Conserved Domains and Related Protein Families
Conserved Domains Detected by RPS-BLAST
Original result of RPS-BLAST against CDD database
ID Alignment Graph Length
Definition
E-value Query 124
cd03302 436
cd03302, Adenylsuccinate_lyase_2, Adenylsuccinate
6e-39 PRK08937 216
PRK08937, PRK08937, adenylosuccinate lyase; Provis
2e-22 cd01595 381
cd01595, Adenylsuccinate_lyase_like, Adenylsuccina
3e-21 COG0015 438
COG0015, PurB, Adenylosuccinate lyase [Nucleotide
8e-18 TIGR00928 435
TIGR00928, purB, adenylosuccinate lyase
2e-16 cd03302 436
cd03302, Adenylsuccinate_lyase_2, Adenylsuccinate
1e-11 cd01360 387
cd01360, Adenylsuccinate_lyase_1, Adenylsuccinate
3e-10 cd01595 381
cd01595, Adenylsuccinate_lyase_like, Adenylsuccina
7e-07 PRK08540 449
PRK08540, PRK08540, adenylosuccinate lyase; Review
1e-06 PRK08937 216
PRK08937, PRK08937, adenylosuccinate lyase; Provis
6e-06 TIGR00928 435
TIGR00928, purB, adenylosuccinate lyase
8e-06 smart00998 81
smart00998, ADSL_C, Adenylosuccinate lyase C-termi
3e-05 COG0015 438
COG0015, PurB, Adenylosuccinate lyase [Nucleotide
5e-05 PRK08470 442
PRK08470, PRK08470, adenylosuccinate lyase; Provis
1e-04 pfam10397 80
pfam10397, ADSL_C, Adenylosuccinate lyase C-termin
2e-04 cd01360 387
cd01360, Adenylsuccinate_lyase_1, Adenylsuccinate
3e-04 PRK08470 442
PRK08470, PRK08470, adenylosuccinate lyase; Provis
7e-04 cd01597 437
cd01597, pCLME, prokaryotic 3-carboxy-cis,cis-muco
0.003 PRK08540 449
PRK08540, PRK08540, adenylosuccinate lyase; Review
0.004
>gnl|CDD|176471 cd03302, Adenylsuccinate_lyase_2, Adenylsuccinate lyase (ASL)_subgroup 2
Back Hide alignment and domain information
Score = 134 bits (340), Expect = 6e-39
Identities = 50/68 (73%), Positives = 58/68 (85%)
Query: 2 KRLTLSESFLTTDCLLITLQNVLEGLVVYPKVIQRHIDQELPFMATENIIMAMVKAGGDR 61
+R+ + E+FL D +LITLQN+ EGLVVYPKVI+RHI QELPFMATENIIMA VKAGGDR
Sbjct: 321 RRIAIPEAFLAADAILITLQNISEGLVVYPKVIERHIRQELPFMATENIIMAAVKAGGDR 380
Query: 62 QVCHEKIR 69
Q HE+IR
Sbjct: 381 QDAHERIR 388
This subgroup contains mainly eukaryotic proteins similar to ASL, a member of the Lyase class I family. Members of this family for the most part catalyze similar beta-elimination reactions in which a C-N or C-O bond is cleaved with the release of fumarate as one of the products. These proteins are active as tetramers. The four active sites of the homotetrameric enzyme are each formed by residues from three different subunits. ASL catalyzes two steps in the de novo purine biosynthesis: the conversion of 5-aminoimidazole-(N-succinylocarboxamide) ribotide (SAICAR) into 5-aminoimidazole-4-carboxamide ribotide (AICAR) and, the conversion of adenylsuccinate (SAMP) into adenosine monophosphate (AMP). ASL deficiency has been linked to several pathologies including psychomotor retardation with autistic features, epilepsy and muscle wasting. Length = 436
>gnl|CDD|236352 PRK08937, PRK08937, adenylosuccinate lyase; Provisional
Back Show alignment and domain information
Score = 87.0 bits (216), Expect = 2e-22
Identities = 28/69 (40%), Positives = 47/69 (68%)
Query: 1 MKRLTLSESFLTTDCLLITLQNVLEGLVVYPKVIQRHIDQELPFMATENIIMAMVKAGGD 60
+R+ L ++FL D +L N+LE LVV+P+ I+R++D+ L F+ATE +++ +V+ G
Sbjct: 105 AERIALPDAFLALDYILNRFVNILENLVVFPENIERNLDKTLGFIATERVLLELVEKGMG 164
Query: 61 RQVCHEKIR 69
R+ HE IR
Sbjct: 165 REEAHELIR 173
>gnl|CDD|176467 cd01595, Adenylsuccinate_lyase_like, Adenylsuccinate lyase (ASL)_like
Back Show alignment and domain information
Score = 86.8 bits (216), Expect = 3e-21
Identities = 25/67 (37%), Positives = 41/67 (61%)
Query: 3 RLTLSESFLTTDCLLITLQNVLEGLVVYPKVIQRHIDQELPFMATENIIMAMVKAGGDRQ 62
R L ++FL D L LQ +LEGLVV P+ ++R++D + +E ++MA+ K G RQ
Sbjct: 308 RNILPDAFLLLDAALSRLQGLLEGLVVNPERMRRNLDLTWGLILSEAVMMALAKKGLGRQ 367
Query: 63 VCHEKIR 69
+E ++
Sbjct: 368 EAYELVK 374
This group contains ASL, prokaryotic-type 3-carboxy-cis,cis-muconate cycloisomerase (pCMLE), and related proteins. These proteins are members of the Lyase class I family. Members of this family for the most part catalyze similar beta-elimination reactions in which a C-N or C-O bond is cleaved with the release of fumarate as one of the products. These proteins are active as tetramers. The four active sites of the homotetrameric enzyme are each formed by residues from three different subunits. ASL catalyzes two steps in the de novo purine biosynthesis: the conversion of 5-aminoimidazole-(N-succinylocarboxamide) ribotide (SAICAR) into 5-aminoimidazole-4-carboxamide ribotide (AICAR) and; the conversion of adenylsuccinate (SAMP) into adenosine monophosphate (AMP). pCMLE catalyzes the cyclization of 3-carboxy-cis,cis-muconate (3CM) to 4-carboxy-muconolactone, in the beta-ketoadipate pathway. ASL deficiency has been linked to several pathologies including psychomotor retardation with autistic features, epilepsy and muscle wasting. Length = 381
>gnl|CDD|223094 COG0015, PurB, Adenylosuccinate lyase [Nucleotide transport and metabolism]
Back Show alignment and domain information
Score = 77.3 bits (191), Expect = 8e-18
Identities = 26/71 (36%), Positives = 45/71 (63%)
Query: 1 MKRLTLSESFLTTDCLLITLQNVLEGLVVYPKVIQRHIDQELPFMATENIIMAMVKAGGD 60
++R+ L ++F+ D L L NVLEGL V P+ ++R++D L +A+E +++A+ K G
Sbjct: 315 VERVILPDAFIAADGALNRLLNVLEGLEVNPERMRRNLDLTLGLIASERVMLALRKKGMG 374
Query: 61 RQVCHEKIRGA 71
R+ HE +R
Sbjct: 375 REEAHELVREK 385
>gnl|CDD|233192 TIGR00928, purB, adenylosuccinate lyase
Back Show alignment and domain information
Score = 73.5 bits (181), Expect = 2e-16
Identities = 23/67 (34%), Positives = 43/67 (64%)
Query: 3 RLTLSESFLTTDCLLITLQNVLEGLVVYPKVIQRHIDQELPFMATENIIMAMVKAGGDRQ 62
R+ L +SF+ D +L T V++ LVV P+ I R+++ L +A+E +++A+V+ G R+
Sbjct: 316 RIILPDSFILADIMLKTTLKVVKKLVVNPENILRNLELTLGLIASERVLIALVERGMGRE 375
Query: 63 VCHEKIR 69
+E +R
Sbjct: 376 EAYEIVR 382
This family consists of adenylosuccinate lyase, the enzyme that catalyzes step 8 in the purine biosynthesis pathway for de novo synthesis of IMP and also the final reaction in the two-step sequence from IMP to AMP [Purines, pyrimidines, nucleosides, and nucleotides, Purine ribonucleotide biosynthesis]. Length = 435
>gnl|CDD|176471 cd03302, Adenylsuccinate_lyase_2, Adenylsuccinate lyase (ASL)_subgroup 2
Back Show alignment and domain information
Score = 59.6 bits (145), Expect = 1e-11
Identities = 22/35 (62%), Positives = 29/35 (82%)
Query: 79 RRLTLSESFLTTDCLLITLQNVLKGLVVYPKVIQR 113
RR+ + E+FL D +LITLQN+ +GLVVYPKVI+R
Sbjct: 321 RRIAIPEAFLAADAILITLQNISEGLVVYPKVIER 355
This subgroup contains mainly eukaryotic proteins similar to ASL, a member of the Lyase class I family. Members of this family for the most part catalyze similar beta-elimination reactions in which a C-N or C-O bond is cleaved with the release of fumarate as one of the products. These proteins are active as tetramers. The four active sites of the homotetrameric enzyme are each formed by residues from three different subunits. ASL catalyzes two steps in the de novo purine biosynthesis: the conversion of 5-aminoimidazole-(N-succinylocarboxamide) ribotide (SAICAR) into 5-aminoimidazole-4-carboxamide ribotide (AICAR) and, the conversion of adenylsuccinate (SAMP) into adenosine monophosphate (AMP). ASL deficiency has been linked to several pathologies including psychomotor retardation with autistic features, epilepsy and muscle wasting. Length = 436
>gnl|CDD|176464 cd01360, Adenylsuccinate_lyase_1, Adenylsuccinate lyase (ASL)_subgroup 1
Back Show alignment and domain information
Score = 55.6 bits (135), Expect = 3e-10
Identities = 18/67 (26%), Positives = 42/67 (62%)
Query: 3 RLTLSESFLTTDCLLITLQNVLEGLVVYPKVIQRHIDQELPFMATENIIMAMVKAGGDRQ 62
R+ L ++ + D +L + VLE LVVYP+ ++R+++ + ++ +++A+V+ G R+
Sbjct: 307 RVILPDATILLDYILRRMTRVLENLVVYPENMRRNLNLTKGLIFSQRVLLALVEKGMSRE 366
Query: 63 VCHEKIR 69
+E ++
Sbjct: 367 EAYEIVQ 373
This subgroup contains bacterial and archeal proteins similar to ASL, a member of the Lyase class I family. Members of this family for the most part catalyze similar beta-elimination reactions in which a C-N or C-O bond is cleaved with the release of fumarate as one of the products. These proteins are active as tetramers. The four active sites of the homotetrameric enzyme are each formed by residues from three different subunits. ASL catalyzes two steps in the de novo purine biosynthesis: the conversion of 5-aminoimidazole-(N-succinylocarboxamide) ribotide (SAICAR) into 5-aminoimidazole-4-carboxamide ribotide (AICAR) and, the conversion of adenylsuccinate (SAMP) into adenosine monophosphate (AMP). Length = 387
>gnl|CDD|176467 cd01595, Adenylsuccinate_lyase_like, Adenylsuccinate lyase (ASL)_like
Back Show alignment and domain information
Score = 46.0 bits (110), Expect = 7e-07
Identities = 18/46 (39%), Positives = 27/46 (58%), Gaps = 1/46 (2%)
Query: 79 RRLTLSESFLTTDCLLITLQNVLKGLVVYPKVIQR-LNTLRVLINA 123
R L ++FL D L LQ +L+GLVV P+ ++R L+ LI +
Sbjct: 307 ERNILPDAFLLLDAALSRLQGLLEGLVVNPERMRRNLDLTWGLILS 352
This group contains ASL, prokaryotic-type 3-carboxy-cis,cis-muconate cycloisomerase (pCMLE), and related proteins. These proteins are members of the Lyase class I family. Members of this family for the most part catalyze similar beta-elimination reactions in which a C-N or C-O bond is cleaved with the release of fumarate as one of the products. These proteins are active as tetramers. The four active sites of the homotetrameric enzyme are each formed by residues from three different subunits. ASL catalyzes two steps in the de novo purine biosynthesis: the conversion of 5-aminoimidazole-(N-succinylocarboxamide) ribotide (SAICAR) into 5-aminoimidazole-4-carboxamide ribotide (AICAR) and; the conversion of adenylsuccinate (SAMP) into adenosine monophosphate (AMP). pCMLE catalyzes the cyclization of 3-carboxy-cis,cis-muconate (3CM) to 4-carboxy-muconolactone, in the beta-ketoadipate pathway. ASL deficiency has been linked to several pathologies including psychomotor retardation with autistic features, epilepsy and muscle wasting. Length = 381
>gnl|CDD|236283 PRK08540, PRK08540, adenylosuccinate lyase; Reviewed
Back Show alignment and domain information
Score = 45.7 bits (109), Expect = 1e-06
Identities = 26/75 (34%), Positives = 39/75 (52%), Gaps = 12/75 (16%)
Query: 3 RLTLSESFLTTDCLLITLQNVLEGLVVYPKVIQRHIDQELPFMATENIIMA------MVK 56
R+ ES + TD +L + VLEGL P+ I+R+++ T+ +IMA + K
Sbjct: 322 RIIFPESCVLTDHILKLMIKVLEGLRFNPENIRRNLE------LTKGLIMAEAVMIELAK 375
Query: 57 AGGDRQVCHEKIRGA 71
G RQ HE +R A
Sbjct: 376 RGMGRQEAHELVRQA 390
>gnl|CDD|236352 PRK08937, PRK08937, adenylosuccinate lyase; Provisional
Back Show alignment and domain information
Score = 43.1 bits (102), Expect = 6e-06
Identities = 14/37 (37%), Positives = 23/37 (62%)
Query: 77 PHRRLTLSESFLTTDCLLITLQNVLKGLVVYPKVIQR 113
R+ L ++FL D +L N+L+ LVV+P+ I+R
Sbjct: 104 SAERIALPDAFLALDYILNRFVNILENLVVFPENIER 140
>gnl|CDD|233192 TIGR00928, purB, adenylosuccinate lyase
Back Show alignment and domain information
Score = 43.1 bits (102), Expect = 8e-06
Identities = 15/35 (42%), Positives = 21/35 (60%)
Query: 79 RRLTLSESFLTTDCLLITLQNVLKGLVVYPKVIQR 113
R+ L +SF+ D +L T V+K LVV P+ I R
Sbjct: 315 ERIILPDSFILADIMLKTTLKVVKKLVVNPENILR 349
This family consists of adenylosuccinate lyase, the enzyme that catalyzes step 8 in the purine biosynthesis pathway for de novo synthesis of IMP and also the final reaction in the two-step sequence from IMP to AMP [Purines, pyrimidines, nucleosides, and nucleotides, Purine ribonucleotide biosynthesis]. Length = 435
>gnl|CDD|198066 smart00998, ADSL_C, Adenylosuccinate lyase C-terminus
Back Show alignment and domain information
Score = 39.0 bits (92), Expect = 3e-05
Identities = 6/28 (21%), Positives = 17/28 (60%)
Query: 42 LPFMATENIIMAMVKAGGDRQVCHEKIR 69
+ +E +++A+V+ G R+ +E ++
Sbjct: 1 GGLIFSERVLLALVEKGLGREEAYELVQ 28
Adenylosuccinate lyase catalyses two steps in the synthesis of purine nucleotides: the conversion of succinylaminoimidazole-carboxamide ribotide into aminoimidazole-carboxamide ribotide (the fifth step of de novo IMP biosynthesis); the formation of adenosine monophosphate (AMP) from adenylosuccinate (the final step in the synthesis of AMP from IMP). This entry represents the C-terminal, seven alpha-helical, domain of adenylosuccinate lyase. Length = 81
>gnl|CDD|223094 COG0015, PurB, Adenylosuccinate lyase [Nucleotide transport and metabolism]
Back Show alignment and domain information
Score = 40.7 bits (96), Expect = 5e-05
Identities = 17/47 (36%), Positives = 27/47 (57%), Gaps = 1/47 (2%)
Query: 79 RRLTLSESFLTTDCLLITLQNVLKGLVVYPKVIQR-LNTLRVLINAP 124
R+ L ++F+ D L L NVL+GL V P+ ++R L+ LI +
Sbjct: 316 ERVILPDAFIAADGALNRLLNVLEGLEVNPERMRRNLDLTLGLIASE 362
>gnl|CDD|181437 PRK08470, PRK08470, adenylosuccinate lyase; Provisional
Back Show alignment and domain information
Score = 39.7 bits (93), Expect = 1e-04
Identities = 19/61 (31%), Positives = 39/61 (63%)
Query: 2 KRLTLSESFLTTDCLLITLQNVLEGLVVYPKVIQRHIDQELPFMATENIIMAMVKAGGDR 61
+R L ++F+TTD +L L NV+E LVVYP+ + ++++ + ++ +++ + K G R
Sbjct: 309 ERFILPDAFITTDFMLHRLNNVIENLVVYPENMMKNLNLTGGLVFSQRVLLELPKKGVSR 368
Query: 62 Q 62
+
Sbjct: 369 E 369
>gnl|CDD|220731 pfam10397, ADSL_C, Adenylosuccinate lyase C-terminus
Back Show alignment and domain information
Score = 37.0 bits (87), Expect = 2e-04
Identities = 5/27 (18%), Positives = 16/27 (59%)
Query: 43 PFMATENIIMAMVKAGGDRQVCHEKIR 69
+ +E +++A+ + G R+ +E ++
Sbjct: 1 GLIMSERVLLALAEKGLGREEAYELVQ 27
This is the C-terminal seven alpha helices of the structure whose full length represents the enzyme adenylosuccinate lyase. This sequence lies C-terminal to the conserved motif necessary for beta-elimination reactions, Adenylosuccinate lyase catalyzes two steps in the synthesis of purine nucleotides: the conversion of succinylaminoimidazole-carboxamide ribotide into aminoimidazole-carboxamide ribotide, the eighth step of the de novo pathway, and the formation of adenosine monophosphate (AMP) from adenylosuccinate, the second step in the conversion of inosine monophosphate into AMP. Length = 80
>gnl|CDD|176464 cd01360, Adenylsuccinate_lyase_1, Adenylsuccinate lyase (ASL)_subgroup 1
Back Show alignment and domain information
Score = 38.7 bits (91), Expect = 3e-04
Identities = 16/43 (37%), Positives = 27/43 (62%), Gaps = 1/43 (2%)
Query: 80 RLTLSESFLTTDCLLITLQNVLKGLVVYPKVIQR-LNTLRVLI 121
R+ L ++ + D +L + VL+ LVVYP+ ++R LN + LI
Sbjct: 307 RVILPDATILLDYILRRMTRVLENLVVYPENMRRNLNLTKGLI 349
This subgroup contains bacterial and archeal proteins similar to ASL, a member of the Lyase class I family. Members of this family for the most part catalyze similar beta-elimination reactions in which a C-N or C-O bond is cleaved with the release of fumarate as one of the products. These proteins are active as tetramers. The four active sites of the homotetrameric enzyme are each formed by residues from three different subunits. ASL catalyzes two steps in the de novo purine biosynthesis: the conversion of 5-aminoimidazole-(N-succinylocarboxamide) ribotide (SAICAR) into 5-aminoimidazole-4-carboxamide ribotide (AICAR) and, the conversion of adenylsuccinate (SAMP) into adenosine monophosphate (AMP). Length = 387
>gnl|CDD|181437 PRK08470, PRK08470, adenylosuccinate lyase; Provisional
Back Show alignment and domain information
Score = 37.4 bits (87), Expect = 7e-04
Identities = 21/53 (39%), Positives = 33/53 (62%), Gaps = 8/53 (15%)
Query: 80 RLTLSESFLTTDCLLITLQNVLKGLVVYPK-VIQRLN-------TLRVLINAP 124
R L ++F+TTD +L L NV++ LVVYP+ +++ LN + RVL+ P
Sbjct: 310 RFILPDAFITTDFMLHRLNNVIENLVVYPENMMKNLNLTGGLVFSQRVLLELP 362
>gnl|CDD|176469 cd01597, pCLME, prokaryotic 3-carboxy-cis,cis-muconate cycloisomerase (CMLE)_like
Back Show alignment and domain information
Score = 35.7 bits (83), Expect = 0.003
Identities = 17/62 (27%), Positives = 29/62 (46%), Gaps = 1/62 (1%)
Query: 5 TLSESFLTTDCLLITLQNVLEGLVVYPKVIQRHIDQELPFMATENIIMAMVKAGGDRQVC 64
L E FL L + +L GL V ++ ++D + +E ++MA+ G RQ
Sbjct: 319 ALPEIFLLASGALEQAEFLLSGLEVNEDRMRANLDLTGGLILSEAVMMALAPKLG-RQEA 377
Query: 65 HE 66
H+
Sbjct: 378 HD 379
This subgroup contains pCLME and related proteins, and belongs to the Lyase class I family. Members of this family for the most part catalyze similar beta-elimination reactions in which a C-N or C-O bond is cleaved with the release of fumarate as one of the products. These proteins are active as tetramers. The four active sites of the homotetrameric enzyme are each formed by residues from three different subunits. CMLE catalyzes the cyclization of 3-carboxy-cis,cis-muconate (3CM) to 4-carboxy-muconolactone in the beta-ketoadipate pathway. This pathway is responsible for the catabolism of a variety of aromatic compounds into intermediates of the citric cycle in prokaryotic and eukaryotic micro-organisms. Length = 437
>gnl|CDD|236283 PRK08540, PRK08540, adenylosuccinate lyase; Reviewed
Back Show alignment and domain information
Score = 35.3 bits (82), Expect = 0.004
Identities = 23/60 (38%), Positives = 31/60 (51%), Gaps = 9/60 (15%)
Query: 73 NPLFPHRRLTLS--------ESFLTTDCLLITLQNVLKGLVVYPKVIQR-LNTLRVLINA 123
NPL+ R LT S ES + TD +L + VL+GL P+ I+R L + LI A
Sbjct: 307 NPLWDERDLTNSSCERIIFPESCVLTDHILKLMIKVLEGLRFNPENIRRNLELTKGLIMA 366
Conserved Domains Detected by HHsearch
Original result of HHsearch against CDD database
ID Alignment Graph Length
Definition
Probability Query
124
COG0015 438
PurB Adenylosuccinate lyase [Nucleotide transport
99.82 PRK07492 435
adenylosuccinate lyase; Provisional
99.74 PRK07380 431
adenylosuccinate lyase; Provisional
99.73 PRK08470 442
adenylosuccinate lyase; Provisional
99.72 cd03302 436
Adenylsuccinate_lyase_2 Adenylsuccinate lyase (ASL
99.65 PRK09285 456
adenylosuccinate lyase; Provisional
99.62 PRK09053 452
3-carboxy-cis,cis-muconate cycloisomerase; Provisi
99.59 PRK08937 216
adenylosuccinate lyase; Provisional
99.57 PRK06390 451
adenylosuccinate lyase; Provisional
99.53 PRK08540 449
adenylosuccinate lyase; Reviewed
99.51 PLN02848 458
adenylosuccinate lyase
99.45 TIGR00928 435
purB adenylosuccinate lyase. This family consists
99.44 cd01598 425
PurB PurB_like adenylosuccinases (adenylsuccinate
99.42 PF10397 81
ADSL_C: Adenylosuccinate lyase C-terminus; InterPr
99.4 cd01360 387
Adenylsuccinate_lyase_1 Adenylsuccinate lyase (ASL
99.39 KOG2700|consensus 481
99.38 PRK06705 502
argininosuccinate lyase; Provisional
99.36 cd01595 381
Adenylsuccinate_lyase_like Adenylsuccinate lyase (
99.35 cd01359 435
Argininosuccinate_lyase Argininosuccinate lyase (a
99.34 cd01597 437
pCLME prokaryotic 3-carboxy-cis,cis-muconate cyclo
99.33 PLN02646 474
argininosuccinate lyase
99.31 PRK12308 614
bifunctional argininosuccinate lyase/N-acetylgluta
99.25 TIGR00838 455
argH argininosuccinate lyase. This model describes
99.2 PRK00855 459
argininosuccinate lyase; Provisional
99.15 PRK04833 455
argininosuccinate lyase; Provisional
99.08 PRK02186 887
argininosuccinate lyase; Provisional
99.06 TIGR00979 458
fumC_II fumarate hydratase, class II. Putative fum
98.92 PLN00134 458
fumarate hydratase; Provisional
98.91 PRK00485 464
fumC fumarate hydratase; Reviewed
98.75 cd01362 455
Fumarase_classII Class II fumarases. This subgroup
98.72 PRK12273 472
aspA aspartate ammonia-lyase; Provisional
98.6 cd01357 450
Aspartase Aspartase. This subgroup contains Escher
98.58 TIGR00839 468
aspA aspartate ammonia-lyase. Fumarate hydratase s
98.57 PRK12425 464
fumarate hydratase; Provisional
98.53 PRK13353 473
aspartate ammonia-lyase; Provisional
98.42 PRK14515 479
aspartate ammonia-lyase; Provisional
98.41 cd01596 450
Aspartase_like aspartase (L-aspartate ammonia-lyas
98.4 COG0015 438
PurB Adenylosuccinate lyase [Nucleotide transport
97.03 COG0165 459
ArgH Argininosuccinate lyase [Amino acid transport
96.47 PF08328 115
ASL_C: Adenylosuccinate lyase C-terminal; InterPro
95.9 KOG2700|consensus 481
95.55 PRK08470 442
adenylosuccinate lyase; Provisional
93.95 PRK07380 431
adenylosuccinate lyase; Provisional
93.73 PRK07492 435
adenylosuccinate lyase; Provisional
93.51 PRK08937 216
adenylosuccinate lyase; Provisional
93.42 COG0114 462
FumC Fumarase [Energy production and conversion]
92.19 PRK09053 452
3-carboxy-cis,cis-muconate cycloisomerase; Provisi
90.4 KOG1316|consensus 464
89.82 cd03302 436
Adenylsuccinate_lyase_2 Adenylsuccinate lyase (ASL
89.24 PRK09285 456
adenylosuccinate lyase; Provisional
89.19 cd01360 387
Adenylsuccinate_lyase_1 Adenylsuccinate lyase (ASL
89.09 cd01598 425
PurB PurB_like adenylosuccinases (adenylsuccinate
88.92 cd01595 381
Adenylsuccinate_lyase_like Adenylsuccinate lyase (
88.89 PRK06389 434
argininosuccinate lyase; Provisional
88.86 PRK08540 449
adenylosuccinate lyase; Reviewed
88.2 PLN02848 458
adenylosuccinate lyase
87.89 TIGR00928 435
purB adenylosuccinate lyase. This family consists
87.27 cd01359 435
Argininosuccinate_lyase Argininosuccinate lyase (a
86.26 cd01357 450
Aspartase Aspartase. This subgroup contains Escher
85.7 PLN02646 474
argininosuccinate lyase
83.5 cd01597 437
pCLME prokaryotic 3-carboxy-cis,cis-muconate cyclo
83.48 PLN00134 458
fumarate hydratase; Provisional
81.42 PRK06390 451
adenylosuccinate lyase; Provisional
80.88
>COG0015 PurB Adenylosuccinate lyase [Nucleotide transport and metabolism]
Back Hide alignment and domain information
Probab=99.82 E-value=1.7e-20 Score=158.52 Aligned_cols=108 Identities=29% Similarity=0.421 Sum_probs=95.1
Q ss_pred CccchHhHHHHHHHHHHHHHHhhhhCCeeCHHHHHHHHHhhCCchHHHHHHHHHHHcCCCHHHHHHHHHHhcCccccCCc
Q psy14321 1 MKRLTLSESFLTTDCLLITLQNVLEGLVVYPKVIQRHIDQELPFMATENIIMAMVKAGGDRQVCHEKIRGALNPLFPHRR 80 (124)
Q Consensus 1 ~Ew~~lPe~~~~~~~aL~~~~~ll~gL~V~~~rM~~Nl~~t~glI~SE~vm~aLa~~~lgR~~Ah~~V~~~a~~A~~~~~ 80 (124)
+||+.||++|.+++++|.++..+++||+|||++|++|++.++|+|+||++|++|+++|+|||+||++|++.++.++++++
T Consensus 315 ver~~Lp~~~~~~~~aL~~~~~vl~~L~v~~~~m~~nL~~~~gli~se~v~~~l~~~g~~Re~a~elvr~~a~~~~~~~~ 394 (438)
T COG0015 315 VERVILPDAFIAADGALNRLLNVLEGLEVNPERMRRNLDLTLGLIASERVMLALRKKGMGREEAHELVREKAMKAWEQGK 394 (438)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhCeeCHHHHHHHHhhccchhhhHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhcc
Confidence 58999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cchhhhhhhHHHHHHHHHhhhcCCccCHH
Q psy14321 81 LTLSESFLTTDCLLITLQNVLKGLVVYPK 109 (124)
Q Consensus 81 ~~l~ea~l~~~~~l~~~~~v~~~l~v~~~ 109 (124)
..+ +.++.++.+.++++.=..--.++|.
T Consensus 395 ~~~-~~~l~~~~v~~~~~~~~~~~~~dp~ 422 (438)
T COG0015 395 EFL-ELLLADERVTKYLSEEELLELLDPA 422 (438)
T ss_pred chH-HHhccchhhhccCcHHHHHHcCCHH
Confidence 774 6667787777766543333333443
>PRK07492 adenylosuccinate lyase; Provisional
Back Show alignment and domain information
Probab=99.74 E-value=5.9e-18 Score=142.87 Aligned_cols=94 Identities=18% Similarity=0.304 Sum_probs=86.3
Q ss_pred CccchHhHHHHHHHHHHHHHHhhhhCCeeCHHHHHHHHHhhCCchHHHHHHHHHHHcCCCHHHHHHHHHHhcCccccCCc
Q psy14321 1 MKRLTLSESFLTTDCLLITLQNVLEGLVVYPKVIQRHIDQELPFMATENIIMAMVKAGGDRQVCHEKIRGALNPLFPHRR 80 (124)
Q Consensus 1 ~Ew~~lPe~~~~~~~aL~~~~~ll~gL~V~~~rM~~Nl~~t~glI~SE~vm~aLa~~~lgR~~Ah~~V~~~a~~A~~~~~ 80 (124)
.||..+|+++.++++++..+..+++||+||++||++|++.++|+++||.++++|+++|+||++||++|++++++++++++
T Consensus 311 ~e~~~lp~~~~~~~~~l~~~~~~l~~L~v~~~rm~~nl~~~~g~i~ae~~~~~L~~~g~~r~~Ah~~V~~~~~~a~~~~~ 390 (435)
T PRK07492 311 VERMIGPDATITLDFALNRLAGVIEKLVVYPENMLKNLNKFGGLVHSQRVLLALTQAGVSREDAYRLVQRNAMKVWEQGG 390 (435)
T ss_pred HhhhHHHHHHHHHHHHHHHHHHHHccCEECHHHHHHHHhhcCChhHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHhCC
Confidence 48999999999999999999999999999999999999999999999999999999899999999999999999999887
Q ss_pred cchhhhhhhHHHHHH
Q psy14321 81 LTLSESFLTTDCLLI 95 (124)
Q Consensus 81 ~~l~ea~l~~~~~l~ 95 (124)
++.|.+..++.+-.
T Consensus 391 -~l~e~l~~~~~~~~ 404 (435)
T PRK07492 391 -DFLEELKADPEVRA 404 (435)
T ss_pred -CHHHHHhCCHHhHh
Confidence 56687666554433
>PRK07380 adenylosuccinate lyase; Provisional
Back Show alignment and domain information
Probab=99.73 E-value=1.2e-17 Score=140.90 Aligned_cols=92 Identities=13% Similarity=0.309 Sum_probs=85.4
Q ss_pred CccchHhHHHHHHHHHHHHHHhhhhCCeeCHHHHHHHHHhhCCchHHHHHHHHHHHcCCCHHHHHHHHHHhcCcccc-CC
Q psy14321 1 MKRLTLSESFLTTDCLLITLQNVLEGLVVYPKVIQRHIDQELPFMATENIIMAMVKAGGDRQVCHEKIRGALNPLFP-HR 79 (124)
Q Consensus 1 ~Ew~~lPe~~~~~~~aL~~~~~ll~gL~V~~~rM~~Nl~~t~glI~SE~vm~aLa~~~lgR~~Ah~~V~~~a~~A~~-~~ 79 (124)
+||..+|+++.++++++..+..+++||+||++||++|++.++|+++||.++++|+++|+||++||++|+++++++++ ++
T Consensus 308 ~e~~~l~~~~~~~~~~l~~~~~~l~~L~v~~~rm~~nl~~~~g~~~ae~~~~~Lv~~gl~r~~Ah~~V~~~~~~a~~~~~ 387 (431)
T PRK07380 308 VERVMLPDCSILLHFMLREMTDLVKNLLVYPENMRRNMNIYGGVVFSQRVLLALVEKGMSREEAYRLVQKNAHTAWNTEG 387 (431)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHccCEECHHHHHHHHHhcCChHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHhC
Confidence 37999999999999999999999999999999999999999999999999999999899999999999999999999 88
Q ss_pred ccchhhhhhhHHHH
Q psy14321 80 RLTLSESFLTTDCL 93 (124)
Q Consensus 80 ~~~l~ea~l~~~~~ 93 (124)
+ ++.|.+..++.+
T Consensus 388 ~-~l~e~l~~~~~~ 400 (431)
T PRK07380 388 G-NFRANLEADPEV 400 (431)
T ss_pred C-CHHHHHHcChHh
Confidence 6 677886665544
>PRK08470 adenylosuccinate lyase; Provisional
Back Show alignment and domain information
Probab=99.72 E-value=2.1e-17 Score=139.63 Aligned_cols=93 Identities=23% Similarity=0.457 Sum_probs=84.3
Q ss_pred CccchHhHHHHHHHHHHHHHHhhhhCCeeCHHHHHHHHHhhCCchHHHHHHHHHHHcCCCHHHHHHHHHHhcCccccC--
Q psy14321 1 MKRLTLSESFLTTDCLLITLQNVLEGLVVYPKVIQRHIDQELPFMATENIIMAMVKAGGDRQVCHEKIRGALNPLFPH-- 78 (124)
Q Consensus 1 ~Ew~~lPe~~~~~~~aL~~~~~ll~gL~V~~~rM~~Nl~~t~glI~SE~vm~aLa~~~lgR~~Ah~~V~~~a~~A~~~-- 78 (124)
.||..+|++|.++++++..+..+++||+||++||++|++.++|+++||.++++|+++|+||++||++|++++++++++
T Consensus 308 ~e~~~l~~~~~~~~~~l~~~~~~l~~l~v~~~rm~~nl~~~~g~~~ae~l~~~L~~~G~~~~~Ah~~V~~~~~~a~~~~~ 387 (442)
T PRK08470 308 VERFILPDAFITTDFMLHRLNNVIENLVVYPENMMKNLNLTGGLVFSQRVLLELPKKGVSREDAYKIVQRNAMKVWEDLQ 387 (442)
T ss_pred HHhhhHHHHHHHHHHHHHHHHHHHccCEECHHHHHHHHHhccChHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHhh
Confidence 379999999999999999999999999999999999999999999999999999998999999999999999999998
Q ss_pred -Cccc--------hhhhhhhHHHH
Q psy14321 79 -RRLT--------LSESFLTTDCL 93 (124)
Q Consensus 79 -~~~~--------l~ea~l~~~~~ 93 (124)
|+++ +.|.+..++.+
T Consensus 388 ~~~~~~~~~~~~~l~~~l~~~~~~ 411 (442)
T PRK08470 388 QGKAAINEKGESLFLQALLNDEDL 411 (442)
T ss_pred cCCCccccccHHHHHHHHhcCHHh
Confidence 8751 66765554433
>cd03302 Adenylsuccinate_lyase_2 Adenylsuccinate lyase (ASL)_subgroup 2
Back Show alignment and domain information
Probab=99.65 E-value=1.8e-16 Score=133.67 Aligned_cols=89 Identities=58% Similarity=0.840 Sum_probs=83.0
Q ss_pred CccchHhHHHHHHHHHHHHHHhhhhCCeeCHHHHHHHHHhhCCchHHHHHHHHHHHcCCCHHHHHHHHHHhcCccccC--
Q psy14321 1 MKRLTLSESFLTTDCLLITLQNVLEGLVVYPKVIQRHIDQELPFMATENIIMAMVKAGGDRQVCHEKIRGALNPLFPH-- 78 (124)
Q Consensus 1 ~Ew~~lPe~~~~~~~aL~~~~~ll~gL~V~~~rM~~Nl~~t~glI~SE~vm~aLa~~~lgR~~Ah~~V~~~a~~A~~~-- 78 (124)
+||..+|+++.++++++..+..+++||+||++||++|++.++|+++||+++++|+++|+||++||++|++++++++++
T Consensus 320 ~~~~~l~~~~~~~~~~l~~~~~~l~~l~v~~~rm~~~l~~~~g~~~se~~~~~L~~~g~~~~~Ah~~v~~~~~~~~~~~~ 399 (436)
T cd03302 320 NRRIAIPEAFLAADAILITLQNISEGLVVYPKVIERHIRQELPFMATENIIMAAVKAGGDRQDAHERIRVLSHQAAAVVK 399 (436)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHcCCEECHHHHHHHHHhccChHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHhh
Confidence 378999999999999999999999999999999999999999999999999999998999999999999999999998
Q ss_pred ----CccchhhhhhhH
Q psy14321 79 ----RRLTLSESFLTT 90 (124)
Q Consensus 79 ----~~~~l~ea~l~~ 90 (124)
++ ++.|.+..+
T Consensus 400 ~~~~~~-~~~~~l~~~ 414 (436)
T cd03302 400 QEGGDN-DLIERIKND 414 (436)
T ss_pred cccCCC-CHHHHHhcC
Confidence 76 666875543
This subgroup contains mainly eukaryotic proteins similar to ASL, a member of the Lyase class I family. Members of this family for the most part catalyze similar beta-elimination reactions in which a C-N or C-O bond is cleaved with the release of fumarate as one of the products. These proteins are active as tetramers. The four active sites of the homotetrameric enzyme are each formed by residues from three different subunits. ASL catalyzes two steps in the de novo purine biosynthesis: the conversion of 5-aminoimidazole-(N-succinylocarboxamide) ribotide (SAICAR) into 5-aminoimidazole-4-carboxamide ribotide (AICAR) and, the conversion of adenylsuccinate (SAMP) into adenosine monophosphate (AMP). ASL deficiency has been linked to several pathologies including psychomotor retardation with autistic features, epilepsy and muscle wasting.
>PRK09285 adenylosuccinate lyase; Provisional
Back Show alignment and domain information
Probab=99.62 E-value=1.6e-15 Score=128.82 Aligned_cols=86 Identities=16% Similarity=0.037 Sum_probs=79.8
Q ss_pred CccchHhHHHHHHHHHHHHHHhhhhCCeeCHHHHHHHHHhhCCchHHHHHHHHHHHcCCCHHHHHHHHHHhcCccccCCc
Q psy14321 1 MKRLTLSESFLTTDCLLITLQNVLEGLVVYPKVIQRHIDQELPFMATENIIMAMVKAGGDRQVCHEKIRGALNPLFPHRR 80 (124)
Q Consensus 1 ~Ew~~lPe~~~~~~~aL~~~~~ll~gL~V~~~rM~~Nl~~t~glI~SE~vm~aLa~~~lgR~~Ah~~V~~~a~~A~~~~~ 80 (124)
+||.. |+++.++++++..+..+++||+||++||++|++.++| ++||++++.|++ +||++||++|+++++.+++++.
T Consensus 342 ~e~~~-~~~~~~~~~~l~~~~~~l~~L~V~~~rm~~nl~~~~~-~~sE~~~~~l~~--~gr~~A~~~v~~~~~~~~~~~~ 417 (456)
T PRK09285 342 VLRNL-GVAFGYSLIAYDSLLKGLGKLEVNEARLAEDLDANWE-VLAEPIQTVMRR--YGIENPYEKLKELTRGKRITAE 417 (456)
T ss_pred hhcch-HHHHHHHHHHHHHHHHHHccCEECHHHHHHHHHhcCc-chHHHHHHHHHH--hChHhHHHHHHHHHHHHHhccC
Confidence 48998 9999999999999999999999999999999999999 999999999997 9999999999999999999887
Q ss_pred cchhhh---hhhHH
Q psy14321 81 LTLSES---FLTTD 91 (124)
Q Consensus 81 ~~l~ea---~l~~~ 91 (124)
++.|. +..++
T Consensus 418 -~~~e~~~~l~~~~ 430 (456)
T PRK09285 418 -ALREFIDGLDLPE 430 (456)
T ss_pred -CHHHHHHHhcCCH
Confidence 56677 65544
>PRK09053 3-carboxy-cis,cis-muconate cycloisomerase; Provisional
Back Show alignment and domain information
Probab=99.59 E-value=2.2e-15 Score=127.52 Aligned_cols=87 Identities=18% Similarity=0.224 Sum_probs=81.4
Q ss_pred ccchHhHHHHHHHHHHHHHHhhhhCCeeCHHHHHHHHHhhCCchHHHHHHHHHHHcCCCHHHHHHHHHHhcCccccCCcc
Q psy14321 2 KRLTLSESFLTTDCLLITLQNVLEGLVVYPKVIQRHIDQELPFMATENIIMAMVKAGGDRQVCHEKIRGALNPLFPHRRL 81 (124)
Q Consensus 2 Ew~~lPe~~~~~~~aL~~~~~ll~gL~V~~~rM~~Nl~~t~glI~SE~vm~aLa~~~lgR~~Ah~~V~~~a~~A~~~~~~ 81 (124)
||..+|++|.++++++..+..+++||+||++||++|++.+.|+++||++|+.|++ .+||++||++|+++++.+.++|+
T Consensus 325 ~~~~l~~~~~~~~~al~~~~~~l~~l~v~~erm~~~l~~s~~~~~ae~~~~~La~-~lgr~~Ah~iV~~~~~~a~~~g~- 402 (452)
T PRK09053 325 EWDTLPELACLAAGALAQMAQIVEGLEVDAARMRANLDLTHGLILAEAVMLALAD-RIGRLDAHHLVEQASKRAVAEGR- 402 (452)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHcCCEECHHHHHHHHHhcCCHHHHHHHHHHHHh-ccCHHHHHHHHHHHHHHHHHHCC-
Confidence 6889999999999999999999999999999999999999999999999999999 59999999999999999999887
Q ss_pred chhhhhhhH
Q psy14321 82 TLSESFLTT 90 (124)
Q Consensus 82 ~l~ea~l~~ 90 (124)
++.|.+..+
T Consensus 403 ~~~~~~~~~ 411 (452)
T PRK09053 403 HLRDVLAED 411 (452)
T ss_pred CHHHHHHhC
Confidence 666775554
>PRK08937 adenylosuccinate lyase; Provisional
Back Show alignment and domain information
Probab=99.57 E-value=1.3e-14 Score=111.18 Aligned_cols=88 Identities=34% Similarity=0.615 Sum_probs=81.6
Q ss_pred ccchHhHHHHHHHHHHHHHHhhhhCCeeCHHHHHHHHHhhCCchHHHHHHHHHHHcCCCHHHHHHHHHHhcCccccCCcc
Q psy14321 2 KRLTLSESFLTTDCLLITLQNVLEGLVVYPKVIQRHIDQELPFMATENIIMAMVKAGGDRQVCHEKIRGALNPLFPHRRL 81 (124)
Q Consensus 2 Ew~~lPe~~~~~~~aL~~~~~ll~gL~V~~~rM~~Nl~~t~glI~SE~vm~aLa~~~lgR~~Ah~~V~~~a~~A~~~~~~ 81 (124)
||..+|++|..+.+++..+..+++||+||++||++|++.+.|++.+|.++++|++.|+||++||+.|+++++.+.+++.
T Consensus 106 ~~~~l~~~~~~~~~~l~~~~~~l~~l~v~~~rm~~~~~~~~~~~~a~~l~~~L~~~g~~~~~Ah~~v~~~~~~~~~~g~- 184 (216)
T PRK08937 106 ERIALPDAFLALDYILNRFVNILENLVVFPENIERNLDKTLGFIATERVLLELVEKGMGREEAHELIREKAMEAWKNQK- 184 (216)
T ss_pred HhhHHHHHHHHHHHHHHHHHHHHccCEECHHHHHHHHHHhcChHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHhCC-
Confidence 6889999999999999999999999999999999999999999999999999998799999999999999999998886
Q ss_pred chhhhhhhH
Q psy14321 82 TLSESFLTT 90 (124)
Q Consensus 82 ~l~ea~l~~ 90 (124)
++.|.+..+
T Consensus 185 ~~~~~~~~~ 193 (216)
T PRK08937 185 DLRELLEAD 193 (216)
T ss_pred CHHHHHHhC
Confidence 566764544
>PRK06390 adenylosuccinate lyase; Provisional
Back Show alignment and domain information
Probab=99.53 E-value=2.2e-14 Score=121.50 Aligned_cols=88 Identities=24% Similarity=0.373 Sum_probs=81.1
Q ss_pred CccchHhHHHHHHHHHHHHHHhhhhCCeeCHHHHHHHHHhhCCchHHHHHHHHHHHcCCCHHHHHHHHHHhcCccccCCc
Q psy14321 1 MKRLTLSESFLTTDCLLITLQNVLEGLVVYPKVIQRHIDQELPFMATENIIMAMVKAGGDRQVCHEKIRGALNPLFPHRR 80 (124)
Q Consensus 1 ~Ew~~lPe~~~~~~~aL~~~~~ll~gL~V~~~rM~~Nl~~t~glI~SE~vm~aLa~~~lgR~~Ah~~V~~~a~~A~~~~~ 80 (124)
.||..+|+.+.+++.++..+..+++||+||++||++|++. +|.++||.+++.|++.|+||++||++|+++++++.++|+
T Consensus 320 ~e~~~~~~~~~~~~~~l~~~~~~l~~l~v~~~rm~~~l~~-~~~~~se~la~~L~~~G~~~~~Ah~~v~~~~~~a~~~g~ 398 (451)
T PRK06390 320 LERFTIPYASILIDYVLYNMNDVLSHLIIKEDEIRRNLES-DDSIMSESIVRALTLSGMPRQDAHEFVRRASMEARSNGK 398 (451)
T ss_pred HHHhhHHHHHHHHHHHHHHHHHHHcCCEECHHHHHHHHhc-cchhhHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHhCC
Confidence 3788899999999999999999999999999999999999 999999999999999889999999999999999999886
Q ss_pred cchhhhhhhH
Q psy14321 81 LTLSESFLTT 90 (124)
Q Consensus 81 ~~l~ea~l~~ 90 (124)
++.|.+...
T Consensus 399 -~l~~~~~~~ 407 (451)
T PRK06390 399 -SLKSSLIEA 407 (451)
T ss_pred -CHHHHHHhC
Confidence 576764443
>PRK08540 adenylosuccinate lyase; Reviewed
Back Show alignment and domain information
Probab=99.51 E-value=6.9e-14 Score=118.24 Aligned_cols=89 Identities=30% Similarity=0.452 Sum_probs=82.3
Q ss_pred CccchHhHHHHHHHHHHHHHHhhhhCCeeCHHHHHHHHHhhCCchHHHHHHHHHHHcCCCHHHHHHHHHHhcCccccCCc
Q psy14321 1 MKRLTLSESFLTTDCLLITLQNVLEGLVVYPKVIQRHIDQELPFMATENIIMAMVKAGGDRQVCHEKIRGALNPLFPHRR 80 (124)
Q Consensus 1 ~Ew~~lPe~~~~~~~aL~~~~~ll~gL~V~~~rM~~Nl~~t~glI~SE~vm~aLa~~~lgR~~Ah~~V~~~a~~A~~~~~ 80 (124)
+||..+|+++.++++++..+..+++||+||++||++|++.++|++.||.+++.|++.|+|+++||++|.+++..+.++|+
T Consensus 320 ~e~~~l~~~~~~~~~~l~~~~~~l~~l~v~~~rm~~~l~~~~~~~~ae~la~~L~~~glg~~~Ah~~v~~l~~~a~~~g~ 399 (449)
T PRK08540 320 CERIIFPESCVLTDHILKLMIKVLEGLRFNPENIRRNLELTKGLIMAEAVMIELAKRGMGRQEAHELVRQAAMKAHEEGR 399 (449)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHccCEECHHHHHHHHHHhcCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHhCC
Confidence 37999999999999999999999999999999999999999999999999999999899999999999999999998886
Q ss_pred cchhhhhhhH
Q psy14321 81 LTLSESFLTT 90 (124)
Q Consensus 81 ~~l~ea~l~~ 90 (124)
++.|.+...
T Consensus 400 -~l~e~~~~~ 408 (449)
T PRK08540 400 -HLKEVLLED 408 (449)
T ss_pred -CHHHHHHhC
Confidence 566764443
>PLN02848 adenylosuccinate lyase
Back Show alignment and domain information
Probab=99.45 E-value=4.3e-13 Score=114.23 Aligned_cols=70 Identities=14% Similarity=0.017 Sum_probs=67.2
Q ss_pred CccchHhHHHHHHHHHHHHHHhhhhCCeeCHHHHHHHHHhhCCchHHHHHHHHHHHcCCCHHHHHHHHHHhcCc
Q psy14321 1 MKRLTLSESFLTTDCLLITLQNVLEGLVVYPKVIQRHIDQELPFMATENIIMAMVKAGGDRQVCHEKIRGALNP 74 (124)
Q Consensus 1 ~Ew~~lPe~~~~~~~aL~~~~~ll~gL~V~~~rM~~Nl~~t~glI~SE~vm~aLa~~~lgR~~Ah~~V~~~a~~ 74 (124)
+||.. |++|.++++++..+..+++||+||++||++|++.+.|+ +||.+++.|++ +||++||++|+++++.
T Consensus 345 ~e~~~-~~~~~~~~~al~~~~~~l~~L~v~~~rm~~nl~~~~~~-~sE~~~~~l~~--~G~~~A~e~v~~~~~~ 414 (458)
T PLN02848 345 VLRNM-GVGLGHSLLAYKSTLRGIGKLQVNEARLAEDLDQTWEV-LAEPIQTVMRR--YGVPEPYEKLKELTRG 414 (458)
T ss_pred hhccH-HHHHHHHHHHHHHHHHHHccCEECHHHHHHHHHccchh-HHHHHHHHHHH--hChHHHHHHHHHHHHH
Confidence 48888 99999999999999999999999999999999999999 99999999997 8999999999999965
>TIGR00928 purB adenylosuccinate lyase
Back Show alignment and domain information
Probab=99.44 E-value=3e-13 Score=113.91 Aligned_cols=87 Identities=30% Similarity=0.439 Sum_probs=80.2
Q ss_pred ccchHhHHHHHHHHHHHHHHhhhhCCeeCHHHHHHHHHhhCCchHHHHHHHHHHHcCCCHHHHHHHHHHhcCcccc-CCc
Q psy14321 2 KRLTLSESFLTTDCLLITLQNVLEGLVVYPKVIQRHIDQELPFMATENIIMAMVKAGGDRQVCHEKIRGALNPLFP-HRR 80 (124)
Q Consensus 2 Ew~~lPe~~~~~~~aL~~~~~ll~gL~V~~~rM~~Nl~~t~glI~SE~vm~aLa~~~lgR~~Ah~~V~~~a~~A~~-~~~ 80 (124)
||.++|+++.++.+++..+..+++||+||++||++|++.+.|++.++.+++.|++.|+||++||++|++++..+.+ ++.
T Consensus 315 ~~~~l~~~~~~~~~~l~~~~~~l~~l~v~~~rm~~~l~~~~~~~~a~~la~~L~~~g~g~~~Ah~~v~~~~~~a~~~~~~ 394 (435)
T TIGR00928 315 ERIILPDSFILADIMLKTTLKVVKKLVVNPENILRNLELTLGLIASERVLIALVERGMGREEAYEIVRELAMGAAEVDEP 394 (435)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHcCCEECHHHHHHHHHhccChHhHHHHHHHHHHhCCChhhHHHHHHHHHHHHHHcccc
Confidence 6778999999999999999999999999999999999999999999999999998899999999999999999988 775
Q ss_pred cchhhhhhh
Q psy14321 81 LTLSESFLT 89 (124)
Q Consensus 81 ~~l~ea~l~ 89 (124)
++.+.+..
T Consensus 395 -~l~~~~~~ 402 (435)
T TIGR00928 395 -DLLEFLLA 402 (435)
T ss_pred -cHHHHHhh
Confidence 56565444
This family consists of adenylosuccinate lyase, the enzyme that catalyzes step 8 in the purine biosynthesis pathway for de novo synthesis of IMP and also the final reaction in the two-step sequence from IMP to AMP.
>cd01598 PurB PurB_like adenylosuccinases (adenylsuccinate lyase, ASL)
Back Show alignment and domain information
Probab=99.42 E-value=5.1e-13 Score=112.86 Aligned_cols=70 Identities=16% Similarity=0.077 Sum_probs=67.0
Q ss_pred CccchHhHHHHHHHHHHHHHHhhhhCCeeCHHHHHHHHHhhCCchHHHHHHHHHHHcCCCHHHHHHHHHHhcCc
Q psy14321 1 MKRLTLSESFLTTDCLLITLQNVLEGLVVYPKVIQRHIDQELPFMATENIIMAMVKAGGDRQVCHEKIRGALNP 74 (124)
Q Consensus 1 ~Ew~~lPe~~~~~~~aL~~~~~ll~gL~V~~~rM~~Nl~~t~glI~SE~vm~aLa~~~lgR~~Ah~~V~~~a~~ 74 (124)
+||.. |+++.+++++++.+..+++||+||++||++|++.++| ++||.+|+.|++ +||++||++|+++++-
T Consensus 320 ~e~~~-~~~~~~~~~al~~~~~ll~~L~v~~~rm~~nl~~~~~-i~sE~~~~~l~~--~gr~~Ah~~V~~~~~~ 389 (425)
T cd01598 320 VLRNI-GVAFGHSLIAYKSLLRGLDKLELNEARLLEDLDANWE-VLAEPIQTVMRR--YGIPNPYEKLKDLTRG 389 (425)
T ss_pred hhccH-HHHHHHHHHHHHHHHHHHccCEECHHHHHHHHHhCcC-HHHHHHHHHHHh--cChHhHHHHHHHHhCC
Confidence 38888 9999999999999999999999999999999999999 999999999996 9999999999999973
This subgroup contains EcASL, the product of the purB gene in Escherichia coli, and related proteins. It is a member of the Lyase class I family of the Lyase_I superfamily. Members of the Lyase class I family function as homotetramers to catalyze similar beta-elimination reactions in which a Calpha-N or Calpha-O bond is cleaved with the subsequent release of fumarate as one of the products. The four active sites of the homotetrameric enzyme are each formed by residues from three different subunits. ASL catalyzes two non-sequential steps in the de novo purine biosynthesis pathway: the conversion of 5-aminoimidazole-(N-succinylocarboxamide) ribotide (SAICAR) into 5-aminoimidazole-4-carboxamide ribotide (AICAR) and; the conversion of adenylsuccinate (SAMP) into adenosine monophosphate (AMP).
>PF10397 ADSL_C: Adenylosuccinate lyase C-terminus; InterPro: IPR019468 Adenylosuccinate lyase catalyses two steps in the synthesis of purine nucleotides: the conversion of succinylaminoimidazole-carboxamide ribotide into aminoimidazole-carboxamide ribotide (the fifth step of de novo IMP biosynthesis); the formation of adenosine monophosphate (AMP) from adenylosuccinate (the final step in the synthesis of AMP from IMP) []
Back Show alignment and domain information
Probab=99.40 E-value=1.2e-13 Score=92.18 Aligned_cols=52 Identities=23% Similarity=0.334 Sum_probs=45.1
Q ss_pred CCchHHHHHHHHHHHcCCCHHHHHHHHHHhcCccccCCccchhhhhhhHHHHH
Q psy14321 42 LPFMATENIIMAMVKAGGDRQVCHEKIRGALNPLFPHRRLTLSESFLTTDCLL 94 (124)
Q Consensus 42 ~glI~SE~vm~aLa~~~lgR~~Ah~~V~~~a~~A~~~~~~~l~ea~l~~~~~l 94 (124)
+|+|+||++|++|+++|+||++||++|++++++|++++. +|.|++..+..+-
T Consensus 1 ~Gli~SE~v~~~L~~~G~gR~~Ah~lv~~~a~~a~~~~~-~l~e~l~~d~~i~ 52 (81)
T PF10397_consen 1 GGLIFSERVMLALAEKGLGRQEAHELVQEAAMEAWENGR-DLREVLLADPEIA 52 (81)
T ss_dssp TTGGGHHHHHHHHHHTTH-HHHHHHHHHHHHHHHHHTTS--HHHHHCTTHHHH
T ss_pred CcchHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHHCC-CHHHHHHCCHHHH
Confidence 699999999999999889999999999999999999987 6779877666664
This entry represents the C-terminal, seven alpha-helical, domain of adenylosuccinate lyase [].; PDB: 1YIS_A 1C3U_B 1C3C_A 3C8T_A 2PFM_B 1RE5_D 1Q5N_A 2VD6_D 2J91_B 2X75_A.
>cd01360 Adenylsuccinate_lyase_1 Adenylsuccinate lyase (ASL)_subgroup 1
Back Show alignment and domain information
Probab=99.39 E-value=1.3e-12 Score=108.83 Aligned_cols=69 Identities=26% Similarity=0.514 Sum_probs=67.7
Q ss_pred ccchHhHHHHHHHHHHHHHHhhhhCCeeCHHHHHHHHHhhCCchHHHHHHHHHHHcCCCHHHHHHHHHH
Q psy14321 2 KRLTLSESFLTTDCLLITLQNVLEGLVVYPKVIQRHIDQELPFMATENIIMAMVKAGGDRQVCHEKIRG 70 (124)
Q Consensus 2 Ew~~lPe~~~~~~~aL~~~~~ll~gL~V~~~rM~~Nl~~t~glI~SE~vm~aLa~~~lgR~~Ah~~V~~ 70 (124)
||..+|+++.++..++..+..++++|+||++||++|++.++|+++||.+++.|+++|+||.+||++|.+
T Consensus 306 ~~~~l~~~~~~~~~~l~~~~~~l~~l~v~~~rm~~~l~~~~~~~~ae~la~~L~~~g~~~r~Ah~~V~~ 374 (387)
T cd01360 306 ERVILPDATILLDYILRRMTRVLENLVVYPENMRRNLNLTKGLIFSQRVLLALVEKGMSREEAYEIVQR 374 (387)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHccCEECHHHHHHHHHhccCHHHHHHHHHHHHHcCCCHHHHHHHHHH
Confidence 688999999999999999999999999999999999999999999999999999989999999999998
This subgroup contains bacterial and archeal proteins similar to ASL, a member of the Lyase class I family. Members of this family for the most part catalyze similar beta-elimination reactions in which a C-N or C-O bond is cleaved with the release of fumarate as one of the products. These proteins are active as tetramers. The four active sites of the homotetrameric enzyme are each formed by residues from three different subunits. ASL catalyzes two steps in the de novo purine biosynthesis: the conversion of 5-aminoimidazole-(N-succinylocarboxamide) ribotide (SAICAR) into 5-aminoimidazole-4-carboxamide ribotide (AICAR) and, the conversion of adenylsuccinate (SAMP) into adenosine monophosphate (AMP).
>KOG2700|consensus
Back Show alignment and domain information
Probab=99.38 E-value=7.4e-13 Score=111.95 Aligned_cols=107 Identities=45% Similarity=0.540 Sum_probs=87.8
Q ss_pred CccchHhHHHHHHHHHHHHHHhhhhCCeeCHHHHHHHHHhhCCchHHHHHHHHHHHcCCCHHHHHHHHHHhcCcc----c
Q psy14321 1 MKRLTLSESFLTTDCLLITLQNVLEGLVVYPKVIQRHIDQELPFMATENIIMAMVKAGGDRQVCHEKIRGALNPL----F 76 (124)
Q Consensus 1 ~Ew~~lPe~~~~~~~aL~~~~~ll~gL~V~~~rM~~Nl~~t~glI~SE~vm~aLa~~~lgR~~Ah~~V~~~a~~A----~ 76 (124)
++|..+|+.|..+++.|.+..++++||.|+|++|.+|+..+.|++.+|+++|+|+++|++|++||+.|+.++.++ .
T Consensus 333 ~~rivlP~~Fl~ad~~L~~~~ni~~gl~v~p~~i~r~i~~e~~~~~~eni~mAL~~~g~srq~ahe~I~~L~~~a~~~v~ 412 (481)
T KOG2700|consen 333 NRRIVLPDAFLTADGNLGTLLNILEGLVVYPKVIERNIRDELPFMVLENIIMALVKAGLSRQEAHEGIRKLSHQAAQVVK 412 (481)
T ss_pred ccceechHHHHHHHHHHHHHHHHHhhcccccHHHHHHHHhhhhHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHH
Confidence 479999999999999999999999999999999999999999999999999999999999999999999999988 6
Q ss_pred cCCccch----hhhhhhHHHHHHHHHhhhcCCccC
Q psy14321 77 PHRRLTL----SESFLTTDCLLITLQNVLKGLVVY 107 (124)
Q Consensus 77 ~~~~~~l----~ea~l~~~~~l~~~~~v~~~l~v~ 107 (124)
++++.+- .+......++-.-....++.+.+.
T Consensus 413 ~e~g~~~~ie~~k~~~~~~~v~ee~~~ll~p~~f~ 447 (481)
T KOG2700|consen 413 QEGGDNDLIERAKEDPTFKPVKEELDSLLDPLNFT 447 (481)
T ss_pred HhcCCcHHHHHhcccccccchHHHHHhhccchhcc
Confidence 6655311 012233445555566666644443
>PRK06705 argininosuccinate lyase; Provisional
Back Show alignment and domain information
Probab=99.36 E-value=2.5e-12 Score=110.52 Aligned_cols=84 Identities=11% Similarity=0.082 Sum_probs=77.8
Q ss_pred CccchHhHHHHHHHHH---HHHHHhhhhCCeeCHHHHHHHHHhhCCchHHHHHHHHHHHc-CCCHHHHHHHHHHhcCccc
Q psy14321 1 MKRLTLSESFLTTDCL---LITLQNVLEGLVVYPKVIQRHIDQELPFMATENIIMAMVKA-GGDRQVCHEKIRGALNPLF 76 (124)
Q Consensus 1 ~Ew~~lPe~~~~~~~a---L~~~~~ll~gL~V~~~rM~~Nl~~t~glI~SE~vm~aLa~~-~lgR~~Ah~~V~~~a~~A~ 76 (124)
.||..+|++|.+++.+ +..+..++++|+||++||++|+.. |+++|+.++..|+++ |+||.+||++|.++++.+.
T Consensus 328 ~q~~~~~~~~~~~~~~~~~l~~~~~~l~~l~v~~~rm~~~~~~--g~~~At~la~~Lv~~~Gl~fr~Ah~iV~~~v~~a~ 405 (502)
T PRK06705 328 TEDDLQPYLYKGIEKAIRVFCIMNAVIRTMKVEEDTLKRRSYK--HAITITDFADVLTKNYGIPFRHAHHAASVIANMSL 405 (502)
T ss_pred hHhhhhhHHHHHHHHHHHHHHHHHHHHCcCEECHHHHHHHHhc--CchHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHH
Confidence 3788899999999999 999999999999999999999988 999999999999998 8999999999999999999
Q ss_pred cCCccchhhhh
Q psy14321 77 PHRRLTLSESF 87 (124)
Q Consensus 77 ~~~~~~l~ea~ 87 (124)
+.++ ++.+.+
T Consensus 406 ~~~~-~l~~~~ 415 (502)
T PRK06705 406 EQKK-ELHELC 415 (502)
T ss_pred HhCC-CHHHhh
Confidence 8887 555653
>cd01595 Adenylsuccinate_lyase_like Adenylsuccinate lyase (ASL)_like
Back Show alignment and domain information
Probab=99.35 E-value=2.9e-12 Score=106.30 Aligned_cols=70 Identities=36% Similarity=0.562 Sum_probs=67.9
Q ss_pred CccchHhHHHHHHHHHHHHHHhhhhCCeeCHHHHHHHHHhhCCchHHHHHHHHHHHcCCCHHHHHHHHHH
Q psy14321 1 MKRLTLSESFLTTDCLLITLQNVLEGLVVYPKVIQRHIDQELPFMATENIIMAMVKAGGDRQVCHEKIRG 70 (124)
Q Consensus 1 ~Ew~~lPe~~~~~~~aL~~~~~ll~gL~V~~~rM~~Nl~~t~glI~SE~vm~aLa~~~lgR~~Ah~~V~~ 70 (124)
.||..+|+++.++.+++..+..+++||+||++||++|++.+.|+++||.+++.|+++|+||.+||++|++
T Consensus 306 ~~~~~l~~~~~~~~~~l~~~~~~l~~l~v~~~~m~~~l~~~~g~~~ae~~~~~L~~~g~g~~~Ah~~v~~ 375 (381)
T cd01595 306 VERNILPDAFLLLDAALSRLQGLLEGLVVNPERMRRNLDLTWGLILSEAVMMALAKKGLGRQEAYELVKE 375 (381)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHcCCEECHHHHHHHHHhccCHHHHHHHHHHHHHhCCCHhHHHHHHHH
Confidence 3789999999999999999999999999999999999999999999999999999988999999999998
This group contains ASL, prokaryotic-type 3-carboxy-cis,cis-muconate cycloisomerase (pCMLE), and related proteins. These proteins are members of the Lyase class I family. Members of this family for the most part catalyze similar beta-elimination reactions in which a C-N or C-O bond is cleaved with the release of fumarate as one of the products. These proteins are active as tetramers. The four active sites of the homotetrameric enzyme are each formed by residues from three different subunits. ASL catalyzes two steps in the de novo purine biosynthesis: the conversion of 5-aminoimidazole-(N-succinylocarboxamide) ribotide (SAICAR) into 5-aminoimidazole-4-carboxamide ribotide (AICAR) and; the conversion of adenylsuccinate (SAMP) into adenosine monophosphate (AMP). pCMLE catalyzes the cyclization of 3-carboxy-cis,cis-muconate (3CM) to 4-carboxy-muconolactone, in the beta-ketoadipate pathway. ASL deficiency has been linked t
>cd01359 Argininosuccinate_lyase Argininosuccinate lyase (argininosuccinase, ASAL)
Back Show alignment and domain information
Probab=99.34 E-value=3.4e-12 Score=107.38 Aligned_cols=84 Identities=19% Similarity=0.198 Sum_probs=77.8
Q ss_pred ccchHhHHHHHHHHHHHHHHhhhhCCeeCHHHHHHHHHhhCCchHHHHHHHHHHH-cCCCHHHHHHHHHHhcCccccCCc
Q psy14321 2 KRLTLSESFLTTDCLLITLQNVLEGLVVYPKVIQRHIDQELPFMATENIIMAMVK-AGGDRQVCHEKIRGALNPLFPHRR 80 (124)
Q Consensus 2 Ew~~lPe~~~~~~~aL~~~~~ll~gL~V~~~rM~~Nl~~t~glI~SE~vm~aLa~-~~lgR~~Ah~~V~~~a~~A~~~~~ 80 (124)
+|..+|+++.++..++..+..++++|+||++||++|++ +|+++++.+++.|++ +|+||.+||++|++++.++.++|+
T Consensus 302 ~~~~l~~~~~~~~~al~~~~~~l~~l~v~~~~m~~~l~--~~~~~a~~l~~~l~~~~g~~~r~Ah~~v~~~~~~a~~~g~ 379 (435)
T cd01359 302 DKEPLFDAVDTLIASLRLLTGVISTLTVNPERMREAAE--AGFSTATDLADYLVREKGVPFREAHHIVGRAVRLAEEKGK 379 (435)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHhhCEECHHHHHHHHh--cCccHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHcCC
Confidence 68899999999999999999999999999999999997 999999999999998 799999999999999999998887
Q ss_pred cchhhhhh
Q psy14321 81 LTLSESFL 88 (124)
Q Consensus 81 ~~l~ea~l 88 (124)
++.|.+.
T Consensus 380 -~~~~~~~ 386 (435)
T cd01359 380 -DLSDLTL 386 (435)
T ss_pred -ChhhcCH
Confidence 4556533
This group contains ASAL and related proteins. It is a member of the Lyase class I family. Members of this family for the most part catalyze similar beta-elimination reactions in which a C-N or C-O bond is cleaved with the release of fumarate as one of the products. These proteins are active as tetramers. The four active sites of the homotetrameric enzyme are each formed by residues from three different subunits. ASAL is a cytosolic enzyme which catalyzes the reversible breakdown of argininosuccinate to arginine and fumarate during arginine biosynthesis. In ureotelic species ASAL also catalyzes a reaction involved in the production of urea. Included in this group are the major soluble avian eye lens proteins from duck, delta 1 and delta 2 crystallin. Of these two isoforms only delta 2 has retained ASAL activity. These crystallins may have evolved by, gene recruitment of ASAL followed by gene duplication.
>cd01597 pCLME prokaryotic 3-carboxy-cis,cis-muconate cycloisomerase (CMLE)_like
Back Show alignment and domain information
Probab=99.33 E-value=6.1e-12 Score=105.98 Aligned_cols=87 Identities=24% Similarity=0.299 Sum_probs=80.2
Q ss_pred ccchHhHHHHHHHHHHHHHHhhhhCCeeCHHHHHHHHHhhCCchHHHHHHHHHHHcCCCHHHHHHHHHHhcCccccCCcc
Q psy14321 2 KRLTLSESFLTTDCLLITLQNVLEGLVVYPKVIQRHIDQELPFMATENIIMAMVKAGGDRQVCHEKIRGALNPLFPHRRL 81 (124)
Q Consensus 2 Ew~~lPe~~~~~~~aL~~~~~ll~gL~V~~~rM~~Nl~~t~glI~SE~vm~aLa~~~lgR~~Ah~~V~~~a~~A~~~~~~ 81 (124)
+|..+|+++..+.+++..+..+++||+||++||++|++.+.|+++||.+++.|++ ++|+.+||++|++++..+.++|.
T Consensus 316 ~~~~l~~~~~~~~~~l~~~~~~l~~l~v~~~rm~~~~~~~~~~~~ae~l~~~l~~-~i~~~~Ah~~v~~~~~~a~~~g~- 393 (437)
T cd01597 316 EWIALPEIFLLASGALEQAEFLLSGLEVNEDRMRANLDLTGGLILSEAVMMALAP-KLGRQEAHDLVYEACMRAVEEGR- 393 (437)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHcCCEECHHHHHHHHHhccChHHHHHHHHHHHH-hcCHHHHHHHHHHHHHHHHHhCC-
Confidence 5888999999999999999999999999999999999999999999999999998 79999999999999999998886
Q ss_pred chhhhhhhH
Q psy14321 82 TLSESFLTT 90 (124)
Q Consensus 82 ~l~ea~l~~ 90 (124)
++.+.+...
T Consensus 394 ~~~~~~~~~ 402 (437)
T cd01597 394 PLREVLLED 402 (437)
T ss_pred CHHHHHHhC
Confidence 566765444
This subgroup contains pCLME and related proteins, and belongs to the Lyase class I family. Members of this family for the most part catalyze similar beta-elimination reactions in which a C-N or C-O bond is cleaved with the release of fumarate as one of the products. These proteins are active as tetramers. The four active sites of the homotetrameric enzyme are each formed by residues from three different subunits. CMLE catalyzes the cyclization of 3-carboxy-cis,cis-muconate (3CM) to 4-carboxy-muconolactone in the beta-ketoadipate pathway. This pathway is responsible for the catabolism of a variety of aromatic compounds into intermediates of the citric cycle in prokaryotic and eukaryotic micro-organisms.
>PLN02646 argininosuccinate lyase
Back Show alignment and domain information
Probab=99.31 E-value=7.6e-12 Score=106.89 Aligned_cols=82 Identities=15% Similarity=0.163 Sum_probs=77.5
Q ss_pred ccchHhHHHHHHHHHHHHHHhhhhCCeeCHHHHHHHHHhhCCchHHHHHHHHHHHcCCCHHHHHHHHHHhcCccccCCcc
Q psy14321 2 KRLTLSESFLTTDCLLITLQNVLEGLVVYPKVIQRHIDQELPFMATENIIMAMVKAGGDRQVCHEKIRGALNPLFPHRRL 81 (124)
Q Consensus 2 Ew~~lPe~~~~~~~aL~~~~~ll~gL~V~~~rM~~Nl~~t~glI~SE~vm~aLa~~~lgR~~Ah~~V~~~a~~A~~~~~~ 81 (124)
||..+|+++.++..++..+..++++|+||++||++|++ +|+++|+.++..|+++|+||.+||++|.+++..+.++|.
T Consensus 338 ~~~~l~~~~~~~~~~l~~~~~~l~~l~v~~~rm~~~l~--~~~~~At~la~~Lv~~Gi~fr~Ah~iV~~~v~~a~~~g~- 414 (474)
T PLN02646 338 DKEPLFDSVDTVSDMLEVATEFAQNITFNPERIKKSLP--AGMLDATTLADYLVRKGVPFRETHHIVGAAVALAESKGC- 414 (474)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHccCEECHHHHHHHHH--cCccHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHhCC-
Confidence 68899999999999999999999999999999999999 899999999999999899999999999999999998886
Q ss_pred chhhh
Q psy14321 82 TLSES 86 (124)
Q Consensus 82 ~l~ea 86 (124)
++.|.
T Consensus 415 ~l~~l 419 (474)
T PLN02646 415 ELSDL 419 (474)
T ss_pred CHHHH
Confidence 56565
>PRK12308 bifunctional argininosuccinate lyase/N-acetylglutamate synthase; Provisional
Back Show alignment and domain information
Probab=99.25 E-value=2.5e-11 Score=106.13 Aligned_cols=84 Identities=13% Similarity=0.062 Sum_probs=77.3
Q ss_pred cchHhHHHHHHHHHHHHHHhhhhCCeeCHHHHHHHHHhhCCchHHHHHHHHHHHcCCCHHHHHHHHHHhcCccccCCccc
Q psy14321 3 RLTLSESFLTTDCLLITLQNVLEGLVVYPKVIQRHIDQELPFMATENIIMAMVKAGGDRQVCHEKIRGALNPLFPHRRLT 82 (124)
Q Consensus 3 w~~lPe~~~~~~~aL~~~~~ll~gL~V~~~rM~~Nl~~t~glI~SE~vm~aLa~~~lgR~~Ah~~V~~~a~~A~~~~~~~ 82 (124)
|..+|+++.++..++..+..+++||+||++||++| .++|+++|+.++..|+++|+|+.+||++|.++++.+.++|+ +
T Consensus 325 ~~~l~~~~~~~~~~l~~~~~~l~~l~v~~~rm~~~--~~~g~~~a~~la~~L~~~g~~~r~Ah~~v~~~v~~a~~~g~-~ 401 (614)
T PRK12308 325 KEGLFDALDTWNDCMEMAALCFDGIKVNGERTLEA--AKQGYANATELADYLVAKGIPFREAHHIVGVAVVGAIAKGC-A 401 (614)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhCcCEECHHHHHHH--HHcCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHcCC-C
Confidence 77899999999999999999999999999999999 77899999999999999899999999999999999998887 4
Q ss_pred hhhhhhh
Q psy14321 83 LSESFLT 89 (124)
Q Consensus 83 l~ea~l~ 89 (124)
+.+....
T Consensus 402 l~~~~~~ 408 (614)
T PRK12308 402 LEELSLE 408 (614)
T ss_pred hhhCCHH
Confidence 6565443
>TIGR00838 argH argininosuccinate lyase
Back Show alignment and domain information
Probab=99.20 E-value=6.6e-11 Score=100.35 Aligned_cols=86 Identities=14% Similarity=0.172 Sum_probs=78.5
Q ss_pred ccchHhHHHHHHHHHHHHHHhhhhCCeeCHHHHHHHHHhhCCchHHHHHHHHHHHcCCCHHHHHHHHHHhcCccccCCcc
Q psy14321 2 KRLTLSESFLTTDCLLITLQNVLEGLVVYPKVIQRHIDQELPFMATENIIMAMVKAGGDRQVCHEKIRGALNPLFPHRRL 81 (124)
Q Consensus 2 Ew~~lPe~~~~~~~aL~~~~~ll~gL~V~~~rM~~Nl~~t~glI~SE~vm~aLa~~~lgR~~Ah~~V~~~a~~A~~~~~~ 81 (124)
+|..+|+++.++..++..+..+++||+||++||++| .+.|+++++.++..|+++|+|+.+||+.|.+++..+.++|.
T Consensus 322 ~~~~l~~~~~~~~~al~~~~~~i~~l~v~~~rm~~~--~~~~~~~at~la~~Lv~~g~~~r~Ah~~v~~~~~~a~~~g~- 398 (455)
T TIGR00838 322 DKEPLFDALKTVELSLEMATGMLDTITVNKERMEEA--ASAGFSNATELADYLVRKGVPFREAHHIVGELVATAIERGK- 398 (455)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHccCEECHHHHHHH--HHcCccHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHcCC-
Confidence 478899999999999999999999999999999999 66899999999999999899999999999999999998886
Q ss_pred chhhhhhhH
Q psy14321 82 TLSESFLTT 90 (124)
Q Consensus 82 ~l~ea~l~~ 90 (124)
++.|.+...
T Consensus 399 ~l~~~~~~~ 407 (455)
T TIGR00838 399 GLEELTLEE 407 (455)
T ss_pred CHHHHHHHH
Confidence 566764443
This model describes argininosuccinate lyase, but may include examples of avian delta crystallins, in which argininosuccinate lyase activity may or may not be present and the biological role is to provide the optically clear cellular protein of the eye lens.
>PRK00855 argininosuccinate lyase; Provisional
Back Show alignment and domain information
Probab=99.15 E-value=1.5e-10 Score=98.37 Aligned_cols=82 Identities=17% Similarity=0.166 Sum_probs=76.5
Q ss_pred ccchHhHHHHHHHHHHHHHHhhhhCCeeCHHHHHHHHHhhCCchHHHHHHHHHHHcCCCHHHHHHHHHHhcCccccCCcc
Q psy14321 2 KRLTLSESFLTTDCLLITLQNVLEGLVVYPKVIQRHIDQELPFMATENIIMAMVKAGGDRQVCHEKIRGALNPLFPHRRL 81 (124)
Q Consensus 2 Ew~~lPe~~~~~~~aL~~~~~ll~gL~V~~~rM~~Nl~~t~glI~SE~vm~aLa~~~lgR~~Ah~~V~~~a~~A~~~~~~ 81 (124)
+|..+|+++.++..++..+..+++||+||++||++|++ +|++.++.++..|+++|+|+.+||+.|.+++.++.++|.
T Consensus 326 ~~~~l~~~~~~~~~al~~~~~~l~~l~v~~~~m~~~l~--~~~~~at~la~~Lv~~gi~~r~Ah~~v~~~~~~a~~~g~- 402 (459)
T PRK00855 326 DKEPLFDAVDTLKLSLEAMAGMLETLTVNKERMREAAG--KGFSTATDLADYLVRKGVPFREAHEIVGKAVREAEERGV- 402 (459)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHccCEECHHHHHHHHH--cchhHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHhCC-
Confidence 46779999999999999999999999999999999998 899999999999999899999999999999999999887
Q ss_pred chhhh
Q psy14321 82 TLSES 86 (124)
Q Consensus 82 ~l~ea 86 (124)
++.+.
T Consensus 403 ~~~~~ 407 (459)
T PRK00855 403 DLADL 407 (459)
T ss_pred CHHHH
Confidence 45564
>PRK04833 argininosuccinate lyase; Provisional
Back Show alignment and domain information
Probab=99.08 E-value=4.4e-10 Score=95.56 Aligned_cols=79 Identities=16% Similarity=0.109 Sum_probs=73.1
Q ss_pred hHhHHHHHHHHHHHHHHhhhhCCeeCHHHHHHHHHhhCCchHHHHHHHHHHHcCCCHHHHHHHHHHhcCccccCCccchh
Q psy14321 5 TLSESFLTTDCLLITLQNVLEGLVVYPKVIQRHIDQELPFMATENIIMAMVKAGGDRQVCHEKIRGALNPLFPHRRLTLS 84 (124)
Q Consensus 5 ~lPe~~~~~~~aL~~~~~ll~gL~V~~~rM~~Nl~~t~glI~SE~vm~aLa~~~lgR~~Ah~~V~~~a~~A~~~~~~~l~ 84 (124)
.+|+++..+..++..+..++++|+||++||++| .++|++.|+.++..|+++|+|+.+||++|.+++..+.+++. ++.
T Consensus 327 ~l~~~~~~~~~~l~~~~~~l~~l~v~~~rm~~~--~~~g~~~a~~~a~~L~~~g~~~r~Ah~~v~~~~~~a~~~~~-~~~ 403 (455)
T PRK04833 327 GLFDALDTWLDCLHMAALVLDGIQVKRPRCQEA--AQQGYANATELADYLVAKGVPFREAHHIVGEAVVEAIRQGK-PLE 403 (455)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhCeECHHHHHHH--HHccHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHcCC-Chh
Confidence 589999999999999999999999999999999 77899999999999999899999999999999999998886 454
Q ss_pred hh
Q psy14321 85 ES 86 (124)
Q Consensus 85 ea 86 (124)
+.
T Consensus 404 ~~ 405 (455)
T PRK04833 404 DL 405 (455)
T ss_pred hc
Confidence 53
>PRK02186 argininosuccinate lyase; Provisional
Back Show alignment and domain information
Probab=99.06 E-value=4.8e-10 Score=101.55 Aligned_cols=82 Identities=10% Similarity=0.155 Sum_probs=75.6
Q ss_pred ccchHhHHHHHHHHHHHHHHhhhhCCeeCHHHHHHHHHhhCCchHHHHHHHHHHHc-CCCHHHHHHHHHHhcCccccCCc
Q psy14321 2 KRLTLSESFLTTDCLLITLQNVLEGLVVYPKVIQRHIDQELPFMATENIIMAMVKA-GGDRQVCHEKIRGALNPLFPHRR 80 (124)
Q Consensus 2 Ew~~lPe~~~~~~~aL~~~~~ll~gL~V~~~rM~~Nl~~t~glI~SE~vm~aLa~~-~lgR~~Ah~~V~~~a~~A~~~~~ 80 (124)
+|..+|+++.++..++..+..++++|+||++||++|++.+.+ +|+.++..|+++ |+||.+||++|.+++..+.+++.
T Consensus 732 ~~~~l~~~~~~~~~~l~~~~~~l~~l~v~~~rm~~~~~~~~~--~at~la~~L~~~~g~~fr~Ah~~v~~~v~~~~~~~~ 809 (887)
T PRK02186 732 MNGPIAQACAAIEDAAAVLVLLIDGLEADQARMRAHLEDGGV--SATAVAESLVVRRSISFRSAHTQVGQAIRQSLDQGR 809 (887)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHhhCEECHHHHHHHHhcCcc--hHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHhcCC
Confidence 588999999999999999999999999999999999999888 899999999985 99999999999999999988874
Q ss_pred cchhhh
Q psy14321 81 LTLSES 86 (124)
Q Consensus 81 ~~l~ea 86 (124)
++.+.
T Consensus 810 -~~~~~ 814 (887)
T PRK02186 810 -SSADA 814 (887)
T ss_pred -cccch
Confidence 45454
>TIGR00979 fumC_II fumarate hydratase, class II
Back Show alignment and domain information
Probab=98.92 E-value=1.8e-09 Score=92.12 Aligned_cols=75 Identities=16% Similarity=0.100 Sum_probs=64.8
Q ss_pred cchHhHHHHHHHHHHHHHHhhhhCCeeCHHHHHHHHHhhCCchHHHHHHHHHHHcCCCHHHHHHHHHHhcCccccCCccc
Q psy14321 3 RLTLSESFLTTDCLLITLQNVLEGLVVYPKVIQRHIDQELPFMATENIIMAMVKAGGDRQVCHEKIRGALNPLFPHRRLT 82 (124)
Q Consensus 3 w~~lPe~~~~~~~aL~~~~~ll~gL~V~~~rM~~Nl~~t~glI~SE~vm~aLa~~~lgR~~Ah~~V~~~a~~A~~~~~~~ 82 (124)
|..+|+++.++++++..+..+++||+||++||++|++.+.| ++.+|++ ++||++||++++ ++.+++. +
T Consensus 364 ~~~l~~~~~~~~~~~~~~~~~l~~L~v~~erm~~nl~~~~~------~~t~La~-~lg~~~A~~~~~----~a~~~~~-~ 431 (458)
T TIGR00979 364 YNFLQSVRLLSDAMESFRDHCVVGIEPNKERIQQLLNNSLM------LVTALNP-HIGYDNAAKIAK----KAHKEGI-T 431 (458)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHccCEECHHHHHHHHHcCcc------HHHHhhh-ccCHHHHHHHHH----HHHHhCC-C
Confidence 88999999999999999999999999999999999999999 8899999 799999999544 5555665 5
Q ss_pred hhhhhhh
Q psy14321 83 LSESFLT 89 (124)
Q Consensus 83 l~ea~l~ 89 (124)
+.|++..
T Consensus 432 ~~e~~~~ 438 (458)
T TIGR00979 432 LKEAALE 438 (458)
T ss_pred HHHHHHH
Confidence 6566443
Putative fumarases from several species (Mycobacterium tuberculosis, Streptomyces coelicolor, Pseudomonas aeruginosa) branch deeply, although within the same branch of a phylogenetic tree rooted by aspartate ammonia-lyase sequences, and score between the trusted and noise cutoffs.
>PLN00134 fumarate hydratase; Provisional
Back Show alignment and domain information
Probab=98.91 E-value=1.8e-09 Score=92.10 Aligned_cols=75 Identities=16% Similarity=0.093 Sum_probs=65.9
Q ss_pred cchHhHHHHHHHHHHHHHHhhhhCCeeCHHHHHHHHHhhCCchHHHHHHHHHHHcCCCHHHHHHHHHHhcCccccCCccc
Q psy14321 3 RLTLSESFLTTDCLLITLQNVLEGLVVYPKVIQRHIDQELPFMATENIIMAMVKAGGDRQVCHEKIRGALNPLFPHRRLT 82 (124)
Q Consensus 3 w~~lPe~~~~~~~aL~~~~~ll~gL~V~~~rM~~Nl~~t~glI~SE~vm~aLa~~~lgR~~Ah~~V~~~a~~A~~~~~~~ 82 (124)
|..+|+++.++++++..+..+++||+||++||++|++.+.|++ ++|++ ++||++||+ ++++++++++ +
T Consensus 359 ~~~l~~~~~~~~~~~~~~~~~l~~l~vn~erm~~~l~~~~~l~------~~La~-~ig~~~A~~----~~~~a~~~g~-~ 426 (458)
T PLN00134 359 YNLLHSIRLLGDASASFRKNCVRGIEANRERISKLLHESLMLV------TALNP-KIGYDKAAA----VAKKAHKEGT-T 426 (458)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHccCEECHHHHHHHHHhccchH------HHhhh-ccCHHHHHH----HHHHHHHhCC-C
Confidence 7889999999999999999999999999999999999999998 89999 699999998 4555666676 5
Q ss_pred hhhhhhh
Q psy14321 83 LSESFLT 89 (124)
Q Consensus 83 l~ea~l~ 89 (124)
+.|+++.
T Consensus 427 l~e~~~~ 433 (458)
T PLN00134 427 LKEAALK 433 (458)
T ss_pred HHHHHHh
Confidence 6676554
>PRK00485 fumC fumarate hydratase; Reviewed
Back Show alignment and domain information
Probab=98.75 E-value=1.3e-08 Score=86.86 Aligned_cols=74 Identities=14% Similarity=0.079 Sum_probs=64.2
Q ss_pred ccchHhHHHHHHHHHHHHHHhhhhCCeeCHHHHHHHHHhhCCchHHHHHHHHHHHcCCCHHHHHHHHHHhcCccccCCcc
Q psy14321 2 KRLTLSESFLTTDCLLITLQNVLEGLVVYPKVIQRHIDQELPFMATENIIMAMVKAGGDRQVCHEKIRGALNPLFPHRRL 81 (124)
Q Consensus 2 Ew~~lPe~~~~~~~aL~~~~~ll~gL~V~~~rM~~Nl~~t~glI~SE~vm~aLa~~~lgR~~Ah~~V~~~a~~A~~~~~~ 81 (124)
+|..+|+++.+.++++..+..+++||+||++||++|++.+.| ++..|++ ++||++||++++ ++.++|.
T Consensus 366 ~~~~~~~~~~l~~~~~~~~~~~l~~l~v~~erm~~~l~~~~~------~~t~La~-~lg~~~A~~~~~----~a~~~g~- 433 (464)
T PRK00485 366 AYNFLQSIRLLADAMRSFADHCVVGIEPNRERIKELLERSLM------LVTALNP-HIGYDKAAKIAK----KAHKEGL- 433 (464)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHccCEECHHHHHHHHHhCCe------eHHHhcc-ccCHHHHHHHHH----HHHHcCC-
Confidence 688999999999999999999999999999999999999998 7899998 799999999444 5566665
Q ss_pred chhhhh
Q psy14321 82 TLSESF 87 (124)
Q Consensus 82 ~l~ea~ 87 (124)
++.|.+
T Consensus 434 ~l~~~~ 439 (464)
T PRK00485 434 TLKEAA 439 (464)
T ss_pred CHHHHH
Confidence 455653
>cd01362 Fumarase_classII Class II fumarases
Back Show alignment and domain information
Probab=98.72 E-value=2.2e-08 Score=85.30 Aligned_cols=74 Identities=15% Similarity=0.079 Sum_probs=64.5
Q ss_pred cchHhHHHHHHHHHHHHHHhhhhCCeeCHHHHHHHHHhhCCchHHHHHHHHHHHcCCCHHHHHHHHHHhcCccccCCccc
Q psy14321 3 RLTLSESFLTTDCLLITLQNVLEGLVVYPKVIQRHIDQELPFMATENIIMAMVKAGGDRQVCHEKIRGALNPLFPHRRLT 82 (124)
Q Consensus 3 w~~lPe~~~~~~~aL~~~~~ll~gL~V~~~rM~~Nl~~t~glI~SE~vm~aLa~~~lgR~~Ah~~V~~~a~~A~~~~~~~ 82 (124)
|..+|+++.+.++++..+..+++||+||++||++|++.+.|+ ++.|++ ++||++||++++ .+.+++. +
T Consensus 363 ~~~l~~~~~~~~~~~~~~~~~l~~L~v~~~rm~~~l~~~~~~------~~~La~-~ig~~~A~~l~~----~a~~~~~-~ 430 (455)
T cd01362 363 YNLLQSIRLLADACRSFADKCVAGIEPNRERIAELLERSLML------VTALNP-HIGYDKAAKIAK----KAHKEGL-T 430 (455)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHccCEECHHHHHHHHHhcchh------HHHhcc-ccCHHHHHHHHH----HHHHcCC-C
Confidence 889999999999999999999999999999999999999998 799998 799999999854 4455565 5
Q ss_pred hhhhhh
Q psy14321 83 LSESFL 88 (124)
Q Consensus 83 l~ea~l 88 (124)
+.|++.
T Consensus 431 l~~~~~ 436 (455)
T cd01362 431 LKEAAL 436 (455)
T ss_pred HHHHHH
Confidence 666543
This subgroup contains Escherichia coli fumarase C, human mitochondrial fumarase, and related proteins. It is a member of the Lyase class I family. Members of this family for the most part catalyze similar beta-elimination reactions in which a C-N or C-O bond is cleaved with the release of fumarate as one of the products. These proteins are active as tetramers. The four active sites of the homotetrameric enzyme are each formed by residues from three different subunits. Fumarase catalyzes the reversible hydration/dehydration of fumarate to L-malate during the Krebs cycle.
>PRK12273 aspA aspartate ammonia-lyase; Provisional
Back Show alignment and domain information
Probab=98.60 E-value=1.1e-07 Score=81.43 Aligned_cols=77 Identities=10% Similarity=0.113 Sum_probs=64.2
Q ss_pred CccchHhHH---HHHHHHHHHHHH-hhhhCCeeCHHHHHHHHHhhCCchHHHHHHHHHHHcCCCHHHHHHHHHHhcCccc
Q psy14321 1 MKRLTLSES---FLTTDCLLITLQ-NVLEGLVVYPKVIQRHIDQELPFMATENIIMAMVKAGGDRQVCHEKIRGALNPLF 76 (124)
Q Consensus 1 ~Ew~~lPe~---~~~~~~aL~~~~-~ll~gL~V~~~rM~~Nl~~t~glI~SE~vm~aLa~~~lgR~~Ah~~V~~~a~~A~ 76 (124)
.||..+|++ +..+..++..+. .+++||+||++||++|++.+.|++ ..|++ .+||+.||+++++ |.
T Consensus 363 ~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~l~v~~erm~~~l~~~~~~~------t~LA~-~L~~~~a~~lv~~----a~ 431 (472)
T PRK12273 363 MEPVIAYNLFESISILTNACRTLREKCIDGITANEERCREYVENSIGIV------TALNP-YIGYENAAEIAKE----AL 431 (472)
T ss_pred hhhhhHHHHHHHHHHHHHHHHHHHHHHHccCEECHHHHHHHHHhCCchH------HHHHH-HHHHHHHHHHHHH----HH
Confidence 378889999 999999999999 599999999999999999999987 78998 4999988888664 45
Q ss_pred cCCccchhhhhhh
Q psy14321 77 PHRRLTLSESFLT 89 (124)
Q Consensus 77 ~~~~~~l~ea~l~ 89 (124)
+++. ++.|.+..
T Consensus 432 ~~g~-~l~~~~~~ 443 (472)
T PRK12273 432 ETGK-SVRELVLE 443 (472)
T ss_pred HhCC-CHHHHHhh
Confidence 5565 56565433
>cd01357 Aspartase Aspartase
Back Show alignment and domain information
Probab=98.58 E-value=6.9e-08 Score=82.17 Aligned_cols=77 Identities=10% Similarity=0.141 Sum_probs=64.6
Q ss_pred CccchHhHHHH---HHHHHHHHH-HhhhhCCeeCHHHHHHHHHhhCCchHHHHHHHHHHHcCCCHHHHHHHHHHhcCccc
Q psy14321 1 MKRLTLSESFL---TTDCLLITL-QNVLEGLVVYPKVIQRHIDQELPFMATENIIMAMVKAGGDRQVCHEKIRGALNPLF 76 (124)
Q Consensus 1 ~Ew~~lPe~~~---~~~~aL~~~-~~ll~gL~V~~~rM~~Nl~~t~glI~SE~vm~aLa~~~lgR~~Ah~~V~~~a~~A~ 76 (124)
.||..+|+++. ++.+++..+ ..+++||+||++||++|++.+.|++ ..|++. +||+.||+++++ +.
T Consensus 356 ~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~l~v~~erm~~~l~~~~~~~------t~La~~-lg~~~a~~~~~~----a~ 424 (450)
T cd01357 356 FEPVIAYNLLESIDILTNAVRTLRERCIDGITANEERCREYVENSIGIV------TALNPY-IGYEAAAEIAKE----AL 424 (450)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHccCEECHHHHHHHHHhCcchH------HHHHHH-HHHHHHHHHHHH----HH
Confidence 37889999999 999999999 5999999999999999999999987 889984 999998886664 55
Q ss_pred cCCccchhhhhhh
Q psy14321 77 PHRRLTLSESFLT 89 (124)
Q Consensus 77 ~~~~~~l~ea~l~ 89 (124)
+++. ++.|.+..
T Consensus 425 ~~g~-~l~e~~~~ 436 (450)
T cd01357 425 ETGR-SVRELVLE 436 (450)
T ss_pred HhCC-CHHHHHHh
Confidence 6665 56666443
This subgroup contains Escherichia coli aspartase (L-aspartate ammonia-lyase), Bacillus aspartase and related proteins. It is a member of the Lyase class I family, which includes both aspartase (L-aspartate ammonia-lyase) and fumarase class II enzymes. Members of this family for the most part catalyze similar beta-elimination reactions in which a C-N or C-O bond is cleaved with the release of fumarate as one of the products. These proteins are active as tetramers. The four active sites of the homotetrameric enzyme are each formed by residues from three different subunits. Aspartase catalyzes the reversible deamination of aspartic acid.
>TIGR00839 aspA aspartate ammonia-lyase
Back Show alignment and domain information
Probab=98.57 E-value=1.6e-07 Score=80.49 Aligned_cols=76 Identities=7% Similarity=0.009 Sum_probs=62.6
Q ss_pred CccchHhHH----HHHHHHHHHHHHhhhhCCeeCHHHHHHHHHhhCCchHHHHHHHHHHHcCCCHHHHHHHHHHhcCccc
Q psy14321 1 MKRLTLSES----FLTTDCLLITLQNVLEGLVVYPKVIQRHIDQELPFMATENIIMAMVKAGGDRQVCHEKIRGALNPLF 76 (124)
Q Consensus 1 ~Ew~~lPe~----~~~~~~aL~~~~~ll~gL~V~~~rM~~Nl~~t~glI~SE~vm~aLa~~~lgR~~Ah~~V~~~a~~A~ 76 (124)
.||..+|++ +.++++++..+..+++||+||++||++|++.+.|++ +.|++. +||+.||+++++ +.
T Consensus 359 ~e~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~vn~erm~~~l~~~~~~~------~~La~~-~g~~~a~~~~~~----a~ 427 (468)
T TIGR00839 359 MEPVIGQAMFESIHILTNACYNLTDKCVNGITANKEICEGYVFNSIGIV------TYLNPF-IGHHNGDIVGKI----CA 427 (468)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHccCEECHHHHHHHHHHhHHHH------HHHhhH-hhHHHHHHHHHH----HH
Confidence 478889999 888888888999999999999999999999888876 778885 899999988664 45
Q ss_pred cCCccchhhhhh
Q psy14321 77 PHRRLTLSESFL 88 (124)
Q Consensus 77 ~~~~~~l~ea~l 88 (124)
++|. ++.|...
T Consensus 428 ~~g~-~l~e~~~ 438 (468)
T TIGR00839 428 ETGK-SVREVVL 438 (468)
T ss_pred HhCC-CHHHHHH
Confidence 5565 5667543
Fumarate hydratase scores as high as 570 bits against this model.
>PRK12425 fumarate hydratase; Provisional
Back Show alignment and domain information
Probab=98.53 E-value=2.1e-07 Score=79.67 Aligned_cols=74 Identities=19% Similarity=0.167 Sum_probs=62.3
Q ss_pred chHhHHHHHHHHHHHHHHhhhhCCeeCHHHHHHHHHhhCCchHHHHHHHHHHHcCCCHHHHHHHHHHhcCccccCCccch
Q psy14321 4 LTLSESFLTTDCLLITLQNVLEGLVVYPKVIQRHIDQELPFMATENIIMAMVKAGGDRQVCHEKIRGALNPLFPHRRLTL 83 (124)
Q Consensus 4 ~~lPe~~~~~~~aL~~~~~ll~gL~V~~~rM~~Nl~~t~glI~SE~vm~aLa~~~lgR~~Ah~~V~~~a~~A~~~~~~~l 83 (124)
..+|++..++++++..+..+++||+||++||++|++. |++ ++.+|++ ++||++||+++ ++|.+++. ++
T Consensus 366 ~~l~s~~~l~~~~~~~~~~~i~~l~vn~erm~~~l~~--~~~----~at~L~~-~ig~~~A~~ia----~~a~~~g~-~l 433 (464)
T PRK12425 366 NLLQSIRLLADGCRNFQQHCVAGLEPDAEQMAAHLER--GLM----LVTALNP-HIGYDKAAEIA----KKAYAEGT-TL 433 (464)
T ss_pred HHHHHHHHHHHHHHHHHHHHHccCEECHHHHHHHHHc--ccH----HHHHhhh-ccCHHHHHHHH----HHHHHhCC-CH
Confidence 5789999999999999999999999999999999998 665 7788898 69999999766 45566665 56
Q ss_pred hhhhhh
Q psy14321 84 SESFLT 89 (124)
Q Consensus 84 ~ea~l~ 89 (124)
.|+++.
T Consensus 434 ~e~~~~ 439 (464)
T PRK12425 434 REAALA 439 (464)
T ss_pred HHHHHh
Confidence 676443
>PRK13353 aspartate ammonia-lyase; Provisional
Back Show alignment and domain information
Probab=98.42 E-value=5.2e-07 Score=77.33 Aligned_cols=77 Identities=10% Similarity=0.061 Sum_probs=64.1
Q ss_pred CccchHhHHHHHH---H-HHHHHHHhhhhCCeeCHHHHHHHHHhhCCchHHHHHHHHHHHcCCCHHHHHHHHHHhcCccc
Q psy14321 1 MKRLTLSESFLTT---D-CLLITLQNVLEGLVVYPKVIQRHIDQELPFMATENIIMAMVKAGGDRQVCHEKIRGALNPLF 76 (124)
Q Consensus 1 ~Ew~~lPe~~~~~---~-~aL~~~~~ll~gL~V~~~rM~~Nl~~t~glI~SE~vm~aLa~~~lgR~~Ah~~V~~~a~~A~ 76 (124)
.||..+|+.+..+ . ++...+..+++||+||++||++|++.+.|++ ..|++. + ||++|.++++.|.
T Consensus 361 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~gL~vn~erm~~~l~~~~~l~------t~La~~-L----gh~~v~~~~~~a~ 429 (473)
T PRK13353 361 MEPVIAFNLLESISILTNACRAFTDNCVKGIEANEERCKEYVEKSVGIA------TALNPH-I----GYEAAARIAKEAI 429 (473)
T ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHHccCEECHHHHHHHHHhCcchH------HHHHHH-H----HHHHHHHHHHHHH
Confidence 3788999999988 5 5555666899999999999999999999987 677874 6 5999999999999
Q ss_pred cCCccchhhhhhh
Q psy14321 77 PHRRLTLSESFLT 89 (124)
Q Consensus 77 ~~~~~~l~ea~l~ 89 (124)
++|. ++.|.+..
T Consensus 430 ~~g~-~l~e~~~~ 441 (473)
T PRK13353 430 ATGR-SVRELALE 441 (473)
T ss_pred HhCC-CHHHHHhh
Confidence 8886 67676544
>PRK14515 aspartate ammonia-lyase; Provisional
Back Show alignment and domain information
Probab=98.41 E-value=2.9e-07 Score=79.10 Aligned_cols=76 Identities=7% Similarity=0.079 Sum_probs=59.4
Q ss_pred ccchH-h----HHHH---HHHHHHHH-HHhhhhCCeeCHHHHHHHHHhhCCchHHHHHHHHHHHcCCCHHHHHHHHHHhc
Q psy14321 2 KRLTL-S----ESFL---TTDCLLIT-LQNVLEGLVVYPKVIQRHIDQELPFMATENIIMAMVKAGGDRQVCHEKIRGAL 72 (124)
Q Consensus 2 Ew~~l-P----e~~~---~~~~aL~~-~~~ll~gL~V~~~rM~~Nl~~t~glI~SE~vm~aLa~~~lgR~~Ah~~V~~~a 72 (124)
||..+ | +++. ++..++.. +.++++||+||++||++|++.+.|++ .+|++ ++||+. |.+++
T Consensus 363 e~n~~~p~i~~~l~~si~~l~~al~~~~~~~l~gl~vn~erm~~~l~~s~~l~------t~La~-~iG~~~----v~~~a 431 (479)
T PRK14515 363 ELNVMEPVLVFNLLQSISIMNNGFRAFTDNCLKGIEANEDRLKEYVEKSVGII------TAVNP-HIGYEA----AARVA 431 (479)
T ss_pred HHHHhcchhHHHHHHHHHHHHHHHHHHHHHHHccCEECHHHHHHHHHhCccHH------HHhcc-hhcHHH----HHHHH
Confidence 56666 6 6666 89999944 55599999999999999999999988 89998 799766 55555
Q ss_pred CccccCCccchhhhhhh
Q psy14321 73 NPLFPHRRLTLSESFLT 89 (124)
Q Consensus 73 ~~A~~~~~~~l~ea~l~ 89 (124)
++|.+++. ++.|++..
T Consensus 432 ~~A~~~g~-~l~e~~~~ 447 (479)
T PRK14515 432 KEAIATGQ-SVRELCVK 447 (479)
T ss_pred HHHHHhCC-CHHHHHHh
Confidence 66677776 67676444
>cd01596 Aspartase_like aspartase (L-aspartate ammonia-lyase) and fumarase class II enzymes
Back Show alignment and domain information
Probab=98.40 E-value=5.3e-07 Score=76.88 Aligned_cols=76 Identities=17% Similarity=0.155 Sum_probs=64.1
Q ss_pred ccc----hHhHHHHHHHHHHHHHHhhhhCCeeCHHHHHHHHHhhCCchHHHHHHHHHHHcCCCHHHHHHHHHHhcCcccc
Q psy14321 2 KRL----TLSESFLTTDCLLITLQNVLEGLVVYPKVIQRHIDQELPFMATENIIMAMVKAGGDRQVCHEKIRGALNPLFP 77 (124)
Q Consensus 2 Ew~----~lPe~~~~~~~aL~~~~~ll~gL~V~~~rM~~Nl~~t~glI~SE~vm~aLa~~~lgR~~Ah~~V~~~a~~A~~ 77 (124)
||. .+|+++.+.++++..+..+++||+||++||++|++.+.|++ +.|++. +||+.||+++++ +.+
T Consensus 357 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~v~~~rm~~~l~~~~~~~------t~LA~~-lg~~~a~~~v~~----a~~ 425 (450)
T cd01596 357 KPVIAYNLLQSIRLLANACRSFRDKCVEGIEANEERCKEYVENSLMLV------TALNPH-IGYEKAAEIAKE----ALK 425 (450)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHccCEECHHHHHHHHHhCcchH------HHHhHH-HhHHHHHHHHHH----HHH
Confidence 677 89999999999999999999999999999999999999987 788984 999999997775 445
Q ss_pred CCccchhhhhhh
Q psy14321 78 HRRLTLSESFLT 89 (124)
Q Consensus 78 ~~~~~l~ea~l~ 89 (124)
+|. ++.+.+..
T Consensus 426 ~g~-~l~~~~~~ 436 (450)
T cd01596 426 EGR-TLREAALE 436 (450)
T ss_pred cCC-CHHHHHHH
Confidence 554 56565443
This group contains aspartase (L-aspartate ammonia-lyase), fumarase class II enzymes, and related proteins. It is a member of the Lyase class I family. Members of this family for the most part catalyze similar beta-elimination reactions in which a C-N or C-O bond is cleaved with the release of fumarate as one of the products. These proteins are active as tetramers. The four active sites of the homotetrameric enzyme are each formed by residues from three different subunits. Aspartase catalyzes the reversible deamination of aspartic acid. Fumarase catalyzes the reversible hydration/dehydration of fumarate to L-malate during the Krebs cycle.
>COG0015 PurB Adenylosuccinate lyase [Nucleotide transport and metabolism]
Back Show alignment and domain information
Probab=97.03 E-value=0.00027 Score=60.57 Aligned_cols=40 Identities=38% Similarity=0.587 Sum_probs=36.7
Q ss_pred CccchhhhhhhHHHHHHHHHhhhcCCccCHHHHhh-hhhhh
Q psy14321 79 RRLTLSESFLTTDCLLITLQNVLKGLVVYPKVIQR-LNTLR 118 (124)
Q Consensus 79 ~~~~l~ea~l~~~~~l~~~~~v~~~l~v~~~~m~~-~~~~~ 118 (124)
+|..||++|...|.+|+.+.++++||.|||++|.+ ++...
T Consensus 316 er~~Lp~~~~~~~~aL~~~~~vl~~L~v~~~~m~~nL~~~~ 356 (438)
T COG0015 316 ERVILPDAFIAADGALNRLLNVLEGLEVNPERMRRNLDLTL 356 (438)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhCeeCHHHHHHHHhhcc
Confidence 57789999999999999999999999999999999 77554
>COG0165 ArgH Argininosuccinate lyase [Amino acid transport and metabolism]
Back Show alignment and domain information
Probab=96.47 E-value=0.026 Score=48.79 Aligned_cols=78 Identities=21% Similarity=0.230 Sum_probs=67.2
Q ss_pred HhHHHHHHHHHHHHHHhhhhCCeeCHHHHHHHHHhhCCchHHHHHHHHHHHcCCCHHHHHHHHHHhcCccccCCccchhh
Q psy14321 6 LSESFLTTDCLLITLQNVLEGLVVYPKVIQRHIDQELPFMATENIIMAMVKAGGDRQVCHEKIRGALNPLFPHRRLTLSE 85 (124)
Q Consensus 6 lPe~~~~~~~aL~~~~~ll~gL~V~~~rM~~Nl~~t~glI~SE~vm~aLa~~~lgR~~Ah~~V~~~a~~A~~~~~~~l~e 85 (124)
+=+++-.+..++..+..++++|+||+++|++.. ..|+..+--+--.|+.+|++=-+||++|-+++..+.+.+. +|++
T Consensus 329 lfds~~t~~~~l~~~~~mv~~l~vn~e~~~~a~--~~gfs~aTdlAd~lv~kGvPFReAh~ivG~~v~~~~~~~~-~l~~ 405 (459)
T COG0165 329 LFDSVDTLEDSLRVLAGMVSGLTVNKERMREAA--EAGFSTATDLADYLVRKGVPFREAHEIVGEAVRRAEERGK-DLAD 405 (459)
T ss_pred HHHHHHHHHHHHHHHHHHHccCeeCHHHHHHHh--hcccchHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHcCC-CHHh
Confidence 346777888899999999999999999999975 5677777777788888899999999999999999999988 4656
Q ss_pred h
Q psy14321 86 S 86 (124)
Q Consensus 86 a 86 (124)
.
T Consensus 406 l 406 (459)
T COG0165 406 L 406 (459)
T ss_pred c
Confidence 4
>PF08328 ASL_C: Adenylosuccinate lyase C-terminal; InterPro: IPR013539 This domain is found at the C terminus of adenylosuccinate lyase(ASL; PurB in Escherichia coli)
Back Show alignment and domain information
Probab=95.90 E-value=0.032 Score=39.94 Aligned_cols=93 Identities=17% Similarity=0.147 Sum_probs=66.2
Q ss_pred HhHHHHHHHHHHHHHHhhhhCCeeCHHHHHHHHHhhCCchHHHHHHHHHHHcCCCHHHHHHHHHHhcCccccCCccchhh
Q psy14321 6 LSESFLTTDCLLITLQNVLEGLVVYPKVIQRHIDQELPFMATENIIMAMVKAGGDRQVCHEKIRGALNPLFPHRRLTLSE 85 (124)
Q Consensus 6 lPe~~~~~~~aL~~~~~ll~gL~V~~~rM~~Nl~~t~glI~SE~vm~aLa~~~lgR~~Ah~~V~~~a~~A~~~~~~~l~e 85 (124)
+.-+|.++--+...+..-+++|.||+++|.++|+.+-. +.||++=..|-. .|=+++||.++++++-. . +
T Consensus 16 iGva~~~sliA~~s~lkGl~Kl~vn~~~l~~dL~~nWe-VlaEpIQTvmRr--~g~~~pYE~LK~lTRg~----~--i-- 84 (115)
T PF08328_consen 16 IGVAFGHSLIAYKSLLKGLGKLEVNEERLAEDLDENWE-VLAEPIQTVMRR--YGIPNPYEKLKELTRGK----K--I-- 84 (115)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTEEE-HHHHHHHHCT-GG-GGHHHHHHHHHH--TT-SSHHHHHHHHHTTS----------
T ss_pred hhHHHHHHHHHHHHHHHHHhcccCCHHHHHHHHHHCHH-HHHHHHHHHHHH--cCCCCHHHHHHHHHcCC----C--C--
Confidence 34566777777888888999999999999999999886 799999988887 56688999999998632 1 1
Q ss_pred hhhhHHHHHHHHHhhhcCCccCHHHHhhhhh
Q psy14321 86 SFLTTDCLLITLQNVLKGLVVYPKVIQRLNT 116 (124)
Q Consensus 86 a~l~~~~~l~~~~~v~~~l~v~~~~m~~~~~ 116 (124)
.. .-+....++|.|.++.-++++.
T Consensus 85 ---t~----~~l~~fI~~L~ip~~~k~~L~~ 108 (115)
T PF08328_consen 85 ---TK----EDLREFIESLDIPEEAKARLLA 108 (115)
T ss_dssp ----H----HHHHHHHHTSSS-HHHHHHHHH
T ss_pred ---CH----HHHHHHHHhCCCCHHHHHHHHh
Confidence 11 1244566777777776555543
It has been identified in bacteria, eukaryotes and archaea and is found together with the lyase domain IPR000362 from INTERPRO. ASL catalyses the cleavage of succinylaminoimidazole carboxamide ribotide to aminoimidazole carboxamide ribotide and fumarate and the cleavage of adenylosuccinate to adenylate and fumarate []. ; GO: 0004018 N6-(1,2-dicarboxyethyl)AMP AMP-lyase (fumarate-forming) activity, 0006188 IMP biosynthetic process; PDB: 2HVG_A 2QGA_C 2PTS_A 2PTR_A 2PTQ_B 3BHG_A 3GZH_A.
>KOG2700|consensus
Back Show alignment and domain information
Probab=95.55 E-value=0.014 Score=50.36 Aligned_cols=42 Identities=52% Similarity=0.780 Sum_probs=37.1
Q ss_pred cccCCccchhhhhhhHHHHHHHHHhhhcCCccCHHHHhh-hhh
Q psy14321 75 LFPHRRLTLSESFLTTDCLLITLQNVLKGLVVYPKVIQR-LNT 116 (124)
Q Consensus 75 A~~~~~~~l~ea~l~~~~~l~~~~~v~~~l~v~~~~m~~-~~~ 116 (124)
..+..+..+|++|+..|..|+...+|..|++|||++|++ +..
T Consensus 330 dSa~~rivlP~~Fl~ad~~L~~~~ni~~gl~v~p~~i~r~i~~ 372 (481)
T KOG2700|consen 330 DSANRRIVLPDAFLTADGNLGTLLNILEGLVVYPKVIERNIRD 372 (481)
T ss_pred cccccceechHHHHHHHHHHHHHHHHHhhcccccHHHHHHHHh
Confidence 344578899999999999999999999999999999998 543
>PRK08470 adenylosuccinate lyase; Provisional
Back Show alignment and domain information
Probab=93.95 E-value=0.043 Score=46.84 Aligned_cols=38 Identities=45% Similarity=0.789 Sum_probs=34.6
Q ss_pred CccchhhhhhhHHHHHHHHHhhhcCCccCHHHHhh-hhh
Q psy14321 79 RRLTLSESFLTTDCLLITLQNVLKGLVVYPKVIQR-LNT 116 (124)
Q Consensus 79 ~~~~l~ea~l~~~~~l~~~~~v~~~l~v~~~~m~~-~~~ 116 (124)
++..+++++...+.++..+..+++||.||||+|++ ++.
T Consensus 309 e~~~l~~~~~~~~~~l~~~~~~l~~l~v~~~rm~~nl~~ 347 (442)
T PRK08470 309 ERFILPDAFITTDFMLHRLNNVIENLVVYPENMMKNLNL 347 (442)
T ss_pred HhhhHHHHHHHHHHHHHHHHHHHccCEECHHHHHHHHHh
Confidence 46678999999999999999999999999999999 753
>PRK07380 adenylosuccinate lyase; Provisional
Back Show alignment and domain information
Probab=93.73 E-value=0.045 Score=46.64 Aligned_cols=37 Identities=27% Similarity=0.594 Sum_probs=34.2
Q ss_pred CccchhhhhhhHHHHHHHHHhhhcCCccCHHHHhh-hh
Q psy14321 79 RRLTLSESFLTTDCLLITLQNVLKGLVVYPKVIQR-LN 115 (124)
Q Consensus 79 ~~~~l~ea~l~~~~~l~~~~~v~~~l~v~~~~m~~-~~ 115 (124)
+|..+++++...+.++..+.++++||.|||++|++ +.
T Consensus 309 e~~~l~~~~~~~~~~l~~~~~~l~~L~v~~~rm~~nl~ 346 (431)
T PRK07380 309 ERVMLPDCSILLHFMLREMTDLVKNLLVYPENMRRNMN 346 (431)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHccCEECHHHHHHHHH
Confidence 46689999999999999999999999999999999 75
>PRK07492 adenylosuccinate lyase; Provisional
Back Show alignment and domain information
Probab=93.51 E-value=0.059 Score=45.98 Aligned_cols=39 Identities=33% Similarity=0.495 Sum_probs=35.0
Q ss_pred CCccchhhhhhhHHHHHHHHHhhhcCCccCHHHHhh-hhh
Q psy14321 78 HRRLTLSESFLTTDCLLITLQNVLKGLVVYPKVIQR-LNT 116 (124)
Q Consensus 78 ~~~~~l~ea~l~~~~~l~~~~~v~~~l~v~~~~m~~-~~~ 116 (124)
.+|..+|+++...+.++..+..+++||.|||++|++ ++.
T Consensus 311 ~e~~~lp~~~~~~~~~l~~~~~~l~~L~v~~~rm~~nl~~ 350 (435)
T PRK07492 311 VERMIGPDATITLDFALNRLAGVIEKLVVYPENMLKNLNK 350 (435)
T ss_pred HhhhHHHHHHHHHHHHHHHHHHHHccCEECHHHHHHHHhh
Confidence 356688899999999999999999999999999999 763
>PRK08937 adenylosuccinate lyase; Provisional
Back Show alignment and domain information
Probab=93.42 E-value=0.068 Score=40.71 Aligned_cols=37 Identities=41% Similarity=0.782 Sum_probs=33.9
Q ss_pred ccchhhhhhhHHHHHHHHHhhhcCCccCHHHHhh-hhh
Q psy14321 80 RLTLSESFLTTDCLLITLQNVLKGLVVYPKVIQR-LNT 116 (124)
Q Consensus 80 ~~~l~ea~l~~~~~l~~~~~v~~~l~v~~~~m~~-~~~ 116 (124)
+..+++++...+..+..+.++++|+.||+|+|++ +..
T Consensus 107 ~~~l~~~~~~~~~~l~~~~~~l~~l~v~~~rm~~~~~~ 144 (216)
T PRK08937 107 RIALPDAFLALDYILNRFVNILENLVVFPENIERNLDK 144 (216)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHccCEECHHHHHHHHHH
Confidence 5689999999999999999999999999999998 653
>COG0114 FumC Fumarase [Energy production and conversion]
Back Show alignment and domain information
Probab=92.19 E-value=0.26 Score=42.35 Aligned_cols=90 Identities=16% Similarity=0.147 Sum_probs=63.0
Q ss_pred hHhHHHHHHHHHHHHHHhhhhCCeeCHHHHHHHHHhhCCchHHHHHHHHHHHcCCCHHHHHHHHHHhcCccccCCccchh
Q psy14321 5 TLSESFLTTDCLLITLQNVLEGLVVYPKVIQRHIDQELPFMATENIIMAMVKAGGDRQVCHEKIRGALNPLFPHRRLTLS 84 (124)
Q Consensus 5 ~lPe~~~~~~~aL~~~~~ll~gL~V~~~rM~~Nl~~t~glI~SE~vm~aLa~~~lgR~~Ah~~V~~~a~~A~~~~~~~l~ 84 (124)
.|..+-.+++++-.-....+.|+++|.+||.++++.+.- +.-+|.+ .+|=+.|-++ +..|+.+|+ +|.
T Consensus 368 ~LqS~~LLada~~~f~~~ci~gie~n~~~i~~~l~~Slm------LVTaLnp-~IGYdkAa~I----AK~A~keg~-tlr 435 (462)
T COG0114 368 FLQSVRLLADAMRSFADHCIVGIEPNEERIKELLERSLM------LVTALNP-HIGYDKAAKI----AKKAHKEGT-TLR 435 (462)
T ss_pred HHHHHHHHHHHHHHHHHHHhhccccCHHHHHHHHhhCch------HHHhccc-ccchHHHHHH----HHHHHHCCC-cHH
Confidence 455566677777777788889999999999999987654 4557777 5887666554 557788887 777
Q ss_pred hhhhhHHHH-HHHHHhhhcCCccCHHHH
Q psy14321 85 ESFLTTDCL-LITLQNVLKGLVVYPKVI 111 (124)
Q Consensus 85 ea~l~~~~~-l~~~~~v~~~l~v~~~~m 111 (124)
|+++..+++ -.-+.++ |+|++|
T Consensus 436 eaa~~~G~lte~efd~~-----v~Pe~m 458 (462)
T COG0114 436 EAALELGLLSEEEFDKL-----VDPEKM 458 (462)
T ss_pred HHHHHcCCCCHHHHHHh-----cCHHHh
Confidence 876666554 2333332 456655
>PRK09053 3-carboxy-cis,cis-muconate cycloisomerase; Provisional
Back Show alignment and domain information
Probab=90.40 E-value=0.25 Score=42.17 Aligned_cols=36 Identities=22% Similarity=0.226 Sum_probs=33.3
Q ss_pred ccchhhhhhhHHHHHHHHHhhhcCCccCHHHHhh-hh
Q psy14321 80 RLTLSESFLTTDCLLITLQNVLKGLVVYPKVIQR-LN 115 (124)
Q Consensus 80 ~~~l~ea~l~~~~~l~~~~~v~~~l~v~~~~m~~-~~ 115 (124)
+..+++++...+..+..+.++++|+.||||+|++ +.
T Consensus 326 ~~~l~~~~~~~~~al~~~~~~l~~l~v~~erm~~~l~ 362 (452)
T PRK09053 326 WDTLPELACLAAGALAQMAQIVEGLEVDAARMRANLD 362 (452)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHcCCEECHHHHHHHHH
Confidence 4588899999999999999999999999999999 65
>KOG1316|consensus
Back Show alignment and domain information
Probab=89.82 E-value=0.75 Score=39.18 Aligned_cols=73 Identities=16% Similarity=0.102 Sum_probs=62.5
Q ss_pred hHhHHHHHHHHHHHHHHhhhhCCeeCHHHHHHHHHhhCCchHHHHHHHHHHHcCCCHHHHHHHHHHhcCccccCCc
Q psy14321 5 TLSESFLTTDCLLITLQNVLEGLVVYPKVIQRHIDQELPFMATENIIMAMVKAGGDRQVCHEKIRGALNPLFPHRR 80 (124)
Q Consensus 5 ~lPe~~~~~~~aL~~~~~ll~gL~V~~~rM~~Nl~~t~glI~SE~vm~aLa~~~lgR~~Ah~~V~~~a~~A~~~~~ 80 (124)
.+=|++-....++.-+..++++|+||+++|.+-|-. -+.+--+.--|.++|++=-++|+++-++...|.+.|.
T Consensus 331 p~Fds~~tv~~~l~v~tgv~stltvn~e~m~~aLt~---dmlATdlA~YLVrKGvPFRqtHhisG~~V~~ae~rg~ 403 (464)
T KOG1316|consen 331 PLFDSSKTVSDSLQVATGVISTLTVNQENMEKALTP---DMLATDLAYYLVRKGVPFRQTHHISGKAVRMAEERGV 403 (464)
T ss_pred HHHhhHHHHHHHHHHHHHHhhheeECHHHHhhccCc---hhhHhHHHHHHHHcCCCchhhhhhhHHHHHHHHHcCC
Confidence 345677788888999999999999999999987755 4567778888999999999999999999988888775
>cd03302 Adenylsuccinate_lyase_2 Adenylsuccinate lyase (ASL)_subgroup 2
Back Show alignment and domain information
Probab=89.24 E-value=0.35 Score=41.19 Aligned_cols=37 Identities=57% Similarity=1.011 Sum_probs=33.8
Q ss_pred ccchhhhhhhHHHHHHHHHhhhcCCccCHHHHhh-hhh
Q psy14321 80 RLTLSESFLTTDCLLITLQNVLKGLVVYPKVIQR-LNT 116 (124)
Q Consensus 80 ~~~l~ea~l~~~~~l~~~~~v~~~l~v~~~~m~~-~~~ 116 (124)
+..+++++...+.++..+..+++|+.||+++|++ +..
T Consensus 322 ~~~l~~~~~~~~~~l~~~~~~l~~l~v~~~rm~~~l~~ 359 (436)
T cd03302 322 RIAIPEAFLAADAILITLQNISEGLVVYPKVIERHIRQ 359 (436)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHcCCEECHHHHHHHHHh
Confidence 5578999999999999999999999999999999 654
This subgroup contains mainly eukaryotic proteins similar to ASL, a member of the Lyase class I family. Members of this family for the most part catalyze similar beta-elimination reactions in which a C-N or C-O bond is cleaved with the release of fumarate as one of the products. These proteins are active as tetramers. The four active sites of the homotetrameric enzyme are each formed by residues from three different subunits. ASL catalyzes two steps in the de novo purine biosynthesis: the conversion of 5-aminoimidazole-(N-succinylocarboxamide) ribotide (SAICAR) into 5-aminoimidazole-4-carboxamide ribotide (AICAR) and, the conversion of adenylsuccinate (SAMP) into adenosine monophosphate (AMP). ASL deficiency has been linked to several pathologies including psychomotor retardation with autistic features, epilepsy and muscle wasting.
>PRK09285 adenylosuccinate lyase; Provisional
Back Show alignment and domain information
Probab=89.19 E-value=0.42 Score=41.16 Aligned_cols=35 Identities=20% Similarity=0.015 Sum_probs=31.7
Q ss_pred CccchhhhhhhHHHHHHHHHhhhcCCccCHHHHhh-h
Q psy14321 79 RRLTLSESFLTTDCLLITLQNVLKGLVVYPKVIQR-L 114 (124)
Q Consensus 79 ~~~~l~ea~l~~~~~l~~~~~v~~~l~v~~~~m~~-~ 114 (124)
++.. ++++...+.++..+..+++||.|||++|++ +
T Consensus 343 e~~~-~~~~~~~~~~l~~~~~~l~~L~V~~~rm~~nl 378 (456)
T PRK09285 343 LRNL-GVAFGYSLIAYDSLLKGLGKLEVNEARLAEDL 378 (456)
T ss_pred hcch-HHHHHHHHHHHHHHHHHHccCEECHHHHHHHH
Confidence 4534 899999999999999999999999999998 5
>cd01360 Adenylsuccinate_lyase_1 Adenylsuccinate lyase (ASL)_subgroup 1
Back Show alignment and domain information
Probab=89.09 E-value=0.37 Score=40.37 Aligned_cols=36 Identities=39% Similarity=0.688 Sum_probs=33.4
Q ss_pred ccchhhhhhhHHHHHHHHHhhhcCCccCHHHHhh-hh
Q psy14321 80 RLTLSESFLTTDCLLITLQNVLKGLVVYPKVIQR-LN 115 (124)
Q Consensus 80 ~~~l~ea~l~~~~~l~~~~~v~~~l~v~~~~m~~-~~ 115 (124)
+..+++++...+.++..+..+++++.||+++|++ +.
T Consensus 307 ~~~l~~~~~~~~~~l~~~~~~l~~l~v~~~rm~~~l~ 343 (387)
T cd01360 307 RVILPDATILLDYILRRMTRVLENLVVYPENMRRNLN 343 (387)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHccCEECHHHHHHHHH
Confidence 5688999999999999999999999999999999 65
This subgroup contains bacterial and archeal proteins similar to ASL, a member of the Lyase class I family. Members of this family for the most part catalyze similar beta-elimination reactions in which a C-N or C-O bond is cleaved with the release of fumarate as one of the products. These proteins are active as tetramers. The four active sites of the homotetrameric enzyme are each formed by residues from three different subunits. ASL catalyzes two steps in the de novo purine biosynthesis: the conversion of 5-aminoimidazole-(N-succinylocarboxamide) ribotide (SAICAR) into 5-aminoimidazole-4-carboxamide ribotide (AICAR) and, the conversion of adenylsuccinate (SAMP) into adenosine monophosphate (AMP).
>cd01598 PurB PurB_like adenylosuccinases (adenylsuccinate lyase, ASL)
Back Show alignment and domain information
Probab=88.92 E-value=0.42 Score=40.82 Aligned_cols=34 Identities=15% Similarity=0.100 Sum_probs=30.9
Q ss_pred chhhhhhhHHHHHHHHHhhhcCCccCHHHHhh-hh
Q psy14321 82 TLSESFLTTDCLLITLQNVLKGLVVYPKVIQR-LN 115 (124)
Q Consensus 82 ~l~ea~l~~~~~l~~~~~v~~~l~v~~~~m~~-~~ 115 (124)
.+++++...+.++..+..+++||.||||+|++ ++
T Consensus 323 ~~~~~~~~~~~al~~~~~ll~~L~v~~~rm~~nl~ 357 (425)
T cd01598 323 NIGVAFGHSLIAYKSLLRGLDKLELNEARLLEDLD 357 (425)
T ss_pred cHHHHHHHHHHHHHHHHHHHccCEECHHHHHHHHH
Confidence 34899999999999999999999999999999 53
This subgroup contains EcASL, the product of the purB gene in Escherichia coli, and related proteins. It is a member of the Lyase class I family of the Lyase_I superfamily. Members of the Lyase class I family function as homotetramers to catalyze similar beta-elimination reactions in which a Calpha-N or Calpha-O bond is cleaved with the subsequent release of fumarate as one of the products. The four active sites of the homotetrameric enzyme are each formed by residues from three different subunits. ASL catalyzes two non-sequential steps in the de novo purine biosynthesis pathway: the conversion of 5-aminoimidazole-(N-succinylocarboxamide) ribotide (SAICAR) into 5-aminoimidazole-4-carboxamide ribotide (AICAR) and; the conversion of adenylsuccinate (SAMP) into adenosine monophosphate (AMP).
>cd01595 Adenylsuccinate_lyase_like Adenylsuccinate lyase (ASL)_like
Back Show alignment and domain information
Probab=88.89 E-value=0.39 Score=40.00 Aligned_cols=37 Identities=43% Similarity=0.669 Sum_probs=33.8
Q ss_pred ccchhhhhhhHHHHHHHHHhhhcCCccCHHHHhh-hhh
Q psy14321 80 RLTLSESFLTTDCLLITLQNVLKGLVVYPKVIQR-LNT 116 (124)
Q Consensus 80 ~~~l~ea~l~~~~~l~~~~~v~~~l~v~~~~m~~-~~~ 116 (124)
+..+++++...+.++..+..+++|+.||+++|++ ++.
T Consensus 308 ~~~l~~~~~~~~~~l~~~~~~l~~l~v~~~~m~~~l~~ 345 (381)
T cd01595 308 RNILPDAFLLLDAALSRLQGLLEGLVVNPERMRRNLDL 345 (381)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHcCCEECHHHHHHHHHh
Confidence 5688899999999999999999999999999998 654
This group contains ASL, prokaryotic-type 3-carboxy-cis,cis-muconate cycloisomerase (pCMLE), and related proteins. These proteins are members of the Lyase class I family. Members of this family for the most part catalyze similar beta-elimination reactions in which a C-N or C-O bond is cleaved with the release of fumarate as one of the products. These proteins are active as tetramers. The four active sites of the homotetrameric enzyme are each formed by residues from three different subunits. ASL catalyzes two steps in the de novo purine biosynthesis: the conversion of 5-aminoimidazole-(N-succinylocarboxamide) ribotide (SAICAR) into 5-aminoimidazole-4-carboxamide ribotide (AICAR) and; the conversion of adenylsuccinate (SAMP) into adenosine monophosphate (AMP). pCMLE catalyzes the cyclization of 3-carboxy-cis,cis-muconate (3CM) to 4-carboxy-muconolactone, in the beta-ketoadipate pathway. ASL deficiency has been linked t
>PRK06389 argininosuccinate lyase; Provisional
Back Show alignment and domain information
Probab=88.86 E-value=2.6 Score=36.35 Aligned_cols=68 Identities=15% Similarity=0.046 Sum_probs=53.8
Q ss_pred HhHHHHHHHHHHHHHHhhhhCCeeCHHHHHHHHHhhCCchHHHHHHHHHHHcCCCHHHHHHHHHHhcCcccc
Q psy14321 6 LSESFLTTDCLLITLQNVLEGLVVYPKVIQRHIDQELPFMATENIIMAMVKAGGDRQVCHEKIRGALNPLFP 77 (124)
Q Consensus 6 lPe~~~~~~~aL~~~~~ll~gL~V~~~rM~~Nl~~t~glI~SE~vm~aLa~~~lgR~~Ah~~V~~~a~~A~~ 77 (124)
+-+++..+..++..+..++++++||++| .+. ..++...++-. -.+..+|++=-+||++|-++...+-.
T Consensus 321 ~~~~~~~~~~~l~l~~~~i~~l~~~~~~-~~a--~~~~~~ATdlA-~~lv~~GipFR~AH~~Vg~~V~~~~~ 388 (434)
T PRK06389 321 TISFINNFERILLGLPDLLYNIKFEITN-EKN--IKNSVYATYNA-WLAFKNGMDWKSAYAYIGNKIREGEV 388 (434)
T ss_pred HHHHHHHHHHHHHHHHHHHHhCeECHHH-Hhh--ccCCCcHHHHH-HHHHHcCCCHHHHHHHHHHHHHhccc
Confidence 4567777888999999999999999999 433 46666666665 66667799999999999998877543
>PRK08540 adenylosuccinate lyase; Reviewed
Back Show alignment and domain information
Probab=88.20 E-value=0.35 Score=41.25 Aligned_cols=36 Identities=39% Similarity=0.588 Sum_probs=33.1
Q ss_pred ccchhhhhhhHHHHHHHHHhhhcCCccCHHHHhh-hh
Q psy14321 80 RLTLSESFLTTDCLLITLQNVLKGLVVYPKVIQR-LN 115 (124)
Q Consensus 80 ~~~l~ea~l~~~~~l~~~~~v~~~l~v~~~~m~~-~~ 115 (124)
+..+++++...+.++..+.++++++.||+|+|++ +.
T Consensus 322 ~~~l~~~~~~~~~~l~~~~~~l~~l~v~~~rm~~~l~ 358 (449)
T PRK08540 322 RIIFPESCVLTDHILKLMIKVLEGLRFNPENIRRNLE 358 (449)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHccCEECHHHHHHHHH
Confidence 5678889999999999999999999999999999 64
>PLN02848 adenylosuccinate lyase
Back Show alignment and domain information
Probab=87.89 E-value=0.49 Score=40.79 Aligned_cols=35 Identities=9% Similarity=-0.005 Sum_probs=31.4
Q ss_pred chhhhhhhHHHHHHHHHhhhcCCccCHHHHhh-hhh
Q psy14321 82 TLSESFLTTDCLLITLQNVLKGLVVYPKVIQR-LNT 116 (124)
Q Consensus 82 ~l~ea~l~~~~~l~~~~~v~~~l~v~~~~m~~-~~~ 116 (124)
.+++++...+.++..+..+++||+||+++|++ +..
T Consensus 348 ~~~~~~~~~~~al~~~~~~l~~L~v~~~rm~~nl~~ 383 (458)
T PLN02848 348 NMGVGLGHSLLAYKSTLRGIGKLQVNEARLAEDLDQ 383 (458)
T ss_pred cHHHHHHHHHHHHHHHHHHHccCEECHHHHHHHHHc
Confidence 34889999999999999999999999999999 654
>TIGR00928 purB adenylosuccinate lyase
Back Show alignment and domain information
Probab=87.27 E-value=0.54 Score=39.90 Aligned_cols=36 Identities=44% Similarity=0.642 Sum_probs=32.5
Q ss_pred ccchhhhhhhHHHHHHHHHhhhcCCccCHHHHhh-hh
Q psy14321 80 RLTLSESFLTTDCLLITLQNVLKGLVVYPKVIQR-LN 115 (124)
Q Consensus 80 ~~~l~ea~l~~~~~l~~~~~v~~~l~v~~~~m~~-~~ 115 (124)
+..+++++...+.++..+.++++|+.||+|+|++ +.
T Consensus 316 ~~~l~~~~~~~~~~l~~~~~~l~~l~v~~~rm~~~l~ 352 (435)
T TIGR00928 316 RIILPDSFILADIMLKTTLKVVKKLVVNPENILRNLE 352 (435)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHcCCEECHHHHHHHHH
Confidence 3358899999999999999999999999999999 65
This family consists of adenylosuccinate lyase, the enzyme that catalyzes step 8 in the purine biosynthesis pathway for de novo synthesis of IMP and also the final reaction in the two-step sequence from IMP to AMP.
>cd01359 Argininosuccinate_lyase Argininosuccinate lyase (argininosuccinase, ASAL)
Back Show alignment and domain information
Probab=86.26 E-value=0.65 Score=39.34 Aligned_cols=36 Identities=22% Similarity=0.210 Sum_probs=33.4
Q ss_pred CccchhhhhhhHHHHHHHHHhhhcCCccCHHHHhh-h
Q psy14321 79 RRLTLSESFLTTDCLLITLQNVLKGLVVYPKVIQR-L 114 (124)
Q Consensus 79 ~~~~l~ea~l~~~~~l~~~~~v~~~l~v~~~~m~~-~ 114 (124)
.++.+++++...+..+..+..+++++.||+++|++ +
T Consensus 302 ~~~~l~~~~~~~~~al~~~~~~l~~l~v~~~~m~~~l 338 (435)
T cd01359 302 DKEPLFDAVDTLIASLRLLTGVISTLTVNPERMREAA 338 (435)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHhhCEECHHHHHHHH
Confidence 36689999999999999999999999999999998 5
This group contains ASAL and related proteins. It is a member of the Lyase class I family. Members of this family for the most part catalyze similar beta-elimination reactions in which a C-N or C-O bond is cleaved with the release of fumarate as one of the products. These proteins are active as tetramers. The four active sites of the homotetrameric enzyme are each formed by residues from three different subunits. ASAL is a cytosolic enzyme which catalyzes the reversible breakdown of argininosuccinate to arginine and fumarate during arginine biosynthesis. In ureotelic species ASAL also catalyzes a reaction involved in the production of urea. Included in this group are the major soluble avian eye lens proteins from duck, delta 1 and delta 2 crystallin. Of these two isoforms only delta 2 has retained ASAL activity. These crystallins may have evolved by, gene recruitment of ASAL followed by gene duplication.
>cd01357 Aspartase Aspartase
Back Show alignment and domain information
Probab=85.70 E-value=2 Score=36.81 Aligned_cols=39 Identities=8% Similarity=0.110 Sum_probs=29.9
Q ss_pred CCccchhhhhh---hHHHHHHHH-HhhhcCCccCHHHHhh-hhh
Q psy14321 78 HRRLTLSESFL---TTDCLLITL-QNVLKGLVVYPKVIQR-LNT 116 (124)
Q Consensus 78 ~~~~~l~ea~l---~~~~~l~~~-~~v~~~l~v~~~~m~~-~~~ 116 (124)
..+..+++.+. .....+..+ ..+++|+.||+++|++ +..
T Consensus 356 ~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~l~v~~erm~~~l~~ 399 (450)
T cd01357 356 FEPVIAYNLLESIDILTNAVRTLRERCIDGITANEERCREYVEN 399 (450)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHccCEECHHHHHHHHHh
Confidence 34434455444 888899999 4999999999999999 543
This subgroup contains Escherichia coli aspartase (L-aspartate ammonia-lyase), Bacillus aspartase and related proteins. It is a member of the Lyase class I family, which includes both aspartase (L-aspartate ammonia-lyase) and fumarase class II enzymes. Members of this family for the most part catalyze similar beta-elimination reactions in which a C-N or C-O bond is cleaved with the release of fumarate as one of the products. These proteins are active as tetramers. The four active sites of the homotetrameric enzyme are each formed by residues from three different subunits. Aspartase catalyzes the reversible deamination of aspartic acid.
>PLN02646 argininosuccinate lyase
Back Show alignment and domain information
Probab=83.50 E-value=0.93 Score=39.19 Aligned_cols=38 Identities=18% Similarity=0.232 Sum_probs=34.3
Q ss_pred CCccchhhhhhhHHHHHHHHHhhhcCCccCHHHHhh-hh
Q psy14321 78 HRRLTLSESFLTTDCLLITLQNVLKGLVVYPKVIQR-LN 115 (124)
Q Consensus 78 ~~~~~l~ea~l~~~~~l~~~~~v~~~l~v~~~~m~~-~~ 115 (124)
..+.++++++.....++..+..+++++.||+++|++ +.
T Consensus 337 ~~~~~l~~~~~~~~~~l~~~~~~l~~l~v~~~rm~~~l~ 375 (474)
T PLN02646 337 EDKEPLFDSVDTVSDMLEVATEFAQNITFNPERIKKSLP 375 (474)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHccCEECHHHHHHHHH
Confidence 346789999999999999999999999999999998 64
>cd01597 pCLME prokaryotic 3-carboxy-cis,cis-muconate cycloisomerase (CMLE)_like
Back Show alignment and domain information
Probab=83.48 E-value=1 Score=38.15 Aligned_cols=36 Identities=28% Similarity=0.358 Sum_probs=32.4
Q ss_pred ccchhhhhhhHHHHHHHHHhhhcCCccCHHHHhh-hh
Q psy14321 80 RLTLSESFLTTDCLLITLQNVLKGLVVYPKVIQR-LN 115 (124)
Q Consensus 80 ~~~l~ea~l~~~~~l~~~~~v~~~l~v~~~~m~~-~~ 115 (124)
+..+++++...+..+..+.++++++.||+++|++ ++
T Consensus 317 ~~~l~~~~~~~~~~l~~~~~~l~~l~v~~~rm~~~~~ 353 (437)
T cd01597 317 WIALPEIFLLASGALEQAEFLLSGLEVNEDRMRANLD 353 (437)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHcCCEECHHHHHHHHH
Confidence 4567888999999999999999999999999999 64
This subgroup contains pCLME and related proteins, and belongs to the Lyase class I family. Members of this family for the most part catalyze similar beta-elimination reactions in which a C-N or C-O bond is cleaved with the release of fumarate as one of the products. These proteins are active as tetramers. The four active sites of the homotetrameric enzyme are each formed by residues from three different subunits. CMLE catalyzes the cyclization of 3-carboxy-cis,cis-muconate (3CM) to 4-carboxy-muconolactone in the beta-ketoadipate pathway. This pathway is responsible for the catabolism of a variety of aromatic compounds into intermediates of the citric cycle in prokaryotic and eukaryotic micro-organisms.
>PLN00134 fumarate hydratase; Provisional
Back Show alignment and domain information
Probab=81.42 E-value=5.1 Score=34.53 Aligned_cols=37 Identities=19% Similarity=0.151 Sum_probs=31.7
Q ss_pred ccchhhhhhhHHHHHHHHHhhhcCCccCHHHHhh-hhh
Q psy14321 80 RLTLSESFLTTDCLLITLQNVLKGLVVYPKVIQR-LNT 116 (124)
Q Consensus 80 ~~~l~ea~l~~~~~l~~~~~v~~~l~v~~~~m~~-~~~ 116 (124)
+..+++.+...+.++....++++|+.||+|+|++ +..
T Consensus 359 ~~~l~~~~~~~~~~~~~~~~~l~~l~vn~erm~~~l~~ 396 (458)
T PLN00134 359 YNLLHSIRLLGDASASFRKNCVRGIEANRERISKLLHE 396 (458)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHccCEECHHHHHHHHHh
Confidence 4567888889998988889999999999999998 543
>PRK06390 adenylosuccinate lyase; Provisional
Back Show alignment and domain information
Probab=80.88 E-value=1.6 Score=37.34 Aligned_cols=37 Identities=27% Similarity=0.471 Sum_probs=31.7
Q ss_pred CccchhhhhhhHHHHHHHHHhhhcCCccCHHHHhh-hh
Q psy14321 79 RRLTLSESFLTTDCLLITLQNVLKGLVVYPKVIQR-LN 115 (124)
Q Consensus 79 ~~~~l~ea~l~~~~~l~~~~~v~~~l~v~~~~m~~-~~ 115 (124)
++..+++.+...+.++..+..+++|+.||+++|++ +.
T Consensus 321 e~~~~~~~~~~~~~~l~~~~~~l~~l~v~~~rm~~~l~ 358 (451)
T PRK06390 321 ERFTIPYASILIDYVLYNMNDVLSHLIIKEDEIRRNLE 358 (451)
T ss_pred HHhhHHHHHHHHHHHHHHHHHHHcCCEECHHHHHHHHh
Confidence 34447787788889999999999999999999998 55
Homologous Structure Domains
Homologous Domains Detected by HHsearch
Original result of HHsearch against SCOP70(version1.75) database
ID Alignment Graph Length
Definition
Probability Query 124
d1c3ca_ 429
Adenylosuccinate lyase {Thermotoga maritima [TaxId
99.61 d1dofa_ 402
Adenylosuccinate lyase {Archaeon Pyrobaculum aerop
99.59 d1f1oa_ 408
Adenylosuccinate lyase {Bacillus subtilis [TaxId:
99.59 d1q5na_ 444
3-carboxy-cis,cis-muconate cycloisomerase (CMLE) {
99.54 d1re5a_ 448
3-carboxy-cis,cis-muconate cycloisomerase (CMLE) {
99.47 d1tj7a_ 455
Argininosuccinate lyase/delta-crystallin {Escheric
99.23 d1k62b_ 459
Argininosuccinate lyase/delta-crystallin {Human (H
99.19 d1vdka_ 460
Fumarase {Thermus thermophilus [TaxId: 274]}
98.95 d1tjva_ 449
Argininosuccinate lyase/delta-crystallin {Domestic
98.94 d1j3ua_ 462
L-aspartate ammonia lyase {Bacillus sp., ym55-1 [T
98.7 d1fuoa_ 456
Fumarase {Escherichia coli [TaxId: 562]}
98.57 d1jswa_ 459
L-aspartate ammonia lyase {Escherichia coli [TaxId
98.43 d1yfma_ 459
Fumarase {Baker's yeast (Saccharomyces cerevisiae)
98.42 d1f1oa_ 408
Adenylosuccinate lyase {Bacillus subtilis [TaxId:
90.55 d1dofa_ 402
Adenylosuccinate lyase {Archaeon Pyrobaculum aerop
89.47 d1c3ca_ 429
Adenylosuccinate lyase {Thermotoga maritima [TaxId
88.07 d1q5na_ 444
3-carboxy-cis,cis-muconate cycloisomerase (CMLE) {
87.41 d1vdka_ 460
Fumarase {Thermus thermophilus [TaxId: 274]}
82.27 d1k62b_ 459
Argininosuccinate lyase/delta-crystallin {Human (H
82.09 d1jswa_ 459
L-aspartate ammonia lyase {Escherichia coli [TaxId
81.24 d1j3ua_ 462
L-aspartate ammonia lyase {Bacillus sp., ym55-1 [T
81.1
>d1c3ca_ a.127.1.1 (A:) Adenylosuccinate lyase {Thermotoga maritima [TaxId: 2336]}
Back Hide information, alignment and structure
class: All alpha proteins
fold: L-aspartase-like
superfamily: L-aspartase-like
family: L-aspartase/fumarase
domain: Adenylosuccinate lyase
species: Thermotoga maritima [TaxId: 2336]
Probab=99.61 E-value=2.8e-16 Score=128.14 Aligned_cols=91 Identities=13% Similarity=0.279 Sum_probs=84.9
Q ss_pred ccchHhHHHHHHHHHHHHHHhhhhCCeeCHHHHHHHHHhhCCchHHHHHHHHHHHcCCCHHHHHHHHHHhcCccccCCcc
Q psy14321 2 KRLTLSESFLTTDCLLITLQNVLEGLVVYPKVIQRHIDQELPFMATENIIMAMVKAGGDRQVCHEKIRGALNPLFPHRRL 81 (124)
Q Consensus 2 Ew~~lPe~~~~~~~aL~~~~~ll~gL~V~~~rM~~Nl~~t~glI~SE~vm~aLa~~~lgR~~Ah~~V~~~a~~A~~~~~~ 81 (124)
||..+|+++.++.+++..+..+++||+||++||++|++.++|+++||.+++.|+++|+||++||++|++++..|.++++
T Consensus 308 ~~~~~~~~~~~~~~~l~~~~~~i~~L~vn~erm~~nl~~s~g~i~Ae~~~~~Lv~~gl~~~~AheiV~~~a~~a~~~~~- 386 (429)
T d1c3ca_ 308 ERYVFPDATQTLYYMIVTATNVVRNMKVNEERMKKNIDLTKGLVFSQRVLLKLIEKGLTRKEAYDIVQRNALKTWNSEK- 386 (429)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHCEECHHHHHHHHTTTTTGGGHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHTSSS-
T ss_pred cccccchhHHHHHhHhhHHHHHhhccccchHHHHHHHHhhcCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHhCC-
Confidence 7899999999999999999999999999999999999999999999999999999899999999999999999999998
Q ss_pred chhhhhhhHHHH
Q psy14321 82 TLSESFLTTDCL 93 (124)
Q Consensus 82 ~l~ea~l~~~~~ 93 (124)
++.|.+..+..+
T Consensus 387 ~l~d~l~~d~~~ 398 (429)
T d1c3ca_ 387 HFLEYLLEDEEV 398 (429)
T ss_dssp CHHHHHHTCHHH
T ss_pred CHHHHHhcChhh
Confidence 566876665444
>d1dofa_ a.127.1.1 (A:) Adenylosuccinate lyase {Archaeon Pyrobaculum aerophilum [TaxId: 13773]}
Back Show information, alignment and structure
class: All alpha proteins
fold: L-aspartase-like
superfamily: L-aspartase-like
family: L-aspartase/fumarase
domain: Adenylosuccinate lyase
species: Archaeon Pyrobaculum aerophilum [TaxId: 13773]
Probab=99.59 E-value=3.6e-16 Score=126.59 Aligned_cols=89 Identities=21% Similarity=0.370 Sum_probs=82.9
Q ss_pred ccchHhHHHHHHHHHHHHHHhhhhCCeeCHHHHHHHHHhhCCchHHHHHHHHHHHcCCCHHHHHHHHHHhcCccccCCcc
Q psy14321 2 KRLTLSESFLTTDCLLITLQNVLEGLVVYPKVIQRHIDQELPFMATENIIMAMVKAGGDRQVCHEKIRGALNPLFPHRRL 81 (124)
Q Consensus 2 Ew~~lPe~~~~~~~aL~~~~~ll~gL~V~~~rM~~Nl~~t~glI~SE~vm~aLa~~~lgR~~Ah~~V~~~a~~A~~~~~~ 81 (124)
||..+|+++.++.+++..+..++++|+||++||++|++.+.|+++||.+++.|+++|+||++||++|+++++.++++++.
T Consensus 308 ~~~~l~~~~~~~~~~l~~~~~~l~~l~vn~erm~~~l~~s~~~i~ae~~~~~L~~~gl~~~~Ah~~v~~~~~~a~e~~k~ 387 (402)
T d1dofa_ 308 ERVWIPEALLALDEILTSALRVLKNVYIDEERITENLQKALPYILTEFHMNRMIKEGASRAEAYKKAKEVKALTFEYQKW 387 (402)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHCEECHHHHHHHHHHHHHHHCHHHHHHHHHHTTCCHHHHHHHHTTCCCCCCGGGGC
T ss_pred hhhccchhHHHHHHHHHHHHHHHccCEECHHHHHHHHHhhcChhHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHhCCC
Confidence 68899999999999999999999999999999999999999999999999999999999999999999999999999995
Q ss_pred chhhhhhhHH
Q psy14321 82 TLSESFLTTD 91 (124)
Q Consensus 82 ~l~ea~l~~~ 91 (124)
+. |.++.+.
T Consensus 388 ~~-e~l~~d~ 396 (402)
T d1dofa_ 388 PV-ERLIEDA 396 (402)
T ss_dssp CH-HHHHHHH
T ss_pred hH-HHHhhCh
Confidence 54 7754443
>d1f1oa_ a.127.1.1 (A:) Adenylosuccinate lyase {Bacillus subtilis [TaxId: 1423]}
Back Show information, alignment and structure
class: All alpha proteins
fold: L-aspartase-like
superfamily: L-aspartase-like
family: L-aspartase/fumarase
domain: Adenylosuccinate lyase
species: Bacillus subtilis [TaxId: 1423]
Probab=99.59 E-value=1.7e-15 Score=123.01 Aligned_cols=89 Identities=16% Similarity=0.415 Sum_probs=82.9
Q ss_pred ccchHhHHHHHHHHHHHHHHhhhhCCeeCHHHHHHHHHhhCCchHHHHHHHHHHHcCCCHHHHHHHHHHhcCccccCCcc
Q psy14321 2 KRLTLSESFLTTDCLLITLQNVLEGLVVYPKVIQRHIDQELPFMATENIIMAMVKAGGDRQVCHEKIRGALNPLFPHRRL 81 (124)
Q Consensus 2 Ew~~lPe~~~~~~~aL~~~~~ll~gL~V~~~rM~~Nl~~t~glI~SE~vm~aLa~~~lgR~~Ah~~V~~~a~~A~~~~~~ 81 (124)
+|..+|+++.++..++..+..+++||+||++||++|++.++|+++||.+++.|+++|+||.+||++|.+++..|.++|+
T Consensus 301 ~~~~l~~~~~~~~~~l~~~~~~l~~l~vn~e~m~~nl~~~~~~~~a~~~~~~Lv~~gl~~~~Ah~~v~~~~~~a~~~~~- 379 (408)
T d1f1oa_ 301 ERIILPDATIALNYMLNRFSNIVKNLTVFPENMKRNMDRTLGLIYSQRVLLALIDTGLTREEAYDTVQPKAMEAWEKQV- 379 (408)
T ss_pred HhhcchhHHHHHHHHHHHHHHHhhCCeeCHHHHHHHHHhhcCchHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHCC-
Confidence 6889999999999999999999999999999999999999999999999999998899999999999999999999998
Q ss_pred chhhhhhhHH
Q psy14321 82 TLSESFLTTD 91 (124)
Q Consensus 82 ~l~ea~l~~~ 91 (124)
++.|.+..+.
T Consensus 380 ~l~e~l~~~~ 389 (408)
T d1f1oa_ 380 PFRELVEAEE 389 (408)
T ss_pred CHHHHHHccH
Confidence 6667654443
>d1q5na_ a.127.1.1 (A:) 3-carboxy-cis,cis-muconate cycloisomerase (CMLE) {Acinetobacter calcoaceticus [TaxId: 471]}
Back Show information, alignment and structure
class: All alpha proteins
fold: L-aspartase-like
superfamily: L-aspartase-like
family: L-aspartase/fumarase
domain: 3-carboxy-cis,cis-muconate cycloisomerase (CMLE)
species: Acinetobacter calcoaceticus [TaxId: 471]
Probab=99.54 E-value=3.4e-15 Score=121.76 Aligned_cols=88 Identities=22% Similarity=0.308 Sum_probs=82.2
Q ss_pred ccchHhHHHHHHHHHHHHHHhhhhCCeeCHHHHHHHHHhhCCchHHHHHHHHHHHcCCCHHHHHHHHHHhcCccccCCcc
Q psy14321 2 KRLTLSESFLTTDCLLITLQNVLEGLVVYPKVIQRHIDQELPFMATENIIMAMVKAGGDRQVCHEKIRGALNPLFPHRRL 81 (124)
Q Consensus 2 Ew~~lPe~~~~~~~aL~~~~~ll~gL~V~~~rM~~Nl~~t~glI~SE~vm~aLa~~~lgR~~Ah~~V~~~a~~A~~~~~~ 81 (124)
+|..+|+++.+++.++..+..+++||+||++||++|++.+.|+++||+++++|++ ++||++||++|++++..|.++++
T Consensus 322 ~~~~l~~~~~~~~~~l~~~~~~l~~l~vn~erm~~nle~s~~~i~se~~~~~L~~-~ig~~~Ah~iV~~~~~~a~~~~~- 399 (444)
T d1q5na_ 322 EWLSLPEIFQLTAGALERTLDVLKGMEVNAENMHQNIECTHGLIMAEAVMMALAP-HMGRLNAHHVVEAACKTAVAEQK- 399 (444)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHCEECHHHHHHHHHTTTTGGGHHHHHHHHHH-HHCHHHHHHHHHHHHHHHHHHTC-
T ss_pred HhhhhcccchhhhhHHHHHHhHHHHhcchhhHHHHHHHhccChHHHHHHHHHhcc-CCCHHHHHHHHHHHHHHHHHhCC-
Confidence 6888999999999999999999999999999999999999999999999999998 79999999999999999999998
Q ss_pred chhhhhhhHH
Q psy14321 82 TLSESFLTTD 91 (124)
Q Consensus 82 ~l~ea~l~~~ 91 (124)
++.|.+..++
T Consensus 400 ~l~el~~~~~ 409 (444)
T d1q5na_ 400 HLKDIISQVD 409 (444)
T ss_dssp CHHHHHTTCH
T ss_pred CHHHHHHhhh
Confidence 6667755544
>d1re5a_ a.127.1.1 (A:) 3-carboxy-cis,cis-muconate cycloisomerase (CMLE) {Pseudomonas putida, strain KT2440 [TaxId: 303]}
Back Show information, alignment and structure
class: All alpha proteins
fold: L-aspartase-like
superfamily: L-aspartase-like
family: L-aspartase/fumarase
domain: 3-carboxy-cis,cis-muconate cycloisomerase (CMLE)
species: Pseudomonas putida, strain KT2440 [TaxId: 303]
Probab=99.47 E-value=2.9e-14 Score=116.40 Aligned_cols=88 Identities=16% Similarity=0.180 Sum_probs=81.8
Q ss_pred CccchHhHHHHHHHHHHHHHHhhhhCCeeCHHHHHHHHHhhCCchHHHHHHHHHHHcCCCHHHHHHHHHHhcCccccCCc
Q psy14321 1 MKRLTLSESFLTTDCLLITLQNVLEGLVVYPKVIQRHIDQELPFMATENIIMAMVKAGGDRQVCHEKIRGALNPLFPHRR 80 (124)
Q Consensus 1 ~Ew~~lPe~~~~~~~aL~~~~~ll~gL~V~~~rM~~Nl~~t~glI~SE~vm~aLa~~~lgR~~Ah~~V~~~a~~A~~~~~ 80 (124)
.+|..+|+++.++++++..+..+++||+||++||++|++.+.|+++||++++.|++ ++||++||++|++++..|.++++
T Consensus 320 ~~~~~~~~~~~~~~~~~~~~~~~l~~l~vn~~~m~~~l~~s~~~~~ae~~~~~L~~-~ig~~~Ah~iv~~~~~~a~~~~~ 398 (448)
T d1re5a_ 320 AEWETLPDICCLVSGALRQAQVIAEGMEVDAARMRRNLDLTQGLVLAEAVSIVLAQ-RLGRDRAHHLLEQCCQRAVAEQR 398 (448)
T ss_dssp THHHHHHHHHHHHHHHHHHHHHHHHHCEECHHHHHHHHTTSTTGGGHHHHHHHHHH-HSCHHHHHHHHHHHHHHHHHTTC
T ss_pred hhhhhhhhhhHHHHHHHHhhhcccccCcccHHHHHHHHHhccCHHHHHHHHHHHhh-cCCHHHHHHHHHHHHHHHHHhCC
Confidence 37889999999999999999999999999999999999999999999999999998 79999999999999999999988
Q ss_pred cchhhhhhhH
Q psy14321 81 LTLSESFLTT 90 (124)
Q Consensus 81 ~~l~ea~l~~ 90 (124)
++.|++...
T Consensus 399 -~l~~~~~~~ 407 (448)
T d1re5a_ 399 -HLRAVLGDE 407 (448)
T ss_dssp -CHHHHHHTC
T ss_pred -CHHHHHHhh
Confidence 666775544
>d1tj7a_ a.127.1.1 (A:) Argininosuccinate lyase/delta-crystallin {Escherichia coli [TaxId: 562]}
Back Show information, alignment and structure
class: All alpha proteins
fold: L-aspartase-like
superfamily: L-aspartase-like
family: L-aspartase/fumarase
domain: Argininosuccinate lyase/delta-crystallin
species: Escherichia coli [TaxId: 562]
Probab=99.23 E-value=9.1e-12 Score=101.77 Aligned_cols=83 Identities=16% Similarity=0.085 Sum_probs=76.4
Q ss_pred ccchHhHHHHHHHHHHHHHHhhhhCCeeCHHHHHHHHHhhCCchHHHHHHHHHHHcCCCHHHHHHHHHHhcCccccCCcc
Q psy14321 2 KRLTLSESFLTTDCLLITLQNVLEGLVVYPKVIQRHIDQELPFMATENIIMAMVKAGGDRQVCHEKIRGALNPLFPHRRL 81 (124)
Q Consensus 2 Ew~~lPe~~~~~~~aL~~~~~ll~gL~V~~~rM~~Nl~~t~glI~SE~vm~aLa~~~lgR~~Ah~~V~~~a~~A~~~~~~ 81 (124)
+|..+|+++..+..++..+..++++|+||++||++|++ .|+++++.++..|+++|+||.+||++|++++++|.++|+
T Consensus 322 ~~~~l~~~~~~~~~~l~~~~~~i~~l~vn~erm~~~~~--~~~~~at~la~~Lv~kgi~freAh~~V~~~v~~A~~~g~- 398 (455)
T d1tj7a_ 322 DKEGLFDALDTWLDCLHMAALVLDGIQVKRPRCQEAAQ--QGYANATELADYLVAKGVPFREAHHIVGEAVVEAIRQGK- 398 (455)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHTTCEECHHHHHHHHT--STTTTHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHTC-
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhhhhhhcchhHHHHhh--cchhHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHhCC-
Confidence 46788999999999999999999999999999999974 799999999999988899999999999999999999998
Q ss_pred chhhhh
Q psy14321 82 TLSESF 87 (124)
Q Consensus 82 ~l~ea~ 87 (124)
++.|.+
T Consensus 399 ~l~el~ 404 (455)
T d1tj7a_ 399 PLEDLP 404 (455)
T ss_dssp CGGGSC
T ss_pred CHHHHh
Confidence 565753
>d1k62b_ a.127.1.1 (B:) Argininosuccinate lyase/delta-crystallin {Human (Homo sapiens) [TaxId: 9606]}
Back Show information, alignment and structure
class: All alpha proteins
fold: L-aspartase-like
superfamily: L-aspartase-like
family: L-aspartase/fumarase
domain: Argininosuccinate lyase/delta-crystallin
species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.19 E-value=8.9e-12 Score=102.01 Aligned_cols=81 Identities=16% Similarity=0.139 Sum_probs=74.3
Q ss_pred ccchHhHHHHHHHHHHHHHHhhhhCCeeCHHHHHHHHHhhCCchHHHHHHHHHHHcCCCHHHHHHHHHHhcCccccCCcc
Q psy14321 2 KRLTLSESFLTTDCLLITLQNVLEGLVVYPKVIQRHIDQELPFMATENIIMAMVKAGGDRQVCHEKIRGALNPLFPHRRL 81 (124)
Q Consensus 2 Ew~~lPe~~~~~~~aL~~~~~ll~gL~V~~~rM~~Nl~~t~glI~SE~vm~aLa~~~lgR~~Ah~~V~~~a~~A~~~~~~ 81 (124)
+|..+|+++..+..++..+..++++|+||++||++|++ |.++++.++..|+++|+||.+||++|.++++.|.++|.
T Consensus 323 ~~~~l~~~~~~~~~~l~~~~~vi~~l~vn~erm~~~l~---~~~~At~la~~Lv~~Gi~fr~AH~~V~~lv~~a~~~g~- 398 (459)
T d1k62b_ 323 DKEAVFEVSDTMSAVLQVATGVISTLQIHQENMGQALS---PDMLATDLAYYLVRKGMPFRQAHEASGKAVFMAETKGV- 398 (459)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHCEECHHHHHHTCC---GGGTHHHHHHHHHTTTCCHHHHHHHHHHHHHHHHHTTS-
T ss_pred cchhhhhhhHHHHhhhhhhhhccceeEechhhHHHHHh---hcchHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHhCC-
Confidence 57889999999999999999999999999999999985 34689999999999899999999999999999999998
Q ss_pred chhhh
Q psy14321 82 TLSES 86 (124)
Q Consensus 82 ~l~ea 86 (124)
++.|.
T Consensus 399 ~l~~l 403 (459)
T d1k62b_ 399 ALNQL 403 (459)
T ss_dssp CGGGS
T ss_pred CHHHc
Confidence 56564
>d1vdka_ a.127.1.1 (A:) Fumarase {Thermus thermophilus [TaxId: 274]}
Back Show information, alignment and structure
class: All alpha proteins
fold: L-aspartase-like
superfamily: L-aspartase-like
family: L-aspartase/fumarase
domain: Fumarase
species: Thermus thermophilus [TaxId: 274]
Probab=98.95 E-value=1.5e-10 Score=95.12 Aligned_cols=75 Identities=16% Similarity=0.146 Sum_probs=62.6
Q ss_pred ccchHhHHHHHHHHHHHHHHhhhhCCeeCHHHHHHHHHhhCCchHHHHHHHHHHHcCCCHHHHHHHHHHhcCccccCCcc
Q psy14321 2 KRLTLSESFLTTDCLLITLQNVLEGLVVYPKVIQRHIDQELPFMATENIIMAMVKAGGDRQVCHEKIRGALNPLFPHRRL 81 (124)
Q Consensus 2 Ew~~lPe~~~~~~~aL~~~~~ll~gL~V~~~rM~~Nl~~t~glI~SE~vm~aLa~~~lgR~~Ah~~V~~~a~~A~~~~~~ 81 (124)
+|..+|+++.++++++..+..+++||+||++||++|++.+.++ +.+|++ ++||++||++|+ +|.++++
T Consensus 363 ~~~~l~~~~~l~~~~~~~~~~~~~gl~vn~~rm~~~l~~s~~l------~taLa~-~ig~~~A~eiv~----~A~~~~~- 430 (460)
T d1vdka_ 363 AYSTLESINLLADAVASFDAHLAQGIEPNLERIEEYLQKNPML------ATALNK-AIGYDKAAEIVK----KALKEKK- 430 (460)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTGGGCEECHHHHHHHHTTCGGG------GHHHHH-HHCSHHHHTTTT----TSCC--C-
T ss_pred HHhhhhHHHHHHHHHHHHHHHHHccCEECHHHHHHHHHcChhH------HHHHhc-CCCHHHHHHHHH----HHHHhCC-
Confidence 6889999999999999999999999999999999999976554 457898 799999999776 4677787
Q ss_pred chhhhhh
Q psy14321 82 TLSESFL 88 (124)
Q Consensus 82 ~l~ea~l 88 (124)
++.|+++
T Consensus 431 ~l~e~~~ 437 (460)
T d1vdka_ 431 TLKQAAL 437 (460)
T ss_dssp CHHHHHH
T ss_pred CHHHHHH
Confidence 6667654
>d1tjva_ a.127.1.1 (A:) Argininosuccinate lyase/delta-crystallin {Domestic duck (Anas platyrhynchos), delta-crystallin [TaxId: 8839]}
Back Show information, alignment and structure
class: All alpha proteins
fold: L-aspartase-like
superfamily: L-aspartase-like
family: L-aspartase/fumarase
domain: Argininosuccinate lyase/delta-crystallin
species: Domestic duck (Anas platyrhynchos), delta-crystallin [TaxId: 8839]
Probab=98.94 E-value=5e-10 Score=90.92 Aligned_cols=81 Identities=14% Similarity=0.173 Sum_probs=72.5
Q ss_pred ccchHhHHHHHHHHHHHHHHhhhhCCeeCHHHHHHHHHhhCCchHHHHHHHHHHHcCCCHHHHHHHHHHhcCccccCCcc
Q psy14321 2 KRLTLSESFLTTDCLLITLQNVLEGLVVYPKVIQRHIDQELPFMATENIIMAMVKAGGDRQVCHEKIRGALNPLFPHRRL 81 (124)
Q Consensus 2 Ew~~lPe~~~~~~~aL~~~~~ll~gL~V~~~rM~~Nl~~t~glI~SE~vm~aLa~~~lgR~~Ah~~V~~~a~~A~~~~~~ 81 (124)
+|..+++++..+..++..+..+++++.||+++|++|+. |.++++.++..|+.+|+||.+||++|.++++.|.++|+
T Consensus 312 ~~~~l~~~~~~~~~~L~~~~~~l~~l~vn~e~m~~~l~---~~~~at~la~~Lv~kgipfr~Ah~~V~~~v~~A~~~g~- 387 (449)
T d1tjva_ 312 DKEAVFDVVDTLTAVLQVATGVISTLQISKENMEKALT---PEMLATDLALYLVRKGVPFRQAHTASGKAVHLAETKGI- 387 (449)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHCEECHHHHHHTCC---GGGGHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTS-
T ss_pred hhhhhhhHHHHHHHHHHHhhhccchhhcccccchhhhh---hhchHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHhCC-
Confidence 57788999999999999999999999999999999873 44567888888888899999999999999999999998
Q ss_pred chhhh
Q psy14321 82 TLSES 86 (124)
Q Consensus 82 ~l~ea 86 (124)
++.|.
T Consensus 388 ~l~el 392 (449)
T d1tjva_ 388 TINKL 392 (449)
T ss_dssp CGGGS
T ss_pred CHHHh
Confidence 66675
>d1j3ua_ a.127.1.1 (A:) L-aspartate ammonia lyase {Bacillus sp., ym55-1 [TaxId: 1409]}
Back Show information, alignment and structure
class: All alpha proteins
fold: L-aspartase-like
superfamily: L-aspartase-like
family: L-aspartase/fumarase
domain: L-aspartate ammonia lyase
species: Bacillus sp., ym55-1 [TaxId: 1409]
Probab=98.70 E-value=8.7e-09 Score=84.35 Aligned_cols=76 Identities=9% Similarity=0.124 Sum_probs=64.1
Q ss_pred ccchHhHHHHHHHHHHHHHHhhhhCCeeCHHHHHHHHHhhCCchHHHHHHHHHHHcCCCHHHHHHHHHHhcCccccCCcc
Q psy14321 2 KRLTLSESFLTTDCLLITLQNVLEGLVVYPKVIQRHIDQELPFMATENIIMAMVKAGGDRQVCHEKIRGALNPLFPHRRL 81 (124)
Q Consensus 2 Ew~~lPe~~~~~~~aL~~~~~ll~gL~V~~~rM~~Nl~~t~glI~SE~vm~aLa~~~lgR~~Ah~~V~~~a~~A~~~~~~ 81 (124)
+|..+|.++.+++.+...+..+++||+||++||++|++.+.|++. +|++ .+||+.||+++++ |.++++
T Consensus 362 ~~~~~~~~~~l~~~~~~~~~~~l~gl~vn~erm~~~l~~s~~l~t------aLa~-~ig~~~A~~i~~~----A~~~g~- 429 (462)
T d1j3ua_ 362 FFNLIQSISIMTNVFKSFTENCLKGIKANEERMKEYVEKSIGIIT------AINP-HVGYETAAKLARE----AYLTGE- 429 (462)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTTGGGCEECHHHHHHHHHTCTTGGG------GTGG-GSHHHHHHHHHHT----TTTSCC-
T ss_pred hhhhhhHHHHHHHHHHHHHHHHHccCEECHHHHHHHHHcCccHHH------HhhH-HHHHHHHHHHHHH----HHHhCC-
Confidence 467788888889999998999999999999999999999999875 4898 6999999999875 556666
Q ss_pred chhhhhhh
Q psy14321 82 TLSESFLT 89 (124)
Q Consensus 82 ~l~ea~l~ 89 (124)
++.|++..
T Consensus 430 ~l~e~~~~ 437 (462)
T d1j3ua_ 430 SIRELCIK 437 (462)
T ss_dssp CHHHHHHT
T ss_pred CHHHHHHH
Confidence 66676544
>d1fuoa_ a.127.1.1 (A:) Fumarase {Escherichia coli [TaxId: 562]}
Back Show information, alignment and structure
class: All alpha proteins
fold: L-aspartase-like
superfamily: L-aspartase-like
family: L-aspartase/fumarase
domain: Fumarase
species: Escherichia coli [TaxId: 562]
Probab=98.57 E-value=5.1e-08 Score=79.62 Aligned_cols=75 Identities=16% Similarity=0.063 Sum_probs=61.8
Q ss_pred ccchHhHHHHHHHHHHHHHHhhhhCCeeCHHHHHHHHHhhCCchHHHHHHHHHHHcCCCHHHHHHHHHHhcCccccCCcc
Q psy14321 2 KRLTLSESFLTTDCLLITLQNVLEGLVVYPKVIQRHIDQELPFMATENIIMAMVKAGGDRQVCHEKIRGALNPLFPHRRL 81 (124)
Q Consensus 2 Ew~~lPe~~~~~~~aL~~~~~ll~gL~V~~~rM~~Nl~~t~glI~SE~vm~aLa~~~lgR~~Ah~~V~~~a~~A~~~~~~ 81 (124)
+|..+|+++.+++++...+..+++||+||++||++|++.+ ++++ .+|++ ++||++||++++++. ++|+
T Consensus 363 ~~~~l~~~~~l~~~~~~~~~~~i~~l~vn~e~m~~~l~~s--~~l~----taLa~-~iG~~~A~eia~~a~----~~g~- 430 (456)
T d1fuoa_ 363 IHNFLQSVRLLADGMESFNKHCAVGIEPNRERINQLLNES--LMLV----TALNT-HIGYDKAAEIAKKAH----KEGL- 430 (456)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTGGGCEECHHHHHHHHTTC--STTH----HHHHT-TSCHHHHHHHHHHHH----HHTC-
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHccCEECHHHHHHHHHhc--hhHH----HHhcc-cccHHHHHHHHHHHH----HhCC-
Confidence 6888999999999999999999999999999999998754 4433 36898 799999999988754 4566
Q ss_pred chhhhhh
Q psy14321 82 TLSESFL 88 (124)
Q Consensus 82 ~l~ea~l 88 (124)
++.|+..
T Consensus 431 ~lre~~~ 437 (456)
T d1fuoa_ 431 TLKAAAL 437 (456)
T ss_dssp CHHHHHH
T ss_pred CHHHHHH
Confidence 6667643
>d1jswa_ a.127.1.1 (A:) L-aspartate ammonia lyase {Escherichia coli [TaxId: 562]}
Back Show information, alignment and structure
class: All alpha proteins
fold: L-aspartase-like
superfamily: L-aspartase-like
family: L-aspartase/fumarase
domain: L-aspartate ammonia lyase
species: Escherichia coli [TaxId: 562]
Probab=98.43 E-value=1.1e-07 Score=77.76 Aligned_cols=76 Identities=8% Similarity=0.043 Sum_probs=62.8
Q ss_pred ccchHhHHHHHHHHHHHHHHhhhhCCeeCHHHHHHHHHhhCCchHHHHHHHHHHHcCCCHHHHHHHHHHhcCccccCCcc
Q psy14321 2 KRLTLSESFLTTDCLLITLQNVLEGLVVYPKVIQRHIDQELPFMATENIIMAMVKAGGDRQVCHEKIRGALNPLFPHRRL 81 (124)
Q Consensus 2 Ew~~lPe~~~~~~~aL~~~~~ll~gL~V~~~rM~~Nl~~t~glI~SE~vm~aLa~~~lgR~~Ah~~V~~~a~~A~~~~~~ 81 (124)
+|..+|.+..++++++..+..+++||+||++||++|++.+.+++ .+|++ .+|++.|+++++ .|.++|+
T Consensus 369 ~~~ll~s~~~l~~~~~~~~~~~i~gl~vn~erm~~~l~~s~~La------taL~p-~iG~~~a~~iak----~A~~~g~- 436 (459)
T d1jswa_ 369 GQAMFESVHILTNACYNLLEKCINGITANKEVCEGYVYNSIGIV------TYLNP-FIGHHNGDIVGK----ICAETGK- 436 (459)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTGGGCEECHHHHHHHHTTCTTCG------GGTHH-HHCHHHHHHHHH----HHHTTCC-
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHccCEECHHHHHHHHHhhHHHH------HHhcc-hhhhHHHHHHHH----HHHHhCC-
Confidence 57788999999999999999999999999999999998776654 25788 599999988776 4567787
Q ss_pred chhhhhhh
Q psy14321 82 TLSESFLT 89 (124)
Q Consensus 82 ~l~ea~l~ 89 (124)
++.|+++.
T Consensus 437 ~l~e~~le 444 (459)
T d1jswa_ 437 SVREVVLE 444 (459)
T ss_dssp CHHHHHHH
T ss_pred cHHHHHHH
Confidence 67787544
>d1yfma_ a.127.1.1 (A:) Fumarase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Back Show information, alignment and structure
class: All alpha proteins
fold: L-aspartase-like
superfamily: L-aspartase-like
family: L-aspartase/fumarase
domain: Fumarase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=98.42 E-value=1.4e-07 Score=77.32 Aligned_cols=76 Identities=20% Similarity=0.122 Sum_probs=62.7
Q ss_pred ccchHhHHHHHHHHHHHHHHhhhhCCeeCHHHHHHHHHhhCCchHHHHHHHHHHHcCCCHHHHHHHHHHhcCccccCCcc
Q psy14321 2 KRLTLSESFLTTDCLLITLQNVLEGLVVYPKVIQRHIDQELPFMATENIIMAMVKAGGDRQVCHEKIRGALNPLFPHRRL 81 (124)
Q Consensus 2 Ew~~lPe~~~~~~~aL~~~~~ll~gL~V~~~rM~~Nl~~t~glI~SE~vm~aLa~~~lgR~~Ah~~V~~~a~~A~~~~~~ 81 (124)
+|..+|.++.+++++...+..+++||+||++||++|++.+.+++ .+|++ .+|++.||++++++. ++|+
T Consensus 365 ~~~~l~s~~~l~~~~~~~~~~~i~gl~vn~erm~~~l~~s~~l~------taL~~-~iGy~~A~~ia~~a~----~~g~- 432 (459)
T d1yfma_ 365 IANLLNSIRLITDAAYSFRVHCVEGIKANEPRIHELLTKSLMLV------TALNP-KIGYDAASKVAKNAH----KKGI- 432 (459)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTGGGCEECHHHHHHHHHHCSGGG------TTTGG-GTCHHHHHHHHHHHH----HHTC-
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhccCEECHHHHHHHHHhCccHH------HHhcc-hhhHHHHHHHHHHHH----HhCC-
Confidence 67889999999999999999999999999999999998665432 36898 699999999988765 4566
Q ss_pred chhhhhhh
Q psy14321 82 TLSESFLT 89 (124)
Q Consensus 82 ~l~ea~l~ 89 (124)
++.|+++.
T Consensus 433 ~lre~~~~ 440 (459)
T d1yfma_ 433 TLKESALE 440 (459)
T ss_dssp CHHHHHHH
T ss_pred CHHHHHHH
Confidence 67676443
>d1f1oa_ a.127.1.1 (A:) Adenylosuccinate lyase {Bacillus subtilis [TaxId: 1423]}
Back Show information, alignment and structure
class: All alpha proteins
fold: L-aspartase-like
superfamily: L-aspartase-like
family: L-aspartase/fumarase
domain: Adenylosuccinate lyase
species: Bacillus subtilis [TaxId: 1423]
Probab=90.55 E-value=0.067 Score=41.67 Aligned_cols=37 Identities=24% Similarity=0.615 Sum_probs=33.6
Q ss_pred CccchhhhhhhHHHHHHHHHhhhcCCccCHHHHhh-hh
Q psy14321 79 RRLTLSESFLTTDCLLITLQNVLKGLVVYPKVIQR-LN 115 (124)
Q Consensus 79 ~~~~l~ea~l~~~~~l~~~~~v~~~l~v~~~~m~~-~~ 115 (124)
.+..+++++...+.++..+.++++|++||+++|++ +.
T Consensus 301 ~~~~l~~~~~~~~~~l~~~~~~l~~l~vn~e~m~~nl~ 338 (408)
T d1f1oa_ 301 ERIILPDATIALNYMLNRFSNIVKNLTVFPENMKRNMD 338 (408)
T ss_pred HhhcchhHHHHHHHHHHHHHHHhhCCeeCHHHHHHHHH
Confidence 45678999999999999999999999999999998 64
>d1dofa_ a.127.1.1 (A:) Adenylosuccinate lyase {Archaeon Pyrobaculum aerophilum [TaxId: 13773]}
Back Show information, alignment and structure
class: All alpha proteins
fold: L-aspartase-like
superfamily: L-aspartase-like
family: L-aspartase/fumarase
domain: Adenylosuccinate lyase
species: Archaeon Pyrobaculum aerophilum [TaxId: 13773]
Probab=89.47 E-value=0.074 Score=41.23 Aligned_cols=37 Identities=27% Similarity=0.389 Sum_probs=32.9
Q ss_pred ccchhhhhhhHHHHHHHHHhhhcCCccCHHHHhh-hhh
Q psy14321 80 RLTLSESFLTTDCLLITLQNVLKGLVVYPKVIQR-LNT 116 (124)
Q Consensus 80 ~~~l~ea~l~~~~~l~~~~~v~~~l~v~~~~m~~-~~~ 116 (124)
+..+++++...+.++..+.++++|+.||+++|++ ++.
T Consensus 309 ~~~l~~~~~~~~~~l~~~~~~l~~l~vn~erm~~~l~~ 346 (402)
T d1dofa_ 309 RVWIPEALLALDEILTSALRVLKNVYIDEERITENLQK 346 (402)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHCEECHHHHHHHHHH
T ss_pred hhccchhHHHHHHHHHHHHHHHccCEECHHHHHHHHHh
Confidence 3468899999999999999999999999999998 643
>d1c3ca_ a.127.1.1 (A:) Adenylosuccinate lyase {Thermotoga maritima [TaxId: 2336]}
Back Show information, alignment and structure
class: All alpha proteins
fold: L-aspartase-like
superfamily: L-aspartase-like
family: L-aspartase/fumarase
domain: Adenylosuccinate lyase
species: Thermotoga maritima [TaxId: 2336]
Probab=88.07 E-value=0.1 Score=40.66 Aligned_cols=38 Identities=16% Similarity=0.350 Sum_probs=32.9
Q ss_pred CccchhhhhhhHHHHHHHHHhhhcCCccCHHHHhh-hhh
Q psy14321 79 RRLTLSESFLTTDCLLITLQNVLKGLVVYPKVIQR-LNT 116 (124)
Q Consensus 79 ~~~~l~ea~l~~~~~l~~~~~v~~~l~v~~~~m~~-~~~ 116 (124)
.+..+++.+.....++..+.++++|++||+++|++ ++.
T Consensus 308 ~~~~~~~~~~~~~~~l~~~~~~i~~L~vn~erm~~nl~~ 346 (429)
T d1c3ca_ 308 ERYVFPDATQTLYYMIVTATNVVRNMKVNEERMKKNIDL 346 (429)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHCEECHHHHHHHHTT
T ss_pred cccccchhHHHHHhHhhHHHHHhhccccchHHHHHHHHh
Confidence 34567788888999999999999999999999999 653
>d1q5na_ a.127.1.1 (A:) 3-carboxy-cis,cis-muconate cycloisomerase (CMLE) {Acinetobacter calcoaceticus [TaxId: 471]}
Back Show information, alignment and structure
class: All alpha proteins
fold: L-aspartase-like
superfamily: L-aspartase-like
family: L-aspartase/fumarase
domain: 3-carboxy-cis,cis-muconate cycloisomerase (CMLE)
species: Acinetobacter calcoaceticus [TaxId: 471]
Probab=87.41 E-value=0.12 Score=40.27 Aligned_cols=37 Identities=30% Similarity=0.374 Sum_probs=32.8
Q ss_pred ccchhhhhhhHHHHHHHHHhhhcCCccCHHHHhh-hhh
Q psy14321 80 RLTLSESFLTTDCLLITLQNVLKGLVVYPKVIQR-LNT 116 (124)
Q Consensus 80 ~~~l~ea~l~~~~~l~~~~~v~~~l~v~~~~m~~-~~~ 116 (124)
+..+++++...+..+..+.++++++.||+++|++ ++.
T Consensus 323 ~~~l~~~~~~~~~~l~~~~~~l~~l~vn~erm~~nle~ 360 (444)
T d1q5na_ 323 WLSLPEIFQLTAGALERTLDVLKGMEVNAENMHQNIEC 360 (444)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHCEECHHHHHHHHHT
T ss_pred hhhhcccchhhhhHHHHHHhHHHHhcchhhHHHHHHHh
Confidence 4567889999999999999999999999999999 653
>d1vdka_ a.127.1.1 (A:) Fumarase {Thermus thermophilus [TaxId: 274]}
Back Show information, alignment and structure
class: All alpha proteins
fold: L-aspartase-like
superfamily: L-aspartase-like
family: L-aspartase/fumarase
domain: Fumarase
species: Thermus thermophilus [TaxId: 274]
Probab=82.27 E-value=0.41 Score=37.76 Aligned_cols=38 Identities=18% Similarity=0.102 Sum_probs=32.7
Q ss_pred ccchhhhhhhHHHHHHHHHhhhcCCccCHHHHhh-hhhh
Q psy14321 80 RLTLSESFLTTDCLLITLQNVLKGLVVYPKVIQR-LNTL 117 (124)
Q Consensus 80 ~~~l~ea~l~~~~~l~~~~~v~~~l~v~~~~m~~-~~~~ 117 (124)
+..+++.++..+.++....++++|+.||+++|++ +...
T Consensus 364 ~~~l~~~~~l~~~~~~~~~~~~~gl~vn~~rm~~~l~~s 402 (460)
T d1vdka_ 364 YSTLESINLLADAVASFDAHLAQGIEPNLERIEEYLQKN 402 (460)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTGGGCEECHHHHHHHHTTC
T ss_pred HhhhhHHHHHHHHHHHHHHHHHccCEECHHHHHHHHHcC
Confidence 4567788889999999999999999999999999 6543
>d1k62b_ a.127.1.1 (B:) Argininosuccinate lyase/delta-crystallin {Human (Homo sapiens) [TaxId: 9606]}
Back Show information, alignment and structure
class: All alpha proteins
fold: L-aspartase-like
superfamily: L-aspartase-like
family: L-aspartase/fumarase
domain: Argininosuccinate lyase/delta-crystallin
species: Human (Homo sapiens) [TaxId: 9606]
Probab=82.09 E-value=0.24 Score=38.87 Aligned_cols=37 Identities=16% Similarity=0.149 Sum_probs=32.5
Q ss_pred CccchhhhhhhHHHHHHHHHhhhcCCccCHHHHhh-hh
Q psy14321 79 RRLTLSESFLTTDCLLITLQNVLKGLVVYPKVIQR-LN 115 (124)
Q Consensus 79 ~~~~l~ea~l~~~~~l~~~~~v~~~l~v~~~~m~~-~~ 115 (124)
.+..+++++......+..+..+++|+.||+|+|++ ++
T Consensus 323 ~~~~l~~~~~~~~~~l~~~~~vi~~l~vn~erm~~~l~ 360 (459)
T d1k62b_ 323 DKEAVFEVSDTMSAVLQVATGVISTLQIHQENMGQALS 360 (459)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHCEECHHHHHHTCC
T ss_pred cchhhhhhhHHHHhhhhhhhhccceeEechhhHHHHHh
Confidence 45567788888899999999999999999999998 65
>d1jswa_ a.127.1.1 (A:) L-aspartate ammonia lyase {Escherichia coli [TaxId: 562]}
Back Show information, alignment and structure
class: All alpha proteins
fold: L-aspartase-like
superfamily: L-aspartase-like
family: L-aspartase/fumarase
domain: L-aspartate ammonia lyase
species: Escherichia coli [TaxId: 562]
Probab=81.24 E-value=0.54 Score=37.12 Aligned_cols=39 Identities=10% Similarity=0.169 Sum_probs=31.1
Q ss_pred chhhhhhhHHHHHHHHHhhhcCCccCHHHHhh-hhhhhhh
Q psy14321 82 TLSESFLTTDCLLITLQNVLKGLVVYPKVIQR-LNTLRVL 120 (124)
Q Consensus 82 ~l~ea~l~~~~~l~~~~~v~~~l~v~~~~m~~-~~~~~~~ 120 (124)
.+++..+..+.++..+.++++|+.||+|+|++ +..-..+
T Consensus 372 ll~s~~~l~~~~~~~~~~~i~gl~vn~erm~~~l~~s~~L 411 (459)
T d1jswa_ 372 MFESVHILTNACYNLLEKCINGITANKEVCEGYVYNSIGI 411 (459)
T ss_dssp HHHHHHHHHHHHHHHHHHTGGGCEECHHHHHHHHTTCTTC
T ss_pred HHHHHHHHHHHHHHHHHHHHccCEECHHHHHHHHHhhHHH
Confidence 44556667788889999999999999999999 7654433
>d1j3ua_ a.127.1.1 (A:) L-aspartate ammonia lyase {Bacillus sp., ym55-1 [TaxId: 1409]}
Back Show information, alignment and structure
class: All alpha proteins
fold: L-aspartase-like
superfamily: L-aspartase-like
family: L-aspartase/fumarase
domain: L-aspartate ammonia lyase
species: Bacillus sp., ym55-1 [TaxId: 1409]
Probab=81.10 E-value=0.43 Score=37.61 Aligned_cols=40 Identities=15% Similarity=0.192 Sum_probs=30.3
Q ss_pred chhhhhhhHHHHHHHHHhhhcCCccCHHHHhh-hhhhhhhh
Q psy14321 82 TLSESFLTTDCLLITLQNVLKGLVVYPKVIQR-LNTLRVLI 121 (124)
Q Consensus 82 ~l~ea~l~~~~~l~~~~~v~~~l~v~~~~m~~-~~~~~~~~ 121 (124)
.++...+..+.+..+..++++|+.||+++|++ ++....++
T Consensus 365 ~~~~~~~l~~~~~~~~~~~l~gl~vn~erm~~~l~~s~~l~ 405 (462)
T d1j3ua_ 365 LIQSISIMTNVFKSFTENCLKGIKANEERMKEYVEKSIGII 405 (462)
T ss_dssp HHHHHHHHHHHHHHHHHTTGGGCEECHHHHHHHHHTCTTGG
T ss_pred hhhHHHHHHHHHHHHHHHHHccCEECHHHHHHHHHcCccHH
Confidence 44455566777777788999999999999999 76544443
