Psyllid ID: psy1431

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-------540-------550-------560-------570-------580-------590-------600-------610-------620-------630-------640-------650-------660-------670-------680-------690-------700-------710-------720-------730-------740-------750-------760-------770-------780-------790-------800-------810-------820-------830-------840-------850-------860-------870-------880-------890-------900-------910-------920-------930-------940-------950-------960-------970-------980-------990------1000------1010------1020------1030------1040---
KPTLHRGSSQHLKVSGRDTYTEEEKAVLLTTSKINNLNFVPFMNVDLAEKFQYAVPFTDKEGPLILSPKQKRDFVAWVRPSEFCSEPKMVAGEFVDYFSIKQTIVSDCSFVASLAVSALYERRFGKRLVTSIIYPRNRNKEPVYNPFGKYMVKLHLNGITRKVIIDDQLPMARFNQLLCSYSQNKNELWVSILEKAYMKVMGGYDFPGSNSPGIRRSFTTVDCLRIEFNPRLTWVLERNEPKNEQVKSRDELLSEKCHFLLSQALDADEAGLKDTAVQLYMQSIEMTKPTLHRGSSQHLKVSGRDTYTEEEKAVLLTTSKINNLNFVPFMNVDLAEKFQYAVPFTDKEGPLILSPKQKRDFVAWVRPSEFCSEPKMVAGEFVDYFSIKQTIVSDCSFVASLAVSALYERRFGKRLVTSIIYPRNRNKEPVYNPFGKYMVKLHLNGITRKVIIDDQLPMARFNQLLCSYSQNKNELWVSILEKAYMKVMGGYDFPGSNSTLHALNGLDTGAARAIRPNDARILTQTSVFENLFTRLHSRAMFWLPWCKREICLRMKKRERSRVDTMQSSVSWSQGLRLLQLKNPWSNVRWRGNYSELDRLHWTPELKRALNFDPNSASMFDNGIFWIDYESILRFYDVFYMNWNPGLFSHTFCVHQELTFEKKNGNSTNCVKTAKQLSIVVFDYVTFKPVIIRNSSLDYFGQWPPSTPAASPKRNFWILLTRHITQLEDFKQNREYITVLVYKNEGKRVYYPYDPPPYLDGVRINSPHYLCKIILNENSSRKYTLVVSQYEKMHTIYYTLRAYATCPFRLEKIENPYQFKEEVRIEIWSTYDLMFMFTSENAWRMRPSNDPPPYLDGVRINSPHYLCKIILNENSSRKYTLVVSQYEKMHTIYYTLRAYATCPFRLEKIENPYQFKEEISGEWKGLTAGGCPNYPATYPNNPRYQVTLDSRQSMDNTLLVFLKGPKQYSLGVKISCVRLDDETATAPFKTKDSGAYRSGFVAVEMDNLPSGTYEIMPSTFSPQQEGPFFLELKSSCSITISRIR
cccccccccccccccccccccHHHHHHHHHccccccccccccccccHHHHHccccccccccccccccccccccccEEEccccccccccEEEccccccccEEcccccccHHHHHHHHHHccHHHccccEEEEEEEccccccccccccccEEEEEEEEccEEEEEEEccccccccccEEEEEEccccccHHHHHHHHHHHHcccccccccccHHHHHHHccccccEEEEccccccHHHHHccccHHHHHHHHHHHccccccccccccccHHHccccccHHcccccccccccccccccccccccccccccHHHHHHHHcccccccccccccccccHHHHHHccccccccccccccccccccccccEEEccccccccccEEEcccccccccccccccccHHHHHHHHHHcccccccccEEEEEEEccccccccccccccEEEEEEEEccEEEEEEEEcccccccccEEEEEEccccccHHHHHHHHHHHHHcccccccccccccccccccccccEEEEEccccccccHHHHHHHHHHHHHccccEEccccccccccccccccEEEEEEEEEEEEEcccEEEEEEccccccccccccccccccccccHHHHHHHcccccccccccccEEEEEHHHHHHHccEEEEEcccccccccEEEEEEEEEEEcccccccccccccccEEEEEccccccccEEcccccccccccccccccccccEEEEEEEEcccHHHHHHccccccEEEEEEEEccEEEcccccccccccccEEEccEEEEEEEccccccccEEEEEEcccccccccEEEEEEEcccEEEEccccccccEEEEEEEEccccccEEEEEEcccccccccccccccccccEEcccccEEEEEEEccccccEEEEEEcccccccccEEEEEEEcccccccccccccEEEEEEEcEEEcccccccccccccccccccEEEEEcccccccEEEEEEEcccccEEEEEEEEEEEcccccccccccccccccccccEEEEEEEEcccccEEEEccccccccEEcEEEEEEccccccEEEcc
cccccccccccccccccccccccHHHHHHHHHHcccccccccccccHHHcccccccccccccccccccccccccEEEEccHHHccccEEEEcccccccccccccccHHHHHHHHHHHHHcHHHHHHHHHHHEcccccccccccccccEEEEEEEEEcccEEEEEEEcccccccccEEEEEEcccccHHHHHHHHHHHHHHccccEccccccHHHHHHHccccHHHHHcccccccHHHHHHHHHHHHHHHHHHHccccccEEEccccccHcccccccccccEEEEcccEEEEccccccEEEEEEEcccccEccccccccccccccccHHHHHHHHHcccEcccccccccccccccccccccEEEEEccHHHccccEEEEcccccccccccccccHHHHHHHHHHHHHHHHHHccHHHHEEEccccccccccccccEEEEEEEEEcccEEEEEEEcccccccccEEEEEEcccccHHHHHHHHHHHHHHccccccccccccHHHHHHHcccccHHccccccccHHHHHHHHHHHHccccccEEEEEcccccccccccccEEEEEEEEEEEccccccEEEEEEEccccEEEEcccccccccccccccHHHHHHcccccccccccccEEEEHHHHHHHccEEEEEEcccHcccccEEEEEEEEEcccEEEcccccccccccccccccccccHHcccccccccccccccccccccccEEEHEHHHHcHHHHHHcccccEEEEEEEEEcccccccEcccccccccccEEEcHHHHccEEccccccEEEEEEEccccccccEEEEEEEEEccccccccccccccccccccccccccccccEEEEEEcccccccccccccccccccccccccEEEEEEccccccEEEEEEEEEcccccccEEEEEEccccccccccccccEEEEEEEcEEcccccccccccccccccccEEEEEEccccccccEEEEEEccccEEEEEEEEEEEcccccccccHHHccccccccccEEEEEEEEccccEEEEEEccccccccccEEEEEEEcccccccccc
kptlhrgssqhlkvsgrdtytEEEKAVLLTTSkinnlnfvpfmnvdlaekfqyavpftdkegplilspkqkrdfvawvrpsefcsepkmvageFVDYFSIKQTIVSDCSFVASLAVSALYERRFGKRLVTsiiyprnrnkepvynpfgKYMVKLHLNGITrkviiddqlpmARFNQLLCSYSQNKNELWVSILEKAYMKVmggydfpgsnspgirrsfttvdclriefnprltwvlernepkneqvKSRDELLSEKCHFLLSQAldadeaglKDTAVQLYMQSIemtkptlhrgssqhlkvsgrdtytEEEKAVLLTTSkinnlnfvpfmnvdlaekfqyavpftdkegplilspkqkrdfvawvrpsefcsepkmvageFVDYFSIKQTIVSDCSFVASLAVSALYERRFGKRLVTsiiyprnrnkepvynpfgKYMVKLHLNGITrkviiddqlpmARFNQLLCSYSQNKNELWVSILEKAYMKVmggydfpgsnstlhalngldtgaarairpndarilTQTSVFENLFTRLHSRamfwlpwckrEICLRMKkrersrvdtmqssvswsqglrllqlknpwsnvrwrgnyseldrlhwtpelkralnfdpnsasmfdngifwIDYESILRFYDVFymnwnpglfshtfCVHQEltfekkngnstncvkTAKQLSIVVFDyvtfkpviirnssldyfgqwppstpaaspkrNFWILLTRHITQLEDFKQNREYITVLVYKnegkrvyypydpppyldgvrinspHYLCKIIlnenssrkYTLVVSQYEKMHTIYYTLRAYatcpfrlekienpyqfkEEVRIEIWSTYDLMFMFTsenawrmrpsndpppyldgvrinspHYLCKIIlnenssrkYTLVVSQYEKMHTIYYTLRAYatcpfrlekienpyqfkeeisgewkgltaggcpnypatypnnpryqvtldsrqSMDNTLLVFlkgpkqyslgvkiscvrlddetatapfktkdsgayrsGFVAVemdnlpsgtyeimpstfspqqegpfflelksscsitisrir
kptlhrgssqhlkvsgrdtytEEEKAVLLttskinnlnFVPFMNVDLAEKFQYAVPFTdkegplilspkqKRDFVAWVRPSEFCSEPKMVAGEFVDYFSIKQTIVSDCSFVASLAVSAlyerrfgkrlvtsiiyprnrnkepvynpFGKYMVKLHLNGITRKVIIDDQLPMARFNQLLCSYSQNKNELWVSILEKAYMKVMGGYDFPGSNSPGIRRSFTTVDCLRIEFnprltwvlernepkneqvKSRDELLSEKCHFLLSQALDADEAGLKDTAVQLYMQSIEmtkptlhrgssqhlkvsgrdtyTEEEKAVLLttskinnlnFVPFMNVDLAEKFQYAVPFTdkegplilspkqKRDFVAWVRPSEFCSEPKMVAGEFVDYFSIKQTIVSDCSFVASLAVSAlyerrfgkrlvtsiiyprnrnkepvynpFGKYMVKLHLNGITRKVIIDDQLPMARFNQLLCSYSQNKNELWVSILEKAYMKVMGGYDFPGSNSTLHALNGLDTGAARAIRPNDARILTQTSVFENLFTRLhsramfwlpwcKREICLRMKKrersrvdtmqssvswsqglrllqlknpwsnvrwRGNYSELDRLHWTPELKRALNFDPNSASMFDNGIFWIDYESILRFYDVFYMNWNPGLFSHTFCVHQELTFekkngnstncVKTAKQLSIVVFDYVTFKPVIIRNSSLDYFGQWPPSTPAASPKRNFWILLTRHITqledfkqnreYITVLVyknegkrvyYPYDPPPYLDGVRINSPHYLCKIILNENSSRKYTLVVSQYEKMHTIYYTLRAYATCPFRLEKIENPYQFKEEVRIEIWSTYDLMFMFTSENAWRMRPSNDPPPYLDGVRINSPHYLCKIILNENSSRKYTLVVSQYEKMHTIYYTLRAYATCPFRLEKIENPYQFKEEISGEWKGLTAGGCPNYPATYPNNPRYQVTLDSRQSMDNTLLVFlkgpkqyslGVKISCVRLDDetatapfktkdsgayrsgFVAVEMDNLPSGTYEIMPSTFSPQQEGPfflelksscsitisrir
KPTLHRGSSQHLKVSGRDTYTEEEKAVLLTTSKINNLNFVPFMNVDLAEKFQYAVPFTDKEGPLILSPKQKRDFVAWVRPSEFCSEPKMVAGEFVDYFSIKQTIVSDCSFVASLAVSALYERRFGKRLVTSIIYPRNRNKEPVYNPFGKYMVKLHLNGITRKVIIDDQLPMARFNQLLCSYSQNKNELWVSILEKAYMKVMGGYDFPGSNSPGIRRSFTTVDCLRIEFNPRLTWVLERNEPKNEQVKSRDELLSEKCHFLLSQALDADEAGLKDTAVQLYMQSIEMTKPTLHRGSSQHLKVSGRDTYTEEEKAVLLTTSKINNLNFVPFMNVDLAEKFQYAVPFTDKEGPLILSPKQKRDFVAWVRPSEFCSEPKMVAGEFVDYFSIKQTIVSDCSFVASLAVSALYERRFGKRLVTSIIYPRNRNKEPVYNPFGKYMVKLHLNGITRKVIIDDQLPMARFNQLLCSYSQNKNELWVSILEKAYMKVMGGYDFPGSNSTLHALNGLDTGAARAIRPNDARILTQTSVFENLFTRLHSRAMFWLPWCKREICLRMKKRERSRVDTMQSSVSWSQGLRLLQLKNPWSNVRWRGNYSELDRLHWTPELKRALNFDPNSASMFDNGIFWIDYESILRFYDVFYMNWNPGLFSHTFCVHQELTFEKKNGNSTNCVKTAKQLSIVVFDYVTFKPVIIRNSSLDYFGQWPPSTPAASPKRNFWILLTRHITQLEDFKQNREYITVLVYKNEGKRVyypydpppyLDGVRINSPHYLCKIILNENSSRKYTLVVSQYEKMHTIYYTLRAYATCPFRLEKIENPYQFKEEVRIEIWSTYDLMFMFTSENAWRMRPSNDPPPYLDGVRINSPHYLCKIILNENSSRKYTLVVSQYEKMHTIYYTLRAYATCPFRLEKIENPYQFKEEISGEWKGLTAGGCPNYPATYPNNPRYQVTLDSRQSMDNTLLVFLKGPKQYSLGVKISCVRLDDETATAPFKTKDSGAYRSGFVAVEMDNLPSGTYEIMPSTFSPQQEGPFFLELKSSCSITISRIR
************************KAVLLTTSKINNLNFVPFMNVDLAEKFQYAVPFTDKEGPLILSPKQKRDFVAWVRPSEFCSEPKMVAGEFVDYFSIKQTIVSDCSFVASLAVSALYERRFGKRLVTSIIYPRNRNKEPVYNPFGKYMVKLHLNGITRKVIIDDQLPMARFNQLLCSYSQNKNELWVSILEKAYMKVMGGYDFPGSNSPGIRRSFTTVDCLRIEFNPRLTWVLE****************SEKCHFLLSQALDADEAGLKDTAVQLYMQSI**************************EKAVLLTTSKINNLNFVPFMNVDLAEKFQYAVPFTDKEGPLILSPKQKRDFVAWVRPSEFCSEPKMVAGEFVDYFSIKQTIVSDCSFVASLAVSALYERRFGKRLVTSIIYPRNRNKEPVYNPFGKYMVKLHLNGITRKVIIDDQLPMARFNQLLCSYSQNKNELWVSILEKAYMKVMGGYDFPGSNSTLHALNGLDTGAARAIRPNDARILTQTSVFENLFTRLHSRAMFWLPWCKREICLRMK*************VSWSQGLRLLQLKNPWSNVRWRGNYSELDRLHWTPELKRALNFDPNSASMFDNGIFWIDYESILRFYDVFYMNWNPGLFSHTFCVHQELTFEKKNGNSTNCVKTAKQLSIVVFDYVTFKPVIIRNSSLDYFGQWPPST**ASPKRNFWILLTRHITQLEDFKQNREYITVLVYKNEGKRVYYPYDPPPYLDGVRINSPHYLCKIILNENSSRKYTLVVSQYEKMHTIYYTLRAYATCPFRLEKIENPYQFKEEVRIEIWSTYDLMFMFTSENAWRM*******PYLDGVRINSPHYLCKIILNENSSRKYTLVVSQYEKMHTIYYTLRAYATCPFRLEKIENPYQFKEEISGEWKGLTAGGCPNYPATYPNNPRYQVTLDSRQSMDNTLLVFLKGPKQYSLGVKISCVRLDDETATAPFKTKDSGAYRSGFVAVEMDNL***TY**************FFLEL************
***************************LLTTSKINNLNFVPFMNVDLAEKFQYAVPFTDKEGPLI**********AWVRPSEFCSEPKMVAGEFVDYFSIKQTIVSDCSFVASLAVSALYERRFGKRLVTSIIYPRNRNKEPVYNPFGKYMVKLHLNGITRKVIIDDQLPMARFNQLLCSYSQNKNELWVSILEKAYMKVMGGYDFPGSNSPGIRRSFTTVDCLRIEFNPRLTWVLERNEPKNEQVKSRDELLSEKCHFLLSQALDADEAGLKDTAVQLYMQSIEMTKPTLHRGSSQHLKVSGRDTYTEEEKAVLLTTSKINNLNFVPFMNVDLAEKFQYAVPFTDKEGPLIL*PKQK***VAWVRPSEFCSEPKMVAGEFVDYFSIKQTIVSDCSFVASLAVSALYERRFGKRLVTSIIYPRNRNKEPVYNPFGKYMVKLHLNGITRKVIIDDQLPMARFNQLLCSYSQNKNELWVSILEKAYMKVMGGYDFPGSNSTLHALNGLDTGAARAIRPNDARILTQTSVFENLFTRLHSRAMFWL***************RSRVDTMQSSVSWSQGLRLLQLKNPWSNVRWRGNY****************************GIFWIDYESILRFYDVFYMNWNPGLFSHTFCVHQELTFEKKNGNSTNCVKTAKQLSIVVFDYVTFKPVIIRNSSLDYFGQ*********PKRNFWILL***************YITVLVYKNEGKRVYYPYDPPPYLDGVRINSPHYLCKIILNENSSRKYTLVVSQYEKMHTIYYTLRAYATCPFRLEKIENPYQFKEEVR***WSTYDLMFMFTSENAWRMRPSNDPPPYLDGVRINSPHYLCKIILNENSSRKYTLVVSQYEKMHTIYYTLRAYATCPFRLEKIENPYQFKEEISGEWKGLTAGGCPNYPATYPNNPRYQVTLDSRQSMDNTLLVFLKGPKQYSLGVKISCVRLD***********DSGAYRSGFVAVEMDNLPSGTYEIMPSTFSPQQEGPFFLELKSSCSITISRI*
********************TEEEKAVLLTTSKINNLNFVPFMNVDLAEKFQYAVPFTDKEGPLILSPKQKRDFVAWVRPSEFCSEPKMVAGEFVDYFSIKQTIVSDCSFVASLAVSALYERRFGKRLVTSIIYPRNRNKEPVYNPFGKYMVKLHLNGITRKVIIDDQLPMARFNQLLCSYSQNKNELWVSILEKAYMKVMGGYDFPGSNSPGIRRSFTTVDCLRIEFNPRLTWVLERNE**********ELLSEKCHFLLSQALDADEAGLKDTAVQLYMQSIEMTKP******************TEEEKAVLLTTSKINNLNFVPFMNVDLAEKFQYAVPFTDKEGPLILSPKQKRDFVAWVRPSEFCSEPKMVAGEFVDYFSIKQTIVSDCSFVASLAVSALYERRFGKRLVTSIIYPRNRNKEPVYNPFGKYMVKLHLNGITRKVIIDDQLPMARFNQLLCSYSQNKNELWVSILEKAYMKVMGGYDFPGSNSTLHALNGLDTGAARAIRPNDARILTQTSVFENLFTRLHSRAMFWLPWCKREICLRMKK**************WSQGLRLLQLKNPWSNVRWRGNYSELDRLHWTPELKRALNFDPNSASMFDNGIFWIDYESILRFYDVFYMNWNPGLFSHTFCVHQELTFEKKNGNSTNCVKTAKQLSIVVFDYVTFKPVIIRNSSLDYFGQWPPSTPAASPKRNFWILLTRHITQLEDFKQNREYITVLVYKNEGKRVYYPYDPPPYLDGVRINSPHYLCKIILNENSSRKYTLVVSQYEKMHTIYYTLRAYATCPFRLEKIENPYQFKEEVRIEIWSTYDLMFMFTSENAWRMRPSNDPPPYLDGVRINSPHYLCKIILNENSSRKYTLVVSQYEKMHTIYYTLRAYATCPFRLEKIENPYQFKEEISGEWKGLTAGGCPNYPATYPNNPRYQVTLDSRQSMDNTLLVFLKGPKQYSLGVKISCVRLDDETATAPFKTKDSGAYRSGFVAVEMDNLPSGTYEIMPSTFSPQQEGPFFLELKSSCSITISRIR
*******************YTEEEKAVLLTTSKINNLNFVPFMNVDLAEKFQYAVPFTDKEGPLILSPKQKRDFVAWVRPSEFCSEPKMVAGEFVDYFSIKQTIVSDCSFVASLAVSALYERRFGKRLVTSIIYPRNRNKEPVYNPFGKYMVKLHLNGITRKVIIDDQLPMARFNQLLCSYSQNKNELWVSILEKAYMKVMGGYDFPGSNSPGIRRSFTTVDCLRIEFNPRLTWVLERNEPKNEQVKSRDELLSEKCHFLLSQALDADEAGLKDTAVQLYMQSIEMTKPTLHRGSSQHLKVSGRDTYTEEEKAVLLTTSKINNLNFVPFMNVDLAEKFQYAVPFTDKEGPLILSPKQKRDFVAWVRPSEFCSEPKMVAGEFVDYFSIKQTIVSDCSFVASLAVSALYERRFGKRLVTSIIYPRNRNKEPVYNPFGKYMVKLHLNGITRKVIIDDQLPMARFNQLLCSYSQNKNELWVSILEKAYMKVMGGYDFPGSNSTLHALNGLDTGAARAIRPNDARILTQTSVFENLFTRLHSRAMFWLPWCKREICLRMKKRERSRVDTMQSSVSWSQGLRLLQLKNPWSNVRWRGNYSELDRLHWTPELKRALNFDPNSASMFDNGIFWIDYESILRFYDVFYMNWNPGLFSHTFCVHQELTFEKKNGNSTNCVKTAKQLSIVVFDYVTFKPVIIRNSSLDYFGQWPPSTPAASPKRNFWILLTRHITQLEDFKQNREYITVLVYKNEGKRVYYPYDPPPYLDGVRINSPHYLCKIILNENSSRKYTLVVSQYEKMHTIYYTLRAYATCPFRLEKIENPYQFKEEVRIEIWSTYDLMFMFTSENAWRMRPSNDPPPYLDGVRINSPHYLCKIILNENSSRKYTLVVSQYEKMHTIYYTLRAYATCPFRLEKIENPYQFKEEISGEWKGLTAGGCPNYPATYPNNPRYQVTLDSRQSMDNTLLVFLKGPKQYSLGVKISCVRLDDETATAPFKTKDSGAYRSGFVAVEMDNLPSGTYEIMPSTFSPQQEGPFFLELKSSCSITI****
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhooooooooooooooooooooooooo
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
KPTLHRGSSQHLKVSGRDTYTEEEKAVLLTTSKINNLNFVPFMNVDLAEKFQYAVPFTDKEGPLILSPKQKRDFVAWVRPSEFCSEPKMVAGEFVDYFSIKQTIVSDCSFVASLAVSALYERRFGKRLVTSIIYPRNRNKEPVYNPFGKYMVKLHLNGITRKVIIDDQLPMARFNQLLCSYSQNKNELWVSILEKAYMKVMGGYDFPGSNSPGIRRSFTTVDCLRIEFNPRLTWVLERNEPKNEQVKSRDELLSEKCHFLLSQALDADEAGLKDTAVQLYMQSIEMTKPTLHRGSSQHLKVSGRDTYTEEEKAVLLTTSKINNLNFVPFMNVDLAEKFQYAVPFTDKEGPLILSPKQKRDFVAWVRPSEFCSEPKMVAGEFVDYFSIKQTIVSDCSFVASLAVSALYERRFGKRLVTSIIYPRNRNKEPVYNPFGKYMVKLHLNGITRKVIIDDQLPMARFNQLLCSYSQNKNELWVSILEKAYMKVMGGYDFPGSNSTLHALNGLDTGAARAIRPNDARILTQTSVFENLFTRLHSRAMFWLPWCKREICLRMKKRERSRVDTMQSSVSWSQGLRLLQLKNPWSNVRWRGNYSELDRLHWTPELKRALNFDPNSASMFDNGIFWIDYESILRFYDVFYMNWNPGLFSHTFCVHQELTFEKKNGNSTNCVKTAKQLSIVVFDYVTFKPVIIRNSSLDYFGQWPPSTPAASPKRNFWILLTRHITQLEDFKQNREYITVLVYKNEGKRVYYPYDPPPYLDGVRINSPHYLCKIILNENSSRKYTLVVSQYEKMHTIYYTLRAYATCPFRLEKIENPYQFKEEVRIEIWSTYDLMFMFTSENAWRMRPSNDPPPYLDGVRINSPHYLCKIILNENSSRKYTLVVSQYEKMHTIYYTLRAYATCPFRLEKIENPYQFKEEISGEWKGLTAGGCPNYPATYPNNPRYQVTLDSRQSMDNTLLVFLKGPKQYSLGVKISCVRLDDETATAPFKTKDSGAYRSGFVAVEMDNLPSGTYEIMPSTFSPQQEGPFFLELKSSCSITISRIR
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query1043 2.2.26 [Sep-21-2011]
Q9Y6W3813 Calpain-7 OS=Homo sapiens yes N/A 0.520 0.667 0.475 1e-144
Q9R1S8813 Calpain-7 OS=Mus musculus yes N/A 0.474 0.608 0.504 1e-143
A0FKG7813 Calpain-7 OS=Sus scrofa G yes N/A 0.464 0.595 0.506 1e-142
Q9Y6Z8854 Calpain-like protease pal yes N/A 0.479 0.585 0.279 2e-41
Q00204847 Calpain-like protease pal yes N/A 0.423 0.521 0.277 1e-35
Q7RZP7 986 Calpain-like protease pal N/A N/A 0.296 0.313 0.328 2e-33
O08688640 Calpain-5 OS=Mus musculus no N/A 0.247 0.403 0.271 1e-17
P273981594 Calpain-D OS=Drosophila m no N/A 0.260 0.170 0.292 4e-17
Q8R4C0640 Calpain-5 OS=Rattus norve no N/A 0.247 0.403 0.274 6e-17
O15484640 Calpain-5 OS=Homo sapiens no N/A 0.249 0.406 0.256 1e-15
>sp|Q9Y6W3|CAN7_HUMAN Calpain-7 OS=Homo sapiens GN=CAPN7 PE=1 SV=1 Back     alignment and function desciption
 Score =  513 bits (1321), Expect = e-144,   Method: Compositional matrix adjust.
 Identities = 285/600 (47%), Positives = 366/600 (61%), Gaps = 57/600 (9%)

Query: 247 KSRDELLSEKCHFLLSQALDADEA----------GLKDTAVQLYMQSIEM-----TKPTL 291
           ++ D++L  K   L  QALD  EA           +  T+V+     +         P L
Sbjct: 126 ETADKVLQNKLKQLARQALDRAEALSEPLTKPVGKISSTSVKPKPPPVRAHFPLGANPFL 185

Query: 292 HRGSS----QHLKVSGRDTYTEEEKAVLLTTSKINNLNFVPFMNVDLAEKFQYAVPFTDK 347
            R  S    Q     G+  YT EE  VL TTSKIN + +VPFMNVDL E+F Y +PF D+
Sbjct: 186 ERPQSFISPQSCDAQGQ-RYTAEEIEVLRTTSKINGIEYVPFMNVDLRERFAYPMPFCDR 244

Query: 348 EGPLILSPKQKRDFVAWVRPSEFCSEPKMVAGEFVDYFSIKQTIVSDCSFVASLAVSALY 407
            G L LSPKQK  F  WVRP +  + P M+    V  FSIKQTIVSDCSFVASLA+SA Y
Sbjct: 245 WGKLPLSPKQKTTFSKWVRPEDLTNNPTMIYT--VSSFSIKQTIVSDCSFVASLAISAAY 302

Query: 408 ERRFGKRLVTSIIYPRNRNKEPVYNPFGKYMVKLHLNGITRKVIIDDQLPMARFNQLLCS 467
           ERRF K+L+T IIYP+N++ EP YNP GKYMVKLHLNG+ RKVIIDDQLP+    +LLCS
Sbjct: 303 ERRFNKKLITGIIYPQNKDGEPEYNPCGKYMVKLHLNGVPRKVIIDDQLPVDHKGELLCS 362

Query: 468 YSQNKNELWVSILEKAYMKVMGGYDFPGSNST--LHALNGLDTGAARAIRPNDARILTQT 525
           YS NK+ELWVS++EKAYMKVMGGYDFPGSNS   LHAL G      R    +D++  ++ 
Sbjct: 363 YSNNKSELWVSLIEKAYMKVMGGYDFPGSNSNIDLHALTGWI--PERIAMHSDSQTFSKD 420

Query: 526 SVFENLFTRLHSRAMFWLPWCKREICLRMKKRERSRVDTMQSSV---SWSQGLRLLQLKN 582
           + F  L+ R H   +  L      +    +  +   V T   +V      +GLR +QLKN
Sbjct: 421 NSFRMLYQRFHKGDV--LITASTGMMTEAEGEKWGLVPTHAYAVLDIREFKGLRFIQLKN 478

Query: 583 PWSNVRWRGNYSELDRLHWTPELKRALNFDPNSASMFDNGIFWIDYESILRFYDVFYMNW 642
           PWS++RW+G YSE D  +WTPEL++ LNFDP +A   DNGIFWI ++ + ++YDV Y++W
Sbjct: 479 PWSHLRWKGRYSENDVKNWTPELQKYLNFDPRTAQKIDNGIFWISWDDLCQYYDVIYLSW 538

Query: 643 NPGLFSHTFCVHQELTFEKKNGNSTNCVKTAKQLSIVVFDYVTFKPVIIRNSSLDYFGQW 702
           NPGLF  + C+H   T++ K G     VK A  L+               N       Q 
Sbjct: 539 NPGLFKESTCIHS--TWDAKQGP----VKDAYSLA--------------NNPQYKLEVQC 578

Query: 703 PPSTPAASPKRNFWILLTRHITQLEDFKQNREYITVLVYKNEGKRVYYPYDPPPYLDGVR 762
           P    A       W+LL+RHIT  +DF  NRE+IT++VYK +GK+VYYP DPPPY+DG+R
Sbjct: 579 PQGGAAV------WVLLSRHITDKDDFANNREFITMVVYKTDGKKVYYPADPPPYIDGIR 632

Query: 763 INSPHYLCKIILNENSSRKYTLVVSQYEKMHTIYYTLRAYATCPFRLEKIENPYQFKEEV 822
           INSPHYL KI L    +  +TLVVSQYEK +TI+YT+R Y+ C F   KI +PY   + +
Sbjct: 633 INSPHYLTKIKLTTPGTHTFTLVVSQYEKQNTIHYTVRVYSACSFTFSKIPSPYTLSKRI 692
Calcium-regulated non-lysosomal thiol-protease.
Homo sapiens (taxid: 9606)
EC: 3EC: .EC: 4EC: .EC: 2EC: 2EC: .EC: -
>sp|Q9R1S8|CAN7_MOUSE Calpain-7 OS=Mus musculus GN=Capn7 PE=2 SV=1 Back     alignment and function description
>sp|A0FKG7|CAN7_PIG Calpain-7 OS=Sus scrofa GN=CAPN7 PE=2 SV=1 Back     alignment and function description
>sp|Q9Y6Z8|PALB_ASPOR Calpain-like protease palB/RIM13 OS=Aspergillus oryzae (strain ATCC 42149 / RIB 40) GN=palB PE=3 SV=1 Back     alignment and function description
>sp|Q00204|PALB_EMENI Calpain-like protease palB OS=Emericella nidulans (strain FGSC A4 / ATCC 38163 / CBS 112.46 / NRRL 194 / M139) GN=palB PE=3 SV=2 Back     alignment and function description
>sp|Q7RZP7|PALB_NEUCR Calpain-like protease palB/rim-13 OS=Neurospora crassa (strain ATCC 24698 / 74-OR23-1A / CBS 708.71 / DSM 1257 / FGSC 987) GN=rim-13 PE=3 SV=2 Back     alignment and function description
>sp|O08688|CAN5_MOUSE Calpain-5 OS=Mus musculus GN=Capn5 PE=2 SV=1 Back     alignment and function description
>sp|P27398|CAND_DROME Calpain-D OS=Drosophila melanogaster GN=sol PE=1 SV=2 Back     alignment and function description
>sp|Q8R4C0|CAN5_RAT Calpain-5 OS=Rattus norvegicus GN=Capn5 PE=1 SV=1 Back     alignment and function description
>sp|O15484|CAN5_HUMAN Calpain-5 OS=Homo sapiens GN=CAPN5 PE=1 SV=2 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query1043
3838551971011 PREDICTED: calpain-7-like [Megachile rot 0.554 0.571 0.517 0.0
307205385824 Calpain-7 [Harpegnathos saltator] 0.475 0.601 0.587 0.0
322795542821 hypothetical protein SINV_09328 [Solenop 0.562 0.714 0.517 0.0
332025787826 Calpain-7 [Acromyrmex echinatior] 0.561 0.709 0.515 0.0
345481832821 PREDICTED: calpain-7-like isoform 2 [Nas 0.564 0.717 0.507 1e-180
307176575826 Calpain-7 [Camponotus floridanus] 0.562 0.710 0.513 1e-179
345481834814 PREDICTED: calpain-7-like isoform 1 [Nas 0.561 0.719 0.508 1e-179
380019253826 PREDICTED: LOW QUALITY PROTEIN: calpain- 0.475 0.600 0.581 1e-178
328790403826 PREDICTED: calpain-7 [Apis mellifera] 0.498 0.629 0.559 1e-178
350417948826 PREDICTED: calpain-7-like [Bombus impati 0.562 0.710 0.505 1e-176
>gi|383855197|ref|XP_003703103.1| PREDICTED: calpain-7-like [Megachile rotundata] Back     alignment and taxonomy information
 Score =  647 bits (1668), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 339/655 (51%), Positives = 432/655 (65%), Gaps = 77/655 (11%)

Query: 283 SIEMTKPTLHRGSSQHLKVSGRDT-YTEEEKAVLLTTSKINNLNFVPFMNVDLAEKFQYA 341
           S + T+P LHRGSS HLKVSG +T YTEEEK VLL +S IN+  FVPFMN+DL EKFQYA
Sbjct: 373 SGKQTRPPLHRGSSAHLKVSGGNTSYTEEEKRVLLHSSHINDHEFVPFMNIDLTEKFQYA 432

Query: 342 VPFTDKEGPLILSPKQKRDFVAWVRPSEFCSEPKMVAGEFVDYFSIKQTIVSDCSFVASL 401
           +PFTDK+G L L+PKQK DF  W RP E   +PKM+    VDY+SIKQT+VSDCSFVASL
Sbjct: 433 IPFTDKDGLLELAPKQKPDFAKWCRPEELFPDPKMLKTSHVDYYSIKQTVVSDCSFVASL 492

Query: 402 AVSALYERRFGKRLVTSIIYPRNRNKEPVYNPFGKYMVKLHLNGITRKVIIDDQLPMARF 461
           AVSA YE+RFG+RL+TSIIYP+NRNKEP+YNPFGKYMVKLHLNG+ RKVIIDD LP++R+
Sbjct: 493 AVSAQYEKRFGRRLITSIIYPKNRNKEPIYNPFGKYMVKLHLNGVPRKVIIDDLLPVSRY 552

Query: 462 NQLLCSYSQNKNELWVSILEKAYMKVMGGYDFPGSNST--LHALNGLDTGAARAIRPNDA 519
           NQLLCSYS N  ELW+S+LEKAYMKVMGGYDFPGSNS   LHAL G       AIRP + 
Sbjct: 553 NQLLCSYSSNHGELWISLLEKAYMKVMGGYDFPGSNSNIDLHALTGW-IPERWAIRPGEP 611

Query: 520 RILTQTSVFENLFTRLHSRAMFWLPWCKREICLRMKKRERSRVDTMQS-----------S 568
               + ++F  L +RLH          K ++ + +   E S +D  ++           +
Sbjct: 612 D-FNKDNLFNVLLSRLH----------KGDVLVTVATGELSDLDADRTGLVPTHAYAVLN 660

Query: 569 VSWSQGLRLLQLKNPWSNVRWRGNYSELDRLHWTPELKRALNFDPNSASMFDNGIFWIDY 628
           V    G RLLQLKNPWS++RW+GNYSELD +HWT ELK ALN+DP+SAS FDNG+FWIDY
Sbjct: 661 VKQINGDRLLQLKNPWSHLRWKGNYSELDTIHWTNELKEALNYDPDSASQFDNGVFWIDY 720

Query: 629 ESILRFYDVFYMNWNPGLFSHTFCVHQELTFEKKNGNSTNCVKTAKQLSIVVFDYVTFKP 688
           +SI RF+DVFY+NWNPGLF++T+C+HQ              +    Q ++ V + VT   
Sbjct: 721 DSICRFFDVFYLNWNPGLFNYTYCIHQMWNAGIGPVKDAYNIGDNPQFNLEVQNNVTGA- 779

Query: 689 VIIRNSSLDYFGQWPPSTPAASPKRNFWILLTRHITQLEDFKQNREYITVLVYKNEGKRV 748
                                      WILLTRHIT + DF+QN+EYIT+LVY+N G+RV
Sbjct: 780 --------------------------IWILLTRHITDIADFRQNQEYITILVYRNNGRRV 813

Query: 749 YYPYDPPPYLDGVRINSPHYLCKIILNENSSRKYTLVVSQYEKMHTIYYTLRAYATCPFR 808
           YYP+DPPPY+DG+RINSPHYLCKI L+ NS  +YTLV+SQYEK +TIYYTLRAY TCPF 
Sbjct: 814 YYPHDPPPYIDGLRINSPHYLCKIKLDTNSDSRYTLVISQYEKTNTIYYTLRAYGTCPFT 873

Query: 809 LEKIENPYQFKEEVRIEIWSTYDLMFMFTSENAWRMRPSNDPPPYLDGVRINSPHYLCKI 868
           L K+   Y++++E+    W           + A     SN P         N+P Y  ++
Sbjct: 874 LRKMPQLYKYEKEITDGQW-----------KGALAGGCSNHP------TYQNNPRY--QL 914

Query: 869 ILNENSSRKYTLVVSQYEKMHTIYYTLRAYATCPFRLEKIENPYQFKEEISGEWK 923
           +L  +++  Y L++ +  K + I + + +       L   + P  FK + SG ++
Sbjct: 915 VLENSNNNNYLLIILKGPKQYQIGFDIVSVV-----LNDPDAPGAFKMKSSGPFR 964

Source: Megachile rotundata

Species: Megachile rotundata

Genus: Megachile

Family: Megachilidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota
>gi|307205385|gb|EFN83726.1| Calpain-7 [Harpegnathos saltator] Back     alignment and taxonomy information
>gi|322795542|gb|EFZ18238.1| hypothetical protein SINV_09328 [Solenopsis invicta] Back     alignment and taxonomy information
>gi|332025787|gb|EGI65944.1| Calpain-7 [Acromyrmex echinatior] Back     alignment and taxonomy information
>gi|345481832|ref|XP_003424466.1| PREDICTED: calpain-7-like isoform 2 [Nasonia vitripennis] Back     alignment and taxonomy information
>gi|307176575|gb|EFN66062.1| Calpain-7 [Camponotus floridanus] Back     alignment and taxonomy information
>gi|345481834|ref|XP_001605193.2| PREDICTED: calpain-7-like isoform 1 [Nasonia vitripennis] Back     alignment and taxonomy information
>gi|380019253|ref|XP_003693525.1| PREDICTED: LOW QUALITY PROTEIN: calpain-7-like [Apis florea] Back     alignment and taxonomy information
>gi|328790403|ref|XP_001121978.2| PREDICTED: calpain-7 [Apis mellifera] Back     alignment and taxonomy information
>gi|350417948|ref|XP_003491659.1| PREDICTED: calpain-7-like [Bombus impatiens] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query1043
MGI|MGI:1338030813 Capn7 "calpain 7" [Mus musculu 0.346 0.444 0.530 1.2e-159
UNIPROTKB|Q9Y6W3813 CAPN7 "Calpain-7" [Homo sapien 0.346 0.444 0.533 1.1e-158
UNIPROTKB|E1BY84814 CAPN7 "Uncharacterized protein 0.335 0.429 0.541 1.8e-158
UNIPROTKB|A0FKG7813 CAPN7 "Calpain-7" [Sus scrofa 0.346 0.444 0.525 6.8e-157
ZFIN|ZDB-GENE-111111-1815 capn7 "calpain 7" [Danio rerio 0.335 0.429 0.526 9.9e-156
UNIPROTKB|E1BIX3813 CAPN7 "Uncharacterized protein 0.441 0.565 0.460 2.8e-152
UNIPROTKB|E2R0F7813 CAPN7 "Uncharacterized protein 0.441 0.565 0.458 9.3e-152
UNIPROTKB|I3LBF0813 CAPN7 "Calpain-7" [Sus scrofa 0.441 0.565 0.458 2.2e-150
RGD|1304855813 Capn7 "calpain 7" [Rattus norv 0.440 0.564 0.457 2.2e-150
UNIPROTKB|E9PU30813 Capn7 "Protein Capn7" [Rattus 0.440 0.564 0.455 2e-149
MGI|MGI:1338030 Capn7 "calpain 7" [Mus musculus (taxid:10090)] Back     alignment and assigned GO terms
 Score = 985 (351.8 bits), Expect = 1.2e-159, Sum P(3) = 1.2e-159
 Identities = 199/375 (53%), Positives = 253/375 (67%)

Query:   295 SSQHLKVSGRDTYTEEEKAVLLTTSKINNLNFVPFMNVDLAEKFQYAVPFTDKEGPLILS 354
             S Q     G+  YT EE  VL TTSKIN + +VPFM+VDL E+F Y +PF D+ G L LS
Sbjct:   193 SPQSCDAQGQK-YTAEEIEVLRTTSKINGVEYVPFMSVDLRERFAYPMPFCDRLGKLPLS 251

Query:   355 PKQKRDFVAWVRPSEFCSEPKMVAGEFVDYFSIKQTIVSDCSFVASLAVSALYERRFGKR 414
             PKQK  F  WVRP +  + P M+    V  FSIKQTIVSDCSFVASLA+SA YERRF K+
Sbjct:   252 PKQKTTFSKWVRPEDLTNNPTMIYT--VSSFSIKQTIVSDCSFVASLAISAAYERRFNKK 309

Query:   415 LVTSIIYPRNRNKEPVYNPFGKYMVKLHLNGITRKVIIDDQLPMARFNQLLCSYSQNKNE 474
             L+TSIIYP+N++ EP YNP GKYMVKLHLNG+ RKVIIDDQLP+    +LLCSYS NK+E
Sbjct:   310 LITSIIYPQNKDGEPEYNPCGKYMVKLHLNGVPRKVIIDDQLPVDHKGELLCSYSNNKSE 369

Query:   475 LWVSILEKAYMKVMGGYDFPGSNST--LHALNGLDTGAARAIRPNDARILTQTSVFENLF 532
             LWVS++EKAYMKVMGGYDFPGSNS   LHAL G      R    +D++  ++ + F  L+
Sbjct:   370 LWVSLIEKAYMKVMGGYDFPGSNSNIDLHALTGWIP--ERIAMHSDSQTFSKDNSFRMLY 427

Query:   533 TRLHSRAMFWLPWCKREICLRMKKRERSRVDTMQSSV---SWSQGLRLLQLKNPWSNVRW 589
              R H   +  L      +    +  +   V T   +V      +GLR +QLKNPWS++RW
Sbjct:   428 QRFHKGDV--LITASTGVMTEAEGEKWGLVPTHAYAVLDIREFKGLRFIQLKNPWSHLRW 485

Query:   590 RGNYSELDRLHWTPELKRALNFDPNSASMFDNGIFWIDYESILRFYDVFYMNWNPGLFSH 649
             +G YSE D  +WTPEL++ LNFDP +A   DNGIFWI ++ + ++YDV Y++WNP LF  
Sbjct:   486 KGRYSENDVKNWTPELQKYLNFDPRTAQKIDNGIFWISWDDLCQYYDVVYLSWNPALFKE 545

Query:   650 TFCVHQELTFEKKNG 664
             + C+H   T++ K G
Sbjct:   546 STCIHS--TWDAKQG 558
GO:0004198 "calcium-dependent cysteine-type endopeptidase activity" evidence=IEA
GO:0005622 "intracellular" evidence=IEA
GO:0005634 "nucleus" evidence=IEA
GO:0006508 "proteolysis" evidence=IEA
GO:0008233 "peptidase activity" evidence=IEA
GO:0008234 "cysteine-type peptidase activity" evidence=IEA
GO:0016787 "hydrolase activity" evidence=IEA
GO:0090541 "MIT domain binding" evidence=ISO
GO:0097264 "self proteolysis" evidence=ISO
UNIPROTKB|Q9Y6W3 CAPN7 "Calpain-7" [Homo sapiens (taxid:9606)] Back     alignment and assigned GO terms
UNIPROTKB|E1BY84 CAPN7 "Uncharacterized protein" [Gallus gallus (taxid:9031)] Back     alignment and assigned GO terms
UNIPROTKB|A0FKG7 CAPN7 "Calpain-7" [Sus scrofa (taxid:9823)] Back     alignment and assigned GO terms
ZFIN|ZDB-GENE-111111-1 capn7 "calpain 7" [Danio rerio (taxid:7955)] Back     alignment and assigned GO terms
UNIPROTKB|E1BIX3 CAPN7 "Uncharacterized protein" [Bos taurus (taxid:9913)] Back     alignment and assigned GO terms
UNIPROTKB|E2R0F7 CAPN7 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)] Back     alignment and assigned GO terms
UNIPROTKB|I3LBF0 CAPN7 "Calpain-7" [Sus scrofa (taxid:9823)] Back     alignment and assigned GO terms
RGD|1304855 Capn7 "calpain 7" [Rattus norvegicus (taxid:10116)] Back     alignment and assigned GO terms
UNIPROTKB|E9PU30 Capn7 "Protein Capn7" [Rattus norvegicus (taxid:10116)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

ID ?Name ?Annotated EC number ?Identity ?Query coverage ?Hit coverage ?RBH(Q2H) ?RBH(H2Q) ?
A0FKG7CAN7_PIG3, ., 4, ., 2, 2, ., -0.50670.46400.5953yesN/A
Q9R1S8CAN7_MOUSE3, ., 4, ., 2, 2, ., -0.50460.47450.6088yesN/A

EC Number Prediction by EFICAz Software ?

Prediction LevelEC numberConfidence of Prediction
3rd Layer3.4.22LOW CONFIDENCE prediction!

Prediction of Functionally Associated Proteins

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query1043
smart00230318 smart00230, CysPc, Calpain-like thiol protease fam 2e-58
cd00044315 cd00044, CysPc, Calpains, domains IIa, IIb; calciu 1e-54
smart00230318 smart00230, CysPc, Calpain-like thiol protease fam 7e-40
cd00044315 cd00044, CysPc, Calpains, domains IIa, IIb; calciu 9e-38
pfam00648302 pfam00648, Peptidase_C2, Calpain family cysteine p 3e-23
smart00720143 smart00720, calpain_III, calpain_III domain 2e-21
pfam01067142 pfam01067, Calpain_III, Calpain large subunit, dom 2e-20
cd00214150 cd00214, Calpain_III, Calpain, subdomain III 9e-18
pfam00648302 pfam00648, Peptidase_C2, Calpain family cysteine p 3e-14
cd0268075 cd02680, MIT_calpain7_2, MIT: domain contained wit 4e-05
pfam0421269 pfam04212, MIT, MIT (microtubule interacting and t 0.004
>gnl|CDD|128526 smart00230, CysPc, Calpain-like thiol protease family Back     alignment and domain information 
 Score =  203 bits (519), Expect = 2e-58
 Identities = 85/344 (24%), Positives = 131/344 (38%), Gaps = 52/344 (15%)

Query: 326 FVPFMNVDLAEKFQYAVP-FTDKEGPLILSPKQKRDFVAWVRPSEFCSEPKMVAGEFVDY 384
           +             +  P F    G L  S +Q R FV W RP E    P  + G     
Sbjct: 1   YEALRQYCKESGTLFEDPLFPANNGSLFFSQRQ-RKFVVWKRPHEIFENPPFIVGG-ASR 58

Query: 385 FSIKQTIVSDCSFVASLAVSALYERRFGKRLVTSIIYPRNRNKEPVYNPFGKYMVKLHLN 444
             I Q ++ DC  +A+LA   L E+      +   + P ++      N  G +  +    
Sbjct: 59  TDICQGVLGDCWLLAALASLTLREK------LLDRVIPHDQEFSE--NYAGIFHFRFWRF 110

Query: 445 GITRKVIIDDQLPMARFNQLLCSYSQNKNELWVSILEKAYMKVMGGYDFPGSNSTLHALN 504
           G    V+IDD+LP     +L+  +S ++NE W ++LEKAY K+ G Y+     ST  AL 
Sbjct: 111 GKWVDVVIDDRLPTYN-GELVFMHSNSRNEFWSALLEKAYAKLNGCYEALKGGSTTEALE 169

Query: 505 GLDTGAARAIRPNDARILTQTSVFENLFTRLHSRAMFWLPWCKREICLRMKKRERSRVDT 564
            L  G A +I   +A      ++FE+LF      ++         +   +          
Sbjct: 170 DLTGGVAESIDLKEASK-DPDNLFEDLFKAFERGSL---------MGCSIGAGT---AVE 216

Query: 565 MQSSVSWS-----------------QGLRLLQLKNPWSNVRWRGNYSELDRLHWT---PE 604
            +                       +   LL+L+NPW  V W G +S+     W      
Sbjct: 217 EEEQKDCGLVKGHAYSVTDVREVQGRRQELLRLRNPWGQVEWNGPWSDDSPE-WRSVSAS 275

Query: 605 LKRALNFDPNSASMFDNGIFWIDYESILR-FYDVFYMNWNPGLF 647
            K+ L    +     D+G FW+ +E  LR F  V   N NP   
Sbjct: 276 EKKNLGLTFD-----DDGEFWMSFEDFLRHFDKVEICNLNPDSL 314

Calpain-like thiol protease family (peptidase family C2). Calcium activated neutral protease (large subunit). Length = 318
>gnl|CDD|238004 cd00044, CysPc, Calpains, domains IIa, IIb; calcium-dependent cytoplasmic cysteine proteinases, papain-like Back     alignment and domain information
>gnl|CDD|128526 smart00230, CysPc, Calpain-like thiol protease family Back     alignment and domain information
>gnl|CDD|238004 cd00044, CysPc, Calpains, domains IIa, IIb; calcium-dependent cytoplasmic cysteine proteinases, papain-like Back     alignment and domain information
>gnl|CDD|216041 pfam00648, Peptidase_C2, Calpain family cysteine protease Back     alignment and domain information
>gnl|CDD|214786 smart00720, calpain_III, calpain_III domain Back     alignment and domain information
>gnl|CDD|216279 pfam01067, Calpain_III, Calpain large subunit, domain III Back     alignment and domain information
>gnl|CDD|238132 cd00214, Calpain_III, Calpain, subdomain III Back     alignment and domain information
>gnl|CDD|216041 pfam00648, Peptidase_C2, Calpain family cysteine protease Back     alignment and domain information
>gnl|CDD|239143 cd02680, MIT_calpain7_2, MIT: domain contained within Microtubule Interacting and Trafficking molecules Back     alignment and domain information
>gnl|CDD|146707 pfam04212, MIT, MIT (microtubule interacting and transport) domain Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 1043
KOG0045|consensus612 100.0
smart00230318 CysPc Calpain-like thiol protease family. Calpain- 100.0
cd00044315 CysPc Calpains, domains IIa, IIb; calcium-dependen 100.0
PF00648298 Peptidase_C2: Calpain family cysteine protease Thi 100.0
smart00230318 CysPc Calpain-like thiol protease family. Calpain- 100.0
cd00044315 CysPc Calpains, domains IIa, IIb; calcium-dependen 100.0
PF00648298 Peptidase_C2: Calpain family cysteine protease Thi 100.0
KOG0045|consensus612 99.98
smart00720143 calpain_III calpain_III. 99.92
cd00214150 Calpain_III Calpain, subdomain III. Calpains are c 99.91
PF01067147 Calpain_III: Calpain large subunit, domain III; In 99.88
cd00214150 Calpain_III Calpain, subdomain III. Calpains are c 99.73
smart00720143 calpain_III calpain_III. 99.7
PF01067147 Calpain_III: Calpain large subunit, domain III; In 99.63
cd0268075 MIT_calpain7_2 MIT: domain contained within Microt 96.53
cd0268475 MIT_2 MIT: domain contained within Microtubule Int 92.57
cd0267875 MIT_VPS4 MIT: domain contained within Microtubule 91.24
PF0421269 MIT: MIT (microtubule interacting and transport) d 89.58
cd0265675 MIT MIT: domain contained within Microtubule Inter 89.57
smart0074577 MIT Microtubule Interacting and Trafficking molecu 88.55
cd0267775 MIT_SNX15 MIT: domain contained within Microtubule 82.48
cd0268377 MIT_1 MIT: domain contained within Microtubule Int 82.09
cd0268176 MIT_calpain7_1 MIT: domain contained within Microt 81.17
>KOG0045|consensus Back     alignment and domain information 
Probab=100.00  E-value=5.2e-69  Score=637.60  Aligned_cols=555  Identities=22%  Similarity=0.294  Sum_probs=409.5

Q ss_pred             hhcCCCCccCCCCCCCCCc-----ccCC---CCceeeCCccccCCCeEeeCCCCCcCCcccCCCCChHHHHHHHHHhccc
Q psy1431         337 KFQYAVPFTDKEGPLILSP-----KQKR---DFVAWVRPSEFCSEPKMVAGEFVDYFSIKQTIVSDCSFVASLAVSALYE  408 (1043)
Q Consensus       337 ~~~~~~~f~D~~~~~~l~~-----~q~~---~~~~W~Rp~e~~~~p~~~~~~~~~~~dI~Qg~lgDC~~vaaL~~la~~~  408 (1043)
                      |...+.+|.|+.||+.-++     .+..   ..+.|+||+|++.+|.++. +++++.||+||.+||||||||+|++|.++
T Consensus        20 cl~~~~~F~D~~FP~~~~Sl~~~~~~p~~~~~~i~W~RP~ei~~~p~~i~-~~~~~~di~Qg~lgdCw~laA~a~la~~~   98 (612)
T KOG0045|consen   20 CLPAKSLFVDALFPAADSSLFYKLSTPLAQFSDIVWKRPQEICANPRLIV-DGPSRFDVKQGLLGDCWFLAACAALALRP   98 (612)
T ss_pred             HhhcCCcccccCCCCCCccccccccCCCcccccceecCcccccCCCCeec-CCCCcceeEEeeecchHHHHHHHHhhcCH
Confidence            4456778889888774211     1112   5899999999999999998 69999999999999999999999999987


Q ss_pred             ccccccceeEeeecCCCCCCCcccCCceEEEEEeecCceEEeeecccccccCCCceEEeecCCCCchhHHHHHHHhhhhc
Q psy1431         409 RRFGKRLVTSIIYPRNRNKEPVYNPFGKYMVKLHLNGITRKVIIDDQLPMARFNQLLCSYSQNKNELWVSILEKAYMKVM  488 (1043)
Q Consensus       409 ~~~~~~ll~~~i~P~~~~~~p~~~~~G~Y~vrl~~nG~wr~VvIDD~lP~~~~g~~l~~~s~~~~e~W~~LlEKAyaKl~  488 (1043)
                      +     |+.++| |+++.+  .+++.|+|+||||++|+|+.|+|||+||+. +|+++|++++..+|+|++||||||||++
T Consensus        99 ~-----ll~~vi-p~~~~~--~~~yaGif~f~~w~~G~W~~VvIDD~LP~~-~~~~~~~~s~~~~efW~aLlEKAyaKl~  169 (612)
T KOG0045|consen   99 E-----LLDKVI-PQDQSF--QENYAGIFHFRFWQNGEWVEVVIDDRLPTS-NGGLLFSHSSGKNEFWAALLEKAYAKLL  169 (612)
T ss_pred             H-----HHHhcc-CCCccc--ccccceEEEEEEEeCCeEEEEEeeeecceE-cCCEEEEeecCCceeHHHHHHHHHHHHh
Confidence            5     677777 766654  358999999999999999999999999998 6778899888889999999999999999


Q ss_pred             CCCCCCCCccc---cccccCCccccccccCCcccccCChhHHHHHHHHHHhcCCccccCccccccccccCcc-ccc---c
Q psy1431         489 GGYDFPGSNST---LHALNGLDTGAARAIRPNDARILTQTSVFENLFTRLHSRAMFWLPWCKREICLRMKKR-ERS---R  561 (1043)
Q Consensus       489 G~Y~~~g~~~~---L~~LTG~ipe~~i~l~~~~~~~~~~~~lw~~l~~~~~~g~li~~~~~~~~~~l~~~~~-~~~---~  561 (1043)
                      |+|+.++|+..   |.+|||+++|. +.++....  ...++++..+..++++|.++   +|++..+.....+ +..   +
T Consensus       170 GsY~~l~gg~~~~a~~~lTG~~~e~-~~l~~~~~--~~~~~l~~~~~~~~~~~~~l---~c~~~~~~~~~~~~~~~~~~g  243 (612)
T KOG0045|consen  170 GSYEALHGGSTIDALVDLTGGVTEP-FDLNKTPK--SFKNNLVWALLKSAHRGSLL---LCSIESKDPTEEEEEAKLRNG  243 (612)
T ss_pred             CcccCCCCCchhhHHHhccCCccce-eEcccCcc--hhHHHHHHHHHHhhhccCce---eeeccccccchhHHHHHhhcC
Confidence            99998877655   88999999999 99986432  11226677788888988765   4443221111111 111   1


Q ss_pred             -ccCceeeEee---ccc----eEEEEeeCCCCcCccCCCCCCCCCCCCCHHHHHHcCCCCCCCCCCCCceEEEecccccc
Q psy1431         562 -VDTMQSSVSW---SQG----LRLLQLKNPWSNVRWRGNYSELDRLHWTPELKRALNFDPNSASMFDNGIFWIDYESILR  633 (1043)
Q Consensus       562 -v~~HaYaV~~---v~~----~rll~LrNPWg~~eW~G~wsd~s~~~W~~~~~~~l~~~~~~~~~~~dG~FWm~~edf~~  633 (1043)
                       +++|||+|++   +++    .+|++||||||+.+|+|.||+.+ .+|....+..+....  ....+||+|||+|+||++
T Consensus       244 L~~~HaYsit~~~~~~~~~~~~~lirlrNPwg~~~W~G~wsd~~-~~W~~v~~~~~~~~~--~~~~~dGeFWms~~dF~~  320 (612)
T KOG0045|consen  244 LVKGHAYAITDVREVQGRGGKHRLIRLRNPWGESEWNGPWSDGS-EEWHLVDKSKLSELG--RQPLDDGEFWMSFDDFLR  320 (612)
T ss_pred             ccccccEEEEEEEEeecccccceeEEecCCcCCceeccccccCC-cchhhhCHHHHhhcc--cccccCCCeeeeHHHHHh
Confidence             9999999765   466    99999999999999999999887 699844333332111  123799999999999999


Q ss_pred             cccEEEEeccCCCCC--------ceeeeeeeeec--ccccCCCCCcccCcccccccccccceEEEEEeeCCCCCcCCCCC
Q psy1431         634 FYDVFYMNWNPGLFS--------HTFCVHQELTF--EKKNGNSTNCVKTAKQLSIVVFDYVTFKPVIIRNSSLDYFGQWP  703 (1043)
Q Consensus       634 ~F~~~~i~w~p~~f~--------~~~~~h~~~~W--~~~~~~~gg~~~~~~~~~~~~~~NPQf~l~~~~~~~~~~~~~~~  703 (1043)
                      +|+.++||+....+.        ....+++.  |  .... ..|||.+..++|    ..||||.+.+..++.        
T Consensus       321 ~F~~~~vC~~~~~~~~~~~~~~~~~~~~~~~--w~~~~~~-t~ggc~~~~~tF----~~npq~~~~~~~~~~--------  385 (612)
T KOG0045|consen  321 EFDSLTVCRLRPDWLESRNQLQWVKLSLDGE--WELARGV-TAGGCRNSVDTF----DRNPQYILAVRKPTK--------  385 (612)
T ss_pred             hCCeEeecCCCcchhhhhheeeeeeeecCCc--cceeecc-cCCCCccCcccc----cCCceEEEEecCCCc--------
Confidence            999999998877654        22345555  9  3333 348998887787    999999999987321        


Q ss_pred             CCCCCCCCccEEEEEeeccccccccccCCceeeEEEEEEeCCee-eecCCCCCCccccccccCceEEEEEEecCCCCccE
Q psy1431         704 PSTPAASPKRNFWILLTRHITQLEDFKQNREYITVLVYKNEGKR-VYYPYDPPPYLDGVRINSPHYLCKIILNENSSRKY  782 (1043)
Q Consensus       704 ~~~~~~~~~~~VwilL~rh~~~~~~~~~~~~~I~l~V~~~~g~r-v~~~~~~~~~~~g~~~ns~~~l~r~~l~p~~~~~Y  782 (1043)
                            .....|+.++++|+++...++.+...|+++||+++.++ .++.........+.++|.|++..++++||   +.|
T Consensus       386 ------~~~~~v~~~~q~~~~~~~~~~~~~~~ig~~i~~v~~~~~~~~~~~~~~~~~~~~i~~r~v~~~~~~P~---~~y  456 (612)
T KOG0045|consen  386 ------SLCAVVLALFQKTRRGERSFGANILDIGFHIYEVPLEGKYFVLDNAPIASSSSFINNREVSVRFRLPP---GTY  456 (612)
T ss_pred             ------cceEEEEEeecccccccccccceeeecceEEEEecCCCCceEecccchhcccccccceeEEEEecCCC---cce
Confidence                  12356777888898888777778888999999998652 22322233455678999999999999775   999


Q ss_pred             EEEeccccCccccceEEEEeecCCccccccCCcccccchhhhhhccccccchhccccccccCCCCCCCCCCCCCccccCC
Q psy1431         783 TLVVSQYEKMHTIYYTLRAYATCPFRLEKIENPYQFKEEVRIEIWSTYDLMFMFTSENAWRMRPSNDPPPYLDGVRINSP  862 (1043)
Q Consensus       783 tlVpst~~~~~~~~F~LriyS~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~g~~~~s~  862 (1043)
                      .+||||++++++++|+|||||+..+..++-                                                  
T Consensus       457 ~~~pst~~~~~~~~f~lrvfs~~~~~~~~~--------------------------------------------------  486 (612)
T KOG0045|consen  457 VIVPSTFEPGEEGEFLLRVFSNVKVKSEED--------------------------------------------------  486 (612)
T ss_pred             eecccCCCCCCCccEEEEEeecccccCccc--------------------------------------------------
Confidence            999999999999999999999988776530                                                  


Q ss_pred             CcceeeeeccCCCCceeEEEeeccccceeeeEEEEEecCcceEeecCCCCceeEEEEceeecCCCCCCCCCCCCCCCCCc
Q psy1431         863 HYLCKIILNENSSRKYTLVVSQYEKMHTIYYTLRAYATCPFRLEKIENPYQFKEEISGEWKGLTAGGCPNYPATYPNNPR  942 (1043)
Q Consensus       863 ~~~~~~~~~~~~~~~~~lv~s~~~~~~~~~ftL~~~s~~~~~l~~~~~~~~~~~~i~G~W~~~tAGG~~n~~~ty~~NPq  942 (1043)
                                                    ..|++             ..........-|++-+.|.|.+.-..+...+-
T Consensus       487 ------------------------------~~i~~-------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  523 (612)
T KOG0045|consen  487 ------------------------------MEISL-------------DETKRSTNIIVMKGFSLGECGDKWKLSSTLVN  523 (612)
T ss_pred             ------------------------------eEEee-------------cccccceeeeeecceehhhhchhhhccccccc
Confidence                                          00000             00011223334447777777776655555555


Q ss_pred             EEEEecCCCCCCceEEEEEcCCCceeeeEEEEEEeCCCCCcCCCcccccCCCcccceEEEEeecCCCccEEEEeccCCCC
Q psy1431         943 YQVTLDSRQSMDNTLLVFLKGPKQYSLGVKISCVRLDDETATAPFKTKDSGAYRSGFVAVEMDNLPSGTYEIMPSTFSPQ 1022 (1043)
Q Consensus       943 y~l~l~~~~~~~~~l~i~l~~~~~~~ig~~v~~~~~~~~~~~~~~~~~~sg~yr~g~~~~~~~~L~~G~Y~IVPSTf~p~ 1022 (1043)
                      .++.......    +.+.+..+    +  .+-.........+.......++.|...+.+..+....|+.....++|+...
T Consensus       524 ~k~s~~~~~~----~~~~~~~~----~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  593 (612)
T KOG0045|consen  524 TKVSRSSEFI----LTVEVVSP----L--DIEGESTLVVDIPIAIESKGSGDVAPLLNVIRLRIADPEIAYSFDSTSCCA  593 (612)
T ss_pred             cccchhhcee----eeeccccc----E--EEeccccccccccceeeccCCcccccceeeeeeeccChhheeecccccccc
Confidence            5544333321    34444444    2  222221111123334556788899999998888889999999999999999


Q ss_pred             CccCeEEEEEeCCce
Q psy1431        1023 QEGPFFLELKSSCSI 1037 (1043)
Q Consensus      1023 ~~g~F~L~V~S~~~~ 1037 (1043)
                      ++|++.++.+.+.+.
T Consensus       594 ~~~~~~~~~~~~~~~  608 (612)
T KOG0045|consen  594 TEGPLVLDELFDLSS  608 (612)
T ss_pred             ccCcchhhhhhcCCC
Confidence            999999988776544

>smart00230 CysPc Calpain-like thiol protease family Back     alignment and domain information
>cd00044 CysPc Calpains, domains IIa, IIb; calcium-dependent cytoplasmic cysteine proteinases, papain-like Back     alignment and domain information
>PF00648 Peptidase_C2: Calpain family cysteine protease This is family C2 in the peptidase classification Back     alignment and domain information
>smart00230 CysPc Calpain-like thiol protease family Back     alignment and domain information
>cd00044 CysPc Calpains, domains IIa, IIb; calcium-dependent cytoplasmic cysteine proteinases, papain-like Back     alignment and domain information
>PF00648 Peptidase_C2: Calpain family cysteine protease This is family C2 in the peptidase classification Back     alignment and domain information
>KOG0045|consensus Back     alignment and domain information
>smart00720 calpain_III calpain_III Back     alignment and domain information
>cd00214 Calpain_III Calpain, subdomain III Back     alignment and domain information
>PF01067 Calpain_III: Calpain large subunit, domain III; InterPro: IPR022682 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families Back     alignment and domain information
>cd00214 Calpain_III Calpain, subdomain III Back     alignment and domain information
>smart00720 calpain_III calpain_III Back     alignment and domain information
>PF01067 Calpain_III: Calpain large subunit, domain III; InterPro: IPR022682 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families Back     alignment and domain information
>cd02680 MIT_calpain7_2 MIT: domain contained within Microtubule Interacting and Trafficking molecules Back     alignment and domain information
>cd02684 MIT_2 MIT: domain contained within Microtubule Interacting and Trafficking molecules Back     alignment and domain information
>cd02678 MIT_VPS4 MIT: domain contained within Microtubule Interacting and Trafficking molecules Back     alignment and domain information
>PF04212 MIT: MIT (microtubule interacting and transport) domain; InterPro: IPR007330 The MIT domain is found in vacuolar sorting proteins, spastin (probable ATPase involved in the assembly or function of nuclear protein complexes), and a sorting nexin, which may play a role in intracellular trafficking Back     alignment and domain information
>cd02656 MIT MIT: domain contained within Microtubule Interacting and Trafficking molecules Back     alignment and domain information
>smart00745 MIT Microtubule Interacting and Trafficking molecule domain Back     alignment and domain information
>cd02677 MIT_SNX15 MIT: domain contained within Microtubule Interacting and Trafficking molecules Back     alignment and domain information
>cd02683 MIT_1 MIT: domain contained within Microtubule Interacting and Trafficking molecules Back     alignment and domain information
>cd02681 MIT_calpain7_1 MIT: domain contained within Microtubule Interacting and Trafficking molecules Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query1043
2qfe_A148 Distal C2-Like Domain Of Human Calpain-7 Length = 1 4e-26
2p0r_A333 Structure Of Human Calpain 9 In Complex With Leupep 9e-15
1ziv_A339 Catalytic Domain Of Human Calpain-9 Length = 339 1e-14
2nqa_A326 Catalytic Domain Of Human Calpain 8 Length = 326 5e-13
1kfx_L699 Crystal Structure Of Human M-Calpain Form I Length 1e-12
1kfx_L 699 Crystal Structure Of Human M-Calpain Form I Length 5e-04
1mdw_A328 Crystal Structure Of Calcium-bound Protease Core Of 2e-12
1u5i_A700 Crystal Structure Analysis Of Rat M-Calpain Mutant 2e-12
1u5i_A 700 Crystal Structure Analysis Of Rat M-Calpain Mutant 9e-04
3df0_A714 Calcium-Dependent Complex Between M-Calpain And Cal 2e-12
1df0_A700 Crystal Structure Of M-Calpain Length = 700 3e-12
1zcm_A321 Human Calpain Protease Core Inhibited By Zllych2f L 2e-11
2ary_A351 Catalytic Domain Of Human Calpain-1 Length = 351 5e-11
1tl9_A339 High Resolution Crystal Structure Of Calpain I Prot 5e-11
1kxr_A339 Crystal Structure Of Calcium-Bound Protease Core Of 9e-10
1qxp_A 900 Crystal Structure Of A Mu-Like Calpain Length = 900 2e-09
1qxp_A 900 Crystal Structure Of A Mu-Like Calpain Length = 900 1e-07
>pdb|2QFE|A Chain A, Distal C2-Like Domain Of Human Calpain-7 Length = 148 Back     alignment and structure 
Iteration: 1

 Score =  117 bits (292), Expect = 4e-26,   Method: Compositional matrix adjust.
 Identities = 56/134 (41%), Positives = 84/134 (62%), Gaps = 4/134 (2%)
Query: 910  NPYQFKEEISGEWKGLTAGGCPNYPATYPNNPRYQVTLDSRQSMDNTLLVFLKGPKQYSL 969
            +PY   + I+G+W G +AGGC N+  T+ NNP YQ  ++        LL+ L+GP+QYS+
Sbjct: 19   SPYTLSKRINGKWSGQSAGGCGNFQETHKNNPIYQFHIEK----TGPLLIELRGPRQYSV 74
Query: 970  GVKISCVRLDDETATAPFKTKDSGAYRSGFVAVEMDNLPSGTYEIMPSTFSPQQEGPFFL 1029
            G ++  V    +     F  K SG YR GF  +E++N+PSG + I+PSTF P+QEGPFFL
Sbjct: 75   GFEVVTVSTLGDPGPHGFLRKSSGDYRCGFCYLELENIPSGIFNIIPSTFLPKQEGPFFL 134
Query: 1030 ELKSSCSITISRIR 1043
            +  S   I I++++
Sbjct: 135  DFNSIIPIKITQLQ 148
>pdb|2P0R|A Chain A, Structure Of Human Calpain 9 In Complex With Leupeptin Length = 333 Back     alignment and structure
>pdb|1ZIV|A Chain A, Catalytic Domain Of Human Calpain-9 Length = 339 Back     alignment and structure
>pdb|2NQA|A Chain A, Catalytic Domain Of Human Calpain 8 Length = 326 Back     alignment and structure
>pdb|1KFX|L Chain L, Crystal Structure Of Human M-Calpain Form I Length = 699 Back     alignment and structure
>pdb|1KFX|L Chain L, Crystal Structure Of Human M-Calpain Form I Length = 699 Back     alignment and structure
>pdb|1MDW|A Chain A, Crystal Structure Of Calcium-bound Protease Core Of Calpain Ii Reveals The Basis For Intrinsic Inactivation Length = 328 Back     alignment and structure
>pdb|1U5I|A Chain A, Crystal Structure Analysis Of Rat M-Calpain Mutant Lys10 Thr Length = 700 Back     alignment and structure
>pdb|1U5I|A Chain A, Crystal Structure Analysis Of Rat M-Calpain Mutant Lys10 Thr Length = 700 Back     alignment and structure
>pdb|3DF0|A Chain A, Calcium-Dependent Complex Between M-Calpain And Calpastatin Length = 714 Back     alignment and structure
>pdb|1DF0|A Chain A, Crystal Structure Of M-Calpain Length = 700 Back     alignment and structure
>pdb|1ZCM|A Chain A, Human Calpain Protease Core Inhibited By Zllych2f Length = 321 Back     alignment and structure
>pdb|2ARY|A Chain A, Catalytic Domain Of Human Calpain-1 Length = 351 Back     alignment and structure
>pdb|1TL9|A Chain A, High Resolution Crystal Structure Of Calpain I Protease Core In Complex With Leupeptin Length = 339 Back     alignment and structure
>pdb|1KXR|A Chain A, Crystal Structure Of Calcium-Bound Protease Core Of Calpain I Length = 339 Back     alignment and structure
>pdb|1QXP|A Chain A, Crystal Structure Of A Mu-Like Calpain Length = 900 Back     alignment and structure
>pdb|1QXP|A Chain A, Crystal Structure Of A Mu-Like Calpain Length = 900 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query1043
3bow_A714 Calpain-2 catalytic subunit; cysteine protease, in 3e-55
3bow_A714 Calpain-2 catalytic subunit; cysteine protease, in 7e-29
3bow_A 714 Calpain-2 catalytic subunit; cysteine protease, in 6e-06
2nqa_A326 Calpain 8; calpain, calcium-dependent cytoplasmic 3e-51
2nqa_A326 Calpain 8; calpain, calcium-dependent cytoplasmic 4e-30
1qxp_A 900 MU-like calpain; M-calpain, MU-calpain, catalytic 2e-46
1qxp_A900 MU-like calpain; M-calpain, MU-calpain, catalytic 1e-23
1qxp_A 900 MU-like calpain; M-calpain, MU-calpain, catalytic 3e-05
1ziv_A339 Calpain 9; cysteine protease, papain, calcium-depe 7e-46
1ziv_A339 Calpain 9; cysteine protease, papain, calcium-depe 3e-27
2r9f_A339 Calpain-1 catalytic subunit; protease, peptidase, 8e-43
2r9f_A339 Calpain-1 catalytic subunit; protease, peptidase, 1e-25
2qfe_A148 Calpain-7; C2-like domain, hydrolase, nuclear prot 4e-42
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 3e-11
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 2e-09
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 7e-08
>3bow_A Calpain-2 catalytic subunit; cysteine protease, inhibitor, cell membrane, hydrolase, MEMB protease, thiol protease, phosphoprotein; 2.40A {Rattus norvegicus} PDB: 3df0_A 1df0_A 1u5i_A 1kfu_L 1kfx_L Length = 714 Back     alignment and structure
 Score =  204 bits (519), Expect = 3e-55
 Identities = 90/524 (17%), Positives = 171/524 (32%), Gaps = 58/524 (11%)

Query: 342 VPFTDKEGPLILS---------PKQKRDFVAWVRPSEFCSEPKMVAGEFVDYFSIKQTIV 392
             F D   P + S            K   + W RP+E C++P+ + G       I Q  +
Sbjct: 44  ALFQDPSFPALPSSLGFKELGPYSSKTRGIEWKRPTEICADPQFIIGG-ATRTDICQGAL 102

Query: 393 SDCSFVASLAVSALYERRFGKRLVTSIIYPRNRNKEPVYNPFGKYMVKLHLNGITRKVII 452
            D   +A++A   L E    +      + P +++ +   N  G +  +    G   +V++
Sbjct: 103 GDSWLLAAIASLTLNEEILAR------VVPLDQSFQE--NYAGIFHFQFWQYGEWVEVVV 154

Query: 453 DDQLPMARFNQLLCSYSQNKNELWVSILEKAYMKVMGGYDFPGSNSTLHALNGLDTGAAR 512
           DD+LP     +LL  +S   +E W ++LEKAY K+ G Y+     +T         G A 
Sbjct: 155 DDRLPTKD-GELLFVHSAEGSEFWSALLEKAYAKINGCYEALSGGATTEGFEDFTGGIAE 213

Query: 513 AIRPNDARILTQTSVFENLFTRLHSRAMF-----WLPWCKREICLRMKKRE--RSRVDTM 565
                        ++F+ +   L   ++             E     K  +     V   
Sbjct: 214 WYELRKP----PPNLFKIIQKALEKGSLLGCSIDITSAADSEAVTYQKLVKGHAYSVTGA 269

Query: 566 QSSVSWSQGLRLLQLKNPWSNVRWRGNYSELDRLHWTPELKRALNFDPNSASMFDNGIFW 625
           +   S     +L++++NPW  V W G +++      T + +   N         ++G FW
Sbjct: 270 EEVESSGSLQKLIRIRNPWGQVEWTGKWNDNCPSWNTVDPEVRANLTERQ----EDGEFW 325

Query: 626 IDYESILRFYD-VFYMNWNPGLFSHTFCVHQELTFEKKNGNSTNCVKTAKQLSIVVFDYV 684
           + +   LR Y  +   N  P   +       +LT       +     TA         + 
Sbjct: 326 MSFSDFLRHYSRLEICNLTPDTLTCDSYKKWKLTKMD---GNWRRGSTAGGCRNYPNTFW 382

Query: 685 TFKPVIIRNSSLDYFGQWPPSTPAASPKRNFWILLT-RHITQLEDFKQNREYITVLVYKN 743
                +I+    D                 F + L  +H  +     ++   I   +Y+ 
Sbjct: 383 MNPQYLIKLEEED------EDDEDGERGCTFLVGLIQKHRRRQRKMGEDMHTIGFGIYEV 436

Query: 744 EG----------KRVYYPYDPPPYLDGVRINSPHYLCKIILNENSSRKYTLVVSQYEKMH 793
                        + ++            IN    L +  L       Y LV S +E   
Sbjct: 437 PEELTGQTNIHLSKNFFLTTRARERSDTFINLREVLNRFKLPPGE---YVLVPSTFEPHK 493

Query: 794 TIYYTLRAYATCPFRLEKIENPYQFKEEVRIEIWSTYDLMFMFT 837
              + +R ++      + +++  +   E            F   
Sbjct: 494 NGDFCIRVFSEKKADYQTVDDEIEANIEEIEANEEDIGDGFRRL 537
>3bow_A Calpain-2 catalytic subunit; cysteine protease, inhibitor, cell membrane, hydrolase, MEMB protease, thiol protease, phosphoprotein; 2.40A {Rattus norvegicus} PDB: 3df0_A 1df0_A 1u5i_A 1kfu_L 1kfx_L Length = 714 Back     alignment and structure
>3bow_A Calpain-2 catalytic subunit; cysteine protease, inhibitor, cell membrane, hydrolase, MEMB protease, thiol protease, phosphoprotein; 2.40A {Rattus norvegicus} PDB: 3df0_A 1df0_A 1u5i_A 1kfu_L 1kfx_L Length = 714 Back     alignment and structure
>2nqa_A Calpain 8; calpain, calcium-dependent cytoplasmic cysteine proteinases, like, EF-hand, structural genomics, structural genomics CON SGC; HET: AR7; 2.20A {Homo sapiens} Length = 326 Back     alignment and structure
>2nqa_A Calpain 8; calpain, calcium-dependent cytoplasmic cysteine proteinases, like, EF-hand, structural genomics, structural genomics CON SGC; HET: AR7; 2.20A {Homo sapiens} Length = 326 Back     alignment and structure
>1qxp_A MU-like calpain; M-calpain, MU-calpain, catalytic triad, Ca(2+) requirement, hydrolase chimera; 2.80A {Rattus norvegicus} SCOP: a.39.1.8 a.39.1.8 b.14.1.1 d.3.1.3 Length = 900 Back     alignment and structure
>1qxp_A MU-like calpain; M-calpain, MU-calpain, catalytic triad, Ca(2+) requirement, hydrolase chimera; 2.80A {Rattus norvegicus} SCOP: a.39.1.8 a.39.1.8 b.14.1.1 d.3.1.3 Length = 900 Back     alignment and structure
>1qxp_A MU-like calpain; M-calpain, MU-calpain, catalytic triad, Ca(2+) requirement, hydrolase chimera; 2.80A {Rattus norvegicus} SCOP: a.39.1.8 a.39.1.8 b.14.1.1 d.3.1.3 Length = 900 Back     alignment and structure
>1ziv_A Calpain 9; cysteine protease, papain, calcium-dependent, thiol protease, structural genomics consortium, SGC, hydrolase; 2.31A {Homo sapiens} SCOP: d.3.1.3 PDB: 2p0r_A* Length = 339 Back     alignment and structure
>1ziv_A Calpain 9; cysteine protease, papain, calcium-dependent, thiol protease, structural genomics consortium, SGC, hydrolase; 2.31A {Homo sapiens} SCOP: d.3.1.3 PDB: 2p0r_A* Length = 339 Back     alignment and structure
>2r9f_A Calpain-1 catalytic subunit; protease, peptidase, inhibitor, alpha-ketoamide, hydrolase, thiol protease; HET: K2Z; 1.60A {Rattus norvegicus} SCOP: d.3.1.3 PDB: 1tlo_A* 2g8e_A* 1tl9_A* 2nqg_A* 2nqi_A* 2r9c_A* 2g8j_A* 1kxr_A 2ary_A 1zcm_A* 1mdw_A Length = 339 Back     alignment and structure
>2r9f_A Calpain-1 catalytic subunit; protease, peptidase, inhibitor, alpha-ketoamide, hydrolase, thiol protease; HET: K2Z; 1.60A {Rattus norvegicus} SCOP: d.3.1.3 PDB: 1tlo_A* 2g8e_A* 1tl9_A* 2nqg_A* 2nqi_A* 2r9c_A* 2g8j_A* 1kxr_A 2ary_A 1zcm_A* 1mdw_A Length = 339 Back     alignment and structure
>2qfe_A Calpain-7; C2-like domain, hydrolase, nuclear protein, protease, thiol protease; 1.45A {Homo sapiens} Length = 148 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query1043
3bow_A714 Calpain-2 catalytic subunit; cysteine protease, in 100.0
1qxp_A 900 MU-like calpain; M-calpain, MU-calpain, catalytic 100.0
1ziv_A339 Calpain 9; cysteine protease, papain, calcium-depe 100.0
2r9f_A339 Calpain-1 catalytic subunit; protease, peptidase, 100.0
2nqa_A326 Calpain 8; calpain, calcium-dependent cytoplasmic 100.0
2nqa_A326 Calpain 8; calpain, calcium-dependent cytoplasmic 100.0
1ziv_A339 Calpain 9; cysteine protease, papain, calcium-depe 100.0
2r9f_A339 Calpain-1 catalytic subunit; protease, peptidase, 100.0
3bow_A714 Calpain-2 catalytic subunit; cysteine protease, in 100.0
1qxp_A900 MU-like calpain; M-calpain, MU-calpain, catalytic 100.0
2qfe_A148 Calpain-7; C2-like domain, hydrolase, nuclear prot 99.97
2qfe_A148 Calpain-7; C2-like domain, hydrolase, nuclear prot 99.69
2cpt_A117 SKD1 protein, vacuolar sorting protein 4B; MIT, he 89.24
2v6x_A85 Vacuolar protein sorting-associated protein 4; pro 88.78
3sg6_A 450 Gcamp2, myosin light chain kinase, green fluoresce 88.35
4a5x_A86 MITD1, MIT domain-containing protein 1; protein tr 88.14
2w2u_A83 Hypothetical P60 katanin; hydrolase transport comp 88.11
1wfd_A93 Hypothetical protein 1500032H18; MIT domain, struc 84.99
2v6y_A83 AAA family ATPase, P60 katanin; MIT, VPS4, archaea 84.54
2dl1_A116 Spartin; SPG20, MIT, structural genomics, NPPSFA, 81.94
>3bow_A Calpain-2 catalytic subunit; cysteine protease, inhibitor, cell membrane, hydrolase, MEMB protease, thiol protease, phosphoprotein; 2.40A {Rattus norvegicus} PDB: 3df0_A 1df0_A 1u5i_A 1kfu_L 1kfx_L Back     alignment and structure
Probab=100.00  E-value=4.3e-73  Score=703.77  Aligned_cols=434  Identities=20%  Similarity=0.370  Sum_probs=342.3

Q ss_pred             hhhhcCCCCccCCCCCCC---C-----Cccc-CCCCceeeCCccccCCCeEeeCCCCCcCCcccCCCCChHHHHHHHHHh
Q psy1431         335 AEKFQYAVPFTDKEGPLI---L-----SPKQ-KRDFVAWVRPSEFCSEPKMVAGEFVDYFSIKQTIVSDCSFVASLAVSA  405 (1043)
Q Consensus       335 ~~~~~~~~~f~D~~~~~~---l-----~~~q-~~~~~~W~Rp~e~~~~p~~~~~~~~~~~dI~Qg~lgDC~~vaaL~~la  405 (1043)
                      ..|...+.+|+|++||+.   |     .+.+ +...+.|+||.||+++|+|+. +++++.||+||.+|||||||||+++|
T Consensus        37 ~~c~~~~~~f~D~~Fp~~~~sl~~~~~~~~~~~~~~~~W~Rp~e~~~~p~~~~-~~~~~~di~QG~lgDCw~laala~la  115 (714)
T 3bow_A           37 NECLEAGALFQDPSFPALPSSLGFKELGPYSSKTRGIEWKRPTEICADPQFII-GGATRTDICQGALGDSWLLAAIASLT  115 (714)
T ss_dssp             HHHHHHTCCCCCTTSCSSGGGTCSSTTSTTCGGGTTCEEECHHHHCSSCBSCS-SCSCGGGCBCCSSSCHHHHHHHHHHT
T ss_pred             HHHHHcCCeeeCcCCCCCccccccCCCCccccccCCceEEChHHHhcCCeeee-CCCCccccccCCcCChHHHHHHHHHH
Confidence            345667888999999874   2     2222 235689999999999999988 68999999999999999999999999


Q ss_pred             cccccccccceeEeeecCCCCCCCcccCCceEEEEEeecCceEEeeecccccccCCCceEEeecCCCCchhHHHHHHHhh
Q psy1431         406 LYERRFGKRLVTSIIYPRNRNKEPVYNPFGKYMVKLHLNGITRKVIIDDQLPMARFNQLLCSYSQNKNELWVSILEKAYM  485 (1043)
Q Consensus       406 ~~~~~~~~~ll~~~i~P~~~~~~p~~~~~G~Y~vrl~~nG~wr~VvIDD~lP~~~~g~~l~~~s~~~~e~W~~LlEKAya  485 (1043)
                      .++.     +|.+++ |.++++.  .++.|+|+||||+||+|+.|+|||+||+.. |+++|++|.+++|+|++|||||||
T Consensus       116 ~~~~-----ll~~v~-~~~~~~~--~~~~G~y~~~~~~~G~w~~VvvDD~lP~~~-g~~~f~~s~~~~e~W~~LlEKAyA  186 (714)
T 3bow_A          116 LNEE-----ILARVV-PLDQSFQ--ENYAGIFHFQFWQYGEWVEVVVDDRLPTKD-GELLFVHSAEGSEFWSALLEKAYA  186 (714)
T ss_dssp             TSHH-----HHHHHS-CTTCCSS--SSCSSEEEEEEEETTEEEEEEEESCEEEET-TEESSCBCSSTTBCHHHHHHHHHH
T ss_pred             hChH-----HHHhhc-CcCcCcc--cCCceEEEEEEeeCCEEEEEEEeccceeeC-CceEEeecCCCCcchHHHHHHHHH
Confidence            9875     666655 7766544  378999999999999999999999999984 999999999999999999999999


Q ss_pred             hhcCCCCCC-CCccc--cccccCCccccccccCCcccccCChhHHHHHHHHHHhcCCccccCccccccccccC--ccc-c
Q psy1431         486 KVMGGYDFP-GSNST--LHALNGLDTGAARAIRPNDARILTQTSVFENLFTRLHSRAMFWLPWCKREICLRMK--KRE-R  559 (1043)
Q Consensus       486 Kl~G~Y~~~-g~~~~--L~~LTG~ipe~~i~l~~~~~~~~~~~~lw~~l~~~~~~g~li~~~~~~~~~~l~~~--~~~-~  559 (1043)
                      |+||||+++ ||++.  |++||||+++. +.++.      .++.+|+.|.+++++|++|   +|++.. ..-.  +.. .
T Consensus       187 K~~G~Y~~l~gg~~~~al~~lTG~~~~~-~~l~~------~~~~l~~~l~~~~~~g~l~---~~~~~~-~~~~~~~~~~~  255 (714)
T 3bow_A          187 KINGCYEALSGGATTEGFEDFTGGIAEW-YELRK------PPPNLFKIIQKALEKGSLL---GCSIDI-TSAADSEAVTY  255 (714)
T ss_dssp             HHTSSSGGGSSBCHHHHHHHHHCCEEEE-EETTS------CCTTHHHHHHHHHHTTCEE---EEECCS-TTSCTTCCBCT
T ss_pred             HHhCCcccccCCCHHHHHHHhhCCCeEE-EEcCC------CcHHHHHHHHHHHhCCCeE---EEEccc-CCcccccchhc
Confidence            999999974 66655  99999999999 98874      2578999999999999875   665421 0001  111 1


Q ss_pred             cc-ccCceeeEeecc-------ceEEEEeeCCCCcCccCCCCCCCCCCCCC---HHHHHHcCCCCCCCCCCCCceEEEec
Q psy1431         560 SR-VDTMQSSVSWSQ-------GLRLLQLKNPWSNVRWRGNYSELDRLHWT---PELKRALNFDPNSASMFDNGIFWIDY  628 (1043)
Q Consensus       560 ~~-v~~HaYaV~~v~-------~~rll~LrNPWg~~eW~G~wsd~s~~~W~---~~~~~~l~~~~~~~~~~~dG~FWm~~  628 (1043)
                      .+ +.+|||+|+++.       +.+||+||||||+.||+|+|||.| .+|+   ++++++|+.      ..+||+|||+|
T Consensus       256 ~GL~~~HaYsvl~~~~v~~~~~~~~lv~lrNPWg~~ew~G~wsd~s-~~W~~~~~~~~~~l~~------~~~dg~FWm~~  328 (714)
T 3bow_A          256 QKLVKGHAYSVTGAEEVESSGSLQKLIRIRNPWGQVEWTGKWNDNC-PSWNTVDPEVRANLTE------RQEDGEFWMSF  328 (714)
T ss_dssp             TSCBTTSCEEEEEEEEEEETTEEEEEEEEECTTSCCCCCSTTSTTC-GGGGGSCHHHHHHHCC------CCCSSEEEEEH
T ss_pred             CCCcCCceEEEeeeEEeecCCCceEEEEEECCCCCcccCCCCCCCC-ccccccCHHHHHHhCC------CCCCCeEEEEh
Confidence            12 999999987652       479999999999999999999998 6998   889999986      34899999999


Q ss_pred             ccccccccEEEEe-ccCCCCC-------ceeeeeeeeecccccCCCCCcccCcccccccccccceEEEEEeeCCCCCcCC
Q psy1431         629 ESILRFYDVFYMN-WNPGLFS-------HTFCVHQELTFEKKNGNSTNCVKTAKQLSIVVFDYVTFKPVIIRNSSLDYFG  700 (1043)
Q Consensus       629 edf~~~F~~~~i~-w~p~~f~-------~~~~~h~~~~W~~~~~~~gg~~~~~~~~~~~~~~NPQf~l~~~~~~~~~~~~  700 (1043)
                      +||+++|+.|+|| +.|+.+.       +...+++.  |.++..+ |||.+...++    +.||||.|++..++.     
T Consensus       329 ~df~~~F~~~~ic~~~~~~~~~~~~~~w~~~~~~g~--W~~g~ta-GG~~~~~~tf----~~NPqf~l~v~~~~~-----  396 (714)
T 3bow_A          329 SDFLRHYSRLEICNLTPDTLTCDSYKKWKLTKMDGN--WRRGSTA-GGCRNYPNTF----WMNPQYLIKLEEEDE-----  396 (714)
T ss_dssp             HHHHHHCCEEEEEESSSSCTTCSSCCEEEEEEEEEE--ECTTTTC-CCCTTCHHHH----TTSCCEEEEECGGGC-----
T ss_pred             HHHHhhCCeEEEEEecccccccccCcceEEEEEece--eccCCCC-CCCCCccccc----cCCceEEEEEccCCc-----
Confidence            9999999999986 6777553       12345666  9987755 8998765565    999999999987421     


Q ss_pred             CCCCCCCCCCCccEEEEEeecc-ccccccccCCceeeEEEEEEeCC----ee-eecC-----CCCCCccccccccCceEE
Q psy1431         701 QWPPSTPAASPKRNFWILLTRH-ITQLEDFKQNREYITVLVYKNEG----KR-VYYP-----YDPPPYLDGVRINSPHYL  769 (1043)
Q Consensus       701 ~~~~~~~~~~~~~~VwilL~rh-~~~~~~~~~~~~~I~l~V~~~~g----~r-v~~~-----~~~~~~~~g~~~ns~~~l  769 (1043)
                         + ..+....++|+|.|.|+ .+..+..+.+...|||+||+++.    .+ ..++     ........+.|+|+|++.
T Consensus       397 ---~-~~~~~~~~~v~v~L~Q~~~r~~~~~g~~~~~Igf~v~~~~~~~~~~~~~~l~~~ff~~~~~~~~s~~f~~~Rev~  472 (714)
T 3bow_A          397 ---D-DEDGERGCTFLVGLIQKHRRRQRKMGEDMHTIGFGIYEVPEELTGQTNIHLSKNFFLTTRARERSDTFINLREVL  472 (714)
T ss_dssp             ---B-CGGGCCBEEEEEEEEEESCGGGGGGTCCCCCEEEEEEECCGGGSSCTTCCCCHHHHHHCCCSEECSCEESSSEEE
T ss_pred             ---c-ccccCCccEEEEEeeeeccccccccCCCcceEEEEEEEecccccCccccccchhhccccCCccccCCcccccceE
Confidence               0 00112348899988654 44333334556789999999853    11 2222     122234567899999999


Q ss_pred             EEEEecCCCCccEEEEeccccCccccceEEEEeecCCccccccCCc
Q psy1431         770 CKIILNENSSRKYTLVVSQYEKMHTIYYTLRAYATCPFRLEKIENP  815 (1043)
Q Consensus       770 ~r~~l~p~~~~~YtlVpst~~~~~~~~F~LriyS~~~~~~~~l~~~  815 (1043)
                      +++.|+|   |.|+|||||++++++++|+|||||+++..+.++++.
T Consensus       473 ~~~~L~p---G~Y~IVPstf~p~~e~~F~Lrv~s~~~~~~~el~~~  515 (714)
T 3bow_A          473 NRFKLPP---GEYVLVPSTFEPHKNGDFCIRVFSEKKADYQTVDDE  515 (714)
T ss_dssp             EEEEECS---EEEEEEEEESSTTCCEEEEEEEEEEESSCC--CCCS
T ss_pred             EEEEeCC---CCeEEEEecCCCCCccceeEEEeccCCcceeecccc
Confidence            9999987   899999999999999999999999999998888765
>1qxp_A MU-like calpain; M-calpain, MU-calpain, catalytic triad, Ca(2+) requirement, hydrolase chimera; 2.80A {Rattus norvegicus} SCOP: a.39.1.8 a.39.1.8 b.14.1.1 d.3.1.3 Back     alignment and structure
>1ziv_A Calpain 9; cysteine protease, papain, calcium-dependent, thiol protease, structural genomics consortium, SGC, hydrolase; 2.31A {Homo sapiens} SCOP: d.3.1.3 PDB: 2p0r_A* Back     alignment and structure
>2r9f_A Calpain-1 catalytic subunit; protease, peptidase, inhibitor, alpha-ketoamide, hydrolase, thiol protease; HET: K2Z; 1.60A {Rattus norvegicus} SCOP: d.3.1.3 PDB: 1tlo_A* 2g8e_A* 1tl9_A* 2nqg_A* 2nqi_A* 2r9c_A* 2g8j_A* 1kxr_A 2ary_A 1zcm_A* 1mdw_A Back     alignment and structure
>2nqa_A Calpain 8; calpain, calcium-dependent cytoplasmic cysteine proteinases, like, EF-hand, structural genomics, structural genomics CON SGC; HET: AR7; 2.20A {Homo sapiens} Back     alignment and structure
>2nqa_A Calpain 8; calpain, calcium-dependent cytoplasmic cysteine proteinases, like, EF-hand, structural genomics, structural genomics CON SGC; HET: AR7; 2.20A {Homo sapiens} Back     alignment and structure
>1ziv_A Calpain 9; cysteine protease, papain, calcium-dependent, thiol protease, structural genomics consortium, SGC, hydrolase; 2.31A {Homo sapiens} SCOP: d.3.1.3 PDB: 2p0r_A* Back     alignment and structure
>2r9f_A Calpain-1 catalytic subunit; protease, peptidase, inhibitor, alpha-ketoamide, hydrolase, thiol protease; HET: K2Z; 1.60A {Rattus norvegicus} SCOP: d.3.1.3 PDB: 1tlo_A* 2g8e_A* 1tl9_A* 2nqg_A* 2nqi_A* 2r9c_A* 2g8j_A* 1kxr_A 2ary_A 1zcm_A* 1mdw_A Back     alignment and structure
>3bow_A Calpain-2 catalytic subunit; cysteine protease, inhibitor, cell membrane, hydrolase, MEMB protease, thiol protease, phosphoprotein; 2.40A {Rattus norvegicus} PDB: 3df0_A 1df0_A 1u5i_A 1kfu_L 1kfx_L Back     alignment and structure
>1qxp_A MU-like calpain; M-calpain, MU-calpain, catalytic triad, Ca(2+) requirement, hydrolase chimera; 2.80A {Rattus norvegicus} SCOP: a.39.1.8 a.39.1.8 b.14.1.1 d.3.1.3 Back     alignment and structure
>2qfe_A Calpain-7; C2-like domain, hydrolase, nuclear protein, protease, thiol protease; 1.45A {Homo sapiens} Back     alignment and structure
>2qfe_A Calpain-7; C2-like domain, hydrolase, nuclear protein, protease, thiol protease; 1.45A {Homo sapiens} Back     alignment and structure
>2cpt_A SKD1 protein, vacuolar sorting protein 4B; MIT, helix bundle, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.7.14.1 Back     alignment and structure
>2v6x_A Vacuolar protein sorting-associated protein 4; protein transport, vacuole, endosome, transport, ESCRT-III, VPS2, VPS4, SKD1, VPS4B, VPS4A; 1.98A {Saccharomyces cerevisiae} Back     alignment and structure
>3sg6_A Gcamp2, myosin light chain kinase, green fluorescent PROT calmodulin chimera; calcium sensor, fluorescent protein; HET: CRO; 1.70A {Gallus gallus} PDB: 3evu_A* 3ek4_A* 3ek7_A* 3evv_A* 3ek8_A* 3ekh_A* 3sg2_A* 3sg3_A* 3sg7_A* 3ekj_A* 3sg4_A* 3sg5_A* 3evr_A* 3o78_A* 3o77_A* 1trf_A Back     alignment and structure
>4a5x_A MITD1, MIT domain-containing protein 1; protein transport, ESCRT, cytokinesis, midbody; HET: P15; 1.91A {Homo sapiens} Back     alignment and structure
>2w2u_A Hypothetical P60 katanin; hydrolase transport complex, nucleotide-binding, ESCRT, AAA-ATPase, cytokinesis, ATP-binding; 2.20A {Sulfolobus acidocaldarius} Back     alignment and structure
>1wfd_A Hypothetical protein 1500032H18; MIT domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Mus musculus} SCOP: a.7.14.1 Back     alignment and structure
>2v6y_A AAA family ATPase, P60 katanin; MIT, VPS4, archaea, AAA-ATPase, ATP-binding, microtubule INT and trafficking domain, nucleotide-binding; HET: SRT; 2.40A {Sulfolobus solfataricus} PDB: 2v6y_B* Back     alignment and structure
>2dl1_A Spartin; SPG20, MIT, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 1043
d1mdwa_323 d.3.1.3 (A:) Calpain large subunit, catalytic doma 4e-46
d1mdwa_323 d.3.1.3 (A:) Calpain large subunit, catalytic doma 2e-31
d2r9fa1322 d.3.1.3 (A:33-354) Calpain large subunit, catalyti 1e-44
d2r9fa1322 d.3.1.3 (A:33-354) Calpain large subunit, catalyti 7e-29
d1ziva1310 d.3.1.3 (A:28-337) Calpain large subunit, catalyti 1e-41
d1ziva1310 d.3.1.3 (A:28-337) Calpain large subunit, catalyti 5e-27
d1df0a2159 b.14.1.1 (A:356-514) Calpain large subunit, middle 4e-21
d1df0a2159 b.14.1.1 (A:356-514) Calpain large subunit, middle 2e-08
d1df0a2159 b.14.1.1 (A:356-514) Calpain large subunit, middle 3e-04
d1qxpa3159 b.14.1.1 (A:356-514) Calpain large subunit, middle 4e-20
>d1mdwa_ d.3.1.3 (A:) Calpain large subunit, catalytic domain (domain II) {Rat (Rattus norvegicus), M-type [TaxId: 10116]} Length = 323 Back     information, alignment and structure

class: Alpha and beta proteins (a+b)
fold: Cysteine proteinases
superfamily: Cysteine proteinases
family: Calpain large subunit, catalytic domain (domain II)
domain: Calpain large subunit, catalytic domain (domain II)
species: Rat (Rattus norvegicus), M-type [TaxId: 10116]

 Score =  166 bits (421), Expect = 4e-46
 Identities = 65/337 (19%), Positives = 119/337 (35%), Gaps = 40/337 (11%)

Query: 325 NFVPFMNVD----LAEKFQYAVPFTDKEGPLILS---------PKQKRDFVAWVRPSEFC 371
             + ++N D      E  +    F D   P + S            K   + W RP+E C
Sbjct: 2   RAIKYLNQDYETLRNECLEAGALFQDPSFPALPSSLGFKELGPYSSKTRGIEWKRPTEIC 61

Query: 372 SEPKMVAGEFVDYFSIKQTIVSDCSFVASLAVSALYERRFGKRLVTSIIYPRNRNKEPVY 431
           ++P+ + G       I Q  + D   +A++A   L E    + +          ++    
Sbjct: 62  ADPQFIIGG-ATRTDICQGALGDSWLLAAIASLTLNEEILARVVPL--------DQSFQE 112

Query: 432 NPFGKYMVKLHLNGITRKVIIDDQLPMARFNQLLCSYSQNKNELWVSILEKAYMKVMGGY 491
           N  G +  +    G   +V++DD+LP     +LL  +S   +E W ++LEKAY K+ G Y
Sbjct: 113 NYAGIFHFQFWQYGEWVEVVVDDRLPTKD-GELLFVHSAEGSEFWSALLEKAYAKINGCY 171

Query: 492 DFPGSNSTLHALNGLDTGAARAIRPNDARILTQTSVFENLFTRLHSRAMFWLPWCKREIC 551
           +     +T         G A                   +  +   +             
Sbjct: 172 EALSGGATTEGFEDFTGGIAEWYELRK-----PPPNLFKIIQKALEKGSLLGCSIDITSA 226

Query: 552 LRMKKRERSRV-------DTMQSSVSWSQGL-RLLQLKNPWSNVRWRGNYSELDRLHWTP 603
              +     ++        T    V  S  L +L++++NPW  V W G +++      T 
Sbjct: 227 ADSEAVTYQKLVKGHAYSVTGAEEVESSGSLQKLIRIRNPWGQVEWTGKWNDNCPSWNTV 286

Query: 604 ELKRALNFDPNSASMFDNGIFWIDYESILRFYDVFYM 640
           + +   N         ++G FW+ +   LR Y    +
Sbjct: 287 DPEVRANLTERQ----EDGEFWMSFSDFLRHYSRLEI 319
>d1mdwa_ d.3.1.3 (A:) Calpain large subunit, catalytic domain (domain II) {Rat (Rattus norvegicus), M-type [TaxId: 10116]} Length = 323 Back     information, alignment and structure
>d2r9fa1 d.3.1.3 (A:33-354) Calpain large subunit, catalytic domain (domain II) {Rat (Rattus norvegicus), mu-type [TaxId: 10116]} Length = 322 Back     information, alignment and structure
>d2r9fa1 d.3.1.3 (A:33-354) Calpain large subunit, catalytic domain (domain II) {Rat (Rattus norvegicus), mu-type [TaxId: 10116]} Length = 322 Back     information, alignment and structure
>d1ziva1 d.3.1.3 (A:28-337) Calpain large subunit, catalytic domain (domain II) {Human (Homo sapiens), calpain 9 [TaxId: 9606]} Length = 310 Back     information, alignment and structure
>d1ziva1 d.3.1.3 (A:28-337) Calpain large subunit, catalytic domain (domain II) {Human (Homo sapiens), calpain 9 [TaxId: 9606]} Length = 310 Back     information, alignment and structure
>d1df0a2 b.14.1.1 (A:356-514) Calpain large subunit, middle domain (domain III) {Rat (Rattus norvegicus), M-type [TaxId: 10116]} Length = 159 Back     information, alignment and structure
>d1df0a2 b.14.1.1 (A:356-514) Calpain large subunit, middle domain (domain III) {Rat (Rattus norvegicus), M-type [TaxId: 10116]} Length = 159 Back     information, alignment and structure
>d1df0a2 b.14.1.1 (A:356-514) Calpain large subunit, middle domain (domain III) {Rat (Rattus norvegicus), M-type [TaxId: 10116]} Length = 159 Back     information, alignment and structure
>d1qxpa3 b.14.1.1 (A:356-514) Calpain large subunit, middle domain (domain III) {Rat (Rattus norvegicus), mu-type [TaxId: 10116]} Length = 159 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query1043
d1mdwa_323 Calpain large subunit, catalytic domain (domain II 100.0
d2r9fa1322 Calpain large subunit, catalytic domain (domain II 100.0
d1ziva1310 Calpain large subunit, catalytic domain (domain II 100.0
d1mdwa_323 Calpain large subunit, catalytic domain (domain II 100.0
d2r9fa1322 Calpain large subunit, catalytic domain (domain II 100.0
d1ziva1310 Calpain large subunit, catalytic domain (domain II 100.0
d1df0a2159 Calpain large subunit, middle domain (domain III) 99.9
d1qxpa3159 Calpain large subunit, middle domain (domain III) 99.9
d1df0a2159 Calpain large subunit, middle domain (domain III) 99.72
d1qxpa3159 Calpain large subunit, middle domain (domain III) 99.69
d1wfda_93 Hypothetical protein 1500032H18Rik {Mouse (Mus mus 91.81
d1wr0a177 Vacuolar sorting protein 4b (VPS4B, SKD1 protein) 91.35
>d1mdwa_ d.3.1.3 (A:) Calpain large subunit, catalytic domain (domain II) {Rat (Rattus norvegicus), M-type [TaxId: 10116]} Back     information, alignment and structure
class: Alpha and beta proteins (a+b)
fold: Cysteine proteinases
superfamily: Cysteine proteinases
family: Calpain large subunit, catalytic domain (domain II)
domain: Calpain large subunit, catalytic domain (domain II)
species: Rat (Rattus norvegicus), M-type [TaxId: 10116]

Probab=100.00  E-value=6.6e-57  Score=504.89  Aligned_cols=280  Identities=25%  Similarity=0.464  Sum_probs=224.0

Q ss_pred             hhhhcCCCCccCCCCCCC---CC------cccCCCCceeeCCccccCCCeEeeCCCCCcCCcccCCCCChHHHHHHHHHh
Q psy1431         335 AEKFQYAVPFTDKEGPLI---LS------PKQKRDFVAWVRPSEFCSEPKMVAGEFVDYFSIKQTIVSDCSFVASLAVSA  405 (1043)
Q Consensus       335 ~~~~~~~~~f~D~~~~~~---l~------~~q~~~~~~W~Rp~e~~~~p~~~~~~~~~~~dI~Qg~lgDC~~vaaL~~la  405 (1043)
                      ..|...+.+|+|++||+.   |.      ..++...+.|+||.||+.+|+++. +++++.||.||.+|||||||||++||
T Consensus        16 ~~c~~~~~~f~D~~Fpp~~~Sl~~~~~~~~~~~~~~~~W~Rp~ei~~~~~~~~-~~~~~~di~QG~lgDC~llsal~ala   94 (323)
T d1mdwa_          16 NECLEAGALFQDPSFPALPSSLGFKELGPYSSKTRGIEWKRPTEICADPQFII-GGATRTDICQGALGDSWLLAAIASLT   94 (323)
T ss_dssp             HHHHHHTCCCCCTTSCSSHHHHCSSTTSTTCGGGTTCEEECHHHHCSSCBSCS-SCSCGGGCBCCSSCCHHHHHHHHHHT
T ss_pred             HHHHHcCCceECcCCCCCcccccccccCccccccCCceEeCcHHHCCCCeEee-CCCCcccccCCCCCCeeHHHHHHHHH
Confidence            345566788999999875   21      123446789999999999999887 68999999999999999999999999


Q ss_pred             cccccccccceeEeeecCCCCCCCcccCCceEEEEEeecCceEEeeecccccccCCCceEEeecCCCCchhHHHHHHHhh
Q psy1431         406 LYERRFGKRLVTSIIYPRNRNKEPVYNPFGKYMVKLHLNGITRKVIIDDQLPMARFNQLLCSYSQNKNELWVSILEKAYM  485 (1043)
Q Consensus       406 ~~~~~~~~~ll~~~i~P~~~~~~p~~~~~G~Y~vrl~~nG~wr~VvIDD~lP~~~~g~~l~~~s~~~~e~W~~LlEKAya  485 (1043)
                      +++..     +.+++ +.++.  ...++.|+|+||||+||+|+.|+|||+||+. +|+++|+++.+.+|+|++|||||||
T Consensus        95 ~~~~~-----~~~~~-~~~~~--~~~~~~G~y~v~l~~~G~w~~V~VDd~lP~~-~g~~~f~~~~~~~e~W~~LlEKAyA  165 (323)
T d1mdwa_          95 LNEEI-----LARVV-PLDQS--FQENYAGIFHFQFWQYGEWVEVVVDDRLPTK-DGELLFVHSAEGSEFWSALLEKAYA  165 (323)
T ss_dssp             TCHHH-----HHHHS-CSSCC--SSTTCSSEEEEEEEETTEEEEEEEESCEEEE-TTEESSCBCSSTTBCHHHHHHHHHH
T ss_pred             hChhh-----hhccc-ccccc--cccCCCcEEEEEEEECCEEEEEEeCCccccc-CCceEEeecCCCchhHHHHHHHHHH
Confidence            98863     33433 43332  2347899999999999999999999999996 6899999999999999999999999


Q ss_pred             hhcCCCCC-CCCccc--cccccCCccccccccCCcccccCChhHHHHHHHHHHhcCCccccCccccccccccCcccc--c
Q psy1431         486 KVMGGYDF-PGSNST--LHALNGLDTGAARAIRPNDARILTQTSVFENLFTRLHSRAMFWLPWCKREICLRMKKRER--S  560 (1043)
Q Consensus       486 Kl~G~Y~~-~g~~~~--L~~LTG~ipe~~i~l~~~~~~~~~~~~lw~~l~~~~~~g~li~~~~~~~~~~l~~~~~~~--~  560 (1043)
                      |+||||+. .||++.  |++|||++++. +.++.      ..+++|+.|.+++++|.++   +|++........+..  .
T Consensus       166 Kl~GsY~~i~gg~~~~aL~~LTG~~~~~-~~l~~------~~~~l~~~l~~~~~~~~~~---~~~~~~~~~~~~~~~~~~  235 (323)
T d1mdwa_         166 KINGCYEALSGGATTEGFEDFTGGIAEW-YELRK------PPPNLFKIIQKALEKGSLL---GCSIDITSAADSEAVTYQ  235 (323)
T ss_dssp             HHTTSGGGGCC----CCSGGGSCSEEEE-EETTS------CCTTHHHHHHHHHHTTCEE---EEECCCSSGGGTTCBCTT
T ss_pred             HHcCChhhccCCCHHHHHHHhcCCceEE-EEhhh------cchHHHHHHHHHHhCCCeE---EEeccCCCccccchhhhc
Confidence            99999995 577766  99999999999 88874      2567999999999999875   332211101111111  1


Q ss_pred             c-ccCceeeEeec---c----ceEEEEeeCCCCcCccCCCCCCCCCCCCC---HHHHHHcCCCCCCCCCCCCceEEEecc
Q psy1431         561 R-VDTMQSSVSWS---Q----GLRLLQLKNPWSNVRWRGNYSELDRLHWT---PELKRALNFDPNSASMFDNGIFWIDYE  629 (1043)
Q Consensus       561 ~-v~~HaYaV~~v---~----~~rll~LrNPWg~~eW~G~wsd~s~~~W~---~~~~~~l~~~~~~~~~~~dG~FWm~~e  629 (1043)
                      + +++|||+|+++   +    +.|||+||||||+.+|+|+||+.+ .+|+   ++.+..+..      ..+||+|||+|+
T Consensus       236 GL~~~HaY~Vl~~~~v~~~~~~~rlv~LRNPWg~~ew~G~wsd~s-~~W~~~~~~~~~~~~~------~~ddG~FWM~~~  308 (323)
T d1mdwa_         236 KLVKGHAYSVTGAEEVESSGSLQKLIRIRNPWGQVEWTGKWNDNC-PSWNTVDPEVRANLTE------RQEDGEFWMSFS  308 (323)
T ss_dssp             SCBTTCCEEEEEEEEEEETTEEEEEEEEECTTSCCCCCSTTSTTC-GGGGGSCHHHHHHHCC------SCCSSEEEEEHH
T ss_pred             ccccCceEEEeeEEEEecCCCcEEEEEEECCCCCccccCCCCCCC-hhhcccCHHHHHhcCC------CCCCCEEEEEHH
Confidence            2 99999998765   2    269999999999999999999988 5897   566766653      468999999999


Q ss_pred             cccccccEEEEe
Q psy1431         630 SILRFYDVFYMN  641 (1043)
Q Consensus       630 df~~~F~~~~i~  641 (1043)
                      ||+++|++++||
T Consensus       309 df~~~F~~~~vC  320 (323)
T d1mdwa_         309 DFLRHYSRLEIC  320 (323)
T ss_dssp             HHHHHCCEEEEE
T ss_pred             HHHHhCCceEEE
Confidence            999999999998
>d2r9fa1 d.3.1.3 (A:33-354) Calpain large subunit, catalytic domain (domain II) {Rat (Rattus norvegicus), mu-type [TaxId: 10116]} Back     information, alignment and structure
>d1ziva1 d.3.1.3 (A:28-337) Calpain large subunit, catalytic domain (domain II) {Human (Homo sapiens), calpain 9 [TaxId: 9606]} Back     information, alignment and structure
>d1mdwa_ d.3.1.3 (A:) Calpain large subunit, catalytic domain (domain II) {Rat (Rattus norvegicus), M-type [TaxId: 10116]} Back     information, alignment and structure
>d2r9fa1 d.3.1.3 (A:33-354) Calpain large subunit, catalytic domain (domain II) {Rat (Rattus norvegicus), mu-type [TaxId: 10116]} Back     information, alignment and structure
>d1ziva1 d.3.1.3 (A:28-337) Calpain large subunit, catalytic domain (domain II) {Human (Homo sapiens), calpain 9 [TaxId: 9606]} Back     information, alignment and structure
>d1df0a2 b.14.1.1 (A:356-514) Calpain large subunit, middle domain (domain III) {Rat (Rattus norvegicus), M-type [TaxId: 10116]} Back     information, alignment and structure
>d1qxpa3 b.14.1.1 (A:356-514) Calpain large subunit, middle domain (domain III) {Rat (Rattus norvegicus), mu-type [TaxId: 10116]} Back     information, alignment and structure
>d1df0a2 b.14.1.1 (A:356-514) Calpain large subunit, middle domain (domain III) {Rat (Rattus norvegicus), M-type [TaxId: 10116]} Back     information, alignment and structure
>d1qxpa3 b.14.1.1 (A:356-514) Calpain large subunit, middle domain (domain III) {Rat (Rattus norvegicus), mu-type [TaxId: 10116]} Back     information, alignment and structure
>d1wfda_ a.7.14.1 (A:) Hypothetical protein 1500032H18Rik {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
>d1wr0a1 a.7.14.1 (A:5-81) Vacuolar sorting protein 4b (VPS4B, SKD1 protein) {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure