Psyllid ID: psy14342
Local Sequence Feature Prediction
| Prediction and (Method) | Result |
|---|
|
|
Close Homologs for Annotation Transfer
Close Homologs in SWISS-PROT Database Detected by BLAST 
Original result of BLAST against SWISS-PROT Database
| ID | Alignment graph | Length |
Definition |
RBH(Q2H) |
RBH(H2Q) |
Q cover |
H cover |
Identity |
E-value |
| Query | 316 | 2.2.26 [Sep-21-2011] | |||||||
| Q6NVJ5 | 1577 | Disco-interacting protein | yes | N/A | 0.344 | 0.069 | 0.843 | 2e-52 | |
| Q9W0S9 | 1773 | Disco-interacting protein | yes | N/A | 0.357 | 0.063 | 0.921 | 1e-48 | |
| Q9Y2E4 | 1556 | Disco-interacting protein | yes | N/A | 0.363 | 0.073 | 0.869 | 7e-47 | |
| Q14689 | 1571 | Disco-interacting protein | no | N/A | 0.357 | 0.071 | 0.852 | 9e-46 | |
| Q8BWT5 | 1523 | Disco-interacting protein | no | N/A | 0.357 | 0.074 | 0.852 | 1e-45 | |
| Q3UH60 | 1574 | Disco-interacting protein | no | N/A | 0.348 | 0.069 | 0.869 | 3e-44 | |
| Q9P265 | 1576 | Disco-interacting protein | no | N/A | 0.348 | 0.069 | 0.860 | 2e-43 | |
| Q10250 | 1517 | Uncharacterized protein C | yes | N/A | 0.351 | 0.073 | 0.333 | 4e-09 |
| >sp|Q6NVJ5|DI2BA_DANRE Disco-interacting protein 2 homolog B-A OS=Danio rerio GN=dip2ba PE=2 SV=1 | Back alignment and function desciption |
|---|
Score = 206 bits (524), Expect = 2e-52, Method: Compositional matrix adjust.
Identities = 97/115 (84%), Positives = 105/115 (91%)
Query: 202 ALDETIMLRGMRYHPIDIENSVMRAHKKIAECAVFTWTNLLVVVVELDGNESEALDLVPL 261
+LDET+ LRG+RYHPIDIE SV RAH+ IAE AVFTWTNLLVVVVEL G+E EALDLVPL
Sbjct: 1463 SLDETLELRGLRYHPIDIETSVSRAHRSIAESAVFTWTNLLVVVVELSGSEQEALDLVPL 1522
Query: 262 VTNAVLEEHHLIVGVAVVVDPGVVPINSRGEKQRMHLRDGFLADQLDPIYVAYNM 316
VTN VL+EHHLIVGV V+VDPGV+PINSRGEKQRMHLRD FLADQLDPIYVAYNM
Sbjct: 1523 VTNVVLKEHHLIVGVVVIVDPGVIPINSRGEKQRMHLRDSFLADQLDPIYVAYNM 1577
|
Danio rerio (taxid: 7955) |
| >sp|Q9W0S9|DIP2_DROME Disco-interacting protein 2 OS=Drosophila melanogaster GN=DIP2 PE=1 SV=2 | Back alignment and function description |
|---|
Score = 193 bits (491), Expect = 1e-48, Method: Compositional matrix adjust.
Identities = 106/115 (92%), Positives = 108/115 (93%)
Query: 202 ALDETIMLRGMRYHPIDIENSVMRAHKKIAECAVFTWTNLLVVVVELDGNESEALDLVPL 261
A+DE I LRGM YHPIDIENSVMR HKKIAECAVFTWTNLLVVVVELDGNESEALDLVPL
Sbjct: 1659 AVDEVISLRGMNYHPIDIENSVMRCHKKIAECAVFTWTNLLVVVVELDGNESEALDLVPL 1718
Query: 262 VTNAVLEEHHLIVGVAVVVDPGVVPINSRGEKQRMHLRDGFLADQLDPIYVAYNM 316
VTN VLE+H LIVGV VVVDPGVVPINSRGEKQRMHLRDGFLADQLDPIYVAYNM
Sbjct: 1719 VTNTVLEDHQLIVGVVVVVDPGVVPINSRGEKQRMHLRDGFLADQLDPIYVAYNM 1773
|
May provide positional cues for axon pathfinding and patterning in the central nervous system. Drosophila melanogaster (taxid: 7227) |
| >sp|Q9Y2E4|DIP2C_HUMAN Disco-interacting protein 2 homolog C OS=Homo sapiens GN=DIP2C PE=2 SV=2 | Back alignment and function description |
|---|
Score = 187 bits (476), Expect = 7e-47, Method: Compositional matrix adjust.
Identities = 100/115 (86%), Positives = 106/115 (92%)
Query: 202 ALDETIMLRGMRYHPIDIENSVMRAHKKIAECAVFTWTNLLVVVVELDGNESEALDLVPL 261
ALDE + LRGMRYHPIDIE SV+RAHK + ECAVFTWTNLLVVVVELDG+E EALDLVPL
Sbjct: 1442 ALDEAMELRGMRYHPIDIETSVIRAHKSVTECAVFTWTNLLVVVVELDGSEQEALDLVPL 1501
Query: 262 VTNAVLEEHHLIVGVAVVVDPGVVPINSRGEKQRMHLRDGFLADQLDPIYVAYNM 316
VTN VLEEH+LIVGV VVVD GV+PINSRGEKQRMHLRDGFLADQLDPIYVAYNM
Sbjct: 1502 VTNVVLEEHYLIVGVVVVVDIGVIPINSRGEKQRMHLRDGFLADQLDPIYVAYNM 1556
|
Homo sapiens (taxid: 9606) |
| >sp|Q14689|DIP2A_HUMAN Disco-interacting protein 2 homolog A OS=Homo sapiens GN=DIP2A PE=1 SV=2 | Back alignment and function description |
|---|
Score = 184 bits (466), Expect = 9e-46, Method: Compositional matrix adjust.
Identities = 98/115 (85%), Positives = 107/115 (93%)
Query: 202 ALDETIMLRGMRYHPIDIENSVMRAHKKIAECAVFTWTNLLVVVVELDGNESEALDLVPL 261
+LDET+ LRGMRYHPIDIE SV+RAH+ IAECAVFTWTNLLVVVVELDG E +ALDLV L
Sbjct: 1457 SLDETLELRGMRYHPIDIETSVIRAHRSIAECAVFTWTNLLVVVVELDGLEQDALDLVAL 1516
Query: 262 VTNAVLEEHHLIVGVAVVVDPGVVPINSRGEKQRMHLRDGFLADQLDPIYVAYNM 316
VTN VLEEH+L+VGV V+VDPGV+PINSRGEKQRMHLRDGFLADQLDPIYVAYNM
Sbjct: 1517 VTNVVLEEHYLVVGVVVIVDPGVIPINSRGEKQRMHLRDGFLADQLDPIYVAYNM 1571
|
May provide positional cues for axon pathfinding and patterning in the central nervous system. Homo sapiens (taxid: 9606) |
| >sp|Q8BWT5|DIP2A_MOUSE Disco-interacting protein 2 homolog A OS=Mus musculus GN=Dip2a PE=2 SV=3 | Back alignment and function description |
|---|
Score = 183 bits (465), Expect = 1e-45, Method: Compositional matrix adjust.
Identities = 98/115 (85%), Positives = 107/115 (93%)
Query: 202 ALDETIMLRGMRYHPIDIENSVMRAHKKIAECAVFTWTNLLVVVVELDGNESEALDLVPL 261
+LDET+ LRGMRYHPIDIE SV+RAH+ IAECAVFTWTNLLVVVVELDG E +ALDLV L
Sbjct: 1409 SLDETLELRGMRYHPIDIETSVIRAHRSIAECAVFTWTNLLVVVVELDGLEQDALDLVAL 1468
Query: 262 VTNAVLEEHHLIVGVAVVVDPGVVPINSRGEKQRMHLRDGFLADQLDPIYVAYNM 316
VTN VLEEH+L+VGV V+VDPGV+PINSRGEKQRMHLRDGFLADQLDPIYVAYNM
Sbjct: 1469 VTNVVLEEHYLVVGVVVIVDPGVIPINSRGEKQRMHLRDGFLADQLDPIYVAYNM 1523
|
May provide positional cues for axon pathfinding and patterning in the central nervous system. Mus musculus (taxid: 10090) |
| >sp|Q3UH60|DIP2B_MOUSE Disco-interacting protein 2 homolog B OS=Mus musculus GN=Dip2b PE=1 SV=1 | Back alignment and function description |
|---|
Score = 179 bits (453), Expect = 3e-44, Method: Compositional matrix adjust.
Identities = 100/115 (86%), Positives = 105/115 (91%)
Query: 202 ALDETIMLRGMRYHPIDIENSVMRAHKKIAECAVFTWTNLLVVVVELDGNESEALDLVPL 261
ALDET+ LRG+RYHPIDIE SV R H+ IAECAVFTWTNLLVVVVEL G+E EALDLVPL
Sbjct: 1460 ALDETLELRGLRYHPIDIETSVSRVHRSIAECAVFTWTNLLVVVVELCGSEQEALDLVPL 1519
Query: 262 VTNAVLEEHHLIVGVAVVVDPGVVPINSRGEKQRMHLRDGFLADQLDPIYVAYNM 316
VTN VLEEH+LIVGV VVVDPGVVPINSRGEKQRMHLRD FLADQLDPIYVAYNM
Sbjct: 1520 VTNVVLEEHYLIVGVVVVVDPGVVPINSRGEKQRMHLRDSFLADQLDPIYVAYNM 1574
|
Mus musculus (taxid: 10090) |
| >sp|Q9P265|DIP2B_HUMAN Disco-interacting protein 2 homolog B OS=Homo sapiens GN=DIP2B PE=1 SV=3 | Back alignment and function description |
|---|
Score = 176 bits (447), Expect = 2e-43, Method: Compositional matrix adjust.
Identities = 99/115 (86%), Positives = 105/115 (91%)
Query: 202 ALDETIMLRGMRYHPIDIENSVMRAHKKIAECAVFTWTNLLVVVVELDGNESEALDLVPL 261
ALDET+ LRG+RYHPIDIE SV R H+ IAECAVFTWTNLLVVVVEL G+E EALDLVPL
Sbjct: 1462 ALDETLELRGLRYHPIDIETSVSRIHRSIAECAVFTWTNLLVVVVELCGSEQEALDLVPL 1521
Query: 262 VTNAVLEEHHLIVGVAVVVDPGVVPINSRGEKQRMHLRDGFLADQLDPIYVAYNM 316
VTN VLEEH+LIVGV VVVDPGV+PINSRGEKQRMHLRD FLADQLDPIYVAYNM
Sbjct: 1522 VTNVVLEEHYLIVGVVVVVDPGVIPINSRGEKQRMHLRDSFLADQLDPIYVAYNM 1576
|
Homo sapiens (taxid: 9606) |
| >sp|Q10250|YD22_SCHPO Uncharacterized protein C56F8.02 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=SPAC56F8.02 PE=4 SV=1 | Back alignment and function description |
|---|
Score = 62.4 bits (150), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 38/114 (33%), Positives = 61/114 (53%), Gaps = 3/114 (2%)
Query: 203 LDETIMLRGMRYHPIDIENSVMRAHKKIAE--CAVFTWTNLLVVVVELDGNESEALDLVP 260
+ ET + G+ + P DIE+++ R+H +IA AVF +VVV+E G + A +VP
Sbjct: 1367 IGETFEVNGLSHFPSDIEDTIERSHPRIARGGTAVFQSAGRVVVVIEALGQDFLAA-IVP 1425
Query: 261 LVTNAVLEEHHLIVGVAVVVDPGVVPINSRGEKQRMHLRDGFLADQLDPIYVAY 314
+V N++L+EH +I V G P + EKQR + ++ +L V Y
Sbjct: 1426 VVINSILDEHQIIADVVAFTSRGNFPRSRLREKQRGKILASWVTGRLRTTQVFY 1479
|
Schizosaccharomyces pombe (strain 972 / ATCC 24843) (taxid: 284812) |
Close Homologs in the Non-Redundant Database Detected by BLAST
Original result of BLAST against Nonredundant Database
| GI | Alignment Graph | Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 316 | ||||||
| 449488454 | 1481 | PREDICTED: disco-interacting protein 2 h | 0.962 | 0.205 | 0.526 | 1e-70 | |
| 390350322 | 1069 | PREDICTED: disco-interacting protein 2 h | 0.341 | 0.101 | 0.869 | 1e-53 | |
| 326922304 | 1826 | PREDICTED: disco-interacting protein 2 h | 0.357 | 0.061 | 0.869 | 8e-53 | |
| 345315171 | 1606 | PREDICTED: disco-interacting protein 2 h | 0.363 | 0.071 | 0.869 | 1e-52 | |
| 449282160 | 1532 | Disco-interacting protein 2 like protein | 0.363 | 0.075 | 0.869 | 1e-52 | |
| 156717254 | 1573 | DIP2 disco-interacting protein 2 homolog | 0.357 | 0.071 | 0.869 | 2e-52 | |
| 118093367 | 1571 | PREDICTED: disco-interacting protein 2 h | 0.357 | 0.071 | 0.869 | 2e-52 | |
| 270004770 | 1556 | hypothetical protein TcasGA2_TC010545 [T | 0.389 | 0.079 | 0.813 | 2e-52 | |
| 449507650 | 1630 | PREDICTED: disco-interacting protein 2 h | 0.363 | 0.070 | 0.869 | 2e-52 | |
| 357622675 | 1504 | hypothetical protein KGM_18662 [Danaus p | 0.313 | 0.065 | 0.932 | 6e-52 |
| >gi|449488454|ref|XP_002190839.2| PREDICTED: disco-interacting protein 2 homolog B [Taeniopygia guttata] | Back alignment and taxonomy information |
|---|
Score = 272 bits (695), Expect = 1e-70, Method: Compositional matrix adjust.
Identities = 180/342 (52%), Positives = 219/342 (64%), Gaps = 38/342 (11%)
Query: 1 MLAYLDFSVSTTGMLAGIKMSHAAVTSLCRSMKLACELYPSRHIALCLDPYCGLGFALWV 60
MLAYLDFSVSTTGML G+KMSHAAV+ LCR++KL CELY SR IA+CLDPYCGLGF LW
Sbjct: 1152 MLAYLDFSVSTTGMLTGVKMSHAAVSGLCRAIKLQCELYSSRQIAICLDPYCGLGFVLWC 1211
Query: 61 LSSVYSGHHSILIPPSEVEVNPALWLSAVSQYRVRDTFCSY--------GMLAGIKMSHA 112
L SVYSGH SILIPP E+E N LWLS VSQY++RDTFCSY G+ ++M A
Sbjct: 1212 LCSVYSGHQSILIPPMELESNLFLWLSTVSQYKIRDTFCSYSVMELCTKGLGNQVEMLKA 1271
Query: 113 AVTSLC--RSMKLACELYPSRHIALCLDPYC-GLGFALWVLSSVYSGHHSILI------- 162
+L R+ + E P + + +G + +S+ + ++ I
Sbjct: 1272 RGINLSCVRTCVVVAEERPRVSLTHSFSKFFKDIGLSSRAVSTTFGSRVNVAICLQGTSG 1331
Query: 163 -PPSEVEVNPALWLSAVSQYRVRDTFCSCNGALYQGA-ERLALDET-IMLRGMRYHPIDI 219
P+ V V+ L ++ RVR + +GA + L L E+ +L G++ ++
Sbjct: 1332 PDPTTVYVD----LKSLRHDRVR--------LVERGAPQSLLLSESGKILPGVKVVIVNP 1379
Query: 220 ENSVMRAHKKIAEC-----AVFTWTNLLVVVVELDGNESEALDLVPLVTNAVLEEHHLIV 274
E + E AVFTWTNLLVVVVEL G E EALDLVPLVTN VLEEH+LIV
Sbjct: 1380 ETKGPLGDSHLGEDQVMLHAVFTWTNLLVVVVELCGCEQEALDLVPLVTNVVLEEHYLIV 1439
Query: 275 GVAVVVDPGVVPINSRGEKQRMHLRDGFLADQLDPIYVAYNM 316
GV VVVDPGV+PINSRGEKQRMHLRD FLADQLDPIYVAYNM
Sbjct: 1440 GVVVVVDPGVIPINSRGEKQRMHLRDSFLADQLDPIYVAYNM 1481
|
Source: Taeniopygia guttata Species: Taeniopygia guttata Genus: Taeniopygia Family: Estrildidae Order: Passeriformes Class: Aves Phylum: Chordata Superkingdom: Eukaryota |
| >gi|390350322|ref|XP_781820.3| PREDICTED: disco-interacting protein 2 homolog C-like [Strongylocentrotus purpuratus] | Back alignment and taxonomy information |
|---|
Score = 216 bits (550), Expect = 1e-53, Method: Compositional matrix adjust.
Identities = 100/115 (86%), Positives = 109/115 (94%)
Query: 202 ALDETIMLRGMRYHPIDIENSVMRAHKKIAECAVFTWTNLLVVVVELDGNESEALDLVPL 261
+LDET+M+RGMRYHPIDIEN+V+R HK + ECAVFTWTNLLVVVVELDG ESEALDLVPL
Sbjct: 955 SLDETLMMRGMRYHPIDIENTVLRCHKNVCECAVFTWTNLLVVVVELDGKESEALDLVPL 1014
Query: 262 VTNAVLEEHHLIVGVAVVVDPGVVPINSRGEKQRMHLRDGFLADQLDPIYVAYNM 316
VTNAVLEEH+LIVGV V+VDP V+PINSRGEKQRMHLRDGFLADQLDPIYVAYNM
Sbjct: 1015 VTNAVLEEHYLIVGVVVMVDPAVIPINSRGEKQRMHLRDGFLADQLDPIYVAYNM 1069
|
Source: Strongylocentrotus purpuratus Species: Strongylocentrotus purpuratus Genus: Strongylocentrotus Family: Strongylocentrotidae Order: Echinoida Class: Echinoidea Phylum: Echinodermata Superkingdom: Eukaryota |
| >gi|326922304|ref|XP_003207390.1| PREDICTED: disco-interacting protein 2 homolog A-like [Meleagris gallopavo] | Back alignment and taxonomy information |
|---|
Score = 213 bits (542), Expect = 8e-53, Method: Compositional matrix adjust.
Identities = 100/115 (86%), Positives = 108/115 (93%)
Query: 202 ALDETIMLRGMRYHPIDIENSVMRAHKKIAECAVFTWTNLLVVVVELDGNESEALDLVPL 261
+LDET+ LRGMRYHPIDIE SV+RAHK IAECAVFTWTNLLVVVVEL+G+E EALDLV L
Sbjct: 1712 SLDETLELRGMRYHPIDIETSVIRAHKSIAECAVFTWTNLLVVVVELEGSEQEALDLVAL 1771
Query: 262 VTNAVLEEHHLIVGVAVVVDPGVVPINSRGEKQRMHLRDGFLADQLDPIYVAYNM 316
VTN VLEEH+LIVGV V+VDPGV+PINSRGEKQRMHLRDGFLADQLDPIYVAYNM
Sbjct: 1772 VTNVVLEEHYLIVGVVVIVDPGVIPINSRGEKQRMHLRDGFLADQLDPIYVAYNM 1826
|
Source: Meleagris gallopavo Species: Meleagris gallopavo Genus: Meleagris Family: Phasianidae Order: Galliformes Class: Aves Phylum: Chordata Superkingdom: Eukaryota |
| >gi|345315171|ref|XP_003429595.1| PREDICTED: disco-interacting protein 2 homolog A-like [Ornithorhynchus anatinus] | Back alignment and taxonomy information |
|---|
Score = 213 bits (541), Expect = 1e-52, Method: Compositional matrix adjust.
Identities = 100/115 (86%), Positives = 108/115 (93%)
Query: 202 ALDETIMLRGMRYHPIDIENSVMRAHKKIAECAVFTWTNLLVVVVELDGNESEALDLVPL 261
+LDET+ LRGMRYHPIDIE SV+RAHK IAECAVFTWTNLLVVVVEL+G+E EALDLV L
Sbjct: 1492 SLDETLELRGMRYHPIDIETSVIRAHKSIAECAVFTWTNLLVVVVELEGSEQEALDLVAL 1551
Query: 262 VTNAVLEEHHLIVGVAVVVDPGVVPINSRGEKQRMHLRDGFLADQLDPIYVAYNM 316
VTN VLEEH+LIVGV V+VDPGV+PINSRGEKQRMHLRDGFLADQLDPIYVAYNM
Sbjct: 1552 VTNVVLEEHYLIVGVVVIVDPGVIPINSRGEKQRMHLRDGFLADQLDPIYVAYNM 1606
|
Source: Ornithorhynchus anatinus Species: Ornithorhynchus anatinus Genus: Ornithorhynchus Family: Ornithorhynchidae Order: Monotremata Class: Mammalia Phylum: Chordata Superkingdom: Eukaryota |
| >gi|449282160|gb|EMC89046.1| Disco-interacting protein 2 like protein A, partial [Columba livia] | Back alignment and taxonomy information |
|---|
Score = 212 bits (540), Expect = 1e-52, Method: Compositional matrix adjust.
Identities = 100/115 (86%), Positives = 108/115 (93%)
Query: 202 ALDETIMLRGMRYHPIDIENSVMRAHKKIAECAVFTWTNLLVVVVELDGNESEALDLVPL 261
+LDET+ LRGMRYHPIDIE SV+RAHK IAECAVFTWTNLLVVVVEL+G+E EALDLV L
Sbjct: 1418 SLDETLELRGMRYHPIDIETSVIRAHKSIAECAVFTWTNLLVVVVELEGSEQEALDLVAL 1477
Query: 262 VTNAVLEEHHLIVGVAVVVDPGVVPINSRGEKQRMHLRDGFLADQLDPIYVAYNM 316
VTN VLEEH+LIVGV V+VDPGV+PINSRGEKQRMHLRDGFLADQLDPIYVAYNM
Sbjct: 1478 VTNVVLEEHYLIVGVVVIVDPGVIPINSRGEKQRMHLRDGFLADQLDPIYVAYNM 1532
|
Source: Columba livia Species: Columba livia Genus: Columba Family: Columbidae Order: Columbiformes Class: Aves Phylum: Chordata Superkingdom: Eukaryota |
| >gi|156717254|ref|NP_001096169.1| DIP2 disco-interacting protein 2 homolog A [Xenopus (Silurana) tropicalis] gi|117558466|gb|AAI25728.1| dip2a protein [Xenopus (Silurana) tropicalis] | Back alignment and taxonomy information |
|---|
Score = 212 bits (540), Expect = 2e-52, Method: Compositional matrix adjust.
Identities = 100/115 (86%), Positives = 107/115 (93%)
Query: 202 ALDETIMLRGMRYHPIDIENSVMRAHKKIAECAVFTWTNLLVVVVELDGNESEALDLVPL 261
+LDET+ LRGMRYHPIDIE SV+RAHK IAECAVFTWTNLLVVV+ELDG E EALDLV L
Sbjct: 1459 SLDETLELRGMRYHPIDIETSVIRAHKNIAECAVFTWTNLLVVVLELDGPEQEALDLVAL 1518
Query: 262 VTNAVLEEHHLIVGVAVVVDPGVVPINSRGEKQRMHLRDGFLADQLDPIYVAYNM 316
VTN VLEEH+LIVGV V+VDPGV+PINSRGEKQRMHLRDGFLADQLDPIYVAYNM
Sbjct: 1519 VTNVVLEEHYLIVGVVVIVDPGVIPINSRGEKQRMHLRDGFLADQLDPIYVAYNM 1573
|
Source: Xenopus (Silurana) tropicalis Species: Xenopus (Silurana) tropicalis Genus: Xenopus Family: Pipidae Order: Anura Class: Amphibia Phylum: Chordata Superkingdom: Eukaryota |
| >gi|118093367|ref|XP_001234676.1| PREDICTED: disco-interacting protein 2 homolog A [Gallus gallus] | Back alignment and taxonomy information |
|---|
Score = 212 bits (540), Expect = 2e-52, Method: Compositional matrix adjust.
Identities = 100/115 (86%), Positives = 108/115 (93%)
Query: 202 ALDETIMLRGMRYHPIDIENSVMRAHKKIAECAVFTWTNLLVVVVELDGNESEALDLVPL 261
+LDET+ LRGMRYHPIDIE SV+RAHK IAECAVFTWTNLLVVVVEL+G+E EALDLV L
Sbjct: 1457 SLDETLELRGMRYHPIDIETSVIRAHKSIAECAVFTWTNLLVVVVELEGSEQEALDLVAL 1516
Query: 262 VTNAVLEEHHLIVGVAVVVDPGVVPINSRGEKQRMHLRDGFLADQLDPIYVAYNM 316
VTN VLEEH+LIVGV V+VDPGV+PINSRGEKQRMHLRDGFLADQLDPIYVAYNM
Sbjct: 1517 VTNVVLEEHYLIVGVVVIVDPGVIPINSRGEKQRMHLRDGFLADQLDPIYVAYNM 1571
|
Source: Gallus gallus Species: Gallus gallus Genus: Gallus Family: Phasianidae Order: Galliformes Class: Aves Phylum: Chordata Superkingdom: Eukaryota |
| >gi|270004770|gb|EFA01218.1| hypothetical protein TcasGA2_TC010545 [Tribolium castaneum] | Back alignment and taxonomy information |
|---|
Score = 212 bits (540), Expect = 2e-52, Method: Compositional matrix adjust.
Identities = 105/129 (81%), Positives = 113/129 (87%), Gaps = 6/129 (4%)
Query: 1 MLAYLDFSVSTTGMLAGIKMSHAAVTSLCRSMKLACELYPSRHIALCLDPYCGLGFALWV 60
MLAYLDFSVSTTGMLAGIKMSHAAVT+LCRSMKLACELYPSRHIALCLDPYCGLGFALW
Sbjct: 1105 MLAYLDFSVSTTGMLAGIKMSHAAVTNLCRSMKLACELYPSRHIALCLDPYCGLGFALWC 1164
Query: 61 LSSVYSGHHSILIPPSEVEVNPALWLSAVSQYRVRDTFCSYGML----AGIKMSHAAVTS 116
LSS+YSGHHSILIPPSEVEVNPALWLSAVSQY+VRDTFCSYG++ G+ S + S
Sbjct: 1165 LSSIYSGHHSILIPPSEVEVNPALWLSAVSQYKVRDTFCSYGVMELCTKGLGSSVNQLKS 1224
Query: 117 LCRSMKLAC 125
R + LAC
Sbjct: 1225 --RGVNLAC 1231
|
Source: Tribolium castaneum Species: Tribolium castaneum Genus: Tribolium Family: Tenebrionidae Order: Coleoptera Class: Insecta Phylum: Arthropoda Superkingdom: Eukaryota |
| >gi|449507650|ref|XP_002192882.2| PREDICTED: disco-interacting protein 2 homolog A [Taeniopygia guttata] | Back alignment and taxonomy information |
|---|
Score = 212 bits (540), Expect = 2e-52, Method: Compositional matrix adjust.
Identities = 100/115 (86%), Positives = 108/115 (93%)
Query: 202 ALDETIMLRGMRYHPIDIENSVMRAHKKIAECAVFTWTNLLVVVVELDGNESEALDLVPL 261
+LDET+ LRGMRYHPIDIE SV+RAHK IAECAVFTWTNLLVVVVEL+G+E EALDLV L
Sbjct: 1516 SLDETLELRGMRYHPIDIETSVIRAHKSIAECAVFTWTNLLVVVVELEGSEQEALDLVAL 1575
Query: 262 VTNAVLEEHHLIVGVAVVVDPGVVPINSRGEKQRMHLRDGFLADQLDPIYVAYNM 316
VTN VLEEH+LIVGV V+VDPGV+PINSRGEKQRMHLRDGFLADQLDPIYVAYNM
Sbjct: 1576 VTNVVLEEHYLIVGVVVIVDPGVIPINSRGEKQRMHLRDGFLADQLDPIYVAYNM 1630
|
Source: Taeniopygia guttata Species: Taeniopygia guttata Genus: Taeniopygia Family: Estrildidae Order: Passeriformes Class: Aves Phylum: Chordata Superkingdom: Eukaryota |
| >gi|357622675|gb|EHJ74101.1| hypothetical protein KGM_18662 [Danaus plexippus] | Back alignment and taxonomy information |
|---|
Score = 210 bits (535), Expect = 6e-52, Method: Compositional matrix adjust.
Identities = 97/104 (93%), Positives = 103/104 (99%)
Query: 1 MLAYLDFSVSTTGMLAGIKMSHAAVTSLCRSMKLACELYPSRHIALCLDPYCGLGFALWV 60
MLAYLDFSVSTTGMLAGIKMSHAAVTSLCRSMK+ACELYPSRHIALCLDPYCGLGFALW
Sbjct: 1051 MLAYLDFSVSTTGMLAGIKMSHAAVTSLCRSMKIACELYPSRHIALCLDPYCGLGFALWC 1110
Query: 61 LSSVYSGHHSILIPPSEVEVNPALWLSAVSQYRVRDTFCSYGML 104
LSS+YSGHHSILIPPSEVE+NPALWLSAVSQY+VRDTFCSYG++
Sbjct: 1111 LSSIYSGHHSILIPPSEVEINPALWLSAVSQYKVRDTFCSYGVM 1154
|
Source: Danaus plexippus Species: Danaus plexippus Genus: Danaus Family: Nymphalidae Order: Lepidoptera Class: Insecta Phylum: Arthropoda Superkingdom: Eukaryota |
Prediction of Gene Ontology (GO) Terms
Close Homologs with Gene Ontology terms Detected by BLAST
Original result of BLAST against Gene Ontology (AMIGO)
| ID |
Alignment graph |
Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 316 | ||||||
| FB|FBgn0024806 | 1773 | DIP2 "DISCO Interacting Protei | 0.363 | 0.064 | 0.817 | 2.5e-90 | |
| UNIPROTKB|F1PTV7 | 1492 | DIP2C "Uncharacterized protein | 0.325 | 0.069 | 0.796 | 7.6e-87 | |
| UNIPROTKB|F1MKT7 | 1528 | DIP2C "Uncharacterized protein | 0.363 | 0.075 | 0.773 | 1.5e-89 | |
| UNIPROTKB|F1NXI6 | 1515 | DIP2A "Uncharacterized protein | 0.363 | 0.075 | 0.782 | 3.7e-89 | |
| ZFIN|ZDB-GENE-091204-2 | 1578 | dip2a "DIP2 disco-interacting | 0.363 | 0.072 | 0.782 | 7.4e-89 | |
| ZFIN|ZDB-GENE-031118-39 | 1547 | dip2c "DIP2 disco-interacting | 0.325 | 0.066 | 0.796 | 9.8e-86 | |
| UNIPROTKB|F1PR40 | 1557 | PCNT "Uncharacterized protein" | 0.363 | 0.073 | 0.773 | 1.1e-88 | |
| MGI|MGI:2385920 | 1523 | Dip2a "DIP2 disco-interacting | 0.363 | 0.075 | 0.765 | 1.9e-87 | |
| UNIPROTKB|Q14689 | 1571 | DIP2A "Disco-interacting prote | 0.363 | 0.073 | 0.765 | 4.6e-87 | |
| UNIPROTKB|E9PER1 | 1572 | DIP2A "Disco-interacting prote | 0.363 | 0.073 | 0.765 | 4.6e-87 |
| FB|FBgn0024806 DIP2 "DISCO Interacting Protein 2" [Drosophila melanogaster (taxid:7227)] | Back alignment and assigned GO terms |
|---|
Score = 472 (171.2 bits), Expect = 2.5e-90, Sum P(3) = 2.5e-90
Identities = 94/115 (81%), Positives = 96/115 (83%)
Query: 202 ALDETIMLRGMRYHPIDIENSVMRAHKKIAECAVFTWTNLLVVVVELDGNESEALDLVPL 261
A+DE I LRGM YHPIDIENSVMR HKKIAECAVFTWTNLLVVVVELDGNESEALDLVPL
Sbjct: 1659 AVDEVISLRGMNYHPIDIENSVMRCHKKIAECAVFTWTNLLVVVVELDGNESEALDLVPL 1718
Query: 262 VTNAVLEEHHLIXXXXXXXXXXXXXINSRGEKQRMHLRDGFLADQLDPIYVAYNM 316
VTN VLE+H LI INSRGEKQRMHLRDGFLADQLDPIYVAYNM
Sbjct: 1719 VTNTVLEDHQLIVGVVVVVDPGVVPINSRGEKQRMHLRDGFLADQLDPIYVAYNM 1773
|
|
| UNIPROTKB|F1PTV7 DIP2C "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)] | Back alignment and assigned GO terms |
|---|
Score = 458 (166.3 bits), Expect = 7.6e-87, Sum P(2) = 7.6e-87
Identities = 82/103 (79%), Positives = 92/103 (89%)
Query: 2 LAYLDFSVSTTGMLAGIKMSHAAVTSLCRSMKLACELYPSRHIALCLDPYCGLGFALWVL 61
LAYLDFSVSTTGMLAG+KMSHAA ++ CRS+KL CELYPSR +A+CLDPYCGLGF LW L
Sbjct: 1068 LAYLDFSVSTTGMLAGVKMSHAATSAFCRSIKLQCELYPSREVAICLDPYCGLGFVLWCL 1127
Query: 62 SSVYSGHHSILIPPSEVEVNPALWLSAVSQYRVRDTFCSYGML 104
SVYSGH SILIPPSE+E NPALWL AVSQY+VRDTFCSY ++
Sbjct: 1128 CSVYSGHQSILIPPSELETNPALWLLAVSQYKVRDTFCSYSVM 1170
|
|
| UNIPROTKB|F1MKT7 DIP2C "Uncharacterized protein" [Bos taurus (taxid:9913)] | Back alignment and assigned GO terms |
|---|
Score = 456 (165.6 bits), Expect = 1.5e-89, Sum P(3) = 1.5e-89
Identities = 89/115 (77%), Positives = 95/115 (82%)
Query: 202 ALDETIMLRGMRYHPIDIENSVMRAHKKIAECAVFTWTNLLVVVVELDGNESEALDLVPL 261
ALDE + LRGMRYHPIDIE SV+RAHK + ECAVFTWTNLLVVVVELDG+E EALDLVPL
Sbjct: 1414 ALDEAMELRGMRYHPIDIETSVIRAHKSVTECAVFTWTNLLVVVVELDGSEQEALDLVPL 1473
Query: 262 VTNAVLEEHHLIXXXXXXXXXXXXXINSRGEKQRMHLRDGFLADQLDPIYVAYNM 316
VTN VLEEH+L+ INSRGEKQRMHLRDGFLADQLDPIYVAYNM
Sbjct: 1474 VTNVVLEEHYLVVGVVVVVDIGVIPINSRGEKQRMHLRDGFLADQLDPIYVAYNM 1528
|
|
| UNIPROTKB|F1NXI6 DIP2A "Uncharacterized protein" [Gallus gallus (taxid:9031)] | Back alignment and assigned GO terms |
|---|
Score = 452 (164.2 bits), Expect = 3.7e-89, Sum P(3) = 3.7e-89
Identities = 90/115 (78%), Positives = 96/115 (83%)
Query: 202 ALDETIMLRGMRYHPIDIENSVMRAHKKIAECAVFTWTNLLVVVVELDGNESEALDLVPL 261
+LDET+ LRGMRYHPIDIE SV+RAHK IAECAVFTWTNLLVVVVEL+G+E EALDLV L
Sbjct: 1401 SLDETLELRGMRYHPIDIETSVIRAHKSIAECAVFTWTNLLVVVVELEGSEQEALDLVAL 1460
Query: 262 VTNAVLEEHHLIXXXXXXXXXXXXXINSRGEKQRMHLRDGFLADQLDPIYVAYNM 316
VTN VLEEH+LI INSRGEKQRMHLRDGFLADQLDPIYVAYNM
Sbjct: 1461 VTNVVLEEHYLIVGVVVIVDPGVIPINSRGEKQRMHLRDGFLADQLDPIYVAYNM 1515
|
|
| ZFIN|ZDB-GENE-091204-2 dip2a "DIP2 disco-interacting protein 2 homolog A" [Danio rerio (taxid:7955)] | Back alignment and assigned GO terms |
|---|
Score = 452 (164.2 bits), Expect = 7.4e-89, Sum P(3) = 7.4e-89
Identities = 90/115 (78%), Positives = 96/115 (83%)
Query: 202 ALDETIMLRGMRYHPIDIENSVMRAHKKIAECAVFTWTNLLVVVVELDGNESEALDLVPL 261
ALDET+ LRGMRYHPIDIE SV+R+HK IAECAVFTWTNLLVVVVEL+G+E EALDLV L
Sbjct: 1464 ALDETLELRGMRYHPIDIETSVIRSHKSIAECAVFTWTNLLVVVVELEGSEQEALDLVAL 1523
Query: 262 VTNAVLEEHHLIXXXXXXXXXXXXXINSRGEKQRMHLRDGFLADQLDPIYVAYNM 316
VTN VLEEH+LI INSRGEKQRMHLRDGFLADQLDPIYVAYNM
Sbjct: 1524 VTNVVLEEHYLIVGVVVVVDPGVIPINSRGEKQRMHLRDGFLADQLDPIYVAYNM 1578
|
|
| ZFIN|ZDB-GENE-031118-39 dip2c "DIP2 disco-interacting protein 2 homolog C (Drosophila)" [Danio rerio (taxid:7955)] | Back alignment and assigned GO terms |
|---|
Score = 457 (165.9 bits), Expect = 9.8e-86, Sum P(2) = 9.8e-86
Identities = 82/103 (79%), Positives = 92/103 (89%)
Query: 2 LAYLDFSVSTTGMLAGIKMSHAAVTSLCRSMKLACELYPSRHIALCLDPYCGLGFALWVL 61
LAYLDFSVSTTGMLAG+KMSH A ++ CRS+KL CELYPSR +A+CLDPYCGLGF LW L
Sbjct: 1125 LAYLDFSVSTTGMLAGVKMSHTATSAFCRSIKLQCELYPSREVAICLDPYCGLGFVLWCL 1184
Query: 62 SSVYSGHHSILIPPSEVEVNPALWLSAVSQYRVRDTFCSYGML 104
SVYSGH SILIPPSE+EVNPALWL AVSQ+RVRDTFCSY ++
Sbjct: 1185 CSVYSGHQSILIPPSELEVNPALWLLAVSQFRVRDTFCSYSVM 1227
|
|
| UNIPROTKB|F1PR40 PCNT "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)] | Back alignment and assigned GO terms |
|---|
Score = 451 (163.8 bits), Expect = 1.1e-88, Sum P(3) = 1.1e-88
Identities = 89/115 (77%), Positives = 95/115 (82%)
Query: 202 ALDETIMLRGMRYHPIDIENSVMRAHKKIAECAVFTWTNLLVVVVELDGNESEALDLVPL 261
+LDET+ LRGMRYHPIDIE SV+RAH+ IAECAVFTWTNLLVVVVELDG E +ALDLV L
Sbjct: 1443 SLDETLELRGMRYHPIDIETSVVRAHRSIAECAVFTWTNLLVVVVELDGLEQDALDLVAL 1502
Query: 262 VTNAVLEEHHLIXXXXXXXXXXXXXINSRGEKQRMHLRDGFLADQLDPIYVAYNM 316
VTN VLEEHHL+ INSRGEKQRMHLRDGFLADQLDPIYVAYNM
Sbjct: 1503 VTNVVLEEHHLVVGVVVIVDPGVIPINSRGEKQRMHLRDGFLADQLDPIYVAYNM 1557
|
|
| MGI|MGI:2385920 Dip2a "DIP2 disco-interacting protein 2 homolog A (Drosophila)" [Mus musculus (taxid:10090)] | Back alignment and assigned GO terms |
|---|
Score = 445 (161.7 bits), Expect = 1.9e-87, Sum P(3) = 1.9e-87
Identities = 88/115 (76%), Positives = 95/115 (82%)
Query: 202 ALDETIMLRGMRYHPIDIENSVMRAHKKIAECAVFTWTNLLVVVVELDGNESEALDLVPL 261
+LDET+ LRGMRYHPIDIE SV+RAH+ IAECAVFTWTNLLVVVVELDG E +ALDLV L
Sbjct: 1409 SLDETLELRGMRYHPIDIETSVIRAHRSIAECAVFTWTNLLVVVVELDGLEQDALDLVAL 1468
Query: 262 VTNAVLEEHHLIXXXXXXXXXXXXXINSRGEKQRMHLRDGFLADQLDPIYVAYNM 316
VTN VLEEH+L+ INSRGEKQRMHLRDGFLADQLDPIYVAYNM
Sbjct: 1469 VTNVVLEEHYLVVGVVVIVDPGVIPINSRGEKQRMHLRDGFLADQLDPIYVAYNM 1523
|
|
| UNIPROTKB|Q14689 DIP2A "Disco-interacting protein 2 homolog A" [Homo sapiens (taxid:9606)] | Back alignment and assigned GO terms |
|---|
Score = 445 (161.7 bits), Expect = 4.6e-87, Sum P(3) = 4.6e-87
Identities = 88/115 (76%), Positives = 95/115 (82%)
Query: 202 ALDETIMLRGMRYHPIDIENSVMRAHKKIAECAVFTWTNLLVVVVELDGNESEALDLVPL 261
+LDET+ LRGMRYHPIDIE SV+RAH+ IAECAVFTWTNLLVVVVELDG E +ALDLV L
Sbjct: 1457 SLDETLELRGMRYHPIDIETSVIRAHRSIAECAVFTWTNLLVVVVELDGLEQDALDLVAL 1516
Query: 262 VTNAVLEEHHLIXXXXXXXXXXXXXINSRGEKQRMHLRDGFLADQLDPIYVAYNM 316
VTN VLEEH+L+ INSRGEKQRMHLRDGFLADQLDPIYVAYNM
Sbjct: 1517 VTNVVLEEHYLVVGVVVIVDPGVIPINSRGEKQRMHLRDGFLADQLDPIYVAYNM 1571
|
|
| UNIPROTKB|E9PER1 DIP2A "Disco-interacting protein 2 homolog A" [Homo sapiens (taxid:9606)] | Back alignment and assigned GO terms |
|---|
Score = 445 (161.7 bits), Expect = 4.6e-87, Sum P(3) = 4.6e-87
Identities = 88/115 (76%), Positives = 95/115 (82%)
Query: 202 ALDETIMLRGMRYHPIDIENSVMRAHKKIAECAVFTWTNLLVVVVELDGNESEALDLVPL 261
+LDET+ LRGMRYHPIDIE SV+RAH+ IAECAVFTWTNLLVVVVELDG E +ALDLV L
Sbjct: 1458 SLDETLELRGMRYHPIDIETSVIRAHRSIAECAVFTWTNLLVVVVELDGLEQDALDLVAL 1517
Query: 262 VTNAVLEEHHLIXXXXXXXXXXXXXINSRGEKQRMHLRDGFLADQLDPIYVAYNM 316
VTN VLEEH+L+ INSRGEKQRMHLRDGFLADQLDPIYVAYNM
Sbjct: 1518 VTNVVLEEHYLVVGVVVIVDPGVIPINSRGEKQRMHLRDGFLADQLDPIYVAYNM 1572
|
|
Prediction of Enzyme Commission (EC) Number
EC Number Prediction by Annotation Transfer from SWISS-PROT Entries
Original result of BLAST against SWISS-PROT
No confident hit for EC number transfering in SWISSPROT detected by BLAST
EC Number Prediction by EFICAz Software
No EC number assignment, probably not an enzyme!
Prediction of Functionally Associated Proteins
Conserved Domains and Related Protein Families
Conserved Domains Detected by RPS-BLAST
Original result of RPS-BLAST against CDD database
| ID | Alignment Graph | Length |
Definition |
E-value |
| Query | 316 | |||
| cd05905 | 556 | cd05905, Dip2, Disco-interacting protein 2 (Dip2) | 4e-39 | |
| cd05905 | 556 | cd05905, Dip2, Disco-interacting protein 2 (Dip2) | 2e-35 | |
| cd05905 | 556 | cd05905, Dip2, Disco-interacting protein 2 (Dip2) | 2e-33 | |
| cd05931 | 547 | cd05931, FAAL, Fatty acyl-AMP ligase (FAAL) | 1e-08 | |
| cd05931 | 547 | cd05931, FAAL, Fatty acyl-AMP ligase (FAAL) | 2e-07 | |
| pfam00501 | 412 | pfam00501, AMP-binding, AMP-binding enzyme | 2e-07 | |
| cd05931 | 547 | cd05931, FAAL, Fatty acyl-AMP ligase (FAAL) | 2e-06 | |
| pfam00501 | 412 | pfam00501, AMP-binding, AMP-binding enzyme | 2e-04 | |
| cd05906 | 560 | cd05906, A_NRPS_TubE_like, The adenylation domain | 0.001 | |
| cd05908 | 499 | cd05908, A_NRPS_MycA_like, The adenylation domain | 0.002 | |
| COG0318 | 534 | COG0318, CaiC, Acyl-CoA synthetases (AMP-forming)/ | 0.003 |
| >gnl|CDD|213273 cd05905, Dip2, Disco-interacting protein 2 (Dip2) | Back alignment and domain information |
|---|
Score = 144 bits (365), Expect = 4e-39
Identities = 38/111 (34%), Positives = 64/111 (57%)
Query: 1 MLAYLDFSVSTTGMLAGIKMSHAAVTSLCRSMKLACELYPSRHIALCLDPYCGLGFALWV 60
AY+++ S G + G+ ++H A+ + C+++K AC+ R I LD G+GF
Sbjct: 147 DTAYIEYKTSKEGSVMGVTVTHQALLTHCQALKQACQYTEGRTIVNVLDFKKGVGFWHGC 206
Query: 61 LSSVYSGHHSILIPPSEVEVNPALWLSAVSQYRVRDTFCSYGMLAGIKMSH 111
L+SV +G H+ILIPP+ ++ NP LW +S+Y+++DT L +H
Sbjct: 207 LTSVMNGMHTILIPPALMKNNPLLWFQIISKYKIKDTLVKSRDLHWALNAH 257
|
Dip2 proteins show sequence similarity to other members of the adenylate forming enzyme family, including insect luciferase, acetyl CoA ligases and the adenylation domain of nonribosomal peptide synthetases (NRPS). However, its function may have diverged from other members of the superfamily. In mouse embryo, Dip2 homolog A plays an important role in the development of both vertebrate and invertebrate nervous systems. Dip2A appears to regulate cell growth and the arrangement of cells in organs. Biochemically, Dip2A functions as a receptor of FSTL1, an extracellular glycoprotein, and may play a role as a cardiovascular protective agent. Length = 556 |
| >gnl|CDD|213273 cd05905, Dip2, Disco-interacting protein 2 (Dip2) | Back alignment and domain information |
|---|
Score = 134 bits (338), Expect = 2e-35
Identities = 47/105 (44%), Positives = 63/105 (60%), Gaps = 2/105 (1%)
Query: 203 LDETIMLRGMRYHPIDIENSVMRAHKKI--AECAVFTWTNLLVVVVELDGNESEALDLVP 260
+DET+ + G+R++P DIE +V+R H I AVF+ T +VVV E G+E E+ VP
Sbjct: 452 IDETLEVSGLRHNPDDIEATVLRVHPMIYRGRIAVFSVTERVVVVAEQRGSEEESFQWVP 511
Query: 261 LVTNAVLEEHHLIVGVAVVVDPGVVPINSRGEKQRMHLRDGFLAD 305
V NA+L EH +IV V +V PG +P GEKQR R FL
Sbjct: 512 RVLNAILSEHQVIVYVVALVPPGTLPKTPLGEKQRSETRASFLEG 556
|
Dip2 proteins show sequence similarity to other members of the adenylate forming enzyme family, including insect luciferase, acetyl CoA ligases and the adenylation domain of nonribosomal peptide synthetases (NRPS). However, its function may have diverged from other members of the superfamily. In mouse embryo, Dip2 homolog A plays an important role in the development of both vertebrate and invertebrate nervous systems. Dip2A appears to regulate cell growth and the arrangement of cells in organs. Biochemically, Dip2A functions as a receptor of FSTL1, an extracellular glycoprotein, and may play a role as a cardiovascular protective agent. Length = 556 |
| >gnl|CDD|213273 cd05905, Dip2, Disco-interacting protein 2 (Dip2) | Back alignment and domain information |
|---|
Score = 128 bits (324), Expect = 2e-33
Identities = 38/123 (30%), Positives = 64/123 (52%), Gaps = 4/123 (3%)
Query: 68 HHSILIPPSEVEVNPALWLSAVSQYRVRDTFCSYGMLAGIKMSHAAVTSLCRSMKLACEL 127
I + PA +A +Y+ G + G+ ++H A+ + C+++K AC+
Sbjct: 129 TLKKPIKDWNPHLPPANLDTAYIEYKT----SKEGSVMGVTVTHQALLTHCQALKQACQY 184
Query: 128 YPSRHIALCLDPYCGLGFALWVLSSVYSGHHSILIPPSEVEVNPALWLSAVSQYRVRDTF 187
R I LD G+GF L+SV +G H+ILIPP+ ++ NP LW +S+Y+++DT
Sbjct: 185 TEGRTIVNVLDFKKGVGFWHGCLTSVMNGMHTILIPPALMKNNPLLWFQIISKYKIKDTL 244
Query: 188 CSC 190
Sbjct: 245 VKS 247
|
Dip2 proteins show sequence similarity to other members of the adenylate forming enzyme family, including insect luciferase, acetyl CoA ligases and the adenylation domain of nonribosomal peptide synthetases (NRPS). However, its function may have diverged from other members of the superfamily. In mouse embryo, Dip2 homolog A plays an important role in the development of both vertebrate and invertebrate nervous systems. Dip2A appears to regulate cell growth and the arrangement of cells in organs. Biochemically, Dip2A functions as a receptor of FSTL1, an extracellular glycoprotein, and may play a role as a cardiovascular protective agent. Length = 556 |
| >gnl|CDD|213297 cd05931, FAAL, Fatty acyl-AMP ligase (FAAL) | Back alignment and domain information |
|---|
Score = 55.7 bits (135), Expect = 1e-08
Identities = 35/110 (31%), Positives = 53/110 (48%), Gaps = 8/110 (7%)
Query: 203 LDETIMLRGMRYHPIDIENSVMRAHKKIAECAVFTWTNL------LVVVVELDGNES--E 254
L + I++RG ++P DIE +V RAH + A ++ LVVV E+ +
Sbjct: 438 LKDLIIIRGRNHYPQDIEATVERAHPALRPGAAAAFSVDGDGEERLVVVAEVRRRGLPAD 497
Query: 255 ALDLVPLVTNAVLEEHHLIVGVAVVVDPGVVPINSRGEKQRMHLRDGFLA 304
L + AV EH + V+V PG +P S G+ QR R+ +LA
Sbjct: 498 LAALAEAIRAAVAREHGVAPADVVLVRPGTLPKTSSGKIQRRACRELYLA 547
|
FAAL belongs to the class I adenylate forming enzyme family and is homologous to fatty acyl-coenzyme A (CoA) ligases (FACLs). However, FAALs produce only the acyl adenylate and are unable to perform the thioester-forming reaction, while FACLs perform a two-step catalytic reaction; AMP ligation followed by CoA ligation using ATP and CoA as cofactors. FAALs have insertion motifs between the N-terminal and C-terminal subdomains that distinguish them from the FACLs. This insertion motif precludes the binding of CoA, thus preventing CoA ligation. It has been suggested that the acyl adenylates serve as substrates for multifunctional polyketide synthases to permit synthesis of complex lipids such as phthiocerol dimycocerosate, sulfolipids, mycolic acids, and mycobactin. Length = 547 |
| >gnl|CDD|213297 cd05931, FAAL, Fatty acyl-AMP ligase (FAAL) | Back alignment and domain information |
|---|
Score = 51.8 bits (125), Expect = 2e-07
Identities = 27/94 (28%), Positives = 45/94 (47%), Gaps = 4/94 (4%)
Query: 2 LAYLDFSVSTTGMLAGIKMSHAAVTSLCRSMKLACELYPSRHIALCLDPY--CGLGFALW 59
+A+L ++ +TG G+ ++H + + R++ A L P L Y GL L
Sbjct: 150 IAFLQYTSGSTGAPKGVMVTHGNLLANLRAIARAFGLDPDDVGVSWLPLYHDMGLIGGL- 208
Query: 60 VLSSVYSGHHSILIPPSEVEVNPALWLSAVSQYR 93
L +Y+G +L+ P P WL A+S+YR
Sbjct: 209 -LQPLYAGFPVVLMSPLAFLRRPLRWLEAISRYR 241
|
FAAL belongs to the class I adenylate forming enzyme family and is homologous to fatty acyl-coenzyme A (CoA) ligases (FACLs). However, FAALs produce only the acyl adenylate and are unable to perform the thioester-forming reaction, while FACLs perform a two-step catalytic reaction; AMP ligation followed by CoA ligation using ATP and CoA as cofactors. FAALs have insertion motifs between the N-terminal and C-terminal subdomains that distinguish them from the FACLs. This insertion motif precludes the binding of CoA, thus preventing CoA ligation. It has been suggested that the acyl adenylates serve as substrates for multifunctional polyketide synthases to permit synthesis of complex lipids such as phthiocerol dimycocerosate, sulfolipids, mycolic acids, and mycobactin. Length = 547 |
| >gnl|CDD|215954 pfam00501, AMP-binding, AMP-binding enzyme | Back alignment and domain information |
|---|
Score = 51.6 bits (124), Expect = 2e-07
Identities = 23/93 (24%), Positives = 43/93 (46%), Gaps = 3/93 (3%)
Query: 2 LAYLDFSVSTTGMLAGIKMSHAAVTSLCRSMKLACELYPSRHIALCLDPYCGLGFALWVL 61
LAY+ ++ TTG G+ ++H + +L + L P + L L P G +
Sbjct: 133 LAYIIYTSGTTGKPKGVMLTHRNLLALAAGLAERFGLTPGDRVLLLL-PLHFDGSVWEIF 191
Query: 62 SSVYSGHHSILIPPSEVEVNPALWLSAVSQYRV 94
+ +G +L+P ++PA L + +Y+V
Sbjct: 192 GPLLAGGTLVLVPKF--TLDPARLLDLIEKYKV 222
|
Length = 412 |
| >gnl|CDD|213297 cd05931, FAAL, Fatty acyl-AMP ligase (FAAL) | Back alignment and domain information |
|---|
Score = 49.1 bits (118), Expect = 2e-06
Identities = 22/75 (29%), Positives = 33/75 (44%), Gaps = 4/75 (5%)
Query: 110 SHAAVTSLCRSMKLACELYPSRHIALCLDPY--CGLGFALWVLSSVYSGHHSILIPPSEV 167
+H + + R++ A L P L Y GL L L +Y+G +L+ P
Sbjct: 169 THGNLLANLRAIARAFGLDPDDVGVSWLPLYHDMGLIGGL--LQPLYAGFPVVLMSPLAF 226
Query: 168 EVNPALWLSAVSQYR 182
P WL A+S+YR
Sbjct: 227 LRRPLRWLEAISRYR 241
|
FAAL belongs to the class I adenylate forming enzyme family and is homologous to fatty acyl-coenzyme A (CoA) ligases (FACLs). However, FAALs produce only the acyl adenylate and are unable to perform the thioester-forming reaction, while FACLs perform a two-step catalytic reaction; AMP ligation followed by CoA ligation using ATP and CoA as cofactors. FAALs have insertion motifs between the N-terminal and C-terminal subdomains that distinguish them from the FACLs. This insertion motif precludes the binding of CoA, thus preventing CoA ligation. It has been suggested that the acyl adenylates serve as substrates for multifunctional polyketide synthases to permit synthesis of complex lipids such as phthiocerol dimycocerosate, sulfolipids, mycolic acids, and mycobactin. Length = 547 |
| >gnl|CDD|215954 pfam00501, AMP-binding, AMP-binding enzyme | Back alignment and domain information |
|---|
Score = 42.7 bits (101), Expect = 2e-04
Identities = 18/82 (21%), Positives = 35/82 (42%), Gaps = 3/82 (3%)
Query: 102 GMLAGIKMSHAAVTSLCRSMKLACELYPSRHIALCLDPYCGLGFALWVLSSVYSGHHSIL 161
G G+ ++H + +L + L P + L L P G + + +G +L
Sbjct: 144 GKPKGVMLTHRNLLALAAGLAERFGLTPGDRVLLLL-PLHFDGSVWEIFGPLLAGGTLVL 202
Query: 162 IPPSEVEVNPALWLSAVSQYRV 183
+P ++PA L + +Y+V
Sbjct: 203 VPKF--TLDPARLLDLIEKYKV 222
|
Length = 412 |
| >gnl|CDD|213274 cd05906, A_NRPS_TubE_like, The adenylation domain (A domain) of a family of nonribosomal peptide synthetases (NRPSs) synthesizing toxins and antitumor agents | Back alignment and domain information |
|---|
Score = 40.3 bits (95), Expect = 0.001
Identities = 22/100 (22%), Positives = 40/100 (40%), Gaps = 6/100 (6%)
Query: 2 LAYLDFSVSTTGMLAGIKMSHAAVTSLCRSMKLACELYPSRHIALC---LDPYCGLGFAL 58
A L + +TG+ + ++H + + + ++L LD G+
Sbjct: 169 PALLLLTSGSTGVPKCVVLTHRNILARSAGTVQVNG-FTPDDVSLNWMPLDHVGGIVM-- 225
Query: 59 WVLSSVYSGHHSILIPPSEVEVNPALWLSAVSQYRVRDTF 98
L VY G I +P + +P WL + +YRV T+
Sbjct: 226 LHLRDVYLGCQQIHVPTDYILADPLRWLDLIDRYRVTITW 265
|
The adenylation (A) domain of NRPS recognizes a specific amino acid or hydroxy acid and activates it as an (amino)-acyl adenylate by hydrolysis of ATP. The activated acyl moiety then forms a thioester to the enzyme-bound cofactor phosphopantetheine of a peptidyl carrier protein domain. This family includes NRPSs that synthesize toxins and antitumor agents; for example, TubE for Tubulysine, CrpA for cryptophycin, TdiA for terrequinone A, KtzG for kutzneride, and Vlm1/Vlm2 for Valinomycin. Nonribosomal peptide synthetases are large multifunctional enzymes which synthesize many therapeutically useful peptides. NRPS has a distinct modular structure in which each module is responsible for the recognition, activation, and, in some cases, modification of a single amino acid residue of the final peptide product. The modules can be subdivided into domains that catalyze specific biochemical reactions. Length = 560 |
| >gnl|CDD|213276 cd05908, A_NRPS_MycA_like, The adenylation domain of nonribosomal peptide synthetases (NRPS) similar to mycosubtilin synthase subunit A (MycA) | Back alignment and domain information |
|---|
Score = 39.6 bits (93), Expect = 0.002
Identities = 24/99 (24%), Positives = 43/99 (43%), Gaps = 2/99 (2%)
Query: 2 LAYLDFSVSTTGMLAGIKMSHAAVTSLCRSMKLACELYPSRHIALCLDPYC-GLGFALWV 60
+A++ FS +TG G+ ++H + + ++ A E+ S + L P +G +
Sbjct: 108 IAFIQFSSGSTGEPKGVILTHKNLLTNIEAIIEAAEI-TSEDVFLSWMPLTHDMGLIGFH 166
Query: 61 LSSVYSGHHSILIPPSEVEVNPALWLSAVSQYRVRDTFC 99
L+ G + L+P P LWL SQ+R
Sbjct: 167 LTPTALGINQYLMPTRLFIRRPLLWLDKASQHRATILSS 205
|
The adenylation (A) domain of NRPS recognizes a specific amino acid or hydroxy acid and activates it as (amino)-acyl adenylate by hydrolysis of ATP. The activated acyl moiety then forms thioester to the enzyme-bound cofactor phosphopantetheine of a peptidyl carrier protein domain. This family includes NRPS similar to mycosubtilin synthase subunit A (MycA). Mycosubtilin, which is characterized by a beta-amino fatty acid moiety linked to the circular heptapeptide Asn-Tyr-Asn-Gln-Pro-Ser-Asn, belongs to the iturin family of lipopeptide antibiotics. The mycosubtilin synthase subunit A (MycA) combines functional domains derived from peptide synthetases, amino transferases, and fatty acid synthases. Nonribosomal peptide synthetases are large multifunction enzymes that synthesize many therapeutically useful peptides. NRPS has a distinct modular structure in which each module is responsible for the recognition, activation, and, in some cases, modification of a single amino acid residue of the final peptide product. The modules can be subdivided into domains that catalyze specific biochemical reactions. Length = 499 |
| >gnl|CDD|223395 COG0318, CaiC, Acyl-CoA synthetases (AMP-forming)/AMP-acid ligases II [Lipid metabolism / Secondary metabolites biosynthesis, transport, and catabolism] | Back alignment and domain information |
|---|
Score = 39.0 bits (91), Expect = 0.003
Identities = 28/110 (25%), Positives = 44/110 (40%), Gaps = 7/110 (6%)
Query: 203 LDETIMLRGMRYHPIDIENSVMRAHKKIAECAVF-----TWTNLLVVVVELDGNESEALD 257
L + I+ G +P +IE V+ H +AE AV W +V VV L L
Sbjct: 423 LKDLIISGGENIYPEEIEA-VLAEHPAVAEAAVVGVPDERWGERVVAVVVLKPGGDAELT 481
Query: 258 LVPLVTNAVLEEHHLIVGVAVVVDPGVVPINSRGEKQRMHLRDGFLADQL 307
L + + L +VV +P + G+ R LR+ + A+
Sbjct: 482 AEEL-RAFLRKRLALYKVPRIVVFVDELPRTASGKIDRRALREEYRAEPR 530
|
Length = 534 |
Conserved Domains Detected by HHsearch
Original result of HHsearch against CDD database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 316 | |||
| COG0365 | 528 | Acs Acyl-coenzyme A synthetases/AMP-(fatty) acid l | 100.0 | |
| KOG1176|consensus | 537 | 100.0 | ||
| COG0318 | 534 | CaiC Acyl-CoA synthetases (AMP-forming)/AMP-acid l | 100.0 | |
| KOG1177|consensus | 596 | 100.0 | ||
| PRK05851 | 525 | long-chain-fatty-acid--[acyl-carrier-protein] liga | 100.0 | |
| PLN02654 | 666 | acetate-CoA ligase | 100.0 | |
| PRK07769 | 631 | long-chain-fatty-acid--CoA ligase; Validated | 100.0 | |
| PLN03051 | 499 | acyl-activating enzyme; Provisional | 100.0 | |
| PTZ00237 | 647 | acetyl-CoA synthetase; Provisional | 100.0 | |
| TIGR02316 | 628 | propion_prpE propionate--CoA ligase. This family c | 100.0 | |
| PRK12476 | 612 | putative fatty-acid--CoA ligase; Provisional | 100.0 | |
| TIGR01217 | 652 | ac_ac_CoA_syn acetoacetyl-CoA synthase. This enzym | 100.0 | |
| TIGR02188 | 625 | Ac_CoA_lig_AcsA acetate--CoA ligase. This model de | 100.0 | |
| PRK06334 | 539 | long chain fatty acid--[acyl-carrier-protein] liga | 100.0 | |
| PRK03584 | 655 | acetoacetyl-CoA synthetase; Provisional | 100.0 | |
| KOG1175|consensus | 626 | 100.0 | ||
| PRK00174 | 637 | acetyl-CoA synthetase; Provisional | 100.0 | |
| PLN02736 | 651 | long-chain acyl-CoA synthetase | 100.0 | |
| PLN02860 | 563 | o-succinylbenzoate-CoA ligase | 100.0 | |
| PRK07445 | 452 | O-succinylbenzoic acid--CoA ligase; Reviewed | 100.0 | |
| PRK07529 | 632 | AMP-binding domain protein; Validated | 100.0 | |
| PRK09192 | 579 | acyl-CoA synthetase; Validated | 100.0 | |
| PRK04319 | 570 | acetyl-CoA synthetase; Provisional | 100.0 | |
| PRK10524 | 629 | prpE propionyl-CoA synthetase; Provisional | 100.0 | |
| PLN03052 | 728 | acetate--CoA ligase; Provisional | 100.0 | |
| PLN02614 | 666 | long-chain acyl-CoA synthetase | 100.0 | |
| PLN02574 | 560 | 4-coumarate--CoA ligase-like | 100.0 | |
| PRK07788 | 549 | acyl-CoA synthetase; Validated | 100.0 | |
| PRK06060 | 705 | acyl-CoA synthetase; Validated | 100.0 | |
| PRK05852 | 534 | acyl-CoA synthetase; Validated | 100.0 | |
| PRK08314 | 546 | long-chain-fatty-acid--CoA ligase; Validated | 100.0 | |
| PRK08043 | 718 | bifunctional acyl-[acyl carrier protein] synthetas | 100.0 | |
| PRK07638 | 487 | acyl-CoA synthetase; Validated | 100.0 | |
| PRK05857 | 540 | acyl-CoA synthetase; Validated | 100.0 | |
| PLN02861 | 660 | long-chain-fatty-acid-CoA ligase | 100.0 | |
| PLN02246 | 537 | 4-coumarate--CoA ligase | 100.0 | |
| TIGR03443 | 1389 | alpha_am_amid L-aminoadipate-semialdehyde dehydrog | 100.0 | |
| COG1022 | 613 | FAA1 Long-chain acyl-CoA synthetases (AMP-forming) | 100.0 | |
| PRK13295 | 547 | cyclohexanecarboxylate-CoA ligase; Reviewed | 100.0 | |
| PRK06839 | 496 | acyl-CoA synthetase; Validated | 100.0 | |
| TIGR01734 | 502 | D-ala-DACP-lig D-alanine--poly(phosphoribitol) lig | 100.0 | |
| PRK06155 | 542 | crotonobetaine/carnitine-CoA ligase; Provisional | 100.0 | |
| PRK05677 | 562 | long-chain-fatty-acid--CoA ligase; Validated | 100.0 | |
| PRK07824 | 358 | O-succinylbenzoic acid--CoA ligase; Provisional | 100.0 | |
| PRK08180 | 614 | feruloyl-CoA synthase; Reviewed | 100.0 | |
| PRK09274 | 552 | peptide synthase; Provisional | 100.0 | |
| TIGR03098 | 515 | ligase_PEP_1 acyl-CoA ligase (AMP-forming), exosor | 100.0 | |
| PRK07787 | 471 | acyl-CoA synthetase; Validated | 100.0 | |
| PRK05691 | 4334 | peptide synthase; Validated | 100.0 | |
| TIGR02275 | 527 | DHB_AMP_lig 2,3-dihydroxybenzoate-AMP ligase. Prot | 100.0 | |
| PRK03640 | 483 | O-succinylbenzoic acid--CoA ligase; Provisional | 100.0 | |
| PRK09029 | 458 | O-succinylbenzoic acid--CoA ligase; Provisional | 100.0 | |
| PRK07867 | 529 | acyl-CoA synthetase; Validated | 100.0 | |
| PRK13388 | 540 | acyl-CoA synthetase; Provisional | 100.0 | |
| PRK06145 | 497 | acyl-CoA synthetase; Validated | 100.0 | |
| PRK12467 | 3956 | peptide synthase; Provisional | 100.0 | |
| TIGR03208 | 538 | cyc_hxne_CoA_lg cyclohexanecarboxylate-CoA ligase. | 100.0 | |
| PRK05620 | 576 | long-chain-fatty-acid--CoA ligase; Validated | 100.0 | |
| PRK08279 | 600 | long-chain-acyl-CoA synthetase; Validated | 100.0 | |
| PRK05850 | 578 | acyl-CoA synthetase; Validated | 100.0 | |
| PRK10946 | 536 | entE enterobactin synthase subunit E; Provisional | 100.0 | |
| PRK08633 | 1146 | 2-acyl-glycerophospho-ethanolamine acyltransferase | 100.0 | |
| PRK05605 | 573 | long-chain-fatty-acid--CoA ligase; Validated | 100.0 | |
| PRK09088 | 488 | acyl-CoA synthetase; Validated | 100.0 | |
| PRK08316 | 523 | acyl-CoA synthetase; Validated | 100.0 | |
| PTZ00342 | 746 | acyl-CoA synthetase; Provisional | 100.0 | |
| PRK06188 | 524 | acyl-CoA synthetase; Validated | 100.0 | |
| PRK06164 | 540 | acyl-CoA synthetase; Validated | 100.0 | |
| PRK13382 | 537 | acyl-CoA synthetase; Provisional | 100.0 | |
| PRK07514 | 504 | malonyl-CoA synthase; Validated | 100.0 | |
| PRK12583 | 558 | acyl-CoA synthetase; Provisional | 100.0 | |
| PRK10252 | 1296 | entF enterobactin synthase subunit F; Provisional | 100.0 | |
| PRK07768 | 545 | long-chain-fatty-acid--CoA ligase; Validated | 100.0 | |
| PRK07470 | 528 | acyl-CoA synthetase; Validated | 100.0 | |
| PRK08008 | 517 | caiC putative crotonobetaine/carnitine-CoA ligase; | 100.0 | |
| PRK08308 | 414 | acyl-CoA synthetase; Validated | 100.0 | |
| PRK07656 | 513 | long-chain-fatty-acid--CoA ligase; Validated | 100.0 | |
| PRK06814 | 1140 | acylglycerophosphoethanolamine acyltransferase; Pr | 100.0 | |
| PRK04813 | 503 | D-alanine--poly(phosphoribitol) ligase subunit 1; | 100.0 | |
| COG1021 | 542 | EntE Peptide arylation enzymes [Secondary metaboli | 100.0 | |
| PRK12316 | 5163 | peptide synthase; Provisional | 100.0 | |
| PRK12492 | 562 | long-chain-fatty-acid--CoA ligase; Provisional | 100.0 | |
| PRK07008 | 539 | long-chain-fatty-acid--CoA ligase; Validated | 100.0 | |
| PLN02387 | 696 | long-chain-fatty-acid-CoA ligase family protein | 100.0 | |
| PRK08315 | 559 | AMP-binding domain protein; Validated | 100.0 | |
| PRK07786 | 542 | long-chain-fatty-acid--CoA ligase; Validated | 100.0 | |
| PLN02330 | 546 | 4-coumarate--CoA ligase-like 1 | 100.0 | |
| PRK12467 | 3956 | peptide synthase; Provisional | 100.0 | |
| PRK12316 | 5163 | peptide synthase; Provisional | 100.0 | |
| PLN03102 | 579 | acyl-activating enzyme; Provisional | 100.0 | |
| PLN02430 | 660 | long-chain-fatty-acid-CoA ligase | 100.0 | |
| PRK06178 | 567 | acyl-CoA synthetase; Validated | 100.0 | |
| PRK06087 | 547 | short chain acyl-CoA synthetase; Reviewed | 100.0 | |
| PRK12582 | 624 | acyl-CoA synthetase; Provisional | 100.0 | |
| PRK05691 | 4334 | peptide synthase; Validated | 100.0 | |
| TIGR01923 | 436 | menE O-succinylbenzoate-CoA ligase. This model rep | 100.0 | |
| PRK06710 | 563 | long-chain-fatty-acid--CoA ligase; Validated | 100.0 | |
| PRK08751 | 560 | putative long-chain fatty acyl CoA ligase; Provisi | 100.0 | |
| PRK13390 | 501 | acyl-CoA synthetase; Provisional | 100.0 | |
| PRK06187 | 521 | long-chain-fatty-acid--CoA ligase; Validated | 100.0 | |
| PRK06018 | 542 | putative acyl-CoA synthetase; Provisional | 100.0 | |
| PRK07059 | 557 | Long-chain-fatty-acid--CoA ligase; Validated | 100.0 | |
| TIGR02262 | 508 | benz_CoA_lig benzoate-CoA ligase family. Character | 100.0 | |
| PTZ00216 | 700 | acyl-CoA synthetase; Provisional | 100.0 | |
| PRK12406 | 509 | long-chain-fatty-acid--CoA ligase; Provisional | 100.0 | |
| PRK08276 | 502 | long-chain-fatty-acid--CoA ligase; Validated | 100.0 | |
| PRK08974 | 560 | long-chain-fatty-acid--CoA ligase; Validated | 100.0 | |
| PRK13383 | 516 | acyl-CoA synthetase; Provisional | 100.0 | |
| TIGR03205 | 541 | pimA dicarboxylate--CoA ligase PimA. PimA, a membe | 100.0 | |
| PLN02479 | 567 | acetate-CoA ligase | 100.0 | |
| PRK13391 | 511 | acyl-CoA synthetase; Provisional | 100.0 | |
| PRK08162 | 545 | acyl-CoA synthetase; Validated | 100.0 | |
| PRK07798 | 533 | acyl-CoA synthetase; Validated | 100.0 | |
| TIGR02372 | 386 | 4_coum_CoA_lig 4-coumarate--CoA ligase, photoactiv | 100.0 | |
| KOG1256|consensus | 691 | 100.0 | ||
| PRK07868 | 994 | acyl-CoA synthetase; Validated | 99.98 | |
| KOG1180|consensus | 678 | 99.97 | ||
| TIGR01733 | 408 | AA-adenyl-dom amino acid adenylation domain. This | 99.96 | |
| KOG1179|consensus | 649 | 99.95 | ||
| PTZ00297 | 1452 | pantothenate kinase; Provisional | 99.95 | |
| TIGR02155 | 422 | PA_CoA_ligase phenylacetate-CoA ligase. Phenylacet | 99.95 | |
| PF00501 | 417 | AMP-binding: AMP-binding enzyme; InterPro: IPR0008 | 99.91 | |
| KOG3628|consensus | 1363 | 99.89 | ||
| TIGR03335 | 445 | F390_ftsA coenzyme F390 synthetase. This enzyme, c | 99.88 | |
| COG1020 | 642 | EntF Non-ribosomal peptide synthetase modules and | 99.79 | |
| COG1541 | 438 | PaaK Coenzyme F390 synthetase [Coenzyme metabolism | 99.77 | |
| KOG1178|consensus | 1032 | 99.72 | ||
| PRK09188 | 365 | serine/threonine protein kinase; Provisional | 99.42 | |
| TIGR03089 | 227 | conserved hypothetical protein TIGR03089. This pro | 99.08 | |
| TIGR02304 | 430 | aden_form_hyp probable adenylate-forming enzyme. M | 99.0 | |
| PF13193 | 73 | AMP-binding_C: AMP-binding enzyme C-terminal domai | 98.97 | |
| PF14535 | 96 | AMP-binding_C_2: AMP-binding enzyme C-terminal dom | 98.55 | |
| KOG3628|consensus | 1363 | 98.54 | ||
| PF04443 | 365 | LuxE: Acyl-protein synthetase, LuxE; InterPro: IPR | 95.2 | |
| PF09580 | 177 | Spore_YhcN_YlaJ: Sporulation lipoprotein YhcN/YlaJ | 80.94 |
| >COG0365 Acs Acyl-coenzyme A synthetases/AMP-(fatty) acid ligases [Lipid metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.5e-48 Score=355.59 Aligned_cols=288 Identities=20% Similarity=0.168 Sum_probs=232.0
Q ss_pred CeEEEEeccCCCCCceEEEEeHHHHHHHH-HHHHHHhcCCCCCceEEecCCcCChhhhHHHHhhhhcCceeeeeCCcccc
Q psy14342 1 MLAYLDFSVSTTGMLAGIKMSHAAVTSLC-RSMKLACELYPSRHIALCLDPYCGLGFALWVLSSVYSGHHSILIPPSEVE 79 (316)
Q Consensus 1 ~~a~i~~TSGTTG~PK~V~~t~~~l~~~~-~~~~~~~~~~~~d~~l~~~p~~h~~g~~~~~~~~l~~G~~~v~~~~~~~~ 79 (316)
||++|+|||||||+||||+|+|+.+.... ......|.+.++|+++...++.|.+|.++.++.+|.+|+++++++...+.
T Consensus 172 dpl~ilYTSGTTG~PKgv~H~~gg~l~~~~~~~~~~~~~~~~Dv~w~~ad~GW~~g~~~~v~~pL~~Gat~~~~eg~p~~ 251 (528)
T COG0365 172 DPLFLLYTSGTTGKPKGIVHSHGGYLVEHRLTAKFHGDLLPGDRFWNSSDPGWIYGLWYSVFSPLASGATTVLYDGRPFY 251 (528)
T ss_pred CeEEEEeCCCCCCCCceEEEeCchHHHHHHHHHHHhhCCCCCCEEEeCCCchhhhCchHHHHHHHhcCCeEEEeCCCCCC
Confidence 68999999999999999999999665544 45556788889999999999999999999999999999999999888777
Q ss_pred cChHHHHHHHhccceeeEEecccchhhHHhhHHhhhhhcccccccc-------------------------cccccccch
Q psy14342 80 VNPALWLSAVSQYRVRDTFCSYGMLAGIKMSHAAVTSLCRSMKLAC-------------------------ELYPSRHIA 134 (316)
Q Consensus 80 ~~~~~~~~~~~~~~~t~~~~~~~~~~~l~~~~~~~~~~~~~~~ls~-------------------------e~~~~yG~t 134 (316)
+|.+++++++++++++++++|+.++.+..... . ++.++|+ .+.+.||+|
T Consensus 252 -~~~~~~~~ie~~~vt~~~tsPT~~R~l~~~g~-~----~~~dlssLr~~~SaGEPLnpe~~~w~~~~~g~~i~d~~gqT 325 (528)
T COG0365 252 -SPERLWEALEKYKVTIFGTSPTFLRRLMKLGL-G----EPYDLSSLRVLGSAGEPLNPEAFEWFYSALGVWILDIYGQT 325 (528)
T ss_pred -CHHHHHHHHHHhCCceEeeCHHHHHHHHhcCC-c----ccccchhheeeeccCCCCCHHHHHHHHHHhCCCEecccccc
Confidence 89999999999999999999999887765543 1 2233333 188999999
Q ss_pred hccCCCCCCCceEEEEeeeccCcccccCCCce-EEecC----------ceEEecC-----CCcccCCCcCC---------
Q psy14342 135 LCLDPYCGLGFALWVLSSVYSGHHSILIPPSE-VEVNP----------ALWLSAV-----SQYRVRDTFCS--------- 189 (316)
Q Consensus 135 e~~~~~~~~~~~~~~~~~~~~g~~~~~~~g~~-~i~d~----------~l~v~~~-----~gY~~~~~~~~--------- 189 (316)
|++.......| ....|..+.|+||++ .++|+ +|.++.+ .+||++++.+.
T Consensus 326 Etg~~~~~~~~------~~~~g~~g~p~pG~~~~vvdd~g~~~~~~~G~Lvi~~~~p~~~~~~w~d~er~~~~y~~~~y~ 399 (528)
T COG0365 326 ETGMGFIAGRP------PVKNGSSGLPLPGYAVRRVDDEGNPVPPGVGELVVRLPWPGMALTYWNDPERYKEAYFGRWYR 399 (528)
T ss_pred ccCccccCCCC------CcCCCCCCCCCCCceeEEECCCCCcCCCCceEEEEeCCCchhhhhhhCCHHHHHHHHhhceee
Confidence 99854433322 122333366899999 88886 3888877 79999985543
Q ss_pred -CCceeeec-Cc---CCcccceeEECCcccChHhHHHHHHHhccccceeEEEeeC-----CcEEEEEEecCCchhhcchH
Q psy14342 190 -CNGALYQG-AE---RLALDETIMLRGMRYHPIDIENSVMRAHKKIAECAVFTWT-----NLLVVVVELDGNESEALDLV 259 (316)
Q Consensus 190 -~d~g~~~~-g~---~GR~dd~i~~~G~~v~p~eIE~~l~~~~p~v~~~~v~~~~-----~~~~~~v~~~~~~~~~~~l~ 259 (316)
+|.+++|+ |. +||+||+||+.|++|+|.|||++|.+ ||.|.||+|++.+ +.+.++|+++++-... +|.
T Consensus 400 tGD~~~~DedGy~~i~GR~DDvI~vsG~Rig~~EvE~~l~~-hP~VaEaAvVg~pd~~kg~~v~afVvL~~g~~~~-~L~ 477 (528)
T COG0365 400 TGDWAERDEDGYFWLHGRSDDVIKVSGKRIGPLEIESVLLA-HPAVAEAAVVGVPDPGKGQIVLAFVVLAAGVEPN-ELA 477 (528)
T ss_pred cCceeEEccCCCEEEEeeccceEeccCeeccHHHHHHHHHh-CcceeeeEEEeccCCCCCcEEEEEEEecCCCChH-HHH
Confidence 36666654 44 99999999999999999999999999 9999999999994 3577788888765444 888
Q ss_pred HHHHHHHHHhcCe--eecEEEEEcCCCcccCCCchhhHHHHHHHHHc
Q psy14342 260 PLVTNAVLEEHHL--IVGVAVVVDPGVVPINSRGEKQRMHLRDGFLA 304 (316)
Q Consensus 260 ~~~~~~l~~~~~~--~~~~~~~~~~~~lP~t~~gKi~r~~l~~~~~~ 304 (316)
+++++++++.... .++.+.|++ .||+|.+|||.|++||+.+.+
T Consensus 478 ~ei~~~vr~~~~~~~~p~~i~fv~--~LPkT~sGKI~R~~lr~~~~~ 522 (528)
T COG0365 478 EEIRRHVARNIGPHAIPRKIRFVD--ELPKTASGKIQRRLLRKILHK 522 (528)
T ss_pred HHHHHHHHhccCcccCCceEEEec--CCCCCCcccHHHHHHHHHHhh
Confidence 8888888655443 345677776 999999999999999998874
|
|
| >KOG1176|consensus | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.7e-47 Score=350.53 Aligned_cols=292 Identities=18% Similarity=0.187 Sum_probs=226.8
Q ss_pred CeEEEEeccCCCCCceEEEEeHHHHHHHHHHHHHHhcCCCCCceEEecCCcCChhhhHHHHhhhhcCceeeeeCCccccc
Q psy14342 1 MLAYLDFSVSTTGMLAGIKMSHAAVTSLCRSMKLACELYPSRHIALCLDPYCGLGFALWVLSSVYSGHHSILIPPSEVEV 80 (316)
Q Consensus 1 ~~a~i~~TSGTTG~PK~V~~t~~~l~~~~~~~~~~~~~~~~d~~l~~~p~~h~~g~~~~~~~~l~~G~~~v~~~~~~~~~ 80 (316)
|++.|+|||||||.||||++||+++..+..+....+.....|+.++.+|++|.+|+...++..+..|++++..+..
T Consensus 185 d~~~il~SSGTTg~PKgV~lsHr~~~~~~~~~~~~~~~~~~~v~l~~lPl~H~~Gl~~~~~~~~~~~~~ii~~~~f---- 260 (537)
T KOG1176|consen 185 DTAAILYSSGTTGLPKGVVLSHRNLIANTLSIKIGWELTSDDVYLCTLPLFHIYGLITLLLSLLAGGTTIICLRKF---- 260 (537)
T ss_pred CeEEEecCCCCCCCCceEEEecHHHHHHHHHhhhcccCCCCceEEEechHHHHhHHHHHHHHHHhCCceEEECCCC----
Confidence 6899999999999999999999999998777777777777899999999999999999444455555555554432
Q ss_pred ChHHHHHHHhccceeeEEecccchhhHHhhHHhhhhhccccc---ccc------------------cccccccchhccCC
Q psy14342 81 NPALWLSAVSQYRVRDTFCSYGMLAGIKMSHAAVTSLCRSMK---LAC------------------ELYPSRHIALCLDP 139 (316)
Q Consensus 81 ~~~~~~~~~~~~~~t~~~~~~~~~~~l~~~~~~~~~~~~~~~---ls~------------------e~~~~yG~te~~~~ 139 (316)
++..+++.+++|++|+++..|+.+..+...+...+....++. ..+ .+.+.||+||+++.
T Consensus 261 ~~~~~~~~i~kykvt~~~~vP~~~~~l~~~p~~~~~~l~sl~~v~~gga~~~~~~~~~~~~~l~~~~v~q~YGmTE~~~~ 340 (537)
T KOG1176|consen 261 DAELFLDLIEKYKVTHLFLVPPVLNMLAKSPIVKKYDLSSLRSVLSGGAPLSPATLEKVKERLPNVTVIQGYGMTEAGGL 340 (537)
T ss_pred CHHHHHHHHHHhCEEEEEcChHHHHHHhcCCccCcccCCccEEEEecCCCCCHHHHHHHHHhCCCceEEEeeccccccCc
Confidence 688999999999999999999998877766522111111111 111 18889999999865
Q ss_pred CCCCCceEEEEeeeccCcccccCCCce-EEecCc-----------eEEecC---CCcccCCCcCCC-----------Cce
Q psy14342 140 YCGLGFALWVLSSVYSGHHSILIPPSE-VEVNPA-----------LWLSAV---SQYRVRDTFCSC-----------NGA 193 (316)
Q Consensus 140 ~~~~~~~~~~~~~~~~g~~~~~~~g~~-~i~d~~-----------l~v~~~---~gY~~~~~~~~~-----------d~g 193 (316)
.+.+... .. ...+..|.+++|.+ ++.++. ||+||+ .|||+||++|.. |.|
T Consensus 341 ~~~~~~~---~e-~k~~svG~~~~g~~~~v~~e~g~~l~~~~~GEI~vrg~~imkGY~~NpeaT~~~~~~~GW~~TGDiG 416 (537)
T KOG1176|consen 341 ITSNDWG---PE-RKPGSVGRLLPGVRVKVLDETGVSLGPNQTGEICVRGPQVMKGYLKNPEATKEAFDDDGWFHTGDLG 416 (537)
T ss_pred eeecCCC---cc-CcccccCccccceEEEeeCCCCCCCCCCCceEEEEECcccchhhcCChHHHHhhcccCCccccCceE
Confidence 5433310 01 23344455788887 444332 999999 999999998763 445
Q ss_pred eeecCc----CCcccceeEECCcccChHhHHHHHHHhccccceeEEEee-----CCcEEEEEEecCC-chhhcchHHHHH
Q psy14342 194 LYQGAE----RLALDETIMLRGMRYHPIDIENSVMRAHKKIAECAVFTW-----TNLLVVVVELDGN-ESEALDLVPLVT 263 (316)
Q Consensus 194 ~~~~g~----~GR~dd~i~~~G~~v~p~eIE~~l~~~~p~v~~~~v~~~-----~~~~~~~v~~~~~-~~~~~~l~~~~~ 263 (316)
++|+.+ ++|.+|+||.+|++|+|.|||++|.+ ||.|.||+||+. ||.++++|+.+++ ..+.+++.+.++
T Consensus 417 y~D~DG~l~IvdR~KdlIk~~G~qv~P~EiE~vL~~-hP~V~eaaVvgipDe~~Ge~p~A~VV~k~g~~lte~di~~~v~ 495 (537)
T KOG1176|consen 417 YFDEDGYLYIVDRSKDLIKYGGEQVSPAEIEAVLLT-HPDVLEAAVVGIPDEVWGETPAAFVVLKKGSTLTEKDIIEYVR 495 (537)
T ss_pred EEcCCCeEEEecchhhheeeCCEEeCHHHHHHHHHh-CCCccEEEEEcccccccCCcceEEEEecCCCcCCHHHHHHHHH
Confidence 554432 99999999999999999999999999 999999999999 4578888888763 345579999999
Q ss_pred HHHHHhcCeeecEEEEEcCCCcccCCCchhhHHHHHHHHHcC
Q psy14342 264 NAVLEEHHLIVGVAVVVDPGVVPINSRGEKQRMHLRDGFLAD 305 (316)
Q Consensus 264 ~~l~~~~~~~~~~~~~~~~~~lP~t~~gKi~r~~l~~~~~~~ 305 (316)
+++.. ++.+ ..+.|++ +||+|++|||+|+.||+.+...
T Consensus 496 k~l~~-y~~~-~~V~Fvd--~lPKs~~GKi~R~~lr~~~~~~ 533 (537)
T KOG1176|consen 496 KKLPA-YKLP-GGVVFVD--ELPKTPNGKILRRKLRDIAKKL 533 (537)
T ss_pred hhCCh-hhcc-CeEEEec--cCCCCCcchHHHHHHHHHHHhc
Confidence 99994 5555 6888988 8999999999999999998863
|
|
| >COG0318 CaiC Acyl-CoA synthetases (AMP-forming)/AMP-acid ligases II [Lipid metabolism / Secondary metabolites biosynthesis, transport, and catabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.5e-44 Score=340.78 Aligned_cols=294 Identities=19% Similarity=0.219 Sum_probs=231.0
Q ss_pred CeEEEEeccCCCCCceEEEEeHHHHHHHHHHHHHHhc--CCCCCceEEecCCcCChhhhHHHHhhhhcCceeeeeCCccc
Q psy14342 1 MLAYLDFSVSTTGMLAGIKMSHAAVTSLCRSMKLACE--LYPSRHIALCLDPYCGLGFALWVLSSVYSGHHSILIPPSEV 78 (316)
Q Consensus 1 ~~a~i~~TSGTTG~PK~V~~t~~~l~~~~~~~~~~~~--~~~~d~~l~~~p~~h~~g~~~~~~~~l~~G~~~v~~~~~~~ 78 (316)
|+++|+|||||||.||||++||+++..+...+...++ +.+.|++++++|++|++|+...++.+++.|+++++..+..|
T Consensus 172 d~a~i~yTSGTTG~PKgv~~th~~~~~~~~~~~~~~~~~~~~~d~~l~~lPl~H~~Gl~~~~~~~~~~G~~~v~~~~~~f 251 (534)
T COG0318 172 DLAFLLYTSGTTGLPKGVVLTHRNLLANAAGIAAALGGGLTPDDVVLSWLPLFHIFGLIVGLLAPLLGGGTLVLLSPEPF 251 (534)
T ss_pred CEEEEEeCCCCCCCCCEeEEecHhHHHHHHHHHHHhcccCCCCceEEEecChHHHHHHHHHHHHHHHcCCEEEeCCCCCc
Confidence 6899999999999999999999999999999989898 88999999999999999999977777999999999875433
Q ss_pred ccChHHHHHHHhccceeeEEecccchhhHHhhHHhhhhh----cccccccc------------------cccccccchhc
Q psy14342 79 EVNPALWLSAVSQYRVRDTFCSYGMLAGIKMSHAAVTSL----CRSMKLAC------------------ELYPSRHIALC 136 (316)
Q Consensus 79 ~~~~~~~~~~~~~~~~t~~~~~~~~~~~l~~~~~~~~~~----~~~~~ls~------------------e~~~~yG~te~ 136 (316)
++..++..+.++++++++.+|+++..+.......... .+.+..++ .+.+.||+||+
T Consensus 252 --~~~~~~~~i~~~~~t~~~~vPt~~~~ll~~~~~~~~~~~~~lr~~~~gg~~~~~~~~~~~~~~~~~~~i~~~YG~TE~ 329 (534)
T COG0318 252 --DPEEVLWLIEKYKVTVLSGVPTFLRELLDNPEKDDDDLSSSLRLVLSGGAPLPPELLERFEERFGPIAILEGYGLTET 329 (534)
T ss_pred --CHHHHHHHHHHhcceEEecchHHHHHHHhCCccCccccccceEEEEecCCcCCHHHHHHHHHHhCCCceEEeeccccc
Confidence 6778889999999999999999988765544332211 11111111 17789999999
Q ss_pred cCCCCCCCceEEEEeeeccCcccccCCCce-EEecCc-----------eEEecC---CCcccCCCcCCC-----------
Q psy14342 137 LDPYCGLGFALWVLSSVYSGHHSILIPPSE-VEVNPA-----------LWLSAV---SQYRVRDTFCSC----------- 190 (316)
Q Consensus 137 ~~~~~~~~~~~~~~~~~~~g~~~~~~~g~~-~i~d~~-----------l~v~~~---~gY~~~~~~~~~----------- 190 (316)
+.....+.+... ....+..|.++||++ +++|++ |+++|| .|||++++.+..
T Consensus 330 ~~~~~~~~~~~~---~~~~~~~G~~~pg~~v~Ivd~~~~~~~pg~vGei~irgp~v~~GY~~~pe~t~~~f~~~gW~~TG 406 (534)
T COG0318 330 SPVVTINPPDDL---LAKPGSVGRPLPGVEVRIVDPDGGEVLPGEVGEIWVRGPNVMKGYWNRPEATAEAFDEDGWLRTG 406 (534)
T ss_pred CceeecCCCchh---hhcCCcccccCCCcEEEEEeCCCCccCCCCceEEEEECchhhhhhcCChHHHHHhhccCCeeeec
Confidence 865544432110 112233356899999 998843 999999 999999776543
Q ss_pred Cceeeec-Cc---CCcccceeEECCcccChHhHHHHHHHhccccceeEEEeeC-----CcEEEEEEecCCch---hhcch
Q psy14342 191 NGALYQG-AE---RLALDETIMLRGMRYHPIDIENSVMRAHKKIAECAVFTWT-----NLLVVVVELDGNES---EALDL 258 (316)
Q Consensus 191 d~g~~~~-g~---~GR~dd~i~~~G~~v~p~eIE~~l~~~~p~v~~~~v~~~~-----~~~~~~v~~~~~~~---~~~~l 258 (316)
|.|++++ |. +||.||+|+.+|+||+|.|||++|.+ ||.|.+++|++++ +.++++++.++... +.+++
T Consensus 407 Dlg~~d~~G~l~i~gR~kd~I~~gG~ni~p~eiE~~l~~-~~~V~~aavvgvpd~~~Ge~~~a~v~~~~~~~~~~~~~~i 485 (534)
T COG0318 407 DLGYVDEDGYLYIVGRLKDLIISGGENIYPEEIEAVLAE-HPAVAEAAVVGVPDERWGERVVAVVVLKPGGDAELTAEEL 485 (534)
T ss_pred ceEEEcCCccEEEEeccceEEEeCCeEECHHHHHHHHHh-CCCcceEEEEeCCCCccCceEEEEEEEcCCCCCCCCHHHH
Confidence 4444444 33 99999999999999999999999999 9999999999994 57888888876522 55778
Q ss_pred HHHHHHHHHHhcCeeecEEEEEcCCCcccCCCchhhHHHHHHHHHc
Q psy14342 259 VPLVTNAVLEEHHLIVGVAVVVDPGVVPINSRGEKQRMHLRDGFLA 304 (316)
Q Consensus 259 ~~~~~~~l~~~~~~~~~~~~~~~~~~lP~t~~gKi~r~~l~~~~~~ 304 (316)
.+.++..+. .++.| ..+.+++ .||+|++||++|++|++.+.+
T Consensus 486 ~~~~~~~l~-~~~~P-~~v~~v~--~lP~t~sGKi~r~~lr~~~~~ 527 (534)
T COG0318 486 RAFLRKRLA-LYKVP-RIVVFVD--ELPRTASGKIDRRALREEYRA 527 (534)
T ss_pred HHHHHhhhh-cccCC-eEEEEeC--CCCCCCchhhhHHHHHHHHHh
Confidence 888888776 55555 4566664 999999999999999999887
|
|
| >KOG1177|consensus | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.4e-45 Score=317.64 Aligned_cols=296 Identities=17% Similarity=0.160 Sum_probs=231.8
Q ss_pred CeEEEEeccCCCCCceEEEEeHHHHHHHHHHHHHHhcCCCCCceEEecCCcCChhhhHHHHhhhhcCceeeeeCCccccc
Q psy14342 1 MLAYLDFSVSTTGMLAGIKMSHAAVTSLCRSMKLACELYPSRHIALCLDPYCGLGFALWVLSSVYSGHHSILIPPSEVEV 80 (316)
Q Consensus 1 ~~a~i~~TSGTTG~PK~V~~t~~~l~~~~~~~~~~~~~~~~d~~l~~~p~~h~~g~~~~~~~~l~~G~~~v~~~~~~~~~ 80 (316)
|++-|.|||||||.|||+.+||.++++++.+....+++.+.+++....|++|.+|...+.+.++..|+++|++.|..
T Consensus 235 d~~niQFTSGTTG~PKgatLsH~~~~Nna~~vg~r~g~~e~~~i~~~~Pl~H~~G~~~~~ma~l~~gat~Vfp~~~f--- 311 (596)
T KOG1177|consen 235 DAVNIQFTSGTTGAPKGATLSHYNFLNNARAVGARAGYNEKHRICIPNPLYHCFGCVLGVMAALMHGATIVFPAPSF--- 311 (596)
T ss_pred CceEEEeccCCCCCCcceeeehhhhhhhHHHHHHHhCcCcceEEEecCchHHHHHHHHHHHHHHHhCcEEEeeCCCC---
Confidence 57889999999999999999999999999999999999998899999999999999888999999999999988774
Q ss_pred ChHHHHHHHhccceeeEEecccchhhHHhhHHhhhh---hcccc-----cccc-------------cccccccchhccCC
Q psy14342 81 NPALWLSAVSQYRVRDTFCSYGMLAGIKMSHAAVTS---LCRSM-----KLAC-------------ELYPSRHIALCLDP 139 (316)
Q Consensus 81 ~~~~~~~~~~~~~~t~~~~~~~~~~~l~~~~~~~~~---~~~~~-----~ls~-------------e~~~~yG~te~~~~ 139 (316)
+|...++++++++.|.++.+|+++..+.+....... ..++. ..+. ++...||+||+++.
T Consensus 312 ~~k~alqai~~ekcT~l~gtPtM~~Dlln~~~~~~~~~s~lr~~vigGa~~s~eLlk~iv~~~~m~~i~v~YG~TEts~v 391 (596)
T KOG1177|consen 312 DPKDALQAISNEKCTTLYGTPTMFVDLLNIPQKQQVDLSSLRKGVIGGAPVSPELLKLIVNQMNMKDIAVAYGLTETSPV 391 (596)
T ss_pred ChHHHHHHHHhhceEEEecChHHHHHHhcchhhccCchhhhhhheeCCCCCCHHHHHHHHHhhCceeeEEEeeccccCcc
Confidence 688899999999999999999999877765554210 01111 1111 27789999999854
Q ss_pred CCCCCc-eEEEEeeeccCcccccCCCce-EEecCc-----------eEEecC---CCcccCCCcCCC-----------Cc
Q psy14342 140 YCGLGF-ALWVLSSVYSGHHSILIPPSE-VEVNPA-----------LWLSAV---SQYRVRDTFCSC-----------NG 192 (316)
Q Consensus 140 ~~~~~~-~~~~~~~~~~g~~~~~~~g~~-~i~d~~-----------l~v~~~---~gY~~~~~~~~~-----------d~ 192 (316)
.....+ +.......+.|+ .+++.+ .++|.+ |++||. .|||++++.+.+ |.
T Consensus 392 ~~~~~~~D~~~~~~ksVG~---~m~h~Ea~iv~~~g~~v~~~~~Gel~iRGY~tMl~Ywg~~~kT~eti~~drW~~TGDi 468 (596)
T KOG1177|consen 392 LFMSLLGDPPEERIKSVGH---LMDHYEAAIVDKDGSEVPLGTKGELLIRGYSTMLGYWGEEEKTKETIGNDRWYDTGDI 468 (596)
T ss_pred eeeecCCCCHHHHHhhhhh---cccccccccccCCCCccccCCCceEEEEechhheeecCCcccchhhcccccceecCce
Confidence 322221 000011122233 677888 777644 999999 899998776644 44
Q ss_pred eeeecCc----CCcccceeEECCcccChHhHHHHHHHhccccceeEEEeeC-----CcEEEEEEecCCch---hhcchHH
Q psy14342 193 ALYQGAE----RLALDETIMLRGMRYHPIDIENSVMRAHKKIAECAVFTWT-----NLLVVVVELDGNES---EALDLVP 260 (316)
Q Consensus 193 g~~~~g~----~GR~dd~i~~~G~~v~p~eIE~~l~~~~p~v~~~~v~~~~-----~~~~~~v~~~~~~~---~~~~l~~ 260 (316)
|.+++.+ +||.||+|+.+|++|+|.|||+.|.. ||.|.++.|+|++ +.+++++.+..... ..++|.+
T Consensus 469 ~~m~enG~i~iVGRskdmI~rGGENVyP~ElE~fL~~-hp~V~~a~VVGV~D~R~GE~VCA~vRLqe~~e~~~t~E~lKa 547 (596)
T KOG1177|consen 469 AVMDENGTIEIVGRSKDMIIRGGENVYPTELEDFLNK-HPLVKEAHVVGVPDERLGEEVCACVRLQEGAEGKTTAETLKA 547 (596)
T ss_pred EEEcCCCcEEEEEcccCeEEeCCcccChHHHHHHHhh-CCCeeeEEEEccCCCcccceEEEEEEeeccccccccHHHHHH
Confidence 4445543 99999999999999999999999999 9999999999994 46788887765433 4577778
Q ss_pred HHHHHHHHhcCeeecEEEEEcCCCcccCCCchhhHHHHHHHHHcCCCC
Q psy14342 261 LVTNAVLEEHHLIVGVAVVVDPGVVPINSRGEKQRMHLRDGFLADQLD 308 (316)
Q Consensus 261 ~~~~~l~~~~~~~~~~~~~~~~~~lP~t~~gKi~r~~l~~~~~~~~~~ 308 (316)
+++.++. .++.| +.+.+++ .+|+|-+|||+|-++|+.+. +.+.
T Consensus 548 ~Ck~kla-HFKiP-ky~vf~~--~FPlT~tGKIqKFeir~~~k-~~l~ 590 (596)
T KOG1177|consen 548 MCKGKLA-HFKIP-KYFVFVD--EFPLTTTGKIQKFEIREMSK-GHLG 590 (596)
T ss_pred HHhcccc-cccCC-cEEEEec--cCcccccccchhHHHHHHHH-hhcc
Confidence 7877755 66666 5666666 79999999999999999988 4544
|
|
| >PRK05851 long-chain-fatty-acid--[acyl-carrier-protein] ligase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=1e-42 Score=329.89 Aligned_cols=302 Identities=19% Similarity=0.139 Sum_probs=220.5
Q ss_pred CeEEEEeccCCCCCceEEEEeHHHHHHHHHHHHHHhcCC-CCCceEEecCCcCChhhhHHHHhhhhcCceeeeeCCcccc
Q psy14342 1 MLAYLDFSVSTTGMLAGIKMSHAAVTSLCRSMKLACELY-PSRHIALCLDPYCGLGFALWVLSSVYSGHHSILIPPSEVE 79 (316)
Q Consensus 1 ~~a~i~~TSGTTG~PK~V~~t~~~l~~~~~~~~~~~~~~-~~d~~l~~~p~~h~~g~~~~~~~~l~~G~~~v~~~~~~~~ 79 (316)
|+++|+|||||||.||||++||+++...+..+...+++. ++|+++.++|++|++|++. ++.++..|+++++.++..+.
T Consensus 153 d~a~i~~TSGTTG~PKgV~~th~~~~~~~~~~~~~~~~~~~~d~~l~~~pl~h~~g~~~-~~~~l~~G~~~~~~~~~~~~ 231 (525)
T PRK05851 153 GPAVLQGTAGSTGTPRTAILSPGAVLSNLRGLNARVGLDAATDVGCSWLPLYHDMGLAF-LLTAALAGAPLWLAPTTAFS 231 (525)
T ss_pred CeEEEEeCCCCCCCCcEEEecHHHHHHHHHHHHHHhCCCCCCCeEEEcCCCccCccHHH-HHHHHHcCCeEEEcCHHHHH
Confidence 589999999999999999999999999988888889998 8999999999999999976 78999999999987654455
Q ss_pred cChHHHHHHHhccceeeEEecccchhhHHh-hHHhhh----hhcccccccc-----------------------cccccc
Q psy14342 80 VNPALWLSAVSQYRVRDTFCSYGMLAGIKM-SHAAVT----SLCRSMKLAC-----------------------ELYPSR 131 (316)
Q Consensus 80 ~~~~~~~~~~~~~~~t~~~~~~~~~~~l~~-~~~~~~----~~~~~~~ls~-----------------------e~~~~y 131 (316)
.+|..|++.+++++++++ .+|+.+..+.. ...... ...+.+-.++ .+++.|
T Consensus 232 ~~~~~~~~~i~~~~~t~~-~~p~~~~~~l~~~~~~~~~~~l~~lr~~~~gG~~l~~~~~~~~~~~~~~~g~~~~~~~~~Y 310 (525)
T PRK05851 232 ASPFRWLSWLSDSRATLT-AAPNFAYNLIGKYARRVSDVDLGALRVALNGGEPVDCDGFERFATAMAPFGFDAGAAAPSY 310 (525)
T ss_pred HCHHHHHHHHHHhCCeEE-eCCcHHHHHHHHhhccccCCCHHHhheeEeccccCCHHHHHHHHHHHhhcCCChhhccccc
Confidence 578889999999999965 55655443321 111000 0011111111 267889
Q ss_pred cchhccCCCCCCCc----eEEEEe------eeccCcccccCCCce-EEecCc------------eEEecC---CCcccCC
Q psy14342 132 HIALCLDPYCGLGF----ALWVLS------SVYSGHHSILIPPSE-VEVNPA------------LWLSAV---SQYRVRD 185 (316)
Q Consensus 132 G~te~~~~~~~~~~----~~~~~~------~~~~g~~~~~~~g~~-~i~d~~------------l~v~~~---~gY~~~~ 185 (316)
|+||++.......+ ...... ....++.|.++||++ +++|++ |+++|+ .|||+++
T Consensus 311 G~TE~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vG~p~~g~~v~i~d~~~~~~~~~g~~GEl~v~g~~~~~GY~~~~ 390 (525)
T PRK05851 311 GLAESTCAVTVPVPGIGLRVDEVTTDDGSGARRHAVLGNPIPGMEVRISPGDGAAGVAGREIGEIEIRGASMMSGYLGQA 390 (525)
T ss_pred chhhhceEEEecCCCCCceeeeeccccCcccceeeeecCCCCCcEEEEECCCCCccCCCCCeEEEEEecCchhhccccCC
Confidence 99998643322111 000000 001124456899999 887632 999999 8999987
Q ss_pred CcC------CCCceeeecCc---CCcccceeEECCcccChHhHHHHHHHhccccceeEEEeeC-----CcEEEEEEecCC
Q psy14342 186 TFC------SCNGALYQGAE---RLALDETIMLRGMRYHPIDIENSVMRAHKKIAECAVFTWT-----NLLVVVVELDGN 251 (316)
Q Consensus 186 ~~~------~~d~g~~~~g~---~GR~dd~i~~~G~~v~p~eIE~~l~~~~p~v~~~~v~~~~-----~~~~~~v~~~~~ 251 (316)
+.+ ++|.|++++|. +||.||+||++|+||+|.|||++|.+ ||.|.+|+|++++ +...+++.....
T Consensus 391 ~~~~~~~~~TGDl~~~~~G~l~~~GR~dd~i~~~G~~v~p~eIE~~l~~-~p~V~~~~vv~~~~~~~~~~~~~~v~~~~~ 469 (525)
T PRK05851 391 PIDPDDWFPTGDLGYLVDGGLVVCGRAKELITVAGRNIFPTEIERVAAQ-VRGVREGAVVAVGTGEGSARPGLVIAAEFR 469 (525)
T ss_pred ccCCCCceeccceEEEECCEEEEEeecCCEEEECCEEeCHHHHHHHHHh-CCCcccceEEEEEecCCCCceeEEEEEEec
Confidence 643 33777776665 99999999999999999999999999 9999999999873 234444333222
Q ss_pred chhhcchHHHHHHHHHHhcCeeecEEEEEcCCCcccCCCchhhHHHHHHHHHcC
Q psy14342 252 ESEALDLVPLVTNAVLEEHHLIVGVAVVVDPGVVPINSRGEKQRMHLRDGFLAD 305 (316)
Q Consensus 252 ~~~~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~lP~t~~gKi~r~~l~~~~~~~ 305 (316)
..+.+++.+++++++.......+..+.+++.++||+|++||++|++|++.+.++
T Consensus 470 ~~~~~~~~~~~~~~l~~~l~~~P~~~~~v~~~~lP~t~~GKi~r~~L~~~~~~~ 523 (525)
T PRK05851 470 GPDEAGARSEVVQRVASECGVVPSDVVFVAPGSLPRTSSGKLRRLAVKRSLEAA 523 (525)
T ss_pred CcchHHHHHHHHHHHHHHhCCCccEEEEECCCCcCcCcchHHHHHHHHHHHHhc
Confidence 233456778888888865434446788887668999999999999999988764
|
|
| >PLN02654 acetate-CoA ligase | Back alignment and domain information |
|---|
Probab=100.00 E-value=2e-42 Score=335.88 Aligned_cols=298 Identities=13% Similarity=0.061 Sum_probs=220.3
Q ss_pred CeEEEEeccCCCCCceEEEEeHHHHHH-HHHHHHHHhcCCCCCceEEecCCcCChhhhHHHHhhhhcCceeeeeCCcccc
Q psy14342 1 MLAYLDFSVSTTGMLAGIKMSHAAVTS-LCRSMKLACELYPSRHIALCLDPYCGLGFALWVLSSVYSGHHSILIPPSEVE 79 (316)
Q Consensus 1 ~~a~i~~TSGTTG~PK~V~~t~~~l~~-~~~~~~~~~~~~~~d~~l~~~p~~h~~g~~~~~~~~l~~G~~~v~~~~~~~~ 79 (316)
|+++|+|||||||.||||+|+|++++. ....+...++++++|+++...|+.|..|..+.++.+|..|+++++.++....
T Consensus 276 d~~~ilyTSGTTG~PKgVv~sh~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~g~~~~~~~~L~~G~tvvl~~~~~~~ 355 (666)
T PLN02654 276 DPLFLLYTSGSTGKPKGVLHTTGGYMVYTATTFKYAFDYKPTDVYWCTADCGWITGHSYVTYGPMLNGATVLVFEGAPNY 355 (666)
T ss_pred CceEEEecCCCCCCCceEEecccHHHHHHHHHHHHhcCCCCCcEEEEcCCchhhhhhHHHHHHHHHcCceEEEECCCCCC
Confidence 689999999999999999999998754 4456677789999999999999999999888789999999999998765555
Q ss_pred cChHHHHHHHhccceeeEEecccchhhHHhhHHhh-h----hhcccccccc--------------------cccccccch
Q psy14342 80 VNPALWLSAVSQYRVRDTFCSYGMLAGIKMSHAAV-T----SLCRSMKLAC--------------------ELYPSRHIA 134 (316)
Q Consensus 80 ~~~~~~~~~~~~~~~t~~~~~~~~~~~l~~~~~~~-~----~~~~~~~ls~--------------------e~~~~yG~t 134 (316)
.+|.+++++++++++|+++.+|+++..+....... . ...+.+-..+ .+.+.||+|
T Consensus 356 ~~~~~~~~~i~~~~vt~~~~~P~~~~~l~~~~~~~~~~~~l~~Lr~i~~~Ge~l~~~~~~~~~~~~g~~~~~i~~~yg~T 435 (666)
T PLN02654 356 PDSGRCWDIVDKYKVTIFYTAPTLVRSLMRDGDEYVTRHSRKSLRVLGSVGEPINPSAWRWFFNVVGDSRCPISDTWWQT 435 (666)
T ss_pred CCHHHHHHHHHHhCCeEEEeCHHHHHHHHhhCccccccCChhheeEEEEecCCCCHHHHHHHHHHhCCCCCceecccccc
Confidence 67899999999999999999999987665432210 0 0011111111 156789999
Q ss_pred hccCCCCCCCceEEEEeeeccCcccccCCCce-EEecCc-----------eEEec--C---CCcccCCCcCCC-------
Q psy14342 135 LCLDPYCGLGFALWVLSSVYSGHHSILIPPSE-VEVNPA-----------LWLSA--V---SQYRVRDTFCSC------- 190 (316)
Q Consensus 135 e~~~~~~~~~~~~~~~~~~~~g~~~~~~~g~~-~i~d~~-----------l~v~~--~---~gY~~~~~~~~~------- 190 (316)
|++.......+.. .....|..+.|+||++ +++|++ |++++ | .|||++++.+..
T Consensus 436 E~g~~~~~~~~~~---~~~~~gs~G~p~~g~~v~i~d~~g~~~~~~~~Gel~v~~~~p~~~~gy~~~~~~~~~~~~~~~~ 512 (666)
T PLN02654 436 ETGGFMITPLPGA---WPQKPGSATFPFFGVQPVIVDEKGKEIEGECSGYLCVKKSWPGAFRTLYGDHERYETTYFKPFA 512 (666)
T ss_pred ccCCeeeccCCCC---CCCCCCccCCCCCCceEEEECCCCCCCCCCCceEEEEcCCCchhhhhhcCChHHHHHhhhhcCC
Confidence 9865332222110 0122344556899999 888764 89998 4 899999865421
Q ss_pred ------Cceeeec-Cc---CCcccceeEECCcccChHhHHHHHHHhccccceeEEEeeC-----CcEEEEEEecCCchhh
Q psy14342 191 ------NGALYQG-AE---RLALDETIMLRGMRYHPIDIENSVMRAHKKIAECAVFTWT-----NLLVVVVELDGNESEA 255 (316)
Q Consensus 191 ------d~g~~~~-g~---~GR~dd~i~~~G~~v~p~eIE~~l~~~~p~v~~~~v~~~~-----~~~~~~v~~~~~~~~~ 255 (316)
|.|++++ |. +||.||+||++|++|+|.|||++|.+ ||.|.+++|+++. +.+++++++.+.....
T Consensus 513 g~~~TGD~~~~d~dG~l~i~GR~dd~I~~~G~ri~p~EIE~~l~~-~p~V~eaaVvg~~d~~~ge~~~a~Vvl~~~~~~~ 591 (666)
T PLN02654 513 GYYFSGDGCSRDKDGYYWLTGRVDDVINVSGHRIGTAEVESALVS-HPQCAEAAVVGIEHEVKGQGIYAFVTLVEGVPYS 591 (666)
T ss_pred CEEEeCceEEECCCCcEEEeeeccCeEEeCCEEECHHHHHHHHHh-CCCeeeEEEEeeEcCCCCeEEEEEEEECCCCCCC
Confidence 4555543 33 99999999999999999999999999 9999999999983 4677777777653333
Q ss_pred cchHHHHHHHHHHhcCee--ecEEEEEcCCCcccCCCchhhHHHHHHHHHc
Q psy14342 256 LDLVPLVTNAVLEEHHLI--VGVAVVVDPGVVPINSRGEKQRMHLRDGFLA 304 (316)
Q Consensus 256 ~~l~~~~~~~l~~~~~~~--~~~~~~~~~~~lP~t~~gKi~r~~l~~~~~~ 304 (316)
+++.++++..+.+..... +..+.+++ .||+|.+||++|+.|++.+..
T Consensus 592 ~~l~~~l~~~~~~~L~~~~~P~~i~~v~--~lP~T~sGKi~r~~l~~~~~~ 640 (666)
T PLN02654 592 EELRKSLILTVRNQIGAFAAPDKIHWAP--GLPKTRSGKIMRRILRKIASR 640 (666)
T ss_pred HHHHHHHHHHHHHhCCCCcCCCEEEECC--CCCCCCCcCchHHHHHHHHcC
Confidence 345555555555443332 24555554 899999999999999998764
|
|
| >PRK07769 long-chain-fatty-acid--CoA ligase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=1e-41 Score=329.73 Aligned_cols=310 Identities=18% Similarity=0.228 Sum_probs=227.1
Q ss_pred CeEEEEeccCCCCCceEEEEeHHHHHHHHHHHHHHhcCCCCCceEEecCCcCChhhhHHHHhhhhcCceeeeeCCccccc
Q psy14342 1 MLAYLDFSVSTTGMLAGIKMSHAAVTSLCRSMKLACELYPSRHIALCLDPYCGLGFALWVLSSVYSGHHSILIPPSEVEV 80 (316)
Q Consensus 1 ~~a~i~~TSGTTG~PK~V~~t~~~l~~~~~~~~~~~~~~~~d~~l~~~p~~h~~g~~~~~~~~l~~G~~~v~~~~~~~~~ 80 (316)
|+++|+|||||||.||||++||+++...+......+++.++|+++.++|++|++|++. ++.+++.|+++++..+..+..
T Consensus 181 d~a~i~~TSGTTG~PKgV~~sh~~l~~~~~~~~~~~~~~~~d~~l~~~Pl~h~~gl~~-~~~~~~~G~~~~~~~~~~~~~ 259 (631)
T PRK07769 181 TIAYLQYTSGSTRIPAGVQITHLNLPTNVLQVIDALEGQEGDRGVSWLPFFHDMGLIT-VLLPALLGHYITFMSPAAFVR 259 (631)
T ss_pred CeEEEEeCCCCCCCCcEEEEcHHHHHHHHHHHHHHcCCCCcceEEEeCCCcCchhhHH-HHHHHhhCCeEEEEChHHHHh
Confidence 5899999999999999999999999988888888888999999999999999999987 566778899999987755556
Q ss_pred ChHHHHHHHhccce---eeEEecccchhhHHhh---HHh----hh-hhcccccccc-----------------------c
Q psy14342 81 NPALWLSAVSQYRV---RDTFCSYGMLAGIKMS---HAA----VT-SLCRSMKLAC-----------------------E 126 (316)
Q Consensus 81 ~~~~~~~~~~~~~~---t~~~~~~~~~~~l~~~---~~~----~~-~~~~~~~ls~-----------------------e 126 (316)
+|..|++.++++++ +++...|+++..+... ... .. ...+.+-..+ .
T Consensus 260 ~~~~~~~~i~~~~~~~~~~~~~~p~~~~~l~~~~~~~~~~~~~~~l~~lr~~~~gg~~l~~~~~~~~~~~~~~~g~~~~~ 339 (631)
T PRK07769 260 RPGRWIRELARKPGGTGGTFSAAPNFAFEHAAARGLPKDGEPPLDLSNVKGLLNGSEPVSPASMRKFNEAFAPYGLPPTA 339 (631)
T ss_pred CHHHHHHHHHhhccccCceEeeCCchHHHHHHhhccchhcccCcchhheeeEEeccCCCCHHHHHHHHHHHhhcCCChhh
Confidence 88999999999886 6677777766543321 100 00 0001111111 1
Q ss_pred ccccccchhccCCCCCCCc--eEE---EEe-----------------eeccCcccccCCCce-EEecCc-----------
Q psy14342 127 LYPSRHIALCLDPYCGLGF--ALW---VLS-----------------SVYSGHHSILIPPSE-VEVNPA----------- 172 (316)
Q Consensus 127 ~~~~yG~te~~~~~~~~~~--~~~---~~~-----------------~~~~g~~~~~~~g~~-~i~d~~----------- 172 (316)
+++.||+||++........ ... ... ....++.|.+++|.+ +++|++
T Consensus 340 i~~~YG~TE~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~s~G~~~~~~~~~ivd~~~g~~~~~ge~G 419 (631)
T PRK07769 340 IKPSYGMAEATLFVSTTPMDEEPTVIYVDRDELNAGRFVEVPADAPNAVAQVSAGKVGVSEWAVIVDPETASELPDGQIG 419 (631)
T ss_pred cccccchhhheeEEeccCCCCCceEEEEcHHHHhCCCeEecCCCCCCceeEEeCCCcCCCcEEEEEcCCCCcCCCCCCEE
Confidence 5688999998643222111 000 000 000112344788888 888742
Q ss_pred -eEEecC---CCcccCCCcCC----------------------------CCceeeecCc---CCcccceeEECCcccChH
Q psy14342 173 -LWLSAV---SQYRVRDTFCS----------------------------CNGALYQGAE---RLALDETIMLRGMRYHPI 217 (316)
Q Consensus 173 -l~v~~~---~gY~~~~~~~~----------------------------~d~g~~~~g~---~GR~dd~i~~~G~~v~p~ 217 (316)
|+++|+ .|||++++.+. +|.|++++|. +||.||+||++|+||+|.
T Consensus 420 El~v~gp~v~~GY~~~~~~t~~~f~~~~~~~~~~~~~~~~~~~~gw~~TGDlg~~~dG~l~i~GR~~d~Ik~~G~~V~p~ 499 (631)
T PRK07769 420 EIWLHGNNIGTGYWGKPEETAATFQNILKSRLSESHAEGAPDDALWVRTGDYGVYFDGELYITGRVKDLVIIDGRNHYPQ 499 (631)
T ss_pred EEEecCCCccccccCChhHHHHHHhhhcccccccccccCcccCCCeeeccccccEECCEEEEEcccccEEEECCeeeCHH
Confidence 999999 89999876442 1444445444 999999999999999999
Q ss_pred hHHHHHHHhccccce--eEEEeeCC------------------------cEEEEEEecCC--chhhcchHHHHHHHHHHh
Q psy14342 218 DIENSVMRAHKKIAE--CAVFTWTN------------------------LLVVVVELDGN--ESEALDLVPLVTNAVLEE 269 (316)
Q Consensus 218 eIE~~l~~~~p~v~~--~~v~~~~~------------------------~~~~~v~~~~~--~~~~~~l~~~~~~~l~~~ 269 (316)
|||++|.+.||.|.+ ++|+++.+ .+++++++.+. ..+.+++.+++++.+...
T Consensus 500 eIE~~l~~~~p~v~~~~~av~~v~d~~~~~~~~~~~~~~~~~~~~~~ge~~~a~v~~~~~~~~~~~~~l~~~~~~~l~~~ 579 (631)
T PRK07769 500 DLEYTAQEATKALRTGYVAAFSVPANQLPQVVFDDSHAGLKFDPEDTSEQLVIVAERAPGAHKLDPQPIADDIRAAIAVR 579 (631)
T ss_pred HHHHHHHhccccccCCcEEEEEecccccccccccccccccccccCCCCccEEEEEEecCccccccHHHHHHHHHHHHHHH
Confidence 999999854899998 88887543 46777776654 234578999999998866
Q ss_pred cCeeecEEEEEcCCCcccCCCchhhHHHHHHHHHcCCCCcch
Q psy14342 270 HHLIVGVAVVVDPGVVPINSRGEKQRMHLRDGFLADQLDPIY 311 (316)
Q Consensus 270 ~~~~~~~~~~~~~~~lP~t~~gKi~r~~l~~~~~~~~~~~~~ 311 (316)
++.+++.+.++..+.||+|++|||+|++|++.|.++.+..-|
T Consensus 580 ~~~~p~~~~~v~~~~lP~t~~GKi~r~~l~~~~~~~~~~~~~ 621 (631)
T PRK07769 580 HGVTVRDVLLVPAGSIPRTSSGKIARRACRAAYLDGSLRSGY 621 (631)
T ss_pred cCCCccEEEEECCCccccCCCcHHHHHHHHHHHHcCCCcccc
Confidence 665556788887678999999999999999999998876655
|
|
| >PLN03051 acyl-activating enzyme; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.1e-41 Score=317.78 Aligned_cols=292 Identities=17% Similarity=0.077 Sum_probs=210.7
Q ss_pred CeEEEEeccCCCCCceEEEEeHHHHHHHHHHHHHHhcCCCCCceEEecCCcCChhhhHHHHhhhhcCceeeeeCCccccc
Q psy14342 1 MLAYLDFSVSTTGMLAGIKMSHAAVTSLCRSMKLACELYPSRHIALCLDPYCGLGFALWVLSSVYSGHHSILIPPSEVEV 80 (316)
Q Consensus 1 ~~a~i~~TSGTTG~PK~V~~t~~~l~~~~~~~~~~~~~~~~d~~l~~~p~~h~~g~~~~~~~~l~~G~~~v~~~~~~~~~ 80 (316)
|+++|+|||||||.||||++||++++.........++++++|+++..+|++|.+++.. ++.++..|+++++.+.. .
T Consensus 120 d~a~i~yTSGTTG~PKgV~~sh~~~~~~~~~~~~~~~~~~~d~~l~~~pl~h~~g~~~-~~~~l~~G~t~v~~~~~---~ 195 (499)
T PLN03051 120 SVTNILFSSGTTGEPKAIPWTHLSPLRCASDGWAHMDIQPGDVVCWPTNLGWMMGPWL-LYSAFLNGATLALYGGA---P 195 (499)
T ss_pred ceEEEEeCCCCCCCCceEEEccchHHHHHHHHHHhcCCCCCCEEEEccCcceeeehHH-HHHHHHcCCEEEecCCC---C
Confidence 5899999999999999999999998876665566778889999999999999999764 88999999999987532 1
Q ss_pred ChHHHHHHHhccceeeEEecccchhhHHhhHH------hhhhhcccccccc-------------------cccccccchh
Q psy14342 81 NPALWLSAVSQYRVRDTFCSYGMLAGIKMSHA------AVTSLCRSMKLAC-------------------ELYPSRHIAL 135 (316)
Q Consensus 81 ~~~~~~~~~~~~~~t~~~~~~~~~~~l~~~~~------~~~~~~~~~~ls~-------------------e~~~~yG~te 135 (316)
++..+++.++++++|+++.+|+++..+..... .... .+.+-..+ .+.+.||+||
T Consensus 196 ~~~~~~~~i~~~~vt~~~~vP~~~~~l~~~~~~~~~~~~~~~-Lr~i~~gG~~~~~~~~~~~~~~~~~~~~~~~~YG~TE 274 (499)
T PLN03051 196 LGRGFGKFVQDAGVTVLGLVPSIVKAWRHTGAFAMEGLDWSK-LRVFASTGEASAVDDVLWLSSVRGYYKPVIEYCGGTE 274 (499)
T ss_pred CcHHHHHHHHHhCCcEEEeCHHHHHHHHhcCccccccCCchh-heEEEecCCCCCHHHHHHHHHhccccceeEeeecccc
Confidence 46789999999999999999998876544321 1110 11111111 2567899999
Q ss_pred ccCCCCCCCceEEEEeeeccCcccccCCCce-EEecCc-------------eEEecC-----CCcccCCCc---------
Q psy14342 136 CLDPYCGLGFALWVLSSVYSGHHSILIPPSE-VEVNPA-------------LWLSAV-----SQYRVRDTF--------- 187 (316)
Q Consensus 136 ~~~~~~~~~~~~~~~~~~~~g~~~~~~~g~~-~i~d~~-------------l~v~~~-----~gY~~~~~~--------- 187 (316)
++..+....+. .....++.|.+.+|++ +++|++ |+++|+ .|||+++..
T Consensus 275 ~~~~~~~~~~~----~~~~~~~~G~p~~~~~~~ivd~~g~~~~~g~~~~Gel~v~g~~~~~~~gy~~~~~~~~~~~g~~~ 350 (499)
T PLN03051 275 LASGYISSTLL----QPQAPGAFSTASLGTRFVLLNDNGVPYPDDQPCVGEVALAPPMLGASDRLLNADHDKVYYKGMPM 350 (499)
T ss_pred ccceeeccccc----CCCCCccccCCCCCceEEEECCCCCCCCCCCCcceEEEEecCcCCCCccccCCcccceeeecCCc
Confidence 86433221110 0111234455889999 887742 899998 489875421
Q ss_pred ---------CCCCceeeec-Cc---CCcccceeEECCcccChHhHHHHHHHhccccceeEEEeeC------CcEEEEE--
Q psy14342 188 ---------CSCNGALYQG-AE---RLALDETIMLRGMRYHPIDIENSVMRAHKKIAECAVFTWT------NLLVVVV-- 246 (316)
Q Consensus 188 ---------~~~d~g~~~~-g~---~GR~dd~i~~~G~~v~p~eIE~~l~~~~p~v~~~~v~~~~------~~~~~~v-- 246 (316)
-++|.|++++ |. +||.||+||++|+||+|.|||++|.+.||.|.+|+|+++. +.+++++
T Consensus 351 ~~~~~~~~~~TGDlg~~d~dG~l~~~gR~~d~ik~~G~~v~p~EIE~~l~~~~p~V~~aavvg~~d~~~g~~~~~a~v~~ 430 (499)
T PLN03051 351 YGSKGMPLRRHGDIMKRTPGGYFCVQGRADDTMNLGGIKTSSVEIERACDRAVAGIAETAAVGVAPPDGGPELLVIFLVL 430 (499)
T ss_pred cccCCcceeecCCeEEECCCCcEEEEeccCCEEeeCCEECCHHHHHHHHHhcCCCcceEEEEEecCCCCCceEEEEEEEc
Confidence 2235555554 33 9999999999999999999999998438999999999883 2456665
Q ss_pred -EecCCc--hhhcchHHHHHHHHHHhc---CeeecEEEEEcCCCcccCCCchhhHHHHHHHHHc
Q psy14342 247 -ELDGNE--SEALDLVPLVTNAVLEEH---HLIVGVAVVVDPGVVPINSRGEKQRMHLRDGFLA 304 (316)
Q Consensus 247 -~~~~~~--~~~~~l~~~~~~~l~~~~---~~~~~~~~~~~~~~lP~t~~gKi~r~~l~~~~~~ 304 (316)
++++.. .+.+++.+++++.+.+.. ..+. .+.+++ +||+|++||++|++|++.+.+
T Consensus 431 ~v~~~~~~~~~~~~l~~~~~~~l~~~l~~~~~~~-~i~~v~--~lP~t~~GKi~r~~L~~~~~~ 491 (499)
T PLN03051 431 GEEKKGFDQARPEALQKKFQEAIQTNLNPLFKVS-RVKIVP--ELPRNASNKLLRRVLRDQLKK 491 (499)
T ss_pred ceecccccccchHHHHHHHHHHHHhhcCCccCCc-eEEEcC--CCCCCCCccHHHHHHHHHHHH
Confidence 444432 344677777777665432 2232 466665 899999999999999988765
|
|
| >PTZ00237 acetyl-CoA synthetase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3e-41 Score=326.57 Aligned_cols=297 Identities=10% Similarity=0.040 Sum_probs=211.3
Q ss_pred CeEEEEeccCCCCCceEEEEeHHH-HHHHHHHHHHHhcCCCCCceEEecCCcCChhhhHHHHhhhhcCceeeeeCCcccc
Q psy14342 1 MLAYLDFSVSTTGMLAGIKMSHAA-VTSLCRSMKLACELYPSRHIALCLDPYCGLGFALWVLSSVYSGHHSILIPPSEVE 79 (316)
Q Consensus 1 ~~a~i~~TSGTTG~PK~V~~t~~~-l~~~~~~~~~~~~~~~~d~~l~~~p~~h~~g~~~~~~~~l~~G~~~v~~~~~~~~ 79 (316)
|+++|+|||||||.||||+++|++ +..........+...++|+++...|+.|..+... ++.++..|+++++.+...+.
T Consensus 255 d~~~IlyTSGTTG~PKgV~~sh~~~l~~~~~~~~~~~~~~~~d~~~~~~~~~w~~~~~~-~~~~l~~G~t~v~~~~~~~~ 333 (647)
T PTZ00237 255 HPLYILYTSGTTGNSKAVVRSNGPHLVGLKYYWRSIIEKDIPTVVFSHSSIGWVSFHGF-LYGSLSLGNTFVMFEGGIIK 333 (647)
T ss_pred CcEEEEEcCCCCCCCCeEEEcCcHHHHHHHHHHHHhcCCCCCcEEEEcCCCceEeeHHH-HHHHHhCCcEEEEeCCCCCC
Confidence 689999999999999999999998 5444444455567778899999999999876654 88999999999998653221
Q ss_pred c--ChHHHHHHHhccceeeEEecccchhhHHhhHHhh-------h-hhcccccccc-----------------ccccccc
Q psy14342 80 V--NPALWLSAVSQYRVRDTFCSYGMLAGIKMSHAAV-------T-SLCRSMKLAC-----------------ELYPSRH 132 (316)
Q Consensus 80 ~--~~~~~~~~~~~~~~t~~~~~~~~~~~l~~~~~~~-------~-~~~~~~~ls~-----------------e~~~~yG 132 (316)
. .+..+++.++++++|+++.+|+++..+....... . ...+.+-..+ .+.+.||
T Consensus 334 p~~~~~~~~~~i~~~~vt~~~~~P~~~~~l~~~~~~~~~~~~~~~l~~Lr~i~~~G~~l~~~~~~~~~~~~g~~i~~~yG 413 (647)
T PTZ00237 334 NKHIEDDLWNTIEKHKVTHTLTLPKTIRYLIKTDPEATIIRSKYDLSNLKEIWCGGEVIEESIPEYIENKLKIKSSRGYG 413 (647)
T ss_pred CCCchHHHHHHHHHhCeEEEEeCHHHHHHHHhhCccccccccccCcchheEEEecCccCCHHHHHHHHHhcCCCEEeeec
Confidence 1 1678999999999999999999887665432110 0 0011111111 2778999
Q ss_pred chhccCCCCCCCceEEEEeeeccCcccccCCCce-EEecCc-----------eEEecC------CCcccCCCcCC-----
Q psy14342 133 IALCLDPYCGLGFALWVLSSVYSGHHSILIPPSE-VEVNPA-----------LWLSAV------SQYRVRDTFCS----- 189 (316)
Q Consensus 133 ~te~~~~~~~~~~~~~~~~~~~~g~~~~~~~g~~-~i~d~~-----------l~v~~~------~gY~~~~~~~~----- 189 (316)
+||++.......+. .....+..|.|+||++ +++|++ |++++| .|||++++.+.
T Consensus 414 ~TE~~~~~~~~~~~----~~~~~~s~G~p~~g~~~~i~d~~g~~~~~ge~GEl~v~~p~~p~~~~gy~~~~~~~~~~f~~ 489 (647)
T PTZ00237 414 QTEIGITYLYCYGH----INIPYNATGVPSIFIKPSILSEDGKELNVNEIGEVAFKLPMPPSFATTFYKNDEKFKQLFSK 489 (647)
T ss_pred hHHhChhhhccCCC----CCCCCCCCccCcCCceEEEECCCCCCCCCCCceEEEEeccCCchhhCceeCCHHHHHHHHhC
Confidence 99997433222110 0111234556899999 888754 899975 79999876542
Q ss_pred -------CCceeeec-Cc---CCcccceeEECCcccChHhHHHHHHHhccccceeEEEeeC-----CcEEEEEEecCCc-
Q psy14342 190 -------CNGALYQG-AE---RLALDETIMLRGMRYHPIDIENSVMRAHKKIAECAVFTWT-----NLLVVVVELDGNE- 252 (316)
Q Consensus 190 -------~d~g~~~~-g~---~GR~dd~i~~~G~~v~p~eIE~~l~~~~p~v~~~~v~~~~-----~~~~~~v~~~~~~- 252 (316)
+|.|++++ |. +||.||+||++|+||+|.|||++|.+ ||.|.+|+|+++. +.+++++.+.+..
T Consensus 490 ~~g~~~TGDlg~~d~dG~l~i~GR~dd~i~~~G~rI~p~eIE~~l~~-~p~V~eaavvg~~~~~~g~~~~a~Vv~~~~~~ 568 (647)
T PTZ00237 490 FPGYYNSGDLGFKDENGYYTIVSRSDDQIKISGNKVQLNTIETSILK-HPLVLECCSIGIYDPDCYNVPIGLLVLKQDQS 568 (647)
T ss_pred CCCEEECCcEEEECCCCeEEEEeccCCEEEECCEEeCHHHHHHHHHh-CCCceeeEEEeeEcCCCCCEEEEEEEeccCcc
Confidence 25555544 32 99999999999999999999999999 9999999999994 4567777666421
Q ss_pred ---hhhcchHHHHHHHHHHhcCee--ecEEEEEcCCCcccCCCchhhHHHHHHHHHcC
Q psy14342 253 ---SEALDLVPLVTNAVLEEHHLI--VGVAVVVDPGVVPINSRGEKQRMHLRDGFLAD 305 (316)
Q Consensus 253 ---~~~~~l~~~~~~~l~~~~~~~--~~~~~~~~~~~lP~t~~gKi~r~~l~~~~~~~ 305 (316)
.+.+++.+++++.+.+..... +..+.+++ +||+|++||++|+.|++.+...
T Consensus 569 ~~~~~~~~l~~~i~~~~~~~l~~~~~P~~i~~v~--~lP~T~sGKi~R~~Lr~~~~~~ 624 (647)
T PTZ00237 569 NQSIDLNKLKNEINNIITQDIESLAVLRKIIIVN--QLPKTKTGKIPRQIISKFLNDS 624 (647)
T ss_pred ccCCCHHHHHHHHHHHHHhhcCccccCcEEEEcC--CCCCCCCccEeHHHHHHHHcCC
Confidence 122355556665555433322 24555555 8999999999999999997643
|
|
| >TIGR02316 propion_prpE propionate--CoA ligase | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.7e-41 Score=325.51 Aligned_cols=300 Identities=20% Similarity=0.173 Sum_probs=216.1
Q ss_pred CeEEEEeccCCCCCceEEEEeHHHHHH-HHHHHHHHhcCCCCCceEEecCCcCChhhhHHHHhhhhcCceeeeeCCcccc
Q psy14342 1 MLAYLDFSVSTTGMLAGIKMSHAAVTS-LCRSMKLACELYPSRHIALCLDPYCGLGFALWVLSSVYSGHHSILIPPSEVE 79 (316)
Q Consensus 1 ~~a~i~~TSGTTG~PK~V~~t~~~l~~-~~~~~~~~~~~~~~d~~l~~~p~~h~~g~~~~~~~~l~~G~~~v~~~~~~~~ 79 (316)
|+++|+|||||||.||||+++|+++.. ........++++++|+++...|+.|+.|+.+.++.++..|+++++.+.....
T Consensus 233 ~~a~ilyTSGTTG~PKgV~~sh~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~g~~~~~~~~L~~G~~~v~~~~~~~~ 312 (628)
T TIGR02316 233 EPSYILYTSGTTGKPKGVQRDVGGYAVALALSMWAIFGIRAGQVMFSASDVGWVVGHSYIVYAPLLAGAATVLYEGLPTN 312 (628)
T ss_pred CcEEEEECCCCCCCCceEEECCcHHHHHHHHHHHHhcCCCCCcEEEEcCCCCeeehhhHHHHHHHhccceEEEeCCCCCC
Confidence 579999999999999999999998754 3455666788999999999999999999877789999999999998765445
Q ss_pred cChHHHHHHHhccceeeEEecccchhhHHhhHHh-hh----hhcccccccc-----------------cccccccchhcc
Q psy14342 80 VNPALWLSAVSQYRVRDTFCSYGMLAGIKMSHAA-VT----SLCRSMKLAC-----------------ELYPSRHIALCL 137 (316)
Q Consensus 80 ~~~~~~~~~~~~~~~t~~~~~~~~~~~l~~~~~~-~~----~~~~~~~ls~-----------------e~~~~yG~te~~ 137 (316)
.+|..|++.++++++|+++++|++++.+...... .. ...+.+-..+ .+.+.||+||++
T Consensus 313 ~~~~~~~~~i~~~~vt~~~~~P~~~~~l~~~~~~~~~~~~l~~lr~~~~gGe~l~~~~~~~~~~~~~~~~~~~yG~TE~~ 392 (628)
T TIGR02316 313 PDPGVWWSIVERYGVRTMFSAPTAIRVLKKQDAAWLRKHDLSSLHWLFLAGEPLDEPTAHWITDGLGKPVIDNYWQTETG 392 (628)
T ss_pred CCHHHHHHHHHHhCCeEEEeCHHHHHHHHhcCCcccccCCccceeEEEEecCCCCHHHHHHHHHHhCCCEEecccccccC
Confidence 5789999999999999999999988765443211 00 0011111111 277899999987
Q ss_pred CCCCCCCceEEEEeeeccCcccccCCCce-EEecCc------------eEEecC------CCcccCCCcC----------
Q psy14342 138 DPYCGLGFALWVLSSVYSGHHSILIPPSE-VEVNPA------------LWLSAV------SQYRVRDTFC---------- 188 (316)
Q Consensus 138 ~~~~~~~~~~~~~~~~~~g~~~~~~~g~~-~i~d~~------------l~v~~~------~gY~~~~~~~---------- 188 (316)
.......+... ......|..|.|+||++ +++|++ |+++|| .|||++++.+
T Consensus 393 ~~~~~~~~~~~-~~~~~~gs~G~p~~g~~v~i~d~~~g~~~~~g~~Gel~v~gp~~~g~~~~~~~~~~~~~~~~~~~~~~ 471 (628)
T TIGR02316 393 WPVLAIMPGLD-LKPVKLGSPGLPMYGYHLRVLDEATGRPCGPNEKGVLTVVPPLPPGCLSTVWGDDARFLKTYWSHFKR 471 (628)
T ss_pred ceeecCCCCCC-cCCCCCCCcccCcCCceEEEEECCCCCCCCCCCcEEEEEecCCCccccccccCChHHHHHhhhhcCCC
Confidence 43322211000 01122234456899999 888752 899987 6788876532
Q ss_pred ----CCCceeeec-Cc---CCcccceeEECCcccChHhHHHHHHHhccccceeEEEeeC-----CcEEEEEEecCCch--
Q psy14342 189 ----SCNGALYQG-AE---RLALDETIMLRGMRYHPIDIENSVMRAHKKIAECAVFTWT-----NLLVVVVELDGNES-- 253 (316)
Q Consensus 189 ----~~d~g~~~~-g~---~GR~dd~i~~~G~~v~p~eIE~~l~~~~p~v~~~~v~~~~-----~~~~~~v~~~~~~~-- 253 (316)
++|.|++++ |. +||.||+||++|+||+|.|||++|.+ ||.|.+|+|+++. +.+++++.+.+...
T Consensus 472 ~~~~TGD~g~~d~dG~l~i~GR~dd~ik~~G~rv~~~eIE~~l~~-~p~V~ea~Vvg~~d~~~g~~~~~~vv~~~~~~~~ 550 (628)
T TIGR02316 472 PLYSSFDWGIRDEDGYTFILGRTDDVINVAGHRLGTREIEESVSS-HPSVAEVAVVGVHDELKGQVAVVFAILKESDSAG 550 (628)
T ss_pred CEEECCceEEEcCCCcEEEEEcCcceEEeCCEEeCHHHHHHHHHh-CCCcceEEEEeeecCCCCeEEEEEEEEcCCcccc
Confidence 226666654 43 99999999999999999999999999 9999999999983 45666666654321
Q ss_pred ---hhcchHHHHHHHHHHhc---CeeecEEEEEcCCCcccCCCchhhHHHHHHHHHcC
Q psy14342 254 ---EALDLVPLVTNAVLEEH---HLIVGVAVVVDPGVVPINSRGEKQRMHLRDGFLAD 305 (316)
Q Consensus 254 ---~~~~l~~~~~~~l~~~~---~~~~~~~~~~~~~~lP~t~~gKi~r~~l~~~~~~~ 305 (316)
+...+.+++++.+.+.. ..| ..+.+++ .||+|++||++|+.|++.+...
T Consensus 551 ~~~~~~~~~~~i~~~~~~~L~~~~~P-~~v~~v~--~lP~t~sGKi~r~~L~~~~~~~ 605 (628)
T TIGR02316 551 DAHDPHAVETGMMDCVVRQLGAVARP-ARVYFVA--ALPKTRSGKLLRRSIQALAEGR 605 (628)
T ss_pred cccchHHHHHHHHHHHHHhcCCCcCC-CEEEEcC--CCCCCCchHHHHHHHHHHHcCC
Confidence 11233444555544433 333 4555555 8999999999999999887643
|
This family contains one of three readily separable clades of proteins in the group of acetate and propionate--CoA ligases. Characterized members of this family act on propionate. From propionyl-CoA, there is a cyclic degradation pathway: it is ligated by PrpC to the TCA cycle intermediate oxaloacetate, acted upon further by PrpD and an aconitase, then cleaved by PrpB to pyruvate and the TCA cycle intermediate succinate. |
| >PRK12476 putative fatty-acid--CoA ligase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-40 Score=320.84 Aligned_cols=306 Identities=22% Similarity=0.276 Sum_probs=222.2
Q ss_pred CeEEEEeccCCCCCceEEEEeHHHHHHHHHHHHHHhc-CCCCCceEEecCCcCChhhhHHHHhhhhcCceeeeeCCcccc
Q psy14342 1 MLAYLDFSVSTTGMLAGIKMSHAAVTSLCRSMKLACE-LYPSRHIALCLDPYCGLGFALWVLSSVYSGHHSILIPPSEVE 79 (316)
Q Consensus 1 ~~a~i~~TSGTTG~PK~V~~t~~~l~~~~~~~~~~~~-~~~~d~~l~~~p~~h~~g~~~~~~~~l~~G~~~v~~~~~~~~ 79 (316)
|+++|+|||||||.||||++||+++..++......++ +.++|+.+.++|++|.+|+.. .+.+++.|+++++..+..+.
T Consensus 194 d~a~i~yTSGTTG~PKgV~~sh~~l~~~~~~~~~~~~~~~~~~~~l~~~Pl~h~~g~~~-~~~~~~~gg~~~~~~~~~~~ 272 (612)
T PRK12476 194 DVSHLQYTSGSTRPPVGVEITHRAVGTNLVQMILSIDLLDRNTHGVSWLPLYHDMGLSM-IGFPAVYGGHSTLMSPTAFV 272 (612)
T ss_pred ceEEEEeCCCCCCCCceEEeeHHHHHHHHHHHHHHhccCCCCceEEEeCCcccccchHH-HHHHHhcCCeEEEECHHHHH
Confidence 5799999999999999999999999888777777777 788899999999999999987 44455566666666554445
Q ss_pred cChHHHHHHHh--ccceeeEEecccchhhHHhhH--H----hhh-hhcccccccc-----------------------cc
Q psy14342 80 VNPALWLSAVS--QYRVRDTFCSYGMLAGIKMSH--A----AVT-SLCRSMKLAC-----------------------EL 127 (316)
Q Consensus 80 ~~~~~~~~~~~--~~~~t~~~~~~~~~~~l~~~~--~----~~~-~~~~~~~ls~-----------------------e~ 127 (316)
.+|..|++.++ ++++++++.+|+++..+.... . ... ...+ +-..+ .+
T Consensus 273 ~~p~~~~~~i~~~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~l~~lr-~~~gg~~~~~~~~~~~~~~~~~~g~~~~~~ 351 (612)
T PRK12476 273 RRPQRWIKALSEGSRTGRVVTAAPNFAYEWAAQRGLPAEGDDIDLSNVV-LIIGSEPVSIDAVTTFNKAFAPYGLPRTAF 351 (612)
T ss_pred HHHHHHHHHHhhhccCCeEEEeCCcHHHHHHHHhcChhhhcCcchhHhe-EEecccCCCHHHHHHHHHHHHhcCCCcccc
Confidence 57899999994 588898888888766543321 0 000 0011 11111 15
Q ss_pred cccccchhccCCCCCCCc----eEEEEee------------------eccCcccccCCCce-EEecCc------------
Q psy14342 128 YPSRHIALCLDPYCGLGF----ALWVLSS------------------VYSGHHSILIPPSE-VEVNPA------------ 172 (316)
Q Consensus 128 ~~~yG~te~~~~~~~~~~----~~~~~~~------------------~~~g~~~~~~~g~~-~i~d~~------------ 172 (316)
++.||+||++.......+ ..+.... ...++.|.++||.+ +++|++
T Consensus 352 ~~~YG~TE~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~G~~~~g~~v~ivd~~~g~~~~~g~~GE 431 (612)
T PRK12476 352 KPSYGIAEATLFVATIAPDAEPSVVYLDREQLGAGRAVRVAADAPNAVAHVSCGQVARSQWAVIVDPDTGAELPDGEVGE 431 (612)
T ss_pred ccccchhhhheeeeccCCCCCceEEEEcHHHhhCCCeeecCCCCCCcceeEeCCCcCCCCEEEEEeCCCCcCCCCCCEEE
Confidence 788999998643221111 0000000 00123355899999 887743
Q ss_pred eEEecC---CCcccCCCcCC-----------------------------CCceeeecCc---CCcccceeEECCcccChH
Q psy14342 173 LWLSAV---SQYRVRDTFCS-----------------------------CNGALYQGAE---RLALDETIMLRGMRYHPI 217 (316)
Q Consensus 173 l~v~~~---~gY~~~~~~~~-----------------------------~d~g~~~~g~---~GR~dd~i~~~G~~v~p~ 217 (316)
|+++|+ .|||++++.+. +|.|++++|. +||.||+||++|++|+|.
T Consensus 432 l~v~g~~v~~GY~~~~~~t~~~f~~~~~~~~~~g~~~~~~~~~~~w~~TGDlg~~~dG~l~i~GR~~d~I~~~G~~I~p~ 511 (612)
T PRK12476 432 IWLHGDNIGRGYWGRPEETERTFGAKLQSRLAEGSHADGAADDGTWLRTGDLGVYLDGELYITGRIADLIVIDGRNHYPQ 511 (612)
T ss_pred EEEcCCcccccccCChHHHHHHHhhhhccccccccccccccCCCCeeeccccceeECCEEEEEeccCcEEEECCcccCHH
Confidence 999999 89999876541 1444444443 899999999999999999
Q ss_pred hHHHHHHHhccccce--eEEEeeC----CcEEEEEEecCCc--hhhcchHHHHHHHHHHhcCeeecEEEEEcCCCcccCC
Q psy14342 218 DIENSVMRAHKKIAE--CAVFTWT----NLLVVVVELDGNE--SEALDLVPLVTNAVLEEHHLIVGVAVVVDPGVVPINS 289 (316)
Q Consensus 218 eIE~~l~~~~p~v~~--~~v~~~~----~~~~~~v~~~~~~--~~~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~lP~t~ 289 (316)
|||++|.+.||.|.+ ++|++.. ++++++++..+.. .+.+++.+++++.+...++.++..+.++..++||+|+
T Consensus 512 eIE~~l~~~~p~V~~~~v~v~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~~~l~~~~~~~p~~v~~v~~~~lP~t~ 591 (612)
T PRK12476 512 DIEATVAEASPMVRRGYVTAFTVPAEDNERLVIVAERAAGTSRADPAPAIDAIRAAVSRRHGLAVADVRLVPAGAIPRTT 591 (612)
T ss_pred HHHHHHHHhcccccCCcEEEEEecCCCcceEEEEEEecCCcccccHHHHHHHHHHHHHHhhCCcceEEEEECCCCcCcCC
Confidence 999999854899999 6667663 4677777766542 3456788999999987777766788888877899999
Q ss_pred CchhhHHHHHHHHHcCCCC
Q psy14342 290 RGEKQRMHLRDGFLADQLD 308 (316)
Q Consensus 290 ~gKi~r~~l~~~~~~~~~~ 308 (316)
+||++|++|++.|.++.++
T Consensus 592 ~GKi~r~~L~~~~~~~~~~ 610 (612)
T PRK12476 592 SGKLARRACRAQYLDGRLG 610 (612)
T ss_pred chHHHHHHHHHHHHcCCCC
Confidence 9999999999999998765
|
|
| >TIGR01217 ac_ac_CoA_syn acetoacetyl-CoA synthase | Back alignment and domain information |
|---|
Probab=100.00 E-value=1e-40 Score=323.34 Aligned_cols=296 Identities=14% Similarity=0.086 Sum_probs=206.9
Q ss_pred CeEEEEeccCCCCCceEEEEeHHHHHH-HHHHHHHHhcCCCCCceEEecCCcCChhhhHHHHhhhhcCceeeeeCCcccc
Q psy14342 1 MLAYLDFSVSTTGMLAGIKMSHAAVTS-LCRSMKLACELYPSRHIALCLDPYCGLGFALWVLSSVYSGHHSILIPPSEVE 79 (316)
Q Consensus 1 ~~a~i~~TSGTTG~PK~V~~t~~~l~~-~~~~~~~~~~~~~~d~~l~~~p~~h~~g~~~~~~~~l~~G~~~v~~~~~~~~ 79 (316)
|+++|+|||||||.||||+++|++++. ........++++++|+++...|+.|..+ . .++.++..|+++++.+.....
T Consensus 265 d~~~ilyTSGTTG~PKgV~~sh~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~-~-~~~~~l~~G~t~vl~~g~~~~ 342 (652)
T TIGR01217 265 HPLWILFSSGTTGLPKCIVHSAGGTLVQHLKEHGLHCDLGPGDRLFYYTTTGWMMW-N-WLVSGLATGATLVLYDGSPGF 342 (652)
T ss_pred CCEEEEEcCCCCCCCCeEEecccHHHHHHHHHHHhccCCCCCcEEEEeCCcchhhh-H-HHHHHHhcCcEEEEECCCCCC
Confidence 589999999999999999999998654 4445556688999999999999988743 2 256899999999998755445
Q ss_pred cChHHHHHHHhccceeeEEecccchhhHHhhHHhh----h-hhccccccccc-------------------ccccccchh
Q psy14342 80 VNPALWLSAVSQYRVRDTFCSYGMLAGIKMSHAAV----T-SLCRSMKLACE-------------------LYPSRHIAL 135 (316)
Q Consensus 80 ~~~~~~~~~~~~~~~t~~~~~~~~~~~l~~~~~~~----~-~~~~~~~ls~e-------------------~~~~yG~te 135 (316)
.++..++++++++++|++..+|.++..+....... . +..+.+-..++ +...||+||
T Consensus 343 ~~~~~~~~~i~~~~vt~~~~~p~~~~~l~~~~~~~~~~~~l~sLr~i~~gGe~l~~~~~~~~~~~~~~~~~~~~~yG~TE 422 (652)
T TIGR01217 343 PATNVLWDIAERTGATLFGTSAKYVMACRKAGVHPARTHDLSALQCVASTGSPLPPDGFRWVYDEIKADVWLASISGGTD 422 (652)
T ss_pred CCchHHHHHHHHhCCeEEecCHHHHHHHHhcCCCccccCChhheeEEEeecCCCCHHHHHHHHHHhCCCceEEeccCHHH
Confidence 57889999999999998755555544332211000 0 00111111111 345699999
Q ss_pred ccCCCCCCCceEEEEeeeccCcccccCCCce-EEecCc----------eEEecC-----CCcccCCCcCC----------
Q psy14342 136 CLDPYCGLGFALWVLSSVYSGHHSILIPPSE-VEVNPA----------LWLSAV-----SQYRVRDTFCS---------- 189 (316)
Q Consensus 136 ~~~~~~~~~~~~~~~~~~~~g~~~~~~~g~~-~i~d~~----------l~v~~~-----~gY~~~~~~~~---------- 189 (316)
++.......+. .....|..+.+.+|++ +++|++ |+++|| .|||++++.+.
T Consensus 423 ~~~~~~~~~~~----~~~~~g~~g~p~~g~~v~ivd~~g~~~~g~~GEl~v~gp~p~~~~gy~~~~~~t~~~~~~~~~~~ 498 (652)
T TIGR01217 423 ICSCFAGANPT----LPVHIGEIQAPGLGTAVQSWDPEGKPVTGEVGELVCTNPMPSMPIRFWNDPDGSKYRDAYFDTYP 498 (652)
T ss_pred HhccccCCCCC----CCCcCCccCCCcCCCceEEECCCCCCCCCCccEEEEecCCCccccceeCCCccchhHHhhhcCCC
Confidence 75433221110 1112233344788998 887754 899986 79999986432
Q ss_pred -----CCceeeec-Cc---CCcccceeEECCcccChHhHHHHHHHhccccceeEEEeeC-----CcEEEEEEecCCchhh
Q psy14342 190 -----CNGALYQG-AE---RLALDETIMLRGMRYHPIDIENSVMRAHKKIAECAVFTWT-----NLLVVVVELDGNESEA 255 (316)
Q Consensus 190 -----~d~g~~~~-g~---~GR~dd~i~~~G~~v~p~eIE~~l~~~~p~v~~~~v~~~~-----~~~~~~v~~~~~~~~~ 255 (316)
+|.|++++ |. +||.||+||++|+||+|.|||++|.+ ||.|.+|+|+++. +.+++++++.+.....
T Consensus 499 g~~~tGDlg~~d~dG~l~i~GR~dd~I~~~G~ri~p~EIE~~l~~-~p~V~eaavvg~~~~~~ge~~~afVv~~~~~~~~ 577 (652)
T TIGR01217 499 GVWRHGDWITLTPRGGIVIHGRSDSTLNPQGVRMGSAEIYNAVER-LDEVRESLCIGQEQPDGGYRVVLFVHLAPGATLD 577 (652)
T ss_pred CEEEcCCcEEECCCCcEEEEecccCeEecCCEEcCHHHHHHHHHh-CCCcceEEEEeeecCCCCEEEEEEEEECCCCCCC
Confidence 36666654 43 99999999999999999999999999 9999999999983 4677777776543323
Q ss_pred cchHHHHHHHHHHh---cCeeecEEEEEcCCCcccCCCchhhHHHHHHHHHcCC
Q psy14342 256 LDLVPLVTNAVLEE---HHLIVGVAVVVDPGVVPINSRGEKQRMHLRDGFLADQ 306 (316)
Q Consensus 256 ~~l~~~~~~~l~~~---~~~~~~~~~~~~~~~lP~t~~gKi~r~~l~~~~~~~~ 306 (316)
+++.+++++.+.+. +..| ..+.+++ .||+|++||++|+.|++.+...+
T Consensus 578 ~~~~~~l~~~~~~~l~~~~~P-~~i~~v~--~lP~T~sGKi~r~~Lr~~~~~~~ 628 (652)
T TIGR01217 578 DALLDRIKRTIRAGLSPRHVP-DEIIEVP--GIPHTLTGKRVEVAVKRVLQGTP 628 (652)
T ss_pred HHHHHHHHHHHHhhCCCCcCC-CEEEECC--CCCCCCCccChHHHHHHHHcCCC
Confidence 34444555554433 3333 4556555 89999999999999999876543
|
This enzyme catalyzes the first step of the mevalonate pathway of IPP biosynthesis. Most bacteria do not use this pathway, but rather the deoxyxylulose pathway. |
| >TIGR02188 Ac_CoA_lig_AcsA acetate--CoA ligase | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-40 Score=322.39 Aligned_cols=300 Identities=14% Similarity=0.083 Sum_probs=217.0
Q ss_pred CeEEEEeccCCCCCceEEEEeHHHHHHHH-HHHHHHhcCCCCCceEEecCCcCChhhhHHHHhhhhcCceeeeeCCcccc
Q psy14342 1 MLAYLDFSVSTTGMLAGIKMSHAAVTSLC-RSMKLACELYPSRHIALCLDPYCGLGFALWVLSSVYSGHHSILIPPSEVE 79 (316)
Q Consensus 1 ~~a~i~~TSGTTG~PK~V~~t~~~l~~~~-~~~~~~~~~~~~d~~l~~~p~~h~~g~~~~~~~~l~~G~~~v~~~~~~~~ 79 (316)
|+++|+|||||||.||||+++|+++..+. ......+++.++|+++...|+.|..+..+.++.++..|+++++.+.....
T Consensus 237 ~~a~il~TSGTTG~PKgV~~s~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~g~~~~~~~~l~~G~t~vl~~~~~~~ 316 (625)
T TIGR02188 237 DPLFILYTSGSTGKPKGVLHTTGGYLLYAAMTMKYVFDIKDGDIFWCTADVGWITGHSYIVYGPLANGATTVMFEGTPTY 316 (625)
T ss_pred CceEEEecCCCCCCCCeEEECccHhHHHHHHHHHhccCCCCCcEEEECCCchhhhccHHHHHHHHHcCCeEEEECCCCCC
Confidence 57999999999999999999999876543 34455678899999999999999988877789999999999998755445
Q ss_pred cChHHHHHHHhccceeeEEecccchhhHHhhHHhhh-----hhcccccccc--------------------cccccccch
Q psy14342 80 VNPALWLSAVSQYRVRDTFCSYGMLAGIKMSHAAVT-----SLCRSMKLAC--------------------ELYPSRHIA 134 (316)
Q Consensus 80 ~~~~~~~~~~~~~~~t~~~~~~~~~~~l~~~~~~~~-----~~~~~~~ls~--------------------e~~~~yG~t 134 (316)
.+|..+++.++++++|+++.+|+++..+........ ...+.+-..+ .+++.||+|
T Consensus 317 ~~~~~~~~~i~~~~vt~~~~~P~~~~~l~~~~~~~~~~~~l~~lr~i~~~G~~l~~~~~~~~~~~~~~~~~~i~~~yG~T 396 (625)
T TIGR02188 317 PDPGRFWEIIEKHKVTIFYTAPTAIRALMRLGDEWVKKHDLSSLRLLGSVGEPINPEAWMWYYKVVGKERCPIVDTWWQT 396 (625)
T ss_pred CChhHHHHHHHHhCCeEEEeCHHHHHHHHhcCCcccccCCccceeEEEEecCCCCHHHHHHHHHHcCCCCCceEeccccc
Confidence 578999999999999999999998876654322110 0001111111 166789999
Q ss_pred hccCCCCCCCceEEEEeeeccCcccccCCCce-EEecCc------------eEEecC-----CCcccCCCcC--------
Q psy14342 135 LCLDPYCGLGFALWVLSSVYSGHHSILIPPSE-VEVNPA------------LWLSAV-----SQYRVRDTFC-------- 188 (316)
Q Consensus 135 e~~~~~~~~~~~~~~~~~~~~g~~~~~~~g~~-~i~d~~------------l~v~~~-----~gY~~~~~~~-------- 188 (316)
|++.......+.. .....|..+.|++|++ +++|++ |+++++ .|||++++.+
T Consensus 397 E~~~~~~~~~~~~---~~~~~~~~G~p~~g~~~~i~d~~g~~~~~~g~~GeL~v~~p~p~~~~gy~~~~~~~~~~~~~~~ 473 (625)
T TIGR02188 397 ETGGIMITPLPGA---TPTKPGSATLPFFGIEPAVVDEEGNPVEGPGEGGYLVIKQPWPGMLRTIYGDHERFVDTYFSPF 473 (625)
T ss_pred ccCCceeecCCCC---CCcCCCcccCCcCCceEEEECCCCCCCCCCCCeEEEEEccCCCcccccccCChHHHHHHHhccC
Confidence 9875432221110 0122344556899999 887642 889984 8999987642
Q ss_pred -----CCCceeeec-Cc---CCcccceeEECCcccChHhHHHHHHHhccccceeEEEeeC-----CcEEEEEEecCCchh
Q psy14342 189 -----SCNGALYQG-AE---RLALDETIMLRGMRYHPIDIENSVMRAHKKIAECAVFTWT-----NLLVVVVELDGNESE 254 (316)
Q Consensus 189 -----~~d~g~~~~-g~---~GR~dd~i~~~G~~v~p~eIE~~l~~~~p~v~~~~v~~~~-----~~~~~~v~~~~~~~~ 254 (316)
++|.|++++ |. +||.||+||++|++|+|.|||++|.+ ||.|.+|+|++.. +.+++++++.+....
T Consensus 474 ~g~~~TGDl~~~d~dG~l~i~GR~dd~i~~~G~ri~p~eIE~~l~~-~p~V~e~~vvg~~~~~~g~~~~a~vv~~~~~~~ 552 (625)
T TIGR02188 474 PGYYFTGDGARRDKDGYIWITGRVDDVINVSGHRLGTAEIESALVS-HPAVAEAAVVGIPDDIKGQAIYAFVTLKDGYEP 552 (625)
T ss_pred CCEEECCceEEEcCCCcEEEEecccCEEEeCCEEECHHHHHHHHHh-CCCcceEEEEeeEcCCCCeEEEEEEEeCCCCCC
Confidence 226666654 43 99999999999999999999999999 9999999999873 467777777665433
Q ss_pred hcchHHHHHHHHHHhcCeeecEEEEEcCCCcccCCCchhhHHHHHHHHHc
Q psy14342 255 ALDLVPLVTNAVLEEHHLIVGVAVVVDPGVVPINSRGEKQRMHLRDGFLA 304 (316)
Q Consensus 255 ~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~lP~t~~gKi~r~~l~~~~~~ 304 (316)
.+++.+++++.+.+.......+..++.+++||+|++||++|+.|++.+..
T Consensus 553 ~~~~~~~l~~~~~~~l~~~~~P~~i~~v~~lP~t~sGKi~r~~l~~~~~~ 602 (625)
T TIGR02188 553 DDELRKELRKHVRKEIGPIAKPDKIRFVPGLPKTRSGKIMRRLLRKIAAG 602 (625)
T ss_pred CHHHHHHHHHHHHhhcCCCccCcEEEECCCCCCCCCccchHHHHHHHHcC
Confidence 33345555555554433322223333344899999999999999988764
|
This model describes acetate-CoA ligase (EC 6.2.1.1), also called acetyl-CoA synthetase and acetyl-activating enzyme. It catalyzes the reaction ATP + acetate + CoA = AMP + diphosphate + acetyl-CoA and belongs to the family of AMP-binding enzymes described by Pfam model pfam00501. |
| >PRK06334 long chain fatty acid--[acyl-carrier-protein] ligase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.5e-40 Score=314.35 Aligned_cols=291 Identities=13% Similarity=0.055 Sum_probs=209.6
Q ss_pred CeEEEEeccCCCCCceEEEEeHHHHHHHHHHHHHHhcCCCCCceEEecCCcCChhhhHHHHhhhhcCceeeeeCCccccc
Q psy14342 1 MLAYLDFSVSTTGMLAGIKMSHAAVTSLCRSMKLACELYPSRHIALCLDPYCGLGFALWVLSSVYSGHHSILIPPSEVEV 80 (316)
Q Consensus 1 ~~a~i~~TSGTTG~PK~V~~t~~~l~~~~~~~~~~~~~~~~d~~l~~~p~~h~~g~~~~~~~~l~~G~~~v~~~~~~~~~ 80 (316)
|+++|+|||||||.||+|.+||+++..+.......+++.++|+++.++|++|.+|+...++.++..|+++++.... .
T Consensus 184 d~a~i~~TSGTTG~PKgV~~th~~l~~~~~~~~~~~~~~~~d~~l~~~p~~h~~g~~~~~~~~l~~G~~vv~~~~~---~ 260 (539)
T PRK06334 184 DVAVILFTSGTEKLPKGVPLTHANLLANQRACLKFFSPKEDDVMMSFLPPFHAYGFNSCTLFPLLSGVPVVFAYNP---L 260 (539)
T ss_pred CEEEEEECCCCCCCCCEEEEcHHHHHHHHHHHHHhcCCCCCceEEEecchHhhhhhHHHHHHHHHcCCeEEEecCC---C
Confidence 5899999999999999999999999988887778888999999999999999999987788999999999886422 2
Q ss_pred ChHHHHHHHhccceeeEEecccchhhHHhhHHhhh---hhcccccccc------------------cccccccchhccCC
Q psy14342 81 NPALWLSAVSQYRVRDTFCSYGMLAGIKMSHAAVT---SLCRSMKLAC------------------ELYPSRHIALCLDP 139 (316)
Q Consensus 81 ~~~~~~~~~~~~~~t~~~~~~~~~~~l~~~~~~~~---~~~~~~~ls~------------------e~~~~yG~te~~~~ 139 (316)
+|..+++.++++++|+++.+|+++..+........ ...+.+-.++ .+++.||+||++..
T Consensus 261 ~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~lr~i~~gG~~l~~~~~~~~~~~~~~~~i~~~YG~TE~~~~ 340 (539)
T PRK06334 261 YPKKIVEMIDEAKVTFLGSTPVFFDYILKTAKKQESCLPSLRFVVIGGDAFKDSLYQEALKTFPHIQLRQGYGTTECSPV 340 (539)
T ss_pred CHHHHHHHHHHhCCcEEEecHHHHHHHHHhhhhcccccccccEEEECCccCCHHHHHHHHHHCCCCeEEecccccccCce
Confidence 68899999999999999999998876554332110 0011111111 27789999998643
Q ss_pred CCCCCceEEEEeeeccCcccccCCCce-EEecCc------------eEEecC---CCcccCCCcCC------------CC
Q psy14342 140 YCGLGFALWVLSSVYSGHHSILIPPSE-VEVNPA------------LWLSAV---SQYRVRDTFCS------------CN 191 (316)
Q Consensus 140 ~~~~~~~~~~~~~~~~g~~~~~~~g~~-~i~d~~------------l~v~~~---~gY~~~~~~~~------------~d 191 (316)
....... .....++.|.+++|++ +++|++ |+++|+ .|||++++.+. +|
T Consensus 341 ~~~~~~~----~~~~~~~vG~p~~g~~v~i~d~~~~~~~~~g~~Gel~v~g~~~~~GY~~~~~~~~~~~~~~~~w~~TGD 416 (539)
T PRK06334 341 ITINTVN----SPKHESCVGMPIRGMDVLIVSEETKVPVSSGETGLVLTRGTSLFSGYLGEDFGQGFVELGGETWYVTGD 416 (539)
T ss_pred EEeccCC----CCCCCCcCceecCCCEEEEEcCCCCccCCCCceEEEEEecCcccccccCCcccccceeeCCceeEECCC
Confidence 3222110 0011224456899999 887642 999999 89999876432 24
Q ss_pred ceeeec-Cc---CCcccceeEECCcccChHhHHHHHHHhccccce------eEEEeeCC-cEEEEEEecCCchhhcchHH
Q psy14342 192 GALYQG-AE---RLALDETIMLRGMRYHPIDIENSVMRAHKKIAE------CAVFTWTN-LLVVVVELDGNESEALDLVP 260 (316)
Q Consensus 192 ~g~~~~-g~---~GR~dd~i~~~G~~v~p~eIE~~l~~~~p~v~~------~~v~~~~~-~~~~~v~~~~~~~~~~~l~~ 260 (316)
.|++++ |. .||.||+||++|++|+|.|||++|.+ ||+|.+ ++|++..+ ...+++.+... .+.+++.+
T Consensus 417 ~g~~d~~G~l~~~GR~~d~ik~~G~~v~p~eIE~~l~~-~~~v~~~~~~~~~~v~~~~~~~~~~~~~~~~~-~~~~~~~~ 494 (539)
T PRK06334 417 LGYVDRHGELFLKGRLSRFVKIGAEMVSLEALESILME-GFGQNAADHAGPLVVCGLPGEKVRLCLFTTFP-TSISEVND 494 (539)
T ss_pred EEEECCCCeEEEEeccCCeEEECCEEECHHHHHHHHHH-ccCCccccccCceEEEcCCCCceEEEEEEecc-CChHHHHH
Confidence 555543 32 99999999999999999999999999 999987 77777743 32222222221 23345555
Q ss_pred HHHHHHHHhcCeeecEEEEEcCCCcccCCCchhhHHHHHHHHH
Q psy14342 261 LVTNAVLEEHHLIVGVAVVVDPGVVPINSRGEKQRMHLRDGFL 303 (316)
Q Consensus 261 ~~~~~l~~~~~~~~~~~~~~~~~~lP~t~~gKi~r~~l~~~~~ 303 (316)
.+++.....+..| ..+.+++ +||+|++||++|++|++...
T Consensus 495 ~l~~~~~~~~~~P-~~i~~v~--~lP~t~~GKi~r~~L~~~~~ 534 (539)
T PRK06334 495 ILKNSKTSSILKI-SYHHQVE--SIPMLGTGKPDYCSLNALAK 534 (539)
T ss_pred HHHhcCCcccccc-hheeeec--ccccccCCcccHHHHHHHHH
Confidence 5555422233333 4556665 89999999999999998754
|
|
| >PRK03584 acetoacetyl-CoA synthetase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.9e-40 Score=319.94 Aligned_cols=299 Identities=14% Similarity=0.058 Sum_probs=213.9
Q ss_pred CeEEEEeccCCCCCceEEEEeHHHHHH-HHHHHHHHhcCCCCCceEEecCCcCChhhhHHHHhhhhcCceeeeeCCcccc
Q psy14342 1 MLAYLDFSVSTTGMLAGIKMSHAAVTS-LCRSMKLACELYPSRHIALCLDPYCGLGFALWVLSSVYSGHHSILIPPSEVE 79 (316)
Q Consensus 1 ~~a~i~~TSGTTG~PK~V~~t~~~l~~-~~~~~~~~~~~~~~d~~l~~~p~~h~~g~~~~~~~~l~~G~~~v~~~~~~~~ 79 (316)
|+++|+|||||||.||||++||++++. ........+++.++|+++...++.|..+. .++.++..|+++++.+.....
T Consensus 264 ~~a~ilyTSGTTG~PKgV~~sh~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~--~~~~~L~~G~t~vl~~~~~~~ 341 (655)
T PRK03584 264 HPLWILYSSGTTGLPKCIVHGHGGILLEHLKELGLHCDLGPGDRFFWYTTCGWMMWN--WLVSGLLVGATLVLYDGSPFY 341 (655)
T ss_pred CcEEEEecCCCCCCCceEEECccHHHHHHHHHHHHhcCCCCCCEEEEcCCchHHhHH--HHHHHHHcCCEEEEeCCCCCC
Confidence 579999999999999999999998764 35556667889999999988888876432 367899999999998765545
Q ss_pred cChHHHHHHHhccceeeEEecccchhhHHhhHHhh----h-hhcccccccc-------------------cccccccchh
Q psy14342 80 VNPALWLSAVSQYRVRDTFCSYGMLAGIKMSHAAV----T-SLCRSMKLAC-------------------ELYPSRHIAL 135 (316)
Q Consensus 80 ~~~~~~~~~~~~~~~t~~~~~~~~~~~l~~~~~~~----~-~~~~~~~ls~-------------------e~~~~yG~te 135 (316)
.+|..++++++++++|+++.+|+++..+....... . ...+.+-..+ .+.+.||+||
T Consensus 342 ~~~~~~~~~i~~~~vt~~~~~P~~~~~l~~~~~~~~~~~~l~sLr~i~~~Ge~l~~~~~~~~~~~~~~~~~~~~~yG~TE 421 (655)
T PRK03584 342 PDPNVLWDLAAEEGVTVFGTSAKYLDACEKAGLVPGETHDLSALRTIGSTGSPLPPEGFDWVYEHVKADVWLASISGGTD 421 (655)
T ss_pred CCHHHHHHHHHHHCCEEEEcCHHHHHHHHhcCCCccccCChhheEEEEEecCCCCHHHHHHHHHHhCCCceEEeccChHh
Confidence 67899999999999999988888876554321100 0 0011111111 1566899999
Q ss_pred ccCCCCCCCceEEEEeeeccCcccccCCCce-EEecCc----------eEEecC-----CCcccCCCcCC----------
Q psy14342 136 CLDPYCGLGFALWVLSSVYSGHHSILIPPSE-VEVNPA----------LWLSAV-----SQYRVRDTFCS---------- 189 (316)
Q Consensus 136 ~~~~~~~~~~~~~~~~~~~~g~~~~~~~g~~-~i~d~~----------l~v~~~-----~gY~~~~~~~~---------- 189 (316)
++.......+. .....|..+.+++|++ +++|++ |+++|+ .|||++++.+.
T Consensus 422 ~~~~~~~~~~~----~~~~~g~~g~p~~g~~~~ivd~~g~~~~g~~GeL~v~gp~p~~~~gy~~~~~~~~~~~~~~~~~~ 497 (655)
T PRK03584 422 ICSCFVGGNPL----LPVYRGEIQCRGLGMAVEAWDEDGRPVVGEVGELVCTKPFPSMPLGFWNDPDGSRYRDAYFDTFP 497 (655)
T ss_pred hhcccccCCCC----CCcCCCccCCCcCCceeEEECCCCCCCCCCceEEEEccCCCCCcceeeCCCccchHHHhhhccCC
Confidence 86433211110 0112233445789999 888764 899985 79999876432
Q ss_pred -----CCceeeec-Cc---CCcccceeEECCcccChHhHHHHHHHhccccceeEEEeeC-----CcEEEEEEecCCchhh
Q psy14342 190 -----CNGALYQG-AE---RLALDETIMLRGMRYHPIDIENSVMRAHKKIAECAVFTWT-----NLLVVVVELDGNESEA 255 (316)
Q Consensus 190 -----~d~g~~~~-g~---~GR~dd~i~~~G~~v~p~eIE~~l~~~~p~v~~~~v~~~~-----~~~~~~v~~~~~~~~~ 255 (316)
+|.|++++ |. +||.||+||++|++|+|.|||++|.+ ||.|.+|+|++.. +.+++++++.+.....
T Consensus 498 g~~~TGDl~~~d~dG~l~i~GR~dd~Ik~~G~rI~p~EIE~~l~~-~p~V~ea~vvg~~~~~~g~~~~a~vv~~~~~~~~ 576 (655)
T PRK03584 498 GVWRHGDWIEITEHGGVVIYGRSDATLNRGGVRIGTAEIYRQVEA-LPEVLDSLVIGQEWPDGDVRMPLFVVLAEGVTLD 576 (655)
T ss_pred CEeecCCeEEECCCCeEEEEeeccCeeecCcEEECHHHHHHHHHh-CCCcceEEEEeeEcCCCCEEEEEEEEECCCCCCc
Confidence 36666654 43 99999999999999999999999999 9999999999983 4677777776543323
Q ss_pred cchHHHHHHHHHHhcCee--ecEEEEEcCCCcccCCCchhhHHHHHHHHHcCCCC
Q psy14342 256 LDLVPLVTNAVLEEHHLI--VGVAVVVDPGVVPINSRGEKQRMHLRDGFLADQLD 308 (316)
Q Consensus 256 ~~l~~~~~~~l~~~~~~~--~~~~~~~~~~~lP~t~~gKi~r~~l~~~~~~~~~~ 308 (316)
+++.+.+++.+.+..... +..+.++ ++||+|++||++|++|++.+......
T Consensus 577 ~~~~~~l~~~~~~~L~~~~~P~~i~~v--~~lP~t~sGKi~r~~lr~~~~~~~~~ 629 (655)
T PRK03584 577 DALRARIRTTIRTNLSPRHVPDKIIAV--PDIPRTLSGKKVELPVKKLLHGRPVK 629 (655)
T ss_pred HHHHHHHHHHHHhhCCCCcCCCEEEEC--CCCCCCCCccchHHHHHHHHcCCCCC
Confidence 334445555554433222 2345555 48999999999999999998866555
|
|
| >KOG1175|consensus | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.7e-40 Score=305.77 Aligned_cols=299 Identities=15% Similarity=0.118 Sum_probs=237.2
Q ss_pred CeEEEEeccCCCCCceEEEEeHH-HHHHHHHHHHHHhcCCCCCceEEecCCcCChhhhHHHHhhhhcCceeeeeCCcccc
Q psy14342 1 MLAYLDFSVSTTGMLAGIKMSHA-AVTSLCRSMKLACELYPSRHIALCLDPYCGLGFALWVLSSVYSGHHSILIPPSEVE 79 (316)
Q Consensus 1 ~~a~i~~TSGTTG~PK~V~~t~~-~l~~~~~~~~~~~~~~~~d~~l~~~p~~h~~g~~~~~~~~l~~G~~~v~~~~~~~~ 79 (316)
||.+|+|||||||.||++.|++. .++..+.....++++.++|+++....+.|+.|.++..+.+|..|+++++.+..++
T Consensus 240 dpl~IlfTSGtTg~PK~v~ht~~g~ll~~~~~~~~~~d~q~~dv~~~~~d~GWi~g~~~~~~gpl~~Ga~~vl~~g~p~- 318 (626)
T KOG1175|consen 240 DPLFILFTSGTTGKPKGVIHTTGGYLLGAALTSRYHFDLQPSDVLWCASDLGWITGHSYVLYGPLLNGATVVLYEGPPF- 318 (626)
T ss_pred CceEEEecCCCCCCCCceeeccCcchHHHhhhcceeccCCCcceEEEecccCeeeccchhhhhhhhcCcEEEEEcCCCC-
Confidence 68999999999999999999997 5777778888889999999999999999999999988999999999999987765
Q ss_pred cChHHHHHHHhccceeeEEecccchhhHHhhHHhhhhh-----ccccccccc------------------ccccccchhc
Q psy14342 80 VNPALWLSAVSQYRVRDTFCSYGMLAGIKMSHAAVTSL-----CRSMKLACE------------------LYPSRHIALC 136 (316)
Q Consensus 80 ~~~~~~~~~~~~~~~t~~~~~~~~~~~l~~~~~~~~~~-----~~~~~ls~e------------------~~~~yG~te~ 136 (316)
+|.++++++.++++|+++..|+.++.+.+........ .+.+--.+| +.+.||+||+
T Consensus 319 -~~~~~~~~v~k~~it~l~t~pt~~r~l~~~~~~~~~~~~~~sLk~~~S~Gepi~~~~~ew~~~~~~~~pv~e~~~qtEt 397 (626)
T KOG1175|consen 319 -DPGRIWKILDKYKVTVLYTAPTAYRLLRRLGQEDVTSYSLKSLRTCGSVGEPINPEAWEWWKRVTGLDPIYETYGQTET 397 (626)
T ss_pred -ChhhhhhhHhhcceEEEEeccHHHHHHHHhccccccccccceEEEEeecCccCCcchHHHHHHhcCccchhhceeeecc
Confidence 8899999999999999999999988665544332110 111111111 6889999999
Q ss_pred cCCCCCCCceEEEEeeeccCcccccCCCce-EEecCc------------eEEecC------CCcccCCCcCCC-------
Q psy14342 137 LDPYCGLGFALWVLSSVYSGHHSILIPPSE-VEVNPA------------LWLSAV------SQYRVRDTFCSC------- 190 (316)
Q Consensus 137 ~~~~~~~~~~~~~~~~~~~g~~~~~~~g~~-~i~d~~------------l~v~~~------~gY~~~~~~~~~------- 190 (316)
+.......+-. .....|..+.+.+|.+ .++|++ |.++.+ .+||+|++....
T Consensus 398 G~~~i~~~~g~---~p~~pg~~~~p~~g~~v~i~de~g~~~~~~~~~G~l~~~~~~P~~~~r~~~~n~erf~~~yf~k~p 474 (626)
T KOG1175|consen 398 GGICITPKPGK---LPIKPGSAGKPFPGYDVQILDENGNELPPSTGNGELRLKPPWPPGMFRTLWGNHERFRAAYFKKFP 474 (626)
T ss_pred CceeeeccCCC---CCcCccccCCCCCCcceEEECCCCCCcCCCCceeEEEEeCCCCccccccccCCHHHhhhhhcccCC
Confidence 87544333210 0244455556889999 888775 666666 689999773222
Q ss_pred ------Cceeeec-Cc---CCcccceeEECCcccChHhHHHHHHHhccccceeEEEee-----CCcEEEEEEecCCchhh
Q psy14342 191 ------NGALYQG-AE---RLALDETIMLRGMRYHPIDIENSVMRAHKKIAECAVFTW-----TNLLVVVVELDGNESEA 255 (316)
Q Consensus 191 ------d~g~~~~-g~---~GR~dd~i~~~G~~v~p~eIE~~l~~~~p~v~~~~v~~~-----~~~~~~~v~~~~~~~~~ 255 (316)
|.++.+. |+ +||.||+||++|+++++.|||++|.+ ||.|.|++||+. +|.+.+++.++++..+.
T Consensus 475 g~y~tGD~~~rd~dGY~~i~GR~DDviNvsGhRigtaEIE~al~~-hp~VaEsAvVg~p~~~~ge~v~aFvvl~~g~~~~ 553 (626)
T KOG1175|consen 475 GYYFTGDGGRRDEDGYYWILGRVDDVINVSGHRIGTAEIESALVE-HPAVAESAVVGSPDPIKGEVVLAFVVLKSGSHDP 553 (626)
T ss_pred ceEEecCceEEcCCceEEEEecccccccccceeecHHHHHHHHhh-CcchhheeeecCCCCCCCeEEEEEEEEcCCCCCh
Confidence 4555543 33 99999999999999999999999999 999999999999 45788889999988888
Q ss_pred cchHHHHHHHHHHhcCeeecEEEEEcCCCcccCCCchhhHHHHHHHHHcC
Q psy14342 256 LDLVPLVTNAVLEEHHLIVGVAVVVDPGVVPINSRGEKQRMHLRDGFLAD 305 (316)
Q Consensus 256 ~~l~~~~~~~l~~~~~~~~~~~~~~~~~~lP~t~~gKi~r~~l~~~~~~~ 305 (316)
++|.++|+.++++..++...+-.+..++.||+|.+||+.|+.||++....
T Consensus 554 ~~L~kel~~~VR~~igp~a~P~~I~~v~~LPkTrSGKimRr~lrki~~g~ 603 (626)
T KOG1175|consen 554 EQLTKELVKHVRSVIGPYAVPRLIVFVPGLPKTRSGKIMRRALRKIASGK 603 (626)
T ss_pred HHHHHHHHHHHHhhcCcccccceeEecCCCCccccchhHHHHHHHHhccC
Confidence 89999999999987776444444444459999999999999999887764
|
|
| >PRK00174 acetyl-CoA synthetase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.2e-40 Score=317.21 Aligned_cols=299 Identities=15% Similarity=0.109 Sum_probs=216.1
Q ss_pred CeEEEEeccCCCCCceEEEEeHHHHHHHH-HHHHHHhcCCCCCceEEecCCcCChhhhHHHHhhhhcCceeeeeCCcccc
Q psy14342 1 MLAYLDFSVSTTGMLAGIKMSHAAVTSLC-RSMKLACELYPSRHIALCLDPYCGLGFALWVLSSVYSGHHSILIPPSEVE 79 (316)
Q Consensus 1 ~~a~i~~TSGTTG~PK~V~~t~~~l~~~~-~~~~~~~~~~~~d~~l~~~p~~h~~g~~~~~~~~l~~G~~~v~~~~~~~~ 79 (316)
|+++|+|||||||.||||+++|+++.... ......+++.++|+++...|++|..++.+.++.++..|+++++.+.....
T Consensus 246 d~a~i~~TSGTTG~PKgV~~s~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~l~~G~~~v~~~~~~~~ 325 (637)
T PRK00174 246 DPLFILYTSGSTGKPKGVLHTTGGYLVYAAMTMKYVFDYKDGDVYWCTADVGWVTGHSYIVYGPLANGATTLMFEGVPNY 325 (637)
T ss_pred CcEEEEECCCCCCCCceEEeCcchhHHHHHHHHHhccCCCCCcEEEEcCCchHhhhhHHHHHHHHHcCCEEEEECCCCCC
Confidence 57999999999999999999999986543 34455678889999999999999999877789999999999998654334
Q ss_pred cChHHHHHHHhccceeeEEecccchhhHHhhHHhhh-----hhcccccccc--------------------cccccccch
Q psy14342 80 VNPALWLSAVSQYRVRDTFCSYGMLAGIKMSHAAVT-----SLCRSMKLAC--------------------ELYPSRHIA 134 (316)
Q Consensus 80 ~~~~~~~~~~~~~~~t~~~~~~~~~~~l~~~~~~~~-----~~~~~~~ls~--------------------e~~~~yG~t 134 (316)
.++..+++.++++++++++.+|+++..+........ ...+.+-..+ .+++.||+|
T Consensus 326 ~~~~~~~~~i~~~~vt~~~~~P~~~~~l~~~~~~~~~~~~~~~lr~i~~~Ge~l~~~~~~~~~~~~~~~~~~i~~~YG~T 405 (637)
T PRK00174 326 PDPGRFWEVIDKHKVTIFYTAPTAIRALMKEGDEHPKKYDLSSLRLLGSVGEPINPEAWEWYYKVVGGERCPIVDTWWQT 405 (637)
T ss_pred CChHHHHHHHHhcCCeEEeecHHHHHHHHhcCCcccccCCccceeEEEEeCCCCCHHHHHHHHHHhCCCCCceEeccccc
Confidence 578899999999999999999998876544321100 0011111111 267889999
Q ss_pred hccCCCCCCCceEEEEeeeccCcccccCCCce-EEecCc-----------eEEec--C---CCcccCCCcC---------
Q psy14342 135 LCLDPYCGLGFALWVLSSVYSGHHSILIPPSE-VEVNPA-----------LWLSA--V---SQYRVRDTFC--------- 188 (316)
Q Consensus 135 e~~~~~~~~~~~~~~~~~~~~g~~~~~~~g~~-~i~d~~-----------l~v~~--~---~gY~~~~~~~--------- 188 (316)
|++.......+.. .....++.+.|++|++ +++|++ |+++| | .|||++++.+
T Consensus 406 E~~~~~~~~~~~~---~~~~~~~vG~p~~g~~~~i~d~~g~~~~~g~~Gel~v~g~~p~~~~gy~~~~~~~~~~~~~~~~ 482 (637)
T PRK00174 406 ETGGIMITPLPGA---TPLKPGSATRPLPGIQPAVVDEEGNPLEGGEGGNLVIKDPWPGMMRTIYGDHERFVKTYFSTFK 482 (637)
T ss_pred ccCCceEecCCCC---CCcCCCcccCCCCCceEEEECCCCCCCCCCCcEEEEEcCCCCcccccccCCHHHHHHhhhcCCC
Confidence 9875332111100 0112234556899999 888764 89998 3 8999987643
Q ss_pred ----CCCceeeec-Cc---CCcccceeEECCcccChHhHHHHHHHhccccceeEEEeeC-----CcEEEEEEecCCchhh
Q psy14342 189 ----SCNGALYQG-AE---RLALDETIMLRGMRYHPIDIENSVMRAHKKIAECAVFTWT-----NLLVVVVELDGNESEA 255 (316)
Q Consensus 189 ----~~d~g~~~~-g~---~GR~dd~i~~~G~~v~p~eIE~~l~~~~p~v~~~~v~~~~-----~~~~~~v~~~~~~~~~ 255 (316)
++|.|++++ |. +||.||+||++|++|+|.|||++|.+ ||.|.+|+|++.. +.+++++++.+.....
T Consensus 483 g~~~TGDl~~~d~dG~l~~~GR~dd~ik~~G~~v~p~eIE~~l~~-~~~V~~~~Vvg~~~~~~g~~~~a~vv~~~~~~~~ 561 (637)
T PRK00174 483 GMYFTGDGARRDEDGYYWITGRVDDVLNVSGHRLGTAEIESALVA-HPKVAEAAVVGRPDDIKGQGIYAFVTLKGGEEPS 561 (637)
T ss_pred CEEECCceEEEcCCCcEEEEEecccEEEeCCEEECHHHHHHHHHh-CCCcceEEEEeeEcCCCCeEEEEEEEECCCCCCC
Confidence 225555543 43 99999999999999999999999999 9999999999873 4677777776544322
Q ss_pred cchHHHHHHHHHHhcCe--eecEEEEEcCCCcccCCCchhhHHHHHHHHHcC
Q psy14342 256 LDLVPLVTNAVLEEHHL--IVGVAVVVDPGVVPINSRGEKQRMHLRDGFLAD 305 (316)
Q Consensus 256 ~~l~~~~~~~l~~~~~~--~~~~~~~~~~~~lP~t~~gKi~r~~l~~~~~~~ 305 (316)
+++.+.+++.+.+.... .+..+.++ ++||+|++||++|++|++.+...
T Consensus 562 ~~~~~~l~~~l~~~l~~~~~P~~i~~v--~~lP~t~~GKi~R~~L~~~~~~~ 611 (637)
T PRK00174 562 DELRKELRNWVRKEIGPIAKPDVIQFA--PGLPKTRSGKIMRRILRKIAEGE 611 (637)
T ss_pred HHHHHHHHHHHHhhcCCccCCCEEEEc--CCCCCCCCcchHHHHHHHHHcCC
Confidence 33444555555543332 22345555 48999999999999999887643
|
|
| >PLN02736 long-chain acyl-CoA synthetase | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-40 Score=322.00 Aligned_cols=296 Identities=15% Similarity=0.116 Sum_probs=215.4
Q ss_pred CeEEEEeccCCCCCceEEEEeHHHHHHHHHHHHHHhcCCCCCceEEecCCcCChhhhHHHHhhhhcCceeeeeCCccccc
Q psy14342 1 MLAYLDFSVSTTGMLAGIKMSHAAVTSLCRSMKLACELYPSRHIALCLDPYCGLGFALWVLSSVYSGHHSILIPPSEVEV 80 (316)
Q Consensus 1 ~~a~i~~TSGTTG~PK~V~~t~~~l~~~~~~~~~~~~~~~~d~~l~~~p~~h~~g~~~~~~~~l~~G~~~v~~~~~~~~~ 80 (316)
|+++|+|||||||.||||++||+++..++.+....+++.++|++++++|++|+++++. ++.++..|+++++.+.
T Consensus 222 d~a~IlyTSGTTG~PKGV~lsh~~l~~~~~~~~~~~~~~~~d~~l~~lPl~h~~~~~~-~~~~l~~G~~i~~~~~----- 295 (651)
T PLN02736 222 DVATICYTSGTTGTPKGVVLTHGNLIANVAGSSLSTKFYPSDVHISYLPLAHIYERVN-QIVMLHYGVAVGFYQG----- 295 (651)
T ss_pred ceEEEEEcCCCCCCCcEEEEecHHHHHHHHHHHhccCCCCCCEEEEeCCHHHHHHHHH-HHHHHHcCCEEEEeCC-----
Confidence 6899999999999999999999999999888888888999999999999999999986 7889999999988642
Q ss_pred ChHHHHHHHhccceeeEEecccchhhHHhhHHh---------------------------------hh--------hhc-
Q psy14342 81 NPALWLSAVSQYRVRDTFCSYGMLAGIKMSHAA---------------------------------VT--------SLC- 118 (316)
Q Consensus 81 ~~~~~~~~~~~~~~t~~~~~~~~~~~l~~~~~~---------------------------------~~--------~~~- 118 (316)
++..+++.++++++|+++.+|.++..+...... .. ...
T Consensus 296 ~~~~~~~~i~~~~~t~~~~vP~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lg 375 (651)
T PLN02736 296 DNLKLMDDLAALRPTIFCSVPRLYNRIYDGITNAVKESGGLKERLFNAAYNAKKQALENGKNPSPMWDRLVFNKIKAKLG 375 (651)
T ss_pred CHHHHHHHHHHhCCcEEecchHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHcCCCCCchHHHHHHHHHHHHhc
Confidence 567899999999999999999887654322100 00 000
Q ss_pred cccc--cc-c-----------------cccccccchhccCCCCCCCceEEEEeeeccCcccccCCCce-EEec-------
Q psy14342 119 RSMK--LA-C-----------------ELYPSRHIALCLDPYCGLGFALWVLSSVYSGHHSILIPPSE-VEVN------- 170 (316)
Q Consensus 119 ~~~~--ls-~-----------------e~~~~yG~te~~~~~~~~~~~~~~~~~~~~g~~~~~~~g~~-~i~d------- 170 (316)
..++ ++ + .+++.||+||++.......+ .....++.|.|+||++ +++|
T Consensus 376 ~~lr~~~~gGa~l~~~~~~~~~~~~g~~~~~~YG~TE~~~~~~~~~~-----~~~~~~~vG~p~pg~~v~i~d~~~~~~~ 450 (651)
T PLN02736 376 GRVRFMSSGASPLSPDVMEFLRICFGGRVLEGYGMTETSCVISGMDE-----GDNLSGHVGSPNPACEVKLVDVPEMNYT 450 (651)
T ss_pred CcEEEEEeCCCCCCHHHHHHHHHHhCCCeEEEechHHhchheeccCC-----CCCCCCccCCccCceEEEEEEccccCcc
Confidence 0111 11 1 27889999998754332221 1112344556899999 8876
Q ss_pred --------CceEEecC---CCcccCCCcCCC-----------Cceeeec-Cc---CCcccceeEE-CCcccChHhHHHHH
Q psy14342 171 --------PALWLSAV---SQYRVRDTFCSC-----------NGALYQG-AE---RLALDETIML-RGMRYHPIDIENSV 223 (316)
Q Consensus 171 --------~~l~v~~~---~gY~~~~~~~~~-----------d~g~~~~-g~---~GR~dd~i~~-~G~~v~p~eIE~~l 223 (316)
++|+++|| .|||++++.+.. |.|++++ |. +||.||+||+ +|++|+|.|||++|
T Consensus 451 ~~~~~~~~GEl~vrgp~v~~GY~~~~~~t~~~~~~dgw~~TGDlg~~d~dG~l~i~GR~kd~ik~~~G~~V~p~eIE~~l 530 (651)
T PLN02736 451 SEDQPYPRGEICVRGPIIFKGYYKDEVQTREVIDEDGWLHTGDIGLWLPGGRLKIIDRKKNIFKLAQGEYIAPEKIENVY 530 (651)
T ss_pred cCCCCCCCceEEecCCccccccccCHHHHHhhhccCCCeeccceEEEcCCCcEEEEEechhheEcCCCcEechHHHHHHH
Confidence 33999999 899999877643 4455543 33 9999999997 79999999999999
Q ss_pred HHhccccceeEEEeeC--CcEEEEEEecCCc---------hhhcchH---------HHHHHHHHH--------hcCeeec
Q psy14342 224 MRAHKKIAECAVFTWT--NLLVVVVELDGNE---------SEALDLV---------PLVTNAVLE--------EHHLIVG 275 (316)
Q Consensus 224 ~~~~p~v~~~~v~~~~--~~~~~~v~~~~~~---------~~~~~l~---------~~~~~~l~~--------~~~~~~~ 275 (316)
.+ ||.|.+|+|++.. +.+++++++.+.. .+..++. +.+.+.+.+ .++.+ .
T Consensus 531 ~~-~p~V~~a~V~g~~~~~~~~A~vv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~~-~ 608 (651)
T PLN02736 531 AK-CKFVAQCFVYGDSLNSSLVAVVVVDPEVLKAWAASEGIKYEDLKQLCNDPRVRAAVLADMDAVGREAQLRGFEFA-K 608 (651)
T ss_pred hc-CCCeeEEEEEecCCCceeEEEEEeCHHHHHHHHHHcCCCccCHHHHhcCHHHHHHHHHHHHHHHHhcCCCcceee-e
Confidence 99 9999999999863 4677777765421 1111222 222222211 22333 4
Q ss_pred EEEEEcCCCc------ccCCCchhhHHHHHHHHHcCCCCcchh
Q psy14342 276 VAVVVDPGVV------PINSRGEKQRMHLRDGFLADQLDPIYV 312 (316)
Q Consensus 276 ~~~~~~~~~l------P~t~~gKi~r~~l~~~~~~~~~~~~~~ 312 (316)
.+.+++ +. ++|++||++|+++++.|.+ .++.+|+
T Consensus 609 ~~~~~~--~~~~~~~~~lT~~~Ki~R~~i~~~~~~-~i~~~y~ 648 (651)
T PLN02736 609 AVTLVP--EPFTVENGLLTPTFKVKRPQAKAYFAK-AISDMYA 648 (651)
T ss_pred EEEEeC--CCCcCCCCcCChhhhhhHHHHHHHHHH-HHHHHHh
Confidence 555655 34 3799999999999999987 8888885
|
|
| >PLN02860 o-succinylbenzoate-CoA ligase | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.6e-39 Score=309.12 Aligned_cols=295 Identities=15% Similarity=0.110 Sum_probs=213.3
Q ss_pred CeEEEEeccCCCCCceEEEEeHHHHHHHHHHHHHHhcCCCCCceEEecCCcCChhhhHHHHhhhhcCceeeeeCCccccc
Q psy14342 1 MLAYLDFSVSTTGMLAGIKMSHAAVTSLCRSMKLACELYPSRHIALCLDPYCGLGFALWVLSSVYSGHHSILIPPSEVEV 80 (316)
Q Consensus 1 ~~a~i~~TSGTTG~PK~V~~t~~~l~~~~~~~~~~~~~~~~d~~l~~~p~~h~~g~~~~~~~~l~~G~~~v~~~~~~~~~ 80 (316)
++++|+|||||||.||+|.++|+++..+.......+++.++|+++.++|++|++|+.. ++.++..|+++++.+..
T Consensus 173 ~~a~i~~TSGTTG~PKgV~~s~~~~~~~~~~~~~~~~~~~~d~~l~~~pl~h~~g~~~-~~~~l~~G~~~v~~~~~---- 247 (563)
T PLN02860 173 DAVLICFTSGTTGRPKGVTISHSALIVQSLAKIAIVGYGEDDVYLHTAPLCHIGGLSS-ALAMLMVGACHVLLPKF---- 247 (563)
T ss_pred CeEEEEecCCCCCCCceEEeehHHHHHHHHHHHhhcCCCCCCEEEEecCchhhccHHH-HHHHHHcCceEEecCCC----
Confidence 5789999999999999999999999887777777889999999999999999999876 78999999999987532
Q ss_pred ChHHHHHHHhccceeeEEecccchhhHHhhHHhhh-----hhcccccccc------------------cccccccchhcc
Q psy14342 81 NPALWLSAVSQYRVRDTFCSYGMLAGIKMSHAAVT-----SLCRSMKLAC------------------ELYPSRHIALCL 137 (316)
Q Consensus 81 ~~~~~~~~~~~~~~t~~~~~~~~~~~l~~~~~~~~-----~~~~~~~ls~------------------e~~~~yG~te~~ 137 (316)
++..+++.++++++|+++.+|+++..+........ ...+.+-.++ .+++.||+||++
T Consensus 248 ~~~~~~~~i~~~~vt~~~~~P~~~~~l~~~~~~~~~~~~~~~lr~~~~gG~~l~~~~~~~~~~~~~~~~~~~~YG~TE~~ 327 (563)
T PLN02860 248 DAKAALQAIKQHNVTSMITVPAMMADLISLTRKSMTWKVFPSVRKILNGGGSLSSRLLPDAKKLFPNAKLFSAYGMTEAC 327 (563)
T ss_pred CHHHHHHHHHHhCCeeEEeChHHHHHHHHhhhhhhccccccceeEEEeCCCcCCHHHHHHHHHhcCCCceecCCCccccC
Confidence 68889999999999999999998876654322100 0011111111 378899999986
Q ss_pred CCCCCCCc---eEEE------------Ee--eeccC-cccccCCCce-EEecCc------eEEecC---CCcccCCCcCC
Q psy14342 138 DPYCGLGF---ALWV------------LS--SVYSG-HHSILIPPSE-VEVNPA------LWLSAV---SQYRVRDTFCS 189 (316)
Q Consensus 138 ~~~~~~~~---~~~~------------~~--~~~~g-~~~~~~~g~~-~i~d~~------l~v~~~---~gY~~~~~~~~ 189 (316)
........ .... .. ....+ +.|.|+||++ ++++++ |+++|+ .|||++++.+.
T Consensus 328 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vG~p~~~~~v~i~~~~~g~~Gel~v~g~~~~~GY~~~~~~t~ 407 (563)
T PLN02860 328 SSLTFMTLHDPTLESPKQTLQTVNQTKSSSVHQPQGVCVGKPAPHVELKIGLDESSRVGRILTRGPHVMLGYWGQNSETA 407 (563)
T ss_pred cccccccccccccccchhhhhhhcccccccccccCCcccCCccCCcEEEEecCCCCceeEEEEecCcccccccCCccccc
Confidence 53321110 0000 00 00111 3456899999 886543 999999 89999887654
Q ss_pred C-----------Cceeeec-Cc---CCcccceeEECCcccChHhHHHHHHHhccccceeEEEeeC-----CcEEEEEEec
Q psy14342 190 C-----------NGALYQG-AE---RLALDETIMLRGMRYHPIDIENSVMRAHKKIAECAVFTWT-----NLLVVVVELD 249 (316)
Q Consensus 190 ~-----------d~g~~~~-g~---~GR~dd~i~~~G~~v~p~eIE~~l~~~~p~v~~~~v~~~~-----~~~~~~v~~~ 249 (316)
. |.|++++ |. .||.||+||++|++|+|.|||++|.+ ||.|.+|+|++.. +.+++++++.
T Consensus 408 ~~~~~~g~~~TGDl~~~d~dG~l~~~GR~~d~i~~~G~~v~p~eIE~~l~~-~p~V~~~~v~~~~~~~~~~~~~a~v~~~ 486 (563)
T PLN02860 408 SVLSNDGWLDTGDIGWIDKAGNLWLIGRSNDRIKTGGENVYPEEVEAVLSQ-HPGVASVVVVGVPDSRLTEMVVACVRLR 486 (563)
T ss_pred hhccCCCeEEccceEEEcCCCCEEEeecccceeEECCEEccHHHHHHHHHh-CCCcceeEEEEEecCcCCceEEEEEEEC
Confidence 3 5555543 33 99999999999999999999999999 9999999999983 4577777765
Q ss_pred CCc---------------hhhcchHHHHHHH-HHHhcCeeecEEEEEcCCCcccCCCchhhHHHHHHHHHc
Q psy14342 250 GNE---------------SEALDLVPLVTNA-VLEEHHLIVGVAVVVDPGVVPINSRGEKQRMHLRDGFLA 304 (316)
Q Consensus 250 ~~~---------------~~~~~l~~~~~~~-l~~~~~~~~~~~~~~~~~~lP~t~~gKi~r~~l~~~~~~ 304 (316)
+.. .+.+++.+.+++. +. .+..|. .+.++ .+++|+|++||++|++|++.+..
T Consensus 487 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~L~-~~~~P~-~~~~~-~~~lP~t~~GKi~r~~L~~~~~~ 554 (563)
T PLN02860 487 DGWIWSDNEKENAKKNLTLSSETLRHHCREKNLS-RFKIPK-LFVQW-RKPFPLTTTGKIRRDEVRREVLS 554 (563)
T ss_pred CccccccccchhhcccccccHHHHHHHHhhCccc-ccccce-EEEEE-ecCCCCCcccchhHHHHHHHHHH
Confidence 431 1123444545442 44 344442 33332 23799999999999999998865
|
|
| >PRK07445 O-succinylbenzoic acid--CoA ligase; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.9e-39 Score=300.47 Aligned_cols=290 Identities=10% Similarity=0.047 Sum_probs=207.5
Q ss_pred CeEEEEeccCCCCCceEEEEeHHHHHHHHHHHHHHhcCCCCCceEEecCCcCChhhhHHHHhhhhcCceeeeeCCccccc
Q psy14342 1 MLAYLDFSVSTTGMLAGIKMSHAAVTSLCRSMKLACELYPSRHIALCLDPYCGLGFALWVLSSVYSGHHSILIPPSEVEV 80 (316)
Q Consensus 1 ~~a~i~~TSGTTG~PK~V~~t~~~l~~~~~~~~~~~~~~~~d~~l~~~p~~h~~g~~~~~~~~l~~G~~~v~~~~~~~~~ 80 (316)
++++++|||||||.||+|++||+++..++......+++.+ ++.++++|++|.+|+.. ++.++..|+++++.+...+ .
T Consensus 121 ~~~~i~~TSGTTG~PKgV~~t~~~l~~~~~~~~~~~~~~~-~~~~~~~Pl~h~~g~~~-~~~~l~~G~t~v~~~~~~~-~ 197 (452)
T PRK07445 121 TGWIMIPTGGSSGQIRFAIHTWETLTASVQGFQRYFQLQQ-VNSFCVLPLYHVSGLMQ-FMRSFLTGGKLVILPYKRL-K 197 (452)
T ss_pred CcEEEEeCCCCCCCCcEEEechHHHHHHHHHHHHHhcCCC-CceEeccCchhhhhHHH-HHHHHHcCCeEEEcChHhc-c
Confidence 5789999999999999999999999888887777777765 46788999999999876 7899999999998753221 1
Q ss_pred ChHHHHHHHhccceeeEEecccchhhHHhhHHhhhhhcccccccc----------------cccccccchhccCCCCCCC
Q psy14342 81 NPALWLSAVSQYRVRDTFCSYGMLAGIKMSHAAVTSLCRSMKLAC----------------ELYPSRHIALCLDPYCGLG 144 (316)
Q Consensus 81 ~~~~~~~~~~~~~~t~~~~~~~~~~~l~~~~~~~~~~~~~~~ls~----------------e~~~~yG~te~~~~~~~~~ 144 (316)
. ......++++++++.+|+++..+...........+.+-.++ .+++.||+||++.......
T Consensus 198 ~---~~~~~~~~~~t~~~~vP~~l~~l~~~~~~~l~~l~~i~~gG~~l~~~~~~~~~~~~~~l~~~YG~TE~~~~~~~~~ 274 (452)
T PRK07445 198 S---GQELPPNPSDFFLSLVPTQLQRLLQLRPQWLAQFRTILLGGAPAWPSLLEQARQLQLRLAPTYGMTETASQIATLK 274 (452)
T ss_pred c---hhhhhhhcCceEEEehHHHHHHHHhhChhhhhcceEEEECCccCCHHHHHHHHhcCCeEecCcchhhhcccccccC
Confidence 1 12333467888888888888755432111000011111111 3788999999865433222
Q ss_pred ceEEEEeeeccCcccccCCCce-EEec---CceEEecC---CCcccCCCcC-----CCCceeeec-Cc---CCcccceeE
Q psy14342 145 FALWVLSSVYSGHHSILIPPSE-VEVN---PALWLSAV---SQYRVRDTFC-----SCNGALYQG-AE---RLALDETIM 208 (316)
Q Consensus 145 ~~~~~~~~~~~g~~~~~~~g~~-~i~d---~~l~v~~~---~gY~~~~~~~-----~~d~g~~~~-g~---~GR~dd~i~ 208 (316)
+... ....++.+.++||++ ++++ ++|+++|+ .|||+++... ++|.|++++ |. .||.||+||
T Consensus 275 ~~~~---~~~~~~~G~~~p~~~v~i~~g~~Gel~v~g~~~~~gY~~~~~~~~g~~~TGDl~~~d~dG~l~~~GR~dd~I~ 351 (452)
T PRK07445 275 PDDF---LAGNNSSGQVLPHAQITIPANQTGNITIQAQSLALGYYPQILDSQGIFETDDLGYLDAQGYLHILGRNSQKII 351 (452)
T ss_pred chhh---ccCCCcCCccCCCCeEEEcCCCcceEEEeCCccchhhcCCccCCCCEEECCCEEEEcCCCCEEEEeecCCEEE
Confidence 2100 011234455899999 6642 33999999 8999865322 447777754 43 999999999
Q ss_pred ECCcccChHhHHHHHHHhccccceeEEEeeC-----CcEEEEEEecCCchhhcchHHHHHHHHHHhcCeeecEEEEEcCC
Q psy14342 209 LRGMRYHPIDIENSVMRAHKKIAECAVFTWT-----NLLVVVVELDGNESEALDLVPLVTNAVLEEHHLIVGVAVVVDPG 283 (316)
Q Consensus 209 ~~G~~v~p~eIE~~l~~~~p~v~~~~v~~~~-----~~~~~~v~~~~~~~~~~~l~~~~~~~l~~~~~~~~~~~~~~~~~ 283 (316)
++|+||+|.|||++|.+ ||.|.+|+|++.. +.+++++...+...+.+++.+++++.+. .++.| ..+.+++
T Consensus 352 ~~G~~V~p~eIE~~l~~-~p~V~~a~V~g~~~~~~g~~~~a~vv~~~~~~~~~~l~~~~~~~L~-~~~~P-~~i~~v~-- 426 (452)
T PRK07445 352 TGGENVYPAEVEAAILA-TGLVQDVCVLGLPDPHWGEVVTAIYVPKDPSISLEELKTAIKDQLS-PFKQP-KHWIPVP-- 426 (452)
T ss_pred ECCEEECHHHHHHHHHh-CCCcceEEEEeccCcCCCcEEEEEEEeCCCCCCHHHHHHHHHHhCC-cccCC-eEEEEec--
Confidence 99999999999999999 9999999999883 4566766655544445677777777766 45554 3555555
Q ss_pred CcccCCCchhhHHHHHHHHHc
Q psy14342 284 VVPINSRGEKQRMHLRDGFLA 304 (316)
Q Consensus 284 ~lP~t~~gKi~r~~l~~~~~~ 304 (316)
++|+|++||++|++|++.+.+
T Consensus 427 ~lP~t~~GKi~r~~L~~~~~~ 447 (452)
T PRK07445 427 QLPRNPQGKINRQQLQQIAVQ 447 (452)
T ss_pred CCCCCCCcccCHHHHHHHHHH
Confidence 899999999999999998876
|
|
| >PRK07529 AMP-binding domain protein; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.6e-39 Score=310.39 Aligned_cols=298 Identities=16% Similarity=0.111 Sum_probs=224.0
Q ss_pred CeEEEEeccCCCCCceEEEEeHHHHHHHHHHHHHHhcCCCCCceEEecCCcCChhhhHHHHhhhhcCceeeeeCCccccc
Q psy14342 1 MLAYLDFSVSTTGMLAGIKMSHAAVTSLCRSMKLACELYPSRHIALCLDPYCGLGFALWVLSSVYSGHHSILIPPSEVEV 80 (316)
Q Consensus 1 ~~a~i~~TSGTTG~PK~V~~t~~~l~~~~~~~~~~~~~~~~d~~l~~~p~~h~~g~~~~~~~~l~~G~~~v~~~~~~~~~ 80 (316)
|+++|+|||||||.||+|.+||+++..++......+++.++|++++++|++|.++++..++.++..|+++++.++..+..
T Consensus 214 ~~a~i~~TSGTTG~PK~v~~sh~~l~~~~~~~~~~~~~~~~d~~l~~~pl~h~~~~~~~~~~~l~~G~~vv~~~~~~~~~ 293 (632)
T PRK07529 214 DVAAYFHTGGTTGMPKLAQHTHGNEVANAWLGALLLGLGPGDTVFCGLPLFHVNALLVTGLAPLARGAHVVLATPQGYRG 293 (632)
T ss_pred ceEEEEECCCccCcCCEEEEcHHHHHHHHHHHHHhcCCCCCCEEEEecCchhhhHHHHHHHHHHHCCCEEEecCccccCc
Confidence 57999999999999999999999999888888888888999999999999999999888899999999999987644322
Q ss_pred C--hHHHHHHHhccceeeEEecccchhhHHhhHHhh-h-hhcccccccc-----------------cccccccchhccCC
Q psy14342 81 N--PALWLSAVSQYRVRDTFCSYGMLAGIKMSHAAV-T-SLCRSMKLAC-----------------ELYPSRHIALCLDP 139 (316)
Q Consensus 81 ~--~~~~~~~~~~~~~t~~~~~~~~~~~l~~~~~~~-~-~~~~~~~ls~-----------------e~~~~yG~te~~~~ 139 (316)
. ...+++.+++++++++..+|+++..+....... . ...+.+-.++ .+++.||+||++..
T Consensus 294 ~~~~~~~~~~i~~~~vt~~~~~P~~~~~l~~~~~~~~~~~slr~v~~gg~~l~~~l~~~~~~~~g~~l~~~YG~TE~~~~ 373 (632)
T PRK07529 294 PGVIANFWKIVERYRINFLSGVPTVYAALLQVPVDGHDISSLRYALCGAAPLPVEVFRRFEAATGVRIVEGYGLTEATCV 373 (632)
T ss_pred chHHHHHHHHHHHhCCeEEEeHHHHHHHHHhCcccCCCccceEEEEEcCCCCCHHHHHHHHHHhCCcEeeeecccccCcc
Confidence 1 357889999999999999999887665432211 0 0011111111 28889999998754
Q ss_pred CCCCCceEEEEeeeccCcccccCCCce-EEe--cC--------------ceEEecC---CCcccCCCcC----------C
Q psy14342 140 YCGLGFALWVLSSVYSGHHSILIPPSE-VEV--NP--------------ALWLSAV---SQYRVRDTFC----------S 189 (316)
Q Consensus 140 ~~~~~~~~~~~~~~~~g~~~~~~~g~~-~i~--d~--------------~l~v~~~---~gY~~~~~~~----------~ 189 (316)
....... .....++.|.++|+.+ +++ |+ +|+++|+ .||++++... +
T Consensus 374 ~~~~~~~----~~~~~~svG~~~p~~~v~i~~~d~~g~~~~~~~~g~~Gel~v~gp~v~~GY~~~~~~~~~~~~~gw~~T 449 (632)
T PRK07529 374 SSVNPPD----GERRIGSVGLRLPYQRVRVVILDDAGRYLRDCAVDEVGVLCIAGPNVFSGYLEAAHNKGLWLEDGWLNT 449 (632)
T ss_pred cccCCcc----ccccCCCcccccCCceEEEEEcCCCCcccccCCCCCceEEEEECCCccccccCCccccccccCCCceEc
Confidence 4332211 1112345556788887 553 32 1999999 8999865322 2
Q ss_pred CCceeeec-Cc---CCcccceeEECCcccChHhHHHHHHHhccccceeEEEeeC-----CcEEEEEEecCCc-hhhcchH
Q psy14342 190 CNGALYQG-AE---RLALDETIMLRGMRYHPIDIENSVMRAHKKIAECAVFTWT-----NLLVVVVELDGNE-SEALDLV 259 (316)
Q Consensus 190 ~d~g~~~~-g~---~GR~dd~i~~~G~~v~p~eIE~~l~~~~p~v~~~~v~~~~-----~~~~~~v~~~~~~-~~~~~l~ 259 (316)
+|.|++++ |. .||.||+||++|++|+|.|||++|.+ ||.|.+|+|++.. +.+++++++.+.. .+.+++.
T Consensus 450 GDlg~~d~dG~l~i~GR~~d~i~~~G~~i~p~eIE~~l~~-~p~V~~a~vvg~~d~~~ge~~~a~v~l~~~~~~~~~~l~ 528 (632)
T PRK07529 450 GDLGRIDADGYFWLTGRAKDLIIRGGHNIDPAAIEEALLR-HPAVALAAAVGRPDAHAGELPVAYVQLKPGASATEAELL 528 (632)
T ss_pred CcEEEEcCCceEEEEecccCEEEeCCEEECHHHHHHHHHh-CCCeeEEEEEeccCCCCCceeEEEEEEcCCCCCCHHHHH
Confidence 25555543 33 89999999999999999999999999 9999999999873 4577788776543 3446788
Q ss_pred HHHHHHHHHhcCeeecEEEEEcCCCcccCCCchhhHHHHHHHHHcCC
Q psy14342 260 PLVTNAVLEEHHLIVGVAVVVDPGVVPINSRGEKQRMHLRDGFLADQ 306 (316)
Q Consensus 260 ~~~~~~l~~~~~~~~~~~~~~~~~~lP~t~~gKi~r~~l~~~~~~~~ 306 (316)
+++++++.+.+..| ..+.+++ +||+|++||++|++|++.+....
T Consensus 529 ~~~~~~l~~~~~~P-~~i~~v~--~lP~t~~GKi~r~~Lr~~~~~~~ 572 (632)
T PRK07529 529 AFARDHIAERAAVP-KHVRILD--ALPKTAVGKIFKPALRRDAIRRV 572 (632)
T ss_pred HHHHHhcchhccCC-cEEEEec--CCCCCCCCcccHHHHHHHHHHHH
Confidence 88888887555555 4666665 89999999999999999887643
|
|
| >PRK09192 acyl-CoA synthetase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-38 Score=304.91 Aligned_cols=311 Identities=18% Similarity=0.223 Sum_probs=226.8
Q ss_pred CeEEEEeccCCCCCceEEEEeHHHHHHHHHHHHH-HhcCCCCCceEEecCCcCChhhhHHHHhhhhcCceeeeeCCcccc
Q psy14342 1 MLAYLDFSVSTTGMLAGIKMSHAAVTSLCRSMKL-ACELYPSRHIALCLDPYCGLGFALWVLSSVYSGHHSILIPPSEVE 79 (316)
Q Consensus 1 ~~a~i~~TSGTTG~PK~V~~t~~~l~~~~~~~~~-~~~~~~~d~~l~~~p~~h~~g~~~~~~~~l~~G~~~v~~~~~~~~ 79 (316)
|+++|+|||||||.||+|.++|++++.++..... .+++.++|+++.++|++|++|++..++.++..|+++++..+..+.
T Consensus 177 ~~a~i~~TSGTTG~PKgv~~sh~~~~~~~~~~~~~~~~~~~~d~~l~~~p~~h~~g~~~~~~~~l~~g~~~~~~~~~~~~ 256 (579)
T PRK09192 177 DIAYLQYSSGSTRFPRGVIITHRALMANLRAISHDGLKVRPGDRCVSWLPFYHDMGLVGFLLTPVATQLSVDYLPTRDFA 256 (579)
T ss_pred CeEEEEecCCCCCCCceEEeeHHHHHHHHHHHHhhcccCCCCCeEEEeCCCCCcchhHHHHHHHHHhCCeeEeeCHHHHH
Confidence 5799999999999999999999999988877776 788999999999999999999998788889999998877655555
Q ss_pred cChHHHHHHHhccceeeEEecccchhhHHhhHH-hh--h----hhcccccccc-----------------------cccc
Q psy14342 80 VNPALWLSAVSQYRVRDTFCSYGMLAGIKMSHA-AV--T----SLCRSMKLAC-----------------------ELYP 129 (316)
Q Consensus 80 ~~~~~~~~~~~~~~~t~~~~~~~~~~~l~~~~~-~~--~----~~~~~~~ls~-----------------------e~~~ 129 (316)
.+|..|++.+.++++++.+ .|+++..+..... .. . ...+.+-..+ .+++
T Consensus 257 ~~~~~~~~~i~~~~~t~~~-~~~~~~~l~~~~~~~~~~~~~~l~~lr~~~~gG~~l~~~~~~~~~~~~~~~g~~~~~~~~ 335 (579)
T PRK09192 257 RRPLQWLDLISRNRGTISY-SPPFGYELCARRVNSKDLAELDLSCWRVAGIGADMIRPDVLHQFAEAFAPAGFDDKAFMP 335 (579)
T ss_pred HCHHHHHHHHHhcCcEEEe-CCcHHHHHHHHhhccccccccchhhhheeEecCccCCHHHHHHHHHHHHhcCCChhhccc
Confidence 5789999999999998554 4555433222110 00 0 0000000011 1678
Q ss_pred cccchhccCCCCCCCc--eEEE--Ee-------------------eeccCcccccCCCce-EEecCc-----------eE
Q psy14342 130 SRHIALCLDPYCGLGF--ALWV--LS-------------------SVYSGHHSILIPPSE-VEVNPA-----------LW 174 (316)
Q Consensus 130 ~yG~te~~~~~~~~~~--~~~~--~~-------------------~~~~g~~~~~~~g~~-~i~d~~-----------l~ 174 (316)
.||+||++........ .... .. ....++.|.++||.+ ++.|++ |+
T Consensus 336 ~yG~TE~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vG~~~p~~~v~i~d~~~~~~~~g~~Gel~ 415 (579)
T PRK09192 336 SYGLAEATLAVSFSPLGSGIVVEEVDRDRLEYQGKAVAPGAETRRVRTFVNCGKALPGHEIEIRNEAGMPLPERVVGHIC 415 (579)
T ss_pred ccccccceeEEeccCCCCCceEEEEcHHHhcCCceeeccCCCCccceeEeecCCcCCCcEEEEECCCCCCCCCCCEEEEE
Confidence 8999998643221110 0000 00 000123455899999 887753 99
Q ss_pred EecC---CCcccCCCcCC-----------CCceeeecCc---CCcccceeEECCcccChHhHHHHHHHhccccc--eeEE
Q psy14342 175 LSAV---SQYRVRDTFCS-----------CNGALYQGAE---RLALDETIMLRGMRYHPIDIENSVMRAHKKIA--ECAV 235 (316)
Q Consensus 175 v~~~---~gY~~~~~~~~-----------~d~g~~~~g~---~GR~dd~i~~~G~~v~p~eIE~~l~~~~p~v~--~~~v 235 (316)
++|+ .|||++ +.+. +|.|++.+|. +||.||+||++|++|+|.|||++|.+ ||.|. +|+|
T Consensus 416 i~g~~~~~gY~~~-~~~~~~~~~dgw~~TGDlg~~~~G~l~~~GR~dd~i~~~G~~v~p~eIE~~l~~-~p~V~~~~~~v 493 (579)
T PRK09192 416 VRGPSLMSGYFRD-EESQDVLAADGWLDTGDLGYLLDGYLYITGRAKDLIIINGRNIWPQDIEWIAEQ-EPELRSGDAAA 493 (579)
T ss_pred ecCCchhhhhcCC-ccccccccCCceeeccceeeEECCEEEEEeccccEEEECCCccCHHHHHHHHHh-cCCccCCcEEE
Confidence 9999 899998 3332 2566665554 99999999999999999999999999 99998 7888
Q ss_pred EeeC----CcEEEEEEecCCc-hhhcchHHHHHHHHHHhcCeeecEEEEEcCCCcccCCCchhhHHHHHHHHHcCCCCcc
Q psy14342 236 FTWT----NLLVVVVELDGNE-SEALDLVPLVTNAVLEEHHLIVGVAVVVDPGVVPINSRGEKQRMHLRDGFLADQLDPI 310 (316)
Q Consensus 236 ~~~~----~~~~~~v~~~~~~-~~~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~lP~t~~gKi~r~~l~~~~~~~~~~~~ 310 (316)
++.. +.++++++..... .+.+++.+++++.+...+..+ ..+.++..++||+|++||++|++|++.+.+|.++++
T Consensus 494 ~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~~~l~~~~~~~-~~i~~~~~~~lP~t~~GKv~R~~l~~~~~~~~~~~~ 572 (579)
T PRK09192 494 FSIAQENGEKIVLLVQCRISDEERRGQLIHALAALVRSEFGVE-AAVELVPPHSLPRTSSGKLSRAKAKKRYLSGAFASL 572 (579)
T ss_pred EEeccCCCeeEEEEEEecCCChHHHHHHHHHHHHHHHHHhCCC-ceEEEeCCCCcCCCCCcchhHHHHHHHHHcCCCCcc
Confidence 8874 2466666554432 344678888888887556555 357777767899999999999999999999999988
Q ss_pred hhhcc
Q psy14342 311 YVAYN 315 (316)
Q Consensus 311 ~~~~~ 315 (316)
|.+-|
T Consensus 573 ~~~~~ 577 (579)
T PRK09192 573 DVAAS 577 (579)
T ss_pred ccccc
Confidence 87654
|
|
| >PRK04319 acetyl-CoA synthetase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.2e-39 Score=307.45 Aligned_cols=292 Identities=16% Similarity=0.147 Sum_probs=215.1
Q ss_pred CeEEEEeccCCCCCceEEEEeHHHHHHHHHHHHHHhcCCCCCceEEecCCcCChhhhHHHHhhhhcCceeeeeCCccccc
Q psy14342 1 MLAYLDFSVSTTGMLAGIKMSHAAVTSLCRSMKLACELYPSRHIALCLDPYCGLGFALWVLSSVYSGHHSILIPPSEVEV 80 (316)
Q Consensus 1 ~~a~i~~TSGTTG~PK~V~~t~~~l~~~~~~~~~~~~~~~~d~~l~~~p~~h~~g~~~~~~~~l~~G~~~v~~~~~~~~~ 80 (316)
|+++|+|||||||.||+|+++|+++..++......+++.++|+++...|+.|.+|+...++.++..|+++++.... .
T Consensus 206 ~~a~i~~TSGTTG~PKgV~~s~~~l~~~~~~~~~~~~~~~~d~~~~~~~~~~~~g~~~~~~~~l~~G~~~v~~~~~---~ 282 (570)
T PRK04319 206 DGAILHYTSGSTGKPKGVLHVHNAMLQHYQTGKYVLDLHEDDVYWCTADPGWVTGTSYGIFAPWLNGATNVIDGGR---F 282 (570)
T ss_pred CCEEEEeCCCCCCCCCEEEEecHHHHHHHHHHHHhcCCCCCceEEecCChHHhhCchHHHHHHHhcCceEEEECCC---C
Confidence 5799999999999999999999999988888888889999999999999999999887799999999999987532 2
Q ss_pred ChHHHHHHHhccceeeEEecccchhhHHhhHHhh-h----hhcccccccc-----------------cccccccchhccC
Q psy14342 81 NPALWLSAVSQYRVRDTFCSYGMLAGIKMSHAAV-T----SLCRSMKLAC-----------------ELYPSRHIALCLD 138 (316)
Q Consensus 81 ~~~~~~~~~~~~~~t~~~~~~~~~~~l~~~~~~~-~----~~~~~~~ls~-----------------e~~~~yG~te~~~ 138 (316)
+|..+++.++++++++++.+|+++..+....... . ...+.+-.++ .+++.||+||++.
T Consensus 283 ~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~lr~~~~gG~~l~~~~~~~~~~~~g~~i~~~YG~tE~~~ 362 (570)
T PRK04319 283 SPERWYRILEDYKVTVWYTAPTAIRMLMGAGDDLVKKYDLSSLRHILSVGEPLNPEVVRWGMKVFGLPIHDNWWMTETGG 362 (570)
T ss_pred CHHHHHHHHHHcCCeEEEeCHHHHHHHHhcCCcccccCCcccceEEEEcccCCCHHHHHHHHHHhCCCeEeceeecccCC
Confidence 6889999999999999999999887664422110 0 0011111111 2788999999875
Q ss_pred CCCCCCceEEEEeeeccCcccccCCCce-EEecCc-----------eEEec--C---CCcccCCCcCC----------CC
Q psy14342 139 PYCGLGFALWVLSSVYSGHHSILIPPSE-VEVNPA-----------LWLSA--V---SQYRVRDTFCS----------CN 191 (316)
Q Consensus 139 ~~~~~~~~~~~~~~~~~g~~~~~~~g~~-~i~d~~-----------l~v~~--~---~gY~~~~~~~~----------~d 191 (316)
......+. .....+..|.++||++ +++|++ |++++ + .|||++++.+. +|
T Consensus 363 ~~~~~~~~----~~~~~~~~G~p~~g~~~~i~d~~~~~~~~g~~Gel~i~~~~~~~~~GY~~~~~~~~~~~~~gw~~TGD 438 (570)
T PRK04319 363 IMIANYPA----MDIKPGSMGKPLPGIEAAIVDDQGNELPPNRMGNLAIKKGWPSMMRGIWNNPEKYESYFAGDWYVSGD 438 (570)
T ss_pred EEEecCCC----CCCCCCcCcCCCCCCEEEEECCCCCCCCCCCceEEEEcCCCChHHhHhcCCHHHhhhhhcCCceEeCc
Confidence 33221110 0112334556899999 887753 89986 5 79999876553 25
Q ss_pred ceeeecCc----CCcccceeEECCcccChHhHHHHHHHhccccceeEEEeeC-----CcEEEEEEecCCchhhcchHHHH
Q psy14342 192 GALYQGAE----RLALDETIMLRGMRYHPIDIENSVMRAHKKIAECAVFTWT-----NLLVVVVELDGNESEALDLVPLV 262 (316)
Q Consensus 192 ~g~~~~g~----~GR~dd~i~~~G~~v~p~eIE~~l~~~~p~v~~~~v~~~~-----~~~~~~v~~~~~~~~~~~l~~~~ 262 (316)
.|++++++ +||.||+||++|++|+|.|||++|.+ ||.|.+++|++.. +.++++++..+.....+++.+++
T Consensus 439 l~~~~~~g~l~~~GR~~d~i~~~G~~i~p~eIE~~l~~-~~~V~~~~v~g~~~~~~g~~~~a~v~~~~~~~~~~~~~~~l 517 (570)
T PRK04319 439 SAYMDEDGYFWFQGRVDDVIKTSGERVGPFEVESKLME-HPAVAEAGVIGKPDPVRGEIIKAFVALRPGYEPSEELKEEI 517 (570)
T ss_pred EEEECCCeeEEEEecCCCEEEECCEEECHHHHHHHHhh-CCCeeecceecccCcCCceEEEEEEEECCCCCCCHHHHHHH
Confidence 55554432 89999999999999999999999999 9999999999873 45666676665432223333444
Q ss_pred HHHHHHh---cCeeecEEEEEcCCCcccCCCchhhHHHHHHHHH
Q psy14342 263 TNAVLEE---HHLIVGVAVVVDPGVVPINSRGEKQRMHLRDGFL 303 (316)
Q Consensus 263 ~~~l~~~---~~~~~~~~~~~~~~~lP~t~~gKi~r~~l~~~~~ 303 (316)
+..+.+. +..| ..+.+++ +||+|++||++|++|++...
T Consensus 518 ~~~~~~~l~~~~~P-~~i~~v~--~iP~t~~GKv~r~~L~~~~~ 558 (570)
T PRK04319 518 RGFVKKGLGAHAAP-REIEFKD--KLPKTRSGKIMRRVLKAWEL 558 (570)
T ss_pred HHHHHHhcccccCC-cEEEEeC--CCCCCCchhhhHHHHHHHHh
Confidence 4444433 3333 3555554 99999999999999998864
|
|
| >PRK10524 prpE propionyl-CoA synthetase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.4e-39 Score=309.74 Aligned_cols=301 Identities=17% Similarity=0.145 Sum_probs=215.6
Q ss_pred CeEEEEeccCCCCCceEEEEeHHHHHHH-HHHHHHHhcCCCCCceEEecCCcCChhhhHHHHhhhhcCceeeeeCCcccc
Q psy14342 1 MLAYLDFSVSTTGMLAGIKMSHAAVTSL-CRSMKLACELYPSRHIALCLDPYCGLGFALWVLSSVYSGHHSILIPPSEVE 79 (316)
Q Consensus 1 ~~a~i~~TSGTTG~PK~V~~t~~~l~~~-~~~~~~~~~~~~~d~~l~~~p~~h~~g~~~~~~~~l~~G~~~v~~~~~~~~ 79 (316)
|+++|+|||||||.||||+++|+++... ...+...+++.++|+++...|+.|..++.+.++.++..|+++++.+.....
T Consensus 234 d~a~il~TSGTTG~PKgV~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~l~~G~~~v~~~g~~~~ 313 (629)
T PRK10524 234 EPSYILYTSGTTGKPKGVQRDTGGYAVALATSMDTIFGGKAGETFFCASDIGWVVGHSYIVYAPLLAGMATIMYEGLPTR 313 (629)
T ss_pred CceEEEeecCCCCCCceEEECCcHHHHHHHHHHHHhcCCCCCCEEEEcCCCCeeccchHHHHHHHhCCCEEEEECCCCCC
Confidence 5899999999999999999999987543 344556678899999999999999999877789999999999998755445
Q ss_pred cChHHHHHHHhccceeeEEecccchhhHHhhHHhh-h----hhcccccccc-----------------cccccccchhcc
Q psy14342 80 VNPALWLSAVSQYRVRDTFCSYGMLAGIKMSHAAV-T----SLCRSMKLAC-----------------ELYPSRHIALCL 137 (316)
Q Consensus 80 ~~~~~~~~~~~~~~~t~~~~~~~~~~~l~~~~~~~-~----~~~~~~~ls~-----------------e~~~~yG~te~~ 137 (316)
.++..++++++++++|+++.+|+++..+....... . ...+.+-..+ .+++.||+||++
T Consensus 314 ~~~~~~~~~i~~~~vt~~~~~P~~~~~l~~~~~~~~~~~~l~~lr~i~~~Ge~l~~~~~~~~~~~~~~~v~~~YG~TE~~ 393 (629)
T PRK10524 314 PDAGIWWRIVEKYKVNRMFSAPTAIRVLKKQDPALLRKHDLSSLRALFLAGEPLDEPTASWISEALGVPVIDNYWQTETG 393 (629)
T ss_pred CChHHHHHHHHHcCceEEEeCHHHHHHHHhcCcccccccChhheeEEEEeCCCCCHHHHHHHHHhcCCCeEecccccccc
Confidence 57889999999999999999999887654432110 0 0011111111 278899999997
Q ss_pred CCCCCCCceEEEEeeeccCcccccCCCce-EEecC-c-----------eEEecC------CCcccCCCcC----------
Q psy14342 138 DPYCGLGFALWVLSSVYSGHHSILIPPSE-VEVNP-A-----------LWLSAV------SQYRVRDTFC---------- 188 (316)
Q Consensus 138 ~~~~~~~~~~~~~~~~~~g~~~~~~~g~~-~i~d~-~-----------l~v~~~------~gY~~~~~~~---------- 188 (316)
.......+... ......|..+.|+||++ +++|+ + |+++|| .|||++++.+
T Consensus 394 ~~~~~~~~~~~-~~~~~~~~~G~p~~g~~~~i~d~~~g~~~~~g~~Gel~i~gp~~~~~~~~~~~~~~~~~~~~~~~~~~ 472 (629)
T PRK10524 394 WPILAIARGVE-DRPTRLGSPGVPMYGYNVKLLNEVTGEPCGPNEKGVLVIEGPLPPGCMQTVWGDDDRFVKTYWSLFGR 472 (629)
T ss_pred chhhcCCCCcc-cCcCCCCCcccCcCCceEEEEeCCCCCCCCCCCcEEEEEcCCCChhhcCCccCChHHHHHhhhccCCC
Confidence 43222211000 00112234456899999 88887 2 899986 6788876432
Q ss_pred ----CCCceeeec-Cc---CCcccceeEECCcccChHhHHHHHHHhccccceeEEEeeC-----CcEEEEEEecCCchh-
Q psy14342 189 ----SCNGALYQG-AE---RLALDETIMLRGMRYHPIDIENSVMRAHKKIAECAVFTWT-----NLLVVVVELDGNESE- 254 (316)
Q Consensus 189 ----~~d~g~~~~-g~---~GR~dd~i~~~G~~v~p~eIE~~l~~~~p~v~~~~v~~~~-----~~~~~~v~~~~~~~~- 254 (316)
++|.|++++ |. .||.||+||++|++|+|.|||++|.+ ||.|.+|+|++.. +.++++++..+....
T Consensus 473 ~~~~TGDl~~~d~dG~l~i~GR~dd~i~~~G~ri~p~eIE~~l~~-~p~V~e~~vvg~~d~~~g~~~~~~vv~~~~~~~~ 551 (629)
T PRK10524 473 QVYSTFDWGIRDADGYYFILGRTDDVINVAGHRLGTREIEESISS-HPAVAEVAVVGVKDALKGQVAVAFVVPKDSDSLA 551 (629)
T ss_pred cEEEcCCcEEEcCCCcEEEEEEecCeEEeCCEEeCHHHHHHHHHh-CCCcceEEEEccccCCCCeEEEEEEEECCCCccc
Confidence 225565543 43 99999999999999999999999999 9999999999884 356666666543211
Q ss_pred ----hcchHHHHHHHHHHhcCee--ecEEEEEcCCCcccCCCchhhHHHHHHHHHcC
Q psy14342 255 ----ALDLVPLVTNAVLEEHHLI--VGVAVVVDPGVVPINSRGEKQRMHLRDGFLAD 305 (316)
Q Consensus 255 ----~~~l~~~~~~~l~~~~~~~--~~~~~~~~~~~lP~t~~gKi~r~~l~~~~~~~ 305 (316)
.+++.+++++.+.+..... +..+.++ +.||+|++||++|+.|++.+...
T Consensus 552 ~~~~~~~~~~~i~~~~~~~l~~~~~P~~i~~v--~~lP~T~sGKi~R~~L~~~~~~~ 606 (629)
T PRK10524 552 DREARLALEKEIMALVDSQLGAVARPARVWFV--SALPKTRSGKLLRRAIQAIAEGR 606 (629)
T ss_pred cccchHHHHHHHHHHHHhhcCCCcCCCEEEEc--CCCCCCCCcchHHHHHHHHHcCC
Confidence 1234555665555544332 2345555 48999999999999999987643
|
|
| >PLN03052 acetate--CoA ligase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-38 Score=311.38 Aligned_cols=294 Identities=15% Similarity=0.066 Sum_probs=209.1
Q ss_pred CeEEEEeccCCCCCceEEEEeHHHHHHHHHHHHHHhcCCCCCceEEecCCcCChhhhHHHHhhhhcCceeeeeCCccccc
Q psy14342 1 MLAYLDFSVSTTGMLAGIKMSHAAVTSLCRSMKLACELYPSRHIALCLDPYCGLGFALWVLSSVYSGHHSILIPPSEVEV 80 (316)
Q Consensus 1 ~~a~i~~TSGTTG~PK~V~~t~~~l~~~~~~~~~~~~~~~~d~~l~~~p~~h~~g~~~~~~~~l~~G~~~v~~~~~~~~~ 80 (316)
|+++|+|||||||.||||+|+|++++.........++++++|+++...|+.|+++.+. ++.+|..|+++++.+...
T Consensus 357 ~~a~IlyTSGTTG~PKgVv~sh~~~l~~~~~~~~~~~l~~~d~~~~~~~l~w~~g~~~-v~~~L~~Gat~vl~~g~p--- 432 (728)
T PLN03052 357 AFTNILFSSGTTGEPKAIPWTQLTPLRAAADAWAHLDIRKGDIVCWPTNLGWMMGPWL-VYASLLNGATLALYNGSP--- 432 (728)
T ss_pred CcEEEEecCCCCCCCceEEECchHHHHHHHHHHHhcCCCCCcEEEECCCcHHHhHHHH-HHHHHHhCCEEEEeCCCC---
Confidence 5799999999999999999999988776655556678999999999999999988865 789999999999987432
Q ss_pred ChHHHHHHHhccceeeEEecccchhhHHhhHHhh--h-hhcccccccc------------------cccccccchhccCC
Q psy14342 81 NPALWLSAVSQYRVRDTFCSYGMLAGIKMSHAAV--T-SLCRSMKLAC------------------ELYPSRHIALCLDP 139 (316)
Q Consensus 81 ~~~~~~~~~~~~~~t~~~~~~~~~~~l~~~~~~~--~-~~~~~~~ls~------------------e~~~~yG~te~~~~ 139 (316)
.+..++++++++++|++..+|+++..+....... + +..+.+-..+ .+.+.||+||++..
T Consensus 433 ~~~~~~~~i~~~~vT~l~~~Pt~l~~l~~~~~~~~~dlssLr~i~s~Ge~l~~~~~~~~~~~~~~~~i~~~yG~TE~~~~ 512 (728)
T PLN03052 433 LGRGFAKFVQDAKVTMLGTVPSIVKTWKNTNCMAGLDWSSIRCFGSTGEASSVDDYLWLMSRAGYKPIIEYCGGTELGGG 512 (728)
T ss_pred CCChHHHHHHHHCCCEEEECHHHHHHHHhcCCcccCChhheeEEEecCCCCCHHHHHHHHHhcCCCCeEeeccChhhCcc
Confidence 2446899999999999999999887664432100 0 0011111111 15678999999754
Q ss_pred CCCCCceEEEEeeeccCcccccCCCce-EEecCc-------------eEEecC-----CCcccCC---------C-----
Q psy14342 140 YCGLGFALWVLSSVYSGHHSILIPPSE-VEVNPA-------------LWLSAV-----SQYRVRD---------T----- 186 (316)
Q Consensus 140 ~~~~~~~~~~~~~~~~g~~~~~~~g~~-~i~d~~-------------l~v~~~-----~gY~~~~---------~----- 186 (316)
+....+. .....|..+.|.+|++ .++|++ |+++++ .+||++. +
T Consensus 513 ~~~~~~~----~~~~~g~~g~p~~g~~v~v~d~~g~~v~~g~~~~GEL~v~~~~~~~~~~~~~~~~~~~yf~~~p~~~g~ 588 (728)
T PLN03052 513 FVTGSLL----QPQAFAAFSTPAMGCKLFILDDSGNPYPDDAPCTGELALFPLMFGASSTLLNADHYKVYFKGMPVFNGK 588 (728)
T ss_pred cccCCCC----CCCCCCccccCCCCceEEEECCCCCCCCCCCCceEEEEEeCCCCCCCccccCchhhhhhhhcCCCCCCC
Confidence 3322210 1112233445789999 877743 666654 2333321 1
Q ss_pred --cCCCCceeeec-Cc---CCcccceeEECCcccChHhHHHHHHHhccccceeEEEeeC------CcEEEEEEec--CCc
Q psy14342 187 --FCSCNGALYQG-AE---RLALDETIMLRGMRYHPIDIENSVMRAHKKIAECAVFTWT------NLLVVVVELD--GNE 252 (316)
Q Consensus 187 --~~~~d~g~~~~-g~---~GR~dd~i~~~G~~v~p~eIE~~l~~~~p~v~~~~v~~~~------~~~~~~v~~~--~~~ 252 (316)
..++|.+++++ |. +||.||+||++|+||+|.|||++|...||.|.+++|+++. +.++++++++ ++.
T Consensus 589 ~~~~tGDl~~~d~dG~l~i~GR~Dd~I~~~G~rI~~~EIE~~l~~~~p~V~eaaVvg~~d~~~g~e~~~afVvl~~~~g~ 668 (728)
T PLN03052 589 ILRRHGDIFERTSGGYYRAHGRADDTMNLGGIKVSSVEIERVCNAADESVLETAAIGVPPPGGGPEQLVIAAVLKDPPGS 668 (728)
T ss_pred EEEecCceEEECCCCeEEEEecCCCEEeeCCEEeCHHHHHHHHHhcCCCcceEEEEeeecCCCCcEEEEEEEEEecCCCC
Confidence 12336666654 43 9999999999999999999999996339999999999882 3577777765 322
Q ss_pred -hhhcchHHHHHHHHHHhcCe--eecEEEEEcCCCcccCCCchhhHHHHHHHHHc
Q psy14342 253 -SEALDLVPLVTNAVLEEHHL--IVGVAVVVDPGVVPINSRGEKQRMHLRDGFLA 304 (316)
Q Consensus 253 -~~~~~l~~~~~~~l~~~~~~--~~~~~~~~~~~~lP~t~~gKi~r~~l~~~~~~ 304 (316)
.+.++|.+++++.+.+.... .+..+.+++ .||+|.+||++|++|++.+.+
T Consensus 669 ~~~~~~L~~~i~~~i~~~l~~~~~p~~i~~v~--~lP~T~sGKi~Rr~Lr~~~~~ 721 (728)
T PLN03052 669 NPDLNELKKIFNSAIQKKLNPLFKVSAVVIVP--SFPRTASNKVMRRVLRQQLAQ 721 (728)
T ss_pred CCCHHHHHHHHHHHHHhhcCCccCCCEEEEcC--CCCCCCchHHHHHHHHHHHHh
Confidence 23467888888777754432 224555555 899999999999999998875
|
|
| >PLN02614 long-chain acyl-CoA synthetase | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.6e-39 Score=312.76 Aligned_cols=302 Identities=11% Similarity=0.040 Sum_probs=214.2
Q ss_pred CeEEEEeccCCCCCceEEEEeHHHHHHHHHHHHHHh-----cCCCCCceEEecCCcCChhhhHHHHhhhhcCceeeeeCC
Q psy14342 1 MLAYLDFSVSTTGMLAGIKMSHAAVTSLCRSMKLAC-----ELYPSRHIALCLDPYCGLGFALWVLSSVYSGHHSILIPP 75 (316)
Q Consensus 1 ~~a~i~~TSGTTG~PK~V~~t~~~l~~~~~~~~~~~-----~~~~~d~~l~~~p~~h~~g~~~~~~~~l~~G~~~v~~~~ 75 (316)
|+++|+|||||||.||||++||+++...+......+ ++.++|++++++|++|.+++.. .+..+..|+++++.+
T Consensus 224 d~a~I~yTSGTTG~PKGV~lth~nl~~~~~~~~~~~~~~~~~~~~~d~~l~~lPl~H~~~~~~-~~~~l~~G~~v~~~~- 301 (666)
T PLN02614 224 DICTIMYTSGTTGDPKGVMISNESIVTLIAGVIRLLKSANAALTVKDVYLSYLPLAHIFDRVI-EECFIQHGAAIGFWR- 301 (666)
T ss_pred ceEEEEEcCCCCCCCcEEEEecHHHHHHHHHHHhhccccccCCCCCcEEEEeccHHHHHHHHH-HHHHHHhCCEEEEeC-
Confidence 689999999999999999999999998776655544 5678899999999999999875 567788999998863
Q ss_pred cccccChHHHHHHHhccceeeEEecccchhhHHhhHHh-h----------------------------------------
Q psy14342 76 SEVEVNPALWLSAVSQYRVRDTFCSYGMLAGIKMSHAA-V---------------------------------------- 114 (316)
Q Consensus 76 ~~~~~~~~~~~~~~~~~~~t~~~~~~~~~~~l~~~~~~-~---------------------------------------- 114 (316)
.++..+++.++++++|+++.+|.++..+...... .
T Consensus 302 ----~~~~~~~~~i~~~~~T~~~~vP~~~~~l~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~ 377 (666)
T PLN02614 302 ----GDVKLLIEDLGELKPTIFCAVPRVLDRVYSGLQKKLSDGGFLKKFVFDSAFSYKFGNMKKGQSHVEASPLCDKLVF 377 (666)
T ss_pred ----CCHHHHHHHHHHhCCeEEEecHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHHHcCCCCcccchHHHHHHH
Confidence 2678899999999999999999988755421100 0
Q ss_pred h---hhc-cccc--ccc------------------cccccccchhccCCCCCCCceEEEEeeeccCcccccCCCce-EEe
Q psy14342 115 T---SLC-RSMK--LAC------------------ELYPSRHIALCLDPYCGLGFALWVLSSVYSGHHSILIPPSE-VEV 169 (316)
Q Consensus 115 ~---~~~-~~~~--ls~------------------e~~~~yG~te~~~~~~~~~~~~~~~~~~~~g~~~~~~~g~~-~i~ 169 (316)
. ... ..++ +++ .+++.||+||++.......+. .....|+.|.|+||++ +++
T Consensus 378 ~~~~~~lg~~lr~~~~Gga~l~~~~~~~~~~~~~~~i~~~YG~TE~~~~~~~~~~~----~~~~~gsvG~p~pg~evki~ 453 (666)
T PLN02614 378 NKVKQGLGGNVRIILSGAAPLASHVESFLRVVACCHVLQGYGLTESCAGTFVSLPD----ELDMLGTVGPPVPNVDIRLE 453 (666)
T ss_pred HHHHHHhCCcEEEEEEcCCCCCHHHHHHHHHhcCCCEEeeCchHhhhhheeeeccc----cCCcCCcccCcCCceEEEEe
Confidence 0 000 0111 111 277899999986432221111 0112345566899999 887
Q ss_pred c--------------CceEEecC---CCcccCCCcCCC----------Cceeeec-Cc---CCcccceeEE-CCcccChH
Q psy14342 170 N--------------PALWLSAV---SQYRVRDTFCSC----------NGALYQG-AE---RLALDETIML-RGMRYHPI 217 (316)
Q Consensus 170 d--------------~~l~v~~~---~gY~~~~~~~~~----------d~g~~~~-g~---~GR~dd~i~~-~G~~v~p~ 217 (316)
| ++|+++|| .|||++++.|.. |.|++++ |. +||.||+||+ +|++|+|.
T Consensus 454 d~~~~~~~~~~~g~~GEl~vrGp~v~~GY~~~pe~T~~~f~dGw~~TGDlg~~d~dG~l~i~gR~kd~ik~~~G~~V~p~ 533 (666)
T PLN02614 454 SVPEMEYDALASTPRGEICIRGKTLFSGYYKREDLTKEVLIDGWLHTGDVGEWQPNGSMKIIDRKKNIFKLSQGEYVAVE 533 (666)
T ss_pred eecccCcccCCCCCCceEEEcCCcccccccCCHHHhhhhhccCCcccceEEEEcCCCCEEEEEcchhceecCCCeeecHH
Confidence 6 12999999 899999887643 5555543 33 9999999996 79999999
Q ss_pred hHHHHHHHhccccceeEEEeeCC--cEEEEEEecCCch-----------------hhcchHHHHHHHHHH--------hc
Q psy14342 218 DIENSVMRAHKKIAECAVFTWTN--LLVVVVELDGNES-----------------EALDLVPLVTNAVLE--------EH 270 (316)
Q Consensus 218 eIE~~l~~~~p~v~~~~v~~~~~--~~~~~v~~~~~~~-----------------~~~~l~~~~~~~l~~--------~~ 270 (316)
|||++|.+ ||.|.+|+|+|.+. .+++++.+..... ...++.+.+.+.+.+ .+
T Consensus 534 eIE~~l~~-~p~V~~~~V~g~~~~~~l~alvv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~ 612 (666)
T PLN02614 534 NIENIYGE-VQAVDSVWVYGNSFESFLVAIANPNQQILERWAAENGVSGDYNALCQNEKAKEFILGELVKMAKEKKMKGF 612 (666)
T ss_pred HHHHHHhc-CCCeeEEEEEecCCcceEEEEEeCCHHHHHHHHHhcCCCcCHHHHhcCHHHHHHHHHHHHHHHHHcCCCCc
Confidence 99999999 99999999999974 4677776653210 012233333333321 12
Q ss_pred CeeecEEEEEcCC-C---cccCCCchhhHHHHHHHHHcCCCCcchhhcc
Q psy14342 271 HLIVGVAVVVDPG-V---VPINSRGEKQRMHLRDGFLADQLDPIYVAYN 315 (316)
Q Consensus 271 ~~~~~~~~~~~~~-~---lP~t~~gKi~r~~l~~~~~~~~~~~~~~~~~ 315 (316)
..+ ..+.++... + =.+|+++|++|..+.+.|++ .++.+|+.+|
T Consensus 613 e~i-~~~~l~~~~f~~~ng~lTpt~K~kR~~i~~~y~~-~i~~ly~~~~ 659 (666)
T PLN02614 613 EII-KAIHLDPVPFDMERDLLTPTFKKKRPQLLKYYQS-VIDEMYKTTN 659 (666)
T ss_pred cee-eEEEEeCCCCCCcCCcCCHhhhhhHHHHHHHHHH-HHHHHHHhhh
Confidence 222 344444421 1 24899999999999999997 9999998765
|
|
| >PLN02574 4-coumarate--CoA ligase-like | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-38 Score=303.53 Aligned_cols=294 Identities=15% Similarity=0.180 Sum_probs=216.1
Q ss_pred CeEEEEeccCCCCCceEEEEeHHHHHHHHHHHHH----HhcC-CCCCceEEecCCcCChhhhHHHHhhhhcCceeeeeCC
Q psy14342 1 MLAYLDFSVSTTGMLAGIKMSHAAVTSLCRSMKL----ACEL-YPSRHIALCLDPYCGLGFALWVLSSVYSGHHSILIPP 75 (316)
Q Consensus 1 ~~a~i~~TSGTTG~PK~V~~t~~~l~~~~~~~~~----~~~~-~~~d~~l~~~p~~h~~g~~~~~~~~l~~G~~~v~~~~ 75 (316)
|+++|+|||||||.||+|++||+++...+..+.. .+.. ...++++.++|++|.+|+...++.++..|+++++.++
T Consensus 199 ~~a~i~~TSGTTG~PKgV~~sh~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~pl~h~~g~~~~~~~~l~~G~~~v~~~~ 278 (560)
T PLN02574 199 DVAAIMYSSGTTGASKGVVLTHRNLIAMVELFVRFEASQYEYPGSDNVYLAALPMFHIYGLSLFVVGLLSLGSTIVVMRR 278 (560)
T ss_pred CEEEEEcCCCccCCCcEEEEeHHHHHHHHHHHHhccccccccCCCCcEEEEecchHHHHHHHHHHHHHHhcCCEEEEecC
Confidence 5799999999999999999999999887766543 2222 2457888999999999998877888889999998764
Q ss_pred cccccChHHHHHHHhccceeeEEecccchhhHHhhHHhh----hhhcccccccc------------------cccccccc
Q psy14342 76 SEVEVNPALWLSAVSQYRVRDTFCSYGMLAGIKMSHAAV----TSLCRSMKLAC------------------ELYPSRHI 133 (316)
Q Consensus 76 ~~~~~~~~~~~~~~~~~~~t~~~~~~~~~~~l~~~~~~~----~~~~~~~~ls~------------------e~~~~yG~ 133 (316)
. ++..+++.++++++|++..+|+++..+....... ....+.+-..+ .+++.||+
T Consensus 279 ~----~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~lr~~~~gg~~l~~~~~~~~~~~~~~~~v~~~YG~ 354 (560)
T PLN02574 279 F----DASDMVKVIDRFKVTHFPVVPPILMALTKKAKGVCGEVLKSLKQVSCGAAPLSGKFIQDFVQTLPHVDFIQGYGM 354 (560)
T ss_pred C----CHHHHHHHHHHcCCeEEecCCHHHHHHHhCccccccCccccceEEEEecccCCHHHHHHHHHHCCCCcEEecccc
Confidence 3 6889999999999999999999887665433210 00011111111 27889999
Q ss_pred hhccCCCCCCCceEEEEeeeccCcccccCCCce-EEecCc------------eEEecC---CCcccCCCcCCC-------
Q psy14342 134 ALCLDPYCGLGFALWVLSSVYSGHHSILIPPSE-VEVNPA------------LWLSAV---SQYRVRDTFCSC------- 190 (316)
Q Consensus 134 te~~~~~~~~~~~~~~~~~~~~g~~~~~~~g~~-~i~d~~------------l~v~~~---~gY~~~~~~~~~------- 190 (316)
||++......... ......++.+.++||++ +++|++ ||++|+ .|||++++.+..
T Consensus 355 tE~~~~~~~~~~~---~~~~~~~~vG~~~~~~~v~i~d~~~g~~~~~g~~Gei~v~g~~~~~GY~~~~~~t~~~~~~~g~ 431 (560)
T PLN02574 355 TESTAVGTRGFNT---EKLSKYSSVGLLAPNMQAKVVDWSTGCLLPPGNCGELWIQGPGVMKGYLNNPKATQSTIDKDGW 431 (560)
T ss_pred cccCceeecCCCc---cccCCCCceeeeCCCcEEEEEeCCCCcCCCCCCCeEEEEECcchhhhhcCChhHhhhhccCCCC
Confidence 9986432211100 01112234556899999 888742 999999 899998876532
Q ss_pred ----Cceeeec-Cc---CCcccceeEECCcccChHhHHHHHHHhccccceeEEEeeC-----CcEEEEEEecCCc-hhhc
Q psy14342 191 ----NGALYQG-AE---RLALDETIMLRGMRYHPIDIENSVMRAHKKIAECAVFTWT-----NLLVVVVELDGNE-SEAL 256 (316)
Q Consensus 191 ----d~g~~~~-g~---~GR~dd~i~~~G~~v~p~eIE~~l~~~~p~v~~~~v~~~~-----~~~~~~v~~~~~~-~~~~ 256 (316)
|.|++++ |. .||.||+||++|++|+|.|||++|.+ ||.|.+++|++.. +.+++++...+.. .+.+
T Consensus 432 ~~TGDlg~~~~~G~l~i~GR~~d~i~~~G~~v~~~eiE~~l~~-~~~V~~~~v~~~~~~~~g~~~~a~v~~~~~~~~~~~ 510 (560)
T PLN02574 432 LRTGDIAYFDEDGYLYIVDRLKEIIKYKGFQIAPADLEAVLIS-HPEIIDAAVTAVPDKECGEIPVAFVVRRQGSTLSQE 510 (560)
T ss_pred cccceEEEEECCCeEEEEecchhheEECCEEECHHHHHHHHHh-CCCcceEEEEccccCCCCcceEEEEEeCCCCCCCHH
Confidence 4555543 33 99999999999999999999999999 9999999999873 3466666655432 2345
Q ss_pred chHHHHHHHHHHhcCeeecEEEEEcCCCcccCCCchhhHHHHHHHHHcCC
Q psy14342 257 DLVPLVTNAVLEEHHLIVGVAVVVDPGVVPINSRGEKQRMHLRDGFLADQ 306 (316)
Q Consensus 257 ~l~~~~~~~l~~~~~~~~~~~~~~~~~~lP~t~~gKi~r~~l~~~~~~~~ 306 (316)
++.+.+++++. .+..+ ..+.+++ ++|+|++||++|+.|++.+.+..
T Consensus 511 ~l~~~~~~~l~-~~~~p-~~v~~v~--~iP~t~~GKi~r~~L~~~~~~~~ 556 (560)
T PLN02574 511 AVINYVAKQVA-PYKKV-RKVVFVQ--SIPKSPAGKILRRELKRSLTNSV 556 (560)
T ss_pred HHHHHHHHhcc-CcccC-cEEEEee--ccCCCCcchhhHHHHHHHHhhcc
Confidence 77788877777 44444 4566665 89999999999999999987643
|
|
| >PRK07788 acyl-CoA synthetase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=8e-39 Score=304.89 Aligned_cols=286 Identities=14% Similarity=0.083 Sum_probs=217.0
Q ss_pred CeEEEEeccCCCCCceEEEEeHHHHHHHHHHHHHHhcCCCCCceEEecCCcCChhhhHHHHhhhhcCceeeeeCCccccc
Q psy14342 1 MLAYLDFSVSTTGMLAGIKMSHAAVTSLCRSMKLACELYPSRHIALCLDPYCGLGFALWVLSSVYSGHHSILIPPSEVEV 80 (316)
Q Consensus 1 ~~a~i~~TSGTTG~PK~V~~t~~~l~~~~~~~~~~~~~~~~d~~l~~~p~~h~~g~~~~~~~~l~~G~~~v~~~~~~~~~ 80 (316)
++++++|||||||.||+|.++|+++...+......+++.++|+++.+.|++|.+|+.. ++.++..|+++++... .
T Consensus 208 ~~~~i~~TSGTTG~PKgv~~s~~~~~~~~~~~~~~~~~~~~d~~~~~~p~~~~~g~~~-~~~~l~~G~~~v~~~~----~ 282 (549)
T PRK07788 208 PGGIVILTSGTTGTPKGAPRPEPSPLAPLAGLLSRVPFRAGETTLLPAPMFHATGWAH-LTLAMALGSTVVLRRR----F 282 (549)
T ss_pred CCcEEEECCCCCCCCCEEeccCccHHHHHHHHHhhCCCCcCCeEEEccchHHHHHHHH-HHHHHHhCCEEEECCC----C
Confidence 4679999999999999999999999988888888888999999999999999999876 6789999999988743 2
Q ss_pred ChHHHHHHHhccceeeEEecccchhhHHhhHHh--hh---hhcccccccc-----------------cccccccchhccC
Q psy14342 81 NPALWLSAVSQYRVRDTFCSYGMLAGIKMSHAA--VT---SLCRSMKLAC-----------------ELYPSRHIALCLD 138 (316)
Q Consensus 81 ~~~~~~~~~~~~~~t~~~~~~~~~~~l~~~~~~--~~---~~~~~~~ls~-----------------e~~~~yG~te~~~ 138 (316)
+|..+++.++++++|+++.+|+++..+...... .. ...+.+-.++ .+++.||+||++.
T Consensus 283 ~~~~~~~~i~~~~vt~~~~~P~~~~~l~~~~~~~~~~~~~~~lr~i~~gG~~l~~~~~~~~~~~~~~~l~~~YG~TE~~~ 362 (549)
T PRK07788 283 DPEATLEDIAKHKATALVVVPVMLSRILDLGPEVLAKYDTSSLKIIFVSGSALSPELATRALEAFGPVLYNLYGSTEVAF 362 (549)
T ss_pred CHHHHHHHHHHhCCcEEEEHHHHHHHHHhCcccccCCCCCCceeEEEEeCCCCCHHHHHHHHHHhCccceeccCcchhch
Confidence 688999999999999999999988766543322 00 0011111112 2888999999864
Q ss_pred CCCCCCceEEEEeeeccCcccccCCCce-EEecCc-----------eEEecC---CCcccCCCcC-------CCCceeee
Q psy14342 139 PYCGLGFALWVLSSVYSGHHSILIPPSE-VEVNPA-----------LWLSAV---SQYRVRDTFC-------SCNGALYQ 196 (316)
Q Consensus 139 ~~~~~~~~~~~~~~~~~g~~~~~~~g~~-~i~d~~-----------l~v~~~---~gY~~~~~~~-------~~d~g~~~ 196 (316)
........ .....++.|.+++|++ +++|++ |+++|+ .||++++... ++|.|+++
T Consensus 363 ~~~~~~~~----~~~~~~~vG~~~~~~~~~i~d~~~~~~~~g~~Gel~v~g~~~~~gY~~~~~~~~~~g~~~TGDl~~~~ 438 (549)
T PRK07788 363 ATIATPED----LAEAPGTVGRPPKGVTVKILDENGNEVPRGVVGRIFVGNGFPFEGYTDGRDKQIIDGLLSSGDVGYFD 438 (549)
T ss_pred hhccChhh----hhhcCCCcccCCCCcEEEEECCCcCCCCCCCeEEEEEeCCCccccccCCCcccccCCceecCceEEEc
Confidence 32211100 0112234556899999 888754 999999 8999886542 33666664
Q ss_pred c-Cc---CCcccceeEECCcccChHhHHHHHHHhccccceeEEEeeC-----CcEEEEEEecCCc-hhhcchHHHHHHHH
Q psy14342 197 G-AE---RLALDETIMLRGMRYHPIDIENSVMRAHKKIAECAVFTWT-----NLLVVVVELDGNE-SEALDLVPLVTNAV 266 (316)
Q Consensus 197 ~-g~---~GR~dd~i~~~G~~v~p~eIE~~l~~~~p~v~~~~v~~~~-----~~~~~~v~~~~~~-~~~~~l~~~~~~~l 266 (316)
+ |. .||.||+||++|++|+|.|||++|.+ ||.|.+++|++.. +.++++++..+.. .+.+++.+.+++.+
T Consensus 439 ~~g~l~~~GR~dd~i~~~G~~v~p~eIE~~l~~-~~~V~~~~v~~~~~~~~g~~~~a~vv~~~~~~~~~~~l~~~~~~~l 517 (549)
T PRK07788 439 EDGLLFVDGRDDDMIVSGGENVFPAEVEDLLAG-HPDVVEAAVIGVDDEEFGQRLRAFVVKAPGAALDEDAIKDYVRDNL 517 (549)
T ss_pred CCCCEEEeccCcceEEECCEEECHHHHHHHHHh-CCCeeEEEEECCcCcccccEEEEEEEeCCCCCCCHHHHHHHHHHhh
Confidence 4 33 89999999999999999999999999 9999999999873 4577777665532 34467888888877
Q ss_pred HHhcCeeecEEEEEcCCCcccCCCchhhHHHHHH
Q psy14342 267 LEEHHLIVGVAVVVDPGVVPINSRGEKQRMHLRD 300 (316)
Q Consensus 267 ~~~~~~~~~~~~~~~~~~lP~t~~gKi~r~~l~~ 300 (316)
. .+..| ..+.+++ ++|+|++||++|++|++
T Consensus 518 ~-~~~~P-~~i~~v~--~lP~t~~GKi~r~~L~~ 547 (549)
T PRK07788 518 A-RYKVP-RDVVFLD--ELPRNPTGKVLKRELRE 547 (549)
T ss_pred h-cCCCC-cEEEEeC--CCCCCCCcCEeHHHhhc
Confidence 7 55555 4566665 89999999999999975
|
|
| >PRK06060 acyl-CoA synthetase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-38 Score=311.56 Aligned_cols=290 Identities=19% Similarity=0.190 Sum_probs=211.9
Q ss_pred CeEEEEeccCCCCCceEEEEeHHHHHHHHHHHH-HHhcCCCCCceEEecCCcCChhhhHHHHhhhhcCceeeeeCCcccc
Q psy14342 1 MLAYLDFSVSTTGMLAGIKMSHAAVTSLCRSMK-LACELYPSRHIALCLDPYCGLGFALWVLSSVYSGHHSILIPPSEVE 79 (316)
Q Consensus 1 ~~a~i~~TSGTTG~PK~V~~t~~~l~~~~~~~~-~~~~~~~~d~~l~~~p~~h~~g~~~~~~~~l~~G~~~v~~~~~~~~ 79 (316)
+++||+|||||||.||||.++|+++......+. ..+++.++|+.+.+.|++|.+++...++.++..|+++++.+..
T Consensus 146 ~~a~il~TSGSTG~PKgV~~sh~~~~~~~~~~~~~~~~~~~~d~~l~~~~~~~~~~~~~~~~~~l~~G~~~v~~~~~--- 222 (705)
T PRK06060 146 ALAYATYTSGTTGPPKAAIHRHADPLTFVDAMCRKALRLTPEDTGLCSARMYFAYGLGNSVWFPLATGGSAVINSAP--- 222 (705)
T ss_pred CeEEEEECCCCCCCCcEEEEccccHHHHHHHHHHHhhCCCCcceeEEeccchhhcchhHHHHHHHhcCCEEEEeCCC---
Confidence 579999999999999999999999988776654 4678888999999999999999877788999999999987532
Q ss_pred cChHHHHHHHhccceeeEEecccchhhHHhhHHhhh-hhcccccccc------------------cccccccchhccCCC
Q psy14342 80 VNPALWLSAVSQYRVRDTFCSYGMLAGIKMSHAAVT-SLCRSMKLAC------------------ELYPSRHIALCLDPY 140 (316)
Q Consensus 80 ~~~~~~~~~~~~~~~t~~~~~~~~~~~l~~~~~~~~-~~~~~~~ls~------------------e~~~~yG~te~~~~~ 140 (316)
.++..++..++++++++++.+|+++..+........ ...+.+-..+ .+++.||+||++...
T Consensus 223 ~~~~~~~~~i~~~~~t~~~~~P~~l~~l~~~~~~~~~~slr~i~~gGe~l~~~~~~~~~~~~~~~~~~~~YG~tE~~~~~ 302 (705)
T PRK06060 223 VTPEAAAILSARFGPSVLYGVPNFFARVIDSCSPDSFRSLRCVVSAGEALELGLAERLMEFFGGIPILDGIGSTEVGQTF 302 (705)
T ss_pred CCHHHHHHHHHhcCCeEEeeHHHHHHHHHHhcccccccceeEEEEecCcCCHHHHHHHHHHcCCCceEeeeeccccCceE
Confidence 257778899999999999999998765543221100 0011111111 278899999986432
Q ss_pred CCCCceEEEEeeeccCcccccCCCce-EEecCc-----------eEEecC---CCcccCCCcCCC--------Cceeeec
Q psy14342 141 CGLGFALWVLSSVYSGHHSILIPPSE-VEVNPA-----------LWLSAV---SQYRVRDTFCSC--------NGALYQG 197 (316)
Q Consensus 141 ~~~~~~~~~~~~~~~g~~~~~~~g~~-~i~d~~-----------l~v~~~---~gY~~~~~~~~~--------d~g~~~~ 197 (316)
..... .....++.|.++++++ +++|++ |+++|+ .|||++++.+.. |.|++++
T Consensus 303 ~~~~~-----~~~~~~~iG~p~~~~~v~i~d~~g~~~~~g~~GEl~i~g~~v~~GY~~~~~~~~~~~~~~~TGDl~~~~~ 377 (705)
T PRK06060 303 VSNRV-----DEWRLGTLGRVLPPYEIRVVAPDGTTAGPGVEGDLWVRGPAIAKGYWNRPDSPVANEGWLDTRDRVCIDS 377 (705)
T ss_pred EeccC-----CCCCcCcccccCCCcEEEEECCCCCCCCCCCceEEEEccchhhhhhhCCCcccccCCCcEECCeeEEECC
Confidence 21111 0112234556899999 887754 999999 899998765432 5555543
Q ss_pred -Cc---CCcccceeEECCcccChHhHHHHHHHhccccceeEEEeeC-----CcEEEEEEecCCchhh----cchHHHHHH
Q psy14342 198 -AE---RLALDETIMLRGMRYHPIDIENSVMRAHKKIAECAVFTWT-----NLLVVVVELDGNESEA----LDLVPLVTN 264 (316)
Q Consensus 198 -g~---~GR~dd~i~~~G~~v~p~eIE~~l~~~~p~v~~~~v~~~~-----~~~~~~v~~~~~~~~~----~~l~~~~~~ 264 (316)
|. .||.||+||++|+||+|.|||++|.+ ||.|.+++|++.. +.++++++........ .++.+.+++
T Consensus 378 dG~l~~~GR~dd~ik~~G~~v~~~eIE~~l~~-~~~V~~a~vv~~~~~~~~~~~~a~vv~~~~~~~~~~~~~~i~~~l~~ 456 (705)
T PRK06060 378 DGWVTYRCRADDTEVIGGVNVDPREVERLIIE-DEAVAEAAVVAVRESTGASTLQAFLVATSGATIDGSVMRDLHRGLLN 456 (705)
T ss_pred CceEEEecccCceEEECCEEECHHHHHHHHHh-CCCeeEEEEEeecCccCCeeEEEEEEeccccCcChHHHHHHHHHHHH
Confidence 33 99999999999999999999999999 9999999999884 3566666655432211 245555555
Q ss_pred HHHHhcCeeecEEEEEcCCCcccCCCchhhHHHHHHHHH
Q psy14342 265 AVLEEHHLIVGVAVVVDPGVVPINSRGEKQRMHLRDGFL 303 (316)
Q Consensus 265 ~l~~~~~~~~~~~~~~~~~~lP~t~~gKi~r~~l~~~~~ 303 (316)
.+. .+..| ..+.+++ +||+|++||++|++|++.+.
T Consensus 457 ~L~-~~~~P-~~i~~v~--~iP~t~~GKidr~~L~~~~~ 491 (705)
T PRK06060 457 RLS-AFKVP-HRFAVVD--RLPRTPNGKLVRGALRKQSP 491 (705)
T ss_pred hCC-CCcCC-cEEEEee--cCCCCcchhhHHHHHHhhcc
Confidence 555 44444 4555655 89999999999999998764
|
|
| >PRK05852 acyl-CoA synthetase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.6e-38 Score=299.41 Aligned_cols=296 Identities=16% Similarity=0.156 Sum_probs=220.0
Q ss_pred CeEEEEeccCCCCCceEEEEeHHHHHHHHHHHHHHhcCCCCCceEEecCCcCChhhhHHHHhhhhcCceeeeeCCccccc
Q psy14342 1 MLAYLDFSVSTTGMLAGIKMSHAAVTSLCRSMKLACELYPSRHIALCLDPYCGLGFALWVLSSVYSGHHSILIPPSEVEV 80 (316)
Q Consensus 1 ~~a~i~~TSGTTG~PK~V~~t~~~l~~~~~~~~~~~~~~~~d~~l~~~p~~h~~g~~~~~~~~l~~G~~~v~~~~~~~~~ 80 (316)
|+++|+|||||||.||+|.++|+++...+......+++.++|++++++|++|.+|++..++.++..|+++++..... .
T Consensus 177 ~~a~il~TSGTTG~PKgv~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~p~~~~~g~~~~~~~~l~~g~~~~~~~~~~--~ 254 (534)
T PRK05852 177 DDAMIMFTGGTTGLPKMVPWTHANIASSVRAIITGYRLSPRDATVAVMPLYHGHGLIAALLATLASGGAVLLPARGR--F 254 (534)
T ss_pred CceEEEeCCCCCCCCcEEEecHHHHHHHHHHHHHHhCCCCcceEEEecCcchhHHHHHHHHHHHhcCCeEEeCCCcC--c
Confidence 57899999999999999999999999888888888899999999999999999999888889999999888754332 2
Q ss_pred ChHHHHHHHhccceeeEEecccchhhHHhhHHhh-----hhhcccccccc-----------------cccccccchhccC
Q psy14342 81 NPALWLSAVSQYRVRDTFCSYGMLAGIKMSHAAV-----TSLCRSMKLAC-----------------ELYPSRHIALCLD 138 (316)
Q Consensus 81 ~~~~~~~~~~~~~~t~~~~~~~~~~~l~~~~~~~-----~~~~~~~~ls~-----------------e~~~~yG~te~~~ 138 (316)
++..+++.++++++|.++.+|.++..+....... ....+.+-.++ ++++.||+||++.
T Consensus 255 ~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~lr~i~~~G~~~~~~~~~~~~~~~~~~v~~~YG~tE~~~ 334 (534)
T PRK05852 255 SAHTFWDDIKAVGATWYTAVPTIHQILLERAATEPSGRKPAALRFIRSCSAPLTAETAQALQTEFAAPVVCAFGMTEATH 334 (534)
T ss_pred CHHHHHHHHHHcCCcEEEcChHHHHHHHhhcccccccccCCCeeEEEECCCCCCHHHHHHHHHHhCCChhhccCccccch
Confidence 5778999999999999999999887665433211 00011111111 3888999999875
Q ss_pred CCCCCCceEE---EEeeeccCcccccCCCce-EEecCc-----------eEEecC---CCcccCCCcCCC----------
Q psy14342 139 PYCGLGFALW---VLSSVYSGHHSILIPPSE-VEVNPA-----------LWLSAV---SQYRVRDTFCSC---------- 190 (316)
Q Consensus 139 ~~~~~~~~~~---~~~~~~~g~~~~~~~g~~-~i~d~~-----------l~v~~~---~gY~~~~~~~~~---------- 190 (316)
.......... .......|..+ ..+|.+ +++|++ |+++|+ .|||++++.+..
T Consensus 335 ~~~~~~~~~~~~~~~~~~~~g~~g-~~~g~~~~i~d~~g~~~~~g~~Gel~v~g~~v~~gY~~~~~~t~~~~~~g~~~TG 413 (534)
T PRK05852 335 QVTTTQIEGIGQTENPVVSTGLVG-RSTGAQIRIVGSDGLPLPAGAVGEVWLRGTTVVRGYLGDPTITAANFTDGWLRTG 413 (534)
T ss_pred hhhcCCccccccccCcccccccCC-CCCCCeEEEECCCCCCCCCCCceEEEEecCcccchhcCCcccchhhhcCCCcccC
Confidence 3322111000 00001122211 168888 888764 999999 899998766532
Q ss_pred Cceeeec-Cc---CCcccceeEECCcccChHhHHHHHHHhccccceeEEEeeC-----CcEEEEEEecCCc-hhhcchHH
Q psy14342 191 NGALYQG-AE---RLALDETIMLRGMRYHPIDIENSVMRAHKKIAECAVFTWT-----NLLVVVVELDGNE-SEALDLVP 260 (316)
Q Consensus 191 d~g~~~~-g~---~GR~dd~i~~~G~~v~p~eIE~~l~~~~p~v~~~~v~~~~-----~~~~~~v~~~~~~-~~~~~l~~ 260 (316)
|.|++++ |. .||.||+||++|.+|+|.|||++|.+ ||.|.+|+|++.. +.+++++...+.. .+.+++.+
T Consensus 414 D~~~~d~dG~l~~~gR~~d~i~~~G~~v~~~~iE~~l~~-~~~V~~~~v~g~~~~~~g~~~~~~vv~~~~~~~~~~~i~~ 492 (534)
T PRK05852 414 DLGSLSAAGDLSIRGRIKELINRGGEKISPERVEGVLAS-HPNVMEAAVFGVPDQLYGEAVAAVIVPRESAPPTAEELVQ 492 (534)
T ss_pred ceEEEeCCCcEEEEecchhhEEECCEEECHHHHHHHHHh-CCCeeeEEEEecCCcCcCceEEEEEEECCCCCCCHHHHHH
Confidence 5666654 43 99999999999999999999999999 9999999999984 3466666554432 34467888
Q ss_pred HHHHHHHHhcCeeecEEEEEcCCCcccCCCchhhHHHHHHHHHc
Q psy14342 261 LVTNAVLEEHHLIVGVAVVVDPGVVPINSRGEKQRMHLRDGFLA 304 (316)
Q Consensus 261 ~~~~~l~~~~~~~~~~~~~~~~~~lP~t~~gKi~r~~l~~~~~~ 304 (316)
++++++. .+..| ..+.+++ ++|+|++||++|++|++.|.+
T Consensus 493 ~~~~~l~-~~~~P-~~i~~v~--~iP~t~~GKi~r~~L~~~~~~ 532 (534)
T PRK05852 493 FCRERLA-AFEIP-ASFQEAS--GLPHTAKGSLDRRAVAEQFGH 532 (534)
T ss_pred HHHHhcc-cccCC-eEEEEhh--hcCCCCCccccHHHHHHHhcc
Confidence 8887776 55554 3555555 899999999999999999865
|
|
| >PRK08314 long-chain-fatty-acid--CoA ligase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.1e-38 Score=301.82 Aligned_cols=290 Identities=16% Similarity=0.150 Sum_probs=219.3
Q ss_pred CeEEEEeccCCCCCceEEEEeHHHHHHHHHHHHHHhcCCCCCceEEecCCcCChhhhHHHHhhhhcCceeeeeCCccccc
Q psy14342 1 MLAYLDFSVSTTGMLAGIKMSHAAVTSLCRSMKLACELYPSRHIALCLDPYCGLGFALWVLSSVYSGHHSILIPPSEVEV 80 (316)
Q Consensus 1 ~~a~i~~TSGTTG~PK~V~~t~~~l~~~~~~~~~~~~~~~~d~~l~~~p~~h~~g~~~~~~~~l~~G~~~v~~~~~~~~~ 80 (316)
++++|+|||||||.||+|.++|++++.++......+++.++|+++.++|++|.+|+...++.++..|+++++.++.
T Consensus 191 ~~a~i~~TSGtTG~PK~v~~s~~~l~~~~~~~~~~~~~~~~d~~l~~~p~~~~~g~~~~~~~~l~~G~~i~~~~~~---- 266 (546)
T PRK08314 191 DLAVLPYTSGTTGVPKGCMHTHRTVMANAVGSVLWSNSTPESVVLAVLPLFHVTGMVHSMNAPIYAGATVVLMPRW---- 266 (546)
T ss_pred CeEEEEeCCCCCCCCcEEEEecHHHHHHHHHHHHhhCCCCCceEEEEcCchHHHHHHHHHHHHHHcCCeEEecCCC----
Confidence 5799999999999999999999999998888888888999999999999999999988889999999999998643
Q ss_pred ChHHHHHHHhccceeeEEecccchhhHHhhHHhhh---hhcccccccc-----------------cccccccchhccCCC
Q psy14342 81 NPALWLSAVSQYRVRDTFCSYGMLAGIKMSHAAVT---SLCRSMKLAC-----------------ELYPSRHIALCLDPY 140 (316)
Q Consensus 81 ~~~~~~~~~~~~~~t~~~~~~~~~~~l~~~~~~~~---~~~~~~~ls~-----------------e~~~~yG~te~~~~~ 140 (316)
++..+++.++++++|+++.+|+++..+........ ...+.+-..+ .+++.||+||++...
T Consensus 267 ~~~~~~~~i~~~~~t~~~~~p~~~~~ll~~~~~~~~~~~~l~~~~~gG~~~~~~~~~~~~~~~~~~~~~~YG~tE~~~~~ 346 (546)
T PRK08314 267 DREAAARLIERYRVTHWTNIPTMVVDFLASPGLAERDLSSLRYIGGGGAAMPEAVAERLKELTGLDYVEGYGLTETMAQT 346 (546)
T ss_pred CHHHHHHHHHHhcCceecccHHHHHHHHhCCCccccCchhhheeeeccccCCHHHHHHHHHHcCCcEEecccccccccce
Confidence 57889999999999999999988765543211000 0001111111 388899999987543
Q ss_pred CCCCceEEEEeeeccCcccccCCCce-EEecCc------------eEEecC---CCcccCCCcC--------------CC
Q psy14342 141 CGLGFALWVLSSVYSGHHSILIPPSE-VEVNPA------------LWLSAV---SQYRVRDTFC--------------SC 190 (316)
Q Consensus 141 ~~~~~~~~~~~~~~~g~~~~~~~g~~-~i~d~~------------l~v~~~---~gY~~~~~~~--------------~~ 190 (316)
....+. ....+..|.+++|.+ +++|++ |+++|+ .||++++..+ ++
T Consensus 347 ~~~~~~-----~~~~~~~G~~~~g~~~~i~d~~~~~~~~~g~~Gel~v~g~~~~~gY~~~~~~t~~~f~~~~~~~~~~TG 421 (546)
T PRK08314 347 HSNPPD-----RPKLQCLGIPTFGVDARVIDPETLEELPPGEVGEIVVHGPQVFKGYWNRPEATAEAFIEIDGKRFFRTG 421 (546)
T ss_pred ecCCCc-----CCCCCccCcccCCeEEEEEeCCCCcCCCCCCceEEEEECCchhccccCChhHhhhhhhhcCCCceEecC
Confidence 322211 111234455789999 888742 999999 8999986543 22
Q ss_pred Cceeeec-Cc---CCcccceeEECCcccChHhHHHHHHHhccccceeEEEeeC-----CcEEEEEEecCCch---hhcch
Q psy14342 191 NGALYQG-AE---RLALDETIMLRGMRYHPIDIENSVMRAHKKIAECAVFTWT-----NLLVVVVELDGNES---EALDL 258 (316)
Q Consensus 191 d~g~~~~-g~---~GR~dd~i~~~G~~v~p~eIE~~l~~~~p~v~~~~v~~~~-----~~~~~~v~~~~~~~---~~~~l 258 (316)
|.|++++ |. .||.||+|+++|++|+|.|||++|.+ ||.|.+++|++.. +.++++++..+... +.+++
T Consensus 422 Dl~~~~~~g~l~~~GR~~d~i~~~G~~v~~~eIE~~i~~-~~~v~~~~v~~~~~~~~~~~~~a~v~~~~~~~~~~~~~~l 500 (546)
T PRK08314 422 DLGRMDEEGYFFITDRLKRMINASGFKVWPAEVENLLYK-HPAIQEACVIATPDPRRGETVKAVVVLRPEARGKTTEEEI 500 (546)
T ss_pred CEEEEcCCCcEEEEecchhhEEeCCEEECHHHHHHHHHh-CcchheEEEEeCCCcccCceeEEEEEECCCCCCCCCHHHH
Confidence 5555544 32 89999999999999999999999999 9999999999873 46777777665432 22567
Q ss_pred HHHHHHHHHHhcCeeecEEEEEcCCCcccCCCchhhHHHHHHHHHc
Q psy14342 259 VPLVTNAVLEEHHLIVGVAVVVDPGVVPINSRGEKQRMHLRDGFLA 304 (316)
Q Consensus 259 ~~~~~~~l~~~~~~~~~~~~~~~~~~lP~t~~gKi~r~~l~~~~~~ 304 (316)
.+++++.+. .+..| ..+.+++ ++|+|++||++|++|++...+
T Consensus 501 ~~~~~~~l~-~~~~P-~~~~~v~--~iP~t~~GKv~r~~L~~~~~~ 542 (546)
T PRK08314 501 IAWAREHMA-AYKYP-RIVEFVD--SLPKSGSGKILWRQLQEQEKA 542 (546)
T ss_pred HHHHHHhcc-cCCCC-cEEEEec--CCCCCCccceeHHHHHHHHhh
Confidence 777777666 44443 4556655 899999999999999887654
|
|
| >PRK08043 bifunctional acyl-[acyl carrier protein] synthetase/2-acylglycerophosphoethanolamine acyltransferase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.9e-38 Score=309.54 Aligned_cols=291 Identities=12% Similarity=0.093 Sum_probs=211.4
Q ss_pred CeEEEEeccCCCCCceEEEEeHHHHHHHHHHHHHHhcCCCCCceEEecCCcCChhhhHHHHhhhhcCceeeeeCCccccc
Q psy14342 1 MLAYLDFSVSTTGMLAGIKMSHAAVTSLCRSMKLACELYPSRHIALCLDPYCGLGFALWVLSSVYSGHHSILIPPSEVEV 80 (316)
Q Consensus 1 ~~a~i~~TSGTTG~PK~V~~t~~~l~~~~~~~~~~~~~~~~d~~l~~~p~~h~~g~~~~~~~~l~~G~~~v~~~~~~~~~ 80 (316)
|+++|+|||||||.||||++||+++...+......++++++|+++.++|++|.+|+...++.++..|+++++.+.. .
T Consensus 366 d~a~i~~TSGTTG~PKgv~~sh~~l~~~~~~~~~~~~~~~~d~~l~~~Pl~h~~g~~~~~~~~l~~G~~vv~~~~~---~ 442 (718)
T PRK08043 366 DAALILFTSGSEGHPKGVVHSHKSLLANVEQIKTIADFTPNDRFMSALPLFHSFGLTVGLFTPLLTGAEVFLYPSP---L 442 (718)
T ss_pred CeEEEEECCCCCCCCCEEEEcHHHHHHHHHHHHHhhCCCccCeEEEcCcchhhhhhHHHHHHHHHcCCEEEEeCCc---c
Confidence 6899999999999999999999999988888888889999999999999999999987788999999999987532 1
Q ss_pred ChHHHHHHHhccceeeEEecccchhhHHhhHHhhh-hhcccccccc-----------------cccccccchhccCCCCC
Q psy14342 81 NPALWLSAVSQYRVRDTFCSYGMLAGIKMSHAAVT-SLCRSMKLAC-----------------ELYPSRHIALCLDPYCG 142 (316)
Q Consensus 81 ~~~~~~~~~~~~~~t~~~~~~~~~~~l~~~~~~~~-~~~~~~~ls~-----------------e~~~~yG~te~~~~~~~ 142 (316)
++..+++.++++++|+++.+|+++..+........ ...+.+-.++ .+++.||+||++.....
T Consensus 443 ~~~~~~~~i~~~~vt~~~~~p~~~~~l~~~~~~~~~~~lr~i~~gg~~l~~~~~~~~~~~~g~~l~~~YG~TE~~~~~~~ 522 (718)
T PRK08043 443 HYRIVPELVYDRNCTVLFGTSTFLGNYARFANPYDFARLRYVVAGAEKLQESTKQLWQDKFGLRILEGYGVTECAPVVSI 522 (718)
T ss_pred cHHHHHHHHHhcCCeEEEchHHHHHHhhhhcCcccccceEEEEEeCccCCHHHHHHHHHHcCCCeecccCcccccceEEe
Confidence 45677899999999999888887654433211100 0011111111 27889999998643322
Q ss_pred CCceEEEEeeeccCcccccCCCce-EEecCc-------eEEecC---CCcccC--CCc-------C-----------CCC
Q psy14342 143 LGFALWVLSSVYSGHHSILIPPSE-VEVNPA-------LWLSAV---SQYRVR--DTF-------C-----------SCN 191 (316)
Q Consensus 143 ~~~~~~~~~~~~~g~~~~~~~g~~-~i~d~~-------l~v~~~---~gY~~~--~~~-------~-----------~~d 191 (316)
..+. ....++.|.++||++ +++|++ |+++|+ .|||++ ++. + ++|
T Consensus 523 ~~~~-----~~~~~svG~p~pg~~~~i~d~~~~~~~Gel~v~g~~v~~GY~~~e~~~~~~~~~~~~~~~~~~~gw~~TGD 597 (718)
T PRK08043 523 NVPM-----AAKPGTVGRILPGMDARLLSVPGIEQGGRLQLKGPNIMNGYLRVEKPGVLEVPTAENARGEMERGWYDTGD 597 (718)
T ss_pred cCCc-----ccCCCCCCCcCCCCeeEEecCCCCCCceEEEEecCCccccccCCCCcccccccccccccccccCCeEecCC
Confidence 2110 112345566899999 887643 999999 899983 321 1 114
Q ss_pred ceeeec-Cc---CCcccceeEECCcccChHhHHHHHHHhccccceeEEEeeC-----CcEEEEEEecCCchhhcchHHHH
Q psy14342 192 GALYQG-AE---RLALDETIMLRGMRYHPIDIENSVMRAHKKIAECAVFTWT-----NLLVVVVELDGNESEALDLVPLV 262 (316)
Q Consensus 192 ~g~~~~-g~---~GR~dd~i~~~G~~v~p~eIE~~l~~~~p~v~~~~v~~~~-----~~~~~~v~~~~~~~~~~~l~~~~ 262 (316)
.|++++ |. +||.||+||++|++|+|.|||++|.+ |+.+.+++|++.. +.+++++. ....+.+++.+++
T Consensus 598 lg~~d~dG~l~i~GR~~d~I~~~G~~V~p~eIE~~l~~-~~~~~~~avv~~~~~~~ge~~v~~~~--~~~~~~~~l~~~~ 674 (718)
T PRK08043 598 IVRFDEQGFVQIQGRAKRFAKIAGEMVSLEMVEQLALG-VSPDKQHATAIKSDASKGEALVLFTT--DSELTREKLQQYA 674 (718)
T ss_pred EEEEcCCCcEEEEecCCCeeEeCcEEcCHHHHHHHHHh-CCccceEEEEEccCCCCCceEEEEEc--CcccCHHHHHHHH
Confidence 555543 33 99999999999999999999999999 9888888888763 34444432 2223345667777
Q ss_pred HHHHHHhcCeeecEEEEEcCCCcccCCCchhhHHHHHHHHHcC
Q psy14342 263 TNAVLEEHHLIVGVAVVVDPGVVPINSRGEKQRMHLRDGFLAD 305 (316)
Q Consensus 263 ~~~l~~~~~~~~~~~~~~~~~~lP~t~~gKi~r~~l~~~~~~~ 305 (316)
++.....+..| ..+.+++ ++|+|++||++|++|++.+.+.
T Consensus 675 ~~~~l~~~~vP-~~i~~v~--~lP~t~~GKi~r~~L~~~~~~~ 714 (718)
T PRK08043 675 REHGVPELAVP-RDIRYLK--QLPLLGSGKPDFVTLKSMVDEP 714 (718)
T ss_pred HhcCCCcccCC-ceEEEec--ccCcCCCCCcCHHHHHHHHhcc
Confidence 66522255555 4666666 8999999999999999988763
|
|
| >PRK07638 acyl-CoA synthetase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.1e-38 Score=293.80 Aligned_cols=287 Identities=12% Similarity=0.093 Sum_probs=217.7
Q ss_pred CeEEEEeccCCCCCceEEEEeHHHHHHHHHHHHHHhcCCCCCceEEecCCcCChhhhHHHHhhhhcCceeeeeCCccccc
Q psy14342 1 MLAYLDFSVSTTGMLAGIKMSHAAVTSLCRSMKLACELYPSRHIALCLDPYCGLGFALWVLSSVYSGHHSILIPPSEVEV 80 (316)
Q Consensus 1 ~~a~i~~TSGTTG~PK~V~~t~~~l~~~~~~~~~~~~~~~~d~~l~~~p~~h~~g~~~~~~~~l~~G~~~v~~~~~~~~~ 80 (316)
|+++|+|||||||.||+|+++|+++..++......+++.++|+++...|++|..++.. ++.++..|+++++.+..
T Consensus 144 ~~a~i~~TSGtTG~PKgv~~s~~~~~~~~~~~~~~~~~~~~d~~~~~~~l~~~~~l~~-~~~~l~~g~~~~~~~~~---- 218 (487)
T PRK07638 144 APFYMGFTSGSTGKPKAFLRAQQSWLHSFDCNVHDFHMKREDSVLIAGTLVHSLFLYG-AISTLYVGQTVHLMRKF---- 218 (487)
T ss_pred CcEEEEeCCCCCCCCcEEEEecHHHHHHHHHHHHhcCcCCCCEEEEeecchHHHHHHH-HHHHHccCcEEEEcCCC----
Confidence 4799999999999999999999999988888888889999999999999999887765 88999999999987542
Q ss_pred ChHHHHHHHhccceeeEEecccchhhHHhhHHhhhhhcccccccc------------------cccccccchhccCCCCC
Q psy14342 81 NPALWLSAVSQYRVRDTFCSYGMLAGIKMSHAAVTSLCRSMKLAC------------------ELYPSRHIALCLDPYCG 142 (316)
Q Consensus 81 ~~~~~~~~~~~~~~t~~~~~~~~~~~l~~~~~~~~~~~~~~~ls~------------------e~~~~yG~te~~~~~~~ 142 (316)
+|..+++.++++++|+++.+|+++..+.......... ..+-.++ ++++.||+||++.....
T Consensus 219 ~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~-~~~~~~G~~l~~~~~~~~~~~~~~~~~~~~YG~tE~~~~~~~ 297 (487)
T PRK07638 219 IPNQVLDKLETENISVMYTVPTMLESLYKENRVIENK-MKIISSGAKWEAEAKEKIKNIFPYAKLYEFYGASELSFVTAL 297 (487)
T ss_pred CHHHHHHHHHHcCCeEEEeCcHHHHHHHhCcCcCCce-eEEEEcCCCCCHHHHHHHHHHcCCCeEEEEecCCccCceEEe
Confidence 6889999999999999999999887665432211100 0111111 38889999998743221
Q ss_pred CCceEEEEeeeccCcccccCCCce-EEecCc-----------eEEecC---CCcccCCCcC----------CCCceeeec
Q psy14342 143 LGFALWVLSSVYSGHHSILIPPSE-VEVNPA-----------LWLSAV---SQYRVRDTFC----------SCNGALYQG 197 (316)
Q Consensus 143 ~~~~~~~~~~~~~g~~~~~~~g~~-~i~d~~-----------l~v~~~---~gY~~~~~~~----------~~d~g~~~~ 197 (316)
.... .....++.|.+++|.. +++|++ |+++|+ .|||+++..+ ++|.|++++
T Consensus 298 ~~~~----~~~~~~~~G~~~~~~~~~i~d~~g~~~~~g~~Gel~v~~~~~~~gy~~~~~~~~~~~~~g~~~TGDl~~~d~ 373 (487)
T PRK07638 298 VDEE----SERRPNSVGRPFHNVQVRICNEAGEEVQKGEIGTVYVKSPQFFMGYIIGGVLARELNADGWMTVRDVGYEDE 373 (487)
T ss_pred cccc----cCCCCCCCCcccCCcEEEEECCCCCCCCCCCCeEEEEecccceeeecCCHHHHhhhccCCcEecCccEeEcC
Confidence 1100 0111234556899999 888754 999999 8999986432 346666654
Q ss_pred Cc----CCcccceeEECCcccChHhHHHHHHHhccccceeEEEeeC-----CcEEEEEEecCCchhhcchHHHHHHHHHH
Q psy14342 198 AE----RLALDETIMLRGMRYHPIDIENSVMRAHKKIAECAVFTWT-----NLLVVVVELDGNESEALDLVPLVTNAVLE 268 (316)
Q Consensus 198 g~----~GR~dd~i~~~G~~v~p~eIE~~l~~~~p~v~~~~v~~~~-----~~~~~~v~~~~~~~~~~~l~~~~~~~l~~ 268 (316)
++ .||.||+||++|++|+|.|||++|.+ ||.|.+|+|++.. +.+++++.. ....+++.+++++.+.
T Consensus 374 ~g~l~i~GR~~d~i~~~G~~v~~~eiE~~l~~-~~~v~~~~v~~~~~~~~g~~~~~~v~~---~~~~~~l~~~~~~~l~- 448 (487)
T PRK07638 374 EGFIYIVGREKNMILFGGINIFPEEIESVLHE-HPAVDEIVVIGVPDSYWGEKPVAIIKG---SATKQQLKSFCLQRLS- 448 (487)
T ss_pred CCeEEEEecCCCeEEeCCEEECHHHHHHHHHh-CCCeeeEEEEecCchhcCCeeEEEEEC---CCCHHHHHHHHHHHhh-
Confidence 33 99999999999999999999999999 9999999999884 345555543 2344678888888887
Q ss_pred hcCeeecEEEEEcCCCcccCCCchhhHHHHHHHHHcC
Q psy14342 269 EHHLIVGVAVVVDPGVVPINSRGEKQRMHLRDGFLAD 305 (316)
Q Consensus 269 ~~~~~~~~~~~~~~~~lP~t~~gKi~r~~l~~~~~~~ 305 (316)
.+..| ..+.+++ ++|+|++||++|++|++.+...
T Consensus 449 ~~~~p-~~i~~v~--~iP~t~~GKv~r~~L~~~~~~~ 482 (487)
T PRK07638 449 SFKIP-KEWHFVD--EIPYTNSGKIARMEAKSWIENQ 482 (487)
T ss_pred cccCC-cEEEEec--ccCCCCcccccHHHHHHHHhcc
Confidence 45555 4566665 8999999999999999887763
|
|
| >PRK05857 acyl-CoA synthetase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.3e-38 Score=298.61 Aligned_cols=297 Identities=13% Similarity=0.072 Sum_probs=207.3
Q ss_pred CeEEEEeccCCCCCceEEEEeHHHHHHHHHHHH----HHhcCCCCCceEEecCCcCChhhhHHHHhhhhcCceeeeeCCc
Q psy14342 1 MLAYLDFSVSTTGMLAGIKMSHAAVTSLCRSMK----LACELYPSRHIALCLDPYCGLGFALWVLSSVYSGHHSILIPPS 76 (316)
Q Consensus 1 ~~a~i~~TSGTTG~PK~V~~t~~~l~~~~~~~~----~~~~~~~~d~~l~~~p~~h~~g~~~~~~~~l~~G~~~v~~~~~ 76 (316)
++++++|||||||.||||.++|+++..+..... ..++...+++.+.++|++|.++++. .+.+++.|+++++.+
T Consensus 170 ~~a~i~~TSGTTG~PKgV~~sh~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~h~~~l~~-~~~~l~~G~~~v~~~-- 246 (540)
T PRK05857 170 DPLAMIFTSGTTGEPKAVLLANRTFFAVPDILQKEGLNWVTWVVGETTYSPLPATHIGGLWW-ILTCLMHGGLCVTGG-- 246 (540)
T ss_pred CeEEEEeCCCCCCCCCeEEEechhhhhhhHHhhhccccccccccCceeeecCCccccchHHH-HHHHhhcceeEEecC--
Confidence 589999999999999999999999877654332 2345567789999999999999986 788999999887632
Q ss_pred ccccChHHHHHHHhccceeeEEecccchhhHHhhHHhhhhhccccc---ccc----------------cccccccchhcc
Q psy14342 77 EVEVNPALWLSAVSQYRVRDTFCSYGMLAGIKMSHAAVTSLCRSMK---LAC----------------ELYPSRHIALCL 137 (316)
Q Consensus 77 ~~~~~~~~~~~~~~~~~~t~~~~~~~~~~~l~~~~~~~~~~~~~~~---ls~----------------e~~~~yG~te~~ 137 (316)
.++..+++.++++++++++.+|+++..+............++. .++ .+.+.||+||++
T Consensus 247 ---~~~~~~~~~i~~~~it~~~~~P~~~~~l~~~~~~~~~~~~~lr~~~~gG~~~~~~~~~~~~~~g~~i~~~YG~TE~~ 323 (540)
T PRK05857 247 ---ENTTSLLEILTTNAVATTCLVPTLLSKLVSELKSANATVPSLRLVGYGGSRAIAADVRFIEATGVRTAQVYGLSETG 323 (540)
T ss_pred ---CChhHHHHHHHhcCcceEEeChHHHHHHHhccccCCCcCccceEEEEcCccCCchhHHHHHHhCCeeecccCCCcCC
Confidence 2577899999999999999999988765443221000001111 111 278899999986
Q ss_pred CCCCCCCceEEEEeeeccCcccccCCCce-EEecC-----------------ceEEecC---CCcccCCCcCCC------
Q psy14342 138 DPYCGLGFALWVLSSVYSGHHSILIPPSE-VEVNP-----------------ALWLSAV---SQYRVRDTFCSC------ 190 (316)
Q Consensus 138 ~~~~~~~~~~~~~~~~~~g~~~~~~~g~~-~i~d~-----------------~l~v~~~---~gY~~~~~~~~~------ 190 (316)
..................++.|.+++|++ +++|+ +|+++|+ .|||++++.+..
T Consensus 324 ~~~~~~~~~~~~~~~~~~~~~G~~~~g~~v~i~d~~~~~~~~~~~~~~~~~Gel~v~g~~~~~GY~~~~~~t~~~~~~g~ 403 (540)
T PRK05857 324 CTALCLPTDDGSIVKIEAGAVGRPYPGVDVYLAATDGIGPTAPGAGPSASFGTLWIKSPANMLGYWNNPERTAEVLIDGW 403 (540)
T ss_pred ceeeecccccccccccccCCcCcccCCcEEEEECccccCccccccCCCCCcceEEEeCcchhhhhhCCccchhhhcCCCc
Confidence 42211110000000112344556899999 77762 2899999 899998776532
Q ss_pred ----CceeeecCc----CCcccceeEECCcccChHhHHHHHHHhccccceeEEEeeCC-----cEEEEEEecCCc--hhh
Q psy14342 191 ----NGALYQGAE----RLALDETIMLRGMRYHPIDIENSVMRAHKKIAECAVFTWTN-----LLVVVVELDGNE--SEA 255 (316)
Q Consensus 191 ----d~g~~~~g~----~GR~dd~i~~~G~~v~p~eIE~~l~~~~p~v~~~~v~~~~~-----~~~~~v~~~~~~--~~~ 255 (316)
|.|++++++ .||.||+||++|++|+|.|||++|.. ||.|.+|+|++..+ .+++++...+.. ...
T Consensus 404 ~~TGDlg~~d~~g~l~~~GR~~~~ik~~G~~v~p~eIE~~l~~-~~~V~~~~v~~~~~~~~~~~~~~~vv~~~~~~~~~~ 482 (540)
T PRK05857 404 VNTGDLLERREDGFFYIKGRSSEMIICGGVNIAPDEVDRIAEG-VSGVREAACYEIPDEEFGALVGLAVVASAELDESAA 482 (540)
T ss_pred eeccceEEEcCCceEEEeccccccEecCCEEECHHHHHHHHHh-CCCeeEEEEEecCccccccceEEEEEeCCCCChhhH
Confidence 666665443 99999999999999999999999999 99999999998842 444444443321 112
Q ss_pred cchHHHHHHHHHHhcCe--eecEEEEEcCCCcccCCCchhhHHHHHHHHHcCC
Q psy14342 256 LDLVPLVTNAVLEEHHL--IVGVAVVVDPGVVPINSRGEKQRMHLRDGFLADQ 306 (316)
Q Consensus 256 ~~l~~~~~~~l~~~~~~--~~~~~~~~~~~~lP~t~~gKi~r~~l~~~~~~~~ 306 (316)
+++.+.+++.+.+.... .+..+.++ +++|+|++||++|++|++.+....
T Consensus 483 ~~l~~~~~~~~~~~l~~~~~P~~v~~~--~~iP~t~~GKi~r~~l~~~~~~~~ 533 (540)
T PRK05857 483 RALKHTIAARFRRESEPMARPSTIVIV--TDIPRTQSGKVMRASLAAAATADK 533 (540)
T ss_pred HHHHHHHHHHHHhhhccccCCeEEEEh--hcCCCCCCcceeHHHHHHhhhhcc
Confidence 34556665555433322 22344444 489999999999999999888644
|
|
| >PLN02861 long-chain-fatty-acid-CoA ligase | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-38 Score=308.08 Aligned_cols=301 Identities=13% Similarity=0.040 Sum_probs=211.5
Q ss_pred CeEEEEeccCCCCCceEEEEeHHHHHHHHHHHHHHhc-----CCCCCceEEecCCcCChhhhHHHHhhhhcCceeeeeCC
Q psy14342 1 MLAYLDFSVSTTGMLAGIKMSHAAVTSLCRSMKLACE-----LYPSRHIALCLDPYCGLGFALWVLSSVYSGHHSILIPP 75 (316)
Q Consensus 1 ~~a~i~~TSGTTG~PK~V~~t~~~l~~~~~~~~~~~~-----~~~~d~~l~~~p~~h~~g~~~~~~~~l~~G~~~v~~~~ 75 (316)
|+++|+|||||||.||||++||+++...+......++ +.++|++++++|++|+++++. .+.+++.|+++++..
T Consensus 221 d~a~i~yTSGTTG~PKGV~lth~~l~~~~~~~~~~~~~~~~~~~~~d~~l~~lPl~H~~~~~~-~~~~l~~G~~v~~~~- 298 (660)
T PLN02861 221 DICTIMYTSGTTGEPKGVILTNRAIIAEVLSTDHLLKVTDRVATEEDSYFSYLPLAHVYDQVI-ETYCISKGASIGFWQ- 298 (660)
T ss_pred ceEEEEecCCCCCCCCEEEEecHHHHHHHHHHHhccccccccCCCCCEEEEECcHHHHHHHHH-HHHHHHhCCEEEEeC-
Confidence 6899999999999999999999999988776665554 467899999999999999876 556899999998863
Q ss_pred cccccChHHHHHHHhccceeeEEecccchhhHHhhH------------------------------------Hhhhh---
Q psy14342 76 SEVEVNPALWLSAVSQYRVRDTFCSYGMLAGIKMSH------------------------------------AAVTS--- 116 (316)
Q Consensus 76 ~~~~~~~~~~~~~~~~~~~t~~~~~~~~~~~l~~~~------------------------------------~~~~~--- 116 (316)
.++..+++.++++++|+++.+|.++..+.... .....
T Consensus 299 ----~~~~~~~~~i~~~~~T~~~~vP~~~~~l~~~~~~~~~~~~~~~~~l~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~ 374 (660)
T PLN02861 299 ----GDIRYLMEDVQALKPTIFCGVPRVYDRIYTGIMQKISSGGMLRKKLFDFAYNYKLGNLRKGLKQEEASPRLDRLVF 374 (660)
T ss_pred ----CCHHHHHHHHHHhCCcEEeechHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHHhcCCCCcCccHhHHHHHH
Confidence 25788999999999999999999887553210 00000
Q ss_pred -----hc-cccc--ccc------------------cccccccchhccCCCCCCCceEEEEeeeccCcccccCCCce-EEe
Q psy14342 117 -----LC-RSMK--LAC------------------ELYPSRHIALCLDPYCGLGFALWVLSSVYSGHHSILIPPSE-VEV 169 (316)
Q Consensus 117 -----~~-~~~~--ls~------------------e~~~~yG~te~~~~~~~~~~~~~~~~~~~~g~~~~~~~g~~-~i~ 169 (316)
.. ..++ +++ .+.+.||+||++.......+. .....|+.|.|+||++ +++
T Consensus 375 ~~~r~~lg~~lr~~~~Ggapl~~~~~~~~~~~~~~~l~~~YG~TE~~~~~~~~~~~----~~~~~gsvG~p~p~~ev~i~ 450 (660)
T PLN02861 375 DKIKEGLGGRVRLLLSGAAPLPRHVEEFLRVTSCSVLSQGYGLTESCGGCFTSIAN----VFSMVGTVGVPMTTIEARLE 450 (660)
T ss_pred HHHHHHhCCcEEEEEECCCCCCHHHHHHHHHHcCCCeeEecchhhhhhceeecccc----cCCCCCCccCccCceEEEEE
Confidence 00 0111 111 267899999986433222110 0112345566899999 887
Q ss_pred c--------------CceEEecC---CCcccCCCcCCC----------Cceeeec-Cc---CCcccceeEE-CCcccChH
Q psy14342 170 N--------------PALWLSAV---SQYRVRDTFCSC----------NGALYQG-AE---RLALDETIML-RGMRYHPI 217 (316)
Q Consensus 170 d--------------~~l~v~~~---~gY~~~~~~~~~----------d~g~~~~-g~---~GR~dd~i~~-~G~~v~p~ 217 (316)
| ++|+++|| .|||++++.+.. |.|++++ |. +||.||+||+ +|++|+|.
T Consensus 451 d~~~~g~~~~~~~~~GEi~vrGp~v~~GY~~~pe~T~~~f~dGw~~TGDlg~~d~dG~l~i~GR~kd~Ik~~~G~~I~p~ 530 (660)
T PLN02861 451 SVPEMGYDALSDVPRGEICLRGNTLFSGYHKRQDLTEEVLIDGWFHTGDIGEWQPNGAMKIIDRKKNIFKLSQGEYVAVE 530 (660)
T ss_pred EccccCcccCCCCCceeEEEcCCcccccccCCHHHHHhhhhccCcccCceEEECCCCcEEEEeccccceEcCCCeEEcHH
Confidence 5 23999999 899999887643 5666654 33 9999999996 79999999
Q ss_pred hHHHHHHHhccccceeEEEeeC--CcEEEEEEecCCch-----------hhc------chHHHHHHHHHH---hcCe---
Q psy14342 218 DIENSVMRAHKKIAECAVFTWT--NLLVVVVELDGNES-----------EAL------DLVPLVTNAVLE---EHHL--- 272 (316)
Q Consensus 218 eIE~~l~~~~p~v~~~~v~~~~--~~~~~~v~~~~~~~-----------~~~------~l~~~~~~~l~~---~~~~--- 272 (316)
|||++|.+ ||.|.+|+|+|.+ +.+++++++..... +.. +....+.+.+.+ ..++
T Consensus 531 eIE~~l~~-~p~V~~a~V~G~~~~~~~~A~vv~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 609 (660)
T PLN02861 531 NLENTYSR-CPLIASIWVYGNSFESFLVAVVVPDRQALEDWAANNNKTGDFKSLCKNLKARKYILDELNSTGKKLQLRGF 609 (660)
T ss_pred HHHHHHhc-CCCeeEEEEEecCCcceeEEEEEcCHHHHHHHHHHcCCCCCHHHHhcCHHHHHHHHHHHHHHHHHcCCCCc
Confidence 99999999 9999999999997 45677766543210 001 122222222221 1111
Q ss_pred -eecEEEEEcCCCc-----ccCCCchhhHHHHHHHHHcCCCCcchhhc
Q psy14342 273 -IVGVAVVVDPGVV-----PINSRGEKQRMHLRDGFLADQLDPIYVAY 314 (316)
Q Consensus 273 -~~~~~~~~~~~~l-----P~t~~gKi~r~~l~~~~~~~~~~~~~~~~ 314 (316)
....+.+.. +.+ .+|+++|++|+.+.+.|++ .++.+|...
T Consensus 610 e~i~~~~l~~-~~ft~~ng~lT~t~K~~R~~i~~~y~~-~I~~lY~~~ 655 (660)
T PLN02861 610 EMLKAIHLEP-NPFDIERDLITPTFKLKRPQLLKYYKD-CIDQLYSEA 655 (660)
T ss_pred ceeeEEEEeC-CCCCcccCcCCHHHhhhHHHHHHHHHH-HHHHHHHhh
Confidence 112333322 244 7999999999999999998 899898653
|
|
| >PLN02246 4-coumarate--CoA ligase | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-37 Score=296.37 Aligned_cols=296 Identities=17% Similarity=0.143 Sum_probs=213.2
Q ss_pred CeEEEEeccCCCCCceEEEEeHHHHHHHHHHHHH----HhcCCCCCceEEecCCcCChhhhHHHHhhhhcCceeeeeCCc
Q psy14342 1 MLAYLDFSVSTTGMLAGIKMSHAAVTSLCRSMKL----ACELYPSRHIALCLDPYCGLGFALWVLSSVYSGHHSILIPPS 76 (316)
Q Consensus 1 ~~a~i~~TSGTTG~PK~V~~t~~~l~~~~~~~~~----~~~~~~~d~~l~~~p~~h~~g~~~~~~~~l~~G~~~v~~~~~ 76 (316)
++++++|||||||.||+|+++|+++......... .+++.++|+++.++|++|.+++...++.++..|+++++.++.
T Consensus 180 ~~~~i~~TSGtTG~PKgv~~s~~~l~~~~~~~~~~~~~~~~~~~~d~~l~~~pl~~~~~~~~~~~~~l~~G~~~~~~~~~ 259 (537)
T PLN02246 180 DVVALPYSSGTTGLPKGVMLTHKGLVTSVAQQVDGENPNLYFHSDDVILCVLPMFHIYSLNSVLLCGLRVGAAILIMPKF 259 (537)
T ss_pred CEEEEEeCCCCCCCCceEEEeHHHHHHHHHHHhhccccccCCCCCcEEEEeechHHHHHHHHHHHHHHhcCCEEEEeCCC
Confidence 4789999999999999999999999877654433 467889999999999999999877788999999999998643
Q ss_pred ccccChHHHHHHHhccceeeEEecccchhhHHhhHHhhhh---hcccccccc------------------cccccccchh
Q psy14342 77 EVEVNPALWLSAVSQYRVRDTFCSYGMLAGIKMSHAAVTS---LCRSMKLAC------------------ELYPSRHIAL 135 (316)
Q Consensus 77 ~~~~~~~~~~~~~~~~~~t~~~~~~~~~~~l~~~~~~~~~---~~~~~~ls~------------------e~~~~yG~te 135 (316)
++..+++.+++++++++..+|+++..+......... ..+.+-.++ .+.+.||+||
T Consensus 260 ----~~~~~~~~i~~~~~t~~~~~p~~~~~l~~~~~~~~~~~~~lr~~~~gg~~l~~~~~~~~~~~~~~~~~~~~YG~tE 335 (537)
T PLN02246 260 ----EIGALLELIQRHKVTIAPFVPPIVLAIAKSPVVEKYDLSSIRMVLSGAAPLGKELEDAFRAKLPNAVLGQGYGMTE 335 (537)
T ss_pred ----CHHHHHHHHHHhCceEEEcchHHHHHHhcCccccccCccceeEEEEecCcCCHHHHHHHHHHcCCCeEeccccccc
Confidence 578899999999999999999987766443221100 011111111 1667899999
Q ss_pred ccCCCCCCCceEEEEeeeccCcccccCCCce-EEecCc------------eEEecC---CCcccCCCcCCC---------
Q psy14342 136 CLDPYCGLGFALWVLSSVYSGHHSILIPPSE-VEVNPA------------LWLSAV---SQYRVRDTFCSC--------- 190 (316)
Q Consensus 136 ~~~~~~~~~~~~~~~~~~~~g~~~~~~~g~~-~i~d~~------------l~v~~~---~gY~~~~~~~~~--------- 190 (316)
++..................+..|.+++|.+ +++|++ |+++|+ .|||++++.+..
T Consensus 336 ~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~i~d~~~~~~~~~g~~Gel~v~g~~~~~GY~~~~~~~~~~~~~~~~~~ 415 (537)
T PLN02246 336 AGPVLAMCLAFAKEPFPVKSGSCGTVVRNAELKIVDPETGASLPRNQPGEICIRGPQIMKGYLNDPEATANTIDKDGWLH 415 (537)
T ss_pred cCcccccccccCCCCccccCCccccccCCcEEEEecCCCCCcCCCCCceEEEEECCchhccccCCchhhhhcccCCCCee
Confidence 8643221110000000011233455789999 887742 999999 899998766532
Q ss_pred --CceeeecCc----CCcccceeEECCcccChHhHHHHHHHhccccceeEEEeeC-----CcEEEEEEecCCc-hhhcch
Q psy14342 191 --NGALYQGAE----RLALDETIMLRGMRYHPIDIENSVMRAHKKIAECAVFTWT-----NLLVVVVELDGNE-SEALDL 258 (316)
Q Consensus 191 --d~g~~~~g~----~GR~dd~i~~~G~~v~p~eIE~~l~~~~p~v~~~~v~~~~-----~~~~~~v~~~~~~-~~~~~l 258 (316)
|.|++++++ .||.||+||.+|++|+|.|||++|.+ ||+|.+++|++.. +.+++++...+.. .+.+++
T Consensus 416 TGD~~~~~~~g~l~~~GR~dd~i~~~G~~i~~~eIE~~l~~-~~~v~~~~v~~~~~~~~~~~~~~~v~~~~~~~~~~~~l 494 (537)
T PLN02246 416 TGDIGYIDDDDELFIVDRLKELIKYKGFQVAPAELEALLIS-HPSIADAAVVPMKDEVAGEVPVAFVVRSNGSEITEDEI 494 (537)
T ss_pred ecceEEEeCCCeEEEEecccceEEECCEEECcHHHHHHHHh-CCCeeEEEEEcccCccCCceeEEEEEeCCCCCCCHHHH
Confidence 555555432 99999999999999999999999999 9999999999873 3566666555432 223456
Q ss_pred HHHHHHHHHHhcCeeecEEEEEcCCCcccCCCchhhHHHHHHHHHcC
Q psy14342 259 VPLVTNAVLEEHHLIVGVAVVVDPGVVPINSRGEKQRMHLRDGFLAD 305 (316)
Q Consensus 259 ~~~~~~~l~~~~~~~~~~~~~~~~~~lP~t~~gKi~r~~l~~~~~~~ 305 (316)
.+.+++.+. .+..+ ..+.+++ ++|+|++||++|++|++.+.++
T Consensus 495 ~~~l~~~l~-~~~~p-~~i~~~~--~~P~t~~GKi~r~~L~~~~~~~ 537 (537)
T PLN02246 495 KQFVAKQVV-FYKRI-HKVFFVD--SIPKAPSGKILRKDLRAKLAAG 537 (537)
T ss_pred HHHHHhhCc-Ccccc-ceEEEec--cCCCCCcchhhHHHHHHHHhcC
Confidence 666666555 34443 3455554 8999999999999999988753
|
|
| >TIGR03443 alpha_am_amid L-aminoadipate-semialdehyde dehydrogenase | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.3e-38 Score=328.22 Aligned_cols=296 Identities=12% Similarity=0.069 Sum_probs=208.4
Q ss_pred CeEEEEeccCCCCCceEEEEeHHHHHHHHHHHHHHhcCCCCCceEEecCCcCChhhhHHHHhhhhcCceeeeeCCccccc
Q psy14342 1 MLAYLDFSVSTTGMLAGIKMSHAAVTSLCRSMKLACELYPSRHIALCLDPYCGLGFALWVLSSVYSGHHSILIPPSEVEV 80 (316)
Q Consensus 1 ~~a~i~~TSGTTG~PK~V~~t~~~l~~~~~~~~~~~~~~~~d~~l~~~p~~h~~g~~~~~~~~l~~G~~~v~~~~~~~~~ 80 (316)
|++||+|||||||.||||+++|+++...+..+...+++.++|+++.+.|++|+.++.. +|.+++.|+++++.+.. ...
T Consensus 416 d~a~ii~TSGSTG~PKgV~~sh~~l~~~~~~~~~~~~~~~~d~~~~~~~~~~d~~~~~-i~~~L~~G~~l~~~~~~-~~~ 493 (1389)
T TIGR03443 416 SNPTLSFTSGSEGIPKGVLGRHFSLAYYFPWMAKRFGLSENDKFTMLSGIAHDPIQRD-MFTPLFLGAQLLVPTAD-DIG 493 (1389)
T ss_pred CceEEEECCCCCCCCCEEEeccHHHHHHHHHHHHhcCCCCCCEEEEecCceecchHHH-HHHHHhCCCEEEEcChh-hcc
Confidence 5799999999999999999999999999888888899999999999999999988876 89999999999887544 345
Q ss_pred ChHHHHHHHhccceeeEEecccchhhHHhhHH-hhhhhcccccccc------------------cccccccchhccCCCC
Q psy14342 81 NPALWLSAVSQYRVRDTFCSYGMLAGIKMSHA-AVTSLCRSMKLAC------------------ELYPSRHIALCLDPYC 141 (316)
Q Consensus 81 ~~~~~~~~~~~~~~t~~~~~~~~~~~l~~~~~-~~~~~~~~~~ls~------------------e~~~~yG~te~~~~~~ 141 (316)
+|..+++.++++++|+++.+|+++..+..... .... .+.+-+.+ .+++.||+||++....
T Consensus 494 ~~~~l~~~i~~~~vt~~~~~Ps~~~~l~~~~~~~~~~-lr~~~~gGe~l~~~~~~~~~~~~~~~~l~n~YG~TE~~~~~~ 572 (1389)
T TIGR03443 494 TPGRLAEWMAKYGATVTHLTPAMGQLLSAQATTPIPS-LHHAFFVGDILTKRDCLRLQTLAENVCIVNMYGTTETQRAVS 572 (1389)
T ss_pred CHHHHHHHHHHhCCeEEEeCHHHHHHHHhcccccCCC-ccEEEEecccCCHHHHHHHHHhCCCCEEEECccCCccceeEE
Confidence 78899999999999999999998765542211 1111 11111111 3889999999864322
Q ss_pred CCCc--e---E-EEEeeeccCcccccCCCce-EEecCc-------------eEEecC---CCcccCCCcCC---------
Q psy14342 142 GLGF--A---L-WVLSSVYSGHHSILIPPSE-VEVNPA-------------LWLSAV---SQYRVRDTFCS--------- 189 (316)
Q Consensus 142 ~~~~--~---~-~~~~~~~~g~~~~~~~g~~-~i~d~~-------------l~v~~~---~gY~~~~~~~~--------- 189 (316)
.... . . +........+.|.++++++ .++|++ |+++|+ .|||++++.+.
T Consensus 573 ~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~ivd~~~~~~~~~~G~~GEL~i~G~~v~~GY~~~p~~t~~~f~~~~~~ 652 (1389)
T TIGR03443 573 YFEIPSRSSDSTFLKNLKDVMPAGKGMKNVQLLVVNRNDRTQTCGVGEVGEIYVRAGGLAEGYLGLPELNAEKFVNNWFV 652 (1389)
T ss_pred EEEccccccccchhhcccCcCcCCCccCCCEEEEECCccCCCcCCCCCceEEEecccccchhcCCChhHhhhhccCCccc
Confidence 1110 0 0 0000011224566899998 887742 999999 89999875442
Q ss_pred ------------------------------CCceeeec-Cc---CCcccceeEECCcccChHhHHHHHHHhccccceeEE
Q psy14342 190 ------------------------------CNGALYQG-AE---RLALDETIMLRGMRYHPIDIENSVMRAHKKIAECAV 235 (316)
Q Consensus 190 ------------------------------~d~g~~~~-g~---~GR~dd~i~~~G~~v~p~eIE~~l~~~~p~v~~~~v 235 (316)
+|.|++++ |. +||.||+||++|+||+|.|||++|.+ ||.|.+++|
T Consensus 653 ~~~~~~~~~~~~~~~~~~~~~~~~~~~y~TGDlg~~~~dG~l~~~GR~dd~Iki~G~rI~p~eIE~~l~~-~p~V~~a~v 731 (1389)
T TIGR03443 653 DPSHWIDLDKENNKPEREFWLGPRDRLYRTGDLGRYLPDGNVECCGRADDQVKIRGFRIELGEIDTHLSQ-HPLVRENVT 731 (1389)
T ss_pred CcccccccccccccccccccCCCccceeecCCceeEcCCCCEEEecccCCEEEeCcEEecHHHHHHHHHh-CcchheeEE
Confidence 14444433 33 99999999999999999999999999 999999988
Q ss_pred EeeC-----CcEEEEEEecCCchh-----------------------hcchHHHHHHHHHHhcCeeecEEEEEcCCCccc
Q psy14342 236 FTWT-----NLLVVVVELDGNESE-----------------------ALDLVPLVTNAVLEEHHLIVGVAVVVDPGVVPI 287 (316)
Q Consensus 236 ~~~~-----~~~~~~v~~~~~~~~-----------------------~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~lP~ 287 (316)
++.. +.+++++++...... ..+..+.+++.+.+.......+..++..+.||+
T Consensus 732 ~~~~~~~~~~~lva~vv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~Lp~y~~P~~~~~~~~lP~ 811 (1389)
T TIGR03443 732 LVRRDKDEEPTLVSYIVPQDKSDELEEFKSEVDDEESSDPVVKGLIKYRKLIKDIREYLKKKLPSYAIPTVIVPLKKLPL 811 (1389)
T ss_pred EEeeCCCCCeEEEEEEeccCccccccccccccccccccccchhhhhhhhhhHHHHHHHHHhhCCcccCCceEEEcccCCC
Confidence 8762 246666655421100 001233444444433222222233444559999
Q ss_pred CCCchhhHHHHHH
Q psy14342 288 NSRGEKQRMHLRD 300 (316)
Q Consensus 288 t~~gKi~r~~l~~ 300 (316)
|++||++|++|++
T Consensus 812 t~~GKidr~~L~~ 824 (1389)
T TIGR03443 812 NPNGKVDKPALPF 824 (1389)
T ss_pred CCCccccHhhcCC
Confidence 9999999999964
|
Members of this protein family are L-aminoadipate-semialdehyde dehydrogenase (EC 1.2.1.31), product of the LYS2 gene. It is also called alpha-aminoadipate reductase. In fungi, lysine is synthesized via aminoadipate. Currently, all members of this family are fungal. |
| >COG1022 FAA1 Long-chain acyl-CoA synthetases (AMP-forming) [Lipid metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.2e-38 Score=292.08 Aligned_cols=301 Identities=14% Similarity=0.123 Sum_probs=216.4
Q ss_pred CeEEEEeccCCCCCceEEEEeHHHHHHHHHHHHHHhc-CCCCCceEEecCCcCChhhhHHHHhhhhcCceeeeeCCcccc
Q psy14342 1 MLAYLDFSVSTTGMLAGIKMSHAAVTSLCRSMKLACE-LYPSRHIALCLDPYCGLGFALWVLSSVYSGHHSILIPPSEVE 79 (316)
Q Consensus 1 ~~a~i~~TSGTTG~PK~V~~t~~~l~~~~~~~~~~~~-~~~~d~~l~~~p~~h~~g~~~~~~~~l~~G~~~v~~~~~~~~ 79 (316)
|+|.|+|||||||.||||++||+|+.+++.++...+. +.++|+.++.+|++|++..++.....+..|+++...
T Consensus 192 DlatiiYTSGTTG~PKGVmLth~N~~~~v~~~~~~~~~~~~~d~~LsfLPlaHi~Er~~~~~~~~~~g~~~~~~------ 265 (613)
T COG1022 192 DLATIIYTSGTTGTPKGVMLTHRNLLAQVAGIDEVLPPIGPGDRVLSFLPLAHIFERAFEGGLALYGGVTVLFK------ 265 (613)
T ss_pred ceEEEEEcCCCCCCCceEEEehHHHHHHHHHHHhhCCCCCCCcEEEEeCcHHHHHHHHHHHHHHhhcceEEEec------
Confidence 6899999999999999999999999999999999997 999999999999999999987655555555555443
Q ss_pred cChHHHHHHHhccceeeEEecccchhhHHhhHH-hhhhh-----------------------c----------------c
Q psy14342 80 VNPALWLSAVSQYRVRDTFCSYGMLAGIKMSHA-AVTSL-----------------------C----------------R 119 (316)
Q Consensus 80 ~~~~~~~~~~~~~~~t~~~~~~~~~~~l~~~~~-~~~~~-----------------------~----------------~ 119 (316)
.++..++..+.++++|++..+|.++..+..... +.... . +
T Consensus 266 ~~~~~~~~dl~~~rPt~m~~VPRvwE~i~~~I~~kv~~~~~~~~~if~~a~~~~~~~~~~~~~~~~~~~~~~~~d~LVf~ 345 (613)
T COG1022 266 EDPRTLLEDLKEVRPTVMIGVPRVWEKVYKGIMEKVAKAPAVRRKLFRWALKVAYKKISRALLGGGPLSWLLVADRLVFR 345 (613)
T ss_pred CCHHHHHHHHHHhCCeEEeechHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHHhhhcccCCcchhhhhhHHHHH
Confidence 368899999999999999999988764322111 10000 0 0
Q ss_pred c----------ccccc-----------------cccccccchhccCCCCCCCceEEEEeeeccCcccccCCCce-EEecC
Q psy14342 120 S----------MKLAC-----------------ELYPSRHIALCLDPYCGLGFALWVLSSVYSGHHSILIPPSE-VEVNP 171 (316)
Q Consensus 120 ~----------~~ls~-----------------e~~~~yG~te~~~~~~~~~~~~~~~~~~~~g~~~~~~~g~~-~i~d~ 171 (316)
+ ..+++ .+.++||+||++...+..+| .....|..|.|+||++ ++.|.
T Consensus 346 Kir~~lGgri~~~~sGGa~l~~~~~~f~~~lGi~i~eGYGlTEts~~~~v~~~-----~~~~~gtvG~p~p~~evKI~d~ 420 (613)
T COG1022 346 KIRDALGGRIRYALSGGAPLSPELLHFFRSLGIPILEGYGLTETSAVVSVNPP-----DRFVLGTVGKPLPGIEVKIADD 420 (613)
T ss_pred HHHHHhCCcEEEEEecCCcCCHHHHHHHHHcCCCeEEEecccccccceEEccc-----cCcccCCcCCcCCCceEEEccC
Confidence 0 00111 18899999999987776654 2233444455899999 88876
Q ss_pred c-eEEecC---CCcccCCCcCCC---CceeeecCc------------CCcccceeEE-CCcccChHhHHHHHHHhccccc
Q psy14342 172 A-LWLSAV---SQYRVRDTFCSC---NGALYQGAE------------RLALDETIML-RGMRYHPIDIENSVMRAHKKIA 231 (316)
Q Consensus 172 ~-l~v~~~---~gY~~~~~~~~~---d~g~~~~g~------------~GR~dd~i~~-~G~~v~p~eIE~~l~~~~p~v~ 231 (316)
. |++||| +|||++|++|++ ..||+++|+ +||.+|+|+. +|++|.|+.||+.+.+ +|.|.
T Consensus 421 GEilVRG~~Vm~GYyk~pe~Taeaf~~DGWf~TGDlg~~d~~g~L~i~gRkK~~i~l~~GknIaP~~IE~~l~~-~~~I~ 499 (613)
T COG1022 421 GEILVRGPNVMKGYYKNPEATAEAFTEDGWFRTGDLGELDEDGYLVITGRKKELIKLSNGKNIAPEPIESKLAK-SPLIE 499 (613)
T ss_pred ceEEEecchhcchhcCChHHHhhhccccCCcccCceeEEcCCCcEEEeecccceEECCCCcccChHHHHHHHhc-CCCee
Confidence 5 999999 999999999877 245554332 9999999997 9999999999999999 99999
Q ss_pred eeEEEeeCC-cEEEEEEecCCchh-------------h------cchHHHHHHHHHHhc------CeeecEEEEEcC---
Q psy14342 232 ECAVFTWTN-LLVVVVELDGNESE-------------A------LDLVPLVTNAVLEEH------HLIVGVAVVVDP--- 282 (316)
Q Consensus 232 ~~~v~~~~~-~~~~~v~~~~~~~~-------------~------~~l~~~~~~~l~~~~------~~~~~~~~~~~~--- 282 (316)
+++|++.++ .+.+++.+...... . ..+++.+...+.+-. ... ..+.+...
T Consensus 500 qi~vvg~~k~~~~AlIvp~~~~l~~~a~~~~~~~~~~~~~l~~~~~l~~~~~~~i~~~~~~~~~~E~i-~~~~~~~~~~t 578 (613)
T COG1022 500 QICVVGDDKKFLVALIVPDFDALEKWAESLNKVISASREELARDPKLLKLILPRVNKGNKRLFGFEQI-KKFVLLPKEFT 578 (613)
T ss_pred EEEEEecCCcceEEEEeCCHHHHHHHHHhccccccCCHHHHhhCHHHHHHHHHHHHHHhhcccchhhh-heeeecccccc
Confidence 999999544 46666666543211 0 123333333222111 111 11222221
Q ss_pred -CCcccCCCchhhHHHHHHHHHcCCCCcchhhcc
Q psy14342 283 -GVVPINSRGEKQRMHLRDGFLADQLDPIYVAYN 315 (316)
Q Consensus 283 -~~lP~t~~gKi~r~~l~~~~~~~~~~~~~~~~~ 315 (316)
+.--.|++-|++|+.+.+.|.+ +++.+|....
T Consensus 579 ~~~~~~t~t~klkR~~i~~~~~~-~i~~~y~~~~ 611 (613)
T COG1022 579 PENGELTPTLKLKRHVILDRYKD-EIEAVYSRQS 611 (613)
T ss_pred cccCccccchhhhHHHHHHhhhh-HHHHHhhccc
Confidence 1234799999999999999986 8888876653
|
|
| >PRK13295 cyclohexanecarboxylate-CoA ligase; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.2e-37 Score=292.94 Aligned_cols=292 Identities=17% Similarity=0.128 Sum_probs=216.1
Q ss_pred CeEEEEeccCCCCCceEEEEeHHHHHHHHHHHHHHhcCCCCCceEEecCCcCChhhhHHHHhhhhcCceeeeeCCccccc
Q psy14342 1 MLAYLDFSVSTTGMLAGIKMSHAAVTSLCRSMKLACELYPSRHIALCLDPYCGLGFALWVLSSVYSGHHSILIPPSEVEV 80 (316)
Q Consensus 1 ~~a~i~~TSGTTG~PK~V~~t~~~l~~~~~~~~~~~~~~~~d~~l~~~p~~h~~g~~~~~~~~l~~G~~~v~~~~~~~~~ 80 (316)
++++|+|||||||.||+|+++|+++..++......+++.++|+++.++|++|..|++..++.++..|+++++.+. .
T Consensus 198 ~~a~i~~TSGTTG~PK~v~~s~~~l~~~~~~~~~~~~~~~~~~~l~~~p~~h~~g~~~~~~~~l~~G~~~~~~~~----~ 273 (547)
T PRK13295 198 DVTQLIYTSGTTGEPKGVMHTANTLMANIVPYAERLGLGADDVILMASPMAHQTGFMYGLMMPVMLGATAVLQDI----W 273 (547)
T ss_pred ceeEEEeCCCCCCCCCEEEeccHHHHHHHHHHHHHhCCCCCCeEEEecCchhhhhHHHHHHHHHHcCCeEEeCCC----C
Confidence 579999999999999999999999998888888888999999999999999999988888999999999998753 2
Q ss_pred ChHHHHHHHhccceeeEEecccchhhHHhhHHhhhh---hcccccccc-----------------cccccccchhccCCC
Q psy14342 81 NPALWLSAVSQYRVRDTFCSYGMLAGIKMSHAAVTS---LCRSMKLAC-----------------ELYPSRHIALCLDPY 140 (316)
Q Consensus 81 ~~~~~~~~~~~~~~t~~~~~~~~~~~l~~~~~~~~~---~~~~~~ls~-----------------e~~~~yG~te~~~~~ 140 (316)
++..+++.++++++++++.+|+++..+......... ..+.+-.++ .+++.||+||++...
T Consensus 274 ~~~~~~~~l~~~~vt~~~~~p~~~~~l~~~~~~~~~~~~~l~~~~~~G~~l~~~~~~~~~~~~~~~~~~~YG~TE~~~~~ 353 (547)
T PRK13295 274 DPARAAELIRTEGVTFTMASTPFLTDLTRAVKESGRPVSSLRTFLCAGAPIPGALVERARAALGAKIVSAWGMTENGAVT 353 (547)
T ss_pred CHHHHHHHHHHcCCcEEEecHHHHHHHHhcccccCCCcccceEEEEecCCCCHHHHHHHHHHhCCCeEEeccCCCCCCee
Confidence 688999999999999988888887655433221100 011111111 288899999986432
Q ss_pred CCCCceEEEEeeeccCcccccCCCce-EEecCc-----------eEEecC---CCcccCCCcCCC---------Cceeee
Q psy14342 141 CGLGFALWVLSSVYSGHHSILIPPSE-VEVNPA-----------LWLSAV---SQYRVRDTFCSC---------NGALYQ 196 (316)
Q Consensus 141 ~~~~~~~~~~~~~~~g~~~~~~~g~~-~i~d~~-----------l~v~~~---~gY~~~~~~~~~---------d~g~~~ 196 (316)
....... .....++.|.+++|++ +++|++ |+++|+ .||+++++.+.. |.|+++
T Consensus 354 ~~~~~~~---~~~~~~~~G~~~~~~~v~i~d~~~~~~~~g~~Gel~v~g~~~~~gY~~~~~~t~~~~~g~~~TGD~~~~~ 430 (547)
T PRK13295 354 LTKLDDP---DERASTTDGCPLPGVEVRVVDADGAPLPAGQIGRLQVRGCSNFGGYLKRPQLNGTDADGWFDTGDLARID 430 (547)
T ss_pred eccCCCc---chhccCccccccCCcEEEEECCCCCCCCCCCCCeEEEEcCcccccccCCccccccCCCCCeecceEEEEc
Confidence 2111000 0011124455889999 887754 899999 899999776532 455554
Q ss_pred c-Cc---CCcccceeEECCcccChHhHHHHHHHhccccceeEEEeeC-----CcEEEEEEecCCch-hhcchHHHHHH-H
Q psy14342 197 G-AE---RLALDETIMLRGMRYHPIDIENSVMRAHKKIAECAVFTWT-----NLLVVVVELDGNES-EALDLVPLVTN-A 265 (316)
Q Consensus 197 ~-g~---~GR~dd~i~~~G~~v~p~eIE~~l~~~~p~v~~~~v~~~~-----~~~~~~v~~~~~~~-~~~~l~~~~~~-~ 265 (316)
+ |. .||.||+||++|++|+|.|||++|.+ |+.|.+++|++.. +.+++++++.+... +.+++.+.+++ .
T Consensus 431 ~~g~l~~~gR~~~~i~~~G~~v~p~~IE~~l~~-~~~v~~~~v~~~~~~~~g~~~~~~v~~~~~~~~~~~~l~~~~~~~~ 509 (547)
T PRK13295 431 ADGYIRISGRSKDVIIRGGENIPVVEIEALLYR-HPAIAQVAIVAYPDERLGERACAFVVPRPGQSLDFEEMVEFLKAQK 509 (547)
T ss_pred CCceEEEEeccCCeEEECCEEECHHHHHHHHHh-CCCeeeEEEEeeecCCCCcEEEEEEEeCCCCCCCHHHHHHHHHhcc
Confidence 3 33 99999999999999999999999999 9999999999873 45777776654321 22455555554 2
Q ss_pred HHHhcCeeecEEEEEcCCCcccCCCchhhHHHHHHHHHc
Q psy14342 266 VLEEHHLIVGVAVVVDPGVVPINSRGEKQRMHLRDGFLA 304 (316)
Q Consensus 266 l~~~~~~~~~~~~~~~~~~lP~t~~gKi~r~~l~~~~~~ 304 (316)
+. .+..| ..+.+++ +||+|++||++|++|++.+.+
T Consensus 510 l~-~~~~P-~~i~~v~--~lP~t~sgK~~r~~L~~~~~~ 544 (547)
T PRK13295 510 VA-KQYIP-ERLVVRD--ALPRTPSGKIQKFRLREMLRG 544 (547)
T ss_pred Cc-cccCC-cEEEEec--cCCCCCCccccHHHHHHHHhc
Confidence 33 33333 3455554 999999999999999988865
|
|
| >PRK06839 acyl-CoA synthetase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.3e-37 Score=289.35 Aligned_cols=292 Identities=13% Similarity=0.092 Sum_probs=218.1
Q ss_pred CeEEEEeccCCCCCceEEEEeHHHHHHHHHHHHHHhcCCCCCceEEecCCcCChhhhHHHHhhhhcCceeeeeCCccccc
Q psy14342 1 MLAYLDFSVSTTGMLAGIKMSHAAVTSLCRSMKLACELYPSRHIALCLDPYCGLGFALWVLSSVYSGHHSILIPPSEVEV 80 (316)
Q Consensus 1 ~~a~i~~TSGTTG~PK~V~~t~~~l~~~~~~~~~~~~~~~~d~~l~~~p~~h~~g~~~~~~~~l~~G~~~v~~~~~~~~~ 80 (316)
++++|+|||||||.||+|.++|.++..++......+++.++|+++.++|++|.+|+...++.++..|+++++.+..
T Consensus 150 ~~~~i~~TSGTTG~PK~v~~s~~~l~~~~~~~~~~~~~~~~d~~l~~~p~~~~~g~~~~~~~~l~~g~~~~~~~~~---- 225 (496)
T PRK06839 150 ASFIICYTSGTTGKPKGAVLTQENMFWNALNNTFAIDLTMHDRSIVLLPLFHIGGIGLFAFPTLFAGGVIIVPRKF---- 225 (496)
T ss_pred CcEEEEeCCCCCCCCcEEEEEhHHHHHHHHHHHHHcCCCCCCeEEEeeCCcchhhHHHHHHHHHhcCcEEEEccCC----
Confidence 5789999999999999999999999877766667788889999999999999999887778899999998886532
Q ss_pred ChHHHHHHHhccceeeEEecccchhhHHhhHHhhhhhccccc---ccc----------------cccccccchhccCCCC
Q psy14342 81 NPALWLSAVSQYRVRDTFCSYGMLAGIKMSHAAVTSLCRSMK---LAC----------------ELYPSRHIALCLDPYC 141 (316)
Q Consensus 81 ~~~~~~~~~~~~~~t~~~~~~~~~~~l~~~~~~~~~~~~~~~---ls~----------------e~~~~yG~te~~~~~~ 141 (316)
+|..+++.+++++++++..+|+++..+.............++ .++ .+.+.||+||++....
T Consensus 226 ~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~lr~~~~gG~~~~~~~~~~~~~~g~~~~~~YG~tE~~~~~~ 305 (496)
T PRK06839 226 EPTKALSMIEKHKVTVVMGVPTIHQALINCSKFETTNLQSVRWFYNGGAPCPEELMREFIDRGFLFGQGFGMTETSPTVF 305 (496)
T ss_pred CHHHHHHHHHhhCCeEEEehHHHHHHHHhCcccccCCCcccceEEECCCCCCHHHHHHHHHhCCeeEeeccCCCCCcceE
Confidence 688999999999999999999988766543321110011111 111 2778899999875322
Q ss_pred CCCceEEEEeeeccCcccccCCCce-EEecCc-----------eEEecC---CCcccCCCcC----------CCCceeee
Q psy14342 142 GLGFALWVLSSVYSGHHSILIPPSE-VEVNPA-----------LWLSAV---SQYRVRDTFC----------SCNGALYQ 196 (316)
Q Consensus 142 ~~~~~~~~~~~~~~g~~~~~~~g~~-~i~d~~-----------l~v~~~---~gY~~~~~~~----------~~d~g~~~ 196 (316)
...+.. .....++.|.|++|.+ +++|++ |+++|+ .|||++++.+ ++|.|+++
T Consensus 306 ~~~~~~---~~~~~~~~G~p~~~~~~~i~d~~~~~~~~g~~Gel~v~~~~~~~gy~~~~~~~~~~~~~g~~~TGDl~~~~ 382 (496)
T PRK06839 306 MLSEED---ARRKVGSIGKPVLFCDYELIDENKNKVEVGEVGELLIRGPNVMKEYWNRPDATEETIQDGWLCTGDLARVD 382 (496)
T ss_pred eccccc---ccccCCCCcccCCCceEEEECCCcCCCCCCCceEEEEECCCcchhhcCChHHHHHHHcCCCeeecceEEEc
Confidence 111100 0112234455899999 888753 999999 8999987654 33666665
Q ss_pred c-Cc---CCcccceeEECCcccChHhHHHHHHHhccccceeEEEeeC-----CcEEEEEEecCCc-hhhcchHHHHHHHH
Q psy14342 197 G-AE---RLALDETIMLRGMRYHPIDIENSVMRAHKKIAECAVFTWT-----NLLVVVVELDGNE-SEALDLVPLVTNAV 266 (316)
Q Consensus 197 ~-g~---~GR~dd~i~~~G~~v~p~eIE~~l~~~~p~v~~~~v~~~~-----~~~~~~v~~~~~~-~~~~~l~~~~~~~l 266 (316)
+ |. .||.||+||.+|++|+|.|||++|.+ +|.|.+++|++.. +.+++++...+.. .+.+++.++++..+
T Consensus 383 ~~g~~~~~GR~~d~i~~~G~~v~p~~iE~~l~~-~~~v~~~~v~~~~~~~~g~~~~~~v~~~~~~~~~~~~l~~~~~~~l 461 (496)
T PRK06839 383 EDGFVYIVGRKKEMIISGGENIYPLEVEQVINK-LSDVYEVAVVGRQHVKWGEIPIAFIVKKSSSVLIEKDVIEHCRLFL 461 (496)
T ss_pred CCCcEEEeccccceEEECCEEECHHHHHHHHHh-CCCeeEEEEEeccccccCceEEEEEEECCCCCCCHHHHHHHHHhhC
Confidence 4 33 79999999999999999999999999 9999999999984 3466666665533 23356777777766
Q ss_pred HHhcCeeecEEEEEcCCCcccCCCchhhHHHHHHHHHc
Q psy14342 267 LEEHHLIVGVAVVVDPGVVPINSRGEKQRMHLRDGFLA 304 (316)
Q Consensus 267 ~~~~~~~~~~~~~~~~~~lP~t~~gKi~r~~l~~~~~~ 304 (316)
. .+..| ..+.+++ ++|+|.+||++|++|++...+
T Consensus 462 ~-~~~~P-~~~~~v~--~~P~t~~GKi~r~~l~~~~~~ 495 (496)
T PRK06839 462 A-KYKIP-KEIVFLK--ELPKNATGKIQKAQLVNQLKS 495 (496)
T ss_pred c-CCCCC-cEEEEec--cCCCCccccccHHHHHHHhhc
Confidence 6 45554 4555554 899999999999999987654
|
|
| >TIGR01734 D-ala-DACP-lig D-alanine--poly(phosphoribitol) ligase, subunit 1 | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.2e-37 Score=290.68 Aligned_cols=300 Identities=12% Similarity=0.086 Sum_probs=210.9
Q ss_pred CeEEEEeccCCCCCceEEEEeHHHHHHHHHHHHHHhcCCCCCceEEecCCcCChhhhHHHHhhhhcCceeeeeCCccccc
Q psy14342 1 MLAYLDFSVSTTGMLAGIKMSHAAVTSLCRSMKLACELYPSRHIALCLDPYCGLGFALWVLSSVYSGHHSILIPPSEVEV 80 (316)
Q Consensus 1 ~~a~i~~TSGTTG~PK~V~~t~~~l~~~~~~~~~~~~~~~~d~~l~~~p~~h~~g~~~~~~~~l~~G~~~v~~~~~~~~~ 80 (316)
|+++|+|||||||.||+|.++|+++..........+++..+|+++.++|++|..+++. ++.++..|+++++.++.. ..
T Consensus 142 ~~~~il~TSGTTG~PK~v~~s~~~~~~~~~~~~~~~~~~~~~~~l~~~p~~~~~~~~~-~~~~l~~G~~~~~~~~~~-~~ 219 (502)
T TIGR01734 142 DNYYIIYTSGSTGNPKGVQISHDNLVSFTNWMLADFPLSEGKQFLNQAPFSFDLSVMD-LYPCLASGGTLHCLDKDI-TN 219 (502)
T ss_pred CeEEEEECCCCCCCCCEEEEecHHHHHHHHHHHHhCCCCCCceEEeecCceechhHHH-HHHHHHCCCEEEEcCHHH-hc
Confidence 5789999999999999999999999988888888888889999999999999988876 889999999999886543 34
Q ss_pred ChHHHHHHHhccceeeEEecccchhhHHhhHHhhh---hhcccccccc------------------cccccccchhccCC
Q psy14342 81 NPALWLSAVSQYRVRDTFCSYGMLAGIKMSHAAVT---SLCRSMKLAC------------------ELYPSRHIALCLDP 139 (316)
Q Consensus 81 ~~~~~~~~~~~~~~t~~~~~~~~~~~l~~~~~~~~---~~~~~~~ls~------------------e~~~~yG~te~~~~ 139 (316)
++..+++.+.+++++.+..+|+++..+........ ...+.+-.++ .+++.||+||++..
T Consensus 220 ~~~~~~~~i~~~~~~~~~~~p~~~~~~l~~~~~~~~~~~~l~~~~~~G~~~~~~~~~~~~~~~~~~~~~~~yG~tE~~~~ 299 (502)
T TIGR01734 220 NFKLLFEELPKTGLNVWVSTPSFVDMCLLDPNFNQENYPHLTHFLFCGEELPVKTAKALLERFPKATIYNTYGPTEATVA 299 (502)
T ss_pred CHHHHHHHHHHcCCeEEEEChhHHHHHHhccccccccCCcccEEEEcCCcCCHHHHHHHHHHCCCcEEEeCccCCcceEE
Confidence 78899999999999999899887654332211100 0011111111 27889999998643
Q ss_pred CCCCCceEEEEeeeccCcccccCCCce-EEecCc-----------eEEecC---CCcccCCCcCC--------------C
Q psy14342 140 YCGLGFALWVLSSVYSGHHSILIPPSE-VEVNPA-----------LWLSAV---SQYRVRDTFCS--------------C 190 (316)
Q Consensus 140 ~~~~~~~~~~~~~~~~g~~~~~~~g~~-~i~d~~-----------l~v~~~---~gY~~~~~~~~--------------~ 190 (316)
.................+.+.++||++ +++|++ |+++|+ .||+++++.+. +
T Consensus 300 ~~~~~~~~~~~~~~~~~~vg~~~~~~~~~i~~~~~~~~~~g~~Gel~v~g~~~~~gy~~~~~~~~~~~~~~~~~~~~~TG 379 (502)
T TIGR01734 300 VTSVKITQEILDQYPRLPIGFAKPDMNLFIMDEEGEPLPEGEKGEIVIVGPSVSKGYLNNPEKTAEAFFSHEGQPAYRTG 379 (502)
T ss_pred EEEEEccccccccCCccccccccCCCEEEEECCCCCCCCCCCeeEEEEccccccccccCCcccchHhheeCCCcEEEECC
Confidence 221110000000011123455789999 888763 999999 89999876543 2
Q ss_pred CceeeecCc---CCcccceeEECCcccChHhHHHHHHHhccccceeEEEeeC------CcEEEEEEecCCchh-hcchHH
Q psy14342 191 NGALYQGAE---RLALDETIMLRGMRYHPIDIENSVMRAHKKIAECAVFTWT------NLLVVVVELDGNESE-ALDLVP 260 (316)
Q Consensus 191 d~g~~~~g~---~GR~dd~i~~~G~~v~p~eIE~~l~~~~p~v~~~~v~~~~------~~~~~~v~~~~~~~~-~~~l~~ 260 (316)
|.|+++++. .||.||+|+++|++|+|.|||++|.+ +|.|.+|++++.. +.+++++........ ..++.+
T Consensus 380 Dlg~~~~~~l~i~GR~~d~i~~~G~~v~~~~IE~~l~~-~~~v~~~~vv~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~ 458 (502)
T TIGR01734 380 DAGTITDGQLFYQGRLDFQIKLHGYRIELEDIEFNLRQ-SSYIESAVVVPKYNKDHKVEYLIAAIVPETEDFEKEFQLTK 458 (502)
T ss_pred CEEEEECCEEEEeccccCeEEECcEEeCHHHHHHHHHc-CCCccEEEEEEEEcCCCCceEEEEEEEecccccccchhhHH
Confidence 555555444 89999999999999999999999999 9999999999852 345666655443222 123334
Q ss_pred HHHHHHHHhcCeeecEEEEEcCCCcccCCCchhhHHHHHHHHH
Q psy14342 261 LVTNAVLEEHHLIVGVAVVVDPGVVPINSRGEKQRMHLRDGFL 303 (316)
Q Consensus 261 ~~~~~l~~~~~~~~~~~~~~~~~~lP~t~~gKi~r~~l~~~~~ 303 (316)
++++.+.+.......+..++.++++|+|++||++|++|++.+.
T Consensus 459 ~i~~~~~~~l~~~~~P~~~~~v~~lP~t~~gKv~r~~l~~~~~ 501 (502)
T TIGR01734 459 AIKKELKKSLPAYMIPRKFIYRDQLPLTANGKIDRKALAEEVN 501 (502)
T ss_pred HHHHHHhhhChhhcCCcEEEEccccCCCCCCcccHHHHHHhhc
Confidence 4444444332221222333444599999999999999998764
|
This model represents the enzyme (also called D-alanine-D-alanyl carrier protein ligase) which activates D-alanine as an adenylate via the reaction D-ala + ATP - D-ala-AMP + PPi, and further catalyzes the condensation of the amino acid adenylate with the D-alanyl carrier protein (D-ala-ACP). The D-alanine is then further transferred to teichoic acid in the biosynthesis of lipoteichoic acid (LTA) and wall teichoic acid (WTA) in gram positive bacteria, both polysacchatides. |
| >PRK06155 crotonobetaine/carnitine-CoA ligase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.7e-37 Score=292.95 Aligned_cols=288 Identities=17% Similarity=0.141 Sum_probs=217.1
Q ss_pred CeEEEEeccCCCCCceEEEEeHHHHHHHHHHHHHHhcCCCCCceEEecCCcCChhhhHHHHhhhhcCceeeeeCCccccc
Q psy14342 1 MLAYLDFSVSTTGMLAGIKMSHAAVTSLCRSMKLACELYPSRHIALCLDPYCGLGFALWVLSSVYSGHHSILIPPSEVEV 80 (316)
Q Consensus 1 ~~a~i~~TSGTTG~PK~V~~t~~~l~~~~~~~~~~~~~~~~d~~l~~~p~~h~~g~~~~~~~~l~~G~~~v~~~~~~~~~ 80 (316)
|+++|+|||||||.||+|.++|+++..........++++++|+++.++|++|.+++.. ++.++..|+++++.++.
T Consensus 181 ~~a~il~TSGTTG~PK~V~~t~~~~~~~~~~~~~~~~~~~~~~~l~~~pl~~~~~~~~-~~~~l~~G~~~~~~~~~---- 255 (542)
T PRK06155 181 DTAAILYTSGTTGPSKGVCCPHAQFYWWGRNSAEDLEIGADDVLYTTLPLFHTNALNA-FFQALLAGATYVLEPRF---- 255 (542)
T ss_pred CeEEEEECCCCCCCCcEEEEEHHHHHHHHHHHHHhcCCCCCCEEEEecCHHHHHHHHH-HHHHHHcCceEEeeCCC----
Confidence 5799999999999999999999999888777788889999999999999999999886 78999999999987643
Q ss_pred ChHHHHHHHhccceeeEEecccchhhHHhhHHhhhhhccccc--cc----------------ccccccccchhccCCCCC
Q psy14342 81 NPALWLSAVSQYRVRDTFCSYGMLAGIKMSHAAVTSLCRSMK--LA----------------CELYPSRHIALCLDPYCG 142 (316)
Q Consensus 81 ~~~~~~~~~~~~~~t~~~~~~~~~~~l~~~~~~~~~~~~~~~--ls----------------~e~~~~yG~te~~~~~~~ 142 (316)
+|..+++.+++++++.++.+|+++..+.............+. ++ ..+++.||+||++.....
T Consensus 256 ~~~~~~~~l~~~~~t~~~~~p~~~~~l~~~~~~~~~~~~~l~~~~~g~~~~~~~~~~~~~~~~~v~~~YG~tE~~~~~~~ 335 (542)
T PRK06155 256 SASGFWPAVRRHGATVTYLLGAMVSILLSQPARESDRAHRVRVALGPGVPAALHAAFRERFGVDLLDGYGSTETNFVIAV 335 (542)
T ss_pred CHHHHHHHHHHhCCcEEEchHHHHHHHHcCcCccccccCceEEEEEcCCCHHHHHHHHHHcCCCEEeeecccccCccccC
Confidence 688999999999999999888877655433211000000010 01 138889999998754432
Q ss_pred CCceEEEEeeeccCcccccCCCce-EEecCc-----------eEEecC------CCcccCCCcC----------CCCcee
Q psy14342 143 LGFALWVLSSVYSGHHSILIPPSE-VEVNPA-----------LWLSAV------SQYRVRDTFC----------SCNGAL 194 (316)
Q Consensus 143 ~~~~~~~~~~~~~g~~~~~~~g~~-~i~d~~-----------l~v~~~------~gY~~~~~~~----------~~d~g~ 194 (316)
..+ ....+..+.+.+|++ +++|++ |+++|+ .||+++++.+ ++|.|+
T Consensus 336 ~~~------~~~~~~vG~~~~~~~~~i~d~~~~~~~~g~~Gei~v~~~~~~~~~~GY~~~~~~~~~~~~~~~~~TGD~~~ 409 (542)
T PRK06155 336 THG------SQRPGSMGRLAPGFEARVVDEHDQELPDGEPGELLLRADEPFAFATGYFGMPEKTVEAWRNLWFHTGDRVV 409 (542)
T ss_pred CCC------CCCCCCcCccCCCceEEEECCCCCCCCCCCceEEEEecCCccccchhhcCCHHHHHHhhcCCcEeccceEE
Confidence 211 112234445788998 887753 899985 7999887654 336666
Q ss_pred eec-Cc---CCcccceeEECCcccChHhHHHHHHHhccccceeEEEeeC-----CcEEEEEEecCC-chhhcchHHHHHH
Q psy14342 195 YQG-AE---RLALDETIMLRGMRYHPIDIENSVMRAHKKIAECAVFTWT-----NLLVVVVELDGN-ESEALDLVPLVTN 264 (316)
Q Consensus 195 ~~~-g~---~GR~dd~i~~~G~~v~p~eIE~~l~~~~p~v~~~~v~~~~-----~~~~~~v~~~~~-~~~~~~l~~~~~~ 264 (316)
+++ |. .||.||+|+++|++|+|.|||++|.+ ||+|.+|+|+++. +.+.+++.+... ..+..++.+++++
T Consensus 410 ~~~dG~l~i~GR~~d~i~~~G~~v~p~eIE~~l~~-~~~V~~~~v~~v~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~ 488 (542)
T PRK06155 410 RDADGWFRFVDRIKDAIRRRGENISSFEVEQVLLS-HPAVAAAAVFPVPSELGEDEVMAAVVLRDGTALEPVALVRHCEP 488 (542)
T ss_pred EcCCceEEEEecCCCEEEeCCEEECHHHHHHHHHh-CCCeeEEEEEeecccccCceEEEEEEECCCCCCCHHHHHHHHHh
Confidence 653 43 99999999999999999999999999 9999999999884 355666655443 2334567777877
Q ss_pred HHHHhcCeeecEEEEEcCCCcccCCCchhhHHHHHHHHHc
Q psy14342 265 AVLEEHHLIVGVAVVVDPGVVPINSRGEKQRMHLRDGFLA 304 (316)
Q Consensus 265 ~l~~~~~~~~~~~~~~~~~~lP~t~~gKi~r~~l~~~~~~ 304 (316)
.+. .++.| ..+.+++ ++|+|++||++|++|++.+..
T Consensus 489 ~l~-~~~~P-~~i~~~~--~iP~t~~GKi~r~~l~~~~~~ 524 (542)
T PRK06155 489 RLA-YFAVP-RYVEFVA--ALPKTENGKVQKFVLREQGVT 524 (542)
T ss_pred hCc-CccCC-cEEEEec--cCCCCcccceeHHHHHhhccC
Confidence 776 55555 3555554 899999999999999997654
|
|
| >PRK05677 long-chain-fatty-acid--CoA ligase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.6e-37 Score=292.09 Aligned_cols=291 Identities=15% Similarity=0.158 Sum_probs=214.1
Q ss_pred CeEEEEeccCCCCCceEEEEeHHHHHHHHHHHHHHhc--CCC-CCceEEecCCcCChhhhHHHHhhhhcCceeeeeCCcc
Q psy14342 1 MLAYLDFSVSTTGMLAGIKMSHAAVTSLCRSMKLACE--LYP-SRHIALCLDPYCGLGFALWVLSSVYSGHHSILIPPSE 77 (316)
Q Consensus 1 ~~a~i~~TSGTTG~PK~V~~t~~~l~~~~~~~~~~~~--~~~-~d~~l~~~p~~h~~g~~~~~~~~l~~G~~~v~~~~~~ 77 (316)
|+++|+|||||||.||+|.++|+++..........+. +.. .++++..+|++|.+++...++..+..|+++++....
T Consensus 208 d~a~i~~TSGTTG~PKgv~~s~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~pl~h~~~~~~~~~~~~~~g~~~~~~~~~- 286 (562)
T PRK05677 208 DVAVLQYTGGTTGVAKGAMLTHRNLVANMLQCRALMGSNLNEGCEILIAPLPLYHIYAFTFHCMAMMLIGNHNILISNP- 286 (562)
T ss_pred CEEEEEeCCCCCCCCcEEEEehhHHHHHHHHHHHHhccCCCCCccEEEEcCcHHHHHHHHHHHHHHHHcCCeEEEecCc-
Confidence 5799999999999999999999999877666555544 333 467788899999999877678888889887765432
Q ss_pred cccChHHHHHHHhccceeeEEecccchhhHHhhHHhhh---hhcccccccc-----------------cccccccchhcc
Q psy14342 78 VEVNPALWLSAVSQYRVRDTFCSYGMLAGIKMSHAAVT---SLCRSMKLAC-----------------ELYPSRHIALCL 137 (316)
Q Consensus 78 ~~~~~~~~~~~~~~~~~t~~~~~~~~~~~l~~~~~~~~---~~~~~~~ls~-----------------e~~~~yG~te~~ 137 (316)
.++..+++.+++++++.++.+|+.+..+........ ...+.+-.++ .+++.||+||++
T Consensus 287 --~~~~~~~~~i~~~~~t~~~~~p~~~~~l~~~~~~~~~~~~~lr~v~~gG~~~~~~~~~~~~~~~~~~v~~~YG~tE~~ 364 (562)
T PRK05677 287 --RDLPAMVKELGKWKFSGFVGLNTLFVALCNNEAFRKLDFSALKLTLSGGMALQLATAERWKEVTGCAICEGYGMTETS 364 (562)
T ss_pred --ccHHHHHHHHHHcCceEEecHHHHHHHHHhCcccccCChhhceEEEEcCccCCHHHHHHHHHHcCCCeeccCCccccC
Confidence 267889999999999999888888765543221100 0011111111 288899999986
Q ss_pred CCCCCCCceEEEEeeeccCcccccCCCce-EEecCc-----------eEEecC---CCcccCCCcCCC-----------C
Q psy14342 138 DPYCGLGFALWVLSSVYSGHHSILIPPSE-VEVNPA-----------LWLSAV---SQYRVRDTFCSC-----------N 191 (316)
Q Consensus 138 ~~~~~~~~~~~~~~~~~~g~~~~~~~g~~-~i~d~~-----------l~v~~~---~gY~~~~~~~~~-----------d 191 (316)
........ .....+..|.+++|.+ +++|++ |+++|+ .|||++++.+.. |
T Consensus 365 ~~~~~~~~-----~~~~~~~vG~~~~~~~v~i~d~~~~~~~~g~~Gel~v~g~~~~~gY~~~~~~t~~~~~~~g~~~TGD 439 (562)
T PRK05677 365 PVVSVNPS-----QAIQVGTIGIPVPSTLCKVIDDDGNELPLGEVGELCVKGPQVMKGYWQRPEATDEILDSDGWLKTGD 439 (562)
T ss_pred cceeecCc-----cCCCCCccCccCCCCEEEEECCCCCCCCCCCCeEEEEecCccchhhcCCchhhhhccCCCCcccccc
Confidence 43322211 1112334556899999 888753 999999 899998776532 5
Q ss_pred ceeeec-Cc---CCcccceeEECCcccChHhHHHHHHHhccccceeEEEeeC-----CcEEEEEEecCC-chhhcchHHH
Q psy14342 192 GALYQG-AE---RLALDETIMLRGMRYHPIDIENSVMRAHKKIAECAVFTWT-----NLLVVVVELDGN-ESEALDLVPL 261 (316)
Q Consensus 192 ~g~~~~-g~---~GR~dd~i~~~G~~v~p~eIE~~l~~~~p~v~~~~v~~~~-----~~~~~~v~~~~~-~~~~~~l~~~ 261 (316)
.|++++ |. .||.||+||++|++|+|.|||++|.+ ||.|.+++|++.. +.++++++..+. ..+.+++.+.
T Consensus 440 lg~~~~~G~l~i~GR~~d~i~~~G~~i~p~eiE~~l~~-~~~v~~~~v~g~~~~~~g~~~~~~v~~~~~~~~~~~~l~~~ 518 (562)
T PRK05677 440 IALIQEDGYMRIVDRKKDMILVSGFNVYPNELEDVLAA-LPGVLQCAAIGVPDEKSGEAIKVFVVVKPGETLTKEQVMEH 518 (562)
T ss_pred eEEECCCCcEEEEecCcCeEEeCCEEECHHHHHHHHHh-CCCccEEEEEeccCccCCceEEEEEEeCCCCCCCHHHHHHH
Confidence 555553 33 99999999999999999999999999 9999999999873 356666655433 3345678888
Q ss_pred HHHHHHHhcCeeecEEEEEcCCCcccCCCchhhHHHHHHHHHc
Q psy14342 262 VTNAVLEEHHLIVGVAVVVDPGVVPINSRGEKQRMHLRDGFLA 304 (316)
Q Consensus 262 ~~~~l~~~~~~~~~~~~~~~~~~lP~t~~gKi~r~~l~~~~~~ 304 (316)
+++.+. .+..| ..+.+++ ++|+|++||++|++|++.+..
T Consensus 519 ~~~~l~-~~~~P-~~i~~v~--~iP~t~sGKi~r~~L~~~~~~ 557 (562)
T PRK05677 519 MRANLT-GYKVP-KAVEFRD--ELPTTNVGKILRRELRDEELK 557 (562)
T ss_pred HHHhhh-hccCC-cEEEEec--cCCCCCcccccHHHHHHHHHH
Confidence 888887 55555 4566665 899999999999999987654
|
|
| >PRK07824 O-succinylbenzoic acid--CoA ligase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-36 Score=275.38 Aligned_cols=280 Identities=20% Similarity=0.157 Sum_probs=199.5
Q ss_pred CeEEEEeccCCCCCceEEEEeHHHHHHHHHHHHHHhcCCCCCceEEecCCcCChhhhHHHHhhhhcCceeeeeCCccccc
Q psy14342 1 MLAYLDFSVSTTGMLAGIKMSHAAVTSLCRSMKLACELYPSRHIALCLDPYCGLGFALWVLSSVYSGHHSILIPPSEVEV 80 (316)
Q Consensus 1 ~~a~i~~TSGTTG~PK~V~~t~~~l~~~~~~~~~~~~~~~~d~~l~~~p~~h~~g~~~~~~~~l~~G~~~v~~~~~~~~~ 80 (316)
|+++|+|||||||.||+|.++|+++..........+ ...++++.++|++|.+|+.. ++.++..|++++++.... ..
T Consensus 36 d~a~il~TSGTTG~PKgv~~s~~~l~~~~~~~~~~~--~~~~~~~~~~p~~~~~g~~~-~~~~l~~g~~~v~~~~~~-~~ 111 (358)
T PRK07824 36 DVALVVATSGTTGTPKGAMLTAAALTASADATHDRL--GGPGQWLLALPAHHIAGLQV-LVRSVIAGSEPVELDVSA-GF 111 (358)
T ss_pred CeEEEEeCCCCCCCCCEEEecHHHHHHHHHHHHhcc--CCCCeEEEECChHHHHHHHH-HHHHHHcCCeEEecCcCC-Cc
Confidence 689999999999999999999999988777655544 34567899999999999876 788999999988744222 22
Q ss_pred ChHHHHHHHhccce--eeEEecccchhhHHhhHHhhh--hhcccccccc----------------cccccccchhccCCC
Q psy14342 81 NPALWLSAVSQYRV--RDTFCSYGMLAGIKMSHAAVT--SLCRSMKLAC----------------ELYPSRHIALCLDPY 140 (316)
Q Consensus 81 ~~~~~~~~~~~~~~--t~~~~~~~~~~~l~~~~~~~~--~~~~~~~ls~----------------e~~~~yG~te~~~~~ 140 (316)
++..+++.+++++. +....+|..+..+........ ...+.+-.++ .+++.||+||++...
T Consensus 112 ~~~~~~~~i~~~~~~~~~~~~~p~~l~~~~~~~~~~~~~~~l~~i~~gG~~l~~~~~~~~~~~~~~v~~~YG~TE~~~~~ 191 (358)
T PRK07824 112 DPTALPRAVAELGGGRRYTSLVPMQLAKALDDPAATAALAELDAVLVGGGPAPAPVLDAAAAAGINVVRTYGMSETSGGC 191 (358)
T ss_pred CHHHHHHHHHHhCCCceEEEecHHHHHHHHhCccccCCcccceEEEECCCCCCHHHHHHHHhcCCcEEecccCCccCCCc
Confidence 68889999999984 333334444432222111000 0001111111 378899999985321
Q ss_pred CCCCceEEEEeeeccCcccccCCCce-EEecCceEEecC---CCcccCCCcCC---------CCceeeecCc---CCccc
Q psy14342 141 CGLGFALWVLSSVYSGHHSILIPPSE-VEVNPALWLSAV---SQYRVRDTFCS---------CNGALYQGAE---RLALD 204 (316)
Q Consensus 141 ~~~~~~~~~~~~~~~g~~~~~~~g~~-~i~d~~l~v~~~---~gY~~~~~~~~---------~d~g~~~~g~---~GR~d 204 (316)
...| .+++|++ ++.|++|+++|+ .|||+++.... +|.|++++|. .||.|
T Consensus 192 ------------~~~G---~~~~g~~v~i~~Gei~v~g~~~~~gY~~~~~~~~~~~~g~~~TGDl~~~~~g~l~i~GR~~ 256 (358)
T PRK07824 192 ------------VYDG---VPLDGVRVRVEDGRIALGGPTLAKGYRNPVDPDPFAEPGWFRTDDLGALDDGVLTVLGRAD 256 (358)
T ss_pred ------------CcCc---eeCCCCEEEecCCEEEEecCccccccCCCcccccccCCCceecccEEEEeCCEEEEEeccC
Confidence 1112 3689999 887777999999 89999765432 2556554443 99999
Q ss_pred ceeEECCcccChHhHHHHHHHhccccceeEEEeeC-----CcEEEEEEecCC-chhhcchHHHHHHHHHHhcCeeecEEE
Q psy14342 205 ETIMLRGMRYHPIDIENSVMRAHKKIAECAVFTWT-----NLLVVVVELDGN-ESEALDLVPLVTNAVLEEHHLIVGVAV 278 (316)
Q Consensus 205 d~i~~~G~~v~p~eIE~~l~~~~p~v~~~~v~~~~-----~~~~~~v~~~~~-~~~~~~l~~~~~~~l~~~~~~~~~~~~ 278 (316)
|+||++|++|+|.|||++|.+ ||.|.+|+|++.. +.+++++..... ....+++.+++++.+. .+..| ..+.
T Consensus 257 d~i~~~G~~v~p~eIE~~l~~-~~~V~~~~vv~~~~~~~g~~~~a~v~~~~~~~~~~~~i~~~~~~~l~-~~~~P-~~i~ 333 (358)
T PRK07824 257 DAISTGGLTVLPQVVEAALAT-HPAVADCAVFGLPDDRLGQRVVAAVVGDGGPAPTLEALRAHVARTLD-RTAAP-RELH 333 (358)
T ss_pred CeEEECCEEECHHHHHHHHHh-CCCcceEEEEecCCCCCceEEEEEEEeCCCCCcCHHHHHHHHHhhCc-cccCC-CEEE
Confidence 999999999999999999999 9999999999873 345555544432 2334567777777766 44444 4566
Q ss_pred EEcCCCcccCCCchhhHHHHHHHHHc
Q psy14342 279 VVDPGVVPINSRGEKQRMHLRDGFLA 304 (316)
Q Consensus 279 ~~~~~~lP~t~~gKi~r~~l~~~~~~ 304 (316)
+++ +||+|++||++|++|++.|.+
T Consensus 334 ~v~--~lP~t~~GKi~r~~L~~~~~~ 357 (358)
T PRK07824 334 VVD--ELPRRGIGKVDRRALVRRFAG 357 (358)
T ss_pred Eec--CCCCCCCccccHHHHHHHhhc
Confidence 665 899999999999999998864
|
|
| >PRK08180 feruloyl-CoA synthase; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.5e-37 Score=297.14 Aligned_cols=304 Identities=10% Similarity=0.018 Sum_probs=217.2
Q ss_pred CeEEEEeccCCCCCceEEEEeHHHHHHHHHHHHHHhcCC--CCCceEEecCCcCChhhhHHHHhhhhcCceeeeeCCccc
Q psy14342 1 MLAYLDFSVSTTGMLAGIKMSHAAVTSLCRSMKLACELY--PSRHIALCLDPYCGLGFALWVLSSVYSGHHSILIPPSEV 78 (316)
Q Consensus 1 ~~a~i~~TSGTTG~PK~V~~t~~~l~~~~~~~~~~~~~~--~~d~~l~~~p~~h~~g~~~~~~~~l~~G~~~v~~~~~~~ 78 (316)
|+++|+|||||||.||||++||+++..+.......++.. .+|++++++|++|.+|++..++.++..|+++++.+....
T Consensus 210 d~a~ilyTSGTTG~PKgV~~sh~~l~~~~~~~~~~~~~~~~~~~~~l~~lPl~h~~g~~~~~~~~l~~G~~v~~~~~~~~ 289 (614)
T PRK08180 210 TIAKFLFTSGSTGLPKAVINTHRMLCANQQMLAQTFPFLAEEPPVLVDWLPWNHTFGGNHNLGIVLYNGGTLYIDDGKPT 289 (614)
T ss_pred ceEEEEECCCCCCCCCEEEeehHHHHHHHHHHHhhccccCCCCcEEEEecchHHHhhHHHHHHHHHhcCCEEEEeCCCcc
Confidence 579999999999999999999999998888777777764 568999999999999988778899999999998653221
Q ss_pred ccChHHHHHHHhccceeeEEecccchhhHHhhHHhh----h---hhcccccccc-----------------------ccc
Q psy14342 79 EVNPALWLSAVSQYRVRDTFCSYGMLAGIKMSHAAV----T---SLCRSMKLAC-----------------------ELY 128 (316)
Q Consensus 79 ~~~~~~~~~~~~~~~~t~~~~~~~~~~~l~~~~~~~----~---~~~~~~~ls~-----------------------e~~ 128 (316)
..++..+++.++++++|+++.+|.++..+....... . ...+.+-.++ .++
T Consensus 290 ~~~~~~~l~~i~~~~~t~~~~vP~~~~~l~~~~~~~~~~~~~~~~~lr~v~~gGa~l~~~~~~~~~~~~~~~~g~~~~l~ 369 (614)
T PRK08180 290 PGGFDETLRNLREISPTVYFNVPKGWEMLVPALERDAALRRRFFSRLKLLFYAGAALSQDVWDRLDRVAEATCGERIRMM 369 (614)
T ss_pred chhHHHHHHHHHHhCCcEEechHHHHHHHHHHHHhchhhhhhhccceeEEEEccCCCCHHHHHHHHHHHHhhcCCCceee
Confidence 223456788999999999999998876554322110 0 0011111111 256
Q ss_pred ccccchhccCCCCCCCceEEEEeeeccCcccccCCCce-EEecCc----eEEecC---CCcccCCCcCC-----------
Q psy14342 129 PSRHIALCLDPYCGLGFALWVLSSVYSGHHSILIPPSE-VEVNPA----LWLSAV---SQYRVRDTFCS----------- 189 (316)
Q Consensus 129 ~~yG~te~~~~~~~~~~~~~~~~~~~~g~~~~~~~g~~-~i~d~~----l~v~~~---~gY~~~~~~~~----------- 189 (316)
+.||+||++.......+ .....+..|.++||++ +++|++ |+++|+ .|||++++.+.
T Consensus 370 ~~YG~TE~~~~~~~~~~-----~~~~~~svG~p~pg~~v~i~d~~~~GEi~vrg~~v~~GY~~~p~~t~~~~~~dgw~~T 444 (614)
T PRK08180 370 TGLGMTETAPSATFTTG-----PLSRAGNIGLPAPGCEVKLVPVGGKLEVRVKGPNVTPGYWRAPELTAEAFDEEGYYRS 444 (614)
T ss_pred eeecccccCCceEeccc-----ccCCCCcccCccCCcEEEEecCCCCcEEEEecCccchhhcCChhHhHhhcccCCceec
Confidence 78999998643321111 1112234556899999 888653 999999 89999876542
Q ss_pred CCceeee-----cCc---CCcccceeEE-CCcccC--hHhHHHHHHHhccccceeEEEeeCC-cEEEEEEecCCc-----
Q psy14342 190 CNGALYQ-----GAE---RLALDETIML-RGMRYH--PIDIENSVMRAHKKIAECAVFTWTN-LLVVVVELDGNE----- 252 (316)
Q Consensus 190 ~d~g~~~-----~g~---~GR~dd~i~~-~G~~v~--p~eIE~~l~~~~p~v~~~~v~~~~~-~~~~~v~~~~~~----- 252 (316)
+|.|+++ +|. +||.||+|++ +|++|+ |.|||.++.+ ||.|.+|+|++.++ .+.+++++.+..
T Consensus 445 GDlg~~~~~~d~~g~l~i~GR~~d~i~~~~G~~i~~~p~Eie~~l~~-~p~V~~a~V~g~~~~~~~a~V~~~~~~~~~~~ 523 (614)
T PRK08180 445 GDAVRFVDPADPERGLMFDGRIAEDFKLSSGTWVSVGPLRARAVSAG-APLVQDVVITGHDRDEIGLLVFPNLDACRRLA 523 (614)
T ss_pred cceEEecCCcCCCCceEEecchhhhEEcCCCcEecchhhhHHHHhhc-CchhheEEEEcCCCCceEEEEEcCHHHHHHHH
Confidence 2666662 233 9999998885 798766 8899999999 99999999999964 566666665431
Q ss_pred -----------hhhcchHHHHHHHHHHhcCe------eecEEEEEcCCCccc------CCCchhhHHHHHHHHHcCCCCc
Q psy14342 253 -----------SEALDLVPLVTNAVLEEHHL------IVGVAVVVDPGVVPI------NSRGEKQRMHLRDGFLADQLDP 309 (316)
Q Consensus 253 -----------~~~~~l~~~~~~~l~~~~~~------~~~~~~~~~~~~lP~------t~~gKi~r~~l~~~~~~~~~~~ 309 (316)
.+.+++.+++++.+...... .+..+.+++ .+|+ |++||++|+++.+.|++ +++.
T Consensus 524 ~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~~~~~~~~p~~~~~~~--~~p~~~~gk~t~~~~~~R~~~~~~y~~-~i~~ 600 (614)
T PRK08180 524 GLLADASLAEVLAHPAVRAAFRERLARLNAQATGSSTRVARALLLD--EPPSLDAGEITDKGYINQRAVLARRAA-LVEA 600 (614)
T ss_pred hhcccCCHHHHhcCHHHHHHHHHHHHHHHhhccccHhheeEEEEec--CCCCCccCccCccccccHHHHHHHhHH-HHHH
Confidence 13356788888877743310 234566665 5665 55678889999999998 8999
Q ss_pred chhh
Q psy14342 310 IYVA 313 (316)
Q Consensus 310 ~~~~ 313 (316)
+|..
T Consensus 601 lY~~ 604 (614)
T PRK08180 601 LYAD 604 (614)
T ss_pred HhCC
Confidence 9864
|
|
| >PRK09274 peptide synthase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=7e-37 Score=291.75 Aligned_cols=294 Identities=15% Similarity=0.096 Sum_probs=207.2
Q ss_pred CeEEEEeccCCCCCceEEEEeHHHHHHHHHHHHHHhcCCCCCceEEecCCcCChhhhHHHHhhhhcCceeeeeCCc---c
Q psy14342 1 MLAYLDFSVSTTGMLAGIKMSHAAVTSLCRSMKLACELYPSRHIALCLDPYCGLGFALWVLSSVYSGHHSILIPPS---E 77 (316)
Q Consensus 1 ~~a~i~~TSGTTG~PK~V~~t~~~l~~~~~~~~~~~~~~~~d~~l~~~p~~h~~g~~~~~~~~l~~G~~~v~~~~~---~ 77 (316)
++++|+|||||||.||+|.++|+++...+......+++.++|+.+.++|++|.++ +..|+++++.+.. .
T Consensus 175 ~~a~i~~TSGTTG~PK~v~~s~~~l~~~~~~~~~~~~~~~~~~~~~~~pl~~~~~--------~~~g~~~~~~~~~~~~~ 246 (552)
T PRK09274 175 DMAAILFTSGSTGTPKGVVYTHGMFEAQIEALREDYGIEPGEIDLPTFPLFALFG--------PALGMTSVIPDMDPTRP 246 (552)
T ss_pred CeEEEEECCCCCCCCceEEecHHHHHHHHHHHHHHhCCCCCceeeeccCHHHhhh--------hhhCCeEEecCcccccc
Confidence 5799999999999999999999999998888888899999999999999877543 2457777765321 1
Q ss_pred cccChHHHHHHHhccceeeEEecccchhhHHhhHHhhh---hhcccccccc-------------------cccccccchh
Q psy14342 78 VEVNPALWLSAVSQYRVRDTFCSYGMLAGIKMSHAAVT---SLCRSMKLAC-------------------ELYPSRHIAL 135 (316)
Q Consensus 78 ~~~~~~~~~~~~~~~~~t~~~~~~~~~~~l~~~~~~~~---~~~~~~~ls~-------------------e~~~~yG~te 135 (316)
...+|..+++.++++++++++.+|+++..+........ ...+.+-.++ .+++.||+||
T Consensus 247 ~~~~~~~~~~~i~~~~vt~~~~~P~~~~~l~~~~~~~~~~~~~lr~~~~gG~~~~~~~~~~~~~~~~~~~~~~~~YG~TE 326 (552)
T PRK09274 247 ATVDPAKLFAAIERYGVTNLFGSPALLERLGRYGEANGIKLPSLRRVISAGAPVPIAVIERFRAMLPPDAEILTPYGATE 326 (552)
T ss_pred cccCHHHHHHHHHHcCCeEEeccHHHHHHHHHHhhhcCCCCchhhEEEecCCcCCHHHHHHHHHHcCCCceEEccccccc
Confidence 12368899999999999999999998876654332110 0011111111 2677899999
Q ss_pred ccCCCCCCCce-EE----EEeeeccCcccccCCCce-EEecC--------------------ceEEecC---CCcccCCC
Q psy14342 136 CLDPYCGLGFA-LW----VLSSVYSGHHSILIPPSE-VEVNP--------------------ALWLSAV---SQYRVRDT 186 (316)
Q Consensus 136 ~~~~~~~~~~~-~~----~~~~~~~g~~~~~~~g~~-~i~d~--------------------~l~v~~~---~gY~~~~~ 186 (316)
++......... .. ........+.|.++||++ +++|+ +|+++|+ .|||++++
T Consensus 327 ~~~~~~~~~~~~~~~~~~~~~~~~~~~vG~~~~~~~~~ivd~~~~~~~~~~~~~~~~~g~~Gel~v~g~~~~~GY~~~~~ 406 (552)
T PRK09274 327 ALPISSIESREILFATRAATDNGAGICVGRPVDGVEVRIIAISDAPIPEWDDALRLATGEIGEIVVAGPMVTRSYYNRPE 406 (552)
T ss_pred cceeEeecchhhhccccccccCCCCcccCccCCCceEEEEeccccccccccccccCCCCCeeEEEEecCcccccccCChH
Confidence 86432211100 00 000000113455899999 88762 1999999 89999876
Q ss_pred cCCC---------------Cceeeec-Cc---CCcccceeEECCcccChHhHHHHHHHhccccceeEEEeeC----CcEE
Q psy14342 187 FCSC---------------NGALYQG-AE---RLALDETIMLRGMRYHPIDIENSVMRAHKKIAECAVFTWT----NLLV 243 (316)
Q Consensus 187 ~~~~---------------d~g~~~~-g~---~GR~dd~i~~~G~~v~p~eIE~~l~~~~p~v~~~~v~~~~----~~~~ 243 (316)
.+.. |.|++++ |. .||.||+||++|++|+|.|||++|.+ ||.|.+|+|++.. +.++
T Consensus 407 ~t~~~~~~~~~g~~w~~TGDlg~~d~dG~l~~~GR~~d~i~~~G~~v~p~eIE~~l~~-~p~V~~~~v~~~~~~~~~~~~ 485 (552)
T PRK09274 407 ATRLAKIPDGQGDVWHRMGDLGYLDAQGRLWFCGRKAHRVETAGGTLYTIPCERIFNT-HPGVKRSALVGVGVPGAQRPV 485 (552)
T ss_pred HhhhhhcccCCCCcEEEcCCEEEEccCCcEEEEeccCCeEEECCEEECcHHHHHHHHh-CcccceeEEEEeCCCCCceEE
Confidence 5432 4444433 32 99999999999999999999999999 9999999999884 3566
Q ss_pred EEEEecCCch-hhcchHHHHHHHHHHhcCeeecEEEEEcCCCcccC--CCchhhHHHHHHHHHc
Q psy14342 244 VVVELDGNES-EALDLVPLVTNAVLEEHHLIVGVAVVVDPGVVPIN--SRGEKQRMHLRDGFLA 304 (316)
Q Consensus 244 ~~v~~~~~~~-~~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~lP~t--~~gKi~r~~l~~~~~~ 304 (316)
+++++.+... +.+++.+++++.+.. +..+.....++..++||+| ++||++|++|++.+..
T Consensus 486 ~~v~~~~~~~~~~~~l~~~l~~~l~~-~~~~~~~~~~~~~~~lP~t~~~~GKi~r~~L~~~~~~ 548 (552)
T PRK09274 486 LCVELEPGVACSKSALYQELRALAAA-HPHTAGIERFLIHPSFPVDIRHNAKIFREKLAVWAAK 548 (552)
T ss_pred EEEEccCccccchHHHhhhhHHHHHh-cCCCcceeEEeccCCCCccccccccccHHHHHHHHHH
Confidence 7776665432 334577888887774 3333233444455589999 7999999999987765
|
|
| >TIGR03098 ligase_PEP_1 acyl-CoA ligase (AMP-forming), exosortase system type 1 associated | Back alignment and domain information |
|---|
Probab=100.00 E-value=7e-37 Score=289.19 Aligned_cols=286 Identities=17% Similarity=0.146 Sum_probs=214.1
Q ss_pred CeEEEEeccCCCCCceEEEEeHHHHHHHHHHHHHHhcCCCCCceEEecCCcCChhhhHHHHhhhhcCceeeeeCCccccc
Q psy14342 1 MLAYLDFSVSTTGMLAGIKMSHAAVTSLCRSMKLACELYPSRHIALCLDPYCGLGFALWVLSSVYSGHHSILIPPSEVEV 80 (316)
Q Consensus 1 ~~a~i~~TSGTTG~PK~V~~t~~~l~~~~~~~~~~~~~~~~d~~l~~~p~~h~~g~~~~~~~~l~~G~~~v~~~~~~~~~ 80 (316)
++++|+|||||||.||+|.+||.++...+......+++.++|+++.++|++|.+|+.. ++.++..|+++++.++.
T Consensus 162 ~~~~i~~TSGTTG~PK~v~~t~~~l~~~~~~~~~~~~~~~~d~~l~~~p~~~~~~~~~-~~~~l~~G~~~~~~~~~---- 236 (515)
T TIGR03098 162 DMAAILYTSGSTGRPKGVVLSHRNLVAGAQSVATYLENRPDDRLLAVLPLSFDYGFNQ-LTTAFYVGATVVLHDYL---- 236 (515)
T ss_pred CeEEEEECCCCCCCCceEEEecHHHHHHHHHHHHHhCCCcccEEEEECchhhHhHHHH-HHHHHHcCCEEEEcCCC----
Confidence 4789999999999999999999999988888888888999999999999999999876 88999999999987542
Q ss_pred ChHHHHHHHhccceeeEEecccchhhHHhhHHhh--hhhcccccccc------------------cccccccchhccCCC
Q psy14342 81 NPALWLSAVSQYRVRDTFCSYGMLAGIKMSHAAV--TSLCRSMKLAC------------------ELYPSRHIALCLDPY 140 (316)
Q Consensus 81 ~~~~~~~~~~~~~~t~~~~~~~~~~~l~~~~~~~--~~~~~~~~ls~------------------e~~~~yG~te~~~~~ 140 (316)
++..+++.++++++|+++.+|+++..+....... ....+.+-.++ .+++.||+||++...
T Consensus 237 ~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~l~~~~~~g~~l~~~~~~~~~~~~~~~~~~~~YG~tE~~~~~ 316 (515)
T TIGR03098 237 LPRDVLKALEKHGITGLAAVPPLWAQLAQLDWPESAAPSLRYLTNSGGAMPRATLSRLRSFLPNARLFLMYGLTEAFRST 316 (515)
T ss_pred CHHHHHHHHHHcCCceEecChHHHHHHHhcccCCCCccceEEEEecCCcCCHHHHHHHHHHCCCCeEeeeeccccccceE
Confidence 6889999999999999999999887654321110 00011111111 278899999986322
Q ss_pred CCCCceEEEEeeeccCcccccCCCce-EEecCc-----------eEEecC---CCcccCCCcC-----------------
Q psy14342 141 CGLGFALWVLSSVYSGHHSILIPPSE-VEVNPA-----------LWLSAV---SQYRVRDTFC----------------- 188 (316)
Q Consensus 141 ~~~~~~~~~~~~~~~g~~~~~~~g~~-~i~d~~-----------l~v~~~---~gY~~~~~~~----------------- 188 (316)
...... .....++.|.+++|++ +++|++ |+++|+ .|||+++..+
T Consensus 317 ~~~~~~----~~~~~~~vG~~~~~~~~~i~~~~~~~~~~~~~Gel~v~g~~~~~gy~~~~~~~~~~~~~~~~~~~~~~~~ 392 (515)
T TIGR03098 317 YLPPEE----VDRRPDSIGKAIPNAEVLVLREDGSECAPGEEGELVHRGALVAMGYWNDPEKTAERFRPLPPRPGELHLP 392 (515)
T ss_pred eccccc----ccCCCCCcceecCCCEEEEECCCCCCCCCCCceEEEEcCchhhccccCCchhhhhhhhccCCcccccccc
Confidence 111100 0112335556899999 777543 899999 8999976543
Q ss_pred -----CCCceeeec-Cc---CCcccceeEECCcccChHhHHHHHHHhccccceeEEEee-----CCcEEEEEEecC-Cch
Q psy14342 189 -----SCNGALYQG-AE---RLALDETIMLRGMRYHPIDIENSVMRAHKKIAECAVFTW-----TNLLVVVVELDG-NES 253 (316)
Q Consensus 189 -----~~d~g~~~~-g~---~GR~dd~i~~~G~~v~p~eIE~~l~~~~p~v~~~~v~~~-----~~~~~~~v~~~~-~~~ 253 (316)
++|.|++++ |. .||.||+|+.+|++|+|.|||++|.+ ||.|.+|+|++. +++++++++... ...
T Consensus 393 ~~~~~TGD~~~~~~~g~l~~~GR~~d~i~~~G~~v~~~eiE~~l~~-~~~v~~~~v~~~~~~~~g~~~~~~~~~~~~~~~ 471 (515)
T TIGR03098 393 ELAVWSGDTVRRDEEGFLYFVGRRDEMIKTSGYRVSPTEVEEVAYA-TGLVAEAVAFGVPDPTLGQAIVLVVTPPGGEEL 471 (515)
T ss_pred ccceeccceEEEcCCceEEEEeccccceecCCEEeCHHHHHHHHhc-CCCeeEEEEEeccCcccCceEEEEEEeCCCCCC
Confidence 235666643 33 99999999999999999999999999 999999999986 346666665433 223
Q ss_pred hhcchHHHHHHHHHHhcCeeecEEEEEcCCCcccCCCchhhHHHHHH
Q psy14342 254 EALDLVPLVTNAVLEEHHLIVGVAVVVDPGVVPINSRGEKQRMHLRD 300 (316)
Q Consensus 254 ~~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~lP~t~~gKi~r~~l~~ 300 (316)
+.+++.+.+++.+. .+..| ..+.+++ ++|+|++||++|++|++
T Consensus 472 ~~~~l~~~l~~~l~-~~~~p-~~i~~v~--~iP~t~~GK~~r~~L~~ 514 (515)
T TIGR03098 472 DRAALLAECRARLP-NYMVP-ALIHVRQ--ALPRNANGKIDRKALAA 514 (515)
T ss_pred CHHHHHHHHHhhCc-cccCC-CEEEEec--cCCCCCCCCCcHHHhcc
Confidence 44677788877777 44444 4556655 89999999999999875
|
This group of proteins contains an AMP-binding domain (pfam00501) associated with acyl CoA-ligases. These proteins are generally found in genomes containing the exosortase/PEP-CTERM protein expoert system, specifically the type 1 variant of this system described by the Genome Property GenProp0652. When found in this context they are invariably present next to a decarboxylase enzyme. A number of sequences from Burkholderia species also hit this model, but the genomic context is obviously different. The hypothesis of a constant substrate for this family is only strong where the exosortase context is present. |
| >PRK07787 acyl-CoA synthetase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-36 Score=283.93 Aligned_cols=284 Identities=18% Similarity=0.137 Sum_probs=212.6
Q ss_pred CeEEEEeccCCCCCceEEEEeHHHHHHHHHHHHHHhcCCCCCceEEecCCcCChhhhHHHHhhhhcCceeeeeCCccccc
Q psy14342 1 MLAYLDFSVSTTGMLAGIKMSHAAVTSLCRSMKLACELYPSRHIALCLDPYCGLGFALWVLSSVYSGHHSILIPPSEVEV 80 (316)
Q Consensus 1 ~~a~i~~TSGTTG~PK~V~~t~~~l~~~~~~~~~~~~~~~~d~~l~~~p~~h~~g~~~~~~~~l~~G~~~v~~~~~~~~~ 80 (316)
|+++|+|||||||.||+|.++|+++...+..+...+++.++|+++..+|++|..|++..++.++..|+++++.+..
T Consensus 129 ~~a~i~~TSGTTG~PK~v~~t~~~l~~~~~~~~~~~~~~~~~~~~~~~p~~~~~g~~~~~~~~l~~G~~~~~~~~~---- 204 (471)
T PRK07787 129 APALIVYTSGTTGPPKGVVLSRRAIAADLDALAEAWQWTADDVLVHGLPLFHVHGLVLGVLGPLRIGNRFVHTGRP---- 204 (471)
T ss_pred ceEEEEECCCCCCCCCEEEEeHHHHHHHHHHHHHhcCCCccceeEeccCCeeechhHHHHHHHHhcCCEEEecCCC----
Confidence 5799999999999999999999999998888888889999999999999999999998899999999999886532
Q ss_pred ChHHHHHHHhccceeeEEecccchhhHHhhHHhhhh--hcccccccc-----------------cccccccchhccCCCC
Q psy14342 81 NPALWLSAVSQYRVRDTFCSYGMLAGIKMSHAAVTS--LCRSMKLAC-----------------ELYPSRHIALCLDPYC 141 (316)
Q Consensus 81 ~~~~~~~~~~~~~~t~~~~~~~~~~~l~~~~~~~~~--~~~~~~ls~-----------------e~~~~yG~te~~~~~~ 141 (316)
++..+++.++ ++++++..+|..+..+......... ..+.+-..+ .+++.||+||++....
T Consensus 205 ~~~~~~~~i~-~~~t~~~~~P~~~~~l~~~~~~~~~l~~l~~~~~gg~~~~~~~~~~~~~~~~~~~~~~YG~tE~~~~~~ 283 (471)
T PRK07787 205 TPEAYAQALS-EGGTLYFGVPTVWSRIAADPEAARALRGARLLVSGSAALPVPVFDRLAALTGHRPVERYGMTETLITLS 283 (471)
T ss_pred CHHHHHHHHh-hCceEEEcchHHHHHHHhCccccccccceeEEEECCCCCCHHHHHHHHHHcCCCeecccCccccCccee
Confidence 6889999999 9999999999887655432211000 001111111 2888999999864322
Q ss_pred CCCceEEEEeeeccCcccccCCCce-EEecC-------------ceEEecC---CCcccCCCcCCC-----------Cce
Q psy14342 142 GLGFALWVLSSVYSGHHSILIPPSE-VEVNP-------------ALWLSAV---SQYRVRDTFCSC-----------NGA 193 (316)
Q Consensus 142 ~~~~~~~~~~~~~~g~~~~~~~g~~-~i~d~-------------~l~v~~~---~gY~~~~~~~~~-----------d~g 193 (316)
.... .....+..+.+++|.+ +++|+ +|+++|+ .|||++++.+.. |.|
T Consensus 284 ~~~~-----~~~~~~~vG~~~~g~~~~i~d~~~~~~~~~~~~~Gei~v~g~~~~~gy~~~~~~t~~~~~~~~~~~TGDlg 358 (471)
T PRK07787 284 TRAD-----GERRPGWVGLPLAGVETRLVDEDGGPVPHDGETVGELQVRGPTLFDGYLNRPDATAAAFTADGWFRTGDVA 358 (471)
T ss_pred cCCC-----CcccCCcccccCCCcEEEEECCCCCCCCCCCCCceEEEEECcccchhhcCChhhchhcccCCCceecCceE
Confidence 1110 0111223445788888 77753 2899998 899998766532 556
Q ss_pred eeec-Cc---CCcc-cceeEECCcccChHhHHHHHHHhccccceeEEEeeC-----CcEEEEEEecCCchhhcchHHHHH
Q psy14342 194 LYQG-AE---RLAL-DETIMLRGMRYHPIDIENSVMRAHKKIAECAVFTWT-----NLLVVVVELDGNESEALDLVPLVT 263 (316)
Q Consensus 194 ~~~~-g~---~GR~-dd~i~~~G~~v~p~eIE~~l~~~~p~v~~~~v~~~~-----~~~~~~v~~~~~~~~~~~l~~~~~ 263 (316)
++++ |. .||. ||+++.+|++|+|.|||++|.. +|.|.+++|++.. +.+++++.... ..+.+++.+.++
T Consensus 359 ~~~~dg~l~~~GR~~d~~i~~~G~~v~~~eIE~~l~~-~~~v~~~~v~~~~~~~~~~~~~a~v~~~~-~~~~~~l~~~l~ 436 (471)
T PRK07787 359 VVDPDGMHRIVGRESTDLIKSGGYRIGAGEIETALLG-HPGVREAAVVGVPDDDLGQRIVAYVVGAD-DVAADELIDFVA 436 (471)
T ss_pred EEcCCCCEEEeCCCCceeEeeCCEEECHHHHHHHHHh-CCCcceEEEEcccccccCeEEEEEEEeCC-CCCHHHHHHHHH
Confidence 6643 43 8996 8999999999999999999999 9999999999883 45666666532 234456777777
Q ss_pred HHHHHhcCeeecEEEEEcCCCcccCCCchhhHHHHHH
Q psy14342 264 NAVLEEHHLIVGVAVVVDPGVVPINSRGEKQRMHLRD 300 (316)
Q Consensus 264 ~~l~~~~~~~~~~~~~~~~~~lP~t~~gKi~r~~l~~ 300 (316)
+.+. .+..| ..+.+++ ++|+|++||++|++|++
T Consensus 437 ~~l~-~~~~P-~~i~~~~--~iP~~~~GKi~r~~L~~ 469 (471)
T PRK07787 437 QQLS-VHKRP-REVRFVD--ALPRNAMGKVLKKQLLS 469 (471)
T ss_pred hhcc-cccCC-cEEEEec--cCCCCCCccccHHHhcc
Confidence 7777 44444 3555555 89999999999999875
|
|
| >PRK05691 peptide synthase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.3e-37 Score=340.97 Aligned_cols=305 Identities=21% Similarity=0.287 Sum_probs=223.5
Q ss_pred CeEEEEeccCCCCCceEEEEeHHHHHHHHHHHHHHhcC--CCCCceEEecCCcCChhhhHHHHhhhhcCceeeeeCCccc
Q psy14342 1 MLAYLDFSVSTTGMLAGIKMSHAAVTSLCRSMKLACEL--YPSRHIALCLDPYCGLGFALWVLSSVYSGHHSILIPPSEV 78 (316)
Q Consensus 1 ~~a~i~~TSGTTG~PK~V~~t~~~l~~~~~~~~~~~~~--~~~d~~l~~~p~~h~~g~~~~~~~~l~~G~~~v~~~~~~~ 78 (316)
|+|||+|||||||.||||++||+|+..++..+...+++ +++|+++.++|++|++|++..++.+++.|+++++.++..+
T Consensus 167 d~a~i~yTSGTTG~PKGV~lsH~~l~~~~~~~~~~~~~~~~~~d~~l~~lp~~h~~g~~~~~~~~l~~G~~~v~~~~~~~ 246 (4334)
T PRK05691 167 DIAFLQYTSGSTALPKGVQVSHGNLVANEQLIRHGFGIDLNPDDVIVSWLPLYHDMGLIGGLLQPIFSGVPCVLMSPAYF 246 (4334)
T ss_pred CeEEEEeCCCCCCCCcEEEEEhHHHHHHHHHHHHHhCCCCCCCceEEEeccchhhhHHHHHHHHHHHCCCEEEEeCcHHH
Confidence 68999999999999999999999999988888777777 8899999999999999998889999999999999998877
Q ss_pred ccChHHHHHHHhccceeeEEecccchhhHHhhHHhhhhhcccccccc-------------------------------cc
Q psy14342 79 EVNPALWLSAVSQYRVRDTFCSYGMLAGIKMSHAAVTSLCRSMKLAC-------------------------------EL 127 (316)
Q Consensus 79 ~~~~~~~~~~~~~~~~t~~~~~~~~~~~l~~~~~~~~~~~~~~~ls~-------------------------------e~ 127 (316)
..+|..|++.++++++++.. .|++...+...... ......+++++ .+
T Consensus 247 ~~~p~~~~~~i~~~~~t~~~-~~~~~~~l~~~~~~-~~~~~~~~l~~lr~~~~gge~l~~~~~~~~~~~~~~~g~~~~~~ 324 (4334)
T PRK05691 247 LERPLRWLEAISEYGGTISG-GPDFAYRLCSERVS-ESALERLDLSRWRVAYSGSEPIRQDSLERFAEKFAACGFDPDSF 324 (4334)
T ss_pred hhCHHHHHHHHHHcCCEEec-CCchHHHHHHHhcC-HHHhcccccccceEEEECcccCCHHHHHHHHHHhhhcCCCcccc
Confidence 88999999999999999554 44443332221100 00011111111 16
Q ss_pred cccccchhccCCCCCCCc-----eEEEE-------e-----eeccCcccccCCCce-EEecCc------------eEEec
Q psy14342 128 YPSRHIALCLDPYCGLGF-----ALWVL-------S-----SVYSGHHSILIPPSE-VEVNPA------------LWLSA 177 (316)
Q Consensus 128 ~~~yG~te~~~~~~~~~~-----~~~~~-------~-----~~~~g~~~~~~~g~~-~i~d~~------------l~v~~ 177 (316)
++.||+||++...+.... ..... . ....++.|.++||++ +++|++ ||++|
T Consensus 325 ~~~YG~TE~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~p~~~v~Ivd~~~~~~~~~g~~GEl~v~G 404 (4334)
T PRK05691 325 FASYGLAEATLFVSGGRRGQGIPALELDAEALARNRAEPGTGSVLMSCGRSQPGHAVLIVDPQSLEVLGDNRVGEIWASG 404 (4334)
T ss_pred ccCcchhhheeeeecccCCCCCceEeecHhHHhcCCccCCCCCceeccCCccCCCEEEEEcCCCCcCCCCCCeEEEEecC
Confidence 679999998754332211 00000 0 000123455899999 999863 99999
Q ss_pred C---CCcccCCCcCCC--------------CceeeecCc---CCcccceeEECCcccChHhHHHHHHHhccccc---eeE
Q psy14342 178 V---SQYRVRDTFCSC--------------NGALYQGAE---RLALDETIMLRGMRYHPIDIENSVMRAHKKIA---ECA 234 (316)
Q Consensus 178 ~---~gY~~~~~~~~~--------------d~g~~~~g~---~GR~dd~i~~~G~~v~p~eIE~~l~~~~p~v~---~~~ 234 (316)
| .|||++++.|.. |.|++++|. +||.||+||++|++|+|.|||++|.+ ++.+. .++
T Consensus 405 p~v~~GY~~~~~~T~~~f~~~~g~~w~rTGDlg~~~dG~l~i~GR~kd~iki~G~~v~p~eIE~~l~~-~~~v~~~~~~~ 483 (4334)
T PRK05691 405 PSIAHGYWRNPEASAKTFVEHDGRTWLRTGDLGFLRDGELFVTGRLKDMLIVRGHNLYPQDIEKTVER-EVEVVRKGRVA 483 (4334)
T ss_pred CccchhhcCChhhhHHHhhcCCCCceeecCCeEEEECCEEEEEeeecCEEEECCEecChHHHHHHHHh-cchhhcCCcEE
Confidence 9 999999887643 555555554 99999999999999999999999999 77664 244
Q ss_pred EEeeC---C-cEEEEEEecCC---chhhcchHHHHHHHHHHhcCeeecEEEEEcCCCcccCCCchhhHHHHHHHHHcCCC
Q psy14342 235 VFTWT---N-LLVVVVELDGN---ESEALDLVPLVTNAVLEEHHLIVGVAVVVDPGVVPINSRGEKQRMHLRDGFLADQL 307 (316)
Q Consensus 235 v~~~~---~-~~~~~v~~~~~---~~~~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~lP~t~~gKi~r~~l~~~~~~~~~ 307 (316)
++... + ...+..++... ....+++.+.+++.+.+.....+..+.+++...||+|++||++|++|++.|.++..
T Consensus 484 ~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~~p~~~~~v~~~~lP~t~~GKi~R~~l~~~~~~~~~ 563 (4334)
T PRK05691 484 AFAVNHQGEEGIGIAAEISRSVQKILPPQALIKSIRQAVAEACQEAPSVVLLLNPGALPKTSSGKLQRSACRLRLADGSL 563 (4334)
T ss_pred EEEeccCCCceEEEEEEechhhcccCCHHHHHHHHHHHHHHHcCCCceEEEEECCCCCCCCCCccccHHHHHHHHHhccc
Confidence 44442 1 22333333221 12335788899999997766656678888878999999999999999999988765
Q ss_pred C
Q psy14342 308 D 308 (316)
Q Consensus 308 ~ 308 (316)
+
T Consensus 564 ~ 564 (4334)
T PRK05691 564 D 564 (4334)
T ss_pred c
Confidence 4
|
|
| >TIGR02275 DHB_AMP_lig 2,3-dihydroxybenzoate-AMP ligase | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.6e-37 Score=290.37 Aligned_cols=286 Identities=15% Similarity=0.134 Sum_probs=208.9
Q ss_pred CeEEEEeccCCCCCceEEEEeHHHHHHHHHHHHHHhcCCCCCceEEecCCcCChhhhH-HHHhhhhcCceeeeeCCcccc
Q psy14342 1 MLAYLDFSVSTTGMLAGIKMSHAAVTSLCRSMKLACELYPSRHIALCLDPYCGLGFAL-WVLSSVYSGHHSILIPPSEVE 79 (316)
Q Consensus 1 ~~a~i~~TSGTTG~PK~V~~t~~~l~~~~~~~~~~~~~~~~d~~l~~~p~~h~~g~~~-~~~~~l~~G~~~v~~~~~~~~ 79 (316)
|+++|+|||||||.||+|.+||.++..++......+.+.++|+++.++|++|.+++.. .++.++..|+++++.++.
T Consensus 184 ~~a~i~~TSGTTG~PKgv~~s~~~~~~~~~~~~~~~~~~~~d~~l~~~P~~h~~~~~~~~~~~~l~~G~~~v~~~~~--- 260 (527)
T TIGR02275 184 EVAFFQLSGGSTGTPKLIPRTHNDYYYSVRRSVEICWLTQQTRYLCALPAAHNYPLSSPGALGVFYAGGCVVLAPDP--- 260 (527)
T ss_pred ccEEEEeCCCCCCCCceeeeehHHHHHHHHHHHhhcCCCcCCEEEECCChHhhhhhhHHHHHHHHhcCCeEEECCCC---
Confidence 5799999999999999999999999988888788888999999999999999999875 378899999999886532
Q ss_pred cChHHHHHHHhccceeeEEecccchhhHHhhHHhhhh---hcccccccc-----------------cccccccchhccCC
Q psy14342 80 VNPALWLSAVSQYRVRDTFCSYGMLAGIKMSHAAVTS---LCRSMKLAC-----------------ELYPSRHIALCLDP 139 (316)
Q Consensus 80 ~~~~~~~~~~~~~~~t~~~~~~~~~~~l~~~~~~~~~---~~~~~~ls~-----------------e~~~~yG~te~~~~ 139 (316)
+|..+++.+++++++++..+|+++..+......... ..+.+-..+ .+++.||+||.+..
T Consensus 261 -~~~~~~~~i~~~~~t~~~~~p~~~~~l~~~~~~~~~~~~~lr~~~~gG~~l~~~~~~~~~~~~g~~~~~~YG~tE~~~~ 339 (527)
T TIGR02275 261 -SPTDCFPLIERHKVTVTALVPPAVALWMQAASKSRYDLSSLKLLQVGGAKFSEAAARRVPAVFGCQLQQVFGMAEGLVN 339 (527)
T ss_pred -CHHHHHHHHHHhCCeEEEecHHHHHHHHhCccccCCCccceEEEEEcCCCCCHHHHHHHHHHhCCeEEeeeccCccCcc
Confidence 578899999999999999999887655433221100 011111111 28889999996532
Q ss_pred CCCCCceEEEEeeeccCcccccCC-Cce-EEecCc-----------eEEecC---CCcccCCCcCCC-----------Cc
Q psy14342 140 YCGLGFALWVLSSVYSGHHSILIP-PSE-VEVNPA-----------LWLSAV---SQYRVRDTFCSC-----------NG 192 (316)
Q Consensus 140 ~~~~~~~~~~~~~~~~g~~~~~~~-g~~-~i~d~~-----------l~v~~~---~gY~~~~~~~~~-----------d~ 192 (316)
+...... .....++.|.+++ +.. +++|++ |+++|+ .|||++++.+.. |.
T Consensus 340 ~~~~~~~----~~~~~~~~G~~~~~~~~v~i~d~~g~~~~~g~~Gei~v~g~~~~~gY~~~~~~~~~~~~~dg~~~TGDl 415 (527)
T TIGR02275 340 YTRLDDP----AEIIFTTQGRPMSPDDEVRVVDDHGNPVAPGETGMLLTRGPYTFRGYYKAPEHNAAAFDAEGFYYTGDL 415 (527)
T ss_pred ccCCCCc----cccccccCCCCCCCCceEEEECCCCCCCCCCCceEEEecCCccchhhcCChhHhHhhcCcCCCEEcCce
Confidence 2211100 0111223444664 566 666643 999999 899998765522 55
Q ss_pred eeeec-Cc---CCcccceeEECCcccChHhHHHHHHHhccccceeEEEeeC-----CcEEEEEEecCCchhhcchHHHHH
Q psy14342 193 ALYQG-AE---RLALDETIMLRGMRYHPIDIENSVMRAHKKIAECAVFTWT-----NLLVVVVELDGNESEALDLVPLVT 263 (316)
Q Consensus 193 g~~~~-g~---~GR~dd~i~~~G~~v~p~eIE~~l~~~~p~v~~~~v~~~~-----~~~~~~v~~~~~~~~~~~l~~~~~ 263 (316)
|++++ |. .||.||+|+++|++|+|.|||++|.+ ||.|.+++|++.. +.+++++++.....+..++.+.++
T Consensus 416 ~~~~~~g~l~~~gR~~d~i~~~G~~v~~~eiE~~l~~-~~~v~~~~v~~~~~~~~~~~~~a~vv~~~~~~~~~~l~~~l~ 494 (527)
T TIGR02275 416 VRLTPEGYIVVVGRAKDQINRGGEKIAAEEIENLLLA-HPAVHDAALVSMPDELLGEKSCAFIVVRDPALKAAQLRRFLR 494 (527)
T ss_pred EEEcCCccEEEEecccceeecCCEEECHHHHHHHHHh-CCCceEEEEEecCCcccccEEEEEEEECCCCCCHHHHHHHHH
Confidence 65543 43 99999999999999999999999999 9999999999984 356677666554334456666666
Q ss_pred HH-HHHhcCeeecEEEEEcCCCcccCCCchhhHHHHH
Q psy14342 264 NA-VLEEHHLIVGVAVVVDPGVVPINSRGEKQRMHLR 299 (316)
Q Consensus 264 ~~-l~~~~~~~~~~~~~~~~~~lP~t~~gKi~r~~l~ 299 (316)
+. +. .+..| ..+.+++ ++|+|++||++|++|+
T Consensus 495 ~~~l~-~~~~P-~~i~~v~--~iP~t~sGKv~r~~L~ 527 (527)
T TIGR02275 495 ERGLA-EYKLP-DRVEFID--SLPLTAVGKIDKKALR 527 (527)
T ss_pred hCCCc-cccCC-CEEEEec--cCCCCCccceeHHhcC
Confidence 54 43 44444 4566665 8999999999999874
|
Proteins in this family belong to the AMP-binding enzyme family (pfam00501). Members activate 2,3-dihydroxybenzoate (DHB) by ligation of AMP from ATP with the release of pyrophosphate; many are involved in synthesis of siderophores such as enterobactin, vibriobactin, vulnibactin, etc. The most closely related proteine believed to differ in function activates salicylate rather than DHB. |
| >PRK03640 O-succinylbenzoic acid--CoA ligase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1e-36 Score=285.87 Aligned_cols=290 Identities=16% Similarity=0.110 Sum_probs=218.3
Q ss_pred CeEEEEeccCCCCCceEEEEeHHHHHHHHHHHHHHhcCCCCCceEEecCCcCChhhhHHHHhhhhcCceeeeeCCccccc
Q psy14342 1 MLAYLDFSVSTTGMLAGIKMSHAAVTSLCRSMKLACELYPSRHIALCLDPYCGLGFALWVLSSVYSGHHSILIPPSEVEV 80 (316)
Q Consensus 1 ~~a~i~~TSGTTG~PK~V~~t~~~l~~~~~~~~~~~~~~~~d~~l~~~p~~h~~g~~~~~~~~l~~G~~~v~~~~~~~~~ 80 (316)
++++++|||||||.||+|.+||+++...+......+++.++|+++.++|++|.+++.. ++.++..|+++++.+..
T Consensus 142 ~~a~i~~TSGtTG~PK~v~~s~~~~~~~~~~~~~~~~~~~~d~~l~~~p~~~~~g~~~-~~~~l~~G~~~~~~~~~---- 216 (483)
T PRK03640 142 EVATIMYTSGTTGKPKGVIQTYGNHWWSAVGSALNLGLTEDDCWLAAVPIFHISGLSI-LMRSVIYGMRVVLVEKF---- 216 (483)
T ss_pred CeEEEEeCCCcCCCCcEEEEecHHHHHHHHHHHHhcCCCcCcEEEEecCHHHHHHHHH-HHHHHhcCCEEEecCCC----
Confidence 5789999999999999999999999888777777789999999999999999999876 78999999999987642
Q ss_pred ChHHHHHHHhccceeeEEecccchhhHHhhHH--hhhhhcccccccc----------------cccccccchhccCCCCC
Q psy14342 81 NPALWLSAVSQYRVRDTFCSYGMLAGIKMSHA--AVTSLCRSMKLAC----------------ELYPSRHIALCLDPYCG 142 (316)
Q Consensus 81 ~~~~~~~~~~~~~~t~~~~~~~~~~~l~~~~~--~~~~~~~~~~ls~----------------e~~~~yG~te~~~~~~~ 142 (316)
++..+++.+++++++++..+|+++..+..... ......+.+-.++ .+++.||+||++.....
T Consensus 217 ~~~~~~~~i~~~~~t~l~~~P~~~~~l~~~~~~~~~~~~lr~~~~~g~~~~~~~~~~~~~~~~~~~~~YG~tE~~~~~~~ 296 (483)
T PRK03640 217 DAEKINKLLQTGGVTIISVVSTMLQRLLERLGEGTYPSSFRCMLLGGGPAPKPLLEQCKEKGIPVYQSYGMTETASQIVT 296 (483)
T ss_pred CHHHHHHHHHHhCCcEEEeHHHHHHHHHhCcCccccCCcceEEEEcCCCCCHHHHHHHHHhCCCeeeeeccCcccccccc
Confidence 68899999999999999999998876543221 1111111111111 28889999998654332
Q ss_pred CCceEEEEeeeccCcccccCCCce-EEecC----------ceEEecC---CCcccCCCcC----------CCCceeeec-
Q psy14342 143 LGFALWVLSSVYSGHHSILIPPSE-VEVNP----------ALWLSAV---SQYRVRDTFC----------SCNGALYQG- 197 (316)
Q Consensus 143 ~~~~~~~~~~~~~g~~~~~~~g~~-~i~d~----------~l~v~~~---~gY~~~~~~~----------~~d~g~~~~- 197 (316)
..+.. .....++.|.+++|++ ++.|+ +|+++|+ .|||++++.+ ++|.+++++
T Consensus 297 ~~~~~---~~~~~~~vG~p~~~~~~~i~~~~~~~~~g~~Gel~v~g~~~~~gy~~~~~~~~~~~~~~~~~tGDl~~~~~~ 373 (483)
T PRK03640 297 LSPED---ALTKLGSAGKPLFPCELKIEKDGVVVPPFEEGEIVVKGPNVTKGYLNREDATRETFQDGWFKTGDIGYLDEE 373 (483)
T ss_pred cCccc---ccccCCCcccccCCcEEEEecCCCcCCCCCceEEEEECcchhhhhcCCHHHHHHHHhcCCeeccceEEEcCC
Confidence 22210 1112344556899999 77764 3999999 8999987654 236666644
Q ss_pred Cc---CCcccceeEECCcccChHhHHHHHHHhccccceeEEEeeCC-----cEEEEEEecCCchhhcchHHHHHHHHHHh
Q psy14342 198 AE---RLALDETIMLRGMRYHPIDIENSVMRAHKKIAECAVFTWTN-----LLVVVVELDGNESEALDLVPLVTNAVLEE 269 (316)
Q Consensus 198 g~---~GR~dd~i~~~G~~v~p~eIE~~l~~~~p~v~~~~v~~~~~-----~~~~~v~~~~~~~~~~~l~~~~~~~l~~~ 269 (316)
|. .||.||++|.+|.+|+|.|||++|.+ +|.|.++++++..+ .+++++... ...+.+++.+.+++.+. .
T Consensus 374 g~l~~~GR~~~~i~~~G~~v~~~~ie~~i~~-~~~v~~~~v~~~~~~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~l~-~ 450 (483)
T PRK03640 374 GFLYVLDRRSDLIISGGENIYPAEIEEVLLS-HPGVAEAGVVGVPDDKWGQVPVAFVVKS-GEVTEEELRHFCEEKLA-K 450 (483)
T ss_pred CCEEEeecccCeEEeCCEEECHHHHHHHHHh-CCCeeEEEEEeCCCcccCCceEEEEEeC-CCCCHHHHHHHHHHhcc-C
Confidence 43 99999999999999999999999999 99999999998742 344444433 23345677777777766 4
Q ss_pred cCeeecEEEEEcCCCcccCCCchhhHHHHHHHHHc
Q psy14342 270 HHLIVGVAVVVDPGVVPINSRGEKQRMHLRDGFLA 304 (316)
Q Consensus 270 ~~~~~~~~~~~~~~~lP~t~~gKi~r~~l~~~~~~ 304 (316)
+..| ..+.++. ++|+|++||++|++|++.+.+
T Consensus 451 ~~~p-~~i~~~~--~iP~t~~gK~~r~~l~~~~~~ 482 (483)
T PRK03640 451 YKVP-KRFYFVE--ELPRNASGKLLRHELKQLVEE 482 (483)
T ss_pred CCCC-cEEEEeC--CCCCCCccceeHHHHHHHHhh
Confidence 5554 3555554 899999999999999998864
|
|
| >PRK09029 O-succinylbenzoic acid--CoA ligase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.2e-36 Score=282.03 Aligned_cols=280 Identities=15% Similarity=0.123 Sum_probs=210.0
Q ss_pred CeEEEEeccCCCCCceEEEEeHHHHHHHHHHHHHHhcCCCCCceEEecCCcCChhhhHHHHhhhhcCceeeeeCCccccc
Q psy14342 1 MLAYLDFSVSTTGMLAGIKMSHAAVTSLCRSMKLACELYPSRHIALCLDPYCGLGFALWVLSSVYSGHHSILIPPSEVEV 80 (316)
Q Consensus 1 ~~a~i~~TSGTTG~PK~V~~t~~~l~~~~~~~~~~~~~~~~d~~l~~~p~~h~~g~~~~~~~~l~~G~~~v~~~~~~~~~ 80 (316)
++++++|||||||.||+|.+||++++.........++..++|+++.++|++|.+|+.. ++.++..|+++++.+.
T Consensus 136 ~~a~i~~TSGTTG~PKgv~~s~~~~~~~~~~~~~~~~~~~~~~~l~~~p~~h~~g~~~-~~~~l~~G~~v~~~~~----- 209 (458)
T PRK09029 136 RLATMTLTSGSTGLPKAAVHTAQAHLASAEGVLSLMPFTAQDSWLLSLPLFHVSGQGI-VWRWLYAGATLVVRDK----- 209 (458)
T ss_pred CeEEEEECCCCCCCCCEEEEeHHHHHHHHHHHhhcCCCCccceEEEecCcHhhhhhHH-HHHHHhCCceEEeCCh-----
Confidence 5789999999999999999999999999888888899999999999999999999865 7788999999988653
Q ss_pred ChHHHHHHHhccceeeEEecccchhhHHhhHHhhhhhcccccccc----------------cccccccchhccCCCCCCC
Q psy14342 81 NPALWLSAVSQYRVRDTFCSYGMLAGIKMSHAAVTSLCRSMKLAC----------------ELYPSRHIALCLDPYCGLG 144 (316)
Q Consensus 81 ~~~~~~~~~~~~~~t~~~~~~~~~~~l~~~~~~~~~~~~~~~ls~----------------e~~~~yG~te~~~~~~~~~ 144 (316)
..+++.+. +++.+..+|+++..+........ ..+.+-.++ .+++.||+||++.......
T Consensus 210 --~~~~~~i~--~~t~~~~~P~~~~~l~~~~~~~~-~l~~i~~gG~~~~~~~~~~~~~~g~~~~~~YG~tE~~~~~~~~~ 284 (458)
T PRK09029 210 --QPLEQALA--GCTHASLVPTQLWRLLDNRSEPL-SLKAVLLGGAAIPVELTEQAEQQGIRCWCGYGLTEMASTVCAKR 284 (458)
T ss_pred --HHHHHHHh--hceeeecChHHHHHHHhccccCC-cceEEEECCCCCCHHHHHHHHHcCCcEeccccccccCcceeccC
Confidence 23455553 67777777777655443322110 011111111 3888999999864322111
Q ss_pred ceEEEEeeeccCcccccCCCce-EEecCceEEecC---CCcccCCCcCC----------CCceeeecCc---CCccccee
Q psy14342 145 FALWVLSSVYSGHHSILIPPSE-VEVNPALWLSAV---SQYRVRDTFCS----------CNGALYQGAE---RLALDETI 207 (316)
Q Consensus 145 ~~~~~~~~~~~g~~~~~~~g~~-~i~d~~l~v~~~---~gY~~~~~~~~----------~d~g~~~~g~---~GR~dd~i 207 (316)
. ......|.+++|++ ++.+++|+++|+ .|||++++.+. +|.|++++|. .||.||+|
T Consensus 285 ~-------~~~~~~G~~~~~~~~~i~~gel~v~g~~~~~gY~~~~~~~~~~~~~~~~~TGD~~~~~~g~l~~~gR~~d~i 357 (458)
T PRK09029 285 A-------DGLAGVGSPLPGREVKLVDGEIWLRGASLALGYWRQGQLVPLVNDEGWFATRDRGEWQNGELTILGRLDNLF 357 (458)
T ss_pred C-------CCCCCCCCCCCCCEEEEeCCEEEEecCceeeeeecCccccccccCCCccCCCCcEEEeCCEEEEecccccce
Confidence 0 01123445899999 899989999999 89998865442 2667777554 99999999
Q ss_pred EECCcccChHhHHHHHHHhccccceeEEEeeC-----CcEEEEEEecCCchhhcchHHHHHHHHHHhcCeeecEEEEEcC
Q psy14342 208 MLRGMRYHPIDIENSVMRAHKKIAECAVFTWT-----NLLVVVVELDGNESEALDLVPLVTNAVLEEHHLIVGVAVVVDP 282 (316)
Q Consensus 208 ~~~G~~v~p~eIE~~l~~~~p~v~~~~v~~~~-----~~~~~~v~~~~~~~~~~~l~~~~~~~l~~~~~~~~~~~~~~~~ 282 (316)
|++|++|+|.|||++|.+ ||.|.+|+|++.. +.++++++... ..+.+++.+.+++++. .+..| ..+.+++
T Consensus 358 ~~~G~~v~p~eiE~~l~~-~~~v~~~~v~~~~~~~~~~~~~a~v~~~~-~~~~~~l~~~~~~~l~-~~~~P-~~~~~~~- 432 (458)
T PRK09029 358 FSGGEGIQPEEIERVINQ-HPLVQQVFVVPVADAEFGQRPVAVVESDS-EAAVVNLAEWLQDKLA-RFQQP-VAYYLLP- 432 (458)
T ss_pred eeCCEEeCHHHHHHHHhc-CCCcceEEEEccCCcccCceEEEEEEcCc-ccCHHHHHHHHHhhch-hccCC-eEEEEec-
Confidence 999999999999999999 9999999999883 45666666553 2344578888888777 55555 3455554
Q ss_pred CCcccCCCchhhHHHHHHHHHc
Q psy14342 283 GVVPINSRGEKQRMHLRDGFLA 304 (316)
Q Consensus 283 ~~lP~t~~gKi~r~~l~~~~~~ 304 (316)
.+|+|++||++|+.|++.+..
T Consensus 433 -~~p~t~~gKi~r~~L~~~~~~ 453 (458)
T PRK09029 433 -PELKNGGIKISRQALKEWVAQ 453 (458)
T ss_pred -ccccCcCCCcCHHHHHHHHHh
Confidence 799999999999999988775
|
|
| >PRK07867 acyl-CoA synthetase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.9e-36 Score=287.14 Aligned_cols=294 Identities=12% Similarity=0.007 Sum_probs=211.9
Q ss_pred CeEEEEeccCCCCCceEEEEeHHHHHHHHHHHHHHhcCCCCCceEEecCCcCChhhhHHHHhhhhcCceeeeeCCccccc
Q psy14342 1 MLAYLDFSVSTTGMLAGIKMSHAAVTSLCRSMKLACELYPSRHIALCLDPYCGLGFALWVLSSVYSGHHSILIPPSEVEV 80 (316)
Q Consensus 1 ~~a~i~~TSGTTG~PK~V~~t~~~l~~~~~~~~~~~~~~~~d~~l~~~p~~h~~g~~~~~~~~l~~G~~~v~~~~~~~~~ 80 (316)
++++|+|||||||.||+|+++|+++..++..+...+++.++|+++.++|++|.++++..++.++..|+++++.++.
T Consensus 153 ~~~~i~~TSGTTG~PKgv~~s~~~l~~~~~~~~~~~~~~~~d~~l~~~pl~~~~~~~~~~~~~l~~G~~~~~~~~~---- 228 (529)
T PRK07867 153 DLFMLIFTSGTSGDPKAVRCTHRKVASAGVMLAQRFGLGPDDVCYVSMPLFHSNAVMAGWAVALAAGASIALRRKF---- 228 (529)
T ss_pred ceEEEEECCCCCCCCcEEEecHHHHHHHHHHHHHhhCCCcccEEEEecchhHHHHHHHHHHHHHhcCceEEecCCC----
Confidence 5789999999999999999999999988888888899999999999999999999988777889999999887532
Q ss_pred ChHHHHHHHhccceeeEEecccchhhHHhhHHhhhhhccccc--ccc----------------cccccccchhccCCCCC
Q psy14342 81 NPALWLSAVSQYRVRDTFCSYGMLAGIKMSHAAVTSLCRSMK--LAC----------------ELYPSRHIALCLDPYCG 142 (316)
Q Consensus 81 ~~~~~~~~~~~~~~t~~~~~~~~~~~l~~~~~~~~~~~~~~~--ls~----------------e~~~~yG~te~~~~~~~ 142 (316)
++..+++.+++++++.+...|+.+..+.............+. .++ .+++.||+||++.....
T Consensus 229 ~~~~~~~~i~~~~vt~~~~~p~~~~~ll~~~~~~~~~~~~lr~~~gg~~~~~~~~~~~~~~g~~l~~~YG~TE~~~~~~~ 308 (529)
T PRK07867 229 SASGFLPDVRRYGATYANYVGKPLSYVLATPERPDDADNPLRIVYGNEGAPGDIARFARRFGCVVVDGFGSTEGGVAITR 308 (529)
T ss_pred CHHHHHHHHHHhCCeEEeccHHHHHHHHhCCCcccccccceEEEecCCCChHHHHHHHHHhCCcEEEeeccccccccccc
Confidence 578899999999999888888776544332221100000111 111 28889999998643221
Q ss_pred CCceEEEEeeeccCcccccCCCceEEe-----------------------cCceEE-ecC---CCcccCCCcCC------
Q psy14342 143 LGFALWVLSSVYSGHHSILIPPSEVEV-----------------------NPALWL-SAV---SQYRVRDTFCS------ 189 (316)
Q Consensus 143 ~~~~~~~~~~~~~g~~~~~~~g~~~i~-----------------------d~~l~v-~~~---~gY~~~~~~~~------ 189 (316)
... ...++.+.+++|++.+- .++|++ +|+ .|||++++.+.
T Consensus 309 ~~~-------~~~~~~g~~~~~~~i~~~~~~~~~~~g~~~~~~~~~~~~~~Gel~i~~g~~~~~gy~~~~~~~~~~~~~g 381 (529)
T PRK07867 309 TPD-------TPPGALGPLPPGVAIVDPDTGTECPPAEDADGRLLNADEAIGELVNTAGPGGFEGYYNDPEADAERMRGG 381 (529)
T ss_pred CCC-------CCCCCcCCCCCCEEEEECCCCCCCCCCccccccccccCCcceEEEEecCCcccccccCChHhhhhhhcCC
Confidence 110 01122233455533211 123787 998 89999876542
Q ss_pred ----CCceeeec-Cc---CCcccceeEECCcccChHhHHHHHHHhccccceeEEEeeC-----CcEEEEEEecCCc-hhh
Q psy14342 190 ----CNGALYQG-AE---RLALDETIMLRGMRYHPIDIENSVMRAHKKIAECAVFTWT-----NLLVVVVELDGNE-SEA 255 (316)
Q Consensus 190 ----~d~g~~~~-g~---~GR~dd~i~~~G~~v~p~eIE~~l~~~~p~v~~~~v~~~~-----~~~~~~v~~~~~~-~~~ 255 (316)
+|.|++++ |. .||.||+||++|+||+|.|||++|.+ ||+|.+|+|++.. +++++++.+.++. .+.
T Consensus 382 ~~~TGD~~~~~~~g~l~~~GR~~d~i~~~G~~v~p~eIE~~l~~-~p~V~~~~V~g~~~~~~g~~~~a~vv~~~~~~~~~ 460 (529)
T PRK07867 382 VYWSGDLAYRDADGYAYFAGRLGDWMRVDGENLGTAPIERILLR-YPDATEVAVYAVPDPVVGDQVMAALVLAPGAKFDP 460 (529)
T ss_pred eEeeccEEEEeCCCcEEEeccccCeEEECCEEeCHHHHHHHHHh-CCCeeEEEEEeccCCCCCeeEEEEEEECCCCCCCH
Confidence 25666644 33 99999999999999999999999999 9999999999984 3566666665442 233
Q ss_pred cchHHHHHHH--HHHhcCeeecEEEEEcCCCcccCCCchhhHHHHHHHHHcCCCCcc
Q psy14342 256 LDLVPLVTNA--VLEEHHLIVGVAVVVDPGVVPINSRGEKQRMHLRDGFLADQLDPI 310 (316)
Q Consensus 256 ~~l~~~~~~~--l~~~~~~~~~~~~~~~~~~lP~t~~gKi~r~~l~~~~~~~~~~~~ 310 (316)
+++.+.++.+ +. .+..| ..+.+++ ++|+|++||++|++|++...++.++.+
T Consensus 461 ~~l~~~~~~~~~l~-~~~~P-~~i~~~~--~iP~t~~GKv~r~~L~~~~~~~~~~~~ 513 (529)
T PRK07867 461 DAFAEFLAAQPDLG-PKQWP-SYVRVCA--ELPRTATFKVLKRQLSAEGVDCADPVW 513 (529)
T ss_pred HHHHHHHHhhccCC-cccCC-eEEEEee--ccCCCCCcceeHHHHHHhcCCCCCCee
Confidence 5566666543 33 33344 3555554 899999999999999999887666654
|
|
| >PRK13388 acyl-CoA synthetase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.2e-36 Score=287.50 Aligned_cols=289 Identities=12% Similarity=0.041 Sum_probs=208.1
Q ss_pred CeEEEEeccCCCCCceEEEEeHHHHHHHHHHHHHHhcCCCCCceEEecCCcCChhhhHHHHhhhhcCceeeeeCCccccc
Q psy14342 1 MLAYLDFSVSTTGMLAGIKMSHAAVTSLCRSMKLACELYPSRHIALCLDPYCGLGFALWVLSSVYSGHHSILIPPSEVEV 80 (316)
Q Consensus 1 ~~a~i~~TSGTTG~PK~V~~t~~~l~~~~~~~~~~~~~~~~d~~l~~~p~~h~~g~~~~~~~~l~~G~~~v~~~~~~~~~ 80 (316)
|+++|+|||||||.||||.++|+++..........+++.++|+++.++|++|.++++..++.++..|+++++.+..
T Consensus 151 ~~a~i~~TSGTTG~PKgv~~s~~~~~~~~~~~~~~~~~~~~d~~l~~~p~~~~~~~~~~~~~~l~~G~~~v~~~~~---- 226 (540)
T PRK13388 151 DPFMLIFTSGTTGAPKAVRCSHGRLAFAGRALTERFGLTRDDVCYVSMPLFHSNAVMAGWAPAVASGAAVALPAKF---- 226 (540)
T ss_pred CeEEEEECCCCCCCCCEEEecHHHHHHHHHHHHHHhCCCCCCEEEEeeCchhhcchHHHHHHHHHcCcEEEECCCC----
Confidence 5899999999999999999999999988888888899999999999999999999887666789999999886432
Q ss_pred ChHHHHHHHhccceeeEEecccchhhHHhhHHhhhhhccccc--ccc----------------cccccccchhccCCCCC
Q psy14342 81 NPALWLSAVSQYRVRDTFCSYGMLAGIKMSHAAVTSLCRSMK--LAC----------------ELYPSRHIALCLDPYCG 142 (316)
Q Consensus 81 ~~~~~~~~~~~~~~t~~~~~~~~~~~l~~~~~~~~~~~~~~~--ls~----------------e~~~~yG~te~~~~~~~ 142 (316)
++..+++.+++++++++...|..+..+.............+. +.+ .+++.||+||++.....
T Consensus 227 ~~~~~~~~i~~~~vt~~~~~p~~l~~l~~~~~~~~~~~~~l~~~~G~~~~~~~~~~~~~~~~~~l~~~YG~tE~~~~~~~ 306 (540)
T PRK13388 227 SASGFLDDVRRYGATYFNYVGKPLAYILATPERPDDADNPLRVAFGNEASPRDIAEFSRRFGCQVEDGYGSSEGAVIVVR 306 (540)
T ss_pred CHHHHHHHHHHhCCeEEEehHHHHHHHHhCCCCccccccceEEEECCCCCHHHHHHHHHHhCCceecccccccccceeec
Confidence 578899999999999888777776544322211100000111 111 38889999998643321
Q ss_pred CCceEEEEeeeccCcccccCCCce-E-----------Eec------------CceEEe-cC---CCcccCCCcCC-----
Q psy14342 143 LGFALWVLSSVYSGHHSILIPPSE-V-----------EVN------------PALWLS-AV---SQYRVRDTFCS----- 189 (316)
Q Consensus 143 ~~~~~~~~~~~~~g~~~~~~~g~~-~-----------i~d------------~~l~v~-~~---~gY~~~~~~~~----- 189 (316)
.+ ....++.|.+++|++ . ++| ++|+++ |+ .|||++++.+.
T Consensus 307 -~~------~~~~~~vG~p~~g~~i~~~~~~~~~~~~~~d~~g~~~~~~~~~GEl~v~~g~~~~~gY~~~~~~t~~~~~~ 379 (540)
T PRK13388 307 -EP------GTPPGSIGRGAPGVAIYNPETLTECAVARFDAHGALLNADEAIGELVNTAGAGFFEGYYNNPEATAERMRH 379 (540)
T ss_pred -CC------CCCCCCCCCCCCCcEEEcCCCCccccceeccCccccccCCCcceEEEEecCCcccccccCChHHHHHHhhc
Confidence 11 011233444566655 2 111 128887 88 89999876553
Q ss_pred -----CCceeeec-Cc---CCcccceeEECCcccChHhHHHHHHHhccccceeEEEeeC-----CcEEEEEEecCCc-hh
Q psy14342 190 -----CNGALYQG-AE---RLALDETIMLRGMRYHPIDIENSVMRAHKKIAECAVFTWT-----NLLVVVVELDGNE-SE 254 (316)
Q Consensus 190 -----~d~g~~~~-g~---~GR~dd~i~~~G~~v~p~eIE~~l~~~~p~v~~~~v~~~~-----~~~~~~v~~~~~~-~~ 254 (316)
+|.|++++ |. .||.||+||++|++|+|.|||++|.+ ||.|.+|+|++.. +.+++++++.+.. .+
T Consensus 380 g~~~TGD~~~~~~dg~l~i~GR~~d~i~~~G~~v~p~eIE~~l~~-~~~V~~~~v~g~~~~~~g~~~~~~v~~~~~~~~~ 458 (540)
T PRK13388 380 GMYWSGDLAYRDADGWIYFAGRTADWMRVDGENLSAAPIERILLR-HPAINRVAVYAVPDERVGDQVMAALVLRDGATFD 458 (540)
T ss_pred CceeccceEEEcCCCcEEEeccCCceEEECCEEeCHHHHHHHHHh-CCCceEEEEEEccCCCCCceeEEEEEECCCCcCC
Confidence 25666643 33 99999999999999999999999999 9999999999984 3555656555432 23
Q ss_pred hcchHHHHHHH--HHHhcCeeecEEEEEcCCCcccCCCchhhHHHHHHHHHcC
Q psy14342 255 ALDLVPLVTNA--VLEEHHLIVGVAVVVDPGVVPINSRGEKQRMHLRDGFLAD 305 (316)
Q Consensus 255 ~~~l~~~~~~~--l~~~~~~~~~~~~~~~~~~lP~t~~gKi~r~~l~~~~~~~ 305 (316)
.+++.++++.+ +. .+..| ..+.+++ ++|+|++||++|++|++...+.
T Consensus 459 ~~~l~~~l~~~~~l~-~~~~P-~~~~~v~--~iP~t~~GKv~R~~L~~~~~~~ 507 (540)
T PRK13388 459 PDAFAAFLAAQPDLG-TKAWP-RYVRIAA--DLPSTATNKVLKRELIAQGWAT 507 (540)
T ss_pred HHHHHHHHHhhccCC-cccCC-cEEEEec--cCCCCCcceeeHHhHHHhccCC
Confidence 34566666543 33 33333 4555555 9999999999999999987664
|
|
| >PRK06145 acyl-CoA synthetase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.1e-36 Score=284.79 Aligned_cols=291 Identities=14% Similarity=0.056 Sum_probs=217.7
Q ss_pred CeEEEEeccCCCCCceEEEEeHHHHHHHHHHHHHHhcCCCCCceEEecCCcCChhhhHHHHhhhhcCceeeeeCCccccc
Q psy14342 1 MLAYLDFSVSTTGMLAGIKMSHAAVTSLCRSMKLACELYPSRHIALCLDPYCGLGFALWVLSSVYSGHHSILIPPSEVEV 80 (316)
Q Consensus 1 ~~a~i~~TSGTTG~PK~V~~t~~~l~~~~~~~~~~~~~~~~d~~l~~~p~~h~~g~~~~~~~~l~~G~~~v~~~~~~~~~ 80 (316)
|+++++|||||||.||+|.++|+++...+......+++..+|+++.+.|++|.+++....+..+..|+++++.+..
T Consensus 150 ~~a~i~~TSGTTG~PK~v~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~l~~g~~~~~~~~~---- 225 (497)
T PRK06145 150 DLVRLMYTSGTTDRPKGVMHSYGNLHWKSIDHVIALGLTASERLLVVGPLYHVGAFDLPGIAVLWVGGTLRIHREF---- 225 (497)
T ss_pred ceEEEEeCCCCCCCCcEEEEecHHHHHHHHHHHHhhCCCCCcEEEEecCchhHhHHHHHHHHHHhccCEEEECCcC----
Confidence 5789999999999999999999999877666667788999999999999999999877677889999998886532
Q ss_pred ChHHHHHHHhccceeeEEecccchhhHHhhHHhhhh---hcccccccc------------------cccccccchhccCC
Q psy14342 81 NPALWLSAVSQYRVRDTFCSYGMLAGIKMSHAAVTS---LCRSMKLAC------------------ELYPSRHIALCLDP 139 (316)
Q Consensus 81 ~~~~~~~~~~~~~~t~~~~~~~~~~~l~~~~~~~~~---~~~~~~ls~------------------e~~~~yG~te~~~~ 139 (316)
++..+++.++++++++++.+|+++..+......... ..+.+-.++ .+++.||+||++..
T Consensus 226 ~~~~~~~~i~~~~~t~~~~~P~~~~~ll~~~~~~~~~~~~l~~~~~gG~~~~~~~~~~~~~~~~~~~v~~~YG~tE~~~~ 305 (497)
T PRK06145 226 DPEAVLAAIERHRLTCAWMAPVMLSRVLTVPDRDRFDLDSLAWCIGGGEKTPESRIRDFTRVFTRARYIDAYGLTETCSG 305 (497)
T ss_pred CHHHHHHHHHHhCCeEEEehHHHHHHHHcCCCccccccccceEEEecCCCCCHHHHHHHHHHcCCCceEEeecCcccCCc
Confidence 688999999999999999999988765433221100 011111111 27889999999753
Q ss_pred CCCCCceEEEEeeeccCcccccCCCce-EEecCc-----------eEEecC---CCcccCCCcC----------CCCcee
Q psy14342 140 YCGLGFALWVLSSVYSGHHSILIPPSE-VEVNPA-----------LWLSAV---SQYRVRDTFC----------SCNGAL 194 (316)
Q Consensus 140 ~~~~~~~~~~~~~~~~g~~~~~~~g~~-~i~d~~-----------l~v~~~---~gY~~~~~~~----------~~d~g~ 194 (316)
....... ......++.+.+++|++ ++.|++ |+++|+ .|||++++.+ ++|.|+
T Consensus 306 ~~~~~~~---~~~~~~~~~G~~~~~~~~~i~~~~~~~~~~~~~Gel~v~g~~~~~Gy~~~~~~~~~~~~~~~~~TGDl~~ 382 (497)
T PRK06145 306 DTLMEAG---REIEKIGSTGRALAHVEIRIADGAGRWLPPNMKGEICMRGPKVTKGYWKDPEKTAEAFYGDWFRSGDVGY 382 (497)
T ss_pred ceeccCc---cccccCCCcccCCCCceEEEECCCCCCCCCCCceEEEEECcchhhhhcCChHHHHHHHhCCCeeccceEE
Confidence 3211110 00112234556899999 887653 999999 8999986654 336676
Q ss_pred eec-Cc---CCcccceeEECCcccChHhHHHHHHHhccccceeEEEeeC-----CcEEEEEEecCCc-hhhcchHHHHHH
Q psy14342 195 YQG-AE---RLALDETIMLRGMRYHPIDIENSVMRAHKKIAECAVFTWT-----NLLVVVVELDGNE-SEALDLVPLVTN 264 (316)
Q Consensus 195 ~~~-g~---~GR~dd~i~~~G~~v~p~eIE~~l~~~~p~v~~~~v~~~~-----~~~~~~v~~~~~~-~~~~~l~~~~~~ 264 (316)
+++ |. +||.||+||++|++|+|.|||++|.+ +|.|.+++|++.. +.+++++++.+.. .+.+++.+.+++
T Consensus 383 ~~~~g~l~~~GR~~~~i~~~G~~v~~~~IE~~l~~-~~~v~~~~v~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~~ 461 (497)
T PRK06145 383 LDEEGFLYLTDRKKDMIISGGENIASSEVERVIYE-LPEVAEAAVIGVHDDRWGERITAVVVLNPGATLTLEALDRHCRQ 461 (497)
T ss_pred EcCCCcEEEeccccceEEeCCeEECHHHHHHHHHh-CCCeeEEEEEecCCCccCceEEEEEEECCCCCCCHHHHHHHHHH
Confidence 654 43 89999999999999999999999999 9999999999873 4567777665432 234577788887
Q ss_pred HHHHhcCeeecEEEEEcCCCcccCCCchhhHHHHHHHHH
Q psy14342 265 AVLEEHHLIVGVAVVVDPGVVPINSRGEKQRMHLRDGFL 303 (316)
Q Consensus 265 ~l~~~~~~~~~~~~~~~~~~lP~t~~gKi~r~~l~~~~~ 303 (316)
.+. .+..| ..+.++ +++|+|++||++|++|++.+.
T Consensus 462 ~l~-~~~~p-~~i~~v--~~iP~t~~GKi~r~~l~~~~~ 496 (497)
T PRK06145 462 RLA-SFKVP-RQLKVR--DELPRNPSGKVLKRVLRDELN 496 (497)
T ss_pred hhh-cCCCC-CEEEEe--ccCCCCCcccccHHHHHHHhc
Confidence 776 45554 345555 489999999999999998764
|
|
| >PRK12467 peptide synthase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.4e-37 Score=343.17 Aligned_cols=296 Identities=15% Similarity=0.128 Sum_probs=220.0
Q ss_pred CeEEEEeccCCCCCceEEEEeHHHHHHHHHHHHHHhcCCCCCceEEecCCcCChhhhHHHHhhhhcCceeeeeCCccccc
Q psy14342 1 MLAYLDFSVSTTGMLAGIKMSHAAVTSLCRSMKLACELYPSRHIALCLDPYCGLGFALWVLSSVYSGHHSILIPPSEVEV 80 (316)
Q Consensus 1 ~~a~i~~TSGTTG~PK~V~~t~~~l~~~~~~~~~~~~~~~~d~~l~~~p~~h~~g~~~~~~~~l~~G~~~v~~~~~~~~~ 80 (316)
|+|||+|||||||+||||+++|+++.+.+......+++.++|+++.+.|++|+.+... ++.++..|+++++.+ . ...
T Consensus 3238 ~~a~ii~TSGSTG~PKgV~~~h~~l~~~~~~~~~~~~~~~~d~~l~~~~~~fd~~~~~-~~~~L~~G~~l~i~~-~-~~~ 3314 (3956)
T PRK12467 3238 NLAYVIYTSGSTGKPKGVGVRHGALANHLCWIAEAYELDANDRVLLFMSFSFDGAQER-FLWTLICGGCLVVRD-N-DLW 3314 (3956)
T ss_pred ceEEEEEccCCCCCcceeeehhHHHHHHHHHHHHhcCCCcCCEEEEecCccHhHHHHH-HHHHHhCCCEEEECC-c-ccC
Confidence 5799999999999999999999999999999999999999999999999999988766 899999999999876 2 234
Q ss_pred ChHHHHHHHhccceeeEEecccchhhHHhhHHhh-hhhcccccccc------------------cccccccchhccCCCC
Q psy14342 81 NPALWLSAVSQYRVRDTFCSYGMLAGIKMSHAAV-TSLCRSMKLAC------------------ELYPSRHIALCLDPYC 141 (316)
Q Consensus 81 ~~~~~~~~~~~~~~t~~~~~~~~~~~l~~~~~~~-~~~~~~~~ls~------------------e~~~~yG~te~~~~~~ 141 (316)
+|..+++.++++++|++..+|+++..+....... ....+.+.+++ .+++.||+||++....
T Consensus 3315 ~~~~l~~~i~~~~vt~~~~~Ps~l~~l~~~~~~~~~~~lr~~~~gGe~~~~~~~~~~~~~~~~~~l~n~YG~TE~~~~~~ 3394 (3956)
T PRK12467 3315 DPEELWQAIHAHRISIACFPPAYLQQFAEDAGGADCASLDIYVFGGEAVPPAAFEQVKRKLKPRGLTNGYGPTEAVVTVT 3394 (3956)
T ss_pred CHHHHHHHHHHcCCEEEEcCHHHHHHHHhcccccCCCCceEEEEecCCCCHHHHHHHHHhCCCCEEEeCcccchhEeeeE
Confidence 7899999999999999999999887654322110 00112222222 1788999999874322
Q ss_pred CCCceEEEEeeeccCcccccCCCce-EEecCc-----------eEEecC---CCcccCCCcCCC----------------
Q psy14342 142 GLGFALWVLSSVYSGHHSILIPPSE-VEVNPA-----------LWLSAV---SQYRVRDTFCSC---------------- 190 (316)
Q Consensus 142 ~~~~~~~~~~~~~~g~~~~~~~g~~-~i~d~~-----------l~v~~~---~gY~~~~~~~~~---------------- 190 (316)
...............+.|.|++|.+ +++|++ |+++|+ .|||++++.|+.
T Consensus 3395 ~~~~~~~~~~~~~~~~iG~p~~~~~~~v~d~~~~~vp~G~~GEL~i~G~~v~~GY~~~~~~T~~~F~~~p~~~~g~r~yr 3474 (3956)
T PRK12467 3395 LWKCGGDAVCEAPYAPIGRPVAGRSIYVLDGQLNPVPVGVAGELYIGGVGLARGYHQRPSLTAERFVADPFSGSGGRLYR 3474 (3956)
T ss_pred EEecccccccCCCCCCCccccCCCEEEEECCCCCCCCCCCCceEEEcchhhhhhccCCcccchhhccCCCCCCCCceeec
Confidence 1110000000001124566899999 888754 999999 999999876543
Q ss_pred --Cceeeec-Cc---CCcccceeEECCcccChHhHHHHHHHhccccceeEEEeeC----CcEEEEEEecCC-chhhcchH
Q psy14342 191 --NGALYQG-AE---RLALDETIMLRGMRYHPIDIENSVMRAHKKIAECAVFTWT----NLLVVVVELDGN-ESEALDLV 259 (316)
Q Consensus 191 --d~g~~~~-g~---~GR~dd~i~~~G~~v~p~eIE~~l~~~~p~v~~~~v~~~~----~~~~~~v~~~~~-~~~~~~l~ 259 (316)
|.|++++ |. +||.||+||++|.||.|.|||++|.+ ||+|.+|+|++.. +++++++..... ....+++.
T Consensus 3475 TGDl~~~~~dG~l~~~GR~d~~iki~G~rIe~~EIE~~l~~-~p~V~~a~v~~~~~~~~~~lva~v~~~~~~~~~~~~l~ 3553 (3956)
T PRK12467 3475 TGDLARYRADGVIEYLGRIDHQVKIRGFRIELGEIEARLLQ-HPSVREAVVLARDGAGGKQLVAYVVPADPQGDWRETLR 3553 (3956)
T ss_pred cchhheecCCCcEEEeccccceEeeceEeecHHHHHHHHhh-CcccceEEEEEecCCCCcEEEEEEeCCCCCcccHHHHH
Confidence 4555543 43 99999999999999999999999999 9999999999873 467777766543 22334566
Q ss_pred HHHHHHHHHhcCeeecEEEEEcCCCcccCCCchhhHHHHHHHHHc
Q psy14342 260 PLVTNAVLEEHHLIVGVAVVVDPGVVPINSRGEKQRMHLRDGFLA 304 (316)
Q Consensus 260 ~~~~~~l~~~~~~~~~~~~~~~~~~lP~t~~gKi~r~~l~~~~~~ 304 (316)
+.+++.++ .+..| ..+.++ +.||+|++||++|++|.+....
T Consensus 3554 ~~l~~~Lp-~y~vP-~~~~~l--~~lP~t~~GKidR~~L~~~~~~ 3594 (3956)
T PRK12467 3554 DHLAASLP-DYMVP-AQLLVL--AAMPLGPNGKVDRKALPDPDAK 3594 (3956)
T ss_pred HHHhccCC-hhhCC-Ceeeee--ccCCCCCCCccchhhcCCCCcc
Confidence 66666665 34444 344444 4899999999999999876544
|
|
| >TIGR03208 cyc_hxne_CoA_lg cyclohexanecarboxylate-CoA ligase | Back alignment and domain information |
|---|
Probab=100.00 E-value=3e-36 Score=286.52 Aligned_cols=287 Identities=17% Similarity=0.113 Sum_probs=213.2
Q ss_pred CeEEEEeccCCCCCceEEEEeHHHHHHHHHHHHHHhcCCCCCceEEecCCcCChhhhHHHHhhhhcCceeeeeCCccccc
Q psy14342 1 MLAYLDFSVSTTGMLAGIKMSHAAVTSLCRSMKLACELYPSRHIALCLDPYCGLGFALWVLSSVYSGHHSILIPPSEVEV 80 (316)
Q Consensus 1 ~~a~i~~TSGTTG~PK~V~~t~~~l~~~~~~~~~~~~~~~~d~~l~~~p~~h~~g~~~~~~~~l~~G~~~v~~~~~~~~~ 80 (316)
++++|+|||||||.||+|+++|+++...+......+++..+|+++.++|++|..|++..++.++..|+++++.+. .
T Consensus 196 ~~a~i~~TSGtTG~PK~v~~s~~~~~~~~~~~~~~~~~~~~d~~l~~~pl~h~~g~~~~~~~~l~~g~~~~~~~~----~ 271 (538)
T TIGR03208 196 DVTQLIYTSGTTGEPKGVMHTANTLFSNIHPYAERLELGGGDVILMASPMAHQTGFMYGLMMPLILNATAVLQDI----W 271 (538)
T ss_pred CeEEEEECCCCCCCCcEEEeehHHHHHHHHHHHhhcCCCCCCeEEEeCCchhHHHHHHHHHHHHHcCCEEEecCc----c
Confidence 578999999999999999999999999888888888999999999999999999988888999999999988653 2
Q ss_pred ChHHHHHHHhccceeeEEecccchhhHHhhHHhhh---hhcccccccc-----------------cccccccchhccCCC
Q psy14342 81 NPALWLSAVSQYRVRDTFCSYGMLAGIKMSHAAVT---SLCRSMKLAC-----------------ELYPSRHIALCLDPY 140 (316)
Q Consensus 81 ~~~~~~~~~~~~~~t~~~~~~~~~~~l~~~~~~~~---~~~~~~~ls~-----------------e~~~~yG~te~~~~~ 140 (316)
+|..+++.+++++++++...|+++..+........ ...+.+-.++ .+++.||+||++...
T Consensus 272 ~~~~~~~~l~~~~vt~~~~~p~~~~~l~~~~~~~~~~~~~l~~~~~gG~~~~~~~~~~~~~~~~~~~~~~YG~tE~~~~~ 351 (538)
T TIGR03208 272 NPARAAELIRETGVTFTMASTPFLTDLCRAVKESGAPVPSLFTFLCAGAPIPGILVERAWELLGALIVSAWGMTENGAVT 351 (538)
T ss_pred CHHHHHHHHHHhCCeEEecCHHHHHHHHhchhccCCCCCcceEEEEcCCCCCHHHHHHHHHHcCCeEEeeeccCcCCCcc
Confidence 68899999999999998888888765443221100 0011111111 278899999986433
Q ss_pred CCCCceEEEEeeeccCcccccCCCce-EEecCc-----------eEEecC---CCcccCCCcCC---------CCceeee
Q psy14342 141 CGLGFALWVLSSVYSGHHSILIPPSE-VEVNPA-----------LWLSAV---SQYRVRDTFCS---------CNGALYQ 196 (316)
Q Consensus 141 ~~~~~~~~~~~~~~~g~~~~~~~g~~-~i~d~~-----------l~v~~~---~gY~~~~~~~~---------~d~g~~~ 196 (316)
....... .....++.|.++||++ +++|++ |+++|+ .|||++++.+. +|.|+++
T Consensus 352 ~~~~~~~---~~~~~~~~G~~~~g~~v~i~~~~~~~~~~g~~Gel~v~g~~~~~gy~~~~~~~~~~~~~~~~TGD~~~~~ 428 (538)
T TIGR03208 352 VTEPDDA---LEKASTTDGRPLPGVEVKVIDANGAKLSQGETGRLLVRGCSNFGGYLKRPHLNSTDAEGWFDTGDLAFQD 428 (538)
T ss_pred ccCcccc---hhhccCcccccCCCCEEEEECCCCCCCcCCCCcEEEEecCcccccccCCcccccccCCCceeccceEEEC
Confidence 2111110 0001123445899999 887653 999999 89999876543 2556664
Q ss_pred c-Cc---CCcccceeEECCcccChHhHHHHHHHhccccceeEEEeeC-----CcEEEEEEecCCc-hhhcchHHHHHH-H
Q psy14342 197 G-AE---RLALDETIMLRGMRYHPIDIENSVMRAHKKIAECAVFTWT-----NLLVVVVELDGNE-SEALDLVPLVTN-A 265 (316)
Q Consensus 197 ~-g~---~GR~dd~i~~~G~~v~p~eIE~~l~~~~p~v~~~~v~~~~-----~~~~~~v~~~~~~-~~~~~l~~~~~~-~ 265 (316)
+ |. +||.||+|+++|++|+|.|||++|.+ ||.|.+++|++.. +.+.+++++.+.. .+..++.+.++. .
T Consensus 429 ~~g~l~~~gR~~~~i~~~G~~v~p~eIE~~l~~-~~~v~~~~v~~~~~~~~g~~~~a~v~~~~~~~~~~~~l~~~~~~~~ 507 (538)
T TIGR03208 429 AEGYIRINGRSKDVIIRGGENIPVVEIENLLYQ-HPAVAQVAIVAYPDERLGERACAVVVPKPGCTLDFAAMVAFLKAQK 507 (538)
T ss_pred CCCcEEEEeccCceEEECCEEECHHHHHHHHhc-CcceeeEEEEeccCCCCCceEEEEEEECCCCCCCHHHHHHHHHhcc
Confidence 3 33 99999999999999999999999999 9999999999883 4567777665432 233566777764 3
Q ss_pred HHHhcCeeecEEEEEcCCCcccCCCchhhHHHHH
Q psy14342 266 VLEEHHLIVGVAVVVDPGVVPINSRGEKQRMHLR 299 (316)
Q Consensus 266 l~~~~~~~~~~~~~~~~~~lP~t~~gKi~r~~l~ 299 (316)
+. .+..| ..+.+++ ++|+|++||++|++|+
T Consensus 508 l~-~~~~P-~~i~~v~--~iP~t~~gKv~r~~L~ 537 (538)
T TIGR03208 508 VA-LQYIP-ERLEVVD--ALPATPAGKIQKFRLR 537 (538)
T ss_pred hh-hccCC-cEEEEec--cCCCCCccccchHhhc
Confidence 44 44444 4566655 8999999999999986
|
Members of this protein family are cyclohexanecarboxylate-CoA ligase. This enzyme prepares the aliphatic ring compound, cyclohexanecarboxylate, for dehydrogenation and then degradation by a pathway also used in benzoyl-CoA degradation in Rhodopseudomonas palustris. |
| >PRK05620 long-chain-fatty-acid--CoA ligase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.6e-36 Score=287.50 Aligned_cols=301 Identities=15% Similarity=0.101 Sum_probs=212.0
Q ss_pred CeEEEEeccCCCCCceEEEEeHHHHHHHHHHH--HHHhcCCCCCceEEecCCcCChhhhHHHHhhhhcCceeeeeCCccc
Q psy14342 1 MLAYLDFSVSTTGMLAGIKMSHAAVTSLCRSM--KLACELYPSRHIALCLDPYCGLGFALWVLSSVYSGHHSILIPPSEV 78 (316)
Q Consensus 1 ~~a~i~~TSGTTG~PK~V~~t~~~l~~~~~~~--~~~~~~~~~d~~l~~~p~~h~~g~~~~~~~~l~~G~~~v~~~~~~~ 78 (316)
|+++++|||||||.||+|.++|+++....... ...+++.++|+++.++|++|.+++.. .+.++..|+++++..+. +
T Consensus 182 ~~a~i~~TSGTTG~PKgv~~s~~~l~~~~~~~~~~~~~~~~~~~~~l~~~pl~h~~g~~~-~~~~l~~g~~~~~~~~~-~ 259 (576)
T PRK05620 182 TAAAICYSTGTTGAPKGVVYSHRSLYLQSLSLRTTDSLAVTHGESFLCCVPIYHVLSWGV-PLAAFMSGTPLVFPGPD-L 259 (576)
T ss_pred ceeEEEECCCCCCCCceEEEEcHHHHHHHHHhhhhhhcCCCCCCeEEEeCChHHhhhhHH-HHHHHhcCceEEecCCC-C
Confidence 47899999999999999999999986654432 34577888999999999999999876 78899999999886543 2
Q ss_pred ccChHHHHHHHhccceeeEEecccchhhHHhhHH-hhhh--hcccccccc-----------------cccccccchhccC
Q psy14342 79 EVNPALWLSAVSQYRVRDTFCSYGMLAGIKMSHA-AVTS--LCRSMKLAC-----------------ELYPSRHIALCLD 138 (316)
Q Consensus 79 ~~~~~~~~~~~~~~~~t~~~~~~~~~~~l~~~~~-~~~~--~~~~~~ls~-----------------e~~~~yG~te~~~ 138 (316)
+|..+++.++++++++++.+|+.+..+..... .... ..+.+-..+ .+++.||+||++.
T Consensus 260 --~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~l~~~~~gG~~~~~~~~~~~~~~~~~~~~~~YG~tE~~~ 337 (576)
T PRK05620 260 --SAPTLAKIIATAMPRVAHGVPTLWIQLMVHYLKNPPERMSLQEIYVGGSAVPPILIKAWEERYGVDVVHVWGMTETSP 337 (576)
T ss_pred --CHHHHHHHHHHhcCceeeecCHHHHHHHHHhhccCcccCceeEEEEcCCCCCHHHHHHHHHHhCCceeeecccccccc
Confidence 68899999999999999999988765443221 1000 011111111 2788999999875
Q ss_pred CCCCCCc-eEEEEee--eccCcccccCCCce-EEecC------------ceEEecC---CCcccCCCcC-----------
Q psy14342 139 PYCGLGF-ALWVLSS--VYSGHHSILIPPSE-VEVNP------------ALWLSAV---SQYRVRDTFC----------- 188 (316)
Q Consensus 139 ~~~~~~~-~~~~~~~--~~~g~~~~~~~g~~-~i~d~------------~l~v~~~---~gY~~~~~~~----------- 188 (316)
......+ ....... ......+.+.+|++ +++|+ +|+++|+ .|||++++.+
T Consensus 338 ~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~i~~~g~~~~~~~~~~Gel~v~g~~~~~gY~~~~~~t~~~~~~~f~~~ 417 (576)
T PRK05620 338 VGTVARPPSGVSGEARWAYRVSQGRFPASLEYRIVNDGQVMESTDRNEGEIQVRGNWVTASYYHSPTEEGGGAASTFRGE 417 (576)
T ss_pred ceeeeccCCccccccccccccccCCcCCceeEEEecCCccccCCCCCceEEEEEcCcccccccCCccccccccccccccc
Confidence 3221111 0000000 00012233567777 66543 2899998 8999987655
Q ss_pred ----------------CCCceeeec-Cc---CCcccceeEECCcccChHhHHHHHHHhccccceeEEEeeC-----CcEE
Q psy14342 189 ----------------SCNGALYQG-AE---RLALDETIMLRGMRYHPIDIENSVMRAHKKIAECAVFTWT-----NLLV 243 (316)
Q Consensus 189 ----------------~~d~g~~~~-g~---~GR~dd~i~~~G~~v~p~eIE~~l~~~~p~v~~~~v~~~~-----~~~~ 243 (316)
++|.|++++ |. .||.||+|+.+|++|+|.|||++|.+ ||.|.+|+|++.. +.++
T Consensus 418 ~~~~~~~~~~~~g~~~TGD~~~~~~dg~l~~~GR~~d~i~~~G~~i~~~eIE~~l~~-~p~v~~~~vv~~~~~~~g~~~~ 496 (576)
T PRK05620 418 DVEDANDRFTADGWLRTGDVGSVTRDGFLTIHDRARDVIRSGGEWIYSAQLENYIMA-APEVVECAVIGYPDDKWGERPL 496 (576)
T ss_pred cchhhhcccccCCcEecCceEEEcCCceEEEEechhhhhhcCCEEEcHHHHHHHHhc-CCCceEEEEEeccCCCcCceeE
Confidence 124444433 32 99999999999999999999999999 9999999999883 3455
Q ss_pred EEEEecCCch----hhcchHHHHHHHHHHhcCeeecEEEEEcCCCcccCCCchhhHHHHHHHHHcCCCCcc
Q psy14342 244 VVVELDGNES----EALDLVPLVTNAVLEEHHLIVGVAVVVDPGVVPINSRGEKQRMHLRDGFLADQLDPI 310 (316)
Q Consensus 244 ~~v~~~~~~~----~~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~lP~t~~gKi~r~~l~~~~~~~~~~~~ 310 (316)
+++.+.+... ..+++.+++++.+. .+..| ..+.+++ ++|+|++||++|++|++.+..++++.+
T Consensus 497 a~v~~~~~~~~~~~~~~~l~~~l~~~L~-~~~~P-~~i~~v~--~~P~t~~GKv~r~~L~~~~~~~~~~~~ 563 (576)
T PRK05620 497 AVTVLAPGIEPTRETAERLRDQLRDRLP-NWMLP-EYWTFVD--EIDKTSVGKFDKKDLRQHLADGDFEII 563 (576)
T ss_pred EEEEecCCCCcccccHHHHHHHHHhhCc-cccCC-eEEEEec--cCCCCCcccCcHHHHHHHHhcCCccEE
Confidence 5555554322 22456666666666 34444 4555555 899999999999999999998876543
|
|
| >PRK08279 long-chain-acyl-CoA synthetase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.4e-36 Score=290.74 Aligned_cols=290 Identities=14% Similarity=0.092 Sum_probs=201.3
Q ss_pred CeEEEEeccCCCCCceEEEEeHHHHHHHHHHHHHHhcCCCCCceEEecCCcCChhhhHHHHhhhhcCceeeeeCCccccc
Q psy14342 1 MLAYLDFSVSTTGMLAGIKMSHAAVTSLCRSMKLACELYPSRHIALCLDPYCGLGFALWVLSSVYSGHHSILIPPSEVEV 80 (316)
Q Consensus 1 ~~a~i~~TSGTTG~PK~V~~t~~~l~~~~~~~~~~~~~~~~d~~l~~~p~~h~~g~~~~~~~~l~~G~~~v~~~~~~~~~ 80 (316)
++++|+|||||||.||+|.+||+++..++......+++.++|+++.++|++|.+|++..++.++..|+++++.++.
T Consensus 200 ~~a~il~TSGTTG~PKgV~~sh~~l~~~~~~~~~~~~l~~~d~~l~~~pl~h~~g~~~~~~~~l~~G~~~v~~~~~---- 275 (600)
T PRK08279 200 DTAFYIYTSGTTGLPKAAVMSHMRWLKAMGGFGGLLRLTPDDVLYCCLPLYHNTGGTVAWSSVLAAGATLALRRKF---- 275 (600)
T ss_pred ccEEEEEcCCCCCCCcEEEEeHHHHHHHHHHHHHhcCCCCCcEEEEecCchhhhhHHHHHHHHHhcCcEEEEcCCC----
Confidence 5789999999999999999999999999988888899999999999999999999988777888889988886532
Q ss_pred ChHHHHHHHhccceeeEEecccchhhHHhhHHhhhhhccccccc-c------------------cccccccchhccCCCC
Q psy14342 81 NPALWLSAVSQYRVRDTFCSYGMLAGIKMSHAAVTSLCRSMKLA-C------------------ELYPSRHIALCLDPYC 141 (316)
Q Consensus 81 ~~~~~~~~~~~~~~t~~~~~~~~~~~l~~~~~~~~~~~~~~~ls-~------------------e~~~~yG~te~~~~~~ 141 (316)
++..+++.++++++|++..+|+++..+............++.+. + .+++.||+||++....
T Consensus 276 ~~~~~~~~i~~~~~t~~~~~p~l~~~l~~~~~~~~~~~~~l~~~~g~~l~~~~~~~~~~~~~~~~l~~~YG~tE~~~~~~ 355 (600)
T PRK08279 276 SASRFWDDVRRYRATAFQYIGELCRYLLNQPPKPTDRDHRLRLMIGNGLRPDIWDEFQQRFGIPRILEFYAASEGNVGFI 355 (600)
T ss_pred CHHHHHHHHHHhcceEEeehHHHHHHHHhCCCCccccCcceeEEecCCCCHHHHHHHHHHhCcceeeeeecccccceeec
Confidence 57788999999999999988888765443221110000011100 0 2788999999864221
Q ss_pred CCCceEEEEeeeccC--c---------------ccccCCCce---EEecC----ceE--EecC---CCcccCCCcC----
Q psy14342 142 GLGFALWVLSSVYSG--H---------------HSILIPPSE---VEVNP----ALW--LSAV---SQYRVRDTFC---- 188 (316)
Q Consensus 142 ~~~~~~~~~~~~~~g--~---------------~~~~~~g~~---~i~d~----~l~--v~~~---~gY~~~~~~~---- 188 (316)
.... ...+.| + .+.++.+.. ..+.+ +|+ ++++ .|| +++..+
T Consensus 356 ~~~~-----~~~~~g~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~g~~Gel~~~i~~~~~~~GY-~~~~~t~~~~ 429 (600)
T PRK08279 356 NVFN-----FDGTVGRVPLWLAHPYAIVKYDVDTGEPVRDADGRCIKVKPGEVGLLIGRITDRGPFDGY-TDPEASEKKI 429 (600)
T ss_pred ccCC-----CCcccccccccccccceeeeeccCcCceeeCCCCccccCCCCCceeEEEEecCccccccc-CCchhhHHHH
Confidence 1000 000001 0 000111111 11111 144 5666 899 665433
Q ss_pred -------------CCCceeeec-Cc---CCcccceeEECCcccChHhHHHHHHHhccccceeEEEeeC------CcEEEE
Q psy14342 189 -------------SCNGALYQG-AE---RLALDETIMLRGMRYHPIDIENSVMRAHKKIAECAVFTWT------NLLVVV 245 (316)
Q Consensus 189 -------------~~d~g~~~~-g~---~GR~dd~i~~~G~~v~p~eIE~~l~~~~p~v~~~~v~~~~------~~~~~~ 245 (316)
++|.|++++ |. .||.||+||++|+||+|.|||++|.+ ||+|.+|+|+++. ...+++
T Consensus 430 ~~~~~~~~~~~~~TGDlg~~~~dG~l~~~GR~~d~ik~~G~~i~p~eIE~~l~~-~p~V~~a~v~gv~~~~~~~~~~~~~ 508 (600)
T PRK08279 430 LRDVFKKGDAWFNTGDLMRDDGFGHAQFVDRLGDTFRWKGENVATTEVENALSG-FPGVEEAVVYGVEVPGTDGRAGMAA 508 (600)
T ss_pred hhcccCCCCceEeecceEEEcCCccEEEecccCCeEEECCcccCHHHHHHHHhc-CCCcceEEEEEeecCCCCCccceeE
Confidence 225555553 43 99999999999999999999999999 9999999999873 223333
Q ss_pred EEecC-CchhhcchHHHHHHHHHHhcCeeecEEEEEcCCCcccCCCchhhHHHHHHHHHcC
Q psy14342 246 VELDG-NESEALDLVPLVTNAVLEEHHLIVGVAVVVDPGVVPINSRGEKQRMHLRDGFLAD 305 (316)
Q Consensus 246 v~~~~-~~~~~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~lP~t~~gKi~r~~l~~~~~~~ 305 (316)
+.... ...+.+++.+.+++++. .+..| ..+.+++ ++|+|++||++|++|++.+.+.
T Consensus 509 vv~~~~~~~~~~~l~~~l~~~L~-~~~~P-~~i~~v~--~lP~t~~GKi~r~~L~~~~~~~ 565 (600)
T PRK08279 509 IVLADGAEFDLAALAAHLYERLP-AYAVP-LFVRLVP--ELETTGTFKYRKVDLRKEGFDP 565 (600)
T ss_pred EEecCCccCCHHHHHHHHHhhCc-cccCC-eEEEeec--CCCCCcchhhhHHHHhhcCCCc
Confidence 33332 23344678888887776 55555 4555555 8999999999999999887764
|
|
| >PRK05850 acyl-CoA synthetase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=1e-35 Score=285.18 Aligned_cols=305 Identities=18% Similarity=0.240 Sum_probs=206.2
Q ss_pred CeEEEEeccCCCCCceEEEEeHHHHHHHHHHHHHH-hc-----CCCCCceEEecCCcCChhhhHHHHhhhhcCceeeeeC
Q psy14342 1 MLAYLDFSVSTTGMLAGIKMSHAAVTSLCRSMKLA-CE-----LYPSRHIALCLDPYCGLGFALWVLSSVYSGHHSILIP 74 (316)
Q Consensus 1 ~~a~i~~TSGTTG~PK~V~~t~~~l~~~~~~~~~~-~~-----~~~~d~~l~~~p~~h~~g~~~~~~~~l~~G~~~v~~~ 74 (316)
|+++|+|||||||.||||.++|+++..++...... +. ..++++++.++|++|.+|++..++.+++.|+++++.+
T Consensus 161 d~a~i~~TSGTTG~PKgV~~sh~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~pl~h~~g~~~~~~~~l~~G~~~~~~~ 240 (578)
T PRK05850 161 STAYLQYTSGSTRTPAGVMVSHRNVIANFEQLMSDYFGDTGGVPPPDTTVVSWLPFYHDMGLVLGVCAPILGGCPAVLTS 240 (578)
T ss_pred CeEEEEeCCCCCCCCceEEEeHHHHHHHHHHHHHhhccccccCCCCcceEEEECCCCCCchhHHHHHHHHhcCCcEEEeC
Confidence 57999999999999999999999998876655432 22 3457899999999999999888999999999999987
Q ss_pred CcccccChHHHHHHHhccceeeEEecccchhhHHhhH---Hhhh----hhcccccccc----------------------
Q psy14342 75 PSEVEVNPALWLSAVSQYRVRDTFCSYGMLAGIKMSH---AAVT----SLCRSMKLAC---------------------- 125 (316)
Q Consensus 75 ~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~~~l~~~~---~~~~----~~~~~~~ls~---------------------- 125 (316)
+..+..+|..|++.+++++++ ++..|+.+..+.... .... ...+.+-..+
T Consensus 241 ~~~~~~~p~~~~~~i~~~~~~-~~~~p~~~~~~~~~~~~~~~~~~~~~~~lr~~~~gg~~~~~~~~~~~~~~~~~~~~~~ 319 (578)
T PRK05850 241 PVAFLQRPARWMQLLASNPHA-FSAAPNFAFELAVRKTSDDDMAGLDLGGVLGIISGSERVHPATLKRFADRFAPFNLRE 319 (578)
T ss_pred HHHHHHCHHHHHHHHHHcCCe-EEeCCcHHHHHHHHhcchhhhcCcchhhheeEEECcCCCCHHHHHHHHHHHHhcCcCc
Confidence 765556899999999999998 456666543322210 0000 0001000000
Q ss_pred -cccccccchhccCCCCCCCc----e-EEEE-eeecc----------C----cccccCCCce-EEecCc-----------
Q psy14342 126 -ELYPSRHIALCLDPYCGLGF----A-LWVL-SSVYS----------G----HHSILIPPSE-VEVNPA----------- 172 (316)
Q Consensus 126 -e~~~~yG~te~~~~~~~~~~----~-~~~~-~~~~~----------g----~~~~~~~g~~-~i~d~~----------- 172 (316)
.+++.||+||++.......+ . .... ..... | ..+.+. +.+ +++|++
T Consensus 320 ~~~~~~YG~tE~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~g~~~~~~g~p~-~~~~~ivd~~~~~~~~~g~~G 398 (578)
T PRK05850 320 TAIRPSYGLAEATVYVATREPGQPPESVRFDYEKLSAGHAKRCETGGGTPLVSYGSPR-SPTVRIVDPDTCIECPAGTVG 398 (578)
T ss_pred ccccCccchhhhhhheeccCCCCCceEEEECHHHHhCCceEecCCCCCceEEeccCCC-CCEEEEEcCCCCcCCCCCCEE
Confidence 15678999997632221110 0 0000 00000 1 001122 345 666642
Q ss_pred -eEEecC---CCcccCCCcCC----------------------CCceeeecCc---CCcccceeEECCcccChHhHHHHH
Q psy14342 173 -LWLSAV---SQYRVRDTFCS----------------------CNGALYQGAE---RLALDETIMLRGMRYHPIDIENSV 223 (316)
Q Consensus 173 -l~v~~~---~gY~~~~~~~~----------------------~d~g~~~~g~---~GR~dd~i~~~G~~v~p~eIE~~l 223 (316)
||++|+ .|||++++.+. +|.|++++|. .||.||+||++|++|+|.|||++|
T Consensus 399 el~v~g~~~~~gY~~~~~~t~~~f~~~~~~~~~~~~~~~w~~TGDl~~~~~G~l~~~GR~~d~i~~~G~~i~p~eIE~~l 478 (578)
T PRK05850 399 EIWVHGDNVAAGYWQKPEETERTFGATLVDPSPGTPEGPWLRTGDLGFISEGELFIVGRIKDLLIVDGRNHYPDDIEATI 478 (578)
T ss_pred EEEEecCcccccccCChhhhHHHhhcccccccccCCCCCeeeccceeeEECCEEEEEcccccEEEECCeecCHHHHHHHH
Confidence 999999 89999876543 1445555554 999999999999999999999999
Q ss_pred HHhccccceeEEEeeC----CcEEEEEEecCCchhh-------cchHHHHHHHHHHhcCeeecEEEEEcCCCcccCCCch
Q psy14342 224 MRAHKKIAECAVFTWT----NLLVVVVELDGNESEA-------LDLVPLVTNAVLEEHHLIVGVAVVVDPGVVPINSRGE 292 (316)
Q Consensus 224 ~~~~p~v~~~~v~~~~----~~~~~~v~~~~~~~~~-------~~l~~~~~~~l~~~~~~~~~~~~~~~~~~lP~t~~gK 292 (316)
.+ ||.+ +++|+++. +.+++++++....... ..+.+++...+.......+..+.++..+.||+|++||
T Consensus 479 ~~-~~~~-~~~v~~v~~~~~~~~~a~v~~~~~~~~~~~~~~~~~~l~~~v~~~l~~~~~~~~~~~~~~~~~~iP~t~~GK 556 (578)
T PRK05850 479 QE-ITGG-RVAAISVPDDGTEKLVAIIELKKRGDSDEEAMDRLRTVKREVTSAISKSHGLSVADLVLVAPGSIPITTSGK 556 (578)
T ss_pred HH-hcCC-cEEEEEecCCCceEEEEEEEeccccCcchhhhhhHHHHHHHHHHHHHHHhCCCceEEEEeCCCCcCCCCCch
Confidence 99 9986 47777773 4577777766543211 2334444444443334444567787777899999999
Q ss_pred hhHHHHHHHHHcCCCCc
Q psy14342 293 KQRMHLRDGFLADQLDP 309 (316)
Q Consensus 293 i~r~~l~~~~~~~~~~~ 309 (316)
++|++|+++|.++++..
T Consensus 557 i~R~~l~~~~~~~~~~~ 573 (578)
T PRK05850 557 IRRAACVEQYRQDEFTR 573 (578)
T ss_pred HHHHHHHHHHHcCCccc
Confidence 99999999999877554
|
|
| >PRK10946 entE enterobactin synthase subunit E; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.5e-36 Score=284.62 Aligned_cols=290 Identities=16% Similarity=0.143 Sum_probs=212.9
Q ss_pred CeEEEEeccCCCCCceEEEEeHHHHHHHHHHHHHHhcCCCCCceEEecCCcCChhhhH-HHHhhhhcCceeeeeCCcccc
Q psy14342 1 MLAYLDFSVSTTGMLAGIKMSHAAVTSLCRSMKLACELYPSRHIALCLDPYCGLGFAL-WVLSSVYSGHHSILIPPSEVE 79 (316)
Q Consensus 1 ~~a~i~~TSGTTG~PK~V~~t~~~l~~~~~~~~~~~~~~~~d~~l~~~p~~h~~g~~~-~~~~~l~~G~~~v~~~~~~~~ 79 (316)
|+++|+|||||||.||+|.+||+++...+......++++++|+++.++|++|.+++.. .++.++..|+++++.+..
T Consensus 183 ~~a~i~~TSGTTG~PKgV~~s~~~l~~~~~~~~~~~~~~~~~~~l~~~p~~h~~~~~~~~~~~~l~~g~~~~~~~~~--- 259 (536)
T PRK10946 183 EVAFFQLSGGSTGTPKLIPRTHNDYYYSVRRSVEICGFTPQTRYLCALPAAHNYPMSSPGALGVFLAGGTVVLAPDP--- 259 (536)
T ss_pred CeEEEEeCCCCCCCCcEEEEehHHHHHHHHHHHHhcCCCCCceEEEecCccccccchhhhHHHHhhcCcEEEECCCC---
Confidence 5799999999999999999999999999888888899999999999999999988764 478889999999886533
Q ss_pred cChHHHHHHHhccceeeEEecccchhhHHhhHHhh--h---hhcccccccc-----------------cccccccchhcc
Q psy14342 80 VNPALWLSAVSQYRVRDTFCSYGMLAGIKMSHAAV--T---SLCRSMKLAC-----------------ELYPSRHIALCL 137 (316)
Q Consensus 80 ~~~~~~~~~~~~~~~t~~~~~~~~~~~l~~~~~~~--~---~~~~~~~ls~-----------------e~~~~yG~te~~ 137 (316)
++..+++.+++++++++..+|+.+..+....... . ...+.+-..+ .+++.||+||+.
T Consensus 260 -~~~~~~~~l~~~~~t~~~~~p~~~~~l~~~~~~~~~~~~~~~l~~v~~gg~~l~~~~~~~~~~~~g~~~~~~YG~tE~~ 338 (536)
T PRK10946 260 -SATLCFPLIEKHQVNVTALVPPAVSLWLQAIAEGGSRAQLASLKLLQVGGARLSETLARRIPAELGCQLQQVFGMAEGL 338 (536)
T ss_pred -CHHHHHHHHHHhCCcEEEeChHHHHHHHhhhcccCccccccceeEEEECCCCCCHHHHHHHHHhcCCeEEEeecccccc
Confidence 5778899999999999999998876554331110 0 0001111111 278899999964
Q ss_pred CCCCCCCceEEEEeeeccCcccccC-CCce-EEecCc-----------eEEecC---CCcccCCCcCCC-----------
Q psy14342 138 DPYCGLGFALWVLSSVYSGHHSILI-PPSE-VEVNPA-----------LWLSAV---SQYRVRDTFCSC----------- 190 (316)
Q Consensus 138 ~~~~~~~~~~~~~~~~~~g~~~~~~-~g~~-~i~d~~-----------l~v~~~---~gY~~~~~~~~~----------- 190 (316)
..+...... .....++.+.++ |+.. ++.|++ |+++|+ .|||++++.+..
T Consensus 339 ~~~~~~~~~----~~~~~~~~G~p~~~~~~v~i~d~~~~~~~~g~~Gel~v~g~~~~~GY~~~~~~t~~~~~~d~~~~TG 414 (536)
T PRK10946 339 VNYTRLDDS----DERIFTTQGRPMSPDDEVWVADADGNPLPQGEVGRLMTRGPYTFRGYYKSPQHNASAFDANGFYCSG 414 (536)
T ss_pred eeeecCCCc----cccccccCCcccCCCceEEEECCCCCCCCCCCccEEEEecCccchhhcCCcccchhhcccCCceecC
Confidence 322211100 001112334456 6777 676643 999999 899998766532
Q ss_pred Cceeeec-Cc---CCcccceeEECCcccChHhHHHHHHHhccccceeEEEeeC-----CcEEEEEEecCCchhhcchHHH
Q psy14342 191 NGALYQG-AE---RLALDETIMLRGMRYHPIDIENSVMRAHKKIAECAVFTWT-----NLLVVVVELDGNESEALDLVPL 261 (316)
Q Consensus 191 d~g~~~~-g~---~GR~dd~i~~~G~~v~p~eIE~~l~~~~p~v~~~~v~~~~-----~~~~~~v~~~~~~~~~~~l~~~ 261 (316)
|.|++++ |. .||.||+|+++|++|+|.|||++|.+ ||.|.+++|++.. +.+++++++... .+.+++.+.
T Consensus 415 Dl~~~d~~G~l~~~gR~~d~i~~~G~~v~~~eiE~~l~~-~~~v~~~~v~~~~~~~~g~~~~a~vv~~~~-~~~~~l~~~ 492 (536)
T PRK10946 415 DLVSIDPDGYITVVGREKDQINRGGEKIAAEEIENLLLR-HPAVIHAALVSMEDELMGEKSCAFLVVKEP-LKAVQLRRF 492 (536)
T ss_pred ceEEECCCCcEEEeccccceeecCCEEEcHHHHHHHHHh-CCCcceEEEEcCCCcccCceEEEEEEeCCC-CCHHHHHHH
Confidence 5555543 43 99999999999999999999999999 9999999999884 356666666544 444567777
Q ss_pred HHHH-HHHhcCeeecEEEEEcCCCcccCCCchhhHHHHHHHHHc
Q psy14342 262 VTNA-VLEEHHLIVGVAVVVDPGVVPINSRGEKQRMHLRDGFLA 304 (316)
Q Consensus 262 ~~~~-l~~~~~~~~~~~~~~~~~~lP~t~~gKi~r~~l~~~~~~ 304 (316)
+++. +. .+..| ..+.+++ ++|+|++||++|++|++.+..
T Consensus 493 ~~~~~l~-~~~~P-~~~~~~~--~iP~t~~GKv~r~~L~~~~~~ 532 (536)
T PRK10946 493 LREQGIA-EFKLP-DRVECVD--SLPLTAVGKVDKKQLRQWLAS 532 (536)
T ss_pred HHhCCcc-ccccC-cEEEEec--cCCCCCCCcccHHHHHHHHHh
Confidence 7654 44 44444 4555554 899999999999999988765
|
|
| >PRK08633 2-acyl-glycerophospho-ethanolamine acyltransferase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-36 Score=311.93 Aligned_cols=294 Identities=13% Similarity=0.054 Sum_probs=214.0
Q ss_pred CeEEEEeccCCCCCceEEEEeHHHHHHHHHHHHHHhcCCCCCceEEecCCcCChhhhHHHHhhhhcCceeeeeCCccccc
Q psy14342 1 MLAYLDFSVSTTGMLAGIKMSHAAVTSLCRSMKLACELYPSRHIALCLDPYCGLGFALWVLSSVYSGHHSILIPPSEVEV 80 (316)
Q Consensus 1 ~~a~i~~TSGTTG~PK~V~~t~~~l~~~~~~~~~~~~~~~~d~~l~~~p~~h~~g~~~~~~~~l~~G~~~v~~~~~~~~~ 80 (316)
|+++|+|||||||.||+|.+||+++..++......+++.++|+++..+|++|.+|+...++.++..|+++++.+.. .
T Consensus 783 ~~a~i~~TSGTTG~PKgv~~s~~~~~~~~~~~~~~~~~~~~d~~l~~~p~~h~~g~~~~~~~~l~~g~~~v~~~~~---~ 859 (1146)
T PRK08633 783 DTATIIFSSGSEGEPKGVMLSHHNILSNIEQISDVFNLRNDDVILSSLPFFHSFGLTVTLWLPLLEGIKVVYHPDP---T 859 (1146)
T ss_pred CEEEEEECCCCCCCCceEEechHHHHHHHHHHHHhcCCCCCCEEEEcCcHHHHHhHHHHHHHHHHCCCEEEEeCCC---C
Confidence 6899999999999999999999999998888888899999999999999999999988788999999999886532 2
Q ss_pred ChHHHHHHHhccceeeEEecccchhhHHhhHHhhh---hhcccccccc-----------------cccccccchhccCCC
Q psy14342 81 NPALWLSAVSQYRVRDTFCSYGMLAGIKMSHAAVT---SLCRSMKLAC-----------------ELYPSRHIALCLDPY 140 (316)
Q Consensus 81 ~~~~~~~~~~~~~~t~~~~~~~~~~~l~~~~~~~~---~~~~~~~ls~-----------------e~~~~yG~te~~~~~ 140 (316)
++..+++.++++++|++..+|+++..+.......+ ...+.+-.++ ++++.||+||++...
T Consensus 860 ~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~lr~~~~gg~~~~~~~~~~~~~~~g~~~~~~YG~tE~~~~~ 939 (1146)
T PRK08633 860 DALGIAKLVAKHRATILLGTPTFLRLYLRNKKLHPLMFASLRLVVAGAEKLKPEVADAFEEKFGIRILEGYGATETSPVA 939 (1146)
T ss_pred CHHHHHHHHHHcCCeEEEecHHHHHHHHhccccCcccCCCeeeEEEcCCcCCHHHHHHHHHHhCCCeecccccccCcceE
Confidence 67899999999999999999998875544221100 0011111111 388899999986543
Q ss_pred CCCCceE-----EEEeeeccCcccccCCCce-EEecCc------------eEEecC---CCcccCCCcCCC---------
Q psy14342 141 CGLGFAL-----WVLSSVYSGHHSILIPPSE-VEVNPA------------LWLSAV---SQYRVRDTFCSC--------- 190 (316)
Q Consensus 141 ~~~~~~~-----~~~~~~~~g~~~~~~~g~~-~i~d~~------------l~v~~~---~gY~~~~~~~~~--------- 190 (316)
....+.. +.......++.|.|+||.+ +++|++ |+++|+ .|||++++.+.+
T Consensus 940 ~~~~~~~~~~~~~~~~~~~~~~vG~p~~~~~v~i~d~~~~~~~~~g~~Gel~v~g~~~~~gY~~~~~~t~~~~~~~~~~~ 1019 (1146)
T PRK08633 940 SVNLPDVLAADFKRQTGSKEGSVGMPLPGVAVRIVDPETFEELPPGEDGLILIGGPQVMKGYLGDPEKTAEVIKDIDGIG 1019 (1146)
T ss_pred EEecCcccccccccccCCCCCCccccCCCCEEEEEcCCCCccCCCCCceEEEEcCCCccccccCCccchHHHhhcCCCCC
Confidence 2221110 0001112345566899999 888852 999999 899998876532
Q ss_pred -----Cceeeec-Cc---CCcccceeEECCcccChHhHHHHHHHhcc--ccceeEEEeeC-----CcEEEEEEecCCchh
Q psy14342 191 -----NGALYQG-AE---RLALDETIMLRGMRYHPIDIENSVMRAHK--KIAECAVFTWT-----NLLVVVVELDGNESE 254 (316)
Q Consensus 191 -----d~g~~~~-g~---~GR~dd~i~~~G~~v~p~eIE~~l~~~~p--~v~~~~v~~~~-----~~~~~~v~~~~~~~~ 254 (316)
|.|++++ |. .||.||+||++|++|+|.|||++|.+ || .+.+++|++.. +.++++++.. ..+
T Consensus 1020 ~~~TGD~~~~~~~g~l~~~gR~~d~i~~~G~~v~~~eiE~~l~~-~~~~~~~~~~v~~~~~~~~g~~~~~~v~~~--~~~ 1096 (1146)
T PRK08633 1020 WYVTGDKGHLDEDGFLTITDRYSRFAKIGGEMVPLGAVEEELAK-ALGGEEVVFAVTAVPDEKKGEKLVVLHTCG--AED 1096 (1146)
T ss_pred eEECCCEEEEcCCceEEEEecccchhhhCcEEECHHHHHHHHHh-ccCCCCceEEEEeccCCCCCcEEEEEEecC--ccC
Confidence 4444443 32 89999999999999999999999999 99 45678888873 3566665542 223
Q ss_pred hcchHHHHHHHHHHhcCeeecEEEEEcCCCcccCCCchhhHHHHHHHHH
Q psy14342 255 ALDLVPLVTNAVLEEHHLIVGVAVVVDPGVVPINSRGEKQRMHLRDGFL 303 (316)
Q Consensus 255 ~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~lP~t~~gKi~r~~l~~~~~ 303 (316)
.+++.+.+++.....+..| ..+.+++ ++|+|++||++|++|++...
T Consensus 1097 ~~~l~~~~~~~~l~~~~~P-~~i~~~~--~iP~t~~GKi~r~~L~~~~~ 1142 (1146)
T PRK08633 1097 VEELKRAIKESGLPNLWKP-SRYFKVE--ALPLLGSGKLDLKGLKELAL 1142 (1146)
T ss_pred HHHHHHHHHhcCCCcccCC-cEEEEec--CcCCCCCCCCcHHHHHHHHH
Confidence 3456665554322244444 3455555 89999999999999998644
|
|
| >PRK05605 long-chain-fatty-acid--CoA ligase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=4e-36 Score=287.74 Aligned_cols=291 Identities=17% Similarity=0.174 Sum_probs=214.1
Q ss_pred CeEEEEeccCCCCCceEEEEeHHHHHHHHHHHHHHhc-CC-CCCceEEecCCcCChhhhHHHHhhhhcCceeeeeCCccc
Q psy14342 1 MLAYLDFSVSTTGMLAGIKMSHAAVTSLCRSMKLACE-LY-PSRHIALCLDPYCGLGFALWVLSSVYSGHHSILIPPSEV 78 (316)
Q Consensus 1 ~~a~i~~TSGTTG~PK~V~~t~~~l~~~~~~~~~~~~-~~-~~d~~l~~~p~~h~~g~~~~~~~~l~~G~~~v~~~~~~~ 78 (316)
++++|+|||||||.||+|.+||+++..++......+. +. .+|+++.++|++|.+|+...++.++..|+++++.++.
T Consensus 220 ~~a~i~~TSGTTG~PK~v~~s~~~l~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~g~~~~~~~~l~~g~~~~~~~~~-- 297 (573)
T PRK05605 220 DVALILYTSGTTGKPKGAQLTHRNLFANAAQGKAWVPGLGDGPERVLAALPMFHAYGLTLCLTLAVSIGGELVLLPAP-- 297 (573)
T ss_pred CEEEEEcCCCCCCCCcEEEEecHHHHHHHHHHHhhccccCCCCcEEEEecChHHHHHHHHHHHHHHHcCCEEEEeCCC--
Confidence 5789999999999999999999999887665444433 33 4688999999999999988788889999999987643
Q ss_pred ccChHHHHHHHhccceeeEEecccchhhHHhhHHhhh---hhcccccccc-----------------cccccccchhccC
Q psy14342 79 EVNPALWLSAVSQYRVRDTFCSYGMLAGIKMSHAAVT---SLCRSMKLAC-----------------ELYPSRHIALCLD 138 (316)
Q Consensus 79 ~~~~~~~~~~~~~~~~t~~~~~~~~~~~l~~~~~~~~---~~~~~~~ls~-----------------e~~~~yG~te~~~ 138 (316)
++..+++.+++++++++..+|..+..+........ ...+.+-.++ .+++.||+||++.
T Consensus 298 --~~~~~~~~l~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~lr~i~~gg~~l~~~~~~~~~~~~~~~i~~~YG~TE~~~ 375 (573)
T PRK05605 298 --DIDLILDAMKKHPPTWLPGVPPLYEKIAEAAEERGVDLSGVRNAFSGAMALPVSTVELWEKLTGGLLVEGYGLTETSP 375 (573)
T ss_pred --CHHHHHHHHHHhCCEEEEchHHHHHHHHhCccccCCCchhccEEEECCCcCCHHHHHHHHHHhCCCeecccccchhch
Confidence 68899999999999999999998876554322110 0011111111 2888999999875
Q ss_pred CCCCCCceEEEEeeeccCcccccCCCce-EEecCc-------------eEEecC---CCcccCCCcCC----------CC
Q psy14342 139 PYCGLGFALWVLSSVYSGHHSILIPPSE-VEVNPA-------------LWLSAV---SQYRVRDTFCS----------CN 191 (316)
Q Consensus 139 ~~~~~~~~~~~~~~~~~g~~~~~~~g~~-~i~d~~-------------l~v~~~---~gY~~~~~~~~----------~d 191 (316)
........ .....++.|.++||.. +++|++ |+++|+ .||+++++.+. +|
T Consensus 376 ~~~~~~~~----~~~~~~~~G~~~~~~~~~i~d~~~~~~~~~~g~~Gel~v~~~~~~~gy~~~~~~~~~~~~~g~~~TGD 451 (573)
T PRK05605 376 IIVGNPMS----DDRRPGYVGVPFPDTEVRIVDPEDPDETMPDGEEGELLVRGPQVFKGYWNRPEETAKSFLDGWFRTGD 451 (573)
T ss_pred hhhcCCcc----cCCcCCccccCCCCCEEEEEcCCCCCccCCCCCeeEEEEecCchhhhhcCChhHhhhcccCCCcccCC
Confidence 43322210 1112234556899988 777631 899998 89999865543 36
Q ss_pred ceeeec-Cc---CCcccceeEECCcccChHhHHHHHHHhccccceeEEEeeC-----CcEEEEEEecCCc-hhhcchHHH
Q psy14342 192 GALYQG-AE---RLALDETIMLRGMRYHPIDIENSVMRAHKKIAECAVFTWT-----NLLVVVVELDGNE-SEALDLVPL 261 (316)
Q Consensus 192 ~g~~~~-g~---~GR~dd~i~~~G~~v~p~eIE~~l~~~~p~v~~~~v~~~~-----~~~~~~v~~~~~~-~~~~~l~~~ 261 (316)
.|++++ |. .||.||+||++|++|+|.|||++|.. |+.|.+++|++.. +.+++++++.+.. .+.+++.+.
T Consensus 452 ~~~~~~~g~l~i~gR~dd~i~~~G~~v~p~eIE~~l~~-~~~i~~~~v~~~~~~~~~~~~~~~vv~~~~~~~~~~~l~~~ 530 (573)
T PRK05605 452 VVVMEEDGFIRIVDRIKELIITGGFNVYPAEVEEVLRE-HPGVEDAAVVGLPREDGSEEVVAAVVLEPGAALDPEGLRAY 530 (573)
T ss_pred EEEEcCCCcEEEEeccccceeeCCEEECHHHHHHHHHh-CcccceEEEEeeecccCCeEEEEEEEECCCCCCCHHHHHHH
Confidence 666654 33 99999999999999999999999999 9999999999873 4667766665432 234567777
Q ss_pred HHHHHHHhcCeeecEEEEEcCCCcccCCCchhhHHHHHHHHHc
Q psy14342 262 VTNAVLEEHHLIVGVAVVVDPGVVPINSRGEKQRMHLRDGFLA 304 (316)
Q Consensus 262 ~~~~l~~~~~~~~~~~~~~~~~~lP~t~~gKi~r~~l~~~~~~ 304 (316)
+++.+. .+..| ..+.+++ ++|+|++||++|++|++.+.+
T Consensus 531 ~~~~l~-~~~~p-~~i~~~~--~iP~t~~GKi~r~~L~~~~~~ 569 (573)
T PRK05605 531 CREHLT-RYKVP-RRFYHVD--ELPRDQLGKVRRREVREELLE 569 (573)
T ss_pred HHHhCc-cccCC-cEEEEec--cCCCCCcccccHHHHHHHHHH
Confidence 776666 44444 3455554 899999999999999998864
|
|
| >PRK09088 acyl-CoA synthetase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.3e-36 Score=281.00 Aligned_cols=294 Identities=14% Similarity=0.135 Sum_probs=215.7
Q ss_pred CeEEEEeccCCCCCceEEEEeHHHHHHHHHHHHHHhcCCCCCceEEecCCcCChhhhHHHHhhhhcCceeeeeCCccccc
Q psy14342 1 MLAYLDFSVSTTGMLAGIKMSHAAVTSLCRSMKLACELYPSRHIALCLDPYCGLGFALWVLSSVYSGHHSILIPPSEVEV 80 (316)
Q Consensus 1 ~~a~i~~TSGTTG~PK~V~~t~~~l~~~~~~~~~~~~~~~~d~~l~~~p~~h~~g~~~~~~~~l~~G~~~v~~~~~~~~~ 80 (316)
++++++|||||||.||+|.++|+++...+..+...+.+.++|++++.+|++|.+|++..++.++..|+++++.+..
T Consensus 136 ~~~~i~~TSGTTG~PK~v~~s~~~l~~~~~~~~~~~~~~~~d~~l~~~pl~~~~g~~~~~~~~l~~g~~~~~~~~~---- 211 (488)
T PRK09088 136 RVSLILFTSGTSGQPKGVMLSERNLQQTAHNFGVLGRVDAHSSFLCDAPMFHIIGLITSVRPVLAVGGSILVSNGF---- 211 (488)
T ss_pred CceEEEeCCCCCCCCcEEEEehHHHHHHHHHHHHhhCCCCCcEEEEecchHHHHHHHHHHHHHHhcCCEEEEcCCC----
Confidence 4789999999999999999999999888777777778888999999999999999988788889999998886532
Q ss_pred ChHHHHHHHh--ccceeeEEecccchhhHHhhHHhhh---hhcccccccc----------------cccccccchhccCC
Q psy14342 81 NPALWLSAVS--QYRVRDTFCSYGMLAGIKMSHAAVT---SLCRSMKLAC----------------ELYPSRHIALCLDP 139 (316)
Q Consensus 81 ~~~~~~~~~~--~~~~t~~~~~~~~~~~l~~~~~~~~---~~~~~~~ls~----------------e~~~~yG~te~~~~ 139 (316)
.+..++..+. ++++++++.+|.++..+........ ...+.+-.++ .+++.||+||++..
T Consensus 212 ~~~~~~~~~~~~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~l~~~~~gG~~~~~~~~~~~~~~g~~v~~~YG~TE~~~~ 291 (488)
T PRK09088 212 EPKRTLGRLGDPALGITHYFCVPQMAQAFRAQPGFDAAALRHLTALFTGGAPHAAEDILGWLDDGIPMVDGFGMSEAGTV 291 (488)
T ss_pred CHHHHHHHHHhhccCCcEEeeHHHHHHHHHhCcCcCccccccceEEEecCCCCCHHHHHHHHHhCCceeeeecccccccc
Confidence 4667777775 4889988888888765543221100 0011111111 38889999999753
Q ss_pred CCCCCceEEEEeeeccCcccccCCCce-EEecCc-----------eEEecC---CCcccCCCcCC-----------CCce
Q psy14342 140 YCGLGFALWVLSSVYSGHHSILIPPSE-VEVNPA-----------LWLSAV---SQYRVRDTFCS-----------CNGA 193 (316)
Q Consensus 140 ~~~~~~~~~~~~~~~~g~~~~~~~g~~-~i~d~~-----------l~v~~~---~gY~~~~~~~~-----------~d~g 193 (316)
........ ......++.+.++||++ ++.|++ |+++|+ .|||++++.+. +|.|
T Consensus 292 ~~~~~~~~--~~~~~~~~vG~~~~~~~~~i~d~~~~~~~~g~~Gel~v~~~~~~~gY~~~~~~~~~~~~~~g~~~TGDl~ 369 (488)
T PRK09088 292 FGMSVDCD--VIRAKAGAAGIPTPTVQTRVVDDQGNDCPAGVPGELLLRGPNLSPGYWRRPQATARAFTGDGWFRTGDIA 369 (488)
T ss_pred cccCCCcc--cccccCCccccCCCCcEEEEECCCCCCCcCCCceEEEEECCccchhhcCChhhhhhhhcCCCCeeecceE
Confidence 22111000 00112345556899999 887642 999999 89999876542 2666
Q ss_pred eeec-Cc---CCcccceeEECCcccChHhHHHHHHHhccccceeEEEeeC-----CcEEEEEEecCCch-hhcchHHHHH
Q psy14342 194 LYQG-AE---RLALDETIMLRGMRYHPIDIENSVMRAHKKIAECAVFTWT-----NLLVVVVELDGNES-EALDLVPLVT 263 (316)
Q Consensus 194 ~~~~-g~---~GR~dd~i~~~G~~v~p~eIE~~l~~~~p~v~~~~v~~~~-----~~~~~~v~~~~~~~-~~~~l~~~~~ 263 (316)
++++ |. .||.||+|+.+|++|+|.|||++|.+ ||.|.+++|++.. +..++++++.+... +.+++.+.++
T Consensus 370 ~~~~~g~l~i~GR~~d~i~~~G~~i~~~~iE~~l~~-~~~v~~~~v~~~~~~~~g~~~~~~v~~~~~~~~~~~~l~~~~~ 448 (488)
T PRK09088 370 RRDADGFFWVVDRKKDMFISGGENVYPAEIEAVLAD-HPGIRECAVVGMADAQWGEVGYLAIVPADGAPLDLERIRSHLS 448 (488)
T ss_pred EEcCCCcEEEeccccceEEeCCEEECHHHHHHHHHh-CCCcceEEEEeCCCccCCceeEEEEEECCCCCCCHHHHHHHHH
Confidence 6654 43 99999999999999999999999999 9999999999874 34566666554322 3456777787
Q ss_pred HHHHHhcCeeecEEEEEcCCCcccCCCchhhHHHHHHHHHcC
Q psy14342 264 NAVLEEHHLIVGVAVVVDPGVVPINSRGEKQRMHLRDGFLAD 305 (316)
Q Consensus 264 ~~l~~~~~~~~~~~~~~~~~~lP~t~~gKi~r~~l~~~~~~~ 305 (316)
+.+. .+..| ..+.+++ +||+|++||++|++|++.+.++
T Consensus 449 ~~l~-~~~~p-~~i~~~~--~iP~t~~gKi~r~~l~~~~~~~ 486 (488)
T PRK09088 449 TRLA-KYKVP-KHLRLVD--ALPRTASGKLQKARLRDALAAG 486 (488)
T ss_pred hhCc-CCCCC-CEEEEcc--cCCCCCCCceeHHHHHHHHHhc
Confidence 7776 45554 4555554 8999999999999999998764
|
|
| >PRK08316 acyl-CoA synthetase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.5e-36 Score=283.03 Aligned_cols=292 Identities=15% Similarity=0.143 Sum_probs=220.0
Q ss_pred CeEEEEeccCCCCCceEEEEeHHHHHHHHHHHHHHhcCCCCCceEEecCCcCChhhhHHHHhhhhcCceeeeeCCccccc
Q psy14342 1 MLAYLDFSVSTTGMLAGIKMSHAAVTSLCRSMKLACELYPSRHIALCLDPYCGLGFALWVLSSVYSGHHSILIPPSEVEV 80 (316)
Q Consensus 1 ~~a~i~~TSGTTG~PK~V~~t~~~l~~~~~~~~~~~~~~~~d~~l~~~p~~h~~g~~~~~~~~l~~G~~~v~~~~~~~~~ 80 (316)
++++|+|||||||.||+|.+||+++..+.......+++.++|+++.++|++|.+|+...++..+..|+++++.+..
T Consensus 172 ~~a~i~~TSGtTG~PK~v~~s~~~l~~~~~~~~~~~~~~~~~~~~~~~p~~h~~g~~~~~~~~~~~G~~~~~~~~~---- 247 (523)
T PRK08316 172 DLAQILYTSGTESLPKGAMLTHRALIAEYVSCIVAGDMSADDIPLHALPLYHCAQLDVFLGPYLYVGATNVILDAP---- 247 (523)
T ss_pred CeEEEEeCCCCCCCCcEEEEecHHHHHHHHHHHHHhCCCCCceEEEccCCchhhhHHHHHHHHHhcCceEEEecCC----
Confidence 4789999999999999999999999988888888889999999999999999999877667788999999997643
Q ss_pred ChHHHHHHHhccceeeEEecccchhhHHhhHHhhh---hhcccccccc------------------cccccccchhccCC
Q psy14342 81 NPALWLSAVSQYRVRDTFCSYGMLAGIKMSHAAVT---SLCRSMKLAC------------------ELYPSRHIALCLDP 139 (316)
Q Consensus 81 ~~~~~~~~~~~~~~t~~~~~~~~~~~l~~~~~~~~---~~~~~~~ls~------------------e~~~~yG~te~~~~ 139 (316)
++..+++.+++++++++..+|..+..+........ ...+.+..++ .+++.||+||++..
T Consensus 248 ~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~l~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~YG~tE~~~~ 327 (523)
T PRK08316 248 DPELILRTIEAERITSFFAPPTVWISLLRHPDFDTRDLSSLRKGYYGASIMPVEVLKELRERLPGLRFYNCYGQTEIAPL 327 (523)
T ss_pred CHHHHHHHHHHhCCeEEEeCHHHHHHHHcCcccccCCcccceEEEEcCCcCCHHHHHHHHHHcCCCceeeeecccccCcc
Confidence 68899999999999999998988765543322110 0011111111 38889999998754
Q ss_pred CCCCCceEEEEeeeccCcccccCCCce-EEecCc-----------eEEecC---CCcccCCCcC----------CCCcee
Q psy14342 140 YCGLGFALWVLSSVYSGHHSILIPPSE-VEVNPA-----------LWLSAV---SQYRVRDTFC----------SCNGAL 194 (316)
Q Consensus 140 ~~~~~~~~~~~~~~~~g~~~~~~~g~~-~i~d~~-----------l~v~~~---~gY~~~~~~~----------~~d~g~ 194 (316)
.....+.. .....++.|.++++.+ ++.|++ |+++|+ .||+++++.+ ++|.|+
T Consensus 328 ~~~~~~~~---~~~~~~~~G~~~~~~~~~i~~~~~~~~~~g~~Gei~v~~~~~~~~y~~~~~~~~~~~~~~~~~TGDl~~ 404 (523)
T PRK08316 328 ATVLGPEE---HLRRPGSAGRPVLNVETRVVDDDGNDVAPGEVGEIVHRSPQLMLGYWDDPEKTAEAFRGGWFHSGDLGV 404 (523)
T ss_pred ccccCccc---cccccCCcccCCCCcEEEEEcCCCCCCCCCCcceEEEECCchhhhhcCCHHHHHHHhhCCCeeccceEE
Confidence 33222110 1111234456889998 787743 899998 8999886543 336777
Q ss_pred eec-Cc---CCcccceeEECCcccChHhHHHHHHHhccccceeEEEeeC-----CcEEEEEEecCCc-hhhcchHHHHHH
Q psy14342 195 YQG-AE---RLALDETIMLRGMRYHPIDIENSVMRAHKKIAECAVFTWT-----NLLVVVVELDGNE-SEALDLVPLVTN 264 (316)
Q Consensus 195 ~~~-g~---~GR~dd~i~~~G~~v~p~eIE~~l~~~~p~v~~~~v~~~~-----~~~~~~v~~~~~~-~~~~~l~~~~~~ 264 (316)
+++ |. .||.||+|+++|++|+|.+||+.|.+ +|.|.+++|++.. +.++++++..+.. .+.+++.+.+++
T Consensus 405 ~~~~g~l~i~gR~~~~i~~~G~~i~~~~iE~~l~~-~~~v~~~~v~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~~ 483 (523)
T PRK08316 405 MDEEGYITVVDRKKDMIKTGGENVASREVEEALYT-HPAVAEVAVIGLPDPKWIEAVTAVVVPKAGATVTEDELIAHCRA 483 (523)
T ss_pred EcCCceEEEecccccEEEeCCeEECHHHHHHHHHh-CCChheEeEecccCcccCCeEEEEEEECCCCCCCHHHHHHHHHH
Confidence 754 33 99999999999999999999999999 9999999999873 4577777766543 233567777777
Q ss_pred HHHHhcCeeecEEEEEcCCCcccCCCchhhHHHHHHHHHc
Q psy14342 265 AVLEEHHLIVGVAVVVDPGVVPINSRGEKQRMHLRDGFLA 304 (316)
Q Consensus 265 ~l~~~~~~~~~~~~~~~~~~lP~t~~gKi~r~~l~~~~~~ 304 (316)
.+. .+..| ..+.++ +++|+|++||++|++|++.|.+
T Consensus 484 ~l~-~~~~p-~~i~~v--~~~p~t~~gKi~r~~l~~~~~~ 519 (523)
T PRK08316 484 RLA-GFKVP-KRVIFV--DELPRNPSGKILKRELRERYAG 519 (523)
T ss_pred hcc-cCCCC-cEEEEe--cCCCCCCccceeHHHHHHHHHh
Confidence 766 45454 345555 4899999999999999999875
|
|
| >PTZ00342 acyl-CoA synthetase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-36 Score=295.36 Aligned_cols=299 Identities=11% Similarity=0.054 Sum_probs=207.7
Q ss_pred CeEEEEeccCCCCCceEEEEeHHHHHHHHHHHHHHh--cCCCCCceEEecCCcCChhhhHHHHhhhhcCceeeeeCCccc
Q psy14342 1 MLAYLDFSVSTTGMLAGIKMSHAAVTSLCRSMKLAC--ELYPSRHIALCLDPYCGLGFALWVLSSVYSGHHSILIPPSEV 78 (316)
Q Consensus 1 ~~a~i~~TSGTTG~PK~V~~t~~~l~~~~~~~~~~~--~~~~~d~~l~~~p~~h~~g~~~~~~~~l~~G~~~v~~~~~~~ 78 (316)
|+|+|+|||||||.||||++||+|+.+.+....... ...+.|++++++|++|+++++. .+.+++.|+++++.+.
T Consensus 305 d~a~IiYTSGTTG~PKGVmlTH~nl~~~~~~~~~~~~~~~~~~d~~ls~LPL~Hi~~~~~-~~~~l~~G~~i~~~~~--- 380 (746)
T PTZ00342 305 FITSIVYTSGTSGKPKGVMLSNKNLYNTVVPLCKHSIFKKYNPKTHLSYLPISHIYERVI-AYLSFMLGGTINIWSK--- 380 (746)
T ss_pred ceEEEEEcCCCCCCCCEEEEccHHHHHHHHHHhhcccccCCCCCeEEEeCcHHHHHHHHH-HHHHHHcCCEEEEeCC---
Confidence 589999999999999999999999998876654432 1235589999999999999976 6778999999998742
Q ss_pred ccChHHHHHHHhccceeeEEecccchhhHHhhHH-------hhhh----------------------------------h
Q psy14342 79 EVNPALWLSAVSQYRVRDTFCSYGMLAGIKMSHA-------AVTS----------------------------------L 117 (316)
Q Consensus 79 ~~~~~~~~~~~~~~~~t~~~~~~~~~~~l~~~~~-------~~~~----------------------------------~ 117 (316)
+|..+++.++++++|+++.+|.++..+..... .... .
T Consensus 381 --~~~~l~~di~~~~pT~~~~VP~v~~~i~~~i~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~v~~kir~~ 458 (746)
T PTZ00342 381 --DINYFSKDIYNSKGNILAGVPKVFNRIYTNIMTEINNLPPLKRFLVKKILSLRKSNNNGGFSKFLEGITHISSKIKDK 458 (746)
T ss_pred --CHHHHHHHHHHhCCcEEEchHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHhhcCCcchHHHHHHHHHHHHHHh
Confidence 57889999999999999999988865533100 0000 0
Q ss_pred -ccccc--ccc------------------cccccccchhccCCCCCCCceEEEEeeeccCcccccC-CCce-EEec----
Q psy14342 118 -CRSMK--LAC------------------ELYPSRHIALCLDPYCGLGFALWVLSSVYSGHHSILI-PPSE-VEVN---- 170 (316)
Q Consensus 118 -~~~~~--ls~------------------e~~~~yG~te~~~~~~~~~~~~~~~~~~~~g~~~~~~-~g~~-~i~d---- 170 (316)
...+. +++ .+.+.||+||++.......+. ....|..|.|+ ||++ +++|
T Consensus 459 lg~~lr~~~sGGapl~~~~~~~~~~~~g~~i~~gYGlTEt~~~~~~~~~~-----~~~~gsvG~p~~pg~e~ki~d~~~~ 533 (746)
T PTZ00342 459 VNPNLEVILNGGGKLSPKIAEELSVLLNVNYYQGYGLTETTGPIFVQHAD-----DNNTESIGGPISPNTKYKVRTWETY 533 (746)
T ss_pred hCCCeEEEEEcCCCCCHHHHHHHHHhcCCCEEEeeccCcccceeeeccCC-----CCCcccccCcCCCcEEEEEeccccc
Confidence 00111 111 177899999987544333221 12234445577 9999 8875
Q ss_pred --------CceEEecC---CCcccCCCcCCC-----------Cceeeec-Cc---CCcccceeEE-CCcccChHhHHHHH
Q psy14342 171 --------PALWLSAV---SQYRVRDTFCSC-----------NGALYQG-AE---RLALDETIML-RGMRYHPIDIENSV 223 (316)
Q Consensus 171 --------~~l~v~~~---~gY~~~~~~~~~-----------d~g~~~~-g~---~GR~dd~i~~-~G~~v~p~eIE~~l 223 (316)
++|+++|| .|||++++.|++ |.|.+++ |. +||.||+||+ +|++|+|.+||++|
T Consensus 534 ~~~~~~~~GEl~vrGp~v~~GY~~~pe~T~~~f~~dGW~~TGDig~~d~dG~l~i~gR~kdlIkls~Ge~I~p~eIE~~l 613 (746)
T PTZ00342 534 KATDTLPKGELLIKSDSIFSGYFLEKEQTKNAFTEDGYFKTGDIVQINKNGSLTFLDRSKGLVKLSQGEYIETDMLNNLY 613 (746)
T ss_pred ccCCCCCceEEEEecCcccccccCChhhhhhhcCcCCcccCCcEEEECCCCeEEEEccCCCeEEeCCCEEEchHHHHHHH
Confidence 13999999 899999887754 3344432 32 9999999995 79999999999999
Q ss_pred HHhccccceeEEEeeCC--cEEEEEEecCCc------------------hhh-----------cchHHHHHHHHHHh---
Q psy14342 224 MRAHKKIAECAVFTWTN--LLVVVVELDGNE------------------SEA-----------LDLVPLVTNAVLEE--- 269 (316)
Q Consensus 224 ~~~~p~v~~~~v~~~~~--~~~~~v~~~~~~------------------~~~-----------~~l~~~~~~~l~~~--- 269 (316)
.+ ||.|.+|+|+|... .+++++.+.+.. .+. .++.+.+.+.+.+.
T Consensus 614 ~~-~p~V~~~~VvG~~~~~~~~Alvv~d~~~~~~~a~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~ 692 (746)
T PTZ00342 614 SQ-ISFINFCVVYGDDSMDGPLAIISVDKYLLFKCLKDDNMLESTGINEKNYLEKLTDETINNNIYVDYVKGKMLEVYKK 692 (746)
T ss_pred hc-CCCccEEEEEccCCccccEEEEECCHHHHHHHHHhcCCccccccCcccHHHHhhhhhhccHHHHHHHHHHHHHHHHH
Confidence 99 99999999999753 577777665310 000 01234444333322
Q ss_pred -----cCeeecEEEEEcC----CCcccCCCchhhHHHHHHHHHc--CCCCcchhh
Q psy14342 270 -----HHLIVGVAVVVDP----GVVPINSRGEKQRMHLRDGFLA--DQLDPIYVA 313 (316)
Q Consensus 270 -----~~~~~~~~~~~~~----~~lP~t~~gKi~r~~l~~~~~~--~~~~~~~~~ 313 (316)
+... ..+.++.. +. -+|++.|++|+.+.+.|+. +.++.+|+.
T Consensus 693 ~~l~~~e~i-~~~~l~~~~~t~~~-~lTpt~KlkR~~v~~~y~~~i~~i~~~y~~ 745 (746)
T PTZ00342 693 TNLNRYNII-NDIYLTSKVWDTNN-YLTPTFKVKRFYVFKDYAFFIDQVKKIYKN 745 (746)
T ss_pred hCCccceee-eeEEEecCCCCCCC-ccChhhhhhHHHHHHHHHHHHHHHHHHhcC
Confidence 1222 33444431 22 3899999999999999884 256667754
|
|
| >PRK06188 acyl-CoA synthetase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.1e-36 Score=284.04 Aligned_cols=297 Identities=16% Similarity=0.126 Sum_probs=219.8
Q ss_pred CeEEEEeccCCCCCceEEEEeHHHHHHHHHHHHHHhcCCCCCceEEecCCcCChhhhHHHHhhhhcCceeeeeCCccccc
Q psy14342 1 MLAYLDFSVSTTGMLAGIKMSHAAVTSLCRSMKLACELYPSRHIALCLDPYCGLGFALWVLSSVYSGHHSILIPPSEVEV 80 (316)
Q Consensus 1 ~~a~i~~TSGTTG~PK~V~~t~~~l~~~~~~~~~~~~~~~~d~~l~~~p~~h~~g~~~~~~~~l~~G~~~v~~~~~~~~~ 80 (316)
|+++|+|||||||.||+|.++|.++...+......+++.++|+++.++|++|..|+. ++.+++.|+++++.++.
T Consensus 169 ~~a~i~~TSGtTG~pk~v~~s~~~l~~~~~~~~~~~~~~~~~~~l~~~pl~~~~g~~--~~~~l~~G~~~~~~~~~---- 242 (524)
T PRK06188 169 DIAGLAYTGGTTGKPKGVMGTHRSIATMAQIQLAEWEWPADPRFLMCTPLSHAGGAF--FLPTLLRGGTVIVLAKF---- 242 (524)
T ss_pred CeEEEEeCCCCCCCCceeeeehHHHHHHHHHHHhhcCCCcCcEEEEecCchhhhhHH--HHHHHHcCCEEEEcCCC----
Confidence 478999999999999999999999999888888889999999999999999988864 57889999999998643
Q ss_pred ChHHHHHHHhccceeeEEecccchhhHHhhHHhhhh---hcccccccc-----------------cccccccchhccCCC
Q psy14342 81 NPALWLSAVSQYRVRDTFCSYGMLAGIKMSHAAVTS---LCRSMKLAC-----------------ELYPSRHIALCLDPY 140 (316)
Q Consensus 81 ~~~~~~~~~~~~~~t~~~~~~~~~~~l~~~~~~~~~---~~~~~~ls~-----------------e~~~~yG~te~~~~~ 140 (316)
+|..+++.++++++++++.+|+.+..+......... ..+.+-.++ .+.+.||+||++...
T Consensus 243 ~~~~~~~~i~~~~~t~~~~~P~~l~~l~~~~~~~~~~l~~lr~~~~gg~~~~~~~~~~~~~~~~~~~~~~YG~tE~~~~~ 322 (524)
T PRK06188 243 DPAEVLRAIEEQRITATFLVPTMIYALLDHPDLRTRDLSSLETVYYGASPMSPVRLAEAIERFGPIFAQYYGQTEAPMVI 322 (524)
T ss_pred CHHHHHHHHHHhCCEEEEehHHHHHHHHhCcCccCCCCcceeEEEEcCCCCCHHHHHHHHHHhCchhhheeCccccCCce
Confidence 588999999999999999999988665443221100 011111111 277899999986443
Q ss_pred CCCCc-eEEEEeeeccCcccccCCCce-EEecCc-----------eEEecC---CCcccCCCcCC----------CCcee
Q psy14342 141 CGLGF-ALWVLSSVYSGHHSILIPPSE-VEVNPA-----------LWLSAV---SQYRVRDTFCS----------CNGAL 194 (316)
Q Consensus 141 ~~~~~-~~~~~~~~~~g~~~~~~~g~~-~i~d~~-----------l~v~~~---~gY~~~~~~~~----------~d~g~ 194 (316)
..... ..........++.|.++||++ .+.|++ |+++|+ .||++++..+. +|.|+
T Consensus 323 ~~~~~~~~~~~~~~~~~~~G~p~~g~~v~i~~~~~~~~~~g~~Gel~v~~~~~~~gy~~~~~~~~~~~~~g~~~TGDl~~ 402 (524)
T PRK06188 323 TYLRKRDHDPDDPKRLTSCGRPTPGLRVALLDEDGREVAQGEVGEICVRGPLVMDGYWNRPEETAEAFRDGWLHTGDVAR 402 (524)
T ss_pred eecCchhccccccccCCccccccCCcEEEEEcCCCCCCCCCCeeEEEEECcchhhhhcCChHHhhhhhcCCceeecceEE
Confidence 32221 000000111224456899999 877754 999999 89999865542 25666
Q ss_pred eec-Cc---CCcccceeEECCcccChHhHHHHHHHhccccceeEEEeeC-----CcEEEEEEecCCc-hhhcchHHHHHH
Q psy14342 195 YQG-AE---RLALDETIMLRGMRYHPIDIENSVMRAHKKIAECAVFTWT-----NLLVVVVELDGNE-SEALDLVPLVTN 264 (316)
Q Consensus 195 ~~~-g~---~GR~dd~i~~~G~~v~p~eIE~~l~~~~p~v~~~~v~~~~-----~~~~~~v~~~~~~-~~~~~l~~~~~~ 264 (316)
+++ |. .||.||+|+++|++|+|.+||++|.+ ||.|.+++|++.. +.+++++.+.+.. ...+++.+.+++
T Consensus 403 ~~~~g~~~~~GR~~~~i~~~G~~i~~~~IE~~l~~-~~~v~~~~v~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~~ 481 (524)
T PRK06188 403 EDEDGFYYIVDRKKDMIVTGGFNVFPREVEDVLAE-HPAVAQVAVIGVPDEKWGEAVTAVVVLRPGAAVDAAELQAHVKE 481 (524)
T ss_pred EcCCccEEEEeccccceecCCEEECHHHHHHHHHh-CCCeeEEEEEeccCCCcCceEEEEEEECCCCCCCHHHHHHHHHH
Confidence 654 33 89999999999999999999999999 9999999999873 3566666665432 233466666666
Q ss_pred HHHHhcCeeecEEEEEcCCCcccCCCchhhHHHHHHHHHcCCCC
Q psy14342 265 AVLEEHHLIVGVAVVVDPGVVPINSRGEKQRMHLRDGFLADQLD 308 (316)
Q Consensus 265 ~l~~~~~~~~~~~~~~~~~~lP~t~~gKi~r~~l~~~~~~~~~~ 308 (316)
.+. .+..| ..+++++ ++|+|++||++|++|++.|.+|++.
T Consensus 482 ~l~-~~~~p-~~i~~v~--~~P~t~~gKi~r~~L~~~~~~~~~~ 521 (524)
T PRK06188 482 RKG-SVHAP-KQVDFVD--SLPLTALGKPDKKALRARYWEGRGR 521 (524)
T ss_pred hcc-cCCCC-cEEEEec--CCCCCccccccHHHHHHHHHhhccc
Confidence 665 34444 4566665 8999999999999999999887653
|
|
| >PRK06164 acyl-CoA synthetase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=1e-35 Score=283.03 Aligned_cols=290 Identities=17% Similarity=0.128 Sum_probs=216.1
Q ss_pred CeEEEEeccCCCCCceEEEEeHHHHHHHHHHHHHHhcCCCCCceEEecCCcCChhhhHHHHhhhhcCceeeeeCCccccc
Q psy14342 1 MLAYLDFSVSTTGMLAGIKMSHAAVTSLCRSMKLACELYPSRHIALCLDPYCGLGFALWVLSSVYSGHHSILIPPSEVEV 80 (316)
Q Consensus 1 ~~a~i~~TSGTTG~PK~V~~t~~~l~~~~~~~~~~~~~~~~d~~l~~~p~~h~~g~~~~~~~~l~~G~~~v~~~~~~~~~ 80 (316)
++++++|||||||.||+|.++|+++...+..+...+++.++|+++.++|++|.+|+.. ++.++..|+++++.++.
T Consensus 182 ~~~~i~~TSGtTG~pK~v~~s~~~l~~~~~~~~~~~~~~~~~~~l~~~p~~~~~g~~~-~~~~l~~G~~~~~~~~~---- 256 (540)
T PRK06164 182 AGALLFTTSGTTSGPKLVLHRQATLLRHARAIARAYGYDPGAVLLAALPFCGVFGFST-LLGALAGGAPLVCEPVF---- 256 (540)
T ss_pred ceEEEEECCCCCCCCcEEEEehHHHHHHHHHHHHhcCCCCCCEEEEcCCchhHHHHHH-HHHHHhcCceEEecCCC----
Confidence 4789999999999999999999999999888889999999999999999999999975 89999999999887532
Q ss_pred ChHHHHHHHhccceeeEEecccchhhHHhhHHh---hhhhcccccc-----------------cccccccccchhccCCC
Q psy14342 81 NPALWLSAVSQYRVRDTFCSYGMLAGIKMSHAA---VTSLCRSMKL-----------------ACELYPSRHIALCLDPY 140 (316)
Q Consensus 81 ~~~~~~~~~~~~~~t~~~~~~~~~~~l~~~~~~---~~~~~~~~~l-----------------s~e~~~~yG~te~~~~~ 140 (316)
++..+++.++++++|+++.+|+++..+...... +... +.+.. ..++++.||+||++...
T Consensus 257 ~~~~~~~~l~~~~~t~~~~~p~~l~~l~~~~~~~~~~~~l-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~YG~tE~~~~~ 335 (540)
T PRK06164 257 DAARTARALRRHRVTHTFGNDEMLRRILDTAGERADFPSA-RLFGFASFAPALGELAALARARGVPLTGLYGSSEVQALV 335 (540)
T ss_pred CHHHHHHHHHHhCCeeecCCHHHHHHHHHhhcccCCCcce-eeeeeccCCcchHHHHHHHhhcCCceecceeecccccee
Confidence 578899999999999999999888655443111 0000 00000 01388899999987543
Q ss_pred CCCCceE-EEEeeeccCccccc-CCCce-EEecCc------------eEEecC---CCcccCCCcCCC-----------C
Q psy14342 141 CGLGFAL-WVLSSVYSGHHSIL-IPPSE-VEVNPA------------LWLSAV---SQYRVRDTFCSC-----------N 191 (316)
Q Consensus 141 ~~~~~~~-~~~~~~~~g~~~~~-~~g~~-~i~d~~------------l~v~~~---~gY~~~~~~~~~-----------d 191 (316)
....... ...... ..+.+ .+++. +++|++ |+++|+ .|||++++.+.. |
T Consensus 336 ~~~~~~~~~~~~~~---~~g~~~~~~~~~~i~d~~~~~~~~~g~~Gel~v~g~~~~~gY~~~~~~t~~~~~~~~~~~TGD 412 (540)
T PRK06164 336 ALQPATDPVSVRIE---GGGRPASPEARVRARDPQDGALLPDGESGEIEIRAPSLMRGYLDNPDATARALTDDGYFRTGD 412 (540)
T ss_pred eccCCCCCCcceec---cCccccCCCeEEEEecCCCCcCCCCCCeeEEEEecccccccccCCchhhhhcccCCCceecCC
Confidence 2221100 000111 11223 36777 777742 999999 899999876532 5
Q ss_pred ceeeec-Cc---CCcccceeEECCcccChHhHHHHHHHhccccceeEEEeeC----CcEEEEEEecCCc-hhhcchHHHH
Q psy14342 192 GALYQG-AE---RLALDETIMLRGMRYHPIDIENSVMRAHKKIAECAVFTWT----NLLVVVVELDGNE-SEALDLVPLV 262 (316)
Q Consensus 192 ~g~~~~-g~---~GR~dd~i~~~G~~v~p~eIE~~l~~~~p~v~~~~v~~~~----~~~~~~v~~~~~~-~~~~~l~~~~ 262 (316)
.|++++ |. .||.||+||++|++|+|.|||++|.+ ||.|.+++|++.. +.++++++..+.. .+.+++.+.+
T Consensus 413 l~~~~~~g~l~~~GR~~~~i~~~G~~i~p~eIE~~l~~-~~~v~~~~v~~~~~~~~~~~~~~vv~~~~~~~~~~~l~~~~ 491 (540)
T PRK06164 413 LGYTRGDGQFVYQTRMGDSLRLGGFLVNPAEIEHALEA-LPGVAAAQVVGATRDGKTVPVAFVIPTDGASPDEAGLMAAC 491 (540)
T ss_pred eEEEcCCceEEEEeecCCeEEECCEEcCHHHHHHHHHh-CCCceeEEEEecCCCCceeEEEEEEeCCCCCCCHHHHHHHH
Confidence 555543 32 89999999999999999999999999 9999999999862 3566666665432 3446788888
Q ss_pred HHHHHHhcCeeecEEEEEcCCCcccCCCc---hhhHHHHHHHHHc
Q psy14342 263 TNAVLEEHHLIVGVAVVVDPGVVPINSRG---EKQRMHLRDGFLA 304 (316)
Q Consensus 263 ~~~l~~~~~~~~~~~~~~~~~~lP~t~~g---Ki~r~~l~~~~~~ 304 (316)
++.+. .+..| ..+.+++ .+|+|++| |++|+.|++.++.
T Consensus 492 ~~~l~-~~~~P-~~i~~~~--~~P~t~~g~~~Ki~r~~L~~~~~~ 532 (540)
T PRK06164 492 REALA-GFKVP-ARVQVVE--AFPVTESANGAKIQKHRLREMAQA 532 (540)
T ss_pred Hhhcc-cCcCC-cEEEEec--CCCCCCCCccccccHHHHHHHHHH
Confidence 87776 55555 4566655 89999999 9999999988664
|
|
| >PRK13382 acyl-CoA synthetase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.5e-36 Score=285.26 Aligned_cols=286 Identities=15% Similarity=0.099 Sum_probs=211.1
Q ss_pred CeEEEEeccCCCCCceEEEEeHHHHHHHHHHHHHHhcCCCCCceEEecCCcCChhhhHHHHhhhhcCceeeeeCCccccc
Q psy14342 1 MLAYLDFSVSTTGMLAGIKMSHAAVTSLCRSMKLACELYPSRHIALCLDPYCGLGFALWVLSSVYSGHHSILIPPSEVEV 80 (316)
Q Consensus 1 ~~a~i~~TSGTTG~PK~V~~t~~~l~~~~~~~~~~~~~~~~d~~l~~~p~~h~~g~~~~~~~~l~~G~~~v~~~~~~~~~ 80 (316)
++++++|||||||.||||+++|+++..........+.+..+|+++..+|++|.+|+.. ++.++..|+++++... .
T Consensus 197 ~~~~il~TSGTTG~PKgv~~s~~~~~~~~~~~~~~~~~~~~~~~l~~~p~~~~~g~~~-~~~~l~~g~~~~~~~~----~ 271 (537)
T PRK13382 197 KGRVILLTSGTTGTPKGARRSGPGGIGTLKAILDRTPWRAEEPTVIVAPMFHAWGFSQ-LVLAASLACTIVTRRR----F 271 (537)
T ss_pred CCeEEEECCCCCCCCCEEEeccchHHHHHHHHHHhhCCCCCCeEEEecChHhhhHHHH-HHHHHhcCcEEEECCC----c
Confidence 4689999999999999999999988888777777788888999999999999999865 8889999999888643 2
Q ss_pred ChHHHHHHHhccceeeEEecccchhhHHhhHHh-hhh----hcccccccc-----------------cccccccchhccC
Q psy14342 81 NPALWLSAVSQYRVRDTFCSYGMLAGIKMSHAA-VTS----LCRSMKLAC-----------------ELYPSRHIALCLD 138 (316)
Q Consensus 81 ~~~~~~~~~~~~~~t~~~~~~~~~~~l~~~~~~-~~~----~~~~~~ls~-----------------e~~~~yG~te~~~ 138 (316)
+|..+++.+++++++++..+|+++..+...... ... ..+.+..++ .+++.||+||++.
T Consensus 272 ~~~~~~~~i~~~~vt~~~~~P~~~~~l~~~~~~~~~~~~~~~lr~i~~gG~~l~~~~~~~~~~~~~~~i~~~YG~TE~~~ 351 (537)
T PRK13382 272 DPEATLDLIDRHRATGLAVVPVMFDRIMDLPAEVRNRYSGRSLRFAAASGSRMRPDVVIAFMDQFGDVIYNNYNATEAGM 351 (537)
T ss_pred CHHHHHHHHHHhCCEEEEehHHHHHHHHcCCchhcccCCccceeEEEEcCCCCCHHHHHHHHHHcCCcEEecccccccCc
Confidence 688999999999999999999988765443211 000 011122222 2788999999875
Q ss_pred CCCCCCceEEEEeeeccCcccccCCCce-EEecCc-----------eEEecC---CCcccCCCc-------CCCCceeee
Q psy14342 139 PYCGLGFALWVLSSVYSGHHSILIPPSE-VEVNPA-----------LWLSAV---SQYRVRDTF-------CSCNGALYQ 196 (316)
Q Consensus 139 ~~~~~~~~~~~~~~~~~g~~~~~~~g~~-~i~d~~-----------l~v~~~---~gY~~~~~~-------~~~d~g~~~ 196 (316)
........ .....++.|.+++|++ +++|++ |+++|+ .||+..... .++|.++++
T Consensus 352 ~~~~~~~~----~~~~~~~vG~p~~~~~~~i~d~~~~~~~~g~~GEl~v~g~~~~~gY~~~~~~~~~~g~~~TGDl~~~~ 427 (537)
T PRK13382 352 IATATPAD----LRAAPDTAGRPAEGTEIRILDQDFREVPTGEVGTIFVRNDTQFDGYTSGSTKDFHDGFMASGDVGYLD 427 (537)
T ss_pred ceecChhH----hccCCCCccccCcCcEEEEECCCCCCCCCCCeeEEEEEcCCcccCccccchhhccCCCEeeCceEEEe
Confidence 33322111 0112345556899999 888764 999999 899832111 123666665
Q ss_pred c-Cc---CCcccceeEECCcccChHhHHHHHHHhccccceeEEEeeC-----CcEEEEEEecCCc-hhhcchHHHHHHHH
Q psy14342 197 G-AE---RLALDETIMLRGMRYHPIDIENSVMRAHKKIAECAVFTWT-----NLLVVVVELDGNE-SEALDLVPLVTNAV 266 (316)
Q Consensus 197 ~-g~---~GR~dd~i~~~G~~v~p~eIE~~l~~~~p~v~~~~v~~~~-----~~~~~~v~~~~~~-~~~~~l~~~~~~~l 266 (316)
+ |. .||.||+||++|++|+|.|||+.|.+ ||+|.+++|++.. +.+++++++.+.. .+.+++.++++..+
T Consensus 428 ~~g~l~~~GR~dd~ik~~G~~v~~~eIE~~l~~-~~~V~~~~v~~~~~~~~g~~~~a~vv~~~~~~~~~~~l~~~l~~~l 506 (537)
T PRK13382 428 ENGRLFVVGRDDEMIVSGGENVYPIEVEKTLAT-HPDVAEAAVIGVDDEQYGQRLAAFVVLKPGASATPETLKQHVRDNL 506 (537)
T ss_pred CCCcEEEeccccceeEECCEEECHHHHHHHHHh-CCCEeeEEEEccCccccCCEEEEEEEECCCCCCCHHHHHHHHHHhc
Confidence 4 33 99999999999999999999999999 9999999999883 3567767665432 23356667777666
Q ss_pred HHhcCeeecEEEEEcCCCcccCCCchhhHHHHHH
Q psy14342 267 LEEHHLIVGVAVVVDPGVVPINSRGEKQRMHLRD 300 (316)
Q Consensus 267 ~~~~~~~~~~~~~~~~~~lP~t~~gKi~r~~l~~ 300 (316)
. .+..| ..+.++. ++|+|++||++|++|++
T Consensus 507 ~-~~~~P-~~i~~v~--~lP~t~~gK~~r~~L~~ 536 (537)
T PRK13382 507 A-NYKVP-RDIVVLD--ELPRGATGKILRRELQA 536 (537)
T ss_pred c-CCCCC-cEEEEec--cCCCCCCCCCcHHhhCC
Confidence 6 44454 4556654 89999999999999864
|
|
| >PRK07514 malonyl-CoA synthase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.6e-36 Score=281.08 Aligned_cols=288 Identities=14% Similarity=0.114 Sum_probs=214.3
Q ss_pred CeEEEEeccCCCCCceEEEEeHHHHHHHHHHHHHHhcCCCCCceEEecCCcCChhhhHHHHhhhhcCceeeeeCCccccc
Q psy14342 1 MLAYLDFSVSTTGMLAGIKMSHAAVTSLCRSMKLACELYPSRHIALCLDPYCGLGFALWVLSSVYSGHHSILIPPSEVEV 80 (316)
Q Consensus 1 ~~a~i~~TSGTTG~PK~V~~t~~~l~~~~~~~~~~~~~~~~d~~l~~~p~~h~~g~~~~~~~~l~~G~~~v~~~~~~~~~ 80 (316)
++++|+|||||||.||+|.++|+++...+......++++++|+++.++|++|..|+...++.++..|+++++.+..
T Consensus 157 ~~a~i~~TSGtTG~PK~v~~s~~~l~~~~~~~~~~~~~~~~d~~l~~~p~~~~~g~~~~~~~~l~~G~~~~~~~~~---- 232 (504)
T PRK07514 157 DLAAILYTSGTTGRSKGAMLSHGNLLSNALTLVDYWRFTPDDVLIHALPIFHTHGLFVATNVALLAGASMIFLPKF---- 232 (504)
T ss_pred CeEEEEECCCCCCCCcEEEEecHHHHHHHHHHHHHhCCCCccEEEEecchHHHHHHHHHHHHHHhcCcEEEECCCC----
Confidence 5799999999999999999999999999888888899999999999999999999988788999999999987542
Q ss_pred ChHHHHHHHhccceeeEEecccchhhHHhhHHhhh---hhcccccccc-----------------cccccccchhccCCC
Q psy14342 81 NPALWLSAVSQYRVRDTFCSYGMLAGIKMSHAAVT---SLCRSMKLAC-----------------ELYPSRHIALCLDPY 140 (316)
Q Consensus 81 ~~~~~~~~~~~~~~t~~~~~~~~~~~l~~~~~~~~---~~~~~~~ls~-----------------e~~~~yG~te~~~~~ 140 (316)
++..+++.+ .++++++.+|.++..+........ ...+.+-.++ .+++.||+||++...
T Consensus 233 ~~~~~~~~i--~~~t~~~~~P~~~~~l~~~~~~~~~~~~~lr~~~~gg~~~~~~~~~~~~~~~~~~~~~~YG~tE~~~~~ 310 (504)
T PRK07514 233 DPDAVLALM--PRATVMMGVPTFYTRLLQEPRLTREAAAHMRLFISGSAPLLAETHREFQERTGHAILERYGMTETNMNT 310 (504)
T ss_pred CHHHHHHHH--HhheeeecHHHHHHHHHcCCCCCcccccceeeEEecCCCCCHHHHHHHHHHhCCcceeecccccccccc
Confidence 578888888 368888888888765443221100 0011111111 278899999986432
Q ss_pred CCCCceEEEEeeeccCcccccCCCce-EEecCc------------eEEecC---CCcccCCCcCC-----------CCce
Q psy14342 141 CGLGFALWVLSSVYSGHHSILIPPSE-VEVNPA------------LWLSAV---SQYRVRDTFCS-----------CNGA 193 (316)
Q Consensus 141 ~~~~~~~~~~~~~~~g~~~~~~~g~~-~i~d~~------------l~v~~~---~gY~~~~~~~~-----------~d~g 193 (316)
..... .....++.+.+++|++ +++|++ |+++|+ .|||++++.+. +|.|
T Consensus 311 ~~~~~-----~~~~~~~~G~~~~~~~v~i~d~~~~~~~~~g~~Gel~i~~~~~~~gy~~~~~~~~~~~~~~~~~~TGDl~ 385 (504)
T PRK07514 311 SNPYD-----GERRAGTVGFPLPGVSLRVTDPETGAELPPGEIGMIEVKGPNVFKGYWRMPEKTAEEFRADGFFITGDLG 385 (504)
T ss_pred cCCcc-----ccccCcccccCCCCcEEEEEECCCCCCCCCCCceEEEEecCCccccccCCchhhhhhcccCCCeeecceE
Confidence 21110 1111234445899999 888832 999999 89999876543 2555
Q ss_pred eeec-Cc---CCcccceeEECCcccChHhHHHHHHHhccccceeEEEeeC-----CcEEEEEEecCCch-hhcchHHHHH
Q psy14342 194 LYQG-AE---RLALDETIMLRGMRYHPIDIENSVMRAHKKIAECAVFTWT-----NLLVVVVELDGNES-EALDLVPLVT 263 (316)
Q Consensus 194 ~~~~-g~---~GR~dd~i~~~G~~v~p~eIE~~l~~~~p~v~~~~v~~~~-----~~~~~~v~~~~~~~-~~~~l~~~~~ 263 (316)
++++ |. .||.||+||++|++|+|.|||++|.+ +++|.+++|++.. +.++++++..+... +.+++.+.++
T Consensus 386 ~~~~~g~~~~~GR~~~~i~~~G~~i~~~~IE~~l~~-~~~v~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 464 (504)
T PRK07514 386 KIDERGYVHIVGRGKDLIISGGYNVYPKEVEGEIDE-LPGVVESAVIGVPHPDFGEGVTAVVVPKPGAALDEAAILAALK 464 (504)
T ss_pred EEcCCccEEEeccccceEEeCCeEECHHHHHHHHHh-CCCeeEEEEEeCCCCCcCceEEEEEEECCCCCCCHHHHHHHHH
Confidence 5544 32 89999999999999999999999999 9999999999873 34666666554332 4456777777
Q ss_pred HHHHHhcCeeecEEEEEcCCCcccCCCchhhHHHHHHHHHc
Q psy14342 264 NAVLEEHHLIVGVAVVVDPGVVPINSRGEKQRMHLRDGFLA 304 (316)
Q Consensus 264 ~~l~~~~~~~~~~~~~~~~~~lP~t~~gKi~r~~l~~~~~~ 304 (316)
+.+. .+..| ..+++++ ++|+|++||++|++|++.|.+
T Consensus 465 ~~l~-~~~~p-~~i~~v~--~~p~t~~gK~~r~~l~~~~~~ 501 (504)
T PRK07514 465 GRLA-RFKQP-KRVFFVD--ELPRNTMGKVQKNLLREQYAD 501 (504)
T ss_pred hhcc-cCCCC-cEEEEec--cCCCCCCcceeHHHHHHHHHh
Confidence 7766 44444 3555555 899999999999999988765
|
|
| >PRK12583 acyl-CoA synthetase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-35 Score=283.23 Aligned_cols=294 Identities=17% Similarity=0.124 Sum_probs=218.0
Q ss_pred CeEEEEeccCCCCCceEEEEeHHHHHHHHHHHHHHhcCCCCCceEEecCCcCChhhhHHHHhhhhcCceeeeeCCccccc
Q psy14342 1 MLAYLDFSVSTTGMLAGIKMSHAAVTSLCRSMKLACELYPSRHIALCLDPYCGLGFALWVLSSVYSGHHSILIPPSEVEV 80 (316)
Q Consensus 1 ~~a~i~~TSGTTG~PK~V~~t~~~l~~~~~~~~~~~~~~~~d~~l~~~p~~h~~g~~~~~~~~l~~G~~~v~~~~~~~~~ 80 (316)
++++++|||||||.||+|.++|+++..++......+++.++|+++..+|++|.+|++..++.++..|+++++.... .
T Consensus 202 ~~a~i~~TSGsTG~PK~v~~s~~~l~~~~~~~~~~~~~~~~d~~~~~~p~~~~~g~~~~~~~~l~~g~~v~~~~~~---~ 278 (558)
T PRK12583 202 DPINIQYTSGTTGFPKGATLSHHNILNNGYFVAESLGLTEHDRLCVPVPLYHCFGMVLANLGCMTVGACLVYPNEA---F 278 (558)
T ss_pred CcEEEEECCCCCCCCceEEeeHHHHHHHHHHHHHHhCCCCCCeEEEecCchhhhhHHHHHHHHHhcCceEEeecCC---C
Confidence 4689999999999999999999999988888888889999999999999999999998889999999988875432 2
Q ss_pred ChHHHHHHHhccceeeEEecccchhhHHhhHHhhh---hhcccccccc------------------cccccccchhccCC
Q psy14342 81 NPALWLSAVSQYRVRDTFCSYGMLAGIKMSHAAVT---SLCRSMKLAC------------------ELYPSRHIALCLDP 139 (316)
Q Consensus 81 ~~~~~~~~~~~~~~t~~~~~~~~~~~l~~~~~~~~---~~~~~~~ls~------------------e~~~~yG~te~~~~ 139 (316)
++..+++.++++++++++.+|+++..+........ ...+.+-.++ .+.+.||.||++..
T Consensus 279 ~~~~~~~~i~~~~~t~l~~~P~~~~~l~~~~~~~~~~~~~lr~i~~~G~~~~~~~~~~~~~~~~~~~i~~~YG~tE~~~~ 358 (558)
T PRK12583 279 DPLATLQAVEEERCTALYGVPTMFIAELDHPQRGNFDLSSLRTGIMAGAPCPIEVMRRVMDEMHMAEVQIAYGMTETSPV 358 (558)
T ss_pred CHHHHHHHHHHcCCeEEeccHHHHHHHHccccccCCCchhheEEEecCCCCCHHHHHHHHHHcCCcceeccccccccccc
Confidence 68889999999999999999988754443221100 0011111111 27778999999754
Q ss_pred CCCCCceEEEEeeeccCcccccCCCce-EEecCc-----------eEEecC---CCcccCCCcC-----------CCCce
Q psy14342 140 YCGLGFALWVLSSVYSGHHSILIPPSE-VEVNPA-----------LWLSAV---SQYRVRDTFC-----------SCNGA 193 (316)
Q Consensus 140 ~~~~~~~~~~~~~~~~g~~~~~~~g~~-~i~d~~-----------l~v~~~---~gY~~~~~~~-----------~~d~g 193 (316)
........ ......++.|.+++|+. .++|++ |+++|+ .||++++..+ ++|.|
T Consensus 359 ~~~~~~~~--~~~~~~~~vG~p~~~~~~~i~d~~~~~~~~g~~Gel~v~g~~~~~gy~~~~~~~~~~~~~~~~~~TGDl~ 436 (558)
T PRK12583 359 SLQTTAAD--DLERRVETVGRTQPHLEVKVVDPDGATVPRGEIGELCTRGYSVMKGYWNNPEATAESIDEDGWMHTGDLA 436 (558)
T ss_pred eeccCccc--ccccccCCCCccCCCCeEEEECCCCCCCCCCCeeEEEEEeCccchhhcCChHHHHhhcCCCCCeeccceE
Confidence 33221100 00011233445789998 887764 899998 8999886543 22556
Q ss_pred eeec-Cc---CCcccceeEECCcccChHhHHHHHHHhccccceeEEEeeC-----CcEEEEEEecCCc-hhhcchHHHHH
Q psy14342 194 LYQG-AE---RLALDETIMLRGMRYHPIDIENSVMRAHKKIAECAVFTWT-----NLLVVVVELDGNE-SEALDLVPLVT 263 (316)
Q Consensus 194 ~~~~-g~---~GR~dd~i~~~G~~v~p~eIE~~l~~~~p~v~~~~v~~~~-----~~~~~~v~~~~~~-~~~~~l~~~~~ 263 (316)
++++ |. .||.||+|+++|++|+|.|||+.|.+ ||.|.+++|++.. +.++++++..+.. .+..++.+.++
T Consensus 437 ~~~~dg~l~i~GR~~~~i~~~G~~v~~~~IE~~l~~-~~~v~~~~v~~~~~~~~~~~~~~~v~~~~~~~~~~~~i~~~~~ 515 (558)
T PRK12583 437 TMDEQGYVRIVGRSKDMIIRGGENIYPREIEEFLFT-HPAVADVQVFGVPDEKYGEEIVAWVRLHPGHAASEEELREFCK 515 (558)
T ss_pred EECCCccEEEEecccceeEECCEEeCHHHHHHHHHh-CCCeeEEEEEeeecCCCCcEEEEEEEECCCCCCCHHHHHHHHH
Confidence 5543 33 89999999999999999999999999 9999999999873 4567777665432 23356777777
Q ss_pred HHHHHhcCeeecEEEEEcCCCcccCCCchhhHHHHHHHHHc
Q psy14342 264 NAVLEEHHLIVGVAVVVDPGVVPINSRGEKQRMHLRDGFLA 304 (316)
Q Consensus 264 ~~l~~~~~~~~~~~~~~~~~~lP~t~~gKi~r~~l~~~~~~ 304 (316)
+.+. .+..| ..+.+++ ++|+|++||++|++|++...+
T Consensus 516 ~~L~-~~~~P-~~i~~v~--~lP~t~sGK~~r~~L~~~~~~ 552 (558)
T PRK12583 516 ARIA-HFKVP-RYFRFVD--EFPMTVTGKVQKFRMREISIE 552 (558)
T ss_pred hhcc-cCcCC-cEEEEec--cCCCCCCCCccHHHHHHHHHh
Confidence 7766 44454 4555554 899999999999999998765
|
|
| >PRK10252 entF enterobactin synthase subunit F; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.3e-36 Score=311.00 Aligned_cols=294 Identities=14% Similarity=0.088 Sum_probs=216.0
Q ss_pred CeEEEEeccCCCCCceEEEEeHHHHHHHHHHHHHHhcCCCCCceEEecCCcCChhhhHHHHhhhhcCceeeeeCCccccc
Q psy14342 1 MLAYLDFSVSTTGMLAGIKMSHAAVTSLCRSMKLACELYPSRHIALCLDPYCGLGFALWVLSSVYSGHHSILIPPSEVEV 80 (316)
Q Consensus 1 ~~a~i~~TSGTTG~PK~V~~t~~~l~~~~~~~~~~~~~~~~d~~l~~~p~~h~~g~~~~~~~~l~~G~~~v~~~~~~~~~ 80 (316)
|++||+|||||||.||||+++|+++...+......+++.++|+++.+.|++|+.+++. ++.++..|+++++.++.. ..
T Consensus 599 ~~a~i~~TSGSTG~PKgV~~~h~~l~~~~~~~~~~~~~~~~d~~l~~~~~~fd~~~~~-~~~~l~~G~~l~~~~~~~-~~ 676 (1296)
T PRK10252 599 HTAYIIFTSGSTGRPKGVMVGQTAIVNRLLWMQNHYPLTADDVVLQKTPCSFDVSVWE-FFWPFIAGAKLVMAEPEA-HR 676 (1296)
T ss_pred CeEEEEECCCCCCCCCEEEeccHHHHHHHHHHHHhcCCCCCCEEEEeCCcchhhhHHH-HHHHHhCCCEEEECChhc-cC
Confidence 5799999999999999999999999999999999999999999999999999998876 899999999999976543 45
Q ss_pred ChHHHHHHHhccceeeEEecccchhhHHhhHHhhh-----hhcccccccc-----------------cccccccchhccC
Q psy14342 81 NPALWLSAVSQYRVRDTFCSYGMLAGIKMSHAAVT-----SLCRSMKLAC-----------------ELYPSRHIALCLD 138 (316)
Q Consensus 81 ~~~~~~~~~~~~~~t~~~~~~~~~~~l~~~~~~~~-----~~~~~~~ls~-----------------e~~~~yG~te~~~ 138 (316)
+|..+++.++++++|++..+|+.+..+........ ...+.+-.++ .+++.||+||++.
T Consensus 677 ~~~~~~~~i~~~~vt~~~~~Ps~l~~l~~~~~~~~~~~~~~~lr~i~~gGe~l~~~~~~~~~~~~~~~l~n~YG~TE~~~ 756 (1296)
T PRK10252 677 DPLAMQQFFAEYGVTTTHFVPSMLAAFVASLTPEGARQSCASLRQVFCSGEALPADLCREWQQLTGAPLHNLYGPTEAAV 756 (1296)
T ss_pred CHHHHHHHHHHcCCeEEEeCHHHHHHHHhhhccccccccCCCccEEEEecCCCCHHHHHHHHhcCCCEEEeCCCcchhhh
Confidence 78999999999999999999998865543321100 0011111222 2888999999864
Q ss_pred CCCCCCceEEEE--eeeccCcccccCCCce-EEecCc-----------eEEecC---CCcccCCCcCCC-----------
Q psy14342 139 PYCGLGFALWVL--SSVYSGHHSILIPPSE-VEVNPA-----------LWLSAV---SQYRVRDTFCSC----------- 190 (316)
Q Consensus 139 ~~~~~~~~~~~~--~~~~~g~~~~~~~g~~-~i~d~~-----------l~v~~~---~gY~~~~~~~~~----------- 190 (316)
............ ......+.|.+++|.+ .++|++ |+++|+ .||+++++.+..
T Consensus 757 ~~~~~~~~~~~~~~~~~~~~~iG~p~~~~~~~i~d~~~~~~~~g~~Gel~i~g~~~~~GY~~~~~~t~~~f~~~~~~~~~ 836 (1296)
T PRK10252 757 DVSWYPAFGEELAAVRGSSVPIGYPVWNTGLRILDARMRPVPPGVAGDLYLTGIQLAQGYLGRPDLTASRFIADPFAPGE 836 (1296)
T ss_pred eeeeeecccccccccCCCCCCcccccCCCEEEEECCCCCCCCCCCceEEEecccccchhhCCCcccchhhcccCCCCCCC
Confidence 322111100000 0011124556899999 888754 999999 899998876532
Q ss_pred ------Cceeeec-Cc---CCcccceeEECCcccChHhHHHHHHHhccccceeEEEee---------CC--cEEEEEEec
Q psy14342 191 ------NGALYQG-AE---RLALDETIMLRGMRYHPIDIENSVMRAHKKIAECAVFTW---------TN--LLVVVVELD 249 (316)
Q Consensus 191 ------d~g~~~~-g~---~GR~dd~i~~~G~~v~p~eIE~~l~~~~p~v~~~~v~~~---------~~--~~~~~v~~~ 249 (316)
|.|++++ |. +||.||+||++|+||+|.|||++|.+ ||.|.+++|+.. ++ .++++++..
T Consensus 837 ~~y~TGDl~~~~~~G~l~~~GR~d~~ik~~G~ri~~~eIE~~l~~-~~~v~~a~v~~~~~~~~~~~~~~~~~lva~v~~~ 915 (1296)
T PRK10252 837 RMYRTGDVARWLDDGAVEYLGRSDDQLKIRGQRIELGEIDRAMQA-LPDVEQAVTHACVINQAAATGGDARQLVGYLVSQ 915 (1296)
T ss_pred EEEecCceEEEcCCCcEEEecccCCeEEEeeEEecHHHHHHHHHh-CccccceEEEEEeccccccCCCCccEEEEEEEcC
Confidence 5555543 33 99999999999999999999999999 999999987754 12 477777655
Q ss_pred CCc-hhhcchHHHHHHHHHHhcCeeecEEEEEcCCCcccCCCchhhHHHHHHH
Q psy14342 250 GNE-SEALDLVPLVTNAVLEEHHLIVGVAVVVDPGVVPINSRGEKQRMHLRDG 301 (316)
Q Consensus 250 ~~~-~~~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~lP~t~~gKi~r~~l~~~ 301 (316)
... .+.+++.+.+++.+. .+..| ..+.. ++.+|+|++||++|++|.+.
T Consensus 916 ~~~~~~~~~l~~~l~~~Lp-~~~~P-~~~~~--~~~lP~t~~GKidr~~L~~~ 964 (1296)
T PRK10252 916 SGLPLDTSALQAQLRERLP-PHMVP-VVLLQ--LDQLPLSANGKLDRKALPLP 964 (1296)
T ss_pred CCCCCCHHHHHHHHHhhCc-hhcCC-cEEEE--ecCCCCCCCcChhHHhcCCC
Confidence 432 233567777776666 33333 33444 45899999999999999753
|
|
| >PRK07768 long-chain-fatty-acid--CoA ligase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.3e-35 Score=280.89 Aligned_cols=302 Identities=18% Similarity=0.199 Sum_probs=214.1
Q ss_pred CeEEEEeccCCCCCceEEEEeHHHHHHHHHHHHHHhcCCCC-CceEEecCCcCChhhhHHHHhhhhcCceeeeeCCcccc
Q psy14342 1 MLAYLDFSVSTTGMLAGIKMSHAAVTSLCRSMKLACELYPS-RHIALCLDPYCGLGFALWVLSSVYSGHHSILIPPSEVE 79 (316)
Q Consensus 1 ~~a~i~~TSGTTG~PK~V~~t~~~l~~~~~~~~~~~~~~~~-d~~l~~~p~~h~~g~~~~~~~~l~~G~~~v~~~~~~~~ 79 (316)
|+++|+|||||||.||+|+++|+++...+......+++.++ |+++.++|++|.+|++..++.++..|+++++..+..+.
T Consensus 153 ~~a~i~~TSGtTG~PKgv~~s~~~~~~~~~~~~~~~~~~~~~d~~~~~~p~~~~~g~~~~~~~~l~~g~~~v~~~~~~~~ 232 (545)
T PRK07768 153 DLALMQLTSGSTGSPKAVQITHGNLYANAEAMFVAAEFDVETDVMVSWLPLFHDMGMVGFLTVPMYFGAELVKVTPMDFL 232 (545)
T ss_pred CEEEEEeCCCCCCCCceEEEcHHHHHHHHHHHHHhcCCCCCCceeEEeCCCccchHHHHHHHHHHHCCceEEEeCHHHHH
Confidence 58999999999999999999999999888888888888876 89999999999999988778899999999998876666
Q ss_pred cChHHHHHHHhccceeeEEecccchhhHHhhHHhh------h-hhcccccccc-----------------------cccc
Q psy14342 80 VNPALWLSAVSQYRVRDTFCSYGMLAGIKMSHAAV------T-SLCRSMKLAC-----------------------ELYP 129 (316)
Q Consensus 80 ~~~~~~~~~~~~~~~t~~~~~~~~~~~l~~~~~~~------~-~~~~~~~ls~-----------------------e~~~ 129 (316)
.+|..|++++++++++++..++..+..+....... . ...+.+-..+ .+++
T Consensus 233 ~~~~~~~~~i~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~lr~~~~~g~~~~~~~~~~~~~~~~~~g~~~~~~~~ 312 (545)
T PRK07768 233 RDPLLWAELISKYRGTMTAAPNFAYALLARRLRRQAKPGAFDLSSLRFALNGAEPIDPADVEDLLDAGARFGLRPEAILP 312 (545)
T ss_pred HhHHHHHHHHHHhCCEEEECchHHHHHHHHHHhccccccCCCchheeeEEeccCCCCHHHHHHHHHHHHhcCCCcccccc
Confidence 68889999999999997654444432222211000 0 0000000000 2678
Q ss_pred cccchhccCCCCCCCc--e--EEE-------------E----eeeccCcccccCCCce-EEecCc-----------eEEe
Q psy14342 130 SRHIALCLDPYCGLGF--A--LWV-------------L----SSVYSGHHSILIPPSE-VEVNPA-----------LWLS 176 (316)
Q Consensus 130 ~yG~te~~~~~~~~~~--~--~~~-------------~----~~~~~g~~~~~~~g~~-~i~d~~-----------l~v~ 176 (316)
.||+||++........ . ... . .....+..|.+++|.+ +++|++ |+++
T Consensus 313 ~yG~tE~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~g~~~~i~~~~~~~~~~g~~Gel~v~ 392 (545)
T PRK07768 313 AYGMAEATLAVSFSPCGAGLVVDEVDADLLAALRRAVPATKGNTRRLATLGPPLPGLEVRVVDEDGQVLPPRGVGVIELR 392 (545)
T ss_pred cccccccceEEEccCCCCCcceeeechhHhhccCceeccCCCCcceEEeccCCCCCCEEEEECCCCCCCCCCCEEEEEEc
Confidence 8999998643211100 0 000 0 0001123345789999 887743 8999
Q ss_pred cC---CCcccCCCcC----------CCCceeeec-Cc---CCcccceeEECCcccChHhHHHHHHHhccccceeEEEeeC
Q psy14342 177 AV---SQYRVRDTFC----------SCNGALYQG-AE---RLALDETIMLRGMRYHPIDIENSVMRAHKKIAECAVFTWT 239 (316)
Q Consensus 177 ~~---~gY~~~~~~~----------~~d~g~~~~-g~---~GR~dd~i~~~G~~v~p~eIE~~l~~~~p~v~~~~v~~~~ 239 (316)
|+ .|||+++... ++|.|++++ |. +||.||+||++|++|+|.|||++|.+ ||.|.+++|++..
T Consensus 393 ~~~~~~gy~~~~~~~~~~~~~g~~~TGDl~~~~~~g~l~~~GR~~d~i~~~G~~v~~~eiE~~l~~-~~~v~~~~vv~~~ 471 (545)
T PRK07768 393 GESVTPGYLTMDGFIPAQDADGWLDTGDLGYLTEEGEVVVCGRVKDVIIMAGRNIYPTDIERAAAR-VEGVRPGNAVAVR 471 (545)
T ss_pred cCcccccccCCCCCcccccCCCeeeccceEEEecCCEEEEEccccceEEECCEecCHHHHHHHHHh-CcccccceEEEEE
Confidence 98 8999864322 225555554 43 99999999999999999999999999 9999997777652
Q ss_pred -------CcEEEEEEecCCch--hhcchHHHHHHHHHHhcCeeecEEEEEcCCCcccCCCchhhHHHHHHHHH
Q psy14342 240 -------NLLVVVVELDGNES--EALDLVPLVTNAVLEEHHLIVGVAVVVDPGVVPINSRGEKQRMHLRDGFL 303 (316)
Q Consensus 240 -------~~~~~~v~~~~~~~--~~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~lP~t~~gKi~r~~l~~~~~ 303 (316)
+.++++++...... ...++.+.+++.+...++..+..+.+++.+.||+|++||++|+.|++.|.
T Consensus 472 ~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~~~l~~~~~~~p~~v~~v~~~~lP~t~~GKi~r~~l~~~~~ 544 (545)
T PRK07768 472 LDAGHSREGFAVAVESNAFEDPAEVRRIRHQVAHEVVAEVGVRPRNVVVLGPGSIPKTPSGKLRRANAAELVT 544 (545)
T ss_pred ecCCCCceEEEEEEEecccccHHHHHHHHHHHHHHHHHHhCCCccEEEEeCCCcCCCCCchhHHHHHHHHhcC
Confidence 24555554443221 11356677777777666555567888887799999999999999998875
|
|
| >PRK07470 acyl-CoA synthetase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-35 Score=281.94 Aligned_cols=299 Identities=16% Similarity=0.108 Sum_probs=211.4
Q ss_pred CeEEEEeccCCCCCceEEEEeHHHHHHHHHHHH-HHh-cCCCCCceEEecCCcCChhhhHHHHhhhhcCceeeeeCCccc
Q psy14342 1 MLAYLDFSVSTTGMLAGIKMSHAAVTSLCRSMK-LAC-ELYPSRHIALCLDPYCGLGFALWVLSSVYSGHHSILIPPSEV 78 (316)
Q Consensus 1 ~~a~i~~TSGTTG~PK~V~~t~~~l~~~~~~~~-~~~-~~~~~d~~l~~~p~~h~~g~~~~~~~~l~~G~~~v~~~~~~~ 78 (316)
++++|+|||||||.||+|.++|+++...+.... ..+ +..++|+++.++|++|++++.. ++ .++.|+++++.+...+
T Consensus 164 ~~a~i~~TSGTTG~PK~v~~s~~~l~~~~~~~~~~~~~~~~~~d~~l~~~p~~~~~~~~~-~~-~~~~g~~~~~~~~~~~ 241 (528)
T PRK07470 164 DPCWFFFTSGTTGRPKAAVLTHGQMAFVITNHLADLMPGTTEQDASLVVAPLSHGAGIHQ-LC-QVARGAATVLLPSERF 241 (528)
T ss_pred CeEEEEeCCCCCCCCcEEEEehhhHHHHHHHHHHHhccCCCcccEEEEeccchhHHHHHH-HH-HHhcCceEEEecccCc
Confidence 589999999999999999999999875543322 222 4677899999999999998865 44 5777888877654332
Q ss_pred ccChHHHHHHHhccceeeEEecccchhhHHhhHHhhh---hhcccccccc-----------------cccccccchhccC
Q psy14342 79 EVNPALWLSAVSQYRVRDTFCSYGMLAGIKMSHAAVT---SLCRSMKLAC-----------------ELYPSRHIALCLD 138 (316)
Q Consensus 79 ~~~~~~~~~~~~~~~~t~~~~~~~~~~~l~~~~~~~~---~~~~~~~ls~-----------------e~~~~yG~te~~~ 138 (316)
++..+++.+++++++++..+|+++..+........ ...+.+-.++ .+.+.||+||++.
T Consensus 242 --~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~lr~~~~gG~~l~~~~~~~~~~~~g~~~~~~YG~TE~~~ 319 (528)
T PRK07470 242 --DPAEVWALVERHRVTNLFTVPTILKMLVEHPAVDRYDHSSLRYVIYAGAPMYRADQKRALAKLGKVLVQYFGLGEVTG 319 (528)
T ss_pred --CHHHHHHHHHhcCCeEEechHHHHHHHHhCcCcCCCCCcceEEEEEcCCCCCHHHHHHHHHHhCcHHHHhCCCcccCC
Confidence 68889999999999999999998876544322100 0011111111 2778999999865
Q ss_pred CCCCCCceEEE---EeeeccCcccccCCCce-EEecCc-----------eEEecC---CCcccCCCcCC----------C
Q psy14342 139 PYCGLGFALWV---LSSVYSGHHSILIPPSE-VEVNPA-----------LWLSAV---SQYRVRDTFCS----------C 190 (316)
Q Consensus 139 ~~~~~~~~~~~---~~~~~~g~~~~~~~g~~-~i~d~~-----------l~v~~~---~gY~~~~~~~~----------~ 190 (316)
......+.... ......++.|.+++|.+ ++.|++ |+++|+ .|||++++.+. +
T Consensus 320 ~~~~~~~~~~~~~~~~~~~~~~~G~~~~g~~~~i~d~~~~~~~~g~~Gel~i~~~~~~~gy~~~~~~~~~~~~~~~~~TG 399 (528)
T PRK07470 320 NITVLPPALHDAEDGPDARIGTCGFERTGMEVQIQDDEGRELPPGETGEICVIGPAVFAGYYNNPEANAKAFRDGWFRTG 399 (528)
T ss_pred ceeecchhhccccccccceeeccCcccCCcEEEEECCCCCCCCCCCceEEEEeCCccchhhcCCHHHHHhhhcCCcEecc
Confidence 33222110000 00111233345789988 777753 899999 89999866543 2
Q ss_pred Cceeeec-Cc---CCcccceeEECCcccChHhHHHHHHHhccccceeEEEeeC-----CcEEEEEEecCCc-hhhcchHH
Q psy14342 191 NGALYQG-AE---RLALDETIMLRGMRYHPIDIENSVMRAHKKIAECAVFTWT-----NLLVVVVELDGNE-SEALDLVP 260 (316)
Q Consensus 191 d~g~~~~-g~---~GR~dd~i~~~G~~v~p~eIE~~l~~~~p~v~~~~v~~~~-----~~~~~~v~~~~~~-~~~~~l~~ 260 (316)
|.|++++ |. .||.||+||++|++|+|.|||++|.+ +|.|.+|+|++.. +..++++...+.. .+.+++.+
T Consensus 400 Dl~~~~~~g~l~~~GR~dd~i~~~G~~v~~~~IE~~l~~-~~~v~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 478 (528)
T PRK07470 400 DLGHLDARGFLYITGRASDMYISGGSNVYPREIEEKLLT-HPAVSEVAVLGVPDPVWGEVGVAVCVARDGAPVDEAELLA 478 (528)
T ss_pred eeEEEccCCeEEEeCCccceEEeCCEEECHHHHHHHHHh-CCCceEEEEEeccCcccCceeEEEEEECCCCCCCHHHHHH
Confidence 5566643 43 99999999999999999999999999 9999999999983 3455555554432 34467888
Q ss_pred HHHHHHHHhcCeeecEEEEEcCCCcccCCCchhhHHHHHHHHHcCCCC
Q psy14342 261 LVTNAVLEEHHLIVGVAVVVDPGVVPINSRGEKQRMHLRDGFLADQLD 308 (316)
Q Consensus 261 ~~~~~l~~~~~~~~~~~~~~~~~~lP~t~~gKi~r~~l~~~~~~~~~~ 308 (316)
.+++.+. .+..| ..+.+++ ++|+|++||++|+.|++.+.+..+.
T Consensus 479 ~l~~~l~-~~~~P-~~~~~~~--~iP~t~~GKi~r~~l~~~~~~~~~~ 522 (528)
T PRK07470 479 WLDGKVA-RYKLP-KRFFFWD--ALPKSGYGKITKKMVREELEERGLL 522 (528)
T ss_pred HHHHhhh-cCCCC-cEEEEec--cCCCCCcccccHHHHHHHHHhcccc
Confidence 8888876 56665 3455554 8999999999999999998875443
|
|
| >PRK08008 caiC putative crotonobetaine/carnitine-CoA ligase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.2e-36 Score=283.01 Aligned_cols=286 Identities=13% Similarity=0.099 Sum_probs=210.1
Q ss_pred CeEEEEeccCCCCCceEEEEeHHHHHHHHHHHHHHhcCCCCCceEEecCCcCChhhhHHHHhhhhcCceeeeeCCccccc
Q psy14342 1 MLAYLDFSVSTTGMLAGIKMSHAAVTSLCRSMKLACELYPSRHIALCLDPYCGLGFALWVLSSVYSGHHSILIPPSEVEV 80 (316)
Q Consensus 1 ~~a~i~~TSGTTG~PK~V~~t~~~l~~~~~~~~~~~~~~~~d~~l~~~p~~h~~g~~~~~~~~l~~G~~~v~~~~~~~~~ 80 (316)
|+++|+|||||||.||+|.+||+++............+.++|+++.++|++|..++...++.++..|+++++.+..
T Consensus 174 ~~a~i~~TSGtTG~PK~v~~t~~~l~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~l~~G~~~~~~~~~---- 249 (517)
T PRK08008 174 DTAEILFTSGTTSRPKGVVITHYNLRFAGYYSAWQCALRDDDVYLTVMPAFHIDCQCTAAMAAFSAGATFVLLEKY---- 249 (517)
T ss_pred CeEEEEECCCCCCCCcEEEEehHHHHHHHHHHhhhcCCCCCCeEEEecCcHHHHHHHHHHHHHHhcCcEEEEcccc----
Confidence 5799999999999999999999999866544444456788999999999999888877788999999999997643
Q ss_pred ChHHHHHHHhccceeeEEecccchhhHHhhHHhhh---hhccccc----cc------------ccccccccchhccCCCC
Q psy14342 81 NPALWLSAVSQYRVRDTFCSYGMLAGIKMSHAAVT---SLCRSMK----LA------------CELYPSRHIALCLDPYC 141 (316)
Q Consensus 81 ~~~~~~~~~~~~~~t~~~~~~~~~~~l~~~~~~~~---~~~~~~~----ls------------~e~~~~yG~te~~~~~~ 141 (316)
++..+++.+++++++++..+|+++..+........ ...+.+. ++ ..+++.||+||++....
T Consensus 250 ~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~YG~tE~~~~~~ 329 (517)
T PRK08008 250 SARAFWGQVCKYRATITECIPMMIRTLMVQPPSANDRQHCLREVMFYLNLSDQEKDAFEERFGVRLLTSYGMTETIVGII 329 (517)
T ss_pred CHHHHHHHHHHcCCcEEechHHHHHHHHhCCCccccccccceeeEEecCCCHHHHHHHHHHhCCeEEeeccccccccccc
Confidence 57889999999999999989988765543221100 0001110 01 03888999999975443
Q ss_pred CCCceEEEEeeeccCcccccCCCce-EEecCc-----------eEEec---C---CCcccCCCcCCC-----------Cc
Q psy14342 142 GLGFALWVLSSVYSGHHSILIPPSE-VEVNPA-----------LWLSA---V---SQYRVRDTFCSC-----------NG 192 (316)
Q Consensus 142 ~~~~~~~~~~~~~~g~~~~~~~g~~-~i~d~~-----------l~v~~---~---~gY~~~~~~~~~-----------d~ 192 (316)
...+. .....++.|.+++|++ +++|++ |+++| + .|||++++.+.. |.
T Consensus 330 ~~~~~----~~~~~~~~G~~~~g~~~~i~d~~~~~~~~g~~Gel~v~g~~~~~~~~gy~~~~~~~~~~~~~~g~~~TGDl 405 (517)
T PRK08008 330 GDRPG----DKRRWPSIGRPGFCYEAEIRDDHNRPLPAGEIGEICIKGVPGKTIFKEYYLDPKATAKVLEADGWLHTGDT 405 (517)
T ss_pred cCCcc----ccccCCccccCCCCcEEEEECCCCCCCCCCCcceEEEeCCCCcchhhhHhCChHHHhhcccCCCCeeccce
Confidence 22221 1111223445789999 888754 89997 3 899998876542 55
Q ss_pred eeeec-Cc---CCcccceeEECCcccChHhHHHHHHHhccccceeEEEeeC-----CcEEEEEEecCCch-hhcchHHHH
Q psy14342 193 ALYQG-AE---RLALDETIMLRGMRYHPIDIENSVMRAHKKIAECAVFTWT-----NLLVVVVELDGNES-EALDLVPLV 262 (316)
Q Consensus 193 g~~~~-g~---~GR~dd~i~~~G~~v~p~eIE~~l~~~~p~v~~~~v~~~~-----~~~~~~v~~~~~~~-~~~~l~~~~ 262 (316)
|++++ |. .||.||+||++|++|+|.|||++|.+ ||.|.+++|++.. +.+.+++++..... +.+++.+++
T Consensus 406 ~~~~~~g~~~~~GR~~d~i~~~G~~i~p~~iE~~l~~-~~~v~~~~v~g~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~ 484 (517)
T PRK08008 406 GYVDEEGFFYFVDRRCNMIKRGGENVSCVELENIIAT-HPKIQDIVVVGIKDSIRDEAIKAFVVLNEGETLSEEEFFAFC 484 (517)
T ss_pred EEECCCCcEEEeecccceEEeCCEEECHHHHHHHHHh-CCceeeEEEEccCCCCCCceEEEEEEECCCCCCCHHHHHHHH
Confidence 55543 33 99999999999999999999999999 9999999999984 35667776665432 235677777
Q ss_pred HHHHHHhcCeeecEEEEEcCCCcccCCCchhhHHHHH
Q psy14342 263 TNAVLEEHHLIVGVAVVVDPGVVPINSRGEKQRMHLR 299 (316)
Q Consensus 263 ~~~l~~~~~~~~~~~~~~~~~~lP~t~~gKi~r~~l~ 299 (316)
++++. .+..| ..+.+++ ++|+|++||++|+.|+
T Consensus 485 ~~~l~-~~~~P-~~~~~v~--~iP~t~~gK~~r~~l~ 517 (517)
T PRK08008 485 EQNMA-KFKVP-SYLEIRK--DLPRNCSGKIIKKNLK 517 (517)
T ss_pred Hhhcc-cccCC-cEEEEec--cCCCCCccceehhhcC
Confidence 77766 45554 3555554 8999999999999864
|
|
| >PRK08308 acyl-CoA synthetase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-35 Score=273.07 Aligned_cols=276 Identities=13% Similarity=0.079 Sum_probs=207.0
Q ss_pred CeEEEEeccCCCCCceEEEEeHHHHHHHHHHHHHHhcCCCCCceEEecCCcCChhhhHHHHhhhhcCceeeeeCCccccc
Q psy14342 1 MLAYLDFSVSTTGMLAGIKMSHAAVTSLCRSMKLACELYPSRHIALCLDPYCGLGFALWVLSSVYSGHHSILIPPSEVEV 80 (316)
Q Consensus 1 ~~a~i~~TSGTTG~PK~V~~t~~~l~~~~~~~~~~~~~~~~d~~l~~~p~~h~~g~~~~~~~~l~~G~~~v~~~~~~~~~ 80 (316)
++++|+|||||||.||+|.+||+++..++..+...+++..+|+.+.++|++|.+|++..++.++..|+++++.+..
T Consensus 102 ~~~~i~~TSGtTG~PKgv~~s~~~l~~~~~~~~~~~~~~~~~~~~~~~p~~h~~g~~~~~~~~l~~G~~~~~~~~~---- 177 (414)
T PRK08308 102 EPSLLQYSSGTTGEPKLIRRSWTEIDREIEAYNEALNCEQDETPIVACPVTHSYGLICGVLAALTRGSKPVIITNK---- 177 (414)
T ss_pred CceEEEECCCCCCCCcEEEEehHhHHHHHHHHHHhhCCCcccEEEEecCcHHHHHHHHHHHHHHHcCCEEEecCCC----
Confidence 5799999999999999999999999998888888888889999999999999999988889999999999987542
Q ss_pred ChHHHHHHHhccceeeEEecccchhhHHhhHHhhhhhcccccccc----------------cccccccchhccCCCCCCC
Q psy14342 81 NPALWLSAVSQYRVRDTFCSYGMLAGIKMSHAAVTSLCRSMKLAC----------------ELYPSRHIALCLDPYCGLG 144 (316)
Q Consensus 81 ~~~~~~~~~~~~~~t~~~~~~~~~~~l~~~~~~~~~~~~~~~ls~----------------e~~~~yG~te~~~~~~~~~ 144 (316)
+|..+++.++++++++++.+|..+..+........ ..+.+-.++ .+++.||+||++.......
T Consensus 178 ~~~~~~~~l~~~~~t~~~~~P~~~~~l~~~~~~~~-~l~~~~~~G~~l~~~~~~~~~~~~~~~~~~YG~tE~~~~~~~~~ 256 (414)
T PRK08308 178 NPKFALNILRNTPQHILYAVPLMLHILGRLLPGTF-QFHAVMTSGTPLPEAWFYKLRERTTYMMQQYGCSEAGCVSICPD 256 (414)
T ss_pred CHHHHHHHHHHhCCeEEEcCHHHHHHHHhcCCccc-cccEEEEccCCCCHHHHHHHHHhCChhhhccCccccCCeeecCC
Confidence 68899999999999998888888765543221100 011111111 2888999999864221111
Q ss_pred ceEEEEeeeccCcccccCCCce-EEecC-----ceEEecCCCcccCCCcCCCCceeeec-Cc---CCcccceeEECCccc
Q psy14342 145 FALWVLSSVYSGHHSILIPPSE-VEVNP-----ALWLSAVSQYRVRDTFCSCNGALYQG-AE---RLALDETIMLRGMRY 214 (316)
Q Consensus 145 ~~~~~~~~~~~g~~~~~~~g~~-~i~d~-----~l~v~~~~gY~~~~~~~~~d~g~~~~-g~---~GR~dd~i~~~G~~v 214 (316)
....++.|.|+|+++ .+.++ +|++++..+++. ++|.|++++ |. +||.||+||++|++|
T Consensus 257 -------~~~~~~~G~p~~~~~~~~~~~~~~~gel~v~~~~~~~~-----TGDl~~~~~dg~l~~~GR~~~~ik~~G~~v 324 (414)
T PRK08308 257 -------MKSHLDLGNPLPHVSVSAGSDENAPEEIVVKMGDKEIF-----TKDLGYKSERGTLHFMGRMDDVINVSGLNV 324 (414)
T ss_pred -------CCCCCccCccCCCeEEEEecCCCCCceEEEEcCCceEE-----CCceEEECCCccEEEecccCCeEEECCEEE
Confidence 111234455899999 66532 288877644332 458888764 43 999999999999999
Q ss_pred ChHhHHHHHHHhccccceeEEEeeC-----CcEEEEEEecCCchhhcchHHHHHHHHHHhcCeeecEEEEEcCCCcccCC
Q psy14342 215 HPIDIENSVMRAHKKIAECAVFTWT-----NLLVVVVELDGNESEALDLVPLVTNAVLEEHHLIVGVAVVVDPGVVPINS 289 (316)
Q Consensus 215 ~p~eIE~~l~~~~p~v~~~~v~~~~-----~~~~~~v~~~~~~~~~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~lP~t~ 289 (316)
+|.|||++|.+ +|.|.+|+|++.. +.+++++.... ..+.+++.+++++++. .+..| ..+.+++ ++|+|+
T Consensus 325 ~p~eIE~~l~~-~~~v~~a~v~~~~~~~~~~~~~~~v~~~~-~~~~~~l~~~l~~~l~-~~~~P-~~i~~v~--~iP~t~ 398 (414)
T PRK08308 325 YPIEVEDVMLR-LPGVQEAVVYRGKDPVAGERVKAKVISHE-EIDPVQLREWCIQHLA-PYQVP-HEIESVT--EIPKNA 398 (414)
T ss_pred CHHHHHHHHHh-CCCeeEEEEEeccCCCCCceEEEEEEeCC-CCCHHHHHHHHHHhCc-cccCC-cEEEEec--cCCCCC
Confidence 99999999999 9999999999873 35556655443 3344677888888777 45554 4566665 899999
Q ss_pred CchhhHHHHH
Q psy14342 290 RGEKQRMHLR 299 (316)
Q Consensus 290 ~gKi~r~~l~ 299 (316)
+||++|++|.
T Consensus 399 ~GKi~r~~~~ 408 (414)
T PRK08308 399 NGKVSRKLLE 408 (414)
T ss_pred CcCeehhhhh
Confidence 9999999543
|
|
| >PRK07656 long-chain-fatty-acid--CoA ligase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.9e-36 Score=281.80 Aligned_cols=289 Identities=15% Similarity=0.104 Sum_probs=216.0
Q ss_pred CeEEEEeccCCCCCceEEEEeHHHHHHHHHHHHHHhcCCCCCceEEecCCcCChhhhHHHHhhhhcCceeeeeCCccccc
Q psy14342 1 MLAYLDFSVSTTGMLAGIKMSHAAVTSLCRSMKLACELYPSRHIALCLDPYCGLGFALWVLSSVYSGHHSILIPPSEVEV 80 (316)
Q Consensus 1 ~~a~i~~TSGTTG~PK~V~~t~~~l~~~~~~~~~~~~~~~~d~~l~~~p~~h~~g~~~~~~~~l~~G~~~v~~~~~~~~~ 80 (316)
|+++|+|||||||.||+|.++|.++...+......+++.++|+++.++|++|.+++...++.++..|+++++... .
T Consensus 167 ~~a~i~~TSGtTG~PK~v~~s~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~G~~~~~~~~----~ 242 (513)
T PRK07656 167 DVADILFTSGTTGRPKGAMLTHRQLLSNAADWAEYLGLTEGDRYLAANPFFHVFGYKAGVNAPLMRGATILPLPV----F 242 (513)
T ss_pred ceEEEEeCCCCCCCCCEEEEecHHHHHHHHHHHHhhCCCCCCeEEEccchHHHHHHHHHHHHHHHcCceEEecCc----C
Confidence 579999999999999999999999998888888889999999999999999999998878999999999988643 2
Q ss_pred ChHHHHHHHhccceeeEEecccchhhHHhhHHhhh---hhcccccccc------------------cccccccchhccCC
Q psy14342 81 NPALWLSAVSQYRVRDTFCSYGMLAGIKMSHAAVT---SLCRSMKLAC------------------ELYPSRHIALCLDP 139 (316)
Q Consensus 81 ~~~~~~~~~~~~~~t~~~~~~~~~~~l~~~~~~~~---~~~~~~~ls~------------------e~~~~yG~te~~~~ 139 (316)
++..+++.++++++++++.+|.++..+........ ...+.+-..+ .+++.||+||++..
T Consensus 243 ~~~~~~~~i~~~~~t~~~~~p~~~~~l~~~~~~~~~~~~~l~~v~~~g~~~~~~~~~~~~~~~~~~~~~~~YG~tE~~~~ 322 (513)
T PRK07656 243 DPDEVFRLIETERITVLPGPPTMYNSLLQHPDRSAEDLSSLRLAVTGAASMPVALLERFESELGVDIVLTGYGLSEASGV 322 (513)
T ss_pred CHHHHHHHHHHhCCeEEechHHHHHHHHcCCCcCCCCccceeeEEecCCCCCHHHHHHHHHHcCCCceEeEEccccCCCc
Confidence 68899999999999999999988876554322110 0011111111 27889999999654
Q ss_pred CCCCCceEEEEeeeccCcccccCCCce-EEecCc-----------eEEecC---CCcccCCCcC-----------CCCce
Q psy14342 140 YCGLGFALWVLSSVYSGHHSILIPPSE-VEVNPA-----------LWLSAV---SQYRVRDTFC-----------SCNGA 193 (316)
Q Consensus 140 ~~~~~~~~~~~~~~~~g~~~~~~~g~~-~i~d~~-----------l~v~~~---~gY~~~~~~~-----------~~d~g 193 (316)
......... .....++.|.+++|.+ .++|++ |+++|+ .|||+++..+ ++|.|
T Consensus 323 ~~~~~~~~~--~~~~~~~vG~~~~~~~~~i~d~~~~~~~~g~~Gel~v~~~~~~~gy~~~~~~~~~~~~~~~~~~tGDl~ 400 (513)
T PRK07656 323 TTFNRLDDD--RKTVAGTIGTAIAGVENKIVNELGEEVPVGEVGELLVRGPNVMKGYYDDPEATAAAIDADGWLHTGDLG 400 (513)
T ss_pred eeecCcccc--ccccCCCccccCCCcEEEEECCCCCCCCCCCceEEEEEcchhhhhhcCCHHHHhhhhccCCceeccceE
Confidence 432221100 0011234556899999 887642 999999 8999876443 33666
Q ss_pred eeec-Cc---CCcccceeEECCcccChHhHHHHHHHhccccceeEEEeeC-----CcEEEEEEecC-CchhhcchHHHHH
Q psy14342 194 LYQG-AE---RLALDETIMLRGMRYHPIDIENSVMRAHKKIAECAVFTWT-----NLLVVVVELDG-NESEALDLVPLVT 263 (316)
Q Consensus 194 ~~~~-g~---~GR~dd~i~~~G~~v~p~eIE~~l~~~~p~v~~~~v~~~~-----~~~~~~v~~~~-~~~~~~~l~~~~~ 263 (316)
++++ |. .||.||+|+++|.+|+|.|||++|.+ +++|.+++|++.. +.+.++++..+ ...+..++.+.++
T Consensus 401 ~~~~~g~~~~~GR~~d~i~~~G~~v~~~~iE~~l~~-~~~i~~~~v~~~~~~~~g~~~~~~v~~~~~~~~~~~~l~~~~~ 479 (513)
T PRK07656 401 RLDEEGYLYIVDRKKDMFIVGGFNVYPAEVEEVLYE-HPAVAEAAVIGVPDERLGEVGKAYVVLKPGAELTEEELIAYCR 479 (513)
T ss_pred EEcCCeeEEEEecccceEEeCCEEeCHHHHHHHHHh-CCCeeEEEEEecCCcccCceEEEEEEECCCCCCCHHHHHHHHH
Confidence 6643 33 99999999999999999999999999 9999999999873 34566666554 2233456777777
Q ss_pred HHHHHhcCeeecEEEEEcCCCcccCCCchhhHHHHHH
Q psy14342 264 NAVLEEHHLIVGVAVVVDPGVVPINSRGEKQRMHLRD 300 (316)
Q Consensus 264 ~~l~~~~~~~~~~~~~~~~~~lP~t~~gKi~r~~l~~ 300 (316)
+.+. .+..| ..+.++. ++|+|++||++|++|++
T Consensus 480 ~~l~-~~~~p-~~i~~v~--~iP~t~~gK~~r~~l~~ 512 (513)
T PRK07656 480 EHLA-KYKVP-RSIEFLD--ELPKNATGKVLKRALRE 512 (513)
T ss_pred hhcc-cccCC-CEEEEec--CCCCCCccceeHHHHhc
Confidence 7766 44444 3566665 89999999999999875
|
|
| >PRK06814 acylglycerophosphoethanolamine acyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.8e-36 Score=305.47 Aligned_cols=290 Identities=11% Similarity=0.068 Sum_probs=212.5
Q ss_pred CeEEEEeccCCCCCceEEEEeHHHHHHHHHHHHHHhcCCCCCceEEecCCcCChhhhHHHHhhhhcCceeeeeCCccccc
Q psy14342 1 MLAYLDFSVSTTGMLAGIKMSHAAVTSLCRSMKLACELYPSRHIALCLDPYCGLGFALWVLSSVYSGHHSILIPPSEVEV 80 (316)
Q Consensus 1 ~~a~i~~TSGTTG~PK~V~~t~~~l~~~~~~~~~~~~~~~~d~~l~~~p~~h~~g~~~~~~~~l~~G~~~v~~~~~~~~~ 80 (316)
|+++|+|||||||.||||.+||+++..+.......+++.++|+++.++|++|.+|+...++.++..|+++++.+.. .
T Consensus 794 d~a~i~~TSGTTG~PKgv~~sh~~~~~~~~~~~~~~~~~~~d~~l~~~pl~h~~g~~~~~~~~l~~G~~~~~~~~~---~ 870 (1140)
T PRK06814 794 DPAVILFTSGSEGTPKGVVLSHRNLLANRAQVAARIDFSPEDKVFNALPVFHSFGLTGGLVLPLLSGVKVFLYPSP---L 870 (1140)
T ss_pred CcEEEEECCCccCCCcEEEecHHHHHHHHHHHHHhhCCCCcCEEEEecchHHHHHHHHHHHHHHHcCCEEEEecCc---c
Confidence 6799999999999999999999999998888888899999999999999999999977788999999999887532 1
Q ss_pred ChHHHHHHHhccceeeEEecccchhhHHhhHHhhh-hhcccccccc-----------------cccccccchhccCCCCC
Q psy14342 81 NPALWLSAVSQYRVRDTFCSYGMLAGIKMSHAAVT-SLCRSMKLAC-----------------ELYPSRHIALCLDPYCG 142 (316)
Q Consensus 81 ~~~~~~~~~~~~~~t~~~~~~~~~~~l~~~~~~~~-~~~~~~~ls~-----------------e~~~~yG~te~~~~~~~ 142 (316)
++..+.+.++++++|++..+|+++..+.......+ ...+.+-..+ ++++.||+||++.....
T Consensus 871 ~~~~~~~~i~~~~~t~~~~~p~~l~~l~~~~~~~~~~~lr~v~~gg~~l~~~~~~~~~~~~~~~~~~~YG~TE~~~~~~~ 950 (1140)
T PRK06814 871 HYRIIPELIYDTNATILFGTDTFLNGYARYAHPYDFRSLRYVFAGAEKVKEETRQTWMEKFGIRILEGYGVTETAPVIAL 950 (1140)
T ss_pred cHHHHHHHHHhcCCEEEEecHHHHHHHHhhcccccccceeEEEEcCCcCCHHHHHHHHHHhCCcEEeccccccccceEEe
Confidence 45567889999999999999988766544321111 0011111111 27889999998754322
Q ss_pred CCceEEEEeeeccCcccccCCCce-EEecC-------ceEEecC---CCcccCCCcC-----------CCCceeeec-Cc
Q psy14342 143 LGFALWVLSSVYSGHHSILIPPSE-VEVNP-------ALWLSAV---SQYRVRDTFC-----------SCNGALYQG-AE 199 (316)
Q Consensus 143 ~~~~~~~~~~~~~g~~~~~~~g~~-~i~d~-------~l~v~~~---~gY~~~~~~~-----------~~d~g~~~~-g~ 199 (316)
..+ .....++.|.++||++ ++.+. +|+++|+ .|||++++.. ++|.|++++ |.
T Consensus 951 ~~~-----~~~~~~~vG~p~~g~~~~~~~~~~~~~~Gel~v~g~~~~~gY~~~~~~~~~~~~~~g~~~TGDl~~~d~dG~ 1025 (1140)
T PRK06814 951 NTP-----MHNKAGTVGRLLPGIEYRLEPVPGIDEGGRLFVRGPNVMLGYLRAENPGVLEPPADGWYDTGDIVTIDEEGF 1025 (1140)
T ss_pred cCC-----CCCCCCcCCccCCCCeEEEeecCCCCCceEEEEeCCCcchhhcCCCCCCccccCCCCeEecCCEEEECCCCe
Confidence 211 0112234556899998 66542 2999999 8999875432 225555544 32
Q ss_pred ---CCcccceeEECCcccChHhHHHHHHHhccccceeEEEeeC-----CcEEEEEEecCCchhhcchHHHHHHHHHHhcC
Q psy14342 200 ---RLALDETIMLRGMRYHPIDIENSVMRAHKKIAECAVFTWT-----NLLVVVVELDGNESEALDLVPLVTNAVLEEHH 271 (316)
Q Consensus 200 ---~GR~dd~i~~~G~~v~p~eIE~~l~~~~p~v~~~~v~~~~-----~~~~~~v~~~~~~~~~~~l~~~~~~~l~~~~~ 271 (316)
.||.||+||++|++|+|.|||++|.+ |+.+.+++|+++. +++++++. ....+.+++.+.+++.....+.
T Consensus 1026 l~~~GR~~d~i~~~G~~v~~~eIE~~l~~-~~~v~~~~vv~~~~~~~g~~~~~~~~--~~~~~~~~l~~~~~~~~l~~~~ 1102 (1140)
T PRK06814 1026 ITIKGRAKRFAKIAGEMISLAAVEELAAE-LWPDALHAAVSIPDARKGERIILLTT--ASDATRAAFLAHAKAAGASELM 1102 (1140)
T ss_pred EEEEecccCeeeeCCEEECHHHHHHHHHh-cCCcccEEEEEcccCCCCceEEEEEc--CCCcCHHHHHHHHHHcCCCccc
Confidence 99999999999999999999999999 9999999999873 34444432 2223345666666654222454
Q ss_pred eeecEEEEEcCCCcccCCCchhhHHHHHHHHHc
Q psy14342 272 LIVGVAVVVDPGVVPINSRGEKQRMHLRDGFLA 304 (316)
Q Consensus 272 ~~~~~~~~~~~~~lP~t~~gKi~r~~l~~~~~~ 304 (316)
.| ..+.+++ ++|+|++||++|++|++...+
T Consensus 1103 ~P-~~i~~v~--~lP~t~~GKi~r~~L~~~~~~ 1132 (1140)
T PRK06814 1103 VP-AEIITID--EIPLLGTGKIDYVAVTKLAEE 1132 (1140)
T ss_pred CC-cEEEEec--CcCCCCCCCCcHHHHHHHHHH
Confidence 54 4555555 899999999999999988765
|
|
| >PRK04813 D-alanine--poly(phosphoribitol) ligase subunit 1; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.2e-35 Score=278.08 Aligned_cols=297 Identities=13% Similarity=0.126 Sum_probs=210.7
Q ss_pred CeEEEEeccCCCCCceEEEEeHHHHHHHHHHHHHHhcCCCCCceEEecCCcCChhhhHHHHhhhhcCceeeeeCCccccc
Q psy14342 1 MLAYLDFSVSTTGMLAGIKMSHAAVTSLCRSMKLACELYPSRHIALCLDPYCGLGFALWVLSSVYSGHHSILIPPSEVEV 80 (316)
Q Consensus 1 ~~a~i~~TSGTTG~PK~V~~t~~~l~~~~~~~~~~~~~~~~d~~l~~~p~~h~~g~~~~~~~~l~~G~~~v~~~~~~~~~ 80 (316)
++++++|||||||.||+|.++|+++...+......+++..+|+++.++|++|..++.. ++.++..|+++++.+.. ...
T Consensus 144 ~~~~i~~TSGTTG~PK~v~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~-~~~~l~~g~~~v~~~~~-~~~ 221 (503)
T PRK04813 144 DNYYIIFTSGTTGKPKGVQISHDNLVSFTNWMLEDFALPEGPQFLNQAPYSFDLSVMD-LYPTLASGGTLVALPKD-MTA 221 (503)
T ss_pred CcEEEEECCCCCCCCcEEEeehHHHHHHHHHHHHHcCCCcCceeeecCCcchhHhHHH-HHHHHhcCCEEEEcChh-hhc
Confidence 4789999999999999999999999988887778888889999999999999988866 78999999999987653 345
Q ss_pred ChHHHHHHHhccceeeEEecccchhhHHhhHHhhh---hhcccccccc------------------cccccccchhccCC
Q psy14342 81 NPALWLSAVSQYRVRDTFCSYGMLAGIKMSHAAVT---SLCRSMKLAC------------------ELYPSRHIALCLDP 139 (316)
Q Consensus 81 ~~~~~~~~~~~~~~t~~~~~~~~~~~l~~~~~~~~---~~~~~~~ls~------------------e~~~~yG~te~~~~ 139 (316)
++..+++.++++++++++.+|+++..+........ ...+.+-.++ .+++.||+||++..
T Consensus 222 ~~~~~~~~~~~~~~t~~~~~p~~~~~~~~~~~~~~~~~~~l~~i~~~G~~l~~~~~~~~~~~~~~~~~~~~yG~tE~~~~ 301 (503)
T PRK04813 222 NFKQLFETLPQLPINVWVSTPSFADMCLLDPSFNEEHLPNLTHFLFCGEELPHKTAKKLLERFPSATIYNTYGPTEATVA 301 (503)
T ss_pred CHHHHHHHHHHcCCeEEEeChHHHHHHHHhhccCcccCCCceEEEEecCcCCHHHHHHHHHHCCCceEEeCcccchheeE
Confidence 78899999999999999989988754433221100 0011111111 27889999998643
Q ss_pred CCCCCceEEEEeeeccCcccccCCCce-EEecCc-----------eEEecC---CCcccCCCcCC--------------C
Q psy14342 140 YCGLGFALWVLSSVYSGHHSILIPPSE-VEVNPA-----------LWLSAV---SQYRVRDTFCS--------------C 190 (316)
Q Consensus 140 ~~~~~~~~~~~~~~~~g~~~~~~~g~~-~i~d~~-----------l~v~~~---~gY~~~~~~~~--------------~ 190 (316)
.................+.+.+++|.+ ++.|++ |+++|+ .|||++++.+. +
T Consensus 302 ~~~~~~~~~~~~~~~~~~~g~~~~~~~~~i~d~~~~~~~~g~~Gel~v~~~~~~~gy~~~~~~~~~~~~~~~g~~~~~tG 381 (503)
T PRK04813 302 VTSIEITDEMLDQYKRLPIGYAKPDSPLLIIDEEGTKLPDGEQGEIVISGPSVSKGYLNNPEKTAEAFFTFDGQPAYHTG 381 (503)
T ss_pred EEEEEecccccccCCCCcccccCCCCEEEEECCCCCCCCCCCceEEEEeccccccccCCChhHhHHhhccCCCceeEECC
Confidence 211000000000011123445788888 776543 899998 89999876442 2
Q ss_pred CceeeecCc---CCcccceeEECCcccChHhHHHHHHHhccccceeEEEeeC-----CcEEEEEEecCCchh-hcchHHH
Q psy14342 191 NGALYQGAE---RLALDETIMLRGMRYHPIDIENSVMRAHKKIAECAVFTWT-----NLLVVVVELDGNESE-ALDLVPL 261 (316)
Q Consensus 191 d~g~~~~g~---~GR~dd~i~~~G~~v~p~eIE~~l~~~~p~v~~~~v~~~~-----~~~~~~v~~~~~~~~-~~~l~~~ 261 (316)
|.|++.+|. .||.||+|+++|++|+|.|||++|.+ ||+|.+++|++.. +.+++++...+...+ ..++.+.
T Consensus 382 D~~~~~~g~~~~~GR~~d~i~~~G~~v~~~~iE~~l~~-~~~v~~~~v~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~ 460 (503)
T PRK04813 382 DAGYLEDGLLFYQGRIDFQIKLNGYRIELEEIEQNLRQ-SSYVESAVVVPYNKDHKVQYLIAYVVPKEEDFEREFELTKA 460 (503)
T ss_pred ceEEeeCCeEEEeccccceEEECcEEeCHHHHHHHHHh-CCCcceEEEEEeeCCCCccEEEEEEEeccccccccchhHHH
Confidence 555553343 89999999999999999999999999 9999999999863 356666665543222 2234444
Q ss_pred HHHHHHHh---cCeeecEEEEEcCCCcccCCCchhhHHHHHHHHH
Q psy14342 262 VTNAVLEE---HHLIVGVAVVVDPGVVPINSRGEKQRMHLRDGFL 303 (316)
Q Consensus 262 ~~~~l~~~---~~~~~~~~~~~~~~~lP~t~~gKi~r~~l~~~~~ 303 (316)
+++.+.+. +..| ..+.++ +.+|+|++||++|++|++.+.
T Consensus 461 l~~~~~~~l~~~~~P-~~i~~~--~~~P~t~~gKv~r~~l~~~~~ 502 (503)
T PRK04813 461 IKKELKERLMEYMIP-RKFIYR--DSLPLTPNGKIDRKALIEEVN 502 (503)
T ss_pred HHHHHHhhCccccCC-eEEEEe--ccCCCCCCCCCcHHHHHHHhc
Confidence 55554433 3333 344444 489999999999999998875
|
|
| >COG1021 EntE Peptide arylation enzymes [Secondary metabolites biosynthesis, transport, and catabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.2e-37 Score=262.56 Aligned_cols=285 Identities=17% Similarity=0.170 Sum_probs=227.0
Q ss_pred CeEEEEeccCCCCCceEEEEeHHHHHHHHHHHHHHhcCCCCCceEEecCCcCChhhhHH-HHhhhhcCceeeeeCCcccc
Q psy14342 1 MLAYLDFSVSTTGMLAGIKMSHAAVTSLCRSMKLACELYPSRHIALCLDPYCGLGFALW-VLSSVYSGHHSILIPPSEVE 79 (316)
Q Consensus 1 ~~a~i~~TSGTTG~PK~V~~t~~~l~~~~~~~~~~~~~~~~d~~l~~~p~~h~~g~~~~-~~~~l~~G~~~v~~~~~~~~ 79 (316)
++|+.+.+.||||.||.+..||.....++.+-...++++..++.++.+|..|.+-+... +++.++.|+++|+.+..
T Consensus 190 ~vA~fqLSGGTTGtPKLIPRtH~DY~Ysv~aSaEiC~~~~~tvyL~~LP~AHNfplssPG~LGv~~agG~VVla~~p--- 266 (542)
T COG1021 190 EVAFFQLSGGTTGTPKLIPRTHNDYYYSVRASAEICGFDQQTVYLCALPAAHNFPLSSPGALGVFLAGGTVVLAPDP--- 266 (542)
T ss_pred ceEEEEecCCCCCCCccccccccceeeeeeehhhhhCcCccceEEEecccccCCCCCCcchhheeeeccEEEECCCC---
Confidence 47999999999999999999999888888888888999999999999999999887543 78999999999997533
Q ss_pred cChHHHHHHHhccceeeEEecccchhhHHhhHHhhhhhcccccccc-------------------------cccccccch
Q psy14342 80 VNPALWLSAVSQYRVRDTFCSYGMLAGIKMSHAAVTSLCRSMKLAC-------------------------ELYPSRHIA 134 (316)
Q Consensus 80 ~~~~~~~~~~~~~~~t~~~~~~~~~~~l~~~~~~~~~~~~~~~ls~-------------------------e~~~~yG~t 134 (316)
+|...+.+++++++|++-.+|+....+.+..+. +..++|+ .+.+.|||+
T Consensus 267 -sp~~~F~lIerh~Vt~tALVPpla~LWlqa~e~-----~~~~LsSLrllQVGGarl~~~~Arrv~~~lgC~LQQVFGMA 340 (542)
T COG1021 267 -SPELCFPLIERHGVTVTALVPPLASLWLQAAEW-----ERADLSSLRLLQVGGARLSATLARRVPAVLGCQLQQVFGMA 340 (542)
T ss_pred -CHHHHHHHHHHhccceEEeccHHHHHHHHhhhc-----ccCCchheeEEeecCcccCHHHHhhchhhhCchHHHHhhhh
Confidence 688899999999999998888876444444333 2333333 288899999
Q ss_pred hccCCCCCCC--ceEEEEeeeccCcccccC-CCce-EEecCc-----------eEEecC---CCcccCCCcCCC---Cce
Q psy14342 135 LCLDPYCGLG--FALWVLSSVYSGHHSILI-PPSE-VEVNPA-----------LWLSAV---SQYRVRDTFCSC---NGA 193 (316)
Q Consensus 135 e~~~~~~~~~--~~~~~~~~~~~g~~~~~~-~g~~-~i~d~~-----------l~v~~~---~gY~~~~~~~~~---d~g 193 (316)
|-.-.|+-.. ++. -....| .|+ |.-+ +++|.+ |..||| .|||.-|+.... ..|
T Consensus 341 EGLvnyTRLDDp~E~---i~~TQG---rPlsP~DEvrvvD~dg~pv~pGE~G~LltRGPYTirGYyrap~HNa~aF~a~G 414 (542)
T COG1021 341 EGLVNYTRLDDPPEI---IIHTQG---RPLSPDDEVRVVDADGNPVAPGEVGELLTRGPYTIRGYYRAPEHNARAFDADG 414 (542)
T ss_pred hhhhcccccCCchHh---eeecCC---CcCCCcceeEEecCCCCCCCCCCcceeeecCCeeeeeeccCchhhhhccCcCC
Confidence 8765554221 111 112233 244 4445 888765 999999 999987655433 345
Q ss_pred eeec---------Cc---CCcccceeEECCcccChHhHHHHHHHhccccceeEEEee-----CCcEEEEEEecCCchhhc
Q psy14342 194 LYQG---------AE---RLALDETIMLRGMRYHPIDIENSVMRAHKKIAECAVFTW-----TNLLVVVVELDGNESEAL 256 (316)
Q Consensus 194 ~~~~---------g~---~GR~dd~i~~~G~~v~p~eIE~~l~~~~p~v~~~~v~~~-----~~~~~~~v~~~~~~~~~~ 256 (316)
|+.. |. .||.||+||.+|+||..+|||+.|.+ ||.|.+|++|+. ||+.++++.+++......
T Consensus 415 FYrsGD~V~~~~dGyl~V~GR~KDQINRgGEKIAAeEvEn~LL~-HP~V~~AAlVampDelLGEksCAfiv~~~~~~~~~ 493 (542)
T COG1021 415 FYRSGDLVRRDPDGYLVVEGRVKDQINRGGEKIAAEEVENLLLR-HPAVHDAALVAMPDELLGEKSCAFIVVKEPPLRAA 493 (542)
T ss_pred ceecCceeEecCCceEEEEeeehhhhccccchhhHHHHHHHHhh-CchhhhhhhhcCchhhcCcceeEEEEecCCCCCHH
Confidence 5533 32 99999999999999999999999999 999999999998 578999998888776777
Q ss_pred chHHHHHHHHHHhcCeeecEEEEEcCCCcccCCCchhhHHHHHHHHHc
Q psy14342 257 DLVPLVTNAVLEEHHLIVGVAVVVDPGVVPINSRGEKQRMHLRDGFLA 304 (316)
Q Consensus 257 ~l~~~~~~~l~~~~~~~~~~~~~~~~~~lP~t~~gKi~r~~l~~~~~~ 304 (316)
++.+.+++.-...+++| .++++++ ++|.|+-|||+|++|++++..
T Consensus 494 qlr~~L~~~GlAa~K~P-Drie~v~--~~P~T~VGKIdKk~Lr~~l~~ 538 (542)
T COG1021 494 QLRRFLRERGLAAFKLP-DRIEFVD--SLPLTAVGKIDKKALRRRLAS 538 (542)
T ss_pred HHHHHHHHcchhhhcCC-cceeecc--cCCCcccccccHHHHHHHhhh
Confidence 88898988766678886 7899988 999999999999999998875
|
|
| >PRK12316 peptide synthase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.2e-36 Score=338.99 Aligned_cols=293 Identities=17% Similarity=0.147 Sum_probs=222.4
Q ss_pred CeEEEEeccCCCCCceEEEEeHHHHHHHHHHHHHHhcCCCCCceEEecCCcCChhhhHHHHhhhhcCceeeeeCCccccc
Q psy14342 1 MLAYLDFSVSTTGMLAGIKMSHAAVTSLCRSMKLACELYPSRHIALCLDPYCGLGFALWVLSSVYSGHHSILIPPSEVEV 80 (316)
Q Consensus 1 ~~a~i~~TSGTTG~PK~V~~t~~~l~~~~~~~~~~~~~~~~d~~l~~~p~~h~~g~~~~~~~~l~~G~~~v~~~~~~~~~ 80 (316)
|+|||+|||||||.||||+++|+++...+......+++.++|+++...|++|+++++. ++.++..|+++++.++.. ..
T Consensus 656 ~~a~ii~TSGSTG~PKgV~~~h~~l~~~~~~~~~~~~~~~~d~~l~~~p~~fd~~~~~-~~~~L~~G~~l~i~~~~~-~~ 733 (5163)
T PRK12316 656 NLAYVIYTSGSTGKPKGAGNRHRALSNRLCWMQQAYGLGVGDTVLQKTPFSFDVSVWE-FFWPLMSGARLVVAAPGD-HR 733 (5163)
T ss_pred CeEEEEECCCcCCCCCEeeEcCHHHHHHHHHHHHhcCCCCCCEEEeeCCeehHHHHHH-HHHHHhCCCEEEECCccc-cC
Confidence 5799999999999999999999999999999999999999999999999999999876 899999999999986543 34
Q ss_pred ChHHHHHHHhccceeeEEecccchhhHHhhHHhhh-hhcccccccc------------------cccccccchhccCCCC
Q psy14342 81 NPALWLSAVSQYRVRDTFCSYGMLAGIKMSHAAVT-SLCRSMKLAC------------------ELYPSRHIALCLDPYC 141 (316)
Q Consensus 81 ~~~~~~~~~~~~~~t~~~~~~~~~~~l~~~~~~~~-~~~~~~~ls~------------------e~~~~yG~te~~~~~~ 141 (316)
+|..+++.++++++|++..+|+++..+........ ...+.+-+++ .+++.||+||++....
T Consensus 734 ~~~~~~~~i~~~~vt~~~~~Ps~~~~l~~~~~~~~~~~l~~~~~gGe~l~~~~~~~~~~~~~~~~l~n~YG~TE~~~~~~ 813 (5163)
T PRK12316 734 DPAKLVELINREGVDTLHFVPSMLQAFLQDEDVASCTSLRRIVCSGEALPADAQEQVFAKLPQAGLYNLYGPTEAAIDVT 813 (5163)
T ss_pred CHHHHHHHHHHcCCeEEEeCHHHHHHHHhccccccCCCccEEEEeeccCCHHHHHHHHHhCCCCeEEeCcCcChheeeee
Confidence 78899999999999999999999876643221100 0111222222 2889999999873221
Q ss_pred CCCceEEEEeeeccCcccccCCCce-EEecCc-----------eEEecC---CCcccCCCcCCC----------------
Q psy14342 142 GLGFALWVLSSVYSGHHSILIPPSE-VEVNPA-----------LWLSAV---SQYRVRDTFCSC---------------- 190 (316)
Q Consensus 142 ~~~~~~~~~~~~~~g~~~~~~~g~~-~i~d~~-----------l~v~~~---~gY~~~~~~~~~---------------- 190 (316)
..... .......+.|.|++|++ +++|++ |+++|+ .||+++++.+..
T Consensus 814 ~~~~~---~~~~~~~~iG~p~~~~~~~i~d~~~~~~p~G~~GEl~i~G~~v~~GYl~~~~~t~~~f~~~~~~~~~~~y~T 890 (5163)
T PRK12316 814 HWTCV---EEGGDSVPIGRPIANLACYILDANLEPVPVGVLGELYLAGRGLARGYHGRPGLTAERFVPSPFVAGERMYRT 890 (5163)
T ss_pred EEecc---cccCCCCCCccccCCCEEEEECCCCCCCCCCCceEEEecccccChhhCCChhhhhhhCCCCCCCCCCeeEec
Confidence 11100 01111224556899999 888864 999999 999998876532
Q ss_pred -Cceeeec-Cc---CCcccceeEECCcccChHhHHHHHHHhccccceeEEEeeC-CcEEEEEEecCCc-hhhcchHHHHH
Q psy14342 191 -NGALYQG-AE---RLALDETIMLRGMRYHPIDIENSVMRAHKKIAECAVFTWT-NLLVVVVELDGNE-SEALDLVPLVT 263 (316)
Q Consensus 191 -d~g~~~~-g~---~GR~dd~i~~~G~~v~p~eIE~~l~~~~p~v~~~~v~~~~-~~~~~~v~~~~~~-~~~~~l~~~~~ 263 (316)
|.|++++ |. +||.||+||++|+||.|.|||++|.+ ||.|.+|+|++.+ +.++++++..... ...+++.+.++
T Consensus 891 GDl~~~~~dG~l~~~GR~d~~ik~~G~rI~~~EIE~~l~~-~p~V~~a~V~~~~~~~lva~vv~~~~~~~~~~~l~~~l~ 969 (5163)
T PRK12316 891 GDLARYRADGVIEYAGRIDHQVKLRGLRIELGEIEARLLE-HPWVREAAVLAVDGKQLVGYVVLESEGGDWREALKAHLA 969 (5163)
T ss_pred CccEEECCCCCEEeecccCCEEEEceEEcChHHHHHHHHh-CCCcceEEEEEcCCCeEEEEEEccCCCCCCHHHHHHHHH
Confidence 4444443 33 99999999999999999999999999 9999999999985 5678777765532 23356677777
Q ss_pred HHHHHhcCeeecEEEEEcCCCcccCCCchhhHHHHHHHHH
Q psy14342 264 NAVLEEHHLIVGVAVVVDPGVVPINSRGEKQRMHLRDGFL 303 (316)
Q Consensus 264 ~~l~~~~~~~~~~~~~~~~~~lP~t~~gKi~r~~l~~~~~ 303 (316)
+.+. .+..| ..+.+++ +||+|++||++|++|.+...
T Consensus 970 ~~Lp-~y~vP-~~i~~v~--~lP~t~~GKidr~~L~~~~~ 1005 (5163)
T PRK12316 970 ASLP-EYMVP-AQWLALE--RLPLTPNGKLDRKALPAPEA 1005 (5163)
T ss_pred hhCC-CccCC-CeEEEHh--hCCCCCCCChhHHhhcCccc
Confidence 6666 44444 3455554 89999999999999986543
|
|
| >PRK12492 long-chain-fatty-acid--CoA ligase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-35 Score=283.20 Aligned_cols=289 Identities=16% Similarity=0.184 Sum_probs=207.7
Q ss_pred CeEEEEeccCCCCCceEEEEeHHHHHHHHHHHHHHhc---------CCC-CCceEEecCCcCChhhhHHHHhhhhcCcee
Q psy14342 1 MLAYLDFSVSTTGMLAGIKMSHAAVTSLCRSMKLACE---------LYP-SRHIALCLDPYCGLGFALWVLSSVYSGHHS 70 (316)
Q Consensus 1 ~~a~i~~TSGTTG~PK~V~~t~~~l~~~~~~~~~~~~---------~~~-~d~~l~~~p~~h~~g~~~~~~~~l~~G~~~ 70 (316)
|+++|+|||||||.||+|+++|+++..++......+. +.. +++++.++|++|.+|+...++..+..|+++
T Consensus 208 ~~a~i~~TSGTTG~PKgv~~s~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pl~~~~g~~~~~~~~~~~g~~~ 287 (562)
T PRK12492 208 DIAVLQYTGGTTGLAKGAMLTHGNLVANMLQVRACLSQLGPDGQPLMKEGQEVMIAPLPLYHIYAFTANCMCMMVSGNHN 287 (562)
T ss_pred CeEEEEeCCCCCCCCceEEEechhHHHHHHHHHHHHhcccccccccccCCCeEEEEecchHHHHHHHHHHHHHhhcCceE
Confidence 5799999999999999999999999877766655543 223 356788899999999887777888889887
Q ss_pred eeeCCcccccChHHHHHHHhccceeeEEecccchhhHHhhHHhhhhhccccc--c-cc-----------------ccccc
Q psy14342 71 ILIPPSEVEVNPALWLSAVSQYRVRDTFCSYGMLAGIKMSHAAVTSLCRSMK--L-AC-----------------ELYPS 130 (316)
Q Consensus 71 v~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~~~l~~~~~~~~~~~~~~~--l-s~-----------------e~~~~ 130 (316)
++.... .++..+++.++++++++++..|+.+..+.............+. + .+ .+++.
T Consensus 288 ~~~~~~---~~~~~~~~~i~~~~~t~~~~~p~~~~~l~~~~~~~~~~~~~lr~~~~gG~~~~~~~~~~~~~~~~~~~~~~ 364 (562)
T PRK12492 288 VLITNP---RDIPGFIKELGKWRFSALLGLNTLFVALMDHPGFKDLDFSALKLTNSGGTALVKATAERWEQLTGCTIVEG 364 (562)
T ss_pred EEecCC---cCHHHHHHHHHHhCCceeeCcHHHHHHHHhCcCcccccccceeEEEeccccCCHHHHHHHHHHhCCceeec
Confidence 765432 2578899999999999999889887655443221000001111 1 11 28889
Q ss_pred ccchhccCCCCCCCceEEEEeeeccCcccccCCCce-EEecCc-----------eEEecC---CCcccCCCcCCC-----
Q psy14342 131 RHIALCLDPYCGLGFALWVLSSVYSGHHSILIPPSE-VEVNPA-----------LWLSAV---SQYRVRDTFCSC----- 190 (316)
Q Consensus 131 yG~te~~~~~~~~~~~~~~~~~~~~g~~~~~~~g~~-~i~d~~-----------l~v~~~---~gY~~~~~~~~~----- 190 (316)
||+||++......+.. .....+..+.+++|.+ +++|++ |+++|+ .|||++++.+..
T Consensus 365 YG~tE~~~~~~~~~~~----~~~~~~~~G~p~~~~~v~ivd~~~~~~~~g~~Gel~v~g~~~~~gY~~~~~~t~~~~~~~ 440 (562)
T PRK12492 365 YGLTETSPVASTNPYG----ELARLGTVGIPVPGTALKVIDDDGNELPLGERGELCIKGPQVMKGYWQQPEATAEALDAE 440 (562)
T ss_pred cCccccCceeeecCCc----ccccCCccceecCCCEEEEECCCCCCCCCCCceEEEEeCCccccccccCchhhhhcccCC
Confidence 9999986433221110 0111234456899999 888864 999998 899998765432
Q ss_pred ------Cceeeec-Cc---CCcccceeEECCcccChHhHHHHHHHhccccceeEEEeeC-----CcEEEEEEecCCchhh
Q psy14342 191 ------NGALYQG-AE---RLALDETIMLRGMRYHPIDIENSVMRAHKKIAECAVFTWT-----NLLVVVVELDGNESEA 255 (316)
Q Consensus 191 ------d~g~~~~-g~---~GR~dd~i~~~G~~v~p~eIE~~l~~~~p~v~~~~v~~~~-----~~~~~~v~~~~~~~~~ 255 (316)
|.|++++ |. .||.||+||++|++|+|.|||+.|.+ ||.|.+++|++.. +.+++++.......+.
T Consensus 441 g~~~TGD~g~~~~~G~l~i~GR~~~~i~~~G~~i~~~eIE~~l~~-~~~v~~~~v~~~~~~~~~~~~~~~v~~~~~~~~~ 519 (562)
T PRK12492 441 GWFKTGDIAVIDPDGFVRIVDRKKDLIIVSGFNVYPNEIEDVVMA-HPKVANCAAIGVPDERSGEAVKLFVVARDPGLSV 519 (562)
T ss_pred CceecCcEEEECCCCeEEEecccCCeEEECCEEECHHHHHHHHHh-CCCeeEEEEEeccCCCCCceEEEEEEeCCCCCCH
Confidence 5555543 33 89999999999999999999999999 9999999999873 3566666555443344
Q ss_pred cchHHHHHHHHHHhcCeeecEEEEEcCCCcccCCCchhhHHHHHHH
Q psy14342 256 LDLVPLVTNAVLEEHHLIVGVAVVVDPGVVPINSRGEKQRMHLRDG 301 (316)
Q Consensus 256 ~~l~~~~~~~l~~~~~~~~~~~~~~~~~~lP~t~~gKi~r~~l~~~ 301 (316)
+++.+.+++.+. .+..| ..+.+++ ++|+|++||++|++|++.
T Consensus 520 ~~i~~~~~~~l~-~~~~P-~~i~~~~--~~P~t~~GK~~r~~L~~~ 561 (562)
T PRK12492 520 EELKAYCKENFT-GYKVP-KHIVLRD--SLPMTPVGKILRRELRDI 561 (562)
T ss_pred HHHHHHHHHhcc-cccCC-cEEEEec--cCCCCCCCceeHHHHHhh
Confidence 567777777766 45554 3455554 899999999999999864
|
|
| >PRK07008 long-chain-fatty-acid--CoA ligase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.2e-35 Score=280.67 Aligned_cols=296 Identities=17% Similarity=0.123 Sum_probs=210.8
Q ss_pred CeEEEEeccCCCCCceEEEEeHHHHHHHHH--HHHHHhcCCCCCceEEecCCcCChhhhHHHHhhhhcCceeeeeCCccc
Q psy14342 1 MLAYLDFSVSTTGMLAGIKMSHAAVTSLCR--SMKLACELYPSRHIALCLDPYCGLGFALWVLSSVYSGHHSILIPPSEV 78 (316)
Q Consensus 1 ~~a~i~~TSGTTG~PK~V~~t~~~l~~~~~--~~~~~~~~~~~d~~l~~~p~~h~~g~~~~~~~~l~~G~~~v~~~~~~~ 78 (316)
++++++|||||||.||+|++||+++..+.. .+...++++++|+++.++|++|.+++.. ++.++..|+++++..+.
T Consensus 177 ~~~~i~~TSGTTG~PK~v~~s~~~~~~~~~~~~~~~~~~~~~~d~~l~~~p~~h~~~~~~-~~~~l~~G~~~~~~~~~-- 253 (539)
T PRK07008 177 QASSLCYTSGTTGNPKGALYSHRSTVLHAYGAALPDAMGLSARDAVLPVVPMFHVNAWGL-PYSAPLTGAKLVLPGPD-- 253 (539)
T ss_pred cceEEEECCCCCCCCcEEEEecHHHHHHHHHhhcccccCCCCCceEEecCchHHhhhHHH-HHHHHhcCceEEEecCC--
Confidence 468999999999999999999999875432 2334677888999999999999877755 67888999999987543
Q ss_pred ccChHHHHHHHhccceeeEEecccchhhHHhhHHhhh---hhcccccccc-----------------cccccccchhccC
Q psy14342 79 EVNPALWLSAVSQYRVRDTFCSYGMLAGIKMSHAAVT---SLCRSMKLAC-----------------ELYPSRHIALCLD 138 (316)
Q Consensus 79 ~~~~~~~~~~~~~~~~t~~~~~~~~~~~l~~~~~~~~---~~~~~~~ls~-----------------e~~~~yG~te~~~ 138 (316)
.++..+++.++++++|++..+|+.+..+........ ...+.+-.++ .+++.||+||++.
T Consensus 254 -~~~~~~~~~l~~~~vt~~~~~P~~~~~l~~~~~~~~~~~~~l~~~~~~G~~l~~~~~~~~~~~~~~~l~~~YG~tE~~~ 332 (539)
T PRK07008 254 -LDGKSLYELIEAERVTFSAGVPTVWLGLLNHMREAGLRFSTLRRTVIGGSACPPAMIRTFEDEYGVEVIHAWGMTEMSP 332 (539)
T ss_pred -cCHHHHHHHHHHcCCEEEEechHHHHHHHhcccccCCCcccceEEEEcCCCCCHHHHHHHHHHhCCceecccccccccc
Confidence 268899999999999999999988765544322110 0011111111 2889999999975
Q ss_pred CCCCCCceE---EE--E-eeeccCcccccCCCce-EEecCc-------------eEEecC---CCcccCCCc-------C
Q psy14342 139 PYCGLGFAL---WV--L-SSVYSGHHSILIPPSE-VEVNPA-------------LWLSAV---SQYRVRDTF-------C 188 (316)
Q Consensus 139 ~~~~~~~~~---~~--~-~~~~~g~~~~~~~g~~-~i~d~~-------------l~v~~~---~gY~~~~~~-------~ 188 (316)
......... .. . .....+..|.++||++ +++|++ |+++|+ .|||+++.. .
T Consensus 333 ~~~~~~~~~~~~~~~~~~~~~~~~~~G~p~pg~~~~i~d~~~~~~~~~~~~~Gei~v~g~~~~~gy~~~~~~~~~~g~~~ 412 (539)
T PRK07008 333 LGTLCKLKWKHSQLPLDEQRKLLEKQGRVIYGVDMKIVGDDGRELPWDGKAFGDLQVRGPWVIDRYFRGDASPLVDGWFP 412 (539)
T ss_pred cceecccccccccCCchhhhhhcccCCccccceEEEEECCCCCccCCCCCcceEEEEeCCccchhhcCChhhhhcCCCcc
Confidence 322211100 00 0 0000123445789988 777642 889998 899998632 2
Q ss_pred CCCceeeec-Cc---CCcccceeEECCcccChHhHHHHHHHhccccceeEEEeeC-----CcEEEEEEecCCc-hhhcch
Q psy14342 189 SCNGALYQG-AE---RLALDETIMLRGMRYHPIDIENSVMRAHKKIAECAVFTWT-----NLLVVVVELDGNE-SEALDL 258 (316)
Q Consensus 189 ~~d~g~~~~-g~---~GR~dd~i~~~G~~v~p~eIE~~l~~~~p~v~~~~v~~~~-----~~~~~~v~~~~~~-~~~~~l 258 (316)
++|.|++++ |. .||.||+||++|++|+|.|||++|.. ||.|.++++++.. +.+++++...+.. .+.+++
T Consensus 413 TGD~~~~~~dg~l~~~GR~~d~i~~~G~~v~p~eIE~~l~~-~p~v~~~~v~~~~~~~~~~~~~~~v~~~~~~~~~~~~l 491 (539)
T PRK07008 413 TGDVATIDADGFMQITDRSKDVIKSGGEWISSIDIENVAVA-HPAVAEAACIACAHPKWDERPLLVVVKRPGAEVTREEL 491 (539)
T ss_pred cCceEEEcCCCcEEEeecccCEEEeCCeEEcHHHHHHHHHh-CCceeEEEEEecCCchhccceEEEEEeCCCCccCHHHH
Confidence 336666654 32 99999999999999999999999999 9999999999873 3566666555432 234577
Q ss_pred HHHHHHHHHHhcCeeecEEEEEcCCCcccCCCchhhHHHHHHHHHcC
Q psy14342 259 VPLVTNAVLEEHHLIVGVAVVVDPGVVPINSRGEKQRMHLRDGFLAD 305 (316)
Q Consensus 259 ~~~~~~~l~~~~~~~~~~~~~~~~~~lP~t~~gKi~r~~l~~~~~~~ 305 (316)
.+++++++. .+..| ..+.+++ ++|+|++||++|++|++.+.+-
T Consensus 492 ~~~~~~~l~-~~~~P-~~i~~v~--~lP~t~sgKi~r~~l~~~~~~~ 534 (539)
T PRK07008 492 LAFYEGKVA-KWWIP-DDVVFVD--AIPHTATGKLQKLKLREQFRDY 534 (539)
T ss_pred HHHHHhhcc-cccCC-eEEEEec--CCCCCCccceeHHHHHHHHHhh
Confidence 787877776 44444 3555554 8999999999999999988763
|
|
| >PLN02387 long-chain-fatty-acid-CoA ligase family protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.5e-36 Score=291.88 Aligned_cols=303 Identities=11% Similarity=0.029 Sum_probs=205.7
Q ss_pred CeEEEEeccCCCCCceEEEEeHHHHHHHHHHHHHHh-cCCCCCceEEecCCcCChhhhHHHHhhhhcCceeeeeCCcccc
Q psy14342 1 MLAYLDFSVSTTGMLAGIKMSHAAVTSLCRSMKLAC-ELYPSRHIALCLDPYCGLGFALWVLSSVYSGHHSILIPPSEVE 79 (316)
Q Consensus 1 ~~a~i~~TSGTTG~PK~V~~t~~~l~~~~~~~~~~~-~~~~~d~~l~~~p~~h~~g~~~~~~~~l~~G~~~v~~~~~~~~ 79 (316)
|+++|+|||||||.||||++||+++..++......+ ++.++|++++++|++|++++.. .+..+..|+++.+..+..+.
T Consensus 251 d~a~I~yTSGTTG~PKGV~lth~~l~~~~~~~~~~~~~~~~~d~~l~~lPl~Hi~~~~~-~~~~~~~g~~i~~g~~~~l~ 329 (696)
T PLN02387 251 DIAVIMYTSGSTGLPKGVMMTHGNIVATVAGVMTVVPKLGKNDVYLAYLPLAHILELAA-ESVMAAVGAAIGYGSPLTLT 329 (696)
T ss_pred ceEEEEecCCCCCCCCEEEEEcHHHHHHHHHHHhhcCCCCCCCEEEEECcHHHHHHHHH-HHHHHHhCCEEEECChhhhc
Confidence 679999999999999999999999998877766554 5788999999999999999876 44456677766654332211
Q ss_pred cC----hHHHHHHHhccceeeEEecccchhhHHhhHHhh-----------------------------------------
Q psy14342 80 VN----PALWLSAVSQYRVRDTFCSYGMLAGIKMSHAAV----------------------------------------- 114 (316)
Q Consensus 80 ~~----~~~~~~~~~~~~~t~~~~~~~~~~~l~~~~~~~----------------------------------------- 114 (316)
.. +..++..++++++|++..+|.++..+.......
T Consensus 330 ~~~~~~~~~~~~~i~~~~pT~~~~vP~~l~~l~~~~~~~~~~~~~~~~~l~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~ 409 (696)
T PLN02387 330 DTSNKIKKGTKGDASALKPTLMTAVPAILDRVRDGVRKKVDAKGGLAKKLFDIAYKRRLAAIEGSWFGAWGLEKLLWDAL 409 (696)
T ss_pred ccccccccCchhhHHHhCCcEEEehhHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHhccCCcccccccchhhHHH
Confidence 10 223467889999999999998887554321100
Q ss_pred -----hhhc-cccc--ccc------------------cccccccchhccCCCCCCCceEEEEeeeccCcccccCCCce-E
Q psy14342 115 -----TSLC-RSMK--LAC------------------ELYPSRHIALCLDPYCGLGFALWVLSSVYSGHHSILIPPSE-V 167 (316)
Q Consensus 115 -----~~~~-~~~~--ls~------------------e~~~~yG~te~~~~~~~~~~~~~~~~~~~~g~~~~~~~g~~-~ 167 (316)
.... ..++ +++ .+.+.||+||++.......+ .....|..|.|+||++ +
T Consensus 410 ~~~~~~~~lg~~lr~i~~GGapl~~~~~~~~~~~~g~~v~~~YG~TEt~~~~~~~~~-----~~~~~gsvG~p~p~~evk 484 (696)
T PLN02387 410 VFKKIRAVLGGRIRFMLSGGAPLSGDTQRFINICLGAPIGQGYGLTETCAGATFSEW-----DDTSVGRVGPPLPCCYVK 484 (696)
T ss_pred HHHHHHHHhCCcEEEEEEcCCCCCHHHHHHHHHHcCCCeeEeechhhcccceeecCc-----ccCCCCccCCCCCceEEE
Confidence 0000 0111 111 27889999999754433322 1122344556899999 8
Q ss_pred Eec---------------CceEEecC---CCcccCCCcCCC---------------Cceeeec-Cc---CCcccceeEE-
Q psy14342 168 EVN---------------PALWLSAV---SQYRVRDTFCSC---------------NGALYQG-AE---RLALDETIML- 209 (316)
Q Consensus 168 i~d---------------~~l~v~~~---~gY~~~~~~~~~---------------d~g~~~~-g~---~GR~dd~i~~- 209 (316)
++| ++|+++|| .|||++++.+.+ |.|++++ |. +||.||+||+
T Consensus 485 ivd~~~~~~~~~~~~~p~GEi~vrGp~v~~GY~~~pe~T~~~f~~d~~G~~W~~TGDig~~d~dG~l~i~gR~kd~ik~~ 564 (696)
T PLN02387 485 LVSWEEGGYLISDKPMPRGEIVIGGPSVTLGYFKNQEKTDEVYKVDERGMRWFYTGDIGQFHPDGCLEIIDRKKDIVKLQ 564 (696)
T ss_pred EeeccccCcccCCCCCCCceEEeccCcccchhcCCHHHHhhhhccccCCCceeecCceEEECCCCcEEEEEcccceEECC
Confidence 876 22999999 999999876543 3333332 32 9999999997
Q ss_pred CCcccChHhHHHHHHHhccccceeEEEeeCC--cEEEEEEecCCch------------h------hcchHHHHHHHHHH-
Q psy14342 210 RGMRYHPIDIENSVMRAHKKIAECAVFTWTN--LLVVVVELDGNES------------E------ALDLVPLVTNAVLE- 268 (316)
Q Consensus 210 ~G~~v~p~eIE~~l~~~~p~v~~~~v~~~~~--~~~~~v~~~~~~~------------~------~~~l~~~~~~~l~~- 268 (316)
+|++|+|.|||++|.+ ||.|.+|+|++.+. .+++++.+.+... + ..++.+.+.+.+.+
T Consensus 565 ~Ge~I~p~eIE~~l~~-~p~V~~~~V~g~~~~~~~~a~vv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~ 643 (696)
T PLN02387 565 HGEYVSLGKVEAALSV-SPYVDNIMVHADPFHSYCVALVVPSQQALEKWAKKAGIDYSNFAELCEKEEAVKEVQQSLSKA 643 (696)
T ss_pred CCeEEchHHHHHHHhc-CCCeeEEEEEecCCcceEEEEEEeCHHHHHHHHHHcCCCCCCHHHHhcCHHHHHHHHHHHHHH
Confidence 6999999999999999 99999999999863 4566666653210 0 11233333333321
Q ss_pred -------hcCeeecEEEEEcCC----CcccCCCchhhHHHHHHHHHcCCCCcchh
Q psy14342 269 -------EHHLIVGVAVVVDPG----VVPINSRGEKQRMHLRDGFLADQLDPIYV 312 (316)
Q Consensus 269 -------~~~~~~~~~~~~~~~----~lP~t~~gKi~r~~l~~~~~~~~~~~~~~ 312 (316)
.++.+ ..+.++... .=-.|++.|++|+.+++.|++ +++.+|+
T Consensus 644 ~~~~~l~~~e~~-~~i~l~~~~~t~~~g~lT~t~K~~R~~i~~~y~~-~i~~ly~ 696 (696)
T PLN02387 644 AKAARLEKFEIP-AKIKLLPEPWTPESGLVTAALKLKREQIRKKFKD-DLKKLYE 696 (696)
T ss_pred HHHcCCCCccee-eEEEEECCCCCCCCCcCChhhhhhhHHHHHHHHH-HHHHHhC
Confidence 22233 455555421 123799999999999999997 8888874
|
|
| >PRK08315 AMP-binding domain protein; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.8e-35 Score=282.35 Aligned_cols=294 Identities=16% Similarity=0.132 Sum_probs=217.7
Q ss_pred CeEEEEeccCCCCCceEEEEeHHHHHHHHHHHHHHhcCCCCCceEEecCCcCChhhhHHHHhhhhcCceeeeeCCccccc
Q psy14342 1 MLAYLDFSVSTTGMLAGIKMSHAAVTSLCRSMKLACELYPSRHIALCLDPYCGLGFALWVLSSVYSGHHSILIPPSEVEV 80 (316)
Q Consensus 1 ~~a~i~~TSGTTG~PK~V~~t~~~l~~~~~~~~~~~~~~~~d~~l~~~p~~h~~g~~~~~~~~l~~G~~~v~~~~~~~~~ 80 (316)
++++++|||||||.||+|.++|+++..++......+++.++|+++.++|++|.+|++..++.++..|+++++.... .
T Consensus 200 ~~a~i~~TSGtTG~PK~v~~s~~~l~~~~~~~~~~~~~~~~d~~~~~~p~~~~~g~~~~~~~~l~~g~~~~~~~~~---~ 276 (559)
T PRK08315 200 DPINIQYTSGTTGFPKGATLTHRNILNNGYFIGEAMKLTEEDRLCIPVPLYHCFGMVLGNLACVTHGATMVYPGEG---F 276 (559)
T ss_pred CcEEEEEcCCCCCCcceEEeeHHHHHHHHHHHHHhcCCCCCceEEEecCcHHHHHHHHHHHHHHhccceEEEecCC---C
Confidence 4789999999999999999999999998888888899999999999999999999988889999999999865432 2
Q ss_pred ChHHHHHHHhccceeeEEecccchhhHHhhHHhhh---hhcccccccc------------------cccccccchhccCC
Q psy14342 81 NPALWLSAVSQYRVRDTFCSYGMLAGIKMSHAAVT---SLCRSMKLAC------------------ELYPSRHIALCLDP 139 (316)
Q Consensus 81 ~~~~~~~~~~~~~~t~~~~~~~~~~~l~~~~~~~~---~~~~~~~ls~------------------e~~~~yG~te~~~~ 139 (316)
+|..+++.++++++++++.+|+.+..+........ ...+.+-+.+ .+++.||+||++..
T Consensus 277 ~~~~~~~~l~~~~~t~~~~~P~~~~~~~~~~~~~~~~~~~lr~~~~~G~~~~~~~~~~~~~~~~~~~l~~~YG~tE~~~~ 356 (559)
T PRK08315 277 DPLATLAAVEEERCTALYGVPTMFIAELDHPDFARFDLSSLRTGIMAGSPCPIEVMKRVIDKMHMSEVTIAYGMTETSPV 356 (559)
T ss_pred CHHHHHHHHHHcCCeEEecchHHHHHHHhCcccCCCCchhhheeEecCCCCCHHHHHHHHHHcCCcceeEEEcccccccc
Confidence 78899999999999999999988765443221100 0011111111 27788999998653
Q ss_pred CCCCCceEEEEeeeccCcccccCCCce-EEecCc------------eEEecC---CCcccCCCcC-----------CCCc
Q psy14342 140 YCGLGFALWVLSSVYSGHHSILIPPSE-VEVNPA------------LWLSAV---SQYRVRDTFC-----------SCNG 192 (316)
Q Consensus 140 ~~~~~~~~~~~~~~~~g~~~~~~~g~~-~i~d~~------------l~v~~~---~gY~~~~~~~-----------~~d~ 192 (316)
........ ......++.|.++||++ .++|++ |+++|+ .|||+++..+ ++|.
T Consensus 357 ~~~~~~~~--~~~~~~~~vG~p~~~~~v~i~d~~~~~~~~~g~~GEl~v~g~~~~~gy~~~~~~~~~~~~~~~~~~TGD~ 434 (559)
T PRK08315 357 STQTRTDD--PLEKRVTTVGRALPHLEVKIVDPETGETVPRGEQGELCTRGYSVMKGYWNDPEKTAEAIDADGWMHTGDL 434 (559)
T ss_pred eeecCccc--chhhccCCCCccCCCcEEEEEcCccCCcCCCCCceEEEEECchhhhhhcCChhHHhhcCCCCCCEEccce
Confidence 32211100 00011234455899999 887743 899999 8999987543 2255
Q ss_pred eeee-cCc---CCcccceeEECCcccChHhHHHHHHHhccccceeEEEeeC-----CcEEEEEEecCCc-hhhcchHHHH
Q psy14342 193 ALYQ-GAE---RLALDETIMLRGMRYHPIDIENSVMRAHKKIAECAVFTWT-----NLLVVVVELDGNE-SEALDLVPLV 262 (316)
Q Consensus 193 g~~~-~g~---~GR~dd~i~~~G~~v~p~eIE~~l~~~~p~v~~~~v~~~~-----~~~~~~v~~~~~~-~~~~~l~~~~ 262 (316)
|+++ +|. .||.||+||++|++|+|.|||++|.+ +|+|.+++|++.. +.+++++...+.. .+..++.+.+
T Consensus 435 ~~~~~dg~~~~~GR~d~~i~~~G~~v~~~eIE~~l~~-~~~v~~~~v~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~l 513 (559)
T PRK08315 435 AVMDEEGYVNIVGRIKDMIIRGGENIYPREIEEFLYT-HPKIQDVQVVGVPDEKYGEEVCAWIILRPGATLTEEDVRDFC 513 (559)
T ss_pred EEEcCCceEEEEeeccceEEECCEEEcHHHHHHHHHh-CCCceEEEEEecCCCCCCeEEEEEEEeCCCCCCCHHHHHHHH
Confidence 6654 343 89999999999999999999999999 9999999999873 3466666655432 2335677777
Q ss_pred HHHHHHhcCeeecEEEEEcCCCcccCCCchhhHHHHHHHHHc
Q psy14342 263 TNAVLEEHHLIVGVAVVVDPGVVPINSRGEKQRMHLRDGFLA 304 (316)
Q Consensus 263 ~~~l~~~~~~~~~~~~~~~~~~lP~t~~gKi~r~~l~~~~~~ 304 (316)
++.+. .+..| ..+.+++ ++|+|++||++|.+|++...+
T Consensus 514 ~~~l~-~~~~P-~~i~~v~--~lP~t~~GK~~r~~L~~~~~~ 551 (559)
T PRK08315 514 RGKIA-HYKIP-RYIRFVD--EFPMTVTGKIQKFKMREMMIE 551 (559)
T ss_pred Hhhcc-cccCC-cEEEEcc--cCCCCCCCceeHHHHHHHHHh
Confidence 76666 44444 4555554 899999999999999998765
|
|
| >PRK07786 long-chain-fatty-acid--CoA ligase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-35 Score=282.87 Aligned_cols=298 Identities=17% Similarity=0.145 Sum_probs=217.5
Q ss_pred CeEEEEeccCCCCCceEEEEeHHHHHHHHHHHHHHhcC-CCCCceEEecCCcCChhhhHHHHhhhhcCceeeeeCCcccc
Q psy14342 1 MLAYLDFSVSTTGMLAGIKMSHAAVTSLCRSMKLACEL-YPSRHIALCLDPYCGLGFALWVLSSVYSGHHSILIPPSEVE 79 (316)
Q Consensus 1 ~~a~i~~TSGTTG~PK~V~~t~~~l~~~~~~~~~~~~~-~~~d~~l~~~p~~h~~g~~~~~~~~l~~G~~~v~~~~~~~~ 79 (316)
++++++|||||||.||+|.++|+++...+......+++ ..+|+++.++|++|.+|+.. ++.++..|+++++.+...+
T Consensus 175 ~~a~i~~TSGTTG~PK~v~~s~~~l~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~g~~~-~~~~l~~G~~~v~~~~~~~- 252 (542)
T PRK07786 175 SPALIMYTSGTTGRPKGAVLTHANLTGQAMTCLRTNGADINSDVGFVGVPLFHIAGIGS-MLPGLLLGAPTVIYPLGAF- 252 (542)
T ss_pred CeEEEEeCCCCCccchhhhhhHHHHHHHHHHHHHhcCCCCCCceEEEecchHHHHHHHH-HHHHHHccCEEEEccCCCc-
Confidence 47899999999999999999999999888887777887 57788899999999988865 8899999999998754332
Q ss_pred cChHHHHHHHhccceeeEEecccchhhHHhhHHhhhh--hcccccccc------------------cccccccchhccCC
Q psy14342 80 VNPALWLSAVSQYRVRDTFCSYGMLAGIKMSHAAVTS--LCRSMKLAC------------------ELYPSRHIALCLDP 139 (316)
Q Consensus 80 ~~~~~~~~~~~~~~~t~~~~~~~~~~~l~~~~~~~~~--~~~~~~ls~------------------e~~~~yG~te~~~~ 139 (316)
+|..+++.+++++++.++.+|+++..+......... ..+.+..++ .+++.||+||++..
T Consensus 253 -~~~~~~~~i~~~~~t~~~~~P~~l~~l~~~~~~~~~~~~lr~i~~gg~~~~~~~~~~~~~~~~~~~l~~~YG~tE~~~~ 331 (542)
T PRK07786 253 -DPGQLLDVLEAEKVTGIFLVPAQWQAVCAEQQARPRDLALRVLSWGAAPASDTLLRQMAATFPEAQILAAFGQTEMSPV 331 (542)
T ss_pred -CHHHHHHHHHHcCCeEEEehHHHHHHHHhCcccCccCcceEEEEECCCCCCHHHHHHHHHHcCCCeEEeeecccccccc
Confidence 789999999999999999999988765443221110 001011111 27889999998643
Q ss_pred CCCCCceEEEEeeeccCcccccCCCce-EEecCc-----------eEEecC---CCcccCCCcCC----------CCcee
Q psy14342 140 YCGLGFALWVLSSVYSGHHSILIPPSE-VEVNPA-----------LWLSAV---SQYRVRDTFCS----------CNGAL 194 (316)
Q Consensus 140 ~~~~~~~~~~~~~~~~g~~~~~~~g~~-~i~d~~-----------l~v~~~---~gY~~~~~~~~----------~d~g~ 194 (316)
........ .....++.|.+++|.. .++|++ |+++|+ .||+++++.+. +|.++
T Consensus 332 ~~~~~~~~---~~~~~~~~G~~~~~~~~~i~d~~~~~~~~g~~Gel~v~g~~~~~gy~~~~~~~~~~f~~~~~~TGDl~~ 408 (542)
T PRK07786 332 TCMLLGED---AIRKLGSVGKVIPTVAARVVDENMNDVPVGEVGEIVYRAPTLMSGYWNNPEATAEAFAGGWFHSGDLVR 408 (542)
T ss_pred eEecCccc---ccccCCCccccCCCceEEEECCCCCCCcCCCceEEEEEChhhhhhhcCCHHHHHHHhhCCcccccceEE
Confidence 22111100 0112234556899998 887753 899999 89999876543 35666
Q ss_pred eec-Cc---CCcccceeEECCcccChHhHHHHHHHhccccceeEEEeeC-----CcEEEEEEecCCc--hhhcchHHHHH
Q psy14342 195 YQG-AE---RLALDETIMLRGMRYHPIDIENSVMRAHKKIAECAVFTWT-----NLLVVVVELDGNE--SEALDLVPLVT 263 (316)
Q Consensus 195 ~~~-g~---~GR~dd~i~~~G~~v~p~eIE~~l~~~~p~v~~~~v~~~~-----~~~~~~v~~~~~~--~~~~~l~~~~~ 263 (316)
+++ |. .||.||+||++|++|+|.|||++|.+ ||.|.+++|++.. +.+++++...+.. ....++.+.++
T Consensus 409 ~~~~g~~~i~GR~~d~i~~~G~~v~~~eiE~~l~~-~~~v~~~~v~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~l~ 487 (542)
T PRK07786 409 QDEEGYVWVVDRKKDMIISGGENIYCAEVENVLAS-HPDIVEVAVIGRADEKWGEVPVAVAAVRNDDAALTLEDLAEFLT 487 (542)
T ss_pred EcCCceEEEEecccceEEeCCEEECHHHHHHHHHh-CCCccEEEEEeccCcccCceEEEEEEECCCCCCCCHHHHHHHHH
Confidence 643 43 89999999999999999999999999 9999999999873 3455555554432 22245666666
Q ss_pred HHHHHhcCeeecEEEEEcCCCcccCCCchhhHHHHHHHHHcCCCCc
Q psy14342 264 NAVLEEHHLIVGVAVVVDPGVVPINSRGEKQRMHLRDGFLADQLDP 309 (316)
Q Consensus 264 ~~l~~~~~~~~~~~~~~~~~~lP~t~~gKi~r~~l~~~~~~~~~~~ 309 (316)
+.+. .+..| ..+.++. ++|+|++||++|++|++.|.+.....
T Consensus 488 ~~l~-~~~~P-~~i~~v~--~iP~t~~GKv~r~~L~~~~~~~~~~~ 529 (542)
T PRK07786 488 DRLA-RYKHP-KALEIVD--ALPRNPAGKVLKTELRERYGACVNVE 529 (542)
T ss_pred hhcc-CCCCC-CEEEEec--cCCCCCcccccHHHHHHHHHhhhchh
Confidence 6555 34333 3555554 89999999999999999999866443
|
|
| >PLN02330 4-coumarate--CoA ligase-like 1 | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.9e-35 Score=281.49 Aligned_cols=292 Identities=14% Similarity=0.150 Sum_probs=208.4
Q ss_pred CeEEEEeccCCCCCceEEEEeHHHHHHHHHHHHHHhcCC----CCCceEEecCCcCChhhhHHHHhhhhcCceeeeeCCc
Q psy14342 1 MLAYLDFSVSTTGMLAGIKMSHAAVTSLCRSMKLACELY----PSRHIALCLDPYCGLGFALWVLSSVYSGHHSILIPPS 76 (316)
Q Consensus 1 ~~a~i~~TSGTTG~PK~V~~t~~~l~~~~~~~~~~~~~~----~~d~~l~~~p~~h~~g~~~~~~~~l~~G~~~v~~~~~ 76 (316)
++++|+|||||||.||+|.++|+++..++.. ..++.. ..++.+.++|++|.+|+...++.++..|+++++.+..
T Consensus 185 ~~a~il~TSGTTG~PKgv~~s~~~l~~~~~~--~~~~~~~~~~~~~~~~~~~p~~h~~g~~~~~~~~l~~g~~~~~~~~~ 262 (546)
T PLN02330 185 DLCALPFSSGTTGISKGVMLTHRNLVANLCS--SLFSVGPEMIGQVVTLGLIPFFHIYGITGICCATLRNKGKVVVMSRF 262 (546)
T ss_pred cEEEEEeCCCCcCCCcEEEEehHHHHHHHHH--HhhccCccccCceEEEEecChHHHHHHHHHHHHHhhcCCEEEEeccc
Confidence 5789999999999999999999998876543 233333 3467889999999999887788899999999887643
Q ss_pred ccccChHHHHHHHhccceeeEEecccchhhHHhhHHh--h--hhh-cccccccc------------------cccccccc
Q psy14342 77 EVEVNPALWLSAVSQYRVRDTFCSYGMLAGIKMSHAA--V--TSL-CRSMKLAC------------------ELYPSRHI 133 (316)
Q Consensus 77 ~~~~~~~~~~~~~~~~~~t~~~~~~~~~~~l~~~~~~--~--~~~-~~~~~ls~------------------e~~~~yG~ 133 (316)
++..+++.+++++++.+..+|+++..+...... . ... .+.+-..+ .+++.||+
T Consensus 263 ----~~~~~~~~i~~~~vt~~~~~P~~~~~l~~~~~~~~~~~~~~~l~~i~~~g~~l~~~~~~~~~~~~~~~~~~~~YG~ 338 (546)
T PLN02330 263 ----ELRTFLNALITQEVSFAPIVPPIILNLVKNPIVEEFDLSKLKLQAIMTAAAPLAPELLTAFEAKFPGVQVQEAYGL 338 (546)
T ss_pred ----CHHHHHHHHHHcCCeeeecCCHHHHHHHhCccccccccchheeeeEEEcCCcCCHHHHHHHHHHcCCCeEEecccc
Confidence 578899999999999999999988765442211 0 000 01111111 38889999
Q ss_pred hhccCCCCCCC-ceEEEEeeeccCcccccCCCce-EEecCc------------eEEecC---CCcccCCCcCCC------
Q psy14342 134 ALCLDPYCGLG-FALWVLSSVYSGHHSILIPPSE-VEVNPA------------LWLSAV---SQYRVRDTFCSC------ 190 (316)
Q Consensus 134 te~~~~~~~~~-~~~~~~~~~~~g~~~~~~~g~~-~i~d~~------------l~v~~~---~gY~~~~~~~~~------ 190 (316)
||++....... +... ......++.|.++||++ .++|++ |+++|+ .|||+++..+..
T Consensus 339 tE~~~~~~~~~~~~~~-~~~~~~~~vG~~~~~~~v~i~d~~~~~~~p~g~~Gel~v~g~~~~~gy~~~~~~~~~~~~~~g 417 (546)
T PLN02330 339 TEHSCITLTHGDPEKG-HGIAKKNSVGFILPNLEVKFIDPDTGRSLPKNTPGELCVRSQCVMQGYYNNKEETDRTIDEDG 417 (546)
T ss_pred cccccceecCCCcccc-ccccccCccccccCCcEEEEEeCCCCccCCCCCceEEEEecchhhhhhccCccchhhhccCCC
Confidence 99864322111 1000 00111234455899999 777632 999999 899998766532
Q ss_pred -----Cceeeec-Cc---CCcccceeEECCcccChHhHHHHHHHhccccceeEEEeeC-----CcEEEEEEecCCc-hhh
Q psy14342 191 -----NGALYQG-AE---RLALDETIMLRGMRYHPIDIENSVMRAHKKIAECAVFTWT-----NLLVVVVELDGNE-SEA 255 (316)
Q Consensus 191 -----d~g~~~~-g~---~GR~dd~i~~~G~~v~p~eIE~~l~~~~p~v~~~~v~~~~-----~~~~~~v~~~~~~-~~~ 255 (316)
|.|++++ |. .||.||+|+++|++|+|.|||++|.+ ||.|.+++|+++. +.++++++..+.. .+.
T Consensus 418 ~~~TGD~~~~~~dG~l~~~GR~~d~i~~~G~~v~~~~iE~~l~~-~~~v~~~~v~~~~~~~~g~~~~a~v~~~~~~~~~~ 496 (546)
T PLN02330 418 WLHTGDIGYIDDDGDIFIVDRIKELIKYKGFQVAPAELEAILLT-HPSVEDAAVVPLPDEEAGEIPAACVVINPKAKESE 496 (546)
T ss_pred ceecccEEEEeCCCcEEEEechHHhhhcCCEEECHHHHHHHHHh-CCchheEEEEeccccccCceeEEEEEECCCCCCCH
Confidence 5555543 33 99999999999999999999999999 9999999999873 3566666665432 233
Q ss_pred cchHHHHHHHHHHhcCeeecEEEEEcCCCcccCCCchhhHHHHHHHHHc
Q psy14342 256 LDLVPLVTNAVLEEHHLIVGVAVVVDPGVVPINSRGEKQRMHLRDGFLA 304 (316)
Q Consensus 256 ~~l~~~~~~~l~~~~~~~~~~~~~~~~~~lP~t~~gKi~r~~l~~~~~~ 304 (316)
+++.+.+++.+. .+..+ ..+.++ +++|+|++||++|++|++.+..
T Consensus 497 ~~l~~~~~~~l~-~~~~p-~~~~~v--~~iP~t~~GK~~r~~L~~~~~~ 541 (546)
T PLN02330 497 EDILNFVAANVA-HYKKV-RVVQFV--DSIPKSLSGKIMRRLLKEKMLS 541 (546)
T ss_pred HHHHHHHHHhcc-cccCc-eEEEEe--ccCCCCCCcceeHHHHHHHHHh
Confidence 567777776666 34443 334444 4899999999999999999865
|
|
| >PRK12467 peptide synthase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.2e-36 Score=334.30 Aligned_cols=300 Identities=16% Similarity=0.129 Sum_probs=216.4
Q ss_pred CeEEEEeccCCCCCceEEEEeHHHHHHHHHHHHHHhcCCCCCceEEecCCcCChhhhHHHHhhhhcCceeeeeCCccccc
Q psy14342 1 MLAYLDFSVSTTGMLAGIKMSHAAVTSLCRSMKLACELYPSRHIALCLDPYCGLGFALWVLSSVYSGHHSILIPPSEVEV 80 (316)
Q Consensus 1 ~~a~i~~TSGTTG~PK~V~~t~~~l~~~~~~~~~~~~~~~~d~~l~~~p~~h~~g~~~~~~~~l~~G~~~v~~~~~~~~~ 80 (316)
++|||+|||||||.||||+++|+++...+......+++.++|+++.+.|++|+.+++. ++.++..|+++++.++.. ..
T Consensus 1719 ~~ayiiyTSGSTG~PKGV~~th~~l~~~~~~~~~~~~~~~~d~~l~~~~~~fd~~~~~-~~~~L~~G~~lvi~~~~~-~~ 1796 (3956)
T PRK12467 1719 NLAYVIYTSGSTGRPKGAGNRHGALVNRLCATQEAYQLSAADVVLQFTSFAFDVSVWE-LFWPLINGARLVIAPPGA-HR 1796 (3956)
T ss_pred CcEEEEECCCcCCCCCEEEEcCHHHHHHHHHHHHhcCCCcccEEEEecCccHHHHHHH-HHHHHhCCCEEEEcChhh-cC
Confidence 5799999999999999999999999999988889999999999999999999999876 899999999999987653 45
Q ss_pred ChHHHHHHHhccceeeEEecccchhhHHhhHHhhh--hhcccccccc------------------cccccccchhccCCC
Q psy14342 81 NPALWLSAVSQYRVRDTFCSYGMLAGIKMSHAAVT--SLCRSMKLAC------------------ELYPSRHIALCLDPY 140 (316)
Q Consensus 81 ~~~~~~~~~~~~~~t~~~~~~~~~~~l~~~~~~~~--~~~~~~~ls~------------------e~~~~yG~te~~~~~ 140 (316)
+|..+++.++++++|++..+|+++..+........ ...+.+-+++ .+++.||+||++...
T Consensus 1797 ~~~~l~~~i~~~~vt~~~~~Ps~~~~l~~~~~~~~~~~~lr~v~~gGe~l~~~~~~~~~~~~~~~~l~n~YG~TE~t~~~ 1876 (3956)
T PRK12467 1797 DPEQLIQLIERQQVTTLHFVPSMLQQLLQMDEQVEHPLSLRRVVCGGEALEVEALRPWLERLPDTGLFNLYGPTETAVDV 1876 (3956)
T ss_pred CHHHHHHHHHHcCCeEEECCHHHHHHHHhhccccccCCCceEEEEccccCCHHHHHHHHHhCCCCeEEeCccCCcCEEeE
Confidence 78999999999999999999999876654211100 0111222222 278899999986432
Q ss_pred CCCCceEEEEeeeccCcccccCCCce-EEecCc-----------eEEecC---CCcccCCCcCCC---------------
Q psy14342 141 CGLGFALWVLSSVYSGHHSILIPPSE-VEVNPA-----------LWLSAV---SQYRVRDTFCSC--------------- 190 (316)
Q Consensus 141 ~~~~~~~~~~~~~~~g~~~~~~~g~~-~i~d~~-----------l~v~~~---~gY~~~~~~~~~--------------- 190 (316)
................+.|.|++|.+ .+.|++ |+++|+ .||+++++.++.
T Consensus 1877 t~~~~~~~~~~~~~~~~iG~p~~~~~~~vld~~~~~vp~G~~GEl~i~G~~v~~GYl~~p~~t~~~f~~~p~~~~~~r~y 1956 (3956)
T PRK12467 1877 THWTCRRKDLEGRDSVPIGQPIANLSTYILDASLNPVPIGVAGELYLGGVGLARGYLNRPALTAERFVADPFGTVGSRLY 1956 (3956)
T ss_pred EEEeccccccccCCCCCcccccCCCEEEEECCCCCCCCCCCceEEEeccccccccccCChhhhhhhCcCCCCCCCCccce
Confidence 21110000000011224566899999 888764 999999 899998765432
Q ss_pred ---Cceeee-cCc---CCcccceeEECCcccChHhHHHHHHHhccccceeEEEeeC----CcEEEEEEecCCchh-----
Q psy14342 191 ---NGALYQ-GAE---RLALDETIMLRGMRYHPIDIENSVMRAHKKIAECAVFTWT----NLLVVVVELDGNESE----- 254 (316)
Q Consensus 191 ---d~g~~~-~g~---~GR~dd~i~~~G~~v~p~eIE~~l~~~~p~v~~~~v~~~~----~~~~~~v~~~~~~~~----- 254 (316)
|.|+++ +|. +||.||+||++|++|.|.|||++|.+ ||.|.+|+|++.. +++++++........
T Consensus 1957 rTGDl~~~~~dG~l~~~GR~D~qVki~G~rIel~eIE~~l~~-~p~V~~a~vv~~~~~~~~~lva~vv~~~~~~~~~~~~ 2035 (3956)
T PRK12467 1957 RTGDLARYRADGVIEYLGRIDHQVKIRGFRIELGEIEARLRE-QGGVREAVVIAQDGANGKQLVAYVVPTDPGLVDDDEA 2035 (3956)
T ss_pred eccceEEECCCCCEEEecccCceEEeCeEEechHHHHHHHHh-CCCcceEEEEEecCCCCcEEEEEEEecCccccccccc
Confidence 444443 343 99999999999999999999999999 9999999999884 367777765443211
Q ss_pred hcchHHHHHHHHHHhcCeeecEEEEEcCCCcccCCCchhhHHHHHHHHH
Q psy14342 255 ALDLVPLVTNAVLEEHHLIVGVAVVVDPGVVPINSRGEKQRMHLRDGFL 303 (316)
Q Consensus 255 ~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~lP~t~~gKi~r~~l~~~~~ 303 (316)
.....+.+++.+.+.......+..++..+++|+|++||++|++|.+.+.
T Consensus 2036 ~~~~~~~l~~~l~~~Lp~ymvP~~~~~l~~lP~t~~GKidr~~L~~~~~ 2084 (3956)
T PRK12467 2036 QVALRAILKNHLKASLPEYMVPAHLVFLARMPLTPNGKLDRKALPAPDA 2084 (3956)
T ss_pred ccccHHHHHHHHHhhCchhhCchhhhhhhcCCCCCCCCcchhhCCCCcc
Confidence 1112333444444332222223344455589999999999999986543
|
|
| >PRK12316 peptide synthase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.4e-36 Score=337.87 Aligned_cols=300 Identities=15% Similarity=0.100 Sum_probs=219.2
Q ss_pred CeEEEEeccCCCCCceEEEEeHHHHHHHHHHHHHHhcCCCCCceEEecCCcCChhhhHHHHhhhhcCceeeeeCCccccc
Q psy14342 1 MLAYLDFSVSTTGMLAGIKMSHAAVTSLCRSMKLACELYPSRHIALCLDPYCGLGFALWVLSSVYSGHHSILIPPSEVEV 80 (316)
Q Consensus 1 ~~a~i~~TSGTTG~PK~V~~t~~~l~~~~~~~~~~~~~~~~d~~l~~~p~~h~~g~~~~~~~~l~~G~~~v~~~~~~~~~ 80 (316)
++|||+|||||||.||||+++|+++...+......+++.++|+++.+.|++|+.+.+. ++.++..|+++++.++..+
T Consensus 4695 ~~a~ii~TSGSTG~PKgV~~~h~~l~~~~~~~~~~~~~~~~d~~l~~~~~~fd~~~~~-~~~~L~~G~~lvi~~~~~~-- 4771 (5163)
T PRK12316 4695 NLAYVIYTSGSTGRPKGVAVSHGSLVNHLHATGERYELTPDDRVLQFMSFSFDGSHEG-LYHPLINGASVVIRDDSLW-- 4771 (5163)
T ss_pred ceEEEEECCCCCCCCCEeeeccHHHHHHHHHHHHhcCCCcCCeEEEecCcchhhHHHH-HHHHHhCCCEEEEcCcccC--
Confidence 5799999999999999999999999999999889999999999999999999988876 8999999999999765543
Q ss_pred ChHHHHHHHhccceeeEEecccchhhHHhhHHhh--hhhcccccccc------------------cccccccchhccCCC
Q psy14342 81 NPALWLSAVSQYRVRDTFCSYGMLAGIKMSHAAV--TSLCRSMKLAC------------------ELYPSRHIALCLDPY 140 (316)
Q Consensus 81 ~~~~~~~~~~~~~~t~~~~~~~~~~~l~~~~~~~--~~~~~~~~ls~------------------e~~~~yG~te~~~~~ 140 (316)
+|..+++.++++++|+++.+|+++..+....... ....+.+-+++ .+++.||+||++...
T Consensus 4772 ~~~~l~~~i~~~~vt~~~~~Ps~~~~l~~~~~~~~~~~~lr~v~~gGe~l~~~~~~~~~~~~~~~~l~n~YG~TE~~~~~ 4851 (5163)
T PRK12316 4772 DPERLYAEIHEHRVTVLVFPPVYLQQLAEHAERDGEPPSLRVYCFGGEAVAQASYDLAWRALKPVYLFNGYGPTETTVTV 4851 (5163)
T ss_pred CHHHHHHHHHHcCCEEEEcCHHHHHHHHhhhccccCCCCccEEEEecccCCHHHHHHHHHhCCCCEEEecccCccceEEE
Confidence 7899999999999999999999887665433211 00111122222 288899999997532
Q ss_pred CCCCceEEEEeeeccCcccccCCCce-EEecCc-----------eEEecC---CCcccCCCcCCC---------------
Q psy14342 141 CGLGFALWVLSSVYSGHHSILIPPSE-VEVNPA-----------LWLSAV---SQYRVRDTFCSC--------------- 190 (316)
Q Consensus 141 ~~~~~~~~~~~~~~~g~~~~~~~g~~-~i~d~~-----------l~v~~~---~gY~~~~~~~~~--------------- 190 (316)
................+.|.|++|.+ +++|++ |+++|+ .|||++++.+..
T Consensus 4852 ~~~~~~~~~~~~~~~~~iG~p~~~~~~~i~d~~~~~~p~g~~GEl~i~G~~v~~GY~~~~~~t~~~f~~~p~~~~~~~~y 4931 (5163)
T PRK12316 4852 LLWKARDGDACGAAYMPIGTPLGNRSGYVLDGQLNPLPVGVAGELYLGGEGVARGYLERPALTAERFVPDPFGAPGGRLY 4931 (5163)
T ss_pred EEEEcccccccCCCCCcccccccCCEEEEECCCCCcCCCCCCceEEECCcccchhhcCChhhhhhhccCCCCCCCCccee
Confidence 21110000000011224556899999 888754 999999 999998865422
Q ss_pred ---Cceeeec-Cc---CCcccceeEECCcccChHhHHHHHHHhccccceeEEEeeC----CcEEEEEEecCCch-h----
Q psy14342 191 ---NGALYQG-AE---RLALDETIMLRGMRYHPIDIENSVMRAHKKIAECAVFTWT----NLLVVVVELDGNES-E---- 254 (316)
Q Consensus 191 ---d~g~~~~-g~---~GR~dd~i~~~G~~v~p~eIE~~l~~~~p~v~~~~v~~~~----~~~~~~v~~~~~~~-~---- 254 (316)
|.|++++ |. +||.||+||++|++|.|.|||++|.+ ||.|.+|+|++.. +++++++....... +
T Consensus 4932 rTGDl~~~~~dG~l~~~GR~d~~iki~G~ri~~~eIE~~l~~-~p~V~~a~v~~~~~~~~~~l~a~v~~~~~~~~~~~~~ 5010 (5163)
T PRK12316 4932 RTGDLARYRADGVIDYLGRVDHQVKIRGFRIELGEIEARLRE-HPAVREAVVIAQEGAVGKQLVGYVVPQDPALADADEA 5010 (5163)
T ss_pred ecCceeEECCCCcEEEeccccceEeeccEeecHHHHHHHHHh-CCCcceEEEEEeeCCCCcEEEEEEeCCcccccccccc
Confidence 4555543 33 99999999999999999999999999 9999999999873 35777766543221 1
Q ss_pred hcchHHHHHHHHHHhcCeeecEEEEEcCCCcccCCCchhhHHHHHHHHHc
Q psy14342 255 ALDLVPLVTNAVLEEHHLIVGVAVVVDPGVVPINSRGEKQRMHLRDGFLA 304 (316)
Q Consensus 255 ~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~lP~t~~gKi~r~~l~~~~~~ 304 (316)
..++.+.+++.+.+.......+..++.++++|+|++||++|++|.+.+.+
T Consensus 5011 ~~~~~~~l~~~l~~~lp~y~vP~~~~~~~~lP~t~~GKvdR~~L~~~~~~ 5060 (5163)
T PRK12316 5011 QAELRDELKAALRERLPEYMVPAHLVFLARMPLTPNGKLDRKALPQPDAS 5060 (5163)
T ss_pred chhhHHHHHHHHhccCchhhCCcceeecccCCCCCCcccChhhcCCcccc
Confidence 12344555555554332222233445555899999999999999877654
|
|
| >PLN03102 acyl-activating enzyme; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.9e-35 Score=281.93 Aligned_cols=294 Identities=14% Similarity=0.110 Sum_probs=200.3
Q ss_pred CeEEEEeccCCCCCceEEEEeHHHHHHHHHHHHHHhcCCCCCceEEecCCcCChhhhHHHHhhhhcCceeeeeCCccccc
Q psy14342 1 MLAYLDFSVSTTGMLAGIKMSHAAVTSLCRSMKLACELYPSRHIALCLDPYCGLGFALWVLSSVYSGHHSILIPPSEVEV 80 (316)
Q Consensus 1 ~~a~i~~TSGTTG~PK~V~~t~~~l~~~~~~~~~~~~~~~~d~~l~~~p~~h~~g~~~~~~~~l~~G~~~v~~~~~~~~~ 80 (316)
|+++|+|||||||.||+|+++|+++..........+.....++++..+|++|..|+.. .+.++..|+++++....
T Consensus 187 d~~~il~TSGTTG~PK~v~~s~~~~~~~~~~~~~~~~~~~~~~~l~~~pl~h~~g~~~-~~~~~~~g~~~v~~~~~---- 261 (579)
T PLN03102 187 DPISLNYTSGTTADPKGVVISHRGAYLSTLSAIIGWEMGTCPVYLWTLPMFHCNGWTF-TWGTAARGGTSVCMRHV---- 261 (579)
T ss_pred CcEEEEeCCcCCCCCCEEEEecHHHHHHHHHHHhhcCCCCCCeEEecCChhhhcchhH-HHHHHHhcCcEEeeccC----
Confidence 5799999999999999999999987655444344455666778888899999999876 67788889998887532
Q ss_pred ChHHHHHHHhccceeeEEecccchhhHHhhHHhhhh---hcccccccc----------------cccccccchhccCCCC
Q psy14342 81 NPALWLSAVSQYRVRDTFCSYGMLAGIKMSHAAVTS---LCRSMKLAC----------------ELYPSRHIALCLDPYC 141 (316)
Q Consensus 81 ~~~~~~~~~~~~~~t~~~~~~~~~~~l~~~~~~~~~---~~~~~~ls~----------------e~~~~yG~te~~~~~~ 141 (316)
++..+++.++++++|++.++|+++..+......... ..+.+-.++ .+++.||+||++....
T Consensus 262 ~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~~~~~~g~~i~~~YG~tE~~~~~~ 341 (579)
T PLN03102 262 TAPEIYKNIEMHNVTHMCCVPTVFNILLKGNSLDLSPRSGPVHVLTGGSPPPAALVKKVQRLGFQVMHAYGLTEATGPVL 341 (579)
T ss_pred ChHHHHHHHHHcCCeEEEeChHHHHHHHhCcccccCCcccceEEEECCCCCCHHHHHHHHHcCCeEEeecCccccCcccc
Confidence 467789999999999999999998766543221000 001111111 3888999999875322
Q ss_pred CCC--------ceEEEEe-eeccCcccccCCCce-EE------e--c----CceEEecC---CCcccCCCcCCC------
Q psy14342 142 GLG--------FALWVLS-SVYSGHHSILIPPSE-VE------V--N----PALWLSAV---SQYRVRDTFCSC------ 190 (316)
Q Consensus 142 ~~~--------~~~~~~~-~~~~g~~~~~~~g~~-~i------~--d----~~l~v~~~---~gY~~~~~~~~~------ 190 (316)
... +...... ....|..+.++++++ +. + + ++|+++|+ .|||++++.+..
T Consensus 342 ~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~v~i~~~~~~~~v~~~~~~~GEl~v~g~~~~~GY~~~~~~t~~~f~~gw 421 (579)
T PLN03102 342 FCEWQDEWNRLPENQQMELKARQGVSILGLADVDVKNKETQESVPRDGKTMGEIVIKGSSIMKGYLKNPKATSEAFKHGW 421 (579)
T ss_pred ccccccccccCCcccccccccCCCcccccccceEEeccccccccCCCCCCceEEEEECcchhhhhcCChhhhHhhhccCc
Confidence 110 0000000 001111111222222 11 1 1 23999999 999998766532
Q ss_pred ----Cceeeec-Cc---CCcccceeEECCcccChHhHHHHHHHhccccceeEEEeeC-----CcEEEEEEecCCchh---
Q psy14342 191 ----NGALYQG-AE---RLALDETIMLRGMRYHPIDIENSVMRAHKKIAECAVFTWT-----NLLVVVVELDGNESE--- 254 (316)
Q Consensus 191 ----d~g~~~~-g~---~GR~dd~i~~~G~~v~p~eIE~~l~~~~p~v~~~~v~~~~-----~~~~~~v~~~~~~~~--- 254 (316)
|.|++++ |. .||.||+||++|++|+|.|||++|.+ ||.|.+++|++.. +.+++++.+......
T Consensus 422 ~~TGDlg~~d~dG~l~i~GR~~d~i~~~G~~v~p~eIE~~l~~-~p~V~~a~vv~~~~~~~~~~~~a~v~~~~~~~~~~~ 500 (579)
T PLN03102 422 LNTGDVGVIHPDGHVEIKDRSKDIIISGGENISSVEVENVLYK-YPKVLETAVVAMPHPTWGETPCAFVVLEKGETTKED 500 (579)
T ss_pred eecCceEEEcCCCeEEEEeccCcEEEECCEEECHHHHHHHHHh-CCCcceeEEEeccCccccceeEEEEEecCccccccc
Confidence 5566644 32 99999999999999999999999999 9999999999983 467777766543221
Q ss_pred --------hcchHHHHHHHHHHhcCeeecEEEEEcCCCcccCCCchhhHHHHHHHHHc
Q psy14342 255 --------ALDLVPLVTNAVLEEHHLIVGVAVVVDPGVVPINSRGEKQRMHLRDGFLA 304 (316)
Q Consensus 255 --------~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~lP~t~~gKi~r~~l~~~~~~ 304 (316)
..++.++++..+. .+..| ..+.+++ ++|+|++||++|++|++...+
T Consensus 501 ~~~~~~~~~~~l~~~~~~~L~-~~~~P-~~i~~~~--~~P~t~~gKi~r~~L~~~~~~ 554 (579)
T PLN03102 501 RVDKLVTRERDLIEYCRENLP-HFMCP-RKVVFLQ--ELPKNGNGKILKPKLRDIAKG 554 (579)
T ss_pred ccccccccHHHHHHHHHhhcc-cccCC-eEEEEcc--cCCCCCcccccHHHHHHHHHH
Confidence 2345666666655 45554 3455554 899999999999999988654
|
|
| >PLN02430 long-chain-fatty-acid-CoA ligase | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-35 Score=286.95 Aligned_cols=302 Identities=12% Similarity=0.040 Sum_probs=209.4
Q ss_pred CeEEEEeccCCCCCceEEEEeHHHHHHHHHHHHHHh-----cCCCCCceEEecCCcCChhhhHHHHhhhhcCceeeeeCC
Q psy14342 1 MLAYLDFSVSTTGMLAGIKMSHAAVTSLCRSMKLAC-----ELYPSRHIALCLDPYCGLGFALWVLSSVYSGHHSILIPP 75 (316)
Q Consensus 1 ~~a~i~~TSGTTG~PK~V~~t~~~l~~~~~~~~~~~-----~~~~~d~~l~~~p~~h~~g~~~~~~~~l~~G~~~v~~~~ 75 (316)
|+++|+|||||||.||||++||+++...+.+....+ ++.++|++++++|++|.++++. .+.++..|+++++...
T Consensus 221 d~a~iiyTSGTTG~PKGV~lth~~~~~~~~~~~~~~~~~~~~~~~~d~~ls~lPl~H~~~~~~-~~~~l~~G~~i~~~~~ 299 (660)
T PLN02430 221 DICTIMYTSGTSGDPKGVVLTHEAVATFVRGVDLFMEQFEDKMTHDDVYLSFLPLAHILDRMI-EEYFFRKGASVGYYHG 299 (660)
T ss_pred ceEEEEECCCCCCCCCEEEeecHHHHHHHHHHHhhccccccCCCCCCEEEEeCcHHHHHHHHH-HHHHHHcCCEEEEeCC
Confidence 689999999999999999999999988776654322 4678899999999999999887 4667889999887642
Q ss_pred cccccChHHHHHHHhccceeeEEecccchhhHHhhHHh-h-----------------------------------h----
Q psy14342 76 SEVEVNPALWLSAVSQYRVRDTFCSYGMLAGIKMSHAA-V-----------------------------------T---- 115 (316)
Q Consensus 76 ~~~~~~~~~~~~~~~~~~~t~~~~~~~~~~~l~~~~~~-~-----------------------------------~---- 115 (316)
++..+++.++++++|++..+|.++..+...... . .
T Consensus 300 -----~~~~l~~~l~~~~pt~~~~vP~~~~~l~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~l~~ 374 (660)
T PLN02430 300 -----DLNALRDDLMELKPTLLAGVPRVFERIHEGIQKALQELNPRRRLIFNALYKYKLAWMNRGYSHKKASPMADFLAF 374 (660)
T ss_pred -----ChhhHHHHHHHhCCcEEEecHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHHhcCCCCCCcchhHHHHHH
Confidence 466789999999999999999887644321100 0 0
Q ss_pred ----hhc-cccc--ccc------------------cccccccchhccCCCCCCCceEEEEeeeccCcccccCCCce-EEe
Q psy14342 116 ----SLC-RSMK--LAC------------------ELYPSRHIALCLDPYCGLGFALWVLSSVYSGHHSILIPPSE-VEV 169 (316)
Q Consensus 116 ----~~~-~~~~--ls~------------------e~~~~yG~te~~~~~~~~~~~~~~~~~~~~g~~~~~~~g~~-~i~ 169 (316)
... ..+. +++ .+++.||+||++.......+. .....|..|.+.||++ ++.
T Consensus 375 ~~i~~~~G~~lr~~~~gga~l~~~~~~~~~~~~~~~i~~~YG~TE~~~~~~~~~~~----~~~~~gsvG~p~~~~evki~ 450 (660)
T PLN02430 375 RKVKAKLGGRLRLLISGGAPLSTEIEEFLRVTSCAFVVQGYGLTETLGPTTLGFPD----EMCMLGTVGAPAVYNELRLE 450 (660)
T ss_pred HHHHHHhCCeEEEEEECCCCCCHHHHHHHHHhcCCCeeeecchhhhhhceEeeccc----cCCCCCCccCCCCceEEEEE
Confidence 000 0111 111 167899999987544322221 1112344556899999 775
Q ss_pred c--------------CceEEecC---CCcccCCCcCCC----------Cceeee-cCc---CCcccceeEE-CCcccChH
Q psy14342 170 N--------------PALWLSAV---SQYRVRDTFCSC----------NGALYQ-GAE---RLALDETIML-RGMRYHPI 217 (316)
Q Consensus 170 d--------------~~l~v~~~---~gY~~~~~~~~~----------d~g~~~-~g~---~GR~dd~i~~-~G~~v~p~ 217 (316)
| ++|+++|+ .|||++++.+.. |.|+++ +|. .||.||+||. +|++|+|.
T Consensus 451 d~~~~g~~~~~~~~~GEi~vrg~~v~~GY~~~~e~t~~~~~dGw~~TGDig~~d~dG~l~i~gR~kd~ik~~~G~~V~p~ 530 (660)
T PLN02430 451 EVPEMGYDPLGEPPRGEICVRGKCLFSGYYKNPELTEEVMKDGWFHTGDIGEILPNGVLKIIDRKKNLIKLSQGEYVALE 530 (660)
T ss_pred EcCCcCcccCCCCCcceEEecCCCccccccCChHHhhhhhhccceeccceEEECCCCcEEEEEcccccEEcCCCcEEchH
Confidence 4 23999999 899999877643 455554 343 9999999996 79999999
Q ss_pred hHHHHHHHhccccceeEEEeeC--CcEEEEEEecCCch-----------------hhcchHHHHHHHHHHh---cCe---
Q psy14342 218 DIENSVMRAHKKIAECAVFTWT--NLLVVVVELDGNES-----------------EALDLVPLVTNAVLEE---HHL--- 272 (316)
Q Consensus 218 eIE~~l~~~~p~v~~~~v~~~~--~~~~~~v~~~~~~~-----------------~~~~l~~~~~~~l~~~---~~~--- 272 (316)
+||++|.+ ||.|.+|+|+|.. +.+++++++.+... ...++.+.+.+.+.+. .++
T Consensus 531 ~IE~~l~~-~p~V~~~~V~G~~~~~~~~A~vv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~i~~~~~~~~l~~~ 609 (660)
T PLN02430 531 YLENVYGQ-NPIVEDIWVYGDSFKSMLVAVVVPNEENTNKWAKDNGFTGSFEELCSLPELKEHILSELKSTAEKNKLRGF 609 (660)
T ss_pred HHHHHHhc-CCCeeEEEEEecCCcceEEEEEEcCHHHHHHHHHhCCCCCCHHHHhcCHHHHHHHHHHHHHHHHHhCCCCc
Confidence 99999999 9999999999975 35677776653210 0122343343333211 111
Q ss_pred -eecEEEEEcC----CCcccCCCchhhHHHHHHHHHcCCCCcchhhc
Q psy14342 273 -IVGVAVVVDP----GVVPINSRGEKQRMHLRDGFLADQLDPIYVAY 314 (316)
Q Consensus 273 -~~~~~~~~~~----~~lP~t~~gKi~r~~l~~~~~~~~~~~~~~~~ 314 (316)
.+..+.+... +.=.+|+++|++|+.+.+.|++ .++.+|+..
T Consensus 610 e~i~~~~l~~~~~~~~~g~lT~t~K~~R~~i~~~y~~-~i~~ly~~~ 655 (660)
T PLN02430 610 EYIKGVILETKPFDVERDLVTATLKKRRNNLLKYYQV-EIDEMYRKL 655 (660)
T ss_pred eeeeEEEEECCCCCCcCCcCChhhhhhhHHHHHHHHH-HHHHHHHhh
Confidence 1233444431 1225899999999999999998 899898654
|
|
| >PRK06178 acyl-CoA synthetase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.8e-35 Score=281.61 Aligned_cols=294 Identities=16% Similarity=0.097 Sum_probs=209.8
Q ss_pred CeEEEEeccCCCCCceEEEEeHHHHHHHHHHHHH-HhcCCCCCceEEecCCcCChhhhHHHHhhhhcCceeeeeCCcccc
Q psy14342 1 MLAYLDFSVSTTGMLAGIKMSHAAVTSLCRSMKL-ACELYPSRHIALCLDPYCGLGFALWVLSSVYSGHHSILIPPSEVE 79 (316)
Q Consensus 1 ~~a~i~~TSGTTG~PK~V~~t~~~l~~~~~~~~~-~~~~~~~d~~l~~~p~~h~~g~~~~~~~~l~~G~~~v~~~~~~~~ 79 (316)
++++|+|||||||.||+|.+||+++...+..... ...+.++|+++.++|++|.+|+...++.++..|+++++.++.
T Consensus 210 ~~a~i~~TSGTTG~PK~v~~t~~~~~~~~~~~~~~~~~~~~~d~~l~~~p~~~~~g~~~~~~~~l~~G~~~~l~~~~--- 286 (567)
T PRK06178 210 ALAALNYTGGTTGMPKGCEHTQRDMVYTAAAAYAVAVVGGEDSVFLSFLPEFWIAGENFGLLFPLFSGATLVLLARW--- 286 (567)
T ss_pred CeEEEEeCCCCCCCCceEEeccHHHHHHHHHHHHHhccCCCCcEEEEecchHHHHHHHHHHHHHHHcCceEEEeCCC---
Confidence 5799999999999999999999998876554433 356778899999999999999877788999999999998632
Q ss_pred cChHHHHHHHhccceeeEEecccchhhHHhhHHhhh---hhcccc-------cccc------------ccc-ccccchhc
Q psy14342 80 VNPALWLSAVSQYRVRDTFCSYGMLAGIKMSHAAVT---SLCRSM-------KLAC------------ELY-PSRHIALC 136 (316)
Q Consensus 80 ~~~~~~~~~~~~~~~t~~~~~~~~~~~l~~~~~~~~---~~~~~~-------~ls~------------e~~-~~yG~te~ 136 (316)
++..++..+++++++..+.+|+.+..+........ ...+.+ .++. .+. ..||+||+
T Consensus 287 -~~~~~~~~i~~~~~t~~~~~~~~~~~l~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~YG~tE~ 365 (567)
T PRK06178 287 -DAVAFMAAVERYRVTRTVMLVDNAVELMDHPRFAEYDLSSLRQVRVVSFVKKLNPDYRQRWRALTGSVLAEAAWGMTET 365 (567)
T ss_pred -CHHHHHHHHHHhCCeEEeccHHHHHHHHhCCCCCCCCcchheeeeeccccccCCHHHHHHHHHHhCCcccccccccccc
Confidence 68899999999999988888777654433211000 000000 0000 122 47999998
Q ss_pred cCCCCCCCc--eEEEEeeeccCcccccCCCce-EEecCc------------eEEecC---CCcccCCCcCCC--------
Q psy14342 137 LDPYCGLGF--ALWVLSSVYSGHHSILIPPSE-VEVNPA------------LWLSAV---SQYRVRDTFCSC-------- 190 (316)
Q Consensus 137 ~~~~~~~~~--~~~~~~~~~~g~~~~~~~g~~-~i~d~~------------l~v~~~---~gY~~~~~~~~~-------- 190 (316)
+........ ..........+..|.++||++ +++|++ |+++|+ .|||++++.+..
T Consensus 366 ~~~~~~~~~~~~~~~~~~~~~~~vG~p~~g~~v~v~d~~~~~~~~~g~~Gel~v~g~~v~~gY~~~~~~~~~~~~dg~~~ 445 (567)
T PRK06178 366 HTCDTFTAGFQDDDFDLLSQPVFVGLPVPGTEFKICDFETGELLPLGAEGEIVVRTPSLLKGYWNKPEATAEALRDGWLH 445 (567)
T ss_pred cccceeccccccCccccccCCcccccccCCcEEEEEcCCCCCcCCCCCceEEEEECCcccccccCChhhhhhcccCCcee
Confidence 643222111 000000011223456899999 888732 999999 899998765432
Q ss_pred --Cceeee-cCc---CCcccceeEECCcccChHhHHHHHHHhccccceeEEEee-----CCcEEEEEEecCCc-hhhcch
Q psy14342 191 --NGALYQ-GAE---RLALDETIMLRGMRYHPIDIENSVMRAHKKIAECAVFTW-----TNLLVVVVELDGNE-SEALDL 258 (316)
Q Consensus 191 --d~g~~~-~g~---~GR~dd~i~~~G~~v~p~eIE~~l~~~~p~v~~~~v~~~-----~~~~~~~v~~~~~~-~~~~~l 258 (316)
|.|+++ +|. +||.||+|+++|++|+|.|||++|.+ +|.|.++++++. ++.++++++..+.. .+.+++
T Consensus 446 TGDl~~~~~~g~l~i~GR~~d~i~~~G~~i~~~eiE~~l~~-~~~v~~~~v~~~~~~~~g~~~~~~v~~~~~~~~~~~~l 524 (567)
T PRK06178 446 TGDIGKIDEQGFLHYLGRRKEMLKVNGMSVFPSEVEALLGQ-HPAVLGSAVVGRPDPDKGQVPVAFVQLKPGADLTAAAL 524 (567)
T ss_pred ecceEEEecCCeEEEEecccccEEECCEEECHHHHHHHHHh-CCCeeEEEEEcCcCcccCcceEEEEEeCCCCcCCHHHH
Confidence 555554 343 99999999999999999999999999 999999999986 34677777665432 234566
Q ss_pred HHHHHHHHHHhcCeeecEEEEEcCCCcccCCCchhhHHHHHHHHHc
Q psy14342 259 VPLVTNAVLEEHHLIVGVAVVVDPGVVPINSRGEKQRMHLRDGFLA 304 (316)
Q Consensus 259 ~~~~~~~l~~~~~~~~~~~~~~~~~~lP~t~~gKi~r~~l~~~~~~ 304 (316)
.+.+++.+. .+..+ . +.++ +++|+|++||++|++|++.+.+
T Consensus 525 ~~~~~~~l~-~~~~p-~-i~~v--~~iP~t~~GKv~r~~l~~~~~~ 565 (567)
T PRK06178 525 QAWCRENMA-VYKVP-E-IRIV--DALPMTATGKVRKQDLQALAEE 565 (567)
T ss_pred HHHHHhcCc-ccCCc-e-EEEe--ccCCCCCccceeHHHHHHHHHh
Confidence 777776665 44554 2 4454 4899999999999999998864
|
|
| >PRK06087 short chain acyl-CoA synthetase; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.4e-35 Score=280.86 Aligned_cols=293 Identities=15% Similarity=0.096 Sum_probs=213.5
Q ss_pred CeEEEEeccCCCCCceEEEEeHHHHHHHHHHHHHHhcCCCCCceEEecCCcCChhhhHHHHhhhhcCceeeeeCCccccc
Q psy14342 1 MLAYLDFSVSTTGMLAGIKMSHAAVTSLCRSMKLACELYPSRHIALCLDPYCGLGFALWVLSSVYSGHHSILIPPSEVEV 80 (316)
Q Consensus 1 ~~a~i~~TSGTTG~PK~V~~t~~~l~~~~~~~~~~~~~~~~d~~l~~~p~~h~~g~~~~~~~~l~~G~~~v~~~~~~~~~ 80 (316)
|+++|+|||||||.||+|.++|.++......+...+++.++|+++.++|++|.+|++..++.++..|+++++.+..
T Consensus 188 d~a~i~~TSGTTG~PK~v~~t~~~l~~~~~~~~~~~~~~~~d~~l~~~pl~h~~g~~~~~~~~l~~g~~~~~~~~~---- 263 (547)
T PRK06087 188 ELAAVLFTSGTEGLPKGVMLTHNNILASERAYCARLNLTWQDVFMMPAPLGHATGFLHGVTAPFLIGARSVLLDIF---- 263 (547)
T ss_pred CeEEEEeCCCCCCCCcEEEEecHHHHHHHHHHHHhcCCCCCCeEEEecchHHHHHHHHHHHHHHhcCCEEEecCCC----
Confidence 5799999999999999999999999888888888888999999999999999999988888999999999987643
Q ss_pred ChHHHHHHHhccceeeEEecccchhhHHhhHHhhhh---hcccccccc----------------cccccccchhccCCCC
Q psy14342 81 NPALWLSAVSQYRVRDTFCSYGMLAGIKMSHAAVTS---LCRSMKLAC----------------ELYPSRHIALCLDPYC 141 (316)
Q Consensus 81 ~~~~~~~~~~~~~~t~~~~~~~~~~~l~~~~~~~~~---~~~~~~ls~----------------e~~~~yG~te~~~~~~ 141 (316)
++..+++.++++++++++..|+.+..+......... ..+.+-..+ .+++.||+||++....
T Consensus 264 ~~~~~~~~i~~~~~t~~~~~~~~~~~~l~~~~~~~~~~~~lr~i~~gG~~~~~~~~~~~~~~~~~l~~~YG~TE~~~~~~ 343 (547)
T PRK06087 264 TPDACLALLEQQRCTCMLGATPFIYDLLNLLEKQPADLSALRFFLCGGTTIPKKVARECQQRGIKLLSVYGSTESSPHAV 343 (547)
T ss_pred CHHHHHHHHHHcCCCEEeccHHHHHHHHhccccCCCCCCCeEEEEEcCCCCCHHHHHHHHHcCCcEEEEecccccCCccc
Confidence 688999999999999888777766544332211100 011111111 2888999999875332
Q ss_pred CCCceEEEEeeeccCcccccCCCce-EEecCc-----------eEEecC---CCcccCCCcC-----------CCCceee
Q psy14342 142 GLGFALWVLSSVYSGHHSILIPPSE-VEVNPA-----------LWLSAV---SQYRVRDTFC-----------SCNGALY 195 (316)
Q Consensus 142 ~~~~~~~~~~~~~~g~~~~~~~g~~-~i~d~~-----------l~v~~~---~gY~~~~~~~-----------~~d~g~~ 195 (316)
...... .....+..+.+++|+. +++|++ |+++|+ .|||++++.+ ++|.|++
T Consensus 344 ~~~~~~---~~~~~~~~G~~~~~~~~~i~d~~~~~~~~g~~Gel~v~g~~~~~gy~~~~~~~~~~~~~~g~~~TGDl~~~ 420 (547)
T PRK06087 344 VNLDDP---LSRFMHTDGYAAAGVEIKVVDEARKTLPPGCEGEEASRGPNVFMGYLDEPELTARALDEEGWYYSGDLCRM 420 (547)
T ss_pred cCCCcc---hhhcCCcCCccCCCceEEEEcCCCCCCcCCCcceEEEecccccccccCCHHHHHHHhCCCCCcCcCceEEE
Confidence 211100 0011123445789998 777753 899999 8999986553 2255555
Q ss_pred ec-Cc---CCcccceeEECCcccChHhHHHHHHHhccccceeEEEeeC-----CcEEEEEEecCC--chhhcchHHHHHH
Q psy14342 196 QG-AE---RLALDETIMLRGMRYHPIDIENSVMRAHKKIAECAVFTWT-----NLLVVVVELDGN--ESEALDLVPLVTN 264 (316)
Q Consensus 196 ~~-g~---~GR~dd~i~~~G~~v~p~eIE~~l~~~~p~v~~~~v~~~~-----~~~~~~v~~~~~--~~~~~~l~~~~~~ 264 (316)
++ |. .||.||+|+.+|++|+|.+||++|.+ +|.|.++++++.. +++++++..... ..+.+++.+.+++
T Consensus 421 ~~~g~l~i~GR~~d~i~~~G~~v~p~~iE~~l~~-~~~v~~~~v~~~~~~~~g~~~~~~v~~~~~~~~~~~~~~~~~~~~ 499 (547)
T PRK06087 421 DEAGYIKITGRKKDIIVRGGENISSREVEDILLQ-HPKIHDACVVAMPDERLGERSCAYVVLKAPHHSLTLEEVVAFFSR 499 (547)
T ss_pred CCCCCEEEEecchhhhhcCCEEECHHHHHHHHHh-CCCeeEEEEEecCCCCcCceEEEEEEECCCCCCCCHHHHHHHHHh
Confidence 43 33 99999999999999999999999999 9999999999873 467777766542 1222445555443
Q ss_pred HHHHhcCeeecEEEEEcCCCcccCCCchhhHHHHHHHHHc
Q psy14342 265 AVLEEHHLIVGVAVVVDPGVVPINSRGEKQRMHLRDGFLA 304 (316)
Q Consensus 265 ~l~~~~~~~~~~~~~~~~~~lP~t~~gKi~r~~l~~~~~~ 304 (316)
.....+..| ..+.+++ +||+|++||++|++|++.+.+
T Consensus 500 ~~l~~~~~P-~~i~~v~--~iP~t~sGK~~r~~l~~~~~~ 536 (547)
T PRK06087 500 KRVAKYKYP-EHIVVID--KLPRTASGKIQKFLLRKDIMR 536 (547)
T ss_pred ccccccCCC-eEEEEec--cCCCCCCCcCcHHHHHHHHHH
Confidence 222234443 4566665 899999999999999998876
|
|
| >PRK12582 acyl-CoA synthetase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.5e-35 Score=283.75 Aligned_cols=305 Identities=10% Similarity=0.019 Sum_probs=210.7
Q ss_pred CeEEEEeccCCCCCceEEEEeHHHHHHHHHHHHHHhcCCC---CCceEEecCCcCChhhhHHHHhhhhcCceeeeeCCcc
Q psy14342 1 MLAYLDFSVSTTGMLAGIKMSHAAVTSLCRSMKLACELYP---SRHIALCLDPYCGLGFALWVLSSVYSGHHSILIPPSE 77 (316)
Q Consensus 1 ~~a~i~~TSGTTG~PK~V~~t~~~l~~~~~~~~~~~~~~~---~d~~l~~~p~~h~~g~~~~~~~~l~~G~~~v~~~~~~ 77 (316)
|+++|+|||||||.||||++||+++..+.......+...+ .++.+.++|++|.+|+...++.++..|+++++.+...
T Consensus 221 d~a~i~yTSGTTG~PKgV~~th~~l~~~~~~~~~~~~~~~~~~~~~~l~~lPl~h~~g~~~~~~~~l~~G~tvvl~~~~~ 300 (624)
T PRK12582 221 TVAKYLFTSGSTGMPKAVINTQRMMCANIAMQEQLRPREPDPPPPVSLDWMPWNHTMGGNANFNGLLWGGGTLYIDDGKP 300 (624)
T ss_pred ceEEEEEcCCCCCCCceEEeeHHHHHHHHHHHHHhccccCCCCCceEEEechHHHHHhHHHHHHHHHhCceEEEEcCCCc
Confidence 5799999999999999999999999887776665555544 5789999999999998877788999999998865322
Q ss_pred cccChHHHHHHHhccceeeEEecccchhhHHhhHHhh-------hhhcccccccc-----------------------cc
Q psy14342 78 VEVNPALWLSAVSQYRVRDTFCSYGMLAGIKMSHAAV-------TSLCRSMKLAC-----------------------EL 127 (316)
Q Consensus 78 ~~~~~~~~~~~~~~~~~t~~~~~~~~~~~l~~~~~~~-------~~~~~~~~ls~-----------------------e~ 127 (316)
.......+++.++++++|+++.+|.++..+....... ....+.+-.++ .+
T Consensus 301 ~~~~~~~~~~~i~~~~~t~~~~vP~~~~~l~~~~~~~~~~~~~~~~slr~i~~gGa~l~~~~~~~~~~~~~~~~g~~~~l 380 (624)
T PRK12582 301 LPGMFEETIRNLREISPTVYGNVPAGYAMLAEAMEKDDALRRSFFKNLRLMAYGGATLSDDLYERMQALAVRTTGHRIPF 380 (624)
T ss_pred ccchHHHHHHHHHhcCCeEEeccCHHHHHHHHHHhhCHHHHHHHhhheeEEEecCCCCCHHHHHHHHHHHHhhcCCCceE
Confidence 1112234567788999999999998876553321100 00011111111 25
Q ss_pred cccccchhccCCCCCCCceEEEEeeeccCcccccCCCce-EEecC----ceEEecC---CCcccCCCcCCC---------
Q psy14342 128 YPSRHIALCLDPYCGLGFALWVLSSVYSGHHSILIPPSE-VEVNP----ALWLSAV---SQYRVRDTFCSC--------- 190 (316)
Q Consensus 128 ~~~yG~te~~~~~~~~~~~~~~~~~~~~g~~~~~~~g~~-~i~d~----~l~v~~~---~gY~~~~~~~~~--------- 190 (316)
++.||+||++........ .....+..|.++||++ +++++ +|+++|+ .|||++++.+..
T Consensus 381 ~~~YG~TE~~~~~~~~~~-----~~~~~~svG~p~pg~~v~i~~~G~~GEl~vrg~~v~~GY~~~p~~t~~~f~~dgw~~ 455 (624)
T PRK12582 381 YTGYGATETAPTTTGTHW-----DTERVGLIGLPLPGVELKLAPVGDKYEVRVKGPNVTPGYHKDPELTAAAFDEEGFYR 455 (624)
T ss_pred EeccccccccceeecccC-----CCCCCCCCCcCCCCcEEEEccCCCceEEEEECCcccccccCCccchhhhcCccCCcc
Confidence 678999998643321111 1112334556899999 77643 3999999 899999876542
Q ss_pred --Cceee-e----cCc---CCcccceeEE-CCcccChHhHH--HHHHHhccccceeEEEeeCC-cEEEEEEecCCc----
Q psy14342 191 --NGALY-Q----GAE---RLALDETIML-RGMRYHPIDIE--NSVMRAHKKIAECAVFTWTN-LLVVVVELDGNE---- 252 (316)
Q Consensus 191 --d~g~~-~----~g~---~GR~dd~i~~-~G~~v~p~eIE--~~l~~~~p~v~~~~v~~~~~-~~~~~v~~~~~~---- 252 (316)
|.|++ + +|. +||.||+|++ +|++|+|.+|| .++.+ ||.|.+|+|+|.++ ...+++++....
T Consensus 456 TGDlg~~~d~~~~~g~l~i~GR~~d~i~~~~G~~i~p~~iE~e~~l~~-~p~V~~a~VvG~~~~~~g~lv~p~~~~~~~~ 534 (624)
T PRK12582 456 LGDAARFVDPDDPEKGLIFDGRVAEDFKLSTGTWVSVGTLRPDAVAAC-SPVIHDAVVAGQDRAFIGLLAWPNPAACRQL 534 (624)
T ss_pred ccceEEecCCcCCCCceEEeccchhhEecCCCcEechHHHHHHHHHhc-CcchheEEEEcCCCCcEEEEEecCHHHHHHH
Confidence 66666 3 133 9999999995 89999998885 67788 99999999999965 344444432110
Q ss_pred -----------hhhcchHHHHHHHHHHhc------C-eeecEEEEEcCC----CcccCCCchhhHHHHHHHHHcCCCCcc
Q psy14342 253 -----------SEALDLVPLVTNAVLEEH------H-LIVGVAVVVDPG----VVPINSRGEKQRMHLRDGFLADQLDPI 310 (316)
Q Consensus 253 -----------~~~~~l~~~~~~~l~~~~------~-~~~~~~~~~~~~----~lP~t~~gKi~r~~l~~~~~~~~~~~~ 310 (316)
.+.+++.+.++..+.+.. . .+ ..+.+++.. ..+.|++||++|+++.+.|++ +++.+
T Consensus 535 ~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~~~~~~~~~-~~~~~~~~~~~~~~g~~t~~~~~~R~~~~~~y~~-~i~~l 612 (624)
T PRK12582 535 AGDPDAAPEDVVKHPAVLAILREGLSAHNAEAGGSSSRI-ARALLMTEPPSIDAGEITDKGYINQRAVLERRAA-LVERL 612 (624)
T ss_pred HhcCCCCHHHHhcCHHHHHHHHHHHHHHHhhcCCChhhe-EEEEEeCCCCCccCCcCCccccccHHHHHHHHHH-HHHHH
Confidence 022467777777776432 1 32 355555521 245788999999999999997 89989
Q ss_pred hhh
Q psy14342 311 YVA 313 (316)
Q Consensus 311 ~~~ 313 (316)
|+.
T Consensus 613 y~~ 615 (624)
T PRK12582 613 YAE 615 (624)
T ss_pred hcC
Confidence 864
|
|
| >PRK05691 peptide synthase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.8e-35 Score=330.69 Aligned_cols=297 Identities=15% Similarity=0.070 Sum_probs=217.3
Q ss_pred CeEEEEeccCCCCCceEEEEeHHHHHHHHHHHHHHhcCCCCCceEEecCCcCChhhhHHHHhhhhcCceeeeeCCccccc
Q psy14342 1 MLAYLDFSVSTTGMLAGIKMSHAAVTSLCRSMKLACELYPSRHIALCLDPYCGLGFALWVLSSVYSGHHSILIPPSEVEV 80 (316)
Q Consensus 1 ~~a~i~~TSGTTG~PK~V~~t~~~l~~~~~~~~~~~~~~~~d~~l~~~p~~h~~g~~~~~~~~l~~G~~~v~~~~~~~~~ 80 (316)
++|||+|||||||.||||+++|+++...+......+++.++|+++...|++|+.+.+. ++.++..|+++++++... ..
T Consensus 3870 ~~ayvi~TSGSTG~PKGV~~~h~~~~~~~~~~~~~~~~~~~~~~~~~~s~~fd~s~~~-~~~~l~~G~~l~i~~~~~-~~ 3947 (4334)
T PRK05691 3870 NLAYVIYTSGSTGLPKGVMVEQRGMLNNQLSKVPYLALSEADVIAQTASQSFDISVWQ-FLAAPLFGARVEIVPNAI-AH 3947 (4334)
T ss_pred ceEEEEECCCCCCCCCEEEeehHHHHHHHHHHHHhcCCCccceEEEecCCchhHHHHH-HHHHHhCCCEEEEcCccc-cC
Confidence 5799999999999999999999999999999889999999999999999999999887 899999999999876543 45
Q ss_pred ChHHHHHHHhccceeeEEecccchhhHHhhHHhhhhhcccccccc------------------cccccccchhccCCCCC
Q psy14342 81 NPALWLSAVSQYRVRDTFCSYGMLAGIKMSHAAVTSLCRSMKLAC------------------ELYPSRHIALCLDPYCG 142 (316)
Q Consensus 81 ~~~~~~~~~~~~~~t~~~~~~~~~~~l~~~~~~~~~~~~~~~ls~------------------e~~~~yG~te~~~~~~~ 142 (316)
+|..+++.++++++|++..+|+.+..+...........+.+-+++ .+++.||+||++.....
T Consensus 3948 ~~~~l~~~~~~~~vt~~~~~Ps~~~~l~~~~~~~~~~lr~~~~gGe~l~~~~~~~~~~~~~~~~l~n~YG~TE~t~~~~~ 4027 (4334)
T PRK05691 3948 DPQGLLAHVQAQGITVLESVPSLIQGMLAEDRQALDGLRWMLPTGEAMPPELARQWLQRYPQIGLVNAYGPAECSDDVAF 4027 (4334)
T ss_pred CHHHHHHHHHHcCCeEEEeCHHHHHHHHhhccccCCCceEEEecCCcCCHHHHHHHHHhCCCCeEEeCccCccceeEEEE
Confidence 788999999999999999999988655432211111112222222 27889999998643221
Q ss_pred CCceEEEEeeeccCcccccCCCce-EEecCc-----------eEEecC---CCcccCCCcCCC-----------------
Q psy14342 143 LGFALWVLSSVYSGHHSILIPPSE-VEVNPA-----------LWLSAV---SQYRVRDTFCSC----------------- 190 (316)
Q Consensus 143 ~~~~~~~~~~~~~g~~~~~~~g~~-~i~d~~-----------l~v~~~---~gY~~~~~~~~~----------------- 190 (316)
...... .......|.|.|+++.+ .++|++ |+++|+ .|||++++.|..
T Consensus 4028 ~~~~~~-~~~~~~~~iG~p~~~~~~~v~d~~~~~~p~g~~GEL~i~G~~v~~GY~~~~~~t~~~f~~~p~~~~~~~~yrT 4106 (4334)
T PRK05691 4028 FRVDLA-STRGSYLPIGSPTDNNRLYLLDEALELVPLGAVGELCVAGTGVGRGYVGDPLRTALAFVPHPFGAPGERLYRT 4106 (4334)
T ss_pred EEcccc-cccCCcCCCCCccCCCEEEEECCCCCCCCCCCceEEEEecccccccccCCcccchhhcccCCCCCCCceeecc
Confidence 110000 00001124556899999 887754 999999 999999877642
Q ss_pred -Cceeee-cCc---CCcccceeEECCcccChHhHHHHHHHhccccceeEEEee----CCcEEEEEEecCCchhhcchHHH
Q psy14342 191 -NGALYQ-GAE---RLALDETIMLRGMRYHPIDIENSVMRAHKKIAECAVFTW----TNLLVVVVELDGNESEALDLVPL 261 (316)
Q Consensus 191 -d~g~~~-~g~---~GR~dd~i~~~G~~v~p~eIE~~l~~~~p~v~~~~v~~~----~~~~~~~v~~~~~~~~~~~l~~~ 261 (316)
|.+.+. +|. +||.||+||++|.+|.+.|||++|.+ +|+|.+|+|+.. ++.+++++..........++.+.
T Consensus 4107 GDl~~~~~dG~l~~~GR~d~qvki~G~riel~eIE~~l~~-~~~v~~a~v~~~~~~~~~~l~a~~~~~~~~~~~~~~~~~ 4185 (4334)
T PRK05691 4107 GDLARRRSDGVLEYVGRIDHQVKIRGYRIELGEIEARLHE-QAEVREAAVAVQEGVNGKHLVGYLVPHQTVLAQGALLER 4185 (4334)
T ss_pred CcceeecCCCcEEEecccCCcEEeceEEecHHHHHHHHHh-CCCccEEEEEEecCCCCcEEEEEEeCCcccccchHHHHH
Confidence 444443 343 99999999999999999999999999 999999888754 23577777655433333334455
Q ss_pred HHHHHHHhcCeeecEEEEEcCCCcccCCCchhhHHHHHHH
Q psy14342 262 VTNAVLEEHHLIVGVAVVVDPGVVPINSRGEKQRMHLRDG 301 (316)
Q Consensus 262 ~~~~l~~~~~~~~~~~~~~~~~~lP~t~~gKi~r~~l~~~ 301 (316)
++..+.+.......+..++..+.+|+|++||++|++|.+.
T Consensus 4186 l~~~l~~~Lp~ymvP~~~~~~~~lP~t~~GKidr~~L~~~ 4225 (4334)
T PRK05691 4186 IKQRLRAELPDYMVPLHWLWLDRLPLNANGKLDRKALPAL 4225 (4334)
T ss_pred HHHHHHhhCChhhcCcceeecccCCCCCCCcccHhhcCCC
Confidence 5555554333322334455556999999999999999764
|
|
| >TIGR01923 menE O-succinylbenzoate-CoA ligase | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.4e-35 Score=270.27 Aligned_cols=280 Identities=15% Similarity=0.115 Sum_probs=208.3
Q ss_pred CeEEEEeccCCCCCceEEEEeHHHHHHHHHHHHHHhcCCCCCceEEecCCcCChhhhHHHHhhhhcCceeeeeCCccccc
Q psy14342 1 MLAYLDFSVSTTGMLAGIKMSHAAVTSLCRSMKLACELYPSRHIALCLDPYCGLGFALWVLSSVYSGHHSILIPPSEVEV 80 (316)
Q Consensus 1 ~~a~i~~TSGTTG~PK~V~~t~~~l~~~~~~~~~~~~~~~~d~~l~~~p~~h~~g~~~~~~~~l~~G~~~v~~~~~~~~~ 80 (316)
++++++|||||||.||+|.++|+++...+......++++++|+++..+|++|..++.. ++.++..|+++++.++.
T Consensus 112 ~~~~i~~TSGtTG~PK~v~~s~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~-~~~~l~~g~~~~~~~~~---- 186 (436)
T TIGR01923 112 QIATLMFTSGTTGKPKAVPHTFRNHYASAVGSKENLGFTEDDNWLLSLPLYHISGLSI-LFRWLIEGATLRIVDKF---- 186 (436)
T ss_pred ceEEEEeCCCCCCCCcEEEEehHHHHHHHHHHHhhcCCCCCceEEEccCcHhHHHHHH-HHHHHhcCceEEecchH----
Confidence 5789999999999999999999999998888888899999999999999999988865 88999999999987543
Q ss_pred ChHHHHHHHhccceeeEEecccchhhHHhhHHhhhhhcccccccc----------------cccccccchhccCCCCCCC
Q psy14342 81 NPALWLSAVSQYRVRDTFCSYGMLAGIKMSHAAVTSLCRSMKLAC----------------ELYPSRHIALCLDPYCGLG 144 (316)
Q Consensus 81 ~~~~~~~~~~~~~~t~~~~~~~~~~~l~~~~~~~~~~~~~~~ls~----------------e~~~~yG~te~~~~~~~~~ 144 (316)
..+++.+++++++++..+|+++..+........ ..+.+..++ .+++.||+||++.......
T Consensus 187 --~~~~~~l~~~~~t~~~~~P~~l~~l~~~~~~~~-~l~~~~~~G~~~~~~~~~~~~~~~~~~~~~YG~tE~~~~~~~~~ 263 (436)
T TIGR01923 187 --NQLLEMIANERVTHISLVPTQLNRLLDEGGHNE-NLRKILLGGSAIPAPLIEEAQQYGLPIYLSYGMTETCSQVTTAT 263 (436)
T ss_pred --HHHHHHHHHhCCeEEEeHHHHHHHHHhCcCCCC-ceEEEEECCCCCCHHHHHHHHHhCCceeeEecCCccchhccCcC
Confidence 278899999999999999988776554332211 111111111 3888999999975433222
Q ss_pred ceEEEEeeeccCcccccCCCce-EE-ec-----CceEEecC---CCcccCCCcC----------CCCceeeec-Cc---C
Q psy14342 145 FALWVLSSVYSGHHSILIPPSE-VE-VN-----PALWLSAV---SQYRVRDTFC----------SCNGALYQG-AE---R 200 (316)
Q Consensus 145 ~~~~~~~~~~~g~~~~~~~g~~-~i-~d-----~~l~v~~~---~gY~~~~~~~----------~~d~g~~~~-g~---~ 200 (316)
.. ........+.++++++ ++ .+ ++|+++++ .|||+++..+ ++|.|++++ |. .
T Consensus 264 ~~----~~~~~~~~G~~~~~~~~~i~~~~~~~~Gel~v~~~~~~~gy~~~~~~~~~~~~~~~~~TGD~~~~~~dg~~~~~ 339 (436)
T TIGR01923 264 PE----MLHARPDVGRPLAGREIKIKVDNKEGHGEIMVKGANLMKGYLYQGELTPAFEQQGWFNTGDIGELDGEGFLYVL 339 (436)
T ss_pred cc----ccccccCCCccCCCcEEEEEeCCCCCceEEEEECCccchhhCCChhhhhhhhcCCCeeccceEEEcCCCCEEEe
Confidence 11 0000012344789998 66 44 34999999 8999975443 235555544 33 9
Q ss_pred CcccceeEECCcccChHhHHHHHHHhccccceeEEEeeC-----CcEEEEEEecCCchhhcchHHHHHHHHHHhcCeeec
Q psy14342 201 LALDETIMLRGMRYHPIDIENSVMRAHKKIAECAVFTWT-----NLLVVVVELDGNESEALDLVPLVTNAVLEEHHLIVG 275 (316)
Q Consensus 201 GR~dd~i~~~G~~v~p~eIE~~l~~~~p~v~~~~v~~~~-----~~~~~~v~~~~~~~~~~~l~~~~~~~l~~~~~~~~~ 275 (316)
||.||+||++|++|+|.|||++|.+ +|.|.++++++.. +.+.+++...+. .+..++.+++++.+. .+..| .
T Consensus 340 GR~~d~i~~~G~~v~~~~iE~~l~~-~~~v~~~~v~~~~~~~~~~~~~~~v~~~~~-~~~~~l~~~l~~~l~-~~~~p-~ 415 (436)
T TIGR01923 340 GRRDDLIISGGENIYPEEIETVLYQ-HPGIQEAVVVPKPDAEWGQVPVAYIVSESD-ISQAKLIAYLTEKLA-KYKVP-I 415 (436)
T ss_pred ccccCeEEeCCEeeCHHHHHHHHHh-CCCeeEEEEeCCcchhcCCeeEEEEEECCC-CCHHHHHHHHHHhhh-CCCCC-e
Confidence 9999999999999999999999999 9999999999873 245555555432 344577888887776 55555 3
Q ss_pred EEEEEcCCCcccCCCchhhHHHH
Q psy14342 276 VAVVVDPGVVPINSRGEKQRMHL 298 (316)
Q Consensus 276 ~~~~~~~~~lP~t~~gKi~r~~l 298 (316)
.+.+++ +||+|++||++|++|
T Consensus 416 ~i~~~~--~iP~t~~GK~~r~~L 436 (436)
T TIGR01923 416 AFEKLD--ELPYNASGKILRNQL 436 (436)
T ss_pred EEEEec--CCCCCCCCceecccC
Confidence 455554 899999999999864
|
This model represents an enzyme, O-succinylbenzoate-CoA ligase, which is involved in the fourth step of the menaquinone biosynthesis pathway. O-succinylbenzoate-CoA ligase, together with menB - naphtoate synthase, take 2-succinylbenzoate and convert it into 1,4-di-hydroxy-2- naphtoate. |
| >PRK06710 long-chain-fatty-acid--CoA ligase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-34 Score=276.82 Aligned_cols=292 Identities=14% Similarity=0.110 Sum_probs=208.4
Q ss_pred CeEEEEeccCCCCCceEEEEeHHHHHHHHHHH-HHHhcCCC-CCceEEecCCcCChhhhHHHHhhhhcCceeeeeCCccc
Q psy14342 1 MLAYLDFSVSTTGMLAGIKMSHAAVTSLCRSM-KLACELYP-SRHIALCLDPYCGLGFALWVLSSVYSGHHSILIPPSEV 78 (316)
Q Consensus 1 ~~a~i~~TSGTTG~PK~V~~t~~~l~~~~~~~-~~~~~~~~-~d~~l~~~p~~h~~g~~~~~~~~l~~G~~~v~~~~~~~ 78 (316)
|+++++|||||||.||+|.++|+++..++... ...++... +++++.++|++|.+|+...++.++..|+++++.++.
T Consensus 207 ~~a~i~~TSGTTG~PK~v~~s~~~l~~~~~~~~~~~~~~~~~~~~~l~~~p~~~~~g~~~~~~~~l~~G~~~~~~~~~-- 284 (563)
T PRK06710 207 DLALLQYTGGTTGFPKGVMLTHKNLVSNTLMGVQWLYNCKEGEEVVLGVLPFFHVYGMTAVMNLSIMQGYKMVLIPKF-- 284 (563)
T ss_pred CEEEEEcCCCCCCCCceEEEehHHHHHHHHHHHhhccCCCCCCceEEEeCchHHHHHHHHHHHHHHHcCCeEEEcCCC--
Confidence 47899999999999999999999987654332 23344443 457788899999999877677889999999987543
Q ss_pred ccChHHHHHHHhccceeeEEecccchhhHHhhHHhh--h-hhcccccccc-----------------cccccccchhccC
Q psy14342 79 EVNPALWLSAVSQYRVRDTFCSYGMLAGIKMSHAAV--T-SLCRSMKLAC-----------------ELYPSRHIALCLD 138 (316)
Q Consensus 79 ~~~~~~~~~~~~~~~~t~~~~~~~~~~~l~~~~~~~--~-~~~~~~~ls~-----------------e~~~~yG~te~~~ 138 (316)
++..+++.+++++++++..+|+.+..+....... . ...+.+-..+ .+++.||+||++.
T Consensus 285 --~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~lr~v~~gg~~~~~~~~~~~~~~~~~~~~~~YG~tE~~~ 362 (563)
T PRK06710 285 --DMKMVFEAIKKHKVTLFPGAPTIYIALLNSPLLKEYDISSIRACISGSAPLPVEVQEKFETVTGGKLVEGYGLTESSP 362 (563)
T ss_pred --CHHHHHHHHHHcCCeEEeccHHHHHHHHcCCccccCChhhhhheeeCCCcCCHHHHHHHHHhhCCCEecccccccCcc
Confidence 5788999999999999999999876554321110 0 0011111111 2788999999875
Q ss_pred CCCCCCceEEEEeeeccCcccccCCCce-EEecCc------------eEEecC---CCcccCCCcC----------CCCc
Q psy14342 139 PYCGLGFALWVLSSVYSGHHSILIPPSE-VEVNPA------------LWLSAV---SQYRVRDTFC----------SCNG 192 (316)
Q Consensus 139 ~~~~~~~~~~~~~~~~~g~~~~~~~g~~-~i~d~~------------l~v~~~---~gY~~~~~~~----------~~d~ 192 (316)
........ .....++.+.+++|.. +++|++ |+++|+ .||+++++.+ ++|.
T Consensus 363 ~~~~~~~~----~~~~~~~~G~~~~~~~~~i~~~~~~~~~~~g~~Gel~v~g~~~~~gY~~~~~~~~~~~~~g~~~TGD~ 438 (563)
T PRK06710 363 VTHSNFLW----EKRVPGSIGVPWPDTEAMIMSLETGEALPPGEIGEIVVKGPQIMKGYWNKPEETAAVLQDGWLHTGDV 438 (563)
T ss_pred ccccCccc----ccccCCccCCCCCCCeEEEEECCCCccCCCCCceEEEEecCccchhhhCChHHHhhhcccCcccccce
Confidence 32211100 1111234455788988 777632 999999 8999987654 2355
Q ss_pred eeeec-Cc---CCcccceeEECCcccChHhHHHHHHHhccccceeEEEeeC-----CcEEEEEEecCCc-hhhcchHHHH
Q psy14342 193 ALYQG-AE---RLALDETIMLRGMRYHPIDIENSVMRAHKKIAECAVFTWT-----NLLVVVVELDGNE-SEALDLVPLV 262 (316)
Q Consensus 193 g~~~~-g~---~GR~dd~i~~~G~~v~p~eIE~~l~~~~p~v~~~~v~~~~-----~~~~~~v~~~~~~-~~~~~l~~~~ 262 (316)
|++++ |. .||.||+|+++|++|+|.|||++|.+ ||.|.+++|++.. +.+++++...+.. .+.+++.+.+
T Consensus 439 ~~~~~~g~~~~~GR~dd~i~~~G~~v~p~eiE~~l~~-~~~v~~~~v~~~~~~~~g~~~~~~v~~~~~~~~~~~~l~~~~ 517 (563)
T PRK06710 439 GYMDEDGFFYVKDRKKDMIVASGFNVYPREVEEVLYE-HEKVQEVVTIGVPDPYRGETVKAFVVLKEGTECSEEELNQFA 517 (563)
T ss_pred EEEcCCCcEEEeeccccEEEECCEEECHHHHHHHHHh-CcceeeEEEEccccCCcCceeEEEEEECCCCCCCHHHHHHHH
Confidence 65543 33 89999999999999999999999999 9999999999873 4566666655432 2335666666
Q ss_pred HHHHHHhcCeeecEEEEEcCCCcccCCCchhhHHHHHHHHHcC
Q psy14342 263 TNAVLEEHHLIVGVAVVVDPGVVPINSRGEKQRMHLRDGFLAD 305 (316)
Q Consensus 263 ~~~l~~~~~~~~~~~~~~~~~~lP~t~~gKi~r~~l~~~~~~~ 305 (316)
++.+. .+..| ..+.+++ ++|+|++||++|++|++.+...
T Consensus 518 ~~~l~-~~~~P-~~~~~v~--~iP~t~~GKi~r~~L~~~~~~~ 556 (563)
T PRK06710 518 RKYLA-AYKVP-KVYEFRD--ELPKTTVGKILRRVLIEEEKRK 556 (563)
T ss_pred HHhcc-cccCC-cEEEEcc--cCCCCccchhhHHHHHHHHhhc
Confidence 66666 44454 3455554 8999999999999999988763
|
|
| >PRK08751 putative long-chain fatty acyl CoA ligase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1e-34 Score=277.30 Aligned_cols=289 Identities=16% Similarity=0.137 Sum_probs=205.5
Q ss_pred CeEEEEeccCCCCCceEEEEeHHHHHHHHHHHHHHhc----CCCC-CceEEecCCcCChhhhHHHHhhhhcCceeeeeCC
Q psy14342 1 MLAYLDFSVSTTGMLAGIKMSHAAVTSLCRSMKLACE----LYPS-RHIALCLDPYCGLGFALWVLSSVYSGHHSILIPP 75 (316)
Q Consensus 1 ~~a~i~~TSGTTG~PK~V~~t~~~l~~~~~~~~~~~~----~~~~-d~~l~~~p~~h~~g~~~~~~~~l~~G~~~v~~~~ 75 (316)
++++++|||||||.||+|.++|.++..++......++ +.++ +.++.++|++|.+++....+.++..|++.++...
T Consensus 209 ~~~~i~~TSGTTG~PK~v~~s~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~ 288 (560)
T PRK08751 209 DIAFLQYTGGTTGVAKGAMLTHRNLVANMQQAHQWLAGTGKLEEGCEVVITALPLYHIFALTANGLVFMKIGGCNHLISN 288 (560)
T ss_pred cEEEEEcCCCCCCCCCEEEEccHHHHHHHHHHHHhhccccccCCCCceEEEecChHHHHHHHHhhhhHhhccceEEEecC
Confidence 4789999999999999999999999887776655554 3333 5667889999999987666677777877766543
Q ss_pred cccccChHHHHHHHhccceeeEEecccchhhHHhhHHhhh---hhcccccccc-----------------cccccccchh
Q psy14342 76 SEVEVNPALWLSAVSQYRVRDTFCSYGMLAGIKMSHAAVT---SLCRSMKLAC-----------------ELYPSRHIAL 135 (316)
Q Consensus 76 ~~~~~~~~~~~~~~~~~~~t~~~~~~~~~~~l~~~~~~~~---~~~~~~~ls~-----------------e~~~~yG~te 135 (316)
. .++..+++.++++++|+++.+|..+..+........ ...+.+-.++ ++++.||+||
T Consensus 289 ~---~~~~~~~~~i~~~~~t~~~~~p~~~~~l~~~~~~~~~~l~~lr~v~~gG~~~~~~~~~~~~~~~~~~~~~~YG~tE 365 (560)
T PRK08751 289 P---RDMPGFVKELKKTRFTAFTGVNTLFNGLLNTPGFDQIDFSSLKMTLGGGMAVQRSVAERWKQVTGLTLVEAYGLTE 365 (560)
T ss_pred c---CCHHHHHHHHHhcceeEecChHHHHHHHHcCcCcCCcchhhheeeeeCCCCCCHHHHHHHHHHhCCeEEEeecccc
Confidence 2 257889999999999999888888765544321100 0011111111 3888999999
Q ss_pred ccCCCCCCCceEEEEeeeccCcccccCCCce-EEecCc-----------eEEecC---CCcccCCCcCC-----------
Q psy14342 136 CLDPYCGLGFALWVLSSVYSGHHSILIPPSE-VEVNPA-----------LWLSAV---SQYRVRDTFCS----------- 189 (316)
Q Consensus 136 ~~~~~~~~~~~~~~~~~~~~g~~~~~~~g~~-~i~d~~-----------l~v~~~---~gY~~~~~~~~----------- 189 (316)
++......... .....++.+.+++|.. ++.|++ |+++|+ .|||++++.+.
T Consensus 366 ~~~~~~~~~~~----~~~~~~~vG~~~~~~~v~i~d~~~~~~~~g~~Gel~v~~~~~~~gy~~~~~~~~~~~~~~g~~~T 441 (560)
T PRK08751 366 TSPAACINPLT----LKEYNGSIGLPIPSTDACIKDDAGTVLAIGEIGELCIKGPQVMKGYWKRPEETAKVMDADGWLHT 441 (560)
T ss_pred CCCceeccccc----ccccCCCcCccCCCceEEEECCCCCCCCCCCceEEEEecCccchhhcCChhhhhhccccCCCccc
Confidence 87543221110 0112234556788988 777643 899999 89999876543
Q ss_pred CCceeeec-Cc---CCcccceeEECCcccChHhHHHHHHHhccccceeEEEeeC-----CcEEEEEEecCCchhhcchHH
Q psy14342 190 CNGALYQG-AE---RLALDETIMLRGMRYHPIDIENSVMRAHKKIAECAVFTWT-----NLLVVVVELDGNESEALDLVP 260 (316)
Q Consensus 190 ~d~g~~~~-g~---~GR~dd~i~~~G~~v~p~eIE~~l~~~~p~v~~~~v~~~~-----~~~~~~v~~~~~~~~~~~l~~ 260 (316)
+|.|++++ |. .||.||+|+++|++|+|.|||++|.+ ||.|.+++|++.. +.+.+++.......+.+++.+
T Consensus 442 GD~~~~~~~g~l~i~GR~~d~i~~~G~~v~p~eiE~~l~~-~~~v~~~~v~~~~~~~~ge~~~~~v~~~~~~~~~~~l~~ 520 (560)
T PRK08751 442 GDIARMDEQGFVYIVDRKKDMILVSGFNVYPNEIEDVIAM-MPGVLEVAAVGVPDEKSGEIVKVVIVKKDPALTAEDVKA 520 (560)
T ss_pred cceEEEcCCceEEEEeechhheeECCEEEcHHHHHHHHHh-CcCeeeeEEEecCCCCCCceEEEEEEcCCCCCCHHHHHH
Confidence 25555543 33 89999999999999999999999999 9999999999873 345555544433334457778
Q ss_pred HHHHHHHHhcCeeecEEEEEcCCCcccCCCchhhHHHHHHH
Q psy14342 261 LVTNAVLEEHHLIVGVAVVVDPGVVPINSRGEKQRMHLRDG 301 (316)
Q Consensus 261 ~~~~~l~~~~~~~~~~~~~~~~~~lP~t~~gKi~r~~l~~~ 301 (316)
.+++.+. .+..| ..+.+++ +||+|++||++|++|++.
T Consensus 521 ~~~~~l~-~~~~P-~~v~~v~--~lP~t~~gKv~r~~L~~~ 557 (560)
T PRK08751 521 HARANLT-GYKQP-RIIEFRK--ELPKTNVGKILRRELRDA 557 (560)
T ss_pred HHHHhhh-hccCC-eEEEEhh--hCCCCccccccHHHHHHh
Confidence 8887776 45454 3555555 899999999999999876
|
|
| >PRK13390 acyl-CoA synthetase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.2e-35 Score=275.17 Aligned_cols=283 Identities=16% Similarity=0.077 Sum_probs=195.8
Q ss_pred eEEEEeccCCCCCceEEEEe--HHHHHHHH----HHHHHHhcCCCCCceEEecCCcCChhhhHHHHhhhhcCceeeeeCC
Q psy14342 2 LAYLDFSVSTTGMLAGIKMS--HAAVTSLC----RSMKLACELYPSRHIALCLDPYCGLGFALWVLSSVYSGHHSILIPP 75 (316)
Q Consensus 2 ~a~i~~TSGTTG~PK~V~~t--~~~l~~~~----~~~~~~~~~~~~d~~l~~~p~~h~~g~~~~~~~~l~~G~~~v~~~~ 75 (316)
+++|+|||||||.||+|+++ |.++.... ......+++..+|+++.++|++|.+++.. .+..+..|+++++.+.
T Consensus 150 ~a~i~~TSGTTG~PKgV~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~h~~~~~~-~~~~~~~g~~~~~~~~ 228 (501)
T PRK13390 150 GAVMLYSSGTTGFPKGIQPDLPGRDVDAPGDPIVAIARAFYDISESDIYYSSAPIYHAAPLRW-CSMVHALGGTVVLAKR 228 (501)
T ss_pred cEEEEeCCCCCCCCCEEEeeccccccccchhhhHhhHHHHhCCCCCCeEEecccchhhhHHHH-HHHHHhcCceEEEcCC
Confidence 58999999999999999964 55544321 11234577888999999999999988865 3445678999988653
Q ss_pred cccccChHHHHHHHhccceeeEEecccchhhHHhhHHhh-h----hhcccccccc-----------------cccccccc
Q psy14342 76 SEVEVNPALWLSAVSQYRVRDTFCSYGMLAGIKMSHAAV-T----SLCRSMKLAC-----------------ELYPSRHI 133 (316)
Q Consensus 76 ~~~~~~~~~~~~~~~~~~~t~~~~~~~~~~~l~~~~~~~-~----~~~~~~~ls~-----------------e~~~~yG~ 133 (316)
. ++..+++.+++++++++..+|+++..+....... . ...+.+-..+ .+++.||+
T Consensus 229 ~----~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~l~~v~~~g~~~~~~~~~~~~~~~~~~~~~~YG~ 304 (501)
T PRK13390 229 F----DAQATLGHVERYRITVTQMVPTMFVRLLKLDADVRTRYDVSSLRAVIHAAAPCPVDVKHAMIDWLGPIVYEYYSS 304 (501)
T ss_pred c----CHHHHHHHHHHcCCeEEEecHHHHHHHHhccchhcccCChhhhheEEEcCCCCCHHHHHHHHHhcCCceeeeecc
Confidence 2 5889999999999999999999886654322110 0 0011111111 27788999
Q ss_pred hhccCCCCCCCceEEEEeeeccCcccccCCCce-EEecCc-----------eEEecC---CCcccCCCcCC---------
Q psy14342 134 ALCLDPYCGLGFALWVLSSVYSGHHSILIPPSE-VEVNPA-----------LWLSAV---SQYRVRDTFCS--------- 189 (316)
Q Consensus 134 te~~~~~~~~~~~~~~~~~~~~g~~~~~~~g~~-~i~d~~-----------l~v~~~---~gY~~~~~~~~--------- 189 (316)
||++.......+. .....++.+.+++| . .++|++ |+++|+ .|||++++.+.
T Consensus 305 tE~~~~~~~~~~~----~~~~~~~~G~~~~g-~~~i~d~~~~~~~~g~~Gel~v~~~~~~~gy~~~~~~t~~~~~~~~~~ 379 (501)
T PRK13390 305 TEAHGMTFIDSPD----WLAHPGSVGRSVLG-DLHICDDDGNELPAGRIGTVYFERDRLPFRYLNDPEKTAAAQHPAHPF 379 (501)
T ss_pred cccCceEEecchh----hccCCCCcCCcccc-eEEEECCCCCCCCCCCceEEEEecCCccccccCChhhhHHhhccCCCc
Confidence 9986422111110 01122344557888 5 666643 899998 89999876542
Q ss_pred ----CCceeeecCc----CCcccceeEECCcccChHhHHHHHHHhccccceeEEEeeC-----CcEEEEEEecCCchh--
Q psy14342 190 ----CNGALYQGAE----RLALDETIMLRGMRYHPIDIENSVMRAHKKIAECAVFTWT-----NLLVVVVELDGNESE-- 254 (316)
Q Consensus 190 ----~d~g~~~~g~----~GR~dd~i~~~G~~v~p~eIE~~l~~~~p~v~~~~v~~~~-----~~~~~~v~~~~~~~~-- 254 (316)
+|.|++++++ .||.||+||++|++|+|.|||++|.. ||.|.+++|++.. +++++++.+......
T Consensus 380 w~~tGDl~~~~~dg~l~~~gR~~~~i~~~G~~v~p~eIE~~l~~-~~~v~~~~v~~~~~~~~~e~~~~~v~~~~~~~~~~ 458 (501)
T PRK13390 380 WTTVGDLGSVDEDGYLYLADRKSFMIISGGVNIYPQETENALTM-HPAVHDVAVIGVPDPEMGEQVKAVIQLVEGIRGSD 458 (501)
T ss_pred eEEcCceEEECCCCeEEEeeccccceeECCeeeCHHHHHHHHHh-CCCeeEEEEEeccCcccCceeEEEEEecCCCCcch
Confidence 3555554433 99999999999999999999999998 9999999999983 456666665543211
Q ss_pred --hcchHHHHHHHHHHhcCeeecEEEEEcCCCcccCCCchhhHHHHH
Q psy14342 255 --ALDLVPLVTNAVLEEHHLIVGVAVVVDPGVVPINSRGEKQRMHLR 299 (316)
Q Consensus 255 --~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~lP~t~~gKi~r~~l~ 299 (316)
.+++.+.++..+. .+..| ..+.+++ ++|+|++||++|++|+
T Consensus 459 ~~~~~l~~~~~~~l~-~~~~P-~~~~~~~--~iP~t~~GKi~r~~L~ 501 (501)
T PRK13390 459 ELARELIDYTRSRIA-HYKAP-RSVEFVD--ELPRTPTGKLVKGLLR 501 (501)
T ss_pred hhHHHHHHHHHHhcc-cCCCC-cEEEEec--cCCCCCccceehhhcC
Confidence 2356666666655 34444 3555555 8999999999999874
|
|
| >PRK06187 long-chain-fatty-acid--CoA ligase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.7e-34 Score=271.69 Aligned_cols=296 Identities=16% Similarity=0.119 Sum_probs=220.3
Q ss_pred CeEEEEeccCCCCCceEEEEeHHHHHHHHHHHHHHhcCCCCCceEEecCCcCChhhhHHHHhhhhcCceeeeeCCccccc
Q psy14342 1 MLAYLDFSVSTTGMLAGIKMSHAAVTSLCRSMKLACELYPSRHIALCLDPYCGLGFALWVLSSVYSGHHSILIPPSEVEV 80 (316)
Q Consensus 1 ~~a~i~~TSGTTG~PK~V~~t~~~l~~~~~~~~~~~~~~~~d~~l~~~p~~h~~g~~~~~~~~l~~G~~~v~~~~~~~~~ 80 (316)
++++++|||||||.||+|.+||+++..........+++.++|+++..+|++|.+++.. .+.++..|+++++.+..
T Consensus 168 ~~~~i~~TSGtTG~PK~v~~t~~~l~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~-~~~~l~~G~~~v~~~~~---- 242 (521)
T PRK06187 168 DAAAMLYTSGTTGHPKGVVLSHRNLFLHSLAVCAWLKLSRDDVYLVIVPMFHVHAWGL-PYLALMAGAKQVIPRRF---- 242 (521)
T ss_pred ceEEEEECCCCCCCCceEEeehHHHHHHHHHHHHhhCCCCCCEEEEeCCchHHhhHHH-HHHHHHhCCEEEecCCC----
Confidence 5799999999999999999999999988888888899999999999999999998887 45599999999987653
Q ss_pred ChHHHHHHHhccceeeEEecccchhhHHhhHHhhh---hhcccccccc-----------------cccccccchhccCCC
Q psy14342 81 NPALWLSAVSQYRVRDTFCSYGMLAGIKMSHAAVT---SLCRSMKLAC-----------------ELYPSRHIALCLDPY 140 (316)
Q Consensus 81 ~~~~~~~~~~~~~~t~~~~~~~~~~~l~~~~~~~~---~~~~~~~ls~-----------------e~~~~yG~te~~~~~ 140 (316)
++..+++.++++++++++.+|+.+..+........ ...+.+-.++ .+++.||+||++...
T Consensus 243 ~~~~~~~~l~~~~~t~l~~~p~~~~~l~~~~~~~~~~~~~l~~v~~~Ge~l~~~~~~~~~~~~~~~v~~~YG~tE~~~~~ 322 (521)
T PRK06187 243 DPENLLDLIETERVTFFFAVPTIWQMLLKAPRAYFVDFSSLRLVIYGGAALPPALLREFKEKFGIDLVQGYGMTETSPVV 322 (521)
T ss_pred CHHHHHHHHHHhCCeEEEchHHHHHHHHcCcCCCccCcchhhEEEEcCcCCCHHHHHHHHHHhCcchheeeccCccCccc
Confidence 78899999999999999999998876654332210 0011111111 378899999987544
Q ss_pred CCCCc-eEEEEeeeccCcccccCCCce-EEecCc-------------eEEecC---CCcccCCCcC----------CCCc
Q psy14342 141 CGLGF-ALWVLSSVYSGHHSILIPPSE-VEVNPA-------------LWLSAV---SQYRVRDTFC----------SCNG 192 (316)
Q Consensus 141 ~~~~~-~~~~~~~~~~g~~~~~~~g~~-~i~d~~-------------l~v~~~---~gY~~~~~~~----------~~d~ 192 (316)
..... ..........++.+.+++|.. +++|++ |+++++ .||+++++.+ ++|.
T Consensus 323 ~~~~~~~~~~~~~~~~~~~G~~~~~~~~~i~~~~~~~~~~~~g~~Gel~v~~~~~~~~y~~~~~~~~~~~~~~~~~tGD~ 402 (521)
T PRK06187 323 SVLPPEDQLPGQWTKRRSAGRPLPGVEARIVDDDGDELPPDGGEVGEIIVRGPWLMQGYWNRPEATAETIDGGWLHTGDV 402 (521)
T ss_pred ccCCcccccccccccCCccccccCCeEEEEECCCCCCCCCCCCCeeEEEEECcchhhhhcCCHHHHHHHhhCCceeccce
Confidence 33322 100000112334555789988 777642 899998 8898875433 3366
Q ss_pred eeeec-Cc---CCcccceeEECCcccChHhHHHHHHHhccccceeEEEee-----CCcEEEEEEecCCc-hhhcchHHHH
Q psy14342 193 ALYQG-AE---RLALDETIMLRGMRYHPIDIENSVMRAHKKIAECAVFTW-----TNLLVVVVELDGNE-SEALDLVPLV 262 (316)
Q Consensus 193 g~~~~-g~---~GR~dd~i~~~G~~v~p~eIE~~l~~~~p~v~~~~v~~~-----~~~~~~~v~~~~~~-~~~~~l~~~~ 262 (316)
|++++ |. .||.||+|+++|.+|+|.+||+.|.+ +++|.+++|++. ++.++++++..+.. .+..++.+++
T Consensus 403 ~~~~~~g~~~~~GR~~~~i~~~G~~v~~~~IE~~l~~-~~~v~~~~v~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~l 481 (521)
T PRK06187 403 GYIDEDGYLYITDRIKDVIISGGENIYPRELEDALYG-HPAVAEVAVIGVPDEKWGERPVAVVVLKPGATLDAKELRAFL 481 (521)
T ss_pred EEEcCCCCEEEeecccceEEcCCeEECHHHHHHHHHh-CCCceEEEEEeccCCCcCceEEEEEEECCCCCCCHHHHHHHH
Confidence 66644 43 89999999999999999999999999 999999999986 34677777766543 3345677777
Q ss_pred HHHHHHhcCeeecEEEEEcCCCcccCCCchhhHHHHHHHHHcCC
Q psy14342 263 TNAVLEEHHLIVGVAVVVDPGVVPINSRGEKQRMHLRDGFLADQ 306 (316)
Q Consensus 263 ~~~l~~~~~~~~~~~~~~~~~~lP~t~~gKi~r~~l~~~~~~~~ 306 (316)
++.+. .+..| ..+.++ +++|+|++||++|++|++.|.+++
T Consensus 482 ~~~l~-~~~~p-~~i~~v--~~~P~t~~gK~~r~~l~~~~~~~~ 521 (521)
T PRK06187 482 RGRLA-KFKLP-KRIAFV--DELPRTSVGKILKRVLREQYAEGK 521 (521)
T ss_pred HHhcc-CCCCc-eEEEEc--cCCCCCCCCCeeHHHHHHHHhcCC
Confidence 76665 34343 344444 489999999999999999998763
|
|
| >PRK06018 putative acyl-CoA synthetase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.9e-34 Score=272.32 Aligned_cols=298 Identities=15% Similarity=0.077 Sum_probs=208.8
Q ss_pred CeEEEEeccCCCCCceEEEEeHHHHH-H-HHHHHHHHhcCCCCCceEEecCCcCChhhhHHHHhhhhcCceeeeeCCccc
Q psy14342 1 MLAYLDFSVSTTGMLAGIKMSHAAVT-S-LCRSMKLACELYPSRHIALCLDPYCGLGFALWVLSSVYSGHHSILIPPSEV 78 (316)
Q Consensus 1 ~~a~i~~TSGTTG~PK~V~~t~~~l~-~-~~~~~~~~~~~~~~d~~l~~~p~~h~~g~~~~~~~~l~~G~~~v~~~~~~~ 78 (316)
++++|+|||||||.||+|.+||+++. . ........++++++|+++.++|++|.+++.. .+.++..|+++++....
T Consensus 178 ~~~~i~~TSGTTG~PKgv~~s~~~~~~~~~~~~~~~~~~~~~~d~~~~~~p~~h~~~~~~-~~~~~~~g~~~v~~~~~-- 254 (542)
T PRK06018 178 TAAGMCYTSGTTGDPKGVLYSHRSNVLHALMANNGDALGTSAADTMLPVVPLFHANSWGI-AFSAPSMGTKLVMPGAK-- 254 (542)
T ss_pred ceeeEEecCCCCCCCcEEEEechhHHHHHHHHhhhhhcCCCCCCEEEEecCHHHHhhhHH-HHhhhhcCceEEccCcC--
Confidence 47899999999999999999999643 2 2233445677889999999999999988876 56788999998875422
Q ss_pred ccChHHHHHHHhccceeeEEecccchhhHHhhHHhhh---hhcccccccc----------------cccccccchhccCC
Q psy14342 79 EVNPALWLSAVSQYRVRDTFCSYGMLAGIKMSHAAVT---SLCRSMKLAC----------------ELYPSRHIALCLDP 139 (316)
Q Consensus 79 ~~~~~~~~~~~~~~~~t~~~~~~~~~~~l~~~~~~~~---~~~~~~~ls~----------------e~~~~yG~te~~~~ 139 (316)
.++..+++.++++++++++.+|+++..+........ ...+.+-..+ .+++.||+||++..
T Consensus 255 -~~~~~~~~~l~~~~~t~~~~~p~~~~~l~~~~~~~~~~~~~lr~~~~~G~~l~~~~~~~~~~~~~~~~~~YG~tE~~~~ 333 (542)
T PRK06018 255 -LDGASVYELLDTEKVTFTAGVPTVWLMLLQYMEKEGLKLPHLKMVVCGGSAMPRSMIKAFEDMGVEVRHAWGMTEMSPL 333 (542)
T ss_pred -CCHHHHHHHHHhcCCceeecCcHHHHHHHhcccccCCCcccceEEEEcCCCCCHHHHHHHHHhCCCeEeeecccccCcc
Confidence 257889999999999999999998765543222110 0011111111 27889999998754
Q ss_pred CCCCC--ceEEE----EeeeccCcccccCCCce-EEecCc-------------eEEecC---CCcccCCCcC--------
Q psy14342 140 YCGLG--FALWV----LSSVYSGHHSILIPPSE-VEVNPA-------------LWLSAV---SQYRVRDTFC-------- 188 (316)
Q Consensus 140 ~~~~~--~~~~~----~~~~~~g~~~~~~~g~~-~i~d~~-------------l~v~~~---~gY~~~~~~~-------- 188 (316)
..... +.... ......++.+.+.+|++ ++.|++ |+++|+ .|||++....
T Consensus 334 ~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~g~~i~v~d~~~~~~~~~~~~~Gel~i~g~~~~~gy~~~~~~~~~~~~~~~ 413 (542)
T PRK06018 334 GTLAALKPPFSKLPGDARLDVLQKQGYPPFGVEMKITDDAGKELPWDGKTFGRLKVRGPAVAAAYYRVDGEILDDDGFFD 413 (542)
T ss_pred cccccCccccccCCchhhhhccccCCCCCCCcEEEEECCCCCCCCCCCCceeEEEEecCCcchhhhcCcccEecCCcEEE
Confidence 32211 00000 00001123345788888 776642 789998 8999853321
Q ss_pred CCCceeeec-Cc---CCcccceeEECCcccChHhHHHHHHHhccccceeEEEee-----CCcEEEEEEecCCc-hhhcch
Q psy14342 189 SCNGALYQG-AE---RLALDETIMLRGMRYHPIDIENSVMRAHKKIAECAVFTW-----TNLLVVVVELDGNE-SEALDL 258 (316)
Q Consensus 189 ~~d~g~~~~-g~---~GR~dd~i~~~G~~v~p~eIE~~l~~~~p~v~~~~v~~~-----~~~~~~~v~~~~~~-~~~~~l 258 (316)
++|.|++++ |. .||.||+|+.+|++|+|.|||+.|.+ ||.|.+|+|++. +++..+++.+.+.. .+.+++
T Consensus 414 TGDl~~~~~~g~~~~~GR~~d~i~~~G~~v~~~eIE~~l~~-~~~v~~~~v~~~~~~~~~~~~~~~v~~~~~~~~~~~~l 492 (542)
T PRK06018 414 TGDVATIDAYGYMRITDRSKDVIKSGGEWISSIDLENLAVG-HPKVAEAAVIGVYHPKWDERPLLIVQLKPGETATREEI 492 (542)
T ss_pred cCCEEEEcCCccEEEEecCCCeEEECCEEECHHHHHHHHHh-CCcceeEEEEeccCCCcCceeEEEEEeCCCCCCCHHHH
Confidence 225555543 32 89999999999999999999999999 999999999987 34566666665543 234567
Q ss_pred HHHHHHHHHHhcCeeecEEEEEcCCCcccCCCchhhHHHHHHHHHcCCC
Q psy14342 259 VPLVTNAVLEEHHLIVGVAVVVDPGVVPINSRGEKQRMHLRDGFLADQL 307 (316)
Q Consensus 259 ~~~~~~~l~~~~~~~~~~~~~~~~~~lP~t~~gKi~r~~l~~~~~~~~~ 307 (316)
.+.+++.+. .+..| ..+.+++ +||+|++||++|++|++.|.+-.+
T Consensus 493 ~~~~~~~l~-~~~~P-~~i~~v~--~iP~t~~GKi~r~~L~~~~~~~~~ 537 (542)
T PRK06018 493 LKYMDGKIA-KWWMP-DDVAFVD--AIPHTATGKILKTALREQFKDYKL 537 (542)
T ss_pred HHHHHhhCc-cccCC-cEEEEec--cCCCCCcchhhHHHHHHHHhccCC
Confidence 777777766 44444 4566655 899999999999999999987433
|
|
| >PRK07059 Long-chain-fatty-acid--CoA ligase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=2e-34 Score=275.18 Aligned_cols=289 Identities=15% Similarity=0.161 Sum_probs=204.7
Q ss_pred CeEEEEeccCCCCCceEEEEeHHHHHHHHHHHHHHhc----CC---CCCceEEecCCcCChhhhHHHHhhhhcCceeeee
Q psy14342 1 MLAYLDFSVSTTGMLAGIKMSHAAVTSLCRSMKLACE----LY---PSRHIALCLDPYCGLGFALWVLSSVYSGHHSILI 73 (316)
Q Consensus 1 ~~a~i~~TSGTTG~PK~V~~t~~~l~~~~~~~~~~~~----~~---~~d~~l~~~p~~h~~g~~~~~~~~l~~G~~~v~~ 73 (316)
++++|+|||||||.||+|.++|+++..++......+. .. ..+.++.++|++|.+++....+.++..|++.++.
T Consensus 205 ~~a~il~TSGTTG~PK~v~~s~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pl~~~~~~~~~~~~~~~~g~~~~~~ 284 (557)
T PRK07059 205 DVAFLQYTGGTTGVSKGATLLHRNIVANVLQMEAWLQPAFEKKPRPDQLNFVCALPLYHIFALTVCGLLGMRTGGRNILI 284 (557)
T ss_pred ceEEEEeCCCCCCCCcEEEeecHHHHHHHHHHhhhhcccccccCCCCCcEEEEeCCcHHHHHHHHHHHHHHhhcceEEEe
Confidence 5799999999999999999999999877654443322 11 2345677899999998877678888889887776
Q ss_pred CCcccccChHHHHHHHhccceeeEEecccchhhHHhhHHhhhh---hccccccc-----------------ccccccccc
Q psy14342 74 PPSEVEVNPALWLSAVSQYRVRDTFCSYGMLAGIKMSHAAVTS---LCRSMKLA-----------------CELYPSRHI 133 (316)
Q Consensus 74 ~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~~~l~~~~~~~~~---~~~~~~ls-----------------~e~~~~yG~ 133 (316)
+.. .++..+++.+++++++.+..+|.++..+......... ..+.+... ..+++.||+
T Consensus 285 ~~~---~~~~~~~~~i~~~~vt~~~~~p~~~~~l~~~~~~~~~~~~~l~~~~~gg~~~~~~~~~~~~~~~~~~~~~~YG~ 361 (557)
T PRK07059 285 PNP---RDIPGFIKELKKYQVHIFPAVNTLYNALLNNPDFDKLDFSKLIVANGGGMAVQRPVAERWLEMTGCPITEGYGL 361 (557)
T ss_pred cCC---cCHHHHHHHHHHhCCeeeecCHHHHHHHHcCcCcCcCCchhheEEEeccccCCHHHHHHHHHHhCCCeeecccc
Confidence 532 2677899999999999988888877655443221000 00100001 138889999
Q ss_pred hhccCCCCCCCceEEEEeeeccCcccccCCCce-EEecCc-----------eEEecC---CCcccCCCcCC---------
Q psy14342 134 ALCLDPYCGLGFALWVLSSVYSGHHSILIPPSE-VEVNPA-----------LWLSAV---SQYRVRDTFCS--------- 189 (316)
Q Consensus 134 te~~~~~~~~~~~~~~~~~~~~g~~~~~~~g~~-~i~d~~-----------l~v~~~---~gY~~~~~~~~--------- 189 (316)
||++......... .....++.|.+++|.+ +++|++ |+++|+ .|||++++.+.
T Consensus 362 tE~~~~~~~~~~~----~~~~~~~vG~p~~g~~v~i~d~~~~~~~~g~~Gel~v~g~~~~~gY~~~~~~~~~~~~~~g~~ 437 (557)
T PRK07059 362 SETSPVATCNPVD----ATEFSGTIGLPLPSTEVSIRDDDGNDLPLGEPGEICIRGPQVMAGYWNRPDETAKVMTADGFF 437 (557)
T ss_pred ccccchhhcCCCC----CCCcCCcccCccCCcEEEEECCCCCCCCCCCceEEEEeCCccchhhhcCHHHHhhhcccCCce
Confidence 9987643322210 0011234556899998 777753 999999 89999875542
Q ss_pred --CCceeeec-Cc---CCcccceeEECCcccChHhHHHHHHHhccccceeEEEeeC-----CcEEEEEEecCCchhhcch
Q psy14342 190 --CNGALYQG-AE---RLALDETIMLRGMRYHPIDIENSVMRAHKKIAECAVFTWT-----NLLVVVVELDGNESEALDL 258 (316)
Q Consensus 190 --~d~g~~~~-g~---~GR~dd~i~~~G~~v~p~eIE~~l~~~~p~v~~~~v~~~~-----~~~~~~v~~~~~~~~~~~l 258 (316)
+|.|++++ |. .||.||+|+++|++|+|.|||++|.+ ||+|.+++|++.. +.+++++.......+.+++
T Consensus 438 ~TGDl~~~~~~g~~~~~GR~~~~i~~~G~~i~p~~iE~~l~~-~~~V~~~~v~~~~~~~~ge~~~~~v~~~~~~~~~~~l 516 (557)
T PRK07059 438 RTGDVGVMDERGYTKIVDRKKDMILVSGFNVYPNEIEEVVAS-HPGVLEVAAVGVPDEHSGEAVKLFVVKKDPALTEEDV 516 (557)
T ss_pred ecCcEEEEcCCCcEEEecccccceEECCEEEcHHHHHHHHHh-CCceeEEEEEecccCCCCeeEEEEEEeCCCCCCHHHH
Confidence 25555543 32 99999999999999999999999999 9999999999873 4566666655433344567
Q ss_pred HHHHHHHHHHhcCeeecEEEEEcCCCcccCCCchhhHHHHHHH
Q psy14342 259 VPLVTNAVLEEHHLIVGVAVVVDPGVVPINSRGEKQRMHLRDG 301 (316)
Q Consensus 259 ~~~~~~~l~~~~~~~~~~~~~~~~~~lP~t~~gKi~r~~l~~~ 301 (316)
.+.+++.+. .+..| ..+.+++ ++|+|++||++|+.|++.
T Consensus 517 ~~~~~~~l~-~~~~P-~~i~~v~--~~P~t~~GK~~r~~L~~~ 555 (557)
T PRK07059 517 KAFCKERLT-NYKRP-KFVEFRT--ELPKTNVGKILRRELRDG 555 (557)
T ss_pred HHHHHHhcc-cccCC-cEEEEec--cCCCCcccceeHHHHHhh
Confidence 777777766 44444 4566655 899999999999998753
|
|
| >TIGR02262 benz_CoA_lig benzoate-CoA ligase family | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.1e-34 Score=272.00 Aligned_cols=287 Identities=15% Similarity=0.136 Sum_probs=206.3
Q ss_pred CeEEEEeccCCCCCceEEEEeHHHHHHHHHH-HHHHhcCCCCCceEEecCCcCChhhhHHHHhhhhcCceeeeeCCcccc
Q psy14342 1 MLAYLDFSVSTTGMLAGIKMSHAAVTSLCRS-MKLACELYPSRHIALCLDPYCGLGFALWVLSSVYSGHHSILIPPSEVE 79 (316)
Q Consensus 1 ~~a~i~~TSGTTG~PK~V~~t~~~l~~~~~~-~~~~~~~~~~d~~l~~~p~~h~~g~~~~~~~~l~~G~~~v~~~~~~~~ 79 (316)
|+++++|||||||.||+|.++|+++...+.. ....++++++|+++..+|++|.+++...++.++..|+++++.++.
T Consensus 162 ~~a~i~~TSGTTG~PK~v~~s~~~~~~~~~~~~~~~~~~~~~d~~l~~~p~~~~~~~~~~~~~~l~~G~~~~~~~~~--- 238 (508)
T TIGR02262 162 DPAFWLYSSGSTGMPKGVVHTHSNPYWTAELYARNTLGIREDDVVFSAAKLFFAYGLGNALTFPMSVGATTVLMGER--- 238 (508)
T ss_pred CcEEEEeCCCCCCCCcEEEEechhHHHHHHHHhHHhcCCCCCCEEEEcCchHHHHHHHHHHHHHHHcCceEEEeCCC---
Confidence 5789999999999999999999999877665 456678899999999999999999977788899999999887643
Q ss_pred cChHHHHHHHhccceeeEEecccchhhHHhhHHhhh---hhcccccccc-----------------cccccccchhccCC
Q psy14342 80 VNPALWLSAVSQYRVRDTFCSYGMLAGIKMSHAAVT---SLCRSMKLAC-----------------ELYPSRHIALCLDP 139 (316)
Q Consensus 80 ~~~~~~~~~~~~~~~t~~~~~~~~~~~l~~~~~~~~---~~~~~~~ls~-----------------e~~~~yG~te~~~~ 139 (316)
.++..+++.+++++++.++.+|.++..+........ ...+.+-.++ ++++.||.||++..
T Consensus 239 ~~~~~~~~~i~~~~~t~~~~~P~~~~~~~~~~~~~~~~~~~l~~~~~~G~~l~~~~~~~~~~~~~~~v~~~YG~tE~~~~ 318 (508)
T TIGR02262 239 PTPDAVFDRLRRHQPTIFYGVPTLYAAMLADPNLPAEDQVRLRLCTSAGEALPAEVGQRWQARFGVDIVDGIGSTEMLHI 318 (508)
T ss_pred CCHHHHHHHHHHHCCcEEecchHHHHHHhcCccccccccccceeEEEcCCCCCHHHHHHHHHHhCCchhhCccccccCce
Confidence 267899999999999999999987654432211100 0011111111 38889999998743
Q ss_pred CCCCCceEEEEeeeccCcccccCCCce-EEecCc-----------eEEecC---CCcccCCCcC----------CCCcee
Q psy14342 140 YCGLGFALWVLSSVYSGHHSILIPPSE-VEVNPA-----------LWLSAV---SQYRVRDTFC----------SCNGAL 194 (316)
Q Consensus 140 ~~~~~~~~~~~~~~~~g~~~~~~~g~~-~i~d~~-----------l~v~~~---~gY~~~~~~~----------~~d~g~ 194 (316)
...... .....+..|.+++|++ +++|++ |+++|+ .||+++++.+ ++|.|+
T Consensus 319 ~~~~~~-----~~~~~~~~G~~~~g~~v~i~d~~~~~~~~g~~Gel~i~~~~~~~gY~~~~~~~~~~~~~~~~~TGD~~~ 393 (508)
T TIGR02262 319 FLSNLP-----GDVRYGTSGKPVPGYRLRLVGDGGQDVAAGEPGELLISGPSSATMYWNNRAKTRDTFQGEWTRSGDKYV 393 (508)
T ss_pred eecCCc-----cCCCCCCcCCCCCCcEEEEECCCCCCCCCCCeeEEEEecCccccccCCCHHHhHhhhhcCceeccceEE
Confidence 221111 1112234445789998 787642 899998 8999987654 335666
Q ss_pred eec-Cc---CCcccceeEECCcccChHhHHHHHHHhccccceeEEEeeC-----CcEEEEEEecCCchh----hcchHHH
Q psy14342 195 YQG-AE---RLALDETIMLRGMRYHPIDIENSVMRAHKKIAECAVFTWT-----NLLVVVVELDGNESE----ALDLVPL 261 (316)
Q Consensus 195 ~~~-g~---~GR~dd~i~~~G~~v~p~eIE~~l~~~~p~v~~~~v~~~~-----~~~~~~v~~~~~~~~----~~~l~~~ 261 (316)
+++ |. .||.||+|+++|++|+|.+||++|.+ ||+|.++++++.. +++.+++++.+.... .+++.+.
T Consensus 394 ~~~~g~~~~~gR~~d~i~~~G~~v~~~~ie~~l~~-~~~v~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~i~~~ 472 (508)
T TIGR02262 394 RNDDGSYTYAGRTDDMLKVSGIYVSPFEIESALIQ-HPAVLEAAVVGVEDEDGLIKPKAFIVLRPGQDIDTALETELKEH 472 (508)
T ss_pred EcCCccEEEeccccceeeeCCEEECHHHHHHHHHh-CCCeeEEEEEeccccCCCceeEEEEEeCCCCccccccHHHHHHH
Confidence 643 43 89999999999999999999999999 9999999999863 355666665543322 2344445
Q ss_pred HHHHHHHhcCeeecEEEEEcCCCcccCCCchhhHHHHHH
Q psy14342 262 VTNAVLEEHHLIVGVAVVVDPGVVPINSRGEKQRMHLRD 300 (316)
Q Consensus 262 ~~~~l~~~~~~~~~~~~~~~~~~lP~t~~gKi~r~~l~~ 300 (316)
+++.+. .+..+ ..+.++ +++|+|++||++|++|++
T Consensus 473 ~~~~l~-~~~~p-~~i~~~--~~iP~t~~gKi~r~~l~~ 507 (508)
T TIGR02262 473 VKDRLA-PYKYP-RWIVFV--DDLPKTATGKIQRFKLRE 507 (508)
T ss_pred HHHhcc-cCCCC-ceEEEe--cCCCCCCCCcEehhhccC
Confidence 554444 23333 344444 489999999999998864
|
Characterized members of this protein family include benzoate-CoA ligase, 4-hydroxybenzoate-CoA ligase, 2-aminobenzoate-CoA ligase, etc. Members are related to fatty acid and acetate CoA ligases. |
| >PTZ00216 acyl-CoA synthetase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.2e-35 Score=284.12 Aligned_cols=297 Identities=11% Similarity=0.055 Sum_probs=197.8
Q ss_pred CeEEEEeccCCCCCceEEEEeHHHHHHHHHHHHHHh----c-CCCCCceEEecCCcCChhhhHHHHhhhhcCceeeeeCC
Q psy14342 1 MLAYLDFSVSTTGMLAGIKMSHAAVTSLCRSMKLAC----E-LYPSRHIALCLDPYCGLGFALWVLSSVYSGHHSILIPP 75 (316)
Q Consensus 1 ~~a~i~~TSGTTG~PK~V~~t~~~l~~~~~~~~~~~----~-~~~~d~~l~~~p~~h~~g~~~~~~~~l~~G~~~v~~~~ 75 (316)
|+++|+|||||||.||||++||+++.+.+.+....+ + +.++|++++++|++|++++.. ....+..|+++.+.+
T Consensus 265 d~a~iiyTSGTTG~PKGV~lth~nl~~~~~~~~~~~~~~~~~~~~~d~~ls~lPl~H~~~~~~-~~~~l~~G~~v~~~~- 342 (700)
T PTZ00216 265 DLALIMYTSGTTGDPKGVMHTHGSLTAGILALEDRLNDLIGPPEEDETYCSYLPLAHIMEFGV-TNIFLARGALIGFGS- 342 (700)
T ss_pred cEEEEEEeCCCCCcCcEEEEEhHHHHHHHHHHHhhcccccCCCCCCCEEEEEChHHHHHHHHH-HHHHHHcCCEEEECC-
Confidence 589999999999999999999999998877766544 2 367899999999999998865 455577787666532
Q ss_pred cccccChHHHHH-------HHhccceeeEEecccchhhHHhhHHh-hh--------------------------------
Q psy14342 76 SEVEVNPALWLS-------AVSQYRVRDTFCSYGMLAGIKMSHAA-VT-------------------------------- 115 (316)
Q Consensus 76 ~~~~~~~~~~~~-------~~~~~~~t~~~~~~~~~~~l~~~~~~-~~-------------------------------- 115 (316)
+..+.+ .++++++|++..+|..+..+...... ..
T Consensus 343 ------~~~l~~~~~~~~~~l~~~~pT~~~~vP~~~~~l~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~ 416 (700)
T PTZ00216 343 ------PRTLTDTFARPHGDLTEFRPVFLIGVPRIFDTIKKAVEAKLPPVGSLKRRVFDHAYQSRLRALKEGKDTPYWNE 416 (700)
T ss_pred ------HHHhhhhhccccchHHHcCCcEEEechHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHHHcCCCCchHHH
Confidence 333333 67889999999999887654321100 00
Q ss_pred -------hhc-cccc--ccc-----------------cccccccchhccCCCCCCCceEEEEeeeccCcccccCCCce-E
Q psy14342 116 -------SLC-RSMK--LAC-----------------ELYPSRHIALCLDPYCGLGFALWVLSSVYSGHHSILIPPSE-V 167 (316)
Q Consensus 116 -------~~~-~~~~--ls~-----------------e~~~~yG~te~~~~~~~~~~~~~~~~~~~~g~~~~~~~g~~-~ 167 (316)
... ..++ +++ .+++.||+||++.......+ .....++.|.|+||++ +
T Consensus 417 ~v~~~~~~~~g~~lr~i~~GGa~l~~~~~~~~~~~~~~l~~~YG~TEt~~~~~~~~~-----~~~~~~svG~p~~g~evk 491 (700)
T PTZ00216 417 KVFSAPRAVLGGRVRAMLSGGGPLSAATQEFVNVVFGMVIQGWGLTETVCCGGIQRT-----GDLEPNAVGQLLKGVEMK 491 (700)
T ss_pred HHHHHHHHHhCCcEEEEEECCCCCCHHHHHHHHHHhhhHhhccCcccccccccccCC-----CCCCCCCcCCcCCCeEEE
Confidence 000 0111 111 26789999999654332221 1122345566899999 8
Q ss_pred EecC-------------ceEEecC---CCcccCCCcCCC-----------Cceeeec-Cc---CCcccceeE-ECCcccC
Q psy14342 168 EVNP-------------ALWLSAV---SQYRVRDTFCSC-----------NGALYQG-AE---RLALDETIM-LRGMRYH 215 (316)
Q Consensus 168 i~d~-------------~l~v~~~---~gY~~~~~~~~~-----------d~g~~~~-g~---~GR~dd~i~-~~G~~v~ 215 (316)
++|+ +|+++|+ .|||++++.++. |.|++++ |. +||.||+|| .+|++|+
T Consensus 492 I~d~~~~~~~~~~~~~GEL~vrG~~v~~GY~~~pe~T~~~f~~dGw~~TGDig~~d~dG~l~i~GR~kd~ik~~~G~~I~ 571 (700)
T PTZ00216 492 LLDTEEYKHTDTPEPRGEILLRGPFLFKGYYKQEELTREVLDEDGWFHTGDVGSIAANGTLRIIGRVKALAKNCLGEYIA 571 (700)
T ss_pred EeechhhccCCCCCCCceEEEcCCcccchhcCChhHhhhhccccCCeeccceEEEcCCCcEEEEEehHhheecCCCceec
Confidence 8762 2999999 999999887643 4555543 33 999999998 7999999
Q ss_pred hHhHHHHHHHhccccce--eEEEeeC--CcEEEEEEecCCch-----------------hhcchHHHHHHHHHH---hcC
Q psy14342 216 PIDIENSVMRAHKKIAE--CAVFTWT--NLLVVVVELDGNES-----------------EALDLVPLVTNAVLE---EHH 271 (316)
Q Consensus 216 p~eIE~~l~~~~p~v~~--~~v~~~~--~~~~~~v~~~~~~~-----------------~~~~l~~~~~~~l~~---~~~ 271 (316)
|.|||++|.+ ||.|.+ ++|+... ..+++++.+..... ...++.+.+.+.+.+ ..+
T Consensus 572 p~eIE~~l~~-~p~V~~~~~~v~~~~~~~~l~a~vv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~ 650 (700)
T PTZ00216 572 LEALEALYGQ-NELVVPNGVCVLVHPARSYICALVLTDEAKAMAFAKEHGIEGEYPAILKDPEFQKKATESLQETARAAG 650 (700)
T ss_pred cHHHHHHHhc-CcCcccceEEEEEecCCceEEEEEecCHHHHHHHHHHcCCCCCHHHHhcCHHHHHHHHHHHHHHHHhcC
Confidence 9999999999 999986 3344333 24566665542100 011233333333221 111
Q ss_pred e----eecEEEEEcCC----CcccCCCchhhHHHHHHHHHcCCCCcchh
Q psy14342 272 L----IVGVAVVVDPG----VVPINSRGEKQRMHLRDGFLADQLDPIYV 312 (316)
Q Consensus 272 ~----~~~~~~~~~~~----~lP~t~~gKi~r~~l~~~~~~~~~~~~~~ 312 (316)
+ .+..+.++... .-.+|+++|++|+++.+.|.+ .++.+|.
T Consensus 651 l~~~e~i~~~~~~~~~f~~~~g~lT~t~K~~R~~i~~~y~~-~i~~ly~ 698 (700)
T PTZ00216 651 RKSFEIVRHVRVLSDEWTPENGVLTAAMKLKRRVIDERYAD-LIKELFA 698 (700)
T ss_pred CCCceeEeEEEEECCCCCCCCCCCChhhccchHHHHHHHHH-HHHHHhc
Confidence 1 13345555422 223699999999999999997 8888885
|
|
| >PRK12406 long-chain-fatty-acid--CoA ligase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-33 Score=266.36 Aligned_cols=290 Identities=16% Similarity=0.144 Sum_probs=209.2
Q ss_pred CeEEEEeccCCCCCceEEEEeHHH---HHHHHHHHHHHhcCCCCCceEEecCCcCChhhhHHHHhhhhcCceeeeeCCcc
Q psy14342 1 MLAYLDFSVSTTGMLAGIKMSHAA---VTSLCRSMKLACELYPSRHIALCLDPYCGLGFALWVLSSVYSGHHSILIPPSE 77 (316)
Q Consensus 1 ~~a~i~~TSGTTG~PK~V~~t~~~---l~~~~~~~~~~~~~~~~d~~l~~~p~~h~~g~~~~~~~~l~~G~~~v~~~~~~ 77 (316)
|+++++|||||||.||+|.++|.. +..........+++.++|+++.++|++|..+..+ .+.++..|+++++.++.
T Consensus 153 ~~a~i~~TSGtTG~PK~v~~s~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~p~~~~~~~~~-~~~~~~~g~~~~~~~~~- 230 (509)
T PRK12406 153 QPQSMIYTSGTTGHPKGVRRAAPTPEQAAAAEQMRALIYGLKPGIRALLTGPLYHSAPNAY-GLRAGRLGGVLVLQPRF- 230 (509)
T ss_pred CceEEEECCCCCCCCceEEEechhHHHHHHHHHhhhhhcCCCCCceEEEEeCCcccchHHH-HHHHHhhheEEEEccCC-
Confidence 578999999999999999997654 3444445566788899999999999999988777 45678889998887532
Q ss_pred cccChHHHHHHHhccceeeEEecccchhhHHhhHHhhh-----hhcccccccc-----------------cccccccchh
Q psy14342 78 VEVNPALWLSAVSQYRVRDTFCSYGMLAGIKMSHAAVT-----SLCRSMKLAC-----------------ELYPSRHIAL 135 (316)
Q Consensus 78 ~~~~~~~~~~~~~~~~~t~~~~~~~~~~~l~~~~~~~~-----~~~~~~~ls~-----------------e~~~~yG~te 135 (316)
+|..+++.++++++++++.+|+++..+........ ...+.+-..+ .+++.||+||
T Consensus 231 ---~~~~~~~~l~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~l~~v~~gg~~~~~~~~~~~~~~~~~~~~~~YG~tE 307 (509)
T PRK12406 231 ---DPEELLQLIERHRITHMHMVPTMFIRLLKLPEEVRAKYDVSSLRHVIHAAAPCPADVKRAMIEWWGPVIYEYYGSTE 307 (509)
T ss_pred ---CHHHHHHHHHHcCCeEEEccHHHHHHHHhCchhhcccCCCCceeEEEEcCCCCCHHHHHHHHHHcCCcEEeeccccc
Confidence 68899999999999999999998876543322110 0001111111 2778999999
Q ss_pred ccCCCCCCCceEEEEeeeccCcccccCCCce-EEecCc-----------eEEecC----CCcccCCCcCCC---------
Q psy14342 136 CLDPYCGLGFALWVLSSVYSGHHSILIPPSE-VEVNPA-----------LWLSAV----SQYRVRDTFCSC--------- 190 (316)
Q Consensus 136 ~~~~~~~~~~~~~~~~~~~~g~~~~~~~g~~-~i~d~~-----------l~v~~~----~gY~~~~~~~~~--------- 190 (316)
++......... .....++.|.+++|.+ +++|++ |+++++ .||++++..+..
T Consensus 308 ~~~~~~~~~~~----~~~~~~~~G~~~~~~~~~i~d~~~~~~~~g~~Gel~v~~~~~~~~~y~~~~~~~~~~~~~~~~~T 383 (509)
T PRK12406 308 SGAVTFATSED----ALSHPGTVGKAAPGAELRFVDEDGRPLPQGEIGEIYSRIAGNPDFTYHNKPEKRAEIDRGGFITS 383 (509)
T ss_pred cCceEecCccc----ccccCCCcCccCCCcEEEEECCCCCCCCCCCceEEEEECCccccccccCCchhcccccCCCCeEE
Confidence 87532211100 0112234456889998 887753 889987 489988765422
Q ss_pred -Cceeeec-Cc---CCcccceeEECCcccChHhHHHHHHHhccccceeEEEeeC-----CcEEEEEEecCCc-hhhcchH
Q psy14342 191 -NGALYQG-AE---RLALDETIMLRGMRYHPIDIENSVMRAHKKIAECAVFTWT-----NLLVVVVELDGNE-SEALDLV 259 (316)
Q Consensus 191 -d~g~~~~-g~---~GR~dd~i~~~G~~v~p~eIE~~l~~~~p~v~~~~v~~~~-----~~~~~~v~~~~~~-~~~~~l~ 259 (316)
|.|++++ |. .||.||+||++|.+|+|.|||++|.+ +|.|.++++++.. +.++++++..+.. .+.+++.
T Consensus 384 GD~~~~~~~g~~~~~GR~~d~ik~~G~~v~~~~IE~~l~~-~~~v~~~~v~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~ 462 (509)
T PRK12406 384 GDVGYLDADGYLFLCDRKRDMVISGGVNIYPAEIEAVLHA-VPGVHDCAVFGIPDAEFGEALMAVVEPQPGATLDEADIR 462 (509)
T ss_pred ccEEEEcCCceEEEeecccceEEECCEEECHHHHHHHHHh-CCCeeEEEEEeeeccccCceeEEEEEECCCCCCCHHHHH
Confidence 5555543 33 89999999999999999999999999 9999999999883 3466767665432 2345677
Q ss_pred HHHHHHHHHhcCeeecEEEEEcCCCcccCCCchhhHHHHHHHHHc
Q psy14342 260 PLVTNAVLEEHHLIVGVAVVVDPGVVPINSRGEKQRMHLRDGFLA 304 (316)
Q Consensus 260 ~~~~~~l~~~~~~~~~~~~~~~~~~lP~t~~gKi~r~~l~~~~~~ 304 (316)
+.+++.+. .+..| ..+.++ +++|+|++||++|++|++.|.+
T Consensus 463 ~~l~~~l~-~~~~P-~~i~~~--~~iP~t~~GK~~r~~L~~~~~~ 503 (509)
T PRK12406 463 AQLKARLA-GYKVP-KHIEIM--AELPREDSGKIFKRRLRDPYWA 503 (509)
T ss_pred HHHHHhcc-cCCCC-cEEEEe--ccCCCCCccchhHHHHHHHHHh
Confidence 77777766 44443 345554 4899999999999999998775
|
|
| >PRK08276 long-chain-fatty-acid--CoA ligase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.3e-34 Score=268.39 Aligned_cols=291 Identities=15% Similarity=0.097 Sum_probs=200.8
Q ss_pred CeEEEEeccCCCCCceEEEEeHHHHHHHH------HHHHHHhcCCCCCceEEecCCcCChhhhHHHHhhhhcCceeeeeC
Q psy14342 1 MLAYLDFSVSTTGMLAGIKMSHAAVTSLC------RSMKLACELYPSRHIALCLDPYCGLGFALWVLSSVYSGHHSILIP 74 (316)
Q Consensus 1 ~~a~i~~TSGTTG~PK~V~~t~~~l~~~~------~~~~~~~~~~~~d~~l~~~p~~h~~g~~~~~~~~l~~G~~~v~~~ 74 (316)
++++++|||||||.||+|.++|.++.... ......+....+++++.++|++|..++.. .+.++..|+++++.+
T Consensus 141 ~~a~i~~TSGtTG~PK~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~p~~~~~~~~~-~~~~~~~g~~~~~~~ 219 (502)
T PRK08276 141 AGADMLYSSGTTGRPKGIKRPLPGLDPDEAPGMMLALLGFGMYGGPDSVYLSPAPLYHTAPLRF-GMSALALGGTVVVME 219 (502)
T ss_pred cceEEEECCCCCCCCceEEEccCCcchhhhhHHhhhhhhhcccCCCCCEEEEcCcHHHHHHHHH-HHHHHhccceEEEcC
Confidence 35899999999999999999987654321 11111222346788899999999988877 567899999998875
Q ss_pred CcccccChHHHHHHHhccceeeEEecccchhhHHhhHHhhhh-----hcccccccc-----------------ccccccc
Q psy14342 75 PSEVEVNPALWLSAVSQYRVRDTFCSYGMLAGIKMSHAAVTS-----LCRSMKLAC-----------------ELYPSRH 132 (316)
Q Consensus 75 ~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~~~l~~~~~~~~~-----~~~~~~ls~-----------------e~~~~yG 132 (316)
. .+|..+++.++++++++++.+|+++..+......... ..+.+-..+ .+++.||
T Consensus 220 ~----~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~lr~i~~~g~~~~~~~~~~~~~~~~~~~~~~yG 295 (502)
T PRK08276 220 K----FDAEEALALIERYRVTHSQLVPTMFVRMLKLPEEVRARYDVSSLRVAIHAAAPCPVEVKRAMIDWWGPIIHEYYA 295 (502)
T ss_pred C----CCHHHHHHHHHHhCCeEEEehHHHHHHHHhCccccCCCCCcccceEEEecCCCCCHHHHHHHHHHhCcHhhhhcc
Confidence 3 2688999999999999999999987765543321110 001111111 1678899
Q ss_pred chhccCCCCCCCceEEEEeeeccCcccccCCCce-EEecCc-----------eEEecC---CCcccCCCcCC--------
Q psy14342 133 IALCLDPYCGLGFALWVLSSVYSGHHSILIPPSE-VEVNPA-----------LWLSAV---SQYRVRDTFCS-------- 189 (316)
Q Consensus 133 ~te~~~~~~~~~~~~~~~~~~~~g~~~~~~~g~~-~i~d~~-----------l~v~~~---~gY~~~~~~~~-------- 189 (316)
+||++......... .....++.|.++ +.. ++.|++ |+++|+ .|||++++.+.
T Consensus 296 ~tE~~~~~~~~~~~----~~~~~~~~G~~~-~~~~~i~d~~~~~~~~g~~Gel~v~~~~~~~gy~~~~~~~~~~~~~~~~ 370 (502)
T PRK08276 296 SSEGGGVTVITSED----WLAHPGSVGKAV-LGEVRILDEDGNELPPGEIGTVYFEMDGYPFEYHNDPEKTAAARNPHGW 370 (502)
T ss_pred cccccceeEecCcc----ccccCCCcceec-ccEEEEECCCCCCCcCCCceEEEEECCCccchhcCCHHHHHHHhcCCCc
Confidence 99987522111100 011223444567 556 776653 899988 89999876542
Q ss_pred ---CCceeeec-Cc---CCcccceeEECCcccChHhHHHHHHHhccccceeEEEeeC-----CcEEEEEEecCCchhhc-
Q psy14342 190 ---CNGALYQG-AE---RLALDETIMLRGMRYHPIDIENSVMRAHKKIAECAVFTWT-----NLLVVVVELDGNESEAL- 256 (316)
Q Consensus 190 ---~d~g~~~~-g~---~GR~dd~i~~~G~~v~p~eIE~~l~~~~p~v~~~~v~~~~-----~~~~~~v~~~~~~~~~~- 256 (316)
+|.|++++ |. .||.||+||++|++|+|.|||++|.+ ||.|.+|++++.. +.++++++..+.....+
T Consensus 371 ~~TGD~~~~~~~g~~~~~GR~~~~i~~~G~~v~~~~iE~~i~~-~~~v~~~~v~~~~~~~~~~~~~~~v~~~~~~~~~~~ 449 (502)
T PRK08276 371 VTVGDVGYLDEDGYLYLTDRKSDMIISGGVNIYPQEIENLLVT-HPKVADVAVFGVPDEEMGERVKAVVQPADGADAGDA 449 (502)
T ss_pred eeecceEEEcCCcCEEEeccCcceEEeCCEEeCHHHHHHHHHh-CCCcceEEEEeCCCcccCceEEEEEEECCCCCCChh
Confidence 25555543 33 99999999999999999999999999 9999999999883 46777777765433233
Q ss_pred ---chHHHHHHHHHHhcCeeecEEEEEcCCCcccCCCchhhHHHHHHHHHcCC
Q psy14342 257 ---DLVPLVTNAVLEEHHLIVGVAVVVDPGVVPINSRGEKQRMHLRDGFLADQ 306 (316)
Q Consensus 257 ---~l~~~~~~~l~~~~~~~~~~~~~~~~~~lP~t~~gKi~r~~l~~~~~~~~ 306 (316)
++.+.++..+. .+..| ..+.++ +++|+|++||++|++|++.|..+.
T Consensus 450 ~~~~i~~~~~~~l~-~~~~p-~~i~~~--~~lP~t~~GKi~r~~L~~~~~~~~ 498 (502)
T PRK08276 450 LAAELIAWLRGRLA-HYKCP-RSIDFE--DELPRTPTGKLYKRRLRDRYWEGR 498 (502)
T ss_pred hHHHHHHHHHhhcc-CCCCC-cEEEEe--cCCCCCcccchhHHHHHHHHHhhh
Confidence 34455555444 23333 344444 589999999999999999987754
|
|
| >PRK08974 long-chain-fatty-acid--CoA ligase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-33 Score=270.29 Aligned_cols=292 Identities=17% Similarity=0.184 Sum_probs=207.4
Q ss_pred CeEEEEeccCCCCCceEEEEeHHHHHHHHHHHHHHhc---CCCCCceEEecCCcCChhhhHHHHhhhhcCceeeeeCCcc
Q psy14342 1 MLAYLDFSVSTTGMLAGIKMSHAAVTSLCRSMKLACE---LYPSRHIALCLDPYCGLGFALWVLSSVYSGHHSILIPPSE 77 (316)
Q Consensus 1 ~~a~i~~TSGTTG~PK~V~~t~~~l~~~~~~~~~~~~---~~~~d~~l~~~p~~h~~g~~~~~~~~l~~G~~~v~~~~~~ 77 (316)
|+++|+|||||||.||+|.++|+++..+.......+. ...++.++.++|++|.+++....+..+..|+++++..+.
T Consensus 207 ~~a~i~~TSGtTG~PK~v~~t~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~l~~g~~~~~~~~~- 285 (560)
T PRK08974 207 DLAFLQYTGGTTGVAKGAMLTHRNMLANLEQAKAAYGPLLHPGKELVVTALPLYHIFALTVNCLLFIELGGQNLLITNP- 285 (560)
T ss_pred CeEEEEECCCCCCCCcEEEEchHHHHHHHHHHHHhhccccCCCccEEEEeCcHHHHHHHHHHHHHHhhcCCeEEEecCc-
Confidence 5799999999999999999999999887655444443 234567888999999999877677888889987775432
Q ss_pred cccChHHHHHHHhccceeeEEecccchhhHHhhHHhhhh---hcccccccc-----------------cccccccchhcc
Q psy14342 78 VEVNPALWLSAVSQYRVRDTFCSYGMLAGIKMSHAAVTS---LCRSMKLAC-----------------ELYPSRHIALCL 137 (316)
Q Consensus 78 ~~~~~~~~~~~~~~~~~t~~~~~~~~~~~l~~~~~~~~~---~~~~~~ls~-----------------e~~~~yG~te~~ 137 (316)
.++..+++.+++++++.+..+|+.+..+......... ..+.+-.++ .+++.||+||++
T Consensus 286 --~~~~~~~~~i~~~~~t~~~~~p~~~~~l~~~~~~~~~~~~~lr~~~~gg~~~~~~~~~~~~~~~g~~~~~~YG~tE~~ 363 (560)
T PRK08974 286 --RDIPGFVKELKKYPFTAITGVNTLFNALLNNEEFQELDFSSLKLSVGGGMAVQQAVAERWVKLTGQYLLEGYGLTECS 363 (560)
T ss_pred --cCHHHHHHHHHhcCcceEcCcHHHHHHHHhCcCcccCCccceeEEEecCccCCHHHHHHHHHHhCCcEEeeecccccC
Confidence 2577889999999999998888887655432211000 001010111 388899999987
Q ss_pred CCCCCCCceEEEEeeeccCcccccCCCce-EEecCc-----------eEEecC---CCcccCCCcC----------CCCc
Q psy14342 138 DPYCGLGFALWVLSSVYSGHHSILIPPSE-VEVNPA-----------LWLSAV---SQYRVRDTFC----------SCNG 192 (316)
Q Consensus 138 ~~~~~~~~~~~~~~~~~~g~~~~~~~g~~-~i~d~~-----------l~v~~~---~gY~~~~~~~----------~~d~ 192 (316)
......... .....++.+.++||.+ ++.|++ |+++|+ .||++++..+ ++|.
T Consensus 364 ~~~~~~~~~----~~~~~~~~G~~~~~~~~~i~~~~~~~~~~g~~Gel~v~g~~~~~gy~~~~~~~~~~~~~g~~~TGDl 439 (560)
T PRK08974 364 PLVSVNPYD----LDYYSGSIGLPVPSTEIKLVDDDGNEVPPGEPGELWVKGPQVMLGYWQRPEATDEVIKDGWLATGDI 439 (560)
T ss_pred ceeeccCCC----CcccCCccccCcCCCEEEEECCCCCCCCCCCceEEEEecCCcchhhcCChhhhhhhhhcCCcccCCE
Confidence 543322211 0011234556899999 887753 899999 8999986553 3366
Q ss_pred eeeec-Cc---CCcccceeEECCcccChHhHHHHHHHhccccceeEEEeeCC-----cEEEEEEecCCchhhcchHHHHH
Q psy14342 193 ALYQG-AE---RLALDETIMLRGMRYHPIDIENSVMRAHKKIAECAVFTWTN-----LLVVVVELDGNESEALDLVPLVT 263 (316)
Q Consensus 193 g~~~~-g~---~GR~dd~i~~~G~~v~p~eIE~~l~~~~p~v~~~~v~~~~~-----~~~~~v~~~~~~~~~~~l~~~~~ 263 (316)
|++++ |. +||.||+|+++|++|+|.+||++|.+ ||.|.+++|++..+ .++++++..+...+.+++.+.++
T Consensus 440 ~~~~~~g~l~i~GR~~d~i~~~G~~i~~~~IE~~l~~-~~~v~~~~v~~~~~~~~g~~~~~~v~~~~~~~~~~~l~~~l~ 518 (560)
T PRK08974 440 AVMDEEGFLRIVDRKKDMILVSGFNVYPNEIEDVVML-HPKVLEVAAVGVPSEVSGEAVKIFVVKKDPSLTEEELITHCR 518 (560)
T ss_pred EEEcCCceEEEEecccceEEeCCEEECHHHHHHHHHh-CCCeeEEEEEeeecCCcceEEEEEEECCCCCCCHHHHHHHHH
Confidence 66644 43 89999999999999999999999999 99999999998843 34554443333333356666666
Q ss_pred HHHHHhcCeeecEEEEEcCCCcccCCCchhhHHHHHHHHHc
Q psy14342 264 NAVLEEHHLIVGVAVVVDPGVVPINSRGEKQRMHLRDGFLA 304 (316)
Q Consensus 264 ~~l~~~~~~~~~~~~~~~~~~lP~t~~gKi~r~~l~~~~~~ 304 (316)
+.+. .+..| ..+.++ +++|+|++||++|++|+++..+
T Consensus 519 ~~l~-~~~~P-~~~~~~--~~lP~t~~GK~~r~~l~~~~~~ 555 (560)
T PRK08974 519 RHLT-GYKVP-KLVEFR--DELPKSNVGKILRRELRDEARA 555 (560)
T ss_pred hhcc-cccCC-cEEEEh--hhCCCCCCCcEeHHHHHHHHHh
Confidence 6665 44444 344554 4899999999999999998876
|
|
| >PRK13383 acyl-CoA synthetase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.8e-33 Score=264.90 Aligned_cols=284 Identities=15% Similarity=0.111 Sum_probs=203.9
Q ss_pred eEEEEeccCCCCCceEEEEeHHHHH--HHHHHHHHHhcCCCCCceEEecCCcCChhhhHHHHhhhhcCceeeeeCCcccc
Q psy14342 2 LAYLDFSVSTTGMLAGIKMSHAAVT--SLCRSMKLACELYPSRHIALCLDPYCGLGFALWVLSSVYSGHHSILIPPSEVE 79 (316)
Q Consensus 2 ~a~i~~TSGTTG~PK~V~~t~~~l~--~~~~~~~~~~~~~~~d~~l~~~p~~h~~g~~~~~~~~l~~G~~~v~~~~~~~~ 79 (316)
+++|+|||||||.||+|.++|.... .........+++.++|+++.++|++|.+|+.. ++.++..|+++++....
T Consensus 176 ~~~il~TSGTTG~PK~v~~s~~~~~~~~~~~~~~~~~~~~~~d~~~~~~pl~h~~g~~~-~~~~l~~G~~~~~~~~~--- 251 (516)
T PRK13383 176 GRIVLLTSGTTGKPKGVPRAPQLRSAVGVWVTILDRTRLRTGSRISVAMPMFHGLGLGM-LMLTIALGGTVLTHRHF--- 251 (516)
T ss_pred CcEEEECCCCCCCCCeeeecchhhhhhhhHHhHHhhhccCCCCeEEEecCCcchhhHHH-HHHHHhcCCEEEECCCC---
Confidence 5689999999999999999997321 22222334567888999999999999999976 78889999999876432
Q ss_pred cChHHHHHHHhccceeeEEecccchhhHHhhHHhhh-----hhcccccccc-----------------cccccccchhcc
Q psy14342 80 VNPALWLSAVSQYRVRDTFCSYGMLAGIKMSHAAVT-----SLCRSMKLAC-----------------ELYPSRHIALCL 137 (316)
Q Consensus 80 ~~~~~~~~~~~~~~~t~~~~~~~~~~~l~~~~~~~~-----~~~~~~~ls~-----------------e~~~~yG~te~~ 137 (316)
++..+++.+++++++.++.+|+++..+........ ...+.+-.++ .+++.||+||++
T Consensus 252 -~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~lr~i~~gG~~l~~~~~~~~~~~~g~~v~~~YG~tE~~ 330 (516)
T PRK13383 252 -DAEAALAQASLHRADAFTAVPVVLARILELPPRVRARNPLPQLRVVMSSGDRLDPTLGQRFMDTYGDILYNGYGSTEVG 330 (516)
T ss_pred -CHHHHHHHHHHhCCcEEEecHHHHHHHHhccccccccCCCCceEEEEECCCCCCHHHHHHHHHHcCchhhhcccccccc
Confidence 57889999999999999999998876543322100 0011111111 288899999997
Q ss_pred CCCCCCCceEEEEeeeccCcccccCCCce-EEecCc-----------eEEecC---CCcccCCCc-------CCCCceee
Q psy14342 138 DPYCGLGFALWVLSSVYSGHHSILIPPSE-VEVNPA-----------LWLSAV---SQYRVRDTF-------CSCNGALY 195 (316)
Q Consensus 138 ~~~~~~~~~~~~~~~~~~g~~~~~~~g~~-~i~d~~-----------l~v~~~---~gY~~~~~~-------~~~d~g~~ 195 (316)
......... .....+..|.++||.+ +++|++ |+++|+ .||++++.. .++|.|++
T Consensus 331 ~~~~~~~~~----~~~~~~~~G~~~~~~~~~i~d~~~~~~~~g~~Gel~v~g~~~~~~Y~~~~~~~~~~g~~~TGDl~~~ 406 (516)
T PRK13383 331 IGALATPAD----LRDAPETVGKPVAGCPVRILDRNNRPVGPRVTGRIFVGGELAGTRYTDGGGKAVVDGMTSTGDMGYL 406 (516)
T ss_pred cceeccccc----cccCCCcccCCCCCcEEEEECCCCCCCCCCCceEEEEecCcccccccCCchhheecCceecceeEEE
Confidence 433221110 0111234455899999 887743 899998 899976532 14467777
Q ss_pred ecCc----CCcccceeEECCcccChHhHHHHHHHhccccceeEEEeeC-----CcEEEEEEecCCch-hhcchHHHHHHH
Q psy14342 196 QGAE----RLALDETIMLRGMRYHPIDIENSVMRAHKKIAECAVFTWT-----NLLVVVVELDGNES-EALDLVPLVTNA 265 (316)
Q Consensus 196 ~~g~----~GR~dd~i~~~G~~v~p~eIE~~l~~~~p~v~~~~v~~~~-----~~~~~~v~~~~~~~-~~~~l~~~~~~~ 265 (316)
++++ .||.||+||++|++|+|.|||++|.+ ||.|.++++++.. +.+.+++++.+... +.+++.+.++++
T Consensus 407 d~~G~l~i~GR~~~~i~~~G~~v~~~eiE~~l~~-~~~v~~~~vv~~~~~~~g~~~~~~v~~~~~~~~~~~~l~~~~~~~ 485 (516)
T PRK13383 407 DNAGRLFIVGREDDMIISGGENVYPRAVENALAA-HPAVADNAVIGVPDERFGHRLAAFVVLHPGSGVDAAQLRDYLKDR 485 (516)
T ss_pred cCCccEEEeccccceEEECCEEECHHHHHHHHHh-CCCeeEEEEEeccccccCceEEEEEEECCCCCCCHHHHHHHHHHh
Confidence 5533 99999999999999999999999999 9999999999873 45667776654322 335677777777
Q ss_pred HHHhcCeeecEEEEEcCCCcccCCCchhhHHHHH
Q psy14342 266 VLEEHHLIVGVAVVVDPGVVPINSRGEKQRMHLR 299 (316)
Q Consensus 266 l~~~~~~~~~~~~~~~~~~lP~t~~gKi~r~~l~ 299 (316)
+. .+..+ ..+.+++ ++|+|++||++|++|.
T Consensus 486 l~-~~~~p-~~i~~v~--~iP~t~~gKi~r~~L~ 515 (516)
T PRK13383 486 VS-RFEQP-RDINIVS--SIPRNPTGKVLRKELP 515 (516)
T ss_pred cc-cCCCC-cEEEEeC--CCCCCCCCcCcHHHhC
Confidence 75 45554 3566665 8999999999999873
|
|
| >TIGR03205 pimA dicarboxylate--CoA ligase PimA | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.1e-33 Score=267.23 Aligned_cols=285 Identities=17% Similarity=0.142 Sum_probs=201.9
Q ss_pred CeEEEEeccCCCCCceEEEEeHHHHHHHHHHHHHHhc------CCCCCceEEecCCcCChhhhHHHHhhhhcCceeeeeC
Q psy14342 1 MLAYLDFSVSTTGMLAGIKMSHAAVTSLCRSMKLACE------LYPSRHIALCLDPYCGLGFALWVLSSVYSGHHSILIP 74 (316)
Q Consensus 1 ~~a~i~~TSGTTG~PK~V~~t~~~l~~~~~~~~~~~~------~~~~d~~l~~~p~~h~~g~~~~~~~~l~~G~~~v~~~ 74 (316)
++++++|||||||.||+|.++|+++....... ..+. ....++++.++|++|.+++...++.++..|+++++..
T Consensus 193 ~~~~i~~TSGTTG~PK~v~~s~~~l~~~~~~~-~~~~~~~~~~~~~~~~~l~~~p~~~~~~~~~~~~~~l~~g~~~~~~~ 271 (541)
T TIGR03205 193 DVALLQYTGGTTGLPKGAMLTHGNLTSAVSIY-DVWGKPSRATRGDVERVICVLPLFHIYALTVILLRSLRRGDLISLHQ 271 (541)
T ss_pred CeEEEEECCCCCCCCcEEEEeHHHHHHHHHHH-HhhcccccccCCCCceEEEeccHHHHHHHHHHHHHHHhcCCEEEecC
Confidence 47899999999999999999999987654322 2221 2234788999999999998887888999999887764
Q ss_pred CcccccChHHHHHHHhccceeeEEecccchhhHHhhHHhhh---hhcccccccc-----------------cccccccch
Q psy14342 75 PSEVEVNPALWLSAVSQYRVRDTFCSYGMLAGIKMSHAAVT---SLCRSMKLAC-----------------ELYPSRHIA 134 (316)
Q Consensus 75 ~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~~~l~~~~~~~~---~~~~~~~ls~-----------------e~~~~yG~t 134 (316)
. .++..+++.+++++++++..+|+.+..+........ ...+.+-.++ .+++.||+|
T Consensus 272 ~----~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~l~~i~~gg~~~~~~~~~~~~~~~~~~~~~~YG~T 347 (541)
T TIGR03205 272 R----FDVAAVFRDIEEKRATVFPGVPTMWIALANDPSLEKRDLSSLATIGSGGAPLPVEVANFFERKTGLKLKSGWGMT 347 (541)
T ss_pred C----CCHHHHHHHHHHcCCeEeechHHHHHHHHhCccccccCccccceEEEccccCCHHHHHHHHHHhCCCeecccccc
Confidence 3 268899999999999999999988765543211000 0011111111 388899999
Q ss_pred hccCCCCCCCceEEEEeeeccCcccccCCCce-EEe--cC-----------ceEEecC---CCcccCCCcC---------
Q psy14342 135 LCLDPYCGLGFALWVLSSVYSGHHSILIPPSE-VEV--NP-----------ALWLSAV---SQYRVRDTFC--------- 188 (316)
Q Consensus 135 e~~~~~~~~~~~~~~~~~~~~g~~~~~~~g~~-~i~--d~-----------~l~v~~~---~gY~~~~~~~--------- 188 (316)
|++.......+. .....++.|.++++.. .+. |+ +|+++|+ .|||++++.+
T Consensus 348 E~~~~~~~~~~~----~~~~~~~~G~~~~~~~~~v~~~d~~~~~~~~g~~Gel~v~~~~~~~gy~~~~~~~~~~~~~~~~ 423 (541)
T TIGR03205 348 ETCSPGTGHPPE----GPDKPGSIGLMLPGIELDVVSLDDPTKVLPPGEVGELRIRGPNVTRGYWNRPEESAEAFVGDRF 423 (541)
T ss_pred cCCcccccCCCC----CCCCCCCcceeccCceeEEEecCCCCccCCCCCeeEEEEecCCccccccCChhhhHhhhccCCc
Confidence 997543322210 0111223444678877 543 22 1899998 8999987654
Q ss_pred -CCCceeeec-Cc---CCcccceeEECCcccChHhHHHHHHHhccccceeEEEeeC-----CcEEEEEEecCCc--hhhc
Q psy14342 189 -SCNGALYQG-AE---RLALDETIMLRGMRYHPIDIENSVMRAHKKIAECAVFTWT-----NLLVVVVELDGNE--SEAL 256 (316)
Q Consensus 189 -~~d~g~~~~-g~---~GR~dd~i~~~G~~v~p~eIE~~l~~~~p~v~~~~v~~~~-----~~~~~~v~~~~~~--~~~~ 256 (316)
++|.|++++ |. .||.||+||++|++|+|.|||++|.+ |+.|.+++|++.. +.+++++++.+.. .+.+
T Consensus 424 ~TGD~~~~~~~g~l~i~GR~~~~i~~~G~~i~~~eIE~~l~~-~~~v~~~~v~~~~~~~~~~~~~~~v~~~~~~~~~~~~ 502 (541)
T TIGR03205 424 LTGDIGYMDTDGYFFLVDRKKDMIISGGFNVYPQMIEQAIYE-HPGVQEVIVIGIPDQYRGEAAKAFVKLRPGAKPFSLD 502 (541)
T ss_pred ccCceEEEcCCceEEEEccccCeEEECCEEECHHHHHHHHHh-CCCeeeEEEEecCCcccCceEEEEEEECCCCCcCCHH
Confidence 335666644 33 99999999999999999999999999 9999999999873 4567777666432 2345
Q ss_pred chHHHHHHHHHHhcCeeecEEEEEcCCCcccCCCchhhHHHHH
Q psy14342 257 DLVPLVTNAVLEEHHLIVGVAVVVDPGVVPINSRGEKQRMHLR 299 (316)
Q Consensus 257 ~l~~~~~~~l~~~~~~~~~~~~~~~~~~lP~t~~gKi~r~~l~ 299 (316)
++.+.+++.+. .+..| ..+.+++ +||+|++||++|++|+
T Consensus 503 ~l~~~~~~~l~-~~~~P-~~i~~~~--~iP~t~~gK~~r~~l~ 541 (541)
T TIGR03205 503 ELRAFLAGKLG-KHELP-VAVEFVD--ELPRTPVGKLSRHELR 541 (541)
T ss_pred HHHHHHHhhcc-cccCC-cEEEEec--cCCCCcccceeHhhcC
Confidence 67777777776 45544 4566665 8999999999999874
|
PimA, a member of a large family of acyl-CoA ligases, is found in a characteristic operon pimFABCDE for the metabolism of pimelate and related compounds. It is found, so far, in Bradyrhizobium japonicum and several strains of Rhodopseudomonas palustris. PimA from R. palustris was shown to be active as a CoA ligase for C(7) to C(14) dicarboxylates and fatty acids. |
| >PLN02479 acetate-CoA ligase | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.2e-33 Score=265.93 Aligned_cols=295 Identities=15% Similarity=0.097 Sum_probs=199.8
Q ss_pred CeEEEEeccCCCCCceEEEEeHHHHHHHHHHHHHHhcCCCCCceEEecCCcCChhhhHHHHhhhhcCceeeeeCCccccc
Q psy14342 1 MLAYLDFSVSTTGMLAGIKMSHAAVTSLCRSMKLACELYPSRHIALCLDPYCGLGFALWVLSSVYSGHHSILIPPSEVEV 80 (316)
Q Consensus 1 ~~a~i~~TSGTTG~PK~V~~t~~~l~~~~~~~~~~~~~~~~d~~l~~~p~~h~~g~~~~~~~~l~~G~~~v~~~~~~~~~ 80 (316)
|+++++|||||||.||+|.+||+++..........+++.++|+++..+|++|.+++...++..+..|+++++. . .
T Consensus 196 ~~~~i~yTSGTTG~PKgV~~sh~~~~~~~~~~~~~~~~~~~~~~~~~~p~~h~~~~~~~~~~~~~~g~~~~~~-~----~ 270 (567)
T PLN02479 196 QSIALGYTSGTTASPKGVVLHHRGAYLMALSNALIWGMNEGAVYLWTLPMFHCNGWCFTWTLAALCGTNICLR-Q----V 270 (567)
T ss_pred cceEEEECCCCCCCCcEEEeccHHHHHHHHHHHhhcCCCCCCEEEEecchhhhhhHHHHHHHHhhcCceEecc-C----C
Confidence 3578999999999999999999998776665566778888999999999999999877555566666655542 2 2
Q ss_pred ChHHHHHHHhccceeeEEecccchhhHHhhHHhhh----hhcccccccc----------------cccccccchhccCCC
Q psy14342 81 NPALWLSAVSQYRVRDTFCSYGMLAGIKMSHAAVT----SLCRSMKLAC----------------ELYPSRHIALCLDPY 140 (316)
Q Consensus 81 ~~~~~~~~~~~~~~t~~~~~~~~~~~l~~~~~~~~----~~~~~~~ls~----------------e~~~~yG~te~~~~~ 140 (316)
++..+++.++++++++++.+|+.+..+........ ...+.+-..+ .+++.||+||++...
T Consensus 271 ~~~~~~~~l~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~l~~~~~~G~~~~~~~~~~~~~~~~~~~~~yG~tE~~~~~ 350 (567)
T PLN02479 271 TAKAIYSAIANYGVTHFCAAPVVLNTIVNAPKSETILPLPRVVHVMTAGAAPPPSVLFAMSEKGFRVTHTYGLSETYGPS 350 (567)
T ss_pred CHHHHHHHHHHcCCeEEEecHHHHHHHHhhhhhcccccccceeEEEEcCCCCCHHHHHHHHhcCCceecccccccccccc
Confidence 68899999999999999999998876544321100 0001111111 278899999985322
Q ss_pred CCCC--ceEEE----EeeeccCcccccCCCce--EEec--------------CceEEecC---CCcccCCCcCCC-----
Q psy14342 141 CGLG--FALWV----LSSVYSGHHSILIPPSE--VEVN--------------PALWLSAV---SQYRVRDTFCSC----- 190 (316)
Q Consensus 141 ~~~~--~~~~~----~~~~~~g~~~~~~~g~~--~i~d--------------~~l~v~~~---~gY~~~~~~~~~----- 190 (316)
.... +.+.. ......+..+.+.+|.. +++| ++|+++|+ .|||++++.+..
T Consensus 351 ~~~~~~~~~~~~~~~~~~~~~~~~g~~~~g~~~~~i~d~~~~~~~~~~g~~~GEl~v~g~~~~~GY~~~~~~t~~~~~~g 430 (567)
T PLN02479 351 TVCAWKPEWDSLPPEEQARLNARQGVRYIGLEGLDVVDTKTMKPVPADGKTMGEIVMRGNMVMKGYLKNPKANEEAFANG 430 (567)
T ss_pred cceeccccccccCcccccccccccCCCcCCcCceeEEcCCCCcccCCCCCCceEEEEeccchhhhhhcCcccccchhcCC
Confidence 1110 00000 00000001122344432 3332 22999998 899999887643
Q ss_pred -----CceeeecCc----CCcccceeEECCcccChHhHHHHHHHhccccceeEEEeeC-----CcEEEEEEecCCch---
Q psy14342 191 -----NGALYQGAE----RLALDETIMLRGMRYHPIDIENSVMRAHKKIAECAVFTWT-----NLLVVVVELDGNES--- 253 (316)
Q Consensus 191 -----d~g~~~~g~----~GR~dd~i~~~G~~v~p~eIE~~l~~~~p~v~~~~v~~~~-----~~~~~~v~~~~~~~--- 253 (316)
|.|++++++ .||.||+||++|++|+|.|||++|.+ ||.|.+++|++.. +.+++++.+.+...
T Consensus 431 ~~~TGDl~~~~~~g~l~~~GR~~d~i~~~G~~v~~~eIE~~l~~-~~~v~~~~v~~~~~~~~~~~~~~~v~~~~~~~~~~ 509 (567)
T PLN02479 431 WFHSGDLGVKHPDGYIEIKDRSKDIIISGGENISSLEVENVVYT-HPAVLEASVVARPDERWGESPCAFVTLKPGVDKSD 509 (567)
T ss_pred ceecceeEEEcCCccEEEeccccceEEeCCEEEcHHHHHHHHHh-CcccceeeEEeccchhcCceeEEEEEecCcccccc
Confidence 555555432 99999999999999999999999999 9999999999984 35677776654321
Q ss_pred ---hhcchHHHHHHHHHHhcCeeecEEEEEcCCCcccCCCchhhHHHHHHHHHcCC
Q psy14342 254 ---EALDLVPLVTNAVLEEHHLIVGVAVVVDPGVVPINSRGEKQRMHLRDGFLADQ 306 (316)
Q Consensus 254 ---~~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~lP~t~~gKi~r~~l~~~~~~~~ 306 (316)
..+++.+.+++.+. .+..+ ..+.+ ..+|+|++||++|++|+++....+
T Consensus 510 ~~~~~~~l~~~~~~~l~-~~~~P-~~~~~---~~iP~t~~gKv~r~~L~~~~~~~~ 560 (567)
T PLN02479 510 EAALAEDIMKFCRERLP-AYWVP-KSVVF---GPLPKTATGKIQKHVLRAKAKEMG 560 (567)
T ss_pred hhhhHHHHHHHHHhhcc-cccCC-ceEEe---ccCCCCCccCeeHHHHHHHHHhhC
Confidence 11345555555554 34444 33333 369999999999999999876633
|
|
| >PRK13391 acyl-CoA synthetase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.1e-33 Score=263.43 Aligned_cols=289 Identities=15% Similarity=0.091 Sum_probs=199.6
Q ss_pred eEEEEeccCCCCCceEEEEe--HHHHHH---HHHHHHHHhcCCCCCceEEecCCcCChhhhHHHHhhhhcCceeeeeCCc
Q psy14342 2 LAYLDFSVSTTGMLAGIKMS--HAAVTS---LCRSMKLACELYPSRHIALCLDPYCGLGFALWVLSSVYSGHHSILIPPS 76 (316)
Q Consensus 2 ~a~i~~TSGTTG~PK~V~~t--~~~l~~---~~~~~~~~~~~~~~d~~l~~~p~~h~~g~~~~~~~~l~~G~~~v~~~~~ 76 (316)
.++++|||||||.||+|.++ |.++.. ........+++.++++++.++|++|.+++.. .+.++..|+++++.+..
T Consensus 156 ~a~il~TSGtTG~PKgv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~p~~h~~~~~~-~~~~~~~g~~~~~~~~~ 234 (511)
T PRK13391 156 GTDMLYSSGTTGRPKGIKRPLPEQPPDTPLPLTAFLQRLWGFRSDMVYLSPAPLYHSAPQRA-VMLVIRLGGTVIVMEHF 234 (511)
T ss_pred ccEEEECCCCCCCCCEEEEccccchhhhhhHHHHHHHHhcCCCCCCeEEEcCCHHHHHHHHH-HHHHHHcCceEEECCCC
Confidence 57899999999999999965 555432 2334455677888899999999999988876 67889999999987532
Q ss_pred ccccChHHHHHHHhccceeeEEecccchhhHHhhHHhhh-----hhcccccccc-----------------cccccccch
Q psy14342 77 EVEVNPALWLSAVSQYRVRDTFCSYGMLAGIKMSHAAVT-----SLCRSMKLAC-----------------ELYPSRHIA 134 (316)
Q Consensus 77 ~~~~~~~~~~~~~~~~~~t~~~~~~~~~~~l~~~~~~~~-----~~~~~~~ls~-----------------e~~~~yG~t 134 (316)
+|..+++.+++++++++..+|+++..+........ ...+.+-..+ .+++.||+|
T Consensus 235 ----~~~~~~~~i~~~~~t~~~~~p~~~~~l~~~~~~~~~~~~~~~l~~~~~gg~~~~~~~~~~~~~~~g~~v~~~YG~t 310 (511)
T PRK13391 235 ----DAEQYLALIEEYGVTHTQLVPTMFSRMLKLPEEVRDKYDLSSLEVAIHAAAPCPPQVKEQMIDWWGPIIHEYYAAT 310 (511)
T ss_pred ----CHHHHHHHHHHhCCeEEEehHHHHHHHHhCchhhcccCCccceeEEEEccCCCCHHHHHHHHHHcCCceeeeeccc
Confidence 68899999999999999999998765543221110 0001111111 277889999
Q ss_pred hccCCCCCCCceEEEEeeeccCcccccCCCceEEecCc-----------eEEecC--CCcccCCCcCC------------
Q psy14342 135 LCLDPYCGLGFALWVLSSVYSGHHSILIPPSEVEVNPA-----------LWLSAV--SQYRVRDTFCS------------ 189 (316)
Q Consensus 135 e~~~~~~~~~~~~~~~~~~~~g~~~~~~~g~~~i~d~~-----------l~v~~~--~gY~~~~~~~~------------ 189 (316)
|++......... .....++.+.+++|.-+++|++ |+++|+ .|||++++.+.
T Consensus 311 E~~~~~~~~~~~----~~~~~~~vG~~~~g~~~i~d~~~~~~~~g~~Gel~~~g~~~~gy~~~~~~~~~~~~~~~~w~~T 386 (511)
T PRK13391 311 EGLGFTACDSEE----WLAHPGTVGRAMFGDLHILDDDGAELPPGEPGTIWFEGGRPFEYLNDPAKTAEARHPDGTWSTV 386 (511)
T ss_pred cccceEEecCcc----ccccCCCcCCcccceEEEECCCCCCCCCCCceEEEEecCcceEEcCChhHhHHhhccCCCEEec
Confidence 987432211110 0112234455777722665543 899999 89999766542
Q ss_pred CCceeeec-Cc---CCcccceeEECCcccChHhHHHHHHHhccccceeEEEeeC-----CcEEEEEEecCCchhh----c
Q psy14342 190 CNGALYQG-AE---RLALDETIMLRGMRYHPIDIENSVMRAHKKIAECAVFTWT-----NLLVVVVELDGNESEA----L 256 (316)
Q Consensus 190 ~d~g~~~~-g~---~GR~dd~i~~~G~~v~p~eIE~~l~~~~p~v~~~~v~~~~-----~~~~~~v~~~~~~~~~----~ 256 (316)
+|.|++++ |. .||.||+||++|++|+|.|||++|.+ ||.|.+|+|++.. +.+++++......... +
T Consensus 387 GD~g~~~~~g~l~~~gR~~~~i~~~G~~v~~~eie~~l~~-~~~v~~~~v~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~ 465 (511)
T PRK13391 387 GDIGYVDEDGYLYLTDRAAFMIISGGVNIYPQEAENLLIT-HPKVADAAVFGVPNEDLGEEVKAVVQPVDGVDPGPALAA 465 (511)
T ss_pred CCEEEECCCccEEEeccCCCEEEeCCEEECHHHHHHHHHh-CCCcceEEEEecCCcccCceeEEEEEECCCCCcccchHH
Confidence 24455543 32 89999999999999999999999999 9999999999873 3566666554432222 3
Q ss_pred chHHHHHHHHHHhcCeeecEEEEEcCCCcccCCCchhhHHHHHHHHHc
Q psy14342 257 DLVPLVTNAVLEEHHLIVGVAVVVDPGVVPINSRGEKQRMHLRDGFLA 304 (316)
Q Consensus 257 ~l~~~~~~~l~~~~~~~~~~~~~~~~~~lP~t~~gKi~r~~l~~~~~~ 304 (316)
++.++++..+. .+..| ..+.++. ++|+|++||++|+.|++.|..
T Consensus 466 ~l~~~~~~~l~-~~~~P-~~i~~~~--~~P~t~~gKv~r~~l~~~~~~ 509 (511)
T PRK13391 466 ELIAFCRQRLS-RQKCP-RSIDFED--ELPRLPTGKLYKRLLRDRYWG 509 (511)
T ss_pred HHHHHHHhhcc-cCcCC-cEEEEee--cCCCCCccceeHHHHHHHhhc
Confidence 45555555544 33343 3455544 899999999999999998864
|
|
| >PRK08162 acyl-CoA synthetase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=1e-32 Score=262.72 Aligned_cols=293 Identities=15% Similarity=0.164 Sum_probs=202.9
Q ss_pred CeEEEEeccCCCCCceEEEEeHHHHHHHHHHHHHHhcCCCCCceEEecCCcCChhhhHHHHhhhhcCceeeeeCCccccc
Q psy14342 1 MLAYLDFSVSTTGMLAGIKMSHAAVTSLCRSMKLACELYPSRHIALCLDPYCGLGFALWVLSSVYSGHHSILIPPSEVEV 80 (316)
Q Consensus 1 ~~a~i~~TSGTTG~PK~V~~t~~~l~~~~~~~~~~~~~~~~d~~l~~~p~~h~~g~~~~~~~~l~~G~~~v~~~~~~~~~ 80 (316)
|+++|+|||||||.||+|+++|+++..++......+++..+|+++..+|++|.+++...++..+ .|+.+++... .
T Consensus 183 ~~~~i~~TSGTTG~PKgv~~t~~~~~~~~~~~~~~~~~~~~~~~l~~~pl~h~~~~~~~~~~~~-~~g~~~~~~~----~ 257 (545)
T PRK08162 183 DAIALNYTSGTTGNPKGVVYHHRGAYLNALSNILAWGMPKHPVYLWTLPMFHCNGWCFPWTVAA-RAGTNVCLRK----V 257 (545)
T ss_pred CeEEEEeCCCCCCCCcEEEEecHHHHHHHHHHHHhcCCCCCCeeEeccCcHhhhhHHHHHHHHH-HccEEEEeCC----C
Confidence 4789999999999999999999988777666566677888899999999999999877555444 4555555432 2
Q ss_pred ChHHHHHHHhccceeeEEecccchhhHHhhHHhhh---hhcccccccc----------------cccccccchhccCCCC
Q psy14342 81 NPALWLSAVSQYRVRDTFCSYGMLAGIKMSHAAVT---SLCRSMKLAC----------------ELYPSRHIALCLDPYC 141 (316)
Q Consensus 81 ~~~~~~~~~~~~~~t~~~~~~~~~~~l~~~~~~~~---~~~~~~~ls~----------------e~~~~yG~te~~~~~~ 141 (316)
+|..+++.++++++|++..+|+++..+........ .....+-..+ ++++.||+||++....
T Consensus 258 ~~~~~~~~l~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~YG~tE~~~~~~ 337 (545)
T PRK08162 258 DPKLIFDLIREHGVTHYCGAPIVLSALINAPAEWRAGIDHPVHAMVAGAAPPAAVIAKMEEIGFDLTHVYGLTETYGPAT 337 (545)
T ss_pred CHHHHHHHHHHcCCeEEEechHHHHHHHhCccccccCCccceEEEECCCCCCHHHHHHHHHhCCceeecccccccCccee
Confidence 68899999999999999999998876654322110 0000111111 3889999999853322
Q ss_pred CCCc-eEEE--E---eeeccCcccccCCCc-e-EEecC--------------ceEEecC---CCcccCCCcC--------
Q psy14342 142 GLGF-ALWV--L---SSVYSGHHSILIPPS-E-VEVNP--------------ALWLSAV---SQYRVRDTFC-------- 188 (316)
Q Consensus 142 ~~~~-~~~~--~---~~~~~g~~~~~~~g~-~-~i~d~--------------~l~v~~~---~gY~~~~~~~-------- 188 (316)
.... ..+. . .....++.+++.+.. . .++|+ +|+++|+ .|||++++.+
T Consensus 338 ~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~i~d~~~~~~~~~~g~~~Gel~v~g~~~~~gY~~~~~~~~~~~~~g~ 417 (545)
T PRK08162 338 VCAWQPEWDALPLDERAQLKARQGVRYPLQEGVTVLDPDTMQPVPADGETIGEIMFRGNIVMKGYLKNPKATEEAFAGGW 417 (545)
T ss_pred ecccccccccCCccchhhccCCCCcccCCcceEEEEcCCCCcccCCCCCceeEEEEecCcchhhhcCChhhhHHHhhCCC
Confidence 1110 0000 0 000011222333332 2 44442 2899999 8999987665
Q ss_pred --CCCceeeec-Cc---CCcccceeEECCcccChHhHHHHHHHhccccceeEEEeeC-----CcEEEEEEecCCc-hhhc
Q psy14342 189 --SCNGALYQG-AE---RLALDETIMLRGMRYHPIDIENSVMRAHKKIAECAVFTWT-----NLLVVVVELDGNE-SEAL 256 (316)
Q Consensus 189 --~~d~g~~~~-g~---~GR~dd~i~~~G~~v~p~eIE~~l~~~~p~v~~~~v~~~~-----~~~~~~v~~~~~~-~~~~ 256 (316)
++|.|++++ |. +||.||+||++|++|+|.|||++|.+ ||.|.+++|++.. +.+++++++.+.. .+.+
T Consensus 418 ~~TGDl~~~d~dg~l~~~GR~~~~i~~~G~~v~~~eIE~~l~~-~~~v~~~~vv~~~~~~~~~~~~~~v~~~~~~~~~~~ 496 (545)
T PRK08162 418 FHTGDLAVLHPDGYIKIKDRSKDIIISGGENISSIEVEDVLYR-HPAVLVAAVVAKPDPKWGEVPCAFVELKDGASATEE 496 (545)
T ss_pred cccCceEEEcCCccEEEEecccceEEeCCEEECHHHHHHHHHh-CCcccEEEEEeeeccccCceEEEEEEeCCCCCCCHH
Confidence 336666654 43 99999999999999999999999999 9999999999873 3567777665433 2345
Q ss_pred chHHHHHHHHHHhcCeeecEEEEEcCCCcccCCCchhhHHHHHHHHHc
Q psy14342 257 DLVPLVTNAVLEEHHLIVGVAVVVDPGVVPINSRGEKQRMHLRDGFLA 304 (316)
Q Consensus 257 ~l~~~~~~~l~~~~~~~~~~~~~~~~~~lP~t~~gKi~r~~l~~~~~~ 304 (316)
++.+.+++.+. .+..|. .+.+ .++|+|++||++|+.|++++.+
T Consensus 497 ~l~~~~~~~l~-~~~~P~-~~~~---~~iP~t~~gK~~r~~l~~~~~~ 539 (545)
T PRK08162 497 EIIAHCREHLA-GFKVPK-AVVF---GELPKTSTGKIQKFVLREQAKS 539 (545)
T ss_pred HHHHHHHHhcc-cccCCc-EEEe---cccCCCCCcCCcHHHHHHHHhh
Confidence 67777777765 555553 3433 3699999999999999998765
|
|
| >PRK07798 acyl-CoA synthetase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-32 Score=260.45 Aligned_cols=291 Identities=14% Similarity=0.071 Sum_probs=199.5
Q ss_pred CeEEEEeccCCCCCceEEEEeHHHHHHHHHHHHHH---------hcC------CCCCceEEecCCcCChhhhHHHHhhhh
Q psy14342 1 MLAYLDFSVSTTGMLAGIKMSHAAVTSLCRSMKLA---------CEL------YPSRHIALCLDPYCGLGFALWVLSSVY 65 (316)
Q Consensus 1 ~~a~i~~TSGTTG~PK~V~~t~~~l~~~~~~~~~~---------~~~------~~~d~~l~~~p~~h~~g~~~~~~~~l~ 65 (316)
|.++|+|||||||.||+|+++|+++..+....... +.+ ..+++++..+|++|..+++. ++.++.
T Consensus 164 ~~~~i~~TSGTTG~PK~v~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pl~~~~~~~~-~~~~l~ 242 (533)
T PRK07798 164 DDLYLLYTGGTTGMPKGVMWRQEDIFRVLLGGRDFATGEPIEDEEELAKRAAAGPGMRRFPAPPLMHGAGQWA-AFAALF 242 (533)
T ss_pred CceEEEECCCCCCCCcEEEEecHHHHHHHhhhhhhhcccchhhhhhhcccccCCCCceEEEecchhhhhhHHH-HHHHHh
Confidence 35789999999999999999999987654433222 122 56788999999999999985 889999
Q ss_pred cCceeeeeCCcccccChHHHHHHHhccceeeEEecccchhh-HHhhHH-h--hh-hhcccccccc---------------
Q psy14342 66 SGHHSILIPPSEVEVNPALWLSAVSQYRVRDTFCSYGMLAG-IKMSHA-A--VT-SLCRSMKLAC--------------- 125 (316)
Q Consensus 66 ~G~~~v~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~~~-l~~~~~-~--~~-~~~~~~~ls~--------------- 125 (316)
.|+++++.+.. ..+|..+++.+++++++++.++|+.+.. +..... . .. ...+.+-..+
T Consensus 243 ~G~~~~~~~~~--~~~~~~~~~~i~~~~~t~~~~~~~~~~~~l~~~~~~~~~~~~~~l~~i~~gG~~~~~~~~~~~~~~~ 320 (533)
T PRK07798 243 SGQTVVLLPDV--RFDADEVWRTIEREKVNVITIVGDAMARPLLDALEARGPYDLSSLFAIASGGALFSPSVKEALLELL 320 (533)
T ss_pred cCceEEEecCC--CcCHHHHHHHHHHhCCeEEEechHHHHHHHHHHhcccccCCCCceEEEEECCCCCCHHHHHHHHHHc
Confidence 99999998744 2368899999999999998888765432 211111 0 00 0011111111
Q ss_pred ---cccccccchhccCCCCCCCceEEEEeeeccCcccccCCCce-EEecCc------------eEEecC---CCcccCCC
Q psy14342 126 ---ELYPSRHIALCLDPYCGLGFALWVLSSVYSGHHSILIPPSE-VEVNPA------------LWLSAV---SQYRVRDT 186 (316)
Q Consensus 126 ---e~~~~yG~te~~~~~~~~~~~~~~~~~~~~g~~~~~~~g~~-~i~d~~------------l~v~~~---~gY~~~~~ 186 (316)
++++.||+||++......... .....|. ..+.++.. .++|++ +.++++ .|||+++.
T Consensus 321 ~~~~~~~~YG~tE~~~~~~~~~~~----~~~~~g~-~~~~~~~~~~i~~~~~~~~~~g~~~~g~l~~~~~~~~gy~~~~~ 395 (533)
T PRK07798 321 PNVVLTDSIGSSETGFGGSGTVAK----GAVHTGG-PRFTIGPRTVVLDEDGNPVEPGSGEIGWIARRGHIPLGYYKDPE 395 (533)
T ss_pred CCCeEEeeecccccccccccCCCC----CCccCCC-CccCCCceEEEECCCCCCCCCCCCCeeEEEeecCccccccCChh
Confidence 277889999985433221110 0011110 13566666 666553 344555 89999876
Q ss_pred cCC--------------CCceeee-cCc---CCcccceeEECCcccChHhHHHHHHHhccccceeEEEeeC-----CcEE
Q psy14342 187 FCS--------------CNGALYQ-GAE---RLALDETIMLRGMRYHPIDIENSVMRAHKKIAECAVFTWT-----NLLV 243 (316)
Q Consensus 187 ~~~--------------~d~g~~~-~g~---~GR~dd~i~~~G~~v~p~eIE~~l~~~~p~v~~~~v~~~~-----~~~~ 243 (316)
.+. +|.|+++ +|. .||.||+||.+|++|+|.|||++|.+ +|.|.+++|++.. +.+.
T Consensus 396 ~t~~~f~~~~~~~~~~TGD~~~~~~~g~l~~~GR~~~~i~~~G~~v~~~eIE~~l~~-~~~v~~~~v~~~~~~~~~~~~~ 474 (533)
T PRK07798 396 KTAETFPTIDGVRYAIPGDRARVEADGTITLLGRGSVCINTGGEKVFPEEVEEALKA-HPDVADALVVGVPDERWGQEVV 474 (533)
T ss_pred hhHHhhccCCCCceEEcCcEEEEcCCCcEEEEccccceEecCCEEeCHHHHHHHHHh-CccceeEEEEeccCcccCceEE
Confidence 442 2555554 343 99999999999999999999999999 9999999999863 3566
Q ss_pred EEEEecCCc-hhhcchHHHHHHHHHHhcCeeecEEEEEcCCCcccCCCchhhHHHHHHHHHc
Q psy14342 244 VVVELDGNE-SEALDLVPLVTNAVLEEHHLIVGVAVVVDPGVVPINSRGEKQRMHLRDGFLA 304 (316)
Q Consensus 244 ~~v~~~~~~-~~~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~lP~t~~gKi~r~~l~~~~~~ 304 (316)
+++++.+.. .+.+++.+.+++.+. .+..| ..+.++ +++|+|++||++|+.|++...+
T Consensus 475 ~~v~~~~~~~~~~~~l~~~l~~~l~-~~~~P-~~i~~~--~~iP~t~~GK~~~~~~~~~~~~ 532 (533)
T PRK07798 475 AVVQLREGARPDLAELRAHCRSSLA-GYKVP-RAIWFV--DEVQRSPAGKADYRWAKEQAAE 532 (533)
T ss_pred EEEEECCCCCCCHHHHHHHHhhhcc-cCCCC-eEEEEc--ccCCCCCcchhhHHHHhhhhcc
Confidence 666655432 344677777877776 45554 344554 4899999999999999987653
|
|
| >TIGR02372 4_coum_CoA_lig 4-coumarate--CoA ligase, photoactive yellow protein activation family | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.5e-32 Score=243.73 Aligned_cols=265 Identities=11% Similarity=0.039 Sum_probs=180.7
Q ss_pred eEEEEeccCCCCCceEEEEeHHHHHHHHHHHHHHhcCCC--CCceEEecCCcCChhhhHHHHhhhhcCceeeeeCCcccc
Q psy14342 2 LAYLDFSVSTTGMLAGIKMSHAAVTSLCRSMKLACELYP--SRHIALCLDPYCGLGFALWVLSSVYSGHHSILIPPSEVE 79 (316)
Q Consensus 2 ~a~i~~TSGTTG~PK~V~~t~~~l~~~~~~~~~~~~~~~--~d~~l~~~p~~h~~g~~~~~~~~l~~G~~~v~~~~~~~~ 79 (316)
.++++|||||||.||+|.+||+++..++..+...++++. .|+++.++|++|.+|+.+.++.++..|+++++.++.
T Consensus 97 ~~~i~~TSGTTG~PKgV~~sh~~l~~~~~~~~~~~~~~~~~~dr~l~~~Pl~h~~g~~~~~l~~l~~G~~vv~~~~~--- 173 (386)
T TIGR02372 97 ARFTFATSGSTGTPKPVTHSWAALLSEAQAIAKILGERPPPVRRVISCVPAHHLYGFLFSCLLPSRRGLEAKQLAAA--- 173 (386)
T ss_pred ceEEEECCCCCCCCceeEeeHHHHHHHHHHHHHHhCcCCCCCCeEEEeCCcHHHHHHHHHHHHHHHCCCeEEecCCC---
Confidence 578999999999999999999999998888888787754 467999999999999877788899999999887542
Q ss_pred cChHHHHHHHhccceeeEEecccchhhHHhhHHhhhhhc---ccccccc------------cccccccchhccCCCCCCC
Q psy14342 80 VNPALWLSAVSQYRVRDTFCSYGMLAGIKMSHAAVTSLC---RSMKLAC------------ELYPSRHIALCLDPYCGLG 144 (316)
Q Consensus 80 ~~~~~~~~~~~~~~~t~~~~~~~~~~~l~~~~~~~~~~~---~~~~ls~------------e~~~~yG~te~~~~~~~~~ 144 (316)
+|..+++.++.. +++..+|+++..+.......+... .+..++. .+++.||+||+++......
T Consensus 174 -~~~~~l~~i~~~--t~~~~~P~~l~~l~~~~~~l~slr~i~gGa~l~~~l~~~~~~~g~~~v~~~YG~TEt~~i~~~~~ 250 (386)
T TIGR02372 174 -PASGIMRHARPG--DLIVGTPFIWEQLADLDYRLPGVVGVSSGAPSTAATWRCLLAAGLARLLEVYGATETGGIGLREA 250 (386)
T ss_pred -ChHHHHHhhccC--CEEEECcHHHHHHHhhCcCCCcceeEecCCCCCHHHHHHHHHhcccchhheeccccccccccccC
Confidence 466677777654 667778888766544322111100 0000000 2678999999865322111
Q ss_pred ceEEEEeeeccCcccccCCCce-EEecCceEEecCCCcccCCCcCCCCceeeecCc----CCcccceeEECCcccChHhH
Q psy14342 145 FALWVLSSVYSGHHSILIPPSE-VEVNPALWLSAVSQYRVRDTFCSCNGALYQGAE----RLALDETIMLRGMRYHPIDI 219 (316)
Q Consensus 145 ~~~~~~~~~~~g~~~~~~~g~~-~i~d~~l~v~~~~gY~~~~~~~~~d~g~~~~g~----~GR~dd~i~~~G~~v~p~eI 219 (316)
.+..+.++|+.+ .+ +.. ...|+..+ ...+|.|++++.+ .||.||+||++|+||+|.||
T Consensus 251 ----------~~~~~~~~p~~~~~~-~~~-~~~g~~~~-----~~tgD~g~~d~~G~l~i~GR~dd~Ik~~G~~V~p~eI 313 (386)
T TIGR02372 251 ----------PDDPFRLLPDLACFA-DTL-SSAGLARR-----LDLQDRLAWDKDGGFTILGRKDEILQVGGVNVSPGHV 313 (386)
T ss_pred ----------CCCCcccCCCccccC-CCc-cCCCccce-----eecCceEEEcCCCcEEEecccCCEEEECCEEEcHHHH
Confidence 111123567776 33 211 11122111 1235777775543 99999999999999999999
Q ss_pred HHHHHHhccccceeEEEeeCCcEEEEEEecCCchh---hcchHHHHHHHHHHhcCeeecEEEEEcCCCcccCCCchhh
Q psy14342 220 ENSVMRAHKKIAECAVFTWTNLLVVVVELDGNESE---ALDLVPLVTNAVLEEHHLIVGVAVVVDPGVVPINSRGEKQ 294 (316)
Q Consensus 220 E~~l~~~~p~v~~~~v~~~~~~~~~~v~~~~~~~~---~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~lP~t~~gKi~ 294 (316)
|++|.+ ||.|.+|+|...++++.+++++.+.... .+++.+++++++. .++.| ..+.+++ ++|+|++||++
T Consensus 314 E~~l~~-~p~V~~~~v~~~g~~~~a~vv~~~~~~~~~~~~~l~~~~~~~L~-~~~~P-~~i~~~~--~lP~t~~GKi~ 386 (386)
T TIGR02372 314 RDILER-NPRVRAAAVRLDGRRLKAFIVVAEDADEAELEIELRATAARHLP-APARP-DRFRFGT--ELPRTGAGKLA 386 (386)
T ss_pred HHHHHc-CCCceEEEEEcCCceEEEEEEECCCCChHHHHHHHHHHHHHhCC-CCCCC-cEEEEcc--cCCCCCCCCcC
Confidence 999999 9999999998777888777776643221 2345555555554 34444 4555554 99999999974
|
Ectothiorhodospira halophila. This enzyme is designated 6.2.1.12 and therefore joins a number of plant enzymes linked to lignin biosynthesis and given similar names. |
| >KOG1256|consensus | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.2e-32 Score=253.04 Aligned_cols=300 Identities=13% Similarity=0.035 Sum_probs=205.3
Q ss_pred CeEEEEeccCCCCCceEEEEeHHHHHHHHHHH---HHHhc---CCCCCceEEecCCcCChhhhHHHHhhhhcCceeeeeC
Q psy14342 1 MLAYLDFSVSTTGMLAGIKMSHAAVTSLCRSM---KLACE---LYPSRHIALCLDPYCGLGFALWVLSSVYSGHHSILIP 74 (316)
Q Consensus 1 ~~a~i~~TSGTTG~PK~V~~t~~~l~~~~~~~---~~~~~---~~~~d~~l~~~p~~h~~g~~~~~~~~l~~G~~~v~~~ 74 (316)
|.|.|.|||||||.||||++||+|+.+.+... ..... ....|+.++.+|++|++..+. -...+..|+.+-+..
T Consensus 256 d~atI~yTSGTTG~PKGVMLTH~Niv~~v~~~~~~~~~~~~~~~~~~dv~lSyLPLAHi~er~~-~~~~~~~G~~IgF~~ 334 (691)
T KOG1256|consen 256 DLATICYTSGTTGNPKGVMLTHRNIVSDVAGIFFLSAAENAKATVGDDVYLSYLPLAHIFERVV-ELYTFYIGAKIGFAR 334 (691)
T ss_pred ceEEEEEcCCCCCCCceEEEeccceeehhhhhhhhhhcccccccccCceEEEeCcHHHHHHHHH-HHhHhhcccEEEEec
Confidence 57899999999999999999999998865432 12111 223599999999999999998 455668899999975
Q ss_pred CcccccChHHHHHHHhccceeeEEecccchhhHHhhHH----hh--------------hh---hcccccc--cc------
Q psy14342 75 PSEVEVNPALWLSAVSQYRVRDTFCSYGMLAGIKMSHA----AV--------------TS---LCRSMKL--AC------ 125 (316)
Q Consensus 75 ~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~~~l~~~~~----~~--------------~~---~~~~~~l--s~------ 125 (316)
+ |+....+-+++.++|++..+|-.+..+..... +. +. ...+... +.
T Consensus 335 g-----D~~~l~~dlk~lkPT~f~~VPRVl~riye~I~~~~~~sgflkr~l~~~A~~~k~~~~~~~G~~~~~~~~~D~lV 409 (691)
T KOG1256|consen 335 G-----DILKLTDDLKELKPTVFPGVPRVLERIYEGIQKQVQKSGFLKRKLFNFAMAYKLEHRLMKGKSRSRDRFADKLV 409 (691)
T ss_pred C-----ChHHHHHHHHHhCCcEEeccHhHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHhhCCCCcccchHHHHHH
Confidence 3 56667777999999998888887763321111 00 00 0011111 00
Q ss_pred ------------------------------------cccccccchhccCCCCCCCceEEEEeeeccCcccccCCCce-EE
Q psy14342 126 ------------------------------------ELYPSRHIALCLDPYCGLGFALWVLSSVYSGHHSILIPPSE-VE 168 (316)
Q Consensus 126 ------------------------------------e~~~~yG~te~~~~~~~~~~~~~~~~~~~~g~~~~~~~g~~-~i 168 (316)
.++++||+||++.+.....+. . ...|..|.|+|+.+ ++
T Consensus 410 f~KI~~~LGg~vr~~~sGaAPls~ev~~F~r~~~g~~v~eGYGlTEts~g~~~~~~~----d-~~lgsvG~p~p~~~vKL 484 (691)
T KOG1256|consen 410 FHKIKQSLGGNVRLIISGAAPLSPEVLTFFRAALGCRVLEGYGLTETSAGTTLTLPG----D-NVLGSVGPPVPGNEVKL 484 (691)
T ss_pred HHHHHHHhcCceeEEEecCCCCCHHHHHHHHHhcCceeeecccccccCCceEeccCC----C-CCCCCcCCcccCceEEE
Confidence 188999999998665444431 1 13344445899999 88
Q ss_pred ecCc------------eEEecC---CCcccCCCcCCC-----------CceeeecCc----CCcccceeEE-CCcccChH
Q psy14342 169 VNPA------------LWLSAV---SQYRVRDTFCSC-----------NGALYQGAE----RLALDETIML-RGMRYHPI 217 (316)
Q Consensus 169 ~d~~------------l~v~~~---~gY~~~~~~~~~-----------d~g~~~~g~----~GR~dd~i~~-~G~~v~p~ 217 (316)
+|.. |++||+ +||+++|+.|++ |.|+++.++ .||.|++||. +|++|.|+
T Consensus 485 ~dvpe~ny~a~~~~GEIcirG~~Vf~GYyK~p~~T~e~ideDGWLhTGDiG~~~p~G~l~IidRkK~ifklaqGEyVaPe 564 (691)
T KOG1256|consen 485 VDVPEMNYDADGSKGEICVRGPNVFMGYYKDPEKTAEAIDEDGWLHTGDIGEWDPNGTLKIIDRKKNIFKLAQGEYVAPE 564 (691)
T ss_pred echHHhCcCcCCCcceEEEecchhceeccCChHHHhhhhccccccccccceeECCCccEEEEecccceEEcCCCCccChH
Confidence 5543 999999 999999998876 444444333 9999999997 89999999
Q ss_pred hHHHHHHHhccccceeEEEeeCC--cEEEEEEecCCchh----h-----------------cchHHHHHHHHHH----hc
Q psy14342 218 DIENSVMRAHKKIAECAVFTWTN--LLVVVVELDGNESE----A-----------------LDLVPLVTNAVLE----EH 270 (316)
Q Consensus 218 eIE~~l~~~~p~v~~~~v~~~~~--~~~~~v~~~~~~~~----~-----------------~~l~~~~~~~l~~----~~ 270 (316)
.||++..+ -+-|.+.+|.+... -+++++.+++.... . +.++.++.+...+ ..
T Consensus 565 ~IEniy~~-~~~V~qi~V~g~s~~~~LvaiVvpd~e~~~~~a~~~~~~~~~eelc~n~~~k~~vl~el~~~~~~~~l~~f 643 (691)
T KOG1256|consen 565 KIENIYKR-SLPVQQIFVLGDSLRSFLVAIVVPDPEVLKSWAAKDGVKGTFEELCRNLDVKEAVLSELVKVGKENGLKGF 643 (691)
T ss_pred HHHHHHhc-CCceEEEEEECCcchhcEEEEEecChhhchhhHHHccCchhHHHHhcChhhHHHHHHHHHHHHhhhhccCh
Confidence 99999999 89999999998865 47777777542110 0 1112222222211 11
Q ss_pred CeeecEEEEEcCC-Cc---ccCCCchhhHHHHHHHHHcCCCCcchhhc
Q psy14342 271 HLIVGVAVVVDPG-VV---PINSRGEKQRMHLRDGFLADQLDPIYVAY 314 (316)
Q Consensus 271 ~~~~~~~~~~~~~-~l---P~t~~gKi~r~~l~~~~~~~~~~~~~~~~ 314 (316)
.. ...+.+.+.. ++ -.||+-|++|..+.+.|.. +++.+|...
T Consensus 644 e~-vk~v~l~~~~FsienglltPTlK~KR~~l~~~yk~-~Id~mY~~~ 689 (691)
T KOG1256|consen 644 EQ-VKKVHLLPDPFSIENGLLTPTLKIKRPQLLKYYKK-QIDELYKEI 689 (691)
T ss_pred hh-EeeEEEecccccccCCccchhhhhhhHHHHHHHHH-HHHHHHhhc
Confidence 11 1234443211 23 3699999999999998886 899898654
|
|
| >PRK07868 acyl-CoA synthetase; Validated | Back alignment and domain information |
|---|
Probab=99.98 E-value=1.7e-31 Score=268.66 Aligned_cols=286 Identities=14% Similarity=0.056 Sum_probs=193.3
Q ss_pred CeEEEEeccCCCCCceEEEEeHHHHHHHHHHHHHHhcCCCCCceEEecCCcCChhhhHHHHhhhhcCceeeeeCCccccc
Q psy14342 1 MLAYLDFSVSTTGMLAGIKMSHAAVTSLCRSMKLACELYPSRHIALCLDPYCGLGFALWVLSSVYSGHHSILIPPSEVEV 80 (316)
Q Consensus 1 ~~a~i~~TSGTTG~PK~V~~t~~~l~~~~~~~~~~~~~~~~d~~l~~~p~~h~~g~~~~~~~~l~~G~~~v~~~~~~~~~ 80 (316)
|+++|+|| ||||.||++.++|.++..........+++.++|++++++|++|++|++..++.++..|+++++.+ . .
T Consensus 607 d~a~IiyT-gStgtpKpk~vt~~~~~~~~~~~~~~~~l~~~d~~L~~~Pl~h~~gl~~~l~~~l~gG~~vvl~~-~---~ 681 (994)
T PRK07868 607 DLAFIAFS-TAGGELVAKQITNYRWALSAFGTASAAALDRRDTVYCLTPLHHESGLLVSLGGAVVGGSRIALSR-G---L 681 (994)
T ss_pred ccEEEEEe-CCCCCcCcEEEehHHHHHHHHhhhhhcCCCCCCeEEEecChHHHhHHHHHHHHHhccceEEEecC-C---C
Confidence 57999999 57777777777887665555555667788899999999999999999875555666566555543 2 2
Q ss_pred ChHHHHHHHhccceeeEEecccchhhHHhhHHhhhhhcccccc--cc-----------------cccccccchhccCCCC
Q psy14342 81 NPALWLSAVSQYRVRDTFCSYGMLAGIKMSHAAVTSLCRSMKL--AC-----------------ELYPSRHIALCLDPYC 141 (316)
Q Consensus 81 ~~~~~~~~~~~~~~t~~~~~~~~~~~l~~~~~~~~~~~~~~~l--s~-----------------e~~~~yG~te~~~~~~ 141 (316)
+|..+++.++++++|+++.+|+++..+.............+++ ++ .+++.||+||++....
T Consensus 682 ~~~~~~~~I~~~~vT~~~~~Ps~l~~L~~~~~~~~~~~~slr~~~g~gl~~~l~~~~~~~~~~~~l~~~YG~TE~~~~~~ 761 (994)
T PRK07868 682 DPDRFVQEVRQYGVTVVSYTWAMLREVVDDPAFVLHGNHPVRLFIGSGMPTGLWERVVEAFAPAHVVEFFATTDGQAVLA 761 (994)
T ss_pred CHHHHHHHHHHhCCcEEEeHHHHHHHHHhCcCCccCCCCceEEEecCCCCHHHHHHHHHHhCchheeeeeeccccccccc
Confidence 7899999999999999999999887665432210000001110 11 2788999999753221
Q ss_pred CCCceEEEEeeeccCcccccCCCc-e-EEe-----------cCc-------------eEEecC----------CCcccC-
Q psy14342 142 GLGFALWVLSSVYSGHHSILIPPS-E-VEV-----------NPA-------------LWLSAV----------SQYRVR- 184 (316)
Q Consensus 142 ~~~~~~~~~~~~~~g~~~~~~~g~-~-~i~-----------d~~-------------l~v~~~----------~gY~~~- 184 (316)
..+ ....++.|.|+||+ + ++. |++ |+++++ .+|+++
T Consensus 762 -~~~------~~~~~svG~p~pg~~~v~i~~~d~~~g~li~d~~G~~~~~~~ge~Gel~~~~~~~~~p~~t~~~~~~~~~ 834 (994)
T PRK07868 762 -NVS------GAKIGSKGRPLPGAGRVELAAYDPEHDLILEDDRGFVRRAEVNEVGVLLARARGPIDPTASVKRGVFAPA 834 (994)
T ss_pred -ccC------CCCCcccCCccCCCCceeEEEecCcCCceeecCCceEEEcCCCCceEEEEecCCCCChhhhhHhcccccC
Confidence 110 11223455678887 3 332 111 555554 122221
Q ss_pred -CCcCCCCceeeec-Cc---CCcccceeEECCcccChHhHHHHHHHhccccceeEEEeeC----CcEEEEEEecCCc-hh
Q psy14342 185 -DTFCSCNGALYQG-AE---RLALDETIMLRGMRYHPIDIENSVMRAHKKIAECAVFTWT----NLLVVVVELDGNE-SE 254 (316)
Q Consensus 185 -~~~~~~d~g~~~~-g~---~GR~dd~i~~~G~~v~p~eIE~~l~~~~p~v~~~~v~~~~----~~~~~~v~~~~~~-~~ 254 (316)
-.--++|.|++++ |. +||.||+||++|++|+|.|||++|.+ ||.|.+|+|+++. +.+++++++.+.. .+
T Consensus 835 dgw~~TGDlg~~d~dG~l~~~GR~dd~Ik~~G~~I~p~EIE~~L~~-hp~V~~aaVvg~~d~~~~~~~a~Vv~~~~~~~~ 913 (994)
T PRK07868 835 DTWISTEYLFRRDDDGDYWLVDRRGSVIRTARGPVYTEPVTDALGR-IGGVDLAVTYGVEVGGRQLAVAAVTLRPGAAIT 913 (994)
T ss_pred CEEEeccceEEEcCCCCEEEeccCCCEEEeCCceEcHHHHHHHHhc-CCCeeEEEEEeecCCCCceEEEEEEeCCCCcCC
Confidence 0112336666654 43 99999999999999999999999999 9999999999984 3567777665543 23
Q ss_pred hcchHHHHHHHHHHhcCeeecEEEEEcCCCcccCCCchhhHHHHHHHHHc
Q psy14342 255 ALDLVPLVTNAVLEEHHLIVGVAVVVDPGVVPINSRGEKQRMHLRDGFLA 304 (316)
Q Consensus 255 ~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~lP~t~~gKi~r~~l~~~~~~ 304 (316)
.+++.+.+++ +. .+..| ..+.+++ .||+|++||++|++|+++-..
T Consensus 914 ~~~L~~~l~~-l~-~y~vP-~~i~~v~--~lP~T~sGKi~r~~L~~~~lp 958 (994)
T PRK07868 914 AADLTEALAS-LP-VGLGP-DIVHVVP--EIPLSATYRPTVSALRAAGIP 958 (994)
T ss_pred HHHHHHHHHh-CC-CCcCC-eEEEEeC--CCCCCccccEehHHHHhcCCC
Confidence 4567777764 43 45544 4666666 899999999999999877443
|
|
| >KOG1180|consensus | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.2e-31 Score=238.96 Aligned_cols=304 Identities=12% Similarity=0.105 Sum_probs=209.6
Q ss_pred CeEEEEeccCCCCCceEEEEeHHHHHHHHHHHHHHh-cCCCCCceEEecCCcCChhhhHHHHhhhhcCceeeeeCCcccc
Q psy14342 1 MLAYLDFSVSTTGMLAGIKMSHAAVTSLCRSMKLAC-ELYPSRHIALCLDPYCGLGFALWVLSSVYSGHHSILIPPSEVE 79 (316)
Q Consensus 1 ~~a~i~~TSGTTG~PK~V~~t~~~l~~~~~~~~~~~-~~~~~d~~l~~~p~~h~~g~~~~~~~~l~~G~~~v~~~~~~~~ 79 (316)
|+|+|+|||||||.||||+++|.|+++.+.+..... .+.+.|+.+..+|+.|++.+.+ =+..+..|+.+-..+|..+.
T Consensus 238 Dia~IMYTSGSTG~PKGVml~H~NiVA~~~G~~~~v~~lg~~D~yi~yLPLAHIlEl~a-E~~~ft~G~~iGY~S~~TLt 316 (678)
T KOG1180|consen 238 DIACIMYTSGSTGLPKGVMLTHSNIVAGVTGVGENVPELGPKDRYIAYLPLAHILELTA-ELVCFTWGGRIGYSSPLTLT 316 (678)
T ss_pred ceEEEEEcCCCCCCCceEEEecccHHhhhhhhcccCcccCCCceEEEechHHHHHHHHH-HHHHHhhCCEeecCCcceec
Confidence 789999999999999999999999999888777665 5778999999999999999988 46788888888776665443
Q ss_pred cChHHH----HHHHhccceeeEEecccchhhHHhhH-Hhhh-------------h-----hcc-----------------
Q psy14342 80 VNPALW----LSAVSQYRVRDTFCSYGMLAGIKMSH-AAVT-------------S-----LCR----------------- 119 (316)
Q Consensus 80 ~~~~~~----~~~~~~~~~t~~~~~~~~~~~l~~~~-~~~~-------------~-----~~~----------------- 119 (316)
...... ---+..+++|++.++|.++....... .+.. . ..+
T Consensus 317 dts~ki~kg~kGD~~~lkPTiM~~VpAV~drVrKgVl~kV~~~~~~~k~lF~~aY~~K~~~~~~~g~~s~~ld~lVFkKI 396 (678)
T KOG1180|consen 317 DTSSKIKKGCKGDLTELKPTIMAAVPAVMDRVRKGVLSKVNAMPGLQKKLFWTAYERKLSLIERNGPGSPLLDALVFKKI 396 (678)
T ss_pred ccchhhccCCcCccccccchhhhhhHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHHhccCCchhhHHHHHHHHH
Confidence 322111 12345677777766666654221100 0000 0 000
Q ss_pred --------cccccc------c------------ccccccchhccCCCCCCCceEEEEeeeccCcccccCCCce-EEecCc
Q psy14342 120 --------SMKLAC------E------------LYPSRHIALCLDPYCGLGFALWVLSSVYSGHHSILIPPSE-VEVNPA 172 (316)
Q Consensus 120 --------~~~ls~------e------------~~~~yG~te~~~~~~~~~~~~~~~~~~~~g~~~~~~~g~~-~i~d~~ 172 (316)
+..|++ | +.++||.||+|.+.+..+|.. -+.|..|-|++=.+ +++|-+
T Consensus 397 r~~lGG~lR~~LsGGapLS~dtQrF~nic~C~Pv~qGYGLTEtca~~tv~e~~d-----~~~g~vG~pl~c~eiKLvdw~ 471 (678)
T KOG1180|consen 397 RALLGGNLRYILSGGAPLSPDTQRFMNICFCCPVLQGYGLTETCAAATVLEPED-----FSTGRVGAPLPCCEIKLVDWE 471 (678)
T ss_pred HHHhCCceEEEEeCCCCCCHHHHHHHHHhccccccccccccchhcccEecChhh-----cccccccCCccceEEEEEEhh
Confidence 001111 1 678999999998887777632 22232333677777 666532
Q ss_pred --------------eEEecC---CCcccCCCcCCC--------------CceeeecCc----CCcccceeEE-CCcccCh
Q psy14342 173 --------------LWLSAV---SQYRVRDTFCSC--------------NGALYQGAE----RLALDETIML-RGMRYHP 216 (316)
Q Consensus 173 --------------l~v~~~---~gY~~~~~~~~~--------------d~g~~~~g~----~GR~dd~i~~-~G~~v~p 216 (316)
||++|+ .||++|++.++. |.|.+++++ .+|.+|++|. +|+.|++
T Consensus 472 EgGY~~~~~PPrGEI~i~G~~vt~gY~kn~ekT~e~ft~~~G~~WF~TGDIGe~~pdG~LkIIDRKKdLVKlq~GEYIsL 551 (678)
T KOG1180|consen 472 EGGYFAKNKPPRGEILIGGPNVTMGYYKNEEKTKEDFTVEDGQRWFRTGDIGEFHPDGCLKIIDRKKDLVKLQNGEYISL 551 (678)
T ss_pred hcCccCCCCCCCceEEecCCccChhhhCChhhhhhhceecCCcEEEeccccceecCCCcEEEeechhhhhhhcccceeeh
Confidence 999999 999999988765 334443322 8999999997 9999999
Q ss_pred HhHHHHHHHhccccceeEEEeeCC--cEEEEEEecCCchh------------h------cchHHHHHHHHHH--------
Q psy14342 217 IDIENSVMRAHKKIAECAVFTWTN--LLVVVVELDGNESE------------A------LDLVPLVTNAVLE-------- 268 (316)
Q Consensus 217 ~eIE~~l~~~~p~v~~~~v~~~~~--~~~~~v~~~~~~~~------------~------~~l~~~~~~~l~~-------- 268 (316)
+-+|+++.. .|.|...+|.+... .++++|++++.... . .++.+++...+.+
T Consensus 552 ~KvEa~l~s-~p~V~NICvyAd~~~s~~VaiVVPn~~~lt~lA~k~Gi~~~~~e~lc~d~k~~~~v~k~L~~~ak~~~L~ 630 (678)
T KOG1180|consen 552 GKVEAALRS-SPYVDNICVYADSNKSKPVAIVVPNQKHLTKLAEKAGISGSTWEELCEDKKVVKAVLKELIEAAKSQKLE 630 (678)
T ss_pred HHHHHHHhc-CcchhheEEecccccceeEEEEcCCchHHHHHHHHcCCChhhHHHHhccHHHHHHHHHHHHHHHHhcccc
Confidence 999999999 99999999999865 57777777753211 0 1223333333221
Q ss_pred hcCeeecEEEEEcCCCcc----cCCCchhhHHHHHHHHHcCCCCcchhh
Q psy14342 269 EHHLIVGVAVVVDPGVVP----INSRGEKQRMHLRDGFLADQLDPIYVA 313 (316)
Q Consensus 269 ~~~~~~~~~~~~~~~~lP----~t~~gKi~r~~l~~~~~~~~~~~~~~~ 313 (316)
...++ ..+++.+...-| .|+.-|++|+.++..|.+ +++.+|..
T Consensus 631 ~iEip-~~I~l~~e~WTPenGlvT~A~KLKRk~I~~~~k~-ei~~~Y~~ 677 (678)
T KOG1180|consen 631 RIEIP-AKIVLSPEPWTPENGLVTAALKLKRKEILAAYKK-EIDRLYKE 677 (678)
T ss_pred ccccc-ceeEecCCCcCCCccccHHHHHhhHHHHHHHHHH-HHHHHhcc
Confidence 23444 356666655556 467899999999999997 88888854
|
|
| >TIGR01733 AA-adenyl-dom amino acid adenylation domain | Back alignment and domain information |
|---|
Probab=99.96 E-value=2.1e-28 Score=224.58 Aligned_cols=231 Identities=16% Similarity=0.142 Sum_probs=173.3
Q ss_pred CeEEEEeccCCCCCceEEEEeHHHHHHHHHHHHHHhcCCCCCceEEecCCcCChhhhHHHHhhhhcCceeeeeCCccccc
Q psy14342 1 MLAYLDFSVSTTGMLAGIKMSHAAVTSLCRSMKLACELYPSRHIALCLDPYCGLGFALWVLSSVYSGHHSILIPPSEVEV 80 (316)
Q Consensus 1 ~~a~i~~TSGTTG~PK~V~~t~~~l~~~~~~~~~~~~~~~~d~~l~~~p~~h~~g~~~~~~~~l~~G~~~v~~~~~~~~~ 80 (316)
++++++|||||||.||+|.+||+++..++..+...+++.++|+++...|++|.+++.. ++.++..|+++++.++....
T Consensus 121 ~~~~i~~TSGTtG~pK~v~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~-~~~~l~~g~~~~~~~~~~~~- 198 (408)
T TIGR01733 121 DLAYVIYTSGSTGRPKGVVVTHRSLVNLLAWLARRYGLDPDDRVLQFASLSFDASVEE-IFGTLLAGATLVVPPEDEER- 198 (408)
T ss_pred CcEEEEEcCCCCCCCCEEEeccHHHHHHHHHHHHhcCCCCCceEEEecCCccchhHHH-HHHHHhCCCEEEEcChhhcc-
Confidence 5789999999999999999999999999888888999999999999999999988775 89999999999988765432
Q ss_pred ChHHHHHHHhccceeeEEecccchhhHHhhHHhhhhhcccccccc------------------cccccccchhccCCCCC
Q psy14342 81 NPALWLSAVSQYRVRDTFCSYGMLAGIKMSHAAVTSLCRSMKLAC------------------ELYPSRHIALCLDPYCG 142 (316)
Q Consensus 81 ~~~~~~~~~~~~~~t~~~~~~~~~~~l~~~~~~~~~~~~~~~ls~------------------e~~~~yG~te~~~~~~~ 142 (316)
.+..|.+.+++++++.+.++|..+..+...........+.+-..+ ++.+.||+||++.....
T Consensus 199 ~~~~~~~~~~~~~~t~l~~~p~~~~~l~~~~~~~~~~l~~v~~~g~~~~~~~~~~~~~~~~~~~i~~~YG~tE~g~~~~~ 278 (408)
T TIGR01733 199 DAALLAALIAEHPVTVLNLTPSLLALLAAALPPALASLRLVILGGEALTPALVDRWRARGPGARLINLYGPTETTVWSTA 278 (408)
T ss_pred CHHHHHHHHHHcCceEEEeCHHHHHHHHHhhhhcccCceEEEEeCccCCHHHHHHHHHhCCCcEEEecccCCceEEEEEE
Confidence 578999999999999999999988766554331111111111111 37889999998643321
Q ss_pred CC-ceEEEEeeeccCcccccCCCce-EEecCc-----------eEEecC---CCcccCCCcCC-----------------
Q psy14342 143 LG-FALWVLSSVYSGHHSILIPPSE-VEVNPA-----------LWLSAV---SQYRVRDTFCS----------------- 189 (316)
Q Consensus 143 ~~-~~~~~~~~~~~g~~~~~~~g~~-~i~d~~-----------l~v~~~---~gY~~~~~~~~----------------- 189 (316)
.. ........ ..++.|.+++|++ +++|++ |+++++ .||+++++.+.
T Consensus 279 ~~~~~~~~~~~-~~~~~G~~~~~~~~~i~~~~~~~~~~g~~Gel~v~~~~~~~gy~~~~~~~~~~~~~~~~~~~~~~~~~ 357 (408)
T TIGR01733 279 TLVDADDAPRE-SPVPIGRPLANTRLYVLDDDLRPVPVGVVGELYIGGPGVARGYLNRPELTAERFVPDPFAGGDGARLY 357 (408)
T ss_pred EEcCccccCCc-cccccCcccCCceEEEECCCCCCCCCCCceEEEecCccccccccCChhhhhcceeeCCCCCCCCceEE
Confidence 10 00000000 1223445799999 888763 999999 89998765432
Q ss_pred --CCceeeec-Cc---CCcccceeEECCcccChHhHHHHHHHhccccceeEE
Q psy14342 190 --CNGALYQG-AE---RLALDETIMLRGMRYHPIDIENSVMRAHKKIAECAV 235 (316)
Q Consensus 190 --~d~g~~~~-g~---~GR~dd~i~~~G~~v~p~eIE~~l~~~~p~v~~~~v 235 (316)
+|.|++++ |. .||.||+|+.+|++|+|.|||++|.+ ||.|.+|+|
T Consensus 358 ~TGDl~~~d~~g~~~~~gR~~~~i~~~G~~v~~~~ie~~l~~-~~~v~~~~v 408 (408)
T TIGR01733 358 RTGDLVRYLPDGNLEFLGRIDDQVKIRGYRIELGEIEAALLR-HPGVREAVV 408 (408)
T ss_pred ECCceEEEcCCCCEEEeeccCCEEEeCeEEechHHHHHHHhc-CcchhhhcC
Confidence 24555543 33 99999999999999999999999998 999998875
|
This domain is a subset of the AMP-binding domain found in Pfam (pfam00501) which also hits substrate--CoA ligases and luciferases. Sequences scoring in between trusted and noise for this model may be ambiguous as to whether they activate amino acids or other molecules lacking an alpha amino group. |
| >KOG1179|consensus | Back alignment and domain information |
|---|
Probab=99.95 E-value=2.6e-28 Score=218.44 Aligned_cols=292 Identities=10% Similarity=0.037 Sum_probs=205.8
Q ss_pred CeEEEEeccCCCCCceEEEEeHHHHHHHHHHHHHHhcCCCCCceEEecCCcCChhhhHHHHhhhhcCceeeeeCCccccc
Q psy14342 1 MLAYLDFSVSTTGMLAGIKMSHAAVTSLCRSMKLACELYPSRHIALCLDPYCGLGFALWVLSSVYSGHHSILIPPSEVEV 80 (316)
Q Consensus 1 ~~a~i~~TSGTTG~PK~V~~t~~~l~~~~~~~~~~~~~~~~d~~l~~~p~~h~~g~~~~~~~~l~~G~~~v~~~~~~~~~ 80 (316)
++++.||||||||.||+.+++|.....-+..+...++.+++|+++.++|++|..|.+.++-+.+..|+|+|+-...
T Consensus 243 s~~lyIYTSGTTGLPKaAvith~r~~~~a~g~~~~~g~~~~DvvY~~lPLYHsaa~ilGi~~~l~~GaT~VlrkKF---- 318 (649)
T KOG1179|consen 243 SPLLYIYTSGTTGLPKAAVITHLRYLQGAAGFYYVFGMTADDVVYTTLPLYHSAAGILGIGGCLLHGATVVLRKKF---- 318 (649)
T ss_pred ceeEEEEcCCCCCCCHHHHHHHHHHHHHHHHHHHHhCCCccceEEEcchhHHHHHHHHHHHHHHhcCceEEEeccc----
Confidence 5789999999999999999999987777777788899999999999999999999999999999999999997654
Q ss_pred ChHHHHHHHhccceeeEEecccchhhHHhhHHhhhhhcccccccc------c-------------ccccccchhccCCCC
Q psy14342 81 NPALWLSAVSQYRVRDTFCSYGMLAGIKMSHAAVTSLCRSMKLAC------E-------------LYPSRHIALCLDPYC 141 (316)
Q Consensus 81 ~~~~~~~~~~~~~~t~~~~~~~~~~~l~~~~~~~~~~~~~~~ls~------e-------------~~~~yG~te~~~~~~ 141 (316)
++..||+-+.+|++|++.-....++.+...+....+..+++++.- + +.+.||.||......
T Consensus 319 SAS~FW~DC~k~~~Tv~QYIGElcRYLl~~p~~~~er~HkVRla~GNGLR~diW~~Fv~RFg~~~IgE~YgaTEgn~~~~ 398 (649)
T KOG1179|consen 319 SASNFWDDCRKYNVTVIQYIGELCRYLLNQPPSPEERQHKVRLAYGNGLRPDIWQQFVKRFGIIKIGEFYGATEGNSNLV 398 (649)
T ss_pred chhhhHHHHHHhCCeeeehHHHHHHHHHcCCCChhhcCceEEEEecCCCCchHHHHHHHHcCCCeEEEEeccccCcceee
Confidence 567899999999999999899999888776655443345555433 1 788899998753211
Q ss_pred ---------CCCce----EEEEeeeccCc-ccccCCCce---EEecCc--------eEEecC----CCcccCCCcCCC--
Q psy14342 142 ---------GLGFA----LWVLSSVYSGH-HSILIPPSE---VEVNPA--------LWLSAV----SQYRVRDTFCSC-- 190 (316)
Q Consensus 142 ---------~~~~~----~~~~~~~~~g~-~~~~~~g~~---~i~d~~--------l~v~~~----~gY~~~~~~~~~-- 190 (316)
+..+. ++..+.+..++ .+-|+.+.+ .-+.+. +.-+.| .||.++.+++.+
T Consensus 399 N~d~~vGA~G~~~~~~~~l~p~~LIk~D~~t~E~iRd~~G~Ci~~~~GEpGlLv~~i~~k~P~~~F~GY~g~~~~t~kKl 478 (649)
T KOG1179|consen 399 NYDGRVGACGFMSRLLKLLYPFRLIKVDPETGEPIRDSQGLCIPCPPGEPGLLVGKIVQKNPLRSFLGYAGPKKATEKKL 478 (649)
T ss_pred eecCccccccchhhhhhhccceEEEEecCCCCceeecCCceEEECCCCCCceEEEEeccCCchhhhccccCchhhhhhhh
Confidence 00000 00011111110 000111111 111111 223344 799997777655
Q ss_pred --------C----ceee---ec-Cc---CCcccceeEECCcccChHhHHHHHHHhccccceeEEEeeC-----C--cEEE
Q psy14342 191 --------N----GALY---QG-AE---RLALDETIMLRGMRYHPIDIENSVMRAHKKIAECAVFTWT-----N--LLVV 244 (316)
Q Consensus 191 --------d----~g~~---~~-g~---~GR~dd~i~~~G~~v~p~eIE~~l~~~~p~v~~~~v~~~~-----~--~~~~ 244 (316)
| +|++ |+ |. .+|..|.++..||||+..|||+.|.. ...++|+.|.|+. + .+++
T Consensus 479 ~rDVFkkGD~~f~tGDlLv~D~~GylYF~DRtGDTFRWKGENVsTtEVe~~l~~-~~~~~dv~VYGV~VP~~EGRaGMAa 557 (649)
T KOG1179|consen 479 LRDVFKKGDVYFNTGDLLVADELGYLYFKDRTGDTFRWKGENVSTTEVEDVLSA-LDFLQDVNVYGVTVPGYEGRAGMAA 557 (649)
T ss_pred HHhhhccCcEEEeeCcEEEEecCCcEEEeccCCCceeecCCcccHHHHHHHHhh-hccccceeEEEEecCCccCccceEE
Confidence 2 3433 22 32 89999999999999999999999999 9999999999992 2 3555
Q ss_pred EEEecCCchhhcchHHHHHHHHHHhcCeeecEEEEEcCCCcccCCCchhhHHHHHHH
Q psy14342 245 VVELDGNESEALDLVPLVTNAVLEEHHLIVGVAVVVDPGVVPINSRGEKQRMHLRDG 301 (316)
Q Consensus 245 ~v~~~~~~~~~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~lP~t~~gKi~r~~l~~~ 301 (316)
++.......+.+.+-+.++..|+ .|..| ..+++.+ ++++|.+=|..+..|.+.
T Consensus 558 I~~~p~~~~d~~~l~~~l~~~LP-~YA~P-~FlRl~~--~i~~TgTFKl~K~~L~~e 610 (649)
T KOG1179|consen 558 IVLDPTTEKDLEKLYQHLRENLP-SYARP-RFLRLQD--EIEKTGTFKLQKTELQKE 610 (649)
T ss_pred EEecCcccchHHHHHHHHHhhCc-cccch-HHHHHHh--hhhcccchhhHHHHHHHc
Confidence 55222233445566666666666 45444 3445544 899999999999998876
|
|
| >PTZ00297 pantothenate kinase; Provisional | Back alignment and domain information |
|---|
Probab=99.95 E-value=1.4e-27 Score=242.41 Aligned_cols=293 Identities=9% Similarity=0.022 Sum_probs=194.9
Q ss_pred CeEEEEe---ccCCCCCceEEEEeHHHHHHHHHHHHHHh---cCCCCCceEEecCCcCChhhhHHHHhhhhcCceeeeeC
Q psy14342 1 MLAYLDF---SVSTTGMLAGIKMSHAAVTSLCRSMKLAC---ELYPSRHIALCLDPYCGLGFALWVLSSVYSGHHSILIP 74 (316)
Q Consensus 1 ~~a~i~~---TSGTTG~PK~V~~t~~~l~~~~~~~~~~~---~~~~~d~~l~~~p~~h~~g~~~~~~~~l~~G~~~v~~~ 74 (316)
|++.|+| ||||||.||||++||+|++.++.++.... ...++|+.++++|++|+++.+. .+.+++.|+++.+.
T Consensus 599 DlatIiYtSyTSGTTG~PKGVmLTH~Nlla~~~~~~~~~~~~~~~~~D~~Ls~LPLaHI~er~~-~~~~l~~G~~I~~~- 676 (1452)
T PTZ00297 599 TVFTYVVDNTTSASGDGLAVVRVTHADVLRDISTLVMTGVLPSSFKKHLMVHFTPFAMLFNRVF-VLGLFAHGSAVATV- 676 (1452)
T ss_pred cEEEEEecCCCCCCCcCCcEEEEeHHHHHHHHHHHhhhccccCCCCCCEEEEechHHHHHHHHH-HHHHHHcCCEEEeC-
Confidence 5778885 99999999999999999999888765532 3457899999999999999765 67889999988642
Q ss_pred CcccccChHHHHHHHhccceeeEEecccchhhHHhhHHh-hhh---h------------c-----c--------------
Q psy14342 75 PSEVEVNPALWLSAVSQYRVRDTFCSYGMLAGIKMSHAA-VTS---L------------C-----R-------------- 119 (316)
Q Consensus 75 ~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~~~l~~~~~~-~~~---~------------~-----~-------------- 119 (316)
++..+++.++++++|+++.+|.++..+...... ... . . .
T Consensus 677 ------d~~~lledL~~~rPTv~~~VPrv~ekI~~~i~~~~~~~~~~~~~lf~~A~~~k~~~~~~g~~~~~l~d~LVf~k 750 (1452)
T PTZ00297 677 ------DAAHLQRAFVKFQPTILVAAPSLFSTSRLQLSRANERYSAVYSWLFERAFQLRSRLINIHRRDSSLLRFIFFRA 750 (1452)
T ss_pred ------CHHHHHHHHHHHCCEEEEecHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHhcCCCCcHHHHHHHHHH
Confidence 477889999999999999999988744322111 000 0 0 0
Q ss_pred -------cc--cccc--------------cccccccchhccCCCCCCCceEEEEeeeccCcccccCCCce-EEecC-ceE
Q psy14342 120 -------SM--KLAC--------------ELYPSRHIALCLDPYCGLGFALWVLSSVYSGHHSILIPPSE-VEVNP-ALW 174 (316)
Q Consensus 120 -------~~--~ls~--------------e~~~~yG~te~~~~~~~~~~~~~~~~~~~~g~~~~~~~g~~-~i~d~-~l~ 174 (316)
.+ -+++ .+..+||+||.+. .+.+. ... ..|.|+||++ ++.+. ++-
T Consensus 751 ir~~lGGrlr~~isGga~~~l~~~l~~~i~i~~g~glTE~~~---~~~~~-----~~~--~~G~PlpgvEvKI~~~~E~~ 820 (1452)
T PTZ00297 751 TQELLGGCVEKIVLCVSEESTSFSLLEHISVCYVPCLREVFF---LPSEG-----VFC--VDGTPAPSLQVDLEPFDEPS 820 (1452)
T ss_pred HHHHhcCCeEEEEECCCccccChHHhCCceEEEecceEEeee---ecCCC-----Ccc--cCCeecCceEEEEccccccc
Confidence 00 0000 0233556666321 11110 000 1255899999 88752 210
Q ss_pred ---EecC--CCcccCCCcCCCC-ceeeecCc---CCcccceeEE-CCcccChHhHHHHHHHhccccceeEEEeeCC-cEE
Q psy14342 175 ---LSAV--SQYRVRDTFCSCN-GALYQGAE---RLALDETIML-RGMRYHPIDIENSVMRAHKKIAECAVFTWTN-LLV 243 (316)
Q Consensus 175 ---v~~~--~gY~~~~~~~~~d-~g~~~~g~---~GR~dd~i~~-~G~~v~p~eIE~~l~~~~p~v~~~~v~~~~~-~~~ 243 (316)
-+|. .+|++++++|..- .||+.+|. +||.||+||. +|++|+|+.||+.+.. +|.|.+++|+|.+. .++
T Consensus 821 ~~~~~GEIlvr~~kdpe~T~e~~~gW~~dG~L~IidRkKdlikls~GEyVaP~~IE~~l~~-sp~I~qi~V~Gd~~k~lv 899 (1452)
T PTZ00297 821 DGAGIGQLVLAKKGEPRRTLPIAAQWKRDRTLRLLGPPLGILLPVAYEYVIAAELERIFSQ-SRYVNDIFLYADPSRPII 899 (1452)
T ss_pred CCCCCCeEEEEECCChHHHHHhhCcCccCCeEEEEeccccceECCCCcEEcHHHHHHHHhc-CCCccEEEEEecCCCceE
Confidence 0122 3577888877663 47777776 9999999996 9999999999999999 99999999999854 467
Q ss_pred EEEEecCCchh--------------------hcchHH----HHHHH---HHHhcCe----eecEEEEEcCCCc-----cc
Q psy14342 244 VVVELDGNESE--------------------ALDLVP----LVTNA---VLEEHHL----IVGVAVVVDPGVV-----PI 287 (316)
Q Consensus 244 ~~v~~~~~~~~--------------------~~~l~~----~~~~~---l~~~~~~----~~~~~~~~~~~~l-----P~ 287 (316)
+++.+.+.... ..++.+ .+++. +.+..+. .+..+.+++ +.+ -+
T Consensus 900 ALVvpd~e~l~~~wa~~~gi~~~~~~~~~~~~~el~~~~~~~v~~~i~~V~~~n~l~~~ei~k~~~Ll~-~~Ft~enGlL 978 (1452)
T PTZ00297 900 AIVSPNRDTVEFEWRQSHCMGEGGGPARQLGWTELVAYASSLLTADFACIAKENGLHPSNVPEYVHLHP-HAFKDHSTFL 978 (1452)
T ss_pred EEEEeCHHHHHHHHHHHcCCCccccccccCCHHHHHHhHHHHHHHHHHHHHHHhCcCccceeeEEEEeC-CCCCCCCCcC
Confidence 77766542111 112222 12222 2211111 112233433 222 47
Q ss_pred CCCchhhHHHHHHHHHcCCCCcchhhc
Q psy14342 288 NSRGEKQRMHLRDGFLADQLDPIYVAY 314 (316)
Q Consensus 288 t~~gKi~r~~l~~~~~~~~~~~~~~~~ 314 (316)
|++.|++|+.+.+.|.+ .++.+|...
T Consensus 979 TPTlKlKR~~I~~kY~~-~Ie~LY~~~ 1004 (1452)
T PTZ00297 979 TPYGKIRRDAVHSYFSS-VIERFYSDV 1004 (1452)
T ss_pred ChhhhhhHHHHHHHHHH-HHHHHhccc
Confidence 99999999999999997 888888653
|
|
| >TIGR02155 PA_CoA_ligase phenylacetate-CoA ligase | Back alignment and domain information |
|---|
Probab=99.95 E-value=5.9e-26 Score=209.60 Aligned_cols=280 Identities=12% Similarity=0.104 Sum_probs=179.2
Q ss_pred eEEEEeccCCCCCceEEEEeHHHHHHHHHHH---HHHhcCCCCCceEEecCCcCChhhhHHHHhhhhcCceeeeeCCccc
Q psy14342 2 LAYLDFSVSTTGMLAGIKMSHAAVTSLCRSM---KLACELYPSRHIALCLDPYCGLGFALWVLSSVYSGHHSILIPPSEV 78 (316)
Q Consensus 2 ~a~i~~TSGTTG~PK~V~~t~~~l~~~~~~~---~~~~~~~~~d~~l~~~p~~h~~g~~~~~~~~l~~G~~~v~~~~~~~ 78 (316)
+++++|||||||.||+|.++|.++....... ...++++++|+++...+..+..+.+...+.++..|++++..++.
T Consensus 77 ~~~~~~TSGTTG~Pk~v~~t~~~~~~~~~~~~~~~~~~g~~~~d~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~-- 154 (422)
T TIGR02155 77 VVRIHASSGTTGKPTVVGYTQNDIDTWSSVVARSIRAAGGRPGDLIHNAYGYGLFTGGLGAHYGAEKLGCTVVPISGG-- 154 (422)
T ss_pred cEEEEECCCCCCCCeEeccCHHHHHHHHHHHHHHHHHcCCCCCcEEEEccCccccchhHHHHHHHHHcCcEEEecCCC--
Confidence 5788899999999999999999886654332 33468889998887766554444443356788889998876543
Q ss_pred ccChHHHHHHHhccceeeEEecccchhhHHhhHHhh--h---hhcccccccc-----------------cccccccchhc
Q psy14342 79 EVNPALWLSAVSQYRVRDTFCSYGMLAGIKMSHAAV--T---SLCRSMKLAC-----------------ELYPSRHIALC 136 (316)
Q Consensus 79 ~~~~~~~~~~~~~~~~t~~~~~~~~~~~l~~~~~~~--~---~~~~~~~ls~-----------------e~~~~yG~te~ 136 (316)
++..+++.++++++++++..|+++..+....... . ...+.+-.++ .+++.||+||+
T Consensus 155 --~~~~~~~~i~~~~~t~l~~~Ps~l~~L~~~~~~~~~~~~~~~lr~i~~~ge~l~~~~~~~i~~~~g~~v~~~YG~tE~ 232 (422)
T TIGR02155 155 --QTEKQVQLIQDFKPDIIMVTPSYMLNLLEELKRMGIDPAQTSLQVGIFGAEPWTNAMRKEIEARLGMKATDIYGLSEV 232 (422)
T ss_pred --CHHHHHHHHHHHCCCEEEEcHHHHHHHHHHHHHcCCCcccCceEEEEEeCCcCCHHHHHHHHHHhCCceEecccchhh
Confidence 4678999999999999999999887665433221 0 0111112222 27889999998
Q ss_pred cC-CCCCCCceEEEEeeeccCcccccCCCce-EEecCc------------eEEecC--CCcccCCCcCCCCceeeec--C
Q psy14342 137 LD-PYCGLGFALWVLSSVYSGHHSILIPPSE-VEVNPA------------LWLSAV--SQYRVRDTFCSCNGALYQG--A 198 (316)
Q Consensus 137 ~~-~~~~~~~~~~~~~~~~~g~~~~~~~g~~-~i~d~~------------l~v~~~--~gY~~~~~~~~~d~g~~~~--g 198 (316)
+. ..+..+. ....|.+ ...++.. .++|++ |++.+. ..+- .-.--++|.|.+++ |
T Consensus 233 ~~~~~~~~~~------~~~~g~~-~~~~~~~~eivd~~~g~~v~~Ge~Gelvvt~~~~~~~p-~~ry~TGDl~~~~~~~G 304 (422)
T TIGR02155 233 IGPGVAMECV------ETQDGLH-IWEDHFYPEIIDPHTGEVLPDGEEGELVFTTLTKEALP-VIRYRTRDLTRLLPGTA 304 (422)
T ss_pred cCCceeeccc------ccCCCce-EecCeeEEEEECCCCCCCCCCCCeeEEEEecCCccccc-eeeEEcCcEEEEECCCC
Confidence 42 1111110 0011110 0111223 444431 666655 1110 00011336666543 2
Q ss_pred --------cCCcccceeEECCcccChHhHHHHHHHhccccceeEEEee---C--CcEEEEEEecCCc------hhhcchH
Q psy14342 199 --------ERLALDETIMLRGMRYHPIDIENSVMRAHKKIAECAVFTW---T--NLLVVVVELDGNE------SEALDLV 259 (316)
Q Consensus 199 --------~~GR~dd~i~~~G~~v~p~eIE~~l~~~~p~v~~~~v~~~---~--~~~~~~v~~~~~~------~~~~~l~ 259 (316)
..||.||+|+++|.+|+|.|||++|.+ ||.|.+...+.. + +.+.+.+++.... .+.+.+.
T Consensus 305 r~~~~~~~i~GR~~d~i~~~G~~v~p~eie~~l~~-~~~v~~~~q~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~ 383 (422)
T TIGR02155 305 RTMRRMDRITGRSDDMLIIRGVNVFPTQLEEVILK-MDELSPHYQLELTRNGHMDELTLKVELKPESYTLRLHEQASLLA 383 (422)
T ss_pred CcccccccccCccCCeEEECCEEECHHHHHHHHHh-CcCcCCCEEEEEEcCCCccEEEEEEEEecCcccccchHHHHHHH
Confidence 289999999999999999999999999 999984443433 2 3566666655321 1223456
Q ss_pred HHHHHHHHHhcCeeecEEEEEcCCCcccCCCchhhHH
Q psy14342 260 PLVTNAVLEEHHLIVGVAVVVDPGVVPINSRGEKQRM 296 (316)
Q Consensus 260 ~~~~~~l~~~~~~~~~~~~~~~~~~lP~t~~gKi~r~ 296 (316)
+++++.+.+..+... .+.++.++.||+|+ ||+.|.
T Consensus 384 ~~i~~~~~~~~~~~~-~v~~~~~~~lp~~~-GK~~~~ 418 (422)
T TIGR02155 384 GEIQHTIKQEVGVSM-DVHLVEPGSLPRSE-GKARRV 418 (422)
T ss_pred HHHHHHHHhccCcEE-EEEEECCCCccCCC-CCceEE
Confidence 778888887767664 68888888999988 998763
|
Phenylacetate-CoA ligase (PA-CoA ligase) catalyzes the first step in aromatic catabolism of phenylacetic acid (PA) into phenylacetyl-CoA (PA-CoA). Often located in a conserved gene cluster with enzymes involved in phenylacetic acid activation (paaG/H/I/J), phenylacetate-CoA ligase has been found among the proteobacteria as well as in gram positive prokaryotes. In the B-subclass proteobacterium Azoarcus evansii, phenylacetate-CoA ligase has been shown to be induced under aerobic and anaerobic growth conditions. It remains unclear however, whether this induction is due to the same enzyme or to another isoenzyme restricted to specific anaerobic growth conditions. |
| >PF00501 AMP-binding: AMP-binding enzyme; InterPro: IPR000873 A number of prokaryotic and eukaryotic enzymes, which appear to act via an ATP-dependent covalent binding of AMP to their substrate, share a region of sequence similarity [, , ] | Back alignment and domain information |
|---|
Probab=99.91 E-value=1.7e-24 Score=199.36 Aligned_cols=204 Identities=18% Similarity=0.142 Sum_probs=147.5
Q ss_pred CeEEEEeccCCCCCceEEEEeHHHHHHHHHHHH--HHhcCCCCCceEEecCCcCChhhhHHHHhhhhcCceeeeeCCccc
Q psy14342 1 MLAYLDFSVSTTGMLAGIKMSHAAVTSLCRSMK--LACELYPSRHIALCLDPYCGLGFALWVLSSVYSGHHSILIPPSEV 78 (316)
Q Consensus 1 ~~a~i~~TSGTTG~PK~V~~t~~~l~~~~~~~~--~~~~~~~~d~~l~~~p~~h~~g~~~~~~~~l~~G~~~v~~~~~~~ 78 (316)
++++++|||||||.||+|.++|+++...+..+. ..+++. |+++.++|++|.+|++..++.++..|+++++.++...
T Consensus 156 ~~~~i~~TSGTTG~pK~v~~t~~~~~~~~~~~~~~~~~~~~--d~~l~~~p~~~~~g~~~~~~~~l~~G~~~~~~~~~~~ 233 (417)
T PF00501_consen 156 DPAFILFTSGTTGKPKGVVLTHRNLLAQARALALPEYFGLG--DRILSFLPLSHIFGLISALLAALFSGATLVLPSPFDL 233 (417)
T ss_dssp SEEEEEEESSSSSSEEEEEEEHHHHHHHHHHHHHHHTTTTT--TEEEESS-TTSHHHHHHHHHHHHHCTSEEEEESSHHH
T ss_pred ceeEeeccccccccccccccccccccccccccccccccccC--ceEEeeccccccccccccccccccccccccccccccc
Confidence 589999999999999999999999998877754 223333 6899999999999996669999999999999987654
Q ss_pred ccChHHHHHHHhccceeeEEecccchhhHHhhHHhh----hhh---cccccccc------------------cccccccc
Q psy14342 79 EVNPALWLSAVSQYRVRDTFCSYGMLAGIKMSHAAV----TSL---CRSMKLAC------------------ELYPSRHI 133 (316)
Q Consensus 79 ~~~~~~~~~~~~~~~~t~~~~~~~~~~~l~~~~~~~----~~~---~~~~~ls~------------------e~~~~yG~ 133 (316)
.++..|++.++++++++++++|+++..+....+.. ... .+.+-.++ .+.+.||+
T Consensus 234 -~~~~~~~~~i~~~~~t~~~~~p~~l~~l~~~~~~~~~~~~~~l~~lr~v~~~G~~l~~~~~~~~~~~~~~~~i~~~YG~ 312 (417)
T PF00501_consen 234 -FDPESLLELISRYKPTILFAVPSMLEALLQSPEEKTKISKKDLSSLRTVISGGEPLPPDLLRRLRKAFGNAPIINLYGS 312 (417)
T ss_dssp -HHHHHHHHHHHHHTESEEEEEHHHHHHHHHHHHTTHHGTTTTGTT-SEEEEESST-CHHHHHHHHHHHTTSEEEEEEEE
T ss_pred -cccccchhcccccccccccccccccccccccccccccccccccccccccccccccCChhhccccccccccccceecccc
Confidence 34778999999999999999999998776522111 001 11122222 18889999
Q ss_pred hhccCCCCCCCceEEEEeeeccCcccccCCCce-EEecCc------------eEEecC---CCcccCCCcC---------
Q psy14342 134 ALCLDPYCGLGFALWVLSSVYSGHHSILIPPSE-VEVNPA------------LWLSAV---SQYRVRDTFC--------- 188 (316)
Q Consensus 134 te~~~~~~~~~~~~~~~~~~~~g~~~~~~~g~~-~i~d~~------------l~v~~~---~gY~~~~~~~--------- 188 (316)
||++.......+. ......+..|.++||++ +++|++ |+++|+ .||+++++.+
T Consensus 313 tE~~~~~~~~~~~---~~~~~~~~~G~~~~~~~~~ivd~~~~~~~~~g~~Gei~i~~~~~~~gy~~~~~~~~~~~~~~~~ 389 (417)
T PF00501_consen 313 TETGSIATIRPPE---DDIEKPGSVGKPLPGVEVKIVDPNTGEPLPPGEPGEIVIRGPNVFSGYYNDPELTAEAFIDDGW 389 (417)
T ss_dssp GGGSSEEEEEETT---THHSSTTSEBEESTTEEEEEECTTTSSBESTTSEEEEEEESTTSBSEETTBHHHHHHHEETTSE
T ss_pred cccceeeeccccc---ccccccccccccccccccccccccccccccccccccccccCCccceeeeccccccccccccccc
Confidence 9998654311000 00112234556899999 888863 999999 8999975432
Q ss_pred --CCCceeee-cCc---CCcccceeEEC
Q psy14342 189 --SCNGALYQ-GAE---RLALDETIMLR 210 (316)
Q Consensus 189 --~~d~g~~~-~g~---~GR~dd~i~~~ 210 (316)
++|.|+++ +|. +||.||+||++
T Consensus 390 ~~TGD~g~~d~~G~~~~~GR~~~~i~~~ 417 (417)
T PF00501_consen 390 YRTGDLGRLDEDGYLYILGRSDDMIKVR 417 (417)
T ss_dssp EEEEEEEEEETTSEEEEEEEGSCEEEET
T ss_pred eecceEEEECCCCeEEEEEeeCCEEEeC
Confidence 22666666 344 99999999974
|
This region is a Ser/Thr/Gly-rich domain that is further characterised by a conserved Pro-Lys-Gly triplet. The family of enzymes includes luciferase, long chain fatty acid Co-A ligase, acetyl-CoA synthetase and various other closely-related synthetases.; GO: 0003824 catalytic activity, 0008152 metabolic process; PDB: 2V7B_A 2Y4O_B 2VSQ_A 3L8C_B 1RY2_A 3KXW_A 3LNV_A 3ETC_B 3A9U_A 3A9V_A .... |
| >KOG3628|consensus | Back alignment and domain information |
|---|
Probab=99.89 E-value=4.8e-21 Score=182.19 Aligned_cols=314 Identities=42% Similarity=0.671 Sum_probs=245.9
Q ss_pred eEEEEeccCCCCCceEEEEeHHHHHHHHHHHHHHhcCCCCCceEEecCCcCChhhhHHHHhhhhcCceeeeeCCcccccC
Q psy14342 2 LAYLDFSVSTTGMLAGIKMSHAAVTSLCRSMKLACELYPSRHIALCLDPYCGLGFALWVLSSVYSGHHSILIPPSEVEVN 81 (316)
Q Consensus 2 ~a~i~~TSGTTG~PK~V~~t~~~l~~~~~~~~~~~~~~~~d~~l~~~p~~h~~g~~~~~~~~l~~G~~~v~~~~~~~~~~ 81 (316)
+||+-|.--++|.--+|.++|.++++.+........+.+...++.+.+++.+.|+..+.+..+++|.+.++.+|.++..+
T Consensus 945 ~a~v~~~~~~dg~l~~~~msHsslla~Ck~iKe~~~l~~~rpl~~~~~~~sGlgf~~wcLlgVysGh~T~Li~p~~l~nn 1024 (1363)
T KOG3628|consen 945 PALVWFNVSTDGMLIGVKMSHSSLLAFCKIIKETCQLYKSRPLLGCSSPYSGLGFNHWCLLGVYSGHPTLLISPMDLENN 1024 (1363)
T ss_pred eEEEEEEecCCcceeeeeccHHHHHHHHHHHHHHHccccCCceEEEecCccchhHHHHHHHHHHcCCceeecCHHHhhcC
Confidence 68888888999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hHHHHHHHhccceeeEEecccchhhHHhhHHhhhhh--cccccccc------c------------------------ccc
Q psy14342 82 PALWLSAVSQYRVRDTFCSYGMLAGIKMSHAAVTSL--CRSMKLAC------E------------------------LYP 129 (316)
Q Consensus 82 ~~~~~~~~~~~~~t~~~~~~~~~~~l~~~~~~~~~~--~~~~~ls~------e------------------------~~~ 129 (316)
|..|+..++++++..++.+...+.......+..... .++.++++ | +--
T Consensus 1025 psLll~~i~~~kvkDt~~~~~tln~c~~~l~t~~enl~~~gnn~s~s~vv~~~~RPr~ali~sf~klfa~igLsp~avSt 1104 (1363)
T KOG3628|consen 1025 PSLLLQIISQYKVKDTYPTYSTLNLCQKGLETSVENLSKRGNNTSSSIVVPAEERPRIALIASFKKLFAAIGLSPRAVST 1104 (1363)
T ss_pred HHHHHHHHhcccccccchhHHHHHHHHhccccccchhhhhhcccccceeeecCCccHHHHHHHHHHHHHHcCCChhhhcc
Confidence 999999999999998888776665443332221110 12333322 1 111
Q ss_pred cccc----hhccCCCCCCCc-eEEE---------EeeeccC-cc-------cccCCCce-EEecCc------------eE
Q psy14342 130 SRHI----ALCLDPYCGLGF-ALWV---------LSSVYSG-HH-------SILIPPSE-VEVNPA------------LW 174 (316)
Q Consensus 130 ~yG~----te~~~~~~~~~~-~~~~---------~~~~~~g-~~-------~~~~~g~~-~i~d~~------------l~ 174 (316)
.|+. ..+..++.+.+| ..+. .+.++.| |+ |...++.+ .+++|+ ||
T Consensus 1105 sys~r~Np~Ic~r~~sg~~Pt~~y~D~raLR~grV~~ve~~ap~~l~L~dSG~~~~~~~i~IvnPEtk~pc~dge~GEIW 1184 (1363)
T KOG3628|consen 1105 SYSSRVNPFICLRSYSGPEPTTVYLDARALREGRVRLVEVGAPHSLLLYDSGKLPVYTDIAIVNPETKGPCRDGELGEIW 1184 (1363)
T ss_pred cccccCChHhhhccccCCCCcceeechhhhhccceeeeecCCCCccccccCCcccccceeEEeCCccccccccCCcceEE
Confidence 2221 122334555555 2222 2333333 33 34667888 888887 99
Q ss_pred EecC---CCcccCCCc--C-------------------CCCceeee-----cC--c-------CCcccceeEECCcccCh
Q psy14342 175 LSAV---SQYRVRDTF--C-------------------SCNGALYQ-----GA--E-------RLALDETIMLRGMRYHP 216 (316)
Q Consensus 175 v~~~---~gY~~~~~~--~-------------------~~d~g~~~-----~g--~-------~GR~dd~i~~~G~~v~p 216 (316)
+++. .+|++..+. + +++.||++ ++ . +|-.++.+-++|.+.+|
T Consensus 1185 ~~S~hnA~~~~~~~d~~~~~~fn~rl~~g~~~~~sy~RTG~LGFl~~t~~t~~~~e~~~~LyVlG~i~EtlEl~GL~h~p 1264 (1363)
T KOG3628|consen 1185 VNSAHNASCSFTIGDELRSNHFNARLSSGDLLGKSYARTGDLGFLRRTSLTDANVERHDLLYVLGAIDETLELNGLRHFP 1264 (1363)
T ss_pred eccccccccccccCchhhhhhhhhhccccccccccceeeeeeeeeeeeecccccceeeeeEEEeecccceeeecCcccCc
Confidence 9988 566543111 1 11556652 11 1 89999999999999999
Q ss_pred HhHHHHHHHhccccceeEEEeeCCcEEEEEEecCCchhhcchHHHHHHHHHHhcCeeecEEEEEcCCCcccCCCchhhHH
Q psy14342 217 IDIENSVMRAHKKIAECAVFTWTNLLVVVVELDGNESEALDLVPLVTNAVLEEHHLIVGVAVVVDPGVVPINSRGEKQRM 296 (316)
Q Consensus 217 ~eIE~~l~~~~p~v~~~~v~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~lP~t~~gKi~r~ 296 (316)
.+||+.+.+.||.|.+|+||-.++.+++++++.. ++...+|.-.+.+.+.+++++...-+.||+...+|+++.|..+|.
T Consensus 1265 ~DIE~TV~~vH~~I~~cavF~~~glvVvviE~~g-q~~~~~LvPlIv~~vL~eH~iI~dvV~fV~~G~~p~~~~gEK~R~ 1343 (1363)
T KOG3628|consen 1265 SDIETTVERVHPSIGGCAVFQATGLVVVVIECHG-QQELADLVPLIVNVVLEEHYIILDVVAFVDKGVFPRNSRGEKQRA 1343 (1363)
T ss_pred chHHHHHHHhcccccceeeEeeCCeEEEEEEecC-chhHhhhhHHHHHHHHhhcceEEEEEEEecCCccccCCchhhHHH
Confidence 9999999999999999999999999999999987 556667888888888889999999999999999999999999999
Q ss_pred HHHHHHHcCCCCcchhhccC
Q psy14342 297 HLRDGFLADQLDPIYVAYNM 316 (316)
Q Consensus 297 ~l~~~~~~~~~~~~~~~~~~ 316 (316)
.+++.|.+|++++.|+.++|
T Consensus 1344 ~I~~~w~~~kL~~~~v~yi~ 1363 (1363)
T KOG3628|consen 1344 HILDSWLAGKLDPIYVFYIR 1363 (1363)
T ss_pred HHHHHHHhcccceeeeeecC
Confidence 99999999999999999886
|
|
| >TIGR03335 F390_ftsA coenzyme F390 synthetase | Back alignment and domain information |
|---|
Probab=99.88 E-value=1.1e-20 Score=175.12 Aligned_cols=276 Identities=15% Similarity=0.135 Sum_probs=161.1
Q ss_pred CeEEEEeccCCCCCceEEEEeHHHHHHHHHHHHHH---hcCCCCCceEEecCCcCChhhhHHHHhhhhcCceeeeeCCcc
Q psy14342 1 MLAYLDFSVSTTGMLAGIKMSHAAVTSLCRSMKLA---CELYPSRHIALCLDPYCGLGFALWVLSSVYSGHHSILIPPSE 77 (316)
Q Consensus 1 ~~a~i~~TSGTTG~PK~V~~t~~~l~~~~~~~~~~---~~~~~~d~~l~~~p~~h~~g~~~~~~~~l~~G~~~v~~~~~~ 77 (316)
+++.+.|||||||.||+|.+||.++...+....+. .+++++|+++.+.|..+..+.....+.++..|++++...
T Consensus 87 ~i~~i~~TSGTTG~Pk~v~~T~~dl~~~~~~~~r~~~~~G~~~gD~vl~~~~~~~~~g~~~~~~~~~~~Ga~vi~~~--- 163 (445)
T TIGR03335 87 DIYTIHETSGTSGTPKSFFLTWDDWKRYAEKYARSFVSQGFTAGDRMVICASYGMNVGANTMTLAAREVGMSIIPEG--- 163 (445)
T ss_pred HeEEEEeCCCCCCCcceeeecHHHHHHHHHHHHHHHHHcCCCCCCeEEEEecCCcchhHHHHHHHHHHcCCEEEcCC---
Confidence 35788999999999999999999987766554443 488899999999988887776554567788898776432
Q ss_pred cccChHHHHHHHhccceeeEEecccchhhHHhhHHhhh-----hhcccccccc-----------------cccccccchh
Q psy14342 78 VEVNPALWLSAVSQYRVRDTFCSYGMLAGIKMSHAAVT-----SLCRSMKLAC-----------------ELYPSRHIAL 135 (316)
Q Consensus 78 ~~~~~~~~~~~~~~~~~t~~~~~~~~~~~l~~~~~~~~-----~~~~~~~ls~-----------------e~~~~yG~te 135 (316)
.+...++.+++++++++..+|+.+..+........ ...+.+-+++ .+++.||+||
T Consensus 164 ---~~~~~~~~i~~~~~t~l~~~ps~ll~La~~~~~~g~~~~~~~lr~ii~gGE~l~~~~r~~ie~~~g~~v~~~YG~TE 240 (445)
T TIGR03335 164 ---KCTFPIRIIESYRPTGIVASVFKLLRLARRMKAEGIDPAESSIRRLVVGGESFADESRNYVEELWGCEVYNTYGSTE 240 (445)
T ss_pred ---chhHHHHHHHHhCCCEEEECHHHHHHHHHHHHHcCCCcccCcceEEEEcCCCCCHHHHHHHHHHhCCcEEecCChhh
Confidence 12345789999999998888877655443222110 0112222222 2778999999
Q ss_pred ccCCCCCCCceEEEEeeeccCcccccCCCce-EEecCc------------eEEec----------C-CCcccC-------
Q psy14342 136 CLDPYCGLGFALWVLSSVYSGHHSILIPPSE-VEVNPA------------LWLSA----------V-SQYRVR------- 184 (316)
Q Consensus 136 ~~~~~~~~~~~~~~~~~~~~g~~~~~~~g~~-~i~d~~------------l~v~~----------~-~gY~~~------- 184 (316)
++... . +....|.+ ++-+... .++|++ |++.+ | ..|...
T Consensus 241 ~~~~~--~-------c~~~~g~h-~~~d~~~vEIvDp~~~~~vp~Ge~GELvvT~L~~~~~r~~~PliRYrtgD~~~~~~ 310 (445)
T TIGR03335 241 GTMCG--E-------CQAVAGLH-VPEDLVHLDVYDPRHQRFLPDGECGRIVLTTLLKPGERCGSLLINYDTEDTTVVIS 310 (445)
T ss_pred hhheE--E-------ecCCCCcc-ccCCceEEEEEcCCCCCCCcCCCceEEEEEecCCCCccCCceEEEeecCceEEEec
Confidence 74211 1 10011100 0111222 344433 22221 1 223221
Q ss_pred -CCcCCCCceeeecCcCCcccceeEECCcccChHhHHHHHHHhccccc---ee--EEE-eeC---CcEEEEEEecCCch-
Q psy14342 185 -DTFCSCNGALYQGAERLALDETIMLRGMRYHPIDIENSVMRAHKKIA---EC--AVF-TWT---NLLVVVVELDGNES- 253 (316)
Q Consensus 185 -~~~~~~d~g~~~~g~~GR~dd~i~~~G~~v~p~eIE~~l~~~~p~v~---~~--~v~-~~~---~~~~~~v~~~~~~~- 253 (316)
++..|+.....-. ..||.||+++++|.+|+|.+||++|.+ ++++. .. +++ ..+ +.+.+.++..+...
T Consensus 311 ~~~C~CGr~~~r~~-~~gR~dd~~~~~g~~~~p~~ie~~l~~-~~~~~~~~~~~~~~~~~~~~~~~~~~v~~e~~~~~~~ 388 (445)
T TIGR03335 311 RDRCPCGRTHMRIL-NPEREAETIWISGVPFNRVDVERAVFQ-RENMDSLTGEYEAFLYGEEEGEITLRVSLECEDKDNC 388 (445)
T ss_pred CCCCCCCCCcceeC-CCcccCceEEECCEEeCHHHHHHHHhc-cCCCCCCCccEEEEEecCCCCCceEEEEEEecCcccc
Confidence 1111211111111 279999999999999999999999998 64433 21 222 221 24555566654321
Q ss_pred hhcchHHHHHHH----HHH------hcCeeecEEEEEcCCCcccC-CCchhhH
Q psy14342 254 EALDLVPLVTNA----VLE------EHHLIVGVAVVVDPGVVPIN-SRGEKQR 295 (316)
Q Consensus 254 ~~~~l~~~~~~~----l~~------~~~~~~~~~~~~~~~~lP~t-~~gKi~r 295 (316)
..+++.+.+.+. +.. ..++. -.+.++....||++ ..||..|
T Consensus 389 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~k~~r 440 (445)
T TIGR03335 389 SIHDIQENFTGTFLKYKPELIGSYDEGIFQ-ILVNFTGPGELELHKIKGRPKR 440 (445)
T ss_pred hHHHHHHHHHHHHhhhhhhhhhhhhcceEE-EEEEEeCCCCccccccCCCcee
Confidence 223444444443 221 22333 36788888899998 3699765
|
This enzyme, characterized in Methanobacterium thermoautotrophicum and found in several other methanogens, modifies coenzyme F420 by ligation of AMP (or GMP) from ATP (or GTP). On F420, it activates an aromatic hydroxyl group, which is unusual chemistry for an adenylyltransferase. This enzyme name has been attached to numbers of uncharacterized genes likely to instead act as phenylacetate CoA ligase, based on proximity to predicted indolepyruvate ferredoxin oxidoreductase (1.2.7.8) genes. The enzyme acts during transient exposure of the organism to oxygen. |
| >COG1020 EntF Non-ribosomal peptide synthetase modules and related proteins [Secondary metabolites biosynthesis, transport, and catabolism] | Back alignment and domain information |
|---|
Probab=99.79 E-value=9e-19 Score=170.20 Aligned_cols=220 Identities=15% Similarity=0.144 Sum_probs=161.3
Q ss_pred CeEEEEeccCCCCCceEEEEeHHHHHHHHHHHHHHhcCCCCCceEEecCCcCChhhhHHHHhhhhcCceeeeeCCccccc
Q psy14342 1 MLAYLDFSVSTTGMLAGIKMSHAAVTSLCRSMKLACELYPSRHIALCLDPYCGLGFALWVLSSVYSGHHSILIPPSEVEV 80 (316)
Q Consensus 1 ~~a~i~~TSGTTG~PK~V~~t~~~l~~~~~~~~~~~~~~~~d~~l~~~p~~h~~g~~~~~~~~l~~G~~~v~~~~~~~~~ 80 (316)
+.+|++|||||||.||||..+|+++..........+++...|+++...++.++.+.+. +|.++..|+++++..+.. ..
T Consensus 367 ~~ayiiytsgstg~Pkgv~~~h~~~~~~~~~~~~~~~~~~~d~~l~~~s~~fD~~~~~-~f~~l~~G~~l~~~~~~~-~~ 444 (642)
T COG1020 367 ALAYIIYTSGSTGQPKGVRIEHRALANLLNDAGARFGLDADDRVLALASLSFDASVFE-IFGALLEGARLVLAPALL-QV 444 (642)
T ss_pred CeEEEEEccCCCCCCCCceecCHHHHHHHHHHHHhcCCCcccEEeecCCcccchhHHH-HHHHHhCCCEEEecCccc-cC
Confidence 4799999999999999999999999887777777799999999999999988877776 899999999999987664 56
Q ss_pred ChHHHHHHHhccceeeEEecccchhhHHhhHHhhh---h--hcccccccc-------------------cccccccchhc
Q psy14342 81 NPALWLSAVSQYRVRDTFCSYGMLAGIKMSHAAVT---S--LCRSMKLAC-------------------ELYPSRHIALC 136 (316)
Q Consensus 81 ~~~~~~~~~~~~~~t~~~~~~~~~~~l~~~~~~~~---~--~~~~~~ls~-------------------e~~~~yG~te~ 136 (316)
++..+.+.+.+++++++..+|..+..+........ . ..+.+..++ .+...||.||+
T Consensus 445 ~~~~l~~~~~~~~vt~~~~~p~~~~~~~~~~~~~~~~~~~~~lr~~~~gGe~l~~~~~~~~~~~~~~~~~l~~~ygpTe~ 524 (642)
T COG1020 445 DPAALLELLEAQGITVLLLVPLLLRLLLLAALAPDLISPCERLRQLLSGGEALPLALVQRLLQLAALARRLLNLYGPTEA 524 (642)
T ss_pred CHHHHHHHHHHcCCEEEEecHHHHHHHHhchhhccccCCcccccEEEEcCCCCCHHHHHHHHHhccccceEeeccCccHH
Confidence 78899999999999999877777665544311110 0 012222222 14667888885
Q ss_pred cCCCCCCCceEEEEeeec--cCcccccCCCce-EEecCc-----------eEEecC---CCcccCCCcCCC---------
Q psy14342 137 LDPYCGLGFALWVLSSVY--SGHHSILIPPSE-VEVNPA-----------LWLSAV---SQYRVRDTFCSC--------- 190 (316)
Q Consensus 137 ~~~~~~~~~~~~~~~~~~--~g~~~~~~~g~~-~i~d~~-----------l~v~~~---~gY~~~~~~~~~--------- 190 (316)
........ ..... .-|.|.|+++.. .+.|.. +++.|. .|||++++.+..
T Consensus 525 ~~~~~~~~-----~~~~~~~~~piG~p~~n~~~~ild~~~~~~p~gv~gel~i~g~~~a~gy~~~p~lt~~~f~~~~~y~ 599 (642)
T COG1020 525 TLDAPSFP-----ISAELESRVPIGRPVANTQLYILDQGLRPLPLGVPGELYIAGLGLALGYLNRPDLTAERFIALRLYR 599 (642)
T ss_pred hhheeeEE-----cccccCCCCCcceeeCCCeEEEECCCCCcCCCCCCeeeEECCcchhhhhcCChhhhHHHhhhccCcc
Confidence 32211111 01111 124556788877 777732 788888 899999877643
Q ss_pred --Cceee-ecCc---CCcccceeEECCcccChHhHHHHHHHhcc
Q psy14342 191 --NGALY-QGAE---RLALDETIMLRGMRYHPIDIENSVMRAHK 228 (316)
Q Consensus 191 --d~g~~-~~g~---~GR~dd~i~~~G~~v~p~eIE~~l~~~~p 228 (316)
|.+++ .+|. .||.|+++|++|++|.+.|||..+.. +|
T Consensus 600 tgD~~r~~~dg~~e~lgr~D~qvki~g~Riel~eie~~l~~-~~ 642 (642)
T COG1020 600 TGDLARPLADGALEYLGRKDSQVKIRGFRIELGEIEAALAE-QP 642 (642)
T ss_pred CCCeeeECCCCeEEEeccccceeEeceEecCcHHHHHHHhc-CC
Confidence 33332 3343 99999999999999999999999987 65
|
|
| >COG1541 PaaK Coenzyme F390 synthetase [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=99.77 E-value=1.4e-16 Score=142.57 Aligned_cols=272 Identities=15% Similarity=0.135 Sum_probs=169.3
Q ss_pred eEEEEeccCCCCCceEEEEeHHHHHHHHHHHHHHh---cCCCCCceEEecCCcCChhhhHHHHhhhhcCceeeeeCCccc
Q psy14342 2 LAYLDFSVSTTGMLAGIKMSHAAVTSLCRSMKLAC---ELYPSRHIALCLDPYCGLGFALWVLSSVYSGHHSILIPPSEV 78 (316)
Q Consensus 2 ~a~i~~TSGTTG~PK~V~~t~~~l~~~~~~~~~~~---~~~~~d~~l~~~p~~h~~g~~~~~~~~l~~G~~~v~~~~~~~ 78 (316)
...|..||||||+|+-+.+|+..+...+..+++.| +...+|++..+.-..-..|.....+++-..|++++-..+
T Consensus 92 i~~ihaSSGTTGkPt~~~~t~~D~~~wa~~~aR~~~~~g~~~gd~v~~~~~yGl~tgg~~~~~ga~rig~~vip~~~--- 168 (438)
T COG1541 92 IVRIHASSGTTGKPTVFGYTAKDIERWAELLARSLYSAGVRKGDKVQNAYGYGLFTGGLGLHYGAERIGATVIPISG--- 168 (438)
T ss_pred eEEEEccCCCCCCceeeecCHHHHHHHHHHHHHHHHHccCCCCCEEEEEeeeccccCCchhHHHHHhhCEEEEccCC---
Confidence 45688999999999999999998877777766655 567888887764421111222225667778888876654
Q ss_pred ccChHHHHHHHhccceeeEEecccchhhHHhhHHhhh-----hhccccccccc-----------------ccccccchhc
Q psy14342 79 EVNPALWLSAVSQYRVRDTFCSYGMLAGIKMSHAAVT-----SLCRSMKLACE-----------------LYPSRHIALC 136 (316)
Q Consensus 79 ~~~~~~~~~~~~~~~~t~~~~~~~~~~~l~~~~~~~~-----~~~~~~~ls~e-----------------~~~~yG~te~ 136 (316)
++..+.+.++.+++++++.++|+++..+....+... ...+..-+++| .++.||.||.
T Consensus 169 -g~~~~~~~l~~df~~tvI~~tps~~l~lae~~~~~G~~~~~~~lk~~i~gaE~~see~R~~ie~~~g~~~~diYGltE~ 247 (438)
T COG1541 169 -GNTERQLELMKDFKPTVIAATPSYLLYLAEEAEEEGIDPDKLSLKKGIFGAEPWSEEMRKVIENRFGCKAFDIYGLTEG 247 (438)
T ss_pred -ccHHHHHHHHHhcCCcEEEEChHHHHHHHHHHHHcCCChhhcceeEEEEecccCCHHHHHHHHHHhCCceeeccccccc
Confidence 356788999999999999999999887766554431 01122222322 7889999999
Q ss_pred cCCCCCCCceEEEEeeeccCcccccCCCce--EEecCc------------eEEecC-------CCcccCCCcCCCCceee
Q psy14342 137 LDPYCGLGFALWVLSSVYSGHHSILIPPSE--VEVNPA------------LWLSAV-------SQYRVRDTFCSCNGALY 195 (316)
Q Consensus 137 ~~~~~~~~~~~~~~~~~~~g~~~~~~~g~~--~i~d~~------------l~v~~~-------~gY~~~~~~~~~d~g~~ 195 (316)
....+..++ ...|.+ ...... .++||+ |.+..- -.|.-+ |.+.+
T Consensus 248 ~g~g~~eC~-------~~~glh--i~eD~~~~Ei~dP~t~e~l~dge~GelV~T~L~~~~~PlIRYrtg------Dit~i 312 (438)
T COG1541 248 FGPGAGECT-------ERNGLH--IWEDHFIFEIVDPETGEQLPDGERGELVITTLTKEGMPLIRYRTG------DITVI 312 (438)
T ss_pred cCCcccccc-------cccCCC--cchhhceeeeecCCcCccCCCCCeeEEEEEeccccCcceEEEEcC------CeeEe
Confidence 544322221 111210 111111 344433 111110 233322 22222
Q ss_pred ec-------------CcCCcccceeEECCcccChHhHHHHHHHhccccc---eeEEEee--CCcEEEEEEecCCchhh--
Q psy14342 196 QG-------------AERLALDETIMLRGMRYHPIDIENSVMRAHKKIA---ECAVFTW--TNLLVVVVELDGNESEA-- 255 (316)
Q Consensus 196 ~~-------------g~~GR~dd~i~~~G~~v~p~eIE~~l~~~~p~v~---~~~v~~~--~~~~~~~v~~~~~~~~~-- 255 (316)
.+ ...||.||+++..|.+|+|..||++|.+ .+.+. +..+-.. .+.+.+.+++.+...+.
T Consensus 313 ~~~~C~cGr~~~ri~~I~GR~dD~l~~~G~~vfp~~ie~~l~~-~~~~~~~yqi~~~~~~~~d~L~V~vE~~~~~~~~~~ 391 (438)
T COG1541 313 LSDPCGCGRTHRRIERIEGRSDDMLIVRGVNVFPSQIERVLLQ-IPEVTPHYQIILTRNGGLDELTVRVELENEAEELED 391 (438)
T ss_pred cccCCCCCCccccccccCcccccEEEECCEEeCHHHHHHHHhc-ccCCCceEEEEEecCCCCceEEEEEEecCcccchHH
Confidence 11 1299999999999999999999999999 99998 3333331 24678888887542111
Q ss_pred -cchHHHHHHHHHHhcCeeecEEEEEcCCCcccCCCchhhH
Q psy14342 256 -LDLVPLVTNAVLEEHHLIVGVAVVVDPGVVPINSRGEKQR 295 (316)
Q Consensus 256 -~~l~~~~~~~l~~~~~~~~~~~~~~~~~~lP~t~~gKi~r 295 (316)
..+...+...+....... ..+.++.+..+|+|. ||..|
T Consensus 392 ~~~~~~~l~~~~~~~~~~~-~~v~~v~~g~l~r~~-~K~kr 430 (438)
T COG1541 392 ERRLAKKLIKNIKSELGVR-VEVELVEPGELPRTE-GKAKR 430 (438)
T ss_pred HHHHHHHHHHHHHhhcCCc-eEEEEEeccceeccc-CceeE
Confidence 223345555555444444 368899989999987 46543
|
|
| >KOG1178|consensus | Back alignment and domain information |
|---|
Probab=99.72 E-value=5.2e-17 Score=158.60 Aligned_cols=293 Identities=16% Similarity=0.125 Sum_probs=168.6
Q ss_pred eEEEEeccCCCCCceEEEEeHHHHHHHHHHHHHHhcCCCCCceEEecC-C-cCChhhhHHHHhhhhcCceeeeeCCcccc
Q psy14342 2 LAYLDFSVSTTGMLAGIKMSHAAVTSLCRSMKLACELYPSRHIALCLD-P-YCGLGFALWVLSSVYSGHHSILIPPSEVE 79 (316)
Q Consensus 2 ~a~i~~TSGTTG~PK~V~~t~~~l~~~~~~~~~~~~~~~~d~~l~~~p-~-~h~~g~~~~~~~~l~~G~~~v~~~~~~~~ 79 (316)
.+++.||||+||.||+|.-+|..+....+.....|++...+++ ...+ . .|+.-.. ++.+++.....++.+.....
T Consensus 198 ~~~l~~tSgs~G~pk~v~~~~~sl~~~fdw~~~~f~~t~s~~~-~~~~~~~~~d~i~~--~~~~~L~~~~~l~~p~~~~~ 274 (1032)
T KOG1178|consen 198 TALLSFTSGSTGVPKGVAGTHFSLANAFDWMFTTFPPTGSDRF-TFKTSVYFDDTIQK--FIGALLFNGNNLLVPTATIK 274 (1032)
T ss_pred cceEeecccccccccccchhHHHHHhhhhhccccCCcCccchh-hhhheeecccchHH--HHhhHhhcCceeecccccCc
Confidence 5788999999999999999999999988888888888877765 3322 1 2222222 33444444434444333335
Q ss_pred cChHHHHHHHhccceeeEEecccchhhHHhhHHhh-hhh---------------ccccccccc--ccccccchhccCC--
Q psy14342 80 VNPALWLSAVSQYRVRDTFCSYGMLAGIKMSHAAV-TSL---------------CRSMKLACE--LYPSRHIALCLDP-- 139 (316)
Q Consensus 80 ~~~~~~~~~~~~~~~t~~~~~~~~~~~l~~~~~~~-~~~---------------~~~~~ls~e--~~~~yG~te~~~~-- 139 (316)
.+|..|.+.++++..++.+.+|+++..+....... +.. ++...++.| +.+.|+.++....
T Consensus 275 ~~~~~l~~~le~y~i~~~~~~~a~~~~l~~~~~~~~~~l~~~~~~~dl~~~~~~Lkl~~~~~ep~~v~l~~s~~~~~~~~ 354 (1032)
T KOG1178|consen 275 DTPGQLASTLERYGITVSHLLPAMCQLLLAILTTSLPLLEHAFSLSDLLTKRSCLKLVVLGGEPLLVSLYTSTFDLLAEI 354 (1032)
T ss_pred cchhhHHHHHHhhhheeeeechhhhhhhhhhcCcchhhhhhhhhcccccccchhheeeeecCCccchhhhhhhhhcccce
Confidence 56899999999999999999999876544332221 000 000111111 3333432221100
Q ss_pred -----CCCCCceEEE------EeeeccCcccccCCCce-EEec-------------------------Cc-----eEEec
Q psy14342 140 -----YCGLGFALWV------LSSVYSGHHSILIPPSE-VEVN-------------------------PA-----LWLSA 177 (316)
Q Consensus 140 -----~~~~~~~~~~------~~~~~~g~~~~~~~g~~-~i~d-------------------------~~-----l~v~~ 177 (316)
+...++.... ..........+...+.. .+++ ++ ....|
T Consensus 355 ~~~~~y~s~~~~~~~s~~~~~~s~~ll~~~~v~~~p~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~l~~~~~~~~~~~~g 434 (1032)
T KOG1178|consen 355 FFGLPYLSTDPTGLVSYDDFSPSKVLLTNENVYSVPKFDSIIGSLTVLESLYRAGGEGEGGVGKGCLGAEQNLSSWVVDG 434 (1032)
T ss_pred eeeecccCCCCccceeHHhhCcccceecceeEEeccchhhccCCCcceeeeeccCcccCCcccceeecccccccceeecc
Confidence 1111110000 00000000000000000 1000 00 11111
Q ss_pred -C--------CCcccCCCcC---CCCceee-ecCc---CCcccceeEECCcccChHhHHHHHHHhccccceeEEEeeC--
Q psy14342 178 -V--------SQYRVRDTFC---SCNGALY-QGAE---RLALDETIMLRGMRYHPIDIENSVMRAHKKIAECAVFTWT-- 239 (316)
Q Consensus 178 -~--------~gY~~~~~~~---~~d~g~~-~~g~---~GR~dd~i~~~G~~v~p~eIE~~l~~~~p~v~~~~v~~~~-- 239 (316)
. .-||....+- +.|.|.. .+|+ .||.|++||.+|.++...||+.++.+ ||.|.++.++...
T Consensus 435 ~~~~~~~~~~~~~~d~~~~r~y~tgD~gr~l~ng~l~~~GR~d~qIK~rG~Ri~L~ei~t~v~~-~p~v~~~itl~~~~~ 513 (1032)
T KOG1178|consen 435 YSTPENFLPNFLTVDGVKARIYRTGDNGRSLKNGGLEISGRADRQIKDRGVRIELGELNTVVEV-HPDVKEAITLARENS 513 (1032)
T ss_pred ccchhhcCCcccccccchhhcccccccceeecCCCEEEEEeccceEEEccEEEehhhhchhhcc-Ccchhhhheeeeecc
Confidence 0 1122222211 1145533 4444 99999999999999999999999999 9999999999883
Q ss_pred ---CcEEEEEEecCCchhhcchHHHHHHHHHHhcCeeecEEEEEcCCCcccCCCchhhHHHHHH
Q psy14342 240 ---NLLVVVVELDGNESEALDLVPLVTNAVLEEHHLIVGVAVVVDPGVVPINSRGEKQRMHLRD 300 (316)
Q Consensus 240 ---~~~~~~v~~~~~~~~~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~lP~t~~gKi~r~~l~~ 300 (316)
+++.+++....... ..+...+++++..+......+..+|..+++|+|++||+|+++|.+
T Consensus 514 ~~~~~l~aFvv~~~~~~--~~~~~~i~~~l~~~La~y~vPs~~V~l~~vPl~~~GKvDkkaL~~ 575 (1032)
T KOG1178|consen 514 TVGQTLLAFVVERGGSK--SVLIRDIRNYLKKELASYMLPSLVVPLAKVPLNPNGKVDKKALLE 575 (1032)
T ss_pred ccCceEEEEEeccCCCC--chhHHHHHHhhcccccceecceEEEEhhhCCcCCCCCcChhhhhh
Confidence 34666665554332 234666777777665554455567777799999999999999998
|
|
| >PRK09188 serine/threonine protein kinase; Provisional | Back alignment and domain information |
|---|
Probab=99.42 E-value=8.2e-13 Score=118.20 Aligned_cols=103 Identities=14% Similarity=0.064 Sum_probs=80.8
Q ss_pred CCCceeee--cCc---CCcccceeEECC---cccChHhHHHHHHHhccccceeEEEeeC-----CcEEEEEEecCCchhh
Q psy14342 189 SCNGALYQ--GAE---RLALDETIMLRG---MRYHPIDIENSVMRAHKKIAECAVFTWT-----NLLVVVVELDGNESEA 255 (316)
Q Consensus 189 ~~d~g~~~--~g~---~GR~dd~i~~~G---~~v~p~eIE~~l~~~~p~v~~~~v~~~~-----~~~~~~v~~~~~~~~~ 255 (316)
++|.|+++ +|. +||.| +| +||+|. ||++|.+ ||+|.+|+|+++. +.+++++++.. ..+.
T Consensus 213 TGDlg~~~d~dG~l~~~gR~~-----~G~~i~nV~p~-IE~~L~~-hp~V~eaaVvgvpd~~~ge~v~A~Vv~~~-~~~~ 284 (365)
T PRK09188 213 TGKKVYNFITRGLFSWSDGEG-----TGDRIDNEAPA-IQAALKS-DPAVSDVAIALFSLPAKGVGLYAFVEAEL-PADE 284 (365)
T ss_pred CCCEEEEEcCCCeEEEEecCc-----CCcCceeeCHH-HHHHHHh-CCCccEEEEEEEEcCCCCeEEEEEEEECC-CCCH
Confidence 44777762 343 89987 78 799999 9999999 9999999999983 46777776553 2344
Q ss_pred cchHHHHHHHHHHhcCeeecEEEEEcCCCcccCCCchhhHHHHHHHHHc
Q psy14342 256 LDLVPLVTNAVLEEHHLIVGVAVVVDPGVVPINSRGEKQRMHLRDGFLA 304 (316)
Q Consensus 256 ~~l~~~~~~~l~~~~~~~~~~~~~~~~~~lP~t~~gKi~r~~l~~~~~~ 304 (316)
+++.+++++.+. . +.| ..+.+++ +||+|++||++|++|++....
T Consensus 285 ~el~~~l~~~L~-~-kvP-~~v~~v~--~lP~t~~GKi~R~~Lr~~~~~ 328 (365)
T PRK09188 285 KSLRARLAGAKP-P-KPP-EHIQPVA--ALPRDADGTVRDDILRLIAMN 328 (365)
T ss_pred HHHHHHHHhhch-h-cCC-cEEEEEC--CCCCCCCCCccHHHHHHHhhc
Confidence 688889998888 4 554 5677776 899999999999999987643
|
|
| >TIGR03089 conserved hypothetical protein TIGR03089 | Back alignment and domain information |
|---|
Probab=99.08 E-value=3e-10 Score=95.92 Aligned_cols=77 Identities=18% Similarity=0.104 Sum_probs=66.5
Q ss_pred CeEEEEeccCCCCCceEEEEeHHHHHHHHHHHHHHhcCCCCCceEEecCCcCChhhhHHHHhhhhcCceeeeeCCccccc
Q psy14342 1 MLAYLDFSVSTTGMLAGIKMSHAAVTSLCRSMKLACELYPSRHIALCLDPYCGLGFALWVLSSVYSGHHSILIPPSEVEV 80 (316)
Q Consensus 1 ~~a~i~~TSGTTG~PK~V~~t~~~l~~~~~~~~~~~~~~~~d~~l~~~p~~h~~g~~~~~~~~l~~G~~~v~~~~~~~~~ 80 (316)
|++.|+||||+ +|+++..+. ..++++++|+++ .+|++|.+|+...++.++..|+++++.+..
T Consensus 151 D~a~l~yTsg~---------~~~~~~~~~----~~~~l~~~D~~l-~~Pl~H~~gl~~~~~~~l~~G~t~v~~~rF---- 212 (227)
T TIGR03089 151 APALVAGGGEW---------TGAELVAAA----RAAGLPPGDRVL-VLAWTDLEDFLATLLAPLAAGGSLVLVTHP---- 212 (227)
T ss_pred cceeeeccccc---------cHHHHHHHH----hhcCCCCCCeEE-ecCCCchHHHHHHHHHHhccCceEEEecCC----
Confidence 68999999986 677766654 567889999999 999999999988899999999999998532
Q ss_pred ChHHHHHHHhcccee
Q psy14342 81 NPALWLSAVSQYRVR 95 (316)
Q Consensus 81 ~~~~~~~~~~~~~~t 95 (316)
+|..+++.++++++|
T Consensus 213 d~~~~l~~i~~~~vT 227 (227)
T TIGR03089 213 DPARLDQIAETERVT 227 (227)
T ss_pred CHHHHHHHHHhhcCC
Confidence 789999999999986
|
This protein family is found, so far, only in the Actinobacteria (Streptomyces, Mycobacterium, Corynebacterium, Nocardia, Propionibacterium, etc.) and never more than one to a genome. Members show twilight-level sequence similarity to family of AMP-binding enzymes described by Pfam model pfam00501. |
| >TIGR02304 aden_form_hyp probable adenylate-forming enzyme | Back alignment and domain information |
|---|
Probab=99.00 E-value=1.5e-07 Score=86.46 Aligned_cols=255 Identities=13% Similarity=0.055 Sum_probs=129.7
Q ss_pred EEEeccCCCCCceEEEEeHHHHHHHHHH---HHHHhcCCCCCceEEecCCcCChhhhHHHHhhhhcCceeeeeCCccccc
Q psy14342 4 YLDFSVSTTGMLAGIKMSHAAVTSLCRS---MKLACELYPSRHIALCLDPYCGLGFALWVLSSVYSGHHSILIPPSEVEV 80 (316)
Q Consensus 4 ~i~~TSGTTG~PK~V~~t~~~l~~~~~~---~~~~~~~~~~d~~l~~~p~~h~~g~~~~~~~~l~~G~~~v~~~~~~~~~ 80 (316)
.+..||||||.|-.+..+.......... ...+.++..++++...+.- .+ .++.++... .+-++..++..
T Consensus 103 ~v~~TSGSSG~p~~f~~~~~~~~~~~a~~~~~~~~~g~~~g~r~a~~~~~---~~---~ly~~~~~~--~~~~~~~~l~~ 174 (430)
T TIGR02304 103 SVGLSSGTSGRRGLFVVSPEEQQMWAGGILAKVLPDGLFAKHRIAFFLRA---DN---NLYQSVNNR--WISLDFFDLLA 174 (430)
T ss_pred EEEECCCCCCCceEEEECHHHHHHHHHHHHhhhCccccccCCcEEEEEcc---Ch---hHHHHHHhc--cceeeecCCCc
Confidence 5667999999999999999854333222 1222355566666554311 11 123332221 12122223334
Q ss_pred ChHHHHHHHhccceeeEEecccchhhHHhhHHhhh--hhccccccccc-----------------ccccccchhccCCCC
Q psy14342 81 NPALWLSAVSQYRVRDTFCSYGMLAGIKMSHAAVT--SLCRSMKLACE-----------------LYPSRHIALCLDPYC 141 (316)
Q Consensus 81 ~~~~~~~~~~~~~~t~~~~~~~~~~~l~~~~~~~~--~~~~~~~ls~e-----------------~~~~yG~te~~~~~~ 141 (316)
+...+++.+.+++++++.+.|+.+..|........ ...+.+-.++| +++.||.|| +. .+
T Consensus 175 ~~~~~l~~L~~~~P~~L~g~pS~l~~LA~~~~~~~l~~~~k~ii~~~E~l~~~~r~~Ie~~fg~~V~~~YG~tE-g~-la 252 (430)
T TIGR02304 175 PFQAHIKRLNQRKPSIIVAPPSVLRALALEVMEGELTIKPKKVISVAEVLEPQDRELIRNVFKNTVHQIYQATE-GF-LA 252 (430)
T ss_pred CHHHHHHHHHHhCCCEEEEcHHHHHHHHHHHHhcCCCCCceEEEEccCCCCHHHHHHHHHHhCCCeeEccCCch-hh-eE
Confidence 56789999999999999999998887665433211 11122222221 778899999 32 21
Q ss_pred CCCceEEEEeeeccCcccccCCC---ce-EEecCc----eEEecC-------CCcccC-------CCcCCCCceeeecCc
Q psy14342 142 GLGFALWVLSSVYSGHHSILIPP---SE-VEVNPA----LWLSAV-------SQYRVR-------DTFCSCNGALYQGAE 199 (316)
Q Consensus 142 ~~~~~~~~~~~~~~g~~~~~~~g---~~-~i~d~~----l~v~~~-------~gY~~~-------~~~~~~d~g~~~~g~ 199 (316)
..+. .|.. ...+. +| .++|++ ..+.+- -.|..+ .+..|+.....-+..
T Consensus 253 ~eC~---------~g~l-Hl~ed~~~vE~~ivD~~~~~~~ViT~L~n~~~PlIRYrtGD~~~~~~~~C~CGr~~~~i~~I 322 (430)
T TIGR02304 253 STCR---------CGTL-HLNEDLVHIEKQYLDEHKRFVPIITDFTRTTQPIVRYRLNDILVESEQPCSCGSATMAIERI 322 (430)
T ss_pred EecC---------CCCE-EEccccEEEEeeEECCCCceEEEEecCCCccceEEeeeCCCEEEeCCCCCCCCCcccccCCc
Confidence 1111 1100 01111 11 134443 111111 223221 111122211112234
Q ss_pred CCcccceeEE---CCcc--cChHhHHHHHHHhccccceeEEEee-CCcEEEEEEecCCchhhcchHHHHHHHHHHhcCee
Q psy14342 200 RLALDETIML---RGMR--YHPIDIENSVMRAHKKIAECAVFTW-TNLLVVVVELDGNESEALDLVPLVTNAVLEEHHLI 273 (316)
Q Consensus 200 ~GR~dd~i~~---~G~~--v~p~eIE~~l~~~~p~v~~~~v~~~-~~~~~~~v~~~~~~~~~~~l~~~~~~~l~~~~~~~ 273 (316)
.||.||+++. +|.. |+|..++.+|....+.|.+.-++-. .+++.+.++... ...+.+.+...+.+....+..
T Consensus 323 ~GR~dD~l~~~~~~G~~v~v~p~~~~~~i~~~~~~i~~yQi~Q~~~~~l~v~~~~~~--~~~~~~~~~~~~~l~~~~~~~ 400 (430)
T TIGR02304 323 EGRQDDIFQLITRSGDEQTVFPDFIRRVILFTLPLIVEYRVLQTGSAQLELIADCEL--EMLEHCRSKALNALFTRQDIA 400 (430)
T ss_pred cCccCCEEEEecCCCCeEEeCHHHHHHHHHhcCCCCceEEEEEccCCeEEEEEEeCh--HHHHHHHHHHHHHHHHHcCCC
Confidence 8999999985 4544 5999999986653788887655533 355665555431 122334422333444455554
Q ss_pred ecEEEEE
Q psy14342 274 VGVAVVV 280 (316)
Q Consensus 274 ~~~~~~~ 280 (316)
...+.+.
T Consensus 401 ~~~~~~~ 407 (430)
T TIGR02304 401 VGQIIWS 407 (430)
T ss_pred cceEEEE
Confidence 3455555
|
Members of this family form a distinct clade within a larger family of proteins that also includes coenzyme F390 synthetase, an enzyme known in Methanobacterium thermoautotrophicum and a few other methanogenic archaea. That enzyme adenylates coenzyme F420 to F390, a reversible process, during oxygen stress. Other informative homologies include domains of the non-ribosomal peptide synthetases involved in activation by adenylation. The family defined by this model is likely to be of an adenylate-forming enzyme related to but distinct from coenzyme F390 synthetase. |
| >PF13193 AMP-binding_C: AMP-binding enzyme C-terminal domain; PDB: 3L8C_B 2VSQ_A 3R44_A 3RG2_B 3A9U_A 3A9V_A 3NI2_A 1V26_B 1ULT_B 1V25_B | Back alignment and domain information |
|---|
Probab=98.97 E-value=1e-09 Score=75.27 Aligned_cols=67 Identities=21% Similarity=0.238 Sum_probs=51.9
Q ss_pred hHHHHHHHhccccceeEEEeeC-----CcEEEEEEecCCchhhcchHHHHHHHHHHhcCeeecEEEEEcCCC-cccCCCc
Q psy14342 218 DIENSVMRAHKKIAECAVFTWT-----NLLVVVVELDGNESEALDLVPLVTNAVLEEHHLIVGVAVVVDPGV-VPINSRG 291 (316)
Q Consensus 218 eIE~~l~~~~p~v~~~~v~~~~-----~~~~~~v~~~~~~~~~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~-lP~t~~g 291 (316)
|||++|.+ ||+|.+|+|++.. +.+++++++ +.+++.+++++++. .+..| ..+.++..++ ||+|++|
T Consensus 1 EIE~~l~~-~~~V~~~~V~~~~d~~~g~~l~a~vv~-----~~~~i~~~~~~~l~-~~~~P-~~~~~v~~~~~lP~t~~G 72 (73)
T PF13193_consen 1 EIESVLRQ-HPGVAEAAVVGVPDEDWGERLVAFVVL-----DEEEIRDHLRDKLP-PYMVP-RRIRFVRLDEELPRTPSG 72 (73)
T ss_dssp HHHHHHHT-STTEEEEEEEEEEETTTEEEEEEEEEE-----HHHHHHHHHHHHS--GGGS--SEEEEEEESSSEEBETTS
T ss_pred CHHHHHhc-CCCccEEEEEEEEcccccccceeEEEe-----eecccccchhhhCC-Cccee-eEEEEccccCcCCCCCCC
Confidence 89999999 9999999999994 367777766 33788888888877 55555 3477775556 9999999
Q ss_pred h
Q psy14342 292 E 292 (316)
Q Consensus 292 K 292 (316)
|
T Consensus 73 K 73 (73)
T PF13193_consen 73 K 73 (73)
T ss_dssp S
T ss_pred C
Confidence 8
|
... |
| >PF14535 AMP-binding_C_2: AMP-binding enzyme C-terminal domain; PDB: 2Y27_A 2Y4N_A 3QOV_B 3S89_D 3LAX_A 2Y4O_B | Back alignment and domain information |
|---|
Probab=98.55 E-value=2.4e-07 Score=66.95 Aligned_cols=82 Identities=22% Similarity=0.278 Sum_probs=58.6
Q ss_pred CcccChHhHHHHHHHhccccceeEEEee---C--CcEEEEEEecCCch----hhcchHHHHHHHHHHhcCeeecEEEEEc
Q psy14342 211 GMRYHPIDIENSVMRAHKKIAECAVFTW---T--NLLVVVVELDGNES----EALDLVPLVTNAVLEEHHLIVGVAVVVD 281 (316)
Q Consensus 211 G~~v~p~eIE~~l~~~~p~v~~~~v~~~---~--~~~~~~v~~~~~~~----~~~~l~~~~~~~l~~~~~~~~~~~~~~~ 281 (316)
|.||+|.+||++|.+ +|++....-+.+ + +.+.+.+++.+... +.+++.+.+++.+.+..++.+ .+.+++
T Consensus 1 GvnvfP~~Ie~vl~~-~~~~~~~y~i~v~~~~~~D~l~v~vE~~~~~~~~~~~~~~l~~~i~~~lk~~lgv~~-~V~lv~ 78 (96)
T PF14535_consen 1 GVNVFPSQIEEVLRE-FPEVSPEYQIVVTREGGLDELTVRVELRPGFSDDAEDLEALAERIAERLKERLGVRP-EVELVP 78 (96)
T ss_dssp TEEE-HHHHHHHHCT-STTEEEEEEEEEEEETTEEEEEEEEEESTTCCTTHHHHHHHHHHHHHHHHHHHSS-E-EEEEE-
T ss_pred CcEECHHHHHHHHHh-CcCCCCcEEEEEEcCCCCcEEEEEEEECCccCcchHHHHHHHHHHHHHHHhhcCceE-EEEEEC
Confidence 789999999999999 999985333333 2 46888888887543 346788889999998888876 899999
Q ss_pred CCCcccCCCchhhH
Q psy14342 282 PGVVPINSRGEKQR 295 (316)
Q Consensus 282 ~~~lP~t~~gKi~r 295 (316)
+.+||++ .||..|
T Consensus 79 ~gtLpr~-~~K~~R 91 (96)
T PF14535_consen 79 PGTLPRS-EGKAKR 91 (96)
T ss_dssp TT-S----SSSS-S
T ss_pred CCCccCC-CCcceE
Confidence 9999997 588765
|
|
| >KOG3628|consensus | Back alignment and domain information |
|---|
Probab=98.54 E-value=4e-06 Score=82.02 Aligned_cols=311 Identities=21% Similarity=0.272 Sum_probs=183.2
Q ss_pred eEEEEeccCCCCCceEEEEeHHHHHHHHHH---------------H-----HHHhcCCCCCceEEecCCcCChhhhHHHH
Q psy14342 2 LAYLDFSVSTTGMLAGIKMSHAAVTSLCRS---------------M-----KLACELYPSRHIALCLDPYCGLGFALWVL 61 (316)
Q Consensus 2 ~a~i~~TSGTTG~PK~V~~t~~~l~~~~~~---------------~-----~~~~~~~~~d~~l~~~p~~h~~g~~~~~~ 61 (316)
..||-||++++|.--|++.+|. +..+.+. + ...+++...+.++..+...--.|++++++
T Consensus 252 ~~~i~~t~s~l~~~~g~V~~~~-~~~q~r~~~~~~nt~Pa~~~~~~~~~~~~~v~~~~~~~~~l~~~~~s~~lGlilGV~ 330 (1363)
T KOG3628|consen 252 YGYIEFTRSPLGNLIGVVYKHK-FLPQMRVLTSIPNTNPARFAAAFYGCLHAHVFPVPSEDVLLTNLDPSQQLGLILGVL 330 (1363)
T ss_pred eEEEEEeccchhceeeeEeecc-cccchhhhhhccCcChHHHHHhhhcchhhhccccCcccceeeccCcccccchhhhhh
Confidence 3689999999999999999998 4332221 1 11234555677777788888889999999
Q ss_pred hhhhcCceeeeeCCcccccChHHHHHHHhccceeeEEecccchh----hHHhhHH-hhh-hhcccccccc----------
Q psy14342 62 SSVYSGHHSILIPPSEVEVNPALWLSAVSQYRVRDTFCSYGMLA----GIKMSHA-AVT-SLCRSMKLAC---------- 125 (316)
Q Consensus 62 ~~l~~G~~~v~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~~----~l~~~~~-~~~-~~~~~~~ls~---------- 125 (316)
.++++|.+.+..+ ..+...|..|..++-++|.+.++.-...+. .+...+. ... ......++++
T Consensus 331 ~alfsg~c~i~~p-~~~l~~pG~~~~l~~k~R~~~~ltd~~~Lkq~~~ny~~~p~a~~s~~k~~t~d~sslk~C~Vtc~~ 409 (1363)
T KOG3628|consen 331 VALFSGYCTIGCP-KEVLKPPGLIANLITKYRATWSLTDYAGLKQPVYNYQEDPKATLSFKKYKTPDLSSLKGCMVTCTA 409 (1363)
T ss_pred hhhhcCceeecCc-hhhcCCCcchhhhhccceeEEEeecccccCcccccccCCcccccchhhccCCCccceeeeEEeeee
Confidence 9999999888765 446678899999999999997665422221 2222111 111 0112344544
Q ss_pred ---c---------------------------ccccc-------cchhccC-------CCCCCCc-eEEE------Eeee-
Q psy14342 126 ---E---------------------------LYPSR-------HIALCLD-------PYCGLGF-ALWV------LSSV- 153 (316)
Q Consensus 126 ---e---------------------------~~~~y-------G~te~~~-------~~~~~~~-~~~~------~~~~- 153 (316)
| +.... +++|.+. ....+++ +... .+.+
T Consensus 410 vd~~~~~ivs~~wlk~lg~~~~~~~~~p~l~ll~hGgi~is~k~~~~~~~~~~r~p~~~~~~~~~e~ll~~~~L~~~~V~ 489 (1363)
T KOG3628|consen 410 VDTEFQEIVSDRWLKPLGETNVKVVDFPILCLLWHGGIPISFKDWMEIGTVSIRRPEQMADTLPGEGLLSKEALKLNEVE 489 (1363)
T ss_pred cchHHHHHHHHhhcccccCcCcceeechhhhhhhcCceEEEeccchhhhcccccCcccccccCccceeeeccccccceEE
Confidence 0 00001 1122221 0111111 1111 0000
Q ss_pred ---c-------cCcccccCCCce--EEecCc------------eEEecC---CCcccCCCcCCC----------------
Q psy14342 154 ---Y-------SGHHSILIPPSE--VEVNPA------------LWLSAV---SQYRVRDTFCSC---------------- 190 (316)
Q Consensus 154 ---~-------~g~~~~~~~g~~--~i~d~~------------l~v~~~---~gY~~~~~~~~~---------------- 190 (316)
. ....+...||-. .+++|+ |||.++ +.||.-+..+..
T Consensus 490 v~~e~~is~~s~kd~~~i~~g~~t~~vv~~~t~~LC~~~eVGEIwVsS~~~~~~~~al~~~t~~~F~~~~~~s~~~~~~n 569 (1363)
T KOG3628|consen 490 VDTEDDISSLSVKDVLCIMPGDATLAVVNPDTNQLCKTDEVGEIWVSSNSLGKLFYALDKQTENTFKATPVESSGKPPSN 569 (1363)
T ss_pred EcchhhhhhcCccccceecccceEEEEeCCCcccccccCcceeEEEecCCcccceeeccccccceEEeeeccccCCCCcc
Confidence 0 000111334432 445554 999999 778765544432
Q ss_pred -------CceeeecCc---CCccccee-EECCcccChHhHHH---------HHHHhccccceeEEEeeCCcEEEEEEecC
Q psy14342 191 -------NGALYQGAE---RLALDETI-MLRGMRYHPIDIEN---------SVMRAHKKIAECAVFTWTNLLVVVVELDG 250 (316)
Q Consensus 191 -------d~g~~~~g~---~GR~dd~i-~~~G~~v~p~eIE~---------~l~~~~p~v~~~~v~~~~~~~~~~v~~~~ 250 (316)
=.||+++|. +|-.+|.+ ...|......+|-. .+.+--+.|=++.+|. .|+++++++=.+
T Consensus 570 ~~FmRtGLlGFv~~gki~vl~~k~d~llq~~~~~h~~d~iv~thya~~~iktV~R~v~~VF~~saf~-~E~~~Vv~~esP 648 (1363)
T KOG3628|consen 570 VPFMRTGLLGFVHNGKIYVLGLKEDGLLQVSGWRHNADDIVATHYAVELIKTVMRGVIAVFDVSAFE-DEHIVVVVLESP 648 (1363)
T ss_pred chhhhhcceeeeeCCeEEEEEechhhhhhhhhhhhhhhhhHhhHHHHHHHHHHHhccceEEEEeeee-cceEEEEEEeCc
Confidence 256777765 44444444 35666655544432 2222134444455555 566666554444
Q ss_pred Cch--hhcchHHHHHHHHHHhcCeeecEEEEEcCCCcccCCCchhhHHHHHHHHHcCCCCcchhhcc
Q psy14342 251 NES--EALDLVPLVTNAVLEEHHLIVGVAVVVDPGVVPINSRGEKQRMHLRDGFLADQLDPIYVAYN 315 (316)
Q Consensus 251 ~~~--~~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~lP~t~~gKi~r~~l~~~~~~~~~~~~~~~~~ 315 (316)
... +..+....+-+.+..-++.-++=+.+++.++||||+.|=|.-.+++++|.+|.+.+.|.++.
T Consensus 649 ~a~e~~~~q~~~~v~q~l~~iHqv~vyCilivP~~tLPrt~~~Gi~~~~~k~~F~~G~L~~~~v~f~ 715 (1363)
T KOG3628|consen 649 DATEENSFQWMSRVFQALDSIHQVGVYCILIVPANTLPRTPLGGIHNNECKQAFLEGSLPPSYVLFC 715 (1363)
T ss_pred chhhhhhhhHHHHHHHHHHHHhcccceEEEEeccccCCCccccccccHHHHHHHHcCCCCcceeeee
Confidence 332 22344555656666677777777899999999999998899999999999999999987764
|
|
| >PF04443 LuxE: Acyl-protein synthetase, LuxE; InterPro: IPR007534 LuxE is an acyl-protein synthetase found in bioluminescent bacteria | Back alignment and domain information |
|---|
Probab=95.20 E-value=0.51 Score=42.76 Aligned_cols=35 Identities=17% Similarity=0.060 Sum_probs=23.6
Q ss_pred eEEEEeccCCCCCceEEEEeHHHHHHHHHHHHHHh
Q psy14342 2 LAYLDFSVSTTGMLAGIKMSHAAVTSLCRSMKLAC 36 (316)
Q Consensus 2 ~a~i~~TSGTTG~PK~V~~t~~~l~~~~~~~~~~~ 36 (316)
+..++-||||||.|--+.+.+..+.....++...+
T Consensus 91 ~~~~~tSSGTtG~~S~i~~D~~t~~~~~~~~~~~~ 125 (365)
T PF04443_consen 91 VEKVFTSSGTTGQPSRIFRDRETAERQQKSLNKIF 125 (365)
T ss_pred heeEEECCCCCCCCcEEEECHHHHHHHHHHHHHHH
Confidence 34678899999998777777666655544444433
|
LuxE catalyses the formation of an acyl-protein thiolester from a fatty acid and a protein. This is the second step in the bioluminescent fatty acid reduction system, which converts tetradecanoic acid to the aldehyde substrate of the luciferase-catalysed bioluminescence reaction []. A conserved cysteine found at position 364 in Photobacterium phosphoreum LuxE (Q52100 from SWISSPROT) is thought to be acylated during the transfer of the acyl group from the synthetase subunit to the reductase. The C-terminal of the synthetase is though to act as a flexible arm to transfer acyl groups between the sites of activation and reduction []. A LuxE domain is also found in the Vibrio cholerae RBFN protein (Q06961 from SWISSPROT), which is involved in the biosynthesis of the O-antigen component 3-deoxy-L-glycero-tetronic acid. This entry represents the LuxE domain, which is found in archaeal and bacterial proteins.; GO: 0047474 long-chain fatty acid luciferin component ligase activity, 0008218 bioluminescence |
| >PF09580 Spore_YhcN_YlaJ: Sporulation lipoprotein YhcN/YlaJ (Spore_YhcN_YlaJ); InterPro: IPR019076 This entry contains YhcN and YlaJ, which are predicted lipoproteins that have been detected as spore proteins but not vegetative proteins in Bacillus subtilis | Back alignment and domain information |
|---|
Probab=80.94 E-value=10 Score=30.41 Aligned_cols=55 Identities=22% Similarity=0.171 Sum_probs=43.0
Q ss_pred ChHhHHHHHHHhccccceeEEEeeCCcEEEEEEecCCchhhcchHHHHHHHHHHhc
Q psy14342 215 HPIDIENSVMRAHKKIAECAVFTWTNLLVVVVELDGNESEALDLVPLVTNAVLEEH 270 (316)
Q Consensus 215 ~p~eIE~~l~~~~p~v~~~~v~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~l~~~~ 270 (316)
-..+|++.+.+ .|+|.+|.|+..++.+.+.+.+.......+++.+.+.+.+.+..
T Consensus 76 ~a~~i~~~v~~-~~~V~~A~vvv~~~~a~Vav~~~~~~~~~~~i~~~V~~~v~~~~ 130 (177)
T PF09580_consen 76 LADRIANRVKK-VPGVEDATVVVTDDNAYVAVDLDFNRFNTKKIKKKVEKAVKSAD 130 (177)
T ss_pred HHHHHHHHHhc-CCCceEEEEEEECCEEEEEEEecccccchhHHHHHHHHHHHHhC
Confidence 45678888888 99999999999999888888777433444678888888888544
|
Both appear to be expressed under control of the RNA polymerase sigma-G factor. The YlaJ-like members of this family have a low-complexity, strongly acidic, 40-residue C-terminal domain. |
Homologous Structure Templates
Structure Templates Detected by BLAST
Original result of BLAST against Protein Data Bank
No homologous structure with e-value below 0.005
Structure Templates Detected by RPS-BLAST
Original result of RPS-BLAST against PDB70 database
| >3kxw_A Saframycin MX1 synthetase B; fatty acid AMP ligase, SGX, acyl adenylate, structural genom 2, protein structure initiative; HET: 1ZZ; 1.85A {Legionella pneumophila subsp} PDB: 3lnv_A* Length = 590 | Back alignment and structure |
|---|
Score = 111 bits (280), Expect = 1e-27
Identities = 20/101 (19%), Positives = 44/101 (43%)
Query: 1 MLAYLDFSVSTTGMLAGIKMSHAAVTSLCRSMKLACELYPSRHIALCLDPYCGLGFALWV 60
+A+L ++ +T G+ +SH + + + + I L P+ +G +
Sbjct: 168 DIAFLQYTSGSTMHPKGVMVSHHNLLDNLNKIFTSFHMNDETIIFSWLPPHHDMGLIGCI 227
Query: 61 LSSVYSGHHSILIPPSEVEVNPALWLSAVSQYRVRDTFCSY 101
L+ +Y G +I++ P NP WL +++Y+ +
Sbjct: 228 LTPIYGGIQAIMMSPFSFLQNPLSWLKHITKYKATISGSPN 268
|
| >3kxw_A Saframycin MX1 synthetase B; fatty acid AMP ligase, SGX, acyl adenylate, structural genom 2, protein structure initiative; HET: 1ZZ; 1.85A {Legionella pneumophila subsp} PDB: 3lnv_A* Length = 590 | Back alignment and structure |
|---|
Score = 111 bits (279), Expect = 2e-27
Identities = 29/123 (23%), Positives = 51/123 (41%), Gaps = 10/123 (8%)
Query: 203 LDETIMLRGMRYHPIDIENSVMRAHKKI--AECAVFTWTN----LLVVVVELDGNESEAL 256
+ + I++ G ++P DIE S+M + +CA F L V+ E+ + +
Sbjct: 457 IKDLIIIYGKNHYPQDIEFSLMHSPLHHVLGKCAAFVIQEEHEYKLTVMCEVKNRFMDDV 516
Query: 257 D---LVPLVTNAVLEEHHLIVGVAVVVDPGVVPINSRGEKQRMHLRDGFLADQLDPIYVA 313
L + V E H L V V++ +P + G+ +R R L L PI
Sbjct: 517 AQDNLFNEIFELVYENHQLEVHTIVLIPLKAMPHTTSGKIRRNFCRKHLLDKTL-PIVAT 575
Query: 314 YNM 316
+ +
Sbjct: 576 WQL 578
|
| >3kxw_A Saframycin MX1 synthetase B; fatty acid AMP ligase, SGX, acyl adenylate, structural genom 2, protein structure initiative; HET: 1ZZ; 1.85A {Legionella pneumophila subsp} PDB: 3lnv_A* Length = 590 | Back alignment and structure |
|---|
Score = 95.8 bits (239), Expect = 3e-22
Identities = 22/101 (21%), Positives = 41/101 (40%), Gaps = 4/101 (3%)
Query: 88 AVSQYRVRDTFCSYGMLAGIKMSHAAVTSLCRSMKLACELYPSRHIALCLDPYCGLGFAL 147
A QY T S G+ +SH + + + + I L P+ +G
Sbjct: 170 AFLQY----TSGSTMHPKGVMVSHHNLLDNLNKIFTSFHMNDETIIFSWLPPHHDMGLIG 225
Query: 148 WVLSSVYSGHHSILIPPSEVEVNPALWLSAVSQYRVRDTFC 188
+L+ +Y G +I++ P NP WL +++Y+ +
Sbjct: 226 CILTPIYGGIQAIMMSPFSFLQNPLSWLKHITKYKATISGS 266
|
| >3t5a_A Long-chain-fatty-acid--AMP ligase FADD28; acetyl-COA synthetase like fold, AMP-binding; 2.05A {Mycobacterium tuberculosis} PDB: 3e53_A Length = 480 | Back alignment and structure |
|---|
Score = 50.5 bits (121), Expect = 3e-07
Identities = 20/99 (20%), Positives = 38/99 (38%), Gaps = 6/99 (6%)
Query: 2 LAYLDFSVSTTGMLAGIKMSHAAVTSLCRSMKLACEL------YPSRHIALCLDPYCGLG 55
AYL ++ +T AG+ MSH V + P+ + L Y +G
Sbjct: 185 TAYLQYTSGSTRTPAGVVMSHQNVRVNFEQLMSGYFADTDGIPPPNSALVSWLPFYHDMG 244
Query: 56 FALWVLSSVYSGHHSILIPPSEVEVNPALWLSAVSQYRV 94
+ + + + G+ ++L P PA W+ ++
Sbjct: 245 LVIGICAPILGGYPAVLTSPVSFLQRPARWMHLMASDFH 283
|
| >3t5a_A Long-chain-fatty-acid--AMP ligase FADD28; acetyl-COA synthetase like fold, AMP-binding; 2.05A {Mycobacterium tuberculosis} PDB: 3e53_A Length = 480 | Back alignment and structure |
|---|
Score = 44.7 bits (106), Expect = 2e-05
Identities = 16/85 (18%), Positives = 31/85 (36%), Gaps = 6/85 (7%)
Query: 105 AGIKMSHAAVTSLCRSMKLACEL------YPSRHIALCLDPYCGLGFALWVLSSVYSGHH 158
AG+ MSH V + P+ + L Y +G + + + + G+
Sbjct: 199 AGVVMSHQNVRVNFEQLMSGYFADTDGIPPPNSALVSWLPFYHDMGLVIGICAPILGGYP 258
Query: 159 SILIPPSEVEVNPALWLSAVSQYRV 183
++L P PA W+ ++
Sbjct: 259 AVLTSPVSFLQRPARWMHLMASDFH 283
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 43.3 bits (101), Expect = 9e-05
Identities = 50/368 (13%), Positives = 108/368 (29%), Gaps = 107/368 (29%)
Query: 13 GMLAGI-KMSHAAVTSLCRSMKLACELYPSR----HIALCLDPYCGLGFALWVLSSVYS- 66
G+ G K A +C S K+ C++ + ++ C P L L L
Sbjct: 157 GV-LGSGKTWVAL--DVCLSYKVQCKM-DFKIFWLNLKNCNSPETVLE-MLQKLLYQIDP 211
Query: 67 -----GHHSILIPPSEVEVNPA--------------LWLSAVSQYRVRDTF---CSYGML 104
HS I + L L V + + F C +L
Sbjct: 212 NWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLLVLLNVQNAKAWNAFNLSCK--IL 269
Query: 105 AGIKMSHAAVTSLCRSMKLACELYPSRHIALCLDPYC-GLG-------FALWVLSSVYSG 156
+T+ R ++ L + + LD + L ++
Sbjct: 270 ---------LTT--RFKQVTDFLSAATTTHISLDHHSMTLTPDEVKSLLLKYLDCRPQD- 317
Query: 157 HHSILIPPSEVEVNPALWLSAVSQYRVRDTFCSCNGALYQGAERL---------ALDETI 207
+P + NP LS +++ +RD + + + ++L L+
Sbjct: 318 -----LPREVLTTNP-RRLSIIAE-SIRDGLATWDNWKHVNCDKLTTIIESSLNVLEPAE 370
Query: 208 MLRGMRYHPIDIENSVMRAHKKIAECAVFT--WTNLLVVVVELDGNESEALDLVPL-VTN 264
+ + + SV I + + W +++ V + N+ LV
Sbjct: 371 YRK--MFDRL----SVFPPSAHIPT-ILLSLIWFDVIKSDVMVVVNKLHKYSLVEKQPKE 423
Query: 265 AVLEEHHLIVGVAVVVDPGVVPINSRGEKQRMHLR-------------DGFLADQLDP-- 309
+ + + + + V ++ + +H D + LD
Sbjct: 424 STISIPSIYLELKVKLE----------NEYALHRSIVDHYNIPKTFDSDDLIPPYLDQYF 473
Query: 310 -IYVAYNM 316
++ +++
Sbjct: 474 YSHIGHHL 481
|
Structure Templates Detected by HHsearch
Original result of HHsearch against PDB70 database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 316 | |||
| 1pg4_A | 652 | Acetyl-COA synthetase; AMP-forming, adenylate-form | 100.0 | |
| 3kxw_A | 590 | Saframycin MX1 synthetase B; fatty acid AMP ligase | 100.0 | |
| 4gs5_A | 358 | Acyl-COA synthetase (AMP-forming)/AMP-acid ligase | 100.0 | |
| 1mdb_A | 539 | 2,3-dihydroxybenzoate-AMP ligase; adenylation doma | 100.0 | |
| 3e7w_A | 511 | D-alanine--poly(phosphoribitol) ligase subunit 1; | 100.0 | |
| 3r44_A | 517 | Fatty acyl COA synthetase FADD13 (fatty-acyl-COA s | 100.0 | |
| 4fuq_A | 503 | Malonyl COA synthetase; ANL superfamily, methylma | 100.0 | |
| 3fce_A | 512 | D-alanine--poly(phosphoribitol) ligase subunit 1; | 100.0 | |
| 3ipl_A | 501 | 2-succinylbenzoate--COA ligase; structural genomic | 100.0 | |
| 3ni2_A | 536 | 4-coumarate:COA ligase; 4CL, phenylpropanoid biosy | 100.0 | |
| 2d1s_A | 548 | Luciferase, luciferin 4-monooxygenase; alpha/beta, | 100.0 | |
| 3g7s_A | 549 | Long-chain-fatty-acid--COA ligase (FADD-1); protei | 100.0 | |
| 1ry2_A | 663 | Acetyl-coenzyme A synthetase 1, acyl-activating en | 100.0 | |
| 3etc_A | 580 | AMP-binding protein; adenylate-forming acyl-COA sy | 100.0 | |
| 3o83_A | 544 | Peptide arylation enzyme; ligase, adenylation of 2 | 100.0 | |
| 1t5h_X | 504 | 4-chlorobenzoyl COA ligase; adenylate-forming coen | 100.0 | |
| 3nyq_A | 505 | Malonyl-COA ligase; A/B topology ababa sandwich be | 100.0 | |
| 3rix_A | 550 | Luciferase, luciferin 4-monooxygenase; oxidoreduct | 100.0 | |
| 3gqw_A | 576 | Fatty acid AMP ligase; FAAL, E. coli, ATP-dependen | 100.0 | |
| 1v25_A | 541 | Long-chain-fatty-acid-COA synthetase; ligase, stru | 100.0 | |
| 4dg8_A | 620 | PA1221; ANL superfamily, adenylation domain, pepti | 100.0 | |
| 3l8c_A | 521 | D-alanine--poly(phosphoribitol) ligase subunit 1; | 100.0 | |
| 3c5e_A | 570 | Acyl-coenzyme A synthetase ACSM2A, mitochondrial; | 100.0 | |
| 1amu_A | 563 | GRSA, gramicidin synthetase 1; peptide synthetase, | 100.0 | |
| 2v7b_A | 529 | Benzoate-coenzyme A ligase; benzoate oxidation, be | 100.0 | |
| 4gr5_A | 570 | Non-ribosomal peptide synthetase; MBTH-like domain | 100.0 | |
| 3ivr_A | 509 | Putative long-chain-fatty-acid COA ligase; structu | 100.0 | |
| 3rg2_A | 617 | Enterobactin synthase component E (ENTE), 2,3-DIH | 100.0 | |
| 3tsy_A | 979 | Fusion protein 4-coumarate--COA ligase 1, resvera | 100.0 | |
| 2vsq_A | 1304 | Surfactin synthetase subunit 3; ligase, peptidyl c | 100.0 | |
| 3ite_A | 562 | SIDN siderophore synthetase; ligase, non-ribosomal | 100.0 | |
| 3qov_A | 436 | Phenylacetate-coenzyme A ligase; acetyl-COA synthe | 100.0 | |
| 2y4o_A | 443 | Phenylacetate-coenzyme A ligase; phenylacetic acid | 100.0 | |
| 2y27_A | 437 | Phenylacetate-coenzyme A ligase; phenylacetic acid | 100.0 | |
| 3t5a_A | 480 | Long-chain-fatty-acid--AMP ligase FADD28; acetyl-C | 99.93 | |
| 3hgu_A | 369 | EHPF; phenazine, antibiotic, biosynthetic protein; | 99.81 | |
| 3lax_A | 109 | Phenylacetate-coenzyme A ligase; structural genomi | 99.71 | |
| 3gxs_A | 109 | Phenylacetate-coenzyme A ligase; APC62324.1, struc | 99.71 | |
| 4epl_A | 581 | Jasmonic acid-amido synthetase JAR1; ANL adenylati | 88.05 | |
| 3rix_A | 550 | Luciferase, luciferin 4-monooxygenase; oxidoreduct | 84.7 | |
| 4b2g_A | 609 | GH3-1 auxin conjugating enzyme; signaling protein, | 83.18 | |
| 3g7s_A | 549 | Long-chain-fatty-acid--COA ligase (FADD-1); protei | 81.28 | |
| 4eql_A | 581 | 4-substituted benzoates-glutamate ligase GH3.12; f | 80.86 | |
| 3ni2_A | 536 | 4-coumarate:COA ligase; 4CL, phenylpropanoid biosy | 80.39 |
| >1pg4_A Acetyl-COA synthetase; AMP-forming, adenylate-forming, thioester-forming, ligase; HET: COA PRX; 1.75A {Salmonella enterica} SCOP: e.23.1.1 PDB: 1pg3_A* 2p2f_A* 2p2b_A* 2p2q_A* 2p2j_A* 2p20_A* 2p2m_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=3.5e-45 Score=353.45 Aligned_cols=299 Identities=16% Similarity=0.103 Sum_probs=224.3
Q ss_pred CeEEEEeccCCCCCceEEEEeHHHHHHHH-HHHHHHhcCCCCCceEEecCCcCChhhhHHHHhhhhcCceeeeeCCcccc
Q psy14342 1 MLAYLDFSVSTTGMLAGIKMSHAAVTSLC-RSMKLACELYPSRHIALCLDPYCGLGFALWVLSSVYSGHHSILIPPSEVE 79 (316)
Q Consensus 1 ~~a~i~~TSGTTG~PK~V~~t~~~l~~~~-~~~~~~~~~~~~d~~l~~~p~~h~~g~~~~~~~~l~~G~~~v~~~~~~~~ 79 (316)
|++||+|||||||.||||+++|++++..+ ..+...+++.++|+++...|++|++|+.+.++.++..|+++++.+.....
T Consensus 257 d~a~ilyTSGTTG~PKgV~~sh~~~~~~~~~~~~~~~~~~~~d~~l~~~~~~~~~g~~~~~~~~L~~G~t~vl~~~~~~~ 336 (652)
T 1pg4_A 257 DPLFILYTSGSTGKPKGVLHTTGGYLVYAATTFKYVFDYHPGDIYWCTADVGWVTGHSYLLYGPLACGATTLMFEGVPNW 336 (652)
T ss_dssp SEEEEEEECCSSSSCEEEEEESHHHHHHHHHHHHHHTTCCTTCEEEECSCTTSHHHHHHTTHHHHHTTCEEEEECSCTTS
T ss_pred CCEEEEeccCCCCCCceEEECchHHHHHHHHHHHHhcCCCCCCEEEEccCCeeeechHHHHHHHHHcCceEEEECCCCCC
Confidence 68999999999999999999999987665 45566789999999999999999999866689999999999998764444
Q ss_pred cChHHHHHHHhccceeeEEecccchhhHHhhHHhh-h----hhcccccccc--------------------cccccccch
Q psy14342 80 VNPALWLSAVSQYRVRDTFCSYGMLAGIKMSHAAV-T----SLCRSMKLAC--------------------ELYPSRHIA 134 (316)
Q Consensus 80 ~~~~~~~~~~~~~~~t~~~~~~~~~~~l~~~~~~~-~----~~~~~~~ls~--------------------e~~~~yG~t 134 (316)
.+|..+++.++++++|+++.+|+++..+....... . ...+.+-..+ .+.+.||+|
T Consensus 337 ~~~~~~~~~i~~~~vt~~~~~P~~~~~l~~~~~~~~~~~~l~sLr~i~~gGe~l~~~~~~~~~~~~g~~~~~i~~~YG~T 416 (652)
T 1pg4_A 337 PTPARMCQVVDKHQVNILYTAPTAIRALMAEGDKAIEGTDRSSLRILGSVGEPINPEAWEWYWKKIGKEKCPVVDTWWQT 416 (652)
T ss_dssp SSTTHHHHHHHHHTCSEEEECHHHHHHHHTTGGGGTTTCCCTTCCEEEEESSCCCHHHHHHHHHHTTTTCSCEEEEBCCG
T ss_pred CCHHHHHHHHHHhCCeEEEeCHHHHHHHHhcCccccccCCcCceEEEEEecCCCCHHHHHHHHHHhCCCCCcEEccccCc
Confidence 57889999999999999999999987765543211 0 0011111111 267799999
Q ss_pred hccCCCCCCCceEEEEeeeccCcccccCCCce-EEecCc-----------eEEec--C---CCcccCCCcCC--------
Q psy14342 135 LCLDPYCGLGFALWVLSSVYSGHHSILIPPSE-VEVNPA-----------LWLSA--V---SQYRVRDTFCS-------- 189 (316)
Q Consensus 135 e~~~~~~~~~~~~~~~~~~~~g~~~~~~~g~~-~i~d~~-----------l~v~~--~---~gY~~~~~~~~-------- 189 (316)
|++.......+.. .....++.+.|++|++ +++|++ |+++| | .|||++++.+.
T Consensus 417 E~~~~~~~~~~~~---~~~~~~s~G~p~~g~~v~i~d~~g~~v~~g~~GEl~i~g~~p~~~~gY~~~~e~~~~~~~~~~~ 493 (652)
T 1pg4_A 417 ETGGFMITPLPGA---IELKAGSATRPFFGVQPALVDNEGHPQEGATEGNLVITDSWPGQARTLFGDHERFEQTYFSTFK 493 (652)
T ss_dssp GGSSCSBCCCTTT---CCBCTTCCBSBCTTCCEEEECTTCCBCCSSEEEEEEECSCCTTCCCEETTCHHHHHHHHHSSST
T ss_pred ccccceecCCCCC---cCccCCccccCcCCCeEEEECCCCCCcCCCceEEEEEccCCCchhhhhcCCHHHHHhhhhhcCC
Confidence 9976443332210 1123355667899999 888863 99999 5 89999876431
Q ss_pred -----CCceeeec-Cc---CCcccceeEECCcccChHhHHHHHHHhccccceeEEEeeC-----CcEEEEEEecCCchhh
Q psy14342 190 -----CNGALYQG-AE---RLALDETIMLRGMRYHPIDIENSVMRAHKKIAECAVFTWT-----NLLVVVVELDGNESEA 255 (316)
Q Consensus 190 -----~d~g~~~~-g~---~GR~dd~i~~~G~~v~p~eIE~~l~~~~p~v~~~~v~~~~-----~~~~~~v~~~~~~~~~ 255 (316)
+|.|++++ |. +||.||+||++|+||+|.|||++|.+ ||.|.+|+|++.. +.+++++++.+.....
T Consensus 494 g~y~TGDlg~~d~dG~l~i~GR~dd~Ik~~G~rI~~~eIE~~l~~-~p~V~ea~Vvg~~~~~~g~~l~a~Vv~~~~~~~~ 572 (652)
T 1pg4_A 494 NMYFSGDGARRDEDGYYWITGRVDDVLNVSGHRLGTAEIESALVA-HPKIAEAAVVGIPHAIKGQAIYAYVTLNHGEEPS 572 (652)
T ss_dssp TSEEEEEEEEECTTSCEEEEEESSSEEEETTEEEEHHHHHHHHHH-STTEEEEEEEEEEETTTEEEEEEEEEECTTCCCC
T ss_pred CEEECCcEEEEcCCCcEEEEecCCCEEEECCEEECHHHHHHHHHh-CCCcceEEEEEEEcCCCCeEEEEEEEECCCCCCC
Confidence 25566653 43 99999999999999999999999999 9999999999973 3578888776543322
Q ss_pred cchHHHHHHHHHHhcCe--eecEEEEEcCCCcccCCCchhhHHHHHHHHHcC
Q psy14342 256 LDLVPLVTNAVLEEHHL--IVGVAVVVDPGVVPINSRGEKQRMHLRDGFLAD 305 (316)
Q Consensus 256 ~~l~~~~~~~l~~~~~~--~~~~~~~~~~~~lP~t~~gKi~r~~l~~~~~~~ 305 (316)
+++.+++++.+.+.... .+..+.+++ .||+|++||++|++|++.+...
T Consensus 573 ~~~~~~l~~~l~~~l~~~~~P~~i~~v~--~lP~T~sGKi~R~~L~~~~~~~ 622 (652)
T 1pg4_A 573 PELYAEVRNWVRKEIGPLATPDVLHWTD--SLPKTRSGKIMRRILRKIAAGD 622 (652)
T ss_dssp HHHHHHHHHHHHHHTCGGGCCSEEEECS--CCCBCTTSCBCHHHHHHHHHTC
T ss_pred HHHHHHHHHHHHHhCCCCcCCeEEEEcC--CCCCCCCccchHHHHHHHHhCC
Confidence 33444555555544332 224555555 9999999999999999998864
|
| >3kxw_A Saframycin MX1 synthetase B; fatty acid AMP ligase, SGX, acyl adenylate, structural genom 2, protein structure initiative; HET: 1ZZ; 1.85A {Legionella pneumophila subsp} PDB: 3lnv_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.5e-45 Score=352.66 Aligned_cols=312 Identities=19% Similarity=0.217 Sum_probs=235.3
Q ss_pred CeEEEEeccCCCCCceEEEEeHHHHHHHHHHHHHHhcCCCCCceEEecCCcCChhhhHHHHhhhhcCceeeeeCCccccc
Q psy14342 1 MLAYLDFSVSTTGMLAGIKMSHAAVTSLCRSMKLACELYPSRHIALCLDPYCGLGFALWVLSSVYSGHHSILIPPSEVEV 80 (316)
Q Consensus 1 ~~a~i~~TSGTTG~PK~V~~t~~~l~~~~~~~~~~~~~~~~d~~l~~~p~~h~~g~~~~~~~~l~~G~~~v~~~~~~~~~ 80 (316)
|+++|+|||||||.||||++||+++...+......+++.++|+++.++|++|++|++..++.+++.|+++++.++..+..
T Consensus 168 d~a~i~~TSGTTG~PKgV~~th~~l~~~~~~~~~~~~~~~~d~~l~~~p~~h~~g~~~~~~~~l~~G~~~v~~~~~~~~~ 247 (590)
T 3kxw_A 168 DIAFLQYTSGSTMHPKGVMVSHHNLLDNLNKIFTSFHMNDETIIFSWLPPHHDMGLIGCILTPIYGGIQAIMMSPFSFLQ 247 (590)
T ss_dssp SEEEEEECSSCSSSCCEEEEEHHHHHHHHHHHHHHTTCCTTCEEEECSCTTSHHHHHTTTHHHHHHTCEEEECCHHHHHH
T ss_pred CeEEEEeCcCCCCCceEEEeeHHHHHHHHHHHHHhhCCCCcCeEEEecCCCcchhhHHHHHHHHhcCceEEEeCHHHHHH
Confidence 68999999999999999999999999999999999999999999999999999999877889999999999988766666
Q ss_pred ChHHHHHHHhccceeeEEecccchhhHHhhHHhhh------hhcccccccc-----------------------cccccc
Q psy14342 81 NPALWLSAVSQYRVRDTFCSYGMLAGIKMSHAAVT------SLCRSMKLAC-----------------------ELYPSR 131 (316)
Q Consensus 81 ~~~~~~~~~~~~~~t~~~~~~~~~~~l~~~~~~~~------~~~~~~~ls~-----------------------e~~~~y 131 (316)
+|..|++.++++++|++..+|..+..+........ ...+.+-.++ .+++.|
T Consensus 248 ~~~~~~~~i~~~~~t~~~~~p~~~~~l~~~~~~~~~~~~~l~~lr~~~~gg~~l~~~~~~~~~~~~~~~g~~~~~~~~~Y 327 (590)
T 3kxw_A 248 NPLSWLKHITKYKATISGSPNFAYDYCVKRIREEKKEGLDLSSWVTAFNGAEPVREETMEHFYQAFKEFGFRKEAFYPCY 327 (590)
T ss_dssp CTHHHHHHHHHHTCSEEEECTHHHHHHHHHCCGGGGTTCCCTTCCEEEECSSCCCHHHHHHHHHHHGGGTCCGGGEEEEE
T ss_pred CHHHHHHHHHHhCCeeecCChhHHHHHHHHhhhhhccCCCchhhHHHhhCCCCCCHHHHHHHHHHHHHcCCCcccccccc
Confidence 89999999999999988887776654433211100 0001111111 157789
Q ss_pred cchhccCCCCCCCc-----eEEEE-----------------eeeccCcccccCCCceEEecCc------------eEEec
Q psy14342 132 HIALCLDPYCGLGF-----ALWVL-----------------SSVYSGHHSILIPPSEVEVNPA------------LWLSA 177 (316)
Q Consensus 132 G~te~~~~~~~~~~-----~~~~~-----------------~~~~~g~~~~~~~g~~~i~d~~------------l~v~~ 177 (316)
|+||++.......+ ..... .....++.|.|++++ +++|++ |+++|
T Consensus 328 G~TE~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~p~~~v-~i~d~~~~~~~~~g~~GEl~v~g 406 (590)
T 3kxw_A 328 GLAEATLLVTGGTPGSSYKTLTLAKEQFQDHRVHFADDNSPGSYKLVSSGNPIQEV-KIIDPDTLIPCDFDQVGEIWVQS 406 (590)
T ss_dssp ECGGGSSEEEECCTTSCCCEEEECSCCCSSSBCCBCCTTCTTCEEEECCCEESSEE-EEECTTTCCBCCTTBCEEEEEES
T ss_pred ccccccceeecccCCCCceeeeecHHHHhcCceeeccCCCCCcceEeccCCCCCCe-EEEcCCCCcCCCCCCEEEEEEeC
Confidence 99999754322111 00000 000011233356663 344432 99999
Q ss_pred C---CCcccCCCcC-------------------CCCceeeecCc---CCcccceeEECCcccChHhHHHHH-HHhccccc
Q psy14342 178 V---SQYRVRDTFC-------------------SCNGALYQGAE---RLALDETIMLRGMRYHPIDIENSV-MRAHKKIA 231 (316)
Q Consensus 178 ~---~gY~~~~~~~-------------------~~d~g~~~~g~---~GR~dd~i~~~G~~v~p~eIE~~l-~~~~p~v~ 231 (316)
+ .|||++++.+ ++|.|++++|. +||.||+||++|+||+|.|||++| .. ||.|.
T Consensus 407 ~~v~~GY~~~p~~t~~~f~~~~~~~~~g~~~~~TGDlg~~ddG~l~~~GR~dd~Ik~~G~~v~p~eIE~~l~~~-~~~v~ 485 (590)
T 3kxw_A 407 NSVAKGYWNQPEETRHAFAGKIKDDERSAIYLRTGDLGFLHENELYVTGRIKDLIIIYGKNHYPQDIEFSLMHS-PLHHV 485 (590)
T ss_dssp TTSCCCBTTCHHHHHHHHCBCCTTC---CCBEEEEEEEEEETTEEEEEEESSCHHHHHHHTTHHHHHHHHHHHS-GGGGG
T ss_pred CcccccccCChhHHHHHHhccccCCCCCCcEEecCcEEEEECCEEEEEcCccceEEECCEecCHHHHHHHHHhc-Ccccc
Confidence 9 9999987643 22556566554 999999999999999999999999 55 99998
Q ss_pred --eeEEEeeC----CcEEEEEEecCCc---hhhcchHHHHHHHHHHhcCeeecEEEEEcCCCcccCCCchhhHHHHHHHH
Q psy14342 232 --ECAVFTWT----NLLVVVVELDGNE---SEALDLVPLVTNAVLEEHHLIVGVAVVVDPGVVPINSRGEKQRMHLRDGF 302 (316)
Q Consensus 232 --~~~v~~~~----~~~~~~v~~~~~~---~~~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~lP~t~~gKi~r~~l~~~~ 302 (316)
+|+|+++. +.+++++++.... .+.+++.+++++.+...++.+...+.++..++||+|++||++|++|++.+
T Consensus 486 ~~~~~v~~~~~~~~~~~~~~v~~~~~~~~~~~~~~l~~~l~~~l~~~~~~p~~~i~~v~~~~lP~t~sGKi~R~~L~~~~ 565 (590)
T 3kxw_A 486 LGKCAAFVIQEEHEYKLTVMCEVKNRFMDDVAQDNLFNEIFELVYENHQLEVHTIVLIPLKAMPHTTSGKIRRNFCRKHL 565 (590)
T ss_dssp EEEEEEEEEEETTEEEEEEEEEESCTTCCHHHHHHHHHHHHHHHHHHHSCCCCEEEEEETTCSCCCSCHHHHHHHHHHHH
T ss_pred CccEEEEEecCCCCceEEEEEEeccccccchhHHHHHHHHHHHHHHHcCCceeEEEEECCCccCcCCCcHHHHHHHHHHH
Confidence 78888873 3567777766542 34568899999999877777766888998889999999999999999999
Q ss_pred HcCCCCcchhhc
Q psy14342 303 LADQLDPIYVAY 314 (316)
Q Consensus 303 ~~~~~~~~~~~~ 314 (316)
.++++..+..|.
T Consensus 566 ~~~~~~~~~~~~ 577 (590)
T 3kxw_A 566 LDKTLPIVATWQ 577 (590)
T ss_dssp HHTCSCCSEEEE
T ss_pred HcCCCceeeeec
Confidence 999988776544
|
| >4gs5_A Acyl-COA synthetase (AMP-forming)/AMP-acid ligase protein; structural genomics, PSI-biology; 2.02A {Dyadobacter fermentans} | Back alignment and structure |
|---|
Probab=100.00 E-value=2.5e-45 Score=330.12 Aligned_cols=282 Identities=14% Similarity=0.092 Sum_probs=212.6
Q ss_pred CeEEEEeccCCCCCceEEEEeHHHHHHHHHHHHHHhcCCCCCceEEecCCcCChhhhHHHHhhhhcCceeeeeCCccccc
Q psy14342 1 MLAYLDFSVSTTGMLAGIKMSHAAVTSLCRSMKLACELYPSRHIALCLDPYCGLGFALWVLSSVYSGHHSILIPPSEVEV 80 (316)
Q Consensus 1 ~~a~i~~TSGTTG~PK~V~~t~~~l~~~~~~~~~~~~~~~~d~~l~~~p~~h~~g~~~~~~~~l~~G~~~v~~~~~~~~~ 80 (316)
|+|||+|||||||.||||++||+++..++......++++++|++++++|++|++|++. ++.++..|+++++.++..
T Consensus 38 ~~a~Il~TSGTTG~PKgV~~th~~l~~~~~~~~~~~~~~~~d~~l~~~pl~h~~gl~~-~~~~l~~g~~~~~~~~~~--- 113 (358)
T 4gs5_A 38 AREFVLHTSGSTGMPKPITVTRAQLAASAAMTGKALSLGPGTRALVCLNVGYIAGLMM-LVRGMELDWELTVTEPTA--- 113 (358)
T ss_dssp CSEEEEEEECTTSSEEEEEEEHHHHHHHHHHHHHHTTCCTTCEEEECSCTTSHHHHHH-HHHHHHHTCEEEEECCCS---
T ss_pred CCEEEEECCcccccCcEEEEeHHHHHHHHHHHHHHhCCCCCCEEEEECChHHHHHHHH-HHHHHHhCcEEEecCccc---
Confidence 6899999999999999999999999999999999999999999999999999999987 788999999999886542
Q ss_pred ChHHHHHHHhccceeeEEecccchhhHHhhHHhhh--hhcccccccc----------------cccccccchhccCCCCC
Q psy14342 81 NPALWLSAVSQYRVRDTFCSYGMLAGIKMSHAAVT--SLCRSMKLAC----------------ELYPSRHIALCLDPYCG 142 (316)
Q Consensus 81 ~~~~~~~~~~~~~~t~~~~~~~~~~~l~~~~~~~~--~~~~~~~ls~----------------e~~~~yG~te~~~~~~~ 142 (316)
++ ++.++++++|+++.+|+++..+........ ...+.+-.++ .+++.||+||++.....
T Consensus 114 ~~---~~~i~~~~~t~~~~~P~~l~~ll~~~~~~~~l~~lr~v~~gG~~l~~~~~~~~~~~~~~~~~~YG~TEt~~~~~~ 190 (358)
T 4gs5_A 114 NP---LAGLDHADFDFVAMVPMQLQSILENSATSGQVDRLGKVLLGGAPVNHALAMQISDLAMPVYQSYGMTETVSHVAL 190 (358)
T ss_dssp CT---TTTCSSCCCSEEEECHHHHHHHHHCTTTGGGGGGGCSEEECSSCCCHHHHHHHHTCSSCEEEEEECGGGSSEEEE
T ss_pred cH---HHHHHHhCCeEEEcChHHHHHhhccccccccCCcceEEEEcccCCCchheecccccCceEEeccccccccceeec
Confidence 23 578899999999999998876654332211 1112222222 28899999998753321
Q ss_pred CCceEEEEeeeccCcccccCCCce-EEec-CceEEecC---CCcccCCCcCCCCceeeecCc---CCcccceeEECCccc
Q psy14342 143 LGFALWVLSSVYSGHHSILIPPSE-VEVN-PALWLSAV---SQYRVRDTFCSCNGALYQGAE---RLALDETIMLRGMRY 214 (316)
Q Consensus 143 ~~~~~~~~~~~~~g~~~~~~~g~~-~i~d-~~l~v~~~---~gY~~~~~~~~~d~g~~~~g~---~GR~dd~i~~~G~~v 214 (316)
.. ......|..+++.||++ .+.+ ++|+++|+ .||+. ++|.|++++++ +||.||+||++|+||
T Consensus 191 ~~-----~~~~~~g~~~~~~pgv~~~~~~~Gel~~~g~~~~~g~~~-----TGDlg~~d~~g~~~~GR~dd~Ik~~G~~v 260 (358)
T 4gs5_A 191 KA-----LNGPEASELYVFLPGIQYGVDERGCLHISGAVTNGQTVQ-----TNDLVEIHGNAFQWIGRADNVINSGGVKI 260 (358)
T ss_dssp EE-----CSSTTCCSCEEECTTCEEEECTTSEEEEESGGGTTCCEE-----EEEEEEECSSEEEEEEEGGGEEEETTEEE
T ss_pred cc-----ccccccceeeccCCCeEEEecCcCceEEecccccCccee-----cCCccccccCceEEcccccCeEEECCEEE
Confidence 11 01112234445889999 5544 34999998 34432 45888887665 999999999999999
Q ss_pred ChHhHHHHHH---HhccccceeEEEe-e-----CCcEEEEEEecCCchhhcchHHHHHHHHHHhcCeeecEEEEEcCCCc
Q psy14342 215 HPIDIENSVM---RAHKKIAECAVFT-W-----TNLLVVVVELDGNESEALDLVPLVTNAVLEEHHLIVGVAVVVDPGVV 285 (316)
Q Consensus 215 ~p~eIE~~l~---~~~p~v~~~~v~~-~-----~~~~~~~v~~~~~~~~~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~l 285 (316)
+|.|||++|. + ||.|.+|+|+. . ++.++++++......+.+++.++++++|. .+..| ..+.+++ +|
T Consensus 261 ~p~eIE~~l~~~~~-~p~V~~a~vv~~~~d~~~ge~~~a~v~~~~~~~~~~~l~~~l~~~L~-~~~~P-~~i~~v~--~l 335 (358)
T 4gs5_A 261 VLDQIDQRIAAVFH-HLNIGNAFFCWWEPDAKLGQKLVLVIENAMPEALTERLTAEIRSRVS-TYENP-KHIYFAK--AF 335 (358)
T ss_dssp EHHHHHHHHHHHHH-HHTCCCCEEEEEEEETTTEEEEEEEEESCCCHHHHHHHHHHHHHHSC-GGGSC-SCEEEES--SC
T ss_pred CHHHHHHHHHHhcc-CCCccEEEEEEecCCccCCEEEEEEEECCCCCcCHHHHHHHHHhhCC-CCCCc-eEEEEEC--Cc
Confidence 9999998774 5 89999988774 3 23566766665555555678888887776 45554 4677776 89
Q ss_pred ccCCCchhhHHHHHHHHHc
Q psy14342 286 PINSRGEKQRMHLRDGFLA 304 (316)
Q Consensus 286 P~t~~gKi~r~~l~~~~~~ 304 (316)
|+|++||++|++|++++++
T Consensus 336 P~t~~GKi~R~~L~~~l~e 354 (358)
T 4gs5_A 336 AKTQTDKIDKRATFQKLSD 354 (358)
T ss_dssp CBCTTSCBCHHHHHHHTC-
T ss_pred CCCCCCChhHHHHHHHhhh
Confidence 9999999999999999876
|
| >1mdb_A 2,3-dihydroxybenzoate-AMP ligase; adenylation domain, peptide synthetase, antibiotic biosynthesis, siderophore formation; HET: AMP DBH; 2.15A {Bacillus subtilis} SCOP: e.23.1.1 PDB: 1md9_A* 1mdf_A | Back alignment and structure |
|---|
Probab=100.00 E-value=2.7e-45 Score=347.18 Aligned_cols=298 Identities=15% Similarity=0.129 Sum_probs=224.4
Q ss_pred CeEEEEeccCCCCCceEEEEeHHHHHHHHHHHHHHhcCCCCCceEEecCCcCChhhhH-HHHhhhhcCceeeeeCCcccc
Q psy14342 1 MLAYLDFSVSTTGMLAGIKMSHAAVTSLCRSMKLACELYPSRHIALCLDPYCGLGFAL-WVLSSVYSGHHSILIPPSEVE 79 (316)
Q Consensus 1 ~~a~i~~TSGTTG~PK~V~~t~~~l~~~~~~~~~~~~~~~~d~~l~~~p~~h~~g~~~-~~~~~l~~G~~~v~~~~~~~~ 79 (316)
|+++|+|||||||.||||++||+++...+......+++.++|+++.++|++|.+++.. .++.++..|+++++.+..
T Consensus 183 d~a~i~~TSGTTG~PKgV~~th~~~~~~~~~~~~~~~~~~~d~~l~~~p~~h~~~~~~~~~~~~l~~G~~~v~~~~~--- 259 (539)
T 1mdb_A 183 DVAFLQLSGGSTGLSKLIPRTHDDYIYSLKRSVEVCWLDHSTVYLAALPMAHNYPLSSPGVLGVLYAGGRVVLSPSP--- 259 (539)
T ss_dssp SEEEEEECCCSSSSCCEEEEEHHHHHHHHHHHHHHHTCCTTCEEEECSCTTSHHHHHSSHHHHHHHTTCEEEECSSS---
T ss_pred ceEEEEeCCCcCCCCcEEEEehHHHHHHHHHHHHhhCCCCCCEEEEeecccccchhhHHHHHHHHHhCCEEEECCCC---
Confidence 6899999999999999999999999999888888899999999999999999999875 588999999999997642
Q ss_pred cChHHHHHHHhccceeeEEecccchhhHHhhHHhhhh---hcccccccc-----------------cccccccchhccCC
Q psy14342 80 VNPALWLSAVSQYRVRDTFCSYGMLAGIKMSHAAVTS---LCRSMKLAC-----------------ELYPSRHIALCLDP 139 (316)
Q Consensus 80 ~~~~~~~~~~~~~~~t~~~~~~~~~~~l~~~~~~~~~---~~~~~~ls~-----------------e~~~~yG~te~~~~ 139 (316)
+|..+++.++++++|+++.+|+++..+......... ..+.+-.++ .+++.||+||++..
T Consensus 260 -~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~l~~lr~~~~gG~~l~~~~~~~~~~~~~~~~~~~YG~TE~~~~ 338 (539)
T 1mdb_A 260 -SPDDAFPLIEREKVTITALVPPLAMVWMDAASSRRDDLSSLQVLQVGGAKFSAEAARRVKAVFGCTLQQVFGMAEGLVN 338 (539)
T ss_dssp -SHHHHHHHHHHHTCSEEEECHHHHHHHHHHHHHCCCCCTTCCEEEEESSCCCHHHHTTHHHHTCSEEEEEEECTTSCEE
T ss_pred -CHHHHHHHHHHcCCeEEEccHHHHHHHHhCccccCCCccceeEEEEcCCCCCHHHHHHHHHHhCCcEEEEEcCCCCccc
Confidence 688999999999999999999988766554332110 111111222 27889999996422
Q ss_pred CCCCCceEEEEeeeccCcccccCCCc-e-EEecCc-----------eEEecC---CCcccCCCcCC-----------CCc
Q psy14342 140 YCGLGFALWVLSSVYSGHHSILIPPS-E-VEVNPA-----------LWLSAV---SQYRVRDTFCS-----------CNG 192 (316)
Q Consensus 140 ~~~~~~~~~~~~~~~~g~~~~~~~g~-~-~i~d~~-----------l~v~~~---~gY~~~~~~~~-----------~d~ 192 (316)
....... .....++.|.|+++. + +++|++ |+++|+ .|||++++.+. +|.
T Consensus 339 ~~~~~~~----~~~~~~~~G~p~~~~~~~~i~d~~~~~~~~g~~GEl~v~g~~v~~GY~~~~~~t~~~f~~~g~~~TGDl 414 (539)
T 1mdb_A 339 YTRLDDP----EEIIVNTQGKPMSPYDESRVWDDHDRDVKPGETGHLLTRGPYTIRGYYKAEEHNAASFTEDGFYRTGDI 414 (539)
T ss_dssp ECCTTSC----HHHHHHCCCEESSTTCEEEEECTTSCBCCTTCCEEEEEECTTSCSSCTTCHHHHHHHBCTTSCEEEEEE
T ss_pred ccCCCCc----HHhcCCCCCcccCCCceEEEECCCCCCCcCCCcceEEeeCcccchhhcCChhhhhhhccCCCCeecCce
Confidence 2111100 001112444577654 6 777753 999999 89999976542 256
Q ss_pred eeeec-Cc---CCcccceeEECCcccChHhHHHHHHHhccccceeEEEeeC-----CcEEEEEEecCCchhhcchHHHHH
Q psy14342 193 ALYQG-AE---RLALDETIMLRGMRYHPIDIENSVMRAHKKIAECAVFTWT-----NLLVVVVELDGNESEALDLVPLVT 263 (316)
Q Consensus 193 g~~~~-g~---~GR~dd~i~~~G~~v~p~eIE~~l~~~~p~v~~~~v~~~~-----~~~~~~v~~~~~~~~~~~l~~~~~ 263 (316)
|++++ |. +||.||+||++|+||+|.|||++|.+ ||.|.+|+|++.. +.++++++......+.+++.+.++
T Consensus 415 g~~~~dG~l~~~GR~dd~ik~~G~~v~p~eIE~~l~~-~p~V~~a~vv~~~~~~~g~~~~a~vv~~~~~~~~~~l~~~l~ 493 (539)
T 1mdb_A 415 VRLTRDGYIVVEGRAKDQINRGGEKVAAEEVENHLLA-HPAVHDAAMVSMPDQFLGERSCVFIIPRDEAPKAAELKAFLR 493 (539)
T ss_dssp EEECTTSCEEEEEEGGGCEECSSCEECHHHHHHHHTT-STTEEEEEEEEEEETTTEEEEEEEEEESSSCCCHHHHHHHHH
T ss_pred EEECCCCcEEEeccccceEEECCEEECHHHHHHHHHh-CCCcceEEEEeccccccCceEEEEEEECCCCCCHHHHHHHHH
Confidence 66654 43 99999999999999999999999999 9999999999883 356777766644444566777777
Q ss_pred HH-HHHhcCeeecEEEEEcCCCcccCCCchhhHHHHHHHHHcCCCCcchh
Q psy14342 264 NA-VLEEHHLIVGVAVVVDPGVVPINSRGEKQRMHLRDGFLADQLDPIYV 312 (316)
Q Consensus 264 ~~-l~~~~~~~~~~~~~~~~~~lP~t~~gKi~r~~l~~~~~~~~~~~~~~ 312 (316)
++ +. .+..| ..+.+++ +||+|++||++|++|++.+.+ +++.+|.
T Consensus 494 ~~~L~-~~~~P-~~i~~v~--~lP~t~~GKi~r~~L~~~~~~-~i~~~y~ 538 (539)
T 1mdb_A 494 ERGLA-AYKIP-DRVEFVE--SFPQTGVGKVSKKALREAISE-KLLAGFK 538 (539)
T ss_dssp HTTCC-GGGSC-SEEEECS--SCCBCTTSCBCHHHHHHHHHH-HHHTC--
T ss_pred hCCCC-cccCC-CEEEEec--cCCCCCCcCEeHHHHHHHHHH-HHhcccc
Confidence 65 55 44444 4566665 899999999999999999886 6777764
|
| >3e7w_A D-alanine--poly(phosphoribitol) ligase subunit 1; DLTA, non-ribosomal peptide synthetase, NRPS, adenylation domain, D-alanylation; HET: AMP; 2.28A {Bacillus subtilis} PDB: 3e7x_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=8.5e-45 Score=341.70 Aligned_cols=298 Identities=12% Similarity=0.120 Sum_probs=222.0
Q ss_pred CeEEEEeccCCCCCceEEEEeHHHHHHHHHHHHHHhcCCCCCceEEecCCcCChhhhHHHHhhhhcCceeeeeCCccccc
Q psy14342 1 MLAYLDFSVSTTGMLAGIKMSHAAVTSLCRSMKLACELYPSRHIALCLDPYCGLGFALWVLSSVYSGHHSILIPPSEVEV 80 (316)
Q Consensus 1 ~~a~i~~TSGTTG~PK~V~~t~~~l~~~~~~~~~~~~~~~~d~~l~~~p~~h~~g~~~~~~~~l~~G~~~v~~~~~~~~~ 80 (316)
|+++|+|||||||.||||++||+++...+......+++.++|+++.++|++|+++++. ++.++..|+++++.+.. ...
T Consensus 144 ~~a~i~~TSGTTG~PKgV~~sh~~l~~~~~~~~~~~~~~~~d~~l~~~p~~~~~~~~~-~~~~l~~G~~~~~~~~~-~~~ 221 (511)
T 3e7w_A 144 ETFYIIYTSGSTGNPKGVQISAANLQSFTDWICADFPVSGGKIFLNQAPFSFDLSVMD-LYPCLQSGGTLHCVTKD-AVN 221 (511)
T ss_dssp SEEEEEEECCTTSSCEEEEEEHHHHHHHHHHHHHHSTTTTTCEEEECSCTTSTHHHHH-HHHHHHTTCEEEECCHH-HHH
T ss_pred CeEEEEECCCCCCCCCEEEEcHHHHHHHHHHHHHhcCCCccceEEEeCCccHHHHHHH-HHHHHhcCCEEEEcChh-hhc
Confidence 6899999999999999999999999999988888999999999999999999999876 89999999999987543 234
Q ss_pred ChHHHHHHHhccceeeEEecccchhhHHhhHHhhhh---hcccccccc------------------cccccccchhccCC
Q psy14342 81 NPALWLSAVSQYRVRDTFCSYGMLAGIKMSHAAVTS---LCRSMKLAC------------------ELYPSRHIALCLDP 139 (316)
Q Consensus 81 ~~~~~~~~~~~~~~t~~~~~~~~~~~l~~~~~~~~~---~~~~~~ls~------------------e~~~~yG~te~~~~ 139 (316)
+|..+++.++++++|+++.+|+++..+......... ..+.+..++ .+++.||+||++..
T Consensus 222 ~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~l~~~~~~G~~l~~~~~~~~~~~~~~~~i~~~YG~TE~~~~ 301 (511)
T 3e7w_A 222 KPKVLFEELKKSGLNVWTSTPSFVQMCLMDPGFSQDLLPHADTFMFCGEVLPVSVAKALLERFPKAKIFNTYGPTEATVA 301 (511)
T ss_dssp SHHHHHHHHHHHCCSEEEECHHHHHHHHTSTTCSTTTCTTCCEEEECSSCCCHHHHHHHHHHCTTCEEEECCCCGGGSSC
T ss_pred CHHHHHHHHHHcCCcEEEecHHHHHHHHhccccccccCCcccEEEEecCCCCHHHHHHHHHHCCCcEEEeCcccchheee
Confidence 788999999999999999999988765543321111 111111222 27889999999754
Q ss_pred CCCCCceEEEEeeeccCcccccCCCce-EEecCc-----------eEEecC---CCcccCCCcCC--------------C
Q psy14342 140 YCGLGFALWVLSSVYSGHHSILIPPSE-VEVNPA-----------LWLSAV---SQYRVRDTFCS--------------C 190 (316)
Q Consensus 140 ~~~~~~~~~~~~~~~~g~~~~~~~g~~-~i~d~~-----------l~v~~~---~gY~~~~~~~~--------------~ 190 (316)
................++.|.++||++ +++|++ |+++|+ .|||++++.+. +
T Consensus 302 ~~~~~~~~~~~~~~~~~~~G~~~~~~~~~i~d~~g~~~~~g~~GEl~v~g~~v~~GY~~~~~~t~~~f~~~~g~~~~~TG 381 (511)
T 3e7w_A 302 VTSVEITNDVISRSESLPVGFAKPDMNIFIMDEEGQPLPEGEKGEIVIAGPSVSRGYLGEPELTEKAFFSHEGQWAYRTG 381 (511)
T ss_dssp SEEEEECHHHHTTCSSCCCBEECTTCEEEEECTTSCBCCTTCCEEEEEESTTSCCCBTTCHHHHHHHEEESSSSEEEEEE
T ss_pred eeEEeccccccccCCcCCCcceeCCCEEEEECCCCCCCCCCCceEEEEecCccChhhCCCcccchhhhcCCCCCEEEeCC
Confidence 321110000000011124556899999 888864 999999 89999876542 2
Q ss_pred CceeeecCc---CCcccceeEECCcccChHhHHHHHHHhccccceeEEEeeC-----CcEEEEEEecCCchh-hcchHHH
Q psy14342 191 NGALYQGAE---RLALDETIMLRGMRYHPIDIENSVMRAHKKIAECAVFTWT-----NLLVVVVELDGNESE-ALDLVPL 261 (316)
Q Consensus 191 d~g~~~~g~---~GR~dd~i~~~G~~v~p~eIE~~l~~~~p~v~~~~v~~~~-----~~~~~~v~~~~~~~~-~~~l~~~ 261 (316)
|.|++++|. +||.||+||++|+||+|.|||++|.+ ||.|.+|+|++.. +.+++++++...... ..++.+.
T Consensus 382 Dlg~~~dG~l~~~GR~~d~ik~~G~~v~p~eIE~~l~~-~p~V~~a~vv~~~~~~~~~~~~a~vv~~~~~~~~~~~~~~~ 460 (511)
T 3e7w_A 382 DAGFIQDGQIFCQGRLDFQIKLHGYRMELEEIEFHVRQ-SQYVRSAVVIPYQPNGTVEYLIAAIVPEEHEFEKEFQLTSA 460 (511)
T ss_dssp EEEEEETTEEEEEEESSSEEEETTEEEEHHHHHHHHHH-STTEEEEEEEEECSSSSCCEEEEEEEECCCCCSSHHHHHHH
T ss_pred CeEEccCCeEEEEccccCEEEECCEEeCHHHHHHHHHh-CCCcceEEEEEEcCCCCceEEEEEEEeccccccchhhHHHH
Confidence 566666664 99999999999999999999999999 9999999999873 356777766654322 2234455
Q ss_pred HHHHHHHh---cCeeecEEEEEcCCCcccCCCchhhHHHHHHHHHc
Q psy14342 262 VTNAVLEE---HHLIVGVAVVVDPGVVPINSRGEKQRMHLRDGFLA 304 (316)
Q Consensus 262 ~~~~l~~~---~~~~~~~~~~~~~~~lP~t~~gKi~r~~l~~~~~~ 304 (316)
+++.+.+. +..| ..+.++ ++||+|++||++|++|++.+..
T Consensus 461 l~~~l~~~L~~~~~P-~~~~~v--~~lP~t~~GKi~R~~L~~~~~~ 503 (511)
T 3e7w_A 461 IKKELAASLPAYMIP-RKFIYQ--DHIQMTANGKIDRKRIGEEVLV 503 (511)
T ss_dssp HHHHHHHHSCGGGSC-SEEEEC--SCCCBCTTSCBCHHHHHHHHHH
T ss_pred HHHHHHhhCchhhCC-eeEEEe--ccCCCCCCcCccHHHHHhHHhh
Confidence 55555543 3333 445554 4899999999999999999875
|
| >3r44_A Fatty acyl COA synthetase FADD13 (fatty-acyl-COA synthetase); ligase; HET: HIS; 1.80A {Mycobacterium tuberculosis} PDB: 3t5c_A 3t5b_A | Back alignment and structure |
|---|
Probab=100.00 E-value=2.2e-44 Score=339.26 Aligned_cols=291 Identities=15% Similarity=0.123 Sum_probs=218.7
Q ss_pred CeEEEEeccCCCCCceEEEEeHHHHHHHHHHHHHHhcCCCCCceEEecCCcCChhhhHHHHhhhhcCceeeeeCCccccc
Q psy14342 1 MLAYLDFSVSTTGMLAGIKMSHAAVTSLCRSMKLACELYPSRHIALCLDPYCGLGFALWVLSSVYSGHHSILIPPSEVEV 80 (316)
Q Consensus 1 ~~a~i~~TSGTTG~PK~V~~t~~~l~~~~~~~~~~~~~~~~d~~l~~~p~~h~~g~~~~~~~~l~~G~~~v~~~~~~~~~ 80 (316)
|+++|+|||||||.||||++||+++...+......+++.++|+++.++|++|++++...++.. +.|+++++.+..
T Consensus 171 d~a~i~~TSGTTG~PKgV~~sh~~l~~~~~~~~~~~~~~~~d~~l~~~p~~~~~~~~~~~~~~-~~G~~~v~~~~~---- 245 (517)
T 3r44_A 171 DNLFIMYTSGTTGHPKGVVHTHESVHSAASSWASTIDVRYRDRLLLPLPMFHVAALTTVIFSA-MRGVTLISMPQF---- 245 (517)
T ss_dssp SEEEEEEECC---CCEEEEEEHHHHHHHHHHHHHHSCCCTTCEEEECSCTTSHHHHHHHHHHH-HHTCEEEECSSC----
T ss_pred CeEEEEECCcccccCceeeeeHHHHHHHHHHHHHhcCCCCCCEEEEeCchHHHHHHHHHHHHH-hcCeEEEEeCCC----
Confidence 689999999999999999999999999999888999999999999999999999998744444 489999987642
Q ss_pred ChHHHHHHHhccceeeEEecccchhhHHhhHHhhhh---hcccccccc----------------cccccccchhccCCCC
Q psy14342 81 NPALWLSAVSQYRVRDTFCSYGMLAGIKMSHAAVTS---LCRSMKLAC----------------ELYPSRHIALCLDPYC 141 (316)
Q Consensus 81 ~~~~~~~~~~~~~~t~~~~~~~~~~~l~~~~~~~~~---~~~~~~ls~----------------e~~~~yG~te~~~~~~ 141 (316)
++..+++.++++++++++.+|+++..+......... ..+.+-.++ .+++.||+||++....
T Consensus 246 ~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~lr~i~~gGe~l~~~~~~~~~~~~~~~~~~YG~TE~~~~~~ 325 (517)
T 3r44_A 246 DATKVWSLIVEERVCIGGAVPAILNFMRQVPEFAELDAPDFRYFITGGAPMPEALIKIYAAKNIEVVQGYALTESCGGGT 325 (517)
T ss_dssp CHHHHHHHHHHTTCCEEEECHHHHHHHHHSHHHHHCCCTTCCEEEECSSCCCHHHHHHHHHTTCEEEEEEECGGGTTCEE
T ss_pred CHHHHHHHHHHhCCeEEEeHHHHHHHHHhCcccccCCCCcccEEEECCCCCCHHHHHHHHhcCCcEEEeeccccccccee
Confidence 688999999999999999999988766554332111 111122222 2888999999975432
Q ss_pred CCCceEEEEeeeccCcccccCCCce-EEecCc----------eEEecC---CCcccCCCcCCC----------Cceeeec
Q psy14342 142 GLGFALWVLSSVYSGHHSILIPPSE-VEVNPA----------LWLSAV---SQYRVRDTFCSC----------NGALYQG 197 (316)
Q Consensus 142 ~~~~~~~~~~~~~~g~~~~~~~g~~-~i~d~~----------l~v~~~---~gY~~~~~~~~~----------d~g~~~~ 197 (316)
...+. ......++.+.++++.+ .+.|++ |+++|+ .|||++++.+.. |.|++++
T Consensus 326 ~~~~~---~~~~~~~~~G~~~~~~~~~i~d~~~~~~~~g~GEl~v~g~~v~~GY~~~p~~t~~~f~~g~~~TGDl~~~~~ 402 (517)
T 3r44_A 326 LLLSE---DALRKAGSAGRATMFTDVAVRGDDGVIREHGEGEVVIKSDILLKEYWNRPEATRDAFDNGWFRTGDIGEIDD 402 (517)
T ss_dssp EECGG---GTTTTTTCCBEECTTEEEEEECTTSCEESSEEEEEEEEETTSCSEETTCHHHHHHTEETTEEEEEEEEEECT
T ss_pred ecCCc---cccccCCCCCcCCCCeEEEEECCCCCCCCCCCeEEEEeCcchhhhhCCChhhhHhhhcCCCEecceeEEEcC
Confidence 11110 00112234556889999 777753 999999 999999876543 6666654
Q ss_pred -Cc---CCcccceeEECCcccChHhHHHHHHHhccccceeEEEeeC-----CcEEEEEEecCCchhhcchHHHHHHHHHH
Q psy14342 198 -AE---RLALDETIMLRGMRYHPIDIENSVMRAHKKIAECAVFTWT-----NLLVVVVELDGNESEALDLVPLVTNAVLE 268 (316)
Q Consensus 198 -g~---~GR~dd~i~~~G~~v~p~eIE~~l~~~~p~v~~~~v~~~~-----~~~~~~v~~~~~~~~~~~l~~~~~~~l~~ 268 (316)
|. +||.||+||++|+||+|.|||++|.+ ||+|.+|+|++.. +.+++++.......+.+++.+++++.+.
T Consensus 403 dG~l~~~GR~dd~ik~~G~~v~p~eIE~~l~~-~p~V~~~~Vv~~~~~~~g~~~~a~v~~~~~~~~~~~l~~~l~~~L~- 480 (517)
T 3r44_A 403 EGYLYIKDRLKDMIISGGENVYPAEIESVIIG-VPGVSEVAVIGLPDEKWGEIAAAIVVADQNEVSEQQIVEYCGTRLA- 480 (517)
T ss_dssp TSCEEEEECGGGCEEETTEEECHHHHHHHHTT-STTEEEEEEEEEEETTTEEEEEEEEEECTTTCCHHHHHHHHHHHSC-
T ss_pred CeeEEEecCCcCEEEECCEEECHHHHHHHHHh-CCCEeEEEEEeccccccCceEEEEEECCCCCCCHHHHHHHHHHhCC-
Confidence 43 99999999999999999999999999 9999999999883 2355555333333445678888887776
Q ss_pred hcCeeecEEEEEcCCCcccCCCchhhHHHHHHHHHc
Q psy14342 269 EHHLIVGVAVVVDPGVVPINSRGEKQRMHLRDGFLA 304 (316)
Q Consensus 269 ~~~~~~~~~~~~~~~~lP~t~~gKi~r~~l~~~~~~ 304 (316)
.+..| ..+.+++ +||+|++||++|++|++.|.+
T Consensus 481 ~~~~P-~~i~~v~--~lP~t~~GKi~R~~L~~~~~~ 513 (517)
T 3r44_A 481 RYKLP-KKVIFAE--AIPRNPTGKILKTVLREQYSA 513 (517)
T ss_dssp GGGSC-SEEEECS--CCCBCTTCCBCHHHHHHHHGG
T ss_pred CCCCC-CEEEEEC--CCCCCCCcCccHHHHHHHHHh
Confidence 45554 4566655 899999999999999999986
|
| >4fuq_A Malonyl COA synthetase; ANL superfamily, methylma malonate, ligase; HET: MSE; 1.70A {Rhodopseudomonas palustris} PDB: 4fut_A* 4gxr_A* 4gxq_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.4e-44 Score=339.56 Aligned_cols=288 Identities=15% Similarity=0.124 Sum_probs=218.7
Q ss_pred CeEEEEeccCCCCCceEEEEeHHHHHHHHHHHHHHhcCCCCCceEEecCCcCChhhhHHHHhhhhcCceeeeeCCccccc
Q psy14342 1 MLAYLDFSVSTTGMLAGIKMSHAAVTSLCRSMKLACELYPSRHIALCLDPYCGLGFALWVLSSVYSGHHSILIPPSEVEV 80 (316)
Q Consensus 1 ~~a~i~~TSGTTG~PK~V~~t~~~l~~~~~~~~~~~~~~~~d~~l~~~p~~h~~g~~~~~~~~l~~G~~~v~~~~~~~~~ 80 (316)
|+++|+|||||||.||||+++|+++...+......+++.++|+++.++|++|.+|+...++.+++.|+++++.+..
T Consensus 156 d~a~i~~TSGTTG~PKgV~~sh~~l~~~~~~~~~~~~~~~~d~~~~~~p~~~~~g~~~~~~~~l~~g~~~~~~~~~---- 231 (503)
T 4fuq_A 156 DLAAILYTSGTTGRSKGAMLSHDNLASNSLTLVDYWRFTPDDVLIHALPIYHTHGLFVASNVTLFARGSMIFLPKF---- 231 (503)
T ss_dssp SEEEEEECC--CCSCCEEEEEHHHHHHHHHHHHHHTTCCTTCEEEECSCSSSHCCCCCCHHHHHHTTCEEEECSSC----
T ss_pred CeEEEEECCCcccCCeEEEEeHHHHHHHHHHHHHHhCCCCCCEEEEeCChHHHHHHHHHHHHHHHhCCEEEEcCCC----
Confidence 6899999999999999999999999999999999999999999999999999999877678899999999987642
Q ss_pred ChHHHHHHHhccceeeEEecccchhhHHhhHHhhhhh---cccccccc-----------------cccccccchhccCCC
Q psy14342 81 NPALWLSAVSQYRVRDTFCSYGMLAGIKMSHAAVTSL---CRSMKLAC-----------------ELYPSRHIALCLDPY 140 (316)
Q Consensus 81 ~~~~~~~~~~~~~~t~~~~~~~~~~~l~~~~~~~~~~---~~~~~ls~-----------------e~~~~yG~te~~~~~ 140 (316)
+|..+++.++ ++++++.+|+++..+.......... .+.+-.++ .+++.||+||++...
T Consensus 232 ~~~~~~~~i~--~~t~~~~~P~~~~~l~~~~~~~~~~~~~lr~~~~gg~~l~~~~~~~~~~~~~~~~~~~YG~TE~~~~~ 309 (503)
T 4fuq_A 232 DPDKILDLMA--RATVLMGVPTFYTRLLQSPRLTKETTGHMRLFISGSAPLLADTHREWSAKTGHAVLERYGMTETNMNT 309 (503)
T ss_dssp CHHHHHHHHT--TCCEEEECHHHHHHHHTCTTCSTTTTTTCCEEEECSSCCCHHHHHHHHHHHSCCEEECCEETTTEECB
T ss_pred CHHHHHHHHh--hcCEEEEHHHHHHHHHhCCCccccchhhcEEEEECCCCCCHHHHHHHHHHhCCCccceEcccccCccc
Confidence 6889999998 7898999999887665433221110 11111112 278899999987543
Q ss_pred CCCCceEEEEeeeccCcccccCCCce-EEecCc------------eEEecC---CCcccCCCcCCC-----------Cce
Q psy14342 141 CGLGFALWVLSSVYSGHHSILIPPSE-VEVNPA------------LWLSAV---SQYRVRDTFCSC-----------NGA 193 (316)
Q Consensus 141 ~~~~~~~~~~~~~~~g~~~~~~~g~~-~i~d~~------------l~v~~~---~gY~~~~~~~~~-----------d~g 193 (316)
..... .....++.|.++||++ +++|++ |+++|+ .|||++++.+.. |.|
T Consensus 310 ~~~~~-----~~~~~~~~G~p~~~~~~~i~d~~~g~~~~~g~~GEl~v~g~~v~~GY~~~~~~t~~~f~~~g~~~TGDl~ 384 (503)
T 4fuq_A 310 SNPYD-----GDRVPGAVGPALPGVSARVTDPETGKELPRGDIGMIEVKGPNVFKGYWRMPEKTKSEFRDDGFFITGDLG 384 (503)
T ss_dssp CCCSS-----SCCCTTEEEEBCTTCEEEEECTTTCCBCCTTCCEEEEEESTTSCCCBTTCHHHHHHTBCTTSCEEEEEEE
T ss_pred ccCCC-----CCCcCCccccCCCCeEEEEEECCCCCCCcCCCceEEEEECCchhhhhcCChhhhHhhhCCCCCeEcceeE
Confidence 21111 1112234555899999 988842 999999 999998776532 555
Q ss_pred eeec-Cc---CCcccceeEECCcccChHhHHHHHHHhccccceeEEEeeC-----CcEEEEEEecCCc-hhhcchHHHHH
Q psy14342 194 LYQG-AE---RLALDETIMLRGMRYHPIDIENSVMRAHKKIAECAVFTWT-----NLLVVVVELDGNE-SEALDLVPLVT 263 (316)
Q Consensus 194 ~~~~-g~---~GR~dd~i~~~G~~v~p~eIE~~l~~~~p~v~~~~v~~~~-----~~~~~~v~~~~~~-~~~~~l~~~~~ 263 (316)
++++ |. +||.||+||++|+||+|.|||++|.+ ||+|.+|+|++.. +.++++++..+.. .+.+++.+.++
T Consensus 385 ~~~~dG~l~~~GR~dd~ik~~G~~v~p~eIE~~l~~-~p~V~~a~vv~~~~~~~~~~~~a~v~~~~~~~~~~~~l~~~l~ 463 (503)
T 4fuq_A 385 KIDERGYVHILGRGKDLVITGGFNVYPKEIESEIDA-MPGVVESAVIGVPHADFGEGVTAVVVRDKGATIDEAQVLHGLD 463 (503)
T ss_dssp EECTTCEEEECCSSTTCEEETTEEECHHHHHHHHHT-STTEEEEEEEEEEETTTEEEEEEEEEECTTCCCCHHHHHHHHB
T ss_pred EEcCCCcEEEEecCCCEEEECCEEECHHHHHHHHHh-CCCeeEEEEEEeEchhcCceeEEEEEeCCCCCCCHHHHHHHHH
Confidence 5544 43 99999999999999999999999999 9999999999883 3566777665532 33456666666
Q ss_pred HHHHHhcCeeecEEEEEcCCCcccCCCchhhHHHHHHHHHc
Q psy14342 264 NAVLEEHHLIVGVAVVVDPGVVPINSRGEKQRMHLRDGFLA 304 (316)
Q Consensus 264 ~~l~~~~~~~~~~~~~~~~~~lP~t~~gKi~r~~l~~~~~~ 304 (316)
+.+. .+..| ..+.+++ +||+|++||++|++|++.|.+
T Consensus 464 ~~L~-~~~~P-~~i~~v~--~lP~t~~GKi~R~~L~~~~~~ 500 (503)
T 4fuq_A 464 GQLA-KFKMP-KKVIFVD--DLPRNTMGKVQKNVLRETYKD 500 (503)
T ss_dssp TTBC-GGGCC-SEEEEES--CCCBCTTSCBCHHHHHHHTTT
T ss_pred hhcc-cCCCC-CEEEEEC--CCCCCcccceeHHHHHHHHHH
Confidence 6665 44444 4677776 899999999999999998865
|
| >3fce_A D-alanine--poly(phosphoribitol) ligase subunit 1; DLTA, AMP-forming domain, adenylation, D-alanine protein ligase, ATP complex; HET: ATP; 1.90A {Bacillus cereus} PDB: 3fcc_A* 3dhv_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.7e-44 Score=339.80 Aligned_cols=301 Identities=13% Similarity=0.089 Sum_probs=217.5
Q ss_pred CeEEEEeccCCCCCceEEEEeHHHHHHHHHHHHHHhcCCCCCceEEecCCcCChhhhHHHHhhhhcCceeeeeCCccccc
Q psy14342 1 MLAYLDFSVSTTGMLAGIKMSHAAVTSLCRSMKLACELYPSRHIALCLDPYCGLGFALWVLSSVYSGHHSILIPPSEVEV 80 (316)
Q Consensus 1 ~~a~i~~TSGTTG~PK~V~~t~~~l~~~~~~~~~~~~~~~~d~~l~~~p~~h~~g~~~~~~~~l~~G~~~v~~~~~~~~~ 80 (316)
|+++|+|||||||.||||++||+++...+......+++.++|+++.++|++|+++++. ++.++..|+++++.++. ...
T Consensus 145 d~a~i~~TSGTTG~PKgv~~th~~l~~~~~~~~~~~~~~~~d~~l~~~p~~~~~~~~~-~~~~l~~G~~~~~~~~~-~~~ 222 (512)
T 3fce_A 145 ENFYIIYTSGSTGNPKGVQITYNCLVSFTKWAVEDFNLQTGQVFLNQAPFSFDLSVMD-IYPSLVTGGTLWAIDKD-MIA 222 (512)
T ss_dssp SEEEEEEECC----CEEEEEEHHHHHHHHHHHHHHTTCCSSCEEEECSCTTSGGGHHH-HHHHHHTTCEEEECCHH-HHH
T ss_pred CeEEEEECCCCCCCCceEEEehHHHHHHHHHHHHhcCCCCCCEEEEeCCccHhHHHHH-HHHHHhCCCEEEECCHH-Hhh
Confidence 6899999999999999999999999999988888999999999999999999999876 89999999999998653 235
Q ss_pred ChHHHHHHHhccceeeEEecccchhhHHhhHHhhhh---hcccccccc------------------cccccccchhccCC
Q psy14342 81 NPALWLSAVSQYRVRDTFCSYGMLAGIKMSHAAVTS---LCRSMKLAC------------------ELYPSRHIALCLDP 139 (316)
Q Consensus 81 ~~~~~~~~~~~~~~t~~~~~~~~~~~l~~~~~~~~~---~~~~~~ls~------------------e~~~~yG~te~~~~ 139 (316)
+|..+++.++++++++++.+|+++..+......... ..+.+-.++ .+++.||+||++..
T Consensus 223 ~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~lr~~~~~G~~l~~~~~~~~~~~~~~~~i~~~YG~TE~~~~ 302 (512)
T 3fce_A 223 RPKDLFASLEQSDIQVWTSTPSFAEMCLMEASFSESMLPNMKTFLFCGEVLPNEVARKLIERFPKATIMNTYGPTEATVA 302 (512)
T ss_dssp SHHHHHHHHHHHCCCEEEECHHHHHHHTTSTTCSTTTSTTCCEEEECSSCCCHHHHHHHHHHCTTCEEEEEECCGGGSSC
T ss_pred CHHHHHHHHHHcCCcEEEecHHHHHHHHhhccccchhCccccEEEEecCcCCHHHHHHHHHHCCCCEEEeCcccChhhhh
Confidence 788999999999999999999988655433221110 011111222 27889999999754
Q ss_pred CCCCCceEEEEeeeccCcccccCCCce-EEecCc-----------eEEecC---CCcccCCCcCCC--------------
Q psy14342 140 YCGLGFALWVLSSVYSGHHSILIPPSE-VEVNPA-----------LWLSAV---SQYRVRDTFCSC-------------- 190 (316)
Q Consensus 140 ~~~~~~~~~~~~~~~~g~~~~~~~g~~-~i~d~~-----------l~v~~~---~gY~~~~~~~~~-------------- 190 (316)
................++.|.++++.+ +++|++ |+++|+ .|||++++.+..
T Consensus 303 ~~~~~~~~~~~~~~~~~~~G~~~~~~~~~i~d~~g~~~~~g~~GEl~v~g~~v~~GY~~~~~~t~~~f~~~~~~~~~~TG 382 (512)
T 3fce_A 303 VTGIHVTEEVLDQYKSLPVGYCKSDCRLLIMKEDGTIAPDGEKGEIVIVGPSVSVGYLGSPELTEKAFTMIDGERAYKTG 382 (512)
T ss_dssp SEEEECCHHHHHHCSSCCCEEECTTCEEEEECSSSCBCCTTSCEEEEEESTTSCSCBTTCHHHHHHHEEEETTEEEEEEE
T ss_pred eeeEEeccccccccCCCccccccCCcEEEEECCCCCCCCCCCeEEEEEeccccChhhcCCchhhhhccccCCCCEEEeCC
Confidence 321110000000011224556899999 887754 999999 999998765432
Q ss_pred CceeeecCc---CCcccceeEECCcccChHhHHHHHHHhccccceeEEEeeC-----CcEEEEEEecCCchh-hcchHHH
Q psy14342 191 NGALYQGAE---RLALDETIMLRGMRYHPIDIENSVMRAHKKIAECAVFTWT-----NLLVVVVELDGNESE-ALDLVPL 261 (316)
Q Consensus 191 d~g~~~~g~---~GR~dd~i~~~G~~v~p~eIE~~l~~~~p~v~~~~v~~~~-----~~~~~~v~~~~~~~~-~~~l~~~ 261 (316)
|.|++++|. +||.||+||++|++|+|.|||++|.+ ||.|.+|+|++.. +.+++++++...... ..++.+.
T Consensus 383 Dlg~~~dG~l~i~GR~~d~ik~~G~~v~p~eIE~~l~~-~p~V~~a~vv~~~~~~~~~~~~a~vv~~~~~~~~~~~~~~~ 461 (512)
T 3fce_A 383 DAGYVENGLLFYNGRLDFQIKLHGYRMELEEIEHHLRA-CSYVEGAVIVPIKKGEKYDYLLAVVVPGEHSFEKEFKLTSA 461 (512)
T ss_dssp EEEEEETTEEEEEEEGGGCEEETTEEECHHHHHHHHHH-STTEEEEEEEEEEETTEEEEEEEEEEECSCCCSSHHHHHHH
T ss_pred ceEEecCCEEEEecccCCEEEECCEEECHHHHHHHHHh-CCCcceEEEEEEecCCCceEEEEEEecCCccccchhhhHHH
Confidence 556565554 99999999999999999999999999 9999999999873 346666666554322 2244555
Q ss_pred HHHHHHHhcCe--eecEEEEEcCCCcccCCCchhhHHHHHHHHHcCC
Q psy14342 262 VTNAVLEEHHL--IVGVAVVVDPGVVPINSRGEKQRMHLRDGFLADQ 306 (316)
Q Consensus 262 ~~~~l~~~~~~--~~~~~~~~~~~~lP~t~~gKi~r~~l~~~~~~~~ 306 (316)
+++.+.+.... .+..+.++ ++||+|++||++|++|++.+.+..
T Consensus 462 l~~~l~~~L~~~~~P~~~~~~--~~lP~t~~GKi~R~~L~~~~~~~~ 506 (512)
T 3fce_A 462 IKKELNERLPNYMIPRKFMYQ--SSIPMTPNGKVDRKKLLSEVTALE 506 (512)
T ss_dssp HHHHHHTTSCGGGSCSEEEEC--SCCCBCTTSSBCHHHHHHHHHC--
T ss_pred HHHHHHhhCchhcCCeEEEEe--cccCCCCCcChHHHHHHhhhhhcc
Confidence 66665544322 22344444 599999999999999999998743
|
| >3ipl_A 2-succinylbenzoate--COA ligase; structural genomics, acyl-protein synthetase, PSI-2, protein structure initiative; 2.30A {Staphylococcus aureus subsp} | Back alignment and structure |
|---|
Probab=100.00 E-value=4.4e-44 Score=336.06 Aligned_cols=290 Identities=13% Similarity=0.094 Sum_probs=208.2
Q ss_pred CeEEEEeccCCCCCceEEEEeHHHHHHHHHHHHHHhcCCCCCceEEecCCcCChhhhHHHHhhhhcCceeeeeCCccccc
Q psy14342 1 MLAYLDFSVSTTGMLAGIKMSHAAVTSLCRSMKLACELYPSRHIALCLDPYCGLGFALWVLSSVYSGHHSILIPPSEVEV 80 (316)
Q Consensus 1 ~~a~i~~TSGTTG~PK~V~~t~~~l~~~~~~~~~~~~~~~~d~~l~~~p~~h~~g~~~~~~~~l~~G~~~v~~~~~~~~~ 80 (316)
|+++|+|||||||.||||++||+++...+......+++.++|+++.++|++|.+|+.. ++.++..|+++++.++.
T Consensus 164 d~a~i~~TSGTTG~PKgv~~th~~~~~~~~~~~~~~~~~~~d~~l~~~p~~~~~g~~~-~~~~l~~G~~~~~~~~~---- 238 (501)
T 3ipl_A 164 DIASIMFTSGTTGPQKAVPQTFRNHYASAIGCKESLGFDRDTNWLSVLPIYHISGLSV-LLRAVIEGFTVRIVDKF---- 238 (501)
T ss_dssp SEEEEEECCTTTSCCCEEEEEHHHHHHHHHHHHHHTCCCTTCEEEECSCTTSHHHHHH-HHHHHHHTCEEEECSSC----
T ss_pred CeEEEEECCCCCCCCcEEEEeHHHHHHHHHHHHHhhCCCccCEEEEeCcHHHHHHHHH-HHHHHHcCceEEeCCCC----
Confidence 6899999999999999999999999999998899999999999999999999999987 88999999999998643
Q ss_pred ChHHHHHHHhccceeeEEecccchhhHHhhHHhhhhhcccccccc----------------cccccccchhccCCCCCCC
Q psy14342 81 NPALWLSAVSQYRVRDTFCSYGMLAGIKMSHAAVTSLCRSMKLAC----------------ELYPSRHIALCLDPYCGLG 144 (316)
Q Consensus 81 ~~~~~~~~~~~~~~t~~~~~~~~~~~l~~~~~~~~~~~~~~~ls~----------------e~~~~yG~te~~~~~~~~~ 144 (316)
+|..+++.++++++|+++.+|+++..+...........+.+..++ .+++.||+||++.......
T Consensus 239 ~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~lr~i~~gG~~l~~~~~~~~~~~~~~~~~~YG~TE~~~~~~~~~ 318 (501)
T 3ipl_A 239 NAEQILTMIKNERITHISLVPQTLNWLMQQGLHEPYNLQKILLGGAKLSATMIETALQYNLPIYNSFGMTETCSQFLTAT 318 (501)
T ss_dssp CHHHHHHHHHHSCCCEEEECHHHHHHHHHHTCCSCTTCCEEEECSSCCCHHHHHHHHHTTCCEEEEEEEGGGTEEEEEEC
T ss_pred CHHHHHHHHHHcCCcEEEchHHHHHHHHhcCCCCcCcccEEEEeCCCCCHHHHHHHHHhCCCEeccccccccccceeecC
Confidence 688999999999999999999988766543322111112222222 2888999999864322111
Q ss_pred ceEEEEeeeccCcccccCCCce-EEecCc------eEEecC---CCcccCCCcCCC---------Cceeeec-Cc---CC
Q psy14342 145 FALWVLSSVYSGHHSILIPPSE-VEVNPA------LWLSAV---SQYRVRDTFCSC---------NGALYQG-AE---RL 201 (316)
Q Consensus 145 ~~~~~~~~~~~g~~~~~~~g~~-~i~d~~------l~v~~~---~gY~~~~~~~~~---------d~g~~~~-g~---~G 201 (316)
+. ......++.|.|++|++ +++|++ |+++|+ .|||++++.+.. |.|++++ |. .|
T Consensus 319 ~~---~~~~~~~~~G~p~~~~~~~i~d~~~~~~GEl~v~g~~~~~gY~~~~~~t~~~~~g~~~TGDl~~~~~~G~l~~~G 395 (501)
T 3ipl_A 319 PE---MLHARPDTVGMPSANVDVKIKNPNKEGHGELMIKGANVMNGYLYPTDLTGTFENGYFNTGDIAEIDHEGYVMIYD 395 (501)
T ss_dssp HH---HHHHCTTCCBEECTTCEEEEESCCSSCCEEEEEESTTSCSCCSBSTTCCCSEETTEEEEEEEEEECTTSCEEEEE
T ss_pred cc---ccccCCCCCCCCCCCcEEEEecCCCCCccEEEEeccchhhhhCcChhhcchhcCCceecCCEEEEcCCCeEEEEc
Confidence 10 00012234556899999 888863 999999 899999887653 5666643 43 99
Q ss_pred cccceeEECCcccChHhHHHHHHHhccccceeEEEeeC-----CcEEEEEEecCCchhhcchHHHHHHHHHHhcCeeecE
Q psy14342 202 ALDETIMLRGMRYHPIDIENSVMRAHKKIAECAVFTWT-----NLLVVVVELDGNESEALDLVPLVTNAVLEEHHLIVGV 276 (316)
Q Consensus 202 R~dd~i~~~G~~v~p~eIE~~l~~~~p~v~~~~v~~~~-----~~~~~~v~~~~~~~~~~~l~~~~~~~l~~~~~~~~~~ 276 (316)
|.||+||++|++|+|.|||++|.+ ||+|.+|+|++.. +.++++++.. ...+.+++.+.+++.+. .+..| ..
T Consensus 396 R~dd~ik~~G~~v~p~eiE~~l~~-~p~V~~~~vv~~~~~~~g~~~~a~v~~~-~~~~~~~l~~~l~~~L~-~~~~P-~~ 471 (501)
T 3ipl_A 396 RRKDLIISGGENIYPYQIETVAKQ-FPGISDAVCVGHPDDTWGQVPKLYFVSE-SDISKAQLIAYLSKHLA-KYKVP-KH 471 (501)
T ss_dssp ECCCCEECSSCEECHHHHHHHHTT-STTEEEEEEEEEEETTTEEEEEEEEEES-SCCCHHHHHHHHHHHSC-GGGSC-SE
T ss_pred cccceEEECCEEECHHHHHHHHHh-CCCccEEEEEEEecccCCceEEEEEEeC-CCCCHHHHHHHHHhhCc-cccCC-CE
Confidence 999999999999999999999999 9999999999883 2455555543 33455678888887776 45454 45
Q ss_pred EEEEcCCCcccCCCchhhHHHHHHHHHc
Q psy14342 277 AVVVDPGVVPINSRGEKQRMHLRDGFLA 304 (316)
Q Consensus 277 ~~~~~~~~lP~t~~gKi~r~~l~~~~~~ 304 (316)
+.+++ +||+|++||++|++|++....
T Consensus 472 i~~v~--~lP~t~~GKi~R~~l~~~~~~ 497 (501)
T 3ipl_A 472 FEKVD--TLPYTSTGKLQRNKLYREGHH 497 (501)
T ss_dssp EEECS--SCC------------------
T ss_pred EEEec--ccCCCCCCCEeHHHHhhcccc
Confidence 55655 999999999999999988765
|
| >3ni2_A 4-coumarate:COA ligase; 4CL, phenylpropanoid biosynthesis; HET: AYL EPE; 1.90A {Populus tomentosa} PDB: 3a9v_A* 3a9u_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=9.9e-45 Score=343.13 Aligned_cols=294 Identities=15% Similarity=0.157 Sum_probs=216.2
Q ss_pred CeEEEEeccCCCCCceEEEEeHHHHHHHHHHHHH----HhcCCCCCceEEecCCcCChhhhHHHHhhhhcCceeeeeCCc
Q psy14342 1 MLAYLDFSVSTTGMLAGIKMSHAAVTSLCRSMKL----ACELYPSRHIALCLDPYCGLGFALWVLSSVYSGHHSILIPPS 76 (316)
Q Consensus 1 ~~a~i~~TSGTTG~PK~V~~t~~~l~~~~~~~~~----~~~~~~~d~~l~~~p~~h~~g~~~~~~~~l~~G~~~v~~~~~ 76 (316)
|+++|+|||||||.||||++||+++...+..... .+++.++|+++.++|++|.+|+...++.++..|+++++.+..
T Consensus 179 d~a~i~~TSGTTG~PKgv~~th~~l~~~~~~~~~~~~~~~~~~~~d~~l~~~p~~h~~~~~~~~~~~l~~G~~~v~~~~~ 258 (536)
T 3ni2_A 179 DVVALPYSSGTTGLPKGVMLTHKGLITSVAQQVDGDNPNLYFHSEDVILCVLPMFHIYALNSIMLCGLRVGAPILIMPKF 258 (536)
T ss_dssp SEEECCEECTTSSSCEEEEEEHHHHHHHHHHHHCSSSCSSCCCTTCCEEECSCTTSHHHHHHTHHHHHHHTCCEEECSSC
T ss_pred CEEEEEcCCCccccchHHHhhHHHHHHHHHHHHhhccccccCCCCCEEEEecChHHHHHHHHHHHHHHhcCCEEEEcCCC
Confidence 6899999999999999999999999887665543 345778999999999999999987789999999999998643
Q ss_pred ccccChHHHHHHHhccceeeEEecccchhhHHhhHHhhhh---hcccccccc------------------cccccccchh
Q psy14342 77 EVEVNPALWLSAVSQYRVRDTFCSYGMLAGIKMSHAAVTS---LCRSMKLAC------------------ELYPSRHIAL 135 (316)
Q Consensus 77 ~~~~~~~~~~~~~~~~~~t~~~~~~~~~~~l~~~~~~~~~---~~~~~~ls~------------------e~~~~yG~te 135 (316)
++..+++.++++++++++.+|+++..+......... ..+.+-.++ .+++.||+||
T Consensus 259 ----~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~l~~lr~i~~gGe~l~~~~~~~~~~~~~~~~l~~~YG~TE 334 (536)
T 3ni2_A 259 ----EIGSLLGLIEKYKVSIAPVVPPVMMSIAKSPDLDKHDLSSLRMIKSGGAPLGKELEDTVRAKFPQARLGQGYGMTE 334 (536)
T ss_dssp ----CHHHHHHHHHHHTCCEEEECHHHHHHHHTCSCGGGSCCTTCCEEEEESSCCCHHHHHHHHHHCTTSEEEEEEECGG
T ss_pred ----CHHHHHHHHHHhCCeEEEccHHHHHHHHhCcccccCCCccceEEEECCCCCCHHHHHHHHHHCCCCCccccccccc
Confidence 688999999999999999999988766543321110 011111122 2778999999
Q ss_pred ccCCCCCCCceEEEEeeeccCcccccCCCce-EEecCc------------eEEecC---CCcccCCCcCCC---------
Q psy14342 136 CLDPYCGLGFALWVLSSVYSGHHSILIPPSE-VEVNPA------------LWLSAV---SQYRVRDTFCSC--------- 190 (316)
Q Consensus 136 ~~~~~~~~~~~~~~~~~~~~g~~~~~~~g~~-~i~d~~------------l~v~~~---~gY~~~~~~~~~--------- 190 (316)
++..................++.|.+++|++ +++|++ |+++|+ .|||++++.+..
T Consensus 335 ~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~i~d~~~~~~~~~g~~GEl~v~g~~v~~GY~~~p~~t~~~~~~~g~~~ 414 (536)
T 3ni2_A 335 AGPVLAMCLAFAKEPFDIKPGACGTVVRNAEMKIVDPETGASLPRNQPGEICIRGDQIMKGYLNDPEATSRTIDKEGWLH 414 (536)
T ss_dssp GSSEEEECGGGSSSCCCCCTTCCCEECSSCEEEEECTTTCCBCCTTCCEEEEEESTTSCSEETTCHHHHHHHBCTTSCEE
T ss_pred cchhhhcccccCCccccCCCCCeeEeCCCcEEEEEeCCCCcCCCCCCccEEEEeCcccchhhcCChhHHHhhccCCCceE
Confidence 9753221100000001122344566899999 888843 999999 899999766532
Q ss_pred --Cceeeec-Cc---CCcccceeEECCcccChHhHHHHHHHhccccceeEEEeeC-----CcEEEEEEecCCc-hhhcch
Q psy14342 191 --NGALYQG-AE---RLALDETIMLRGMRYHPIDIENSVMRAHKKIAECAVFTWT-----NLLVVVVELDGNE-SEALDL 258 (316)
Q Consensus 191 --d~g~~~~-g~---~GR~dd~i~~~G~~v~p~eIE~~l~~~~p~v~~~~v~~~~-----~~~~~~v~~~~~~-~~~~~l 258 (316)
|.|++++ |. +||.||+||++|+||+|.|||++|.+ ||.|.+|+|++.. +.++++++..+.. .+.+++
T Consensus 415 TGDl~~~~~dG~l~~~GR~dd~ik~~G~~v~p~eIE~~l~~-~p~V~~a~Vv~~~~~~~g~~~~a~vv~~~~~~~~~~~l 493 (536)
T 3ni2_A 415 TGDIGYIDDDDELFIVDRLKELIKYKGFQVAPAELEALLIA-HPEISDAAVVGLKDEDAGEVPVAFVVKSEKSQATEDEI 493 (536)
T ss_dssp EEEEEEECTTSCEEEEEECSCCEEETTEEECHHHHHHHHHT-STTEEEEEEEEEEETTTEEEEEEEEEECTTCCCCHHHH
T ss_pred cccEEEEcCCceEEEEecccceEEECCEEECHHHHHHHHHh-CCCcceEEEEeeecCCCCceeEEEEEecCCCCCCHHHH
Confidence 5555544 43 99999999999999999999999999 9999999999873 3466666655432 234566
Q ss_pred HHHHHHHHHHhcCeeecEEEEEcCCCcccCCCchhhHHHHHHHHH
Q psy14342 259 VPLVTNAVLEEHHLIVGVAVVVDPGVVPINSRGEKQRMHLRDGFL 303 (316)
Q Consensus 259 ~~~~~~~l~~~~~~~~~~~~~~~~~~lP~t~~gKi~r~~l~~~~~ 303 (316)
.+.+++.+. .+..| ..+.+++ +||+|++||++|++|++.++
T Consensus 494 ~~~l~~~l~-~~~~p-~~i~~v~--~lP~t~~GKi~R~~L~~~~~ 534 (536)
T 3ni2_A 494 KQYISKQVI-FYKRI-KRVFFIE--AIPKAPSGKILRKNLKEKLA 534 (536)
T ss_dssp HHHHHTTSC-GGGCC-SEEEECS--CCCBCTTSCBCHHHHHTC--
T ss_pred HHHHHHhcc-CCccc-cEEEEEe--cCCCCCCCCeeHHHHHHHhc
Confidence 666666655 34444 3556655 89999999999999998775
|
| >2d1s_A Luciferase, luciferin 4-monooxygenase; alpha/beta, beta barrel, alpha+beta, riken structural genomics/proteomics initiative, RSGI; HET: SLU; 1.30A {Luciola cruciata} PDB: 2d1q_A* 2d1r_A* 2d1t_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=4.4e-44 Score=339.50 Aligned_cols=290 Identities=14% Similarity=0.166 Sum_probs=218.8
Q ss_pred CeEEEEeccCCCCCceEEEEeHHHHHHHHHHHHHH---hcCCCCCceEEecCCcCChhhhHHHHhhhhcCceeeeeCCcc
Q psy14342 1 MLAYLDFSVSTTGMLAGIKMSHAAVTSLCRSMKLA---CELYPSRHIALCLDPYCGLGFALWVLSSVYSGHHSILIPPSE 77 (316)
Q Consensus 1 ~~a~i~~TSGTTG~PK~V~~t~~~l~~~~~~~~~~---~~~~~~d~~l~~~p~~h~~g~~~~~~~~l~~G~~~v~~~~~~ 77 (316)
|+++|+|||||||.||||++||+++...+...... +++.++|+++.++|++|++|+...++.++ .|+++++.+..
T Consensus 193 d~a~i~~TSGTTG~PKgv~~sh~~~~~~~~~~~~~~~~~~~~~~d~~l~~~p~~h~~g~~~~~~~~l-~G~~~v~~~~~- 270 (548)
T 2d1s_A 193 QVALIMNSSGSTGLPKGVQLTHENIVTRFSHARDPIYGNQVSPGTAVLTVVPFHHGFGMFTTLGYLI-CGFRVVMLTKF- 270 (548)
T ss_dssp CEEEEECCSSCSSSCCCEEEEHHHHHHHHHHHTCTTTSCCCCTTCEEEECSCTTSHHHHHHHHHHHH-TTCEEEECCCC-
T ss_pred CEEEEEeCCCCCCCCCEEEecHHHHHHHHHHhhchhhccCCCccceEEEeccHHHHHHHHHHHHHHh-cCcEEEEcCCC-
Confidence 57999999999999999999999999887776665 67888999999999999999887667777 99999987632
Q ss_pred cccChHHHHHHHhccceeeEEecccchhhHHhhHHhhh---hhcccccccc------------------cccccccchhc
Q psy14342 78 VEVNPALWLSAVSQYRVRDTFCSYGMLAGIKMSHAAVT---SLCRSMKLAC------------------ELYPSRHIALC 136 (316)
Q Consensus 78 ~~~~~~~~~~~~~~~~~t~~~~~~~~~~~l~~~~~~~~---~~~~~~~ls~------------------e~~~~yG~te~ 136 (316)
+|..+++.++++++|+++.+|+++..+........ ...+.+-.++ .+++.||+||+
T Consensus 271 ---~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~l~~lr~i~~gG~~l~~~~~~~~~~~~~~~~i~~~YG~TE~ 347 (548)
T 2d1s_A 271 ---DEETFLKTLQDYKCTSVILVPTLFAILNKSELLNKYDLSNLVEIASGGAPLSKEVGEAVARRFNLPGVRQGYGLTET 347 (548)
T ss_dssp ---CHHHHHHHHHHTTEEEEEECHHHHHHHHHCSCGGGSCCTTCCEEEECSSCCCHHHHHHHHHHTTCSCCEEEEECGGG
T ss_pred ---CHHHHHHHHHHcCCcEEEecHHHHHHHHhCcccccccccceeEEEEcCccCCHHHHHHHHHHcCCCceeeccccccc
Confidence 68999999999999999999998876654322110 0011111222 27789999999
Q ss_pred cCCCCCCCceEEEEeeeccCcccccCCCce-EEecCc------------eEEecC---CCcccCCCcCC-----------
Q psy14342 137 LDPYCGLGFALWVLSSVYSGHHSILIPPSE-VEVNPA------------LWLSAV---SQYRVRDTFCS----------- 189 (316)
Q Consensus 137 ~~~~~~~~~~~~~~~~~~~g~~~~~~~g~~-~i~d~~------------l~v~~~---~gY~~~~~~~~----------- 189 (316)
+........ .....++.|.++||++ +++|++ |+++|+ .|||++++.+.
T Consensus 348 ~~~~~~~~~-----~~~~~~~~G~~~~~~~~~i~d~~~~~~~~~g~~GEl~v~g~~v~~GY~~~~~~t~~~f~~~g~~~T 422 (548)
T 2d1s_A 348 TSAIIITPE-----GDDKPGASGKVVPLFKAKVIDLDTKKSLGPNRRGEVCVKGPMLMKGYVNNPEATKELIDEEGWLHT 422 (548)
T ss_dssp SSEEEECCT-----TCCCTTCCBEECTTCEEEEECTTTCCBCCTTCCEEEEEESTTSCSEETTCHHHHHHHBCTTSCEEE
T ss_pred cceeeecCc-----ccCCCCCCCccCCCceEEEEeCCcCccCCCCCCeEEEECCHHHhhhhcCChHHhhhcccCCcEEEc
Confidence 753322111 1112335566899999 888831 999999 89999876542
Q ss_pred CCceeeec-Cc---CCcccceeEECCcccChHhHHHHHHHhccccceeEEEeeC-----CcEEEEEEecCCc-hhhcchH
Q psy14342 190 CNGALYQG-AE---RLALDETIMLRGMRYHPIDIENSVMRAHKKIAECAVFTWT-----NLLVVVVELDGNE-SEALDLV 259 (316)
Q Consensus 190 ~d~g~~~~-g~---~GR~dd~i~~~G~~v~p~eIE~~l~~~~p~v~~~~v~~~~-----~~~~~~v~~~~~~-~~~~~l~ 259 (316)
+|.|++++ |. +||.||+||++|++|+|.|||++|.+ ||.|.+|+|++.. +.+++++++.+.. .+.+++.
T Consensus 423 GDl~~~~~dG~l~~~GR~~d~ik~~G~~v~p~eIE~~l~~-~p~V~~a~V~~~~~~~~g~~~~a~vv~~~~~~~~~~~l~ 501 (548)
T 2d1s_A 423 GDIGYYDEEKHFFIVDRLKSLIKYKGYQVPPAELESVLLQ-HPSIFDAGVAGVPDPVAGELPGAVVVLESGKNMTEKEVM 501 (548)
T ss_dssp EEEEEECTTCCEEEEEEGGGCBCBTTCCBCHHHHHHHHHT-STTEEEEEEEEEEETTTEEEEEEEEEECTTCCCCHHHHH
T ss_pred cCEEEEcCCCeEEEeccccceEEECCEEECHHHHHHHHHh-CCCccEEEEEEEEcCCCCeeeEEEEEEcCCCCCCHHHHH
Confidence 25566654 43 99999999999999999999999999 9999999999983 3566777665432 3345677
Q ss_pred HHHHHHHHHhcCeeecEEEEEcCCCcccCCCchhhHHHHHHHHHc
Q psy14342 260 PLVTNAVLEEHHLIVGVAVVVDPGVVPINSRGEKQRMHLRDGFLA 304 (316)
Q Consensus 260 ~~~~~~l~~~~~~~~~~~~~~~~~~lP~t~~gKi~r~~l~~~~~~ 304 (316)
+++++.+. .+..+...+.+++ +||+|++||++|++|++.+.+
T Consensus 502 ~~~~~~l~-~~~~p~~~i~~v~--~lP~t~~GKi~r~~L~~~~~~ 543 (548)
T 2d1s_A 502 DYVASQVS-NAKRLRGGVRFVD--EVPKGLTGKIDGRAIREILKK 543 (548)
T ss_dssp HHHHTTSC-GGGSCTTCEEECS--SCCBCTTSCBCHHHHHHHHHS
T ss_pred HHHHHhcc-ccccccccEEEcc--CCCCCCcchhHHHHHHHHHhh
Confidence 77766665 3444422566665 899999999999999999875
|
| >3g7s_A Long-chain-fatty-acid--COA ligase (FADD-1); protein structure initiative, PSI-II, NYSGXRC, 11193J, structural genomics; 2.15A {Archaeoglobus fulgidus dsm 4304} | Back alignment and structure |
|---|
Probab=100.00 E-value=4.4e-44 Score=339.61 Aligned_cols=292 Identities=14% Similarity=0.163 Sum_probs=189.6
Q ss_pred CeEEEEeccCCCCCceEEEEeHHHHHHHHHHHHHHhcCCCCCceEEecCCcCChhhhHHHHhhhhcCceeeeeCCccccc
Q psy14342 1 MLAYLDFSVSTTGMLAGIKMSHAAVTSLCRSMKLACELYPSRHIALCLDPYCGLGFALWVLSSVYSGHHSILIPPSEVEV 80 (316)
Q Consensus 1 ~~a~i~~TSGTTG~PK~V~~t~~~l~~~~~~~~~~~~~~~~d~~l~~~p~~h~~g~~~~~~~~l~~G~~~v~~~~~~~~~ 80 (316)
|+|+|+|||||||.||||+++|+++...+......+++.++|+++.++|++|.+++.. ++.++..|+++++.+..
T Consensus 181 d~a~i~~TSGTTG~PKgV~~sh~~l~~~~~~~~~~~~~~~~d~~~~~~p~~~~~~~~~-~~~~l~~G~~~~~~~~~---- 255 (549)
T 3g7s_A 181 DVALIPYTGGTTGMPKGVMLTHFNLAANALQLAVATGLSHMDTIVGCMPMFHSAEFGL-VNLMVTVGNEYVVMGMF---- 255 (549)
T ss_dssp SEEECCEECCCCC-CEEEEEEHHHHHHHHHHHHHHHCCCTTCEEECCSCTTSHHHHHH-HTTHHHHCCEEEEESSC----
T ss_pred CEEEEEECCCccCCCceEEEcHHHHHHHHHHHHHHcCCCCCCEEEEeCcHHHHHHHHH-HHHHHhcCceEEEcCCC----
Confidence 5799999999999999999999999999999889999999999999999999999887 88899999999998632
Q ss_pred ChHHHHHHHhccceeeEEecccchhhHHhhHHhhh--h---hcccccccc------------------------cccccc
Q psy14342 81 NPALWLSAVSQYRVRDTFCSYGMLAGIKMSHAAVT--S---LCRSMKLAC------------------------ELYPSR 131 (316)
Q Consensus 81 ~~~~~~~~~~~~~~t~~~~~~~~~~~l~~~~~~~~--~---~~~~~~ls~------------------------e~~~~y 131 (316)
++..+++.++++++|+++.+|+++..+........ . ..+.+..++ .+++.|
T Consensus 256 ~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~lr~~~~gg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~Y 335 (549)
T 3g7s_A 256 NQEMLAENIEKYKGTFSWAVPPALNVLVNTLESSNKTYDWSYLKVFATGAWPVAPALVEKLLKLAAEKCNNPRLRHNQIW 335 (549)
T ss_dssp CHHHHHHHHHHTTCCEEEECHHHHHHHHHHHHHSCCCCCCTTCCEEEEESSCCCHHHHHHHHHHHHHHSSCTTCEEEEEE
T ss_pred CHHHHHHHHHHhCCeEEEeCCHHHHHHHhhhhhhcccCCccceeEEEeCCccCCHHHHHHHHHHHHhhcCCccccccceE
Confidence 68899999999999999999998876655443211 0 011111111 144579
Q ss_pred cchhccCCCCCCCceEEEEeeeccCcccccCCCce-EEecCc------------eEEecC---CCcccCCCcCCC-----
Q psy14342 132 HIALCLDPYCGLGFALWVLSSVYSGHHSILIPPSE-VEVNPA------------LWLSAV---SQYRVRDTFCSC----- 190 (316)
Q Consensus 132 G~te~~~~~~~~~~~~~~~~~~~~g~~~~~~~g~~-~i~d~~------------l~v~~~---~gY~~~~~~~~~----- 190 (316)
|+||++.......+. .....++.|.|++|++ +++|++ |+++|+ .|||++++.+..
T Consensus 336 G~TE~~~~~~~~~~~----~~~~~~~~G~p~~~~~~~i~d~~~g~~~~~g~~GEl~v~g~~v~~GY~~~~~~t~~~f~~~ 411 (549)
T 3g7s_A 336 GMTEACPMVTTNPPL----RLDKSTTQGVPMSDIELKVISLEDGRELGVGESGEIVIRGPNIFKGYWKREKENQECWWYD 411 (549)
T ss_dssp ECGGGSSEEEECCGG----GGGGTTSCCEECTTCEEEEECSSSCCEECTTCCEEEEEESTTSCSEETTCTTGGGTSEEEC
T ss_pred eccccchhhhcCCcc----ccCcCCCccccCCCCEEEEEeCCCCcCCCCCCceEEEEECcchhhhhCCChhhhhhhhhcc
Confidence 999997543322210 1112335566899999 888832 999999 899999877643
Q ss_pred ----------Cceeeec-Cc---CCcccceeEECCcccChHhHHHHHHHhccccceeEEEeeC-----CcEEEEEEecCC
Q psy14342 191 ----------NGALYQG-AE---RLALDETIMLRGMRYHPIDIENSVMRAHKKIAECAVFTWT-----NLLVVVVELDGN 251 (316)
Q Consensus 191 ----------d~g~~~~-g~---~GR~dd~i~~~G~~v~p~eIE~~l~~~~p~v~~~~v~~~~-----~~~~~~v~~~~~ 251 (316)
|.|++++ |. +||.||+||++|++|+|.|||++|.+ ||.|.+|+|++.. +.+++++++.+.
T Consensus 412 ~~g~~~~~TGDl~~~~~dG~l~~~GR~dd~ik~~G~~v~p~eIE~~l~~-~p~V~~a~Vv~~~~~~~g~~~~a~vv~~~~ 490 (549)
T 3g7s_A 412 EKGRKFFRTGDVGFIDEEGFLHFQDRVKEVIKYKGYTIAPFELEALLMK-HEAVMDVAVIGKPDEEAGEVPKAFIVLKPE 490 (549)
T ss_dssp TTCCEEEEEEEEEEECTTSCEEEEEEC------------CHHHHHHHTT-STTEEEEEEECCCC------CEEEEEECST
T ss_pred CCCCceEccCcEEEEcCCceEEEeccccceEEECCEEECHHHHHHHHHh-CCCeeeEEEEeeEccccCceEEEEEEECCC
Confidence 4444433 33 99999999999999999999999999 9999999999873 356777766654
Q ss_pred ---chhhcchHHHHHHHHHHhcCeeecEEEEEcCCCcccCCCchhhHHHHHHHHHcCC
Q psy14342 252 ---ESEALDLVPLVTNAVLEEHHLIVGVAVVVDPGVVPINSRGEKQRMHLRDGFLADQ 306 (316)
Q Consensus 252 ---~~~~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~lP~t~~gKi~r~~l~~~~~~~~ 306 (316)
..+.+++.+++++.+. .+..| ..+.+++ +||+|++||++|++|++.+.+..
T Consensus 491 ~~~~~~~~~l~~~l~~~L~-~~~~P-~~i~~v~--~lP~t~~GKi~R~~L~~~~~~~~ 544 (549)
T 3g7s_A 491 YRGKVDEEDIIEWVRERIS-GYKRV-REVEFVE--ELPRTASGKLLRRLLREKEAEGH 544 (549)
T ss_dssp TTTSCCHHHHHHHHHTTCC-------CCCCEEE--ECC--------------------
T ss_pred ccCcCCHHHHHHHHHHhcc-Ccccc-eEEEEec--cCCCCCCcCEeHHHHHHHhhccc
Confidence 2234566666666665 34444 3566665 89999999999999999887643
|
| >1ry2_A Acetyl-coenzyme A synthetase 1, acyl-activating enzyme 1; AMP forming, related to firefly luciferase, ligase; HET: AMP; 2.30A {Saccharomyces cerevisiae} SCOP: e.23.1.1 | Back alignment and structure |
|---|
Probab=100.00 E-value=1e-43 Score=343.53 Aligned_cols=299 Identities=15% Similarity=0.145 Sum_probs=218.1
Q ss_pred CeEEEEeccCCCCCceEEEEeHHHHHHHH-HHHHHHhcCCCCCceEEecCCcCChhhhHHHHhhhhcCceeeeeCCcccc
Q psy14342 1 MLAYLDFSVSTTGMLAGIKMSHAAVTSLC-RSMKLACELYPSRHIALCLDPYCGLGFALWVLSSVYSGHHSILIPPSEVE 79 (316)
Q Consensus 1 ~~a~i~~TSGTTG~PK~V~~t~~~l~~~~-~~~~~~~~~~~~d~~l~~~p~~h~~g~~~~~~~~l~~G~~~v~~~~~~~~ 79 (316)
|++||+|||||||.||||+++|+++...+ ......+++.++|+++...|+.|+.|+.+.++.++..|+++++.+.....
T Consensus 263 d~a~ilyTSGTTG~PKgV~~sh~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~g~~~~~~~~L~~G~t~v~~~~~~~~ 342 (663)
T 1ry2_A 263 DPLFLLYTSGSTGAPKGVQHSTAGYLLGALLTMRYTFDTHQEDVFFTAGDIGWITGHTYVVYGPLLYGCATLVFEGTPAY 342 (663)
T ss_dssp SCCEEEEECCSSSSCEEEEECSHHHHHHHHHHHHHHSCCCSSCEEEECSCTTSHHHHHHTTHHHHHHTSEEEEECSCTTS
T ss_pred CceEEEeccCCCCCCceEEEchhHHHHHHHHHHHHhcCCCCCcEEEEcCCcHHhhhhHHHHHHHHHhCCEEEEECCCCCC
Confidence 68999999999999999999999987665 34566789999999999999999999866689999999999998765444
Q ss_pred cChHHHHHHHhccceeeEEecccchhhHHhhHHhh-h----hhcccccccc--------------------cccccccch
Q psy14342 80 VNPALWLSAVSQYRVRDTFCSYGMLAGIKMSHAAV-T----SLCRSMKLAC--------------------ELYPSRHIA 134 (316)
Q Consensus 80 ~~~~~~~~~~~~~~~t~~~~~~~~~~~l~~~~~~~-~----~~~~~~~ls~--------------------e~~~~yG~t 134 (316)
.+|..+++.++++++|+++++|+++..+....... . ...+.+-..+ .+.+.||+|
T Consensus 343 ~~~~~~~~~i~~~~vt~~~~~Ps~~~~l~~~~~~~~~~~~l~sLr~i~~gGe~l~~~~~~~~~~~~g~~~~~i~~~YG~T 422 (663)
T 1ry2_A 343 PNYSRYWDIIDEHKVTQFYVAPTALRLLKRAGDSYIENHSLKSLRCLGSVGEPIAAEVWEWYSEKIGKNEIPIVDTYWQT 422 (663)
T ss_dssp SCTTHHHHHHHHTTCSEEEECHHHHHHHTTSCTTSSSSCCCTTCCEEEECSSCCCHHHHHHHHHTTSCSSSCEEECBCCT
T ss_pred CCHHHHHHHHHHcCCCEEEecHHHHHHHHhcCccccccCCcCceEEEEEEcCCCCHHHHHHHHHHhCCCCceEEEeECCc
Confidence 57889999999999999999999887665432210 0 0011111111 267789999
Q ss_pred hccCCCCCCCc-eEEEEeeeccCcccccCCCce-EEecC---------c----eEEecC-----CCcccCCCcCC-----
Q psy14342 135 LCLDPYCGLGF-ALWVLSSVYSGHHSILIPPSE-VEVNP---------A----LWLSAV-----SQYRVRDTFCS----- 189 (316)
Q Consensus 135 e~~~~~~~~~~-~~~~~~~~~~g~~~~~~~g~~-~i~d~---------~----l~v~~~-----~gY~~~~~~~~----- 189 (316)
|++.......+ .. .....|+.+.|++|++ +++|+ . |+++|+ .|||++++.+.
T Consensus 423 E~~~~~~~~~~~~~---~~~~~gs~G~p~~g~~v~i~d~~~g~~v~~~g~~Gel~i~g~~p~~~~gy~~~~~~~~~~~~~ 499 (663)
T 1ry2_A 423 ESGSHLVTPLAGGV---TPMKPGSASFPFFGIDAVVLDPNTGEELNTSHAEGVLAVKAAWPSFARTIWKNHDRYLDTYLN 499 (663)
T ss_dssp TTCSCSEECCTTTC---CCCCTTCCCEECTTCCEEEECSSSTTCEECSSCEEEEEESSCCTTSCCEETTCHHHHHHHHTS
T ss_pred cccCeeeccCCCCC---cccCCCccccCcCCCeEEEEcCCCCCcCCCCCcceEEEEecCCCchhcccccChHHHHHhhhc
Confidence 99754332221 00 1123345566899999 88886 1 899993 89999876431
Q ss_pred --------CCceeeec-Cc---CCcccceeEECCcccChHhHHHHHHHhccccceeEEEeeC-----CcEEEEEEecCCc
Q psy14342 190 --------CNGALYQG-AE---RLALDETIMLRGMRYHPIDIENSVMRAHKKIAECAVFTWT-----NLLVVVVELDGNE 252 (316)
Q Consensus 190 --------~d~g~~~~-g~---~GR~dd~i~~~G~~v~p~eIE~~l~~~~p~v~~~~v~~~~-----~~~~~~v~~~~~~ 252 (316)
+|.|++++ |. +||.||+||++|++|+|.|||++|.+ ||.|.+|+|++.. +.+++++++.+..
T Consensus 500 ~~~g~y~TGDlg~~d~dG~l~i~GR~dd~Ik~~G~rI~~~eIE~~l~~-~p~V~ea~Vvg~~~~~~g~~~~a~Vv~~~~~ 578 (663)
T 1ry2_A 500 PYPGYYFTGDGAAKDKDGYIWILGRVDDVVNVSGHRLSTAEIEAAIIE-DPIVAECAVVGFNDDLTGQAVAAFVVLKNKS 578 (663)
T ss_dssp SSTTSEEEEEEEEECTTCCEEECSCTTSCBCSSSCCBCHHHHHHHHHS-STTEEEEEEECCCCCTTSCCCEEEEEEC---
T ss_pred CCCCEEEcCCEEEEcCCCCEEEEeecCCEEEECCEEcCHHHHHHHHHh-CCCcceEEEEEEecCCCCeEEEEEEEEcCCC
Confidence 15555553 43 99999999999999999999999999 9999999999973 4678877776543
Q ss_pred h---h-hc---chHHHHHHHHHHhcCe--eecEEEEEcCCCcccCCCchhhHHHHHHHHHcC
Q psy14342 253 S---E-AL---DLVPLVTNAVLEEHHL--IVGVAVVVDPGVVPINSRGEKQRMHLRDGFLAD 305 (316)
Q Consensus 253 ~---~-~~---~l~~~~~~~l~~~~~~--~~~~~~~~~~~~lP~t~~gKi~r~~l~~~~~~~ 305 (316)
. . .+ ++.+++++.+.+.... .+..+.+++ .||+|++||++|++|++.+...
T Consensus 579 ~~~~~~~~~~~~l~~~l~~~l~~~L~~~~~P~~i~~v~--~lP~T~sGKi~R~~L~~~~~~~ 638 (663)
T 1ry2_A 579 SWSTATDDELQDIKKHLVFTVRKDIGPFAAPKLIILVD--DLPKTRSGKIMRRILRKILAGE 638 (663)
T ss_dssp ---------CCSHHHHHHHHHHHHTCTTTSCSEEEECS--CCCBCTTSCBCHHHHHHSCC--
T ss_pred ccccccchhHHHHHHHHHHHHHHhCCCCcCCeEEEEcC--CCCCCCccCchHHHHHHHHcCC
Confidence 2 1 11 4455566555544332 224555555 8999999999999999987653
|
| >3etc_A AMP-binding protein; adenylate-forming acyl-COA synthetase ligase, ligase; HET: PGE 1PE EPE; 2.10A {Methanosarcina acetivorans} | Back alignment and structure |
|---|
Probab=100.00 E-value=9.5e-44 Score=339.10 Aligned_cols=293 Identities=13% Similarity=0.091 Sum_probs=202.1
Q ss_pred CeEEEEeccCCCCCceEEEEeHHHHHHHHHHHHHHhcCCCCCceEEecCCcCChhhhHHHHhhhhcCceeeeeCCccccc
Q psy14342 1 MLAYLDFSVSTTGMLAGIKMSHAAVTSLCRSMKLACELYPSRHIALCLDPYCGLGFALWVLSSVYSGHHSILIPPSEVEV 80 (316)
Q Consensus 1 ~~a~i~~TSGTTG~PK~V~~t~~~l~~~~~~~~~~~~~~~~d~~l~~~p~~h~~g~~~~~~~~l~~G~~~v~~~~~~~~~ 80 (316)
|+++|+|||||||.||+|.++|.++.........++++.++|+++...|+.|..+.+..++.++..|+++++.++..+
T Consensus 226 d~a~i~~TSGTTG~PKgV~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~G~~~~~~~~~~~-- 303 (580)
T 3etc_A 226 DICLVYFSSGTAGFPKMVEHDNTYPLGHILTAKYWQNVEDDGLHYTVADSGWGKCVWGKLYGQWIAGCAVFVYDYDRF-- 303 (580)
T ss_dssp SEEEEEEECCSSSSCEEEEEETTHHHHHHHHHHTTSCCCTTCEEEECCCTTSTHHHHHTTHHHHHTTCEEEEEECSSC--
T ss_pred CcEEEEEeCCCCCCccEEEeccHHHHHHHHHHHHhhCCCCCceEEEeCChHHHHHHHHHHHHHHhCCcEEEEecCCCC--
Confidence 689999999999999999999999888777766777888999999999999999888778899999999998754433
Q ss_pred ChHHHHHHHhccceeeEEecccchhhHHhhHHhh-h-hhcccccccc-----------------cccccccchhccCCCC
Q psy14342 81 NPALWLSAVSQYRVRDTFCSYGMLAGIKMSHAAV-T-SLCRSMKLAC-----------------ELYPSRHIALCLDPYC 141 (316)
Q Consensus 81 ~~~~~~~~~~~~~~t~~~~~~~~~~~l~~~~~~~-~-~~~~~~~ls~-----------------e~~~~yG~te~~~~~~ 141 (316)
+|..+++.++++++|+++++|+++..+....... . ...+.+-.++ .+++.||+||++....
T Consensus 304 ~~~~~~~~i~~~~vt~~~~~P~~~~~l~~~~~~~~~l~~lr~i~~gGe~l~~~~~~~~~~~~g~~i~~~YG~TE~~~~~~ 383 (580)
T 3etc_A 304 EAKNMLEKASKYGVTTFCAPPTIYRFLIKEDLSHYNFSTLKYAVVAGEPLNPEVFNRFLEFTGIKLMEGFGQTETVVTIA 383 (580)
T ss_dssp CHHHHHHHHHHHTCCEEEECHHHHHHHHTSCC---CCTTCCEEEECSSCCCHHHHHHHHHHHSCCCEEEECCTTSSCCEE
T ss_pred CHHHHHHHHHHHCCeEEEccHHHHHHHHhcccccCCCccceEEEEccCCCCHHHHHHHHHHhCCeEecccccccccceee
Confidence 7889999999999999999999887654432110 0 0011111222 2888999999965433
Q ss_pred CCCceEEEEeeeccCcccccCCCce-EEecCc-----------eEEec-----C---CCcccCCCcCCC----------C
Q psy14342 142 GLGFALWVLSSVYSGHHSILIPPSE-VEVNPA-----------LWLSA-----V---SQYRVRDTFCSC----------N 191 (316)
Q Consensus 142 ~~~~~~~~~~~~~~g~~~~~~~g~~-~i~d~~-----------l~v~~-----~---~gY~~~~~~~~~----------d 191 (316)
..+. .....++.|.|+||++ +++|++ |+++| + .|||++++.+.. |
T Consensus 384 ~~~~-----~~~~~~~~G~p~~~~~v~ivd~~g~~~~~g~~GEl~v~~~~g~~~~~~~gY~~~p~~t~~~f~~gwy~TGD 458 (580)
T 3etc_A 384 TFPW-----MEPKPGSIGKPTPGYKIELMDRDGRLCEVGEEGEIVINTMEGKPVGLFVHYGKDPERTEETWHDGYYHTGD 458 (580)
T ss_dssp CCTT-----SCCCTTCCBEECTTCEEEEECTTSCBCCTTCCEEEEEECTTCCCTTCCCEETTCHHHHHHHEETTEEEEEE
T ss_pred cCCC-----CCCCCCccccCCCCCEEEEECCCCCCCCCCCceEEEEecCCCCCCeeeccccCCHhHHHhhcCCCEEecCc
Confidence 2221 1123345667899999 898864 99986 4 799999876642 6
Q ss_pred ceeeec-Cc---CCcccceeEECCcccChHhHHHHHHHhccccceeEEEeeC-----CcEEEEEEecCCchhhcchHHHH
Q psy14342 192 GALYQG-AE---RLALDETIMLRGMRYHPIDIENSVMRAHKKIAECAVFTWT-----NLLVVVVELDGNESEALDLVPLV 262 (316)
Q Consensus 192 ~g~~~~-g~---~GR~dd~i~~~G~~v~p~eIE~~l~~~~p~v~~~~v~~~~-----~~~~~~v~~~~~~~~~~~l~~~~ 262 (316)
.|++++ |. +||.||+||++|+||+|.|||++|.+ ||.|.+|+|++.. +.+.+++++.+.....+++.+++
T Consensus 459 lg~~d~dG~l~~~GR~dd~Ik~~G~~I~p~eIE~~l~~-~p~V~~a~Vvg~~~~~~g~~~~a~vv~~~~~~~~~~~~~~l 537 (580)
T 3etc_A 459 MAWMDEDGYLWFVGRADDIIKTSGYKVGPFEVESALIQ-HPAVLECAITGVPDPVRGQVIKATIVLTKDYTPSDSLKNEL 537 (580)
T ss_dssp EEEECTTSCEEEEEESSSCEEETTEEECHHHHHHHHTT-STTEEEEEEEEEEETTTEEEEEEEEEECTTCCCCHHHHHHH
T ss_pred EEEECCCCcEEEEecCCCEEEECCEEECHHHHHHHHHh-CCCeeeEEEEeeeccCCCcEEEEEEEECCCCCCCHHHHHHH
Confidence 666654 43 99999999999999999999999999 9999999999883 35667777665433333344444
Q ss_pred HHHHHH---hcCeeecEEEEEcCCCcccCCCchhhHHHHHHHHHc
Q psy14342 263 TNAVLE---EHHLIVGVAVVVDPGVVPINSRGEKQRMHLRDGFLA 304 (316)
Q Consensus 263 ~~~l~~---~~~~~~~~~~~~~~~~lP~t~~gKi~r~~l~~~~~~ 304 (316)
++.+.+ .+..| ..+.+++ +||+|++||++|++|++.+.+
T Consensus 538 ~~~l~~~l~~~~~P-~~i~~v~--~lP~t~sGKi~R~~Lr~~~~~ 579 (580)
T 3etc_A 538 QDHVKNVTAPYKYP-RIIEFVP--ELPKTISGKIRRVEIRDKDQS 579 (580)
T ss_dssp HHHHHHHSCGGGCC-SEEEEEC--C--------------------
T ss_pred HHHHHhhCCCccCC-eEEEEeC--CCCCCCCcCCcHHHHHhHhhc
Confidence 444443 33343 4667766 899999999999999998764
|
| >3o83_A Peptide arylation enzyme; ligase, adenylation of 2,3-dihydroxybenzoate and transfer to pantetheine cofactor of BASF; HET: IXN; 1.90A {Acinetobacter baumannii} SCOP: e.23.1.0 PDB: 3o82_A* 3o84_A* 3u16_A* 3u17_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=2.3e-44 Score=341.18 Aligned_cols=292 Identities=14% Similarity=0.119 Sum_probs=144.1
Q ss_pred CeEEEEeccCCCCCceEEEEeHHHHHHHHHHHHHHhcCCCCCceEEecCCcCChhhhH-HHHhhhhcCceeeeeCCcccc
Q psy14342 1 MLAYLDFSVSTTGMLAGIKMSHAAVTSLCRSMKLACELYPSRHIALCLDPYCGLGFAL-WVLSSVYSGHHSILIPPSEVE 79 (316)
Q Consensus 1 ~~a~i~~TSGTTG~PK~V~~t~~~l~~~~~~~~~~~~~~~~d~~l~~~p~~h~~g~~~-~~~~~l~~G~~~v~~~~~~~~ 79 (316)
|+++|+|||||||.||||+++|+++...+......+++.++|+++.++|++|.+++.. .++.++..|+++++.+..
T Consensus 192 d~a~i~~TSGTTG~PKgv~~sh~~~~~~~~~~~~~~~~~~~d~~l~~~p~~h~~~~~~~~~~~~l~~G~~~v~~~~~--- 268 (544)
T 3o83_A 192 EVAFFQLSGGSTGTPKLIPRTHNDYDYSVRASAEICGLNSNTRLLCALPAPHNFMLSSPGALGVLHAGGCVVMAPNP--- 268 (544)
T ss_dssp SEEEEEECCC--CCCCEEEEEHHHHHHHHHHHHHHTTCCTTCEEEECSCTTSHHHHHSSHHHHHHHTTCEEEECSSC---
T ss_pred ceEEEEECCCcccCCceEEechHHHHHHHHHHHHHhCCCCCCeEEEecCcceEeecchHHHHHHHHcCCEEEECCCC---
Confidence 5899999999999999999999999999999999999999999999999999988875 478899999999997643
Q ss_pred cChHHHHHHHhccceeeEEecccchhhHHhhHHhhhh---hcccccccc-----------------cccccccchhccCC
Q psy14342 80 VNPALWLSAVSQYRVRDTFCSYGMLAGIKMSHAAVTS---LCRSMKLAC-----------------ELYPSRHIALCLDP 139 (316)
Q Consensus 80 ~~~~~~~~~~~~~~~t~~~~~~~~~~~l~~~~~~~~~---~~~~~~ls~-----------------e~~~~yG~te~~~~ 139 (316)
+|..+++.++++++|+++.+|+++..+......... ..+.+..++ .+++.||+||++..
T Consensus 269 -~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~lr~i~~gG~~l~~~~~~~~~~~~~~~~~~~YG~TE~~~~ 347 (544)
T 3o83_A 269 -EPLNCFSIIQRHQVNMASLVPSAVIMWLEKAAQYKDQIQSLKLLQVGGASFPESLARQVPEVLNCKLQQVFGMAEGLVN 347 (544)
T ss_dssp -CHHHHHHHHHHHTCCEEEECHHHHHHHHHHHTTTHHHHTTCCEEEEESSCCCHHHHTHHHHHHCSEEEEEEECTTSCEE
T ss_pred -CHHHHHHHHHHHCCCEEEechHHHHHHHhchhhccccCCcceEEEEcCCCCCHHHHHHHHHHhCCcEEeeeccccccce
Confidence 688999999999999999999988766544322111 111122222 27889999998643
Q ss_pred CCCCCceEEEEeeeccCcccccC-CCce-EEecCc-----------eEEecC---CCcccCCCcCCC-----------Cc
Q psy14342 140 YCGLGFALWVLSSVYSGHHSILI-PPSE-VEVNPA-----------LWLSAV---SQYRVRDTFCSC-----------NG 192 (316)
Q Consensus 140 ~~~~~~~~~~~~~~~~g~~~~~~-~g~~-~i~d~~-----------l~v~~~---~gY~~~~~~~~~-----------d~ 192 (316)
....... .....++.|.|+ ++.+ +++|++ |+++|+ .|||++++.+.. |.
T Consensus 348 ~~~~~~~----~~~~~~~~G~p~~~~~~~~i~d~~~~~~~~g~~GEl~v~g~~v~~GY~~~~~~t~~~f~~~g~~~TGDl 423 (544)
T 3o83_A 348 YTRLDDS----DEQIFTTQGRPISSDDEIKIVDEQYREVPEGEIGMLATRGPYTFCGYYQSPEHNSQVFDEDNYYYSGDL 423 (544)
T ss_dssp ECCTTSC----HHHHHHCCCEESCTTCEEEEECTTSCBCCTTCCEEEEEECTTSCSCCTTCHHHHHHHBCTTCCEEEEEE
T ss_pred eecCCCc----hhhccCCCceecCCCcEEEEECCCCCCCCCCCeeEEEEecCCcchhhcCChhhhhhhCCCCCCeEcCCE
Confidence 2221110 001112334465 7888 888753 999999 899999765432 56
Q ss_pred eeeec-Cc---CCcccceeEECCcccChHhHHHHHHHhccccceeEEEeeC-----CcEEEEEEecCCchhhcchHHHHH
Q psy14342 193 ALYQG-AE---RLALDETIMLRGMRYHPIDIENSVMRAHKKIAECAVFTWT-----NLLVVVVELDGNESEALDLVPLVT 263 (316)
Q Consensus 193 g~~~~-g~---~GR~dd~i~~~G~~v~p~eIE~~l~~~~p~v~~~~v~~~~-----~~~~~~v~~~~~~~~~~~l~~~~~ 263 (316)
|++++ |. +||.||+||++|+||+|.|||++|.+ ||.|.+|+|++.. +.++++++......+.+++.+.++
T Consensus 424 g~~~~dG~l~~~GR~dd~ik~~G~~v~p~eIE~~l~~-~p~V~~a~vv~~~~~~~g~~~~a~vv~~~~~~~~~~l~~~~~ 502 (544)
T 3o83_A 424 VQRTPDGNLRVVGRIKDQINRGGEKIASEEIEKLILL-HPEVMHAALVAIVDEQFGEKSCAFIVSRNPELKAVVLRRHLM 502 (544)
T ss_dssp EEECTTSCEEEEEEEC----------------------------------------------------------------
T ss_pred EEEcCCCCEEEEeecCCEEEeCCEEECHHHHHHHHHh-CCCccEEEEEeccCCCCCceEEEEEEeCCCCCCHHHHHHHHH
Confidence 66653 43 99999999999999999999999999 9999999999873 456666666554444566777777
Q ss_pred H-HHHHhcCeeecEEEEEcCCCcccCCCchhhHHHHHHHHHcC
Q psy14342 264 N-AVLEEHHLIVGVAVVVDPGVVPINSRGEKQRMHLRDGFLAD 305 (316)
Q Consensus 264 ~-~l~~~~~~~~~~~~~~~~~~lP~t~~gKi~r~~l~~~~~~~ 305 (316)
+ .+. .+..| ..+.+++ +||+|++||++|++|++.+.++
T Consensus 503 ~~~l~-~~~~P-~~i~~v~--~lP~t~~GKi~r~~L~~~~~~~ 541 (544)
T 3o83_A 503 ELGIA-QYKLP-DQIKLIE--SLPLTAVGKVDKKQLRSILNTS 541 (544)
T ss_dssp -------------------------------------------
T ss_pred hCCCC-cccCC-cEEEEec--cCCCCCCCCCcHHHHHHHHhhc
Confidence 6 455 55554 4555555 8999999999999999998764
|
| >1t5h_X 4-chlorobenzoyl COA ligase; adenylate-forming coenzyme A ligase domain alternation confo change; 2.00A {Alcaligenes SP} SCOP: e.23.1.1 PDB: 1t5d_X 3cw9_A* 3cw8_X* 2qvz_X* 2qw0_X* 3dlp_X* 2qvx_X* 2qvy_X* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.4e-43 Score=332.81 Aligned_cols=286 Identities=16% Similarity=0.126 Sum_probs=215.5
Q ss_pred CeEEEEeccCCCCCceEEEEeHHHHHHHHHHHHHHhcC--CCCCceEEecCCcCChhhhHHHHhhhhcCceeeeeCCccc
Q psy14342 1 MLAYLDFSVSTTGMLAGIKMSHAAVTSLCRSMKLACEL--YPSRHIALCLDPYCGLGFALWVLSSVYSGHHSILIPPSEV 78 (316)
Q Consensus 1 ~~a~i~~TSGTTG~PK~V~~t~~~l~~~~~~~~~~~~~--~~~d~~l~~~p~~h~~g~~~~~~~~l~~G~~~v~~~~~~~ 78 (316)
|+++|+|||||||.||||++||+++...+......+++ .++|+++.++|++|.+|+...++.++..|+++++.+..
T Consensus 154 ~~a~i~~TSGTTG~PKgV~~sh~~~~~~~~~~~~~~~~~~~~~~~~l~~~p~~~~~g~~~~~~~~l~~G~~~v~~~~~-- 231 (504)
T 1t5h_X 154 QPAFIFYTSGTTGLPKAAIIPQRAAESRVLFMSTQVGLRHGRHNVVLGLMPLYHVVGFFAVLVAALALDGTYVVVEEF-- 231 (504)
T ss_dssp SEEEEEECCC---CCCEEEEEGGGHHHHHHHHHHTTCCCSSTTCEEEECSCTTSHHHHTTTHHHHHHTTCEEEECSSC--
T ss_pred CeEEEEeCCCCCCCCCEEEecHHHHHHHHHHHHHhhCCCCCCCceEEeecchhhcchHHHHHHHHHHcCceEEeCCCC--
Confidence 58999999999999999999999999888888888888 78899999999999999866688999999999998642
Q ss_pred ccChHHHHHHHhccceeeEEecccchhhHHhhHHh-hh----hhcccccccc-----------------cccccccchhc
Q psy14342 79 EVNPALWLSAVSQYRVRDTFCSYGMLAGIKMSHAA-VT----SLCRSMKLAC-----------------ELYPSRHIALC 136 (316)
Q Consensus 79 ~~~~~~~~~~~~~~~~t~~~~~~~~~~~l~~~~~~-~~----~~~~~~~ls~-----------------e~~~~yG~te~ 136 (316)
+|..+++.++++++|+++.+|+++..+...... .. ...+.+-.++ .+++.||+||+
T Consensus 232 --~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~l~~lr~~~~gG~~l~~~~~~~~~~~~~~~~~~~YG~TE~ 309 (504)
T 1t5h_X 232 --RPVDALQLVQQEQVTSLFATPTHLDALAAAAAHAGSSLKLDSLRHVTFAGATMPDAVLETVHQHLPGEKVNIYGTTEA 309 (504)
T ss_dssp --CHHHHHHHHHHHTCCEEECCHHHHHHHHHHHCCTTCCCCCTTCCEEEECCTTCCHHHHHHHHHHCCSEEEEEEEETTT
T ss_pred --CHHHHHHHHHHhCCeEEEeChHHHHHHHhhhccccccccCccccEEEEcCCcCCHHHHHHHHHhcCcceeeeeccccc
Confidence 688999999999999999999988766554311 10 0111122222 27789999998
Q ss_pred cCCCCCCCceEEEEeeeccCcccccCCCce-EEecC--------------ceEEe-cC---CCcccCCCcCC--------
Q psy14342 137 LDPYCGLGFALWVLSSVYSGHHSILIPPSE-VEVNP--------------ALWLS-AV---SQYRVRDTFCS-------- 189 (316)
Q Consensus 137 ~~~~~~~~~~~~~~~~~~~g~~~~~~~g~~-~i~d~--------------~l~v~-~~---~gY~~~~~~~~-------- 189 (316)
+.... ......++.+.+.++.+ +++|+ +|+++ |+ .|||++++.+.
T Consensus 310 ~~~~~--------~~~~~~~~~g~p~~~~~~~i~~~~~~~~~~~~~g~~GEl~v~gg~~~~~GY~~~~~~t~~~f~~g~~ 381 (504)
T 1t5h_X 310 MNSLY--------MRQPKTGTEMAPGFFSEVRIVRIGGGVDEIVANGEEGELIVAASDSAFVGYLNQPQATAEKLQDGWY 381 (504)
T ss_dssp EEEEE--------EESCSSSSEEBCCTTCCEEEECTTSCTTCBCCTTCCEEEEEECCTTSCCCBTTCHHHHHHHEETTEE
T ss_pred ccccc--------ccCCCCCccccCCCCCceeEEeccCCCCCcCCCCCcceEEEeCCceeeceecCCchhhhhhhcCCcc
Confidence 31110 01122334455788888 77753 19999 77 89999987653
Q ss_pred --CCceeeec-Cc---CCcccceeEECCcccChHhHHHHHHHhccccceeEEEeeC-----CcEEEEEEecCCc-hhhcc
Q psy14342 190 --CNGALYQG-AE---RLALDETIMLRGMRYHPIDIENSVMRAHKKIAECAVFTWT-----NLLVVVVELDGNE-SEALD 257 (316)
Q Consensus 190 --~d~g~~~~-g~---~GR~dd~i~~~G~~v~p~eIE~~l~~~~p~v~~~~v~~~~-----~~~~~~v~~~~~~-~~~~~ 257 (316)
+|.|++++ |. +||.||+||++|++|+|.|||++|.+ ||.|.+|+|++.. +.+++++++.+.. .+.++
T Consensus 382 ~TGDlg~~~~dG~l~~~GR~dd~ik~~G~~v~p~eIE~~l~~-~p~V~~a~Vv~~~~~~~g~~~~a~vv~~~~~~~~~~~ 460 (504)
T 1t5h_X 382 RTSDVAVWTPEGTVRILGRVDDMIISGGENIHPSEIERVLGT-APGVTEVVVIGLADQRWGQSVTACVVPRLGETLSADA 460 (504)
T ss_dssp EEEEEEEECTTSCEEEEEEGGGCEEETTEEECHHHHHHHHTT-STTEEEEEEEEEECSSSSEEEEEEEEECTTCCCCHHH
T ss_pred ccCcEEEECCCceEEEeCcccCEEEECCEEECHHHHHHHHHh-CCCcceEEEEEeecCCCCcEEEEEEEecCCcCcCHHH
Confidence 26666654 43 99999999999999999999999999 9999999999983 3577777776542 23456
Q ss_pred hHHHHHH-HHHHhcCeeecEEEEEcCCCcccCCCchhhHHHHHHHHH
Q psy14342 258 LVPLVTN-AVLEEHHLIVGVAVVVDPGVVPINSRGEKQRMHLRDGFL 303 (316)
Q Consensus 258 l~~~~~~-~l~~~~~~~~~~~~~~~~~~lP~t~~gKi~r~~l~~~~~ 303 (316)
+.+++++ .+. .+..| ..+.+++ +||+|++||++|++|++.|.
T Consensus 461 l~~~~~~~~L~-~~~~P-~~i~~v~--~lP~t~~GKi~r~~L~~~~~ 503 (504)
T 1t5h_X 461 LDTFCRSSELA-DFKRP-KRYFILD--QLPKNALNKVLRRQLVQQVS 503 (504)
T ss_dssp HHHHHHTSSCC-GGGSC-SEEEECS--CCCBCTTSCBCHHHHHHHHC
T ss_pred HHHHHhhccCc-ccccc-eEEEEhh--hCCCCCCCCEeHHHHHHHhc
Confidence 6666665 555 44444 4666665 89999999999999998874
|
| >3nyq_A Malonyl-COA ligase; A/B topology ababa sandwich beta-barrel adenylate-forming EN fold; HET: MCA AMP; 1.43A {Streptomyces coelicolor} PDB: 3nyr_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=2.7e-43 Score=330.96 Aligned_cols=286 Identities=16% Similarity=0.096 Sum_probs=204.0
Q ss_pred CeEEEEeccCCCCCceEEEEeHHHHHHHHHHHHHHhcCCCCCceEEecCCcCChhhhHHHHhhhhcCceeeeeCCccccc
Q psy14342 1 MLAYLDFSVSTTGMLAGIKMSHAAVTSLCRSMKLACELYPSRHIALCLDPYCGLGFALWVLSSVYSGHHSILIPPSEVEV 80 (316)
Q Consensus 1 ~~a~i~~TSGTTG~PK~V~~t~~~l~~~~~~~~~~~~~~~~d~~l~~~p~~h~~g~~~~~~~~l~~G~~~v~~~~~~~~~ 80 (316)
|+++|+|||||||.||||+++|+++...+......+++.++|+++.++|++|..|++..++.++..|+++++.+..
T Consensus 156 d~a~i~~TSGTTG~PKgV~~sh~~l~~~~~~~~~~~~~~~~d~~l~~~p~~~~~g~~~~~~~~l~~G~~~~~~~~~---- 231 (505)
T 3nyq_A 156 DPALVVYTSGTTGPPKGAVIPRRALATTLDALADAWQWTGEDVLVQGLPLFHVHGLVLGILGPLRRGGSVRHLGRF---- 231 (505)
T ss_dssp SEEEEEEECCSSSSCEEEEEEHHHHHHHHHHHHHHHTCCTTCEEEECCCTTSHHHHTTTTHHHHHHTCEEEECSSC----
T ss_pred CeEEEEeCCCCcCCCCeEEEeHHHHHHHHHHHHHHhCCCCCcEEEEeccHHHHHHHHHHHHHHHhcCCEEEECCCC----
Confidence 6899999999999999999999999999999899999999999999999999999987789999999999987543
Q ss_pred ChHHHHHHHhccceeeEEecccchhhHHhhHHh----hh--hhcccccccc-----------------cccccccchhcc
Q psy14342 81 NPALWLSAVSQYRVRDTFCSYGMLAGIKMSHAA----VT--SLCRSMKLAC-----------------ELYPSRHIALCL 137 (316)
Q Consensus 81 ~~~~~~~~~~~~~~t~~~~~~~~~~~l~~~~~~----~~--~~~~~~~ls~-----------------e~~~~yG~te~~ 137 (316)
++..+++.+ ++++++++.+|+++..+...... .. ...+.+-.++ .+++.||+||++
T Consensus 232 ~~~~~~~~i-~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~l~~lr~i~~gg~~l~~~~~~~~~~~~~~~~~~~YG~TE~~ 310 (505)
T 3nyq_A 232 STEGAAREL-NDGATMLFGVPTMYHRIAETLPADPELAKALAGARLLVSGSAALPVHDHERIAAATGRRVIERYGMTETL 310 (505)
T ss_dssp CHHHHHHHH-TTTCCEEEECHHHHHHHHHHGGGCHHHHHHHHHCSEEEECSSCCCHHHHHHHHHHHSCCCEEEEEETTTE
T ss_pred ChHHHHHHH-hhCCeEEEehHHHHHHHHHhhhcCchhhcccccceEEEECCCCCCHHHHHHHHHhcCCeeecccchhhcc
Confidence 577888888 88999999999988765542111 00 0011111122 288899999986
Q ss_pred CCCCCCCceEEEEeeeccCcccccCCCce-EEecC--------------ceEEecC---CCcccCCCcCCC---------
Q psy14342 138 DPYCGLGFALWVLSSVYSGHHSILIPPSE-VEVNP--------------ALWLSAV---SQYRVRDTFCSC--------- 190 (316)
Q Consensus 138 ~~~~~~~~~~~~~~~~~~g~~~~~~~g~~-~i~d~--------------~l~v~~~---~gY~~~~~~~~~--------- 190 (316)
........ .....++.|.|++|++ +++|+ +|+++|+ .|||++++.+..
T Consensus 311 ~~~~~~~~-----~~~~~~~vG~p~~~~~~~i~d~~g~~~~~~~~g~~GEl~v~g~~v~~GY~~~~~~t~~~f~~~g~y~ 385 (505)
T 3nyq_A 311 MNTSVRAD-----GEPRAGTVGVPLPGVELRLVEEDGTPIAALDGESVGEIQVRGPNLFTEYLNRPDATAAAFTEDGFFR 385 (505)
T ss_dssp EEEECCTT-----SCCCTTCCCEECTTCEEEEC-----CCCCCCSCCCEEEEEESTTSCCEETTCHHHHHHTBCTTSCEE
T ss_pred cccccCCC-----CCCCCCCcccCCCCCEEEEECCCCCCcccCCCCceEEEEEecCchhhhhCCChhHhhhhhcCCCCCc
Confidence 43222211 1112234556899999 88763 1999999 899998765432
Q ss_pred --Cceeeec-Cc---CCcc-cceeEECCcccChHhHHHHHHHhccccceeEEEeeC-----CcEEEEEEecCC--chhhc
Q psy14342 191 --NGALYQG-AE---RLAL-DETIMLRGMRYHPIDIENSVMRAHKKIAECAVFTWT-----NLLVVVVELDGN--ESEAL 256 (316)
Q Consensus 191 --d~g~~~~-g~---~GR~-dd~i~~~G~~v~p~eIE~~l~~~~p~v~~~~v~~~~-----~~~~~~v~~~~~--~~~~~ 256 (316)
|.|++++ |. +||. ||+||++|+||+|.|||++|.+ ||.|.+|+|++.. +.+++++++... ..+.+
T Consensus 386 TGDl~~~~~dG~l~~~GR~~d~~ik~~G~~v~~~eIE~~l~~-~p~V~~a~Vv~~~~~~~g~~l~a~vv~~~~~~~~~~~ 464 (505)
T 3nyq_A 386 TGDMAVRDPDGYVRIVGRKATDLIKSGGYKIGAGEIENALLE-HPEVREAAVTGEPDPDLGERIVAWIVPADPAAPPALG 464 (505)
T ss_dssp EEEEEEECTTSCEEEEEESSCCCEEETTEEECHHHHHHHHTT-STTEEEEEEEEEEETTTEEEEEEEEEESSTTSCCCHH
T ss_pred cCCeEEECCCccEEEeCCccCceEEeCCEEECHHHHHHHHHH-CcCccEEEEEeeECCCCCcEEEEEEEECCCCCCCCHH
Confidence 5565653 43 9997 5999999999999999999999 9999999999883 367777776642 22335
Q ss_pred chHHHHHHHHHHhcCeeecEEEEEcCCCcccCCCchhhHHHHHHH
Q psy14342 257 DLVPLVTNAVLEEHHLIVGVAVVVDPGVVPINSRGEKQRMHLRDG 301 (316)
Q Consensus 257 ~l~~~~~~~l~~~~~~~~~~~~~~~~~~lP~t~~gKi~r~~l~~~ 301 (316)
++.+++++.+. .+..| ..+.+++ +||+|++||++|++|++.
T Consensus 465 ~l~~~l~~~L~-~~~~P-~~i~~v~--~lP~t~~GKi~r~~L~~~ 505 (505)
T 3nyq_A 465 TLADHVAARLA-PHKRP-RVVRYLD--AVPRNDMGKIMKRALNRD 505 (505)
T ss_dssp HHHHHHHHHTC-GGGSC-SEEEECS--CCCC--------------
T ss_pred HHHHHHHhhCC-CCcCc-cEEEEEC--CCCCCCCcCeeHHhhccC
Confidence 67777777776 44444 4566655 999999999999999863
|
| >3rix_A Luciferase, luciferin 4-monooxygenase; oxidoreductase, photoprotein, luminescence, aspulvinone, natural product extracts; HET: 923; 1.70A {Photinus pyralis} SCOP: e.23.1.1 PDB: 1ba3_A 1lci_A* 4e5d_A* 3ies_A* 3iep_A* 3ier_A* 4g36_A* 4g37_A* 3qya_A | Back alignment and structure |
|---|
Probab=100.00 E-value=2.8e-44 Score=341.10 Aligned_cols=291 Identities=17% Similarity=0.205 Sum_probs=134.8
Q ss_pred CeEEEEeccCCCCCceEEEEeHHHHHHHHHHHHHH---hcCCCCCceEEecCCcCChhhhHHHHhhhhcCceeeeeCCcc
Q psy14342 1 MLAYLDFSVSTTGMLAGIKMSHAAVTSLCRSMKLA---CELYPSRHIALCLDPYCGLGFALWVLSSVYSGHHSILIPPSE 77 (316)
Q Consensus 1 ~~a~i~~TSGTTG~PK~V~~t~~~l~~~~~~~~~~---~~~~~~d~~l~~~p~~h~~g~~~~~~~~l~~G~~~v~~~~~~ 77 (316)
|+++|+|||||||.||||++||+++...+...... +++.++|+++.++|++|++|++. ++.++..|+++++.+..
T Consensus 191 d~a~i~~TSGTTG~PKgV~~th~~~~~~~~~~~~~~~~~~~~~~~~~l~~~p~~~~~g~~~-~~~~l~~G~~~~~~~~~- 268 (550)
T 3rix_A 191 TIALIMNSSGSTGLPKGVALPHRTACVRFSHARDPIFGNQIIPDTAILSVVPFHHGFGMFT-TLGYLICGFRVVLMYRF- 268 (550)
T ss_dssp SEEEEEEC-----CCCEEEEEHHHHHHHHHHHTCTTTSCCCCTTCEEEECSCTTSHHHHHH-HHHHHHHTCEEEECSSC-
T ss_pred CEEEEEECCCcccCcchhhhhHHHHHHHHHHhhhhhccccCCCCcEEEEechHHHHHHHHH-HHHHHHcCCEEEEeCCC-
Confidence 57999999999999999999999998877665544 46778999999999999999876 78899999999997643
Q ss_pred cccChHHHHHHHhccceeeEEecccchhhHHhhHHhhh---hhcccccccc------------------cccccccchhc
Q psy14342 78 VEVNPALWLSAVSQYRVRDTFCSYGMLAGIKMSHAAVT---SLCRSMKLAC------------------ELYPSRHIALC 136 (316)
Q Consensus 78 ~~~~~~~~~~~~~~~~~t~~~~~~~~~~~l~~~~~~~~---~~~~~~~ls~------------------e~~~~yG~te~ 136 (316)
+|..+++.++++++|+++.+|+++..+........ ...+.+-.++ .+++.||+||+
T Consensus 269 ---~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~l~~lr~i~~gG~~l~~~~~~~~~~~~~~~~v~~~YG~TE~ 345 (550)
T 3rix_A 269 ---EEELFLRSLQDYKIQSALLVPTLFSFFAKSTLIDKYDLSNLHEIASGGAPLSKEVGEAVAKRFHLPGIRQGYGLTET 345 (550)
T ss_dssp ---CHHHHHHHHHHTTCSEEEECHHHHHHHHHCCGGGGSCCTTCCEEEECSSCCCHHHHHHHHHHTTCSCCEEEEECGGG
T ss_pred ---CHHHHHHHHHHcCCeEEEeCcHHHHHHHhCccccccCcccccEEEEecCCCCHHHHHHHHHHcCCCccccccCcCcc
Confidence 68899999999999999999998876654332211 0111111222 16789999999
Q ss_pred cCCCCCCCceEEEEeeeccCcccccCCCce-EEecCc------------eEEecC---CCcccCCCcCCC----------
Q psy14342 137 LDPYCGLGFALWVLSSVYSGHHSILIPPSE-VEVNPA------------LWLSAV---SQYRVRDTFCSC---------- 190 (316)
Q Consensus 137 ~~~~~~~~~~~~~~~~~~~g~~~~~~~g~~-~i~d~~------------l~v~~~---~gY~~~~~~~~~---------- 190 (316)
+........ .....++.|.++|+++ +++|++ |+++|+ .|||++++.+..
T Consensus 346 ~~~~~~~~~-----~~~~~~~vG~~~~~~~~~i~d~~~~~~~~~g~~GEl~v~g~~v~~GY~~~~~~t~~~~~~~g~~~T 420 (550)
T 3rix_A 346 TSAILITPE-----GDDKPGAVGKVVPFFEAKVVDLDTGKTLGVNQRGELCVRGPMIMSGYVNNPEATNALIDKDGWLHS 420 (550)
T ss_dssp SSEEEECCT-----TCCCTTEEEEECTTCEEEEECTTTCCBCCTTCCEEEEEESTTSCSEETTCHHHHHHHBCTTSCEEE
T ss_pred ccceecCCC-----CCCCCCCcccccCCcEEEEEeCCCCcCCCCCCCeEEEEeCCCcchhhcCChhhhhhhcCCCCCeec
Confidence 754332221 1112234556899999 888842 999999 899999765532
Q ss_pred -Cceeeec-Cc---CCcccceeEECCcccChHhHHHHHHHhccccceeEEEeeC-----CcEEEEEEecCCc-hhhcchH
Q psy14342 191 -NGALYQG-AE---RLALDETIMLRGMRYHPIDIENSVMRAHKKIAECAVFTWT-----NLLVVVVELDGNE-SEALDLV 259 (316)
Q Consensus 191 -d~g~~~~-g~---~GR~dd~i~~~G~~v~p~eIE~~l~~~~p~v~~~~v~~~~-----~~~~~~v~~~~~~-~~~~~l~ 259 (316)
|.|++++ |. +||.||+||++|++|+|.|||++|.+ ||.|.+|+|++.. +.++++++..+.. .+.+++.
T Consensus 421 GDl~~~~~dG~l~~~GR~dd~ik~~G~~v~p~eIE~~l~~-~p~V~~a~vv~~~~~~~g~~~~a~vv~~~~~~~~~~~l~ 499 (550)
T 3rix_A 421 GDIAYWDEDEHFFIVDRLKSLIKYKGYQVAPAELESILLQ-HPNIFDAGVAGLPDDDAGELPAAVVVLEHGKTMTEKEIV 499 (550)
T ss_dssp EEEEEECTTCCEEEC-----------------------------------------------------------------
T ss_pred CcEEEEeCCceEEEEecchheeEECCEEECHHHHHHHHHh-CCCcceEEEEEeecCCCCceEEEEEEecCCCCCCHHHHH
Confidence 5555544 43 99999999999999999999999999 9999999999883 3556666555432 3446788
Q ss_pred HHHHHHHHHhcCeeecEEEEEcCCCcccCCCchhhHHHHHHHHHcC
Q psy14342 260 PLVTNAVLEEHHLIVGVAVVVDPGVVPINSRGEKQRMHLRDGFLAD 305 (316)
Q Consensus 260 ~~~~~~l~~~~~~~~~~~~~~~~~~lP~t~~gKi~r~~l~~~~~~~ 305 (316)
+++++++.. ++.++..+.+++ +||+|++||++|++|++.+.+.
T Consensus 500 ~~~~~~l~~-~~~~~~~i~~v~--~lP~t~~GKi~r~~L~~~~~~~ 542 (550)
T 3rix_A 500 DYVASQVTT-AKKLRGGVVFVD--EVPKGLTGKLDARKIREILIKA 542 (550)
T ss_dssp ----------------------------------------------
T ss_pred HHHHHhccc-ccccCCceEEEe--ecCCCCCcceeHHHHHHHHHhh
Confidence 888888773 434333455655 8999999999999999998763
|
| >1v25_A Long-chain-fatty-acid-COA synthetase; ligase, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ANP; 2.30A {Thermus thermophilus} SCOP: e.23.1.1 PDB: 1ult_A* 1v26_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=7.9e-44 Score=337.27 Aligned_cols=295 Identities=16% Similarity=0.158 Sum_probs=185.5
Q ss_pred CeEEEEeccCCCCCceEEEEeHHHHHHHHHH--HHHHhcCCCCCceEEecCCcCChhhhHHHHhhhhcCceeeeeCCccc
Q psy14342 1 MLAYLDFSVSTTGMLAGIKMSHAAVTSLCRS--MKLACELYPSRHIALCLDPYCGLGFALWVLSSVYSGHHSILIPPSEV 78 (316)
Q Consensus 1 ~~a~i~~TSGTTG~PK~V~~t~~~l~~~~~~--~~~~~~~~~~d~~l~~~p~~h~~g~~~~~~~~l~~G~~~v~~~~~~~ 78 (316)
|+++|+|||||||.||||++||+++...... ....+++.++|+++.++|++|.+++.. ++.++..|+++++.++.
T Consensus 177 ~~a~i~~TSGTTG~PKgV~~sh~~l~~~~~~~~~~~~~~~~~~d~~l~~~p~~h~~~~~~-~~~~l~~G~~~v~~~~~-- 253 (541)
T 1v25_A 177 AACGMAYTTGTTGLPKGVVYSHRALVLHSLAASLVDGTALSEKDVVLPVVPMFHVNAWCL-PYAATLVGAKQVLPGPR-- 253 (541)
T ss_dssp SEEEEEEECSSSSSCEEEEEEHHHHHHHHHHTTSTTTTCCCTTCEEEECSCTTSHHHHTH-HHHHHHHTCEEEECTTC--
T ss_pred CcEEEEECCCCCCCCcEeeeehHHHHHHHhhhhhcccccCCCCCEEEEeccchhhhHHHH-HHHHHhcCceEEeeCCC--
Confidence 5799999999999999999999999876554 224567888999999999999999865 78899999999987542
Q ss_pred ccChHHHHHHHhccceeeEEecccchhhHHhhHHhhhh---hcccccccc----------------cccccccchhccCC
Q psy14342 79 EVNPALWLSAVSQYRVRDTFCSYGMLAGIKMSHAAVTS---LCRSMKLAC----------------ELYPSRHIALCLDP 139 (316)
Q Consensus 79 ~~~~~~~~~~~~~~~~t~~~~~~~~~~~l~~~~~~~~~---~~~~~~ls~----------------e~~~~yG~te~~~~ 139 (316)
.+|..+++.++++++|+++.+|+++..+......... ..+.+..++ .+++.||+||++..
T Consensus 254 -~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~l~~lr~i~~gG~~l~~~~~~~~~~~g~~~~~~YG~TE~~~~ 332 (541)
T 1v25_A 254 -LDPASLVELFDGEGVTFTAGVPTVWLALADYLESTGHRLKTLRRLVVGGSAAPRSLIARFERMGVEVRQGYGLTETSPV 332 (541)
T ss_dssp -CSHHHHHHHHHHTTCCEEEECHHHHHHHHHHHHHHTCCCSSCCEEEECSSCCCHHHHHHHHHTTCEEEEEEECGGGSSE
T ss_pred -CCHHHHHHHHHhcCeeEEecchHHHHHHHhhhhccCCcchhccEEEECCCCCCHHHHHHHHHhCCceeecccccccccc
Confidence 2789999999999999999999988766554332110 111111222 28889999999753
Q ss_pred CCCCCce--E-EE---EeeeccCcccccCCCce-EEecCc-------------eEEecC---CCcccCCCcCCC------
Q psy14342 140 YCGLGFA--L-WV---LSSVYSGHHSILIPPSE-VEVNPA-------------LWLSAV---SQYRVRDTFCSC------ 190 (316)
Q Consensus 140 ~~~~~~~--~-~~---~~~~~~g~~~~~~~g~~-~i~d~~-------------l~v~~~---~gY~~~~~~~~~------ 190 (316)
.....+. . .. ......++.|.|+||++ +++|++ |+++|+ .|||++++.+..
T Consensus 333 ~~~~~~~~~~~~~~~~~~~~~~~~~G~p~~~~~~~i~d~~g~~~~~~~~~~GEl~v~g~~v~~GY~~~p~~t~~~f~~~g 412 (541)
T 1v25_A 333 VVQNFVKSHLESLSEEEKLTLKAKTGLPIPLVRLRVADEEGRPVPKDGKALGEVQLKGPWITGGYYGNEEATRSALTPDG 412 (541)
T ss_dssp EEECCCCGGGTTSCHHHHHHHHTSCBEECTTCEEEEECTTSCBCCSSSCCCEEEEEESTTSBSSCBTCHHHHHTTBCTTS
T ss_pred eecccccccccccCccccccccCCCCCcCCCcEEEEECCCCCCCCCCCCcceEEEEeCcchhccccCChhhhhhhccCCC
Confidence 3221110 0 00 00011235566899999 888741 999999 899999766532
Q ss_pred -----Cceeeec-Cc---CCcccceeEECCcccChHhHHHHHHHhccccceeEEEeeC-----CcEEEEEEecCCchhhc
Q psy14342 191 -----NGALYQG-AE---RLALDETIMLRGMRYHPIDIENSVMRAHKKIAECAVFTWT-----NLLVVVVELDGNESEAL 256 (316)
Q Consensus 191 -----d~g~~~~-g~---~GR~dd~i~~~G~~v~p~eIE~~l~~~~p~v~~~~v~~~~-----~~~~~~v~~~~~~~~~~ 256 (316)
|.|++++ |. +||.||+||++|++|+|.|||++|.+ ||.|.+|+|++.. +.+++++++.....+.+
T Consensus 413 ~~~TGDlg~~d~dG~l~~~GR~~d~ik~~G~~v~p~eIE~~l~~-~p~V~~a~Vv~~~~~~~~~~~~a~vv~~~~~~~~~ 491 (541)
T 1v25_A 413 FFRTGDIAVWDEEGYVEIKDRLKDLIKSGGEWISSVDLENALMG-HPKVKEAAVVAIPHPKWQERPLAVVVPRGEKPTPE 491 (541)
T ss_dssp CEEEEEEEEECTTCCEEEEEESSCEEEETTEEEEHHHHHCC-----------CEEEEECSSSSEEEEECC----------
T ss_pred CeEcCCEEEEcCCceEEEeecccceeeeCCEEECHHHHHHHHHh-CCCceEEEEEEecCCCcCceEEEEEEECCCCCCHH
Confidence 5555543 43 99999999999999999999999999 9999999999883 35666665543233445
Q ss_pred chHHHHHH-HHHHhcCeeecEEEEEcCCCcccCCCchhhHHHHHHHHHc
Q psy14342 257 DLVPLVTN-AVLEEHHLIVGVAVVVDPGVVPINSRGEKQRMHLRDGFLA 304 (316)
Q Consensus 257 ~l~~~~~~-~l~~~~~~~~~~~~~~~~~~lP~t~~gKi~r~~l~~~~~~ 304 (316)
++.+++++ .+. .+..| ..+.+++ +||+|++||++|++|++.|.+
T Consensus 492 ~l~~~~~~~~L~-~~~~P-~~i~~v~--~lP~t~~GKi~r~~L~~~~~~ 536 (541)
T 1v25_A 492 ELNEHLLKAGFA-KWQLP-DAYVFAE--EIPRTSAGKFLKRALREQYKN 536 (541)
T ss_dssp ---------CCC-TTTSC-SBC----------------CCTTHHHHSTT
T ss_pred HHHHHHHhccCc-cccCC-cEEEEeC--CCCCCCccCeeHHHHHHHHHH
Confidence 67777766 455 45554 4566665 899999999999999998765
|
| >4dg8_A PA1221; ANL superfamily, adenylation domain, peptidyl carrier protei ribosomal peptide synthetase, NRPS, valine adenylation, LIG; HET: AMP; 2.15A {Pseudomonas aeruginosa} PDB: 4dg9_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.5e-42 Score=332.94 Aligned_cols=289 Identities=15% Similarity=0.125 Sum_probs=209.0
Q ss_pred CeEEEEeccCCCCCceEEEEeHHHHHHHHHHHHHHhcCCCCCceEEecCCcCChhhhHHHHhhhhcCceeeeeCCccccc
Q psy14342 1 MLAYLDFSVSTTGMLAGIKMSHAAVTSLCRSMKLACELYPSRHIALCLDPYCGLGFALWVLSSVYSGHHSILIPPSEVEV 80 (316)
Q Consensus 1 ~~a~i~~TSGTTG~PK~V~~t~~~l~~~~~~~~~~~~~~~~d~~l~~~p~~h~~g~~~~~~~~l~~G~~~v~~~~~~~~~ 80 (316)
|+|||+|||||||.||||+++|+++...+.. ...+++.++|+++.+.|++|+.+++. ++.++..|+++++.+... .
T Consensus 165 d~a~iiyTSGSTG~PKgV~~th~~l~~~~~~-~~~~~~~~~d~~l~~~p~~~~~~~~~-~~~~l~~G~~~v~~~~~~--~ 240 (620)
T 4dg8_A 165 QIAYINFSSGTTGRPKAIACTHAGITRLCLG-QSFLAFAPQMRFLVNSPLSFDAATLE-IWGALLNGGCCVLNDLGP--L 240 (620)
T ss_dssp SEEEEEEEBSSSSSCEEEEEEHHHHHHHHSS-CGGGTTCTTCEEEECSCTTSTHHHHH-HHHHHTTTCEEEECCSSS--C
T ss_pred CeEEEEECCCccccCeEEEEchHHHHHHHHH-HHhhCCCCCCEEEEECccCHHHHHHH-HHHHHhcCCEEEeCcccc--C
Confidence 6899999999999999999999999776554 45678889999999999999999887 899999999999874332 3
Q ss_pred ChHHHHHHHhccceeeEEecccchhhHHhhHHhhhhhcccccccc------------------cccccccchhccCCCCC
Q psy14342 81 NPALWLSAVSQYRVRDTFCSYGMLAGIKMSHAAVTSLCRSMKLAC------------------ELYPSRHIALCLDPYCG 142 (316)
Q Consensus 81 ~~~~~~~~~~~~~~t~~~~~~~~~~~l~~~~~~~~~~~~~~~ls~------------------e~~~~yG~te~~~~~~~ 142 (316)
+|..+++.++++++++++.+|+++..+...........+.+-.++ .+++.||+||++.....
T Consensus 241 ~~~~~~~~i~~~~vt~~~~~Ps~~~~l~~~~~~~l~~lr~v~~gGe~l~~~~~~~~~~~~~~~~l~n~YG~TE~~~~~~~ 320 (620)
T 4dg8_A 241 DPGVLRQLIGERGADSAWLTASLFNTLVDLDPDCLGGLRQLLTGGDILSVPHVRRALLRHPRLHLVNGYGPTENTTFTCC 320 (620)
T ss_dssp CHHHHHHHHHTTCCCEEEEEHHHHHHHHHHCGGGGTTCSEEEEESSCCCHHHHHHHHHHCTTCEEEEEECCGGGCSCSEE
T ss_pred CHHHHHHHHHHhCCcEEEccHHHHHHHHhcChhhCCCccEEEEEeCcCCHHHHHHHHHhCCCeEEEeeEchhhhhhheEE
Confidence 789999999999999999999988766442221111112222222 28889999998753321
Q ss_pred CCceEEEEeeeccCcccccCCCce-EEecCc------------eEEecC---CCcccCCCcCCC----------------
Q psy14342 143 LGFALWVLSSVYSGHHSILIPPSE-VEVNPA------------LWLSAV---SQYRVRDTFCSC---------------- 190 (316)
Q Consensus 143 ~~~~~~~~~~~~~g~~~~~~~g~~-~i~d~~------------l~v~~~---~gY~~~~~~~~~---------------- 190 (316)
..... .......++.|.|++|++ +++|++ |+++|+ .|||++++.+..
T Consensus 321 ~~~~~-~~~~~~~~~iG~p~~~~~~~i~d~~~~~~~~~g~~GEl~i~G~~v~~GY~~~p~~t~~~f~~~p~~~~~~~~yr 399 (620)
T 4dg8_A 321 HVVTD-DDLEEDDIPIGKAIAGTAVLLLDEHGQEIAEPDRAGEIVAFGAGLAQGYRNDAARTRASFVELPYRGRLLRAYR 399 (620)
T ss_dssp EECCT-GGGGSSSCCCBEECTTEEEEEECTTSCBCCSSSCCEEEEEEETTCCSEETTCHHHHHHHEEEEEETTEEEEEEE
T ss_pred Eeccc-cccCCCCCCceecccCcEEEEECccCCCCCCCCCceEEEEeccccccccCCChhhhhhhhccCCCCCCCceEEe
Confidence 10000 000011225566899999 888754 999999 999998765432
Q ss_pred --Cceeeec-Cc---CCcccceeEECCcccChHhHHHHHHHhccccceeEEEeeCC----cEEEEEEecCCchhhcchHH
Q psy14342 191 --NGALYQG-AE---RLALDETIMLRGMRYHPIDIENSVMRAHKKIAECAVFTWTN----LLVVVVELDGNESEALDLVP 260 (316)
Q Consensus 191 --d~g~~~~-g~---~GR~dd~i~~~G~~v~p~eIE~~l~~~~p~v~~~~v~~~~~----~~~~~v~~~~~~~~~~~l~~ 260 (316)
|.|++++ |. +||.||+||++|+||+|.|||++|.+ ||+|.+|+|++..+ .+++++... .+++.+
T Consensus 400 TGDl~~~~~dG~l~~~GR~dd~Ik~~G~ri~~~eIE~~l~~-~p~V~~a~Vv~~~~~~~~~lv~~~~~~-----~~~~~~ 473 (620)
T 4dg8_A 400 TGDRARYDEQGRLRFIGRGDGQVKLNGYRLDLPALEQRFRR-QPGILDCALLVRERNGVKQLLCAWTGK-----ADASPQ 473 (620)
T ss_dssp EEEEEEECTTSCEEEEECSSSEEEETTEEEEHHHHHHHHHT-STTEEEEEEEEEEETTEEEEEEEEEEC-----TTCCCH
T ss_pred CCCEEEECCCCeEEEEccCCCEEEECCEEcCHHHHHHHHHh-CCCccEEEEEEEeCCCceEEEEEEecC-----hHHHHH
Confidence 4555543 43 99999999999999999999999999 99999999998842 333333322 234556
Q ss_pred HHHHHHHHhcCeeecEEEEEcCCCcccCCCchhhHHHHHHHHHc
Q psy14342 261 LVTNAVLEEHHLIVGVAVVVDPGVVPINSRGEKQRMHLRDGFLA 304 (316)
Q Consensus 261 ~~~~~l~~~~~~~~~~~~~~~~~~lP~t~~gKi~r~~l~~~~~~ 304 (316)
++++.++ .+..| ..+.++ ++||+|++||++|++|++.+.+
T Consensus 474 ~l~~~Lp-~y~~P-~~~~~v--~~lP~t~~GKidR~~L~~~~~~ 513 (620)
T 4dg8_A 474 ALLRQLP-TWQRP-HACVRV--EALPLTAHGKLDRAALLRRLEE 513 (620)
T ss_dssp HHHHHSC-GGGSC-SEEEEC--SSCCCC----CCHHHHHHHTCS
T ss_pred HHHHhCh-hhcCC-cEEEEE--CcCCCCcccCHhHHHHhhcccc
Confidence 6777776 44444 455555 4999999999999999988765
|
| >3l8c_A D-alanine--poly(phosphoribitol) ligase subunit 1; structural genomics, DLTA, ATP-binding, cytoplasm, nucleotide-binding; 2.41A {Streptococcus pyogenes serotype M6} PDB: 3lgx_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=8.4e-43 Score=328.86 Aligned_cols=301 Identities=11% Similarity=0.069 Sum_probs=207.1
Q ss_pred CeEEEEeccCCCCCceEEEEeHHHHHHHHHHHHHH--hcCCCCCceEEecCCcCChhhhHHHHhhhhcCceeeeeCCccc
Q psy14342 1 MLAYLDFSVSTTGMLAGIKMSHAAVTSLCRSMKLA--CELYPSRHIALCLDPYCGLGFALWVLSSVYSGHHSILIPPSEV 78 (316)
Q Consensus 1 ~~a~i~~TSGTTG~PK~V~~t~~~l~~~~~~~~~~--~~~~~~d~~l~~~p~~h~~g~~~~~~~~l~~G~~~v~~~~~~~ 78 (316)
|+++|+|||||||.||||++||+++...+...... +++.++++++.+.|++|..++.. ++.++..|+++++.+.. .
T Consensus 146 d~a~i~~TSGTTG~PKgV~~sh~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~-~~~~l~~G~~~~~~~~~-~ 223 (521)
T 3l8c_A 146 DNYYIIFTSGTTGQPKGVQISHDNLLSFTNWMIEDAAFDVPKQPQMLAQPPYSFDLSVMY-WAPTLALGGTLFALPKE-L 223 (521)
T ss_dssp SEEEEEECCC---CCCEEEEEHHHHHHHHHHHHHCTTTCCCSSCEEECCSCTTSGGGHHH-HHHHHHTTCEEEECCGG-G
T ss_pred CcEEEEEcCCCCCCCCEEEEehHHHHHHHHHHhhccccCCCCCCeEEecCCccHHHHHHH-HHHHHhcCCEEEEcCHH-H
Confidence 68999999999999999999999999877766555 67778899999999999988776 78899999999887543 3
Q ss_pred ccChHHHHHHHhccceeeEEecccchhhHHhhHHhhhh---hcccccccc------------------cccccccchhcc
Q psy14342 79 EVNPALWLSAVSQYRVRDTFCSYGMLAGIKMSHAAVTS---LCRSMKLAC------------------ELYPSRHIALCL 137 (316)
Q Consensus 79 ~~~~~~~~~~~~~~~~t~~~~~~~~~~~l~~~~~~~~~---~~~~~~ls~------------------e~~~~yG~te~~ 137 (316)
..++..+++.+++++++++..+|+++..+......... ..+.+..++ .+++.||+||++
T Consensus 224 ~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~lr~~~~gG~~l~~~~~~~~~~~~~~~~i~~~YG~TE~~ 303 (521)
T 3l8c_A 224 VADFKQLFTTIAQLPVGIWTSTPSFADMAMLSDDFCQAKMPALTHFYFDGEELTVSTARKLFERFPSAKIINAYGPTEAT 303 (521)
T ss_dssp TTCHHHHHHHHHHSCCSEEEECHHHHHHHHTSTTCSTTTCTTCCEEEECSSCCCHHHHHHHHHHCTTCEEEEEECCGGGS
T ss_pred hhCHHHHHHHHHHcCCcEEEeCCCHHHHHhhhhccccccCccceEEEEecccCCHHHHHHHHHHCCCceEEeCcCccHHh
Confidence 45788999999999999999999987654433221110 011111122 278899999997
Q ss_pred CCCCCCCceEEEEeeeccCcccccCCCce-EEecCc-----------eEEecC---CCcccCCCcCC-------------
Q psy14342 138 DPYCGLGFALWVLSSVYSGHHSILIPPSE-VEVNPA-----------LWLSAV---SQYRVRDTFCS------------- 189 (316)
Q Consensus 138 ~~~~~~~~~~~~~~~~~~g~~~~~~~g~~-~i~d~~-----------l~v~~~---~gY~~~~~~~~------------- 189 (316)
..................++.|.|+||++ +++|++ |+++|+ .|||++++.+.
T Consensus 304 ~~~~~~~~~~~~~~~~~~~~vG~p~~~~~~~i~d~~g~~~~~g~~GEl~v~g~~v~~GY~~~~~~t~~~f~~~~~~~~~~ 383 (521)
T 3l8c_A 304 VALSAIEITREMVDNYTRLPIGYPKPDSPTYIIDEDGKELSSGEQGEIIVTGPAVSKGYLNNPEKTAEAFFTFKGQPAYH 383 (521)
T ss_dssp SCSEEEEECHHHHHHCSSCEEEEECTTSCEEEECTTSCBCCTTCCEEEEEESTTSCSCBTTCHHHHHHHEEEETTEEEEE
T ss_pred hhhceeecccccccCCCccccccccCCCEEEEECCCcCCCCCCCceEEEecccccChhhcCCchHhhccCcCCCCceeee
Confidence 54321110000000011224556899999 888864 999999 99999876542
Q ss_pred -CCceeeec-Cc---CCcccceeEECCcccChHhHHHHHHHhccccceeEEEeeC------CcEEEEEEecCCchhh---
Q psy14342 190 -CNGALYQG-AE---RLALDETIMLRGMRYHPIDIENSVMRAHKKIAECAVFTWT------NLLVVVVELDGNESEA--- 255 (316)
Q Consensus 190 -~d~g~~~~-g~---~GR~dd~i~~~G~~v~p~eIE~~l~~~~p~v~~~~v~~~~------~~~~~~v~~~~~~~~~--- 255 (316)
+|.|++++ |. .||.||+||++|+||+|.|||++|.+ ||.|.+|+|++.. +.+++++++.+.....
T Consensus 384 TGDlg~~d~dG~l~~~GR~~d~i~~~G~~v~p~eIE~~l~~-~p~V~~a~vv~~~~~~~~~~~~~a~vv~~~~~~~~~~~ 462 (521)
T 3l8c_A 384 TGDIGSLTEDNILLYGGRLDFQIKYAGYRIELEDVSQQLNQ-SPMVASAVAVPRYNKEHKVQNLLAYIVVKDGVKERFDR 462 (521)
T ss_dssp EEEEEEECSSSCEEEEEEGGGBCC-----CBHHHHHHHHHT-STTEEEEEEECCCSSSCC---CEEEEEECTTSGGGCSS
T ss_pred CCCEEEEeCCCeEEEeCcccceEeECCEEeCHHHHHHHHHc-CCCcceEEEEEeecCCCCceEEEEEEEecCcccccccc
Confidence 25555544 33 89999999999999999999999999 9999999999762 3567777776543221
Q ss_pred -cchHHHHHHHHHHhcCe--eecEEEEEcCCCcccCCCchhhHHHHHHHHHcCC
Q psy14342 256 -LDLVPLVTNAVLEEHHL--IVGVAVVVDPGVVPINSRGEKQRMHLRDGFLADQ 306 (316)
Q Consensus 256 -~~l~~~~~~~l~~~~~~--~~~~~~~~~~~~lP~t~~gKi~r~~l~~~~~~~~ 306 (316)
.++.+.+++.+.+.... .+..+.++ ++||+|++||++|++|++.+.+..
T Consensus 463 ~~~~~~~l~~~l~~~l~~~~~P~~i~~v--~~lP~t~~GKidr~~L~~~~~~~~ 514 (521)
T 3l8c_A 463 ELELTKAIKASVKDHMMSYMMPSKFLYR--DSLPLTPNGKIDIKTLINEVNNRE 514 (521)
T ss_dssp HHHHHHHHHHHSGGGSCGGGSCSEEEEC--SSCCBCTTSSBCHHHHHHHTC---
T ss_pred chhhHHHHHHHHHhhCccccCCeEEEEe--cccCCCCCcCccHHHHhhhhhcCC
Confidence 13455566666554332 22345554 599999999999999999987644
|
| >3c5e_A Acyl-coenzyme A synthetase ACSM2A, mitochondrial; middle-chain acyl-COA synthetase, xenobiotic/medium-chain FA COA ligase; HET: ATP; 1.60A {Homo sapiens} PDB: 2vze_A 3b7w_A* 3day_A* 3eq6_A* 3eyn_A* 3gpc_A* 2wd9_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=2.9e-42 Score=328.32 Aligned_cols=291 Identities=14% Similarity=0.069 Sum_probs=213.8
Q ss_pred CeEEEEeccCCCCCceEEEEeHHHHHH--HHHHHHHHhcCCCCCceEEecCCcCChhhhHHHHhhhhcCceeeeeCCccc
Q psy14342 1 MLAYLDFSVSTTGMLAGIKMSHAAVTS--LCRSMKLACELYPSRHIALCLDPYCGLGFALWVLSSVYSGHHSILIPPSEV 78 (316)
Q Consensus 1 ~~a~i~~TSGTTG~PK~V~~t~~~l~~--~~~~~~~~~~~~~~d~~l~~~p~~h~~g~~~~~~~~l~~G~~~v~~~~~~~ 78 (316)
|+++|+|||||||.||||+++|+ ++. ..... ..+++.++|+++.++|++|+++++..++.++..|+++++.....
T Consensus 207 d~a~i~~TSGTTG~PKgV~~sh~-~~~~~~~~~~-~~~~~~~~d~~~~~~p~~~~~~~~~~~~~~l~~G~~~~~~~~~~- 283 (570)
T 3c5e_A 207 EASAIYFTSGTSGLPKMAEHSYS-SLGLKAKMDA-GWTGLQASDIMWTISDTGWILNILCSLMEPWALGACTFVHLLPK- 283 (570)
T ss_dssp SEEEEEECCCSSSSCCEEEEEHH-HHHHHHHHHT-TTTSCCTTCEEEECCCTTSHHHHHHTTHHHHHHTCEEEEECCSS-
T ss_pred CcEEEEECCCCCCCCCEEEechH-HHHhhhhhhh-hhcCCCCCceEEEcCchHHHHHHHHHHHHHHHhCceEEEecCCC-
Confidence 68999999999999999999999 444 33333 66788899999999999999998866889999999999986432
Q ss_pred ccChHHHHHHHhccceeeEEecccchhhHHhhHHhh-h-hhcccccccc-----------------cccccccchhccCC
Q psy14342 79 EVNPALWLSAVSQYRVRDTFCSYGMLAGIKMSHAAV-T-SLCRSMKLAC-----------------ELYPSRHIALCLDP 139 (316)
Q Consensus 79 ~~~~~~~~~~~~~~~~t~~~~~~~~~~~l~~~~~~~-~-~~~~~~~ls~-----------------e~~~~yG~te~~~~ 139 (316)
.+|..+++.++++++|+++.+|+++..+....... . ...+.+-.++ .+++.||+||++..
T Consensus 284 -~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~lr~i~~gGe~l~~~~~~~~~~~~g~~i~~~YG~TE~~~~ 362 (570)
T 3c5e_A 284 -FDPLVILKTLSSYPIKSMMGAPIVYRMLLQQDLSSYKFPHLQNCVTVGESLLPETLENWRAQTGLDIRESYGQTETGLT 362 (570)
T ss_dssp -CCHHHHHHHHHHSCCCEEEECHHHHHHHHTSCTTTCCCTTCCEEEEESSCCCHHHHHHHHHHHSCCCEEEEEETTTEEE
T ss_pred -CCHHHHHHHHHHhCCeEEeccHHHHHHHHhccccccccccceEEEEcCCcCCHHHHHHHHHHhCCchhhccchhhcccc
Confidence 27899999999999999999999887665432110 0 0011111222 27889999998643
Q ss_pred CCCCCceEEEEeeeccCcccccCCCce-EEecCc-----------eEEe-----cC---CCcccCCCcCC----------
Q psy14342 140 YCGLGFALWVLSSVYSGHHSILIPPSE-VEVNPA-----------LWLS-----AV---SQYRVRDTFCS---------- 189 (316)
Q Consensus 140 ~~~~~~~~~~~~~~~~g~~~~~~~g~~-~i~d~~-----------l~v~-----~~---~gY~~~~~~~~---------- 189 (316)
...... .....++.|.+++|++ +++|++ |+++ |+ .|||++++.+.
T Consensus 363 ~~~~~~-----~~~~~~~vG~p~~~~~v~i~d~~g~~~~~G~~GEl~v~~~~~~g~~v~~GY~~~~~~t~~~f~~~~~~T 437 (570)
T 3c5e_A 363 CMVSKT-----MKIKPGYMGTAASCYDVQIIDDKGNVLPPGTEGDIGIRVKPIRPIGIFSGYVDNPDKTAANIRGDFWLL 437 (570)
T ss_dssp EECCTT-----SCCCTTCCCEECTTCCEEEECTTSCBCCTTCCEEEEEECSSBCCTTCCCEETTCHHHHHHTEETTEEEE
T ss_pred eecCcc-----cccCCCcccccCCCceEEEECCCCCCCCCCCCCeeEEeccCCCCchhhccccCChhHhhhhhcCCcccc
Confidence 221111 0122345566899999 888854 9998 77 89999976653
Q ss_pred CCceeeec-Cc---CCcccceeEECCcccChHhHHHHHHHhccccceeEEEeeC-----CcEEEEEEecCCc--hhhcch
Q psy14342 190 CNGALYQG-AE---RLALDETIMLRGMRYHPIDIENSVMRAHKKIAECAVFTWT-----NLLVVVVELDGNE--SEALDL 258 (316)
Q Consensus 190 ~d~g~~~~-g~---~GR~dd~i~~~G~~v~p~eIE~~l~~~~p~v~~~~v~~~~-----~~~~~~v~~~~~~--~~~~~l 258 (316)
+|.|++++ |. +||.||+||++|++|+|.|||++|.+ ||.|.+|+|++.. +.+++++++.+.. .+.+.+
T Consensus 438 GDlg~~d~dG~l~~~GR~dd~Ik~~G~~V~p~eIE~~l~~-~p~V~~a~Vv~~~~~~~g~~~~a~vv~~~~~~~~~~~~~ 516 (570)
T 3c5e_A 438 GDRGIKDEDGYFQFMGRADDIINSSGYRIGPSEVENALME-HPAVVETAVISSPDPVRGEVVKAFVVLASQFLSHDPEQL 516 (570)
T ss_dssp EEEEEECTTSCEEEEEEGGGCEEETTEEECHHHHHHHHHT-STTEEEEEEEEEEETTTEEEEEEEEEECGGGTTSCHHHH
T ss_pred ceeEEEcCCceEEEEecCCCEEEECCEEECHHHHHHHHHh-CCCcceEEEEeeeCCCCCeEEEEEEEECCcccCcchHHH
Confidence 26666654 43 99999999999999999999999999 9999999999883 3566777665432 112223
Q ss_pred HHHHHHHHHH---hcCeeecEEEEEcCCCcccCCCchhhHHHHHHHHHc
Q psy14342 259 VPLVTNAVLE---EHHLIVGVAVVVDPGVVPINSRGEKQRMHLRDGFLA 304 (316)
Q Consensus 259 ~~~~~~~l~~---~~~~~~~~~~~~~~~~lP~t~~gKi~r~~l~~~~~~ 304 (316)
.+++++.+.+ .+..| ..+.+++ +||+|++||++|++|++.+.+
T Consensus 517 ~~~l~~~l~~~L~~~~~P-~~i~~v~--~lP~t~~GKi~R~~L~~~~~~ 562 (570)
T 3c5e_A 517 TKELQQHVKSVTAPYKYP-RKIEFVL--NLPKTVTGKIQRAKLRDKEWK 562 (570)
T ss_dssp HHHHHHHHHHHSCGGGSC-SEEEEES--CCCBCTTCCBCHHHHHHHHTC
T ss_pred HHHHHHHHHhhCccccCC-cEEEEec--cCCCCCCcCCcHHHHHHHHHh
Confidence 4444444443 33344 5677776 899999999999999998854
|
| >1amu_A GRSA, gramicidin synthetase 1; peptide synthetase, adenylate forming; HET: PHE AMP; 1.90A {Brevibacillus brevis} SCOP: e.23.1.1 | Back alignment and structure |
|---|
Probab=100.00 E-value=7.5e-43 Score=331.91 Aligned_cols=290 Identities=14% Similarity=0.099 Sum_probs=212.1
Q ss_pred CeEEEEeccCCCCCceEEEEeHHHHHHHHHHHHHHhcCCCCCceEEecCCcCChhhhHHHHhhhhcCceeeeeCCccccc
Q psy14342 1 MLAYLDFSVSTTGMLAGIKMSHAAVTSLCRSMKLACELYPSRHIALCLDPYCGLGFALWVLSSVYSGHHSILIPPSEVEV 80 (316)
Q Consensus 1 ~~a~i~~TSGTTG~PK~V~~t~~~l~~~~~~~~~~~~~~~~d~~l~~~p~~h~~g~~~~~~~~l~~G~~~v~~~~~~~~~ 80 (316)
|+++|+|||||||.||||++||+++...+......+++.++|+++.++|++|+.+++. ++.++..|+++++.+... ..
T Consensus 183 d~a~i~~TSGTTG~PKgV~~th~~l~~~~~~~~~~~~~~~~d~~l~~~p~~~~~~~~~-~~~~l~~G~~~v~~~~~~-~~ 260 (563)
T 1amu_A 183 DLAYVIYTSGTTGNPKGTMLEHKGISNLKVFFENSLNVTEKDRIGQFASISFDASVWE-MFMALLTGASLYIILKDT-IN 260 (563)
T ss_dssp SEEEEEEEC-----CEEEEEESHHHHHHHHHHHHTSCCCTTCEEEECSCTTSTHHHHH-HHHHHTTTCEEEECCHHH-HT
T ss_pred CeEEEEECCCCCCCCcEEEEehHHHHHHHHHHHHhcCCCCCCEEEEeCCccHHHHHHH-HHHHHHCCCEEEEcChHh-hc
Confidence 6899999999999999999999999988888888889999999999999999998875 789999999999876432 34
Q ss_pred ChHHHHHHHhccceeeEEecccchhhHHhhHHhhhhhcccccccc---------------cccccccchhccCCCCCCCc
Q psy14342 81 NPALWLSAVSQYRVRDTFCSYGMLAGIKMSHAAVTSLCRSMKLAC---------------ELYPSRHIALCLDPYCGLGF 145 (316)
Q Consensus 81 ~~~~~~~~~~~~~~t~~~~~~~~~~~l~~~~~~~~~~~~~~~ls~---------------e~~~~yG~te~~~~~~~~~~ 145 (316)
++..+++.++++++++++.+|+++..+... ... ..+.+-.++ .+++.||+||++.......+
T Consensus 261 ~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~--~~~-~lr~~~~gG~~l~~~~~~~~~~~~~~~~~YG~TE~~~~~~~~~~ 337 (563)
T 1amu_A 261 DFVKFEQYINQKEITVITLPPTYVVHLDPE--RIL-SIQTLITAGSATSPSLVNKWKEKVTYINAYGPTETTICATTWVA 337 (563)
T ss_dssp CHHHHHHHHHHTTCCEEEECHHHHTTSCTT--TCC-SCSEEEEESSCCCHHHHHHHTTTSEEEEEECCGGGSSCSEEEEC
T ss_pred CHHHHHHHHHHcCCcEEEeCHHHHHHHHhc--ccc-cccEEEEEEecCCHHHHHHHHhCCeEEEEECcCHHhHhheeeec
Confidence 788999999999999999999877644321 111 011111122 28889999998643221110
Q ss_pred eEEEEeeeccCcccccCCCce-EEecCc-----------eEEecC---CCcccCCCcCC-----------------CCce
Q psy14342 146 ALWVLSSVYSGHHSILIPPSE-VEVNPA-----------LWLSAV---SQYRVRDTFCS-----------------CNGA 193 (316)
Q Consensus 146 ~~~~~~~~~~g~~~~~~~g~~-~i~d~~-----------l~v~~~---~gY~~~~~~~~-----------------~d~g 193 (316)
.. ......++.|.|+||++ +++|++ |+++|+ .|||++++.+. +|.|
T Consensus 338 ~~--~~~~~~~~vG~p~~~~~v~i~d~~~~~~~~g~~GEl~v~g~~v~~GY~~~pe~t~~~f~~~~~~~g~~w~~TGDlg 415 (563)
T 1amu_A 338 TK--ETIGHSVPIGAPIQNTQIYIVDENLQLKSVGEAGELCIGGEGLARGYWKRPELTSQKFVDNPFVPGEKLYKTGDQA 415 (563)
T ss_dssp CS--SCCCSSCCCBEECTTEEEEEECTTSCBCCTTCEEEEEEEETTCCCEETTCHHHHHHHEEECSSSTTSEEEEEEEEE
T ss_pred cc--ccCCCCCcccceeCCCEEEEECCCcCCCCCCCcEEEEEechhhChhhCCCchhhhhhcccCCCCCCCEEEecCCEE
Confidence 00 00011224566899999 888864 999999 89999875432 2455
Q ss_pred eeec-Cc---CCcccceeEECCcccChHhHHHHHHHhccccceeEEEeeC-----CcEEEEEEecCCchhhcchHHHHHH
Q psy14342 194 LYQG-AE---RLALDETIMLRGMRYHPIDIENSVMRAHKKIAECAVFTWT-----NLLVVVVELDGNESEALDLVPLVTN 264 (316)
Q Consensus 194 ~~~~-g~---~GR~dd~i~~~G~~v~p~eIE~~l~~~~p~v~~~~v~~~~-----~~~~~~v~~~~~~~~~~~l~~~~~~ 264 (316)
++++ |. +||.||+||++|++|+|.|||++|.+ ||.|.+|+|++.. +.++++++... ..+.+++.+++++
T Consensus 416 ~~d~dG~l~i~GR~~d~Ik~~G~~V~p~eIE~~l~~-~p~V~~a~Vv~~~~~~~~~~~~a~vv~~~-~~~~~~l~~~l~~ 493 (563)
T 1amu_A 416 RWLSDGNIEYLGRIDNQVKIRGHRVELEEVESILLK-HMYISETAVSVHKDHQEQPYLCAYFVSEK-HIPLEQLRQFSSE 493 (563)
T ss_dssp EECTTSCEEEEEEGGGEEEETTEEEEHHHHHHHHTT-STTEEEEEEEEEECTTSCEEEEEEEEESS-CCCHHHHHHHHHH
T ss_pred EEcCCCeEEEeccccCEEEECCEEeCHHHHHHHHHh-CCCcceEEEEEeecCCCCeEEEEEEEeCC-CCCHHHHHHHHHh
Confidence 5543 43 99999999999999999999999999 9999999999884 24666665543 2344567777777
Q ss_pred HHHHhcCeeecEEEEEcCCCcccCCCchhhHHHHHHHHH
Q psy14342 265 AVLEEHHLIVGVAVVVDPGVVPINSRGEKQRMHLRDGFL 303 (316)
Q Consensus 265 ~l~~~~~~~~~~~~~~~~~~lP~t~~gKi~r~~l~~~~~ 303 (316)
.+. .+..| ..+.+++ +||+|++||++|++|++...
T Consensus 494 ~L~-~y~~P-~~i~~v~--~lP~t~~GKi~r~~L~~~~~ 528 (563)
T 1amu_A 494 ELP-TYMIP-SYFIQLD--KMPLTSNGKIDRKQLPEPDL 528 (563)
T ss_dssp HSC-GGGSC-SEEEECS--SCCBCTTSSBCGGGSCCCCC
T ss_pred hCc-hhhCC-cEEEEec--ccCCCCCcChhHHhcCCccc
Confidence 766 44444 4566655 89999999999999987543
|
| >2v7b_A Benzoate-coenzyme A ligase; benzoate oxidation, benzoate COA ligase; 1.84A {Burkholderia xenovorans} | Back alignment and structure |
|---|
Probab=100.00 E-value=9.3e-43 Score=329.14 Aligned_cols=288 Identities=17% Similarity=0.130 Sum_probs=203.0
Q ss_pred CeEEEEeccCCCCCceEEEEeHHHH-HHHHHHHHHHhcCCCCCceEEecCCcCChhhhHHHHhhhhcCceeeeeCCcccc
Q psy14342 1 MLAYLDFSVSTTGMLAGIKMSHAAV-TSLCRSMKLACELYPSRHIALCLDPYCGLGFALWVLSSVYSGHHSILIPPSEVE 79 (316)
Q Consensus 1 ~~a~i~~TSGTTG~PK~V~~t~~~l-~~~~~~~~~~~~~~~~d~~l~~~p~~h~~g~~~~~~~~l~~G~~~v~~~~~~~~ 79 (316)
|+++|+|||||||.||||++||+++ ..........+++.++|+++.++|++|.+|+...++.++..|+++++..+.
T Consensus 184 d~a~i~~TSGTTG~PKgv~~sh~~l~~~~~~~~~~~~~~~~~d~~~~~~p~~~~~g~~~~~~~~l~~G~~~v~~~~~--- 260 (529)
T 2v7b_A 184 DIAFWLYSSGSTGKPKGTVHTHANLYWTAELYAKPILGIAENDVVFSAAKLFFAYGLGNGLTFPLSVGATAILMAER--- 260 (529)
T ss_dssp SEEEEEEC-----CCCEEEEEHHHHHHHHHHTCCCCCCCCTTCEEEESSCTTSHHHHHHHTHHHHHHTCEEECCCSC---
T ss_pred CeEEEEECCCCCCCCceEEEEhhHHHHHHHHHhhhccCCCCCcEEEEeecHHHHHHHHHHHHHHHhcCcEEEEecCC---
Confidence 6899999999999999999999998 555554445577889999999999999999987678899999999987432
Q ss_pred cChHHHHHHHhccceeeEEecccchhhHHhhHHhhh---hhcccccccc-----------------cccccccchhccCC
Q psy14342 80 VNPALWLSAVSQYRVRDTFCSYGMLAGIKMSHAAVT---SLCRSMKLAC-----------------ELYPSRHIALCLDP 139 (316)
Q Consensus 80 ~~~~~~~~~~~~~~~t~~~~~~~~~~~l~~~~~~~~---~~~~~~~ls~-----------------e~~~~yG~te~~~~ 139 (316)
.++..+++.++++++|+++.+|+++..+........ ...+.+..++ .+++.||+||++..
T Consensus 261 ~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~lr~~~~gGe~l~~~~~~~~~~~~g~~i~~~YG~TE~~~~ 340 (529)
T 2v7b_A 261 PTADAIFARLVEHRPTVFYGVPTLYANMLVSPNLPARADVAIRICTSAGEALPREIGERFTAHFGCEILDGIGSTEMLHI 340 (529)
T ss_dssp CCHHHHHHHHHHSCCSEEEECHHHHHHHHTCTTCCCGGGCCCCEEEECSSCCCHHHHHHHHHHHSCCEEEEEECTTTSSE
T ss_pred CCHHHHHHHHHHhCCEEEEecHHHHHHHHhCcccccccCCceEEEEEcCCCCCHHHHHHHHHHhCCceeeeEchhhcCce
Confidence 268899999999999999999998876554322110 0011111122 28889999998643
Q ss_pred CCCCCceEEEEeeeccCcccccCCCce-EEecCc-----------eEEecC---CCcccCCCcCC----------CCcee
Q psy14342 140 YCGLGFALWVLSSVYSGHHSILIPPSE-VEVNPA-----------LWLSAV---SQYRVRDTFCS----------CNGAL 194 (316)
Q Consensus 140 ~~~~~~~~~~~~~~~~g~~~~~~~g~~-~i~d~~-----------l~v~~~---~gY~~~~~~~~----------~d~g~ 194 (316)
.....+ .....++.|.+++|++ +++|++ |+++|+ .|||++++.+. +|.|+
T Consensus 341 ~~~~~~-----~~~~~~~~G~p~~~~~~~i~d~~g~~~~~g~~GEl~v~g~~~~~gY~~~~~~t~~~f~~~~~~TGDl~~ 415 (529)
T 2v7b_A 341 FLSNRA-----GAVEYGTTGRPVPGYEIELRDEAGHAVPDGEVGDLYIKGPSAAVMYWNNREKSRATFLGEWIRSGDKYC 415 (529)
T ss_dssp EEECCT-----TCCCTTSCCEECTTCEEEEECTTSCBCCTTSCEEEEEECTTCCCCBTTCHHHHHHHEETTEEEEEEEEE
T ss_pred eecccc-----CCCccCCcccCCCCCEEEEECCCCCCCCCCCccEEEEecCCcccccCCChHHHHHhhhcCCcccCceEE
Confidence 222211 0122345566899999 888853 999999 89999876543 26666
Q ss_pred eec-Cc---CCcccceeEECCcccChHhHHHHHHHhccccceeEEEeeC----CcEEEEEEecCCchhhcchHHHHHHHH
Q psy14342 195 YQG-AE---RLALDETIMLRGMRYHPIDIENSVMRAHKKIAECAVFTWT----NLLVVVVELDGNESEALDLVPLVTNAV 266 (316)
Q Consensus 195 ~~~-g~---~GR~dd~i~~~G~~v~p~eIE~~l~~~~p~v~~~~v~~~~----~~~~~~v~~~~~~~~~~~l~~~~~~~l 266 (316)
+++ |. .||.||+||++|++|+|.|||++|.+ ||.|.+|+|++.. +.+++++++.......+.+.+++++.+
T Consensus 416 ~~~~G~l~~~GR~dd~ik~~G~~v~p~eIE~~l~~-~p~V~~~~vv~~~~~~~~~~~a~vv~~~~~~~~~~~~~~l~~~l 494 (529)
T 2v7b_A 416 RLPNGCYVYAGRSDDMLKVSGQYVSPVEVEMVLVQ-HDAVLEAAVVGVDHGGLVKTRAFVVLKREFAPSEILAEELKAFV 494 (529)
T ss_dssp ECTTSCEEEEEEGGGCBC----CBCHHHHHHHHTT-STTEEEEEEEEEEETTEEEEEEEEEECTTCCCCHHHHHHHHHHH
T ss_pred ECCCccEEEeCccCCeEEECCEEECHHHHHHHHHh-CCCcceEEEEEecCCCceEEEEEEEecCCCCcchhHHHHHHHHH
Confidence 654 43 99999999999999999999999999 9999999999982 356666666554321112333444444
Q ss_pred HH---hcCeeecEEEEEcCCCcccCCCchhhHHHHHH
Q psy14342 267 LE---EHHLIVGVAVVVDPGVVPINSRGEKQRMHLRD 300 (316)
Q Consensus 267 ~~---~~~~~~~~~~~~~~~~lP~t~~gKi~r~~l~~ 300 (316)
.+ .+..| ..+.+++ +||+|++||++|++|++
T Consensus 495 ~~~L~~~~~P-~~i~~v~--~lP~t~~GKi~r~~L~~ 528 (529)
T 2v7b_A 495 KDRLAPHKYP-RDIVFVD--DLPKTATGKIQRFKLRE 528 (529)
T ss_dssp HTTSCTTTSC-SEEEEES--CCCBCTTSCBCHHHHHC
T ss_pred HhhcchhhCC-eEEEEec--cCCCCCccchhHHhHhh
Confidence 43 33444 5666766 89999999999999985
|
| >4gr5_A Non-ribosomal peptide synthetase; MBTH-like domain, adenylation domain, ligase, rossmann fold, binding; HET: APC TLA; 1.92A {Streptomyces lydicus} PDB: 4gr4_A | Back alignment and structure |
|---|
Probab=100.00 E-value=2.7e-43 Score=335.60 Aligned_cols=291 Identities=16% Similarity=0.101 Sum_probs=139.2
Q ss_pred CeEEEEeccCCCCCceEEEEeHHHHHHHHHHHHHHhcCCCCCceEEecCCcCChhhhHHHHhhhhcCceeeeeCCccccc
Q psy14342 1 MLAYLDFSVSTTGMLAGIKMSHAAVTSLCRSMKLACELYPSRHIALCLDPYCGLGFALWVLSSVYSGHHSILIPPSEVEV 80 (316)
Q Consensus 1 ~~a~i~~TSGTTG~PK~V~~t~~~l~~~~~~~~~~~~~~~~d~~l~~~p~~h~~g~~~~~~~~l~~G~~~v~~~~~~~~~ 80 (316)
|+++|+|||||||.||||++||+++...... ...+++.++|+++.++|++|..+... ++.++..|+++++.++.. .
T Consensus 215 d~a~i~~TSGTTG~PKgV~~th~~l~~~~~~-~~~~~~~~~d~~l~~~p~~~~~~~~~-~~~~l~~G~~~v~~~~~~--~ 290 (570)
T 4gr5_A 215 DVACVMFTSGSTGRPKGVMSPHRALTGTYLG-QDYAGFGPDEVFLQCSPVSWDAFGLE-LFGALLFGARCVLQSGQN--P 290 (570)
T ss_dssp SEEEEECCSSCCSSCCCEEEEHHHHHHHHSS-CCSSCCSTTCEEEECSCTTSSTHHHH-HHHHHTTTCEEEECSSSS--C
T ss_pred CeEEEEECCcCCCCCeEEEEecHHHHHHHHh-hhhcCCCCCCEEEEecCccHHHHHHH-HHHHHhcCCEEEEcCCcc--C
Confidence 6899999999999999999999998766543 34457788999999999999877665 889999999999976543 3
Q ss_pred ChHHHHHHHhccceeeEEecccchhhHHhhHHhhhhhcccccccc------------------cccccccchhccCCCCC
Q psy14342 81 NPALWLSAVSQYRVRDTFCSYGMLAGIKMSHAAVTSLCRSMKLAC------------------ELYPSRHIALCLDPYCG 142 (316)
Q Consensus 81 ~~~~~~~~~~~~~~t~~~~~~~~~~~l~~~~~~~~~~~~~~~ls~------------------e~~~~yG~te~~~~~~~ 142 (316)
+|..+++.++++++|+++.+|+++..+...........+.+-.++ .+++.||+||++.....
T Consensus 291 ~~~~~~~~i~~~~vt~~~~~P~~~~~l~~~~~~~~~~lr~~~~gG~~l~~~~~~~~~~~~~~~~l~~~YG~TE~~~~~~~ 370 (570)
T 4gr5_A 291 DPLEIGELVARHGVTMLQLSASLFNFLVDEVPEAFEGVRYAITGGEPASVPHVAKARRDHPALRLGNGYGPAESMGFTTH 370 (570)
T ss_dssp CHHHHHHHHHHHTCCEEEEEHHHHHHHHHHCGGGGTTCSEEEEESSCCCHHHHHHHHHHCTTCEEEEEECCGGGCSCSEE
T ss_pred CHHHHHHHHHHcCCcEEEecHHHHHHHHhhchhhCCCceEEEEecccCCHHHHHHHHHhCCCcEEEEeechhhheeeeee
Confidence 788999999999999999999988766543222111111111122 27789999998653321
Q ss_pred CCceEEEEeeeccCcccccCCCce-EEecCc-----------eEEecC---CCcccCCCcCCC-----------------
Q psy14342 143 LGFALWVLSSVYSGHHSILIPPSE-VEVNPA-----------LWLSAV---SQYRVRDTFCSC----------------- 190 (316)
Q Consensus 143 ~~~~~~~~~~~~~g~~~~~~~g~~-~i~d~~-----------l~v~~~---~gY~~~~~~~~~----------------- 190 (316)
..... ........+.|.|++|++ +++|++ |+++|+ .|||++++.+..
T Consensus 371 ~~~~~-~~~~~~~~~iG~p~~~~~v~i~d~~~~~~~~G~~GEl~v~g~~v~~GY~~~~~~t~~~f~~~~~~~~~~~~w~~ 449 (570)
T 4gr5_A 371 HAVVA-GDLSGTALPIGVPLAGKRAYVLDDDLKPAANGALGELYVAGAGLAHGYVSRPALTAERFVADPFAGPGGERMYR 449 (570)
T ss_dssp EECCG-GGTTSSSCCCBEECTTEEEEEECTTSCBCCTTCEEEEEEEETTCCCEETTCHHHHHHHEEECTTCCSSCCEEEE
T ss_pred eeecc-cccCCCccccceeeCCCEEEEECCCCCCCCCCCcEEEEEeecccchhcCCCchhhhcccccCCCCCCCCCEEEe
Confidence 11000 000011124566899999 888864 999999 999998765421
Q ss_pred --Cceeeec-Cc---CCcccceeEECCcccChHhHHHHHHHhccccceeEEEeeC-----CcEEEEEEecCC--chhhcc
Q psy14342 191 --NGALYQG-AE---RLALDETIMLRGMRYHPIDIENSVMRAHKKIAECAVFTWT-----NLLVVVVELDGN--ESEALD 257 (316)
Q Consensus 191 --d~g~~~~-g~---~GR~dd~i~~~G~~v~p~eIE~~l~~~~p~v~~~~v~~~~-----~~~~~~v~~~~~--~~~~~~ 257 (316)
|.|++++ |. +||.||+||++|+||+|.|||++|.+ ||.|.+|+|++.. +.++++++.... ..+.++
T Consensus 450 TGDlg~~d~dG~l~~~GR~~d~Ik~~G~~v~p~eIE~~l~~-~p~V~~a~Vv~~~~~~~~~~~~a~vv~~~~~~~~~~~~ 528 (570)
T 4gr5_A 450 TGDLARRRADGVLEYVGRADDQVKIRGFRVEPGEVEARLVG-HPAVRQAAVLAQDSRLGDKQLVAYVVAERADAPPDAAE 528 (570)
T ss_dssp EEEEEEECTTSCEEEEEC--------------------------------------------------------------
T ss_pred CCCeEEECCCCeEEEEcccCCEEEECcEEeCHHHHHHHHhc-CCCcceEEEEEeeCCCCCeEEEEEEEecCCCCCcCHHH
Confidence 4455543 43 99999999999999999999999999 9999999999873 356666655432 234467
Q ss_pred hHHHHHHHHHHhcCeeecEEEEEcCCCcccCCCchhhHHHHHHH
Q psy14342 258 LVPLVTNAVLEEHHLIVGVAVVVDPGVVPINSRGEKQRMHLRDG 301 (316)
Q Consensus 258 l~~~~~~~l~~~~~~~~~~~~~~~~~~lP~t~~gKi~r~~l~~~ 301 (316)
+.+.+++.+. .+..| ..+.++ ++||+|++||++|++|++.
T Consensus 529 l~~~l~~~l~-~~~~P-~~i~~v--~~lP~t~~GKi~R~~L~~~ 568 (570)
T 4gr5_A 529 LRRHVAEALP-AYMVP-VECVPV--DELPRTPNGKLDRRALTGS 568 (570)
T ss_dssp --------------------------------------------
T ss_pred HHHHHHhhCc-cccCC-cEEEEc--ccCCCCCCcCcchHhhhcc
Confidence 7888887776 45444 344444 4899999999999999864
|
| >3ivr_A Putative long-chain-fatty-acid COA ligase; structural genomics, PSI-2, protein S initiative, fatty acid synthesis; HET: GOL; 2.00A {Rhodopseudomonas palustris} SCOP: e.23.1.0 | Back alignment and structure |
|---|
Probab=100.00 E-value=6.4e-43 Score=328.77 Aligned_cols=289 Identities=14% Similarity=0.074 Sum_probs=137.4
Q ss_pred CeEEEEeccCCCCCceEEEEeHHHHHHHHHHHHHHhcCCCCCceEEecCCcCChhhhHHHHhhhhcCceeeeeCCccccc
Q psy14342 1 MLAYLDFSVSTTGMLAGIKMSHAAVTSLCRSMKLACELYPSRHIALCLDPYCGLGFALWVLSSVYSGHHSILIPPSEVEV 80 (316)
Q Consensus 1 ~~a~i~~TSGTTG~PK~V~~t~~~l~~~~~~~~~~~~~~~~d~~l~~~p~~h~~g~~~~~~~~l~~G~~~v~~~~~~~~~ 80 (316)
|+++|+|||||||.||||+++|+++...+......+++.++|+++.++|++|++|+...++..+..|+ +++... .
T Consensus 161 d~a~i~~TSGTTG~PKgV~~sh~~l~~~~~~~~~~~~~~~~d~~l~~~p~~~~~g~~~~~~~~~~~g~-~~~~~~----~ 235 (509)
T 3ivr_A 161 DGFVIIHTAAVGGRPRGALISQGNLLIAQSSLVDAWRLTEADVNLGMLPLFHVTGLGLMLTLQQAGGA-SVIAAK----F 235 (509)
T ss_dssp SEEEEEEEEC--CCEEEEEEEHHHHHHHHHHHHHHTTCCTTCEEEECSCTTSHHHHHHHHHHHHHTCE-EEECSS----C
T ss_pred ccEEEEeCCCCCCCCcEEEEehHHHHHHHHHHHHhhCCCCCcEEEEeCCCcchhHHHHHHHHHHhCCc-EEEecc----c
Confidence 68999999999999999999999999999998999999999999999999999999874444444454 444432 2
Q ss_pred ChHHHHHHHhccceeeEEecccchhhHHhhHHhhh-hhcccccccc---------------cccccccchhccCCCCCCC
Q psy14342 81 NPALWLSAVSQYRVRDTFCSYGMLAGIKMSHAAVT-SLCRSMKLAC---------------ELYPSRHIALCLDPYCGLG 144 (316)
Q Consensus 81 ~~~~~~~~~~~~~~t~~~~~~~~~~~l~~~~~~~~-~~~~~~~ls~---------------e~~~~yG~te~~~~~~~~~ 144 (316)
+|..+++.++++++|+++.+|+++..+........ ...+.+-..+ .+++.||+||++.......
T Consensus 236 ~~~~~~~~i~~~~~t~~~~~p~~~~~l~~~~~~~~l~~lr~~~~~g~~~~~~~~~~~~~~~~~~~~YG~TE~~~~~~~~~ 315 (509)
T 3ivr_A 236 DPAQAARDIEAHKVTVMAEFAPMLGNILDQAAPAQLASLRAVTGLDTPETIERFEATCPNATFWATFGQSETSGLSTFAP 315 (509)
T ss_dssp CHHHHHHHHHHHTCCEEEEETTHHHHHHHHCCGGGGTTCCEEEEECCHHHHHHHHHHCTTCEEEEEEEEGGGTEEEEEEE
T ss_pred CHHHHHHHHHHHCCcEEEecHHHHHHHHhcccccchhhhheecccCChHHHHHHHHhcCCCeEEcccCccccccccccCc
Confidence 78999999999999999999999876654331111 0011111111 3888999999964321111
Q ss_pred ceEEEEeeeccCcccccCCCce-EEecCc-----------eEEecC---CCcccCCCcCC----------CCceeeec-C
Q psy14342 145 FALWVLSSVYSGHHSILIPPSE-VEVNPA-----------LWLSAV---SQYRVRDTFCS----------CNGALYQG-A 198 (316)
Q Consensus 145 ~~~~~~~~~~~g~~~~~~~g~~-~i~d~~-----------l~v~~~---~gY~~~~~~~~----------~d~g~~~~-g 198 (316)
. .....+.|.|++|++ +++|++ |+++|+ .|||++++.+. +|.|++++ |
T Consensus 316 ~------~~~~~~~G~p~~~~~~~i~d~~~~~~~~g~~GEl~v~g~~~~~gY~~~~~~t~~~f~~g~~~TGDl~~~~~dG 389 (509)
T 3ivr_A 316 Y------RDRPKSAGRPLFWRTVAVVDAEDRPLPPGEVGEIVLRGPTVFKGYWNNAAATQHAFRNGWHHTGDMGRFDADG 389 (509)
T ss_dssp G------GGSTTSCCEECTTCEEEEECTTSCBCCTTCCEEEEEESTTSCCEETTCHHHHHHHTGGGSEEEEEEEEECTTS
T ss_pred c------ccCCCcccccCCCcEEEEECCCCCCCCCCCceEEEEecCCccccccCCHHHhHHHhhcCCcccccEEEECCCc
Confidence 0 011123455899999 888864 999999 89999987653 26666654 4
Q ss_pred c---CCcc--cceeEECCcccChHhHHHHHHHhccccceeEEEeeC-----CcEEEEEEecCCc-hhhcchHHHHHHHHH
Q psy14342 199 E---RLAL--DETIMLRGMRYHPIDIENSVMRAHKKIAECAVFTWT-----NLLVVVVELDGNE-SEALDLVPLVTNAVL 267 (316)
Q Consensus 199 ~---~GR~--dd~i~~~G~~v~p~eIE~~l~~~~p~v~~~~v~~~~-----~~~~~~v~~~~~~-~~~~~l~~~~~~~l~ 267 (316)
. .||. ||+||++|++|+|.|||++|.+ ||.|.+|+|++.. +.++++++..+.. .+.+++.+.+++.+.
T Consensus 390 ~l~~~GR~d~~d~ik~~G~~v~p~eiE~~l~~-~p~V~~a~vv~~~~~~~~~~~~a~v~~~~~~~~~~~~l~~~l~~~L~ 468 (509)
T 3ivr_A 390 YLFYAGRAPEKELIKTGGENVYPAEVEGALKQ-HPAIADAVVIGVPDPQWSEAIKAVCVCKPGESIAADALAEFVASLIA 468 (509)
T ss_dssp CEEEEEEC------------------------------------------------------------------------
T ss_pred eEEEeCCCCcceeEEECCEEECHHHHHHHHHh-CCCceeEEEEeccccccCcEEEEEEEeCCCCCCCHHHHHHHHHhhCc
Confidence 3 9999 9999999999999999999999 9999999999884 3466666655432 344678888888877
Q ss_pred HhcCeeecEEEEEcCCCcccCCCchhhHHHHHHHHHcC
Q psy14342 268 EEHHLIVGVAVVVDPGVVPINSRGEKQRMHLRDGFLAD 305 (316)
Q Consensus 268 ~~~~~~~~~~~~~~~~~lP~t~~gKi~r~~l~~~~~~~ 305 (316)
.+..| ..+.+++ +||+|++||++|++|++.+.+.
T Consensus 469 -~~~~P-~~i~~v~--~lP~t~~GKidr~~Lr~~~~~~ 502 (509)
T 3ivr_A 469 -RYKKP-KHVVFVE--ALPKDAKGAIDRAAVKTAHGQE 502 (509)
T ss_dssp --------------------------------------
T ss_pred -ccCCC-cEEEEec--CCCCCCCCCccHHHHHHHHhhc
Confidence 45554 3555554 8999999999999999988763
|
| >3rg2_A Enterobactin synthase component E (ENTE), 2,3-DIH dihydroxybenzoate synthetase, isochroismatase...; adenylate-forming enzymes, ANL superfamily; HET: SVS PNS; 3.10A {Escherichia coli} | Back alignment and structure |
|---|
Probab=100.00 E-value=1e-41 Score=327.54 Aligned_cols=290 Identities=14% Similarity=0.124 Sum_probs=216.4
Q ss_pred CeEEEEeccCCCCCceEEEEeHHHHHHHHHHHHHHhcCCCCCceEEecCCcCChhhhH-HHHhhhhcCceeeeeCCcccc
Q psy14342 1 MLAYLDFSVSTTGMLAGIKMSHAAVTSLCRSMKLACELYPSRHIALCLDPYCGLGFAL-WVLSSVYSGHHSILIPPSEVE 79 (316)
Q Consensus 1 ~~a~i~~TSGTTG~PK~V~~t~~~l~~~~~~~~~~~~~~~~d~~l~~~p~~h~~g~~~-~~~~~l~~G~~~v~~~~~~~~ 79 (316)
|+|||+|||||||.||||+++|+++...+......+++.++|+++.++|++|.+++.. .++.++..|+++++.+..
T Consensus 185 ~~a~ii~TSGSTG~PKgV~~th~~~~~~~~~~~~~~~~~~~~~~l~~~p~~~~~~~~~~~~~~~l~~G~~~v~~~~~--- 261 (617)
T 3rg2_A 185 EVAYFQLSGGTTGTPKLIPRTHNDYYYSVRRSVEICQFTQQTRYLCAIPAAHNYAMSSPGSLGVFLAGGTVVLAADP--- 261 (617)
T ss_dssp SEEEEEECCCSSSSCCEEEEEHHHHHHHHHHHHHHHTCCTTCEEEECSCTTSHHHHHSSHHHHHHHHTCEEEECSSC---
T ss_pred CeEEEEECCCcCCCCCEeehhHHHHHHHHHHHHHhcCCCCcceEEEeccchhhhhhhHHHHHHHHHcCCEEEEeCCC---
Confidence 5899999999999999999999999999999899999999999999999999988864 478999999999997643
Q ss_pred cChHHHHHHHhccceeeEEecccchhhHHhhHHhhh-----hhcccccccc-----------------cccccccchhcc
Q psy14342 80 VNPALWLSAVSQYRVRDTFCSYGMLAGIKMSHAAVT-----SLCRSMKLAC-----------------ELYPSRHIALCL 137 (316)
Q Consensus 80 ~~~~~~~~~~~~~~~t~~~~~~~~~~~l~~~~~~~~-----~~~~~~~ls~-----------------e~~~~yG~te~~ 137 (316)
++..+++.+++++++++..+|+.+..+........ ...+.+-.++ .+++.||+||++
T Consensus 262 -~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~l~~lr~i~~gGe~l~~~~~~~~~~~~~~~~~~~YG~tE~~ 340 (617)
T 3rg2_A 262 -SATLCFPLIEKHQVNVTALVPPAVSLWLQALIEGESRAQLASLKLLQVGGARLSATLAARIPAEIGCQLQQVFGMAEGL 340 (617)
T ss_dssp -CHHHHHHHHHHTTCCEEEECHHHHHHHHHHHHTTCCTTTTTTCCEEEEESSCCCHHHHHHHHHHTCSEEEEEEEETTEE
T ss_pred -CHHHHHHHHHHhCCcEEEcchHHHHHHHHhhhcccccccCCCccEEEEcCCcCCHHHHHHHHHHhCCcEEEEeccCcce
Confidence 67889999999999999999998876554332211 0011122222 278899999986
Q ss_pred CCCCCCCceEEEEeeeccCcccccC-CCce-EEecCc-----------eEEecC---CCcccCCCcCCC-----------
Q psy14342 138 DPYCGLGFALWVLSSVYSGHHSILI-PPSE-VEVNPA-----------LWLSAV---SQYRVRDTFCSC----------- 190 (316)
Q Consensus 138 ~~~~~~~~~~~~~~~~~~g~~~~~~-~g~~-~i~d~~-----------l~v~~~---~gY~~~~~~~~~----------- 190 (316)
......... .....++.+.|+ ++.+ .++|++ |+++|+ .|||++++.+..
T Consensus 341 ~~~~~~~~~----~~~~~~~~G~p~~~~~~~~i~d~~~~~~p~G~~GEl~i~G~~v~~GY~~~p~~t~~~f~~~~~yrTG 416 (617)
T 3rg2_A 341 VNYTRLDDS----AEKIIHTQGYPMCPDDEVWVADAEGNPLPQGEVGRLMTRGPYTFRGYYKSPQHNASAFDANGFYCSG 416 (617)
T ss_dssp EEECCTTSC----HHHHHHCCCEESCTTCEEEEECTTSCBCCTTCCEEEEEECSSSCSCCTTCHHHHHHHBCTTSCEEEE
T ss_pred eecccCCCc----ccccccCCCccCCCCceEEEECCCCCCCCCCCceEEEecCccccchhcCChhhhhhccCCCCceecC
Confidence 433221110 000111333455 6667 787764 999999 999999776532
Q ss_pred Cceeeec-Cc---CCcccceeEECCcccChHhHHHHHHHhccccceeEEEeeC-----CcEEEEEEecCCchhhcchHHH
Q psy14342 191 NGALYQG-AE---RLALDETIMLRGMRYHPIDIENSVMRAHKKIAECAVFTWT-----NLLVVVVELDGNESEALDLVPL 261 (316)
Q Consensus 191 d~g~~~~-g~---~GR~dd~i~~~G~~v~p~eIE~~l~~~~p~v~~~~v~~~~-----~~~~~~v~~~~~~~~~~~l~~~ 261 (316)
|.|++++ |. +||.||+||++|+||+|.|||++|.+ ||.|.+|+|++.. +.++++++... ..+.+++.+.
T Consensus 417 Dl~~~~~dG~l~~~GR~dd~iki~G~ri~~~eIE~~l~~-~p~V~~a~vv~~~~~~~~~~~~a~vv~~~-~~~~~~l~~~ 494 (617)
T 3rg2_A 417 DLISIDPEGYITVQGREKDQINRGGEKIAAEEIENLLLR-HPAVIYAALVSMEDELMGEKSCAYLVVKE-PLRAVQVRRF 494 (617)
T ss_dssp EEEEECTTSCEEEEEECSSEEEETTEEEEHHHHHHHHTT-STTEEEEEEEEEEETTTEEEEEEEEEESS-CCCHHHHHHH
T ss_pred ceEEEcCCceEEEEeecCCEEEECCEEeCHHHHHHHHHh-CCCeeEEEEEeccCcccCeeEEEEEEeCC-CCCHHHHHHH
Confidence 5666643 43 99999999999999999999999999 9999999999873 35666666654 3334556666
Q ss_pred HHH-HHHHhcCeeecEEEEEcCCCcccCCCchhhHHHHHHHHHc
Q psy14342 262 VTN-AVLEEHHLIVGVAVVVDPGVVPINSRGEKQRMHLRDGFLA 304 (316)
Q Consensus 262 ~~~-~l~~~~~~~~~~~~~~~~~~lP~t~~gKi~r~~l~~~~~~ 304 (316)
+++ .+. .+..| ..+.++ ++||+|++||++|++|++.+.+
T Consensus 495 l~~~~lp-~~~vP-~~~~~v--~~lP~t~~GKidR~~L~~~~~~ 534 (617)
T 3rg2_A 495 LREQGIA-EFKLP-DRVECV--DSLPLTAVGKVDKKQLRQWLAS 534 (617)
T ss_dssp HHTTTCC-GGGSC-SEEEEC--SCCCBCTTSSBCHHHHHHHHHH
T ss_pred HHhCCCc-cccCC-cEEEEe--cccCCCCCCCCcHHHHHHHHhc
Confidence 655 233 34443 455555 4999999999999999988764
|
| >3tsy_A Fusion protein 4-coumarate--COA ligase 1, resvera synthase; transferase; 3.10A {Arabidospis thaliana} | Back alignment and structure |
|---|
Probab=100.00 E-value=5e-42 Score=345.45 Aligned_cols=296 Identities=17% Similarity=0.161 Sum_probs=145.9
Q ss_pred CeEEEEeccCCCCCceEEEEeHHHHHHHHHHHHH----HhcCCCCCceEEecCCcCChhhhHHHHhhhhcCceeeeeCCc
Q psy14342 1 MLAYLDFSVSTTGMLAGIKMSHAAVTSLCRSMKL----ACELYPSRHIALCLDPYCGLGFALWVLSSVYSGHHSILIPPS 76 (316)
Q Consensus 1 ~~a~i~~TSGTTG~PK~V~~t~~~l~~~~~~~~~----~~~~~~~d~~l~~~p~~h~~g~~~~~~~~l~~G~~~v~~~~~ 76 (316)
|+++|+|||||||.||||+++|+++...+..... .+++.++|+++.++|++|.+++...++.++..|+++++.++.
T Consensus 226 d~a~i~~TSGTTG~PKgV~~sh~~l~~~~~~~~~~~~~~~~~~~~d~~l~~~p~~h~~~~~~~~~~~l~~G~~~v~~~~~ 305 (979)
T 3tsy_A 226 DVVALPYSSGTTGLPKGVMLTHKGLVTSVAQQVDGENPNLYFHSDDVILCVLPMFHIYALNSIMLCGLRVGAAILIMPKF 305 (979)
T ss_dssp SEEECCBCCCSSSSCCBEEEEHHHHHHHHHHHHCSSSCSSCCCSSCEEEECSCSSSHHHHHHTHHHHHHHTCEEEECSSC
T ss_pred ceEEEEeCCCCCCCCeEEEechHHHHHHHHHHHHhhcccccCCCCCEEEEECchHHHHHHHHHHHHHHhcCcEEEEeCCC
Confidence 6899999999999999999999999887765543 345778999999999999999987788999999999997643
Q ss_pred ccccChHHHHHHHhccceeeEEecccchhhHHhhHHhhhh---hcccccccc------------------cccccccchh
Q psy14342 77 EVEVNPALWLSAVSQYRVRDTFCSYGMLAGIKMSHAAVTS---LCRSMKLAC------------------ELYPSRHIAL 135 (316)
Q Consensus 77 ~~~~~~~~~~~~~~~~~~t~~~~~~~~~~~l~~~~~~~~~---~~~~~~ls~------------------e~~~~yG~te 135 (316)
++..+++.++++++|+++.+|+++..+......... ..+.+..++ .+++.||+||
T Consensus 306 ----~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~l~~lr~~~~gg~~l~~~~~~~~~~~~~~~~l~~~YG~TE 381 (979)
T 3tsy_A 306 ----EINLLLELIQRCKVTVAPMVPPIVLAIAKSSETEKYDLSSIRVVKSGAAPLGKELEDAVNAKFPNAKLGQGYGMTE 381 (979)
T ss_dssp ----CHHHHHHHHHHHTCCEEEECHHHHHHHHHCGGGGTSCCTTCCEEEESSCCCCSSHHHHHHHHCTTCEEEECEECGG
T ss_pred ----CHHHHHHHHHHhCCeEEEcHHHHHHHHHhCccccCCCccceEEEEEcCCCCCHHHHHHHHHHCCCCeEEeeechhh
Confidence 678999999999999999999988766544332110 011111111 2788999999
Q ss_pred ccCCCCCCCceEEEEeeeccCcccccCCCce-EEecCc------------eEEecC---CCcccCCCcCCC---------
Q psy14342 136 CLDPYCGLGFALWVLSSVYSGHHSILIPPSE-VEVNPA------------LWLSAV---SQYRVRDTFCSC--------- 190 (316)
Q Consensus 136 ~~~~~~~~~~~~~~~~~~~~g~~~~~~~g~~-~i~d~~------------l~v~~~---~gY~~~~~~~~~--------- 190 (316)
++..................++.|.+++|++ +++|++ |+++|+ .|||++++.+..
T Consensus 382 ~~~~~~~~~~~~~~~~~~~~~~~G~p~~~~~~~i~d~~~~~~~~~g~~GEl~i~g~~v~~GY~~~p~~t~~~f~~~g~~~ 461 (979)
T 3tsy_A 382 AGPVLAMSLGFAKEPFPVKSGACGTVVRNAEMKIVDPDTGDSLSRNQPGEICIRGHQIMKGYLNNPAATAETIDKDGWLH 461 (979)
T ss_dssp GCSEEEECGGGSSSCCCCCTTCCCEECSSCEEEEECTTSCCBCCTTCCEEEEEESTTSCSEETTCHHHHHHHBCTTSCEE
T ss_pred hhHHHHhCCCCCCCccccCCCCcCcccCCcEEEEEeCCCCCCCCCCCccEEEEECCCccccccCChhhhhhhccCCCcEE
Confidence 9743221100000001122334566899999 998843 999999 899998766532
Q ss_pred --Cceeeec-Cc---CCcccceeEECCcccChHhHHHHHHHhccccceeEEEeeC-----CcEEEEEEecCC-chhhcch
Q psy14342 191 --NGALYQG-AE---RLALDETIMLRGMRYHPIDIENSVMRAHKKIAECAVFTWT-----NLLVVVVELDGN-ESEALDL 258 (316)
Q Consensus 191 --d~g~~~~-g~---~GR~dd~i~~~G~~v~p~eIE~~l~~~~p~v~~~~v~~~~-----~~~~~~v~~~~~-~~~~~~l 258 (316)
|.|++++ |. +||.||+||++|++|+|.|||++|.+ ||.|.+|+|++.. +.++++++..+. ..+.+++
T Consensus 462 TGDl~~~~~dG~l~~~GR~dd~ik~~G~~v~~~eIE~~l~~-~p~V~~~~Vv~~~~~~~g~~~~a~vv~~~~~~~~~~~l 540 (979)
T 3tsy_A 462 TGDIGLIDDDDELFIVDRLKELIKYKGFQVAPAELEALLIG-HPDITDVAVVAMKEEAAGEVPVAFVVKSKDSELSEDDV 540 (979)
T ss_dssp EEEEEEECTTSCEEEEEESCC-----------------------------------------------------------
T ss_pred cCCEEEEcCCceEEEecCCCCEEEECCEEECHHHHHHHHHh-CCCcceEEEEEecccCCCcEEEEEEEECCCCCCCHHHH
Confidence 5555554 43 99999999999999999999999999 9999999999873 356666655443 2344677
Q ss_pred HHHHHHHHHHhcCeeecEEEEEcCCCcccCCCchhhHHHHHHHHHcC
Q psy14342 259 VPLVTNAVLEEHHLIVGVAVVVDPGVVPINSRGEKQRMHLRDGFLAD 305 (316)
Q Consensus 259 ~~~~~~~l~~~~~~~~~~~~~~~~~~lP~t~~gKi~r~~l~~~~~~~ 305 (316)
.+++++.+. .+..| ..+.+++ +||+|++||++|++|++.+.++
T Consensus 541 ~~~l~~~l~-~~~~p-~~i~~v~--~lP~t~~GKi~r~~L~~~~~~~ 583 (979)
T 3tsy_A 541 KQFVSKQVV-FYKRI-NKVFFTE--SIPKAPSGKILRKDLRAKLANG 583 (979)
T ss_dssp -----------------------------------------------
T ss_pred HHHHHHhcc-cccCC-eEEEEeC--CcCcCCCCCeeHHHHHHHHHhh
Confidence 888887777 45444 3455544 8999999999999999998874
|
| >2vsq_A Surfactin synthetase subunit 3; ligase, peptidyl carrier protein, ligase phosphoprotein, TER module, phosphopantetheine; 2.60A {Bacillus subtilis} | Back alignment and structure |
|---|
Probab=100.00 E-value=6.1e-40 Score=338.24 Aligned_cols=292 Identities=13% Similarity=0.053 Sum_probs=216.2
Q ss_pred CeEEEEeccCCCCCceEEEEeHHHHHHHHHHHHHHhcCCCCCceEEecCCcCChhhhHHHHhhhhcCceeeeeCCccccc
Q psy14342 1 MLAYLDFSVSTTGMLAGIKMSHAAVTSLCRSMKLACELYPSRHIALCLDPYCGLGFALWVLSSVYSGHHSILIPPSEVEV 80 (316)
Q Consensus 1 ~~a~i~~TSGTTG~PK~V~~t~~~l~~~~~~~~~~~~~~~~d~~l~~~p~~h~~g~~~~~~~~l~~G~~~v~~~~~~~~~ 80 (316)
|+|||+|||||||.||||+++|+++.+. ......+++.++|+++.+.|++|+.+.+. ++.++..|+++++.++.. ..
T Consensus 608 ~~ayiiyTSGSTG~PKgV~~~h~~l~~~-~~~~~~~~~~~~d~~l~~~~~~fd~~~~~-~~~~l~~G~~l~~~~~~~-~~ 684 (1304)
T 2vsq_A 608 DPAYIMYTSGTTGKPKGNITTHANIQGL-VKHVDYMAFSDQDTFLSVSNYAFDAFTFD-FYASMLNAARLIIADEHT-LL 684 (1304)
T ss_dssp SEEEEEEECCSSSSCEEEEEEHHHHHHH-HSSCCSSCCCTTCEEEECSCTTSTHHHHH-HHHHHTTTCEEEECCGGG-TT
T ss_pred CeEEEEeCCCCCCCCCEEEEehHHHHHH-HHHHHhcCCCCCCEEEEECCccHHHHHHH-HHHHHHcCCEEEECChhh-cC
Confidence 5899999999999999999999998865 33344577888999999999999988766 899999999999987653 45
Q ss_pred ChHHHHHHHhccceeeEEecccchhhHHhhHHhhhhhcccccccc------------------cccccccchhccCCCCC
Q psy14342 81 NPALWLSAVSQYRVRDTFCSYGMLAGIKMSHAAVTSLCRSMKLAC------------------ELYPSRHIALCLDPYCG 142 (316)
Q Consensus 81 ~~~~~~~~~~~~~~t~~~~~~~~~~~l~~~~~~~~~~~~~~~ls~------------------e~~~~yG~te~~~~~~~ 142 (316)
+|..+++.++++++|+++.+|+++..+...........+.+-+++ .+++.||+||++.....
T Consensus 685 ~~~~l~~~i~~~~vt~~~~~p~~~~~l~~~~~~~~~~lr~~~~gGe~l~~~~~~~~~~~~~~~~l~n~YG~TE~~~~~~~ 764 (1304)
T 2vsq_A 685 DTERLTDLILQENVNVMFATTALFNLLTDAGEDWMKGLRCILFGGERASVPHVRKALRIMGPGKLINCYGPTEGTVFATA 764 (1304)
T ss_dssp CHHHHHHHHHHHTCCEEEEEHHHHHHHHHHCSHHHHTCSEEEEESSCCCHHHHHHHHHHHCTTCEEEEECCGGGSSCSEE
T ss_pred CHHHHHHHHHHcCCcEEEccHHHHHHHHhhchhcCCCccEEEEecCCCCHHHHHHHHHhCCCCEEEEeEChhHHhHHhee
Confidence 789999999999999999999988766432211111112222222 27889999998753321
Q ss_pred CCceEEEEeeeccCcccccCCCce-EEecCc-----------eEEecC---CCcccCCCcCCC-----------------
Q psy14342 143 LGFALWVLSSVYSGHHSILIPPSE-VEVNPA-----------LWLSAV---SQYRVRDTFCSC----------------- 190 (316)
Q Consensus 143 ~~~~~~~~~~~~~g~~~~~~~g~~-~i~d~~-----------l~v~~~---~gY~~~~~~~~~----------------- 190 (316)
..... ........+.|.|++|.+ .++|++ |+++|+ .|||++++.|+.
T Consensus 765 ~~~~~-~~~~~~~~~iG~p~~~~~~~i~d~~~~~~p~G~~GEl~i~G~~v~~GY~~~p~~T~~~f~~~p~~~g~~~yrTG 843 (1304)
T 2vsq_A 765 HVVHD-LPDSISSLPIGKPISNASVYILNEQSQLQPFGAVGELCISGMGVSKGYVNRADLTKEKFIENPFKPGETLYRTG 843 (1304)
T ss_dssp EECCC-CCSSCSSCCCBEECTTEEEEEECTTSCBCCTTCCEEEEEEETTCCCCBTTCHHHHHHHEEECTTSTTCEEEEEE
T ss_pred eeccC-ccccCCCCCCceeeCCCEEEEECCCcCCCCCCCceEEEEeccccCccccCCcccchhhhccCCCCCCCeeEecC
Confidence 11000 000011225566899999 888864 999999 999998765421
Q ss_pred Cceeee-cCc---CCcccceeEECCcccChHhHHHHHHHhccccceeEEEeeC-----CcEEEEEEecCCchhhcchHHH
Q psy14342 191 NGALYQ-GAE---RLALDETIMLRGMRYHPIDIENSVMRAHKKIAECAVFTWT-----NLLVVVVELDGNESEALDLVPL 261 (316)
Q Consensus 191 d~g~~~-~g~---~GR~dd~i~~~G~~v~p~eIE~~l~~~~p~v~~~~v~~~~-----~~~~~~v~~~~~~~~~~~l~~~ 261 (316)
|.|+++ +|. +||.||+||++|+||.|.|||++|.+ ||+|.+|+|++.. +.++++++... ..+.+++.+.
T Consensus 844 Dl~~~~~dG~l~~~GR~d~qvki~G~rie~~eIE~~l~~-~p~V~~a~V~~~~~~~~~~~l~a~vv~~~-~~~~~~l~~~ 921 (1304)
T 2vsq_A 844 DLARWLPDGTIEYAGRIDDQVKIRGHRIELEEIEKQLQE-YPGVKDAVVVADRHESGDASINAYLVNRT-QLSAEDVKAH 921 (1304)
T ss_dssp EEEEECTTSCEEEEEEGGGEEEETTEEEEHHHHHHHHHH-SSSCCEEEEEEECCSSSCCEEEEEEECSS-SSCHHHHHHH
T ss_pred CeEEEcCCCeEEEEcCCCCEEEECCEeeCHHHHHHHHHh-CCCCceEEEEEEecCCCCEEEEEEEeCCC-CCCHHHHHHH
Confidence 445444 343 99999999999999999999999999 9999999999873 35677766543 3344567777
Q ss_pred HHHHHHHhcCeeecEEEEEcCCCcccCCCchhhHHHHHHHH
Q psy14342 262 VTNAVLEEHHLIVGVAVVVDPGVVPINSRGEKQRMHLRDGF 302 (316)
Q Consensus 262 ~~~~l~~~~~~~~~~~~~~~~~~lP~t~~gKi~r~~l~~~~ 302 (316)
+++.++ .+..| ..+.+++ +||+|++||++|++|.+..
T Consensus 922 l~~~Lp-~ymvP-~~~~~l~--~lP~t~~GKidR~~L~~~~ 958 (1304)
T 2vsq_A 922 LKKQLP-AYMVP-QTFTFLD--ELPLTTNGKVNKRLLPKPD 958 (1304)
T ss_dssp HHHHSC-GGGSC-SEEEEES--CCCCCSSCSSCCSCCCCCC
T ss_pred HHHhCh-Hhhhc-cEEEEec--ccCCCCCcccCHhhcCCcc
Confidence 777776 44444 4566665 8999999999999987543
|
| >3ite_A SIDN siderophore synthetase; ligase, non-ribosomal peptide synthesis, NRPS, sidna3, fungal, endophyte; HET: MSE; 2.00A {Neotyphodium lolii} | Back alignment and structure |
|---|
Probab=100.00 E-value=5.4e-40 Score=312.42 Aligned_cols=296 Identities=10% Similarity=0.043 Sum_probs=133.3
Q ss_pred CeEEEEeccCCCCCceEEEEeHHHHHHHHHHHHHH--------hcCCCCCceEEecCCcCChhhhHHHHhhhhcCceeee
Q psy14342 1 MLAYLDFSVSTTGMLAGIKMSHAAVTSLCRSMKLA--------CELYPSRHIALCLDPYCGLGFALWVLSSVYSGHHSIL 72 (316)
Q Consensus 1 ~~a~i~~TSGTTG~PK~V~~t~~~l~~~~~~~~~~--------~~~~~~d~~l~~~p~~h~~g~~~~~~~~l~~G~~~v~ 72 (316)
++++|+|||||||.||||++||+++...+...... +.+...++++.+.|+.|..++.. ++.++..|+++++
T Consensus 176 ~~a~i~~TSGTTG~PKgV~~th~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~l~~g~~~~~ 254 (562)
T 3ite_A 176 LDAYLLYTSGSTGTPKGVRVSRHNLSSFSDAWGKLIGNVAPKSLELGGVGKFLCLASRAFDVHIGE-MFLAWRFGLCAVT 254 (562)
T ss_dssp SEEEEEEECC---CCEEEEEEHHHHHHHHHHHHHHHHHHCGGGGGCTTTCEEECCSCTTSTHHHHH-HHHHHHTTCEEEE
T ss_pred CcEEEEECCCCCCCCcEEEECchhHHHHHHHHHhhhccccchhcccCcCceEEEecCchhhhhHHH-HHHHHhcccEEEe
Confidence 46999999999999999999999998877665544 34667888999999999988776 7889999999988
Q ss_pred eCCcccccChHHHHHHHhccceeeEEecccchhhHHhhHHhhhhhcccccccc-----------------cccccccchh
Q psy14342 73 IPPSEVEVNPALWLSAVSQYRVRDTFCSYGMLAGIKMSHAAVTSLCRSMKLAC-----------------ELYPSRHIAL 135 (316)
Q Consensus 73 ~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~~~l~~~~~~~~~~~~~~~ls~-----------------e~~~~yG~te 135 (316)
.+... .+..+++.++++++|+++.+|+++..+......... .+.+-.++ .+++.||+||
T Consensus 255 ~~~~~---~~~~~~~~i~~~~~t~~~~~P~~l~~~~~~~~~~~~-lr~~~~gG~~l~~~~~~~~~~~~~~~~~~~YG~TE 330 (562)
T 3ite_A 255 GERLS---MLDDLPRTFRELGVTHAGIVPSLLDQTGLVPEDAPH-LVYLGVGGEKMTPRTQQIWSSSDRVALVNVYGPTE 330 (562)
T ss_dssp CCHHH---HHHSHHHHHHHTTCCEEEECHHHHHHHTCCGGGSTT-CCEEEEESSCCCHHHHHHHTTCSSCEEEEEECCGG
T ss_pred cchhh---CHHHHHHHHHHcCCCEEEcCHHHHhhcccCccccCc-eEEEEEecCCCCHHHHHHHhhCCCcEEEEeeccch
Confidence 65332 245678999999999999999877544332222211 11111111 2788999999
Q ss_pred ccCCCCCCCceEEEEeeeccCcccccCCCce-EEecCc------------eEEecC---CCcccCCCcCCC---------
Q psy14342 136 CLDPYCGLGFALWVLSSVYSGHHSILIPPSE-VEVNPA------------LWLSAV---SQYRVRDTFCSC--------- 190 (316)
Q Consensus 136 ~~~~~~~~~~~~~~~~~~~~g~~~~~~~g~~-~i~d~~------------l~v~~~---~gY~~~~~~~~~--------- 190 (316)
++........ ......++.|.|+++.+ +++|++ |+++|+ .|||++++.+..
T Consensus 331 ~~~~~~~~~~----~~~~~~~~~G~p~~~~~~~i~d~~~~~~~~~g~~GEl~v~g~~v~~GY~~~p~~t~~~~~~g~~w~ 406 (562)
T 3ite_A 331 VTIGCSAGRI----LPDSDTRCIGHPLGDSVAHVLAPGSNEHVKKGMAGELVIEGSLVANGYLNRPDAKGFCDINGRKMY 406 (562)
T ss_dssp GCSCSEEEEC----CTTSCTTEEEEECTTCEEEEECTTSSCBCCTTSCEEEEEESTTSCCEESSCTTCCSEEEETTEEEE
T ss_pred heeeeeeeee----cCCCCCccccccCCCCeEEEEeCCCCCCCCCCCceEEEEeccccchhhCCCccccccccCCCCEEE
Confidence 8643221110 00011223455899999 888753 999999 899999877642
Q ss_pred ---Cceeeec-Cc---CCcccceeEECCcccChHhHHHHHHHhc-cccceeEEEeeC-----CcEEEEEEecC-Cchh--
Q psy14342 191 ---NGALYQG-AE---RLALDETIMLRGMRYHPIDIENSVMRAH-KKIAECAVFTWT-----NLLVVVVELDG-NESE-- 254 (316)
Q Consensus 191 ---d~g~~~~-g~---~GR~dd~i~~~G~~v~p~eIE~~l~~~~-p~v~~~~v~~~~-----~~~~~~v~~~~-~~~~-- 254 (316)
|.|++++ |. +||.||+||++|+||+|.|||++|.+ | |.+.+++|++.. +..++.+.... ....
T Consensus 407 ~TGDlg~~d~dG~l~~~GR~dd~Ik~~G~~v~p~eIE~~l~~-~~~~~~~~~v~~~~~~~~~~~~~~~~v~~~~~~~~~~ 485 (562)
T 3ite_A 407 RTGDIVRMDADSSILFLGRKDEQVKVRGQRLELGEVSEVIRS-LSPTDIDVVTLLLNHPGTSKQFLVSFVASSGAAVRGE 485 (562)
T ss_dssp EEEEEEEECTTSCEEEEEEC------------------------------------------------------------
T ss_pred ecCCEEEEcCCCeEEEEccccCEEeECcEEECHHHHHHHHHh-cCCCceeEEEEEecCCCCcceEEEEEEeccccccccc
Confidence 4555543 43 99999999999999999999999999 7 888888888763 23333322221 1111
Q ss_pred -----------hcchHHHHHHHHHHhcCeeecEEEEEcCCCcccC-CCchhhHHHHHHHHHcCCCCcc
Q psy14342 255 -----------ALDLVPLVTNAVLEEHHLIVGVAVVVDPGVVPIN-SRGEKQRMHLRDGFLADQLDPI 310 (316)
Q Consensus 255 -----------~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~lP~t-~~gKi~r~~l~~~~~~~~~~~~ 310 (316)
.+++.+++++++. .+..| ..+.+++ +||+| ++||++|++|++.+.+-..+.+
T Consensus 486 ~~~~~~~~~~~~~~l~~~~~~~L~-~y~~P-~~i~~v~--~lP~t~~~GKi~r~~L~~~~~~~~~~~~ 549 (562)
T 3ite_A 486 LRWINENYKEINNSLRQACEQTLP-AYMVP-DFIIPIS--FIPLRDTSAKTDAKALEHMFHTLSLGEL 549 (562)
T ss_dssp --------------------------------------------------------------------
T ss_pred ccccccchhhHHHHHHHHHHhhCC-cccCC-cEEEEec--cCCCCCCCCcchHHHHHHHHhccCHHHH
Confidence 1356666666666 44444 3455555 89998 9999999999999887544433
|
| >3qov_A Phenylacetate-coenzyme A ligase; acetyl-COA synthetase-like, structural genomics, joint cente structural genomics, JCSG; HET: MSE ADP COA; 2.20A {Bacteroides thetaiotaomicron} PDB: 3s89_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=3.7e-36 Score=277.49 Aligned_cols=281 Identities=12% Similarity=0.089 Sum_probs=199.4
Q ss_pred CeEEEEeccCCCCCceEEEEeHHHHHHHHHHHHH---HhcCCCCCceEEecCCcCChhhhHHHHhhhhcCceeeeeCCcc
Q psy14342 1 MLAYLDFSVSTTGMLAGIKMSHAAVTSLCRSMKL---ACELYPSRHIALCLDPYCGLGFALWVLSSVYSGHHSILIPPSE 77 (316)
Q Consensus 1 ~~a~i~~TSGTTG~PK~V~~t~~~l~~~~~~~~~---~~~~~~~d~~l~~~p~~h~~g~~~~~~~~l~~G~~~v~~~~~~ 77 (316)
|+++|+|||||||.||+|++||+++...+..+.. .+++.++|+++.++|+.|..+.+..++.++..|+++++.++.
T Consensus 87 ~~a~i~~TSGTTG~PK~v~~th~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~l~~G~~~~~~~~~- 165 (436)
T 3qov_A 87 DGVRIHSSSGTTGNPTVIVHSQHDLDSWANLVARCLYMVGIRKTDVFQNSSGYGMFTGGLGFQYGAERLGCLTVPAAAG- 165 (436)
T ss_dssp HEEEEEECSCSSSCCCEEEEEHHHHHHHHHHHHHHHHHTTCCTTSEEEECSCCTTCHHHHHHHHHHHHHTCEEECCCSC-
T ss_pred CeEEEEECCCcCCCCeEEEECHHHHHHHHHHHHHHHHHcCCCCCCEEEECcccccchhHHHHHHHHHHcCCEEEeCCCC-
Confidence 4789999999999999999999999776655533 458899999999999988888777688999999999987643
Q ss_pred cccChHHHHHHHhccceeeEEecccchhhHHhhHHhhhh-----hcccccccc-----------------cccccccchh
Q psy14342 78 VEVNPALWLSAVSQYRVRDTFCSYGMLAGIKMSHAAVTS-----LCRSMKLAC-----------------ELYPSRHIAL 135 (316)
Q Consensus 78 ~~~~~~~~~~~~~~~~~t~~~~~~~~~~~l~~~~~~~~~-----~~~~~~ls~-----------------e~~~~yG~te 135 (316)
++..+++.++++++++++.+|+++..+......... ..+.+-.++ .+++.||+||
T Consensus 166 ---~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~lr~i~~gGe~l~~~~~~~~~~~~g~~v~~~YG~TE 242 (436)
T 3qov_A 166 ---NSKRQIKFISDFKTTALHAIPSYAIRLAEVFQEEGIDPRETTLKTLVIGAEPHTDEQRRKIERMLNVKAYNSFGMTE 242 (436)
T ss_dssp ---CHHHHHHHHHHHTCCEEECCHHHHHHHHHHHHHTTCCTTSSSCCEEEEESSCCCHHHHHHHHHHHTSEEEEEEEEGG
T ss_pred ---CHHHHHHHHHHHCCCEEEECHHHHHHHHHHHHHcCCCcccCCccEEEEeCCcCCHHHHHHHHHHhCccEEecCcchh
Confidence 688999999999999999999988776654432110 011112222 2888999999
Q ss_pred ccCC-CCCCCceEEEEeeeccCcccccCCCce-EEecCc------------eEEecC--CCcccCCCcCCCCceeeec-C
Q psy14342 136 CLDP-YCGLGFALWVLSSVYSGHHSILIPPSE-VEVNPA------------LWLSAV--SQYRVRDTFCSCNGALYQG-A 198 (316)
Q Consensus 136 ~~~~-~~~~~~~~~~~~~~~~g~~~~~~~g~~-~i~d~~------------l~v~~~--~gY~~~~~~~~~d~g~~~~-g 198 (316)
++.. .... +....| .+.+.+++. .++|++ |+++|. ..+ ..-.--++|.|++++ |
T Consensus 243 ~~~~~~~~~-------~~~~~g-~~~~~~~~~v~i~d~~~g~~~~~g~~Gel~v~~~~~~~~-~~~~y~TGDl~~~~~~g 313 (436)
T 3qov_A 243 MNGPGVAFE-------CQEQNG-MHFWEDCYLVEIIDPETGEPVPEGEIGELVLTTLDREMM-PLIRYRTRDLTRILPGK 313 (436)
T ss_dssp GTEEEEEEE-------CTTCSS-EEECTTTEEEEEECTTTCSBCSTTCCEEEEEEESSCCSS-CCCSEEEEEEECEECSC
T ss_pred hcCCeeEEe-------cCCCCe-eEEccCceEEEEEECCCCCCCCCCCceEEEEeccCcCCc-eEEEEEcCCEEEEcCCC
Confidence 9432 1111 101111 123566888 888842 888887 221 110112347776643 4
Q ss_pred ----------c--CCcccceeEECCcccChHhHHHHHHHhccccceeEEEeeC-----CcEEEEEEecCCchh----hcc
Q psy14342 199 ----------E--RLALDETIMLRGMRYHPIDIENSVMRAHKKIAECAVFTWT-----NLLVVVVELDGNESE----ALD 257 (316)
Q Consensus 199 ----------~--~GR~dd~i~~~G~~v~p~eIE~~l~~~~p~v~~~~v~~~~-----~~~~~~v~~~~~~~~----~~~ 257 (316)
. .||.||+||++|++|+|.|||++|.+ ||.|.+++|++.. +.+++++++.....+ .++
T Consensus 314 c~cG~~~~~il~i~GR~dd~ik~~G~~v~p~eiE~~l~~-~p~v~~~~vv~~~~~~~~~~l~a~v~~~~~~~~~~~~~~~ 392 (436)
T 3qov_A 314 CPCGRTHLRIDRIKGRSDDMFIIKGVNIFPMQVEKILVQ-FPELGSNYLITLETVNNQDEMIVEVELSDLSTDNYIELEK 392 (436)
T ss_dssp CTTCCCSCEECCCCCBSSSCEEETTEEECHHHHHHHHTT-CTTEEEEEEEEEEEETTEEEEEEEEEECTTCCCCHHHHHH
T ss_pred CCCCCCccccCcccCccCCEEEECCEEECHHHHHHHHHh-CcCcCCcEEEEEEcCCCCcEEEEEEEEcCccccchhhHHH
Confidence 2 89999999999999999999999999 9999999998873 367777777622222 367
Q ss_pred hHHHHHHHHHHhcCeeecEEEEEcCCCcccCCCchhhHHH
Q psy14342 258 LVPLVTNAVLEEHHLIVGVAVVVDPGVVPINSRGEKQRMH 297 (316)
Q Consensus 258 l~~~~~~~l~~~~~~~~~~~~~~~~~~lP~t~~gKi~r~~ 297 (316)
+.+++++.+.+....+ ..+.+++.++||+|+ ||++|..
T Consensus 393 l~~~l~~~l~~~~~~p-~~i~~v~~~~lP~t~-GKi~R~~ 430 (436)
T 3qov_A 393 IRRDIIRQLKDEILVT-PKVKLVKKGSLPQSE-GKAVRVK 430 (436)
T ss_dssp HHHHHHHHHHHHHSSC-CEEEEECTTCCC--------CEE
T ss_pred HHHHHHHHHHHhcCCc-eEEEEeCCCcccCcC-CcceEEE
Confidence 8899999999665666 478888888999999 9998853
|
| >2y4o_A Phenylacetate-coenzyme A ligase; phenylacetic acid degradation pathway; HET: DLL; 1.90A {Burkholderia cenocepacia} | Back alignment and structure |
|---|
Probab=100.00 E-value=4.5e-36 Score=277.47 Aligned_cols=283 Identities=12% Similarity=0.101 Sum_probs=201.3
Q ss_pred CeEEEEeccCCCCCceEEEEeHHHHHHHHHHHHH---HhcCCCCCceEEecCCc-CChhhhHHHHhhhhcCceeeeeCCc
Q psy14342 1 MLAYLDFSVSTTGMLAGIKMSHAAVTSLCRSMKL---ACELYPSRHIALCLDPY-CGLGFALWVLSSVYSGHHSILIPPS 76 (316)
Q Consensus 1 ~~a~i~~TSGTTG~PK~V~~t~~~l~~~~~~~~~---~~~~~~~d~~l~~~p~~-h~~g~~~~~~~~l~~G~~~v~~~~~ 76 (316)
|+++|+|||||||.||+|++||+++...+..... .+++.++|+++.++|+. |..++.. .+.++..|+++++.++.
T Consensus 93 ~~~~i~~TSGTTG~PK~v~~t~~~~~~~~~~~~~~~~~~~~~~~d~~l~~~~~~~~~~~~~~-~~~~~~~G~~~~~~~~~ 171 (443)
T 2y4o_A 93 QVVRVHASSGTTGKPTVVGYTARDIDTWANVTARSIRAAGGRPGDTLHNAFGYGLFTGGLGI-HYGAERLGCMVVPMSGG 171 (443)
T ss_dssp GCCEEEEECCSSSSCEEEEECHHHHHHHHHHHHHHHHHTTCCTTCEEEECSCCSSSHHHHHH-HHHHHHHTCEEECCCSC
T ss_pred heEEEEECCCCCCCceEEecCHHHHHHHHHHHHHHHHHcCCCCCCEEEEeccCcccccHHHH-HHHHHHcCCEEEECCCC
Confidence 4689999999999999999999998776544433 57888999999999984 5555544 78899999999887643
Q ss_pred ccccChHHHHHHHhccceeeEEecccchhhHHhhHHhhh-----hhcccccccc-----------------cccccccch
Q psy14342 77 EVEVNPALWLSAVSQYRVRDTFCSYGMLAGIKMSHAAVT-----SLCRSMKLAC-----------------ELYPSRHIA 134 (316)
Q Consensus 77 ~~~~~~~~~~~~~~~~~~t~~~~~~~~~~~l~~~~~~~~-----~~~~~~~ls~-----------------e~~~~yG~t 134 (316)
++..+++.++++++++++.+|+++..+........ ...+.+-.++ .+++.||+|
T Consensus 172 ----~~~~~~~~i~~~~~t~l~~~Ps~~~~l~~~~~~~~~~~~~~~lr~i~~gGe~l~~~~~~~~~~~~g~~v~~~YG~T 247 (443)
T 2y4o_A 172 ----QTEKQVQLIRDFEPKIILVTPSYMLNLIDEMVRQGMDPAESSLKIGIFGAEPWTQALRNEVETRVGIDALDIYGLS 247 (443)
T ss_dssp ----CHHHHHHHHHHHCCSEEEECHHHHHHHHHHHHHTTCCGGGSSCCEEEEESSCCCHHHHHHHHHHHTCEEEEEEEET
T ss_pred ----CHHHHHHHHHHhCCcEEEECHHHHHHHHHHHHHcCCCcccCCceEEEECCCcCCHHHHHHHHHHhCcCEEeccCch
Confidence 68899999999999999999998876655432210 0111122222 278899999
Q ss_pred hccCC-CCCCCceEEEEeeecc-CcccccCCCce-EEecCc------------eEEecC--CCcccCCCcCCCCceeeec
Q psy14342 135 LCLDP-YCGLGFALWVLSSVYS-GHHSILIPPSE-VEVNPA------------LWLSAV--SQYRVRDTFCSCNGALYQG 197 (316)
Q Consensus 135 e~~~~-~~~~~~~~~~~~~~~~-g~~~~~~~g~~-~i~d~~------------l~v~~~--~gY~~~~~~~~~d~g~~~~ 197 (316)
|+++. .+...+ ... | ...+.++.. .++|++ |+++|. ..+ ..-.--++|.|++++
T Consensus 248 E~~g~~~~~~~~-------~~~~g-~~~~~~~~~~~i~d~~~g~~~~~G~~Gel~v~~~t~~~~-p~~~y~TGDl~~~~~ 318 (443)
T 2y4o_A 248 EVMGPGVACECV-------ETKDG-PVIWEDHFYPEIIDPVTGEVLPDGSQGELVFTSLTKEAM-PVIRYRTRDLTALLP 318 (443)
T ss_dssp TTTEEEEEEECT-------TTCCS-EEECTTTEEEEEECTTTCCBCCTTCCEEEEEEESSCSSS-CCSSEEEEEEECEEC
T ss_pred hhcCCeEEeccC-------CCCCc-eEEccCCeEEEEEcCCCCCCCCCCCceEEEEeCCCcccC-hhheeecCCEEEEcC
Confidence 97421 111110 001 2 112456777 777742 788876 222 000112336666654
Q ss_pred --C--------cCCcccceeEECCcccChHhHHHHHHHhccccceeEEEee-----CCcEEEEEEecC------Cchhhc
Q psy14342 198 --A--------ERLALDETIMLRGMRYHPIDIENSVMRAHKKIAECAVFTW-----TNLLVVVVELDG------NESEAL 256 (316)
Q Consensus 198 --g--------~~GR~dd~i~~~G~~v~p~eIE~~l~~~~p~v~~~~v~~~-----~~~~~~~v~~~~------~~~~~~ 256 (316)
| ..||.||+||++|++|+|.|||++|.+ ||.|.+++++++ ++.+++++++.+ ...+.+
T Consensus 319 ~cG~~~~~l~~i~GR~~d~i~~~G~~v~p~eiE~~l~~-~p~V~~~~vv~~~~~~~~~~~~a~v~~~~~~~~~~~~~~~~ 397 (443)
T 2y4o_A 319 PTARAMRRLAKITGRSDDMLIVRGVNVFPSQIEEIVVA-LPLLSGQFQITLSRDGHMDRLDLAVELRSEAAASVTDGERA 397 (443)
T ss_dssp CSSSSSCEECCCCEESSCCEEETTEEECHHHHHHHHHT-STTEEEEEEEEEEEETTEEEEEEEEEECHHHHTTCCHHHHH
T ss_pred CCCCCccccCccccccCCeEEECCEEECHHHHHHHHHh-CcCcCccEEEEEecCCCCceEEEEEEECCcccccchhhHHH
Confidence 3 279999999999999999999999999 999999888875 235777777654 122346
Q ss_pred chHHHHHHHHHHhcCeeecEEEEEcCCCcccCCCchhhHHHHH
Q psy14342 257 DLVPLVTNAVLEEHHLIVGVAVVVDPGVVPINSRGEKQRMHLR 299 (316)
Q Consensus 257 ~l~~~~~~~l~~~~~~~~~~~~~~~~~~lP~t~~gKi~r~~l~ 299 (316)
++.+++++.+....+.+ ..+.++.+++||+|++||++|+..+
T Consensus 398 ~l~~~l~~~l~~~~~~p-~~v~~v~~~~lP~t~~GKi~r~~~~ 439 (443)
T 2y4o_A 398 ALARELQHRIKTMVGVS-SGVTVLAAGGIPATATGKARRVIDR 439 (443)
T ss_dssp HHHHHHHHHHHHHTCCC-CEEEEECTTCSCCCTTSCCCSEEEC
T ss_pred HHHHHHHHHHHHHhCCc-eEEEEeCCCcccCccCCcceEEEec
Confidence 78889999888665665 4688888789999999999987544
|
| >2y27_A Phenylacetate-coenzyme A ligase; phenylacetic acid degradation pathway; HET: MSE PG4 ATP; 1.60A {Burkholderia cenocepacia} PDB: 2y4n_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=7.1e-35 Score=268.94 Aligned_cols=281 Identities=12% Similarity=0.091 Sum_probs=200.1
Q ss_pred CeEEEEeccCCCCCceEEEEeHHHHHHHHHHHH---HHhcCCCCCceEEecCC-cCChhhhHHHHhhhhcCceeeeeCCc
Q psy14342 1 MLAYLDFSVSTTGMLAGIKMSHAAVTSLCRSMK---LACELYPSRHIALCLDP-YCGLGFALWVLSSVYSGHHSILIPPS 76 (316)
Q Consensus 1 ~~a~i~~TSGTTG~PK~V~~t~~~l~~~~~~~~---~~~~~~~~d~~l~~~p~-~h~~g~~~~~~~~l~~G~~~v~~~~~ 76 (316)
|+++|+|||||||.||+|++||+++...+..+. ..++++++|+++.++|+ +|..++.. ++.++..|+++++.++.
T Consensus 91 ~~~~i~~TSGTTG~PK~v~~t~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~-~~~~~~~G~~~~~~~~~ 169 (437)
T 2y27_A 91 RISRIHASSGTTGKPTVVGYTAADIDTWANLVARSIRAAGARRGDKVHVSYGYGLFTGGLGA-HYGAERAGLTVIPFGGG 169 (437)
T ss_dssp GCCEEEECCCTTSSCCEEEECHHHHHHHHHHHHHHHHHTTCCTTCEEEECSCCSSSHHHHHH-HHHHHHTTCEEECCCSC
T ss_pred HeEEEEECCCCCCCceEEecCHHHHHHHHHHHHHHHHHcCCCCCCEEEEcccccccccchHH-HHHHHHcCCEEEeCCCC
Confidence 468999999999999999999999877654433 35788899999999998 56666554 78999999999876543
Q ss_pred ccccChHHHHHHHhccceeeEEecccchhhHHhhHHhhh-----hhcccccccc-----------------cccccccch
Q psy14342 77 EVEVNPALWLSAVSQYRVRDTFCSYGMLAGIKMSHAAVT-----SLCRSMKLAC-----------------ELYPSRHIA 134 (316)
Q Consensus 77 ~~~~~~~~~~~~~~~~~~t~~~~~~~~~~~l~~~~~~~~-----~~~~~~~ls~-----------------e~~~~yG~t 134 (316)
++..+++.++++++++++.+|+++..+........ ...+.+-.++ .+++.||+|
T Consensus 170 ----~~~~~~~~i~~~~~t~l~~~Ps~~~~l~~~~~~~~~~~~~~~lr~i~~gGe~l~~~~~~~~~~~~g~~v~~~YG~T 245 (437)
T 2y27_A 170 ----QTEKQVQLIQDFRPDIIMVTPSYMLSIADEIERQGLDPVQSSLRIGIFGAEPWTNDMRVAIEQRMGIDAVDIYGLS 245 (437)
T ss_dssp ----CHHHHHHHHHHHCCSEEEECHHHHHHHHHHHHHTTCCGGGSSCCEEEEESSCCCHHHHHHHHHHHTSEEEEEEEET
T ss_pred ----CHHHHHHHHHHhCCCEEEECHHHHHHHHHHHHHcCCCcccCCeeEEEEcCccCCHHHHHHHHHHHCcCEEecCCch
Confidence 68899999999999999999999876655432210 0111112222 288899999
Q ss_pred hccCC-CCCCCceEEEEeeeccCcccccCCCce-EEecCc------------eEEecC--CCcccCCCcCCCCceeeec-
Q psy14342 135 LCLDP-YCGLGFALWVLSSVYSGHHSILIPPSE-VEVNPA------------LWLSAV--SQYRVRDTFCSCNGALYQG- 197 (316)
Q Consensus 135 e~~~~-~~~~~~~~~~~~~~~~g~~~~~~~g~~-~i~d~~------------l~v~~~--~gY~~~~~~~~~d~g~~~~- 197 (316)
|+++. .+..++. ...| .+.+.+++. .++|++ |+++|. ..+ ..-.--++|.|++++
T Consensus 246 E~~g~~~~~~~~~------~~~g-~~~~~~~~~~~i~d~~~g~~~~~g~~Gel~v~~~t~~~~-~~~~y~TGDl~~~~~~ 317 (437)
T 2y27_A 246 EVMGPGVASECVE------TKDG-PTIWEDHFYPEIIDPETGEVLPDGELGELVFTSLTKEAL-PIIRYRTRDLTRLLPG 317 (437)
T ss_dssp TTTEEEEEECCTT------TCSS-CEECTTTEEEEEECTTTCCBCCTTCCEEEEEEESSCSSS-CCCSEEEEEEECEECC
T ss_pred hhcCCeeEEecCC------CCCc-eeEccCceEEEEEcCCCCCCCCCCCccEEEEecCCcCCc-hhheeecCCEEEEeCC
Confidence 97421 2111110 0012 112456777 777742 788876 222 000112347777754
Q ss_pred -C--------cCCcccceeEECCcccChHhHHHHHHHhccccceeEEEee-----CCcEEEEEEecCCc----hhhcchH
Q psy14342 198 -A--------ERLALDETIMLRGMRYHPIDIENSVMRAHKKIAECAVFTW-----TNLLVVVVELDGNE----SEALDLV 259 (316)
Q Consensus 198 -g--------~~GR~dd~i~~~G~~v~p~eIE~~l~~~~p~v~~~~v~~~-----~~~~~~~v~~~~~~----~~~~~l~ 259 (316)
| ..||.||+||++|++|+|.|||++|.+ ||.|.+++|+++ ++.+++++++.+.. .+.+++.
T Consensus 318 ~G~~~~~i~~i~GR~~d~i~~~G~~v~p~eiE~~l~~-~p~V~~~~vv~~~~~~~~~~l~a~v~~~~~~~~~~~~~~~l~ 396 (437)
T 2y27_A 318 TARTMRRMEKITGRSDDMMIVRGVNVFPTQIEEQLLK-QRALAPHYQIVLTKEGPLDVLTLNVEPCPETAPDTAAIQVAK 396 (437)
T ss_dssp SSSSSCEECCCCEEGGGCEEETTEEECHHHHHHHHTT-CTTBCSCCEEEEEEETTEEEEEEEECBCTTTTTCHHHHHHHH
T ss_pred CCCCccccCccccccCCeEEECCeEECHHHHHHHHHh-CcCcCccEEEEEeecCCCceEEEEEEECCCccchhhhHHHHH
Confidence 3 289999999999999999999999999 999998888875 24677777776543 2336788
Q ss_pred HHHHHHHHHhcCeeecEEEEEcCCCcccCCCchhhHHH
Q psy14342 260 PLVTNAVLEEHHLIVGVAVVVDPGVVPINSRGEKQRMH 297 (316)
Q Consensus 260 ~~~~~~l~~~~~~~~~~~~~~~~~~lP~t~~gKi~r~~ 297 (316)
+++++.+....+.+ ..+.++.+++||+|+ ||++|+.
T Consensus 397 ~~l~~~l~~~~~~p-~~v~~v~~~~lP~t~-GKi~r~~ 432 (437)
T 2y27_A 397 QALAYDIKSLIGVT-AVINVLPVNGIERSV-GKARRVV 432 (437)
T ss_dssp HHHHHHHHHHHCCC-EEEEECCTTCSCCCS-SSCCCEE
T ss_pred HHHHHHHHHhcCCc-eEEEEeCCCCccCCC-CcceEEE
Confidence 88998888655665 357888778999999 9999864
|
| >3t5a_A Long-chain-fatty-acid--AMP ligase FADD28; acetyl-COA synthetase like fold, AMP-binding; 2.05A {Mycobacterium tuberculosis} PDB: 3e53_A | Back alignment and structure |
|---|
Probab=99.93 E-value=1.3e-26 Score=215.93 Aligned_cols=203 Identities=13% Similarity=0.117 Sum_probs=140.7
Q ss_pred CeEEEEeccCCCCCceEEEEeHHHHHHHHHHHHHHhcCCC------CCceEEecCCcCChhhhHHHHhhhhcCceeeeeC
Q psy14342 1 MLAYLDFSVSTTGMLAGIKMSHAAVTSLCRSMKLACELYP------SRHIALCLDPYCGLGFALWVLSSVYSGHHSILIP 74 (316)
Q Consensus 1 ~~a~i~~TSGTTG~PK~V~~t~~~l~~~~~~~~~~~~~~~------~d~~l~~~p~~h~~g~~~~~~~~l~~G~~~v~~~ 74 (316)
|+++|+|||||||.||||++||+++..++......+++.+ +|+++.++|++|++|++..++.++..|+++++.+
T Consensus 184 d~a~i~~TSGTTG~PKgV~~th~~l~~~~~~~~~~~~~~~~~~~~~~d~~l~~~pl~h~~g~~~~~~~~l~~G~~~v~~~ 263 (480)
T 3t5a_A 184 STAYLQYTSGSTRTPAGVVMSHQNVRVNFEQLMSGYFADTDGIPPPNSALVSWLPFYHDMGLVIGICAPILGGYPAVLTS 263 (480)
T ss_dssp SEEEEECC------CCCEEEEHHHHHHHHHHHHHHHCTTTTTCCCTTEEEEECCCTTSTTHHHHHTHHHHHHTCCEEECC
T ss_pred ceEEEEecCCCCCCCcEEEEeHHHHHHHHHHHHHHhccccccCCCCCCeEEEeCCCcCccHHHHHHHHHHHcCCceEEEC
Confidence 5899999999999999999999999999888888888877 8999999999999998877899999999999987
Q ss_pred CcccccChHHHHHHHhccceeeEEecccchhhHHhhH---Hhhh----hhcccccccc----------------------
Q psy14342 75 PSEVEVNPALWLSAVSQYRVRDTFCSYGMLAGIKMSH---AAVT----SLCRSMKLAC---------------------- 125 (316)
Q Consensus 75 ~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~~~l~~~~---~~~~----~~~~~~~ls~---------------------- 125 (316)
+..+..+|..|++.+++++++ +..+|+++..+.... .... ...+.+-.++
T Consensus 264 ~~~~~~~~~~~~~~i~~~~~t-~~~~p~~~~~l~~~~~~~~~~~~~~l~~lr~i~~gG~~l~~~~~~~~~~~~~~~~~~~ 342 (480)
T 3t5a_A 264 PVSFLQRPARWMHLMASDFHA-FSAAPNFAFELAARRTTDDDMAGRDLGNILTILSGSERVQAATIKRFADRFARFNLQE 342 (480)
T ss_dssp HHHHHHCTHHHHHHTTSSSEE-EEEECHHHHHHHHHHCCTGGGTTCCCTTCCEEEECCTTCCHHHHHHHHHHSGGGTCCG
T ss_pred HHHHHHCHHHHHHHHHhhcee-EeeChHHHHHHHHhhcCcccccccchhhhheeeecCCcCCHHHHHHHHHHHhhcCCCh
Confidence 665556899999999999999 778888776554321 1100 0011111111
Q ss_pred -cccccccchhccCCCCCCCc----eE-EEE-e--------------eeccCcccccCCCce-EEecCc-----------
Q psy14342 126 -ELYPSRHIALCLDPYCGLGF----AL-WVL-S--------------SVYSGHHSILIPPSE-VEVNPA----------- 172 (316)
Q Consensus 126 -e~~~~yG~te~~~~~~~~~~----~~-~~~-~--------------~~~~g~~~~~~~g~~-~i~d~~----------- 172 (316)
.+++.||+||++.......+ .. ... . ....++.|.|++ .+ +++|++
T Consensus 343 ~~~~~~YG~TE~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~G~p~~-~~~~ivd~~~g~~~~~g~~G 421 (480)
T 3t5a_A 343 RVIRPSYWLAEATVYVATSKPGQPPETVDFDTESLSAGHAKPCAGGGATSLISYMLPRS-PIVRIVDSDTCIECPDGTVG 421 (480)
T ss_dssp GGEEEEEEETTTTEEEEECCTTSSCCEEEECHHHHHTTBCCCCCSSSCEEEECEECCSS-SEEEEEETTTTEECCTTBCE
T ss_pred hhccccccccccceeEeecccCCCcceEEecHHHhccCceeecCCCCcceeeecCcccC-CEEEEEcCCCCcCCCCCCEE
Confidence 15678999999753322111 00 000 0 011124455788 88 888753
Q ss_pred -eEEecC---CCcccCCCcCCC--------------CceeeecCcCCcccc
Q psy14342 173 -LWLSAV---SQYRVRDTFCSC--------------NGALYQGAERLALDE 205 (316)
Q Consensus 173 -l~v~~~---~gY~~~~~~~~~--------------d~g~~~~g~~GR~dd 205 (316)
|+++|+ .|||++++.+.. +.||+++|++||.||
T Consensus 422 El~v~g~~v~~GY~~~pe~t~~~f~~~~~~~~~~~~~~~w~~TGDlg~~dd 472 (480)
T 3t5a_A 422 EIWVHGDNVANGYWQKPDESERTFGGKIVTPSPGTPEGPWLRTGDSGFVTD 472 (480)
T ss_dssp EEEEESTTSCCCBTTBHHHHHHHHCBCCSSCCTTCCCCCBEEEEEEEEEET
T ss_pred EEEEeCCccccccccCcchhHHHHhhhhccccCCCCCCCeeeccceeeEEC
Confidence 999999 999999876532 345788887777653
|
| >3hgu_A EHPF; phenazine, antibiotic, biosynthetic protein; 1.95A {Pantoea agglomerans} PDB: 3hgv_A 3l2k_A* | Back alignment and structure |
|---|
Probab=99.81 E-value=5.1e-20 Score=165.83 Aligned_cols=196 Identities=13% Similarity=-0.015 Sum_probs=121.1
Q ss_pred CeEEEEeccCCCCCceEEEEeHHHHHHHHHHHH---HHhcCCCCCceEEecCC-cCChhhhHHHHhhhhcCceeeeeCCc
Q psy14342 1 MLAYLDFSVSTTGMLAGIKMSHAAVTSLCRSMK---LACELYPSRHIALCLDP-YCGLGFALWVLSSVYSGHHSILIPPS 76 (316)
Q Consensus 1 ~~a~i~~TSGTTG~PK~V~~t~~~l~~~~~~~~---~~~~~~~~d~~l~~~p~-~h~~g~~~~~~~~l~~G~~~v~~~~~ 76 (316)
|+++|+|||||||.||+|.++|+++...+.... ..+++.++|+++.++|+ +|..|+.. .+.++..|+ +++....
T Consensus 92 ~~a~i~~TSGTTG~PKgv~~t~~~~~~~~~~~~~~~~~~~~~~~d~~l~~~p~g~~~~g~~~-~~~~~~~G~-~v~~~~~ 169 (369)
T 3hgu_A 92 SHPQVYESGGTTGAPKYVVAYDAWIEALISWRMSGYQHRPGRPSGNTLAAIPTGPHIVGAIN-KERALRLGG-MFFSIDI 169 (369)
T ss_dssp CCCEEEEECC---CCEEEEECHHHHHHHHHHHTTTTTTSTTCCCCEEEECSCCTTCHHHHHH-HHHHHHTTS-CEECCCC
T ss_pred ccEEEEECCCCCCCCCEEEECHHHHHHHHHHHHhhHHhhCCCCcceEEEecCCCchhhhHHH-HHHHHHcCC-EEECccC
Confidence 468999999999999999999999988877443 44567889999999999 99988887 666788999 4443321
Q ss_pred ccccChH-----------------------HHHHHHhccceeeEEecccchhhHHhhHHhhh---hhcccccccc-----
Q psy14342 77 EVEVNPA-----------------------LWLSAVSQYRVRDTFCSYGMLAGIKMSHAAVT---SLCRSMKLAC----- 125 (316)
Q Consensus 77 ~~~~~~~-----------------------~~~~~~~~~~~t~~~~~~~~~~~l~~~~~~~~---~~~~~~~ls~----- 125 (316)
+|. .+++.+++++++++..+|+++..+........ ...+.+..++
T Consensus 170 ----dp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~t~l~~~Ps~~~~l~~~~~~~~~~~~~lr~i~~gGe~l~~ 245 (369)
T 3hgu_A 170 ----DPRWVKRSLSEGDTATVRKYTHHLVDQVQNTLMNQDIRFLVTTPPVLRELLKRPEVVLQMKQSLAQITLGGTELNL 245 (369)
T ss_dssp ----CHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHSCEEEEEECHHHHHHHTTCHHHHHHHHHHCSEEEEESSCCCH
T ss_pred ----ChHHHHHhhcccchhhhHHHHHHHHHHHHHHHHhCCCCEEEeCHHHHHHHHhhhhhhccccCCeeEEEECCccCCH
Confidence 344 67779999999999999998876654322110 0011111111
Q ss_pred --------------cccccccchhccCCCCCCCceEEEEeeeccCccccc------CCCce-EEecC-c-----------
Q psy14342 126 --------------ELYPSRHIALCLDPYCGLGFALWVLSSVYSGHHSIL------IPPSE-VEVNP-A----------- 172 (316)
Q Consensus 126 --------------e~~~~yG~te~~~~~~~~~~~~~~~~~~~~g~~~~~------~~g~~-~i~d~-~----------- 172 (316)
.+++.||+||++.... .+... +.|.+ +|+++ +++|+ +
T Consensus 246 ~~~~~~~~~~~p~~~v~~~YG~TE~~~~~~--------~~~~~--~~G~~~~~~~~~~~~~v~ivD~~~g~~vp~G~~GE 315 (369)
T 3hgu_A 246 DEIKFIASEILPDCEFSASYGSTSALGVSR--------SLLIT--SESQQVIYDSFSPFITYDVVDSITAQTVEYGERGN 315 (369)
T ss_dssp HHHHHHHHHTCTTSEEEEEEEEGGGTEEEE--------ECCBC--TTCSSCEEECCTTTEEEEEECTTTCSBCCTTCEEE
T ss_pred HHHHHHHHHhCCCcEEEcccCchhhhccee--------ccccc--cCCCcccccCCCCCeEEEEECCCCCcCCCCCCceE
Confidence 3677899999863221 01111 23335 88988 88887 2
Q ss_pred eEEecC------CCcccCCCcCCC--CceeeecCc-----CCcccceeEECCc
Q psy14342 173 LWLSAV------SQYRVRDTFCSC--NGALYQGAE-----RLALDETIMLRGM 212 (316)
Q Consensus 173 l~v~~~------~gY~~~~~~~~~--d~g~~~~g~-----~GR~dd~i~~~G~ 212 (316)
|++++. .+|+.++.++.. ..||..+|. ++|.|+..++.|.
T Consensus 316 l~vt~l~~~~~l~ry~tgD~~~~~~~~~g~~~d~~~~v~~~~~~~~~~~i~gv 368 (369)
T 3hgu_A 316 VIVTHLSPWAFYPRVAERDTAIRLPGVSGFAGDRLADIEPLKISEGRKVIEGV 368 (369)
T ss_dssp EEEEEEETTEEEEEEEEEEEEEEECCSTTCSSCEEEEEEECC-----------
T ss_pred EEEEEcCcccccccccCCceEEEecCCCCCcCcccccceeccccCCCceeeec
Confidence 777765 467665443322 344554443 7888888888773
|
| >3lax_A Phenylacetate-coenzyme A ligase; structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; 1.43A {Bacteroides vulgatus} | Back alignment and structure |
|---|
Probab=99.71 E-value=2.4e-17 Score=121.98 Aligned_cols=92 Identities=24% Similarity=0.347 Sum_probs=72.9
Q ss_pred CcccceeEECCcccChHhHHHHHHHhccccceeEEEeeC-----CcEEEEEEecCCch----hhcchHHHHHHHHHHhcC
Q psy14342 201 LALDETIMLRGMRYHPIDIENSVMRAHKKIAECAVFTWT-----NLLVVVVELDGNES----EALDLVPLVTNAVLEEHH 271 (316)
Q Consensus 201 GR~dd~i~~~G~~v~p~eIE~~l~~~~p~v~~~~v~~~~-----~~~~~~v~~~~~~~----~~~~l~~~~~~~l~~~~~ 271 (316)
.|.||||+++|.||+|.|||++|.+ ||+|.+++++++. +.+.++++..+... ..+++.+++++.+...++
T Consensus 1 srADDmIiv~G~nv~P~eIE~vl~~-~p~v~~~~vv~v~~~~~~~~~~~~V~~~~~~~~~~~~~~~l~~~i~~~l~~~~g 79 (109)
T 3lax_A 1 SNADDMIILKGVNIFPIQIETILLQ-FKELGSDYLITLETAESNDEMTVEVELSQLFTDDYGRLQALTREITRQLKDEIL 79 (109)
T ss_dssp CGGGSCEEETTEEECHHHHHHHHHT-CTTEEEEEEEEEEEETTEEEEEEEEEECTTCCCCHHHHHHHHHHHHHHHHHHHS
T ss_pred CCcCEEEEECCEEECHHHHHHHHHh-CCCcccceEEEEeccccceeEEEEEEEeeccccccchhhhhHHHHHHHHHHHhC
Confidence 4999999999999999999999999 9999999888873 35667776665432 225677888888887877
Q ss_pred eeecEEEEEcCCCcccCCCchhhH
Q psy14342 272 LIVGVAVVVDPGVVPINSRGEKQR 295 (316)
Q Consensus 272 ~~~~~~~~~~~~~lP~t~~gKi~r 295 (316)
+++ .+.++++++||+| +||++|
T Consensus 80 v~~-~v~~v~~~~lPrt-sGKi~R 101 (109)
T 3lax_A 80 VTP-RVKLVPKGALPKS-EGKAVR 101 (109)
T ss_dssp SCC-EEEEECTTCSCCC----CCC
T ss_pred Ccc-ceEEEcCCeecCC-CCCcch
Confidence 765 6889998899998 699987
|
| >4epl_A Jasmonic acid-amido synthetase JAR1; ANL adenylating enzyme, acyl acid-amido synthetase, adenylat ligase; HET: JAI; 2.01A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=88.05 E-value=1 Score=42.20 Aligned_cols=27 Identities=15% Similarity=-0.007 Sum_probs=25.8
Q ss_pred CCcccceeEECCcccChHhHHHHHHHh
Q psy14342 200 RLALDETIMLRGMRYHPIDIENSVMRA 226 (316)
Q Consensus 200 ~GR~dd~i~~~G~~v~p~eIE~~l~~~ 226 (316)
+||.|+++++.|+|+++.+||++|.++
T Consensus 428 ~gR~~~~l~~~Ge~~~~~~v~~al~~a 454 (581)
T 4epl_A 428 ICRRNLILSINIDKNTERDLQLSVESA 454 (581)
T ss_dssp EEETTCCBCSSSCCBCHHHHHHHHHHH
T ss_pred EeecCCeEEeeeeECCHHHHHHHHHHH
Confidence 999999999999999999999999873
|
| >3rix_A Luciferase, luciferin 4-monooxygenase; oxidoreductase, photoprotein, luminescence, aspulvinone, natural product extracts; HET: 923; 1.70A {Photinus pyralis} SCOP: e.23.1.1 PDB: 1ba3_A 1lci_A* 4e5d_A* 3ies_A* 3iep_A* 3ier_A* 4g36_A* 4g37_A* 3qya_A | Back alignment and structure |
|---|
Probab=84.70 E-value=7.4 Score=35.89 Aligned_cols=84 Identities=18% Similarity=0.178 Sum_probs=64.1
Q ss_pred EEEeHHHHHHHHHHHHHH---hcCCCCCceEEecCCcCChhhhHHHHhhhhcCceeeeeCCcccccChHHHHHHHhccce
Q psy14342 18 IKMSHAAVTSLCRSMKLA---CELYPSRHIALCLDPYCGLGFALWVLSSVYSGHHSILIPPSEVEVNPALWLSAVSQYRV 94 (316)
Q Consensus 18 V~~t~~~l~~~~~~~~~~---~~~~~~d~~l~~~p~~h~~g~~~~~~~~l~~G~~~v~~~~~~~~~~~~~~~~~~~~~~~ 94 (316)
..+|.+.+...+..+... .++.++|++..+++-+ ..++..++..+..|+..+..++.. .+.++...++..++
T Consensus 49 ~~~Ty~el~~~~~~lA~~L~~~Gv~~gd~V~i~~~n~--~e~~~~~lA~~~~Gav~vpl~~~~---~~~~l~~~l~~~~~ 123 (550)
T 3rix_A 49 VNITYAEYFEMSVRLAEAMKRYGLNTNHRIVVCSENS--LQFFMPVLGALFIGVAVAPANDIY---NERELLNSMNISQP 123 (550)
T ss_dssp CEEEHHHHHHHHHHHHHHHHHHTCCTTCEEEEECSSC--TTTHHHHHHHHHHTCEEEECCTTC---CHHHHHHHHHHHCC
T ss_pred cEeEHHHHHHHHHHHHHHHHHhCCCCCCEEEEEcCCc--ccHHHHHHHHHHcCCEEeecCCcC---CHHHHHHHHHhcCC
Confidence 368999887776655554 4788999999998754 356666889999999999887653 56778889999999
Q ss_pred eeEEecccchhh
Q psy14342 95 RDTFCSYGMLAG 106 (316)
Q Consensus 95 t~~~~~~~~~~~ 106 (316)
.++++.......
T Consensus 124 ~~vi~~~~~~~~ 135 (550)
T 3rix_A 124 TVVFVSKKGLQK 135 (550)
T ss_dssp SEEEECGGGHHH
T ss_pred eEEEEcHHHHHH
Confidence 988877665443
|
| >4b2g_A GH3-1 auxin conjugating enzyme; signaling protein, ignaling protein, adenylate, amino acid conjugation, plant growth; HET: V1N; 2.40A {Vitis vinifera} | Back alignment and structure |
|---|
Probab=83.18 E-value=0.38 Score=45.26 Aligned_cols=27 Identities=7% Similarity=0.070 Sum_probs=25.8
Q ss_pred CCcccceeEECCcccChHhHHHHHHHh
Q psy14342 200 RLALDETIMLRGMRYHPIDIENSVMRA 226 (316)
Q Consensus 200 ~GR~dd~i~~~G~~v~p~eIE~~l~~~ 226 (316)
+||.+|+|++.|+||++.+||++|.++
T Consensus 433 ~gR~~~~l~~~Geki~~~~v~~av~~a 459 (609)
T 4b2g_A 433 VRRKNVLLSIDSDKTDEAELQKAVDNA 459 (609)
T ss_dssp EEETTCCBCSSSCCBCHHHHHHHHHHH
T ss_pred EEecCCeEEccccCCCHHHHHHHHHHH
Confidence 999999999999999999999999973
|
| >3g7s_A Long-chain-fatty-acid--COA ligase (FADD-1); protein structure initiative, PSI-II, NYSGXRC, 11193J, structural genomics; 2.15A {Archaeoglobus fulgidus dsm 4304} | Back alignment and structure |
|---|
Probab=81.28 E-value=9.8 Score=35.05 Aligned_cols=83 Identities=6% Similarity=0.117 Sum_probs=63.3
Q ss_pred EEEeHHHHHHHHHHHHHH---hcCCCCCceEEecCCcCChhhhHHHHhhhhcCceeeeeCCcccccChHHHHHHHhccce
Q psy14342 18 IKMSHAAVTSLCRSMKLA---CELYPSRHIALCLDPYCGLGFALWVLSSVYSGHHSILIPPSEVEVNPALWLSAVSQYRV 94 (316)
Q Consensus 18 V~~t~~~l~~~~~~~~~~---~~~~~~d~~l~~~p~~h~~g~~~~~~~~l~~G~~~v~~~~~~~~~~~~~~~~~~~~~~~ 94 (316)
-.+|.+.|...+..+... .++.++|++..+++-+ ..++..++..+..|+..+..++.. .+.+...++++.++
T Consensus 51 ~~~Ty~el~~~~~~lA~~L~~~Gv~~gd~V~i~~~~~--~~~~~~~lA~~~~G~~~vpl~~~~---~~~~l~~il~~~~~ 125 (549)
T 3g7s_A 51 ESMNFLEICEVTKKLASGISRKGVRKGEHVGVCIPNS--IDYVMTIYALWRVAATPVPINPMY---KSFELEHILNDSEA 125 (549)
T ss_dssp SEEEHHHHHHHHHHHHHHHHHTTCCTTCEEEEECCSS--HHHHHHHHHHHHTTCEEEECCTTC---CHHHHHHHHHHTTC
T ss_pred ceeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCC--HHHHHHHHHHHHhCCEEEccCCCC---CHHHHHHHHHhcCC
Confidence 368999888776665554 4788999999998753 466666889999999999887653 56778889999999
Q ss_pred eeEEecccchh
Q psy14342 95 RDTFCSYGMLA 105 (316)
Q Consensus 95 t~~~~~~~~~~ 105 (316)
.++++......
T Consensus 126 ~~~i~~~~~~~ 136 (549)
T 3g7s_A 126 TTLVVHSMLYE 136 (549)
T ss_dssp SEEEEEGGGHH
T ss_pred CEEEEChHHHH
Confidence 98877665443
|
| >4eql_A 4-substituted benzoates-glutamate ligase GH3.12; firefly luciferase family, acyl adenylase, amino acid conjug ligase; HET: AMP SAL; 1.80A {Arabidopsis thaliana} PDB: 4epm_A* 4eq4_A* 4ewv_A* | Back alignment and structure |
|---|
Probab=80.86 E-value=0.41 Score=44.81 Aligned_cols=27 Identities=11% Similarity=0.054 Sum_probs=25.8
Q ss_pred CCcccceeEECCcccChHhHHHHHHHh
Q psy14342 200 RLALDETIMLRGMRYHPIDIENSVMRA 226 (316)
Q Consensus 200 ~GR~dd~i~~~G~~v~p~eIE~~l~~~ 226 (316)
+||.||+|++.|+|+++++||++|.++
T Consensus 421 ~gR~~~~l~~~Gekl~~~~v~~al~~a 447 (581)
T 4eql_A 421 VRRENVVLSIDSDKTNEEDLFKAVSQA 447 (581)
T ss_dssp EEETTEEECSSSCCEEHHHHHHHHHHC
T ss_pred EEecCCEEEeeeeECCHHHHHHHHHHH
Confidence 999999999999999999999999973
|
| >3ni2_A 4-coumarate:COA ligase; 4CL, phenylpropanoid biosynthesis; HET: AYL EPE; 1.90A {Populus tomentosa} PDB: 3a9v_A* 3a9u_A* | Back alignment and structure |
|---|
Probab=80.39 E-value=12 Score=34.31 Aligned_cols=82 Identities=17% Similarity=0.097 Sum_probs=62.8
Q ss_pred EEeHHHHHHHHHHHHHH---hcCCCCCceEEecCCcCChhhhHHHHhhhhcCceeeeeCCcccccChHHHHHHHhcccee
Q psy14342 19 KMSHAAVTSLCRSMKLA---CELYPSRHIALCLDPYCGLGFALWVLSSVYSGHHSILIPPSEVEVNPALWLSAVSQYRVR 95 (316)
Q Consensus 19 ~~t~~~l~~~~~~~~~~---~~~~~~d~~l~~~p~~h~~g~~~~~~~~l~~G~~~v~~~~~~~~~~~~~~~~~~~~~~~t 95 (316)
.+|.+.+...+..+... .++.++|++..+++- ...++..++..+..|+..+..++.. .+.+....+++.++.
T Consensus 49 ~~Ty~el~~~~~~lA~~L~~~Gv~~gd~V~i~~~~--~~~~~~~~la~~~~Gav~vpl~~~~---~~~~l~~~l~~~~~~ 123 (536)
T 3ni2_A 49 VYTYADVELTARRVASGLNKIGIQQGDVIMLFLPS--SPEFVLAFLGASHRGAIITAANPFS---TPAELAKHAKASRAK 123 (536)
T ss_dssp EEEHHHHHHHHHHHHHHHHHTTCCTTCEEEEECCS--SHHHHHHHHHHHHHTCEEEECCTTC---CHHHHHHHHHHHTEE
T ss_pred EEEHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCC--cHHHHHHHHHHHHhCCEEeccCCCC---CHHHHHHHHHhcCCE
Confidence 68999887776655554 478899999998775 3466666889999999999887653 567788899999999
Q ss_pred eEEecccchh
Q psy14342 96 DTFCSYGMLA 105 (316)
Q Consensus 96 ~~~~~~~~~~ 105 (316)
++++......
T Consensus 124 ~~i~~~~~~~ 133 (536)
T 3ni2_A 124 LLITQACYYE 133 (536)
T ss_dssp EEEECGGGTH
T ss_pred EEEEChHHHH
Confidence 8877665443
|
Homologous Structure Domains
Structure Domains Detected by RPS-BLAST
Original result of RPS-BLAST against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
E-value |
| 316 | ||||
| d1pg4a_ | 643 | e.23.1.1 (A:) Acetyl-CoA synthetase {Salmonella en | 9e-07 | |
| d1pg4a_ | 643 | e.23.1.1 (A:) Acetyl-CoA synthetase {Salmonella en | 3e-06 | |
| d1mdba_ | 536 | e.23.1.1 (A:) Dihydroxybenzoate-AMP ligase DhbE {B | 5e-06 | |
| d1ry2a_ | 640 | e.23.1.1 (A:) Acetyl-CoA synthetase {Baker's yeast | 1e-05 | |
| d1ry2a_ | 640 | e.23.1.1 (A:) Acetyl-CoA synthetase {Baker's yeast | 7e-04 | |
| d1lcia_ | 541 | e.23.1.1 (A:) Luciferase {Firefly (Photinus pyrali | 1e-05 | |
| d1v25a_ | 534 | e.23.1.1 (A:) Long chain fatty acid-CoA ligase TT0 | 2e-05 | |
| d1amua_ | 514 | e.23.1.1 (A:) Phenylalanine activating domain of g | 4e-05 | |
| d3cw9a1 | 503 | e.23.1.1 (A:1-503) 4-chlorobenzoyl CoA ligase {Alc | 5e-05 |
| >d1pg4a_ e.23.1.1 (A:) Acetyl-CoA synthetase {Salmonella enterica [TaxId: 28901]} Length = 643 | Back information, alignment and structure |
|---|
class: Multi-domain proteins (alpha and beta) fold: Acetyl-CoA synthetase-like superfamily: Acetyl-CoA synthetase-like family: Acetyl-CoA synthetase-like domain: Acetyl-CoA synthetase species: Salmonella enterica [TaxId: 28901]
Score = 47.7 bits (113), Expect = 9e-07
Identities = 12/107 (11%), Positives = 36/107 (33%), Gaps = 1/107 (0%)
Query: 2 LAYLDFSVSTTGMLAGIKMSHAA-VTSLCRSMKLACELYPSRHIALCLDPYCGLGFALWV 60
++ ++ +TG G+ + + + K + +P D G + +
Sbjct: 254 PLFILYTSGSTGKPKGVLHTTGGYLVYAATTFKYVFDYHPGDIYWCTADVGWVTGHSYLL 313
Query: 61 LSSVYSGHHSILIPPSEVEVNPALWLSAVSQYRVRDTFCSYGMLAGI 107
+ G +++ PA V +++V + + + +
Sbjct: 314 YGPLACGATTLMFEGVPNWPTPARMCQVVDKHQVNILYTAPTAIRAL 360
|
| >d1pg4a_ e.23.1.1 (A:) Acetyl-CoA synthetase {Salmonella enterica [TaxId: 28901]} Length = 643 | Back information, alignment and structure |
|---|
class: Multi-domain proteins (alpha and beta) fold: Acetyl-CoA synthetase-like superfamily: Acetyl-CoA synthetase-like family: Acetyl-CoA synthetase-like domain: Acetyl-CoA synthetase species: Salmonella enterica [TaxId: 28901]
Score = 46.2 bits (109), Expect = 3e-06
Identities = 31/121 (25%), Positives = 48/121 (39%), Gaps = 13/121 (10%)
Query: 203 LDETIMLRGMRYHPIDIENSVMRAHKKIAECAVF-----TWTNLLVVVVELDGNESEALD 257
+D+ + + G R +IE+ + AH KIAE AV + V L+ E + +
Sbjct: 512 VDDVLNVSGHRLGTAEIES-ALVAHPKIAEAAVVGIPHAIKGQAIYAYVTLNHGEEPSPE 570
Query: 258 LVPLVTNAVLEE--HHLIVGVAVVVDPGVVPINSRGEKQRMHLRD---GFLADQLDPIYV 312
L V N V +E V D +P G+ R LR G ++ D +
Sbjct: 571 LYAEVRNWVRKEIGPLATPDVLHWTDS--LPKTRSGKIMRRILRKIAAGDTSNLGDTSTL 628
Query: 313 A 313
A
Sbjct: 629 A 629
|
| >d1mdba_ e.23.1.1 (A:) Dihydroxybenzoate-AMP ligase DhbE {Bacillus subtilis [TaxId: 1423]} Length = 536 | Back information, alignment and structure |
|---|
class: Multi-domain proteins (alpha and beta) fold: Acetyl-CoA synthetase-like superfamily: Acetyl-CoA synthetase-like family: Acetyl-CoA synthetase-like domain: Dihydroxybenzoate-AMP ligase DhbE species: Bacillus subtilis [TaxId: 1423]
Score = 45.4 bits (106), Expect = 5e-06
Identities = 17/102 (16%), Positives = 34/102 (33%), Gaps = 9/102 (8%)
Query: 204 DETIMLRGMRYHPIDIENSVMRAHKKIAECAVF-----TWTNLLVVVVELDGNESEALDL 258
+ I G + ++EN + AH + + A+ V + +A +L
Sbjct: 430 KDQINRGGEKVAAEEVEN-HLLAHPAVHDAAMVSMPDQFLGERSCVFIIPRDEAPKAAEL 488
Query: 259 VPLVTNAVLEEHHLIVGVAVVVDPGVVPINSRGEKQRMHLRD 300
+ L + + V V P G+ + LR+
Sbjct: 489 KAFLRERGLAAYKIPDRVEFVES---FPQTGVGKVSKKALRE 527
|
| >d1ry2a_ e.23.1.1 (A:) Acetyl-CoA synthetase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 640 | Back information, alignment and structure |
|---|
class: Multi-domain proteins (alpha and beta) fold: Acetyl-CoA synthetase-like superfamily: Acetyl-CoA synthetase-like family: Acetyl-CoA synthetase-like domain: Acetyl-CoA synthetase species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 44.5 bits (104), Expect = 1e-05
Identities = 14/107 (13%), Positives = 39/107 (36%), Gaps = 1/107 (0%)
Query: 3 AYLDFSVSTTGMLAGIKMSH-AAVTSLCRSMKLACELYPSRHIALCLDPYCGLGFALWVL 61
+L ++ +TG G++ S + +M+ + + D G V
Sbjct: 242 LFLLYTSGSTGAPKGVQHSTAGYLLGALLTMRYTFDTHQEDVFFTAGDIGWITGHTYVVY 301
Query: 62 SSVYSGHHSILIPPSEVEVNPALWLSAVSQYRVRDTFCSYGMLAGIK 108
+ G +++ + N + + + +++V + + L +K
Sbjct: 302 GPLLYGCATLVFEGTPAYPNYSRYWDIIDEHKVTQFYVAPTALRLLK 348
|
| >d1ry2a_ e.23.1.1 (A:) Acetyl-CoA synthetase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 640 | Back information, alignment and structure |
|---|
class: Multi-domain proteins (alpha and beta) fold: Acetyl-CoA synthetase-like superfamily: Acetyl-CoA synthetase-like family: Acetyl-CoA synthetase-like domain: Acetyl-CoA synthetase species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 38.7 bits (89), Expect = 7e-04
Identities = 22/112 (19%), Positives = 40/112 (35%), Gaps = 17/112 (15%)
Query: 203 LDETIMLRGMRYHPIDIENSVMRAHKKIAECAVF-----TWTNLLVVVVELDGN------ 251
+D+ + + G R +IE + +AECAV + V L
Sbjct: 502 VDDVVNVSGHRLSTAEIEA-AIIEDPIVAECAVVGFNDDLTGQAVAAFVVLKNKSSWSTA 560
Query: 252 -ESEALDLVPLVTNAVLEE--HHLIVGVAVVVDPGVVPINSRGEKQRMHLRD 300
+ E D+ + V ++ + ++VD +P G+ R LR
Sbjct: 561 TDDELQDIKKHLVFTVRKDIGPFAAPKLIILVDD--LPKTRSGKIMRRILRK 610
|
| >d1lcia_ e.23.1.1 (A:) Luciferase {Firefly (Photinus pyralis) [TaxId: 7054]} Length = 541 | Back information, alignment and structure |
|---|
class: Multi-domain proteins (alpha and beta) fold: Acetyl-CoA synthetase-like superfamily: Acetyl-CoA synthetase-like family: Acetyl-CoA synthetase-like domain: Luciferase species: Firefly (Photinus pyralis) [TaxId: 7054]
Score = 44.1 bits (103), Expect = 1e-05
Identities = 19/105 (18%), Positives = 38/105 (36%), Gaps = 8/105 (7%)
Query: 204 DETIMLRGMRYHPIDIENSVMRAHKKIAECAVF-----TWTNLLVVVVELDGNESEALDL 258
I +G + P ++E+ ++ H I + V L VV L+ ++
Sbjct: 436 KSLIKYKGYQVAPAELES-ILLQHPNIFDAGVAGLPDDDAGELPAAVVVLEHGKTMTEKE 494
Query: 259 VPLVTNAVLEEHHLIVGVAVVVDPGVVPINSRGEKQRMHLRDGFL 303
+ + + + G V VD VP G+ +R+ +
Sbjct: 495 IVDYVASQVTTAKKLRGGVVFVDE--VPKGLTGKLDARKIREILI 537
|
| >d1v25a_ e.23.1.1 (A:) Long chain fatty acid-CoA ligase TT0168 {Thermus thermophilus [TaxId: 274]} Length = 534 | Back information, alignment and structure |
|---|
class: Multi-domain proteins (alpha and beta) fold: Acetyl-CoA synthetase-like superfamily: Acetyl-CoA synthetase-like family: Acetyl-CoA synthetase-like domain: Long chain fatty acid-CoA ligase TT0168 species: Thermus thermophilus [TaxId: 274]
Score = 43.7 bits (102), Expect = 2e-05
Identities = 22/102 (21%), Positives = 37/102 (36%), Gaps = 9/102 (8%)
Query: 204 DETIMLRGMRYHPIDIENSVMRAHKKIAECAVF-----TWTNLLVVVVELDGNESEALDL 258
+ I G +D+EN + H K+ E AV W + VV G + +L
Sbjct: 428 KDLIKSGGEWISSVDLEN-ALMGHPKVKEAAVVAIPHPKWQERPLAVVVPRGEKPTPEEL 486
Query: 259 VPLVTNAVLEEHHLIVGVAVVVDPGVVPINSRGEKQRMHLRD 300
+ A + L + +P S G+ + LR+
Sbjct: 487 NEHLLKAGFAKWQLPDAYVFAEE---IPRTSAGKFLKRALRE 525
|
| >d1amua_ e.23.1.1 (A:) Phenylalanine activating domain of gramicidin synthetase 1 {Bacillus brevis [TaxId: 1393]} Length = 514 | Back information, alignment and structure |
|---|
class: Multi-domain proteins (alpha and beta) fold: Acetyl-CoA synthetase-like superfamily: Acetyl-CoA synthetase-like family: Acetyl-CoA synthetase-like domain: Phenylalanine activating domain of gramicidin synthetase 1 species: Bacillus brevis [TaxId: 1393]
Score = 42.6 bits (99), Expect = 4e-05
Identities = 19/103 (18%), Positives = 40/103 (38%), Gaps = 11/103 (10%)
Query: 203 LDETIMLRGMRYHPIDIENSVMRAHKKIAECAVF-----TWTNLLVVVVELDGNESEALD 257
+D + +RG R ++E+ ++ H I+E AV L + +
Sbjct: 413 IDNQVKIRGHRVELEEVES-ILLKHMYISETAVSVHKDHQEQPYLCAYFVSEKHIPLE-Q 470
Query: 258 LVPLVTNAVLEEHHLIVGVAVVVDPGVVPINSRGEKQRMHLRD 300
L + + ++I + +D +P+ S G+ R L +
Sbjct: 471 LRQFSSEEL--PTYMIPSYFIQLDK--MPLTSNGKIDRKQLPE 509
|
| >d3cw9a1 e.23.1.1 (A:1-503) 4-chlorobenzoyl CoA ligase {Alcaligenes sp. [TaxId: 512]} Length = 503 | Back information, alignment and structure |
|---|
class: Multi-domain proteins (alpha and beta) fold: Acetyl-CoA synthetase-like superfamily: Acetyl-CoA synthetase-like family: Acetyl-CoA synthetase-like domain: 4-chlorobenzoyl CoA ligase species: Alcaligenes sp. [TaxId: 512]
Score = 42.3 bits (98), Expect = 5e-05
Identities = 21/104 (20%), Positives = 36/104 (34%), Gaps = 10/104 (9%)
Query: 203 LDETIMLRGMRYHPIDIENSVMRAHKKIAECAVF-----TWTNLLVVVVEL-DGNESEAL 256
+D+ I+ G HP +IE V+ + E V W + V G A
Sbjct: 401 VDDMIISGGENIHPSEIER-VLGTAPGVTEVVVIGLADQRWGQSVTACVVPRLGETLSAD 459
Query: 257 DLVPLVTNAVLEEHHLIVGVAVVVDPGVVPINSRGEKQRMHLRD 300
L ++ L + ++D +P N+ + R L
Sbjct: 460 ALDTFCRSSELADFKRPKRY-FILDQ--LPKNALNKVLRRQLVQ 500
|
Homologous Domains Detected by HHsearch
Original result of HHsearch against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 316 | |||
| d1pg4a_ | 643 | Acetyl-CoA synthetase {Salmonella enterica [TaxId: | 100.0 | |
| d1ry2a_ | 640 | Acetyl-CoA synthetase {Baker's yeast (Saccharomyce | 100.0 | |
| d1lcia_ | 541 | Luciferase {Firefly (Photinus pyralis) [TaxId: 705 | 100.0 | |
| d1v25a_ | 534 | Long chain fatty acid-CoA ligase TT0168 {Thermus t | 100.0 | |
| d1mdba_ | 536 | Dihydroxybenzoate-AMP ligase DhbE {Bacillus subtil | 100.0 | |
| d1amua_ | 514 | Phenylalanine activating domain of gramicidin synt | 100.0 | |
| d3cw9a1 | 503 | 4-chlorobenzoyl CoA ligase {Alcaligenes sp. [TaxId | 100.0 | |
| d1lcia_ | 541 | Luciferase {Firefly (Photinus pyralis) [TaxId: 705 | 90.73 | |
| d1pg4a_ | 643 | Acetyl-CoA synthetase {Salmonella enterica [TaxId: | 88.59 | |
| d3cw9a1 | 503 | 4-chlorobenzoyl CoA ligase {Alcaligenes sp. [TaxId | 82.97 | |
| d1v25a_ | 534 | Long chain fatty acid-CoA ligase TT0168 {Thermus t | 81.85 | |
| d1ry2a_ | 640 | Acetyl-CoA synthetase {Baker's yeast (Saccharomyce | 81.01 |
| >d1pg4a_ e.23.1.1 (A:) Acetyl-CoA synthetase {Salmonella enterica [TaxId: 28901]} | Back information, alignment and structure |
|---|
class: Multi-domain proteins (alpha and beta) fold: Acetyl-CoA synthetase-like superfamily: Acetyl-CoA synthetase-like family: Acetyl-CoA synthetase-like domain: Acetyl-CoA synthetase species: Salmonella enterica [TaxId: 28901]
Probab=100.00 E-value=1.6e-46 Score=359.87 Aligned_cols=297 Identities=15% Similarity=0.098 Sum_probs=224.3
Q ss_pred CeEEEEeccCCCCCceEEEEeHHHHHHH-HHHHHHHhcCCCCCceEEecCCcCChhhhHHHHhhhhcCceeeeeCCcccc
Q psy14342 1 MLAYLDFSVSTTGMLAGIKMSHAAVTSL-CRSMKLACELYPSRHIALCLDPYCGLGFALWVLSSVYSGHHSILIPPSEVE 79 (316)
Q Consensus 1 ~~a~i~~TSGTTG~PK~V~~t~~~l~~~-~~~~~~~~~~~~~d~~l~~~p~~h~~g~~~~~~~~l~~G~~~v~~~~~~~~ 79 (316)
|+++|+|||||||.||||+++|++++.. ...+...++++++|+++..+|++|++|+...++.+|+.|+++++.+..+..
T Consensus 253 d~a~IlyTSGTTG~PKgV~~sh~~~l~~~~~~~~~~~~~~~~d~~~~~~p~~~~~g~~~~l~~~L~~G~t~vl~~~~~~~ 332 (643)
T d1pg4a_ 253 DPLFILYTSGSTGKPKGVLHTTGGYLVYAATTFKYVFDYHPGDIYWCTADVGWVTGHSYLLYGPLACGATTLMFEGVPNW 332 (643)
T ss_dssp SEEEEEEECCSSSSCEEEEEESHHHHHHHHHHHHHHTTCCTTCEEEECSCTTSHHHHHHTTHHHHHTTCEEEEECSCTTS
T ss_pred CeEEEEeCCCcccCCCEEEEccHHHHHHHHHHHHHhhCCCCCCEEEEeCChHHHHHHHHHHHHHHHhCCEEEEecCCCCC
Confidence 6899999999999999999999986654 455666789999999999999999999988788999999999998766555
Q ss_pred cChHHHHHHHhccceeeEEecccchhhHHhhHHhhhhh--ccccc---ccc--------------------cccccccch
Q psy14342 80 VNPALWLSAVSQYRVRDTFCSYGMLAGIKMSHAAVTSL--CRSMK---LAC--------------------ELYPSRHIA 134 (316)
Q Consensus 80 ~~~~~~~~~~~~~~~t~~~~~~~~~~~l~~~~~~~~~~--~~~~~---ls~--------------------e~~~~yG~t 134 (316)
.+|..++++++++++|+++++|+++..+.......... ..+++ ..+ .+.+.||+|
T Consensus 333 ~~~~~~~~~i~~~~vt~~~~~P~~l~~l~~~~~~~~~~~dl~sLr~i~~~G~pl~~~~~~~~~~~~g~~~~~i~~~yG~T 412 (643)
T d1pg4a_ 333 PTPARMCQVVDKHQVNILYTAPTAIRALMAEGDKAIEGTDRSSLRILGSVGEPINPEAWEWYWKKIGKEKCPVVDTWWQT 412 (643)
T ss_dssp SSTTHHHHHHHHHTCSEEEECHHHHHHHHTTGGGGTTTCCCTTCCEEEEESSCCCHHHHHHHHHHTTTTCSCEEEEBCCG
T ss_pred CCHHHHHHHHHHHCCcEEEehHHHHHHHHhCcchhccccCCCceEEEEEEeCCCCHHHHHHHHHHhCCCCceEEEeechh
Confidence 67899999999999999999999887665443221100 01111 111 167789999
Q ss_pred hccCCCCCCCceEEEEeeeccCcccccCCCce-EEecCc-----------eEEecC-----CCcccCCCcCC--------
Q psy14342 135 LCLDPYCGLGFALWVLSSVYSGHHSILIPPSE-VEVNPA-----------LWLSAV-----SQYRVRDTFCS-------- 189 (316)
Q Consensus 135 e~~~~~~~~~~~~~~~~~~~~g~~~~~~~g~~-~i~d~~-----------l~v~~~-----~gY~~~~~~~~-------- 189 (316)
|++.......+.. .....|..+.|++|++ +++|++ |+++|+ .|||++++.+.
T Consensus 413 E~g~~~~~~~~~~---~~~~~gs~G~p~~g~~v~ivd~~g~~~~~g~~Gel~v~~~~p~~~~~~~~~~~~~~~~~~~~~~ 489 (643)
T d1pg4a_ 413 ETGGFMITPLPGA---IELKAGSATRPFFGVQPALVDNEGHPQEGATEGNLVITDSWPGQARTLFGDHERFEQTYFSTFK 489 (643)
T ss_dssp GGSSCSBCCCTTT---CCBCTTCCBSBCTTCCEEEECTTCCBCCSSEEEEEEECSCCTTCCCEETTCHHHHHHHHHSSST
T ss_pred hccceEEecCCCc---cCCCCCccccccCCCEEEEECCCCCCCCCCceEEEEEecCCCcccccccCChhhchhhhcccCC
Confidence 9986544332210 1123345566899999 888765 899986 68999865432
Q ss_pred -----CCceeeec-Cc---CCcccceeEECCcccChHhHHHHHHHhccccceeEEEeeC-----CcEEEEEEecCCchhh
Q psy14342 190 -----CNGALYQG-AE---RLALDETIMLRGMRYHPIDIENSVMRAHKKIAECAVFTWT-----NLLVVVVELDGNESEA 255 (316)
Q Consensus 190 -----~d~g~~~~-g~---~GR~dd~i~~~G~~v~p~eIE~~l~~~~p~v~~~~v~~~~-----~~~~~~v~~~~~~~~~ 255 (316)
+|.|++++ |. +||+||+||++|++|+|.|||++|.+ ||.|.+|+|++.. +.++++|+++++....
T Consensus 490 g~~~TGDl~~~d~dG~l~i~GR~dd~ik~~G~ri~p~eIE~~l~~-~p~V~eaaVvg~~d~~~ge~~~a~Vv~~~~~~~~ 568 (643)
T d1pg4a_ 490 NMYFSGDGARRDEDGYYWITGRVDDVLNVSGHRLGTAEIESALVA-HPKIAEAAVVGIPHAIKGQAIYAYVTLNHGEEPS 568 (643)
T ss_dssp TSEEEEEEEEECTTSCEEEEEESSSEEEETTEEEEHHHHHHHHHH-STTEEEEEEEEEEETTTEEEEEEEEEECTTCCCC
T ss_pred CeEEcCCEEEECCCceEEEecccccEEEECCEEECHHHHHHHHHh-CCCcceEEEEEEECCCCCeEEEEEEEECCCCCCC
Confidence 25566654 43 99999999999999999999999999 9999999999983 4688888887654444
Q ss_pred cchHHHHHHHHHHh---cCeeecEEEEEcCCCcccCCCchhhHHHHHHHHHc
Q psy14342 256 LDLVPLVTNAVLEE---HHLIVGVAVVVDPGVVPINSRGEKQRMHLRDGFLA 304 (316)
Q Consensus 256 ~~l~~~~~~~l~~~---~~~~~~~~~~~~~~~lP~t~~gKi~r~~l~~~~~~ 304 (316)
+++.+++++.+.+. +..| ..+.+++ +||+|++||++|++|++.+..
T Consensus 569 ~~~~~~i~~~~~~~L~~~~vP-~~i~~v~--~lP~T~sGKi~R~~Lr~~~~~ 617 (643)
T d1pg4a_ 569 PELYAEVRNWVRKEIGPLATP-DVLHWTD--SLPKTRSGKIMRRILRKIAAG 617 (643)
T ss_dssp HHHHHHHHHHHHHHTCGGGCC-SEEEECS--CCCBCTTSCBCHHHHHHHHHT
T ss_pred HHHHHHHHHHHHhhCCcccCc-cEEEEEC--CCCCCCCcCccHHHHHHHhcC
Confidence 44445555555443 3333 4555555 999999999999999998875
|
| >d1ry2a_ e.23.1.1 (A:) Acetyl-CoA synthetase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Multi-domain proteins (alpha and beta) fold: Acetyl-CoA synthetase-like superfamily: Acetyl-CoA synthetase-like family: Acetyl-CoA synthetase-like domain: Acetyl-CoA synthetase species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=100.00 E-value=2.2e-44 Score=345.34 Aligned_cols=298 Identities=16% Similarity=0.143 Sum_probs=217.4
Q ss_pred CeEEEEeccCCCCCceEEEEeHHHHHHHHH-HHHHHhcCCCCCceEEecCCcCChhhhHHHHhhhhcCceeeeeCCcccc
Q psy14342 1 MLAYLDFSVSTTGMLAGIKMSHAAVTSLCR-SMKLACELYPSRHIALCLDPYCGLGFALWVLSSVYSGHHSILIPPSEVE 79 (316)
Q Consensus 1 ~~a~i~~TSGTTG~PK~V~~t~~~l~~~~~-~~~~~~~~~~~d~~l~~~p~~h~~g~~~~~~~~l~~G~~~v~~~~~~~~ 79 (316)
|+++|+|||||||.||||+++|++++.+.. .....+++.++|++++++|++|++|+.+.++.++..|+++++.+.....
T Consensus 240 d~a~i~~TSGTTG~PKgV~~~h~~~~~~~~~~~~~~~~~~~~d~~l~~~pl~~~~g~~~~~~~~l~~G~~~v~~~~~~~~ 319 (640)
T d1ry2a_ 240 DPLFLLYTSGSTGAPKGVQHSTAGYLLGALLTMRYTFDTHQEDVFFTAGDIGWITGHTYVVYGPLLYGCATLVFEGTPAY 319 (640)
T ss_dssp SCCEEEEECCSSSSCEEEEECSHHHHHHHHHHHHHHSCCCSSCEEEECSCTTSHHHHHHTTHHHHHHTSEEEEECSCTTS
T ss_pred cCCEEEECCCCCCCCcceeeccccHHHHHHHHHHhhcCCCcccceeeccchhhhhhHHHHHHHHHHhCCEEEEecCCCCC
Confidence 589999999999999999999999877654 4445678889999999999999999887788999999999998877666
Q ss_pred cChHHHHHHHhccceeeEEecccchhhHHhhHHhhhh--hccccc---cccc--------------------ccccccch
Q psy14342 80 VNPALWLSAVSQYRVRDTFCSYGMLAGIKMSHAAVTS--LCRSMK---LACE--------------------LYPSRHIA 134 (316)
Q Consensus 80 ~~~~~~~~~~~~~~~t~~~~~~~~~~~l~~~~~~~~~--~~~~~~---ls~e--------------------~~~~yG~t 134 (316)
.++..+++.++++++|+++.+|+++..+......... ...+++ .+++ ++..||+|
T Consensus 320 ~~~~~~~~~i~~~~vt~~~~~P~~~~~l~~~~~~~~~~~~l~sLr~v~~gG~~l~~~~~~~~~~~~g~~~~~i~~~yg~t 399 (640)
T d1ry2a_ 320 PNYSRYWDIIDEHKVTQFYVAPTALRLLKRAGDSYIENHSLKSLRCLGSVGEPIAAEVWEWYSEKIGKNEIPIVDTYWQT 399 (640)
T ss_dssp SCTTHHHHHHHHTTCSEEEECHHHHHHHTTSCTTSSSSCCCTTCCEEEECSSCCCHHHHHHHHHTTSCSSSCEEECBCCT
T ss_pred CCHHHHHHHHHHhCccEEEcChHHHHHHHhccccccccCCCCceEEEEEecccCcHHHHHHHHHhcCCCcceEEeeeccc
Confidence 6889999999999999999999887665443222100 001111 1111 56788888
Q ss_pred hccCCCCCCCceEEEEeeeccCcccccCCCce-EEecCc-------------eEEecC-----CCcccCCCcCCC-----
Q psy14342 135 LCLDPYCGLGFALWVLSSVYSGHHSILIPPSE-VEVNPA-------------LWLSAV-----SQYRVRDTFCSC----- 190 (316)
Q Consensus 135 e~~~~~~~~~~~~~~~~~~~~g~~~~~~~g~~-~i~d~~-------------l~v~~~-----~gY~~~~~~~~~----- 190 (316)
|++.......+.. ......|+.|.|+||++ +++|++ |+++++ .|||++++.+..
T Consensus 400 e~~~~~~~~~~~~--~~~~~~gs~G~p~~g~~~~i~d~~~~~~~~~~~~~Gel~i~~~~p~~~~gy~~~~e~t~~~~~~~ 477 (640)
T d1ry2a_ 400 ESGSHLVTPLAGG--VTPMKPGSASFPFFGIDAVVLDPNTGEELNTSHAEGVLAVKAAWPSFARTIWKNHDRYLDTYLNP 477 (640)
T ss_dssp TTCSCSEECCTTT--CCCCCTTCCCEECTTCCEEEECSSSTTCEECSSCEEEEEESSCCTTSCCEETTCHHHHHHHHTSS
T ss_pred ccccccccccCCC--cCCCCCcccccccCCceEEEEeCCCCcccCCCCceEEEEEEecCCCcccccccCHHHHHhhhccC
Confidence 8865432211100 01123345666899999 888864 788874 899998765421
Q ss_pred --------Cceeeec-Cc---CCcccceeEECCcccChHhHHHHHHHhccccceeEEEeeC-----CcEEEEEEecCCch
Q psy14342 191 --------NGALYQG-AE---RLALDETIMLRGMRYHPIDIENSVMRAHKKIAECAVFTWT-----NLLVVVVELDGNES 253 (316)
Q Consensus 191 --------d~g~~~~-g~---~GR~dd~i~~~G~~v~p~eIE~~l~~~~p~v~~~~v~~~~-----~~~~~~v~~~~~~~ 253 (316)
|.|++++ |. +||.||+||++|++|+|.|||++|.+ ||.|.+|+|+++. +.+++++++++...
T Consensus 478 ~~gw~~TGDlg~~d~dG~l~i~GR~dd~Ik~~G~~I~p~eIE~~l~~-~p~V~~a~Vvg~~d~~~ge~~~a~Vv~~~~~~ 556 (640)
T d1ry2a_ 478 YPGYYFTGDGAAKDKDGYIWILGRVDDVVNVSGHRLSTAEIEAAIIE-DPIVAECAVVGFNDDLTGQAVAAFVVLKNKSS 556 (640)
T ss_dssp STTSEEEEEEEEECTTCCEEECSCTTSCBCSSSCCBCHHHHHHHHHS-STTEEEEEEECCCCCTTSCCCEEEEEEC----
T ss_pred CCCeEEcCCceeECCCCCEEEEEcCCCEEEECCEEECHHHHHHHHHh-CCCccEEEEEEEECCCCCeEEEEEEEEcCCCC
Confidence 5566654 43 99999999999999999999999999 9999999999973 46788887765432
Q ss_pred h-------hcchHHHHHHHHHH---hcCeeecEEEEEcCCCcccCCCchhhHHHHHHHHHc
Q psy14342 254 E-------ALDLVPLVTNAVLE---EHHLIVGVAVVVDPGVVPINSRGEKQRMHLRDGFLA 304 (316)
Q Consensus 254 ~-------~~~l~~~~~~~l~~---~~~~~~~~~~~~~~~~lP~t~~gKi~r~~l~~~~~~ 304 (316)
. ..++.+++++.+.+ .+..| ..+.+++ +||+|++|||+|++||+.+..
T Consensus 557 ~~~~~~~~~~~l~~~l~~~~~~~L~~~~~P-~~i~~v~--~lP~T~sGKi~R~~Lr~~~~~ 614 (640)
T d1ry2a_ 557 WSTATDDELQDIKKHLVFTVRKDIGPFAAP-KLIILVD--DLPKTRSGKIMRRILRKILAG 614 (640)
T ss_dssp --------CCSHHHHHHHHHHHHTCTTTSC-SEEEECS--CCCBCTTSCBCHHHHHHSCC-
T ss_pred ccccchHHHHHHHHHHHHHHHhhCCCCCCc-eEEEEeC--CCCCCCCcCccHHHHHHHHhC
Confidence 1 13445555555543 33444 4666665 899999999999999988754
|
| >d1lcia_ e.23.1.1 (A:) Luciferase {Firefly (Photinus pyralis) [TaxId: 7054]} | Back information, alignment and structure |
|---|
class: Multi-domain proteins (alpha and beta) fold: Acetyl-CoA synthetase-like superfamily: Acetyl-CoA synthetase-like family: Acetyl-CoA synthetase-like domain: Luciferase species: Firefly (Photinus pyralis) [TaxId: 7054]
Probab=100.00 E-value=5.1e-41 Score=314.94 Aligned_cols=291 Identities=17% Similarity=0.203 Sum_probs=200.5
Q ss_pred CeEEEEeccCCCCCceEEEEeHHHHHHHHHHHHHHh---cCCCCCceEEecCCcCChhhhHHHHhhhhcCceeeeeCCcc
Q psy14342 1 MLAYLDFSVSTTGMLAGIKMSHAAVTSLCRSMKLAC---ELYPSRHIALCLDPYCGLGFALWVLSSVYSGHHSILIPPSE 77 (316)
Q Consensus 1 ~~a~i~~TSGTTG~PK~V~~t~~~l~~~~~~~~~~~---~~~~~d~~l~~~p~~h~~g~~~~~~~~l~~G~~~v~~~~~~ 77 (316)
++++|+|||||||.||+|.+||++++.........+ .+.++++++.++|++|..++.. .+..+..++..+.....
T Consensus 188 ~~a~i~~TSGTTG~PKgV~~s~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~-~~~~~~~~~~~~~~~~~- 265 (541)
T d1lcia_ 188 TIALIMNSSGSTGLPKGVALPHRTACVRFSHARDPIFGNQIIPDTAILSVVPFHHGFGMFT-TLGYLICGFRVVLMYRF- 265 (541)
T ss_dssp SEEEEEEC-----CCCEEEEEHHHHHHHHHHHTCTTTSCCCCTTCEEEECSCTTSHHHHHH-HHHHHHHTCEEEECSSC-
T ss_pred ceEEEEeeccccccccccccccchhhhhhhhhhhhcccccccccccccccccccccccccc-ccccccccccccccccc-
Confidence 479999999999999999999999987766554433 4567899999999999988877 66667777776665433
Q ss_pred cccChHHHHHHHhccceeeEEecccchhhHHhhHHhhhhh---cccccccc------------------cccccccchhc
Q psy14342 78 VEVNPALWLSAVSQYRVRDTFCSYGMLAGIKMSHAAVTSL---CRSMKLAC------------------ELYPSRHIALC 136 (316)
Q Consensus 78 ~~~~~~~~~~~~~~~~~t~~~~~~~~~~~l~~~~~~~~~~---~~~~~ls~------------------e~~~~yG~te~ 136 (316)
++...+..+.+++++.++..|..+..+.......... .+.+..++ .+.+.||+||+
T Consensus 266 ---~~~~~~~~~~~~~~t~~~~~p~~~~~~~~~~~~~~~~~~~l~~v~~gG~~~~~~~~~~~~~~~~~~~~~~~YG~TE~ 342 (541)
T d1lcia_ 266 ---EEELFLRSLQDYKIQSALLVPTLFSFFAKSTLIDKYDLSNLHEIASGGAPLSKEVGEAVAKRFHLPGIRQGYGLTET 342 (541)
T ss_dssp ---CHHHHHHHHHHTTCSEEECCHHHHHHHHHCSCGGGSCCTTCCEEECTTCCCCHHHHHHHHHHTTCSCCBCEECCGGG
T ss_pred ---ccchhHHHHhhhhccccccCccccccccccccccccccccceEEEecccccccccccccccccCCceeeecCCcccc
Confidence 4667788999999999888887776544333221110 11111112 17789999999
Q ss_pred cCCCCCCCceEEEEeeeccCcccccCCCce-EEecCc------------eEEecC---CCcccCCCcC-----------C
Q psy14342 137 LDPYCGLGFALWVLSSVYSGHHSILIPPSE-VEVNPA------------LWLSAV---SQYRVRDTFC-----------S 189 (316)
Q Consensus 137 ~~~~~~~~~~~~~~~~~~~g~~~~~~~g~~-~i~d~~------------l~v~~~---~gY~~~~~~~-----------~ 189 (316)
+........ .....++.|.|+||++ +++|++ |+++|+ .|||+++..+ +
T Consensus 343 ~~~~~~~~~-----~~~~~~svG~p~~~~~~~i~d~d~~~~~~~g~~Gel~v~g~~~~~gY~~~~~~~~~~~~~~~~~~T 417 (541)
T d1lcia_ 343 TSAILITPE-----GDDKPGAVGKVVPFFEAKVVDLDTGKTLGVNQRGELCVRGPMIMSGYVNNPEATNALIDKDGWLHS 417 (541)
T ss_dssp SSCSEECCC-----C---CCCCBEECTTCEEEEECTTTCCBCCTTCCEEEEEESTTSCSEETTBHHHHHHHBCTTSCEEE
T ss_pred CceEEecCc-----ccCCCCccccccCCCEEEEEECCCCcCCCCCCeEEEEEccCccCCeeCCChhhhhhcccCCccccC
Confidence 876554432 1222345566899999 888754 999999 8999876543 2
Q ss_pred CCceeeec-Cc---CCcccceeEECCcccChHhHHHHHHHhccccceeEEEeeC-----CcEEEEEEecCCc-hhhcchH
Q psy14342 190 CNGALYQG-AE---RLALDETIMLRGMRYHPIDIENSVMRAHKKIAECAVFTWT-----NLLVVVVELDGNE-SEALDLV 259 (316)
Q Consensus 190 ~d~g~~~~-g~---~GR~dd~i~~~G~~v~p~eIE~~l~~~~p~v~~~~v~~~~-----~~~~~~v~~~~~~-~~~~~l~ 259 (316)
+|.|++++ |. .||.||+||++|++|+|.|||++|.+ ||.|.+|+|+++. +.+++++++.++. .+.+++.
T Consensus 418 GDl~~~~~~G~~~~~GR~~d~i~~~G~~v~~~~IE~~l~~-~p~V~~~~v~~~~~~~~g~~~~a~v~~~~~~~~~~~~l~ 496 (541)
T d1lcia_ 418 GDIAYWDEDEHFFIVDRLKSLIKYKGYQVAPAELESILLQ-HPNIFDAGVAGLPDDDAGELPAAVVVLEHGKTMTEKEIV 496 (541)
T ss_dssp EEEEEECTTCCEEEC-----CEEETTEEECHHHHHHHHHT-STTEEEEEEEEEEETTTEEEEEEEEEECTTCCCCHHHHH
T ss_pred CCeeEEcCCeEEEEeeeecCEEEECCEEECHHHHHHHHHh-CCCccEEEEEEEECCCCCEEEEEEEEECCCCCCCHHHHH
Confidence 26677754 43 99999999999999999999999999 9999999999873 3677777776543 3446788
Q ss_pred HHHHHHHHHhcCeeecEEEEEcCCCcccCCCchhhHHHHHHHHHcC
Q psy14342 260 PLVTNAVLEEHHLIVGVAVVVDPGVVPINSRGEKQRMHLRDGFLAD 305 (316)
Q Consensus 260 ~~~~~~l~~~~~~~~~~~~~~~~~~lP~t~~gKi~r~~l~~~~~~~ 305 (316)
+++++++...+.++ ..+++++ +||+|++|||+|++|++.+.++
T Consensus 497 ~~~~~~l~~~~~~p-~~i~~v~--~lP~t~~GKi~r~~l~~~~~~~ 539 (541)
T d1lcia_ 497 DYVASQVTTAKKLR-GGVVFVD--EVPKGLTGKLDARKIREILIKA 539 (541)
T ss_dssp HHHHHHSCGGGSCT-TEEEEES--SCCC-----CCHHHHHHHHHHH
T ss_pred HHHHHhCCccccCC-cEEEEeC--CCCcCCCcCccHHHHHHHHHHh
Confidence 88888776443344 5667765 8999999999999999998763
|
| >d1v25a_ e.23.1.1 (A:) Long chain fatty acid-CoA ligase TT0168 {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Multi-domain proteins (alpha and beta) fold: Acetyl-CoA synthetase-like superfamily: Acetyl-CoA synthetase-like family: Acetyl-CoA synthetase-like domain: Long chain fatty acid-CoA ligase TT0168 species: Thermus thermophilus [TaxId: 274]
Probab=100.00 E-value=3.1e-41 Score=316.45 Aligned_cols=295 Identities=15% Similarity=0.142 Sum_probs=182.8
Q ss_pred CeEEEEeccCCCCCceEEEEeHHHHHHHHHHH--HHHhcCCCCCceEEecCCcCChhhhHHHHhhhhcCceeeeeCCccc
Q psy14342 1 MLAYLDFSVSTTGMLAGIKMSHAAVTSLCRSM--KLACELYPSRHIALCLDPYCGLGFALWVLSSVYSGHHSILIPPSEV 78 (316)
Q Consensus 1 ~~a~i~~TSGTTG~PK~V~~t~~~l~~~~~~~--~~~~~~~~~d~~l~~~p~~h~~g~~~~~~~~l~~G~~~v~~~~~~~ 78 (316)
++++|+|||||||.||+|.++|.++...+... ...+.....|++++++|++|..++.. .+..+..|+++++..+.
T Consensus 170 ~~a~i~~TSGTTG~PKgv~~s~~~l~~~~~~~~~~~~~~~~~~d~~~~~~p~~~~~~~~~-~~~~~~~g~~~v~~~~~-- 246 (534)
T d1v25a_ 170 AACGMAYTTGTTGLPKGVVYSHRALVLHSLAASLVDGTALSEKDVVLPVVPMFHVNAWCL-PYAATLVGAKQVLPGPR-- 246 (534)
T ss_dssp SEEEEEEECSSSSSCEEEEEEHHHHHHHHHHTTSTTTTCCCTTCEEEECSCTTSHHHHTH-HHHHHHHTCEEEECTTC--
T ss_pred CcEEEEEecCCCCCccccccccchhhhhhhhhhhhcccccccccccccccchhhhccccc-cceeeeecceeeecccc--
Confidence 57999999999999999999999998655433 33345567899999999999988888 66777778888877654
Q ss_pred ccChHHHHHHHhccceeeEEecccchhhHHhhHHhhhhhccc---ccccc----------------cccccccchhccCC
Q psy14342 79 EVNPALWLSAVSQYRVRDTFCSYGMLAGIKMSHAAVTSLCRS---MKLAC----------------ELYPSRHIALCLDP 139 (316)
Q Consensus 79 ~~~~~~~~~~~~~~~~t~~~~~~~~~~~l~~~~~~~~~~~~~---~~ls~----------------e~~~~yG~te~~~~ 139 (316)
.++..++.+++++++|.+..+|..+..+............. +-.++ ++++.||+||++..
T Consensus 247 -~~~~~~~~~~~~~~vt~~~~~p~~~~~~~~~~~~~~~~~~~lr~~~~gG~~~~~~~~~~~~~~~~~i~~~yG~te~~~~ 325 (534)
T d1v25a_ 247 -LDPASLVELFDGEGVTFTAGVPTVWLALADYLESTGHRLKTLRRLVVGGSAAPRSLIARFERMGVEVRQGYGLTETSPV 325 (534)
T ss_dssp -CSHHHHHHHHHHTTCCEEEECHHHHHHHHHHHHHHTCCCSSCCEEEECSSCCCHHHHHHHHHTTCEEEEEEECGGGSSE
T ss_pred -ccccccchhhhhccccccccCchhhhhhhhhhccccccccceeEEEEecCCCCHHHHHHHHHhCCeeeeeccccccccc
Confidence 26788999999999999999998877655544332211111 22222 27889999999765
Q ss_pred CCCCCceE-----EE-EeeeccCcccccCCCce-EEecCc-------------eEEecC---CCcccCCCcCCC------
Q psy14342 140 YCGLGFAL-----WV-LSSVYSGHHSILIPPSE-VEVNPA-------------LWLSAV---SQYRVRDTFCSC------ 190 (316)
Q Consensus 140 ~~~~~~~~-----~~-~~~~~~g~~~~~~~g~~-~i~d~~-------------l~v~~~---~gY~~~~~~~~~------ 190 (316)
.....+.. .. ......++.|.|+||++ +++|++ |+++|+ .|||++++.+..
T Consensus 326 ~~~~~~~~~~~~~~~~~~~~~~~~~G~p~~g~~~~i~d~~~~~~~~~~~~~Gel~v~g~~v~~gY~~~~~~t~~~~~~dg 405 (534)
T d1v25a_ 326 VVQNFVKSHLESLSEEEKLTLKAKTGLPIPLVRLRVADEEGRPVPKDGKALGEVQLKGPWITGGYYGNEEATRSALTPDG 405 (534)
T ss_dssp EEECCCCGGGTTSCHHHHHHHHTSCBEECTTCEEEEECTTSCBCCSSSCCCEEEEEESTTSBSSCBTCHHHHHTTBCTTS
T ss_pred eeecccCccccccCccccccccccceeccCCcEEEEECCCCCCCCCCCCeeEEEEEcCCcccceecCChhhhhhhcccCC
Confidence 43222100 00 00011235566899999 888764 999999 899998655422
Q ss_pred -----Cceeeec-Cc---CCcccceeEECCcccChHhHHHHHHHhccccceeEEEeeC-----CcEEEEEEecCCchhhc
Q psy14342 191 -----NGALYQG-AE---RLALDETIMLRGMRYHPIDIENSVMRAHKKIAECAVFTWT-----NLLVVVVELDGNESEAL 256 (316)
Q Consensus 191 -----d~g~~~~-g~---~GR~dd~i~~~G~~v~p~eIE~~l~~~~p~v~~~~v~~~~-----~~~~~~v~~~~~~~~~~ 256 (316)
|.|++++ |. .||.||+||++|++|+|.|||++|.+ ||+|.+|+|+++. +.++++++........+
T Consensus 406 ~~~TGDlg~~~~~G~l~~~GR~~~~i~~~G~~v~~~eIE~~l~~-~~~V~~a~v~~~~~~~~~~~l~a~vv~~~~~~~~~ 484 (534)
T d1v25a_ 406 FFRTGDIAVWDEEGYVEIKDRLKDLIKSGGEWISSVDLENALMG-HPKVKEAAVVAIPHPKWQERPLAVVVPRGEKPTPE 484 (534)
T ss_dssp CEEEEEEEEECTTCCEEEEEESSCEEEETTEEEEHHHHHCC-----------CEEEEECSSSSEEEEECC----------
T ss_pred CCccCceeEECCCccEEEecccccEEEECCEEECHHHHHHHHHh-CCCcceEEEEEEECCCCCeEEEEEEEeCCCCCCHH
Confidence 5566654 43 99999999999999999999999999 9999999999873 35666666655444445
Q ss_pred chHHH-HHHHHHHhcCeeecEEEEEcCCCcccCCCchhhHHHHHHHHHc
Q psy14342 257 DLVPL-VTNAVLEEHHLIVGVAVVVDPGVVPINSRGEKQRMHLRDGFLA 304 (316)
Q Consensus 257 ~l~~~-~~~~l~~~~~~~~~~~~~~~~~~lP~t~~gKi~r~~l~~~~~~ 304 (316)
++.+. +++.+. .+..| ..+.+++ +||+|++|||+|++||++|.+
T Consensus 485 ~~~~~~~~~~l~-~~~~P-~~i~~~~--~lP~t~~GKi~R~~lr~~~~~ 529 (534)
T d1v25a_ 485 ELNEHLLKAGFA-KWQLP-DAYVFAE--EIPRTSAGKFLKRALREQYKN 529 (534)
T ss_dssp ---------CCC-TTTSC-SBC----------------CCTTHHHHSTT
T ss_pred HHHHHHHHhcCC-cCCCc-cEEEEEC--CCCCCCCccccHHHHHHHHHh
Confidence 55554 333444 45554 3455555 899999999999999998865
|
| >d1mdba_ e.23.1.1 (A:) Dihydroxybenzoate-AMP ligase DhbE {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Multi-domain proteins (alpha and beta) fold: Acetyl-CoA synthetase-like superfamily: Acetyl-CoA synthetase-like family: Acetyl-CoA synthetase-like domain: Dihydroxybenzoate-AMP ligase DhbE species: Bacillus subtilis [TaxId: 1423]
Probab=100.00 E-value=2.6e-38 Score=296.00 Aligned_cols=293 Identities=14% Similarity=0.098 Sum_probs=206.0
Q ss_pred CeEEEEeccCCCCCceEEEEeHHHHHHHHHHHHHHhcCCCCCceEEecCCcCChhhhHHHHhhhhcCceeeeeCCccccc
Q psy14342 1 MLAYLDFSVSTTGMLAGIKMSHAAVTSLCRSMKLACELYPSRHIALCLDPYCGLGFALWVLSSVYSGHHSILIPPSEVEV 80 (316)
Q Consensus 1 ~~a~i~~TSGTTG~PK~V~~t~~~l~~~~~~~~~~~~~~~~d~~l~~~p~~h~~g~~~~~~~~l~~G~~~v~~~~~~~~~ 80 (316)
|+++|+|||||||.||+|++||+++..++......+++.++|+++.++|++|.+++...++..+..++..++..+. .
T Consensus 183 d~a~i~~TSGTTG~PKgV~~s~~~~~~~~~~~~~~~~~~~~d~~l~~~~~~~~~~l~~~~~~~~~~~g~~~~~~~~---~ 259 (536)
T d1mdba_ 183 DVAFLQLSGGSTGLSKLIPRTHDDYIYSLKRSVEVCWLDHSTVYLAALPMAHNYPLSSPGVLGVLYAGGRVVLSPS---P 259 (536)
T ss_dssp SEEEEEECCCSSSSCCEEEEEHHHHHHHHHHHHHHHTCCTTCEEEECSCTTSHHHHHSSHHHHHHHTTCEEEECSS---S
T ss_pred chHHhhhcccccccceecccccccccccccccccccccccccccccccccccccceeeccccccccccccccccCC---C
Confidence 5899999999999999999999999999999999999999999999999999999765455555554444444333 2
Q ss_pred ChHHHHHHHhccceeeEEecccchhhHHhhHHhhhhh---ccccccccc-----------------ccccccchhccCCC
Q psy14342 81 NPALWLSAVSQYRVRDTFCSYGMLAGIKMSHAAVTSL---CRSMKLACE-----------------LYPSRHIALCLDPY 140 (316)
Q Consensus 81 ~~~~~~~~~~~~~~t~~~~~~~~~~~l~~~~~~~~~~---~~~~~ls~e-----------------~~~~yG~te~~~~~ 140 (316)
+|..++..+++++++.+..+|..+..+.......... .+.+..+++ ....|+.+|.+...
T Consensus 260 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 339 (536)
T d1mdba_ 260 SPDDAFPLIEREKVTITALVPPLAMVWMDAASSRRDDLSSLQVLQVGGAKFSAEAARRVKAVFGCTLQQVFGMAEGLVNY 339 (536)
T ss_dssp SHHHHHHHHHHHTCSEEEECHHHHHHHHHHHHHCCCCCTTCCEEEEESSCCCHHHHTTHHHHTCSEEEEEEECTTSCEEE
T ss_pred CHHHHHHHHhhhccccccccchhhhhhhhhccccccccCcceeEEEeccccccccccchhhccCceeeeccccccccccc
Confidence 7889999999999999988887765444333322111 111122221 34445555443222
Q ss_pred CCCCceEEEEeeeccCcccccCCCce--EEecCc-----------eEEecC---CCcccCCCcCCC-----------Cce
Q psy14342 141 CGLGFALWVLSSVYSGHHSILIPPSE--VEVNPA-----------LWLSAV---SQYRVRDTFCSC-----------NGA 193 (316)
Q Consensus 141 ~~~~~~~~~~~~~~~g~~~~~~~g~~--~i~d~~-----------l~v~~~---~gY~~~~~~~~~-----------d~g 193 (316)
..... ......+..+.|+++.. .+.+++ |+++|+ .||++++..+.. |.|
T Consensus 340 ~~~~~----~~~~~~~~~g~p~~~~~~~~v~~~~g~~~~~~~~Gel~v~g~~~~~gY~~~~~~~~~~~~~~~~~~tGD~~ 415 (536)
T d1mdba_ 340 TRLDD----PEEIIVNTQGKPMSPYDESRVWDDHDRDVKPGETGHLLTRGPYTIRGYYKAEEHNAASFTEDGFYRTGDIV 415 (536)
T ss_dssp CCTTS----CHHHHHHCCCEESSTTCEEEEECTTSCBCCTTCCEEEEEECTTSCSSCTTCHHHHHHHBCTTSCEEEEEEE
T ss_pred ccccc----ccccccCCcccCCCCcceEEEEcCCCCeecccccceeecCCCccccccccccccccccccccCccccCccc
Confidence 11110 01111223344565544 443332 999999 899997655322 455
Q ss_pred eeec-Cc---CCcccceeEECCcccChHhHHHHHHHhccccceeEEEeeC-----CcEEEEEEecCCchhhcchHHHHHH
Q psy14342 194 LYQG-AE---RLALDETIMLRGMRYHPIDIENSVMRAHKKIAECAVFTWT-----NLLVVVVELDGNESEALDLVPLVTN 264 (316)
Q Consensus 194 ~~~~-g~---~GR~dd~i~~~G~~v~p~eIE~~l~~~~p~v~~~~v~~~~-----~~~~~~v~~~~~~~~~~~l~~~~~~ 264 (316)
++++ |. .||.||+||++|++|+|.|||++|.+ ||+|.+|+|++.. +.++++++..+...+.+++.+.+++
T Consensus 416 ~~~~dG~l~~~GR~~d~i~~~G~~i~p~~IE~~l~~-~p~V~~a~vvg~~~~~~g~~~~a~v~~~~~~~~~~~l~~~l~~ 494 (536)
T d1mdba_ 416 RLTRDGYIVVEGRAKDQINRGGEKVAAEEVENHLLA-HPAVHDAAMVSMPDQFLGERSCVFIIPRDEAPKAAELKAFLRE 494 (536)
T ss_dssp EECTTSCEEEEEEGGGCEECSSCEECHHHHHHHHTT-STTEEEEEEEEEEETTTEEEEEEEEEESSSCCCHHHHHHHHHH
T ss_pred cccCCCceecCCCcceEEEECCEEECHHHHHHHHHh-CCCccEEEEEEEEcCCCCeEEEEEEEECCCCCCHHHHHHHHHh
Confidence 5544 32 99999999999999999999999999 9999999999873 3577777777666666777887776
Q ss_pred HHHHhcCeeecEEEEEcCCCcccCCCchhhHHHHHHHHHc
Q psy14342 265 AVLEEHHLIVGVAVVVDPGVVPINSRGEKQRMHLRDGFLA 304 (316)
Q Consensus 265 ~l~~~~~~~~~~~~~~~~~~lP~t~~gKi~r~~l~~~~~~ 304 (316)
+....+..| ..+.+++ +||+|++|||+|++|++.+.+
T Consensus 495 ~~l~~~~~P-~~i~~v~--~lP~t~~GKi~r~~L~~~~~~ 531 (536)
T d1mdba_ 495 RGLAAYKIP-DRVEFVE--SFPQTGVGKVSKKALREAISE 531 (536)
T ss_dssp TTCCGGGSC-SEEEECS--SCCBCTTSCBCHHHHHHHHHH
T ss_pred cCCCcCcCc-cEEEEEC--CCCcCCCcCccHHHHHHHHHH
Confidence 522244444 4566655 899999999999999999875
|
| >d1amua_ e.23.1.1 (A:) Phenylalanine activating domain of gramicidin synthetase 1 {Bacillus brevis [TaxId: 1393]} | Back information, alignment and structure |
|---|
class: Multi-domain proteins (alpha and beta) fold: Acetyl-CoA synthetase-like superfamily: Acetyl-CoA synthetase-like family: Acetyl-CoA synthetase-like domain: Phenylalanine activating domain of gramicidin synthetase 1 species: Bacillus brevis [TaxId: 1393]
Probab=100.00 E-value=1.6e-37 Score=289.53 Aligned_cols=287 Identities=14% Similarity=0.103 Sum_probs=202.9
Q ss_pred CeEEEEeccCCCCCceEEEEeHHHHHHHHHHHHHHhcCCCCCceEEecCCcCChhhhHHHHhhhhcCceeeeeCCccccc
Q psy14342 1 MLAYLDFSVSTTGMLAGIKMSHAAVTSLCRSMKLACELYPSRHIALCLDPYCGLGFALWVLSSVYSGHHSILIPPSEVEV 80 (316)
Q Consensus 1 ~~a~i~~TSGTTG~PK~V~~t~~~l~~~~~~~~~~~~~~~~d~~l~~~p~~h~~g~~~~~~~~l~~G~~~v~~~~~~~~~ 80 (316)
|+++|+|||||||.||+|.+||.++..........++...+|+++.++|++|..+++. ++.++..|+++++..+.. ..
T Consensus 167 d~a~i~~TSGTTG~PK~v~~s~~~~~~~~~~~~~~~~~~~~d~~l~~~p~~~~~~~~~-~~~~l~~~~~~~~~~~~~-~~ 244 (514)
T d1amua_ 167 DLAYVIYTSGTTGNPKGTMLEHKGISNLKVFFENSLNVTEKDRIGQFASISFDASVWE-MFMALLTGASLYIILKDT-IN 244 (514)
T ss_dssp SEEEEEEEC-----CEEEEEESHHHHHHHHHHHHTSCCCTTCEEEECSCTTSTHHHHH-HHHHHTTTCEEEECCHHH-HT
T ss_pred cceEEEEccCCCCCcccccccccccccccccccccccccccccccceecccccccccc-cccccccccccccccccc-cc
Confidence 5899999999999999999999999999999999999999999999999999998887 778888888888775443 34
Q ss_pred ChHHHHHHHhccceeeEEecccchhhHHhhHHhhhhhcccccccc---------------cccccccchhccCCCCCCCc
Q psy14342 81 NPALWLSAVSQYRVRDTFCSYGMLAGIKMSHAAVTSLCRSMKLAC---------------ELYPSRHIALCLDPYCGLGF 145 (316)
Q Consensus 81 ~~~~~~~~~~~~~~t~~~~~~~~~~~l~~~~~~~~~~~~~~~ls~---------------e~~~~yG~te~~~~~~~~~~ 145 (316)
+...+++.+..+..+.+..+|......... ... ..+.+..++ .+++.||+||++.......+
T Consensus 245 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~-~l~~~~~~G~~~~~~~~~~~~~~~~~~~~yG~tE~~~~~~~~~~ 321 (514)
T d1amua_ 245 DFVKFEQYINQKEITVITLPPTYVVHLDPE--RIL-SIQTLITAGSATSPSLVNKWKEKVTYINAYGPTETTICATTWVA 321 (514)
T ss_dssp CHHHHHHHHHHTTCCEEEECHHHHTTSCTT--TCC-SCSEEEEESSCCCHHHHHHHTTTSEEEEEECCGGGSSCSEEEEC
T ss_pred chhhhhhhhhhhhcccccceeeeccccccc--ccc-cccEEEEecccCCHHHhhhhccceeEEEeeccccCceeeeeccc
Confidence 566788889899888766655433211110 000 011122222 28889999999764432211
Q ss_pred eEEEEeeeccCcccccCCCce-EEecCc-----------eEEecC---CCcccCCCcC-----------------CCCce
Q psy14342 146 ALWVLSSVYSGHHSILIPPSE-VEVNPA-----------LWLSAV---SQYRVRDTFC-----------------SCNGA 193 (316)
Q Consensus 146 ~~~~~~~~~~g~~~~~~~g~~-~i~d~~-----------l~v~~~---~gY~~~~~~~-----------------~~d~g 193 (316)
.. ......++.+.+.++.. .+.|++ |+++|| .|||+++..+ ++|.|
T Consensus 322 ~~--~~~~~~~~~~~~~~~~~v~~~d~~~~~~~~g~~GEl~v~~~~~~~gY~~~~~~~~~~~~~~~~~~~~~~~~TGD~g 399 (514)
T d1amua_ 322 TK--ETIGHSVPIGAPIQNTQIYIVDENLQLKSVGEAGELCIGGEGLARGYWKRPELTSQKFVDNPFVPGEKLYKTGDQA 399 (514)
T ss_dssp CS--SCCCSSCCCBEECTTEEEEEECTTSCBCCTTCEEEEEEEETTCCCEETTCHHHHHHHEEECSSSTTSEEEEEEEEE
T ss_pred cc--cccCcccccccceeeeeEeeecccceecCCCCeeEEEEccCcccccccccccccceeeEeccccCCCceEEECCEE
Confidence 00 01111223344677777 666554 999999 9999876542 11455
Q ss_pred eeec-Cc---CCcccceeEECCcccChHhHHHHHHHhccccceeEEEeeC-----CcEEEEEEecCCchhhcchHHHHHH
Q psy14342 194 LYQG-AE---RLALDETIMLRGMRYHPIDIENSVMRAHKKIAECAVFTWT-----NLLVVVVELDGNESEALDLVPLVTN 264 (316)
Q Consensus 194 ~~~~-g~---~GR~dd~i~~~G~~v~p~eIE~~l~~~~p~v~~~~v~~~~-----~~~~~~v~~~~~~~~~~~l~~~~~~ 264 (316)
++++ |. +||.||+||++|+||+|.+||+.|.+ ||+|.+|+|++.. +.+++++...+. .+.+++.+.+++
T Consensus 400 ~~d~~G~l~i~GR~~d~i~~~G~~i~p~~IE~~l~~-~~~V~~~~V~~~~~~~~g~~~~a~v~~~~~-~~~~~l~~~~~~ 477 (514)
T d1amua_ 400 RWLSDGNIEYLGRIDNQVKIRGHRVELEEVESILLK-HMYISETAVSVHKDHQEQPYLCAYFVSEKH-IPLEQLRQFSSE 477 (514)
T ss_dssp EECTTSCEEEEEEGGGEEEETTEEEEHHHHHHHHTT-STTEEEEEEEEEECTTSCEEEEEEEEESSC-CCHHHHHHHHHH
T ss_pred EECCCCcEEEEecccCEEEECCEEECHHHHHHHHHh-CCCccEEEEEEEECCCCCEEEEEEEEcCCC-CCHHHHHHHHHh
Confidence 5554 33 99999999999999999999999999 9999999999984 256666655543 345677887877
Q ss_pred HHHHhcCeeecEEEEEcCCCcccCCCchhhHHHHHH
Q psy14342 265 AVLEEHHLIVGVAVVVDPGVVPINSRGEKQRMHLRD 300 (316)
Q Consensus 265 ~l~~~~~~~~~~~~~~~~~~lP~t~~gKi~r~~l~~ 300 (316)
++. .+..| ..+.+++ +||+|++|||+|++||+
T Consensus 478 ~l~-~~~~p-~~i~~v~--~lP~t~~GKi~R~~L~~ 509 (514)
T d1amua_ 478 ELP-TYMIP-SYFIQLD--KMPLTSNGKIDRKQLPE 509 (514)
T ss_dssp HSC-GGGSC-SEEEECS--SCCBCTTSSBCGGGSCC
T ss_pred hCC-cccCc-eEEEEeC--CCCCCCCcChhHHhcCC
Confidence 776 45554 4566655 89999999999999886
|
| >d3cw9a1 e.23.1.1 (A:1-503) 4-chlorobenzoyl CoA ligase {Alcaligenes sp. [TaxId: 512]} | Back information, alignment and structure |
|---|
class: Multi-domain proteins (alpha and beta) fold: Acetyl-CoA synthetase-like superfamily: Acetyl-CoA synthetase-like family: Acetyl-CoA synthetase-like domain: 4-chlorobenzoyl CoA ligase species: Alcaligenes sp. [TaxId: 512]
Probab=100.00 E-value=6.7e-33 Score=256.16 Aligned_cols=293 Identities=16% Similarity=0.110 Sum_probs=193.1
Q ss_pred CeEEEEeccCCCCCceEEEEeHHHHHHHHHHHHHHhcC--CCCCceEEecCCcCChhhhHHHHhhhhcCceeeeeCCccc
Q psy14342 1 MLAYLDFSVSTTGMLAGIKMSHAAVTSLCRSMKLACEL--YPSRHIALCLDPYCGLGFALWVLSSVYSGHHSILIPPSEV 78 (316)
Q Consensus 1 ~~a~i~~TSGTTG~PK~V~~t~~~l~~~~~~~~~~~~~--~~~d~~l~~~p~~h~~g~~~~~~~~l~~G~~~v~~~~~~~ 78 (316)
|+++|+|||||||.||+|.++|+++..........+.. ...++.+.++|+.|..+.....+.+...++.+++..+.
T Consensus 154 ~~a~i~~TSGTTG~pK~v~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~-- 231 (503)
T d3cw9a1 154 QPAFIFYTSGTTGLPKAAIIPQRAAESRVLFMSTQVGLRHGRHNVVLGLMPLYHVVGFFAVLVAALALDGTYVVVEEF-- 231 (503)
T ss_dssp SEEEEEEECCSSSSCEEEEEEGGGHHHHHHHHHHTSCCCSSTTCEEEECSCTTSHHHHHTTHHHHHHTTCEEEECSSC--
T ss_pred hhhhhcccccccccccccccccchhhhhhhhccccccccccccccccccCcccccccccccccccccccccccccccc--
Confidence 58999999999999999999999998888776665543 45588899999999888877677777878877776543
Q ss_pred ccChHHHHHHHhccceeeEEecccchhhHHhhHHhhh-h----hcccccccc-----------------cccccccchhc
Q psy14342 79 EVNPALWLSAVSQYRVRDTFCSYGMLAGIKMSHAAVT-S----LCRSMKLAC-----------------ELYPSRHIALC 136 (316)
Q Consensus 79 ~~~~~~~~~~~~~~~~t~~~~~~~~~~~l~~~~~~~~-~----~~~~~~ls~-----------------e~~~~yG~te~ 136 (316)
+|..++..+..++++..+.++.....+........ . ..+.+..++ .+.+.||.+|+
T Consensus 232 --~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Lr~i~~gG~~~~~~~~~~~~~~~~~~~~~~yg~~e~ 309 (503)
T d3cw9a1 232 --RPVDALQLVQQEQVTSLFATPTHLDALAAAAAHAGSSLKLDSLRHVTFAGATMPDAVLETVHQHLPGEKVNIYGTTEA 309 (503)
T ss_dssp --CHHHHHHHHHHHTCCEEEECHHHHHHHHHHHHHTCTTCCCTTCCEEEECSSCCCHHHHHHHHHHCCSEEEEEEEETTT
T ss_pred --ChHHhhhhhhhceeeccccccccccccccccccccccccccceEEEEecccccccccccccccccccccccccccccc
Confidence 68889999999999998888887664443333211 0 111122222 17778999888
Q ss_pred cCCCCCCCceEEEEeeeccC-cccc--cCCCce-EEecCc---eEEecC----CCcccCCCcCC----------CCceee
Q psy14342 137 LDPYCGLGFALWVLSSVYSG-HHSI--LIPPSE-VEVNPA---LWLSAV----SQYRVRDTFCS----------CNGALY 195 (316)
Q Consensus 137 ~~~~~~~~~~~~~~~~~~~g-~~~~--~~~g~~-~i~d~~---l~v~~~----~gY~~~~~~~~----------~d~g~~ 195 (316)
+..................+ +... ...... ....++ +.+.+. .+|++++..+. +|.|++
T Consensus 310 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~g~~~~~~~~~~~~~~~~~~~~t~~~~~~g~~~TgD~g~~ 389 (503)
T d3cw9a1 310 MNSLYMRQPKTGTEMAPGFFSEVRIVRIGGGVDEIVANGEEGELIVAASDSAFVGYLNQPQATAEKLQDGWYRTSDVAVW 389 (503)
T ss_dssp EEEEEEESCSSSSEEBCCTTCCEEEECTTSCTTCBCCTTCCEEEEEECCTTSCCCBTTCHHHHHHHEETTEEEEEEEEEE
T ss_pred ceeeeeccccccccccccccccceeeeeecccCcccCCCccccccccccccccccccCChhhhHHHhcCCceeccccccc
Confidence 64322111100000000000 0000 011111 111111 334433 67777765442 266666
Q ss_pred ec-Cc---CCcccceeEECCcccChHhHHHHHHHhccccceeEEEeeC-----CcEEEEEEecCCch-hhcchHHHHHHH
Q psy14342 196 QG-AE---RLALDETIMLRGMRYHPIDIENSVMRAHKKIAECAVFTWT-----NLLVVVVELDGNES-EALDLVPLVTNA 265 (316)
Q Consensus 196 ~~-g~---~GR~dd~i~~~G~~v~p~eIE~~l~~~~p~v~~~~v~~~~-----~~~~~~v~~~~~~~-~~~~l~~~~~~~ 265 (316)
++ |. +||.||+||++|++|+|.|||++|.+ ||+|.+|+|++.+ +.+++++++..... +.+++.+.+++.
T Consensus 390 ~~dG~l~~~GR~~d~ik~~G~~v~~~~IE~~l~~-~p~V~~~~v~~~~~~~~g~~~~a~v~~~~~~~~~~~~l~~~~~~~ 468 (503)
T d3cw9a1 390 TPEGTVRILGRVDDMIISGGENIHPSEIERVLGT-APGVTEVVVIGLADQRWGQSVTACVVPRLGETLSADALDTFCRSS 468 (503)
T ss_dssp CTTSCEEEEEESSCCEEETTEEECHHHHHHHHTT-STTEEEEEEEEEEETTTEEEEEEEEEECTTCCCCHHHHHHHHHHS
T ss_pred ccCCeEEeCCCcCCeEEECCEEECHHHHHHHHHh-CCCccEEEEEEEECCCCCeEEEEEEEeCCCCCCCHHHHHHHHHhc
Confidence 53 43 99999999999999999999999999 9999999999873 35777777665332 335566655432
Q ss_pred -HHHhcCeeecEEEEEcCCCcccCCCchhhHHHHHHHH
Q psy14342 266 -VLEEHHLIVGVAVVVDPGVVPINSRGEKQRMHLRDGF 302 (316)
Q Consensus 266 -l~~~~~~~~~~~~~~~~~~lP~t~~gKi~r~~l~~~~ 302 (316)
+. .+..| ..+.+++ +||+|++|||+|++|++++
T Consensus 469 ~l~-~~~~P-~~i~~v~--~~P~t~~GKi~R~~L~~~~ 502 (503)
T d3cw9a1 469 ELA-DFKRP-KRYFILD--QLPKNALNKVLRRQLVQQV 502 (503)
T ss_dssp SSC-GGGSC-SEEEECS--CCCBCTTSCBCHHHHHHHH
T ss_pred CCC-CCCCc-cEEEEEC--CCCcCCCcCccHHHHHHhc
Confidence 33 34444 3555554 8999999999999999876
|
| >d1lcia_ e.23.1.1 (A:) Luciferase {Firefly (Photinus pyralis) [TaxId: 7054]} | Back information, alignment and structure |
|---|
class: Multi-domain proteins (alpha and beta) fold: Acetyl-CoA synthetase-like superfamily: Acetyl-CoA synthetase-like family: Acetyl-CoA synthetase-like domain: Luciferase species: Firefly (Photinus pyralis) [TaxId: 7054]
Probab=90.73 E-value=0.7 Score=40.13 Aligned_cols=96 Identities=17% Similarity=0.172 Sum_probs=69.8
Q ss_pred EEEEeccCCCCCceEEEEeHHHHHHHHHHHHHH---hcCCCCCceEEecCCcCChhhhHHHHhhhhcCceeeeeCCcccc
Q psy14342 3 AYLDFSVSTTGMLAGIKMSHAAVTSLCRSMKLA---CELYPSRHIALCLDPYCGLGFALWVLSSVYSGHHSILIPPSEVE 79 (316)
Q Consensus 3 a~i~~TSGTTG~PK~V~~t~~~l~~~~~~~~~~---~~~~~~d~~l~~~p~~h~~g~~~~~~~~l~~G~~~v~~~~~~~~ 79 (316)
+.+.++++.++ ..+|++.+...+..+... .++.++|++..+++-.. .++..++..+..|+..+...+..
T Consensus 35 ~~~a~~d~~~~----~~lTy~el~~~~~~lA~~L~~~Gi~~Gd~Vai~~~ns~--e~~v~~lA~~~~G~i~vpl~~~~-- 106 (541)
T d1lcia_ 35 GTIAFTDAHIE----VNITYAEYFEMSVRLAEAMKRYGLNTNHRIVVCSENSL--QFFMPVLGALFIGVAVAPANDIY-- 106 (541)
T ss_dssp TCEEEEETTTC----CEEEHHHHHHHHHHHHHHHHHHTCCTTCEEEEECSSCS--STHHHHHHHHHHTCEEEECCTTC--
T ss_pred CeEEEEeCCCC----eEeeHHHHHHHHHHHHHHHHHcCcCCCCEEEEEeCCCH--HHHHHHHHHHHhCeEEEecCCCC--
Confidence 34556666555 358999888776655544 57899999999877543 55566789999999998877653
Q ss_pred cChHHHHHHHhccceeeEEecccchhhH
Q psy14342 80 VNPALWLSAVSQYRVRDTFCSYGMLAGI 107 (316)
Q Consensus 80 ~~~~~~~~~~~~~~~t~~~~~~~~~~~l 107 (316)
.+..+...++..++..+++....+..+
T Consensus 107 -~~~~l~~~l~~~~~~~vi~~~~~~~~~ 133 (541)
T d1lcia_ 107 -NERELLNSMNISQPTVVFVSKKGLQKI 133 (541)
T ss_dssp -CHHHHHHHHHHHCCSEEEECGGGHHHH
T ss_pred -CHHHHHHHHHhccceEEeeeccccccc
Confidence 567788899999999888776655433
|
| >d1pg4a_ e.23.1.1 (A:) Acetyl-CoA synthetase {Salmonella enterica [TaxId: 28901]} | Back information, alignment and structure |
|---|
class: Multi-domain proteins (alpha and beta) fold: Acetyl-CoA synthetase-like superfamily: Acetyl-CoA synthetase-like family: Acetyl-CoA synthetase-like domain: Acetyl-CoA synthetase species: Salmonella enterica [TaxId: 28901]
Probab=88.59 E-value=1.3 Score=39.74 Aligned_cols=92 Identities=10% Similarity=-0.021 Sum_probs=67.4
Q ss_pred EEEeccCCCCCceEEEEeHHHHHHHHHHHHH---HhcCCCCCceEEecCCcCChhhhHHHHhhhhcCceeeeeCCccccc
Q psy14342 4 YLDFSVSTTGMLAGIKMSHAAVTSLCRSMKL---ACELYPSRHIALCLDPYCGLGFALWVLSSVYSGHHSILIPPSEVEV 80 (316)
Q Consensus 4 ~i~~TSGTTG~PK~V~~t~~~l~~~~~~~~~---~~~~~~~d~~l~~~p~~h~~g~~~~~~~~l~~G~~~v~~~~~~~~~ 80 (316)
.|+|.+-.+|..+ .+|.+.|...+..++. ..++.+||++..++|-.. .++..++..+..|+..+.+.+..
T Consensus 90 Ali~~~~~~~~~~--~~TY~eL~~~v~~~A~~L~~~Gv~~Gd~V~i~~~n~~--e~iv~~lA~~~~Gav~v~l~~~~--- 162 (643)
T d1pg4a_ 90 AIIWEGDDTSQSK--HISYRELHRDVCRFANTLLDLGIKKGDVVAIYMPMVP--EAAVAMLACARIGAVHSVIFGGF--- 162 (643)
T ss_dssp EEEEECSSTTCEE--EEEHHHHHHHHHHHHHHHHHHTCCTTCEEEEECCSSH--HHHHHHHHHHHHTCEEEECCTTS---
T ss_pred EEEEEecCCCCce--EEeHHHHHHHHHHHHHHHHHcCCCCCCEEEEecccch--HHHHHHHHHHHhCeEEEecCCCC---
Confidence 3455555555544 6889888776655544 458899999999987644 55566889999999999887653
Q ss_pred ChHHHHHHHhccceeeEEeccc
Q psy14342 81 NPALWLSAVSQYRVRDTFCSYG 102 (316)
Q Consensus 81 ~~~~~~~~~~~~~~t~~~~~~~ 102 (316)
.+......+.+.++.++++...
T Consensus 163 ~~~~l~~~l~~~~~~~li~~~~ 184 (643)
T d1pg4a_ 163 SPEAVAGCIIDSSSRLVITADE 184 (643)
T ss_dssp CHHHHHHHHHHHTCSEEEEESE
T ss_pred CHHHHHHHHHhcCCCEEEEcch
Confidence 5778888999999887776544
|
| >d3cw9a1 e.23.1.1 (A:1-503) 4-chlorobenzoyl CoA ligase {Alcaligenes sp. [TaxId: 512]} | Back information, alignment and structure |
|---|
class: Multi-domain proteins (alpha and beta) fold: Acetyl-CoA synthetase-like superfamily: Acetyl-CoA synthetase-like family: Acetyl-CoA synthetase-like domain: 4-chlorobenzoyl CoA ligase species: Alcaligenes sp. [TaxId: 512]
Probab=82.97 E-value=3.3 Score=34.88 Aligned_cols=79 Identities=14% Similarity=0.206 Sum_probs=60.4
Q ss_pred EEeHHHHHHHHHHHHHH---hcCCCCCceEEecCCcCChhhhHHHHhhhhcCceeeeeCCcccccChHHHHHHHhcccee
Q psy14342 19 KMSHAAVTSLCRSMKLA---CELYPSRHIALCLDPYCGLGFALWVLSSVYSGHHSILIPPSEVEVNPALWLSAVSQYRVR 95 (316)
Q Consensus 19 ~~t~~~l~~~~~~~~~~---~~~~~~d~~l~~~p~~h~~g~~~~~~~~l~~G~~~v~~~~~~~~~~~~~~~~~~~~~~~t 95 (316)
.+|.+.+...+..+... .++.++|++...++- ...++..+|..+..|+..+..++.. .+..+..++++.++.
T Consensus 29 ~~Ty~el~~~~~~~a~~L~~~Gv~~gd~V~i~~~n--~~~~~~~~lA~~~~G~v~vpi~~~~---~~~~i~~~l~~~~~~ 103 (503)
T d3cw9a1 29 RLTHAELRARVEAVAARLHADGLRPQQRVAVVAPN--SADVVIAILALHRLGAVPALLNPRL---KSAELAELIKRGEMT 103 (503)
T ss_dssp EEEHHHHHHHHHHHHHHHHHTTCCTTCEEEEECCS--CHHHHHHHHHHHHHTCEEEEECTTS---CHHHHHHHHHHTTCS
T ss_pred EEeHHHHHHHHHHHHHHHHHcCcCCCCEEEEEeCC--CHHHHHHHHHHHHhCcEEEEeCCCC---CHHHHHHHHHhcCCc
Confidence 58998887666555443 478899998888764 4577777899999999999987753 567788899999998
Q ss_pred eEEeccc
Q psy14342 96 DTFCSYG 102 (316)
Q Consensus 96 ~~~~~~~ 102 (316)
.++....
T Consensus 104 ~~i~~~~ 110 (503)
T d3cw9a1 104 AAVIAVG 110 (503)
T ss_dssp EEEESSC
T ss_pred EEEeecc
Confidence 7765544
|
| >d1v25a_ e.23.1.1 (A:) Long chain fatty acid-CoA ligase TT0168 {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Multi-domain proteins (alpha and beta) fold: Acetyl-CoA synthetase-like superfamily: Acetyl-CoA synthetase-like family: Acetyl-CoA synthetase-like domain: Long chain fatty acid-CoA ligase TT0168 species: Thermus thermophilus [TaxId: 274]
Probab=81.85 E-value=8.5 Score=32.81 Aligned_cols=82 Identities=10% Similarity=-0.068 Sum_probs=62.3
Q ss_pred EEeHHHHHHHHHHHHHH---hcCCCCCceEEecCCcCChhhhHHHHhhhhcCceeeeeCCcccccChHHHHHHHhcccee
Q psy14342 19 KMSHAAVTSLCRSMKLA---CELYPSRHIALCLDPYCGLGFALWVLSSVYSGHHSILIPPSEVEVNPALWLSAVSQYRVR 95 (316)
Q Consensus 19 ~~t~~~l~~~~~~~~~~---~~~~~~d~~l~~~p~~h~~g~~~~~~~~l~~G~~~v~~~~~~~~~~~~~~~~~~~~~~~t 95 (316)
.+|...+...+..++.. .++.++|++...++-. ..++..++..+..|+..+..++.- .+..+...++..++.
T Consensus 40 ~~Ty~el~~~~~~~A~~L~~~Gv~~gd~V~i~~~n~--~e~~~~~lA~~~~G~v~vpl~~~~---~~~~l~~~l~~~~~~ 114 (534)
T d1v25a_ 40 RTTYAEVYQRARRLMGGLRALGVGVGDRVATLGFNH--FRHLEAYFAVPGMGAVLHTANPRL---SPKEIAYILNHAEDK 114 (534)
T ss_dssp EEEHHHHHHHHHHHHHHHHHTTCCTTCEEEEECCSS--HHHHHHHHHHHHTTCEEEECCTTS---CHHHHHHHHHHHTCS
T ss_pred EEcHHHHHHHHHHHHHHHHHCCcCCCCEEEEEeCCC--HHHHHHHHHHHHhCcEEEecCCCC---CHHHHHHHHHhhccc
Confidence 58999888776655554 4788999998888754 466777899999999999887652 567788888888888
Q ss_pred eEEecccchh
Q psy14342 96 DTFCSYGMLA 105 (316)
Q Consensus 96 ~~~~~~~~~~ 105 (316)
..+.......
T Consensus 115 ~i~~~~~~~~ 124 (534)
T d1v25a_ 115 VLLFDPNLLP 124 (534)
T ss_dssp EEEECGGGHH
T ss_pred cccccchhhh
Confidence 7776655543
|
| >d1ry2a_ e.23.1.1 (A:) Acetyl-CoA synthetase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Multi-domain proteins (alpha and beta) fold: Acetyl-CoA synthetase-like superfamily: Acetyl-CoA synthetase-like family: Acetyl-CoA synthetase-like domain: Acetyl-CoA synthetase species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=81.01 E-value=5.3 Score=35.36 Aligned_cols=92 Identities=5% Similarity=-0.040 Sum_probs=66.2
Q ss_pred EEeccCCCCCceEEEEeHHHHHHHHHHHHH----HhcCCCCCceEEecCCcCChhhhHHHHhhhhcCceeeeeCCccccc
Q psy14342 5 LDFSVSTTGMLAGIKMSHAAVTSLCRSMKL----ACELYPSRHIALCLDPYCGLGFALWVLSSVYSGHHSILIPPSEVEV 80 (316)
Q Consensus 5 i~~TSGTTG~PK~V~~t~~~l~~~~~~~~~----~~~~~~~d~~l~~~p~~h~~g~~~~~~~~l~~G~~~v~~~~~~~~~ 80 (316)
|+|-+..+|.- ..+|.+.|...+..++. .+++.+||++..++|- ...++..++..+..|+..+...+..
T Consensus 78 li~~~~~~g~~--~~~Ty~eL~~~v~~~A~~L~~~~Gv~~Gd~V~i~~~n--~~e~~~~~lA~~~~Gav~vpi~~~~--- 150 (640)
T d1ry2a_ 78 IIFEGDEPGQG--YSITYKELLEEVCQVAQVLTYSMGVRKGDTVAVYMPM--VPEAIITLLAISRIGAIHSVVFAGF--- 150 (640)
T ss_dssp EEEECSSTTCC--EEEEHHHHHHHHHHHHHHHHHTSCCCTTCEEEECCCS--SHHHHHHHHHHHHTTCEEEECCTTS---
T ss_pred EEEEecCCCCe--eEEeHHHHHHHHHHHHHHHHHhcCCCCCCEEEEEeCC--CHHHHHHHHHhccCceEeecCCCCC---
Confidence 44555555543 37899988776655443 3578899999998774 4466666889999999999887653
Q ss_pred ChHHHHHHHhccceeeEEecccc
Q psy14342 81 NPALWLSAVSQYRVRDTFCSYGM 103 (316)
Q Consensus 81 ~~~~~~~~~~~~~~t~~~~~~~~ 103 (316)
.+..+...+++.++.++++....
T Consensus 151 ~~~~l~~~~~~~~~~~~~~~~~~ 173 (640)
T d1ry2a_ 151 SSNSLRDRINDGDSKVVITTDES 173 (640)
T ss_dssp CHHHHHHHHHHHTCSEEEEESBC
T ss_pred CHHHHHHHHHhhhccccccchhh
Confidence 46778888888888877765543
|