCSLARFLMSLHQNSLATASTQWMERTLDDSANRFPTKSVFSCVTQVKQHGKENDLVDRIRADP  377 (486)
Q Consensus       298 GSSiMPqKrNP~~~E~~~~~a~~~~g~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~g~~~d~~~~~~~~~  377 (486)
                      |||||||||||+.+|.++++|++++|+++++...+..+++|++.                                    
T Consensus       338 GSSiMP~K~NPv~~E~i~~~a~~v~G~~~~i~~a~~~g~~eln~------------------------------------  381 (482)
T 3gtd_A          338 GSSIMPGKVNPTQVEALTMVCTQVMGNHVTVTIAGSNGHLELNV------------------------------------  381 (482)
T ss_dssp             CCSSSTTCCCCHHHHHHHHHHHHHHHHHHHHHHHHTCCBTTBCC------------------------------------
T ss_pred             CCCCCCCCCCcHHHHHHHHHHHHHHHHHHHHHHHHhcccchhcc------------------------------------
Confidence            99999999999999999999999999999988776555555432                                    


Q ss_pred             CCccccccCCCCCCCccccCCchhHhhhhhhcccchHHHHHHHHHHHHHHHhchhCCeeCHHHHHHHHhccCChhHHHHH
Q psy14319        378 YFAPILNQMPTLLDPKSFYGRAPEQQRLSAKGIHTLSESFLTTDCLLITLQNVLEGLVVYPKVIQRHIDQELPFMATENI  457 (486)
Q Consensus       378 ~~~~~~~~~~~~~~p~~~~~~~~~q~~~~~~~~~~l~~~~~~~~~~l~~~~~~l~~l~v~~~~m~~~l~~~~~~~~a~~~  457 (486)
                       |           +|..              .|..+++++.+++++..+...|++||+||++||+++++.+.  ++++.+
T Consensus       382 -~-----------~pl~--------------~~~~l~s~~ll~~~~~~~~~~~v~gl~vn~erm~~~l~~s~--~lvTaL  433 (482)
T 3gtd_A          382 -F-----------KPVI--------------IYNILQSIELLSDSVNSFVTHCVKGLEPNIARINTLRDKSL--MLVTVL  433 (482)
T ss_dssp             -C-----------HHHH--------------HHHHHHHHHHHHHHHHHHHHHTTTTCEECHHHHHHHHHHCG--GGHHHH
T ss_pred             -c-----------chHH--------------HHHHHHHHHHHHHHHHHHHHHHHccCEECHHHHHHHHhhhh--HHHHHh
Confidence             1           2221              25689999999999999999999999999999999998764  455544


Q ss_pred             HHHHHHcCCChHHHHHHHHHHHH
Q psy14319        458 IMAMVKAGGDRQVCHEKIRVLSH  480 (486)
Q Consensus       458 ~~~L~~~g~~fr~Ah~~v~~~~~  480 (486)
                          .+. ++++.|+++++++..
T Consensus       434 ----a~~-iGy~~a~~ia~~A~~  451 (482)
T 3gtd_A          434 ----NPH-IGYDNAAKIAKEAHK  451 (482)
T ss_dssp             ----HHH-HCHHHHHHHHHHHHH
T ss_pred             ----hhH-HHHHHHHHHHHHHHH
Confidence                444 456777776665543

>3bhg_A Adenylosuccinate lyase; structural G PSI-2, protein structure initiative, midwest center for STR genomics, MCSG; 1.90A {Legionella pneumophila subsp}

Probab=99.96  E-value=1.7e-29  Score=268.09  Aligned_cols=185  Identities=15%  Similarity=0.126  Sum_probs=146.4

Q ss_pred             hhhhhHhccHHHHHHHHHHHhhhcCCCceeecccC------cccccchhhhhhhhhhhhHHHHHHcCCCCCCCccc-ccc
Q psy14319          2 KFYKYVLGDGDKVKALDRLVTKKAGFNSSHIITGQ------TYSRKVDVIVTGVLSSLGASIHKKAGFNSSHIITG-QTY   74 (486)
Q Consensus         2 ~~~~~~~~d~~r~~~~~~~~~~~~g~~~~~a~~g~------~~~r~~d~~~~Gt~a~~~~~~a~~LGf~~~~~~~~-av~   74 (486)
                      +|+++|.||.+|++++. .    +|. +++|+ |+      +|| .+|+      ..+.+++++.|||..+  +++ +++
T Consensus       189 ~~~~~l~r~~~rL~~~~-~----~~~-~~GAv-GT~~a~~~~~~-~~~~------~~~~~~~~~~LGl~~~--~~~~~~~  252 (459)
T 3bhg_A          189 NFVARLKRPQQQLAEVL-I----PAK-FNGAV-GNYNAHVAAYP-EVDW------RKHCANFVTSLGLSFN--AYTTQIE  252 (459)
T ss_dssp             HHHHHHHHHHHHHHHCC-C----EEC-CCCSS-SSCHHHHHHCT-TSCH------HHHHHHHHHHTTCEEC--SSCSSSC
T ss_pred             HHHHHHHHHHHHHHHHH-H----hhc-ccccc-ccccccccccC-cccH------HHHHHHHHHHhCCCCC--ccccchh
Confidence            69999999999999877 2    232 24566 66      333 1222      1245678888999743  344 899


Q ss_pred             cccHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccccccCCCCCccCCCCCCchHHHHHHHHHHHHHHHHHHHHHhhc
Q psy14319         75 SRKVDVIVTGVLSSLGASIHKLATDLRLLAHMKEIEEPFESTQIGSSAMAYKRNPMRSERLCSLARFLMSLHQNSLATAS  154 (486)
Q Consensus        75 ~RD~~~e~~~~la~la~~LsRlA~DL~l~ss~~el~e~~~~~~~GSSiMPqKrNP~~~E~ir~~a~~v~g~~~~~l~~~~  154 (486)
                      +||+++|++++++.++++|+|||+||++|++-+++.++++++++|||||||||||+.+|+++++++.+.+....++....
T Consensus       253 ~rD~~~e~~~~l~~~a~~L~kia~Di~ll~s~~~~~e~~~~~~~GSSiMP~K~NP~~~e~~~g~~~l~~~~~~~~~~~l~  332 (459)
T 3bhg_A          253 PHDGIAEVSQIMVRINNILLDYTQDIWSYISLGYFKQKTIAEEVGSSTMPHKVNPIDFENAEGNLGLSNALFIHFANKLT  332 (459)
T ss_dssp             CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSEEECC------CCSSCCCCCTHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred             cCHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCcceehccCCCCCCCCCCCCCcChHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            99999999999999999999999999999974445667778899999999999999999999999999998775444333


Q ss_pred             cccccCCCchhhHhhhchHHHHHHHHHHHHHHHHhhhccccCHHhhhhh
Q psy14319        155 TQWMERTLDDSANRRLTLSESFLTTDCLLITLQNVLEGLVVYPKETYSI  203 (486)
Q Consensus       155 ~~~~erDl~~~~~~~~~l~~a~~~~~~~l~~~~~vl~~l~vn~erm~~~  203 (486)
                      +++||||+++|+.+|. +++++..+..++..+..++++|+||+++|++.
T Consensus       333 ~~~~~rdl~~s~~~r~-l~~~~~~~~~~l~~~~~~l~gl~vn~e~m~~~  380 (459)
T 3bhg_A          333 QSRMQRDLSDSTVLRN-LGVAFSYSLIAYHSVAKGNDKLQINKSALQKD  380 (459)
T ss_dssp             CCSTTCCTHHHHHHTT-HHHHHHHHHHHHHHHHHHHTTEEECHHHHHHH
T ss_pred             HHHhcccchhhhhhhh-HHHHHHHHHHHHHHHHHHHCcCEECHHHHHHH
Confidence            6899999999987766 89999999999999999999999999999984

>4hgv_A Fumarase C, fumarate hydratase class II; nysgrc, PSI-biology, structural genomics, NEW YORK structura genomics research consortium; 2.09A {Sinorhizobium meliloti}

Probab=99.96  E-value=3.9e-29  Score=266.71  Aligned_cols=191  Identities=17%  Similarity=0.156  Sum_probs=155.7

Q ss_pred             hhhhhHhccHHHHHHHHHHHhhhcCCCceeecccCcccccchhhhhhhhhhhhHHHHHHcCCC--CCCCcccccccccHH
Q psy14319          2 KFYKYVLGDGDKVKALDRLVTKKAGFNSSHIITGQTYSRKVDVIVTGVLSSLGASIHKKAGFN--SSHIITGQTYSRKVD   79 (486)
Q Consensus         2 ~~~~~~~~d~~r~~~~~~~~~~~~g~~~~~a~~g~~~~r~~d~~~~Gt~a~~~~~~a~~LGf~--~~~~~~~av~~RD~~   79 (486)
                      +|++.|.||.+|++++.+++.. ++++|...-+|...+...+.       ...+++++.+||.  ...+..+++++||++
T Consensus       235 ~~~~~l~r~~~RL~~~~~~~~~-~~lGgtAvGtg~~~~~~~~~-------~v~~~la~~~gl~f~~a~n~~~~~~~rD~~  306 (495)
T 4hgv_A          235 GYAAQVASSIKRIEMTLPGLCE-LAQGGTAVGTGLNAPVGFAE-------KVAEEIAAITGIGFTSAPNKFEALAAHDSM  306 (495)
T ss_dssp             HHHHHHHHHHHHHHHTHHHHTE-ECTTCTTTSSCTTSCTTHHH-------HHHHHHHHHHTSCCEECSCHHHHHHCCHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHh-hcCCcchhhhcccCchhHHH-------HHHHHHHHHhCCCccccCCHHHHHhhhHHH
Confidence            6999999999999999998874 34434333366666522221       1124677776665  445677899999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHh-----ccccccccccCCCCCccCCCCCCchHHHHHHHHHHHHHHHHHHHHHhhc
Q psy14319         80 VIVTGVLSSLGASIHKLATDLRLLAH-----MKEIEEPFESTQIGSSAMAYKRNPMRSERLCSLARFLMSLHQNSLATAS  154 (486)
Q Consensus        80 ~e~~~~la~la~~LsRlA~DL~l~ss-----~~el~e~~~~~~~GSSiMPqKrNP~~~E~ir~~a~~v~g~~~~~l~~~~  154 (486)
                      ++++++++.++++|+|||+||++|++     |+|+..  +++++|||||||||||+.+|.++++|+++.|+...+.+.+.
T Consensus       307 ~e~~~~L~~la~~L~Kia~Dirll~S~~~~g~~Ei~~--p~~q~GSSiMP~K~NPv~~E~i~~~a~~v~G~~~~i~~a~~  384 (495)
T 4hgv_A          307 VFSHGAINATAAALFKIANDIRFLGSGPRSGLGELSL--PENEPGSSIMPGKVNPTQCEALTQVCVQVFGNHAALTFAGS  384 (495)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHTCCSSSSCCCEEC--CCCSCCC-----CCCCHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhcCcceeeeEEec--CcCCcccccCccccChHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence            99999999999999999999999985     555554  56899999999999999999999999999999988777778


Q ss_pred             cccccCCCchhhHhhhchHHHHHHHHHHHHHHHHhhhccccCHHhhhh
Q psy14319        155 TQWMERTLDDSANRRLTLSESFLTTDCLLITLQNVLEGLVVYPKETYS  202 (486)
Q Consensus       155 ~~~~erDl~~~~~~~~~l~~a~~~~~~~l~~~~~vl~~l~vn~erm~~  202 (486)
                      .+++|+|...|..+|..++++..+++.++.++..|+++|+||++||++
T Consensus       385 ~~~~e~n~~~~~~~~~ll~s~~~l~~~~~~~~~~~i~gl~vn~erm~~  432 (495)
T 4hgv_A          385 QGHFELNVYNPLMAYNFLQSVQLLADAAISFTDNCVVGIEAREDNIKA  432 (495)
T ss_dssp             TCBTTBCCCHHHHHHHHHHHHHHHHHHHHHHHHHTGGGCEECHHHHHH
T ss_pred             cccccccccchHHHHHHHHHHHHHHHHHHHHHHHHhccCEECHHHHHH
Confidence            889999999999999999999999999999999999999999999998

>3bhg_A Adenylosuccinate lyase; structural G PSI-2, protein structure initiative, midwest center for STR genomics, MCSG; 1.90A {Legionella pneumophila subsp}

Probab=99.96  E-value=9.2e-29  Score=262.56  Aligned_cols=185  Identities=15%  Similarity=0.136  Sum_probs=150.4

Q ss_pred             HHHHHHHHHHHcCCCCCccccccccCccHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhccccccCCCCcCcCCCCCCCc
Q psy14319        229 VKALDRLVTKKAGFTSSHIITGQTYSRKVDVIVTGVLSSLGASIHKLATDLRLLAHMKEIEEPFESTQIGSSAMAYKRNP  308 (486)
Q Consensus       229 ~~~i~~~lA~~LGf~~a~~~~~~~~~rd~~~e~~~~l~~~~~~l~rla~Dl~l~ss~~el~~~~~~~~~GSSiMPqKrNP  308 (486)
                      .+.+.+.+++.|||... ...+++++||+++|++++++.++++|+|||+||++|++.+++.++++++++|||||||||||
T Consensus       229 ~~~~~~~~~~~LGl~~~-~~~~~~~~rD~~~e~~~~l~~~a~~L~kia~Di~ll~s~~~~~e~~~~~~~GSSiMP~K~NP  307 (459)
T 3bhg_A          229 WRKHCANFVTSLGLSFN-AYTTQIEPHDGIAEVSQIMVRINNILLDYTQDIWSYISLGYFKQKTIAEEVGSSTMPHKVNP  307 (459)
T ss_dssp             HHHHHHHHHHHTTCEEC-SSCSSSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSEEECC------CCSSCCCCCT
T ss_pred             HHHHHHHHHHHhCCCCC-ccccchhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCcceehccCCCCCCCCCCCCCcCh
Confidence            46688888888999753 34458999999999999999999999999999999999555778899999999999999999


Q ss_pred             hHHHHHHHHHHHHHHHhHHHHHHhhhhHhhhcccccCCCCCCccccchhhhhhccCCcchhhhhhccCCCCccccccCCC
Q psy14319        309 MRSERLCSLARFLMSLHQNSLATASTQWMERTLDDSANRFPTKSVFSCVTQVKQHGKENDLVDRIRADPYFAPILNQMPT  388 (486)
Q Consensus       309 ~~~E~~~~~a~~~~g~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~g~~~d~~~~~~~~~~~~~~~~~~~~  388 (486)
                      +.+|.++++++.+.+....++......+++||+.+|.                                           
T Consensus       308 ~~~e~~~g~~~l~~~~~~~~~~~l~~~~~~rdl~~s~-------------------------------------------  344 (459)
T 3bhg_A          308 IDFENAEGNLGLSNALFIHFANKLTQSRMQRDLSDST-------------------------------------------  344 (459)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHTTCCSTTCCTHHHH-------------------------------------------
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccchhhh-------------------------------------------
Confidence            9999999999999998887766544456777664321                                           


Q ss_pred             CCCCccccCCchhHhhhhhhcccchHHHHHHHHHHHHHHHhchhCCeeCHHHHHHHHhccCChhHHHHHHHHHHHcCCCh
Q psy14319        389 LLDPKSFYGRAPEQQRLSAKGIHTLSESFLTTDCLLITLQNVLEGLVVYPKVIQRHIDQELPFMATENIIMAMVKAGGDR  468 (486)
Q Consensus       389 ~~~p~~~~~~~~~q~~~~~~~~~~l~~~~~~~~~~l~~~~~~l~~l~v~~~~m~~~l~~~~~~~~a~~~~~~L~~~g~~f  468 (486)
                                         ..| .++.++..+..++..+..++++|+||+++|+++++.+++ ++||.+.+.|+++|.  
T Consensus       345 -------------------~~r-~l~~~~~~~~~~l~~~~~~l~gl~vn~e~m~~~l~~~~~-~~te~~~~~L~~~G~--  401 (459)
T 3bhg_A          345 -------------------VLR-NLGVAFSYSLIAYHSVAKGNDKLQINKSALQKDLSENWE-VLAEAIQTVMRRYNE--  401 (459)
T ss_dssp             -------------------HHT-THHHHHHHHHHHHHHHHHHHTTEEECHHHHHHHHHTCGG-GGHHHHHHHHHHTTC--
T ss_pred             -------------------hhh-hHHHHHHHHHHHHHHHHHHHCcCEECHHHHHHHHHcCCc-hHHHHHHHHHHHhCh--
Confidence                               112 367888888888888899999999999999999999988 457877788888866  


Q ss_pred             HHHHHHHHHHHH
Q psy14319        469 QVCHEKIRVLSH  480 (486)
Q Consensus       469 r~Ah~~v~~~~~  480 (486)
                      .+||++|+++++
T Consensus       402 ~~A~~iv~~~~~  413 (459)
T 3bhg_A          402 PNAYEQLKELTR  413 (459)
T ss_dssp             TTHHHHHHHHHT
T ss_pred             HHHHHHHHHHHh
Confidence            499999999998

>3e04_A Fumarase, fumarate hydratase; TCA cycle, structural genomics consortium, alterna initiation, anti-oncogene, cell cycle, disease mutation; 1.95A {Homo sapiens}

Probab=99.96  E-value=6.1e-29  Score=263.71  Aligned_cols=183  Identities=19%  Similarity=0.194  Sum_probs=142.8

Q ss_pred             CCCcHHHHHHHHHHHcCCCC--CccccccccCccHHHHHHHHHHHHHHHHHHHHHHHHHHhh-----hhhccccccCCCC
Q psy14319        225 DGDKVKALDRLVTKKAGFTS--SHIITGQTYSRKVDVIVTGVLSSLGASIHKLATDLRLLAH-----MKEIEEPFESTQI  297 (486)
Q Consensus       225 ~g~~~~~i~~~lA~~LGf~~--a~~~~~~~~~rd~~~e~~~~l~~~~~~l~rla~Dl~l~ss-----~~el~~~~~~~~~  297 (486)
                      +...+..+.+.+++.|||+.  ..|.++++++||+++|++++|+.++++|+|||+||++|+|     ||||.+|  +.++
T Consensus       266 ~~~~~~~v~~~la~~lGl~~~~~~n~~da~~~rD~~ve~~~~L~~la~~L~Kia~DlrllsSgpr~g~gEi~lp--~~~~  343 (490)
T 3e04_A          266 RIGFAEKVAAKVAALTGLPFVTAPNKFEALAAHDALVELSGAMNTTACSLMKIANDIRFLGSGPRSGLGELILP--ENEP  343 (490)
T ss_dssp             CTTHHHHHHHHHHHHHTSCCEECSCHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHTCCSSSSCCCEECC--CCSC
T ss_pred             ChhHHHHHHHHHHHHhCCCCcCCCCHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCeeEEECC--CCCC
Confidence            33446788999999999985  2367789999999999999999999999999999999996     8899876  4699


Q ss_pred             cCcCCCCCCCchHHHHHHHHHHHHHHHhHHHHHHhhhhHhhhcccccCCCCCCccccchhhhhhccCCcchhhhhhccCC
Q psy14319        298 GSSAMAYKRNPMRSERLCSLARFLMSLHQNSLATASTQWMERTLDDSANRFPTKSVFSCVTQVKQHGKENDLVDRIRADP  377 (486)
Q Consensus       298 GSSiMPqKrNP~~~E~~~~~a~~~~g~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~g~~~d~~~~~~~~~  377 (486)
                      |||||||||||+.+|.++++|++++|+++++...+..+++|++                                     
T Consensus       344 GSSiMP~K~NPv~~E~i~~~a~~v~G~~~ai~~a~~~g~~eln-------------------------------------  386 (490)
T 3e04_A          344 GSSIMPGKVNPTQCEAMTMVAAQVMGNHVAVTVGGSNGHFELN-------------------------------------  386 (490)
T ss_dssp             C-----CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHTCBTTBC-------------------------------------
T ss_pred             CCCCCCCCCCcHHHHHHHHHHHHHHHHHHHHHHHHhccccccc-------------------------------------
Confidence            9999999999999999999999999999998776554444432                                     


Q ss_pred             CCccccccCCCCCCCccccCCchhHhhhhhhcccchHHHHHHHHHHHHHHHhchhCCeeCHHHHHHHHhccCChhHHHHH
Q psy14319        378 YFAPILNQMPTLLDPKSFYGRAPEQQRLSAKGIHTLSESFLTTDCLLITLQNVLEGLVVYPKVIQRHIDQELPFMATENI  457 (486)
Q Consensus       378 ~~~~~~~~~~~~~~p~~~~~~~~~q~~~~~~~~~~l~~~~~~~~~~l~~~~~~l~~l~v~~~~m~~~l~~~~~~~~a~~~  457 (486)
                      +|           +|..              .|..++++..+.++++.+...|++||+||++||+++++.+.+  +++.+
T Consensus       387 ~~-----------~p~~--------------~~~ll~s~~ll~~~~~~~~~~~v~gl~vn~erm~~~l~~s~~--lvTaL  439 (490)
T 3e04_A          387 VF-----------KPMM--------------IKNVLHSARLLGDASVSFTENCVVGIQANTERINKLMNESLM--LVTAL  439 (490)
T ss_dssp             CC-----------HHHH--------------HHHHHHHHHHHHHHHHHHHHHTGGGCEECHHHHHHHHHHCSG--GGGGG
T ss_pred             cc-----------chHH--------------HHHHHHHHHHHHHHHHHHHHHHHccCEECHHHHHHHHhhchH--HHHHh
Confidence            12           2222              245889999999999999999999999999999999987754  44444


Q ss_pred             HHHHHHcCCChHHHHHHHHHH
Q psy14319        458 IMAMVKAGGDRQVCHEKIRVL  478 (486)
Q Consensus       458 ~~~L~~~g~~fr~Ah~~v~~~  478 (486)
                          .+. ++++.|+++++++
T Consensus       440 ----a~~-iGy~~a~~iak~A  455 (490)
T 3e04_A          440 ----NPH-IGYDKAAKIAKTA  455 (490)
T ss_dssp             ----HHH-HCHHHHHHHHHHH
T ss_pred             ----hhH-HHHHHHHHHHHHH
Confidence                344 4455665555544

>1jsw_A L-aspartase, L-aspartate ammonia-lyase; amino acid ammonia-lyase; HET: BGC; 2.70A {Escherichia coli} SCOP: a.127.1.1

Probab=99.96  E-value=2.1e-28  Score=260.84  Aligned_cols=179  Identities=19%  Similarity=0.217  Sum_probs=145.8

Q ss_pred             HHHHHHHHHHHcCCCC-Cc-cccccccCccHHHHHHHHHHHHHHHHHHHHHHHHHHhh-----hhhccccccCCCCcCcC
Q psy14319        229 VKALDRLVTKKAGFTS-SH-IITGQTYSRKVDVIVTGVLSSLGASIHKLATDLRLLAH-----MKEIEEPFESTQIGSSA  301 (486)
Q Consensus       229 ~~~i~~~lA~~LGf~~-a~-~~~~~~~~rd~~~e~~~~l~~~~~~l~rla~Dl~l~ss-----~~el~~~~~~~~~GSSi  301 (486)
                      ...+.+.+++.|||.. +. |.++++++||+++|++++|+.++++|+|||+||++|+|     ||||.+|+  +++||||
T Consensus       246 ~~~v~~~la~~LGl~~~~~~n~~da~~~rD~~~e~~~~l~~la~~L~kia~Dl~ll~S~pr~e~gei~lp~--~~~GSSi  323 (478)
T 1jsw_A          246 SPLAVKKLAEVTGFPCVPAEDLIEATSDCGAYVMVHGALKRLAVKMSKICNDLRLLSSGPRAGLNEINLPE--LQAGSSI  323 (478)
T ss_dssp             HHHHHHHHHHHHCCCCEECSCSSSBTTBCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCSTTTSCCCEECCC--CSCCCSS
T ss_pred             HHHHHHHHHHHcCCCCCcCCCHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCccCceeEECCC--CCCCCCC
Confidence            5788899999999984 33 67789999999999999999999999999999999995     89999985  7899999


Q ss_pred             CCCCCCchHHHHHHHHHHHHHHHhHHHHHHhhhhHhhhcccccCCCCCCccccchhhhhhccCCcchhhhhhccCCCCcc
Q psy14319        302 MAYKRNPMRSERLCSLARFLMSLHQNSLATASTQWMERTLDDSANRFPTKSVFSCVTQVKQHGKENDLVDRIRADPYFAP  381 (486)
Q Consensus       302 MPqKrNP~~~E~~~~~a~~~~g~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~g~~~d~~~~~~~~~~~~~  381 (486)
                      |||||||+.+|.++++|++++|++.+++..+..+++|+++.                                       
T Consensus       324 MP~K~NP~~~E~i~~~a~~v~g~~~~~~~~~~~~~~e~~~~---------------------------------------  364 (478)
T 1jsw_A          324 MPAKVNPVVPEVVNQVCFKVIGNDTTVTMAAEAGQLQLNVM---------------------------------------  364 (478)
T ss_dssp             CCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHTCBTTBCTT---------------------------------------
T ss_pred             CCcccCCHHHHHHHHHHHHHHhHHHHHHHHHhccchhhccc---------------------------------------
Confidence            99999999999999999999999999987766556665431                                       


Q ss_pred             ccccCCCCCCCccccCCchhHhhhhhhcccchHHHHHHHHHHHHHHH-hchhCCeeCHHHHHHHHhccCChhHHHHHHHH
Q psy14319        382 ILNQMPTLLDPKSFYGRAPEQQRLSAKGIHTLSESFLTTDCLLITLQ-NVLEGLVVYPKVIQRHIDQELPFMATENIIMA  460 (486)
Q Consensus       382 ~~~~~~~~~~p~~~~~~~~~q~~~~~~~~~~l~~~~~~~~~~l~~~~-~~l~~l~v~~~~m~~~l~~~~~~~~a~~~~~~  460 (486)
                               +|..               |..+.+++.++..++..+. .|+++|+||++||+++++.+.+++  ++++..
T Consensus       365 ---------~p~~---------------~~~l~~s~~~l~~~l~~~~~~~l~gl~vn~erm~~~l~~~~~l~--t~La~~  418 (478)
T 1jsw_A          365 ---------EPVI---------------GQAMFESVHILTNACYNLLEKCINGITANKEVCEGYVYNSIGIV--TYLNPF  418 (478)
T ss_dssp             ---------HHHH---------------HHHHHHHHHHHHHHHHHHHHHTGGGCEECHHHHHHHHTTCTTCG--GGTHHH
T ss_pred             ---------chHH---------------HHHHHHHHHHHHHHHHHHHHHHHccCeecHHHHHHHHHhCchHH--HHHHHh
Confidence                     1221               2357788888888888887 699999999999999999887644  445443


Q ss_pred             HHHcCCChHHHHHHHHHHHHHhh
Q psy14319        461 MVKAGGDRQVCHEKIRVLSHQAG  483 (486)
Q Consensus       461 L~~~g~~fr~Ah~~v~~~~~~a~  483 (486)
                           ++    |++++++++.|.
T Consensus       419 -----lg----~~~a~~~v~~a~  432 (478)
T 1jsw_A          419 -----IG----HHNGDIVGKICA  432 (478)
T ss_dssp             -----HC----HHHHHHHHHHHH
T ss_pred             -----hh----HHHHHHHHHHHH
Confidence                 33    444455555543

>4adm_A Fumarase C, fumarate hydratase class II; lyase, tricarboxylic acid cycle; HET: SRT; 1.65A {Mycobacterium tuberculosis} PDB: 4adl_A* 3no9_A 4apa_A 4apb_A 3qbp_A 3rd8_A 3rrp_A

Probab=99.96  E-value=1e-28  Score=263.07  Aligned_cols=185  Identities=18%  Similarity=0.181  Sum_probs=136.0

Q ss_pred             CCCcHHHHHHHHHHHcCC-CC-C-ccccccccCccHHHHHHHHHHHHHHHHHHHHHHHHHHhh-----hhhccccccCCC
Q psy14319        225 DGDKVKALDRLVTKKAGF-TS-S-HIITGQTYSRKVDVIVTGVLSSLGASIHKLATDLRLLAH-----MKEIEEPFESTQ  296 (486)
Q Consensus       225 ~g~~~~~i~~~lA~~LGf-~~-a-~~~~~~~~~rd~~~e~~~~l~~~~~~l~rla~Dl~l~ss-----~~el~~~~~~~~  296 (486)
                      +......+.+.+++.||| .. + .|.++++++||+++|++++|+.++++|+|||+||++|+|     ||||.+|  ..+
T Consensus       260 ~~~~~~~v~~~la~~lG~~~~~~~~n~~~a~~~rD~~~e~~~~L~~la~~L~Kia~DlrllsSgpr~e~gei~lp--~~q  337 (495)
T 4adm_A          260 PDDFGVRVVAVLVAQTGLSELRTAANSFEAQAARDGLVEASGALRTIAVSLTKIANDIRWMGSGPLTGLAEIQLP--DLQ  337 (495)
T ss_dssp             CTTHHHHHHHHHHHHHCCTTCEECSCTTHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHTCBSTTSCCCEECC--CC-
T ss_pred             ChhHHHHHHHHHHHHhCCCCCccccchHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCcceEECC--CCC
Confidence            344567888999999999 43 2 367789999999999999999999999999999999996     9999976  479


Q ss_pred             CcCcCCCCCCCchHHHHHHHHHHHHHHHhHHHHHHhhhhHhhhcccccCCCCCCccccchhhhhhccCCcchhhhhhccC
Q psy14319        297 IGSSAMAYKRNPMRSERLCSLARFLMSLHQNSLATASTQWMERTLDDSANRFPTKSVFSCVTQVKQHGKENDLVDRIRAD  376 (486)
Q Consensus       297 ~GSSiMPqKrNP~~~E~~~~~a~~~~g~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~g~~~d~~~~~~~~  376 (486)
                      +|||||||||||+.+|.++++|++++|+.++++.++..+++|.                                     
T Consensus       338 ~GSSiMP~K~NPv~~E~i~~~a~~v~G~~~~i~~a~~~g~~el-------------------------------------  380 (495)
T 4adm_A          338 PGSSIMPGKVNPVLPEAVTQVAAQVIGNDAAIAWGGANGAFEL-------------------------------------  380 (495)
T ss_dssp             --------CCCCHHHHHHHHHHHHHHHHHHHHHHHHHTCBTTB-------------------------------------
T ss_pred             CCCCCCCCCCCcHHHHHHHHHHHHHHhHHHHHHHHHHcChHHh-------------------------------------
Confidence            9999999999999999999999999999999887754333322                                     


Q ss_pred             CCCccccccCCCCCCCccccCCchhHhhhhhhcccchHHHHHHHHHHHHHH-HhchhCCeeCHHHHHHHHhccCChhHHH
Q psy14319        377 PYFAPILNQMPTLLDPKSFYGRAPEQQRLSAKGIHTLSESFLTTDCLLITL-QNVLEGLVVYPKVIQRHIDQELPFMATE  455 (486)
Q Consensus       377 ~~~~~~~~~~~~~~~p~~~~~~~~~q~~~~~~~~~~l~~~~~~~~~~l~~~-~~~l~~l~v~~~~m~~~l~~~~~~~~a~  455 (486)
                                 +++.|...              | .+.+.+.++..++..+ ..|++||+||++||+++++.+.+++  +
T Consensus       381 -----------n~~~p~i~--------------~-~l~~s~~~l~~~l~~~~~~~l~gl~vn~erm~~~l~~s~~l~--t  432 (495)
T 4adm_A          381 -----------NVYIPMMA--------------R-NILESFKLLTNVSRLFAQRCIAGLTANVEHLRRLAESSPSIV--T  432 (495)
T ss_dssp             -----------CCCHHHHH--------------H-HHHHHHHHHHHHHHHHHHHTGGGCEECHHHHHHHHHHCGGGG--G
T ss_pred             -----------hhhHHHHH--------------H-HHHHHHHHHHHHHHHHHHHHHccCEECHHHHHHHHhccccHH--H
Confidence                       11222211              2 2445555555555555 8999999999999999999886643  3


Q ss_pred             HHHHHHHHcCCChHHHHHHHHHHHHH
Q psy14319        456 NIIMAMVKAGGDRQVCHEKIRVLSHQ  481 (486)
Q Consensus       456 ~~~~~L~~~g~~fr~Ah~~v~~~~~~  481 (486)
                      +    |++. ++|+.||++++++..+
T Consensus       433 ~----La~~-igy~~a~~ia~~a~~~  453 (495)
T 4adm_A          433 P----LNSA-IGYEEAAAVAKQALKE  453 (495)
T ss_dssp             G----GHHH-HCHHHHHHHHHHHHHH
T ss_pred             H----hhhh-hhHHHHHHHHHHHHHh
Confidence            3    4444 5789999888776543

>1fur_A Fumarase C, FUMC; hydrolyase, carbon oxygen lyase, KREB'S cycle enzyme, fumara hydratase; 1.95A {Escherichia coli} SCOP: a.127.1.1 PDB: 1fuo_A* 1yfe_A 1kq7_A* 1fuq_A* 1fup_A* 2fus_A* 3tv2_A

Probab=99.96  E-value=2.1e-28  Score=259.99  Aligned_cols=179  Identities=18%  Similarity=0.108  Sum_probs=146.6

Q ss_pred             cHHHHHHHHHHHcCCCC-Cc-cccccccCccHHHHHHHHHHHHHHHHHHHHHHHHHHhh-----hhhccccccCCCCcCc
Q psy14319        228 KVKALDRLVTKKAGFTS-SH-IITGQTYSRKVDVIVTGVLSSLGASIHKLATDLRLLAH-----MKEIEEPFESTQIGSS  300 (486)
Q Consensus       228 ~~~~i~~~lA~~LGf~~-a~-~~~~~~~~rd~~~e~~~~l~~~~~~l~rla~Dl~l~ss-----~~el~~~~~~~~~GSS  300 (486)
                      .+..+.+.+++.|||.. +. |.++++++||+++|++++++.++++|+|||+||++|+|     ||||.+|+  .++|||
T Consensus       242 ~~~~v~~~la~~LGl~~~~~~n~~~a~~~rD~~~e~~~~l~~la~~L~kia~Dl~ll~S~~r~~~gei~lp~--~~~GSS  319 (467)
T 1fur_A          242 YARRVADELAVITCAPFVTAPNKFEALATCDALVQAHGALKGLAASLMKIANDVRWLASGPRCGIGEISIPE--NEPGSS  319 (467)
T ss_dssp             HHHHHHHHHHHHHTSCCEECSCHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHTCCSSSSCCSEECCC--CSCCCT
T ss_pred             HHHHHHHHHHHHhCCCCccCCCHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCccCceeEECCC--CCCCCC
Confidence            46788999999999984 33 56678999999999999999999999999999999996     99999875  569999


Q ss_pred             CCCCCCCchHHHHHHHHHHHHHHHhHHHHHHhhhhHhhhcccccCCCCCCccccchhhhhhccCCcchhhhhhccCCCCc
Q psy14319        301 AMAYKRNPMRSERLCSLARFLMSLHQNSLATASTQWMERTLDDSANRFPTKSVFSCVTQVKQHGKENDLVDRIRADPYFA  380 (486)
Q Consensus       301 iMPqKrNP~~~E~~~~~a~~~~g~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~g~~~d~~~~~~~~~~~~  380 (486)
                      ||||||||+.+|.++++|++++|++.+++.++..+|+|++...|                                    
T Consensus       320 iMP~K~NP~~~E~i~~~a~~v~g~~~~~~~~~~~g~~e~~~~~~------------------------------------  363 (467)
T 1fur_A          320 IMPGKVNPTQCEALTMLCCQVMGNDVAINMGGASGNFELNVFRP------------------------------------  363 (467)
T ss_dssp             TCTTCCCCHHHHHHHHHHHHHHHHHHHHHHHHHTCBTTBCCCHH------------------------------------
T ss_pred             CCCcccCCHHHHHHHHHHHHHHHHHHHHHHHHhcCCccccchhh------------------------------------
Confidence            99999999999999999999999999999887777888865321                                    


Q ss_pred             cccccCCCCCCCccccCCchhHhhhhhhcccchHHHHHHHHHHHHHH-HhchhCCeeCHHHHHHHHhccCChhHHHHHHH
Q psy14319        381 PILNQMPTLLDPKSFYGRAPEQQRLSAKGIHTLSESFLTTDCLLITL-QNVLEGLVVYPKVIQRHIDQELPFMATENIIM  459 (486)
Q Consensus       381 ~~~~~~~~~~~p~~~~~~~~~q~~~~~~~~~~l~~~~~~~~~~l~~~-~~~l~~l~v~~~~m~~~l~~~~~~~~a~~~~~  459 (486)
                                  ..              .| .+.+++.++..++..+ ..|+++|+||+++|+++++.+.++  ++    
T Consensus       364 ------------~~--------------~~-~l~~s~~~l~~~l~~~~~~~l~gl~vn~erm~~~l~~~~~l--~t----  410 (467)
T 1fur_A          364 ------------MV--------------IH-NFLQSVRLLADGMESFNKHCAVGIEPNRERINQLLNESLML--VT----  410 (467)
T ss_dssp             ------------HH--------------HH-HHHHHHHHHHHHHHHHHHHTGGGCEECHHHHHHHHHHCSTT--HH----
T ss_pred             ------------HH--------------HH-HHHHHHHHHHHHHHHHHHHHHccCeeCHHHHHHHHHhCccH--HH----
Confidence                        11              12 3446677777777777 679999999999999999998775  33    


Q ss_pred             HHHHcCCChHHHHHHHHHH
Q psy14319        460 AMVKAGGDRQVCHEKIRVL  478 (486)
Q Consensus       460 ~L~~~g~~fr~Ah~~v~~~  478 (486)
                      .|++. ++++.||++++.+
T Consensus       411 ~La~~-lg~~~a~~~~~~a  428 (467)
T 1fur_A          411 ALNTH-IGYDKAAEIAKKA  428 (467)
T ss_dssp             HHHTT-SCHHHHHHHHHHH
T ss_pred             HhHhh-ccHHHHHHHHHHH
Confidence            45554 6556666665543

>4hgv_A Fumarase C, fumarate hydratase class II; nysgrc, PSI-biology, structural genomics, NEW YORK structura genomics research consortium; 2.09A {Sinorhizobium meliloti}

Probab=99.96  E-value=1.4e-28  Score=262.51  Aligned_cols=184  Identities=17%  Similarity=0.205  Sum_probs=148.4

Q ss_pred             CcHHHHHHHHHHHcCCC--CCccccccccCccHHHHHHHHHHHHHHHHHHHHHHHHHHhh-----hhhccccccCCCCcC
Q psy14319        227 DKVKALDRLVTKKAGFT--SSHIITGQTYSRKVDVIVTGVLSSLGASIHKLATDLRLLAH-----MKEIEEPFESTQIGS  299 (486)
Q Consensus       227 ~~~~~i~~~lA~~LGf~--~a~~~~~~~~~rd~~~e~~~~l~~~~~~l~rla~Dl~l~ss-----~~el~~~~~~~~~GS  299 (486)
                      .....+.+.+++.+||.  ...|.++++++||+++|++++|+.++.+|+|||+||++|+|     ++|+  +++++++||
T Consensus       273 ~~~~~v~~~la~~~gl~f~~a~n~~~~~~~rD~~~e~~~~L~~la~~L~Kia~Dirll~S~~~~g~~Ei--~~p~~q~GS  350 (495)
T 4hgv_A          273 GFAEKVAEEIAAITGIGFTSAPNKFEALAAHDSMVFSHGAINATAAALFKIANDIRFLGSGPRSGLGEL--SLPENEPGS  350 (495)
T ss_dssp             THHHHHHHHHHHHHTSCCEECSCHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHTCCSSSSCCCE--ECCCCSCCC
T ss_pred             hHHHHHHHHHHHHhCCCccccCCHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcceeeeEE--ecCcCCccc
Confidence            34556777888877765  34466789999999999999999999999999999999998     3444  467889999


Q ss_pred             cCCCCCCCchHHHHHHHHHHHHHHHhHHHHHHhhhhHhhhcccccCCCCCCccccchhhhhhccCCcchhhhhhccCCCC
Q psy14319        300 SAMAYKRNPMRSERLCSLARFLMSLHQNSLATASTQWMERTLDDSANRFPTKSVFSCVTQVKQHGKENDLVDRIRADPYF  379 (486)
Q Consensus       300 SiMPqKrNP~~~E~~~~~a~~~~g~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~g~~~d~~~~~~~~~~~  379 (486)
                      |||||||||+.+|.++++|.+++|+..++......+|+|++...|.                                  
T Consensus       351 SiMP~K~NPv~~E~i~~~a~~v~G~~~~i~~a~~~~~~e~n~~~~~----------------------------------  396 (495)
T 4hgv_A          351 SIMPGKVNPTQCEALTQVCVQVFGNHAALTFAGSQGHFELNVYNPL----------------------------------  396 (495)
T ss_dssp             -----CCCCHHHHHHHHHHHHHHHHHHHHHHHHHTCBTTBCCCHHH----------------------------------
T ss_pred             ccCccccChHHHHHHHHHHHHHHHHHHHHHHhcccccccccccchH----------------------------------
Confidence            9999999999999999999999999999988888888888764321                                  


Q ss_pred             ccccccCCCCCCCccccCCchhHhhhhhhcccchHHHHHHHHHHHHHHHhchhCCeeCHHHHHHHHhccCChhHHHHHHH
Q psy14319        380 APILNQMPTLLDPKSFYGRAPEQQRLSAKGIHTLSESFLTTDCLLITLQNVLEGLVVYPKVIQRHIDQELPFMATENIIM  459 (486)
Q Consensus       380 ~~~~~~~~~~~~p~~~~~~~~~q~~~~~~~~~~l~~~~~~~~~~l~~~~~~l~~l~v~~~~m~~~l~~~~~~~~a~~~~~  459 (486)
                                                  -.|..+++++.++++++.++..|+++|+||+++|+++++.+.+++      .
T Consensus       397 ----------------------------~~~~ll~s~~~l~~~~~~~~~~~i~gl~vn~erm~~~l~~s~~lv------t  442 (495)
T 4hgv_A          397 ----------------------------MAYNFLQSVQLLADAAISFTDNCVVGIEAREDNIKAALDRSLMLV------T  442 (495)
T ss_dssp             ----------------------------HHHHHHHHHHHHHHHHHHHHHHTGGGCEECHHHHHHHHHHCSGGG------G
T ss_pred             ----------------------------HHHHHHHHHHHHHHHHHHHHHHHhccCEECHHHHHHHHhcChhHH------H
Confidence                                        146789999999999999999999999999999999999876543      3


Q ss_pred             HHHHcCCChHHHHHHHHHHHHH
Q psy14319        460 AMVKAGGDRQVCHEKIRVLSHQ  481 (486)
Q Consensus       460 ~L~~~g~~fr~Ah~~v~~~~~~  481 (486)
                      +|+++ ++++.||++++++.++
T Consensus       443 aL~~~-iGy~~A~~iak~A~~~  463 (495)
T 4hgv_A          443 ALAPK-IGYDNAAKIAKTAHKN  463 (495)
T ss_dssp             GTHHH-HCHHHHHHHHHHHHHH
T ss_pred             HhhHH-HHHHHHHHHHHHHHHh
Confidence            45666 5678888888776654

>3ocf_A Fumarate lyase:delta crystallin; fumarase, brucellosis, orchitis, epididymiti mastitis, dehydration of fumarate to malate, KREB'S cycle; 2.10A {Brucella melitensis} PDB: 3oce_A

Probab=99.96  E-value=1.8e-28  Score=260.33  Aligned_cols=185  Identities=17%  Similarity=0.204  Sum_probs=138.9

Q ss_pred             CCCCCcHHHHHHHHHHHcCCCC--CccccccccCccHHHHHHHHHHHHHHHHHHHHHHHHHHhh-----hhhccccccCC
Q psy14319        223 PGDGDKVKALDRLVTKKAGFTS--SHIITGQTYSRKVDVIVTGVLSSLGASIHKLATDLRLLAH-----MKEIEEPFEST  295 (486)
Q Consensus       223 ~~~g~~~~~i~~~lA~~LGf~~--a~~~~~~~~~rd~~~e~~~~l~~~~~~l~rla~Dl~l~ss-----~~el~~~~~~~  295 (486)
                      +.+...+..+.+.+++.|||+.  ..|.++++++||+++|++++|+.++.+|+|||+||++|+|     ||||.+|  ..
T Consensus       257 ~~~~~~~~~v~~~la~~lGl~~~~~~n~~~a~~~rD~~~e~~~~L~~la~~L~Kia~DlrllsSgpr~g~gEi~lp--~~  334 (478)
T 3ocf_A          257 NASHAYAEQAIVELSQISGIELKATGNLVEASWDTGAFVTFSGILRRIAVKLSKIANDLRLLSSGPRSGLGEIRLP--AV  334 (478)
T ss_dssp             ----CHHHHHHHHHHHHHTSCCEECSCHHHHTTCCHHHHHHHHHHHHHHHHHHHHHHHHHHHTCBSSSSCCCEECC--CC
T ss_pred             CCChhHHHHHHHHHHHhcCCCCccCCChhhhhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCceeEEECC--CC
Confidence            3444557788899999999984  2366788999999999999999999999999999999996     8999987  47


Q ss_pred             CCcCcCCCCCCCchHHHHHHHHHHHHHHHhHHHHHHhhhhHhhhcccccCCCCCCccccchhhhhhccCCcchhhhhhcc
Q psy14319        296 QIGSSAMAYKRNPMRSERLCSLARFLMSLHQNSLATASTQWMERTLDDSANRFPTKSVFSCVTQVKQHGKENDLVDRIRA  375 (486)
Q Consensus       296 ~~GSSiMPqKrNP~~~E~~~~~a~~~~g~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~g~~~d~~~~~~~  375 (486)
                      ++|||||||||||+.+|.++++|++++|+..+++.++..+++|.                                    
T Consensus       335 q~GSSiMP~K~NPv~~E~i~~~a~~V~G~~~~i~~a~~~g~lel------------------------------------  378 (478)
T 3ocf_A          335 QPGSSIMPGKVNPVIPESVNQVCYQVIGNDLTVTMAAESGQLQL------------------------------------  378 (478)
T ss_dssp             SCCBTTBTTCCCCHHHHHHHHHHHHHHHHHHHHHHHHHTCBTTB------------------------------------
T ss_pred             CCcCCCCCcccCcHHHHHHHHHHHHHHhHHHHHHHHHhcCcchh------------------------------------
Confidence            99999999999999999999999999999998877654333322                                    


Q ss_pred             CCCCccccccCCCCCCCccccCCchhHhhhhhhcccchHHHHHHHHHHHHHHHhchhCCeeCHHHHHHHHhccCChhHHH
Q psy14319        376 DPYFAPILNQMPTLLDPKSFYGRAPEQQRLSAKGIHTLSESFLTTDCLLITLQNVLEGLVVYPKVIQRHIDQELPFMATE  455 (486)
Q Consensus       376 ~~~~~~~~~~~~~~~~p~~~~~~~~~q~~~~~~~~~~l~~~~~~~~~~l~~~~~~l~~l~v~~~~m~~~l~~~~~~~~a~  455 (486)
                                  +++.|.+              .|..+..+..+...+..+...|++||+||++||+++++.+.+++  +
T Consensus       379 ------------n~~~p~i--------------~~~l~~s~~ll~~~~~~~~~~~v~gl~vn~erm~~~l~~s~~lv--t  430 (478)
T 3ocf_A          379 ------------NAFEPLI--------------VYNILSSMRLLGRAMTNLAERCVDGIEANVERCRAGAEESISLA--T  430 (478)
T ss_dssp             ------------CTTHHHH--------------HHHHHHHHHHHHHHHHHHHHHTGGGCEECHHHHHHHHHTCGGGG--G
T ss_pred             ------------cccchhH--------------HHHHHHHHHHHHHHHHHHHHHhhCCCEECHHHHHHHHHhCccHH--H
Confidence                        1122221              12344444455555556667799999999999999999886644  3


Q ss_pred             HHHHHHHHcCCChHHHHHHHHHH
Q psy14319        456 NIIMAMVKAGGDRQVCHEKIRVL  478 (486)
Q Consensus       456 ~~~~~L~~~g~~fr~Ah~~v~~~  478 (486)
                      +|    .+. ++++.|+++++++
T Consensus       431 aL----a~~-igy~~a~~ia~~A  448 (478)
T 3ocf_A          431 AL----VPV-VGYARAAEIAKQA  448 (478)
T ss_dssp             GG----HHH-HHHHHHHHHHHHH
T ss_pred             Hh----hHH-HHHHHHHHHHHHH
Confidence            44    444 3445555554443

>1vdk_A Fumarase C, fumarate hydratase class II; TCA cycle, riken structural genomics/proteomics in RSGI, structural genomics, lyase; 1.80A {Thermus thermophilus} SCOP: a.127.1.1

Probab=99.96  E-value=1.5e-28  Score=261.27  Aligned_cols=177  Identities=17%  Similarity=0.180  Sum_probs=143.3

Q ss_pred             cHHHHHHHHHHHcCCCC-Cc-cccccccCccHHHHHHHHHHHHHHHHHHHHHHHHHHhh-----hhhccccccCCCCcCc
Q psy14319        228 KVKALDRLVTKKAGFTS-SH-IITGQTYSRKVDVIVTGVLSSLGASIHKLATDLRLLAH-----MKEIEEPFESTQIGSS  300 (486)
Q Consensus       228 ~~~~i~~~lA~~LGf~~-a~-~~~~~~~~rd~~~e~~~~l~~~~~~l~rla~Dl~l~ss-----~~el~~~~~~~~~GSS  300 (486)
                      ....+.+.+++.|||.. +. |.++++++||+++|++++++.++++|+|||+||++|+|     ||||.+|+  .++|||
T Consensus       242 ~~~~v~~~la~~LG~~~~~~~n~~~a~~~rD~~~e~~~~l~~la~~L~kia~Dl~ll~S~~r~~~gei~lp~--~~~GSS  319 (466)
T 1vdk_A          242 FGELVAKYLAEETGLPFRVAENRFAALAAHDELVNVMGAIRTLAGALMKIGNDVRWLASGPYAGIGEITIPA--NEPGSS  319 (466)
T ss_dssp             HHHHHHHHHHHHHSSCCEECSCTTHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHTCBSSSSCCSEECCC--CSCCSS
T ss_pred             HHHHHHHHHHHHcCCCCCCCcchHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCceeEECCC--CCCcCC
Confidence            35788999999999995 33 66789999999999999999999999999999999996     99999986  479999


Q ss_pred             CCCCCCCchHHHHHHHHHHHHHHHhHHHHHHhhhhHhhhcccccCCCCCCccccchhhhhhccCCcchhhhhhccCCCCc
Q psy14319        301 AMAYKRNPMRSERLCSLARFLMSLHQNSLATASTQWMERTLDDSANRFPTKSVFSCVTQVKQHGKENDLVDRIRADPYFA  380 (486)
Q Consensus       301 iMPqKrNP~~~E~~~~~a~~~~g~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~g~~~d~~~~~~~~~~~~  380 (486)
                      ||||||||+.+|.++++|++++|++.+++.++..+++|++.                                       
T Consensus       320 iMP~K~NP~~~E~i~~~a~~v~g~~~~~~~~~~~g~~e~~~---------------------------------------  360 (466)
T 1vdk_A          320 IMPGKVNPTQVEALTMVVVRVYGNDHTVAFAGSQGNFQLNV---------------------------------------  360 (466)
T ss_dssp             CCTTCCCCHHHHHHHHHHHHHHHHHHHHHHHHTTCBTTBCS---------------------------------------
T ss_pred             CCCCCCCcHHHHHHHHHHHHHHhHHHHHHHHHHccchhhhh---------------------------------------
Confidence            99999999999999999999999999998876544444432                                       


Q ss_pred             cccccCCCCCCCccccCCchhHhhhhhhcccchHHHHHHHHHHHHHH-HhchhCCeeCHHHHHHHHhccCChhHHHHHHH
Q psy14319        381 PILNQMPTLLDPKSFYGRAPEQQRLSAKGIHTLSESFLTTDCLLITL-QNVLEGLVVYPKVIQRHIDQELPFMATENIIM  459 (486)
Q Consensus       381 ~~~~~~~~~~~p~~~~~~~~~q~~~~~~~~~~l~~~~~~~~~~l~~~-~~~l~~l~v~~~~m~~~l~~~~~~~~a~~~~~  459 (486)
                               +.|..               |..+++++.++..++..+ ..|+++|+||++||+++++.+.++  ++.++.
T Consensus       361 ---------~~~~~---------------~~~l~~s~~~l~~~l~~~~~~~l~gl~vn~erm~~~l~~~~~l--~t~La~  414 (466)
T 1vdk_A          361 ---------YKPVM---------------AYSTLESINLLADAVASFDAHLAQGIEPNLERIEEYLQKNPML--ATALNK  414 (466)
T ss_dssp             ---------CHHHH---------------HHHHHHHHHHHHHHHHHHHHHTGGGCEECHHHHHHHHTTCGGG--GHHHHH
T ss_pred             ---------hhHHH---------------HHHHHHHHHHHHHHHHHHHHHHhccCEEcHHHHHHHHHhcchH--HHHHHH
Confidence                     22221               235778888888888888 569999999999999999887664  455555


Q ss_pred             HHHHcCCChHHHHHHHH
Q psy14319        460 AMVKAGGDRQVCHEKIR  476 (486)
Q Consensus       460 ~L~~~g~~fr~Ah~~v~  476 (486)
                      .|     +++.||++|+
T Consensus       415 ~l-----g~~~a~~~v~  426 (466)
T 1vdk_A          415 AI-----GYDKAAEIVK  426 (466)
T ss_dssp             HH-----CSHHHHTTTT
T ss_pred             hc-----cHHHHHHHHH
Confidence            33     4444444443

>1yfm_A Fumarase, YFUM; lyase, krebs cycle, active site water, hydratase, subunit active site; 2.60A {Saccharomyces cerevisiae} SCOP: a.127.1.1

Probab=99.95  E-value=5e-28  Score=257.81  Aligned_cols=179  Identities=20%  Similarity=0.207  Sum_probs=144.6

Q ss_pred             cHHHHHHHHHHHcCCCC--CccccccccCccHHHHHHHHHHHHHHHHHHHHHHHHHHhh-----hhhccccccCCCCcCc
Q psy14319        228 KVKALDRLVTKKAGFTS--SHIITGQTYSRKVDVIVTGVLSSLGASIHKLATDLRLLAH-----MKEIEEPFESTQIGSS  300 (486)
Q Consensus       228 ~~~~i~~~lA~~LGf~~--a~~~~~~~~~rd~~~e~~~~l~~~~~~l~rla~Dl~l~ss-----~~el~~~~~~~~~GSS  300 (486)
                      ....+.+.+++.|||+.  ..|.++++++||+++|++++|+.++++|+|||+||++|+|     ||||.+|+  .++|||
T Consensus       267 ~~~~v~~~la~~lGl~~~~~~n~~~a~~~rD~~~e~~~~L~~la~~L~Kia~DlrllsS~pr~g~gei~lp~--~~~GSS  344 (488)
T 1yfm_A          267 FDVKIAEQISKETGLKFQTAPNRFEALAAHDAIVECSGALNTLACSLFKIAQDIRYLGSGPRCGYHELMLPE--NEPGSS  344 (488)
T ss_dssp             HHHHHHHHHHHHHSSCCEECSCHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHTCCSSSSCCCEECCC--CSCCCT
T ss_pred             HHHHHHHHHHHHhCCCCccCccHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcCCceeEECCC--CCCcCC
Confidence            36788999999999985  2356788999999999999999999999999999999996     99999885  579999


Q ss_pred             CCCCCCCchHHHHHHHHHHHHHHHhHHHHHHhhhhHhhhcccccCCCCCCccccchhhhhhccCCcchhhhhhccCCCCc
Q psy14319        301 AMAYKRNPMRSERLCSLARFLMSLHQNSLATASTQWMERTLDDSANRFPTKSVFSCVTQVKQHGKENDLVDRIRADPYFA  380 (486)
Q Consensus       301 iMPqKrNP~~~E~~~~~a~~~~g~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~g~~~d~~~~~~~~~~~~  380 (486)
                      ||||||||+.+|.++++|++++|++.+++.++..+++|++.                                       
T Consensus       345 iMP~K~NPv~~E~i~~~a~~v~G~~~~i~~a~~~g~~eln~---------------------------------------  385 (488)
T 1yfm_A          345 IMPGKVNPTQNEALTQVCVQVMGNNAAITFAGSQGQFELNV---------------------------------------  385 (488)
T ss_dssp             TSTTCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCBTTBCS---------------------------------------
T ss_pred             CcccccCcHHHHHHHHHHHHHHhHHHHHHHHHhcccchhhh---------------------------------------
Confidence            99999999999999999999999999998876544554432                                       


Q ss_pred             cccccCCCCCCCccccCCchhHhhhhhhcccchHHHHHHHHHHHHHH-HhchhCCeeCHHHHHHHHhccCChhHHHHHHH
Q psy14319        381 PILNQMPTLLDPKSFYGRAPEQQRLSAKGIHTLSESFLTTDCLLITL-QNVLEGLVVYPKVIQRHIDQELPFMATENIIM  459 (486)
Q Consensus       381 ~~~~~~~~~~~p~~~~~~~~~q~~~~~~~~~~l~~~~~~~~~~l~~~-~~~l~~l~v~~~~m~~~l~~~~~~~~a~~~~~  459 (486)
                               +.|..               |..+.+++.++..++..+ ..|++||+||++||+++++.+.+++  +    
T Consensus       386 ---------~~p~~---------------~~~l~~s~~~l~~~l~~~~~~~i~gl~vn~erm~~~l~~s~~l~--t----  435 (488)
T 1yfm_A          386 ---------FKPVM---------------IANLLNSIRLITDAAYSFRVHCVEGIKANEPRIHELLTKSLMLV--T----  435 (488)
T ss_dssp             ---------CHHHH---------------HHHHHHHHHHHHHHHHHHHHHTGGGCEECHHHHHHHHHHCSGGG--T----
T ss_pred             ---------hhHHH---------------HHHHHHHHHHHHHHHHHHHHHHHccCEECHHHHHHHHccCchHH--H----
Confidence                     22221               224667777777777777 6699999999999999999987754  3    


Q ss_pred             HHHHcCCChHHHHHHHHHH
Q psy14319        460 AMVKAGGDRQVCHEKIRVL  478 (486)
Q Consensus       460 ~L~~~g~~fr~Ah~~v~~~  478 (486)
                      .|++. ++++.|+++++++
T Consensus       436 ~La~~-lg~~~a~~i~~~a  453 (488)
T 1yfm_A          436 ALNPK-IGYDAASKVAKNA  453 (488)
T ss_dssp             TTGGG-TCHHHHHHHHHHH
T ss_pred             HHHHh-ccHHHHHHHHHHH
Confidence            44555 5666666665554

>2fel_A 3-carboxy-CIS,CIS-muconate lactonizing enzyme; biodegradation, sulphonic acids, 3-sulphomuconate; 2.20A {Agrobacterium tumefaciens} PDB: 2fen_A

Probab=99.94  E-value=6.1e-27  Score=241.21  Aligned_cols=162  Identities=22%  Similarity=0.175  Sum_probs=125.4

Q ss_pred             cCCCCCCcccccccccCCCCCCCcHHHHHHHHHHHcCCCCCccccccccCccHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q psy14319        205 IIPDNRLSSHHTTKRSGRPGDGDKVKALDRLVTKKAGFTSSHIITGQTYSRKVDVIVTGVLSSLGASIHKLATDLRLLAH  284 (486)
Q Consensus       205 ~~~~~~g~~~~~~~~~~~~~~g~~~~~i~~~lA~~LGf~~a~~~~~~~~~rd~~~e~~~~l~~~~~~l~rla~Dl~l~ss  284 (486)
                      .++|..||.+         ..+..++.+++++++.|||..+.   .++++||+++|++++++.++++|+|||+||++|++
T Consensus       193 ~lGgavGT~~---------~~~~~~~~~~~~~a~~LG~~~~~---~~~~~RD~~~e~~~~l~~~a~~L~kia~Dirll~s  260 (359)
T 2fel_A          193 QFGGAAGTLE---------KLGDNAGAVRADLAKRLGLADRP---QWHNQRDGIAEFANLLSLVTGTLGKFGQDIALMAE  260 (359)
T ss_dssp             CCCCTTSSCT---------TTGGGHHHHHHHHHHHHTCBCCC---CCTTCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             CCcHHhccCc---------cCcchHHHHHHHHHHHhCcCCCc---hHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence            3667777753         23345689999999999999863   58899999999999999999999999999999999


Q ss_pred             hh-hccccccCCCCcCcCCCCCCCchHHHHHHHHHHHHHHHhHHHHHHhhhhHhhhcccccCCCCCCccccchhhhhhcc
Q psy14319        285 MK-EIEEPFESTQIGSSAMAYKRNPMRSERLCSLARFLMSLHQNSLATASTQWMERTLDDSANRFPTKSVFSCVTQVKQH  363 (486)
Q Consensus       285 ~~-el~~~~~~~~~GSSiMPqKrNP~~~E~~~~~a~~~~g~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~  363 (486)
                      -+ |+.+|+   ++|||||||||||+.+|.++++++++.|.+.+.+ .++.+|+||+.+.|.                  
T Consensus       261 ~e~Ei~~~~---~~GSS~MP~K~NP~~~E~i~~~a~~v~~~~~~~~-~~~~~~~er~~~~~~------------------  318 (359)
T 2fel_A          261 IGSEIRLSG---GGGSSAMPHKQNPVNAETLVTLARFNAVQISALH-QSLVQEQERSGAGWM------------------  318 (359)
T ss_dssp             HCTTEEEC---------------CCHHHHHHHHHHHHHHHHHHHHH-HTTCCCSSBCHHHHH------------------
T ss_pred             CCCeecCCC---CCCCccCCcccCCHHHHHHHHHHHHHHHHHHHHH-HHhhccCCCCCcccH------------------
Confidence            54 787764   5999999999999999999999999999999877 457889999886542                  


Q ss_pred             CCcchhhhhhccCCCCccccccCCCCCCCccccCCchhHhhhhhhcccchHHHHHHHHHHHHHHHhchhCCeeCHHHHHH
Q psy14319        364 GKENDLVDRIRADPYFAPILNQMPTLLDPKSFYGRAPEQQRLSAKGIHTLSESFLTTDCLLITLQNVLEGLVVYPKVIQR  443 (486)
Q Consensus       364 g~~~d~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~q~~~~~~~~~~l~~~~~~~~~~l~~~~~~l~~l~v~~~~m~~  443 (486)
                                                                  .+|..+++++.+++.++..+..++++|+||+++|..
T Consensus       319 --------------------------------------------~e~~~lp~~~~~~~~~L~~~~~v~~~l~v~~~~m~~  354 (359)
T 2fel_A          319 --------------------------------------------LEWLTLPQMVTATGTSLLVAERLAAQIDRLGADESH  354 (359)
T ss_dssp             --------------------------------------------HHHHHHHHHHHHHHHHHHHHHHHHHHEEEECC----
T ss_pred             --------------------------------------------HHHHHHHHHHHHHHHHHHHHHHHHccCEECHHHhCc
Confidence                                                        135589999999999999999999999999999987


Q ss_pred             H
Q psy14319        444 H  444 (486)
Q Consensus       444 ~  444 (486)
                      +
T Consensus       355 ~  355 (359)
T 2fel_A          355 H  355 (359)
T ss_dssp             -
T ss_pred             c
Confidence            5

>1tj7_A Argininosuccinate lyase; crystallin, E. coli, fumarase, ASPA lyase; 2.44A {Escherichia coli} SCOP: a.127.1.1

Probab=99.90  E-value=2.9e-24  Score=227.83  Aligned_cols=188  Identities=18%  Similarity=0.098  Sum_probs=160.2

Q ss_pred             HHHHHHHHcCCCCCc-cccccccCccHHHHHHHHHHHHHHHHHHHHHHHHHHhh--hhhccccccCCCCcCcCCCCCCCc
Q psy14319        232 LDRLVTKKAGFTSSH-IITGQTYSRKVDVIVTGVLSSLGASIHKLATDLRLLAH--MKEIEEPFESTQIGSSAMAYKRNP  308 (486)
Q Consensus       232 i~~~lA~~LGf~~a~-~~~~~~~~rd~~~e~~~~l~~~~~~l~rla~Dl~l~ss--~~el~~~~~~~~~GSSiMPqKrNP  308 (486)
                      .++++++.|||..+. |.++++++||+++|++++++.++++|+|||+||++|++  ||||+.| +...+|||||||||||
T Consensus       208 ~~~~la~~LGl~~~~~n~~~~~~~rD~~~e~~~~l~~~a~~L~kia~Di~ll~s~e~g~iel~-e~~~~GSSiMP~K~NP  286 (457)
T 1tj7_A          208 DREQLAGWLGFASATRNSLDSVSDRDHVLELLSAAAIGMVHLSRFAEDLIFFNTGEAGFVELS-DRVTSGSSLMPQKKNP  286 (457)
T ss_dssp             CHHHHHHHHTCSSBCSCHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHTSTTTCCEECC-GGGCBCCTTCTTCCBC
T ss_pred             CHHHHHHHcCCCCCCCChHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCceecc-CCCCCCCCCCCCCCCc
Confidence            468899999998654 55579999999999999999999999999999999999  8966543 2224899999999999


Q ss_pred             hHHHHHHHHHHHHHHHhHHHHHHhhhhHhhhcccccCCCCCCccccchhhhhhccCCcchhhhhhccCCCCccccccCCC
Q psy14319        309 MRSERLCSLARFLMSLHQNSLATASTQWMERTLDDSANRFPTKSVFSCVTQVKQHGKENDLVDRIRADPYFAPILNQMPT  388 (486)
Q Consensus       309 ~~~E~~~~~a~~~~g~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~g~~~d~~~~~~~~~~~~~~~~~~~~  388 (486)
                      +.+|.++++|++++|++.+++.+...      ++                    .++++|+                   
T Consensus       287 ~~~E~i~~~a~~v~g~~~~~~~~~~~------~p--------------------~~~~RDl-------------------  321 (457)
T 1tj7_A          287 DALELIRGKCGRVQGALTGMMMTLKG------LP--------------------LAYNKDM-------------------  321 (457)
T ss_dssp             HHHHHHHHTHHHHHHHHHHHHHHHTT------CC--------------------SSCCGGG-------------------
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhc------Cc--------------------HHhhcch-------------------
Confidence            99999999999999999988765321      11                    1233333                   


Q ss_pred             CCCCccccCCchhHhhhhhhcccchHHHHHHHHHHHHHHHhchhCCeeCHHHHHHHHhccCChhHHHHHHHHHHHcCCCh
Q psy14319        389 LLDPKSFYGRAPEQQRLSAKGIHTLSESFLTTDCLLITLQNVLEGLVVYPKVIQRHIDQELPFMATENIIMAMVKAGGDR  468 (486)
Q Consensus       389 ~~~p~~~~~~~~~q~~~~~~~~~~l~~~~~~~~~~l~~~~~~l~~l~v~~~~m~~~l~~~~~~~~a~~~~~~L~~~g~~f  468 (486)
                                   |     ++|..+++++.++..++..+..|+++|+||+++|+++++  .+++++|++++.||++|+||
T Consensus       322 -------------~-----~~~~~l~~s~~~~~~~l~~~~~~l~gl~vn~~~m~~~l~--~~~~~at~l~~~Lv~~G~~~  381 (457)
T 1tj7_A          322 -------------Q-----EDKEGLFDALDTWLDCLHMAALVLDGIQVKRPRCQEAAQ--QGYANATELADYLVAKGVPF  381 (457)
T ss_dssp             -------------G-----GHHHHHHHHHHHHHHHHHHHHHHHTTCEECHHHHHHHHT--STTTTHHHHHHHHHHTTCCH
T ss_pred             -------------h-----hHHhHHHHHHHHHHHHHHHHHHHHccCEECHHHHHHHHh--cCCchHHHHHHHHHHcCCCH
Confidence                         1     135689999999999999999999999999999999995  46899999999999999999


Q ss_pred             HHHHHHHHHHHHHhhhc
Q psy14319        469 QVCHEKIRVLSHQAGAQ  485 (486)
Q Consensus       469 r~Ah~~v~~~~~~a~~~  485 (486)
                      |+||++|++++++|.++
T Consensus       382 r~Ay~~v~~~~~~a~~~  398 (457)
T 1tj7_A          382 REAHHIVGEAVVEAIRQ  398 (457)
T ss_dssp             HHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHH
Confidence            99999999999998653

>2e9f_A Argininosuccinate lyase; alpha helix bundle; HET: ARG; 2.80A {Thermus thermophilus}

Probab=99.89  E-value=5.5e-24  Score=225.98  Aligned_cols=190  Identities=19%  Similarity=0.172  Sum_probs=160.8

Q ss_pred             HHHHHHHHHHcCCCCCc-cccccccCccHHHHHHHHHHHHHHHHHHHHHHHHHHhh--hhhccccccCCCCcCcCCCCCC
Q psy14319        230 KALDRLVTKKAGFTSSH-IITGQTYSRKVDVIVTGVLSSLGASIHKLATDLRLLAH--MKEIEEPFESTQIGSSAMAYKR  306 (486)
Q Consensus       230 ~~i~~~lA~~LGf~~a~-~~~~~~~~rd~~~e~~~~l~~~~~~l~rla~Dl~l~ss--~~el~~~~~~~~~GSSiMPqKr  306 (486)
                      +..++++++.|||..+. |.++++++||+++|++++++.++++|+|||+||++|++  ||||+.| +...+|||||||||
T Consensus       209 ~~~~~~~a~~LG~~~~~~n~~~~~~~rD~~~e~~~~l~~~a~~L~kia~Dl~ll~s~e~g~iel~-e~~~~GSSiMP~K~  287 (462)
T 2e9f_A          209 PIDRHFTARELGFKAPMRNSLDAVASRDFALEVLSALNIGMLHLSRMAEELILYSTEEFGFVEVP-DAFATGSSIMPQKK  287 (462)
T ss_dssp             CCCHHHHHHHTTCSEECSCHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHTSTTTCCEECC-GGGCEECSSSSSCE
T ss_pred             CCCHHHHHHHhCCCCCCCCcHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCcEEec-CCCCCCCCCCCCCc
Confidence            34578899999999654 55579999999999999999999999999999999999  9966544 22237999999999


Q ss_pred             CchHHHHHHHHHHHHHHHhHHHHHHhhhhHhhhcccccCCCCCCccccchhhhhhccCCcchhhhhhccCCCCccccccC
Q psy14319        307 NPMRSERLCSLARFLMSLHQNSLATASTQWMERTLDDSANRFPTKSVFSCVTQVKQHGKENDLVDRIRADPYFAPILNQM  386 (486)
Q Consensus       307 NP~~~E~~~~~a~~~~g~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~g~~~d~~~~~~~~~~~~~~~~~~  386 (486)
                      ||+.+|.++++|++++|++.+++.+...      ++                    .++++|+                 
T Consensus       288 NP~~~E~i~~~a~~v~g~~~~~~~~~~~------~p--------------------~~~~rDl-----------------  324 (462)
T 2e9f_A          288 NPDILELIRAKAGRVLGAFVGLSAVVKG------LP--------------------LAYNKDL-----------------  324 (462)
T ss_dssp             ECHHHHHHHHTHHHHHHHHHHHHHHHTT------CC--------------------SSBCGGG-----------------
T ss_pred             CCHHHHHHHHHHHHHHHHHHHHHHHHhC------Cc--------------------hHhhhch-----------------
Confidence            9999999999999999999988765321      11                    1233343                 


Q ss_pred             CCCCCCccccCCchhHhhhhhhcccchHHHHHHHHHHHHHHHhchhCCeeCHHHHHHHHhccCChhHHHHHHHHHHHcCC
Q psy14319        387 PTLLDPKSFYGRAPEQQRLSAKGIHTLSESFLTTDCLLITLQNVLEGLVVYPKVIQRHIDQELPFMATENIIMAMVKAGG  466 (486)
Q Consensus       387 ~~~~~p~~~~~~~~~q~~~~~~~~~~l~~~~~~~~~~l~~~~~~l~~l~v~~~~m~~~l~~~~~~~~a~~~~~~L~~~g~  466 (486)
                                     |+     .|..+++++.++..++..+..++++|+||+++|+++++  .+++++|++++.||++|+
T Consensus       325 ---------------~~-----~~~~l~~s~~~~~~~l~~~~~~l~gl~vn~e~m~~~l~--~~~~~at~l~~~Lv~~G~  382 (462)
T 2e9f_A          325 ---------------QE-----DKEPLLDALATYRDSLRLLAALLPGLKWRRERMWRAAE--GGYTLATELADYLAEKGL  382 (462)
T ss_dssp             ---------------GG-----GHHHHHHHHHHHHHHHHHHHHHGGGCEECHHHHHHHHS--CSSTTHHHHHHHHHHHTC
T ss_pred             ---------------hh-----hHhHHHHHHHHHHHHHHHHHHHhCcCEECHHHHHHHHh--cCccHHHHHHHHHHHcCC
Confidence                           11     24578999999999999999999999999999999997  468899999999999999


Q ss_pred             ChHHHHHHHHHHHHHhhhc
Q psy14319        467 DRQVCHEKIRVLSHQAGAQ  485 (486)
Q Consensus       467 ~fr~Ah~~v~~~~~~a~~~  485 (486)
                      |||+||++|++++++|.++
T Consensus       383 ~~r~ay~~v~~~~~~a~~~  401 (462)
T 2e9f_A          383 PFREAHHVVGRLVRRLVEE  401 (462)
T ss_dssp             CSHHHHHHHHHHHHHHHHT
T ss_pred             ChHHHHHHHHHHHHHHHHH
Confidence            9999999999999998653

>1k7w_A Delta 2 crystallin; eye lens protein, argininosuccinate lyase, enzyme mechanism; HET: AS1; 1.96A {Anas platyrhynchos} SCOP: a.127.1.1 PDB: 1hy1_A 1tju_A 1auw_A 1tjv_A 1tjw_A* 1u16_A* 1u15_A* 1dcn_A* 1xwo_A 1hy0_A 1i0a_A 1aos_A 1k62_A

Probab=99.89  E-value=5.7e-24  Score=226.20  Aligned_cols=189  Identities=17%  Similarity=0.173  Sum_probs=159.8

Q ss_pred             HHHHHHHHHHcCCCCCc-cccccccCccHHHHHHHHHHHHHHHHHHHHHHHHHHhh--hhhccccccCCCCcCcCCCCCC
Q psy14319        230 KALDRLVTKKAGFTSSH-IITGQTYSRKVDVIVTGVLSSLGASIHKLATDLRLLAH--MKEIEEPFESTQIGSSAMAYKR  306 (486)
Q Consensus       230 ~~i~~~lA~~LGf~~a~-~~~~~~~~rd~~~e~~~~l~~~~~~l~rla~Dl~l~ss--~~el~~~~~~~~~GSSiMPqKr  306 (486)
                      +..++++++.|||..+. |.++++++||+++|++++++.++++|+|||+||++|++  ||||+.| +...+|||||||||
T Consensus       212 ~~~~~~la~~LG~~~~~~n~~~~~~~rD~~~e~~~~l~~la~~L~kia~Dl~ll~s~e~g~iel~-e~~~~GSSiMP~K~  290 (468)
T 1k7w_A          212 DIDREMLRSELEFASISLNSMDAISERDFVVEFLSFATLLMIHLSKMAEDLIIYSTSEFGFLTLS-DAFSTGASLMPQKK  290 (468)
T ss_dssp             CCCHHHHHHHHTCSEECSCHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHTSTTTCCEECC-GGGCEEETTEEEEE
T ss_pred             CCChHHHHHHcCCCCCCCChHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCceecc-CCCCCCCCCCCCCC
Confidence            34578899999999654 55579999999999999999999999999999999999  8966544 22237999999999


Q ss_pred             CchHHHHHHHHHHHHHHHhHHHHHHhhhhHhhhcccccCCCCCCccccchhhhhhccCCcchhhhhhccCCCCccccccC
Q psy14319        307 NPMRSERLCSLARFLMSLHQNSLATASTQWMERTLDDSANRFPTKSVFSCVTQVKQHGKENDLVDRIRADPYFAPILNQM  386 (486)
Q Consensus       307 NP~~~E~~~~~a~~~~g~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~g~~~d~~~~~~~~~~~~~~~~~~  386 (486)
                      ||+.+|.++++|++++|++.+++.+...      ++                    .++++|+                 
T Consensus       291 NP~~~E~i~~~a~~v~g~~~~~~~~~~~------~p--------------------~~~~rDl-----------------  327 (468)
T 1k7w_A          291 NPDSLELIRSKAGRVFGRLASILMVLKG------LP--------------------STYNKDL-----------------  327 (468)
T ss_dssp             ECHHHHHHHHHHHHHHHHHHHHHHHHTT------CC--------------------SSCCGGG-----------------
T ss_pred             CcHHHHHHHHHHHHHHHHHHHHHHHHhC------Cc--------------------hHhhhhh-----------------
Confidence            9999999999999999999988765321      11                    1233343                 


Q ss_pred             CCCCCCccccCCchhHhhhhhhcccchHHHHHHHHHHHHHHHhchhCCeeCHHHHHHHHhccCChhHHHHHHHHHHHcCC
Q psy14319        387 PTLLDPKSFYGRAPEQQRLSAKGIHTLSESFLTTDCLLITLQNVLEGLVVYPKVIQRHIDQELPFMATENIIMAMVKAGG  466 (486)
Q Consensus       387 ~~~~~p~~~~~~~~~q~~~~~~~~~~l~~~~~~~~~~l~~~~~~l~~l~v~~~~m~~~l~~~~~~~~a~~~~~~L~~~g~  466 (486)
                                     |+     .|..+++++.++..++..+..++++|+||+++|+++++.  + +++|++++.||++|+
T Consensus       328 ---------------~~-----~~~~l~~s~~~~~~~l~~~~~~l~gl~vn~e~m~~~l~~--~-~~at~l~~~Lv~~G~  384 (468)
T 1k7w_A          328 ---------------QE-----DKEAVFDVVDTLTAVLQVATGVISTLQISKENMEKALTP--E-MLATDLALYLVRKGV  384 (468)
T ss_dssp             ---------------GG-----HHHHHHHHHHHHHHHHHHHHHHHHHCEECHHHHHHTCCG--G-GGHHHHHHHHHTTTC
T ss_pred             ---------------hh-----hHhHHHHHHHHHHHHHHHHHHHhCCCEECHHHHHHHhhC--C-ChHHHHHHHHHHcCC
Confidence                           11     245789999999999999999999999999999999974  4 899999999999999


Q ss_pred             ChHHHHHHHHHHHHHhhhc
Q psy14319        467 DRQVCHEKIRVLSHQAGAQ  485 (486)
Q Consensus       467 ~fr~Ah~~v~~~~~~a~~~  485 (486)
                      |||+||++|++++++|.++
T Consensus       385 ~~r~ay~~v~~~~~~a~~~  403 (468)
T 1k7w_A          385 PFRQAHTASGKAVHLAETK  403 (468)
T ss_dssp             CHHHHHHHHHHHHHHHHTT
T ss_pred             CHHHHHHHHHHHHHHHHHh
Confidence            9999999999999998653

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	486
d1yfma_	459	a.127.1.1 (A:) Fumarase {Baker's yeast (Saccharomy	2e-18
d1yfma_	459	a.127.1.1 (A:) Fumarase {Baker's yeast (Saccharomy	7e-13
d1fuoa_	456	a.127.1.1 (A:) Fumarase {Escherichia coli [TaxId:	3e-17
d1fuoa_	456	a.127.1.1 (A:) Fumarase {Escherichia coli [TaxId:	3e-11
d1c3ca_	429	a.127.1.1 (A:) Adenylosuccinate lyase {Thermotoga	7e-16
d1c3ca_	429	a.127.1.1 (A:) Adenylosuccinate lyase {Thermotoga	1e-14
d1c3ca_	429	a.127.1.1 (A:) Adenylosuccinate lyase {Thermotoga	2e-05
d1vdka_	460	a.127.1.1 (A:) Fumarase {Thermus thermophilus [Tax	2e-12
d1vdka_	460	a.127.1.1 (A:) Fumarase {Thermus thermophilus [Tax	1e-06
d1dofa_	402	a.127.1.1 (A:) Adenylosuccinate lyase {Archaeon Py	6e-11
d1dofa_	402	a.127.1.1 (A:) Adenylosuccinate lyase {Archaeon Py	5e-08
d1dofa_	402	a.127.1.1 (A:) Adenylosuccinate lyase {Archaeon Py	6e-04
d1j3ua_	462	a.127.1.1 (A:) L-aspartate ammonia lyase {Bacillus	2e-09
d1j3ua_	462	a.127.1.1 (A:) L-aspartate ammonia lyase {Bacillus	2e-04
d1jswa_	459	a.127.1.1 (A:) L-aspartate ammonia lyase {Escheric	2e-07
d1tj7a_	455	a.127.1.1 (A:) Argininosuccinate lyase/delta-cryst	4e-05
d1tj7a_	455	a.127.1.1 (A:) Argininosuccinate lyase/delta-cryst	5e-05

>d1yfma_ a.127.1.1 (A:) Fumarase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 459

class: All alpha proteins
fold: L-aspartase-like
superfamily: L-aspartase-like
family: L-aspartase/fumarase
domain: Fumarase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 85.2 bits (210), Expect = 2e-18
 Identities = 30/139 (21%), Positives = 50/139 (35%), Gaps = 3/139 (2%)

Query: 63  FNSSHIITGQTYSRKVDVIVTGVLSSLGASIHKLATDLRLLAHMKE---IEEPFESTQIG 119
           F ++        +    V  +G L++L  S+ K+A D+R L         E      + G
Sbjct: 257 FQTAPNRFEALAAHDAIVECSGALNTLACSLFKIAQDIRYLGSGPRCGYHELMLPENEPG 316

Query: 120 SSAMAYKRNPMRSERLCSLARFLMSLHQNSLATASTQWMERTLDDSANRRLTLSESFLTT 179
           SS M  K NP ++E L  +   +M  +       S    E  +         L+   L T
Sbjct: 317 SSIMPGKVNPTQNEALTQVCVQVMGNNAAITFAGSQGQFELNVFKPVMIANLLNSIRLIT 376

Query: 180 DCLLITLQNVLEGLVVYPK 198
           D       + +EG+     
Sbjct: 377 DAAYSFRVHCVEGIKANEP 395

>d1yfma_ a.127.1.1 (A:) Fumarase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 459

class: All alpha proteins
fold: L-aspartase-like
superfamily: L-aspartase-like
family: L-aspartase/fumarase
domain: Fumarase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 67.8 bits (165), Expect = 7e-13
 Identities = 32/158 (20%), Positives = 56/158 (35%), Gaps = 5/158 (3%)

Query: 223 PGDGDKVKALDRLVTKKAGFTSSHIITGQTYSRKVDVIVTGVLSSLGASIHKLATDLRLL 282
           PG   K+       T     T+ +       +    V  +G L++L  S+ K+A D+R L
Sbjct: 239 PGFDVKIAEQISKETGLKFQTAPNRFE-ALAAHDAIVECSGALNTLACSLFKIAQDIRYL 297

Query: 283 AHMKE---IEEPFESTQIGSSAMAYKRNPMRSERLCSLARFLMSLHQNSLATASTQWMER 339
                    E      + GSS M  K NP ++E L  +   +M  +       S    E 
Sbjct: 298 GSGPRCGYHELMLPENEPGSSIMPGKVNPTQNEALTQVCVQVMGNNAAITFAGSQGQFEL 357

Query: 340 TLDDSANRFPTKSVFSCVTQVKQHGKENDLVDRIRADP 377
            +          +    +T      + +  V+ I+A+ 
Sbjct: 358 NVFKPVMIANLLNSIRLITDAAYSFRVH-CVEGIKANE 394

>d1fuoa_ a.127.1.1 (A:) Fumarase {Escherichia coli [TaxId: 562]} Length = 456

class: All alpha proteins
fold: L-aspartase-like
superfamily: L-aspartase-like
family: L-aspartase/fumarase
domain: Fumarase
species: Escherichia coli [TaxId: 562]

 Score = 81.3 bits (200), Expect = 3e-17
 Identities = 30/146 (20%), Positives = 49/146 (33%), Gaps = 3/146 (2%)

Query: 56  SIHKKAGFNSSHIITGQTYSRKVDVIVTGVLSSLGASIHKLATDLRLLAHMKEIE---EP 112
           ++   A F ++        +    V   G L  L AS+ K+A D+R LA           
Sbjct: 248 AVITCAPFVTAPNKFEALATCDALVQAHGALKGLAASLMKIANDVRWLASGPRCGIGEIS 307

Query: 113 FESTQIGSSAMAYKRNPMRSERLCSLARFLMSLHQNSLATASTQWMERTLDDSANRRLTL 172
               + GSS M  K NP + E L  L   +M          ++   E  +         L
Sbjct: 308 IPENEPGSSIMPGKVNPTQCEALTMLCCQVMGNDVAINMGGASGNFELNVFRPMVIHNFL 367

Query: 173 SESFLTTDCLLITLQNVLEGLVVYPK 198
               L  D +    ++   G+    +
Sbjct: 368 QSVRLLADGMESFNKHCAVGIEPNRE 393

>d1fuoa_ a.127.1.1 (A:) Fumarase {Escherichia coli [TaxId: 562]} Length = 456

class: All alpha proteins
fold: L-aspartase-like
superfamily: L-aspartase-like
family: L-aspartase/fumarase
domain: Fumarase
species: Escherichia coli [TaxId: 562]

 Score = 62.8 bits (152), Expect = 3e-11
 Identities = 25/106 (23%), Positives = 37/106 (34%), Gaps = 3/106 (2%)

Query: 242 FTSSHIITGQTYSRKVDVIVTGVLSSLGASIHKLATDLRLLAHMKEIE---EPFESTQIG 298
           F ++        +    V   G L  L AS+ K+A D+R LA               + G
Sbjct: 255 FVTAPNKFEALATCDALVQAHGALKGLAASLMKIANDVRWLASGPRCGIGEISIPENEPG 314

Query: 299 SSAMAYKRNPMRSERLCSLARFLMSLHQNSLATASTQWMERTLDDS 344
           SS M  K NP + E L  L   +M          ++   E  +   
Sbjct: 315 SSIMPGKVNPTQCEALTMLCCQVMGNDVAINMGGASGNFELNVFRP 360

>d1c3ca_ a.127.1.1 (A:) Adenylosuccinate lyase {Thermotoga maritima [TaxId: 2336]} Length = 429

class: All alpha proteins
fold: L-aspartase-like
superfamily: L-aspartase-like
family: L-aspartase/fumarase
domain: Adenylosuccinate lyase
species: Thermotoga maritima [TaxId: 2336]

 Score = 77.2 bits (189), Expect = 7e-16
 Identities = 37/138 (26%), Positives = 65/138 (47%), Gaps = 3/138 (2%)

Query: 63  FNSSHIITGQTYSRKVDVIVTGVLSSLGASIHKLATDLRLLAHMK--EIEEPFESTQIGS 120
                 ++ Q   R         L+ + A I ++A ++R L   +  E+EEPF   Q GS
Sbjct: 202 GLKPEPVSTQVVPRDRHAFYLSTLAIVAAGIERIAVEIRHLQRTEVLEVEEPFRKGQRGS 261

Query: 121 SAMAYKRNPMRSERLCSLARFLMSLHQNSLATASTQWMERTLDDSANRRLTLSESFLTTD 180
           SAM +K+NP+  ERL  L+R + + + +        W ER +  S+  R    ++  T  
Sbjct: 262 SAMPHKKNPITCERLTGLSRMMRA-YVDPSLENIALWHERDISHSSVERYVFPDATQTLY 320

Query: 181 CLLITLQNVLEGLVVYPK 198
            +++T  NV+  + V  +
Sbjct: 321 YMIVTATNVVRNMKVNEE 338

>d1c3ca_ a.127.1.1 (A:) Adenylosuccinate lyase {Thermotoga maritima [TaxId: 2336]} Length = 429

class: All alpha proteins
fold: L-aspartase-like
superfamily: L-aspartase-like
family: L-aspartase/fumarase
domain: Adenylosuccinate lyase
species: Thermotoga maritima [TaxId: 2336]

 Score = 73.4 bits (179), Expect = 1e-14
 Identities = 31/109 (28%), Positives = 51/109 (46%), Gaps = 3/109 (2%)

Query: 242 FTSSHIITGQTYSRKVDVIVTGVLSSLGASIHKLATDLRLLAHMK--EIEEPFESTQIGS 299
                 ++ Q   R         L+ + A I ++A ++R L   +  E+EEPF   Q GS
Sbjct: 202 GLKPEPVSTQVVPRDRHAFYLSTLAIVAAGIERIAVEIRHLQRTEVLEVEEPFRKGQRGS 261

Query: 300 SAMAYKRNPMRSERLCSLARFLMSLHQNSLATASTQWMERTLDDSANRF 348
           SAM +K+NP+  ERL  L+R + + + +        W ER +  S+   
Sbjct: 262 SAMPHKKNPITCERLTGLSRMMRA-YVDPSLENIALWHERDISHSSVER 309

>d1c3ca_ a.127.1.1 (A:) Adenylosuccinate lyase {Thermotoga maritima [TaxId: 2336]} Length = 429

class: All alpha proteins
fold: L-aspartase-like
superfamily: L-aspartase-like
family: L-aspartase/fumarase
domain: Adenylosuccinate lyase
species: Thermotoga maritima [TaxId: 2336]

 Score = 44.9 bits (105), Expect = 2e-05
 Identities = 7/58 (12%), Positives = 30/58 (51%)

Query: 428 QNVLEGLVVYPKVIQRHIDQELPFMATENIIMAMVKAGGDRQVCHEKIRVLSHQAGAQ 485
            NV+  + V  + ++++ID     + ++ +++ +++ G  R+  ++ ++  + +    
Sbjct: 327 TNVVRNMKVNEERMKKNIDLTKGLVFSQRVLLKLIEKGLTRKEAYDIVQRNALKTWNS 384

>d1vdka_ a.127.1.1 (A:) Fumarase {Thermus thermophilus [TaxId: 274]} Length = 460

class: All alpha proteins
fold: L-aspartase-like
superfamily: L-aspartase-like
family: L-aspartase/fumarase
domain: Fumarase
species: Thermus thermophilus [TaxId: 274]

 Score = 66.7 bits (162), Expect = 2e-12
 Identities = 25/147 (17%), Positives = 48/147 (32%), Gaps = 5/147 (3%)

Query: 57  IHKKAGFNSSHIIT--GQTYSRKVDVIVTGVLSSLGASIHKLATDLRLLAHMKEIE---E 111
           + ++ G              +    V V G + +L  ++ K+  D+R LA          
Sbjct: 247 LAEETGLPFRVAENRFAALAAHDELVNVMGAIRTLAGALMKIGNDVRWLASGPYAGIGEI 306

Query: 112 PFESTQIGSSAMAYKRNPMRSERLCSLARFLMSLHQNSLATASTQWMERTLDDSANRRLT 171
              + + GSS M  K NP + E L  +   +           S    +  +        T
Sbjct: 307 TIPANEPGSSIMPGKVNPTQVEALTMVVVRVYGNDHTVAFAGSQGNFQLNVYKPVMAYST 366

Query: 172 LSESFLTTDCLLITLQNVLEGLVVYPK 198
           L    L  D +     ++ +G+    +
Sbjct: 367 LESINLLADAVASFDAHLAQGIEPNLE 393

>d1vdka_ a.127.1.1 (A:) Fumarase {Thermus thermophilus [TaxId: 274]} Length = 460

class: All alpha proteins
fold: L-aspartase-like
superfamily: L-aspartase-like
family: L-aspartase/fumarase
domain: Fumarase
species: Thermus thermophilus [TaxId: 274]

 Score = 48.3 bits (114), Expect = 1e-06
 Identities = 20/114 (17%), Positives = 37/114 (32%), Gaps = 5/114 (4%)

Query: 236 VTKKAGFTSSHIIT--GQTYSRKVDVIVTGVLSSLGASIHKLATDLRLLAHMKEIE---E 290
           + ++ G              +    V V G + +L  ++ K+  D+R LA          
Sbjct: 247 LAEETGLPFRVAENRFAALAAHDELVNVMGAIRTLAGALMKIGNDVRWLASGPYAGIGEI 306

Query: 291 PFESTQIGSSAMAYKRNPMRSERLCSLARFLMSLHQNSLATASTQWMERTLDDS 344
              + + GSS M  K NP + E L  +   +           S    +  +   
Sbjct: 307 TIPANEPGSSIMPGKVNPTQVEALTMVVVRVYGNDHTVAFAGSQGNFQLNVYKP 360

>d1dofa_ a.127.1.1 (A:) Adenylosuccinate lyase {Archaeon Pyrobaculum aerophilum [TaxId: 13773]} Length = 402

class: All alpha proteins
fold: L-aspartase-like
superfamily: L-aspartase-like
family: L-aspartase/fumarase
domain: Adenylosuccinate lyase
species: Archaeon Pyrobaculum aerophilum [TaxId: 13773]

 Score = 61.6 bits (148), Expect = 6e-11
 Identities = 15/66 (22%), Positives = 32/66 (48%)

Query: 417 FLTTDCLLITLQNVLEGLVVYPKVIQRHIDQELPFMATENIIMAMVKAGGDRQVCHEKIR 476
            L  D +L +   VL+ + +  + I  ++ + LP++ TE  +  M+K G  R   ++K +
Sbjct: 316 LLALDEILTSALRVLKNVYIDEERITENLQKALPYILTEFHMNRMIKEGASRAEAYKKAK 375

Query: 477 VLSHQA 482
            +    
Sbjct: 376 EVKALT 381

>d1dofa_ a.127.1.1 (A:) Adenylosuccinate lyase {Archaeon Pyrobaculum aerophilum [TaxId: 13773]} Length = 402

class: All alpha proteins
fold: L-aspartase-like
superfamily: L-aspartase-like
family: L-aspartase/fumarase
domain: Adenylosuccinate lyase
species: Archaeon Pyrobaculum aerophilum [TaxId: 13773]

 Score = 52.7 bits (125), Expect = 5e-08
 Identities = 38/107 (35%), Positives = 58/107 (54%), Gaps = 3/107 (2%)

Query: 92  SIHKLATDLRLLAHMKEIEEPFESTQIGSSAMAYKRNPMRSERLCSLARFLMSLHQNSLA 151
              +LA ++R L    EI E  E    GSSAM +K NP  SER+ SLAR++ +L   +  
Sbjct: 235 VFERLAVEIREL-SRPEIGEVVEGGG-GSSAMPHKANPTASERIVSLARYVRALTHVAFE 292

Query: 152 TASTQWMERTLDDSANRRLTLSESFLTTDCLLITLQNVLEGLVVYPK 198
             +  W ER L +SAN R+ + E+ L  D +L +   VL+ + +  +
Sbjct: 293 NVA-LWHERDLTNSANERVWIPEALLALDEILTSALRVLKNVYIDEE 338

>d1dofa_ a.127.1.1 (A:) Adenylosuccinate lyase {Archaeon Pyrobaculum aerophilum [TaxId: 13773]} Length = 402

class: All alpha proteins
fold: L-aspartase-like
superfamily: L-aspartase-like
family: L-aspartase/fumarase
domain: Adenylosuccinate lyase
species: Archaeon Pyrobaculum aerophilum [TaxId: 13773]

 Score = 40.0 bits (92), Expect = 6e-04
 Identities = 24/67 (35%), Positives = 34/67 (50%), Gaps = 2/67 (2%)

Query: 271 SIHKLATDLRLLAHMKEIEEPFESTQIGSSAMAYKRNPMRSERLCSLARFLMSLHQNSLA 330
              +LA ++R L    EI E  E    GSSAM +K NP  SER+ SLAR++ +L   +  
Sbjct: 235 VFERLAVEIREL-SRPEIGEVVEGGG-GSSAMPHKANPTASERIVSLARYVRALTHVAFE 292

Query: 331 TASTQWM 337
             +    
Sbjct: 293 NVALWHE 299

>d1j3ua_ a.127.1.1 (A:) L-aspartate ammonia lyase {Bacillus sp., ym55-1 [TaxId: 1409]} Length = 462

class: All alpha proteins
fold: L-aspartase-like
superfamily: L-aspartase-like
family: L-aspartase/fumarase
domain: L-aspartate ammonia lyase
species: Bacillus sp., ym55-1 [TaxId: 1409]

 Score = 57.2 bits (137), Expect = 2e-09
 Identities = 27/139 (19%), Positives = 51/139 (36%), Gaps = 3/139 (2%)

Query: 63  FNSSHIITGQTYSRKVDVIVTGVLSSLGASIHKLATDLRLLAHMKE---IEEPFESTQIG 119
             S+  +   T +      V+  L     ++ K+A DLRL+A        E    + Q G
Sbjct: 254 LRSAQHLVDATQNTDCYTEVSSALKVCMINMSKIANDLRLMASGPRAGLSEIVLPARQPG 313

Query: 120 SSAMAYKRNPMRSERLCSLARFLMSLHQNSLATASTQWMERTLDDSANRRLTLSESFLTT 179
           SS M  K NP+  E +  +A  +        + +     E  + +       +    + T
Sbjct: 314 SSIMPGKVNPVMPEVMNQVAFQVFGNDLTITSASEAGQFELNVMEPVLFFNLIQSISIMT 373

Query: 180 DCLLITLQNVLEGLVVYPK 198
           +      +N L+G+    +
Sbjct: 374 NVFKSFTENCLKGIKANEE 392

>d1j3ua_ a.127.1.1 (A:) L-aspartate ammonia lyase {Bacillus sp., ym55-1 [TaxId: 1409]} Length = 462

class: All alpha proteins
fold: L-aspartase-like
superfamily: L-aspartase-like
family: L-aspartase/fumarase
domain: L-aspartate ammonia lyase
species: Bacillus sp., ym55-1 [TaxId: 1409]

 Score = 41.4 bits (96), Expect = 2e-04
 Identities = 31/139 (22%), Positives = 53/139 (38%), Gaps = 4/139 (2%)

Query: 242 FTSSHIITGQTYSRKVDVIVTGVLSSLGASIHKLATDLRLLAHMKE---IEEPFESTQIG 298
             S+  +   T +      V+  L     ++ K+A DLRL+A        E    + Q G
Sbjct: 254 LRSAQHLVDATQNTDCYTEVSSALKVCMINMSKIANDLRLMASGPRAGLSEIVLPARQPG 313

Query: 299 SSAMAYKRNPMRSERLCSLARFLMSLHQNSLATASTQWMERTLDDSANRFPTKSVFSCVT 358
           SS M  K NP+  E +  +A  +        + +     E  + +    F      S +T
Sbjct: 314 SSIMPGKVNPVMPEVMNQVAFQVFGNDLTITSASEAGQFELNVMEPVLFFNLIQSISIMT 373

Query: 359 QVKQHGKENDLVDRIRADP 377
            V +   EN  +  I+A+ 
Sbjct: 374 NVFKSFTEN-CLKGIKANE 391

>d1jswa_ a.127.1.1 (A:) L-aspartate ammonia lyase {Escherichia coli [TaxId: 562]} Length = 459

class: All alpha proteins
fold: L-aspartase-like
superfamily: L-aspartase-like
family: L-aspartase/fumarase
domain: L-aspartate ammonia lyase
species: Escherichia coli [TaxId: 562]

 Score = 51.0 bits (121), Expect = 2e-07
 Identities = 25/139 (17%), Positives = 47/139 (33%), Gaps = 3/139 (2%)

Query: 63  FNSSHIITGQTYSRKVDVIVTGVLSSLGASIHKLATDLRLLAHMKEIEE---PFESTQIG 119
              +  +   T      V+V G L  L   + K+  DLRLL+               Q G
Sbjct: 261 CVPAEDLIEATSDCGAYVMVHGALKRLAVKMSKICNDLRLLSSGPRAGLNEINLPELQAG 320

Query: 120 SSAMAYKRNPMRSERLCSLARFLMSLHQNSLATASTQWMERTLDDSANRRLTLSESFLTT 179
           SS M  K NP+  E +  +   ++         A    ++  + +    +       + T
Sbjct: 321 SSIMPAKVNPVVPEVVNQVCFKVIGNDTTVTMAAEAGQLQLNVMEPVIGQAMFESVHILT 380

Query: 180 DCLLITLQNVLEGLVVYPK 198
           +     L+  + G+    +
Sbjct: 381 NACYNLLEKCINGITANKE 399

>d1tj7a_ a.127.1.1 (A:) Argininosuccinate lyase/delta-crystallin {Escherichia coli [TaxId: 562]} Length = 455

class: All alpha proteins
fold: L-aspartase-like
superfamily: L-aspartase-like
family: L-aspartase/fumarase
domain: Argininosuccinate lyase/delta-crystallin
species: Escherichia coli [TaxId: 562]

 Score = 43.7 bits (102), Expect = 4e-05
 Identities = 15/111 (13%), Positives = 31/111 (27%), Gaps = 3/111 (2%)

Query: 74  YSRKVDVIVTGVLSSLGASIHKLATDLRLLAHM-KEIEEPFESTQIGSSAMAYKRNPMRS 132
             R   + +    +     + + A DL           E  +    GSS M  K+NP   
Sbjct: 228 SDRDHVLELLSAAAIGMVHLSRFAEDLIFFNTGEAGFVELSDRVTSGSSLMPQKKNPDAL 287

Query: 133 ERLCSLARFLMSLHQNSLATAS--TQWMERTLDDSANRRLTLSESFLTTDC 181
           E +      +       + T         + + +         +++L    
Sbjct: 288 ELIRGKCGRVQGALTGMMMTLKGLPLAYNKDMQEDKEGLFDALDTWLDCLH 338

>d1tj7a_ a.127.1.1 (A:) Argininosuccinate lyase/delta-crystallin {Escherichia coli [TaxId: 562]} Length = 455

class: All alpha proteins
fold: L-aspartase-like
superfamily: L-aspartase-like
family: L-aspartase/fumarase
domain: Argininosuccinate lyase/delta-crystallin
species: Escherichia coli [TaxId: 562]

 Score = 43.3 bits (101), Expect = 5e-05
 Identities = 18/116 (15%), Positives = 34/116 (29%), Gaps = 2/116 (1%)

Query: 236 VTKKAGFTSSHIITG-QTYSRKVDVIVTGVLSSLGASIHKLATDLRLLAHM-KEIEEPFE 293
           +    GF S+   +      R   + +    +     + + A DL           E  +
Sbjct: 210 LAGWLGFASATRNSLDSVSDRDHVLELLSAAAIGMVHLSRFAEDLIFFNTGEAGFVELSD 269

Query: 294 STQIGSSAMAYKRNPMRSERLCSLARFLMSLHQNSLATASTQWMERTLDDSANRFP 349
               GSS M  K+NP   E +      +       + T     +    D   ++  
Sbjct: 270 RVTSGSSLMPQKKNPDALELIRGKCGRVQGALTGMMMTLKGLPLAYNKDMQEDKEG 325

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	486
d1f1oa_	408	Adenylosuccinate lyase {Bacillus subtilis [TaxId:	100.0
d1c3ca_	429	Adenylosuccinate lyase {Thermotoga maritima [TaxId	100.0
d1tj7a_	455	Argininosuccinate lyase/delta-crystallin {Escheric	100.0
d1dofa_	402	Adenylosuccinate lyase {Archaeon Pyrobaculum aerop	100.0
d1re5a_	448	3-carboxy-cis,cis-muconate cycloisomerase (CMLE) {	100.0
d1k62b_	459	Argininosuccinate lyase/delta-crystallin {Human (H	100.0
d1q5na_	444	3-carboxy-cis,cis-muconate cycloisomerase (CMLE) {	99.98
d1tj7a_	455	Argininosuccinate lyase/delta-crystallin {Escheric	99.97
d1k62b_	459	Argininosuccinate lyase/delta-crystallin {Human (H	99.97
d1tjva_	449	Argininosuccinate lyase/delta-crystallin {Domestic	99.97
d1f1oa_	408	Adenylosuccinate lyase {Bacillus subtilis [TaxId:	99.97
d1c3ca_	429	Adenylosuccinate lyase {Thermotoga maritima [TaxId	99.97
d1re5a_	448	3-carboxy-cis,cis-muconate cycloisomerase (CMLE) {	99.97
d1vdka_	460	Fumarase {Thermus thermophilus [TaxId: 274]}	99.96
d1yfma_	459	Fumarase {Baker's yeast (Saccharomyces cerevisiae)	99.96
d1tjva_	449	Argininosuccinate lyase/delta-crystallin {Domestic	99.96
d1fuoa_	456	Fumarase {Escherichia coli [TaxId: 562]}	99.96
d1q5na_	444	3-carboxy-cis,cis-muconate cycloisomerase (CMLE) {	99.96
d1vdka_	460	Fumarase {Thermus thermophilus [TaxId: 274]}	99.96
d1jswa_	459	L-aspartate ammonia lyase {Escherichia coli [TaxId	99.96
d1fuoa_	456	Fumarase {Escherichia coli [TaxId: 562]}	99.96
d1yfma_	459	Fumarase {Baker's yeast (Saccharomyces cerevisiae)	99.96
d1j3ua_	462	L-aspartate ammonia lyase {Bacillus sp., ym55-1 [T	99.95
d1jswa_	459	L-aspartate ammonia lyase {Escherichia coli [TaxId	99.95
d1dofa_	402	Adenylosuccinate lyase {Archaeon Pyrobaculum aerop	99.95
d1j3ua_	462	L-aspartate ammonia lyase {Bacillus sp., ym55-1 [T	99.95

>d1f1oa_ a.127.1.1 (A:) Adenylosuccinate lyase {Bacillus subtilis [TaxId: 1423]}

class: All alpha proteins
fold: L-aspartase-like
superfamily: L-aspartase-like
family: L-aspartase/fumarase
domain: Adenylosuccinate lyase
species: Bacillus subtilis [TaxId: 1423]

Probab=100.00  E-value=1.5e-34  Score=300.57  Aligned_cols=193  Identities=25%  Similarity=0.431  Sum_probs=174.9

Q ss_pred             HHHHHHHHHHHcCCCCCccccccccCccHHHHHHHHHHHHHHHHHHHHHHHHHHhh--hhhccccccCCCCcCcCCCCCC
Q psy14319        229 VKALDRLVTKKAGFTSSHIITGQTYSRKVDVIVTGVLSSLGASIHKLATDLRLLAH--MKEIEEPFESTQIGSSAMAYKR  306 (486)
Q Consensus       229 ~~~i~~~lA~~LGf~~a~~~~~~~~~rd~~~e~~~~l~~~~~~l~rla~Dl~l~ss--~~el~~~~~~~~~GSSiMPqKr  306 (486)
                      .+..++.+++.|||..+ +..+++++||+++|++++++.++++++|||+|+++|++  ++++.|+++++++|||||||||
T Consensus       183 ~~~~~~~~~~~lg~~~~-~~~~~~~~rd~~~e~~~~l~~la~~l~kia~Dl~~~~s~~~~~~~e~~~~~~~GSSiMP~K~  261 (408)
T d1f1oa_         183 DPFVEQYVCEKLGLKAA-PISTQTLQRDRHADYMATLALIATSIEKFAVEIRGLQKSETREVEEFFAKGQKGSSAMPHKR  261 (408)
T ss_pred             ChhHHHHHHHHhcCcCC-CchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccceeeecccCCCCCcccccccc
Confidence            36778889999999764 55678899999999999999999999999999999998  8899888899999999999999


Q ss_pred             CchHHHHHHHHHHHHHHHhHHHHHHhhhhHhhhcccccCCCCCCccccchhhhhhccCCcchhhhhhccCCCCccccccC
Q psy14319        307 NPMRSERLCSLARFLMSLHQNSLATASTQWMERTLDDSANRFPTKSVFSCVTQVKQHGKENDLVDRIRADPYFAPILNQM  386 (486)
Q Consensus       307 NP~~~E~~~~~a~~~~g~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~g~~~d~~~~~~~~~~~~~~~~~~  386 (486)
                      ||+.+|+++++++.+.|...+++.+ ...++|||+.+|.                                         
T Consensus       262 NP~~~E~v~~~~~~~~g~~~~~~~~-~~~~~erd~~~~~-----------------------------------------  299 (408)
T d1f1oa_         262 NPIGSENMTGMARVIRGYMMTAYEN-VPLWHERDISHSS-----------------------------------------  299 (408)
T ss_pred             cccHHHHHHHHhccchhhHHHHHHh-ccchhhccchhhH-----------------------------------------
Confidence            9999999999999999999877654 5678888875431                                         


Q ss_pred             CCCCCCccccCCchhHhhhhhhcccchHHHHHHHHHHHHHHHhchhCCeeCHHHHHHHHhccCChhHHHHHHHHHHHcCC
Q psy14319        387 PTLLDPKSFYGRAPEQQRLSAKGIHTLSESFLTTDCLLITLQNVLEGLVVYPKVIQRHIDQELPFMATENIIMAMVKAGG  466 (486)
Q Consensus       387 ~~~~~p~~~~~~~~~q~~~~~~~~~~l~~~~~~~~~~l~~~~~~l~~l~v~~~~m~~~l~~~~~~~~a~~~~~~L~~~g~  466 (486)
                                           ..|..+++++.++..++..+..++++++||+++|+++++.+.++++||.+++.||++|+
T Consensus       300 ---------------------~~~~~l~~~~~~~~~~l~~~~~~l~~l~vn~e~m~~nl~~~~~~~~a~~~~~~Lv~~gl  358 (408)
T d1f1oa_         300 ---------------------AERIILPDATIALNYMLNRFSNIVKNLTVFPENMKRNMDRTLGLIYSQRVLLALIDTGL  358 (408)
T ss_pred             ---------------------HHhhcchhHHHHHHHHHHHHHHHhhCCeeCHHHHHHHHHhhcCchHHHHHHHHHHHhCC
Confidence                                 14668999999999999999999999999999999999999999999999999999999


Q ss_pred             ChHHHHHHHHHHHHHhhhc
Q psy14319        467 DRQVCHEKIRVLSHQAGAQ  485 (486)
Q Consensus       467 ~fr~Ah~~v~~~~~~a~~~  485 (486)
                      +||+||++|++++++|.++
T Consensus       359 ~~~~Ah~~v~~~~~~a~~~  377 (408)
T d1f1oa_         359 TREEAYDTVQPKAMEAWEK  377 (408)
T ss_pred             CHHHHHHHHHHHHHHHHHH
Confidence            9999999999999998764

>d1c3ca_ a.127.1.1 (A:) Adenylosuccinate lyase {Thermotoga maritima [TaxId: 2336]}

class: All alpha proteins
fold: L-aspartase-like
superfamily: L-aspartase-like
family: L-aspartase/fumarase
domain: Adenylosuccinate lyase
species: Thermotoga maritima [TaxId: 2336]

Probab=100.00  E-value=3e-34  Score=300.06  Aligned_cols=193  Identities=22%  Similarity=0.366  Sum_probs=165.9

Q ss_pred             HHHHHHHHHHHcCCCCCccccccccCccHHHHHHHHHHHHHHHHHHHHHHHHHHhh--hhhccccccCCCCcCcCCCCCC
Q psy14319        229 VKALDRLVTKKAGFTSSHIITGQTYSRKVDVIVTGVLSSLGASIHKLATDLRLLAH--MKEIEEPFESTQIGSSAMAYKR  306 (486)
Q Consensus       229 ~~~i~~~lA~~LGf~~a~~~~~~~~~rd~~~e~~~~l~~~~~~l~rla~Dl~l~ss--~~el~~~~~~~~~GSSiMPqKr  306 (486)
                      .+...+.+...+|+... +..+|+++||++++++++|+.++.+|+|||+||++|++  +||+.||++++++|||||||||
T Consensus       190 ~~~~~~~~~~~~~~~~~-~~~~~~~~rd~~~e~~~~l~~~~~~L~kia~Dl~~~~~~e~gev~e~~~~~~~GSS~MP~K~  268 (429)
T d1c3ca_         190 PPEVEEKALSYLGLKPE-PVSTQVVPRDRHAFYLSTLAIVAAGIERIAVEIRHLQRTEVLEVEEPFRKGQRGSSAMPHKK  268 (429)
T ss_dssp             CHHHHHHHHHHTTCEEC-SSCSSSCCTHHHHHHHHHHHHHHHHHHHHHHHHHHHTSTTTCSEECCCCC-----CCCTTCC
T ss_pred             chhHHHHHHHhhcCCcc-ccchHhhcchhHHHHHHHHHHHHHHHHHHHHHHHHHhhhcceEEeeccccCCCCcccccccc
Confidence            35555556666666543 56689999999999999999999999999999999998  9999999999999999999999


Q ss_pred             CchHHHHHHHHHHHHHHHhHHHHHHhhhhHhhhcccccCCCCCCccccchhhhhhccCCcchhhhhhccCCCCccccccC
Q psy14319        307 NPMRSERLCSLARFLMSLHQNSLATASTQWMERTLDDSANRFPTKSVFSCVTQVKQHGKENDLVDRIRADPYFAPILNQM  386 (486)
Q Consensus       307 NP~~~E~~~~~a~~~~g~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~g~~~d~~~~~~~~~~~~~~~~~~  386 (486)
                      ||+.+|+++++++.+.|...+++.. ...++|||+..|.                                         
T Consensus       269 NPv~~E~i~~~a~~~~g~~~~~~~~-~~~~~erd~~~~~-----------------------------------------  306 (429)
T d1c3ca_         269 NPITCERLTGLSRMMRAYVDPSLEN-IALWHERDISHSS-----------------------------------------  306 (429)
T ss_dssp             CCHHHHHHHHHHHHHHHTHHHHHHT-TCCSTTCCSHHHH-----------------------------------------
T ss_pred             CCchHHHHHHHHHHhcccHHHHHHh-cchhhcccchhhh-----------------------------------------
Confidence            9999999999999999999887654 4567777764321                                         


Q ss_pred             CCCCCCccccCCchhHhhhhhhcccchHHHHHHHHHHHHHHHhchhCCeeCHHHHHHHHhccCChhHHHHHHHHHHHcCC
Q psy14319        387 PTLLDPKSFYGRAPEQQRLSAKGIHTLSESFLTTDCLLITLQNVLEGLVVYPKVIQRHIDQELPFMATENIIMAMVKAGG  466 (486)
Q Consensus       387 ~~~~~p~~~~~~~~~q~~~~~~~~~~l~~~~~~~~~~l~~~~~~l~~l~v~~~~m~~~l~~~~~~~~a~~~~~~L~~~g~  466 (486)
                                           .+|..+++++.++..++..+..++++++||++||+++++.+.++++||.+++.|+++|+
T Consensus       307 ---------------------~~~~~~~~~~~~~~~~l~~~~~~i~~L~vn~erm~~nl~~s~g~i~Ae~~~~~Lv~~gl  365 (429)
T d1c3ca_         307 ---------------------VERYVFPDATQTLYYMIVTATNVVRNMKVNEERMKKNIDLTKGLVFSQRVLLKLIEKGL  365 (429)
T ss_dssp             ---------------------HHHHHHHHHHHHHHHHHHHHHHHHHHCEECHHHHHHHHTTTTTGGGHHHHHHHHHHTTC
T ss_pred             ---------------------ccccccchhHHHHHhHhhHHHHHhhccccchHHHHHHHHhhcCHHHHHHHHHHHHHcCC
Confidence                                 24678999999999999999999999999999999999999999999999999999999


Q ss_pred             ChHHHHHHHHHHHHHhhhc
Q psy14319        467 DRQVCHEKIRVLSHQAGAQ  485 (486)
Q Consensus       467 ~fr~Ah~~v~~~~~~a~~~  485 (486)
                      |||+||++|++++++|.++
T Consensus       366 ~~~~AheiV~~~a~~a~~~  384 (429)
T d1c3ca_         366 TRKEAYDIVQRNALKTWNS  384 (429)
T ss_dssp             CHHHHHHHHHHHHHHHHTS
T ss_pred             CHHHHHHHHHHHHHHHHHh
Confidence            9999999999999998654

>d1tj7a_ a.127.1.1 (A:) Argininosuccinate lyase/delta-crystallin {Escherichia coli [TaxId: 562]}

class: All alpha proteins
fold: L-aspartase-like
superfamily: L-aspartase-like
family: L-aspartase/fumarase
domain: Argininosuccinate lyase/delta-crystallin
species: Escherichia coli [TaxId: 562]

Probab=100.00  E-value=1.6e-33  Score=296.58  Aligned_cols=195  Identities=17%  Similarity=0.094  Sum_probs=167.2

Q ss_pred             CCCcHHHHHHHHHHHcCCCCCc-cccccccCccHHHHHHHHHHHHHHHHHHHHHHHHHHhh--hhhccccccCCCCcCcC
Q psy14319        225 DGDKVKALDRLVTKKAGFTSSH-IITGQTYSRKVDVIVTGVLSSLGASIHKLATDLRLLAH--MKEIEEPFESTQIGSSA  301 (486)
Q Consensus       225 ~g~~~~~i~~~lA~~LGf~~a~-~~~~~~~~rd~~~e~~~~l~~~~~~l~rla~Dl~l~ss--~~el~~~~~~~~~GSSi  301 (486)
                      .|+..+..++++++.|||..+. |..+++++||+.++++++++.++.+|+|||+||++|++  ++++.++ +++++||||
T Consensus       199 ~g~~~~~~~~~~a~~Lg~~~~~~n~~~~~~~rd~~~e~~~~l~~~~~~L~ria~Dl~l~~s~e~~~~~~~-~~~~~GSSi  277 (455)
T d1tj7a_         199 AGTAYEIDREQLAGWLGFASATRNSLDSVSDRDHVLELLSAAAIGMVHLSRFAEDLIFFNTGEAGFVELS-DRVTSGSSL  277 (455)
T ss_dssp             TCCSSCCCHHHHHHHHTCSSBCSCHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHTSTTTCCEECC-GGGCBCCTT
T ss_pred             ccCcCcchHHHHHHHhCCCcccCCccchhhchHHHHHHHHHHHHHHhHHHHHHHHHHHhhhhhhheeecc-ccccccccc
Confidence            3444566778899999998764 56689999999999999999999999999999999998  9999885 678999999


Q ss_pred             CCCCCCchHHHHHHHHHHHHHHHhHHHHHHhhhhHhhhcccccCCCCCCccccchhhhhhccCCcchhhhhhccCCCCcc
Q psy14319        302 MAYKRNPMRSERLCSLARFLMSLHQNSLATASTQWMERTLDDSANRFPTKSVFSCVTQVKQHGKENDLVDRIRADPYFAP  381 (486)
Q Consensus       302 MPqKrNP~~~E~~~~~a~~~~g~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~g~~~d~~~~~~~~~~~~~  381 (486)
                      |||||||+.+|+++++|+.+.|..++++......      .                    .++++|+            
T Consensus       278 MP~KrNP~~~E~i~~~a~~v~g~~~~~~~~~~~~------~--------------------~~~~rd~------------  319 (455)
T d1tj7a_         278 MPQKKNPDALELIRGKCGRVQGALTGMMMTLKGL------P--------------------LAYNKDM------------  319 (455)
T ss_dssp             CTTCCBCHHHHHHHHTHHHHHHHHHHHHHHHTTC------C--------------------SSCCGGG------------
T ss_pred             cccccCchHHHHHHhHHHHHHhHHHHHHHHHhcc------c--------------------HHHHhhH------------
Confidence            9999999999999999999999988887653211      0                    1233333            


Q ss_pred             ccccCCCCCCCccccCCchhHhhhhhhcccchHHHHHHHHHHHHHHHhchhCCeeCHHHHHHHHhccCChhHHHHHHHHH
Q psy14319        382 ILNQMPTLLDPKSFYGRAPEQQRLSAKGIHTLSESFLTTDCLLITLQNVLEGLVVYPKVIQRHIDQELPFMATENIIMAM  461 (486)
Q Consensus       382 ~~~~~~~~~~p~~~~~~~~~q~~~~~~~~~~l~~~~~~~~~~l~~~~~~l~~l~v~~~~m~~~l~~~~~~~~a~~~~~~L  461 (486)
                                          |     +.|..+++++..+..++..+..++++++||++||+++++  .+++++|++++.|
T Consensus       320 --------------------~-----~~~~~l~~~~~~~~~~l~~~~~~i~~l~vn~erm~~~~~--~~~~~at~la~~L  372 (455)
T d1tj7a_         320 --------------------Q-----EDKEGLFDALDTWLDCLHMAALVLDGIQVKRPRCQEAAQ--QGYANATELADYL  372 (455)
T ss_dssp             --------------------G-----GHHHHHHHHHHHHHHHHHHHHHHHTTCEECHHHHHHHHT--STTTTHHHHHHHH
T ss_pred             --------------------H-----HHHHHHHHHHHHHHHHHHHHHHhhhhhhhcchhHHHHhh--cchhHHHHHHHHH
Confidence                                1     134678999999999999999999999999999999986  4688999999999


Q ss_pred             HHcCCChHHHHHHHHHHHHHhhhc
Q psy14319        462 VKAGGDRQVCHEKIRVLSHQAGAQ  485 (486)
Q Consensus       462 ~~~g~~fr~Ah~~v~~~~~~a~~~  485 (486)
                      |++|+|||+||++|++++++|.++
T Consensus       373 v~kgi~freAh~~V~~~v~~A~~~  396 (455)
T d1tj7a_         373 VAKGVPFREAHHIVGEAVVEAIRQ  396 (455)
T ss_dssp             HHTTCCHHHHHHHHHHHHHHHHHH
T ss_pred             HHcCCCHHHHHHHHHHHHHHHHHh
Confidence            999999999999999999999764

>d1dofa_ a.127.1.1 (A:) Adenylosuccinate lyase {Archaeon Pyrobaculum aerophilum [TaxId: 13773]}

class: All alpha proteins
fold: L-aspartase-like
superfamily: L-aspartase-like
family: L-aspartase/fumarase
domain: Adenylosuccinate lyase
species: Archaeon Pyrobaculum aerophilum [TaxId: 13773]

Probab=100.00  E-value=1.3e-33  Score=292.81  Aligned_cols=194  Identities=28%  Similarity=0.389  Sum_probs=161.8

Q ss_pred             CCCCcHHHHHHHHHHHcCCCCCccccccccCccHHHHHHHHHHHHHHHHHHHHHHHHHHhh--hhhccccccCCCCcCcC
Q psy14319        224 GDGDKVKALDRLVTKKAGFTSSHIITGQTYSRKVDVIVTGVLSSLGASIHKLATDLRLLAH--MKEIEEPFESTQIGSSA  301 (486)
Q Consensus       224 ~~g~~~~~i~~~lA~~LGf~~a~~~~~~~~~rd~~~e~~~~l~~~~~~l~rla~Dl~l~ss--~~el~~~~~~~~~GSSi  301 (486)
                      +.++.+..+.+.+++.+|+... +..+++++||++++++++|+.++++|+|||+||++|++  +||+.+    +++||||
T Consensus       189 ~~~~~~~~~~~~l~~~lgl~~~-~~~~~~~~rd~~~e~~~~L~~~a~~L~kia~Di~~~s~~e~ge~~e----~~~GSS~  263 (402)
T d1dofa_         189 SWGELGLEVRRRVAERLGLPHH-VITTQVAPRESFAVLASALALMAAVFERLAVEIRELSRPEIGEVVE----GGGGSSA  263 (402)
T ss_dssp             GGGGGHHHHHHHHHHHTTCCBC-SSCSSSCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSTTTCSEES----CC-----
T ss_pred             cccchhhHHHHHHHHHhccccc-chhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHhCCccccccc----ccCcccc
Confidence            4566778888899999999763 56789999999999999999999999999999999998  888864    4799999


Q ss_pred             CCCCCCchHHHHHHHHHHHHHHHhHHHHHHhhhhHhhhcccccCCCCCCccccchhhhhhccCCcchhhhhhccCCCCcc
Q psy14319        302 MAYKRNPMRSERLCSLARFLMSLHQNSLATASTQWMERTLDDSANRFPTKSVFSCVTQVKQHGKENDLVDRIRADPYFAP  381 (486)
Q Consensus       302 MPqKrNP~~~E~~~~~a~~~~g~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~g~~~d~~~~~~~~~~~~~  381 (486)
                      ||||+||+.+|.++++|+.+.|..+.+ ..+..+++|||+.+|.                                    
T Consensus       264 MP~K~NP~~~E~i~~~a~~~~g~~~~~-~~~~~~~~erd~~~~~------------------------------------  306 (402)
T d1dofa_         264 MPHKANPTASERIVSLARYVRALTHVA-FENVALWHERDLTNSA------------------------------------  306 (402)
T ss_dssp             ----CCCHHHHHHHHHHHHHHHHHHHH-HHTTCCCTTCCGGGHH------------------------------------
T ss_pred             ccCCCCchHHHHHhchHHHHHHHHHHH-HHhhcccccccchhhh------------------------------------
Confidence            999999999999999999999986544 4456677888765431                                    


Q ss_pred             ccccCCCCCCCccccCCchhHhhhhhhcccchHHHHHHHHHHHHHHHhchhCCeeCHHHHHHHHhccCChhHHHHHHHHH
Q psy14319        382 ILNQMPTLLDPKSFYGRAPEQQRLSAKGIHTLSESFLTTDCLLITLQNVLEGLVVYPKVIQRHIDQELPFMATENIIMAM  461 (486)
Q Consensus       382 ~~~~~~~~~~p~~~~~~~~~q~~~~~~~~~~l~~~~~~~~~~l~~~~~~l~~l~v~~~~m~~~l~~~~~~~~a~~~~~~L  461 (486)
                                                .+|..+++++.++..++..+..++++|+||++||+++++.+.++++||.+++.|
T Consensus       307 --------------------------~~~~~l~~~~~~~~~~l~~~~~~l~~l~vn~erm~~~l~~s~~~i~ae~~~~~L  360 (402)
T d1dofa_         307 --------------------------NERVWIPEALLALDEILTSALRVLKNVYIDEERITENLQKALPYILTEFHMNRM  360 (402)
T ss_dssp             --------------------------HHHHHHHHHHHHHHHHHHHHHHHHHHCEECHHHHHHHHHHHHHHHCHHHHHHHH
T ss_pred             --------------------------hhhhccchhHHHHHHHHHHHHHHHccCEECHHHHHHHHHhhcChhHHHHHHHHH
Confidence                                      145689999999999999999999999999999999999999999999999999


Q ss_pred             HHcCCChHHHHHHHHHHHHHhhhc
Q psy14319        462 VKAGGDRQVCHEKIRVLSHQAGAQ  485 (486)
Q Consensus       462 ~~~g~~fr~Ah~~v~~~~~~a~~~  485 (486)
                      +++|+|||+||++|++++..+.++
T Consensus       361 ~~~gl~~~~Ah~~v~~~~~~a~e~  384 (402)
T d1dofa_         361 IKEGASRAEAYKKAKEVKALTFEY  384 (402)
T ss_dssp             HHTTCCHHHHHHHHTTCCCCCCGG
T ss_pred             HHcCCCHHHHHHHHHHHHHHHHHh
Confidence            999999999999999988777654

>d1re5a_ a.127.1.1 (A:) 3-carboxy-cis,cis-muconate cycloisomerase (CMLE) {Pseudomonas putida, strain KT2440 [TaxId: 303]}

class: All alpha proteins
fold: L-aspartase-like
superfamily: L-aspartase-like
family: L-aspartase/fumarase
domain: 3-carboxy-cis,cis-muconate cycloisomerase (CMLE)
species: Pseudomonas putida, strain KT2440 [TaxId: 303]

Probab=100.00  E-value=7.6e-33  Score=290.82  Aligned_cols=196  Identities=23%  Similarity=0.227  Sum_probs=164.7

Q ss_pred             CCCCcHHHHHHHHHHHcCCCCCccccccccCccHHHHHHHHHHHHHHHHHHHHHHHHHHhh--hhhccccccCCCCcCcC
Q psy14319        224 GDGDKVKALDRLVTKKAGFTSSHIITGQTYSRKVDVIVTGVLSSLGASIHKLATDLRLLAH--MKEIEEPFESTQIGSSA  301 (486)
Q Consensus       224 ~~g~~~~~i~~~lA~~LGf~~a~~~~~~~~~rd~~~e~~~~l~~~~~~l~rla~Dl~l~ss--~~el~~~~~~~~~GSSi  301 (486)
                      +.+..+..+.+.+++.|||..+  ...++++||++++++++++.++.+++|||+|+++|++  +|++.+++..+++||||
T Consensus       199 ~~~~~~~~~~~~l~~~lgl~~~--~~~~~~~rd~~~e~~~~l~~~~~~l~kia~di~~l~~~~~~~~~e~~~~~~~GSSi  276 (448)
T d1re5a_         199 ALGSKAMPVAEALAEQLKLTLP--EQPWHTQRDRLVEFASVLGLVAGSLGKFGRDISLLMQTEAGEVFEPSAPGKGGSST  276 (448)
T ss_dssp             GGGGGHHHHHHHHHHHHTCBCC--SSCCTTCCHHHHHHHHHHHHHHHHHHHHHHHHHHHTSTTTCCEECCCCC-------
T ss_pred             cccchhHHHHHHHHHHhCCCCC--CCcchHhhhHHHHHHHHHHHHHhhHHHHHHHHHHhhhhhhhhhhccccccCCccch
Confidence            3456778889999999999753  4567889999999999999999999999999999998  99999998888999999


Q ss_pred             CCCCCCchHHHHHHHHHHHHHHHhHHHHHHhhhhHhhhcccccCCCCCCccccchhhhhhccCCcchhhhhhccCCCCcc
Q psy14319        302 MAYKRNPMRSERLCSLARFLMSLHQNSLATASTQWMERTLDDSANRFPTKSVFSCVTQVKQHGKENDLVDRIRADPYFAP  381 (486)
Q Consensus       302 MPqKrNP~~~E~~~~~a~~~~g~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~g~~~d~~~~~~~~~~~~~  381 (486)
                      |||||||+.+|+++++|+++.|+..+++.. ..+++|||+.+|.                                    
T Consensus       277 MP~K~NP~~~E~i~~~a~~v~g~~~~~~~~-~~~~~erd~~~~~------------------------------------  319 (448)
T d1re5a_         277 MPHKRNPVGAAVLIGAATRVPGLLSTLFAA-MPQEHERSLGLWH------------------------------------  319 (448)
T ss_dssp             ---CCCCHHHHHHHHHHHHHHHHHHHHHHT-CCCCTTBCSSTTT------------------------------------
T ss_pred             hhhccCcchHHHHHHHHHHHHHHHHHHhhh-cchhhHhhhhhhh------------------------------------
Confidence            999999999999999999999999887654 4577777765432                                    


Q ss_pred             ccccCCCCCCCccccCCchhHhhhhhhcccchHHHHHHHHHHHHHHHhchhCCeeCHHHHHHHHhccCChhHHHHHHHHH
Q psy14319        382 ILNQMPTLLDPKSFYGRAPEQQRLSAKGIHTLSESFLTTDCLLITLQNVLEGLVVYPKVIQRHIDQELPFMATENIIMAM  461 (486)
Q Consensus       382 ~~~~~~~~~~p~~~~~~~~~q~~~~~~~~~~l~~~~~~~~~~l~~~~~~l~~l~v~~~~m~~~l~~~~~~~~a~~~~~~L  461 (486)
                                                .+|..+++++.++..++..+..++++++||+++|+++++.+.+++++|.+++.|
T Consensus       320 --------------------------~~~~~~~~~~~~~~~~~~~~~~~l~~l~vn~~~m~~~l~~s~~~~~ae~~~~~L  373 (448)
T d1re5a_         320 --------------------------AEWETLPDICCLVSGALRQAQVIAEGMEVDAARMRRNLDLTQGLVLAEAVSIVL  373 (448)
T ss_dssp             --------------------------THHHHHHHHHHHHHHHHHHHHHHHHHCEECHHHHHHHHTTSTTGGGHHHHHHHH
T ss_pred             --------------------------hhhhhhhhhhHHHHHHHHhhhcccccCcccHHHHHHHHHhccCHHHHHHHHHHH
Confidence                                      145689999999999999999999999999999999999999999999999999


Q ss_pred             HHcCCChHHHHHHHHHHHHHhhhc
Q psy14319        462 VKAGGDRQVCHEKIRVLSHQAGAQ  485 (486)
Q Consensus       462 ~~~g~~fr~Ah~~v~~~~~~a~~~  485 (486)
                      ++. +|||+||++|+++++.|.++
T Consensus       374 ~~~-ig~~~Ah~iv~~~~~~a~~~  396 (448)
T d1re5a_         374 AQR-LGRDRAHHLLEQCCQRAVAE  396 (448)
T ss_dssp             HHH-SCHHHHHHHHHHHHHHHHHT
T ss_pred             hhc-CCHHHHHHHHHHHHHHHHHh
Confidence            875 99999999999999998654

>d1k62b_ a.127.1.1 (B:) Argininosuccinate lyase/delta-crystallin {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: L-aspartase-like
superfamily: L-aspartase-like
family: L-aspartase/fumarase
domain: Argininosuccinate lyase/delta-crystallin
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=3.4e-33  Score=294.37  Aligned_cols=193  Identities=19%  Similarity=0.145  Sum_probs=164.0

Q ss_pred             CCcHHHHHHHHHHHcCCCCCc-cccccccCccHHHHHHHHHHHHHHHHHHHHHHHHHHhh--hhhccccccCCCCcCcCC
Q psy14319        226 GDKVKALDRLVTKKAGFTSSH-IITGQTYSRKVDVIVTGVLSSLGASIHKLATDLRLLAH--MKEIEEPFESTQIGSSAM  302 (486)
Q Consensus       226 g~~~~~i~~~lA~~LGf~~a~-~~~~~~~~rd~~~e~~~~l~~~~~~l~rla~Dl~l~ss--~~el~~~~~~~~~GSSiM  302 (486)
                      |+..+..++.+++.+||..+. |..+++++||+++|++++++.++.+|+|||+||++|++  ++++.+| ++.++|||||
T Consensus       201 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~~sRd~~~e~~~~l~~l~~~l~ria~Dl~l~~~~e~~~~~~~-~~~~~GSSiM  279 (459)
T d1k62b_         201 GNPLGVDRELLRAELNFGAITLNSMDATSERDFVAEFLFWRSLCMTHLSRMAEDLILYCTKEFSFVQLS-DAYSTGSSLM  279 (459)
T ss_dssp             CCTTCCCHHHHHHHTTCSCBCSCHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHTSTTTCSEECC-GGGCEECSSC
T ss_pred             CCCcccchhhhhhHHhhccccccchhhhhcchHHHHHHHHHhHHHHHHHHHHHHHHHhccccccceeec-cccccccccc
Confidence            334455678899999998654 66789999999999999999999999999999999998  8988875 5678999999


Q ss_pred             CCCCCchHHHHHHHHHHHHHHHhHHHHHHhhhhHhhhcccccCCCCCCccccchhhhhhccCCcchhhhhhccCCCCccc
Q psy14319        303 AYKRNPMRSERLCSLARFLMSLHQNSLATASTQWMERTLDDSANRFPTKSVFSCVTQVKQHGKENDLVDRIRADPYFAPI  382 (486)
Q Consensus       303 PqKrNP~~~E~~~~~a~~~~g~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~g~~~d~~~~~~~~~~~~~~  382 (486)
                      ||||||+.+|+++++++.+.|..++++.....      +.                    .++++|+             
T Consensus       280 PqKrNP~~~E~i~~~a~~~~g~~~~~~~~~~~------~~--------------------~~~~rd~-------------  320 (459)
T d1k62b_         280 PRKKNPDSLELIRSKAGRVFGRCAGLLMTLKG------LP--------------------STYNKDL-------------  320 (459)
T ss_dssp             TTCEECHHHHHHHHHHHHHHHHHHHHHHHHTT------CC--------------------SSCCGGG-------------
T ss_pred             ccccccHHHHHHHHHhhhhhhhhhhHHHHHhc------Ch--------------------hhhcccc-------------
Confidence            99999999999999999999999887755311      11                    1233333             


Q ss_pred             cccCCCCCCCccccCCchhHhhhhhhcccchHHHHHHHHHHHHHHHhchhCCeeCHHHHHHHHhccCChhHHHHHHHHHH
Q psy14319        383 LNQMPTLLDPKSFYGRAPEQQRLSAKGIHTLSESFLTTDCLLITLQNVLEGLVVYPKVIQRHIDQELPFMATENIIMAMV  462 (486)
Q Consensus       383 ~~~~~~~~~p~~~~~~~~~q~~~~~~~~~~l~~~~~~~~~~l~~~~~~l~~l~v~~~~m~~~l~~~~~~~~a~~~~~~L~  462 (486)
                                              +..|..+++++..+..++..+..++++++||++||+++++.   ++++|++++.||
T Consensus       321 ------------------------~~~~~~l~~~~~~~~~~l~~~~~vi~~l~vn~erm~~~l~~---~~~At~la~~Lv  373 (459)
T d1k62b_         321 ------------------------QEDKEAVFEVSDTMSAVLQVATGVISTLQIHQENMGQALSP---DMLATDLAYYLV  373 (459)
T ss_dssp             ------------------------GGHHHHHHHHHHHHHHHHHHHHHHHHHCEECHHHHHHTCCG---GGTHHHHHHHHH
T ss_pred             ------------------------hhcchhhhhhhHHHHhhhhhhhhccceeEechhhHHHHHhh---cchHHHHHHHHH
Confidence                                    11356889999999999999999999999999999999853   368999999999


Q ss_pred             HcCCChHHHHHHHHHHHHHhhhc
Q psy14319        463 KAGGDRQVCHEKIRVLSHQAGAQ  485 (486)
Q Consensus       463 ~~g~~fr~Ah~~v~~~~~~a~~~  485 (486)
                      ++|+|||+||++|+++|++|.++
T Consensus       374 ~~Gi~fr~AH~~V~~lv~~a~~~  396 (459)
T d1k62b_         374 RKGMPFRQAHEASGKAVFMAETK  396 (459)
T ss_dssp             TTTCCHHHHHHHHHHHHHHHHHT
T ss_pred             HcCCCHHHHHHHHHHHHHHHHHh
Confidence            99999999999999999999765

>d1q5na_ a.127.1.1 (A:) 3-carboxy-cis,cis-muconate cycloisomerase (CMLE) {Acinetobacter calcoaceticus [TaxId: 471]}

class: All alpha proteins
fold: L-aspartase-like
superfamily: L-aspartase-like
family: L-aspartase/fumarase
domain: 3-carboxy-cis,cis-muconate cycloisomerase (CMLE)
species: Acinetobacter calcoaceticus [TaxId: 471]

Probab=99.98  E-value=3.5e-32  Score=285.36  Aligned_cols=205  Identities=22%  Similarity=0.217  Sum_probs=164.9

Q ss_pred             CCCCCCcccccccccCCCCCCCcHHHHHHHHHHHcCCCCCccccccccCccHHHHHHHHHHHHHHHHHHHHHHHHHHhh-
Q psy14319        206 IPDNRLSSHHTTKRSGRPGDGDKVKALDRLVTKKAGFTSSHIITGQTYSRKVDVIVTGVLSSLGASIHKLATDLRLLAH-  284 (486)
Q Consensus       206 ~~~~~g~~~~~~~~~~~~~~g~~~~~i~~~lA~~LGf~~a~~~~~~~~~rd~~~e~~~~l~~~~~~l~rla~Dl~l~ss-  284 (486)
                      ++|+.|+..         ..+.....+.+.+++.||+..  +...|+++||+++|++++++.++++|+|||+||++|++ 
T Consensus       191 lgga~g~~~---------~~~~~~~~~~~~l~~~l~l~~--~~~~~~~~rd~~~e~~~~l~~~~~~L~kia~Dl~l~~~~  259 (444)
T d1q5na_         191 LGGAVGSLA---------SLQDQGSIVVEAYAKQLKLGQ--TACTWHGERDRIVEIASVLGIITGNVGKMARDWSLMMQT  259 (444)
T ss_dssp             CCCTTSSCG---------GGTTCHHHHHHHHHHHHTCBC--CSSCCSSCCHHHHHHHHHHHHHHHHHHHHHHHHHHHTST
T ss_pred             ccccccccc---------cccchhHHHHHHhhhcccccc--cccchhhhhHHHHHHHHHHhhhhhHHHHHHHHHHHhccc
Confidence            566666642         234567888888999999965  35677889999999999999999999999999999998 


Q ss_pred             -hhhccccccCCCCcCcCCCCCCCchHHHHHHHHHHHHHHHhHHHHHHhhhhHhhhcccccCCCCCCccccchhhhhhcc
Q psy14319        285 -MKEIEEPFESTQIGSSAMAYKRNPMRSERLCSLARFLMSLHQNSLATASTQWMERTLDDSANRFPTKSVFSCVTQVKQH  363 (486)
Q Consensus       285 -~~el~~~~~~~~~GSSiMPqKrNP~~~E~~~~~a~~~~g~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~  363 (486)
                       ++++.||+..+++|||||||||||+.+|.++++|+++.|....+... ..++++|+..+|                   
T Consensus       260 e~~~~~e~~~~~~~GSSiMP~K~NP~~~E~i~~~a~~~~g~~~~~~~~-~~~~~~~~~~~~-------------------  319 (444)
T d1q5na_         260 EIAEVFEPTAKGRGGSSTMPHKRNPVAAASVLAAANRVPALMSSIYQS-MVQEHERSLGAW-------------------  319 (444)
T ss_dssp             TTCCEECCC-------------CCCHHHHHHHHHHHHHHHHHHHHHHT-TCCCTTSCSSHH-------------------
T ss_pred             cccccccccccccccchhhhhccCchhHHHHHHHHHhHHHHHHHHHHH-hhcchhhcchhh-------------------
Confidence             99999998888999999999999999999999999999998877654 445666665432                   


Q ss_pred             CCcchhhhhhccCCCCccccccCCCCCCCccccCCchhHhhhhhhcccchHHHHHHHHHHHHHHHhchhCCeeCHHHHHH
Q psy14319        364 GKENDLVDRIRADPYFAPILNQMPTLLDPKSFYGRAPEQQRLSAKGIHTLSESFLTTDCLLITLQNVLEGLVVYPKVIQR  443 (486)
Q Consensus       364 g~~~d~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~q~~~~~~~~~~l~~~~~~~~~~l~~~~~~l~~l~v~~~~m~~  443 (486)
                                                                 ..+|..+++++.++..++..+..++++|+||+++|++
T Consensus       320 -------------------------------------------~~~~~~l~~~~~~~~~~l~~~~~~l~~l~vn~erm~~  356 (444)
T d1q5na_         320 -------------------------------------------HAEWLSLPEIFQLTAGALERTLDVLKGMEVNAENMHQ  356 (444)
T ss_dssp             -------------------------------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHCEECHHHHHH
T ss_pred             -------------------------------------------hHHhhhhcccchhhhhHHHHHHhHHHHhcchhhHHHH
Confidence                                                       1145688999999999999999999999999999999


Q ss_pred             HHhccCChhHHHHHHHHHHHcCCChHHHHHHHHHHHHHhhhc
Q psy14319        444 HIDQELPFMATENIIMAMVKAGGDRQVCHEKIRVLSHQAGAQ  485 (486)
Q Consensus       444 ~l~~~~~~~~a~~~~~~L~~~g~~fr~Ah~~v~~~~~~a~~~  485 (486)
                      +++.+.+++++|.++..|++. +|||+||++|+++++.|.++
T Consensus       357 nle~s~~~i~se~~~~~L~~~-ig~~~Ah~iV~~~~~~a~~~  397 (444)
T d1q5na_         357 NIECTHGLIMAEAVMMALAPH-MGRLNAHHVVEAACKTAVAE  397 (444)
T ss_dssp             HHHTTTTGGGHHHHHHHHHHH-HCHHHHHHHHHHHHHHHHHH
T ss_pred             HHHhccChHHHHHHHHHhccC-CCHHHHHHHHHHHHHHHHHh
Confidence            999999999999999999986 89999999999999988653

>d1tj7a_ a.127.1.1 (A:) Argininosuccinate lyase/delta-crystallin {Escherichia coli [TaxId: 562]}

class: All alpha proteins
fold: L-aspartase-like
superfamily: L-aspartase-like
family: L-aspartase/fumarase
domain: Argininosuccinate lyase/delta-crystallin
species: Escherichia coli [TaxId: 562]

Probab=99.97  E-value=1.6e-32  Score=288.88  Aligned_cols=209  Identities=15%  Similarity=0.139  Sum_probs=177.8

Q ss_pred             hhhhhHhccHHHHHHHHHHHhhhcCCCceeecccCcccccchhhhhhhhhhhhHHHHHHcCCCCCC-CcccccccccHHH
Q psy14319          2 KFYKYVLGDGDKVKALDRLVTKKAGFNSSHIITGQTYSRKVDVIVTGVLSSLGASIHKKAGFNSSH-IITGQTYSRKVDV   80 (486)
Q Consensus         2 ~~~~~~~~d~~r~~~~~~~~~~~~g~~~~~a~~g~~~~r~~d~~~~Gt~a~~~~~~a~~LGf~~~~-~~~~av~~RD~~~   80 (486)
                      +|++.|.||.+|+.++.++++.+ ++ |+++.+|+.++  +|          +++++++|||..+. ++.+++++||+++
T Consensus       169 ~~~~~l~r~~~rl~~~~~~~~~~-~l-G~~a~~g~~~~--~~----------~~~~a~~Lg~~~~~~n~~~~~~~rd~~~  234 (455)
T d1tj7a_         169 AYVEMLARDESRLQDALKRLDVS-PL-GCGALAGTAYE--ID----------REQLAGWLGFASATRNSLDSVSDRDHVL  234 (455)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHCCB-CT-TCTTTTCCSSC--CC----------HHHHHHHHTCSSBCSCHHHHHHCCHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHH-Hh-cccccccCcCc--ch----------HHHHHHHhCCCcccCCccchhhchHHHH
Confidence            68999999999999999999853 43 35788888886  77          46899999999886 4568999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHh--ccccccccccCCCCCccCCCCCCchHHHHHHHHHHHHHHHHHHHHH--hhccc
Q psy14319         81 IVTGVLSSLGASIHKLATDLRLLAH--MKEIEEPFESTQIGSSAMAYKRNPMRSERLCSLARFLMSLHQNSLA--TASTQ  156 (486)
Q Consensus        81 e~~~~la~la~~LsRlA~DL~l~ss--~~el~e~~~~~~~GSSiMPqKrNP~~~E~ir~~a~~v~g~~~~~l~--~~~~~  156 (486)
                      ++++++++++++|+|||+||++|++  |+++.++. ++++|||||||||||+.+|.++++|+++.|..++++.  .+++.
T Consensus       235 e~~~~l~~~~~~L~ria~Dl~l~~s~e~~~~~~~~-~~~~GSSiMP~KrNP~~~E~i~~~a~~v~g~~~~~~~~~~~~~~  313 (455)
T d1tj7a_         235 ELLSAAAIGMVHLSRFAEDLIFFNTGEAGFVELSD-RVTSGSSLMPQKKNPDALELIRGKCGRVQGALTGMMMTLKGLPL  313 (455)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHTSTTTCCEECCG-GGCBCCTTCTTCCBCHHHHHHHHTHHHHHHHHHHHHHHHTTCCS
T ss_pred             HHHHHHHHHHhHHHHHHHHHHHhhhhhhheeeccc-cccccccccccccCchHHHHHHhHHHHHHhHHHHHHHHHhcccH
Confidence            9999999999999999999999996  88887764 6799999999999999999999999999999876553  46788


Q ss_pred             cccCCCchhhHhhhchHHHHHHHHHHHHHHHHhhhccccCHHhhhhhhcCCCCCCcccccccccCCCCCCCcHHHHHHHH
Q psy14319        157 WMERTLDDSANRRLTLSESFLTTDCLLITLQNVLEGLVVYPKETYSIRIIPDNRLSSHHTTKRSGRPGDGDKVKALDRLV  236 (486)
Q Consensus       157 ~~erDl~~~~~~~~~l~~a~~~~~~~l~~~~~vl~~l~vn~erm~~~~~~~~~~g~~~~~~~~~~~~~~g~~~~~i~~~l  236 (486)
                      +||||++++   +..+++++..+..++..+..++++++||++||++..    ..|+              ..++.+...+
T Consensus       314 ~~~rd~~~~---~~~l~~~~~~~~~~l~~~~~~i~~l~vn~erm~~~~----~~~~--------------~~at~la~~L  372 (455)
T d1tj7a_         314 AYNKDMQED---KEGLFDALDTWLDCLHMAALVLDGIQVKRPRCQEAA----QQGY--------------ANATELADYL  372 (455)
T ss_dssp             SCCGGGGGH---HHHHHHHHHHHHHHHHHHHHHHTTCEECHHHHHHHH----TSTT--------------TTHHHHHHHH
T ss_pred             HHHhhHHHH---HHHHHHHHHHHHHHHHHHHHhhhhhhhcchhHHHHh----hcch--------------hHHHHHHHHH
Confidence            999999876   578899999999999999999999999999998843    1222              2357777774


Q ss_pred             -HHHcCCCCCc
Q psy14319        237 -TKKAGFTSSH  246 (486)
Q Consensus       237 -A~~LGf~~a~  246 (486)
                       .+.+||+.+|
T Consensus       373 v~kgi~freAh  383 (455)
T d1tj7a_         373 VAKGVPFREAH  383 (455)
T ss_dssp             HHTTCCHHHHH
T ss_pred             HHcCCCHHHHH
Confidence             6667777654

>d1k62b_ a.127.1.1 (B:) Argininosuccinate lyase/delta-crystallin {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: L-aspartase-like
superfamily: L-aspartase-like
family: L-aspartase/fumarase
domain: Argininosuccinate lyase/delta-crystallin
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.97  E-value=7.7e-32  Score=283.95  Aligned_cols=208  Identities=17%  Similarity=0.131  Sum_probs=175.5

Q ss_pred             hhhhhHhccHHHHHHHHHHHhhhcCCCceeecccCcccccchhhhhhhhhhhhHHHHHHcCCCCCC-CcccccccccHHH
Q psy14319          2 KFYKYVLGDGDKVKALDRLVTKKAGFNSSHIITGQTYSRKVDVIVTGVLSSLGASIHKKAGFNSSH-IITGQTYSRKVDV   80 (486)
Q Consensus         2 ~~~~~~~~d~~r~~~~~~~~~~~~g~~~~~a~~g~~~~r~~d~~~~Gt~a~~~~~~a~~LGf~~~~-~~~~av~~RD~~~   80 (486)
                      +|++.|.||.+|+.++.++++.+ ++ |+++.+|+.++  +|+          ++++++|||..+. ++.+++++||+++
T Consensus       170 ~~~~~l~r~~~rl~~~~~~~~~~-~l-Gg~a~~~~~~~--~~~----------~~~~~~l~~~~~~~~~~~~~~sRd~~~  235 (459)
T d1k62b_         170 SHAVALTRDSERLLEVRKRINVL-PL-GSGAIAGNPLG--VDR----------ELLRAELNFGAITLNSMDATSERDFVA  235 (459)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHSCB-CT-TCTTTTCCTTC--CCH----------HHHHHHTTCSCBCSCHHHHHHCCHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHhhhh-hc-ccccCCCCCcc--cch----------hhhhhHHhhccccccchhhhhcchHHH
Confidence            68999999999999999999853 44 36888888886  774          6899999999886 5668999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHh--ccccccccccCCCCCccCCCCCCchHHHHHHHHHHHHHHHHHHHH--Hhhccc
Q psy14319         81 IVTGVLSSLGASIHKLATDLRLLAH--MKEIEEPFESTQIGSSAMAYKRNPMRSERLCSLARFLMSLHQNSL--ATASTQ  156 (486)
Q Consensus        81 e~~~~la~la~~LsRlA~DL~l~ss--~~el~e~~~~~~~GSSiMPqKrNP~~~E~ir~~a~~v~g~~~~~l--~~~~~~  156 (486)
                      |+++++++++++|+|||+||++|++  |+++.++. +.++|||||||||||+.+|+++++++.+.|..++++  +.+.+.
T Consensus       236 e~~~~l~~l~~~l~ria~Dl~l~~~~e~~~~~~~~-~~~~GSSiMPqKrNP~~~E~i~~~a~~~~g~~~~~~~~~~~~~~  314 (459)
T d1k62b_         236 EFLFWRSLCMTHLSRMAEDLILYCTKEFSFVQLSD-AYSTGSSLMPRKKNPDSLELIRSKAGRVFGRCAGLLMTLKGLPS  314 (459)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHTSTTTCSEECCG-GGCEECSSCTTCEECHHHHHHHHHHHHHHHHHHHHHHHHTTCCS
T ss_pred             HHHHHHhHHHHHHHHHHHHHHHhccccccceeecc-cccccccccccccccHHHHHHHHHhhhhhhhhhhHHHHHhcChh
Confidence            9999999999999999999999995  88888765 568899999999999999999999999999987644  346789


Q ss_pred             cccCCCchhhHhhhchHHHHHHHHHHHHHHHHhhhccccCHHhhhhhhcCCCCCCcccccccccCCCCCCCcHHHHHHHH
Q psy14319        157 WMERTLDDSANRRLTLSESFLTTDCLLITLQNVLEGLVVYPKETYSIRIIPDNRLSSHHTTKRSGRPGDGDKVKALDRLV  236 (486)
Q Consensus       157 ~~erDl~~~~~~~~~l~~a~~~~~~~l~~~~~vl~~l~vn~erm~~~~~~~~~~g~~~~~~~~~~~~~~g~~~~~i~~~l  236 (486)
                      +|+||++..   +..+++++..+..++..+..++++++||++||++..                  .++ ..++++...+
T Consensus       315 ~~~rd~~~~---~~~l~~~~~~~~~~l~~~~~vi~~l~vn~erm~~~l------------------~~~-~~At~la~~L  372 (459)
T d1k62b_         315 TYNKDLQED---KEAVFEVSDTMSAVLQVATGVISTLQIHQENMGQAL------------------SPD-MLATDLAYYL  372 (459)
T ss_dssp             SCCGGGGGH---HHHHHHHHHHHHHHHHHHHHHHHHCEECHHHHHHTC------------------CGG-GTHHHHHHHH
T ss_pred             hhcccchhc---chhhhhhhHHHHhhhhhhhhccceeEechhhHHHHH------------------hhc-chHHHHHHHH
Confidence            999998765   577899999999999999999999999999999821                  111 1356777776


Q ss_pred             H-HHcCCCCCc
Q psy14319        237 T-KKAGFTSSH  246 (486)
Q Consensus       237 A-~~LGf~~a~  246 (486)
                      . +.+||+.+|
T Consensus       373 v~~Gi~fr~AH  383 (459)
T d1k62b_         373 VRKGMPFRQAH  383 (459)
T ss_dssp             HTTTCCHHHHH
T ss_pred             HHcCCCHHHHH
Confidence            5 446666653

>d1tjva_ a.127.1.1 (A:) Argininosuccinate lyase/delta-crystallin {Domestic duck (Anas platyrhynchos), delta-crystallin [TaxId: 8839]}

class: All alpha proteins
fold: L-aspartase-like
superfamily: L-aspartase-like
family: L-aspartase/fumarase
domain: Argininosuccinate lyase/delta-crystallin
species: Domestic duck (Anas platyrhynchos), delta-crystallin [TaxId: 8839]

Probab=99.97  E-value=5.5e-31  Score=276.66  Aligned_cols=194  Identities=19%  Similarity=0.189  Sum_probs=163.0

Q ss_pred             CCCcHHHHHHHHHHHcCCCCCc-cccccccCccHHHHHHHHHHHHHHHHHHHHHHHHHHhh--hhhccccccCCCCcCcC
Q psy14319        225 DGDKVKALDRLVTKKAGFTSSH-IITGQTYSRKVDVIVTGVLSSLGASIHKLATDLRLLAH--MKEIEEPFESTQIGSSA  301 (486)
Q Consensus       225 ~g~~~~~i~~~lA~~LGf~~a~-~~~~~~~~rd~~~e~~~~l~~~~~~l~rla~Dl~l~ss--~~el~~~~~~~~~GSSi  301 (486)
                      .|+..+..++.+++.+||..+. +..+|+++||++++++++++.++.+|+|||+||++|++  +++++ .+++.++||||
T Consensus       189 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~rd~~~e~~~~l~~la~~L~kia~Dl~l~~~~e~~~~e-~~~~~~~GSSi  267 (449)
T d1tjva_         189 AGNPLDIDREMLRSELEFASISLNSMDAISERDFVVEFLSFATLLMIHLSKMAEDLIIYSTSEFGFLT-LSDAFSTGSSL  267 (449)
T ss_dssp             TCCTTCCCHHHHHHHHTCSEECSCHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHTSTTTCSEE-CCGGGSEECTT
T ss_pred             ccccchhhHHHHHHHHhhhcccCCccchhhccchHHHHHHHHHHHHHhHHHHHHHHHHHhcCchhhhc-ccccccccccc
Confidence            3444566778889999998655 56689999999999999999999999999999999998  76554 45788999999


Q ss_pred             CCCCCCchHHHHHHHHHHHHHHHhHHHHHHhhhhHhhhcccccCCCCCCccccchhhhhhccCCcchhhhhhccCCCCcc
Q psy14319        302 MAYKRNPMRSERLCSLARFLMSLHQNSLATASTQWMERTLDDSANRFPTKSVFSCVTQVKQHGKENDLVDRIRADPYFAP  381 (486)
Q Consensus       302 MPqKrNP~~~E~~~~~a~~~~g~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~g~~~d~~~~~~~~~~~~~  381 (486)
                      |||||||+.+|+++++|+++.|..+++..+...      ..                    .++++|+            
T Consensus       268 MP~KrNP~~~E~i~~~a~~v~g~~~~~~~~~~~------~~--------------------~~~~~d~------------  309 (449)
T d1tjva_         268 MPQKKNPDSLELIRSKAGRVFGRLASILMVLKG------LP--------------------STYNKDL------------  309 (449)
T ss_dssp             STTCEECHHHHHHHHHHHHHHHHHHHHHHHHTT------CC--------------------SSBCGGG------------
T ss_pred             cccccchHHHHHHHHHHHhHHHhhhhHHHHHhc------Cc--------------------hhhhchH------------
Confidence            999999999999999999999999887665321      11                    1233333            


Q ss_pred             ccccCCCCCCCccccCCchhHhhhhhhcccchHHHHHHHHHHHHHHHhchhCCeeCHHHHHHHHhccCChhHHHHHHHHH
Q psy14319        382 ILNQMPTLLDPKSFYGRAPEQQRLSAKGIHTLSESFLTTDCLLITLQNVLEGLVVYPKVIQRHIDQELPFMATENIIMAM  461 (486)
Q Consensus       382 ~~~~~~~~~~p~~~~~~~~~q~~~~~~~~~~l~~~~~~~~~~l~~~~~~l~~l~v~~~~m~~~l~~~~~~~~a~~~~~~L  461 (486)
                                          |     ..|..+++++..+..++..+..++++++||+++|+++++   ++.+++++++.|
T Consensus       310 --------------------~-----~~~~~l~~~~~~~~~~L~~~~~~l~~l~vn~e~m~~~l~---~~~~at~la~~L  361 (449)
T d1tjva_         310 --------------------Q-----EDKEAVFDVVDTLTAVLQVATGVISTLQISKENMEKALT---PEMLATDLALYL  361 (449)
T ss_dssp             --------------------G-----GHHHHHHHHHHHHHHHHHHHHHHHHHCEECHHHHHHTCC---GGGGHHHHHHHH
T ss_pred             --------------------h-----hhhhhhhhHHHHHHHHHHHhhhccchhhcccccchhhhh---hhchHHHHHHHH
Confidence                                1     135678889999999999999999999999999999874   356899999999


Q ss_pred             HHcCCChHHHHHHHHHHHHHhhhc
Q psy14319        462 VKAGGDRQVCHEKIRVLSHQAGAQ  485 (486)
Q Consensus       462 ~~~g~~fr~Ah~~v~~~~~~a~~~  485 (486)
                      |++|+|||+||++|+++|+.|.++
T Consensus       362 v~kgipfr~Ah~~V~~~v~~A~~~  385 (449)
T d1tjva_         362 VRKGVPFRQAHTASGKAVHLAETK  385 (449)
T ss_dssp             HHTTCCHHHHHHHHHHHHHHHHHT
T ss_pred             HHcCCCHHHHHHHHHHHHHHHHHh
Confidence            999999999999999999999765

>d1f1oa_ a.127.1.1 (A:) Adenylosuccinate lyase {Bacillus subtilis [TaxId: 1423]}

class: All alpha proteins
fold: L-aspartase-like
superfamily: L-aspartase-like
family: L-aspartase/fumarase
domain: Adenylosuccinate lyase
species: Bacillus subtilis [TaxId: 1423]

Probab=99.97  E-value=5.6e-31  Score=273.45  Aligned_cols=187  Identities=24%  Similarity=0.336  Sum_probs=161.4

Q ss_pred             hhhhhHhccHHHHHHHHHHHhhhcCCCceeecccCcccccchhhhhhhhhhhhHHHHHHcCCCCCCCcccccccccHHHH
Q psy14319          2 KFYKYVLGDGDKVKALDRLVTKKAGFNSSHIITGQTYSRKVDVIVTGVLSSLGASIHKKAGFNSSHIITGQTYSRKVDVI   81 (486)
Q Consensus         2 ~~~~~~~~d~~r~~~~~~~~~~~~g~~~~~a~~g~~~~r~~d~~~~Gt~a~~~~~~a~~LGf~~~~~~~~av~~RD~~~e   81 (486)
                      +|.+.|.||.+|+.++.++++.+ ++||+ +.+|.... +.+          ..++++.|||..++.+ +++++||+++|
T Consensus       148 ~~~~~l~r~~~rL~~~~~~~~~~-~lGGA-~Gt~~~~~-~~~----------~~~~~~~lg~~~~~~~-~~~~~rd~~~e  213 (408)
T d1f1oa_         148 LWHEEMKRNLERFKQAKAGIEVG-KISGA-VGTYANID-PFV----------EQYVCEKLGLKAAPIS-TQTLQRDRHAD  213 (408)
T ss_pred             HHHHHHHHHHHHHHHHHHhhhcc-ccchh-hhcccCCC-hhH----------HHHHHHHhcCcCCCch-HHHHHHHHHHH
Confidence            68999999999999999999853 44342 23333331 122          4689999999866533 34558999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHh--ccccccccccCCCCCccCCCCCCchHHHHHHHHHHHHHHHHHHHHHhhcccccc
Q psy14319         82 VTGVLSSLGASIHKLATDLRLLAH--MKEIEEPFESTQIGSSAMAYKRNPMRSERLCSLARFLMSLHQNSLATASTQWME  159 (486)
Q Consensus        82 ~~~~la~la~~LsRlA~DL~l~ss--~~el~e~~~~~~~GSSiMPqKrNP~~~E~ir~~a~~v~g~~~~~l~~~~~~~~e  159 (486)
                      ++++++.++++++|||+|+++|++  ++++.|+++++++|||||||||||+.+|.++++++.+.|.... ++.+++++||
T Consensus       214 ~~~~l~~la~~l~kia~Dl~~~~s~~~~~~~e~~~~~~~GSSiMP~K~NP~~~E~v~~~~~~~~g~~~~-~~~~~~~~~e  292 (408)
T d1f1oa_         214 YMATLALIATSIEKFAVEIRGLQKSETREVEEFFAKGQKGSSAMPHKRNPIGSENMTGMARVIRGYMMT-AYENVPLWHE  292 (408)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhcccceeeecccCCCCCcccccccccccHHHHHHHHhccchhhHHH-HHHhccchhh
Confidence            999999999999999999999996  8888888888999999999999999999999999999999875 4566889999


Q ss_pred             CCCchhhHhhhchHHHHHHHHHHHHHHHHhhhccccCHHhhhhh
Q psy14319        160 RTLDDSANRRLTLSESFLTTDCLLITLQNVLEGLVVYPKETYSI  203 (486)
Q Consensus       160 rDl~~~~~~~~~l~~a~~~~~~~l~~~~~vl~~l~vn~erm~~~  203 (486)
                      ||+++|..+|..+++++..+..++..+..++++++||+++|++.
T Consensus       293 rd~~~~~~~~~~l~~~~~~~~~~l~~~~~~l~~l~vn~e~m~~n  336 (408)
T d1f1oa_         293 RDISHSSAERIILPDATIALNYMLNRFSNIVKNLTVFPENMKRN  336 (408)
T ss_pred             ccchhhHHHhhcchhHHHHHHHHHHHHHHHhhCCeeCHHHHHHH
Confidence            99999999999999999999999999999999999999999973

>d1c3ca_ a.127.1.1 (A:) Adenylosuccinate lyase {Thermotoga maritima [TaxId: 2336]}

class: All alpha proteins
fold: L-aspartase-like
superfamily: L-aspartase-like
family: L-aspartase/fumarase
domain: Adenylosuccinate lyase
species: Thermotoga maritima [TaxId: 2336]

Probab=99.97  E-value=1.2e-30  Score=272.73  Aligned_cols=187  Identities=22%  Similarity=0.327  Sum_probs=155.7

Q ss_pred             hhhhhHhccHHHHHHHHHHHhhhcCCCceeecccCcccccchhhhhhhhhhhhHHHHHHcCCCCCCCcccccccccHHHH
Q psy14319          2 KFYKYVLGDGDKVKALDRLVTKKAGFNSSHIITGQTYSRKVDVIVTGVLSSLGASIHKKAGFNSSHIITGQTYSRKVDVI   81 (486)
Q Consensus         2 ~~~~~~~~d~~r~~~~~~~~~~~~g~~~~~a~~g~~~~r~~d~~~~Gt~a~~~~~~a~~LGf~~~~~~~~av~~RD~~~e   81 (486)
                      +|.+.|.||.+|+.++.++++. .|++| ++.+|..++...+           .....++|+. +....+++.+||++++
T Consensus       155 ~~~~~l~r~~~rl~~~~~~~~~-~~~gg-a~g~~~~~~~~~~-----------~~~~~~~~~~-~~~~~~~~~~rd~~~e  220 (429)
T d1c3ca_         155 GWYSEMKRNVQRLERAIEEVSY-GKISG-AVGNYANVPPEVE-----------EKALSYLGLK-PEPVSTQVVPRDRHAF  220 (429)
T ss_dssp             HHHHHHHHHHHHHHHHHHHTCE-ECCCC-TTSSCSSSCHHHH-----------HHHHHHTTCE-ECSSCSSSCCTHHHHH
T ss_pred             HHHHHHHHHHHHHHHhhhhhhh-ccccc-ccccccccchhHH-----------HHHHHhhcCC-ccccchHhhcchhHHH
Confidence            6899999999999999999974 35533 4455566642222           2444455544 3334577889999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHh--ccccccccccCCCCCccCCCCCCchHHHHHHHHHHHHHHHHHHHHHhhcccccc
Q psy14319         82 VTGVLSSLGASIHKLATDLRLLAH--MKEIEEPFESTQIGSSAMAYKRNPMRSERLCSLARFLMSLHQNSLATASTQWME  159 (486)
Q Consensus        82 ~~~~la~la~~LsRlA~DL~l~ss--~~el~e~~~~~~~GSSiMPqKrNP~~~E~ir~~a~~v~g~~~~~l~~~~~~~~e  159 (486)
                      ++++++.++++|+|||+||++|++  |+|+.||+.++++|||||||||||+.+|+++++|+.+.|.... ++.+++.+||
T Consensus       221 ~~~~l~~~~~~L~kia~Dl~~~~~~e~gev~e~~~~~~~GSS~MP~K~NPv~~E~i~~~a~~~~g~~~~-~~~~~~~~~e  299 (429)
T d1c3ca_         221 YLSTLAIVAAGIERIAVEIRHLQRTEVLEVEEPFRKGQRGSSAMPHKKNPITCERLTGLSRMMRAYVDP-SLENIALWHE  299 (429)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHTSTTTCSEECCCCC-----CCCTTCCCCHHHHHHHHHHHHHHHTHHH-HHHTTCCSTT
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhhhcceEEeeccccCCCCccccccccCCchHHHHHHHHHHhcccHHH-HHHhcchhhc
Confidence            999999999999999999999996  9999999888999999999999999999999999999998886 5567889999


Q ss_pred             CCCchhhHhhhchHHHHHHHHHHHHHHHHhhhccccCHHhhhhh
Q psy14319        160 RTLDDSANRRLTLSESFLTTDCLLITLQNVLEGLVVYPKETYSI  203 (486)
Q Consensus       160 rDl~~~~~~~~~l~~a~~~~~~~l~~~~~vl~~l~vn~erm~~~  203 (486)
                      ||+++|..+|..+++++..+..++..+..++++++||++||++.
T Consensus       300 rd~~~~~~~~~~~~~~~~~~~~~l~~~~~~i~~L~vn~erm~~n  343 (429)
T d1c3ca_         300 RDISHSSVERYVFPDATQTLYYMIVTATNVVRNMKVNEERMKKN  343 (429)
T ss_dssp             CCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCEECHHHHHHH
T ss_pred             ccchhhhccccccchhHHHHHhHhhHHHHHhhccccchHHHHHH
Confidence            99999999999999999999999999999999999999999984

>d1re5a_ a.127.1.1 (A:) 3-carboxy-cis,cis-muconate cycloisomerase (CMLE) {Pseudomonas putida, strain KT2440 [TaxId: 303]}

class: All alpha proteins
fold: L-aspartase-like
superfamily: L-aspartase-like
family: L-aspartase/fumarase
domain: 3-carboxy-cis,cis-muconate cycloisomerase (CMLE)
species: Pseudomonas putida, strain KT2440 [TaxId: 303]

Probab=99.97  E-value=3e-30  Score=270.88  Aligned_cols=216  Identities=19%  Similarity=0.148  Sum_probs=166.7

Q ss_pred             hhhhhHhccHHHHHHHHHHHhhhcCCCceeecccCcccccchhhhhhhhhhhhHHHHHHcCCCCCCCcccccccccHHHH
Q psy14319          2 KFYKYVLGDGDKVKALDRLVTKKAGFNSSHIITGQTYSRKVDVIVTGVLSSLGASIHKKAGFNSSHIITGQTYSRKVDVI   81 (486)
Q Consensus         2 ~~~~~~~~d~~r~~~~~~~~~~~~g~~~~~a~~g~~~~r~~d~~~~Gt~a~~~~~~a~~LGf~~~~~~~~av~~RD~~~e   81 (486)
                      +|.+.|.||.+|+.++.++++. ++++| .+.++..++  .+..      -..+.+++.|||..+..++  +.+||++++
T Consensus       166 ~~~~~l~r~~~rL~~~~~~~~~-~~lgg-a~g~~~~~~--~~~~------~~~~~l~~~lgl~~~~~~~--~~~rd~~~e  233 (448)
T d1re5a_         166 GVLGALTRHRQRLQELRPRLLV-LQFGG-ASGSLAALG--SKAM------PVAEALAEQLKLTLPEQPW--HTQRDRLVE  233 (448)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHSB-CCCCC-TTSSCGGGG--GGHH------HHHHHHHHHHTCBCCSSCC--TTCCHHHHH
T ss_pred             HHHhhhhhHHHHHHHHHHhhhh-cccCc-Cccchhccc--chhH------HHHHHHHHHhCCCCCCCcc--hHhhhHHHH
Confidence            6999999999999999999874 34433 222333332  1110      1235788899998665544  458999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHh--ccccccccccCCCCCccCCCCCCchHHHHHHHHHHHHHHHHHHHHHhhcccccc
Q psy14319         82 VTGVLSSLGASIHKLATDLRLLAH--MKEIEEPFESTQIGSSAMAYKRNPMRSERLCSLARFLMSLHQNSLATASTQWME  159 (486)
Q Consensus        82 ~~~~la~la~~LsRlA~DL~l~ss--~~el~e~~~~~~~GSSiMPqKrNP~~~E~ir~~a~~v~g~~~~~l~~~~~~~~e  159 (486)
                      ++++++.++++++|||+|+++|++  ++++.+++..+++|||||||||||+.+|+++++|+++.|+... ++.+++++|+
T Consensus       234 ~~~~l~~~~~~l~kia~di~~l~~~~~~~~~e~~~~~~~GSSiMP~K~NP~~~E~i~~~a~~v~g~~~~-~~~~~~~~~e  312 (448)
T d1re5a_         234 FASVLGLVAGSLGKFGRDISLLMQTEAGEVFEPSAPGKGGSSTMPHKRNPVGAAVLIGAATRVPGLLST-LFAAMPQEHE  312 (448)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHTSTTTCCEECCCCC----------CCCCHHHHHHHHHHHHHHHHHHH-HHHTCCCCTT
T ss_pred             HHHHHHHHHhhHHHHHHHHHHhhhhhhhhhhccccccCCccchhhhccCcchHHHHHHHHHHHHHHHHH-HhhhcchhhH
Confidence            999999999999999999999995  8899888877889999999999999999999999999999886 4567889999


Q ss_pred             CCCchhhHhhhchHHHHHHHHHHHHHHHHhhhccccCHHhhhhhhcCCCCCCcccccccccCCCCCCCcHHHHHHHHHHH
Q psy14319        160 RTLDDSANRRLTLSESFLTTDCLLITLQNVLEGLVVYPKETYSIRIIPDNRLSSHHTTKRSGRPGDGDKVKALDRLVTKK  239 (486)
Q Consensus       160 rDl~~~~~~~~~l~~a~~~~~~~l~~~~~vl~~l~vn~erm~~~~~~~~~~g~~~~~~~~~~~~~~g~~~~~i~~~lA~~  239 (486)
                      ||+++|..+|..+++++..+..++..+..++++++||+++|++.....  .|.              ..++.+...+++.
T Consensus       313 rd~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~vn~~~m~~~l~~s--~~~--------------~~ae~~~~~L~~~  376 (448)
T d1re5a_         313 RSLGLWHAEWETLPDICCLVSGALRQAQVIAEGMEVDAARMRRNLDLT--QGL--------------VLAEAVSIVLAQR  376 (448)
T ss_dssp             BCSSTTTTHHHHHHHHHHHHHHHHHHHHHHHHHCEECHHHHHHHHTTS--TTG--------------GGHHHHHHHHHHH
T ss_pred             hhhhhhhhhhhhhhhhhHHHHHHHHhhhcccccCcccHHHHHHHHHhc--cCH--------------HHHHHHHHHHhhc
Confidence            999999999999999999999999999999999999999999843111  111              2356777778888


Q ss_pred             cCCCCCc
Q psy14319        240 AGFTSSH  246 (486)
Q Consensus       240 LGf~~a~  246 (486)
                      +||+.+|
T Consensus       377 ig~~~Ah  383 (448)
T d1re5a_         377 LGRDRAH  383 (448)
T ss_dssp             SCHHHHH
T ss_pred             CCHHHHH
Confidence            9988764

>d1vdka_ a.127.1.1 (A:) Fumarase {Thermus thermophilus [TaxId: 274]}

class: All alpha proteins
fold: L-aspartase-like
superfamily: L-aspartase-like
family: L-aspartase/fumarase
domain: Fumarase
species: Thermus thermophilus [TaxId: 274]

Probab=99.96  E-value=5.6e-30  Score=269.32  Aligned_cols=218  Identities=15%  Similarity=0.109  Sum_probs=175.8

Q ss_pred             hhhhhHhccHHHHHHHHHHHhhhcCCCceeecccCcccccchhhhhhhhhhhhHHHHHHcCCCCC--CCcccccccccHH
Q psy14319          2 KFYKYVLGDGDKVKALDRLVTKKAGFNSSHIITGQTYSRKVDVIVTGVLSSLGASIHKKAGFNSS--HIITGQTYSRKVD   79 (486)
Q Consensus         2 ~~~~~~~~d~~r~~~~~~~~~~~~g~~~~~a~~g~~~~r~~d~~~~Gt~a~~~~~~a~~LGf~~~--~~~~~av~~RD~~   79 (486)
                      +|++.|.||.+|++++.+++.. .+++| +|+.+..+.  .++    .......++++.|||..+  .+.++++++||++
T Consensus       200 ~~~~~l~r~~~RL~~~~~~l~~-~~lGG-aAvGt~~~~--~~~----~~~~~~~~la~~lGl~~~~~~n~~~~~~~rD~~  271 (460)
T d1vdka_         200 SWAAQLKTTLAAVKEMEKGLYN-LAIGG-TAVGTGLNA--HPR----FGELVAKYLAEETGLPFRVAENRFAALAAHDEL  271 (460)
T ss_dssp             HHHHHHHHHHHHHHHHHGGGGE-ECTTC-TTTSSCTTS--CTT----HHHHHHHHHHHHHSSCCEECSCTTHHHHCCHHH
T ss_pred             HHHHHHHHHHHHHHHHHhhhhh-hcCCC-ccccccccc--cch----hHHHHHHHHHHHhCcCccccCCchhheecchhH
Confidence            6999999999999999999985 35534 333222221  110    000113478999999755  3567999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHh--ccccccc-cccCCCCCccCCCCCCchHHHHHHHHHHHHHHHHHHHHHhhccc
Q psy14319         80 VIVTGVLSSLGASIHKLATDLRLLAH--MKEIEEP-FESTQIGSSAMAYKRNPMRSERLCSLARFLMSLHQNSLATASTQ  156 (486)
Q Consensus        80 ~e~~~~la~la~~LsRlA~DL~l~ss--~~el~e~-~~~~~~GSSiMPqKrNP~~~E~ir~~a~~v~g~~~~~l~~~~~~  156 (486)
                      ++++++++.++++|+|||+||++|++  ++++.|+ ++.+++|||||||||||+.+|.++++|.++.|+..++.+.+..+
T Consensus       272 ~e~~~~l~~la~~L~Kia~Dir~l~s~e~~~i~E~~~~~~q~GSSiMP~K~NPv~~E~v~~~~~~v~g~~~~i~~~~~~~  351 (460)
T d1vdka_         272 VNVMGAIRTLAGALMKIGNDVRWLASGPYAGIGEITIPANEPGSSIMPGKVNPTQVEALTMVVVRVYGNDHTVAFAGSQG  351 (460)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHTCBSSSSCCSEECCCCSCCSSCCTTCCCCHHHHHHHHHHHHHHHHHHHHHHHHTTC
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhhcchhceehhhhcccccCCCccccccCCCcHHHHHhhhhHHHHHHHHHHHHHHcCC
Confidence            99999999999999999999999996  7777764 56789999999999999999999999999999998877778888


Q ss_pred             cccCCCchhhHhhhchHHHHHHHHHHHHHHHHhhhccccCHHhhhhhhcCCCCCCcccccccccCCCCCCCcHHHHHHHH
Q psy14319        157 WMERTLDDSANRRLTLSESFLTTDCLLITLQNVLEGLVVYPKETYSIRIIPDNRLSSHHTTKRSGRPGDGDKVKALDRLV  236 (486)
Q Consensus       157 ~~erDl~~~~~~~~~l~~a~~~~~~~l~~~~~vl~~l~vn~erm~~~~~~~~~~g~~~~~~~~~~~~~~g~~~~~i~~~l  236 (486)
                      ++|+|...|..+|..+++++.+++.++.+...|+++|+||++||++....+                      ..+...+
T Consensus       352 ~~e~n~~~~~~~~~~l~~~~~l~~~~~~~~~~~~~gl~vn~~rm~~~l~~s----------------------~~l~taL  409 (460)
T d1vdka_         352 NFQLNVYKPVMAYSTLESINLLADAVASFDAHLAQGIEPNLERIEEYLQKN----------------------PMLATAL  409 (460)
T ss_dssp             BTTBCSCHHHHHHHHHHHHHHHHHHHHHHHHHTGGGCEECHHHHHHHHTTC----------------------GGGGHHH
T ss_pred             CccccccchHHHHhhhhHHHHHHHHHHHHHHHHHccCEECHHHHHHHHHcC----------------------hhHHHHH
Confidence            999999999999999999999999999999999999999999999843110                      1122346


Q ss_pred             HHHcCCCCCcccc
Q psy14319        237 TKKAGFTSSHIIT  249 (486)
Q Consensus       237 A~~LGf~~a~~~~  249 (486)
                      ++.+|++.++.+.
T Consensus       410 a~~ig~~~A~eiv  422 (460)
T d1vdka_         410 NKAIGYDKAAEIV  422 (460)
T ss_dssp             HHHHCSHHHHTTT
T ss_pred             hcCCCHHHHHHHH
Confidence            7888988766543

>d1yfma_ a.127.1.1 (A:) Fumarase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All alpha proteins
fold: L-aspartase-like
superfamily: L-aspartase-like
family: L-aspartase/fumarase
domain: Fumarase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.96  E-value=8.2e-30  Score=267.64  Aligned_cols=191  Identities=19%  Similarity=0.181  Sum_probs=158.2

Q ss_pred             hhhhhHhccHHHHHHHHHHHhhhcCCCceeec-ccCcccccchhhhhhhhhhhhHHHHHHcCCCCC--CCcccccccccH
Q psy14319          2 KFYKYVLGDGDKVKALDRLVTKKAGFNSSHII-TGQTYSRKVDVIVTGVLSSLGASIHKKAGFNSS--HIITGQTYSRKV   78 (486)
Q Consensus         2 ~~~~~~~~d~~r~~~~~~~~~~~~g~~~~~a~-~g~~~~r~~d~~~~Gt~a~~~~~~a~~LGf~~~--~~~~~av~~RD~   78 (486)
                      +|+++|.||.+|++++.+++... ++|| +++ +|-..+...+       ...-..+++.||+..+  .++.+++++||+
T Consensus       202 ~~~~~l~r~~~RL~~~~~~l~~~-~lGg-ta~gtg~~a~~~~~-------~~v~~~l~~~lgl~~~~~~n~~~a~~~rD~  272 (459)
T d1yfma_         202 GYVQQVENGIQRVAHSLKTLSFL-AQGG-TAVGTGLNTKPGFD-------VKIAEQISKETGLKFQTAPNRFEALAAHDA  272 (459)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHTEE-CTTC-TTTSSCTTSCTTHH-------HHHHHHHHHHHSSCCEECSCHHHHHHCCHH
T ss_pred             HHHHHHHHHHHHHHHHHHhhhhh-hccc-chhhccccCCCcch-------HHHHHHHHHHcCCCCcccCchHHHHcCChh
Confidence            69999999999999999999853 4433 333 2222221111       1112478888998755  456689999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHh-----ccccccccccCCCCCccCCCCCCchHHHHHHHHHHHHHHHHHHHHHhh
Q psy14319         79 DVIVTGVLSSLGASIHKLATDLRLLAH-----MKEIEEPFESTQIGSSAMAYKRNPMRSERLCSLARFLMSLHQNSLATA  153 (486)
Q Consensus        79 ~~e~~~~la~la~~LsRlA~DL~l~ss-----~~el~e~~~~~~~GSSiMPqKrNP~~~E~ir~~a~~v~g~~~~~l~~~  153 (486)
                      ++|++++|++++++|+|||+||++|++     |+|+  +++++++|||||||||||+.+|.++++|+++.|...++.+.+
T Consensus       273 ~~e~~~~L~~la~~L~Kia~Dlrll~s~~~~g~~El--~~~~~~~GSSiMP~K~NPv~~E~v~~~~~~v~G~~~~i~~~~  350 (459)
T d1yfma_         273 IVECSGALNTLACSLFKIAQDIRYLGSGPRCGYHEL--MLPENEPGSSIMPGKVNPTQNEALTQVCVQVMGNNAAITFAG  350 (459)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHTCCSSSSCCCE--ECCCCSCCCTTSTTCCCCHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhccceeeeEEee--ecccccccCcccccccChhhHHHHHHHHHHhccHhhHHHHHH
Confidence            999999999999999999999999985     3344  345689999999999999999999999999999988877777


Q ss_pred             ccccccCCCchhhHhhhchHHHHHHHHHHHHHHHHhhhccccCHHhhhhh
Q psy14319        154 STQWMERTLDDSANRRLTLSESFLTTDCLLITLQNVLEGLVVYPKETYSI  203 (486)
Q Consensus       154 ~~~~~erDl~~~~~~~~~l~~a~~~~~~~l~~~~~vl~~l~vn~erm~~~  203 (486)
                      ..+++++|...+..+|..++++..++..++.+...|+++|+||++||++.
T Consensus       351 ~~~~~e~n~~~~~~~~~~l~s~~~l~~~~~~~~~~~i~gl~vn~erm~~~  400 (459)
T d1yfma_         351 SQGQFELNVFKPVMIANLLNSIRLITDAAYSFRVHCVEGIKANEPRIHEL  400 (459)
T ss_dssp             HCCBTTBCSCHHHHHHHHHHHHHHHHHHHHHHHHHTGGGCEECHHHHHHH
T ss_pred             hcCcccccchhhHHHHHHHHHHHHHHHHHHHHHHHHhccCEECHHHHHHH
Confidence            88899999999999999999999999999999999999999999999883

>d1tjva_ a.127.1.1 (A:) Argininosuccinate lyase/delta-crystallin {Domestic duck (Anas platyrhynchos), delta-crystallin [TaxId: 8839]}

class: All alpha proteins
fold: L-aspartase-like
superfamily: L-aspartase-like
family: L-aspartase/fumarase
domain: Argininosuccinate lyase/delta-crystallin
species: Domestic duck (Anas platyrhynchos), delta-crystallin [TaxId: 8839]

Probab=99.96  E-value=2.4e-30  Score=271.67  Aligned_cols=183  Identities=16%  Similarity=0.158  Sum_probs=159.8

Q ss_pred             hhhhhHhccHHHHHHHHHHHhhhcCCCceeecccCcccccchhhhhhhhhhhhHHHHHHcCCCCCC-CcccccccccHHH
Q psy14319          2 KFYKYVLGDGDKVKALDRLVTKKAGFNSSHIITGQTYSRKVDVIVTGVLSSLGASIHKKAGFNSSH-IITGQTYSRKVDV   80 (486)
Q Consensus         2 ~~~~~~~~d~~r~~~~~~~~~~~~g~~~~~a~~g~~~~r~~d~~~~Gt~a~~~~~~a~~LGf~~~~-~~~~av~~RD~~~   80 (486)
                      +|++.|.||.+|+.++.++++.. ++ |.++++|+.++  +|          +++++++|||..+. ++.+++++||+++
T Consensus       159 ~~~~~l~r~~~rl~~~~~~~~~~-~l-Gg~a~~~~~~~--~~----------~~~~~~~l~~~~~~~~~~~~~~~rd~~~  224 (449)
T d1tjva_         159 SHAVALTRDSERLGEVKKRINVL-PL-GSGALAGNPLD--ID----------REMLRSELEFASISLNSMDAISERDFVV  224 (449)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHSEE-CT-TCTTTTCCTTC--CC----------HHHHHHHHTCSEECSCHHHHHHCCHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHhhhh-cc-cccccccccch--hh----------HHHHHHHHhhhcccCCccchhhccchHH
Confidence            69999999999999999999853 44 25778888886  77          46899999999886 5569999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHh--ccccccccccCCCCCccCCCCCCchHHHHHHHHHHHHHHHHHHHHH--hhccc
Q psy14319         81 IVTGVLSSLGASIHKLATDLRLLAH--MKEIEEPFESTQIGSSAMAYKRNPMRSERLCSLARFLMSLHQNSLA--TASTQ  156 (486)
Q Consensus        81 e~~~~la~la~~LsRlA~DL~l~ss--~~el~e~~~~~~~GSSiMPqKrNP~~~E~ir~~a~~v~g~~~~~l~--~~~~~  156 (486)
                      ++++++++++++|+|||+||++|++  |+++.. ++++++|||||||||||+.+|+++++|+++.|..+++..  .+.+.
T Consensus       225 e~~~~l~~la~~L~kia~Dl~l~~~~e~~~~e~-~~~~~~GSSiMP~KrNP~~~E~i~~~a~~v~g~~~~~~~~~~~~~~  303 (449)
T d1tjva_         225 EFLSFATLLMIHLSKMAEDLIIYSTSEFGFLTL-SDAFSTGSSLMPQKKNPDSLELIRSKAGRVFGRLASILMVLKGLPS  303 (449)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHTSTTTCSEEC-CGGGSEECTTSTTCEECHHHHHHHHHHHHHHHHHHHHHHHHTTCCS
T ss_pred             HHHHHHHHHHHhHHHHHHHHHHHhcCchhhhcc-cccccccccccccccchHHHHHHHHHHHhHHHhhhhHHHHHhcCch
Confidence            9999999999999999999999995  654433 346788999999999999999999999999999887543  46789


Q ss_pred             cccCCCchhhHhhhchHHHHHHHHHHHHHHHHhhhccccCHHhhhh
Q psy14319        157 WMERTLDDSANRRLTLSESFLTTDCLLITLQNVLEGLVVYPKETYS  202 (486)
Q Consensus       157 ~~erDl~~~~~~~~~l~~a~~~~~~~l~~~~~vl~~l~vn~erm~~  202 (486)
                      +|++|++..   +..+++++..+..++..+..++++++||+++|++
T Consensus       304 ~~~~d~~~~---~~~l~~~~~~~~~~L~~~~~~l~~l~vn~e~m~~  346 (449)
T d1tjva_         304 TYNKDLQED---KEAVFDVVDTLTAVLQVATGVISTLQISKENMEK  346 (449)
T ss_dssp             SBCGGGGGH---HHHHHHHHHHHHHHHHHHHHHHHHCEECHHHHHH
T ss_pred             hhhchHhhh---hhhhhhHHHHHHHHHHHhhhccchhhcccccchh
Confidence            999998765   5778899999999999999999999999999987

>d1fuoa_ a.127.1.1 (A:) Fumarase {Escherichia coli [TaxId: 562]}

class: All alpha proteins
fold: L-aspartase-like
superfamily: L-aspartase-like
family: L-aspartase/fumarase
domain: Fumarase
species: Escherichia coli [TaxId: 562]

Probab=99.96  E-value=1e-29  Score=267.10  Aligned_cols=194  Identities=17%  Similarity=0.098  Sum_probs=157.4

Q ss_pred             hhhhhHhccHHHHHHHHHHHhhhcCCCceeecccCcccccchhhhhhhhhhhhHHHHHHcC--CCCCCCcccccccccHH
Q psy14319          2 KFYKYVLGDGDKVKALDRLVTKKAGFNSSHIITGQTYSRKVDVIVTGVLSSLGASIHKKAG--FNSSHIITGQTYSRKVD   79 (486)
Q Consensus         2 ~~~~~~~~d~~r~~~~~~~~~~~~g~~~~~a~~g~~~~r~~d~~~~Gt~a~~~~~~a~~LG--f~~~~~~~~av~~RD~~   79 (486)
                      +|+++|.||.+|++++.+++.. ++++|  +..|+.++  .+...   ....-..++..+|  |....|+++++++||++
T Consensus       200 ~~~~~l~R~~~RL~~~~~r~~~-~~lGG--aa~Gt~~~--~~~~~---~~~~~~~l~~~~~~~~~~~~n~~~~~~~rD~~  271 (456)
T d1fuoa_         200 GWVAMLEHNLKHIEYSLPHVAE-LALGG--TAVGTGLN--THPEY---ARRVADELAVITCAPFVTAPNKFEALATCDAL  271 (456)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHTE-ECTTC--TTTSSCTT--SCTTH---HHHHHHHHHHHHTSCCEECSCHHHHHHCCHHH
T ss_pred             HHHHHHHHhHHHHHHHHHHHHH-hCCCC--CcccCccc--cChHH---HHHHHHHhhhcccCCceeccCHHHHHHhhhHH
Confidence            7999999999999999999985 35533  32355542  22110   0011124444444  44446678999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHh--cccccc-ccccCCCCCccCCCCCCchHHHHHHHHHHHHHHHHHHHHHhhccc
Q psy14319         80 VIVTGVLSSLGASIHKLATDLRLLAH--MKEIEE-PFESTQIGSSAMAYKRNPMRSERLCSLARFLMSLHQNSLATASTQ  156 (486)
Q Consensus        80 ~e~~~~la~la~~LsRlA~DL~l~ss--~~el~e-~~~~~~~GSSiMPqKrNP~~~E~ir~~a~~v~g~~~~~l~~~~~~  156 (486)
                      +|+++++++++++|+|||+|+++|++  ++|+.| +++.+++|||||||||||+.+|.++++|+++.|+..++.+.....
T Consensus       272 ~e~~~~la~la~~L~kia~Di~ll~s~~~~e~~e~~~~~~~~GSSiMP~K~NP~~~E~i~~~a~~v~g~~~~i~~~~~~~  351 (456)
T d1fuoa_         272 VQAHGALKGLAASLMKIANDVRWLASGPRCGIGEISIPENEPGSSIMPGKVNPTQCEALTMLCCQVMGNDVAINMGGASG  351 (456)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHTCCSSSSCCCEECCCCSCCCTTCTTCCCCHHHHHHHHHHHHHHHHHHHHHHHHHTC
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhHhhcchhhhccccccccchhcccccCchhHHHHHHHHHHhcchhhHHHHHHhcC
Confidence            99999999999999999999999985  666655 356789999999999999999999999999999988777777888


Q ss_pred             cccCCCchhhHhhhchHHHHHHHHHHHHHHHHhhhccccCHHhhhhh
Q psy14319        157 WMERTLDDSANRRLTLSESFLTTDCLLITLQNVLEGLVVYPKETYSI  203 (486)
Q Consensus       157 ~~erDl~~~~~~~~~l~~a~~~~~~~l~~~~~vl~~l~vn~erm~~~  203 (486)
                      ++++|...|..+|..++++......+..+...|+++|+||+++|++.
T Consensus       352 ~~e~n~~~~~~~~~~l~~~~~l~~~~~~~~~~~i~~l~vn~e~m~~~  398 (456)
T d1fuoa_         352 NFELNVFRPMVIHNFLQSVRLLADGMESFNKHCAVGIEPNRERINQL  398 (456)
T ss_dssp             BTTBCCCHHHHHHHHHHHHHHHHHHHHHHHHHTGGGCEECHHHHHHH
T ss_pred             chhhcccchHHHHHHHHHHHHHHHHHHHHHHHHHccCEECHHHHHHH
Confidence            99999999999999999998888899999999999999999999983

>d1q5na_ a.127.1.1 (A:) 3-carboxy-cis,cis-muconate cycloisomerase (CMLE) {Acinetobacter calcoaceticus [TaxId: 471]}

class: All alpha proteins
fold: L-aspartase-like
superfamily: L-aspartase-like
family: L-aspartase/fumarase
domain: 3-carboxy-cis,cis-muconate cycloisomerase (CMLE)
species: Acinetobacter calcoaceticus [TaxId: 471]

Probab=99.96  E-value=1.1e-29  Score=266.21  Aligned_cols=216  Identities=20%  Similarity=0.172  Sum_probs=163.5

Q ss_pred             hhhhhHhccHHHHHHHHHHHhhhcCCCceeecccCcccccchhhhhhhhhhhhHHHHHHcCCCCCCCcccccccccHHHH
Q psy14319          2 KFYKYVLGDGDKVKALDRLVTKKAGFNSSHIITGQTYSRKVDVIVTGVLSSLGASIHKKAGFNSSHIITGQTYSRKVDVI   81 (486)
Q Consensus         2 ~~~~~~~~d~~r~~~~~~~~~~~~g~~~~~a~~g~~~~r~~d~~~~Gt~a~~~~~~a~~LGf~~~~~~~~av~~RD~~~e   81 (486)
                      +|.+.|.||.+|+.++.++++.. +++| .+.+|+.++  .|+.      -..+.+++.||+..+...|  +.+||+++|
T Consensus       167 ~~~~~l~r~~~rL~~~~~~~~~~-~lgg-a~g~~~~~~--~~~~------~~~~~l~~~l~l~~~~~~~--~~~rd~~~e  234 (444)
T d1q5na_         167 RWASAFKRDLDRINAIKARVLVA-QLGG-AVGSLASLQ--DQGS------IVVEAYAKQLKLGQTACTW--HGERDRIVE  234 (444)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHSBC-CCCC-TTSSCGGGT--TCHH------HHHHHHHHHHTCBCCSSCC--SSCCHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHh-hccc-ccccccccc--chhH------HHHHHhhhcccccccccch--hhhhHHHHH
Confidence            68999999999999999999753 5545 455666665  3321      1234677778886655444  458999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHh--ccccccccccCCCCCccCCCCCCchHHHHHHHHHHHHHHHHHHHHHhhcccccc
Q psy14319         82 VTGVLSSLGASIHKLATDLRLLAH--MKEIEEPFESTQIGSSAMAYKRNPMRSERLCSLARFLMSLHQNSLATASTQWME  159 (486)
Q Consensus        82 ~~~~la~la~~LsRlA~DL~l~ss--~~el~e~~~~~~~GSSiMPqKrNP~~~E~ir~~a~~v~g~~~~~l~~~~~~~~e  159 (486)
                      ++++++.++++|+|||+|+++|++  ++++.++...+++|||||||||||+.+|.++++|+++.|.... +.....++++
T Consensus       235 ~~~~l~~~~~~L~kia~Dl~l~~~~e~~~~~e~~~~~~~GSSiMP~K~NP~~~E~i~~~a~~~~g~~~~-~~~~~~~~~~  313 (444)
T d1q5na_         235 IASVLGIITGNVGKMARDWSLMMQTEIAEVFEPTAKGRGGSSTMPHKRNPVAAASVLAAANRVPALMSS-IYQSMVQEHE  313 (444)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHTSTTTCCEECCC-------------CCCHHHHHHHHHHHHHHHHHHH-HHHTTCCCTT
T ss_pred             HHHHHhhhhhHHHHHHHHHHHhccccccccccccccccccchhhhhccCchhHHHHHHHHHhHHHHHHH-HHHHhhcchh
Confidence            999999999999999999999996  9999998877899999999999999999999999999998876 4455678899


Q ss_pred             CCCchhhHhhhchHHHHHHHHHHHHHHHHhhhccccCHHhhhhhhcCCCCCCcccccccccCCCCCCCcHHHHHHHHHHH
Q psy14319        160 RTLDDSANRRLTLSESFLTTDCLLITLQNVLEGLVVYPKETYSIRIIPDNRLSSHHTTKRSGRPGDGDKVKALDRLVTKK  239 (486)
Q Consensus       160 rDl~~~~~~~~~l~~a~~~~~~~l~~~~~vl~~l~vn~erm~~~~~~~~~~g~~~~~~~~~~~~~~g~~~~~i~~~lA~~  239 (486)
                      ||..+|..+|..+++++..+..++..+..++++|+||+++|++...+..  |+              ...+.+...+++.
T Consensus       314 ~~~~~~~~~~~~l~~~~~~~~~~l~~~~~~l~~l~vn~erm~~nle~s~--~~--------------i~se~~~~~L~~~  377 (444)
T d1q5na_         314 RSLGAWHAEWLSLPEIFQLTAGALERTLDVLKGMEVNAENMHQNIECTH--GL--------------IMAEAVMMALAPH  377 (444)
T ss_dssp             SCSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCEECHHHHHHHHHTTT--TG--------------GGHHHHHHHHHHH
T ss_pred             hcchhhhHHhhhhcccchhhhhHHHHHHhHHHHhcchhhHHHHHHHhcc--Ch--------------HHHHHHHHHhccC
Confidence            9999999999999999999999999999999999999999988431111  11              1235555567788


Q ss_pred             cCCCCCc
Q psy14319        240 AGFTSSH  246 (486)
Q Consensus       240 LGf~~a~  246 (486)
                      +||+.+|
T Consensus       378 ig~~~Ah  384 (444)
T d1q5na_         378 MGRLNAH  384 (444)
T ss_dssp             HCHHHHH
T ss_pred             CCHHHHH
Confidence            8887654

>d1vdka_ a.127.1.1 (A:) Fumarase {Thermus thermophilus [TaxId: 274]}

class: All alpha proteins
fold: L-aspartase-like
superfamily: L-aspartase-like
family: L-aspartase/fumarase
domain: Fumarase
species: Thermus thermophilus [TaxId: 274]

Probab=99.96  E-value=1.5e-29  Score=266.10  Aligned_cols=184  Identities=18%  Similarity=0.156  Sum_probs=156.6

Q ss_pred             CCcHHHHHHHHHHHcCCCCC--ccccccccCccHHHHHHHHHHHHHHHHHHHHHHHHHHhh--hhhcccc-ccCCCCcCc
Q psy14319        226 GDKVKALDRLVTKKAGFTSS--HIITGQTYSRKVDVIVTGVLSSLGASIHKLATDLRLLAH--MKEIEEP-FESTQIGSS  300 (486)
Q Consensus       226 g~~~~~i~~~lA~~LGf~~a--~~~~~~~~~rd~~~e~~~~l~~~~~~l~rla~Dl~l~ss--~~el~~~-~~~~~~GSS  300 (486)
                      ......+.+.+++.|||+..  .|.+.++++||+++|++++++.++++|+|||+||++|++  ++++.|+ ++.+++|||
T Consensus       237 ~~~~~~~~~~la~~lGl~~~~~~n~~~~~~~rD~~~e~~~~l~~la~~L~Kia~Dir~l~s~e~~~i~E~~~~~~q~GSS  316 (460)
T d1vdka_         237 PRFGELVAKYLAEETGLPFRVAENRFAALAAHDELVNVMGAIRTLAGALMKIGNDVRWLASGPYAGIGEITIPANEPGSS  316 (460)
T ss_dssp             TTHHHHHHHHHHHHHSSCCEECSCTTHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHTCBSSSSCCSEECCCCSCCSS
T ss_pred             chhHHHHHHHHHHHhCcCccccCCchhheecchhHHHHHHHHHHHHHHHHHHHHHHHHhhcchhceehhhhcccccCCCc
Confidence            33467788899999999743  367789999999999999999999999999999999999  7777774 578899999


Q ss_pred             CCCCCCCchHHHHHHHHHHHHHHHhHHHHHHhhhhHhhhcccccCCCCCCccccchhhhhhccCCcchhhhhhccCCCCc
Q psy14319        301 AMAYKRNPMRSERLCSLARFLMSLHQNSLATASTQWMERTLDDSANRFPTKSVFSCVTQVKQHGKENDLVDRIRADPYFA  380 (486)
Q Consensus       301 iMPqKrNP~~~E~~~~~a~~~~g~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~g~~~d~~~~~~~~~~~~  380 (486)
                      ||||||||+.+|.++++|.+++|+..++......+++|++...|                                    
T Consensus       317 iMP~K~NPv~~E~v~~~~~~v~g~~~~i~~~~~~~~~e~n~~~~------------------------------------  360 (460)
T d1vdka_         317 IMPGKVNPTQVEALTMVVVRVYGNDHTVAFAGSQGNFQLNVYKP------------------------------------  360 (460)
T ss_dssp             CCTTCCCCHHHHHHHHHHHHHHHHHHHHHHHHTTCBTTBCSCHH------------------------------------
T ss_pred             cccccCCCcHHHHHhhhhHHHHHHHHHHHHHHcCCCccccccch------------------------------------
Confidence            99999999999999999999999999988887777777765321                                    


Q ss_pred             cccccCCCCCCCccccCCchhHhhhhhhcccchHHHHHHHHHHHHHHHhchhCCeeCHHHHHHHHhccCChhHHHHHHHH
Q psy14319        381 PILNQMPTLLDPKSFYGRAPEQQRLSAKGIHTLSESFLTTDCLLITLQNVLEGLVVYPKVIQRHIDQELPFMATENIIMA  460 (486)
Q Consensus       381 ~~~~~~~~~~~p~~~~~~~~~q~~~~~~~~~~l~~~~~~~~~~l~~~~~~l~~l~v~~~~m~~~l~~~~~~~~a~~~~~~  460 (486)
                                             .   -+|..+++++.++++++.+...|+++|++|++||+++++.+.  ++++    .
T Consensus       361 -----------------------~---~~~~~l~~~~~l~~~~~~~~~~~~~gl~vn~~rm~~~l~~s~--~l~t----a  408 (460)
T d1vdka_         361 -----------------------V---MAYSTLESINLLADAVASFDAHLAQGIEPNLERIEEYLQKNP--MLAT----A  408 (460)
T ss_dssp             -----------------------H---HHHHHHHHHHHHHHHHHHHHHHTGGGCEECHHHHHHHHTTCG--GGGH----H
T ss_pred             -----------------------H---HHHhhhhHHHHHHHHHHHHHHHHHccCEECHHHHHHHHHcCh--hHHH----H
Confidence                                   1   146789999999999999999999999999999999998764  4444    3


Q ss_pred             HHHcCCChHHHHHHHHHH
Q psy14319        461 MVKAGGDRQVCHEKIRVL  478 (486)
Q Consensus       461 L~~~g~~fr~Ah~~v~~~  478 (486)
                      |.+. ++|++||++|+++
T Consensus       409 La~~-ig~~~A~eiv~~A  425 (460)
T d1vdka_         409 LNKA-IGYDKAAEIVKKA  425 (460)
T ss_dssp             HHHH-HCSHHHHTTTTTS
T ss_pred             HhcC-CCHHHHHHHHHHH
Confidence            5554 8999999988764

>d1jswa_ a.127.1.1 (A:) L-aspartate ammonia lyase {Escherichia coli [TaxId: 562]}

class: All alpha proteins
fold: L-aspartase-like
superfamily: L-aspartase-like
family: L-aspartase/fumarase
domain: L-aspartate ammonia lyase
species: Escherichia coli [TaxId: 562]

Probab=99.96  E-value=6.3e-29  Score=261.07  Aligned_cols=193  Identities=16%  Similarity=0.193  Sum_probs=162.4

Q ss_pred             hhhhhHhccHHHHHHHHHHHhhhcCCCceeecccCcc-cccchhhhhhhhhhhhHHHHHHcCCCCC--CCcccccccccH
Q psy14319          2 KFYKYVLGDGDKVKALDRLVTKKAGFNSSHIITGQTY-SRKVDVIVTGVLSSLGASIHKKAGFNSS--HIITGQTYSRKV   78 (486)
Q Consensus         2 ~~~~~~~~d~~r~~~~~~~~~~~~g~~~~~a~~g~~~-~r~~d~~~~Gt~a~~~~~~a~~LGf~~~--~~~~~av~~RD~   78 (486)
                      +|.+.|.||.+|++++.+++... ++|| +++.+... ++.       ........+++.+||...  .+..+++++||+
T Consensus       206 ~~~~~l~r~~~rl~~~~~~l~~~-~lGg-~A~gt~~~~~~~-------~~~~~~~~l~~~~g~~~~~~~~~~~~~~~rD~  276 (459)
T d1jswa_         206 AFSILLKEEVKNIQRTAELLLEV-NLGA-TAIGTGLNTPKE-------YSPLAVKKLAEVTGFPCVPAEDLIEATSDCGA  276 (459)
T ss_dssp             HHHHHHHHHHHHHHHHHHHTTEE-CCSC-CSSSSCSSCTTT-------HHHHHHHHHHHHHCCCCEECSCSSSBTTBCHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhc-cccc-cccccccccccc-------hhHHHHHHHHHhccccccccchhhhhhcchHH
Confidence            69999999999999999999853 4423 44432222 111       111123478899998754  345689999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHh--ccccccc-cccCCCCCccCCCCCCchHHHHHHHHHHHHHHHHHHHHHhhcc
Q psy14319         79 DVIVTGVLSSLGASIHKLATDLRLLAH--MKEIEEP-FESTQIGSSAMAYKRNPMRSERLCSLARFLMSLHQNSLATAST  155 (486)
Q Consensus        79 ~~e~~~~la~la~~LsRlA~DL~l~ss--~~el~e~-~~~~~~GSSiMPqKrNP~~~E~ir~~a~~v~g~~~~~l~~~~~  155 (486)
                      +++++++|++++++|+|||+||++|++  ++++.|+ ++++++|||||||||||+.+|.++++|.++.|+...+.+....
T Consensus       277 ~~e~~~~L~~la~~L~Kia~Dlrll~s~e~~~l~E~~lp~~q~GSSiMP~K~NPv~~E~v~~~~~~v~g~~~~i~~~~~~  356 (459)
T d1jswa_         277 YVMVHGALKRLAVKMSKICNDLRLLSSGPRAGLNEINLPELQAGSSIMPAKVNPVVPEVVNQVCFKVIGNDTTVTMAAEA  356 (459)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHCSTTTSCCCEECCCCSCCCSSCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhCCCeecceeccchhhccccHHHHHHHhhhhHhhHHHhhccccccccchhhhhhc
Confidence            999999999999999999999999996  8888776 5788999999999999999999999999999999887777788


Q ss_pred             ccccCCCchhhHhhhchHHHHHHHHHHHHHHHHhhhccccCHHhhhhh
Q psy14319        156 QWMERTLDDSANRRLTLSESFLTTDCLLITLQNVLEGLVVYPKETYSI  203 (486)
Q Consensus       156 ~~~erDl~~~~~~~~~l~~a~~~~~~~l~~~~~vl~~l~vn~erm~~~  203 (486)
                      ++++++...+...+..++.+..+++.++.++..|+++|+||+++|++.
T Consensus       357 ~~~e~n~~~~~~~~~ll~s~~~l~~~~~~~~~~~i~gl~vn~erm~~~  404 (459)
T d1jswa_         357 GQLQLNVMEPVIGQAMFESVHILTNACYNLLEKCINGITANKEVCEGY  404 (459)
T ss_dssp             CBTTBCTTHHHHHHHHHHHHHHHHHHHHHHHHHTGGGCEECHHHHHHH
T ss_pred             cCccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHccCEECHHHHHHH
Confidence            899999999999998888888889999999999999999999999984

>d1fuoa_ a.127.1.1 (A:) Fumarase {Escherichia coli [TaxId: 562]}

class: All alpha proteins
fold: L-aspartase-like
superfamily: L-aspartase-like
family: L-aspartase/fumarase
domain: Fumarase
species: Escherichia coli [TaxId: 562]

Probab=99.96  E-value=7.4e-29  Score=260.54  Aligned_cols=184  Identities=18%  Similarity=0.112  Sum_probs=150.7

Q ss_pred             HHHHHHHHHHHcCC--CCCccccccccCccHHHHHHHHHHHHHHHHHHHHHHHHHHhh--hhhccc-cccCCCCcCcCCC
Q psy14319        229 VKALDRLVTKKAGF--TSSHIITGQTYSRKVDVIVTGVLSSLGASIHKLATDLRLLAH--MKEIEE-PFESTQIGSSAMA  303 (486)
Q Consensus       229 ~~~i~~~lA~~LGf--~~a~~~~~~~~~rd~~~e~~~~l~~~~~~l~rla~Dl~l~ss--~~el~~-~~~~~~~GSSiMP  303 (486)
                      .......++..+++  ....|.++++++||+++|++++++.++.+|+|||+||++|++  ++|+.| +++.+++||||||
T Consensus       240 ~~~~~~~l~~~~~~~~~~~~n~~~~~~~rD~~~e~~~~la~la~~L~kia~Di~ll~s~~~~e~~e~~~~~~~~GSSiMP  319 (456)
T d1fuoa_         240 ARRVADELAVITCAPFVTAPNKFEALATCDALVQAHGALKGLAASLMKIANDVRWLASGPRCGIGEISIPENEPGSSIMP  319 (456)
T ss_dssp             HHHHHHHHHHHHTSCCEECSCHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHTCCSSSSCCCEECCCCSCCCTTCT
T ss_pred             HHHHHHHhhhcccCCceeccCHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhcchhhhccccccccchhcc
Confidence            44455556665554  455578899999999999999999999999999999999987  667666 4678899999999


Q ss_pred             CCCCchHHHHHHHHHHHHHHHhHHHHHHhhhhHhhhcccccCCCCCCccccchhhhhhccCCcchhhhhhccCCCCcccc
Q psy14319        304 YKRNPMRSERLCSLARFLMSLHQNSLATASTQWMERTLDDSANRFPTKSVFSCVTQVKQHGKENDLVDRIRADPYFAPIL  383 (486)
Q Consensus       304 qKrNP~~~E~~~~~a~~~~g~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~g~~~d~~~~~~~~~~~~~~~  383 (486)
                      |||||+.+|.++++|+++.|+.+++.......++|++...|                                       
T Consensus       320 ~K~NP~~~E~i~~~a~~v~g~~~~i~~~~~~~~~e~n~~~~---------------------------------------  360 (456)
T d1fuoa_         320 GKVNPTQCEALTMLCCQVMGNDVAINMGGASGNFELNVFRP---------------------------------------  360 (456)
T ss_dssp             TCCCCHHHHHHHHHHHHHHHHHHHHHHHHHTCBTTBCCCHH---------------------------------------
T ss_pred             cccCchhHHHHHHHHHHhcchhhHHHHHHhcCchhhcccch---------------------------------------
Confidence            99999999999999999999999888877776667654311                                       


Q ss_pred             ccCCCCCCCccccCCchhHhhhhhhcccchHHHHHHHHHHHHHHHhchhCCeeCHHHHHHHHhccCChhHHHHHHHHHHH
Q psy14319        384 NQMPTLLDPKSFYGRAPEQQRLSAKGIHTLSESFLTTDCLLITLQNVLEGLVVYPKVIQRHIDQELPFMATENIIMAMVK  463 (486)
Q Consensus       384 ~~~~~~~~p~~~~~~~~~q~~~~~~~~~~l~~~~~~~~~~l~~~~~~l~~l~v~~~~m~~~l~~~~~~~~a~~~~~~L~~  463 (486)
                                         ..    .|..++++..++.++..+...|+++|+||+++|+++++.+  +++++    +|++
T Consensus       361 -------------------~~----~~~~l~~~~~l~~~~~~~~~~~i~~l~vn~e~m~~~l~~s--~~l~t----aLa~  411 (456)
T d1fuoa_         361 -------------------MV----IHNFLQSVRLLADGMESFNKHCAVGIEPNRERINQLLNES--LMLVT----ALNT  411 (456)
T ss_dssp             -------------------HH----HHHHHHHHHHHHHHHHHHHHHTGGGCEECHHHHHHHHTTC--STTHH----HHHT
T ss_pred             -------------------HH----HHHHHHHHHHHHHHHHHHHHHHHccCEECHHHHHHHHHhc--hhHHH----Hhcc
Confidence                               11    3668889999999999999999999999999999999866  44544    3555


Q ss_pred             cCCChHHHHHHHHHHHHH
Q psy14319        464 AGGDRQVCHEKIRVLSHQ  481 (486)
Q Consensus       464 ~g~~fr~Ah~~v~~~~~~  481 (486)
                      . ++|++||++|++++++
T Consensus       412 ~-iG~~~A~eia~~a~~~  428 (456)
T d1fuoa_         412 H-IGYDKAAEIAKKAHKE  428 (456)
T ss_dssp             T-SCHHHHHHHHHHHHHH
T ss_pred             c-ccHHHHHHHHHHHHHh
Confidence            5 7899999998887765

>d1yfma_ a.127.1.1 (A:) Fumarase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All alpha proteins
fold: L-aspartase-like
superfamily: L-aspartase-like
family: L-aspartase/fumarase
domain: Fumarase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.96  E-value=6.5e-29  Score=260.78  Aligned_cols=190  Identities=18%  Similarity=0.130  Sum_probs=152.4

Q ss_pred             CCCCCcHHHHHHHHHHHcCCCCC--ccccccccCccHHHHHHHHHHHHHHHHHHHHHHHHHHhh---hhhccccccCCCC
Q psy14319        223 PGDGDKVKALDRLVTKKAGFTSS--HIITGQTYSRKVDVIVTGVLSSLGASIHKLATDLRLLAH---MKEIEEPFESTQI  297 (486)
Q Consensus       223 ~~~g~~~~~i~~~lA~~LGf~~a--~~~~~~~~~rd~~~e~~~~l~~~~~~l~rla~Dl~l~ss---~~el~~~~~~~~~  297 (486)
                      +........+.+.+++.+|+...  .|.++++++||+++|++++|+.++.+|+|||+||++|+|   +|..+.+++++++
T Consensus       236 ~a~~~~~~~v~~~l~~~lgl~~~~~~n~~~a~~~rD~~~e~~~~L~~la~~L~Kia~Dlrll~s~~~~g~~El~~~~~~~  315 (459)
T d1yfma_         236 NTKPGFDVKIAEQISKETGLKFQTAPNRFEALAAHDAIVECSGALNTLACSLFKIAQDIRYLGSGPRCGYHELMLPENEP  315 (459)
T ss_dssp             TSCTTHHHHHHHHHHHHHSSCCEECSCHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHTCCSSSSCCCEECCCCSC
T ss_pred             cCCCcchHHHHHHHHHHcCCCCcccCchHHHHcCChhHHHHHHHHHHHHHHHHHHHHHHHHhccceeeeEEeeecccccc
Confidence            34445567788889999998743  356778999999999999999999999999999999987   3333334678999


Q ss_pred             cCcCCCCCCCchHHHHHHHHHHHHHHHhHHHHHHhhhhHhhhcccccCCCCCCccccchhhhhhccCCcchhhhhhccCC
Q psy14319        298 GSSAMAYKRNPMRSERLCSLARFLMSLHQNSLATASTQWMERTLDDSANRFPTKSVFSCVTQVKQHGKENDLVDRIRADP  377 (486)
Q Consensus       298 GSSiMPqKrNP~~~E~~~~~a~~~~g~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~g~~~d~~~~~~~~~  377 (486)
                      |||||||||||+.+|.++++|.++.|..+++......+++|++...|                                 
T Consensus       316 GSSiMP~K~NPv~~E~v~~~~~~v~G~~~~i~~~~~~~~~e~n~~~~---------------------------------  362 (459)
T d1yfma_         316 GSSIMPGKVNPTQNEALTQVCVQVMGNNAAITFAGSQGQFELNVFKP---------------------------------  362 (459)
T ss_dssp             CCTTSTTCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCBTTBCSCHH---------------------------------
T ss_pred             cCcccccccChhhHHHHHHHHHHhccHhhHHHHHHhcCcccccchhh---------------------------------
Confidence            99999999999999999999999999999998887777787765321                                 


Q ss_pred             CCccccccCCCCCCCccccCCchhHhhhhhhcccchHHHHHHHHHHHHHHHhchhCCeeCHHHHHHHHhccCChhHHHHH
Q psy14319        378 YFAPILNQMPTLLDPKSFYGRAPEQQRLSAKGIHTLSESFLTTDCLLITLQNVLEGLVVYPKVIQRHIDQELPFMATENI  457 (486)
Q Consensus       378 ~~~~~~~~~~~~~~p~~~~~~~~~q~~~~~~~~~~l~~~~~~~~~~l~~~~~~l~~l~v~~~~m~~~l~~~~~~~~a~~~  457 (486)
                                               +    -.|..++++..++.++..+...|+++|+||++||+++++.+.+  +++  
T Consensus       363 -------------------------~----~~~~~l~s~~~l~~~~~~~~~~~i~gl~vn~erm~~~l~~s~~--l~t--  409 (459)
T d1yfma_         363 -------------------------V----MIANLLNSIRLITDAAYSFRVHCVEGIKANEPRIHELLTKSLM--LVT--  409 (459)
T ss_dssp             -------------------------H----HHHHHHHHHHHHHHHHHHHHHHTGGGCEECHHHHHHHHHHCSG--GGT--
T ss_pred             -------------------------H----HHHHHHHHHHHHHHHHHHHHHHHhccCEECHHHHHHHHHhCcc--HHH--
Confidence                                     1    1467889999999999999999999999999999999987643  322  


Q ss_pred             HHHHHHcCCChHHHHHHHHHHHHH
Q psy14319        458 IMAMVKAGGDRQVCHEKIRVLSHQ  481 (486)
Q Consensus       458 ~~~L~~~g~~fr~Ah~~v~~~~~~  481 (486)
                        +|+++ ++++.||+++++++++
T Consensus       410 --aL~~~-iGy~~A~~ia~~a~~~  430 (459)
T d1yfma_         410 --ALNPK-IGYDAASKVAKNAHKK  430 (459)
T ss_dssp             --TTGGG-TCHHHHHHHHHHHHHH
T ss_pred             --Hhcch-hhHHHHHHHHHHHHHh
Confidence              34444 5566666666665543

>d1j3ua_ a.127.1.1 (A:) L-aspartate ammonia lyase {Bacillus sp., ym55-1 [TaxId: 1409]}

class: All alpha proteins
fold: L-aspartase-like
superfamily: L-aspartase-like
family: L-aspartase/fumarase
domain: L-aspartate ammonia lyase
species: Bacillus sp., ym55-1 [TaxId: 1409]

Probab=99.95  E-value=5.7e-29  Score=261.92  Aligned_cols=194  Identities=15%  Similarity=0.134  Sum_probs=157.2

Q ss_pred             hhhhhHhccHHHHHHHHHHHhhhcCCCceeecccCcccccchhhhhhhhhhhhHHHHHHcCCCCC--CCcccccccccHH
Q psy14319          2 KFYKYVLGDGDKVKALDRLVTKKAGFNSSHIITGQTYSRKVDVIVTGVLSSLGASIHKKAGFNSS--HIITGQTYSRKVD   79 (486)
Q Consensus         2 ~~~~~~~~d~~r~~~~~~~~~~~~g~~~~~a~~g~~~~r~~d~~~~Gt~a~~~~~~a~~LGf~~~--~~~~~av~~RD~~   79 (486)
                      +|+++|.||.+|++++.+++... ++ |.+++.+..++  .+.    ........+++.+|+...  .++.+++++||++
T Consensus       199 ~~~~~l~r~~~RL~~~~~~l~~~-~l-Gg~a~g~~~~~--~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~rD~~  270 (462)
T d1j3ua_         199 AYARVIARDIERIANTRNNLYDI-NM-GATAVGTGLNA--DPE----YISIVTEHLAKFSGHPLRSAQHLVDATQNTDCY  270 (462)
T ss_dssp             HHHHHHHHHHHHHHHTTGGGSEE-CT-TCTTTSSCTTC--CHH----HHHHHHHHHHHHHCSCCEECSSHHHHHHCCHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhh-hc-cccccccccCC--cch----hhhhhhHhHhhhhccccccccchHHHhhhhHHH
Confidence            79999999999999999999743 54 24555444442  111    000112255666776543  4566999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHh--cccccccc-ccCCCCCccCCCCCCchHHHHHHHHHHHHHHHHHHHHHhhccc
Q psy14319         80 VIVTGVLSSLGASIHKLATDLRLLAH--MKEIEEPF-ESTQIGSSAMAYKRNPMRSERLCSLARFLMSLHQNSLATASTQ  156 (486)
Q Consensus        80 ~e~~~~la~la~~LsRlA~DL~l~ss--~~el~e~~-~~~~~GSSiMPqKrNP~~~E~ir~~a~~v~g~~~~~l~~~~~~  156 (486)
                      +|+++++++++++|+|||+||++|++  ++++.|++ ++.++|||||||||||+.+|.++++|+++.|+...++......
T Consensus       271 ~e~~~~L~~la~~L~Kia~Di~ll~s~e~~~i~E~~~~~~~~GSSiMP~KrNP~~~E~v~~~a~~v~G~~~~~~~~~~~~  350 (462)
T d1j3ua_         271 TEVSSALKVCMINMSKIANDLRLMASGPRAGLSEIVLPARQPGSSIMPGKVNPVMPEVMNQVAFQVFGNDLTITSASEAG  350 (462)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHTCCSTTSCCCEECCCCSCCCSSCTTCCCCHHHHHHHHHHHHHHHHHHHHHHHHHTC
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhCCcccceeeecccccccchhhhccccCChhHhhhhhhHhcccCccchhhhhhhcc
Confidence            99999999999999999999999996  88887755 4678999999999999999999999999999988777667778


Q ss_pred             cccCCCchhhHhhhchHHHHHHHHHHHHHHHHhhhccccCHHhhhhh
Q psy14319        157 WMERTLDDSANRRLTLSESFLTTDCLLITLQNVLEGLVVYPKETYSI  203 (486)
Q Consensus       157 ~~erDl~~~~~~~~~l~~a~~~~~~~l~~~~~vl~~l~vn~erm~~~  203 (486)
                      +++++...+...+..++.+..++..+..+...|+++|+||++||++.
T Consensus       351 ~~e~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~l~gl~vn~erm~~~  397 (462)
T d1j3ua_         351 QFELNVMEPVLFFNLIQSISIMTNVFKSFTENCLKGIKANEERMKEY  397 (462)
T ss_dssp             BTTBCTTHHHHHHHHHHHHHHHHHHHHHHHHTTGGGCEECHHHHHHH
T ss_pred             chhhcccchhhhhhhhhHHHHHHHHHHHHHHHHHccCEECHHHHHHH
Confidence            89999988888888887777888888888888999999999999984

>d1jswa_ a.127.1.1 (A:) L-aspartate ammonia lyase {Escherichia coli [TaxId: 562]}

class: All alpha proteins
fold: L-aspartase-like
superfamily: L-aspartase-like
family: L-aspartase/fumarase
domain: L-aspartate ammonia lyase
species: Escherichia coli [TaxId: 562]

Probab=99.95  E-value=1.1e-27  Score=251.65  Aligned_cols=182  Identities=16%  Similarity=0.179  Sum_probs=150.3

Q ss_pred             cHHHHHHHHHHHcCCCC--CccccccccCccHHHHHHHHHHHHHHHHHHHHHHHHHHhh--hhhcccc-ccCCCCcCcCC
Q psy14319        228 KVKALDRLVTKKAGFTS--SHIITGQTYSRKVDVIVTGVLSSLGASIHKLATDLRLLAH--MKEIEEP-FESTQIGSSAM  302 (486)
Q Consensus       228 ~~~~i~~~lA~~LGf~~--a~~~~~~~~~rd~~~e~~~~l~~~~~~l~rla~Dl~l~ss--~~el~~~-~~~~~~GSSiM  302 (486)
                      ....+...+++.+|+..  ..+.++++++||++++++++|+.++++|+|||+||++|++  ++++.|+ ++++++|||||
T Consensus       245 ~~~~~~~~l~~~~g~~~~~~~~~~~~~~~rD~~~e~~~~L~~la~~L~Kia~Dlrll~s~e~~~l~E~~lp~~q~GSSiM  324 (459)
T d1jswa_         245 YSPLAVKKLAEVTGFPCVPAEDLIEATSDCGAYVMVHGALKRLAVKMSKICNDLRLLSSGPRAGLNEINLPELQAGSSIM  324 (459)
T ss_dssp             HHHHHHHHHHHHHCCCCEECSCSSSBTTBCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCSTTTSCCCEECCCCSCCCSSC
T ss_pred             hhHHHHHHHHHhccccccccchhhhhhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCeecceeccchhhccccHHH
Confidence            35667778899999874  3367889999999999999999999999999999999999  8888886 57899999999


Q ss_pred             CCCCCchHHHHHHHHHHHHHHHhHHHHHHhhhhHhhhcccccCCCCCCccccchhhhhhccCCcchhhhhhccCCCCccc
Q psy14319        303 AYKRNPMRSERLCSLARFLMSLHQNSLATASTQWMERTLDDSANRFPTKSVFSCVTQVKQHGKENDLVDRIRADPYFAPI  382 (486)
Q Consensus       303 PqKrNP~~~E~~~~~a~~~~g~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~g~~~d~~~~~~~~~~~~~~  382 (486)
                      ||||||+.+|.++++|.+++|+..++.......++|++...+                                      
T Consensus       325 P~K~NPv~~E~v~~~~~~v~g~~~~i~~~~~~~~~e~n~~~~--------------------------------------  366 (459)
T d1jswa_         325 PAKVNPVVPEVVNQVCFKVIGNDTTVTMAAEAGQLQLNVMEP--------------------------------------  366 (459)
T ss_dssp             CCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHTCBTTBCTTHH--------------------------------------
T ss_pred             HHHHhhhhHhhHHHhhccccccccchhhhhhccCccchhhHH--------------------------------------
Confidence            999999999999999999999999998887776777654211                                      


Q ss_pred             cccCCCCCCCccccCCchhHhhhhhhcccchHHHHHHHHHHHHHHHhchhCCeeCHHHHHHHHhccCChhHHHHHHHHHH
Q psy14319        383 LNQMPTLLDPKSFYGRAPEQQRLSAKGIHTLSESFLTTDCLLITLQNVLEGLVVYPKVIQRHIDQELPFMATENIIMAMV  462 (486)
Q Consensus       383 ~~~~~~~~~p~~~~~~~~~q~~~~~~~~~~l~~~~~~~~~~l~~~~~~l~~l~v~~~~m~~~l~~~~~~~~a~~~~~~L~  462 (486)
                                          .    -.|..++++..++.+++.++..|+++|+||+|+|+++++.+.+  +++    +|+
T Consensus       367 --------------------~----~~~~ll~s~~~l~~~~~~~~~~~i~gl~vn~erm~~~l~~s~~--Lat----aL~  416 (459)
T d1jswa_         367 --------------------V----IGQAMFESVHILTNACYNLLEKCINGITANKEVCEGYVYNSIG--IVT----YLN  416 (459)
T ss_dssp             --------------------H----HHHHHHHHHHHHHHHHHHHHHHTGGGCEECHHHHHHHHTTCTT--CGG----GTH
T ss_pred             --------------------H----HHHHHHHHHHHHHHHHHHHHHHHHccCEECHHHHHHHHHhhHH--HHH----Hhc
Confidence                                1    1356788888899999999999999999999999999987644  433    455


Q ss_pred             HcCCChHHHHHHHHHH
Q psy14319        463 KAGGDRQVCHEKIRVL  478 (486)
Q Consensus       463 ~~g~~fr~Ah~~v~~~  478 (486)
                      +. ++++.||++++.+
T Consensus       417 p~-iG~~~a~~iak~A  431 (459)
T d1jswa_         417 PF-IGHHNGDIVGKIC  431 (459)
T ss_dssp             HH-HCHHHHHHHHHHH
T ss_pred             ch-hhhHHHHHHHHHH
Confidence            55 4566666655443

>d1dofa_ a.127.1.1 (A:) Adenylosuccinate lyase {Archaeon Pyrobaculum aerophilum [TaxId: 13773]}

class: All alpha proteins
fold: L-aspartase-like
superfamily: L-aspartase-like
family: L-aspartase/fumarase
domain: Adenylosuccinate lyase
species: Archaeon Pyrobaculum aerophilum [TaxId: 13773]

Probab=99.95  E-value=1.1e-27  Score=248.15  Aligned_cols=184  Identities=26%  Similarity=0.378  Sum_probs=142.6

Q ss_pred             hhhhhHhccHHHHHHHHHHHhhhcCCCceeecccCcccccchhhhhhhhhhhhHHHHHHcCCCCCCCcccccccccHHHH
Q psy14319          2 KFYKYVLGDGDKVKALDRLVTKKAGFNSSHIITGQTYSRKVDVIVTGVLSSLGASIHKKAGFNSSHIITGQTYSRKVDVI   81 (486)
Q Consensus         2 ~~~~~~~~d~~r~~~~~~~~~~~~g~~~~~a~~g~~~~r~~d~~~~Gt~a~~~~~~a~~LGf~~~~~~~~av~~RD~~~e   81 (486)
                      +|++.|.||.+|++...++...++|  |+.. ++..++ +.++.       .-..+++.||+..++ ..+++++||++++
T Consensus       157 ~~~~~l~r~~~rl~~~~~~~~~~~g--Ga~g-~~~~~~-~~~~~-------~~~~l~~~lgl~~~~-~~~~~~~rd~~~e  224 (402)
T d1dofa_         157 NYYYELYIACRQLALAEEFIRAKIG--GAVG-TMASWG-ELGLE-------VRRRVAERLGLPHHV-ITTQVAPRESFAV  224 (402)
T ss_dssp             HHHHHHHHHHHHHHHHHHHCCBCCC--CTTS-SCGGGG-GGHHH-------HHHHHHHHTTCCBCS-SCSSSCCHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHhhccc--cccc-cccccc-chhhH-------HHHHHHHHhcccccc-hhhhhhhhhhhhH
Confidence            6899999999999887766543333  3222 223332 23321       123667777775433 2357889999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHh--ccccccccccCCCCCccCCCCCCchHHHHHHHHHHHHHHHHHHHHHhhcccccc
Q psy14319         82 VTGVLSSLGASIHKLATDLRLLAH--MKEIEEPFESTQIGSSAMAYKRNPMRSERLCSLARFLMSLHQNSLATASTQWME  159 (486)
Q Consensus        82 ~~~~la~la~~LsRlA~DL~l~ss--~~el~e~~~~~~~GSSiMPqKrNP~~~E~ir~~a~~v~g~~~~~l~~~~~~~~e  159 (486)
                      +++++++++++|+|||+|+++|++  |+|+.+    +++||||||||+||+.+|.++++|+.+.|+.. ..+..+.++||
T Consensus       225 ~~~~L~~~a~~L~kia~Di~~~s~~e~ge~~e----~~~GSS~MP~K~NP~~~E~i~~~a~~~~g~~~-~~~~~~~~~~e  299 (402)
T d1dofa_         225 LASALALMAAVFERLAVEIRELSRPEIGEVVE----GGGGSSAMPHKANPTASERIVSLARYVRALTH-VAFENVALWHE  299 (402)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHTSTTTCSEES----CC---------CCCHHHHHHHHHHHHHHHHHH-HHHHTTCCCTT
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhCCccccccc----ccCccccccCCCCchHHHHHhchHHHHHHHHH-HHHHhhccccc
Confidence            999999999999999999999995  999965    46799999999999999999999999999865 46677889999


Q ss_pred             CCCchhhHhhhchHHHHHHHHHHHHHHHHhhhccccCHHhhhh
Q psy14319        160 RTLDDSANRRLTLSESFLTTDCLLITLQNVLEGLVVYPKETYS  202 (486)
Q Consensus       160 rDl~~~~~~~~~l~~a~~~~~~~l~~~~~vl~~l~vn~erm~~  202 (486)
                      ||+++|..+|..+++++..+..++..+..++++|+||++||++
T Consensus       300 rd~~~~~~~~~~l~~~~~~~~~~l~~~~~~l~~l~vn~erm~~  342 (402)
T d1dofa_         300 RDLTNSANERVWIPEALLALDEILTSALRVLKNVYIDEERITE  342 (402)
T ss_dssp             CCGGGHHHHHHHHHHHHHHHHHHHHHHHHHHHHCEECHHHHHH
T ss_pred             ccchhhhhhhhccchhHHHHHHHHHHHHHHHccCEECHHHHHH
Confidence            9999999999999999999999999999999999999999987

>d1j3ua_ a.127.1.1 (A:) L-aspartate ammonia lyase {Bacillus sp., ym55-1 [TaxId: 1409]}

class: All alpha proteins
fold: L-aspartase-like
superfamily: L-aspartase-like
family: L-aspartase/fumarase
domain: L-aspartate ammonia lyase
species: Bacillus sp., ym55-1 [TaxId: 1409]

Probab=99.95  E-value=5.3e-28  Score=254.47  Aligned_cols=180  Identities=17%  Similarity=0.178  Sum_probs=146.5

Q ss_pred             HHHHHHHHHcCCC--CCccccccccCccHHHHHHHHHHHHHHHHHHHHHHHHHHhh--hhhccccc-cCCCCcCcCCCCC
Q psy14319        231 ALDRLVTKKAGFT--SSHIITGQTYSRKVDVIVTGVLSSLGASIHKLATDLRLLAH--MKEIEEPF-ESTQIGSSAMAYK  305 (486)
Q Consensus       231 ~i~~~lA~~LGf~--~a~~~~~~~~~rd~~~e~~~~l~~~~~~l~rla~Dl~l~ss--~~el~~~~-~~~~~GSSiMPqK  305 (486)
                      .....+.+.+++.  ...+.++++++||+++|++++|+.++++|+|||+||++|++  ++++.|++ ++.++||||||||
T Consensus       241 ~~~~~~~~~~~~~~~~~~~~~~~~~~rD~~~e~~~~L~~la~~L~Kia~Di~ll~s~e~~~i~E~~~~~~~~GSSiMP~K  320 (462)
T d1j3ua_         241 IVTEHLAKFSGHPLRSAQHLVDATQNTDCYTEVSSALKVCMINMSKIANDLRLMASGPRAGLSEIVLPARQPGSSIMPGK  320 (462)
T ss_dssp             HHHHHHHHHHCSCCEECSSHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHTCCSTTSCCCEECCCCSCCCSSCTTC
T ss_pred             hhhHhHhhhhccccccccchHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCcccceeeecccccccchhhhccc
Confidence            3344566677765  34467789999999999999999999999999999999998  88888865 5788999999999


Q ss_pred             CCchHHHHHHHHHHHHHHHhHHHHHHhhhhHhhhcccccCCCCCCccccchhhhhhccCCcchhhhhhccCCCCcccccc
Q psy14319        306 RNPMRSERLCSLARFLMSLHQNSLATASTQWMERTLDDSANRFPTKSVFSCVTQVKQHGKENDLVDRIRADPYFAPILNQ  385 (486)
Q Consensus       306 rNP~~~E~~~~~a~~~~g~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~g~~~d~~~~~~~~~~~~~~~~~  385 (486)
                      |||+.+|.++++|+++.|+..+++......+++++...                                          
T Consensus       321 rNP~~~E~v~~~a~~v~G~~~~~~~~~~~~~~e~~~~~------------------------------------------  358 (462)
T d1j3ua_         321 VNPVMPEVMNQVAFQVFGNDLTITSASEAGQFELNVME------------------------------------------  358 (462)
T ss_dssp             CCCHHHHHHHHHHHHHHHHHHHHHHHHHTCBTTBCTTH------------------------------------------
T ss_pred             cCChhHhhhhhhHhcccCccchhhhhhhccchhhcccc------------------------------------------
Confidence            99999999999999999999998887766666654321                                          


Q ss_pred             CCCCCCCccccCCchhHhhhhhhcccchHHHHHHHHHHHHHHHhchhCCeeCHHHHHHHHhccCChhHHHHHHHHHHHcC
Q psy14319        386 MPTLLDPKSFYGRAPEQQRLSAKGIHTLSESFLTTDCLLITLQNVLEGLVVYPKVIQRHIDQELPFMATENIIMAMVKAG  465 (486)
Q Consensus       386 ~~~~~~p~~~~~~~~~q~~~~~~~~~~l~~~~~~~~~~l~~~~~~l~~l~v~~~~m~~~l~~~~~~~~a~~~~~~L~~~g  465 (486)
                                      |.    ..|..++.+..++..+..+...|+++|+||+++|+++++.+.++++      .|.+. 
T Consensus       359 ----------------~~----~~~~~~~~~~~l~~~~~~~~~~~l~gl~vn~erm~~~l~~s~~l~t------aLa~~-  411 (462)
T d1j3ua_         359 ----------------PV----LFFNLIQSISIMTNVFKSFTENCLKGIKANEERMKEYVEKSIGIIT------AINPH-  411 (462)
T ss_dssp             ----------------HH----HHHHHHHHHHHHHHHHHHHHHTTGGGCEECHHHHHHHHHTCTTGGG------GTGGG-
T ss_pred             ----------------hh----hhhhhhhHHHHHHHHHHHHHHHHHccCEECHHHHHHHHHcCccHHH------HhhHH-
Confidence                            11    1356778888888888888899999999999999999998876443      35555 


Q ss_pred             CChHHHHHHHHHHH
Q psy14319        466 GDRQVCHEKIRVLS  479 (486)
Q Consensus       466 ~~fr~Ah~~v~~~~  479 (486)
                      ++++.||++++++.
T Consensus       412 ig~~~A~~i~~~A~  425 (462)
T d1j3ua_         412 VGYETAAKLAREAY  425 (462)
T ss_dssp             SHHHHHHHHHHTTT
T ss_pred             HHHHHHHHHHHHHH
Confidence            77888888876543