Psyllid ID: psy14335

---

Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270---
Protein Sequence
MSRSDGLTDLRLSDLLRTLVLPSTVAGHGTDEEFASLCFAFGLELDEVTSEKQIISKEQGADNSKGASEDVIYRIDVPANRYDLLCLEGLYNGLMTSQIRPHAVAAVLRNITLNEERYASFIELQDKLHQNICRKRTLVAIGTHDLDTIKGPFIYDAKPPSEIRFQPLNQTKEYSGTEIMDLYATSQIRPHAVAAVLRNITLNEERYASFIELQDKLHQNICRKRTLVAIGTHDLDTIKGPFIYDAKPPSEIRFQPLNQTKEYTGTEIMDLYA
Secondary Structure (PSIPRED)
ccccccccccccHHHHHHHHHHHHHcccccHHHHHHHHHHHcccccccccHHHHHHHHcccccccccccccEEEEEEccccccccccccEEEEccccccccEEEEEEEEcccccHHHHHHHHHHHHHHHHHHHHcccEEEEEcccccccccccEEEEccccccEEEEccccccccccHHHHHHccccccccEEEcEEccccccHHHHHHHHHHHHHHHHHHHcccEEEEEEEEEcccccccEEEEEccccccEEEEccccccccHHHHHHHcc
Secondary Structure Prediction (SSPRO)
cccccccccccHHHHHHHHHHHHHHcccccHHHHHHHHHHccEEEcccccHHHHHHHcccccccccccccEEEEEEcccccHHHHHHHHHHHHHHHcccccEEEEEEEEccEccHHHHHHHHHHHHHHHHHHHHcccEEEEcccccccccccEEEEccccccEEEEEccccccccHHHHHHHccccccccHEEEEEEccccccHHHHHHHHHHHHHHHHHHHHcccEEEEEccccccccccEEEEccccccEEEEEccccccccHHHHHHHHc
Coil and Loop (DISEMBL)
msrsdgltdlrLSDLLRTlvlpstvaghgtdeEFASLCFAFGleldevtsEKQIISKeqgadnskgasedviyridvpanryDLLCLEGLynglmtsqiRPHAVAAVLRNITLNEERYASFIELQDKLHQNICRKRTLVAigthdldtikgpfiydakppseirfqplnqtkeysgteimdlyatsqirPHAVAAVLRNITLNEERYASFIELQDKLHQNICRKRTLVAigthdldtikgpfiydakppseirfqplnqtkeytgteimdlya
Flexible Loop (DISEMBL)
msrsdgltdlrlsdLLRTLVLPSTVAGHGTDEEFASLCFAFGLELDEVTSEKQIISkeqgadnskgaseDVIYRIDVPANRYDLLCLEGLYNGLMTSQIRPHAVAAVLRNITLNEERYASFIELQDKLHQNICRKRTLVAIGTHDLDTIKGPFIYDAKPPSEIRFQPLNQTKEYSGTEIMDLYATSQIRPHAVAAVLRNITLNEERYASFIELQDKLHQNICRKRTLVAIGTHDLDTIKGPFIYDAkppseirfqplnqtkeytgteimdlya
Low Complexity Region (SEG)
MsrsdgltdlrlsdllrtlvlPSTVAGHGTDEEFASLCFAFGLELDEVTSEKQIISKEQGADNSKGASEDVIYRIDVPANRYDLLCLEGLYNGLMTSQIRPHAVAAVLRNITLNEERYASFIELQDKLHQNICRKRTLVAIGTHDLDTIKGPFIYDAKPPSEIRFQPLNQTKEYSGTEIMDLYATSQIRPHAVAAVLRNITLNEERYASFIELQDKLHQNICRKRTLVAIGTHDLDTIKGPFIYDAKPPSEIRFQPLNQTKEYTGTEIMDLYA
Disordered region (IsUnstruct)
*********LRLSDLLRTLVLPSTVAGHGTDEEFASLCFAFGLELDEVT********************DVIYRIDVPANRYDLLCLEGLYNGLMTSQIRPHAVAAVLRNITLNEERYASFIELQDKLHQNICRKRTLVAIGTHDLDTIKGPFIYDAKPPSEIRFQPLNQTKEYSGTEIMDLYATSQIRPHAVAAVLRNITLNEERYASFIELQDKLHQNICRKRTLVAIGTHDLDTIKGPFIYDAK**************************
Disordered Region (DISOPRED)
****DGL*DLRLSDLLRTLVLPSTVAGHGTDEEFASLCFAFGLELDEVTSEKQII**************DVIYRIDVPANRYDLLCLEGLYNGLMTSQIRPHAVAAVLRNITLNEERYASFIELQDKLHQNICRKRTLVAIGTHDLDTIKGPFIYDAKPPSEIRFQPLNQTKEYSGTEIMDLYATSQIRPHAVAAVLRNITLNEERYASFIELQDKLHQNICRKRTLVAIGTHDLDTIKGPFIYDAKPPSEIRFQPLNQTKEYTGTEIMDLY*
Disordered Region (DISEMBL)
MSRSDGLTDLRLSDLLRTLVLPSTVAGHGTDEEFASLCFAFGLELDEVTSEKQI*************SEDVIYRIDVPANRYDLLCLEGLYNGLMTSQIRPHAVAAVLRNITLNEERYASFIELQDKLHQNICRKRTLVAIGTHDLDTIKGPFIYDAKPPSEIRFQPLNQTKEYSGTEIMDLYATSQIRPHAVAAVLRNITLNEERYASFIELQDKLHQNICRKRTLVAIGTHDLDTIKGPFIYDAKPPSEIRFQPLNQTKEYTGTEIMDLYA
Disordered Region (DISPRO)
******LTDLRLSDLLRTLVLPSTVAGHGTDEEFASLCFAFGLELDEVTSEKQIISKE*********SEDVIYRIDVPANRYDLLCLEGLYNGLMTSQIRPHAVAAVLRNITLNEERYASFIELQDKLHQNICRKRTLVAIGTHDLDTIKGPFIYDAKPPSEIRFQPLNQTKEYSGTEIMDLYATSQIRPHAVAAVLRNITLNEERYASFIELQDKLHQNICRKRTLVAIGTHDLDTIKGPFIYDAKPPSEIRFQPLNQTKEYTGTEIMDLYA
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
oooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MSRSDGLTDLRLSDLLRTLVLPSTVAGHGTDEEFASLCFAFGLELDEVTSEKQIISKEQGADNSKGASEDVIYRIDVPANRYDLLCLEGLYNGLMTSQIRPHAVAAVLRNITLNEERYASFIELQDKLHQNICRKRTLVAIGTHDLDTIKGPFIYDAKPPSEIRFQPLNQTKEYSGTEIMDLYATSQIRPHAVAAVLRNITLNEERYASFIELQDKLHQNICRKRTLVAIGTHDLDTIKGPFIYDAKPPSEIRFQPLNQTKEYTGTEIMDLYA
Positional Conservation
no confident homologs detected

---

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	273	2.2.26 [Sep-21-2011]
Q9VCA5	589	Probable phenylalanine--t	yes	N/A	0.571	0.264	0.603	2e-59
Q9WUA2	589	Phenylalanine--tRNA ligas	yes	N/A	0.593	0.275	0.594	4e-59
Q5R7F7	589	Phenylalanine--tRNA ligas	yes	N/A	0.593	0.275	0.594	2e-58
Q9NSD9	589	Phenylalanine--tRNA ligas	yes	N/A	0.593	0.275	0.594	2e-58
Q19713	591	Phenylalanine--tRNA ligas	yes	N/A	0.571	0.263	0.513	3e-49
Q9SGE9	598	Probable phenylalanine--t	yes	N/A	0.571	0.260	0.502	4e-45
Q550D2	617	Phenylalanine--tRNA ligas	yes	N/A	0.571	0.252	0.491	6e-44
P15624	595	Phenylalanine--tRNA ligas	yes	N/A	0.538	0.247	0.459	7e-41
O13432	592	Phenylalanine--tRNA ligas	N/A	N/A	0.523	0.241	0.469	2e-38
O42849	589	Phenylalanine--tRNA ligas	yes	N/A	0.542	0.251	0.453	2e-38

>sp|Q9VCA5|SYFB_DROME Probable phenylalanine--tRNA ligase beta subunit OS=Drosophila melanogaster GN=CG5706 PE=2 SV=1

 Score =  229 bits (583), Expect = 2e-59,   Method: Compositional matrix adjust.
 Identities = 111/184 (60%), Positives = 136/184 (73%), Gaps = 28/184 (15%)

Query: 30  TDEEFASLCFAFGLELDEVTSEKQIISKEQG-ADNSKGASEDVIYRIDVPANRYDLLCLE 88
           TD+EF  LCFAFGLELDEVT+EKQ+++KEQG    +  ASE++IYRID+PANRYDLLCLE
Sbjct: 20  TDDEFQDLCFAFGLELDEVTTEKQMLTKEQGDVAAAANASEEIIYRIDIPANRYDLLCLE 79

Query: 89  GLYNGLM---------------------------TSQIRPHAVAAVLRNITLNEERYASF 121
           GL  GL+                           T+QIRP+AVAAVLRN+T  +  Y SF
Sbjct: 80  GLVTGLLVFQGKLKPPKFQFVELAKRQVLKIDPSTAQIRPYAVAAVLRNVTFTQASYNSF 139

Query: 122 IELQDKLHQNICRKRTLVAIGTHDLDTIKGPFIYDAKPPSEIRFQPLNQTKEYSGTEIMD 181
           I+LQDKLHQNICRKRTLVAIGTHDLDT++GPF Y+A  P +I+F+PLNQTKE +G+E+MD
Sbjct: 140 IDLQDKLHQNICRKRTLVAIGTHDLDTLQGPFSYEALAPDQIKFKPLNQTKEMTGSELMD 199

Query: 182 LYAT 185
            Y+T
Sbjct: 200 FYST 203

Drosophila melanogaster (taxid: 7227)
EC: 6EC: .EC: 1EC: .EC: 1EC: .EC: 2EC: 0

>sp|Q9WUA2|SYFB_MOUSE Phenylalanine--tRNA ligase beta subunit OS=Mus musculus GN=Farsb PE=2 SV=2

 Score =  228 bits (581), Expect = 4e-59,   Method: Compositional matrix adjust.
 Identities = 113/190 (59%), Positives = 134/190 (70%), Gaps = 28/190 (14%)

Query: 30  TDEEFASLCFAFGLELDEVTSEKQIISKEQGADNSKGASEDVIYRIDVPANRYDLLCLEG 89
           TDEEF  LCF FGLELDE+TSEKQIISKEQG   ++GAS+ V+Y+IDVPANRYDLLCLEG
Sbjct: 20  TDEEFDELCFEFGLELDEITSEKQIISKEQGHGKAQGASDVVLYKIDVPANRYDLLCLEG 79

Query: 90  LYNGLM----------------------------TSQIRPHAVAAVLRNITLNEERYASF 121
           L  GL                             T+++RP AVAAVLRNI   ++RY SF
Sbjct: 80  LARGLQVFKERIKAPVYKRVMPKGDIQKLVITEETAKVRPFAVAAVLRNIKFTKDRYDSF 139

Query: 122 IELQDKLHQNICRKRTLVAIGTHDLDTIKGPFIYDAKPPSEIRFQPLNQTKEYSGTEIMD 181
           IELQ+KLHQNICRKR LVAIGTHDLDT+ GPF Y AK PS+I+F+PLN+TKEY+  E+M+
Sbjct: 140 IELQEKLHQNICRKRALVAIGTHDLDTLSGPFTYTAKRPSDIKFKPLNKTKEYTACELMN 199

Query: 182 LYATSQIRPH 191
           +Y T     H
Sbjct: 200 IYKTDNHLKH 209

Mus musculus (taxid: 10090)

EC: 6

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: 2

EC: 0

>sp|Q5R7F7|SYFB_PONAB Phenylalanine--tRNA ligase beta subunit OS=Pongo abelii GN=FARSB PE=2 SV=1

 Score =  226 bits (575), Expect = 2e-58,   Method: Compositional matrix adjust.
 Identities = 113/190 (59%), Positives = 133/190 (70%), Gaps = 28/190 (14%)

Query: 30  TDEEFASLCFAFGLELDEVTSEKQIISKEQGADNSKGASEDVIYRIDVPANRYDLLCLEG 89
           TDEEF  LCF FGLELDE+TSEK+IISKEQG   + GAS+ V+Y+IDVPANRYDLLCLEG
Sbjct: 20  TDEEFDELCFEFGLELDEITSEKEIISKEQGNVKAAGASDVVLYKIDVPANRYDLLCLEG 79

Query: 90  LYNGLM----------------------------TSQIRPHAVAAVLRNITLNEERYASF 121
           L  GL                             T++IRP AVAAVLRNI   ++RY SF
Sbjct: 80  LVRGLQVFKERIKAPVYKRVMPDGKIQKLIITEETAKIRPFAVAAVLRNIKFTKDRYDSF 139

Query: 122 IELQDKLHQNICRKRTLVAIGTHDLDTIKGPFIYDAKPPSEIRFQPLNQTKEYSGTEIMD 181
           IELQ+KLHQNICRKR LVAIGTHDLDT+ GPF Y AK PS+I+F+PLN+TKEY+  E+M+
Sbjct: 140 IELQEKLHQNICRKRALVAIGTHDLDTLSGPFTYTAKRPSDIKFKPLNKTKEYTACELMN 199

Query: 182 LYATSQIRPH 191
           +Y T     H
Sbjct: 200 IYKTDNHLKH 209

Pongo abelii (taxid: 9601)

EC: 6

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: 2

EC: 0

>sp|Q9NSD9|SYFB_HUMAN Phenylalanine--tRNA ligase beta subunit OS=Homo sapiens GN=FARSB PE=1 SV=3

 Score =  225 bits (574), Expect = 2e-58,   Method: Compositional matrix adjust.
 Identities = 113/190 (59%), Positives = 133/190 (70%), Gaps = 28/190 (14%)

Query: 30  TDEEFASLCFAFGLELDEVTSEKQIISKEQGADNSKGASEDVIYRIDVPANRYDLLCLEG 89
           TDEEF  LCF FGLELDE+TSEK+IISKEQG   + GAS+ V+Y+IDVPANRYDLLCLEG
Sbjct: 20  TDEEFDELCFEFGLELDEITSEKEIISKEQGNVKAAGASDVVLYKIDVPANRYDLLCLEG 79

Query: 90  LYNGLM----------------------------TSQIRPHAVAAVLRNITLNEERYASF 121
           L  GL                             T++IRP AVAAVLRNI   ++RY SF
Sbjct: 80  LVRGLQVFKERIKAPVYKRVMPDGKIQKLIITEETAKIRPFAVAAVLRNIKFTKDRYDSF 139

Query: 122 IELQDKLHQNICRKRTLVAIGTHDLDTIKGPFIYDAKPPSEIRFQPLNQTKEYSGTEIMD 181
           IELQ+KLHQNICRKR LVAIGTHDLDT+ GPF Y AK PS+I+F+PLN+TKEY+  E+M+
Sbjct: 140 IELQEKLHQNICRKRALVAIGTHDLDTLSGPFTYTAKRPSDIKFKPLNKTKEYTACELMN 199

Query: 182 LYATSQIRPH 191
           +Y T     H
Sbjct: 200 IYKTDNHLKH 209

Homo sapiens (taxid: 9606)

EC: 6

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: 2

EC: 0

>sp|Q19713|SYFB_CAEEL Phenylalanine--tRNA ligase beta subunit OS=Caenorhabditis elegans GN=frs-2 PE=1 SV=2

 Score =  195 bits (495), Expect = 3e-49,   Method: Compositional matrix adjust.
 Identities = 95/185 (51%), Positives = 124/185 (67%), Gaps = 29/185 (15%)

Query: 30  TDEEFASLCFAFGLELDEVTSEKQIISKEQGADNSKGASEDVIYRIDVPANRYDLLCLEG 89
           +++EF  LCF +GLELDE+TSEK  + KEQG   +   ++  +Y+ID+PANRYDLL +EG
Sbjct: 20  SEKEFDELCFEYGLELDEITSEKAAVEKEQGTRAASDLNDQEVYKIDIPANRYDLLSVEG 79

Query: 90  LYNGLM-----------------------------TSQIRPHAVAAVLRNITLNEERYAS 120
           L   +                              T+Q+RP  V AVLR+I+ + + YAS
Sbjct: 80  LARAIRIFKQEIPSPAYKYADVPKTGLQKIIVKKETAQVRPFVVGAVLRDISFDADSYAS 139

Query: 121 FIELQDKLHQNICRKRTLVAIGTHDLDTIKGPFIYDAKPPSEIRFQPLNQTKEYSGTEIM 180
           FI+LQDKLHQNICRKRTLVAIGTHDLDTI+GPF Y A+ P +I+F+PLNQTKEY+  E+M
Sbjct: 140 FIDLQDKLHQNICRKRTLVAIGTHDLDTIQGPFEYRAEAPKDIKFKPLNQTKEYTAEELM 199

Query: 181 DLYAT 185
            LY+T
Sbjct: 200 TLYST 204

Caenorhabditis elegans (taxid: 6239)

EC: 6

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: 2

EC: 0

>sp|Q9SGE9|SYFB_ARATH Probable phenylalanine--tRNA ligase beta subunit OS=Arabidopsis thaliana GN=At1g72550 PE=2 SV=1

 Score =  181 bits (460), Expect = 4e-45,   Method: Compositional matrix adjust.
 Identities = 93/185 (50%), Positives = 120/185 (64%), Gaps = 29/185 (15%)

Query: 30  TDEEFASLCFAFGLELDEVTSEKQIISKEQGADNSKGASEDVIYRIDVPANRYDLLCLEG 89
           T E+F  LCF+FG+ELD+VT+EK II KE+  D      E++IY+I++PANR DLLCLEG
Sbjct: 20  TQEKFEELCFSFGIELDDVTTEKAIIRKEKHIDEEADDDEEIIYKIEIPANRPDLLCLEG 79

Query: 90  LYNGLM-----------------------------TSQIRPHAVAAVLRNITLNEERYAS 120
           L   L                              TS+IRP  V AVLR +T +E RY S
Sbjct: 80  LAQSLRVFIEKQEIPTYTLADISKDKILQMNVKPETSKIRPFVVCAVLRGVTFDEARYNS 139

Query: 121 FIELQDKLHQNICRKRTLVAIGTHDLDTIKGPFIYDAKPPSEIRFQPLNQTKEYSGTEIM 180
           FI+LQDKLHQNICR+R+LVAIGTHDLDT++GPF Y+A PP++I F PL QTK +   E++
Sbjct: 140 FIDLQDKLHQNICRRRSLVAIGTHDLDTLQGPFTYEALPPTDINFVPLKQTKSFRADELI 199

Query: 181 DLYAT 185
           + Y +
Sbjct: 200 EFYKS 204

Arabidopsis thaliana (taxid: 3702)

EC: 6

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: 2

EC: 0

>sp|Q550D2|SYFB_DICDI Phenylalanine--tRNA ligase beta subunit OS=Dictyostelium discoideum GN=phesB PE=3 SV=2

 Score =  177 bits (450), Expect = 6e-44,   Method: Compositional matrix adjust.
 Identities = 91/185 (49%), Positives = 115/185 (62%), Gaps = 29/185 (15%)

Query: 30  TDEEFASLCFAFGLELDEVTSEKQIISKEQGADNSKGASEDVIYRIDVPANRYDLLCLEG 89
           T E+F  LCFAFG+ELDEVTSE+++   E G ++    S+DVIY+IDV ANRYDLLCLEG
Sbjct: 23  TQEQFEDLCFAFGVELDEVTSEREMKKNETGVEDLT-VSDDVIYKIDVSANRYDLLCLEG 81

Query: 90  ----------------------------LYNGLMTSQIRPHAVAAVLRNITLNEERYASF 121
                                       LY       +RP  VA +LR+IT  +E Y SF
Sbjct: 82  IARALNVYNHKASIPKYQIVPPKNSHEKLYISKEVESVRPVIVAGILRDITFTQESYDSF 141

Query: 122 IELQDKLHQNICRKRTLVAIGTHDLDTIKGPFIYDAKPPSEIRFQPLNQTKEYSGTEIMD 181
           I+LQ+KLH NIC+KR+LV+IGTHDLDT+ GPF Y A  P +I+F PL+QTKEY+  E+  
Sbjct: 142 IDLQEKLHANICKKRSLVSIGTHDLDTLSGPFYYKALAPKDIKFVPLSQTKEYNAEELFK 201

Query: 182 LYATS 186
            Y  S
Sbjct: 202 FYDES 206

Dictyostelium discoideum (taxid: 44689)

EC: 6

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: 2

EC: 0

>sp|P15624|SYFB_YEAST Phenylalanine--tRNA ligase beta subunit OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=FRS1 PE=1 SV=3

 Score =  167 bits (423), Expect = 7e-41,   Method: Compositional matrix adjust.
 Identities = 84/183 (45%), Positives = 114/183 (62%), Gaps = 36/183 (19%)

Query: 30  TDEEFASLCFAFGLELDEVTSEKQIISKEQGADNSKGASEDVIYRIDVPANRYDLLCLEG 89
           T +EF  LCF FG+E+DE T+E+ + + E+              ++D+ ANRYDLLC+EG
Sbjct: 20  TSQEFDELCFEFGMEMDEDTTEEALKTGEEPE-----------LKLDISANRYDLLCIEG 68

Query: 90  LYNGL-------------------------MTSQIRPHAVAAVLRNITLNEERYASFIEL 124
           +   L                          T QIRP A AAVLRNI LNE+ YASFI L
Sbjct: 69  ISQSLNEYLERKERPDYKLSKPTTKLIIDKSTEQIRPFATAAVLRNIKLNEKSYASFIAL 128

Query: 125 QDKLHQNICRKRTLVAIGTHDLDTIKGPFIYDAKPPSEIRFQPLNQTKEYSGTEIMDLYA 184
           QDKLH N+CR R+LVA+GTHDLD+I+GPF Y A PP +I+F PLNQT+E++G ++++ Y 
Sbjct: 129 QDKLHANLCRNRSLVAMGTHDLDSIEGPFHYRALPPKDIKFVPLNQTQEFTGDKLIEFYK 188

Query: 185 TSQ 187
           + +
Sbjct: 189 SPE 191

Saccharomyces cerevisiae (strain ATCC 204508 / S288c) (taxid: 559292)

EC: 6

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: 2

EC: 0

>sp|O13432|SYFB_CANAX Phenylalanine--tRNA ligase beta subunit OS=Candida albicans GN=FRS1 PE=2 SV=3

 Score =  159 bits (402), Expect = 2e-38,   Method: Compositional matrix adjust.
 Identities = 85/181 (46%), Positives = 106/181 (58%), Gaps = 38/181 (20%)

Query: 30  TDEEFASLCFAFGLELDEVTSEKQIISKEQGADNSKGASEDVIYRIDVPANRYDLLCLEG 89
           T EEF  LCF FG+ELDE T+E           + KG  E    +I+VPANRYD+LC+EG
Sbjct: 20  TTEEFDELCFQFGIELDEDTTE-----------DVKGTDERPQLKIEVPANRYDMLCIEG 68

Query: 90  LYNGL---------------------------MTSQIRPHAVAAVLRNITLNEERYASFI 122
           +   L                            T  IR +A +A+LRN+ L+E  Y SFI
Sbjct: 69  IAQALNEFLGNTSAPNYKLSPSKPEISLTIKESTYPIRQYAASAILRNVNLDERAYDSFI 128

Query: 123 ELQDKLHQNICRKRTLVAIGTHDLDTIKGPFIYDAKPPSEIRFQPLNQTKEYSGTEIMDL 182
            LQDKLH N+CR RTLVAIGTHDLDT+  PF Y+A  P +I F+PLNQTKE +G E+M+ 
Sbjct: 129 ALQDKLHANLCRNRTLVAIGTHDLDTLTPPFTYEALAPKDIVFKPLNQTKEINGEELMEF 188

Query: 183 Y 183
           Y
Sbjct: 189 Y 189

Candida albicans (taxid: 5476)

EC: 6

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: 2

EC: 0

>sp|O42849|SYFB_SCHPO Phenylalanine--tRNA ligase beta subunit OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=frs1 PE=3 SV=1

 Score =  159 bits (402), Expect = 2e-38,   Method: Compositional matrix adjust.
 Identities = 83/183 (45%), Positives = 107/183 (58%), Gaps = 35/183 (19%)

Query: 30  TDEEFASLCFAFGLELDEVTSEKQIISKEQGADNSKGASEDVIYRIDVPANRYDLLCLEG 89
           T +EF  LCF FG+ELDE T+           D  +  SE    +ID+PANRYD+LCLEG
Sbjct: 20  TTQEFDELCFQFGIELDEDTTN----------DPERSPSERPSLKIDIPANRYDMLCLEG 69

Query: 90  LYNGLM-------------------------TSQIRPHAVAAVLRNITLNEERYASFIEL 124
           +   L                          TS+IRP+A AA+LR + L+  RY SFI L
Sbjct: 70  IAQALNVFNRRMATPQYKLLPSTTSLTISPETSEIRPYAAAAILRGVKLDPIRYQSFIAL 129

Query: 125 QDKLHQNICRKRTLVAIGTHDLDTIKGPFIYDAKPPSEIRFQPLNQTKEYSGTEIMDLYA 184
           QDKLH N+CR RTLVAIGTHD   ++GPF Y+A  P EI F PLNQT+E +G+ +++ Y 
Sbjct: 130 QDKLHANLCRNRTLVAIGTHDFSVMEGPFTYEALKPEEINFVPLNQTQEINGSNLLEFYK 189

Query: 185 TSQ 187
            S+
Sbjct: 190 DSK 192

Schizosaccharomyces pombe (strain 972 / ATCC 24843) (taxid: 284812)

EC: 6

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: 2

EC: 0

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	273
387916044	589	phenylalanyl-tRNA synthetase beta chain	0.586	0.271	0.636	3e-61
242019744	569	phenylalanyl-tRNA synthetase beta chain,	0.567	0.272	0.642	1e-60
213511304	589	Phenylalanyl-tRNA synthetase beta chain	0.571	0.264	0.627	3e-60
387017596	589	Phenylalanyl-tRNA synthetase beta chain	0.564	0.261	0.633	1e-59
348539041	589	PREDICTED: phenylalanyl-tRNA synthetase	0.571	0.264	0.621	2e-59
449509720	596	PREDICTED: phenylalanine--tRNA ligase be	0.578	0.265	0.614	4e-59
432891033	846	PREDICTED: phenylalanine--tRNA ligase be	0.608	0.196	0.584	4e-59
193599054	589	PREDICTED: probable phenylalanyl-tRNA sy	0.571	0.264	0.617	7e-59
56090156	590	phenylalanyl-tRNA synthetase beta chain	0.571	0.264	0.618	1e-58
449267973	570	Phenylalanyl-tRNA synthetase beta chain,	0.567	0.271	0.614	1e-58

>gi|387916044|gb|AFK11631.1| phenylalanyl-tRNA synthetase beta chain [Callorhinchus milii]

 Score =  241 bits (614), Expect = 3e-61,   Method: Compositional matrix adjust.
 Identities = 121/190 (63%), Positives = 138/190 (72%), Gaps = 30/190 (15%)

Query: 30  TDEEFASLCFAFGLELDEVTSEKQIISKEQGADNSKGASEDVIYRIDVPANRYDLLCLEG 89
           TDEEF  LCF FGLELDEVT+EK IIS+EQG   + GAS+ V+Y+IDVPANRYDLLCLEG
Sbjct: 20  TDEEFDELCFEFGLELDEVTTEKDIISREQGDGKADGASDIVLYKIDVPANRYDLLCLEG 79

Query: 90  LYNGLM-----------------------------TSQIRPHAVAAVLRNITLNEERYAS 120
           L  GL                              T+Q+RPHAVAAVLRNI   ++RY S
Sbjct: 80  LVRGLQVFKERIEAPKYTRVGPLNGEMQKLIITEETAQVRPHAVAAVLRNIKFTKDRYDS 139

Query: 121 FIELQDKLHQNICRKRTLVAIGTHDLDTIKGPFIYDAKPPSEIRFQPLNQTKEYSGTEIM 180
           FIELQ+KLHQNICRKRTLVAIGTHDLDTI GPF Y AKPPSEI+F+PLNQ+KEY+  E+M
Sbjct: 140 FIELQEKLHQNICRKRTLVAIGTHDLDTISGPFTYTAKPPSEIKFKPLNQSKEYTALELM 199

Query: 181 DLYAT-SQIR 189
           DLY T SQ+R
Sbjct: 200 DLYKTDSQLR 209

Source: Callorhinchus milii

Species: Callorhinchus milii

Genus: Callorhinchus

Family: Callorhinchidae

Order: Chimaeriformes

Class: Chondrichthyes

Phylum: Chordata

Superkingdom: Eukaryota

>gi|242019744|ref|XP_002430319.1| phenylalanyl-tRNA synthetase beta chain, putative [Pediculus humanus corporis] gi|212515434|gb|EEB17581.1| phenylalanyl-tRNA synthetase beta chain, putative [Pediculus humanus corporis]

 Score =  239 bits (609), Expect = 1e-60,   Method: Compositional matrix adjust.
 Identities = 117/182 (64%), Positives = 136/182 (74%), Gaps = 27/182 (14%)

Query: 30  TDEEFASLCFAFGLELDEVTSEKQIISKEQGAD-NSKGASEDVIYRIDVPANRYDLLCLE 88
           TD EFA LCF FGLELDE+T+EKQ+I +EQG+D +++ ASE+VIYRID+PANRYDLLCLE
Sbjct: 20  TDNEFAELCFDFGLELDEITTEKQMILREQGSDQHAQNASEEVIYRIDIPANRYDLLCLE 79

Query: 89  GLYNGLMTSQ--------------------------IRPHAVAAVLRNITLNEERYASFI 122
           GL  GL+  Q                          IRP+ V+A+LRN+T N + Y SFI
Sbjct: 80  GLVRGLLIFQGKLKPPIFQPSENINEKITVMPNTKLIRPYIVSAILRNVTFNNDIYNSFI 139

Query: 123 ELQDKLHQNICRKRTLVAIGTHDLDTIKGPFIYDAKPPSEIRFQPLNQTKEYSGTEIMDL 182
           +LQDKLH NICRKR+LVAIGTHDLDTIKGPFIYDAKPPSEI F PLNQ K+YSG EIMDL
Sbjct: 140 DLQDKLHHNICRKRSLVAIGTHDLDTIKGPFIYDAKPPSEITFVPLNQNKKYSGLEIMDL 199

Query: 183 YA 184
           YA
Sbjct: 200 YA 201

Source: Pediculus humanus corporis

Species: Pediculus humanus

Genus: Pediculus

Family: Pediculidae

Order: Phthiraptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|213511304|ref|NP_001133289.1| Phenylalanyl-tRNA synthetase beta chain [Salmo salar] gi|209149545|gb|ACI32979.1| Phenylalanyl-tRNA synthetase beta chain [Salmo salar]

 Score =  238 bits (606), Expect = 3e-60,   Method: Compositional matrix adjust.
 Identities = 116/185 (62%), Positives = 133/185 (71%), Gaps = 29/185 (15%)

Query: 30  TDEEFASLCFAFGLELDEVTSEKQIISKEQGADNSKGASEDVIYRIDVPANRYDLLCLEG 89
           TDEEF  LCF FGLELDE+TSEK IIS+EQG   ++GAS+ ++Y+IDVPANRYDLLCLEG
Sbjct: 20  TDEEFDELCFEFGLELDEITSEKDIISREQGDTKAQGASDVILYKIDVPANRYDLLCLEG 79

Query: 90  LYNGLM-----------------------------TSQIRPHAVAAVLRNITLNEERYAS 120
           L  GL                              T+ +RPHAVAAVLRNIT  +ERY S
Sbjct: 80  LVRGLQVFKQKMEAPRYRRVSPASSEPHRLVITEETTAVRPHAVAAVLRNITFTQERYDS 139

Query: 121 FIELQDKLHQNICRKRTLVAIGTHDLDTIKGPFIYDAKPPSEIRFQPLNQTKEYSGTEIM 180
           FIELQ+KLHQN+CRKRTLVAIGTHDLDTI GPFIY AKPP +IRF+PLNQ KEY+  E+M
Sbjct: 140 FIELQEKLHQNVCRKRTLVAIGTHDLDTISGPFIYTAKPPGDIRFKPLNQAKEYTAQELM 199

Query: 181 DLYAT 185
            LY T
Sbjct: 200 SLYKT 204

Source: Salmo salar

Species: Salmo salar

Genus: Salmo

Family: Salmonidae

Order: Salmoniformes

Class: Actinopterygii

Phylum: Chordata

Superkingdom: Eukaryota

>gi|387017596|gb|AFJ50916.1| Phenylalanyl-tRNA synthetase beta chain [Crotalus adamanteus]

 Score =  235 bits (600), Expect = 1e-59,   Method: Compositional matrix adjust.
 Identities = 116/183 (63%), Positives = 135/183 (73%), Gaps = 29/183 (15%)

Query: 30  TDEEFASLCFAFGLELDEVTSEKQIISKEQGADNSKGASEDVIYRIDVPANRYDLLCLEG 89
           TDEEF  LCF FGLELDE+TSEK IISKE+G   ++GASE ++Y+IDVPANRYDLLCLEG
Sbjct: 20  TDEEFDELCFEFGLELDEITSEKDIISKEKGDGKAEGASETILYKIDVPANRYDLLCLEG 79

Query: 90  LYNGLM-----------------------------TSQIRPHAVAAVLRNITLNEERYAS 120
           L  GL                              T+QIRP+AVAAVLRNIT  ++RY S
Sbjct: 80  LVRGLQIFKERIRAPRYKKITPPNGEIQRLTISEETAQIRPYAVAAVLRNITFVKDRYDS 139

Query: 121 FIELQDKLHQNICRKRTLVAIGTHDLDTIKGPFIYDAKPPSEIRFQPLNQTKEYSGTEIM 180
           FI+LQ+KLHQNICRKR+LVAIGTHDLDTI GPFIY AKPP+EI+F+PLNQ KEYS  EIM
Sbjct: 140 FIDLQEKLHQNICRKRSLVAIGTHDLDTISGPFIYTAKPPAEIKFKPLNQDKEYSAPEIM 199

Query: 181 DLY 183
           ++Y
Sbjct: 200 EMY 202

Source: Crotalus adamanteus

Species: Crotalus adamanteus

Genus: Crotalus

Family: Viperidae

Order: Squamata

Phylum: Chordata

Superkingdom: Eukaryota

>gi|348539041|ref|XP_003456998.1| PREDICTED: phenylalanyl-tRNA synthetase beta chain [Oreochromis niloticus]

 Score =  235 bits (599), Expect = 2e-59,   Method: Compositional matrix adjust.
 Identities = 115/185 (62%), Positives = 132/185 (71%), Gaps = 29/185 (15%)

Query: 30  TDEEFASLCFAFGLELDEVTSEKQIISKEQGADNSKGASEDVIYRIDVPANRYDLLCLEG 89
           TDEEF  LCF FGLELDE+TSEK+IIS+EQG   + GAS+ ++Y+IDVPANRYDLLCLEG
Sbjct: 20  TDEEFDELCFEFGLELDEITSEKEIISREQGDTKASGASDVILYKIDVPANRYDLLCLEG 79

Query: 90  LYNGLM-----------------------------TSQIRPHAVAAVLRNITLNEERYAS 120
           L  GL                              T  +RPHAVAAVLRNIT  +ERY S
Sbjct: 80  LVRGLQVFKNKLEAPQYKRVSPLSGEPQKLIITKETEAVRPHAVAAVLRNITFTQERYDS 139

Query: 121 FIELQDKLHQNICRKRTLVAIGTHDLDTIKGPFIYDAKPPSEIRFQPLNQTKEYSGTEIM 180
           FIELQ+KLHQNICRKR+LVAIGTHDLDTI GPF Y AKPP +I F+PLNQTKEY+ T++M
Sbjct: 140 FIELQEKLHQNICRKRSLVAIGTHDLDTISGPFTYTAKPPGDISFKPLNQTKEYTATQLM 199

Query: 181 DLYAT 185
            LY T
Sbjct: 200 SLYKT 204

Source: Oreochromis niloticus

Species: Oreochromis niloticus

Genus: Oreochromis

Family: Cichlidae

Order: Perciformes

Class: Actinopterygii

Phylum: Chordata

Superkingdom: Eukaryota

>gi|449509720|ref|XP_002194127.2| PREDICTED: phenylalanine--tRNA ligase beta subunit [Taeniopygia guttata]

 Score =  234 bits (596), Expect = 4e-59,   Method: Compositional matrix adjust.
 Identities = 115/187 (61%), Positives = 137/187 (73%), Gaps = 29/187 (15%)

Query: 28  HGTDEEFASLCFAFGLELDEVTSEKQIISKEQGADNSKGASEDVIYRIDVPANRYDLLCL 87
           + +DEEF  LCF FGLELDE+TSEK IISKE+G + +KGAS+ V+Y+IDVPANRYDLLCL
Sbjct: 25  YSSDEEFDELCFEFGLELDEITSEKDIISKEKGEEKAKGASDVVLYKIDVPANRYDLLCL 84

Query: 88  EGLYNGLM-----------------------------TSQIRPHAVAAVLRNITLNEERY 118
           EGL  GL                              T+QIRPHAVAAVLRNIT  ++RY
Sbjct: 85  EGLVRGLQVFKERINLPRFEKIIPAEGEGQRLIITEQTAQIRPHAVAAVLRNITFTKDRY 144

Query: 119 ASFIELQDKLHQNICRKRTLVAIGTHDLDTIKGPFIYDAKPPSEIRFQPLNQTKEYSGTE 178
            SFI+LQ+KLHQNICRKR LVAIGTHDLDTI GPF Y AK PSEI+F+PL+Q++EY+ ++
Sbjct: 145 DSFIDLQEKLHQNICRKRALVAIGTHDLDTITGPFTYTAKAPSEIKFKPLSQSQEYTASQ 204

Query: 179 IMDLYAT 185
           IMDLY T
Sbjct: 205 IMDLYRT 211

Source: Taeniopygia guttata

Species: Taeniopygia guttata

Genus: Taeniopygia

Family: Estrildidae

Order: Passeriformes

Class: Aves

Phylum: Chordata

Superkingdom: Eukaryota

>gi|432891033|ref|XP_004075515.1| PREDICTED: phenylalanine--tRNA ligase beta subunit-like [Oryzias latipes]

 Score =  234 bits (596), Expect = 4e-59,   Method: Compositional matrix adjust.
 Identities = 114/195 (58%), Positives = 136/195 (69%), Gaps = 29/195 (14%)

Query: 20  VLPSTVAGHGTDEEFASLCFAFGLELDEVTSEKQIISKEQGADNSKGASEDVIYRIDVPA 79
           +L S +    TDEEF  LCF FGLELDE+TSEK+IIS+EQG   + GAS+ ++Y+IDVPA
Sbjct: 10  ILFSALGRSYTDEEFDELCFEFGLELDEITSEKEIISREQGDSKASGASDVILYKIDVPA 69

Query: 80  NRYDLLCLEGLYNGLM-----------------------------TSQIRPHAVAAVLRN 110
           NRYDLLCLEGL  GL                              T+ +RPHAVAAVLRN
Sbjct: 70  NRYDLLCLEGLVRGLQVFKNKLEAPRYSRVSPTTGEVQRLIITKETAAVRPHAVAAVLRN 129

Query: 111 ITLNEERYASFIELQDKLHQNICRKRTLVAIGTHDLDTIKGPFIYDAKPPSEIRFQPLNQ 170
           IT  +ERY SFIELQ+KLHQN+CRKR+LVAIGTHDLDTI GPF Y AKPP +I F+PLNQ
Sbjct: 130 ITFTKERYDSFIELQEKLHQNVCRKRSLVAIGTHDLDTISGPFTYTAKPPGDISFKPLNQ 189

Query: 171 TKEYSGTEIMDLYAT 185
            KEY+ +++M LY T
Sbjct: 190 NKEYTASQLMSLYKT 204

Source: Oryzias latipes

Species: Oryzias latipes

Genus: Oryzias

Family: Adrianichthyidae

Order: Beloniformes

Class: Actinopterygii

Phylum: Chordata

Superkingdom: Eukaryota

>gi|193599054|ref|XP_001944944.1| PREDICTED: probable phenylalanyl-tRNA synthetase beta chain-like [Acyrthosiphon pisum]

 Score =  233 bits (594), Expect = 7e-59,   Method: Compositional matrix adjust.
 Identities = 113/183 (61%), Positives = 135/183 (73%), Gaps = 27/183 (14%)

Query: 30  TDEEFASLCFAFGLELDEVTSEKQIISKEQGADNSKGASEDVIYRIDVPANRYDLLCLEG 89
           TDEEF +LC ++GLELDEVTSEKQ++SKEQ    S+GAS+D IYRID+PANRYDLLCLEG
Sbjct: 20  TDEEFDNLCISYGLELDEVTSEKQMVSKEQSESKSEGASDDTIYRIDIPANRYDLLCLEG 79

Query: 90  LYNGLM---------------------------TSQIRPHAVAAVLRNITLNEERYASFI 122
           L + L+                           T QIRP+ VAAVLR+ITLN  RYASFI
Sbjct: 80  LVDALLVFQNKMELPHYKVIQSKKPLKVLVKSNTKQIRPYVVAAVLRDITLNAARYASFI 139

Query: 123 ELQDKLHQNICRKRTLVAIGTHDLDTIKGPFIYDAKPPSEIRFQPLNQTKEYSGTEIMDL 182
           +LQDKLHQNICRKR+LVAIGTHDLDTI+GPF YDA PP  I+F+ LNQT+ +S  E+MD+
Sbjct: 140 DLQDKLHQNICRKRSLVAIGTHDLDTIQGPFTYDALPPENIKFKALNQTEVHSAAELMDI 199

Query: 183 YAT 185
           Y+T
Sbjct: 200 YST 202

Source: Acyrthosiphon pisum

Species: Acyrthosiphon pisum

Genus: Acyrthosiphon

Family: Aphididae

Order: Hemiptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|56090156|ref|NP_001007769.1| phenylalanyl-tRNA synthetase beta chain [Danio rerio] gi|55715799|gb|AAH85625.1| Phenylalanine-tRNA synthetase-like [Danio rerio]

 Score =  232 bits (592), Expect = 1e-58,   Method: Compositional matrix adjust.
 Identities = 115/186 (61%), Positives = 133/186 (71%), Gaps = 30/186 (16%)

Query: 30  TDEEFASLCFAFGLELDEVTSEKQIISKEQGADNSKGASEDVIYRIDVPANRYDLLCLEG 89
           TDEEF  LCF FGLELDE+TSEK IIS+EQG D ++GAS+ V+Y+IDVPANRYDLLCLEG
Sbjct: 20  TDEEFDELCFEFGLELDEITSEKDIISREQGDDKAEGASDVVLYKIDVPANRYDLLCLEG 79

Query: 90  LYNGLM------------------------------TSQIRPHAVAAVLRNITLNEERYA 119
           L  GL                               T+ +RP AVAAVLRNIT  +ERY 
Sbjct: 80  LVRGLQVFKDKMEAPRYKRVSPADGGEPQRLLITEETASVRPFAVAAVLRNITFTQERYD 139

Query: 120 SFIELQDKLHQNICRKRTLVAIGTHDLDTIKGPFIYDAKPPSEIRFQPLNQTKEYSGTEI 179
           SFIELQ+KLHQNICRKRTLVAIGTHDLDTI GPF Y AK P EIRF+PLNQ++E++ TE+
Sbjct: 140 SFIELQEKLHQNICRKRTLVAIGTHDLDTISGPFTYTAKAPGEIRFKPLNQSQEFTATEL 199

Query: 180 MDLYAT 185
           M LY +
Sbjct: 200 MSLYKS 205

Source: Danio rerio

Species: Danio rerio

Genus: Danio

Family: Cyprinidae

Order: Cypriniformes

Class: Actinopterygii

Phylum: Chordata

Superkingdom: Eukaryota

>gi|449267973|gb|EMC78860.1| Phenylalanyl-tRNA synthetase beta chain, partial [Columba livia]

 Score =  232 bits (591), Expect = 1e-58,   Method: Compositional matrix adjust.
 Identities = 113/184 (61%), Positives = 134/184 (72%), Gaps = 29/184 (15%)

Query: 31  DEEFASLCFAFGLELDEVTSEKQIISKEQGADNSKGASEDVIYRIDVPANRYDLLCLEGL 90
           DEEF  LCF FGLELDE+TSEK IISKE+G + +KGAS+ ++Y+IDVPANRYDLLCLEGL
Sbjct: 2   DEEFDELCFEFGLELDEITSEKDIISKEKGEEKAKGASDIILYKIDVPANRYDLLCLEGL 61

Query: 91  YNGLM-----------------------------TSQIRPHAVAAVLRNITLNEERYASF 121
             GL                              T Q+RPHAVAAVLRNIT  ++RY SF
Sbjct: 62  VRGLQVFKERISLPRYEKIIPAQGEGQKLIITEETVQVRPHAVAAVLRNITFTKDRYDSF 121

Query: 122 IELQDKLHQNICRKRTLVAIGTHDLDTIKGPFIYDAKPPSEIRFQPLNQTKEYSGTEIMD 181
           I+LQ+KLHQNICR+R LVAIGTHDLDTI GPF Y AK PSEI+F+PLNQ++EY+ ++IMD
Sbjct: 122 IDLQEKLHQNICRRRALVAIGTHDLDTISGPFTYTAKAPSEIKFKPLNQSQEYTASQIMD 181

Query: 182 LYAT 185
           LY T
Sbjct: 182 LYRT 185

Source: Columba livia

Species: Columba livia

Genus: Columba

Family: Columbidae

Order: Columbiformes

Class: Aves

Phylum: Chordata

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	273
ZFIN|ZDB-GENE-021206-2	590	farsb "phenylalanyl-tRNA synth	0.322	0.149	0.761	2.9e-57
UNIPROTKB|F6XQ20	589	FARSB "Uncharacterized protein	0.351	0.162	0.666	7.4e-31
UNIPROTKB|E2R6K4	593	FARSB "Uncharacterized protein	0.351	0.161	0.666	7.6e-31
UNIPROTKB|Q5ZJ61	589	FARSB "Uncharacterized protein	0.344	0.159	0.705	1.4e-56
FB|FBgn0039175	589	CG5706 [Drosophila melanogaste	0.351	0.162	0.670	4.5e-56
UNIPROTKB|A8E4P2	589	FARSB "Uncharacterized protein	0.351	0.162	0.656	1.5e-55
MGI|MGI:1346035	589	Farsb "phenylalanyl-tRNA synth	0.351	0.162	0.656	1.6e-55
RGD|1303210	589	Farsb "phenylalanyl-tRNA synth	0.351	0.162	0.656	2.5e-55
UNIPROTKB|Q9NSD9	589	FARSB "Phenylalanine--tRNA lig	0.351	0.162	0.666	5.2e-55
WB|WBGene00001498	591	fars-3 [Caenorhabditis elegans	0.450	0.208	0.550	1e-47

ZFIN|ZDB-GENE-021206-2 farsb "phenylalanyl-tRNA synthetase, beta subunit" [Danio rerio (taxid:7955)]

 Score = 357 (130.7 bits), Expect = 2.9e-57, Sum P(2) = 2.9e-57
 Identities = 67/88 (76%), Positives = 76/88 (86%)

Query:   185 TSQIRPHAVAAVLRNITLNEERYASFIELQDKLHQNICRKRTLVAIGTHDLDTIKGPFIY 244
             T+ +RP AVAAVLRNIT  +ERY SFIELQ+KLHQNICRKRTLVAIGTHDLDTI GPF Y
Sbjct:   116 TASVRPFAVAAVLRNITFTQERYDSFIELQEKLHQNICRKRTLVAIGTHDLDTISGPFTY 175

Query:   245 DAKPPSEIRFQPLNQTKEYTGTEIMDLY 272
              AK P EIRF+PLNQ++E+T TE+M LY
Sbjct:   176 TAKAPGEIRFKPLNQSQEFTATELMSLY 203

GO:0000166 "nucleotide binding" evidence=IEA

GO:0000287 "magnesium ion binding" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

GO:0006432 "phenylalanyl-tRNA aminoacylation" evidence=IEA

GO:0003723 "RNA binding" evidence=IEA

GO:0004826 "phenylalanine-tRNA ligase activity" evidence=IEA

GO:0005737 "cytoplasm" evidence=IEA

GO:0004812 "aminoacyl-tRNA ligase activity" evidence=IEA

UNIPROTKB|F6XQ20 FARSB "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 345 (126.5 bits), Expect = 7.4e-31, P = 7.4e-31
 Identities = 64/96 (66%), Positives = 79/96 (82%)

Query:    96 TSQIRPHAVAAVLRNITLNEERYASFIELQDKLHQNICRKRTLVAIGTHDLDTIKGPFIY 155
             T++IRP+AVAAVLRNI   ++RY SFIELQ+KLHQNICRKR LVAIGTHDLDT+ GPF Y
Sbjct:   114 TAKIRPYAVAAVLRNIKFTKDRYDSFIELQEKLHQNICRKRALVAIGTHDLDTLSGPFTY 173

Query:   156 DAKPPSEIRFQPLNQTKEYSGTEIMDLYATSQIRPH 191
              AK PS+I+F+PLN+TKEY+  E+M++Y T     H
Sbjct:   174 TAKRPSDIKFKPLNKTKEYTACELMNIYKTDNHLKH 209

GO:0006432 "phenylalanyl-tRNA aminoacylation" evidence=IEA

GO:0005737 "cytoplasm" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

GO:0004826 "phenylalanine-tRNA ligase activity" evidence=IEA

GO:0003723 "RNA binding" evidence=IEA

GO:0000287 "magnesium ion binding" evidence=IEA

UNIPROTKB|E2R6K4 FARSB "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 345 (126.5 bits), Expect = 7.6e-31, P = 7.6e-31
 Identities = 64/96 (66%), Positives = 79/96 (82%)

Query:    96 TSQIRPHAVAAVLRNITLNEERYASFIELQDKLHQNICRKRTLVAIGTHDLDTIKGPFIY 155
             T++IRP+AVAAVLRNI   ++RY SFIELQ+KLHQNICRKR LVAIGTHDLDT+ GPF Y
Sbjct:   114 TAKIRPYAVAAVLRNIKFTKDRYDSFIELQEKLHQNICRKRALVAIGTHDLDTLSGPFTY 173

Query:   156 DAKPPSEIRFQPLNQTKEYSGTEIMDLYATSQIRPH 191
              AK PS+I+F+PLN+TKEY+  E+M++Y T     H
Sbjct:   174 TAKRPSDIKFKPLNKTKEYTACELMNIYKTDNHLKH 209

GO:0006432 "phenylalanyl-tRNA aminoacylation" evidence=IEA

GO:0005737 "cytoplasm" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

GO:0004826 "phenylalanine-tRNA ligase activity" evidence=IEA

GO:0003723 "RNA binding" evidence=IEA

GO:0000287 "magnesium ion binding" evidence=IEA

UNIPROTKB|Q5ZJ61 FARSB "Uncharacterized protein" [Gallus gallus (taxid:9031)]

 Score = 351 (128.6 bits), Expect = 1.4e-56, Sum P(2) = 1.4e-56
 Identities = 67/95 (70%), Positives = 82/95 (86%)

Query:    96 TSQIRPHAVAAVLRNITLNEERYASFIELQDKLHQNICRKRTLVAIGTHDLDTIKGPFIY 155
             T +IRP+AVAAVLRNIT  +ERY SFI+LQ+KLHQNICR+R LVAIGTHDLDTI GPF +
Sbjct:   115 TVKIRPYAVAAVLRNITFTKERYDSFIDLQEKLHQNICRRRALVAIGTHDLDTISGPFTF 174

Query:   156 DAKPPSEIRFQPLNQTKEYSGTEIMDLYAT-SQIR 189
              AK PSEI+F+PLNQ++EY+ ++IMDLY T S +R
Sbjct:   175 TAKAPSEIKFKPLNQSQEYTASQIMDLYRTDSHLR 209

GO:0000287 "magnesium ion binding" evidence=IEA

GO:0003723 "RNA binding" evidence=IEA

GO:0004826 "phenylalanine-tRNA ligase activity" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

GO:0005737 "cytoplasm" evidence=IEA

GO:0006432 "phenylalanyl-tRNA aminoacylation" evidence=IEA

FB|FBgn0039175 CG5706 [Drosophila melanogaster (taxid:7227)]

 Score = 354 (129.7 bits), Expect = 4.5e-56, Sum P(2) = 4.5e-56
 Identities = 65/97 (67%), Positives = 84/97 (86%)

Query:    96 TSQIRPHAVAAVLRNITLNEERYASFIELQDKLHQNICRKRTLVAIGTHDLDTIKGPFIY 155
             T+QIRP+AVAAVLRN+T  +  Y SFI+LQDKLHQNICRKRTLVAIGTHDLDT++GPF Y
Sbjct:   114 TAQIRPYAVAAVLRNVTFTQASYNSFIDLQDKLHQNICRKRTLVAIGTHDLDTLQGPFSY 173

Query:   156 DAKPPSEIRFQPLNQTKEYSGTEIMDLYAT-SQIRPH 191
             +A  P +I+F+PLNQTKE +G+E+MD Y+T +Q++ +
Sbjct:   174 EALAPDQIKFKPLNQTKEMTGSELMDFYSTHAQLKQY 210

GO:0006432 "phenylalanyl-tRNA aminoacylation" evidence=ISS

GO:0009328 "phenylalanine-tRNA ligase complex" evidence=ISS

GO:0004826 "phenylalanine-tRNA ligase activity" evidence=ISS

GO:0000287 "magnesium ion binding" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

GO:0003723 "RNA binding" evidence=IEA

UNIPROTKB|A8E4P2 FARSB "Uncharacterized protein" [Bos taurus (taxid:9913)]

 Score = 342 (125.4 bits), Expect = 1.5e-55, Sum P(2) = 1.5e-55
 Identities = 63/96 (65%), Positives = 79/96 (82%)

Query:    96 TSQIRPHAVAAVLRNITLNEERYASFIELQDKLHQNICRKRTLVAIGTHDLDTIKGPFIY 155
             T++IRP+AVAAVLRNI   ++RY SFIELQ+KLHQNICRKR LVAIGTHDLDT+ GPF Y
Sbjct:   114 TAKIRPYAVAAVLRNIKFTKDRYDSFIELQEKLHQNICRKRALVAIGTHDLDTLSGPFTY 173

Query:   156 DAKPPSEIRFQPLNQTKEYSGTEIMDLYATSQIRPH 191
              AK PS+I+F+PLN++KEY+  E+M++Y T     H
Sbjct:   174 TAKKPSDIKFKPLNKSKEYTACELMNIYKTDNQLKH 209

GO:0006432 "phenylalanyl-tRNA aminoacylation" evidence=IEA

GO:0005737 "cytoplasm" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

GO:0004826 "phenylalanine-tRNA ligase activity" evidence=IEA

GO:0003723 "RNA binding" evidence=IEA

GO:0000287 "magnesium ion binding" evidence=IEA

MGI|MGI:1346035 Farsb "phenylalanyl-tRNA synthetase, beta subunit" [Mus musculus (taxid:10090)]

 Score = 341 (125.1 bits), Expect = 1.6e-55, Sum P(2) = 1.6e-55
 Identities = 63/96 (65%), Positives = 78/96 (81%)

Query:    96 TSQIRPHAVAAVLRNITLNEERYASFIELQDKLHQNICRKRTLVAIGTHDLDTIKGPFIY 155
             T+++RP AVAAVLRNI   ++RY SFIELQ+KLHQNICRKR LVAIGTHDLDT+ GPF Y
Sbjct:   114 TAKVRPFAVAAVLRNIKFTKDRYDSFIELQEKLHQNICRKRALVAIGTHDLDTLSGPFTY 173

Query:   156 DAKPPSEIRFQPLNQTKEYSGTEIMDLYATSQIRPH 191
              AK PS+I+F+PLN+TKEY+  E+M++Y T     H
Sbjct:   174 TAKRPSDIKFKPLNKTKEYTACELMNIYKTDNHLKH 209

GO:0000166 "nucleotide binding" evidence=IEA

GO:0000287 "magnesium ion binding" evidence=IEA

GO:0003723 "RNA binding" evidence=IEA

GO:0004812 "aminoacyl-tRNA ligase activity" evidence=IEA

GO:0004826 "phenylalanine-tRNA ligase activity" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

GO:0005737 "cytoplasm" evidence=IEA

GO:0006412 "translation" evidence=IEA

GO:0006432 "phenylalanyl-tRNA aminoacylation" evidence=IEA

GO:0016874 "ligase activity" evidence=IEA

RGD|1303210 Farsb "phenylalanyl-tRNA synthetase, beta subunit" [Rattus norvegicus (taxid:10116)]

 Score = 341 (125.1 bits), Expect = 2.5e-55, Sum P(2) = 2.5e-55
 Identities = 63/96 (65%), Positives = 78/96 (81%)

Query:    96 TSQIRPHAVAAVLRNITLNEERYASFIELQDKLHQNICRKRTLVAIGTHDLDTIKGPFIY 155
             T+++RP AVAAVLRNI   ++RY SFIELQ+KLHQNICRKR LVAIGTHDLDT+ GPF Y
Sbjct:   114 TAKVRPFAVAAVLRNIKFTKDRYDSFIELQEKLHQNICRKRALVAIGTHDLDTLSGPFTY 173

Query:   156 DAKPPSEIRFQPLNQTKEYSGTEIMDLYATSQIRPH 191
              AK PS+I+F+PLN+TKEY+  E+M++Y T     H
Sbjct:   174 TAKRPSDIKFKPLNKTKEYTACELMNIYKTDNHLKH 209

GO:0000287 "magnesium ion binding" evidence=IEA

GO:0003723 "RNA binding" evidence=IEA

GO:0004826 "phenylalanine-tRNA ligase activity" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

GO:0005737 "cytoplasm" evidence=IEA

GO:0006432 "phenylalanyl-tRNA aminoacylation" evidence=IEA

UNIPROTKB|Q9NSD9 FARSB "Phenylalanine--tRNA ligase beta subunit" [Homo sapiens (taxid:9606)]

 Score = 342 (125.4 bits), Expect = 5.2e-55, Sum P(2) = 5.2e-55
 Identities = 64/96 (66%), Positives = 78/96 (81%)

Query:    96 TSQIRPHAVAAVLRNITLNEERYASFIELQDKLHQNICRKRTLVAIGTHDLDTIKGPFIY 155
             T++IRP AVAAVLRNI   ++RY SFIELQ+KLHQNICRKR LVAIGTHDLDT+ GPF Y
Sbjct:   114 TAKIRPFAVAAVLRNIKFTKDRYDSFIELQEKLHQNICRKRALVAIGTHDLDTLSGPFTY 173

Query:   156 DAKPPSEIRFQPLNQTKEYSGTEIMDLYATSQIRPH 191
              AK PS+I+F+PLN+TKEY+  E+M++Y T     H
Sbjct:   174 TAKRPSDIKFKPLNKTKEYTACELMNIYKTDNHLKH 209

GO:0000287 "magnesium ion binding" evidence=IEA

GO:0003723 "RNA binding" evidence=IEA

GO:0006432 "phenylalanyl-tRNA aminoacylation" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

GO:0004826 "phenylalanine-tRNA ligase activity" evidence=IEA

GO:0005737 "cytoplasm" evidence=TAS

GO:0006412 "translation" evidence=TAS

GO:0005829 "cytosol" evidence=TAS

GO:0006418 "tRNA aminoacylation for protein translation" evidence=TAS

GO:0010467 "gene expression" evidence=TAS

WB|WBGene00001498 fars-3 [Caenorhabditis elegans (taxid:6239)]

 Score = 340 (124.7 bits), Expect = 1.0e-47, Sum P(2) = 1.0e-47
 Identities = 71/129 (55%), Positives = 95/129 (73%)

Query:    75 IDVPANRYDLLCLEGLYNGLM---TSQIRPHAVAAVLRNITLNEERYASFIELQDKLHQN 131
             I  PA +Y  +   GL   ++   T+Q+RP  V AVLR+I+ + + YASFI+LQDKLHQN
Sbjct:    91 IPSPAYKYADVPKTGLQKIIVKKETAQVRPFVVGAVLRDISFDADSYASFIDLQDKLHQN 150

Query:   132 ICRKRTLVAIGTHDLDTIKGPFIYDAKPPSEIRFQPLNQTKEYSGTEIMDLYAT-SQIRP 190
             ICRKRTLVAIGTHDLDTI+GPF Y A+ P +I+F+PLNQTKEY+  E+M LY+T S ++ 
Sbjct:   151 ICRKRTLVAIGTHDLDTIQGPFEYRAEAPKDIKFKPLNQTKEYTAEELMTLYSTDSHLK- 209

Query:   191 HAVAAVLRN 199
              A   +++N
Sbjct:   210 -AYLPIIQN 217

GO:0000166 "nucleotide binding" evidence=IEA

GO:0004826 "phenylalanine-tRNA ligase activity" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

GO:0005737 "cytoplasm" evidence=IEA

GO:0006432 "phenylalanyl-tRNA aminoacylation" evidence=IEA

GO:0003723 "RNA binding" evidence=IEA

GO:0000287 "magnesium ion binding" evidence=IEA

GO:0009792 "embryo development ending in birth or egg hatching" evidence=IMP

GO:0000003 "reproduction" evidence=IMP

GO:0040007 "growth" evidence=IMP

GO:0002119 "nematode larval development" evidence=IMP

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q5R7F7	SYFB_PONAB	6, ., 1, ., 1, ., 2, 0	0.5947	0.5934	0.2750	yes	N/A
Q19713	SYFB_CAEEL	6, ., 1, ., 1, ., 2, 0	0.5135	0.5714	0.2639	yes	N/A
Q9VCA5	SYFB_DROME	6, ., 1, ., 1, ., 2, 0	0.6032	0.5714	0.2648	yes	N/A
Q9SGE9	SYFB_ARATH	6, ., 1, ., 1, ., 2, 0	0.5027	0.5714	0.2608	yes	N/A
Q9NSD9	SYFB_HUMAN	6, ., 1, ., 1, ., 2, 0	0.5947	0.5934	0.2750	yes	N/A
Q9WUA2	SYFB_MOUSE	6, ., 1, ., 1, ., 2, 0	0.5947	0.5934	0.2750	yes	N/A

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database

ID	Length	Definition	E-value
Query	273
PLN02265	597	PLN02265, PLN02265, probable phenylalanyl-tRNA syn	1e-81
PLN02265	597	PLN02265, PLN02265, probable phenylalanyl-tRNA syn	9e-48
TIGR00471	551	TIGR00471, pheT_arch, phenylalanyl-tRNA synthetase	5e-35
PRK09616	552	PRK09616, pheT, phenylalanyl-tRNA synthetase subun	4e-24
PRK09616	552	PRK09616, pheT, phenylalanyl-tRNA synthetase subun	4e-22
smart00873	174	smart00873, B3_4, B3/4 domain	5e-11
smart00873	174	smart00873, B3_4, B3/4 domain	5e-11
COG0072	650	COG0072, PheT, Phenylalanyl-tRNA synthetase beta s	5e-07
COG0072	650	COG0072, PheT, Phenylalanyl-tRNA synthetase beta s	5e-07

>gnl|CDD|215149 PLN02265, PLN02265, probable phenylalanyl-tRNA synthetase beta chain

 Score =  256 bits (656), Expect = 1e-81
 Identities = 100/191 (52%), Positives = 120/191 (62%), Gaps = 33/191 (17%)

Query: 30  TDEEFASLCFAFGLELDEVTSEKQIISKEQGADNSKG----ASEDVIYRIDVPANRYDLL 85
           T EEF  LCF FG+ELD+VT+EK II KE+  D  +       E+VIY+IDVPANRYDLL
Sbjct: 20  TQEEFDELCFEFGIELDDVTTEKAIIRKEKHLDEEEDGGADDDEEVIYKIDVPANRYDLL 79

Query: 86  CLEGL------YNGLM-----------------------TSQIRPHAVAAVLRNITLNEE 116
           CLEGL      + G                         TS IRP  V AVLR +T +E 
Sbjct: 80  CLEGLARALRVFLGTEPIPTYRLAEISKGSILKMHVKPETSLIRPFVVCAVLRGVTFDEA 139

Query: 117 RYASFIELQDKLHQNICRKRTLVAIGTHDLDTIKGPFIYDAKPPSEIRFQPLNQTKEYSG 176
           RY SFI+LQDKLHQNICR+RTLVAIGTHDLDT++GPF Y+A PP +I F PL QTK +  
Sbjct: 140 RYNSFIDLQDKLHQNICRRRTLVAIGTHDLDTLQGPFTYEALPPEDINFVPLKQTKSFRA 199

Query: 177 TEIMDLYATSQ 187
            E+M+ Y +  
Sbjct: 200 DELMEFYKSDM 210

Length = 597

>gnl|CDD|215149 PLN02265, PLN02265, probable phenylalanyl-tRNA synthetase beta chain

 Score =  167 bits (424), Expect = 9e-48
 Identities = 58/88 (65%), Positives = 69/88 (78%)

Query: 185 TSQIRPHAVAAVLRNITLNEERYASFIELQDKLHQNICRKRTLVAIGTHDLDTIKGPFIY 244
           TS IRP  V AVLR +T +E RY SFI+LQDKLHQNICR+RTLVAIGTHDLDT++GPF Y
Sbjct: 119 TSLIRPFVVCAVLRGVTFDEARYNSFIDLQDKLHQNICRRRTLVAIGTHDLDTLQGPFTY 178

Query: 245 DAKPPSEIRFQPLNQTKEYTGTEIMDLY 272
           +A PP +I F PL QTK +   E+M+ Y
Sbjct: 179 EALPPEDINFVPLKQTKSFRADELMEFY 206

Length = 597

>gnl|CDD|232989 TIGR00471, pheT_arch, phenylalanyl-tRNA synthetase, beta subunit

 Score =  131 bits (331), Expect = 5e-35
 Identities = 56/179 (31%), Positives = 78/179 (43%), Gaps = 41/179 (22%)

Query: 29  GTDEEFASLCFAFGLELDEVTSEKQIISKEQGADNSKGASEDVIYRIDVPANRYDLLCLE 88
               +   +     +  DE+          +G D      E    +++   NR DLL +E
Sbjct: 15  LIGTDRDEILEELPMMGDEI----------EGFDE-----ESPEIKVEFNPNRPDLLSVE 59

Query: 89  GLYNGL--------------------------MTSQIRPHAVAAVLRNITLNEERYASFI 122
           GL   L                             QIRP    AV++ I LN++   S I
Sbjct: 60  GLARSLRGYLGIEKGLKSYDSKKGDVKLTVDESVLQIRPFITGAVVKGIILNDKVLESLI 119

Query: 123 ELQDKLHQNICRKRTLVAIGTHDLDTIKGPFIYDAKPPSEIRFQPLNQTKEYSGTEIMD 181
           ELQ+KLH NI R R  VAIG HDLD ++ PF Y A  P+ I+F PLN  +E +  EI++
Sbjct: 120 ELQEKLHWNIGRNRRKVAIGIHDLDKVEFPFHYKAVSPNGIKFVPLNSDQEMTPDEILE 178

Every known example of the phenylalanyl-tRNA synthetase, except the monomeric form of mitochondrial, is an alpha 2 beta 2 heterotetramer. The beta subunits break into two subfamilies that are considerably different in sequence, length, and pattern of gaps. This model represents the subfamily that includes the beta subunit from eukaryotic cytosol, the Archaea, and spirochetes [Protein synthesis, tRNA aminoacylation]. Length = 551

>gnl|CDD|236592 PRK09616, pheT, phenylalanyl-tRNA synthetase subunit beta; Reviewed

 Score =  100 bits (252), Expect = 4e-24
 Identities = 60/200 (30%), Positives = 83/200 (41%), Gaps = 55/200 (27%)

Query: 9   DLRLSDLLRTLVLPSTVAGHG-TDEEFASLCFAFGLELDEVTSEKQIISKEQGADNSKGA 67
            +   DL R       + G    D+E   L      E++E+                   
Sbjct: 5   RVNKDDLER-------LIGIDLEDDELEDLLPMLKCEVEEI------------------- 38

Query: 68  SEDVIYRIDVPANRYDLLCLEGLYNGL--------------------------MTSQIRP 101
            ED   +I+   +R DLL +EGL   L                             +IRP
Sbjct: 39  -EDDEIKIEFNPDRPDLLSVEGLARALRGFLGIETGLPKYEVKDSDVKVEVDEEVPEIRP 97

Query: 102 HAVAAVLRNITLNEERYASFIELQDKLHQNICRKRTLVAIGTHDLDTIKGPFIYDAKPPS 161
           +   AV+R + L++E   S I+LQ+KLH  I RKR  VAIG HDLD IK P  Y A  P 
Sbjct: 98  YIAGAVVRGVKLDDEALKSLIQLQEKLHWTIGRKRKKVAIGIHDLDKIKPPIYYKAVDPD 157

Query: 162 EIRFQPLNQTKEYSGTEIMD 181
           E +F PL   +E +  EI++
Sbjct: 158 E-KFVPLGFDEEMTLREILE 176

Length = 552

>gnl|CDD|236592 PRK09616, pheT, phenylalanyl-tRNA synthetase subunit beta; Reviewed

 Score = 94.9 bits (237), Expect = 4e-22
 Identities = 41/85 (48%), Positives = 53/85 (62%), Gaps = 1/85 (1%)

Query: 186 SQIRPHAVAAVLRNITLNEERYASFIELQDKLHQNICRKRTLVAIGTHDLDTIKGPFIYD 245
            +IRP+   AV+R + L++E   S I+LQ+KLH  I RKR  VAIG HDLD IK P  Y 
Sbjct: 93  PEIRPYIAGAVVRGVKLDDEALKSLIQLQEKLHWTIGRKRKKVAIGIHDLDKIKPPIYYK 152

Query: 246 AKPPSEIRFQPLNQTKEYTGTEIMD 270
           A  P E +F PL   +E T  EI++
Sbjct: 153 AVDPDE-KFVPLGFDEEMTLREILE 176

Length = 552

>gnl|CDD|214876 smart00873, B3_4, B3/4 domain

 Score = 60.0 bits (146), Expect = 5e-11
 Identities = 17/84 (20%), Positives = 33/84 (39%), Gaps = 6/84 (7%)

Query: 189 RPHAVAAVLRNITLNEERYASFIELQDKLHQNICRKRTLVAIGTHDLDTIKGPFIYDAKP 248
            P  +  V+R +        S   LQ++LH+   R      +   +  +++      A  
Sbjct: 1   CPRYLGRVIRGVKNT---RPSPEWLQERLHRAGIRP-INNVVDITNYVSLETGQPLHAFD 56

Query: 249 PSEIRFQ--PLNQTKEYTGTEIMD 270
             +I+ +  PL + KE    E +D
Sbjct: 57  LDKIKGKDIPLRRAKEGEKFETLD 80

This domain is found in tRNA synthetase beta subunits as well as in some non tRNA synthetase proteins. Length = 174

>gnl|CDD|214876 smart00873, B3_4, B3/4 domain

 Score = 59.6 bits (145), Expect = 5e-11
 Identities = 17/88 (19%), Positives = 33/88 (37%), Gaps = 8/88 (9%)

Query: 100 RPHAVAAVLRNITLNEERYASFIELQDKLHQNICRKRTLVAIGTHDLDTIKGPFIYDAKP 159
            P  +  V+R +        S   LQ++LH+   R      +   +  +++      A  
Sbjct: 1   CPRYLGRVIRGVKNT---RPSPEWLQERLHRAGIRP-INNVVDITNYVSLETGQPLHAFD 56

Query: 160 PSEIRFQ--PLNQTKEYSGTEIMDLYAT 185
             +I+ +  PL + KE  G +   L   
Sbjct: 57  LDKIKGKDIPLRRAKE--GEKFETLDGK 82

This domain is found in tRNA synthetase beta subunits as well as in some non tRNA synthetase proteins. Length = 174

>gnl|CDD|223150 COG0072, PheT, Phenylalanyl-tRNA synthetase beta subunit [Translation, ribosomal structure and biogenesis]

 Score = 50.3 bits (121), Expect = 5e-07
 Identities = 20/150 (13%), Positives = 48/150 (32%), Gaps = 7/150 (4%)

Query: 31  DEEFASLCFAFGLELDEVTSEKQIISKEQGADNSKGASEDVIYRIDVPANRYDLLCLEG- 89
               A      G+  +        +   +  D            +++ A +Y      G 
Sbjct: 21  TPNRADCLSMLGIARELAAEYDLKLEFPKIRDLESAEGLARKIFLEIEAGKYACPRYAGR 80

Query: 90  LYNGLMTSQIRPHAVAAVLRNITLNEERYASFIELQDKLHQNICRKRTLVAIGTHDLDTI 149
           +  G+  +   P  + A LR + +      + +++ + +H  + + R    IG  D    
Sbjct: 81  VIKGVKVNAPSPLWLQARLRGVGIR--PINNLVDITNYVHLELGQPRHAFDIGKIDG--- 135

Query: 150 KGPFIYDAKPPSEIRFQPLNQTKEYSGTEI 179
               +  AK    + F    + +  +G  +
Sbjct: 136 -KIPVRYAKEGETLVFLDGKERELLTGDLV 164

Length = 650

>gnl|CDD|223150 COG0072, PheT, Phenylalanyl-tRNA synthetase beta subunit [Translation, ribosomal structure and biogenesis]

 Score = 50.3 bits (121), Expect = 5e-07
 Identities = 17/97 (17%), Positives = 36/97 (37%), Gaps = 7/97 (7%)

Query: 172 KEYSGTEIMDLYATSQIRPHAVAAVLRNITLNEERYASFIELQDKLHQNICRKRTLVAIG 231
             Y+G  I  +   +   P  + A LR + +      + +++ + +H  + + R    IG
Sbjct: 75  PRYAGRVIKGVK-VNAPSPLWLQARLRGVGIR--PINNLVDITNYVHLELGQPRHAFDIG 131

Query: 232 THDLDTIKGPFIYDAKPPSEIRFQPLNQTKEYTGTEI 268
             D        +  AK    + F    + +  TG  +
Sbjct: 132 KIDG----KIPVRYAKEGETLVFLDGKERELLTGDLV 164

Length = 650

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	273
KOG2472|consensus	578		100.0
PLN02265	597	probable phenylalanyl-tRNA synthetase beta chain	100.0
PRK09616	552	pheT phenylalanyl-tRNA synthetase subunit beta; Re	99.96
TIGR00471	551	pheT_arch phenylalanyl-tRNA synthetase, beta subun	99.95
KOG2472|consensus	578		99.92
PLN02265	597	probable phenylalanyl-tRNA synthetase beta chain	99.8
TIGR00471	551	pheT_arch phenylalanyl-tRNA synthetase, beta subun	99.4
PRK09616	552	pheT phenylalanyl-tRNA synthetase subunit beta; Re	99.36
TIGR00472	798	pheT_bact phenylalanyl-tRNA synthetase, beta subun	99.34
COG0072	650	PheT Phenylalanyl-tRNA synthetase beta subunit [Tr	99.28
PRK00629	791	pheT phenylalanyl-tRNA synthetase subunit beta; Re	99.21
COG0072	650	PheT Phenylalanyl-tRNA synthetase beta subunit [Tr	98.75
PF03483	174	B3_4: B3/4 domain; InterPro: IPR005146 This entry	98.54
PF03483	174	B3_4: B3/4 domain; InterPro: IPR005146 This entry	98.21
smart00874	71	B5 tRNA synthetase B5 domain. This domain is found	97.8
smart00873	174	B3_4 B3/4 domain. This domain is found in tRNA syn	97.7
smart00873	174	B3_4 B3/4 domain. This domain is found in tRNA syn	97.22
TIGR00472	798	pheT_bact phenylalanyl-tRNA synthetase, beta subun	97.16
PF03484	70	B5: tRNA synthetase B5 domain; InterPro: IPR005147	96.71
PRK00629	791	pheT phenylalanyl-tRNA synthetase subunit beta; Re	96.67
CHL00192	704	syfB phenylalanyl-tRNA synthetase beta chain; Prov	96.46

>KOG2472|consensus

Probab=100.00  E-value=1.8e-51  Score=400.19  Aligned_cols=181  Identities=58%  Similarity=0.949  Sum_probs=169.6

Q ss_pred             hhHHHhcCCCChHHHHHHhhhhCccccccchhhhhhhhhccCCCCCCCCCceEEEEecCCCCcccchhhhhhhhh-----
Q psy14335         20 VLPSTVAGHGTDEEFASLCFAFGLELDEVTSEKQIISKEQGADNSKGASEDVIYRIDVPANRYDLLCLEGLYNGL-----   94 (273)
Q Consensus        20 ~l~~~lG~~~~~ee~~~llf~~g~Eld~~~~e~~~~~~~~~~~~~~~~~~~~~~kiEi~~nRpDLls~eGlaraL-----   94 (273)
                      .+|.++|++||++||+++||+||+|+|++++|+++..++|+...+.+.++++.|||++|||||||+|+||++++|     
T Consensus        10 ~l~~~LGk~yt~~ef~elcfeFgleldeit~e~a~~~ke~~~~~~~gane~~~ykidipANrydllC~egl~qalrvf~~   89 (578)
T KOG2472|consen   10 HLFRALGKSYTDREFDELCFEFGLELDEITTEKAFAMKEQGSLVEAGSNEEVRYKIDIPANRYDLLCLEGLAQALRVFPR   89 (578)
T ss_pred             HHHHHhccccchhhhhhhhhhhccccccchhHHHhhhhhhcchhhccCCcceeeehhcccccccccchHHHHHHHHhccc
Confidence            367789999999999999999999999999999999999999999888899999999999999999999999999     


Q ss_pred             ------------------------ccCCCCceeEEEEEecCcCC-HHHHHHHHHHHHHHHHHhhhccceeeeeeecCCCC
Q psy14335         95 ------------------------MTSQIRPHAVAAVLRNITLN-EERYASFIELQDKLHQNICRKRTLVAIGTHDLDTI  149 (273)
Q Consensus        95 ------------------------~v~~iRPyi~~avvr~v~l~-~~~lk~~I~~QeKLH~~igrkR~~vaIGtHDld~i  149 (273)
                                              ++.+||||++|||+|||+|+ +++|+|||++|+|||+|+||+|++|||||||||++
T Consensus        90 ~~~~p~yk~~~~s~t~~~k~~v~~~t~qIRP~~v~aVir~v~l~~~dsy~sFIdlQdKLHqnicrnRtLvAiGTHDLDt~  169 (578)
T KOG2472|consen   90 ETEFPSYKLQDFSSTKRQKLIVKPETSQIRPFAVCAVIRNVSLDPPDSYKSFIDLQDKLHQNICRNRTLVAIGTHDLDTI  169 (578)
T ss_pred             cCCCCcceeeccccccceEEEEcccccccchHHHHHHHhcCccCchhhhHhHHhHHHHHHHHHHhhccccccccccchhc
Confidence                                    56789999999999999999 89999999999999999999999999999999999


Q ss_pred             CCCeEEeecCCCCceeeeCCCCCcccHHHHHHhhcc-cccccc-------eeeEEEEec
Q psy14335        150 KGPFIYDAKPPSEIRFQPLNQTKEYSGTEIMDLYAT-SQIRPH-------AVAAVLRNI  200 (273)
Q Consensus       150 ~~P~~Y~a~~p~~i~fvPL~~~~e~t~~elLe~~ek-~~IRPy-------iv~pVLr~v  200 (273)
                      ++||+|.|.+|++|+|+|||+++++|+.|+|+.|+. .++..|       .++||+.+-
T Consensus       170 qgPf~Y~Al~peei~f~PLNqtre~~~~eL~~~y~~d~~l~rYlhII~~sPvypvi~Ds  228 (578)
T KOG2472|consen  170 QGPFEYEALPPEEIKFKPLNQTREVTASELMSFYKRDMHLKRYLHIIENSPVYPVIYDS  228 (578)
T ss_pred             cCCeeeeeeChhhcCcccchhhhccccccccccccCccchhhhehhhcCCCccceeeCC
Confidence            999999999999999999999999999999999987 555555       477777554

>PLN02265 probable phenylalanyl-tRNA synthetase beta chain

Probab=100.00  E-value=8.1e-44  Score=358.22  Aligned_cols=185  Identities=56%  Similarity=0.947  Sum_probs=165.4

Q ss_pred             ccchhhHHhhhhhHHHhcCCCChHHHHHHhhhhCccccccchhhhhhhhhccCCC----CCCCCCceEEEEecCCCCccc
Q psy14335          9 DLRLSDLLRTLVLPSTVAGHGTDEEFASLCFAFGLELDEVTSEKQIISKEQGADN----SKGASEDVIYRIDVPANRYDL   84 (273)
Q Consensus         9 ~~~~~~l~~~~~l~~~lG~~~~~ee~~~llf~~g~Eld~~~~e~~~~~~~~~~~~----~~~~~~~~~~kiEi~~nRpDL   84 (273)
                      .++++||+++      +|++||++||+++||+||+|+|++++|+++..+++|.++    +.+.+++.+++||++|||||+
T Consensus         5 ~~~~~~l~~~------~g~~~~~~~~~~~~~~~g~e~d~~~~e~~~~~~~~~~~~~~~~~~~~~~d~i~eieitpNR~Dl   78 (597)
T PLN02265          5 SVGRDRLFAA------LGRTYTQEEFDELCFEFGIELDDVTTEKAIIRKEKHLDEEEDGGADDDEEVIYKIDVPANRYDL   78 (597)
T ss_pred             EEcHHHHHHH------hCCCCCHHHHHHHHHHhCceeccccccccccccccccccccccccccCCceEEEEEeCCCcHHH
Confidence            5778888888      999999999999999999999999888887778887764    356777889999999999999


Q ss_pred             chhhhhhhhh------------c-----------------cCCCCceeEEEEEecCcCCHHHHHHHHHHHHHHHHHhhhc
Q psy14335         85 LCLEGLYNGL------------M-----------------TSQIRPHAVAAVLRNITLNEERYASFIELQDKLHQNICRK  135 (273)
Q Consensus        85 ls~eGlaraL------------~-----------------v~~iRPyi~~avvr~v~l~~~~lk~~I~~QeKLH~~igrk  135 (273)
                      ||++||||+|            .                 +.++|||++|||+|||++++++|+|+|++|+|||++.||+
T Consensus        79 ls~~GiARel~a~~g~~~~p~~~~~~~~~~~~~~v~V~~~~~~~rp~~~~~vi~~v~~~~~~~~Sp~~lQerL~~~g~R~  158 (597)
T PLN02265         79 LCLEGLARALRVFLGTEPIPTYRLAEISKGSILKMHVKPETSLIRPFVVCAVLRGVTFDEARYNSFIDLQDKLHQNICRR  158 (597)
T ss_pred             hhHHHHHHHHHHHhCCCCCCccccccCCCCcceEEEEcccccccCceEEEEEEeCcccCccccCCHHHHHHHHHHhcCCc
Confidence            9999999999            0                 1347999999999999999999999999999999999999


Q ss_pred             cceeeeeeecCCCCCCCeEEeecCCCCceeeeCCCCCcccHHHHHHhhcc-cccccc-------eeeEEEEe
Q psy14335        136 RTLVAIGTHDLDTIKGPFIYDAKPPSEIRFQPLNQTKEYSGTEIMDLYAT-SQIRPH-------AVAAVLRN  199 (273)
Q Consensus       136 R~~vaIGtHDld~i~~P~~Y~a~~p~~i~fvPL~~~~e~t~~elLe~~ek-~~IRPy-------iv~pVLr~  199 (273)
                      |++|+|||||||+|++||+|++.+|++++|+||++++|||++|||+.|++ .++++|       ..+||+.|
T Consensus       159 r~~VdIgn~DldkI~g~i~yr~~~~~~~~f~~Ld~~~e~~~~eil~~~~~~~~L~~Y~~ii~~~~~~~vI~D  230 (597)
T PLN02265        159 RTLVAIGTHDLDTLQGPFTYEALPPEDINFVPLKQTKSFRADELMEFYKSDMKLKKFLHIIENSPVFPVIYD  230 (597)
T ss_pred             ceEEEEeeccHHHcCCCeEEEEcCCCceEEEECCCCCccCHHHHhhhcccCcccccccccccCCCCceEEEe
Confidence            99999999999999999999999999889999999999999999999988 555533       34566543

>PRK09616 pheT phenylalanyl-tRNA synthetase subunit beta; Reviewed

Probab=99.96  E-value=1.5e-28  Score=245.52  Aligned_cols=150  Identities=39%  Similarity=0.565  Sum_probs=138.0

Q ss_pred             ccchhhHHhhhhhHHHhcCCCChHHHHHHhhhhCccccccchhhhhhhhhccCCCCCCCCCceEEEEecCCCCcccchhh
Q psy14335          9 DLRLSDLLRTLVLPSTVAGHGTDEEFASLCFAFGLELDEVTSEKQIISKEQGADNSKGASEDVIYRIDVPANRYDLLCLE   88 (273)
Q Consensus         9 ~~~~~~l~~~~~l~~~lG~~~~~ee~~~llf~~g~Eld~~~~e~~~~~~~~~~~~~~~~~~~~~~kiEi~~nRpDLls~e   88 (273)
                      ++++++|+++      +|.++++++|.++|+.+|+|+++..                    +.+++||++|||||+||++
T Consensus         5 ~~~~~~l~~~------~~~~~~~~~l~~~l~~~G~e~~~~~--------------------D~ileieiTpNR~D~ls~~   58 (552)
T PRK09616          5 RVNKDDLERL------IGIDLEDDELEDLLPMLKCEVEEIE--------------------DDEIKIEFNPDRPDLLSVE   58 (552)
T ss_pred             EEcHHHHHHH------HCCCCCHHHHHHHHHHcCCccccCC--------------------CceEEEEcCCCchhhhhHH
Confidence            5789999999      9999999999999999999998532                    2379999999999999999


Q ss_pred             hhhhhh----------------------c----cCCCCceeEEEEEecCcCCHHHHHHHHHHHHHHHHHhhhccceeeee
Q psy14335         89 GLYNGL----------------------M----TSQIRPHAVAAVLRNITLNEERYASFIELQDKLHQNICRKRTLVAIG  142 (273)
Q Consensus        89 GlaraL----------------------~----v~~iRPyi~~avvr~v~l~~~~lk~~I~~QeKLH~~igrkR~~vaIG  142 (273)
                      ||||.|                      .    +.+.||+.+|++++||++.+.++++.+.+|+|||.++|++|++++||
T Consensus        59 GiARelaa~~~~~~~~p~~~~~~~~~~v~v~~~~~~~cp~y~~~~i~~v~v~~s~~~~P~wlq~rL~~~~Gq~r~~~pi~  138 (552)
T PRK09616         59 GLARALRGFLGIETGLPKYEVKDSDVKVEVDEEVPEIRPYIAGAVVRGVKLDDEALKSLIQLQEKLHWTIGRKRKKVAIG  138 (552)
T ss_pred             HHHHHHHHHhCCCCCCCceeecCCceEEEECCCccccCCeEEEEEEECCccCHHHHHhHHHHHHHHHHHhccccccceeE
Confidence            999988                      0    11589999999999999998889999999999999999999999999


Q ss_pred             eecCCCCCCCeEEeecCCCCceeeeCCCCCcccHHHHHHhhcc
Q psy14335        143 THDLDTIKGPFIYDAKPPSEIRFQPLNQTKEYSGTEIMDLYAT  185 (273)
Q Consensus       143 tHDld~i~~P~~Y~a~~p~~i~fvPL~~~~e~t~~elLe~~ek  185 (273)
                      +||+|+|++|++|+..++.+ .|+||+.++++++.||++.+++
T Consensus       139 ~~Dldki~~~i~~r~a~~~e-~f~~L~~~~~~~~~e~~~~~~~  180 (552)
T PRK09616        139 IHDLDKIKPPIYYKAVDPDE-KFVPLGFDEEMTLREILEKHPK  180 (552)
T ss_pred             eecHHHCCCCeEEEEeCCCC-eEeeCCCCceeCHHHHHhhCcc
Confidence            99999999999999999999 5999999889999999998776

>TIGR00471 pheT_arch phenylalanyl-tRNA synthetase, beta subunit

Probab=99.95  E-value=7.8e-28  Score=240.45  Aligned_cols=152  Identities=38%  Similarity=0.530  Sum_probs=133.2

Q ss_pred             ccchhhHHhhhhhHHHhcCCCChHHHHHHhhhhCccccccchhhhhhhhhccCCCCCCCCCceEEEEecCCCCcccchhh
Q psy14335          9 DLRLSDLLRTLVLPSTVAGHGTDEEFASLCFAFGLELDEVTSEKQIISKEQGADNSKGASEDVIYRIDVPANRYDLLCLE   88 (273)
Q Consensus         9 ~~~~~~l~~~~~l~~~lG~~~~~ee~~~llf~~g~Eld~~~~e~~~~~~~~~~~~~~~~~~~~~~kiEi~~nRpDLls~e   88 (273)
                      ++.+++|+++      + ...+.+++.+.++..|+|+|++.++                  ..+++||++|||||+||++
T Consensus         5 ~~~~~~l~~~------l-~~~~~~~l~~~l~~~~~eve~~~~~------------------~~i~eieiTpNR~D~lS~~   59 (551)
T TIGR00471         5 TVYKDDLEDL------L-IGTDRDEILEELPMMGDEIEGFDEE------------------SPEIKVEFNPNRPDLLSVE   59 (551)
T ss_pred             EEcHHHHHHH------h-cCCCHHHHHHHhcccccccccccCC------------------cceEEEEcCCCCchhhhHH
Confidence            5788999999      4 3355677777777777777655311                  2469999999999999999


Q ss_pred             hhhhhh----------------------cc----CCCCceeEEEEEecCcCCHHHHHHHHHHHHHHHHHhhhccceeeee
Q psy14335         89 GLYNGL----------------------MT----SQIRPHAVAAVLRNITLNEERYASFIELQDKLHQNICRKRTLVAIG  142 (273)
Q Consensus        89 GlaraL----------------------~v----~~iRPyi~~avvr~v~l~~~~lk~~I~~QeKLH~~igrkR~~vaIG  142 (273)
                      ||||.|                      .+    ...||+.+|++++||++++++++|.+++|+|||.+.||.|+.++||
T Consensus        60 GiARel~a~~~~~~~~p~~~~~~~~~~v~v~~~~~~~cp~y~~~vi~gv~~~~~~~~Sp~wlq~rL~~~g~R~in~l~ih  139 (551)
T TIGR00471        60 GLARSLRGYLGIEKGLKSYDSKKGDVKLTVDESVLQIRPFITGAVVKGIILNDKVLESLIELQEKLHWNIGRNRRKVAIG  139 (551)
T ss_pred             HHHHHHHHHhCCCCCCcceecCCCceEEEECCcccccCCeEEEEEEeCCccChhHHhhHHHHHHHHHHhhCcccceeeEE
Confidence            999998                      01    1479999999999999999999999999999999999999999999


Q ss_pred             eecCCCCCCCeEEeecCCCCceeeeCCCCCcccHHHHHHhhcc
Q psy14335        143 THDLDTIKGPFIYDAKPPSEIRFQPLNQTKEYSGTEIMDLYAT  185 (273)
Q Consensus       143 tHDld~i~~P~~Y~a~~p~~i~fvPL~~~~e~t~~elLe~~ek  185 (273)
                      +||+|||++|++|+|.+++..+|+||+.+.+++.++++++|++
T Consensus       140 afD~dki~~~i~vr~~a~~ge~f~~Ld~~~~L~~~~~~~~~~~  182 (551)
T TIGR00471       140 IHDLDKVEFPFHYKAVSPNGIKFVPLNSDQEMTPDEILEEHPK  182 (551)
T ss_pred             eccHHhCCCCeEEEEECCCCCEEEECCCCCccCHHHHHhhCcc
Confidence            9999999999999999999889999999999999999998876

Every known example of the phenylalanyl-tRNA synthetase, except the monomeric form of mitochondrial, is an alpha 2 beta 2 heterotetramer. The beta subunits break into two subfamilies that are considerably different in sequence, length, and pattern of gaps. This model represents the subfamily that includes the beta subunit from eukaryotic cytosol, the Archaea, and spirochetes.

>KOG2472|consensus

Probab=99.92  E-value=6.8e-27  Score=228.68  Aligned_cols=93  Identities=66%  Similarity=1.077  Sum_probs=89.3

Q ss_pred             Hhhcc-cccccceeeEEEEecccC-HHHHHHHHHHHHHHHHHhhcccceeEEeeccCCCCCCCeeeeccCCCCceeeeCC
Q psy14335        181 DLYAT-SQIRPHAVAAVLRNITLN-EERYASFIELQDKLHQNICRKRTLVAIGTHDLDTIKGPFIYDAKPPSEIRFQPLN  258 (273)
Q Consensus       181 e~~ek-~~IRPyiv~pVLr~v~l~-~~~lk~fI~~QeKLH~~igrkR~~~aIGtHDldki~~P~~Y~a~~p~~i~f~PL~  258 (273)
                      ..+++ ++||||.+++|+|||+|+ +++|++||++|+|||+|+||+|+++||||||||++++||.|.|.+|++|+|+|||
T Consensus       110 ~v~~~t~qIRP~~v~aVir~v~l~~~dsy~sFIdlQdKLHqnicrnRtLvAiGTHDLDt~qgPf~Y~Al~peei~f~PLN  189 (578)
T KOG2472|consen  110 IVKPETSQIRPFAVCAVIRNVSLDPPDSYKSFIDLQDKLHQNICRNRTLVAIGTHDLDTIQGPFEYEALPPEEIKFKPLN  189 (578)
T ss_pred             EEcccccccchHHHHHHHhcCccCchhhhHhHHhHHHHHHHHHHhhccccccccccchhccCCeeeeeeChhhcCcccch
Confidence            45555 899999999999999999 9999999999999999999999999999999999999999999999999999999


Q ss_pred             CCCccCHHHHhhhcC
Q psy14335        259 QTKEYTGTEIMDLYA  273 (273)
Q Consensus       259 ~~~e~t~~eil~~~~  273 (273)
                      +++++|+.|++++|.
T Consensus       190 qtre~~~~eL~~~y~  204 (578)
T KOG2472|consen  190 QTREVTASELMSFYK  204 (578)
T ss_pred             hhhcccccccccccc
Confidence            999999999999984

>PLN02265 probable phenylalanyl-tRNA synthetase beta chain

Probab=99.80  E-value=3.7e-20  Score=187.15  Aligned_cols=88  Identities=65%  Similarity=1.120  Sum_probs=85.1

Q ss_pred             cccccceeeEEEEecccCHHHHHHHHHHHHHHHHHhhcccceeEEeeccCCCCCCCeeeeccCCCCceeeeCCCCCccCH
Q psy14335        186 SQIRPHAVAAVLRNITLNEERYASFIELQDKLHQNICRKRTLVAIGTHDLDTIKGPFIYDAKPPSEIRFQPLNQTKEYTG  265 (273)
Q Consensus       186 ~~IRPyiv~pVLr~v~l~~~~lk~fI~~QeKLH~~igrkR~~~aIGtHDldki~~P~~Y~a~~p~~i~f~PL~~~~e~t~  265 (273)
                      ..+|||.++++++||++++++|+++|++|+|||++.||+|++|+||+||||+|++||+|++.+|++++|+||+.+++||+
T Consensus       120 ~~~rp~~~~~vi~~v~~~~~~~~Sp~~lQerL~~~g~R~r~~VdIgn~DldkI~g~i~yr~~~~~~~~f~~Ld~~~e~~~  199 (597)
T PLN02265        120 SLIRPFVVCAVLRGVTFDEARYNSFIDLQDKLHQNICRRRTLVAIGTHDLDTLQGPFTYEALPPEDINFVPLKQTKSFRA  199 (597)
T ss_pred             cccCceEEEEEEeCcccCccccCCHHHHHHHHHHhcCCcceEEEEeeccHHHcCCCeEEEEcCCCceEEEECCCCCccCH
Confidence            56899999999999999999999999999999999999999999999999999999999999999889999999999999


Q ss_pred             HHHhhhcC
Q psy14335        266 TEIMDLYA  273 (273)
Q Consensus       266 ~eil~~~~  273 (273)
                      +||+++|.
T Consensus       200 ~eil~~~~  207 (597)
T PLN02265        200 DELMEFYK  207 (597)
T ss_pred             HHHhhhcc
Confidence            99999873

>TIGR00471 pheT_arch phenylalanyl-tRNA synthetase, beta subunit

Probab=99.40  E-value=6.2e-13  Score=133.59  Aligned_cols=84  Identities=51%  Similarity=0.787  Sum_probs=80.5

Q ss_pred             ccccceeeEEEEecccCHHHHHHHHHHHHHHHHHhhcccceeEEeeccCCCCCCCeeeeccCCCCceeeeCCCCCccCHH
Q psy14335        187 QIRPHAVAAVLRNITLNEERYASFIELQDKLHQNICRKRTLVAIGTHDLDTIKGPFIYDAKPPSEIRFQPLNQTKEYTGT  266 (273)
Q Consensus       187 ~IRPyiv~pVLr~v~l~~~~lk~fI~~QeKLH~~igrkR~~~aIGtHDldki~~P~~Y~a~~p~~i~f~PL~~~~e~t~~  266 (273)
                      ..+|+..+.+++||+++++++++++.+|+|||.+.||.|+.++||+||+|||++|++|++.+++..+|+||+..++++.+
T Consensus        95 ~~cp~y~~~vi~gv~~~~~~~~Sp~wlq~rL~~~g~R~in~l~ihafD~dki~~~i~vr~~a~~ge~f~~Ld~~~~L~~~  174 (551)
T TIGR00471        95 QIRPFITGAVVKGIILNDKVLESLIELQEKLHWNIGRNRRKVAIGIHDLDKVEFPFHYKAVSPNGIKFVPLNSDQEMTPD  174 (551)
T ss_pred             ccCCeEEEEEEeCCccChhHHhhHHHHHHHHHHhhCcccceeeEEeccHHhCCCCeEEEEECCCCCEEEECCCCCccCHH
Confidence            68999999999999999999999999999999999999999999999999999999999999998899999999999999


Q ss_pred             HHhh
Q psy14335        267 EIMD  270 (273)
Q Consensus       267 eil~  270 (273)
                      ++++
T Consensus       175 ~~~~  178 (551)
T TIGR00471       175 EILE  178 (551)
T ss_pred             HHHh
Confidence            8765

Every known example of the phenylalanyl-tRNA synthetase, except the monomeric form of mitochondrial, is an alpha 2 beta 2 heterotetramer. The beta subunits break into two subfamilies that are considerably different in sequence, length, and pattern of gaps. This model represents the subfamily that includes the beta subunit from eukaryotic cytosol, the Archaea, and spirochetes.

>PRK09616 pheT phenylalanyl-tRNA synthetase subunit beta; Reviewed

Probab=99.36  E-value=1.2e-12  Score=131.38  Aligned_cols=83  Identities=49%  Similarity=0.755  Sum_probs=79.1

Q ss_pred             ccccceeeEEEEecccCHHHHHHHHHHHHHHHHHhhcccceeEEeeccCCCCCCCeeeeccCCCCceeeeCCCCCccCHH
Q psy14335        187 QIRPHAVAAVLRNITLNEERYASFIELQDKLHQNICRKRTLVAIGTHDLDTIKGPFIYDAKPPSEIRFQPLNQTKEYTGT  266 (273)
Q Consensus       187 ~IRPyiv~pVLr~v~l~~~~lk~fI~~QeKLH~~igrkR~~~aIGtHDldki~~P~~Y~a~~p~~i~f~PL~~~~e~t~~  266 (273)
                      .++|+..+.+++||++.+.++++.+.+|+|||..+|++|++++||+||+|+|++|+.|++.++.+ .|+||+.+++++++
T Consensus        94 ~~cp~y~~~~i~~v~v~~s~~~~P~wlq~rL~~~~Gq~r~~~pi~~~Dldki~~~i~~r~a~~~e-~f~~L~~~~~~~~~  172 (552)
T PRK09616         94 EIRPYIAGAVVRGVKLDDEALKSLIQLQEKLHWTIGRKRKKVAIGIHDLDKIKPPIYYKAVDPDE-KFVPLGFDEEMTLR  172 (552)
T ss_pred             ccCCeEEEEEEECCccCHHHHHhHHHHHHHHHHHhccccccceeEeecHHHCCCCeEEEEeCCCC-eEeeCCCCceeCHH
Confidence            68999999999999999888999999999999999999999999999999999999999999999 59999998899999


Q ss_pred             HHhh
Q psy14335        267 EIMD  270 (273)
Q Consensus       267 eil~  270 (273)
                      ||++
T Consensus       173 e~~~  176 (552)
T PRK09616        173 EILE  176 (552)
T ss_pred             HHHh
Confidence            8765

>TIGR00472 pheT_bact phenylalanyl-tRNA synthetase, beta subunit, non-spirochete bacterial

Probab=99.34  E-value=1.2e-12  Score=136.57  Aligned_cols=98  Identities=22%  Similarity=0.360  Sum_probs=84.5

Q ss_pred             ceEEEEecCCCCcccchhhhhhhhh-------------c-----------------cCCCCceeEEEEEecCcCCHHHHH
Q psy14335         70 DVIYRIDVPANRYDLLCLEGLYNGL-------------M-----------------TSQIRPHAVAAVLRNITLNEERYA  119 (273)
Q Consensus        70 ~~~~kiEi~~nRpDLls~eGlaraL-------------~-----------------v~~iRPyi~~avvr~v~l~~~~lk  119 (273)
                      +.+++||++|||||+||++||||.|             .                 ....||+..+++++||++++    
T Consensus       156 D~i~ei~itpNR~D~lS~~GiARelaa~~~~~l~~~~~~~~~~~~~~~~~~~v~v~~~~~c~~y~~~~i~~v~~~~----  231 (798)
T TIGR00472       156 DDIIEVSITPNRGDCLSILGIARELAALFDLPLETPVPFEPETTETIDEGFKIEIEDPEVCPFYLGRVIKGVKVKP----  231 (798)
T ss_pred             CeEEEEecCCChHHHHHhHHHHHHHHHhhCCCCCCccccccccccccCCceEEEecCCCCCccEEEEEEeCCCCCC----
Confidence            4689999999999999999999988             0                 02469999999999999985    


Q ss_pred             HHHHHHHHHHHHhhhc-------------cceeeeeeecCCCCCCCeEE-eecCCCCceeeeCCCCC
Q psy14335        120 SFIELQDKLHQNICRK-------------RTLVAIGTHDLDTIKGPFIY-DAKPPSEIRFQPLNQTK  172 (273)
Q Consensus       120 ~~I~~QeKLH~~igrk-------------R~~vaIGtHDld~i~~P~~Y-~a~~p~~i~fvPL~~~~  172 (273)
                      +.+.+|++||.+-.|.             |+.++||.||+|+|++|+.| +....++ +|+||+..+
T Consensus       232 sp~wl~~~L~~~g~~~iN~ivDi~Nyv~l~~g~pih~yD~dki~~~~~~vr~~~~~e-~~~~L~~~~  297 (798)
T TIGR00472       232 SPLWLKERLRRSGIRPINNIVDITNYVMLELGQPLHAFDADKIEGSNIEVRSAKEGE-SFTTLDGKE  297 (798)
T ss_pred             ChHHHHHHHHHcCCCCccHHHHHHHHHHHHhCccceeeeHhHcCCCeEEEEEcCCCC-EEEccCCeE
Confidence            6899999999996665             99999999999999999999 5444444 999999764

Every known example of the phenylalanyl-tRNA synthetase, except the monomeric form of mitochondrial, is an alpha 2 beta 2 heterotetramer. The beta subunits break into two subfamilies that are considerably different in sequence, length, and pattern of gaps. This model represents the subfamily that includes the beta subunit from Bacteria other than spirochetes, as well as a chloroplast-encoded form from Porphyra purpurea. The chloroplast-derived sequence is considerably shorter at the amino end, however.

>COG0072 PheT Phenylalanyl-tRNA synthetase beta subunit [Translation, ribosomal structure and biogenesis]

Probab=99.28  E-value=2.8e-13  Score=138.63  Aligned_cols=146  Identities=17%  Similarity=0.202  Sum_probs=120.3

Q ss_pred             ccccchhhHHhhhhhHHHhcCCCChHHHHHHhhhhCccccccchhhhhhhhhccCCCCCCCCCceEEEEecCCCCcccch
Q psy14335          7 LTDLRLSDLLRTLVLPSTVAGHGTDEEFASLCFAFGLELDEVTSEKQIISKEQGADNSKGASEDVIYRIDVPANRYDLLC   86 (273)
Q Consensus         7 ~~~~~~~~l~~~~~l~~~lG~~~~~ee~~~llf~~g~Eld~~~~e~~~~~~~~~~~~~~~~~~~~~~kiEi~~nRpDLls   86 (273)
                      .....+.+|.+.+     +.... .....+.+..+|++.|.....                    ..++++|+.| |++|
T Consensus         3 ~~~~~~~~L~d~i-----~e~~~-tpnr~D~ls~~GiarE~aa~~--------------------~~~~~~~~~~-d~~~   55 (650)
T COG0072           3 TIVREYLDLDDLI-----IEISI-TPNRADCLSMLGIARELAAEY--------------------DLKLEFPKIR-DLES   55 (650)
T ss_pred             chhhhhhhhccce-----eeccC-CCCHHHhhccccceeehhhhc--------------------CCcccccccc-cccc
Confidence            3445566666661     12222 347889999999999754311                    1788999988 9999


Q ss_pred             hhhhhhhh----------------------ccCCCCceeEEEEEecCcCCHHHHHHHHHHHHHHHHHhhhccceeeeeee
Q psy14335         87 LEGLYNGL----------------------MTSQIRPHAVAAVLRNITLNEERYASFIELQDKLHQNICRKRTLVAIGTH  144 (273)
Q Consensus        87 ~eGlaraL----------------------~v~~iRPyi~~avvr~v~l~~~~lk~~I~~QeKLH~~igrkR~~vaIGtH  144 (273)
                      .+|+++-+                      .+...|||..+++++|+.+.  .+++++|+|+++|+++||.|.+.++|.|
T Consensus        56 ~~~~~~~~~v~ie~~~~~~~~~~~~~i~~v~~~~~sP~~~~~~l~~~gir--~in~lVDitnyv~l~~Gqp~h~~d~~~~  133 (650)
T COG0072          56 AEGLARKIFLEIEAGKYACPRYAGRVIKGVKVNAPSPLWLQARLRGVGIR--PINNLVDITNYVHLELGQPRHAFDIGKI  133 (650)
T ss_pred             cccccceeEeecccccccCCccceEEEECcccCCCCCHHHHHHHHhcCCC--cHHHHHHHHHHHHHHhCCcchHhhhhhc
Confidence            99999733                      22468999999999999998  8999999999999999999999999999


Q ss_pred             cCCCCCCCeEEeecCCCCceeeeCCCCCcccHHHHHHhhcc
Q psy14335        145 DLDTIKGPFIYDAKPPSEIRFQPLNQTKEYSGTEIMDLYAT  185 (273)
Q Consensus       145 Dld~i~~P~~Y~a~~p~~i~fvPL~~~~e~t~~elLe~~ek  185 (273)
                      |.   +.|++|.+..++ +.|.|++..+++|..++++.+++
T Consensus       134 ~~---~i~vr~a~~~e~-~~~ld~~~~~l~~~~~vi~d~~~  170 (650)
T COG0072         134 DG---KIPVRYAKEGET-LVFLDGKERELLTGDLVIADHEK  170 (650)
T ss_pred             cC---ceEEEEccCCCc-eEecCCcceeeCCCCEEEEeCCC
Confidence            99   788888888876 79999999999999999999987

>PRK00629 pheT phenylalanyl-tRNA synthetase subunit beta; Reviewed

Probab=99.21  E-value=1.7e-11  Score=127.92  Aligned_cols=103  Identities=23%  Similarity=0.313  Sum_probs=86.5

Q ss_pred             ceEEEEecCCCCcccchhhhhhhhh--------------------------cc--CCCCceeEEEEEecCcCCHHHHHHH
Q psy14335         70 DVIYRIDVPANRYDLLCLEGLYNGL--------------------------MT--SQIRPHAVAAVLRNITLNEERYASF  121 (273)
Q Consensus        70 ~~~~kiEi~~nRpDLls~eGlaraL--------------------------~v--~~iRPyi~~avvr~v~l~~~~lk~~  121 (273)
                      +.++.||++|||||+||+.||||.|                          .+  ...+|+..+++++||++.   ..+-
T Consensus       154 D~iiei~iTpNR~D~lS~~GiARElaa~~~~~~~~p~~~~~~~~~~~~~~v~i~~~~~c~~y~~~~i~~v~~~---~~sp  230 (791)
T PRK00629        154 DTVIEISLTPNRADCLSVRGIARELAALLGLPLKLPEIEPVPATIDDKLPVEIEDPDLCPRYAGRVIKGVKNI---APSP  230 (791)
T ss_pred             CeEEEEecCCChHHHHHhHHHHHHHHHhhCCCCCCccccccccccCCceEEEecCCCCCccEEEEEEECCCCC---CCCH
Confidence            5689999999999999999999987                          01  246999999999999964   4677


Q ss_pred             HHHHHHHHHHhhhccce-------------eeeeeecCCCCCCCeEEeecCCCCceeeeCCCCCcccHH
Q psy14335        122 IELQDKLHQNICRKRTL-------------VAIGTHDLDTIKGPFIYDAKPPSEIRFQPLNQTKEYSGT  177 (273)
Q Consensus       122 I~~QeKLH~~igrkR~~-------------vaIGtHDld~i~~P~~Y~a~~p~~i~fvPL~~~~e~t~~  177 (273)
                      +.+|++||.+-.|....             ++||.||+|+|.+|++++...+.+ +|+||+. +++++.
T Consensus       231 ~wlq~rL~~~g~~~in~ivDi~Nyv~l~~G~pi~ayD~dki~~~i~vr~~~~~e-~~~~l~~-~~~~l~  297 (791)
T PRK00629        231 LWLQERLRAAGIRPINNVVDITNYVMLELGQPLHAFDLDKIGGGIVVRRAKEGE-KLTTLDG-KERTLD  297 (791)
T ss_pred             HHHHHHHHhCCCCCcCHHHHHHHHHHHHhCCCceeeeHHHcCCceEEEECCCCC-EEEecCC-ceecCC
Confidence            99999999995555553             599999999999999999988766 9999995 566654

>COG0072 PheT Phenylalanyl-tRNA synthetase beta subunit [Translation, ribosomal structure and biogenesis]

Probab=98.75  E-value=2.9e-09  Score=109.35  Aligned_cols=80  Identities=19%  Similarity=0.283  Sum_probs=73.0

Q ss_pred             cccccceeeEEEEecccCHHHHHHHHHHHHHHHHHhhcccceeEEeeccCCCCCCCeeeeccCCCCceeeeCCCCCccCH
Q psy14335        186 SQIRPHAVAAVLRNITLNEERYASFIELQDKLHQNICRKRTLVAIGTHDLDTIKGPFIYDAKPPSEIRFQPLNQTKEYTG  265 (273)
Q Consensus       186 ~~IRPyiv~pVLr~v~l~~~~lk~fI~~QeKLH~~igrkR~~~aIGtHDldki~~P~~Y~a~~p~~i~f~PL~~~~e~t~  265 (273)
                      ...|||....+++++.+.  .+++++|+|+++|+++||.|.+.++|.||+   +.|++|.+..++ +.|.|++..+++|.
T Consensus        88 ~~~sP~~~~~~l~~~gir--~in~lVDitnyv~l~~Gqp~h~~d~~~~~~---~i~vr~a~~~e~-~~~ld~~~~~l~~~  161 (650)
T COG0072          88 NAPSPLWLQARLRGVGIR--PINNLVDITNYVHLELGQPRHAFDIGKIDG---KIPVRYAKEGET-LVFLDGKERELLTG  161 (650)
T ss_pred             CCCCCHHHHHHHHhcCCC--cHHHHHHHHHHHHHHhCCcchHhhhhhccC---ceEEEEccCCCc-eEecCCcceeeCCC
Confidence            368999999999999997  899999999999999999999999999999   888999888877 79999999999998


Q ss_pred             HHHhhh
Q psy14335        266 TEIMDL  271 (273)
Q Consensus       266 ~eil~~  271 (273)
                      .++++.
T Consensus       162 ~~vi~d  167 (650)
T COG0072         162 DLVIAD  167 (650)
T ss_pred             CEEEEe
Confidence            887654

>PF03483 B3_4: B3/4 domain; InterPro: IPR005146 This entry represents the B3/B4 domain found in tRNA synthetase beta subunits as well as in some non-tRNA synthetase proteins

Probab=98.54  E-value=2.6e-07  Score=80.19  Aligned_cols=66  Identities=27%  Similarity=0.475  Sum_probs=62.0

Q ss_pred             CceeEEEEEecCcCCHHH---------------HHHHHHHHHHHHHHhhhccceeeeeeecCCCCCCCeEEeecCCCCce
Q psy14335        100 RPHAVAAVLRNITLNEER---------------YASFIELQDKLHQNICRKRTLVAIGTHDLDTIKGPFIYDAKPPSEIR  164 (273)
Q Consensus       100 RPyi~~avvr~v~l~~~~---------------lk~~I~~QeKLH~~igrkR~~vaIGtHDld~i~~P~~Y~a~~p~~i~  164 (273)
                      +|+..+++++|++....+               +..++|+|+.+|...|+     +||.||+|+|++|++++....++ +
T Consensus         2 c~~~~~~~~~~i~~~~~sp~~L~~rL~~~g~~~iN~lvDi~N~i~l~~g~-----pi~~~D~dki~~~i~~~~~~~~e-~   75 (174)
T PF03483_consen    2 CRRYFSRVIKNINKNRPSPEWLKRRLKKSGILPINNLVDIQNYISLETGQ-----PIGAYDLDKIKGPITLRLAKGGE-K   75 (174)
T ss_dssp             SSEEEEEEEESB-TTHHH-HHHHHHHHHTT---HHHHHHHHHHHHHHHTT-----EEEEEEGGGTBSEEEEEEESTTE-E
T ss_pred             cchhhEEEEECCCCCcCCHHHHHHHHHhCCCcccccHHHHHHHHHHHhCC-----CCchhhHhHCCCCEEEEEecCCc-e
Confidence            799999999999999988               99999999999999999     99999999999999999999887 9


Q ss_pred             eeeCCCC
Q psy14335        165 FQPLNQT  171 (273)
Q Consensus       165 fvPL~~~  171 (273)
                      |+||+..
T Consensus        76 ~~~l~~~   82 (174)
T PF03483_consen   76 FTPLGGK   82 (174)
T ss_dssp             EEBTTSE
T ss_pred             EEECCCc
Confidence            9999975

This domain has a 3-layer structure, and contains a beta-sandwich fold of unusual topology, and contains a putative tRNA-binding structural motif []. In Thermus thermophilus, both the catalytic alpha- and the non-catalytic beta-subunits comprise the characteristic fold of the class II active-site domains. The presence of an RNA-binding domain, similar to that of the U1A spliceosomal protein, in the beta-subunit of tRNA synthetase indicates structural relationships among different families of RNA-binding proteins. Aminoacyl-tRNA synthetases can catalyse editing reactions to correct errors produced during amino acid activation and tRNA esterification, in order to prevent the attachment of incorrect amino acids to tRNA. The B3/B4 domain of the beta subunit contains an editing site, which lies close to the active site on the alpha subunit []. Disruption of this site abolished tRNA editing, a process that is essential for faithful translation of the genetic code.; GO: 0003723 RNA binding, 0004826 phenylalanine-tRNA ligase activity; PDB: 3L4G_P 2CXI_B 3PCO_D 2AKW_B 1B7Y_B 2ALY_B 2IY5_B 2AMC_B 1B70_B 2RHS_D ....

>PF03483 B3_4: B3/4 domain; InterPro: IPR005146 This entry represents the B3/B4 domain found in tRNA synthetase beta subunits as well as in some non-tRNA synthetase proteins

Probab=98.21  E-value=2.8e-06  Score=73.80  Aligned_cols=66  Identities=27%  Similarity=0.475  Sum_probs=60.8

Q ss_pred             ccceeeEEEEecccCHHH---------------HHHHHHHHHHHHHHhhcccceeEEeeccCCCCCCCeeeeccCCCCce
Q psy14335        189 RPHAVAAVLRNITLNEER---------------YASFIELQDKLHQNICRKRTLVAIGTHDLDTIKGPFIYDAKPPSEIR  253 (273)
Q Consensus       189 RPyiv~pVLr~v~l~~~~---------------lk~fI~~QeKLH~~igrkR~~~aIGtHDldki~~P~~Y~a~~p~~i~  253 (273)
                      .|+..+.+++|++....+               ++.++++|+.+|..+|+     +||.||+|||++|++++....++ +
T Consensus         2 c~~~~~~~~~~i~~~~~sp~~L~~rL~~~g~~~iN~lvDi~N~i~l~~g~-----pi~~~D~dki~~~i~~~~~~~~e-~   75 (174)
T PF03483_consen    2 CRRYFSRVIKNINKNRPSPEWLKRRLKKSGILPINNLVDIQNYISLETGQ-----PIGAYDLDKIKGPITLRLAKGGE-K   75 (174)
T ss_dssp             SSEEEEEEEESB-TTHHH-HHHHHHHHHTT---HHHHHHHHHHHHHHHTT-----EEEEEEGGGTBSEEEEEEESTTE-E
T ss_pred             cchhhEEEEECCCCCcCCHHHHHHHHHhCCCcccccHHHHHHHHHHHhCC-----CCchhhHhHCCCCEEEEEecCCc-e
Confidence            578899999999998888               99999999999999999     99999999999999999999887 9


Q ss_pred             eeeCCCC
Q psy14335        254 FQPLNQT  260 (273)
Q Consensus       254 f~PL~~~  260 (273)
                      |+||+..
T Consensus        76 ~~~l~~~   82 (174)
T PF03483_consen   76 FTPLGGK   82 (174)
T ss_dssp             EEBTTSE
T ss_pred             EEECCCc
Confidence            9999965

This domain has a 3-layer structure, and contains a beta-sandwich fold of unusual topology, and contains a putative tRNA-binding structural motif []. In Thermus thermophilus, both the catalytic alpha- and the non-catalytic beta-subunits comprise the characteristic fold of the class II active-site domains. The presence of an RNA-binding domain, similar to that of the U1A spliceosomal protein, in the beta-subunit of tRNA synthetase indicates structural relationships among different families of RNA-binding proteins. Aminoacyl-tRNA synthetases can catalyse editing reactions to correct errors produced during amino acid activation and tRNA esterification, in order to prevent the attachment of incorrect amino acids to tRNA. The B3/B4 domain of the beta subunit contains an editing site, which lies close to the active site on the alpha subunit []. Disruption of this site abolished tRNA editing, a process that is essential for faithful translation of the genetic code.; GO: 0003723 RNA binding, 0004826 phenylalanine-tRNA ligase activity; PDB: 3L4G_P 2CXI_B 3PCO_D 2AKW_B 1B7Y_B 2ALY_B 2IY5_B 2AMC_B 1B70_B 2RHS_D ....

>smart00874 B5 tRNA synthetase B5 domain

Probab=97.80  E-value=3.5e-05  Score=56.96  Aligned_cols=57  Identities=25%  Similarity=0.367  Sum_probs=46.5

Q ss_pred             ccchhhHHhhhhhHHHhcCCCChHHHHHHhhhhCccccccchhhhhhhhhccCCCCCCCCCceEEEEecCCCCcccchhh
Q psy14335          9 DLRLSDLLRTLVLPSTVAGHGTDEEFASLCFAFGLELDEVTSEKQIISKEQGADNSKGASEDVIYRIDVPANRYDLLCLE   88 (273)
Q Consensus         9 ~~~~~~l~~~~~l~~~lG~~~~~ee~~~llf~~g~Eld~~~~e~~~~~~~~~~~~~~~~~~~~~~kiEi~~nRpDLls~e   88 (273)
                      .++.+++.++      +|.+++.+++.++|..+|++++...+                   +..+++++|++|+|+++.+
T Consensus         5 ~~~~~~i~~l------lG~~i~~~ei~~~L~~lg~~~~~~~~-------------------~~~~~v~~P~~R~Di~~~~   59 (71)
T smart00874        5 TLRRERINRL------LGLDLSAEEIEEILKRLGFEVEVSGD-------------------DDTLEVTVPSYRFDILIEA   59 (71)
T ss_pred             EecHHHHHHH------HCCCCCHHHHHHHHHHCCCeEEecCC-------------------CCeEEEECCCCccccCccc
Confidence            5678888888      99999999999999999999964210                   1249999999999999874


Q ss_pred             hh
Q psy14335         89 GL   90 (273)
Q Consensus        89 Gl   90 (273)
                      =|
T Consensus        60 Dl   61 (71)
T smart00874       60 DL   61 (71)
T ss_pred             HH
Confidence            33

This domain is found in phenylalanine-tRNA synthetase beta subunits.

>smart00873 B3_4 B3/4 domain

Probab=97.70  E-value=6.5e-06  Score=69.58  Aligned_cols=70  Identities=21%  Similarity=0.202  Sum_probs=60.0

Q ss_pred             CceeEEEEEecCcCCHHHHHHHHHHHHHHHHHhhhccceeeeeeecCCCCCCCeEEeecCCCCce--eeeCCCCCc
Q psy14335        100 RPHAVAAVLRNITLNEERYASFIELQDKLHQNICRKRTLVAIGTHDLDTIKGPFIYDAKPPSEIR--FQPLNQTKE  173 (273)
Q Consensus       100 RPyi~~avvr~v~l~~~~lk~~I~~QeKLH~~igrkR~~vaIGtHDld~i~~P~~Y~a~~p~~i~--fvPL~~~~e  173 (273)
                      ||++.++++++++..   ..+++++|++||++.|+. ...++++|++.++..++.|.|-+.+.++  ++||+..++
T Consensus         1 ~~~~~~~~~~~~~~~---~~s~~~l~~rL~~~~~~~-~n~~vdi~n~~~l~~g~p~~~~D~d~i~~~~l~l~~~~~   72 (174)
T smart00873        1 CPRYLGRVIRGVKNT---RPSPEWLQERLHRAGIRP-INNVVDITNYVSLETGQPLHAFDLDKIKGKDIPLRRAKE   72 (174)
T ss_pred             CCcEEEEEEECCCCC---CCCHHHHHHHHHHcCCCC-cchhhhHHHHHHHHhCCCCeeEcHHHcCCCeEEEEECCC
Confidence            689999999998764   467899999999999998 8899999999999988988888888663  678876654

This domain is found in tRNA synthetase beta subunits as well as in some non tRNA synthetase proteins.

>smart00873 B3_4 B3/4 domain

Probab=97.22  E-value=5.1e-05  Score=64.12  Aligned_cols=69  Identities=20%  Similarity=0.187  Sum_probs=56.7

Q ss_pred             ccceeeEEEEecccCHHHHHHHHHHHHHHHHHhhcccceeEEeeccCCCCCCCeeeeccCCCCce--eeeCCCCC
Q psy14335        189 RPHAVAAVLRNITLNEERYASFIELQDKLHQNICRKRTLVAIGTHDLDTIKGPFIYDAKPPSEIR--FQPLNQTK  261 (273)
Q Consensus       189 RPyiv~pVLr~v~l~~~~lk~fI~~QeKLH~~igrkR~~~aIGtHDldki~~P~~Y~a~~p~~i~--f~PL~~~~  261 (273)
                      +|+..+.+++++...   ..+++.+|++||++.|+. ...++++||+.++.+++.|.+-+.+.+.  ++||+..+
T Consensus         1 ~~~~~~~~~~~~~~~---~~s~~~l~~rL~~~~~~~-~n~~vdi~n~~~l~~g~p~~~~D~d~i~~~~l~l~~~~   71 (174)
T smart00873        1 CPRYLGRVIRGVKNT---RPSPEWLQERLHRAGIRP-INNVVDITNYVSLETGQPLHAFDLDKIKGKDIPLRRAK   71 (174)
T ss_pred             CCcEEEEEEECCCCC---CCCHHHHHHHHHHcCCCC-cchhhhHHHHHHHHhCCCCeeEcHHHcCCCeEEEEECC
Confidence            577888888888763   467899999999999998 8899999999999988888888887663  56776554

This domain is found in tRNA synthetase beta subunits as well as in some non tRNA synthetase proteins.

>TIGR00472 pheT_bact phenylalanyl-tRNA synthetase, beta subunit, non-spirochete bacterial

Probab=97.16  E-value=0.00037  Score=73.48  Aligned_cols=69  Identities=20%  Similarity=0.326  Sum_probs=59.7

Q ss_pred             ccccceeeEEEEecccCHHHHHHHHHHHHHHHHHhhcc-------------cceeEEeeccCCCCCCCeee-eccCCCCc
Q psy14335        187 QIRPHAVAAVLRNITLNEERYASFIELQDKLHQNICRK-------------RTLVAIGTHDLDTIKGPFIY-DAKPPSEI  252 (273)
Q Consensus       187 ~IRPyiv~pVLr~v~l~~~~lk~fI~~QeKLH~~igrk-------------R~~~aIGtHDldki~~P~~Y-~a~~p~~i  252 (273)
                      ..+|+..+.+++||+++.    +.+.+|++||..-.|.             ++.++||.||+|+|++|+.| +.....+ 
T Consensus       214 ~~c~~y~~~~i~~v~~~~----sp~wl~~~L~~~g~~~iN~ivDi~Nyv~l~~g~pih~yD~dki~~~~~~vr~~~~~e-  288 (798)
T TIGR00472       214 EVCPFYLGRVIKGVKVKP----SPLWLKERLRRSGIRPINNIVDITNYVMLELGQPLHAFDADKIEGSNIEVRSAKEGE-  288 (798)
T ss_pred             CCCccEEEEEEeCCCCCC----ChHHHHHHHHHcCCCCccHHHHHHHHHHHHhCccceeeeHhHcCCCeEEEEEcCCCC-
Confidence            579999999999999975    6899999999996665             99999999999999999999 5444444 


Q ss_pred             eeeeCCCC
Q psy14335        253 RFQPLNQT  260 (273)
Q Consensus       253 ~f~PL~~~  260 (273)
                      +|+||+..
T Consensus       289 ~~~~L~~~  296 (798)
T TIGR00472       289 SFTTLDGK  296 (798)
T ss_pred             EEEccCCe
Confidence            99999976

Every known example of the phenylalanyl-tRNA synthetase, except the monomeric form of mitochondrial, is an alpha 2 beta 2 heterotetramer. The beta subunits break into two subfamilies that are considerably different in sequence, length, and pattern of gaps. This model represents the subfamily that includes the beta subunit from Bacteria other than spirochetes, as well as a chloroplast-encoded form from Porphyra purpurea. The chloroplast-derived sequence is considerably shorter at the amino end, however.

>PF03484 B5: tRNA synthetase B5 domain; InterPro: IPR005147 Domain B5 is found in phenylalanine-tRNA synthetase beta subunits

Probab=96.71  E-value=0.0028  Score=47.32  Aligned_cols=57  Identities=19%  Similarity=0.342  Sum_probs=42.4

Q ss_pred             ccchhhHHhhhhhHHHhcCCCChHHHHHHhhhhCccccccchhhhhhhhhccCCCCCCCCCceEEEEecCCCCcccchhh
Q psy14335          9 DLRLSDLLRTLVLPSTVAGHGTDEEFASLCFAFGLELDEVTSEKQIISKEQGADNSKGASEDVIYRIDVPANRYDLLCLE   88 (273)
Q Consensus         9 ~~~~~~l~~~~~l~~~lG~~~~~ee~~~llf~~g~Eld~~~~e~~~~~~~~~~~~~~~~~~~~~~kiEi~~nRpDLls~e   88 (273)
                      .++.+.+.++      +|.+++.+++.++|..+|++++...                    +..+.+.+|+.|+|+...+
T Consensus         5 ~~~~~~i~~~------lG~~i~~~~i~~~L~~lg~~~~~~~--------------------~~~~~v~vP~~R~Di~~~~   58 (70)
T PF03484_consen    5 TLSLDKINKL------LGIDISPEEIIKILKRLGFKVEKID--------------------GDTLEVTVPSYRFDIEHEE   58 (70)
T ss_dssp             EEEHHHHHHH------HTS---HHHHHHHHHHTT-EEEE-C--------------------TTEEEEEEETTSTT-SSHH
T ss_pred             EecHHHHHHH------hCCCCCHHHHHHHHHHCCCEEEECC--------------------CCEEEEEcCCCcCCcCccc
Confidence            4677888888      9999999999999999999997533                    1259999999999999865


Q ss_pred             hhh
Q psy14335         89 GLY   91 (273)
Q Consensus        89 Gla   91 (273)
                      =|+
T Consensus        59 Dli   61 (70)
T PF03484_consen   59 DLI   61 (70)
T ss_dssp             HHH
T ss_pred             HHH
Confidence            443

This domain has been shown to bind DNA through a winged helix-turn-helix motif []. Phenylalanine-tRNA synthetase may influence common cellular processes via DNA binding, in addition to its aminoacylation function.; GO: 0000287 magnesium ion binding, 0003723 RNA binding, 0005524 ATP binding, 0006432 phenylalanyl-tRNA aminoacylation; PDB: 2AKW_B 1B70_B 1B7Y_B 2ALY_B 2IY5_B 2AMC_B 3PCO_D 2CXI_C 1JJC_B 1EIY_B ....

>PRK00629 pheT phenylalanyl-tRNA synthetase subunit beta; Reviewed

Probab=96.67  E-value=0.0013  Score=69.30  Aligned_cols=75  Identities=23%  Similarity=0.263  Sum_probs=61.8

Q ss_pred             ccccceeeEEEEecccCHHHHHHHHHHHHHHHHHhhcccce-------------eEEeeccCCCCCCCeeeeccCCCCce
Q psy14335        187 QIRPHAVAAVLRNITLNEERYASFIELQDKLHQNICRKRTL-------------VAIGTHDLDTIKGPFIYDAKPPSEIR  253 (273)
Q Consensus       187 ~IRPyiv~pVLr~v~l~~~~lk~fI~~QeKLH~~igrkR~~-------------~aIGtHDldki~~P~~Y~a~~p~~i~  253 (273)
                      ...|+..+.+++||++.   ..+-+.+|++||+.-.|....             ++||.||+|+|++|++++...+.+ +
T Consensus       210 ~~c~~y~~~~i~~v~~~---~~sp~wlq~rL~~~g~~~in~ivDi~Nyv~l~~G~pi~ayD~dki~~~i~vr~~~~~e-~  285 (791)
T PRK00629        210 DLCPRYAGRVIKGVKNI---APSPLWLQERLRAAGIRPINNVVDITNYVMLELGQPLHAFDLDKIGGGIVVRRAKEGE-K  285 (791)
T ss_pred             CCCccEEEEEEECCCCC---CCCHHHHHHHHHhCCCCCcCHHHHHHHHHHHHhCCCceeeeHHHcCCceEEEECCCCC-E
Confidence            47899999999999964   367799999999995555443             699999999999999999988766 9


Q ss_pred             eeeCCCCCccCHH
Q psy14335        254 FQPLNQTKEYTGT  266 (273)
Q Consensus       254 f~PL~~~~e~t~~  266 (273)
                      |+||+. +++++.
T Consensus       286 ~~~l~~-~~~~l~  297 (791)
T PRK00629        286 LTTLDG-KERTLD  297 (791)
T ss_pred             EEecCC-ceecCC
Confidence            999995 466553

>CHL00192 syfB phenylalanyl-tRNA synthetase beta chain; Provisional

Probab=96.46  E-value=0.0025  Score=66.59  Aligned_cols=129  Identities=22%  Similarity=0.269  Sum_probs=84.6

Q ss_pred             hcCC-CChHHHHHHhhhhCccccccchhhhhhhhhccCCCCCCCCCceEEEEecCCCCcccchhhhhhhhh------c-c
Q psy14335         25 VAGH-GTDEEFASLCFAFGLELDEVTSEKQIISKEQGADNSKGASEDVIYRIDVPANRYDLLCLEGLYNGL------M-T   96 (273)
Q Consensus        25 lG~~-~~~ee~~~llf~~g~Eld~~~~e~~~~~~~~~~~~~~~~~~~~~~kiEi~~nRpDLls~eGlaraL------~-v   96 (273)
                      +-.+ .+.+.+.+.|.+.|+.++.+.++.            -++.++.++.|+++|||||.||+.||||-|      . .
T Consensus        12 ~~~~~~~~~~~~~~~~~~g~~~~~~~~~~------------~~~~~D~iiei~iTpNR~D~lS~~GiARElaA~~~~~~~   79 (704)
T CHL00192         12 INLENIDLDTLINKLTLAGFEVEDILSVK------------IGGESDIILDISSTANRSDVLSIQGLSREISALFNSDPI   79 (704)
T ss_pred             cCcccCCHHHHHhhccCCCccccceeeec------------cCCCCCEEEEEeCCCChHHHHHhHHHHHHHHHHhCCCcc
Confidence            4545 678999999999999999876441            123456789999999999999999999966      2 1


Q ss_pred             C------------------------CCCceeEEEEEecCcCCHHHHHHHHHHHHHHHHHhhhc-cce------------e
Q psy14335         97 S------------------------QIRPHAVAAVLRNITLNEERYASFIELQDKLHQNICRK-RTL------------V  139 (273)
Q Consensus        97 ~------------------------~iRPyi~~avvr~v~l~~~~lk~~I~~QeKLH~~igrk-R~~------------v  139 (273)
                      +                        ...|...|.+++||+..+ +   =.-+|.+|...=-|- -..            -
T Consensus        80 ~~p~~~~~~~~~~~~~~v~i~~~~~~~c~~y~~~~i~~v~v~~-S---P~Wl~~rL~~~Gir~iNniVDiTNyVmle~Gq  155 (704)
T CHL00192         80 KLKYYNPSISWFDKLKNLISNDSSKLNCSMFIAVIIENIEIKD-S---PKWLQNRLSSSGFKSLNNLTDIQNYIMLETGQ  155 (704)
T ss_pred             cCCCcccCccccCCceeEEEecCCccCCCcEEEEEEeCCCCCC-C---hHHHHHHHHHcCCcCccHHHHHHHHHHHHhCC
Confidence            0                        134556677888888742 1   124566665431111 011            1


Q ss_pred             eeeeecCCCCCC-----Ce--EEeecCCCCceeeeCCC
Q psy14335        140 AIGTHDLDTIKG-----PF--IYDAKPPSEIRFQPLNQ  170 (273)
Q Consensus       140 aIGtHDld~i~~-----P~--~Y~a~~p~~i~fvPL~~  170 (273)
                      .+=.+|+|+|++     .+  +=+...+.+ +|+-|+.
T Consensus       156 PlHafD~dki~g~~~~~~i~~~Vr~a~~ge-~~~~Ld~  192 (704)
T CHL00192        156 PIEIYDLDKIYSKNTTSSLALSSKFALQKS-SFIASNS  192 (704)
T ss_pred             CchhhhHHhhcCCCccCcceeEEEEcCCCC-EEEeeCC
Confidence            233579999986     35  555555555 6766664

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	273
3l4g_B	589	Crystal Structure Of Homo Sapiens Cytoplasmic Pheny		2e-59
2cxi_A	348	Crystal Structure Of An N-Terminal Fragment Of The		4e-08
2cxi_A	348	Crystal Structure Of An N-Terminal Fragment Of The		4e-08

>pdb|3L4G|B Chain B, Crystal Structure Of Homo Sapiens Cytoplasmic Phenylalanyl-T Synthetase Length = 589

Iteration: 1
 Score =  225 bits (574), Expect = 2e-59,   Method: Compositional matrix adjust.
 Identities = 113/190 (59%), Positives = 133/190 (70%), Gaps = 28/190 (14%)
Query: 30  TDEEFASLCFAFGLELDEVTSEKQIISKEQGADNSKGASEDVIYRIDVPANRYDLLCLEG 89
           TDEEF  LCF FGLELDE+TSEK+IISKEQG   + GAS+ V+Y+IDVPANRYDLLCLEG
Sbjct: 20  TDEEFDELCFEFGLELDEITSEKEIISKEQGNVKAAGASDVVLYKIDVPANRYDLLCLEG 79
Query: 90  LYNGLM----------------------------TSQIRPHAVAAVLRNITLNEERYASF 121
           L  GL                             T++IRP AVAAVLRNI   ++RY SF
Sbjct: 80  LVRGLQVFKERIKAPVYKRVMPDGKIQKLIITEETAKIRPFAVAAVLRNIKFTKDRYDSF 139
Query: 122 IELQDKLHQNICRKRTLVAIGTHDLDTIKGPFIYDAKPPSEIRFQPLNQTKEYSGTEIMD 181
           IELQ+KLHQNICRKR LVAIGTHDLDT+ GPF Y AK PS+I+F+PLN+TKEY+  E+M+
Sbjct: 140 IELQEKLHQNICRKRALVAIGTHDLDTLSGPFTYTAKRPSDIKFKPLNKTKEYTACELMN 199
Query: 182 LYATSQIRPH 191
           +Y T     H
Sbjct: 200 IYKTDNHLKH 209

>pdb|2CXI|A Chain A, Crystal Structure Of An N-Terminal Fragment Of The Phenylalanyl-Trna Synthetase Beta-Subunit From Pyrococcus Horikoshii Length = 348

Iteration: 1
 Score = 55.1 bits (131), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 28/71 (39%), Positives = 41/71 (57%), Gaps = 1/71 (1%)
Query: 99  IRPHAVAAVLRNITLNEERYASFIELQDKLHQNICRKRTLVAIGTHDLDTIKGPFIYDAK 158
           IRP+ V A++  + L+E+  +  I+LQ+K+     R+R  VAIG  D D IK P  Y A 
Sbjct: 100 IRPYGVYAIVEGLRLDEDSLSQXIQLQEKIALTFGRRRREVAIGIFDFDKIKPPIYYKAA 159
Query: 159 PPSEIRFQPLN 169
             +E +F PL 
Sbjct: 160 EKTE-KFAPLG 169

>pdb|2CXI|A Chain A, Crystal Structure Of An N-Terminal Fragment Of The Phenylalanyl-Trna Synthetase Beta-Subunit From Pyrococcus Horikoshii Length = 348

Iteration: 1
 Score = 55.1 bits (131), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 28/71 (39%), Positives = 41/71 (57%), Gaps = 1/71 (1%)
Query: 188 IRPHAVAAVLRNITLNEERYASFIELQDKLHQNICRKRTLVAIGTHDLDTIKGPFIYDAK 247
           IRP+ V A++  + L+E+  +  I+LQ+K+     R+R  VAIG  D D IK P  Y A 
Sbjct: 100 IRPYGVYAIVEGLRLDEDSLSQXIQLQEKIALTFGRRRREVAIGIFDFDKIKPPIYYKAA 159
Query: 248 PPSEIRFQPLN 258
             +E +F PL 
Sbjct: 160 EKTE-KFAPLG 169

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	273
3l4g_B	589	Phenylalanyl-tRNA synthetase beta chain; aminoacyl	1e-49
2cxi_A	348	Phenylalanyl-tRNA synthetase beta chain; aminoacyl	2e-35
2cxi_A	348	Phenylalanyl-tRNA synthetase beta chain; aminoacyl	3e-26
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	4e-07

>3l4g_B Phenylalanyl-tRNA synthetase beta chain; aminoacylation, tRNA-binding, DNA-binding domain, four-helix acetylation, aminoacyl-tRNA synthetase; HET: PHE; 3.30A {Homo sapiens} Length = 589

 Score =  171 bits (435), Expect = 1e-49
 Identities = 111/195 (56%), Positives = 135/195 (69%), Gaps = 28/195 (14%)

Query: 30  TDEEFASLCFAFGLELDEVTSEKQIISKEQGADNSKGASEDVIYRIDVPANRYDLLCLEG 89
           TDEEF  LCF FGLELDE+TSEK+IISKEQG   + GAS+ V+Y+IDVPANRYDLLCLEG
Sbjct: 20  TDEEFDELCFEFGLELDEITSEKEIISKEQGNVKAAGASDVVLYKIDVPANRYDLLCLEG 79

Query: 90  L------YNGLM----------------------TSQIRPHAVAAVLRNITLNEERYASF 121
           L      +   +                      T++IRP AVAAVLRNI   ++RY SF
Sbjct: 80  LVRGLQVFKERIKAPVYKRVMPDGKIQKLIITEETAKIRPFAVAAVLRNIKFTKDRYDSF 139

Query: 122 IELQDKLHQNICRKRTLVAIGTHDLDTIKGPFIYDAKPPSEIRFQPLNQTKEYSGTEIMD 181
           IELQ+KLHQNICRKR LVAIGTHDLDT+ GPF Y AK PS+I+F+PLN+TKEY+  E+M+
Sbjct: 140 IELQEKLHQNICRKRALVAIGTHDLDTLSGPFTYTAKRPSDIKFKPLNKTKEYTACELMN 199

Query: 182 LYATSQIRPHAVAAV 196
           +Y T     H +  +
Sbjct: 200 IYKTDNHLKHYLHII 214

>2cxi_A Phenylalanyl-tRNA synthetase beta chain; aminoacyl-tRNA synthetase, ligase, structural genomics; HET: MSE; 1.94A {Pyrococcus horikoshii} Length = 348

 Score =  128 bits (324), Expect = 2e-35
 Identities = 48/181 (26%), Positives = 75/181 (41%), Gaps = 44/181 (24%)

Query: 30  TDEEFASLCFAFGLELDEVTSEKQIISKEQGADNSKGASEDVIYRIDVP-ANRYDLLCLE 88
           + EE+  L      ELD+V  E                +  V +++D    NR DL   E
Sbjct: 20  SIEEWEDLVLYAKCELDDVWEE----------------NGKVYFKLDSKDTNRPDLWSAE 63

Query: 89  GL------YNGL--------------------MTSQIRPHAVAAVLRNITLNEERYASFI 122
           G+        G+                        IRP+ V A++  + L+E+  +  I
Sbjct: 64  GVARQIKWALGIEKGLPKYEVKKSNVTVYVDEKLKDIRPYGVYAIVEGLRLDEDSLSQMI 123

Query: 123 ELQDKLHQNICRKRTLVAIGTHDLDTIKGPFIYDAKPPSEIRFQPLNQTKEYSGTEIMDL 182
           +LQ+K+     R+R  VAIG  D D IK P  Y A   +E +F PL   +E +  EI++ 
Sbjct: 124 QLQEKIALTFGRRRREVAIGIFDFDKIKPPIYYKAAEKTE-KFAPLGYKEEMTLEEILEK 182

Query: 183 Y 183
           +
Sbjct: 183 H 183

>2cxi_A Phenylalanyl-tRNA synthetase beta chain; aminoacyl-tRNA synthetase, ligase, structural genomics; HET: MSE; 1.94A {Pyrococcus horikoshii} Length = 348

 Score =  104 bits (260), Expect = 3e-26
 Identities = 32/88 (36%), Positives = 49/88 (55%), Gaps = 1/88 (1%)

Query: 185 TSQIRPHAVAAVLRNITLNEERYASFIELQDKLHQNICRKRTLVAIGTHDLDTIKGPFIY 244
              IRP+ V A++  + L+E+  +  I+LQ+K+     R+R  VAIG  D D IK P  Y
Sbjct: 97  LKDIRPYGVYAIVEGLRLDEDSLSQMIQLQEKIALTFGRRRREVAIGIFDFDKIKPPIYY 156

Query: 245 DAKPPSEIRFQPLNQTKEYTGTEIMDLY 272
            A   +E +F PL   +E T  EI++ +
Sbjct: 157 KAAEKTE-KFAPLGYKEEMTLEEILEKH 183

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 50.2 bits (119), Expect = 4e-07
 Identities = 46/299 (15%), Positives = 85/299 (28%), Gaps = 83/299 (27%)

Query: 40  AFGLELD--EVT-SEKQIISKEQGADNSKGASEDV--IYRI-----DVPANRYDLLCLEG 89
           AF    D  +V    K I+SKE+  D+   + + V    R+                 E 
Sbjct: 28  AFVDNFDCKDVQDMPKSILSKEE-IDHIIMSKDAVSGTLRLFWTLLSKQEEMVQKFVEEV 86

Query: 90  L---YNGLMTSQIRPHAVAAVLRNITLNEERYAS----------------------FIEL 124
           L   Y  LM+       +    R  ++    Y                        +++L
Sbjct: 87  LRINYKFLMS------PIKTEQRQPSMMTRMYIEQRDRLYNDNQVFAKYNVSRLQPYLKL 140

Query: 125 QDKL-----HQNI-------CRKRTLVAIGTHDLDTIKG-PF-IY------DAKPPSEI- 163
           +  L      +N+         K  +               F I+         P + + 
Sbjct: 141 RQALLELRPAKNVLIDGVLGSGKTWVALDVCLSYKVQCKMDFKIFWLNLKNCNSPETVLE 200

Query: 164 RFQPLNQTKEYSGTEIMDLYATSQIRPHAVAAVLRNITLNEERYA-SFIELQDKLHQNI- 221
             Q L    + + T   D  +  ++R H++ A LR + L  + Y    + L +  +    
Sbjct: 201 MLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRL-LKSKPYENCLLVLLNVQNAKAW 259

Query: 222 ------CRKRTLVAIGTHDLDTIKGPFIYDAKPPSEIRFQPLNQTKE-YTGTEIMDLYA 273
                 C  + L+   T          + D    +      L+      T  E+  L  
Sbjct: 260 NAFNLSC--KILLT--TRFKQ------VTDFLSAATTTHISLDHHSMTLTPDEVKSLLL 308

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	273
3l4g_B	589	Phenylalanyl-tRNA synthetase beta chain; aminoacyl	100.0
2cxi_A	348	Phenylalanyl-tRNA synthetase beta chain; aminoacyl	100.0
2cxi_A	348	Phenylalanyl-tRNA synthetase beta chain; aminoacyl	99.7
3l4g_B	589	Phenylalanyl-tRNA synthetase beta chain; aminoacyl	99.67
3pco_B	795	Phenylalanyl-tRNA synthetase, beta chain; aminoacy	99.41
2rhq_B	795	Phenylalanyl-tRNA synthetase beta chain; heterotet	99.39
1b7y_B	785	Phers, protein (phenylalanyl-tRNA synthetase); enz	99.17
1b7y_B	785	Phers, protein (phenylalanyl-tRNA synthetase); enz	97.4
3pco_B	795	Phenylalanyl-tRNA synthetase, beta chain; aminoacy	97.35
2rhq_B	795	Phenylalanyl-tRNA synthetase beta chain; heterotet	97.34
3hj7_A	142	TRNA(Ile)-lysidine synthase; helix-turn-helix, pse	87.25

>3l4g_B Phenylalanyl-tRNA synthetase beta chain; aminoacylation, tRNA-binding, DNA-binding domain, four-helix acetylation, aminoacyl-tRNA synthetase; HET: PHE; 3.30A {Homo sapiens}

Probab=100.00  E-value=5.8e-41  Score=335.19  Aligned_cols=185  Identities=62%  Similarity=1.017  Sum_probs=169.5

Q ss_pred             ccchhhHHhhhhhHHHhcCCCChHHHHHHhhhhCccccccchhhhhhhhhccCCCCCCCCCceEEEEecCCCCcccchhh
Q psy14335          9 DLRLSDLLRTLVLPSTVAGHGTDEEFASLCFAFGLELDEVTSEKQIISKEQGADNSKGASEDVIYRIDVPANRYDLLCLE   88 (273)
Q Consensus         9 ~~~~~~l~~~~~l~~~lG~~~~~ee~~~llf~~g~Eld~~~~e~~~~~~~~~~~~~~~~~~~~~~kiEi~~nRpDLls~e   88 (273)
                      .++++||.++      +|++||++||+++||+||+|+|++++|+++..++||.+++.+.+++.+++||++|||||+||++
T Consensus         5 ~v~~~~l~~~------~g~~~~~~e~~~~~~~~g~e~d~~~~~~~~~~~~~~~~~~~~~~~d~i~ei~itpNR~D~ls~~   78 (589)
T 3l4g_B            5 SVKRDLLFQA------LGRTYTDEEFDELCFEFGLELDEITSEKEIISKEQGNVKAAGASDVVLYKIDVPANRYDLLCLE   78 (589)
T ss_dssp             EEEHHHHHHH------HTSCCCTTHHHHHHHHTTCEEEEEEEHHHHHTTTSSCCCCCSSSSSEEEEEECCTTCSTTSSHH
T ss_pred             EECHHHHHHH------HCCCCCHHHHHHHHHhcCCccccccccchhhhhcccccccccCCCCeEEEEecCCChhHHhHHH
Confidence            5678888888      9999999999999999999999999999999999999998888899999999999999999999


Q ss_pred             hhhhhh----------------------------ccCCCCceeEEEEEecCcCCHHHHHHHHHHHHHHHHHhhhccceee
Q psy14335         89 GLYNGL----------------------------MTSQIRPHAVAAVLRNITLNEERYASFIELQDKLHQNICRKRTLVA  140 (273)
Q Consensus        89 GlaraL----------------------------~v~~iRPyi~~avvr~v~l~~~~lk~~I~~QeKLH~~igrkR~~va  140 (273)
                      ||||.+                            +..+.|||.+|+|+|||++++++++|++.+|+|||+++||+|++|+
T Consensus        79 GiARela~~~~~~~~p~~~~~~~~~~~~~i~v~~~~~~~cp~y~~~vi~~V~~~~~~~~Sp~wlq~rL~~~~~r~~~~Vd  158 (589)
T 3l4g_B           79 GLVRGLQVFKERIKAPVYKRVMPDGKIQKLIITEETAKIRPFAVAAVLRNIKFTKDRYDSFIELQEKLHQNICRKRALVA  158 (589)
T ss_dssp             HHHHHHHHHTTSSCCCCCEEECCSSCCCEEEECTTTTTTSCEEEEEEECCBCCCHHHHHHHHHHHHHTTTTTTTTTTSEE
T ss_pred             HHHHHHHHhcCCCCCCCccccCCCCCceeEEEeecCcccCCeEEEEEEECcCcCccccCCHHHHHHHHHHccCCCceEEe
Confidence            999988                            1246899999999999999999999999999999999999999999


Q ss_pred             eeeecCCCCCCCeEEeecCCCCceeeeCCCCCcccHHHHHHhhcc-cccccc-------eeeEEEEe
Q psy14335        141 IGTHDLDTIKGPFIYDAKPPSEIRFQPLNQTKEYSGTEIMDLYAT-SQIRPH-------AVAAVLRN  199 (273)
Q Consensus       141 IGtHDld~i~~P~~Y~a~~p~~i~fvPL~~~~e~t~~elLe~~ek-~~IRPy-------iv~pVLr~  199 (273)
                      |||||+|+|++|++|++.+|++++|+||+++++||+.++|+.|.+ .++++|       ..+||+.|
T Consensus       159 Itn~Dldki~g~~~~~~~~~~~~~f~~Ld~~~~l~~~~l~~~~~~~~~~~~y~~ii~~~~~~~vI~D  225 (589)
T 3l4g_B          159 IGTHDLDTLSGPFTYTAKRPSDIKFKPLNKTKEYTACELMNIYKTDNHLKHYLHIIENKPLYPVIYD  225 (589)
T ss_dssp             EEEEEGGGCCSCEEEEEECSTTCEECBTTCSSCEEHHHHHHHSTTCTTTTTTTTTTCCSSCEEEEEC
T ss_pred             hhhhhHHHcCCCeEEEEeCCCCcEEEECCCceEecHHHhhhhhcccccccccceecccCCCcEEEEE
Confidence            999999999999999999999999999999999999999998876 554443       56677654

>2cxi_A Phenylalanyl-tRNA synthetase beta chain; aminoacyl-tRNA synthetase, ligase, structural genomics; HET: MSE; 1.94A {Pyrococcus horikoshii}

Probab=100.00  E-value=4.7e-35  Score=276.80  Aligned_cols=150  Identities=33%  Similarity=0.474  Sum_probs=140.1

Q ss_pred             ccchhhHHhhhhhHHHhcCCCChHHHHHHhhhhCccccccchhhhhhhhhccCCCCCCCCCceEEEEecC-----CCCcc
Q psy14335          9 DLRLSDLLRTLVLPSTVAGHGTDEEFASLCFAFGLELDEVTSEKQIISKEQGADNSKGASEDVIYRIDVP-----ANRYD   83 (273)
Q Consensus         9 ~~~~~~l~~~~~l~~~lG~~~~~ee~~~llf~~g~Eld~~~~e~~~~~~~~~~~~~~~~~~~~~~kiEi~-----~nRpD   83 (273)
                      .+++++|.++      +|++||++||++.||++|.|+++..++                    +++||++     |||||
T Consensus         5 ~v~~~~L~~~------lg~~~~~~el~~~~~~~G~~~~~~~d~--------------------iiei~it~~~~~pNR~D   58 (348)
T 2cxi_A            5 DVSKSDLERL------IGRSFSIEEWEDLVLYAKCELDDVWEE--------------------NGKVYFKLDSKDTNRPD   58 (348)
T ss_dssp             EEEHHHHHHH------HTSCCCHHHHHHHHHHTTEEEEEEEEE--------------------TTEEEEEEEECCTTCGG
T ss_pred             EECHHHHHHH------HCCCCCHHHHHhhhhhccCCHHHcCce--------------------EEEEEccCCCCCCChHH
Confidence            5678888888      999999999999999999999987622                    5999999     99999


Q ss_pred             cchhhhhhhhh--------------------------ccCCCCceeEEEEEecCcCCHHHHHHHHHHHHHHHHHhhhccc
Q psy14335         84 LLCLEGLYNGL--------------------------MTSQIRPHAVAAVLRNITLNEERYASFIELQDKLHQNICRKRT  137 (273)
Q Consensus        84 Lls~eGlaraL--------------------------~v~~iRPyi~~avvr~v~l~~~~lk~~I~~QeKLH~~igrkR~  137 (273)
                      +||++||||.|                          .+.+.|||.+|+++|||++++++|+|++.+|+|||+++||+|+
T Consensus        59 ~lS~~GiARelaa~~~~~~~~p~~~~~~~~~~v~v~~~~~~~~p~~~~~vi~~v~~~~~~~~sp~wlq~rL~~~~G~~r~  138 (348)
T 2cxi_A           59 LWSAEGVARQIKWALGIEKGLPKYEVKKSNVTVYVDEKLKDIRPYGVYAIVEGLRLDEDSLSQMIQLQEKIALTFGRRRR  138 (348)
T ss_dssp             GSSHHHHHHHHHHHTTSSCSSCCCCEEEEEEEEEECGGGTTTSCEEEEEEEESCCCCHHHHHHHHHHHHHHHHTTTTTTT
T ss_pred             HhHHHHHHHHHHHHhCCCCCCCCccccccceEEEECCCccccCCeEEEEEEECcccCcCCCCCHHHHHHHHHHHhCCccc
Confidence            99999999998                          1227899999999999999999999999999999999999999


Q ss_pred             eeeeeeecCCCCCCCeEEeecCCCCceeeeCCCCCcccHHHHHHhhcc
Q psy14335        138 LVAIGTHDLDTIKGPFIYDAKPPSEIRFQPLNQTKEYSGTEIMDLYAT  185 (273)
Q Consensus       138 ~vaIGtHDld~i~~P~~Y~a~~p~~i~fvPL~~~~e~t~~elLe~~ek  185 (273)
                      +|+||+||+|+|++||+|++..|.+ +|+||+..++++..|+|+.|++
T Consensus       139 ~Vpi~a~Dldki~g~i~vr~a~~ge-~f~~L~~~~~l~~~e~~~~~~~  185 (348)
T 2cxi_A          139 EVAIGIFDFDKIKPPIYYKAAEKTE-KFAPLGYKEEMTLEEILEKHEK  185 (348)
T ss_dssp             SEEEEEEEGGGSCSSEEEEEECTTC-EECBTTCSSCEEHHHHHHHSHH
T ss_pred             CCcccccCHHHCCCCeEEEEcCCCC-EEEECCCccccCHHHhhhhhcc
Confidence            9999999999999999999999999 9999999889999999999986

>2cxi_A Phenylalanyl-tRNA synthetase beta chain; aminoacyl-tRNA synthetase, ligase, structural genomics; HET: MSE; 1.94A {Pyrococcus horikoshii}

Probab=99.70  E-value=1.7e-17  Score=156.83  Aligned_cols=86  Identities=37%  Similarity=0.606  Sum_probs=83.0

Q ss_pred             cccccceeeEEEEecccCHHHHHHHHHHHHHHHHHhhcccceeEEeeccCCCCCCCeeeeccCCCCceeeeCCCCCccCH
Q psy14335        186 SQIRPHAVAAVLRNITLNEERYASFIELQDKLHQNICRKRTLVAIGTHDLDTIKGPFIYDAKPPSEIRFQPLNQTKEYTG  265 (273)
Q Consensus       186 ~~IRPyiv~pVLr~v~l~~~~lk~fI~~QeKLH~~igrkR~~~aIGtHDldki~~P~~Y~a~~p~~i~f~PL~~~~e~t~  265 (273)
                      ..++||.++.+++||++++++|++++.+|+|||+++||+|++|+||+||+|+|++||+|++.+|.+ +|+||+..++++.
T Consensus        98 ~~~~p~~~~~vi~~v~~~~~~~~sp~wlq~rL~~~~G~~r~~Vpi~a~Dldki~g~i~vr~a~~ge-~f~~L~~~~~l~~  176 (348)
T 2cxi_A           98 KDIRPYGVYAIVEGLRLDEDSLSQMIQLQEKIALTFGRRRREVAIGIFDFDKIKPPIYYKAAEKTE-KFAPLGYKEEMTL  176 (348)
T ss_dssp             TTTSCEEEEEEEESCCCCHHHHHHHHHHHHHHHHTTTTTTTSEEEEEEEGGGSCSSEEEEEECTTC-EECBTTCSSCEEH
T ss_pred             cccCCeEEEEEEECcccCcCCCCCHHHHHHHHHHHhCCcccCCcccccCHHHCCCCeEEEEcCCCC-EEEECCCccccCH
Confidence            478999999999999999999999999999999999999999999999999999999999999999 9999999889999


Q ss_pred             HHHhhhc
Q psy14335        266 TEIMDLY  272 (273)
Q Consensus       266 ~eil~~~  272 (273)
                      .|+++.|
T Consensus       177 ~e~~~~~  183 (348)
T 2cxi_A          177 EEILEKH  183 (348)
T ss_dssp             HHHHHHS
T ss_pred             HHhhhhh
Confidence            9999876

>3l4g_B Phenylalanyl-tRNA synthetase beta chain; aminoacylation, tRNA-binding, DNA-binding domain, four-helix acetylation, aminoacyl-tRNA synthetase; HET: PHE; 3.30A {Homo sapiens}

Probab=99.67  E-value=3.7e-17  Score=163.43  Aligned_cols=87  Identities=71%  Similarity=1.190  Sum_probs=84.2

Q ss_pred             cccccceeeEEEEecccCHHHHHHHHHHHHHHHHHhhcccceeEEeeccCCCCCCCeeeeccCCCCceeeeCCCCCccCH
Q psy14335        186 SQIRPHAVAAVLRNITLNEERYASFIELQDKLHQNICRKRTLVAIGTHDLDTIKGPFIYDAKPPSEIRFQPLNQTKEYTG  265 (273)
Q Consensus       186 ~~IRPyiv~pVLr~v~l~~~~lk~fI~~QeKLH~~igrkR~~~aIGtHDldki~~P~~Y~a~~p~~i~f~PL~~~~e~t~  265 (273)
                      ..++||.++.|++||++++++++|++.||+|||++.||+|++|+||+||+|+|++|++|.+.+|++++|+||+.+++||+
T Consensus       115 ~~~cp~y~~~vi~~V~~~~~~~~Sp~wlq~rL~~~~~r~~~~VdItn~Dldki~g~~~~~~~~~~~~~f~~Ld~~~~l~~  194 (589)
T 3l4g_B          115 AKIRPFAVAAVLRNIKFTKDRYDSFIELQEKLHQNICRKRALVAIGTHDLDTLSGPFTYTAKRPSDIKFKPLNKTKEYTA  194 (589)
T ss_dssp             TTTSCEEEEEEECCBCCCHHHHHHHHHHHHHTTTTTTTTTTSEEEEEEEGGGCCSCEEEEEECSTTCEECBTTCSSCEEH
T ss_pred             cccCCeEEEEEEECcCcCccccCCHHHHHHHHHHccCCCceEEehhhhhHHHcCCCeEEEEeCCCCcEEEECCCceEecH
Confidence            57999999999999999999999999999999999999999999999999999999999999999999999999889999


Q ss_pred             HHHhhhc
Q psy14335        266 TEIMDLY  272 (273)
Q Consensus       266 ~eil~~~  272 (273)
                      .+++++|
T Consensus       195 ~~l~~~~  201 (589)
T 3l4g_B          195 CELMNIY  201 (589)
T ss_dssp             HHHHHHS
T ss_pred             HHhhhhh
Confidence            9998876

>3pco_B Phenylalanyl-tRNA synthetase, beta chain; aminoacylation, tRNA-binding, DNA-binding domain, four-helix aminoacyl-tRNA synthetase, ATP-binding; HET: PHE AMP; 3.02A {Escherichia coli}

Probab=99.41  E-value=1.7e-13  Score=141.51  Aligned_cols=98  Identities=22%  Similarity=0.300  Sum_probs=88.3

Q ss_pred             ceEEEEecCCCCcccchhhhhhhhh----------------------------ccCCCCceeEEEEEecCcCCHHHHHHH
Q psy14335         70 DVIYRIDVPANRYDLLCLEGLYNGL----------------------------MTSQIRPHAVAAVLRNITLNEERYASF  121 (273)
Q Consensus        70 ~~~~kiEi~~nRpDLls~eGlaraL----------------------------~v~~iRPyi~~avvr~v~l~~~~lk~~  121 (273)
                      +.++.|+++|||||.||++||||.|                            +..+.+|+.+|+++|||+++..+   .
T Consensus       155 D~viei~iTpNR~D~lS~~GiARElaa~~~~~~~~p~~~~~~~~~~~~~~v~v~~~~~cp~y~~~vi~~V~~~~~S---P  231 (795)
T 3pco_B          155 DNTIEISVTPNRADCLGIIGVARDVAVLNQLPLVQPEIVPVGATIDDTLPITVEAPEACPRYLGRVVKGINVKAPT---P  231 (795)
T ss_dssp             CEEEEEECCTTCCSCSSHHHHHHHHHHHHTCCCCCCCCCCCCCCSCCCCCCCCSCTTTCSEEEEEEEESCCTTCCC---C
T ss_pred             ceeEEeecCCCcHHHhHHHHHHHHHHHHhCCCCCCCcccccccCCCcceEEEecCcccCceEEEEEEEcccCCCCC---H
Confidence            4689999999999999999999988                            12346999999999999997643   5


Q ss_pred             HHHHHHHHHHhhhcccee-------------eeeeecCCCCCCCeEEeecCCCCceeeeCCCC
Q psy14335        122 IELQDKLHQNICRKRTLV-------------AIGTHDLDTIKGPFIYDAKPPSEIRFQPLNQT  171 (273)
Q Consensus       122 I~~QeKLH~~igrkR~~v-------------aIGtHDld~i~~P~~Y~a~~p~~i~fvPL~~~  171 (273)
                      +.+|+|||++-+|.+..+             .||.||+|+|++|++|+...+.+ +|+||+..
T Consensus       232 ~wlq~rL~~~g~r~in~vVDitNyv~le~GqPlhafD~dki~g~i~vr~a~~ge-~~~~Ld~~  293 (795)
T 3pco_B          232 LWMKEKLRRCGIRSIDAVVDVTNYVLLELGQPMHAFDKDRIEGGIVVRMAKEGE-TLVLLDGT  293 (795)
T ss_dssp             THHHHHHHHTTCCCCCSHHHHHHHHHHHHSCCEEEEEGGGCCSCCEEECCCSSC-CEEETTTE
T ss_pred             HHHHHHHHHcCCCCccHHHHHHHHHHHHhCCCCccccHhHCCCCeEEEEcCCCC-EEEecCCc
Confidence            889999999999999988             99999999999999999999988 99999985

>2rhq_B Phenylalanyl-tRNA synthetase beta chain; heterotetramer, phenylalanine, aminoacyl-tRNA synthetase, ATP-binding, cytoplasm, ligase; HET: GAX; 2.20A {Staphylococcus haemolyticus} PDB: 2rhs_B*

Probab=99.39  E-value=2.4e-13  Score=140.30  Aligned_cols=104  Identities=22%  Similarity=0.291  Sum_probs=88.2

Q ss_pred             ceEEEEecCCCCcccchhhhhhhhh-------------c-----------------cCCCCceeEEEEEecCcCCHHHHH
Q psy14335         70 DVIYRIDVPANRYDLLCLEGLYNGL-------------M-----------------TSQIRPHAVAAVLRNITLNEERYA  119 (273)
Q Consensus        70 ~~~~kiEi~~nRpDLls~eGlaraL-------------~-----------------v~~iRPyi~~avvr~v~l~~~~lk  119 (273)
                      +.+++|+++|||||.||++||||.|             .                 ....||+.+|+++|||++.    .
T Consensus       157 D~viei~iTpNR~D~lS~~GiARelaa~~~~~~~~p~~~~~~~~~~~~~~~~v~v~~~~~cp~y~~~~i~~v~~~----~  232 (795)
T 2rhq_B          157 DQVMEFDLTPNRADALSMVGTAYEVAALYQTEMTKPETQSNETSESATNELSVTIDNPEKVPYYSARVVKNVSIE----P  232 (795)
T ss_dssp             CEEEEEECCGGGGGGSSHHHHHHHHHHHHTCCBCCCCCCCCCCSCBGGGTCEEEESCTTTCSEEEEEEEECCCCC----C
T ss_pred             ceEEEEeCCCChHHHhHHHHHHHHHHHHhCCCCCCCCccccccccCCCCceEEEecCcccCceEEEEEEECCCCC----C
Confidence            4689999999999999999999988             1                 1246899999999999994    4


Q ss_pred             HHHHHHHHHHHHhhhcccee-------------eeeeecCCCCC-CCeEEeecCCCCceeeeCCCC-CcccHHH
Q psy14335        120 SFIELQDKLHQNICRKRTLV-------------AIGTHDLDTIK-GPFIYDAKPPSEIRFQPLNQT-KEYSGTE  178 (273)
Q Consensus       120 ~~I~~QeKLH~~igrkR~~v-------------aIGtHDld~i~-~P~~Y~a~~p~~i~fvPL~~~-~e~t~~e  178 (273)
                      +.+.+|+|||++-+|.++.+             .||.||+|+|+ ++++|+...+.+ +|+||+.. .+++..+
T Consensus       233 sp~~l~~rL~~~g~r~in~vVDitNyv~le~G~Plha~D~dki~~g~i~vr~a~~ge-~~~~L~~~~~~l~~~~  305 (795)
T 2rhq_B          233 SPIWVQARLIKAGIRPINNVVDISNYVLLEYGQPLHMFDQDHIGSKEIVVRQAKDEE-TMTTLDNNERKLVDTD  305 (795)
T ss_dssp             CCHHHHHHHHHTTCCCCCHHHHHHHHHHHHHSCCCEEEEGGGSSSSEEEEEECCTTC-EEEBTTSCEEECCTTC
T ss_pred             CHHHHHHHHHHCCCCCccHHHHHHHHHHHHhCCCcccccHhHCCCCceEEEEcCCCC-EEEecCCceeecCCCc
Confidence            67889999999966877766             88999999999 999999999888 99999974 4444333

>1b7y_B Phers, protein (phenylalanyl-tRNA synthetase); enzyme, alpha/beta homodimer, ligase; HET: FYA; 2.50A {Thermus thermophilus} SCOP: a.6.1.1 a.6.1.1 b.40.4.4 b.153.1.1 d.58.13.1 d.104.1.1 PDB: 1b70_B* 1eiy_B 1jjc_B* 1pys_B 2akw_B* 2aly_B* 2amc_B* 3hfz_B* 3teh_B* 2iy5_B*

Probab=99.17  E-value=2.1e-11  Score=125.78  Aligned_cols=106  Identities=22%  Similarity=0.261  Sum_probs=89.3

Q ss_pred             CceEEEEecCCCCcccchhhhhhhhhc---------------------------cCCCCceeEEEEEecCcCCHHHHHHH
Q psy14335         69 EDVIYRIDVPANRYDLLCLEGLYNGLM---------------------------TSQIRPHAVAAVLRNITLNEERYASF  121 (273)
Q Consensus        69 ~~~~~kiEi~~nRpDLls~eGlaraL~---------------------------v~~iRPyi~~avvr~v~l~~~~lk~~  121 (273)
                      ++.++.|+++|||+|.||+.||||-++                           ....+|+.+|+++|||++.    .+.
T Consensus       152 ~D~viei~iTpNR~D~ls~~GiARE~aa~~~~~~~p~~~~~~~~~~~~~~v~i~~~~~cp~y~~~~i~~v~~~----~Sp  227 (785)
T 1b7y_B          152 EEVVLDLEVTPNRPDALGLLGLARDLHALGYALVEPEAALKAEALPLPFALKVEDPEGAPHFTLGYAFGLRVA----PSP  227 (785)
T ss_dssp             CCEEEECCCCTTCGGGGSHHHHHHHHHHTTCCCCCCCCCCCEECCCCSSEEEESCTTTCSEEEEEEEESCCCC----CCC
T ss_pred             CceEEEecCCCChHHHhHHHHHHHHHHhcCCCCCCCCccccccccCCceEEEecCcccCceEEEEEEECCCCC----CCH
Confidence            567899999999999999999999661                           1145899999999999994    467


Q ss_pred             HHHHHHHHHHhhhcccee-------------eeeeecCCCCCCCeEEeecCCCCceeeeCCCC-CcccHHHH
Q psy14335        122 IELQDKLHQNICRKRTLV-------------AIGTHDLDTIKGPFIYDAKPPSEIRFQPLNQT-KEYSGTEI  179 (273)
Q Consensus       122 I~~QeKLH~~igrkR~~v-------------aIGtHDld~i~~P~~Y~a~~p~~i~fvPL~~~-~e~t~~el  179 (273)
                      +.+|+|||++-+|.+..+             .||.||+|+|+++++|+...+.+ +|+||+.. .+++..++
T Consensus       228 ~wl~~rL~~~g~r~in~vVDitNyv~le~G~Plha~D~dki~g~i~vr~a~~ge-~~~~Ld~~~~~l~~~~l  298 (785)
T 1b7y_B          228 LWMQRALFAAGMRPINNVVDVTNYVMLERAQPMHAFDLRFVGEGIAVRRAREGE-RLKTLDGVERTLHPEDL  298 (785)
T ss_dssp             HHHHHHHHHTTCCCCCHHHHHHHHHHHHSSCCCEEEEGGGTBTEEEEEECCTTC-EEEBTTSCEEECCTTCE
T ss_pred             HHHHHHHHHCCCCCccHHHHHHHHHHHHhCCCcccccHhHCCCCeEEEEcCCCC-EEEeCCCceeecCCCcE
Confidence            899999999966778777             89999999999999999999988 99999974 44544443

>1b7y_B Phers, protein (phenylalanyl-tRNA synthetase); enzyme, alpha/beta homodimer, ligase; HET: FYA; 2.50A {Thermus thermophilus} SCOP: a.6.1.1 a.6.1.1 b.40.4.4 b.153.1.1 d.58.13.1 d.104.1.1 PDB: 1b70_B* 1eiy_B 1jjc_B* 1pys_B 2akw_B* 2aly_B* 2amc_B* 3hfz_B* 3teh_B* 2iy5_B*

Probab=97.40  E-value=4.3e-05  Score=78.98  Aligned_cols=76  Identities=16%  Similarity=0.140  Sum_probs=64.0

Q ss_pred             cccccceeeEEEEecccCHHHHHHHHHHHHHHHHHhhccccee-------------EEeeccCCCCCCCeeeeccCCCCc
Q psy14335        186 SQIRPHAVAAVLRNITLNEERYASFIELQDKLHQNICRKRTLV-------------AIGTHDLDTIKGPFIYDAKPPSEI  252 (273)
Q Consensus       186 ~~IRPyiv~pVLr~v~l~~~~lk~fI~~QeKLH~~igrkR~~~-------------aIGtHDldki~~P~~Y~a~~p~~i  252 (273)
                      ....|+..+.+++||++.    .+.+.+|+|||+.-+|.+..+             .||.||+|+|++++.|+...+.+ 
T Consensus       207 ~~~cp~y~~~~i~~v~~~----~Sp~wl~~rL~~~g~r~in~vVDitNyv~le~G~Plha~D~dki~g~i~vr~a~~ge-  281 (785)
T 1b7y_B          207 PEGAPHFTLGYAFGLRVA----PSPLWMQRALFAAGMRPINNVVDVTNYVMLERAQPMHAFDLRFVGEGIAVRRAREGE-  281 (785)
T ss_dssp             TTTCSEEEEEEEESCCCC----CCCHHHHHHHHHTTCCCCCHHHHHHHHHHHHSSCCCEEEEGGGTBTEEEEEECCTTC-
T ss_pred             cccCceEEEEEEECCCCC----CCHHHHHHHHHHCCCCCccHHHHHHHHHHHHhCCCcccccHhHCCCCeEEEEcCCCC-
Confidence            357899999999999994    567899999999966767666             89999999999999999999988 


Q ss_pred             eeeeCCCC-CccCHH
Q psy14335        253 RFQPLNQT-KEYTGT  266 (273)
Q Consensus       253 ~f~PL~~~-~e~t~~  266 (273)
                      +|+||+.. .+++..
T Consensus       282 ~~~~Ld~~~~~l~~~  296 (785)
T 1b7y_B          282 RLKTLDGVERTLHPE  296 (785)
T ss_dssp             EEEBTTSCEEECCTT
T ss_pred             EEEeCCCceeecCCC
Confidence            99999964 444433

>3pco_B Phenylalanyl-tRNA synthetase, beta chain; aminoacylation, tRNA-binding, DNA-binding domain, four-helix aminoacyl-tRNA synthetase, ATP-binding; HET: PHE AMP; 3.02A {Escherichia coli}

Probab=97.35  E-value=7.4e-05  Score=77.34  Aligned_cols=71  Identities=20%  Similarity=0.279  Sum_probs=63.8

Q ss_pred             cccccceeeEEEEecccCHHHHHHHHHHHHHHHHHhhccccee-------------EEeeccCCCCCCCeeeeccCCCCc
Q psy14335        186 SQIRPHAVAAVLRNITLNEERYASFIELQDKLHQNICRKRTLV-------------AIGTHDLDTIKGPFIYDAKPPSEI  252 (273)
Q Consensus       186 ~~IRPyiv~pVLr~v~l~~~~lk~fI~~QeKLH~~igrkR~~~-------------aIGtHDldki~~P~~Y~a~~p~~i  252 (273)
                      ...+|+..+.+++||+++..+   .+.+|++||+.-+|.+..+             .|+.||+|+|++|++|+...+.+ 
T Consensus       210 ~~~cp~y~~~vi~~V~~~~~S---P~wlq~rL~~~g~r~in~vVDitNyv~le~GqPlhafD~dki~g~i~vr~a~~ge-  285 (795)
T 3pco_B          210 PEACPRYLGRVVKGINVKAPT---PLWMKEKLRRCGIRSIDAVVDVTNYVLLELGQPMHAFDKDRIEGGIVVRMAKEGE-  285 (795)
T ss_dssp             TTTCSEEEEEEEESCCTTCCC---CTHHHHHHHHTTCCCCCSHHHHHHHHHHHHSCCEEEEEGGGCCSCCEEECCCSSC-
T ss_pred             cccCceEEEEEEEcccCCCCC---HHHHHHHHHHcCCCCccHHHHHHHHHHHHhCCCCccccHhHCCCCeEEEEcCCCC-
Confidence            456899999999999997543   5899999999999999877             99999999999999999999988 


Q ss_pred             eeeeCCCC
Q psy14335        253 RFQPLNQT  260 (273)
Q Consensus       253 ~f~PL~~~  260 (273)
                      +|+||+..
T Consensus       286 ~~~~Ld~~  293 (795)
T 3pco_B          286 TLVLLDGT  293 (795)
T ss_dssp             CEEETTTE
T ss_pred             EEEecCCc
Confidence            99999975

>2rhq_B Phenylalanyl-tRNA synthetase beta chain; heterotetramer, phenylalanine, aminoacyl-tRNA synthetase, ATP-binding, cytoplasm, ligase; HET: GAX; 2.20A {Staphylococcus haemolyticus} PDB: 2rhs_B*

Probab=97.34  E-value=8.7e-05  Score=76.72  Aligned_cols=75  Identities=20%  Similarity=0.244  Sum_probs=63.8

Q ss_pred             cccccceeeEEEEecccCHHHHHHHHHHHHHHHHHhhccccee-------------EEeeccCCCCC-CCeeeeccCCCC
Q psy14335        186 SQIRPHAVAAVLRNITLNEERYASFIELQDKLHQNICRKRTLV-------------AIGTHDLDTIK-GPFIYDAKPPSE  251 (273)
Q Consensus       186 ~~IRPyiv~pVLr~v~l~~~~lk~fI~~QeKLH~~igrkR~~~-------------aIGtHDldki~-~P~~Y~a~~p~~  251 (273)
                      ...+|+..+.+++||++.    .+.+.+|+|||+.-+|.++.+             .||.||+|+|+ ++++|+...+.+
T Consensus       214 ~~~cp~y~~~~i~~v~~~----~sp~~l~~rL~~~g~r~in~vVDitNyv~le~G~Plha~D~dki~~g~i~vr~a~~ge  289 (795)
T 2rhq_B          214 PEKVPYYSARVVKNVSIE----PSPIWVQARLIKAGIRPINNVVDISNYVLLEYGQPLHMFDQDHIGSKEIVVRQAKDEE  289 (795)
T ss_dssp             TTTCSEEEEEEEECCCCC----CCCHHHHHHHHHTTCCCCCHHHHHHHHHHHHHSCCCEEEEGGGSSSSEEEEEECCTTC
T ss_pred             cccCceEEEEEEECCCCC----CCHHHHHHHHHHCCCCCccHHHHHHHHHHHHhCCCcccccHhHCCCCceEEEEcCCCC
Confidence            468999999999999994    467889999999955777666             88999999999 999999999888


Q ss_pred             ceeeeCCCC-CccCH
Q psy14335        252 IRFQPLNQT-KEYTG  265 (273)
Q Consensus       252 i~f~PL~~~-~e~t~  265 (273)
                       +|+||+.. .+++.
T Consensus       290 -~~~~L~~~~~~l~~  303 (795)
T 2rhq_B          290 -TMTTLDNNERKLVD  303 (795)
T ss_dssp             -EEEBTTSCEEECCT
T ss_pred             -EEEecCCceeecCC
Confidence             99999964 34443

>3hj7_A TRNA(Ile)-lysidine synthase; helix-turn-helix, pseudo-knot, ATP-binding, ligase, nucleoti binding, tRNA processing; 2.20A {Geobacillus kaustophilus}

Probab=87.25  E-value=0.45  Score=39.30  Aligned_cols=39  Identities=13%  Similarity=0.045  Sum_probs=36.3

Q ss_pred             cCCCCCCCeEEeecCCCCceeeeCCCCCcccHHHHHHhhc
Q psy14335        145 DLDTIKGPFIYDAKPPSEIRFQPLNQTKEYSGTEIMDLYA  184 (273)
Q Consensus       145 Dld~i~~P~~Y~a~~p~~i~fvPL~~~~e~t~~elLe~~e  184 (273)
                      |+|+|++|++++...+.+ +|.|+++....++++++....
T Consensus        46 D~dki~~pL~vR~r~~GD-r~~p~g~~g~KkLKklf~d~k   84 (142)
T 3hj7_A           46 DPASVSLPLRVRTRRRGD-RMVLKGTGGTKKLKEIFIEAK   84 (142)
T ss_dssp             CGGGSCSSEEEECCCTTC-EEEBSTTCCEEEHHHHHHHTT
T ss_pred             CHHHCCCCEEEEecCCCC-EEEECCCCCCccHHHHHHHcC
Confidence            999999999999999998 999999988899999998873

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	273
d1jjcb1	77	Domains B1 and B5 of PheRS-beta, PheT {Thermus the	98.63
d1jjcb2	75	Domains B1 and B5 of PheRS-beta, PheT {Thermus the	96.45

>d1jjcb1 a.6.1.1 (B:1-38,B:152-190) Domains B1 and B5 of PheRS-beta, PheT {Thermus thermophilus [TaxId: 274]}

class: All alpha proteins
fold: Putative DNA-binding domain
superfamily: Putative DNA-binding domain
family: Domains B1 and B5 of PheRS-beta, PheT
domain: Domains B1 and B5 of PheRS-beta, PheT
species: Thermus thermophilus [TaxId: 274]

Probab=98.63  E-value=1.3e-08  Score=75.31  Aligned_cols=63  Identities=29%  Similarity=0.339  Sum_probs=51.4

Q ss_pred             cchhhHHhhhhhHHHhcCCCChHHHHHHhhhhCccccccchhhhhhhhhccCCCCCCCCCceEEEEecCCCCcccchhhh
Q psy14335         10 LRLSDLLRTLVLPSTVAGHGTDEEFASLCFAFGLELDEVTSEKQIISKEQGADNSKGASEDVIYRIDVPANRYDLLCLEG   89 (273)
Q Consensus        10 ~~~~~l~~~~~l~~~lG~~~~~ee~~~llf~~g~Eld~~~~e~~~~~~~~~~~~~~~~~~~~~~kiEi~~nRpDLls~eG   89 (273)
                      ++++=|...      +..+.+.+++.+.|.+.|.|++++..                 .++.++.||+.|||+|.+|+.|
T Consensus         3 is~~WLke~------v~~~~s~~eLae~LT~~G~EVE~i~~-----------------~~d~iidieitPNR~Dcls~~G   59 (77)
T d1jjcb1           3 VPFSWLKAY------VPELESPEVLEERLAGLGFETDRIER-----------------VEEVVLDLEVTPNRPDALGLLG   59 (77)
T ss_dssp             EEHHHHTTT------STTCCCHHHHHHHHHHHTCCEEEEEE-----------------CCCEEEEECCCTTCSGGGSHHH
T ss_pred             cCHHHHHHH------cCCCCCHHHHHHHHhhcccccccccc-----------------cccceeeeeecCCcHHHhcccc
Confidence            444445555      67778999999999999999998752                 2346899999999999999999


Q ss_pred             hhhhhc
Q psy14335         90 LYNGLM   95 (273)
Q Consensus        90 laraL~   95 (273)
                      +||-|+
T Consensus        60 iarel~   65 (77)
T d1jjcb1          60 LARDLH   65 (77)
T ss_dssp             HHHHHH
T ss_pred             HHHHHH
Confidence            999773

>d1jjcb2 a.6.1.1 (B:400-474) Domains B1 and B5 of PheRS-beta, PheT {Thermus thermophilus [TaxId: 274]}

class: All alpha proteins
fold: Putative DNA-binding domain
superfamily: Putative DNA-binding domain
family: Domains B1 and B5 of PheRS-beta, PheT
domain: Domains B1 and B5 of PheRS-beta, PheT
species: Thermus thermophilus [TaxId: 274]

Probab=96.45  E-value=0.0021  Score=46.10  Aligned_cols=55  Identities=22%  Similarity=0.282  Sum_probs=45.2

Q ss_pred             ccchhhHHhhhhhHHHhcCCCChHHHHHHhhhhCccccccchhhhhhhhhccCCCCCCCCCceEEEEecCCCCcccchhh
Q psy14335          9 DLRLSDLLRTLVLPSTVAGHGTDEEFASLCFAFGLELDEVTSEKQIISKEQGADNSKGASEDVIYRIDVPANRYDLLCLE   88 (273)
Q Consensus         9 ~~~~~~l~~~~~l~~~lG~~~~~ee~~~llf~~g~Eld~~~~e~~~~~~~~~~~~~~~~~~~~~~kiEi~~nRpDLls~e   88 (273)
                      .++...+.++      +|.+++.+++.++|..+|+.++. +.                    ..+++.+|+-|+|+..-+
T Consensus         6 ~l~~~~i~~~------lG~~i~~~~i~~~L~~Lg~~~~~-~~--------------------~~~~V~vPs~R~Di~~~~   58 (75)
T d1jjcb2           6 PFRPEYANRL------LGTSYPEAEQIAILKRLGCRVEG-EG--------------------PTYRVTPPSHRLDLRLEE   58 (75)
T ss_dssp             EECHHHHHHH------HTCCCCHHHHHHHHHHTTCEEEC-SS--------------------SSEEEECCTTCTTCCSHH
T ss_pred             EECHHHHHHH------hCCCCCHHHHHHHHHHcCCceEe-cC--------------------CcEEEecchhccccCCcc
Confidence            4677888888      99999999999999999999853 21                    139999999999998754


Q ss_pred             hh
Q psy14335         89 GL   90 (273)
Q Consensus        89 Gl   90 (273)
                      -|
T Consensus        59 Dl   60 (75)
T d1jjcb2          59 DL   60 (75)
T ss_dssp             HH
T ss_pred             hH
Confidence            43