Psyllid ID: psy14320

---

Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250---
Protein Sequence
MDHEHCKYISPLSTRYASKEMQHNFSDMKKFTTWRQLWIYLAEAQQSGFRNNIYIDPKHNFTLEADRCTVVDSRLGVELERQDDVGKKRSRSEEPEDCRGEEKVEVVLGGAGVDGGGQVTPVVNENEGGEADESAYTEETEDLKQDEASVAYFSEPLGIDASKVKQRCGWLVFGWVHDRLGNCVLLAFLGPTQAVNSTTSTSSNMDHEHCKYISPLSTRYASKEMQHNFSDMKKFTTWRQLWIYLAEAQQVRD
Secondary Structure (PSIPRED)
ccccccccccccccccccHHHHHHccccHHHHHHHHHHHHHHHHHHHcccccccccccccHHHHHccccHHHHHHHHHHHHHHHccccccccccccccccccEEEEEEcccccccccccccccccccccccccccHHHHHHHcccccccEEEccccccccHHHHHHHHccEEEEEEccccccEEHHHHcccEEEEEccccccccccccccccccccccccccHHHHHHccccHHHHHHHHHHHHHHHHHcccc
Secondary Structure Prediction (SSPRO)
cccHHcccccccHHHcccHHHHHHcccHHHcHHHHHHHHHHHHHHHHcccccEEEcHHHHEEHHHccccEcHHHHHHHHHHHccccHHHccccccHHccccEEEEEEEccccccccccccEEEEccccccccccccccccHHccccccEEEEEcccccccHHHHHHcccEEEEEEEEccccccEEEEEEccccEEEccccccccccHHHHccccccHHHcccHHHHHHcccHHHcHHHHHHHHHHHHHHHccc
Coil and Loop (DISEMBL)
mdhehckyisplstrYASKEMQHNFSDMKKFTTWRQLWIYLAEAQQsgfrnniyidpkhnftleadrctvvdsrlgvelerqddvgkkrsrseepedcrgeeKVEVVLGgagvdgggqvtpvvneneggeadesaytEETEDlkqdeasvayfseplgidaskVKQRCGWLVFGWVHDRLGNCVLLAFlgptqavnsttstssnmdhehckyisplstrYASKEMQHNFSDMKKFTTWRQLWIYLAEAQQVRD
Flexible Loop (DISEMBL)
mdhehckyisplstryaSKEMQHNFSDMKKFTTWRQLWIYLAEAQQSGFRNNIYIDPKhnftleadrctvvdsrlgvelerqddvgkkrsrseepedcrgeekvEVVLGgagvdgggqvtpvVNENEGGEADESAYTEETEDLKQDEASVAYFSEPLGIDASKVKQRCGWLVFGWVHDRLGNCVLLAFLGPTQAVNSttstssnmdhehCKYISPLSTRYASKEMQHNFSDMKKFTTWRQLWIYLAEAQQVRD
Low Complexity Region (SEG)
MDHEHCKYISPLSTRYASKEMQHNFSDMKKFTTWRQLWIYLAEAQQSGFRNNIYIDPKHNFTLEADRCTVVDSRLGVELERQDDVGKKRSRSEEPEDCRGEEKvevvlggagvdgggqvTPVVNENEGGEADESAYTEETEDLKQDEASVAYFSEPLGIDASKVKQRCGWLVFGWVHDRLGNCVLLAFLGPTQAVNSTTSTSSNMDHEHCKYISPLSTRYASKEMQHNFSDMKKFTTWRQLWIYLAEAQQVRD
Disordered region (IsUnstruct)
************************FSDMKKFTTWRQLWIYLAEAQQSGFRNNIYIDPKHNFTLEADRCTVVDSRLGV****************************VVLGG***************************************VAYFSEPLGIDASKVKQRCGWLVFGWVHDRLGNCVLLAFLG*************************************NFSDMKKFTTWRQLWIYLAE******
Disordered Region (DISOPRED)
*****CK**SPLSTRYASKEMQHNFSDMKKFTTWRQLWIYLAEAQQSGFRNNIYIDPKHNFTLEADRCTVVDSRLGVELERQDDVGKKRSRSEEPEDCRGEEKVEVVLGGAGVDGGGQVTPVVN*********************DEASVAYFSEPLGIDASKVKQRCGWLVFGWVHDRLGNCVLLAFLGPTQA******************ISPLSTRYASKEMQHNFSDMKKFTTWRQLWIYLAEAQQV**
Disordered Region (DISEMBL)
MDHEHCKYISPLSTRYASKEMQHNFSDMKKFTTWRQLWIYLAEAQQSGFRNNIYIDPKHNFTLEADRCTVVDSRLGVELER********************EKVEVVLGGAGVDGGGQVTPVVNENEGGEADESAYTEETEDLKQDEASVAYFSEPLGIDASKVKQRCGWLVFGWVHDRLGNCVLLAFLGPTQA***********DHEHCKYISPLSTRYASKEMQHNFSDMKKFTTWRQLWIYLAEAQQVRD
Disordered Region (DISPRO)
*****CKYISPLSTRYASKEMQHNFSDMKKFTTWRQLWIYLAEAQQSGFRNNIYIDPKHNFTLEADRCTVVDSRLGVELERQDDVGKKRSRSEEPEDCRGEEKVEVVLGGAGVDGGGQVTPVVNENE********YTEETEDLKQDEASVAYFSEPLGIDASKVKQRCGWLVFGWVHDRLGNCVLLAFLGPTQAVNSTTSTSSNMDHEHCKYISPLSTRYASKEMQHNFSDMKKFTTWRQLWIYLAEAQQ***
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MDHEHCKYISPLSTRYASKEMQHNFSDMKKFTTWRQLWIYLAEAQQSGFRNNIYIDPKHNFTLEADRCTVVDSRLGVELERQDDVGKKRSRSEEPEDCRGEEKVEVVLGGAGVDGGGQVTPVVNENEGGEADESAYTEETEDLKQDEASVAYFSEPLGIDASKVKQRCGWLVFGWVHDRLGNCVLLAFLGPTQAVNSTTSTSSNMDHEHCKYISPLSTRYASKEMQHNFSDMKKFTTWRQLWIYLAEAQQVRD
Positional Conservation
no confident homologs detected

---

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	253	2.2.26 [Sep-21-2011]
P21265	485	Adenylosuccinate lyase OS	yes	N/A	0.162	0.084	0.634	6e-09
A3KN12	490	Adenylosuccinate lyase OS	yes	N/A	0.169	0.087	0.627	2e-08
P54822	484	Adenylosuccinate lyase OS	yes	N/A	0.158	0.082	0.65	3e-08
P30566	484	Adenylosuccinate lyase OS	no	N/A	0.158	0.082	0.65	5e-08
Q8HXY5	484	Adenylosuccinate lyase OS	N/A	N/A	0.158	0.082	0.65	5e-08
Q05911	482	Adenylosuccinate lyase OS	yes	N/A	0.154	0.080	0.564	2e-06
O60105	482	Adenylosuccinate lyase OS	yes	N/A	0.169	0.089	0.488	2e-05

>sp|P21265|PUR8_CHICK Adenylosuccinate lyase OS=Gallus gallus GN=ADSL PE=2 SV=2

 Score = 61.6 bits (148), Expect = 6e-09,   Method: Compositional matrix adjust.
 Identities = 26/41 (63%), Positives = 34/41 (82%)

Query: 7  KYISPLSTRYASKEMQHNFSDMKKFTTWRQLWIYLAEAQQS 47
          +Y SPL +RYAS EM  NFS+ KKF TWR+LW+YLA+A++S
Sbjct: 13 RYRSPLVSRYASAEMGFNFSERKKFGTWRRLWLYLAQAEKS 53

Gallus gallus (taxid: 9031)
EC: 4EC: .EC: 3EC: .EC: 2EC: .EC: 2

>sp|A3KN12|PUR8_BOVIN Adenylosuccinate lyase OS=Bos taurus GN=ADSL PE=2 SV=1

 Score = 59.3 bits (142), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 27/43 (62%), Positives = 33/43 (76%)

Query: 5  HCKYISPLSTRYASKEMQHNFSDMKKFTTWRQLWIYLAEAQQS 47
          H  Y SPL++RYAS EM   FSD  KF TWRQLW++LAEA+Q+
Sbjct: 16 HDSYRSPLASRYASPEMCFLFSDKYKFRTWRQLWLWLAEAEQT 58

Bos taurus (taxid: 9913)

EC: 4

EC: .

EC: 3

EC: .

EC: 2

EC: .

EC: 2

>sp|P54822|PUR8_MOUSE Adenylosuccinate lyase OS=Mus musculus GN=Adsl PE=2 SV=2

 Score = 58.9 bits (141), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 26/40 (65%), Positives = 32/40 (80%)

Query: 8  YISPLSTRYASKEMQHNFSDMKKFTTWRQLWIYLAEAQQS 47
          Y SPL+ RYAS+EM   FSD  KF TWRQLW++LAEA+Q+
Sbjct: 13 YRSPLAARYASREMCFLFSDRYKFQTWRQLWLWLAEAEQT 52

Mus musculus (taxid: 10090)

EC: 4

EC: .

EC: 3

EC: .

EC: 2

EC: .

EC: 2

>sp|P30566|PUR8_HUMAN Adenylosuccinate lyase OS=Homo sapiens GN=ADSL PE=1 SV=2

 Score = 58.5 bits (140), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 26/40 (65%), Positives = 32/40 (80%)

Query: 8  YISPLSTRYASKEMQHNFSDMKKFTTWRQLWIYLAEAQQS 47
          Y SPL++RYAS EM   FSD  KF TWRQLW++LAEA+Q+
Sbjct: 13 YRSPLASRYASPEMCFVFSDRYKFRTWRQLWLWLAEAEQT 52

Homo sapiens (taxid: 9606)

EC: 4

EC: .

EC: 3

EC: .

EC: 2

EC: .

EC: 2

>sp|Q8HXY5|PUR8_MACFA Adenylosuccinate lyase OS=Macaca fascicularis GN=ADSL PE=2 SV=1

 Score = 58.5 bits (140), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 26/40 (65%), Positives = 32/40 (80%)

Query: 8  YISPLSTRYASKEMQHNFSDMKKFTTWRQLWIYLAEAQQS 47
          Y SPL++RYAS EM   FSD  KF TWRQLW++LAEA+Q+
Sbjct: 13 YRSPLASRYASPEMCFVFSDRYKFRTWRQLWLWLAEAEQT 52

Macaca fascicularis (taxid: 9541)

EC: 4

EC: .

EC: 3

EC: .

EC: 2

EC: .

EC: 2

>sp|Q05911|PUR8_YEAST Adenylosuccinate lyase OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=ADE13 PE=1 SV=1

 Score = 52.8 bits (125), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 22/39 (56%), Positives = 30/39 (76%)

Query: 8  YISPLSTRYASKEMQHNFSDMKKFTTWRQLWIYLAEAQQ 46
          Y +PLS+RYASKEM   FS   +F+TWR+LW+ LA A++
Sbjct: 7  YTTPLSSRYASKEMSATFSLRNRFSTWRKLWLNLAIAEK 45

Saccharomyces cerevisiae (strain ATCC 204508 / S288c) (taxid: 559292)

EC: 4

EC: .

EC: 3

EC: .

EC: 2

EC: .

EC: 2

>sp|O60105|PUR8_SCHPO Adenylosuccinate lyase OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=ade8 PE=3 SV=1

 Score = 49.3 bits (116), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 21/43 (48%), Positives = 29/43 (67%)

Query: 4  EHCKYISPLSTRYASKEMQHNFSDMKKFTTWRQLWIYLAEAQQ 46
          ++  Y +PL+ RYAS EM H FS   +  TWRQLW+ LA A++
Sbjct: 3  DYGSYSTPLTARYASAEMSHLFSREMRINTWRQLWLNLAIAEK 45

Schizosaccharomyces pombe (strain 972 / ATCC 24843) (taxid: 284812)

EC: 4

EC: .

EC: 3

EC: .

EC: 2

EC: .

EC: 2

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	253
307208117	424	Adenylosuccinate lyase [Harpegnathos sal	0.201	0.120	0.647	9e-12
322784013	409	hypothetical protein SINV_03404 [Solenop	0.213	0.132	0.611	3e-11
242003446	485	adenylosuccinate lyase, putative [Pedicu	0.181	0.094	0.673	3e-11
307171861	627	Probable RNA-binding protein 46 [Campono	0.181	0.073	0.673	5e-11
332018717	550	Putative RNA-binding protein 46 [Acromyr	0.185	0.085	0.659	5e-11
91088817	487	PREDICTED: similar to GA17542-PA [Tribol	0.201	0.104	0.627	6e-11
183979262	492	similar to CG3590-PA [Papilio xuthus]	0.169	0.087	0.720	8e-11
260801381	480	hypothetical protein BRAFLDRAFT_275316 [	0.181	0.095	0.673	1e-10
440918720	482	adenylosuccinate lyase [Danio rerio]	0.173	0.091	0.727	1e-10
48734910	482	Adenylosuccinate lyase [Danio rerio]	0.173	0.091	0.727	1e-10

>gi|307208117|gb|EFN85621.1| Adenylosuccinate lyase [Harpegnathos saltator]

 Score = 76.6 bits (187), Expect = 9e-12,   Method: Compositional matrix adjust.
 Identities = 33/51 (64%), Positives = 42/51 (82%)

Query: 203 SNMDHEHCKYISPLSTRYASKEMQHNFSDMKKFTTWRQLWIYLAEAQQVRD 253
           S + +E+C Y SPLSTRYASKEM++NFSD  KF+TWR+LWIYLA+A+   D
Sbjct: 4   SKVQNEYCDYRSPLSTRYASKEMRYNFSDQNKFSTWRKLWIYLAKAEMYED 54

Source: Harpegnathos saltator

Species: Harpegnathos saltator

Genus: Harpegnathos

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|322784013|gb|EFZ11153.1| hypothetical protein SINV_03404 [Solenopsis invicta]

 Score = 75.1 bits (183), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 33/54 (61%), Positives = 42/54 (77%)

Query: 200 STSSNMDHEHCKYISPLSTRYASKEMQHNFSDMKKFTTWRQLWIYLAEAQQVRD 253
           S S    +++C Y SPLSTRYASKEM++NFSD  KF+TWR+LWIYLA+A+   D
Sbjct: 2   SVSKVPSNDYCDYRSPLSTRYASKEMRYNFSDQNKFSTWRKLWIYLAKAEMYED 55

Source: Solenopsis invicta

Species: Solenopsis invicta

Genus: Solenopsis

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|242003446|ref|XP_002422735.1| adenylosuccinate lyase, putative [Pediculus humanus corporis] gi|212505568|gb|EEB09997.1| adenylosuccinate lyase, putative [Pediculus humanus corporis]

 Score = 75.1 bits (183), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 31/46 (67%), Positives = 40/46 (86%)

Query: 2  DHEHCKYISPLSTRYASKEMQHNFSDMKKFTTWRQLWIYLAEAQQS 47
          ++E+C Y S LSTRYAS EM++NFSDMKKF+TWR+LW+YLA  Q+S
Sbjct: 8  NNEYCNYRSALSTRYASTEMKYNFSDMKKFSTWRKLWVYLATGQKS 53

Source: Pediculus humanus corporis

Species: Pediculus humanus

Genus: Pediculus

Family: Pediculidae

Order: Phthiraptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|307171861|gb|EFN63516.1| Probable RNA-binding protein 46 [Camponotus floridanus]

 Score = 73.9 bits (180), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 31/46 (67%), Positives = 39/46 (84%)

Query: 208 EHCKYISPLSTRYASKEMQHNFSDMKKFTTWRQLWIYLAEAQQVRD 253
           ++C Y SPLSTRYASKEM++NFSD  KF+TWR+LWIYLA+A+   D
Sbjct: 233 DYCDYRSPLSTRYASKEMRYNFSDQNKFSTWRKLWIYLAKAEMYED 278

Source: Camponotus floridanus

Species: Camponotus floridanus

Genus: Camponotus

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|332018717|gb|EGI59289.1| Putative RNA-binding protein 46 [Acromyrmex echinatior]

 Score = 73.9 bits (180), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 31/47 (65%), Positives = 40/47 (85%)

Query: 207 HEHCKYISPLSTRYASKEMQHNFSDMKKFTTWRQLWIYLAEAQQVRD 253
           +++C Y SPLSTRYASKEM++NFSD  KF+TWR+LWIYLA+A+   D
Sbjct: 153 NDYCDYRSPLSTRYASKEMRYNFSDQNKFSTWRKLWIYLAKAEMYED 199

Source: Acromyrmex echinatior

Species: Acromyrmex echinatior

Genus: Acromyrmex

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|91088817|ref|XP_969793.1| PREDICTED: similar to GA17542-PA [Tribolium castaneum] gi|270012328|gb|EFA08776.1| hypothetical protein TcasGA2_TC006466 [Tribolium castaneum]

 Score = 73.9 bits (180), Expect = 6e-11,   Method: Compositional matrix adjust.
 Identities = 32/51 (62%), Positives = 43/51 (84%)

Query: 200 STSSNMDHEHCKYISPLSTRYASKEMQHNFSDMKKFTTWRQLWIYLAEAQQ 250
           S + + ++ +C Y SPLSTRYASKEMQ+NFSD KKF+TWR+LWI LA+A++
Sbjct: 2   SETIDYNNPYCNYRSPLSTRYASKEMQYNFSDQKKFSTWRRLWINLAKAEK 52

Source: Tribolium castaneum

Species: Tribolium castaneum

Genus: Tribolium

Family: Tenebrionidae

Order: Coleoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|183979262|dbj|BAG30792.1| similar to CG3590-PA [Papilio xuthus]

 Score = 73.6 bits (179), Expect = 8e-11,   Method: Compositional matrix adjust.
 Identities = 31/43 (72%), Positives = 38/43 (88%)

Query: 4  EHCKYISPLSTRYASKEMQHNFSDMKKFTTWRQLWIYLAEAQQ 46
          E C Y SPLSTRYASKEMQ+NFSD KKF+TWR+LWIY A++++
Sbjct: 14 EFCNYRSPLSTRYASKEMQYNFSDQKKFSTWRKLWIYPAKSEK 56

Source: Papilio xuthus

Species: Papilio xuthus

Genus: Papilio

Family: Papilionidae

Order: Lepidoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|260801381|ref|XP_002595574.1| hypothetical protein BRAFLDRAFT_275316 [Branchiostoma floridae] gi|229280821|gb|EEN51586.1| hypothetical protein BRAFLDRAFT_275316 [Branchiostoma floridae]

 Score = 72.8 bits (177), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 31/46 (67%), Positives = 41/46 (89%)

Query: 2  DHEHCKYISPLSTRYASKEMQHNFSDMKKFTTWRQLWIYLAEAQQS 47
          D E CKY SPL++RYAS+EM + FSDMKKFTTWR+LW++LA+AQ++
Sbjct: 3  DPELCKYRSPLTSRYASEEMAYVFSDMKKFTTWRKLWLWLAKAQKT 48

Source: Branchiostoma floridae

Species: Branchiostoma floridae

Genus: Branchiostoma

Family: Branchiostomidae

Phylum: Chordata

Superkingdom: Eukaryota

>gi|440918720|ref|NP_956193.2| adenylosuccinate lyase [Danio rerio]

 Score = 72.8 bits (177), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 32/44 (72%), Positives = 38/44 (86%)

Query: 4  EHCKYISPLSTRYASKEMQHNFSDMKKFTTWRQLWIYLAEAQQS 47
          E  KY SPL +RYASKEM +NFSD KKFTTWR+LWIYLA+A++S
Sbjct: 7  EFLKYRSPLVSRYASKEMAYNFSDRKKFTTWRKLWIYLAKAEKS 50

Source: Danio rerio

Species: Danio rerio

Genus: Danio

Family: Cyprinidae

Order: Cypriniformes

Class: Actinopterygii

Phylum: Chordata

Superkingdom: Eukaryota

>gi|48734910|gb|AAH71343.1| Adenylosuccinate lyase [Danio rerio]

 Score = 72.4 bits (176), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 32/44 (72%), Positives = 38/44 (86%)

Query: 4  EHCKYISPLSTRYASKEMQHNFSDMKKFTTWRQLWIYLAEAQQS 47
          E  KY SPL +RYASKEM +NFSD KKFTTWR+LWIYLA+A++S
Sbjct: 7  EFLKYRSPLVSRYASKEMAYNFSDRKKFTTWRKLWIYLAKAEKS 50

Source: Danio rerio

Species: Danio rerio

Genus: Danio

Family: Cyprinidae

Order: Cypriniformes

Class: Actinopterygii

Phylum: Chordata

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	253
ZFIN|ZDB-GENE-030131-6363	482	adsl "adenylosuccinate lyase"	0.173	0.091	0.727	9.8e-12
FB|FBgn0038467	481	CG3590 [Drosophila melanogaste	0.150	0.079	0.710	3.5e-08
UNIPROTKB|D2KPI8	484	ADSL "Adenylosuccinate lyase"	0.181	0.095	0.617	4.7e-08
UNIPROTKB|F1NDB3	485	ADSL "Adenylosuccinate lyase"	0.162	0.084	0.634	1.4e-07
UNIPROTKB|P21265	485	ADSL "Adenylosuccinate lyase"	0.162	0.084	0.634	1.4e-07
UNIPROTKB|E2RGK2	490	TNRC6B "Uncharacterized protei	0.169	0.087	0.627	2e-07
UNIPROTKB|A3KN12	490	ADSL "Adenylosuccinate lyase"	0.169	0.087	0.627	3.4e-07
UNIPROTKB|F1MHP6	490	ADSL "Adenylosuccinate lyase"	0.169	0.087	0.627	3.4e-07
MGI|MGI:103202	484	Adsl "adenylosuccinate lyase"	0.158	0.082	0.65	7.6e-07
UNIPROTKB|P30566	484	ADSL "Adenylosuccinate lyase"	0.158	0.082	0.65	1.3e-06

ZFIN|ZDB-GENE-030131-6363 adsl "adenylosuccinate lyase" [Danio rerio (taxid:7955)]

 Score = 172 (65.6 bits), Expect = 9.8e-12, P = 9.8e-12
 Identities = 32/44 (72%), Positives = 38/44 (86%)

Query:     4 EHCKYISPLSTRYASKEMQHNFSDMKKFTTWRQLWIYLAEAQQS 47
             E  KY SPL +RYASKEM +NFSD KKFTTWR+LWIYLA+A++S
Sbjct:     7 EFLKYRSPLVSRYASKEMAYNFSDRKKFTTWRKLWIYLAKAEKS 50

GO:0004018 "N6-(1,2-dicarboxyethyl)AMP AMP-lyase (fumarate-forming) activity" evidence=IEA

GO:0003824 "catalytic activity" evidence=IEA

GO:0009152 "purine ribonucleotide biosynthetic process" evidence=IEA

GO:0005737 "cytoplasm" evidence=ISS

GO:0016829 "lyase activity" evidence=IEA

FB|FBgn0038467 CG3590 [Drosophila melanogaster (taxid:7227)]

 Score = 149 (57.5 bits), Expect = 3.5e-08, P = 3.5e-08
 Identities = 27/38 (71%), Positives = 33/38 (86%)

Query:     8 YISPLSTRYASKEMQHNFSDMKKFTTWRQLWIYLAEAQ 45
             Y SPLSTRYASKEMQ  FSD  KF+TWR+LW++LA+A+
Sbjct:     8 YKSPLSTRYASKEMQFLFSDQNKFSTWRRLWVWLAKAE 45

GO:0009152 "purine ribonucleotide biosynthetic process" evidence=IEA

GO:0006163 "purine nucleotide metabolic process" evidence=ISS

GO:0005829 "cytosol" evidence=ISS

GO:0004018 "N6-(1,2-dicarboxyethyl)AMP AMP-lyase (fumarate-forming) activity" evidence=ISS

UNIPROTKB|D2KPI8 ADSL "Adenylosuccinate lyase" [Sus scrofa (taxid:9823)]

 Score = 148 (57.2 bits), Expect = 4.7e-08, P = 4.7e-08
 Identities = 29/47 (61%), Positives = 36/47 (76%)

Query:     2 DHE-HCKYISPLSTRYASKEMQHNFSDMKKFTTWRQLWIYLAEAQQS 47
             DH+ H  Y SPL++RYAS EM   FSD  KF TWRQLW++LAEA+Q+
Sbjct:     6 DHDGHDSYRSPLASRYASPEMCFVFSDRYKFRTWRQLWLWLAEAEQT 52

GO:0051262 "protein tetramerization" evidence=IEA

GO:0006167 "AMP biosynthetic process" evidence=IEA

GO:0005739 "mitochondrion" evidence=IEA

GO:0004018 "N6-(1,2-dicarboxyethyl)AMP AMP-lyase (fumarate-forming) activity" evidence=IEA

UNIPROTKB|F1NDB3 ADSL "Adenylosuccinate lyase" [Gallus gallus (taxid:9031)]

 Score = 144 (55.7 bits), Expect = 1.4e-07, P = 1.4e-07
 Identities = 26/41 (63%), Positives = 34/41 (82%)

Query:     7 KYISPLSTRYASKEMQHNFSDMKKFTTWRQLWIYLAEAQQS 47
             +Y SPL +RYAS EM  NFS+ KKF TWR+LW+YLA+A++S
Sbjct:    13 RYRSPLVSRYASAEMGFNFSERKKFGTWRRLWLYLAQAEKS 53

GO:0004018 "N6-(1,2-dicarboxyethyl)AMP AMP-lyase (fumarate-forming) activity" evidence=IEA

GO:0005739 "mitochondrion" evidence=IEA

GO:0006167 "AMP biosynthetic process" evidence=IEA

GO:0051262 "protein tetramerization" evidence=IEA

UNIPROTKB|P21265 ADSL "Adenylosuccinate lyase" [Gallus gallus (taxid:9031)]

 Score = 144 (55.7 bits), Expect = 1.4e-07, P = 1.4e-07
 Identities = 26/41 (63%), Positives = 34/41 (82%)

Query:     7 KYISPLSTRYASKEMQHNFSDMKKFTTWRQLWIYLAEAQQS 47
             +Y SPL +RYAS EM  NFS+ KKF TWR+LW+YLA+A++S
Sbjct:    13 RYRSPLVSRYASAEMGFNFSERKKFGTWRRLWLYLAQAEKS 53

GO:0004018 "N6-(1,2-dicarboxyethyl)AMP AMP-lyase (fumarate-forming) activity" evidence=IEA

GO:0070626 "(S)-2-(5-amino-1-(5-phospho-D-ribosyl)imidazole-4-carboxamido)succ inate AMP-lyase (fumarate-forming) activity" evidence=IEA

GO:0006189 "'de novo' IMP biosynthetic process" evidence=IEA;TAS

GO:0044208 "'de novo' AMP biosynthetic process" evidence=IEA

GO:0005829 "cytosol" evidence=TAS

GO:0006144 "purine nucleobase metabolic process" evidence=TAS

GO:0006167 "AMP biosynthetic process" evidence=TAS

GO:0044281 "small molecule metabolic process" evidence=TAS

GO:0055086 "nucleobase-containing small molecule metabolic process" evidence=TAS

UNIPROTKB|E2RGK2 TNRC6B "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 143 (55.4 bits), Expect = 2.0e-07, P = 2.0e-07
 Identities = 27/43 (62%), Positives = 33/43 (76%)

Query:     5 HCKYISPLSTRYASKEMQHNFSDMKKFTTWRQLWIYLAEAQQS 47
             H  Y SPL++RYAS EM   FSD  KF TWRQLW++LAEA+Q+
Sbjct:    16 HDSYCSPLASRYASPEMCFMFSDRCKFRTWRQLWLWLAEAEQA 58

GO:0009152 "purine ribonucleotide biosynthetic process" evidence=IEA

GO:0004018 "N6-(1,2-dicarboxyethyl)AMP AMP-lyase (fumarate-forming) activity" evidence=IEA

UNIPROTKB|A3KN12 ADSL "Adenylosuccinate lyase" [Bos taurus (taxid:9913)]

 Score = 141 (54.7 bits), Expect = 3.4e-07, P = 3.4e-07
 Identities = 27/43 (62%), Positives = 33/43 (76%)

Query:     5 HCKYISPLSTRYASKEMQHNFSDMKKFTTWRQLWIYLAEAQQS 47
             H  Y SPL++RYAS EM   FSD  KF TWRQLW++LAEA+Q+
Sbjct:    16 HDSYRSPLASRYASPEMCFLFSDKYKFRTWRQLWLWLAEAEQT 58

GO:0044208 "'de novo' AMP biosynthetic process" evidence=IEA

GO:0006189 "'de novo' IMP biosynthetic process" evidence=IEA

GO:0070626 "(S)-2-(5-amino-1-(5-phospho-D-ribosyl)imidazole-4-carboxamido)succ inate AMP-lyase (fumarate-forming) activity" evidence=IEA

GO:0004018 "N6-(1,2-dicarboxyethyl)AMP AMP-lyase (fumarate-forming) activity" evidence=IEA

UNIPROTKB|F1MHP6 ADSL "Adenylosuccinate lyase" [Bos taurus (taxid:9913)]

 Score = 141 (54.7 bits), Expect = 3.4e-07, P = 3.4e-07
 Identities = 27/43 (62%), Positives = 33/43 (76%)

Query:     5 HCKYISPLSTRYASKEMQHNFSDMKKFTTWRQLWIYLAEAQQS 47
             H  Y SPL++RYAS EM   FSD  KF TWRQLW++LAEA+Q+
Sbjct:    16 HDSYRSPLASRYASPEMCFLFSDKYKFRTWRQLWLWLAEAEQT 58

GO:0009152 "purine ribonucleotide biosynthetic process" evidence=IEA

GO:0004018 "N6-(1,2-dicarboxyethyl)AMP AMP-lyase (fumarate-forming) activity" evidence=IEA

MGI|MGI:103202 Adsl "adenylosuccinate lyase" [Mus musculus (taxid:10090)]

 Score = 138 (53.6 bits), Expect = 7.6e-07, P = 7.6e-07
 Identities = 26/40 (65%), Positives = 32/40 (80%)

Query:     8 YISPLSTRYASKEMQHNFSDMKKFTTWRQLWIYLAEAQQS 47
             Y SPL+ RYAS+EM   FSD  KF TWRQLW++LAEA+Q+
Sbjct:    13 YRSPLAARYASREMCFLFSDRYKFQTWRQLWLWLAEAEQT 52

GO:0003824 "catalytic activity" evidence=IEA

GO:0004018 "N6-(1,2-dicarboxyethyl)AMP AMP-lyase (fumarate-forming) activity" evidence=ISO;ISA

GO:0005739 "mitochondrion" evidence=IDA

GO:0005829 "cytosol" evidence=ISO

GO:0006163 "purine nucleotide metabolic process" evidence=ISO

GO:0006164 "purine nucleotide biosynthetic process" evidence=IEA

GO:0006167 "AMP biosynthetic process" evidence=ISO;ISA

GO:0007584 "response to nutrient" evidence=ISO

GO:0009060 "aerobic respiration" evidence=ISO

GO:0009152 "purine ribonucleotide biosynthetic process" evidence=IEA

GO:0009156 "ribonucleoside monophosphate biosynthetic process" evidence=ISO

GO:0016829 "lyase activity" evidence=IEA

GO:0051262 "protein tetramerization" evidence=ISO

GO:0070626 "(S)-2-(5-amino-1-(5-phospho-D-ribosyl)imidazole-4-carboxamido)succ inate AMP-lyase (fumarate-forming) activity" evidence=ISO

UNIPROTKB|P30566 ADSL "Adenylosuccinate lyase" [Homo sapiens (taxid:9606)]

 Score = 136 (52.9 bits), Expect = 1.3e-06, P = 1.3e-06
 Identities = 26/40 (65%), Positives = 32/40 (80%)

Query:     8 YISPLSTRYASKEMQHNFSDMKKFTTWRQLWIYLAEAQQS 47
             Y SPL++RYAS EM   FSD  KF TWRQLW++LAEA+Q+
Sbjct:    13 YRSPLASRYASPEMCFVFSDRYKFRTWRQLWLWLAEAEQT 52

GO:0070626 "(S)-2-(5-amino-1-(5-phospho-D-ribosyl)imidazole-4-carboxamido)succ inate AMP-lyase (fumarate-forming) activity" evidence=IEA

GO:0001666 "response to hypoxia" evidence=IEA

GO:0005739 "mitochondrion" evidence=IEA

GO:0007584 "response to nutrient" evidence=IEA

GO:0009060 "aerobic respiration" evidence=IEA

GO:0014850 "response to muscle activity" evidence=IEA

GO:0042594 "response to starvation" evidence=IEA

GO:0006189 "'de novo' IMP biosynthetic process" evidence=IEA

GO:0044208 "'de novo' AMP biosynthetic process" evidence=IEA

GO:0004018 "N6-(1,2-dicarboxyethyl)AMP AMP-lyase (fumarate-forming) activity" evidence=IDA;TAS

GO:0006167 "AMP biosynthetic process" evidence=IDA

GO:0006164 "purine nucleotide biosynthetic process" evidence=IC

GO:0051262 "protein tetramerization" evidence=IDA

GO:0005829 "cytosol" evidence=TAS

GO:0006144 "purine nucleobase metabolic process" evidence=TAS

GO:0009168 "purine ribonucleoside monophosphate biosynthetic process" evidence=TAS

GO:0044281 "small molecule metabolic process" evidence=TAS

GO:0055086 "nucleobase-containing small molecule metabolic process" evidence=TAS

GO:0005737 "cytoplasm" evidence=IDA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database

ID	Length	Definition	E-value
Query	253
cd03302	436	cd03302, Adenylsuccinate_lyase_2, Adenylsuccinate	9e-16
cd03302	436	cd03302, Adenylsuccinate_lyase_2, Adenylsuccinate	1e-15
COG0015	438	COG0015, PurB, Adenylosuccinate lyase [Nucleotide	3e-05
COG0015	438	COG0015, PurB, Adenylosuccinate lyase [Nucleotide	3e-05
TIGR00928	435	TIGR00928, purB, adenylosuccinate lyase	1e-04
TIGR00928	435	TIGR00928, purB, adenylosuccinate lyase	1e-04
cd01595	381	cd01595, Adenylsuccinate_lyase_like, Adenylsuccina	0.003
cd01595	381	cd01595, Adenylsuccinate_lyase_like, Adenylsuccina	0.003

>gnl|CDD|176471 cd03302, Adenylsuccinate_lyase_2, Adenylsuccinate lyase (ASL)_subgroup 2

 Score = 75.8 bits (187), Expect = 9e-16
 Identities = 22/36 (61%), Positives = 31/36 (86%)

Query: 12 LSTRYASKEMQHNFSDMKKFTTWRQLWIYLAEAQQS 47
          L++RYASKEM + FS  KKF+TWR+LW++LAEA++ 
Sbjct: 1  LASRYASKEMVYIFSPRKKFSTWRKLWLWLAEAEKE 36

This subgroup contains mainly eukaryotic proteins similar to ASL, a member of the Lyase class I family. Members of this family for the most part catalyze similar beta-elimination reactions in which a C-N or C-O bond is cleaved with the release of fumarate as one of the products. These proteins are active as tetramers. The four active sites of the homotetrameric enzyme are each formed by residues from three different subunits. ASL catalyzes two steps in the de novo purine biosynthesis: the conversion of 5-aminoimidazole-(N-succinylocarboxamide) ribotide (SAICAR) into 5-aminoimidazole-4-carboxamide ribotide (AICAR) and, the conversion of adenylsuccinate (SAMP) into adenosine monophosphate (AMP). ASL deficiency has been linked to several pathologies including psychomotor retardation with autistic features, epilepsy and muscle wasting. Length = 436

>gnl|CDD|176471 cd03302, Adenylsuccinate_lyase_2, Adenylsuccinate lyase (ASL)_subgroup 2

 Score = 75.4 bits (186), Expect = 1e-15
 Identities = 22/35 (62%), Positives = 31/35 (88%)

Query: 216 LSTRYASKEMQHNFSDMKKFTTWRQLWIYLAEAQQ 250
           L++RYASKEM + FS  KKF+TWR+LW++LAEA++
Sbjct: 1   LASRYASKEMVYIFSPRKKFSTWRKLWLWLAEAEK 35

This subgroup contains mainly eukaryotic proteins similar to ASL, a member of the Lyase class I family. Members of this family for the most part catalyze similar beta-elimination reactions in which a C-N or C-O bond is cleaved with the release of fumarate as one of the products. These proteins are active as tetramers. The four active sites of the homotetrameric enzyme are each formed by residues from three different subunits. ASL catalyzes two steps in the de novo purine biosynthesis: the conversion of 5-aminoimidazole-(N-succinylocarboxamide) ribotide (SAICAR) into 5-aminoimidazole-4-carboxamide ribotide (AICAR) and, the conversion of adenylsuccinate (SAMP) into adenosine monophosphate (AMP). ASL deficiency has been linked to several pathologies including psychomotor retardation with autistic features, epilepsy and muscle wasting. Length = 436

>gnl|CDD|223094 COG0015, PurB, Adenylosuccinate lyase [Nucleotide transport and metabolism]

 Score = 44.1 bits (105), Expect = 3e-05
 Identities = 14/34 (41%), Positives = 19/34 (55%)

Query: 12 LSTRYASKEMQHNFSDMKKFTTWRQLWIYLAEAQ 45
          L  RY+S EM+  FS+  K   W ++   LA AQ
Sbjct: 1  LDGRYSSPEMRAIFSEEAKLRAWLKVEAALARAQ 34

Length = 438

>gnl|CDD|223094 COG0015, PurB, Adenylosuccinate lyase [Nucleotide transport and metabolism]

 Score = 44.1 bits (105), Expect = 3e-05
 Identities = 14/34 (41%), Positives = 19/34 (55%)

Query: 216 LSTRYASKEMQHNFSDMKKFTTWRQLWIYLAEAQ 249
           L  RY+S EM+  FS+  K   W ++   LA AQ
Sbjct: 1   LDGRYSSPEMRAIFSEEAKLRAWLKVEAALARAQ 34

Length = 438

>gnl|CDD|233192 TIGR00928, purB, adenylosuccinate lyase

 Score = 42.3 bits (100), Expect = 1e-04
 Identities = 12/34 (35%), Positives = 18/34 (52%)

Query: 12 LSTRYASKEMQHNFSDMKKFTTWRQLWIYLAEAQ 45
          L  RY + EM+  +S+  KF TW  + + L  A 
Sbjct: 1  LDERYGTPEMRAIWSEENKFKTWLDVEVALLRAL 34

This family consists of adenylosuccinate lyase, the enzyme that catalyzes step 8 in the purine biosynthesis pathway for de novo synthesis of IMP and also the final reaction in the two-step sequence from IMP to AMP [Purines, pyrimidines, nucleosides, and nucleotides, Purine ribonucleotide biosynthesis]. Length = 435

>gnl|CDD|233192 TIGR00928, purB, adenylosuccinate lyase

 Score = 42.3 bits (100), Expect = 1e-04
 Identities = 12/34 (35%), Positives = 18/34 (52%)

Query: 216 LSTRYASKEMQHNFSDMKKFTTWRQLWIYLAEAQ 249
           L  RY + EM+  +S+  KF TW  + + L  A 
Sbjct: 1   LDERYGTPEMRAIWSEENKFKTWLDVEVALLRAL 34

This family consists of adenylosuccinate lyase, the enzyme that catalyzes step 8 in the purine biosynthesis pathway for de novo synthesis of IMP and also the final reaction in the two-step sequence from IMP to AMP [Purines, pyrimidines, nucleosides, and nucleotides, Purine ribonucleotide biosynthesis]. Length = 435

>gnl|CDD|176467 cd01595, Adenylsuccinate_lyase_like, Adenylsuccinate lyase (ASL)_like

 Score = 37.9 bits (89), Expect = 0.003
 Identities = 11/25 (44%), Positives = 14/25 (56%)

Query: 21 MQHNFSDMKKFTTWRQLWIYLAEAQ 45
          M+  FS+  K  TW  +   LAEAQ
Sbjct: 1  MRAIFSEENKLRTWLDVEAALAEAQ 25

This group contains ASL, prokaryotic-type 3-carboxy-cis,cis-muconate cycloisomerase (pCMLE), and related proteins. These proteins are members of the Lyase class I family. Members of this family for the most part catalyze similar beta-elimination reactions in which a C-N or C-O bond is cleaved with the release of fumarate as one of the products. These proteins are active as tetramers. The four active sites of the homotetrameric enzyme are each formed by residues from three different subunits. ASL catalyzes two steps in the de novo purine biosynthesis: the conversion of 5-aminoimidazole-(N-succinylocarboxamide) ribotide (SAICAR) into 5-aminoimidazole-4-carboxamide ribotide (AICAR) and; the conversion of adenylsuccinate (SAMP) into adenosine monophosphate (AMP). pCMLE catalyzes the cyclization of 3-carboxy-cis,cis-muconate (3CM) to 4-carboxy-muconolactone, in the beta-ketoadipate pathway. ASL deficiency has been linked to several pathologies including psychomotor retardation with autistic features, epilepsy and muscle wasting. Length = 381

>gnl|CDD|176467 cd01595, Adenylsuccinate_lyase_like, Adenylsuccinate lyase (ASL)_like

 Score = 37.9 bits (89), Expect = 0.003
 Identities = 11/25 (44%), Positives = 14/25 (56%)

Query: 225 MQHNFSDMKKFTTWRQLWIYLAEAQ 249
           M+  FS+  K  TW  +   LAEAQ
Sbjct: 1   MRAIFSEENKLRTWLDVEAALAEAQ 25

This group contains ASL, prokaryotic-type 3-carboxy-cis,cis-muconate cycloisomerase (pCMLE), and related proteins. These proteins are members of the Lyase class I family. Members of this family for the most part catalyze similar beta-elimination reactions in which a C-N or C-O bond is cleaved with the release of fumarate as one of the products. These proteins are active as tetramers. The four active sites of the homotetrameric enzyme are each formed by residues from three different subunits. ASL catalyzes two steps in the de novo purine biosynthesis: the conversion of 5-aminoimidazole-(N-succinylocarboxamide) ribotide (SAICAR) into 5-aminoimidazole-4-carboxamide ribotide (AICAR) and; the conversion of adenylsuccinate (SAMP) into adenosine monophosphate (AMP). pCMLE catalyzes the cyclization of 3-carboxy-cis,cis-muconate (3CM) to 4-carboxy-muconolactone, in the beta-ketoadipate pathway. ASL deficiency has been linked to several pathologies including psychomotor retardation with autistic features, epilepsy and muscle wasting. Length = 381

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	253
COG0015	438	PurB Adenylosuccinate lyase [Nucleotide transport	99.7
PRK07492	435	adenylosuccinate lyase; Provisional	99.53
PRK07380	431	adenylosuccinate lyase; Provisional	99.52
cd03302	436	Adenylsuccinate_lyase_2 Adenylsuccinate lyase (ASL	99.42
PRK08470	442	adenylosuccinate lyase; Provisional	99.39
PLN02848	458	adenylosuccinate lyase	99.21
PRK09053	452	3-carboxy-cis,cis-muconate cycloisomerase; Provisi	99.15
PRK09285	456	adenylosuccinate lyase; Provisional	99.14
PRK06390	451	adenylosuccinate lyase; Provisional	99.14
PRK08540	449	adenylosuccinate lyase; Reviewed	99.1
PRK05975	351	3-carboxy-cis,cis-muconate cycloisomerase; Provisi	99.04
TIGR00928	435	purB adenylosuccinate lyase. This family consists	98.94
cd01597	437	pCLME prokaryotic 3-carboxy-cis,cis-muconate cyclo	98.83
cd01598	425	PurB PurB_like adenylosuccinases (adenylsuccinate	98.8
cd01360	387	Adenylsuccinate_lyase_1 Adenylsuccinate lyase (ASL	98.73
TIGR02426	338	protocat_pcaB 3-carboxy-cis,cis-muconate cycloisom	98.62
cd01595	381	Adenylsuccinate_lyase_like Adenylsuccinate lyase (	98.34
KOG2700|consensus	481		97.81
PF00206	312	Lyase_1: Lyase; InterPro: IPR022761 This entry rep	97.63
PRK02186	887	argininosuccinate lyase; Provisional	97.17
PRK12308	614	bifunctional argininosuccinate lyase/N-acetylgluta	96.79
PRK06705	502	argininosuccinate lyase; Provisional	96.75
PRK04833	455	argininosuccinate lyase; Provisional	96.56
cd01334	325	Lyase_I Lyase class I family; a group of proteins	95.67
cd01357	450	Aspartase Aspartase. This subgroup contains Escher	95.55
cd01359	435	Argininosuccinate_lyase Argininosuccinate lyase (a	95.1
TIGR00979	458	fumC_II fumarate hydratase, class II. Putative fum	94.31
cd01362	455	Fumarase_classII Class II fumarases. This subgroup	92.77
PRK00485	464	fumC fumarate hydratase; Reviewed	91.82
PRK13353	473	aspartate ammonia-lyase; Provisional	91.55
TIGR00839	468	aspA aspartate ammonia-lyase. Fumarate hydratase s	90.18
PRK12273	472	aspA aspartate ammonia-lyase; Provisional	90.16

>COG0015 PurB Adenylosuccinate lyase [Nucleotide transport and metabolism]

Probab=99.70  E-value=1.5e-18  Score=166.67  Aligned_cols=94  Identities=27%  Similarity=0.338  Sum_probs=81.2

Q ss_pred             ccCCCCCHHHHhcCCchhHHHHHHHHHHHHHHHHHc-CC-CCccccCccccc---cccccceeeeccccceeeeeccc-e
Q psy14320         12 LSTRYASKEMQHNFSDMKKFTTWRQLWIYLAEAQQS-GF-RNNIYIDPKHNF---TLEADRCTVVDSRLGVELERQDD-V   85 (253)
Q Consensus        12 MI~RYsspEMr~IWSeEnKfqtWLkVE~ALAeAqaE-GI-P~~ai~~Ik~~a---~fDieRI~~~~~~~~ie~e~~~~-v   85 (253)
                      |+.||+++||+.|||+++|++.||+||+|+|+||++ |+ |.++.+.|.++.   .+|++||.+      ||.+++|| +
T Consensus         1 ~~~RY~~~em~~ifS~~~~~~~~l~vE~ala~A~aelG~Ip~~a~~~I~~~~~~~~~d~~~i~e------ie~~t~HdV~   74 (438)
T COG0015           1 LDGRYSSPEMRAIFSEEAKLRAWLKVEAALARAQAELGVIPAEAAAEIDAAAAFAEFDLERIKE------IEAETGHDVK   74 (438)
T ss_pred             CCcccCcHHHHHHcCHHHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHhcccccCHHHHHH------HHHHhCCCcH
Confidence            578999999999999999999999999999999999 95 888888888774   466666655      99996555 9


Q ss_pred             eecccccCCCCccCCCceeEEEecccccC
Q psy14320         86 GKKRSRSEEPEDCRGEEKVEVVLGGAGVD  114 (253)
Q Consensus        86 aftr~~se~~~~~~gee~~~v~~g~~~~~  114 (253)
                      ||.|+++|..   -|++.+|||||...-|
T Consensus        75 a~v~~l~e~~---~~~~~~~VH~GaTS~D  100 (438)
T COG0015          75 ALVRALAEKV---GEEASEYVHFGATSQD  100 (438)
T ss_pred             HHHHHHHHhc---CcccccceecccchHH
Confidence            9999999973   3389999999987655

>PRK07492 adenylosuccinate lyase; Provisional

Probab=99.53  E-value=5e-16  Score=147.63  Aligned_cols=93  Identities=20%  Similarity=0.203  Sum_probs=80.7

Q ss_pred             ccCCCCCHHHHhcCCchhHHHHHHHHHHHHHHHHHc-CC-CCccccCccccc---cccccceeeeccccceeeeeccc-e
Q psy14320         12 LSTRYASKEMQHNFSDMKKFTTWRQLWIYLAEAQQS-GF-RNNIYIDPKHNF---TLEADRCTVVDSRLGVELERQDD-V   85 (253)
Q Consensus        12 MI~RYsspEMr~IWSeEnKfqtWLkVE~ALAeAqaE-GI-P~~ai~~Ik~~a---~fDieRI~~~~~~~~ie~e~~~~-v   85 (253)
                      |++||++++|+.|||++++++.|++||+||++||++ |+ |+++.+.|.+++   .+|+++|..      +|..+.|| +
T Consensus         1 ~~~~y~~~~~~~i~s~~~~~~~~l~vE~ala~a~~~~g~ip~~aa~~i~~~~~~~~~d~~~~~~------~~~~~~h~v~   74 (435)
T PRK07492          1 MIPRYSRPEMVAIWEPETKFRIWFEIEAHACEAQAELGVIPKEAAETIWEKGKDAEFDVARIDE------IEAVTKHDVI   74 (435)
T ss_pred             CCcccCcHHHHHHcCHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHhCcccCCCHHHHHH------HHHHhCCChH
Confidence            789999999999999999999999999999999999 95 988888887765   466666554      88886555 9


Q ss_pred             eecccccCCCCccCCCceeEEEecccccC
Q psy14320         86 GKKRSRSEEPEDCRGEEKVEVVLGGAGVD  114 (253)
Q Consensus        86 aftr~~se~~~~~~gee~~~v~~g~~~~~  114 (253)
                      +|-+.+.+..    |+..+|||||..--|
T Consensus        75 a~~~~L~~~~----g~~~~~vH~G~Ts~D   99 (435)
T PRK07492         75 AFLTHLAEFV----GPDARFVHQGMTSSD   99 (435)
T ss_pred             HHHHHHHHHh----hHhhhhhcCCCChhh
Confidence            9999999964    999999999988665

>PRK07380 adenylosuccinate lyase; Provisional

Probab=99.52  E-value=8.1e-16  Score=146.10  Aligned_cols=93  Identities=26%  Similarity=0.343  Sum_probs=81.1

Q ss_pred             ccCCCCCHHHHhcCCchhHHHHHHHHHHHHHHHHHc-CC-CCccccCccccccccccceeeeccccceeeeeccc-eeec
Q psy14320         12 LSTRYASKEMQHNFSDMKKFTTWRQLWIYLAEAQQS-GF-RNNIYIDPKHNFTLEADRCTVVDSRLGVELERQDD-VGKK   88 (253)
Q Consensus        12 MI~RYsspEMr~IWSeEnKfqtWLkVE~ALAeAqaE-GI-P~~ai~~Ik~~a~fDieRI~~~~~~~~ie~e~~~~-vaft   88 (253)
                      |++||++++|+.|||+++++++|++||+|+++||++ |+ |.++.+.|++.++||+++|+.      +|..+.|| ++|.
T Consensus         1 ~~~~y~~~~~~~~fs~~~~~~~~l~vE~ala~a~~~~g~ip~~aa~~i~~~~~~d~~~i~~------~~~~~~h~v~a~v   74 (431)
T PRK07380          1 MIERYTLPEMGNIWTDTAKFQTWLDVEIAVCEAQAELGKIPQEAVEEIKAKANFDPQRILE------IEAEVRHDVIAFL   74 (431)
T ss_pred             CccccCcHHHHHHcCHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhccCCCHHHHHH------HHHHhCCChHHHH
Confidence            456999999999999999999999999999999999 95 988888888777777766665      99996555 9999


Q ss_pred             ccccCCCCccCCCceeEEEecccccC
Q psy14320         89 RSRSEEPEDCRGEEKVEVVLGGAGVD  114 (253)
Q Consensus        89 r~~se~~~~~~gee~~~v~~g~~~~~  114 (253)
                      |++.|.    +|+..+|||||..--|
T Consensus        75 ~~l~~~----~g~~~~~vH~G~Ts~D   96 (431)
T PRK07380         75 TNVNEY----VGDAGRYIHLGMTSSD   96 (431)
T ss_pred             HHHHHH----HHHhhccccCCCChhh
Confidence            999996    3888999999998655

>cd03302 Adenylsuccinate_lyase_2 Adenylsuccinate lyase (ASL)_subgroup 2

Probab=99.42  E-value=1.5e-14  Score=137.27  Aligned_cols=93  Identities=31%  Similarity=0.463  Sum_probs=78.1

Q ss_pred             ccCCCCCHHHHhcCCchhHHHHHHHHHHHHHHHHHc-CC--CCccccCccccc-cccccceeeeccccceeeeeccc-ee
Q psy14320         12 LSTRYASKEMQHNFSDMKKFTTWRQLWIYLAEAQQS-GF--RNNIYIDPKHNF-TLEADRCTVVDSRLGVELERQDD-VG   86 (253)
Q Consensus        12 MI~RYsspEMr~IWSeEnKfqtWLkVE~ALAeAqaE-GI--P~~ai~~Ik~~a-~fDieRI~~~~~~~~ie~e~~~~-va   86 (253)
                      +..||++++|+.|||++++++.|+++|+||++||++ |+  |.++.+.|++.+ .+|+++|.+      +|.++.|| ++
T Consensus         1 ~~~ry~~~~~~~~fs~~~~~~~~l~~e~ala~a~~~~g~~ip~~~a~~i~~~~~~~d~~~i~~------~e~~~~hdv~a   74 (436)
T cd03302           1 LASRYASKEMVYIFSPRKKFSTWRKLWLWLAEAEKELGLDISDEQIEEMKANVENIDFEIAAA------EEKKLRHDVMA   74 (436)
T ss_pred             CCCCcCCHHHHHHcChHHHHHHHHHHHHHHHHhhHHhCCCCCHHHHHHHHHhhhcCCHHHHHH------HHHHhCcCchH
Confidence            457999999999999999999999999999999999 96  666777777665 466666665      99996555 99


Q ss_pred             ecccccCCCCccCCCceeEEEecccccC
Q psy14320         87 KKRSRSEEPEDCRGEEKVEVVLGGAGVD  114 (253)
Q Consensus        87 ftr~~se~~~~~~gee~~~v~~g~~~~~  114 (253)
                      |.+.++|..    |+..+|||||..--|
T Consensus        75 ~~~~l~~~~----~~~~~~vH~G~TS~D   98 (436)
T cd03302          75 HVHAFGLLC----PAAAGIIHLGATSCF   98 (436)
T ss_pred             HHHHHHHHh----HhccCeeeeCcCHHH
Confidence            999998864    888999999986433

This subgroup contains mainly eukaryotic proteins similar to ASL, a member of the Lyase class I family. Members of this family for the most part catalyze similar beta-elimination reactions in which a C-N or C-O bond is cleaved with the release of fumarate as one of the products. These proteins are active as tetramers. The four active sites of the homotetrameric enzyme are each formed by residues from three different subunits. ASL catalyzes two steps in the de novo purine biosynthesis: the conversion of 5-aminoimidazole-(N-succinylocarboxamide) ribotide (SAICAR) into 5-aminoimidazole-4-carboxamide ribotide (AICAR) and, the conversion of adenylsuccinate (SAMP) into adenosine monophosphate (AMP). ASL deficiency has been linked to several pathologies including psychomotor retardation with autistic features, epilepsy and muscle wasting.

>PRK08470 adenylosuccinate lyase; Provisional

Probab=99.39  E-value=4.2e-14  Score=134.53  Aligned_cols=94  Identities=23%  Similarity=0.273  Sum_probs=79.9

Q ss_pred             ccCCCCCHHHHhcCCchhHHHHHHHHHHHHHHHHHc-CC-CCccccCccccccccccceeeeccccceeeee-ccceeec
Q psy14320         12 LSTRYASKEMQHNFSDMKKFTTWRQLWIYLAEAQQS-GF-RNNIYIDPKHNFTLEADRCTVVDSRLGVELER-QDDVGKK   88 (253)
Q Consensus        12 MI~RYsspEMr~IWSeEnKfqtWLkVE~ALAeAqaE-GI-P~~ai~~Ik~~a~fDieRI~~~~~~~~ie~e~-~~~vaft   88 (253)
                      |+.||++++|+.|||++++++.|++||+|+++|+++ |+ |.++.+.|.+...+|++++.      ++|..+ ||+++|-
T Consensus         1 ~~~~y~~~~~~~i~s~~~~~~~~l~ve~A~a~al~~~G~Ip~~~a~~I~~~~~~d~~~~~------~~~~~~~~dv~~~v   74 (442)
T PRK08470          1 MVERYAREEMKKKWTMQAKYDAWLEVEKAAVKAWNKLGLIPDSDCEKICKNAKFDIARID------EIEKTTKHDLIAFL   74 (442)
T ss_pred             CCcccCcHHHHHHcCHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHhcccchHHHH------HHHHccCCChHHHH
Confidence            567999999999999999999999999999999999 95 98888888877766776654      466665 5559999


Q ss_pred             ccccCCCCccCCCceeEEEecccccCC
Q psy14320         89 RSRSEEPEDCRGEEKVEVVLGGAGVDG  115 (253)
Q Consensus        89 r~~se~~~~~~gee~~~v~~g~~~~~~  115 (253)
                      +.+.|.    +|+..+|||||-.--|-
T Consensus        75 ~~L~e~----~g~~~~~vH~G~TsnDi   97 (442)
T PRK08470         75 TSVSES----LGEESRFVHYGMTSSDC   97 (442)
T ss_pred             HHHHHH----ccccccceecCCChhch
Confidence            999886    39899999999887663

>PLN02848 adenylosuccinate lyase

Probab=99.21  E-value=8.3e-13  Score=127.06  Aligned_cols=102  Identities=13%  Similarity=0.009  Sum_probs=80.1

Q ss_pred             cccccccCCCCC--HHHHhcCCchhHHHHHHHHHHHHHHHHHc-C-C---CC---ccccCccccc-cc---cccceeeec
Q psy14320          7 KYISPLSTRYAS--KEMQHNFSDMKKFTTWRQLWIYLAEAQQS-G-F---RN---NIYIDPKHNF-TL---EADRCTVVD   72 (253)
Q Consensus         7 sY~sPMI~RYss--pEMr~IWSeEnKfqtWLkVE~ALAeAqaE-G-I---P~---~ai~~Ik~~a-~f---DieRI~~~~   72 (253)
                      +=++|+.+||++  ++|+.|||++++++.|++||+++++|+++ | |   |.   ++.+.|++.+ .|   |++++    
T Consensus        10 ~~~~pl~~ry~~~~~e~~~ifSd~a~~~~~l~vE~ala~a~a~~g~i~~~P~i~~~aa~~i~~~~~~~~~~d~~~~----   85 (458)
T PLN02848         10 TALSPLDGRYWSKVKDLRPIFSEFGLIRYRVLVEVKWLLKLSQIPEVTEVPPFSDEANSFLEGIIAGFSVDDALEV----   85 (458)
T ss_pred             ccCCCchhhhcCCcHHHHHHcCHHHHHHHHHHHHHHHHHHHHhcCCCCCCCCCCHHHHHHHHHHHHhcCHhhHHHH----
Confidence            357999999999  99999999999999999999999999999 8 5   76   6777777654 35   44444    


Q ss_pred             cccceeeeeccc-eeecccccCCCCc--cCCCceeEEEecccccC
Q psy14320         73 SRLGVELERQDD-VGKKRSRSEEPED--CRGEEKVEVVLGGAGVD  114 (253)
Q Consensus        73 ~~~~ie~e~~~~-vaftr~~se~~~~--~~gee~~~v~~g~~~~~  114 (253)
                        .++|.+++|| +||-+.+.|...+  -+|+..+|||||..--|
T Consensus        86 --~~~e~~t~hdv~a~~~~l~~~~~~~~~~~~~~~~vH~G~TsqD  128 (458)
T PLN02848         86 --KKIERVTNHDVKAVEYFLKQKCKSHPELAKVLEFFHFACTSED  128 (458)
T ss_pred             --HHHHHHhCCCcHHHHHHHHHHhccccchhhhhCcccCCCCHHH
Confidence              4588886555 9999999987521  01224689999987654

>PRK09053 3-carboxy-cis,cis-muconate cycloisomerase; Provisional

Probab=99.15  E-value=4.4e-12  Score=120.64  Aligned_cols=100  Identities=16%  Similarity=0.108  Sum_probs=79.5

Q ss_pred             cccccC-CCCCHHHHhcCCchhHHHHHHHHHHHHHHHHHc-CC-CCccccCccccc---cccccceeeeccccceeeeec
Q psy14320          9 ISPLST-RYASKEMQHNFSDMKKFTTWRQLWIYLAEAQQS-GF-RNNIYIDPKHNF---TLEADRCTVVDSRLGVELERQ   82 (253)
Q Consensus         9 ~sPMI~-RYsspEMr~IWSeEnKfqtWLkVE~ALAeAqaE-GI-P~~ai~~Ik~~a---~fDieRI~~~~~~~~ie~e~~   82 (253)
                      .++|++ ||++++|+.|||++++++.|++||+|+|+|+++ |+ |+++.+.|.+.+   .||+++      +.+.+....
T Consensus         4 ~~~~~~~~~~~~~~~~i~s~~~~i~a~l~ve~A~A~a~~~~G~ip~~~a~~I~~a~~~~~~d~~~------~~~~~~~~~   77 (452)
T PRK09053          4 SARLTDLYFGSPAMRAIFSDRATVQRMLDFEAALARAEAACGVIPAAAVAPIEAACDAERLDLDA------LAQAAALAG   77 (452)
T ss_pred             CchhhhhhcCCHHHHHHcCcHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHhccccCCCHHH------HHHHHhhcC
Confidence            467777 999999999999999999999999999999999 95 988888887765   255554      445777755


Q ss_pred             cc-eeecccccCCCCccCCCceeEEEecccccC
Q psy14320         83 DD-VGKKRSRSEEPEDCRGEEKVEVVLGGAGVD  114 (253)
Q Consensus        83 ~~-vaftr~~se~~~~~~gee~~~v~~g~~~~~  114 (253)
                      |+ ++|.+++.+....--++-..|||+|-.--|
T Consensus        78 ~~~~~lv~~l~~~~~~~~~~~~~~vH~G~SsnD  110 (452)
T PRK09053         78 NLAIPLVKQLTAQVAARDAEAARYVHWGATSQD  110 (452)
T ss_pred             CchHHHHHHHHHHhcccCcchhccccCCCChhh
Confidence            55 999888887642111356899999987665

>PRK09285 adenylosuccinate lyase; Provisional

Probab=99.14  E-value=4.1e-12  Score=122.02  Aligned_cols=102  Identities=17%  Similarity=0.081  Sum_probs=79.0

Q ss_pred             cccccccCCCCC--HHHHhcCCchhHHHHHHHHHHHHHHHHHc-C----CCCccccC---ccccc-cc---cccceeeec
Q psy14320          7 KYISPLSTRYAS--KEMQHNFSDMKKFTTWRQLWIYLAEAQQS-G----FRNNIYID---PKHNF-TL---EADRCTVVD   72 (253)
Q Consensus         7 sY~sPMI~RYss--pEMr~IWSeEnKfqtWLkVE~ALAeAqaE-G----IP~~ai~~---Ik~~a-~f---DieRI~~~~   72 (253)
                      .-++|+..||++  ++|+.|||++++++.|++||+|+++|+++ |    ||+.+.+.   |++.. .|   |+++|.   
T Consensus         7 ~~~~p~~~ry~~~~~e~~~~~s~~~~~~~~l~vE~A~a~a~a~~g~~~~ip~~~~~~~~~i~~~~~~~~~~d~~~i~---   83 (456)
T PRK09285          7 TALSPLDGRYASKTAALRPIFSEFGLIRYRVQVEVEWLIALAAHPGIPEVPPFSAEANAFLRAIVENFSEEDAARIK---   83 (456)
T ss_pred             cCCCCCccccCCCCHHHHHHhCHHHHHHHHHHHHHHHHHHHHhcCCCCCCCCCCHHHHHHHHHHHHhhCcccHHHHH---
Confidence            468999999999  99999999999999999999999999999 6    45554444   55543 35   555544   


Q ss_pred             cccceeeeeccc-eeecccccCCCCc--cCCCceeEEEecccccC
Q psy14320         73 SRLGVELERQDD-VGKKRSRSEEPED--CRGEEKVEVVLGGAGVD  114 (253)
Q Consensus        73 ~~~~ie~e~~~~-vaftr~~se~~~~--~~gee~~~v~~g~~~~~  114 (253)
                         ++|..++|| ++|.+.+.|...+  -|++..+|||||..--|
T Consensus        84 ---~~e~~~~hdv~a~~~~l~~~~~~~~~~~~~~~~vH~G~Ts~D  125 (456)
T PRK09285         84 ---EIERTTNHDVKAVEYFLKEKLAGLPELEAVSEFIHFACTSED  125 (456)
T ss_pred             ---HHHHHhCCChHHHHHHHHHHhcccCcchhHHhHccCCCChhh
Confidence               489886555 9999999987421  01256899999988655

>PRK06390 adenylosuccinate lyase; Provisional

Probab=99.14  E-value=4.4e-12  Score=120.83  Aligned_cols=97  Identities=22%  Similarity=0.312  Sum_probs=79.5

Q ss_pred             ccccccCCCCCHHHHhcCCchhHHHHHHHHHHHHHHHHHc-CC-CCccccCcccccc---ccccceeeeccccceeeee-
Q psy14320          8 YISPLSTRYASKEMQHNFSDMKKFTTWRQLWIYLAEAQQS-GF-RNNIYIDPKHNFT---LEADRCTVVDSRLGVELER-   81 (253)
Q Consensus         8 Y~sPMI~RYsspEMr~IWSeEnKfqtWLkVE~ALAeAqaE-GI-P~~ai~~Ik~~a~---fDieRI~~~~~~~~ie~e~-   81 (253)
                      .+||+..||++++|+.|||++++++.|++||+|+++++++ || |.++.+.|.+...   +|++++.      ++|.++ 
T Consensus         2 ~~~~~~~~y~~~~~~~i~s~~~~~~~~l~ve~A~a~al~~~Giip~~~a~~I~~~l~~~~~d~~~~~------~~~~~~~   75 (451)
T PRK06390          2 VVSPIEYRYGRDQVKYIFDDENRLRYMLKVEAAIAKAEYEYGIIPRDAFLDIKNAVDSNSVRLERVR------EIESEIK   75 (451)
T ss_pred             CCCCcCcccCCHHHHHHcCHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHhcccccCCHHHHH------HHHHHhC
Confidence            4799999999999999999999999999999999999999 96 8887777766542   4444433      367774 


Q ss_pred             ccceeecccccCCCCccCCCceeEEEecccccC
Q psy14320         82 QDDVGKKRSRSEEPEDCRGEEKVEVVLGGAGVD  114 (253)
Q Consensus        82 ~~~vaftr~~se~~~~~~gee~~~v~~g~~~~~  114 (253)
                      ||.++|-+.+.+..    |+-.+|+|+|-.--|
T Consensus        76 ~dv~~~~~~L~~~~----g~~~~~iH~G~SsnD  104 (451)
T PRK06390         76 HDVMALVEALSEQC----SAGKNYVHFGVTSND  104 (451)
T ss_pred             CCcHHHHHHHHHHh----hhhhhheecCccHhh
Confidence            55599999998863    877899999987665

>PRK08540 adenylosuccinate lyase; Reviewed

Probab=99.10  E-value=9.8e-12  Score=118.07  Aligned_cols=97  Identities=23%  Similarity=0.324  Sum_probs=76.0

Q ss_pred             cccccCCCCCHHHHhcCCchhHHHHHHHHHHHHHHHHHc-CC-CCccccCcccccc---ccccceeeeccccceeeeecc
Q psy14320          9 ISPLSTRYASKEMQHNFSDMKKFTTWRQLWIYLAEAQQS-GF-RNNIYIDPKHNFT---LEADRCTVVDSRLGVELERQD   83 (253)
Q Consensus         9 ~sPMI~RYsspEMr~IWSeEnKfqtWLkVE~ALAeAqaE-GI-P~~ai~~Ik~~a~---fDieRI~~~~~~~~ie~e~~~   83 (253)
                      ++|+.+||++++|+.|||+++++++|++||+|++.++++ |+ |.++.+.|.+...   +|++++      -+++.+..|
T Consensus         3 ~~~~~~~~~~~~~~~~~s~~~~~~~~l~ve~A~a~~l~~~Giip~~~a~~I~~~l~~~~i~~~~~------~~~~~~~~~   76 (449)
T PRK08540          3 IHPIDYRYGTPEMKRVWSEENKLQKMLDVEAALARAEAELGLIPEEAAEEINRKASTKYVKLERV------KEIEAEIHH   76 (449)
T ss_pred             cCCcCcccCCHHHHHHcChHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHhcccccCCHHHH------HHHHHHhCC
Confidence            689999999999999999999999999999999999999 95 8887777765542   333333      345556555


Q ss_pred             c-eeecccccCCCCccCCCceeEEEecccccC
Q psy14320         84 D-VGKKRSRSEEPEDCRGEEKVEVVLGGAGVD  114 (253)
Q Consensus        84 ~-vaftr~~se~~~~~~gee~~~v~~g~~~~~  114 (253)
                      | +++=+.+.+..   -|+-.+|||+|-.--|
T Consensus        77 ~v~~~e~~L~~~~---~~~~~~~vH~g~S~nD  105 (449)
T PRK08540         77 DIMAVVKALSEVC---EGDAGEYVHFGATSND  105 (449)
T ss_pred             CcHHHHHHHHHHh---hhhhhcceecCccHhh
Confidence            5 88888887753   1466899999987555

>PRK05975 3-carboxy-cis,cis-muconate cycloisomerase; Provisional

Probab=99.04  E-value=2.3e-11  Score=113.06  Aligned_cols=98  Identities=15%  Similarity=0.107  Sum_probs=75.3

Q ss_pred             cccccccC-CCCCHHHHhcCCchhHHHHHHHHHHHHHHHHHc-CC-CCccccCcccccc---ccccceeeeccccceeee
Q psy14320          7 KYISPLST-RYASKEMQHNFSDMKKFTTWRQLWIYLAEAQQS-GF-RNNIYIDPKHNFT---LEADRCTVVDSRLGVELE   80 (253)
Q Consensus         7 sY~sPMI~-RYsspEMr~IWSeEnKfqtWLkVE~ALAeAqaE-GI-P~~ai~~Ik~~a~---fDieRI~~~~~~~~ie~e   80 (253)
                      .|.++|+. ||++++|+.|||++++++.|++||+|+++|+++ |+ |+++.+.|.+...   +|+.+      .-+.+..
T Consensus         5 ~~~~~~~~~~~~~~~~~~~~s~~~~i~a~l~vE~A~a~a~~~~G~Ip~~~a~~I~~a~~~~~~d~~~------~~~~~~~   78 (351)
T PRK05975          5 VFDHPFLSGLFGDDEIAALFSAEADIAAMLAFEAALAEAEAEHGIIPAEAAERIAAACETFEPDLAA------LRHATAR   78 (351)
T ss_pred             ccccchhhccCCCHHHHHHcCcHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHhccCCCCHHH------HhhHHHh
Confidence            36688887 999999999999999999999999999999999 95 8887777766542   33322      2234445


Q ss_pred             eccc-eeecccccCCCCccCC-CceeEEEecccccC
Q psy14320         81 RQDD-VGKKRSRSEEPEDCRG-EEKVEVVLGGAGVD  114 (253)
Q Consensus        81 ~~~~-vaftr~~se~~~~~~g-ee~~~v~~g~~~~~  114 (253)
                      ..|+ ++|-+.+.+.    +| +...|||||-.--|
T Consensus        79 ~g~~v~~~v~~l~~~----~g~~~~~~vH~G~TsnD  110 (351)
T PRK05975         79 DGVVVPALVRQLRAA----VGEEAAAHVHFGATSQD  110 (351)
T ss_pred             cCCcHHHHHHHHHHH----hCchhhCcccCCCChhh
Confidence            4344 7898888875    35 45789999987655

>TIGR00928 purB adenylosuccinate lyase

Probab=98.94  E-value=1e-10  Score=110.69  Aligned_cols=93  Identities=23%  Similarity=0.317  Sum_probs=74.0

Q ss_pred             ccCCCCCHHHHhcCCchhHHHHHHHHHHHHHHHHHc-CC-CCccccCcccccc---ccccceeeeccccceeeeeccc-e
Q psy14320         12 LSTRYASKEMQHNFSDMKKFTTWRQLWIYLAEAQQS-GF-RNNIYIDPKHNFT---LEADRCTVVDSRLGVELERQDD-V   85 (253)
Q Consensus        12 MI~RYsspEMr~IWSeEnKfqtWLkVE~ALAeAqaE-GI-P~~ai~~Ik~~a~---fDieRI~~~~~~~~ie~e~~~~-v   85 (253)
                      +.+||++++|+.|||++++++.|+++|+|++.++++ |+ |.++.+.|.+...   +|++++      -+.+....|| +
T Consensus         1 ~~~~y~~~~~~~ifs~~~~~~~~l~ve~A~a~~l~~~giip~~~a~~i~~~~~~~~~d~~~l------~~~~~~~~~~v~   74 (435)
T TIGR00928         1 LDERYGTPEMRAIWSEENKFKTWLDVEVALLRALAELGVIPAEAVKEIRAKANFTDVDLARI------KEIEAVTRHDVK   74 (435)
T ss_pred             CCcccCcHHHHHHhCHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhhCCCCccCHHHH------HHHHHHHCcChH
Confidence            357999999999999999999999999999999999 95 8888777776532   334443      3455555444 8


Q ss_pred             eecccccCCCCccCCCceeEEEecccccC
Q psy14320         86 GKKRSRSEEPEDCRGEEKVEVVLGGAGVD  114 (253)
Q Consensus        86 aftr~~se~~~~~~gee~~~v~~g~~~~~  114 (253)
                      +|=+.+.+..    |+..+|||+|-.--|
T Consensus        75 ~~e~~l~~~~----g~~~~~vh~g~SsnD   99 (435)
T TIGR00928        75 AVVYALKEKC----GAEGEFIHFGATSND   99 (435)
T ss_pred             HHHHHHHHHh----hhhhhheeecccHHH
Confidence            9989888864    777899999987555

This family consists of adenylosuccinate lyase, the enzyme that catalyzes step 8 in the purine biosynthesis pathway for de novo synthesis of IMP and also the final reaction in the two-step sequence from IMP to AMP.

>cd01597 pCLME prokaryotic 3-carboxy-cis,cis-muconate cycloisomerase (CMLE)_like

Probab=98.83  E-value=6.1e-10  Score=105.31  Aligned_cols=94  Identities=15%  Similarity=0.154  Sum_probs=73.2

Q ss_pred             CCCCCHHHHhcCCchhHHHHHHHHHHHHHHHHHc-CC-CCccccCccccccccccceeeeccccceeeeeccc-eeeccc
Q psy14320         14 TRYASKEMQHNFSDMKKFTTWRQLWIYLAEAQQS-GF-RNNIYIDPKHNFTLEADRCTVVDSRLGVELERQDD-VGKKRS   90 (253)
Q Consensus        14 ~RYsspEMr~IWSeEnKfqtWLkVE~ALAeAqaE-GI-P~~ai~~Ik~~a~fDieRI~~~~~~~~ie~e~~~~-vaftr~   90 (253)
                      +||++++|+.|||++++++.|+.||+|.+.++++ |+ |.++.+.|.+.... + ++. .+...+.+.+..|+ +++-+.
T Consensus         4 ~~y~~~~~~~~~s~~~~i~~~~~ve~A~a~~l~~~Gii~~~~a~~I~~al~~-~-~~~-~~~~~~~~~~~~~~v~a~e~~   80 (437)
T cd01597           4 DLFGTPAMREIFSDENRVQAMLDVEAALARAQAELGVIPKEAAAEIAAAADV-E-RLD-LEALAEATARTGHPAIPLVKQ   80 (437)
T ss_pred             cccCCHHHHHHcCcHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHhccc-c-CCC-HHHHHHHHHHhCCCcHHHHHH
Confidence            4999999999999999999999999999999999 95 88877777654321 1 111 24455577776666 799999


Q ss_pred             ccCCCCccCCCc-eeEEEecccccC
Q psy14320         91 RSEEPEDCRGEE-KVEVVLGGAGVD  114 (253)
Q Consensus        91 ~se~~~~~~gee-~~~v~~g~~~~~  114 (253)
                      +.|..    |++ .+|||+|-.--|
T Consensus        81 l~e~~----g~~~g~~lH~grSrnD  101 (437)
T cd01597          81 LTAAC----GDAAGEYVHWGATTQD  101 (437)
T ss_pred             HHHHc----CccccCeeecCccHhH
Confidence            98864    765 799999986544

This subgroup contains pCLME and related proteins, and belongs to the Lyase class I family. Members of this family for the most part catalyze similar beta-elimination reactions in which a C-N or C-O bond is cleaved with the release of fumarate as one of the products. These proteins are active as tetramers. The four active sites of the homotetrameric enzyme are each formed by residues from three different subunits. CMLE catalyzes the cyclization of 3-carboxy-cis,cis-muconate (3CM) to 4-carboxy-muconolactone in the beta-ketoadipate pathway. This pathway is responsible for the catabolism of a variety of aromatic compounds into intermediates of the citric cycle in prokaryotic and eukaryotic micro-organisms.

>cd01598 PurB PurB_like adenylosuccinases (adenylsuccinate lyase, ASL)

Probab=98.80  E-value=2.7e-10  Score=108.99  Aligned_cols=88  Identities=14%  Similarity=0.000  Sum_probs=68.5

Q ss_pred             HHhcCCchhHHHHHHHHHHHHHHHHHc-C-CCC------ccccCccccc---c-ccccceeeeccccceeeeeccc-eee
Q psy14320         21 MQHNFSDMKKFTTWRQLWIYLAEAQQS-G-FRN------NIYIDPKHNF---T-LEADRCTVVDSRLGVELERQDD-VGK   87 (253)
Q Consensus        21 Mr~IWSeEnKfqtWLkVE~ALAeAqaE-G-IP~------~ai~~Ik~~a---~-fDieRI~~~~~~~~ie~e~~~~-vaf   87 (253)
                      |+.|||+++++++|++||+|+++||++ | ||.      ++.+.|++..   . +|+++|..      +|..+.|| ++|
T Consensus         1 ~~~~~s~~~~~~~~l~vE~ala~a~a~~g~Ip~~~~~~~~aa~~i~~~~~~~~~~d~~~~~~------~~~~~~hdv~al   74 (425)
T cd01598           1 LRPYFSEYALIKYRVQVEVEWLIALSNLEEIPEVPPLTKEELKFLRAIIENFSEEDALRIKE------IEATTNHDVKAV   74 (425)
T ss_pred             CHHHhCHHHHHHHHHHHHHHHHHHHHhcCCCCCCCCCCHHHHHHHHHHHhhcCccCHHHHHH------HHHHHCCCcHHH
Confidence            478999999999999999999999999 9 488      7777776655   2 56655555      88886555 999


Q ss_pred             cccccCCCCcc--CCCceeEEEecccccC
Q psy14320         88 KRSRSEEPEDC--RGEEKVEVVLGGAGVD  114 (253)
Q Consensus        88 tr~~se~~~~~--~gee~~~v~~g~~~~~  114 (253)
                      -+.+.|...+.  +|+...|||||..--|
T Consensus        75 ~~~l~~~~g~~~~~~~~~~~vH~G~TsnD  103 (425)
T cd01598          75 EYFLKEKFETLGLLKKIKEFIHFACTSED  103 (425)
T ss_pred             HHHHHHHhcccccchhhhhHhccCCChhh
Confidence            99999864321  1256789999988665

This subgroup contains EcASL, the product of the purB gene in Escherichia coli, and related proteins. It is a member of the Lyase class I family of the Lyase_I superfamily. Members of the Lyase class I family function as homotetramers to catalyze similar beta-elimination reactions in which a Calpha-N or Calpha-O bond is cleaved with the subsequent release of fumarate as one of the products. The four active sites of the homotetrameric enzyme are each formed by residues from three different subunits. ASL catalyzes two non-sequential steps in the de novo purine biosynthesis pathway: the conversion of 5-aminoimidazole-(N-succinylocarboxamide) ribotide (SAICAR) into 5-aminoimidazole-4-carboxamide ribotide (AICAR) and; the conversion of adenylsuccinate (SAMP) into adenosine monophosphate (AMP).

>cd01360 Adenylsuccinate_lyase_1 Adenylsuccinate lyase (ASL)_subgroup 1

Probab=98.73  E-value=8.2e-10  Score=103.44  Aligned_cols=91  Identities=22%  Similarity=0.325  Sum_probs=73.6

Q ss_pred             CCCCHHHHhcCCchhHHHHHHHHHHHHHHHHHc-CC-CCccccCccccccccccceeeeccccceeeeeccc-eeecccc
Q psy14320         15 RYASKEMQHNFSDMKKFTTWRQLWIYLAEAQQS-GF-RNNIYIDPKHNFTLEADRCTVVDSRLGVELERQDD-VGKKRSR   91 (253)
Q Consensus        15 RYsspEMr~IWSeEnKfqtWLkVE~ALAeAqaE-GI-P~~ai~~Ik~~a~fDieRI~~~~~~~~ie~e~~~~-vaftr~~   91 (253)
                      ||++++|+.|||++++++.|++||+|++.++++ |+ |.++.+.|.+...+|.+++.      +++....|| +++=+.+
T Consensus         1 ~~~~~~~~~~fs~~~~~~~~l~ve~A~a~~l~~~Glip~~~a~~I~~~l~~~~~~~~------~~~~~~~~dv~~~e~~L   74 (387)
T cd01360           1 RYGRPEMKKIWSEENKFRKWLEVEAAVCEAWAKLGVIPAEAAEEIRKKAKFDVERVK------EIEAETKHDVIAFVTAI   74 (387)
T ss_pred             CCCchHHHHHhCHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHhhcCHHHHH------HHHHHhCCChHHHHHHH
Confidence            799999999999999999999999999999999 95 88888888777665555443      245555444 8887777


Q ss_pred             cCCCCccCCCceeEEEecccccCC
Q psy14320         92 SEEPEDCRGEEKVEVVLGGAGVDG  115 (253)
Q Consensus        92 se~~~~~~gee~~~v~~g~~~~~~  115 (253)
                      .+.    +|+..+|||+|-.--|-
T Consensus        75 ~~~----~g~~~~~lH~G~S~nDi   94 (387)
T cd01360          75 AEY----CGEAGRYIHFGLTSSDV   94 (387)
T ss_pred             HHH----HHHhhhheeCCCChhhh
Confidence            775    38889999999886653

This subgroup contains bacterial and archeal proteins similar to ASL, a member of the Lyase class I family. Members of this family for the most part catalyze similar beta-elimination reactions in which a C-N or C-O bond is cleaved with the release of fumarate as one of the products. These proteins are active as tetramers. The four active sites of the homotetrameric enzyme are each formed by residues from three different subunits. ASL catalyzes two steps in the de novo purine biosynthesis: the conversion of 5-aminoimidazole-(N-succinylocarboxamide) ribotide (SAICAR) into 5-aminoimidazole-4-carboxamide ribotide (AICAR) and, the conversion of adenylsuccinate (SAMP) into adenosine monophosphate (AMP).

>TIGR02426 protocat_pcaB 3-carboxy-cis,cis-muconate cycloisomerase

Probab=98.62  E-value=5.1e-09  Score=96.73  Aligned_cols=92  Identities=13%  Similarity=0.073  Sum_probs=68.3

Q ss_pred             cCCCCCHHHHhcCCchhHHHHHHHHHHHHHHHHHc-CC-CCccccCcccccc---ccccceeeeccccceeeeeccc-ee
Q psy14320         13 STRYASKEMQHNFSDMKKFTTWRQLWIYLAEAQQS-GF-RNNIYIDPKHNFT---LEADRCTVVDSRLGVELERQDD-VG   86 (253)
Q Consensus        13 I~RYsspEMr~IWSeEnKfqtWLkVE~ALAeAqaE-GI-P~~ai~~Ik~~a~---fDieRI~~~~~~~~ie~e~~~~-va   86 (253)
                      ..||++++|+.|||++++++.|++||+|+++++++ |+ |+++.+.|.+...   +|+.++.      +.+.+..|. ++
T Consensus         3 ~~~~~~~~~~~i~sd~~~i~~~~~ve~A~a~al~~~Gii~~~~a~~I~~a~~~~~~d~~~~~------~~~~~~~~~~~~   76 (338)
T TIGR02426         3 DGLFGDPAALELFSDRAFLRAMLDFEAALARAQADAGLIPAEAAAAIEAACAAAAPDLEALA------HAAATAGNPVIP   76 (338)
T ss_pred             ccccCCHHHHHHcCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHhhccCCCCHHHHH------hHHHhcCCcHHH
Confidence            45999999999999999999999999999999999 95 8887777765442   2222221      233333344 67


Q ss_pred             ecccccCCCCccCCCc-eeEEEecccccC
Q psy14320         87 KKRSRSEEPEDCRGEE-KVEVVLGGAGVD  114 (253)
Q Consensus        87 ftr~~se~~~~~~gee-~~~v~~g~~~~~  114 (253)
                      +-+.+.|.    +|+| ..|||+|-.--|
T Consensus        77 ~~~~l~~~----~g~~~g~~vH~G~S~nD  101 (338)
T TIGR02426        77 LVKALRKA----VAGEAARYVHRGATSQD  101 (338)
T ss_pred             HHHHHHHH----hCccccCcccCCCChhh
Confidence            78888875    3654 679999987655

Members of this family are 3-carboxy-cis,cis-muconate cycloisomerase, the enzyme the catalyzes the second step in the protocatechuate degradation to beta-ketoadipate and then to succinyl-CoA and acetyl-CoA. 4-hydroxybenzoate, 3-hydroxybenzoate, and vanillate all can be converted in one step to protocatechuate. All members of the seed alignment for this model were chosen from within protocatechuate degradation operons of at least three genes of the pathway, from genomes with the complete pathway through beta-ketoadipate.

>cd01595 Adenylsuccinate_lyase_like Adenylsuccinate lyase (ASL)_like

Probab=98.34  E-value=3.1e-08  Score=92.33  Aligned_cols=84  Identities=26%  Similarity=0.322  Sum_probs=66.3

Q ss_pred             HHhcCCchhHHHHHHHHHHHHHHHHHc-CC-CCccccCcccccc---ccccceeeeccccceeeee-ccceeecccccCC
Q psy14320         21 MQHNFSDMKKFTTWRQLWIYLAEAQQS-GF-RNNIYIDPKHNFT---LEADRCTVVDSRLGVELER-QDDVGKKRSRSEE   94 (253)
Q Consensus        21 Mr~IWSeEnKfqtWLkVE~ALAeAqaE-GI-P~~ai~~Ik~~a~---fDieRI~~~~~~~~ie~e~-~~~vaftr~~se~   94 (253)
                      |+.|||++++++.|++||+|++.++++ |+ |+++.++|.+...   +|++      +..+++..+ ||.+++=+.+.|.
T Consensus         1 ~~~~~s~~~~~~~~l~ve~A~a~~l~~~giip~~~a~~i~~~l~~~~~d~~------~~~~~~~~~~~~v~~~e~~L~~~   74 (381)
T cd01595           1 MRAIFSEENKLRTWLDVEAALAEAQAELGLIPKEAAEEIRAAADVFEIDAE------RIAEIEKETGHDVIAFVYALAEK   74 (381)
T ss_pred             ChhHhChHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHhhhcccCCHH------HHHHHHHHhCcCcHHHHHHHHHH
Confidence            688999999999999999999999999 96 8887777765543   2333      334567554 4449999999986


Q ss_pred             CCccCCC-ceeEEEecccccC
Q psy14320         95 PEDCRGE-EKVEVVLGGAGVD  114 (253)
Q Consensus        95 ~~~~~ge-e~~~v~~g~~~~~  114 (253)
                      .    |+ -.+|||+|-.--|
T Consensus        75 ~----g~~~~~~vH~g~S~nD   91 (381)
T cd01595          75 C----GEDAGEYVHFGATSQD   91 (381)
T ss_pred             h----hhHhhhHeecCcCHHH
Confidence            4    87 6999999987655

This group contains ASL, prokaryotic-type 3-carboxy-cis,cis-muconate cycloisomerase (pCMLE), and related proteins. These proteins are members of the Lyase class I family. Members of this family for the most part catalyze similar beta-elimination reactions in which a C-N or C-O bond is cleaved with the release of fumarate as one of the products. These proteins are active as tetramers. The four active sites of the homotetrameric enzyme are each formed by residues from three different subunits. ASL catalyzes two steps in the de novo purine biosynthesis: the conversion of 5-aminoimidazole-(N-succinylocarboxamide) ribotide (SAICAR) into 5-aminoimidazole-4-carboxamide ribotide (AICAR) and; the conversion of adenylsuccinate (SAMP) into adenosine monophosphate (AMP). pCMLE catalyzes the cyclization of 3-carboxy-cis,cis-muconate (3CM) to 4-carboxy-muconolactone, in the beta-ketoadipate pathway. ASL deficiency has been linked t

>KOG2700|consensus

Probab=97.81  E-value=4e-06  Score=82.29  Aligned_cols=98  Identities=37%  Similarity=0.535  Sum_probs=73.7

Q ss_pred             ccccccCCCCC-HHHHhcCCchhHHHHHHHHHHHHHHHHHc-CC---CCccccCccccccccccceeeeccccceeee-e
Q psy14320          8 YISPLSTRYAS-KEMQHNFSDMKKFTTWRQLWIYLAEAQQS-GF---RNNIYIDPKHNFTLEADRCTVVDSRLGVELE-R   81 (253)
Q Consensus         8 Y~sPMI~RYss-pEMr~IWSeEnKfqtWLkVE~ALAeAqaE-GI---P~~ai~~Ik~~a~fDieRI~~~~~~~~ie~e-~   81 (253)
                      |.+|+..||.+ ++|..|||+.+++.+|+++|..|++|.++ |+   |+.+++.++...+++....+.   .-+.|.- +
T Consensus         6 ~~~pls~ry~~~~~l~~~~s~~~~~~twr~lw~~lA~ae~~lgL~~itk~ai~e~~s~~~~e~~d~~~---l~~ee~r~~   82 (481)
T KOG2700|consen    6 YKSPLSGRYASISELNPIFSDRNKFSTWRRLWLWLAEAEKELGLTTITKEAIEEMKSSRDIENIDFTA---LSPEEGRYR   82 (481)
T ss_pred             CCCcccceeccccccchhhhhhhhhhhhhHHHHhhhhhhhcCCcccchHHHHHHHHhhccccccchhh---cChhhhhhc
Confidence            99999999998 99999999999999999999999999999 86   566788877754443333222   1112222 5


Q ss_pred             ccceeecccccCCCCccCCCceeEEEecccc
Q psy14320         82 QDDVGKKRSRSEEPEDCRGEEKVEVVLGGAG  112 (253)
Q Consensus        82 ~~~vaftr~~se~~~~~~gee~~~v~~g~~~  112 (253)
                      ||+.|---+.+|.   |.+-=+ -.|+|-.-
T Consensus        83 hdVmahvh~~~~~---cp~aag-iihlgats  109 (481)
T KOG2700|consen   83 HDVMAHVHSFGEL---CPIAAG-IIHLGATS  109 (481)
T ss_pred             ccHHHHHHHHHhh---cchhcc-eEEeeeee
Confidence            7777887888886   666666 67777654

>PF00206 Lyase_1: Lyase; InterPro: IPR022761 This entry represents the N-terminal region of lyase-1 family; PDB: 1DOF_C 1K62_B 1AOS_B 2VD6_D 2J91_B 1C3U_B 1C3C_A 3R6Y_C 3R6V_F 3R6Q_F

Probab=97.63  E-value=3.8e-07  Score=82.76  Aligned_cols=90  Identities=22%  Similarity=0.228  Sum_probs=58.1

Q ss_pred             CCC--CHHHHhcCCchhHHHHHHH-----HHHHHHHHHHc-CC-CCccccCcccccc-----ccccceeeecccccee--
Q psy14320         15 RYA--SKEMQHNFSDMKKFTTWRQ-----LWIYLAEAQQS-GF-RNNIYIDPKHNFT-----LEADRCTVVDSRLGVE--   78 (253)
Q Consensus        15 RYs--spEMr~IWSeEnKfqtWLk-----VE~ALAeAqaE-GI-P~~ai~~Ik~~a~-----fDieRI~~~~~~~~ie--   78 (253)
                      ||.  +++|..+||+.++++.|+.     +|+++++|+++ |+ |+++.+.|.+...     ++.+      ....|+  
T Consensus         2 r~~~~~~~~~~~~s~~~~~~~~l~~~~~~~e~a~~~a~a~~g~i~~~~a~~I~~a~~~i~~~~~~~------~~~~~~~~   75 (312)
T PF00206_consen    2 RYEVPTDEMYAIFSDRARFDFWLAEYDIRVEAALAKALAEAGIIPKEAADAIVKALEEILEDGDLD------DAFELDEI   75 (312)
T ss_dssp             EEEEETTHHHHHHHHHHHHHHHHHSHHHHHHHHHHHHHHHTTSSTHHHHHHHHHHHHHHHHHTCTH------GHHHHCSC
T ss_pred             CcCCchHHHHHHHCHHHHhCCEeeccHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHhhccc------cccchhhh
Confidence            555  8999999999999999999     99999999999 96 7665555543332     2222      112232  


Q ss_pred             -eeeccc-ee-ecccccCCCCccCC---CceeEEEecccccC
Q psy14320         79 -LERQDD-VG-KKRSRSEEPEDCRG---EEKVEVVLGGAGVD  114 (253)
Q Consensus        79 -~e~~~~-va-ftr~~se~~~~~~g---ee~~~v~~g~~~~~  114 (253)
                       ...|++ .+ ..+.++|    .+|   +..+|||||-.--|
T Consensus        76 ~~~~~~~~~~~l~~~~~e----~~~~~~~~~~~vH~G~Ts~D  113 (312)
T PF00206_consen   76 EEDIGHAVEANLNEVLGE----LLGEPPEAGGWVHYGRTSND  113 (312)
T ss_dssp             SSSHHHHHHHHHHHHHHH----HHTHSSGGGGGTTTT--HHH
T ss_pred             hccchhHHHHHHHHHhhh----hhhccccccccccCCCcHHH
Confidence             223444 33 3444443    234   78899999976544

...

>PRK02186 argininosuccinate lyase; Provisional

Probab=97.17  E-value=5.7e-05  Score=77.62  Aligned_cols=91  Identities=8%  Similarity=-0.119  Sum_probs=65.2

Q ss_pred             CCHHHHhcCC-------chhHHHHHHHHHHHHHHHHHc-CC-CCccccCccccccccccceeeeccccceeeeeccc-ee
Q psy14320         17 ASKEMQHNFS-------DMKKFTTWRQLWIYLAEAQQS-GF-RNNIYIDPKHNFTLEADRCTVVDSRLGVELERQDD-VG   86 (253)
Q Consensus        17 sspEMr~IWS-------eEnKfqtWLkVE~ALAeAqaE-GI-P~~ai~~Ik~~a~fDieRI~~~~~~~~ie~e~~~~-va   86 (253)
                      .+|+|++||+       ++++++.|+++|+|.+.++++ || |.++.+.|.+... .+..... . .+...-+.-|+ ++
T Consensus       417 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ah~~~l~~~gii~~~~a~~I~~~l~-~~~~~~~-~-~~~~~~~~~~~~~~  493 (887)
T PRK02186        417 LPPEAQAIVYGPGASEAPLAELDHLAAIDEAHLVMLGDTGIVAPERARPLLDAHR-RLRDAGF-A-PLLARPAPRGLYML  493 (887)
T ss_pred             CChhhhceecCCCcchhhhhhhHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHH-HHHHhHH-h-hCcCCCCCcchHHH
Confidence            4889999999       999999999999999999999 96 8887777766541 1111101 1 11111222234 88


Q ss_pred             ecccccCCCCccCC-CceeEEEecccccC
Q psy14320         87 KKRSRSEEPEDCRG-EEKVEVVLGGAGVD  114 (253)
Q Consensus        87 ftr~~se~~~~~~g-ee~~~v~~g~~~~~  114 (253)
                      +-+.+.|..    | +..+|+|+|-.--|
T Consensus       494 ~e~~L~~~~----g~~~~~~lH~grSrnD  518 (887)
T PRK02186        494 YEAYLIERL----GEDVGGVLQTARSRND  518 (887)
T ss_pred             HHHHHHHHh----ChhhhcccCccccHHH
Confidence            999998863    8 56899999987544

>PRK12308 bifunctional argininosuccinate lyase/N-acetylglutamate synthase; Provisional

Probab=96.79  E-value=0.00033  Score=69.49  Aligned_cols=96  Identities=15%  Similarity=0.075  Sum_probs=65.8

Q ss_pred             cCCCCC--HHHHhcCCchhHHHHHHHHH-----HHHHHHHHc-CC-CCccccCccccccccccceee-eccccceeeeec
Q psy14320         13 STRYAS--KEMQHNFSDMKKFTTWRQLW-----IYLAEAQQS-GF-RNNIYIDPKHNFTLEADRCTV-VDSRLGVELERQ   82 (253)
Q Consensus        13 I~RYss--pEMr~IWSeEnKfqtWLkVE-----~ALAeAqaE-GI-P~~ai~~Ik~~a~fDieRI~~-~~~~~~ie~e~~   82 (253)
                      ..||+.  .+--.+||+..+++.|+.+|     +|++.++++ || |+++.+.|.+...--..+... .....+.|.|..
T Consensus         5 ~~r~~~~~~~~~~~~~~~~~~~~~l~~e~i~~~~A~a~~l~~~Giip~~~a~~I~~~l~~~~~~~~~~~~~~~~~~~ed~   84 (614)
T PRK12308          5 GGRFSQAADTRFKQFNDSLRFDYRLAEQDIVGSIAWSKALLSVGVLSEEEQQKLELALNELKLEVMEDPEQILLSDAEDI   84 (614)
T ss_pred             ccCCCCcccHHHHHHhcCHHHHHHHHHHHHHHhHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHhcCCCCCCCCccccH
Confidence            357754  22334899999999999999     999999999 96 888877776554210001001 123344677754


Q ss_pred             cc-eeecccccCCCCccCCCceeEEEecccccC
Q psy14320         83 DD-VGKKRSRSEEPEDCRGEEKVEVVLGGAGVD  114 (253)
Q Consensus        83 ~~-vaftr~~se~~~~~~gee~~~v~~g~~~~~  114 (253)
                      |. |.  +.+.|.    +|+-.+|||+|-.--|
T Consensus        85 h~~ie--~~L~~~----~g~~~~~iH~g~S~nD  111 (614)
T PRK12308         85 HSWVE--QQLIGK----VGDLGKKLHTGRSRND  111 (614)
T ss_pred             HHHHH--HHHHHH----hcccccceecCCChhh
Confidence            44 77  777775    3877999999987655

>PRK06705 argininosuccinate lyase; Provisional

Probab=96.75  E-value=0.00025  Score=69.58  Aligned_cols=85  Identities=9%  Similarity=-0.041  Sum_probs=59.9

Q ss_pred             cCCchhHHHHHHHHHHHHHHHHHc-CC-CCccccCccccccccccceeeeccccceeeeeccceeecccccCCCCccCC-
Q psy14320         24 NFSDMKKFTTWRQLWIYLAEAQQS-GF-RNNIYIDPKHNFTLEADRCTVVDSRLGVELERQDDVGKKRSRSEEPEDCRG-  100 (253)
Q Consensus        24 IWSeEnKfqtWLkVE~ALAeAqaE-GI-P~~ai~~Ik~~a~fDieRI~~~~~~~~ie~e~~~~vaftr~~se~~~~~~g-  100 (253)
                      -+.++++++.|+++|+|.+.++++ || |.++.+.|.+... .+..+..  ..+.+..+.||.+.+-.+..+.   +.| 
T Consensus        31 ~~~~~~~~~~~l~ve~Aha~~l~~~GiIp~e~a~~I~~al~-~~~~~~~--~~l~~~~~~edv~~~ie~~l~~---~~G~  104 (502)
T PRK06705         31 NFQRNYLLKDMFQVHKAHIVMLTEENLMKKEEAKFILHALK-KVEEIPE--EQLLYTEQHEDLFFLVEHLISQ---EAKS  104 (502)
T ss_pred             chhHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHH-Hhhhccc--CccccCCCCCchHHHHHHHHHH---hcCc
Confidence            456789999999999999999999 96 8888777765542 1111111  1222233356668888888775   567 


Q ss_pred             CceeEEEecccccC
Q psy14320        101 EEKVEVVLGGAGVD  114 (253)
Q Consensus       101 ee~~~v~~g~~~~~  114 (253)
                      +..+|+|+|-.--|
T Consensus       105 ~~g~~lH~GrSrnD  118 (502)
T PRK06705        105 DFVSNMHIGRSRND  118 (502)
T ss_pred             hhhccccCCCCHhh
Confidence            57999999987655

>PRK04833 argininosuccinate lyase; Provisional

Probab=96.56  E-value=0.00041  Score=67.03  Aligned_cols=97  Identities=11%  Similarity=0.134  Sum_probs=63.8

Q ss_pred             ccCCCCCH--HHHhcCCchhHHHHHHH---HH--HHHHHHHHc-CC-CCccccCcccccc-ccccceeeeccccceeeee
Q psy14320         12 LSTRYASK--EMQHNFSDMKKFTTWRQ---LW--IYLAEAQQS-GF-RNNIYIDPKHNFT-LEADRCTVVDSRLGVELER   81 (253)
Q Consensus        12 MI~RYssp--EMr~IWSeEnKfqtWLk---VE--~ALAeAqaE-GI-P~~ai~~Ik~~a~-fDieRI~~~~~~~~ie~e~   81 (253)
                      +..||+.+  ++..+|++..+++.|+.   ||  +|.+.++++ |+ |.++.+.|.+... +. +.... |-..-++.+.
T Consensus         4 ~~~r~~~~~~~~~~~~~~~~~~d~~l~~~~i~~~~Aha~~l~e~Gii~~~~a~~I~~al~~i~-~~~~~-~~~~~~~~~~   81 (455)
T PRK04833          4 WGGRFTQAADQRFKQFNDSLRFDYRLAEQDIVGSVAWSKALVTVGVLTADEQQQLEEALNELL-EEVRA-NPQQILASDA   81 (455)
T ss_pred             cccccCCcchHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHH-hhhhc-CCcccCCCCC
Confidence            34599988  89999999999999999   99  999999999 96 8887777654432 10 01000 0011122222


Q ss_pred             ccceeecc-cccCCCCccCCCceeEEEecccccC
Q psy14320         82 QDDVGKKR-SRSEEPEDCRGEEKVEVVLGGAGVD  114 (253)
Q Consensus        82 ~~~vaftr-~~se~~~~~~gee~~~v~~g~~~~~  114 (253)
                      .|...+-. .+.|.    +|+-.+|+|+|-.--|
T Consensus        82 edv~~~ie~~L~~~----~g~~g~~lH~grSrnD  111 (455)
T PRK04833         82 EDIHSWVEGKLIDK----VGDLGKKLHTGRSRND  111 (455)
T ss_pred             chHHHHHHHHHHHH----hccccCcccCCCCchh
Confidence            23444444 45554    4876889999987655

>cd01334 Lyase_I Lyase class I family; a group of proteins which catalyze similar beta-elimination reactions

Probab=95.67  E-value=0.0015  Score=59.76  Aligned_cols=75  Identities=16%  Similarity=0.002  Sum_probs=56.7

Q ss_pred             HHHHHHHHHHHHHHHHc-CC-CCccccCcccccc---ccccceeeeccccceeeeeccc-eeecccccCCCCccCCCc-e
Q psy14320         31 FTTWRQLWIYLAEAQQS-GF-RNNIYIDPKHNFT---LEADRCTVVDSRLGVELERQDD-VGKKRSRSEEPEDCRGEE-K  103 (253)
Q Consensus        31 fqtWLkVE~ALAeAqaE-GI-P~~ai~~Ik~~a~---fDieRI~~~~~~~~ie~e~~~~-vaftr~~se~~~~~~gee-~  103 (253)
                      ++.|+.+|+|++.++++ |+ |+++.+.|.+...   .|.++..     .+++.+..|+ .+|-+.+.|.    +|++ .
T Consensus         1 ~~~~l~ve~A~a~al~~~Gli~~~~a~~I~~~l~~~~~~~~~~~-----~~~~~~~~~~~~~~e~~l~~~----~g~~~~   71 (325)
T cd01334           1 IRADLQVEKAHAKALAELGLLPKEAAEAILAALDEILEGIAADQ-----VEQEGSGTHDVMAVEEVLAER----AGELNG   71 (325)
T ss_pred             CHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHhCccccC-----eeeCCCCccHHHHHHHHHHHH----hccccC
Confidence            46799999999999999 96 8887777765543   2333221     3466666666 9999999997    4998 9


Q ss_pred             eEEEecccccC
Q psy14320        104 VEVVLGGAGVD  114 (253)
Q Consensus       104 ~~v~~g~~~~~  114 (253)
                      .|||+|-.--|
T Consensus        72 ~~lH~G~S~nD   82 (325)
T cd01334          72 GYVHTGRSSND   82 (325)
T ss_pred             CCCccCCCCcc
Confidence            99999987665

The Lyase class I family contains class II fumarase, aspartase, adenylosuccinate lyase (ASL), argininosuccinate lyase (ASAL), prokaryotic-type 3-carboxy-cis,cis-muconate cycloisomerase (pCMLE), and related proteins. It belongs to the Lyase_I superfamily. Proteins of this family for the most part catalyze similar beta-elimination reactions in which a C-N or C-O bond is cleaved with the release of fumarate as one of the products. These proteins are active as tetramers. The four active sites of the homotetrameric enzyme are each formed by residues from three different subunits.

>cd01357 Aspartase Aspartase

Probab=95.55  E-value=0.0025  Score=61.69  Aligned_cols=100  Identities=16%  Similarity=0.141  Sum_probs=63.8

Q ss_pred             ccccccCCCCCHHHH--hcC------CchhHHHHHHHHHHHHHHHHHc-CC-CCccccCcccccc-c---cc-cceeeec
Q psy14320          8 YISPLSTRYASKEMQ--HNF------SDMKKFTTWRQLWIYLAEAQQS-GF-RNNIYIDPKHNFT-L---EA-DRCTVVD   72 (253)
Q Consensus         8 Y~sPMI~RYsspEMr--~IW------SeEnKfqtWLkVE~ALAeAqaE-GI-P~~ai~~Ik~~a~-f---Di-eRI~~~~   72 (253)
                      ..-|-.--|+-.-++  ..|      .++++++.|+++|+|+++++++ |+ |.++.+.|.+... +   .+ +.+.+ +
T Consensus        10 ~~~~~~~~~g~~t~~~~~~~~~~~~~~d~~~i~~~l~ve~A~a~al~~~Giip~~~a~~I~~al~~i~~~~~~d~~~~-~   88 (450)
T cd01357          10 REVPADAYYGIQTLRALENFPISGLKIHPELIRALAMVKKAAALANAELGLLDEEKAEAIVKACDEIIAGKLHDQFVV-D   88 (450)
T ss_pred             cCCcccccchHHHHHHHHcCCCCCCCcCHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHhccccCCCcc-c
Confidence            344544556655566  334      3679999999999999999999 95 8887777766542 1   12 22222 4


Q ss_pred             cccceeeee----ccc-eeecccccCCCCccCCCc-eeE--------EEecccccC
Q psy14320         73 SRLGVELER----QDD-VGKKRSRSEEPEDCRGEE-KVE--------VVLGGAGVD  114 (253)
Q Consensus        73 ~~~~ie~e~----~~~-vaftr~~se~~~~~~gee-~~~--------v~~g~~~~~  114 (253)
                      ...+.+.+.    .|+ |++- . +|.    +|++ .+|        ||+|-.--|
T Consensus        89 ~~~~~~~~~~~~~~~~vi~~~-~-~e~----~g~~~g~~~~~h~~~~vH~GrSrnD  138 (450)
T cd01357          89 VIQGGAGTSTNMNANEVIANR-A-LEL----LGHEKGEYQYVHPNDHVNMSQSTND  138 (450)
T ss_pred             hhhccccchhhhhHhHHHHHH-H-HHH----hCccccCCcccCCcccccCCCChHh
Confidence            444455554    444 6665 3 664    3744 778        889976544

This subgroup contains Escherichia coli aspartase (L-aspartate ammonia-lyase), Bacillus aspartase and related proteins. It is a member of the Lyase class I family, which includes both aspartase (L-aspartate ammonia-lyase) and fumarase class II enzymes. Members of this family for the most part catalyze similar beta-elimination reactions in which a C-N or C-O bond is cleaved with the release of fumarate as one of the products. These proteins are active as tetramers. The four active sites of the homotetrameric enzyme are each formed by residues from three different subunits. Aspartase catalyzes the reversible deamination of aspartic acid.

>cd01359 Argininosuccinate_lyase Argininosuccinate lyase (argininosuccinase, ASAL)

Probab=95.10  E-value=0.0024  Score=60.88  Aligned_cols=77  Identities=18%  Similarity=0.103  Sum_probs=57.5

Q ss_pred             chhHHHHHHHHHHHHHHHHHc-CC-CCccccCccccc-----cccccceeeeccccceeeeeccc-eeecccccCCCCcc
Q psy14320         27 DMKKFTTWRQLWIYLAEAQQS-GF-RNNIYIDPKHNF-----TLEADRCTVVDSRLGVELERQDD-VGKKRSRSEEPEDC   98 (253)
Q Consensus        27 eEnKfqtWLkVE~ALAeAqaE-GI-P~~ai~~Ik~~a-----~fDieRI~~~~~~~~ie~e~~~~-vaftr~~se~~~~~   98 (253)
                      +++.++.|+.||+|++.++++ |+ |.++.+.|.+..     .++.+++.+       ..+..|. .++-+.+.|.+   
T Consensus         5 d~~~~~~~~~ve~A~a~al~~~Gii~~~~a~~I~~al~~~~~~~~~~~~~~-------~~~~~~~~~~~e~~l~~~~---   74 (435)
T cd01359           5 DRRLFEEDIAGSIAHAVMLAEQGILTEEEAAKILAGLAKIRAEIEAGAFEL-------DPEDEDIHMAIERRLIERI---   74 (435)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHhhcccCCccC-------CCCCCcHHHHHHHHHHHHH---
Confidence            578899999999999999999 96 888777776554     234445444       2255566 88888887753   


Q ss_pred             CCCceeEEEecccccC
Q psy14320         99 RGEEKVEVVLGGAGVD  114 (253)
Q Consensus        99 ~gee~~~v~~g~~~~~  114 (253)
                       |+..+|||+|-.--|
T Consensus        75 -g~~~~~iH~G~SsnD   89 (435)
T cd01359          75 -GDVGGKLHTGRSRND   89 (435)
T ss_pred             -HHHHhhhhccCCHHh
Confidence             777889999987655

This group contains ASAL and related proteins. It is a member of the Lyase class I family. Members of this family for the most part catalyze similar beta-elimination reactions in which a C-N or C-O bond is cleaved with the release of fumarate as one of the products. These proteins are active as tetramers. The four active sites of the homotetrameric enzyme are each formed by residues from three different subunits. ASAL is a cytosolic enzyme which catalyzes the reversible breakdown of argininosuccinate to arginine and fumarate during arginine biosynthesis. In ureotelic species ASAL also catalyzes a reaction involved in the production of urea. Included in this group are the major soluble avian eye lens proteins from duck, delta 1 and delta 2 crystallin. Of these two isoforms only delta 2 has retained ASAL activity. These crystallins may have evolved by, gene recruitment of ASAL followed by gene duplication.

>TIGR00979 fumC_II fumarate hydratase, class II

Probab=94.31  E-value=0.0096  Score=58.02  Aligned_cols=81  Identities=11%  Similarity=-0.028  Sum_probs=51.4

Q ss_pred             hhHHHHHHHHHHHHHHHHHc-CC-CCccccCcccccc-cccccee--eeccccceeeee------ccceeecccccCCCC
Q psy14320         28 MKKFTTWRQLWIYLAEAQQS-GF-RNNIYIDPKHNFT-LEADRCT--VVDSRLGVELER------QDDVGKKRSRSEEPE   96 (253)
Q Consensus        28 EnKfqtWLkVE~ALAeAqaE-GI-P~~ai~~Ik~~a~-fDieRI~--~~~~~~~ie~e~------~~~vaftr~~se~~~   96 (253)
                      ..-++.|++||+|++.|+++ |+ |+++.+.|.+... +.-....  .+.+..+.+..+      |+.|+|  .+.|.  
T Consensus        39 ~~~i~a~~~ve~A~a~a~~~~Giip~~~a~~I~~a~~~i~~~~~~~~~~~~~~~~~~~~~~~m~~~~via~--~l~e~--  114 (458)
T TIGR00979        39 LELIHAFAILKKAAAIVNEDLGKLDAKKADAIVQAADEILAGKLDDHFPLVVWQTGSGTQSNMNVNEVIAN--RAIEL--  114 (458)
T ss_pred             HHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHhccccCCCceecccccccccccccHHHHHHH--HHHHH--
Confidence            35688999999999999999 96 8887777765542 1000110  011222234333      666988  56664  


Q ss_pred             ccCCCc---eeEEE------ecccccC
Q psy14320         97 DCRGEE---KVEVV------LGGAGVD  114 (253)
Q Consensus        97 ~~~gee---~~~v~------~g~~~~~  114 (253)
                        +|+|   ++|||      ||-.--|
T Consensus       115 --~g~~~g~~~~vH~~d~vn~G~S~nD  139 (458)
T TIGR00979       115 --LGGKLGSKQPVHPNDHVNKSQSSND  139 (458)
T ss_pred             --cCcccCCCceeCCCCCCCCCCCccc
Confidence              4654   68999      8987655

Putative fumarases from several species (Mycobacterium tuberculosis, Streptomyces coelicolor, Pseudomonas aeruginosa) branch deeply, although within the same branch of a phylogenetic tree rooted by aspartate ammonia-lyase sequences, and score between the trusted and noise cutoffs.

>cd01362 Fumarase_classII Class II fumarases

Probab=92.77  E-value=0.022  Score=55.38  Aligned_cols=34  Identities=12%  Similarity=-0.059  Sum_probs=28.7

Q ss_pred             hhHHHHHHHHHHHHHHHHHc-CC-CCccccCccccc
Q psy14320         28 MKKFTTWRQLWIYLAEAQQS-GF-RNNIYIDPKHNF   61 (253)
Q Consensus        28 EnKfqtWLkVE~ALAeAqaE-GI-P~~ai~~Ik~~a   61 (253)
                      ..+++.|++||+|++.++++ |+ |.++.+.|.+..
T Consensus        38 ~~~i~~~l~ve~A~a~al~~~GiIp~~~a~~I~~al   73 (455)
T cd01362          38 RELIRALGLLKKAAAQANAELGLLDEEKADAIVQAA   73 (455)
T ss_pred             HHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHH
Confidence            57899999999999999999 96 888777775543

This subgroup contains Escherichia coli fumarase C, human mitochondrial fumarase, and related proteins. It is a member of the Lyase class I family. Members of this family for the most part catalyze similar beta-elimination reactions in which a C-N or C-O bond is cleaved with the release of fumarate as one of the products. These proteins are active as tetramers. The four active sites of the homotetrameric enzyme are each formed by residues from three different subunits. Fumarase catalyzes the reversible hydration/dehydration of fumarate to L-malate during the Krebs cycle.

>PRK00485 fumC fumarate hydratase; Reviewed

Probab=91.82  E-value=0.033  Score=54.21  Aligned_cols=35  Identities=9%  Similarity=-0.125  Sum_probs=29.9

Q ss_pred             chhHHHHHHHHHHHHHHHHHc-CC-CCccccCccccc
Q psy14320         27 DMKKFTTWRQLWIYLAEAQQS-GF-RNNIYIDPKHNF   61 (253)
Q Consensus        27 eEnKfqtWLkVE~ALAeAqaE-GI-P~~ai~~Ik~~a   61 (253)
                      +.++++.|++||+|++.++++ |+ |+++.+.|.+..
T Consensus        41 ~~~~~~~~l~ve~A~a~al~~~Giip~~~a~~I~~al   77 (464)
T PRK00485         41 PRELIRALALLKKAAARVNAELGLLDAEKADAIVAAA   77 (464)
T ss_pred             CHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHH
Confidence            478999999999999999999 96 888777776544

>PRK13353 aspartate ammonia-lyase; Provisional

Probab=91.55  E-value=0.037  Score=54.11  Aligned_cols=81  Identities=17%  Similarity=0.112  Sum_probs=51.9

Q ss_pred             chhHHHHHHHHHHHHHHHHHc-CC-CCccccCcccccc-c---cc-cceeeeccccceeeee----ccc-eeecccccCC
Q psy14320         27 DMKKFTTWRQLWIYLAEAQQS-GF-RNNIYIDPKHNFT-L---EA-DRCTVVDSRLGVELER----QDD-VGKKRSRSEE   94 (253)
Q Consensus        27 eEnKfqtWLkVE~ALAeAqaE-GI-P~~ai~~Ik~~a~-f---Di-eRI~~~~~~~~ie~e~----~~~-vaftr~~se~   94 (253)
                      +.++++.|++||+|++.++++ |+ |.++.+.|.+... +   .+ +.+. ++...+.+.+.    .|+ |+  +.+.|.
T Consensus        42 ~~~~i~a~~~ve~A~a~~l~~~Glip~~~a~~I~~al~~i~~~~~~d~f~-~~~~~~~~~~~~~~n~~~vi~--~~l~e~  118 (473)
T PRK13353         42 HPELIRAFAQVKKAAALANADLGLLPRRIAEAIVQACDEILAGKLHDQFI-VDPIQGGAGTSTNMNANEVIA--NRALEL  118 (473)
T ss_pred             CHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHhccccCCCC-cchhhccccchhcchhhHHHH--HHHHHH
Confidence            368999999999999999999 95 8887777765442 1   11 1111 13333333343    333 66  666665


Q ss_pred             CCccCCCc-eeE--------EEecccccC
Q psy14320         95 PEDCRGEE-KVE--------VVLGGAGVD  114 (253)
Q Consensus        95 ~~~~~gee-~~~--------v~~g~~~~~  114 (253)
                          +|++ -+|        ||+|-.--|
T Consensus       119 ----~g~~~g~~~~~hp~d~vH~GrSrnD  143 (473)
T PRK13353        119 ----LGGEKGDYHYVSPNDHVNMAQSTND  143 (473)
T ss_pred             ----hCccccCCccCCcccCccCCCChhh
Confidence                4655 454        999987655

>TIGR00839 aspA aspartate ammonia-lyase

Probab=90.18  E-value=0.055  Score=53.08  Aligned_cols=36  Identities=11%  Similarity=-0.164  Sum_probs=30.5

Q ss_pred             CchhHHHHHHHHHHHHHHHHHc-CC-CCccccCccccc
Q psy14320         26 SDMKKFTTWRQLWIYLAEAQQS-GF-RNNIYIDPKHNF   61 (253)
Q Consensus        26 SeEnKfqtWLkVE~ALAeAqaE-GI-P~~ai~~Ik~~a   61 (253)
                      ..+++++.|++||+|++.++++ |+ |.++.+.|.+..
T Consensus        38 ~~~~~i~~~l~ve~A~a~al~e~GiIp~~~a~~I~~al   75 (468)
T TIGR00839        38 DIPEFVRGMVMVKKAAALANKELGTIPESIANAIVAAC   75 (468)
T ss_pred             chHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHH
Confidence            3589999999999999999999 95 888777776554

Fumarate hydratase scores as high as 570 bits against this model.

>PRK12273 aspA aspartate ammonia-lyase; Provisional

Probab=90.16  E-value=0.059  Score=52.73  Aligned_cols=80  Identities=14%  Similarity=0.053  Sum_probs=51.6

Q ss_pred             hhHHHHHHHHHHHHHHHHHc-CC-CCccccCcccccc-c---cc-cceeeeccccceeeee-----ccceeecccccCCC
Q psy14320         28 MKKFTTWRQLWIYLAEAQQS-GF-RNNIYIDPKHNFT-L---EA-DRCTVVDSRLGVELER-----QDDVGKKRSRSEEP   95 (253)
Q Consensus        28 EnKfqtWLkVE~ALAeAqaE-GI-P~~ai~~Ik~~a~-f---Di-eRI~~~~~~~~ie~e~-----~~~vaftr~~se~~   95 (253)
                      +++++.|+++|+|++.++++ |+ |.++.+.|.+... +   .. +.+. ++...+.+.+.     |+.++|- .. |. 
T Consensus        45 ~~~~~~~l~ve~A~a~al~~~Gii~~~~a~~I~~al~~i~~~~~~~~~~-~~~~~~~~~e~~~~~v~~~i~~~-~~-e~-  120 (472)
T PRK12273         45 PELIRALAMVKKAAALANKELGLLDEEKADAIVAACDEILAGKLHDQFV-VDVIQGGAGTSTNMNANEVIANR-AL-EL-  120 (472)
T ss_pred             HHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHhccccCCcc-cchhhccccchhhhHHHHHHHHH-HH-HH-
Confidence            78999999999999999999 95 8887666655432 1   00 1121 23444556664     3336776 44 43 


Q ss_pred             CccCCC-ceeE--EE------ecccccC
Q psy14320         96 EDCRGE-EKVE--VV------LGGAGVD  114 (253)
Q Consensus        96 ~~~~ge-e~~~--v~------~g~~~~~  114 (253)
                         +|+ -..|  ||      +|-.--|
T Consensus       121 ---~g~~~~~~~~vHp~d~v~~GrSrnD  145 (472)
T PRK12273        121 ---LGHEKGEYQYVHPNDHVNMSQSTND  145 (472)
T ss_pred             ---hCcccCCcceeCCCCCCCCCCCchH
Confidence               263 3556  99      9877655

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	253
4flc_A	487	Structural And Biochemical Characterization Of Huma		6e-09
4flc_A	487	Structural And Biochemical Characterization Of Huma		8e-09
4ffx_A	487	Structural And Biochemical Characterization Of Huma		6e-09
4ffx_A	487	Structural And Biochemical Characterization Of Huma		8e-09
2j91_A	503	Crystal Structure Of Human Adenylosuccinate Lyase I		6e-09
2j91_A	503	Crystal Structure Of Human Adenylosuccinate Lyase I		8e-09
2vd6_A	503	Human Adenylosuccinate Lyase In Complex With Its Su		6e-09
2vd6_A	503	Human Adenylosuccinate Lyase In Complex With Its Su		9e-09

>pdb|4FLC|A Chain A, Structural And Biochemical Characterization Of Human Adenylosuccinate Lyase (Adsl) And The R303c Adsl Deficiency Associated Mutation Length = 487

Iteration: 1
 Score = 57.8 bits (138), Expect = 6e-09,   Method: Compositional matrix adjust.
 Identities = 26/40 (65%), Positives = 32/40 (80%)
Query: 8  YISPLSTRYASKEMQHNFSDMKKFTTWRQLWIYLAEAQQS 47
          Y SPL++RYAS EM   FSD  KF TWRQLW++LAEA+Q+
Sbjct: 16 YRSPLASRYASPEMCFVFSDRYKFRTWRQLWLWLAEAEQT 55

>pdb|4FLC|A Chain A, Structural And Biochemical Characterization Of Human Adenylosuccinate Lyase (Adsl) And The R303c Adsl Deficiency Associated Mutation Length = 487

Iteration: 1
 Score = 57.4 bits (137), Expect = 8e-09,   Method: Compositional matrix adjust.
 Identities = 26/39 (66%), Positives = 31/39 (79%)
Query: 212 YISPLSTRYASKEMQHNFSDMKKFTTWRQLWIYLAEAQQ 250
           Y SPL++RYAS EM   FSD  KF TWRQLW++LAEA+Q
Sbjct: 16  YRSPLASRYASPEMCFVFSDRYKFRTWRQLWLWLAEAEQ 54

>pdb|4FFX|A Chain A, Structural And Biochemical Characterization Of Human Adenylosuccinate Lyase (Adsl) And The R303c Adsl Deficiency Associated Mutation Length = 487

Iteration: 1
 Score = 57.8 bits (138), Expect = 6e-09,   Method: Compositional matrix adjust.
 Identities = 26/40 (65%), Positives = 32/40 (80%)
Query: 8  YISPLSTRYASKEMQHNFSDMKKFTTWRQLWIYLAEAQQS 47
          Y SPL++RYAS EM   FSD  KF TWRQLW++LAEA+Q+
Sbjct: 16 YRSPLASRYASPEMCFVFSDRYKFRTWRQLWLWLAEAEQT 55

>pdb|4FFX|A Chain A, Structural And Biochemical Characterization Of Human Adenylosuccinate Lyase (Adsl) And The R303c Adsl Deficiency Associated Mutation Length = 487

Iteration: 1
 Score = 57.4 bits (137), Expect = 8e-09,   Method: Compositional matrix adjust.
 Identities = 26/39 (66%), Positives = 31/39 (79%)
Query: 212 YISPLSTRYASKEMQHNFSDMKKFTTWRQLWIYLAEAQQ 250
           Y SPL++RYAS EM   FSD  KF TWRQLW++LAEA+Q
Sbjct: 16  YRSPLASRYASPEMCFVFSDRYKFRTWRQLWLWLAEAEQ 54

>pdb|2J91|A Chain A, Crystal Structure Of Human Adenylosuccinate Lyase In Complex With Amp Length = 503

Iteration: 1
 Score = 57.8 bits (138), Expect = 6e-09,   Method: Compositional matrix adjust.
 Identities = 26/40 (65%), Positives = 32/40 (80%)
Query: 8  YISPLSTRYASKEMQHNFSDMKKFTTWRQLWIYLAEAQQS 47
          Y SPL++RYAS EM   FSD  KF TWRQLW++LAEA+Q+
Sbjct: 35 YRSPLASRYASPEMCFVFSDRYKFRTWRQLWLWLAEAEQT 74

>pdb|2J91|A Chain A, Crystal Structure Of Human Adenylosuccinate Lyase In Complex With Amp Length = 503

Iteration: 1
 Score = 57.4 bits (137), Expect = 8e-09,   Method: Compositional matrix adjust.
 Identities = 26/39 (66%), Positives = 31/39 (79%)
Query: 212 YISPLSTRYASKEMQHNFSDMKKFTTWRQLWIYLAEAQQ 250
           Y SPL++RYAS EM   FSD  KF TWRQLW++LAEA+Q
Sbjct: 35  YRSPLASRYASPEMCFVFSDRYKFRTWRQLWLWLAEAEQ 73

>pdb|2VD6|A Chain A, Human Adenylosuccinate Lyase In Complex With Its Substrate N6-(1,2-Dicarboxyethyl)-Amp, And Its Products Amp And Fumarate. Length = 503

Iteration: 1
 Score = 57.8 bits (138), Expect = 6e-09,   Method: Compositional matrix adjust.
 Identities = 26/40 (65%), Positives = 32/40 (80%)
Query: 8  YISPLSTRYASKEMQHNFSDMKKFTTWRQLWIYLAEAQQS 47
          Y SPL++RYAS EM   FSD  KF TWRQLW++LAEA+Q+
Sbjct: 35 YRSPLASRYASPEMCFVFSDRYKFRTWRQLWLWLAEAEQT 74

>pdb|2VD6|A Chain A, Human Adenylosuccinate Lyase In Complex With Its Substrate N6-(1,2-Dicarboxyethyl)-Amp, And Its Products Amp And Fumarate. Length = 503

Iteration: 1
 Score = 57.0 bits (136), Expect = 9e-09,   Method: Compositional matrix adjust.
 Identities = 26/39 (66%), Positives = 31/39 (79%)
Query: 212 YISPLSTRYASKEMQHNFSDMKKFTTWRQLWIYLAEAQQ 250
           Y SPL++RYAS EM   FSD  KF TWRQLW++LAEA+Q
Sbjct: 35  YRSPLASRYASPEMCFVFSDRYKFRTWRQLWLWLAEAEQ 73

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	253
2j91_A	503	Adenylosuccinate lyase; disease mutation, adenylos	2e-15
2j91_A	503	Adenylosuccinate lyase; disease mutation, adenylos	3e-15
1yis_A	478	Adenylosuccinate lyase; structural genomics, PSI,	2e-13
1yis_A	478	Adenylosuccinate lyase; structural genomics, PSI,	2e-13
1dof_A	403	Adenylosuccinate lyase; purine biosynthesis; 2.10A	1e-09
1dof_A	403	Adenylosuccinate lyase; purine biosynthesis; 2.10A	1e-09
2pfm_A	444	Adenylosuccinate lyase; PURB, purine biosynthesis,	7e-04
2pfm_A	444	Adenylosuccinate lyase; PURB, purine biosynthesis,	7e-04

>2j91_A Adenylosuccinate lyase; disease mutation, adenylosuccinase, succino AMP-lyase, purin biosynthesis, adenylosuccinase DEFI AMP, ADSL, saicar, purine; HET: AMP; 1.8A {Homo sapiens} PDB: 2vd6_A* Length = 503

 Score = 74.2 bits (183), Expect = 2e-15
 Identities = 26/52 (50%), Positives = 33/52 (63%)

Query: 199 TSTSSNMDHEHCKYISPLSTRYASKEMQHNFSDMKKFTTWRQLWIYLAEAQQ 250
           +  +         Y SPL++RYAS EM   FSD  KF TWRQLW++LAEA+Q
Sbjct: 22  SMAAGGDHGSPDSYRSPLASRYASPEMCFVFSDRYKFRTWRQLWLWLAEAEQ 73

>2j91_A Adenylosuccinate lyase; disease mutation, adenylosuccinase, succino AMP-lyase, purin biosynthesis, adenylosuccinase DEFI AMP, ADSL, saicar, purine; HET: AMP; 1.8A {Homo sapiens} PDB: 2vd6_A* Length = 503

 Score = 73.5 bits (181), Expect = 3e-15
 Identities = 26/43 (60%), Positives = 31/43 (72%)

Query: 4  EHCKYISPLSTRYASKEMQHNFSDMKKFTTWRQLWIYLAEAQQ 46
              Y SPL++RYAS EM   FSD  KF TWRQLW++LAEA+Q
Sbjct: 31 SPDSYRSPLASRYASPEMCFVFSDRYKFRTWRQLWLWLAEAEQ 73

>1yis_A Adenylosuccinate lyase; structural genomics, PSI, P structure initiative, southeast collaboratory for structura genomics, secsg; 2.40A {Caenorhabditis elegans} Length = 478

 Score = 68.5 bits (168), Expect = 2e-13
 Identities = 20/44 (45%), Positives = 26/44 (59%), Gaps = 1/44 (2%)

Query: 4  EHCKYISPLSTRYASKE-MQHNFSDMKKFTTWRQLWIYLAEAQQ 46
             K+ S LSTRY     +    S+  K T WRQLWI+LAEA++
Sbjct: 3  SEDKFESVLSTRYCKNSPLVSILSETNKATLWRQLWIWLAEAEK 46

>1yis_A Adenylosuccinate lyase; structural genomics, PSI, P structure initiative, southeast collaboratory for structura genomics, secsg; 2.40A {Caenorhabditis elegans} Length = 478

 Score = 68.5 bits (168), Expect = 2e-13
 Identities = 20/44 (45%), Positives = 26/44 (59%), Gaps = 1/44 (2%)

Query: 208 EHCKYISPLSTRYASKE-MQHNFSDMKKFTTWRQLWIYLAEAQQ 250
              K+ S LSTRY     +    S+  K T WRQLWI+LAEA++
Sbjct: 3   SEDKFESVLSTRYCKNSPLVSILSETNKATLWRQLWIWLAEAEK 46

>1dof_A Adenylosuccinate lyase; purine biosynthesis; 2.10A {Pyrobaculum aerophilum} SCOP: a.127.1.1 Length = 403

 Score = 56.5 bits (137), Expect = 1e-09
 Identities = 9/38 (23%), Positives = 19/38 (50%)

Query: 8  YISPLSTRYASKEMQHNFSDMKKFTTWRQLWIYLAEAQ 45
          ++SP   RY S+E++  F++      + ++   L  A 
Sbjct: 2  HVSPFDWRYGSEEIRRLFTNEAIINAYLEVERALVCAL 39

>1dof_A Adenylosuccinate lyase; purine biosynthesis; 2.10A {Pyrobaculum aerophilum} SCOP: a.127.1.1 Length = 403

 Score = 56.5 bits (137), Expect = 1e-09
 Identities = 9/38 (23%), Positives = 19/38 (50%)

Query: 212 YISPLSTRYASKEMQHNFSDMKKFTTWRQLWIYLAEAQ 249
           ++SP   RY S+E++  F++      + ++   L  A 
Sbjct: 2   HVSPFDWRYGSEEIRRLFTNEAIINAYLEVERALVCAL 39

>2pfm_A Adenylosuccinate lyase; PURB, purine biosynthesis, B anthracis; 2.00A {Bacillus anthracis} PDB: 1f1o_A 2x75_A* Length = 444

 Score = 39.2 bits (92), Expect = 7e-04
 Identities = 10/35 (28%), Positives = 17/35 (48%)

Query: 11 PLSTRYASKEMQHNFSDMKKFTTWRQLWIYLAEAQ 45
           + +RY   EM   +++  KF  W ++ I   EA 
Sbjct: 9  HMISRYTRPEMGAIWTEENKFKAWLEVEILACEAW 43

>2pfm_A Adenylosuccinate lyase; PURB, purine biosynthesis, B anthracis; 2.00A {Bacillus anthracis} PDB: 1f1o_A 2x75_A* Length = 444

 Score = 39.2 bits (92), Expect = 7e-04
 Identities = 10/35 (28%), Positives = 17/35 (48%)

Query: 215 PLSTRYASKEMQHNFSDMKKFTTWRQLWIYLAEAQ 249
            + +RY   EM   +++  KF  W ++ I   EA 
Sbjct: 9   HMISRYTRPEMGAIWTEENKFKAWLEVEILACEAW 43

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	253
4eei_A	438	Adenylosuccinate lyase; structural genomics, niaid	99.54
2j91_A	503	Adenylosuccinate lyase; disease mutation, adenylos	99.42
1yis_A	478	Adenylosuccinate lyase; structural genomics, PSI,	99.36
2fel_A	359	3-carboxy-CIS,CIS-muconate lactonizing enzyme; bio	99.02
2pfm_A	444	Adenylosuccinate lyase; PURB, purine biosynthesis,	99.01
1dof_A	403	Adenylosuccinate lyase; purine biosynthesis; 2.10A	98.92
3c8t_A	451	Fumarate lyase; structural genomics, PSI-2, protei	98.88
1re5_A	450	3-carboxy-CIS,CIS-muconate cycloisomerase; homotet	98.87
1c3c_A	429	Protein (adenylosuccinate lyase); purine biosynthe	98.86
3bhg_A	459	Adenylosuccinate lyase; structural G PSI-2, protei	98.82
1q5n_A	454	3-carboxy-CIS,CIS-muconate cycloisomerase; CMLE, a	98.77
2qga_B	465	Adenylosuccinate lyase; malaria, PV003765, SGC, st	98.66
2j91_A	503	Adenylosuccinate lyase; disease mutation, adenylos	98.28
2ptr_A	462	Adenylosuccinate lyase; mutant-substrate complex;	98.25
1k7w_A	468	Delta 2 crystallin; eye lens protein, argininosucc	97.16
1vdk_A	466	Fumarase C, fumarate hydratase class II; TCA cycle	89.26
3r6q_A	468	Aspartase; aspartate ammonia lyase, lyase; 2.40A {	84.73
1jsw_A	478	L-aspartase, L-aspartate ammonia-lyase; amino acid	81.31
1yfm_A	488	Fumarase, YFUM; lyase, krebs cycle, active site wa	80.35

>4eei_A Adenylosuccinate lyase; structural genomics, niaid, national institute of allergy AN infectious diseases; HET: AMP; 1.92A {Francisella tularensis subsp}

Probab=99.54  E-value=1.3e-16  Score=149.91  Aligned_cols=93  Identities=16%  Similarity=0.208  Sum_probs=81.9

Q ss_pred             ccCCCCCHHHHhcCCchhHHHHHHHHHHHHHHHHHcCC-CCccccCccccccccccceeeeccccceeeeeccc-eeecc
Q psy14320         12 LSTRYASKEMQHNFSDMKKFTTWRQLWIYLAEAQQSGF-RNNIYIDPKHNFTLEADRCTVVDSRLGVELERQDD-VGKKR   89 (253)
Q Consensus        12 MI~RYsspEMr~IWSeEnKfqtWLkVE~ALAeAqaEGI-P~~ai~~Ik~~a~fDieRI~~~~~~~~ie~e~~~~-vaftr   89 (253)
                      ||+||++++|+.|||+++||+.|++||+|+++|+++|+ |.++.+.|++..+||++++..      +|.+++|| +||-|
T Consensus         1 m~~ry~~~~m~~~fs~~~~~~~~l~ve~Ala~a~~~GlIp~~~~~~i~~~~~~d~~~i~~------~e~~~~hdV~a~~~   74 (438)
T 4eei_A            1 MIKRYDVAEISKIWADENKYAKMLEVELAILEALEDRMVPKGTAAEIRARAQIRPERVDE------IEKVTKHDIIAFCT   74 (438)
T ss_dssp             CCGGGCCHHHHHHHSHHHHHHHHHHHHHHHHHHGGGTTSCTTHHHHHHHHCCCCHHHHHH------HHHHHSCHHHHHHH
T ss_pred             CCcccCcHHHHHHcChHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHhhCCCCHHHHHH------HHHhcCCCHHHHHH
Confidence            89999999999999999999999999999999999985 999888888887777766655      99996555 99999


Q ss_pred             cccCCCCccCCCc-eeEEEecccccC
Q psy14320         90 SRSEEPEDCRGEE-KVEVVLGGAGVD  114 (253)
Q Consensus        90 ~~se~~~~~~gee-~~~v~~g~~~~~  114 (253)
                      .+.|.    +|++ .+|||+|-.--|
T Consensus        75 ~l~e~----~g~~~~~~iH~G~SsnD   96 (438)
T 4eei_A           75 SIAEQ----FTAETGKFFHFGVTSSD   96 (438)
T ss_dssp             HHHTT----SCTTTTTTTTCSCCHHH
T ss_pred             HHHHH----cCHHhhcccCCCCCHHH
Confidence            99996    4999 999999986544

>2j91_A Adenylosuccinate lyase; disease mutation, adenylosuccinase, succino AMP-lyase, purin biosynthesis, adenylosuccinase DEFI AMP, ADSL, saicar, purine; HET: AMP; 1.8A {Homo sapiens} PDB: 2vd6_A*

Probab=99.42  E-value=2.5e-15  Score=143.29  Aligned_cols=98  Identities=34%  Similarity=0.500  Sum_probs=81.0

Q ss_pred             CCcccccccCCCCCHHHHhcCCchhHHHHHHHHHHHHHHHHHc-CC--CCccccCccccc-cccccceeeeccccceeee
Q psy14320          5 HCKYISPLSTRYASKEMQHNFSDMKKFTTWRQLWIYLAEAQQS-GF--RNNIYIDPKHNF-TLEADRCTVVDSRLGVELE   80 (253)
Q Consensus         5 ~~sY~sPMI~RYsspEMr~IWSeEnKfqtWLkVE~ALAeAqaE-GI--P~~ai~~Ik~~a-~fDieRI~~~~~~~~ie~e   80 (253)
                      +++|++||..||++++|+.|||+++|++.|+++|+|+|+|+++ |+  |.++.+.|++.. .||.++      +.++|.+
T Consensus        32 ~~~~~spl~~ry~~~~m~~~fS~~~~~~~~~~~e~Ala~a~~~~Gl~i~~e~~~~I~~~l~~i~~~~------~~~~e~~  105 (503)
T 2j91_A           32 PDSYRSPLASRYASPEMCFVFSDRYKFRTWRQLWLWLAEAEQTLGLPITDEQIREMKSNLENIDFKM------AAEEEKR  105 (503)
T ss_dssp             TTSCCCHHHHTTSCHHHHHHTSHHHHHHHHHHHHHHHHHHHHHHTCSCCHHHHHHHHTTSSCCCHHH------HHHHHHH
T ss_pred             cccccCCcccccCCHHHHHHhChhHHHHHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhhcCHHH------Hhhhhhh
Confidence            5579999999999999999999999999999999999999999 97  555777777654 455444      4557877


Q ss_pred             eccc-eeecccccCCCCccCCCceeEEEecccc
Q psy14320         81 RQDD-VGKKRSRSEEPEDCRGEEKVEVVLGGAG  112 (253)
Q Consensus        81 ~~~~-vaftr~~se~~~~~~gee~~~v~~g~~~  112 (253)
                      +.|| .+|-..+.|.    +|+..+|||+|-.-
T Consensus       106 ~~hDV~a~v~~l~e~----~g~~~~~iH~G~TS  134 (503)
T 2j91_A          106 LRHDVMAHVHTFGHC----CPKAAGIIHLGATS  134 (503)
T ss_dssp             HSCHHHHHHHHHHHH----CTTTGGGTTTTCCT
T ss_pred             cCCcHHHHHHHHHHH----hccccccccCCCCH
Confidence            6555 8988888774    59999999999853

>1yis_A Adenylosuccinate lyase; structural genomics, PSI, P structure initiative, southeast collaboratory for structura genomics, secsg; 2.40A {Caenorhabditis elegans}

Probab=99.36  E-value=7.4e-15  Score=138.58  Aligned_cols=99  Identities=27%  Similarity=0.368  Sum_probs=80.5

Q ss_pred             CCcccccccCCCCCHH-HHhcCCchhHHHHHHHHHHHHHHHHHc-CC---CCccccCccccc-cccccceeeecccccee
Q psy14320          5 HCKYISPLSTRYASKE-MQHNFSDMKKFTTWRQLWIYLAEAQQS-GF---RNNIYIDPKHNF-TLEADRCTVVDSRLGVE   78 (253)
Q Consensus         5 ~~sY~sPMI~RYsspE-Mr~IWSeEnKfqtWLkVE~ALAeAqaE-GI---P~~ai~~Ik~~a-~fDieRI~~~~~~~~ie   78 (253)
                      +++|++|+..||++++ |+.|||+++|++.|+++|+|+|+|+++ |+   |.++.+.|++.. .||.++      +.++|
T Consensus         4 ~~~~~spl~~ry~~~~~m~~~fs~~~~~~~~~~~e~Ala~a~~~~Gl~~i~~~~~~~I~~~l~~i~~~~------~~~~e   77 (478)
T 1yis_A            4 EDKFESVLSTRYCKNSPLVSILSETNKATLWRQLWIWLAEAEKELGLKQVTQDAIDEMKSNRDVFDWPF------IRSEE   77 (478)
T ss_dssp             GGSCCCHHHHTTTTTCTHHHHTSHHHHHHHHHHHHHHHHHHHHHTTCTTSCHHHHHHHHHTTTCCCHHH------HHHHH
T ss_pred             CccCCCCcccccCChHHHHHHcCchHHHHHHHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHhCCHHH------HhhHH
Confidence            4579999999999999 999999999999999999999999999 97   455777777654 455444      44577


Q ss_pred             eeeccc-eeecccccCCCCccCCCceeEEEeccccc
Q psy14320         79 LERQDD-VGKKRSRSEEPEDCRGEEKVEVVLGGAGV  113 (253)
Q Consensus        79 ~e~~~~-vaftr~~se~~~~~~gee~~~v~~g~~~~  113 (253)
                      ..++|| .+|-..+.|.    +|+..+|||+|-.--
T Consensus        78 ~~~~~DV~a~v~~l~e~----~g~~~~~iH~G~TS~  109 (478)
T 1yis_A           78 RKLKHDVMAHNHAFGKL----CPTAAGIIHLGATSC  109 (478)
T ss_dssp             HHSSCHHHHHHHHHHHH----CTTTGGGTTTTCCHH
T ss_pred             HhcCCcHHHHHHHHHHh----hhhchhheeCCCchh
Confidence            776555 8888877774    599999999998443

>2fel_A 3-carboxy-CIS,CIS-muconate lactonizing enzyme; biodegradation, sulphonic acids, 3-sulphomuconate; 2.20A {Agrobacterium tumefaciens} PDB: 2fen_A

Probab=99.02  E-value=5.6e-12  Score=115.67  Aligned_cols=98  Identities=11%  Similarity=0.059  Sum_probs=75.6

Q ss_pred             cccccccCC-CCCHHHHhcCCchhHHHHHHHHHHHHHHHHHc-CC-CCccccCccccc---cccccceeeeccccceeee
Q psy14320          7 KYISPLSTR-YASKEMQHNFSDMKKFTTWRQLWIYLAEAQQS-GF-RNNIYIDPKHNF---TLEADRCTVVDSRLGVELE   80 (253)
Q Consensus         7 sY~sPMI~R-YsspEMr~IWSeEnKfqtWLkVE~ALAeAqaE-GI-P~~ai~~Ik~~a---~fDieRI~~~~~~~~ie~e   80 (253)
                      .|.+||+.| |++++|+.|||++++++.|++||+|+++|+++ |+ |.++.+.|.+..   .||+++      +.+.+.+
T Consensus         5 ~~~~~l~~~~~~~~~m~~~fs~~~~i~~~~~ve~A~a~a~~~~G~i~~~~a~~I~~~~~~i~~~~~~------~~~~~~~   78 (359)
T 2fel_A            5 PFEHPFLSGLFGDSEIIELFSAKADIDAMIRFETALAQAEAEASIFADDEAEAIVSGLSEFAADMSA------LRHGVAK   78 (359)
T ss_dssp             TTSCTTTHHHHCCHHHHGGGSHHHHHHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHTCCCCHHH------HHHHHHH
T ss_pred             cccccccccccCCHHHHHHcCcHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHhccccHHH------HHhhccc
Confidence            599999996 59999999999999999999999999999999 95 888777777654   334333      3334444


Q ss_pred             eccc-eeecccccCCCCccCCC-ceeEEEecccccC
Q psy14320         81 RQDD-VGKKRSRSEEPEDCRGE-EKVEVVLGGAGVD  114 (253)
Q Consensus        81 ~~~~-vaftr~~se~~~~~~ge-e~~~v~~g~~~~~  114 (253)
                      ..|+ .+|-+.+.|.    +|+ ..+|||+|-.--|
T Consensus        79 ~~~~~~~~~~~l~~~----~g~~~~~~vH~G~SsnD  110 (359)
T 2fel_A           79 DGVVVPELIRQMRAA----VAGQAADKVHFGATSQD  110 (359)
T ss_dssp             HSSSHHHHHHHHHTT----SCGGGGGGTTTTCCHHH
T ss_pred             cCCcHHHHHHHHHHH----cCccccchhcCCCCHhh
Confidence            3333 8888888874    474 5899999976544

>2pfm_A Adenylosuccinate lyase; PURB, purine biosynthesis, B anthracis; 2.00A {Bacillus anthracis} PDB: 1f1o_A 2x75_A*

Probab=99.01  E-value=9.6e-12  Score=116.65  Aligned_cols=97  Identities=27%  Similarity=0.340  Sum_probs=74.7

Q ss_pred             cccccCCCCCHHHHhcCCchhHHHHHHHHHHHHHHHHHc-CC-CCccccCccccccccccceeeeccccceeeee-ccce
Q psy14320          9 ISPLSTRYASKEMQHNFSDMKKFTTWRQLWIYLAEAQQS-GF-RNNIYIDPKHNFTLEADRCTVVDSRLGVELER-QDDV   85 (253)
Q Consensus         9 ~sPMI~RYsspEMr~IWSeEnKfqtWLkVE~ALAeAqaE-GI-P~~ai~~Ik~~a~fDieRI~~~~~~~~ie~e~-~~~v   85 (253)
                      -+-||+||.+++|+.|||++++++.|++||+|+++++++ |+ |.++.+.|.+..+||+++|.      ++|.+. ||++
T Consensus         7 ~~~~~~~~~~~~~~~i~sd~~~i~~~~~v~~A~a~a~~~~G~i~~~~a~~I~~a~~~d~~~i~------~~~~~~~~dVi   80 (444)
T 2pfm_A            7 HHHMISRYTRPEMGAIWTEENKFKAWLEVEILACEAWAELGDIPKEDVKKIREHASFDIDRIY------EIEKETRHDVV   80 (444)
T ss_dssp             ----CCTTCCHHHHHHTSHHHHHHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHCCCCHHHHH------HHHHHHCCHHH
T ss_pred             hhhHHHhcchHHHHHHcChHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHhCCCCHHHHH------HHhccCCCCHH
Confidence            467999999999999999999999999999999999999 95 88877888777667655544      466664 5558


Q ss_pred             eecccccCCCCccCCCceeEEEeccccc
Q psy14320         86 GKKRSRSEEPEDCRGEEKVEVVLGGAGV  113 (253)
Q Consensus        86 aftr~~se~~~~~~gee~~~v~~g~~~~  113 (253)
                      |+-+.+.|.+.  .|+..+|||+|-.--
T Consensus        81 a~~~~l~e~~g--~g~~g~~vH~g~Ssn  106 (444)
T 2pfm_A           81 AFTRAVSETPA--LGEERKWVHYGLTST  106 (444)
T ss_dssp             HHHHHHHTCTT--CCGGGGGTTTTCCHH
T ss_pred             HHHHHHHHHcC--CCcccccccCCCChh
Confidence            99888888531  066778999886543

>1dof_A Adenylosuccinate lyase; purine biosynthesis; 2.10A {Pyrobaculum aerophilum} SCOP: a.127.1.1

Probab=98.92  E-value=8.2e-11  Score=109.12  Aligned_cols=92  Identities=20%  Similarity=0.232  Sum_probs=69.8

Q ss_pred             cccccCCCCCHHHHhcCCchhHHHHHHHHHHHHHHHHHc-CC-CCccccCccccccccccceeeeccccceeeee-ccce
Q psy14320          9 ISPLSTRYASKEMQHNFSDMKKFTTWRQLWIYLAEAQQS-GF-RNNIYIDPKHNFTLEADRCTVVDSRLGVELER-QDDV   85 (253)
Q Consensus         9 ~sPMI~RYsspEMr~IWSeEnKfqtWLkVE~ALAeAqaE-GI-P~~ai~~Ik~~a~fDieRI~~~~~~~~ie~e~-~~~v   85 (253)
                      ++|+..||++++|+.|||++++++.|++||+|+++++++ |+ |.++.+.|.+. .||++++.      +++.+. ||++
T Consensus         3 ~sp~~~ry~~~~~~~i~sd~~~i~~~~~v~~A~a~a~~~~Gii~~~~a~~I~~a-~~d~~~~~------~~~~~~~~dVi   75 (403)
T 1dof_A            3 VSPFDWRYGSEEIRRLFTNEAIINAYLEVERALVCALEELGVAERGCCEKVNKA-SVSADEVY------RLERETGHDIL   75 (403)
T ss_dssp             CCGGGTTSSCHHHHTTSSHHHHHHHHHHHHHHHHHHHHHTTSSCTTHHHHHHHC-CCCTTTC--------------CHHH
T ss_pred             CCCcccccCcHHHHHHcChHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHC-CCCHHHHH------HHhhccCCcHH
Confidence            478888999999999999999999999999999999999 95 88877777765 67765554      477765 5558


Q ss_pred             eecccccCCCCccCCCceeEEEeccccc
Q psy14320         86 GKKRSRSEEPEDCRGEEKVEVVLGGAGV  113 (253)
Q Consensus        86 aftr~~se~~~~~~gee~~~v~~g~~~~  113 (253)
                      |+-+.+.|.    +|  .+|||+|-.--
T Consensus        76 a~~~~l~e~----~G--g~~vH~g~Ssn   97 (403)
T 1dof_A           76 SLVLLLEQK----SG--CRYVHYGATSN   97 (403)
T ss_dssp             HHHHHHHHH----HC--CSCTTTTCCHH
T ss_pred             HHHHHHHHH----cC--CCcccCCCChh
Confidence            887777775    36  57899876543

>3c8t_A Fumarate lyase; structural genomics, PSI-2, protein structure initiat YORK SGX research center for structural genomics, nysgxrc; 2.20A {Mesorhizobium SP}

Probab=98.88  E-value=3.3e-11  Score=113.06  Aligned_cols=96  Identities=19%  Similarity=0.101  Sum_probs=74.7

Q ss_pred             ccccccC-CCCCHHHHhcCCchhHHHHHHHHHHHHHHHHHc-CC-CCccccCccccc---cccccceeeeccccceeeee
Q psy14320          8 YISPLST-RYASKEMQHNFSDMKKFTTWRQLWIYLAEAQQS-GF-RNNIYIDPKHNF---TLEADRCTVVDSRLGVELER   81 (253)
Q Consensus         8 Y~sPMI~-RYsspEMr~IWSeEnKfqtWLkVE~ALAeAqaE-GI-P~~ai~~Ik~~a---~fDieRI~~~~~~~~ie~e~   81 (253)
                      +.++|++ ||++++|+.|||+.++++.|++||+|+++++++ |+ |.++.+.|.+..   .||++++.      +++...
T Consensus         3 ~~~~~~~~ry~~~~~~~~~sd~~~i~~~~~v~~A~a~a~~~~Gii~~~~a~~I~~a~~~~~~~~~~~~------~~~~~~   76 (451)
T 3c8t_A            3 LDSPLYGRSFADDKMRELFSAQSFISRCVETEVALARAQARLGIIPEDAAAGITAAARTFAPEMERLR------DDTEIV   76 (451)
T ss_dssp             ---CCSSCCCSCHHHHHHTSHHHHHHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHCCCCHHHHH------HHHHHH
T ss_pred             CCCCccccccCcHHHHHHcCCHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHhhhcCCCHHHHH------HHhhcC
Confidence            5567777 999999999999999999999999999999999 95 888777777665   56644443      456664


Q ss_pred             -ccceeecccccCCCCccCCCceeEEEeccccc
Q psy14320         82 -QDDVGKKRSRSEEPEDCRGEEKVEVVLGGAGV  113 (253)
Q Consensus        82 -~~~vaftr~~se~~~~~~gee~~~v~~g~~~~  113 (253)
                       ||++|+-+.+.|.    +|+..+|||+|-.--
T Consensus        77 ~~dVia~~~~l~e~----~g~~g~~vH~g~Ssn  105 (451)
T 3c8t_A           77 GYPILPLVEQLSAH----AGEAGKYLHWGATTQ  105 (451)
T ss_dssp             SSSHHHHHHHHHHH----HGGGGGGSSSSCCHH
T ss_pred             CCcHHHHHHHHHHH----cccccccccCCCChh
Confidence             5558998877885    477788999886543

>1re5_A 3-carboxy-CIS,CIS-muconate cycloisomerase; homotetramer, fumarase class II cycloisomerase, molecular EV isomerase; HET: CIT; 2.60A {Pseudomonas putida} SCOP: a.127.1.1

Probab=98.87  E-value=1.6e-11  Score=114.95  Aligned_cols=97  Identities=16%  Similarity=0.149  Sum_probs=75.1

Q ss_pred             ccccccCCCCC-HHHHhcCCchhHHHHHHHHHHHHHHHHHc-CC-CCccccCccccc---cccccceeeeccccceeeee
Q psy14320          8 YISPLSTRYAS-KEMQHNFSDMKKFTTWRQLWIYLAEAQQS-GF-RNNIYIDPKHNF---TLEADRCTVVDSRLGVELER   81 (253)
Q Consensus         8 Y~sPMI~RYss-pEMr~IWSeEnKfqtWLkVE~ALAeAqaE-GI-P~~ai~~Ik~~a---~fDieRI~~~~~~~~ie~e~   81 (253)
                      +.+||++||++ ++|+.|||++++++.|++||+|+++++++ |+ |.++.+.|.+..   .||++++      .++|...
T Consensus         1 ~~~~~~~ry~~~~~~~~i~s~~~~i~~~~~v~~A~a~a~~~~G~i~~~~a~~I~~a~~~~~f~~~~~------~~~~~~~   74 (450)
T 1re5_A            1 MSNQLFDAYFTAPAMREIFSDRGRLQGMLDFEAALARAEASAGLVPHSAVAAIEAACQAERYDTGAL------ANAIATA   74 (450)
T ss_dssp             --CCTTHHHHSCHHHHHHTSHHHHHHHHHHHHHHHHHHHHTTTSSCHHHHHHHHHHCCGGGSCHHHH------HHHHHHH
T ss_pred             CCCcchhhccCCHHHHHHcCcHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHhcCCCCHHHH------HHHHhcc
Confidence            46789999999 99999999999999999999999999999 95 887777776653   4555544      3456654


Q ss_pred             -ccceeecccccCCCCccCC---Cc-eeEEEecccccC
Q psy14320         82 -QDDVGKKRSRSEEPEDCRG---EE-KVEVVLGGAGVD  114 (253)
Q Consensus        82 -~~~vaftr~~se~~~~~~g---ee-~~~v~~g~~~~~  114 (253)
                       ||++|+-+.+.|.    +|   ++ .+|||+|-.--|
T Consensus        75 ~~dV~a~~~~l~e~----~g~~~~~~~~~vh~g~SsnD  108 (450)
T 1re5_A           75 GNSAIPLVKALGKV----IATGVPEAERYVHLGATSQD  108 (450)
T ss_dssp             SSSHHHHHHHHHHH----HHHHCGGGGGGTTTTCCHHH
T ss_pred             CccHHHHHHHHHHH----hCCCCCcccccccCCCChhh
Confidence             5558887767774    47   77 899999975433

>1c3c_A Protein (adenylosuccinate lyase); purine biosynthesis; 1.80A {Thermotoga maritima} SCOP: a.127.1.1 PDB: 1c3u_A

Probab=98.86  E-value=3.4e-11  Score=112.16  Aligned_cols=91  Identities=15%  Similarity=0.245  Sum_probs=74.0

Q ss_pred             cCCCCCHHHHhcCCchhHHHHHHHHHHHHHHHHHc-CC-CCccccCccccccccccceeeeccccceeeee-ccceeecc
Q psy14320         13 STRYASKEMQHNFSDMKKFTTWRQLWIYLAEAQQS-GF-RNNIYIDPKHNFTLEADRCTVVDSRLGVELER-QDDVGKKR   89 (253)
Q Consensus        13 I~RYsspEMr~IWSeEnKfqtWLkVE~ALAeAqaE-GI-P~~ai~~Ik~~a~fDieRI~~~~~~~~ie~e~-~~~vaftr   89 (253)
                      ++||++++|+.|||++++++.|++||+|+++++++ |+ |.++.+.|.+..+||+++|.      +.+.+. ||++|+-+
T Consensus         1 ~~ry~~~~~~~~~sd~~~i~~~~~v~~A~a~a~~~~Gii~~~~a~~I~~a~~~d~~~i~------~~~~~~~~dVia~~~   74 (429)
T 1c3c_A            1 VERYSLSPMKDLWTEEAKYRRWLEVELAVTRAYEELGMIPKGVTERIRNNAKIDVELFK------KIEEKTNHDVVAFVE   74 (429)
T ss_dssp             CGGGCCTTHHHHTSHHHHHHHHHHHHHHHHHHHHHTTSSCTTHHHHHHHHCCCCHHHHH------HHHHHHCCHHHHHHH
T ss_pred             CCCcccHHHHHHcChHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHhCCCCHHHHH------HHHhccCCChHHHHH
Confidence            47999999999999999999999999999999999 95 88888888777667755544      356654 55589987


Q ss_pred             cccCCCCccCCCceeEEEeccccc
Q psy14320         90 SRSEEPEDCRGEEKVEVVLGGAGV  113 (253)
Q Consensus        90 ~~se~~~~~~gee~~~v~~g~~~~  113 (253)
                      .+.|.    +|+..+|||+|-.--
T Consensus        75 ~l~e~----~g~~g~~vH~g~Ssn   94 (429)
T 1c3c_A           75 GIGSM----IGEDSRFFHYGLTSS   94 (429)
T ss_dssp             HHHHH----HGGGGGGTTTTCCHH
T ss_pred             HHHHH----cCcccccccCCCChh
Confidence            77775    488889999886543

>3bhg_A Adenylosuccinate lyase; structural G PSI-2, protein structure initiative, midwest center for STR genomics, MCSG; 1.90A {Legionella pneumophila subsp}

Probab=98.82  E-value=4.6e-11  Score=112.49  Aligned_cols=102  Identities=16%  Similarity=0.091  Sum_probs=77.5

Q ss_pred             cccccccCCCCCH--HHHhcCCchhHHHHHHHHHHHHHHHHHc--CCC------CccccCccccc-cc---cccceeeec
Q psy14320          7 KYISPLSTRYASK--EMQHNFSDMKKFTTWRQLWIYLAEAQQS--GFR------NNIYIDPKHNF-TL---EADRCTVVD   72 (253)
Q Consensus         7 sY~sPMI~RYssp--EMr~IWSeEnKfqtWLkVE~ALAeAqaE--GIP------~~ai~~Ik~~a-~f---DieRI~~~~   72 (253)
                      .+++|+..||+++  +|+.+||++++++.|+++|+|+++|+++  |||      .++.+.|++.. .|   |+      +
T Consensus        10 ~~~s~~~gRy~~~~~~~~~~fsd~~~~~~~l~ve~a~~~ala~~~gi~~ip~i~~~~~~~i~~~~~~~~~~d~------~   83 (459)
T 3bhg_A           10 NAISPIDGRYVNKTRALSPYFSEFALTYYRLMVEIKWFESLAANDTIPEVPALDNKARKFLSDLISNFNESEA------E   83 (459)
T ss_dssp             GCSSTTTTTTHHHHGGGTTTSSHHHHHHHHHHHHHHHHHHHHTCTTCTTSCCCCHHHHHHHHHHHHTCCHHHH------H
T ss_pred             cccCcccccccCChHHHHHHcCHHHHHHHHHHHHHHHHHHHHhccCCCCCCCCCHHHHHHHHHHHHHhccccH------H
Confidence            4788999999998  9999999999999999999999999999  574      34666666553 34   33      3


Q ss_pred             cccceeeeeccc-eeecccccCCCCcc--CCCceeEEEecccccC
Q psy14320         73 SRLGVELERQDD-VGKKRSRSEEPEDC--RGEEKVEVVLGGAGVD  114 (253)
Q Consensus        73 ~~~~ie~e~~~~-vaftr~~se~~~~~--~gee~~~v~~g~~~~~  114 (253)
                      ++.++|.++.|| +||-+.+.|...+.  +++..+|||+|-.--|
T Consensus        84 ~~~~~e~~~~~Dv~a~e~~l~e~~g~~~~~~~~~~~iH~g~SsnD  128 (459)
T 3bhg_A           84 KIKEFEKQTNHDVKAVEYYLQDKFQENEQLKSCVAFIHFACTSED  128 (459)
T ss_dssp             HHHHHTTTCSSHHHHHHHHHHHHHTTSTTGGGGGGGTTTTCCHHH
T ss_pred             HHHHHHHhcCCChHHHHHHHHHHhcccccCchhhhhhcCCCCHHh
Confidence            455689886666 89888888854221  1345899999976543

>1q5n_A 3-carboxy-CIS,CIS-muconate cycloisomerase; CMLE, aromatic degradation; 2.30A {Acinetobacter calcoaceticus} SCOP: a.127.1.1

Probab=98.77  E-value=7.2e-11  Score=110.67  Aligned_cols=102  Identities=15%  Similarity=0.087  Sum_probs=74.9

Q ss_pred             cccccccC-CCCCHHHHhcCCchhHHHHHHHHHHHHHHHHHc-CC-CCccccCccccc-----cccccceeeecccccee
Q psy14320          7 KYISPLST-RYASKEMQHNFSDMKKFTTWRQLWIYLAEAQQS-GF-RNNIYIDPKHNF-----TLEADRCTVVDSRLGVE   78 (253)
Q Consensus         7 sY~sPMI~-RYsspEMr~IWSeEnKfqtWLkVE~ALAeAqaE-GI-P~~ai~~Ik~~a-----~fDieRI~~~~~~~~ie   78 (253)
                      ++-+||++ ||++++|+.|||+.++++.|++||+|+++++++ |+ |.++.+.|.+..     .||+++      +.+++
T Consensus         2 ~~~~~~~~~ry~~~~~~~~~sd~~~i~~~~~v~~A~a~a~~~~Gii~~~~a~~I~~a~~~i~~~~~~~~------~~~~~   75 (454)
T 1q5n_A            2 SHMSQLYASLFYQRDVTEIFSDRALVSYMVEAEVALAQAQAQVGVIPQSAATVIQRAAKTAIDKIDFDA------LATAT   75 (454)
T ss_dssp             ----CTTHHHHSCHHHHHHTSHHHHHHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHTTHHHHCCHHH------HHHHH
T ss_pred             CCCCCccccccCcHHHHHHcCcHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHhhhcCCHHH------HHHHh
Confidence            35577888 999999999999999999999999999999999 95 887777776654     455443      33456


Q ss_pred             eee-ccceeecccccCCCCccCCCceeEEEecccccC
Q psy14320         79 LER-QDDVGKKRSRSEEPEDCRGEEKVEVVLGGAGVD  114 (253)
Q Consensus        79 ~e~-~~~vaftr~~se~~~~~~gee~~~v~~g~~~~~  114 (253)
                      ... ||++|+-+.+.|-+...+|+..+|||+|-.--|
T Consensus        76 ~~~~~dVia~~~~l~e~~g~~~g~~~~~vH~g~SsnD  112 (454)
T 1q5n_A           76 GLAGNIAIPFVKQLTAIVKDADEDAARYVHWGATSQD  112 (454)
T ss_dssp             HHHSSSHHHHHHHHHHHHHTTCTTGGGGTTTTCCHHH
T ss_pred             hccCCcHHHHHHHHHHHhccccCCccccccCCCChhh
Confidence            664 555888777777432223888899998865433

>2qga_B Adenylosuccinate lyase; malaria, PV003765, SGC, structural G consortium; HET: AMP; 2.01A {Plasmodium vivax} PDB: 2hvg_A

Probab=98.66  E-value=2.2e-10  Score=108.07  Aligned_cols=105  Identities=16%  Similarity=0.059  Sum_probs=76.0

Q ss_pred             cccccccCCCCCH--HHHhcCCchhHHHHHHHHHHHHHHHHHc--CC-CCccccCcccc----ccccccceeeeccccce
Q psy14320          7 KYISPLSTRYASK--EMQHNFSDMKKFTTWRQLWIYLAEAQQS--GF-RNNIYIDPKHN----FTLEADRCTVVDSRLGV   77 (253)
Q Consensus         7 sY~sPMI~RYssp--EMr~IWSeEnKfqtWLkVE~ALAeAqaE--GI-P~~ai~~Ik~~----a~fDieRI~~~~~~~~i   77 (253)
                      +.++|+..||+++  +|+.+||++++++.|+++|+|+++++++  || |..+.+.|...    ..|+.+  . .+++.++
T Consensus         6 ~~~s~~~gRy~~~~~~~~~~~sd~~~~~~~i~ve~A~~~ala~~~gii~~~~~~~i~~l~~~~~~~~~~--d-~~~i~~~   82 (465)
T 2qga_B            6 KNISPIDGRYKKACGELSAFFSEHALIKHRIIVEVRWLLFLNEEELFFEKVTDHSVEVLNQIATNITDS--D-IARVKAI   82 (465)
T ss_dssp             GCSSTTTTTTHHHHGGGGGTSSHHHHHHHHHHHHHHHHHHHHHHTSSSCCCCHHHHHHHHHHHHCCCHH--H-HHHHHHH
T ss_pred             cccCcccccccCCcHHHHHHhCHHHHHHHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHhhccc--c-HHHHHHH
Confidence            4678888899997  8999999999999999999999999999  75 76655555421    123110  0 1344568


Q ss_pred             eeeeccc-eeecccccCCCCcc----CCCceeEEEecccccC
Q psy14320         78 ELERQDD-VGKKRSRSEEPEDC----RGEEKVEVVLGGAGVD  114 (253)
Q Consensus        78 e~e~~~~-vaftr~~se~~~~~----~gee~~~v~~g~~~~~  114 (253)
                      |.+++|| +||-+.+.|...+.    +|+..+|||+|-.--|
T Consensus        83 e~~~~hDV~a~e~~l~e~~g~~~~~~~~~~~~~iH~g~SsnD  124 (465)
T 2qga_B           83 EEETNHDVKAVEYFVKEKLKNSKREDLLKIKEYVHYLCTSED  124 (465)
T ss_dssp             HHHHSCHHHHHHHHHHHHHHTSCCHHHHHHGGGTTTTCCHHH
T ss_pred             hhccCCChHHHHHHHHHHhcccccccchhhhhhccCCCChhh
Confidence            8875555 99999998864211    1277999999976544

>2j91_A Adenylosuccinate lyase; disease mutation, adenylosuccinase, succino AMP-lyase, purin biosynthesis, adenylosuccinase DEFI AMP, ADSL, saicar, purine; HET: AMP; 1.8A {Homo sapiens} PDB: 2vd6_A*

Probab=98.28  E-value=3.3e-07  Score=87.57  Aligned_cols=44  Identities=59%  Similarity=0.936  Sum_probs=41.1

Q ss_pred             CcCccccccccccCCHhHHhcCCcchHHHHHHHHHHHHHhhhhc
Q psy14320        208 EHCKYISPLSTRYASKEMQHNFSDMKKFTTWRQLWIYLAEAQQV  251 (253)
Q Consensus       208 ~~~~y~~pLi~RYASpEM~~IFSdenKf~tWRkLwiALAeAea~  251 (253)
                      ++++|.+||..||++++|+.|||+++||++|+++|+++|+|++.
T Consensus        31 ~~~~~~spl~~ry~~~~m~~~fS~~~~~~~~~~~e~Ala~a~~~   74 (503)
T 2j91_A           31 SPDSYRSPLASRYASPEMCFVFSDRYKFRTWRQLWLWLAEAEQT   74 (503)
T ss_dssp             CTTSCCCHHHHTTSCHHHHHHTSHHHHHHHHHHHHHHHHHHHHH
T ss_pred             CcccccCCcccccCCHHHHHHhChhHHHHHHHHHHHHHHHHHHH
Confidence            35789999999999999999999999999999999999998863

>2ptr_A Adenylosuccinate lyase; mutant-substrate complex; HET: 2SA; 1.85A {Escherichia coli} PDB: 2ptq_A* 2pts_A 3gzh_A

Probab=98.25  E-value=1.7e-08  Score=95.12  Aligned_cols=105  Identities=11%  Similarity=0.078  Sum_probs=73.8

Q ss_pred             cccccccCCCCCH--HHHhcCCchhHHHHHHHHHHHHHHHHHc-C-CC------CccccCccccc-cccccceeeecccc
Q psy14320          7 KYISPLSTRYASK--EMQHNFSDMKKFTTWRQLWIYLAEAQQS-G-FR------NNIYIDPKHNF-TLEADRCTVVDSRL   75 (253)
Q Consensus         7 sY~sPMI~RYssp--EMr~IWSeEnKfqtWLkVE~ALAeAqaE-G-IP------~~ai~~Ik~~a-~fDieRI~~~~~~~   75 (253)
                      .+++|+..||+++  +|+.+||+++.++.|+++|+|+++|+++ | ||      .++.+.|.+.. .|...   -++.+.
T Consensus         7 ~~~s~~~gRy~~~~~~~~~~fsd~~~i~~~~~ve~A~a~ala~~g~i~~ip~i~~~~a~~I~~~~~~i~~g---~~~~~~   83 (462)
T 2ptr_A            7 TAVSPVDGRYGDKVSALRGIFSEYGLLKFRVQVEVRWLQKLAAHAAIKEVPAFAADAIGYLDAIVASFSEE---DAARIK   83 (462)
T ss_dssp             TCSSTTTTTTGGGSGGGGGTTSHHHHHHHHHHHHHHHHHHHHHCTTCTTSCCCCHHHHHHHHHHHHTCCHH---HHHHHH
T ss_pred             cccCcccccccCchHHHHHHCCcHHHHHHHHHHHHHHHHHHHHcCCCCCCCCCCHHHHHHHHHHHHHhccC---CHHHHH
Confidence            3788988999997  9999999999999999999999999999 5 64      34556666543 23100   124455


Q ss_pred             ceeeeeccc-eeecccccCCCCcc--CCCceeEEEecccccC
Q psy14320         76 GVELERQDD-VGKKRSRSEEPEDC--RGEEKVEVVLGGAGVD  114 (253)
Q Consensus        76 ~ie~e~~~~-vaftr~~se~~~~~--~gee~~~v~~g~~~~~  114 (253)
                      ++|..+.|| .++-+.+.|.+.+.  +++-.+|||+|-.--|
T Consensus        84 ~~~~~~~~dv~av~~~l~e~~g~~g~~~~~~~~vH~g~SsnD  125 (462)
T 2ptr_A           84 TIERTTNHDVKAVEYFLKEKVAEIPELHAVSEFIHFACTSED  125 (462)
T ss_dssp             HHHHHHSCHHHHHHHHHHHHHTTSHHHHTTGGGTTTTCCHHH
T ss_pred             hhccccCCCHHHHHHHHHHHhccccCCcchhhhccCCCCHHH
Confidence            677665555 88888887643110  0124689999876443

>1k7w_A Delta 2 crystallin; eye lens protein, argininosuccinate lyase, enzyme mechanism; HET: AS1; 1.96A {Anas platyrhynchos} SCOP: a.127.1.1 PDB: 1hy1_A 1tju_A 1auw_A 1tjv_A 1tjw_A* 1u16_A* 1u15_A* 1dcn_A* 1xwo_A 1hy0_A 1i0a_A 1aos_A 1k62_A

Probab=97.16  E-value=4.6e-06  Score=78.90  Aligned_cols=92  Identities=12%  Similarity=0.093  Sum_probs=61.0

Q ss_pred             ccCCCCCHH--HHhcCC-----chhHHHHHHHHHHHHHHHHHc-CC-CCccccCccccccccccceeeecccccee---e
Q psy14320         12 LSTRYASKE--MQHNFS-----DMKKFTTWRQLWIYLAEAQQS-GF-RNNIYIDPKHNFTLEADRCTVVDSRLGVE---L   79 (253)
Q Consensus        12 MI~RYsspE--Mr~IWS-----eEnKfqtWLkVE~ALAeAqaE-GI-P~~ai~~Ik~~a~fDieRI~~~~~~~~ie---~   79 (253)
                      +-.||+++.  |..+|+     +.+.++.|+++|+|+++|+++ |+ |.++.+.|.+..+    +|.  +++.+.+   .
T Consensus        11 ~~~r~~~~~~~~~~~f~~s~~~d~~~~~~~~~v~~A~a~a~~~~Gii~~~~a~~I~~a~~----~i~--~~~~~~~f~~~   84 (468)
T 1k7w_A           11 WGGRFSGSTDPIMEKLNSSIAYDQRLSEVDIQGSMAYAKALEKAGILTKTELEKILSGLE----KIS--EEWSKGVFVVK   84 (468)
T ss_dssp             --------CCHHHHHHHCCHHHHGGGHHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHH----HHH--HHHHHTCCCCC
T ss_pred             cccccchhHHHHHHHccCCCcccHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHH----HHH--hhhhcccCccC
Confidence            445998777  999999     999999999999999999999 95 8877777776542    111  1222222   1


Q ss_pred             eeccc--eeecccccCCCCccCCCceeEEEeccccc
Q psy14320         80 ERQDD--VGKKRSRSEEPEDCRGEEKVEVVLGGAGV  113 (253)
Q Consensus        80 e~~~~--vaftr~~se~~~~~~gee~~~v~~g~~~~  113 (253)
                      ...||  .++-+.+.|.    +|+..+|||+|-.--
T Consensus        85 ~~~~dv~m~~~~~l~e~----~g~~g~~vH~g~Ssn  116 (468)
T 1k7w_A           85 QSDEDIHTANERRLKEL----IGDIAGKLHTGRSRN  116 (468)
T ss_dssp             TTCCSHHHHHHHHHHHH----HCGGGGGGGTTCCHH
T ss_pred             CCCCchHHHHHHHHHHH----ccccccceecCCChh
Confidence            23444  4888888775    488889999886543

>1vdk_A Fumarase C, fumarate hydratase class II; TCA cycle, riken structural genomics/proteomics in RSGI, structural genomics, lyase; 1.80A {Thermus thermophilus} SCOP: a.127.1.1

Probab=89.26  E-value=0.017  Score=54.64  Aligned_cols=34  Identities=15%  Similarity=0.036  Sum_probs=28.8

Q ss_pred             chhHHHHHHHHHHHHHHHHHc-CC-CCccccCcccc
Q psy14320         27 DMKKFTTWRQLWIYLAEAQQS-GF-RNNIYIDPKHN   60 (253)
Q Consensus        27 eEnKfqtWLkVE~ALAeAqaE-GI-P~~ai~~Ik~~   60 (253)
                      +.++++.|++||+|+|+|+++ |+ |.++.+.|.+.
T Consensus        42 ~~~~i~~~~~v~~A~a~a~~~~Gii~~~~a~~I~~a   77 (466)
T 1vdk_A           42 PLEIIRAYGMLKKAAARANLELGELPEEIAKAIIQA   77 (466)
T ss_dssp             CHHHHHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHH
T ss_pred             cHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHH
Confidence            578999999999999999999 95 88766666554

>3r6q_A Aspartase; aspartate ammonia lyase, lyase; 2.40A {Bacillus SP} SCOP: a.127.1.1 PDB: 1j3u_A 3r6v_A 3r6y_A

Probab=84.73  E-value=0.32  Score=46.31  Aligned_cols=52  Identities=12%  Similarity=0.072  Sum_probs=42.9

Q ss_pred             ccccccCCCCCHHHHhc--C--C----chhHHHHHHHHHHHHHHHHHc-CC-CCccccCccc
Q psy14320          8 YISPLSTRYASKEMQHN--F--S----DMKKFTTWRQLWIYLAEAQQS-GF-RNNIYIDPKH   59 (253)
Q Consensus         8 Y~sPMI~RYsspEMr~I--W--S----eEnKfqtWLkVE~ALAeAqaE-GI-P~~ai~~Ik~   59 (253)
                      ..-|-..+|+...||.+  |  |    +...++.|+.|+.|+|+|+++ |+ |.++.+.|.+
T Consensus        15 ~~vp~~~~yg~qt~ra~~nf~i~~~~~~~~~i~a~~~vk~A~A~a~~~~Gil~~~~a~aI~~   76 (468)
T 3r6q_A           15 KEIPKDAYYGVQTIRATENFPITGYRIHPELIKSLGIVKKSAALANMEVGLLDKEVGQYIVK   76 (468)
T ss_dssp             EEECTTCCCCHHHHHHHHHCCSSCCCCCHHHHHHHHHHHHHHHHHHHHTTCSCHHHHHHHHH
T ss_pred             ccCCcccccCHHHHHHHHccccCCCCCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHH
Confidence            45577789999999999  9  5    679999999999999999999 95 7765555543

>1jsw_A L-aspartase, L-aspartate ammonia-lyase; amino acid ammonia-lyase; HET: BGC; 2.70A {Escherichia coli} SCOP: a.127.1.1

Probab=81.31  E-value=0.39  Score=45.57  Aligned_cols=54  Identities=11%  Similarity=-0.063  Sum_probs=39.9

Q ss_pred             cccccccCCCCCH--HHHhcCC--------chhHHHHHHHHHHHHHHHHHc-CC-CCccccCcccc
Q psy14320          7 KYISPLSTRYASK--EMQHNFS--------DMKKFTTWRQLWIYLAEAQQS-GF-RNNIYIDPKHN   60 (253)
Q Consensus         7 sY~sPMI~RYssp--EMr~IWS--------eEnKfqtWLkVE~ALAeAqaE-GI-P~~ai~~Ik~~   60 (253)
                      ...-|...+|+..  .....|+        +.+.++.|++||+|+++|+++ |+ |.++.+.|.+.
T Consensus        14 ~~~vp~~~~~g~~t~r~~~~f~~s~~~~~~~~~~i~~~~~ve~A~a~a~~~~Gii~~~~a~~I~~a   79 (478)
T 1jsw_A           14 TREVPADAYYGVHTLRAIENFYISNNKISDIPEFVRGMVMVKKAAAMANKELQTIPKSVANAIIAA   79 (478)
T ss_dssp             EEEEESSCCCCHHHHHHHHHCCSCSCCSCCTTSHHHHHHHHHHHHHHHHHHTTCSCHHHHHHHHHH
T ss_pred             CcCCCCccccchHHHHHHHhCCCcCccccCcHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHH
Confidence            4556666777633  2334444        689999999999999999999 95 87777776655

>1yfm_A Fumarase, YFUM; lyase, krebs cycle, active site water, hydratase, subunit active site; 2.60A {Saccharomyces cerevisiae} SCOP: a.127.1.1

Probab=80.35  E-value=0.11  Score=49.74  Aligned_cols=34  Identities=15%  Similarity=0.013  Sum_probs=28.2

Q ss_pred             chhHHHHHHHHHHHHHHHHHc-CC-CCccccCcccc
Q psy14320         27 DMKKFTTWRQLWIYLAEAQQS-GF-RNNIYIDPKHN   60 (253)
Q Consensus        27 eEnKfqtWLkVE~ALAeAqaE-GI-P~~ai~~Ik~~   60 (253)
                      +++.++.|++|++|+|+|+++ |+ |.++.+.|.+.
T Consensus        67 ~~~~i~a~~~v~~A~A~a~~~~Gil~~~~a~aI~~a  102 (488)
T 1yfm_A           67 PLPLVHAFGVLKKSAAIVNESLGGLDPKISKAIQQA  102 (488)
T ss_dssp             CHHHHHHHHHHHHHHHHHHHHTTCSCHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHH
Confidence            467899999999999999999 95 88766666544

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	253
d1dofa_	402	a.127.1.1 (A:) Adenylosuccinate lyase {Archaeon Py	5e-10
d1dofa_	402	a.127.1.1 (A:) Adenylosuccinate lyase {Archaeon Py	5e-10
d1c3ca_	429	a.127.1.1 (A:) Adenylosuccinate lyase {Thermotoga	4e-07
d1c3ca_	429	a.127.1.1 (A:) Adenylosuccinate lyase {Thermotoga	4e-07
d1re5a_	448	a.127.1.1 (A:) 3-carboxy-cis,cis-muconate cycloiso	2e-06
d1re5a_	448	a.127.1.1 (A:) 3-carboxy-cis,cis-muconate cycloiso	2e-06
d1q5na_	444	a.127.1.1 (A:) 3-carboxy-cis,cis-muconate cycloiso	4e-05
d1q5na_	444	a.127.1.1 (A:) 3-carboxy-cis,cis-muconate cycloiso	4e-05

>d1dofa_ a.127.1.1 (A:) Adenylosuccinate lyase {Archaeon Pyrobaculum aerophilum [TaxId: 13773]} Length = 402

class: All alpha proteins
fold: L-aspartase-like
superfamily: L-aspartase-like
family: L-aspartase/fumarase
domain: Adenylosuccinate lyase
species: Archaeon Pyrobaculum aerophilum [TaxId: 13773]

 Score = 56.5 bits (135), Expect = 5e-10
 Identities = 9/38 (23%), Positives = 19/38 (50%)

Query: 8  YISPLSTRYASKEMQHNFSDMKKFTTWRQLWIYLAEAQ 45
          ++SP   RY S+E++  F++      + ++   L  A 
Sbjct: 1  HVSPFDWRYGSEEIRRLFTNEAIINAYLEVERALVCAL 38

>d1dofa_ a.127.1.1 (A:) Adenylosuccinate lyase {Archaeon Pyrobaculum aerophilum [TaxId: 13773]} Length = 402

class: All alpha proteins
fold: L-aspartase-like
superfamily: L-aspartase-like
family: L-aspartase/fumarase
domain: Adenylosuccinate lyase
species: Archaeon Pyrobaculum aerophilum [TaxId: 13773]

 Score = 56.5 bits (135), Expect = 5e-10
 Identities = 9/38 (23%), Positives = 19/38 (50%)

Query: 212 YISPLSTRYASKEMQHNFSDMKKFTTWRQLWIYLAEAQ 249
           ++SP   RY S+E++  F++      + ++   L  A 
Sbjct: 1   HVSPFDWRYGSEEIRRLFTNEAIINAYLEVERALVCAL 38

>d1c3ca_ a.127.1.1 (A:) Adenylosuccinate lyase {Thermotoga maritima [TaxId: 2336]} Length = 429

class: All alpha proteins
fold: L-aspartase-like
superfamily: L-aspartase-like
family: L-aspartase/fumarase
domain: Adenylosuccinate lyase
species: Thermotoga maritima [TaxId: 2336]

 Score = 48.0 bits (113), Expect = 4e-07
 Identities = 6/31 (19%), Positives = 16/31 (51%)

Query: 15 RYASKEMQHNFSDMKKFTTWRQLWIYLAEAQ 45
          RY+   M+  +++  K+  W ++ + +  A 
Sbjct: 3  RYSLSPMKDLWTEEAKYRRWLEVELAVTRAY 33

>d1c3ca_ a.127.1.1 (A:) Adenylosuccinate lyase {Thermotoga maritima [TaxId: 2336]} Length = 429

class: All alpha proteins
fold: L-aspartase-like
superfamily: L-aspartase-like
family: L-aspartase/fumarase
domain: Adenylosuccinate lyase
species: Thermotoga maritima [TaxId: 2336]

 Score = 48.0 bits (113), Expect = 4e-07
 Identities = 6/31 (19%), Positives = 16/31 (51%)

Query: 219 RYASKEMQHNFSDMKKFTTWRQLWIYLAEAQ 249
           RY+   M+  +++  K+  W ++ + +  A 
Sbjct: 3   RYSLSPMKDLWTEEAKYRRWLEVELAVTRAY 33

>d1re5a_ a.127.1.1 (A:) 3-carboxy-cis,cis-muconate cycloisomerase (CMLE) {Pseudomonas putida, strain KT2440 [TaxId: 303]} Length = 448

class: All alpha proteins
fold: L-aspartase-like
superfamily: L-aspartase-like
family: L-aspartase/fumarase
domain: 3-carboxy-cis,cis-muconate cycloisomerase (CMLE)
species: Pseudomonas putida, strain KT2440 [TaxId: 303]

 Score = 45.8 bits (107), Expect = 2e-06
 Identities = 7/34 (20%), Positives = 12/34 (35%)

Query: 12 LSTRYASKEMQHNFSDMKKFTTWRQLWIYLAEAQ 45
              + +  M+  FSD  +          LA A+
Sbjct: 4  FDAYFTAPAMREIFSDRGRLQGMLDFEAALARAE 37

>d1re5a_ a.127.1.1 (A:) 3-carboxy-cis,cis-muconate cycloisomerase (CMLE) {Pseudomonas putida, strain KT2440 [TaxId: 303]} Length = 448

class: All alpha proteins
fold: L-aspartase-like
superfamily: L-aspartase-like
family: L-aspartase/fumarase
domain: 3-carboxy-cis,cis-muconate cycloisomerase (CMLE)
species: Pseudomonas putida, strain KT2440 [TaxId: 303]

 Score = 45.8 bits (107), Expect = 2e-06
 Identities = 7/34 (20%), Positives = 12/34 (35%)

Query: 216 LSTRYASKEMQHNFSDMKKFTTWRQLWIYLAEAQ 249
               + +  M+  FSD  +          LA A+
Sbjct: 4   FDAYFTAPAMREIFSDRGRLQGMLDFEAALARAE 37

>d1q5na_ a.127.1.1 (A:) 3-carboxy-cis,cis-muconate cycloisomerase (CMLE) {Acinetobacter calcoaceticus [TaxId: 471]} Length = 444

class: All alpha proteins
fold: L-aspartase-like
superfamily: L-aspartase-like
family: L-aspartase/fumarase
domain: 3-carboxy-cis,cis-muconate cycloisomerase (CMLE)
species: Acinetobacter calcoaceticus [TaxId: 471]

 Score = 42.0 bits (97), Expect = 4e-05
 Identities = 7/34 (20%), Positives = 17/34 (50%)

Query: 12 LSTRYASKEMQHNFSDMKKFTTWRQLWIYLAEAQ 45
           ++ +  +++   FSD    +   +  + LA+AQ
Sbjct: 3  YASLFYQRDVTEIFSDRALVSYMVEAEVALAQAQ 36

>d1q5na_ a.127.1.1 (A:) 3-carboxy-cis,cis-muconate cycloisomerase (CMLE) {Acinetobacter calcoaceticus [TaxId: 471]} Length = 444

class: All alpha proteins
fold: L-aspartase-like
superfamily: L-aspartase-like
family: L-aspartase/fumarase
domain: 3-carboxy-cis,cis-muconate cycloisomerase (CMLE)
species: Acinetobacter calcoaceticus [TaxId: 471]

 Score = 42.0 bits (97), Expect = 4e-05
 Identities = 7/34 (20%), Positives = 17/34 (50%)

Query: 216 LSTRYASKEMQHNFSDMKKFTTWRQLWIYLAEAQ 249
            ++ +  +++   FSD    +   +  + LA+AQ
Sbjct: 3   YASLFYQRDVTEIFSDRALVSYMVEAEVALAQAQ 36

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	253
d1c3ca_	429	Adenylosuccinate lyase {Thermotoga maritima [TaxId	99.49
d1dofa_	402	Adenylosuccinate lyase {Archaeon Pyrobaculum aerop	99.44
d1f1oa_	408	Adenylosuccinate lyase {Bacillus subtilis [TaxId:	99.23
d1re5a_	448	3-carboxy-cis,cis-muconate cycloisomerase (CMLE) {	99.11
d1q5na_	444	3-carboxy-cis,cis-muconate cycloisomerase (CMLE) {	98.75

>d1c3ca_ a.127.1.1 (A:) Adenylosuccinate lyase {Thermotoga maritima [TaxId: 2336]}

class: All alpha proteins
fold: L-aspartase-like
superfamily: L-aspartase-like
family: L-aspartase/fumarase
domain: Adenylosuccinate lyase
species: Thermotoga maritima [TaxId: 2336]

Probab=99.49  E-value=1.2e-16  Score=145.24  Aligned_cols=92  Identities=16%  Similarity=0.267  Sum_probs=80.6

Q ss_pred             cCCCCCHHHHhcCCchhHHHHHHHHHHHHHHHHHc-CC-CCccccCccccccccccceeeeccccceeeeeccc-eeecc
Q psy14320         13 STRYASKEMQHNFSDMKKFTTWRQLWIYLAEAQQS-GF-RNNIYIDPKHNFTLEADRCTVVDSRLGVELERQDD-VGKKR   89 (253)
Q Consensus        13 I~RYsspEMr~IWSeEnKfqtWLkVE~ALAeAqaE-GI-P~~ai~~Ik~~a~fDieRI~~~~~~~~ie~e~~~~-vaftr   89 (253)
                      |+||++|+|+.|||++++|+.|++||+|+|+|+++ |+ |+++.+.|++...+|++++..      +|.++.|| +||-+
T Consensus         1 i~rY~~~~~~~~fs~~~~~~~~~~ve~A~a~a~~~~g~ip~~~~~~I~~~~~~d~~~i~~------~e~~t~hdV~a~v~   74 (429)
T d1c3ca_           1 VERYSLSPMKDLWTEEAKYRRWLEVELAVTRAYEELGMIPKGVTERIRNNAKIDVELFKK------IEEKTNHDVVAFVE   74 (429)
T ss_dssp             CGGGCCTTHHHHTSHHHHHHHHHHHHHHHHHHHHHTTSSCTTHHHHHHHHCCCCHHHHHH------HHHHHCCHHHHHHH
T ss_pred             CCCCCcHHHHHHcCHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHhhCCCCHHHHHH------HHHHhCCCcHHHHH
Confidence            68999999999999999999999999999999999 95 999889998888888776665      88886555 99999


Q ss_pred             cccCCCCccCCCceeEEEecccccC
Q psy14320         90 SRSEEPEDCRGEEKVEVVLGGAGVD  114 (253)
Q Consensus        90 ~~se~~~~~~gee~~~v~~g~~~~~  114 (253)
                      .+.+.    +|+...|||||..--|
T Consensus        75 ~l~~~----~g~~~~~vH~G~Ts~D   95 (429)
T d1c3ca_          75 GIGSM----IGEDSRFFHYGLTSSD   95 (429)
T ss_dssp             HHHHH----HGGGGGGTTTTCCHHH
T ss_pred             HHHHH----cchhhccccCCCChHH
Confidence            98885    5899999999987644

>d1dofa_ a.127.1.1 (A:) Adenylosuccinate lyase {Archaeon Pyrobaculum aerophilum [TaxId: 13773]}

class: All alpha proteins
fold: L-aspartase-like
superfamily: L-aspartase-like
family: L-aspartase/fumarase
domain: Adenylosuccinate lyase
species: Archaeon Pyrobaculum aerophilum [TaxId: 13773]

Probab=99.44  E-value=3.3e-15  Score=134.75  Aligned_cols=94  Identities=20%  Similarity=0.235  Sum_probs=71.0

Q ss_pred             ccccccCCCCCHHHHhcCCchhHHHHHHHHHHHHHHHHHc-CC-CCccccCccccccccccceeeeccccceeeeeccc-
Q psy14320          8 YISPLSTRYASKEMQHNFSDMKKFTTWRQLWIYLAEAQQS-GF-RNNIYIDPKHNFTLEADRCTVVDSRLGVELERQDD-   84 (253)
Q Consensus         8 Y~sPMI~RYsspEMr~IWSeEnKfqtWLkVE~ALAeAqaE-GI-P~~ai~~Ik~~a~fDieRI~~~~~~~~ie~e~~~~-   84 (253)
                      |+||+..||++++|+.|||++++++.|++||+|+++|+++ |+ |.++.++|.. +.+|+++|.      ++|.+++|| 
T Consensus         1 ~~sP~d~ry~~~~~~~ifs~~~~~~~~l~ve~a~a~a~~e~G~ip~~~a~~i~~-~~~d~~~i~------~~e~~~~hdv   73 (402)
T d1dofa_           1 HVSPFDWRYGSEEIRRLFTNEAIINAYLEVERALVCALEELGVAERGCCEKVNK-ASVSADEVY------RLERETGHDI   73 (402)
T ss_dssp             CCCGGGTTSSCHHHHTTSSHHHHHHHHHHHHHHHHHHHHHTTSSCTTHHHHHHH-CCCCTTTC--------------CHH
T ss_pred             CcCCCccccCCHHHHHHcChHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHH-hccCHHHHH------HHHHHhCCCc
Confidence            6899999999999999999999999999999999999999 96 8877777763 456666544      588897666 


Q ss_pred             eeecccccCCCCccCCCceeEEEecccccC
Q psy14320         85 VGKKRSRSEEPEDCRGEEKVEVVLGGAGVD  114 (253)
Q Consensus        85 vaftr~~se~~~~~~gee~~~v~~g~~~~~  114 (253)
                      +|+-+.+.+.    .|  .+|||+|..--|
T Consensus        74 ~a~~~~l~~~----~~--~~~vH~G~TsnD   97 (402)
T d1dofa_          74 LSLVLLLEQK----SG--CRYVHYGATSND   97 (402)
T ss_dssp             HHHHHHHHHH----HC--CSCTTTTCCHHH
T ss_pred             hHHHHHHhhh----hH--HHHhhccCchHH
Confidence            8888888774    24  359999976543

>d1f1oa_ a.127.1.1 (A:) Adenylosuccinate lyase {Bacillus subtilis [TaxId: 1423]}

class: All alpha proteins
fold: L-aspartase-like
superfamily: L-aspartase-like
family: L-aspartase/fumarase
domain: Adenylosuccinate lyase
species: Bacillus subtilis [TaxId: 1423]

Probab=99.23  E-value=2.1e-13  Score=123.48  Aligned_cols=85  Identities=27%  Similarity=0.362  Sum_probs=74.4

Q ss_pred             HHHhcCCchhHHHHHHHHHHHHHHHHHc-CC-CCccccCccccccccccceeeeccccceeeeeccc-eeecccccCCCC
Q psy14320         20 EMQHNFSDMKKFTTWRQLWIYLAEAQQS-GF-RNNIYIDPKHNFTLEADRCTVVDSRLGVELERQDD-VGKKRSRSEEPE   96 (253)
Q Consensus        20 EMr~IWSeEnKfqtWLkVE~ALAeAqaE-GI-P~~ai~~Ik~~a~fDieRI~~~~~~~~ie~e~~~~-vaftr~~se~~~   96 (253)
                      ||+.|||++++++.|++||+|+++|+++ |+ |.++.+.|+++.++|++++.      ++|.++.|| +||-+.+.|.  
T Consensus         1 em~~ifs~~~~~~~~l~ve~A~a~a~~e~G~ip~~~~~~i~~~~~~~~~~~~------~~~~~~~~~v~a~~~~L~e~--   72 (408)
T d1f1oa_           1 EMSAIWTDENRFQAWLEVEILACEAWAELGVIPKEDVKVMRENASFDINRIL------EIEKDTRHDVVAFTRAVSES--   72 (408)
T ss_pred             ChHHHCCcHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHhCcCCHHHHH------HHHhhcCCcHHHHHHHHHHH--
Confidence            7999999999999999999999999999 95 88899999988888877654      488887566 8999999886  


Q ss_pred             ccCCCceeEEEecccccC
Q psy14320         97 DCRGEEKVEVVLGGAGVD  114 (253)
Q Consensus        97 ~~~gee~~~v~~g~~~~~  114 (253)
                        +|++.+|||+|-.--|
T Consensus        73 --~g~~~~~vH~G~SsnD   88 (408)
T d1f1oa_          73 --LGEERKWVHYGLTSTD   88 (408)
T ss_pred             --cCchhhhhcCCCCHHH
Confidence              4999999999987654

>d1re5a_ a.127.1.1 (A:) 3-carboxy-cis,cis-muconate cycloisomerase (CMLE) {Pseudomonas putida, strain KT2440 [TaxId: 303]}

class: All alpha proteins
fold: L-aspartase-like
superfamily: L-aspartase-like
family: L-aspartase/fumarase
domain: 3-carboxy-cis,cis-muconate cycloisomerase (CMLE)
species: Pseudomonas putida, strain KT2440 [TaxId: 303]

Probab=99.11  E-value=2.4e-13  Score=123.50  Aligned_cols=97  Identities=14%  Similarity=0.140  Sum_probs=74.7

Q ss_pred             ccCCCCCHHHHhcCCchhHHHHHHHHHHHHHHHHHc-CC-CCccccCccccc---cccccceeeeccccceeee-eccce
Q psy14320         12 LSTRYASKEMQHNFSDMKKFTTWRQLWIYLAEAQQS-GF-RNNIYIDPKHNF---TLEADRCTVVDSRLGVELE-RQDDV   85 (253)
Q Consensus        12 MI~RYsspEMr~IWSeEnKfqtWLkVE~ALAeAqaE-GI-P~~ai~~Ik~~a---~fDieRI~~~~~~~~ie~e-~~~~v   85 (253)
                      +..||++++|+.|||++++++.|++||+|+|+|+++ |+ |.++.++|.+..   .||++++.      +.+.+ .||++
T Consensus         4 ~~~~y~~~~~~~ifsd~~~~~~~l~ve~A~a~a~~e~G~ip~~~~~~I~~~~~~~~~d~~~~~------~~~~~~~~~~~   77 (448)
T d1re5a_           4 FDAYFTAPAMREIFSDRGRLQGMLDFEAALARAEASAGLVPHSAVAAIEAACQAERYDTGALA------NAIATAGNSAI   77 (448)
T ss_dssp             THHHHSCHHHHHHTSHHHHHHHHHHHHHHHHHHHHTTTSSCHHHHHHHHHHCCGGGSCHHHHH------HHHHHHSSSHH
T ss_pred             cccccCcHHHHHHhChHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHhccccCcCHHHHH------HHHhHhcCCcH
Confidence            346999999999999999999999999999999999 96 888777776543   34544443      35555 57668


Q ss_pred             eecccccCCCCccCCCceeEEEecccccC
Q psy14320         86 GKKRSRSEEPEDCRGEEKVEVVLGGAGVD  114 (253)
Q Consensus        86 aftr~~se~~~~~~gee~~~v~~g~~~~~  114 (253)
                      ++=+++.+.+.+-+|+..+|||+|..--|
T Consensus        78 ~~v~~~~~~~~~~~g~~~~~vH~G~TsnD  106 (448)
T d1re5a_          78 PLVKALGKVIATGVPEAERYVHLGATSQD  106 (448)
T ss_dssp             HHHHHHHHHHHHHCGGGGGGTTTTCCHHH
T ss_pred             HHHHHHHHHHhhcCcchHhHccCCCChhh
Confidence            77777666554556888999999976543

>d1q5na_ a.127.1.1 (A:) 3-carboxy-cis,cis-muconate cycloisomerase (CMLE) {Acinetobacter calcoaceticus [TaxId: 471]}

class: All alpha proteins
fold: L-aspartase-like
superfamily: L-aspartase-like
family: L-aspartase/fumarase
domain: 3-carboxy-cis,cis-muconate cycloisomerase (CMLE)
species: Acinetobacter calcoaceticus [TaxId: 471]

Probab=98.75  E-value=2.3e-11  Score=109.99  Aligned_cols=102  Identities=14%  Similarity=0.087  Sum_probs=75.6

Q ss_pred             ccCCCCCHHHHhcCCchhHHHHHHHHHHHHHHHHHc-CC-CCccccCccccccccccceeeeccccceeee-eccceeec
Q psy14320         12 LSTRYASKEMQHNFSDMKKFTTWRQLWIYLAEAQQS-GF-RNNIYIDPKHNFTLEADRCTVVDSRLGVELE-RQDDVGKK   88 (253)
Q Consensus        12 MI~RYsspEMr~IWSeEnKfqtWLkVE~ALAeAqaE-GI-P~~ai~~Ik~~a~fDieRI~~~~~~~~ie~e-~~~~vaft   88 (253)
                      +.+||++++|+.|||++++++.|++||+|+++|+++ |+ |.++.+.|.+..+..++.+.. |.+.+.+.. .|+.++|-
T Consensus         3 ~~~~~~~~~~~~ifsd~~~i~~~~~ve~a~a~a~~~~g~i~~~~~~~i~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~v   81 (444)
T d1q5na_           3 YASLFYQRDVTEIFSDRALVSYMVEAEVALAQAQAQVGVIPQSAATVIQRAAKTAIDKIDF-DALATATGLAGNIAIPFV   81 (444)
T ss_dssp             THHHHSCHHHHHHTSHHHHHHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHTTHHHHCCH-HHHHHHHHHHSSSHHHHH
T ss_pred             cccccCCHHHHHHcChHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHhCCH-HHHHHhhcccccchHHHH
Confidence            357999999999999999999999999999999999 96 888777776655433344333 444456655 45557776


Q ss_pred             ccccCCCCccCCCceeEEEecccccC
Q psy14320         89 RSRSEEPEDCRGEEKVEVVLGGAGVD  114 (253)
Q Consensus        89 r~~se~~~~~~gee~~~v~~g~~~~~  114 (253)
                      ..+..-.+++-++-..|||||..--|
T Consensus        82 ~~l~~~~~~~~~~~~~~vh~g~ts~D  107 (444)
T d1q5na_          82 KQLTAIVKDADEDAARYVHWGATSQD  107 (444)
T ss_dssp             HHHHHHHHTTCTTGGGGTTTTCCHHH
T ss_pred             HHHHHHHhhcCcchHHHhcCCCCchh
Confidence            65543333455677899999998766