Psyllid ID: psy14331

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-----
Protein Sequence
MRGIWDRHAMSWTIMFNEDIEKIVRDIEAEEKRKNKVIEKVVPEPTRRANFSFLAHPDKDQLILFGGEFYDGQKFVFGSPKALDHLILMNLFVSAPGAPPPRCSHQMVALSADKGQLWMFGGEFSSASESQFHHYKDLWVFRMGEKKWEKIVCKDTPPSRSGHRMIALKKHLVVFGGFHDNLREAKYYNDVHIFDLETYAWKKIEPLGAGPAPRSGCQMAATPDGKILISGGYSKQSVKKDVDKGIVHTDTFLLTPDSKTLRSCL
Secondary Structure (PSIPRED)
ccccccccccEEEEEcHHHHHHHHHHHHHcEEEEEEEEccccccccccccccEEEEccccEEEEEcccccccccEEEccEEEEEccccEEEEccccccccccccccEEEEcccccEEEEEccccccccccccEEEcEEEEEEcccccEEEEEccccccccccEEEEEEccEEEEEccccccccccEEEcEEEEEEccccEEEEEEccccccccccccEEEEEcccEEEEEccccccccccccccEEEEccEEEEEcccccccccc
Secondary Structure Prediction (SSPRO)
cccEEccEEEEEEccccccHHHHHHHHHHHcccccEEEEccccccccccccEEEEEccccEEEEEEcEcccccEEEEccEEEEEccccEEEEEEcccccccccccEEEEEEccccEEEEEEccccccccccEEEcccEEEEEccccEEEEEccccccccccccEEEEEccEEEEEEcEEccccccEEEccEEEEEccccEEEEccccccccccccccEEEEEcccEEEEEEccccccccccccEEEEcccEEEEccccccccccc
Coil and Loop (DISEMBL)
mrgiwdrhAMSWTIMFNEDIEKIVRDIEAEEKRKNKVIekvvpeptrranfsflahpdkdqlilfggefydgqkfvfgspkaldHLILMNLfvsapgappprcshqMVALSadkgqlwmfggefssasesqfhhyKDLWVfrmgekkwekivckdtppsrsghrMIALKKHLVVFGGFhdnlreakyyndvhifdLETYawkkieplgagpaprsgcqmaatpdgkilisggyskqsvkkdvdkgivhtdtflltpdsktlrscl
Flexible Loop (DISEMBL)
mrgiwdrhamswtimfneDIEKIVRDIEAeekrknkviekvvpeptrranFSFLAHPDKDQLILFGGEFYDGQKFVFGSPKALDHLILMNLFVSAPGAPPPRCSHQMVALSADKGQLWMFGGEFSSASESQFHHYKDLWVFRMGEKKWEKIVCkdtppsrsghrMIALKKHLVVFGGFHDNLREAKYYNDVHIFDLETYAWKKIEPLGAGPAPRSGCQMAATPDGKILISGGYSKQSVKKDVDKGivhtdtflltpdsktlrscl
Low Complexity Region (SEG)
MRGIWDRHAMSWTIMFNEDIEKIVRDIEAEEKRKNKVIEKVVPEPTRRANFSFLAHPDKDQLILFGGEFYDGQKFVFGSPKALDHLILMNLFVSAPGAPPPRCSHQMVALSADKGQLWMFGGEFSSASESQFHHYKDLWVFRMGEKKWEKIVCKDTPPSRSGHRMIALKKHLVVFGGFHDNLREAKYYNDVHIFDLETYAWKKIEPLGAGPAPRSGCQMAATPDGKILISGGYSKQSVKKDVDKGIVHTDTFLLTPDSKTLRSCL
Disordered region (IsUnstruct)
***IWDRHAMSWTIMFNEDIEKIVRDIEA*******VIEKVVP**TRRANFSFLAHPDKDQLILFGGEFYDGQKFVFGSPKALDHLILMNLFVSAPG*****CSHQMVALSADKGQLWMFGGEFSSASESQFHHYKDLWVFRMGEKKWEKIVCKDT*****GHRMIALKKHLVVFGGFHDNLREAKYYNDVHIFDLETYAWKKIEPLGA***************GKILISGGYS***VKKDVDKGIVHTDTFLL***********
Disordered Region (DISOPRED)
*****D*HAMSWTIMFNEDIEKIVRDIEAEEKRKNKVIEKVVPEPTRRANFSFLAHPDKDQLILFGGEFYDGQKFVFGSPKALDHLILMNLFVSA**APPPRCSHQMVALSADKGQLWMFGGEFSSASESQFHHYKDLWVFRMGEKKWEKIVCKDTPPSRSGHRMIALKKHLVVFGGFHDNLREAKYYNDVHIFDLETYAWKKIEPLGAGPAPRSGCQMAATPDGKILISGGYSKQSVKKDVDKGIVHTDTFLLTPDSKTLRSCL
Disordered Region (DISEMBL)
MRGIWDRHAMSWTIMFNEDIEKIVRDIEAEEKRKNKVIEKVVPEPTRRANFSFLAHPDKDQLILFGGEFYDGQKFVFGSPKALDHLILMNLFVSAPGAPPPRCSHQMVALSADKGQLWMFGGEFSSASESQFHHYKDLWVFRMGEKKWEKIVCKDTPPSRSGHRMIALKKHLVVFGGFHDNLREAKYYNDVHIFDLETYAWKKIEPLGAGPAPRSGCQMAATPDGKILISGGYSKQSVKKDVDKGIVHTDTFLLTPDSKTLRSCL
Disordered Region (DISPRO)
MRGIWDRHAMSWTIMFNEDIEKIVRDIEAEEKRKNKVIEKVVPEPTRRANFSFLAHPDKDQLILFGGEFYDGQKFVFGSPKALDHLILMNLFVSAPGAPPPRCSHQMVALSADKGQLWMFGGEFSSASESQFHHYKDLWVFRMGEKKWEKIVCKDTPPSRSGHRMIALKKHLVVFGGFHDNLREAKYYNDVHIFDLETYAWKKIEPLGAGPAPRSGCQMAATPDGKILISGGYSKQSVKKDVDKGIVHTDTFLLTPDSKTL*SCL
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MRGIWDRHAMSWTIMFNEDxxxxxxxxxxxxxxxxxxxxxVVPEPTRRANFSFLAHPDKDQLILFGGEFYDGQKFVFGSPKALDHLILMNLFVSAPGAPPPRCSHQMVALSADKGQLWMFGGEFSSASESQFHHYKDLWVFRMGEKKWEKIVCKDTPPSRSGHRMIALKKHLVVFGGFHDNLREAKYYNDVHIFDLETYAWKKIEPLGAGPAPRSGCQMAATPDGKILISGGYSKQSVKKDVDKGIVHTDTFLLTPDSKTLRSCL
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	265	2.2.26 [Sep-21-2011]
Q5R8W1	522	Kelch domain-containing p	yes	N/A	0.883	0.448	0.477	5e-69
Q921I2	584	Kelch domain-containing p	yes	N/A	0.901	0.409	0.508	1e-68
Q8TBB5	520	Kelch domain-containing p	yes	N/A	0.905	0.461	0.481	4e-68
Q08979	651	Kelch repeat-containing p	yes	N/A	0.901	0.367	0.343	6e-25
Q7M3S9	943	RING finger protein B OS=	yes	N/A	0.471	0.132	0.318	9e-13
P80197	737	Actin-fragmin kinase OS=P	N/A	N/A	0.524	0.188	0.300	4e-12
Q39610	4499	Dynein alpha chain, flage	N/A	N/A	0.505	0.029	0.331	1e-11
O14248	1125	Tip elongation aberrant p	yes	N/A	0.509	0.12	0.275	7e-10
Q5R4Q7	840	Leucine-zipper-like trans	no	N/A	0.494	0.155	0.277	9e-10
Q7Z6M1	372	Rab9 effector protein wit	no	N/A	0.656	0.467	0.303	1e-09

>sp|Q5R8W1|KLDC4_PONAB Kelch domain-containing protein 4 OS=Pongo abelii GN=KLHDC4 PE=2 SV=1

 Score =  260 bits (665), Expect = 5e-69,   Method: Compositional matrix adjust.
 Identities = 118/247 (47%), Positives = 165/247 (66%), Gaps = 13/247 (5%)

Query: 18  EDIEKIVRDIEAEEKRKNKVIEKVVPEPTRRANFSFLAHPDKDQLILFGGEFYDGQK-FV 76
           ED+E ++   +  + ++ + +E   P P+ R N S   HP+KD+LILFGGE+++GQK F+
Sbjct: 34  EDLEALIAHFQTLDAKRTQTVEAPCPPPSPRLNASLSVHPEKDELILFGGEYFNGQKTFL 93

Query: 77  FGSPKALDHLILMNLF------VSAPGAPPPRCSHQMVALSADKGQLWMFGGEFSSASES 130
           +      + L + N+       V  P  PP RC+HQ V +    GQLW+FGGEF+S +  
Sbjct: 94  Y------NELYVYNIRKDTWTKVDIPSPPPRRCAHQAVVVPQGGGQLWVFGGEFASPNGE 147

Query: 131 QFHHYKDLWVFRMGEKKWEKIVCKDTPPSRSGHRMIALKKHLVVFGGFHDNLREAKYYND 190
           QF+HYKDLWV  +  K WE++    +P  RSGHRM+A K+ L++FGGFH++ R+  YYND
Sbjct: 148 QFYHYKDLWVLHLATKTWEQVKSTGSPSGRSGHRMVAWKRQLILFGGFHESTRDYIYYND 207

Query: 191 VHIFDLETYAWKKIEPLGAGPAPRSGCQMAATPDGKILISGGYSKQSVKKDVDKGIVHTD 250
           V+ F+L+T+ W K+ P G GP PRSGCQM+ TP G I+I GGYSKQ VKKDVD+G  H+D
Sbjct: 208 VYTFNLDTFTWSKLSPSGTGPTPRSGCQMSVTPQGGIIIYGGYSKQRVKKDVDRGTRHSD 267

Query: 251 TFLLTPD 257
            FLL P+
Sbjct: 268 MFLLKPE 274

Pongo abelii (taxid: 9601)

>sp|Q921I2|KLDC4_MOUSE Kelch domain-containing protein 4 OS=Mus musculus GN=Klhdc4 PE=1 SV=2

 Score =  259 bits (662), Expect = 1e-68,   Method: Compositional matrix adjust.
 Identities = 123/242 (50%), Positives = 160/242 (66%), Gaps = 3/242 (1%)

Query: 17  NEDIEKIVRDIEAEEKRKNKVIEKVVPEPTRRANFSFLAHPDKDQLILFGGEFYDGQKFV 76
            ED+E ++   +  + +K +V E   P P+ R N S  AHP+KD+LILFGGE+++GQK  
Sbjct: 33  EEDLEALIAHFQTLDAKKTQVTETPCPPPSPRLNASLSAHPEKDELILFGGEYFNGQK-T 91

Query: 77  FGSPKALDHLILMNLF--VSAPGAPPPRCSHQMVALSADKGQLWMFGGEFSSASESQFHH 134
           F   +   + I  + +  V  PG PP RC+HQ V +    GQLW+FGGEF+S    QF+H
Sbjct: 92  FMYNELYIYSIRKDTWTKVDIPGPPPRRCAHQAVVVPQGGGQLWVFGGEFASPDGEQFYH 151

Query: 135 YKDLWVFRMGEKKWEKIVCKDTPPSRSGHRMIALKKHLVVFGGFHDNLREAKYYNDVHIF 194
           YKDLWV  +  K WE+I     P  RSGHRM+A K+ L++FGGFH++ R+  YY+DV+ F
Sbjct: 152 YKDLWVLHLATKTWEQIRSTGGPSGRSGHRMVAWKRQLILFGGFHESARDYIYYSDVYTF 211

Query: 195 DLETYAWKKIEPLGAGPAPRSGCQMAATPDGKILISGGYSKQSVKKDVDKGIVHTDTFLL 254
            L+T+ W K+ P GAGP PRSGC MA TP G I I GGYSKQ VKKDVDKG  H+D FLL
Sbjct: 212 SLDTFQWSKLSPSGAGPTPRSGCLMAVTPQGSIAIYGGYSKQRVKKDVDKGTQHSDMFLL 271

Query: 255 TP 256
            P
Sbjct: 272 KP 273

Mus musculus (taxid: 10090)

>sp|Q8TBB5|KLDC4_HUMAN Kelch domain-containing protein 4 OS=Homo sapiens GN=KLHDC4 PE=1 SV=1

 Score =  258 bits (658), Expect = 4e-68,   Method: Compositional matrix adjust.
 Identities = 116/241 (48%), Positives = 160/241 (66%), Gaps = 1/241 (0%)

Query: 18  EDIEKIVRDIEAEEKRKNKVIEKVVPEPTRRANFSFLAHPDKDQLILFGGEFYDGQK-FV 76
           ED+E ++   +  + ++ + +E   P P+ R N S   HP+KD+LILFGGE+++GQK F+
Sbjct: 34  EDLEALIAHFQTLDAKRTQTVELPCPPPSPRLNASLSVHPEKDELILFGGEYFNGQKTFL 93

Query: 77  FGSPKALDHLILMNLFVSAPGAPPPRCSHQMVALSADKGQLWMFGGEFSSASESQFHHYK 136
           +      +        V  P  PP RC+HQ V +    GQLW+FGGEF+S +  QF+HYK
Sbjct: 94  YNELYVYNTRKDTWTKVDIPSPPPRRCAHQAVVVPQGGGQLWVFGGEFASPNGEQFYHYK 153

Query: 137 DLWVFRMGEKKWEKIVCKDTPPSRSGHRMIALKKHLVVFGGFHDNLREAKYYNDVHIFDL 196
           DLWV  +  K WE++     P  RSGHRM+A K+ L++FGGFH++ R+  YYNDV+ F+L
Sbjct: 154 DLWVLHLATKTWEQVKSTGGPSGRSGHRMVAWKRQLILFGGFHESTRDYIYYNDVYAFNL 213

Query: 197 ETYAWKKIEPLGAGPAPRSGCQMAATPDGKILISGGYSKQSVKKDVDKGIVHTDTFLLTP 256
           +T+ W K+ P G GP PRSGCQM+ TP G I++ GGYSKQ VKKDVDKG  H+D FLL P
Sbjct: 214 DTFTWSKLSPSGTGPTPRSGCQMSVTPQGGIVVYGGYSKQRVKKDVDKGTRHSDMFLLKP 273

Query: 257 D 257
           +
Sbjct: 274 E 274

Homo sapiens (taxid: 9606)

>sp|Q08979|KEL3_YEAST Kelch repeat-containing protein 3 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=KEL3 PE=1 SV=1

 Score =  114 bits (286), Expect = 6e-25,   Method: Compositional matrix adjust.
 Identities = 88/256 (34%), Positives = 134/256 (52%), Gaps = 17/256 (6%)

Query: 17  NEDIEKIVRDIEAEEKRKNKVIEKVVPEPTRRANFSFLAHP--DKDQLILFGGEFYDGQ- 73
           ++D+++I+     ++     V    V +P+ R +    A+P  +K +L +FGGEF D + 
Sbjct: 48  DQDLDEILSSFSKKQIELEHVDITSVEKPSCRTHPLMFANPQHNKHELFIFGGEFTDPET 107

Query: 74  KFVFGSPKALDHLILMNLF--VSAPGAPPPRCSHQMVALSADKGQLWMFGGEFSSASESQ 131
           K          + I  N +    +  AP PR S  +    +  G   + GGEFSS  +S+
Sbjct: 108 KLTHFYNDLYSYSIKNNSWKKYVSQNAPLPRSSAAVAVHPS--GIALLHGGEFSSPKQSK 165

Query: 132 FHHYKDLWVFRMGEKKWEKIVC--KDTPPS-RSGHRMIALKKHLVVFGGFHD-NLREAKY 187
           F+HY D W+F   E+K+ K+    +D+ PS RSGHR+IA K + ++FGGF D    +  Y
Sbjct: 166 FYHYSDTWLFDCVERKFTKLEFGGRDSSPSARSGHRIIAWKNYFILFGGFRDLGNGQTSY 225

Query: 188 YNDVHIFDLETYAWKKIEPLGAGPAPRSGCQMAATPDGKILISGGYSKQSVK--KDVDKG 245
            ND+  FD+ TY W K+E   + P  RSG     T +  IL+ GGY K   K  K++ KG
Sbjct: 226 LNDLWCFDISTYKWTKLE-TNSKPDARSGHCFIPTDNSAILM-GGYCKIIAKNNKNLMKG 283

Query: 246 IVHTDTFL--LTPDSK 259
            +  D +   LTPD K
Sbjct: 284 KILNDAWKLNLTPDPK 299

Saccharomyces cerevisiae (strain ATCC 204508 / S288c) (taxid: 559292)

>sp|Q7M3S9|RNGB_DICDI RING finger protein B OS=Dictyostelium discoideum GN=rngB PE=2 SV=2

 Score = 74.3 bits (181), Expect = 9e-13,   Method: Composition-based stats.
 Identities = 44/138 (31%), Positives = 67/138 (48%), Gaps = 13/138 (9%)

Query: 102 RCSHQMVALSADKGQLWMFGGEFSSASESQFHHYKDLWVFRMGEKKWEKIVCKDTPPS-R 160
           R  H  V     +  L +FGG  +  S+    +Y  + +F +   +W + VC    PS R
Sbjct: 128 RAGHTAVVY---RQNLVVFGGHNNHKSK----YYNSVLLFSLESNEWRQQVCGGVIPSAR 180

Query: 161 SGHRMIALKKH-LVVFGGFHDNLREAKYYNDVHIFDLETYAWKKIEPLGAGPAPRSGCQM 219
           + H    +  + + +FGG+       KYYND++  DLET+ WKK+E  G  P PRSG   
Sbjct: 181 ATHSTFQVNNNKMFIFGGYDGK----KYYNDIYYLDLETWIWKKVEAKGTPPKPRSGHSA 236

Query: 220 AATPDGKILISGGYSKQS 237
               + K++I GG    S
Sbjct: 237 TMIQNNKLMIFGGCGSDS 254

Dictyostelium discoideum (taxid: 44689)

>sp|P80197|AFK_PHYPO Actin-fragmin kinase OS=Physarum polycephalum PE=1 SV=2

 Score = 72.0 bits (175), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 49/163 (30%), Positives = 75/163 (46%), Gaps = 24/163 (14%)

Query: 67  GEFYDGQKFVFGS----PKALDHLIL------MNLFVSAPGAPPPRCSHQMVALSADKGQ 116
           G  Y+G+ +VFG       + D  +        ++ V+   AP PRC H         G+
Sbjct: 425 GVLYEGKLYVFGGVCIKTASNDFYVFDFAKKKWSIVVAQGEAPSPRCGHSATVYG---GK 481

Query: 117 LWMFGGEFSSASESQFHHYKDLWVFRMGEKKWEKIV-CKDTP-PS-RSGHRMIALKKHLV 173
           +W+FGG       +    Y DL+ F   +  WEKI   KD P PS R  H    +   L 
Sbjct: 482 MWIFGGH-----NNNKQPYSDLYTFDFAKSTWEKIEPTKDGPWPSPRYHHSATLVGASLY 536

Query: 174 VFGGFHDNLREAKYYNDVHIFDLETYAWKKIEPLGAGPAPRSG 216
           +FGG      ++KY+NDV+++  +   W+ +   G  P PR+G
Sbjct: 537 IFGGAE---HKSKYHNDVYVYKFDANQWELLNATGETPEPRAG 576

Has a role in the regulation of microfilament formation. Phosphorylates the actin-fragmin complex on threonine residues, in vitro.

Physarum polycephalum (taxid: 5791)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

>sp|Q39610|DYHA_CHLRE Dynein alpha chain, flagellar outer arm OS=Chlamydomonas reinhardtii GN=ODA11 PE=3 SV=2

 Score = 70.9 bits (172), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 51/154 (33%), Positives = 75/154 (48%), Gaps = 20/154 (12%)

Query: 89  MNLFVSAPGA----PPPRCSHQMVALSADKGQLWMFGGEFSSASESQFHHYKDLWVFRMG 144
           M++F   P A    P PR  H    L     +  +FGG      + +   + DL+     
Sbjct: 1   MSIFWEVPNAQGEAPCPRSGHSFTVLGE---RFVLFGG--CGRKDGKAAAFNDLYELDTS 55

Query: 145 ---EKKWEKIVCKDTPPSRSGHRMIALK-KHLVVFGGFHDNLREAKYYNDVHIFDLETYA 200
              E KW+++V  + PP R+ H  IAL  K L+VFGG +  +R    YNDV +F+ +  +
Sbjct: 56  DPDEYKWKELVVANAPPPRARHAAIALDDKRLLVFGGLNKRIR----YNDVWLFNYDDKS 111

Query: 201 WKKIEPLGAGPAPRSGCQMAATPDG-KILISGGY 233
           W  +E  GA P PR+     AT  G ++ I GGY
Sbjct: 112 WTCMEVEGAAPEPRA--HFTATRFGSRVFIFGGY 143

Force generating protein of eukaryotic cilia and flagella. Produces force towards the minus ends of microtubules. Dynein has ATPase activity; the force-producing power stroke is thought to occur on release of ADP.

Chlamydomonas reinhardtii (taxid: 3055)

>sp|O14248|TEA3_SCHPO Tip elongation aberrant protein 3 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=tea3 PE=1 SV=1

 Score = 64.7 bits (156), Expect = 7e-10,   Method: Composition-based stats.
 Identities = 46/167 (27%), Positives = 71/167 (42%), Gaps = 32/167 (19%)

Query: 90  NLFVSAPGAPPPRCSHQMVALSADKGQLWMFGGEFSSASESQFHHYKDLWVFRMGEKK-- 147
           NL  +    P PR  H M+ + +   +LW+FGGE      +  H +    V R  + +  
Sbjct: 157 NLVSTQSPLPSPRTGHSMLLVDS---KLWIFGGECQGKYLNDIHLFDTKGVDRRTQSELK 213

Query: 148 ---------------------WEK-IVCKDTPPSRSGHRMIALKKHLVVFGGFHDNLREA 185
                                WE   +   +PP RS H +  ++  + V GG +D     
Sbjct: 214 QKANANNVEKANMEFDETDWSWETPFLHSSSPPPRSNHSVTLVQGKIFVHGGHNDT---- 269

Query: 186 KYYNDVHIFDLETYAWKKIEPLGAGPAPRSGCQMAATPDGKILISGG 232
              +D+ +FDLET +W ++  +G  P PR G Q A T D  + I GG
Sbjct: 270 GPLSDLWLFDLETLSWTEVRSIGRFPGPREGHQ-ATTIDDTVYIYGG 315

Acts as a cell end marker required for efficient new end take-off (NETO), whereby growth is activated at the cell end to generate bipolarity in extending cells. Also required for proper placement of the septum.

Schizosaccharomyces pombe (strain 972 / ATCC 24843) (taxid: 284812)

>sp|Q5R4Q7|LZTR1_PONAB Leucine-zipper-like transcriptional regulator 1 OS=Pongo abelii GN=LZTR1 PE=2 SV=1

 Score = 64.3 bits (155), Expect = 9e-10,   Method: Compositional matrix adjust.
 Identities = 43/155 (27%), Positives = 71/155 (45%), Gaps = 24/155 (15%)

Query: 93  VSAPGAPPPRCSHQMVALSADKGQLWMFGGEFSSASESQFHHYKDLWVFRMGEKKWEKI- 151
           V+  G  PP C +  VA+  DK  +++F G+  +   +      +L+ F   +K W +I 
Sbjct: 218 VAQSGEIPPSCCNFPVAVRRDK--MFVFSGQSGAKITN------NLFQFEFKDKTWTRIP 269

Query: 152 ---VCKDTPP---SRSGHRMIALKKHLVVFGGFHDNLREAKYYNDVHIFDLETYAWKKIE 205
              + + +PP    R GH M+A  +HL VFGG  DN       N++H +D++   W+ ++
Sbjct: 270 TEHLLRGSPPPPQRRYGHTMVAFDRHLYVFGGAADNTLP----NELHCYDVDFQTWEVVQ 325

Query: 206 P-----LGAGPAPRSGCQMAATPDGKILISGGYSK 235
           P     +G    P   C     P       GG+ K
Sbjct: 326 PSSDSEVGGAEVPERACASEEVPTLTSEERGGFKK 360

Probable transcriptional regulator that may play a crucial role in embryogenesis.

Pongo abelii (taxid: 9601)

>sp|Q7Z6M1|RABEK_HUMAN Rab9 effector protein with kelch motifs OS=Homo sapiens GN=RABEPK PE=1 SV=1

 Score = 63.9 bits (154), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 58/191 (30%), Positives = 79/191 (41%), Gaps = 17/191 (8%)

Query: 47  RRANFSFLAHPDKDQLILFGGEFYDGQKFVFGSPKALDHLILMNLFVSAPGAPPPRCSHQ 106
           R  + SF+     D++ +FGG    G +                   S P  P PR  H 
Sbjct: 86  RYEHASFIPSCTPDRIWVFGGANQSGNRNCLQVLNPETRTWTTPEVTSPP--PSPRTFHT 143

Query: 107 MVALSADKGQLWMFGGEFSSASESQFHHYKDLWVFRMGEKKWEKIVCKDTPPS-RSGHRM 165
             A  A   QL++FGG    A   Q      L VF      W +      PPS R GH M
Sbjct: 144 SSA--AIGNQLYVFGGGERGAQPVQ---DTKLHVFDANTLTWSQPETLGNPPSPRHGHVM 198

Query: 166 IALKKHLVVFGGFHDNLREAKYYNDVHIFDLETYAWKKIEPLGAGPAPRSGCQM-AATPD 224
           +A    L + GG    L   ++Y+D+H  D+    W+K+ P GA PA   GC   +A   
Sbjct: 199 VAAGTKLFIHGG----LAGDRFYDDLHCIDISDMKWQKLNPTGAAPA---GCAAHSAVAM 251

Query: 225 GK-ILISGGYS 234
           GK + I GG +
Sbjct: 252 GKHVYIFGGMT 262

Rab9 effector required for endosome to trans-Golgi network (TGN) transport.

Homo sapiens (taxid: 9606)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	265
350396938	530	PREDICTED: kelch domain-containing prote	0.883	0.441	0.599	1e-84
340715949	525	PREDICTED: kelch domain-containing prote	0.883	0.445	0.587	4e-84
91079999	511	PREDICTED: similar to kelch repeat prote	0.883	0.457	0.591	5e-83
307196997	523	Kelch domain-containing protein 4 [Harpe	0.924	0.468	0.565	6e-83
156541487	537	PREDICTED: kelch domain-containing prote	0.886	0.437	0.593	1e-82
383866033	529	PREDICTED: kelch domain-containing prote	0.883	0.442	0.570	8e-81
242023078	530	kelch domain-containing protein, putativ	0.898	0.449	0.599	2e-79
328793863	497	PREDICTED: kelch domain-containing prote	0.883	0.470	0.558	3e-77
321471053	520	hypothetical protein DAPPUDRAFT_302849 [	0.883	0.45	0.560	8e-75
157125204	509	kelch repeat protein [Aedes aegypti] gi|	0.947	0.493	0.488	1e-70

>gi|350396938|ref|XP_003484714.1| PREDICTED: kelch domain-containing protein 4-like [Bombus impatiens]

 Score =  318 bits (816), Expect = 1e-84,   Method: Compositional matrix adjust.
 Identities = 148/247 (59%), Positives = 184/247 (74%), Gaps = 13/247 (5%)

Query: 18  EDIEKIVRDIEAEEKRKNKVIEKVVPEPTRRANFSFLAHPDKDQLILFGGEFYDGQK-FV 76
           EDIE ++  IE EE ++ +VIEK V  P+RR NF+  AHP KD+LI+ GGEF+DG+  FV
Sbjct: 39  EDIENVIAQIEKEETKRQRVIEKAVDPPSRRVNFTLTAHPSKDELIMLGGEFHDGRTTFV 98

Query: 77  FGSPKALDHLILMNL------FVSAPGAPPPRCSHQMVALSADKGQLWMFGGEFSSASES 130
           +G       + + NL       + APGAPPPRC HQ V  S +KG+LW+FGGEFSS SES
Sbjct: 99  YGD------MFIYNLNKNEWMIIKAPGAPPPRCGHQAVTTSTNKGELWVFGGEFSSPSES 152

Query: 131 QFHHYKDLWVFRMGEKKWEKIVCKDTPPSRSGHRMIALKKHLVVFGGFHDNLREAKYYND 190
           QF+HY+DLWV+R GEKKWEKI+    P +RSGHRM  +KK LVVFGGFHDNLR+ KYYND
Sbjct: 153 QFYHYRDLWVYRFGEKKWEKILSSGGPSARSGHRMAHIKKQLVVFGGFHDNLRDYKYYND 212

Query: 191 VHIFDLETYAWKKIEPLGAGPAPRSGCQMAATPDGKILISGGYSKQSVKKDVDKGIVHTD 250
           VHIF+LETY W KI+ +G  P PRSGC +  TPD K+L+ GGYSK+ +KKDVDKG +H+D
Sbjct: 213 VHIFNLETYVWHKIDIIGTPPFPRSGCILLPTPDNKLLVYGGYSKERIKKDVDKGCIHSD 272

Query: 251 TFLLTPD 257
            FLLTP+
Sbjct: 273 MFLLTPE 279

Source: Bombus impatiens

Species: Bombus impatiens

Genus: Bombus

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|340715949|ref|XP_003396468.1| PREDICTED: kelch domain-containing protein 4-like [Bombus terrestris]

 Score =  317 bits (811), Expect = 4e-84,   Method: Compositional matrix adjust.
 Identities = 145/247 (58%), Positives = 184/247 (74%), Gaps = 13/247 (5%)

Query: 18  EDIEKIVRDIEAEEKRKNKVIEKVVPEPTRRANFSFLAHPDKDQLILFGGEFYDGQK-FV 76
           EDIE ++  IE EE ++ +VIEK V  P+RR NF+  AHP KD+L++ GGEF+DG+  FV
Sbjct: 39  EDIENVIAQIEKEETKRQRVIEKTVDPPSRRVNFTLTAHPFKDELVMLGGEFHDGRTTFV 98

Query: 77  FGSPKALDHLILMNL------FVSAPGAPPPRCSHQMVALSADKGQLWMFGGEFSSASES 130
           +G       + + N+       + APGAPPPRC HQ V  SA+KG+LW+FGGEFSS SES
Sbjct: 99  YGD------MFIYNINKNEWTIIKAPGAPPPRCGHQAVTTSANKGELWVFGGEFSSPSES 152

Query: 131 QFHHYKDLWVFRMGEKKWEKIVCKDTPPSRSGHRMIALKKHLVVFGGFHDNLREAKYYND 190
           QF+HY+DLWV+R GEKKWEK++    P +RSGHRM  +KK L+VFGGFHDNLR  KYYND
Sbjct: 153 QFYHYRDLWVYRFGEKKWEKVLSSGGPSARSGHRMAHIKKQLIVFGGFHDNLRNYKYYND 212

Query: 191 VHIFDLETYAWKKIEPLGAGPAPRSGCQMAATPDGKILISGGYSKQSVKKDVDKGIVHTD 250
           VHIF+LETY W KI+ +G  P PRSGC +  TPD K+L+ GGYSK+ +KKDVDKG +H+D
Sbjct: 213 VHIFNLETYVWHKIDVIGTPPFPRSGCILLPTPDNKLLVYGGYSKERIKKDVDKGCIHSD 272

Query: 251 TFLLTPD 257
            FLLTP+
Sbjct: 273 MFLLTPE 279

Source: Bombus terrestris

Species: Bombus terrestris

Genus: Bombus

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|91079999|ref|XP_966589.1| PREDICTED: similar to kelch repeat protein isoform 1 [Tribolium castaneum] gi|270003222|gb|EEZ99669.1| hypothetical protein TcasGA2_TC002426 [Tribolium castaneum]

 Score =  313 bits (802), Expect = 5e-83,   Method: Compositional matrix adjust.
 Identities = 146/247 (59%), Positives = 186/247 (75%), Gaps = 13/247 (5%)

Query: 18  EDIEKIVRDIEAEEKRKNKVIEKVVPEPTRRANFSFLAHPDKDQLILFGGEFYDGQK-FV 76
           EDIE IV  IE EEK++ +V E V+  PTRR NF+ + HPDK+QLIL+GGEFY+GQK FV
Sbjct: 39  EDIETIVSQIEKEEKKRQQVSESVIGAPTRRLNFTLIPHPDKEQLILYGGEFYNGQKTFV 98

Query: 77  FGSPKALDHLILMNL------FVSAPGAPPPRCSHQMVALSADKGQLWMFGGEFSSASES 130
           +      + L   N+       V AP  PPPRCSHQMVA SA+KGQLW+FGGEF S S++
Sbjct: 99  Y------NDLFFYNIPNNTWTVVKAPAGPPPRCSHQMVATSANKGQLWLFGGEFVSPSQA 152

Query: 131 QFHHYKDLWVFRMGEKKWEKIVCKDTPPSRSGHRMIALKKHLVVFGGFHDNLREAKYYND 190
           QF+HY+DLWV+ +G K+WEKI+  + P +RSGHRM+ +KK+L+VFGGFHDNLR+ KY+ND
Sbjct: 153 QFYHYRDLWVYHLGAKQWEKIIAPNGPSARSGHRMVYVKKNLIVFGGFHDNLRDYKYFND 212

Query: 191 VHIFDLETYAWKKIEPLGAGPAPRSGCQMAATPDGKILISGGYSKQSVKKDVDKGIVHTD 250
           V+ F+ E+Y W K+EP G  PAPRS C M    DG++LI GGYSK+ +KKDVDKG V TD
Sbjct: 213 VYCFNTESYKWTKLEPGGTPPAPRSACCMVPLNDGRVLIYGGYSKEKIKKDVDKGHVFTD 272

Query: 251 TFLLTPD 257
           +FLLTP+
Sbjct: 273 SFLLTPE 279

Source: Tribolium castaneum

Species: Tribolium castaneum

Genus: Tribolium

Family: Tenebrionidae

Order: Coleoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|307196997|gb|EFN78372.1| Kelch domain-containing protein 4 [Harpegnathos saltator]

 Score =  313 bits (801), Expect = 6e-83,   Method: Compositional matrix adjust.
 Identities = 146/258 (56%), Positives = 183/258 (70%), Gaps = 13/258 (5%)

Query: 7   RHAMSWTIMFNEDIEKIVRDIEAEEKRKNKVIEKVVPEPTRRANFSFLAHPDKDQLILFG 66
           R       +  +DIEK+V +IE EE R+ +V E +V  P+RR NF+  AHP KD+LI+ G
Sbjct: 28  RQKKELAALGEDDIEKVVAEIEQEEARRQRVKEVIVEPPSRRVNFTLNAHPYKDELIMLG 87

Query: 67  GEFYDG-QKFVFGSPKALDHLILMNL------FVSAPGAPPPRCSHQMVALSADKGQLWM 119
           GEFYDG Q  V+G       +   N+       V APGAPPPRC HQ V  +A  G+LW+
Sbjct: 88  GEFYDGRQTIVYGD------MFFYNINKKEWSVVKAPGAPPPRCGHQAVITAARGGELWV 141

Query: 120 FGGEFSSASESQFHHYKDLWVFRMGEKKWEKIVCKDTPPSRSGHRMIALKKHLVVFGGFH 179
           FGGEFSS SESQF+HY+DLWVF + +KKWEKI+  + P +RSGHRM+ LKK L+VFGGFH
Sbjct: 142 FGGEFSSPSESQFYHYRDLWVFLLSDKKWEKIIAPNGPSARSGHRMVLLKKQLIVFGGFH 201

Query: 180 DNLREAKYYNDVHIFDLETYAWKKIEPLGAGPAPRSGCQMAATPDGKILISGGYSKQSVK 239
           DNLR+ KY+NDV+ FDLETY W+KIEP G  P PRSGC +  TP  KI++ GGY+K+ +K
Sbjct: 202 DNLRDYKYFNDVYAFDLETYVWRKIEPAGLAPTPRSGCVVLPTPGNKIMVYGGYNKERIK 261

Query: 240 KDVDKGIVHTDTFLLTPD 257
           KDVDKG +H D FLLTPD
Sbjct: 262 KDVDKGRIHDDMFLLTPD 279

Source: Harpegnathos saltator

Species: Harpegnathos saltator

Genus: Harpegnathos

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|156541487|ref|XP_001600405.1| PREDICTED: kelch domain-containing protein 4-like [Nasonia vitripennis]

 Score =  311 bits (798), Expect = 1e-82,   Method: Compositional matrix adjust.
 Identities = 146/246 (59%), Positives = 181/246 (73%), Gaps = 11/246 (4%)

Query: 18  EDIEKIVRDIEAEEKRKNKVIEKVVPEPTRRANFSFLAHPDKDQLILFGGEFYDGQKFVF 77
           +DIEK+V  IE EE R+ KV+E VV  P+RR NFS   HP KD+LI+FGGEFYDGQK V 
Sbjct: 38  DDIEKVVAQIEKEEARRQKVVEAVVAPPSRRVNFSLTPHPFKDELIMFGGEFYDGQKTV- 96

Query: 78  GSPKALDHLILMNL------FVSAPGAPPPRCSHQMVALSADKGQLWMFGGEFSSASESQ 131
                   L   N+       V APGAPPPRC HQ +A  ++KG+LW+FGGEFSS SESQ
Sbjct: 97  ----VYGDLFFYNISKNEWTVVKAPGAPPPRCGHQAIATQSNKGELWIFGGEFSSPSESQ 152

Query: 132 FHHYKDLWVFRMGEKKWEKIVCKDTPPSRSGHRMIALKKHLVVFGGFHDNLREAKYYNDV 191
           F+HY+DLWVF +GEK+WEKI     P +RSGHRMI +KK+L VFGGFHDNLR+ KY+ND+
Sbjct: 153 FYHYRDLWVFHIGEKRWEKITAPGGPSARSGHRMINIKKNLYVFGGFHDNLRDYKYFNDI 212

Query: 192 HIFDLETYAWKKIEPLGAGPAPRSGCQMAATPDGKILISGGYSKQSVKKDVDKGIVHTDT 251
           + F++ TY W K++  G  PAPRSGC +  TP+ KI++ GGYSK+ +KKDVDKG VHTD 
Sbjct: 213 YCFNMATYKWSKLDTSGNPPAPRSGCIVLPTPENKIIVYGGYSKERIKKDVDKGHVHTDM 272

Query: 252 FLLTPD 257
           FLLTP+
Sbjct: 273 FLLTPE 278

Source: Nasonia vitripennis

Species: Nasonia vitripennis

Genus: Nasonia

Family: Pteromalidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|383866033|ref|XP_003708476.1| PREDICTED: kelch domain-containing protein 4-like [Megachile rotundata]

 Score =  306 bits (783), Expect = 8e-81,   Method: Compositional matrix adjust.
 Identities = 141/247 (57%), Positives = 181/247 (73%), Gaps = 13/247 (5%)

Query: 18  EDIEKIVRDIEAEEKRKNKVIEKVVPEPTRRANFSFLAHPDKDQLILFGGEFYDGQK-FV 76
           +DIE ++ +IE EE R+  V+EK V  P+RR N +  AHP KD+LI+FGGEF+DG+  FV
Sbjct: 39  DDIEHVIAEIEREEARRKHVVEKTVAPPSRRINCTLTAHPFKDELIMFGGEFHDGRTTFV 98

Query: 77  FGSPKALDHLILMNL------FVSAPGAPPPRCSHQMVALSADKGQLWMFGGEFSSASES 130
           +G       +   NL       + APG+PPPRCSHQ V  + +KG+LW+FGGEF+S SES
Sbjct: 99  YGD------MFTYNLSKNEWTIIKAPGSPPPRCSHQAVTTNVNKGELWIFGGEFTSPSES 152

Query: 131 QFHHYKDLWVFRMGEKKWEKIVCKDTPPSRSGHRMIALKKHLVVFGGFHDNLREAKYYND 190
           QF+HYKDLWV+R   KKWEKI+    P +RSGHRM  +KK L++FGGFHDNLR+ KYYND
Sbjct: 153 QFYHYKDLWVYRFATKKWEKILSPGGPSARSGHRMALIKKQLIIFGGFHDNLRDYKYYND 212

Query: 191 VHIFDLETYAWKKIEPLGAGPAPRSGCQMAATPDGKILISGGYSKQSVKKDVDKGIVHTD 250
           V++F+L+TY W KIE  G  P PRSGC M  TPD K+L+ GGYSK+ +KKDVDKG VHTD
Sbjct: 213 VYLFNLDTYTWHKIEMSGVSPPPRSGCIMLPTPDNKVLVYGGYSKERIKKDVDKGYVHTD 272

Query: 251 TFLLTPD 257
            +L+TP+
Sbjct: 273 MYLMTPE 279

Source: Megachile rotundata

Species: Megachile rotundata

Genus: Megachile

Family: Megachilidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|242023078|ref|XP_002431963.1| kelch domain-containing protein, putative [Pediculus humanus corporis] gi|212517314|gb|EEB19225.1| kelch domain-containing protein, putative [Pediculus humanus corporis]

 Score =  301 bits (770), Expect = 2e-79,   Method: Compositional matrix adjust.
 Identities = 145/242 (59%), Positives = 192/242 (79%), Gaps = 4/242 (1%)

Query: 18  EDIEKIVRDIEAEEKRKNKVIEKVVPEPTRRANFSFLAHPDKDQLILFGGEFYDGQKFVF 77
           +DIEKI+  IE EEK+K ++ E  + +PTRR NFSF+AHP K++L LFGGE+++GQK V 
Sbjct: 37  DDIEKILAQIEEEEKKKVQIKEIQIDKPTRRVNFSFVAHPLKEELFLFGGEYFNGQKTVV 96

Query: 78  GSPKALDHLILMN--LFVSAPGAPPPRCSHQMVALSADKGQLWMFGGEFSSASESQFHHY 135
            +   L++ I  N  + + AP APPPRC HQM++L+ +KGQLW+FGGEF+S++++QF+HY
Sbjct: 97  YN-DLLNYNISKNEWMVIQAPNAPPPRCGHQMISLAKEKGQLWLFGGEFTSSTQNQFYHY 155

Query: 136 KDLWVFRMGEKKWEKIVCKDTPPSRSGHRMIALKKHLVVFGGFHDNLREAKYYNDVHIFD 195
           KDLWVF +G+KKWEKI   D P +RSGHRM+  K  +++FGG+HDNLR+ KY+NDV++F+
Sbjct: 156 KDLWVFHLGDKKWEKI-STDGPSARSGHRMVHFKNQIIIFGGYHDNLRDYKYFNDVYVFN 214

Query: 196 LETYAWKKIEPLGAGPAPRSGCQMAATPDGKILISGGYSKQSVKKDVDKGIVHTDTFLLT 255
           L+ Y W KIEP G  PAPRSGCQM    DGKILI+GGYSK+ VKKDVDKG+VHTD FLL+
Sbjct: 215 LDDYKWSKIEPSGNPPAPRSGCQMVPLADGKILITGGYSKEKVKKDVDKGVVHTDMFLLS 274

Query: 256 PD 257
           PD
Sbjct: 275 PD 276

Source: Pediculus humanus corporis

Species: Pediculus humanus

Genus: Pediculus

Family: Pediculidae

Order: Phthiraptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|328793863|ref|XP_624296.3| PREDICTED: kelch domain-containing protein 4-like, partial [Apis mellifera]

 Score =  294 bits (752), Expect = 3e-77,   Method: Compositional matrix adjust.
 Identities = 138/247 (55%), Positives = 177/247 (71%), Gaps = 13/247 (5%)

Query: 18  EDIEKIVRDIEAEEKRKNKVIEKVVPEPTRRANFSFLAHPDKDQLILFGGEFYDGQ-KFV 76
           +DIE I+  IE EE +K  +IEK+V  P+RR NF+   HP KD+LI+FGGEF+DG+  FV
Sbjct: 39  DDIENIIAQIEKEEAKKQCIIEKIVAPPSRRINFTLTVHPFKDELIMFGGEFHDGRMTFV 98

Query: 77  FGSPKALDHLILMNL------FVSAPGAPPPRCSHQMVALSADKGQLWMFGGEFSSASES 130
           +G       + + NL       V  PGAPPPRC HQ +  +A+KG+ W+FGGEFSS SES
Sbjct: 99  YGD------MFIYNLNKNEWMIVKVPGAPPPRCGHQAITTAANKGEFWIFGGEFSSPSES 152

Query: 131 QFHHYKDLWVFRMGEKKWEKIVCKDTPPSRSGHRMIALKKHLVVFGGFHDNLREAKYYND 190
           QF+HYKDLWV+R  EKKW KI+    P +RSGHRM+ +KK LV+FGGFHDNL++ KYYND
Sbjct: 153 QFYHYKDLWVYRFAEKKWIKILRPGGPSARSGHRMVHIKKQLVIFGGFHDNLKDYKYYND 212

Query: 191 VHIFDLETYAWKKIEPLGAGPAPRSGCQMAATPDGKILISGGYSKQSVKKDVDKGIVHTD 250
           V+IFDLETY W KIE  G  P PRSG  + +  + K+L+ GGYSK+ +KKDVDKG +H D
Sbjct: 213 VYIFDLETYIWHKIELSGIPPLPRSGSILLSISENKLLLYGGYSKERIKKDVDKGCIHND 272

Query: 251 TFLLTPD 257
            FL+ P+
Sbjct: 273 MFLMIPE 279

Source: Apis mellifera

Species: Apis mellifera

Genus: Apis

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|321471053|gb|EFX82027.1| hypothetical protein DAPPUDRAFT_302849 [Daphnia pulex]

 Score =  286 bits (731), Expect = 8e-75,   Method: Compositional matrix adjust.
 Identities = 139/248 (56%), Positives = 188/248 (75%), Gaps = 14/248 (5%)

Query: 18  EDIEKIVRDIEAEEKRKNKVIEKVVPE-PTRRANFSFLAHPDKDQLILFGGEFYDGQK-F 75
           ED+E++++++E  +++KN ++E ++ + P+RRANFS  AH +KD++++FGGE+++GQK +
Sbjct: 38  EDLEQVIKELEEADRKKNAIVEDLLKDGPSRRANFSLNAHFEKDEIVMFGGEYFNGQKTY 97

Query: 76  VFGSPKALDHLILMNLF------VSAPGAPPPRCSHQMVALSADKGQLWMFGGEFSSASE 129
           V+G       L+L NL       + APGA PPRC+HQ V  + + GQLW+FGGE++S S+
Sbjct: 98  VYGD------LVLYNLKKKTWLKIQAPGAAPPRCAHQAVLTAGEGGQLWIFGGEYASPSQ 151

Query: 130 SQFHHYKDLWVFRMGEKKWEKIVCKDTPPSRSGHRMIALKKHLVVFGGFHDNLREAKYYN 189
           SQF+HYKDLWVF +  KKWEKI     P SRSGHRM+  KK+LVVFGG+HDN  + KYYN
Sbjct: 152 SQFYHYKDLWVFYLKTKKWEKINATLGPSSRSGHRMVLCKKNLVVFGGYHDNGLDYKYYN 211

Query: 190 DVHIFDLETYAWKKIEPLGAGPAPRSGCQMAATPDGKILISGGYSKQSVKKDVDKGIVHT 249
           DVH+FDLE+  W+KIEP G  P+ RSGCQM   PDG+ILI+GGYSK  VKKDVDKGI+H+
Sbjct: 212 DVHLFDLESRTWRKIEPSGTAPSARSGCQMVTLPDGRILITGGYSKNKVKKDVDKGIIHS 271

Query: 250 DTFLLTPD 257
           D FLL PD
Sbjct: 272 DAFLLFPD 279

Source: Daphnia pulex

Species: Daphnia pulex

Genus: Daphnia

Family: Daphniidae

Order: Diplostraca

Class: Branchiopoda

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|157125204|ref|XP_001660646.1| kelch repeat protein [Aedes aegypti] gi|108873724|gb|EAT37949.1| AAEL010118-PA [Aedes aegypti]

 Score =  272 bits (696), Expect = 1e-70,   Method: Compositional matrix adjust.
 Identities = 123/252 (48%), Positives = 169/252 (67%), Gaps = 1/252 (0%)

Query: 13  TIMFNEDIEKIVRDIEAEEKRKNKVIEKVVPEPTRRANFSFLAHPDKDQLILFGGEFYDG 72
           T +  +DIE IV   E +E + + + E +   PT R NF+  +HPDK+++ + GGEF++G
Sbjct: 34  TKLGEDDIESIVAKYETKETKSSDLTESLCAPPTARVNFAICSHPDKEEIFINGGEFFNG 93

Query: 73  QK-FVFGSPKALDHLILMNLFVSAPGAPPPRCSHQMVALSADKGQLWMFGGEFSSASESQ 131
           QK FV+G     +        + +   P PR  HQMV++S D GQ+W+FGGEF+S S+ Q
Sbjct: 94  QKTFVYGDYYCYNVAKNEWKVLKSSICPAPRSGHQMVSVSTDGGQIWLFGGEFASPSQLQ 153

Query: 132 FHHYKDLWVFRMGEKKWEKIVCKDTPPSRSGHRMIALKKHLVVFGGFHDNLREAKYYNDV 191
           F+HYKDLWV+R+  K+WEKI   + P +RSGHRM+  KK L VFGGFHDN    +Y+ND+
Sbjct: 154 FYHYKDLWVYRIATKQWEKINAANGPSARSGHRMVVTKKKLFVFGGFHDNNTSYRYFNDI 213

Query: 192 HIFDLETYAWKKIEPLGAGPAPRSGCQMAATPDGKILISGGYSKQSVKKDVDKGIVHTDT 251
           H F LE Y W K+EP G  PAPRSGC M A P+GKIL+ GGYSK +VKK++D+G+ H D 
Sbjct: 214 HFFSLENYTWTKVEPSGTPPAPRSGCCMVANPEGKILVWGGYSKSNVKKEIDRGVTHADM 273

Query: 252 FLLTPDSKTLRS 263
           + LT D   ++S
Sbjct: 274 YSLTSDKNEMKS 285

Source: Aedes aegypti

Species: Aedes aegypti

Genus: Aedes

Family: Culicidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	265
MGI|MGI:2384569	584	Klhdc4 "kelch domain containin	0.898	0.407	0.510	5.2e-65
TAIR|locus:2177542	666	AT5G50310 [Arabidopsis thalian	0.886	0.352	0.453	1.2e-51
CGD|CAL0001573	638	orf19.5009 [Candida albicans (	0.909	0.377	0.355	1.4e-32
UNIPROTKB|Q5AKW8	638	KEL3 "Putative uncharacterized	0.909	0.377	0.355	1.4e-32
ASPGD|ASPL0000047740	677	AN2090 [Emericella nidulans (t	0.818	0.320	0.340	3.6e-31
SGD|S000006184	651	KEL3 "Cytoplasmic protein of u	0.901	0.367	0.351	7.6e-28
ZFIN|ZDB-GENE-030131-2126	537	krcp "kelch repeat-containing	0.735	0.363	0.278	3e-12
DICTYBASE|DDB_G0268860	943	rngB "Kelch repeat-containing	0.471	0.132	0.318	1e-11
CGD|CAL0005234	1018	KEL1 [Candida albicans (taxid:	0.626	0.163	0.310	1e-10
UNIPROTKB|Q5AB80	1018	KEL1 "Putative uncharacterized	0.626	0.163	0.310	1e-10

MGI|MGI:2384569 Klhdc4 "kelch domain containing 4" [Mus musculus (taxid:10090)]

 Score = 662 (238.1 bits), Expect = 5.2e-65, P = 5.2e-65
 Identities = 123/241 (51%), Positives = 160/241 (66%)

Query:    18 EDIEKIVRDIEAEEKRKNKVIEKVVPEPTRRANFSFLAHPDKDQLILFGGEFYDGQKFVF 77
             ED+E ++   +  + +K +V E   P P+ R N S  AHP+KD+LILFGGE+++GQK  F
Sbjct:    34 EDLEALIAHFQTLDAKKTQVTETPCPPPSPRLNASLSAHPEKDELILFGGEYFNGQK-TF 92

Query:    78 GSPKALDHLILMNLF--VSAPGAPPPRCSHQMVALSADKGQLWMFGGEFSSASESQFHHY 135
                +   + I  + +  V  PG PP RC+HQ V +    GQLW+FGGEF+S    QF+HY
Sbjct:    93 MYNELYIYSIRKDTWTKVDIPGPPPRRCAHQAVVVPQGGGQLWVFGGEFASPDGEQFYHY 152

Query:   136 KDLWVFRMGEKKWEKIVCKDTPPSRSGHRMIALKKHLVVFGGFHDNLREAKYYNDVHIFD 195
             KDLWV  +  K WE+I     P  RSGHRM+A K+ L++FGGFH++ R+  YY+DV+ F 
Sbjct:   153 KDLWVLHLATKTWEQIRSTGGPSGRSGHRMVAWKRQLILFGGFHESARDYIYYSDVYTFS 212

Query:   196 LETYAWKKIEPLGAGPAPRSGCQMAATPDGKILISGGYSKQSVKKDVDKGIVHTDTFLLT 255
             L+T+ W K+ P GAGP PRSGC MA TP G I I GGYSKQ VKKDVDKG  H+D FLL 
Sbjct:   213 LDTFQWSKLSPSGAGPTPRSGCLMAVTPQGSIAIYGGYSKQRVKKDVDKGTQHSDMFLLK 272

Query:   256 P 256
             P
Sbjct:   273 P 273

GO:0003674 "molecular_function" evidence=ND

GO:0005575 "cellular_component" evidence=ND

GO:0008150 "biological_process" evidence=ND

TAIR|locus:2177542 AT5G50310 [Arabidopsis thaliana (taxid:3702)]

 Score = 536 (193.7 bits), Expect = 1.2e-51, P = 1.2e-51
 Identities = 111/245 (45%), Positives = 161/245 (65%)

Query:    18 EDIEKIVRDIEAEEKRKNKV-IEKVVPEPTRRANFSFLAHPDKD-QLILFGGEFYDGQK- 74
             +DI+ I+ +I+ EE +K +V +E+ V  P+ R+N S   +P K+ +LIL+GGEFY+GQK 
Sbjct:    38 DDIDAILLNIQKEEAKKKEVHVEENVAAPSPRSNCSLTINPLKETELILYGGEFYNGQKT 97

Query:    75 FVFGSPKALDHLILMNLFVSAPGAPPPRCSHQMVALSADKGQLWMFGGEFSSASESQFHH 134
             +V+G     D        VS+P +PPPR SHQ VA    K  L++FGGEF+S ++ +FHH
Sbjct:    98 YVYGDLYRYDVEKQEWKLVSSPNSPPPRSSHQAVAW---KNYLYIFGGEFTSPNQERFHH 154

Query:   135 YKDLWVFRMGEKKWEKIVCKDTPPSRSGHRMIALKKHLVVFGGFHDNLREAKYYNDVHIF 194
             YKD W+  +   +WE++  K  P  RSGHRM+  K  +++FGGF+D LRE +YYND+++F
Sbjct:   155 YKDFWMLDVKTNQWEQLNLKGCPSPRSGHRMVLYKHKIIIFGGFYDTLREVRYYNDLYVF 214

Query:   195 DLETYAWKKIEPL-GA-GPAPRSGCQMAATPDGKILISGGYSKQ-SVKKDVDKGIVHTDT 251
             DL+ Y W++I+P  GA  P  RSG Q     D +I + GGYSK+ S +K  +KGIVH D 
Sbjct:   215 DLDQYKWQEIKPKPGAMWPTARSGFQFFVYQD-EIFLYGGYSKEVSSEKSSEKGIVHADL 273

Query:   252 FLLTP 256
             + L P
Sbjct:   274 WSLDP 278

GO:0005737 "cytoplasm" evidence=ISM

GO:0008150 "biological_process" evidence=ND

GO:0006869 "lipid transport" evidence=RCA

CGD|CAL0001573 orf19.5009 [Candida albicans (taxid:5476)]

 Score = 362 (132.5 bits), Expect = 1.4e-32, P = 1.4e-32
 Identities = 91/256 (35%), Positives = 137/256 (53%)

Query:    17 NEDIEKIVRDIEAEEKRKNKV-IEKVVPEPTRRANFSFLAHP--DKDQLILFGGEFYDGQ 73
             ++DI+ I+     E+    ++ IE     PT+R N + +++P  +K +LILFGGE  DG 
Sbjct:    46 DDDIDAILEKYAKEQLEFTEIKIEICDHHPTKRLNPTMVSNPLHNKRELILFGGENTDGG 105

Query:    74 KFVFGSPK---ALDHLILMNLFVSAPGAPPPRCSHQMVALSADKGQLWMFGGEFSSASES 130
                F +     ++D+       +S+  +P PR SH M   S   G + MFGGEFSS  +S
Sbjct:   106 HSKFYNDLYTYSIDNDTWRK--ISSKNSPLPRSSHAMC--SHPSGIILMFGGEFSSPKQS 161

Query:   131 QFHHYKDLWVFRMGEKKWEKIVCKDTPPSRSGHRMIALKKHLVVFGGFHDNLREAKYYND 190
              F+HY D W+     K+W+KI  K  P +RSGHR+   K ++++ GGF D      Y ND
Sbjct:   162 TFYHYGDTWILDADTKEWQKIDSKKGPSARSGHRLAVWKNYIILHGGFRDLGTMTTYLND 221

Query:   191 VHIFDLETYAWKKIE--PLGAGPAPRSGCQMAATPDGKILISGGYSKQSVKKDVDKGIVH 248
             V +FD+  + W ++E  P    P  RSG  +    +G + I GGY+K   KK + KG V 
Sbjct:   222 VWLFDVTEFKWTQVEFPPNHPIPDARSGHSLLPCSEGAV-IYGGYTKIKAKKGLQKGKVL 280

Query:   249 TDTFLLT--PDSKTLR 262
              D ++L    D K +R
Sbjct:   281 NDCWILKMKSDPKAVR 296

GO:0003674 "molecular_function" evidence=ND

GO:0005737 "cytoplasm" evidence=IEA

GO:0008150 "biological_process" evidence=ND

UNIPROTKB|Q5AKW8 KEL3 "Putative uncharacterized protein KEL3" [Candida albicans SC5314 (taxid:237561)]

 Score = 362 (132.5 bits), Expect = 1.4e-32, P = 1.4e-32
 Identities = 91/256 (35%), Positives = 137/256 (53%)

Query:    17 NEDIEKIVRDIEAEEKRKNKV-IEKVVPEPTRRANFSFLAHP--DKDQLILFGGEFYDGQ 73
             ++DI+ I+     E+    ++ IE     PT+R N + +++P  +K +LILFGGE  DG 
Sbjct:    46 DDDIDAILEKYAKEQLEFTEIKIEICDHHPTKRLNPTMVSNPLHNKRELILFGGENTDGG 105

Query:    74 KFVFGSPK---ALDHLILMNLFVSAPGAPPPRCSHQMVALSADKGQLWMFGGEFSSASES 130
                F +     ++D+       +S+  +P PR SH M   S   G + MFGGEFSS  +S
Sbjct:   106 HSKFYNDLYTYSIDNDTWRK--ISSKNSPLPRSSHAMC--SHPSGIILMFGGEFSSPKQS 161

Query:   131 QFHHYKDLWVFRMGEKKWEKIVCKDTPPSRSGHRMIALKKHLVVFGGFHDNLREAKYYND 190
              F+HY D W+     K+W+KI  K  P +RSGHR+   K ++++ GGF D      Y ND
Sbjct:   162 TFYHYGDTWILDADTKEWQKIDSKKGPSARSGHRLAVWKNYIILHGGFRDLGTMTTYLND 221

Query:   191 VHIFDLETYAWKKIE--PLGAGPAPRSGCQMAATPDGKILISGGYSKQSVKKDVDKGIVH 248
             V +FD+  + W ++E  P    P  RSG  +    +G + I GGY+K   KK + KG V 
Sbjct:   222 VWLFDVTEFKWTQVEFPPNHPIPDARSGHSLLPCSEGAV-IYGGYTKIKAKKGLQKGKVL 280

Query:   249 TDTFLLT--PDSKTLR 262
              D ++L    D K +R
Sbjct:   281 NDCWILKMKSDPKAVR 296

GO:0003674 "molecular_function" evidence=ND

GO:0008150 "biological_process" evidence=ND

ASPGD|ASPL0000047740 AN2090 [Emericella nidulans (taxid:162425)]

 Score = 350 (128.3 bits), Expect = 3.6e-31, P = 3.6e-31
 Identities = 77/226 (34%), Positives = 120/226 (53%)

Query:    19 DIEKIVRDIEAEEKRKNKVIEKVVPEPTRRANFSFLAHP-DKDQLILFGGEFYDGQKFVF 77
             D++ I+     E+ R  KV E V   P+ R++ + LA P ++++L++FGGE++DG    F
Sbjct:    45 DLDAILAQYAEEQARFLKVTEVVSGPPSPRSSATVLASPSNRNELLIFGGEYFDGTLATF 104

Query:    78 GSPKALDHLILMNLF--VSAPGAPPPRCSHQMVALSADKGQLWMFGGEFSSASESQFHHY 135
              +     +LI    +  V++P +P PR  H       + G +++FGGEFSS  +  F+HY
Sbjct:   105 YN-NLFVYLIDRGEWREVTSPNSPLPRSGHAWCR-GGNTGGIYLFGGEFSSPKQGTFYHY 162

Query:   136 KDLWVFRMGEKKWEKIVCKDT-PPSRSGHRMIALKKHLVVFGGFHDNLREAKYYNDVHIF 194
              D W      ++W +I  K   PP+RSGHRM   K ++++FGGF D  ++ KY  D+ I+
Sbjct:   163 NDFWHLDPSTREWSRIETKGKGPPARSGHRMTYFKNYIILFGGFQDTSQQTKYLQDLWIY 222

Query:   195 DLETYAWKK--IEPLGAGPAPRSGCQMAATPDGKILISGGYSKQSV 238
             D   Y W    +      P PRS         G +L  GGYS+  V
Sbjct:   223 DCSKYTWYNPVLSTASQKPDPRSSSSFLPHESGAVLY-GGYSRVKV 267

GO:0008150 "biological_process" evidence=ND

GO:0003674 "molecular_function" evidence=ND

GO:0005737 "cytoplasm" evidence=IEA

SGD|S000006184 KEL3 "Cytoplasmic protein of unknown function" [Saccharomyces cerevisiae (taxid:4932)]

 Score = 319 (117.4 bits), Expect = 7.6e-28, P = 7.6e-28
 Identities = 90/256 (35%), Positives = 135/256 (52%)

Query:    17 NEDIEKIVRDIEAEEKRKNKVIEKVVPEPTRRANFSFLAHP--DKDQLILFGGEFYDGQ- 73
             ++D+++I+     ++     V    V +P+ R +    A+P  +K +L +FGGEF D + 
Sbjct:    48 DQDLDEILSSFSKKQIELEHVDITSVEKPSCRTHPLMFANPQHNKHELFIFGGEFTDPET 107

Query:    74 KFVFGSPKALDHLILMNLFVS--APGAPPPRCSHQMVALSADKGQLWMFGGEFSSASESQ 131
             K          + I  N +    +  AP PR S   VA+    G   + GGEFSS  +S+
Sbjct:   108 KLTHFYNDLYSYSIKNNSWKKYVSQNAPLPRSS-AAVAVHPS-GIALLHGGEFSSPKQSK 165

Query:   132 FHHYKDLWVFRMGEKKWEKIVC--KDTPPS-RSGHRMIALKKHLVVFGGFHD-NLREAKY 187
             F+HY D W+F   E+K+ K+    +D+ PS RSGHR+IA K + ++FGGF D    +  Y
Sbjct:   166 FYHYSDTWLFDCVERKFTKLEFGGRDSSPSARSGHRIIAWKNYFILFGGFRDLGNGQTSY 225

Query:   188 YNDVHIFDLETYAWKKIEPLGAGPAPRSGCQMAATPDGKILISGGYSKQSVK--KDVDKG 245
              ND+  FD+ TY W K+E   + P  RSG     T +  IL+ GGY K   K  K++ KG
Sbjct:   226 LNDLWCFDISTYKWTKLET-NSKPDARSGHCFIPTDNSAILM-GGYCKIIAKNNKNLMKG 283

Query:   246 IVHTDTFLL--TPDSK 259
              +  D + L  TPD K
Sbjct:   284 KILNDAWKLNLTPDPK 299

GO:0008150 "biological_process" evidence=ND

GO:0003674 "molecular_function" evidence=ND

GO:0005737 "cytoplasm" evidence=IDA

ZFIN|ZDB-GENE-030131-2126 krcp "kelch repeat-containing protein" [Danio rerio (taxid:7955)]

 Score = 184 (69.8 bits), Expect = 3.0e-12, P = 3.0e-12
 Identities = 59/212 (27%), Positives = 93/212 (43%)

Query:    43 PEPTRRANFSFLAHPDKDQLILFGGEFYDGQKFVFGSPKALDHLILMNLFVSAPGAPPPR 102
             P P  R   +    P+  ++ +FGG  +  +K+ F     LD        V A G  PP 
Sbjct:   266 PTPEARIGHTATYDPESKRIFVFGGSKH--KKW-FNDVHILDTQSWRWTLVEAQGKVPPL 322

Query:   103 CSHQMVALSADKGQLWMFGGEFSSASESQFHHYKDLWVFRMGEKKW-EKIVCKDTPPSRS 161
               H   + S  +G+L++FGG F             +++F      W + IV  + P  RS
Sbjct:   323 AYH---SCSMFRGELFVFGGVFPRPHPEPDGCSDSIYIFNPEMAIWYQPIVNGEKPAPRS 379

Query:   162 GHRMIALKKHLVVFGGFHDNLREAKYYNDVHIFDLETYAWKKIEPLGAGPAPRS--GCQM 219
             GH    ++  + VFGG+   +     +ND+ + DL    +  ++  G  P+PRS  GC  
Sbjct:   380 GHSACVMQGRIFVFGGWDTPV----CFNDMFMLDLGLMEFSPVKTSGTAPSPRSWHGC-- 433

Query:   220 AATPDGKILISGGYSKQSVKKDVDKGIVHTDT 251
             A   +   LI GGY+  +   D    I +TDT
Sbjct:   434 AVLSESSFLIHGGYNGNNALSDAF--IFNTDT 463

GO:0005575 "cellular_component" evidence=ND

GO:0008150 "biological_process" evidence=ND

DICTYBASE|DDB_G0268860 rngB "Kelch repeat-containing protein" [Dictyostelium discoideum (taxid:44689)]

 Score = 183 (69.5 bits), Expect = 1.0e-11, P = 1.0e-11
 Identities = 44/138 (31%), Positives = 67/138 (48%)

Query:   102 RCSHQMVALSADKGQLWMFGGEFSSASESQFHHYKDLWVFRMGEKKWEKIVCKDTPPS-R 160
             R  H  V     +  L +FGG  +  S+    +Y  + +F +   +W + VC    PS R
Sbjct:   128 RAGHTAVVY---RQNLVVFGGHNNHKSK----YYNSVLLFSLESNEWRQQVCGGVIPSAR 180

Query:   161 SGHRMIALKKH-LVVFGGFHDNLREAKYYNDVHIFDLETYAWKKIEPLGAGPAPRSGCQM 219
             + H    +  + + +FGG+       KYYND++  DLET+ WKK+E  G  P PRSG   
Sbjct:   181 ATHSTFQVNNNKMFIFGGYDGK----KYYNDIYYLDLETWIWKKVEAKGTPPKPRSGHSA 236

Query:   220 AATPDGKILISGGYSKQS 237
                 + K++I GG    S
Sbjct:   237 TMIQNNKLMIFGGCGSDS 254

GO:0005737 "cytoplasm" evidence=IEA;TAS

GO:0008270 "zinc ion binding" evidence=IEA

GO:0046872 "metal ion binding" evidence=IEA

CGD|CAL0005234 KEL1 [Candida albicans (taxid:5476)]

 Score = 176 (67.0 bits), Expect = 1.0e-10, P = 1.0e-10
 Identities = 60/193 (31%), Positives = 85/193 (44%)

Query:    61 QLILFGGE-----FYDGQKFV---FGSPKALDHLILMNLFVSAPGAPPPRCSHQMVALSA 112
             +L LFGG+     F D   F    F SPKA   L+     V     PPP  +H M   S 
Sbjct:   221 RLYLFGGQLENDVFNDLYYFELNSFKSPKATWQLVEPLNDVK----PPPLTNHSM---SV 273

Query:   113 DKGQLWMFGGEFSSASESQFHHYKDLWVFRMGEKKWEKIVCK-DTPPSRSGHRMIALKKH 171
              K ++++FGG +++   S      DLWVF      W ++    D PP  + H        
Sbjct:   274 YKNKVYVFGGVYNNEKVSN-----DLWVFDAINDTWTQVTTTGDIPPPVNEHSSCVADDR 328

Query:   172 LVVFGGFHDNLREAKYYNDVHIFDLETYAWKKIEPLG--AGPAPRSGCQMAATPD-GKIL 228
             + V+GG   N  +   Y+ +++ DL+T  W  ++     +GP PR G  M   P   KIL
Sbjct:   329 MYVYGG---NDFQGIIYSSLYVLDLQTLEWSSLQSSAEKSGPGPRCGHSMTLLPKFNKIL 385

Query:   229 ISGGYSKQSVKKD 241
             I GG     V  D
Sbjct:   386 IMGGDKNDYVDSD 398

GO:0003674 "molecular_function" evidence=ND

GO:0005934 "cellular bud tip" evidence=IEA

GO:0043332 "mating projection tip" evidence=IEA

GO:0005935 "cellular bud neck" evidence=IEA

GO:0005737 "cytoplasm" evidence=IEA

GO:0030447 "filamentous growth" evidence=IMP

GO:0001100 "negative regulation of exit from mitosis" evidence=IEA

GO:0008360 "regulation of cell shape" evidence=IEA

GO:0000755 "cytogamy" evidence=IEA

GO:0044182 "filamentous growth of a population of unicellular organisms" evidence=IMP

UNIPROTKB|Q5AB80 KEL1 "Putative uncharacterized protein KEL2" [Candida albicans SC5314 (taxid:237561)]

 Score = 176 (67.0 bits), Expect = 1.0e-10, P = 1.0e-10
 Identities = 60/193 (31%), Positives = 85/193 (44%)

Query:    61 QLILFGGE-----FYDGQKFV---FGSPKALDHLILMNLFVSAPGAPPPRCSHQMVALSA 112
             +L LFGG+     F D   F    F SPKA   L+     V     PPP  +H M   S 
Sbjct:   221 RLYLFGGQLENDVFNDLYYFELNSFKSPKATWQLVEPLNDVK----PPPLTNHSM---SV 273

Query:   113 DKGQLWMFGGEFSSASESQFHHYKDLWVFRMGEKKWEKIVCK-DTPPSRSGHRMIALKKH 171
              K ++++FGG +++   S      DLWVF      W ++    D PP  + H        
Sbjct:   274 YKNKVYVFGGVYNNEKVSN-----DLWVFDAINDTWTQVTTTGDIPPPVNEHSSCVADDR 328

Query:   172 LVVFGGFHDNLREAKYYNDVHIFDLETYAWKKIEPLG--AGPAPRSGCQMAATPD-GKIL 228
             + V+GG   N  +   Y+ +++ DL+T  W  ++     +GP PR G  M   P   KIL
Sbjct:   329 MYVYGG---NDFQGIIYSSLYVLDLQTLEWSSLQSSAEKSGPGPRCGHSMTLLPKFNKIL 385

Query:   229 ISGGYSKQSVKKD 241
             I GG     V  D
Sbjct:   386 IMGGDKNDYVDSD 398

GO:0003674 "molecular_function" evidence=ND

GO:0030447 "filamentous growth" evidence=IMP

GO:0044182 "filamentous growth of a population of unicellular organisms" evidence=IMP

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q921I2	KLDC4_MOUSE	No assigned EC number	0.5082	0.9018	0.4092	yes	N/A

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database

ID	Length	Definition	E-value
Query	265
PLN02193	470	PLN02193, PLN02193, nitrile-specifier protein	5e-12
PLN02153	341	PLN02153, PLN02153, epithiospecifier protein	3e-10
pfam13415	48	pfam13415, Kelch_3, Galactose oxidase, central dom	3e-06
pfam13964	50	pfam13964, Kelch_6, Kelch motif	5e-06
PRK14131	376	PRK14131, PRK14131, N-acetylneuraminic acid mutaro	6e-06
TIGR03547	346	TIGR03547, muta_rot_YjhT, mutatrotase, YjhT family	8e-06
pfam13854	42	pfam13854, Kelch_5, Kelch motif	8e-06
pfam13415	48	pfam13415, Kelch_3, Galactose oxidase, central dom	6e-05
pfam01344	46	pfam01344, Kelch_1, Kelch motif	1e-04
pfam07646	48	pfam07646, Kelch_2, Kelch motif	1e-04
PLN02193	470	PLN02193, PLN02193, nitrile-specifier protein	2e-04
pfam13418	49	pfam13418, Kelch_4, Galactose oxidase, central dom	2e-04
pfam13418	49	pfam13418, Kelch_4, Galactose oxidase, central dom	2e-04
PLN02153	341	PLN02153, PLN02153, epithiospecifier protein	6e-04
TIGR03548	323	TIGR03548, mutarot_permut, cyclically-permuted mut	6e-04
PHA03098	534	PHA03098, PHA03098, kelch-like protein; Provisiona	0.001
COG3055	381	COG3055, COG3055, Uncharacterized protein conserve	0.001

>gnl|CDD|177844 PLN02193, PLN02193, nitrile-specifier protein

 Score = 65.0 bits (158), Expect = 5e-12
 Identities = 55/191 (28%), Positives = 82/191 (42%), Gaps = 32/191 (16%)

Query: 72  GQKFVFGSPKALDHLILMNLFVSAPGAPP----------------PRCSHQMVALSADKG 115
           G K V    ++ D L  +  ++S P  P                  RCSH +  +     
Sbjct: 120 GGKIVGFHGRSTDVLHSLGAYISLPSTPKLLGKWIKVEQKGEGPGLRCSHGIAQVG---N 176

Query: 116 QLWMFGGEFSSASESQFHHYKDLWVFRMGEKKWEKIVCKDTPPSRS--GHRMIALKKHLV 173
           +++ FGGEF+       H    L+VF +  + W         P  S  G RM+++   L 
Sbjct: 177 KIYSFGGEFTPNQPIDKH----LYVFDLETRTWSISPATGDVPHLSCLGVRMVSIGSTLY 232

Query: 174 VFGGFHDNLREA-KYYNDVHIFDLETYAWKKIEPLGAGPAPRSGCQMAATPDGKILISGG 232
           VFGG     R+A + YN  + FD  T  WK + P+  GP PRS   MAA  +  + + GG
Sbjct: 233 VFGG-----RDASRQYNGFYSFDTTTNEWKLLTPVEEGPTPRSFHSMAADEE-NVYVFGG 286

Query: 233 YSKQSVKKDVD 243
            S  +  K +D
Sbjct: 287 VSATARLKTLD 297

Length = 470

>gnl|CDD|177814 PLN02153, PLN02153, epithiospecifier protein

 Score = 59.6 bits (144), Expect = 3e-10
 Identities = 45/146 (30%), Positives = 65/146 (44%), Gaps = 16/146 (10%)

Query: 99  PPPRCSHQMVALSADKGQLWMFGGEFSSASESQFHHYKDLWVFRMGEKKWEKIVCKDTPP 158
           P PRCSH + A+  DK  L+ FGGE         H  KDL+VF      W         P
Sbjct: 20  PGPRCSHGI-AVVGDK--LYSFGGELK----PNEHIDKDLYVFDFNTHTWSIAPANGDVP 72

Query: 159 SRS--GHRMIALKKHLVVFGGFHDNLREAKYYNDVHIFDLETYAWKKIEPLG--AGPAPR 214
             S  G RM+A+   L +FGG  +     + ++D + +D     W  +  L    GP  R
Sbjct: 73  RISCLGVRMVAVGTKLYIFGGRDEK----REFSDFYSYDTVKNEWTFLTKLDEEGGPEAR 128

Query: 215 SGCQMAATPDGKILISGGYSKQSVKK 240
           +   MA+  +  + + GG SK  + K
Sbjct: 129 TFHSMASD-ENHVYVFGGVSKGGLMK 153

Length = 341

>gnl|CDD|222113 pfam13415, Kelch_3, Galactose oxidase, central domain

 Score = 43.0 bits (102), Expect = 3e-06
 Identities = 17/53 (32%), Positives = 25/53 (47%), Gaps = 6/53 (11%)

Query: 169 KKHLVVFGGFHDNLREAKYYNDVHIFDLETYAWKKIEPLGAGPAPRSGCQMAA 221
              + VFGG  D        ND+ ++DL+T  W+K+   G  P PR+G     
Sbjct: 1   GGKIYVFGGLGDG---GTRLNDLWVYDLDTNTWEKL---GDLPGPRAGHAATV 47

Length = 48

>gnl|CDD|206134 pfam13964, Kelch_6, Kelch motif

 Score = 42.4 bits (100), Expect = 5e-06
 Identities = 20/55 (36%), Positives = 33/55 (60%), Gaps = 6/55 (10%)

Query: 160 RSGHRMIALKKHLVVFGGFHDNLREAKYYNDVHIFDLETYAWKKIEPLGAGPAPR 214
           R+GH  +++   + VFGG+ +    +K  N V ++D ET +W+K+ PL   P PR
Sbjct: 2   RTGHSAVSVGGKIYVFGGYSNG---SKASNKVLVYDPETGSWEKLPPL---PTPR 50

Length = 50

>gnl|CDD|237617 PRK14131, PRK14131, N-acetylneuraminic acid mutarotase; Provisional

 Score = 46.5 bits (111), Expect = 6e-06
 Identities = 26/97 (26%), Positives = 40/97 (41%), Gaps = 11/97 (11%)

Query: 145 EKKWEKIVCKDTP-PSRSGHRMIALKKHLVVFGGFHDNLREAK--YYNDVHIFDLETYAW 201
            K W KI     P   R       +   L VFGG      E     ++DV+ +D +T +W
Sbjct: 61  SKGWTKI--AAFPGGPREQAVAAFIDGKLYVFGGIGKTNSEGSPQVFDDVYKYDPKTNSW 118

Query: 202 KKIEPLGAGPAPRS--GCQMAATPDGKILISGGYSKQ 236
           +K+       +P    G    +  +GK  I+GG +K 
Sbjct: 119 QKL----DTRSPVGLAGHVAVSLHNGKAYITGGVNKN 151

Length = 376

>gnl|CDD|234253 TIGR03547, muta_rot_YjhT, mutatrotase, YjhT family

 Score = 46.2 bits (110), Expect = 8e-06
 Identities = 25/95 (26%), Positives = 45/95 (47%), Gaps = 9/95 (9%)

Query: 145 EKKWEKIVCKDTP-PSRSGHRMIALKKHLVVFGGF--HDNLREAKYYNDVHIFDLETYAW 201
            K W+KI   D P   R+     A+   L VFGG    ++    + ++DV+ +D +  +W
Sbjct: 40  SKGWQKI--ADFPGGPRNQAVAAAIDGKLYVFGGIGKANSEGSPQVFDDVYRYDPKKNSW 97

Query: 202 KKIE-PLGAGPAPRSGCQMAATPDGKILISGGYSK 235
           +K++     G    SG  +    +G+   +GG +K
Sbjct: 98  QKLDTRSPVGLLGASGFSLH---NGQAYFTGGVNK 129

Members of this protein family contain multiple copies of the beta-propeller-forming Kelch repeat. All are full-length homologs to YjhT of Escherichia coli, which has been identified as a mutarotase for sialic acid. This protein improves bacterial ability to obtain host sialic acid, and thus serves as a virulence factor. Some bacteria carry what appears to be a cyclically permuted homolog of this protein. Length = 346

>gnl|CDD|222419 pfam13854, Kelch_5, Kelch motif

 Score = 41.8 bits (99), Expect = 8e-06
 Identities = 8/43 (18%), Positives = 19/43 (44%), Gaps = 2/43 (4%)

Query: 156 TPPSRSGHRMIALKKHLVVFGGFHDNLREAKYYNDVHIFDLET 198
            P  R+ H  + +   + ++GG+       +  +DV++  L  
Sbjct: 1   LPVPRANHCAVVVGGEIYLYGGY--TSGNGQSSDDVYVLSLPG 41

The kelch motif was initially discovered in Kelch. In this protein there are six copies of the motif. It has been shown that the Drosophila ring canal kelch protein is related to Galactose Oxidase for which a structure has been solved. The kelch motif forms a beta sheet. Several of these sheets associate to form a beta propeller structure as found in pfam00064, pfam00400 and pfam00415. Length = 42

>gnl|CDD|222113 pfam13415, Kelch_3, Galactose oxidase, central domain

 Score = 39.6 bits (93), Expect = 6e-05
 Identities = 16/55 (29%), Positives = 26/55 (47%), Gaps = 7/55 (12%)

Query: 114 KGQLWMFGGEFSSASESQFHHYKDLWVFRMGEKKWEKIVCKDTPPSRSGHRMIAL 168
            G++++FGG     +        DLWV+ +    WEK+   D P  R+GH    +
Sbjct: 1   GGKIYVFGGLGDGGT-----RLNDLWVYDLDTNTWEKL--GDLPGPRAGHAATVI 48

Length = 48

>gnl|CDD|201739 pfam01344, Kelch_1, Kelch motif

 Score = 38.4 bits (90), Expect = 1e-04
 Identities = 13/49 (26%), Positives = 23/49 (46%), Gaps = 4/49 (8%)

Query: 160 RSGHRMIALKKHLVVFGGFHDNLREAKYYNDVHIFDLETYAWKKIEPLG 208
           RSG  ++ L   + V GG+       +  + V ++D ET  W K+  + 
Sbjct: 2   RSGAGVVVLGGKIYVIGGYDGG----QSLSSVEVYDPETNTWSKLPSMP 46

The kelch motif was initially discovered in Kelch. In this protein there are six copies of the motif. It has been shown that the Drosophila ring canal kelch protein is related to Galactose Oxidase, for which a structure has been solved. The kelch motif forms a beta sheet. Several of these sheets associate to form a beta propeller structure as found in pfam00064, pfam00400 and pfam00415. Length = 46

>gnl|CDD|116261 pfam07646, Kelch_2, Kelch motif

 Score = 38.5 bits (90), Expect = 1e-04
 Identities = 12/50 (24%), Positives = 20/50 (40%), Gaps = 2/50 (4%)

Query: 159 SRSGHRMIALKKHLVVFGGFHDNLREAKYYNDVHIFDLETYAWKKIEPLG 208
            R  H  + +   L V GG       +   +D+ + D ET  W ++  L 
Sbjct: 1   PRYPHASVVVGGKLYVVGGSTGLGDLSS--SDLWVLDPETNVWTELPALP 48

The kelch motif was initially discovered in Kelch. In this protein there are six copies of the motif. It has been shown that Drosophila ring canal kelch protein is related to Galactose Oxidase for which a structure has been solved. The kelch motif forms a beta sheet. Several of these sheets associate to form a beta propeller structure as found in pfam00064, pfam00400 and pfam00415. Length = 48

>gnl|CDD|177844 PLN02193, PLN02193, nitrile-specifier protein

 Score = 41.5 bits (97), Expect = 2e-04
 Identities = 49/168 (29%), Positives = 75/168 (44%), Gaps = 24/168 (14%)

Query: 99  PPPRCSHQMVALSADKGQLWMFGGEFSSASESQFHHYKDLWVFRMGEKKWEKIVCK---D 155
           P PR  H M   +AD+  +++FGG  ++A        K L  + + +KKW    C    D
Sbjct: 266 PTPRSFHSM---AADEENVYVFGGVSATA------RLKTLDSYNIVDKKW--FHCSTPGD 314

Query: 156 TPPSRSGHRMIALKKHLVVFGGFHDNLREAKYYNDVHIFDLETYAWKKIEPLGAGPAPRS 215
           +   R G  +  ++  + V  GF+         +DVH +D     W ++E  G  P+ RS
Sbjct: 315 SFSIRGGAGLEVVQGKVWVVYGFN-----GCEVDDVHYYDPVQDKWTQVETFGVRPSERS 369

Query: 216 GCQMAATPDGK-ILISGGYSKQSVKKDVDKGIVHTDTFLLTPDSKTLR 262
               AA   GK I+I GG         V  G +   TF L  D++TL+
Sbjct: 370 VFASAAV--GKHIVIFGGEIAMDPLAHVGPGQLTDGTFAL--DTETLQ 413

Length = 470

>gnl|CDD|205596 pfam13418, Kelch_4, Galactose oxidase, central domain

 Score = 38.4 bits (90), Expect = 2e-04
 Identities = 15/51 (29%), Positives = 24/51 (47%), Gaps = 7/51 (13%)

Query: 101 PRCSHQMVALSADKGQLWMFGGEFSSASESQFHHYKDLWVFRMGEKKWEKI 151
           PR  H   ++    G+L++FGGE    S        D+WVF +    W ++
Sbjct: 1   PRAYHTSTSI--GDGRLYLFGGENEDGSV-----LSDVWVFDLSTNTWTRL 44

Length = 49

>gnl|CDD|205596 pfam13418, Kelch_4, Galactose oxidase, central domain

 Score = 38.0 bits (89), Expect = 2e-04
 Identities = 14/49 (28%), Positives = 25/49 (51%), Gaps = 4/49 (8%)

Query: 160 RSGHRMIALKKH-LVVFGGFHDNLREAKYYNDVHIFDLETYAWKKIEPL 207
           R+ H   ++    L +FGG +++       +DV +FDL T  W ++  L
Sbjct: 2   RAYHTSTSIGDGRLYLFGGENED---GSVLSDVWVFDLSTNTWTRLPSL 47

Length = 49

>gnl|CDD|177814 PLN02153, PLN02153, epithiospecifier protein

 Score = 40.4 bits (94), Expect = 6e-04
 Identities = 43/189 (22%), Positives = 74/189 (39%), Gaps = 24/189 (12%)

Query: 60  DQLILFGGEF-----YDGQKFVFGSPKALDHLILMNLFVSAPGAPPPRCSHQMVALSADK 114
           D+L  FGGE       D   +VF               ++      PR S   V + A  
Sbjct: 33  DKLYSFGGELKPNEHIDKDLYVF-------DFNTHTWSIAPANGDVPRISCLGVRMVAVG 85

Query: 115 GQLWMFGGEFSSASESQFHHY---KDLWVFRMGEKKWEKIVCKDTPPSRSGHRMIALKKH 171
            +L++FGG       S F+ Y   K+ W F        K+  +  P +R+ H M + + H
Sbjct: 86  TKLYIFGGRDEKREFSDFYSYDTVKNEWTF------LTKLDEEGGPEARTFHSMASDENH 139

Query: 172 LVVFGGFHDN--LREAKYYNDVHIFDLETYAWKKIEPLGAGPAPRSGCQMAATPDGKILI 229
           + VFGG      ++  + +  +  +++    W ++   G     R G   A    GKI +
Sbjct: 140 VYVFGGVSKGGLMKTPERFRTIEAYNIADGKWVQLPDPGENFEKRGGAGFAVV-QGKIWV 198

Query: 230 SGGYSKQSV 238
             G++   +
Sbjct: 199 VYGFATSIL 207

Length = 341

>gnl|CDD|211835 TIGR03548, mutarot_permut, cyclically-permuted mutarotase family protein

 Score = 40.1 bits (94), Expect = 6e-04
 Identities = 32/141 (22%), Positives = 59/141 (41%), Gaps = 20/141 (14%)

Query: 101 PRCSHQMVALSADK--GQLWMFGGEFSSASESQFHHYKDLWVFRMGEKKWEKIVCKDTPP 158
           P     M   SA    G+L++ GG  +    ++F      + F +  ++WE++   D P 
Sbjct: 108 PSLPFAMDNGSATYKDGKLYVGGGNANGKPSNKF------YCFNLETQEWEEL--PDFPG 159

Query: 159 S-RSGHRMIALKKHLVVFGGFHDNLREAKYYNDVHIFDLETYAWKKIEPLGAGPAPRS-- 215
           + R     + L+  L VFGG      +   Y D + +  +T  W+K+    +   P S  
Sbjct: 160 APRVQPVCVKLQNELYVFGG-----GDNIAYTDGYKYSPKTGTWEKVADPLSDGEPISLL 214

Query: 216 -GCQMAATPDGKILISGGYSK 235
               +A   +  +L  GG++ 
Sbjct: 215 GAASIAIN-ESLLLCIGGFNY 234

Members of this protein family show essentially full-length homology, cyclically permuted, to YjhT from Escherichia coli. YjhT was shown to act as a mutarotase for sialic acid, and by this ability to be able to act as a virulence factor. Members of the YjhT family (TIGR03547) and this cyclically-permuted family have multiple repeats of the beta-propeller-forming Kelch repeat. Length = 323

>gnl|CDD|222983 PHA03098, PHA03098, kelch-like protein; Provisional

 Score = 39.8 bits (93), Expect = 0.001
 Identities = 34/128 (26%), Positives = 51/128 (39%), Gaps = 17/128 (13%)

Query: 108 VALSADKGQLWMFGGEFSSASESQFHHYKDLWVFRMGEKKWEKIVCKDTPPSRSGHRMIA 167
             ++    ++++ GG ++S S +      + W    GE KW +      P  R    ++ 
Sbjct: 336 PGVTVFNNRIYVIGGIYNSISLNTV----ESWKP--GESKWREEPPLIFP--RYNPCVVN 387

Query: 168 LKKHLVVFGGFHDNLREAKYYNDVHIFDLETYAWKKIEPLGAGPAPRS-GCQMAATPDGK 226
           +   + V GG   N    +    V  F L T  W K  PL   P     GC  A   DGK
Sbjct: 388 VNNLIYVIGGISKN---DELLKTVECFSLNTNKWSKGSPL---PISHYGGC--AIYHDGK 439

Query: 227 ILISGGYS 234
           I + GG S
Sbjct: 440 IYVIGGIS 447

Length = 534

>gnl|CDD|225597 COG3055, COG3055, Uncharacterized protein conserved in bacteria [Function unknown]

 Score = 39.3 bits (92), Expect = 0.001
 Identities = 24/96 (25%), Positives = 41/96 (42%), Gaps = 10/96 (10%)

Query: 144 GEKKWEKIVCKDTP-PSRSGHRMIALKKHLVVFGGFHDNL-REAKYYNDVHIFDLETYAW 201
             K W KI   D P  +R+      +   L VFGG+  ++    + +ND + +D  T +W
Sbjct: 68  PGKGWTKI--ADFPGGARNQAVAAVIGGKLYVFGGYGKSVSSSPQVFNDAYRYDPSTNSW 125

Query: 202 KKIEPLGAGPAPR--SGCQMAATPDGKILISGGYSK 235
            K++      +P    G    +    KI   GG ++
Sbjct: 126 HKLDTR----SPTGLVGASTFSLNGTKIYFFGGVNQ 157

Length = 381

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	265
KOG1230|consensus	521		100.0
KOG4441|consensus	571		100.0
PLN02153	341	epithiospecifier protein	100.0
KOG4441|consensus	571		100.0
PLN02193	470	nitrile-specifier protein	100.0
PHA02713	557	hypothetical protein; Provisional	100.0
PHA02713	557	hypothetical protein; Provisional	100.0
PHA03098	534	kelch-like protein; Provisional	100.0
PHA02790	480	Kelch-like protein; Provisional	100.0
TIGR03548	323	mutarot_permut cyclically-permuted mutatrotase fam	100.0
PLN02153	341	epithiospecifier protein	100.0
PLN02193	470	nitrile-specifier protein	100.0
TIGR03548	323	mutarot_permut cyclically-permuted mutatrotase fam	99.97
KOG1230|consensus	521		99.97
KOG4693|consensus	392		99.97
PHA03098	534	kelch-like protein; Provisional	99.97
KOG4693|consensus	392		99.97
KOG4152|consensus	830		99.96
KOG0379|consensus	482		99.96
TIGR03547	346	muta_rot_YjhT mutatrotase, YjhT family. Members of	99.96
PRK14131	376	N-acetylneuraminic acid mutarotase; Provisional	99.96
KOG0379|consensus	482		99.96
TIGR03547	346	muta_rot_YjhT mutatrotase, YjhT family. Members of	99.96
PRK14131	376	N-acetylneuraminic acid mutarotase; Provisional	99.95
PHA02790	480	Kelch-like protein; Provisional	99.95
KOG4152|consensus	830		99.91
KOG2437|consensus	723		99.67
COG3055	381	Uncharacterized protein conserved in bacteria [Fun	99.52
COG3055	381	Uncharacterized protein conserved in bacteria [Fun	99.49
KOG2437|consensus	723		99.37
PF13964	50	Kelch_6: Kelch motif	99.3
PF13964	50	Kelch_6: Kelch motif	99.23
PLN02772	398	guanylate kinase	99.08
PF01344	47	Kelch_1: Kelch motif; InterPro: IPR006652 Kelch is	99.06
PF13415	49	Kelch_3: Galactose oxidase, central domain	99.06
PF07646	49	Kelch_2: Kelch motif; InterPro: IPR011498 Kelch is	99.06
PF01344	47	Kelch_1: Kelch motif; InterPro: IPR006652 Kelch is	99.05
PF13418	49	Kelch_4: Galactose oxidase, central domain; PDB: 2	99.01
PF13415	49	Kelch_3: Galactose oxidase, central domain	98.99
PF13418	49	Kelch_4: Galactose oxidase, central domain; PDB: 2	98.97
PF07646	49	Kelch_2: Kelch motif; InterPro: IPR011498 Kelch is	98.97
PLN02772	398	guanylate kinase	98.9
PF13854	42	Kelch_5: Kelch motif	98.81
smart00612	47	Kelch Kelch domain.	98.72
PF13854	42	Kelch_5: Kelch motif	98.69
smart00612	47	Kelch Kelch domain.	98.61
PF03089	337	RAG2: Recombination activating protein 2; InterPro	98.6
PF07250	243	Glyoxal_oxid_N: Glyoxal oxidase N-terminus; InterP	98.02
PF03089	337	RAG2: Recombination activating protein 2; InterPro	97.87
PF07250	243	Glyoxal_oxid_N: Glyoxal oxidase N-terminus; InterP	97.77
TIGR01640	230	F_box_assoc_1 F-box protein interaction domain. Th	97.28
TIGR01640	230	F_box_assoc_1 F-box protein interaction domain. Th	96.98
PF07893	342	DUF1668: Protein of unknown function (DUF1668); In	96.75
PF07893	342	DUF1668: Protein of unknown function (DUF1668); In	96.38
PF12768	281	Rax2: Cortical protein marker for cell polarity	96.33
KOG2055|consensus	514		95.88
PRK11138	394	outer membrane biogenesis protein BamB; Provisiona	95.38
PRK11138	394	outer membrane biogenesis protein BamB; Provisiona	95.36
cd00094	194	HX Hemopexin-like repeats.; Hemopexin is a heme-bi	95.13
PF12217	367	End_beta_propel: Catalytic beta propeller domain o	94.25
KOG2055|consensus	514		94.22
PF13360	238	PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A	93.81
PF12768	281	Rax2: Cortical protein marker for cell polarity	93.22
cd00094	194	HX Hemopexin-like repeats.; Hemopexin is a heme-bi	92.57
PF05096	264	Glu_cyclase_2: Glutamine cyclotransferase; InterPr	92.15
PRK13684	334	Ycf48-like protein; Provisional	91.52
PF02191	250	OLF: Olfactomedin-like domain; InterPro: IPR003112	91.37
PRK04792	448	tolB translocation protein TolB; Provisional	91.05
TIGR03075	527	PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methan	91.03
PF10282	345	Lactonase: Lactonase, 7-bladed beta-propeller; Int	89.52
PRK04792	448	tolB translocation protein TolB; Provisional	89.07
PF08268	129	FBA_3: F-box associated domain; InterPro: IPR01318	88.71
KOG0310|consensus	487		88.14
TIGR03300	377	assembly_YfgL outer membrane assembly lipoprotein	86.67
PF08268	129	FBA_3: F-box associated domain; InterPro: IPR01318	86.53
PF10282	345	Lactonase: Lactonase, 7-bladed beta-propeller; Int	86.22
TIGR03300	377	assembly_YfgL outer membrane assembly lipoprotein	85.51
TIGR02800	417	propeller_TolB tol-pal system beta propeller repea	85.26
TIGR03866	300	PQQ_ABC_repeats PQQ-dependent catabolism-associate	83.54
PRK00178	430	tolB translocation protein TolB; Provisional	82.62
PRK11028	330	6-phosphogluconolactonase; Provisional	81.07
PF05096	264	Glu_cyclase_2: Glutamine cyclotransferase; InterPr	81.03
PRK11028	330	6-phosphogluconolactonase; Provisional	80.16

>KOG1230|consensus

Probab=100.00  E-value=1.4e-36  Score=243.22  Aligned_cols=226  Identities=55%  Similarity=1.029  Sum_probs=203.1

Q ss_pred             HHHHhhcccc-eEEEeccCCCCCCCceeeEEecCCCEEEEECcEEeCCCceeeCCCcccCceEEEEe----eecC--CCC
Q psy14331         26 DIEAEEKRKN-KVIEKVVPEPTRRANFSFLAHPDKDQLILFGGEFYDGQKFVFGSPKALDHLILMNL----FVSA--PGA   98 (265)
Q Consensus        26 ~~~~~d~~~~-~w~~~~~~~p~~r~~~~~~~~~~~~~lyv~GG~~~~~~~~~~~~~~~~~~~~~yd~----w~~~--~~~   98 (265)
                      .+..++.... .-....+++|.||...++++.|..+.|++|||..+++....+     .+++++||.    |...  ++.
T Consensus        44 ~iq~~eaK~~e~~~e~~~~~PspRsn~sl~~nPekeELilfGGEf~ngqkT~v-----YndLy~Yn~k~~eWkk~~spn~  118 (521)
T KOG1230|consen   44 IIQSLEAKQIEHVVETSVPPPSPRSNPSLFANPEKEELILFGGEFYNGQKTHV-----YNDLYSYNTKKNEWKKVVSPNA  118 (521)
T ss_pred             HHHhhhhhccceeeeccCCCCCCCCCcceeeccCcceeEEecceeecceeEEE-----eeeeeEEeccccceeEeccCCC
Confidence            3445555442 223335689999999999999999999999999999999988     999999999    7654  667


Q ss_pred             CCCccccceEEEecCCCEEEEEcCcccCCCccccccCCceeEEEcCCCcEEEEecCCCCCCCcCceEEEECCEEEEEcCc
Q psy14331         99 PPPRCSHQMVALSADKGQLWMFGGEFSSASESQFHHYKDLWVFRMGEKKWEKIVCKDTPPSRSGHRMIALKKHLVVFGGF  178 (265)
Q Consensus        99 p~~r~~~~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~~~yd~~~~~W~~~~~~~~p~~~~~~~~~~~~~~iyv~GG~  178 (265)
                      |.||++|++++++  .+.+|++||........+|.+..++|+||..+++|+++...+.|.+|.+|.|++...+|+||||+
T Consensus       119 P~pRsshq~va~~--s~~l~~fGGEfaSPnq~qF~HYkD~W~fd~~trkweql~~~g~PS~RSGHRMvawK~~lilFGGF  196 (521)
T KOG1230|consen  119 PPPRSSHQAVAVP--SNILWLFGGEFASPNQEQFHHYKDLWLFDLKTRKWEQLEFGGGPSPRSGHRMVAWKRQLILFGGF  196 (521)
T ss_pred             cCCCccceeEEec--cCeEEEeccccCCcchhhhhhhhheeeeeeccchheeeccCCCCCCCccceeEEeeeeEEEEcce
Confidence            8999999999986  68999999999888888899999999999999999999988889999999999999999999999


Q ss_pred             cCCCCccccCCceEEEEcCCCceEEeccCCCCCCCCCCceEEEeCCCeEEEEcCccccccccccccceeeceEEEEecCc
Q psy14331        179 HDNLREAKYYNDVHIFDLETYAWKKIEPLGAGPAPRSGCQMAATPDGKILISGGYSKQSVKKDVDKGIVHTDTFLLTPDS  258 (265)
Q Consensus       179 ~~~~~~~~~~~~v~~y~~~~~~W~~~~~~~~~p~~~~~~~~~~~~~~~iyi~GG~~~~~~~~~~~~~~~~~~~w~~~~~~  258 (265)
                      ......+.|+|+||+||+++-+|.++.+.+-.|.+|++|.+.+..++.|||.||++......+++.....+|+|.++++.
T Consensus       197 hd~nr~y~YyNDvy~FdLdtykW~Klepsga~PtpRSGcq~~vtpqg~i~vyGGYsK~~~kK~~dKG~~hsDmf~L~p~~  276 (521)
T KOG1230|consen  197 HDSNRDYIYYNDVYAFDLDTYKWSKLEPSGAGPTPRSGCQFSVTPQGGIVVYGGYSKQRVKKDVDKGTRHSDMFLLKPED  276 (521)
T ss_pred             ecCCCceEEeeeeEEEeccceeeeeccCCCCCCCCCCcceEEecCCCcEEEEcchhHhhhhhhhhcCceeeeeeeecCCc
Confidence            98888889999999999999999999998778999999999888899999999999877788899999999999999988

>KOG4441|consensus

Probab=100.00  E-value=1.2e-36  Score=266.45  Aligned_cols=218  Identities=23%  Similarity=0.387  Sum_probs=191.3

Q ss_pred             eeeeecccccHHHHHHHHHHhhcccceEEEeccCCCCCCCceeeEEecCCCEEEEECcEEeCCCceeeCCCcccCceEEE
Q psy14331         10 MSWTIMFNEDIEKIVRDIEAEEKRKNKVIEKVVPEPTRRANFSFLAHPDKDQLILFGGEFYDGQKFVFGSPKALDHLILM   89 (265)
Q Consensus        10 ~~~~~~~~~~~~~~~~~~~~~d~~~~~w~~~~~~~p~~r~~~~~~~~~~~~~lyv~GG~~~~~~~~~~~~~~~~~~~~~y   89 (265)
                      .+|..+|.++....++.++.||+.+++|.. .++|+.+|..++++++  ++.||++||.  ++...       ++++++|
T Consensus       334 ~lYv~GG~~~~~~~l~~ve~YD~~~~~W~~-~a~M~~~R~~~~v~~l--~g~iYavGG~--dg~~~-------l~svE~Y  401 (571)
T KOG4441|consen  334 KLYVVGGYDSGSDRLSSVERYDPRTNQWTP-VAPMNTKRSDFGVAVL--DGKLYAVGGF--DGEKS-------LNSVECY  401 (571)
T ss_pred             EEEEEccccCCCcccceEEEecCCCCceec-cCCccCccccceeEEE--CCEEEEEecc--ccccc-------cccEEEe
Confidence            344444444256788999999999999999 9999999999999997  9999999995  44433       7999999


Q ss_pred             Ee----eecCCCCCCCccccceEEEecCCCEEEEEcCcccCCCccccccCCceeEEEcCCCcEEEEecCCCCCCCcCceE
Q psy14331         90 NL----FVSAPGAPPPRCSHQMVALSADKGQLWMFGGEFSSASESQFHHYKDLWVFRMGEKKWEKIVCKDTPPSRSGHRM  165 (265)
Q Consensus        90 d~----w~~~~~~p~~r~~~~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~~~yd~~~~~W~~~~~~~~p~~~~~~~~  165 (265)
                      |+    |...++|+.+|++|+++++   +++||++||......     .++++++|||.+++|+.+++|.  .+|.++++
T Consensus       402 Dp~~~~W~~va~m~~~r~~~gv~~~---~g~iYi~GG~~~~~~-----~l~sve~YDP~t~~W~~~~~M~--~~R~~~g~  471 (571)
T KOG4441|consen  402 DPVTNKWTPVAPMLTRRSGHGVAVL---GGKLYIIGGGDGSSN-----CLNSVECYDPETNTWTLIAPMN--TRRSGFGV  471 (571)
T ss_pred             cCCCCcccccCCCCcceeeeEEEEE---CCEEEEEcCcCCCcc-----ccceEEEEcCCCCceeecCCcc--cccccceE
Confidence            99    9999999999999999998   999999999865541     4899999999999999999985  89999999


Q ss_pred             EEECCEEEEEcCccCCCCccccCCceEEEEcCCCceEEeccCCCCCCCCCCceEEEeCCCeEEEEcCccccccccccccc
Q psy14331        166 IALKKHLVVFGGFHDNLREAKYYNDVHIFDLETYAWKKIEPLGAGPAPRSGCQMAATPDGKILISGGYSKQSVKKDVDKG  245 (265)
Q Consensus       166 ~~~~~~iyv~GG~~~~~~~~~~~~~v~~y~~~~~~W~~~~~~~~~p~~~~~~~~~~~~~~~iyi~GG~~~~~~~~~~~~~  245 (265)
                      ++++++||++||.++.    ....++++|||.+++|+.+.++   +.+|..++++++ ++++|++||++.....++++.|
T Consensus       472 a~~~~~iYvvGG~~~~----~~~~~VE~ydp~~~~W~~v~~m---~~~rs~~g~~~~-~~~ly~vGG~~~~~~l~~ve~y  543 (571)
T KOG4441|consen  472 AVLNGKIYVVGGFDGT----SALSSVERYDPETNQWTMVAPM---TSPRSAVGVVVL-GGKLYAVGGFDGNNNLNTVECY  543 (571)
T ss_pred             EEECCEEEEECCccCC----CccceEEEEcCCCCceeEcccC---ccccccccEEEE-CCEEEEEecccCccccceeEEc
Confidence            9999999999999883    3367799999999999999885   778888888777 9999999999999989999999


Q ss_pred             eeeceEEEEecC
Q psy14331        246 IVHTDTFLLTPD  257 (265)
Q Consensus       246 ~~~~~~w~~~~~  257 (265)
                      +|..|.|...+.
T Consensus       544 dp~~d~W~~~~~  555 (571)
T KOG4441|consen  544 DPETDTWTEVTE  555 (571)
T ss_pred             CCCCCceeeCCC
Confidence            999999988877

>PLN02153 epithiospecifier protein

Probab=100.00  E-value=1.5e-35  Score=247.62  Aligned_cols=226  Identities=18%  Similarity=0.295  Sum_probs=170.1

Q ss_pred             HHHHHHHhhcccceEEEeccCCCCCC---CceeeEEecCCCEEEEECcEEeCCCceeeCCCcccCceEEEEe----eecC
Q psy14331         23 IVRDIEAEEKRKNKVIEKVVPEPTRR---ANFSFLAHPDKDQLILFGGEFYDGQKFVFGSPKALDHLILMNL----FVSA   95 (265)
Q Consensus        23 ~~~~~~~~d~~~~~w~~~~~~~p~~r---~~~~~~~~~~~~~lyv~GG~~~~~~~~~~~~~~~~~~~~~yd~----w~~~   95 (265)
                      ..++++.||+.+++|..+.+..+.||   .+|+++++  +++||+|||..  ....       ++++++||+    |...
T Consensus        48 ~~~~~~~yd~~~~~W~~~~~~~~~p~~~~~~~~~~~~--~~~iyv~GG~~--~~~~-------~~~v~~yd~~t~~W~~~  116 (341)
T PLN02153         48 IDKDLYVFDFNTHTWSIAPANGDVPRISCLGVRMVAV--GTKLYIFGGRD--EKRE-------FSDFYSYDTVKNEWTFL  116 (341)
T ss_pred             eeCcEEEEECCCCEEEEcCccCCCCCCccCceEEEEE--CCEEEEECCCC--CCCc-------cCcEEEEECCCCEEEEe
Confidence            45689999999999988433222333   36777776  99999999953  2221       689999999    9988


Q ss_pred             CCC-----CCCccccceEEEecCCCEEEEEcCcccCCCccccccCCceeEEEcCCCcEEEEecCC-CCCCCcCceEEEEC
Q psy14331         96 PGA-----PPPRCSHQMVALSADKGQLWMFGGEFSSASESQFHHYKDLWVFRMGEKKWEKIVCKD-TPPSRSGHRMIALK  169 (265)
Q Consensus        96 ~~~-----p~~r~~~~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~~~yd~~~~~W~~~~~~~-~p~~~~~~~~~~~~  169 (265)
                      ++|     |.+|..|+++++   +++|||+||............++++++||+++++|+.++.+. .|.+|..|++++++
T Consensus       117 ~~~~~~~~p~~R~~~~~~~~---~~~iyv~GG~~~~~~~~~~~~~~~v~~yd~~~~~W~~l~~~~~~~~~r~~~~~~~~~  193 (341)
T PLN02153        117 TKLDEEGGPEARTFHSMASD---ENHVYVFGGVSKGGLMKTPERFRTIEAYNIADGKWVQLPDPGENFEKRGGAGFAVVQ  193 (341)
T ss_pred             ccCCCCCCCCCceeeEEEEE---CCEEEEECCccCCCccCCCcccceEEEEECCCCeEeeCCCCCCCCCCCCcceEEEEC
Confidence            776     889999999877   899999999864322111123578999999999999998765 45789999999999


Q ss_pred             CEEEEEcCccCC----CCccccCCceEEEEcCCCceEEeccCCCCCCCCCCceEEEeCCCeEEEEcCccccccccccccc
Q psy14331        170 KHLVVFGGFHDN----LREAKYYNDVHIFDLETYAWKKIEPLGAGPAPRSGCQMAATPDGKILISGGYSKQSVKKDVDKG  245 (265)
Q Consensus       170 ~~iyv~GG~~~~----~~~~~~~~~v~~y~~~~~~W~~~~~~~~~p~~~~~~~~~~~~~~~iyi~GG~~~~~~~~~~~~~  245 (265)
                      ++|||+||....    +......+++++||+.+++|+++...+..|.+|..|+++++ +++|||+||.............
T Consensus       194 ~~iyv~GG~~~~~~~gG~~~~~~~~v~~yd~~~~~W~~~~~~g~~P~~r~~~~~~~~-~~~iyv~GG~~~~~~~~~~~~~  272 (341)
T PLN02153        194 GKIWVVYGFATSILPGGKSDYESNAVQFFDPASGKWTEVETTGAKPSARSVFAHAVV-GKYIIIFGGEVWPDLKGHLGPG  272 (341)
T ss_pred             CeEEEEeccccccccCCccceecCceEEEEcCCCcEEeccccCCCCCCcceeeeEEE-CCEEEEECcccCCccccccccc
Confidence            999999997421    11112257899999999999999887667889999998877 8999999997533211111112


Q ss_pred             eeeceEEEEecCcccccc
Q psy14331        246 IVHTDTFLLTPDSKTLRS  263 (265)
Q Consensus       246 ~~~~~~w~~~~~~~~w~~  263 (265)
                      ...+++|.||+++++|+.
T Consensus       273 ~~~n~v~~~d~~~~~W~~  290 (341)
T PLN02153        273 TLSNEGYALDTETLVWEK  290 (341)
T ss_pred             cccccEEEEEcCccEEEe
Confidence            345689999999999974

>KOG4441|consensus

Probab=100.00  E-value=6.3e-36  Score=261.93  Aligned_cols=222  Identities=22%  Similarity=0.352  Sum_probs=189.0

Q ss_pred             eeccccc-HHHHHHHHHHhhcccceEEEeccCCCCCCCceeeEEecCCCEEEEECcEEeCCCceeeCCCcccCceEEEEe
Q psy14331         13 TIMFNED-IEKIVRDIEAEEKRKNKVIEKVVPEPTRRANFSFLAHPDKDQLILFGGEFYDGQKFVFGSPKALDHLILMNL   91 (265)
Q Consensus        13 ~~~~~~~-~~~~~~~~~~~d~~~~~w~~~~~~~p~~r~~~~~~~~~~~~~lyv~GG~~~~~~~~~~~~~~~~~~~~~yd~   91 (265)
                      +..|+.. ..+..+.+..||+.++.|.. .+++|.+|..++++++  +++||++||.+. +...       ++++++||+
T Consensus       288 ~~vGG~~~~~~~~~~ve~yd~~~~~w~~-~a~m~~~r~~~~~~~~--~~~lYv~GG~~~-~~~~-------l~~ve~YD~  356 (571)
T KOG4441|consen  288 VAVGGYNRQGQSLRSVECYDPKTNEWSS-LAPMPSPRCRVGVAVL--NGKLYVVGGYDS-GSDR-------LSSVERYDP  356 (571)
T ss_pred             EEECCCCCCCcccceeEEecCCcCcEee-cCCCCcccccccEEEE--CCEEEEEccccC-CCcc-------cceEEEecC
Confidence            3334433 35677889999999999999 8999999999999987  999999999532 2221       799999999


Q ss_pred             ----eecCCCCCCCccccceEEEecCCCEEEEEcCcccCCCccccccCCceeEEEcCCCcEEEEecCCCCCCCcCceEEE
Q psy14331         92 ----FVSAPGAPPPRCSHQMVALSADKGQLWMFGGEFSSASESQFHHYKDLWVFRMGEKKWEKIVCKDTPPSRSGHRMIA  167 (265)
Q Consensus        92 ----w~~~~~~p~~r~~~~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~~~yd~~~~~W~~~~~~~~p~~~~~~~~~~  167 (265)
                          |...++|+.+|..++++++   ++.||++||.+...      .++++++||+.+++|+.+++|.  .+|.+|++++
T Consensus       357 ~~~~W~~~a~M~~~R~~~~v~~l---~g~iYavGG~dg~~------~l~svE~YDp~~~~W~~va~m~--~~r~~~gv~~  425 (571)
T KOG4441|consen  357 RTNQWTPVAPMNTKRSDFGVAVL---DGKLYAVGGFDGEK------SLNSVECYDPVTNKWTPVAPML--TRRSGHGVAV  425 (571)
T ss_pred             CCCceeccCCccCccccceeEEE---CCEEEEEecccccc------ccccEEEecCCCCcccccCCCC--cceeeeEEEE
Confidence                9999999999999999999   99999999987443      4889999999999999999885  6999999999


Q ss_pred             ECCEEEEEcCccCCCCccccCCceEEEEcCCCceEEeccCCCCCCCCCCceEEEeCCCeEEEEcCcccccccccccccee
Q psy14331        168 LKKHLVVFGGFHDNLREAKYYNDVHIFDLETYAWKKIEPLGAGPAPRSGCQMAATPDGKILISGGYSKQSVKKDVDKGIV  247 (265)
Q Consensus       168 ~~~~iyv~GG~~~~~~~~~~~~~v~~y~~~~~~W~~~~~~~~~p~~~~~~~~~~~~~~~iyi~GG~~~~~~~~~~~~~~~  247 (265)
                      .+++||++||.+...   ..++++++|||.+++|+.++++   +.+|.+++++++ +++||++||.+......++++|++
T Consensus       426 ~~g~iYi~GG~~~~~---~~l~sve~YDP~t~~W~~~~~M---~~~R~~~g~a~~-~~~iYvvGG~~~~~~~~~VE~ydp  498 (571)
T KOG4441|consen  426 LGGKLYIIGGGDGSS---NCLNSVECYDPETNTWTLIAPM---NTRRSGFGVAVL-NGKIYVVGGFDGTSALSSVERYDP  498 (571)
T ss_pred             ECCEEEEEcCcCCCc---cccceEEEEcCCCCceeecCCc---ccccccceEEEE-CCEEEEECCccCCCccceEEEEcC
Confidence            999999999998764   2589999999999999999996   889999998877 999999999998655666788888


Q ss_pred             eceEEEEecCcccccc
Q psy14331        248 HTDTFLLTPDSKTLRS  263 (265)
Q Consensus       248 ~~~~w~~~~~~~~w~~  263 (265)
                      ..+.|..-..+..-|.
T Consensus       499 ~~~~W~~v~~m~~~rs  514 (571)
T KOG4441|consen  499 ETNQWTMVAPMTSPRS  514 (571)
T ss_pred             CCCceeEcccCccccc
Confidence            8888877665554443

>PLN02193 nitrile-specifier protein

Probab=100.00  E-value=2.7e-34  Score=248.51  Aligned_cols=215  Identities=22%  Similarity=0.331  Sum_probs=171.7

Q ss_pred             HHHHHHHhhcccceEEEecc--CCCC-CCCceeeEEecCCCEEEEECcEEeCCCceeeCCCcccCceEEEEe----eecC
Q psy14331         23 IVRDIEAEEKRKNKVIEKVV--PEPT-RRANFSFLAHPDKDQLILFGGEFYDGQKFVFGSPKALDHLILMNL----FVSA   95 (265)
Q Consensus        23 ~~~~~~~~d~~~~~w~~~~~--~~p~-~r~~~~~~~~~~~~~lyv~GG~~~~~~~~~~~~~~~~~~~~~yd~----w~~~   95 (265)
                      ..+++++||+.+++|..+..  .+|. +|.+|+++++  +++||+|||..  ...       .++++++||+    |...
T Consensus       191 ~~~~v~~yD~~~~~W~~~~~~g~~P~~~~~~~~~v~~--~~~lYvfGG~~--~~~-------~~ndv~~yD~~t~~W~~l  259 (470)
T PLN02193        191 IDKHLYVFDLETRTWSISPATGDVPHLSCLGVRMVSI--GSTLYVFGGRD--ASR-------QYNGFYSFDTTTNEWKLL  259 (470)
T ss_pred             eeCcEEEEECCCCEEEeCCCCCCCCCCcccceEEEEE--CCEEEEECCCC--CCC-------CCccEEEEECCCCEEEEc
Confidence            34679999999999987433  2344 3567887776  99999999953  221       1789999999    9988


Q ss_pred             CCC---CCCccccceEEEecCCCEEEEEcCcccCCCccccccCCceeEEEcCCCcEEEEecCC-CCCCCcCceEEEECCE
Q psy14331         96 PGA---PPPRCSHQMVALSADKGQLWMFGGEFSSASESQFHHYKDLWVFRMGEKKWEKIVCKD-TPPSRSGHRMIALKKH  171 (265)
Q Consensus        96 ~~~---p~~r~~~~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~~~yd~~~~~W~~~~~~~-~p~~~~~~~~~~~~~~  171 (265)
                      +++   |.+|..|+++++   +++|||+||.....      .++++++||+.+++|+.++... .|.+|..|++++++++
T Consensus       260 ~~~~~~P~~R~~h~~~~~---~~~iYv~GG~~~~~------~~~~~~~yd~~t~~W~~~~~~~~~~~~R~~~~~~~~~gk  330 (470)
T PLN02193        260 TPVEEGPTPRSFHSMAAD---EENVYVFGGVSATA------RLKTLDSYNIVDKKWFHCSTPGDSFSIRGGAGLEVVQGK  330 (470)
T ss_pred             CcCCCCCCCccceEEEEE---CCEEEEECCCCCCC------CcceEEEEECCCCEEEeCCCCCCCCCCCCCcEEEEECCc
Confidence            877   889999998877   89999999985432      3688999999999999987543 4678999999999999


Q ss_pred             EEEEcCccCCCCccccCCceEEEEcCCCceEEeccCCCCCCCCCCceEEEeCCCeEEEEcCccccccccccccceeeceE
Q psy14331        172 LVVFGGFHDNLREAKYYNDVHIFDLETYAWKKIEPLGAGPAPRSGCQMAATPDGKILISGGYSKQSVKKDVDKGIVHTDT  251 (265)
Q Consensus       172 iyv~GG~~~~~~~~~~~~~v~~y~~~~~~W~~~~~~~~~p~~~~~~~~~~~~~~~iyi~GG~~~~~~~~~~~~~~~~~~~  251 (265)
                      ||++||.++.     ..+++++||+.+++|+++.+++..|.+|..|+++++ +++|||+||................+++
T Consensus       331 iyviGG~~g~-----~~~dv~~yD~~t~~W~~~~~~g~~P~~R~~~~~~~~-~~~iyv~GG~~~~~~~~~~~~~~~~ndv  404 (470)
T PLN02193        331 VWVVYGFNGC-----EVDDVHYYDPVQDKWTQVETFGVRPSERSVFASAAV-GKHIVIFGGEIAMDPLAHVGPGQLTDGT  404 (470)
T ss_pred             EEEEECCCCC-----ccCceEEEECCCCEEEEeccCCCCCCCcceeEEEEE-CCEEEEECCccCCccccccCccceeccE
Confidence            9999997543     268999999999999999987777889999998877 8999999998653211111122456789


Q ss_pred             EEEecCcccccc
Q psy14331        252 FLLTPDSKTLRS  263 (265)
Q Consensus       252 w~~~~~~~~w~~  263 (265)
                      |.||+.+++|++
T Consensus       405 ~~~D~~t~~W~~  416 (470)
T PLN02193        405 FALDTETLQWER  416 (470)
T ss_pred             EEEEcCcCEEEE
Confidence            999999999984

>PHA02713 hypothetical protein; Provisional

Probab=100.00  E-value=1.5e-34  Score=254.09  Aligned_cols=206  Identities=16%  Similarity=0.206  Sum_probs=168.1

Q ss_pred             HHHHHHHhhcccceEEEeccCCCCCCCceeeEEecCCCEEEEECcEEeCCCceeeCCCcccCceEEEEe----eecCCCC
Q psy14331         23 IVRDIEAEEKRKNKVIEKVVPEPTRRANFSFLAHPDKDQLILFGGEFYDGQKFVFGSPKALDHLILMNL----FVSAPGA   98 (265)
Q Consensus        23 ~~~~~~~~d~~~~~w~~~~~~~p~~r~~~~~~~~~~~~~lyv~GG~~~~~~~~~~~~~~~~~~~~~yd~----w~~~~~~   98 (265)
                      ..+.++.||+.+++|.. .++||.+|..++++++  +++||++||.  ++...       ++++++||+    |...++|
T Consensus       318 ~~~~v~~Yd~~~n~W~~-~~~m~~~R~~~~~~~~--~g~IYviGG~--~~~~~-------~~sve~Ydp~~~~W~~~~~m  385 (557)
T PHA02713        318 SLNKVYKINIENKIHVE-LPPMIKNRCRFSLAVI--DDTIYAIGGQ--NGTNV-------ERTIECYTMGDDKWKMLPDM  385 (557)
T ss_pred             ccceEEEEECCCCeEee-CCCCcchhhceeEEEE--CCEEEEECCc--CCCCC-------CceEEEEECCCCeEEECCCC
Confidence            56779999999999988 8899999999999887  9999999995  33221       688999999    9999999


Q ss_pred             CCCccccceEEEecCCCEEEEEcCcccCCCc------------cccccCCceeEEEcCCCcEEEEecCCCCCCCcCceEE
Q psy14331         99 PPPRCSHQMVALSADKGQLWMFGGEFSSASE------------SQFHHYKDLWVFRMGEKKWEKIVCKDTPPSRSGHRMI  166 (265)
Q Consensus        99 p~~r~~~~~~~~~~~~~~iyv~GG~~~~~~~------------~~~~~~~~~~~yd~~~~~W~~~~~~~~p~~~~~~~~~  166 (265)
                      |.+|..++++++   +++||++||.+.....            ......+.+++|||++++|+.++++  |.+|..++++
T Consensus       386 p~~r~~~~~~~~---~g~IYviGG~~~~~~~~~~~~~~~~~~~~~~~~~~~ve~YDP~td~W~~v~~m--~~~r~~~~~~  460 (557)
T PHA02713        386 PIALSSYGMCVL---DQYIYIIGGRTEHIDYTSVHHMNSIDMEEDTHSSNKVIRYDTVNNIWETLPNF--WTGTIRPGVV  460 (557)
T ss_pred             CcccccccEEEE---CCEEEEEeCCCcccccccccccccccccccccccceEEEECCCCCeEeecCCC--CcccccCcEE
Confidence            999999999888   9999999997532100            0001257899999999999999887  4789999999


Q ss_pred             EECCEEEEEcCccCCCCccccCCceEEEEcCC-CceEEeccCCCCCCCCCCceEEEeCCCeEEEEcCccccccccccccc
Q psy14331        167 ALKKHLVVFGGFHDNLREAKYYNDVHIFDLET-YAWKKIEPLGAGPAPRSGCQMAATPDGKILISGGYSKQSVKKDVDKG  245 (265)
Q Consensus       167 ~~~~~iyv~GG~~~~~~~~~~~~~v~~y~~~~-~~W~~~~~~~~~p~~~~~~~~~~~~~~~iyi~GG~~~~~~~~~~~~~  245 (265)
                      +++++||++||.++..   ...+.+++|||.+ ++|+.++++   |.+|..++++++ +++||++||.++.   .++++|
T Consensus       461 ~~~~~IYv~GG~~~~~---~~~~~ve~Ydp~~~~~W~~~~~m---~~~r~~~~~~~~-~~~iyv~Gg~~~~---~~~e~y  530 (557)
T PHA02713        461 SHKDDIYVVCDIKDEK---NVKTCIFRYNTNTYNGWELITTT---ESRLSALHTILH-DNTIMMLHCYESY---MLQDTF  530 (557)
T ss_pred             EECCEEEEEeCCCCCC---ccceeEEEecCCCCCCeeEcccc---CcccccceeEEE-CCEEEEEeeecce---eehhhc
Confidence            9999999999986432   2235689999999 899999984   889999998887 9999999998763   356666


Q ss_pred             eeeceEEEEe
Q psy14331        246 IVHTDTFLLT  255 (265)
Q Consensus       246 ~~~~~~w~~~  255 (265)
                      ++.++.|..-
T Consensus       531 d~~~~~W~~~  540 (557)
T PHA02713        531 NVYTYEWNHI  540 (557)
T ss_pred             Ccccccccch
Confidence            6666666543

>PHA02713 hypothetical protein; Provisional

Probab=100.00  E-value=4.3e-34  Score=251.24  Aligned_cols=212  Identities=16%  Similarity=0.278  Sum_probs=170.4

Q ss_pred             HHHHHhhcccceEEEeccCCCCCCCceeeEEecCCCEEEEECcEEeCCCceeeCCCcccCceEEEEe----eecCCCCCC
Q psy14331         25 RDIEAEEKRKNKVIEKVVPEPTRRANFSFLAHPDKDQLILFGGEFYDGQKFVFGSPKALDHLILMNL----FVSAPGAPP  100 (265)
Q Consensus        25 ~~~~~~d~~~~~w~~~~~~~p~~r~~~~~~~~~~~~~lyv~GG~~~~~~~~~~~~~~~~~~~~~yd~----w~~~~~~p~  100 (265)
                      ..+++||+.+++|.. .+++|.+|..|+++++  +++||++||...+...        ++++++||+    |...++||.
T Consensus       272 ~~v~~yd~~~~~W~~-l~~mp~~r~~~~~a~l--~~~IYviGG~~~~~~~--------~~~v~~Yd~~~n~W~~~~~m~~  340 (557)
T PHA02713        272 PCILVYNINTMEYSV-ISTIPNHIINYASAIV--DNEIIIAGGYNFNNPS--------LNKVYKINIENKIHVELPPMIK  340 (557)
T ss_pred             CCEEEEeCCCCeEEE-CCCCCccccceEEEEE--CCEEEEEcCCCCCCCc--------cceEEEEECCCCeEeeCCCCcc
Confidence            357889999999998 7899999999988886  9999999995212111        689999999    999999999


Q ss_pred             CccccceEEEecCCCEEEEEcCcccCCCccccccCCceeEEEcCCCcEEEEecCCCCCCCcCceEEEECCEEEEEcCccC
Q psy14331        101 PRCSHQMVALSADKGQLWMFGGEFSSASESQFHHYKDLWVFRMGEKKWEKIVCKDTPPSRSGHRMIALKKHLVVFGGFHD  180 (265)
Q Consensus       101 ~r~~~~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~~~yd~~~~~W~~~~~~~~p~~~~~~~~~~~~~~iyv~GG~~~  180 (265)
                      +|..++++++   +++||++||.....      ..+++++||+.+++|+.++++  |.+|..+++++++++||++||.+.
T Consensus       341 ~R~~~~~~~~---~g~IYviGG~~~~~------~~~sve~Ydp~~~~W~~~~~m--p~~r~~~~~~~~~g~IYviGG~~~  409 (557)
T PHA02713        341 NRCRFSLAVI---DDTIYAIGGQNGTN------VERTIECYTMGDDKWKMLPDM--PIALSSYGMCVLDQYIYIIGGRTE  409 (557)
T ss_pred             hhhceeEEEE---CCEEEEECCcCCCC------CCceEEEEECCCCeEEECCCC--CcccccccEEEECCEEEEEeCCCc
Confidence            9999999888   99999999975332      367899999999999999877  589999999999999999999864


Q ss_pred             CCC--------------ccccCCceEEEEcCCCceEEeccCCCCCCCCCCceEEEeCCCeEEEEcCccccc-cccccccc
Q psy14331        181 NLR--------------EAKYYNDVHIFDLETYAWKKIEPLGAGPAPRSGCQMAATPDGKILISGGYSKQS-VKKDVDKG  245 (265)
Q Consensus       181 ~~~--------------~~~~~~~v~~y~~~~~~W~~~~~~~~~p~~~~~~~~~~~~~~~iyi~GG~~~~~-~~~~~~~~  245 (265)
                      ...              .....+.+++|||.+++|+.++++   +.+|..++++++ +++|||+||.+... ....+++|
T Consensus       410 ~~~~~~~~~~~~~~~~~~~~~~~~ve~YDP~td~W~~v~~m---~~~r~~~~~~~~-~~~IYv~GG~~~~~~~~~~ve~Y  485 (557)
T PHA02713        410 HIDYTSVHHMNSIDMEEDTHSSNKVIRYDTVNNIWETLPNF---WTGTIRPGVVSH-KDDIYVVCDIKDEKNVKTCIFRY  485 (557)
T ss_pred             ccccccccccccccccccccccceEEEECCCCCeEeecCCC---CcccccCcEEEE-CCEEEEEeCCCCCCccceeEEEe
Confidence            311              011257899999999999999985   788998888877 89999999986432 22345667


Q ss_pred             eeec-eEEEEecCccccc
Q psy14331        246 IVHT-DTFLLTPDSKTLR  262 (265)
Q Consensus       246 ~~~~-~~w~~~~~~~~w~  262 (265)
                      +|.. +.|...+.+..-|
T Consensus       486 dp~~~~~W~~~~~m~~~r  503 (557)
T PHA02713        486 NTNTYNGWELITTTESRL  503 (557)
T ss_pred             cCCCCCCeeEccccCccc
Confidence            7766 5676666555433

>PHA03098 kelch-like protein; Provisional

Probab=100.00  E-value=2.7e-33  Score=247.36  Aligned_cols=206  Identities=19%  Similarity=0.253  Sum_probs=170.5

Q ss_pred             HHHHHHHHhhcccceEEEeccCCCCCCCceeeEEecCCCEEEEECcEEeCCCceeeCCCcccCceEEEEe----eecCCC
Q psy14331         22 KIVRDIEAEEKRKNKVIEKVVPEPTRRANFSFLAHPDKDQLILFGGEFYDGQKFVFGSPKALDHLILMNL----FVSAPG   97 (265)
Q Consensus        22 ~~~~~~~~~d~~~~~w~~~~~~~p~~r~~~~~~~~~~~~~lyv~GG~~~~~~~~~~~~~~~~~~~~~yd~----w~~~~~   97 (265)
                      ...++++.||+.+++|.. .+++|.+|..|+++++  +++||++||..  ....       ++++++||+    |...++
T Consensus       308 ~~~~~v~~yd~~~~~W~~-~~~~~~~R~~~~~~~~--~~~lyv~GG~~--~~~~-------~~~v~~yd~~~~~W~~~~~  375 (534)
T PHA03098        308 LSVNSVVSYDTKTKSWNK-VPELIYPRKNPGVTVF--NNRIYVIGGIY--NSIS-------LNTVESWKPGESKWREEPP  375 (534)
T ss_pred             CeeccEEEEeCCCCeeeE-CCCCCcccccceEEEE--CCEEEEEeCCC--CCEe-------cceEEEEcCCCCceeeCCC
Confidence            345679999999999988 8889999999998886  99999999953  2211       689999999    999999


Q ss_pred             CCCCccccceEEEecCCCEEEEEcCcccCCCccccccCCceeEEEcCCCcEEEEecCCCCCCCcCceEEEECCEEEEEcC
Q psy14331         98 APPPRCSHQMVALSADKGQLWMFGGEFSSASESQFHHYKDLWVFRMGEKKWEKIVCKDTPPSRSGHRMIALKKHLVVFGG  177 (265)
Q Consensus        98 ~p~~r~~~~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~~~yd~~~~~W~~~~~~~~p~~~~~~~~~~~~~~iyv~GG  177 (265)
                      +|.+|..|+++.+   +++||++||......     .++++++||+.+++|+.++++  |.+|..|+++..+++||++||
T Consensus       376 lp~~r~~~~~~~~---~~~iYv~GG~~~~~~-----~~~~v~~yd~~t~~W~~~~~~--p~~r~~~~~~~~~~~iyv~GG  445 (534)
T PHA03098        376 LIFPRYNPCVVNV---NNLIYVIGGISKNDE-----LLKTVECFSLNTNKWSKGSPL--PISHYGGCAIYHDGKIYVIGG  445 (534)
T ss_pred             cCcCCccceEEEE---CCEEEEECCcCCCCc-----ccceEEEEeCCCCeeeecCCC--CccccCceEEEECCEEEEECC
Confidence            9999999999887   899999999754331     268899999999999998866  588999999999999999999


Q ss_pred             ccCCCCccccCCceEEEEcCCCceEEeccCCCCCCCCCCceEEEeCCCeEEEEcCccccccccccccceeeceEEEEecC
Q psy14331        178 FHDNLREAKYYNDVHIFDLETYAWKKIEPLGAGPAPRSGCQMAATPDGKILISGGYSKQSVKKDVDKGIVHTDTFLLTPD  257 (265)
Q Consensus       178 ~~~~~~~~~~~~~v~~y~~~~~~W~~~~~~~~~p~~~~~~~~~~~~~~~iyi~GG~~~~~~~~~~~~~~~~~~~w~~~~~  257 (265)
                      ....... ..++.+++||+.+++|+.+..+   |.+|..++++++ +++|||+||.+...         ..++++.||++
T Consensus       446 ~~~~~~~-~~~~~v~~yd~~~~~W~~~~~~---~~~r~~~~~~~~-~~~iyv~GG~~~~~---------~~~~v~~yd~~  511 (534)
T PHA03098        446 ISYIDNI-KVYNIVESYNPVTNKWTELSSL---NFPRINASLCIF-NNKIYVVGGDKYEY---------YINEIEVYDDK  511 (534)
T ss_pred             ccCCCCC-cccceEEEecCCCCceeeCCCC---CcccccceEEEE-CCEEEEEcCCcCCc---------ccceeEEEeCC
Confidence            8644221 2256799999999999999874   778888888777 89999999987543         24567888888


Q ss_pred             cccccc
Q psy14331        258 SKTLRS  263 (265)
Q Consensus       258 ~~~w~~  263 (265)
                      +++|+.
T Consensus       512 ~~~W~~  517 (534)
T PHA03098        512 TNTWTL  517 (534)
T ss_pred             CCEEEe
Confidence            888863

>PHA02790 Kelch-like protein; Provisional

Probab=100.00  E-value=4.6e-33  Score=241.42  Aligned_cols=188  Identities=16%  Similarity=0.244  Sum_probs=159.2

Q ss_pred             HHHHHHHHhhcccceEEEeccCCCCCCCceeeEEecCCCEEEEECcEEeCCCceeeCCCcccCceEEEEe----eecCCC
Q psy14331         22 KIVRDIEAEEKRKNKVIEKVVPEPTRRANFSFLAHPDKDQLILFGGEFYDGQKFVFGSPKALDHLILMNL----FVSAPG   97 (265)
Q Consensus        22 ~~~~~~~~~d~~~~~w~~~~~~~p~~r~~~~~~~~~~~~~lyv~GG~~~~~~~~~~~~~~~~~~~~~yd~----w~~~~~   97 (265)
                      ...+.++.||+.+++|.. .+++|.+|..++++++  +++||++||.  +.          .+.+++||+    |...++
T Consensus       284 ~~~~~v~~Ydp~~~~W~~-~~~m~~~r~~~~~v~~--~~~iYviGG~--~~----------~~sve~ydp~~n~W~~~~~  348 (480)
T PHA02790        284 EIHNNAIAVNYISNNWIP-IPPMNSPRLYASGVPA--NNKLYVVGGL--PN----------PTSVERWFHGDAAWVNMPS  348 (480)
T ss_pred             CcCCeEEEEECCCCEEEE-CCCCCchhhcceEEEE--CCEEEEECCc--CC----------CCceEEEECCCCeEEECCC
Confidence            455678899999999999 8899999999988886  9999999994  21          356899999    999999


Q ss_pred             CCCCccccceEEEecCCCEEEEEcCcccCCCccccccCCceeEEEcCCCcEEEEecCCCCCCCcCceEEEECCEEEEEcC
Q psy14331         98 APPPRCSHQMVALSADKGQLWMFGGEFSSASESQFHHYKDLWVFRMGEKKWEKIVCKDTPPSRSGHRMIALKKHLVVFGG  177 (265)
Q Consensus        98 ~p~~r~~~~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~~~yd~~~~~W~~~~~~~~p~~~~~~~~~~~~~~iyv~GG  177 (265)
                      ||.+|..|+++++   +++||++||....        .+.+++|||.+++|+.++++  |.+|..|++++++++||++||
T Consensus       349 l~~~r~~~~~~~~---~g~IYviGG~~~~--------~~~ve~ydp~~~~W~~~~~m--~~~r~~~~~~~~~~~IYv~GG  415 (480)
T PHA02790        349 LLKPRCNPAVASI---NNVIYVIGGHSET--------DTTTEYLLPNHDQWQFGPST--YYPHYKSCALVFGRRLFLVGR  415 (480)
T ss_pred             CCCCCcccEEEEE---CCEEEEecCcCCC--------CccEEEEeCCCCEEEeCCCC--CCccccceEEEECCEEEEECC
Confidence            9999999999888   9999999997432        35789999999999999887  488999999999999999998


Q ss_pred             ccCCCCccccCCceEEEEcCCCceEEeccCCCCCCCCCCceEEEeCCCeEEEEcCccccccccccccceeeceEEEEecC
Q psy14331        178 FHDNLREAKYYNDVHIFDLETYAWKKIEPLGAGPAPRSGCQMAATPDGKILISGGYSKQSVKKDVDKGIVHTDTFLLTPD  257 (265)
Q Consensus       178 ~~~~~~~~~~~~~v~~y~~~~~~W~~~~~~~~~p~~~~~~~~~~~~~~~iyi~GG~~~~~~~~~~~~~~~~~~~w~~~~~  257 (265)
                      .            +++||+.+++|+.++++   |.+|.+++++++ +++||++||.+....         .+.+.+||++
T Consensus       416 ~------------~e~ydp~~~~W~~~~~m---~~~r~~~~~~v~-~~~IYviGG~~~~~~---------~~~ve~Yd~~  470 (480)
T PHA02790        416 N------------AEFYCESSNTWTLIDDP---IYPRDNPELIIV-DNKLLLIGGFYRGSY---------IDTIEVYNNR  470 (480)
T ss_pred             c------------eEEecCCCCcEeEcCCC---CCCccccEEEEE-CCEEEEECCcCCCcc---------cceEEEEECC
Confidence            3            57899999999999885   788999998877 999999999864321         2446777777


Q ss_pred             ccccc
Q psy14331        258 SKTLR  262 (265)
Q Consensus       258 ~~~w~  262 (265)
                      +++|+
T Consensus       471 ~~~W~  475 (480)
T PHA02790        471 TYSWN  475 (480)
T ss_pred             CCeEE
Confidence            77775

>TIGR03548 mutarot_permut cyclically-permuted mutatrotase family protein

Probab=100.00  E-value=8.8e-33  Score=229.37  Aligned_cols=212  Identities=16%  Similarity=0.225  Sum_probs=159.4

Q ss_pred             HHHHHhh-cc-cceEEEeccCCCCCCCceeeEEecCCCEEEEECcEEeCCCceeeCCCcccCceEEEEe----e----ec
Q psy14331         25 RDIEAEE-KR-KNKVIEKVVPEPTRRANFSFLAHPDKDQLILFGGEFYDGQKFVFGSPKALDHLILMNL----F----VS   94 (265)
Q Consensus        25 ~~~~~~d-~~-~~~w~~~~~~~p~~r~~~~~~~~~~~~~lyv~GG~~~~~~~~~~~~~~~~~~~~~yd~----w----~~   94 (265)
                      ++++.++ +. +.+|.. .+++|.+|..++++++  +++||++||.  +....       ++++++||+    |    ..
T Consensus        39 ~~v~~~~~~~~~~~W~~-~~~lp~~r~~~~~~~~--~~~lyviGG~--~~~~~-------~~~v~~~d~~~~~w~~~~~~  106 (323)
T TIGR03548        39 KGIYIAKDENSNLKWVK-DGQLPYEAAYGASVSV--ENGIYYIGGS--NSSER-------FSSVYRITLDESKEELICET  106 (323)
T ss_pred             eeeEEEecCCCceeEEE-cccCCccccceEEEEE--CCEEEEEcCC--CCCCC-------ceeEEEEEEcCCceeeeeeE
Confidence            4566664 33 237988 7889999988887776  9999999995  22221       689999998    6    67


Q ss_pred             CCCCCCCccccceEEEecCCCEEEEEcCcccCCCccccccCCceeEEEcCCCcEEEEecCCCCCCCcCceEEEECCEEEE
Q psy14331         95 APGAPPPRCSHQMVALSADKGQLWMFGGEFSSASESQFHHYKDLWVFRMGEKKWEKIVCKDTPPSRSGHRMIALKKHLVV  174 (265)
Q Consensus        95 ~~~~p~~r~~~~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~~~yd~~~~~W~~~~~~~~p~~~~~~~~~~~~~~iyv  174 (265)
                      .++||.+|..|+++++   +++||++||.....      ..+++++||+.+++|+.+++++ ..+|..|++++++++|||
T Consensus       107 ~~~lp~~~~~~~~~~~---~~~iYv~GG~~~~~------~~~~v~~yd~~~~~W~~~~~~p-~~~r~~~~~~~~~~~iYv  176 (323)
T TIGR03548       107 IGNLPFTFENGSACYK---DGTLYVGGGNRNGK------PSNKSYLFNLETQEWFELPDFP-GEPRVQPVCVKLQNELYV  176 (323)
T ss_pred             cCCCCcCccCceEEEE---CCEEEEEeCcCCCc------cCceEEEEcCCCCCeeECCCCC-CCCCCcceEEEECCEEEE
Confidence            8999999999999887   89999999974322      3689999999999999998764 147888888899999999


Q ss_pred             EcCccCCCCccccCCceEEEEcCCCceEEeccCCC--CCCCCCCceEEEeCCCeEEEEcCcccccccccc----------
Q psy14331        175 FGGFHDNLREAKYYNDVHIFDLETYAWKKIEPLGA--GPAPRSGCQMAATPDGKILISGGYSKQSVKKDV----------  242 (265)
Q Consensus       175 ~GG~~~~~~~~~~~~~v~~y~~~~~~W~~~~~~~~--~p~~~~~~~~~~~~~~~iyi~GG~~~~~~~~~~----------  242 (265)
                      +||.+...     ..++++||+.+++|+.+.++..  .|..+..++.+++.+++|||+||.+.....+.+          
T Consensus       177 ~GG~~~~~-----~~~~~~yd~~~~~W~~~~~~~~~~~p~~~~~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~~~~~  251 (323)
T TIGR03548       177 FGGGSNIA-----YTDGYKYSPKKNQWQKVADPTTDSEPISLLGAASIKINESLLLCIGGFNKDVYNDAVIDLATMKDES  251 (323)
T ss_pred             EcCCCCcc-----ccceEEEecCCCeeEECCCCCCCCCceeccceeEEEECCCEEEEECCcCHHHHHHHHhhhhhccchh
Confidence            99985432     4578999999999999987632  344444555555657899999998753211111          


Q ss_pred             -------------ccceeeceEEEEecCcccccc
Q psy14331        243 -------------DKGIVHTDTFLLTPDSKTLRS  263 (265)
Q Consensus       243 -------------~~~~~~~~~w~~~~~~~~w~~  263 (265)
                                   +.+...+++++||+.+++|+.
T Consensus       252 ~~~~~~~~~~~~~~~~~~~~~v~~yd~~~~~W~~  285 (323)
T TIGR03548       252 LKGYKKEYFLKPPEWYNWNRKILIYNVRTGKWKS  285 (323)
T ss_pred             hhhhHHHHhCCCccccCcCceEEEEECCCCeeeE
Confidence                         112234678999999999874

Members of this protein family show essentially full-length homology, cyclically permuted, to YjhT from Escherichia coli. YjhT was shown to act as a mutarotase for sialic acid, and by this ability to be able to act as a virulence factor. Members of the YjhT family (TIGR03547) and this cyclically-permuted family have multiple repeats of the beta-propeller-forming Kelch repeat.

>PLN02153 epithiospecifier protein

Probab=100.00  E-value=1.7e-31  Score=223.13  Aligned_cols=212  Identities=21%  Similarity=0.381  Sum_probs=159.9

Q ss_pred             cccceEEEecc---CCCCCCCceeeEEecCCCEEEEECcEEeCCCceeeCCCcccCceEEEEe----eecCCCCC-CCcc
Q psy14331         32 KRKNKVIEKVV---PEPTRRANFSFLAHPDKDQLILFGGEFYDGQKFVFGSPKALDHLILMNL----FVSAPGAP-PPRC  103 (265)
Q Consensus        32 ~~~~~w~~~~~---~~p~~r~~~~~~~~~~~~~lyv~GG~~~~~~~~~~~~~~~~~~~~~yd~----w~~~~~~p-~~r~  103 (265)
                      +....|..+..   .+|.+|..|+++++  +++|||+||.....  ...     .+++++||+    |...++++ .||.
T Consensus         4 ~~~~~W~~~~~~~~~~P~pR~~h~~~~~--~~~iyv~GG~~~~~--~~~-----~~~~~~yd~~~~~W~~~~~~~~~p~~   74 (341)
T PLN02153          4 TLQGGWIKVEQKGGKGPGPRCSHGIAVV--GDKLYSFGGELKPN--EHI-----DKDLYVFDFNTHTWSIAPANGDVPRI   74 (341)
T ss_pred             ccCCeEEEecCCCCCCCCCCCcceEEEE--CCEEEEECCccCCC--Cce-----eCcEEEEECCCCEEEEcCccCCCCCC
Confidence            35677988544   37899999998886  89999999953221  112     589999999    99887664 3443


Q ss_pred             ---ccceEEEecCCCEEEEEcCcccCCCccccccCCceeEEEcCCCcEEEEecCC---CCCCCcCceEEEECCEEEEEcC
Q psy14331        104 ---SHQMVALSADKGQLWMFGGEFSSASESQFHHYKDLWVFRMGEKKWEKIVCKD---TPPSRSGHRMIALKKHLVVFGG  177 (265)
Q Consensus       104 ---~~~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~~~yd~~~~~W~~~~~~~---~p~~~~~~~~~~~~~~iyv~GG  177 (265)
                         .|+++++   +++||++||.....      .++++++||+.+++|+.++++.   .|.+|..|++++.+++||||||
T Consensus        75 ~~~~~~~~~~---~~~iyv~GG~~~~~------~~~~v~~yd~~t~~W~~~~~~~~~~~p~~R~~~~~~~~~~~iyv~GG  145 (341)
T PLN02153         75 SCLGVRMVAV---GTKLYIFGGRDEKR------EFSDFYSYDTVKNEWTFLTKLDEEGGPEARTFHSMASDENHVYVFGG  145 (341)
T ss_pred             ccCceEEEEE---CCEEEEECCCCCCC------ccCcEEEEECCCCEEEEeccCCCCCCCCCceeeEEEEECCEEEEECC
Confidence               5767777   89999999975432      3689999999999999987663   3789999999999999999999


Q ss_pred             ccCCCC--ccccCCceEEEEcCCCceEEeccCCCCCCCCCCceEEEeCCCeEEEEcCccccccccccccceeeceEEEEe
Q psy14331        178 FHDNLR--EAKYYNDVHIFDLETYAWKKIEPLGAGPAPRSGCQMAATPDGKILISGGYSKQSVKKDVDKGIVHTDTFLLT  255 (265)
Q Consensus       178 ~~~~~~--~~~~~~~v~~y~~~~~~W~~~~~~~~~p~~~~~~~~~~~~~~~iyi~GG~~~~~~~~~~~~~~~~~~~w~~~  255 (265)
                      ......  ....++++++||+.+++|+.++.++..|.+|.+|+++++ +++|||+||............ ...+++++||
T Consensus       146 ~~~~~~~~~~~~~~~v~~yd~~~~~W~~l~~~~~~~~~r~~~~~~~~-~~~iyv~GG~~~~~~~gG~~~-~~~~~v~~yd  223 (341)
T PLN02153        146 VSKGGLMKTPERFRTIEAYNIADGKWVQLPDPGENFEKRGGAGFAVV-QGKIWVVYGFATSILPGGKSD-YESNAVQFFD  223 (341)
T ss_pred             ccCCCccCCCcccceEEEEECCCCeEeeCCCCCCCCCCCCcceEEEE-CCeEEEEeccccccccCCccc-eecCceEEEE
Confidence            864321  112357899999999999999987656788999988777 899999999753211110011 1246789999


Q ss_pred             cCcccccc
Q psy14331        256 PDSKTLRS  263 (265)
Q Consensus       256 ~~~~~w~~  263 (265)
                      +.+++|++
T Consensus       224 ~~~~~W~~  231 (341)
T PLN02153        224 PASGKWTE  231 (341)
T ss_pred             cCCCcEEe
Confidence            99999975

>PLN02193 nitrile-specifier protein

Probab=100.00  E-value=3.4e-31  Score=229.22  Aligned_cols=217  Identities=20%  Similarity=0.334  Sum_probs=167.3

Q ss_pred             eeecccccHHHHHHHHHHhhcccceEEEeccCC---CCCCCceeeEEecCCCEEEEECcEEeCCCceeeCCCcccCceEE
Q psy14331         12 WTIMFNEDIEKIVRDIEAEEKRKNKVIEKVVPE---PTRRANFSFLAHPDKDQLILFGGEFYDGQKFVFGSPKALDHLIL   88 (265)
Q Consensus        12 ~~~~~~~~~~~~~~~~~~~d~~~~~w~~~~~~~---p~~r~~~~~~~~~~~~~lyv~GG~~~~~~~~~~~~~~~~~~~~~   88 (265)
                      +|++++.+....++++++||+.+++|.. ..++   |.+|..|+++++  +++||||||.  +....       ++++++
T Consensus       231 lYvfGG~~~~~~~ndv~~yD~~t~~W~~-l~~~~~~P~~R~~h~~~~~--~~~iYv~GG~--~~~~~-------~~~~~~  298 (470)
T PLN02193        231 LYVFGGRDASRQYNGFYSFDTTTNEWKL-LTPVEEGPTPRSFHSMAAD--EENVYVFGGV--SATAR-------LKTLDS  298 (470)
T ss_pred             EEEECCCCCCCCCccEEEEECCCCEEEE-cCcCCCCCCCccceEEEEE--CCEEEEECCC--CCCCC-------cceEEE
Confidence            4455554434456789999999999998 5544   889999998886  9999999995  32221       689999


Q ss_pred             EEe----eecCCC---CCCCccccceEEEecCCCEEEEEcCcccCCCccccccCCceeEEEcCCCcEEEEecCC-CCCCC
Q psy14331         89 MNL----FVSAPG---APPPRCSHQMVALSADKGQLWMFGGEFSSASESQFHHYKDLWVFRMGEKKWEKIVCKD-TPPSR  160 (265)
Q Consensus        89 yd~----w~~~~~---~p~~r~~~~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~~~yd~~~~~W~~~~~~~-~p~~~  160 (265)
                      ||+    |...+.   +|.+|..|+++++   +++||++||....       ..+++++||+.+++|+.++++. .|.+|
T Consensus       299 yd~~t~~W~~~~~~~~~~~~R~~~~~~~~---~gkiyviGG~~g~-------~~~dv~~yD~~t~~W~~~~~~g~~P~~R  368 (470)
T PLN02193        299 YNIVDKKWFHCSTPGDSFSIRGGAGLEVV---QGKVWVVYGFNGC-------EVDDVHYYDPVQDKWTQVETFGVRPSER  368 (470)
T ss_pred             EECCCCEEEeCCCCCCCCCCCCCcEEEEE---CCcEEEEECCCCC-------ccCceEEEECCCCEEEEeccCCCCCCCc
Confidence            999    887654   6788999988877   8999999996432       2689999999999999998763 57899


Q ss_pred             cCceEEEECCEEEEEcCccCCC-----CccccCCceEEEEcCCCceEEeccCC---CCCCCCCCceE--EEeCC-CeEEE
Q psy14331        161 SGHRMIALKKHLVVFGGFHDNL-----REAKYYNDVHIFDLETYAWKKIEPLG---AGPAPRSGCQM--AATPD-GKILI  229 (265)
Q Consensus       161 ~~~~~~~~~~~iyv~GG~~~~~-----~~~~~~~~v~~y~~~~~~W~~~~~~~---~~p~~~~~~~~--~~~~~-~~iyi  229 (265)
                      ..|+++.++++||||||.....     ....+.+++++||+.+++|+.+..++   ..|.+|..+++  +.+.+ +.|++
T Consensus       369 ~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~ndv~~~D~~t~~W~~~~~~~~~~~~P~~R~~~~~~~~~~~~~~~~~~  448 (470)
T PLN02193        369 SVFASAAVGKHIVIFGGEIAMDPLAHVGPGQLTDGTFALDTETLQWERLDKFGEEEETPSSRGWTASTTGTIDGKKGLVM  448 (470)
T ss_pred             ceeEEEEECCEEEEECCccCCccccccCccceeccEEEEEcCcCEEEEcccCCCCCCCCCCCccccceeeEEcCCceEEE
Confidence            9999999999999999985321     01235679999999999999998654   25777866643  22323 45999


Q ss_pred             EcCccccccccccccceeeceEEEEecCc
Q psy14331        230 SGGYSKQSVKKDVDKGIVHTDTFLLTPDS  258 (265)
Q Consensus       230 ~GG~~~~~~~~~~~~~~~~~~~w~~~~~~  258 (265)
                      +||.....        ...+|+|.+++++
T Consensus       449 fGG~~~~~--------~~~~D~~~~~~~~  469 (470)
T PLN02193        449 HGGKAPTN--------DRFDDLFFYGIDS  469 (470)
T ss_pred             EcCCCCcc--------ccccceEEEecCC
Confidence            99997543        3678999998875

>TIGR03548 mutarot_permut cyclically-permuted mutatrotase family protein

Probab=99.97  E-value=2.2e-30  Score=214.96  Aligned_cols=193  Identities=24%  Similarity=0.354  Sum_probs=148.7

Q ss_pred             HHHHHHHHHhhcccceEE---EeccCCCCCCCceeeEEecCCCEEEEECcEEeCCCceeeCCCcccCceEEEEe----ee
Q psy14331         21 EKIVRDIEAEEKRKNKVI---EKVVPEPTRRANFSFLAHPDKDQLILFGGEFYDGQKFVFGSPKALDHLILMNL----FV   93 (265)
Q Consensus        21 ~~~~~~~~~~d~~~~~w~---~~~~~~p~~r~~~~~~~~~~~~~lyv~GG~~~~~~~~~~~~~~~~~~~~~yd~----w~   93 (265)
                      ...++++++||+.+++|.   ...+++|.+|..|+++++  +++||++||.. ++..        ++++++||+    |.
T Consensus        84 ~~~~~~v~~~d~~~~~w~~~~~~~~~lp~~~~~~~~~~~--~~~iYv~GG~~-~~~~--------~~~v~~yd~~~~~W~  152 (323)
T TIGR03548        84 SERFSSVYRITLDESKEELICETIGNLPFTFENGSACYK--DGTLYVGGGNR-NGKP--------SNKSYLFNLETQEWF  152 (323)
T ss_pred             CCCceeEEEEEEcCCceeeeeeEcCCCCcCccCceEEEE--CCEEEEEeCcC-CCcc--------CceEEEEcCCCCCee
Confidence            345678999999999982   337789999999998886  99999999952 2221        689999999    99


Q ss_pred             cCCCCCC-CccccceEEEecCCCEEEEEcCcccCCCccccccCCceeEEEcCCCcEEEEecCC---CCCCCcCceEEE-E
Q psy14331         94 SAPGAPP-PRCSHQMVALSADKGQLWMFGGEFSSASESQFHHYKDLWVFRMGEKKWEKIVCKD---TPPSRSGHRMIA-L  168 (265)
Q Consensus        94 ~~~~~p~-~r~~~~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~~~yd~~~~~W~~~~~~~---~p~~~~~~~~~~-~  168 (265)
                      ..+++|. +|..|+++.+   +++|||+||.....       ..++++||+++++|+.++++.   .|.++..+++++ .
T Consensus       153 ~~~~~p~~~r~~~~~~~~---~~~iYv~GG~~~~~-------~~~~~~yd~~~~~W~~~~~~~~~~~p~~~~~~~~~~~~  222 (323)
T TIGR03548       153 ELPDFPGEPRVQPVCVKL---QNELYVFGGGSNIA-------YTDGYKYSPKKNQWQKVADPTTDSEPISLLGAASIKIN  222 (323)
T ss_pred             ECCCCCCCCCCcceEEEE---CCEEEEEcCCCCcc-------ccceEEEecCCCeeEECCCCCCCCCceeccceeEEEEC
Confidence            9999884 7888877777   89999999975321       457899999999999998763   244444444444 4


Q ss_pred             CCEEEEEcCccCCC----------------------------CccccCCceEEEEcCCCceEEeccCCCCCCCCCCceEE
Q psy14331        169 KKHLVVFGGFHDNL----------------------------REAKYYNDVHIFDLETYAWKKIEPLGAGPAPRSGCQMA  220 (265)
Q Consensus       169 ~~~iyv~GG~~~~~----------------------------~~~~~~~~v~~y~~~~~~W~~~~~~~~~p~~~~~~~~~  220 (265)
                      +++||++||.+...                            ....+.+++++||+.+++|+.+..+  +..+|.+++++
T Consensus       223 ~~~iyv~GG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~yd~~~~~W~~~~~~--p~~~r~~~~~~  300 (323)
T TIGR03548       223 ESLLLCIGGFNKDVYNDAVIDLATMKDESLKGYKKEYFLKPPEWYNWNRKILIYNVRTGKWKSIGNS--PFFARCGAALL  300 (323)
T ss_pred             CCEEEEECCcCHHHHHHHHhhhhhccchhhhhhHHHHhCCCccccCcCceEEEEECCCCeeeEcccc--cccccCchheE
Confidence            78999999986421                            0112347899999999999999874  23578889888


Q ss_pred             EeCCCeEEEEcCccccc
Q psy14331        221 ATPDGKILISGGYSKQS  237 (265)
Q Consensus       221 ~~~~~~iyi~GG~~~~~  237 (265)
                      ++ +++||++||.....
T Consensus       301 ~~-~~~iyv~GG~~~pg  316 (323)
T TIGR03548       301 LT-GNNIFSINGELKPG  316 (323)
T ss_pred             EE-CCEEEEEeccccCC
Confidence            77 89999999986554

Members of this protein family show essentially full-length homology, cyclically permuted, to YjhT from Escherichia coli. YjhT was shown to act as a mutarotase for sialic acid, and by this ability to be able to act as a virulence factor. Members of the YjhT family (TIGR03547) and this cyclically-permuted family have multiple repeats of the beta-propeller-forming Kelch repeat.

>KOG1230|consensus

Probab=99.97  E-value=2.4e-30  Score=207.54  Aligned_cols=233  Identities=28%  Similarity=0.524  Sum_probs=189.3

Q ss_pred             HHHHHHHhhcccceEEEecc-CCCCCCCceeeEEecCCCEEEEECcEEeCCCceeeCCCcccCceEEEEe----eecC--
Q psy14331         23 IVRDIEAEEKRKNKVIEKVV-PEPTRRANFSFLAHPDKDQLILFGGEFYDGQKFVFGSPKALDHLILMNL----FVSA--   95 (265)
Q Consensus        23 ~~~~~~~~d~~~~~w~~~~~-~~p~~r~~~~~~~~~~~~~lyv~GG~~~~~~~~~~~~~~~~~~~~~yd~----w~~~--   95 (265)
                      ..++++.||..+++|..+.. +.|.||.+|++++++ .+.+|+|||.....++..+   -..+++|.||+    |+.+  
T Consensus        96 vYndLy~Yn~k~~eWkk~~spn~P~pRsshq~va~~-s~~l~~fGGEfaSPnq~qF---~HYkD~W~fd~~trkweql~~  171 (521)
T KOG1230|consen   96 VYNDLYSYNTKKNEWKKVVSPNAPPPRSSHQAVAVP-SNILWLFGGEFASPNQEQF---HHYKDLWLFDLKTRKWEQLEF  171 (521)
T ss_pred             EeeeeeEEeccccceeEeccCCCcCCCccceeEEec-cCeEEEeccccCCcchhhh---hhhhheeeeeeccchheeecc
Confidence            34689999999999988654 679999999999984 4699999997544333221   12789999999    7654  


Q ss_pred             CCCCCCccccceEEEecCCCEEEEEcCcccCCCccccccCCceeEEEcCCCcEEEEecCC-CCCCCcCceEEEE-CCEEE
Q psy14331         96 PGAPPPRCSHQMVALSADKGQLWMFGGEFSSASESQFHHYKDLWVFRMGEKKWEKIVCKD-TPPSRSGHRMIAL-KKHLV  173 (265)
Q Consensus        96 ~~~p~~r~~~~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~~~yd~~~~~W~~~~~~~-~p~~~~~~~~~~~-~~~iy  173 (265)
                      +..|.||++|.+++.   .++|++|||..+....  ..+++++++||+.+-+|+++.+.. .|.||.++++.+. .+.||
T Consensus       172 ~g~PS~RSGHRMvaw---K~~lilFGGFhd~nr~--y~YyNDvy~FdLdtykW~Klepsga~PtpRSGcq~~vtpqg~i~  246 (521)
T KOG1230|consen  172 GGGPSPRSGHRMVAW---KRQLILFGGFHDSNRD--YIYYNDVYAFDLDTYKWSKLEPSGAGPTPRSGCQFSVTPQGGIV  246 (521)
T ss_pred             CCCCCCCccceeEEe---eeeEEEEcceecCCCc--eEEeeeeEEEeccceeeeeccCCCCCCCCCCcceEEecCCCcEE
Confidence            567999999999998   9999999998766433  357999999999999999998854 5999999999888 99999


Q ss_pred             EEcCccCCCC-----ccccCCceEEEEcCC-----CceEEeccCCCCCCCCCCceEEEeCCCeEEEEcCccccccccccc
Q psy14331        174 VFGGFHDNLR-----EAKYYNDVHIFDLET-----YAWKKIEPLGAGPAPRSGCQMAATPDGKILISGGYSKQSVKKDVD  243 (265)
Q Consensus       174 v~GG~~~~~~-----~~~~~~~v~~y~~~~-----~~W~~~~~~~~~p~~~~~~~~~~~~~~~iyi~GG~~~~~~~~~~~  243 (265)
                      |.||++....     .-..+++++.+++..     =.|+++.+.+..|.+|+++++++..+++-+.|||..+..-..+..
T Consensus       247 vyGGYsK~~~kK~~dKG~~hsDmf~L~p~~~~~dKw~W~kvkp~g~kPspRsgfsv~va~n~kal~FGGV~D~eeeeEsl  326 (521)
T KOG1230|consen  247 VYGGYSKQRVKKDVDKGTRHSDMFLLKPEDGREDKWVWTKVKPSGVKPSPRSGFSVAVAKNHKALFFGGVCDLEEEEESL  326 (521)
T ss_pred             EEcchhHhhhhhhhhcCceeeeeeeecCCcCCCcceeEeeccCCCCCCCCCCceeEEEecCCceEEecceecccccchhh
Confidence            9999854321     124578999999998     469999999999999999999999888999999987643333344


Q ss_pred             cceeeceEEEEecCccccccc
Q psy14331        244 KGIVHTDTFLLTPDSKTLRSC  264 (265)
Q Consensus       244 ~~~~~~~~w~~~~~~~~w~~~  264 (265)
                      .....+|+|.||...++|+.+
T Consensus       327 ~g~F~NDLy~fdlt~nrW~~~  347 (521)
T KOG1230|consen  327 SGEFFNDLYFFDLTRNRWSEG  347 (521)
T ss_pred             hhhhhhhhhheecccchhhHh
Confidence            456788999999999999863

>KOG4693|consensus

Probab=99.97  E-value=2.5e-30  Score=197.02  Aligned_cols=213  Identities=20%  Similarity=0.345  Sum_probs=174.3

Q ss_pred             HHHHhhcccceEEEecc------------CCCCCCCceeeEEecCCCEEEEECcEEeCCCceeeCCCcccCceEEEEe--
Q psy14331         26 DIEAEEKRKNKVIEKVV------------PEPTRRANFSFLAHPDKDQLILFGGEFYDGQKFVFGSPKALDHLILMNL--   91 (265)
Q Consensus        26 ~~~~~d~~~~~w~~~~~------------~~p~~r~~~~~~~~~~~~~lyv~GG~~~~~~~~~~~~~~~~~~~~~yd~--   91 (265)
                      ++..+|..+-+|..+.+            ..|..|++|+.+..  .+++|+.||.+.+...        .|-+++||+  
T Consensus        45 DVH~lNa~~~RWtk~pp~~~ka~i~~~yp~VPyqRYGHtvV~y--~d~~yvWGGRND~ega--------CN~Ly~fDp~t  114 (392)
T KOG4693|consen   45 DVHVLNAENYRWTKMPPGITKATIESPYPAVPYQRYGHTVVEY--QDKAYVWGGRNDDEGA--------CNLLYEFDPET  114 (392)
T ss_pred             eeEEeeccceeEEecCcccccccccCCCCccchhhcCceEEEE--cceEEEEcCccCcccc--------cceeeeecccc
Confidence            46688999999987433            24678999998886  9999999996443333        689999999  


Q ss_pred             --eecC---CCCCCCccccceEEEecCCCEEEEEcCcccCCCccccccCCceeEEEcCCCcEEEEecCCC-CCCCcCceE
Q psy14331         92 --FVSA---PGAPPPRCSHQMVALSADKGQLWMFGGEFSSASESQFHHYKDLWVFRMGEKKWEKIVCKDT-PPSRSGHRM  165 (265)
Q Consensus        92 --w~~~---~~~p~~r~~~~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~~~yd~~~~~W~~~~~~~~-p~~~~~~~~  165 (265)
                        |.+.   .-.|..|.+|++|++   ++.+|+|||..+...    +.++++.++|..|.+|+.+...+. |.=|..|++
T Consensus       115 ~~W~~p~v~G~vPgaRDGHsAcV~---gn~MyiFGGye~~a~----~FS~d~h~ld~~TmtWr~~~Tkg~PprwRDFH~a  187 (392)
T KOG4693|consen  115 NVWKKPEVEGFVPGARDGHSACVW---GNQMYIFGGYEEDAQ----RFSQDTHVLDFATMTWREMHTKGDPPRWRDFHTA  187 (392)
T ss_pred             ccccccceeeecCCccCCceeeEE---CcEEEEecChHHHHH----hhhccceeEeccceeeeehhccCCCchhhhhhhh
Confidence              6543   447889999999999   999999999855433    458999999999999999987774 445678999


Q ss_pred             EEECCEEEEEcCccCCCC-----ccccCCceEEEEcCCCceEEeccCCCCCCCCCCceEEEeCCCeEEEEcCcccccccc
Q psy14331        166 IALKKHLVVFGGFHDNLR-----EAKYYNDVHIFDLETYAWKKIEPLGAGPAPRSGCQMAATPDGKILISGGYSKQSVKK  240 (265)
Q Consensus       166 ~~~~~~iyv~GG~~~~~~-----~~~~~~~v~~y~~~~~~W~~~~~~~~~p~~~~~~~~~~~~~~~iyi~GG~~~~~~~~  240 (265)
                      +++++.+|||||......     ..++.+.|..+|..+..|.+....+..|.+|.+|++.+. +++||+|||++...   
T Consensus       188 ~~~~~~MYiFGGR~D~~gpfHs~~e~Yc~~i~~ld~~T~aW~r~p~~~~~P~GRRSHS~fvY-ng~~Y~FGGYng~l---  263 (392)
T KOG4693|consen  188 SVIDGMMYIFGGRSDESGPFHSIHEQYCDTIMALDLATGAWTRTPENTMKPGGRRSHSTFVY-NGKMYMFGGYNGTL---  263 (392)
T ss_pred             hhccceEEEeccccccCCCccchhhhhcceeEEEeccccccccCCCCCcCCCcccccceEEE-cceEEEecccchhh---
Confidence            999999999999865422     246778899999999999999888888999999998877 99999999998653   


Q ss_pred             ccccceeeceEEEEecCcccccc
Q psy14331        241 DVDKGIVHTDTFLLTPDSKTLRS  263 (265)
Q Consensus       241 ~~~~~~~~~~~w~~~~~~~~w~~  263 (265)
                          -.-.+|+|+|||.+..|..
T Consensus       264 ----n~HfndLy~FdP~t~~W~~  282 (392)
T KOG4693|consen  264 ----NVHFNDLYCFDPKTSMWSV  282 (392)
T ss_pred             ----hhhhcceeecccccchhee
Confidence                1246789999999999974

>PHA03098 kelch-like protein; Provisional

Probab=99.97  E-value=3.9e-29  Score=220.93  Aligned_cols=202  Identities=18%  Similarity=0.264  Sum_probs=159.5

Q ss_pred             HHHHhhcccceEEEeccCCCCCCCceeeEEecCCCEEEEECcEEeCCCceeeCCCcccCceEEEEe----eecCCCCCCC
Q psy14331         26 DIEAEEKRKNKVIEKVVPEPTRRANFSFLAHPDKDQLILFGGEFYDGQKFVFGSPKALDHLILMNL----FVSAPGAPPP  101 (265)
Q Consensus        26 ~~~~~d~~~~~w~~~~~~~p~~r~~~~~~~~~~~~~lyv~GG~~~~~~~~~~~~~~~~~~~~~yd~----w~~~~~~p~~  101 (265)
                      .+..|++..++|.. ..+.|. +..|+++++  ++.||++||.......        .+++++||+    |...++||.+
T Consensus       265 ~~~~~~~~~~~~~~-~~~~~~-~~~~~~~~~--~~~lyv~GG~~~~~~~--------~~~v~~yd~~~~~W~~~~~~~~~  332 (534)
T PHA03098        265 NYITNYSPLSEINT-IIDIHY-VYCFGSVVL--NNVIYFIGGMNKNNLS--------VNSVVSYDTKTKSWNKVPELIYP  332 (534)
T ss_pred             eeeecchhhhhccc-ccCccc-cccceEEEE--CCEEEEECCCcCCCCe--------eccEEEEeCCCCeeeECCCCCcc
Confidence            34567888888877 444442 344566665  9999999995322211        679999999    9999999999


Q ss_pred             ccccceEEEecCCCEEEEEcCcccCCCccccccCCceeEEEcCCCcEEEEecCCCCCCCcCceEEEECCEEEEEcCccCC
Q psy14331        102 RCSHQMVALSADKGQLWMFGGEFSSASESQFHHYKDLWVFRMGEKKWEKIVCKDTPPSRSGHRMIALKKHLVVFGGFHDN  181 (265)
Q Consensus       102 r~~~~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~~~yd~~~~~W~~~~~~~~p~~~~~~~~~~~~~~iyv~GG~~~~  181 (265)
                      |..|+++.+   +++||++||....      ...+++++||+.+++|+.++++  |.+|..|+++.++++||++||....
T Consensus       333 R~~~~~~~~---~~~lyv~GG~~~~------~~~~~v~~yd~~~~~W~~~~~l--p~~r~~~~~~~~~~~iYv~GG~~~~  401 (534)
T PHA03098        333 RKNPGVTVF---NNRIYVIGGIYNS------ISLNTVESWKPGESKWREEPPL--IFPRYNPCVVNVNNLIYVIGGISKN  401 (534)
T ss_pred             cccceEEEE---CCEEEEEeCCCCC------EecceEEEEcCCCCceeeCCCc--CcCCccceEEEECCEEEEECCcCCC
Confidence            999999888   8999999997632      2378899999999999998876  5899999999999999999997543


Q ss_pred             CCccccCCceEEEEcCCCceEEeccCCCCCCCCCCceEEEeCCCeEEEEcCccccccccccccceeeceEEEEecCcccc
Q psy14331        182 LREAKYYNDVHIFDLETYAWKKIEPLGAGPAPRSGCQMAATPDGKILISGGYSKQSVKKDVDKGIVHTDTFLLTPDSKTL  261 (265)
Q Consensus       182 ~~~~~~~~~v~~y~~~~~~W~~~~~~~~~p~~~~~~~~~~~~~~~iyi~GG~~~~~~~~~~~~~~~~~~~w~~~~~~~~w  261 (265)
                      .   ..++++++||+.+++|+.+.+   .|.+|.+++++.. +++|||+||.+....      ....+.+++||+.+++|
T Consensus       402 ~---~~~~~v~~yd~~t~~W~~~~~---~p~~r~~~~~~~~-~~~iyv~GG~~~~~~------~~~~~~v~~yd~~~~~W  468 (534)
T PHA03098        402 D---ELLKTVECFSLNTNKWSKGSP---LPISHYGGCAIYH-DGKIYVIGGISYIDN------IKVYNIVESYNPVTNKW  468 (534)
T ss_pred             C---cccceEEEEeCCCCeeeecCC---CCccccCceEEEE-CCEEEEECCccCCCC------CcccceEEEecCCCCce
Confidence            3   236889999999999999987   4788988988776 899999999864321      11234588888888888


Q ss_pred             cc
Q psy14331        262 RS  263 (265)
Q Consensus       262 ~~  263 (265)
                      +.
T Consensus       469 ~~  470 (534)
T PHA03098        469 TE  470 (534)
T ss_pred             ee
Confidence            74

>KOG4693|consensus

Probab=99.97  E-value=5.7e-30  Score=195.03  Aligned_cols=206  Identities=20%  Similarity=0.309  Sum_probs=166.7

Q ss_pred             cccccHHHHHHHHHHhhcccceEEEe--ccCCCCCCCceeeEEecCCCEEEEECcEEeCCCceeeCCCcccCceEEEEe-
Q psy14331         15 MFNEDIEKIVRDIEAEEKRKNKVIEK--VVPEPTRRANFSFLAHPDKDQLILFGGEFYDGQKFVFGSPKALDHLILMNL-   91 (265)
Q Consensus        15 ~~~~~~~~~~~~~~~~d~~~~~w~~~--~~~~p~~r~~~~~~~~~~~~~lyv~GG~~~~~~~~~~~~~~~~~~~~~yd~-   91 (265)
                      ++-.+-+.+-+.+++||++++.|+..  ....|..|-+|++|+.  ++.+|+|||+..+  ...+     ++++.++|. 
T Consensus        95 GGRND~egaCN~Ly~fDp~t~~W~~p~v~G~vPgaRDGHsAcV~--gn~MyiFGGye~~--a~~F-----S~d~h~ld~~  165 (392)
T KOG4693|consen   95 GGRNDDEGACNLLYEFDPETNVWKKPEVEGFVPGARDGHSACVW--GNQMYIFGGYEED--AQRF-----SQDTHVLDFA  165 (392)
T ss_pred             cCccCcccccceeeeeccccccccccceeeecCCccCCceeeEE--CcEEEEecChHHH--HHhh-----hccceeEecc
Confidence            34344445778899999999999753  3478999999999997  9999999996333  3333     789999999 


Q ss_pred             ---eecC---CCCCCCccccceEEEecCCCEEEEEcCcccCCCcc---ccccCCceeEEEcCCCcEEEEecCC-CCCCCc
Q psy14331         92 ---FVSA---PGAPPPRCSHQMVALSADKGQLWMFGGEFSSASES---QFHHYKDLWVFRMGEKKWEKIVCKD-TPPSRS  161 (265)
Q Consensus        92 ---w~~~---~~~p~~r~~~~~~~~~~~~~~iyv~GG~~~~~~~~---~~~~~~~~~~yd~~~~~W~~~~~~~-~p~~~~  161 (265)
                         |...   ...|.=|..|+++++   ++.+|+|||+.+.....   ...+.+.+..+|+.|+.|...+... .|..|.
T Consensus       166 TmtWr~~~Tkg~PprwRDFH~a~~~---~~~MYiFGGR~D~~gpfHs~~e~Yc~~i~~ld~~T~aW~r~p~~~~~P~GRR  242 (392)
T KOG4693|consen  166 TMTWREMHTKGDPPRWRDFHTASVI---DGMMYIFGGRSDESGPFHSIHEQYCDTIMALDLATGAWTRTPENTMKPGGRR  242 (392)
T ss_pred             ceeeeehhccCCCchhhhhhhhhhc---cceEEEeccccccCCCccchhhhhcceeEEEeccccccccCCCCCcCCCccc
Confidence               7654   445666899999988   89999999985432211   1135678889999999999986665 689999


Q ss_pred             CceEEEECCEEEEEcCccCCCCccccCCceEEEEcCCCceEEeccCCCCCCCCCCceEEEeCCCeEEEEcCccc
Q psy14331        162 GHRMIALKKHLVVFGGFHDNLREAKYYNDVHIFDLETYAWKKIEPLGAGPAPRSGCQMAATPDGKILISGGYSK  235 (265)
Q Consensus       162 ~~~~~~~~~~iyv~GG~~~~~~~~~~~~~v~~y~~~~~~W~~~~~~~~~p~~~~~~~~~~~~~~~iyi~GG~~~  235 (265)
                      .|++.+.++++|+|||.++...  ..++++|+|||.+..|..+...+..|.+|..+.+++. ++++|+|||...
T Consensus       243 SHS~fvYng~~Y~FGGYng~ln--~HfndLy~FdP~t~~W~~I~~~Gk~P~aRRRqC~~v~-g~kv~LFGGTsP  313 (392)
T KOG4693|consen  243 SHSTFVYNGKMYMFGGYNGTLN--VHFNDLYCFDPKTSMWSVISVRGKYPSARRRQCSVVS-GGKVYLFGGTSP  313 (392)
T ss_pred             ccceEEEcceEEEecccchhhh--hhhcceeecccccchheeeeccCCCCCcccceeEEEE-CCEEEEecCCCC
Confidence            9999999999999999987643  5589999999999999999999999999988777666 999999999764

>KOG4152|consensus

Probab=99.96  E-value=1.4e-28  Score=202.33  Aligned_cols=240  Identities=22%  Similarity=0.333  Sum_probs=189.7

Q ss_pred             cceeeeecccccHHHHHHHHHHhhcccceEEEecc------CCCCCCCceeeEEecCCCEEEEECcEEeCCCceeeCCCc
Q psy14331          8 HAMSWTIMFNEDIEKIVRDIEAEEKRKNKVIEKVV------PEPTRRANFSFLAHPDKDQLILFGGEFYDGQKFVFGSPK   81 (265)
Q Consensus         8 ~~~~~~~~~~~~~~~~~~~~~~~d~~~~~w~~~~~------~~p~~r~~~~~~~~~~~~~lyv~GG~~~~~~~~~~~~~~   81 (265)
                      +.-.|..++..+..+..++++++..+.-.|..+-+      ++|+||.+|+...+  +++.|+|||...+.+......+.
T Consensus        91 GtrilvFGGMvEYGkYsNdLYELQasRWeWkrlkp~~p~nG~pPCPRlGHSFsl~--gnKcYlFGGLaNdseDpknNvPr  168 (830)
T KOG4152|consen   91 GTRILVFGGMVEYGKYSNDLYELQASRWEWKRLKPKTPKNGPPPCPRLGHSFSLV--GNKCYLFGGLANDSEDPKNNVPR  168 (830)
T ss_pred             CceEEEEccEeeeccccchHHHhhhhhhhHhhcCCCCCCCCCCCCCccCceeEEe--ccEeEEeccccccccCcccccch
Confidence            33445556777888899999999988888877543      68999999999986  99999999974444443344677


Q ss_pred             ccCceEEEEe--------ee---cCCCCCCCccccceEEEecCCC---EEEEEcCcccCCCccccccCCceeEEEcCCCc
Q psy14331         82 ALDHLILMNL--------FV---SAPGAPPPRCSHQMVALSADKG---QLWMFGGEFSSASESQFHHYKDLWVFRMGEKK  147 (265)
Q Consensus        82 ~~~~~~~yd~--------w~---~~~~~p~~r~~~~~~~~~~~~~---~iyv~GG~~~~~~~~~~~~~~~~~~yd~~~~~  147 (265)
                      +++++|.+++        |.   ....+|.+|.+|+++++...++   ++||+||....       .+.|+|.+|+++-.
T Consensus       169 YLnDlY~leL~~Gsgvv~W~ip~t~Gv~P~pRESHTAViY~eKDs~~skmvvyGGM~G~-------RLgDLW~Ldl~Tl~  241 (830)
T KOG4152|consen  169 YLNDLYILELRPGSGVVAWDIPITYGVLPPPRESHTAVIYTEKDSKKSKMVVYGGMSGC-------RLGDLWTLDLDTLT  241 (830)
T ss_pred             hhcceEEEEeccCCceEEEecccccCCCCCCcccceeEEEEeccCCcceEEEEcccccc-------cccceeEEecceee
Confidence            8999999998        65   3466899999999999965544   79999998654       38999999999999


Q ss_pred             EEEEecCC-CCCCCcCceEEEECCEEEEEcCccCC----------CCccccCCceEEEEcCCCceEEeccC----CCCCC
Q psy14331        148 WEKIVCKD-TPPSRSGHRMIALKKHLVVFGGFHDN----------LREAKYYNDVHIFDLETYAWKKIEPL----GAGPA  212 (265)
Q Consensus       148 W~~~~~~~-~p~~~~~~~~~~~~~~iyv~GG~~~~----------~~~~~~~~~v~~y~~~~~~W~~~~~~----~~~p~  212 (265)
                      |.+....+ .|.||.-|+++.+++++|||||+-..          .......+.+-++|+.+..|+.+-..    ...|.
T Consensus       242 W~kp~~~G~~PlPRSLHsa~~IGnKMyvfGGWVPl~~~~~~~~~hekEWkCTssl~clNldt~~W~tl~~d~~ed~tiPR  321 (830)
T KOG4152|consen  242 WNKPSLSGVAPLPRSLHSATTIGNKMYVFGGWVPLVMDDVKVATHEKEWKCTSSLACLNLDTMAWETLLMDTLEDNTIPR  321 (830)
T ss_pred             cccccccCCCCCCcccccceeecceeEEecceeeeeccccccccccceeeeccceeeeeecchheeeeeecccccccccc
Confidence            99987655 68999999999999999999998321          11124457788999999999977432    22789


Q ss_pred             CCCCceEEEeCCCeEEEEcCccccccccccccceeeceEEEEecCcc
Q psy14331        213 PRSGCQMAATPDGKILISGGYSKQSVKKDVDKGIVHTDTFLLTPDSK  259 (265)
Q Consensus       213 ~~~~~~~~~~~~~~iyi~GG~~~~~~~~~~~~~~~~~~~w~~~~~~~  259 (265)
                      +|.+|.++++ +.++||..|++...  +......+-.|+|-+|+...
T Consensus       322 ~RAGHCAvAi-gtRlYiWSGRDGYr--KAwnnQVCCkDlWyLdTekP  365 (830)
T KOG4152|consen  322 ARAGHCAVAI-GTRLYIWSGRDGYR--KAWNNQVCCKDLWYLDTEKP  365 (830)
T ss_pred             ccccceeEEe-ccEEEEEeccchhh--HhhccccchhhhhhhcccCC
Confidence            9999998888 89999999987543  55555677889999988653

>KOG0379|consensus

Probab=99.96  E-value=1.7e-28  Score=211.98  Aligned_cols=209  Identities=29%  Similarity=0.498  Sum_probs=175.4

Q ss_pred             HHHHhhcccceEEEecc--CCCCCCCceeeEEecCCCEEEEECcEEeCCCceeeCCCcccCceEEEEe----eecC---C
Q psy14331         26 DIEAEEKRKNKVIEKVV--PEPTRRANFSFLAHPDKDQLILFGGEFYDGQKFVFGSPKALDHLILMNL----FVSA---P   96 (265)
Q Consensus        26 ~~~~~d~~~~~w~~~~~--~~p~~r~~~~~~~~~~~~~lyv~GG~~~~~~~~~~~~~~~~~~~~~yd~----w~~~---~   96 (265)
                      +++.+|..+..|....+  ..|.+|.+|.++++  +++||+|||...  ....      ++++++||+    |...   .
T Consensus        89 dl~~~d~~~~~w~~~~~~g~~p~~r~g~~~~~~--~~~l~lfGG~~~--~~~~------~~~l~~~d~~t~~W~~l~~~~  158 (482)
T KOG0379|consen   89 DLYVLDLESQLWTKPAATGDEPSPRYGHSLSAV--GDKLYLFGGTDK--KYRN------LNELHSLDLSTRTWSLLSPTG  158 (482)
T ss_pred             eeEEeecCCcccccccccCCCCCcccceeEEEE--CCeEEEEccccC--CCCC------hhheEeccCCCCcEEEecCcC
Confidence            49999999999977444  67899999999997  899999999632  1211      689999999    6543   4


Q ss_pred             CCCCCccccceEEEecCCCEEEEEcCcccCCCccccccCCceeEEEcCCCcEEEEecCC-CCCCCcCceEEEECCEEEEE
Q psy14331         97 GAPPPRCSHQMVALSADKGQLWMFGGEFSSASESQFHHYKDLWVFRMGEKKWEKIVCKD-TPPSRSGHRMIALKKHLVVF  175 (265)
Q Consensus        97 ~~p~~r~~~~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~~~yd~~~~~W~~~~~~~-~p~~~~~~~~~~~~~~iyv~  175 (265)
                      ..|.+|.+|++++.   +++|||+||......     ..+++++||+++.+|.++...+ .|.||.+|+++++++++++|
T Consensus       159 ~~P~~r~~Hs~~~~---g~~l~vfGG~~~~~~-----~~ndl~i~d~~~~~W~~~~~~g~~P~pR~gH~~~~~~~~~~v~  230 (482)
T KOG0379|consen  159 DPPPPRAGHSATVV---GTKLVVFGGIGGTGD-----SLNDLHIYDLETSTWSELDTQGEAPSPRYGHAMVVVGNKLLVF  230 (482)
T ss_pred             CCCCCcccceEEEE---CCEEEEECCccCccc-----ceeeeeeeccccccceecccCCCCCCCCCCceEEEECCeEEEE
Confidence            46899999999988   899999999876542     4899999999999999997766 68899999999999999999


Q ss_pred             cCccCCCCccccCCceEEEEcCCCceEEeccCCCCCCCCCCceEEEeCCCeEEEEcCccccccccccccceeeceEEEEe
Q psy14331        176 GGFHDNLREAKYYNDVHIFDLETYAWKKIEPLGAGPAPRSGCQMAATPDGKILISGGYSKQSVKKDVDKGIVHTDTFLLT  255 (265)
Q Consensus       176 GG~~~~~~~~~~~~~v~~y~~~~~~W~~~~~~~~~p~~~~~~~~~~~~~~~iyi~GG~~~~~~~~~~~~~~~~~~~w~~~  255 (265)
                      ||.+..   ..+++++|.+|+.+..|..+...+..|.+|+.|.++.. +++++|+||.....       -.+..+.|.|+
T Consensus       231 gG~~~~---~~~l~D~~~ldl~~~~W~~~~~~g~~p~~R~~h~~~~~-~~~~~l~gG~~~~~-------~~~l~~~~~l~  299 (482)
T KOG0379|consen  231 GGGDDG---DVYLNDVHILDLSTWEWKLLPTGGDLPSPRSGHSLTVS-GDHLLLFGGGTDPK-------QEPLGDLYGLD  299 (482)
T ss_pred             eccccC---CceecceEeeecccceeeeccccCCCCCCcceeeeEEE-CCEEEEEcCCcccc-------ccccccccccc
Confidence            998732   26799999999999999999999999999999999854 89999999987641       02567788888


Q ss_pred             cCcccccc
Q psy14331        256 PDSKTLRS  263 (265)
Q Consensus       256 ~~~~~w~~  263 (265)
                      .....|..
T Consensus       300 ~~~~~w~~  307 (482)
T KOG0379|consen  300 LETLVWSK  307 (482)
T ss_pred             ccccceee
Confidence            88888764

>TIGR03547 muta_rot_YjhT mutatrotase, YjhT family

Probab=99.96  E-value=4.9e-28  Score=202.94  Aligned_cols=212  Identities=16%  Similarity=0.158  Sum_probs=147.9

Q ss_pred             HHHHHHHhhcccceEEEeccCCCCCCCceeeEEecCCCEEEEECcEEeCCC-c--e---eeCC-----------------
Q psy14331         23 IVRDIEAEEKRKNKVIEKVVPEPTRRANFSFLAHPDKDQLILFGGEFYDGQ-K--F---VFGS-----------------   79 (265)
Q Consensus        23 ~~~~~~~~d~~~~~w~~~~~~~p~~r~~~~~~~~~~~~~lyv~GG~~~~~~-~--~---~~~~-----------------   79 (265)
                      .++++++||+.+++|..+..++|.+|.+|+++.+ .+++||++||...... .  .   ....                 
T Consensus        83 ~~~~v~~Yd~~~~~W~~~~~~~p~~~~~~~~~~~-~~g~IYviGG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  161 (346)
T TIGR03547        83 VFDDVYRYDPKKNSWQKLDTRSPVGLLGASGFSL-HNGQAYFTGGVNKNIFDGYFADLSAADKDSEPKDKLIAAYFSQPP  161 (346)
T ss_pred             ecccEEEEECCCCEEecCCCCCCCcccceeEEEE-eCCEEEEEcCcChHHHHHHHhhHhhcCccchhhhhhHHHHhCCCh
Confidence            4678999999999999844356777877776622 4999999999531100 0  0   0000                 


Q ss_pred             --CcccCceEEEEe----eecCCCCCC-CccccceEEEecCCCEEEEEcCcccCCCccccccCCceeEEE--cCCCcEEE
Q psy14331         80 --PKALDHLILMNL----FVSAPGAPP-PRCSHQMVALSADKGQLWMFGGEFSSASESQFHHYKDLWVFR--MGEKKWEK  150 (265)
Q Consensus        80 --~~~~~~~~~yd~----w~~~~~~p~-~r~~~~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~~~yd--~~~~~W~~  150 (265)
                        ...++++++||+    |...++||. +|..++++.+   +++|||+||......     ...+++.|+  +.+++|+.
T Consensus       162 ~~~~~~~~v~~YDp~t~~W~~~~~~p~~~r~~~~~~~~---~~~iyv~GG~~~~~~-----~~~~~~~y~~~~~~~~W~~  233 (346)
T TIGR03547       162 EDYFWNKNVLSYDPSTNQWRNLGENPFLGTAGSAIVHK---GNKLLLINGEIKPGL-----RTAEVKQYLFTGGKLEWNK  233 (346)
T ss_pred             hHcCccceEEEEECCCCceeECccCCCCcCCCceEEEE---CCEEEEEeeeeCCCc-----cchheEEEEecCCCceeee
Confidence              001478999999    999999996 6888887777   899999999754321     134566665  57789999


Q ss_pred             EecCCCCC-----CCcCceEEEECCEEEEEcCccCCCCc-------------cccCCceEEEEcCCCceEEeccCCCCCC
Q psy14331        151 IVCKDTPP-----SRSGHRMIALKKHLVVFGGFHDNLRE-------------AKYYNDVHIFDLETYAWKKIEPLGAGPA  212 (265)
Q Consensus       151 ~~~~~~p~-----~~~~~~~~~~~~~iyv~GG~~~~~~~-------------~~~~~~v~~y~~~~~~W~~~~~~~~~p~  212 (265)
                      +++++.|.     .+..|++++++++|||+||.+.....             ......+++||+++++|+.+.++   |.
T Consensus       234 ~~~m~~~r~~~~~~~~~~~a~~~~~~Iyv~GG~~~~~~~~~~~~~~~~~~~~~~~~~~~e~yd~~~~~W~~~~~l---p~  310 (346)
T TIGR03547       234 LPPLPPPKSSSQEGLAGAFAGISNGVLLVAGGANFPGAQENYKNGKLYAHEGLIKAWSSEVYALDNGKWSKVGKL---PQ  310 (346)
T ss_pred             cCCCCCCCCCccccccEEeeeEECCEEEEeecCCCCCchhhhhcCCccccCCCCceeEeeEEEecCCcccccCCC---CC
Confidence            98875321     12355577889999999998532110             01124689999999999999885   77


Q ss_pred             CCCCceEEEeCCCeEEEEcCccccccccccccceeeceEEEEe
Q psy14331        213 PRSGCQMAATPDGKILISGGYSKQSVKKDVDKGIVHTDTFLLT  255 (265)
Q Consensus       213 ~~~~~~~~~~~~~~iyi~GG~~~~~~~~~~~~~~~~~~~w~~~  255 (265)
                      +|..++++++ +++|||+||.+...        ...++++.+.
T Consensus       311 ~~~~~~~~~~-~~~iyv~GG~~~~~--------~~~~~v~~~~  344 (346)
T TIGR03547       311 GLAYGVSVSW-NNGVLLIGGENSGG--------KAVTDVYLLS  344 (346)
T ss_pred             CceeeEEEEc-CCEEEEEeccCCCC--------CEeeeEEEEE
Confidence            8887776555 99999999987543        2455666553

Members of this protein family contain multiple copies of the beta-propeller-forming Kelch repeat. All are full-length homologs to YjhT of Escherichia coli, which has been identified as a mutarotase for sialic acid. This protein improves bacterial ability to obtain host sialic acid, and thus serves as a virulence factor. Some bacteria carry what appears to be a cyclically permuted homolog of this protein.

>PRK14131 N-acetylneuraminic acid mutarotase; Provisional

Probab=99.96  E-value=5.4e-28  Score=204.31  Aligned_cols=217  Identities=18%  Similarity=0.179  Sum_probs=152.5

Q ss_pred             HHHHHHHhhcccceEEEeccCCCCCCCceeeEEecCCCEEEEECcEEeCCCce----------------e-----e----
Q psy14331         23 IVRDIEAEEKRKNKVIEKVVPEPTRRANFSFLAHPDKDQLILFGGEFYDGQKF----------------V-----F----   77 (265)
Q Consensus        23 ~~~~~~~~d~~~~~w~~~~~~~p~~r~~~~~~~~~~~~~lyv~GG~~~~~~~~----------------~-----~----   77 (265)
                      .++++++||+.+++|..+....|.++.+|+++++ .+++||++||........                .     +    
T Consensus       104 ~~~~v~~YD~~~n~W~~~~~~~p~~~~~~~~~~~-~~~~IYv~GG~~~~~~~~~~~d~~~~~~~~~~~~~i~~~~~~~~~  182 (376)
T PRK14131        104 VFDDVYKYDPKTNSWQKLDTRSPVGLAGHVAVSL-HNGKAYITGGVNKNIFDGYFEDLAAAGKDKTPKDKINDAYFDKKP  182 (376)
T ss_pred             EcccEEEEeCCCCEEEeCCCCCCCcccceEEEEe-eCCEEEEECCCCHHHHHHHHhhhhhcccchhhhhhhHHHHhcCCh
Confidence            4678999999999999944345777777876662 389999999953210000                0     0    


Q ss_pred             CCCcccCceEEEEe----eecCCCCCC-CccccceEEEecCCCEEEEEcCcccCCCccccccCCcee--EEEcCCCcEEE
Q psy14331         78 GSPKALDHLILMNL----FVSAPGAPP-PRCSHQMVALSADKGQLWMFGGEFSSASESQFHHYKDLW--VFRMGEKKWEK  150 (265)
Q Consensus        78 ~~~~~~~~~~~yd~----w~~~~~~p~-~r~~~~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~~--~yd~~~~~W~~  150 (265)
                      ......+++++||+    |...+++|. +|..|+++.+   +++|||+||....+..     ..+++  .||+++++|+.
T Consensus       183 ~~~~~~~~v~~YD~~t~~W~~~~~~p~~~~~~~a~v~~---~~~iYv~GG~~~~~~~-----~~~~~~~~~~~~~~~W~~  254 (376)
T PRK14131        183 EDYFFNKEVLSYDPSTNQWKNAGESPFLGTAGSAVVIK---GNKLWLINGEIKPGLR-----TDAVKQGKFTGNNLKWQK  254 (376)
T ss_pred             hhcCcCceEEEEECCCCeeeECCcCCCCCCCcceEEEE---CCEEEEEeeeECCCcC-----ChhheEEEecCCCcceee
Confidence            00001478999999    999999996 6777777766   8999999997543321     34444  56778999999


Q ss_pred             EecCCCCCCCc--------CceEEEECCEEEEEcCccCCCCc-------------cccCCceEEEEcCCCceEEeccCCC
Q psy14331        151 IVCKDTPPSRS--------GHRMIALKKHLVVFGGFHDNLRE-------------AKYYNDVHIFDLETYAWKKIEPLGA  209 (265)
Q Consensus       151 ~~~~~~p~~~~--------~~~~~~~~~~iyv~GG~~~~~~~-------------~~~~~~v~~y~~~~~~W~~~~~~~~  209 (265)
                      +++++  .+|.        ++.+++++++|||+||.+.....             ......+++||+++++|+.+..   
T Consensus       255 ~~~~p--~~~~~~~~~~~~~~~a~~~~~~iyv~GG~~~~~~~~~~~~~~~~~~~~~~~~~~~e~yd~~~~~W~~~~~---  329 (376)
T PRK14131        255 LPDLP--PAPGGSSQEGVAGAFAGYSNGVLLVAGGANFPGARENYQNGKLYAHEGLKKSWSDEIYALVNGKWQKVGE---  329 (376)
T ss_pred             cCCCC--CCCcCCcCCccceEeceeECCEEEEeeccCCCCChhhhhcCCcccccCCcceeehheEEecCCcccccCc---
Confidence            98774  4432        23356779999999997542210             0011246789999999999887   


Q ss_pred             CCCCCCCceEEEeCCCeEEEEcCccccccccccccceeeceEEEEecCccccc
Q psy14331        210 GPAPRSGCQMAATPDGKILISGGYSKQSVKKDVDKGIVHTDTFLLTPDSKTLR  262 (265)
Q Consensus       210 ~p~~~~~~~~~~~~~~~iyi~GG~~~~~~~~~~~~~~~~~~~w~~~~~~~~w~  262 (265)
                      +|.+|..++++++ +++|||+||.....        ...++++.|.+..+.++
T Consensus       330 lp~~r~~~~av~~-~~~iyv~GG~~~~~--------~~~~~v~~~~~~~~~~~  373 (376)
T PRK14131        330 LPQGLAYGVSVSW-NNGVLLIGGETAGG--------KAVSDVTLLSWDGKKLT  373 (376)
T ss_pred             CCCCccceEEEEe-CCEEEEEcCCCCCC--------cEeeeEEEEEEcCCEEE
Confidence            4888988877666 99999999986432        35667888887776654

>KOG0379|consensus

Probab=99.96  E-value=8.9e-28  Score=207.57  Aligned_cols=191  Identities=28%  Similarity=0.520  Sum_probs=162.1

Q ss_pred             cCCCCCCCceeeEEecCCCEEEEECcEEeCCCceeeCCCcccCceEEEEe----eec---CCCCCCCccccceEEEecCC
Q psy14331         42 VPEPTRRANFSFLAHPDKDQLILFGGEFYDGQKFVFGSPKALDHLILMNL----FVS---APGAPPPRCSHQMVALSADK  114 (265)
Q Consensus        42 ~~~p~~r~~~~~~~~~~~~~lyv~GG~~~~~~~~~~~~~~~~~~~~~yd~----w~~---~~~~p~~r~~~~~~~~~~~~  114 (265)
                      ...|.+|..|+++.+  ++++|||||........       -.++|++|.    |..   ....|.+|++|+++++   +
T Consensus        55 ~~~p~~R~~hs~~~~--~~~~~vfGG~~~~~~~~-------~~dl~~~d~~~~~w~~~~~~g~~p~~r~g~~~~~~---~  122 (482)
T KOG0379|consen   55 GVGPIPRAGHSAVLI--GNKLYVFGGYGSGDRLT-------DLDLYVLDLESQLWTKPAATGDEPSPRYGHSLSAV---G  122 (482)
T ss_pred             CCCcchhhccceeEE--CCEEEEECCCCCCCccc-------cceeEEeecCCcccccccccCCCCCcccceeEEEE---C
Confidence            357899999999997  99999999963333321       115999999    543   3446789999999999   8


Q ss_pred             CEEEEEcCcccCCCccccccCCceeEEEcCCCcEEEEecCC-CCCCCcCceEEEECCEEEEEcCccCCCCccccCCceEE
Q psy14331        115 GQLWMFGGEFSSASESQFHHYKDLWVFRMGEKKWEKIVCKD-TPPSRSGHRMIALKKHLVVFGGFHDNLREAKYYNDVHI  193 (265)
Q Consensus       115 ~~iyv~GG~~~~~~~~~~~~~~~~~~yd~~~~~W~~~~~~~-~p~~~~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~v~~  193 (265)
                      ++||++||.....     ..+++++.||+.+++|..+.+.. .|++|.+|+++++++++|||||.+....   ..+++|+
T Consensus       123 ~~l~lfGG~~~~~-----~~~~~l~~~d~~t~~W~~l~~~~~~P~~r~~Hs~~~~g~~l~vfGG~~~~~~---~~ndl~i  194 (482)
T KOG0379|consen  123 DKLYLFGGTDKKY-----RNLNELHSLDLSTRTWSLLSPTGDPPPPRAGHSATVVGTKLVVFGGIGGTGD---SLNDLHI  194 (482)
T ss_pred             CeEEEEccccCCC-----CChhheEeccCCCCcEEEecCcCCCCCCcccceEEEECCEEEEECCccCccc---ceeeeee
Confidence            9999999987522     34789999999999999998887 4999999999999999999999977652   5899999


Q ss_pred             EEcCCCceEEeccCCCCCCCCCCceEEEeCCCeEEEEcCcc-ccccccccccceeeceEEEEecCccccc
Q psy14331        194 FDLETYAWKKIEPLGAGPAPRSGCQMAATPDGKILISGGYS-KQSVKKDVDKGIVHTDTFLLTPDSKTLR  262 (265)
Q Consensus       194 y~~~~~~W~~~~~~~~~p~~~~~~~~~~~~~~~iyi~GG~~-~~~~~~~~~~~~~~~~~w~~~~~~~~w~  262 (265)
                      ||+.+.+|.++...+..|.+|.+|+++++ +++++|+||.+ .+         ...+|+|.+|+.+..|.
T Consensus       195 ~d~~~~~W~~~~~~g~~P~pR~gH~~~~~-~~~~~v~gG~~~~~---------~~l~D~~~ldl~~~~W~  254 (482)
T KOG0379|consen  195 YDLETSTWSELDTQGEAPSPRYGHAMVVV-GNKLLVFGGGDDGD---------VYLNDVHILDLSTWEWK  254 (482)
T ss_pred             eccccccceecccCCCCCCCCCCceEEEE-CCeEEEEeccccCC---------ceecceEeeecccceee
Confidence            99999999999999999999999999888 89999998887 33         37889999999999887

>TIGR03547 muta_rot_YjhT mutatrotase, YjhT family

Probab=99.96  E-value=1.6e-27  Score=199.77  Aligned_cols=171  Identities=20%  Similarity=0.309  Sum_probs=132.5

Q ss_pred             cCCCCCCCceeeEEecCCCEEEEECcEEeCCCceeeCCCcccCceEEEEe------eecCCCCC-CCccccceEEEecCC
Q psy14331         42 VPEPTRRANFSFLAHPDKDQLILFGGEFYDGQKFVFGSPKALDHLILMNL------FVSAPGAP-PPRCSHQMVALSADK  114 (265)
Q Consensus        42 ~~~p~~r~~~~~~~~~~~~~lyv~GG~~~~~~~~~~~~~~~~~~~~~yd~------w~~~~~~p-~~r~~~~~~~~~~~~  114 (265)
                      +++|.+|..++++++  +++|||+||.  .           .+++++||+      |..+++|| .+|..++++++   +
T Consensus         2 ~~lp~~~~~~~~~~~--~~~vyv~GG~--~-----------~~~~~~~d~~~~~~~W~~l~~~p~~~R~~~~~~~~---~   63 (346)
T TIGR03547         2 PDLPVGFKNGTGAII--GDKVYVGLGS--A-----------GTSWYKLDLKKPSKGWQKIADFPGGPRNQAVAAAI---D   63 (346)
T ss_pred             CCCCccccCceEEEE--CCEEEEEccc--c-----------CCeeEEEECCCCCCCceECCCCCCCCcccceEEEE---C
Confidence            468899998877676  9999999994  1           257889985      99999999 58999988887   8


Q ss_pred             CEEEEEcCcccCCCccccccCCceeEEEcCCCcEEEEecCCCCCCCcCceEE-EECCEEEEEcCccCCCC----------
Q psy14331        115 GQLWMFGGEFSSASESQFHHYKDLWVFRMGEKKWEKIVCKDTPPSRSGHRMI-ALKKHLVVFGGFHDNLR----------  183 (265)
Q Consensus       115 ~~iyv~GG~~~~~~~~~~~~~~~~~~yd~~~~~W~~~~~~~~p~~~~~~~~~-~~~~~iyv~GG~~~~~~----------  183 (265)
                      ++|||+||............++++++||+.+++|+.++. ..|.+|.+|+++ +.+++||++||.+....          
T Consensus        64 ~~iYv~GG~~~~~~~~~~~~~~~v~~Yd~~~~~W~~~~~-~~p~~~~~~~~~~~~~g~IYviGG~~~~~~~~~~~~~~~~  142 (346)
T TIGR03547        64 GKLYVFGGIGKANSEGSPQVFDDVYRYDPKKNSWQKLDT-RSPVGLLGASGFSLHNGQAYFTGGVNKNIFDGYFADLSAA  142 (346)
T ss_pred             CEEEEEeCCCCCCCCCcceecccEEEEECCCCEEecCCC-CCCCcccceeEEEEeCCEEEEEcCcChHHHHHHHhhHhhc
Confidence            999999997533211111246889999999999999974 346777777776 68999999999853210          


Q ss_pred             --------------------ccccCCceEEEEcCCCceEEeccCCCCCC-CCCCceEEEeCCCeEEEEcCccc
Q psy14331        184 --------------------EAKYYNDVHIFDLETYAWKKIEPLGAGPA-PRSGCQMAATPDGKILISGGYSK  235 (265)
Q Consensus       184 --------------------~~~~~~~v~~y~~~~~~W~~~~~~~~~p~-~~~~~~~~~~~~~~iyi~GG~~~  235 (265)
                                          .....+++++||+.+++|+.+.++   |. +|.+++++++ +++|||+||...
T Consensus       143 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~YDp~t~~W~~~~~~---p~~~r~~~~~~~~-~~~iyv~GG~~~  211 (346)
T TIGR03547       143 DKDSEPKDKLIAAYFSQPPEDYFWNKNVLSYDPSTNQWRNLGEN---PFLGTAGSAIVHK-GNKLLLINGEIK  211 (346)
T ss_pred             CccchhhhhhHHHHhCCChhHcCccceEEEEECCCCceeECccC---CCCcCCCceEEEE-CCEEEEEeeeeC
Confidence                                001247899999999999999885   54 6778887766 899999999864

Members of this protein family contain multiple copies of the beta-propeller-forming Kelch repeat. All are full-length homologs to YjhT of Escherichia coli, which has been identified as a mutarotase for sialic acid. This protein improves bacterial ability to obtain host sialic acid, and thus serves as a virulence factor. Some bacteria carry what appears to be a cyclically permuted homolog of this protein.

>PRK14131 N-acetylneuraminic acid mutarotase; Provisional

Probab=99.95  E-value=3.6e-26  Score=193.26  Aligned_cols=177  Identities=19%  Similarity=0.328  Sum_probs=133.9

Q ss_pred             eEEEeccCCCCCCCceeeEEecCCCEEEEECcEEeCCCceeeCCCcccCceEEEEe------eecCCCCC-CCccccceE
Q psy14331         36 KVIEKVVPEPTRRANFSFLAHPDKDQLILFGGEFYDGQKFVFGSPKALDHLILMNL------FVSAPGAP-PPRCSHQMV  108 (265)
Q Consensus        36 ~w~~~~~~~p~~r~~~~~~~~~~~~~lyv~GG~~~~~~~~~~~~~~~~~~~~~yd~------w~~~~~~p-~~r~~~~~~  108 (265)
                      .+.. .+++|.+|..++.+++  +++|||+||.  .           .+.+++||+      |.+.+++| .+|..++++
T Consensus        18 ~~~~-l~~lP~~~~~~~~~~~--~~~iyv~gG~--~-----------~~~~~~~d~~~~~~~W~~l~~~p~~~r~~~~~v   81 (376)
T PRK14131         18 NAEQ-LPDLPVPFKNGTGAID--NNTVYVGLGS--A-----------GTSWYKLDLNAPSKGWTKIAAFPGGPREQAVAA   81 (376)
T ss_pred             eccc-CCCCCcCccCCeEEEE--CCEEEEEeCC--C-----------CCeEEEEECCCCCCCeEECCcCCCCCcccceEE
Confidence            3444 6789999888877775  9999999993  1           245788886      99999998 589888888


Q ss_pred             EEecCCCEEEEEcCcccCCCccccccCCceeEEEcCCCcEEEEecCCCCCCCcCceEEE-ECCEEEEEcCccCCC-----
Q psy14331        109 ALSADKGQLWMFGGEFSSASESQFHHYKDLWVFRMGEKKWEKIVCKDTPPSRSGHRMIA-LKKHLVVFGGFHDNL-----  182 (265)
Q Consensus       109 ~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~~~yd~~~~~W~~~~~~~~p~~~~~~~~~~-~~~~iyv~GG~~~~~-----  182 (265)
                      .+   +++|||+||............++++++||+.+++|+.++.. .|.++.+|++++ .+++||++||.....     
T Consensus        82 ~~---~~~IYV~GG~~~~~~~~~~~~~~~v~~YD~~~n~W~~~~~~-~p~~~~~~~~~~~~~~~IYv~GG~~~~~~~~~~  157 (376)
T PRK14131         82 FI---DGKLYVFGGIGKTNSEGSPQVFDDVYKYDPKTNSWQKLDTR-SPVGLAGHVAVSLHNGKAYITGGVNKNIFDGYF  157 (376)
T ss_pred             EE---CCEEEEEcCCCCCCCCCceeEcccEEEEeCCCCEEEeCCCC-CCCcccceEEEEeeCCEEEEECCCCHHHHHHHH
Confidence            77   89999999976411111112368999999999999999753 367777788777 799999999975310     


Q ss_pred             -------------------------CccccCCceEEEEcCCCceEEeccCCCCCC-CCCCceEEEeCCCeEEEEcCcccc
Q psy14331        183 -------------------------REAKYYNDVHIFDLETYAWKKIEPLGAGPA-PRSGCQMAATPDGKILISGGYSKQ  236 (265)
Q Consensus       183 -------------------------~~~~~~~~v~~y~~~~~~W~~~~~~~~~p~-~~~~~~~~~~~~~~iyi~GG~~~~  236 (265)
                                               ......+++++||+.+++|+.+.++   |. +|.+++++.+ +++|||+||....
T Consensus       158 ~d~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~v~~YD~~t~~W~~~~~~---p~~~~~~~a~v~~-~~~iYv~GG~~~~  233 (376)
T PRK14131        158 EDLAAAGKDKTPKDKINDAYFDKKPEDYFFNKEVLSYDPSTNQWKNAGES---PFLGTAGSAVVIK-GNKLWLINGEIKP  233 (376)
T ss_pred             hhhhhcccchhhhhhhHHHHhcCChhhcCcCceEEEEECCCCeeeECCcC---CCCCCCcceEEEE-CCEEEEEeeeECC
Confidence                                     0001357899999999999998875   53 6777777666 8999999997543

>PHA02790 Kelch-like protein; Provisional

Probab=99.95  E-value=6e-26  Score=197.10  Aligned_cols=164  Identities=15%  Similarity=0.221  Sum_probs=136.0

Q ss_pred             CCCEEEEECcEEeCCCceeeCCCcccCceEEEEe----eecCCCCCCCccccceEEEecCCCEEEEEcCcccCCCccccc
Q psy14331         58 DKDQLILFGGEFYDGQKFVFGSPKALDHLILMNL----FVSAPGAPPPRCSHQMVALSADKGQLWMFGGEFSSASESQFH  133 (265)
Q Consensus        58 ~~~~lyv~GG~~~~~~~~~~~~~~~~~~~~~yd~----w~~~~~~p~~r~~~~~~~~~~~~~~iyv~GG~~~~~~~~~~~  133 (265)
                      .++.||++||.  +...       ..+.+++||+    |...++||.+|..++++.+   +++||++||...        
T Consensus       270 ~~~~lyviGG~--~~~~-------~~~~v~~Ydp~~~~W~~~~~m~~~r~~~~~v~~---~~~iYviGG~~~--------  329 (480)
T PHA02790        270 VGEVVYLIGGW--MNNE-------IHNNAIAVNYISNNWIPIPPMNSPRLYASGVPA---NNKLYVVGGLPN--------  329 (480)
T ss_pred             ECCEEEEEcCC--CCCC-------cCCeEEEEECCCCEEEECCCCCchhhcceEEEE---CCEEEEECCcCC--------
Confidence            38999999995  2221       1688999999    9999999999999988877   999999999642        


Q ss_pred             cCCceeEEEcCCCcEEEEecCCCCCCCcCceEEEECCEEEEEcCccCCCCccccCCceEEEEcCCCceEEeccCCCCCCC
Q psy14331        134 HYKDLWVFRMGEKKWEKIVCKDTPPSRSGHRMIALKKHLVVFGGFHDNLREAKYYNDVHIFDLETYAWKKIEPLGAGPAP  213 (265)
Q Consensus       134 ~~~~~~~yd~~~~~W~~~~~~~~p~~~~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~v~~y~~~~~~W~~~~~~~~~p~~  213 (265)
                       .+++++||+.+++|+.++++  |.+|..|++++++++||++||.+..      .+.+++|||.+++|+.++++   |.+
T Consensus       330 -~~sve~ydp~~n~W~~~~~l--~~~r~~~~~~~~~g~IYviGG~~~~------~~~ve~ydp~~~~W~~~~~m---~~~  397 (480)
T PHA02790        330 -PTSVERWFHGDAAWVNMPSL--LKPRCNPAVASINNVIYVIGGHSET------DTTTEYLLPNHDQWQFGPST---YYP  397 (480)
T ss_pred             -CCceEEEECCCCeEEECCCC--CCCCcccEEEEECCEEEEecCcCCC------CccEEEEeCCCCEEEeCCCC---CCc
Confidence             25689999999999999877  5899999999999999999997543      36789999999999999884   788


Q ss_pred             CCCceEEEeCCCeEEEEcCccccccccccccceeeceEEEEecCccccc
Q psy14331        214 RSGCQMAATPDGKILISGGYSKQSVKKDVDKGIVHTDTFLLTPDSKTLR  262 (265)
Q Consensus       214 ~~~~~~~~~~~~~iyi~GG~~~~~~~~~~~~~~~~~~~w~~~~~~~~w~  262 (265)
                      |..++++++ +++||++||.        .+.|++..+.|..-+++..-|
T Consensus       398 r~~~~~~~~-~~~IYv~GG~--------~e~ydp~~~~W~~~~~m~~~r  437 (480)
T PHA02790        398 HYKSCALVF-GRRLFLVGRN--------AEFYCESSNTWTLIDDPIYPR  437 (480)
T ss_pred             cccceEEEE-CCEEEEECCc--------eEEecCCCCcEeEcCCCCCCc
Confidence            988888777 9999999984        345777778887776665433

>KOG4152|consensus

Probab=99.91  E-value=6.1e-23  Score=169.40  Aligned_cols=221  Identities=22%  Similarity=0.406  Sum_probs=164.9

Q ss_pred             HHHHHHHhhcccceEEEec--cCCCCCCCceeeEEecCCCEEEEECcEEeCCCceeeCCCcccCceEEEEe----eecC-
Q psy14331         23 IVRDIEAEEKRKNKVIEKV--VPEPTRRANFSFLAHPDKDQLILFGGEFYDGQKFVFGSPKALDHLILMNL----FVSA-   95 (265)
Q Consensus        23 ~~~~~~~~d~~~~~w~~~~--~~~p~~r~~~~~~~~~~~~~lyv~GG~~~~~~~~~~~~~~~~~~~~~yd~----w~~~-   95 (265)
                      +...+..||..++.|....  ...|.+-+.|..+.  ++.+||+|||...-+..        +|++|.+..    |..+ 
T Consensus        55 iiDELHvYNTatnqWf~PavrGDiPpgcAA~Gfvc--dGtrilvFGGMvEYGkY--------sNdLYELQasRWeWkrlk  124 (830)
T KOG4152|consen   55 IIDELHVYNTATNQWFAPAVRGDIPPGCAAFGFVC--DGTRILVFGGMVEYGKY--------SNDLYELQASRWEWKRLK  124 (830)
T ss_pred             chhhhhhhccccceeecchhcCCCCCchhhcceEe--cCceEEEEccEeeeccc--------cchHHHhhhhhhhHhhcC
Confidence            6788999999999997532  25566666666555  59999999996444443        788887777    4433 


Q ss_pred             ------CCCCCCccccceEEEecCCCEEEEEcCcccC---CCccccccCCceeEEEcCCC----cEEEEecCC-CCCCCc
Q psy14331         96 ------PGAPPPRCSHQMVALSADKGQLWMFGGEFSS---ASESQFHHYKDLWVFRMGEK----KWEKIVCKD-TPPSRS  161 (265)
Q Consensus        96 ------~~~p~~r~~~~~~~~~~~~~~iyv~GG~~~~---~~~~~~~~~~~~~~yd~~~~----~W~~~~~~~-~p~~~~  161 (265)
                            ...|-||.+|+..++   +++-|+|||...+   ..++.-.+++|++.+++.-+    .|...-..+ .|.+|.
T Consensus       125 p~~p~nG~pPCPRlGHSFsl~---gnKcYlFGGLaNdseDpknNvPrYLnDlY~leL~~Gsgvv~W~ip~t~Gv~P~pRE  201 (830)
T KOG4152|consen  125 PKTPKNGPPPCPRLGHSFSLV---GNKCYLFGGLANDSEDPKNNVPRYLNDLYILELRPGSGVVAWDIPITYGVLPPPRE  201 (830)
T ss_pred             CCCCCCCCCCCCccCceeEEe---ccEeEEeccccccccCcccccchhhcceEEEEeccCCceEEEecccccCCCCCCcc
Confidence                  234568999999888   8999999998432   22334467999999998744    488765444 789999


Q ss_pred             CceEEEE------CCEEEEEcCccCCCCccccCCceEEEEcCCCceEEeccCCCCCCCCCCceEEEeCCCeEEEEcCccc
Q psy14331        162 GHRMIAL------KKHLVVFGGFHDNLREAKYYNDVHIFDLETYAWKKIEPLGAGPAPRSGCQMAATPDGKILISGGYSK  235 (265)
Q Consensus       162 ~~~~~~~------~~~iyv~GG~~~~~~~~~~~~~v~~y~~~~~~W~~~~~~~~~p~~~~~~~~~~~~~~~iyi~GG~~~  235 (265)
                      .|++++.      ..++||+||.++..     +.++|.+|+++.+|.+....+..|.+|+-|++..+ ++++|||||.-.
T Consensus       202 SHTAViY~eKDs~~skmvvyGGM~G~R-----LgDLW~Ldl~Tl~W~kp~~~G~~PlPRSLHsa~~I-GnKMyvfGGWVP  275 (830)
T KOG4152|consen  202 SHTAVIYTEKDSKKSKMVVYGGMSGCR-----LGDLWTLDLDTLTWNKPSLSGVAPLPRSLHSATTI-GNKMYVFGGWVP  275 (830)
T ss_pred             cceeEEEEeccCCcceEEEEccccccc-----ccceeEEecceeecccccccCCCCCCcccccceee-cceeEEecceee
Confidence            9999887      23899999998865     78999999999999999999989999999998877 999999999753


Q ss_pred             cc-----cccccccceeeceEEEEecCccccc
Q psy14331        236 QS-----VKKDVDKGIVHTDTFLLTPDSKTLR  262 (265)
Q Consensus       236 ~~-----~~~~~~~~~~~~~~w~~~~~~~~w~  262 (265)
                      ..     .........+.+..=+++.++..|.
T Consensus       276 l~~~~~~~~~hekEWkCTssl~clNldt~~W~  307 (830)
T KOG4152|consen  276 LVMDDVKVATHEKEWKCTSSLACLNLDTMAWE  307 (830)
T ss_pred             eeccccccccccceeeeccceeeeeecchhee
Confidence            21     1111222334444445666666775

>KOG2437|consensus

Probab=99.67  E-value=5e-17  Score=134.37  Aligned_cols=195  Identities=19%  Similarity=0.364  Sum_probs=146.2

Q ss_pred             hcccceEEEecc---------CCCCCCCceeeEEecCCCEEEEECcEEeCCCceeeCCCcccCceEEEEe----eecC--
Q psy14331         31 EKRKNKVIEKVV---------PEPTRRANFSFLAHPDKDQLILFGGEFYDGQKFVFGSPKALDHLILMNL----FVSA--   95 (265)
Q Consensus        31 d~~~~~w~~~~~---------~~p~~r~~~~~~~~~~~~~lyv~GG~~~~~~~~~~~~~~~~~~~~~yd~----w~~~--   95 (265)
                      .+-+..|.+...         .-|..|.+|+++..+..+.+|+.||  .++...       +.++|.|+.    |+..  
T Consensus       235 ~ey~~~W~~i~~~~~~~~~~~~~p~~RgGHQMV~~~~~~CiYLYGG--WdG~~~-------l~DFW~Y~v~e~~W~~iN~  305 (723)
T KOG2437|consen  235 QEYKPRWSQIIPKSTKGDGEDNRPGMRGGHQMVIDVQTECVYLYGG--WDGTQD-------LADFWAYSVKENQWTCINR  305 (723)
T ss_pred             ccccccccccCchhhcccccccCccccCcceEEEeCCCcEEEEecC--cccchh-------HHHHHhhcCCcceeEEeec
Confidence            445566866433         3488999999999877789999999  677665       789999999    7643  


Q ss_pred             -CCCCCCccccceEEEecCCCEEEEEcCcccCCCccccccCCceeEEEcCCCcEEEEecC----CCCCCCcCceEEEECC
Q psy14331         96 -PGAPPPRCSHQMVALSADKGQLWMFGGEFSSASESQFHHYKDLWVFRMGEKKWEKIVCK----DTPPSRSGHRMIALKK  170 (265)
Q Consensus        96 -~~~p~~r~~~~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~~~yd~~~~~W~~~~~~----~~p~~~~~~~~~~~~~  170 (265)
                       ...|..|+.|.++. +....+||+.|-.........+...+++|+||..++.|..+.-.    +.|...+.|.|++.++
T Consensus       306 ~t~~PG~RsCHRMVi-d~S~~KLYLlG~Y~~sS~r~~~s~RsDfW~FDi~~~~W~~ls~dt~~dGGP~~vfDHqM~Vd~~  384 (723)
T KOG2437|consen  306 DTEGPGARSCHRMVI-DISRRKLYLLGRYLDSSVRNSKSLRSDFWRFDIDTNTWMLLSEDTAADGGPKLVFDHQMCVDSE  384 (723)
T ss_pred             CCCCCcchhhhhhhh-hhhHhHHhhhhhccccccccccccccceEEEecCCceeEEecccccccCCcceeecceeeEecC
Confidence             33788899999874 33446999999876655555556688999999999999988533    2588899999999988


Q ss_pred             E--EEEEcCccCCCCccccCCceEEEEcCCCceEEeccCCC-------CCCCCCCceEEEeCC-CeEEEEcCcccc
Q psy14331        171 H--LVVFGGFHDNLREAKYYNDVHIFDLETYAWKKIEPLGA-------GPAPRSGCQMAATPD-GKILISGGYSKQ  236 (265)
Q Consensus       171 ~--iyv~GG~~~~~~~~~~~~~v~~y~~~~~~W~~~~~~~~-------~p~~~~~~~~~~~~~-~~iyi~GG~~~~  236 (265)
                      +  +|||||..-.... ..+..+|.||.....|+.+.....       ....|.+|.+-...+ +++|++||....
T Consensus       385 k~~iyVfGGr~~~~~e-~~f~GLYaf~~~~~~w~~l~e~~~~~~~vvE~~~sR~ghcmE~~~~n~~ly~fggq~s~  459 (723)
T KOG2437|consen  385 KHMIYVFGGRILTCNE-PQFSGLYAFNCQCQTWKLLREDSCNAGPVVEDIQSRIGHCMEFHSKNRCLYVFGGQRSK  459 (723)
T ss_pred             cceEEEecCeeccCCC-ccccceEEEecCCccHHHHHHHHhhcCcchhHHHHHHHHHHHhcCCCCeEEeccCcccc
Confidence            7  9999998544321 346789999999999997765311       123466666655544 479999997543

>COG3055 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=99.52  E-value=4e-13  Score=107.43  Aligned_cols=174  Identities=19%  Similarity=0.306  Sum_probs=127.7

Q ss_pred             ccCCCCCCCceeeEEecCCCEEEEECcEEeCCCceeeCCCcccCceEEEEe------eecCCCCCC-CccccceEEEecC
Q psy14331         41 VVPEPTRRANFSFLAHPDKDQLILFGGEFYDGQKFVFGSPKALDHLILMNL------FVSAPGAPP-PRCSHQMVALSAD  113 (265)
Q Consensus        41 ~~~~p~~r~~~~~~~~~~~~~lyv~GG~~~~~~~~~~~~~~~~~~~~~yd~------w~~~~~~p~-~r~~~~~~~~~~~  113 (265)
                      .+.+|.+-..-+-+.+  ++.+||-=|  ..           -...+.+|+      |++....|- +|....++++   
T Consensus        30 lPdlPvg~KnG~Ga~i--g~~~YVGLG--s~-----------G~afy~ldL~~~~k~W~~~a~FpG~~rnqa~~a~~---   91 (381)
T COG3055          30 LPDLPVGFKNGAGALI--GDTVYVGLG--SA-----------GTAFYVLDLKKPGKGWTKIADFPGGARNQAVAAVI---   91 (381)
T ss_pred             CCCCCcccccccccee--cceEEEEec--cC-----------CccceehhhhcCCCCceEcccCCCcccccchheee---
Confidence            4556777665555554  889999777  22           246677787      999999885 5777777766   


Q ss_pred             CCEEEEEcCcccCCCccccccCCceeEEEcCCCcEEEEecCCCCCCCcCceEEEECC-EEEEEcCccCCCC---------
Q psy14331        114 KGQLWMFGGEFSSASESQFHHYKDLWVFRMGEKKWEKIVCKDTPPSRSGHRMIALKK-HLVVFGGFHDNLR---------  183 (265)
Q Consensus       114 ~~~iyv~GG~~~~~~~~~~~~~~~~~~yd~~~~~W~~~~~~~~p~~~~~~~~~~~~~-~iyv~GG~~~~~~---------  183 (265)
                      +++||++||...... ......+++++||+.+++|+++.... |....++.++..++ +||++||.+....         
T Consensus        92 ~~kLyvFgG~Gk~~~-~~~~~~nd~Y~y~p~~nsW~kl~t~s-P~gl~G~~~~~~~~~~i~f~GGvn~~if~~yf~dv~~  169 (381)
T COG3055          92 GGKLYVFGGYGKSVS-SSPQVFNDAYRYDPSTNSWHKLDTRS-PTGLVGASTFSLNGTKIYFFGGVNQNIFNGYFEDVGA  169 (381)
T ss_pred             CCeEEEeeccccCCC-CCceEeeeeEEecCCCChhheecccc-ccccccceeEecCCceEEEEccccHHhhhhhHHhhhh
Confidence            999999999865444 22356899999999999999997654 67777788888877 9999999743211         


Q ss_pred             ---------------------ccccCCceEEEEcCCCceEEeccCCCCCCCCCCceEEEeCCCeEEEEcCccccc
Q psy14331        184 ---------------------EAKYYNDVHIFDLETYAWKKIEPLGAGPAPRSGCQMAATPDGKILISGGYSKQS  237 (265)
Q Consensus       184 ---------------------~~~~~~~v~~y~~~~~~W~~~~~~~~~p~~~~~~~~~~~~~~~iyi~GG~~~~~  237 (265)
                                           .+.+..++..|+|.+++|+.+...  +..++++.++ +..++++.++-|.-.+.
T Consensus       170 a~~d~~~~~~i~~~yf~~~~~dy~~n~ev~sy~p~~n~W~~~G~~--pf~~~aGsa~-~~~~n~~~lInGEiKpG  241 (381)
T COG3055         170 AGKDKEAVDKIIAHYFDKKAEDYFFNKEVLSYDPSTNQWRNLGEN--PFYGNAGSAV-VIKGNKLTLINGEIKPG  241 (381)
T ss_pred             hcccHHHHHHHHHHHhCCCHHHhcccccccccccccchhhhcCcC--cccCccCcce-eecCCeEEEEcceecCC
Confidence                                 112446899999999999999864  4566777554 45577788888875443

>COG3055 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=99.49  E-value=1.1e-12  Score=105.03  Aligned_cols=202  Identities=17%  Similarity=0.175  Sum_probs=136.0

Q ss_pred             HHHHHHHHHhhcccceEEEeccCCCCCCCceeeEEecCCCEEEEECcEEeCCCc-------------e----------ee
Q psy14331         21 EKIVRDIEAEEKRKNKVIEKVVPEPTRRANFSFLAHPDKDQLILFGGEFYDGQK-------------F----------VF   77 (265)
Q Consensus        21 ~~~~~~~~~~d~~~~~w~~~~~~~p~~r~~~~~~~~~~~~~lyv~GG~~~~~~~-------------~----------~~   77 (265)
                      .+..++.+.|||++++|..+....|....+++++.. .+.++|++||...+-..             .          ..
T Consensus       109 ~~~~nd~Y~y~p~~nsW~kl~t~sP~gl~G~~~~~~-~~~~i~f~GGvn~~if~~yf~dv~~a~~d~~~~~~i~~~yf~~  187 (381)
T COG3055         109 PQVFNDAYRYDPSTNSWHKLDTRSPTGLVGASTFSL-NGTKIYFFGGVNQNIFNGYFEDVGAAGKDKEAVDKIIAHYFDK  187 (381)
T ss_pred             ceEeeeeEEecCCCChhheeccccccccccceeEec-CCceEEEEccccHHhhhhhHHhhhhhcccHHHHHHHHHHHhCC
Confidence            345678999999999999977788888888888886 45599999995110000             0          00


Q ss_pred             CCC--cccCceEEEEe----eecCCCCC-CCccccceEEEecCCCEEEEEcCcccCCCccccccCCceeEEEcCC--CcE
Q psy14331         78 GSP--KALDHLILMNL----FVSAPGAP-PPRCSHQMVALSADKGQLWMFGGEFSSASESQFHHYKDLWVFRMGE--KKW  148 (265)
Q Consensus        78 ~~~--~~~~~~~~yd~----w~~~~~~p-~~r~~~~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~~~yd~~~--~~W  148 (265)
                      ++.  ....+++.|++    |......| .++++.+.+.-   ++++.++-|+--.+.     .+..+.+++...  -+|
T Consensus       188 ~~~dy~~n~ev~sy~p~~n~W~~~G~~pf~~~aGsa~~~~---~n~~~lInGEiKpGL-----Rt~~~k~~~~~~~~~~w  259 (381)
T COG3055         188 KAEDYFFNKEVLSYDPSTNQWRNLGENPFYGNAGSAVVIK---GNKLTLINGEIKPGL-----RTAEVKQADFGGDNLKW  259 (381)
T ss_pred             CHHHhcccccccccccccchhhhcCcCcccCccCcceeec---CCeEEEEcceecCCc-----cccceeEEEeccCceee
Confidence            001  11567888999    88888776 45666544433   778999988765553     255666777653  479


Q ss_pred             EEEecCCCCCC-----CcCceEEEECCEEEEEcCccCC---------------CCccccCCceEEEEcCCCceEEeccCC
Q psy14331        149 EKIVCKDTPPS-----RSGHRMIALKKHLVVFGGFHDN---------------LREAKYYNDVHIFDLETYAWKKIEPLG  208 (265)
Q Consensus       149 ~~~~~~~~p~~-----~~~~~~~~~~~~iyv~GG~~~~---------------~~~~~~~~~v~~y~~~~~~W~~~~~~~  208 (265)
                      +.+...+.|..     ..++-.-..++.+.+.||..-.               +......++||.+|  .+.|+.+..+ 
T Consensus       260 ~~l~~lp~~~~~~~eGvAGaf~G~s~~~~lv~GGAnF~Ga~~~y~~Gk~~AH~Gl~K~w~~~Vy~~d--~g~Wk~~GeL-  336 (381)
T COG3055         260 LKLSDLPAPIGSNKEGVAGAFSGKSNGEVLVAGGANFPGALKAYKNGKFYAHEGLSKSWNSEVYIFD--NGSWKIVGEL-  336 (381)
T ss_pred             eeccCCCCCCCCCccccceeccceeCCeEEEecCCCChhHHHHHHhcccccccchhhhhhceEEEEc--CCceeeeccc-
Confidence            99876653222     2222233347889999986322               12234567899998  9999999985 


Q ss_pred             CCCCCCCCceEEEeCCCeEEEEcCccccc
Q psy14331        209 AGPAPRSGCQMAATPDGKILISGGYSKQS  237 (265)
Q Consensus       209 ~~p~~~~~~~~~~~~~~~iyi~GG~~~~~  237 (265)
                        |.++..-..+.. ++++|++||.+...
T Consensus       337 --p~~l~YG~s~~~-nn~vl~IGGE~~~G  362 (381)
T COG3055         337 --PQGLAYGVSLSY-NNKVLLIGGETSGG  362 (381)
T ss_pred             --CCCccceEEEec-CCcEEEEccccCCC
Confidence              776665544444 89999999998664

>KOG2437|consensus

Probab=99.37  E-value=1.3e-12  Score=108.67  Aligned_cols=151  Identities=24%  Similarity=0.412  Sum_probs=115.6

Q ss_pred             CCCCccccceEEEecCCCEEEEEcCcccCCCccccccCCceeEEEcCCCcEEEEecCC-CCCCCcCceEEEE--CCEEEE
Q psy14331         98 APPPRCSHQMVALSADKGQLWMFGGEFSSASESQFHHYKDLWVFRMGEKKWEKIVCKD-TPPSRSGHRMIAL--KKHLVV  174 (265)
Q Consensus        98 ~p~~r~~~~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~~~yd~~~~~W~~~~~~~-~p~~~~~~~~~~~--~~~iyv  174 (265)
                      -|..|.+|+++.. ..++.||++||.+..+.      +.++|.|+...+.|..+..-. .|-.|.+|.|+..  ..++|+
T Consensus       257 ~p~~RgGHQMV~~-~~~~CiYLYGGWdG~~~------l~DFW~Y~v~e~~W~~iN~~t~~PG~RsCHRMVid~S~~KLYL  329 (723)
T KOG2437|consen  257 RPGMRGGHQMVID-VQTECVYLYGGWDGTQD------LADFWAYSVKENQWTCINRDTEGPGARSCHRMVIDISRRKLYL  329 (723)
T ss_pred             CccccCcceEEEe-CCCcEEEEecCcccchh------HHHHHhhcCCcceeEEeecCCCCCcchhhhhhhhhhhHhHHhh
Confidence            3667999999866 33469999999987653      899999999999999987665 7899999999887  459999


Q ss_pred             EcCccCCCCc--cccCCceEEEEcCCCceEEeccCC---CCCCCCCCceEEEeCCCe--EEEEcCcccccccccccccee
Q psy14331        175 FGGFHDNLRE--AKYYNDVHIFDLETYAWKKIEPLG---AGPAPRSGCQMAATPDGK--ILISGGYSKQSVKKDVDKGIV  247 (265)
Q Consensus       175 ~GG~~~~~~~--~~~~~~v~~y~~~~~~W~~~~~~~---~~p~~~~~~~~~~~~~~~--iyi~GG~~~~~~~~~~~~~~~  247 (265)
                      .|-.-+....  ...-.++|+||..++.|..+....   ..|...+.|.|++. +++  +||+||+....-      -..
T Consensus       330 lG~Y~~sS~r~~~s~RsDfW~FDi~~~~W~~ls~dt~~dGGP~~vfDHqM~Vd-~~k~~iyVfGGr~~~~~------e~~  402 (723)
T KOG2437|consen  330 LGRYLDSSVRNSKSLRSDFWRFDIDTNTWMLLSEDTAADGGPKLVFDHQMCVD-SEKHMIYVFGGRILTCN------EPQ  402 (723)
T ss_pred             hhhccccccccccccccceEEEecCCceeEEecccccccCCcceeecceeeEe-cCcceEEEecCeeccCC------Ccc
Confidence            9976443221  233468999999999999887432   24777788999876 555  999999864321      124


Q ss_pred             eceEEEEecCccccc
Q psy14331        248 HTDTFLLTPDSKTLR  262 (265)
Q Consensus       248 ~~~~w~~~~~~~~w~  262 (265)
                      ...+|.|+.....|.
T Consensus       403 f~GLYaf~~~~~~w~  417 (723)
T KOG2437|consen  403 FSGLYAFNCQCQTWK  417 (723)
T ss_pred             ccceEEEecCCccHH
Confidence            556889998888885

>PF13964 Kelch_6: Kelch motif

Probab=99.30  E-value=1.1e-11  Score=73.33  Aligned_cols=50  Identities=40%  Similarity=0.897  Sum_probs=43.7

Q ss_pred             CCcCceEEEECCEEEEEcCccCCCCccccCCceEEEEcCCCceEEeccCCCCCCCC
Q psy14331        159 SRSGHRMIALKKHLVVFGGFHDNLREAKYYNDVHIFDLETYAWKKIEPLGAGPAPR  214 (265)
Q Consensus       159 ~~~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~v~~y~~~~~~W~~~~~~~~~p~~~  214 (265)
                      +|.+|++++++++|||+||....   ....+++++||+++++|++++++   |.+|
T Consensus         1 pR~~~s~v~~~~~iyv~GG~~~~---~~~~~~v~~yd~~t~~W~~~~~m---p~pR   50 (50)
T PF13964_consen    1 PRYGHSAVVVGGKIYVFGGYDNS---GKYSNDVERYDPETNTWEQLPPM---PTPR   50 (50)
T ss_pred             CCccCEEEEECCEEEEECCCCCC---CCccccEEEEcCCCCcEEECCCC---CCCC
Confidence            68899999999999999999774   25689999999999999999985   6665

>PF13964 Kelch_6: Kelch motif

Probab=99.23  E-value=2.9e-11  Score=71.40  Aligned_cols=50  Identities=26%  Similarity=0.503  Sum_probs=42.4

Q ss_pred             CccccceEEEecCCCEEEEEcCcccCCCccccccCCceeEEEcCCCcEEEEecCCCCCCC
Q psy14331        101 PRCSHQMVALSADKGQLWMFGGEFSSASESQFHHYKDLWVFRMGEKKWEKIVCKDTPPSR  160 (265)
Q Consensus       101 ~r~~~~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~~~yd~~~~~W~~~~~~~~p~~~  160 (265)
                      ||..|+++++   +++|||+||.....     ..++++++||+++++|+.+++++  .+|
T Consensus         1 pR~~~s~v~~---~~~iyv~GG~~~~~-----~~~~~v~~yd~~t~~W~~~~~mp--~pR   50 (50)
T PF13964_consen    1 PRYGHSAVVV---GGKIYVFGGYDNSG-----KYSNDVERYDPETNTWEQLPPMP--TPR   50 (50)
T ss_pred             CCccCEEEEE---CCEEEEECCCCCCC-----CccccEEEEcCCCCcEEECCCCC--CCC
Confidence            6889999988   99999999986641     45899999999999999998774  554

>PLN02772 guanylate kinase

Probab=99.08  E-value=1e-09  Score=91.20  Aligned_cols=90  Identities=22%  Similarity=0.328  Sum_probs=76.3

Q ss_pred             CCCCcCceEEEECCEEEEEcCccCCCCccccCCceEEEEcCCCceEEeccCCCCCCCCCCceEEEeCCCeEEEEcCcccc
Q psy14331        157 PPSRSGHRMIALKKHLVVFGGFHDNLREAKYYNDVHIFDLETYAWKKIEPLGAGPAPRSGCQMAATPDGKILISGGYSKQ  236 (265)
Q Consensus       157 p~~~~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~v~~y~~~~~~W~~~~~~~~~p~~~~~~~~~~~~~~~iyi~GG~~~~  236 (265)
                      +.++.+++++.+++++||+||.+...   +..+.+++||+.+.+|......+..|.+|.+|+++++.+++|+|+++... 
T Consensus        22 ~~~~~~~tav~igdk~yv~GG~~d~~---~~~~~v~i~D~~t~~W~~P~V~G~~P~~r~GhSa~v~~~~rilv~~~~~~-   97 (398)
T PLN02772         22 VKPKNRETSVTIGDKTYVIGGNHEGN---TLSIGVQILDKITNNWVSPIVLGTGPKPCKGYSAVVLNKDRILVIKKGSA-   97 (398)
T ss_pred             CCCCCcceeEEECCEEEEEcccCCCc---cccceEEEEECCCCcEecccccCCCCCCCCcceEEEECCceEEEEeCCCC-
Confidence            46888999999999999999976643   34789999999999999999999999999999999998889999987643 


Q ss_pred             ccccccccceeeceEEEEecCccc
Q psy14331        237 SVKKDVDKGIVHTDTFLLTPDSKT  260 (265)
Q Consensus       237 ~~~~~~~~~~~~~~~w~~~~~~~~  260 (265)
                                +.+++|.+..++..
T Consensus        98 ----------~~~~~w~l~~~t~~  111 (398)
T PLN02772         98 ----------PDDSIWFLEVDTPF  111 (398)
T ss_pred             ----------CccceEEEEcCCHH
Confidence                      24678888777653

>PF01344 Kelch_1: Kelch motif; InterPro: IPR006652 Kelch is a 50-residue motif, named after the Drosophila mutant in which it was first identified []

Probab=99.06  E-value=3e-10  Score=66.18  Aligned_cols=46  Identities=20%  Similarity=0.427  Sum_probs=39.8

Q ss_pred             CccccceEEEecCCCEEEEEcCcccCCCccccccCCceeEEEcCCCcEEEEecC
Q psy14331        101 PRCSHQMVALSADKGQLWMFGGEFSSASESQFHHYKDLWVFRMGEKKWEKIVCK  154 (265)
Q Consensus       101 ~r~~~~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~~~yd~~~~~W~~~~~~  154 (265)
                      ||..|+++++   +++||++||.....     ..++++++||+.+++|+.+++|
T Consensus         1 pR~~~~~~~~---~~~iyv~GG~~~~~-----~~~~~v~~yd~~~~~W~~~~~m   46 (47)
T PF01344_consen    1 PRSGHAAVVV---GNKIYVIGGYDGNN-----QPTNSVEVYDPETNTWEELPPM   46 (47)
T ss_dssp             -BBSEEEEEE---TTEEEEEEEBESTS-----SBEEEEEEEETTTTEEEEEEEE
T ss_pred             CCccCEEEEE---CCEEEEEeeecccC-----ceeeeEEEEeCCCCEEEEcCCC
Confidence            6889999988   99999999987722     3589999999999999999876

This sequence motif represents one beta-sheet blade, and several of these repeats can associate to form a beta-propeller. For instance, the motif appears 6 times in Drosophila egg-chamber regulatory protein, creating a 6-bladed beta-propeller. The motif is also found in mouse protein MIPP [] and in a number of poxviruses. In addition, kelch repeats have been recognised in alpha- and beta-scruin [, ], and in galactose oxidase from the fungus Dactylium dendroides [, ]. The structure of galactose oxidase reveals that the repeated sequence corresponds to a 4-stranded anti-parallel beta-sheet motif that forms the repeat unit in a super-barrel structural fold []. The known functions of kelch-containing proteins are diverse: scruin is an actin cross-linking protein; galactose oxidase catalyses the oxidation of the hydroxyl group at the C6 position in D-galactose; neuraminidase hydrolyses sialic acid residues from glycoproteins; and kelch may have a cytoskeletal function, as it is localised to the actin-rich ring canals that connect the 15 nurse cells to the developing oocyte in Drosophila []. Nevertheless, based on the location of the kelch pattern in the catalytic unit in galactose oxidase, functionally important residues have been predicted in glyoxal oxidase []. This entry represents a type of kelch sequence motif that comprises one beta-sheet blade.; GO: 0005515 protein binding; PDB: 2XN4_A 2WOZ_A 3II7_A 4ASC_A 1U6D_X 1ZGK_A 2FLU_X 2VPJ_A 2DYH_A 1X2R_A ....

>PF13415 Kelch_3: Galactose oxidase, central domain

Probab=99.06  E-value=5.9e-10  Score=65.41  Aligned_cols=48  Identities=42%  Similarity=0.769  Sum_probs=40.3

Q ss_pred             CCEEEEEcCccCCCCccccCCceEEEEcCCCceEEeccCCCCCCCCCCceEEE
Q psy14331        169 KKHLVVFGGFHDNLREAKYYNDVHIFDLETYAWKKIEPLGAGPAPRSGCQMAA  221 (265)
Q Consensus       169 ~~~iyv~GG~~~~~~~~~~~~~v~~y~~~~~~W~~~~~~~~~p~~~~~~~~~~  221 (265)
                      +++||||||.+...  ...++++|+||+.+++|+++..   .|.+|.+|++++
T Consensus         1 g~~~~vfGG~~~~~--~~~~nd~~~~~~~~~~W~~~~~---~P~~R~~h~~~~   48 (49)
T PF13415_consen    1 GNKLYVFGGYDDDG--GTRLNDVWVFDLDTNTWTRIGD---LPPPRSGHTATV   48 (49)
T ss_pred             CCEEEEECCcCCCC--CCEecCEEEEECCCCEEEECCC---CCCCccceEEEE
Confidence            57899999998421  2668999999999999999955   699999999875

>PF07646 Kelch_2: Kelch motif; InterPro: IPR011498 Kelch is a 50-residue motif, named after the Drosophila mutant in which it was first identified []

Probab=99.06  E-value=6.3e-10  Score=65.28  Aligned_cols=48  Identities=35%  Similarity=0.708  Sum_probs=40.0

Q ss_pred             CCcCceEEEECCEEEEEcCccCCCCccccCCceEEEEcCCCceEEeccC
Q psy14331        159 SRSGHRMIALKKHLVVFGGFHDNLREAKYYNDVHIFDLETYAWKKIEPL  207 (265)
Q Consensus       159 ~~~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~v~~y~~~~~~W~~~~~~  207 (265)
                      +|.+|++++++++||||||.. ........++++.||+++++|+.++++
T Consensus         1 ~r~~hs~~~~~~kiyv~GG~~-~~~~~~~~~~v~~~d~~t~~W~~~~~~   48 (49)
T PF07646_consen    1 PRYGHSAVVLDGKIYVFGGYG-TDNGGSSSNDVWVFDTETNQWTELSPM   48 (49)
T ss_pred             CccceEEEEECCEEEEECCcc-cCCCCcccceeEEEECCCCEEeecCCC
Confidence            588999999999999999991 111125689999999999999999875

This sequence motif represents one beta-sheet blade, and several of these repeats can associate to form a beta-propeller. For instance, the motif appears 6 times in Drosophila egg-chamber regulatory protein, creating a 6-bladed beta-propeller. The motif is also found in mouse protein MIPP [] and in a number of poxviruses. In addition, kelch repeats have been recognised in alpha- and beta-scruin [, ], and in galactose oxidase from the fungus Dactylium dendroides [, ]. The structure of galactose oxidase reveals that the repeated sequence corresponds to a 4-stranded anti-parallel beta-sheet motif that forms the repeat unit in a super-barrel structural fold []. The known functions of kelch-containing proteins are diverse: scruin is an actin cross-linking protein; galactose oxidase catalyses the oxidation of the hydroxyl group at the C6 position in D-galactose; neuraminidase hydrolyses sialic acid residues from glycoproteins; and kelch may have a cytoskeletal function, as it is localised to the actin-rich ring canals that connect the 15 nurse cells to the developing oocyte in Drosophila []. Nevertheless, based on the location of the kelch pattern in the catalytic unit in galactose oxidase, functionally important residues have been predicted in glyoxal oxidase []. This entry represents a type of kelch sequence motif that comprises one beta-sheet blade.; GO: 0005515 protein binding

>PF01344 Kelch_1: Kelch motif; InterPro: IPR006652 Kelch is a 50-residue motif, named after the Drosophila mutant in which it was first identified []

Probab=99.05  E-value=3.6e-10  Score=65.81  Aligned_cols=46  Identities=33%  Similarity=0.720  Sum_probs=40.5

Q ss_pred             CCcCceEEEECCEEEEEcCccCCCCccccCCceEEEEcCCCceEEeccC
Q psy14331        159 SRSGHRMIALKKHLVVFGGFHDNLREAKYYNDVHIFDLETYAWKKIEPL  207 (265)
Q Consensus       159 ~~~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~v~~y~~~~~~W~~~~~~  207 (265)
                      ||..|++++++++|||+||.....   ...+++++||+.+++|+.++++
T Consensus         1 pR~~~~~~~~~~~iyv~GG~~~~~---~~~~~v~~yd~~~~~W~~~~~m   46 (47)
T PF01344_consen    1 PRSGHAAVVVGNKIYVIGGYDGNN---QPTNSVEVYDPETNTWEELPPM   46 (47)
T ss_dssp             -BBSEEEEEETTEEEEEEEBESTS---SBEEEEEEEETTTTEEEEEEEE
T ss_pred             CCccCEEEEECCEEEEEeeecccC---ceeeeEEEEeCCCCEEEEcCCC
Confidence            588999999999999999998732   5689999999999999999885

This sequence motif represents one beta-sheet blade, and several of these repeats can associate to form a beta-propeller. For instance, the motif appears 6 times in Drosophila egg-chamber regulatory protein, creating a 6-bladed beta-propeller. The motif is also found in mouse protein MIPP [] and in a number of poxviruses. In addition, kelch repeats have been recognised in alpha- and beta-scruin [, ], and in galactose oxidase from the fungus Dactylium dendroides [, ]. The structure of galactose oxidase reveals that the repeated sequence corresponds to a 4-stranded anti-parallel beta-sheet motif that forms the repeat unit in a super-barrel structural fold []. The known functions of kelch-containing proteins are diverse: scruin is an actin cross-linking protein; galactose oxidase catalyses the oxidation of the hydroxyl group at the C6 position in D-galactose; neuraminidase hydrolyses sialic acid residues from glycoproteins; and kelch may have a cytoskeletal function, as it is localised to the actin-rich ring canals that connect the 15 nurse cells to the developing oocyte in Drosophila []. Nevertheless, based on the location of the kelch pattern in the catalytic unit in galactose oxidase, functionally important residues have been predicted in glyoxal oxidase []. This entry represents a type of kelch sequence motif that comprises one beta-sheet blade.; GO: 0005515 protein binding; PDB: 2XN4_A 2WOZ_A 3II7_A 4ASC_A 1U6D_X 1ZGK_A 2FLU_X 2VPJ_A 2DYH_A 1X2R_A ....

>PF13418 Kelch_4: Galactose oxidase, central domain; PDB: 2UVK_B

Probab=99.01  E-value=6.2e-10  Score=65.40  Aligned_cols=47  Identities=30%  Similarity=0.760  Sum_probs=30.4

Q ss_pred             CccccceEEEecCCCEEEEEcCcccCCCccccccCCceeEEEcCCCcEEEEecC
Q psy14331        101 PRCSHQMVALSADKGQLWMFGGEFSSASESQFHHYKDLWVFRMGEKKWEKIVCK  154 (265)
Q Consensus       101 ~r~~~~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~~~yd~~~~~W~~~~~~  154 (265)
                      ||..|+++.+.  +++|||+||.....     ..++++++||+++++|++++++
T Consensus         1 pR~~h~~~~~~--~~~i~v~GG~~~~~-----~~~~d~~~~d~~~~~W~~~~~~   47 (49)
T PF13418_consen    1 PRYGHSAVSIG--DNSIYVFGGRDSSG-----SPLNDLWIFDIETNTWTRLPSM   47 (49)
T ss_dssp             --BS-EEEEE---TTEEEEE--EEE-T-----EE---EEEEETTTTEEEE--SS
T ss_pred             CcceEEEEEEe--CCeEEEECCCCCCC-----cccCCEEEEECCCCEEEECCCC
Confidence            69999999884  58999999997764     3589999999999999999654

>PF13415 Kelch_3: Galactose oxidase, central domain

Probab=98.99  E-value=1.5e-09  Score=63.72  Aligned_cols=49  Identities=33%  Similarity=0.752  Sum_probs=39.8

Q ss_pred             CCEEEEEcCcccCCCccccccCCceeEEEcCCCcEEEEecCCCCCCCcCceEEEE
Q psy14331        114 KGQLWMFGGEFSSASESQFHHYKDLWVFRMGEKKWEKIVCKDTPPSRSGHRMIAL  168 (265)
Q Consensus       114 ~~~iyv~GG~~~~~~~~~~~~~~~~~~yd~~~~~W~~~~~~~~p~~~~~~~~~~~  168 (265)
                      +++|||+||......    ..++++++||+.+++|+++..  .|.+|.+|+++++
T Consensus         1 g~~~~vfGG~~~~~~----~~~nd~~~~~~~~~~W~~~~~--~P~~R~~h~~~~i   49 (49)
T PF13415_consen    1 GNKLYVFGGYDDDGG----TRLNDVWVFDLDTNTWTRIGD--LPPPRSGHTATVI   49 (49)
T ss_pred             CCEEEEECCcCCCCC----CEecCEEEEECCCCEEEECCC--CCCCccceEEEEC
Confidence            478999999874221    458999999999999999944  4799999999863

>PF13418 Kelch_4: Galactose oxidase, central domain; PDB: 2UVK_B

Probab=98.97  E-value=1.1e-09  Score=64.32  Aligned_cols=46  Identities=33%  Similarity=0.691  Sum_probs=30.8

Q ss_pred             CCcCceEEEE-CCEEEEEcCccCCCCccccCCceEEEEcCCCceEEeccC
Q psy14331        159 SRSGHRMIAL-KKHLVVFGGFHDNLREAKYYNDVHIFDLETYAWKKIEPL  207 (265)
Q Consensus       159 ~~~~~~~~~~-~~~iyv~GG~~~~~~~~~~~~~v~~y~~~~~~W~~~~~~  207 (265)
                      ||.+|+++.+ +++||||||.+...   ..++++++||+.+++|+++.++
T Consensus         1 pR~~h~~~~~~~~~i~v~GG~~~~~---~~~~d~~~~d~~~~~W~~~~~~   47 (49)
T PF13418_consen    1 PRYGHSAVSIGDNSIYVFGGRDSSG---SPLNDLWIFDIETNTWTRLPSM   47 (49)
T ss_dssp             --BS-EEEEE-TTEEEEE--EEE-T---EE---EEEEETTTTEEEE--SS
T ss_pred             CcceEEEEEEeCCeEEEECCCCCCC---cccCCEEEEECCCCEEEECCCC
Confidence            6889999998 58999999997764   4689999999999999999664

>PF07646 Kelch_2: Kelch motif; InterPro: IPR011498 Kelch is a 50-residue motif, named after the Drosophila mutant in which it was first identified []

Probab=98.97  E-value=2.1e-09  Score=63.03  Aligned_cols=48  Identities=29%  Similarity=0.685  Sum_probs=39.0

Q ss_pred             CccccceEEEecCCCEEEEEcCcccCCCccccccCCceeEEEcCCCcEEEEecC
Q psy14331        101 PRCSHQMVALSADKGQLWMFGGEFSSASESQFHHYKDLWVFRMGEKKWEKIVCK  154 (265)
Q Consensus       101 ~r~~~~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~~~yd~~~~~W~~~~~~  154 (265)
                      ||+.|+++++   +++|||+||.......   ...+++++||+++++|+.++++
T Consensus         1 ~r~~hs~~~~---~~kiyv~GG~~~~~~~---~~~~~v~~~d~~t~~W~~~~~~   48 (49)
T PF07646_consen    1 PRYGHSAVVL---DGKIYVFGGYGTDNGG---SSSNDVWVFDTETNQWTELSPM   48 (49)
T ss_pred             CccceEEEEE---CCEEEEECCcccCCCC---cccceeEEEECCCCEEeecCCC
Confidence            6889999988   9999999998111111   3589999999999999999865

This sequence motif represents one beta-sheet blade, and several of these repeats can associate to form a beta-propeller. For instance, the motif appears 6 times in Drosophila egg-chamber regulatory protein, creating a 6-bladed beta-propeller. The motif is also found in mouse protein MIPP [] and in a number of poxviruses. In addition, kelch repeats have been recognised in alpha- and beta-scruin [, ], and in galactose oxidase from the fungus Dactylium dendroides [, ]. The structure of galactose oxidase reveals that the repeated sequence corresponds to a 4-stranded anti-parallel beta-sheet motif that forms the repeat unit in a super-barrel structural fold []. The known functions of kelch-containing proteins are diverse: scruin is an actin cross-linking protein; galactose oxidase catalyses the oxidation of the hydroxyl group at the C6 position in D-galactose; neuraminidase hydrolyses sialic acid residues from glycoproteins; and kelch may have a cytoskeletal function, as it is localised to the actin-rich ring canals that connect the 15 nurse cells to the developing oocyte in Drosophila []. Nevertheless, based on the location of the kelch pattern in the catalytic unit in galactose oxidase, functionally important residues have been predicted in glyoxal oxidase []. This entry represents a type of kelch sequence motif that comprises one beta-sheet blade.; GO: 0005515 protein binding

>PLN02772 guanylate kinase

Probab=98.90  E-value=1.6e-08  Score=84.19  Aligned_cols=87  Identities=13%  Similarity=0.260  Sum_probs=71.3

Q ss_pred             CCCccccceEEEecCCCEEEEEcCcccCCCccccccCCceeEEEcCCCcEEEEecCC-CCCCCcCceEEEE-CCEEEEEc
Q psy14331         99 PPPRCSHQMVALSADKGQLWMFGGEFSSASESQFHHYKDLWVFRMGEKKWEKIVCKD-TPPSRSGHRMIAL-KKHLVVFG  176 (265)
Q Consensus        99 p~~r~~~~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~~~yd~~~~~W~~~~~~~-~p~~~~~~~~~~~-~~~iyv~G  176 (265)
                      +.++..|+++.+   ++++||+||.++..     ...+.+++||+.+.+|......+ .|.+|.+|+++++ +++|+|++
T Consensus        22 ~~~~~~~tav~i---gdk~yv~GG~~d~~-----~~~~~v~i~D~~t~~W~~P~V~G~~P~~r~GhSa~v~~~~rilv~~   93 (398)
T PLN02772         22 VKPKNRETSVTI---GDKTYVIGGNHEGN-----TLSIGVQILDKITNNWVSPIVLGTGPKPCKGYSAVVLNKDRILVIK   93 (398)
T ss_pred             CCCCCcceeEEE---CCEEEEEcccCCCc-----cccceEEEEECCCCcEecccccCCCCCCCCcceEEEECCceEEEEe
Confidence            568899999988   99999999976643     13789999999999999887666 6899999999999 67999999


Q ss_pred             CccCCCCccccCCceEEEEcCCC
Q psy14331        177 GFHDNLREAKYYNDVHIFDLETY  199 (265)
Q Consensus       177 G~~~~~~~~~~~~~v~~y~~~~~  199 (265)
                      +-...      -+++|.+...+.
T Consensus        94 ~~~~~------~~~~w~l~~~t~  110 (398)
T PLN02772         94 KGSAP------DDSIWFLEVDTP  110 (398)
T ss_pred             CCCCC------ccceEEEEcCCH
Confidence            76544      367888877663

>PF13854 Kelch_5: Kelch motif

Probab=98.81  E-value=1.5e-08  Score=57.12  Aligned_cols=41  Identities=29%  Similarity=0.762  Sum_probs=35.0

Q ss_pred             CCCCcCceEEEECCEEEEEcCccCCCCccccCCceEEEEcCCC
Q psy14331        157 PPSRSGHRMIALKKHLVVFGGFHDNLREAKYYNDVHIFDLETY  199 (265)
Q Consensus       157 p~~~~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~v~~y~~~~~  199 (265)
                      |.+|..|++++++++|||+||...  .....++++|+||+.+.
T Consensus         2 P~~R~~hs~~~~~~~iyi~GG~~~--~~~~~~~d~~~l~l~sf   42 (42)
T PF13854_consen    2 PSPRYGHSAVVVGNNIYIFGGYSG--NNNSYSNDLYVLDLPSF   42 (42)
T ss_pred             CCCccceEEEEECCEEEEEcCccC--CCCCEECcEEEEECCCC
Confidence            789999999999999999999985  12256899999998763

>smart00612 Kelch Kelch domain

Probab=98.72  E-value=2e-08  Score=58.20  Aligned_cols=47  Identities=23%  Similarity=0.503  Sum_probs=38.4

Q ss_pred             EEEEEcCcccCCCccccccCCceeEEEcCCCcEEEEecCCCCCCCcCceEEEECC
Q psy14331        116 QLWMFGGEFSSASESQFHHYKDLWVFRMGEKKWEKIVCKDTPPSRSGHRMIALKK  170 (265)
Q Consensus       116 ~iyv~GG~~~~~~~~~~~~~~~~~~yd~~~~~W~~~~~~~~p~~~~~~~~~~~~~  170 (265)
                      +||++||....      ...+++++||+.+++|+.++++  |.+|..|+++++++
T Consensus         1 ~iyv~GG~~~~------~~~~~v~~yd~~~~~W~~~~~~--~~~r~~~~~~~~~g   47 (47)
T smart00612        1 KIYVVGGFDGG------QRLKSVEVYDPETNKWTPLPSM--PTPRSGHGVAVING   47 (47)
T ss_pred             CEEEEeCCCCC------ceeeeEEEECCCCCeEccCCCC--CCccccceEEEeCC
Confidence            48999997542      2378999999999999998876  58999999887754

>PF13854 Kelch_5: Kelch motif

Probab=98.69  E-value=5.2e-08  Score=54.92  Aligned_cols=41  Identities=27%  Similarity=0.552  Sum_probs=34.3

Q ss_pred             CCCCccccceEEEecCCCEEEEEcCccc-CCCccccccCCceeEEEcCCC
Q psy14331         98 APPPRCSHQMVALSADKGQLWMFGGEFS-SASESQFHHYKDLWVFRMGEK  146 (265)
Q Consensus        98 ~p~~r~~~~~~~~~~~~~~iyv~GG~~~-~~~~~~~~~~~~~~~yd~~~~  146 (265)
                      +|.+|..|+++.+   +++||++||... .+     ..++++|+||+.++
T Consensus         1 ~P~~R~~hs~~~~---~~~iyi~GG~~~~~~-----~~~~d~~~l~l~sf   42 (42)
T PF13854_consen    1 IPSPRYGHSAVVV---GNNIYIFGGYSGNNN-----SYSNDLYVLDLPSF   42 (42)
T ss_pred             CCCCccceEEEEE---CCEEEEEcCccCCCC-----CEECcEEEEECCCC
Confidence            4889999999988   899999999874 22     45899999998763

>smart00612 Kelch Kelch domain

Probab=98.61  E-value=7.3e-08  Score=55.80  Aligned_cols=45  Identities=33%  Similarity=0.667  Sum_probs=37.6

Q ss_pred             EEEEEcCccCCCCccccCCceEEEEcCCCceEEeccCCCCCCCCCCceEEEe
Q psy14331        171 HLVVFGGFHDNLREAKYYNDVHIFDLETYAWKKIEPLGAGPAPRSGCQMAAT  222 (265)
Q Consensus       171 ~iyv~GG~~~~~~~~~~~~~v~~y~~~~~~W~~~~~~~~~p~~~~~~~~~~~  222 (265)
                      +||++||....    ...+++++||+.+++|+.+++   +|.+|..++++++
T Consensus         1 ~iyv~GG~~~~----~~~~~v~~yd~~~~~W~~~~~---~~~~r~~~~~~~~   45 (47)
T smart00612        1 KIYVVGGFDGG----QRLKSVEVYDPETNKWTPLPS---MPTPRSGHGVAVI   45 (47)
T ss_pred             CEEEEeCCCCC----ceeeeEEEECCCCCeEccCCC---CCCccccceEEEe
Confidence            48999998652    347899999999999999987   4888998988766

>PF03089 RAG2: Recombination activating protein 2; InterPro: IPR004321 The variable portion of the genes encoding immunoglobulins and T cell receptors are assembled from component V, D, and J DNA segments by a site-specific recombination reaction termed V(D)J recombination

Probab=98.60  E-value=1.6e-05  Score=62.55  Aligned_cols=165  Identities=13%  Similarity=0.143  Sum_probs=95.2

Q ss_pred             EEEEECcEEeCCCceeeCCCcccCceEEEEe---------------eecCCCCCCCccccceEEEecCCCE-EEEEcCcc
Q psy14331         61 QLILFGGEFYDGQKFVFGSPKALDHLILMNL---------------FVSAPGAPPPRCSHQMVALSADKGQ-LWMFGGEF  124 (265)
Q Consensus        61 ~lyv~GG~~~~~~~~~~~~~~~~~~~~~yd~---------------w~~~~~~p~~r~~~~~~~~~~~~~~-iyv~GG~~  124 (265)
                      ..++-||.+.+++.        ++++|....               -.-.++.|.+|++|++-++...++. ..+|||+.
T Consensus        40 ~YlIHGGrTPNNEl--------S~~LY~ls~~s~~cNkK~tl~C~EKeLvGdvP~aRYGHt~~vV~SrGKta~VlFGGRS  111 (337)
T PF03089_consen   40 QYLIHGGRTPNNEL--------SSSLYILSVDSRGCNKKVTLCCQEKELVGDVPEARYGHTINVVHSRGKTACVLFGGRS  111 (337)
T ss_pred             eEEecCCcCCCccc--------ccceEEEEeecCCCCceeEEEEecceecCCCCcccccceEEEEEECCcEEEEEECCcc
Confidence            34455665444443        677888777               2335788999999999888665544 56789973


Q ss_pred             cC--CCcc------ccccCCceeEEEcCCCcEEEEecCCCCCCCcCceEEEECCEEEEEcCccCCCCccccCCceEEEEc
Q psy14331        125 SS--ASES------QFHHYKDLWVFRMGEKKWEKIVCKDTPPSRSGHRMIALKKHLVVFGGFHDNLREAKYYNDVHIFDL  196 (265)
Q Consensus       125 ~~--~~~~------~~~~~~~~~~yd~~~~~W~~~~~~~~p~~~~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~v~~y~~  196 (265)
                      --  ..++      .......++..|++-+..+.-....+-.....|-+.+.++.+|++||..-..+.  --..+++...
T Consensus       112 Y~P~~qRTTenWNsVvDC~P~VfLiDleFGC~tah~lpEl~dG~SFHvslar~D~VYilGGHsl~sd~--Rpp~l~rlkV  189 (337)
T PF03089_consen  112 YMPPGQRTTENWNSVVDCPPQVFLIDLEFGCCTAHTLPELQDGQSFHVSLARNDCVYILGGHSLESDS--RPPRLYRLKV  189 (337)
T ss_pred             cCCccccchhhcceeccCCCeEEEEeccccccccccchhhcCCeEEEEEEecCceEEEEccEEccCCC--CCCcEEEEEE
Confidence            11  1100      112345688888888776654333233566677788889999999998543221  0123444432


Q ss_pred             CC---CceEEeccCCCCCCCCCCce--EEEeCCCeEEEEcCcccccc
Q psy14331        197 ET---YAWKKIEPLGAGPAPRSGCQ--MAATPDGKILISGGYSKQSV  238 (265)
Q Consensus       197 ~~---~~W~~~~~~~~~p~~~~~~~--~~~~~~~~iyi~GG~~~~~~  238 (265)
                      +-   .-...+..   ++.+.+..+  ++.+...+.+|+||+..+..
T Consensus       190 dLllGSP~vsC~v---l~~glSisSAIvt~~~~~e~iIlGGY~sdsQ  233 (337)
T PF03089_consen  190 DLLLGSPAVSCTV---LQGGLSISSAIVTQTGPHEYIILGGYQSDSQ  233 (337)
T ss_pred             eecCCCceeEEEE---CCCCceEeeeeEeecCCCceEEEecccccce
Confidence            21   22333333   222332222  23343467889999976653

V(D)J recombination is targeted to specific sites on the chromosome by recombination signal sequences (RSSs) that flank antigen receptor gene segments. The RSS consists of a conserved heptamer (consensus, 5'-CACAGTG-3') and nonamer (consensus, 5'-ACAAAAACC-3') separated by a spacer of either 12 or 23 bp. Efficient recombination occurs between a 12-RSS and a 23-RSS, a restriction known as the 12/23 rule. V(D)J recombination can be divided into two phases, DNA cleavage and DNA joining. DNA cleavage requires two lymphocyte-specific factors, the products of the recombination activating genes, RAG1 and RAG2, which together recognise the RSSs and create double strand breaks at the RSS-coding segment junctions []. RAG-mediated DNA cleavage occurs in a synaptic complex termed the paired complex, which is constituted from two distinct RSS-RAG complexes, a 12-SC and a 23-SC (where SC stands for signal complex). The DNA cleavage reaction involves two distinct enzymatic steps, initial nicking that creates a 3'-OH between a coding segment and its RSS, followed by hairpin formation in which the newly created 3'-OH attacks a phosphodiester bond on the opposite DNA strand. This generates a blunt, 5' phosphorylated signal end containing all of the RSS elements, and a covalently sealed hairpin coding end. The second phase of V(D)J recombination, in which broken DNA fragments are processed and joined, is less well characterised. Signal ends are typically joined precisely to form a signal joint, whereas joining of the coding ends requires the hairpin structure to be opened and typically involves nucleotide addition and deletion before formation of the coding joint. The factors involved in these processes include ubiquitously expressed proteins involved in the repair of DNA double strand breaks by nonhomologous end joining, terminal deoxynucleotidyl transferase, and Artemis protein. In addition to their critical roles in RSS recognition and DNA cleavage, the RAG proteins may perform two distinct types of functions in the postcleavage phase of V(D)J. A structural function has been inferred from the finding that, after DNA cleavage in vitro, the DNA ends remain associated with the RAG proteins in a "four end" complex known as the cleaved signal complex. After release of the coding ends in vitro, and after coding joint formation in vivo, the RAG proteins remain in a stable signal end complex (SEC) containing the two signal ends. These postcleavage complexes may serve as essential scaffolds for the second phase of the reaction, with the RAG proteins acting to organise the DNA processing and joining events. The second type of RAG protein-mediated postcleavage activity is the catalysis of phosphodiester bond hydrolysis and strand transfer reactions. The RAG proteins are capable of opening hairpin coding ends in vitro. The RAG proteins also show 3' flap endonuclease activity that may contribute to coding end processing/joining and can utilise the 3' OH group on the signal ends to attack hairpin coding ends (forming hybrid or open/shut joints) or virtually any DNA duplex (forming a transposition product).; GO: 0003677 DNA binding, 0006310 DNA recombination, 0005634 nucleus

>PF07250 Glyoxal_oxid_N: Glyoxal oxidase N-terminus; InterPro: IPR009880 This entry represents the N terminus (approximately 300 residues) of a number of plant and fungal glyoxal oxidase enzymes

Probab=98.02  E-value=0.00025  Score=55.93  Aligned_cols=103  Identities=16%  Similarity=0.184  Sum_probs=64.6

Q ss_pred             CCEEEEEcCcccCCCccccccCCceeEEEcCC----CcEEEEecCCCCCCCcCceEEEE-CCEEEEEcCccCCCCccccC
Q psy14331        114 KGQLWMFGGEFSSASESQFHHYKDLWVFRMGE----KKWEKIVCKDTPPSRSGHRMIAL-KKHLVVFGGFHDNLREAKYY  188 (265)
Q Consensus       114 ~~~iyv~GG~~~~~~~~~~~~~~~~~~yd~~~----~~W~~~~~~~~p~~~~~~~~~~~-~~~iyv~GG~~~~~~~~~~~  188 (265)
                      +|++++.||....        ...+-.|++.+    ..|.+.... +-.+|+..++..+ +++++|+||....       
T Consensus        77 dG~ll~tGG~~~G--------~~~ir~~~p~~~~~~~~w~e~~~~-m~~~RWYpT~~~L~DG~vlIvGG~~~~-------  140 (243)
T PF07250_consen   77 DGRLLQTGGDNDG--------NKAIRIFTPCTSDGTCDWTESPND-MQSGRWYPTATTLPDGRVLIVGGSNNP-------  140 (243)
T ss_pred             CCCEEEeCCCCcc--------ccceEEEecCCCCCCCCceECccc-ccCCCccccceECCCCCEEEEeCcCCC-------
Confidence            8999999997542        34566788765    579887542 3488999888888 7899999998522       


Q ss_pred             CceEEEEcCC------CceEEeccCCCCCCCCCCceEEEeCCCeEEEEcCcc
Q psy14331        189 NDVHIFDLET------YAWKKIEPLGAGPAPRSGCQMAATPDGKILISGGYS  234 (265)
Q Consensus       189 ~~v~~y~~~~------~~W~~~~~~~~~p~~~~~~~~~~~~~~~iyi~GG~~  234 (265)
                        .+.|-|..      ..|..+.............-+....+++||+++...
T Consensus       141 --t~E~~P~~~~~~~~~~~~~l~~~~~~~~~nlYP~~~llPdG~lFi~an~~  190 (243)
T PF07250_consen  141 --TYEFWPPKGPGPGPVTLPFLSQTSDTLPNNLYPFVHLLPDGNLFIFANRG  190 (243)
T ss_pred             --cccccCCccCCCCceeeecchhhhccCccccCceEEEcCCCCEEEEEcCC
Confidence              22333331      123323221111112233445567799999998764

Glyoxal oxidase catalyses the oxidation of aldehydes to carboxylic acids, coupled with reduction of dioxygen to hydrogen peroxide. It is an essential component of the extracellular lignin degradation pathways of the wood-rot fungus Phanerochaete chrysosporium [].

>PF03089 RAG2: Recombination activating protein 2; InterPro: IPR004321 The variable portion of the genes encoding immunoglobulins and T cell receptors are assembled from component V, D, and J DNA segments by a site-specific recombination reaction termed V(D)J recombination

Probab=97.87  E-value=0.00068  Score=53.62  Aligned_cols=137  Identities=15%  Similarity=0.181  Sum_probs=77.0

Q ss_pred             eccCCCCCCCceeeEEe-cCC-CEEEEECcEEeCCCce-----eeCCCcccCceEEEEe------eecCCCCCCCccccc
Q psy14331         40 KVVPEPTRRANFSFLAH-PDK-DQLILFGGEFYDGQKF-----VFGSPKALDHLILMNL------FVSAPGAPPPRCSHQ  106 (265)
Q Consensus        40 ~~~~~p~~r~~~~~~~~-~~~-~~lyv~GG~~~~~~~~-----~~~~~~~~~~~~~yd~------w~~~~~~p~~r~~~~  106 (265)
                      +++..|.+|++|++.++ +.+ ..+++|||..+-....     ......+...++.+|+      -..++.+....+.|-
T Consensus        80 LvGdvP~aRYGHt~~vV~SrGKta~VlFGGRSY~P~~qRTTenWNsVvDC~P~VfLiDleFGC~tah~lpEl~dG~SFHv  159 (337)
T PF03089_consen   80 LVGDVPEARYGHTINVVHSRGKTACVLFGGRSYMPPGQRTTENWNSVVDCPPQVFLIDLEFGCCTAHTLPELQDGQSFHV  159 (337)
T ss_pred             ecCCCCcccccceEEEEEECCcEEEEEECCcccCCccccchhhcceeccCCCeEEEEeccccccccccchhhcCCeEEEE
Confidence            35689999999997765 223 3678899963322111     1123345667888888      344555666778888


Q ss_pred             eEEEecCCCEEEEEcCcccCCCccccccCCceeEEEcC--CC-cEEEEecCCCCCCCcCceEEEE-CCEEEEEcCccCCC
Q psy14331        107 MVALSADKGQLWMFGGEFSSASESQFHHYKDLWVFRMG--EK-KWEKIVCKDTPPSRSGHRMIAL-KKHLVVFGGFHDNL  182 (265)
Q Consensus       107 ~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~~~yd~~--~~-~W~~~~~~~~p~~~~~~~~~~~-~~~iyv~GG~~~~~  182 (265)
                      +.+-   ++.+|++||..-...    ..-..+++..++  .+ -.-....+..-.+...+.++.. ....+|+||+..+.
T Consensus       160 slar---~D~VYilGGHsl~sd----~Rpp~l~rlkVdLllGSP~vsC~vl~~glSisSAIvt~~~~~e~iIlGGY~sds  232 (337)
T PF03089_consen  160 SLAR---NDCVYILGGHSLESD----SRPPRLYRLKVDLLLGSPAVSCTVLQGGLSISSAIVTQTGPHEYIILGGYQSDS  232 (337)
T ss_pred             EEec---CceEEEEccEEccCC----CCCCcEEEEEEeecCCCceeEEEECCCCceEeeeeEeecCCCceEEEecccccc
Confidence            7766   899999999743221    123456655432  22 1222222210011222122222 45788899987654


Q ss_pred             C
Q psy14331        183 R  183 (265)
Q Consensus       183 ~  183 (265)
                      +
T Consensus       233 Q  233 (337)
T PF03089_consen  233 Q  233 (337)
T ss_pred             e
Confidence            3

V(D)J recombination is targeted to specific sites on the chromosome by recombination signal sequences (RSSs) that flank antigen receptor gene segments. The RSS consists of a conserved heptamer (consensus, 5'-CACAGTG-3') and nonamer (consensus, 5'-ACAAAAACC-3') separated by a spacer of either 12 or 23 bp. Efficient recombination occurs between a 12-RSS and a 23-RSS, a restriction known as the 12/23 rule. V(D)J recombination can be divided into two phases, DNA cleavage and DNA joining. DNA cleavage requires two lymphocyte-specific factors, the products of the recombination activating genes, RAG1 and RAG2, which together recognise the RSSs and create double strand breaks at the RSS-coding segment junctions []. RAG-mediated DNA cleavage occurs in a synaptic complex termed the paired complex, which is constituted from two distinct RSS-RAG complexes, a 12-SC and a 23-SC (where SC stands for signal complex). The DNA cleavage reaction involves two distinct enzymatic steps, initial nicking that creates a 3'-OH between a coding segment and its RSS, followed by hairpin formation in which the newly created 3'-OH attacks a phosphodiester bond on the opposite DNA strand. This generates a blunt, 5' phosphorylated signal end containing all of the RSS elements, and a covalently sealed hairpin coding end. The second phase of V(D)J recombination, in which broken DNA fragments are processed and joined, is less well characterised. Signal ends are typically joined precisely to form a signal joint, whereas joining of the coding ends requires the hairpin structure to be opened and typically involves nucleotide addition and deletion before formation of the coding joint. The factors involved in these processes include ubiquitously expressed proteins involved in the repair of DNA double strand breaks by nonhomologous end joining, terminal deoxynucleotidyl transferase, and Artemis protein. In addition to their critical roles in RSS recognition and DNA cleavage, the RAG proteins may perform two distinct types of functions in the postcleavage phase of V(D)J. A structural function has been inferred from the finding that, after DNA cleavage in vitro, the DNA ends remain associated with the RAG proteins in a "four end" complex known as the cleaved signal complex. After release of the coding ends in vitro, and after coding joint formation in vivo, the RAG proteins remain in a stable signal end complex (SEC) containing the two signal ends. These postcleavage complexes may serve as essential scaffolds for the second phase of the reaction, with the RAG proteins acting to organise the DNA processing and joining events. The second type of RAG protein-mediated postcleavage activity is the catalysis of phosphodiester bond hydrolysis and strand transfer reactions. The RAG proteins are capable of opening hairpin coding ends in vitro. The RAG proteins also show 3' flap endonuclease activity that may contribute to coding end processing/joining and can utilise the 3' OH group on the signal ends to attack hairpin coding ends (forming hybrid or open/shut joints) or virtually any DNA duplex (forming a transposition product).; GO: 0003677 DNA binding, 0006310 DNA recombination, 0005634 nucleus

>PF07250 Glyoxal_oxid_N: Glyoxal oxidase N-terminus; InterPro: IPR009880 This entry represents the N terminus (approximately 300 residues) of a number of plant and fungal glyoxal oxidase enzymes

Probab=97.77  E-value=0.00014  Score=57.39  Aligned_cols=88  Identities=18%  Similarity=0.227  Sum_probs=67.0

Q ss_pred             eeEEEcCCCcEEEEecCCCCCCCcCceEEE-ECCEEEEEcCccCCCCccccCCceEEEEcCC----CceEEeccCCCCCC
Q psy14331        138 LWVFRMGEKKWEKIVCKDTPPSRSGHRMIA-LKKHLVVFGGFHDNLREAKYYNDVHIFDLET----YAWKKIEPLGAGPA  212 (265)
Q Consensus       138 ~~~yd~~~~~W~~~~~~~~p~~~~~~~~~~-~~~~iyv~GG~~~~~~~~~~~~~v~~y~~~~----~~W~~~~~~~~~p~  212 (265)
                      -..||+.+++++.+...   ...+|.+.+. -++.+++.||....      ...+..|++.+    ..|.+....  +..
T Consensus        48 s~~yD~~tn~~rpl~v~---td~FCSgg~~L~dG~ll~tGG~~~G------~~~ir~~~p~~~~~~~~w~e~~~~--m~~  116 (243)
T PF07250_consen   48 SVEYDPNTNTFRPLTVQ---TDTFCSGGAFLPDGRLLQTGGDNDG------NKAIRIFTPCTSDGTCDWTESPND--MQS  116 (243)
T ss_pred             EEEEecCCCcEEeccCC---CCCcccCcCCCCCCCEEEeCCCCcc------ccceEEEecCCCCCCCCceECccc--ccC
Confidence            55899999999887654   3444444433 38899999998653      35677788765    679887654  578


Q ss_pred             CCCCceEEEeCCCeEEEEcCcccc
Q psy14331        213 PRSGCQMAATPDGKILISGGYSKQ  236 (265)
Q Consensus       213 ~~~~~~~~~~~~~~iyi~GG~~~~  236 (265)
                      +|...++..+.+++++|+||....
T Consensus       117 ~RWYpT~~~L~DG~vlIvGG~~~~  140 (243)
T PF07250_consen  117 GRWYPTATTLPDGRVLIVGGSNNP  140 (243)
T ss_pred             CCccccceECCCCCEEEEeCcCCC
Confidence            899999999999999999998744

Glyoxal oxidase catalyses the oxidation of aldehydes to carboxylic acids, coupled with reduction of dioxygen to hydrogen peroxide. It is an essential component of the extracellular lignin degradation pathways of the wood-rot fungus Phanerochaete chrysosporium [].

>TIGR01640 F_box_assoc_1 F-box protein interaction domain

Probab=97.28  E-value=0.048  Score=43.00  Aligned_cols=109  Identities=17%  Similarity=0.254  Sum_probs=66.0

Q ss_pred             CCceeEEEcCCCcEEEEecCCCCCCCcCceEEEECCEEEEEcCccCCCCccccCCceEEEEcCCCceEE-eccCCCCCCC
Q psy14331        135 YKDLWVFRMGEKKWEKIVCKDTPPSRSGHRMIALKKHLVVFGGFHDNLREAKYYNDVHIFDLETYAWKK-IEPLGAGPAP  213 (265)
Q Consensus       135 ~~~~~~yd~~~~~W~~~~~~~~p~~~~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~v~~y~~~~~~W~~-~~~~~~~p~~  213 (265)
                      ...+++|+..++.|+.+.... +........+.+++.+|-+.-......    ...|..||+.+.+|.. ++.    |..
T Consensus        69 ~~~~~Vys~~~~~Wr~~~~~~-~~~~~~~~~v~~~G~lyw~~~~~~~~~----~~~IvsFDl~~E~f~~~i~~----P~~  139 (230)
T TIGR01640        69 QSEHQVYTLGSNSWRTIECSP-PHHPLKSRGVCINGVLYYLAYTLKTNP----DYFIVSFDVSSERFKEFIPL----PCG  139 (230)
T ss_pred             CccEEEEEeCCCCccccccCC-CCccccCCeEEECCEEEEEEEECCCCC----cEEEEEEEcccceEeeeeec----Ccc
Confidence            356889999999999987432 121222236677999988874322110    1269999999999995 544    322


Q ss_pred             CC----CceEEEeCCCeEEEEcCccccccccccccceeeceEEEEe-cCcccccc
Q psy14331        214 RS----GCQMAATPDGKILISGGYSKQSVKKDVDKGIVHTDTFLLT-PDSKTLRS  263 (265)
Q Consensus       214 ~~----~~~~~~~~~~~iyi~GG~~~~~~~~~~~~~~~~~~~w~~~-~~~~~w~~  263 (265)
                      ..    ...++.+ +++|.++.......          .=++|.++ .....|.+
T Consensus       140 ~~~~~~~~~L~~~-~G~L~~v~~~~~~~----------~~~IWvl~d~~~~~W~k  183 (230)
T TIGR01640       140 NSDSVDYLSLINY-KGKLAVLKQKKDTN----------NFDLWVLNDAGKQEWSK  183 (230)
T ss_pred             ccccccceEEEEE-CCEEEEEEecCCCC----------cEEEEEECCCCCCceeE
Confidence            21    2344444 68888765432111          12588886 33556765

This model describes a large family of plant domains, with several hundred members in Arabidopsis thaliana. Most examples are found C-terminal to an F-box (pfam00646), a 60 amino acid motif involved in ubiquitination of target proteins to mark them for degradation. Two-hybid experiments support the idea that most members are interchangeable F-box subunits of SCF E3 complexes. Some members have two copies of this domain.

>TIGR01640 F_box_assoc_1 F-box protein interaction domain

Probab=96.98  E-value=0.12  Score=40.68  Aligned_cols=180  Identities=15%  Similarity=0.231  Sum_probs=96.0

Q ss_pred             HHHHhhcccceEEEeccCCCCCC---Cc--eeeEEec--CCCEEEEECcEEeCCCceeeCCCcccCceEEEEe----eec
Q psy14331         26 DIEAEEKRKNKVIEKVVPEPTRR---AN--FSFLAHP--DKDQLILFGGEFYDGQKFVFGSPKALDHLILMNL----FVS   94 (265)
Q Consensus        26 ~~~~~d~~~~~w~~~~~~~p~~r---~~--~~~~~~~--~~~~lyv~GG~~~~~~~~~~~~~~~~~~~~~yd~----w~~   94 (265)
                      .+..+||.+++|.. +++++.++   ..  .++...+  ..=++..+...  .....       ...+.+|+.    |..
T Consensus        15 ~~~V~NP~T~~~~~-LP~~~~~~~~~~~~~~~~G~d~~~~~YKVv~~~~~--~~~~~-------~~~~~Vys~~~~~Wr~   84 (230)
T TIGR01640        15 RLVVWNPSTGQSRW-LPTPKSRRSNKESDTYFLGYDPIEKQYKVLCFSDR--SGNRN-------QSEHQVYTLGSNSWRT   84 (230)
T ss_pred             cEEEECCCCCCEEe-cCCCCCcccccccceEEEeecccCCcEEEEEEEee--cCCCC-------CccEEEEEeCCCCccc
Confidence            57789999999988 44333221   11  1122211  12244444331  11110       356788888    887


Q ss_pred             CCCCCCC-ccccceEEEecCCCEEEEEcCcccCCCccccccCCceeEEEcCCCcEEE-EecCCCCCCC----cCceEEEE
Q psy14331         95 APGAPPP-RCSHQMVALSADKGQLWMFGGEFSSASESQFHHYKDLWVFRMGEKKWEK-IVCKDTPPSR----SGHRMIAL  168 (265)
Q Consensus        95 ~~~~p~~-r~~~~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~~~yd~~~~~W~~-~~~~~~p~~~----~~~~~~~~  168 (265)
                      ....+.. ......+.+   +|.||-+.-......      ...+..||+.+.+|+. ++.   |...    ....++..
T Consensus        85 ~~~~~~~~~~~~~~v~~---~G~lyw~~~~~~~~~------~~~IvsFDl~~E~f~~~i~~---P~~~~~~~~~~~L~~~  152 (230)
T TIGR01640        85 IECSPPHHPLKSRGVCI---NGVLYYLAYTLKTNP------DYFIVSFDVSSERFKEFIPL---PCGNSDSVDYLSLINY  152 (230)
T ss_pred             cccCCCCccccCCeEEE---CCEEEEEEEECCCCC------cEEEEEEEcccceEeeeeec---CccccccccceEEEEE
Confidence            7643322 222225555   899988864322110      1269999999999995 543   2222    13345666


Q ss_pred             CCEEEEEcCccCCCCccccCCceEEEE-cCCCceEEeccCCCCCCCCCC---ceEEEeCCCeEEEEcC
Q psy14331        169 KKHLVVFGGFHDNLREAKYYNDVHIFD-LETYAWKKIEPLGAGPAPRSG---CQMAATPDGKILISGG  232 (265)
Q Consensus       169 ~~~iyv~GG~~~~~~~~~~~~~v~~y~-~~~~~W~~~~~~~~~p~~~~~---~~~~~~~~~~iyi~GG  232 (265)
                      ++++.++.......     .-+||..+ -....|++.-..+..+.....   .......+++|++...
T Consensus       153 ~G~L~~v~~~~~~~-----~~~IWvl~d~~~~~W~k~~~i~~~~~~~~~~~~~~~~~~~~g~I~~~~~  215 (230)
T TIGR01640       153 KGKLAVLKQKKDTN-----NFDLWVLNDAGKQEWSKLFTVPIPPLPDLVDDNFLSGFTDKGEIVLCCE  215 (230)
T ss_pred             CCEEEEEEecCCCC-----cEEEEEECCCCCCceeEEEEEcCcchhhhhhheeEeEEeeCCEEEEEeC
Confidence            88888776532211     24677775 335679987665321222221   1233455778887654

This model describes a large family of plant domains, with several hundred members in Arabidopsis thaliana. Most examples are found C-terminal to an F-box (pfam00646), a 60 amino acid motif involved in ubiquitination of target proteins to mark them for degradation. Two-hybid experiments support the idea that most members are interchangeable F-box subunits of SCF E3 complexes. Some members have two copies of this domain.

>PF07893 DUF1668: Protein of unknown function (DUF1668); InterPro: IPR012871 The hypothetical proteins found in this family are expressed by Oryza sativa (Rice) and are of unknown function

Probab=96.75  E-value=0.089  Score=44.26  Aligned_cols=120  Identities=10%  Similarity=0.155  Sum_probs=69.8

Q ss_pred             CCCEEEEEcCcccCCCccccccCCceeEEEcCCCcEEEEecCCCCCCCcCceEEEECCEEEEEcCccCCCCcccc-CCce
Q psy14331        113 DKGQLWMFGGEFSSASESQFHHYKDLWVFRMGEKKWEKIVCKDTPPSRSGHRMIALKKHLVVFGGFHDNLREAKY-YNDV  191 (265)
Q Consensus       113 ~~~~iyv~GG~~~~~~~~~~~~~~~~~~yd~~~~~W~~~~~~~~p~~~~~~~~~~~~~~iyv~GG~~~~~~~~~~-~~~v  191 (265)
                      .+++|+..+..            ..+.+||+++..-...+.+.  .+.....++.++++||++............ ...+
T Consensus        75 ~gskIv~~d~~------------~~t~vyDt~t~av~~~P~l~--~pk~~pisv~VG~~LY~m~~~~~~~~~~~~~~~~F  140 (342)
T PF07893_consen   75 HGSKIVAVDQS------------GRTLVYDTDTRAVATGPRLH--SPKRCPISVSVGDKLYAMDRSPFPEPAGRPDFPCF  140 (342)
T ss_pred             cCCeEEEEcCC------------CCeEEEECCCCeEeccCCCC--CCCcceEEEEeCCeEEEeeccCccccccCccceeE
Confidence            38888888653            44889999998877665543  444455677778999999876433211000 0033


Q ss_pred             EE--EEc------CC--CceEEeccCCCCCCCCCC-------ceEEEeCCCeEEE-EcCccccccccccccceeeceEEE
Q psy14331        192 HI--FDL------ET--YAWKKIEPLGAGPAPRSG-------CQMAATPDGKILI-SGGYSKQSVKKDVDKGIVHTDTFL  253 (265)
Q Consensus       192 ~~--y~~------~~--~~W~~~~~~~~~p~~~~~-------~~~~~~~~~~iyi-~GG~~~~~~~~~~~~~~~~~~~w~  253 (265)
                      +.  |++      ..  =.|+.+++   +|..+..       .+-+++.+..|+| +-|..              ...|.
T Consensus       141 E~l~~~~~~~~~~~~~~w~W~~LP~---PPf~~~~~~~~~~i~sYavv~g~~I~vS~~~~~--------------~GTys  203 (342)
T PF07893_consen  141 EALVYRPPPDDPSPEESWSWRSLPP---PPFVRDRRYSDYRITSYAVVDGRTIFVSVNGRR--------------WGTYS  203 (342)
T ss_pred             EEeccccccccccCCCcceEEcCCC---CCccccCCcccceEEEEEEecCCeEEEEecCCc--------------eEEEE
Confidence            33  342      12  25777665   2333321       2223333446777 32221              24899


Q ss_pred             EecCcccccc
Q psy14331        254 LTPDSKTLRS  263 (265)
Q Consensus       254 ~~~~~~~w~~  263 (265)
                      ||+...+|++
T Consensus       204 fDt~~~~W~~  213 (342)
T PF07893_consen  204 FDTESHEWRK  213 (342)
T ss_pred             EEcCCcceee
Confidence            9999999986

>PF07893 DUF1668: Protein of unknown function (DUF1668); InterPro: IPR012871 The hypothetical proteins found in this family are expressed by Oryza sativa (Rice) and are of unknown function

Probab=96.38  E-value=0.45  Score=40.07  Aligned_cols=119  Identities=13%  Similarity=0.232  Sum_probs=69.3

Q ss_pred             CCCEEEEECcEEeCCCceeeCCCcccCceEEEEe----eecCCCCCCCccccceEEEecCCCEEEEEcCcccCCCccccc
Q psy14331         58 DKDQLILFGGEFYDGQKFVFGSPKALDHLILMNL----FVSAPGAPPPRCSHQMVALSADKGQLWMFGGEFSSASESQFH  133 (265)
Q Consensus        58 ~~~~lyv~GG~~~~~~~~~~~~~~~~~~~~~yd~----w~~~~~~p~~r~~~~~~~~~~~~~~iyv~GG~~~~~~~~~~~  133 (265)
                      .+.+|+..+.               ......||.    -...+.++.+...-.++.+   +++||++........... .
T Consensus        75 ~gskIv~~d~---------------~~~t~vyDt~t~av~~~P~l~~pk~~pisv~V---G~~LY~m~~~~~~~~~~~-~  135 (342)
T PF07893_consen   75 HGSKIVAVDQ---------------SGRTLVYDTDTRAVATGPRLHSPKRCPISVSV---GDKLYAMDRSPFPEPAGR-P  135 (342)
T ss_pred             cCCeEEEEcC---------------CCCeEEEECCCCeEeccCCCCCCCcceEEEEe---CCeEEEeeccCccccccC-c
Confidence            4888888876               345789999    4455566665555555555   778999987643322100 0


Q ss_pred             cCCceeEE--Ec--------CCCcEEEEecCCCCCCCcC-------ceEEEE-CCEEEE-EcCccCCCCccccCCceEEE
Q psy14331        134 HYKDLWVF--RM--------GEKKWEKIVCKDTPPSRSG-------HRMIAL-KKHLVV-FGGFHDNLREAKYYNDVHIF  194 (265)
Q Consensus       134 ~~~~~~~y--d~--------~~~~W~~~~~~~~p~~~~~-------~~~~~~-~~~iyv-~GG~~~~~~~~~~~~~v~~y  194 (265)
                      ....++.+  +.        ..-.|+.+++.  |..+..       .+-+++ +..|+| .-+..         ...+.|
T Consensus       136 ~~~~FE~l~~~~~~~~~~~~~~w~W~~LP~P--Pf~~~~~~~~~~i~sYavv~g~~I~vS~~~~~---------~GTysf  204 (342)
T PF07893_consen  136 DFPCFEALVYRPPPDDPSPEESWSWRSLPPP--PFVRDRRYSDYRITSYAVVDGRTIFVSVNGRR---------WGTYSF  204 (342)
T ss_pred             cceeEEEeccccccccccCCCcceEEcCCCC--CccccCCcccceEEEEEEecCCeEEEEecCCc---------eEEEEE
Confidence            00144444  31        12367777653  222221       233444 667777 33321         247899


Q ss_pred             EcCCCceEEecc
Q psy14331        195 DLETYAWKKIEP  206 (265)
Q Consensus       195 ~~~~~~W~~~~~  206 (265)
                      |+.+.+|++...
T Consensus       205 Dt~~~~W~~~Gd  216 (342)
T PF07893_consen  205 DTESHEWRKHGD  216 (342)
T ss_pred             EcCCcceeeccc
Confidence            999999999965

>PF12768 Rax2: Cortical protein marker for cell polarity

Probab=96.33  E-value=0.072  Score=43.30  Aligned_cols=106  Identities=17%  Similarity=0.297  Sum_probs=62.0

Q ss_pred             EEcCcccCCCccccccCCceeEEEcCCCcEEEEecCCCCCCCcCceEEEE-CCEEEEEcCccCCCCccccCCceEEEEcC
Q psy14331        119 MFGGEFSSASESQFHHYKDLWVFRMGEKKWEKIVCKDTPPSRSGHRMIAL-KKHLVVFGGFHDNLREAKYYNDVHIFDLE  197 (265)
Q Consensus       119 v~GG~~~~~~~~~~~~~~~~~~yd~~~~~W~~~~~~~~p~~~~~~~~~~~-~~~iyv~GG~~~~~~~~~~~~~v~~y~~~  197 (265)
                      ++||..+....   .....+-.||+.+.+|..+...   ..-.-..+... ++++|+.|-....+   .....+..||..
T Consensus         2 ~VGG~F~~aGs---L~C~~lC~yd~~~~qW~~~g~~---i~G~V~~l~~~~~~~Llv~G~ft~~~---~~~~~la~yd~~   72 (281)
T PF12768_consen    2 YVGGSFTSAGS---LPCPGLCLYDTDNSQWSSPGNG---ISGTVTDLQWASNNQLLVGGNFTLNG---TNSSNLATYDFK   72 (281)
T ss_pred             EEeeecCCCCC---cCCCEEEEEECCCCEeecCCCC---ceEEEEEEEEecCCEEEEEEeeEECC---CCceeEEEEecC
Confidence            45665443322   1257788999999999987543   11112233333 67888877553332   114568899999


Q ss_pred             CCceEEeccC--CCCCCCCCCceEEEeCCCeEEEEcCc
Q psy14331        198 TYAWKKIEPL--GAGPAPRSGCQMAATPDGKILISGGY  233 (265)
Q Consensus       198 ~~~W~~~~~~--~~~p~~~~~~~~~~~~~~~iyi~GG~  233 (265)
                      +.+|..+...  ..+|.+............++++.|..
T Consensus        73 ~~~w~~~~~~~s~~ipgpv~a~~~~~~d~~~~~~aG~~  110 (281)
T PF12768_consen   73 NQTWSSLGGGSSNSIPGPVTALTFISNDGSNFWVAGRS  110 (281)
T ss_pred             CCeeeecCCcccccCCCcEEEEEeeccCCceEEEecee
Confidence            9999988873  23454432222222223467777765

>KOG2055|consensus

Probab=95.88  E-value=0.38  Score=41.05  Aligned_cols=145  Identities=14%  Similarity=0.167  Sum_probs=75.6

Q ss_pred             eEEecCCCEEEEECcEEeCCCceeeCCCcccCceEEEEe--eecCCCCCCCccccceEEEecCCCEEEEEcCcccCCCcc
Q psy14331         53 FLAHPDKDQLILFGGEFYDGQKFVFGSPKALDHLILMNL--FVSAPGAPPPRCSHQMVALSADKGQLWMFGGEFSSASES  130 (265)
Q Consensus        53 ~~~~~~~~~lyv~GG~~~~~~~~~~~~~~~~~~~~~yd~--w~~~~~~p~~r~~~~~~~~~~~~~~iyv~GG~~~~~~~~  130 (265)
                      +-+. -...+.+.+|.  ++.          -.++..|-  -..+.++-..++.-..+.....+....+.+|+       
T Consensus       219 v~FH-p~~plllvaG~--d~~----------lrifqvDGk~N~~lqS~~l~~fPi~~a~f~p~G~~~i~~s~r-------  278 (514)
T KOG2055|consen  219 VQFH-PTAPLLLVAGL--DGT----------LRIFQVDGKVNPKLQSIHLEKFPIQKAEFAPNGHSVIFTSGR-------  278 (514)
T ss_pred             EEec-CCCceEEEecC--CCc----------EEEEEecCccChhheeeeeccCccceeeecCCCceEEEeccc-------
Confidence            3344 35678888883  322          13333333  22333443334433333343334436666665       


Q ss_pred             ccccCCceeEEEcCCCcEEEEecCC-CCCCCcCceEEEECCEEEEEcCccCCCCccccCCceEEEEcCCCceEEeccCCC
Q psy14331        131 QFHHYKDLWVFRMGEKKWEKIVCKD-TPPSRSGHRMIALKKHLVVFGGFHDNLREAKYYNDVHIFDLETYAWKKIEPLGA  209 (265)
Q Consensus       131 ~~~~~~~~~~yd~~~~~W~~~~~~~-~p~~~~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~v~~y~~~~~~W~~~~~~~~  209 (265)
                          ..-++.||+++.+-+++.++. .+.+....-.+...+.++++-|..         ..|+..+..++.|..--.+  
T Consensus       279 ----rky~ysyDle~ak~~k~~~~~g~e~~~~e~FeVShd~~fia~~G~~---------G~I~lLhakT~eli~s~Ki--  343 (514)
T KOG2055|consen  279 ----RKYLYSYDLETAKVTKLKPPYGVEEKSMERFEVSHDSNFIAIAGNN---------GHIHLLHAKTKELITSFKI--  343 (514)
T ss_pred             ----ceEEEEeeccccccccccCCCCcccchhheeEecCCCCeEEEcccC---------ceEEeehhhhhhhhheeee--
Confidence                345889999999988887665 222221212233345566666653         4577888888888644332  


Q ss_pred             CCCCCCCceEEEeCCCeEEEEcCcc
Q psy14331        210 GPAPRSGCQMAATPDGKILISGGYS  234 (265)
Q Consensus       210 ~p~~~~~~~~~~~~~~~iyi~GG~~  234 (265)
                       +......+ ..-.+..|+++||.+
T Consensus       344 -eG~v~~~~-fsSdsk~l~~~~~~G  366 (514)
T KOG2055|consen  344 -EGVVSDFT-FSSDSKELLASGGTG  366 (514)
T ss_pred             -ccEEeeEE-EecCCcEEEEEcCCc
Confidence             22222222 222233577777764

>PRK11138 outer membrane biogenesis protein BamB; Provisional

Probab=95.38  E-value=1.6  Score=37.55  Aligned_cols=104  Identities=9%  Similarity=0.129  Sum_probs=61.0

Q ss_pred             CCCEEEEECcEEeCCCceeeCCCcccCceEEEEe------eecCCCCC--------CCccccceEEEecCCCEEEEEcCc
Q psy14331         58 DKDQLILFGGEFYDGQKFVFGSPKALDHLILMNL------FVSAPGAP--------PPRCSHQMVALSADKGQLWMFGGE  123 (265)
Q Consensus        58 ~~~~lyv~GG~~~~~~~~~~~~~~~~~~~~~yd~------w~~~~~~p--------~~r~~~~~~~~~~~~~~iyv~GG~  123 (265)
                      .++++|+...               ...++++|.      |...-.-.        ..+.... ..+.  ++++|+.+. 
T Consensus        68 ~~~~vy~~~~---------------~g~l~ald~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~-~~v~--~~~v~v~~~-  128 (394)
T PRK11138         68 AYNKVYAADR---------------AGLVKALDADTGKEIWSVDLSEKDGWFSKNKSALLSGG-VTVA--GGKVYIGSE-  128 (394)
T ss_pred             ECCEEEEECC---------------CCeEEEEECCCCcEeeEEcCCCcccccccccccccccc-cEEE--CCEEEEEcC-
Confidence            4899999876               356778887      66432211        0111122 2232  788887543 


Q ss_pred             ccCCCccccccCCceeEEEcCCC--cEEEEecCCCCCCCcCceEEEECCEEEEEcCccCCCCccccCCceEEEEcCCCc-
Q psy14331        124 FSSASESQFHHYKDLWVFRMGEK--KWEKIVCKDTPPSRSGHRMIALKKHLVVFGGFHDNLREAKYYNDVHIFDLETYA-  200 (265)
Q Consensus       124 ~~~~~~~~~~~~~~~~~yd~~~~--~W~~~~~~~~p~~~~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~v~~y~~~~~~-  200 (265)
                                 ...++.+|.+++  .|+.-...   ..  ..+.++.++.+|+..+          ...++.+|+.+.+ 
T Consensus       129 -----------~g~l~ald~~tG~~~W~~~~~~---~~--~ssP~v~~~~v~v~~~----------~g~l~ald~~tG~~  182 (394)
T PRK11138        129 -----------KGQVYALNAEDGEVAWQTKVAG---EA--LSRPVVSDGLVLVHTS----------NGMLQALNESDGAV  182 (394)
T ss_pred             -----------CCEEEEEECCCCCCcccccCCC---ce--ecCCEEECCEEEEECC----------CCEEEEEEccCCCE
Confidence                       246899998876  58654221   11  1233445788887433          2468999998754 


Q ss_pred             -eEEecc
Q psy14331        201 -WKKIEP  206 (265)
Q Consensus       201 -W~~~~~  206 (265)
                       |+.-..
T Consensus       183 ~W~~~~~  189 (394)
T PRK11138        183 KWTVNLD  189 (394)
T ss_pred             eeeecCC
Confidence             876543

>PRK11138 outer membrane biogenesis protein BamB; Provisional

Probab=95.36  E-value=1.6  Score=37.50  Aligned_cols=133  Identities=10%  Similarity=0.049  Sum_probs=71.5

Q ss_pred             HHHHhhcccce--EEEeccCCC-------CCCCceeeEEecCCCEEEEECcEEeCCCceeeCCCcccCceEEEEe-----
Q psy14331         26 DIEAEEKRKNK--VIEKVVPEP-------TRRANFSFLAHPDKDQLILFGGEFYDGQKFVFGSPKALDHLILMNL-----   91 (265)
Q Consensus        26 ~~~~~d~~~~~--w~~~~~~~p-------~~r~~~~~~~~~~~~~lyv~GG~~~~~~~~~~~~~~~~~~~~~yd~-----   91 (265)
                      .+.++|..+.+  |+.......       ..+...+.++  .++++|+.+.               ...++++|.     
T Consensus        80 ~l~ald~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~v--~~~~v~v~~~---------------~g~l~ald~~tG~~  142 (394)
T PRK11138         80 LVKALDADTGKEIWSVDLSEKDGWFSKNKSALLSGGVTV--AGGKVYIGSE---------------KGQVYALNAEDGEV  142 (394)
T ss_pred             eEEEEECCCCcEeeEEcCCCcccccccccccccccccEE--ECCEEEEEcC---------------CCEEEEEECCCCCC
Confidence            36788876444  865332210       1122223344  4888887544               357888887     


Q ss_pred             -eecCCCCCCCccccceEEEecCCCEEEEEcCcccCCCccccccCCceeEEEcCCCc--EEEEecCCCCCCCcCceEEEE
Q psy14331         92 -FVSAPGAPPPRCSHQMVALSADKGQLWMFGGEFSSASESQFHHYKDLWVFRMGEKK--WEKIVCKDTPPSRSGHRMIAL  168 (265)
Q Consensus        92 -w~~~~~~p~~r~~~~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~~~yd~~~~~--W~~~~~~~~p~~~~~~~~~~~  168 (265)
                       |....+  .+. ..+-++.   ++.+|+..+            ...++.+|+++++  |+.-...+....+...+-++.
T Consensus       143 ~W~~~~~--~~~-~ssP~v~---~~~v~v~~~------------~g~l~ald~~tG~~~W~~~~~~~~~~~~~~~sP~v~  204 (394)
T PRK11138        143 AWQTKVA--GEA-LSRPVVS---DGLVLVHTS------------NGMLQALNESDGAVKWTVNLDVPSLTLRGESAPATA  204 (394)
T ss_pred             cccccCC--Cce-ecCCEEE---CCEEEEECC------------CCEEEEEEccCCCEeeeecCCCCcccccCCCCCEEE
Confidence             765432  221 1222333   788887543            2458999998875  776432110011112233445


Q ss_pred             CCEEEEEcCccCCCCccccCCceEEEEcCCC--ceEE
Q psy14331        169 KKHLVVFGGFHDNLREAKYYNDVHIFDLETY--AWKK  203 (265)
Q Consensus       169 ~~~iyv~GG~~~~~~~~~~~~~v~~y~~~~~--~W~~  203 (265)
                      ++.+|+..+          ...++.+|+.+.  .|+.
T Consensus       205 ~~~v~~~~~----------~g~v~a~d~~~G~~~W~~  231 (394)
T PRK11138        205 FGGAIVGGD----------NGRVSAVLMEQGQLIWQQ  231 (394)
T ss_pred             CCEEEEEcC----------CCEEEEEEccCChhhhee
Confidence            677766433          245788888875  4875

>cd00094 HX Hemopexin-like repeats

Probab=95.13  E-value=1.1  Score=34.35  Aligned_cols=93  Identities=18%  Similarity=0.224  Sum_probs=48.1

Q ss_pred             CCEEEEEcCcccCCCccccccCCceeEEEcCCCcEE---EEecCCCCC--CCcCceEEEE--CCEEEEEcCccCCCCccc
Q psy14331        114 KGQLWMFGGEFSSASESQFHHYKDLWVFRMGEKKWE---KIVCKDTPP--SRSGHRMIAL--KKHLVVFGGFHDNLREAK  186 (265)
Q Consensus       114 ~~~iyv~GG~~~~~~~~~~~~~~~~~~yd~~~~~W~---~~~~~~~p~--~~~~~~~~~~--~~~iyv~GG~~~~~~~~~  186 (265)
                      ++++|++-|.             ..|+|+..+....   .+.....|.  .... ++...  ++++|+|-|         
T Consensus        62 ~~~~yfFkg~-------------~yw~~~~~~~~~~~Pk~i~~~~~~~~~~~iD-AA~~~~~~~~~yfFkg---------  118 (194)
T cd00094          62 TGKIYFFKGD-------------KYWVYTGKNLEPGYPKPISDLGFPPTVKQID-AALRWPDNGKTYFFKG---------  118 (194)
T ss_pred             CCEEEEECCC-------------EEEEEcCcccccCCCcchhhcCCCCCCCCcc-EEEEEcCCCEEEEEeC---------
Confidence            4899999773             4777876542221   111111121  2222 33334  579999987         


Q ss_pred             cCCceEEEEcCCCceEEe-----ccC-CCCCCCCCCceEEEeCCCeEEEEcCc
Q psy14331        187 YYNDVHIFDLETYAWKKI-----EPL-GAGPAPRSGCQMAATPDGKILISGGY  233 (265)
Q Consensus       187 ~~~~v~~y~~~~~~W~~~-----~~~-~~~p~~~~~~~~~~~~~~~iyi~GG~  233 (265)
                        +..|+||..+++.+.-     ... ..+|..  -.++....++++|++-|.
T Consensus       119 --~~y~ry~~~~~~v~~~yP~~i~~~w~g~p~~--idaa~~~~~~~~yfF~g~  167 (194)
T cd00094         119 --DKYWRYDEKTQKMDPGYPKLIETDFPGVPDK--VDAAFRWLDGYYYFFKGD  167 (194)
T ss_pred             --CEEEEEeCCCccccCCCCcchhhcCCCcCCC--cceeEEeCCCcEEEEECC
Confidence              4578888766544211     110 112221  233444545889998765

; Hemopexin is a heme-binding protein that transports heme to the liver. Hemopexin-like repeats occur in vitronectin and some matrix metalloproteinases family (matrixins). The HX repeats of some matrixins bind tissue inhibitor of metalloproteinases (TIMPs). This CD contains 4 instances of the repeat.

>PF12217 End_beta_propel: Catalytic beta propeller domain of bacteriophage endosialidase; InterPro: IPR024428 This entry represents the beta propeller domain of endosialidases, which consists of catalytically active part of the enzymes

Probab=94.25  E-value=2.3  Score=33.95  Aligned_cols=114  Identities=16%  Similarity=0.198  Sum_probs=52.9

Q ss_pred             CCEEEEEcCcccCCCccccccCCceeEEEcCCCcEEEEecCCCCCCCcC--ceEEEECCEEEEEcCccCCCCcc------
Q psy14331        114 KGQLWMFGGEFSSASESQFHHYKDLWVFRMGEKKWEKIVCKDTPPSRSG--HRMIALKKHLVVFGGFHDNLREA------  185 (265)
Q Consensus       114 ~~~iyv~GG~~~~~~~~~~~~~~~~~~yd~~~~~W~~~~~~~~p~~~~~--~~~~~~~~~iyv~GG~~~~~~~~------  185 (265)
                      +++||+.-..+...     .+-+.+.+-+.....|+.+...   ...++  .-.+.+++.||+||-....+++.      
T Consensus       200 ~g~LyLtTRgt~~~-----~~GS~L~rs~d~G~~w~slrfp---~nvHhtnlPFakvgD~l~mFgsERA~~EWE~G~~D~  271 (367)
T PF12217_consen  200 DGVLYLTTRGTLPT-----NPGSSLHRSDDNGQNWSSLRFP---NNVHHTNLPFAKVGDVLYMFGSERAENEWEGGEPDN  271 (367)
T ss_dssp             TTEEEEEEEES-TT-----S---EEEEESSTTSS-EEEE-T---T---SS---EEEETTEEEEEEE-SSTT-SSTT----
T ss_pred             CCEEEEEEcCcCCC-----CCcceeeeecccCCchhhcccc---ccccccCCCceeeCCEEEEEeccccccccccCCCcc
Confidence            89999986433221     1235566777777889998754   33322  23466799999999653322211      


Q ss_pred             --------ccCCce--EEEEcCCCceEEeccC---CCCCCCCCCceEEEeCCCeEE-EEcCccc
Q psy14331        186 --------KYYNDV--HIFDLETYAWKKIEPL---GAGPAPRSGCQMAATPDGKIL-ISGGYSK  235 (265)
Q Consensus       186 --------~~~~~v--~~y~~~~~~W~~~~~~---~~~p~~~~~~~~~~~~~~~iy-i~GG~~~  235 (265)
                              +++..+  -..+++.-.|..+...   +..-..-.+-+.+++.++.|| ||||.+.
T Consensus       272 RY~~~yPRtF~~k~nv~~W~~d~~ew~nitdqIYqG~ivNSavGVGSv~~KD~~lyy~FGgED~  335 (367)
T PF12217_consen  272 RYRANYPRTFMLKVNVSDWSLDDVEWVNITDQIYQGGIVNSAVGVGSVVVKDGWLYYIFGGEDF  335 (367)
T ss_dssp             -SS-B--EEEEEEEETTT---TT---EEEEE-BB--SSS---SEEEEEEEETTEEEEEEEEB-S
T ss_pred             cccccCCceEEEEeecccCCccceEEEEeecceeccccccccccceeEEEECCEEEEEecCccc
Confidence                    111111  1135666778777652   111112223344566688765 8999763

This core domain forms stable SDS-resistant trimers. There is a nested beta barrel domain in this domain. This domain is typically between 443 and 460 amino acids in length [].; PDB: 1V0E_B 1V0F_E 3JU4_A 3GVL_A 3GVK_B 3GVJ_A.

>KOG2055|consensus

Probab=94.22  E-value=1.3  Score=37.94  Aligned_cols=137  Identities=14%  Similarity=0.167  Sum_probs=71.8

Q ss_pred             eEEecCCCEEEEECcEEeCCCceeeCCCcccCceEEEEe----eecCCCC--CCCccccceEEEecCCCEEEEEcCcccC
Q psy14331         53 FLAHPDKDQLILFGGEFYDGQKFVFGSPKALDHLILMNL----FVSAPGA--PPPRCSHQMVALSADKGQLWMFGGEFSS  126 (265)
Q Consensus        53 ~~~~~~~~~lyv~GG~~~~~~~~~~~~~~~~~~~~~yd~----w~~~~~~--p~~r~~~~~~~~~~~~~~iyv~GG~~~~  126 (265)
                      +++.|.|...++++|.              ..-++.||+    -+++.++  ...+..+.-- +.. ++.++++-|.   
T Consensus       263 a~f~p~G~~~i~~s~r--------------rky~ysyDle~ak~~k~~~~~g~e~~~~e~Fe-VSh-d~~fia~~G~---  323 (514)
T KOG2055|consen  263 AEFAPNGHSVIFTSGR--------------RKYLYSYDLETAKVTKLKPPYGVEEKSMERFE-VSH-DSNFIAIAGN---  323 (514)
T ss_pred             eeecCCCceEEEeccc--------------ceEEEEeeccccccccccCCCCcccchhheeE-ecC-CCCeEEEccc---
Confidence            4444456657777773              456888999    3333221  1122222221 211 4455566564   


Q ss_pred             CCccccccCCceeEEEcCCCcEEEEecCCCCCCCcCceEEEECCEEEEEcCccCCCCccccCCceEEEEcCCCceEEecc
Q psy14331        127 ASESQFHHYKDLWVFRMGEKKWEKIVCKDTPPSRSGHRMIALKKHLVVFGGFHDNLREAKYYNDVHIFDLETYAWKKIEP  206 (265)
Q Consensus       127 ~~~~~~~~~~~~~~yd~~~~~W~~~~~~~~p~~~~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~v~~y~~~~~~W~~~~~  206 (265)
                              ..-+..+...++.|.-  .+.++-.....+....+..|+++||.          ..||.+|+..+.-...-.
T Consensus       324 --------~G~I~lLhakT~eli~--s~KieG~v~~~~fsSdsk~l~~~~~~----------GeV~v~nl~~~~~~~rf~  383 (514)
T KOG2055|consen  324 --------NGHIHLLHAKTKELIT--SFKIEGVVSDFTFSSDSKELLASGGT----------GEVYVWNLRQNSCLHRFV  383 (514)
T ss_pred             --------CceEEeehhhhhhhhh--eeeeccEEeeEEEecCCcEEEEEcCC----------ceEEEEecCCcceEEEEe
Confidence                    2446777777887742  22222222333333345688889884          579999999875333322


Q ss_pred             CCCCCCCCCCceEEEeCCCeEEEEc
Q psy14331        207 LGAGPAPRSGCQMAATPDGKILISG  231 (265)
Q Consensus       207 ~~~~p~~~~~~~~~~~~~~~iyi~G  231 (265)
                      .   -...++.+.+.-.++.++.+|
T Consensus       384 D---~G~v~gts~~~S~ng~ylA~G  405 (514)
T KOG2055|consen  384 D---DGSVHGTSLCISLNGSYLATG  405 (514)
T ss_pred             e---cCccceeeeeecCCCceEEec
Confidence            1   222344455544566645454

>PF13360 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 3Q54_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A

Probab=93.81  E-value=2.6  Score=33.01  Aligned_cols=130  Identities=18%  Similarity=0.226  Sum_probs=74.2

Q ss_pred             CCCEEEEECcEEeCCCceeeCCCcccCceEEEEe------eecCCCCCCCccccceEEEecCCCEEEEEcCcccCCCccc
Q psy14331         58 DKDQLILFGGEFYDGQKFVFGSPKALDHLILMNL------FVSAPGAPPPRCSHQMVALSADKGQLWMFGGEFSSASESQ  131 (265)
Q Consensus        58 ~~~~lyv~GG~~~~~~~~~~~~~~~~~~~~~yd~------w~~~~~~p~~r~~~~~~~~~~~~~~iyv~GG~~~~~~~~~  131 (265)
                      .++.+|+..+               ...++++|.      |....  +.+-... ....   ++.+|+...         
T Consensus        35 ~~~~v~~~~~---------------~~~l~~~d~~tG~~~W~~~~--~~~~~~~-~~~~---~~~v~v~~~---------   84 (238)
T PF13360_consen   35 DGGRVYVASG---------------DGNLYALDAKTGKVLWRFDL--PGPISGA-PVVD---GGRVYVGTS---------   84 (238)
T ss_dssp             ETTEEEEEET---------------TSEEEEEETTTSEEEEEEEC--SSCGGSG-EEEE---TTEEEEEET---------
T ss_pred             eCCEEEEEcC---------------CCEEEEEECCCCCEEEEeec--cccccce-eeec---ccccccccc---------
Confidence            4889999854               578999997      66554  2222212 2333   889988863         


Q ss_pred             cccCCceeEEEcCCC--cEEE-EecCCCCCC-CcCceEEEECCEEEEEcCccCCCCccccCCceEEEEcCCCc--eEEec
Q psy14331        132 FHHYKDLWVFRMGEK--KWEK-IVCKDTPPS-RSGHRMIALKKHLVVFGGFHDNLREAKYYNDVHIFDLETYA--WKKIE  205 (265)
Q Consensus       132 ~~~~~~~~~yd~~~~--~W~~-~~~~~~p~~-~~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~v~~y~~~~~~--W~~~~  205 (265)
                         -+.++.+|..++  .|+. ....+ +.. .........++.+|+...          ...++.+|+.+.+  |+.-.
T Consensus        85 ---~~~l~~~d~~tG~~~W~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~----------~g~l~~~d~~tG~~~w~~~~  150 (238)
T PF13360_consen   85 ---DGSLYALDAKTGKVLWSIYLTSSP-PAGVRSSSSPAVDGDRLYVGTS----------SGKLVALDPKTGKLLWKYPV  150 (238)
T ss_dssp             ---TSEEEEEETTTSCEEEEEEE-SSC-TCSTB--SEEEEETTEEEEEET----------CSEEEEEETTTTEEEEEEES
T ss_pred             ---eeeeEecccCCcceeeeecccccc-ccccccccCceEecCEEEEEec----------cCcEEEEecCCCcEEEEeec
Confidence               246899998776  5883 43321 122 222334444677777553          2568999998754  77655


Q ss_pred             cCCCCCCCCC-------CceEEEeCCCeEEEEcCcc
Q psy14331        206 PLGAGPAPRS-------GCQMAATPDGKILISGGYS  234 (265)
Q Consensus       206 ~~~~~p~~~~-------~~~~~~~~~~~iyi~GG~~  234 (265)
                      ..   +....       ..+...+.++.+|+..+..
T Consensus       151 ~~---~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~g  183 (238)
T PF13360_consen  151 GE---PRGSSPISSFSDINGSPVISDGRVYVSSGDG  183 (238)
T ss_dssp             ST---T-SS--EEEETTEEEEEECCTTEEEEECCTS
T ss_pred             CC---CCCCcceeeecccccceEEECCEEEEEcCCC
Confidence            43   21111       0122334357888877654

...

>PF12768 Rax2: Cortical protein marker for cell polarity

Probab=93.22  E-value=3.9  Score=33.36  Aligned_cols=108  Identities=14%  Similarity=0.171  Sum_probs=63.8

Q ss_pred             cCceEEEEe----eecCCCCCCCccccceEEEecCCCEEEEEcCcccCCCccccccCCceeEEEcCCCcEEEEecC---C
Q psy14331         83 LDHLILMNL----FVSAPGAPPPRCSHQMVALSADKGQLWMFGGEFSSASESQFHHYKDLWVFRMGEKKWEKIVCK---D  155 (265)
Q Consensus        83 ~~~~~~yd~----w~~~~~~p~~r~~~~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~~~yd~~~~~W~~~~~~---~  155 (265)
                      +..+=.||.    |.....-..... .++...  .+++||+.|-.+..+.     ....+..||..+.+|..+...   .
T Consensus        15 C~~lC~yd~~~~qW~~~g~~i~G~V-~~l~~~--~~~~Llv~G~ft~~~~-----~~~~la~yd~~~~~w~~~~~~~s~~   86 (281)
T PF12768_consen   15 CPGLCLYDTDNSQWSSPGNGISGTV-TDLQWA--SNNQLLVGGNFTLNGT-----NSSNLATYDFKNQTWSSLGGGSSNS   86 (281)
T ss_pred             CCEEEEEECCCCEeecCCCCceEEE-EEEEEe--cCCEEEEEEeeEECCC-----CceeEEEEecCCCeeeecCCccccc
Confidence            567778887    888766533322 222222  3678888876544431     145688999999999988762   1


Q ss_pred             CCCCCcCceEEEE-CCEEEEEcCccCCCCccccCCceEEEEcCCCceEEecc
Q psy14331        156 TPPSRSGHRMIAL-KKHLVVFGGFHDNLREAKYYNDVHIFDLETYAWKKIEP  206 (265)
Q Consensus       156 ~p~~~~~~~~~~~-~~~iyv~GG~~~~~~~~~~~~~v~~y~~~~~~W~~~~~  206 (265)
                      .|.+......... ...+++.|.. ..+     ..-|..|  +..+|..+..
T Consensus        87 ipgpv~a~~~~~~d~~~~~~aG~~-~~g-----~~~l~~~--dGs~W~~i~~  130 (281)
T PF12768_consen   87 IPGPVTALTFISNDGSNFWVAGRS-ANG-----STFLMKY--DGSSWSSIGS  130 (281)
T ss_pred             CCCcEEEEEeeccCCceEEEecee-cCC-----CceEEEE--cCCceEeccc
Confidence            3444422222222 3467777765 221     2345555  6778888776

>cd00094 HX Hemopexin-like repeats

Probab=92.57  E-value=3.7  Score=31.40  Aligned_cols=61  Identities=16%  Similarity=0.327  Sum_probs=37.3

Q ss_pred             CCEEEEEcCcccCCCccccccCCceeEEEcCCCcEEEE-----ec--CCCCCCCcCceEEEE-CCEEEEEcCccCCCCcc
Q psy14331        114 KGQLWMFGGEFSSASESQFHHYKDLWVFRMGEKKWEKI-----VC--KDTPPSRSGHRMIAL-KKHLVVFGGFHDNLREA  185 (265)
Q Consensus       114 ~~~iyv~GG~~~~~~~~~~~~~~~~~~yd~~~~~W~~~-----~~--~~~p~~~~~~~~~~~-~~~iyv~GG~~~~~~~~  185 (265)
                      ++++|++.|             +..++||..+++...-     ..  ...|...  .++... ++++|+|-|        
T Consensus       110 ~~~~yfFkg-------------~~y~ry~~~~~~v~~~yP~~i~~~w~g~p~~i--daa~~~~~~~~yfF~g--------  166 (194)
T cd00094         110 NGKTYFFKG-------------DKYWRYDEKTQKMDPGYPKLIETDFPGVPDKV--DAAFRWLDGYYYFFKG--------  166 (194)
T ss_pred             CCEEEEEeC-------------CEEEEEeCCCccccCCCCcchhhcCCCcCCCc--ceeEEeCCCcEEEEEC--------
Confidence            689999988             3477888655543211     00  1122222  234444 488999987        


Q ss_pred             ccCCceEEEEcCCCc
Q psy14331        186 KYYNDVHIFDLETYA  200 (265)
Q Consensus       186 ~~~~~v~~y~~~~~~  200 (265)
                         +..++||..+.+
T Consensus       167 ---~~y~~~d~~~~~  178 (194)
T cd00094         167 ---DQYWRFDPRSKE  178 (194)
T ss_pred             ---CEEEEEeCccce
Confidence               468999988766

; Hemopexin is a heme-binding protein that transports heme to the liver. Hemopexin-like repeats occur in vitronectin and some matrix metalloproteinases family (matrixins). The HX repeats of some matrixins bind tissue inhibitor of metalloproteinases (TIMPs). This CD contains 4 instances of the repeat.

>PF05096 Glu_cyclase_2: Glutamine cyclotransferase; InterPro: IPR007788 This family of enzymes 2

Probab=92.15  E-value=5.3  Score=32.16  Aligned_cols=95  Identities=23%  Similarity=0.319  Sum_probs=62.9

Q ss_pred             CCEEEEEcCcccCCCccccccCCceeEEEcCCCcEEEEecCCCCCCCcCceEEEECCEEEEEcCccCCCCccccCCceEE
Q psy14331        114 KGQLWMFGGEFSSASESQFHHYKDLWVFRMGEKKWEKIVCKDTPPSRSGHRMIALKKHLVVFGGFHDNLREAKYYNDVHI  193 (265)
Q Consensus       114 ~~~iyv~GG~~~~~~~~~~~~~~~~~~yd~~~~~W~~~~~~~~p~~~~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~v~~  193 (265)
                      ++.||.--|...         .+.+.++|+.+++-.....+  |..-++-+++.++++||..-=.         ......
T Consensus        55 ~g~LyESTG~yG---------~S~l~~~d~~tg~~~~~~~l--~~~~FgEGit~~~d~l~qLTWk---------~~~~f~  114 (264)
T PF05096_consen   55 DGTLYESTGLYG---------QSSLRKVDLETGKVLQSVPL--PPRYFGEGITILGDKLYQLTWK---------EGTGFV  114 (264)
T ss_dssp             TTEEEEEECSTT---------EEEEEEEETTTSSEEEEEE---TTT--EEEEEEETTEEEEEESS---------SSEEEE
T ss_pred             CCEEEEeCCCCC---------cEEEEEEECCCCcEEEEEEC--CccccceeEEEECCEEEEEEec---------CCeEEE
Confidence            789999888643         36788999999986665555  4666777889999999998643         345778


Q ss_pred             EEcCCCceEEeccCCCCCCCCCCceEEEeCCCeEEEEcCcc
Q psy14331        194 FDLETYAWKKIEPLGAGPAPRSGCQMAATPDGKILISGGYS  234 (265)
Q Consensus       194 y~~~~~~W~~~~~~~~~p~~~~~~~~~~~~~~~iyi~GG~~  234 (265)
                      ||+.+  .+.+...   +.+.-+.+++.- +..+++.-|.+
T Consensus       115 yd~~t--l~~~~~~---~y~~EGWGLt~d-g~~Li~SDGS~  149 (264)
T PF05096_consen  115 YDPNT--LKKIGTF---PYPGEGWGLTSD-GKRLIMSDGSS  149 (264)
T ss_dssp             EETTT--TEEEEEE---E-SSS--EEEEC-SSCEEEE-SSS
T ss_pred             Ecccc--ceEEEEE---ecCCcceEEEcC-CCEEEEECCcc
Confidence            98875  4555552   444567777643 66788887754

3.2.5 from EC catalyse the cyclization of free L-glutamine and N-terminal glutaminyl residues in proteins to pyroglutamate (5-oxoproline) and pyroglutamyl residues respectively []. This family includes plant and bacterial enzymes and seems unrelated to the mammalian enzymes.; PDB: 3NOK_B 2FAW_A 2IWA_A 3NOM_A 3NOL_A 3MBR_X.

>PRK13684 Ycf48-like protein; Provisional

Probab=91.52  E-value=7.5  Score=32.64  Aligned_cols=80  Identities=16%  Similarity=0.199  Sum_probs=41.2

Q ss_pred             ceeEEEcCCCcEEEEecCCCCCCCcCceEEEECCEEEEEcCccCCCCccccCCceEEE-EcCCCceEEeccCCCCCCCCC
Q psy14331        137 DLWVFRMGEKKWEKIVCKDTPPSRSGHRMIALKKHLVVFGGFHDNLREAKYYNDVHIF-DLETYAWKKIEPLGAGPAPRS  215 (265)
Q Consensus       137 ~~~~yd~~~~~W~~~~~~~~p~~~~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~v~~y-~~~~~~W~~~~~~~~~p~~~~  215 (265)
                      .+++=+-...+|+.+...   ..-..+.+....+..++..|..+         .++.- +....+|+.+..    +..+.
T Consensus       153 ~i~~S~DgG~tW~~~~~~---~~g~~~~i~~~~~g~~v~~g~~G---------~i~~s~~~gg~tW~~~~~----~~~~~  216 (334)
T PRK13684        153 AIYRTTDGGKNWEALVED---AAGVVRNLRRSPDGKYVAVSSRG---------NFYSTWEPGQTAWTPHQR----NSSRR  216 (334)
T ss_pred             eEEEECCCCCCceeCcCC---CcceEEEEEECCCCeEEEEeCCc---------eEEEEcCCCCCeEEEeeC----CCccc
Confidence            355555556799987543   22233344444443444433322         23332 334467998865    33344


Q ss_pred             CceEEEeCCCeEEEEcC
Q psy14331        216 GCQMAATPDGKILISGG  232 (265)
Q Consensus       216 ~~~~~~~~~~~iyi~GG  232 (265)
                      -..++...++.++++|.
T Consensus       217 l~~i~~~~~g~~~~vg~  233 (334)
T PRK13684        217 LQSMGFQPDGNLWMLAR  233 (334)
T ss_pred             ceeeeEcCCCCEEEEec
Confidence            44555555667777664

>PF02191 OLF: Olfactomedin-like domain; InterPro: IPR003112 The olfactomedin-domain was first identified in olfactomedin, an extracellular matrix protein of the olfactory neuroepithelium []

Probab=91.37  E-value=6.4  Score=31.56  Aligned_cols=130  Identities=16%  Similarity=0.155  Sum_probs=73.0

Q ss_pred             cCceEEEEe-------eecCCCC------CCCccccceEEEecCCCEEEEEcCcccCCCccccccCCceeEEEcCCC---
Q psy14331         83 LDHLILMNL-------FVSAPGA------PPPRCSHQMVALSADKGQLWMFGGEFSSASESQFHHYKDLWVFRMGEK---  146 (265)
Q Consensus        83 ~~~~~~yd~-------w~~~~~~------p~~r~~~~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~~~yd~~~~---  146 (265)
                      ++.+.+||+       +..++..      |....+++-+-++++++-|+|+-...+.+.      .--+-+.|+.+-   
T Consensus        88 s~~IvkydL~t~~v~~~~~L~~A~~~n~~~y~~~~~t~iD~AvDE~GLWvIYat~~~~g------~ivvskld~~tL~v~  161 (250)
T PF02191_consen   88 SRNIVKYDLTTRSVVARRELPGAGYNNRFPYYWSGYTDIDFAVDENGLWVIYATEDNNG------NIVVSKLDPETLSVE  161 (250)
T ss_pred             CceEEEEECcCCcEEEEEECCccccccccceecCCCceEEEEEcCCCEEEEEecCCCCC------cEEEEeeCcccCceE
Confidence            789999999       2223221      222344555666666777777755433321      122456677653   


Q ss_pred             -cEEEEecCCCCCCCcCceEEEECCEEEEEcCccCCCCccccCCceEEEEcCCCceEEeccCCCCCCCCCCceEEEeC--
Q psy14331        147 -KWEKIVCKDTPPSRSGHRMIALKKHLVVFGGFHDNLREAKYYNDVHIFDLETYAWKKIEPLGAGPAPRSGCQMAATP--  223 (265)
Q Consensus       147 -~W~~~~~~~~p~~~~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~v~~y~~~~~~W~~~~~~~~~p~~~~~~~~~~~~--  223 (265)
                       +|..-  .   ..+....+.++-+.||++-......     ..-.+.||+.+++=+.+.-.  .+.+-..++++...  
T Consensus       162 ~tw~T~--~---~k~~~~naFmvCGvLY~~~s~~~~~-----~~I~yafDt~t~~~~~~~i~--f~~~~~~~~~l~YNP~  229 (250)
T PF02191_consen  162 QTWNTS--Y---PKRSAGNAFMVCGVLYATDSYDTRD-----TEIFYAFDTYTGKEEDVSIP--FPNPYGNISMLSYNPR  229 (250)
T ss_pred             EEEEec--c---CchhhcceeeEeeEEEEEEECCCCC-----cEEEEEEECCCCceeceeee--eccccCceEeeeECCC
Confidence             46431  1   2334445777788999987664432     23457899998876655543  23333334444332  


Q ss_pred             CCeEEEE
Q psy14331        224 DGKILIS  230 (265)
Q Consensus       224 ~~~iyi~  230 (265)
                      +.+||+.
T Consensus       230 dk~LY~w  236 (250)
T PF02191_consen  230 DKKLYAW  236 (250)
T ss_pred             CCeEEEE
Confidence            5678887

Members of this extracellular domain-family have since been shown to be present in several metazoan proteins, such as latrophilins, myocilins, optimedins and noelins, the latter being involved in the generation of neural crest cells. Myocilin is of considerable interest, as mutations in its olfactomedin-domain can lead to glaucoma []. The olfactomedin-domains in myocilin and optimedin are essential for the interaction between these two proteins [].; GO: 0005515 protein binding

>PRK04792 tolB translocation protein TolB; Provisional

Probab=91.05  E-value=7.6  Score=34.08  Aligned_cols=144  Identities=14%  Similarity=0.136  Sum_probs=72.8

Q ss_pred             HHHHhhcccceEEEeccCCCCCCCceeeEEecCCCEEEEECcEEeCCCceeeCCCcccCceEEEEe----eecCCCCCCC
Q psy14331         26 DIEAEEKRKNKVIEKVVPEPTRRANFSFLAHPDKDQLILFGGEFYDGQKFVFGSPKALDHLILMNL----FVSAPGAPPP  101 (265)
Q Consensus        26 ~~~~~d~~~~~w~~~~~~~p~~r~~~~~~~~~~~~~lyv~GG~~~~~~~~~~~~~~~~~~~~~yd~----w~~~~~~p~~  101 (265)
                      .++.+|..+.+-.. ....+.  ...+...-|+++.|++...  .++          ..+++.+|+    ......   .
T Consensus       243 ~L~~~dl~tg~~~~-lt~~~g--~~~~~~wSPDG~~La~~~~--~~g----------~~~Iy~~dl~tg~~~~lt~---~  304 (448)
T PRK04792        243 EIFVQDIYTQVREK-VTSFPG--INGAPRFSPDGKKLALVLS--KDG----------QPEIYVVDIATKALTRITR---H  304 (448)
T ss_pred             EEEEEECCCCCeEE-ecCCCC--CcCCeeECCCCCEEEEEEe--CCC----------CeEEEEEECCCCCeEECcc---C
Confidence            46666666555444 222222  1223445567777776533  121          357888888    222221   1


Q ss_pred             ccccceEEEecCCCEEEEEcCcccCCCccccccCCceeEEEcCCCcEEEEecCCCCCCCcCceEEEEC-CEEEEEcCccC
Q psy14331        102 RCSHQMVALSADKGQLWMFGGEFSSASESQFHHYKDLWVFRMGEKKWEKIVCKDTPPSRSGHRMIALK-KHLVVFGGFHD  180 (265)
Q Consensus       102 r~~~~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~~~yd~~~~~W~~~~~~~~p~~~~~~~~~~~~-~~iyv~GG~~~  180 (265)
                      ............++.|++......         ..+++.+|..+++++.+....   .........-+ +.|++.. ...
T Consensus       305 ~~~~~~p~wSpDG~~I~f~s~~~g---------~~~Iy~~dl~~g~~~~Lt~~g---~~~~~~~~SpDG~~l~~~~-~~~  371 (448)
T PRK04792        305 RAIDTEPSWHPDGKSLIFTSERGG---------KPQIYRVNLASGKVSRLTFEG---EQNLGGSITPDGRSMIMVN-RTN  371 (448)
T ss_pred             CCCccceEECCCCCEEEEEECCCC---------CceEEEEECCCCCEEEEecCC---CCCcCeeECCCCCEEEEEE-ecC
Confidence            111122223333455655432211         357999999999988875321   11111122224 4555443 222


Q ss_pred             CCCccccCCceEEEEcCCCceEEecc
Q psy14331        181 NLREAKYYNDVHIFDLETYAWKKIEP  206 (265)
Q Consensus       181 ~~~~~~~~~~v~~y~~~~~~W~~~~~  206 (265)
                      .      ...|+.+|+.+...+.+..
T Consensus       372 g------~~~I~~~dl~~g~~~~lt~  391 (448)
T PRK04792        372 G------KFNIARQDLETGAMQVLTS  391 (448)
T ss_pred             C------ceEEEEEECCCCCeEEccC
Confidence            1      2468999999988777654

>TIGR03075 PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methanol/ethanol family

Probab=91.03  E-value=11  Score=33.82  Aligned_cols=114  Identities=11%  Similarity=0.103  Sum_probs=60.8

Q ss_pred             CCCEEEEECcEEeCCCceeeCCCcccCceEEEEe------eecCCCCCCCc--------cccceEEEecCCCEEEEEcCc
Q psy14331         58 DKDQLILFGGEFYDGQKFVFGSPKALDHLILMNL------FVSAPGAPPPR--------CSHQMVALSADKGQLWMFGGE  123 (265)
Q Consensus        58 ~~~~lyv~GG~~~~~~~~~~~~~~~~~~~~~yd~------w~~~~~~p~~r--------~~~~~~~~~~~~~~iyv~GG~  123 (265)
                      .++.||+...               ...++.+|.      |......+...        .....++.   +++||+... 
T Consensus        68 ~~g~vyv~s~---------------~g~v~AlDa~TGk~lW~~~~~~~~~~~~~~~~~~~~rg~av~---~~~v~v~t~-  128 (527)
T TIGR03075        68 VDGVMYVTTS---------------YSRVYALDAKTGKELWKYDPKLPDDVIPVMCCDVVNRGVALY---DGKVFFGTL-  128 (527)
T ss_pred             ECCEEEEECC---------------CCcEEEEECCCCceeeEecCCCCcccccccccccccccceEE---CCEEEEEcC-
Confidence            3889998665               356778887      76554333211        11222222   778887432 


Q ss_pred             ccCCCccccccCCceeEEEcCCCc--EEEEecCCCCCCCcCceEEEECCEEEEEcCccCCCCccccCCceEEEEcCCCc-
Q psy14331        124 FSSASESQFHHYKDLWVFRMGEKK--WEKIVCKDTPPSRSGHRMIALKKHLVVFGGFHDNLREAKYYNDVHIFDLETYA-  200 (265)
Q Consensus       124 ~~~~~~~~~~~~~~~~~yd~~~~~--W~~~~~~~~p~~~~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~v~~y~~~~~~-  200 (265)
                                 -..+..+|.++++  |+.-............+-++.++.+|+-......    .....|..||.++.+ 
T Consensus       129 -----------dg~l~ALDa~TGk~~W~~~~~~~~~~~~~tssP~v~~g~Vivg~~~~~~----~~~G~v~AlD~~TG~~  193 (527)
T TIGR03075       129 -----------DARLVALDAKTGKVVWSKKNGDYKAGYTITAAPLVVKGKVITGISGGEF----GVRGYVTAYDAKTGKL  193 (527)
T ss_pred             -----------CCEEEEEECCCCCEEeecccccccccccccCCcEEECCEEEEeeccccc----CCCcEEEEEECCCCce
Confidence                       2458999998874  7653211100011122344557777764221111    123568889998854 


Q ss_pred             -eEEec
Q psy14331        201 -WKKIE  205 (265)
Q Consensus       201 -W~~~~  205 (265)
                       |+.-.
T Consensus       194 lW~~~~  199 (527)
T TIGR03075       194 VWRRYT  199 (527)
T ss_pred             eEeccC
Confidence             76443

This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Genes in this family often are found adjacent to the PQQ biosynthesis genes themselves. An unusual, strained disulfide bond between adjacent Cys residues contributes to PQQ-binding, as does a Trp residue that is part of a PQQ enzyme repeat (see pfam01011). Characterized members include the dehydrogenase subunit of a membrane-anchored, three subunit alcohol (ethanol) dehydrogenase of Gluconobacter suboxydans, a homodimeric ethanol dehydrogenase in Pseudomonas aeruginosa, and the large subunit of an alpha2/beta2 heterotetrameric methanol dehydrogenase in Methylobacterium extorquens.

>PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3

Probab=89.52  E-value=6.6  Score=33.07  Aligned_cols=143  Identities=13%  Similarity=0.110  Sum_probs=73.0

Q ss_pred             HHHhhcccce--EEEec-cCCCCCCCceeeEEecCCCEEEEECcEEeCCCceeeCCCcccCceEEEEe---------eec
Q psy14331         27 IEAEEKRKNK--VIEKV-VPEPTRRANFSFLAHPDKDQLILFGGEFYDGQKFVFGSPKALDHLILMNL---------FVS   94 (265)
Q Consensus        27 ~~~~d~~~~~--w~~~~-~~~p~~r~~~~~~~~~~~~~lyv~GG~~~~~~~~~~~~~~~~~~~~~yd~---------w~~   94 (265)
                      ++.|+.....  ..... ...|..-....+++.++++.+||+.-.              .+.+..|+.         ...
T Consensus       168 v~~~~~~~~~~~l~~~~~~~~~~G~GPRh~~f~pdg~~~Yv~~e~--------------s~~v~v~~~~~~~g~~~~~~~  233 (345)
T PF10282_consen  168 VYVYDIDDDTGKLTPVDSIKVPPGSGPRHLAFSPDGKYAYVVNEL--------------SNTVSVFDYDPSDGSLTEIQT  233 (345)
T ss_dssp             EEEEEE-TTS-TEEEEEEEECSTTSSEEEEEE-TTSSEEEEEETT--------------TTEEEEEEEETTTTEEEEEEE
T ss_pred             EEEEEEeCCCceEEEeeccccccCCCCcEEEEcCCcCEEEEecCC--------------CCcEEEEeecccCCceeEEEE
Confidence            6666665554  43311 123333333456677788899998652              344444444         222


Q ss_pred             CCCCCC---CccccceEEEecCCCEEEEEcCcccCCCccccccCCceeEEEc--CCCcEEEEecCC--CCCCCcCceEEE
Q psy14331         95 APGAPP---PRCSHQMVALSADKGQLWMFGGEFSSASESQFHHYKDLWVFRM--GEKKWEKIVCKD--TPPSRSGHRMIA  167 (265)
Q Consensus        95 ~~~~p~---~r~~~~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~~~yd~--~~~~W~~~~~~~--~p~~~~~~~~~~  167 (265)
                      .+.+|.   .....+.+.+...++.||+.-..           .+.+..|++  .+++.+.+....  ...||.   ++.
T Consensus       234 ~~~~~~~~~~~~~~~~i~ispdg~~lyvsnr~-----------~~sI~vf~~d~~~g~l~~~~~~~~~G~~Pr~---~~~  299 (345)
T PF10282_consen  234 ISTLPEGFTGENAPAEIAISPDGRFLYVSNRG-----------SNSISVFDLDPATGTLTLVQTVPTGGKFPRH---FAF  299 (345)
T ss_dssp             EESCETTSCSSSSEEEEEE-TTSSEEEEEECT-----------TTEEEEEEECTTTTTEEEEEEEEESSSSEEE---EEE
T ss_pred             eeeccccccccCCceeEEEecCCCEEEEEecc-----------CCEEEEEEEecCCCceEEEEEEeCCCCCccE---EEE
Confidence            233332   22234445565556788887543           356777776  456666554332  112332   222


Q ss_pred             --ECCEEEEEcCccCCCCccccCCceEEE--EcCCCceEEecc
Q psy14331        168 --LKKHLVVFGGFHDNLREAKYYNDVHIF--DLETYAWKKIEP  206 (265)
Q Consensus       168 --~~~~iyv~GG~~~~~~~~~~~~~v~~y--~~~~~~W~~~~~  206 (265)
                        .++.+|+....         .+.|..|  |..+..++.+..
T Consensus       300 s~~g~~l~Va~~~---------s~~v~vf~~d~~tG~l~~~~~  333 (345)
T PF10282_consen  300 SPDGRYLYVANQD---------SNTVSVFDIDPDTGKLTPVGS  333 (345)
T ss_dssp             -TTSSEEEEEETT---------TTEEEEEEEETTTTEEEEEEE
T ss_pred             eCCCCEEEEEecC---------CCeEEEEEEeCCCCcEEEecc
Confidence              24566664432         2445555  567788887764

1.1.31 from EC, which hydrolyses 6-phosphogluconolactone to 6-phosphogluconate is opne of the enzymes in the pentose phosphate pathway. Two families of structurally dissimilar 6PGLs are known to exist: the Escherichia coli (strain K12) YbhE IPR022528 from INTERPRO [] and the Pseudomonas aeruginosa DevB IPR005900 from INTERPRO [] types. This entry contains bacterial 6-phosphogluconolactonases (6PGL) YbhE-type 3.1.1.31 from EC which hydrolyse 6-phosphogluconolactone to 6-phosphogluconate. The entry also contains the fungal muconate lactonizing enzyme carboxy-cis,cis-muconate cyclase 5.5.1.5 from EC and muconate cycloisomerase 5.5.1.1 from EC, which convert cis,cis-muconates to muconolactones and vice versa as part of the microbial beta-ketoadipate pathway. Structures have been reported for the E. coli 6-phosphogluconolactonase and Neurospora crassa muconate cycloisomerase. Structures of proteins in this family have revealed a 7-bladed beta-propeller fold [].; PDB: 3SCY_A 1L0Q_A 3HFQ_B 3FGB_A 1RI6_A 3U4Y_A 3BWS_A 1JOF_H.

>PRK04792 tolB translocation protein TolB; Provisional

Probab=89.07  E-value=15  Score=32.26  Aligned_cols=61  Identities=8%  Similarity=0.065  Sum_probs=36.4

Q ss_pred             CceeEEEcCCCcEEEEecCCCCCCCcCceEEEECC-EEEEEcCccCCCCccccCCceEEEEcCCCceEEecc
Q psy14331        136 KDLWVFRMGEKKWEKIVCKDTPPSRSGHRMIALKK-HLVVFGGFHDNLREAKYYNDVHIFDLETYAWKKIEP  206 (265)
Q Consensus       136 ~~~~~yd~~~~~W~~~~~~~~p~~~~~~~~~~~~~-~iyv~GG~~~~~~~~~~~~~v~~y~~~~~~W~~~~~  206 (265)
                      .+++.+|..+++.+.+....   .........-++ .|++.....+       ...++.+|+.+.+++++..
T Consensus       286 ~~Iy~~dl~tg~~~~lt~~~---~~~~~p~wSpDG~~I~f~s~~~g-------~~~Iy~~dl~~g~~~~Lt~  347 (448)
T PRK04792        286 PEIYVVDIATKALTRITRHR---AIDTEPSWHPDGKSLIFTSERGG-------KPQIYRVNLASGKVSRLTF  347 (448)
T ss_pred             eEEEEEECCCCCeEECccCC---CCccceEECCCCCEEEEEECCCC-------CceEEEEECCCCCEEEEec
Confidence            57999999998887765321   111111222234 4544432211       2479999999999988764

>PF08268 FBA_3: F-box associated domain; InterPro: IPR013187 This domain occurs in a diverse superfamily of genes in plants

Probab=88.71  E-value=6.6  Score=27.69  Aligned_cols=83  Identities=12%  Similarity=0.113  Sum_probs=49.3

Q ss_pred             EECCEEEEEcCccCCCCccccCCceEEEEcCCCceEEeccCCCCCCCCCCceEEEeCCCeEEEEcCccccccccccccce
Q psy14331        167 ALKKHLVVFGGFHDNLREAKYYNDVHIFDLETYAWKKIEPLGAGPAPRSGCQMAATPDGKILISGGYSKQSVKKDVDKGI  246 (265)
Q Consensus       167 ~~~~~iyv~GG~~~~~~~~~~~~~v~~y~~~~~~W~~~~~~~~~p~~~~~~~~~~~~~~~iyi~GG~~~~~~~~~~~~~~  246 (265)
                      .+||.+|-..-...     .....|.+||..+.+|+.+..+...........++.. +|+|-++.-.....        .
T Consensus         3 cinGvly~~a~~~~-----~~~~~IvsFDv~~E~f~~i~~P~~~~~~~~~~~L~~~-~G~L~~v~~~~~~~--------~   68 (129)
T PF08268_consen    3 CINGVLYWLAWSED-----SDNNVIVSFDVRSEKFRFIKLPEDPYSSDCSSTLIEY-KGKLALVSYNDQGE--------P   68 (129)
T ss_pred             EECcEEEeEEEECC-----CCCcEEEEEEcCCceEEEEEeeeeeccccCccEEEEe-CCeEEEEEecCCCC--------c
Confidence            35777777665411     2257799999999999988873111233344555555 78877764332111        1


Q ss_pred             eeceEEEEe-cCcccccc
Q psy14331        247 VHTDTFLLT-PDSKTLRS  263 (265)
Q Consensus       247 ~~~~~w~~~-~~~~~w~~  263 (265)
                      ..=++|.++ .+...|.+
T Consensus        69 ~~~~iWvLeD~~k~~Wsk   86 (129)
T PF08268_consen   69 DSIDIWVLEDYEKQEWSK   86 (129)
T ss_pred             ceEEEEEeeccccceEEE
Confidence            234588885 44567765

Most examples are found C-terminal to an F-box (IPR001810 from INTERPRO), a 60 amino acid motif involved in ubiquitination of target proteins to mark them for degradation. Two-hybid experiments support the idea that most members are interchangeable F-box subunits of SCF E3 complexes []. Some members have two copies of this domain.

>KOG0310|consensus

Probab=88.14  E-value=17  Score=31.65  Aligned_cols=105  Identities=14%  Similarity=0.221  Sum_probs=55.1

Q ss_pred             CCCEEEEECcEEeCCCceeeCCCcccCceEEEEe-------eecCCCCCCCccccceEEEecCCCEEEEEcCcccCCCcc
Q psy14331         58 DKDQLILFGGEFYDGQKFVFGSPKALDHLILMNL-------FVSAPGAPPPRCSHQMVALSADKGQLWMFGGEFSSASES  130 (265)
Q Consensus        58 ~~~~lyv~GG~~~~~~~~~~~~~~~~~~~~~yd~-------w~~~~~~p~~r~~~~~~~~~~~~~~iyv~GG~~~~~~~~  130 (265)
                      .+++|..+|+.              ...+.+||.       .......|..+     +-....++.+++.|+.+.     
T Consensus        78 ~DG~LlaaGD~--------------sG~V~vfD~k~r~iLR~~~ah~apv~~-----~~f~~~d~t~l~s~sDd~-----  133 (487)
T KOG0310|consen   78 SDGRLLAAGDE--------------SGHVKVFDMKSRVILRQLYAHQAPVHV-----TKFSPQDNTMLVSGSDDK-----  133 (487)
T ss_pred             cCCeEEEccCC--------------cCcEEEeccccHHHHHHHhhccCceeE-----EEecccCCeEEEecCCCc-----
Confidence            57888888883              456677775       01111112111     122233889999988432     


Q ss_pred             ccccCCceeEEEcCCCcEEEEecCCCCCCCcCceEEEECCEEEEEcCccCCCCccccCCceEEEEcCCC-ceE
Q psy14331        131 QFHHYKDLWVFRMGEKKWEKIVCKDTPPSRSGHRMIALKKHLVVFGGFHDNLREAKYYNDVHIFDLETY-AWK  202 (265)
Q Consensus       131 ~~~~~~~~~~yd~~~~~W~~~~~~~~p~~~~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~v~~y~~~~~-~W~  202 (265)
                            -+-..|..+..- .........-..+..+...+++|++-||+++.         |-.||+.+. .|.
T Consensus       134 ------v~k~~d~s~a~v-~~~l~~htDYVR~g~~~~~~~hivvtGsYDg~---------vrl~DtR~~~~~v  190 (487)
T KOG0310|consen  134 ------VVKYWDLSTAYV-QAELSGHTDYVRCGDISPANDHIVVTGSYDGK---------VRLWDTRSLTSRV  190 (487)
T ss_pred             ------eEEEEEcCCcEE-EEEecCCcceeEeeccccCCCeEEEecCCCce---------EEEEEeccCCcee
Confidence                  122334433332 22222111222233444558899999998654         667888776 443

>TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL

Probab=86.67  E-value=19  Score=30.62  Aligned_cols=101  Identities=10%  Similarity=0.086  Sum_probs=58.3

Q ss_pred             CCCEEEEECcEEeCCCceeeCCCcccCceEEEEe------eecCCCCCCCccccceEEEecCCCEEEEEcCcccCCCccc
Q psy14331         58 DKDQLILFGGEFYDGQKFVFGSPKALDHLILMNL------FVSAPGAPPPRCSHQMVALSADKGQLWMFGGEFSSASESQ  131 (265)
Q Consensus        58 ~~~~lyv~GG~~~~~~~~~~~~~~~~~~~~~yd~------w~~~~~~p~~r~~~~~~~~~~~~~~iyv~GG~~~~~~~~~  131 (265)
                      .++++|+.+.               ...++++|.      |...-.-  . .. +...+.  ++.+|+.+.         
T Consensus        64 ~~~~v~v~~~---------------~g~v~a~d~~tG~~~W~~~~~~--~-~~-~~p~v~--~~~v~v~~~---------  113 (377)
T TIGR03300        64 AGGKVYAADA---------------DGTVVALDAETGKRLWRVDLDE--R-LS-GGVGAD--GGLVFVGTE---------  113 (377)
T ss_pred             ECCEEEEECC---------------CCeEEEEEccCCcEeeeecCCC--C-cc-cceEEc--CCEEEEEcC---------
Confidence            3888888765               357888886      6543222  1 11 122332  777876543         


Q ss_pred             cccCCceeEEEcCCCc--EEEEecCCCCCCCcCceEEEECCEEEEEcCccCCCCccccCCceEEEEcCCC--ceEEecc
Q psy14331        132 FHHYKDLWVFRMGEKK--WEKIVCKDTPPSRSGHRMIALKKHLVVFGGFHDNLREAKYYNDVHIFDLETY--AWKKIEP  206 (265)
Q Consensus       132 ~~~~~~~~~yd~~~~~--W~~~~~~~~p~~~~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~v~~y~~~~~--~W~~~~~  206 (265)
                         -..++.+|..+++  |+.-..    ... ....+..++.+|+..+          ...++.+|+.+.  .|+.-..
T Consensus       114 ---~g~l~ald~~tG~~~W~~~~~----~~~-~~~p~v~~~~v~v~~~----------~g~l~a~d~~tG~~~W~~~~~  174 (377)
T TIGR03300       114 ---KGEVIALDAEDGKELWRAKLS----SEV-LSPPLVANGLVVVRTN----------DGRLTALDAATGERLWTYSRV  174 (377)
T ss_pred             ---CCEEEEEECCCCcEeeeeccC----cee-ecCCEEECCEEEEECC----------CCeEEEEEcCCCceeeEEccC
Confidence               2468999987764  865321    111 1223345777777533          246899998865  4875443

Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ.

>PF08268 FBA_3: F-box associated domain; InterPro: IPR013187 This domain occurs in a diverse superfamily of genes in plants

Probab=86.53  E-value=9.2  Score=26.95  Aligned_cols=83  Identities=18%  Similarity=0.213  Sum_probs=54.3

Q ss_pred             CCEEEEEcCcccCCCccccccCCceeEEEcCCCcEEEEecC-CCCCCCcCceEEEECCEEEEEcCccCCCCccccCCceE
Q psy14331        114 KGQLWMFGGEFSSASESQFHHYKDLWVFRMGEKKWEKIVCK-DTPPSRSGHRMIALKKHLVVFGGFHDNLREAKYYNDVH  192 (265)
Q Consensus       114 ~~~iyv~GG~~~~~~~~~~~~~~~~~~yd~~~~~W~~~~~~-~~p~~~~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~v~  192 (265)
                      +|.+|-..-...       .....+.+||+.+.+|+.++.. ..........++..+++|-++.-.....   ...-++|
T Consensus         5 nGvly~~a~~~~-------~~~~~IvsFDv~~E~f~~i~~P~~~~~~~~~~~L~~~~G~L~~v~~~~~~~---~~~~~iW   74 (129)
T PF08268_consen    5 NGVLYWLAWSED-------SDNNVIVSFDVRSEKFRFIKLPEDPYSSDCSSTLIEYKGKLALVSYNDQGE---PDSIDIW   74 (129)
T ss_pred             CcEEEeEEEECC-------CCCcEEEEEEcCCceEEEEEeeeeeccccCccEEEEeCCeEEEEEecCCCC---cceEEEE
Confidence            788887766511       1257799999999999988753 1123445567777888888865443221   1134677


Q ss_pred             EE-EcCCCceEEecc
Q psy14331        193 IF-DLETYAWKKIEP  206 (265)
Q Consensus       193 ~y-~~~~~~W~~~~~  206 (265)
                      .. |..+..|.+...
T Consensus        75 vLeD~~k~~Wsk~~~   89 (129)
T PF08268_consen   75 VLEDYEKQEWSKKHI   89 (129)
T ss_pred             EeeccccceEEEEEE
Confidence            77 456788987755

Most examples are found C-terminal to an F-box (IPR001810 from INTERPRO), a 60 amino acid motif involved in ubiquitination of target proteins to mark them for degradation. Two-hybid experiments support the idea that most members are interchangeable F-box subunits of SCF E3 complexes []. Some members have two copies of this domain.

>PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3

Probab=86.22  E-value=19  Score=30.30  Aligned_cols=125  Identities=16%  Similarity=0.219  Sum_probs=64.9

Q ss_pred             CCCceeeEEecCCCEEEEECcEEeCCCceeeCCCcccCceEEEEe------eecCC--CCCCCccccceEEEecCCCEEE
Q psy14331         47 RRANFSFLAHPDKDQLILFGGEFYDGQKFVFGSPKALDHLILMNL------FVSAP--GAPPPRCSHQMVALSADKGQLW  118 (265)
Q Consensus        47 ~r~~~~~~~~~~~~~lyv~GG~~~~~~~~~~~~~~~~~~~~~yd~------w~~~~--~~p~~r~~~~~~~~~~~~~~iy  118 (265)
                      ....|.+.+.|+++.+|+.-=    +          .+.++.|+.      .....  ..|.. .+...+.+...++.+|
T Consensus       143 ~~h~H~v~~~pdg~~v~v~dl----G----------~D~v~~~~~~~~~~~l~~~~~~~~~~G-~GPRh~~f~pdg~~~Y  207 (345)
T PF10282_consen  143 GPHPHQVVFSPDGRFVYVPDL----G----------ADRVYVYDIDDDTGKLTPVDSIKVPPG-SGPRHLAFSPDGKYAY  207 (345)
T ss_dssp             STCEEEEEE-TTSSEEEEEET----T----------TTEEEEEEE-TTS-TEEEEEEEECSTT-SSEEEEEE-TTSSEEE
T ss_pred             cccceeEEECCCCCEEEEEec----C----------CCEEEEEEEeCCCceEEEeeccccccC-CCCcEEEEcCCcCEEE
Confidence            345677788888888988521    1          577888888      11101  12221 2222233444467899


Q ss_pred             EEcCcccCCCccccccCCceeEEEcC--CCcEEEEecCC-CCCC---C-cCceEEEE--CCEEEEEcCccCCCCccccCC
Q psy14331        119 MFGGEFSSASESQFHHYKDLWVFRMG--EKKWEKIVCKD-TPPS---R-SGHRMIAL--KKHLVVFGGFHDNLREAKYYN  189 (265)
Q Consensus       119 v~GG~~~~~~~~~~~~~~~~~~yd~~--~~~W~~~~~~~-~p~~---~-~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~  189 (265)
                      |..-.           .+.+.+|+..  ++.++.+.... .|..   . ..+.+...  ++.+|+--..         .+
T Consensus       208 v~~e~-----------s~~v~v~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i~ispdg~~lyvsnr~---------~~  267 (345)
T PF10282_consen  208 VVNEL-----------SNTVSVFDYDPSDGSLTEIQTISTLPEGFTGENAPAEIAISPDGRFLYVSNRG---------SN  267 (345)
T ss_dssp             EEETT-----------TTEEEEEEEETTTTEEEEEEEEESCETTSCSSSSEEEEEE-TTSSEEEEEECT---------TT
T ss_pred             EecCC-----------CCcEEEEeecccCCceeEEEEeeeccccccccCCceeEEEecCCCEEEEEecc---------CC
Confidence            98664           3456666555  66666554322 1221   1 12222222  4577875422         46


Q ss_pred             ceEEEEc--CCCceEEecc
Q psy14331        190 DVHIFDL--ETYAWKKIEP  206 (265)
Q Consensus       190 ~v~~y~~--~~~~W~~~~~  206 (265)
                      .|..|++  .+.+.+.+..
T Consensus       268 sI~vf~~d~~~g~l~~~~~  286 (345)
T PF10282_consen  268 SISVFDLDPATGTLTLVQT  286 (345)
T ss_dssp             EEEEEEECTTTTTEEEEEE
T ss_pred             EEEEEEEecCCCceEEEEE
Confidence            7888887  3456655554

1.1.31 from EC, which hydrolyses 6-phosphogluconolactone to 6-phosphogluconate is opne of the enzymes in the pentose phosphate pathway. Two families of structurally dissimilar 6PGLs are known to exist: the Escherichia coli (strain K12) YbhE IPR022528 from INTERPRO [] and the Pseudomonas aeruginosa DevB IPR005900 from INTERPRO [] types. This entry contains bacterial 6-phosphogluconolactonases (6PGL) YbhE-type 3.1.1.31 from EC which hydrolyse 6-phosphogluconolactone to 6-phosphogluconate. The entry also contains the fungal muconate lactonizing enzyme carboxy-cis,cis-muconate cyclase 5.5.1.5 from EC and muconate cycloisomerase 5.5.1.1 from EC, which convert cis,cis-muconates to muconolactones and vice versa as part of the microbial beta-ketoadipate pathway. Structures have been reported for the E. coli 6-phosphogluconolactonase and Neurospora crassa muconate cycloisomerase. Structures of proteins in this family have revealed a 7-bladed beta-propeller fold [].; PDB: 3SCY_A 1L0Q_A 3HFQ_B 3FGB_A 1RI6_A 3U4Y_A 3BWS_A 1JOF_H.

>TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL

Probab=85.51  E-value=22  Score=30.25  Aligned_cols=61  Identities=15%  Similarity=0.075  Sum_probs=37.1

Q ss_pred             CCEEEEEcCcccCCCccccccCCceeEEEcCCC--cEEEEecCCCCCCCcCceEEEECCEEEEEcCccCCCCccccCCce
Q psy14331        114 KGQLWMFGGEFSSASESQFHHYKDLWVFRMGEK--KWEKIVCKDTPPSRSGHRMIALKKHLVVFGGFHDNLREAKYYNDV  191 (265)
Q Consensus       114 ~~~iyv~GG~~~~~~~~~~~~~~~~~~yd~~~~--~W~~~~~~~~p~~~~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~v  191 (265)
                      ++.||+...            ...+.++|..++  .|+.-. .   ..+...+.+..++.+|+.. .         ...+
T Consensus       279 ~~~vyv~~~------------~G~l~~~d~~tG~~~W~~~~-~---~~~~~ssp~i~g~~l~~~~-~---------~G~l  332 (377)
T TIGR03300       279 DNRLYVTDA------------DGVVVALDRRSGSELWKNDE-L---KYRQLTAPAVVGGYLVVGD-F---------EGYL  332 (377)
T ss_pred             CCEEEEECC------------CCeEEEEECCCCcEEEcccc-c---cCCccccCEEECCEEEEEe-C---------CCEE
Confidence            889998753            245889998776  476522 1   1222233345677787743 2         2468


Q ss_pred             EEEEcCCCc
Q psy14331        192 HIFDLETYA  200 (265)
Q Consensus       192 ~~y~~~~~~  200 (265)
                      +++|+.+.+
T Consensus       333 ~~~d~~tG~  341 (377)
T TIGR03300       333 HWLSREDGS  341 (377)
T ss_pred             EEEECCCCC
Confidence            889987754

Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ.

>TIGR02800 propeller_TolB tol-pal system beta propeller repeat protein TolB

Probab=85.26  E-value=23  Score=30.42  Aligned_cols=61  Identities=7%  Similarity=0.110  Sum_probs=36.4

Q ss_pred             CceeEEEcCCCcEEEEecCCCCCCCcCceE-EEECCEEEEEcCccCCCCccccCCceEEEEcCCCceEEecc
Q psy14331        136 KDLWVFRMGEKKWEKIVCKDTPPSRSGHRM-IALKKHLVVFGGFHDNLREAKYYNDVHIFDLETYAWKKIEP  206 (265)
Q Consensus       136 ~~~~~yd~~~~~W~~~~~~~~p~~~~~~~~-~~~~~~iyv~GG~~~~~~~~~~~~~v~~y~~~~~~W~~~~~  206 (265)
                      ..++.+|..+.+++.+....    ...... ..-+++.+++......      ...|+.+|+.+..++.+..
T Consensus       302 ~~iy~~d~~~~~~~~l~~~~----~~~~~~~~spdg~~i~~~~~~~~------~~~i~~~d~~~~~~~~l~~  363 (417)
T TIGR02800       302 PQIYMMDADGGEVRRLTFRG----GYNASPSWSPDGDLIAFVHREGG------GFNIAVMDLDGGGERVLTD  363 (417)
T ss_pred             ceEEEEECCCCCEEEeecCC----CCccCeEECCCCCEEEEEEccCC------ceEEEEEeCCCCCeEEccC
Confidence            47999999988887775332    111122 2224555555443221      2468999998877766654

The Tol-PAL system is required for bacterial outer membrane integrity. E. coli TolB is involved in the tonB-independent uptake of group A colicins (colicins A, E1, E2, E3 and K), and is necessary for the colicins to reach their respective targets after initial binding to the bacteria. It is also involved in uptake of filamentous DNA. Study of its structure suggest that the TolB protein might be involved in the recycling of peptidoglycan or in its covalent linking with lipoproteins. The Tol-Pal system is also implicated in pathogenesis of E. coli, Haemophilus ducreyi, Salmonella enterica and Vibrio cholerae, but the mechanism(s) is unclear.

>TIGR03866 PQQ_ABC_repeats PQQ-dependent catabolism-associated beta-propeller protein

Probab=83.54  E-value=21  Score=28.56  Aligned_cols=38  Identities=21%  Similarity=0.289  Sum_probs=19.2

Q ss_pred             HHHhhcccceEEEeccCCCCCCCceeeEEecCCCEEEEECc
Q psy14331         27 IEAEEKRKNKVIEKVVPEPTRRANFSFLAHPDKDQLILFGG   67 (265)
Q Consensus        27 ~~~~d~~~~~w~~~~~~~p~~r~~~~~~~~~~~~~lyv~GG   67 (265)
                      +..+|..+.+.........   ....+++.++++.+|+.++
T Consensus        55 v~~~d~~~~~~~~~~~~~~---~~~~~~~~~~g~~l~~~~~   92 (300)
T TIGR03866        55 IQVIDLATGEVIGTLPSGP---DPELFALHPNGKILYIANE   92 (300)
T ss_pred             EEEEECCCCcEEEeccCCC---CccEEEECCCCCEEEEEcC
Confidence            5566766655533222111   1233445556777777655

Members of this protein family consist of seven repeats each of the YVTN family beta-propeller repeat (see TIGR02276). Members occur invariably as part of a transport operon that is associated with PQQ-dependent catabolism of alcohols such as phenylethanol.

>PRK00178 tolB translocation protein TolB; Provisional

Probab=82.62  E-value=32  Score=29.89  Aligned_cols=61  Identities=3%  Similarity=0.089  Sum_probs=36.4

Q ss_pred             CceeEEEcCCCcEEEEecCCCCCCCcCceEEEEC-CEEEEEcCccCCCCccccCCceEEEEcCCCceEEecc
Q psy14331        136 KDLWVFRMGEKKWEKIVCKDTPPSRSGHRMIALK-KHLVVFGGFHDNLREAKYYNDVHIFDLETYAWKKIEP  206 (265)
Q Consensus       136 ~~~~~yd~~~~~W~~~~~~~~p~~~~~~~~~~~~-~~iyv~GG~~~~~~~~~~~~~v~~y~~~~~~W~~~~~  206 (265)
                      .+++.+|..++..+.+....   .........-+ +.|++.....+       ...++.+|+.+.+++++..
T Consensus       267 ~~Iy~~d~~~~~~~~lt~~~---~~~~~~~~spDg~~i~f~s~~~g-------~~~iy~~d~~~g~~~~lt~  328 (430)
T PRK00178        267 PEIYVMDLASRQLSRVTNHP---AIDTEPFWGKDGRTLYFTSDRGG-------KPQIYKVNVNGGRAERVTF  328 (430)
T ss_pred             ceEEEEECCCCCeEEcccCC---CCcCCeEECCCCCEEEEEECCCC-------CceEEEEECCCCCEEEeec
Confidence            57999999999887765321   11111122223 45555432211       2468999999988887764

>PRK11028 6-phosphogluconolactonase; Provisional

Probab=81.07  E-value=30  Score=28.67  Aligned_cols=69  Identities=16%  Similarity=0.106  Sum_probs=33.0

Q ss_pred             EEecCCCEEEEEcCcccCCCccccccCCceeEEEcC-CCcEEEEecCCCCCCCcCceEEEE-CCEEEEEcCccCCCCccc
Q psy14331        109 ALSADKGQLWMFGGEFSSASESQFHHYKDLWVFRMG-EKKWEKIVCKDTPPSRSGHRMIAL-KKHLVVFGGFHDNLREAK  186 (265)
Q Consensus       109 ~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~~~yd~~-~~~W~~~~~~~~p~~~~~~~~~~~-~~~iyv~GG~~~~~~~~~  186 (265)
                      .+...++.||+.+..           .+.+..|+.. +++++.+.....+ ..-.+.+..- ++.+|+..-.        
T Consensus        41 ~~spd~~~lyv~~~~-----------~~~i~~~~~~~~g~l~~~~~~~~~-~~p~~i~~~~~g~~l~v~~~~--------  100 (330)
T PRK11028         41 VISPDKRHLYVGVRP-----------EFRVLSYRIADDGALTFAAESPLP-GSPTHISTDHQGRFLFSASYN--------  100 (330)
T ss_pred             EECCCCCEEEEEECC-----------CCcEEEEEECCCCceEEeeeecCC-CCceEEEECCCCCEEEEEEcC--------
Confidence            344445567775442           2456677765 4567655433211 1111222222 3456665421        


Q ss_pred             cCCceEEEEcCC
Q psy14331        187 YYNDVHIFDLET  198 (265)
Q Consensus       187 ~~~~v~~y~~~~  198 (265)
                       .+.+..|++.+
T Consensus       101 -~~~v~v~~~~~  111 (330)
T PRK11028        101 -ANCVSVSPLDK  111 (330)
T ss_pred             -CCeEEEEEECC
Confidence             24577787754

>PF05096 Glu_cyclase_2: Glutamine cyclotransferase; InterPro: IPR007788 This family of enzymes 2

Probab=81.03  E-value=24  Score=28.47  Aligned_cols=102  Identities=20%  Similarity=0.223  Sum_probs=63.2

Q ss_pred             CCCEEEEECcEEeCCCceeeCCCcccCceEEEEe----eecCCCCCCCccccceEEEecCCCEEEEEcCcccCCCccccc
Q psy14331         58 DKDQLILFGGEFYDGQKFVFGSPKALDHLILMNL----FVSAPGAPPPRCSHQMVALSADKGQLWMFGGEFSSASESQFH  133 (265)
Q Consensus        58 ~~~~lyv~GG~~~~~~~~~~~~~~~~~~~~~yd~----w~~~~~~p~~r~~~~~~~~~~~~~~iyv~GG~~~~~~~~~~~  133 (265)
                      .++.||.--|.  -+          -+.+.++|+    -....++|..-++-..+.+   +++||.+-=.          
T Consensus        54 ~~g~LyESTG~--yG----------~S~l~~~d~~tg~~~~~~~l~~~~FgEGit~~---~d~l~qLTWk----------  108 (264)
T PF05096_consen   54 DDGTLYESTGL--YG----------QSSLRKVDLETGKVLQSVPLPPRYFGEGITIL---GDKLYQLTWK----------  108 (264)
T ss_dssp             ETTEEEEEECS--TT----------EEEEEEEETTTSSEEEEEE-TTT--EEEEEEE---TTEEEEEESS----------
T ss_pred             CCCEEEEeCCC--CC----------cEEEEEEECCCCcEEEEEECCccccceeEEEE---CCEEEEEEec----------
Confidence            47788887773  22          256778888    3334456655566666666   8999998432          


Q ss_pred             cCCceeEEEcCCCcEEEEecCCCCCCCcCceEEEECCEEEEEcCccCCCCccccCCceEEEEcCCC
Q psy14331        134 HYKDLWVFRMGEKKWEKIVCKDTPPSRSGHRMIALKKHLVVFGGFHDNLREAKYYNDVHIFDLETY  199 (265)
Q Consensus       134 ~~~~~~~yd~~~~~W~~~~~~~~p~~~~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~v~~y~~~~~  199 (265)
                       ....++||..+-  +.+....  .+..+-+++..++.+++--|          .+.++..||.+-
T Consensus       109 -~~~~f~yd~~tl--~~~~~~~--y~~EGWGLt~dg~~Li~SDG----------S~~L~~~dP~~f  159 (264)
T PF05096_consen  109 -EGTGFVYDPNTL--KKIGTFP--YPGEGWGLTSDGKRLIMSDG----------SSRLYFLDPETF  159 (264)
T ss_dssp             -SSEEEEEETTTT--EEEEEEE---SSS--EEEECSSCEEEE-S----------SSEEEEE-TTT-
T ss_pred             -CCeEEEEccccc--eEEEEEe--cCCcceEEEcCCCEEEEECC----------ccceEEECCccc
Confidence             467899998764  4554443  45566678877888888877          367888888763

3.2.5 from EC catalyse the cyclization of free L-glutamine and N-terminal glutaminyl residues in proteins to pyroglutamate (5-oxoproline) and pyroglutamyl residues respectively []. This family includes plant and bacterial enzymes and seems unrelated to the mammalian enzymes.; PDB: 3NOK_B 2FAW_A 2IWA_A 3NOM_A 3NOL_A 3MBR_X.

>PRK11028 6-phosphogluconolactonase; Provisional

Probab=80.16  E-value=33  Score=28.47  Aligned_cols=93  Identities=9%  Similarity=0.048  Sum_probs=44.9

Q ss_pred             HHHhhcc-cceEEEeccCCCCCCCceeeEEecCCCEEEEECcEEeCCCceeeCCCcccCceEEEEee------ecCCCCC
Q psy14331         27 IEAEEKR-KNKVIEKVVPEPTRRANFSFLAHPDKDQLILFGGEFYDGQKFVFGSPKALDHLILMNLF------VSAPGAP   99 (265)
Q Consensus        27 ~~~~d~~-~~~w~~~~~~~p~~r~~~~~~~~~~~~~lyv~GG~~~~~~~~~~~~~~~~~~~~~yd~w------~~~~~~p   99 (265)
                      +..|+.. ..++.. ....+.+...+.+++.++++.+|+..-.              .+.+..|++-      ......+
T Consensus        59 i~~~~~~~~g~l~~-~~~~~~~~~p~~i~~~~~g~~l~v~~~~--------------~~~v~v~~~~~~g~~~~~~~~~~  123 (330)
T PRK11028         59 VLSYRIADDGALTF-AAESPLPGSPTHISTDHQGRFLFSASYN--------------ANCVSVSPLDKDGIPVAPIQIIE  123 (330)
T ss_pred             EEEEEECCCCceEE-eeeecCCCCceEEEECCCCCEEEEEEcC--------------CCeEEEEEECCCCCCCCceeecc
Confidence            4445554 344543 2222222233456666677788886431              2455556551      1111122


Q ss_pred             CCccccceEEEecCCCEEEEEcCcccCCCccccccCCceeEEEcCCC
Q psy14331        100 PPRCSHQMVALSADKGQLWMFGGEFSSASESQFHHYKDLWVFRMGEK  146 (265)
Q Consensus       100 ~~r~~~~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~~~yd~~~~  146 (265)
                      .....|.++ +...++.+|+..-.           .+.+.+||+.+.
T Consensus       124 ~~~~~~~~~-~~p~g~~l~v~~~~-----------~~~v~v~d~~~~  158 (330)
T PRK11028        124 GLEGCHSAN-IDPDNRTLWVPCLK-----------EDRIRLFTLSDD  158 (330)
T ss_pred             CCCcccEeE-eCCCCCEEEEeeCC-----------CCEEEEEEECCC
Confidence            222335443 33345567765432           356889998763

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	265
2zwa_A	695	Leucine carboxyl methyltransferase 2; HET: SAH CIT	8e-26
2zwa_A	695	Leucine carboxyl methyltransferase 2; HET: SAH CIT	3e-23
2zwa_A	695	Leucine carboxyl methyltransferase 2; HET: SAH CIT	6e-17
2zwa_A	695	Leucine carboxyl methyltransferase 2; HET: SAH CIT	3e-11
2uvk_A	357	YJHT; unknown function, hypothetical protein, sial	1e-16
2uvk_A	357	YJHT; unknown function, hypothetical protein, sial	2e-14
2uvk_A	357	YJHT; unknown function, hypothetical protein, sial	1e-08
2uvk_A	357	YJHT; unknown function, hypothetical protein, sial	5e-06
3ii7_A	306	Kelch-like protein 7; protein-binding, kelch-repea	5e-15
3ii7_A	306	Kelch-like protein 7; protein-binding, kelch-repea	3e-12
3ii7_A	306	Kelch-like protein 7; protein-binding, kelch-repea	1e-09
3ii7_A	306	Kelch-like protein 7; protein-binding, kelch-repea	1e-08
3ii7_A	306	Kelch-like protein 7; protein-binding, kelch-repea	4e-05
2woz_A	318	Kelch repeat and BTB domain-containing protein 10;	4e-14
2woz_A	318	Kelch repeat and BTB domain-containing protein 10;	8e-12
2woz_A	318	Kelch repeat and BTB domain-containing protein 10;	1e-10
2woz_A	318	Kelch repeat and BTB domain-containing protein 10;	2e-06
1zgk_A	308	Kelch-like ECH-associated protein 1; beta-propelle	1e-13
1zgk_A	308	Kelch-like ECH-associated protein 1; beta-propelle	8e-12
2vpj_A	301	Kelch-like protein 12; adaptor protein, WNT signal	2e-13
2vpj_A	301	Kelch-like protein 12; adaptor protein, WNT signal	4e-10
2vpj_A	301	Kelch-like protein 12; adaptor protein, WNT signal	1e-09
2vpj_A	301	Kelch-like protein 12; adaptor protein, WNT signal	4e-08
2xn4_A	302	Kelch-like protein 2; structural protein, cytoskel	2e-12
2xn4_A	302	Kelch-like protein 2; structural protein, cytoskel	3e-10
2xn4_A	302	Kelch-like protein 2; structural protein, cytoskel	1e-09
2xn4_A	302	Kelch-like protein 2; structural protein, cytoskel	4e-08
4asc_A	315	Kelch repeat and BTB domain-containing protein 5;	4e-12
4asc_A	315	Kelch repeat and BTB domain-containing protein 5;	1e-10
4asc_A	315	Kelch repeat and BTB domain-containing protein 5;	4e-09
1k3i_A	656	Galactose oxidase precursor; blade beta propeller,	5e-04

>2zwa_A Leucine carboxyl methyltransferase 2; HET: SAH CIT; 1.70A {Saccharomyces cerevisiae} PDB: 2zw9_A* 2zzk_A* Length = 695

 Score =  105 bits (262), Expect = 8e-26
 Identities = 34/211 (16%), Positives = 71/211 (33%), Gaps = 23/211 (10%)

Query: 57  PDKDQLILFGGEFYDGQKFVFGSPKALDHLILMNLFVSAPGAPPPRCSHQMVALSADKGQ 116
              + +   GG        +       D + + N+ VS+   P  R  H    +S +  Q
Sbjct: 395 VAGNDVFYMGGSNPYRVNEILQLSIHYDKIDMKNIEVSSSEVPVARMCHTFTTISRN-NQ 453

Query: 117 LWMFGGEFSSASESQFHHYKDLWVFRMGEKKWEKIVCKDTPPSRSGHRMIALKKH-LVVF 175
           L + GG  +           D W+F M  ++W  I  K    +R  H   +L    +++ 
Sbjct: 454 LLLIGGRKAPHQ-----GLSDNWIFDMKTREWSMI--KSLSHTRFRHSACSLPDGNVLIL 506

Query: 176 GGFHDNLREAKYYNDVHIFDLETYAWKKIEPLGAGPAPR---SGCQMAATPDGKILISGG 232
           GG  +          + ++++    +K + P           +G +        I++ GG
Sbjct: 507 GGVTEG-------PAMLLYNVTEEIFKDVTPKDEFFQNSLVSAGLEFDPVSKQGIILGGG 559

Query: 233 YSKQSVKKDVDKGIVHTDTFLLTPDSKTLRS 263
           +  Q+   D          +     ++ +  
Sbjct: 560 FMDQTTVSDK----AIIFKYDAENATEPITV 586

>2zwa_A Leucine carboxyl methyltransferase 2; HET: SAH CIT; 1.70A {Saccharomyces cerevisiae} PDB: 2zw9_A* 2zzk_A* Length = 695

 Score = 97.9 bits (243), Expect = 3e-23
 Identities = 43/232 (18%), Positives = 75/232 (32%), Gaps = 41/232 (17%)

Query: 45  PTRRANFSFLAHPDKDQLILFGGEFYDGQKFVFGSPKALDHLILMNL----FVSAPGAPP 100
           P  R   +F      +QL+L GG             + L    + ++    +        
Sbjct: 437 PVARMCHTFTTISRNNQLLLIGGRK--------APHQGLSDNWIFDMKTREWSMIKSLSH 488

Query: 101 PRCSHQMVALSADKGQLWMFGGEFSSASESQFHHYKDLWVFRMGEKKWEKIVCKDT-PPS 159
            R  H   +L    G + + GG               + ++ + E+ ++ +  KD    +
Sbjct: 489 TRFRHSACSLP--DGNVLILGGVTEGP---------AMLLYNVTEEIFKDVTPKDEFFQN 537

Query: 160 RSGHRMIAL----KKHLVVFGGFHDNLREAKYYNDVHIFDLE----TYAWKKIEPLGAGP 211
                 +      K+ +++ GGF D        +   IF  +    T     I+ L    
Sbjct: 538 SLVSAGLEFDPVSKQGIILGGGFMDQTT---VSDKAIIFKYDAENATEPITVIKKLQHPL 594

Query: 212 APRSGCQMAATPDGKILISGGYSKQSVKKDVDKGIVHTDTFLLTPDSKTLRS 263
             R G Q+      K+LI GG S   +               L P S+TL S
Sbjct: 595 FQRYGSQIKYITPRKLLIVGGTSPSGLFDR------TNSIISLDPLSETLTS 640

>2zwa_A Leucine carboxyl methyltransferase 2; HET: SAH CIT; 1.70A {Saccharomyces cerevisiae} PDB: 2zw9_A* 2zzk_A* Length = 695

 Score = 79.4 bits (195), Expect = 6e-17
 Identities = 25/180 (13%), Positives = 48/180 (26%), Gaps = 10/180 (5%)

Query: 58  DKDQLILFGGEFYDGQKFVFGSPKALDHLILMNLFVSAPGAPPPRCSHQMVALSADKGQL 117
               +++ GG        ++     +   I  ++            S  +      K  +
Sbjct: 499 PDGNVLILGGVTEGPAMLLY----NVTEEIFKDVTPKDEFFQNSLVSAGLEFDPVSKQGI 554

Query: 118 WMFGGEFSSASESQFHHYKDLWVFRMGEKKWEKIVCKDTPPSRSGHRMIALKKH-LVVFG 176
            + GG     + S              E        +     R G ++  +    L++ G
Sbjct: 555 ILGGGFMDQTTVSDKAIIFKYDAENATEPITVIKKLQHPLFQRYGSQIKYITPRKLLIVG 614

Query: 177 GFHDNLREAKYYNDVHIFDLETYAWKKIEPLGAGPAPRS----GCQMAATPDGKILISGG 232
           G   +       N +   D  +     I          S    G  + +T  G I I GG
Sbjct: 615 GTSPS-GLFDRTNSIISLDPLSETLTSIPISRRIWEDHSLMLAGFSLVSTSMGTIHIIGG 673

>2zwa_A Leucine carboxyl methyltransferase 2; HET: SAH CIT; 1.70A {Saccharomyces cerevisiae} PDB: 2zw9_A* 2zzk_A* Length = 695

 Score = 62.5 bits (151), Expect = 3e-11
 Identities = 15/156 (9%), Positives = 40/156 (25%), Gaps = 17/156 (10%)

Query: 109 ALSADKGQLWMFGGEFSSASESQFHHYKDLWVFRMGEKKWEKIVCKDTPPSRSGHRMIAL 168
            L      L         A    F   + +    +   +  +++  + P +R    +   
Sbjct: 337 HLFCHHYVLCHATNYKEFAFTQGFLFDRSISEINLTVDEDYQLLECECPINRKFGDVDVA 396

Query: 169 KKHLVVFGGFHDNLREAKYYNDVHIFDLETYAW---KKIEPLGAGPAPRSGCQMAA-TPD 224
              +   GG +         N++    +                 P  R        + +
Sbjct: 397 GNDVFYMGGSNPY-----RVNEILQLSIHYDKIDMKNIEVSSSEVPVARMCHTFTTISRN 451

Query: 225 GKILISGGYSKQSVKKDVDKGIVHTDTFLLTPDSKT 260
            ++L+ GG                +D ++    ++ 
Sbjct: 452 NQLLLIGGRK--------APHQGLSDNWIFDMKTRE 479

>2uvk_A YJHT; unknown function, hypothetical protein, sialic acid metabolism, kelch repeat, beta-propeller; HET: MSE; 1.50A {Escherichia coli} Length = 357

 Score = 77.7 bits (191), Expect = 1e-16
 Identities = 29/151 (19%), Positives = 55/151 (36%), Gaps = 18/151 (11%)

Query: 96  PGAPPPRCSHQMVALSADKGQLWMFGGEFSSASESQFHHYKDLWVFRMGEKKWEKIVCKD 155
           P  P P  S            +++  G   +     ++   D       +KKW  +    
Sbjct: 4   PETPVPFKSGTGAID---NDTVYIGLGSAGT----AWYKL-DTQAK---DKKWTAL--AA 50

Query: 156 TPPS-RSGHRMIALKKHLVVFGGF-HDNLREAKYYNDVHIFDLETYAWKKIEPLGAGPAP 213
            P   R       +  +L VFGG   ++    + +NDVH ++ +T +W K+      P  
Sbjct: 51  FPGGPRDQATSAFIDGNLYVFGGIGKNSEGLTQVFNDVHKYNPKTNSWVKLMSH--APMG 108

Query: 214 RSGCQMAATPDGKILISGGYSKQSVKKDVDK 244
            +G       +GK  ++GG ++       + 
Sbjct: 109 MAGHVTFV-HNGKAYVTGGVNQNIFNGYFED 138

>2uvk_A YJHT; unknown function, hypothetical protein, sialic acid metabolism, kelch repeat, beta-propeller; HET: MSE; 1.50A {Escherichia coli} Length = 357

 Score = 71.5 bits (175), Expect = 2e-14
 Identities = 29/177 (16%), Positives = 48/177 (27%), Gaps = 35/177 (19%)

Query: 100 PPRCSHQMVALSADKGQLWMFGGEFSSASESQFHHYKDLWVFRMGEK--KWEKIVCKDTP 157
                  +V       + W+  GE      +       ++         KW K+    +P
Sbjct: 189 YGTAGAAVVNK---GDKTWLINGEAKPGLRT-----DAVFELDFTGNNLKWNKLAPVSSP 240

Query: 158 PSRSGHRMIALKKHLVVFG-----GFHDNLREAKYYND--------VHIFDLETYAWKKI 204
              +G         L+  G     G  +N +  K Y            I       W K 
Sbjct: 241 DGVAGGFAGISNDSLIFAGGAGFKGSRENYQNGKNYAHEGLKKSYSTDIHLWHNGKWDKS 300

Query: 205 EPLGAGPAPRSGCQMAATPDGKILISGGYSKQSVKKDVDKGIVHTDTFLLTPDSKTL 261
             L      R+        +  +LI GG +          G   TD+ L+T     +
Sbjct: 301 GEL---SQGRAYGVSLPW-NNSLLIIGGET--------AGGKAVTDSVLITVKDNKV 345

>2uvk_A YJHT; unknown function, hypothetical protein, sialic acid metabolism, kelch repeat, beta-propeller; HET: MSE; 1.50A {Escherichia coli} Length = 357

 Score = 53.8 bits (129), Expect = 1e-08
 Identities = 22/186 (11%), Positives = 46/186 (24%), Gaps = 39/186 (20%)

Query: 95  APGAPPPRCSHQMVALSADKGQLWMFGG----------------------------EFSS 126
              AP     H         G+ ++ GG                             +  
Sbjct: 102 MSHAPMGMAGHVTFVH---NGKAYVTGGVNQNIFNGYFEDLNEAGKDSTAIDKINAHYFD 158

Query: 127 ASESQFHHYKDLWVFRMGEKKWEKIVCKDTP-PSRSGHRMIALKKHLVVFGGFHDNLREA 185
                +   K L  F    ++W      ++P    +G  ++       +  G        
Sbjct: 159 KKAEDYFFNKFLLSFDPSTQQWSYA--GESPWYGTAGAAVVNKGDKTWLINGEAKP---G 213

Query: 186 KYYNDVHIFDLETYAWKKIEPLGAGPAPRSGCQM-AATPDGKILISGGYSKQSVKKDVDK 244
              + V   D      K    L    +P       A   +  ++ +GG   +  +++   
Sbjct: 214 LRTDAVFELDFTGNNLKW-NKLAPVSSPDGVAGGFAGISNDSLIFAGGAGFKGSRENYQN 272

Query: 245 GIVHTD 250
           G  +  
Sbjct: 273 GKNYAH 278

>2uvk_A YJHT; unknown function, hypothetical protein, sialic acid metabolism, kelch repeat, beta-propeller; HET: MSE; 1.50A {Escherichia coli} Length = 357

 Score = 46.1 bits (109), Expect = 5e-06
 Identities = 26/173 (15%), Positives = 47/173 (27%), Gaps = 22/173 (12%)

Query: 46  TRRANFSFLAHPDKDQLILFGGEFYDGQKFVFGSPKALDHLILMNLFVSAPGAPPPRCSH 105
              A  + +   DK    L  GE   G +    +   LD       +        P    
Sbjct: 189 YGTAGAAVVNKGDK--TWLINGEAKPGLRTD--AVFELDFTGNNLKWNKLAPVSSPDGVA 244

Query: 106 QMVALSADKGQLWMFGGEFSSASESQF--------HHYKDLW---VFRMGEKKWEKIVCK 154
              A  ++   L   GG     S   +           K  +   +      KW+K    
Sbjct: 245 GGFAGISN-DSLIFAGGAGFKGSRENYQNGKNYAHEGLKKSYSTDIHLWHNGKWDKS--G 301

Query: 155 DTPPSRSGHRMIALKKHLVVFGGFHDNLREAKYYNDVHIFDLETYAWKKIEPL 207
           +    R+    +     L++ GG        K   D  +  ++      ++ L
Sbjct: 302 ELSQGRAYGVSLPWNNSLLIIGGETAG---GKAVTDSVLITVKD-NKVTVQNL 350

>3ii7_A Kelch-like protein 7; protein-binding, kelch-repeat, structural genomics, structur genomics consortium, SGC, kelch repeat, nucleus, protein BI; 1.63A {Homo sapiens} Length = 306

 Score = 72.4 bits (178), Expect = 5e-15
 Identities = 28/175 (16%), Positives = 56/175 (32%), Gaps = 33/175 (18%)

Query: 99  PPPRCSHQMVALSADKGQLWMFGGEFSSASESQ-------FHHYKDLWVFR--MGEKKWE 149
              RCSH MV      G +++ GG   +    +       +    + W     M E    
Sbjct: 137 LTQRCSHGMVEA---NGLIYVCGGSLGNNVSGRVLNSCEVYDPATETWTELCPMIEA--- 190

Query: 150 KIVCKDTPPSRSGHRMIALKKHLVVFGGFHDNLREAKYYNDVHIFDLETYAWKKIEPLGA 209
                     R  H ++ +K  +   GG +         ++V  +D++   WK + P+  
Sbjct: 191 ----------RKNHGLVFVKDKIFAVGGQNGL----GGLDNVEYYDIKLNEWKMVSPM-- 234

Query: 210 GPAPRSGCQMAATPDGKILISGGYSKQSVKKDVDKGIVHTDTFLLTPDSKTLRSC 264
            P      + AA     + +  G+        + +    TD ++     +     
Sbjct: 235 -PWKGVTVKCAAV-GSIVYVLAGFQGVGRLGHILEYNTETDKWVANSKVRAFPVT 287

>3ii7_A Kelch-like protein 7; protein-binding, kelch-repeat, structural genomics, structur genomics consortium, SGC, kelch repeat, nucleus, protein BI; 1.63A {Homo sapiens} Length = 306

 Score = 64.3 bits (157), Expect = 3e-12
 Identities = 28/142 (19%), Positives = 45/142 (31%), Gaps = 14/142 (9%)

Query: 101 PRCSHQMVALSADKGQLWMFGGEFSSASESQFHHYKDLWVFRMGEKKWEKIVCKDTPPSR 160
           PR S    A    +G+++  GG     SE           +    + W           R
Sbjct: 91  PRDSLAACAA---EGKIYTSGG-----SEVGNSALYLFECYDTRTESWHTK--PSMLTQR 140

Query: 161 SGHRMIALKKHLVVFGGFHDNLREAKYYNDVHIFDLETYAWKKIEPLGAGPAPRSGCQMA 220
             H M+     + V GG   N    +  N   ++D  T  W ++ P+      R    + 
Sbjct: 141 CSHGMVEANGLIYVCGGSLGNNVSGRVLNSCEVYDPATETWTELCPM---IEARKNHGLV 197

Query: 221 ATPDGKILISGGYSKQSVKKDV 242
                KI   GG +      +V
Sbjct: 198 FV-KDKIFAVGGQNGLGGLDNV 218

>3ii7_A Kelch-like protein 7; protein-binding, kelch-repeat, structural genomics, structur genomics consortium, SGC, kelch repeat, nucleus, protein BI; 1.63A {Homo sapiens} Length = 306

 Score = 56.6 bits (137), Expect = 1e-09
 Identities = 22/133 (16%), Positives = 37/133 (27%), Gaps = 28/133 (21%)

Query: 101 PRCSHQMVALSADKGQLWMFGGEFSSASESQFHHYKDLWVFRMGEKKWEKIVCKDTPPSR 160
           PR             ++ +FGG    +             F   +  W  I  +     R
Sbjct: 6   PRRK-------KHDYRIALFGGSQPQSCR----------YFNPKDYSWTDI--RCPFEKR 46

Query: 161 SGHRMIALKKHLVVFGGFHDNLREAKYYNDVHIFDLETYAWKKIEPLGAGPAPRSGCQMA 220
                +     + + GG             +  +++   +W         P PR      
Sbjct: 47  RDAACVFWDNVVYILGGSQLF-----PIKRMDCYNVVKDSWYSKLGP---PTPRDSLAAC 98

Query: 221 ATPDGKILISGGY 233
           A  +GKI  SGG 
Sbjct: 99  AA-EGKIYTSGGS 110

>3ii7_A Kelch-like protein 7; protein-binding, kelch-repeat, structural genomics, structur genomics consortium, SGC, kelch repeat, nucleus, protein BI; 1.63A {Homo sapiens} Length = 306

 Score = 53.5 bits (129), Expect = 1e-08
 Identities = 17/138 (12%), Positives = 48/138 (34%), Gaps = 23/138 (16%)

Query: 101 PRCSHQMVALSADKGQLWMFGGEFSSASESQFHHYKDLWVFRMGEKKWEKIVCKDTPPSR 160
            R +H +V +   K +++  GG+      +      ++  + +   +W+ +     P   
Sbjct: 190 ARKNHGLVFV---KDKIFAVGGQ------NGLGGLDNVEYYDIKLNEWKMVS--PMPWKG 238

Query: 161 SGHRMIALKKHLVVFGGFHDNLREAKYYNDVHIFDLETYAWKKIEPLGAGPAPRSGCQMA 220
              +  A+   + V  GF            +  ++ ET  W     +    A      + 
Sbjct: 239 VTVKCAAVGSIVYVLAGFQGV----GRLGHILEYNTETDKWVANSKV---RAFPVTSCLI 291

Query: 221 ATPDGKILISGGYSKQSV 238
                 ++ + G +++++
Sbjct: 292 C-----VVDTCGANEETL 304

>3ii7_A Kelch-like protein 7; protein-binding, kelch-repeat, structural genomics, structur genomics consortium, SGC, kelch repeat, nucleus, protein BI; 1.63A {Homo sapiens} Length = 306

 Score = 43.1 bits (102), Expect = 4e-05
 Identities = 14/76 (18%), Positives = 21/76 (27%), Gaps = 12/76 (15%)

Query: 164 RMIALKKHLVVFGGFHDNLREAKYYNDVHIFDLETYAWKKIEPLGAGPAPRSGCQMAATP 223
           R       + +FGG                F+ + Y+W  I         R         
Sbjct: 7   RRKKHDYRIALFGG--------SQPQSCRYFNPKDYSWTDIRCP---FEKRRDA-ACVFW 54

Query: 224 DGKILISGGYSKQSVK 239
           D  + I GG     +K
Sbjct: 55  DNVVYILGGSQLFPIK 70

>2woz_A Kelch repeat and BTB domain-containing protein 10; protein binding, invasion and metastasis, UBL conjugation pathway, UBL protein folding; 2.00A {Rattus norvegicus} Length = 318

 Score = 69.7 bits (171), Expect = 4e-14
 Identities = 28/165 (16%), Positives = 57/165 (34%), Gaps = 24/165 (14%)

Query: 99  PPPRCSHQMVALSADKGQLWMFGGEFSSASESQFHHYKDLWVFRMGEKKWEKIVCKDTPP 158
           P     H +++     G ++  GG+              ++++   +  W+ +      P
Sbjct: 146 PIKVYGHNVISH---NGMIYCLGGKTDDKK-----CTNRVFIYNPKKGDWKDL-----AP 192

Query: 159 ---SRSGHRMIALKKHLVVFGGFHDNLREAKYYNDVHIFDLETYAWKKIEPLGAGPAPRS 215
               RS   +   K  +V+ GG  ++         V  FDL+T  W+ +      P  RS
Sbjct: 193 MKTPRSMFGVAIHKGKIVIAGGVTED----GLSASVEAFDLKTNKWEVMTEF---PQERS 245

Query: 216 GCQMAATPDGKILISGGYSKQSVKKDVDKGIVHTDTFLLTPDSKT 260
              + +   G +   GG++   ++          D +    D K 
Sbjct: 246 SISLVSL-AGSLYAIGGFAMIQLESKEFAPTEVNDIWKYEDDKKE 289

>2woz_A Kelch repeat and BTB domain-containing protein 10; protein binding, invasion and metastasis, UBL conjugation pathway, UBL protein folding; 2.00A {Rattus norvegicus} Length = 318

 Score = 63.1 bits (154), Expect = 8e-12
 Identities = 23/143 (16%), Positives = 49/143 (34%), Gaps = 11/143 (7%)

Query: 92  FVSAPGAPPPRCSHQMVALSADKGQLWMFGGEFSSASESQFHHYKDLWVFRMGEKKWEKI 151
           +++A     PR    +V     + Q+++ GG +              +       +W  +
Sbjct: 37  YLTALAEQIPRNHSSIVTQ---QNQVYVVGGLYVDEENKDQPLQSYFFQLDNVSSEWVGL 93

Query: 152 VCKDTPPSRSGHRMIALKKHLVVFGGFHDNLREAKYYNDVHIFDLETYAWKKIEPLGAGP 211
                P +R    +  +   + V  G   +L+     + V  +D     W +++ L   P
Sbjct: 94  P--PLPSARCLFGLGEVDDKIYVVAGK--DLQTEASLDSVLCYDPVAAKWSEVKNL---P 146

Query: 212 APRSGCQMAATPDGKILISGGYS 234
               G     + +G I   GG +
Sbjct: 147 IKVYGH-NVISHNGMIYCLGGKT 168

>2woz_A Kelch repeat and BTB domain-containing protein 10; protein binding, invasion and metastasis, UBL conjugation pathway, UBL protein folding; 2.00A {Rattus norvegicus} Length = 318

 Score = 60.1 bits (146), Expect = 1e-10
 Identities = 45/215 (20%), Positives = 90/215 (41%), Gaps = 23/215 (10%)

Query: 33  RKNKVIEKVVPEPTRRANFSFLAHPDKDQLILFGGEFYDGQKF---VFGSPKALDHLILM 89
            +N+     + E   R + S +    ++Q+ + GG + D +     +      LD++   
Sbjct: 32  MENECYLTALAEQIPRNHSSIVTQ--QNQVYVVGGLYVDEENKDQPLQSYFFQLDNVS-- 87

Query: 90  NLFVSAPGAPPPRCSHQMVALSADKGQLWMFGGEFSSASESQFHHYKDLWVFRMGEKKWE 149
           + +V  P  P  RC   +  +     ++++  G     +E+       +  +     KW 
Sbjct: 88  SEWVGLPPLPSARCLFGLGEV---DDKIYVVAG-KDLQTEA---SLDSVLCYDPVAAKWS 140

Query: 150 KIVCKDTPPSRSGHRMIALKKHLVVFGGFHDNLREAKYYNDVHIFDLETYAWKKIEPLGA 209
           ++  K+ P    GH +I+    +   GG  D+    K  N V I++ +   WK + P+  
Sbjct: 141 EV--KNLPIKVYGHNVISHNGMIYCLGGKTDD---KKCTNRVFIYNPKKGDWKDLAPM-- 193

Query: 210 GPAPRSGCQMAATPDGKILISGGYSKQSVKKDVDK 244
              PRS   +A    GKI+I+GG ++  +   V+ 
Sbjct: 194 -KTPRSMFGVAIH-KGKIVIAGGVTEDGLSASVEA 226

>2woz_A Kelch repeat and BTB domain-containing protein 10; protein binding, invasion and metastasis, UBL conjugation pathway, UBL protein folding; 2.00A {Rattus norvegicus} Length = 318

 Score = 47.3 bits (113), Expect = 2e-06
 Identities = 27/127 (21%), Positives = 45/127 (35%), Gaps = 12/127 (9%)

Query: 101 PRCSHQMVALSADKGQLWMFGGEFSSASESQFHHYKDLWVFRMGEKKWEKIVCKDTPPSR 160
           PR    +      KG++ + GG               +  F +   KWE +   + P  R
Sbjct: 196 PRSMFGVAIH---KGKIVIAGGVTED------GLSASVEAFDLKTNKWEVMT--EFPQER 244

Query: 161 SGHRMIALKKHLVVFGGFHDNLREAKYYNDVHIFDLETYAWKKIEPLGAGPAPRSGCQMA 220
           S   +++L   L   GGF     E+K +    + D+  Y   K E  G     R     A
Sbjct: 245 SSISLVSLAGSLYAIGGFAMIQLESKEFAPTEVNDIWKYEDDKKEWAGMLKEIRYAS-GA 303

Query: 221 ATPDGKI 227
           +    ++
Sbjct: 304 SCLATRL 310

>1zgk_A Kelch-like ECH-associated protein 1; beta-propeller, kelch repeat motif, protein binding; HET: MSE; 1.35A {Homo sapiens} SCOP: b.68.11.1 PDB: 2flu_X 1u6d_X 1x2j_A 1x2r_A 2dyh_A 2z32_A 3ade_A Length = 308

 Score = 68.5 bits (168), Expect = 1e-13
 Identities = 34/167 (20%), Positives = 53/167 (31%), Gaps = 19/167 (11%)

Query: 99  PPPRCSHQMVALSADKGQLWMFGGEFSSASESQFHHYKDLWVFRMGEKKWEKIVCKDTPP 158
              R    +  L      L+  GG F   +            +     +W  I       
Sbjct: 156 LTRRIGVGVAVL---NRLLYAVGG-FDGTN-----RLNSAECYYPERNEWRMI--TAMNT 204

Query: 159 SRSGHRMIALKKHLVVFGGFHDNLREAKYYNDVHIFDLETYAWKKIEPLGAGPAPRSGCQ 218
            RSG  +  L   +   GG+          N V  +D+ET  W  + P+      RS   
Sbjct: 205 IRSGAGVCVLHNCIYAAGGYDGQ----DQLNSVERYDVETETWTFVAPM---KHRRSALG 257

Query: 219 MAATPDGKILISGGYSKQSVKKDVDKGIVHTDTFLLTPDSKTLRSCL 265
                 G+I + GGY   +    V+     TDT+       + RS +
Sbjct: 258 -ITVHQGRIYVLGGYDGHTFLDSVECYDPDTDTWSEVTRMTSGRSGV 303

>1zgk_A Kelch-like ECH-associated protein 1; beta-propeller, kelch repeat motif, protein binding; HET: MSE; 1.35A {Homo sapiens} SCOP: b.68.11.1 PDB: 2flu_X 1u6d_X 1x2j_A 1x2r_A 2dyh_A 2z32_A 3ade_A Length = 308

 Score = 63.1 bits (154), Expect = 8e-12
 Identities = 31/165 (18%), Positives = 52/165 (31%), Gaps = 17/165 (10%)

Query: 101 PRCSHQMVALSADKGQLWMFGGEFSSASESQFHHYKDLWVFRMGEKKWEKIVCKDTPPSR 160
           PR SH           ++  GG F  +          L  +      W ++   D    R
Sbjct: 15  PRGSHAPKV----GRLIYTAGGYFRQSLSY-------LEAYNPSNGTWLRL--ADLQVPR 61

Query: 161 SGHRMIALKKHLVVFGGFHDNLREAKYYNDVHIFDLETYAWKKIEPLGAGPAPRSGCQMA 220
           SG     +   L   GG +++       + +  ++  T  W    P+     PR+   + 
Sbjct: 62  SGLAGCVVGGLLYAVGGRNNSPDGNTDSSALDCYNPMTNQWSPCAPM---SVPRNRIGVG 118

Query: 221 ATPDGKILISGGYSKQSVKKDVDKGIVHTDTFLLTPDSKTLRSCL 265
              DG I   GG         V++     D + L     T R  +
Sbjct: 119 VI-DGHIYAVGGSHGCIHHNSVERYEPERDEWHLVAPMLTRRIGV 162

>2vpj_A Kelch-like protein 12; adaptor protein, WNT signaling pathway, protein-binding, UBI degradation, UBL conjugation pathway, CUL3, kelch repeat; 1.85A {Homo sapiens} Length = 301

 Score = 67.7 bits (166), Expect = 2e-13
 Identities = 26/144 (18%), Positives = 45/144 (31%), Gaps = 19/144 (13%)

Query: 99  PPPRCSHQMVALSADKGQLWMFGGEFSSASESQFHHYKDLWVFRMGEKKWEKIVCKDTPP 158
              R    +V      G ++  GG       +    Y D          W  +       
Sbjct: 147 QTAREGAGLVVA---SGVIYCLGGYDGLNILNSVEKY-DP-----HTGHWTNV--TPMAT 195

Query: 159 SRSGHRMIALKKHLVVFGGFHDNLREAKYYNDVHIFDLETYAWKKIEPLGAGPAPRSGCQ 218
            RSG  +  L  H+ V GGF        + + V  +++ T +W  +  +     PR    
Sbjct: 196 KRSGAGVALLNDHIYVVGGFDGT----AHLSSVEAYNIRTDSWTTVTSM---TTPRCYVG 248

Query: 219 MAATPDGKILISGGYSKQSVKKDV 242
                 G++    GY   S+   +
Sbjct: 249 ATVL-RGRLYAIAGYDGNSLLSSI 271

>2vpj_A Kelch-like protein 12; adaptor protein, WNT signaling pathway, protein-binding, UBI degradation, UBL conjugation pathway, CUL3, kelch repeat; 1.85A {Homo sapiens} Length = 301

 Score = 58.1 bits (141), Expect = 4e-10
 Identities = 25/145 (17%), Positives = 42/145 (28%), Gaps = 22/145 (15%)

Query: 101 PRCSHQMVALSADKGQLWMFGGEFSSASESQFHHYKDLWVFRMGEKKWEKIVCKDTPPSR 160
           PR       L A+   L + GG       SQ      +  +    ++W  +        R
Sbjct: 5   PRTRA---RLGAN-EVLLVVGG-----FGSQQSPIDVVEKYDPKTQEWSFL--PSITRKR 53

Query: 161 SGHRMIALKKHLVVFGGFHDNLREAKYYNDVHIFDL---ETYAWKKIEPLGAGPAPRSGC 217
                ++L   + V GG+          + V   D    E   W  + P+      R   
Sbjct: 54  RYVASVSLHDRIYVIGGYDGR----SRLSSVECLDYTADEDGVWYSVAPM---NVRRGLA 106

Query: 218 QMAATPDGKILISGGYSKQSVKKDV 242
                    I +SGG+        +
Sbjct: 107 GATTL-GDMIYVSGGFDGSRRHTSM 130

>2vpj_A Kelch-like protein 12; adaptor protein, WNT signaling pathway, protein-binding, UBI degradation, UBL conjugation pathway, CUL3, kelch repeat; 1.85A {Homo sapiens} Length = 301

 Score = 56.5 bits (137), Expect = 1e-09
 Identities = 29/164 (17%), Positives = 54/164 (32%), Gaps = 19/164 (11%)

Query: 101 PRCSHQMVALSADKGQLWMFGGEFSSASESQFHHYKDLWVFRMGEKKWEKIVCKDTPPSR 160
            R       L      +++ GG   S        +  +  +     +W  +   D   +R
Sbjct: 102 RRGLAGATTL---GDMIYVSGGFDGS------RRHTSMERYDPNIDQWSML--GDMQTAR 150

Query: 161 SGHRMIALKKHLVVFGGFHDNLREAKYYNDVHIFDLETYAWKKIEPLGAGPAPRSGCQMA 220
            G  ++     +   GG+          N V  +D  T  W  + P+      RSG  +A
Sbjct: 151 EGAGLVVASGVIYCLGGYDGL----NILNSVEKYDPHTGHWTNVTPM---ATKRSGAGVA 203

Query: 221 ATPDGKILISGGYSKQSVKKDVDKGIVHTDTFLLTPDSKTLRSC 264
              +  I + GG+   +    V+   + TD++       T R  
Sbjct: 204 LL-NDHIYVVGGFDGTAHLSSVEAYNIRTDSWTTVTSMTTPRCY 246

>2vpj_A Kelch-like protein 12; adaptor protein, WNT signaling pathway, protein-binding, UBI degradation, UBL conjugation pathway, CUL3, kelch repeat; 1.85A {Homo sapiens} Length = 301

 Score = 52.3 bits (126), Expect = 4e-08
 Identities = 14/126 (11%), Positives = 33/126 (26%), Gaps = 18/126 (14%)

Query: 99  PPPRCSHQMVALSADKGQLWMFGGEFSSASESQFHHYKDLWVFRMGEKKWEKIVCKDTPP 158
              R    +  L      +++ GG           H   +  + +    W  +       
Sbjct: 194 ATKRSGAGVALL---NDHIYVVGGF------DGTAHLSSVEAYNIRTDSWTTVT--SMTT 242

Query: 159 SRSGHRMIALKKHLVVFGGFHDNLREAKYYNDVHIFDLETYAWKKIEPLGAGPAPRSGCQ 218
            R       L+  L    G+  N       + +  +D    +W+ +  +      R    
Sbjct: 243 PRCYVGATVLRGRLYAIAGYDGN----SLLSSIECYDPIIDSWEVVTSM---GTQRCDAG 295

Query: 219 MAATPD 224
           +    +
Sbjct: 296 VCVLRE 301

>2xn4_A Kelch-like protein 2; structural protein, cytoskeleton; 1.99A {Homo sapiens} Length = 302

 Score = 65.0 bits (159), Expect = 2e-12
 Identities = 28/142 (19%), Positives = 47/142 (33%), Gaps = 17/142 (11%)

Query: 101 PRCSHQMVALSADKGQLWMFGGEFSSASESQFHHYKDLWVFRMGEKKWEKIVCKDTPPSR 160
            R S  +  +    G L+  GG +  AS         +  +     +W  I   +    R
Sbjct: 145 RRSSVGVGVV---GGLLYAVGG-YDVASR---QCLSTVECYNATTNEWTYI--AEMSTRR 195

Query: 161 SGHRMIALKKHLVVFGGFHDNLREAKYYNDVHIFDLETYAWKKIEPLGAGPAPRSGCQMA 220
           SG  +  L   L   GG             V ++D  T AW+++  +      R    + 
Sbjct: 196 SGAGVGVLNNLLYAVGGHDGP----LVRKSVEVYDPTTNAWRQVADM---NMCRRNAGVC 248

Query: 221 ATPDGKILISGGYSKQSVKKDV 242
           A  +G + + GG         V
Sbjct: 249 AV-NGLLYVVGGDDGSCNLASV 269

>2xn4_A Kelch-like protein 2; structural protein, cytoskeleton; 1.99A {Homo sapiens} Length = 302

 Score = 58.4 bits (142), Expect = 3e-10
 Identities = 25/147 (17%), Positives = 51/147 (34%), Gaps = 17/147 (11%)

Query: 119 MFGGEFSSASESQFHHYKDLWVFRMGEKKWEKIVCKDTPPSRSGHRMIALKKHLVVFGGF 178
           + GG+   A  S       +  +   E++W +    + P  R    M+ +   +   GGF
Sbjct: 20  VVGGQAPKAIRS-------VECYDFKEERWHQ--VAELPSRRCRAGMVYMAGLVFAVGGF 70

Query: 179 HDNLREAKYYNDVHIFDLETYAWKKIEPLGAGPAPRSGCQMAATPDGKILISGGYSKQSV 238
           + +         V  +D     W  +  +      RS    A   +G +   GG+   + 
Sbjct: 71  NGS----LRVRTVDSYDPVKDQWTSVANM---RDRRSTLGAAVL-NGLLYAVGGFDGSTG 122

Query: 239 KKDVDKGIVHTDTFLLTPDSKTLRSCL 265
              V+   + ++ +       T RS +
Sbjct: 123 LSSVEAYNIKSNEWFHVAPMNTRRSSV 149

>2xn4_A Kelch-like protein 2; structural protein, cytoskeleton; 1.99A {Homo sapiens} Length = 302

 Score = 56.9 bits (138), Expect = 1e-09
 Identities = 27/147 (18%), Positives = 48/147 (32%), Gaps = 23/147 (15%)

Query: 101 PRCSHQMVALSADKGQLWMFGGEFSSASESQFHHYKDLWVFRMGEKKWEKIVCKDTPP-- 158
            R +     L    G L+  GG   S           +  + +   +W  +      P  
Sbjct: 98  RRSTLGAAVL---NGLLYAVGGFDGS------TGLSSVEAYNIKSNEWFHV-----APMN 143

Query: 159 -SRSGHRMIALKKHLVVFGGFHDNLREAKYYNDVHIFDLETYAWKKIEPLGAGPAPRSGC 217
             RS   +  +   L   GG+    R+    + V  ++  T  W  I  +      RSG 
Sbjct: 144 TRRSSVGVGVVGGLLYAVGGYDVASRQ--CLSTVECYNATTNEWTYIAEM---STRRSGA 198

Query: 218 QMAATPDGKILISGGYSKQSVKKDVDK 244
            +    +  +   GG+    V+K V+ 
Sbjct: 199 GVGVL-NNLLYAVGGHDGPLVRKSVEV 224

>2xn4_A Kelch-like protein 2; structural protein, cytoskeleton; 1.99A {Homo sapiens} Length = 302

 Score = 52.3 bits (126), Expect = 4e-08
 Identities = 21/129 (16%), Positives = 35/129 (27%), Gaps = 18/129 (13%)

Query: 99  PPPRCSHQMVALSADKGQLWMFGGEFSSASESQFHHYKDLWVFRMGEKKWEKIVCKDTPP 158
              R    +  L      L+  GG             K + V+      W ++   D   
Sbjct: 192 STRRSGAGVGVL---NNLLYAVGGHDGPL------VRKSVEVYDPTTNAWRQVA--DMNM 240

Query: 159 SRSGHRMIALKKHLVVFGGFHDNLREAKYYNDVHIFDLETYAWKKIEPLGAGPAPRSGCQ 218
            R    + A+   L V GG   +         V  ++  T  W  +         RS   
Sbjct: 241 CRRNAGVCAVNGLLYVVGGDDGS----CNLASVEYYNPTTDKWTVVSSC--MSTGRSYA- 293

Query: 219 MAATPDGKI 227
                D ++
Sbjct: 294 GVTVIDKRL 302

>4asc_A Kelch repeat and BTB domain-containing protein 5; protein binding, cytoskeleton; 1.78A {Homo sapiens} Length = 315

 Score = 64.3 bits (157), Expect = 4e-12
 Identities = 23/136 (16%), Positives = 46/136 (33%), Gaps = 10/136 (7%)

Query: 99  PPPRCSHQMVALSADKGQLWMFGGEFSSASESQFHHYKDLWVFRMGEKKWEKIVCKDTPP 158
             P+    +V     + Q+++ GG F +    +         F   + +W  +     P 
Sbjct: 33  QVPKNHVSLVTK---ENQVFVAGGLFYNEDNKEDPMSAYFLQFDHLDSEWLGMP--PLPS 87

Query: 159 SRSGHRMIALKKHLVVFGGFHDNLREAKYYNDVHIFDLETYAWKKIEPLGAGPAPRSGCQ 218
            R    +      + V GG      E +  + V  +D  ++ W + +PL   P    G  
Sbjct: 88  PRCLFGLGEALNSIYVVGGREIKDGE-RCLDSVMCYDRLSFKWGESDPL---PYVVYGH- 142

Query: 219 MAATPDGKILISGGYS 234
              +    + + GG  
Sbjct: 143 TVLSHMDLVYVIGGKG 158

>4asc_A Kelch repeat and BTB domain-containing protein 5; protein binding, cytoskeleton; 1.78A {Homo sapiens} Length = 315

 Score = 60.1 bits (146), Expect = 1e-10
 Identities = 39/215 (18%), Positives = 79/215 (36%), Gaps = 22/215 (10%)

Query: 33  RKNKVIEKVVPEPTRRANFSFLAHPDKDQLILFGGEFYDGQ---KFVFGSPKALDHLILM 89
             N+     +     + + S L   + +Q+ + GG FY+       +       DHL   
Sbjct: 21  AANECYCASLSSQVPKNHVS-LVTKE-NQVFVAGGLFYNEDNKEDPMSAYFLQFDHLD-- 76

Query: 90  NLFVSAPGAPPPRCSHQMVALSADKGQLWMFGGEFSSASESQFHHYKDLWVFRMGEKKWE 149
           + ++  P  P PRC   +         +++ GG      E        +  +     KW 
Sbjct: 77  SEWLGMPPLPSPRCLFGLGEA---LNSIYVVGGREIKDGERCL---DSVMCYDRLSFKWG 130

Query: 150 KIVCKDTPPSRSGHRMIALKKHLVVFGGFHDNLREAKYYNDVHIFDLETYAWKKIEPLGA 209
           +      P    GH +++    + V GG   +    K  N + ++D + + WK++ P+  
Sbjct: 131 ES--DPLPYVVYGHTVLSHMDLVYVIGGKGSD---RKCLNKMCVYDPKKFEWKELAPM-- 183

Query: 210 GPAPRSGCQMAATPDGKILISGGYSKQSVKKDVDK 244
               RS        DG+I+++ G +   +    + 
Sbjct: 184 -QTARSLFGATVH-DGRIIVAAGVTDTGLTSSAEV 216

>4asc_A Kelch repeat and BTB domain-containing protein 5; protein binding, cytoskeleton; 1.78A {Homo sapiens} Length = 315

 Score = 55.1 bits (133), Expect = 4e-09
 Identities = 22/139 (15%), Positives = 42/139 (30%), Gaps = 22/139 (15%)

Query: 101 PRCSHQMVALSADKGQLWMFGGEFSSASESQFHHYKDLWVFRMGEKKWEKIVCKDTPPSR 160
            R            G++ +  G   +             V+ + + KW     +  P  R
Sbjct: 186 ARSLFGATVH---DGRIIVAAGVTDT------GLTSSAEVYSITDNKWAPF--EAFPQER 234

Query: 161 SGHRMIALKKHLVVFGGFHDNLRE-----AKYYNDVHIFDLETYAWKKIEPLGAGPAPRS 215
           S   +++L   L   GGF     E         ND+  ++ E   W+ +       A  +
Sbjct: 235 SSLSLVSLVGTLYAIGGFATLETESGELVPTELNDIWRYNEEEKKWEGVLRE---IAYAA 291

Query: 216 GCQMAATPDGKILISGGYS 234
           G   A     ++ +     
Sbjct: 292 G---ATFLPVRLNVLRLTK 307

>1k3i_A Galactose oxidase precursor; blade beta propeller, prosequence form, precursor of copper enzyme., oxidoreductase; 1.40A {Fusarium SP} SCOP: b.1.18.2 b.18.1.1 b.69.1.1 PDB: 1gof_A 1gog_A 1goh_A 2eie_A 2jkx_A 2vz1_A 2vz3_A 2eic_A 2eib_A 1t2x_A 2eid_A 2wq8_A Length = 656

 Score = 39.9 bits (92), Expect = 5e-04
 Identities = 36/216 (16%), Positives = 56/216 (25%), Gaps = 47/216 (21%)

Query: 45  PTRRANFSFLAHPDKDQLILFG----------GEFYDGQKFVFGSPKALDHLILMNLFVS 94
              R   S     D     + G          GE Y         P +         + S
Sbjct: 284 QVARGYQSSATMSDGRVFTIGGSWSGGVFEKNGEVYS--------PSS-------KTWTS 328

Query: 95  APGAP-PPRCSHQMVALSADKGQLWMFGGEFSSASESQFHHYKDLWVFRMGEKKWEKIVC 153
            P A   P  +     L       W+FG +   +           W +  G    +    
Sbjct: 329 LPNAKVNPMLTADKQGLYRSDNHAWLFGWK-KGSVFQAGPSTAMNWYYTSGSGDVKSA-- 385

Query: 154 KDTPPSRSGHRMI---------ALKKHLVVFGGFHDNLREAKYYNDVHIFDLETYA---- 200
                +R               A+K  ++ FGG  D  +++    + HI  L        
Sbjct: 386 GKRQSNRGVAPDAMCGNAVMYDAVKGKILTFGGSPDY-QDSDATTNAHIITLGEPGTSPN 444

Query: 201 -WKKIEPLGAGPAPRSGCQMAATPDGKILISGGYSK 235
                  L      R+       PDG   I+GG  +
Sbjct: 445 TVFASNGL---YFARTFHTSVVLPDGSTFITGGQRR 477

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	265
4asc_A	315	Kelch repeat and BTB domain-containing protein 5;	100.0
3ii7_A	306	Kelch-like protein 7; protein-binding, kelch-repea	100.0
2woz_A	318	Kelch repeat and BTB domain-containing protein 10;	100.0
2xn4_A	302	Kelch-like protein 2; structural protein, cytoskel	100.0
1zgk_A	308	Kelch-like ECH-associated protein 1; beta-propelle	100.0
3ii7_A	306	Kelch-like protein 7; protein-binding, kelch-repea	100.0
1zgk_A	308	Kelch-like ECH-associated protein 1; beta-propelle	100.0
2xn4_A	302	Kelch-like protein 2; structural protein, cytoskel	100.0
4asc_A	315	Kelch repeat and BTB domain-containing protein 5;	100.0
2vpj_A	301	Kelch-like protein 12; adaptor protein, WNT signal	100.0
2vpj_A	301	Kelch-like protein 12; adaptor protein, WNT signal	100.0
2woz_A	318	Kelch repeat and BTB domain-containing protein 10;	100.0
2uvk_A	357	YJHT; unknown function, hypothetical protein, sial	100.0
2uvk_A	357	YJHT; unknown function, hypothetical protein, sial	100.0
2zwa_A	695	Leucine carboxyl methyltransferase 2; HET: SAH CIT	99.98
2zwa_A	695	Leucine carboxyl methyltransferase 2; HET: SAH CIT	99.96
1k3i_A	656	Galactose oxidase precursor; blade beta propeller,	99.92
1k3i_A	656	Galactose oxidase precursor; blade beta propeller,	99.91
3mbr_X	243	Glutamine cyclotransferase; beta-propeller; 1.44A	96.92
3dsm_A	328	Uncharacterized protein bacuni_02894; seven_blated	96.85
3mbr_X	243	Glutamine cyclotransferase; beta-propeller; 1.44A	96.7
3nok_A	268	Glutaminyl cyclase; beta-propeller, cyclotransfera	96.52
3vgz_A	353	Uncharacterized protein YNCE; beta-propeller, prot	96.13
3nol_A	262	Glutamine cyclotransferase; beta-propeller, glutam	96.08
3nol_A	262	Glutamine cyclotransferase; beta-propeller, glutam	96.03
3dsm_A	328	Uncharacterized protein bacuni_02894; seven_blated	95.97
3q7m_A	376	Lipoprotein YFGL, BAMB; beta-propeller, BAM comple	95.91
3vgz_A	353	Uncharacterized protein YNCE; beta-propeller, prot	95.7
1l0q_A	391	Surface layer protein; SLP, S-layer, 7-bladed beta	95.66
3nok_A	268	Glutaminyl cyclase; beta-propeller, cyclotransfera	95.43
1l0q_A	391	Surface layer protein; SLP, S-layer, 7-bladed beta	94.91
1ri6_A	343	Putative isomerase YBHE; 7-bladed propeller, enzym	94.76
2iwa_A	266	Glutamine cyclotransferase; pyroglutamate, acyltra	94.53
2iwa_A	266	Glutamine cyclotransferase; pyroglutamate, acyltra	94.52
3q7m_A	376	Lipoprotein YFGL, BAMB; beta-propeller, BAM comple	94.37
2hqs_A	415	Protein TOLB; TOLB, PAL, TOL, transport protein-li	94.32
3ju4_A	670	Endo-N-acetylneuraminidase; endonf, polysia, high-	93.9
1pex_A	207	Collagenase-3, MMP-13; C-terminal hemopexin-like d	93.58
3bws_A	433	Protein LP49; two-domain, immunoglobulin-like, 7-b	93.47
1ri6_A	343	Putative isomerase YBHE; 7-bladed propeller, enzym	93.28
1gxr_A	337	ESG1, transducin-like enhancer protein 1; transcri	93.27
3hfq_A	347	Uncharacterized protein LP_2219; Q88V64_lacpl, NES	93.25
1qhu_A	460	Protein (hemopexin); beta propeller, HAEM binding	93.24
3hfq_A	347	Uncharacterized protein LP_2219; Q88V64_lacpl, NES	92.9
1qks_A	567	Cytochrome CD1 nitrite reductase; enzyme, oxidored	92.9
3no2_A	276	Uncharacterized protein; six-bladed beta-propeller	92.71
3scy_A	361	Hypothetical bacterial 6-phosphogluconolactonase;	92.69
3u4y_A	331	Uncharacterized protein; structural genomics, PSI-	92.69
3jrp_A	379	Fusion protein of protein transport protein SEC13	92.61
1pex_A	207	Collagenase-3, MMP-13; C-terminal hemopexin-like d	92.59
2ojh_A	297	Uncharacterized protein ATU1656/AGR_C_3050; TOLB,	92.57
3jrp_A	379	Fusion protein of protein transport protein SEC13	92.15
3fm0_A	345	Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD r	92.12
3bws_A	433	Protein LP49; two-domain, immunoglobulin-like, 7-b	91.81
1gxr_A	337	ESG1, transducin-like enhancer protein 1; transcri	91.5
1k8k_C	372	P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-	91.09
1gen_A	218	Gelatinase A; hydrolase, hemopexin domain, metallo	90.63
1k8k_C	372	P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-	90.2
3c7x_A	196	Matrix metalloproteinase-14; membrane protein inte	89.89
1nir_A	543	Nitrite reductase; hemoprotein, denitrification, d	89.7
3v9f_A	781	Two-component system sensor histidine kinase/RESP	89.65
4a2l_A	795	BT_4663, two-component system sensor histidine kin	89.22
3no2_A	276	Uncharacterized protein; six-bladed beta-propeller	89.08
1jmx_B	349	Amine dehydrogenase; oxidoreductase; HET: TRQ HEC;	89.04
4aez_A	401	CDC20, WD repeat-containing protein SLP1; cell cyc	89.01
3ba0_A	365	Macrophage metalloelastase; FULL-length MMP-12, he	88.72
1itv_A	195	MMP9; adaptive molecular recognition, beta propell	88.58
3v9f_A	781	Two-component system sensor histidine kinase/RESP	88.52
3u4y_A	331	Uncharacterized protein; structural genomics, PSI-	88.33
2dg1_A	333	DRP35, lactonase; beta propeller, hydrolase; 1.72A	88.21
4e54_B	435	DNA damage-binding protein 2; beta barrel, double	87.88
1kv9_A	668	Type II quinohemoprotein alcohol dehydrogenase; el	87.76
4ery_A	312	WD repeat-containing protein 5; WD40, WIN motif, b	87.18
3dwl_C	377	Actin-related protein 2/3 complex subunit 1; prope	86.88
2xbg_A	327	YCF48-like protein; photosynthesis, photosystem II	86.67
2hqs_A	415	Protein TOLB; TOLB, PAL, TOL, transport protein-li	86.64
3ba0_A	365	Macrophage metalloelastase; FULL-length MMP-12, he	86.63
2aq5_A	402	Coronin-1A; WD40 repeat, 7-bladed beta-propeller,	86.54
2z2n_A	299	Virginiamycin B lyase; seven-bladed beta-propeller	86.18
1nir_A	543	Nitrite reductase; hemoprotein, denitrification, d	86.11
1itv_A	195	MMP9; adaptive molecular recognition, beta propell	86.04
1yiq_A	689	Quinohemoprotein alcohol dehydrogenase; electron t	85.94
3scy_A	361	Hypothetical bacterial 6-phosphogluconolactonase;	85.88
2pm9_A	416	Protein WEB1, protein transport protein SEC31; bet	85.75
4a11_B	408	DNA excision repair protein ERCC-8; DNA binding pr	85.48
2p9w_A	334	MAL S 1 allergenic protein; beta propeller; 1.35A	85.47
1flg_A	582	Protein (quinoprotein ethanol dehydrogenase); supe	85.46
3mkq_A	814	Coatomer beta'-subunit; beta-propeller, alpha-sole	85.39
2ojh_A	297	Uncharacterized protein ATU1656/AGR_C_3050; TOLB,	85.11
1kb0_A	677	Quinohemoprotein alcohol dehydrogenase; beta-prope	85.06
1qhu_A	460	Protein (hemopexin); beta propeller, HAEM binding	84.89
3k26_A	366	Polycomb protein EED; WD40, structural genomics, N	84.53
1q7f_A	286	NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL	83.86
3jro_A	753	Fusion protein of protein transport protein SEC13	83.68
1gen_A	218	Gelatinase A; hydrolase, hemopexin domain, metallo	83.2
1su3_A	450	Interstitial collagenase; prodomain, hemopexin dom	83.16
1rwi_B	270	Serine/threonine-protein kinase PKND; beta propell	82.11
2z3z_A	706	Dipeptidyl aminopeptidase IV; peptidase family S9,	81.7
4a2l_A	795	BT_4663, two-component system sensor histidine kin	81.64
3jro_A	753	Fusion protein of protein transport protein SEC13	81.61
3e5z_A	296	Putative gluconolactonase; X-RAY NESG Q9RXN3 gluco	81.4
1rwi_B	270	Serine/threonine-protein kinase PKND; beta propell	81.03
2pm9_A	416	Protein WEB1, protein transport protein SEC31; bet	80.89
2xbg_A	327	YCF48-like protein; photosynthesis, photosystem II	80.84
3c7x_A	196	Matrix metalloproteinase-14; membrane protein inte	80.73
3ott_A	758	Two-component system sensor histidine kinase; beta	80.67
3hrp_A	409	Uncharacterized protein; NP_812590.1, structural g	80.56
1kb0_A	677	Quinohemoprotein alcohol dehydrogenase; beta-prope	80.34
4ery_A	312	WD repeat-containing protein 5; WD40, WIN motif, b	80.29
2aq5_A	402	Coronin-1A; WD40 repeat, 7-bladed beta-propeller,	80.07

>4asc_A Kelch repeat and BTB domain-containing protein 5; protein binding, cytoskeleton; 1.78A {Homo sapiens}

Probab=100.00  E-value=3.4e-37  Score=254.24  Aligned_cols=213  Identities=14%  Similarity=0.257  Sum_probs=177.2

Q ss_pred             HHHHHHhhcccceEEEeccCCCCCCCceeeEEecCCCEEEEECcEEeCCCceeeCCCcccCceEEEEe----eecCCCCC
Q psy14331         24 VRDIEAEEKRKNKVIEKVVPEPTRRANFSFLAHPDKDQLILFGGEFYDGQKFVFGSPKALDHLILMNL----FVSAPGAP   99 (265)
Q Consensus        24 ~~~~~~~d~~~~~w~~~~~~~p~~r~~~~~~~~~~~~~lyv~GG~~~~~~~~~~~~~~~~~~~~~yd~----w~~~~~~p   99 (265)
                      .++++.||+.+++|.. .+++|.+|.+|+++++  +++||++||.......      ..++++++||+    |+..+++|
T Consensus        66 ~~~~~~~d~~~~~W~~-~~~~p~~r~~~~~~~~--~~~lyv~GG~~~~~~~------~~~~~~~~~d~~~~~W~~~~~~p  136 (315)
T 4asc_A           66 SAYFLQFDHLDSEWLG-MPPLPSPRCLFGLGEA--LNSIYVVGGREIKDGE------RCLDSVMCYDRLSFKWGESDPLP  136 (315)
T ss_dssp             EEEEEEEETTTTEEEE-CCCBSSCEESCEEEEE--TTEEEEECCEESSTTC------CBCCCEEEEETTTTEEEECCCCS
T ss_pred             ccceEEecCCCCeEEE-CCCCCcchhceeEEEE--CCEEEEEeCCcCCCCC------cccceEEEECCCCCcEeECCCCC
Confidence            3458999999999988 7889999999999987  9999999996432111      11799999999    99999999


Q ss_pred             CCccccceEEEecCCCEEEEEcCcccCCCccccccCCceeEEEcCCCcEEEEecCCCCCCCcCceEEEECCEEEEEcCcc
Q psy14331        100 PPRCSHQMVALSADKGQLWMFGGEFSSASESQFHHYKDLWVFRMGEKKWEKIVCKDTPPSRSGHRMIALKKHLVVFGGFH  179 (265)
Q Consensus       100 ~~r~~~~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~~~yd~~~~~W~~~~~~~~p~~~~~~~~~~~~~~iyv~GG~~  179 (265)
                      .+|..|+++.+   +++||++||.....     ..++++++||+.+++|+.++++  |.+|..|+++.++++||++||.+
T Consensus       137 ~~r~~~~~~~~---~~~iyv~GG~~~~~-----~~~~~~~~yd~~~~~W~~~~~~--p~~r~~~~~~~~~~~iyv~GG~~  206 (315)
T 4asc_A          137 YVVYGHTVLSH---MDLVYVIGGKGSDR-----KCLNKMCVYDPKKFEWKELAPM--QTARSLFGATVHDGRIIVAAGVT  206 (315)
T ss_dssp             SCCBSCEEEEE---TTEEEEECCBCTTS-----CBCCCEEEEETTTTEEEECCCC--SSCCBSCEEEEETTEEEEEEEEC
T ss_pred             CcccceeEEEE---CCEEEEEeCCCCCC-----cccceEEEEeCCCCeEEECCCC--CCchhceEEEEECCEEEEEeccC
Confidence            99999999987   89999999984332     3479999999999999999866  68999999999999999999986


Q ss_pred             CCCCccccCCceEEEEcCCCceEEeccCCCCCCCCCCceEEEeCCCeEEEEcCccccccccccccceeeceEEEEecCcc
Q psy14331        180 DNLREAKYYNDVHIFDLETYAWKKIEPLGAGPAPRSGCQMAATPDGKILISGGYSKQSVKKDVDKGIVHTDTFLLTPDSK  259 (265)
Q Consensus       180 ~~~~~~~~~~~v~~y~~~~~~W~~~~~~~~~p~~~~~~~~~~~~~~~iyi~GG~~~~~~~~~~~~~~~~~~~w~~~~~~~  259 (265)
                      ..    ...+++++||+.+++|+.+.+   +|.+|..|+++.+ +++|||+||.+.....+........+++|+||++++
T Consensus       207 ~~----~~~~~~~~yd~~~~~W~~~~~---~p~~r~~~~~~~~-~~~l~v~GG~~~~~~~~~~~~~~~~~~v~~yd~~~~  278 (315)
T 4asc_A          207 DT----GLTSSAEVYSITDNKWAPFEA---FPQERSSLSLVSL-VGTLYAIGGFATLETESGELVPTELNDIWRYNEEEK  278 (315)
T ss_dssp             SS----SEEEEEEEEETTTTEEEEECC---CSSCCBSCEEEEE-TTEEEEEEEEEEEECTTSCEEEEEEEEEEEEETTTT
T ss_pred             CC----CccceEEEEECCCCeEEECCC---CCCcccceeEEEE-CCEEEEECCccccCcCCccccccccCcEEEecCCCC
Confidence            55    346899999999999999987   5889999998877 899999999864321111111245788999999999


Q ss_pred             cccc
Q psy14331        260 TLRS  263 (265)
Q Consensus       260 ~w~~  263 (265)
                      +|+.
T Consensus       279 ~W~~  282 (315)
T 4asc_A          279 KWEG  282 (315)
T ss_dssp             EEEE
T ss_pred             hhhh
Confidence            9985

>3ii7_A Kelch-like protein 7; protein-binding, kelch-repeat, structural genomics, structur genomics consortium, SGC, kelch repeat, nucleus, protein BI; 1.63A {Homo sapiens}

Probab=100.00  E-value=1.5e-36  Score=249.34  Aligned_cols=204  Identities=16%  Similarity=0.222  Sum_probs=175.6

Q ss_pred             HHHHHHhhcccceEEEeccCCCCCCCceeeEEecCCCEEEEECcEEeCCCceeeCCCcccCceEEEEe----eecCCCCC
Q psy14331         24 VRDIEAEEKRKNKVIEKVVPEPTRRANFSFLAHPDKDQLILFGGEFYDGQKFVFGSPKALDHLILMNL----FVSAPGAP   99 (265)
Q Consensus        24 ~~~~~~~d~~~~~w~~~~~~~p~~r~~~~~~~~~~~~~lyv~GG~~~~~~~~~~~~~~~~~~~~~yd~----w~~~~~~p   99 (265)
                      .++++.||+.+++|.. .+++|.+|.+|+++++  +++||++||..  ...        ++++++||+    |...+++|
T Consensus        23 ~~~~~~~d~~~~~W~~-~~~~p~~r~~~~~~~~--~~~lyv~GG~~--~~~--------~~~~~~~d~~~~~W~~~~~~p   89 (306)
T 3ii7_A           23 PQSCRYFNPKDYSWTD-IRCPFEKRRDAACVFW--DNVVYILGGSQ--LFP--------IKRMDCYNVVKDSWYSKLGPP   89 (306)
T ss_dssp             TTSEEEEETTTTEEEE-CCCCSCCCBSCEEEEE--TTEEEEECCBS--SSB--------CCEEEEEETTTTEEEEEECCS
T ss_pred             CceEEEecCCCCCEec-CCCCCcccceeEEEEE--CCEEEEEeCCC--CCC--------cceEEEEeCCCCeEEECCCCC
Confidence            6789999999999998 7889999999999987  99999999953  211        799999999    99999999


Q ss_pred             CCccccceEEEecCCCEEEEEcCcccCCCccccccCCceeEEEcCCCcEEEEecCCCCCCCcCceEEEECCEEEEEcCcc
Q psy14331        100 PPRCSHQMVALSADKGQLWMFGGEFSSASESQFHHYKDLWVFRMGEKKWEKIVCKDTPPSRSGHRMIALKKHLVVFGGFH  179 (265)
Q Consensus       100 ~~r~~~~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~~~yd~~~~~W~~~~~~~~p~~~~~~~~~~~~~~iyv~GG~~  179 (265)
                      .+|..|+++.+   +++||++||.....     ...+++++||+.+++|+.++++  |.+|..|+++.++++||++||..
T Consensus        90 ~~r~~~~~~~~---~~~iyv~GG~~~~~-----~~~~~~~~~d~~~~~W~~~~~~--p~~r~~~~~~~~~~~iyv~GG~~  159 (306)
T 3ii7_A           90 TPRDSLAACAA---EGKIYTSGGSEVGN-----SALYLFECYDTRTESWHTKPSM--LTQRCSHGMVEANGLIYVCGGSL  159 (306)
T ss_dssp             SCCBSCEEEEE---TTEEEEECCBBTTB-----SCCCCEEEEETTTTEEEEECCC--SSCCBSCEEEEETTEEEEECCEE
T ss_pred             ccccceeEEEE---CCEEEEECCCCCCC-----cEeeeEEEEeCCCCceEeCCCC--cCCcceeEEEEECCEEEEECCCC
Confidence            99999999988   89999999985322     3478999999999999999766  68999999999999999999987


Q ss_pred             CCCCccccCCceEEEEcCCCceEEeccCCCCCCCCCCceEEEeCCCeEEEEcCccccccccccccceeeceEEEEecCcc
Q psy14331        180 DNLREAKYYNDVHIFDLETYAWKKIEPLGAGPAPRSGCQMAATPDGKILISGGYSKQSVKKDVDKGIVHTDTFLLTPDSK  259 (265)
Q Consensus       180 ~~~~~~~~~~~v~~y~~~~~~W~~~~~~~~~p~~~~~~~~~~~~~~~iyi~GG~~~~~~~~~~~~~~~~~~~w~~~~~~~  259 (265)
                      .........+++++||+.+++|+.+.+   +|.+|..|+++.+ +++|||+||.+...         ..+++|.||+.++
T Consensus       160 ~~~~~~~~~~~~~~yd~~~~~W~~~~~---~p~~r~~~~~~~~-~~~i~v~GG~~~~~---------~~~~~~~yd~~~~  226 (306)
T 3ii7_A          160 GNNVSGRVLNSCEVYDPATETWTELCP---MIEARKNHGLVFV-KDKIFAVGGQNGLG---------GLDNVEYYDIKLN  226 (306)
T ss_dssp             SCTTTCEECCCEEEEETTTTEEEEECC---CSSCCBSCEEEEE-TTEEEEECCEETTE---------EBCCEEEEETTTT
T ss_pred             CCCCcccccceEEEeCCCCCeEEECCC---ccchhhcceEEEE-CCEEEEEeCCCCCC---------CCceEEEeeCCCC
Confidence            654322347899999999999999987   4889999998887 89999999986543         4667888888888


Q ss_pred             cccc
Q psy14331        260 TLRS  263 (265)
Q Consensus       260 ~w~~  263 (265)
                      +|+.
T Consensus       227 ~W~~  230 (306)
T 3ii7_A          227 EWKM  230 (306)
T ss_dssp             EEEE
T ss_pred             cEEE
Confidence            8875

>2woz_A Kelch repeat and BTB domain-containing protein 10; protein binding, invasion and metastasis, UBL conjugation pathway, UBL protein folding; 2.00A {Rattus norvegicus}

Probab=100.00  E-value=1.1e-36  Score=251.42  Aligned_cols=210  Identities=17%  Similarity=0.319  Sum_probs=175.0

Q ss_pred             HHHHhhcccceEEEeccCCCCCCCceeeEEecCCCEEEEECcEEeCCCceeeCCCcccCceEEEEe----eecCCCCCCC
Q psy14331         26 DIEAEEKRKNKVIEKVVPEPTRRANFSFLAHPDKDQLILFGGEFYDGQKFVFGSPKALDHLILMNL----FVSAPGAPPP  101 (265)
Q Consensus        26 ~~~~~d~~~~~w~~~~~~~p~~r~~~~~~~~~~~~~lyv~GG~~~~~~~~~~~~~~~~~~~~~yd~----w~~~~~~p~~  101 (265)
                      .++.||+.+++|.. .+++|.+|..|+++++  +++||++||........       ++++++||+    |...+++|.+
T Consensus        79 ~~~~~d~~~~~W~~-~~~~p~~r~~~~~~~~--~~~iyv~GG~~~~~~~~-------~~~~~~yd~~~~~W~~~~~~p~~  148 (318)
T 2woz_A           79 YFFQLDNVSSEWVG-LPPLPSARCLFGLGEV--DDKIYVVAGKDLQTEAS-------LDSVLCYDPVAAKWSEVKNLPIK  148 (318)
T ss_dssp             EEEEEETTTTEEEE-CSCBSSCBCSCEEEEE--TTEEEEEEEEBTTTCCE-------EEEEEEEETTTTEEEEECCCSSC
T ss_pred             cEEEEeCCCCcEEE-CCCCCccccccceEEE--CCEEEEEcCccCCCCcc-------cceEEEEeCCCCCEeECCCCCCc
Confidence            37899999999998 7889999999999987  99999999963222221       789999999    9999999999


Q ss_pred             ccccceEEEecCCCEEEEEcCcccCCCccccccCCceeEEEcCCCcEEEEecCCCCCCCcCceEEEECCEEEEEcCccCC
Q psy14331        102 RCSHQMVALSADKGQLWMFGGEFSSASESQFHHYKDLWVFRMGEKKWEKIVCKDTPPSRSGHRMIALKKHLVVFGGFHDN  181 (265)
Q Consensus       102 r~~~~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~~~yd~~~~~W~~~~~~~~p~~~~~~~~~~~~~~iyv~GG~~~~  181 (265)
                      |..|+++.+   +++||++||.....     ...+++++||+.+++|+.++++  |.+|..|++++++++||++||.+..
T Consensus       149 r~~~~~~~~---~~~iyv~GG~~~~~-----~~~~~~~~yd~~~~~W~~~~~~--p~~r~~~~~~~~~~~iyv~GG~~~~  218 (318)
T 2woz_A          149 VYGHNVISH---NGMIYCLGGKTDDK-----KCTNRVFIYNPKKGDWKDLAPM--KTPRSMFGVAIHKGKIVIAGGVTED  218 (318)
T ss_dssp             EESCEEEEE---TTEEEEECCEESSS-----CBCCCEEEEETTTTEEEEECCC--SSCCBSCEEEEETTEEEEEEEEETT
T ss_pred             ccccEEEEE---CCEEEEEcCCCCCC-----CccceEEEEcCCCCEEEECCCC--CCCcccceEEEECCEEEEEcCcCCC
Confidence            999999887   99999999985433     2478999999999999999865  6899999999999999999998764


Q ss_pred             CCccccCCceEEEEcCCCceEEeccCCCCCCCCCCceEEEeCCCeEEEEcCccccccccccccceeeceEEEEecCcccc
Q psy14331        182 LREAKYYNDVHIFDLETYAWKKIEPLGAGPAPRSGCQMAATPDGKILISGGYSKQSVKKDVDKGIVHTDTFLLTPDSKTL  261 (265)
Q Consensus       182 ~~~~~~~~~v~~y~~~~~~W~~~~~~~~~p~~~~~~~~~~~~~~~iyi~GG~~~~~~~~~~~~~~~~~~~w~~~~~~~~w  261 (265)
                          ...+++++||+.+++|+.+..   +|.+|..|+++.+ +++|||+||.+..............+++|.||+++++|
T Consensus       219 ----~~~~~~~~yd~~~~~W~~~~~---~p~~r~~~~~~~~-~~~i~v~GG~~~~~~~~~~~~~~~~~~v~~yd~~~~~W  290 (318)
T 2woz_A          219 ----GLSASVEAFDLKTNKWEVMTE---FPQERSSISLVSL-AGSLYAIGGFAMIQLESKEFAPTEVNDIWKYEDDKKEW  290 (318)
T ss_dssp             ----EEEEEEEEEETTTCCEEECCC---CSSCCBSCEEEEE-TTEEEEECCBCCBC----CCBCCBCCCEEEEETTTTEE
T ss_pred             ----CccceEEEEECCCCeEEECCC---CCCcccceEEEEE-CCEEEEECCeeccCCCCceeccceeeeEEEEeCCCCEe
Confidence                346899999999999999987   5888999998877 89999999987542111111123567899999999999


Q ss_pred             cc
Q psy14331        262 RS  263 (265)
Q Consensus       262 ~~  263 (265)
                      ++
T Consensus       291 ~~  292 (318)
T 2woz_A          291 AG  292 (318)
T ss_dssp             EE
T ss_pred             hh
Confidence            85

>2xn4_A Kelch-like protein 2; structural protein, cytoskeleton; 1.99A {Homo sapiens}

Probab=100.00  E-value=7.8e-37  Score=250.54  Aligned_cols=204  Identities=19%  Similarity=0.279  Sum_probs=173.1

Q ss_pred             HHHHHHHHhhcccceEEEeccCCCCCCCceeeEEecCCCEEEEECcEEeCCCceeeCCCcccCceEEEEe----eecCCC
Q psy14331         22 KIVRDIEAEEKRKNKVIEKVVPEPTRRANFSFLAHPDKDQLILFGGEFYDGQKFVFGSPKALDHLILMNL----FVSAPG   97 (265)
Q Consensus        22 ~~~~~~~~~d~~~~~w~~~~~~~p~~r~~~~~~~~~~~~~lyv~GG~~~~~~~~~~~~~~~~~~~~~yd~----w~~~~~   97 (265)
                      ...++++.||+.+++|.. .+++|.+|..|+++++  +++||++||.  +....       ++++++||+    |...++
T Consensus        74 ~~~~~~~~~d~~~~~W~~-~~~~p~~r~~~~~~~~--~~~iyv~GG~--~~~~~-------~~~~~~~d~~~~~W~~~~~  141 (302)
T 2xn4_A           74 LRVRTVDSYDPVKDQWTS-VANMRDRRSTLGAAVL--NGLLYAVGGF--DGSTG-------LSSVEAYNIKSNEWFHVAP  141 (302)
T ss_dssp             SBCCCEEEEETTTTEEEE-ECCCSSCCBSCEEEEE--TTEEEEEEEE--CSSCE-------EEEEEEEETTTTEEEEECC
T ss_pred             ccccceEEECCCCCceee-CCCCCccccceEEEEE--CCEEEEEcCC--CCCcc-------CceEEEEeCCCCeEeecCC
Confidence            345678999999999999 7889999999999987  9999999995  33221       689999999    999999


Q ss_pred             CCCCccccceEEEecCCCEEEEEcCcccCCCccccccCCceeEEEcCCCcEEEEecCCCCCCCcCceEEEECCEEEEEcC
Q psy14331         98 APPPRCSHQMVALSADKGQLWMFGGEFSSASESQFHHYKDLWVFRMGEKKWEKIVCKDTPPSRSGHRMIALKKHLVVFGG  177 (265)
Q Consensus        98 ~p~~r~~~~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~~~yd~~~~~W~~~~~~~~p~~~~~~~~~~~~~~iyv~GG  177 (265)
                      +|.+|..|+++.+   +++||++||......    ...+++++||+.+++|+.++++  |.+|..|++++++++||++||
T Consensus       142 ~p~~r~~~~~~~~---~~~iyv~GG~~~~~~----~~~~~~~~yd~~~~~W~~~~~~--p~~r~~~~~~~~~~~iyv~GG  212 (302)
T 2xn4_A          142 MNTRRSSVGVGVV---GGLLYAVGGYDVASR----QCLSTVECYNATTNEWTYIAEM--STRRSGAGVGVLNNLLYAVGG  212 (302)
T ss_dssp             CSSCCBSCEEEEE---TTEEEEECCEETTTT----EECCCEEEEETTTTEEEEECCC--SSCCBSCEEEEETTEEEEECC
T ss_pred             CCCcccCceEEEE---CCEEEEEeCCCCCCC----ccccEEEEEeCCCCcEEECCCC--ccccccccEEEECCEEEEECC
Confidence            9999999999888   899999999865431    2368999999999999999765  689999999999999999999


Q ss_pred             ccCCCCccccCCceEEEEcCCCceEEeccCCCCCCCCCCceEEEeCCCeEEEEcCccccccccccccceeeceEEEEecC
Q psy14331        178 FHDNLREAKYYNDVHIFDLETYAWKKIEPLGAGPAPRSGCQMAATPDGKILISGGYSKQSVKKDVDKGIVHTDTFLLTPD  257 (265)
Q Consensus       178 ~~~~~~~~~~~~~v~~y~~~~~~W~~~~~~~~~p~~~~~~~~~~~~~~~iyi~GG~~~~~~~~~~~~~~~~~~~w~~~~~  257 (265)
                      .+..    ...+++++||+.+++|+.+..   +|.+|..|+++.+ +++|||+||.+...         ..+++|+||++
T Consensus       213 ~~~~----~~~~~~~~yd~~~~~W~~~~~---~~~~r~~~~~~~~-~~~i~v~GG~~~~~---------~~~~v~~yd~~  275 (302)
T 2xn4_A          213 HDGP----LVRKSVEVYDPTTNAWRQVAD---MNMCRRNAGVCAV-NGLLYVVGGDDGSC---------NLASVEYYNPT  275 (302)
T ss_dssp             BSSS----SBCCCEEEEETTTTEEEEECC---CSSCCBSCEEEEE-TTEEEEECCBCSSS---------BCCCEEEEETT
T ss_pred             CCCC----cccceEEEEeCCCCCEeeCCC---CCCccccCeEEEE-CCEEEEECCcCCCc---------ccccEEEEcCC
Confidence            8654    347899999999999999987   4788999998877 89999999986543         34567778887


Q ss_pred             cccccc
Q psy14331        258 SKTLRS  263 (265)
Q Consensus       258 ~~~w~~  263 (265)
                      +++|+.
T Consensus       276 ~~~W~~  281 (302)
T 2xn4_A          276 TDKWTV  281 (302)
T ss_dssp             TTEEEE
T ss_pred             CCeEEE
Confidence            777764

>1zgk_A Kelch-like ECH-associated protein 1; beta-propeller, kelch repeat motif, protein binding; HET: MSE; 1.35A {Homo sapiens} SCOP: b.68.11.1 PDB: 2flu_X 1u6d_X 1x2j_A 1x2r_A 2dyh_A 2z32_A 3ade_A

Probab=100.00  E-value=1e-36  Score=250.57  Aligned_cols=202  Identities=18%  Similarity=0.280  Sum_probs=174.5

Q ss_pred             HHHHHHHHhhcccceEEEeccCCCCCCCceeeEEecCCCEEEEECcEEeCCCceeeCCCcccCceEEEEe----eecCCC
Q psy14331         22 KIVRDIEAEEKRKNKVIEKVVPEPTRRANFSFLAHPDKDQLILFGGEFYDGQKFVFGSPKALDHLILMNL----FVSAPG   97 (265)
Q Consensus        22 ~~~~~~~~~d~~~~~w~~~~~~~p~~r~~~~~~~~~~~~~lyv~GG~~~~~~~~~~~~~~~~~~~~~yd~----w~~~~~   97 (265)
                      ...++++.||+.+++|.. .+++|.+|..|+++++  +++||++||..  ....       ++++++||+    |...++
T Consensus        87 ~~~~~~~~~d~~~~~W~~-~~~~p~~r~~~~~~~~--~~~iyv~GG~~--~~~~-------~~~~~~yd~~~~~W~~~~~  154 (308)
T 1zgk_A           87 TDSSALDCYNPMTNQWSP-CAPMSVPRNRIGVGVI--DGHIYAVGGSH--GCIH-------HNSVERYEPERDEWHLVAP  154 (308)
T ss_dssp             EECCCEEEEETTTTEEEE-CCCCSSCCBTCEEEEE--TTEEEEECCEE--TTEE-------CCCEEEEETTTTEEEECCC
T ss_pred             eecceEEEECCCCCeEeE-CCCCCcCccccEEEEE--CCEEEEEcCCC--CCcc-------cccEEEECCCCCeEeECCC
Confidence            355679999999999999 7889999999999987  99999999963  2221       789999999    999999


Q ss_pred             CCCCccccceEEEecCCCEEEEEcCcccCCCccccccCCceeEEEcCCCcEEEEecCCCCCCCcCceEEEECCEEEEEcC
Q psy14331         98 APPPRCSHQMVALSADKGQLWMFGGEFSSASESQFHHYKDLWVFRMGEKKWEKIVCKDTPPSRSGHRMIALKKHLVVFGG  177 (265)
Q Consensus        98 ~p~~r~~~~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~~~yd~~~~~W~~~~~~~~p~~~~~~~~~~~~~~iyv~GG  177 (265)
                      +|.+|..|+++.+   +++||++||.....      .++++++||+.+++|+.++++  |.+|..|+++.++++||++||
T Consensus       155 ~p~~r~~~~~~~~---~~~iyv~GG~~~~~------~~~~~~~yd~~~~~W~~~~~~--p~~r~~~~~~~~~~~iyv~GG  223 (308)
T 1zgk_A          155 MLTRRIGVGVAVL---NRLLYAVGGFDGTN------RLNSAECYYPERNEWRMITAM--NTIRSGAGVCVLHNCIYAAGG  223 (308)
T ss_dssp             CSSCCBSCEEEEE---TTEEEEECCBCSSC------BCCCEEEEETTTTEEEECCCC--SSCCBSCEEEEETTEEEEECC
T ss_pred             CCccccceEEEEE---CCEEEEEeCCCCCC------cCceEEEEeCCCCeEeeCCCC--CCccccceEEEECCEEEEEeC
Confidence            9999999999988   89999999976543      278999999999999999765  689999999999999999999


Q ss_pred             ccCCCCccccCCceEEEEcCCCceEEeccCCCCCCCCCCceEEEeCCCeEEEEcCccccccccccccceeeceEEEEecC
Q psy14331        178 FHDNLREAKYYNDVHIFDLETYAWKKIEPLGAGPAPRSGCQMAATPDGKILISGGYSKQSVKKDVDKGIVHTDTFLLTPD  257 (265)
Q Consensus       178 ~~~~~~~~~~~~~v~~y~~~~~~W~~~~~~~~~p~~~~~~~~~~~~~~~iyi~GG~~~~~~~~~~~~~~~~~~~w~~~~~  257 (265)
                      .+..    ...+++++||+.+++|+.+..   +|.+|..|+++++ +++|||+||.+...         ..+++|.||++
T Consensus       224 ~~~~----~~~~~v~~yd~~~~~W~~~~~---~p~~r~~~~~~~~-~~~i~v~GG~~~~~---------~~~~v~~yd~~  286 (308)
T 1zgk_A          224 YDGQ----DQLNSVERYDVETETWTFVAP---MKHRRSALGITVH-QGRIYVLGGYDGHT---------FLDSVECYDPD  286 (308)
T ss_dssp             BCSS----SBCCCEEEEETTTTEEEECCC---CSSCCBSCEEEEE-TTEEEEECCBCSSC---------BCCEEEEEETT
T ss_pred             CCCC----CccceEEEEeCCCCcEEECCC---CCCCccceEEEEE-CCEEEEEcCcCCCc---------ccceEEEEcCC
Confidence            8754    347899999999999999987   5889999998877 89999999987543         45678888888


Q ss_pred             cccccc
Q psy14331        258 SKTLRS  263 (265)
Q Consensus       258 ~~~w~~  263 (265)
                      +++|++
T Consensus       287 ~~~W~~  292 (308)
T 1zgk_A          287 TDTWSE  292 (308)
T ss_dssp             TTEEEE
T ss_pred             CCEEee
Confidence            888874

>3ii7_A Kelch-like protein 7; protein-binding, kelch-repeat, structural genomics, structur genomics consortium, SGC, kelch repeat, nucleus, protein BI; 1.63A {Homo sapiens}

Probab=100.00  E-value=1.2e-36  Score=249.93  Aligned_cols=208  Identities=17%  Similarity=0.314  Sum_probs=176.4

Q ss_pred             HHHHHHHHHhhcccceEEEeccCCCCCCCceeeEEecCCCEEEEECcEEeCCCceeeCCCcccCceEEEEe----eecCC
Q psy14331         21 EKIVRDIEAEEKRKNKVIEKVVPEPTRRANFSFLAHPDKDQLILFGGEFYDGQKFVFGSPKALDHLILMNL----FVSAP   96 (265)
Q Consensus        21 ~~~~~~~~~~d~~~~~w~~~~~~~p~~r~~~~~~~~~~~~~lyv~GG~~~~~~~~~~~~~~~~~~~~~yd~----w~~~~   96 (265)
                      ...+++++.||+.+++|.. .+++|.+|..|+++++  +++||++||... ...       .++++++||+    |...+
T Consensus        66 ~~~~~~~~~~d~~~~~W~~-~~~~p~~r~~~~~~~~--~~~iyv~GG~~~-~~~-------~~~~~~~~d~~~~~W~~~~  134 (306)
T 3ii7_A           66 LFPIKRMDCYNVVKDSWYS-KLGPPTPRDSLAACAA--EGKIYTSGGSEV-GNS-------ALYLFECYDTRTESWHTKP  134 (306)
T ss_dssp             SSBCCEEEEEETTTTEEEE-EECCSSCCBSCEEEEE--TTEEEEECCBBT-TBS-------CCCCEEEEETTTTEEEEEC
T ss_pred             CCCcceEEEEeCCCCeEEE-CCCCCccccceeEEEE--CCEEEEECCCCC-CCc-------EeeeEEEEeCCCCceEeCC
Confidence            4456789999999999998 7889999999999987  999999999531 211       1789999999    99999


Q ss_pred             CCCCCccccceEEEecCCCEEEEEcCcccCCCccccccCCceeEEEcCCCcEEEEecCCCCCCCcCceEEEECCEEEEEc
Q psy14331         97 GAPPPRCSHQMVALSADKGQLWMFGGEFSSASESQFHHYKDLWVFRMGEKKWEKIVCKDTPPSRSGHRMIALKKHLVVFG  176 (265)
Q Consensus        97 ~~p~~r~~~~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~~~yd~~~~~W~~~~~~~~p~~~~~~~~~~~~~~iyv~G  176 (265)
                      ++|.+|..|+++.+   +++||++||........  ...+++++||+.+++|+.++++  |.+|..|+++.++++||++|
T Consensus       135 ~~p~~r~~~~~~~~---~~~iyv~GG~~~~~~~~--~~~~~~~~yd~~~~~W~~~~~~--p~~r~~~~~~~~~~~i~v~G  207 (306)
T 3ii7_A          135 SMLTQRCSHGMVEA---NGLIYVCGGSLGNNVSG--RVLNSCEVYDPATETWTELCPM--IEARKNHGLVFVKDKIFAVG  207 (306)
T ss_dssp             CCSSCCBSCEEEEE---TTEEEEECCEESCTTTC--EECCCEEEEETTTTEEEEECCC--SSCCBSCEEEEETTEEEEEC
T ss_pred             CCcCCcceeEEEEE---CCEEEEECCCCCCCCcc--cccceEEEeCCCCCeEEECCCc--cchhhcceEEEECCEEEEEe
Confidence            99999999999888   89999999986543211  1278999999999999999865  68999999999999999999


Q ss_pred             CccCCCCccccCCceEEEEcCCCceEEeccCCCCCCCCCCceEEEeCCCeEEEEcCccccccccccccceeeceEEEEec
Q psy14331        177 GFHDNLREAKYYNDVHIFDLETYAWKKIEPLGAGPAPRSGCQMAATPDGKILISGGYSKQSVKKDVDKGIVHTDTFLLTP  256 (265)
Q Consensus       177 G~~~~~~~~~~~~~v~~y~~~~~~W~~~~~~~~~p~~~~~~~~~~~~~~~iyi~GG~~~~~~~~~~~~~~~~~~~w~~~~  256 (265)
                      |.+..    ...+++++||+.+++|+.+..   +|.+|..|+++++ +++|||+||.+...         ..+++|.||+
T Consensus       208 G~~~~----~~~~~~~~yd~~~~~W~~~~~---~p~~r~~~~~~~~-~~~i~v~GG~~~~~---------~~~~~~~yd~  270 (306)
T 3ii7_A          208 GQNGL----GGLDNVEYYDIKLNEWKMVSP---MPWKGVTVKCAAV-GSIVYVLAGFQGVG---------RLGHILEYNT  270 (306)
T ss_dssp             CEETT----EEBCCEEEEETTTTEEEECCC---CSCCBSCCEEEEE-TTEEEEEECBCSSS---------BCCEEEEEET
T ss_pred             CCCCC----CCCceEEEeeCCCCcEEECCC---CCCCccceeEEEE-CCEEEEEeCcCCCe---------eeeeEEEEcC
Confidence            98765    347899999999999999987   5889999998887 89999999987543         4567889999


Q ss_pred             Ccccccc
Q psy14331        257 DSKTLRS  263 (265)
Q Consensus       257 ~~~~w~~  263 (265)
                      ++++|+.
T Consensus       271 ~~~~W~~  277 (306)
T 3ii7_A          271 ETDKWVA  277 (306)
T ss_dssp             TTTEEEE
T ss_pred             CCCeEEe
Confidence            9988875

>1zgk_A Kelch-like ECH-associated protein 1; beta-propeller, kelch repeat motif, protein binding; HET: MSE; 1.35A {Homo sapiens} SCOP: b.68.11.1 PDB: 2flu_X 1u6d_X 1x2j_A 1x2r_A 2dyh_A 2z32_A 3ade_A

Probab=100.00  E-value=2.8e-36  Score=247.98  Aligned_cols=205  Identities=17%  Similarity=0.222  Sum_probs=175.3

Q ss_pred             HHHHHHHhhcccceEEEeccCCCCCCCceeeEEecCCCEEEEECcEEeCCCceeeCCCcccCceEEEEe----eecCCCC
Q psy14331         23 IVRDIEAEEKRKNKVIEKVVPEPTRRANFSFLAHPDKDQLILFGGEFYDGQKFVFGSPKALDHLILMNL----FVSAPGA   98 (265)
Q Consensus        23 ~~~~~~~~d~~~~~w~~~~~~~p~~r~~~~~~~~~~~~~lyv~GG~~~~~~~~~~~~~~~~~~~~~yd~----w~~~~~~   98 (265)
                      .+++++.||+.+++|.. .+++|.+|.+|+++++  +++||++||..........     ++++++||+    |...+++
T Consensus        37 ~~~~~~~~d~~~~~W~~-~~~~p~~r~~~~~~~~--~~~lyv~GG~~~~~~~~~~-----~~~~~~~d~~~~~W~~~~~~  108 (308)
T 1zgk_A           37 SLSYLEAYNPSNGTWLR-LADLQVPRSGLAGCVV--GGLLYAVGGRNNSPDGNTD-----SSALDCYNPMTNQWSPCAPM  108 (308)
T ss_dssp             BCCCEEEEETTTTEEEE-CCCCSSCCBSCEEEEE--TTEEEEECCEEEETTEEEE-----CCCEEEEETTTTEEEECCCC
T ss_pred             CcceEEEEcCCCCeEeE-CCCCCcccccceEEEE--CCEEEEECCCcCCCCCCee-----cceEEEECCCCCeEeECCCC
Confidence            55679999999999999 6889999999998886  9999999996422122222     799999999    9999999


Q ss_pred             CCCccccceEEEecCCCEEEEEcCcccCCCccccccCCceeEEEcCCCcEEEEecCCCCCCCcCceEEEECCEEEEEcCc
Q psy14331         99 PPPRCSHQMVALSADKGQLWMFGGEFSSASESQFHHYKDLWVFRMGEKKWEKIVCKDTPPSRSGHRMIALKKHLVVFGGF  178 (265)
Q Consensus        99 p~~r~~~~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~~~yd~~~~~W~~~~~~~~p~~~~~~~~~~~~~~iyv~GG~  178 (265)
                      |.+|..|+++.+   +++||++||.....      ..+++++||+.+++|+.++++  |.+|..|+++.++++||++||.
T Consensus       109 p~~r~~~~~~~~---~~~iyv~GG~~~~~------~~~~~~~yd~~~~~W~~~~~~--p~~r~~~~~~~~~~~iyv~GG~  177 (308)
T 1zgk_A          109 SVPRNRIGVGVI---DGHIYAVGGSHGCI------HHNSVERYEPERDEWHLVAPM--LTRRIGVGVAVLNRLLYAVGGF  177 (308)
T ss_dssp             SSCCBTCEEEEE---TTEEEEECCEETTE------ECCCEEEEETTTTEEEECCCC--SSCCBSCEEEEETTEEEEECCB
T ss_pred             CcCccccEEEEE---CCEEEEEcCCCCCc------ccccEEEECCCCCeEeECCCC--CccccceEEEEECCEEEEEeCC
Confidence            999999999988   89999999986532      378999999999999999865  6899999999999999999998


Q ss_pred             cCCCCccccCCceEEEEcCCCceEEeccCCCCCCCCCCceEEEeCCCeEEEEcCccccccccccccceeeceEEEEecCc
Q psy14331        179 HDNLREAKYYNDVHIFDLETYAWKKIEPLGAGPAPRSGCQMAATPDGKILISGGYSKQSVKKDVDKGIVHTDTFLLTPDS  258 (265)
Q Consensus       179 ~~~~~~~~~~~~v~~y~~~~~~W~~~~~~~~~p~~~~~~~~~~~~~~~iyi~GG~~~~~~~~~~~~~~~~~~~w~~~~~~  258 (265)
                      +...    .++++++||+.+++|+.+..   +|.+|..|+++.+ +++|||+||.+...         ..+++|.||+++
T Consensus       178 ~~~~----~~~~~~~yd~~~~~W~~~~~---~p~~r~~~~~~~~-~~~iyv~GG~~~~~---------~~~~v~~yd~~~  240 (308)
T 1zgk_A          178 DGTN----RLNSAECYYPERNEWRMITA---MNTIRSGAGVCVL-HNCIYAAGGYDGQD---------QLNSVERYDVET  240 (308)
T ss_dssp             CSSC----BCCCEEEEETTTTEEEECCC---CSSCCBSCEEEEE-TTEEEEECCBCSSS---------BCCCEEEEETTT
T ss_pred             CCCC----cCceEEEEeCCCCeEeeCCC---CCCccccceEEEE-CCEEEEEeCCCCCC---------ccceEEEEeCCC
Confidence            7653    37899999999999999987   4889999998877 89999999987543         356788888888


Q ss_pred             ccccc
Q psy14331        259 KTLRS  263 (265)
Q Consensus       259 ~~w~~  263 (265)
                      ++|+.
T Consensus       241 ~~W~~  245 (308)
T 1zgk_A          241 ETWTF  245 (308)
T ss_dssp             TEEEE
T ss_pred             CcEEE
Confidence            88875

>2xn4_A Kelch-like protein 2; structural protein, cytoskeleton; 1.99A {Homo sapiens}

Probab=100.00  E-value=3.6e-36  Score=246.61  Aligned_cols=203  Identities=18%  Similarity=0.287  Sum_probs=173.6

Q ss_pred             HHHHHHHhhcccceEEEeccCCCCCCCceeeEEecCCCEEEEECcEEeCCCceeeCCCcccCceEEEEe----eecCCCC
Q psy14331         23 IVRDIEAEEKRKNKVIEKVVPEPTRRANFSFLAHPDKDQLILFGGEFYDGQKFVFGSPKALDHLILMNL----FVSAPGA   98 (265)
Q Consensus        23 ~~~~~~~~d~~~~~w~~~~~~~p~~r~~~~~~~~~~~~~lyv~GG~~~~~~~~~~~~~~~~~~~~~yd~----w~~~~~~   98 (265)
                      .++++++||+.+++|.. .+++|.+|.+|+++++  +++||++||.  ++...       ++++++||+    |...+++
T Consensus        28 ~~~~~~~~d~~~~~W~~-~~~~p~~r~~~~~~~~--~~~lyv~GG~--~~~~~-------~~~~~~~d~~~~~W~~~~~~   95 (302)
T 2xn4_A           28 AIRSVECYDFKEERWHQ-VAELPSRRCRAGMVYM--AGLVFAVGGF--NGSLR-------VRTVDSYDPVKDQWTSVANM   95 (302)
T ss_dssp             BCCCEEEEETTTTEEEE-ECCCSSCCBSCEEEEE--TTEEEEESCB--CSSSB-------CCCEEEEETTTTEEEEECCC
T ss_pred             CCCcEEEEcCcCCcEeE-cccCCcccccceEEEE--CCEEEEEeCc--CCCcc-------ccceEEECCCCCceeeCCCC
Confidence            45678999999999998 6789999999998886  9999999995  32221       789999999    9999999


Q ss_pred             CCCccccceEEEecCCCEEEEEcCcccCCCccccccCCceeEEEcCCCcEEEEecCCCCCCCcCceEEEECCEEEEEcCc
Q psy14331         99 PPPRCSHQMVALSADKGQLWMFGGEFSSASESQFHHYKDLWVFRMGEKKWEKIVCKDTPPSRSGHRMIALKKHLVVFGGF  178 (265)
Q Consensus        99 p~~r~~~~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~~~yd~~~~~W~~~~~~~~p~~~~~~~~~~~~~~iyv~GG~  178 (265)
                      |.+|..|+++.+   +++||++||.....      .++++++||+.+++|+.++++  |.+|..|+++.++++||++||.
T Consensus        96 p~~r~~~~~~~~---~~~iyv~GG~~~~~------~~~~~~~~d~~~~~W~~~~~~--p~~r~~~~~~~~~~~iyv~GG~  164 (302)
T 2xn4_A           96 RDRRSTLGAAVL---NGLLYAVGGFDGST------GLSSVEAYNIKSNEWFHVAPM--NTRRSSVGVGVVGGLLYAVGGY  164 (302)
T ss_dssp             SSCCBSCEEEEE---TTEEEEEEEECSSC------EEEEEEEEETTTTEEEEECCC--SSCCBSCEEEEETTEEEEECCE
T ss_pred             CccccceEEEEE---CCEEEEEcCCCCCc------cCceEEEEeCCCCeEeecCCC--CCcccCceEEEECCEEEEEeCC
Confidence            999999999988   89999999975432      368999999999999999876  5899999999999999999998


Q ss_pred             cCCCCccccCCceEEEEcCCCceEEeccCCCCCCCCCCceEEEeCCCeEEEEcCccccccccccccceeeceEEEEecCc
Q psy14331        179 HDNLREAKYYNDVHIFDLETYAWKKIEPLGAGPAPRSGCQMAATPDGKILISGGYSKQSVKKDVDKGIVHTDTFLLTPDS  258 (265)
Q Consensus       179 ~~~~~~~~~~~~v~~y~~~~~~W~~~~~~~~~p~~~~~~~~~~~~~~~iyi~GG~~~~~~~~~~~~~~~~~~~w~~~~~~  258 (265)
                      +....  ...+++++||+.+++|+.+..   +|.+|..|+++++ +++|||+||.+...         ..+++|+||+++
T Consensus       165 ~~~~~--~~~~~~~~yd~~~~~W~~~~~---~p~~r~~~~~~~~-~~~iyv~GG~~~~~---------~~~~~~~yd~~~  229 (302)
T 2xn4_A          165 DVASR--QCLSTVECYNATTNEWTYIAE---MSTRRSGAGVGVL-NNLLYAVGGHDGPL---------VRKSVEVYDPTT  229 (302)
T ss_dssp             ETTTT--EECCCEEEEETTTTEEEEECC---CSSCCBSCEEEEE-TTEEEEECCBSSSS---------BCCCEEEEETTT
T ss_pred             CCCCC--ccccEEEEEeCCCCcEEECCC---CccccccccEEEE-CCEEEEECCCCCCc---------ccceEEEEeCCC
Confidence            65431  347899999999999999987   4888999998877 89999999986543         356788888888


Q ss_pred             ccccc
Q psy14331        259 KTLRS  263 (265)
Q Consensus       259 ~~w~~  263 (265)
                      ++|+.
T Consensus       230 ~~W~~  234 (302)
T 2xn4_A          230 NAWRQ  234 (302)
T ss_dssp             TEEEE
T ss_pred             CCEee
Confidence            88874

>4asc_A Kelch repeat and BTB domain-containing protein 5; protein binding, cytoskeleton; 1.78A {Homo sapiens}

Probab=100.00  E-value=1.1e-35  Score=245.23  Aligned_cols=208  Identities=17%  Similarity=0.348  Sum_probs=170.7

Q ss_pred             HHHHHhhcccceEEEeccCCCCCCCceeeEEecCCCEEEEECcEEeCCC--ceeeCCCcccCceEEEEe----eecCCCC
Q psy14331         25 RDIEAEEKRKNKVIEKVVPEPTRRANFSFLAHPDKDQLILFGGEFYDGQ--KFVFGSPKALDHLILMNL----FVSAPGA   98 (265)
Q Consensus        25 ~~~~~~d~~~~~w~~~~~~~p~~r~~~~~~~~~~~~~lyv~GG~~~~~~--~~~~~~~~~~~~~~~yd~----w~~~~~~   98 (265)
                      ++++.||+.+++|.....+.|.+|.+|+++++  +++||++||...++.  ....     .+++++||+    |...+++
T Consensus        13 ~~~~~yd~~~~~W~~~~~~~p~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~-----~~~~~~~d~~~~~W~~~~~~   85 (315)
T 4asc_A           13 EGAVAYDPAANECYCASLSSQVPKNHVSLVTK--ENQVFVAGGLFYNEDNKEDPM-----SAYFLQFDHLDSEWLGMPPL   85 (315)
T ss_dssp             TEEEEEETTTTEEEEEECCCCSCSSEEEEECT--TCCEEEEEEEEECSSCSSSCE-----EEEEEEEETTTTEEEECCCB
T ss_pred             CceEEECCCCCeEecCCCCCCCCccceEEEEE--CCEEEEEcCcccCCCCCcccc-----ccceEEecCCCCeEEECCCC
Confidence            35889999999998733344778999998885  999999999743221  1111     567999999    9999999


Q ss_pred             CCCccccceEEEecCCCEEEEEcCcccCCCccccccCCceeEEEcCCCcEEEEecCCCCCCCcCceEEEECCEEEEEcCc
Q psy14331         99 PPPRCSHQMVALSADKGQLWMFGGEFSSASESQFHHYKDLWVFRMGEKKWEKIVCKDTPPSRSGHRMIALKKHLVVFGGF  178 (265)
Q Consensus        99 p~~r~~~~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~~~yd~~~~~W~~~~~~~~p~~~~~~~~~~~~~~iyv~GG~  178 (265)
                      |.+|..|+++.+   +++||++||.......   ...+++++||+.+++|+.++++  |.+|..|+++.++++||++||.
T Consensus        86 p~~r~~~~~~~~---~~~lyv~GG~~~~~~~---~~~~~~~~~d~~~~~W~~~~~~--p~~r~~~~~~~~~~~iyv~GG~  157 (315)
T 4asc_A           86 PSPRCLFGLGEA---LNSIYVVGGREIKDGE---RCLDSVMCYDRLSFKWGESDPL--PYVVYGHTVLSHMDLVYVIGGK  157 (315)
T ss_dssp             SSCEESCEEEEE---TTEEEEECCEESSTTC---CBCCCEEEEETTTTEEEECCCC--SSCCBSCEEEEETTEEEEECCB
T ss_pred             CcchhceeEEEE---CCEEEEEeCCcCCCCC---cccceEEEECCCCCcEeECCCC--CCcccceeEEEECCEEEEEeCC
Confidence            999999999988   8999999997532111   3479999999999999999865  6899999999999999999998


Q ss_pred             cCCCCccccCCceEEEEcCCCceEEeccCCCCCCCCCCceEEEeCCCeEEEEcCccccccccccccceeeceEEEEecCc
Q psy14331        179 HDNLREAKYYNDVHIFDLETYAWKKIEPLGAGPAPRSGCQMAATPDGKILISGGYSKQSVKKDVDKGIVHTDTFLLTPDS  258 (265)
Q Consensus       179 ~~~~~~~~~~~~v~~y~~~~~~W~~~~~~~~~p~~~~~~~~~~~~~~~iyi~GG~~~~~~~~~~~~~~~~~~~w~~~~~~  258 (265)
                      ....   ...+++++||+.+++|+.+.+   +|.+|..|+++++ +++|||+||.+...         ..+++|.||+++
T Consensus       158 ~~~~---~~~~~~~~yd~~~~~W~~~~~---~p~~r~~~~~~~~-~~~iyv~GG~~~~~---------~~~~~~~yd~~~  221 (315)
T 4asc_A          158 GSDR---KCLNKMCVYDPKKFEWKELAP---MQTARSLFGATVH-DGRIIVAAGVTDTG---------LTSSAEVYSITD  221 (315)
T ss_dssp             CTTS---CBCCCEEEEETTTTEEEECCC---CSSCCBSCEEEEE-TTEEEEEEEECSSS---------EEEEEEEEETTT
T ss_pred             CCCC---cccceEEEEeCCCCeEEECCC---CCCchhceEEEEE-CCEEEEEeccCCCC---------ccceEEEEECCC
Confidence            4332   458899999999999999987   4889999998877 89999999987553         456788888888


Q ss_pred             ccccc
Q psy14331        259 KTLRS  263 (265)
Q Consensus       259 ~~w~~  263 (265)
                      ++|+.
T Consensus       222 ~~W~~  226 (315)
T 4asc_A          222 NKWAP  226 (315)
T ss_dssp             TEEEE
T ss_pred             CeEEE
Confidence            88874

>2vpj_A Kelch-like protein 12; adaptor protein, WNT signaling pathway, protein-binding, UBI degradation, UBL conjugation pathway, CUL3, kelch repeat; 1.85A {Homo sapiens}

Probab=100.00  E-value=7.5e-36  Score=244.54  Aligned_cols=202  Identities=17%  Similarity=0.268  Sum_probs=174.0

Q ss_pred             HHHHHHHHhhcccce---EEEeccCCCCCCCceeeEEecCCCEEEEECcEEeCCCceeeCCCcccCceEEEEe----eec
Q psy14331         22 KIVRDIEAEEKRKNK---VIEKVVPEPTRRANFSFLAHPDKDQLILFGGEFYDGQKFVFGSPKALDHLILMNL----FVS   94 (265)
Q Consensus        22 ~~~~~~~~~d~~~~~---w~~~~~~~p~~r~~~~~~~~~~~~~lyv~GG~~~~~~~~~~~~~~~~~~~~~yd~----w~~   94 (265)
                      ...++++.||+.+++   |.. .+++|.+|..|+++++  +++||++||..  +...       ++++++||+    |..
T Consensus        75 ~~~~~~~~~d~~~~~~~~W~~-~~~~p~~r~~~~~~~~--~~~lyv~GG~~--~~~~-------~~~~~~~d~~~~~W~~  142 (301)
T 2vpj_A           75 SRLSSVECLDYTADEDGVWYS-VAPMNVRRGLAGATTL--GDMIYVSGGFD--GSRR-------HTSMERYDPNIDQWSM  142 (301)
T ss_dssp             CBCCCEEEEETTCCTTCCCEE-ECCCSSCCBSCEEEEE--TTEEEEECCBC--SSCB-------CCEEEEEETTTTEEEE
T ss_pred             ccCceEEEEECCCCCCCeeEE-CCCCCCCccceeEEEE--CCEEEEEcccC--CCcc-------cceEEEEcCCCCeEEE
Confidence            355679999999999   999 7889999999999987  89999999953  2221       689999999    999


Q ss_pred             CCCCCCCccccceEEEecCCCEEEEEcCcccCCCccccccCCceeEEEcCCCcEEEEecCCCCCCCcCceEEEECCEEEE
Q psy14331         95 APGAPPPRCSHQMVALSADKGQLWMFGGEFSSASESQFHHYKDLWVFRMGEKKWEKIVCKDTPPSRSGHRMIALKKHLVV  174 (265)
Q Consensus        95 ~~~~p~~r~~~~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~~~yd~~~~~W~~~~~~~~p~~~~~~~~~~~~~~iyv  174 (265)
                      .+++|.+|..|+++.+   +++||++||.....      ..+++++||+.+++|+.++++  |.+|..|+++.++++||+
T Consensus       143 ~~~~p~~r~~~~~~~~---~~~iyv~GG~~~~~------~~~~~~~~d~~~~~W~~~~~~--p~~r~~~~~~~~~~~i~v  211 (301)
T 2vpj_A          143 LGDMQTAREGAGLVVA---SGVIYCLGGYDGLN------ILNSVEKYDPHTGHWTNVTPM--ATKRSGAGVALLNDHIYV  211 (301)
T ss_dssp             EEECSSCCBSCEEEEE---TTEEEEECCBCSSC------BCCCEEEEETTTTEEEEECCC--SSCCBSCEEEEETTEEEE
T ss_pred             CCCCCCCcccceEEEE---CCEEEEECCCCCCc------ccceEEEEeCCCCcEEeCCCC--CcccccceEEEECCEEEE
Confidence            9999999999999988   89999999975432      378999999999999999765  689999999999999999


Q ss_pred             EcCccCCCCccccCCceEEEEcCCCceEEeccCCCCCCCCCCceEEEeCCCeEEEEcCccccccccccccceeeceEEEE
Q psy14331        175 FGGFHDNLREAKYYNDVHIFDLETYAWKKIEPLGAGPAPRSGCQMAATPDGKILISGGYSKQSVKKDVDKGIVHTDTFLL  254 (265)
Q Consensus       175 ~GG~~~~~~~~~~~~~v~~y~~~~~~W~~~~~~~~~p~~~~~~~~~~~~~~~iyi~GG~~~~~~~~~~~~~~~~~~~w~~  254 (265)
                      +||.+..    ...+++++||+.+++|+.+..   +|.+|..|+++.+ +++|||+||.+...         ..+++|.|
T Consensus       212 ~GG~~~~----~~~~~v~~yd~~~~~W~~~~~---~p~~r~~~~~~~~-~~~i~v~GG~~~~~---------~~~~v~~y  274 (301)
T 2vpj_A          212 VGGFDGT----AHLSSVEAYNIRTDSWTTVTS---MTTPRCYVGATVL-RGRLYAIAGYDGNS---------LLSSIECY  274 (301)
T ss_dssp             ECCBCSS----SBCCCEEEEETTTTEEEEECC---CSSCCBSCEEEEE-TTEEEEECCBCSSS---------BEEEEEEE
T ss_pred             EeCCCCC----cccceEEEEeCCCCcEEECCC---CCCcccceeEEEE-CCEEEEEcCcCCCc---------ccccEEEE
Confidence            9998764    237899999999999999987   5888999998877 89999999986543         45678888


Q ss_pred             ecCcccccc
Q psy14331        255 TPDSKTLRS  263 (265)
Q Consensus       255 ~~~~~~w~~  263 (265)
                      |+++++|+.
T Consensus       275 d~~~~~W~~  283 (301)
T 2vpj_A          275 DPIIDSWEV  283 (301)
T ss_dssp             ETTTTEEEE
T ss_pred             cCCCCeEEE
Confidence            888888874

>2vpj_A Kelch-like protein 12; adaptor protein, WNT signaling pathway, protein-binding, UBI degradation, UBL conjugation pathway, CUL3, kelch repeat; 1.85A {Homo sapiens}

Probab=100.00  E-value=1.5e-35  Score=242.72  Aligned_cols=202  Identities=15%  Similarity=0.258  Sum_probs=173.7

Q ss_pred             HHHHHHHHhhcccceEEEeccCCCCCCCceeeEEecCCCEEEEECcEEeCCCceeeCCCcccCceEEEEe-------eec
Q psy14331         22 KIVRDIEAEEKRKNKVIEKVVPEPTRRANFSFLAHPDKDQLILFGGEFYDGQKFVFGSPKALDHLILMNL-------FVS   94 (265)
Q Consensus        22 ~~~~~~~~~d~~~~~w~~~~~~~p~~r~~~~~~~~~~~~~lyv~GG~~~~~~~~~~~~~~~~~~~~~yd~-------w~~   94 (265)
                      ..+++++.||+.+++|.. .+++|.+|.+|+++++  +++||++||..  +..       .++++++||+       |..
T Consensus        28 ~~~~~~~~~d~~~~~W~~-~~~~p~~r~~~~~~~~--~~~l~v~GG~~--~~~-------~~~~~~~~d~~~~~~~~W~~   95 (301)
T 2vpj_A           28 SPIDVVEKYDPKTQEWSF-LPSITRKRRYVASVSL--HDRIYVIGGYD--GRS-------RLSSVECLDYTADEDGVWYS   95 (301)
T ss_dssp             EECCCEEEEETTTTEEEE-CCCCSSCCBSCEEEEE--TTEEEEECCBC--SSC-------BCCCEEEEETTCCTTCCCEE
T ss_pred             cceeEEEEEcCCCCeEEe-CCCCChhhccccEEEE--CCEEEEEcCCC--CCc-------cCceEEEEECCCCCCCeeEE
Confidence            456789999999999998 7788999999999886  89999999953  221       1789999998       888


Q ss_pred             CCCCCCCccccceEEEecCCCEEEEEcCcccCCCccccccCCceeEEEcCCCcEEEEecCCCCCCCcCceEEEECCEEEE
Q psy14331         95 APGAPPPRCSHQMVALSADKGQLWMFGGEFSSASESQFHHYKDLWVFRMGEKKWEKIVCKDTPPSRSGHRMIALKKHLVV  174 (265)
Q Consensus        95 ~~~~p~~r~~~~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~~~yd~~~~~W~~~~~~~~p~~~~~~~~~~~~~~iyv  174 (265)
                      .+++|.+|..|+++.+   +++||++||.....      ..+++++||+.+++|+.++++  |.+|..|+++.++++||+
T Consensus        96 ~~~~p~~r~~~~~~~~---~~~lyv~GG~~~~~------~~~~~~~~d~~~~~W~~~~~~--p~~r~~~~~~~~~~~iyv  164 (301)
T 2vpj_A           96 VAPMNVRRGLAGATTL---GDMIYVSGGFDGSR------RHTSMERYDPNIDQWSMLGDM--QTAREGAGLVVASGVIYC  164 (301)
T ss_dssp             ECCCSSCCBSCEEEEE---TTEEEEECCBCSSC------BCCEEEEEETTTTEEEEEEEC--SSCCBSCEEEEETTEEEE
T ss_pred             CCCCCCCccceeEEEE---CCEEEEEcccCCCc------ccceEEEEcCCCCeEEECCCC--CCCcccceEEEECCEEEE
Confidence            8999999999999988   89999999986432      378999999999999999876  589999999999999999


Q ss_pred             EcCccCCCCccccCCceEEEEcCCCceEEeccCCCCCCCCCCceEEEeCCCeEEEEcCccccccccccccceeeceEEEE
Q psy14331        175 FGGFHDNLREAKYYNDVHIFDLETYAWKKIEPLGAGPAPRSGCQMAATPDGKILISGGYSKQSVKKDVDKGIVHTDTFLL  254 (265)
Q Consensus       175 ~GG~~~~~~~~~~~~~v~~y~~~~~~W~~~~~~~~~p~~~~~~~~~~~~~~~iyi~GG~~~~~~~~~~~~~~~~~~~w~~  254 (265)
                      +||.+..    ...+++++||+.+++|+.+..   +|.+|..|+++.+ +++|||+||.+...         ..+++|.|
T Consensus       165 ~GG~~~~----~~~~~~~~~d~~~~~W~~~~~---~p~~r~~~~~~~~-~~~i~v~GG~~~~~---------~~~~v~~y  227 (301)
T 2vpj_A          165 LGGYDGL----NILNSVEKYDPHTGHWTNVTP---MATKRSGAGVALL-NDHIYVVGGFDGTA---------HLSSVEAY  227 (301)
T ss_dssp             ECCBCSS----CBCCCEEEEETTTTEEEEECC---CSSCCBSCEEEEE-TTEEEEECCBCSSS---------BCCCEEEE
T ss_pred             ECCCCCC----cccceEEEEeCCCCcEEeCCC---CCcccccceEEEE-CCEEEEEeCCCCCc---------ccceEEEE
Confidence            9998654    357899999999999999987   4889999998877 89999999987543         25678888


Q ss_pred             ecCcccccc
Q psy14331        255 TPDSKTLRS  263 (265)
Q Consensus       255 ~~~~~~w~~  263 (265)
                      |+++++|+.
T Consensus       228 d~~~~~W~~  236 (301)
T 2vpj_A          228 NIRTDSWTT  236 (301)
T ss_dssp             ETTTTEEEE
T ss_pred             eCCCCcEEE
Confidence            888888874

>2woz_A Kelch repeat and BTB domain-containing protein 10; protein binding, invasion and metastasis, UBL conjugation pathway, UBL protein folding; 2.00A {Rattus norvegicus}

Probab=100.00  E-value=7.5e-35  Score=240.50  Aligned_cols=205  Identities=20%  Similarity=0.370  Sum_probs=167.9

Q ss_pred             HHHhhcccceEEEeccCCCCCCCceeeEEecCCCEEEEECcEEeCCCc--eeeCCCcccCceEEEEe----eecCCCCCC
Q psy14331         27 IEAEEKRKNKVIEKVVPEPTRRANFSFLAHPDKDQLILFGGEFYDGQK--FVFGSPKALDHLILMNL----FVSAPGAPP  100 (265)
Q Consensus        27 ~~~~d~~~~~w~~~~~~~p~~r~~~~~~~~~~~~~lyv~GG~~~~~~~--~~~~~~~~~~~~~~yd~----w~~~~~~p~  100 (265)
                      ++.||+.+++|.....+.|.+|.+|++++.  +++||++||...+...  ...     .+++++||+    |...+++|.
T Consensus        26 ~~~yd~~~~~W~~~~~~~~~~r~~~~~~~~--~~~lyv~GG~~~~~~~~~~~~-----~~~~~~~d~~~~~W~~~~~~p~   98 (318)
T 2woz_A           26 AVAYDPMENECYLTALAEQIPRNHSSIVTQ--QNQVYVVGGLYVDEENKDQPL-----QSYFFQLDNVSSEWVGLPPLPS   98 (318)
T ss_dssp             EEEEETTTTEEEEEEECTTSCSSEEEEECS--SSCEEEEESSCC-------CC-----CBEEEEEETTTTEEEECSCBSS
T ss_pred             eEEECCCCCceecccCCccCCccceEEEEE--CCEEEEECCcccCccccCCCc-----cccEEEEeCCCCcEEECCCCCc
Confidence            689999999998843355688999888875  9999999995322211  111     356999999    999999999


Q ss_pred             CccccceEEEecCCCEEEEEcCcccCCCccccccCCceeEEEcCCCcEEEEecCCCCCCCcCceEEEECCEEEEEcCccC
Q psy14331        101 PRCSHQMVALSADKGQLWMFGGEFSSASESQFHHYKDLWVFRMGEKKWEKIVCKDTPPSRSGHRMIALKKHLVVFGGFHD  180 (265)
Q Consensus       101 ~r~~~~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~~~yd~~~~~W~~~~~~~~p~~~~~~~~~~~~~~iyv~GG~~~  180 (265)
                      +|..|+++.+   +++||++||......    ..++++++||+.+++|+.++++  |.+|..|++++.+++||++||...
T Consensus        99 ~r~~~~~~~~---~~~iyv~GG~~~~~~----~~~~~~~~yd~~~~~W~~~~~~--p~~r~~~~~~~~~~~iyv~GG~~~  169 (318)
T 2woz_A           99 ARCLFGLGEV---DDKIYVVAGKDLQTE----ASLDSVLCYDPVAAKWSEVKNL--PIKVYGHNVISHNGMIYCLGGKTD  169 (318)
T ss_dssp             CBCSCEEEEE---TTEEEEEEEEBTTTC----CEEEEEEEEETTTTEEEEECCC--SSCEESCEEEEETTEEEEECCEES
T ss_pred             cccccceEEE---CCEEEEEcCccCCCC----cccceEEEEeCCCCCEeECCCC--CCcccccEEEEECCEEEEEcCCCC
Confidence            9999999988   899999999863221    3478999999999999999865  689999999999999999999854


Q ss_pred             CCCccccCCceEEEEcCCCceEEeccCCCCCCCCCCceEEEeCCCeEEEEcCccccccccccccceeeceEEEEecCccc
Q psy14331        181 NLREAKYYNDVHIFDLETYAWKKIEPLGAGPAPRSGCQMAATPDGKILISGGYSKQSVKKDVDKGIVHTDTFLLTPDSKT  260 (265)
Q Consensus       181 ~~~~~~~~~~v~~y~~~~~~W~~~~~~~~~p~~~~~~~~~~~~~~~iyi~GG~~~~~~~~~~~~~~~~~~~w~~~~~~~~  260 (265)
                      ..   ...+++++||+.+++|+.+..   .|.+|..|+++++ +++|||+||.+...         ..+++|+||+++++
T Consensus       170 ~~---~~~~~~~~yd~~~~~W~~~~~---~p~~r~~~~~~~~-~~~iyv~GG~~~~~---------~~~~~~~yd~~~~~  233 (318)
T 2woz_A          170 DK---KCTNRVFIYNPKKGDWKDLAP---MKTPRSMFGVAIH-KGKIVIAGGVTEDG---------LSASVEAFDLKTNK  233 (318)
T ss_dssp             SS---CBCCCEEEEETTTTEEEEECC---CSSCCBSCEEEEE-TTEEEEEEEEETTE---------EEEEEEEEETTTCC
T ss_pred             CC---CccceEEEEcCCCCEEEECCC---CCCCcccceEEEE-CCEEEEEcCcCCCC---------ccceEEEEECCCCe
Confidence            32   447899999999999999987   4889999998877 89999999987543         46678899999998


Q ss_pred             ccc
Q psy14331        261 LRS  263 (265)
Q Consensus       261 w~~  263 (265)
                      |+.
T Consensus       234 W~~  236 (318)
T 2woz_A          234 WEV  236 (318)
T ss_dssp             EEE
T ss_pred             EEE
Confidence            875

>2uvk_A YJHT; unknown function, hypothetical protein, sialic acid metabolism, kelch repeat, beta-propeller; HET: MSE; 1.50A {Escherichia coli}

Probab=100.00  E-value=4.8e-33  Score=233.17  Aligned_cols=219  Identities=16%  Similarity=0.167  Sum_probs=164.9

Q ss_pred             HHHHHHHHhhcccceEEEeccCCC-CCCCceeeEEecCCCEEEEECcEEeCCCcee------------------------
Q psy14331         22 KIVRDIEAEEKRKNKVIEKVVPEP-TRRANFSFLAHPDKDQLILFGGEFYDGQKFV------------------------   76 (265)
Q Consensus        22 ~~~~~~~~~d~~~~~w~~~~~~~p-~~r~~~~~~~~~~~~~lyv~GG~~~~~~~~~------------------------   76 (265)
                      ..+++++.||+.+++|.. .++++ .+|.+|++++.  +++||++||.........                        
T Consensus        83 ~~~~~v~~yd~~~~~W~~-~~~~~p~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  159 (357)
T 2uvk_A           83 QVFNDVHKYNPKTNSWVK-LMSHAPMGMAGHVTFVH--NGKAYVTGGVNQNIFNGYFEDLNEAGKDSTAIDKINAHYFDK  159 (357)
T ss_dssp             EECCCEEEEETTTTEEEE-CSCCCSSCCSSEEEEEE--TTEEEEEECCCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHSS
T ss_pred             eeeccEEEEeCCCCcEEE-CCCCCCcccccceEEEE--CCEEEEEeCcCCCcCcccccchhhcCCcccchhhhhhhhccc
Confidence            456789999999999999 55555 99999998886  999999999532110000                        


Q ss_pred             -eCCCcccCceEEEEe----eecCCCCCCCccc-cceEEEecCCCEEEEEcCcccCCCccccccCCceeEEEc--CCCcE
Q psy14331         77 -FGSPKALDHLILMNL----FVSAPGAPPPRCS-HQMVALSADKGQLWMFGGEFSSASESQFHHYKDLWVFRM--GEKKW  148 (265)
Q Consensus        77 -~~~~~~~~~~~~yd~----w~~~~~~p~~r~~-~~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~~~yd~--~~~~W  148 (265)
                       ......++++++||+    |+..+++|.+|.. |+++.+   +++||++||.....     ...+++++||+  .+++|
T Consensus       160 ~~~~~~~~~~v~~yd~~~~~W~~~~~~p~~~~~~~~~~~~---~~~iyv~GG~~~~~-----~~~~~v~~~d~d~~~~~W  231 (357)
T 2uvk_A          160 KAEDYFFNKFLLSFDPSTQQWSYAGESPWYGTAGAAVVNK---GDKTWLINGEAKPG-----LRTDAVFELDFTGNNLKW  231 (357)
T ss_dssp             CGGGGCCCCEEEEEETTTTEEEEEEECSSCCCBSCEEEEE---TTEEEEECCEEETT-----EECCCEEEEECC---CEE
T ss_pred             cccccCCcccEEEEeCCCCcEEECCCCCCCCcccccEEEE---CCEEEEEeeecCCC-----cccCceEEEEecCCCCcE
Confidence             000012689999999    9999999987665 887777   89999999986443     23688999986  89999


Q ss_pred             EEEecCCCCCCCcCceEEEECCEEEEEcCccCCCC-------------ccccCCceEEEEcCCCceEEeccCCCCCCCCC
Q psy14331        149 EKIVCKDTPPSRSGHRMIALKKHLVVFGGFHDNLR-------------EAKYYNDVHIFDLETYAWKKIEPLGAGPAPRS  215 (265)
Q Consensus       149 ~~~~~~~~p~~~~~~~~~~~~~~iyv~GG~~~~~~-------------~~~~~~~v~~y~~~~~~W~~~~~~~~~p~~~~  215 (265)
                      +.++.++.|.+|..|++++++++|||+||......             ....+.++++||+.+++|+.+..   +|.+|.
T Consensus       232 ~~~~~~~~~~~~~~~~~~~~~~~iyv~GG~~~~~~~~~~~~g~~~~~~~~~~~~~~~~yd~~~~~W~~~~~---~p~~r~  308 (357)
T 2uvk_A          232 NKLAPVSSPDGVAGGFAGISNDSLIFAGGAGFKGSRENYQNGKNYAHEGLKKSYSTDIHLWHNGKWDKSGE---LSQGRA  308 (357)
T ss_dssp             EECCCSSTTTCCBSCEEEEETTEEEEECCEECTTHHHHHHTTCSSTTTTCCCEECCEEEECC---CEEEEE---CSSCCB
T ss_pred             EecCCCCCCcccccceEEEECCEEEEEcCccccCCcccccccceeccccccceeeEEEEecCCCceeeCCC---CCCCcc
Confidence            99988765666778889999999999999754311             11234689999999999999987   588999


Q ss_pred             CceEEEeCCCeEEEEcCccccccccccccceeeceEEEEecCcccccc
Q psy14331        216 GCQMAATPDGKILISGGYSKQSVKKDVDKGIVHTDTFLLTPDSKTLRS  263 (265)
Q Consensus       216 ~~~~~~~~~~~iyi~GG~~~~~~~~~~~~~~~~~~~w~~~~~~~~w~~  263 (265)
                      .|+++.+ +++|||+||.+...        ...+++|.++.+.++|..
T Consensus       309 ~~~~~~~-~~~i~v~GG~~~~~--------~~~~~v~~l~~~~~~~~~  347 (357)
T 2uvk_A          309 YGVSLPW-NNSLLIIGGETAGG--------KAVTDSVLITVKDNKVTV  347 (357)
T ss_dssp             SSEEEEE-TTEEEEEEEECGGG--------CEEEEEEEEEC-CCSCEE
T ss_pred             cceeEEe-CCEEEEEeeeCCCC--------CEeeeEEEEEEcCcEeEe
Confidence            9998776 89999999987543        246889999999999875

>2uvk_A YJHT; unknown function, hypothetical protein, sialic acid metabolism, kelch repeat, beta-propeller; HET: MSE; 1.50A {Escherichia coli}

Probab=100.00  E-value=4.8e-32  Score=227.10  Aligned_cols=221  Identities=14%  Similarity=0.158  Sum_probs=162.6

Q ss_pred             HHHHHhhcc--cceEEEeccCCC-CCCCceeeEEecCCCEEEEECcEEe-CCCceeeCCCcccCceEEEEe----eecCC
Q psy14331         25 RDIEAEEKR--KNKVIEKVVPEP-TRRANFSFLAHPDKDQLILFGGEFY-DGQKFVFGSPKALDHLILMNL----FVSAP   96 (265)
Q Consensus        25 ~~~~~~d~~--~~~w~~~~~~~p-~~r~~~~~~~~~~~~~lyv~GG~~~-~~~~~~~~~~~~~~~~~~yd~----w~~~~   96 (265)
                      ++++.||+.  +++|.. .+++| .+|.+|+++++  +++|||+||... .......     ++++++||+    |...+
T Consensus        31 ~~~~~~d~~~~~~~W~~-~~~~p~~~R~~~~~~~~--~~~lyv~GG~~~~~~~~~~~-----~~~v~~yd~~~~~W~~~~  102 (357)
T 2uvk_A           31 TAWYKLDTQAKDKKWTA-LAAFPGGPRDQATSAFI--DGNLYVFGGIGKNSEGLTQV-----FNDVHKYNPKTNSWVKLM  102 (357)
T ss_dssp             TCEEEEETTSSSCCEEE-CCCCTTCCCBSCEEEEE--TTEEEEECCEEECTTSCEEE-----CCCEEEEETTTTEEEECS
T ss_pred             CeEEEEccccCCCCeeE-CCCCCCCcCccceEEEE--CCEEEEEcCCCCCCCcccee-----eccEEEEeCCCCcEEECC
Confidence            368999998  499998 77788 89999999987  999999999632 1212222     799999999    99999


Q ss_pred             CCC-CCccccceEEEecCCCEEEEEcCcccCCC----------------------------ccccccCCceeEEEcCCCc
Q psy14331         97 GAP-PPRCSHQMVALSADKGQLWMFGGEFSSAS----------------------------ESQFHHYKDLWVFRMGEKK  147 (265)
Q Consensus        97 ~~p-~~r~~~~~~~~~~~~~~iyv~GG~~~~~~----------------------------~~~~~~~~~~~~yd~~~~~  147 (265)
                      +++ .+|..|+++.+   +++||++||......                            ......++++++||+.+++
T Consensus       103 ~~~p~~r~~~~~~~~---~~~iyv~GG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~yd~~~~~  179 (357)
T 2uvk_A          103 SHAPMGMAGHVTFVH---NGKAYVTGGVNQNIFNGYFEDLNEAGKDSTAIDKINAHYFDKKAEDYFFNKFLLSFDPSTQQ  179 (357)
T ss_dssp             CCCSSCCSSEEEEEE---TTEEEEEECCCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHSSCGGGGCCCCEEEEEETTTTE
T ss_pred             CCCCcccccceEEEE---CCEEEEEeCcCCCcCcccccchhhcCCcccchhhhhhhhccccccccCCcccEEEEeCCCCc
Confidence            988 89999998887   999999999743210                            0001136899999999999


Q ss_pred             EEEEecCCCCCC-CcCceEEEECCEEEEEcCccCCCCccccCCceEEEEc--CCCceEEeccCCCCCCCCCCceEEEeCC
Q psy14331        148 WEKIVCKDTPPS-RSGHRMIALKKHLVVFGGFHDNLREAKYYNDVHIFDL--ETYAWKKIEPLGAGPAPRSGCQMAATPD  224 (265)
Q Consensus       148 W~~~~~~~~p~~-~~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~v~~y~~--~~~~W~~~~~~~~~p~~~~~~~~~~~~~  224 (265)
                      |+.+.++  |.+ +..|+++.++++||+|||.....   ...+++++||+  .+++|+.+..++ .|.+|..|+++++ +
T Consensus       180 W~~~~~~--p~~~~~~~~~~~~~~~iyv~GG~~~~~---~~~~~v~~~d~d~~~~~W~~~~~~~-~~~~~~~~~~~~~-~  252 (357)
T 2uvk_A          180 WSYAGES--PWYGTAGAAVVNKGDKTWLINGEAKPG---LRTDAVFELDFTGNNLKWNKLAPVS-SPDGVAGGFAGIS-N  252 (357)
T ss_dssp             EEEEEEC--SSCCCBSCEEEEETTEEEEECCEEETT---EECCCEEEEECC---CEEEECCCSS-TTTCCBSCEEEEE-T
T ss_pred             EEECCCC--CCCCcccccEEEECCEEEEEeeecCCC---cccCceEEEEecCCCCcEEecCCCC-CCcccccceEEEE-C
Confidence            9999876  454 44589999999999999986542   34688999987  899999998863 2445667777776 8


Q ss_pred             CeEEEEcCccccccccc--------cccceeeceEEEEecCcccccc
Q psy14331        225 GKILISGGYSKQSVKKD--------VDKGIVHTDTFLLTPDSKTLRS  263 (265)
Q Consensus       225 ~~iyi~GG~~~~~~~~~--------~~~~~~~~~~w~~~~~~~~w~~  263 (265)
                      ++|||+||.+.......        ........++++||+++++|+.
T Consensus       253 ~~iyv~GG~~~~~~~~~~~~g~~~~~~~~~~~~~~~~yd~~~~~W~~  299 (357)
T 2uvk_A          253 DSLIFAGGAGFKGSRENYQNGKNYAHEGLKKSYSTDIHLWHNGKWDK  299 (357)
T ss_dssp             TEEEEECCEECTTHHHHHHTTCSSTTTTCCCEECCEEEECC---CEE
T ss_pred             CEEEEEcCccccCCcccccccceeccccccceeeEEEEecCCCceee
Confidence            99999999864321000        0112234678999999999975

>2zwa_A Leucine carboxyl methyltransferase 2; HET: SAH CIT; 1.70A {Saccharomyces cerevisiae} PDB: 2zw9_A* 2zzk_A*

Probab=99.98  E-value=4.4e-32  Score=245.01  Aligned_cols=212  Identities=20%  Similarity=0.235  Sum_probs=172.4

Q ss_pred             HHHHHHHHhhcccceEEEec-c----CCCCCCCceeeEEecCCCEEEEECcEEeCCCceeeCCCcccCceEEEEe----e
Q psy14331         22 KIVRDIEAEEKRKNKVIEKV-V----PEPTRRANFSFLAHPDKDQLILFGGEFYDGQKFVFGSPKALDHLILMNL----F   92 (265)
Q Consensus        22 ~~~~~~~~~d~~~~~w~~~~-~----~~p~~r~~~~~~~~~~~~~lyv~GG~~~~~~~~~~~~~~~~~~~~~yd~----w   92 (265)
                      ..+++++.||+.+++|..+. +    .+|.+|.+|++++++.+++|||+||......        +++++|+||+    |
T Consensus       409 ~~~~~v~~yd~~~~~W~~~~~~~p~~~~p~~R~~hs~~~~~~~~~lyv~GG~~~~~~--------~~~dv~~yd~~t~~W  480 (695)
T 2zwa_A          409 YRVNEILQLSIHYDKIDMKNIEVSSSEVPVARMCHTFTTISRNNQLLLIGGRKAPHQ--------GLSDNWIFDMKTREW  480 (695)
T ss_dssp             SBCCCEEEEEECSSCEEEEECCCCCSCCCCCCBSCEEEEETTTTEEEEECCBSSTTC--------BCCCCEEEETTTTEE
T ss_pred             CCcCcEEEEECCCCeEEEeccCCCCCCCCccccceEEEEEccCCEEEEEcCCCCCCC--------ccccEEEEeCCCCcE
Confidence            45678999999999999854 2    3799999999998622899999999532221        1799999999    9


Q ss_pred             ecCCCCCCCccccceEEEecCCCEEEEEcCcccCCCccccccCCceeEEEcCCCcEEEEecCC-CCCCCcCceEEEEC--
Q psy14331         93 VSAPGAPPPRCSHQMVALSADKGQLWMFGGEFSSASESQFHHYKDLWVFRMGEKKWEKIVCKD-TPPSRSGHRMIALK--  169 (265)
Q Consensus        93 ~~~~~~p~~r~~~~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~~~yd~~~~~W~~~~~~~-~p~~~~~~~~~~~~--  169 (265)
                      ...+++|.+|..|+++.+.  +++|||+||....        . ++++||+.+++|+.+++.. +|.+|..|++++++  
T Consensus       481 ~~~~~~p~~R~~h~~~~~~--~~~iyv~GG~~~~--------~-~v~~yd~~t~~W~~~~~~g~~p~~r~~~~a~v~~~~  549 (695)
T 2zwa_A          481 SMIKSLSHTRFRHSACSLP--DGNVLILGGVTEG--------P-AMLLYNVTEEIFKDVTPKDEFFQNSLVSAGLEFDPV  549 (695)
T ss_dssp             EECCCCSBCCBSCEEEECT--TSCEEEECCBCSS--------C-SEEEEETTTTEEEECCCSSGGGGSCCBSCEEEEETT
T ss_pred             EECCCCCCCcccceEEEEc--CCEEEEECCCCCC--------C-CEEEEECCCCceEEccCCCCCCCcccceeEEEEeCC
Confidence            9999999999999998853  8999999997543        1 7999999999999998743 57899999988876  


Q ss_pred             -CEEEEEcCccCCCCccccCCceEEEEcCCCc------eEEeccCCCCCCCCCCceEEEeCCCeEEEEcCcccccccccc
Q psy14331        170 -KHLVVFGGFHDNLREAKYYNDVHIFDLETYA------WKKIEPLGAGPAPRSGCQMAATPDGKILISGGYSKQSVKKDV  242 (265)
Q Consensus       170 -~~iyv~GG~~~~~~~~~~~~~v~~y~~~~~~------W~~~~~~~~~p~~~~~~~~~~~~~~~iyi~GG~~~~~~~~~~  242 (265)
                       ++||++||.....  ....+++++||+.+++      |+.+..+  ++.+|.+|+++++.+++|||+||.+....    
T Consensus       550 ~~~iyv~GG~~~~~--~~~~~~v~~yd~~~~~w~~~~~W~~~~~~--p~~~R~~~~~~~~~~~~iyv~GG~~~~~~----  621 (695)
T 2zwa_A          550 SKQGIILGGGFMDQ--TTVSDKAIIFKYDAENATEPITVIKKLQH--PLFQRYGSQIKYITPRKLLIVGGTSPSGL----  621 (695)
T ss_dssp             TTEEEEECCBCTTS--SCBCCEEEEEEECTTCSSCCEEEEEEEEC--GGGCCBSCEEEEEETTEEEEECCBCSSCC----
T ss_pred             CCEEEEECCcCCCC--CeeeCcEEEEEccCCccccceEEEEcCCC--CCCCcccceEEEeCCCEEEEECCccCCCC----
Confidence             8999999986543  1457899999999999      8988874  35789999988883399999999864431    


Q ss_pred             ccceeeceEEEEecCccccc
Q psy14331        243 DKGIVHTDTFLLTPDSKTLR  262 (265)
Q Consensus       243 ~~~~~~~~~w~~~~~~~~w~  262 (265)
                        ....+++|.||+.+++|+
T Consensus       622 --~~~~~~v~~yd~~t~~W~  639 (695)
T 2zwa_A          622 --FDRTNSIISLDPLSETLT  639 (695)
T ss_dssp             --CCTTTSEEEEETTTTEEE
T ss_pred             --CCCCCeEEEEECCCCeEE
Confidence              124667899999999986

>2zwa_A Leucine carboxyl methyltransferase 2; HET: SAH CIT; 1.70A {Saccharomyces cerevisiae} PDB: 2zw9_A* 2zzk_A*

Probab=99.96  E-value=7.9e-28  Score=217.27  Aligned_cols=186  Identities=16%  Similarity=0.288  Sum_probs=148.3

Q ss_pred             ccCCCCCCCceeeEEecCCCEEEEECcEEeCCCceeeCCCcccCceEEEEe----eecCC-C-----CCCCccccceEEE
Q psy14331         41 VVPEPTRRANFSFLAHPDKDQLILFGGEFYDGQKFVFGSPKALDHLILMNL----FVSAP-G-----APPPRCSHQMVAL  110 (265)
Q Consensus        41 ~~~~p~~r~~~~~~~~~~~~~lyv~GG~~~~~~~~~~~~~~~~~~~~~yd~----w~~~~-~-----~p~~r~~~~~~~~  110 (265)
                      .+..|.+|.+++++ +  +++||++||.  ....        ++++++||+    |...+ +     +|.+|..|+++.+
T Consensus       382 ~~~~p~rr~g~~~~-~--~~~iyv~GG~--~~~~--------~~~v~~yd~~~~~W~~~~~~~p~~~~p~~R~~hs~~~~  448 (695)
T 2zwa_A          382 CECPINRKFGDVDV-A--GNDVFYMGGS--NPYR--------VNEILQLSIHYDKIDMKNIEVSSSEVPVARMCHTFTTI  448 (695)
T ss_dssp             CCCTTCCBSCEEEE-C--SSCEEEECCB--SSSB--------CCCEEEEEECSSCEEEEECCCCCSCCCCCCBSCEEEEE
T ss_pred             cCCCCCCceeEEEE-E--CCEEEEECCC--CCCC--------cCcEEEEECCCCeEEEeccCCCCCCCCccccceEEEEE
Confidence            34566677765544 3  8999999995  3321        789999999    88776 4     8999999999876


Q ss_pred             ecCCCEEEEEcCcccCCCccccccCCceeEEEcCCCcEEEEecCCCCCCCcCceEEEE-CCEEEEEcCccCCCCccccCC
Q psy14331        111 SADKGQLWMFGGEFSSASESQFHHYKDLWVFRMGEKKWEKIVCKDTPPSRSGHRMIAL-KKHLVVFGGFHDNLREAKYYN  189 (265)
Q Consensus       111 ~~~~~~iyv~GG~~~~~~~~~~~~~~~~~~yd~~~~~W~~~~~~~~p~~~~~~~~~~~-~~~iyv~GG~~~~~~~~~~~~  189 (265)
                      .. +++|||+||.....     ..++++++||+.+++|+.++++  |.+|..|+++++ +++||||||.+...       
T Consensus       449 ~~-~~~lyv~GG~~~~~-----~~~~dv~~yd~~t~~W~~~~~~--p~~R~~h~~~~~~~~~iyv~GG~~~~~-------  513 (695)
T 2zwa_A          449 SR-NNQLLLIGGRKAPH-----QGLSDNWIFDMKTREWSMIKSL--SHTRFRHSACSLPDGNVLILGGVTEGP-------  513 (695)
T ss_dssp             TT-TTEEEEECCBSSTT-----CBCCCCEEEETTTTEEEECCCC--SBCCBSCEEEECTTSCEEEECCBCSSC-------
T ss_pred             cc-CCEEEEEcCCCCCC-----CccccEEEEeCCCCcEEECCCC--CCCcccceEEEEcCCEEEEECCCCCCC-------
Confidence            11 68999999986543     2478999999999999999766  689999999997 99999999986542       


Q ss_pred             ceEEEEcCCCceEEeccCCCCCCCCCCceEEEeC-C-CeEEEEcCccccccccccccceeeceEEEEecCcccc
Q psy14331        190 DVHIFDLETYAWKKIEPLGAGPAPRSGCQMAATP-D-GKILISGGYSKQSVKKDVDKGIVHTDTFLLTPDSKTL  261 (265)
Q Consensus       190 ~v~~y~~~~~~W~~~~~~~~~p~~~~~~~~~~~~-~-~~iyi~GG~~~~~~~~~~~~~~~~~~~w~~~~~~~~w  261 (265)
                      ++++||+.+++|+.+...+..|.+|.+|+++++. + ++|||+||.....       ....+++|+||+.+++|
T Consensus       514 ~v~~yd~~t~~W~~~~~~g~~p~~r~~~~a~v~~~~~~~iyv~GG~~~~~-------~~~~~~v~~yd~~~~~w  580 (695)
T 2zwa_A          514 AMLLYNVTEEIFKDVTPKDEFFQNSLVSAGLEFDPVSKQGIILGGGFMDQ-------TTVSDKAIIFKYDAENA  580 (695)
T ss_dssp             SEEEEETTTTEEEECCCSSGGGGSCCBSCEEEEETTTTEEEEECCBCTTS-------SCBCCEEEEEEECTTCS
T ss_pred             CEEEEECCCCceEEccCCCCCCCcccceeEEEEeCCCCEEEEECCcCCCC-------CeeeCcEEEEEccCCcc
Confidence            8999999999999999866678899999866652 2 8899999986432       12457899999988883

>1k3i_A Galactose oxidase precursor; blade beta propeller, prosequence form, precursor of copper enzyme., oxidoreductase; 1.40A {Fusarium SP} SCOP: b.1.18.2 b.18.1.1 b.69.1.1 PDB: 1gof_A 1gog_A 1goh_A 2eie_A 2jkx_A 2vz1_A 2vz3_A 2eic_A 2eib_A 1t2x_A 2eid_A 2wq8_A

Probab=99.92  E-value=7.7e-25  Score=197.17  Aligned_cols=212  Identities=17%  Similarity=0.234  Sum_probs=153.5

Q ss_pred             HHHHHhhcccceEEEeccCCCCCCCcee--eEEecCCCEEEEECcEEeCCCceeeCCCcccCceEEEEe----eecCCCC
Q psy14331         25 RDIEAEEKRKNKVIEKVVPEPTRRANFS--FLAHPDKDQLILFGGEFYDGQKFVFGSPKALDHLILMNL----FVSAPGA   98 (265)
Q Consensus        25 ~~~~~~d~~~~~w~~~~~~~p~~r~~~~--~~~~~~~~~lyv~GG~~~~~~~~~~~~~~~~~~~~~yd~----w~~~~~~   98 (265)
                      ..++.||+.+++|.. ...+|.+|..|+  ++++ .+++||++||.  +           .+++++||+    |+..++|
T Consensus       219 ~~~~~yd~~t~~w~~-~~~~~~~~~~~~~~~~~~-~~g~lyv~GG~--~-----------~~~v~~yd~~t~~W~~~~~~  283 (656)
T 1k3i_A          219 TLTSSWDPSTGIVSD-RTVTVTKHDMFCPGISMD-GNGQIVVTGGN--D-----------AKKTSLYDSSSDSWIPGPDM  283 (656)
T ss_dssp             EEEEEECTTTCCBCC-CEEEECSCCCSSCEEEEC-TTSCEEEECSS--S-----------TTCEEEEEGGGTEEEECCCC
T ss_pred             EEEEEEeCCCCcEEe-CcccCCCCCCccccccCC-CCCCEEEeCCC--C-----------CCceEEecCcCCceeECCCC
Confidence            357899999999988 666777776554  3433 58999999993  2           247999999    9999999


Q ss_pred             CCCccccceEEEecCCCEEEEEcCcccCCCccccccCCceeEEEcCCCcEEEEe-----cCCCC----------------
Q psy14331         99 PPPRCSHQMVALSADKGQLWMFGGEFSSASESQFHHYKDLWVFRMGEKKWEKIV-----CKDTP----------------  157 (265)
Q Consensus        99 p~~r~~~~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~~~yd~~~~~W~~~~-----~~~~p----------------  157 (265)
                      |.+|..|+++.+.  +++||++||.....     ...+++++||+.+++|+.++     ++..+                
T Consensus       284 ~~~R~~~s~~~~~--dg~iyv~GG~~~~~-----~~~~~~e~yd~~t~~W~~~~~~~~~p~~~~~~~~~~~~~~~iyv~G  356 (656)
T 1k3i_A          284 QVARGYQSSATMS--DGRVFTIGGSWSGG-----VFEKNGEVYSPSSKTWTSLPNAKVNPMLTADKQGLYRSDNHAWLFG  356 (656)
T ss_dssp             SSCCSSCEEEECT--TSCEEEECCCCCSS-----SCCCCEEEEETTTTEEEEETTSCSGGGCCCCTTGGGTTTCSCCEEE
T ss_pred             CccccccceEEec--CCeEEEEeCcccCC-----cccccceEeCCCCCcceeCCCccccccccccccceeecCCceEEEE
Confidence            9999999988764  78999999953322     23788999999999999973     22100                


Q ss_pred             ---------------------------------------CCCcCceEEE---ECCEEEEEcCccCCCCccccCC---ceE
Q psy14331        158 ---------------------------------------PSRSGHRMIA---LKKHLVVFGGFHDNLREAKYYN---DVH  192 (265)
Q Consensus       158 ---------------------------------------~~~~~~~~~~---~~~~iyv~GG~~~~~~~~~~~~---~v~  192 (265)
                                                             .++..++++.   .+++||++||...... ...++   .++
T Consensus       357 g~~g~~~~~~~~~~v~~yd~~~~~w~~~~~~~~~~~~~~~~~~~~~av~~~~~~~~i~v~GG~~~~~~-~~~~~~~~~v~  435 (656)
T 1k3i_A          357 WKKGSVFQAGPSTAMNWYYTSGSGDVKSAGKRQSNRGVAPDAMCGNAVMYDAVKGKILTFGGSPDYQD-SDATTNAHIIT  435 (656)
T ss_dssp             CGGGCEEECCSSSEEEEEECSTTCEEEEEEECEETTEECCCCBTCEEEEEETTTTEEEEECCBSSSSS-SBCCCCEEEEE
T ss_pred             CCCCcEEEecCccceeeeecCCcceeecCCccccccccCCCCCCCceEeccCCCCeEEEEeCCCCCCC-CCcCCcceEEE
Confidence                                                   0122334443   3899999999753211 12234   789


Q ss_pred             EEEcCCCceEEeccCCCCCCCCCCceEEEeCCCeEEEEcCccccccccccccceeeceEEEEecCcccccc
Q psy14331        193 IFDLETYAWKKIEPLGAGPAPRSGCQMAATPDGKILISGGYSKQSVKKDVDKGIVHTDTFLLTPDSKTLRS  263 (265)
Q Consensus       193 ~y~~~~~~W~~~~~~~~~p~~~~~~~~~~~~~~~iyi~GG~~~~~~~~~~~~~~~~~~~w~~~~~~~~w~~  263 (265)
                      +||+.+++|..+. .+.+|.+|..|+++++.+++|||+||.+....   .....+..++++||+.+++|+.
T Consensus       436 ~yd~~~~~W~~~~-~~~mp~~R~~~~~~~l~~g~i~v~GG~~~~~~---~~~~~~~~~v~~ydp~t~~W~~  502 (656)
T 1k3i_A          436 LGEPGTSPNTVFA-SNGLYFARTFHTSVVLPDGSTFITGGQRRGIP---FEDSTPVFTPEIYVPEQDTFYK  502 (656)
T ss_dssp             CCSTTSCCEEEEC-TTCCSSCCBSCEEEECTTSCEEEECCBSBCCT---TCCCSBCCCCEEEEGGGTEEEE
T ss_pred             cCCCCCCCeeEEc-cCCCCCCcccCCeEECCCCCEEEECCcccCcC---cCCCCcccceEEEcCCCCceee
Confidence            9999999999987 12258899999988777999999999764311   0112356678888888888864

>1k3i_A Galactose oxidase precursor; blade beta propeller, prosequence form, precursor of copper enzyme., oxidoreductase; 1.40A {Fusarium SP} SCOP: b.1.18.2 b.18.1.1 b.69.1.1 PDB: 1gof_A 1gog_A 1goh_A 2eie_A 2jkx_A 2vz1_A 2vz3_A 2eic_A 2eib_A 1t2x_A 2eid_A 2wq8_A

Probab=99.91  E-value=1.2e-23  Score=189.34  Aligned_cols=193  Identities=16%  Similarity=0.149  Sum_probs=144.0

Q ss_pred             HHHHhhcccceEEEeccCCCCCCCceeeEEecCCCEEEEECcEEeCCCceeeCCCcccCceEEEEe----eecC-----C
Q psy14331         26 DIEAEEKRKNKVIEKVVPEPTRRANFSFLAHPDKDQLILFGGEFYDGQKFVFGSPKALDHLILMNL----FVSA-----P   96 (265)
Q Consensus        26 ~~~~~d~~~~~w~~~~~~~p~~r~~~~~~~~~~~~~lyv~GG~~~~~~~~~~~~~~~~~~~~~yd~----w~~~-----~   96 (265)
                      +++.||+.+++|.. .+++|.+|.+|+++++ .+++||++||.......        ++++++||+    |...     .
T Consensus       266 ~v~~yd~~t~~W~~-~~~~~~~R~~~s~~~~-~dg~iyv~GG~~~~~~~--------~~~~e~yd~~t~~W~~~~~~~~~  335 (656)
T 1k3i_A          266 KTSLYDSSSDSWIP-GPDMQVARGYQSSATM-SDGRVFTIGGSWSGGVF--------EKNGEVYSPSSKTWTSLPNAKVN  335 (656)
T ss_dssp             CEEEEEGGGTEEEE-CCCCSSCCSSCEEEEC-TTSCEEEECCCCCSSSC--------CCCEEEEETTTTEEEEETTSCSG
T ss_pred             ceEEecCcCCceeE-CCCCCccccccceEEe-cCCeEEEEeCcccCCcc--------cccceEeCCCCCcceeCCCcccc
Confidence            68999999999998 7889999999998885 38899999994222221        688999998    7764     2


Q ss_pred             CCCCC---------------------------------------------------------ccccceEEEecCCCEEEE
Q psy14331         97 GAPPP---------------------------------------------------------RCSHQMVALSADKGQLWM  119 (265)
Q Consensus        97 ~~p~~---------------------------------------------------------r~~~~~~~~~~~~~~iyv  119 (265)
                      +|+..                                                         +..++++.++..+++||+
T Consensus       336 p~~~~~~~~~~~~~~~iyv~Gg~~g~~~~~~~~~~v~~yd~~~~~w~~~~~~~~~~~~~~~~~~~~~av~~~~~~~~i~v  415 (656)
T 1k3i_A          336 PMLTADKQGLYRSDNHAWLFGWKKGSVFQAGPSTAMNWYYTSGSGDVKSAGKRQSNRGVAPDAMCGNAVMYDAVKGKILT  415 (656)
T ss_dssp             GGCCCCTTGGGTTTCSCCEEECGGGCEEECCSSSEEEEEECSTTCEEEEEEECEETTEECCCCBTCEEEEEETTTTEEEE
T ss_pred             ccccccccceeecCCceEEEECCCCcEEEecCccceeeeecCCcceeecCCccccccccCCCCCCCceEeccCCCCeEEE
Confidence            33322                                                         223444443345899999


Q ss_pred             EcCcccCCCccccccCC---ceeEEEcCCCcEEEEecCCCCCCCcCceEEEE-CCEEEEEcCccCCC--CccccCCceEE
Q psy14331        120 FGGEFSSASESQFHHYK---DLWVFRMGEKKWEKIVCKDTPPSRSGHRMIAL-KKHLVVFGGFHDNL--REAKYYNDVHI  193 (265)
Q Consensus       120 ~GG~~~~~~~~~~~~~~---~~~~yd~~~~~W~~~~~~~~p~~~~~~~~~~~-~~~iyv~GG~~~~~--~~~~~~~~v~~  193 (265)
                      +||.......   ..++   ++++||+.+++|..+....+|.+|..|+++.+ +++|||+||.+...  ......+++++
T Consensus       416 ~GG~~~~~~~---~~~~~~~~v~~yd~~~~~W~~~~~~~mp~~R~~~~~~~l~~g~i~v~GG~~~~~~~~~~~~~~~v~~  492 (656)
T 1k3i_A          416 FGGSPDYQDS---DATTNAHIITLGEPGTSPNTVFASNGLYFARTFHTSVVLPDGSTFITGGQRRGIPFEDSTPVFTPEI  492 (656)
T ss_dssp             ECCBSSSSSS---BCCCCEEEEECCSTTSCCEEEECTTCCSSCCBSCEEEECTTSCEEEECCBSBCCTTCCCSBCCCCEE
T ss_pred             EeCCCCCCCC---CcCCcceEEEcCCCCCCCeeEEccCCCCCCcccCCeEECCCCCEEEECCcccCcCcCCCCcccceEE
Confidence            9997432211   1234   78899999999999862234789999998888 99999999975321  11245789999


Q ss_pred             EEcCCCceEEeccCCCCCCCCCCceEEEe-CCCeEEEEcCcc
Q psy14331        194 FDLETYAWKKIEPLGAGPAPRSGCQMAAT-PDGKILISGGYS  234 (265)
Q Consensus       194 y~~~~~~W~~~~~~~~~p~~~~~~~~~~~-~~~~iyi~GG~~  234 (265)
                      ||+.+++|+.+..   +|.+|..|+++++ .+++|||+||..
T Consensus       493 ydp~t~~W~~~~~---~~~~R~~hs~a~ll~dg~v~v~GG~~  531 (656)
T 1k3i_A          493 YVPEQDTFYKQNP---NSIVRVYHSISLLLPDGRVFNGGGGL  531 (656)
T ss_dssp             EEGGGTEEEECCC---CSSCCCTTEEEEECTTSCEEEEECCC
T ss_pred             EcCCCCceeecCC---CCCccccccHhhcCCCcEEEecCCCC
Confidence            9999999999887   4889999986554 488999999964

>3mbr_X Glutamine cyclotransferase; beta-propeller; 1.44A {Xanthomonas campestris}

Probab=96.92  E-value=0.047  Score=42.31  Aligned_cols=110  Identities=16%  Similarity=0.207  Sum_probs=70.8

Q ss_pred             ceeeEEecCCCEEEEECcEEeCCCceeeCCCcccCceEEEEe----eecCCCCCCCccccceEEEecCCCEEEEEcCccc
Q psy14331         50 NFSFLAHPDKDQLILFGGEFYDGQKFVFGSPKALDHLILMNL----FVSAPGAPPPRCSHQMVALSADKGQLWMFGGEFS  125 (265)
Q Consensus        50 ~~~~~~~~~~~~lyv~GG~~~~~~~~~~~~~~~~~~~~~yd~----w~~~~~~p~~r~~~~~~~~~~~~~~iyv~GG~~~  125 (265)
                      .+.+.+.  ++.||+-.|.  .+          -+.+.++|+    -...-+++..-++.+.+..   +++||+....  
T Consensus        23 tqGL~~~--~~~LyestG~--~g----------~S~v~~vD~~tgkv~~~~~l~~~~fgeGi~~~---~~~ly~ltw~--   83 (243)
T 3mbr_X           23 TEGLFYL--RGHLYESTGE--TG----------RSSVRKVDLETGRILQRAEVPPPYFGAGIVAW---RDRLIQLTWR--   83 (243)
T ss_dssp             EEEEEEE--TTEEEEEECC--TT----------SCEEEEEETTTCCEEEEEECCTTCCEEEEEEE---TTEEEEEESS--
T ss_pred             cccEEEE--CCEEEEECCC--CC----------CceEEEEECCCCCEEEEEeCCCCcceeEEEEe---CCEEEEEEee--
Confidence            3456664  7999999883  22          257888888    2222234433344544544   8999998653  


Q ss_pred             CCCccccccCCceeEEEcCCCcEEEEecCCCCCCCcCceEEEECCEEEEEcCccCCCCccccCCceEEEEcCCCce
Q psy14331        126 SASESQFHHYKDLWVFRMGEKKWEKIVCKDTPPSRSGHRMIALKKHLVVFGGFHDNLREAKYYNDVHIFDLETYAW  201 (265)
Q Consensus       126 ~~~~~~~~~~~~~~~yd~~~~~W~~~~~~~~p~~~~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~v~~y~~~~~~W  201 (265)
                               .+.+++||+.+.+-..  ...  .+..+.+++..++.+|+.-|          .+.|+.+|+.+.+-
T Consensus        84 ---------~~~v~v~D~~tl~~~~--ti~--~~~~Gwglt~dg~~L~vSdg----------s~~l~~iDp~t~~~  136 (243)
T 3mbr_X           84 ---------NHEGFVYDLATLTPRA--RFR--YPGEGWALTSDDSHLYMSDG----------TAVIRKLDPDTLQQ  136 (243)
T ss_dssp             ---------SSEEEEEETTTTEEEE--EEE--CSSCCCEEEECSSCEEEECS----------SSEEEEECTTTCCE
T ss_pred             ---------CCEEEEEECCcCcEEE--EEe--CCCCceEEeeCCCEEEEECC----------CCeEEEEeCCCCeE
Confidence                     4679999998875432  221  22345566666778888765          35799999998654

>3dsm_A Uncharacterized protein bacuni_02894; seven_blated beta propeller, structural genomics, PSI-2, Pro structure initiative; 1.90A {Bacteroides uniformis}

Probab=96.85  E-value=0.13  Score=41.61  Aligned_cols=165  Identities=12%  Similarity=0.030  Sum_probs=89.3

Q ss_pred             HHHHhhcccceEEEecc----CCCCCCCceeeEEecCCCEEEEECcEEeCCCceeeCCCcccCceEEEEe--eecCCCCC
Q psy14331         26 DIEAEEKRKNKVIEKVV----PEPTRRANFSFLAHPDKDQLILFGGEFYDGQKFVFGSPKALDHLILMNL--FVSAPGAP   99 (265)
Q Consensus        26 ~~~~~d~~~~~w~~~~~----~~p~~r~~~~~~~~~~~~~lyv~GG~~~~~~~~~~~~~~~~~~~~~yd~--w~~~~~~p   99 (265)
                      .+..+|+.+.+......    ..+.....+.+++  +++++|+....              .+.+.++|+  ......++
T Consensus        18 ~l~~~d~~t~~~~~~i~~~~n~~~lg~~~~~i~~--~~~~lyv~~~~--------------~~~v~viD~~t~~~~~~i~   81 (328)
T 3dsm_A           18 TLSYYDPATCEVENEVFYRANGFKLGDVAQSMVI--RDGIGWIVVNN--------------SHVIFAIDINTFKEVGRIT   81 (328)
T ss_dssp             EEEEEETTTTEEECSHHHHHHSSCCBSCEEEEEE--ETTEEEEEEGG--------------GTEEEEEETTTCCEEEEEE
T ss_pred             eEEEEECCCCEEhhhhHhhhcCcccCccceEEEE--ECCEEEEEEcC--------------CCEEEEEECcccEEEEEcC
Confidence            35567777777654221    1122233455555  48999998651              357888888  11111111


Q ss_pred             CCccccceEEEecCCCEEEEEcCcccCCCccccccCCceeEEEcCCCcEEEEecCCC-C-CCCcCceEEEECCEEEEEcC
Q psy14331        100 PPRCSHQMVALSADKGQLWMFGGEFSSASESQFHHYKDLWVFRMGEKKWEKIVCKDT-P-PSRSGHRMIALKKHLVVFGG  177 (265)
Q Consensus       100 ~~r~~~~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~~~yd~~~~~W~~~~~~~~-p-~~~~~~~~~~~~~~iyv~GG  177 (265)
                      .....+..+...  ++++|+....           .+.+.++|+.+++-...-.... . ....-..++..++++|+..-
T Consensus        82 ~~~~p~~i~~~~--~g~lyv~~~~-----------~~~v~~iD~~t~~~~~~i~~g~~~~~~~~p~~i~~~~~~lyv~~~  148 (328)
T 3dsm_A           82 GFTSPRYIHFLS--DEKAYVTQIW-----------DYRIFIINPKTYEITGYIECPDMDMESGSTEQMVQYGKYVYVNCW  148 (328)
T ss_dssp             CCSSEEEEEEEE--TTEEEEEEBS-----------CSEEEEEETTTTEEEEEEECTTCCTTTCBCCCEEEETTEEEEEEC
T ss_pred             CCCCCcEEEEeC--CCeEEEEECC-----------CCeEEEEECCCCeEEEEEEcCCccccCCCcceEEEECCEEEEEcC
Confidence            112223333323  6799998642           3568999999887543222210 0 00022344557889999742


Q ss_pred             ccCCCCccccCCceEEEEcCCCceEEeccCCCCCCCCCCceEEEeCCCeEEEEcC
Q psy14331        178 FHDNLREAKYYNDVHIFDLETYAWKKIEPLGAGPAPRSGCQMAATPDGKILISGG  232 (265)
Q Consensus       178 ~~~~~~~~~~~~~v~~y~~~~~~W~~~~~~~~~p~~~~~~~~~~~~~~~iyi~GG  232 (265)
                       .       ..+.|.++|+.+.+....-..+..|     +.++.-.++++|+...
T Consensus       149 -~-------~~~~v~viD~~t~~~~~~i~~g~~p-----~~i~~~~dG~l~v~~~  190 (328)
T 3dsm_A          149 -S-------YQNRILKIDTETDKVVDELTIGIQP-----TSLVMDKYNKMWTITD  190 (328)
T ss_dssp             -T-------TCCEEEEEETTTTEEEEEEECSSCB-----CCCEECTTSEEEEEBC
T ss_pred             -C-------CCCEEEEEECCCCeEEEEEEcCCCc-----cceEEcCCCCEEEEEC
Confidence             0       1357999999998765433322112     2334444678887753

>3mbr_X Glutamine cyclotransferase; beta-propeller; 1.44A {Xanthomonas campestris}

Probab=96.70  E-value=0.12  Score=40.01  Aligned_cols=92  Identities=18%  Similarity=0.333  Sum_probs=63.3

Q ss_pred             CCEEEEEcCcccCCCccccccCCceeEEEcCCCcEEEEecCCCCCCCcCceEEEECCEEEEEcCccCCCCccccCCceEE
Q psy14331        114 KGQLWMFGGEFSSASESQFHHYKDLWVFRMGEKKWEKIVCKDTPPSRSGHRMIALKKHLVVFGGFHDNLREAKYYNDVHI  193 (265)
Q Consensus       114 ~~~iyv~GG~~~~~~~~~~~~~~~~~~yd~~~~~W~~~~~~~~p~~~~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~v~~  193 (265)
                      ++.||+..|...         .+.+.++|+++++-..-...  |...++.+++..+++||+....         .+.+++
T Consensus        30 ~~~LyestG~~g---------~S~v~~vD~~tgkv~~~~~l--~~~~fgeGi~~~~~~ly~ltw~---------~~~v~v   89 (243)
T 3mbr_X           30 RGHLYESTGETG---------RSSVRKVDLETGRILQRAEV--PPPYFGAGIVAWRDRLIQLTWR---------NHEGFV   89 (243)
T ss_dssp             TTEEEEEECCTT---------SCEEEEEETTTCCEEEEEEC--CTTCCEEEEEEETTEEEEEESS---------SSEEEE
T ss_pred             CCEEEEECCCCC---------CceEEEEECCCCCEEEEEeC--CCCcceeEEEEeCCEEEEEEee---------CCEEEE
Confidence            789999988642         35799999999976554433  3455666778889999998643         367999


Q ss_pred             EEcCCCceE-EeccCCCCCCCCCCceEEEeCCCeEEEEcC
Q psy14331        194 FDLETYAWK-KIEPLGAGPAPRSGCQMAATPDGKILISGG  232 (265)
Q Consensus       194 y~~~~~~W~-~~~~~~~~p~~~~~~~~~~~~~~~iyi~GG  232 (265)
                      ||+.+.+-. +++.      +..+.+++. .++.+|+.-|
T Consensus        90 ~D~~tl~~~~ti~~------~~~Gwglt~-dg~~L~vSdg  122 (243)
T 3mbr_X           90 YDLATLTPRARFRY------PGEGWALTS-DDSHLYMSDG  122 (243)
T ss_dssp             EETTTTEEEEEEEC------SSCCCEEEE-CSSCEEEECS
T ss_pred             EECCcCcEEEEEeC------CCCceEEee-CCCEEEEECC
Confidence            999886533 3332      234556553 3667888866

>3nok_A Glutaminyl cyclase; beta-propeller, cyclotransferase, pyrogl transferase; HET: MES DDQ; 1.65A {Myxococcus xanthus}

Probab=96.52  E-value=0.049  Score=42.78  Aligned_cols=105  Identities=11%  Similarity=0.066  Sum_probs=66.4

Q ss_pred             eeeEEecCCCEEEEECcEEeCCCceeeCCCcccCceEEEEe-----eecCCCCCCCccccceEEEecCCCEEEEEcCccc
Q psy14331         51 FSFLAHPDKDQLILFGGEFYDGQKFVFGSPKALDHLILMNL-----FVSAPGAPPPRCSHQMVALSADKGQLWMFGGEFS  125 (265)
Q Consensus        51 ~~~~~~~~~~~lyv~GG~~~~~~~~~~~~~~~~~~~~~yd~-----w~~~~~~p~~r~~~~~~~~~~~~~~iyv~GG~~~  125 (265)
                      +.+.+  .++.||+..|.              ...+.++|+     -...  ++..-+....+..   +++||+....  
T Consensus        58 qGL~~--~~~~Ly~stG~--------------~g~v~~iD~~Tgkv~~~~--l~~~~FgeGit~~---g~~Ly~ltw~--  114 (268)
T 3nok_A           58 QGLVF--HQGHFFESTGH--------------QGTLRQLSLESAQPVWME--RLGNIFAEGLASD---GERLYQLTWT--  114 (268)
T ss_dssp             EEEEE--ETTEEEEEETT--------------TTEEEECCSSCSSCSEEE--ECTTCCEEEEEEC---SSCEEEEESS--
T ss_pred             ceEEE--ECCEEEEEcCC--------------CCEEEEEECCCCcEEeEE--CCCCcceeEEEEe---CCEEEEEEcc--
Confidence            45555  48999999883              234677777     1111  3322233333333   8899998553  


Q ss_pred             CCCccccccCCceeEEEcCCCcEEEEecCCCCCCCcCceEEEECCEEEEEcCccCCCCccccCCceEEEEcCCCce
Q psy14331        126 SASESQFHHYKDLWVFRMGEKKWEKIVCKDTPPSRSGHRMIALKKHLVVFGGFHDNLREAKYYNDVHIFDLETYAW  201 (265)
Q Consensus       126 ~~~~~~~~~~~~~~~yd~~~~~W~~~~~~~~p~~~~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~v~~y~~~~~~W  201 (265)
                               .+.+++||+++.+-..-  ..  .+-.+.+++..++.+|+.-|          .+.|+.+|+.+.+-
T Consensus       115 ---------~~~v~V~D~~Tl~~~~t--i~--~~~eGwGLt~Dg~~L~vSdG----------s~~l~~iDp~T~~v  167 (268)
T 3nok_A          115 ---------EGLLFTWSGMPPQRERT--TR--YSGEGWGLCYWNGKLVRSDG----------GTMLTFHEPDGFAL  167 (268)
T ss_dssp             ---------SCEEEEEETTTTEEEEE--EE--CSSCCCCEEEETTEEEEECS----------SSEEEEECTTTCCE
T ss_pred             ---------CCEEEEEECCcCcEEEE--Ee--CCCceeEEecCCCEEEEECC----------CCEEEEEcCCCCeE
Confidence                     46799999988754322  21  22234567777889999865          35799999998654

>3vgz_A Uncharacterized protein YNCE; beta-propeller, protein binding; 1.70A {Escherichia coli} PDB: 3vh0_A*

Probab=96.13  E-value=0.39  Score=38.46  Aligned_cols=166  Identities=8%  Similarity=0.045  Sum_probs=81.7

Q ss_pred             HHHHhhcccceEEEeccC--CCC-----CCCceeeEEecCCCEEEEECcEEeCCCceeeCCCcccCceEEEEe--eecCC
Q psy14331         26 DIEAEEKRKNKVIEKVVP--EPT-----RRANFSFLAHPDKDQLILFGGEFYDGQKFVFGSPKALDHLILMNL--FVSAP   96 (265)
Q Consensus        26 ~~~~~d~~~~~w~~~~~~--~p~-----~r~~~~~~~~~~~~~lyv~GG~~~~~~~~~~~~~~~~~~~~~yd~--w~~~~   96 (265)
                      .+..+|..+.+-......  ...     +...+.+++.++++.+|+.+..  .           -..++.+|+  .....
T Consensus       112 ~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~--~-----------~~~i~~~d~~~~~~~~  178 (353)
T 3vgz_A          112 AVTAIDAKTGEVKGRLVLDDRKRTEEVRPLQPRELVADDATNTVYISGIG--K-----------ESVIWVVDGGNIKLKT  178 (353)
T ss_dssp             EEEEEETTTCCEEEEEESCCCCCCSSCCCCEEEEEEEETTTTEEEEEEES--S-----------SCEEEEEETTTTEEEE
T ss_pred             EEEEEeCCCCeeEEEEecCCCccccccCCCCCceEEECCCCCEEEEEecC--C-----------CceEEEEcCCCCceEE
Confidence            466778777664331221  111     1113456666678888887630  1           246888888  11111


Q ss_pred             CCC-CCccccceEEEecCCCEEEEEcCcccCCCccccccCCceeEEEcCCCcEEEEecCCCCCCCcCc-eEEEE--CCEE
Q psy14331         97 GAP-PPRCSHQMVALSADKGQLWMFGGEFSSASESQFHHYKDLWVFRMGEKKWEKIVCKDTPPSRSGH-RMIAL--KKHL  172 (265)
Q Consensus        97 ~~p-~~r~~~~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~~~yd~~~~~W~~~~~~~~p~~~~~~-~~~~~--~~~i  172 (265)
                      .++ .....+..+ +...++.||+...            .+.+..+|+.+++-..........+.... .++..  ++.+
T Consensus       179 ~~~~~~~~~~~~~-~s~dg~~l~~~~~------------~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l  245 (353)
T 3vgz_A          179 AIQNTGKMSTGLA-LDSEGKRLYTTNA------------DGELITIDTADNKILSRKKLLDDGKEHFFINISLDTARQRA  245 (353)
T ss_dssp             EECCCCTTCCCCE-EETTTTEEEEECT------------TSEEEEEETTTTEEEEEEECCCSSSCCCEEEEEEETTTTEE
T ss_pred             EecCCCCccceEE-ECCCCCEEEEEcC------------CCeEEEEECCCCeEEEEEEcCCCCCCcccceEEECCCCCEE
Confidence            111 111122232 3334566777643            24588999988764333222111112211 23333  4567


Q ss_pred             EEEcCccCCCCccccCCceEEEEcCCCceEEeccCCCCCCCCCCceEEEeCCC-eEEEEcC
Q psy14331        173 VVFGGFHDNLREAKYYNDVHIFDLETYAWKKIEPLGAGPAPRSGCQMAATPDG-KILISGG  232 (265)
Q Consensus       173 yv~GG~~~~~~~~~~~~~v~~y~~~~~~W~~~~~~~~~p~~~~~~~~~~~~~~-~iyi~GG  232 (265)
                      |+....         .+.++.||+.+.+....-..   +.+   ..++...++ .+|+.+.
T Consensus       246 ~~~~~~---------~~~v~~~d~~~~~~~~~~~~---~~~---~~~~~s~dg~~l~v~~~  291 (353)
T 3vgz_A          246 FITDSK---------AAEVLVVDTRNGNILAKVAA---PES---LAVLFNPARNEAYVTHR  291 (353)
T ss_dssp             EEEESS---------SSEEEEEETTTCCEEEEEEC---SSC---CCEEEETTTTEEEEEET
T ss_pred             EEEeCC---------CCEEEEEECCCCcEEEEEEc---CCC---ceEEECCCCCEEEEEEC
Confidence            775432         35799999988775444332   222   223333344 4777654

>3nol_A Glutamine cyclotransferase; beta-propeller, glutaminyl cyclase, pyrogl transferase; 1.70A {Zymomonas mobilis} PDB: 3nom_A

Probab=96.08  E-value=0.27  Score=38.44  Aligned_cols=98  Identities=10%  Similarity=0.063  Sum_probs=63.9

Q ss_pred             ceEEEecCCCEEEEEcCcccCCCccccccCCceeEEEcCCCcEEEEecCCCCCCCcCceEEEECCEEEEEcCccCCCCcc
Q psy14331        106 QMVALSADKGQLWMFGGEFSSASESQFHHYKDLWVFRMGEKKWEKIVCKDTPPSRSGHRMIALKKHLVVFGGFHDNLREA  185 (265)
Q Consensus       106 ~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~~~yd~~~~~W~~~~~~~~p~~~~~~~~~~~~~~iyv~GG~~~~~~~~  185 (265)
                      ....+.  ++.||+..|...         .+.+.++|+++++-..--..  +..-++.+++..+++||+....       
T Consensus        46 qGL~~~--~~~LyestG~~g---------~S~v~~vD~~Tgkv~~~~~l--~~~~FgeGit~~g~~ly~ltw~-------  105 (262)
T 3nol_A           46 EGFFYR--NGYFYESTGLNG---------RSSIRKVDIESGKTLQQIEL--GKRYFGEGISDWKDKIVGLTWK-------  105 (262)
T ss_dssp             EEEEEE--TTEEEEEEEETT---------EEEEEEECTTTCCEEEEEEC--CTTCCEEEEEEETTEEEEEESS-------
T ss_pred             ceEEEE--CCEEEEECCCCC---------CceEEEEECCCCcEEEEEec--CCccceeEEEEeCCEEEEEEee-------
Confidence            334443  789999998632         25688999999876544333  3444556678889999998653       


Q ss_pred             ccCCceEEEEcCCCceE-EeccCCCCCCCCCCceEEEeCCCeEEEEcC
Q psy14331        186 KYYNDVHIFDLETYAWK-KIEPLGAGPAPRSGCQMAATPDGKILISGG  232 (265)
Q Consensus       186 ~~~~~v~~y~~~~~~W~-~~~~~~~~p~~~~~~~~~~~~~~~iyi~GG  232 (265)
                        .+.+++||+.+.+-. +++.      +..+.+++ ..++.+|+.-|
T Consensus       106 --~~~v~v~D~~t~~~~~ti~~------~~eG~glt-~dg~~L~~SdG  144 (262)
T 3nol_A          106 --NGLGFVWNIRNLRQVRSFNY------DGEGWGLT-HNDQYLIMSDG  144 (262)
T ss_dssp             --SSEEEEEETTTCCEEEEEEC------SSCCCCEE-ECSSCEEECCS
T ss_pred             --CCEEEEEECccCcEEEEEEC------CCCceEEe-cCCCEEEEECC
Confidence              367999999886543 3333      12345544 33567887765

>3nol_A Glutamine cyclotransferase; beta-propeller, glutaminyl cyclase, pyrogl transferase; 1.70A {Zymomonas mobilis} PDB: 3nom_A

Probab=96.03  E-value=0.39  Score=37.57  Aligned_cols=135  Identities=11%  Similarity=-0.009  Sum_probs=80.3

Q ss_pred             HHHHhhcccceEEEeccCCCCCCCceeeEEecCCCEEEEECcEEeCCCceeeCCCcccCceEEEEe--eecCCCCCCCcc
Q psy14331         26 DIEAEEKRKNKVIEKVVPEPTRRANFSFLAHPDKDQLILFGGEFYDGQKFVFGSPKALDHLILMNL--FVSAPGAPPPRC  103 (265)
Q Consensus        26 ~~~~~d~~~~~w~~~~~~~p~~r~~~~~~~~~~~~~lyv~GG~~~~~~~~~~~~~~~~~~~~~yd~--w~~~~~~p~~r~  103 (265)
                      .+..+|+.+.+-.. ..+++....+..++..  +++||+....              .+.+++||+  -......+.+-.
T Consensus        66 ~v~~vD~~Tgkv~~-~~~l~~~~FgeGit~~--g~~ly~ltw~--------------~~~v~v~D~~t~~~~~ti~~~~e  128 (262)
T 3nol_A           66 SIRKVDIESGKTLQ-QIELGKRYFGEGISDW--KDKIVGLTWK--------------NGLGFVWNIRNLRQVRSFNYDGE  128 (262)
T ss_dssp             EEEEECTTTCCEEE-EEECCTTCCEEEEEEE--TTEEEEEESS--------------SSEEEEEETTTCCEEEEEECSSC
T ss_pred             eEEEEECCCCcEEE-EEecCCccceeEEEEe--CCEEEEEEee--------------CCEEEEEECccCcEEEEEECCCC
Confidence            46788998888765 3344444445556664  9999998652              468899998  222223333334


Q ss_pred             ccceEEEecCCCEEEEEcCcccCCCccccccCCceeEEEcCCCcEE-EEecCCCCCCCcCc-eEEEECCEEEEEcCccCC
Q psy14331        104 SHQMVALSADKGQLWMFGGEFSSASESQFHHYKDLWVFRMGEKKWE-KIVCKDTPPSRSGH-RMIALKKHLVVFGGFHDN  181 (265)
Q Consensus       104 ~~~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~~~yd~~~~~W~-~~~~~~~p~~~~~~-~~~~~~~~iyv~GG~~~~  181 (265)
                      +.+.+ .  .++.||+.-|            .+.+..+|+++.+-. .++....+.+.... .+...+++||+-- +   
T Consensus       129 G~glt-~--dg~~L~~SdG------------s~~i~~iDp~T~~v~~~I~V~~~g~~~~~lNELe~~~G~lyan~-w---  189 (262)
T 3nol_A          129 GWGLT-H--NDQYLIMSDG------------TPVLRFLDPESLTPVRTITVTAHGEELPELNELEWVDGEIFANV-W---  189 (262)
T ss_dssp             CCCEE-E--CSSCEEECCS------------SSEEEEECTTTCSEEEEEECEETTEECCCEEEEEEETTEEEEEE-T---
T ss_pred             ceEEe-c--CCCEEEEECC------------CCeEEEEcCCCCeEEEEEEeccCCccccccceeEEECCEEEEEE-c---
Confidence            44444 2  2677888765            356999999987533 23221111121111 2344588888632 1   


Q ss_pred             CCccccCCceEEEEcCCCce
Q psy14331        182 LREAKYYNDVHIFDLETYAW  201 (265)
Q Consensus       182 ~~~~~~~~~v~~y~~~~~~W  201 (265)
                           ..++|.+.|+.+.+=
T Consensus       190 -----~~~~I~vIDp~tG~V  204 (262)
T 3nol_A          190 -----QTNKIVRIDPETGKV  204 (262)
T ss_dssp             -----TSSEEEEECTTTCBE
T ss_pred             -----cCCeEEEEECCCCcE
Confidence                 146899999999764

>3dsm_A Uncharacterized protein bacuni_02894; seven_blated beta propeller, structural genomics, PSI-2, Pro structure initiative; 1.90A {Bacteroides uniformis}

Probab=95.97  E-value=0.49  Score=38.12  Aligned_cols=169  Identities=8%  Similarity=-0.041  Sum_probs=85.9

Q ss_pred             HHHHhhcccceEEEeccCCCCCCCceeeEEecCCCEEEEECcEEeCCCceeeCCCcccCceEEEEe-------eecCCCC
Q psy14331         26 DIEAEEKRKNKVIEKVVPEPTRRANFSFLAHPDKDQLILFGGEFYDGQKFVFGSPKALDHLILMNL-------FVSAPGA   98 (265)
Q Consensus        26 ~~~~~d~~~~~w~~~~~~~p~~r~~~~~~~~~~~~~lyv~GG~~~~~~~~~~~~~~~~~~~~~yd~-------w~~~~~~   98 (265)
                      .+..+|+.+.+.......   ....+.+++.+ ++++|+....              .+.+.++|+       ....+..
T Consensus        65 ~v~viD~~t~~~~~~i~~---~~~p~~i~~~~-~g~lyv~~~~--------------~~~v~~iD~~t~~~~~~i~~g~~  126 (328)
T 3dsm_A           65 VIFAIDINTFKEVGRITG---FTSPRYIHFLS-DEKAYVTQIW--------------DYRIFIINPKTYEITGYIECPDM  126 (328)
T ss_dssp             EEEEEETTTCCEEEEEEC---CSSEEEEEEEE-TTEEEEEEBS--------------CSEEEEEETTTTEEEEEEECTTC
T ss_pred             EEEEEECcccEEEEEcCC---CCCCcEEEEeC-CCeEEEEECC--------------CCeEEEEECCCCeEEEEEEcCCc
Confidence            356677777665332322   22334444433 5599998631              367888888       1122221


Q ss_pred             CCC-ccccceEEEecCCCEEEEEcCcccCCCccccccCCceeEEEcCCCcEEEEecCCCCCCCcCceEEE-ECCEEEEEc
Q psy14331         99 PPP-RCSHQMVALSADKGQLWMFGGEFSSASESQFHHYKDLWVFRMGEKKWEKIVCKDTPPSRSGHRMIA-LKKHLVVFG  176 (265)
Q Consensus        99 p~~-r~~~~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~~~yd~~~~~W~~~~~~~~p~~~~~~~~~~-~~~~iyv~G  176 (265)
                      ... ...+..+. .  +++||+..-.          ..+.+.++|+.+++....-... ..+   +.++. -++++|+..
T Consensus       127 ~~~~~~p~~i~~-~--~~~lyv~~~~----------~~~~v~viD~~t~~~~~~i~~g-~~p---~~i~~~~dG~l~v~~  189 (328)
T 3dsm_A          127 DMESGSTEQMVQ-Y--GKYVYVNCWS----------YQNRILKIDTETDKVVDELTIG-IQP---TSLVMDKYNKMWTIT  189 (328)
T ss_dssp             CTTTCBCCCEEE-E--TTEEEEEECT----------TCCEEEEEETTTTEEEEEEECS-SCB---CCCEECTTSEEEEEB
T ss_pred             cccCCCcceEEE-E--CCEEEEEcCC----------CCCEEEEEECCCCeEEEEEEcC-CCc---cceEEcCCCCEEEEE
Confidence            100 02233333 3  8999998421          1356999999998765432222 122   22333 367888865


Q ss_pred             CccCCCCc-cccCCceEEEEcCCCceEEeccCCCCCCCCCCceEEEeC-CCeEEEEcC
Q psy14331        177 GFHDNLRE-AKYYNDVHIFDLETYAWKKIEPLGAGPAPRSGCQMAATP-DGKILISGG  232 (265)
Q Consensus       177 G~~~~~~~-~~~~~~v~~y~~~~~~W~~~~~~~~~p~~~~~~~~~~~~-~~~iyi~GG  232 (265)
                      -....... ..-.+.|+++|+.+.+....-..   +....-..++.-. ++.+|+..+
T Consensus       190 ~~~~~~~~~~~~~~~v~~id~~t~~v~~~~~~---~~g~~p~~la~~~d~~~lyv~~~  244 (328)
T 3dsm_A          190 DGGYEGSPYGYEAPSLYRIDAETFTVEKQFKF---KLGDWPSEVQLNGTRDTLYWINN  244 (328)
T ss_dssp             CCBCTTCSSCBCCCEEEEEETTTTEEEEEEEC---CTTCCCEEEEECTTSCEEEEESS
T ss_pred             CCCccCCccccCCceEEEEECCCCeEEEEEec---CCCCCceeEEEecCCCEEEEEcc
Confidence            32211100 00136799999998876543332   2222223343332 456777644

>3q7m_A Lipoprotein YFGL, BAMB; beta-propeller, BAM complex, outer membrane protein folding, negative, BAMA, protein binding; 1.65A {Escherichia coli} PDB: 3q7n_A 3q7o_A 3p1l_A 3prw_A 2yh3_A 3q54_A

Probab=95.91  E-value=0.56  Score=38.33  Aligned_cols=109  Identities=8%  Similarity=0.133  Sum_probs=62.3

Q ss_pred             eeEEecCCCEEEEECcEEeCCCceeeCCCcccCceEEEEe------eecCCCCCC------CccccceEEEecCCCEEEE
Q psy14331         52 SFLAHPDKDQLILFGGEFYDGQKFVFGSPKALDHLILMNL------FVSAPGAPP------PRCSHQMVALSADKGQLWM  119 (265)
Q Consensus        52 ~~~~~~~~~~lyv~GG~~~~~~~~~~~~~~~~~~~~~yd~------w~~~~~~p~------~r~~~~~~~~~~~~~~iyv  119 (265)
                      +.++  .++.||+...               ...+++||.      |........      .....+...+  .++.||+
T Consensus        48 ~p~v--~~~~v~~~~~---------------~g~v~a~d~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~--~~~~v~v  108 (376)
T 3q7m_A           48 HPAL--ADNVVYAADR---------------AGLVKALNADDGKEIWSVSLAEKDGWFSKEPALLSGGVTV--SGGHVYI  108 (376)
T ss_dssp             CCEE--ETTEEEEECT---------------TSEEEEEETTTCCEEEEEECCC---CCSCCCCCEEEEEEE--ETTEEEE
T ss_pred             ccEE--ECCEEEEEcC---------------CCeEEEEEccCCceeeeecCccccccccccCcccccCceE--eCCEEEE
Confidence            3444  3899998765               346777776      554322110      1111122223  2788888


Q ss_pred             EcCcccCCCccccccCCceeEEEcCCCc--EEEEecCCCCCCCcCceEEEECCEEEEEcCccCCCCccccCCceEEEEcC
Q psy14331        120 FGGEFSSASESQFHHYKDLWVFRMGEKK--WEKIVCKDTPPSRSGHRMIALKKHLVVFGGFHDNLREAKYYNDVHIFDLE  197 (265)
Q Consensus       120 ~GG~~~~~~~~~~~~~~~~~~yd~~~~~--W~~~~~~~~p~~~~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~v~~y~~~  197 (265)
                      ...            ...++++|..+++  |+.-...    . .....+..++.+|+...          ...++.+|+.
T Consensus       109 ~~~------------~g~l~a~d~~tG~~~W~~~~~~----~-~~~~p~~~~~~v~v~~~----------~g~l~~~d~~  161 (376)
T 3q7m_A          109 GSE------------KAQVYALNTSDGTVAWQTKVAG----E-ALSRPVVSDGLVLIHTS----------NGQLQALNEA  161 (376)
T ss_dssp             EET------------TSEEEEEETTTCCEEEEEECSS----C-CCSCCEEETTEEEEECT----------TSEEEEEETT
T ss_pred             EcC------------CCEEEEEECCCCCEEEEEeCCC----c-eEcCCEEECCEEEEEcC----------CCeEEEEECC
Confidence            643            2468999998764  7653221    1 12233455788877443          2469999998


Q ss_pred             CCc--eEEecc
Q psy14331        198 TYA--WKKIEP  206 (265)
Q Consensus       198 ~~~--W~~~~~  206 (265)
                      +.+  |+.-..
T Consensus       162 tG~~~W~~~~~  172 (376)
T 3q7m_A          162 DGAVKWTVNLD  172 (376)
T ss_dssp             TCCEEEEEECC
T ss_pred             CCcEEEEEeCC
Confidence            764  876544

>3vgz_A Uncharacterized protein YNCE; beta-propeller, protein binding; 1.70A {Escherichia coli} PDB: 3vh0_A*

Probab=95.70  E-value=0.62  Score=37.27  Aligned_cols=160  Identities=13%  Similarity=0.072  Sum_probs=84.5

Q ss_pred             HHHhhcccceEEEeccCCCCCCCceeeEEecCCCEEEEECcEEeCCCceeeCCCcccCceEEEEe------eecCCCCCC
Q psy14331         27 IEAEEKRKNKVIEKVVPEPTRRANFSFLAHPDKDQLILFGGEFYDGQKFVFGSPKALDHLILMNL------FVSAPGAPP  100 (265)
Q Consensus        27 ~~~~d~~~~~w~~~~~~~p~~r~~~~~~~~~~~~~lyv~GG~~~~~~~~~~~~~~~~~~~~~yd~------w~~~~~~p~  100 (265)
                      ++.+|..+.+-..... . .....+.+++.++++.+|+...               -+.+..+|+      +........
T Consensus       166 i~~~d~~~~~~~~~~~-~-~~~~~~~~~~s~dg~~l~~~~~---------------~~~i~~~d~~~~~~~~~~~~~~~~  228 (353)
T 3vgz_A          166 IWVVDGGNIKLKTAIQ-N-TGKMSTGLALDSEGKRLYTTNA---------------DGELITIDTADNKILSRKKLLDDG  228 (353)
T ss_dssp             EEEEETTTTEEEEEEC-C-CCTTCCCCEEETTTTEEEEECT---------------TSEEEEEETTTTEEEEEEECCCSS
T ss_pred             EEEEcCCCCceEEEec-C-CCCccceEEECCCCCEEEEEcC---------------CCeEEEEECCCCeEEEEEEcCCCC
Confidence            6667777666543222 1 1222345566667888888755               356778887      111111111


Q ss_pred             CccccceEEEecCCCEEEEEcCcccCCCccccccCCceeEEEcCCCcEEEEecCCCCCCCcCceEEEE--CCEEEEEcCc
Q psy14331        101 PRCSHQMVALSADKGQLWMFGGEFSSASESQFHHYKDLWVFRMGEKKWEKIVCKDTPPSRSGHRMIAL--KKHLVVFGGF  178 (265)
Q Consensus       101 ~r~~~~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~~~yd~~~~~W~~~~~~~~p~~~~~~~~~~~--~~~iyv~GG~  178 (265)
                      +......+.+...++.||+....           .+.+.++|+.+++....-...  .+   ..++..  ++.+|+....
T Consensus       229 ~~~~~~~~~~s~dg~~l~~~~~~-----------~~~v~~~d~~~~~~~~~~~~~--~~---~~~~~s~dg~~l~v~~~~  292 (353)
T 3vgz_A          229 KEHFFINISLDTARQRAFITDSK-----------AAEVLVVDTRNGNILAKVAAP--ES---LAVLFNPARNEAYVTHRQ  292 (353)
T ss_dssp             SCCCEEEEEEETTTTEEEEEESS-----------SSEEEEEETTTCCEEEEEECS--SC---CCEEEETTTTEEEEEETT
T ss_pred             CCcccceEEECCCCCEEEEEeCC-----------CCEEEEEECCCCcEEEEEEcC--CC---ceEEECCCCCEEEEEECC
Confidence            22222234454456678777532           367999999888754433332  22   123332  4467776543


Q ss_pred             cCCCCccccCCceEEEEcCCCceEEeccCCCCCCCCCCceEEEeCCCe-EEEEcCc
Q psy14331        179 HDNLREAKYYNDVHIFDLETYAWKKIEPLGAGPAPRSGCQMAATPDGK-ILISGGY  233 (265)
Q Consensus       179 ~~~~~~~~~~~~v~~y~~~~~~W~~~~~~~~~p~~~~~~~~~~~~~~~-iyi~GG~  233 (265)
                               .+.|..+|+.+.+....-..+     ..-..++...+++ +|+....
T Consensus       293 ---------~~~v~~~d~~~~~~~~~~~~~-----~~~~~~~~s~dg~~l~v~~~~  334 (353)
T 3vgz_A          293 ---------AGKVSVIDAKSYKVVKTFDTP-----THPNSLALSADGKTLYVSVKQ  334 (353)
T ss_dssp             ---------TTEEEEEETTTTEEEEEEECC-----SEEEEEEECTTSCEEEEEEEC
T ss_pred             ---------CCeEEEEECCCCeEEEEEecC-----CCCCeEEEcCCCCEEEEEEcc
Confidence                     256899999887654433321     1223344444555 7776543

>1l0q_A Surface layer protein; SLP, S-layer, 7-bladed beta-propeller superfamily, protein binding; HET: YCM; 2.40A {Methanosarcina mazei} SCOP: b.1.3.1 b.69.2.3

Probab=95.66  E-value=0.16  Score=41.59  Aligned_cols=138  Identities=17%  Similarity=0.125  Sum_probs=72.1

Q ss_pred             HHHhhcccceEEEeccCCCCCCCceeeEEecCCCEEEEECcEEeCCCceeeCCCcccCceEEEEe--eecCCCCCCCccc
Q psy14331         27 IEAEEKRKNKVIEKVVPEPTRRANFSFLAHPDKDQLILFGGEFYDGQKFVFGSPKALDHLILMNL--FVSAPGAPPPRCS  104 (265)
Q Consensus        27 ~~~~d~~~~~w~~~~~~~p~~r~~~~~~~~~~~~~lyv~GG~~~~~~~~~~~~~~~~~~~~~yd~--w~~~~~~p~~r~~  104 (265)
                      +..+|..+.+......   ....-.++++.++++.+|+.++.              -..+..+|+  -.....++... .
T Consensus        14 v~v~d~~~~~~~~~~~---~~~~~~~~~~s~dg~~l~~~~~~--------------d~~i~v~d~~~~~~~~~~~~~~-~   75 (391)
T 1l0q_A           14 ISVIDVTSNKVTATIP---VGSNPMGAVISPDGTKVYVANAH--------------SNDVSIIDTATNNVIATVPAGS-S   75 (391)
T ss_dssp             EEEEETTTTEEEEEEE---CSSSEEEEEECTTSSEEEEEEGG--------------GTEEEEEETTTTEEEEEEECSS-S
T ss_pred             EEEEECCCCeEEEEee---cCCCcceEEECCCCCEEEEECCC--------------CCeEEEEECCCCeEEEEEECCC-C
Confidence            5566766665543222   11223455666677778887752              346777777  11111111111 2


Q ss_pred             cceEEEecCCCEEEEEcCcccCCCccccccCCceeEEEcCCCcEEEEecCCCCCCCcCceEEEE--CCEEEEEcCccCCC
Q psy14331        105 HQMVALSADKGQLWMFGGEFSSASESQFHHYKDLWVFRMGEKKWEKIVCKDTPPSRSGHRMIAL--KKHLVVFGGFHDNL  182 (265)
Q Consensus       105 ~~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~~~yd~~~~~W~~~~~~~~p~~~~~~~~~~~--~~~iyv~GG~~~~~  182 (265)
                      ...+.+...++.||+.+..           -..+.++|+.+++-...-...    ....+++..  ++.+|+.++.    
T Consensus        76 v~~~~~spdg~~l~~~~~~-----------~~~v~v~d~~~~~~~~~~~~~----~~~~~~~~s~dg~~l~~~~~~----  136 (391)
T 1l0q_A           76 PQGVAVSPDGKQVYVTNMA-----------SSTLSVIDTTSNTVAGTVKTG----KSPLGLALSPDGKKLYVTNNG----  136 (391)
T ss_dssp             EEEEEECTTSSEEEEEETT-----------TTEEEEEETTTTEEEEEEECS----SSEEEEEECTTSSEEEEEETT----
T ss_pred             ccceEECCCCCEEEEEECC-----------CCEEEEEECCCCeEEEEEeCC----CCcceEEECCCCCEEEEEeCC----
Confidence            2233343345567666542           256899999988654433221    111233332  3467776653    


Q ss_pred             CccccCCceEEEEcCCCceEEecc
Q psy14331        183 REAKYYNDVHIFDLETYAWKKIEP  206 (265)
Q Consensus       183 ~~~~~~~~v~~y~~~~~~W~~~~~  206 (265)
                           .+.|..+|+.+.+....-.
T Consensus       137 -----~~~v~~~d~~~~~~~~~~~  155 (391)
T 1l0q_A          137 -----DKTVSVINTVTKAVINTVS  155 (391)
T ss_dssp             -----TTEEEEEETTTTEEEEEEE
T ss_pred             -----CCEEEEEECCCCcEEEEEe
Confidence                 2468999998876654433

>3nok_A Glutaminyl cyclase; beta-propeller, cyclotransferase, pyrogl transferase; HET: MES DDQ; 1.65A {Myxococcus xanthus}

Probab=95.43  E-value=0.4  Score=37.59  Aligned_cols=89  Identities=10%  Similarity=0.038  Sum_probs=59.2

Q ss_pred             CCEEEEEcCcccCCCccccccCCceeEEEcCCCcEEEEecCCCCCCCcCceEEEECCEEEEEcCccCCCCccccCCceEE
Q psy14331        114 KGQLWMFGGEFSSASESQFHHYKDLWVFRMGEKKWEKIVCKDTPPSRSGHRMIALKKHLVVFGGFHDNLREAKYYNDVHI  193 (265)
Q Consensus       114 ~~~iyv~GG~~~~~~~~~~~~~~~~~~yd~~~~~W~~~~~~~~p~~~~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~v~~  193 (265)
                      ++.||+..|..           ..+.++|+++++-..-- .  |..-++.+++..+++||+....         .+.+++
T Consensus        64 ~~~Ly~stG~~-----------g~v~~iD~~Tgkv~~~~-l--~~~~FgeGit~~g~~Ly~ltw~---------~~~v~V  120 (268)
T 3nok_A           64 QGHFFESTGHQ-----------GTLRQLSLESAQPVWME-R--LGNIFAEGLASDGERLYQLTWT---------EGLLFT  120 (268)
T ss_dssp             TTEEEEEETTT-----------TEEEECCSSCSSCSEEE-E--CTTCCEEEEEECSSCEEEEESS---------SCEEEE
T ss_pred             CCEEEEEcCCC-----------CEEEEEECCCCcEEeEE-C--CCCcceeEEEEeCCEEEEEEcc---------CCEEEE
Confidence            78999999863           34889999988644332 2  3344555677789999998553         367999


Q ss_pred             EEcCCCceE-EeccCCCCCCCCCCceEEEeCCCeEEEEcC
Q psy14331        194 FDLETYAWK-KIEPLGAGPAPRSGCQMAATPDGKILISGG  232 (265)
Q Consensus       194 y~~~~~~W~-~~~~~~~~p~~~~~~~~~~~~~~~iyi~GG  232 (265)
                      ||+.+.+-. +++.      +..+.+++.- ++.+|+.-|
T Consensus       121 ~D~~Tl~~~~ti~~------~~eGwGLt~D-g~~L~vSdG  153 (268)
T 3nok_A          121 WSGMPPQRERTTRY------SGEGWGLCYW-NGKLVRSDG  153 (268)
T ss_dssp             EETTTTEEEEEEEC------SSCCCCEEEE-TTEEEEECS
T ss_pred             EECCcCcEEEEEeC------CCceeEEecC-CCEEEEECC
Confidence            999886543 3333      1234555533 668888866

>1l0q_A Surface layer protein; SLP, S-layer, 7-bladed beta-propeller superfamily, protein binding; HET: YCM; 2.40A {Methanosarcina mazei} SCOP: b.1.3.1 b.69.2.3

Probab=94.91  E-value=0.34  Score=39.62  Aligned_cols=137  Identities=18%  Similarity=0.110  Sum_probs=71.6

Q ss_pred             HHHHhhcccceEEEeccCCCCCCCceeeEEecCCCEEEEECcEEeCCCceeeCCCcccCceEEEEe--eecCCCCCCCcc
Q psy14331         26 DIEAEEKRKNKVIEKVVPEPTRRANFSFLAHPDKDQLILFGGEFYDGQKFVFGSPKALDHLILMNL--FVSAPGAPPPRC  103 (265)
Q Consensus        26 ~~~~~d~~~~~w~~~~~~~p~~r~~~~~~~~~~~~~lyv~GG~~~~~~~~~~~~~~~~~~~~~yd~--w~~~~~~p~~r~  103 (265)
                      .+..+|..+.+...... .+  ..-..+++.++++.||+.+..              -..+.++|+  -.....+.....
T Consensus        55 ~i~v~d~~~~~~~~~~~-~~--~~v~~~~~spdg~~l~~~~~~--------------~~~v~v~d~~~~~~~~~~~~~~~  117 (391)
T 1l0q_A           55 DVSIIDTATNNVIATVP-AG--SSPQGVAVSPDGKQVYVTNMA--------------SSTLSVIDTTSNTVAGTVKTGKS  117 (391)
T ss_dssp             EEEEEETTTTEEEEEEE-CS--SSEEEEEECTTSSEEEEEETT--------------TTEEEEEETTTTEEEEEEECSSS
T ss_pred             eEEEEECCCCeEEEEEE-CC--CCccceEECCCCCEEEEEECC--------------CCEEEEEECCCCeEEEEEeCCCC
Confidence            35667776666544221 11  133445565667778777651              256788887  111111111111


Q ss_pred             ccceEEEecCCCEEEEEcCcccCCCccccccCCceeEEEcCCCcEEEEecCCCCCCCcCceEEEE--CCEEEEEcCccCC
Q psy14331        104 SHQMVALSADKGQLWMFGGEFSSASESQFHHYKDLWVFRMGEKKWEKIVCKDTPPSRSGHRMIAL--KKHLVVFGGFHDN  181 (265)
Q Consensus       104 ~~~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~~~yd~~~~~W~~~~~~~~p~~~~~~~~~~~--~~~iyv~GG~~~~  181 (265)
                       ...+.+...++.||+.++.           -+.+..+|+.+++....-...    ..-..++..  ++.+|+.++.   
T Consensus       118 -~~~~~~s~dg~~l~~~~~~-----------~~~v~~~d~~~~~~~~~~~~~----~~~~~~~~~~dg~~l~~~~~~---  178 (391)
T 1l0q_A          118 -PLGLALSPDGKKLYVTNNG-----------DKTVSVINTVTKAVINTVSVG----RSPKGIAVTPDGTKVYVANFD---  178 (391)
T ss_dssp             -EEEEEECTTSSEEEEEETT-----------TTEEEEEETTTTEEEEEEECC----SSEEEEEECTTSSEEEEEETT---
T ss_pred             -cceEEECCCCCEEEEEeCC-----------CCEEEEEECCCCcEEEEEecC----CCcceEEECCCCCEEEEEeCC---
Confidence             1233343344567777653           256889999888765443221    111222222  3467776653   


Q ss_pred             CCccccCCceEEEEcCCCceEEe
Q psy14331        182 LREAKYYNDVHIFDLETYAWKKI  204 (265)
Q Consensus       182 ~~~~~~~~~v~~y~~~~~~W~~~  204 (265)
                            -..|..+|+.+.+-...
T Consensus       179 ------~~~v~~~d~~~~~~~~~  195 (391)
T 1l0q_A          179 ------SMSISVIDTVTNSVIDT  195 (391)
T ss_dssp             ------TTEEEEEETTTTEEEEE
T ss_pred             ------CCEEEEEECCCCeEEEE
Confidence                  24688999988765433

>1ri6_A Putative isomerase YBHE; 7-bladed propeller, enzyme, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 2.00A {Escherichia coli} SCOP: b.69.11.1

Probab=94.76  E-value=1.2  Score=35.24  Aligned_cols=122  Identities=13%  Similarity=0.116  Sum_probs=58.4

Q ss_pred             ceeeEEecCCCEEEEECcEEeCCCceeeCCCcccCceEEEEe-----eec----CCCCCCCccccceEEEecCCCEEEEE
Q psy14331         50 NFSFLAHPDKDQLILFGGEFYDGQKFVFGSPKALDHLILMNL-----FVS----APGAPPPRCSHQMVALSADKGQLWMF  120 (265)
Q Consensus        50 ~~~~~~~~~~~~lyv~GG~~~~~~~~~~~~~~~~~~~~~yd~-----w~~----~~~~p~~r~~~~~~~~~~~~~~iyv~  120 (265)
                      .+.+++.++++.+|+.+..              -..+..||+     ...    ....+... ....+.+...++.+|+.
T Consensus       131 ~~~~~~s~dg~~l~~~~~~--------------~~~v~~~d~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~pdg~~l~~~  195 (343)
T 1ri6_A          131 CHSANISPDNRTLWVPALK--------------QDRICLFTVSDDGHLVAQDPAEVTTVEGA-GPRHMVFHPNEQYAYCV  195 (343)
T ss_dssp             BCCCEECTTSSEEEEEEGG--------------GTEEEEEEECTTSCEEEEEEEEEECSTTC-CEEEEEECTTSSEEEEE
T ss_pred             ceEEEECCCCCEEEEecCC--------------CCEEEEEEecCCCceeeecccccccCCCC-CcceEEECCCCCEEEEE
Confidence            4456666667788877621              245666666     110    00111111 11123344444567777


Q ss_pred             cCcccCCCccccccCCceeEEEcC--CCcEEEEecCC-CCCC---CcCceEEEE---CCEEEEEcCccCCCCccccCCce
Q psy14331        121 GGEFSSASESQFHHYKDLWVFRMG--EKKWEKIVCKD-TPPS---RSGHRMIAL---KKHLVVFGGFHDNLREAKYYNDV  191 (265)
Q Consensus       121 GG~~~~~~~~~~~~~~~~~~yd~~--~~~W~~~~~~~-~p~~---~~~~~~~~~---~~~iyv~GG~~~~~~~~~~~~~v  191 (265)
                      +..           .+.+..||..  ++++....... .|..   ........+   ++.+|+.+..         .+.+
T Consensus       196 ~~~-----------~~~i~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i~~s~dg~~l~v~~~~---------~~~i  255 (343)
T 1ri6_A          196 NEL-----------NSSVDVWELKDPHGNIECVQTLDMMPENFSDTRWAADIHITPDGRHLYACDRT---------ASLI  255 (343)
T ss_dssp             ETT-----------TTEEEEEESSCTTSCCEEEEEEECSCTTCCSCCCEEEEEECTTSSEEEEEETT---------TTEE
T ss_pred             eCC-----------CCEEEEEEecCCCCcEEEEeeccccCccccccCCccceEECCCCCEEEEEecC---------CCEE
Confidence            542           2457788874  45544332211 1121   111112233   3467665432         2467


Q ss_pred             EEEEcC--CCceEEecc
Q psy14331        192 HIFDLE--TYAWKKIEP  206 (265)
Q Consensus       192 ~~y~~~--~~~W~~~~~  206 (265)
                      ..||+.  +.+++.+..
T Consensus       256 ~v~d~~~~~~~~~~~~~  272 (343)
T 1ri6_A          256 TVFSVSEDGSVLSKEGF  272 (343)
T ss_dssp             EEEEECTTSCCEEEEEE
T ss_pred             EEEEEcCCCCceEEeee
Confidence            888887  556666654

>2iwa_A Glutamine cyclotransferase; pyroglutamate, acyltransferase, glutaminyl CYCL N-terminal cyclisation; HET: NAG; 1.6A {Carica papaya} PDB: 2faw_A*

Probab=94.53  E-value=1.3  Score=34.68  Aligned_cols=93  Identities=20%  Similarity=0.178  Sum_probs=57.8

Q ss_pred             CCEEEEEcCcccCCCccccccCCceeEEEcCCCcEEEEecCCCCCCCcCceEEEECCEEEEEcCccCCCCccccCCceEE
Q psy14331        114 KGQLWMFGGEFSSASESQFHHYKDLWVFRMGEKKWEKIVCKDTPPSRSGHRMIALKKHLVVFGGFHDNLREAKYYNDVHI  193 (265)
Q Consensus       114 ~~~iyv~GG~~~~~~~~~~~~~~~~~~yd~~~~~W~~~~~~~~p~~~~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~v~~  193 (265)
                      ++.||+..|...         .+.+.++|+.+++-...-+.  +...+..+++..++++|+..-.         .+.+.+
T Consensus        31 dg~Lyvstg~~~---------~s~v~~iD~~tg~v~~~i~l--~~~~fgeGi~~~g~~lyv~t~~---------~~~v~v   90 (266)
T 2iwa_A           31 NDTLFESTGLYG---------RSSVRQVALQTGKVENIHKM--DDSYFGEGLTLLNEKLYQVVWL---------KNIGFI   90 (266)
T ss_dssp             TTEEEEEECSTT---------TCEEEEEETTTCCEEEEEEC--CTTCCEEEEEEETTEEEEEETT---------CSEEEE
T ss_pred             CCeEEEECCCCC---------CCEEEEEECCCCCEEEEEec--CCCcceEEEEEeCCEEEEEEec---------CCEEEE
Confidence            389999877421         36799999999875543333  2333445667778899998643         357899


Q ss_pred             EEcCCCceEEeccCCCCCCC-CCCceEEEeCCCeEEEEcC
Q psy14331        194 FDLETYAWKKIEPLGAGPAP-RSGCQMAATPDGKILISGG  232 (265)
Q Consensus       194 y~~~~~~W~~~~~~~~~p~~-~~~~~~~~~~~~~iyi~GG  232 (265)
                      ||+.+.+=  +...   |.+ ..+.+++ ..++++|+.-|
T Consensus        91 iD~~t~~v--~~~i---~~g~~~g~glt-~Dg~~l~vs~g  124 (266)
T 2iwa_A           91 YDRRTLSN--IKNF---THQMKDGWGLA-TDGKILYGSDG  124 (266)
T ss_dssp             EETTTTEE--EEEE---ECCSSSCCEEE-ECSSSEEEECS
T ss_pred             EECCCCcE--EEEE---ECCCCCeEEEE-ECCCEEEEECC
Confidence            99987543  2221   111 2234443 33567888765

>2iwa_A Glutamine cyclotransferase; pyroglutamate, acyltransferase, glutaminyl CYCL N-terminal cyclisation; HET: NAG; 1.6A {Carica papaya} PDB: 2faw_A*

Probab=94.52  E-value=1.3  Score=34.68  Aligned_cols=112  Identities=13%  Similarity=0.019  Sum_probs=65.2

Q ss_pred             ceeeEEecCCCEEEEECcEEeCCCceeeCCCcccCceEEEEe----eecCCCCCCCccccceEEEecCCCEEEEEcCccc
Q psy14331         50 NFSFLAHPDKDQLILFGGEFYDGQKFVFGSPKALDHLILMNL----FVSAPGAPPPRCSHQMVALSADKGQLWMFGGEFS  125 (265)
Q Consensus        50 ~~~~~~~~~~~~lyv~GG~~~~~~~~~~~~~~~~~~~~~yd~----w~~~~~~p~~r~~~~~~~~~~~~~~iyv~GG~~~  125 (265)
                      .+.+.+.+ ++.||+..|.  .+          .+.+..+|+    -...-+++........+..   +++||+..-.  
T Consensus        23 ~~Gl~~~~-dg~Lyvstg~--~~----------~s~v~~iD~~tg~v~~~i~l~~~~fgeGi~~~---g~~lyv~t~~--   84 (266)
T 2iwa_A           23 TQGLVYAE-NDTLFESTGL--YG----------RSSVRQVALQTGKVENIHKMDDSYFGEGLTLL---NEKLYQVVWL--   84 (266)
T ss_dssp             EEEEEECS-TTEEEEEECS--TT----------TCEEEEEETTTCCEEEEEECCTTCCEEEEEEE---TTEEEEEETT--
T ss_pred             cccEEEeC-CCeEEEECCC--CC----------CCEEEEEECCCCCEEEEEecCCCcceEEEEEe---CCEEEEEEec--
Confidence            36677653 3799998772  11          367888998    1111112222232333333   7899999543  


Q ss_pred             CCCccccccCCceeEEEcCCCcEEEEecCCCCCCCcCceEEEECCEEEEEcCccCCCCccccCCceEEEEcCCCce
Q psy14331        126 SASESQFHHYKDLWVFRMGEKKWEKIVCKDTPPSRSGHRMIALKKHLVVFGGFHDNLREAKYYNDVHIFDLETYAW  201 (265)
Q Consensus       126 ~~~~~~~~~~~~~~~yd~~~~~W~~~~~~~~p~~~~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~v~~y~~~~~~W  201 (265)
                               .+.+++||+.+.+=..  ..+.+. -.+.+++..++.+|+.-|          .+.++.+|+.+.+-
T Consensus        85 ---------~~~v~viD~~t~~v~~--~i~~g~-~~g~glt~Dg~~l~vs~g----------s~~l~viD~~t~~v  138 (266)
T 2iwa_A           85 ---------KNIGFIYDRRTLSNIK--NFTHQM-KDGWGLATDGKILYGSDG----------TSILYEIDPHTFKL  138 (266)
T ss_dssp             ---------CSEEEEEETTTTEEEE--EEECCS-SSCCEEEECSSSEEEECS----------SSEEEEECTTTCCE
T ss_pred             ---------CCEEEEEECCCCcEEE--EEECCC-CCeEEEEECCCEEEEECC----------CCeEEEEECCCCcE
Confidence                     4679999998774322  221111 123345555678888654          35799999988653

>3q7m_A Lipoprotein YFGL, BAMB; beta-propeller, BAM complex, outer membrane protein folding, negative, BAMA, protein binding; 1.65A {Escherichia coli} PDB: 3q7n_A 3q7o_A 3p1l_A 3prw_A 2yh3_A 3q54_A

Probab=94.37  E-value=1.7  Score=35.34  Aligned_cols=62  Identities=10%  Similarity=0.259  Sum_probs=40.4

Q ss_pred             CCEEEEEcCcccCCCccccccCCceeEEEcCCCc--EEEEecCCCCCCCcCceEEEECCEEEEEcCccCCCCccccCCce
Q psy14331        114 KGQLWMFGGEFSSASESQFHHYKDLWVFRMGEKK--WEKIVCKDTPPSRSGHRMIALKKHLVVFGGFHDNLREAKYYNDV  191 (265)
Q Consensus       114 ~~~iyv~GG~~~~~~~~~~~~~~~~~~yd~~~~~--W~~~~~~~~p~~~~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~v  191 (265)
                      ++.+|+.+.            ...+..+|+.+++  |+.-  ..  .   ....+..++.+|+...          ...+
T Consensus       239 ~~~v~~~~~------------~g~l~~~d~~tG~~~w~~~--~~--~---~~~~~~~~~~l~~~~~----------~g~l  289 (376)
T 3q7m_A          239 NGVVFALAY------------NGNLTALDLRSGQIMWKRE--LG--S---VNDFIVDGNRIYLVDQ----------NDRV  289 (376)
T ss_dssp             TTEEEEECT------------TSCEEEEETTTCCEEEEEC--CC--C---EEEEEEETTEEEEEET----------TCCE
T ss_pred             CCEEEEEec------------CcEEEEEECCCCcEEeecc--CC--C---CCCceEECCEEEEEcC----------CCeE
Confidence            788888652            2458899998764  6542  11  1   2245556888988653          2468


Q ss_pred             EEEEcCCCc--eEEe
Q psy14331        192 HIFDLETYA--WKKI  204 (265)
Q Consensus       192 ~~y~~~~~~--W~~~  204 (265)
                      +++|+.+.+  |+.-
T Consensus       290 ~~~d~~tG~~~w~~~  304 (376)
T 3q7m_A          290 MALTIDGGVTLWTQS  304 (376)
T ss_dssp             EEEETTTCCEEEEEC
T ss_pred             EEEECCCCcEEEeec
Confidence            999998765  7654

>2hqs_A Protein TOLB; TOLB, PAL, TOL, transport protein-lipoprotein complex; 1.50A {Escherichia coli} SCOP: b.68.4.1 c.51.2.1 PDB: 3iax_A 1c5k_A 2ivz_A 2w8b_B 2w8b_A 1crz_A

Probab=94.32  E-value=1.3  Score=36.83  Aligned_cols=165  Identities=13%  Similarity=0.103  Sum_probs=80.8

Q ss_pred             HHHHhhcccceEEEeccCCCCCCCceeeEEecCCCEEEEECcEEeCCCceeeCCCcccCceEEEEe----eecCCCCCCC
Q psy14331         26 DIEAEEKRKNKVIEKVVPEPTRRANFSFLAHPDKDQLILFGGEFYDGQKFVFGSPKALDHLILMNL----FVSAPGAPPP  101 (265)
Q Consensus        26 ~~~~~d~~~~~w~~~~~~~p~~r~~~~~~~~~~~~~lyv~GG~~~~~~~~~~~~~~~~~~~~~yd~----w~~~~~~p~~  101 (265)
                      .++.+|..+.+...+ ...+  ....+..+-|++..|++.+.  .++          ...++.+|+    .......+  
T Consensus       204 ~i~~~d~~tg~~~~l-~~~~--~~~~~~~~spdg~~la~~~~--~~g----------~~~i~~~d~~~~~~~~l~~~~--  266 (415)
T 2hqs_A          204 ALVIQTLANGAVRQV-ASFP--RHNGAPAFSPDGSKLAFALS--KTG----------SLNLYVMDLASGQIRQVTDGR--  266 (415)
T ss_dssp             EEEEEETTTCCEEEE-ECCS--SCEEEEEECTTSSEEEEEEC--TTS----------SCEEEEEETTTCCEEECCCCS--
T ss_pred             EEEEEECCCCcEEEe-ecCC--CcccCEEEcCCCCEEEEEEe--cCC----------CceEEEEECCCCCEEeCcCCC--
Confidence            355667666665442 2111  12334555566666775554  111          356888887    22222111  


Q ss_pred             ccccceEEEecCCCEEEEEcCcccCCCccccccCCceeEEEcCCCcEEEEecCCCCCCCcCceEEE-ECCEEEEEcCccC
Q psy14331        102 RCSHQMVALSADKGQLWMFGGEFSSASESQFHHYKDLWVFRMGEKKWEKIVCKDTPPSRSGHRMIA-LKKHLVVFGGFHD  180 (265)
Q Consensus       102 r~~~~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~~~yd~~~~~W~~~~~~~~p~~~~~~~~~~-~~~~iyv~GG~~~  180 (265)
                       ...........+..|++.+... .        ...++.+|+.+++-..+...    ......++. -+++.+++++...
T Consensus       267 -~~~~~~~~spdg~~l~~~s~~~-g--------~~~i~~~d~~~~~~~~l~~~----~~~~~~~~~spdG~~l~~~~~~~  332 (415)
T 2hqs_A          267 -SNNTEPTWFPDSQNLAFTSDQA-G--------RPQVYKVNINGGAPQRITWE----GSQNQDADVSSDGKFMVMVSSNG  332 (415)
T ss_dssp             -SCEEEEEECTTSSEEEEEECTT-S--------SCEEEEEETTSSCCEECCCS----SSEEEEEEECTTSSEEEEEEECS
T ss_pred             -CcccceEECCCCCEEEEEECCC-C--------CcEEEEEECCCCCEEEEecC----CCcccCeEECCCCCEEEEEECcC
Confidence             1122233333333454443221 1        34689999988765443221    111112222 1455455554322


Q ss_pred             CCCccccCCceEEEEcCCCceEEeccCCCCCCCCCCceEEEeCCCeEEEEcCc
Q psy14331        181 NLREAKYYNDVHIFDLETYAWKKIEPLGAGPAPRSGCQMAATPDGKILISGGY  233 (265)
Q Consensus       181 ~~~~~~~~~~v~~y~~~~~~W~~~~~~~~~p~~~~~~~~~~~~~~~iyi~GG~  233 (265)
                      .      ...|+.+|+.+.+...+...   .   .........+++.+++++.
T Consensus       333 g------~~~i~~~d~~~~~~~~l~~~---~---~~~~~~~spdg~~l~~~s~  373 (415)
T 2hqs_A          333 G------QQHIAKQDLATGGVQVLSST---F---LDETPSLAPNGTMVIYSSS  373 (415)
T ss_dssp             S------CEEEEEEETTTCCEEECCCS---S---SCEEEEECTTSSEEEEEEE
T ss_pred             C------ceEEEEEECCCCCEEEecCC---C---CcCCeEEcCCCCEEEEEEc
Confidence            1      24789999999887665542   1   2233334446776666654

>3ju4_A Endo-N-acetylneuraminidase; endonf, polysia, high-resolution, glycosidase, hydrolase; HET: SLB; 0.98A {Enterobacteria phage K1F} PDB: 3gvl_A* 3gvj_A* 3gvk_A* 1v0e_A 1v0f_A*

Probab=93.90  E-value=2.4  Score=35.30  Aligned_cols=117  Identities=15%  Similarity=0.216  Sum_probs=63.6

Q ss_pred             CCCEEEEEcCcccCCCccccccCCceeEEEcCCCcEEEEecCCCCCCCcCceEEEECCEEEEEcCccCCCCcc------c
Q psy14331        113 DKGQLWMFGGEFSSASESQFHHYKDLWVFRMGEKKWEKIVCKDTPPSRSGHRMIALKKHLVVFGGFHDNLREA------K  186 (265)
Q Consensus       113 ~~~~iyv~GG~~~~~~~~~~~~~~~~~~yd~~~~~W~~~~~~~~p~~~~~~~~~~~~~~iyv~GG~~~~~~~~------~  186 (265)
                      .+++||+.-..+...     .+-+.+.+-+.....|+.+.... .......-.+.+++.||+||-....+++.      .
T Consensus       347 YdgvLyLtTRgt~~~-----~~GS~L~rs~d~Gq~w~slrfp~-nvHhtnlPFakvgD~l~mFgsERA~nEWE~G~pD~R  420 (670)
T 3ju4_A          347 YDGVLYLITRGTRGD-----RLGSSLHRSRDIGQTWESLRFPH-NVHHTTLPFAKVGDDLIMFGSERAENEWEAGAPDDR  420 (670)
T ss_dssp             ETTEEEEEEEESCTT-----SCCCEEEEESSTTSSCEEEECTT-CCCSSCCCEEEETTEEEEEEECSSTTCSSTTCCCCC
T ss_pred             hCCEEEEEecCcCCC-----CCcceeeeecccCCchhheeccc-cccccCCCcceeCCEEEEEeccccccccccCCCccc
Confidence            389999986443221     12355667777778899997542 11222234567899999999653322211      0


Q ss_pred             ----cCCceE-E-----EEcCCCceEEeccC---CCCCCCCCCceEEEeCCCeEE-EEcCccc
Q psy14331        187 ----YYNDVH-I-----FDLETYAWKKIEPL---GAGPAPRSGCQMAATPDGKIL-ISGGYSK  235 (265)
Q Consensus       187 ----~~~~v~-~-----y~~~~~~W~~~~~~---~~~p~~~~~~~~~~~~~~~iy-i~GG~~~  235 (265)
                          +-...+ +     ++.+.-.|..+...   +..-..-.+-+.+++.++.|| ||||.+.
T Consensus       421 Y~a~yPRtF~~r~nv~~W~~d~~ew~nItdqIYqG~ivNsavGVGSv~vKD~~lyyiFGgEd~  483 (670)
T 3ju4_A          421 YKASYPRTFYARLNVNNWNADDIEWVNITDQIYQGGIVNSGVGVGSVVVKDNYIYYMFGGEDH  483 (670)
T ss_dssp             SSCBCCEEEEEEEETTTCCCTTCCCEEEEECBBCCSSSCCCSEEEEEEEETTEEEEEEEEBCS
T ss_pred             ccccCCceEEEEeecccCCccceEEEEeecceeccccccccccceeEEEeCCEEEEEecCccc
Confidence                111111 1     22344568777652   111122233344566678765 8999764

>1pex_A Collagenase-3, MMP-13; C-terminal hemopexin-like domain of matrix- metalloproteinase, metalloprotease; 2.70A {Homo sapiens} SCOP: b.66.1.1

Probab=93.58  E-value=1.7  Score=32.60  Aligned_cols=64  Identities=14%  Similarity=0.215  Sum_probs=39.7

Q ss_pred             CCCEEEEEcCcccCCCccccccCCceeEEEcCCCcEEE-----Ee-cC-CCCCCCcCceEEEECCEEEEEcCccCCCCcc
Q psy14331        113 DKGQLWMFGGEFSSASESQFHHYKDLWVFRMGEKKWEK-----IV-CK-DTPPSRSGHRMIALKKHLVVFGGFHDNLREA  185 (265)
Q Consensus       113 ~~~~iyv~GG~~~~~~~~~~~~~~~~~~yd~~~~~W~~-----~~-~~-~~p~~~~~~~~~~~~~~iyv~GG~~~~~~~~  185 (265)
                      .++++|++-|             +..|+||..+++-..     +. .. ..|.  .-.++...++++|.|-|        
T Consensus       126 ~~gk~yfFkG-------------~~ywr~d~~~~~~d~gyPr~i~~~~~Gip~--~iDaAf~~~g~~YfFkg--------  182 (207)
T 1pex_A          126 DTGKTLLFSG-------------NQVWRYDDTNHIMDKDYPRLIEEDFPGIGD--KVDAVYEKNGYIYFFNG--------  182 (207)
T ss_dssp             TTSEEEEEET-------------TEEEEEETTTTEECSSCCCBHHHHSTTSCS--CCSEEEEETTEEEEEET--------
T ss_pred             CCCEEEEEeC-------------CEEEEEeCcCccccCCCCccHHHcCCCCCC--CccEEEEcCCcEEEEEC--------
Confidence            3589999977             458999987653211     00 01 1222  22345556899999977        


Q ss_pred             ccCCceEEEEcCCCceE
Q psy14331        186 KYYNDVHIFDLETYAWK  202 (265)
Q Consensus       186 ~~~~~v~~y~~~~~~W~  202 (265)
                         +..|+||..+.+=.
T Consensus       183 ---~~y~rf~~~~~~v~  196 (207)
T 1pex_A          183 ---PIQFEYSIWSNRIV  196 (207)
T ss_dssp             ---TEEEEEETTTTEEE
T ss_pred             ---CEEEEEeCCccEEe
Confidence               46888988776543

>3bws_A Protein LP49; two-domain, immunoglobulin-like, 7-bladed beta propeller, unknown function; 1.99A {Leptospira interrogans}

Probab=93.47  E-value=1.5  Score=36.22  Aligned_cols=142  Identities=12%  Similarity=0.085  Sum_probs=65.9

Q ss_pred             HHHhhcccceEEEeccCCCCCCCceeeEEecCCCEEEEECcEEeCCCceeeCCCcccCceEEEEe--eecCCCCCCCccc
Q psy14331         27 IEAEEKRKNKVIEKVVPEPTRRANFSFLAHPDKDQLILFGGEFYDGQKFVFGSPKALDHLILMNL--FVSAPGAPPPRCS  104 (265)
Q Consensus        27 ~~~~d~~~~~w~~~~~~~p~~r~~~~~~~~~~~~~lyv~GG~~~~~~~~~~~~~~~~~~~~~yd~--w~~~~~~p~~r~~  104 (265)
                      +..+|..+.+......  .....-..+++.++++.+|+.++.              -..+..+|+  -.....++.... 
T Consensus       193 v~~~d~~~~~~~~~~~--~~~~~~~~~~~~~~~~~l~~~~~~--------------~~~i~~~d~~~~~~~~~~~~~~~-  255 (433)
T 3bws_A          193 VHVFDLKTLAYKATVD--LTGKWSKILLYDPIRDLVYCSNWI--------------SEDISVIDRKTKLEIRKTDKIGL-  255 (433)
T ss_dssp             EEEEETTTCCEEEEEE--CSSSSEEEEEEETTTTEEEEEETT--------------TTEEEEEETTTTEEEEECCCCSE-
T ss_pred             EEEEECCCceEEEEEc--CCCCCeeEEEEcCCCCEEEEEecC--------------CCcEEEEECCCCcEEEEecCCCC-
Confidence            4556655544322111  112223345566677788887651              246778887  111111111112 


Q ss_pred             cceEEEecCCCEEEEEcCcccCCCccccccCCceeEEEcCCCcEEEEecCCCCCCCcCceEEEE--CCEEEEEcCccCCC
Q psy14331        105 HQMVALSADKGQLWMFGGEFSSASESQFHHYKDLWVFRMGEKKWEKIVCKDTPPSRSGHRMIAL--KKHLVVFGGFHDNL  182 (265)
Q Consensus       105 ~~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~~~yd~~~~~W~~~~~~~~p~~~~~~~~~~~--~~~iyv~GG~~~~~  182 (265)
                      ...+.+...++.|++. +.......   ..-..+..||+.+++-.......  .  ....++..  ++.+|+.++.    
T Consensus       256 ~~~~~~~~~g~~l~~~-~~~~~~~~---~~dg~i~~~d~~~~~~~~~~~~~--~--~~~~~~~~~~g~~l~~~~~~----  323 (433)
T 3bws_A          256 PRGLLLSKDGKELYIA-QFSASNQE---SGGGRLGIYSMDKEKLIDTIGPP--G--NKRHIVSGNTENKIYVSDMC----  323 (433)
T ss_dssp             EEEEEECTTSSEEEEE-EEESCTTC---SCCEEEEEEETTTTEEEEEEEEE--E--CEEEEEECSSTTEEEEEETT----
T ss_pred             ceEEEEcCCCCEEEEE-ECCCCccc---cCCCeEEEEECCCCcEEeeccCC--C--CcceEEECCCCCEEEEEecC----
Confidence            2233333333345544 43221100   00246889999887543332111  1  11122222  3467777654    


Q ss_pred             CccccCCceEEEEcCCCceE
Q psy14331        183 REAKYYNDVHIFDLETYAWK  202 (265)
Q Consensus       183 ~~~~~~~~v~~y~~~~~~W~  202 (265)
                           -..+..||+.+.+-.
T Consensus       324 -----~~~v~v~d~~~~~~~  338 (433)
T 3bws_A          324 -----CSKIEVYDLKEKKVQ  338 (433)
T ss_dssp             -----TTEEEEEETTTTEEE
T ss_pred             -----CCEEEEEECCCCcEE
Confidence                 246889999876543

>1ri6_A Putative isomerase YBHE; 7-bladed propeller, enzyme, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 2.00A {Escherichia coli} SCOP: b.69.11.1

Probab=93.28  E-value=2.4  Score=33.40  Aligned_cols=74  Identities=12%  Similarity=0.168  Sum_probs=36.8

Q ss_pred             EecCCCEEEEEcCcccCCCccccccCCceeEEEcCC-CcEEEEe--cCCCCCCCcCceEEEE-C-CEEEEEcCccCCCCc
Q psy14331        110 LSADKGQLWMFGGEFSSASESQFHHYKDLWVFRMGE-KKWEKIV--CKDTPPSRSGHRMIAL-K-KHLVVFGGFHDNLRE  184 (265)
Q Consensus       110 ~~~~~~~iyv~GG~~~~~~~~~~~~~~~~~~yd~~~-~~W~~~~--~~~~p~~~~~~~~~~~-~-~~iyv~GG~~~~~~~  184 (265)
                      +...++.||+.+..           -..+.+||+.+ ++...+.  ....+....-..++.. + +.+|+.+..      
T Consensus       136 ~s~dg~~l~~~~~~-----------~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pdg~~l~~~~~~------  198 (343)
T 1ri6_A          136 ISPDNRTLWVPALK-----------QDRICLFTVSDDGHLVAQDPAEVTTVEGAGPRHMVFHPNEQYAYCVNEL------  198 (343)
T ss_dssp             ECTTSSEEEEEEGG-----------GTEEEEEEECTTSCEEEEEEEEEECSTTCCEEEEEECTTSSEEEEEETT------
T ss_pred             ECCCCCEEEEecCC-----------CCEEEEEEecCCCceeeecccccccCCCCCcceEEECCCCCEEEEEeCC------
Confidence            33334567776532           24588999887 6665433  1111111111122222 3 357776532      


Q ss_pred             cccCCceEEEEcC--CCceEE
Q psy14331        185 AKYYNDVHIFDLE--TYAWKK  203 (265)
Q Consensus       185 ~~~~~~v~~y~~~--~~~W~~  203 (265)
                         .+.+..|++.  +.+++.
T Consensus       199 ---~~~i~~~~~~~~~g~~~~  216 (343)
T 1ri6_A          199 ---NSSVDVWELKDPHGNIEC  216 (343)
T ss_dssp             ---TTEEEEEESSCTTSCCEE
T ss_pred             ---CCEEEEEEecCCCCcEEE
Confidence               2467888884  455543

>1gxr_A ESG1, transducin-like enhancer protein 1; transcriptional CO-repressor, WD40, transcription repressor, WD repeat; 1.65A {Homo sapiens} SCOP: b.69.4.1 PDB: 2ce8_A 2ce9_A

Probab=93.27  E-value=2.4  Score=33.29  Aligned_cols=92  Identities=11%  Similarity=0.038  Sum_probs=47.4

Q ss_pred             CCEEEEEcCcccCCCccccccCCceeEEEcCCCcEEEEecCCCCCCCcCceEEEE-CCEEEEEcCccCCCCccccCCceE
Q psy14331        114 KGQLWMFGGEFSSASESQFHHYKDLWVFRMGEKKWEKIVCKDTPPSRSGHRMIAL-KKHLVVFGGFHDNLREAKYYNDVH  192 (265)
Q Consensus       114 ~~~iyv~GG~~~~~~~~~~~~~~~~~~yd~~~~~W~~~~~~~~p~~~~~~~~~~~-~~~iyv~GG~~~~~~~~~~~~~v~  192 (265)
                      ++..++.|+.           -..+..||+.+.+-.......  .+  -.+++.. ++..+++|+.+         ..+.
T Consensus       194 ~~~~l~~~~~-----------dg~i~~~d~~~~~~~~~~~~~--~~--v~~~~~s~~~~~l~~~~~~---------~~i~  249 (337)
T 1gxr_A          194 DGTKLWTGGL-----------DNTVRSWDLREGRQLQQHDFT--SQ--IFSLGYCPTGEWLAVGMES---------SNVE  249 (337)
T ss_dssp             TSSEEEEEET-----------TSEEEEEETTTTEEEEEEECS--SC--EEEEEECTTSSEEEEEETT---------SCEE
T ss_pred             CCCEEEEEec-----------CCcEEEEECCCCceEeeecCC--Cc--eEEEEECCCCCEEEEEcCC---------CcEE
Confidence            4556666653           245889998877543332221  11  1122222 55666666542         3588


Q ss_pred             EEEcCCCceEEeccCCCCCCCCCCceEEEeCCCeEEEEcCcc
Q psy14331        193 IFDLETYAWKKIEPLGAGPAPRSGCQMAATPDGKILISGGYS  234 (265)
Q Consensus       193 ~y~~~~~~W~~~~~~~~~p~~~~~~~~~~~~~~~iyi~GG~~  234 (265)
                      .||+.+..-..+...     ...-..+....++++++.|+.+
T Consensus       250 ~~~~~~~~~~~~~~~-----~~~v~~~~~~~~~~~l~~~~~d  286 (337)
T 1gxr_A          250 VLHVNKPDKYQLHLH-----ESCVLSLKFAYCGKWFVSTGKD  286 (337)
T ss_dssp             EEETTSSCEEEECCC-----SSCEEEEEECTTSSEEEEEETT
T ss_pred             EEECCCCCeEEEcCC-----ccceeEEEECCCCCEEEEecCC
Confidence            899887654433321     1112233334456666666654

>3hfq_A Uncharacterized protein LP_2219; Q88V64_lacpl, NESG, LPR118, structural genomics, PSI-2, protein structure initiative; 1.96A {Lactobacillus plantarum}

Probab=93.25  E-value=1.4  Score=35.27  Aligned_cols=145  Identities=9%  Similarity=0.028  Sum_probs=66.2

Q ss_pred             HHHhhcccceEEEeccCCCCCCCceeeEEecCCCEEEEECcEEeCCCceeeCCCcccCceEEEEe----eecCCCCCCCc
Q psy14331         27 IEAEEKRKNKVIEKVVPEPTRRANFSFLAHPDKDQLILFGGEFYDGQKFVFGSPKALDHLILMNL----FVSAPGAPPPR  102 (265)
Q Consensus        27 ~~~~d~~~~~w~~~~~~~p~~r~~~~~~~~~~~~~lyv~GG~~~~~~~~~~~~~~~~~~~~~yd~----w~~~~~~p~~r  102 (265)
                      ++.+|..+.++..+.. .........+++-+ +++||+.+..   +.         -..++.||+    ...........
T Consensus        20 v~~~d~~tg~~~~~~~-~~~~~~p~~~a~sp-dg~l~~~~~~---~~---------~~~v~~~~~~~g~~~~~~~~~~~~   85 (347)
T 3hfq_A           20 QGTLDTTAKTLTNDGL-LAATQNPTYLALSA-KDCLYSVDKE---DD---------EGGIAAWQIDGQTAHKLNTVVAPG   85 (347)
T ss_dssp             EEEEETTTTEEEEEEE-EEECSCCCCEEECT-TCEEEEEEEE---TT---------EEEEEEEEEETTEEEEEEEEEEES
T ss_pred             EEEEcCCCCeEEEeee-eeccCCcceEEEcc-CCeEEEEEec---CC---------CceEEEEEecCCcEEEeeeeecCC
Confidence            5667777777655211 11112223344444 4457776541   11         246777777    22221111111


Q ss_pred             cccceEEEecCCCEEEEEcCcccCCCccccccCCceeEEEcC-CCcEEEEecCC----CCCCCc----CceEEEE-CCEE
Q psy14331        103 CSHQMVALSADKGQLWMFGGEFSSASESQFHHYKDLWVFRMG-EKKWEKIVCKD----TPPSRS----GHRMIAL-KKHL  172 (265)
Q Consensus       103 ~~~~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~~~yd~~-~~~W~~~~~~~----~p~~~~----~~~~~~~-~~~i  172 (265)
                      .....+.+...++.||+.+..           ...+..|++. ++..+.+....    .|.+|.    .+.++.. ++++
T Consensus        86 ~~p~~~a~spdg~~l~~~~~~-----------~~~v~v~~~~~~g~~~~~~~~~~~~~~p~~~~~~~~~~~~~~spdg~l  154 (347)
T 3hfq_A           86 TPPAYVAVDEARQLVYSANYH-----------KGTAEVMKIAADGALTLTDTVQHSGHGPRPEQDGSHIHYTDLTPDNRL  154 (347)
T ss_dssp             CCCSEEEEETTTTEEEEEETT-----------TTEEEEEEECTTSCEEEEEEEECCCCCSSTTCSSCCEEEEEECTTSCE
T ss_pred             CCCEEEEECCCCCEEEEEeCC-----------CCEEEEEEeCCCCCeeecceeecCCCCCCccccCCCceEEEECCCCcE
Confidence            122233444445567776532           2456777774 33444332211    121111    1223322 5567


Q ss_pred             EEEcCccCCCCccccCCceEEEEcC-CCceEEec
Q psy14331        173 VVFGGFHDNLREAKYYNDVHIFDLE-TYAWKKIE  205 (265)
Q Consensus       173 yv~GG~~~~~~~~~~~~~v~~y~~~-~~~W~~~~  205 (265)
                      |+.+..         .+.+..|++. +.+...+.
T Consensus       155 ~v~~~~---------~~~v~~~~~~~~g~~~~~~  179 (347)
T 3hfq_A          155 AVIDLG---------SDKVYVYNVSDAGQLSEQS  179 (347)
T ss_dssp             EEEETT---------TTEEEEEEECTTSCEEEEE
T ss_pred             EEEeCC---------CCEEEEEEECCCCcEEEee
Confidence            765432         2468889888 55555443

>1qhu_A Protein (hemopexin); beta propeller, HAEM binding and transport, iron metabolism, binding protein; HET: HEM; 2.30A {Oryctolagus cuniculus} SCOP: b.66.1.1 b.66.1.1 PDB: 1qjs_A*

Probab=93.24  E-value=0.72  Score=39.29  Aligned_cols=60  Identities=15%  Similarity=0.401  Sum_probs=34.4

Q ss_pred             CCCEEEEEcCcccCCCccccccCCceeEEEcCCCcEEEEecC----CCCCCCcCceEEEECCEEEEEcCccCCCCccccC
Q psy14331        113 DKGQLWMFGGEFSSASESQFHHYKDLWVFRMGEKKWEKIVCK----DTPPSRSGHRMIALKKHLVVFGGFHDNLREAKYY  188 (265)
Q Consensus       113 ~~~~iyv~GG~~~~~~~~~~~~~~~~~~yd~~~~~W~~~~~~----~~p~~~~~~~~~~~~~~iyv~GG~~~~~~~~~~~  188 (265)
                      .++++|++-|.             ..|++|...+.+......    .+|..  --++...++++|+|=|           
T Consensus       268 ~~G~tYFFKg~-------------~yWR~~~~~~~~~p~~Is~~WpglP~~--IDAAf~~~~~~yfFkG-----------  321 (460)
T 1qhu_A          268 NHGATYVFSGS-------------HYWRLDTNRDGWHSWPIAHQWPQGPST--VDAAFSWEDKLYLIQD-----------  321 (460)
T ss_dssp             TTCCEEEEETT-------------EEEECTTGGGCCCCEEGGGTCTTSCSS--CSEEEEETTEEEEEET-----------
T ss_pred             CCCeEEEEeCC-------------EEEEEecCCCCcCccchhhhccCCCCC--CcEEEEECCeEEEEeC-----------
Confidence            37899998774             255565543332222111    13333  2355566889999976           


Q ss_pred             CceEEEEcCC
Q psy14331        189 NDVHIFDLET  198 (265)
Q Consensus       189 ~~v~~y~~~~  198 (265)
                      +.+|+|+..+
T Consensus       322 ~~yw~f~~~~  331 (460)
T 1qhu_A          322 TKVYVFLTKG  331 (460)
T ss_dssp             TEEEEEECSB
T ss_pred             CEEEEEeCCC
Confidence            3578887653

>3hfq_A Uncharacterized protein LP_2219; Q88V64_lacpl, NESG, LPR118, structural genomics, PSI-2, protein structure initiative; 1.96A {Lactobacillus plantarum}

Probab=92.90  E-value=3  Score=33.31  Aligned_cols=41  Identities=5%  Similarity=-0.124  Sum_probs=21.7

Q ss_pred             HHHHhhcccceEEEeccCCCCCCCceeeEEecCCCEEEEEC
Q psy14331         26 DIEAEEKRKNKVIEKVVPEPTRRANFSFLAHPDKDQLILFG   66 (265)
Q Consensus        26 ~~~~~d~~~~~w~~~~~~~p~~r~~~~~~~~~~~~~lyv~G   66 (265)
                      .++.||....++..+............+++.++++.||+.+
T Consensus        64 ~v~~~~~~~g~~~~~~~~~~~~~~p~~~a~spdg~~l~~~~  104 (347)
T 3hfq_A           64 GIAAWQIDGQTAHKLNTVVAPGTPPAYVAVDEARQLVYSAN  104 (347)
T ss_dssp             EEEEEEEETTEEEEEEEEEEESCCCSEEEEETTTTEEEEEE
T ss_pred             eEEEEEecCCcEEEeeeeecCCCCCEEEEECCCCCEEEEEe
Confidence            36667776666544222111122233455666777788876

>1qks_A Cytochrome CD1 nitrite reductase; enzyme, oxidoreductase, denitrification, electron transport, periplasmic; HET: HEC DHE; 1.28A {Paracoccus pantotrophus} SCOP: a.3.1.2 b.70.2.1 PDB: 1aof_A* 1aoq_A* 1aom_A* 1e2r_A* 1hj5_A* 1h9x_A* 1h9y_A* 1hcm_A* 1hj3_A* 1hj4_A* 1dy7_A* 1gq1_A*

Probab=92.90  E-value=1.3  Score=38.88  Aligned_cols=93  Identities=8%  Similarity=-0.091  Sum_probs=51.0

Q ss_pred             HHHHhhcccceEEEeccCCCCCCCceeeEEecCCCEEEEECcEEeCCCceeeCCCcccCceEEEEee-ec---CCCCCCC
Q psy14331         26 DIEAEEKRKNKVIEKVVPEPTRRANFSFLAHPDKDQLILFGGEFYDGQKFVFGSPKALDHLILMNLF-VS---APGAPPP  101 (265)
Q Consensus        26 ~~~~~d~~~~~w~~~~~~~p~~r~~~~~~~~~~~~~lyv~GG~~~~~~~~~~~~~~~~~~~~~yd~w-~~---~~~~p~~  101 (265)
                      .+..+|..+.+-...   .+....-|.+++.++++.+|+.+.               ...+..+|+| .+   ...++..
T Consensus       178 ~V~viD~~t~~v~~~---i~~g~~p~~v~~SpDGr~lyv~~~---------------dg~V~viD~~~~t~~~v~~i~~G  239 (567)
T 1qks_A          178 QIALIDGSTYEIKTV---LDTGYAVHISRLSASGRYLFVIGR---------------DGKVNMIDLWMKEPTTVAEIKIG  239 (567)
T ss_dssp             EEEEEETTTCCEEEE---EECSSCEEEEEECTTSCEEEEEET---------------TSEEEEEETTSSSCCEEEEEECC
T ss_pred             eEEEEECCCCeEEEE---EeCCCCccceEECCCCCEEEEEcC---------------CCeEEEEECCCCCCcEeEEEecC
Confidence            366677777665331   233334466777778889998653               3567788874 11   1112222


Q ss_pred             ccccceEEEe----cCCCEEEEEcCcccCCCccccccCCceeEEEcCCCcE
Q psy14331        102 RCSHQMVALS----ADKGQLWMFGGEFSSASESQFHHYKDLWVFRMGEKKW  148 (265)
Q Consensus       102 r~~~~~~~~~----~~~~~iyv~GG~~~~~~~~~~~~~~~~~~yd~~~~~W  148 (265)
                      ...+ .+.+.    ..++.+|+..-.           .+.+.++|..+.+=
T Consensus       240 ~~P~-~ia~s~~~~pDGk~l~v~n~~-----------~~~v~ViD~~t~~~  278 (567)
T 1qks_A          240 SEAR-SIETSKMEGWEDKYAIAGAYW-----------PPQYVIMDGETLEP  278 (567)
T ss_dssp             SEEE-EEEECCSTTCTTTEEEEEEEE-----------TTEEEEEETTTCCE
T ss_pred             CCCc-eeEEccccCCCCCEEEEEEcc-----------CCeEEEEECCCCcE
Confidence            2222 22333    235567776432           35677889777653

>3no2_A Uncharacterized protein; six-bladed beta-propeller, structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE CIT PEG; 1.35A {Bacteroides caccae}

Probab=92.71  E-value=2.9  Score=32.69  Aligned_cols=79  Identities=10%  Similarity=-0.017  Sum_probs=45.5

Q ss_pred             CceeEEEcCCC-cEEEEecCCCCCCCcCceEEEE-CCEEEEEcCccCCCCccccCCceEEEEcCCC--ceEEeccCCCCC
Q psy14331        136 KDLWVFRMGEK-KWEKIVCKDTPPSRSGHRMIAL-KKHLVVFGGFHDNLREAKYYNDVHIFDLETY--AWKKIEPLGAGP  211 (265)
Q Consensus       136 ~~~~~yd~~~~-~W~~~~~~~~p~~~~~~~~~~~-~~~iyv~GG~~~~~~~~~~~~~v~~y~~~~~--~W~~~~~~~~~p  211 (265)
                      ..+.+||++.+ .|+.-...      ..+++... ++.+++.+..         ...|..+|+.+.  .|+.-...  .+
T Consensus       146 ~~v~~~d~~G~~~w~~~~~~------~~~~~~~~~~g~~~v~~~~---------~~~v~~~d~~tG~~~w~~~~~~--~~  208 (276)
T 3no2_A          146 SEVREIAPNGQLLNSVKLSG------TPFSSAFLDNGDCLVACGD---------AHCFVQLNLESNRIVRRVNAND--IE  208 (276)
T ss_dssp             TEEEEECTTSCEEEEEECSS------CCCEEEECTTSCEEEECBT---------TSEEEEECTTTCCEEEEEEGGG--SB
T ss_pred             CEEEEECCCCCEEEEEECCC------CccceeEcCCCCEEEEeCC---------CCeEEEEeCcCCcEEEEecCCC--CC
Confidence            56889998733 36543321      11234444 6777777653         235899999964  47765432  12


Q ss_pred             CCCC--CceEEEeCCCeEEEEc
Q psy14331        212 APRS--GCQMAATPDGKILISG  231 (265)
Q Consensus       212 ~~~~--~~~~~~~~~~~iyi~G  231 (265)
                      ..+.  -.++....++.+||..
T Consensus       209 ~~~l~~~~~~~~~~~G~i~v~~  230 (276)
T 3no2_A          209 GVQLFFVAQLFPLQNGGLYICN  230 (276)
T ss_dssp             SCCCSEEEEEEECTTSCEEEEE
T ss_pred             CccccccccceEcCCCCEEEEe
Confidence            1122  2344556688999886

>3scy_A Hypothetical bacterial 6-phosphogluconolactonase; 7-bladed beta-propeller, structural genomics, joint center F structural genomics, JCSG; HET: MSE; 1.50A {Bacteroides fragilis} PDB: 3fgb_A

Probab=92.69  E-value=3.3  Score=33.30  Aligned_cols=81  Identities=15%  Similarity=0.166  Sum_probs=41.1

Q ss_pred             EEEecCCCEEEEEcCcccCCCccccccCCceeEEEcCCCcEEEEecCC-CCCCCcCceEEEE--CC-EEEEEcCccCCCC
Q psy14331        108 VALSADKGQLWMFGGEFSSASESQFHHYKDLWVFRMGEKKWEKIVCKD-TPPSRSGHRMIAL--KK-HLVVFGGFHDNLR  183 (265)
Q Consensus       108 ~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~~~yd~~~~~W~~~~~~~-~p~~~~~~~~~~~--~~-~iyv~GG~~~~~~  183 (265)
                      +.+...++.||+.+..           .+.+.+||..+++...+.... .+..........+  ++ .+|+.... .   
T Consensus       216 ~~~spdg~~l~v~~~~-----------~~~v~v~~~~~g~~~~~~~~~~~~~~~~~~~~i~~spdg~~l~v~~~~-~---  280 (361)
T 3scy_A          216 LIFNSDGKFAYLINEI-----------GGTVIAFRYADGMLDEIQTVAADTVNAQGSGDIHLSPDGKYLYASNRL-K---  280 (361)
T ss_dssp             EEECTTSSEEEEEETT-----------TCEEEEEEEETTEEEEEEEEESCSSCCCCEEEEEECTTSSEEEEEECS-S---
T ss_pred             EEEcCCCCEEEEEcCC-----------CCeEEEEEecCCceEEeEEEecCCCCCCCcccEEECCCCCEEEEECCC-C---
Confidence            3444444567776532           355888888877775554322 1221122223333  34 56654321 0   


Q ss_pred             ccccCCceEEEEc--CCCceEEeccC
Q psy14331        184 EAKYYNDVHIFDL--ETYAWKKIEPL  207 (265)
Q Consensus       184 ~~~~~~~v~~y~~--~~~~W~~~~~~  207 (265)
                          .+.+..|++  .+.+++.+...
T Consensus       281 ----~~~i~v~~~~~~~g~~~~~~~~  302 (361)
T 3scy_A          281 ----ADGVAIFKVDETNGTLTKVGYQ  302 (361)
T ss_dssp             ----SCEEEEEEECTTTCCEEEEEEE
T ss_pred             ----CCEEEEEEEcCCCCcEEEeeEe
Confidence                134666665  46777766653

>3u4y_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomi CS, MCSG; 2.99A {Desulfotomaculum acetoxidans}

Probab=92.69  E-value=3  Score=32.88  Aligned_cols=137  Identities=9%  Similarity=0.042  Sum_probs=70.8

Q ss_pred             HHHhhcccceEEEeccCCCCCCCceeeEEecCCCEEEEECcEEeCCCceeeCCCcccCc-eEEEEe-------eecCCCC
Q psy14331         27 IEAEEKRKNKVIEKVVPEPTRRANFSFLAHPDKDQLILFGGEFYDGQKFVFGSPKALDH-LILMNL-------FVSAPGA   98 (265)
Q Consensus        27 ~~~~d~~~~~w~~~~~~~p~~r~~~~~~~~~~~~~lyv~GG~~~~~~~~~~~~~~~~~~-~~~yd~-------w~~~~~~   98 (265)
                      +..+|..+.+......   .....+.+++.|+++.+|+.+..              .+. +..|++       .......
T Consensus       110 i~v~d~~~~~~~~~~~---~~~~~~~~~~spdg~~l~~~~~~--------------~~~~i~~~~~~~~g~~~~~~~~~~  172 (331)
T 3u4y_A          110 MQSYSFLKNKFISTIP---IPYDAVGIAISPNGNGLILIDRS--------------SANTVRRFKIDADGVLFDTGQEFI  172 (331)
T ss_dssp             EEEEETTTTEEEEEEE---CCTTEEEEEECTTSSCEEEEEET--------------TTTEEEEEEECTTCCEEEEEEEEE
T ss_pred             EEEEECCCCCeEEEEE---CCCCccceEECCCCCEEEEEecC--------------CCceEEEEEECCCCcEeecCCccc
Confidence            5667777666544222   22233567777677778887551              234 565664       1100111


Q ss_pred             CCCccccceEEEecCCCEEEEEcCcccCCCccccccCCceeEEEcCCCcE----EEEecCCCCCCCcCceEEEE-CC-EE
Q psy14331         99 PPPRCSHQMVALSADKGQLWMFGGEFSSASESQFHHYKDLWVFRMGEKKW----EKIVCKDTPPSRSGHRMIAL-KK-HL  172 (265)
Q Consensus        99 p~~r~~~~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~~~yd~~~~~W----~~~~~~~~p~~~~~~~~~~~-~~-~i  172 (265)
                      +.... ...+.+...++.+|+.+..           .+.+.+||+.+.+.    ..++..     .....++.. ++ .+
T Consensus       173 ~~~~~-~~~~~~spdg~~l~v~~~~-----------~~~v~v~d~~~~~~~~~~~~~~~~-----~~~~~~~~spdg~~l  235 (331)
T 3u4y_A          173 SGGTR-PFNITFTPDGNFAFVANLI-----------GNSIGILETQNPENITLLNAVGTN-----NLPGTIVVSRDGSTV  235 (331)
T ss_dssp             CSSSS-EEEEEECTTSSEEEEEETT-----------TTEEEEEECSSTTSCEEEEEEECS-----SCCCCEEECTTSSEE
T ss_pred             cCCCC-ccceEECCCCCEEEEEeCC-----------CCeEEEEECCCCcccceeeeccCC-----CCCceEEECCCCCEE
Confidence            11111 2233444444567777543           35688999987764    223211     111223332 34 57


Q ss_pred             EEEcCccCCCCccccCCceEEEEcCCCceEEecc
Q psy14331        173 VVFGGFHDNLREAKYYNDVHIFDLETYAWKKIEP  206 (265)
Q Consensus       173 yv~GG~~~~~~~~~~~~~v~~y~~~~~~W~~~~~  206 (265)
                      |+....         .+.+..+|+.+.+.+.+..
T Consensus       236 ~v~~~~---------~~~i~~~d~~~~~~~~~~~  260 (331)
T 3u4y_A          236 YVLTES---------TVDVFNFNQLSGTLSFVKS  260 (331)
T ss_dssp             EEECSS---------EEEEEEEETTTTEEEEEEE
T ss_pred             EEEEcC---------CCEEEEEECCCCceeeecc
Confidence            765442         2458889999887755543

>3jrp_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum; 2.60A {Saccharomyces cerevisiae}

Probab=92.61  E-value=2.6  Score=33.75  Aligned_cols=64  Identities=8%  Similarity=0.077  Sum_probs=34.6

Q ss_pred             CCEEEEEcCcccCCCccccccCCceeEEEcCCC--cEEEEecCCCCCCCcCceEEEE--C---CEEEEEcCccCCCCccc
Q psy14331        114 KGQLWMFGGEFSSASESQFHHYKDLWVFRMGEK--KWEKIVCKDTPPSRSGHRMIAL--K---KHLVVFGGFHDNLREAK  186 (265)
Q Consensus       114 ~~~iyv~GG~~~~~~~~~~~~~~~~~~yd~~~~--~W~~~~~~~~p~~~~~~~~~~~--~---~~iyv~GG~~~~~~~~~  186 (265)
                      ++.+++.|+.+           ..+..||..++  .+..+....  ...........  +   +.+++.|+.++      
T Consensus       171 ~~~~l~~~~~d-----------g~i~i~d~~~~~~~~~~~~~~~--~h~~~v~~~~~sp~~~~~~~l~s~~~dg------  231 (379)
T 3jrp_A          171 ESRKFVTGGAD-----------NLVKIWKYNSDAQTYVLESTLE--GHSDWVRDVAWSPTVLLRSYLASVSQDR------  231 (379)
T ss_dssp             TTCEEEEEETT-----------SCEEEEEEETTTTEEEEEEEEC--CCSSCEEEEEECCCCSSSEEEEEEETTS------
T ss_pred             CCCEEEEEeCC-----------CeEEEEEecCCCcceeeEEEEe--cccCcEeEEEECCCCCCCCeEEEEeCCC------
Confidence            36677777642           34777777554  355544332  11111122222  4   67888877543      


Q ss_pred             cCCceEEEEcCCC
Q psy14331        187 YYNDVHIFDLETY  199 (265)
Q Consensus       187 ~~~~v~~y~~~~~  199 (265)
                         .+..||+.+.
T Consensus       232 ---~i~iwd~~~~  241 (379)
T 3jrp_A          232 ---TCIIWTQDNE  241 (379)
T ss_dssp             ---CEEEEEESST
T ss_pred             ---EEEEEeCCCC
Confidence               4777887765

>1pex_A Collagenase-3, MMP-13; C-terminal hemopexin-like domain of matrix- metalloproteinase, metalloprotease; 2.70A {Homo sapiens} SCOP: b.66.1.1

Probab=92.59  E-value=2.5  Score=31.71  Aligned_cols=94  Identities=18%  Similarity=0.244  Sum_probs=48.1

Q ss_pred             CCEEEEEcCcccCCCccccccCCceeEEEcCCCcE---EEEecCCCCCCC-cCceEEEE--CCEEEEEcCccCCCCcccc
Q psy14331        114 KGQLWMFGGEFSSASESQFHHYKDLWVFRMGEKKW---EKIVCKDTPPSR-SGHRMIAL--KKHLVVFGGFHDNLREAKY  187 (265)
Q Consensus       114 ~~~iyv~GG~~~~~~~~~~~~~~~~~~yd~~~~~W---~~~~~~~~p~~~-~~~~~~~~--~~~iyv~GG~~~~~~~~~~  187 (265)
                      ++++|++-|.             .+|+|+-.+-.-   +.+...+.|... .--++...  ++++|+|-|          
T Consensus        79 ~~~iyfFkG~-------------~~w~~~~~~~~~gyPk~I~~~GlP~~~~~IDAA~~~~~~gk~yfFkG----------  135 (207)
T 1pex_A           79 HDLIFIFRGR-------------KFWALNGYDILEGYPKKISELGLPKEVKKISAAVHFEDTGKTLLFSG----------  135 (207)
T ss_dssp             TTEEEEEETT-------------EEEEESTTCCCTTCSEESTTTTCCTTCCCCCEEEECTTTSEEEEEET----------
T ss_pred             CCcEEEEccC-------------EEEEEeCCeeccCCceeccccCCCCCCccccEEEEeCCCCEEEEEeC----------
Confidence            6899999773             366665321110   122222333211 11233333  479999987          


Q ss_pred             CCceEEEEcCCCceEE-----ec-cCCCCCCCCCCceEEEeCCCeEEEEcCcc
Q psy14331        188 YNDVHIFDLETYAWKK-----IE-PLGAGPAPRSGCQMAATPDGKILISGGYS  234 (265)
Q Consensus       188 ~~~v~~y~~~~~~W~~-----~~-~~~~~p~~~~~~~~~~~~~~~iyi~GG~~  234 (265)
                       +..|+||..+++-+.     +. .-+.+|. .. .++... ++++|.|-|..
T Consensus       136 -~~ywr~d~~~~~~d~gyPr~i~~~~~Gip~-~i-DaAf~~-~g~~YfFkg~~  184 (207)
T 1pex_A          136 -NQVWRYDDTNHIMDKDYPRLIEEDFPGIGD-KV-DAVYEK-NGYIYFFNGPI  184 (207)
T ss_dssp             -TEEEEEETTTTEECSSCCCBHHHHSTTSCS-CC-SEEEEE-TTEEEEEETTE
T ss_pred             -CEEEEEeCcCccccCCCCccHHHcCCCCCC-Cc-cEEEEc-CCcEEEEECCE
Confidence             468999987653221     11 1111232 22 333333 88999997653

>2ojh_A Uncharacterized protein ATU1656/AGR_C_3050; TOLB, 6-stranded beta-propeller, structural genomics, PSI-2; 1.85A {Agrobacterium tumefaciens str}

Probab=92.57  E-value=2.7  Score=32.09  Aligned_cols=148  Identities=7%  Similarity=-0.090  Sum_probs=66.8

Q ss_pred             HHHHhhccc-ceEEEeccCCCCCCCceeeEEecCCCEEEEECcEEeCCCceeeCCCcccCceEEEEe-eecCCCCCCCcc
Q psy14331         26 DIEAEEKRK-NKVIEKVVPEPTRRANFSFLAHPDKDQLILFGGEFYDGQKFVFGSPKALDHLILMNL-FVSAPGAPPPRC  103 (265)
Q Consensus        26 ~~~~~d~~~-~~w~~~~~~~p~~r~~~~~~~~~~~~~lyv~GG~~~~~~~~~~~~~~~~~~~~~yd~-w~~~~~~p~~r~  103 (265)
                      .++.+|..+ .+... ....+....-..+...+++..|++.+.   ....        ...+|.++. -.....+.....
T Consensus        63 ~i~~~d~~~~~~~~~-~~~~~~~~~~~~~~~spdg~~l~~~~~---~~~~--------~~~l~~~~~~~~~~~~~~~~~~  130 (297)
T 2ojh_A           63 LLYRLSLAGDPSPEK-VDTGFATICNNDHGISPDGALYAISDK---VEFG--------KSAIYLLPSTGGTPRLMTKNLP  130 (297)
T ss_dssp             EEEEEESSSCCSCEE-CCCTTCCCBCSCCEECTTSSEEEEEEC---TTTS--------SCEEEEEETTCCCCEECCSSSS
T ss_pred             eEEEEeCCCCCCceE-eccccccccccceEECCCCCEEEEEEe---CCCC--------cceEEEEECCCCceEEeecCCC
Confidence            356667666 55544 222221122233445545555555432   1111        467888876 111111111111


Q ss_pred             ccceEEEecCCCEEEEEcCcccCCCccccccCCceeEEEcCCCcEEEEecCCCCCCCcCceEEEE-CCE-EEEEcCccCC
Q psy14331        104 SHQMVALSADKGQLWMFGGEFSSASESQFHHYKDLWVFRMGEKKWEKIVCKDTPPSRSGHRMIAL-KKH-LVVFGGFHDN  181 (265)
Q Consensus       104 ~~~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~~~yd~~~~~W~~~~~~~~p~~~~~~~~~~~-~~~-iyv~GG~~~~  181 (265)
                       ...+.+...+..|++.++...         .-.++.++..+.....+....   ... ..+... ++. +++.+..+. 
T Consensus       131 -~~~~~~spdg~~l~~~~~~~~---------~~~l~~~~~~~~~~~~~~~~~---~~~-~~~~~s~dg~~l~~~~~~~~-  195 (297)
T 2ojh_A          131 -SYWHGWSPDGKSFTYCGIRDQ---------VFDIYSMDIDSGVETRLTHGE---GRN-DGPDYSPDGRWIYFNSSRTG-  195 (297)
T ss_dssp             -EEEEEECTTSSEEEEEEEETT---------EEEEEEEETTTCCEEECCCSS---SCE-EEEEECTTSSEEEEEECTTS-
T ss_pred             -ccceEECCCCCEEEEEECCCC---------ceEEEEEECCCCcceEcccCC---Ccc-ccceECCCCCEEEEEecCCC-
Confidence             122233333445555554321         235788888777765543221   111 122222 444 444443222 


Q ss_pred             CCccccCCceEEEEcCCCceEEecc
Q psy14331        182 LREAKYYNDVHIFDLETYAWKKIEP  206 (265)
Q Consensus       182 ~~~~~~~~~v~~y~~~~~~W~~~~~  206 (265)
                            ...+|.+++.......+..
T Consensus       196 ------~~~i~~~~~~~~~~~~~~~  214 (297)
T 2ojh_A          196 ------QMQIWRVRVDGSSVERITD  214 (297)
T ss_dssp             ------SCEEEEEETTSSCEEECCC
T ss_pred             ------CccEEEECCCCCCcEEEec
Confidence                  3568888877777666544

>3jrp_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum; 2.60A {Saccharomyces cerevisiae}

Probab=92.15  E-value=2.2  Score=34.16  Aligned_cols=55  Identities=18%  Similarity=0.150  Sum_probs=28.2

Q ss_pred             CEEEEEcCccCCCCccccCCceEEEEcCCC--ceEEeccCCCCCCCCCCceEEEeCC---CeEEEEcCccc
Q psy14331        170 KHLVVFGGFHDNLREAKYYNDVHIFDLETY--AWKKIEPLGAGPAPRSGCQMAATPD---GKILISGGYSK  235 (265)
Q Consensus       170 ~~iyv~GG~~~~~~~~~~~~~v~~y~~~~~--~W~~~~~~~~~p~~~~~~~~~~~~~---~~iyi~GG~~~  235 (265)
                      +.+++.|+.++         .|..||+.+.  .+..+....  .....-..++...+   +.+++.|+.+.
T Consensus       172 ~~~l~~~~~dg---------~i~i~d~~~~~~~~~~~~~~~--~h~~~v~~~~~sp~~~~~~~l~s~~~dg  231 (379)
T 3jrp_A          172 SRKFVTGGADN---------LVKIWKYNSDAQTYVLESTLE--GHSDWVRDVAWSPTVLLRSYLASVSQDR  231 (379)
T ss_dssp             TCEEEEEETTS---------CEEEEEEETTTTEEEEEEEEC--CCSSCEEEEEECCCCSSSEEEEEEETTS
T ss_pred             CCEEEEEeCCC---------eEEEEEecCCCcceeeEEEEe--cccCcEeEEEECCCCCCCCeEEEEeCCC
Confidence            56777776533         4777777654  355544421  11111223333334   57777776553

>3fm0_A Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD repeat, biosynthetic prote structural genomics, structural genomics consortium; 1.70A {Homo sapiens}

Probab=92.12  E-value=3.7  Score=32.92  Aligned_cols=97  Identities=18%  Similarity=0.323  Sum_probs=48.7

Q ss_pred             CCEEEEEcCcccCCCccccccCCceeEEEcCCC-cEEEEecCCCCCCCcCceEEEE--CCEEEEEcCccCCCCccccCCc
Q psy14331        114 KGQLWMFGGEFSSASESQFHHYKDLWVFRMGEK-KWEKIVCKDTPPSRSGHRMIAL--KKHLVVFGGFHDNLREAKYYND  190 (265)
Q Consensus       114 ~~~iyv~GG~~~~~~~~~~~~~~~~~~yd~~~~-~W~~~~~~~~p~~~~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~~  190 (265)
                      ++.+++.|+.+           ..+..+|+.+. .+..+....  ........+..  ++.+++.|+.+         ..
T Consensus       116 ~~~~l~s~s~D-----------~~v~iwd~~~~~~~~~~~~~~--~h~~~v~~~~~~p~~~~l~s~s~d---------~~  173 (345)
T 3fm0_A          116 SGNLLATCSRD-----------KSVWVWEVDEEDEYECVSVLN--SHTQDVKHVVWHPSQELLASASYD---------DT  173 (345)
T ss_dssp             TSSEEEEEETT-----------SCEEEEEECTTSCEEEEEEEC--CCCSCEEEEEECSSSSCEEEEETT---------SC
T ss_pred             CCCEEEEEECC-----------CeEEEEECCCCCCeEEEEEec--CcCCCeEEEEECCCCCEEEEEeCC---------Cc
Confidence            56677777643           34777777654 333333221  11111122222  45666667653         34


Q ss_pred             eEEEEcCCCceEEeccCCCCCCCCCCceEEEeCCCeEEEEcCcc
Q psy14331        191 VHIFDLETYAWKKIEPLGAGPAPRSGCQMAATPDGKILISGGYS  234 (265)
Q Consensus       191 v~~y~~~~~~W~~~~~~~~~p~~~~~~~~~~~~~~~iyi~GG~~  234 (265)
                      +..||..+..|..+....  .....-.++....+++.++.|+.+
T Consensus       174 i~~w~~~~~~~~~~~~~~--~h~~~v~~l~~sp~g~~l~s~s~D  215 (345)
T 3fm0_A          174 VKLYREEEDDWVCCATLE--GHESTVWSLAFDPSGQRLASCSDD  215 (345)
T ss_dssp             EEEEEEETTEEEEEEEEC--CCSSCEEEEEECTTSSEEEEEETT
T ss_pred             EEEEEecCCCEEEEEEec--CCCCceEEEEECCCCCEEEEEeCC
Confidence            778888888887555431  111112233333355666666554

>3bws_A Protein LP49; two-domain, immunoglobulin-like, 7-bladed beta propeller, unknown function; 1.99A {Leptospira interrogans}

Probab=91.81  E-value=4.6  Score=33.22  Aligned_cols=68  Identities=21%  Similarity=0.148  Sum_probs=40.1

Q ss_pred             CCEEEEEcCcccCCCccccccCCceeEEEcCCCcEEEEecCC-CCCCCcCceEEEE--CCEEEEEcCccCCCCccccCCc
Q psy14331        114 KGQLWMFGGEFSSASESQFHHYKDLWVFRMGEKKWEKIVCKD-TPPSRSGHRMIAL--KKHLVVFGGFHDNLREAKYYND  190 (265)
Q Consensus       114 ~~~iyv~GG~~~~~~~~~~~~~~~~~~yd~~~~~W~~~~~~~-~p~~~~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~~  190 (265)
                      ++.+++.++..           ..+..+|+.+++........ ..........+..  ++.+++.++.+         ..
T Consensus       133 ~~~~~~~~~~~-----------~~i~~~d~~~g~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~s~~~d---------~~  192 (433)
T 3bws_A          133 NTRLAIPLLED-----------EGMDVLDINSGQTVRLSPPEKYKKKLGFVETISIPEHNELWVSQMQA---------NA  192 (433)
T ss_dssp             SSEEEEEBTTS-----------SSEEEEETTTCCEEEECCCHHHHTTCCEEEEEEEGGGTEEEEEEGGG---------TE
T ss_pred             CCeEEEEeCCC-----------CeEEEEECCCCeEeeecCcccccccCCceeEEEEcCCCEEEEEECCC---------CE
Confidence            67888887642           45889999988765432221 0011111112233  67888877642         46


Q ss_pred             eEEEEcCCCce
Q psy14331        191 VHIFDLETYAW  201 (265)
Q Consensus       191 v~~y~~~~~~W  201 (265)
                      +..||+.+.+-
T Consensus       193 v~~~d~~~~~~  203 (433)
T 3bws_A          193 VHVFDLKTLAY  203 (433)
T ss_dssp             EEEEETTTCCE
T ss_pred             EEEEECCCceE
Confidence            88999887654

>1gxr_A ESG1, transducin-like enhancer protein 1; transcriptional CO-repressor, WD40, transcription repressor, WD repeat; 1.65A {Homo sapiens} SCOP: b.69.4.1 PDB: 2ce8_A 2ce9_A

Probab=91.50  E-value=4.1  Score=31.88  Aligned_cols=96  Identities=13%  Similarity=0.150  Sum_probs=47.0

Q ss_pred             CCEEEEEcCcccCCCccccccCCceeEEEcCCCcEEEEecCCCCCCCcCceEEEE-CCEEEEEcCccCCCCccccCCceE
Q psy14331        114 KGQLWMFGGEFSSASESQFHHYKDLWVFRMGEKKWEKIVCKDTPPSRSGHRMIAL-KKHLVVFGGFHDNLREAKYYNDVH  192 (265)
Q Consensus       114 ~~~iyv~GG~~~~~~~~~~~~~~~~~~yd~~~~~W~~~~~~~~p~~~~~~~~~~~-~~~iyv~GG~~~~~~~~~~~~~v~  192 (265)
                      ++..++.|+.           -..+..||..+.+............. -.+++.. ++..++.|+.+         ..+.
T Consensus       108 ~~~~l~~~~~-----------d~~i~~~d~~~~~~~~~~~~~~~~~~-i~~~~~~~~~~~l~~~~~d---------g~v~  166 (337)
T 1gxr_A          108 DGCTLIVGGE-----------ASTLSIWDLAAPTPRIKAELTSSAPA-CYALAISPDSKVCFSCCSD---------GNIA  166 (337)
T ss_dssp             TSSEEEEEES-----------SSEEEEEECCCC--EEEEEEECSSSC-EEEEEECTTSSEEEEEETT---------SCEE
T ss_pred             CCCEEEEEcC-----------CCcEEEEECCCCCcceeeecccCCCc-eEEEEECCCCCEEEEEeCC---------CcEE
Confidence            4566666653           24588999988875444332211111 1122222 45566666643         3588


Q ss_pred             EEEcCCCceEEeccCCCCCCCCCCceEEEeCCCeEEEEcCcc
Q psy14331        193 IFDLETYAWKKIEPLGAGPAPRSGCQMAATPDGKILISGGYS  234 (265)
Q Consensus       193 ~y~~~~~~W~~~~~~~~~p~~~~~~~~~~~~~~~iyi~GG~~  234 (265)
                      .||+.+.+....-..    ....-..+....+++.++.|+.+
T Consensus       167 ~~d~~~~~~~~~~~~----~~~~i~~~~~~~~~~~l~~~~~d  204 (337)
T 1gxr_A          167 VWDLHNQTLVRQFQG----HTDGASCIDISNDGTKLWTGGLD  204 (337)
T ss_dssp             EEETTTTEEEEEECC----CSSCEEEEEECTTSSEEEEEETT
T ss_pred             EEeCCCCceeeeeec----ccCceEEEEECCCCCEEEEEecC
Confidence            899887654332221    11112233333355666666544

>1k8k_C P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-propeller, structural protein; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1tyq_C* 1u2v_C* 2p9i_C* 2p9k_C* 2p9l_C 2p9n_C* 2p9p_C* 2p9s_C* 2p9u_C* 3rse_C 3dxm_C* 3dxk_C

Probab=91.09  E-value=5  Score=32.03  Aligned_cols=39  Identities=21%  Similarity=0.126  Sum_probs=18.4

Q ss_pred             HHHhhcccceEEEeccCCCCC-CCceeeEEecCCCEEEEECc
Q psy14331         27 IEAEEKRKNKVIEKVVPEPTR-RANFSFLAHPDKDQLILFGG   67 (265)
Q Consensus        27 ~~~~d~~~~~w~~~~~~~p~~-r~~~~~~~~~~~~~lyv~GG   67 (265)
                      +..||..+.++.. ....... ..-.++.+.+ ++.+++.|+
T Consensus        32 v~i~~~~~~~~~~-~~~~~~h~~~v~~~~~~~-~~~~l~~~~   71 (372)
T 1k8k_C           32 VHIYEKSGNKWVQ-VHELKEHNGQVTGVDWAP-DSNRIVTCG   71 (372)
T ss_dssp             EEEEEEETTEEEE-EEEEECCSSCEEEEEEET-TTTEEEEEE
T ss_pred             EEEEeCCCCcEEe-eeeecCCCCcccEEEEeC-CCCEEEEEc
Confidence            6677877776543 2222211 2223344544 444555555

>1gen_A Gelatinase A; hydrolase, hemopexin domain, metalloprotease, hydrolase (metalloprotease); 2.15A {Homo sapiens} SCOP: b.66.1.1 PDB: 1rtg_A

Probab=90.63  E-value=4.3  Score=30.66  Aligned_cols=101  Identities=17%  Similarity=0.387  Sum_probs=56.8

Q ss_pred             cCCCEEEEECcEEeCCCceeeCCCcccCceEEEEeeecCC---------CCCCCc-cccceEEEecCCCEEEEEcCcccC
Q psy14331         57 PDKDQLILFGGEFYDGQKFVFGSPKALDHLILMNLFVSAP---------GAPPPR-CSHQMVALSADKGQLWMFGGEFSS  126 (265)
Q Consensus        57 ~~~~~lyv~GG~~~~~~~~~~~~~~~~~~~~~yd~w~~~~---------~~p~~r-~~~~~~~~~~~~~~iyv~GG~~~~  126 (265)
                      +.++++|+|-|                +..|+||.....+         .+|... .-.++... ..++++|++-|    
T Consensus        85 ~~~~k~yfFkG----------------~~yW~y~~~~~~~gyPk~I~~~g~p~~~~~IDAAf~~-~~~g~~YfFkG----  143 (218)
T 1gen_A           85 PQEEKAVFFAG----------------NEYWIYSASTLERGYPKPLTSLGLPPDVQRVDAAFNW-SKNKKTYIFAG----  143 (218)
T ss_dssp             TTTTEEEEEET----------------TEEEEEETTEECTTCSEEGGGGTCCTTCCCCSEEEEE-TTTTEEEEEET----
T ss_pred             CCCCEEEEEeC----------------CEEEEEcCccccCCCCccHhhcCCCCCcCCccEEEEE-cCCCeEEEEEC----
Confidence            35789999988                5778887511111         223221 12333322 34789999977    


Q ss_pred             CCccccccCCceeEEEcCCCcEEE-----Ee-c-CCCCCCCcCceEEEEC--CEEEEEcCccCCCCccccCCceEEEEcC
Q psy14331        127 ASESQFHHYKDLWVFRMGEKKWEK-----IV-C-KDTPPSRSGHRMIALK--KHLVVFGGFHDNLREAKYYNDVHIFDLE  197 (265)
Q Consensus       127 ~~~~~~~~~~~~~~yd~~~~~W~~-----~~-~-~~~p~~~~~~~~~~~~--~~iyv~GG~~~~~~~~~~~~~v~~y~~~  197 (265)
                               +..|+||..+++-..     +. . ++.|.  .-.++...+  +.+|.|-|           +..|+||..
T Consensus       144 ---------~~ywr~d~~~~~v~~gyPr~i~~~w~g~p~--~idaAf~~~~~g~~YfFkg-----------~~y~~~~~~  201 (218)
T 1gen_A          144 ---------DKFWRYNEVKKKMDPGFPKLIADAWNAIPD--NLDAVVDLQGGGHSYFFKG-----------AYYLKLENQ  201 (218)
T ss_dssp             ---------TEEEEEETTTTEECSSCCEEHHHHSSSCCS--SCSEEEECTTTCEEEEEET-----------TEEEEEETT
T ss_pred             ---------CEEEEEECccccccCCCCcchhhccCCCCC--CCCEEEEEcCCCcEEEEEC-----------CEEEEEECC
Confidence                     358899987653211     11 0 11222  223455544  79999977           457888876


Q ss_pred             CCc
Q psy14331        198 TYA  200 (265)
Q Consensus       198 ~~~  200 (265)
                      +..
T Consensus       202 ~~~  204 (218)
T 1gen_A          202 SLK  204 (218)
T ss_dssp             EEE
T ss_pred             cee
Confidence            554

>1k8k_C P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-propeller, structural protein; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1tyq_C* 1u2v_C* 2p9i_C* 2p9k_C* 2p9l_C 2p9n_C* 2p9p_C* 2p9s_C* 2p9u_C* 3rse_C 3dxm_C* 3dxk_C

Probab=90.20  E-value=6  Score=31.53  Aligned_cols=24  Identities=13%  Similarity=0.075  Sum_probs=15.3

Q ss_pred             CCEEEEEcCccCCCCccccCCceEEEEcCCCce
Q psy14331        169 KKHLVVFGGFHDNLREAKYYNDVHIFDLETYAW  201 (265)
Q Consensus       169 ~~~iyv~GG~~~~~~~~~~~~~v~~y~~~~~~W  201 (265)
                      ++..++.|+.+         ..+..||+.+.+-
T Consensus       213 ~~~~l~~~~~d---------~~i~i~d~~~~~~  236 (372)
T 1k8k_C          213 NGSRVAWVSHD---------STVCLADADKKMA  236 (372)
T ss_dssp             SSSEEEEEETT---------TEEEEEEGGGTTE
T ss_pred             CCCEEEEEeCC---------CEEEEEECCCCce
Confidence            45566666542         4588899887653

>3c7x_A Matrix metalloproteinase-14; membrane protein interaction, Pro-MMP-2, TIMP-2, metastasis, calcium, cleavage on PAIR of basic residues, hydrolase; 1.70A {Homo sapiens}

Probab=89.89  E-value=4.7  Score=29.87  Aligned_cols=94  Identities=20%  Similarity=0.223  Sum_probs=49.3

Q ss_pred             CCCEEEEEcCcccCCCccccccCCceeEEEcCCCcE---EEEecCC--CCCCCcCceEEEE--CCEEEEEcCccCCCCcc
Q psy14331        113 DKGQLWMFGGEFSSASESQFHHYKDLWVFRMGEKKW---EKIVCKD--TPPSRSGHRMIAL--KKHLVVFGGFHDNLREA  185 (265)
Q Consensus       113 ~~~~iyv~GG~~~~~~~~~~~~~~~~~~yd~~~~~W---~~~~~~~--~p~~~~~~~~~~~--~~~iyv~GG~~~~~~~~  185 (265)
                      .++++|++-|             +.+|+|+..+...   +.+....  +|..... ++...  ++++|+|-|        
T Consensus        60 ~~g~~yfFkg-------------~~yw~~~~~~~~~gyPk~I~~~~~glP~~~ID-AA~~~~~~g~~yfFkG--------  117 (196)
T 3c7x_A           60 KDGKFVFFKG-------------DKHWVFDEASLEPGYPKHIKELGRGLPTDKID-AALFWMPNGKTYFFRG--------  117 (196)
T ss_dssp             TTSCEEEEET-------------TEEEEEETTEECTTCSEEGGGTCBSCCSSCCS-EEEEETTTTEEEEEET--------
T ss_pred             CCCcEEEecC-------------CEEEEEeCCcccCCCCeEhhhcCCCCCCCccc-EEEEEccCCEEEEEEC--------
Confidence            4788999977             3478887432110   1122211  3323222 44443  589999977        


Q ss_pred             ccCCceEEEEcCCCceE-----EeccCCCCCCCCCCceEEEeCCC-eEEEEcCc
Q psy14331        186 KYYNDVHIFDLETYAWK-----KIEPLGAGPAPRSGCQMAATPDG-KILISGGY  233 (265)
Q Consensus       186 ~~~~~v~~y~~~~~~W~-----~~~~~~~~p~~~~~~~~~~~~~~-~iyi~GG~  233 (265)
                         +..|+||..+++-+     .+..-..+|.  .-.++....++ ++|.+-|.
T Consensus       118 ---~~yw~yd~~~~~v~~gyPk~i~~~~gip~--~idaAf~~~~~~~~YfFkg~  166 (196)
T 3c7x_A          118 ---NKYYRFNEELRAVDSEYPKNIKVWEGIPE--SPRGSFMGSDEVFTYFYKGN  166 (196)
T ss_dssp             ---TEEEEEETTTTEECTTCSEEGGGSBTCCS--SCSEEEECTTSSEEEEEETT
T ss_pred             ---CEEEEEeCCcccccCCCCccHHHCCCcCC--CcceeEEecCCCEEEEEECC
Confidence               45789998765322     1111111232  22344444344 89998664

>1nir_A Nitrite reductase; hemoprotein, denitrification, domain swapping; HET: HEC DHE; 2.15A {Pseudomonas aeruginosa} SCOP: a.3.1.2 b.70.2.1 PDB: 1bl9_A* 1n15_A* 1n50_A* 1n90_A* 1gjq_A* 1nno_A* 1hzv_A* 1hzu_A*

Probab=89.70  E-value=9.5  Score=33.07  Aligned_cols=93  Identities=10%  Similarity=-0.014  Sum_probs=47.9

Q ss_pred             HHHhhcccceEEEeccCCCCCCCceeeEEecCCCEEEEECcEEeCCCceeeCCCcccCceEEEEeee-c---CCCCCCCc
Q psy14331         27 IEAEEKRKNKVIEKVVPEPTRRANFSFLAHPDKDQLILFGGEFYDGQKFVFGSPKALDHLILMNLFV-S---APGAPPPR  102 (265)
Q Consensus        27 ~~~~d~~~~~w~~~~~~~p~~r~~~~~~~~~~~~~lyv~GG~~~~~~~~~~~~~~~~~~~~~yd~w~-~---~~~~p~~r  102 (265)
                      +..+|..+.+......   .....|.+++.++++.||+.+.               -+.+..||+|. +   ...++...
T Consensus       161 V~v~D~~t~~~~~~i~---~g~~~~~v~~spdg~~l~v~~~---------------d~~V~v~D~~~~t~~~~~~i~~g~  222 (543)
T 1nir_A          161 IALVDGDSKKIVKVID---TGYAVHISRMSASGRYLLVIGR---------------DARIDMIDLWAKEPTKVAEIKIGI  222 (543)
T ss_dssp             EEEEETTTCCEEEEEE---CSTTEEEEEECTTSCEEEEEET---------------TSEEEEEETTSSSCEEEEEEECCS
T ss_pred             EEEEECCCceEEEEEe---cCcccceEEECCCCCEEEEECC---------------CCeEEEEECcCCCCcEEEEEecCC
Confidence            4556766665533221   1122566667778888888765               24566666631 1   11122222


Q ss_pred             cccceEEEec----CCCEEEEEcCcccCCCccccccCCceeEEEcCCCcEE
Q psy14331        103 CSHQMVALSA----DKGQLWMFGGEFSSASESQFHHYKDLWVFRMGEKKWE  149 (265)
Q Consensus       103 ~~~~~~~~~~----~~~~iyv~GG~~~~~~~~~~~~~~~~~~yd~~~~~W~  149 (265)
                      .. ..+.+..    .++.+|+.+-.           -+.+.++|..+.+-.
T Consensus       223 ~p-~~va~sp~~~~dg~~l~v~~~~-----------~~~v~v~D~~t~~~~  261 (543)
T 1nir_A          223 EA-RSVESSKFKGYEDRYTIAGAYW-----------PPQFAIMDGETLEPK  261 (543)
T ss_dssp             EE-EEEEECCSTTCTTTEEEEEEEE-----------SSEEEEEETTTCCEE
T ss_pred             Cc-ceEEeCCCcCCCCCEEEEEEcc-----------CCeEEEEeccccccc
Confidence            22 2233443    35566665422           245778888776543

>3v9f_A Two-component system sensor histidine kinase/RESP regulator, hybrid (ONE-component...; beta-propeller, beta-sandwich; 3.30A {Bacteroides thetaiotaomicron}

Probab=89.65  E-value=4.9  Score=36.50  Aligned_cols=81  Identities=6%  Similarity=0.015  Sum_probs=47.8

Q ss_pred             eEEEcCCCcEEEEecCC-CCCCCcCceEEEE-CCEEEEEcCccCCCCccccCCceEEEEcCCCceEEeccCCCCCCCCCC
Q psy14331        139 WVFRMGEKKWEKIVCKD-TPPSRSGHRMIAL-KKHLVVFGGFHDNLREAKYYNDVHIFDLETYAWKKIEPLGAGPAPRSG  216 (265)
Q Consensus       139 ~~yd~~~~~W~~~~~~~-~p~~~~~~~~~~~-~~~iyv~GG~~~~~~~~~~~~~v~~y~~~~~~W~~~~~~~~~p~~~~~  216 (265)
                      .+||+.+++++...... +|.... .+++.. ++.|++.+.           +.+.+||+.+.+++.......++.....
T Consensus       562 ~~~d~~~~~~~~~~~~~gl~~~~i-~~i~~d~~g~lW~~t~-----------~Gl~~~~~~~~~~~~~~~~dGl~~~~f~  629 (781)
T 3v9f_A          562 CFPSARNFDYQVFQRKEGLPNTHI-RAISEDKNGNIWASTN-----------TGISCYITSKKCFYTYDHSNNIPQGSFI  629 (781)
T ss_dssp             EESCTTTCCCEEECGGGTCSCCCC-CEEEECSSSCEEEECS-----------SCEEEEETTTTEEEEECGGGTCCSSCEE
T ss_pred             EEECCCCCcEEEccccCCCCCceE-EEEEECCCCCEEEEcC-----------CceEEEECCCCceEEecccCCccccccc
Confidence            78888888877765332 333332 344443 567777542           4588999999998887764444544332


Q ss_pred             -ceEEEeCCCeEEEEc
Q psy14331        217 -CQMAATPDGKILISG  231 (265)
Q Consensus       217 -~~~~~~~~~~iyi~G  231 (265)
                       .+++...++.||+-+
T Consensus       630 ~~~~~~~~~G~l~~g~  645 (781)
T 3v9f_A          630 SGCVTKDHNGLIYFGS  645 (781)
T ss_dssp             EEEEEECTTSCEEEEE
T ss_pred             cCceEECCCCEEEEEC
Confidence             233333356666543

>4a2l_A BT_4663, two-component system sensor histidine kinase/RESP; transcription, beta-propeller; HET: PGE PG4 MES 2PE; 2.60A {Bacteroides thetaiotaomicron} PDB: 4a2m_A*

Probab=89.22  E-value=13  Score=33.86  Aligned_cols=94  Identities=13%  Similarity=0.229  Sum_probs=55.7

Q ss_pred             CCCEEEEEcCcccCCCccccccCCceeEEEcCCCcEEEEecCC-CCCCCcCceEEEE-CCEEEEEcCccCCCCccccCCc
Q psy14331        113 DKGQLWMFGGEFSSASESQFHHYKDLWVFRMGEKKWEKIVCKD-TPPSRSGHRMIAL-KKHLVVFGGFHDNLREAKYYND  190 (265)
Q Consensus       113 ~~~~iyv~GG~~~~~~~~~~~~~~~~~~yd~~~~~W~~~~~~~-~p~~~~~~~~~~~-~~~iyv~GG~~~~~~~~~~~~~  190 (265)
                      .++.|++...             .-+.+||+.+++++...... +|... -.+++.. ++.|++.+.           +.
T Consensus       552 ~~g~lWigT~-------------~Gl~~~d~~~~~~~~~~~~~gl~~~~-i~~i~~d~~g~lWi~t~-----------~G  606 (795)
T 4a2l_A          552 SNGIIWVGTR-------------EGFYCFNEKDKQIKRYNTTNGLPNNV-VYGILEDSFGRLWLSTN-----------RG  606 (795)
T ss_dssp             TTSCEEEEES-------------SCEEEEETTTTEEEEECGGGTCSCSC-EEEEEECTTSCEEEEET-----------TE
T ss_pred             CCCCEEEEeC-------------CCceeECCCCCcEEEeCCCCCCchhh-eEEEEECCCCCEEEEcC-----------Cc
Confidence            3577777532             23889999999888765332 33222 2233333 467777542           45


Q ss_pred             eEEEEcCCCceEEeccCCCCCCCCCC-ceEEEeCCCeEEEEc
Q psy14331        191 VHIFDLETYAWKKIEPLGAGPAPRSG-CQMAATPDGKILISG  231 (265)
Q Consensus       191 v~~y~~~~~~W~~~~~~~~~p~~~~~-~~~~~~~~~~iyi~G  231 (265)
                      +.+||+.+.+++.......++..... .+++...++.||+-+
T Consensus       607 l~~~~~~~~~~~~~~~~dGl~~~~f~~~~~~~~~~G~l~~g~  648 (795)
T 4a2l_A          607 ISCFNPETEKFRNFTESDGLQSNQFNTASYCRTSVGQMYFGG  648 (795)
T ss_dssp             EEEEETTTTEEEEECGGGTCSCSCEEEEEEEECTTSCEEEEE
T ss_pred             eEEEcCCCCcEEEcCCcCCCccccCccCceeECCCCeEEEec
Confidence            88999999999877654434544432 333444456666544

>3no2_A Uncharacterized protein; six-bladed beta-propeller, structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE CIT PEG; 1.35A {Bacteroides caccae}

Probab=89.08  E-value=6.7  Score=30.52  Aligned_cols=158  Identities=11%  Similarity=-0.034  Sum_probs=74.7

Q ss_pred             HHHhhcccce--EEEeccCCCCCCCceeeEEecCCCEEEEECcEEeCCCceeeCCCcccCceEEEEe-----eecCCCCC
Q psy14331         27 IEAEEKRKNK--VIEKVVPEPTRRANFSFLAHPDKDQLILFGGEFYDGQKFVFGSPKALDHLILMNL-----FVSAPGAP   99 (265)
Q Consensus        27 ~~~~d~~~~~--w~~~~~~~p~~r~~~~~~~~~~~~~lyv~GG~~~~~~~~~~~~~~~~~~~~~yd~-----w~~~~~~p   99 (265)
                      +..+|..+.+  |+.. .  +.....|.+.+.+ ++.+++. +               -+.+..||+     |....  +
T Consensus        17 v~~~d~~tG~~~w~~~-~--~~~~~~~~~~~~p-dG~ilvs-~---------------~~~V~~~d~~G~~~W~~~~--~   74 (276)
T 3no2_A           17 IAIINKDTKEIVWEYP-L--EKGWECNSVAATK-AGEILFS-Y---------------SKGAKMITRDGRELWNIAA--P   74 (276)
T ss_dssp             EEEEETTTTEEEEEEE-C--CTTCCCCEEEECT-TSCEEEE-C---------------BSEEEEECTTSCEEEEEEC--C
T ss_pred             EEEEECCCCeEEEEeC-C--CccCCCcCeEECC-CCCEEEe-C---------------CCCEEEECCCCCEEEEEcC--C
Confidence            5567775555  6542 1  1112334555554 4556663 2               245677776     55433  1


Q ss_pred             CCccccceEEEecCCCEEEEEcCcccCCCccccccCCceeEEEcCCC-cEEEEecCCC--CCCCcCceEEEECCEEEEEc
Q psy14331        100 PPRCSHQMVALSADKGQLWMFGGEFSSASESQFHHYKDLWVFRMGEK-KWEKIVCKDT--PPSRSGHRMIALKKHLVVFG  176 (265)
Q Consensus       100 ~~r~~~~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~~~yd~~~~-~W~~~~~~~~--p~~~~~~~~~~~~~~iyv~G  176 (265)
                      .....+++..+  .++.+++.....          ...++.+|+... .|+.......  +...........++.+++..
T Consensus        75 ~~~~~~~~~~~--~dG~~lv~~~~~----------~~~v~~vd~~Gk~l~~~~~~~~~~~~~~~~~~v~~~~~G~~lv~~  142 (276)
T 3no2_A           75 AGCEMQTARIL--PDGNALVAWCGH----------PSTILEVNMKGEVLSKTEFETGIERPHAQFRQINKNKKGNYLVPL  142 (276)
T ss_dssp             TTCEEEEEEEC--TTSCEEEEEEST----------TEEEEEECTTSCEEEEEEECCSCSSGGGSCSCCEECTTSCEEEEE
T ss_pred             CCccccccEEC--CCCCEEEEecCC----------CCEEEEEeCCCCEEEEEeccCCCCcccccccCceECCCCCEEEEe
Confidence            11122333333  266666654321          235778887443 2443221111  11111112223355555543


Q ss_pred             CccCCCCccccCCceEEEEcCCC-ceEEeccCCCCCCCCCCceEEEeCCCeEEEEcCcc
Q psy14331        177 GFHDNLREAKYYNDVHIFDLETY-AWKKIEPLGAGPAPRSGCQMAATPDGKILISGGYS  234 (265)
Q Consensus       177 G~~~~~~~~~~~~~v~~y~~~~~-~W~~~~~~~~~p~~~~~~~~~~~~~~~iyi~GG~~  234 (265)
                      ..         ...|.+||+.-+ .|+.-...  .|     +++....++.++|.+..+
T Consensus       143 ~~---------~~~v~~~d~~G~~~w~~~~~~--~~-----~~~~~~~~g~~~v~~~~~  185 (276)
T 3no2_A          143 FA---------TSEVREIAPNGQLLNSVKLSG--TP-----FSSAFLDNGDCLVACGDA  185 (276)
T ss_dssp             TT---------TTEEEEECTTSCEEEEEECSS--CC-----CEEEECTTSCEEEECBTT
T ss_pred             cC---------CCEEEEECCCCCEEEEEECCC--Cc-----cceeEcCCCCEEEEeCCC
Confidence            31         256889998732 36644321  12     334455577888876543

>1jmx_B Amine dehydrogenase; oxidoreductase; HET: TRQ HEC; 1.90A {Pseudomonas putida} SCOP: b.69.2.2 PDB: 1jmz_B*

Probab=89.04  E-value=3.5  Score=32.59  Aligned_cols=67  Identities=9%  Similarity=0.168  Sum_probs=35.5

Q ss_pred             CCCEEEEECcEEeCCCceeeCCCcccCceEEEEe----eecCCCCCCCccccceEEEecCCCEEEEEcCcccCCCccccc
Q psy14331         58 DKDQLILFGGEFYDGQKFVFGSPKALDHLILMNL----FVSAPGAPPPRCSHQMVALSADKGQLWMFGGEFSSASESQFH  133 (265)
Q Consensus        58 ~~~~lyv~GG~~~~~~~~~~~~~~~~~~~~~yd~----w~~~~~~p~~r~~~~~~~~~~~~~~iyv~GG~~~~~~~~~~~  133 (265)
                      .++.+|+.++.              .+.++++|+    ....-..+.....+ .+.+...++.+|+.+..          
T Consensus         9 ~~~~~~v~~~~--------------~~~v~~~d~~~~~~~~~~~~~~~~~~~-~~~~s~dg~~~~v~~~~----------   63 (349)
T 1jmx_B            9 AGHEYMIVTNY--------------PNNLHVVDVASDTVYKSCVMPDKFGPG-TAMMAPDNRTAYVLNNH----------   63 (349)
T ss_dssp             TTCEEEEEEET--------------TTEEEEEETTTTEEEEEEECSSCCSSC-EEEECTTSSEEEEEETT----------
T ss_pred             CCCEEEEEeCC--------------CCeEEEEECCCCcEEEEEecCCCCCCc-eeEECCCCCEEEEEeCC----------
Confidence            46777777652              356777887    11110111100122 23343334567777642          


Q ss_pred             cCCceeEEEcCCCcEEE
Q psy14331        134 HYKDLWVFRMGEKKWEK  150 (265)
Q Consensus       134 ~~~~~~~yd~~~~~W~~  150 (265)
                       ...+.++|+.+++-..
T Consensus        64 -~~~i~~~d~~t~~~~~   79 (349)
T 1jmx_B           64 -YGDIYGIDLDTCKNTF   79 (349)
T ss_dssp             -TTEEEEEETTTTEEEE
T ss_pred             -CCcEEEEeCCCCcEEE
Confidence             3568999998876543

>4aez_A CDC20, WD repeat-containing protein SLP1; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe}

Probab=89.01  E-value=8.3  Score=31.49  Aligned_cols=105  Identities=17%  Similarity=0.196  Sum_probs=53.4

Q ss_pred             eEEEecCCCEEEEEcCcccCCCccccccCCceeEEEcCCCcEEEEecCCCCCCCcCceEEEE--CC-EEEEEcCccCCCC
Q psy14331        107 MVALSADKGQLWMFGGEFSSASESQFHHYKDLWVFRMGEKKWEKIVCKDTPPSRSGHRMIAL--KK-HLVVFGGFHDNLR  183 (265)
Q Consensus       107 ~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~~~yd~~~~~W~~~~~~~~p~~~~~~~~~~~--~~-~iyv~GG~~~~~~  183 (265)
                      ++.+...+..+++.||...         -..+..||..+++-...-...  ..   ...+..  ++ .+++.+|..    
T Consensus       264 ~~~~~p~~~~ll~~~~gs~---------d~~i~i~d~~~~~~~~~~~~~--~~---v~~~~~s~~~~~l~~~~g~~----  325 (401)
T 4aez_A          264 AVAWCPWQSNLLATGGGTM---------DKQIHFWNAATGARVNTVDAG--SQ---VTSLIWSPHSKEIMSTHGFP----  325 (401)
T ss_dssp             EEEECTTSTTEEEEECCTT---------TCEEEEEETTTCCEEEEEECS--SC---EEEEEECSSSSEEEEEECTT----
T ss_pred             EEEECCCCCCEEEEecCCC---------CCEEEEEECCCCCEEEEEeCC--Cc---EEEEEECCCCCeEEEEeecC----
Confidence            3344444556777765211         245889998877543332211  11   122222  33 455544422    


Q ss_pred             ccccCCceEEEEcCCCceEEeccCCCCCCCCCCceEEEeCCCeEEEEcCccc
Q psy14331        184 EAKYYNDVHIFDLETYAWKKIEPLGAGPAPRSGCQMAATPDGKILISGGYSK  235 (265)
Q Consensus       184 ~~~~~~~v~~y~~~~~~W~~~~~~~~~p~~~~~~~~~~~~~~~iyi~GG~~~  235 (265)
                          -..+..||..+..........  .....-..+....++.+++.||.+.
T Consensus       326 ----dg~i~v~~~~~~~~~~~~~~~--~h~~~v~~~~~s~dg~~l~s~~~dg  371 (401)
T 4aez_A          326 ----DNNLSIWSYSSSGLTKQVDIP--AHDTRVLYSALSPDGRILSTAASDE  371 (401)
T ss_dssp             ----TCEEEEEEEETTEEEEEEEEE--CCSSCCCEEEECTTSSEEEEECTTS
T ss_pred             ----CCcEEEEecCCccceeEEEec--CCCCCEEEEEECCCCCEEEEEeCCC
Confidence                246888998887766554321  1111223334444677777777653

>3ba0_A Macrophage metalloelastase; FULL-length MMP-12, hemopexin domain, catalytic domain, domain interaction., calcium, extracellular matrix; 3.00A {Homo sapiens} PDB: 2jxy_A

Probab=88.72  E-value=8.9  Score=31.48  Aligned_cols=94  Identities=11%  Similarity=0.076  Sum_probs=47.9

Q ss_pred             CCEEEEEcCcccCCCccccccCCceeEEEcCCC--cE-EEEecCCCCCCC-cCceEEEE--CCEEEEEcCccCCCCcccc
Q psy14331        114 KGQLWMFGGEFSSASESQFHHYKDLWVFRMGEK--KW-EKIVCKDTPPSR-SGHRMIAL--KKHLVVFGGFHDNLREAKY  187 (265)
Q Consensus       114 ~~~iyv~GG~~~~~~~~~~~~~~~~~~yd~~~~--~W-~~~~~~~~p~~~-~~~~~~~~--~~~iyv~GG~~~~~~~~~~  187 (265)
                      ++++|+|-|.             .+|+|+....  .+ +.+...+.|... .--++...  ++++|+|-|          
T Consensus       236 ~g~~~fFkg~-------------~yWr~~~~~~~~gyPk~I~~~GlP~~~~~IDAA~~~~~~~~~yfFkG----------  292 (365)
T 3ba0_A          236 RNQVFLFKDD-------------KYWLISNLRPEPNYPKSIHSFGFPNFVKKIDAAVFNPRFYRTYFFVD----------  292 (365)
T ss_dssp             GTEEEEEETT-------------EEEECSTTSCTTTCSEETTTTTCCTTCCCCCEEEEETTTTEEEEEET----------
T ss_pred             CCEEEEEeCC-------------EEEEEcCCcccCCCCceeeeccCCCCCCCcCEEEEeCCCCEEEEEEC----------
Confidence            6899999773             3566653321  11 122222233311 12244444  579999977          


Q ss_pred             CCceEEEEcCCCceEE-----ecc-CCCCCCCCCCceEEEeCCCeEEEEcCc
Q psy14331        188 YNDVHIFDLETYAWKK-----IEP-LGAGPAPRSGCQMAATPDGKILISGGY  233 (265)
Q Consensus       188 ~~~v~~y~~~~~~W~~-----~~~-~~~~p~~~~~~~~~~~~~~~iyi~GG~  233 (265)
                       +..|+||..+++-..     +.. -+..|.  .-.+++...++++|.|-|.
T Consensus       293 -~~yw~yd~~~~~v~~gyPk~I~~~f~g~p~--~iDaA~~~~~g~~YfFkg~  341 (365)
T 3ba0_A          293 -NQYWRYDERRQMMDPGYPKLITKNFQGIGP--KIDAVFYSKNKYYYFFQGS  341 (365)
T ss_dssp             -TEEEEEETTTTEECSSCCCCHHHHSTTCCS--SCSEEEEETTTEEEEEETT
T ss_pred             -CEEEEEeCCcceecCCCCcchhhcCCCCCC--ccceeeEecCCcEEEEeCC
Confidence             468999987654221     100 111222  2234444447889988664

>1itv_A MMP9; adaptive molecular recognition, beta propeller, dimer, hydrolase; 1.95A {Homo sapiens} SCOP: b.66.1.1

Probab=88.58  E-value=6  Score=29.28  Aligned_cols=65  Identities=12%  Similarity=0.277  Sum_probs=40.6

Q ss_pred             cCCCEEEEEcCcccCCCccccccCCceeEEEcCCCcEEE-----Ee-cC-CCCCCCcCceEEEECCEEEEEcCccCCCCc
Q psy14331        112 ADKGQLWMFGGEFSSASESQFHHYKDLWVFRMGEKKWEK-----IV-CK-DTPPSRSGHRMIALKKHLVVFGGFHDNLRE  184 (265)
Q Consensus       112 ~~~~~iyv~GG~~~~~~~~~~~~~~~~~~yd~~~~~W~~-----~~-~~-~~p~~~~~~~~~~~~~~iyv~GG~~~~~~~  184 (265)
                      ..++++|++-|             +..|+||..+++-..     +. .. +.|.  .-.++...++.+|.|-|       
T Consensus       107 ~~~g~~yfFkg-------------~~ywr~d~~~~~~~~gyPr~i~~~w~Gvp~--~idaa~~~~g~~Yffkg-------  164 (195)
T 1itv_A          107 SGRGKMLLFSG-------------RRLWRFDVKAQMVDPRSASEVDRMFPGVPL--DTHDVFQFREKAYFCQD-------  164 (195)
T ss_dssp             CSTTEEEEEET-------------TEEEEEETTTTEECGGGCEEHHHHSTTSCS--SCSEEEEETTEEEEEET-------
T ss_pred             cCCCeEEEEeC-------------CEEEEEeCCcccccCCCccChhhcCCCCCC--CCCEEEEeCCeEEEEeC-------
Confidence            34789999977             348899987653211     11 11 1222  23456666899999987       


Q ss_pred             cccCCceEEEEcCCCceE
Q psy14331        185 AKYYNDVHIFDLETYAWK  202 (265)
Q Consensus       185 ~~~~~~v~~y~~~~~~W~  202 (265)
                          +..++||..+.+=.
T Consensus       165 ----~~y~~~~~~~~~v~  178 (195)
T 1itv_A          165 ----RFYWRVSSRSELNQ  178 (195)
T ss_dssp             ----TEEEEEECCTTCCE
T ss_pred             ----CEEEEEECCccEEe
Confidence                36788888776533

>3v9f_A Two-component system sensor histidine kinase/RESP regulator, hybrid (ONE-component...; beta-propeller, beta-sandwich; 3.30A {Bacteroides thetaiotaomicron}

Probab=88.52  E-value=14  Score=33.48  Aligned_cols=82  Identities=9%  Similarity=0.097  Sum_probs=48.0

Q ss_pred             ceeEEEcCCCcEEEEecCC-CCCCCcCceEEEE-CCEEEEEcCccCCCCccccCCce-EEEEcCCCceEEeccCCCCCCC
Q psy14331        137 DLWVFRMGEKKWEKIVCKD-TPPSRSGHRMIAL-KKHLVVFGGFHDNLREAKYYNDV-HIFDLETYAWKKIEPLGAGPAP  213 (265)
Q Consensus       137 ~~~~yd~~~~~W~~~~~~~-~p~~~~~~~~~~~-~~~iyv~GG~~~~~~~~~~~~~v-~~y~~~~~~W~~~~~~~~~p~~  213 (265)
                      -+++||+.+++++...... +|... -.+++.. ++.|++-..           +.+ .+||+.+.+++.......+|..
T Consensus       516 Gl~~~~~~~~~~~~~~~~~~l~~~~-i~~i~~d~~g~lWi~T~-----------~Glv~~~d~~~~~~~~~~~~~gl~~~  583 (781)
T 3v9f_A          516 GVGIYTPDMQLVRKFNQYEGFCSNT-INQIYRSSKGQMWLATG-----------EGLVCFPSARNFDYQVFQRKEGLPNT  583 (781)
T ss_dssp             CEEEECTTCCEEEEECTTTTCSCSC-EEEEEECTTSCEEEEET-----------TEEEEESCTTTCCCEEECGGGTCSCC
T ss_pred             CEEEEeCCCCeEEEccCCCCCCCCe-eEEEEECCCCCEEEEEC-----------CCceEEECCCCCcEEEccccCCCCCc
Confidence            3888999999888775432 22111 1122222 456776432           346 8899999888877654334543


Q ss_pred             CCCceEEEeCCCeEEEEc
Q psy14331        214 RSGCQMAATPDGKILISG  231 (265)
Q Consensus       214 ~~~~~~~~~~~~~iyi~G  231 (265)
                      .. .+++.-.++.|++.+
T Consensus       584 ~i-~~i~~d~~g~lW~~t  600 (781)
T 3v9f_A          584 HI-RAISEDKNGNIWAST  600 (781)
T ss_dssp             CC-CEEEECSSSCEEEEC
T ss_pred             eE-EEEEECCCCCEEEEc
Confidence            33 444444466788765

>3u4y_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomi CS, MCSG; 2.99A {Desulfotomaculum acetoxidans}

Probab=88.33  E-value=7.9  Score=30.37  Aligned_cols=131  Identities=9%  Similarity=0.033  Sum_probs=65.2

Q ss_pred             CCCEEEEECcEEeCCCceeeCCCcccCceEEEEe----eecCCCCCCCccccceEEEecCCCEEEEEcCcccCCCccccc
Q psy14331         58 DKDQLILFGGEFYDGQKFVFGSPKALDHLILMNL----FVSAPGAPPPRCSHQMVALSADKGQLWMFGGEFSSASESQFH  133 (265)
Q Consensus        58 ~~~~lyv~GG~~~~~~~~~~~~~~~~~~~~~yd~----w~~~~~~p~~r~~~~~~~~~~~~~~iyv~GG~~~~~~~~~~~  133 (265)
                      ..+.+|+....              -+.+..+|+    ....-..  +.... .+.+...++.+|+.+..          
T Consensus         8 ~~~~~~v~~~~--------------~~~v~~~d~~~~~~~~~~~~--~~~~~-~~~~s~dg~~l~~~~~~----------   60 (331)
T 3u4y_A            8 TSNFGIVVEQH--------------LRRISFFSTDTLEILNQITL--GYDFV-DTAITSDCSNVVVTSDF----------   60 (331)
T ss_dssp             CCCEEEEEEGG--------------GTEEEEEETTTCCEEEEEEC--CCCEE-EEEECSSSCEEEEEEST----------
T ss_pred             CCCEEEEEecC--------------CCeEEEEeCcccceeeeEEc--cCCcc-eEEEcCCCCEEEEEeCC----------
Confidence            46777777652              356777777    1111111  12222 34444445567877653          


Q ss_pred             cCCceeEEEcCCCcE--EEEecCCCCCCCcCceEEEE--CCEEEEEcCccCCCCccccCCceEEEEcCCCceEEeccCCC
Q psy14331        134 HYKDLWVFRMGEKKW--EKIVCKDTPPSRSGHRMIAL--KKHLVVFGGFHDNLREAKYYNDVHIFDLETYAWKKIEPLGA  209 (265)
Q Consensus       134 ~~~~~~~yd~~~~~W--~~~~~~~~p~~~~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~~v~~y~~~~~~W~~~~~~~~  209 (265)
                       .+.++.+|+.+++-  ..+....  .+.  ++++..  ++.+| .+...+.      ...|..+|+.+.+-...-..+ 
T Consensus        61 -~~~i~~~d~~~~~~~~~~~~~~~--~~~--~~~~~s~dg~~l~-~~~~~~~------~~~i~v~d~~~~~~~~~~~~~-  127 (331)
T 3u4y_A           61 -CQTLVQIETQLEPPKVVAIQEGQ--SSM--ADVDITPDDQFAV-TVTGLNH------PFNMQSYSFLKNKFISTIPIP-  127 (331)
T ss_dssp             -TCEEEEEECSSSSCEEEEEEECS--SCC--CCEEECTTSSEEE-ECCCSSS------SCEEEEEETTTTEEEEEEECC-
T ss_pred             -CCeEEEEECCCCceeEEecccCC--CCc--cceEECCCCCEEE-EecCCCC------cccEEEEECCCCCeEEEEECC-
Confidence             24689999988874  2232221  222  213332  34566 4332111      137999999887654433321 


Q ss_pred             CCCCCCCceEEEeCCCe-EEEEcC
Q psy14331        210 GPAPRSGCQMAATPDGK-ILISGG  232 (265)
Q Consensus       210 ~p~~~~~~~~~~~~~~~-iyi~GG  232 (265)
                          ..-+.++...+++ +|+.+.
T Consensus       128 ----~~~~~~~~spdg~~l~~~~~  147 (331)
T 3u4y_A          128 ----YDAVGIAISPNGNGLILIDR  147 (331)
T ss_dssp             ----TTEEEEEECTTSSCEEEEEE
T ss_pred             ----CCccceEECCCCCEEEEEec
Confidence                1113444444553 666543

>2dg1_A DRP35, lactonase; beta propeller, hydrolase; 1.72A {Staphylococcus aureus} SCOP: b.68.6.1 PDB: 2dg0_A 2dso_A

Probab=88.21  E-value=8.2  Score=30.42  Aligned_cols=97  Identities=9%  Similarity=-0.017  Sum_probs=53.4

Q ss_pred             CCEEEEEcCcccCCCccccccCCceeEEEcCCCcEEEEecCCCCCCCcCceEEEE-CCEEEEEcCccCCCCccccCCceE
Q psy14331        114 KGQLWMFGGEFSSASESQFHHYKDLWVFRMGEKKWEKIVCKDTPPSRSGHRMIAL-KKHLVVFGGFHDNLREAKYYNDVH  192 (265)
Q Consensus       114 ~~~iyv~GG~~~~~~~~~~~~~~~~~~yd~~~~~W~~~~~~~~p~~~~~~~~~~~-~~~iyv~GG~~~~~~~~~~~~~v~  192 (265)
                      +++||+.+..           ...+++||+.+++...+...   ....-.+++.. ++.+|+....+..     ....|+
T Consensus        55 ~g~l~~~~~~-----------~~~i~~~d~~~~~~~~~~~~---~~~~~~~i~~~~dg~l~v~~~~~~~-----~~~~i~  115 (333)
T 2dg1_A           55 QGQLFLLDVF-----------EGNIFKINPETKEIKRPFVS---HKANPAAIKIHKDGRLFVCYLGDFK-----STGGIF  115 (333)
T ss_dssp             TSCEEEEETT-----------TCEEEEECTTTCCEEEEEEC---SSSSEEEEEECTTSCEEEEECTTSS-----SCCEEE
T ss_pred             CCCEEEEECC-----------CCEEEEEeCCCCcEEEEeeC---CCCCcceEEECCCCcEEEEeCCCCC-----CCceEE
Confidence            6778887653           24689999998887765422   11122233333 5678876532211     124789


Q ss_pred             EEEcCCCceEEeccCCCCCCCCCCceEEEeCCCeEEEEc
Q psy14331        193 IFDLETYAWKKIEPLGAGPAPRSGCQMAATPDGKILISG  231 (265)
Q Consensus       193 ~y~~~~~~W~~~~~~~~~p~~~~~~~~~~~~~~~iyi~G  231 (265)
                      +||+.+...+.+...  ......-..++.-.++.+|+..
T Consensus       116 ~~d~~~~~~~~~~~~--~~~~~~~~~i~~d~~g~l~v~~  152 (333)
T 2dg1_A          116 AATENGDNLQDIIED--LSTAYCIDDMVFDSKGGFYFTD  152 (333)
T ss_dssp             EECTTSCSCEEEECS--SSSCCCEEEEEECTTSCEEEEE
T ss_pred             EEeCCCCEEEEEEcc--CccCCcccceEECCCCCEEEEe
Confidence            999988876633221  1111222333444466777754

>4e54_B DNA damage-binding protein 2; beta barrel, double helix, DDB1:WD40 beta-barrel fold, DNA D DNA repair, HOST-virus interactions; HET: DNA 3DR; 2.85A {Homo sapiens} PDB: 3ei4_B*

Probab=87.88  E-value=11  Score=31.32  Aligned_cols=66  Identities=9%  Similarity=0.005  Sum_probs=37.4

Q ss_pred             CCEEEEEcCcccCCCccccccCCceeEEEcCCCcEEEEecCCCCCCCcCceEEEE-CCEEEEEcCccCCCCccccCCceE
Q psy14331        114 KGQLWMFGGEFSSASESQFHHYKDLWVFRMGEKKWEKIVCKDTPPSRSGHRMIAL-KKHLVVFGGFHDNLREAKYYNDVH  192 (265)
Q Consensus       114 ~~~iyv~GG~~~~~~~~~~~~~~~~~~yd~~~~~W~~~~~~~~p~~~~~~~~~~~-~~~iyv~GG~~~~~~~~~~~~~v~  192 (265)
                      ++.+++.|+.+           ..+-++|++++....+..... ......++... ++.+++.|+.+         ..|.
T Consensus       176 ~~~~l~s~s~D-----------~~v~iwd~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~l~~g~~d---------g~i~  234 (435)
T 4e54_B          176 NTNQFYASSME-----------GTTRLQDFKGNILRVFASSDT-INIWFCSLDVSASSRMVVTGDNV---------GNVI  234 (435)
T ss_dssp             CTTEEEEECSS-----------SCEEEEETTSCEEEEEECCSS-CSCCCCCEEEETTTTEEEEECSS---------SBEE
T ss_pred             CCCEEEEEeCC-----------CEEEEeeccCCceeEEeccCC-CCccEEEEEECCCCCEEEEEeCC---------CcEe
Confidence            55666666643           347788988877665544321 11112223332 56777777753         3577


Q ss_pred             EEEcCCCc
Q psy14331        193 IFDLETYA  200 (265)
Q Consensus       193 ~y~~~~~~  200 (265)
                      .+|+....
T Consensus       235 ~wd~~~~~  242 (435)
T 4e54_B          235 LLNMDGKE  242 (435)
T ss_dssp             EEESSSCB
T ss_pred             eeccCcce
Confidence            88876543

>1kv9_A Type II quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM EPE; 1.90A {Pseudomonas putida} SCOP: a.3.1.6 b.70.1.1

Probab=87.76  E-value=15  Score=32.84  Aligned_cols=114  Identities=11%  Similarity=0.124  Sum_probs=64.1

Q ss_pred             CCCEEEEECcEEeCCCceeeCCCcccCceEEEEe------eecCCCCCCCc--------cccceEEEecCCCEEEEEcCc
Q psy14331         58 DKDQLILFGGEFYDGQKFVFGSPKALDHLILMNL------FVSAPGAPPPR--------CSHQMVALSADKGQLWMFGGE  123 (265)
Q Consensus        58 ~~~~lyv~GG~~~~~~~~~~~~~~~~~~~~~yd~------w~~~~~~p~~r--------~~~~~~~~~~~~~~iyv~GG~  123 (265)
                      .++.||+...               ...++.+|.      |......+...        .....++.   +++||+... 
T Consensus        65 ~~g~vyv~~~---------------~~~v~AlD~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~v~v~~~-  125 (668)
T 1kv9_A           65 HDGVIYTSMS---------------WSRVIAVDAASGKELWRYDPEVAKVKARTSCCDAVNRGVALW---GDKVYVGTL-  125 (668)
T ss_dssp             ETTEEEEEEG---------------GGEEEEEETTTCCEEEEECCCCCGGGGGGCTTCSCCCCCEEE---BTEEEEECT-
T ss_pred             ECCEEEEECC---------------CCeEEEEECCCChhceEECCCCCccccccccccCCccceEEE---CCEEEEEcC-
Confidence            3899999765               356777886      76654433211        01222333   788888643 


Q ss_pred             ccCCCccccccCCceeEEEcCCCc--EEEEecCCCCCCCcCceEEEECCEEEEEcCccCCCCccccCCceEEEEcCCCc-
Q psy14331        124 FSSASESQFHHYKDLWVFRMGEKK--WEKIVCKDTPPSRSGHRMIALKKHLVVFGGFHDNLREAKYYNDVHIFDLETYA-  200 (265)
Q Consensus       124 ~~~~~~~~~~~~~~~~~yd~~~~~--W~~~~~~~~p~~~~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~v~~y~~~~~~-  200 (265)
                                 -..++.+|..+++  |+.-............+.++.++.+|+-.+....    .....|+.||+.+.+ 
T Consensus       126 -----------dg~l~alD~~tG~~~W~~~~~~~~~~~~~~~~P~v~~~~v~vg~~~~~~----~~~g~v~a~D~~tG~~  190 (668)
T 1kv9_A          126 -----------DGRLIALDAKTGKAIWSQQTTDPAKPYSITGAPRVVKGKVIIGNGGAEY----GVRGFVSAYDADTGKL  190 (668)
T ss_dssp             -----------TSEEEEEETTTCCEEEEEECSCTTSSCBCCSCCEEETTEEEECCBCTTT----CCBCEEEEEETTTCCE
T ss_pred             -----------CCEEEEEECCCCCEeeeeccCCCCCcceecCCCEEECCEEEEeCCCCCc----CCCCEEEEEECCCCcE
Confidence                       2468999998874  8765322100111222344568888773221111    123579999998754 


Q ss_pred             -eEEec
Q psy14331        201 -WKKIE  205 (265)
Q Consensus       201 -W~~~~  205 (265)
                       |+.-.
T Consensus       191 ~W~~~~  196 (668)
T 1kv9_A          191 AWRFYT  196 (668)
T ss_dssp             EEEEES
T ss_pred             EEEecc
Confidence             87643

>4ery_A WD repeat-containing protein 5; WD40, WIN motif, beta propeller, 3-10 helix, lysine methyltransferase, RBBP5, ASH2L, core complex; 1.30A {Homo sapiens} PDB: 2h6k_A* 2h68_A* 2h6q_A* 3eg6_A 4erq_A 2h6n_A 4erz_A 4es0_A 4esg_A 4ewr_A 2gnq_A 2xl2_A 2xl3_A 3uvk_A* 3psl_A* 3uvl_A 3uvm_A 3uvn_A 3uvo_A 2h14_A ...

Probab=87.18  E-value=9.1  Score=29.81  Aligned_cols=94  Identities=17%  Similarity=0.131  Sum_probs=47.1

Q ss_pred             CCEEEEEcCcccCCCccccccCCceeEEEcCCCcEEEEecCCCCCCCcCc-eEEE-ECCEEEEEcCccCCCCccccCCce
Q psy14331        114 KGQLWMFGGEFSSASESQFHHYKDLWVFRMGEKKWEKIVCKDTPPSRSGH-RMIA-LKKHLVVFGGFHDNLREAKYYNDV  191 (265)
Q Consensus       114 ~~~iyv~GG~~~~~~~~~~~~~~~~~~yd~~~~~W~~~~~~~~p~~~~~~-~~~~-~~~~iyv~GG~~~~~~~~~~~~~v  191 (265)
                      ++..++.|+.+           ..+..||..+.+-...-... ....... .... .++.+++.|+.+         ..|
T Consensus       203 ~~~~l~~~~~d-----------~~i~iwd~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~l~sg~~d---------g~i  261 (312)
T 4ery_A          203 NGKYILAATLD-----------NTLKLWDYSKGKCLKTYTGH-KNEKYCIFANFSVTGGKWIVSGSED---------NLV  261 (312)
T ss_dssp             TSSEEEEEETT-----------TEEEEEETTTTEEEEEECSS-CCSSSCCCEEEECSSSCEEEECCTT---------SCE
T ss_pred             CCCEEEEEcCC-----------CeEEEEECCCCcEEEEEEec-CCceEEEEEEEEeCCCcEEEEECCC---------CEE
Confidence            45566666532           45888998877543322111 1111111 2222 256677777753         358


Q ss_pred             EEEEcCCCceE-EeccCCCCCCCCCCceEEEeCCCeEEEEcCc
Q psy14331        192 HIFDLETYAWK-KIEPLGAGPAPRSGCQMAATPDGKILISGGY  233 (265)
Q Consensus       192 ~~y~~~~~~W~-~~~~~~~~p~~~~~~~~~~~~~~~iyi~GG~  233 (265)
                      ..||+.+.+-. .+..     ....-..++...++.+++.++.
T Consensus       262 ~vwd~~~~~~~~~~~~-----h~~~v~~~~~~p~~~~l~s~~~  299 (312)
T 4ery_A          262 YIWNLQTKEIVQKLQG-----HTDVVISTACHPTENIIASAAL  299 (312)
T ss_dssp             EEEETTTCCEEEEECC-----CSSCEEEEEECSSSSEEEEEEC
T ss_pred             EEEECCCchhhhhhhc-----cCCcEEEEeecCcCCceEEEEc
Confidence            88998876532 2221     1111233344445666766654

>3dwl_C Actin-related protein 2/3 complex subunit 1; propellor, actin-binding, ATP-binding, cytoskeleton, nucleot binding, WD repeat; HET: ATP; 3.78A {Schizosaccharomyces pombe}

Probab=86.88  E-value=4.4  Score=32.59  Aligned_cols=39  Identities=15%  Similarity=-0.014  Sum_probs=19.4

Q ss_pred             HHHhhcccceEEEeccCCCCCCCc-eeeEEecCCCEEEEECc
Q psy14331         27 IEAEEKRKNKVIEKVVPEPTRRAN-FSFLAHPDKDQLILFGG   67 (265)
Q Consensus        27 ~~~~d~~~~~w~~~~~~~p~~r~~-~~~~~~~~~~~lyv~GG   67 (265)
                      +..||..+..|.. ...+...... .++.+.+ ++.+++.|+
T Consensus        35 i~iw~~~~~~~~~-~~~~~~h~~~v~~~~~s~-~~~~l~s~s   74 (377)
T 3dwl_C           35 VELYEQDGNGWKH-ARTFSDHDKIVTCVDWAP-KSNRIVTCS   74 (377)
T ss_dssp             BCEEEEETTEEEE-CCCBCCCSSCEEEEEECT-TTCCEEEEE
T ss_pred             EEEEEccCCceEE-EEEEecCCceEEEEEEeC-CCCEEEEEe
Confidence            6667777776655 3333322222 2334443 345555555

>2xbg_A YCF48-like protein; photosynthesis, photosystem II, beta-propeller, assembly FAC; 1.50A {Thermosynechococcus elongatus}

Probab=86.67  E-value=11  Score=30.14  Aligned_cols=151  Identities=15%  Similarity=0.149  Sum_probs=73.8

Q ss_pred             ccceEEEeccCCCCCCCce-eeEEecCCCEEEEECcEEeCCCceeeCCCcccCceEEEEe----eecCCCCC-CCccccc
Q psy14331         33 RKNKVIEKVVPEPTRRANF-SFLAHPDKDQLILFGGEFYDGQKFVFGSPKALDHLILMNL----FVSAPGAP-PPRCSHQ  106 (265)
Q Consensus        33 ~~~~w~~~~~~~p~~r~~~-~~~~~~~~~~lyv~GG~~~~~~~~~~~~~~~~~~~~~yd~----w~~~~~~p-~~r~~~~  106 (265)
                      .-.+|..+....+.+.... ++.+.  ++.+|+.|-               ...+++-+-    |....... .+-....
T Consensus        64 gG~tW~~~~~~~~~~~~~~~~i~~~--~~~~~~~g~---------------~g~i~~S~DgG~tW~~~~~~~~~~~~~~~  126 (327)
T 2xbg_A           64 GGQTWEPRTLVLDHSDYRFNSVSFQ--GNEGWIVGE---------------PPIMLHTTDGGQSWSQIPLDPKLPGSPRL  126 (327)
T ss_dssp             TTSSCEECCCCCSCCCCEEEEEEEE--TTEEEEEEE---------------TTEEEEESSTTSSCEECCCCTTCSSCEEE
T ss_pred             CCCCCeECCCCCCCCCccEEEEEec--CCeEEEEEC---------------CCeEEEECCCCCCceECccccCCCCCeEE
Confidence            3457877433322222222 33443  578888643               223333222    77765321 1211222


Q ss_pred             eEEEecCCCEEEEEcCcccCCCccccccCCceeEEEcCCCcEEEEecCCCCCCCcCceEEEE-CCEEEEEcCccCCCCcc
Q psy14331        107 MVALSADKGQLWMFGGEFSSASESQFHHYKDLWVFRMGEKKWEKIVCKDTPPSRSGHRMIAL-KKHLVVFGGFHDNLREA  185 (265)
Q Consensus       107 ~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~~~yd~~~~~W~~~~~~~~p~~~~~~~~~~~-~~~iyv~GG~~~~~~~~  185 (265)
                      .+..  .++.+|+.|..            ..+++-+-...+|+.+...   .+...+.++.. ++.++++|-.       
T Consensus       127 i~~~--~~~~~~~~~~~------------g~v~~S~DgG~tW~~~~~~---~~~~~~~~~~~~~~~~~~~g~~-------  182 (327)
T 2xbg_A          127 IKAL--GNGSAEMITNV------------GAIYRTKDSGKNWQALVQE---AIGVMRNLNRSPSGEYVAVSSR-------  182 (327)
T ss_dssp             EEEE--ETTEEEEEETT------------CCEEEESSTTSSEEEEECS---CCCCEEEEEECTTSCEEEEETT-------
T ss_pred             EEEE--CCCCEEEEeCC------------ccEEEEcCCCCCCEEeecC---CCcceEEEEEcCCCcEEEEECC-------
Confidence            3323  26788887641            2244443345689998643   22223334333 4566666531       


Q ss_pred             ccCCceEEEEcC-CCceEEeccCCCCCCCCCCceEEEeCCCeEEEEc
Q psy14331        186 KYYNDVHIFDLE-TYAWKKIEPLGAGPAPRSGCQMAATPDGKILISG  231 (265)
Q Consensus       186 ~~~~~v~~y~~~-~~~W~~~~~~~~~p~~~~~~~~~~~~~~~iyi~G  231 (265)
                         ..+++-+-. ..+|+.+..    +.....+.++...++.+|+.+
T Consensus       183 ---G~~~~S~d~gG~tW~~~~~----~~~~~~~~~~~~~~g~~~~~~  222 (327)
T 2xbg_A          183 ---GSFYSTWEPGQTAWEPHNR----TTSRRLHNMGFTPDGRLWMIV  222 (327)
T ss_dssp             ---SSEEEEECTTCSSCEEEEC----CSSSCEEEEEECTTSCEEEEE
T ss_pred             ---CcEEEEeCCCCCceeECCC----CCCCccceeEECCCCCEEEEe
Confidence               235554333 578998864    223333444444456677665

>2hqs_A Protein TOLB; TOLB, PAL, TOL, transport protein-lipoprotein complex; 1.50A {Escherichia coli} SCOP: b.68.4.1 c.51.2.1 PDB: 3iax_A 1c5k_A 2ivz_A 2w8b_B 2w8b_A 1crz_A

Probab=86.64  E-value=12  Score=30.84  Aligned_cols=59  Identities=10%  Similarity=0.112  Sum_probs=33.0

Q ss_pred             CceeEEEcCCCcEEEEecCCCCCCCcCceEEEE--CCEEEEEcCccCCCCccccCCceEEEEcCCCceEEec
Q psy14331        136 KDLWVFRMGEKKWEKIVCKDTPPSRSGHRMIAL--KKHLVVFGGFHDNLREAKYYNDVHIFDLETYAWKKIE  205 (265)
Q Consensus       136 ~~~~~yd~~~~~W~~~~~~~~p~~~~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~~v~~y~~~~~~W~~~~  205 (265)
                      ..++.+|+.+++...+...    .. .......  +++.++++.....      ...|+.+|+.+..-+.+.
T Consensus       247 ~~i~~~d~~~~~~~~l~~~----~~-~~~~~~~spdg~~l~~~s~~~g------~~~i~~~d~~~~~~~~l~  307 (415)
T 2hqs_A          247 LNLYVMDLASGQIRQVTDG----RS-NNTEPTWFPDSQNLAFTSDQAG------RPQVYKVNINGGAPQRIT  307 (415)
T ss_dssp             CEEEEEETTTCCEEECCCC----SS-CEEEEEECTTSSEEEEEECTTS------SCEEEEEETTSSCCEECC
T ss_pred             ceEEEEECCCCCEEeCcCC----CC-cccceEECCCCCEEEEEECCCC------CcEEEEEECCCCCEEEEe
Confidence            5699999998876555322    11 1122222  4544444432111      246899999887755544

>3ba0_A Macrophage metalloelastase; FULL-length MMP-12, hemopexin domain, catalytic domain, domain interaction., calcium, extracellular matrix; 3.00A {Homo sapiens} PDB: 2jxy_A

Probab=86.63  E-value=12  Score=30.69  Aligned_cols=67  Identities=12%  Similarity=0.092  Sum_probs=41.0

Q ss_pred             CCCEEEEEcCcccCCCccccccCCceeEEEcCCCcEEEEecCC-----CCCCCcCceEEEE-CCEEEEEcCccCCCCccc
Q psy14331        113 DKGQLWMFGGEFSSASESQFHHYKDLWVFRMGEKKWEKIVCKD-----TPPSRSGHRMIAL-KKHLVVFGGFHDNLREAK  186 (265)
Q Consensus       113 ~~~~iyv~GG~~~~~~~~~~~~~~~~~~yd~~~~~W~~~~~~~-----~p~~~~~~~~~~~-~~~iyv~GG~~~~~~~~~  186 (265)
                      .++++|++-|             +..|+||..+++-..-.+..     .-.+..-.++... ++++|.|=|         
T Consensus       283 ~~~~~yfFkG-------------~~yw~yd~~~~~v~~gyPk~I~~~f~g~p~~iDaA~~~~~g~~YfFkg---------  340 (365)
T 3ba0_A          283 RFYRTYFFVD-------------NQYWRYDERRQMMDPGYPKLITKNFQGIGPKIDAVFYSKNKYYYFFQG---------  340 (365)
T ss_dssp             TTTEEEEEET-------------TEEEEEETTTTEECSSCCCCHHHHSTTCCSSCSEEEEETTTEEEEEET---------
T ss_pred             CCCEEEEEEC-------------CEEEEEeCCcceecCCCCcchhhcCCCCCCccceeeEecCCcEEEEeC---------
Confidence            3689999976             45899997665322110110     0011222355555 789999977         


Q ss_pred             cCCceEEEEcCCCceEE
Q psy14331        187 YYNDVHIFDLETYAWKK  203 (265)
Q Consensus       187 ~~~~v~~y~~~~~~W~~  203 (265)
                        +..|+||..+.+-..
T Consensus       341 --~~ywr~d~~~~~v~~  355 (365)
T 3ba0_A          341 --SNQFEYDFLLQRITK  355 (365)
T ss_dssp             --TEEEEEETTTTEEEE
T ss_pred             --CEEEEEECCccEEec
Confidence              468999988877655

>2aq5_A Coronin-1A; WD40 repeat, 7-bladed beta-propeller, structural protein; HET: CME; 1.75A {Mus musculus} PDB: 2b4e_A

Probab=86.54  E-value=12  Score=30.51  Aligned_cols=70  Identities=13%  Similarity=0.066  Sum_probs=36.0

Q ss_pred             CCEEEEEcCcccCCCccccccCCceeEEEcCCCcEEEEecCCCCCCCcCceEEEECCEEEEEcCccCCCCccccCCceEE
Q psy14331        114 KGQLWMFGGEFSSASESQFHHYKDLWVFRMGEKKWEKIVCKDTPPSRSGHRMIALKKHLVVFGGFHDNLREAKYYNDVHI  193 (265)
Q Consensus       114 ~~~iyv~GG~~~~~~~~~~~~~~~~~~yd~~~~~W~~~~~~~~p~~~~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~v~~  193 (265)
                      ++.+++.|+.+           ..+..+|+.+++-...-............+..-++.+++.|.....      -..|..
T Consensus       187 ~~~~l~~~~~d-----------~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~~~~------d~~i~i  249 (402)
T 2aq5_A          187 DGALICTSCRD-----------KRVRVIEPRKGTVVAEKDRPHEGTRPVHAVFVSEGKILTTGFSRMS------ERQVAL  249 (402)
T ss_dssp             TSSCEEEEETT-----------SEEEEEETTTTEEEEEEECSSCSSSCCEEEECSTTEEEEEEECTTC------CEEEEE
T ss_pred             CCCEEEEEecC-----------CcEEEEeCCCCceeeeeccCCCCCcceEEEEcCCCcEEEEeccCCC------CceEEE
Confidence            55666666642           4588999988754332211111111121222236777777621111      246888


Q ss_pred             EEcCCCc
Q psy14331        194 FDLETYA  200 (265)
Q Consensus       194 y~~~~~~  200 (265)
                      ||+.+..
T Consensus       250 wd~~~~~  256 (402)
T 2aq5_A          250 WDTKHLE  256 (402)
T ss_dssp             EETTBCS
T ss_pred             EcCcccc
Confidence            9987743

>2z2n_A Virginiamycin B lyase; seven-bladed beta-propeller, antibiotic resistance, E mechanism, virginiamycin B hydrolase streptogramin; HET: MSE; 1.65A {Staphylococcus aureus} PDB: 2z2o_A 2z2p_A*

Probab=86.18  E-value=9.7  Score=29.16  Aligned_cols=91  Identities=8%  Similarity=0.020  Sum_probs=48.2

Q ss_pred             CCEEEEEcCcccCCCccccccCCceeEEEcCCCcEEEEecCCCCCCCcCceEEEE-CCEEEEEcCccCCCCccccCCceE
Q psy14331        114 KGQLWMFGGEFSSASESQFHHYKDLWVFRMGEKKWEKIVCKDTPPSRSGHRMIAL-KKHLVVFGGFHDNLREAKYYNDVH  192 (265)
Q Consensus       114 ~~~iyv~GG~~~~~~~~~~~~~~~~~~yd~~~~~W~~~~~~~~p~~~~~~~~~~~-~~~iyv~GG~~~~~~~~~~~~~v~  192 (265)
                      ++.||+....           ...+.++|+ +++........  ....-..++.. ++.+|+....         .+.++
T Consensus       109 ~g~l~v~~~~-----------~~~i~~~d~-~g~~~~~~~~~--~~~~~~~i~~~~~g~l~v~~~~---------~~~i~  165 (299)
T 2z2n_A          109 NGDIWFTEMN-----------GNRIGRITD-DGKIREYELPN--KGSYPSFITLGSDNALWFTENQ---------NNAIG  165 (299)
T ss_dssp             TSCEEEEETT-----------TTEEEEECT-TCCEEEEECSS--TTCCEEEEEECTTSCEEEEETT---------TTEEE
T ss_pred             CCCEEEEecC-----------CceEEEECC-CCCEEEecCCC--CCCCCceEEEcCCCCEEEEeCC---------CCEEE
Confidence            5788887532           245888988 66655543221  11122233333 5678875421         25688


Q ss_pred             EEEcCCCceEEeccCCCCCCCCCCceEEEeCCCeEEEEc
Q psy14331        193 IFDLETYAWKKIEPLGAGPAPRSGCQMAATPDGKILISG  231 (265)
Q Consensus       193 ~y~~~~~~W~~~~~~~~~p~~~~~~~~~~~~~~~iyi~G  231 (265)
                      ++|+ +.+........  . ...-..++.-.++.+|+..
T Consensus       166 ~~~~-~g~~~~~~~~~--~-~~~~~~i~~~~~g~l~v~~  200 (299)
T 2z2n_A          166 RITE-SGDITEFKIPT--P-ASGPVGITKGNDDALWFVE  200 (299)
T ss_dssp             EECT-TCCEEEEECSS--T-TCCEEEEEECTTSSEEEEE
T ss_pred             EEcC-CCcEEEeeCCC--C-CCcceeEEECCCCCEEEEc
Confidence            9998 77776653211  1 1111233333356787764

>1nir_A Nitrite reductase; hemoprotein, denitrification, domain swapping; HET: HEC DHE; 2.15A {Pseudomonas aeruginosa} SCOP: a.3.1.2 b.70.2.1 PDB: 1bl9_A* 1n15_A* 1n50_A* 1n90_A* 1gjq_A* 1nno_A* 1hzv_A* 1hzu_A*

Probab=86.11  E-value=16  Score=31.61  Aligned_cols=86  Identities=12%  Similarity=0.121  Sum_probs=41.8

Q ss_pred             CCceeEEEcCCCcEEEEecCCCCCCCcCceEEEE-CC-EEEEEcCccCCCCccccCCceEEEEcCCCceEEeccCCCCCC
Q psy14331        135 YKDLWVFRMGEKKWEKIVCKDTPPSRSGHRMIAL-KK-HLVVFGGFHDNLREAKYYNDVHIFDLETYAWKKIEPLGAGPA  212 (265)
Q Consensus       135 ~~~~~~yd~~~~~W~~~~~~~~p~~~~~~~~~~~-~~-~iyv~GG~~~~~~~~~~~~~v~~y~~~~~~W~~~~~~~~~p~  212 (265)
                      .+.++.+|..+.+-..+....  ..+.-+.++.. ++ .+|+....         .+.|..+|+.+.+-...-..+..|.
T Consensus       301 ~g~i~vvd~~~~~~l~~~~i~--~~~~~~~~~~spdg~~l~va~~~---------~~~v~v~D~~tg~l~~~i~~g~~ph  369 (543)
T 1nir_A          301 TGKVLLVNYKDIDNLTVTSIG--AAPFLHDGGWDSSHRYFMTAANN---------SNKVAVIDSKDRRLSALVDVGKTPH  369 (543)
T ss_dssp             TTEEEEEECTTSSSCEEEEEE--CCSSCCCEEECTTSCEEEEEEGG---------GTEEEEEETTTTEEEEEEECSSSBC
T ss_pred             CCeEEEEEecCCCcceeEEec--cCcCccCceECCCCCEEEEEecC---------CCeEEEEECCCCeEEEeeccCCCCC
Confidence            356888988764321111111  12222333333 34 45554432         3568889999886554333333344


Q ss_pred             CCCCceEEEeCC-CeEEEEcC
Q psy14331        213 PRSGCQMAATPD-GKILISGG  232 (265)
Q Consensus       213 ~~~~~~~~~~~~-~~iyi~GG  232 (265)
                      +..+... ...+ +.+|+.+.
T Consensus       370 ~g~g~~~-~~p~~g~~~~s~~  389 (543)
T 1nir_A          370 PGRGANF-VHPKYGPVWSTSH  389 (543)
T ss_dssp             CTTCEEE-EETTTEEEEEEEB
T ss_pred             CCCCccc-CCCCCccEEEecc
Confidence            4333332 2223 56777654

>1itv_A MMP9; adaptive molecular recognition, beta propeller, dimer, hydrolase; 1.95A {Homo sapiens} SCOP: b.66.1.1

Probab=86.04  E-value=8.6  Score=28.41  Aligned_cols=94  Identities=12%  Similarity=0.232  Sum_probs=49.2

Q ss_pred             CCEEEEEcCcccCCCccccccCCceeEEEcCCCcE-EEEecCCCCCC--CcCceEEEECCEEEEEcCccCCCCccccCCc
Q psy14331        114 KGQLWMFGGEFSSASESQFHHYKDLWVFRMGEKKW-EKIVCKDTPPS--RSGHRMIALKKHLVVFGGFHDNLREAKYYND  190 (265)
Q Consensus       114 ~~~iyv~GG~~~~~~~~~~~~~~~~~~yd~~~~~W-~~~~~~~~p~~--~~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~  190 (265)
                      ++++|++-|             +..|+|+..+..- +.+...+.|..  ....+....++++|+|-|           +.
T Consensus        64 ~~~~yfFkG-------------~~yw~~~~~~~~~Pk~i~~~G~p~~~~~iDAA~~~~~g~~yfFkg-----------~~  119 (195)
T 1itv_A           64 SKKLFFFSG-------------RQVWVYTGASVLGPRRLDKLGLGADVAQVTGALRSGRGKMLLFSG-----------RR  119 (195)
T ss_dssp             TCCEEEEET-------------TEEEEEETTEEEEEEEGGGGTCCTTCCCCCEEEECSTTEEEEEET-----------TE
T ss_pred             CCeEEEEeC-------------CEEEEEcCCccCCCEEeeecccCCCccceeEEEEcCCCeEEEEeC-----------CE
Confidence            678999977             3477887542111 01111223332  223223222679999977           36


Q ss_pred             eEEEEcCCCceE-----Eec-cCCCCCCCCCCceEEEeCCCeEEEEcCcc
Q psy14331        191 VHIFDLETYAWK-----KIE-PLGAGPAPRSGCQMAATPDGKILISGGYS  234 (265)
Q Consensus       191 v~~y~~~~~~W~-----~~~-~~~~~p~~~~~~~~~~~~~~~iyi~GG~~  234 (265)
                      .|+||..+++=.     .+. .-+.+|.  .-.++... ++.+|.+-|..
T Consensus       120 ywr~d~~~~~~~~gyPr~i~~~w~Gvp~--~idaa~~~-~g~~Yffkg~~  166 (195)
T 1itv_A          120 LWRFDVKAQMVDPRSASEVDRMFPGVPL--DTHDVFQF-REKAYFCQDRF  166 (195)
T ss_dssp             EEEEETTTTEECGGGCEEHHHHSTTSCS--SCSEEEEE-TTEEEEEETTE
T ss_pred             EEEEeCCcccccCCCccChhhcCCCCCC--CCCEEEEe-CCeEEEEeCCE
Confidence            789998765422     111 1111222  22344444 68999987754

>1yiq_A Quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM; 2.20A {Pseudomonas putida}

Probab=85.94  E-value=19  Score=32.28  Aligned_cols=114  Identities=12%  Similarity=0.107  Sum_probs=65.0

Q ss_pred             CCCEEEEECcEEeCCCceeeCCCcccCceEEEEe------eecCCCCCCCc--------cccceEEEecCCCEEEEEcCc
Q psy14331         58 DKDQLILFGGEFYDGQKFVFGSPKALDHLILMNL------FVSAPGAPPPR--------CSHQMVALSADKGQLWMFGGE  123 (265)
Q Consensus        58 ~~~~lyv~GG~~~~~~~~~~~~~~~~~~~~~yd~------w~~~~~~p~~r--------~~~~~~~~~~~~~~iyv~GG~  123 (265)
                      .++.||+...               ...++.+|.      |......+...        ...+.+..   +++||+... 
T Consensus        69 ~~g~vyv~~~---------------~~~v~AlD~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~---~g~v~v~~~-  129 (689)
T 1yiq_A           69 VDGVMYTTGP---------------FSVVYALDARDGRLIWKYDPQSDRHRAGEACCDAVNRGVAVW---KGKVYVGVL-  129 (689)
T ss_dssp             ETTEEEEECG---------------GGCEEEEETTTCCEEEEECCCCCGGGGGGCTTCSCCCCCEEE---TTEEEEECT-
T ss_pred             ECCEEEEEcC---------------CCeEEEEECCCCceeEEEcCCCCccccccccccCCCCccEEE---CCEEEEEcc-
Confidence            3899999766               456888887      77654433110        11122333   788888653 


Q ss_pred             ccCCCccccccCCceeEEEcCCCc--EEEEec-CCCCCCCcCceEEEECCEEEEEcCccCCCCccccCCceEEEEcCCCc
Q psy14331        124 FSSASESQFHHYKDLWVFRMGEKK--WEKIVC-KDTPPSRSGHRMIALKKHLVVFGGFHDNLREAKYYNDVHIFDLETYA  200 (265)
Q Consensus       124 ~~~~~~~~~~~~~~~~~yd~~~~~--W~~~~~-~~~p~~~~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~v~~y~~~~~~  200 (265)
                                 -..+..+|..+++  |+.-.. ..........+.++.++.+|+-.+....    ..-..|+.||+.+.+
T Consensus       130 -----------dg~l~AlDa~TG~~~W~~~~~~~~~~~~~~~~sP~v~~g~v~vg~~~~~~----~~~g~v~a~D~~tG~  194 (689)
T 1yiq_A          130 -----------DGRLEAIDAKTGQRAWSVDTRADHKRSYTITGAPRVVNGKVVIGNGGAEF----GVRGYVTAYDAETGK  194 (689)
T ss_dssp             -----------TSEEEEEETTTCCEEEEEECCSCTTSCCBCCSCCEEETTEEEECCBCTTT----CCBCEEEEEETTTCC
T ss_pred             -----------CCEEEEEECCCCCEeeeecCcCCCCCCccccCCcEEECCEEEEEeCCCcc----CCCCEEEEEECCCCc
Confidence                       2458999998874  876543 1100111222345568888773221111    123579999998865


Q ss_pred             --eEEec
Q psy14331        201 --WKKIE  205 (265)
Q Consensus       201 --W~~~~  205 (265)
                        |+.-.
T Consensus       195 ~~W~~~~  201 (689)
T 1yiq_A          195 EAWRFYT  201 (689)
T ss_dssp             EEEEEES
T ss_pred             EEEEecc
Confidence              87653

>3scy_A Hypothetical bacterial 6-phosphogluconolactonase; 7-bladed beta-propeller, structural genomics, joint center F structural genomics, JCSG; HET: MSE; 1.50A {Bacteroides fragilis} PDB: 3fgb_A

Probab=85.88  E-value=9.6  Score=30.46  Aligned_cols=123  Identities=13%  Similarity=0.041  Sum_probs=59.2

Q ss_pred             eeeEEecCCCEEEEECcEEeCCCceeeCCCcccCceEEEEe----e---ecCCCCCCCccccceEEEecCCCEEEEEcCc
Q psy14331         51 FSFLAHPDKDQLILFGGEFYDGQKFVFGSPKALDHLILMNL----F---VSAPGAPPPRCSHQMVALSADKGQLWMFGGE  123 (265)
Q Consensus        51 ~~~~~~~~~~~lyv~GG~~~~~~~~~~~~~~~~~~~~~yd~----w---~~~~~~p~~r~~~~~~~~~~~~~~iyv~GG~  123 (265)
                      ..+++.|+++.+|+.+..              .+.+..||.    .   ......+........+.+...++.||+....
T Consensus       214 ~~~~~spdg~~l~v~~~~--------------~~~v~v~~~~~g~~~~~~~~~~~~~~~~~~~~i~~spdg~~l~v~~~~  279 (361)
T 3scy_A          214 RHLIFNSDGKFAYLINEI--------------GGTVIAFRYADGMLDEIQTVAADTVNAQGSGDIHLSPDGKYLYASNRL  279 (361)
T ss_dssp             EEEEECTTSSEEEEEETT--------------TCEEEEEEEETTEEEEEEEEESCSSCCCCEEEEEECTTSSEEEEEECS
T ss_pred             eEEEEcCCCCEEEEEcCC--------------CCeEEEEEecCCceEEeEEEecCCCCCCCcccEEECCCCCEEEEECCC
Confidence            345666677778887531              345667766    1   1122222222222344455445567765432


Q ss_pred             ccCCCccccccCCceeEEEc--CCCcEEEEecCCCCCCCcCceEEEE-CC-EEEEEcCccCCCCccccCCceEEEEcCCC
Q psy14331        124 FSSASESQFHHYKDLWVFRM--GEKKWEKIVCKDTPPSRSGHRMIAL-KK-HLVVFGGFHDNLREAKYYNDVHIFDLETY  199 (265)
Q Consensus       124 ~~~~~~~~~~~~~~~~~yd~--~~~~W~~~~~~~~p~~~~~~~~~~~-~~-~iyv~GG~~~~~~~~~~~~~v~~y~~~~~  199 (265)
                      .          .+.+.+|+.  .+++++.+....  ....-..++.. ++ .||+.+.. ..      .-.++.+|+.+.
T Consensus       280 ~----------~~~i~v~~~~~~~g~~~~~~~~~--~g~~~~~~~~spdg~~l~~~~~~-~~------~v~v~~~d~~~g  340 (361)
T 3scy_A          280 K----------ADGVAIFKVDETNGTLTKVGYQL--TGIHPRNFIITPNGKYLLVACRD-TN------VIQIFERDQATG  340 (361)
T ss_dssp             S----------SCEEEEEEECTTTCCEEEEEEEE--CSSCCCEEEECTTSCEEEEEETT-TT------EEEEEEECTTTC
T ss_pred             C----------CCEEEEEEEcCCCCcEEEeeEec--CCCCCceEEECCCCCEEEEEECC-CC------CEEEEEEECCCC
Confidence            0          134555555  567776665432  11111123332 44 45554432 11      123455677777


Q ss_pred             ceEEecc
Q psy14331        200 AWKKIEP  206 (265)
Q Consensus       200 ~W~~~~~  206 (265)
                      +-+.+..
T Consensus       341 ~~~~~~~  347 (361)
T 3scy_A          341 LLTDIKK  347 (361)
T ss_dssp             CEEECSC
T ss_pred             cEeecce
Confidence            7766653

>2pm9_A Protein WEB1, protein transport protein SEC31; beta propeller; 3.30A {Saccharomyces cerevisiae}

Probab=85.75  E-value=11  Score=30.44  Aligned_cols=99  Identities=6%  Similarity=0.031  Sum_probs=46.2

Q ss_pred             HHHhhcccceEEEeccCCCC-----CCCceeeEEecCCCEEEEECcEEeCCCceeeCCCcccCceEEEEee---ecCCCC
Q psy14331         27 IEAEEKRKNKVIEKVVPEPT-----RRANFSFLAHPDKDQLILFGGEFYDGQKFVFGSPKALDHLILMNLF---VSAPGA   98 (265)
Q Consensus        27 ~~~~d~~~~~w~~~~~~~p~-----~r~~~~~~~~~~~~~lyv~GG~~~~~~~~~~~~~~~~~~~~~yd~w---~~~~~~   98 (265)
                      +..+|..+.+..... ..+.     ...-.++++.+++..+++.|+.  ++.         ...+..||+-   .....+
T Consensus       190 v~iwd~~~~~~~~~~-~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~--d~~---------~~~i~~~d~~~~~~~~~~~  257 (416)
T 2pm9_A          190 ASIWDLKAKKEVIHL-SYTSPNSGIKQQLSVVEWHPKNSTRVATATG--SDN---------DPSILIWDLRNANTPLQTL  257 (416)
T ss_dssp             EEEEETTTTEEEEEE-CCCCCSSCCCCCEEEEEECSSCTTEEEEEEC--CSS---------SCCCCEEETTSTTSCSBCC
T ss_pred             EEEEECCCCCcceEE-eccccccccCCceEEEEECCCCCCEEEEEEC--CCC---------CceEEEEeCCCCCCCcEEe
Confidence            555666665543322 1221     2222344555455567777762  221         1266777771   111112


Q ss_pred             C-CCccccceEEEecCCCEEEEEcCcccCCCccccccCCceeEEEcCCCcE
Q psy14331         99 P-PPRCSHQMVALSADKGQLWMFGGEFSSASESQFHHYKDLWVFRMGEKKW  148 (265)
Q Consensus        99 p-~~r~~~~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~~~yd~~~~~W  148 (265)
                      . .....-..+.+...++.+++.|+.+           ..+..+|+.+.+-
T Consensus       258 ~~~~~~~v~~~~~s~~~~~~l~s~~~d-----------g~v~~wd~~~~~~  297 (416)
T 2pm9_A          258 NQGHQKGILSLDWCHQDEHLLLSSGRD-----------NTVLLWNPESAEQ  297 (416)
T ss_dssp             CSCCSSCEEEEEECSSCSSCEEEEESS-----------SEEEEECSSSCCE
T ss_pred             ecCccCceeEEEeCCCCCCeEEEEeCC-----------CCEEEeeCCCCcc
Confidence            1 1111222233322256677776642           4588888877653

>4a11_B DNA excision repair protein ERCC-8; DNA binding protein, DNA damage repair; HET: DNA; 3.31A {Homo sapiens}

Probab=85.48  E-value=13  Score=29.90  Aligned_cols=28  Identities=7%  Similarity=0.023  Sum_probs=15.5

Q ss_pred             EEEecCCCEEEEEcCcccCCCccccccCCceeEEEcCCC
Q psy14331        108 VALSADKGQLWMFGGEFSSASESQFHHYKDLWVFRMGEK  146 (265)
Q Consensus       108 ~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~~~yd~~~~  146 (265)
                      +.+...+..+++.|+.+           ..+..||+.+.
T Consensus       192 ~~~~~~~~~ll~~~~~d-----------g~i~i~d~~~~  219 (408)
T 4a11_B          192 VSWSPRYDYILATASAD-----------SRVKLWDVRRA  219 (408)
T ss_dssp             EEECSSCTTEEEEEETT-----------SCEEEEETTCS
T ss_pred             EEECCCCCcEEEEEcCC-----------CcEEEEECCCC
Confidence            33333334467777642           34777887654

>2p9w_A MAL S 1 allergenic protein; beta propeller; 1.35A {Malassezia sympodialis}

Probab=85.47  E-value=13  Score=30.04  Aligned_cols=147  Identities=12%  Similarity=0.103  Sum_probs=75.8

Q ss_pred             eEEecCCCEEEEECcEEeCCCceeeCCCcccCceEEEEe-------eecCCCCCCCccccceEEEecCCCEEEEEcCccc
Q psy14331         53 FLAHPDKDQLILFGGEFYDGQKFVFGSPKALDHLILMNL-------FVSAPGAPPPRCSHQMVALSADKGQLWMFGGEFS  125 (265)
Q Consensus        53 ~~~~~~~~~lyv~GG~~~~~~~~~~~~~~~~~~~~~yd~-------w~~~~~~p~~r~~~~~~~~~~~~~~iyv~GG~~~  125 (265)
                      +++. ..+.+||.+-.  .           +..++++++       |....+....+.+...+++...++.|++..+   
T Consensus       142 vavD-~~GnaYVt~s~--~-----------~~~I~rV~pdG~~~~~~~~~~~~~~~~~G~nGIv~~pdg~~Liv~~~---  204 (334)
T 2p9w_A          142 SAQD-RDGNSYVAFAL--G-----------MPAIARVSADGKTVSTFAWESGNGGQRPGYSGITFDPHSNKLIAFGG---  204 (334)
T ss_dssp             EEEC-TTSCEEEEEEE--S-----------SCEEEEECTTSCCEEEEEECCCCSSSCCSCSEEEEETTTTEEEEESS---
T ss_pred             eEEC-CCCCEEEeCCC--C-----------CCeEEEEeCCCCEEeeeeecCCCcccccCcceEEEeCCCCEEEEEcC---
Confidence            4444 57789997652  0           156788777       4433333445667777777655667777755   


Q ss_pred             CCCccccccCCceeEEEcCCCcEEEEecC--CCC-CCCcCce--EEEECCEEEEEcCccCCCCccccCCceEEEEcCCCc
Q psy14331        126 SASESQFHHYKDLWVFRMGEKKWEKIVCK--DTP-PSRSGHR--MIALKKHLVVFGGFHDNLREAKYYNDVHIFDLETYA  200 (265)
Q Consensus       126 ~~~~~~~~~~~~~~~yd~~~~~W~~~~~~--~~p-~~~~~~~--~~~~~~~iyv~GG~~~~~~~~~~~~~v~~y~~~~~~  200 (265)
                               ...+++||+.+-...+++..  +.. .....-.  ....+++++++.-.         .+.++.+--..+ 
T Consensus       205 ---------~g~L~~fD~~~pv~~~v~~~~~G~~~~~~~~dgilp~~~~G~vllV~~~---------~~~~~~l~S~Dg-  265 (334)
T 2p9w_A          205 ---------PRALTAFDVSKPYAWPEPVKINGDFGTLSGTEKIVTVPVGNESVLVGAR---------APYAISFRSWDN-  265 (334)
T ss_dssp             ---------SSSEEEEECSSSSCCCEECEESSCCCCCTTEEEEEEEEETTEEEEEEEE---------TTEEEEEECSST-
T ss_pred             ---------CCeEEEEcCCCCcceeecccccCCcccccCcccccccccCCEEEEEEcC---------CCCEEEEECCCC-
Confidence                     24588999874322122211  100 0001112  22247777555432         122333333333 


Q ss_pred             eEEeccCCCCCCC--CCCceEEEe----CCCeEEEEcCccc
Q psy14331        201 WKKIEPLGAGPAP--RSGCQMAAT----PDGKILISGGYSK  235 (265)
Q Consensus       201 W~~~~~~~~~p~~--~~~~~~~~~----~~~~iyi~GG~~~  235 (265)
                      |+.....+..|..  -.+.+++++    .+++||++.++-.
T Consensus       266 W~sa~~~g~~~~~~~~~g~tt~t~~~~~~~~~iYvv~~~f~  306 (334)
T 2p9w_A          266 WKSANIKKTKRSELQNSGFTAVADYYQGSEQGLYAVSAFFD  306 (334)
T ss_dssp             TSEEEEEEEECGGGGSSCEEEEEEEEETTEEEEEEEECCGG
T ss_pred             cceeEEeeeecCccccCceeEEEEeccccCCeEEEEeeecC
Confidence            8766554433332  234444444    5789999876543

>1flg_A Protein (quinoprotein ethanol dehydrogenase); superbarrel, oxidoreductase; HET: PQQ; 2.60A {Pseudomonas aeruginosa} SCOP: b.70.1.1

Probab=85.46  E-value=18  Score=31.66  Aligned_cols=112  Identities=11%  Similarity=0.125  Sum_probs=58.6

Q ss_pred             CCCEEEEECcEEeCCCceeeCCCcccCceEEEEe------eecCCCCCCCc------cccceEEEecCCCEEEEEcCccc
Q psy14331         58 DKDQLILFGGEFYDGQKFVFGSPKALDHLILMNL------FVSAPGAPPPR------CSHQMVALSADKGQLWMFGGEFS  125 (265)
Q Consensus        58 ~~~~lyv~GG~~~~~~~~~~~~~~~~~~~~~yd~------w~~~~~~p~~r------~~~~~~~~~~~~~~iyv~GG~~~  125 (265)
                      .+++||+...               .+.++.+|.      |......+...      .....++.   +++||+...   
T Consensus        67 ~~g~vyv~~~---------------~~~v~AlD~~tG~~~W~~~~~~~~~~~~~~~~~~~g~a~~---~~~v~~~t~---  125 (582)
T 1flg_A           67 SDGVIYVTAS---------------YSRLFALDAKTGKRLWTYNHRLPDDIRPCCDVVNRGAAIY---GDKVFFGTL---  125 (582)
T ss_dssp             ETTEEEEEET---------------TTEEEEEESSSCCEEEEEECCCCTTCCCSSCSCCCCCEEE---TTEEEEEET---
T ss_pred             ECCEEEEEcC---------------CCCEEEEECCCCcEEEEEcCCCCcccccccccCCCccEEE---CCEEEEEeC---
Confidence            3899999766               234777777      65543332211      11222333   888888532   


Q ss_pred             CCCccccccCCceeEEEcCCCc--EEEEecCCCCCCCcCceEEEECC------EEEEEcCccCCCCccccCCceEEEEcC
Q psy14331        126 SASESQFHHYKDLWVFRMGEKK--WEKIVCKDTPPSRSGHRMIALKK------HLVVFGGFHDNLREAKYYNDVHIFDLE  197 (265)
Q Consensus       126 ~~~~~~~~~~~~~~~yd~~~~~--W~~~~~~~~p~~~~~~~~~~~~~------~iyv~GG~~~~~~~~~~~~~v~~y~~~  197 (265)
                               -..++.+|..+++  |+.-.......-....+-++.++      .+|+ |.....   ......|+.||+.
T Consensus       126 ---------dg~l~AlD~~TG~~~W~~~~~~~~~~~~~~~sP~v~~~~~~G~~~v~v-g~~~~e---~~~~g~v~alD~~  192 (582)
T 1flg_A          126 ---------DASVVALNKNTGKVVWKKKFADHGAGYTMTGAPTIVKDGKTGKVLLIH-GSSGDE---FGVVGRLFARDPD  192 (582)
T ss_dssp             ---------TTEEEEEESSSCCEEEEEECSCGGGTCBCCSCCEEEECTTTCCEEEEE-CCBCGG---GCCBCEEEEECTT
T ss_pred             ---------CCEEEEEECCCCCEEeeecCCCCCcCcccccCCEEeCCCcCCcEEEEE-eccccc---cCCCCEEEEEECC
Confidence                     2468999998874  87643211000001112233444      5554 432111   0123579999998


Q ss_pred             CC--ceEE
Q psy14331        198 TY--AWKK  203 (265)
Q Consensus       198 ~~--~W~~  203 (265)
                      +.  .|+.
T Consensus       193 tG~~~W~~  200 (582)
T 1flg_A          193 TGEEIWMR  200 (582)
T ss_dssp             TCCEEEEE
T ss_pred             CCCEEeec
Confidence            75  4865

>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A

Probab=85.39  E-value=20  Score=32.17  Aligned_cols=96  Identities=14%  Similarity=0.069  Sum_probs=45.7

Q ss_pred             CCEEEEEcCcccCCCccccccCCceeEEEcCCCcEEEEecCCCCCCCcCceEEEE---CCEEEEEcCccCCCCccccCCc
Q psy14331        114 KGQLWMFGGEFSSASESQFHHYKDLWVFRMGEKKWEKIVCKDTPPSRSGHRMIAL---KKHLVVFGGFHDNLREAKYYND  190 (265)
Q Consensus       114 ~~~iyv~GG~~~~~~~~~~~~~~~~~~yd~~~~~W~~~~~~~~p~~~~~~~~~~~---~~~iyv~GG~~~~~~~~~~~~~  190 (265)
                      ++.+++.|+.+           ..+..+|..+..-.......  .......++..   ++..++.|+.+         ..
T Consensus       152 ~~~~l~~~~~d-----------g~v~vwd~~~~~~~~~~~~~--~~~~v~~~~~~~~~~~~~l~~~~~d---------g~  209 (814)
T 3mkq_A          152 DPSTFASGCLD-----------RTVKVWSLGQSTPNFTLTTG--QERGVNYVDYYPLPDKPYMITASDD---------LT  209 (814)
T ss_dssp             EEEEEEEEETT-----------SEEEEEETTCSSCSEEEECC--CTTCCCEEEECCSTTCCEEEEECTT---------SE
T ss_pred             CCCEEEEEeCC-----------CeEEEEECCCCcceeEEecC--CCCCEEEEEEEECCCCCEEEEEeCC---------CE
Confidence            45666666642           45788887655322221111  11111222222   55667777643         35


Q ss_pred             eEEEEcCCCceEEeccCCCCCCCCCCceEEEeCCCeEEEEcCccc
Q psy14331        191 VHIFDLETYAWKKIEPLGAGPAPRSGCQMAATPDGKILISGGYSK  235 (265)
Q Consensus       191 v~~y~~~~~~W~~~~~~~~~p~~~~~~~~~~~~~~~iyi~GG~~~  235 (265)
                      +..||..+.+-...-..    ....-..++...++.+++.|+.+.
T Consensus       210 i~~~d~~~~~~~~~~~~----~~~~v~~~~~~~~~~~l~~~~~dg  250 (814)
T 3mkq_A          210 IKIWDYQTKSCVATLEG----HMSNVSFAVFHPTLPIIISGSEDG  250 (814)
T ss_dssp             EEEEETTTTEEEEEEEC----CSSCEEEEEECSSSSEEEEEETTS
T ss_pred             EEEEECCCCcEEEEEcC----CCCCEEEEEEcCCCCEEEEEeCCC
Confidence            78888877553222110    111112333344566677766543

>2ojh_A Uncharacterized protein ATU1656/AGR_C_3050; TOLB, 6-stranded beta-propeller, structural genomics, PSI-2; 1.85A {Agrobacterium tumefaciens str}

Probab=85.11  E-value=11  Score=28.62  Aligned_cols=60  Identities=5%  Similarity=-0.059  Sum_probs=32.3

Q ss_pred             CCceeEEEcCCCcEEEEecCCCCCCCcCceEEEE-CC-EEEEEcCccCCCCccccCCceEEEEcCCCceEEecc
Q psy14331        135 YKDLWVFRMGEKKWEKIVCKDTPPSRSGHRMIAL-KK-HLVVFGGFHDNLREAKYYNDVHIFDLETYAWKKIEP  206 (265)
Q Consensus       135 ~~~~~~yd~~~~~W~~~~~~~~p~~~~~~~~~~~-~~-~iyv~GG~~~~~~~~~~~~~v~~y~~~~~~W~~~~~  206 (265)
                      ...++.++..+..-+.+...   ..  ...+... ++ .+++.+..+.       ...++.+++.+.....+..
T Consensus       109 ~~~l~~~~~~~~~~~~~~~~---~~--~~~~~~spdg~~l~~~~~~~~-------~~~l~~~~~~~~~~~~~~~  170 (297)
T 2ojh_A          109 KSAIYLLPSTGGTPRLMTKN---LP--SYWHGWSPDGKSFTYCGIRDQ-------VFDIYSMDIDSGVETRLTH  170 (297)
T ss_dssp             SCEEEEEETTCCCCEECCSS---SS--EEEEEECTTSSEEEEEEEETT-------EEEEEEEETTTCCEEECCC
T ss_pred             cceEEEEECCCCceEEeecC---CC--ccceEECCCCCEEEEEECCCC-------ceEEEEEECCCCcceEccc
Confidence            46789999887765544322   11  1122222 33 4554454322       1357778887777665554

>1kb0_A Quinohemoprotein alcohol dehydrogenase; beta-propeller fold, cytochrome C, oxidoreductase; HET: TRO HEC PQQ; 1.44A {Comamonas testosteroni} SCOP: a.3.1.6 b.70.1.1

Probab=85.06  E-value=21  Score=31.95  Aligned_cols=115  Identities=10%  Similarity=0.129  Sum_probs=65.8

Q ss_pred             CCCEEEEECcEEeCCCceeeCCCcccCceEEEEe------eecCCCCCCCc--------cccceEEEecCCCEEEEEcCc
Q psy14331         58 DKDQLILFGGEFYDGQKFVFGSPKALDHLILMNL------FVSAPGAPPPR--------CSHQMVALSADKGQLWMFGGE  123 (265)
Q Consensus        58 ~~~~lyv~GG~~~~~~~~~~~~~~~~~~~~~yd~------w~~~~~~p~~r--------~~~~~~~~~~~~~~iyv~GG~  123 (265)
                      .++.||+...               .+.++.+|.      |......+...        .....+..   +++||+... 
T Consensus        76 ~~g~vyv~~~---------------~~~v~AlD~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~a~~---~~~v~v~~~-  136 (677)
T 1kb0_A           76 VDGIMYVSAS---------------WSVVHAIDTRTGNRIWTYDPQIDRSTGFKGCCDVVNRGVALW---KGKVYVGAW-  136 (677)
T ss_dssp             ETTEEEEECG---------------GGCEEEEETTTTEEEEEECCCCCGGGGGGSSSCSCCCCCEEE---TTEEEEECT-
T ss_pred             ECCEEEEECC---------------CCeEEEEECCCCcEEEEEcCCCCccccccccccCCCCCceEE---CCEEEEEcC-
Confidence            3899999876               357888887      76654433211        11223332   788888743 


Q ss_pred             ccCCCccccccCCceeEEEcCCCc--EEEEecCCCCC-CCcCceEEEECCEEEEEcCccCCCCccccCCceEEEEcCCCc
Q psy14331        124 FSSASESQFHHYKDLWVFRMGEKK--WEKIVCKDTPP-SRSGHRMIALKKHLVVFGGFHDNLREAKYYNDVHIFDLETYA  200 (265)
Q Consensus       124 ~~~~~~~~~~~~~~~~~yd~~~~~--W~~~~~~~~p~-~~~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~v~~y~~~~~~  200 (265)
                                 -..++.+|..+++  |+.-.....+. .....+.++.++.+|+-.+....    .....|+.||..+.+
T Consensus       137 -----------dg~l~alD~~tG~~~W~~~~~~~~~~~~~~~~~p~v~~~~v~v~~~~~~~----~~~g~v~a~D~~tG~  201 (677)
T 1kb0_A          137 -----------DGRLIALDAATGKEVWHQNTFEGQKGSLTITGAPRVFKGKVIIGNGGAEY----GVRGYITAYDAETGE  201 (677)
T ss_dssp             -----------TSEEEEEETTTCCEEEEEETTTTCCSSCBCCSCCEEETTEEEECCBCTTT----CCBCEEEEEETTTCC
T ss_pred             -----------CCEEEEEECCCCCEEeeecCCcCcCcCcccccCcEEECCEEEEEeccccc----CCCCEEEEEECCCCc
Confidence                       2468999998774  87643201000 11222334568888774432111    124679999998764


Q ss_pred             --eEEecc
Q psy14331        201 --WKKIEP  206 (265)
Q Consensus       201 --W~~~~~  206 (265)
                        |+.-..
T Consensus       202 ~~W~~~~~  209 (677)
T 1kb0_A          202 RKWRWFSV  209 (677)
T ss_dssp             EEEEEESS
T ss_pred             EEEEeccC
Confidence              876543

>1qhu_A Protein (hemopexin); beta propeller, HAEM binding and transport, iron metabolism, binding protein; HET: HEM; 2.30A {Oryctolagus cuniculus} SCOP: b.66.1.1 b.66.1.1 PDB: 1qjs_A*

Probab=84.89  E-value=10  Score=32.22  Aligned_cols=59  Identities=12%  Similarity=0.195  Sum_probs=38.7

Q ss_pred             CCEEEEEcCcccCCCccccccCCceeEEEcCCCcEEEEecCCCCCCCcCceEEEECCEEEEEcCccCCCCccccCCceEE
Q psy14331        114 KGQLWMFGGEFSSASESQFHHYKDLWVFRMGEKKWEKIVCKDTPPSRSGHRMIALKKHLVVFGGFHDNLREAKYYNDVHI  193 (265)
Q Consensus       114 ~~~iyv~GG~~~~~~~~~~~~~~~~~~yd~~~~~W~~~~~~~~p~~~~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~v~~  193 (265)
                      ++++|++-|             +..|+||..+.+.....-...|  . .-++...++++|+|-|           +..++
T Consensus       158 ~~~~yfFkG-------------~~yw~yd~~~~~~~~~~w~gi~--~-iDAA~~~~g~~YfFkG-----------~~y~r  210 (460)
T 1qhu_A          158 DEGILFFQG-------------NRKWFWDLTTGTKKERSWPAVG--N-CTSALRWLGRYYCFQG-----------NQFLR  210 (460)
T ss_dssp             SSEEEEEET-------------TEEEEEETTTTEEEEECCTTSC--C-CSEEEEETTEEEEEET-----------TEEEE
T ss_pred             CCeEEEEec-------------ccEEEEecccceeecccCCCCC--c-cchheeeCCceEEEEC-----------CEEEE
Confidence            567888877             3489999988765543222222  2 3456666899999988           35677


Q ss_pred             EEcCCC
Q psy14331        194 FDLETY  199 (265)
Q Consensus       194 y~~~~~  199 (265)
                      ||+.+.
T Consensus       211 fd~~~~  216 (460)
T 1qhu_A          211 FNPVSG  216 (460)
T ss_dssp             ECTTTC
T ss_pred             EcCccC
Confidence            776553

>3k26_A Polycomb protein EED; WD40, structural genomics, NPPSFA, national project on prote structural and functional analysis, structural genomics CON SGC; HET: M3L; 1.58A {Homo sapiens} PDB: 3jzn_A* 3k27_A* 3jpx_A* 3jzg_A* 3jzh_A* 3iiw_A* 3ijc_A* 3iiy_A* 3ij0_A* 3ij1_A* 2qxv_A

Probab=84.53  E-value=8.2  Score=30.54  Aligned_cols=57  Identities=19%  Similarity=0.177  Sum_probs=28.9

Q ss_pred             CEEEEEcCccCCCCccccCCceEEEEcCCCceE--EeccCCCCCCCCCCceEEEeCCCeEEEEcCccc
Q psy14331        170 KHLVVFGGFHDNLREAKYYNDVHIFDLETYAWK--KIEPLGAGPAPRSGCQMAATPDGKILISGGYSK  235 (265)
Q Consensus       170 ~~iyv~GG~~~~~~~~~~~~~v~~y~~~~~~W~--~~~~~~~~p~~~~~~~~~~~~~~~iyi~GG~~~  235 (265)
                      +.+++.|+.+         ..|..||+.+.+-.  .+...........-..+....++++++.|+.+.
T Consensus       299 ~~~l~~~~~d---------g~i~vwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg  357 (366)
T 3k26_A          299 QKMLALGNQV---------GKLYVWDLEVEDPHKAKCTTLTHHKCGAAIRQTSFSRDSSILIAVCDDA  357 (366)
T ss_dssp             SSEEEEECTT---------SCEEEEECCSSSGGGCEEEEECCTTCCSCEEEEEECTTSSEEEEEETTS
T ss_pred             CcEEEEEecC---------CcEEEEECCCCCCccccceEEcccccCCceEEEEeCCCCCeEEEEeCCC
Confidence            6677777653         35888998875421  111211011012223334444677777777643

>1q7f_A NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL repeat, beta-propeller, translation; 1.95A {Drosophila melanogaster} SCOP: b.68.9.1

Probab=83.86  E-value=13  Score=28.53  Aligned_cols=95  Identities=16%  Similarity=0.234  Sum_probs=49.9

Q ss_pred             CCEEEEEcCcccCCCccccccCCceeEEEcCCCcEEEEecCCCCCCCcCceEEEE-CCEEEEEcCccCCCCccccCCceE
Q psy14331        114 KGQLWMFGGEFSSASESQFHHYKDLWVFRMGEKKWEKIVCKDTPPSRSGHRMIAL-KKHLVVFGGFHDNLREAKYYNDVH  192 (265)
Q Consensus       114 ~~~iyv~GG~~~~~~~~~~~~~~~~~~yd~~~~~W~~~~~~~~p~~~~~~~~~~~-~~~iyv~GG~~~~~~~~~~~~~v~  192 (265)
                      +++||+....           ...+.+||+.......+....  ....-.+++.. ++.+|+....         .+.|.
T Consensus       131 ~g~l~v~~~~-----------~~~i~~~~~~g~~~~~~~~~~--~~~~p~~i~~~~~g~l~v~~~~---------~~~i~  188 (286)
T 1q7f_A          131 KGRIIVVECK-----------VMRVIIFDQNGNVLHKFGCSK--HLEFPNGVVVNDKQEIFISDNR---------AHCVK  188 (286)
T ss_dssp             TSCEEEEETT-----------TTEEEEECTTSCEEEEEECTT--TCSSEEEEEECSSSEEEEEEGG---------GTEEE
T ss_pred             CCCEEEEECC-----------CCEEEEEcCCCCEEEEeCCCC--ccCCcEEEEECCCCCEEEEECC---------CCEEE
Confidence            5678887542           256889997665444443211  11111223333 5788886542         35689


Q ss_pred             EEEcCCCceEEeccCCCCCCCCCCceEEEeCCCeEEEEcCc
Q psy14331        193 IFDLETYAWKKIEPLGAGPAPRSGCQMAATPDGKILISGGY  233 (265)
Q Consensus       193 ~y~~~~~~W~~~~~~~~~p~~~~~~~~~~~~~~~iyi~GG~  233 (265)
                      +||+.......+...+..   ..-.+++.-.++.+|+....
T Consensus       189 ~~~~~g~~~~~~~~~g~~---~~p~~i~~d~~G~l~v~~~~  226 (286)
T 1q7f_A          189 VFNYEGQYLRQIGGEGIT---NYPIGVGINSNGEILIADNH  226 (286)
T ss_dssp             EEETTCCEEEEESCTTTS---CSEEEEEECTTCCEEEEECS
T ss_pred             EEcCCCCEEEEEccCCcc---CCCcEEEECCCCCEEEEeCC
Confidence            999876554554432111   11123444346678877643

>3jro_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum, transport, membrane, mRNA transport; 4.00A {Saccharomyces cerevisiae}

Probab=83.68  E-value=9.8  Score=34.39  Aligned_cols=55  Identities=20%  Similarity=0.160  Sum_probs=27.6

Q ss_pred             CEEEEEcCccCCCCccccCCceEEEEcCCC--ceEEeccCCCCCCCCCCceEEEeCC---CeEEEEcCccc
Q psy14331        170 KHLVVFGGFHDNLREAKYYNDVHIFDLETY--AWKKIEPLGAGPAPRSGCQMAATPD---GKILISGGYSK  235 (265)
Q Consensus       170 ~~iyv~GG~~~~~~~~~~~~~v~~y~~~~~--~W~~~~~~~~~p~~~~~~~~~~~~~---~~iyi~GG~~~  235 (265)
                      +.+++.|+.+         ..|..||..+.  .+..+....  .....-.+++...+   +.+++.||.+.
T Consensus       170 ~~~l~sgs~d---------g~I~iwd~~~~~~~~~~~~~~~--~h~~~V~~l~~sp~~~~~~~l~s~s~Dg  229 (753)
T 3jro_A          170 SRKFVTGGAD---------NLVKIWKYNSDAQTYVLESTLE--GHSDWVRDVAWSPTVLLRSYLASVSQDR  229 (753)
T ss_dssp             GCCEEEEETT---------SCEEEEEEETTTTEEEEEEEEC--CCSSCEEEEEECCCCSSSEEEEEEESSS
T ss_pred             CCEEEEEECC---------CeEEEEeccCCcccceeeeeec--CCCCcEEEEEeccCCCCCCEEEEEecCC
Confidence            4566666653         34677777653  444444321  11122233333334   67777777653

>1gen_A Gelatinase A; hydrolase, hemopexin domain, metalloprotease, hydrolase (metalloprotease); 2.15A {Homo sapiens} SCOP: b.66.1.1 PDB: 1rtg_A

Probab=83.20  E-value=13  Score=28.04  Aligned_cols=96  Identities=14%  Similarity=0.236  Sum_probs=49.7

Q ss_pred             CCCEEEEEcCcccCCCccccccCCceeEEEcCCCc---EEEEecCCCCCCC-cCceEEEE--CCEEEEEcCccCCCCccc
Q psy14331        113 DKGQLWMFGGEFSSASESQFHHYKDLWVFRMGEKK---WEKIVCKDTPPSR-SGHRMIAL--KKHLVVFGGFHDNLREAK  186 (265)
Q Consensus       113 ~~~~iyv~GG~~~~~~~~~~~~~~~~~~yd~~~~~---W~~~~~~~~p~~~-~~~~~~~~--~~~iyv~GG~~~~~~~~~  186 (265)
                      .++++|++-|             +..|+|+..+-.   =+.+.....|... .-.++...  ++++|+|-|         
T Consensus        86 ~~~k~yfFkG-------------~~yW~y~~~~~~~gyPk~I~~~g~p~~~~~IDAAf~~~~~g~~YfFkG---------  143 (218)
T 1gen_A           86 QEEKAVFFAG-------------NEYWIYSASTLERGYPKPLTSLGLPPDVQRVDAAFNWSKNKKTYIFAG---------  143 (218)
T ss_dssp             TTTEEEEEET-------------TEEEEEETTEECTTCSEEGGGGTCCTTCCCCSEEEEETTTTEEEEEET---------
T ss_pred             CCCEEEEEeC-------------CEEEEEcCccccCCCCccHhhcCCCCCcCCccEEEEEcCCCeEEEEEC---------
Confidence            3689999977             347888742100   0111111222211 12344443  689999977         


Q ss_pred             cCCceEEEEcCCCceE-----Eec-cCCCCCCCCCCceEEEeC-CCeEEEEcCcc
Q psy14331        187 YYNDVHIFDLETYAWK-----KIE-PLGAGPAPRSGCQMAATP-DGKILISGGYS  234 (265)
Q Consensus       187 ~~~~v~~y~~~~~~W~-----~~~-~~~~~p~~~~~~~~~~~~-~~~iyi~GG~~  234 (265)
                        +..|+||..+++-.     .+. .-..+|.  .-.++.... ++.+|.+-|..
T Consensus       144 --~~ywr~d~~~~~v~~gyPr~i~~~w~g~p~--~idaAf~~~~~g~~YfFkg~~  194 (218)
T 1gen_A          144 --DKFWRYNEVKKKMDPGFPKLIADAWNAIPD--NLDAVVDLQGGGHSYFFKGAY  194 (218)
T ss_dssp             --TEEEEEETTTTEECSSCCEEHHHHSSSCCS--SCSEEEECTTTCEEEEEETTE
T ss_pred             --CEEEEEECccccccCCCCcchhhccCCCCC--CCCEEEEEcCCCcEEEEECCE
Confidence              46889998775422     111 1111222  223444443 47899986653

>1su3_A Interstitial collagenase; prodomain, hemopexin domain, exocite, structural proteomics in europe, spine, structural genomics, hydrolase; HET: EPE; 2.20A {Homo sapiens} SCOP: a.20.1.2 b.66.1.1 d.92.1.11 PDB: 2clt_A 1fbl_A*

Probab=83.16  E-value=11  Score=31.86  Aligned_cols=66  Identities=14%  Similarity=0.231  Sum_probs=41.0

Q ss_pred             CCCEEEEEcCcccCCCccccccCCceeEEEcCCCcEE-----EEe-cC-CCCCCCcCceEEEECCEEEEEcCccCCCCcc
Q psy14331        113 DKGQLWMFGGEFSSASESQFHHYKDLWVFRMGEKKWE-----KIV-CK-DTPPSRSGHRMIALKKHLVVFGGFHDNLREA  185 (265)
Q Consensus       113 ~~~~iyv~GG~~~~~~~~~~~~~~~~~~yd~~~~~W~-----~~~-~~-~~p~~~~~~~~~~~~~~iyv~GG~~~~~~~~  185 (265)
                      .++++|+|-|             +..|+||..+++-.     .+. .. ..|. . -.+++..++++|.|-|        
T Consensus       366 ~~~k~yfFkG-------------~~yw~yd~~~~~~~~gYPk~I~~~fpgip~-~-iDAA~~~~g~~YFFkg--------  422 (450)
T 1su3_A          366 NTGKTYFFVA-------------NKYWRYDEYKRSMDPGYPKMIAHDFPGIGH-K-VDAVFMKDGFFYFFHG--------  422 (450)
T ss_dssp             TTTEEEEEET-------------TEEEEEETTTTEECSSCSEEHHHHSTTSCS-C-CSEEEEETTEEEEEET--------
T ss_pred             CCCeEEEEeC-------------CEEEEEeCCCccccCCCCcchhhcCCCCCC-C-ccEEEEcCCeEEEEeC--------
Confidence            4689999977             45899987654321     111 11 1222 2 2345556899999987        


Q ss_pred             ccCCceEEEEcCCCceEEe
Q psy14331        186 KYYNDVHIFDLETYAWKKI  204 (265)
Q Consensus       186 ~~~~~v~~y~~~~~~W~~~  204 (265)
                         +..|+||..+.+=...
T Consensus       423 ---~~ywr~d~~~~~v~~~  438 (450)
T 1su3_A          423 ---TRQYKFDPKTKRILTL  438 (450)
T ss_dssp             ---TEEEEEETTTTEEEEE
T ss_pred             ---CEEEEEECCcceEecc
Confidence               4678999887765543

>1rwi_B Serine/threonine-protein kinase PKND; beta propeller, structural genomics, PSI, protein structure initiative; 1.80A {Mycobacterium tuberculosis} SCOP: b.68.9.1 PDB: 1rwl_A

Probab=82.11  E-value=14  Score=27.82  Aligned_cols=90  Identities=8%  Similarity=0.004  Sum_probs=46.0

Q ss_pred             CCEEEEEcCcccCCCccccccCCceeEEEcCCCcEEEEecCCCCCCCcCceEEEE-CCEEEEEcCccCCCCccccCCceE
Q psy14331        114 KGQLWMFGGEFSSASESQFHHYKDLWVFRMGEKKWEKIVCKDTPPSRSGHRMIAL-KKHLVVFGGFHDNLREAKYYNDVH  192 (265)
Q Consensus       114 ~~~iyv~GG~~~~~~~~~~~~~~~~~~yd~~~~~W~~~~~~~~p~~~~~~~~~~~-~~~iyv~GG~~~~~~~~~~~~~v~  192 (265)
                      ++.||+... .           ..+.+||+.+.........   ....-..++.. ++.+|+....         ...|.
T Consensus        77 ~g~l~v~~~-~-----------~~i~~~d~~~~~~~~~~~~---~~~~p~~i~~~~~g~l~v~~~~---------~~~i~  132 (270)
T 1rwi_B           77 AGTVYVTDF-N-----------NRVVTLAAGSNNQTVLPFD---GLNYPEGLAVDTQGAVYVADRG---------NNRVV  132 (270)
T ss_dssp             TCCEEEEET-T-----------TEEEEECTTCSCCEECCCC---SCSSEEEEEECTTCCEEEEEGG---------GTEEE
T ss_pred             CCCEEEEcC-C-----------CEEEEEeCCCceEeeeecC---CcCCCcceEECCCCCEEEEECC---------CCEEE
Confidence            567888754 1           3588899877654433211   11112233333 5678886432         24578


Q ss_pred             EEEcCCCceEEeccCCCCCCCCCCceEEEeCCCeEEEEc
Q psy14331        193 IFDLETYAWKKIEPLGAGPAPRSGCQMAATPDGKILISG  231 (265)
Q Consensus       193 ~y~~~~~~W~~~~~~~~~p~~~~~~~~~~~~~~~iyi~G  231 (265)
                      +++..+.........    ....-..++.-.++++|+..
T Consensus       133 ~~~~~~~~~~~~~~~----~~~~p~~i~~~~~g~l~v~~  167 (270)
T 1rwi_B          133 KLAAGSKTQTVLPFT----GLNDPDGVAVDNSGNVYVTD  167 (270)
T ss_dssp             EECTTCCSCEECCCC----SCCSCCCEEECTTCCEEEEE
T ss_pred             EEECCCceeEeeccc----cCCCceeEEEeCCCCEEEEE
Confidence            887666554433221    10111233433456777764

>2z3z_A Dipeptidyl aminopeptidase IV; peptidase family S9, prolyl oligopeptidase family, serine PR proline-specific peptidase, hydrolase; HET: AIO; 1.95A {Porphyromonas gingivalis} PDB: 2z3w_A* 2d5l_A 2eep_A* 2dcm_A*

Probab=81.70  E-value=27  Score=30.84  Aligned_cols=64  Identities=9%  Similarity=0.097  Sum_probs=34.3

Q ss_pred             CceeEEEcCCCcEEEEecCCCCCCCcCceEEEE--CCEEEEEcCccCCCCccccCCceEEEEcCCC-ceEEec
Q psy14331        136 KDLWVFRMGEKKWEKIVCKDTPPSRSGHRMIAL--KKHLVVFGGFHDNLREAKYYNDVHIFDLETY-AWKKIE  205 (265)
Q Consensus       136 ~~~~~yd~~~~~W~~~~~~~~p~~~~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~~v~~y~~~~~-~W~~~~  205 (265)
                      ..++++|+.+++-..+....  ........+..  +++.++++..+...    ....|+.+|+.+. ..+.+.
T Consensus       235 ~~l~~~d~~~~~~~~~~~~~--~~~~~~~~~~~spdg~~l~~~~~~~~~----~~~~v~~~d~~~g~~~~~~~  301 (706)
T 2z3z_A          235 VTVGIYHLATGKTVYLQTGE--PKEKFLTNLSWSPDENILYVAEVNRAQ----NECKVNAYDAETGRFVRTLF  301 (706)
T ss_dssp             EEEEEEETTTTEEEECCCCS--CTTCEEEEEEECTTSSEEEEEEECTTS----CEEEEEEEETTTCCEEEEEE
T ss_pred             eEEEEEECCCCceEeeccCC--CCceeEeeEEEECCCCEEEEEEeCCCC----CeeEEEEEECCCCceeeEEE
Confidence            56889999888755543211  11111122222  45444444433221    1357899999987 666654

>4a2l_A BT_4663, two-component system sensor histidine kinase/RESP; transcription, beta-propeller; HET: PGE PG4 MES 2PE; 2.60A {Bacteroides thetaiotaomicron} PDB: 4a2m_A*

Probab=81.64  E-value=30  Score=31.32  Aligned_cols=93  Identities=13%  Similarity=0.121  Sum_probs=51.0

Q ss_pred             CCCEEEEEcCcccCCCccccccCCceeEEEcCCCcEEEEecC-CCC-CC-CcCceEEEE-CCEEEEEcCccCCCCccccC
Q psy14331        113 DKGQLWMFGGEFSSASESQFHHYKDLWVFRMGEKKWEKIVCK-DTP-PS-RSGHRMIAL-KKHLVVFGGFHDNLREAKYY  188 (265)
Q Consensus       113 ~~~~iyv~GG~~~~~~~~~~~~~~~~~~yd~~~~~W~~~~~~-~~p-~~-~~~~~~~~~-~~~iyv~GG~~~~~~~~~~~  188 (265)
                      .++.|++...             ..+++||+.++++ ..... ..+ .+ ..-.+++.. ++.|++-..           
T Consensus       507 ~~g~lWigt~-------------~Gl~~~~~~~~~~-~~~~~~~~~~l~~~~i~~i~~d~~g~lWigT~-----------  561 (795)
T 4a2l_A          507 SHKRLWIGGE-------------EGLSVFKQEGLDI-QKASILPVSNVTKLFTNCIYEASNGIIWVGTR-----------  561 (795)
T ss_dssp             TTCCEEEEES-------------SCEEEEEEETTEE-EECCCSCSCGGGGSCEEEEEECTTSCEEEEES-----------
T ss_pred             CCCCEEEEeC-------------CceEEEeCCCCeE-EEecCCCCCCCCCCeeEEEEECCCCCEEEEeC-----------
Confidence            3677877543             2388899988887 44321 000 11 111122222 456776331           


Q ss_pred             CceEEEEcCCCceEEeccCCCCCCCCCCceEEEeCCCeEEEEc
Q psy14331        189 NDVHIFDLETYAWKKIEPLGAGPAPRSGCQMAATPDGKILISG  231 (265)
Q Consensus       189 ~~v~~y~~~~~~W~~~~~~~~~p~~~~~~~~~~~~~~~iyi~G  231 (265)
                      ..+++||+.+.+++.......+|.... .+++.-.++.|++.+
T Consensus       562 ~Gl~~~d~~~~~~~~~~~~~gl~~~~i-~~i~~d~~g~lWi~t  603 (795)
T 4a2l_A          562 EGFYCFNEKDKQIKRYNTTNGLPNNVV-YGILEDSFGRLWLST  603 (795)
T ss_dssp             SCEEEEETTTTEEEEECGGGTCSCSCE-EEEEECTTSCEEEEE
T ss_pred             CCceeECCCCCcEEEeCCCCCCchhhe-EEEEECCCCCEEEEc
Confidence            258899999999988765433444322 333333356788765

>3jro_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum, transport, membrane, mRNA transport; 4.00A {Saccharomyces cerevisiae}

Probab=81.61  E-value=22  Score=32.03  Aligned_cols=99  Identities=11%  Similarity=0.088  Sum_probs=46.1

Q ss_pred             CEEEEEcCcccCCCccccccCCceeEEEcCCC--cEEEEecCCCCCCCcCceEEEE-C---CEEEEEcCccCCCCccccC
Q psy14331        115 GQLWMFGGEFSSASESQFHHYKDLWVFRMGEK--KWEKIVCKDTPPSRSGHRMIAL-K---KHLVVFGGFHDNLREAKYY  188 (265)
Q Consensus       115 ~~iyv~GG~~~~~~~~~~~~~~~~~~yd~~~~--~W~~~~~~~~p~~~~~~~~~~~-~---~~iyv~GG~~~~~~~~~~~  188 (265)
                      +.+++.|+.+           ..+..||..++  .+..+..... ....-.+++.. +   +.+++.|+.++        
T Consensus       170 ~~~l~sgs~d-----------g~I~iwd~~~~~~~~~~~~~~~~-h~~~V~~l~~sp~~~~~~~l~s~s~Dg--------  229 (753)
T 3jro_A          170 SRKFVTGGAD-----------NLVKIWKYNSDAQTYVLESTLEG-HSDWVRDVAWSPTVLLRSYLASVSQDR--------  229 (753)
T ss_dssp             GCCEEEEETT-----------SCEEEEEEETTTTEEEEEEEECC-CSSCEEEEEECCCCSSSEEEEEEESSS--------
T ss_pred             CCEEEEEECC-----------CeEEEEeccCCcccceeeeeecC-CCCcEEEEEeccCCCCCCEEEEEecCC--------
Confidence            5566666642           34667776544  4444433321 11111122222 4   67888887643        


Q ss_pred             CceEEEEcCCCc--eEEeccCCCCCCCCCCceEEEeCCCeEEEEcCccc
Q psy14331        189 NDVHIFDLETYA--WKKIEPLGAGPAPRSGCQMAATPDGKILISGGYSK  235 (265)
Q Consensus       189 ~~v~~y~~~~~~--W~~~~~~~~~p~~~~~~~~~~~~~~~iyi~GG~~~  235 (265)
                       .|..||+.+..  +....... ......-.+++...++..++.||.++
T Consensus       230 -~I~iwd~~~~~~~~~~~~~~~-~~~~~~v~~l~~spdg~~l~s~s~Dg  276 (753)
T 3jro_A          230 -TCIIWTQDNEQGPWKKTLLKE-EKFPDVLWRASWSLSGNVLALSGGDN  276 (753)
T ss_dssp             -CEEEEEESSSSSCCBCCBSSS-SCCSSCCCCEEECTTTCCEEEECSSS
T ss_pred             -EEEEecCCCCCCcceeEEecc-CCCCCceEEEEEcCCCCEEEEEcCCC
Confidence             47778877642  22111110 01111222333344667777776543

>3e5z_A Putative gluconolactonase; X-RAY NESG Q9RXN3 gluconolactonase, structural genomics, PSI protein structure initiative; 2.01A {Deinococcus radiodurans}

Probab=81.40  E-value=13  Score=28.67  Aligned_cols=97  Identities=9%  Similarity=0.093  Sum_probs=53.0

Q ss_pred             EEEecCCCEEEEEcCcccCCCccccccCCceeEEEcCCCcEEEEecCCCCCCCcCceEEEE-CCEEEEEcCccCCCCccc
Q psy14331        108 VALSADKGQLWMFGGEFSSASESQFHHYKDLWVFRMGEKKWEKIVCKDTPPSRSGHRMIAL-KKHLVVFGGFHDNLREAK  186 (265)
Q Consensus       108 ~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~~~yd~~~~~W~~~~~~~~p~~~~~~~~~~~-~~~iyv~GG~~~~~~~~~  186 (265)
                      ..+...++.||+++..           ...+++||+.++ .+.....   ... -.+++.. ++.+|+....        
T Consensus        33 ~~~d~~g~~l~~~~~~-----------~~~i~~~~~~~~-~~~~~~~---~~~-~~~l~~~~dg~l~v~~~~--------   88 (296)
T 3e5z_A           33 PVYVPARSAVIFSDVR-----------QNRTWAWSDDGQ-LSPEMHP---SHH-QNGHCLNKQGHLIACSHG--------   88 (296)
T ss_dssp             EEEEGGGTEEEEEEGG-----------GTEEEEEETTSC-EEEEESS---CSS-EEEEEECTTCCEEEEETT--------
T ss_pred             CeEeCCCCEEEEEeCC-----------CCEEEEEECCCC-eEEEECC---CCC-cceeeECCCCcEEEEecC--------
Confidence            3444444558887653           256899999888 5555422   111 1233332 5677775431        


Q ss_pred             cCCceEEEEcCCCceEEeccCCC-CCCCCCCceEEEeCCCeEEEE
Q psy14331        187 YYNDVHIFDLETYAWKKIEPLGA-GPAPRSGCQMAATPDGKILIS  230 (265)
Q Consensus       187 ~~~~v~~y~~~~~~W~~~~~~~~-~p~~~~~~~~~~~~~~~iyi~  230 (265)
                       ...|.+||+.+.+.+.+..... .+..+. ..++.-.++.+|+.
T Consensus        89 -~~~i~~~d~~~g~~~~~~~~~~~~~~~~~-~~i~~d~~G~l~vt  131 (296)
T 3e5z_A           89 -LRRLERQREPGGEWESIADSFEGKKLNSP-NDVCLAPDGSLWFS  131 (296)
T ss_dssp             -TTEEEEECSTTCCEEEEECEETTEECCCC-CCEEECTTSCEEEE
T ss_pred             -CCeEEEEcCCCCcEEEEeeccCCCCCCCC-CCEEECCCCCEEEE
Confidence             2468999998888776643210 111111 23344446778875

>1rwi_B Serine/threonine-protein kinase PKND; beta propeller, structural genomics, PSI, protein structure initiative; 1.80A {Mycobacterium tuberculosis} SCOP: b.68.9.1 PDB: 1rwl_A

Probab=81.03  E-value=16  Score=27.59  Aligned_cols=91  Identities=10%  Similarity=0.067  Sum_probs=46.4

Q ss_pred             CCEEEEEcCcccCCCccccccCCceeEEEcCCCcEEEEecCCCCCCCcCceEEEE-CCEEEEEcCccCCCCccccCCceE
Q psy14331        114 KGQLWMFGGEFSSASESQFHHYKDLWVFRMGEKKWEKIVCKDTPPSRSGHRMIAL-KKHLVVFGGFHDNLREAKYYNDVH  192 (265)
Q Consensus       114 ~~~iyv~GG~~~~~~~~~~~~~~~~~~yd~~~~~W~~~~~~~~p~~~~~~~~~~~-~~~iyv~GG~~~~~~~~~~~~~v~  192 (265)
                      ++.||+....           ...+.+++..+..........   ...-..++.. ++.+|+....         .+.|.
T Consensus       118 ~g~l~v~~~~-----------~~~i~~~~~~~~~~~~~~~~~---~~~p~~i~~~~~g~l~v~~~~---------~~~i~  174 (270)
T 1rwi_B          118 QGAVYVADRG-----------NNRVVKLAAGSKTQTVLPFTG---LNDPDGVAVDNSGNVYVTDTD---------NNRVV  174 (270)
T ss_dssp             TCCEEEEEGG-----------GTEEEEECTTCCSCEECCCCS---CCSCCCEEECTTCCEEEEEGG---------GTEEE
T ss_pred             CCCEEEEECC-----------CCEEEEEECCCceeEeecccc---CCCceeEEEeCCCCEEEEECC---------CCEEE
Confidence            5678887542           245778877665543322111   1112234443 5678886532         24688


Q ss_pred             EEEcCCCceEEeccCCCCCCCCCCceEEEeCCCeEEEEc
Q psy14331        193 IFDLETYAWKKIEPLGAGPAPRSGCQMAATPDGKILISG  231 (265)
Q Consensus       193 ~y~~~~~~W~~~~~~~~~p~~~~~~~~~~~~~~~iyi~G  231 (265)
                      +||+.+..-......   .. ..-.+++.-.++.+|+..
T Consensus       175 ~~~~~~~~~~~~~~~---~~-~~p~~i~~d~~g~l~v~~  209 (270)
T 1rwi_B          175 KLEAESNNQVVLPFT---DI-TAPWGIAVDEAGTVYVTE  209 (270)
T ss_dssp             EECTTTCCEEECCCS---SC-CSEEEEEECTTCCEEEEE
T ss_pred             EEecCCCceEeeccc---CC-CCceEEEECCCCCEEEEE
Confidence            899887654332221   11 111333333355777765

>2pm9_A Protein WEB1, protein transport protein SEC31; beta propeller; 3.30A {Saccharomyces cerevisiae}

Probab=80.89  E-value=11  Score=30.59  Aligned_cols=105  Identities=8%  Similarity=0.091  Sum_probs=48.6

Q ss_pred             EEEecCCCEEEEEcCcccCCCccccccCCceeEEEcCCCcEEEEecCCCCCCCcCceEEEE--CCEEEEEcCccCCCCcc
Q psy14331        108 VALSADKGQLWMFGGEFSSASESQFHHYKDLWVFRMGEKKWEKIVCKDTPPSRSGHRMIAL--KKHLVVFGGFHDNLREA  185 (265)
Q Consensus       108 ~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~~~yd~~~~~W~~~~~~~~p~~~~~~~~~~~--~~~iyv~GG~~~~~~~~  185 (265)
                      +.+...+..+++.|+....        ...+..||..+..- .+..........-.+++..  ++.+++.|+.+      
T Consensus       220 ~~~~~~~~~~l~~~~~d~~--------~~~i~~~d~~~~~~-~~~~~~~~~~~~v~~~~~s~~~~~~l~s~~~d------  284 (416)
T 2pm9_A          220 VEWHPKNSTRVATATGSDN--------DPSILIWDLRNANT-PLQTLNQGHQKGILSLDWCHQDEHLLLSSGRD------  284 (416)
T ss_dssp             EEECSSCTTEEEEEECCSS--------SCCCCEEETTSTTS-CSBCCCSCCSSCEEEEEECSSCSSCEEEEESS------
T ss_pred             EEECCCCCCEEEEEECCCC--------CceEEEEeCCCCCC-CcEEeecCccCceeEEEeCCCCCCeEEEEeCC------
Confidence            3343333457777664321        12578888877531 1111100011111122221  45677777653      


Q ss_pred             ccCCceEEEEcCCCceE-EeccCCCCCCCCCCceEEEeCCC-eEEEEcCccc
Q psy14331        186 KYYNDVHIFDLETYAWK-KIEPLGAGPAPRSGCQMAATPDG-KILISGGYSK  235 (265)
Q Consensus       186 ~~~~~v~~y~~~~~~W~-~~~~~~~~p~~~~~~~~~~~~~~-~iyi~GG~~~  235 (265)
                         ..|..||+.+.+-. .+...   .  ..-..+....++ .+++.|+.+.
T Consensus       285 ---g~v~~wd~~~~~~~~~~~~~---~--~~v~~~~~s~~~~~~l~s~~~d~  328 (416)
T 2pm9_A          285 ---NTVLLWNPESAEQLSQFPAR---G--NWCFKTKFAPEAPDLFACASFDN  328 (416)
T ss_dssp             ---SEEEEECSSSCCEEEEEECS---S--SCCCCEEECTTCTTEEEECCSSS
T ss_pred             ---CCEEEeeCCCCccceeecCC---C--CceEEEEECCCCCCEEEEEecCC
Confidence               35788888775432 22221   1  111233334455 6788877653

>2xbg_A YCF48-like protein; photosynthesis, photosystem II, beta-propeller, assembly FAC; 1.50A {Thermosynechococcus elongatus}

Probab=80.84  E-value=20  Score=28.59  Aligned_cols=158  Identities=12%  Similarity=0.076  Sum_probs=77.1

Q ss_pred             HHHhhcccceEEEeccCCCCCCCceeeEEecCCCEEEEECcEEeCCCceeeCCCcccCceEEEEe----eecCCCC-CCC
Q psy14331         27 IEAEEKRKNKVIEKVVPEPTRRANFSFLAHPDKDQLILFGGEFYDGQKFVFGSPKALDHLILMNL----FVSAPGA-PPP  101 (265)
Q Consensus        27 ~~~~d~~~~~w~~~~~~~p~~r~~~~~~~~~~~~~lyv~GG~~~~~~~~~~~~~~~~~~~~~yd~----w~~~~~~-p~~  101 (265)
                      ++.-...-.+|+.+ . .|....-.++.+. ..+.+|++|-               ...+++-.-    |+..... +.+
T Consensus        17 ~~~s~d~g~~W~~~-~-~~~~~~~~~v~~~-~~~~~~~~G~---------------~g~i~~s~DgG~tW~~~~~~~~~~   78 (327)
T 2xbg_A           17 SAIPALDYNPWEAI-Q-LPTTATILDMSFI-DRHHGWLVGV---------------NATLMETRDGGQTWEPRTLVLDHS   78 (327)
T ss_dssp             -CCCBCSSCCEEEE-E-CSCSSCEEEEEES-SSSCEEEEET---------------TTEEEEESSTTSSCEECCCCCSCC
T ss_pred             eeecCCCCCCceEe-e-cCCCCcEEEEEEC-CCCcEEEEcC---------------CCeEEEeCCCCCCCeECCCCCCCC
Confidence            44444556789874 3 2222222233332 5677888653               123333322    7776432 222


Q ss_pred             ccccceEEEecCCCEEEEEcCcccCCCccccccCCceeEEEcCCCcEEEEecCCCCCCCcCceEEE-ECCEEEEEcCccC
Q psy14331        102 RCSHQMVALSADKGQLWMFGGEFSSASESQFHHYKDLWVFRMGEKKWEKIVCKDTPPSRSGHRMIA-LKKHLVVFGGFHD  180 (265)
Q Consensus       102 r~~~~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~~~yd~~~~~W~~~~~~~~p~~~~~~~~~~-~~~~iyv~GG~~~  180 (265)
                      ......+...  ++.+|++|..            ..+++-+-...+|+.+.... +.+-....++. -++.+|+.|..  
T Consensus        79 ~~~~~~i~~~--~~~~~~~g~~------------g~i~~S~DgG~tW~~~~~~~-~~~~~~~~i~~~~~~~~~~~~~~--  141 (327)
T 2xbg_A           79 DYRFNSVSFQ--GNEGWIVGEP------------PIMLHTTDGGQSWSQIPLDP-KLPGSPRLIKALGNGSAEMITNV--  141 (327)
T ss_dssp             CCEEEEEEEE--TTEEEEEEET------------TEEEEESSTTSSCEECCCCT-TCSSCEEEEEEEETTEEEEEETT--
T ss_pred             CccEEEEEec--CCeEEEEECC------------CeEEEECCCCCCceECcccc-CCCCCeEEEEEECCCCEEEEeCC--
Confidence            2223333343  5788887521            22444333356899986432 11111223333 36788887642  


Q ss_pred             CCCccccCCceEEEEcCCCceEEeccCCCCCCCCCCceEEEeCCCeEEEEc
Q psy14331        181 NLREAKYYNDVHIFDLETYAWKKIEPLGAGPAPRSGCQMAATPDGKILISG  231 (265)
Q Consensus       181 ~~~~~~~~~~v~~y~~~~~~W~~~~~~~~~p~~~~~~~~~~~~~~~iyi~G  231 (265)
                              ..+++-.-.-.+|+.+...    .....+.++...++.++++|
T Consensus       142 --------g~v~~S~DgG~tW~~~~~~----~~~~~~~~~~~~~~~~~~~g  180 (327)
T 2xbg_A          142 --------GAIYRTKDSGKNWQALVQE----AIGVMRNLNRSPSGEYVAVS  180 (327)
T ss_dssp             --------CCEEEESSTTSSEEEEECS----CCCCEEEEEECTTSCEEEEE
T ss_pred             --------ccEEEEcCCCCCCEEeecC----CCcceEEEEEcCCCcEEEEE
Confidence                    2344443345789998762    22233444444456666665

>3c7x_A Matrix metalloproteinase-14; membrane protein interaction, Pro-MMP-2, TIMP-2, metastasis, calcium, cleavage on PAIR of basic residues, hydrolase; 1.70A {Homo sapiens}

Probab=80.73  E-value=15  Score=27.13  Aligned_cols=62  Identities=16%  Similarity=0.274  Sum_probs=37.3

Q ss_pred             CCCEEEEEcCcccCCCccccccCCceeEEEcCCCcEEE-----EecC-CCCCCCcCceEEEE-CC-EEEEEcCccCCCCc
Q psy14331        113 DKGQLWMFGGEFSSASESQFHHYKDLWVFRMGEKKWEK-----IVCK-DTPPSRSGHRMIAL-KK-HLVVFGGFHDNLRE  184 (265)
Q Consensus       113 ~~~~iyv~GG~~~~~~~~~~~~~~~~~~yd~~~~~W~~-----~~~~-~~p~~~~~~~~~~~-~~-~iyv~GG~~~~~~~  184 (265)
                      .++++|++-|             +..++||..+++-..     +... +.|.  .-.++... ++ ++|.|-|       
T Consensus       108 ~~g~~yfFkG-------------~~yw~yd~~~~~v~~gyPk~i~~~~gip~--~idaAf~~~~~~~~YfFkg-------  165 (196)
T 3c7x_A          108 PNGKTYFFRG-------------NKYYRFNEELRAVDSEYPKNIKVWEGIPE--SPRGSFMGSDEVFTYFYKG-------  165 (196)
T ss_dssp             TTTEEEEEET-------------TEEEEEETTTTEECTTCSEEGGGSBTCCS--SCSEEEECTTSSEEEEEET-------
T ss_pred             cCCEEEEEEC-------------CEEEEEeCCcccccCCCCccHHHCCCcCC--CcceeEEecCCCEEEEEEC-------
Confidence            3689999977             347899987653211     1111 2222  22344444 44 8999977       


Q ss_pred             cccCCceEEEEcCCCc
Q psy14331        185 AKYYNDVHIFDLETYA  200 (265)
Q Consensus       185 ~~~~~~v~~y~~~~~~  200 (265)
                          +..|+||..+.+
T Consensus       166 ----~~y~r~d~~~~~  177 (196)
T 3c7x_A          166 ----NKYWKFNNQKLK  177 (196)
T ss_dssp             ----TEEEEEETTTTE
T ss_pred             ----CEEEEEECCcce
Confidence                467899987754

>3ott_A Two-component system sensor histidine kinase; beta-propeller, beta-sandwich, transcription; HET: TBR; 2.30A {Bacteroides thetaiotaomicron} PDB: 3va6_A

Probab=80.67  E-value=32  Score=30.96  Aligned_cols=68  Identities=16%  Similarity=0.158  Sum_probs=38.3

Q ss_pred             CCCEEEEEcCcccCCCccccccCCceeEEEcCCCcEEEEecCCCCCCCcCceEEEECCEEEEEcCccCCCCccccCCceE
Q psy14331        113 DKGQLWMFGGEFSSASESQFHHYKDLWVFRMGEKKWEKIVCKDTPPSRSGHRMIALKKHLVVFGGFHDNLREAKYYNDVH  192 (265)
Q Consensus       113 ~~~~iyv~GG~~~~~~~~~~~~~~~~~~yd~~~~~W~~~~~~~~p~~~~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~v~  192 (265)
                      .++.|++...             .-+.+||+.+++++......+|.. .-.++...++.|++-..           +.+.
T Consensus       526 ~~g~lWigt~-------------~Gl~~~~~~~~~~~~~~~~gl~~~-~i~~i~~~~g~lWi~t~-----------~Gl~  580 (758)
T 3ott_A          526 EDGLLWVGFH-------------GGVMRINPKDESQQSISFGSFSNN-EILSMTCVKNSIWVSTT-----------NGLW  580 (758)
T ss_dssp             TTSCEEEEET-------------TEEEEECC--CCCCBCCCCC---C-CEEEEEEETTEEEEEES-----------SCEE
T ss_pred             CCCCEEEEec-------------CceEEEecCCCceEEecccCCCcc-ceEEEEECCCCEEEECC-----------CCeE
Confidence            4678886432             237889988887665432222322 22333444778877542           4588


Q ss_pred             EEEcCCCceEEec
Q psy14331        193 IFDLETYAWKKIE  205 (265)
Q Consensus       193 ~y~~~~~~W~~~~  205 (265)
                      +||+.+.+.+...
T Consensus       581 ~~~~~~~~~~~~~  593 (758)
T 3ott_A          581 IIDRKTMDARQQN  593 (758)
T ss_dssp             EEETTTCCEEEC-
T ss_pred             EEcCCCceeEEec
Confidence            9999998876543

>3hrp_A Uncharacterized protein; NP_812590.1, structural genomics protein of unknown function structural genomics; HET: MSE; 1.70A {Bacteroides thetaiotaomicron vpi-5482}

Probab=80.56  E-value=23  Score=29.27  Aligned_cols=135  Identities=11%  Similarity=0.040  Sum_probs=71.7

Q ss_pred             HHHHhhcccceEEEeccCCCCCCCceeeEEecCCCEEEEECcEEeCCCceeeCCCcccCceEEEEe---ee--cCCCC-C
Q psy14331         26 DIEAEEKRKNKVIEKVVPEPTRRANFSFLAHPDKDQLILFGGEFYDGQKFVFGSPKALDHLILMNL---FV--SAPGA-P   99 (265)
Q Consensus        26 ~~~~~d~~~~~w~~~~~~~p~~r~~~~~~~~~~~~~lyv~GG~~~~~~~~~~~~~~~~~~~~~yd~---w~--~~~~~-p   99 (265)
                      .+..+|+.+..........   ...+ +++.++++.||+...   .+          ...++++|.   +.  ..... +
T Consensus       153 ~I~~id~~~g~~~~~~~~~---~~~~-ia~~~~g~~l~~~d~---~~----------~~~I~~~d~~~~~~~~~~g~~~~  215 (409)
T 3hrp_A          153 RVRLISVDDNKVTTVHPGF---KGGK-PAVTKDKQRVYSIGW---EG----------THTVYVYMKASGWAPTRIGQLGS  215 (409)
T ss_dssp             EEEEEETTTTEEEEEEETC---CBCB-CEECTTSSEEEEEBS---ST----------TCEEEEEEGGGTTCEEEEEECCT
T ss_pred             cEEEEECCCCEEEEeeccC---CCCc-eeEecCCCcEEEEec---CC----------CceEEEEEcCCCceeEEeeeccc
Confidence            3667777766655432221   2233 556656777887654   11          126788887   21  22111 1


Q ss_pred             -CCccccceEEEecCCCEEEEEcCcccCCCccccccCCceeEEEcCCCcEEEEecCCC-CCCCcC-c-eEEEE--CCEEE
Q psy14331        100 -PPRCSHQMVALSADKGQLWMFGGEFSSASESQFHHYKDLWVFRMGEKKWEKIVCKDT-PPSRSG-H-RMIAL--KKHLV  173 (265)
Q Consensus       100 -~~r~~~~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~~~yd~~~~~W~~~~~~~~-p~~~~~-~-~~~~~--~~~iy  173 (265)
                       .....+.. .++..++.||+.-.            ...++++|+.+.....+..... ...... . .++..  ++.||
T Consensus       216 ~~~~~p~~i-av~p~~g~lyv~d~------------~~~I~~~d~~~~~~~~~~~~~~~g~~~~~P~~~ia~~p~~g~ly  282 (409)
T 3hrp_A          216 TFSGKIGAV-ALDETEEWLYFVDS------------NKNFGRFNVKTQEVTLIKQLELSGSLGTNPGPYLIYYFVDSNFY  282 (409)
T ss_dssp             TSCSCCCBC-EECTTSSEEEEECT------------TCEEEEEETTTCCEEEEEECCCCSCCCCSSCCEEEEETTTTEEE
T ss_pred             hhcCCcEEE-EEeCCCCeEEEEEC------------CCcEEEEECCCCCEEEEecccccCCCCCCccccEEEeCCCCEEE
Confidence             12222333 34444688999422            2469999998887655522110 111122 1 34444  57899


Q ss_pred             EEcCccCCCCccccCCceEEEEcCCC
Q psy14331        174 VFGGFHDNLREAKYYNDVHIFDLETY  199 (265)
Q Consensus       174 v~GG~~~~~~~~~~~~~v~~y~~~~~  199 (265)
                      +....         .+.|+++++...
T Consensus       283 v~d~~---------~~~I~~~~~~g~  299 (409)
T 3hrp_A          283 MSDQN---------LSSVYKITPDGE  299 (409)
T ss_dssp             EEETT---------TTEEEEECTTCC
T ss_pred             EEeCC---------CCEEEEEecCCC
Confidence            87532         356888887654

>1kb0_A Quinohemoprotein alcohol dehydrogenase; beta-propeller fold, cytochrome C, oxidoreductase; HET: TRO HEC PQQ; 1.44A {Comamonas testosteroni} SCOP: a.3.1.6 b.70.1.1

Probab=80.34  E-value=32  Score=30.73  Aligned_cols=70  Identities=11%  Similarity=0.072  Sum_probs=44.1

Q ss_pred             CCEEEEEcCcccCCCccccccCCceeEEEcCCCc--EEEEecCCC---CC---CCcCceEEEECCEEEEEcCccCCCCcc
Q psy14331        114 KGQLWMFGGEFSSASESQFHHYKDLWVFRMGEKK--WEKIVCKDT---PP---SRSGHRMIALKKHLVVFGGFHDNLREA  185 (265)
Q Consensus       114 ~~~iyv~GG~~~~~~~~~~~~~~~~~~yd~~~~~--W~~~~~~~~---p~---~~~~~~~~~~~~~iyv~GG~~~~~~~~  185 (265)
                      ++.||+....            +.++.+|..+++  |+.-.....   +.   .....+.++.++.||+...        
T Consensus        77 ~g~vyv~~~~------------~~v~AlD~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~a~~~~~v~v~~~--------  136 (677)
T 1kb0_A           77 DGIMYVSASW------------SVVHAIDTRTGNRIWTYDPQIDRSTGFKGCCDVVNRGVALWKGKVYVGAW--------  136 (677)
T ss_dssp             TTEEEEECGG------------GCEEEEETTTTEEEEEECCCCCGGGGGGSSSCSCCCCCEEETTEEEEECT--------
T ss_pred             CCEEEEECCC------------CeEEEEECCCCcEEEEEcCCCCccccccccccCCCCCceEECCEEEEEcC--------
Confidence            8999998652            458899988764  876432210   00   0112345566888888532        


Q ss_pred             ccCCceEEEEcCCC--ceEEec
Q psy14331        186 KYYNDVHIFDLETY--AWKKIE  205 (265)
Q Consensus       186 ~~~~~v~~y~~~~~--~W~~~~  205 (265)
                        -..|+.+|..+.  .|+.-.
T Consensus       137 --dg~l~alD~~tG~~~W~~~~  156 (677)
T 1kb0_A          137 --DGRLIALDAATGKEVWHQNT  156 (677)
T ss_dssp             --TSEEEEEETTTCCEEEEEET
T ss_pred             --CCEEEEEECCCCCEEeeecC
Confidence              246999999875  487654

>4ery_A WD repeat-containing protein 5; WD40, WIN motif, beta propeller, 3-10 helix, lysine methyltransferase, RBBP5, ASH2L, core complex; 1.30A {Homo sapiens} PDB: 2h6k_A* 2h68_A* 2h6q_A* 3eg6_A 4erq_A 2h6n_A 4erz_A 4es0_A 4esg_A 4ewr_A 2gnq_A 2xl2_A 2xl3_A 3uvk_A* 3psl_A* 3uvl_A 3uvm_A 3uvn_A 3uvo_A 2h14_A ...

Probab=80.29  E-value=18  Score=27.97  Aligned_cols=98  Identities=11%  Similarity=0.093  Sum_probs=47.2

Q ss_pred             CCEEEEEcCcccCCCccccccCCceeEEEcCCCcEEEEecCCCCCCCcCceEEEE--CCEEEEEcCccCCCCccccCCce
Q psy14331        114 KGQLWMFGGEFSSASESQFHHYKDLWVFRMGEKKWEKIVCKDTPPSRSGHRMIAL--KKHLVVFGGFHDNLREAKYYNDV  191 (265)
Q Consensus       114 ~~~iyv~GG~~~~~~~~~~~~~~~~~~yd~~~~~W~~~~~~~~p~~~~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~~v  191 (265)
                      ++.+++.|+.+           ..+..||+.+.+-...-...   ..........  ++..++.|+.+         ..+
T Consensus       160 ~~~~l~~~~~d-----------~~i~~wd~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~l~~~~~d---------~~i  216 (312)
T 4ery_A          160 DGSLIVSSSYD-----------GLCRIWDTASGQCLKTLIDD---DNPPVSFVKFSPNGKYILAATLD---------NTL  216 (312)
T ss_dssp             TSSEEEEEETT-----------SCEEEEETTTCCEEEEECCS---SCCCEEEEEECTTSSEEEEEETT---------TEE
T ss_pred             CCCEEEEEeCC-----------CcEEEEECCCCceeeEEecc---CCCceEEEEECCCCCEEEEEcCC---------CeE
Confidence            56666776642           45888998877643322111   1111122222  45566666542         458


Q ss_pred             EEEEcCCCceEEeccCCCCCCCCCCceEEEeCCCeEEEEcCccc
Q psy14331        192 HIFDLETYAWKKIEPLGAGPAPRSGCQMAATPDGKILISGGYSK  235 (265)
Q Consensus       192 ~~y~~~~~~W~~~~~~~~~p~~~~~~~~~~~~~~~iyi~GG~~~  235 (265)
                      ..||..+.+-...-... ..............++.+++.|+.+.
T Consensus       217 ~iwd~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~l~sg~~dg  259 (312)
T 4ery_A          217 KLWDYSKGKCLKTYTGH-KNEKYCIFANFSVTGGKWIVSGSEDN  259 (312)
T ss_dssp             EEEETTTTEEEEEECSS-CCSSSCCCEEEECSSSCEEEECCTTS
T ss_pred             EEEECCCCcEEEEEEec-CCceEEEEEEEEeCCCcEEEEECCCC
Confidence            88898876533222110 01111112222333566777777654

>2aq5_A Coronin-1A; WD40 repeat, 7-bladed beta-propeller, structural protein; HET: CME; 1.75A {Mus musculus} PDB: 2b4e_A

Probab=80.07  E-value=18  Score=29.36  Aligned_cols=73  Identities=11%  Similarity=0.036  Sum_probs=36.9

Q ss_pred             CCEEEEEcCcccCCCccccccCCceeEEEcCCCcE--EEEecCCCCCCCcCceEEEE--CCEEEEEcCccCCCCccccCC
Q psy14331        114 KGQLWMFGGEFSSASESQFHHYKDLWVFRMGEKKW--EKIVCKDTPPSRSGHRMIAL--KKHLVVFGGFHDNLREAKYYN  189 (265)
Q Consensus       114 ~~~iyv~GG~~~~~~~~~~~~~~~~~~yd~~~~~W--~~~~~~~~p~~~~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~  189 (265)
                      ++.+++.|.....        -..+..||..+..-  .... ..  ......+++..  ++.+++.|+.+         .
T Consensus       231 ~~~~l~~g~~~~~--------d~~i~iwd~~~~~~~~~~~~-~~--~~~~v~~~~~s~~~~~l~~~g~~d---------g  290 (402)
T 2aq5_A          231 EGKILTTGFSRMS--------ERQVALWDTKHLEEPLSLQE-LD--TSSGVLLPFFDPDTNIVYLCGKGD---------S  290 (402)
T ss_dssp             TTEEEEEEECTTC--------CEEEEEEETTBCSSCSEEEE-CC--CCSSCEEEEEETTTTEEEEEETTC---------S
T ss_pred             CCcEEEEeccCCC--------CceEEEEcCccccCCceEEe-cc--CCCceeEEEEcCCCCEEEEEEcCC---------C
Confidence            6777777631111        24688899876532  1111 11  11112222222  34666666543         3


Q ss_pred             ceEEEEcCCCc--eEEecc
Q psy14331        190 DVHIFDLETYA--WKKIEP  206 (265)
Q Consensus       190 ~v~~y~~~~~~--W~~~~~  206 (265)
                      .|..||+.+.+  ...+..
T Consensus       291 ~i~i~d~~~~~~~~~~l~~  309 (402)
T 2aq5_A          291 SIRYFEITSEAPFLHYLSM  309 (402)
T ss_dssp             CEEEEEECSSTTCEEEEEE
T ss_pred             eEEEEEecCCCcceEeecc
Confidence            57788887765  444444

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	265
d1zgka1	288	b.68.11.1 (A:322-609) Kelch-like ECH-associated pr	5e-09
d1zgka1	288	b.68.11.1 (A:322-609) Kelch-like ECH-associated pr	1e-05
d1zgka1	288	b.68.11.1 (A:322-609) Kelch-like ECH-associated pr	0.001
d1zgka1	288	b.68.11.1 (A:322-609) Kelch-like ECH-associated pr	0.003
d1k3ia3	387	b.69.1.1 (A:151-537) Galactose oxidase, central do	3e-08

>d1zgka1 b.68.11.1 (A:322-609) Kelch-like ECH-associated protein 1, KEAP1 {Human (Homo sapiens) [TaxId: 9606]} Length = 288

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Kelch motif
family: Kelch motif
domain: Kelch-like ECH-associated protein 1, KEAP1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 53.8 bits (127), Expect = 5e-09
 Identities = 17/124 (13%), Positives = 35/124 (28%), Gaps = 15/124 (12%)

Query: 99  PPPRCSHQMVALSADKGQLWMFGGEFSSASESQFHHYKDLWVFRMGEKKWEKIVCKDTPP 158
                      +      ++  GG       +    Y                       
Sbjct: 180 TAMNTIRSGAGVCVLHNCIYAAGGYDGQDQLNSVERYDVET--------ETWTFVAPMKH 231

Query: 159 SRSGHRMIALKKHLVVFGGFHDNLREAKYYNDVHIFDLETYAWKKIEPLGAGPAPRSGCQ 218
            RS   +   +  + V GG+  +     + + V  +D +T  W ++  +    + RSG  
Sbjct: 232 RRSALGITVHQGRIYVLGGYDGH----TFLDSVECYDPDTDTWSEVTRM---TSGRSGVG 284

Query: 219 MAAT 222
           +A T
Sbjct: 285 VAVT 288

>d1zgka1 b.68.11.1 (A:322-609) Kelch-like ECH-associated protein 1, KEAP1 {Human (Homo sapiens) [TaxId: 9606]} Length = 288

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Kelch motif
family: Kelch motif
domain: Kelch-like ECH-associated protein 1, KEAP1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 43.4 bits (100), Expect = 1e-05
 Identities = 11/66 (16%), Positives = 23/66 (34%), Gaps = 9/66 (13%)

Query: 168 LKKHLVVFGGFHDNLREAKYYNDVHIFDLETYAWKKIEPLGAGPAPRSGCQMAATPDGKI 227
           + + +   GG+       +  + +  ++     W ++  L     PRSG        G +
Sbjct: 3   VGRLIYTAGGYFR-----QSLSYLEAYNPSNGTWLRLADL---QVPRSGLAGCVV-GGLL 53

Query: 228 LISGGY 233
              GG 
Sbjct: 54  YAVGGR 59

>d1zgka1 b.68.11.1 (A:322-609) Kelch-like ECH-associated protein 1, KEAP1 {Human (Homo sapiens) [TaxId: 9606]} Length = 288

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Kelch motif
family: Kelch motif
domain: Kelch-like ECH-associated protein 1, KEAP1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 37.6 bits (85), Expect = 0.001
 Identities = 29/148 (19%), Positives = 50/148 (33%), Gaps = 16/148 (10%)

Query: 118 WMFGGEFSSASESQFHHYKDLWVFRMGEKKWEKIVCKDTPPSRSGHRMIALKKHLVVFGG 177
           +  GG          +       +     +W  I   +T  S +G  ++     +   GG
Sbjct: 152 YAVGGF------DGTNRLNSAECYYPERNEWRMITAMNTIRSGAGVCVL--HNCIYAAGG 203

Query: 178 FHDNLREAKYYNDVHIFDLETYAWKKIEPLGAGPAPRSGCQMAATPDGKILISGGYSKQS 237
           +          N V  +D+ET  W  + P       RS   +     G+I + GGY   +
Sbjct: 204 YDGQ----DQLNSVERYDVETETWTFVAP---MKHRRSALGITV-HQGRIYVLGGYDGHT 255

Query: 238 VKKDVDKGIVHTDTFLLTPDSKTLRSCL 265
               V+     TDT+       + RS +
Sbjct: 256 FLDSVECYDPDTDTWSEVTRMTSGRSGV 283

>d1zgka1 b.68.11.1 (A:322-609) Kelch-like ECH-associated protein 1, KEAP1 {Human (Homo sapiens) [TaxId: 9606]} Length = 288

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Kelch motif
family: Kelch motif
domain: Kelch-like ECH-associated protein 1, KEAP1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 35.7 bits (80), Expect = 0.003
 Identities = 14/85 (16%), Positives = 28/85 (32%), Gaps = 9/85 (10%)

Query: 117 LWMFGGEFSSASESQFHHYKDLWVFRMGEKKWEKIVCKDTPPSRSGHRMIALKKHLVVFG 176
           ++  GG F  +          L  +      W ++   D    RSG     +   L   G
Sbjct: 7   IYTAGGYFRQSL-------SYLEAYNPSNGTWLRL--ADLQVPRSGLAGCVVGGLLYAVG 57

Query: 177 GFHDNLREAKYYNDVHIFDLETYAW 201
           G +++       + +  ++  T  W
Sbjct: 58  GRNNSPDGNTDSSALDCYNPMTNQW 82

>d1k3ia3 b.69.1.1 (A:151-537) Galactose oxidase, central domain {Fungi (Fusarium sp.) [TaxId: 29916]} Length = 387

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Galactose oxidase, central domain
family: Galactose oxidase, central domain
domain: Galactose oxidase, central domain
species: Fungi (Fusarium sp.) [TaxId: 29916]

 Score = 51.4 bits (121), Expect = 3e-08
 Identities = 28/168 (16%), Positives = 49/168 (29%), Gaps = 7/168 (4%)

Query: 94  SAPGAPPPRCSHQMVALSADKGQLWMFGGEFSSASESQFHHYKDLWVFRMGEKKWEKIVC 153
           S  G  P       V   A KG++  FGG           +   + +   G         
Sbjct: 223 SNRGVAPDAMCGNAVMYDAVKGKILTFGGSPDYQDSDATTNAHIITLGEPGTSPNTVFAS 282

Query: 154 KDTPPSRSGHRMIALKK-HLVVFGGFHDN--LREAKYYNDVHIFDLETYAWKKIEPLGAG 210
                +R+ H  + L      + GG        ++       I+  E   + K  P    
Sbjct: 283 NGLYFARTFHTSVVLPDGSTFITGGQRRGIPFEDSTPVFTPEIYVPEQDTFYKQNPN--- 339

Query: 211 PAPRSGCQMAA-TPDGKILISGGYSKQSVKKDVDKGIVHTDTFLLTPD 257
              R    ++   PDG++   GG        +     + T  +L   +
Sbjct: 340 SIVRVYHSISLLLPDGRVFNGGGGLCGDCTTNHFDAQIFTPNYLYNSN 387

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	265
d1zgka1	288	Kelch-like ECH-associated protein 1, KEAP1 {Human	100.0
d1zgka1	288	Kelch-like ECH-associated protein 1, KEAP1 {Human	99.94
d1k3ia3	387	Galactose oxidase, central domain {Fungi (Fusarium	99.89
d1k3ia3	387	Galactose oxidase, central domain {Fungi (Fusarium	99.89
d1su3a2	195	Collagenase (MMP1), C-terminal domain {Human (Homo	95.77
d1pexa_	192	Collagenase-3 (MMP-13), C-terminal domain {Human (	95.42
d1pexa_	192	Collagenase-3 (MMP-13), C-terminal domain {Human (	94.53
d1itva_	195	Gelatinase B (MMP-9) {Human (Homo sapiens) [TaxId:	94.3
d1su3a2	195	Collagenase (MMP1), C-terminal domain {Human (Homo	93.78
d1qhua1	192	Hemopexin {Rabbit (Oryctolagus cuniculus) [TaxId:	92.32
d1qksa2	432	C-terminal (heme d1) domain of cytochrome cd1-nitr	92.07
d1gena_	200	Gelatinase A (MMP-2), C-terminal domain {Human (Ho	91.21
d1jmxb_	346	Quinohemoprotein amine dehydrogenase B chain {Pseu	91.14
d1nr0a2	299	Actin interacting protein 1 {Nematode (Caenorhabdi	91.04
d1itva_	195	Gelatinase B (MMP-9) {Human (Homo sapiens) [TaxId:	90.68
d1nr0a2	299	Actin interacting protein 1 {Nematode (Caenorhabdi	89.88
d1k32a3	360	Tricorn protease domain 2 {Archaeon Thermoplasma a	89.33
d1l0qa2	301	Surface layer protein {Archaeon Methanosarcina maz	89.19
d1qhua1	192	Hemopexin {Rabbit (Oryctolagus cuniculus) [TaxId:	89.11
d1k8kc_	371	Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taur	88.76
d1kv9a2	560	Quinoprotein alcohol dehydrogenase, N-terminal dom	88.35
d1gena_	200	Gelatinase A (MMP-2), C-terminal domain {Human (Ho	88.07
d1kb0a2	573	Quinoprotein alcohol dehydrogenase, N-terminal dom	87.95
d1nr0a1	311	Actin interacting protein 1 {Nematode (Caenorhabdi	87.6
d1kb0a2	573	Quinoprotein alcohol dehydrogenase, N-terminal dom	87.5
d1pbyb_	337	Quinohemoprotein amine dehydrogenase B chain {Para	87.47
d2ovrb2	342	F-box/WD repeat-containing protein 7, FBXW7 {Human	87.34
d1pgua1	325	Actin interacting protein 1 {Baker's yeast (Saccha	82.41
d1q7fa_	279	Brain tumor cg10719-pa {Fruit fly (Drosophila mela	81.4
d1kv9a2	560	Quinoprotein alcohol dehydrogenase, N-terminal dom	80.9
d1k8kc_	371	Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taur	80.62

>d1zgka1 b.68.11.1 (A:322-609) Kelch-like ECH-associated protein 1, KEAP1 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Kelch motif
family: Kelch motif
domain: Kelch-like ECH-associated protein 1, KEAP1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=1.6e-32  Score=221.02  Aligned_cols=212  Identities=18%  Similarity=0.279  Sum_probs=171.7

Q ss_pred             HHHHHHHHhhcccceEEEeccCCCCCCCceeeEEecCCCEEEEECcEEeCCCceeeCCCcccCceEEEEe----eecCCC
Q psy14331         22 KIVRDIEAEEKRKNKVIEKVVPEPTRRANFSFLAHPDKDQLILFGGEFYDGQKFVFGSPKALDHLILMNL----FVSAPG   97 (265)
Q Consensus        22 ~~~~~~~~~d~~~~~w~~~~~~~p~~r~~~~~~~~~~~~~lyv~GG~~~~~~~~~~~~~~~~~~~~~yd~----w~~~~~   97 (265)
                      +.++.++.||+.+++|.. .+++|.+|.+|+++++  +++|||+||..........     ++++++||+    |...++
T Consensus        16 ~~~~~~~~yd~~t~~W~~-~~~~p~~R~~~~~~~~--~~~iyv~GG~~~~~~~~~~-----~~~~~~yd~~~~~w~~~~~   87 (288)
T d1zgka1          16 QSLSYLEAYNPSNGTWLR-LADLQVPRSGLAGCVV--GGLLYAVGGRNNSPDGNTD-----SSALDCYNPMTNQWSPCAP   87 (288)
T ss_dssp             SBCCCEEEEETTTTEEEE-CCCCSSCCBSCEEEEE--TTEEEEECCEEEETTEEEE-----CCCEEEEETTTTEEEECCC
T ss_pred             CCCceEEEEECCCCeEEE-CCCCCCccceeEEEEE--CCEEEEEeCcccCCCCccc-----cchhhhccccccccccccc
Confidence            356788999999999999 7889999999999987  9999999997544433333     789999999    999999


Q ss_pred             CCCCccccceEEEecCCCEEEEEcCcccCCCcc-----------------------------------------ccccCC
Q psy14331         98 APPPRCSHQMVALSADKGQLWMFGGEFSSASES-----------------------------------------QFHHYK  136 (265)
Q Consensus        98 ~p~~r~~~~~~~~~~~~~~iyv~GG~~~~~~~~-----------------------------------------~~~~~~  136 (265)
                      +|.+|..|+++.+   +++||++||........                                         ......
T Consensus        88 ~p~~r~~~~~~~~---~~~i~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~GG~~~~~~~~  164 (288)
T d1zgka1          88 MSVPRNRIGVGVI---DGHIYAVGGSHGCIHHNSVERYEPERDEWHLVAPMLTRRIGVGVAVLNRLLYAVGGFDGTNRLN  164 (288)
T ss_dssp             CSSCCBTCEEEEE---TTEEEEECCEETTEECCCEEEEETTTTEEEECCCCSSCCBSCEEEEETTEEEEECCBCSSCBCC
T ss_pred             ccceecceecccc---ceeeEEecceecccccceeeeeccccCccccccccccccccceeeeeeecceEecCcccccccc
Confidence            9999999999988   89999999863321110                                         011246


Q ss_pred             ceeEEEcCCCcEEEEecCCCCCCCcCceEEEECCEEEEEcCccCCCCccccCCceEEEEcCCCceEEeccCCCCCCCCCC
Q psy14331        137 DLWVFRMGEKKWEKIVCKDTPPSRSGHRMIALKKHLVVFGGFHDNLREAKYYNDVHIFDLETYAWKKIEPLGAGPAPRSG  216 (265)
Q Consensus       137 ~~~~yd~~~~~W~~~~~~~~p~~~~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~v~~y~~~~~~W~~~~~~~~~p~~~~~  216 (265)
                      +++.||+.+++|...+..  +.++..++++..+++|+++||.+..    ...++.+.||+.+++|+.+..   .|.+|..
T Consensus       165 ~~~~~d~~~~~~~~~~~~--~~~~~~~~~~~~~~~i~i~GG~~~~----~~~~~~~~~~~~~~~~~~~~~---~p~~r~~  235 (288)
T d1zgka1         165 SAECYYPERNEWRMITAM--NTIRSGAGVCVLHNCIYAAGGYDGQ----DQLNSVERYDVETETWTFVAP---MKHRRSA  235 (288)
T ss_dssp             CEEEEETTTTEEEECCCC--SSCCBSCEEEEETTEEEEECCBCSS----SBCCCEEEEETTTTEEEECCC---CSSCCBS
T ss_pred             eEEEeecccccccccccc--ccccccccccceeeeEEEecCcccc----ccccceeeeeecceeeecccC---ccCcccc
Confidence            678888888888877654  4678888999999999999998665    347899999999999999987   5889999


Q ss_pred             ceEEEeCCCeEEEEcCccccccccccccceeeceEEEEecCcccccc
Q psy14331        217 CQMAATPDGKILISGGYSKQSVKKDVDKGIVHTDTFLLTPDSKTLRS  263 (265)
Q Consensus       217 ~~~~~~~~~~iyi~GG~~~~~~~~~~~~~~~~~~~w~~~~~~~~w~~  263 (265)
                      |+++.+ +++|||+||.+...         ..+++|+||+.+++|+.
T Consensus       236 ~~~~~~-~~~l~v~GG~~~~~---------~~~~v~~yd~~~~~W~~  272 (288)
T d1zgka1         236 LGITVH-QGRIYVLGGYDGHT---------FLDSVECYDPDTDTWSE  272 (288)
T ss_dssp             CEEEEE-TTEEEEECCBCSSC---------BCCEEEEEETTTTEEEE
T ss_pred             eEEEEE-CCEEEEEecCCCCe---------ecceEEEEECCCCEEEE
Confidence            998877 89999999987654         45567778887777764

>d1zgka1 b.68.11.1 (A:322-609) Kelch-like ECH-associated protein 1, KEAP1 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Kelch motif
family: Kelch motif
domain: Kelch-like ECH-associated protein 1, KEAP1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.94  E-value=6.2e-26  Score=182.12  Aligned_cols=171  Identities=19%  Similarity=0.250  Sum_probs=140.6

Q ss_pred             CCCEEEEECcEEeCCCceeeCCCcccCceEEEEe----eecCCCCCCCccccceEEEecCCCEEEEEcCcccCCCccccc
Q psy14331         58 DKDQLILFGGEFYDGQKFVFGSPKALDHLILMNL----FVSAPGAPPPRCSHQMVALSADKGQLWMFGGEFSSASESQFH  133 (265)
Q Consensus        58 ~~~~lyv~GG~~~~~~~~~~~~~~~~~~~~~yd~----w~~~~~~p~~r~~~~~~~~~~~~~~iyv~GG~~~~~~~~~~~  133 (265)
                      .++.||||||.  ....        ++++++||+    |..++++|.+|..|+++++   +++|||+||........  .
T Consensus         3 ~g~~iyv~GG~--~~~~--------~~~~~~yd~~t~~W~~~~~~p~~R~~~~~~~~---~~~iyv~GG~~~~~~~~--~   67 (288)
T d1zgka1           3 VGRLIYTAGGY--FRQS--------LSYLEAYNPSNGTWLRLADLQVPRSGLAGCVV---GGLLYAVGGRNNSPDGN--T   67 (288)
T ss_dssp             CCCCEEEECCB--SSSB--------CCCEEEEETTTTEEEECCCCSSCCBSCEEEEE---TTEEEEECCEEEETTEE--E
T ss_pred             cCCEEEEECCc--CCCC--------CceEEEEECCCCeEEECCCCCCccceeEEEEE---CCEEEEEeCcccCCCCc--c
Confidence            48899999995  3222        789999999    9999999999999999988   89999999975332211  3


Q ss_pred             cCCceeEEEcCCCcEEEEecCCCCCCCcCceEEEECCEEEEEcCccCCCCccccCCceEEEEcCCCceEEeccCCCCCCC
Q psy14331        134 HYKDLWVFRMGEKKWEKIVCKDTPPSRSGHRMIALKKHLVVFGGFHDNLREAKYYNDVHIFDLETYAWKKIEPLGAGPAP  213 (265)
Q Consensus       134 ~~~~~~~yd~~~~~W~~~~~~~~p~~~~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~v~~y~~~~~~W~~~~~~~~~p~~  213 (265)
                      .++++++||+.+++|+.++++  |.+|..|+++++++++|++||....    ...++.+.||+.++.|.....   .+..
T Consensus        68 ~~~~~~~yd~~~~~w~~~~~~--p~~r~~~~~~~~~~~i~~~gg~~~~----~~~~~~~~~~~~~~~~~~~~~---~~~~  138 (288)
T d1zgka1          68 DSSALDCYNPMTNQWSPCAPM--SVPRNRIGVGVIDGHIYAVGGSHGC----IHHNSVERYEPERDEWHLVAP---MLTR  138 (288)
T ss_dssp             ECCCEEEEETTTTEEEECCCC--SSCCBTCEEEEETTEEEEECCEETT----EECCCEEEEETTTTEEEECCC---CSSC
T ss_pred             ccchhhhcccccccccccccc--cceecceeccccceeeEEecceecc----cccceeeeeccccCccccccc---cccc
Confidence            478999999999999998876  5899999999999999999998665    447889999999999998887   4778


Q ss_pred             CCCceEEEeCCCeEEEEcCccccccccccccceeeceEEEEecCccccc
Q psy14331        214 RSGCQMAATPDGKILISGGYSKQSVKKDVDKGIVHTDTFLLTPDSKTLR  262 (265)
Q Consensus       214 ~~~~~~~~~~~~~iyi~GG~~~~~~~~~~~~~~~~~~~w~~~~~~~~w~  262 (265)
                      |..|+++.. +++++++||.....         ...+++.||+....|.
T Consensus       139 r~~~~~~~~-~~~~~~~GG~~~~~---------~~~~~~~~d~~~~~~~  177 (288)
T d1zgka1         139 RIGVGVAVL-NRLLYAVGGFDGTN---------RLNSAECYYPERNEWR  177 (288)
T ss_dssp             CBSCEEEEE-TTEEEEECCBCSSC---------BCCCEEEEETTTTEEE
T ss_pred             cccceeeee-eecceEecCccccc---------ccceEEEeeccccccc
Confidence            999998777 89999999987554         3445666666666664

>d1k3ia3 b.69.1.1 (A:151-537) Galactose oxidase, central domain {Fungi (Fusarium sp.) [TaxId: 29916]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Galactose oxidase, central domain
family: Galactose oxidase, central domain
domain: Galactose oxidase, central domain
species: Fungi (Fusarium sp.) [TaxId: 29916]

Probab=99.89  E-value=3e-22  Score=166.80  Aligned_cols=153  Identities=10%  Similarity=0.098  Sum_probs=109.3

Q ss_pred             cccceEEEeccCCCCCCCceeeEEecCCCEEEEECcEEeCCCceeeCCCcccCceEEEEe----eecCCCCCCCccccce
Q psy14331         32 KRKNKVIEKVVPEPTRRANFSFLAHPDKDQLILFGGEFYDGQKFVFGSPKALDHLILMNL----FVSAPGAPPPRCSHQM  107 (265)
Q Consensus        32 ~~~~~w~~~~~~~p~~r~~~~~~~~~~~~~lyv~GG~~~~~~~~~~~~~~~~~~~~~yd~----w~~~~~~p~~r~~~~~  107 (265)
                      |...+|+. ..++|..+..++++  +.+++||+|||........   ....+..+++||+    |...+.++.+|..+++
T Consensus         6 p~~g~W~~-~~~~p~~~~~~a~~--~~~gkv~v~GG~~~~~~~~---~~~~~~~~~~yd~~t~~w~~~~~~~~~~~~~~~   79 (387)
T d1k3ia3           6 PGLGRWGP-TIDLPIVPAAAAIE--PTSGRVLMWSSYRNDAFGG---SPGGITLTSSWDPSTGIVSDRTVTVTKHDMFCP   79 (387)
T ss_dssp             TTSCEEEE-EEECSSCCSEEEEE--TTTTEEEEEEECCCTTTCS---CCCSEEEEEEECTTTCCBCCCEEEECSCCCSSC
T ss_pred             CCCCccCC-cCCCCccccEEEEE--eeCCEEEEEEeecCcccCC---CCCceeEEEEEECCCCcEeecCCCCCCccccee
Confidence            56788988 66777776644433  3689999999953221111   0111446789999    8887777777765544


Q ss_pred             EEEecCCCEEEEEcCcccCCCccccccCCceeEEEcCCCcEEEEecCCCCCCCcCceEEEE-CCEEEEEcCccCCCCccc
Q psy14331        108 VALSADKGQLWMFGGEFSSASESQFHHYKDLWVFRMGEKKWEKIVCKDTPPSRSGHRMIAL-KKHLVVFGGFHDNLREAK  186 (265)
Q Consensus       108 ~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~~~yd~~~~~W~~~~~~~~p~~~~~~~~~~~-~~~iyv~GG~~~~~~~~~  186 (265)
                      ......+++||++||..          .+++++||+.+++|..++.+  |.+|..|+++.+ ++++|++||.....   .
T Consensus        80 ~~~~~~~g~i~v~Gg~~----------~~~~~~yd~~~~~w~~~~~~--~~~r~~~~~~~~~dG~v~v~GG~~~~~---~  144 (387)
T d1k3ia3          80 GISMDGNGQIVVTGGND----------AKKTSLYDSSSDSWIPGPDM--QVARGYQSSATMSDGRVFTIGGSWSGG---V  144 (387)
T ss_dssp             EEEECTTSCEEEECSSS----------TTCEEEEEGGGTEEEECCCC--SSCCSSCEEEECTTSCEEEECCCCCSS---S
T ss_pred             EEEEecCCcEEEeecCC----------CcceeEecCccCcccccccc--cccccccceeeecCCceeeeccccccc---c
Confidence            33334589999999864          35689999999999998766  588988988887 67999999975443   3


Q ss_pred             cCCceEEEEcCCCceEEec
Q psy14331        187 YYNDVHIFDLETYAWKKIE  205 (265)
Q Consensus       187 ~~~~v~~y~~~~~~W~~~~  205 (265)
                      ..+++++||+.+++|+.+.
T Consensus       145 ~~~~v~~yd~~~~~W~~~~  163 (387)
T d1k3ia3         145 FEKNGEVYSPSSKTWTSLP  163 (387)
T ss_dssp             CCCCEEEEETTTTEEEEET
T ss_pred             ccceeeeecCCCCceeecC
Confidence            4677888888888887653

>d1k3ia3 b.69.1.1 (A:151-537) Galactose oxidase, central domain {Fungi (Fusarium sp.) [TaxId: 29916]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Galactose oxidase, central domain
family: Galactose oxidase, central domain
domain: Galactose oxidase, central domain
species: Fungi (Fusarium sp.) [TaxId: 29916]

Probab=99.89  E-value=8.7e-22  Score=164.01  Aligned_cols=192  Identities=16%  Similarity=0.165  Sum_probs=131.0

Q ss_pred             HHHHHhhcccceEEEeccCCCCCCCceeeEEecCCCEEEEECcEEeCCCceeeCCCcccCceEEEEe----eecCCCCCC
Q psy14331         25 RDIEAEEKRKNKVIEKVVPEPTRRANFSFLAHPDKDQLILFGGEFYDGQKFVFGSPKALDHLILMNL----FVSAPGAPP  100 (265)
Q Consensus        25 ~~~~~~d~~~~~w~~~~~~~p~~r~~~~~~~~~~~~~lyv~GG~~~~~~~~~~~~~~~~~~~~~yd~----w~~~~~~p~  100 (265)
                      +.++.||+.+++|.. .+++|.+|..|+++++ .++++|++||.......        ++++++||+    |...+.++.
T Consensus        98 ~~~~~yd~~~~~w~~-~~~~~~~r~~~~~~~~-~dG~v~v~GG~~~~~~~--------~~~v~~yd~~~~~W~~~~~~~~  167 (387)
T d1k3ia3          98 KKTSLYDSSSDSWIP-GPDMQVARGYQSSATM-SDGRVFTIGGSWSGGVF--------EKNGEVYSPSSKTWTSLPNAKV  167 (387)
T ss_dssp             TCEEEEEGGGTEEEE-CCCCSSCCSSCEEEEC-TTSCEEEECCCCCSSSC--------CCCEEEEETTTTEEEEETTSCS
T ss_pred             cceeEecCccCcccc-cccccccccccceeee-cCCceeeeccccccccc--------cceeeeecCCCCceeecCCCcc
Confidence            357889999999998 8899999999998887 57899999995322222        566777777    554433221


Q ss_pred             C--------------------------------------------------------------ccccceEEEecCCCEEE
Q psy14331        101 P--------------------------------------------------------------RCSHQMVALSADKGQLW  118 (265)
Q Consensus       101 ~--------------------------------------------------------------r~~~~~~~~~~~~~~iy  118 (265)
                      +                                                              +..+.++.+...++++|
T Consensus       168 ~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~v~  247 (387)
T d1k3ia3         168 NPMLTADKQGLYRSDNHAWLFGWKKGSVFQAGPSTAMNWYYTSGSGDVKSAGKRQSNRGVAPDAMCGNAVMYDAVKGKIL  247 (387)
T ss_dssp             GGGCCCCTTGGGTTTCSCCEEECGGGCEEECCSSSEEEEEECSTTCEEEEEEECEETTEECCCCBTCEEEEEETTTTEEE
T ss_pred             cccccccccceeeccceeEEEEeCCCCEEEecCcCCcEEecCcccCcEeeccccccCcccCcccccccEEEeeccCCceE
Confidence            1                                                              11112223333468899


Q ss_pred             EEcCcccCCCccccccCCceeEE-----EcCCCcEEEEecCCCCCCCcCceEEEE-CCEEEEEcCccCCC--CccccCCc
Q psy14331        119 MFGGEFSSASESQFHHYKDLWVF-----RMGEKKWEKIVCKDTPPSRSGHRMIAL-KKHLVVFGGFHDNL--REAKYYND  190 (265)
Q Consensus       119 v~GG~~~~~~~~~~~~~~~~~~y-----d~~~~~W~~~~~~~~p~~~~~~~~~~~-~~~iyv~GG~~~~~--~~~~~~~~  190 (265)
                      ++||.........   ......+     +...+.|..+..+  |.+|..|+++++ +++||++||.....  ........
T Consensus       248 v~GG~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~--p~~r~~~~~~~~~dg~i~v~GG~~~~~~~~~~~~~~~  322 (387)
T d1k3ia3         248 TFGGSPDYQDSDA---TTNAHIITLGEPGTSPNTVFASNGL--YFARTFHTSVVLPDGSTFITGGQRRGIPFEDSTPVFT  322 (387)
T ss_dssp             EECCBSSSSSSBC---CCCEEEEECCSTTSCCEEEECTTCC--SSCCBSCEEEECTTSCEEEECCBSBCCTTCCCSBCCC
T ss_pred             EEEeccCCCCCcc---cceeecccccccccCCCceeecccc--ccccccceeeeccCCeEEEECCcccCccCCCCcEece
Confidence            9999754332111   2222222     2334456655544  689999988888 67999999975332  12245678


Q ss_pred             eEEEEcCCCceEEeccCCCCCCCCCCceEEEe-CCCeEEEEcCcc
Q psy14331        191 VHIFDLETYAWKKIEPLGAGPAPRSGCQMAAT-PDGKILISGGYS  234 (265)
Q Consensus       191 v~~y~~~~~~W~~~~~~~~~p~~~~~~~~~~~-~~~~iyi~GG~~  234 (265)
                      +++||+.+++|+.+.++   |.+|..|+++++ .+++|||+||..
T Consensus       323 ve~Ydp~~~~W~~~~~~---~~~R~~Hs~a~l~~dG~v~v~GG~~  364 (387)
T d1k3ia3         323 PEIYVPEQDTFYKQNPN---SIVRVYHSISLLLPDGRVFNGGGGL  364 (387)
T ss_dssp             CEEEEGGGTEEEECCCC---SSCCCTTEEEEECTTSCEEEEECCC
T ss_pred             EEEEECCCCeEEECCCC---CCcccceEEEEECCCCEEEEEeCCC
Confidence            99999999999999884   888998886543 578999999964

>d1su3a2 b.66.1.1 (A:271-465) Collagenase (MMP1), C-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 4-bladed beta-propeller
superfamily: Hemopexin-like domain
family: Hemopexin-like domain
domain: Collagenase (MMP1), C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.77  E-value=0.16  Score=36.20  Aligned_cols=94  Identities=14%  Similarity=0.112  Sum_probs=49.2

Q ss_pred             CCCEEEEEcCcccCCCccccccCCceeEEEcCCCc---EEEEe-cCCCCCCCcCc-eEEEE--CCEEEEEcCccCCCCcc
Q psy14331        113 DKGQLWMFGGEFSSASESQFHHYKDLWVFRMGEKK---WEKIV-CKDTPPSRSGH-RMIAL--KKHLVVFGGFHDNLREA  185 (265)
Q Consensus       113 ~~~~iyv~GG~~~~~~~~~~~~~~~~~~yd~~~~~---W~~~~-~~~~p~~~~~~-~~~~~--~~~iyv~GG~~~~~~~~  185 (265)
                      .++++|++-|             +.+++|+-.+..   -..+. ..+.|.....- ++...  ++++|+|-|        
T Consensus        66 ~~~~~yfFkG-------------~~y~~y~~~~~~~g~p~~i~~~~G~p~~~~~idaa~~~~~~~~~Y~FkG--------  124 (195)
T d1su3a2          66 DRDEVRFFKG-------------NKYWAVQGQNVLHGYPKDIYSSFGFPRTVKHIDAALSEENTGKTYFFVA--------  124 (195)
T ss_dssp             GGTEEEEEET-------------TEEEEEETTEECTTCSEEHHHHHCCCTTCCCCCEEEEETTTTEEEEEET--------
T ss_pred             CCcEEEEECC-------------cEEEEEcCCccccCCCccchhhcCCCCCccccccccccCCCCeEEEEeC--------
Confidence            3688999987             347788742211   11111 11122222222 23333  579999987        


Q ss_pred             ccCCceEEEEcCCCceE-----EeccC-CCCCCCCCCceEEEeCCCeEEEEcCc
Q psy14331        186 KYYNDVHIFDLETYAWK-----KIEPL-GAGPAPRSGCQMAATPDGKILISGGY  233 (265)
Q Consensus       186 ~~~~~v~~y~~~~~~W~-----~~~~~-~~~p~~~~~~~~~~~~~~~iyi~GG~  233 (265)
                         +..|+||..+++-+     .+... +.+|. +. .++.. .++++|++-|.
T Consensus       125 ---~~y~ry~~~~~~vd~gyPk~I~~~w~Gvp~-~i-DAAf~-~~g~~YfFkg~  172 (195)
T d1su3a2         125 ---NKYWRYDEYKRSMDPGYPKMIAHDFPGIGH-KV-DAVFM-KDGFFYFFHGT  172 (195)
T ss_dssp             ---TEEEEEETTTTEECSSCSEEHHHHSTTSCS-CC-SEEEE-ETTEEEEEETT
T ss_pred             ---CEEEEEeccCccccCCcccccccccCCCCC-Cc-cEEEE-ECCeEEEEECC
Confidence               46799998876422     12211 11333 22 33344 48899998765

>d1pexa_ b.66.1.1 (A:) Collagenase-3 (MMP-13), C-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 4-bladed beta-propeller
superfamily: Hemopexin-like domain
family: Hemopexin-like domain
domain: Collagenase-3 (MMP-13), C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.42  E-value=0.26  Score=34.86  Aligned_cols=95  Identities=17%  Similarity=0.228  Sum_probs=48.7

Q ss_pred             CCCEEEEEcCcccCCCccccccCCceeEEEcCCCcE---EEEecCCCCCCCcCc-eEEEE--CCEEEEEcCccCCCCccc
Q psy14331        113 DKGQLWMFGGEFSSASESQFHHYKDLWVFRMGEKKW---EKIVCKDTPPSRSGH-RMIAL--KKHLVVFGGFHDNLREAK  186 (265)
Q Consensus       113 ~~~~iyv~GG~~~~~~~~~~~~~~~~~~yd~~~~~W---~~~~~~~~p~~~~~~-~~~~~--~~~iyv~GG~~~~~~~~~  186 (265)
                      .++++|++-|.             .+|+|+..+...   +.+.....|.+.... ++...  ++++|+|-|         
T Consensus        63 ~~~~~yffkg~-------------~~w~y~~~~~~~gyPk~i~~~~~~~~~~~idaA~~~~~~~~~y~Fkg---------  120 (192)
T d1pexa_          63 SHDLIFIFRGR-------------KFWALNGYDILEGYPKKISELGLPKEVKKISAAVHFEDTGKTLLFSG---------  120 (192)
T ss_dssp             TTTEEEEEETT-------------EEEEESTTCCCTTCSEESTTTTCCTTCCCCCEEEECTTTSEEEEEET---------
T ss_pred             CCCEEEEEcCC-------------EEEEEcCCcccCCCCeEeeeeecCCCCCCccEEEEECCCCEEEEEeC---------
Confidence            46888888773             367776433222   122221112222222 33333  579999976         


Q ss_pred             cCCceEEEEcCCCceE-----Eecc-CCCCCCCCCCceEEEeCCCeEEEEcCcc
Q psy14331        187 YYNDVHIFDLETYAWK-----KIEP-LGAGPAPRSGCQMAATPDGKILISGGYS  234 (265)
Q Consensus       187 ~~~~v~~y~~~~~~W~-----~~~~-~~~~p~~~~~~~~~~~~~~~iyi~GG~~  234 (265)
                        +..|+||..++.=.     .+.. -+..|. +. .++.. .++++|+|-|..
T Consensus       121 --~~y~~y~~~~~~~~~~~pk~I~~~w~gvp~-~v-dAa~~-~~g~~YfF~g~~  169 (192)
T d1pexa_         121 --NQVWRYDDTNHIMDKDYPRLIEEDFPGIGD-KV-DAVYE-KNGYIYFFNGPI  169 (192)
T ss_dssp             --TEEEEEETTTTEECSSCCCBHHHHSTTSCS-CC-SEEEE-ETTEEEEEETTE
T ss_pred             --CEEEEEcCccccccCCCcEEHhhcCCCCCC-Cc-eEEEE-eCCEEEEEECCE
Confidence              45788987765322     1221 111222 22 34444 488999997653

>d1pexa_ b.66.1.1 (A:) Collagenase-3 (MMP-13), C-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 4-bladed beta-propeller
superfamily: Hemopexin-like domain
family: Hemopexin-like domain
domain: Collagenase-3 (MMP-13), C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.53  E-value=0.48  Score=33.40  Aligned_cols=105  Identities=13%  Similarity=0.239  Sum_probs=59.1

Q ss_pred             cCCCEEEEECcEEeCCCceeeCCCcccCceEEEEeee-------cCCC--CCCCccccceEEEecCCCEEEEEcCcccCC
Q psy14331         57 PDKDQLILFGGEFYDGQKFVFGSPKALDHLILMNLFV-------SAPG--APPPRCSHQMVALSADKGQLWMFGGEFSSA  127 (265)
Q Consensus        57 ~~~~~lyv~GG~~~~~~~~~~~~~~~~~~~~~yd~w~-------~~~~--~p~~r~~~~~~~~~~~~~~iyv~GG~~~~~  127 (265)
                      +.++++|+|-|                +.+|+|+...       ....  +|.+-..--++.....++++|++-|     
T Consensus        62 ~~~~~~yffkg----------------~~~w~y~~~~~~~gyPk~i~~~~~~~~~~~idaA~~~~~~~~~y~Fkg-----  120 (192)
T d1pexa_          62 PSHDLIFIFRG----------------RKFWALNGYDILEGYPKKISELGLPKEVKKISAAVHFEDTGKTLLFSG-----  120 (192)
T ss_dssp             TTTTEEEEEET----------------TEEEEESTTCCCTTCSEESTTTTCCTTCCCCCEEEECTTTSEEEEEET-----
T ss_pred             cCCCEEEEEcC----------------CEEEEEcCCcccCCCCeEeeeeecCCCCCCccEEEEECCCCEEEEEeC-----
Confidence            46888999888                4667776511       1111  2222222223333334689999976     


Q ss_pred             CccccccCCceeEEEcCCCcEEEEecC-------CCCCCCcCceEEEECCEEEEEcCccCCCCccccCCceEEEEcCCCc
Q psy14331        128 SESQFHHYKDLWVFRMGEKKWEKIVCK-------DTPPSRSGHRMIALKKHLVVFGGFHDNLREAKYYNDVHIFDLETYA  200 (265)
Q Consensus       128 ~~~~~~~~~~~~~yd~~~~~W~~~~~~-------~~p~~~~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~v~~y~~~~~~  200 (265)
                              +..++||..++.=..-.+.       +.|. .. .++...++++|+|-|           +..++||..+++
T Consensus       121 --------~~y~~y~~~~~~~~~~~pk~I~~~w~gvp~-~v-dAa~~~~g~~YfF~g-----------~~y~r~~~~~~~  179 (192)
T d1pexa_         121 --------NQVWRYDDTNHIMDKDYPRLIEEDFPGIGD-KV-DAVYEKNGYIYFFNG-----------PIQFEYSIWSNR  179 (192)
T ss_dssp             --------TEEEEEETTTTEECSSCCCBHHHHSTTSCS-CC-SEEEEETTEEEEEET-----------TEEEEEETTTTE
T ss_pred             --------CEEEEEcCccccccCCCcEEHhhcCCCCCC-Cc-eEEEEeCCEEEEEEC-----------CEEEEEeCCcCe
Confidence                    3478898766532111111       1222 22 245556899999987           467888887765


Q ss_pred             eEE
Q psy14331        201 WKK  203 (265)
Q Consensus       201 W~~  203 (265)
                      -..
T Consensus       180 v~~  182 (192)
T d1pexa_         180 IVR  182 (192)
T ss_dssp             EEE
T ss_pred             Ecc
Confidence            443

>d1itva_ b.66.1.1 (A:) Gelatinase B (MMP-9) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 4-bladed beta-propeller
superfamily: Hemopexin-like domain
family: Hemopexin-like domain
domain: Gelatinase B (MMP-9)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.30  E-value=0.55  Score=33.17  Aligned_cols=95  Identities=12%  Similarity=0.189  Sum_probs=49.5

Q ss_pred             CCCEEEEEcCcccCCCccccccCCceeEEEcCCCcE-EEEecCCCCCCCcCceEE-EE-CCEEEEEcCccCCCCccccCC
Q psy14331        113 DKGQLWMFGGEFSSASESQFHHYKDLWVFRMGEKKW-EKIVCKDTPPSRSGHRMI-AL-KKHLVVFGGFHDNLREAKYYN  189 (265)
Q Consensus       113 ~~~~iyv~GG~~~~~~~~~~~~~~~~~~yd~~~~~W-~~~~~~~~p~~~~~~~~~-~~-~~~iyv~GG~~~~~~~~~~~~  189 (265)
                      .++++|++-|.             .+|+|+-.+-.- +.+.....|.....-.++ .. ++++|+|=|           +
T Consensus        63 ~~~k~yfFkg~-------------~~~~y~~~~~~~Pk~i~~~g~p~~~~~idaa~~~~~g~~Y~FkG-----------~  118 (195)
T d1itva_          63 LSKKLFFFSGR-------------QVWVYTGASVLGPRRLDKLGLGADVAQVTGALRSGRGKMLLFSG-----------R  118 (195)
T ss_dssp             TTCCEEEEETT-------------EEEEEETTEEEEEEEGGGGTCCTTCCCCCEEEECSTTEEEEEET-----------T
T ss_pred             CCCEEEEEecC-------------EEEEEcCccccCCEEhhhcCCCCCchheeeEEEcCCCeEEEEec-----------c
Confidence            36789998663             467776321111 122222223322222222 22 679999976           3


Q ss_pred             ceEEEEcCCCceE-----Eecc-CCCCCCCCCCceEEEeCCCeEEEEcCcc
Q psy14331        190 DVHIFDLETYAWK-----KIEP-LGAGPAPRSGCQMAATPDGKILISGGYS  234 (265)
Q Consensus       190 ~v~~y~~~~~~W~-----~~~~-~~~~p~~~~~~~~~~~~~~~iyi~GG~~  234 (265)
                      ..|+||..+++-.     .+.. -+.+|..  -.++... ++.+|++-|..
T Consensus       119 ~y~ryd~~~~~v~~gyPk~i~~~w~gvp~~--idaAf~~-~~~~Yffkg~~  166 (195)
T d1itva_         119 RLWRFDVKAQMVDPRSASEVDRMFPGVPLD--THDVFQF-REKAYFCQDRF  166 (195)
T ss_dssp             EEEEEETTTTEECGGGCEEHHHHSTTSCSS--CSEEEEE-TTEEEEEETTE
T ss_pred             EEEEEeCCcccccCCCccchhhhcCCCCCC--CcEEEEe-CCcEEEEECCE
Confidence            6799998876422     1211 1123332  2444555 78899886653

>d1su3a2 b.66.1.1 (A:271-465) Collagenase (MMP1), C-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 4-bladed beta-propeller
superfamily: Hemopexin-like domain
family: Hemopexin-like domain
domain: Collagenase (MMP1), C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=93.78  E-value=0.56  Score=33.15  Aligned_cols=110  Identities=14%  Similarity=0.193  Sum_probs=62.6

Q ss_pred             eEEecCCCEEEEECcEEeCCCceeeCCCcccCceEEEEeeecCC----------CCCCCccccceEEEecCCCEEEEEcC
Q psy14331         53 FLAHPDKDQLILFGGEFYDGQKFVFGSPKALDHLILMNLFVSAP----------GAPPPRCSHQMVALSADKGQLWMFGG  122 (265)
Q Consensus        53 ~~~~~~~~~lyv~GG~~~~~~~~~~~~~~~~~~~~~yd~w~~~~----------~~p~~r~~~~~~~~~~~~~~iyv~GG  122 (265)
                      +...+.++++|+|-|                +..|+|+.....+          .+|.....--++.....++++|++-|
T Consensus        61 Af~~~~~~~~yfFkG----------------~~y~~y~~~~~~~g~p~~i~~~~G~p~~~~~idaa~~~~~~~~~Y~FkG  124 (195)
T d1su3a2          61 AYEFADRDEVRFFKG----------------NKYWAVQGQNVLHGYPKDIYSSFGFPRTVKHIDAALSEENTGKTYFFVA  124 (195)
T ss_dssp             EEEEGGGTEEEEEET----------------TEEEEEETTEECTTCSEEHHHHHCCCTTCCCCCEEEEETTTTEEEEEET
T ss_pred             eEEecCCcEEEEECC----------------cEEEEEcCCccccCCCccchhhcCCCCCccccccccccCCCCeEEEEeC
Confidence            333435689999988                5777777511111          12322222223333234689999987


Q ss_pred             cccCCCccccccCCceeEEEcCCCcEEE-----Eec-C-CCCCCCcCceEEEECCEEEEEcCccCCCCccccCCceEEEE
Q psy14331        123 EFSSASESQFHHYKDLWVFRMGEKKWEK-----IVC-K-DTPPSRSGHRMIALKKHLVVFGGFHDNLREAKYYNDVHIFD  195 (265)
Q Consensus       123 ~~~~~~~~~~~~~~~~~~yd~~~~~W~~-----~~~-~-~~p~~~~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~v~~y~  195 (265)
                                   +..++||..++.-..     +.. . ++|...  .++...++++|+|-|           +..++||
T Consensus       125 -------------~~y~ry~~~~~~vd~gyPk~I~~~w~Gvp~~i--DAAf~~~g~~YfFkg-----------~~y~r~~  178 (195)
T d1su3a2         125 -------------NKYWRYDEYKRSMDPGYPKMIAHDFPGIGHKV--DAVFMKDGFFYFFHG-----------TRQYKFD  178 (195)
T ss_dssp             -------------TEEEEEETTTTEECSSCSEEHHHHSTTSCSCC--SEEEEETTEEEEEET-----------TEEEEEE
T ss_pred             -------------CEEEEEeccCccccCCcccccccccCCCCCCc--cEEEEECCeEEEEEC-----------CEEEEEe
Confidence                         358899987763211     111 0 123322  245566899999987           4678888


Q ss_pred             cCCCceEEe
Q psy14331        196 LETYAWKKI  204 (265)
Q Consensus       196 ~~~~~W~~~  204 (265)
                      ..+.+-..+
T Consensus       179 ~~~~~v~~~  187 (195)
T d1su3a2         179 PKTKRILTL  187 (195)
T ss_dssp             TTTTEEEEE
T ss_pred             CCcCEEEec
Confidence            877655443

>d1qhua1 b.66.1.1 (A:24-215) Hemopexin {Rabbit (Oryctolagus cuniculus) [TaxId: 9986]}

class: All beta proteins
fold: 4-bladed beta-propeller
superfamily: Hemopexin-like domain
family: Hemopexin-like domain
domain: Hemopexin
species: Rabbit (Oryctolagus cuniculus) [TaxId: 9986]

Probab=92.32  E-value=1.2  Score=31.22  Aligned_cols=50  Identities=20%  Similarity=0.134  Sum_probs=29.7

Q ss_pred             CCEEEEEcCccCCCCccccCCceEEEEcCCCceEEeccCCCCCCCCCCceEEEeCCCeEEEEcCcc
Q psy14331        169 KKHLVVFGGFHDNLREAKYYNDVHIFDLETYAWKKIEPLGAGPAPRSGCQMAATPDGKILISGGYS  234 (265)
Q Consensus       169 ~~~iyv~GG~~~~~~~~~~~~~v~~y~~~~~~W~~~~~~~~~p~~~~~~~~~~~~~~~iyi~GG~~  234 (265)
                      ++++|+|-|           +..|+||..+..=..-.- +.+|  +. .+++.. ++++|+|-|..
T Consensus       110 ~~~~yfFkg-----------~~yw~yd~~~~~~~~~~w-~gip--~~-daA~~~-~g~~YfFkg~~  159 (192)
T d1qhua1         110 DEGILFFQG-----------NRKWFWDLTTGTKKERSW-PAVG--NC-TSALRW-LGRYYCFQGNQ  159 (192)
T ss_dssp             SSEEEEEET-----------TEEEEEETTTTEEEEECC-TTSC--CC-SEEEEE-TTEEEEEETTE
T ss_pred             CCeEEEEeC-----------CeEEEEeCCCCCcccccc-cCcC--Cc-ceeEEe-CCcEEEEECCE
Confidence            679999987           357899988763111111 1122  22 233344 88999997653

>d1qksa2 b.70.2.1 (A:136-567) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
species: Paracoccus denitrificans [TaxId: 266]

Probab=92.07  E-value=0.69  Score=36.88  Aligned_cols=95  Identities=9%  Similarity=-0.032  Sum_probs=53.3

Q ss_pred             HHHhhcccceEEEeccCCCCCCCceeeEEecCCCEEEEECcEEeCCCceeeCCCcccCceEEEEeeecC----CCCCCCc
Q psy14331         27 IEAEEKRKNKVIEKVVPEPTRRANFSFLAHPDKDQLILFGGEFYDGQKFVFGSPKALDHLILMNLFVSA----PGAPPPR  102 (265)
Q Consensus        27 ~~~~d~~~~~w~~~~~~~p~~r~~~~~~~~~~~~~lyv~GG~~~~~~~~~~~~~~~~~~~~~yd~w~~~----~~~p~~r  102 (265)
                      +..+|..+.+-...   ++....-|++++-|+++.+|+.+-               -..+..+|+.+..    ..++.. 
T Consensus        44 v~v~D~~t~~v~~~---~~~g~~~~~v~fSpDG~~l~~~s~---------------dg~v~~~d~~t~~~~~~~~i~~~-  104 (432)
T d1qksa2          44 IALIDGSTYEIKTV---LDTGYAVHISRLSASGRYLFVIGR---------------DGKVNMIDLWMKEPTTVAEIKIG-  104 (432)
T ss_dssp             EEEEETTTCCEEEE---EECSSCEEEEEECTTSCEEEEEET---------------TSEEEEEETTSSSCCEEEEEECC-
T ss_pred             EEEEECCCCcEEEE---EeCCCCeeEEEECCCCCEEEEEcC---------------CCCEEEEEeeCCCceEEEEEecC-
Confidence            56677777776442   334445677888888889987643               2456667762111    111211 


Q ss_pred             cccceEEEec----CCCEEEEEcCcccCCCccccccCCceeEEEcCCCcEEEE
Q psy14331        103 CSHQMVALSA----DKGQLWMFGGEFSSASESQFHHYKDLWVFRMGEKKWEKI  151 (265)
Q Consensus       103 ~~~~~~~~~~----~~~~iyv~GG~~~~~~~~~~~~~~~~~~yd~~~~~W~~~  151 (265)
                      ..|...+...    +++.||+.+..           -+.+..+|.++++-...
T Consensus       105 ~~~~~~~~s~~~SpDG~~l~vs~~~-----------~~~v~i~d~~t~~~~~~  146 (432)
T d1qksa2         105 SEARSIETSKMEGWEDKYAIAGAYW-----------PPQYVIMDGETLEPKKI  146 (432)
T ss_dssp             SEEEEEEECCSTTCTTTEEEEEEEE-----------TTEEEEEETTTCCEEEE
T ss_pred             CCCCCeEEecccCCCCCEEEEEcCC-----------CCeEEEEeCccccceee
Confidence            1222222221    24457776553           25588899988876554

>d1gena_ b.66.1.1 (A:) Gelatinase A (MMP-2), C-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 4-bladed beta-propeller
superfamily: Hemopexin-like domain
family: Hemopexin-like domain
domain: Gelatinase A (MMP-2), C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=91.21  E-value=1.7  Score=30.64  Aligned_cols=96  Identities=14%  Similarity=0.247  Sum_probs=49.3

Q ss_pred             CCCEEEEEcCcccCCCccccccCCceeEEEcCCCcE---EEEecCCCCCCCcC-ceEEEE--CCEEEEEcCccCCCCccc
Q psy14331        113 DKGQLWMFGGEFSSASESQFHHYKDLWVFRMGEKKW---EKIVCKDTPPSRSG-HRMIAL--KKHLVVFGGFHDNLREAK  186 (265)
Q Consensus       113 ~~~~iyv~GG~~~~~~~~~~~~~~~~~~yd~~~~~W---~~~~~~~~p~~~~~-~~~~~~--~~~iyv~GG~~~~~~~~~  186 (265)
                      .++++|++-|.             ..|+|+-.+-..   +.+.....|..... -+|...  ++++|+|-|         
T Consensus        68 ~~~~~yffkg~-------------~~~~y~~~~~~~gyPk~i~~~g~p~~~~~iDAA~~~~~~g~~YfFkg---------  125 (200)
T d1gena_          68 QEEKAVFFAGN-------------EYWIYSASTLERGYPKPLTSLGLPPDVQRVDAAFNWSKNKKTYIFAG---------  125 (200)
T ss_dssp             TTTEEEEEETT-------------EEEEEETTEECTTCSEEGGGGTCCTTCCCCSEEEEETTTTEEEEEET---------
T ss_pred             CCCeEEEecCc-------------eEEEEcCcccccCCCceehhcCCCCCccceeeEEEECCCCeEEEEeC---------
Confidence            46788888773             467776322110   11222122222111 134443  579999987         


Q ss_pred             cCCceEEEEcCCCceE-----Eecc-CCCCCCCCCCceEEEe-CCCeEEEEcCcc
Q psy14331        187 YYNDVHIFDLETYAWK-----KIEP-LGAGPAPRSGCQMAAT-PDGKILISGGYS  234 (265)
Q Consensus       187 ~~~~v~~y~~~~~~W~-----~~~~-~~~~p~~~~~~~~~~~-~~~~iyi~GG~~  234 (265)
                        +..|+||..+++=+     .+.. -+.+|. + -.++... .++++|++-|..
T Consensus       126 --~~y~ryd~~~~~vd~~yPk~I~~~w~gvp~-~-idAAf~~~~~g~~Yff~g~~  176 (200)
T d1gena_         126 --DKFWRYNEVKKKMDPGFPKLIADAWNAIPD-N-LDAVVDLQGGGHSYFFKGAY  176 (200)
T ss_dssp             --TEEEEEETTTTEECSSCCEEHHHHSSSCCS-S-CSEEEECTTTCEEEEEETTE
T ss_pred             --cEEEEeccccceeccCcceehhhccCCCCC-C-ccEEEEecCCCEEEEEECCE
Confidence              46789998775421     2221 111332 2 2344443 367899986653

>d1jmxb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Pseudomonas putida [TaxId: 303]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Quinohemoprotein amine dehydrogenase B chain
domain: Quinohemoprotein amine dehydrogenase B chain
species: Pseudomonas putida [TaxId: 303]

Probab=91.14  E-value=0.7  Score=34.53  Aligned_cols=51  Identities=10%  Similarity=0.200  Sum_probs=35.4

Q ss_pred             HHHHhhcccceEEEeccCCCCCCCceeeEEecCCCEEEEECcEEeCCCceeeCCCcccCceEEEEe
Q psy14331         26 DIEAEEKRKNKVIEKVVPEPTRRANFSFLAHPDKDQLILFGGEFYDGQKFVFGSPKALDHLILMNL   91 (265)
Q Consensus        26 ~~~~~d~~~~~w~~~~~~~p~~r~~~~~~~~~~~~~lyv~GG~~~~~~~~~~~~~~~~~~~~~yd~   91 (265)
                      .+..+|..+.+-.. ....|.......+++.|++..+|+.+..              -+.+..||+
T Consensus        19 ~v~v~D~~t~~~~~-t~~~~~~~~p~~l~~spDG~~l~v~~~~--------------~~~v~~~d~   69 (346)
T d1jmxb_          19 NLHVVDVASDTVYK-SCVMPDKFGPGTAMMAPDNRTAYVLNNH--------------YGDIYGIDL   69 (346)
T ss_dssp             EEEEEETTTTEEEE-EEECSSCCSSCEEEECTTSSEEEEEETT--------------TTEEEEEET
T ss_pred             EEEEEECCCCCEEE-EEEcCCCCCcceEEECCCCCEEEEEECC--------------CCcEEEEeC
Confidence            37788998887654 3345555555677777788899988762              356778887

>d1nr0a2 b.69.4.1 (A:313-611) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=91.04  E-value=1.1  Score=32.91  Aligned_cols=27  Identities=15%  Similarity=0.075  Sum_probs=17.7

Q ss_pred             CCEEEEEcCcccCCCccccccCCceeEEEcCCCcEEEE
Q psy14331        114 KGQLWMFGGEFSSASESQFHHYKDLWVFRMGEKKWEKI  151 (265)
Q Consensus       114 ~~~iyv~GG~~~~~~~~~~~~~~~~~~yd~~~~~W~~~  151 (265)
                      ++.+++.|+.+           +.+..+|+.+.....+
T Consensus       235 ~~~~l~sgs~d-----------g~i~iwd~~~~~~~~~  261 (299)
T d1nr0a2         235 DNVRLATGSLD-----------NSVIVWNMNKPSDHPI  261 (299)
T ss_dssp             TSSEEEEEETT-----------SCEEEEETTCTTSCCE
T ss_pred             cccceEEEcCC-----------CEEEEEECCCCCcceE
Confidence            56777777743           3488889887654433

>d1itva_ b.66.1.1 (A:) Gelatinase B (MMP-9) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 4-bladed beta-propeller
superfamily: Hemopexin-like domain
family: Hemopexin-like domain
domain: Gelatinase B (MMP-9)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=90.68  E-value=1.9  Score=30.25  Aligned_cols=62  Identities=13%  Similarity=0.298  Sum_probs=38.9

Q ss_pred             CCCEEEEEcCcccCCCccccccCCceeEEEcCCCcEEEEec-------CCCCCCCcCceEEEECCEEEEEcCccCCCCcc
Q psy14331        113 DKGQLWMFGGEFSSASESQFHHYKDLWVFRMGEKKWEKIVC-------KDTPPSRSGHRMIALKKHLVVFGGFHDNLREA  185 (265)
Q Consensus       113 ~~~~iyv~GG~~~~~~~~~~~~~~~~~~yd~~~~~W~~~~~-------~~~p~~~~~~~~~~~~~~iyv~GG~~~~~~~~  185 (265)
                      .++++|++-|             +..++||..++.-..-.+       .++|.  .-.++...++.+|+|-|        
T Consensus       108 ~~g~~Y~FkG-------------~~y~ryd~~~~~v~~gyPk~i~~~w~gvp~--~idaAf~~~~~~Yffkg--------  164 (195)
T d1itva_         108 GRGKMLLFSG-------------RRLWRFDVKAQMVDPRSASEVDRMFPGVPL--DTHDVFQFREKAYFCQD--------  164 (195)
T ss_dssp             STTEEEEEET-------------TEEEEEETTTTEECGGGCEEHHHHSTTSCS--SCSEEEEETTEEEEEET--------
T ss_pred             CCCeEEEEec-------------cEEEEEeCCcccccCCCccchhhhcCCCCC--CCcEEEEeCCcEEEEEC--------
Confidence            3689999977             348999987764221111       11232  23456667899999977        


Q ss_pred             ccCCceEEEEcCCCc
Q psy14331        186 KYYNDVHIFDLETYA  200 (265)
Q Consensus       186 ~~~~~v~~y~~~~~~  200 (265)
                         ...++||..+..
T Consensus       165 ---~~y~r~~~~~~~  176 (195)
T d1itva_         165 ---RFYWRVSSRSEL  176 (195)
T ss_dssp             ---TEEEEEECCTTC
T ss_pred             ---CEEEEEcCCcee
Confidence               356788865543

>d1nr0a2 b.69.4.1 (A:313-611) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=89.88  E-value=1.5  Score=32.12  Aligned_cols=87  Identities=9%  Similarity=0.066  Sum_probs=42.5

Q ss_pred             CceeEEEcCCCcEEEEecCCCCCCCcCceEEEE--CCEEEEEcCccCCCCccccCCceEEEEcCCCceEEeccCCCCCCC
Q psy14331        136 KDLWVFRMGEKKWEKIVCKDTPPSRSGHRMIAL--KKHLVVFGGFHDNLREAKYYNDVHIFDLETYAWKKIEPLGAGPAP  213 (265)
Q Consensus       136 ~~~~~yd~~~~~W~~~~~~~~p~~~~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~~v~~y~~~~~~W~~~~~~~~~p~~  213 (265)
                      ..+..||..++........ .......-..+..  ++.+++.|+.+         +.+..||+.+.....+....  ...
T Consensus       201 ~~i~~~~~~~~~~~~~~~~-~~~h~~~v~~l~~s~~~~~l~sgs~d---------g~i~iwd~~~~~~~~~~~~~--~~~  268 (299)
T d1nr0a2         201 RKVIPYSVANNFELAHTNS-WTFHTAKVACVSWSPDNVRLATGSLD---------NSVIVWNMNKPSDHPIIIKG--AHA  268 (299)
T ss_dssp             SCEEEEEGGGTTEESCCCC-CCCCSSCEEEEEECTTSSEEEEEETT---------SCEEEEETTCTTSCCEEETT--SST
T ss_pred             ccccccccccccccccccc-ccccccccccccccccccceEEEcCC---------CEEEEEECCCCCcceEEEec--CCC
Confidence            4588899877654322111 0011111122222  56677777753         35888998876544333221  111


Q ss_pred             CCCceEEEeCCCeEEEEcCcc
Q psy14331        214 RSGCQMAATPDGKILISGGYS  234 (265)
Q Consensus       214 ~~~~~~~~~~~~~iyi~GG~~  234 (265)
                      .....++...++..++.||.+
T Consensus       269 ~~~v~~~~~~~~~~l~s~s~D  289 (299)
T d1nr0a2         269 MSSVNSVIWLNETTIVSAGQD  289 (299)
T ss_dssp             TSCEEEEEEEETTEEEEEETT
T ss_pred             CCcEEEEEECCCCEEEEEeCC
Confidence            222222333356667777764

>d1k32a3 b.69.9.1 (A:320-679) Tricorn protease domain 2 {Archaeon Thermoplasma acidophilum [TaxId: 2303]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Tricorn protease domain 2
family: Tricorn protease domain 2
domain: Tricorn protease domain 2
species: Archaeon Thermoplasma acidophilum [TaxId: 2303]

Probab=89.33  E-value=1.9  Score=32.15  Aligned_cols=93  Identities=15%  Similarity=0.042  Sum_probs=48.7

Q ss_pred             CCEEEEEcCcccCCCccccccCCceeEEEcCCCcEEEEecCCCCCCCcCceEEEE-CCEEEEEcCccCCCCccccCCceE
Q psy14331        114 KGQLWMFGGEFSSASESQFHHYKDLWVFRMGEKKWEKIVCKDTPPSRSGHRMIAL-KKHLVVFGGFHDNLREAKYYNDVH  192 (265)
Q Consensus       114 ~~~iyv~GG~~~~~~~~~~~~~~~~~~yd~~~~~W~~~~~~~~p~~~~~~~~~~~-~~~iyv~GG~~~~~~~~~~~~~v~  192 (265)
                      +++.++++|...         -..+..+|..++.-+.+...   ... -.+++.. +++.+++++.         -..++
T Consensus        53 Dg~~l~~~~~~~---------g~~v~v~d~~~~~~~~~~~~---~~~-v~~~~~spdg~~l~~~~~---------~~~~~  110 (360)
T d1k32a3          53 DTKVAFIHGTRE---------GDFLGIYDYRTGKAEKFEEN---LGN-VFAMGVDRNGKFAVVAND---------RFEIM  110 (360)
T ss_dssp             SSEEEEEEEETT---------EEEEEEEETTTCCEEECCCC---CCS-EEEEEECTTSSEEEEEET---------TSEEE
T ss_pred             CCCEEEEEEcCC---------CCEEEEEECCCCcEEEeeCC---Cce-EEeeeecccccccceecc---------ccccc
Confidence            566555555322         13488999999887665422   111 1122222 5555555554         24578


Q ss_pred             EEEcCCCceEEeccCCCCCCCCCCceEEEeCCCeEEEEcC
Q psy14331        193 IFDLETYAWKKIEPLGAGPAPRSGCQMAATPDGKILISGG  232 (265)
Q Consensus       193 ~y~~~~~~W~~~~~~~~~p~~~~~~~~~~~~~~~iyi~GG  232 (265)
                      .++..+.+-..+...   ..... ..++...+++.+++.+
T Consensus       111 ~~~~~~~~~~~~~~~---~~~~~-~~~~~spdg~~la~~~  146 (360)
T d1k32a3         111 TVDLETGKPTVIERS---REAMI-TDFTISDNSRFIAYGF  146 (360)
T ss_dssp             EEETTTCCEEEEEEC---SSSCC-CCEEECTTSCEEEEEE
T ss_pred             cccccccceeeeeec---ccccc-cchhhccceeeeeeec
Confidence            889888776555442   11111 2233344666666543

>d1l0qa2 b.69.2.3 (A:1-301) Surface layer protein {Archaeon Methanosarcina mazei [TaxId: 2209]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: YVTN repeat
domain: Surface layer protein
species: Archaeon Methanosarcina mazei [TaxId: 2209]

Probab=89.19  E-value=1.1  Score=32.64  Aligned_cols=95  Identities=14%  Similarity=0.190  Sum_probs=51.7

Q ss_pred             HHHhhcccceEEEeccCCCCCCCceeeEEecCCCEEEEECcEEeCCCceeeCCCcccCceEEEEe--eecCCCCCCCccc
Q psy14331         27 IEAEEKRKNKVIEKVVPEPTRRANFSFLAHPDKDQLILFGGEFYDGQKFVFGSPKALDHLILMNL--FVSAPGAPPPRCS  104 (265)
Q Consensus        27 ~~~~d~~~~~w~~~~~~~p~~r~~~~~~~~~~~~~lyv~GG~~~~~~~~~~~~~~~~~~~~~yd~--w~~~~~~p~~r~~  104 (265)
                      +..+|..+.+.....   +.....+.+++-|++++||+.+..              -+.+.+||.  ......++.....
T Consensus        14 v~v~D~~t~~~~~~i---~~g~~p~~va~spdG~~l~v~~~~--------------~~~i~v~d~~t~~~~~~~~~~~~~   76 (301)
T d1l0qa2          14 ISVIDVTSNKVTATI---PVGSNPMGAVISPDGTKVYVANAH--------------SNDVSIIDTATNNVIATVPAGSSP   76 (301)
T ss_dssp             EEEEETTTTEEEEEE---ECSSSEEEEEECTTSSEEEEEEGG--------------GTEEEEEETTTTEEEEEEECSSSE
T ss_pred             EEEEECCCCeEEEEE---ECCCCceEEEEeCCCCEEEEEECC--------------CCEEEEEECCCCceeeeeeccccc
Confidence            566788888765422   222233566777778889887652              356788888  2211122222222


Q ss_pred             cceEEEecCCCEEEEEcCcccCCCccccccCCceeEEEcCCCcEEE
Q psy14331        105 HQMVALSADKGQLWMFGGEFSSASESQFHHYKDLWVFRMGEKKWEK  150 (265)
Q Consensus       105 ~~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~~~yd~~~~~W~~  150 (265)
                      +... +...++.+++.+..           -..+..++..+++-..
T Consensus        77 ~~~~-~~~~~~~~~~~~~~-----------~~~~~~~~~~~~~~~~  110 (301)
T d1l0qa2          77 QGVA-VSPDGKQVYVTNMA-----------SSTLSVIDTTSNTVAG  110 (301)
T ss_dssp             EEEE-ECTTSSEEEEEETT-----------TTEEEEEETTTTEEEE
T ss_pred             cccc-cccccccccccccc-----------cceeeecccccceeee
Confidence            3333 33334455554432           2446778887775443

>d1qhua1 b.66.1.1 (A:24-215) Hemopexin {Rabbit (Oryctolagus cuniculus) [TaxId: 9986]}

class: All beta proteins
fold: 4-bladed beta-propeller
superfamily: Hemopexin-like domain
family: Hemopexin-like domain
domain: Hemopexin
species: Rabbit (Oryctolagus cuniculus) [TaxId: 9986]

Probab=89.11  E-value=2.5  Score=29.45  Aligned_cols=60  Identities=12%  Similarity=0.201  Sum_probs=38.4

Q ss_pred             CCEEEEEcCcccCCCccccccCCceeEEEcCCCcEEEEecCCCCCCCcCceEEEECCEEEEEcCccCCCCccccCCceEE
Q psy14331        114 KGQLWMFGGEFSSASESQFHHYKDLWVFRMGEKKWEKIVCKDTPPSRSGHRMIALKKHLVVFGGFHDNLREAKYYNDVHI  193 (265)
Q Consensus       114 ~~~iyv~GG~~~~~~~~~~~~~~~~~~yd~~~~~W~~~~~~~~p~~~~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~v~~  193 (265)
                      ++++|++-|             +..++||..+..=..- .-+. .+.. .+++..++.+|+|-|           +..++
T Consensus       110 ~~~~yfFkg-------------~~yw~yd~~~~~~~~~-~w~g-ip~~-daA~~~~g~~YfFkg-----------~~y~r  162 (192)
T d1qhua1         110 DEGILFFQG-------------NRKWFWDLTTGTKKER-SWPA-VGNC-TSALRWLGRYYCFQG-----------NQFLR  162 (192)
T ss_dssp             SSEEEEEET-------------TEEEEEETTTTEEEEE-CCTT-SCCC-SEEEEETTEEEEEET-----------TEEEE
T ss_pred             CCeEEEEeC-------------CeEEEEeCCCCCcccc-cccC-cCCc-ceeEEeCCcEEEEEC-----------CEEEE
Confidence            688999977             3478999887631111 1111 1222 245556899999977           46788


Q ss_pred             EEcCCCc
Q psy14331        194 FDLETYA  200 (265)
Q Consensus       194 y~~~~~~  200 (265)
                      ||..+.+
T Consensus       163 ~~~~~~~  169 (192)
T d1qhua1         163 FNPVSGE  169 (192)
T ss_dssp             ECTTTCC
T ss_pred             EcCCcce
Confidence            8877754

>d1k8kc_ b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taurus) [TaxId: 9913]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Arp2/3 complex 41 kDa subunit ARPC1
species: Cow (Bos taurus) [TaxId: 9913]

Probab=88.76  E-value=3.8  Score=31.09  Aligned_cols=41  Identities=12%  Similarity=0.007  Sum_probs=20.8

Q ss_pred             HHHhhcccceEEEeccCCCCCCCceeeEEecCCCEEEEECc
Q psy14331         27 IEAEEKRKNKVIEKVVPEPTRRANFSFLAHPDKDQLILFGG   67 (265)
Q Consensus        27 ~~~~d~~~~~w~~~~~~~p~~r~~~~~~~~~~~~~lyv~GG   67 (265)
                      +..+|..++.|..........+.-..+.+.|+++.+++.++
T Consensus        75 i~vWd~~~~~~~~~~~~~~~~~~v~~i~~~p~~~~l~~~s~  115 (371)
T d1k8kc_          75 AYVWTLKGRTWKPTLVILRINRAARCVRWAPNEKKFAVGSG  115 (371)
T ss_dssp             EEEEEEETTEEEEEEECCCCSSCEEEEEECTTSSEEEEEET
T ss_pred             EEEEeecccccccccccccccccccccccccccccceeecc
Confidence            55677777777653222222233344555555555554433

>d1kv9a2 b.70.1.1 (A:1-560) Quinoprotein alcohol dehydrogenase, N-terminal domain {Pseudomonas putida, hk5 [TaxId: 303]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: Quinoprotein alcohol dehydrogenase-like
family: Quinoprotein alcohol dehydrogenase-like
domain: Quinoprotein alcohol dehydrogenase, N-terminal domain
species: Pseudomonas putida, hk5 [TaxId: 303]

Probab=88.35  E-value=4.4  Score=33.30  Aligned_cols=71  Identities=8%  Similarity=0.047  Sum_probs=44.1

Q ss_pred             CCEEEEEcCcccCCCccccccCCceeEEEcCCC--cEEEEecCC------CCCCCcCceEEEECCEEEEEcCccCCCCcc
Q psy14331        114 KGQLWMFGGEFSSASESQFHHYKDLWVFRMGEK--KWEKIVCKD------TPPSRSGHRMIALKKHLVVFGGFHDNLREA  185 (265)
Q Consensus       114 ~~~iyv~GG~~~~~~~~~~~~~~~~~~yd~~~~--~W~~~~~~~------~p~~~~~~~~~~~~~~iyv~GG~~~~~~~~  185 (265)
                      +++||+...            .+.++.+|.+++  .|+.-+...      ..........+..++++|+...        
T Consensus        66 ~g~vyv~t~------------~~~v~AlDa~tG~~lW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~--------  125 (560)
T d1kv9a2          66 DGVIYTSMS------------WSRVIAVDAASGKELWRYDPEVAKVKARTSCCDAVNRGVALWGDKVYVGTL--------  125 (560)
T ss_dssp             TTEEEEEEG------------GGEEEEEETTTCCEEEEECCCCCGGGGGGCTTCSCCCCCEEEBTEEEEECT--------
T ss_pred             CCEEEEECC------------CCeEEEEeCCCCCEEEEECCCCCccccccccccccccCcceeCCeEEEEeC--------
Confidence            999999765            356899999887  487532211      0111122345566778777543        


Q ss_pred             ccCCceEEEEcCCC--ceEEecc
Q psy14331        186 KYYNDVHIFDLETY--AWKKIEP  206 (265)
Q Consensus       186 ~~~~~v~~y~~~~~--~W~~~~~  206 (265)
                        -..|+++|..+.  .|+....
T Consensus       126 --~g~l~Alda~tG~~~w~~~~~  146 (560)
T d1kv9a2         126 --DGRLIALDAKTGKAIWSQQTT  146 (560)
T ss_dssp             --TSEEEEEETTTCCEEEEEECS
T ss_pred             --CCEEEEEECCCCcEEeccCcc
Confidence              246899998885  4776544

>d1gena_ b.66.1.1 (A:) Gelatinase A (MMP-2), C-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 4-bladed beta-propeller
superfamily: Hemopexin-like domain
family: Hemopexin-like domain
domain: Gelatinase A (MMP-2), C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=88.07  E-value=3.1  Score=29.18  Aligned_cols=103  Identities=17%  Similarity=0.303  Sum_probs=57.5

Q ss_pred             cCCCEEEEECcEEeCCCceeeCCCcccCceEEEEeeecCC---------CCCCCccccceEEEecCCCEEEEEcCcccCC
Q psy14331         57 PDKDQLILFGGEFYDGQKFVFGSPKALDHLILMNLFVSAP---------GAPPPRCSHQMVALSADKGQLWMFGGEFSSA  127 (265)
Q Consensus        57 ~~~~~lyv~GG~~~~~~~~~~~~~~~~~~~~~yd~w~~~~---------~~p~~r~~~~~~~~~~~~~~iyv~GG~~~~~  127 (265)
                      +.++++|+|-|                +..|+|+-....+         .+|..-..--++.....++++|++-|     
T Consensus        67 ~~~~~~yffkg----------------~~~~~y~~~~~~~gyPk~i~~~g~p~~~~~iDAA~~~~~~g~~YfFkg-----  125 (200)
T d1gena_          67 PQEEKAVFFAG----------------NEYWIYSASTLERGYPKPLTSLGLPPDVQRVDAAFNWSKNKKTYIFAG-----  125 (200)
T ss_dssp             TTTTEEEEEET----------------TEEEEEETTEECTTCSEEGGGGTCCTTCCCCSEEEEETTTTEEEEEET-----
T ss_pred             CCCCeEEEecC----------------ceEEEEcCcccccCCCceehhcCCCCCccceeeEEEECCCCeEEEEeC-----
Confidence            35788999888                5677777511111         12322222223333334789999977     


Q ss_pred             CccccccCCceeEEEcCCCcEE-----EEec-C-CCCCCCcCceEEEE--CCEEEEEcCccCCCCccccCCceEEEEcCC
Q psy14331        128 SESQFHHYKDLWVFRMGEKKWE-----KIVC-K-DTPPSRSGHRMIAL--KKHLVVFGGFHDNLREAKYYNDVHIFDLET  198 (265)
Q Consensus       128 ~~~~~~~~~~~~~yd~~~~~W~-----~~~~-~-~~p~~~~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~~v~~y~~~~  198 (265)
                              +..++||..++.-.     .+.. . ++|..  -.++...  ++++|+|-|           +..++||..+
T Consensus       126 --------~~y~ryd~~~~~vd~~yPk~I~~~w~gvp~~--idAAf~~~~~g~~Yff~g-----------~~y~r~d~~~  184 (200)
T d1gena_         126 --------DKFWRYNEVKKKMDPGFPKLIADAWNAIPDN--LDAVVDLQGGGHSYFFKG-----------AYYLKLENQS  184 (200)
T ss_dssp             --------TEEEEEETTTTEECSSCCEEHHHHSSSCCSS--CSEEEECTTTCEEEEEET-----------TEEEEEETTE
T ss_pred             --------cEEEEeccccceeccCcceehhhccCCCCCC--ccEEEEecCCCEEEEEEC-----------CEEEEEECCc
Confidence                    35889998776421     1111 1 12322  2344443  578999987           3567888665


Q ss_pred             Cce
Q psy14331        199 YAW  201 (265)
Q Consensus       199 ~~W  201 (265)
                      .+.
T Consensus       185 ~~~  187 (200)
T d1gena_         185 LKS  187 (200)
T ss_dssp             EEE
T ss_pred             eEE
Confidence            443

>d1kb0a2 b.70.1.1 (A:1-573) Quinoprotein alcohol dehydrogenase, N-terminal domain {Comamonas testosteroni [TaxId: 285]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: Quinoprotein alcohol dehydrogenase-like
family: Quinoprotein alcohol dehydrogenase-like
domain: Quinoprotein alcohol dehydrogenase, N-terminal domain
species: Comamonas testosteroni [TaxId: 285]

Probab=87.95  E-value=6.2  Score=32.47  Aligned_cols=70  Identities=11%  Similarity=0.097  Sum_probs=43.7

Q ss_pred             CCEEEEEcCcccCCCccccccCCceeEEEcCCCc--EEEEecCC------CCCCCcCceEEEECCEEEEEcCccCCCCcc
Q psy14331        114 KGQLWMFGGEFSSASESQFHHYKDLWVFRMGEKK--WEKIVCKD------TPPSRSGHRMIALKKHLVVFGGFHDNLREA  185 (265)
Q Consensus       114 ~~~iyv~GG~~~~~~~~~~~~~~~~~~yd~~~~~--W~~~~~~~------~p~~~~~~~~~~~~~~iyv~GG~~~~~~~~  185 (265)
                      +++||+...            .+.++.+|.++++  |+.-....      ..........+..++++|+...        
T Consensus        77 ~g~vyv~t~------------~~~v~AlDa~TG~~~W~~~~~~~~~~~~~~~~~~~~~g~~~~~~~v~~~t~--------  136 (573)
T d1kb0a2          77 DGIMYVSAS------------WSVVHAIDTRTGNRIWTYDPQIDRSTGFKGCCDVVNRGVALWKGKVYVGAW--------  136 (573)
T ss_dssp             TTEEEEECG------------GGCEEEEETTTTEEEEEECCCCCGGGGGGSSSCSCCCCCEEETTEEEEECT--------
T ss_pred             CCEEEEECC------------CCeEEEEeCCCCCeEEEeCCCCCcccccccccccccccceEECCcEEEEec--------
Confidence            899998754            3568999998874  87532221      0111222345666888877532        


Q ss_pred             ccCCceEEEEcCCCc--eEEec
Q psy14331        186 KYYNDVHIFDLETYA--WKKIE  205 (265)
Q Consensus       186 ~~~~~v~~y~~~~~~--W~~~~  205 (265)
                        -..++++|..+.+  |+.-.
T Consensus       137 --~g~l~alda~tG~~~W~~~~  156 (573)
T d1kb0a2         137 --DGRLIALDAATGKEVWHQNT  156 (573)
T ss_dssp             --TSEEEEEETTTCCEEEEEET
T ss_pred             --ccceeeeccccccceecccC
Confidence              2468899988864  87654

>d1nr0a1 b.69.4.1 (A:2-312) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=87.60  E-value=4.2  Score=30.16  Aligned_cols=99  Identities=12%  Similarity=0.044  Sum_probs=46.1

Q ss_pred             CCEEEEEcCcccCCCccccccCCceeEEEcCCCcEEEEecCCCCCCCcCceEEEE-CCEEEEEcCccCCCCccccCCceE
Q psy14331        114 KGQLWMFGGEFSSASESQFHHYKDLWVFRMGEKKWEKIVCKDTPPSRSGHRMIAL-KKHLVVFGGFHDNLREAKYYNDVH  192 (265)
Q Consensus       114 ~~~iyv~GG~~~~~~~~~~~~~~~~~~yd~~~~~W~~~~~~~~p~~~~~~~~~~~-~~~iyv~GG~~~~~~~~~~~~~v~  192 (265)
                      +..+++.|+.+           ..+..||..+.+-......   ....-.++... ++.+++.|+.+         ..+.
T Consensus       158 ~~~~l~sgs~d-----------~~i~i~d~~~~~~~~~~~~---~~~~i~~v~~~p~~~~l~~~~~d---------~~v~  214 (311)
T d1nr0a1         158 RPFRIISGSDD-----------NTVAIFEGPPFKFKSTFGE---HTKFVHSVRYNPDGSLFASTGGD---------GTIV  214 (311)
T ss_dssp             SSCEEEEEETT-----------SCEEEEETTTBEEEEEECC---CSSCEEEEEECTTSSEEEEEETT---------SCEE
T ss_pred             ceeeecccccc-----------ccccccccccccccccccc---ccccccccccCcccccccccccc---------cccc
Confidence            34456666642           3477889877653332211   11111122222 45666666643         3477


Q ss_pred             EEEcCCCceEEeccCCCCCCCC---CCceEEEeCCCeEEEEcCccc
Q psy14331        193 IFDLETYAWKKIEPLGAGPAPR---SGCQMAATPDGKILISGGYSK  235 (265)
Q Consensus       193 ~y~~~~~~W~~~~~~~~~p~~~---~~~~~~~~~~~~iyi~GG~~~  235 (265)
                      .||..+.+-...-.........   .-.+++...+++.++.||.+.
T Consensus       215 ~~d~~~~~~~~~~~~~~~~~~~h~~~V~~~~~s~~~~~l~tgs~Dg  260 (311)
T d1nr0a1         215 LYNGVDGTKTGVFEDDSLKNVAHSGSVFGLTWSPDGTKIASASADK  260 (311)
T ss_dssp             EEETTTCCEEEECBCTTSSSCSSSSCEEEEEECTTSSEEEEEETTS
T ss_pred             ccccccccccccccccccccccccccccccccCCCCCEEEEEeCCC
Confidence            8888765433221111001100   112223334567777777653

>d1kb0a2 b.70.1.1 (A:1-573) Quinoprotein alcohol dehydrogenase, N-terminal domain {Comamonas testosteroni [TaxId: 285]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: Quinoprotein alcohol dehydrogenase-like
family: Quinoprotein alcohol dehydrogenase-like
domain: Quinoprotein alcohol dehydrogenase, N-terminal domain
species: Comamonas testosteroni [TaxId: 285]

Probab=87.50  E-value=6.5  Score=32.30  Aligned_cols=112  Identities=11%  Similarity=0.164  Sum_probs=64.5

Q ss_pred             CCEEEEECcEEeCCCceeeCCCcccCceEEEEe------eecCCCCCCC--------ccccceEEEecCCCEEEEEcCcc
Q psy14331         59 KDQLILFGGEFYDGQKFVFGSPKALDHLILMNL------FVSAPGAPPP--------RCSHQMVALSADKGQLWMFGGEF  124 (265)
Q Consensus        59 ~~~lyv~GG~~~~~~~~~~~~~~~~~~~~~yd~------w~~~~~~p~~--------r~~~~~~~~~~~~~~iyv~GG~~  124 (265)
                      +++||+...               .+.++.+|.      |......+..        ......+..   ++++|+...  
T Consensus        77 ~g~vyv~t~---------------~~~v~AlDa~TG~~~W~~~~~~~~~~~~~~~~~~~~~g~~~~---~~~v~~~t~--  136 (573)
T d1kb0a2          77 DGIMYVSAS---------------WSVVHAIDTRTGNRIWTYDPQIDRSTGFKGCCDVVNRGVALW---KGKVYVGAW--  136 (573)
T ss_dssp             TTEEEEECG---------------GGCEEEEETTTTEEEEEECCCCCGGGGGGSSSCSCCCCCEEE---TTEEEEECT--
T ss_pred             CCEEEEECC---------------CCeEEEEeCCCCCeEEEeCCCCCcccccccccccccccceEE---CCcEEEEec--
Confidence            899999766               467888887      7765443321        111223333   778777643  


Q ss_pred             cCCCccccccCCceeEEEcCCCc--EEEEecCCCCCC--CcCceEEEECCEEEEEcCccCCCCccccCCceEEEEcCCCc
Q psy14331        125 SSASESQFHHYKDLWVFRMGEKK--WEKIVCKDTPPS--RSGHRMIALKKHLVVFGGFHDNLREAKYYNDVHIFDLETYA  200 (265)
Q Consensus       125 ~~~~~~~~~~~~~~~~yd~~~~~--W~~~~~~~~p~~--~~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~v~~y~~~~~~  200 (265)
                                -..++.+|..+++  |+.-.... +..  .......+.++.+++ |+.....   .....|..||..+.+
T Consensus       137 ----------~g~l~alda~tG~~~W~~~~~~~-~~~~~~~~~~p~v~~~~viv-g~~~~~~---~~~G~v~a~D~~TG~  201 (573)
T d1kb0a2         137 ----------DGRLIALDAATGKEVWHQNTFEG-QKGSLTITGAPRVFKGKVII-GNGGAEY---GVRGYITAYDAETGE  201 (573)
T ss_dssp             ----------TSEEEEEETTTCCEEEEEETTTT-CCSSCBCCSCCEEETTEEEE-CCBCTTT---CCBCEEEEEETTTCC
T ss_pred             ----------ccceeeeccccccceecccCccC-CcceEEeecceEEEeccEEE-eeccccc---cccceEEEEecCCcc
Confidence                      2458899988875  76543221 111  112234556777766 4432221   224679999999865


Q ss_pred             --eEEec
Q psy14331        201 --WKKIE  205 (265)
Q Consensus       201 --W~~~~  205 (265)
                        |+.-.
T Consensus       202 ~~W~~~t  208 (573)
T d1kb0a2         202 RKWRWFS  208 (573)
T ss_dssp             EEEEEES
T ss_pred             ceeeeee
Confidence              87543

>d1pbyb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Quinohemoprotein amine dehydrogenase B chain
domain: Quinohemoprotein amine dehydrogenase B chain
species: Paracoccus denitrificans [TaxId: 266]

Probab=87.47  E-value=4  Score=29.83  Aligned_cols=108  Identities=10%  Similarity=-0.022  Sum_probs=53.1

Q ss_pred             HHHhhcccceEEEeccCCCCCCCceeeEEecCCCEEEEECcEEeCCCceeeCCCcccCceEEEEe------ee-cCCCCC
Q psy14331         27 IEAEEKRKNKVIEKVVPEPTRRANFSFLAHPDKDQLILFGGEFYDGQKFVFGSPKALDHLILMNL------FV-SAPGAP   99 (265)
Q Consensus        27 ~~~~d~~~~~w~~~~~~~p~~r~~~~~~~~~~~~~lyv~GG~~~~~~~~~~~~~~~~~~~~~yd~------w~-~~~~~p   99 (265)
                      +..+|..+.+-..............++++-|+++.+|+.|..              -..+..||.      .. ......
T Consensus        13 v~v~D~~s~~~~~~i~~~~~~~~~~~i~~spDg~~l~v~~~~--------------~~~v~v~D~~t~~~~~~~~~~~~~   78 (337)
T d1pbyb_          13 LVVIDTEKMAVDKVITIADAGPTPMVPMVAPGGRIAYATVNK--------------SESLVKIDLVTGETLGRIDLSTPE   78 (337)
T ss_dssp             EEEEETTTTEEEEEEECTTCTTCCCCEEECTTSSEEEEEETT--------------TTEEEEEETTTCCEEEEEECCBTT
T ss_pred             EEEEECCCCeEEEEEECCCCCCCccEEEECCCCCEEEEEECC--------------CCeEEEEECCCCcEEEEEecCCCc
Confidence            566788777754423222223334456666778889988752              356788887      11 111111


Q ss_pred             CCccccceEEEecCCCEEEEEcCcccCCCccccccCCceeEEEcCCCcE
Q psy14331        100 PPRCSHQMVALSADKGQLWMFGGEFSSASESQFHHYKDLWVFRMGEKKW  148 (265)
Q Consensus       100 ~~r~~~~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~~~yd~~~~~W  148 (265)
                      ........+.+...++.+|+.+................+..+|..+.+=
T Consensus        79 ~~~~~~~~v~~s~dg~~l~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~  127 (337)
T d1pbyb_          79 ERVKSLFGAALSPDGKTLAIYESPVRLELTHFEVQPTRVALYDAETLSR  127 (337)
T ss_dssp             EEEECTTCEEECTTSSEEEEEEEEEEECSSCEEECCCEEEEEETTTTEE
T ss_pred             ccccceeeEEEcCCCcEEEEeecCCcceeeeccccccceeeccccCCeE
Confidence            1111222333444455666664432111110001235567788877653

>d2ovrb2 b.69.4.1 (B:2365-2706) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD repeat-containing protein 7, FBXW7
species: Human (Homo sapiens) [TaxId: 9606]

Probab=87.34  E-value=4  Score=29.69  Aligned_cols=56  Identities=13%  Similarity=0.217  Sum_probs=31.9

Q ss_pred             CceeEEEcCCCcEEEEecCCCCCCCcCceEEEECCEEEEEcCccCCCCccccCCceEEEEcCCCce
Q psy14331        136 KDLWVFRMGEKKWEKIVCKDTPPSRSGHRMIALKKHLVVFGGFHDNLREAKYYNDVHIFDLETYAW  201 (265)
Q Consensus       136 ~~~~~yd~~~~~W~~~~~~~~p~~~~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~v~~y~~~~~~W  201 (265)
                      ..+..||..+.+-...-... ........+...++.+++.|+.+         ..|..||+.+.+-
T Consensus       237 ~~i~iwd~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~s~s~D---------g~i~iwd~~tg~~  292 (342)
T d2ovrb2         237 STVKIWDIKTGQCLQTLQGP-NKHQSAVTCLQFNKNFVITSSDD---------GTVKLWDLKTGEF  292 (342)
T ss_dssp             SCEEEEETTTCCEEEEECST-TSCSSCEEEEEECSSEEEEEETT---------SEEEEEETTTCCE
T ss_pred             CEEEEEeccccccccccccc-ceeeeceeecccCCCeeEEEcCC---------CEEEEEECCCCCE
Confidence            45888898776543332211 11222223344466677777753         3588899988765

>d1pgua1 b.69.4.1 (A:2-326) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=82.41  E-value=7.6  Score=28.69  Aligned_cols=66  Identities=15%  Similarity=0.187  Sum_probs=36.8

Q ss_pred             CCEEEEEcCcccCCCccccccCCceeEEEcCCCcEEE-EecCCCCCCCcC--ceEEEECCEEEEEcCccCCCCccccCCc
Q psy14331        114 KGQLWMFGGEFSSASESQFHHYKDLWVFRMGEKKWEK-IVCKDTPPSRSG--HRMIALKKHLVVFGGFHDNLREAKYYND  190 (265)
Q Consensus       114 ~~~iyv~GG~~~~~~~~~~~~~~~~~~yd~~~~~W~~-~~~~~~p~~~~~--~~~~~~~~~iyv~GG~~~~~~~~~~~~~  190 (265)
                      .+.+++.|+.+           ..+..||..+++-.. +....  .+...  .+....+++.++.|+.+         ..
T Consensus       217 ~~~~l~s~~~d-----------~~i~iwd~~~~~~~~~l~~~~--~~v~~~~~s~~~~dg~~l~s~s~D---------~~  274 (325)
T d1pgua1         217 SGEFVITVGSD-----------RKISCFDGKSGEFLKYIEDDQ--EPVQGGIFALSWLDSQKFATVGAD---------AT  274 (325)
T ss_dssp             TCCEEEEEETT-----------CCEEEEETTTCCEEEECCBTT--BCCCSCEEEEEESSSSEEEEEETT---------SE
T ss_pred             cceeccccccc-----------cceeeeeeccccccccccccc--cccccceeeeeccCCCEEEEEeCC---------Ce
Confidence            46777777643           348889988776432 22111  12222  12222355666777653         35


Q ss_pred             eEEEEcCCCce
Q psy14331        191 VHIFDLETYAW  201 (265)
Q Consensus       191 v~~y~~~~~~W  201 (265)
                      |..||+.+.+-
T Consensus       275 i~iwd~~~~~~  285 (325)
T d1pgua1         275 IRVWDVTTSKC  285 (325)
T ss_dssp             EEEEETTTTEE
T ss_pred             EEEEECCCCCE
Confidence            77889988764

>d1q7fa_ b.68.9.1 (A:) Brain tumor cg10719-pa {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: NHL repeat
family: NHL repeat
domain: Brain tumor cg10719-pa
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=81.40  E-value=7.8  Score=28.13  Aligned_cols=95  Identities=11%  Similarity=0.112  Sum_probs=50.7

Q ss_pred             CCEEEEEcCcccCCCccccccCCceeEEEcCCCcEEEEecCCCCCCCcCceEEEE-CCEEEEEcCccCCCCccccCCceE
Q psy14331        114 KGQLWMFGGEFSSASESQFHHYKDLWVFRMGEKKWEKIVCKDTPPSRSGHRMIAL-KKHLVVFGGFHDNLREAKYYNDVH  192 (265)
Q Consensus       114 ~~~iyv~GG~~~~~~~~~~~~~~~~~~yd~~~~~W~~~~~~~~p~~~~~~~~~~~-~~~iyv~GG~~~~~~~~~~~~~v~  192 (265)
                      ++.||+....           ...+.+||........+....  ....-.++++. ++.|||....+        ...|.
T Consensus       167 ~g~i~v~d~~-----------~~~V~~~d~~G~~~~~~g~~g--~~~~P~giavD~~G~i~Vad~~~--------~~~v~  225 (279)
T d1q7fa_         167 KQEIFISDNR-----------AHCVKVFNYEGQYLRQIGGEG--ITNYPIGVGINSNGEILIADNHN--------NFNLT  225 (279)
T ss_dssp             SSEEEEEEGG-----------GTEEEEEETTCCEEEEESCTT--TSCSEEEEEECTTCCEEEEECSS--------SCEEE
T ss_pred             ceeEEeeecc-----------ccceeeeecCCceeeeecccc--cccCCcccccccCCeEEEEECCC--------CcEEE
Confidence            5789988654           356889998776555553221  11112233443 56788864321        12477


Q ss_pred             EEEcCCCceEEeccCCCCCCCCCCceEEEeCCCeEEEEcC
Q psy14331        193 IFDLETYAWKKIEPLGAGPAPRSGCQMAATPDGKILISGG  232 (265)
Q Consensus       193 ~y~~~~~~W~~~~~~~~~p~~~~~~~~~~~~~~~iyi~GG  232 (265)
                      +|++.-.--..+......+   .-+.+++-.++.|||..+
T Consensus       226 ~f~~~G~~~~~~~~~~~~~---~p~~vav~~dG~l~V~~~  262 (279)
T d1q7fa_         226 IFTQDGQLISALESKVKHA---QCFDVALMDDGSVVLASK  262 (279)
T ss_dssp             EECTTSCEEEEEEESSCCS---CEEEEEEETTTEEEEEET
T ss_pred             EECCCCCEEEEEeCCCCCC---CEeEEEEeCCCcEEEEeC
Confidence            8886543212233221111   224555566788888643

>d1kv9a2 b.70.1.1 (A:1-560) Quinoprotein alcohol dehydrogenase, N-terminal domain {Pseudomonas putida, hk5 [TaxId: 303]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: Quinoprotein alcohol dehydrogenase-like
family: Quinoprotein alcohol dehydrogenase-like
domain: Quinoprotein alcohol dehydrogenase, N-terminal domain
species: Pseudomonas putida, hk5 [TaxId: 303]

Probab=80.90  E-value=13  Score=30.33  Aligned_cols=119  Identities=12%  Similarity=0.128  Sum_probs=65.7

Q ss_pred             eeeEEecCCCEEEEECcEEeCCCceeeCCCcccCceEEEEe------eecCCCCCCC--------ccccceEEEecCCCE
Q psy14331         51 FSFLAHPDKDQLILFGGEFYDGQKFVFGSPKALDHLILMNL------FVSAPGAPPP--------RCSHQMVALSADKGQ  116 (265)
Q Consensus        51 ~~~~~~~~~~~lyv~GG~~~~~~~~~~~~~~~~~~~~~yd~------w~~~~~~p~~--------r~~~~~~~~~~~~~~  116 (265)
                      .+-+++  +++||+...               .+.++.+|.      |+..+..+..        ......+..   +++
T Consensus        60 stPiv~--~g~vyv~t~---------------~~~v~AlDa~tG~~lW~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~  119 (560)
T d1kv9a2          60 ATPLFH--DGVIYTSMS---------------WSRVIAVDAASGKELWRYDPEVAKVKARTSCCDAVNRGVALW---GDK  119 (560)
T ss_dssp             CCCEEE--TTEEEEEEG---------------GGEEEEEETTTCCEEEEECCCCCGGGGGGCTTCSCCCCCEEE---BTE
T ss_pred             eCCEEE--CCEEEEECC---------------CCeEEEEeCCCCCEEEEECCCCCccccccccccccccCccee---CCe
Confidence            344554  999998766               467778887      7654433221        111222223   677


Q ss_pred             EEEEcCcccCCCccccccCCceeEEEcCCCc--EEEEecCCCCCCCcCceEEEECCEEEEEcCccCCCCccccCCceEEE
Q psy14331        117 LWMFGGEFSSASESQFHHYKDLWVFRMGEKK--WEKIVCKDTPPSRSGHRMIALKKHLVVFGGFHDNLREAKYYNDVHIF  194 (265)
Q Consensus       117 iyv~GG~~~~~~~~~~~~~~~~~~yd~~~~~--W~~~~~~~~p~~~~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~v~~y  194 (265)
                      ||+...            -..++.+|..+++  |+.......+.......-.+.++.+++ |+.....   .....|..|
T Consensus       120 v~~~~~------------~g~l~Alda~tG~~~w~~~~~~~~~~~~~~~~p~v~~~~viv-g~~~~~~---~~~G~v~a~  183 (560)
T d1kv9a2         120 VYVGTL------------DGRLIALDAKTGKAIWSQQTTDPAKPYSITGAPRVVKGKVII-GNGGAEY---GVRGFVSAY  183 (560)
T ss_dssp             EEEECT------------TSEEEEEETTTCCEEEEEECSCTTSSCBCCSCCEEETTEEEE-CCBCTTT---CCBCEEEEE
T ss_pred             EEEEeC------------CCEEEEEECCCCcEEeccCccCcccceeeeeeeeeecCcccc-cccceec---cccceEEEE
Confidence            777643            2458899988874  765432211111222344556777776 3322211   223578999


Q ss_pred             EcCCCc--eEEec
Q psy14331        195 DLETYA--WKKIE  205 (265)
Q Consensus       195 ~~~~~~--W~~~~  205 (265)
                      |..+.+  |+.-.
T Consensus       184 D~~TG~~~W~~~t  196 (560)
T d1kv9a2         184 DADTGKLAWRFYT  196 (560)
T ss_dssp             ETTTCCEEEEEES
T ss_pred             ECCCceEEeeeee
Confidence            999864  76543

>d1k8kc_ b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taurus) [TaxId: 9913]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Arp2/3 complex 41 kDa subunit ARPC1
species: Cow (Bos taurus) [TaxId: 9913]

Probab=80.62  E-value=9.6  Score=28.67  Aligned_cols=99  Identities=12%  Similarity=0.199  Sum_probs=47.3

Q ss_pred             CCEEEEEcCcccCCCccccccCCceeEEEcCCCcEEEEecCCCCCCCcCceEEEE--CCEEEEEcCccCCCCccccCCce
Q psy14331        114 KGQLWMFGGEFSSASESQFHHYKDLWVFRMGEKKWEKIVCKDTPPSRSGHRMIAL--KKHLVVFGGFHDNLREAKYYNDV  191 (265)
Q Consensus       114 ~~~iyv~GG~~~~~~~~~~~~~~~~~~yd~~~~~W~~~~~~~~p~~~~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~~v  191 (265)
                      ++++++.||.+           ..+.++|+.++.|.......  ........+..  ++..++.|+.++.       -.+
T Consensus        62 ~~~~l~s~s~D-----------~~i~vWd~~~~~~~~~~~~~--~~~~~v~~i~~~p~~~~l~~~s~d~~-------i~i  121 (371)
T d1k8kc_          62 DSNRIVTCGTD-----------RNAYVWTLKGRTWKPTLVIL--RINRAARCVRWAPNEKKFAVGSGSRV-------ISI  121 (371)
T ss_dssp             TTTEEEEEETT-----------SCEEEEEEETTEEEEEEECC--CCSSCEEEEEECTTSSEEEEEETTSS-------EEE
T ss_pred             CCCEEEEEECC-----------CeEEEEeecccccccccccc--cccccccccccccccccceeecccCc-------cee
Confidence            45666666642           34778888888888765442  11222222222  4555566654322       234


Q ss_pred             EEEEcCCCceEEeccCCCCCCCCCCceEEEeCCCeEEEEcCcc
Q psy14331        192 HIFDLETYAWKKIEPLGAGPAPRSGCQMAATPDGKILISGGYS  234 (265)
Q Consensus       192 ~~y~~~~~~W~~~~~~~~~p~~~~~~~~~~~~~~~iyi~GG~~  234 (265)
                      +.++.....+.......  +..-.-.++....++++++.|+.+
T Consensus       122 ~~~~~~~~~~~~~~~~~--~~~~~v~~v~~~p~~~~l~s~s~D  162 (371)
T d1k8kc_         122 CYFEQENDWWVCKHIKK--PIRSTVLSLDWHPNSVLLAAGSCD  162 (371)
T ss_dssp             EEEETTTTEEEEEEECT--TCCSCEEEEEECTTSSEEEEEETT
T ss_pred             eeeeccccccccccccc--ccccccccccccccccceeccccC
Confidence            44554555554443321  111111222233355666666543