Psyllid ID: psy14345

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-
Protein Sequence
MNYNLLKQNNKKFLLLASLEDGATVKAGQQLFKIKPTATSVVDWWSSPEEGSSAQSRGYSSSSSSSLCCCSSPSPSLCYSSAIEAATVKLPPADPTKEISGTRSEQRVKMNRMRQRIAQRLKEAQNVNAMLTTFNEIDMSAIIEFRKAHLEAFQKKYGLKLGFMSPFIKASAYALQDQPVVNAVIEGTDIVYRDYVDISVGMGRNESNLPRWCFNGLLSGVLVLTEHLNGKYCVSSRPSYERHTTGWACYDRLNWNLAIEDSDGGTFTISNGGVFGSLLGTPIINPPQSAILGMHGTFERPVAIKGQVVVKPMMYVALTYDHRLIDGREAVLFLQKEAHLEAFQKKYGLKLGFMSPFIKASAYALQDQPVVNAVIEGTDIVYRDYVDISVAVATPKGLVVPVIRNVEAMNFADIELTIAALGEKARTGKYT
Secondary Structure (PSIPRED)
cccHHHcccccEEEEEEEcccccEEEcccEEEEEcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccEEEcccHHHHHHHHHHHHHHHcccccccccccccHHHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHccccccEEEcccEEEcccEEEEEEEEcccccccccccccEEEEEEccccccccccccccHHHHHHHHHHHHHHHcccccccccccccccEEEEccccccccccccccccccHHHccccccccccEEEccEEEEccccEEEcccccccccccccHHHHHHHHHHHHHHHHHccccccccHHHHHHHHHHHHccccccEEEcccEEEcccEEEEEEEEccccEEEccccccccccHHHHHHHHHHHHHHHHccccc
Secondary Structure Prediction (SSPRO)
cccccccccccccHHHHEHcccccEccccEEEEEccccccccccccccccccccccccHHHHcccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHccccHcHHHHHHHHHHHHHHccccEEEEEccccEEEEcEEEEEEEEEccccccccccccccEEEEEccHHcccHHHHHHHHHHHHHHHHHHHHHHHHcccEcHHHccccEEEEEccccccccccccccccccHHHHHHHHcccccEEEccEEEEEccEEEEEEcccEEEccHHHHHHHHHHHHHcccHHHHHcHHcHHHHHHHHHHHHHHccccEEEEEccccEEEcccccEEEcEEEccEEEccEEccHHHccHHHHHHHHHHHHHHHHccccc
Coil and Loop (DISEMBL)
MNYNLLKQNNKKFLLLASLEDGATVKAGQQlfkikptatsvvdwwsspeegssaqsrgyssssssslcccsspspslcyssaieaatvklppadptkeisgtrsEQRVKMNRMRQRIAQRLKEAQNVNAMLTTFNEIDMSAIIEFRKAHLEAFQKKyglklgfmsPFIKASayalqdqpvvnaviegtdivYRDYVDIsvgmgrnesnlprwcfnGLLSGVLVLTEhlngkycvssrpsyerhttgwacydrlnwnlaiedsdggtftisnggvfgsllgtpiinppqsailgmhgtferpvaikgqvvVKPMMYVALTYDHRLIDGREAVLFLQKEAHLEAFQKKYglklgfmsPFIKASayalqdqpvvnaviegtdivyrDYVDISVAvatpkglvvpvirnveamnfaDIELTIAALGEkartgkyt
Flexible Loop (DISEMBL)
MNYNLLKQNNKKFLLLASLEDGATVKAGQQLFKIKPTATSVVDWWSSPEEGSSAQSRGYSSSSSSSLCCCSSPSPSLCYSSAIEAatvklppadptkeisgtrseqrvkMNRMRQRIAQRLKEAQNVNAMLTTFNEIDMSAIIEFRKAHLEAFQKKYGLKLGFMSPFIKASAYALQDQPVVNAVIEGTDIVYRDYVDISVGMGRNESNLPRWCFNGLLSGVLVLTEHLNGKycvssrpsyerhttgWACYDRLNWNLAIEDSDGGTFTISNGGVFGSLLGTPIINPPQSAILGMHGTFERPVAIKGQVVVKPMMYVALTYDHRLIDGREAVLFLQKEAHLEAFQKKYGLKLGFMSPFIKASAYALQDQPVVNAVIEGTDIVYRDYVDISVAVATPKGLVVPVIRNVEAMNFADIELTIAalgekartgkyt
Low Complexity Region (SEG)
MNYnllkqnnkkflllASLEDGATVKAGQQLFKIKPTATSVVDWWSSPEEGSSAQSRGyssssssslcccsspspslcyssAIEAATVKLPPADPTKEISGTRSEQRVKMNRMRQRIAQRLKEAQNVNAMLTTFNEIDMSAIIEFRKAHLEAFQKKYGLKLGFMSPFIKASAYALQDQPVVNAVIEGTDIVYRDYVDISVGMGRNESNLPRWCFNGLLSGVLVLTEHLNGKYCVSSRPSYERHTTGWACYDRLNWNLAIEDSDGGTFTISNGGVFGSLLGTPIINPPQSAILGMHGTFERPVAIKGQVVVKPMMYVALTYDHRLIDGREAVLFLQKEAHLEAFQKKYGLKLGFMSPFIKASAYALQDQPVVNAVIEGTDIVYRDYVDISVAVATPKGLVVPVIRNVEAMNFADIELTIAALGEKARTGKYT
Disordered region (IsUnstruct)
**********KKFLLLASLEDGATVKAGQQLFKIKPTATSVVDWW********************************CY**********************************************NVNAMLTTFNEIDMSAIIEFRKAHLEAFQKKYGLKLGFMSPFIKASAYALQDQPVVNAVIEGTDIVYRDYVDISVGMGRNESNLPRWCFNGLLSGVLVLTEHLNGKYCVSSRPSYERHTTGWACYDRLNWNLAIEDSDGGTFTISNGGVFGSLLGTPIINPPQSAILGMHGTFERPVAIKGQVVVKPMMYVALTYDHRLIDGREAVLFLQKEAHLEAFQKKYGLKLGFMSPFIKASAYALQDQPVVNAVIEGTDIVYRDYVDISVAVATPKGLVVPVIRNVEAMNFADIELTIAALG*********
Disordered Region (DISOPRED)
********NNKKFLLLASLEDGATVKAGQQLF********************************************************************************MRQRIAQRLKEAQNVNAMLTTFNEIDMSAIIEFRKAHLEAFQKKYGLKLGFMSPFIKASAYALQDQPVVNAVIEGTDIVYRDYVDISVGMGRNESNLPRWCFNGLLSGVLVLTEHLNGKYCVSSRPSYERHTTGWACYDRLNWNLAIEDSDGGTFTISNGGVFGSLLGTPIINPPQSAILGMHGTFERPVAIKGQVVVKPMMYVALTYDHRLIDGREAVLFLQKEAHLEAFQKKYGLKLGFMSPFIKASAYALQDQPVVNAVIEGTDIVYRDYVDISVAVATPKGLVVPVIRNVEAMNFADIELTIAALGEKART****
Disordered Region (DISEMBL)
MNYNLLKQNNKKFLLLASLEDGATVKAGQQLFKIKPTATSVVDWWS*****************************SLCYSSAIEAATVKLPPADPTKEISGTRSEQRVKMNRMRQRIAQRLKEAQNVNAMLTTFNEIDMSAIIEFRKAHLEAFQKKYGLKLGFMSPFIKASAYALQDQPVVNAVIEGTDIVYRDYVDISVGMGRNESNLPRWCFNGLLSGVLVLTEHLNGKYCVS********TTGWACYDRLNWNLAIEDSDGGTFTISNGGVFGSLLGTPIINPPQSAILGMHGTFERPVAIKGQVVVKPMMYVALTYDHRLIDGREAVLFLQKEAHLEAFQKKYGLKLGFMSPFIKASAYALQDQPVVNAVIEGTDIVYRDYVDISVAVATPKGLVVPVIRNVEAMNFADIELTIAALGEKARTGKYT
Disordered Region (DISPRO)
*NYNLLKQNNKKFLLLASLEDGATVKAGQQLFKIKP***********************************************************************VKMNRMRQRIAQRLKEAQNVNAMLTTFNEIDMSAIIEFRKAHLEAFQKKYGLKLGFMSPFIKASAYALQDQPVVNAVIEGTDIVYRDYVDISVGMGRNESNLPRWCFNGLLSGVLVLTEHLNGKYCVSSRPSYERHTTGWACYDRLNWNLAIEDSDGGTFTISNGGVFGSLLGTPIINPPQSAILGMHGTFERPVAIKGQVVVKPMMYVALTYDHRLIDGREAVLFLQKEAHLEAFQKKYGLKLGFMSPFIKASAYALQDQPVVNAVIEGTDIVYRDYVDISVAVATPKGLVVPVIRNVEAMNFADIELTIAALGEKAR*****
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
SSSSSSSSSSSSSSSSSSSSSSSSSSSoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MNYNLLKQNNKKFLLLASLEDGATVKAGQQLFKIKPTATSVVDWWSSPEEGSSAQSRGYSSSSSSSLCCCSSPSPSLCYSSAIEAATVKLPPADPTKEISGTRSEQRVKMNRMRQRIAQRLKEAQNVNAMLTTFNEIDMSAIIEFRKAHLEAFQKKYGLKLGFMSPFIKASAYALQDQPVVNAVIEGTDIVYRDYVDISVGMGRNESNLPRWCFNGLLSGVLVLTEHLNGKYCVSSRPSYERHTTGWACYDRLNWNLAIEDSDGGTFTISNGGVFGSLLGTPIINPPQSAILGMHGTFERPVAIKGQVVVKPMMYVALTYDHRLIDGREAVLFLQKEAHLEAFQKKYGLKLGFMSPFIKASAYALQDQPVVNAVIEGTDIVYRDYVDISVAVATPKGLVVPVIRNVEAMNFADIELTIAALGEKARTGKYT
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	431	2.2.26 [Sep-21-2011]
P36957	453	Dihydrolipoyllysine-resid	yes	N/A	0.538	0.512	0.650	2e-79
Q01205	454	Dihydrolipoyllysine-resid	yes	N/A	0.531	0.504	0.633	1e-77
Q9N0F1	455	Dihydrolipoyllysine-resid	yes	N/A	0.531	0.503	0.625	3e-77
Q90512	409	Dihydrolipoyllysine-resid	N/A	N/A	0.682	0.718	0.512	5e-77
Q9D2G2	454	Dihydrolipoyllysine-resid	yes	N/A	0.531	0.504	0.629	6e-77
P11179	455	Dihydrolipoyllysine-resid	yes	N/A	0.570	0.540	0.613	9e-77
Q869Y7	439	Dihydrolipoyllysine-resid	yes	N/A	0.494	0.485	0.569	1e-66
P19262	463	Dihydrolipoyllysine-resid	yes	N/A	0.684	0.637	0.452	5e-65
Q9FLQ4	464	Dihydrolipoyllysine-resid	yes	N/A	0.515	0.478	0.504	2e-64
Q8H107	464	Dihydrolipoyllysine-resid	no	N/A	0.517	0.480	0.502	1e-63

>sp|P36957|ODO2_HUMAN Dihydrolipoyllysine-residue succinyltransferase component of 2-oxoglutarate dehydrogenase complex, mitochondrial OS=Homo sapiens GN=DLST PE=1 SV=4

 Score =  296 bits (758), Expect = 2e-79,   Method: Compositional matrix adjust.
 Identities = 164/252 (65%), Positives = 181/252 (71%), Gaps = 20/252 (7%)

Query: 87  TVKLPPADPTKEISGTRSEQRVKMNRMRQRIAQRLKEAQNVNAMLTTFNEIDMSAIIEFR 146
           TV  P A+P     G RSE R KMNRMRQRIAQRLKEAQN  AMLTTFNEIDMS I E R
Sbjct: 205 TVAPPLAEPGAG-KGLRSEHREKMNRMRQRIAQRLKEAQNTCAMLTTFNEIDMSNIQEMR 263

Query: 147 KAHLEAFQKKYGLKLGFMSPFIKASAYALQDQPVVNAVIEGT--DIVYRDYVDISVGMGR 204
             H EAF KK+ LKLGFMS F+KASA+ALQ+QPVVNAVI+ T  ++VYRDY+DISV +  
Sbjct: 264 ARHKEAFLKKHNLKLGFMSAFVKASAFALQEQPVVNAVIDDTTKEVVYRDYIDISVAVA- 322

Query: 205 NESNLPRWCFNGLLSGVLVLTEHLNGKYCVSSRPSYERHTTGWACYDRLNWNLAIEDSDG 264
                PR    GL+  V+   E +N           ER  T      R N  LAIED DG
Sbjct: 323 ----TPR----GLVVPVIRNVEAMNFA-------DIERTITELGEKARKN-ELAIEDMDG 366

Query: 265 GTFTISNGGVFGSLLGTPIINPPQSAILGMHGTFERPVAIKGQVVVKPMMYVALTYDHRL 324
           GTFTISNGGVFGSL GTPIINPPQSAILGMHG F+RPVAI G+V V+PMMYVALTYDHRL
Sbjct: 367 GTFTISNGGVFGSLFGTPIINPPQSAILGMHGIFDRPVAIGGKVEVRPMMYVALTYDHRL 426

Query: 325 IDGREAVLFLQK 336
           IDGREAV FL+K
Sbjct: 427 IDGREAVTFLRK 438

The 2-oxoglutarate dehydrogenase complex catalyzes the overall conversion of 2-oxoglutarate to succinyl-CoA and CO(2). It contains multiple copies of 3 enzymatic components: 2-oxoglutarate dehydrogenase (E1), dihydrolipoamide succinyltransferase (E2) and lipoamide dehydrogenase (E3).
Homo sapiens (taxid: 9606)
EC: 2EC: .EC: 3EC: .EC: 1EC: .EC: 6EC: 1

>sp|Q01205|ODO2_RAT Dihydrolipoyllysine-residue succinyltransferase component of 2-oxoglutarate dehydrogenase complex, mitochondrial OS=Rattus norvegicus GN=Dlst PE=1 SV=2

 Score =  290 bits (743), Expect = 1e-77,   Method: Compositional matrix adjust.
 Identities = 157/248 (63%), Positives = 176/248 (70%), Gaps = 19/248 (7%)

Query: 91  PPADPTKEISGTRSEQRVKMNRMRQRIAQRLKEAQNVNAMLTTFNEIDMSAIIEFRKAHL 150
           PP        G RSE R KMNRMRQRIAQRLKEAQN  AMLTTFNE+DMS I E R  H 
Sbjct: 209 PPLAEAGAAKGLRSEHREKMNRMRQRIAQRLKEAQNTCAMLTTFNEVDMSNIQEMRARHK 268

Query: 151 EAFQKKYGLKLGFMSPFIKASAYALQDQPVVNAVIEGT--DIVYRDYVDISVGMGRNESN 208
           +AF KK+ LKLGFMS F+KASA+ALQ+QPVVNAVI+    ++VYRDY+DISV +      
Sbjct: 269 DAFLKKHNLKLGFMSAFVKASAFALQEQPVVNAVIDDATKEVVYRDYIDISVAVA----- 323

Query: 209 LPRWCFNGLLSGVLVLTEHLNGKYCVSSRPSYERHTTGWACYDRLNWNLAIEDSDGGTFT 268
            PR    GL+  V+   E +N  Y        ER         R N  LAIED DGGTFT
Sbjct: 324 TPR----GLVVPVIRNVETMN--YA-----DIERTINELGEKARKN-ELAIEDMDGGTFT 371

Query: 269 ISNGGVFGSLLGTPIINPPQSAILGMHGTFERPVAIKGQVVVKPMMYVALTYDHRLIDGR 328
           ISNGGVFGSL GTPIINPPQSAILGMHG F+RPVA+ G+V V+PMMYVALTYDHRLIDGR
Sbjct: 372 ISNGGVFGSLFGTPIINPPQSAILGMHGIFDRPVAVGGKVEVRPMMYVALTYDHRLIDGR 431

Query: 329 EAVLFLQK 336
           EAV FL+K
Sbjct: 432 EAVTFLRK 439

The 2-oxoglutarate dehydrogenase complex catalyzes the overall conversion of 2-oxoglutarate to succinyl-CoA and CO(2). It contains multiple copies of 3 enzymatic components: 2-oxoglutarate dehydrogenase (E1), dihydrolipoamide succinyltransferase (E2) and lipoamide dehydrogenase (E3).

Rattus norvegicus (taxid: 10116)

EC: 2

EC: .

EC: 3

EC: .

EC: 1

EC: .

EC: 6

EC: 1

>sp|Q9N0F1|ODO2_PIG Dihydrolipoyllysine-residue succinyltransferase component of 2-oxoglutarate dehydrogenase complex, mitochondrial OS=Sus scrofa GN=DLST PE=1 SV=1

 Score =  289 bits (739), Expect = 3e-77,   Method: Compositional matrix adjust.
 Identities = 155/248 (62%), Positives = 177/248 (71%), Gaps = 19/248 (7%)

Query: 91  PPADPTKEISGTRSEQRVKMNRMRQRIAQRLKEAQNVNAMLTTFNEIDMSAIIEFRKAHL 150
           PP      + G R+E R KMNRMRQRIAQRLKEAQN  AMLTTFNEIDMS I + R  H 
Sbjct: 210 PPVAEPGAVKGLRAEHREKMNRMRQRIAQRLKEAQNTCAMLTTFNEIDMSNIQDMRARHK 269

Query: 151 EAFQKKYGLKLGFMSPFIKASAYALQDQPVVNAVIEGT--DIVYRDYVDISVGMGRNESN 208
           EAF KK+ LKLGFMS F+KASA+ALQ+QPVVNAVI+ T  ++VYRDY+DISV +      
Sbjct: 270 EAFLKKHNLKLGFMSAFVKASAFALQEQPVVNAVIDDTTKEVVYRDYIDISVAVA----- 324

Query: 209 LPRWCFNGLLSGVLVLTEHLNGKYCVSSRPSYERHTTGWACYDRLNWNLAIEDSDGGTFT 268
            PR    GL+  V+   E +N  Y        ER  +      R N  LAIED DGGTFT
Sbjct: 325 TPR----GLVVPVIRNVETMN--YA-----DIERTISELGEKARKN-ELAIEDMDGGTFT 372

Query: 269 ISNGGVFGSLLGTPIINPPQSAILGMHGTFERPVAIKGQVVVKPMMYVALTYDHRLIDGR 328
           ISNGGVFGSL GTPIINPPQSAILGMH   +RPVA+ G+V ++PMMYVALTYDHRLIDGR
Sbjct: 373 ISNGGVFGSLFGTPIINPPQSAILGMHAIVDRPVAVGGKVEIRPMMYVALTYDHRLIDGR 432

Query: 329 EAVLFLQK 336
           EAV FL+K
Sbjct: 433 EAVTFLRK 440

The 2-oxoglutarate dehydrogenase complex catalyzes the overall conversion of 2-oxoglutarate to succinyl-CoA and CO(2). It contains multiple copies of 3 enzymatic components: 2-oxoglutarate dehydrogenase (E1), dihydrolipoamide succinyltransferase (E2) and lipoamide dehydrogenase (E3).

Sus scrofa (taxid: 9823)

EC: 2

EC: .

EC: 3

EC: .

EC: 1

EC: .

EC: 6

EC: 1

>sp|Q90512|ODO2_TAKRU Dihydrolipoyllysine-residue succinyltransferase component of 2-oxoglutarate dehydrogenase complex, mitochondrial (Fragment) OS=Takifugu rubripes GN=dlst PE=3 SV=1

 Score =  288 bits (737), Expect = 5e-77,   Method: Compositional matrix adjust.
 Identities = 163/318 (51%), Positives = 198/318 (62%), Gaps = 24/318 (7%)

Query: 21  DGATVKAGQQLFKIKPTATSVVDWWSSPEEGSSAQSRGYSSSSSSSLCCCSSPSPSLCYS 80
           DG  V+ G  LFK++  A +     ++P   +   +              + PS     +
Sbjct: 99  DGGKVEGGTPLFKLRKGAAA----EAAPSSVTEPVTAAPPPPPPPVSAPTAMPSVPPVPT 154

Query: 81  SAIEAATVKLPPADPTKEISGTRSEQRVKMNRMRQRIAQRLKEAQNVNAMLTTFNEIDMS 140
            A++A  V  P   P     G R E RVKM+RMR RIAQRLKEAQN  AMLTTFNE+DMS
Sbjct: 155 QALQAKPVPAPTL-PEPSTLGGRGESRVKMSRMRLRIAQRLKEAQNTCAMLTTFNEVDMS 213

Query: 141 AIIEFRKAHLEAFQKKYGLKLGFMSPFIKASAYALQDQPVVNAVIEG--TDIVYRDYVDI 198
            I E R  H +AF KK+ +KLGFMS F+KA+A+AL DQP VNAVI+G   +IVYRDYVDI
Sbjct: 214 NIQEMRTLHKDAFLKKHSIKLGFMSAFVKAAAHALTDQPAVNAVIDGATNEIVYRDYVDI 273

Query: 199 SVGMGRNESNLPRWCFNGLLSGVLVLTEHLNGKYCVSSRPSYERHTTGWACYDRLNWNLA 258
           SV +       P+    GL+  V+   E +N           ER         R N  LA
Sbjct: 274 SVAVA-----TPK----GLVVPVIRNVETMNFA-------DIERTINALGEKAR-NNELA 316

Query: 259 IEDSDGGTFTISNGGVFGSLLGTPIINPPQSAILGMHGTFERPVAIKGQVVVKPMMYVAL 318
           +ED DGGTFTISNGGVFGSL GTPIINPPQSAILGMHG F+RPVA+ G+  ++PMMYVAL
Sbjct: 317 VEDMDGGTFTISNGGVFGSLFGTPIINPPQSAILGMHGIFQRPVAVDGKAEIRPMMYVAL 376

Query: 319 TYDHRLIDGREAVLFLQK 336
           TYDHRL+DGREAV FL+K
Sbjct: 377 TYDHRLVDGREAVTFLRK 394

The 2-oxoglutarate dehydrogenase complex catalyzes the overall conversion of 2-oxoglutarate to succinyl-CoA and CO(2). It contains multiple copies of three enzymatic components: 2-oxoglutarate dehydrogenase (E1), dihydrolipoamide succinyltransferase (E2) and lipoamide dehydrogenase (E3).

Takifugu rubripes (taxid: 31033)

EC: 2

EC: .

EC: 3

EC: .

EC: 1

EC: .

EC: 6

EC: 1

>sp|Q9D2G2|ODO2_MOUSE Dihydrolipoyllysine-residue succinyltransferase component of 2-oxoglutarate dehydrogenase complex, mitochondrial OS=Mus musculus GN=Dlst PE=1 SV=1

 Score =  288 bits (737), Expect = 6e-77,   Method: Compositional matrix adjust.
 Identities = 156/248 (62%), Positives = 175/248 (70%), Gaps = 19/248 (7%)

Query: 91  PPADPTKEISGTRSEQRVKMNRMRQRIAQRLKEAQNVNAMLTTFNEIDMSAIIEFRKAHL 150
           PP        G RSE R KMNRMRQRIAQRLKEAQN  AMLTTFNE+DMS I E R  H 
Sbjct: 209 PPLAEAGAAKGLRSEHREKMNRMRQRIAQRLKEAQNTCAMLTTFNEVDMSNIQEMRARHK 268

Query: 151 EAFQKKYGLKLGFMSPFIKASAYALQDQPVVNAVIEGT--DIVYRDYVDISVGMGRNESN 208
           +AF KK+ LKLGFMS F+KASA+ALQ+QPVVNAVI+    ++VYRDY+DISV +      
Sbjct: 269 DAFLKKHNLKLGFMSAFVKASAFALQEQPVVNAVIDDATKEVVYRDYIDISVAVA----- 323

Query: 209 LPRWCFNGLLSGVLVLTEHLNGKYCVSSRPSYERHTTGWACYDRLNWNLAIEDSDGGTFT 268
            PR    GL+  V+   E +N  Y        ER         R N  LAIED DGGTFT
Sbjct: 324 TPR----GLVVPVIRNVETMN--YA-----DIERTINELGEKARKN-ELAIEDMDGGTFT 371

Query: 269 ISNGGVFGSLLGTPIINPPQSAILGMHGTFERPVAIKGQVVVKPMMYVALTYDHRLIDGR 328
           ISNGGVFGSL GTPIINPPQSAILGMH  F+RPVA+ G+V V+PMMYVALTYDHRLIDGR
Sbjct: 372 ISNGGVFGSLFGTPIINPPQSAILGMHAIFDRPVAVGGKVEVRPMMYVALTYDHRLIDGR 431

Query: 329 EAVLFLQK 336
           EAV FL+K
Sbjct: 432 EAVTFLRK 439

The 2-oxoglutarate dehydrogenase complex catalyzes the overall conversion of 2-oxoglutarate to succinyl-CoA and CO(2). It contains multiple copies of 3 enzymatic components: 2-oxoglutarate dehydrogenase (E1), dihydrolipoamide succinyltransferase (E2) and lipoamide dehydrogenase (E3).

Mus musculus (taxid: 10090)

EC: 2

EC: .

EC: 3

EC: .

EC: 1

EC: .

EC: 6

EC: 1

>sp|P11179|ODO2_BOVIN Dihydrolipoyllysine-residue succinyltransferase component of 2-oxoglutarate dehydrogenase complex, mitochondrial OS=Bos taurus GN=DLST PE=1 SV=2

 Score =  287 bits (735), Expect = 9e-77,   Method: Compositional matrix adjust.
 Identities = 165/269 (61%), Positives = 185/269 (68%), Gaps = 23/269 (8%)

Query: 73  PSPSLCYSSAIEAATVKLPPADPTKEIS---GTRSEQRVKMNRMRQRIAQRLKEAQNVNA 129
           PSPS   +S   +A VK   A P  E     G RSE R KMNRMRQRIAQRLKEAQN  A
Sbjct: 190 PSPSQPLTSKPVSA-VKPTAAPPRAEAGAGVGLRSEHREKMNRMRQRIAQRLKEAQNTCA 248

Query: 130 MLTTFNEIDMSAIIEFRKAHLEAFQKKYGLKLGFMSPFIKASAYALQDQPVVNAVIEGT- 188
           MLTTFNEIDMS I E R  H +AF KK+ LKLGFMS F+KASA+ALQ+QPVVNAVI+   
Sbjct: 249 MLTTFNEIDMSNIQEMRARHKDAFLKKHNLKLGFMSAFVKASAFALQEQPVVNAVIDDAT 308

Query: 189 -DIVYRDYVDISVGMGRNESNLPRWCFNGLLSGVLVLTEHLNGKYCVSSRPSYERHTTGW 247
            ++VYRDY+DISV +       PR    GL+  V+   E +N  Y        ER  +  
Sbjct: 309 KEVVYRDYIDISVAVA-----TPR----GLVVPVIRNVETMN--YA-----DIERTISEL 352

Query: 248 ACYDRLNWNLAIEDSDGGTFTISNGGVFGSLLGTPIINPPQSAILGMHGTFERPVAIKGQ 307
               R N  LAIED DGGTFTISNGGVFGSL GTPIINPPQSAILGMH   +RPV I G+
Sbjct: 353 GEKARKN-ELAIEDMDGGTFTISNGGVFGSLFGTPIINPPQSAILGMHAIVDRPVVIGGK 411

Query: 308 VVVKPMMYVALTYDHRLIDGREAVLFLQK 336
           V V+PMMYVALTYDHRLIDGREAV FL+K
Sbjct: 412 VEVRPMMYVALTYDHRLIDGREAVTFLRK 440

The 2-oxoglutarate dehydrogenase complex catalyzes the overall conversion of 2-oxoglutarate to succinyl-CoA and CO(2). It contains multiple copies of 3 enzymatic components: 2-oxoglutarate dehydrogenase (E1), dihydrolipoamide succinyltransferase (E2) and lipoamide dehydrogenase (E3).

Bos taurus (taxid: 9913)

EC: 2

EC: .

EC: 3

EC: .

EC: 1

EC: .

EC: 6

EC: 1

>sp|Q869Y7|ODO2_DICDI Dihydrolipoyllysine-residue succinyltransferase component of 2-oxoglutarate dehydrogenase complex, mitochondrial OS=Dictyostelium discoideum GN=odhB PE=1 SV=1

 Score =  254 bits (648), Expect = 1e-66,   Method: Compositional matrix adjust.
 Identities = 131/230 (56%), Positives = 164/230 (71%), Gaps = 17/230 (7%)

Query: 107 RVKMNRMRQRIAQRLKEAQNVNAMLTTFNEIDMSAIIEFRKAHLEAFQKKYGLKLGFMSP 166
           RVKM R+RQR AQRLK++QN  AMLTTFNE+DMSA++  RK + + F+KK+G+K GFMS 
Sbjct: 212 RVKMTRIRQRTAQRLKDSQNTAAMLTTFNELDMSALMNMRKTYKDEFEKKHGVKFGFMSA 271

Query: 167 FIKASAYALQDQPVVNAVIEGTDIVYRDYVDISVGMGRNESNLPRWCFNGLLSGVLVLTE 226
           F+KAS  AL++QP+VNA +E  DIVY + V+I+V +       PR    GL+  V+   E
Sbjct: 272 FVKASTIALKEQPIVNASVEENDIVYHNNVNINVAVS-----APR----GLVVPVIRNCE 322

Query: 227 HLNGKYCVSSRPSYERHTTGWACYDRLNWNLAIEDSDGGTFTISNGGVFGSLLGTPIINP 286
           +L       S    E+     +   R N  LAIEDS GGTFTISNGGVFGS+ GTPIINP
Sbjct: 323 NL-------SFADIEKEIGRLSGLAR-NDALAIEDSIGGTFTISNGGVFGSMFGTPIINP 374

Query: 287 PQSAILGMHGTFERPVAIKGQVVVKPMMYVALTYDHRLIDGREAVLFLQK 336
           PQSAILGMH   +RP  + GQVVV+P+MY+ALTYDHR+IDGREAV FL+K
Sbjct: 375 PQSAILGMHAIKDRPYVVNGQVVVRPIMYLALTYDHRIIDGREAVTFLKK 424

The 2-oxoglutarate dehydrogenase complex catalyzes the overall conversion of 2-oxoglutarate to succinyl-CoA and CO(2). It contains multiple copies of three enzymatic components: 2-oxoglutarate dehydrogenase (E1), dihydrolipoamide succinyltransferase (E2) and lipoamide dehydrogenase (E3).

Dictyostelium discoideum (taxid: 44689)

EC: 2

EC: .

EC: 3

EC: .

EC: 1

EC: .

EC: 6

EC: 1

>sp|P19262|ODO2_YEAST Dihydrolipoyllysine-residue succinyltransferase component of 2-oxoglutarate dehydrogenase complex, mitochondrial OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=KGD2 PE=1 SV=2

 Score =  248 bits (634), Expect = 5e-65,   Method: Compositional matrix adjust.
 Identities = 149/329 (45%), Positives = 191/329 (58%), Gaps = 34/329 (10%)

Query: 24  TVKAGQQLFKIKP-TATSVVDWWSSPEEGSSAQ-SRGYSSSSSSSLCCCSSPSPSLCYSS 81
           TV  G++L +++P  A +     S PE    A+ S+G ++  +SS    S    +    +
Sbjct: 137 TVTVGEELAQVEPGEAPAEGSGESKPEPTEQAEPSQGVAARENSSEETASKKEAAPKKEA 196

Query: 82  AIEAATVKLPPAD-PTKEISGT--------------RSEQRVKMNRMRQRIAQRLKEAQN 126
           A +    +   AD P K +S                R+E RVKMNRMR RIA+RLKE+QN
Sbjct: 197 APKKEVTEPKKADQPKKTVSKAQEPPVASNSFTPFPRTETRVKMNRMRLRIAERLKESQN 256

Query: 127 VNAMLTTFNEIDMSAIIEFRKAHLEAFQKKYGLKLGFMSPFIKASAYALQDQPVVNAVIE 186
             A LTTFNE+DMSA++E RK + +   KK G K GFM  F KA   A +D P VN  IE
Sbjct: 257 TAASLTTFNEVDMSALMEMRKLYKDEIIKKTGTKFGFMGLFSKACTLAAKDIPAVNGAIE 316

Query: 187 GTDIVYRDYVDISVGMGRNESNLPRWCFNGLLSGVLVLTEHLNGKYCVSSRPSYERHTTG 246
           G  IVYRDY DISV +       P+    GL++ V+   E L       S    E     
Sbjct: 317 GDQIVYRDYTDISVAVA-----TPK----GLVTPVVRNAESL-------SVLDIENEIVR 360

Query: 247 WACYDRLNWNLAIEDSDGGTFTISNGGVFGSLLGTPIINPPQSAILGMHGTFERPVAIKG 306
            +   R +  L +ED  GGTFTISNGGVFGSL GTPIIN PQ+A+LG+HG  ERPV + G
Sbjct: 361 LSHKAR-DGKLTLEDMTGGTFTISNGGVFGSLYGTPIINSPQTAVLGLHGVKERPVTVNG 419

Query: 307 QVVVKPMMYVALTYDHRLIDGREAVLFLQ 335
           Q+V +PMMY+ALTYDHRL+DGREAV FL+
Sbjct: 420 QIVSRPMMYLALTYDHRLLDGREAVTFLK 448

The 2-oxoglutarate dehydrogenase complex catalyzes the overall conversion of 2-oxoglutarate to succinyl-CoA and CO(2). It contains multiple copies of three enzymatic components: 2-oxoglutarate dehydrogenase (E1), dihydrolipoamide succinyltransferase (E2) and lipoamide dehydrogenase (E3).

Saccharomyces cerevisiae (strain ATCC 204508 / S288c) (taxid: 559292)

EC: 2

EC: .

EC: 3

EC: .

EC: 1

EC: .

EC: 6

EC: 1

>sp|Q9FLQ4|ODO2A_ARATH Dihydrolipoyllysine-residue succinyltransferase component of 2-oxoglutarate dehydrogenase complex 1, mitochondrial OS=Arabidopsis thaliana GN=At5g55070 PE=1 SV=1

 Score =  246 bits (629), Expect = 2e-64,   Method: Compositional matrix adjust.
 Identities = 125/248 (50%), Positives = 169/248 (68%), Gaps = 26/248 (10%)

Query: 89  KLPPADPTKEISGTRSEQRVKMNRMRQRIAQRLKEAQNVNAMLTTFNEIDMSAIIEFRKA 148
           +LPP D          E+RV M R+R+R+A RLK++QN  A+LTTFNE+DM+ +++ R  
Sbjct: 228 QLPPKD---------RERRVPMTRLRKRVATRLKDSQNTFALLTTFNEVDMTNLMKLRSQ 278

Query: 149 HLEAFQKKYGLKLGFMSPFIKASAYALQDQPVVNAVIEGTDIVYRDYVDISVGMGRNESN 208
           + +AF +K+G+KLG MS FIKA+  ALQ QPVVNAVI+G DI+YRDYVDIS+ +G ++  
Sbjct: 279 YKDAFLEKHGVKLGLMSGFIKAAVSALQHQPVVNAVIDGDDIIYRDYVDISIAVGTSK-- 336

Query: 209 LPRWCFNGLLSGVLVLTEHLNGKYCVSSRPSYERHTTGWACYDRLNWNLAIEDSDGGTFT 268
                  GL+  V+   + +N           E+   G A        ++I++  GG+FT
Sbjct: 337 -------GLVVPVIRDADKMNFA-------DIEKTINGLA-KKATEGTISIDEMAGGSFT 381

Query: 269 ISNGGVFGSLLGTPIINPPQSAILGMHGTFERPVAIKGQVVVKPMMYVALTYDHRLIDGR 328
           +SNGGV+GSL+ TPIINPPQSAILGMH   +RP+ + G VV +PMMYVALTYDHRLIDGR
Sbjct: 382 VSNGGVYGSLISTPIINPPQSAILGMHSIVQRPMVVGGSVVPRPMMYVALTYDHRLIDGR 441

Query: 329 EAVLFLQK 336
           EAV FL++
Sbjct: 442 EAVYFLRR 449

The 2-oxoglutarate dehydrogenase complex catalyzes the overall conversion of 2-oxoglutarate to succinyl-CoA and CO(2). It contains multiple copies of three enzymatic components: 2-oxoglutarate dehydrogenase (E1), dihydrolipoamide succinyltransferase (E2) and lipoamide dehydrogenase (E3).

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 3

EC: .

EC: 1

EC: .

EC: 6

EC: 1

>sp|Q8H107|ODO2B_ARATH Dihydrolipoyllysine-residue succinyltransferase component of 2-oxoglutarate dehydrogenase complex 2, mitochondrial OS=Arabidopsis thaliana GN=At4g26910 PE=1 SV=2

 Score =  244 bits (622), Expect = 1e-63,   Method: Compositional matrix adjust.
 Identities = 123/245 (50%), Positives = 166/245 (67%), Gaps = 22/245 (8%)

Query: 92  PADPTKEISGTRSEQRVKMNRMRQRIAQRLKEAQNVNAMLTTFNEIDMSAIIEFRKAHLE 151
           P  P KE      E+RV M R+R+R+A RLK++QN  A+LTTFNE+DM+ +++ R  + +
Sbjct: 227 PQLPPKE-----RERRVPMTRLRKRVATRLKDSQNTFALLTTFNEVDMTNLMKLRSQYKD 281

Query: 152 AFQKKYGLKLGFMSPFIKASAYALQDQPVVNAVIEGTDIVYRDYVDISVGMGRNESNLPR 211
           AF +K+G+KLG MS FIKA+  ALQ QPVVNAVI+G DI+YRDYVDIS+ +G ++     
Sbjct: 282 AFYEKHGVKLGLMSGFIKAAVSALQHQPVVNAVIDGDDIIYRDYVDISIAVGTSK----- 336

Query: 212 WCFNGLLSGVLVLTEHLNGKYCVSSRPSYERHTTGWACYDRLNWNLAIEDSDGGTFTISN 271
               GL+  V+   + +N      +  S  +              ++I++  GG+FT+SN
Sbjct: 337 ----GLVVPVIRGADKMNFAEIEKTINSLAKKAN--------EGTISIDEMAGGSFTVSN 384

Query: 272 GGVFGSLLGTPIINPPQSAILGMHGTFERPVAIKGQVVVKPMMYVALTYDHRLIDGREAV 331
           GGV+GSL+ TPIINPPQSAILGMH    RP+ + G VV +PMMYVALTYDHRLIDGREAV
Sbjct: 385 GGVYGSLISTPIINPPQSAILGMHSIVSRPMVVGGSVVPRPMMYVALTYDHRLIDGREAV 444

Query: 332 LFLQK 336
            FL++
Sbjct: 445 YFLRR 449

The 2-oxoglutarate dehydrogenase complex catalyzes the overall conversion of 2-oxoglutarate to succinyl-CoA and CO(2). It contains multiple copies of three enzymatic components: 2-oxoglutarate dehydrogenase (E1), dihydrolipoamide succinyltransferase (E2) and lipoamide dehydrogenase (E3).

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 3

EC: .

EC: 1

EC: .

EC: 6

EC: 1

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	431
189239144	420	PREDICTED: similar to dihydrolipoamide s	0.698	0.716	0.588	8e-99
270010782	423	hypothetical protein TcasGA2_TC010587 [T	0.698	0.711	0.580	2e-98
157131795	491	dihydrolipoamide succinyltransferase com	0.693	0.608	0.571	1e-94
158287621	493	AGAP004055-PA [Anopheles gambiae str. PE	0.573	0.501	0.681	2e-94
170035646	482	dihydrolipoamide succinyltransferase com	0.691	0.618	0.567	2e-93
156551161	483	PREDICTED: dihydrolipoyllysine-residue s	0.575	0.513	0.655	3e-93
307175887	482	Dihydrolipoyllysine-residue succinyltran	0.575	0.514	0.651	2e-92
332031294	484	Dihydrolipoyllysine-residue succinyltran	0.577	0.514	0.645	9e-92
383863771	482	PREDICTED: dihydrolipoyllysine-residue s	0.570	0.510	0.649	2e-91
328714865	484	PREDICTED: dihydrolipoyllysine-residue s	0.547	0.487	0.664	2e-91

>gi|189239144|ref|XP_971313.2| PREDICTED: similar to dihydrolipoamide succinyltransferase component of 2-oxoglutarate dehydrogenase [Tribolium castaneum]

 Score =  367 bits (941), Expect = 8e-99,   Method: Compositional matrix adjust.
 Identities = 200/340 (58%), Positives = 234/340 (68%), Gaps = 39/340 (11%)

Query: 19  LEDGATVKAGQQLFKIKPTATSVVD----------------------WWSSPEEGSSAQS 56
           +EDGATVKAGQ LFK+K T  + V                           P    +A  
Sbjct: 83  VEDGATVKAGQNLFKLKLTGDAPVKKAPAEKAAEPAAAPPPPSPAAAATPPPPPKPAAGG 142

Query: 57  RGYSSSSSSSLCCCSSPSPSLCYSSAIEAATVKLPPADPTKEISGTRSEQRVKMNRMRQR 116
               +    +    S P  ++ ++ AIEAATVK+PP DPTKEISGTR+EQRVKMNRMR +
Sbjct: 143 PPPPAPPRPAAPLSSIPVAAIRHAQAIEAATVKVPPQDPTKEISGTRTEQRVKMNRMRLK 202

Query: 117 IAQRLKEAQNVNAMLTTFNEIDMSAIIEFRKAHLEAFQKKYGLKLGFMSPFIKASAYALQ 176
           IA+RLK+AQNVNAMLTTFNEIDMS I+EFRKA+ +AFQKKYGLKLGFMS F+KASAYALQ
Sbjct: 203 IAERLKQAQNVNAMLTTFNEIDMSYIMEFRKANQDAFQKKYGLKLGFMSAFVKASAYALQ 262

Query: 177 DQPVVNAVIEGTDIVYRDYVDISVGMGRNESNLPRWCFNGLLSGVLVLTEHLNGKYCVSS 236
           DQPVVNAVI+G +I+YRDYVDISV +       P+    GL+  V+   E +       S
Sbjct: 263 DQPVVNAVIDGQEIIYRDYVDISVAVA-----TPK----GLVVPVVRNVERM-------S 306

Query: 237 RPSYERHTTGWACYDRLNWNLAIEDSDGGTFTISNGGVFGSLLGTPIINPPQSAILGMHG 296
               E          R   +LA+ED DGGTFTISNGGVFGSLLGTPIINPPQSAILGMHG
Sbjct: 307 YADIELAINALGEKAR-KGSLAVEDMDGGTFTISNGGVFGSLLGTPIINPPQSAILGMHG 365

Query: 297 TFERPVAIKGQVVVKPMMYVALTYDHRLIDGREAVLFLQK 336
            FERPVA+KGQVV++PMMY+ALTYDHRLIDGREAV FL+K
Sbjct: 366 IFERPVAVKGQVVIRPMMYIALTYDHRLIDGREAVFFLRK 405

Source: Tribolium castaneum

Species: Tribolium castaneum

Genus: Tribolium

Family: Tenebrionidae

Order: Coleoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|270010782|gb|EFA07230.1| hypothetical protein TcasGA2_TC010587 [Tribolium castaneum]

 Score =  365 bits (938), Expect = 2e-98,   Method: Compositional matrix adjust.
 Identities = 199/343 (58%), Positives = 233/343 (67%), Gaps = 42/343 (12%)

Query: 19  LEDGATVKAGQQLFKIKPTATSVVD-------------------------WWSSPEEGSS 53
           +EDGATVKAGQ LFK+K T  + V                                   +
Sbjct: 83  VEDGATVKAGQNLFKLKLTGDAPVKKAPAEKAAEPAAAPPPPSPAAAATPPPPPKPAAPA 142

Query: 54  AQSRGYSSSSSSSLCCCSSPSPSLCYSSAIEAATVKLPPADPTKEISGTRSEQRVKMNRM 113
           A      +    +    S P  ++ ++ AIEAATVK+PP DPTKEISGTR+EQRVKMNRM
Sbjct: 143 AGGPPPPAPPRPAAPLSSIPVAAIRHAQAIEAATVKVPPQDPTKEISGTRTEQRVKMNRM 202

Query: 114 RQRIAQRLKEAQNVNAMLTTFNEIDMSAIIEFRKAHLEAFQKKYGLKLGFMSPFIKASAY 173
           R +IA+RLK+AQNVNAMLTTFNEIDMS I+EFRKA+ +AFQKKYGLKLGFMS F+KASAY
Sbjct: 203 RLKIAERLKQAQNVNAMLTTFNEIDMSYIMEFRKANQDAFQKKYGLKLGFMSAFVKASAY 262

Query: 174 ALQDQPVVNAVIEGTDIVYRDYVDISVGMGRNESNLPRWCFNGLLSGVLVLTEHLNGKYC 233
           ALQDQPVVNAVI+G +I+YRDYVDISV +       P+    GL+  V+   E +     
Sbjct: 263 ALQDQPVVNAVIDGQEIIYRDYVDISVAVA-----TPK----GLVVPVVRNVERM----- 308

Query: 234 VSSRPSYERHTTGWACYDRLNWNLAIEDSDGGTFTISNGGVFGSLLGTPIINPPQSAILG 293
             S    E          R   +LA+ED DGGTFTISNGGVFGSLLGTPIINPPQSAILG
Sbjct: 309 --SYADIELAINALGEKAR-KGSLAVEDMDGGTFTISNGGVFGSLLGTPIINPPQSAILG 365

Query: 294 MHGTFERPVAIKGQVVVKPMMYVALTYDHRLIDGREAVLFLQK 336
           MHG FERPVA+KGQVV++PMMY+ALTYDHRLIDGREAV FL+K
Sbjct: 366 MHGIFERPVAVKGQVVIRPMMYIALTYDHRLIDGREAVFFLRK 408

Source: Tribolium castaneum

Species: Tribolium castaneum

Genus: Tribolium

Family: Tenebrionidae

Order: Coleoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|157131795|ref|XP_001655939.1| dihydrolipoamide succinyltransferase component of 2-oxoglutarate dehydrogenase [Aedes aegypti] gi|157131797|ref|XP_001655940.1| dihydrolipoamide succinyltransferase component of 2-oxoglutarate dehydrogenase [Aedes aegypti] gi|108881775|gb|EAT46000.1| AAEL002764-PA [Aedes aegypti] gi|403182503|gb|EJY57434.1| AAEL002764-PB [Aedes aegypti]

 Score =  353 bits (906), Expect = 1e-94,   Method: Compositional matrix adjust.
 Identities = 196/343 (57%), Positives = 224/343 (65%), Gaps = 44/343 (12%)

Query: 21  DGATVKAGQQLFKIKPTATSVVDWWSSPEEGSSAQSRGYSSSSSSSLC------------ 68
           DG TVKAGQQLFK+K T  +        E  + A +                        
Sbjct: 151 DGDTVKAGQQLFKLKITGEAPAASAPKAEAAAPAAAAPPPPPPPPVAAAAASAPPPPPPA 210

Query: 69  ---------------CCSSPSPSLCYSSAIEAATVKLPPADPTKEISGTRSEQRVKMNRM 113
                              P  ++ ++ AI+AATVKLPPAD TKEI+GTR+EQRVKM RM
Sbjct: 211 AAAAPPPPPPKPTGPITKMPVAAMRHAQAIDAATVKLPPADYTKEITGTRTEQRVKMTRM 270

Query: 114 RQRIAQRLKEAQNVNAMLTTFNEIDMSAIIEFRKAHLEAFQKKYGLKLGFMSPFIKASAY 173
           R +IA RLKEAQN NAMLTTFNEIDMS I++FRK HLEAFQKKYG+KLGFMS F KA+AY
Sbjct: 271 RLKIASRLKEAQNTNAMLTTFNEIDMSFIMDFRKQHLEAFQKKYGMKLGFMSAFCKAAAY 330

Query: 174 ALQDQPVVNAVIEGTDIVYRDYVDISVGMGRNESNLPRWCFNGLLSGVLVLTEHLNGKYC 233
           ALQDQPVVNAVI   +I+YRDYVDISV +       P+    GL+  VL   E +N    
Sbjct: 331 ALQDQPVVNAVIGENEIIYRDYVDISVAVAS-----PK----GLVVPVLRNVEGMN---- 377

Query: 234 VSSRPSYERHTTGWACYDRLNWNLAIEDSDGGTFTISNGGVFGSLLGTPIINPPQSAILG 293
                  E    G A   +    LA+ED DGGTFTISNGGVFGSLLGTPIINPPQSAILG
Sbjct: 378 ---FADIELAIAGLADKAK-KGTLAVEDMDGGTFTISNGGVFGSLLGTPIINPPQSAILG 433

Query: 294 MHGTFERPVAIKGQVVVKPMMYVALTYDHRLIDGREAVLFLQK 336
           MHG FERP+A+KGQVVV+PMMYVALTYDHRLIDGREAV FL+K
Sbjct: 434 MHGIFERPIAVKGQVVVRPMMYVALTYDHRLIDGREAVTFLRK 476

Source: Aedes aegypti

Species: Aedes aegypti

Genus: Aedes

Family: Culicidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|158287621|ref|XP_309608.4| AGAP004055-PA [Anopheles gambiae str. PEST] gi|347971151|ref|XP_003436700.1| AGAP004055-PB [Anopheles gambiae str. PEST] gi|157019510|gb|EAA05341.5| AGAP004055-PA [Anopheles gambiae str. PEST] gi|333466611|gb|EGK96314.1| AGAP004055-PB [Anopheles gambiae str. PEST]

 Score =  352 bits (904), Expect = 2e-94,   Method: Compositional matrix adjust.
 Identities = 180/264 (68%), Positives = 206/264 (78%), Gaps = 17/264 (6%)

Query: 73  PSPSLCYSSAIEAATVKLPPADPTKEISGTRSEQRVKMNRMRQRIAQRLKEAQNVNAMLT 132
           P  ++ ++ AIEAATVK+PPAD TKEI+GTR+EQRVKM RMR +IA RLKEAQN NAMLT
Sbjct: 232 PVAAIRHAQAIEAATVKVPPADYTKEITGTRTEQRVKMTRMRLKIASRLKEAQNTNAMLT 291

Query: 133 TFNEIDMSAIIEFRKAHLEAFQKKYGLKLGFMSPFIKASAYALQDQPVVNAVIEGTDIVY 192
           TFNEIDMS I++FRK HLEAFQKKYG+KLGFMS F KA+AYALQDQPVVNAVI+  +I+Y
Sbjct: 292 TFNEIDMSFIMDFRKQHLEAFQKKYGMKLGFMSAFCKAAAYALQDQPVVNAVIDENEIIY 351

Query: 193 RDYVDISVGMGRNESNLPRWCFNGLLSGVLVLTEHLNGKYCVSSRPSYERHTTGWACYDR 252
           RDYVDISV +       P+    GL+  VL   E +N  Y        E    G A   +
Sbjct: 352 RDYVDISVAVAS-----PK----GLVVPVLRNVEGMN--YA-----DIELAIAGLADKAK 395

Query: 253 LNWNLAIEDSDGGTFTISNGGVFGSLLGTPIINPPQSAILGMHGTFERPVAIKGQVVVKP 312
               LA+ED DGGTFTISNGGVFGSLLGTPIINPPQSAILGMHG FERP+A+KGQVV++P
Sbjct: 396 -KGTLAVEDMDGGTFTISNGGVFGSLLGTPIINPPQSAILGMHGIFERPIAVKGQVVIRP 454

Query: 313 MMYVALTYDHRLIDGREAVLFLQK 336
           MMYVALTYDHRLIDGREAV FL+K
Sbjct: 455 MMYVALTYDHRLIDGREAVTFLRK 478

Source: Anopheles gambiae str. PEST

Species: Anopheles gambiae

Genus: Anopheles

Family: Culicidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|170035646|ref|XP_001845679.1| dihydrolipoamide succinyltransferase component of 2-oxoglutarate dehydrogenase [Culex quinquefasciatus] gi|167877798|gb|EDS41181.1| dihydrolipoamide succinyltransferase component of 2-oxoglutarate dehydrogenase [Culex quinquefasciatus]

 Score =  349 bits (895), Expect = 2e-93,   Method: Compositional matrix adjust.
 Identities = 193/340 (56%), Positives = 224/340 (65%), Gaps = 42/340 (12%)

Query: 21  DGATVKAGQQLFKIKPTATSVVDWWSSPEEGSSAQSRGYSSSSSSSLC------------ 68
           DG TVK+GQQLFK+K T  +        E  + A +                        
Sbjct: 146 DGDTVKSGQQLFKLKVTGEAPKAAAKPAEAAAPAAAAPPPPPPPPVAAARPPPPAAAAAA 205

Query: 69  -----------CCSSPSPSLCYSSAIEAATVKLPPADPTKEISGTRSEQRVKMNRMRQRI 117
                          P  ++ ++ AIEAATVK+PPAD +KEI+GTRSEQ VKM RMR +I
Sbjct: 206 PPPPPPRPAAPISKMPVAAIRHAQAIEAATVKVPPADYSKEITGTRSEQHVKMTRMRLKI 265

Query: 118 AQRLKEAQNVNAMLTTFNEIDMSAIIEFRKAHLEAFQKKYGLKLGFMSPFIKASAYALQD 177
           A RLKEAQN NAMLTTFNEIDMS I++FRK HL+AF KKYG+K GFMS F KA+AYALQD
Sbjct: 266 ASRLKEAQNTNAMLTTFNEIDMSFIMDFRKQHLDAFVKKYGIKFGFMSAFCKATAYALQD 325

Query: 178 QPVVNAVIEGTDIVYRDYVDISVGMGRNESNLPRWCFNGLLSGVLVLTEHLNGKYCVSSR 237
           QPVVNAVIE  +IVYRDYVDISV +       P+    GL+  VL   E +N  Y     
Sbjct: 326 QPVVNAVIEENEIVYRDYVDISVAVAS-----PK----GLVVPVLRNVEGMN--YA---- 370

Query: 238 PSYERHTTGWACYDRL-NWNLAIEDSDGGTFTISNGGVFGSLLGTPIINPPQSAILGMHG 296
              +   +  A  D+     LA+ED DGGTFTISNGGVFGSLLGTPIINPPQSAILGMHG
Sbjct: 371 ---DIELSIAALADKAKKGTLAVEDMDGGTFTISNGGVFGSLLGTPIINPPQSAILGMHG 427

Query: 297 TFERPVAIKGQVVVKPMMYVALTYDHRLIDGREAVLFLQK 336
            FERP+A+KGQVVV+PMMYVALTYDHRLIDGREAV FL+K
Sbjct: 428 IFERPIAVKGQVVVRPMMYVALTYDHRLIDGREAVTFLRK 467

Source: Culex quinquefasciatus

Species: Culex quinquefasciatus

Genus: Culex

Family: Culicidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|156551161|ref|XP_001605023.1| PREDICTED: dihydrolipoyllysine-residue succinyltransferase component of 2-oxoglutarate dehydrogenase complex, mitochondrial-like [Nasonia vitripennis]

 Score =  348 bits (892), Expect = 3e-93,   Method: Compositional matrix adjust.
 Identities = 175/267 (65%), Positives = 209/267 (78%), Gaps = 19/267 (7%)

Query: 71  SSPSPSLCYSSAIEAATVKLPPADPTKEISGTRSEQRVKMNRMRQRIAQRLKEAQNVNAM 130
           S P  ++ ++ ++E A V+LPP D T+EI GTR+EQRVKMNRMR RIA+RLK+AQN NAM
Sbjct: 220 SMPVAAIKHAQSLEGAKVQLPPQDYTREIIGTRTEQRVKMNRMRLRIAERLKDAQNTNAM 279

Query: 131 LTTFNEIDMSAIIEFRKAHLEAFQKKYGLKLGFMSPFIKASAYALQDQPVVNAVIEGTDI 190
           LTTFNEIDMSA+I+FRK++ E+FQKKYGLKLGFMSPFI ASAYAL+DQPVVNAVI+GTDI
Sbjct: 280 LTTFNEIDMSALIDFRKSNQESFQKKYGLKLGFMSPFIAASAYALKDQPVVNAVIDGTDI 339

Query: 191 VYRDYVDISVGMGRNESNLPRWCFNGLLSGVLVLTEHLNGKYCVSSRPSYERHTTGWACY 250
           VYRDYVDISV +       P+    GL+  VL   E+ N           E      A  
Sbjct: 340 VYRDYVDISVAVA-----TPK----GLVVPVLRSVENKN---------FAEIEIAMAAVG 381

Query: 251 DRL-NWNLAIEDSDGGTFTISNGGVFGSLLGTPIINPPQSAILGMHGTFERPVAIKGQVV 309
           D+     +++ED DGGTFTISNGGVFGSL+GTPIINPPQSAILGMHG F+RP+A+KGQVV
Sbjct: 382 DKARKGKISVEDMDGGTFTISNGGVFGSLMGTPIINPPQSAILGMHGVFDRPIAVKGQVV 441

Query: 310 VKPMMYVALTYDHRLIDGREAVLFLQK 336
           ++PMMYVALTYDHRLIDGREAV+FL+K
Sbjct: 442 IRPMMYVALTYDHRLIDGREAVMFLRK 468

Source: Nasonia vitripennis

Species: Nasonia vitripennis

Genus: Nasonia

Family: Pteromalidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|307175887|gb|EFN65702.1| Dihydrolipoyllysine-residue succinyltransferase component of 2-oxoglutarate dehydrogenase complex, mitochondrial [Camponotus floridanus]

 Score =  345 bits (885), Expect = 2e-92,   Method: Compositional matrix adjust.
 Identities = 174/267 (65%), Positives = 205/267 (76%), Gaps = 19/267 (7%)

Query: 71  SSPSPSLCYSSAIEAATVKLPPADPTKEISGTRSEQRVKMNRMRQRIAQRLKEAQNVNAM 130
           S P  ++ ++ ++E A V+LPP D T+EI GTR+EQRVKMNRMR RIA+RLKEAQN NAM
Sbjct: 219 SMPVAAIKHAQSLEGAKVQLPPVDYTREIIGTRTEQRVKMNRMRLRIAERLKEAQNTNAM 278

Query: 131 LTTFNEIDMSAIIEFRKAHLEAFQKKYGLKLGFMSPFIKASAYALQDQPVVNAVIEGTDI 190
           LTTFNEIDMS I+EFRK H E+F KKYG+KLGFMSPF+ ASAYAL+DQPVVNAVI+GTDI
Sbjct: 279 LTTFNEIDMSCIMEFRKTHQESFTKKYGIKLGFMSPFVAASAYALKDQPVVNAVIDGTDI 338

Query: 191 VYRDYVDISVGMGRNESNLPRWCFNGLLSGVLVLTEHLNGKYCVSSRPSYERHTTGWACY 250
           VYRDYVDISV +       P+    GL+  VL           V S+   E      A  
Sbjct: 339 VYRDYVDISVAVA-----TPK----GLVVPVL---------RSVESKNFAEIEIALAALG 380

Query: 251 DRL-NWNLAIEDSDGGTFTISNGGVFGSLLGTPIINPPQSAILGMHGTFERPVAIKGQVV 309
           D+     + +ED DGGTFTISNGGVFGSLLGTPIINPPQSAILGMHG F+RP+A+KGQVV
Sbjct: 381 DKARKGKITVEDMDGGTFTISNGGVFGSLLGTPIINPPQSAILGMHGVFDRPIAVKGQVV 440

Query: 310 VKPMMYVALTYDHRLIDGREAVLFLQK 336
           ++PMMY+ALTYDHRLIDGREAV+FL+K
Sbjct: 441 IRPMMYIALTYDHRLIDGREAVMFLRK 467

Source: Camponotus floridanus

Species: Camponotus floridanus

Genus: Camponotus

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|332031294|gb|EGI70822.1| Dihydrolipoyllysine-residue succinyltransferase component of 2-oxoglutarate dehydrogenase complex, mitochondrial [Acromyrmex echinatior]

 Score =  343 bits (880), Expect = 9e-92,   Method: Compositional matrix adjust.
 Identities = 173/268 (64%), Positives = 207/268 (77%), Gaps = 19/268 (7%)

Query: 70  CSSPSPSLCYSSAIEAATVKLPPADPTKEISGTRSEQRVKMNRMRQRIAQRLKEAQNVNA 129
            S P  ++ ++ ++E+A V+LPP D T+EI GTR+EQRVKMNRMR RIA+RLK+AQN NA
Sbjct: 220 ASMPVAAIKHAQSLESAKVQLPPTDYTREIIGTRTEQRVKMNRMRLRIAERLKDAQNTNA 279

Query: 130 MLTTFNEIDMSAIIEFRKAHLEAFQKKYGLKLGFMSPFIKASAYALQDQPVVNAVIEGTD 189
           MLTTFNEIDMS IIEFRKAH E+F KKYG+KLGFMSPF+ ASAYAL+DQPVVNAVI+GTD
Sbjct: 280 MLTTFNEIDMSRIIEFRKAHQESFTKKYGIKLGFMSPFVMASAYALKDQPVVNAVIDGTD 339

Query: 190 IVYRDYVDISVGMGRNESNLPRWCFNGLLSGVLVLTEHLN-GKYCVSSRPSYERHTTGWA 248
           IVYRDYVDISV +   +         GL+  VL   E+ N  +  ++     E+   G  
Sbjct: 340 IVYRDYVDISVAVATPK---------GLVVPVLRSVENKNFAEIEIALAALGEKARKG-- 388

Query: 249 CYDRLNWNLAIEDSDGGTFTISNGGVFGSLLGTPIINPPQSAILGMHGTFERPVAIKGQV 308
                   + IED DGGTFTISNGGVFGS+LGTPIINPPQSAILGMHG F+RP+AIKG+V
Sbjct: 389 -------KITIEDMDGGTFTISNGGVFGSMLGTPIINPPQSAILGMHGVFDRPIAIKGEV 441

Query: 309 VVKPMMYVALTYDHRLIDGREAVLFLQK 336
            ++PMMYVALTYDHRLIDGREAV+FL+K
Sbjct: 442 KIRPMMYVALTYDHRLIDGREAVMFLRK 469

Source: Acromyrmex echinatior

Species: Acromyrmex echinatior

Genus: Acromyrmex

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|383863771|ref|XP_003707353.1| PREDICTED: dihydrolipoyllysine-residue succinyltransferase component of 2-oxoglutarate dehydrogenase complex, mitochondrial-like [Megachile rotundata]

 Score =  342 bits (877), Expect = 2e-91,   Method: Compositional matrix adjust.
 Identities = 172/265 (64%), Positives = 206/265 (77%), Gaps = 19/265 (7%)

Query: 73  PSPSLCYSSAIEAATVKLPPADPTKEISGTRSEQRVKMNRMRQRIAQRLKEAQNVNAMLT 132
           P  ++ ++ A+E+A V+LPP D ++EI GTR+EQRVKMNRMR RIA+RLK+AQN NAMLT
Sbjct: 221 PVAAIKHAQALESAKVQLPPTDYSREIIGTRTEQRVKMNRMRIRIAERLKDAQNTNAMLT 280

Query: 133 TFNEIDMSAIIEFRKAHLEAFQKKYGLKLGFMSPFIKASAYALQDQPVVNAVIEGTDIVY 192
           TFNEIDMS I+EFRK H EAF KKYGLKLGFMSPFI A++YAL+DQPVVNAVI+GTDIVY
Sbjct: 281 TFNEIDMSRIMEFRKTHQEAFTKKYGLKLGFMSPFIAAASYALKDQPVVNAVIDGTDIVY 340

Query: 193 RDYVDISVGMGRNESNLPRWCFNGLLSGVLVLTEHLNGKYCVSSRPSYERHTTGWACYDR 252
           RDYVDISV +       P+    GL+  VL   E  N  Y        +      A  D+
Sbjct: 341 RDYVDISVAVA-----TPK----GLVVPVLRSVE--NKNYA-------DIEIALAALSDK 382

Query: 253 L-NWNLAIEDSDGGTFTISNGGVFGSLLGTPIINPPQSAILGMHGTFERPVAIKGQVVVK 311
                +++ED DGGTFTISNGGVFGSL+GTPIINPPQSAILGMHG F+RP+A+KG+VV++
Sbjct: 383 ARKGKISVEDMDGGTFTISNGGVFGSLMGTPIINPPQSAILGMHGVFDRPIAVKGEVVIR 442

Query: 312 PMMYVALTYDHRLIDGREAVLFLQK 336
           PMMYVALTYDHRLIDGREAV+FL+K
Sbjct: 443 PMMYVALTYDHRLIDGREAVMFLRK 467

Source: Megachile rotundata

Species: Megachile rotundata

Genus: Megachile

Family: Megachilidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|328714865|ref|XP_001944020.2| PREDICTED: dihydrolipoyllysine-residue succinyltransferase component of 2-oxoglutarate dehydrogenase complex, mitochondrial-like [Acyrthosiphon pisum]

 Score =  342 bits (877), Expect = 2e-91,   Method: Compositional matrix adjust.
 Identities = 168/253 (66%), Positives = 199/253 (78%), Gaps = 17/253 (6%)

Query: 84  EAATVKLPPADPTKEISGTRSEQRVKMNRMRQRIAQRLKEAQNVNAMLTTFNEIDMSAII 143
           + ATVK+PP DPTKEI+GTRSE RVKMNRMR RIAQRLK+AQN NAMLTTFNEIDMS+I+
Sbjct: 234 QTATVKVPPTDPTKEIAGTRSEHRVKMNRMRLRIAQRLKDAQNTNAMLTTFNEIDMSSIM 293

Query: 144 EFRKAHLEAFQKKYGLKLGFMSPFIKASAYALQDQPVVNAVIEGTDIVYRDYVDISVGMG 203
           +FRK +L+ FQKK+GLKLGFMS F+KASAYALQDQPVVNAVIEG +I+YRDYVDISV + 
Sbjct: 294 DFRKTNLDTFQKKHGLKLGFMSAFLKASAYALQDQPVVNAVIEGNEIIYRDYVDISVAVA 353

Query: 204 RNESNLPRWCFNGLLSGVLVLTEHLNGKYCVSSRPSYERHTTGWACYDRLNWNLAIEDSD 263
                 P+    GLL  V+   + +N      +  +        A        + +ED D
Sbjct: 354 -----TPK----GLLVPVVRNVQDMNYADIEKTIAALGEKAKRGA--------IDVEDMD 396

Query: 264 GGTFTISNGGVFGSLLGTPIINPPQSAILGMHGTFERPVAIKGQVVVKPMMYVALTYDHR 323
           GGTFT+SNGGVFGSL+GTPIINPPQSAILGMHG FERP+A+KGQVV++PMMY+ALTYDHR
Sbjct: 397 GGTFTVSNGGVFGSLMGTPIINPPQSAILGMHGIFERPIAVKGQVVIRPMMYIALTYDHR 456

Query: 324 LIDGREAVLFLQK 336
           L+DGREAVLFL+K
Sbjct: 457 LVDGREAVLFLRK 469

Source: Acyrthosiphon pisum

Species: Acyrthosiphon pisum

Genus: Acyrthosiphon

Family: Aphididae

Order: Hemiptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	431
FB|FBgn0037891	468	CG5214 [Drosophila melanogaste	0.271	0.25	0.752	1.1e-84
UNIPROTKB|E1C7I0	461	DLST "Uncharacterized protein"	0.542	0.507	0.637	5.9e-74
UNIPROTKB|E2R0H0	455	DLST "Uncharacterized protein"	0.547	0.518	0.626	3.3e-71
WB|WBGene00020950	463	dlst-1 [Caenorhabditis elegans	0.280	0.261	0.598	7.6e-71
ZFIN|ZDB-GENE-030326-1	458	dlst "dihydrolipoamide S-succi	0.503	0.473	0.639	2.6e-69
UNIPROTKB|Q9N0F1	455	DLST "Dihydrolipoyllysine-resi	0.531	0.503	0.625	3.5e-68
UNIPROTKB|B7Z5W8	367	DLST "cDNA FLJ55034, highly si	0.540	0.634	0.629	1.1e-66
UNIPROTKB|P36957	453	DLST "Dihydrolipoyllysine-resi	0.540	0.514	0.629	1.1e-66
RGD|1359615	454	Dlst "dihydrolipoamide S-succi	0.531	0.504	0.616	1.6e-65
UNIPROTKB|G3V6P2	454	Dlst "Dihydrolipoyllysine-resi	0.531	0.504	0.616	1.6e-65

FB|FBgn0037891 CG5214 [Drosophila melanogaster (taxid:7227)]

 Score = 445 (161.7 bits), Expect = 1.1e-84, Sum P(3) = 1.1e-84
 Identities = 88/117 (75%), Positives = 102/117 (87%)

Query:    86 ATVKLPPADPTKEISGTRSEQRVKMNRMRQRIAQRLKEAQNVNAMLTTFNEIDMSAIIEF 145
             A VK+PPAD +++I GTRSEQRVKMNRMR +IA RLK+AQN  AMLTTFNE+DMS  ++F
Sbjct:   220 AQVKVPPADGSRQILGTRSEQRVKMNRMRLKIAARLKDAQNTCAMLTTFNEVDMSYAMDF 279

Query:   146 RKAHLEAFQKKYGLKLGFMSPFIKASAYALQDQPVVNAVIEGTDIVYRDYVDISVGM 202
             RK +L+AF KKYG+K GFMS F KASAYALQDQPVVNAVI+GTDIVYRDYVDISV +
Sbjct:   280 RKQNLDAFTKKYGIKFGFMSIFAKASAYALQDQPVVNAVIDGTDIVYRDYVDISVAV 336

GO:0009353 "mitochondrial oxoglutarate dehydrogenase complex" evidence=ISS

GO:0004149 "dihydrolipoyllysine-residue succinyltransferase activity" evidence=ISS

GO:0006099 "tricarboxylic acid cycle" evidence=ISS

GO:0005811 "lipid particle" evidence=IDA

GO:0005875 "microtubule associated complex" evidence=IDA

UNIPROTKB|E1C7I0 DLST "Uncharacterized protein" [Gallus gallus (taxid:9031)]

 Score = 721 (258.9 bits), Expect = 5.9e-74, Sum P(2) = 5.9e-74
 Identities = 162/254 (63%), Positives = 182/254 (71%)

Query:    85 AATVKLPPADPTKEISGTRSEQRVKMNRMRQRIAQRLKEAQNVNAMLTTFNEIDMSAIIE 144
             AA V  PP +      G RSE RVKMNRMRQRIAQRLKEAQN  AMLTTFNEIDMS I E
Sbjct:   211 AAPVAAPPGEAVPS-KGARSEHRVKMNRMRQRIAQRLKEAQNTCAMLTTFNEIDMSNIRE 269

Query:   145 FRKAHLEAFQKKYGLKLGFMSPFIKASAYALQDQPVVNAVIEGT--DIVYRDYVDISVGM 202
              R  H + F KK+ LKLGFMS F+KASA+ALQDQP+VNAVI+ T  +IVYRDYVDISV +
Sbjct:   270 MRAVHKDPFLKKHNLKLGFMSAFVKASAFALQDQPIVNAVIDDTTKEIVYRDYVDISVAV 329

Query:   203 GRNESNLPRWCFNGLLSGVLVLTEHLNGKYCVSSRPSYERHTTGWACYDRLNWNLAIEDS 262
                    PR    GL+  V+   E++N  +    R  YE          R N  LAIED 
Sbjct:   330 AT-----PR----GLVVPVVRKVENMN--FADIERAIYELGEKA-----RKN-ELAIEDM 372

Query:   263 DGGTFTISNGGVFGSLLGTPIINPPQSAILGMHGTFERPVAIKGQVVVKPMMYVALTYDH 322
             DGGTFTISNGGVFGSL GTPIINPPQSAILGMH  F+RPVA+ G++ V+PMMYVALTYDH
Sbjct:   373 DGGTFTISNGGVFGSLFGTPIINPPQSAILGMHAIFDRPVAVGGKIEVRPMMYVALTYDH 432

Query:   323 RLIDGREAVLFLQK 336
             RLIDGREAV FL+K
Sbjct:   433 RLIDGREAVTFLRK 446

GO:0004149 "dihydrolipoyllysine-residue succinyltransferase activity" evidence=IEA

GO:0006099 "tricarboxylic acid cycle" evidence=IEA

GO:0045252 "oxoglutarate dehydrogenase complex" evidence=IEA

GO:0005634 "nucleus" evidence=IEA

GO:0005739 "mitochondrion" evidence=IEA

UNIPROTKB|E2R0H0 DLST "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 699 (251.1 bits), Expect = 3.3e-71, Sum P(2) = 3.3e-71
 Identities = 161/257 (62%), Positives = 183/257 (71%)

Query:    82 AIEAATVKLPPADPTKEISGTRSEQRVKMNRMRQRIAQRLKEAQNVNAMLTTFNEIDMSA 141
             A++ A    P A+P     G RSE R KMNRMRQRIAQRLKEAQN  AMLTTFNEIDMS 
Sbjct:   203 AVKPAAAP-PVAEPGAG-KGLRSEHREKMNRMRQRIAQRLKEAQNTCAMLTTFNEIDMSN 260

Query:   142 IIEFRKAHLEAFQKKYGLKLGFMSPFIKASAYALQDQPVVNAVIEGT--DIVYRDYVDIS 199
             I E R  H +AF KK+ LKLGFMS F+KASA+ALQ+QPVVNAVI+    ++VYRDY+DIS
Sbjct:   261 IQEMRARHKDAFLKKHNLKLGFMSAFVKASAFALQEQPVVNAVIDDATKEVVYRDYIDIS 320

Query:   200 VGMGRNESNLPRWCFNGLLSGVLVLTEHLNGKYCVSSRPSYERHTTGWACYDRLNWNLAI 259
             V +       PR    GL+  V+   E +N  Y        ER  +      R N  LAI
Sbjct:   321 VAVAT-----PR----GLVVPVIRNVEAMN--YA-----DIERTISELGEKARKN-ELAI 363

Query:   260 EDSDGGTFTISNGGVFGSLLGTPIINPPQSAILGMHGTFERPVAIKGQVVVKPMMYVALT 319
             ED DGGTFTISNGGVFGSL GTPIINPPQSAILGMHG F+RPVA+ G+V V+PMMYVALT
Sbjct:   364 EDMDGGTFTISNGGVFGSLFGTPIINPPQSAILGMHGIFDRPVAVGGKVEVRPMMYVALT 423

Query:   320 YDHRLIDGREAVLFLQK 336
             YDHRLIDGREAV FL+K
Sbjct:   424 YDHRLIDGREAVTFLRK 440

GO:0005739 "mitochondrion" evidence=IEA

GO:0005634 "nucleus" evidence=IEA

GO:0045252 "oxoglutarate dehydrogenase complex" evidence=IEA

GO:0006099 "tricarboxylic acid cycle" evidence=IEA

GO:0004149 "dihydrolipoyllysine-residue succinyltransferase activity" evidence=IEA

WB|WBGene00020950 dlst-1 [Caenorhabditis elegans (taxid:6239)]

 Score = 365 (133.5 bits), Expect = 7.6e-71, Sum P(3) = 7.6e-71
 Identities = 73/122 (59%), Positives = 93/122 (76%)

Query:    82 AIEAATVKLPPA-DPTKEISGTRSEQRVKMNRMRQRIAQRLKEAQNVNAMLTTFNEIDMS 140
             A+    V +P   DP+  I+G R E RVK NRMR RIAQRLK+AQN  AMLTTFNEIDMS
Sbjct:   210 AVPVTRVVVPKGVDPSHAITGARDEVRVKANRMRMRIAQRLKDAQNTYAMLTTFNEIDMS 269

Query:   141 AIIEFRKAHLEAFQKKYGLKLGFMSPFIKASAYALQDQPVVNAVIEGTDIVYRDYVDISV 200
             ++IE RK + + F  K+G+KLG MSPF++A+AYALQ+ PVVNAV++  +IVYR +VDISV
Sbjct:   270 SLIEMRKTYQKDFVAKHGVKLGMMSPFVRAAAYALQESPVVNAVLDENEIVYRHFVDISV 329

Query:   201 GM 202
              +
Sbjct:   330 AV 331

GO:0008152 "metabolic process" evidence=IEA

GO:0016746 "transferase activity, transferring acyl groups" evidence=IEA

GO:0004149 "dihydrolipoyllysine-residue succinyltransferase activity" evidence=IEA

GO:0006099 "tricarboxylic acid cycle" evidence=IEA

GO:0045252 "oxoglutarate dehydrogenase complex" evidence=IEA

GO:0040010 "positive regulation of growth rate" evidence=IMP

GO:0009792 "embryo development ending in birth or egg hatching" evidence=IMP

GO:0040007 "growth" evidence=IMP

GO:0002119 "nematode larval development" evidence=IMP

GO:0000003 "reproduction" evidence=IMP

GO:0006898 "receptor-mediated endocytosis" evidence=IMP

GO:0040011 "locomotion" evidence=IMP

ZFIN|ZDB-GENE-030326-1 dlst "dihydrolipoamide S-succinyltransferase" [Danio rerio (taxid:7955)]

 Score = 675 (242.7 bits), Expect = 2.6e-69, Sum P(2) = 2.6e-69
 Identities = 151/236 (63%), Positives = 172/236 (72%)

Query:   103 RSEQRVKMNRMRQRIAQRLKEAQNVNAMLTTFNEIDMSAIIEFRKAHLEAFQKKYGLKLG 162
             RSE RVKMNRMR RIAQRLKEAQN  AMLTTFNE+DMS I E R  + +AF KK+G+KLG
Sbjct:   225 RSEHRVKMNRMRLRIAQRLKEAQNTCAMLTTFNEVDMSNITEMRTHYKDAFLKKHGIKLG 284

Query:   163 FMSPFIKASAYALQDQPVVNAVIEGT--DIVYRDYVDISVGMGRNESNLPRWCFNGLLSG 220
             FMS F+KA+AYAL DQP VNAVI+ T  +IVYRDYVDISV +       P+    GL+  
Sbjct:   285 FMSAFVKAAAYALTDQPAVNAVIDDTTKEIVYRDYVDISVAVAT-----PK----GLVVP 335

Query:   221 VLVLTEHLNGKYCVSSRPSYERHTTGWACYDRLNWNLAIEDSDGGTFTISNGGVFGSLLG 280
             V+   E +N           E+         R N  LA+ED DGGTFTISNGGVFGS+ G
Sbjct:   336 VIRGVEGMNFA-------DIEKTINELGEKARKN-ELAVEDMDGGTFTISNGGVFGSMFG 387

Query:   281 TPIINPPQSAILGMHGTFERPVAIKGQVVVKPMMYVALTYDHRLIDGREAVLFLQK 336
             TPIINPPQSAILGMHG F+RPVAI G+V V+PMMYVALTYDHRLIDGREAV FL+K
Sbjct:   388 TPIINPPQSAILGMHGIFDRPVAIAGKVEVRPMMYVALTYDHRLIDGREAVTFLRK 443

GO:0016746 "transferase activity, transferring acyl groups" evidence=IEA

GO:0006099 "tricarboxylic acid cycle" evidence=IEA

GO:0045252 "oxoglutarate dehydrogenase complex" evidence=IEA

GO:0008152 "metabolic process" evidence=IEA

GO:0004149 "dihydrolipoyllysine-residue succinyltransferase activity" evidence=IEA

GO:0016740 "transferase activity" evidence=IEA

UNIPROTKB|Q9N0F1 DLST "Dihydrolipoyllysine-residue succinyltransferase component of 2-oxoglutarate dehydrogenase complex, mitochondrial" [Sus scrofa (taxid:9823)]

 Score = 692 (248.7 bits), Expect = 3.5e-68, P = 3.5e-68
 Identities = 155/248 (62%), Positives = 177/248 (71%)

Query:    91 PPADPTKEISGTRSEQRVKMNRMRQRIAQRLKEAQNVNAMLTTFNEIDMSAIIEFRKAHL 150
             PP      + G R+E R KMNRMRQRIAQRLKEAQN  AMLTTFNEIDMS I + R  H 
Sbjct:   210 PPVAEPGAVKGLRAEHREKMNRMRQRIAQRLKEAQNTCAMLTTFNEIDMSNIQDMRARHK 269

Query:   151 EAFQKKYGLKLGFMSPFIKASAYALQDQPVVNAVIEGT--DIVYRDYVDISVGMGRNESN 208
             EAF KK+ LKLGFMS F+KASA+ALQ+QPVVNAVI+ T  ++VYRDY+DISV +      
Sbjct:   270 EAFLKKHNLKLGFMSAFVKASAFALQEQPVVNAVIDDTTKEVVYRDYIDISVAVAT---- 325

Query:   209 LPRWCFNGLLSGVLVLTEHLNGKYCVSSRPSYERHTTGWACYDRLNWNLAIEDSDGGTFT 268
              PR    GL+  V+   E +N  Y        ER  +      R N  LAIED DGGTFT
Sbjct:   326 -PR----GLVVPVIRNVETMN--YA-----DIERTISELGEKARKN-ELAIEDMDGGTFT 372

Query:   269 ISNGGVFGSLLGTPIINPPQSAILGMHGTFERPVAIKGQVVVKPMMYVALTYDHRLIDGR 328
             ISNGGVFGSL GTPIINPPQSAILGMH   +RPVA+ G+V ++PMMYVALTYDHRLIDGR
Sbjct:   373 ISNGGVFGSLFGTPIINPPQSAILGMHAIVDRPVAVGGKVEIRPMMYVALTYDHRLIDGR 432

Query:   329 EAVLFLQK 336
             EAV FL+K
Sbjct:   433 EAVTFLRK 440

GO:0033512 "L-lysine catabolic process to acetyl-CoA via saccharopine" evidence=IEA

GO:0005739 "mitochondrion" evidence=IEA

GO:0005634 "nucleus" evidence=IEA

GO:0004149 "dihydrolipoyllysine-residue succinyltransferase activity" evidence=IEA

GO:0006099 "tricarboxylic acid cycle" evidence=IEA

GO:0045252 "oxoglutarate dehydrogenase complex" evidence=IEA

UNIPROTKB|B7Z5W8 DLST "cDNA FLJ55034, highly similar to Dihydrolipoyllysine-residue succinyltransferase component of 2- oxoglutarate dehydrogenase complex, mitochondrial (EC 2.3.1.61)" [Homo sapiens (taxid:9606)]

 Score = 656 (236.0 bits), Expect = 1.1e-66, Sum P(2) = 1.1e-66
 Identities = 158/251 (62%), Positives = 173/251 (68%)

Query:    87 TVKLPPADPTKEISGTRSEQRVKMNRMRQRIAQRLKEAQNVNAMLTTFNEIDMSAIIEFR 146
             TV  P A+P     G RSE R KMNRMRQRIAQRLKEAQN  AMLTTFNEIDMS I E R
Sbjct:   119 TVAPPLAEPGAG-KGLRSEHREKMNRMRQRIAQRLKEAQNTCAMLTTFNEIDMSNIQEMR 177

Query:   147 KAHLEAFQKKYGLKLGFMSPFIKASAYALQDQPVVNAVIEGTDIVYRDYVD-ISVGMGRN 205
               H EAF KK+ LKLGFMS F+KASA+ALQ+QPVVNAVI+ T      Y D I + +   
Sbjct:   178 ARHKEAFLKKHNLKLGFMSAFVKASAFALQEQPVVNAVIDDTTKEVV-YRDYIDISVA-- 234

Query:   206 ESNLPRWCFNGLLSGVLVLTEHLNGKYCVSSRPSYERHTTGWACYDRLNWNLAIEDSDGG 265
                 PR    GL+  V+   E +N           ER  T      R N  LAIED DGG
Sbjct:   235 -VATPR----GLVVPVIRNVEAMNFA-------DIERTITELGEKARKN-ELAIEDMDGG 281

Query:   266 TFTISNGGVFGSLLGTPIINPPQSAILGMHGTFERPVAIKGQVVVKPMMYVALTYDHRLI 325
             TFTISNGGVFGSL GTPIINPPQSAILGMHG F+RPVAI G+V V+PMMYVALTYDHRLI
Sbjct:   282 TFTISNGGVFGSLFGTPIINPPQSAILGMHGIFDRPVAIGGKVEVRPMMYVALTYDHRLI 341

Query:   326 DGREAVLFLQK 336
             DGREAV FL+K
Sbjct:   342 DGREAVTFLRK 352

GO:0004149 "dihydrolipoyllysine-residue succinyltransferase activity" evidence=IEA

GO:0006099 "tricarboxylic acid cycle" evidence=IEA

GO:0045252 "oxoglutarate dehydrogenase complex" evidence=IEA

GO:0005634 "nucleus" evidence=IDA

GO:0005737 "cytoplasm" evidence=IDA

GO:0005739 "mitochondrion" evidence=IDA

GO:0043231 "intracellular membrane-bounded organelle" evidence=IDA

UNIPROTKB|P36957 DLST "Dihydrolipoyllysine-residue succinyltransferase component of 2-oxoglutarate dehydrogenase complex, mitochondrial" [Homo sapiens (taxid:9606)]

 Score = 656 (236.0 bits), Expect = 1.1e-66, Sum P(2) = 1.1e-66
 Identities = 158/251 (62%), Positives = 173/251 (68%)

Query:    87 TVKLPPADPTKEISGTRSEQRVKMNRMRQRIAQRLKEAQNVNAMLTTFNEIDMSAIIEFR 146
             TV  P A+P     G RSE R KMNRMRQRIAQRLKEAQN  AMLTTFNEIDMS I E R
Sbjct:   205 TVAPPLAEPGAG-KGLRSEHREKMNRMRQRIAQRLKEAQNTCAMLTTFNEIDMSNIQEMR 263

Query:   147 KAHLEAFQKKYGLKLGFMSPFIKASAYALQDQPVVNAVIEGTDIVYRDYVD-ISVGMGRN 205
               H EAF KK+ LKLGFMS F+KASA+ALQ+QPVVNAVI+ T      Y D I + +   
Sbjct:   264 ARHKEAFLKKHNLKLGFMSAFVKASAFALQEQPVVNAVIDDTTKEVV-YRDYIDISVA-- 320

Query:   206 ESNLPRWCFNGLLSGVLVLTEHLNGKYCVSSRPSYERHTTGWACYDRLNWNLAIEDSDGG 265
                 PR    GL+  V+   E +N           ER  T      R N  LAIED DGG
Sbjct:   321 -VATPR----GLVVPVIRNVEAMNFA-------DIERTITELGEKARKN-ELAIEDMDGG 367

Query:   266 TFTISNGGVFGSLLGTPIINPPQSAILGMHGTFERPVAIKGQVVVKPMMYVALTYDHRLI 325
             TFTISNGGVFGSL GTPIINPPQSAILGMHG F+RPVAI G+V V+PMMYVALTYDHRLI
Sbjct:   368 TFTISNGGVFGSLFGTPIINPPQSAILGMHGIFDRPVAIGGKVEVRPMMYVALTYDHRLI 427

Query:   326 DGREAVLFLQK 336
             DGREAV FL+K
Sbjct:   428 DGREAVTFLRK 438

GO:0045252 "oxoglutarate dehydrogenase complex" evidence=IEA

GO:0004149 "dihydrolipoyllysine-residue succinyltransferase activity" evidence=IEA

GO:0033512 "L-lysine catabolic process to acetyl-CoA via saccharopine" evidence=IEA

GO:0006091 "generation of precursor metabolites and energy" evidence=TAS

GO:0005759 "mitochondrial matrix" evidence=TAS

GO:0006099 "tricarboxylic acid cycle" evidence=TAS

GO:0006554 "lysine catabolic process" evidence=TAS

GO:0034641 "cellular nitrogen compound metabolic process" evidence=TAS

GO:0044281 "small molecule metabolic process" evidence=TAS

GO:0005634 "nucleus" evidence=IDA

GO:0005737 "cytoplasm" evidence=IDA

GO:0005739 "mitochondrion" evidence=IDA

GO:0043231 "intracellular membrane-bounded organelle" evidence=IDA

RGD|1359615 Dlst "dihydrolipoamide S-succinyltransferase (E2 component of 2-oxo-glutarate complex)" [Rattus norvegicus (taxid:10116)]

 Score = 647 (232.8 bits), Expect = 1.6e-65, Sum P(2) = 1.6e-65
 Identities = 153/248 (61%), Positives = 170/248 (68%)

Query:    91 PPADPTKEISGTRSEQRVKMNRMRQRIAQRLKEAQNVNAMLTTFNEIDMSAIIEFRKAHL 150
             PP        G RSE R KMNRMRQRIAQRLKEAQN  AMLTTFNE+DMS I E R  H 
Sbjct:   209 PPLAEAGAAKGLRSEHREKMNRMRQRIAQRLKEAQNTCAMLTTFNEVDMSNIQEMRARHK 268

Query:   151 EAFQKKYGLKLGFMSPFIKASAYALQDQPVVNAVIE-GTDIVYRDYVD-ISVGMGRNESN 208
             +AF KK+ LKLGFMS F+KASA+ALQ+QPVVNAVI+  T  V   Y D I + +      
Sbjct:   269 DAFLKKHNLKLGFMSAFVKASAFALQEQPVVNAVIDDATKEVV--YRDYIDISVA---VA 323

Query:   209 LPRWCFNGLLSGVLVLTEHLNGKYCVSSRPSYERHTTGWACYDRLNWNLAIEDSDGGTFT 268
              PR    GL+  V+   E +N  Y    R   E          R N  LAIED DGGTFT
Sbjct:   324 TPR----GLVVPVIRNVETMN--YADIERTINELGEKA-----RKN-ELAIEDMDGGTFT 371

Query:   269 ISNGGVFGSLLGTPIINPPQSAILGMHGTFERPVAIKGQVVVKPMMYVALTYDHRLIDGR 328
             ISNGGVFGSL GTPIINPPQSAILGMHG F+RPVA+ G+V V+PMMYVALTYDHRLIDGR
Sbjct:   372 ISNGGVFGSLFGTPIINPPQSAILGMHGIFDRPVAVGGKVEVRPMMYVALTYDHRLIDGR 431

Query:   329 EAVLFLQK 336
             EAV FL+K
Sbjct:   432 EAVTFLRK 439

GO:0004149 "dihydrolipoyllysine-residue succinyltransferase activity" evidence=IDA

GO:0005634 "nucleus" evidence=ISO

GO:0005737 "cytoplasm" evidence=ISO

GO:0005739 "mitochondrion" evidence=ISO;IDA

GO:0005886 "plasma membrane" evidence=IDA

GO:0006099 "tricarboxylic acid cycle" evidence=IC

GO:0006103 "2-oxoglutarate metabolic process" evidence=IDA

GO:0006734 "NADH metabolic process" evidence=IDA

GO:0031072 "heat shock protein binding" evidence=IPI

GO:0033512 "L-lysine catabolic process to acetyl-CoA via saccharopine" evidence=IEA

GO:0043231 "intracellular membrane-bounded organelle" evidence=ISO;IDA

GO:0045252 "oxoglutarate dehydrogenase complex" evidence=IDA

GO:0051087 "chaperone binding" evidence=IPI

UNIPROTKB|G3V6P2 Dlst "Dihydrolipoyllysine-residue succinyltransferase component of 2-oxoglutarate dehydrogenase complex, mitochondrial" [Rattus norvegicus (taxid:10116)]

 Score = 647 (232.8 bits), Expect = 1.6e-65, Sum P(2) = 1.6e-65
 Identities = 153/248 (61%), Positives = 170/248 (68%)

Query:    91 PPADPTKEISGTRSEQRVKMNRMRQRIAQRLKEAQNVNAMLTTFNEIDMSAIIEFRKAHL 150
             PP        G RSE R KMNRMRQRIAQRLKEAQN  AMLTTFNE+DMS I E R  H 
Sbjct:   209 PPLAEAGAAKGLRSEHREKMNRMRQRIAQRLKEAQNTCAMLTTFNEVDMSNIQEMRARHK 268

Query:   151 EAFQKKYGLKLGFMSPFIKASAYALQDQPVVNAVIE-GTDIVYRDYVD-ISVGMGRNESN 208
             +AF KK+ LKLGFMS F+KASA+ALQ+QPVVNAVI+  T  V   Y D I + +      
Sbjct:   269 DAFLKKHNLKLGFMSAFVKASAFALQEQPVVNAVIDDATKEVV--YRDYIDISVA---VA 323

Query:   209 LPRWCFNGLLSGVLVLTEHLNGKYCVSSRPSYERHTTGWACYDRLNWNLAIEDSDGGTFT 268
              PR    GL+  V+   E +N  Y    R   E          R N  LAIED DGGTFT
Sbjct:   324 TPR----GLVVPVIRNVETMN--YADIERTINELGEKA-----RKN-ELAIEDMDGGTFT 371

Query:   269 ISNGGVFGSLLGTPIINPPQSAILGMHGTFERPVAIKGQVVVKPMMYVALTYDHRLIDGR 328
             ISNGGVFGSL GTPIINPPQSAILGMHG F+RPVA+ G+V V+PMMYVALTYDHRLIDGR
Sbjct:   372 ISNGGVFGSLFGTPIINPPQSAILGMHGIFDRPVAVGGKVEVRPMMYVALTYDHRLIDGR 431

Query:   329 EAVLFLQK 336
             EAV FL+K
Sbjct:   432 EAVTFLRK 439

GO:0004149 "dihydrolipoyllysine-residue succinyltransferase activity" evidence=IEA

GO:0005634 "nucleus" evidence=IEA

GO:0005739 "mitochondrion" evidence=IEA

GO:0006099 "tricarboxylic acid cycle" evidence=IEA

GO:0045252 "oxoglutarate dehydrogenase complex" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q01205	ODO2_RAT	2, ., 3, ., 1, ., 6, 1	0.6330	0.5313	0.5044	yes	N/A
P19262	ODO2_YEAST	2, ., 3, ., 1, ., 6, 1	0.4528	0.6844	0.6371	yes	N/A
P36957	ODO2_HUMAN	2, ., 3, ., 1, ., 6, 1	0.6507	0.5382	0.5121	yes	N/A
Q9N0F1	ODO2_PIG	2, ., 3, ., 1, ., 6, 1	0.625	0.5313	0.5032	yes	N/A
Q9D2G2	ODO2_MOUSE	2, ., 3, ., 1, ., 6, 1	0.6290	0.5313	0.5044	yes	N/A
P11179	ODO2_BOVIN	2, ., 3, ., 1, ., 6, 1	0.6133	0.5707	0.5406	yes	N/A
Q68XI8	ODO2_RICTY	2, ., 3, ., 1, ., 6, 1	0.3918	0.7030	0.7613	yes	N/A
Q9I3D2	ODO2_PSEAE	2, ., 3, ., 1, ., 6, 1	0.5105	0.4988	0.5256	yes	N/A
P45302	ODO2_HAEIN	2, ., 3, ., 1, ., 6, 1	0.5344	0.4988	0.5256	yes	N/A
Q9FLQ4	ODO2A_ARATH	2, ., 3, ., 1, ., 6, 1	0.5040	0.5150	0.4784	yes	N/A
Q869Y7	ODO2_DICDI	2, ., 3, ., 1, ., 6, 1	0.5695	0.4941	0.4851	yes	N/A

EC Number Prediction by EFICAz Software

Prediction Level	EC number	Confidence of Prediction
3rd Layer	2.3.1	0.766

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database

ID	Length	Definition	E-value
Query	431
PTZ00144	418	PTZ00144, PTZ00144, dihydrolipoamide succinyltrans	1e-117
TIGR01347	403	TIGR01347, sucB, 2-oxoglutarate dehydrogenase comp	1e-110
PRK05704	407	PRK05704, PRK05704, dihydrolipoamide succinyltrans	1e-110
PLN02226	463	PLN02226, PLN02226, 2-oxoglutarate dehydrogenase E	4e-76
COG0508	404	COG0508, AceF, Pyruvate/2-oxoglutarate dehydrogena	2e-64
pfam00198	212	pfam00198, 2-oxoacid_dh, 2-oxoacid dehydrogenases	9e-54
PRK11856	411	PRK11856, PRK11856, branched-chain alpha-keto acid	4e-51
PTZ00144	418	PTZ00144, PTZ00144, dihydrolipoamide succinyltrans	3e-47
TIGR01347	403	TIGR01347, sucB, 2-oxoglutarate dehydrogenase comp	7e-45
PRK05704	407	PRK05704, PRK05704, dihydrolipoamide succinyltrans	1e-42
TIGR02927	579	TIGR02927, SucB_Actino, 2-oxoglutarate dehydrogena	4e-38
PRK11855	547	PRK11855, PRK11855, dihydrolipoamide acetyltransfe	2e-35
PRK14843	347	PRK14843, PRK14843, dihydrolipoamide acetyltransfe	1e-31
PLN02226	463	PLN02226, PLN02226, 2-oxoglutarate dehydrogenase E	3e-31
PRK11854	633	PRK11854, aceF, pyruvate dehydrogenase dihydrolipo	2e-29
pfam00198	212	pfam00198, 2-oxoacid_dh, 2-oxoacid dehydrogenases	2e-28
TIGR01349	436	TIGR01349, PDHac_trf_mito, pyruvate dehydrogenase	1e-26
COG0508	404	COG0508, AceF, Pyruvate/2-oxoglutarate dehydrogena	7e-26
PRK11856	411	PRK11856, PRK11856, branched-chain alpha-keto acid	5e-24
PRK11857	306	PRK11857, PRK11857, dihydrolipoamide acetyltransfe	3e-23
PRK11855	547	PRK11855, PRK11855, dihydrolipoamide acetyltransfe	2e-20
TIGR01348	546	TIGR01348, PDHac_trf_long, pyruvate dehydrogenase	2e-20
PRK11854	633	PRK11854, aceF, pyruvate dehydrogenase dihydrolipo	8e-20
TIGR01349	436	TIGR01349, PDHac_trf_mito, pyruvate dehydrogenase	3e-15
PLN02528	416	PLN02528, PLN02528, 2-oxoisovalerate dehydrogenase	1e-14
TIGR02927	579	TIGR02927, SucB_Actino, 2-oxoglutarate dehydrogena	4e-13
TIGR01348	546	TIGR01348, PDHac_trf_long, pyruvate dehydrogenase	4e-13
PLN02528	416	PLN02528, PLN02528, 2-oxoisovalerate dehydrogenase	4e-13
PLN02744	539	PLN02744, PLN02744, dihydrolipoyllysine-residue ac	4e-12
PRK11857	306	PRK11857, PRK11857, dihydrolipoamide acetyltransfe	2e-10
PLN02744	539	PLN02744, PLN02744, dihydrolipoyllysine-residue ac	2e-06
PRK14843	347	PRK14843, PRK14843, dihydrolipoamide acetyltransfe	3e-04
PRK12270	1228	PRK12270, kgd, alpha-ketoglutarate decarboxylase;	4e-04
PRK12270	1228	PRK12270, kgd, alpha-ketoglutarate decarboxylase;	5e-04

>gnl|CDD|240289 PTZ00144, PTZ00144, dihydrolipoamide succinyltransferase; Provisional

 Score =  348 bits (895), Expect = e-117
 Identities = 143/321 (44%), Positives = 191/321 (59%), Gaps = 25/321 (7%)

Query: 20  EDGATVKAGQQLFKIKPTATSVVDWWSSPEEGSSAQSRGYSS---SSSSSLCCCSSPSPS 76
           E+G TV+ G  L +I           ++     + ++        + +      S P+P 
Sbjct: 104 EEGDTVEVGAPLSEIDTGGAPPAAAPAAAAAAKAEKTTPEKPKAAAPTPEPPAASKPTPP 163

Query: 77  LCYSSAIEAATVKLPPADPTKEISGT-RSEQRVKMNRMRQRIAQRLKEAQNVNAMLTTFN 135
               +A +          P   ++     E RV M+RMRQRIA+RLK +QN  AMLTTFN
Sbjct: 164 ----AAAKPPEPAPAAKPPPTPVARADPRETRVPMSRMRQRIAERLKASQNTCAMLTTFN 219

Query: 136 EIDMSAIIEFRKAHLEAFQKKYGLKLGFMSPFIKASAYALQDQPVVNAVIEGTDIVYRDY 195
           E DMSA++E RK + + FQKK+G+KLGFMS F+KAS  AL+  P+VNA I+G +IVYR+Y
Sbjct: 220 ECDMSALMELRKEYKDDFQKKHGVKLGFMSAFVKASTIALKKMPIVNAYIDGDEIVYRNY 279

Query: 196 VDISVGMGRNESNLPRWCFNGLLSGVLVLTEHLNGKYCVSSRPSYERHTTGWACYDRLNW 255
           VDISV +       P     GL+  V+   E+ +           E+     A   R N 
Sbjct: 280 VDISVAVAT-----P----TGLVVPVIRNCENKS-------FAEIEKELADLAEKARNN- 322

Query: 256 NLAIEDSDGGTFTISNGGVFGSLLGTPIINPPQSAILGMHGTFERPVAIKGQVVVKPMMY 315
            L +ED  GGTFTISNGGVFGSL+GTPIINPPQSAILGMH   +RPV +  ++V++P+MY
Sbjct: 323 KLTLEDMTGGTFTISNGGVFGSLMGTPIINPPQSAILGMHAIKKRPVVVGNEIVIRPIMY 382

Query: 316 VALTYDHRLIDGREAVLFLQK 336
           +ALTYDHRLIDGR+AV FL+K
Sbjct: 383 LALTYDHRLIDGRDAVTFLKK 403

Length = 418

>gnl|CDD|233365 TIGR01347, sucB, 2-oxoglutarate dehydrogenase complex dihydrolipoamide succinyltransferase (E2 component)

 Score =  330 bits (849), Expect = e-110
 Identities = 139/265 (52%), Positives = 176/265 (66%), Gaps = 21/265 (7%)

Query: 84  EAATVKLPPADPTKE-ISGTRSEQRVKMNRMRQRIAQRLKEAQNVNAMLTTFNEIDMSAI 142
            A+  +  PA   K   + TR E+RVKM R+RQRIA+RLKEAQN  AMLTTFNE+DMSA+
Sbjct: 152 PASAQQPAPAAAAKAPANFTRPEERVKMTRLRQRIAERLKEAQNSTAMLTTFNEVDMSAV 211

Query: 143 IEFRKAHLEAFQKKYGLKLGFMSPFIKASAYALQDQPVVNAVIEGTDIVYRDYVDISVGM 202
           +E RK + E F+KK+G+KLGFMS F+KA   AL+  P VNA I+G DIVY+DY DISV +
Sbjct: 212 MELRKRYKEEFEKKHGVKLGFMSFFVKAVVAALKRFPEVNAEIDGDDIVYKDYYDISVAV 271

Query: 203 GRNESNLPRWCFNGLLSGVLVLTEHLNGKYCVSSRPSYERHTTGWACYDRLNWNLAIEDS 262
             +          GL+  V+   + ++           E+         R    L +ED 
Sbjct: 272 STDR---------GLVVPVVRNADRMS-------FADIEKEIADLGKKARDG-KLTLEDM 314

Query: 263 DGGTFTISNGGVFGSLLGTPIINPPQSAILGMHGTFERPVAIKGQVVVKPMMYVALTYDH 322
            GGTFTI+NGGVFGSL+ TPIINPPQSAILGMHG  ERPVA+ GQ+ ++PMMY+AL+YDH
Sbjct: 315 TGGTFTITNGGVFGSLMSTPIINPPQSAILGMHGIKERPVAVNGQIEIRPMMYLALSYDH 374

Query: 323 RLIDGREAVLFLQ--KEAHLEAFQK 345
           RLIDG+EAV FL   KE  LE  ++
Sbjct: 375 RLIDGKEAVTFLVTIKEL-LEDPRR 398

This model describes the TCA cycle 2-oxoglutarate system E2 component, dihydrolipoamide succinyltransferase. It is closely related to the pyruvate dehydrogenase E2 component, dihydrolipoamide acetyltransferase. The seed for this model includes mitochondrial and Gram-negative bacterial forms. Mycobacterial candidates are highly derived, differ in having and extra copy of the lipoyl-binding domain at the N-terminus. They score below the trusted cutoff, but above the noise cutoff and above all examples of dihydrolipoamide acetyltransferase [Energy metabolism, TCA cycle]. Length = 403

>gnl|CDD|235571 PRK05704, PRK05704, dihydrolipoamide succinyltransferase; Validated

 Score =  330 bits (848), Expect = e-110
 Identities = 144/363 (39%), Positives = 202/363 (55%), Gaps = 67/363 (18%)

Query: 20  EDGATVKAGQQLFKIKPTATSVVDWWSSPEEGSSAQSRGYSSSSSSSLCCCSSPSPS--- 76
           E+G TV  GQ L +I   A +     ++    ++A +   + +++++     + SP+   
Sbjct: 62  EEGDTVTVGQVLGRIDEGAAAGAAAAAAAAAAAAAAAPAQAQAAAAAEQSNDALSPAARK 121

Query: 77  LCYSSAIEAATVK----------------------------LPPADPTKEISGTRSEQRV 108
           L   + ++A+ VK                                       G R E+RV
Sbjct: 122 LAAENGLDASAVKGTGKGGRVTKEDVLAALAAAAAAPAAPAAAAPAAAPAPLGARPEERV 181

Query: 109 KMNRMRQRIAQRLKEAQNVNAMLTTFNEIDMSAIIEFRKAHLEAFQKKYGLKLGFMSPFI 168
            M R+R+ IA+RL EAQN  AMLTTFNE+DM+ +++ RK + +AF+KK+G+KLGFMS F+
Sbjct: 182 PMTRLRKTIAERLLEAQNTTAMLTTFNEVDMTPVMDLRKQYKDAFEKKHGVKLGFMSFFV 241

Query: 169 KASAYALQDQPVVNAVIEGTDIVYRDYVDISVGMGRNESNLPRWCFNGLLSGVLVLTEHL 228
           KA   AL+  P VNA I+G DIVY +Y DI + +G      PR    GL+  VL   + L
Sbjct: 242 KAVVEALKRYPEVNASIDGDDIVYHNYYDIGIAVGT-----PR----GLVVPVLRDADQL 292

Query: 229 N--------GKYCVSSRPSYERHTTGWACYDRLNWNLAIEDSDGGTFTISNGGVFGSLLG 280
           +         +    +R                +  L+IE+  GGTFTI+NGGVFGSL+ 
Sbjct: 293 SFAEIEKKIAELAKKAR----------------DGKLSIEELTGGTFTITNGGVFGSLMS 336

Query: 281 TPIINPPQSAILGMHGTFERPVAIKGQVVVKPMMYVALTYDHRLIDGREAVLFLQ--KEA 338
           TPIINPPQSAILGMH   ERPVA+ GQ+V++PMMY+AL+YDHR+IDG+EAV FL   KE 
Sbjct: 337 TPIINPPQSAILGMHKIKERPVAVNGQIVIRPMMYLALSYDHRIIDGKEAVGFLVTIKEL 396

Query: 339 HLE 341
            LE
Sbjct: 397 -LE 398

Length = 407

>gnl|CDD|177871 PLN02226, PLN02226, 2-oxoglutarate dehydrogenase E2 component

 Score =  244 bits (623), Expect = 4e-76
 Identities = 137/330 (41%), Positives = 194/330 (58%), Gaps = 43/330 (13%)

Query: 19  LEDGATVKAGQQLFKIKPTATSV------------VDWWSSPEEGSSAQSRGYSSSSSSS 66
           +++G TV+ G ++  I  +  +              D   SP      + +  S+  +  
Sbjct: 150 VKEGDTVEPGTKVAIISKSEDAASQVTPSQKIPETTDPKPSPPAEDKQKPKVESAPVAEK 209

Query: 67  LCCCSSPSPSLCYSSAIEAATVKLPPADPTKEISGTRSEQRVKMNRMRQRIAQRLKEAQN 126
               SSP P     SA E    +LPP +          E+RV M R+R+R+A RLK++QN
Sbjct: 210 PKAPSSPPPP--KQSAKEP---QLPPKE---------RERRVPMTRLRKRVATRLKDSQN 255

Query: 127 VNAMLTTFNEIDMSAIIEFRKAHLEAFQKKYGLKLGFMSPFIKASAYALQDQPVVNAVIE 186
             A+LTTFNE+DM+ +++ R  + +AF +K+G+KLG MS FIKA+  ALQ QPVVNAVI+
Sbjct: 256 TFALLTTFNEVDMTNLMKLRSQYKDAFYEKHGVKLGLMSGFIKAAVSALQHQPVVNAVID 315

Query: 187 GTDIVYRDYVDISVGMGRNESNLPRWCFNGLLSGVLVLTEHLNGKYCVSSRPSYERHTTG 246
           G DI+YRDYVDIS+ +G ++         GL+  V+   + +N      +     +    
Sbjct: 316 GDDIIYRDYVDISIAVGTSK---------GLVVPVIRGADKMNFAEIEKTINGLAKKAN- 365

Query: 247 WACYDRLNWNLAIEDSDGGTFTISNGGVFGSLLGTPIINPPQSAILGMHGTFERPVAIKG 306
                     ++I++  GG+FT+SNGGV+GSL+ TPIINPPQSAILGMH    RP+ + G
Sbjct: 366 -------EGTISIDEMAGGSFTVSNGGVYGSLISTPIINPPQSAILGMHSIVSRPMVVGG 418

Query: 307 QVVVKPMMYVALTYDHRLIDGREAVLFLQK 336
            VV +PMMYVALTYDHRLIDGREAV FL++
Sbjct: 419 SVVPRPMMYVALTYDHRLIDGREAVYFLRR 448

Length = 463

>gnl|CDD|223582 COG0508, AceF, Pyruvate/2-oxoglutarate dehydrogenase complex, dihydrolipoamide acyltransferase (E2) component, and related enzymes [Energy production and conversion]

 Score =  211 bits (540), Expect = 2e-64
 Identities = 105/254 (41%), Positives = 144/254 (56%), Gaps = 20/254 (7%)

Query: 84  EAATVKLPPADPTKEISGTRSEQRVKMNRMRQRIAQRLKEAQNVNAMLTTFNEIDMSAII 143
           +AA    P        S    E+RV M+R+R+ IA+R+ E++     LT FNE+DM+ ++
Sbjct: 154 KAAAAAAPAPAAAAPASAAGEEERVPMSRIRKAIAERMVESKQTIPHLTLFNEVDMTKLM 213

Query: 144 EFRKAHLEAFQKKYGLKLGFMSPFIKASAYALQDQPVVNAVIEGTD--IVYRDYVDISVG 201
             RK   E F+KK G+KL F+S  +KA   AL+  P VNA I+G    IVY  YV+I + 
Sbjct: 214 ALRKKLKEEFEKK-GVKLTFLSFLVKAVVKALKKFPEVNASIDGDGEEIVYHKYVNIGIA 272

Query: 202 MGRNESNLPRWCFNGLLSGVLVLTEHLNGKYCVSSRPSYERHTTGWACYDRLNWNLAIED 261
           +     + PR    GL+  V+      + K         +          R    L  E+
Sbjct: 273 V-----DTPR----GLVVPVIR---DADKKSLAEIAKEIKDLAKKA----RDG-KLTPEE 315

Query: 262 SDGGTFTISNGGVFGSLLGTPIINPPQSAILGMHGTFERPVAIKGQVVVKPMMYVALTYD 321
             GGTFTISN G+FGSL+ TPIINPPQ AILG+    ERPV + G++VV+PMMY++L+YD
Sbjct: 316 MQGGTFTISNLGMFGSLMFTPIINPPQVAILGVGAIEERPVVVGGEIVVRPMMYLSLSYD 375

Query: 322 HRLIDGREAVLFLQ 335
           HR+IDG EA  FL 
Sbjct: 376 HRVIDGAEAARFLV 389

Length = 404

>gnl|CDD|215782 pfam00198, 2-oxoacid_dh, 2-oxoacid dehydrogenases acyltransferase (catalytic domain)

 Score =  178 bits (453), Expect = 9e-54
 Identities = 75/217 (34%), Positives = 118/217 (54%), Gaps = 19/217 (8%)

Query: 121 LKEAQNVNAMLTTFNEIDMSAIIEFRKAHLEAFQKKYGLKLGFMSPFIKASAYALQDQPV 180
           + E++      T  +E+D++A++  R+   E  +K+ GLKL F+   +KA A AL++ P 
Sbjct: 1   MTESKQTIPHFTLTDEVDVTALLALREKLKEDAKKE-GLKLTFLDFLVKAVALALKEFPE 59

Query: 181 VNAVIEGTD-IVYRDYVDISVGMGRNESNLPRWCFNGLLSGVLVLTEHLNGKYCVSSRPS 239
           +NA  +G   IVY+ YV+I + +       P     GL+  V+   +       ++    
Sbjct: 60  LNASWDGDAEIVYKKYVNIGIAV-----ATPD----GLIVPVIRNADRK-SLLEIAKE-- 107

Query: 240 YERHTTGWACYDRLNWNLAIEDSDGGTFTISNGGVFGSLLGTPIINPPQSAILGMHGTFE 299
            +            +  L  ED  GGTFTISN G+FG    TPIINPPQ AILG+    +
Sbjct: 108 IKDLAE-----RARDGKLKPEDLQGGTFTISNLGMFGVTFFTPIINPPQVAILGVGAIRK 162

Query: 300 RPVAIKGQVVVKPMMYVALTYDHRLIDGREAVLFLQK 336
           RPV + G++V++ +M ++L++DHR+IDG EA  FL  
Sbjct: 163 RPVVVDGEIVIRKVMPLSLSFDHRVIDGAEAARFLND 199

These proteins contain one to three copies of a lipoyl binding domain followed by the catalytic domain. Length = 212

>gnl|CDD|237001 PRK11856, PRK11856, branched-chain alpha-keto acid dehydrogenase subunit E2; Reviewed

 Score =  177 bits (451), Expect = 4e-51
 Identities = 86/275 (31%), Positives = 133/275 (48%), Gaps = 58/275 (21%)

Query: 79  YSSAIEAATVKLPPADPTKEISGTRSEQRVKMNRMRQRIAQRLKEA-QNVNAMLTTFNEI 137
            ++A   A      A      +    E+RV ++ MR+ IA+R+ E+ + +    T  +E+
Sbjct: 162 AAAAAAPAAAAAAAAAAAPPAAAAEGEERVPLSGMRKAIAKRMVESKREI-PHFTLTDEV 220

Query: 138 DMSAIIEFRKAHLEAFQKKYGLKLGFMSPFIKASAYALQDQPVVNAVIEGTDIVYRDYVD 197
           D++A++  RK       K  G+KL      IKA A AL+  P +NA  +   IV + YV+
Sbjct: 221 DVTALLALRKQL-----KAIGVKLTVTDFLIKAVALALKKFPELNASWDDDAIVLKKYVN 275

Query: 198 ISVGMGRNESNLPRWCFNGLLSGVLVLTEHLNGKYCVSSRPSYERHTTGWACYDRLN-WN 256
           I + +  +          GL+  V V+                 R        D+ + + 
Sbjct: 276 IGIAVATD---------GGLI--VPVI-----------------RDA------DKKSLFE 301

Query: 257 LAIEDSD----------------GGTFTISNGGVFGSLLGTPIINPPQSAILGMHGTFER 300
           LA E  D                GGTFTISN G+FG    TPIINPP+ AILG+    ER
Sbjct: 302 LAREIKDLAEKAREGKLKPEELQGGTFTISNLGMFGGDYFTPIINPPEVAILGVGAIVER 361

Query: 301 PVAIKGQVVVKPMMYVALTYDHRLIDGREAVLFLQ 335
           PV + G++VV+ +M ++L++DHR+IDG +A  FL+
Sbjct: 362 PVVVDGEIVVRKVMPLSLSFDHRVIDGADAARFLK 396

Length = 411

>gnl|CDD|240289 PTZ00144, PTZ00144, dihydrolipoamide succinyltransferase; Provisional

 Score =  167 bits (424), Expect = 3e-47
 Identities = 60/91 (65%), Positives = 72/91 (79%)

Query: 341 EAFQKKYGLKLGFMSPFIKASAYALQDQPVVNAVIEGTDIVYRDYVDISVAVATPKGLVV 400
           + FQKK+G+KLGFMS F+KAS  AL+  P+VNA I+G +IVYR+YVDISVAVATP GLVV
Sbjct: 235 DDFQKKHGVKLGFMSAFVKASTIALKKMPIVNAYIDGDEIVYRNYVDISVAVATPTGLVV 294

Query: 401 PVIRNVEAMNFADIELTIAALGEKARTGKYT 431
           PVIRN E  +FA+IE  +A L EKAR  K T
Sbjct: 295 PVIRNCENKSFAEIEKELADLAEKARNNKLT 325

Length = 418

>gnl|CDD|233365 TIGR01347, sucB, 2-oxoglutarate dehydrogenase complex dihydrolipoamide succinyltransferase (E2 component)

 Score =  160 bits (406), Expect = 7e-45
 Identities = 63/102 (61%), Positives = 79/102 (77%), Gaps = 1/102 (0%)

Query: 330 AVLFLQKEAHLEAFQKKYGLKLGFMSPFIKASAYALQDQPVVNAVIEGTDIVYRDYVDIS 389
           AV+ L+K  + E F+KK+G+KLGFMS F+KA   AL+  P VNA I+G DIVY+DY DIS
Sbjct: 210 AVMELRKR-YKEEFEKKHGVKLGFMSFFVKAVVAALKRFPEVNAEIDGDDIVYKDYYDIS 268

Query: 390 VAVATPKGLVVPVIRNVEAMNFADIELTIAALGEKARTGKYT 431
           VAV+T +GLVVPV+RN + M+FADIE  IA LG+KAR GK T
Sbjct: 269 VAVSTDRGLVVPVVRNADRMSFADIEKEIADLGKKARDGKLT 310

This model describes the TCA cycle 2-oxoglutarate system E2 component, dihydrolipoamide succinyltransferase. It is closely related to the pyruvate dehydrogenase E2 component, dihydrolipoamide acetyltransferase. The seed for this model includes mitochondrial and Gram-negative bacterial forms. Mycobacterial candidates are highly derived, differ in having and extra copy of the lipoyl-binding domain at the N-terminus. They score below the trusted cutoff, but above the noise cutoff and above all examples of dihydrolipoamide acetyltransferase [Energy metabolism, TCA cycle]. Length = 403

>gnl|CDD|235571 PRK05704, PRK05704, dihydrolipoamide succinyltransferase; Validated

 Score =  154 bits (392), Expect = 1e-42
 Identities = 52/89 (58%), Positives = 69/89 (77%)

Query: 341 EAFQKKYGLKLGFMSPFIKASAYALQDQPVVNAVIEGTDIVYRDYVDISVAVATPKGLVV 400
           +AF+KK+G+KLGFMS F+KA   AL+  P VNA I+G DIVY +Y DI +AV TP+GLVV
Sbjct: 224 DAFEKKHGVKLGFMSFFVKAVVEALKRYPEVNASIDGDDIVYHNYYDIGIAVGTPRGLVV 283

Query: 401 PVIRNVEAMNFADIELTIAALGEKARTGK 429
           PV+R+ + ++FA+IE  IA L +KAR GK
Sbjct: 284 PVLRDADQLSFAEIEKKIAELAKKARDGK 312

Length = 407

>gnl|CDD|200219 TIGR02927, SucB_Actino, 2-oxoglutarate dehydrogenase, E2 component, dihydrolipoamide succinyltransferase

 Score =  145 bits (366), Expect = 4e-38
 Identities = 88/271 (32%), Positives = 134/271 (49%), Gaps = 31/271 (11%)

Query: 71  SSPSPSLCYSSAIEAATVKLPPADPTKEISGTRSEQRVKMNRMRQRIAQRLKEAQNVNAM 130
           ++P+ +   ++   AA    P    T ++ GT      KMNR+RQ  A +  E+   +A 
Sbjct: 315 AAPAAAAAPAAPAAAAK---PAEPDTAKLRGTTQ----KMNRIRQITADKTIESLQTSAQ 367

Query: 131 LTTFNEIDMSAIIEFRKAHLEAFQKKYGLKLGFMSPFIKASAYALQDQPVVNAVI--EGT 188
           LT  +E+DM+ +   R      F +K G+ L F+  F++A   AL+  P VNA    E  
Sbjct: 368 LTQVHEVDMTRVAALRARAKNDFLEKNGVNLTFLPFFVQAVTEALKAHPNVNASYNAETK 427

Query: 189 DIVYRDYVDISVGMGRNESNLPRWCFNGLLSGVLVLTEHLNGKYCVSSRPSYERHTTGWA 248
           ++ Y D   + + +     + PR    GLL  V+     L+        P   +     A
Sbjct: 428 EVTYHDVEHVGIAV-----DTPR----GLLVPVIHNAGDLS-------LPGLAKAINDLA 471

Query: 249 CYDRLNWNLAIEDSDGGTFTISNGGVFGSLLGTPIINPPQSAILGMHGTFERPVAIKGQ- 307
              R N  L  ++  GGTFTI+N G  G+L  TPI+NPPQ+AILG     +RP  IK + 
Sbjct: 472 ARARDN-KLKPDELSGGTFTITNIGSGGALFDTPILNPPQAAILGTGAIVKRPRVIKDED 530

Query: 308 ----VVVKPMMYVALTYDHRLIDGREAVLFL 334
               + ++ + Y+ LTYDHRL+DG +A  FL
Sbjct: 531 GGESIAIRSVCYLPLTYDHRLVDGADAGRFL 561

This model represents an Actinobacterial clade of E2 enzyme, a component of the 2-oxoglutarate dehydrogenase complex involved in the TCA cycle. These proteins have multiple domains including the catalytic domain (pfam00198), one or two biotin domains (pfam00364) and an E3-component binding domain (pfam02817). Length = 579

>gnl|CDD|237000 PRK11855, PRK11855, dihydrolipoamide acetyltransferase; Reviewed

 Score =  137 bits (347), Expect = 2e-35
 Identities = 75/283 (26%), Positives = 125/283 (44%), Gaps = 55/283 (19%)

Query: 71  SSPSPSLCYSSAIEAATVKLPPADPTKEISGTRSEQRVKMNRMRQRIAQRLKEAQNVNAM 130
           S+ + +   ++A     + L P  P  + S     +   ++R+++  A  L  +      
Sbjct: 286 SAAAAAAAAAAAAGGGGLGLLPW-PKVDFSKFGEIETKPLSRIKKISAANLHRSWVTIPH 344

Query: 131 LTTFNEIDMSAIIEFRKAHLEAFQKKYGLKLGFMSPFIKASAYALQDQPVVNAVI--EGT 188
           +T F+E D++ +   RK   +  +K  G+KL  +  FIKA   AL++ PV NA +  +G 
Sbjct: 345 VTQFDEADITDLEALRKQLKKEAEKA-GVKLTMLPFFIKAVVAALKEFPVFNASLDEDGD 403

Query: 189 DIVYRDYVDISVGMGRNESNLPRWCFNGLLS---------GVLVLTEHL--------NGK 231
           ++ Y+ Y +I  G      + P    NGL+           +L +   +        +GK
Sbjct: 404 ELTYKKYFNI--GFA---VDTP----NGLVVPVIKDVDKKSLLEIAREIAELAKKARDGK 454

Query: 232 YCVSSRPSYERHTTGWACYDRLNWNLAIEDSDGGTFTISNGGVFGSLLGTPIINPPQSAI 291
                                    L  +D  GG FTIS+ G  G    TPIIN P+ AI
Sbjct: 455 -------------------------LKPDDMQGGCFTISSLGGIGGTAFTPIINAPEVAI 489

Query: 292 LGMHGTFERPVAIKGQVVVKPMMYVALTYDHRLIDGREAVLFL 334
           LG+  +  +PV    + V + M+ ++L+YDHR+IDG  A  F 
Sbjct: 490 LGVGKSQMKPVWDGKEFVPRLMLPLSLSYDHRVIDGATAARFT 532

Length = 547

>gnl|CDD|184847 PRK14843, PRK14843, dihydrolipoamide acetyltransferase; Provisional

 Score =  123 bits (309), Expect = 1e-31
 Identities = 81/264 (30%), Positives = 126/264 (47%), Gaps = 25/264 (9%)

Query: 74  SPSLCYSSAIEAATVKLPPADPTKEISGTRSEQRVKMNRMRQRIAQRLKEAQNVNAMLTT 133
           + S+   + IE          P  EI      +R+ M  MR+ IAQR+ E+       T 
Sbjct: 93  NDSIKSPAQIEKVEEVPDNVTPYGEI------ERIPMTPMRKVIAQRMVESYLTAPTFTL 146

Query: 134 FNEIDMSAIIEFRKAHLEAFQKKYGLKLGFMSPFIKASAYALQDQPVVNAVI--EGTDIV 191
             E+DM+ ++  RK  LE   +  G K         A    L   P +NA +  +G  I+
Sbjct: 147 NYEVDMTEMLALRKKVLEPIMEATGKKTTVTDLLSLAVVKTLMKHPYINASLTEDGKTII 206

Query: 192 YRDYVDISVGMGRNESNLPRWCFNGLLSGVLVLTEHLNGKYCVSSRPSYERHTTGWACYD 251
             +YV++++ +G +         NGL++ V+   E    K  +S      +   G     
Sbjct: 207 THNYVNLAMAVGMD---------NGLMTPVVYNAE----KMSLSELVVAFKDVIGRT--- 250

Query: 252 RLNWNLAIEDSDGGTFTISNGGVFGSLLGTPIINPPQSAILGMHGTFERPVAIKGQVVVK 311
            L+  LA  +    TFTISN G+FG     PIIN P SAILG+  T E+PV + G++V++
Sbjct: 251 -LDGKLAPSELQNSTFTISNLGMFGVQSFGPIINQPNSAILGVSSTIEKPVVVNGEIVIR 309

Query: 312 PMMYVALTYDHRLIDGREAVLFLQ 335
           P+M + LT DHR++DG     F++
Sbjct: 310 PIMSLGLTIDHRVVDGMAGAKFMK 333

Length = 347

>gnl|CDD|177871 PLN02226, PLN02226, 2-oxoglutarate dehydrogenase E2 component

 Score =  124 bits (312), Expect = 3e-31
 Identities = 59/88 (67%), Positives = 70/88 (79%)

Query: 341 EAFQKKYGLKLGFMSPFIKASAYALQDQPVVNAVIEGTDIVYRDYVDISVAVATPKGLVV 400
           +AF +K+G+KLG MS FIKA+  ALQ QPVVNAVI+G DI+YRDYVDIS+AV T KGLVV
Sbjct: 280 DAFYEKHGVKLGLMSGFIKAAVSALQHQPVVNAVIDGDDIIYRDYVDISIAVGTSKGLVV 339

Query: 401 PVIRNVEAMNFADIELTIAALGEKARTG 428
           PVIR  + MNFA+IE TI  L +KA  G
Sbjct: 340 PVIRGADKMNFAEIEKTINGLAKKANEG 367

Length = 463

>gnl|CDD|236999 PRK11854, aceF, pyruvate dehydrogenase dihydrolipoyltransacetylase; Validated

 Score =  120 bits (304), Expect = 2e-29
 Identities = 70/247 (28%), Positives = 120/247 (48%), Gaps = 24/247 (9%)

Query: 91  PPADPTKEISGTRSEQRVKMNRMRQRIAQRLKEAQNVNAMLTTFNEIDMSAIIEFRKA-H 149
           P  D +K   G   E  V++ R+++     L     +   +T F++ D++ +  FRK  +
Sbjct: 393 PKVDFSK--FGEIEE--VELGRIQKISGANLHRNWVMIPHVTQFDKADITELEAFRKQQN 448

Query: 150 LEAFQKKYGLKLGFMSPFIKASAYALQDQPVVNAVI--EGTDIVYRDYVDISVGMGRNES 207
            EA ++K G+K+  +   +KA A AL+  P  N+ +  +G  +  + YV+I + +     
Sbjct: 449 AEAEKRKLGVKITPLVFIMKAVAAALEQMPRFNSSLSEDGQRLTLKKYVNIGIAV----- 503

Query: 208 NLPRWCFNGLLSGVLVLTEHLNGKYCVSSRPSYERHTTGWACYDRLNWNLAIEDSDGGTF 267
           + P    NGL+  V    + +N K          R     +   R +  L   D  GG F
Sbjct: 504 DTP----NGLVVPVF---KDVNKK----GIIELSRELMDISKKAR-DGKLTAGDMQGGCF 551

Query: 268 TISNGGVFGSLLGTPIINPPQSAILGMHGTFERPVAIKGQVVVKPMMYVALTYDHRLIDG 327
           TIS+ G  G+   TPI+N P+ AILG+  +   PV    +   + M+ ++L+YDHR+IDG
Sbjct: 552 TISSIGGLGTTHFTPIVNAPEVAILGVSKSAMEPVWNGKEFAPRLMLPLSLSYDHRVIDG 611

Query: 328 REAVLFL 334
            +   F+
Sbjct: 612 ADGARFI 618

Length = 633

>gnl|CDD|215782 pfam00198, 2-oxoacid_dh, 2-oxoacid dehydrogenases acyltransferase (catalytic domain)

 Score =  111 bits (279), Expect = 2e-28
 Identities = 43/86 (50%), Positives = 57/86 (66%), Gaps = 1/86 (1%)

Query: 345 KKYGLKLGFMSPFIKASAYALQDQPVVNAVIEGTD-IVYRDYVDISVAVATPKGLVVPVI 403
           KK GLKL F+   +KA A AL++ P +NA  +G   IVY+ YV+I +AVATP GL+VPVI
Sbjct: 34  KKEGLKLTFLDFLVKAVALALKEFPELNASWDGDAEIVYKKYVNIGIAVATPDGLIVPVI 93

Query: 404 RNVEAMNFADIELTIAALGEKARTGK 429
           RN +  +  +I   I  L E+AR GK
Sbjct: 94  RNADRKSLLEIAKEIKDLAERARDGK 119

These proteins contain one to three copies of a lipoyl binding domain followed by the catalytic domain. Length = 212

>gnl|CDD|233367 TIGR01349, PDHac_trf_mito, pyruvate dehydrogenase complex dihydrolipoamide acetyltransferase, long form

 Score =  111 bits (278), Expect = 1e-26
 Identities = 79/263 (30%), Positives = 112/263 (42%), Gaps = 22/263 (8%)

Query: 75  PSLCYSSAIEAATVKLPPADPTKEISGTRSEQRVKMNRMRQRIAQRLKEAQNVNAMLTTF 134
                +SA + A    P   P      T S + V ++ +R+ IA+RL E++         
Sbjct: 178 VPQSPASANQQAAATTPATYPAAAPVSTGSYEDVPLSNIRKIIAKRLLESKQTIPHYYVS 237

Query: 135 NEIDMSAIIEFRKAHLEAFQKKYGLKLGFMSPFIKASAYALQDQPVVNAVIEGTDIVYRD 194
            E ++  ++  RK       + Y  KL      IKASA AL++ P  N+      I    
Sbjct: 238 IECNVDKLLALRKELNAMASEVY--KLSVNDFIIKASALALREVPEANSSWTDNFIRRYK 295

Query: 195 YVDISVGMGRNESNLPRWCFNGLLSGVLVLTEHLNGKYCVSSRPSYERHTTGWACYDRLN 254
            VDISV +       P    +GL++ + V      G   +S            A   R N
Sbjct: 296 NVDISVAV-----ATP----DGLITPI-VRNADAKGLSTIS------NEIKDLAKRARNN 339

Query: 255 WNLAIEDSDGGTFTISNGGVFGSLLGTPIINPPQSAILGMHGTFERPVAIKGQ---VVVK 311
             L  E+  GGTFTISN G+FG    T IINPPQ+ IL +    +  V    +     V 
Sbjct: 340 -KLKPEEFQGGTFTISNLGMFGIKDFTAIINPPQACILAVGAVEDVAVVDNDEEKGFAVA 398

Query: 312 PMMYVALTYDHRLIDGREAVLFL 334
            +M V L+ DHR+IDG     FL
Sbjct: 399 SIMSVTLSCDHRVIDGAVGAEFL 421

This model represents one of several closely related clades of the dihydrolipoamide acetyltransferase subunit of the pyruvate dehydrogenase complex. It includes sequences from mitochondria and from alpha and beta branches of the proteobacteria, as well as from some other bacteria. Sequences from Gram-positive bacteria are not included. The non-enzymatic homolog protein X, which serves as an E3 component binding protein, falls within the clade phylogenetically but is rejected by its low score [Energy metabolism, Pyruvate dehydrogenase]. Length = 436

>gnl|CDD|223582 COG0508, AceF, Pyruvate/2-oxoglutarate dehydrogenase complex, dihydrolipoamide acyltransferase (E2) component, and related enzymes [Energy production and conversion]

 Score =  107 bits (270), Expect = 7e-26
 Identities = 46/99 (46%), Positives = 60/99 (60%), Gaps = 9/99 (9%)

Query: 340 LEAFQKKY-------GLKLGFMSPFIKASAYALQDQPVVNAVIEGTD--IVYRDYVDISV 390
           L A +KK        G+KL F+S  +KA   AL+  P VNA I+G    IVY  YV+I +
Sbjct: 212 LMALRKKLKEEFEKKGVKLTFLSFLVKAVVKALKKFPEVNASIDGDGEEIVYHKYVNIGI 271

Query: 391 AVATPKGLVVPVIRNVEAMNFADIELTIAALGEKARTGK 429
           AV TP+GLVVPVIR+ +  + A+I   I  L +KAR GK
Sbjct: 272 AVDTPRGLVVPVIRDADKKSLAEIAKEIKDLAKKARDGK 310

Length = 404

>gnl|CDD|237001 PRK11856, PRK11856, branched-chain alpha-keto acid dehydrogenase subunit E2; Reviewed

 Score =  102 bits (258), Expect = 5e-24
 Identities = 38/93 (40%), Positives = 53/93 (56%), Gaps = 3/93 (3%)

Query: 340 LEAFQKKYG---LKLGFMSPFIKASAYALQDQPVVNAVIEGTDIVYRDYVDISVAVATPK 396
           L A +K+     +KL      IKA A AL+  P +NA  +   IV + YV+I +AVAT  
Sbjct: 225 LLALRKQLKAIGVKLTVTDFLIKAVALALKKFPELNASWDDDAIVLKKYVNIGIAVATDG 284

Query: 397 GLVVPVIRNVEAMNFADIELTIAALGEKARTGK 429
           GL+VPVIR+ +  +  ++   I  L EKAR GK
Sbjct: 285 GLIVPVIRDADKKSLFELAREIKDLAEKAREGK 317

Length = 411

>gnl|CDD|237002 PRK11857, PRK11857, dihydrolipoamide acetyltransferase; Reviewed

 Score = 98.7 bits (246), Expect = 3e-23
 Identities = 68/268 (25%), Positives = 123/268 (45%), Gaps = 22/268 (8%)

Query: 71  SSPSPSLCYSSAIEAATVKLPPADPTKEISGTRSEQRVKMNRMRQRIAQRLKEAQNVNAM 130
           S+P+P+   S +      K             + E   K+  +R+ IA+ +  + +  A 
Sbjct: 45  SAPTPAEAASVSSAQQAAKTAAPAAAPPKLEGKRE---KVAPIRKAIARAMTNSWSNVAY 101

Query: 131 LTTFNEIDMSAIIEFRKAHLEAFQKKYGLKLGFMSPFIKASAYALQDQPVVNAVIE--GT 188
           +   NEIDM+ + + RK+  +   K  G+KL F+    KA   AL++ P+  A  +   +
Sbjct: 102 VNLVNEIDMTKLWDLRKSVKDPVLKTEGVKLTFLPFIAKAILIALKEFPIFAAKYDEATS 161

Query: 189 DIVYRDYVDISVGMGRNESNLPRWCFNGLLSGVLVLTEHLNGKYCVSSRPSYERHTTGWA 248
           ++VY D +++ + +             GL+  V+   + L+         + E      A
Sbjct: 162 ELVYPDTLNLGIAVDTEA---------GLMVPVIKNAQKLS-----IVEIAKEISRLAKA 207

Query: 249 CYDRLNWNLAIEDSDGGTFTISNGGVFGSLLGTPIINPPQSAILGMHGTFERPVAIKGQV 308
             +R    +  ++  GG+FTI+N G  GSL G P+IN P+ AI G+    ++ +   GQ+
Sbjct: 208 ARER---KIKPDEMKGGSFTITNYGSVGSLYGVPVINYPELAIAGVGAIIDKAIVKNGQI 264

Query: 309 VVKPMMYVALTYDHRLIDGREAVLFLQK 336
           V   +M++ +  DHR IDG     F  +
Sbjct: 265 VAGKVMHLTVAADHRWIDGATIGRFASR 292

Length = 306

>gnl|CDD|237000 PRK11855, PRK11855, dihydrolipoamide acetyltransferase; Reviewed

 Score = 93.0 bits (232), Expect = 2e-20
 Identities = 41/98 (41%), Positives = 60/98 (61%), Gaps = 5/98 (5%)

Query: 337 EAHLEAFQKKY---GLKLGFMSPFIKASAYALQDQPVVNAVI--EGTDIVYRDYVDISVA 391
           EA  +  +K+    G+KL  +  FIKA   AL++ PV NA +  +G ++ Y+ Y +I  A
Sbjct: 357 EALRKQLKKEAEKAGVKLTMLPFFIKAVVAALKEFPVFNASLDEDGDELTYKKYFNIGFA 416

Query: 392 VATPKGLVVPVIRNVEAMNFADIELTIAALGEKARTGK 429
           V TP GLVVPVI++V+  +  +I   IA L +KAR GK
Sbjct: 417 VDTPNGLVVPVIKDVDKKSLLEIAREIAELAKKARDGK 454

Length = 547

>gnl|CDD|233366 TIGR01348, PDHac_trf_long, pyruvate dehydrogenase complex dihydrolipoamide acetyltransferase, long form

 Score = 93.4 bits (232), Expect = 2e-20
 Identities = 68/231 (29%), Positives = 113/231 (48%), Gaps = 20/231 (8%)

Query: 106 QRVKMNRMRQRIAQRLKEAQNVNAMLTTFNEIDMSAIIEFRKAHLEAFQKKYGLKLGFMS 165
           + V M+R+R+     L     +   +T F++ D++ +  FRK    A  +K G+KL  + 
Sbjct: 319 EEVDMSRIRKISGANLTRNWTMIPHVTHFDKADITEMEAFRKQ-QNAAVEKEGVKLTVLH 377

Query: 166 PFIKASAYALQDQPVVNAVIE--GTDIVYRDYVDISVGMGRNESNLPRWCFNGLLSGVLV 223
             +KA A AL+  P  NA ++  G  ++ + YV+I V +     + P    NGLL  V+ 
Sbjct: 378 ILMKAVAAALKKFPKFNASLDLGGEQLILKKYVNIGVAV-----DTP----NGLLVPVI- 427

Query: 224 LTEHLNGKYCVSSRPSYERHTTGWACYDRLNWNLAIEDSDGGTFTISNGGVFGSLLGTPI 283
             + ++ K             +  A   R +  L  ++  G  FTIS+ G  G    TPI
Sbjct: 428 --KDVDRKGITE----LALELSDLAKKAR-DGKLTPDEMQGACFTISSLGGIGGTAFTPI 480

Query: 284 INPPQSAILGMHGTFERPVAIKGQVVVKPMMYVALTYDHRLIDGREAVLFL 334
           +N P+ AILG+  +   PV    +   + M+ ++L+YDHR+IDG +A  F 
Sbjct: 481 VNAPEVAILGVSKSGMEPVWNGKEFEPRLMLPLSLSYDHRVIDGADAARFT 531

This model describes a subset of pyruvate dehydrogenase complex dihydrolipoamide acetyltransferase specifically close by both phylogenetic and per cent identity (UPGMA) trees. Members of this set include two or three copies of the lipoyl-binding domain. E. coli AceF is a member of this model, while mitochondrial and some other bacterial forms belong to a separate model [Energy metabolism, Pyruvate dehydrogenase]. Length = 546

>gnl|CDD|236999 PRK11854, aceF, pyruvate dehydrogenase dihydrolipoyltransacetylase; Validated

 Score = 91.6 bits (228), Expect = 8e-20
 Identities = 34/100 (34%), Positives = 58/100 (58%), Gaps = 2/100 (2%)

Query: 334 LQKEAHLEAFQKKYGLKLGFMSPFIKASAYALQDQPVVNAVI--EGTDIVYRDYVDISVA 391
            +K+ + EA ++K G+K+  +   +KA A AL+  P  N+ +  +G  +  + YV+I +A
Sbjct: 443 FRKQQNAEAEKRKLGVKITPLVFIMKAVAAALEQMPRFNSSLSEDGQRLTLKKYVNIGIA 502

Query: 392 VATPKGLVVPVIRNVEAMNFADIELTIAALGEKARTGKYT 431
           V TP GLVVPV ++V      ++   +  + +KAR GK T
Sbjct: 503 VDTPNGLVVPVFKDVNKKGIIELSRELMDISKKARDGKLT 542

Length = 633

>gnl|CDD|233367 TIGR01349, PDHac_trf_mito, pyruvate dehydrogenase complex dihydrolipoamide acetyltransferase, long form

 Score = 77.1 bits (190), Expect = 3e-15
 Identities = 32/72 (44%), Positives = 42/72 (58%)

Query: 358 IKASAYALQDQPVVNAVIEGTDIVYRDYVDISVAVATPKGLVVPVIRNVEAMNFADIELT 417
           IKASA AL++ P  N+      I     VDISVAVATP GL+ P++RN +A   + I   
Sbjct: 269 IKASALALREVPEANSSWTDNFIRRYKNVDISVAVATPDGLITPIVRNADAKGLSTISNE 328

Query: 418 IAALGEKARTGK 429
           I  L ++AR  K
Sbjct: 329 IKDLAKRARNNK 340

This model represents one of several closely related clades of the dihydrolipoamide acetyltransferase subunit of the pyruvate dehydrogenase complex. It includes sequences from mitochondria and from alpha and beta branches of the proteobacteria, as well as from some other bacteria. Sequences from Gram-positive bacteria are not included. The non-enzymatic homolog protein X, which serves as an E3 component binding protein, falls within the clade phylogenetically but is rejected by its low score [Energy metabolism, Pyruvate dehydrogenase]. Length = 436

>gnl|CDD|215289 PLN02528, PLN02528, 2-oxoisovalerate dehydrogenase E2 component

 Score = 74.8 bits (184), Expect = 1e-14
 Identities = 55/205 (26%), Positives = 89/205 (43%), Gaps = 41/205 (20%)

Query: 136 EIDMSAIIEFRKAHLEAFQKKYGLKLGFMSPFIKASAYALQDQPVVNAVIEG--TDIVYR 193
           EI++ A++E  KA  +       +K  F+   IK+ + AL   P++N+      ++I  +
Sbjct: 215 EINVDALVEL-KASFQENNTDPTVKHTFLPFLIKSLSMALSKYPLLNSCFNEETSEIRLK 273

Query: 194 DYVDISVGMGRNESNL--P--RWCFNGLLSGVLVLTEHLNGKYCVSSRPSYERHTTGWAC 249
              +I V M   E  L  P  +      LS +L +T+ L+                    
Sbjct: 274 GSHNIGVAMA-TEHGLVVPNIKNV--QSLS-LLEITKELS-------------------- 309

Query: 250 YDRL-----NWNLAIEDSDGGTFTISNGGVFGSLLGTPIINPPQSAILGMHGTFERPV-- 302
             RL        L  ED  GGT T+SN G  G   G+P++N P+ AI+ + G  ++    
Sbjct: 310 --RLQHLAAENKLNPEDITGGTITLSNIGAIGGKFGSPVLNLPEVAIIAL-GRIQKVPRF 366

Query: 303 AIKGQVVVKPMMYVALTYDHRLIDG 327
              G V    +M V +  DHR++DG
Sbjct: 367 VDDGNVYPASIMTVTIGADHRVLDG 391

Length = 416

>gnl|CDD|200219 TIGR02927, SucB_Actino, 2-oxoglutarate dehydrogenase, E2 component, dihydrolipoamide succinyltransferase

 Score = 70.8 bits (173), Expect = 4e-13
 Identities = 32/90 (35%), Positives = 48/90 (53%), Gaps = 2/90 (2%)

Query: 342 AFQKKYGLKLGFMSPFIKASAYALQDQPVVNAVI--EGTDIVYRDYVDISVAVATPKGLV 399
            F +K G+ L F+  F++A   AL+  P VNA    E  ++ Y D   + +AV TP+GL+
Sbjct: 389 DFLEKNGVNLTFLPFFVQAVTEALKAHPNVNASYNAETKEVTYHDVEHVGIAVDTPRGLL 448

Query: 400 VPVIRNVEAMNFADIELTIAALGEKARTGK 429
           VPVI N   ++   +   I  L  +AR  K
Sbjct: 449 VPVIHNAGDLSLPGLAKAINDLAARARDNK 478

This model represents an Actinobacterial clade of E2 enzyme, a component of the 2-oxoglutarate dehydrogenase complex involved in the TCA cycle. These proteins have multiple domains including the catalytic domain (pfam00198), one or two biotin domains (pfam00364) and an E3-component binding domain (pfam02817). Length = 579

>gnl|CDD|233366 TIGR01348, PDHac_trf_long, pyruvate dehydrogenase complex dihydrolipoamide acetyltransferase, long form

 Score = 70.7 bits (173), Expect = 4e-13
 Identities = 40/101 (39%), Positives = 61/101 (60%), Gaps = 9/101 (8%)

Query: 340 LEAFQK-------KYGLKLGFMSPFIKASAYALQDQPVVNAVIE--GTDIVYRDYVDISV 390
           +EAF+K       K G+KL  +   +KA A AL+  P  NA ++  G  ++ + YV+I V
Sbjct: 355 MEAFRKQQNAAVEKEGVKLTVLHILMKAVAAALKKFPKFNASLDLGGEQLILKKYVNIGV 414

Query: 391 AVATPKGLVVPVIRNVEAMNFADIELTIAALGEKARTGKYT 431
           AV TP GL+VPVI++V+     ++ L ++ L +KAR GK T
Sbjct: 415 AVDTPNGLLVPVIKDVDRKGITELALELSDLAKKARDGKLT 455

This model describes a subset of pyruvate dehydrogenase complex dihydrolipoamide acetyltransferase specifically close by both phylogenetic and per cent identity (UPGMA) trees. Members of this set include two or three copies of the lipoyl-binding domain. E. coli AceF is a member of this model, while mitochondrial and some other bacterial forms belong to a separate model [Energy metabolism, Pyruvate dehydrogenase]. Length = 546

>gnl|CDD|215289 PLN02528, PLN02528, 2-oxoisovalerate dehydrogenase E2 component

 Score = 70.1 bits (172), Expect = 4e-13
 Identities = 27/94 (28%), Positives = 48/94 (51%), Gaps = 2/94 (2%)

Query: 338 AHLEAFQKKYGLKLGFMSPFIKASAYALQDQPVVNAVIEG--TDIVYRDYVDISVAVATP 395
           A  +       +K  F+   IK+ + AL   P++N+      ++I  +   +I VA+AT 
Sbjct: 226 ASFQENNTDPTVKHTFLPFLIKSLSMALSKYPLLNSCFNEETSEIRLKGSHNIGVAMATE 285

Query: 396 KGLVVPVIRNVEAMNFADIELTIAALGEKARTGK 429
            GLVVP I+NV++++  +I   ++ L   A   K
Sbjct: 286 HGLVVPNIKNVQSLSLLEITKELSRLQHLAAENK 319

Length = 416

>gnl|CDD|215397 PLN02744, PLN02744, dihydrolipoyllysine-residue acetyltransferase component of pyruvate dehydrogenase complex

 Score = 67.6 bits (165), Expect = 4e-12
 Identities = 65/188 (34%), Positives = 91/188 (48%), Gaps = 27/188 (14%)

Query: 147 KAHLEAFQKKYGLKLGFMSPF-IKASAYALQDQPVVNAVIEGTDIVYRDY--VDISVGMG 203
           ++ L + Q+  G K   ++   IKA+A AL+  P  N+    TD   R Y  V+I+V + 
Sbjct: 350 RSQLNSLQEASGGKKISVNDLVIKAAALALRKVPQCNS--SWTDDYIRQYHNVNINVAVQ 407

Query: 204 RNESNLPRWCFNGLLSGVLVLTEHLNGKYCVSSRPSYERHTTGWACYDRLNWNLAIEDSD 263
                      NGL   V+   +    K  +S+     +     A   R N +L  ED +
Sbjct: 408 TE---------NGLYVPVVKDAD----KKGLSTIAEEVKQLAQKA---REN-SLKPEDYE 450

Query: 264 GGTFTISN-GGVFGSLLGTPIINPPQSAILGMHGTFER---PVAIKGQVVVKPMMYVALT 319
           GGTFT+SN GG FG      IINPPQSAIL + G+ E+   P +   Q      M V L+
Sbjct: 451 GGTFTVSNLGGPFGIKQFCAIINPPQSAILAV-GSAEKRVIPGSGPDQYNFASFMSVTLS 509

Query: 320 YDHRLIDG 327
            DHR+IDG
Sbjct: 510 CDHRVIDG 517

Length = 539

>gnl|CDD|237002 PRK11857, PRK11857, dihydrolipoamide acetyltransferase; Reviewed

 Score = 61.3 bits (149), Expect = 2e-10
 Identities = 30/92 (32%), Positives = 52/92 (56%), Gaps = 2/92 (2%)

Query: 340 LEAFQKKYGLKLGFMSPFIKASAYALQDQPVVNAVIE--GTDIVYRDYVDISVAVATPKG 397
            +   K  G+KL F+    KA   AL++ P+  A  +   +++VY D +++ +AV T  G
Sbjct: 121 KDPVLKTEGVKLTFLPFIAKAILIALKEFPIFAAKYDEATSELVYPDTLNLGIAVDTEAG 180

Query: 398 LVVPVIRNVEAMNFADIELTIAALGEKARTGK 429
           L+VPVI+N + ++  +I   I+ L + AR  K
Sbjct: 181 LMVPVIKNAQKLSIVEIAKEISRLAKAARERK 212

Length = 306

>gnl|CDD|215397 PLN02744, PLN02744, dihydrolipoyllysine-residue acetyltransferase component of pyruvate dehydrogenase complex

 Score = 49.5 bits (118), Expect = 2e-06
 Identities = 32/90 (35%), Positives = 48/90 (53%), Gaps = 5/90 (5%)

Query: 340 LEAFQKKYGLKLGFMSPF-IKASAYALQDQPVVNAVIEGTDIVYRDY--VDISVAVATPK 396
           L + Q+  G K   ++   IKA+A AL+  P  N+    TD   R Y  V+I+VAV T  
Sbjct: 353 LNSLQEASGGKKISVNDLVIKAAALALRKVPQCNS--SWTDDYIRQYHNVNINVAVQTEN 410

Query: 397 GLVVPVIRNVEAMNFADIELTIAALGEKAR 426
           GL VPV+++ +    + I   +  L +KAR
Sbjct: 411 GLYVPVVKDADKKGLSTIAEEVKQLAQKAR 440

Length = 539

>gnl|CDD|184847 PRK14843, PRK14843, dihydrolipoamide acetyltransferase; Provisional

 Score = 42.6 bits (100), Expect = 3e-04
 Identities = 31/117 (26%), Positives = 54/117 (46%), Gaps = 7/117 (5%)

Query: 317 ALTYDHRLIDGREAVLFLQKEAHLEAFQKKYGLKLGFMSPFIKASAYALQDQPVVNAVI- 375
            L Y+   +D  E  L L+K+  LE   +  G K         A    L   P +NA + 
Sbjct: 145 TLNYE---VDMTEM-LALRKKV-LEPIMEATGKKTTVTDLLSLAVVKTLMKHPYINASLT 199

Query: 376 -EGTDIVYRDYVDISVAVATPKGLVVPVIRNVEAMNFADIELTIAALGEKARTGKYT 431
            +G  I+  +YV++++AV    GL+ PV+ N E M+ +++ +    +  +   GK  
Sbjct: 200 EDGKTIITHNYVNLAMAVGMDNGLMTPVVYNAEKMSLSELVVAFKDVIGRTLDGKLA 256

Length = 347

>gnl|CDD|237030 PRK12270, kgd, alpha-ketoglutarate decarboxylase; Reviewed

 Score = 42.6 bits (101), Expect = 4e-04
 Identities = 31/106 (29%), Positives = 52/106 (49%), Gaps = 13/106 (12%)

Query: 247 WACYDRL-----NWNLAIEDSDGGTFTISNGGVFGSLLGTPIINPPQSAILGMHGTFERP 301
           WA Y+ +     +  L  +D  G T +++N G  G++   P +   Q AI+G+ G  E P
Sbjct: 243 WAAYEDIVRRARDGKLTADDFQGTTISLTNPGGIGTVHSVPRLMKGQGAIIGV-GAMEYP 301

Query: 302 VAIKG-------QVVVKPMMYVALTYDHRLIDGREAVLFLQKEAHL 340
              +G       ++ +  +M +  TYDHR+I G E+  FL+    L
Sbjct: 302 AEFQGASEERLAELGISKVMTLTSTYDHRIIQGAESGEFLRTIHQL 347

Length = 1228

>gnl|CDD|237030 PRK12270, kgd, alpha-ketoglutarate decarboxylase; Reviewed

 Score = 42.2 bits (100), Expect = 5e-04
 Identities = 25/77 (32%), Positives = 39/77 (50%), Gaps = 9/77 (11%)

Query: 364 ALQDQPVVN---AVIEGT-DIVYRDYVDISVAVATPK-----GLVVPVIRNVEAMNFADI 414
           AL+  P +N   A ++G   +V   +V++ +A+  PK      LVVP I+  E M+FA  
Sbjct: 183 ALKAFPNMNRHYAEVDGKPTLVTPAHVNLGLAIDLPKKDGSRQLVVPAIKGAETMDFAQF 242

Query: 415 ELTIAALGEKARTGKYT 431
                 +  +AR GK T
Sbjct: 243 WAAYEDIVRRARDGKLT 259

Length = 1228

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	431
PRK05704	407	dihydrolipoamide succinyltransferase; Validated	100.0
TIGR01347	403	sucB 2-oxoglutarate dehydrogenase complex dihydrol	100.0
KOG0559|consensus	457		100.0
PLN02744	539	dihydrolipoyllysine-residue acetyltransferase comp	100.0
TIGR02927	590	SucB_Actino 2-oxoglutarate dehydrogenase, E2 compo	100.0
PLN02528	416	2-oxoisovalerate dehydrogenase E2 component	100.0
TIGR01349	435	PDHac_trf_mito pyruvate dehydrogenase complex dihy	100.0
PTZ00144	418	dihydrolipoamide succinyltransferase; Provisional	100.0
PLN02226	463	2-oxoglutarate dehydrogenase E2 component	100.0
TIGR01348	546	PDHac_trf_long pyruvate dehydrogenase complex dihy	100.0
PRK14843	347	dihydrolipoamide acetyltransferase; Provisional	100.0
PRK11857	306	dihydrolipoamide acetyltransferase; Reviewed	100.0
COG0508	404	AceF Pyruvate/2-oxoglutarate dehydrogenase complex	100.0
PRK11854	633	aceF pyruvate dehydrogenase dihydrolipoyltransacet	100.0
PF00198	231	2-oxoacid_dh: 2-oxoacid dehydrogenases acyltransfe	100.0
PRK11855	547	dihydrolipoamide acetyltransferase; Reviewed	100.0
PRK11856	411	branched-chain alpha-keto acid dehydrogenase subun	100.0
KOG0558|consensus	474		100.0
KOG0557|consensus	470		100.0
PRK12270	1228	kgd alpha-ketoglutarate decarboxylase; Reviewed	100.0
PF00198	231	2-oxoacid_dh: 2-oxoacid dehydrogenases acyltransfe	99.89
PRK14843	347	dihydrolipoamide acetyltransferase; Provisional	99.89
PRK11857	306	dihydrolipoamide acetyltransferase; Reviewed	99.88
PLN02226	463	2-oxoglutarate dehydrogenase E2 component	99.88
TIGR01347	403	sucB 2-oxoglutarate dehydrogenase complex dihydrol	99.88
PTZ00144	418	dihydrolipoamide succinyltransferase; Provisional	99.88
PRK05704	407	dihydrolipoamide succinyltransferase; Validated	99.87
TIGR02927	590	SucB_Actino 2-oxoglutarate dehydrogenase, E2 compo	99.87
PLN02744	539	dihydrolipoyllysine-residue acetyltransferase comp	99.87
TIGR01349	435	PDHac_trf_mito pyruvate dehydrogenase complex dihy	99.86
PLN02528	416	2-oxoisovalerate dehydrogenase E2 component	99.85
TIGR01348	546	PDHac_trf_long pyruvate dehydrogenase complex dihy	99.84
PRK12270	1228	kgd alpha-ketoglutarate decarboxylase; Reviewed	99.81
KOG0559|consensus	457		99.8
KOG0558|consensus	474		99.78
PRK11854	633	aceF pyruvate dehydrogenase dihydrolipoyltransacet	99.77
COG0508	404	AceF Pyruvate/2-oxoglutarate dehydrogenase complex	99.76
PRK11855	547	dihydrolipoamide acetyltransferase; Reviewed	99.7
KOG0557|consensus	470		99.69
PRK11856	411	branched-chain alpha-keto acid dehydrogenase subun	99.68
PF00302	206	CAT: Chloramphenicol acetyltransferase; InterPro:	99.58
PRK13757	219	chloramphenicol acetyltransferase; Provisional	99.54
COG4845	219	Chloramphenicol O-acetyltransferase [Defense mecha	99.05
PF00302	206	CAT: Chloramphenicol acetyltransferase; InterPro:	95.21
PRK11892	464	pyruvate dehydrogenase subunit beta; Provisional	94.65
PF02817	39	E3_binding: e3 binding domain; InterPro: IPR004167	94.12
PF13533	50	Biotin_lipoyl_2: Biotin-lipoyl like	92.1
PRK13757	219	chloramphenicol acetyltransferase; Provisional	91.98
COG4845	219	Chloramphenicol O-acetyltransferase [Defense mecha	91.72
PRK06748	83	hypothetical protein; Validated	90.73
PRK06748	83	hypothetical protein; Validated	87.63
COG0511	140	AccB Biotin carboxyl carrier protein [Lipid metabo	86.6
PF00364	74	Biotin_lipoyl: Biotin-requiring enzyme; InterPro:	83.87
PF00364	74	Biotin_lipoyl: Biotin-requiring enzyme; InterPro:	81.73
PRK07051	80	hypothetical protein; Validated	80.72
PRK05889	71	putative acetyl-CoA carboxylase biotin carboxyl ca	80.45

>PRK05704 dihydrolipoamide succinyltransferase; Validated

Probab=100.00  E-value=3e-68  Score=546.31  Aligned_cols=319  Identities=45%  Similarity=0.665  Sum_probs=268.1

Q ss_pred             ccccceeeeeecCCCCeEecCceeEEEecCCCCCCCC--C-CCCCCCCCCCCCCCCCCCCCCCCCCCCCCC-chhhhcCC
Q psy14345          8 QNNKKFLLLASLEDGATVKAGQQLFKIKPTATSVVDW--W-SSPEEGSSAQSRGYSSSSSSSLCCCSSPSP-SLCYSSAI   83 (431)
Q Consensus         8 ~~~~~~~l~~~~~eGd~v~VG~~L~~Ie~~~~~~a~~--~-~~~~~~~~~~~~~~~~~~~~~~~~~~sp~~-~lA~e~gI   83 (431)
                      +..+-.+..+.+++||.|++|++|++|+.++++.+..  + +++++.+.+.+....+ ...+.+..++|.+ +||+|+||
T Consensus        50 a~~~G~v~~i~v~~G~~V~~G~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~asP~aR~lA~e~gi  128 (407)
T PRK05704         50 APAAGVLSEILAEEGDTVTVGQVLGRIDEGAAAGAAAAAAAAAAAAAAAPAQAQAAA-AAEQSNDALSPAARKLAAENGL  128 (407)
T ss_pred             cCCCEEEEEEEeCCCCEeCCCCEEEEEecCCcccccCCCCCCCCCCCCCCCCCCCCc-cCCCccccCCchhhhHHhhcCC
Confidence            4445567788999999999999999998654321100  0 0000000000000000 0111123467777 99999999


Q ss_pred             CccccCCCC-------CCCCccc-----------c------C----CCCceEEeccHHHHHHHHHHHHhcccceEEEEee
Q psy14345         84 EAATVKLPP-------ADPTKEI-----------S------G----TRSEQRVKMNRMRQRIAQRLKEAQNVNAMLTTFN  135 (431)
Q Consensus        84 dl~~v~gtg-------~dv~~~~-----------a------~----~~~~~~vpls~~Rk~ia~~m~~S~~~iP~~t~~~  135 (431)
                      ||+.++|||       +|+.+..           +      .    ....+++||+++||+||++|++||+++||||++.
T Consensus       129 dl~~v~gtG~~GrI~~~DV~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vpls~~rk~ia~~m~~S~~~iPh~~~~~  208 (407)
T PRK05704        129 DASAVKGTGKGGRVTKEDVLAALAAAAAAPAAPAAAAPAAAPAPLGARPEERVPMTRLRKTIAERLLEAQNTTAMLTTFN  208 (407)
T ss_pred             ChhhCCCCCCCCcccHHHHHHHhhcccccCCCCCCCCCcCCCccccCCcceEeeChHHHHHHHHHHHHHhhcCCeEEEEE
Confidence            999999999       3442210           0      0    0013568999999999999999999999999999


Q ss_pred             eccchHHHHHHHHHHHHHHhhcCCCCChhHHHHHHHHHHHhhCCccceeeeCCeeEecCcccEEEEEeecCCCCCCccCC
Q psy14345        136 EIDMSAIIEFRKAHLEAFQKKYGLKLGFMSPFIKASAYALQDQPVVNAVIEGTDIVYRDYVDISVGMGRNESNLPRWCFN  215 (431)
Q Consensus       136 evD~t~l~~~r~~l~~~~~~~~g~k~t~~~~~ikA~a~Al~~~P~~N~~~~~~~i~~~~~v~igvav~~~~~~~~~~~~~  215 (431)
                      +||+++|+++|+++|+.+.++.|.|+||++||+||+++||++||.+|++|+++++++++++||||||++     +    +
T Consensus       209 evd~~~l~~~r~~~~~~~~~~~~~kls~~~~likA~a~AL~~~P~~Na~~~~~~i~~~~~~nIgiAv~~-----~----~  279 (407)
T PRK05704        209 EVDMTPVMDLRKQYKDAFEKKHGVKLGFMSFFVKAVVEALKRYPEVNASIDGDDIVYHNYYDIGIAVGT-----P----R  279 (407)
T ss_pred             EEeHHHHHHHHHHHHhhhHhhcCCCcCHHHHHHHHHHHHHHhCcHhhcEEcCCeEEEcCCCCeEEEEEC-----C----C
Confidence            999999999999999877776789999999999999999999999999999989999999999999999     8    9


Q ss_pred             cEEEEeecCCCccccccccCChhHHHHHHHHHHhhhhhcCCCCcccCCCceEEEecCCCCCccceeeccCCCcceeeecc
Q psy14345        216 GLLSGVLVLTEHLNGKYCVSSRPSYERHTTGWACYDRLNWNLAIEDSDGGTFTISNGGVFGSLLGTPIINPPQSAILGMH  295 (431)
Q Consensus       216 gL~vpvi~~a~~~s~~l~~~~~~~i~~~~~~l~~~ar~~g~L~~~~~~ggTftiSn~G~~G~~~~~pii~ppq~ail~vG  295 (431)
                      ||+||||+|+|++|  +     .+|++++++|+++|| +|+|+++||+||||||||+|+||+.+|+|||||||+||||+|
T Consensus       280 GLivPVI~~a~~~s--l-----~eIa~~~~~l~~~ar-~g~L~~~d~~ggTfTiSNlG~~G~~~~tpiIn~pq~aILgvG  351 (407)
T PRK05704        280 GLVVPVLRDADQLS--F-----AEIEKKIAELAKKAR-DGKLSIEELTGGTFTITNGGVFGSLMSTPIINPPQSAILGMH  351 (407)
T ss_pred             ceEeCcCCCcccCC--H-----HHHHHHHHHHHHHHH-cCCCChHHcCCceEEEecCCcccccceeccccCCcEEEEEcc
Confidence            99999999999999  9     999999999999999 999999999999999999999999999999999999999999


Q ss_pred             ceeEEEeeeCCeEEEeeeeeeeeeeeeeeeehHHHHHHHHHHHhHhhhh
Q psy14345        296 GTFERPVAIKGQVVVKPMMYVALTYDHRLIDGREAVLFLQKEAHLEAFQ  344 (431)
Q Consensus       296 ~i~~~pv~~~g~~~~~~~m~lslt~DHRvIDg~~a~~fl~~lk~l~~~~  344 (431)
                      ++.++||+.+|+++++++|+++++||||+|||+.+++||+.++++.+++
T Consensus       352 ~i~~~pv~~~g~i~~r~~~~lsls~DHRviDGa~aa~Fl~~l~~~le~p  400 (407)
T PRK05704        352 KIKERPVAVNGQIVIRPMMYLALSYDHRIIDGKEAVGFLVTIKELLEDP  400 (407)
T ss_pred             cceEEeEEECCEEEEEEEEEEEEEechhhhCcHHHHHHHHHHHHHhhCH
Confidence            9999999999999999999999999999999999999999999877764

>TIGR01347 sucB 2-oxoglutarate dehydrogenase complex dihydrolipoamide succinyltransferase (E2 component)

Probab=100.00  E-value=3.8e-68  Score=544.56  Aligned_cols=319  Identities=47%  Similarity=0.680  Sum_probs=268.0

Q ss_pred             ccccceeeeeecCCCCeEecCceeEEEecCCCCCC-C--CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC-chhhhcCC
Q psy14345          8 QNNKKFLLLASLEDGATVKAGQQLFKIKPTATSVV-D--WWSSPEEGSSAQSRGYSSSSSSSLCCCSSPSP-SLCYSSAI   83 (431)
Q Consensus         8 ~~~~~~~l~~~~~eGd~v~VG~~L~~Ie~~~~~~a-~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~~-~lA~e~gI   83 (431)
                      +..+-.+..+.+++||.|+||++|++|+.+++.++ +  ++++++....+.+... ++.....+..++|.+ +||+|+||
T Consensus        48 a~~~G~v~~i~~~eG~~v~vG~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~asP~aR~lA~e~gv  126 (403)
T TIGR01347        48 SPADGVLQEILFKEGDTVESGQVLAILEEGNDATAAPPAKSGEEKEETPAASAAA-APTAAANRPSLSPAARRLAKEHGI  126 (403)
T ss_pred             cCCCEEEEEEEeCCCCEeCCCCEEEEEecCCCCcccccccccCCCCCCCCCCCCC-CCcCccccccCCchhhhHHHHcCC
Confidence            44556777889999999999999999986532211 0  0000000000000000 000111122467777 99999999


Q ss_pred             CccccCCCC-------CCCCccc---------cC----------CCCceEEeccHHHHHHHHHHHHhcccceEEEEeeec
Q psy14345         84 EAATVKLPP-------ADPTKEI---------SG----------TRSEQRVKMNRMRQRIAQRLKEAQNVNAMLTTFNEI  137 (431)
Q Consensus        84 dl~~v~gtg-------~dv~~~~---------a~----------~~~~~~vpls~~Rk~ia~~m~~S~~~iP~~t~~~ev  137 (431)
                      ||+.|+|||       .|+.+..         +.          ....+.+||++|||+||++|++||+++||||++.++
T Consensus       127 dl~~v~gtG~~GrI~~~DV~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pls~~r~~ia~~m~~S~~~ip~~~~~~ev  206 (403)
T TIGR01347       127 DLSAVPGTGVTGRVTKEDIIKKTEAPASAQAPAPAAAAKAPANFTRPEERVKMTRLRQRIAERLKEAQNSTAMLTTFNEV  206 (403)
T ss_pred             ChhhCCCCCCCCcccHHHHHHhhhcccccCCCCCCcccCCccccCCCceEeeCcHHHHHHHHHHHHHhccCCEEEEEEEE
Confidence            999999999       3332210         00          011346899999999999999999999999999999


Q ss_pred             cchHHHHHHHHHHHHHHhhcCCCCChhHHHHHHHHHHHhhCCccceeeeCCeeEecCcccEEEEEeecCCCCCCccCCcE
Q psy14345        138 DMSAIIEFRKAHLEAFQKKYGLKLGFMSPFIKASAYALQDQPVVNAVIEGTDIVYRDYVDISVGMGRNESNLPRWCFNGL  217 (431)
Q Consensus       138 D~t~l~~~r~~l~~~~~~~~g~k~t~~~~~ikA~a~Al~~~P~~N~~~~~~~i~~~~~v~igvav~~~~~~~~~~~~~gL  217 (431)
                      |+++|+++|+++++.+.++.|.|+||++||+||++.||++||.||++|++++|++++++||||||++     +    +||
T Consensus       207 d~t~l~~~r~~~~~~~~~~~~~kls~~~~likA~a~AL~~~P~~Na~~~~~~i~~~~~vnIgvAv~~-----~----~GL  277 (403)
T TIGR01347       207 DMSAVMELRKRYKEEFEKKHGVKLGFMSFFVKAVVAALKRFPEVNAEIDGDDIVYKDYYDISVAVST-----D----RGL  277 (403)
T ss_pred             EHHHHHHHHHHHHhhhHhhcCCCcCHHHHHHHHHHHHHHhCcHhheEEcCCEEEEcCCCCeEEEEEC-----C----CCe
Confidence            9999999999999877777789999999999999999999999999999999999999999999999     8    999


Q ss_pred             EEEeecCCCccccccccCChhHHHHHHHHHHhhhhhcCCCCcccCCCceEEEecCCCCCccceeeccCCCcceeeeccce
Q psy14345        218 LSGVLVLTEHLNGKYCVSSRPSYERHTTGWACYDRLNWNLAIEDSDGGTFTISNGGVFGSLLGTPIINPPQSAILGMHGT  297 (431)
Q Consensus       218 ~vpvi~~a~~~s~~l~~~~~~~i~~~~~~l~~~ar~~g~L~~~~~~ggTftiSn~G~~G~~~~~pii~ppq~ail~vG~i  297 (431)
                      ++||||++|++|  +     .+|++++++|+++|| +|+|+++||+||||||||+|+||+.+|+|||||||+||||+|++
T Consensus       278 ~vPVIr~ad~~s--l-----~eIa~~~~~l~~~ar-~gkL~~~d~~ggTfTISNlG~~G~~~~tpiin~pq~aILgvG~i  349 (403)
T TIGR01347       278 VVPVVRNADRMS--F-----ADIEKEIADLGKKAR-DGKLTLEDMTGGTFTITNGGVFGSLMSTPIINPPQSAILGMHGI  349 (403)
T ss_pred             EECcCCCcccCC--H-----HHHHHHHHHHHHHHH-cCCCChhhcCCceEEEecCCcCcccceeccccCCceEEEecccc
Confidence            999999999999  9     999999999999999 99999999999999999999999999999999999999999999


Q ss_pred             eEEEeeeCCeEEEeeeeeeeeeeeeeeeehHHHHHHHHHHHhHhhhh
Q psy14345        298 FERPVAIKGQVVVKPMMYVALTYDHRLIDGREAVLFLQKEAHLEAFQ  344 (431)
Q Consensus       298 ~~~pv~~~g~~~~~~~m~lslt~DHRvIDg~~a~~fl~~lk~l~~~~  344 (431)
                      +++|++.+|++.++++|+++++||||+|||+.+++||+.++++.+.+
T Consensus       350 ~~~pv~~~g~i~~r~~m~lsLt~DHRviDGa~aa~Fl~~l~~~le~p  396 (403)
T TIGR01347       350 KERPVAVNGQIEIRPMMYLALSYDHRLIDGKEAVTFLVTIKELLEDP  396 (403)
T ss_pred             eEEEEEECCeEEEEEEEEEEEEecchhhChHHHHHHHHHHHHHhcCH
Confidence            99999999999999999999999999999999999999999877654

dihydrolipoamide acetyltransferase. The seed for this model includes mitochondrial and Gram-negative bacterial forms. Mycobacterial candidates are highly derived, differ in having and extra copy of the lipoyl-binding domain at the N-terminus. They score below the trusted cutoff, but above the noise cutoff and above all examples of dihydrolipoamide acetyltransferase.

>KOG0559|consensus

Probab=100.00  E-value=1.7e-66  Score=503.34  Aligned_cols=228  Identities=66%  Similarity=0.976  Sum_probs=222.1

Q ss_pred             cCCCCceEEeccHHHHHHHHHHHHhcccceEEEEeeeccchHHHHHHHHHHHHHHhhcCCCCChhHHHHHHHHHHHhhCC
Q psy14345        100 SGTRSEQRVKMNRMRQRIAQRLKEAQNVNAMLTTFNEIDMSAIIEFRKAHLEAFQKKYGLKLGFMSPFIKASAYALQDQP  179 (431)
Q Consensus       100 a~~~~~~~vpls~~Rk~ia~~m~~S~~~iP~~t~~~evD~t~l~~~r~~l~~~~~~~~g~k~t~~~~~ikA~a~Al~~~P  179 (431)
                      ...+.+++++|++||++||+||.+|+++...+|.+.||||++|+++|++++++|-+++|.|+.||.+|+||++.||++.|
T Consensus       223 ~~~R~E~RVkMnRmR~RIA~RLKdsQNt~A~LTTFNEvDMS~lm~mRk~ykdaf~kKhGvKlGfMs~F~KA~~~Alq~qP  302 (457)
T KOG0559|consen  223 TPSRSERRVKMNRMRLRIAERLKDSQNTAAMLTTFNEVDMSNLMEMRKQYKDAFLKKHGVKLGFMSGFSKAAAYALQDQP  302 (457)
T ss_pred             CCCcchhhhhhHHHHHHHHHHHHhhhhhhhhhhhhhhhhHHHHHHHHHHHHHHHHHHhCceeeehhHHHHHHHHHhhhCc
Confidence            34567889999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             ccceeeeCCeeEecCcccEEEEEeecCCCCCCccCCcEEEEeecCCCccccccccCChhHHHHHHHHHHhhhhhcCCCCc
Q psy14345        180 VVNAVIEGTDIVYRDYVDISVGMGRNESNLPRWCFNGLLSGVLVLTEHLNGKYCVSSRPSYERHTTGWACYDRLNWNLAI  259 (431)
Q Consensus       180 ~~N~~~~~~~i~~~~~v~igvav~~~~~~~~~~~~~gL~vpvi~~a~~~s~~l~~~~~~~i~~~~~~l~~~ar~~g~L~~  259 (431)
                      .+|+.++|+.|+|+++|||+|||+|     |    +||+||||||+|.|+  +     .||..++..|..+|| +|+|+.
T Consensus       303 vVNavIdg~~iVYRDyvDISvAVaT-----p----kGLVvPViRnae~Mn--~-----adIE~~i~~L~~KAr-~g~lai  365 (457)
T KOG0559|consen  303 VVNAVIDGDDIVYRDYVDISVAVAT-----P----KGLVVPVIRNAESMN--F-----ADIEKTIAGLGKKAR-DGKLAI  365 (457)
T ss_pred             ceeeeecCCeeEEeecceeEEEeec-----C----Cceeeeeeccccccc--H-----HHHHHHHHHHHHhhc-cCceee
Confidence            9999999999999999999999999     9    999999999999999  9     999999999999999 999999


Q ss_pred             ccCCCceEEEecCCCCCccceeeccCCCcceeeeccceeEEEeeeCCeEEEeeeeeeeeeeeeeeeehHHHHHHHHHHHh
Q psy14345        260 EDSDGGTFTISNGGVFGSLLGTPIINPPQSAILGMHGTFERPVAIKGQVVVKPMMYVALTYDHRLIDGREAVLFLQKEAH  339 (431)
Q Consensus       260 ~~~~ggTftiSn~G~~G~~~~~pii~ppq~ail~vG~i~~~pv~~~g~~~~~~~m~lslt~DHRvIDg~~a~~fl~~lk~  339 (431)
                      +||.||||||||.|.||..++||||||||+|||||++|.+||++++|+++.|||||+.||||||+|||.++..||+.+|+
T Consensus       366 edM~gGTFTISNGGVfGSL~gTPIINpPQsAILGmHgI~eRPv~v~G~Vv~RPMMYvALTYDHRliDGREAVtFLr~iK~  445 (457)
T KOG0559|consen  366 EDMAGGTFTISNGGVFGSLYGTPIINPPQSAILGMHGIKERPVVVGGQVVPRPMMYVALTYDHRLIDGREAVTFLRKIKE  445 (457)
T ss_pred             eeccCceEEEeCCcEeeeeccCcccCCchhhhhhcccccccceeeCCEeeeccceEEEeeccccccccHHHHHHHHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999998


Q ss_pred             Hhhhh
Q psy14345        340 LEAFQ  344 (431)
Q Consensus       340 l~~~~  344 (431)
                      .-+.+
T Consensus       446 ~VEDP  450 (457)
T KOG0559|consen  446 AVEDP  450 (457)
T ss_pred             HhhCH
Confidence            65544

>PLN02744 dihydrolipoyllysine-residue acetyltransferase component of pyruvate dehydrogenase complex

Probab=100.00  E-value=4.9e-66  Score=540.92  Aligned_cols=320  Identities=24%  Similarity=0.252  Sum_probs=264.3

Q ss_pred             ccccceeeeeecCCCC-eEecCceeEEEecCCCCC----------C--CC-CC---CC---CCC--CCCCCCCCC-C-C-
Q psy14345          8 QNNKKFLLLASLEDGA-TVKAGQQLFKIKPTATSV----------V--DW-WS---SP---EEG--SSAQSRGYS-S-S-   62 (431)
Q Consensus         8 ~~~~~~~l~~~~~eGd-~v~VG~~L~~Ie~~~~~~----------a--~~-~~---~~---~~~--~~~~~~~~~-~-~-   62 (431)
                      +...-+|..+.+++|+ +|+||++|+.|..++++.          +  +. ++   .+   ..+  +.+.+...+ + . 
T Consensus       160 a~~~G~l~ki~~~eG~~~v~vG~~ia~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  239 (539)
T PLN02744        160 CMEEGYLAKIVKGDGAKEIKVGEVIAITVEEEEDIGKFKDYKPSSSAAPAAPKAKPSPPPPKEEEVEKPASSPEPKASKP  239 (539)
T ss_pred             CCCCcEEEEEEecCCCcccCCCCEEEEEccCccccccccccccccccccccccccCCCCCcccccccCCCCCcccccccc
Confidence            4456788899999996 899999999995332210          0  00 00   00   000  000000000 0 0 


Q ss_pred             -CCC-C-CCCCCCCCC-chhhhcCCCccccCCCCC-------CCCcccc----------C------CCCceEEeccHHHH
Q psy14345         63 -SSS-S-LCCCSSPSP-SLCYSSAIEAATVKLPPA-------DPTKEIS----------G------TRSEQRVKMNRMRQ  115 (431)
Q Consensus        63 -~~~-~-~~~~~sp~~-~lA~e~gIdl~~v~gtg~-------dv~~~~a----------~------~~~~~~vpls~~Rk  115 (431)
                       .+. . .+..++|.+ +||+|+||||+.++|||.       |+.+..+          .      ...++++|+++|||
T Consensus       240 ~~~~~~~~~i~ASP~aRrLAre~GVDLs~V~GTGp~GRI~k~DV~a~~~~~~~~~~~~~~~~~~~~~~~~~~vpls~~Rk  319 (539)
T PLN02744        240 SAPPSSGDRIFASPLARKLAEDNNVPLSSIKGTGPDGRIVKADIEDYLASGGKGATAPPSTDSKAPALDYTDIPNTQIRK  319 (539)
T ss_pred             cccccccccccCCchhHHHHHHcCCCHHHCCCCCCCCcccHHHHHHHhhccccccCCCCCcccCCCCCccccccchhHHH
Confidence             000 1 112356766 999999999999999993       4322100          0      00135789999999


Q ss_pred             HHHHHHHHhcccceEEEEeeeccchHHHHHHHHHHHHHHhhcCCCCChhHHHHHHHHHHHhhCCccceeeeCCeeEecCc
Q psy14345        116 RIAQRLKEAQNVNAMLTTFNEIDMSAIIEFRKAHLEAFQKKYGLKLGFMSPFIKASAYALQDQPVVNAVIEGTDIVYRDY  195 (431)
Q Consensus       116 ~ia~~m~~S~~~iP~~t~~~evD~t~l~~~r~~l~~~~~~~~g~k~t~~~~~ikA~a~Al~~~P~~N~~~~~~~i~~~~~  195 (431)
                      .||++|++|++++||||++.+||+++|+++|+++|+.+.+..|.|+||++||+||++.||++||++|++|+++.|+++++
T Consensus       320 ~IA~~m~~S~~~iPh~t~~~evdvt~L~~lR~~l~~~~~~~~g~kls~~~~liKA~a~AL~~~P~lNa~~~~~~i~~~~~  399 (539)
T PLN02744        320 VTASRLLQSKQTIPHYYLTVDTRVDKLMALRSQLNSLQEASGGKKISVNDLVIKAAALALRKVPQCNSSWTDDYIRQYHN  399 (539)
T ss_pred             HHHHHHHHHHhhCCeEEEEEEEEcHHHHHHHHHHHHHhhhcccCccCHHHHHHHHHHHHHHhCcHhheeeccCcEEEeCC
Confidence            99999999999999999999999999999999999776666689999999999999999999999999999999999999


Q ss_pred             ccEEEEEeecCCCCCCccCCcEEEEeecCCCccccccccCChhHHHHHHHHHHhhhhhcCCCCcccCCCceEEEecCC-C
Q psy14345        196 VDISVGMGRNESNLPRWCFNGLLSGVLVLTEHLNGKYCVSSRPSYERHTTGWACYDRLNWNLAIEDSDGGTFTISNGG-V  274 (431)
Q Consensus       196 v~igvav~~~~~~~~~~~~~gL~vpvi~~a~~~s~~l~~~~~~~i~~~~~~l~~~ar~~g~L~~~~~~ggTftiSn~G-~  274 (431)
                      |||||||++     +    +||+||||+|+|+++  +     .||++++++|+++|| +|+|+++||+||||||||+| |
T Consensus       400 vnIgvAV~t-----~----~GL~vPVIr~ad~~s--l-----~eIa~ei~~L~~kAr-~~kL~~~dl~GGTfTISNlGg~  462 (539)
T PLN02744        400 VNINVAVQT-----E----NGLYVPVVKDADKKG--L-----STIAEEVKQLAQKAR-ENSLKPEDYEGGTFTVSNLGGP  462 (539)
T ss_pred             cceEEEEEC-----C----CCeEECcCCCcccCC--H-----HHHHHHHHHHHHHHH-cCCCChhhcCCceEEEeCCCcc
Confidence            999999999     8    999999999999999  9     999999999999999 99999999999999999997 8


Q ss_pred             CCccceeeccCCCcceeeeccceeEEEee--eCCeEEEeeeeeeeeeeeeeeeehHHHHHHHHHHHhHhhhh
Q psy14345        275 FGSLLGTPIINPPQSAILGMHGTFERPVA--IKGQVVVKPMMYVALTYDHRLIDGREAVLFLQKEAHLEAFQ  344 (431)
Q Consensus       275 ~G~~~~~pii~ppq~ail~vG~i~~~pv~--~~g~~~~~~~m~lslt~DHRvIDg~~a~~fl~~lk~l~~~~  344 (431)
                      ||+++|+|||||||+||||+|+++++||+  .+|+++++++|+++++||||+|||+.+++||+.++++.+++
T Consensus       463 ~G~~~ftpIInpPqvaILgvG~i~~~pvv~~~~g~i~~r~~m~lsLs~DHRvIDGa~AA~FL~~lk~~LE~P  534 (539)
T PLN02744        463 FGIKQFCAIINPPQSAILAVGSAEKRVIPGSGPDQYNFASFMSVTLSCDHRVIDGAIGAEWLKAFKGYIENP  534 (539)
T ss_pred             cccceeeccccCCcEEEEEcccceeEeEEeccCCeEEEeeeeEEeEecchhhhCcHHHHHHHHHHHHHhcCH
Confidence            99999999999999999999999999998  48899999999999999999999999999999999877654

>TIGR02927 SucB_Actino 2-oxoglutarate dehydrogenase, E2 component, dihydrolipoamide succinyltransferase

Probab=100.00  E-value=7.3e-66  Score=550.84  Aligned_cols=317  Identities=30%  Similarity=0.396  Sum_probs=260.7

Q ss_pred             ccceeeeeecCCCCeEecCceeEEEecCCCCCC------CCC-C------CCCCCCCC------CC---C----CCC--C
Q psy14345         10 NKKFLLLASLEDGATVKAGQQLFKIKPTATSVV------DWW-S------SPEEGSSA------QS---R----GYS--S   61 (431)
Q Consensus        10 ~~~~~l~~~~~eGd~v~VG~~L~~Ie~~~~~~a------~~~-~------~~~~~~~~------~~---~----~~~--~   61 (431)
                      ..-+|..+.+++||+|+||++|++|+.++++.+      ++. +      ++.+...+      ++   .    ...  +
T Consensus       185 ~~G~v~~i~v~~G~~v~vG~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  264 (590)
T TIGR02927       185 VAGTILEILAEEDDTVDVGAEIAKIGDAGAAAAEDAKAEEEAEAKAEAKPEEKPDPKKDEAAEPEPDEPEAEKAEKKEEK  264 (590)
T ss_pred             CCeEEEEEecCCCCEecCCCEEEEEecCCCccccccccccccccccccccCCCCcccccccccccccccccccccccccc
Confidence            445677889999999999999999985442210      000 0      00000000      00   0    000  0


Q ss_pred             CCC---C-C-CCCCCCCCC-chhhhcCCCccccCCCC-------CCCCcc-----------c--------cC-----C--
Q psy14345         62 SSS---S-S-LCCCSSPSP-SLCYSSAIEAATVKLPP-------ADPTKE-----------I--------SG-----T--  102 (431)
Q Consensus        62 ~~~---~-~-~~~~~sp~~-~lA~e~gIdl~~v~gtg-------~dv~~~-----------~--------a~-----~--  102 (431)
                      ..+   . . .+..++|.+ +||+|+||||+.|+|||       +|+...           .        +.     .  
T Consensus       265 ~~~~~~~~~~~~~~asP~aR~lA~e~gvdl~~v~GtG~~GrI~k~DV~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  344 (590)
T TIGR02927       265 AAAAPAANSDGSPYVTPLVRKLAAEHGIDLNSVKGTGIGGRIRKQDVLAAAEGAKAAAEAPAAEAAAAAPAAAAAASASP  344 (590)
T ss_pred             ccccccccccCcccCCchhHHHHHHcCCCHHHCCCCCCCCeEeHHHHHHHHhccccccccccccccccCccccccccCCC
Confidence            000   0 0 123456776 99999999999999999       232110           0        00     0  


Q ss_pred             ------CCceEEeccHHHHHHHHHHHHhcccceEEEEeeeccchHHHHHHHHHHHHHHhhcCCCCChhHHHHHHHHHHHh
Q psy14345        103 ------RSEQRVKMNRMRQRIAQRLKEAQNVNAMLTTFNEIDMSAIIEFRKAHLEAFQKKYGLKLGFMSPFIKASAYALQ  176 (431)
Q Consensus       103 ------~~~~~vpls~~Rk~ia~~m~~S~~~iP~~t~~~evD~t~l~~~r~~l~~~~~~~~g~k~t~~~~~ikA~a~Al~  176 (431)
                            ..++++||++|||.||++|++||+++||||++.+||||+|+++|+++|+.+.+++|.|+||++||+||++.||+
T Consensus       345 ~~~~~~~~~~~~pls~~rk~ia~~m~~S~~~iPh~~~~~evdvt~l~~~R~~l~~~~~~~~~~kls~~~~iiKA~a~AL~  424 (590)
T TIGR02927       345 APAKAHLRGTTQKANRIREITAKKTREALQASAQLTQLHEVDMTKIAALRARAKAAFAEKEGVNLTFLPFFAKAVIDALK  424 (590)
T ss_pred             ccccccccCceeeccHHHHHHHHHHHHHhccCCeEEEEeEEEcHHHHHHHHHHHhhhHHhcCCcccHHHHHHHHHHHHHH
Confidence                  02457899999999999999999999999999999999999999999976666668999999999999999999


Q ss_pred             hCCccceeeeC--CeeEecCcccEEEEEeecCCCCCCccCCcEEEEeecCCCccccccccCChhHHHHHHHHHHhhhhhc
Q psy14345        177 DQPVVNAVIEG--TDIVYRDYVDISVGMGRNESNLPRWCFNGLLSGVLVLTEHLNGKYCVSSRPSYERHTTGWACYDRLN  254 (431)
Q Consensus       177 ~~P~~N~~~~~--~~i~~~~~v~igvav~~~~~~~~~~~~~gL~vpvi~~a~~~s~~l~~~~~~~i~~~~~~l~~~ar~~  254 (431)
                      +||.||++|++  +.|+++++|||||||++     +    +||+||||+|+++|+  +     .+|++++++|+++|| +
T Consensus       425 ~~P~~Na~~~~~~~~i~~~~~vnigvAv~t-----~----~GL~vPvIk~a~~~s--l-----~~ia~~i~~l~~kAr-~  487 (590)
T TIGR02927       425 AHPNVNASYNADTKEITYHAAEHLGFAVDT-----D----AGLLSPVIHNAGDLS--L-----GEIAKAIADIAARAR-N  487 (590)
T ss_pred             hCCHhheEEecCCCEEEEeCCccEEEEEEC-----C----CCcEecccCCcccCC--H-----HHHHHHHHHHHHHHH-c
Confidence            99999999974  58999999999999999     8    999999999999999  9     999999999999999 9


Q ss_pred             CCCCcccCCCceEEEecCCCCCccceeeccCCCcceeeeccceeEEEeeeC---C--eEEEeeeeeeeeeeeeeeeehHH
Q psy14345        255 WNLAIEDSDGGTFTISNGGVFGSLLGTPIINPPQSAILGMHGTFERPVAIK---G--QVVVKPMMYVALTYDHRLIDGRE  329 (431)
Q Consensus       255 g~L~~~~~~ggTftiSn~G~~G~~~~~pii~ppq~ail~vG~i~~~pv~~~---g--~~~~~~~m~lslt~DHRvIDg~~  329 (431)
                      |+|+++||+||||||||+||||+++|+|||||||+||||+|+++++|++.+   |  +++++++|++||+||||+|||+.
T Consensus       488 gkL~p~e~~GgTfTISNlG~~G~~~~tpIIn~PqvaILgvG~i~~~pv~~~~~~g~~~~~~~~~m~lsls~DHRviDGa~  567 (590)
T TIGR02927       488 GKLKPDDLAGGTFTITNIGSEGALFDTPILIPPQAAILGTGAIVKRPRVITDEDGIDSIAIRQMCHLPLTYDHQLIDGAD  567 (590)
T ss_pred             CCCChHHhCCCeEEEECCCCCCccceeceecCCCeEEEEcccceEEEEEeccCCCcccEEEEeeEEEeeeccchhcCcHH
Confidence            999999999999999999999999999999999999999999999999862   3  49999999999999999999999


Q ss_pred             HHHHHHHHHhHhhh
Q psy14345        330 AVLFLQKEAHLEAF  343 (431)
Q Consensus       330 a~~fl~~lk~l~~~  343 (431)
                      +++||+.|+++.++
T Consensus       568 aa~Fl~~lk~~LE~  581 (590)
T TIGR02927       568 AGRFLTTIKDRLEE  581 (590)
T ss_pred             HHHHHHHHHHHHhC
Confidence            99999999987664

This model represents an Actinobacterial clade of E2 enzyme, a component of the 2-oxoglutarate dehydrogenase complex involved in the TCA cycle. These proteins have multiple domains including the catalytic domain (pfam00198), one or two biotin domains (pfam00364) and an E3-component binding domain (pfam02817).

>PLN02528 2-oxoisovalerate dehydrogenase E2 component

Probab=100.00  E-value=3e-65  Score=525.80  Aligned_cols=319  Identities=21%  Similarity=0.292  Sum_probs=262.5

Q ss_pred             ccccccceeeeeecCCCCeEecCceeEEEecCCCCCCC--CCCCCCCCCCCCCCCCC--CCCCCCCCCCCCCCC-chhhh
Q psy14345          6 LKQNNKKFLLLASLEDGATVKAGQQLFKIKPTATSVVD--WWSSPEEGSSAQSRGYS--SSSSSSLCCCSSPSP-SLCYS   80 (431)
Q Consensus         6 ~~~~~~~~~l~~~~~eGd~v~VG~~L~~Ie~~~~~~a~--~~~~~~~~~~~~~~~~~--~~~~~~~~~~~sp~~-~lA~e   80 (431)
                      +.++.+-.+..+.+++||.|++|++|++|+.++++.+.  +.+++.+ +.+.+....  +....+....++|.+ +||+|
T Consensus        44 v~a~~~G~v~~i~v~~G~~v~vG~~l~~i~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~asP~aR~lA~e  122 (416)
T PLN02528         44 ITSRYKGKVAQINFSPGDIVKVGETLLKIMVEDSQHLRSDSLLLPTD-SSNIVSLAESDERGSNLSGVLSTPAVRHLAKQ  122 (416)
T ss_pred             EecCCCEEEEEEEeCCCCEeCCCCEEEEEeccCCccccccCCCCCCC-CccCCCCCCCCccccccCCccCChHHHHHHHH
Confidence            34556667777899999999999999999855432110  0001100 000000000  000011122456766 99999


Q ss_pred             cCCCccccCCCC-------CCCCccc----------------cCC-------------C--CceEEeccHHHHHHHHHHH
Q psy14345         81 SAIEAATVKLPP-------ADPTKEI----------------SGT-------------R--SEQRVKMNRMRQRIAQRLK  122 (431)
Q Consensus        81 ~gIdl~~v~gtg-------~dv~~~~----------------a~~-------------~--~~~~vpls~~Rk~ia~~m~  122 (431)
                      +|||++.++|||       .|+.+..                +..             .  ..+++||+++||+||++|+
T Consensus       123 ~gvdl~~v~gtG~~GrI~~~DV~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~~ia~~m~  202 (416)
T PLN02528        123 YGIDLNDILGTGKDGRVLKEDVLKYAAQKGVVKDSSSAEEATIAEQEEFSTSVSTPTEQSYEDKTIPLRGFQRAMVKTMT  202 (416)
T ss_pred             hCCCHHHCCCCCCCCcEeHHHHHHHhhcccccccccccccccCCccccccccCCCcccccCcceeeccchHHHHHHHHHH
Confidence            999999999998       2321100                000             0  1346899999999999999


Q ss_pred             HhcccceEEEEeeeccchHHHHHHHHHHHHHHhhcCCCCChhHHHHHHHHHHHhhCCccceeeeCC--eeEecCcccEEE
Q psy14345        123 EAQNVNAMLTTFNEIDMSAIIEFRKAHLEAFQKKYGLKLGFMSPFIKASAYALQDQPVVNAVIEGT--DIVYRDYVDISV  200 (431)
Q Consensus       123 ~S~~~iP~~t~~~evD~t~l~~~r~~l~~~~~~~~g~k~t~~~~~ikA~a~Al~~~P~~N~~~~~~--~i~~~~~v~igv  200 (431)
                      +|+ ++||||++.+||+++|+++|+++++... ..|.|+||++||+||+++||++||.+|++|+++  .|++++++||||
T Consensus       203 ~S~-~ip~~~~~~eid~~~l~~~r~~~~~~~~-~~g~kls~~~~likA~a~aL~~~P~~Na~~~~~~~~i~~~~~vnIgi  280 (416)
T PLN02528        203 AAA-KVPHFHYVEEINVDALVELKASFQENNT-DPTVKHTFLPFLIKSLSMALSKYPLLNSCFNEETSEIRLKGSHNIGV  280 (416)
T ss_pred             hcC-cCCeEEEEEEEEhHHHHHHHHHHhhhhh-hcCCcccHHHHHHHHHHHHHHhCchhhEEEecCCceEEEeCCCCeEE
Confidence            997 9999999999999999999999986533 348999999999999999999999999999864  799999999999


Q ss_pred             EEeecCCCCCCccCCcEEEEeecCCCccccccccCChhHHHHHHHHHHhhhhhcCCCCcccCCCceEEEecCCCCCccce
Q psy14345        201 GMGRNESNLPRWCFNGLLSGVLVLTEHLNGKYCVSSRPSYERHTTGWACYDRLNWNLAIEDSDGGTFTISNGGVFGSLLG  280 (431)
Q Consensus       201 av~~~~~~~~~~~~~gL~vpvi~~a~~~s~~l~~~~~~~i~~~~~~l~~~ar~~g~L~~~~~~ggTftiSn~G~~G~~~~  280 (431)
                      ||++     +    +||++|||+++++++  +     .+|++++++|+++|| +|+|+++||+||||||||+||||+++|
T Consensus       281 Av~~-----~----~GL~vPvi~~a~~~s--l-----~eI~~~~~~l~~~ar-~gkL~~~dl~ggTftiSNlG~~G~~~~  343 (416)
T PLN02528        281 AMAT-----E----HGLVVPNIKNVQSLS--L-----LEITKELSRLQHLAA-ENKLNPEDITGGTITLSNIGAIGGKFG  343 (416)
T ss_pred             EEeC-----C----CCeEecccCCcccCC--H-----HHHHHHHHHHHHHHH-cCCCCHHHhCCceEEEeCCccccCCce
Confidence            9999     8    999999999999999  9     999999999999999 999999999999999999999999999


Q ss_pred             eeccCCCcceeeeccceeEEEeee-CCeEEEeeeeeeeeeeeeeeeehHHHHHHHHHHHhHhhhh
Q psy14345        281 TPIINPPQSAILGMHGTFERPVAI-KGQVVVKPMMYVALTYDHRLIDGREAVLFLQKEAHLEAFQ  344 (431)
Q Consensus       281 ~pii~ppq~ail~vG~i~~~pv~~-~g~~~~~~~m~lslt~DHRvIDg~~a~~fl~~lk~l~~~~  344 (431)
                      +|||||||+||||+|++.++|++. +|++.++++|+++++||||+|||+.+++||+.++++.+++
T Consensus       344 tpIin~pq~aIlgvG~i~~~pv~~~~g~i~~r~~m~lslt~DHRviDGa~aa~Fl~~lk~~le~P  408 (416)
T PLN02528        344 SPVLNLPEVAIIALGRIQKVPRFVDDGNVYPASIMTVTIGADHRVLDGATVARFCNEWKSYVEKP  408 (416)
T ss_pred             ECcccCCceEEEEcccceEEeEEeCCCcEEEEeEEEEeEeccchhcCcHHHHHHHHHHHHHHhCH
Confidence            999999999999999999999997 5899999999999999999999999999999999877765

>TIGR01349 PDHac_trf_mito pyruvate dehydrogenase complex dihydrolipoamide acetyltransferase, long form

Probab=100.00  E-value=2.8e-65  Score=528.74  Aligned_cols=317  Identities=26%  Similarity=0.291  Sum_probs=261.9

Q ss_pred             cccceeeeeecCCCCe-EecCceeEEEecCCCCCC--------------CCCCCC--CCC---CCC--CCCCC--CCC--
Q psy14345          9 NNKKFLLLASLEDGAT-VKAGQQLFKIKPTATSVV--------------DWWSSP--EEG---SSA--QSRGY--SSS--   62 (431)
Q Consensus         9 ~~~~~~l~~~~~eGd~-v~VG~~L~~Ie~~~~~~a--------------~~~~~~--~~~---~~~--~~~~~--~~~--   62 (431)
                      -.+-.+..+.+++||+ |+||++|+.|+.++++.+              ++.+++  +..   +.+  .+...  ++.  
T Consensus        48 ~~~G~l~~i~v~~g~~~v~vG~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  127 (435)
T TIGR01349        48 VEEGYLAKILVPEGTKDVPVNKPIAVLVEEKEDVADAFKNYKLESSASAPKPSEIAPTAPPSAPKPSPAPQKQSPEPSSP  127 (435)
T ss_pred             CCCEEEEEEEECCCCEEecCCCEEEEEeccCCccccccccccccccccCCCCcccccCCCCcCCCCCCCccccccccccc
Confidence            3445688889999999 999999999975432210              000000  000   000  00000  000  


Q ss_pred             CC---C-C-CCCCCCCCC-chhhhcCCCccccCCCC-------CCCCccc------------cC------------CCCc
Q psy14345         63 SS---S-S-LCCCSSPSP-SLCYSSAIEAATVKLPP-------ADPTKEI------------SG------------TRSE  105 (431)
Q Consensus        63 ~~---~-~-~~~~~sp~~-~lA~e~gIdl~~v~gtg-------~dv~~~~------------a~------------~~~~  105 (431)
                      ..   . . .+.+++|.+ +||+|+||||+.|+|||       +|+....            +.            ....
T Consensus       128 ~~~~~~~~~~~~~asP~vR~lA~e~gvdl~~v~gtG~~GrI~~~DV~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  207 (435)
T TIGR01349       128 APLSDKESGDRIFASPLAKKLAKEKGIDLSAVAGSGPNGRIVKKDIESFVPQSPASANFQAAATTPATKKAAAPVSTGSY  207 (435)
T ss_pred             cccccccccccccCCHHHHHHHHHcCCCHhHCCCCCCCCceeHHHHHHHHhcccccCCCccccccccccccCCCccCCcc
Confidence            00   0 0 112356666 99999999999999999       2332110            00            0013


Q ss_pred             eEEeccHHHHHHHHHHHHhcccceEEEEeeeccchHHHHHHHHHHHHHHhhcCCCCChhHHHHHHHHHHHhhCCccceee
Q psy14345        106 QRVKMNRMRQRIAQRLKEAQNVNAMLTTFNEIDMSAIIEFRKAHLEAFQKKYGLKLGFMSPFIKASAYALQDQPVVNAVI  185 (431)
Q Consensus       106 ~~vpls~~Rk~ia~~m~~S~~~iP~~t~~~evD~t~l~~~r~~l~~~~~~~~g~k~t~~~~~ikA~a~Al~~~P~~N~~~  185 (431)
                      +++||++|||.|+++|++|++++||||++.+||+|+|+++|+++++.+.+  |.|+||++||+||+++||++||.||++|
T Consensus       208 ~~v~ls~~rk~ia~~m~~S~~~ip~~~~~~evd~t~l~~~r~~~~~~~~~--~~klt~~~~l~kA~a~AL~~~P~~Na~~  285 (435)
T TIGR01349       208 EDVPLSNIRKIIAKRLLESKQTIPHYYVSIECNVDKLLALRKELNAMASE--VYKLSVNDFIIKASALALREVPEANSSW  285 (435)
T ss_pred             eeecccHHHHHHHHHHHHHHhhCCeEEEEEEEEhHHHHHHHHHHHhhhhc--CCcccHHHHHHHHHHHHHHhCcHhheEE
Confidence            57899999999999999999999999999999999999999999875433  7899999999999999999999999999


Q ss_pred             eCCeeEecCcccEEEEEeecCCCCCCccCCcEEEEeecCCCccccccccCChhHHHHHHHHHHhhhhhcCCCCcccCCCc
Q psy14345        186 EGTDIVYRDYVDISVGMGRNESNLPRWCFNGLLSGVLVLTEHLNGKYCVSSRPSYERHTTGWACYDRLNWNLAIEDSDGG  265 (431)
Q Consensus       186 ~~~~i~~~~~v~igvav~~~~~~~~~~~~~gL~vpvi~~a~~~s~~l~~~~~~~i~~~~~~l~~~ar~~g~L~~~~~~gg  265 (431)
                      ++++|+++++|||||||++     +    +||++|||+|+|+||  +     .+|++++++|+++|| +|+|+++||+||
T Consensus       286 ~~~~i~~~~~vnigvAv~~-----~----~GL~vPvi~~a~~~s--l-----~eia~~i~~l~~~ar-~~~L~~~d~~gg  348 (435)
T TIGR01349       286 TDNFIRRYKNVDISVAVAT-----P----DGLITPIVRNADAKG--L-----STISNEIKDLAKRAR-NNKLKPEEFQGG  348 (435)
T ss_pred             eCCeEEEeCCeeEEEEEEC-----C----CCeEECCCCCcccCC--H-----HHHHHHHHHHHHHHh-cCCCChhhcCCC
Confidence            9999999999999999999     8    999999999999999  9     999999999999999 999999999999


Q ss_pred             eEEEecCCCCCccceeeccCCCcceeeeccceeEEEeeeCCe---EEEeeeeeeeeeeeeeeeehHHHHHHHHHHHhHhh
Q psy14345        266 TFTISNGGVFGSLLGTPIINPPQSAILGMHGTFERPVAIKGQ---VVVKPMMYVALTYDHRLIDGREAVLFLQKEAHLEA  342 (431)
Q Consensus       266 TftiSn~G~~G~~~~~pii~ppq~ail~vG~i~~~pv~~~g~---~~~~~~m~lslt~DHRvIDg~~a~~fl~~lk~l~~  342 (431)
                      ||||||+|+||+++|+|||||||+||||+|++.++|++.+|+   ++++++|+++|+||||+|||+.+++||+.++++.+
T Consensus       349 TfTISNlG~~G~~~~tpiin~pq~aIlgvG~i~~~pv~~~~~~~~i~~~~~m~lsls~DHRviDGa~aa~Fl~~lk~~lE  428 (435)
T TIGR01349       349 TFTISNLGMFGIKDFTAIINPPQACILAVGAVEDVAVVDNDEEKGFAVASIMSVTLSCDHRVIDGAVGAEFLKSFKKYLE  428 (435)
T ss_pred             eEEEecCCccCccceECccCCCceEEEEcccceEEeEEeCCccceeEEeeeEEEeEeecchhhCcHHHHHHHHHHHHHHh
Confidence            999999999999999999999999999999999999998887   99999999999999999999999999999998776


Q ss_pred             hh
Q psy14345        343 FQ  344 (431)
Q Consensus       343 ~~  344 (431)
                      .+
T Consensus       429 ~p  430 (435)
T TIGR01349       429 NP  430 (435)
T ss_pred             CH
Confidence            54

This model represents one of several closely related clades of the dihydrolipoamide acetyltransferase subunit of the pyruvate dehydrogenase complex. It includes sequences from mitochondria and from alpha and beta branches of the proteobacteria, as well as from some other bacteria. Sequences from Gram-positive bacteria are not included. The non-enzymatic homolog protein X, which serves as an E3 component binding protein, falls within the clade phylogenetically but is rejected by its low score.

>PTZ00144 dihydrolipoamide succinyltransferase; Provisional

Probab=100.00  E-value=4.7e-64  Score=513.12  Aligned_cols=314  Identities=47%  Similarity=0.705  Sum_probs=253.4

Q ss_pred             cccccceeeeeecCCCCeEecCceeEEEecCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC-chhhhcCCCc
Q psy14345          7 KQNNKKFLLLASLEDGATVKAGQQLFKIKPTATSVVDWWSSPEEGSSAQSRGYSSSSSSSLCCCSSPSP-SLCYSSAIEA   85 (431)
Q Consensus         7 ~~~~~~~~l~~~~~eGd~v~VG~~L~~Ie~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~~-~lA~e~gIdl   85 (431)
                      .+..+-++..+.+++||.|++|++|++|+.++++.+++. .++..+.+. .+..+     ......|.+ ++|.+.+++.
T Consensus        91 ~Ap~~G~v~~i~v~~G~~V~~G~~L~~I~~~~~~~~~~~-~~~~~~~~~-~~~~~-----~~~~~~p~~~~~a~~~~~a~  163 (418)
T PTZ00144         91 RAPASGVITKIFAEEGDTVEVGAPLSEIDTGGAPPAAAP-AAAAAAKAE-KTTPE-----KPKAAAPTPEPPAASKPTPP  163 (418)
T ss_pred             ecCCCeEEEEEEeCCCCEecCCCEEEEEcCCCccccccc-cccCCCCCc-cCCCC-----CCCCCCCccccccccccCCc
Confidence            345566777889999999999999999985543211100 000000000 00000     000011222 4455556554


Q ss_pred             cccCCC---CCCCCccc--c-CCCCceEEeccHHHHHHHHHHHHhcccceEEEEeeeccchHHHHHHHHHHHHHHhhcCC
Q psy14345         86 ATVKLP---PADPTKEI--S-GTRSEQRVKMNRMRQRIAQRLKEAQNVNAMLTTFNEIDMSAIIEFRKAHLEAFQKKYGL  159 (431)
Q Consensus        86 ~~v~gt---g~dv~~~~--a-~~~~~~~vpls~~Rk~ia~~m~~S~~~iP~~t~~~evD~t~l~~~r~~l~~~~~~~~g~  159 (431)
                      ..+...   +.....+.  . .....+.+|+++|||+||++|++|++++||||++.|||+|+|+++|+++++.+.+++|.
T Consensus       164 p~vr~~~~~~~~~~~~~~~~~~~~~~~~ipls~~Rk~IA~~M~~S~~~iPh~t~~~eid~t~l~~~r~~~~~~~~~~~g~  243 (418)
T PTZ00144        164 AAAKPPEPAPAAKPPPTPVARADPRETRVPMSRMRQRIAERLKASQNTCAMLTTFNECDMSALMELRKEYKDDFQKKHGV  243 (418)
T ss_pred             hhhhccccCCCCCCCCCCccccCCCceeeeCcHHHHHHHHHHHHHHhhCCeEEEEEEEechHHHHHHHHHHhhhhhhcCC
Confidence            444321   10000000  0 01124568999999999999999999999999999999999999999999877777789


Q ss_pred             CCChhHHHHHHHHHHHhhCCccceeeeCCeeEecCcccEEEEEeecCCCCCCccCCcEEEEeecCCCccccccccCChhH
Q psy14345        160 KLGFMSPFIKASAYALQDQPVVNAVIEGTDIVYRDYVDISVGMGRNESNLPRWCFNGLLSGVLVLTEHLNGKYCVSSRPS  239 (431)
Q Consensus       160 k~t~~~~~ikA~a~Al~~~P~~N~~~~~~~i~~~~~v~igvav~~~~~~~~~~~~~gL~vpvi~~a~~~s~~l~~~~~~~  239 (431)
                      |+||++||+||++.||++||.+|++|++++|++++++||||||++     +    +||+||||+++|+++  +     .+
T Consensus       244 klS~~~~liKAva~AL~~~P~~Na~~~~~~i~~~~~vnIgvAV~~-----~----~GL~vPVI~~ad~~s--l-----~e  307 (418)
T PTZ00144        244 KLGFMSAFVKASTIALKKMPIVNAYIDGDEIVYRNYVDISVAVAT-----P----TGLVVPVIRNCENKS--F-----AE  307 (418)
T ss_pred             cccHHHHHHHHHHHHHHhChHhheEEcCCEEEEecCCCEEEEEEC-----C----CCEEEccCCCcccCC--H-----HH
Confidence            999999999999999999999999999989999999999999999     8    999999999999999  9     99


Q ss_pred             HHHHHHHHHhhhhhcCCCCcccCCCceEEEecCCCCCccceeeccCCCcceeeeccceeEEEeeeCCeEEEeeeeeeeee
Q psy14345        240 YERHTTGWACYDRLNWNLAIEDSDGGTFTISNGGVFGSLLGTPIINPPQSAILGMHGTFERPVAIKGQVVVKPMMYVALT  319 (431)
Q Consensus       240 i~~~~~~l~~~ar~~g~L~~~~~~ggTftiSn~G~~G~~~~~pii~ppq~ail~vG~i~~~pv~~~g~~~~~~~m~lslt  319 (431)
                      |++++++|+++|| +|+|+++||+||||||||+|+||+++|+|||||||+||||+|++.++|++.+|+++++++|+++++
T Consensus       308 Ia~ei~~L~~~ar-~g~L~~~e~~GgTfTISNlG~~G~~~~tpIInpPq~aILgvG~i~~~pvv~~g~i~~r~~m~lsLs  386 (418)
T PTZ00144        308 IEKELADLAEKAR-NNKLTLEDMTGGTFTISNGGVFGSLMGTPIINPPQSAILGMHAIKKRPVVVGNEIVIRPIMYLALT  386 (418)
T ss_pred             HHHHHHHHHHHHH-cCCCCHHHhCCceEEEECCCCCCcceeeeeecCCceEEEecccceeEeEEECCEEEEEeEEEEEEe
Confidence            9999999999999 999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             eeeeeeehHHHHHHHHHHHhHhhhh
Q psy14345        320 YDHRLIDGREAVLFLQKEAHLEAFQ  344 (431)
Q Consensus       320 ~DHRvIDg~~a~~fl~~lk~l~~~~  344 (431)
                      ||||+|||+.+++||+.++++.+.+
T Consensus       387 ~DHRviDGa~AA~FL~~lk~~LE~P  411 (418)
T PTZ00144        387 YDHRLIDGRDAVTFLKKIKDLIEDP  411 (418)
T ss_pred             cchhhhChHHHHHHHHHHHHHhcCH
Confidence            9999999999999999999877654

>PLN02226 2-oxoglutarate dehydrogenase E2 component

Probab=100.00  E-value=4.8e-64  Score=516.34  Aligned_cols=223  Identities=54%  Similarity=0.893  Sum_probs=216.7

Q ss_pred             ceEEeccHHHHHHHHHHHHhcccceEEEEeeeccchHHHHHHHHHHHHHHhhcCCCCChhHHHHHHHHHHHhhCCcccee
Q psy14345        105 EQRVKMNRMRQRIAQRLKEAQNVNAMLTTFNEIDMSAIIEFRKAHLEAFQKKYGLKLGFMSPFIKASAYALQDQPVVNAV  184 (431)
Q Consensus       105 ~~~vpls~~Rk~ia~~m~~S~~~iP~~t~~~evD~t~l~~~r~~l~~~~~~~~g~k~t~~~~~ikA~a~Al~~~P~~N~~  184 (431)
                      .+.+|+++|||.||++|++||+++||||++.|||+|+|+++|+++++.+.+++|.|+||++||+||+++||++||.+|++
T Consensus       234 ~~~ipls~~Rk~IA~~M~~S~~tiPh~t~~~evDvt~L~~lR~~l~~~~~~~~g~klS~~~~liKAva~AL~~~P~lNa~  313 (463)
T PLN02226        234 ERRVPMTRLRKRVATRLKDSQNTFALLTTFNEVDMTNLMKLRSQYKDAFYEKHGVKLGLMSGFIKAAVSALQHQPVVNAV  313 (463)
T ss_pred             ceeeeChHHHHHHHHHHHHHHhcCCEEEEEEEEEcHHHHHHHHHHHhhhhhhcCCcccHHHHHHHHHHHHHHhCCHhheE
Confidence            45789999999999999999999999999999999999999999998777777899999999999999999999999999


Q ss_pred             eeCCeeEecCcccEEEEEeecCCCCCCccCCcEEEEeecCCCccccccccCChhHHHHHHHHHHhhhhhcCCCCcccCCC
Q psy14345        185 IEGTDIVYRDYVDISVGMGRNESNLPRWCFNGLLSGVLVLTEHLNGKYCVSSRPSYERHTTGWACYDRLNWNLAIEDSDG  264 (431)
Q Consensus       185 ~~~~~i~~~~~v~igvav~~~~~~~~~~~~~gL~vpvi~~a~~~s~~l~~~~~~~i~~~~~~l~~~ar~~g~L~~~~~~g  264 (431)
                      |+++.|+++++|||||||++     +    +||+||||+|+|+++  +     .||++++++|+++|| +|+|+++||+|
T Consensus       314 ~~~~~i~~~~~vnIGvAV~t-----~----~GLvVPVIr~ad~~s--l-----~eIa~ei~~L~~kAR-~gkL~~~dl~G  376 (463)
T PLN02226        314 IDGDDIIYRDYVDISIAVGT-----S----KGLVVPVIRGADKMN--F-----AEIEKTINGLAKKAN-EGTISIDEMAG  376 (463)
T ss_pred             EcCCEEEEeCcccEEEEEEC-----C----CCEEeccCCCcccCC--H-----HHHHHHHHHHHHHHH-cCCCCHHHhCC
Confidence            99999999999999999999     8    999999999999999  9     999999999999999 99999999999


Q ss_pred             ceEEEecCCCCCccceeeccCCCcceeeeccceeEEEeeeCCeEEEeeeeeeeeeeeeeeeehHHHHHHHHHHHhHhhhh
Q psy14345        265 GTFTISNGGVFGSLLGTPIINPPQSAILGMHGTFERPVAIKGQVVVKPMMYVALTYDHRLIDGREAVLFLQKEAHLEAFQ  344 (431)
Q Consensus       265 gTftiSn~G~~G~~~~~pii~ppq~ail~vG~i~~~pv~~~g~~~~~~~m~lslt~DHRvIDg~~a~~fl~~lk~l~~~~  344 (431)
                      |||||||+|+||+++|+|||||||+||||+|++.++|++.+|+++++++|+++++||||+|||+.+++|++.++++.+.+
T Consensus       377 GTfTISNlG~~Gv~~ftPIInpPqvAILgvG~i~~~pvv~~g~i~~r~~m~lsLs~DHRVIDGa~aA~FL~~lk~~LE~P  456 (463)
T PLN02226        377 GSFTVSNGGVYGSLISTPIINPPQSAILGMHSIVSRPMVVGGSVVPRPMMYVALTYDHRLIDGREAVYFLRRVKDVVEDP  456 (463)
T ss_pred             CeEEEECCCcccccceeccccCCcEEEEEcccceEEEEEECCEEEEEeEEEEeEecchhhhCcHHHHHHHHHHHHHhcCH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999877765

>TIGR01348 PDHac_trf_long pyruvate dehydrogenase complex dihydrolipoamide acetyltransferase, long form

Probab=100.00  E-value=2e-64  Score=535.83  Aligned_cols=320  Identities=24%  Similarity=0.335  Sum_probs=264.3

Q ss_pred             cccccceeeeeecCCCCeEecCceeEEEecCCCCCCC--C--CCC-----CCC-CCCC--CCCCCC--CCC---C-C--C
Q psy14345          7 KQNNKKFLLLASLEDGATVKAGQQLFKIKPTATSVVD--W--WSS-----PEE-GSSA--QSRGYS--SSS---S-S--S   66 (431)
Q Consensus         7 ~~~~~~~~l~~~~~eGd~v~VG~~L~~Ie~~~~~~a~--~--~~~-----~~~-~~~~--~~~~~~--~~~---~-~--~   66 (431)
                      .+...-.|..+.+++||.|++|++|+.|+.++++++.  .  .++     ++. +..+  .+....  .+.   . .  .
T Consensus       162 ~a~~~G~v~~i~v~~G~~v~vG~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  241 (546)
T TIGR01348       162 PAPASGVVKSVKVKVGDSVPTGDLILTLSVAGSTPATAPAPASAQPAAQSPAATQPEPAAAPAAAKAQAPAPQQAGTQNP  241 (546)
T ss_pred             cCCCCcEEEEEecCCCCEecCCCEEEEEecCCCCcccccCcccccccCCCCccccccccCCCCCCCccCccccccccccc
Confidence            3445567788899999999999999999854432110  0  000     000 0000  000000  000   0 0  1


Q ss_pred             CCC-CCCCCC-chhhhcCCCccccCCCCC-------CCCcc--------c------c-C-C-------------CCceEE
Q psy14345         67 LCC-CSSPSP-SLCYSSAIEAATVKLPPA-------DPTKE--------I------S-G-T-------------RSEQRV  108 (431)
Q Consensus        67 ~~~-~~sp~~-~lA~e~gIdl~~v~gtg~-------dv~~~--------~------a-~-~-------------~~~~~v  108 (431)
                      .+. +++|.+ +||+|+||||+.++|||.       |+...        .      + + .             ..++++
T Consensus       242 ~~~~~asP~aR~lA~e~gvdl~~v~gtG~~GrI~~~DV~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v  321 (546)
T TIGR01348       242 AKVDHAAPAVRRLAREFGVDLSAVKGTGIKGRILREDVQRFVKEPSVRAQAAAASAAGGAPGALPWPNVDFSKFGEVEEV  321 (546)
T ss_pred             ccccCCCHHHHHHHHHcCCCHhhCCCCCCCCeEeHHHHHHHhhccccccCcccccccCCccccCCCccccccccCcceee
Confidence            112 366776 999999999999999992       33110        0      0 0 0             013568


Q ss_pred             eccHHHHHHHHHHHHhcccceEEEEeeeccchHHHHHHHHHHHHHHhhcCCCCChhHHHHHHHHHHHhhCCccceeeeC-
Q psy14345        109 KMNRMRQRIAQRLKEAQNVNAMLTTFNEIDMSAIIEFRKAHLEAFQKKYGLKLGFMSPFIKASAYALQDQPVVNAVIEG-  187 (431)
Q Consensus       109 pls~~Rk~ia~~m~~S~~~iP~~t~~~evD~t~l~~~r~~l~~~~~~~~g~k~t~~~~~ikA~a~Al~~~P~~N~~~~~-  187 (431)
                      ||++|||.||++|++|++++||||++.++|+|+|+++|+++|+.+.+ .|.|+||++||+||++.||++||.+|++|++ 
T Consensus       322 ~~s~~rk~ia~~m~~S~~~iPh~~~~~evdvt~l~~~r~~l~~~~~~-~g~kls~~~~l~kA~~~AL~~~P~~Na~~~~~  400 (546)
T TIGR01348       322 DMSRIRKISGANLTRNWTMIPHVTHFDKADITEMEAFRKQQNAAVEK-EGVKLTVLHILMKAVAAALKKFPKFNASLDLG  400 (546)
T ss_pred             ecchHHHHHHHHHHHHhhcCCEEEEEEEEEcHHHHHHHHHHHhhhhh-cCCcccHHHHHHHHHHHHHHhCChhhEEEeCC
Confidence            99999999999999999999999999999999999999999976555 4889999999999999999999999999984 


Q ss_pred             -CeeEecCcccEEEEEeecCCCCCCccCCcEEEEeecCCCccccccccCChhHHHHHHHHHHhhhhhcCCCCcccCCCce
Q psy14345        188 -TDIVYRDYVDISVGMGRNESNLPRWCFNGLLSGVLVLTEHLNGKYCVSSRPSYERHTTGWACYDRLNWNLAIEDSDGGT  266 (431)
Q Consensus       188 -~~i~~~~~v~igvav~~~~~~~~~~~~~gL~vpvi~~a~~~s~~l~~~~~~~i~~~~~~l~~~ar~~g~L~~~~~~ggT  266 (431)
                       +.|+++++|||||||++     +    +||++|||+++|+||  +     .+|++++++|+++|| +|+|+++||+|||
T Consensus       401 ~~~i~~~~~vnigvAv~~-----~----~GL~vPvi~~a~~~s--l-----~~ia~~~~~l~~~ar-~g~L~~~d~~ggT  463 (546)
T TIGR01348       401 GEQLILKKYVNIGVAVDT-----P----NGLLVPVIKDVDRKG--I-----TELALELSDLAKKAR-DGKLTPDEMQGAC  463 (546)
T ss_pred             CCEEEEeCCcCEEEEEEC-----C----CCeEECCcCCcccCC--H-----HHHHHHHHHHHHHHh-cCCCCHHHhCCCe
Confidence             57999999999999999     8    999999999999999  9     999999999999999 9999999999999


Q ss_pred             EEEecCCCCCccceeeccCCCcceeeeccceeEEEeeeCCeEEEeeeeeeeeeeeeeeeehHHHHHHHHHHHhHhhhh
Q psy14345        267 FTISNGGVFGSLLGTPIINPPQSAILGMHGTFERPVAIKGQVVVKPMMYVALTYDHRLIDGREAVLFLQKEAHLEAFQ  344 (431)
Q Consensus       267 ftiSn~G~~G~~~~~pii~ppq~ail~vG~i~~~pv~~~g~~~~~~~m~lslt~DHRvIDg~~a~~fl~~lk~l~~~~  344 (431)
                      |||||+||||+++|+|||||||+||||+|+++++|++.+|+++++++|+++++||||+|||..+++||+.++++.+++
T Consensus       464 fTiSNlG~~G~~~~~piin~Pq~aIl~vg~~~~~p~~~~~~~~~~~~m~ltls~DHRviDGa~aa~Fl~~~~~~le~P  541 (546)
T TIGR01348       464 FTISSLGGIGGTAFTPIVNAPEVAILGVSKSGMEPVWNGKEFEPRLMLPLSLSYDHRVIDGADAARFTTYICESLADI  541 (546)
T ss_pred             EEEeCCCCCCCcceECCCCCCceEEEEcccceEEeEEECCEEEEEEEEEEeEeccchhcChHHHHHHHHHHHHHHhCH
Confidence            999999999999999999999999999999999999999999999999999999999999999999999999877654

This model describes a subset of pyruvate dehydrogenase complex dihydrolipoamide acetyltransferase specifically close by both phylogenetic and per cent identity (UPGMA) trees. Members of this set include two or three copies of the lipoyl-binding domain. E. coli AceF is a member of this model, while mitochondrial and some other bacterial forms belong to a separate model.

>PRK14843 dihydrolipoamide acetyltransferase; Provisional

Probab=100.00  E-value=6e-65  Score=511.36  Aligned_cols=258  Identities=29%  Similarity=0.412  Sum_probs=236.7

Q ss_pred             CCCCCC-chhhhcCCCccccCCCCC-------CCCcc----------c--cC-------------CCCceEEeccHHHHH
Q psy14345         70 CSSPSP-SLCYSSAIEAATVKLPPA-------DPTKE----------I--SG-------------TRSEQRVKMNRMRQR  116 (431)
Q Consensus        70 ~~sp~~-~lA~e~gIdl~~v~gtg~-------dv~~~----------~--a~-------------~~~~~~vpls~~Rk~  116 (431)
                      .++|.+ +||+|+||||+.++|||.       |+...          .  +.             .+..+.+|+++|||.
T Consensus        50 ~asP~aR~lA~e~gidl~~v~gtG~~GrI~k~DV~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~l~~~r~~  129 (347)
T PRK14843         50 RISPLAKRIALEHNIAWQEIQGTGHRGKIMKKDVLALLPENIENDSIKSPAQIEKVEEVPDNVTPYGEIERIPMTPMRKV  129 (347)
T ss_pred             cCCchhhHHHHHcCCCHhhCCCCCCCCcccHHHHHHHHhccccCccccCCCCCccccCCCcccccCCcceeeeCcHHHHH
Confidence            467777 999999999999999992       22110          0  00             011356899999999


Q ss_pred             HHHHHHHhcccceEEEEeeeccchHHHHHHHHHHHHHHhhcCCCCChhHHHHHHHHHHHhhCCccceeeeC--CeeEecC
Q psy14345        117 IAQRLKEAQNVNAMLTTFNEIDMSAIIEFRKAHLEAFQKKYGLKLGFMSPFIKASAYALQDQPVVNAVIEG--TDIVYRD  194 (431)
Q Consensus       117 ia~~m~~S~~~iP~~t~~~evD~t~l~~~r~~l~~~~~~~~g~k~t~~~~~ikA~a~Al~~~P~~N~~~~~--~~i~~~~  194 (431)
                      ||++|++||+++||||++.|||+++|+++|+++++.+.++.|.|+||++||+||++.||++||.+|++|++  +.|++++
T Consensus       130 ia~~m~~S~~~ip~~~~~~evd~t~l~~~r~~~~~~~~~~~~~kls~~~~likA~a~AL~~~P~~Na~~~~~~~~i~~~~  209 (347)
T PRK14843        130 IAQRMVESYLTAPTFTLNYEVDMTEMLALRKKVLEPIMEATGKKTTVTDLLSLAVVKTLMKHPYINASLTEDGKTIITHN  209 (347)
T ss_pred             HHHHHHHHHhhCCeEEEEEEEEchHHHHHHHHHHHHHHhhcCCcccHHHHHHHHHHHHHHhCcceeEEEecCCCeEEEec
Confidence            99999999999999999999999999999999997766666889999999999999999999999999984  5799999


Q ss_pred             cccEEEEEeecCCCCCCccCCcEEEEeecCCCccccccccCChhHHHHHHHHHHhhhhhcCCCCcccCCCceEEEecCCC
Q psy14345        195 YVDISVGMGRNESNLPRWCFNGLLSGVLVLTEHLNGKYCVSSRPSYERHTTGWACYDRLNWNLAIEDSDGGTFTISNGGV  274 (431)
Q Consensus       195 ~v~igvav~~~~~~~~~~~~~gL~vpvi~~a~~~s~~l~~~~~~~i~~~~~~l~~~ar~~g~L~~~~~~ggTftiSn~G~  274 (431)
                      +|||||||++     +    +||+||||+|+|+|+  +     .+|++++++|+++|| +|+|+++||+||||||||+||
T Consensus       210 ~vnigvAV~~-----~----~GL~vPVIr~a~~~s--l-----~eIa~~i~~l~~~Ar-~~kL~~~d~~GgTfTISNlG~  272 (347)
T PRK14843        210 YVNLAMAVGM-----D----NGLMTPVVYNAEKMS--L-----SELVVAFKDVIGRTL-DGKLAPSELQNSTFTISNLGM  272 (347)
T ss_pred             ccceEEEEec-----C----CCeEeCcCCCcccCC--H-----HHHHHHHHHHHHHHH-cCCCCHHHhCCCeEEEeCCCC
Confidence            9999999999     8    999999999999999  9     999999999999999 999999999999999999999


Q ss_pred             CCccceeeccCCCcceeeeccceeEEEeeeCCeEEEeeeeeeeeeeeeeeeehHHHHHHHHHHHhHhhhh
Q psy14345        275 FGSLLGTPIINPPQSAILGMHGTFERPVAIKGQVVVKPMMYVALTYDHRLIDGREAVLFLQKEAHLEAFQ  344 (431)
Q Consensus       275 ~G~~~~~pii~ppq~ail~vG~i~~~pv~~~g~~~~~~~m~lslt~DHRvIDg~~a~~fl~~lk~l~~~~  344 (431)
                      ||+++|+|||||||+||||+|++.++|++.+|+++++++|+++++||||+|||+.+++||+.++++.+.+
T Consensus       273 ~G~~~~tpIInpPq~aIlgvG~i~~~pv~~~g~i~~r~~m~lsls~DHRviDGa~aa~Fl~~lk~~lE~p  342 (347)
T PRK14843        273 FGVQSFGPIINQPNSAILGVSSTIEKPVVVNGEIVIRPIMSLGLTIDHRVVDGMAGAKFMKDLKELIETP  342 (347)
T ss_pred             CcccceeccccCCceEEEecCCcceeeEEECCeEEEEeEEEEEEecchhhhCcHHHHHHHHHHHHHhcCH
Confidence            9999999999999999999999999999999999999999999999999999999999999999876654

>PRK11857 dihydrolipoamide acetyltransferase; Reviewed

Probab=100.00  E-value=2.5e-64  Score=498.95  Aligned_cols=259  Identities=27%  Similarity=0.418  Sum_probs=237.2

Q ss_pred             CCCCCC-chhhhcCCCccccCCCC-------CCCCccc-------c--------C---------------CCCceEEecc
Q psy14345         70 CSSPSP-SLCYSSAIEAATVKLPP-------ADPTKEI-------S--------G---------------TRSEQRVKMN  111 (431)
Q Consensus        70 ~~sp~~-~lA~e~gIdl~~v~gtg-------~dv~~~~-------a--------~---------------~~~~~~vpls  111 (431)
                      +++|.+ +||+|+|||++.++|||       +|+....       +        .               ...++.+|++
T Consensus         3 ~asP~aR~lA~e~gvdl~~v~gtG~~GrI~k~DV~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ls   82 (306)
T PRK11857          3 LATPIARALAKKLGIDISLLKGSGRDGKILAEDVENFIKSLKSAPTPAEAASVSSAQQAAKTAAPAAAPPKLEGKREKVA   82 (306)
T ss_pred             CCCchhHHHHHHcCCCHHHCCCCCCCCceeHHHHHHHhhccccccCCccccccccccccccccCCcccccCCCceeccCc
Confidence            356776 99999999999999999       2331100       0        0               0013467999


Q ss_pred             HHHHHHHHHHHHhcccceEEEEeeeccchHHHHHHHHHHHHHHhhcCCCCChhHHHHHHHHHHHhhCCccceeeeC--Ce
Q psy14345        112 RMRQRIAQRLKEAQNVNAMLTTFNEIDMSAIIEFRKAHLEAFQKKYGLKLGFMSPFIKASAYALQDQPVVNAVIEG--TD  189 (431)
Q Consensus       112 ~~Rk~ia~~m~~S~~~iP~~t~~~evD~t~l~~~r~~l~~~~~~~~g~k~t~~~~~ikA~a~Al~~~P~~N~~~~~--~~  189 (431)
                      +||+.||++|++|++++||+|++.|||+++|+++|+++++.+.+++|.|+||++||+||++.||++||.+|++|++  +.
T Consensus        83 ~~R~~ia~~M~~S~~~ip~~~~~~evd~t~l~~~r~~~~~~~~~~~g~kls~~~~likA~a~AL~~~P~~Na~~~~~~~~  162 (306)
T PRK11857         83 PIRKAIARAMTNSWSNVAYVNLVNEIDMTKLWDLRKSVKDPVLKTEGVKLTFLPFIAKAILIALKEFPIFAAKYDEATSE  162 (306)
T ss_pred             HHHHHHHHHHHHhhccCCeEEEEEEEEchHHHHHHHHHHHhhhhhcCCCCCHHHHHHHHHHHHHHhCcHhhEEEeCCCCE
Confidence            9999999999999999999999999999999999999998777777899999999999999999999999999984  48


Q ss_pred             eEecCcccEEEEEeecCCCCCCccCCcEEEEeecCCCccccccccCChhHHHHHHHHHHhhhhhcCCCCcccCCCceEEE
Q psy14345        190 IVYRDYVDISVGMGRNESNLPRWCFNGLLSGVLVLTEHLNGKYCVSSRPSYERHTTGWACYDRLNWNLAIEDSDGGTFTI  269 (431)
Q Consensus       190 i~~~~~v~igvav~~~~~~~~~~~~~gL~vpvi~~a~~~s~~l~~~~~~~i~~~~~~l~~~ar~~g~L~~~~~~ggTfti  269 (431)
                      |+++++|||||||++     +    +||++|||+|+|++|  +     .||++++++|+++|| +|+|+++||+||||||
T Consensus       163 i~~~~~vnigvAv~~-----~----~GL~vPVI~~a~~~s--l-----~eIa~~i~~l~~~Ar-~~kL~~~dl~ggTfTI  225 (306)
T PRK11857        163 LVYPDTLNLGIAVDT-----E----AGLMVPVIKNAQKLS--I-----VEIAKEISRLAKAAR-ERKIKPDEMKGGSFTI  225 (306)
T ss_pred             EEEcCCccEEEEEEC-----C----CCEEeCCcCCcCcCC--H-----HHHHHHHHHHHHHHH-cCCCChhhcCCccEEE
Confidence            999999999999999     8    999999999999999  9     999999999999999 9999999999999999


Q ss_pred             ecCCCCCccceeeccCCCcceeeeccceeEEEeeeCCeEEEeeeeeeeeeeeeeeeehHHHHHHHHHHHhHhhhhh
Q psy14345        270 SNGGVFGSLLGTPIINPPQSAILGMHGTFERPVAIKGQVVVKPMMYVALTYDHRLIDGREAVLFLQKEAHLEAFQK  345 (431)
Q Consensus       270 Sn~G~~G~~~~~pii~ppq~ail~vG~i~~~pv~~~g~~~~~~~m~lslt~DHRvIDg~~a~~fl~~lk~l~~~~~  345 (431)
                      ||+|+||+.+|+|||||||+||||+|+++++|++.+|+++++++|+++++||||+|||+.+++|++.++++.+.+.
T Consensus       226 SNlG~~G~~~~tpiIn~pq~aILgvG~i~~~pvv~~g~i~~r~~m~lslt~DHRviDGa~aa~Fl~~lk~~LE~p~  301 (306)
T PRK11857        226 TNYGSVGSLYGVPVINYPELAIAGVGAIIDKAIVKNGQIVAGKVMHLTVAADHRWIDGATIGRFASRVKELLEKPE  301 (306)
T ss_pred             eCCCCCCccceecccCCCccceeecccceEEeEEECCEEEEeeeeEEeEecchhhhCcHHHHHHHHHHHHHhcCHH
Confidence            9999999999999999999999999999999999999999999999999999999999999999999998776543

>COG0508 AceF Pyruvate/2-oxoglutarate dehydrogenase complex, dihydrolipoamide acyltransferase (E2) component, and related enzymes [Energy production and conversion]

Probab=100.00  E-value=3.9e-62  Score=500.73  Aligned_cols=319  Identities=37%  Similarity=0.554  Sum_probs=272.4

Q ss_pred             ccccceeeeeecCCCCeEecCceeEEEecCCCC-CCCCCC-CCCCCCCCCCCCCCCCCCCCCCCCCCCCC-chhhhcCCC
Q psy14345          8 QNNKKFLLLASLEDGATVKAGQQLFKIKPTATS-VVDWWS-SPEEGSSAQSRGYSSSSSSSLCCCSSPSP-SLCYSSAIE   84 (431)
Q Consensus         8 ~~~~~~~l~~~~~eGd~v~VG~~L~~Ie~~~~~-~a~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~sp~~-~lA~e~gId   84 (431)
                      +.++-.|..+.+++||+|+||++|++|+.++++ ++.+.+ +++....++...............++|++ +||+|+|||
T Consensus        50 ap~~G~l~~i~~~~G~~V~Vg~~I~~i~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~asP~~r~la~e~gid  129 (404)
T COG0508          50 APDAGVLAKILVEEGDTVPVGAVIARIEEEGADAPAAAEAPPEPAAAAPASAPATAASAAAGRVLASPAVRRLAREAGID  129 (404)
T ss_pred             CCCCeEEEEEeccCCCEEcCCCeEEEEecCCCcccccCcccCCccccCcCcccCccccccccccccCcchhhhhhhcCCC
Confidence            456667888999999999999999999987664 221111 01111111111111111111334567777 999999999


Q ss_pred             ccccCCCC-------CCCCccc------------------cCCCCceEEeccHHHHHHHHHHHHhcccceEEEEeeeccc
Q psy14345         85 AATVKLPP-------ADPTKEI------------------SGTRSEQRVKMNRMRQRIAQRLKEAQNVNAMLTTFNEIDM  139 (431)
Q Consensus        85 l~~v~gtg-------~dv~~~~------------------a~~~~~~~vpls~~Rk~ia~~m~~S~~~iP~~t~~~evD~  139 (431)
                      ++.+.|||       .|+....                  .....++++|++++||.|+++|.+|++++||+|.+.++|+
T Consensus       130 l~~v~gtG~~gri~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~rk~ia~~m~~s~~~~p~~t~~~evd~  209 (404)
T COG0508         130 LSKVKGTGPGGRITKKDVEAAVAEKAAAAAAPAPAAAAPASAAGEEERVPMSRIRKAIAERMVESKQTIPHLTLFNEVDM  209 (404)
T ss_pred             HHHcCCcCCCCceeccchhhhcccccccccccccccCCcccccCCceeeecccHHHHHHHHHHHHHhhCCeEEEEeeecH
Confidence            99999998       3442210                  1234677899999999999999999999999999999999


Q ss_pred             hHHHHHHHHHHHHHHhhcCCCCChhHHHHHHHHHHHhhCCccceeeeCC--eeEecCcccEEEEEeecCCCCCCccCCcE
Q psy14345        140 SAIIEFRKAHLEAFQKKYGLKLGFMSPFIKASAYALQDQPVVNAVIEGT--DIVYRDYVDISVGMGRNESNLPRWCFNGL  217 (431)
Q Consensus       140 t~l~~~r~~l~~~~~~~~g~k~t~~~~~ikA~a~Al~~~P~~N~~~~~~--~i~~~~~v~igvav~~~~~~~~~~~~~gL  217 (431)
                      +.|+++|+++++.+.++ |.|+||++||+||++.||++||.+|++|+++  .+++++++|||+||++     +    +||
T Consensus       210 t~l~~lr~~~~~~~~~~-g~klt~~~f~~kA~~~Alk~~P~~Na~~~~~~~~iv~~~~~~igiAv~t-----~----~GL  279 (404)
T COG0508         210 TKLMALRKKLKEEFEKK-GVKLTFLSFLVKAVVKALKKFPEVNASIDGDGEEIVYHKYVNIGIAVDT-----P----RGL  279 (404)
T ss_pred             HHHHHHHHHhhhhhccc-CccccHHHHHHHHHHHHHHhCCccceeeccccceEEEeccccEEEEEec-----C----CCe
Confidence            99999999999887766 9999999999999999999999999888865  8999999999999999     8    999


Q ss_pred             EEEeecCCCccccccccCChhHHHHHHHHHHhhhhhcCCCCcccCCCceEEEecCCCCCccceeeccCCCcceeeeccce
Q psy14345        218 LSGVLVLTEHLNGKYCVSSRPSYERHTTGWACYDRLNWNLAIEDSDGGTFTISNGGVFGSLLGTPIINPPQSAILGMHGT  297 (431)
Q Consensus       218 ~vpvi~~a~~~s~~l~~~~~~~i~~~~~~l~~~ar~~g~L~~~~~~ggTftiSn~G~~G~~~~~pii~ppq~ail~vG~i  297 (431)
                      ++|||+|+++++  +     .+|++++.+|..+|| +|+|+++||+||||||||+|+||...|+|||||||+||||+|++
T Consensus       280 vvpVir~a~~~~--~-----~~i~~~i~~la~~aR-~~kl~~~e~~ggtftisn~G~~g~~~~tpiin~Pq~aILgv~~~  351 (404)
T COG0508         280 VVPVIRDADKKS--L-----AEIAKEIKDLAKKAR-DGKLTPEEMQGGTFTISNLGMFGSLMFTPIINPPQVAILGVGAI  351 (404)
T ss_pred             EecceeecccCC--H-----HHHHHHHHHHHHHHH-hcCcCHHHhCCceEEeecCCccccceecccccChhHheeecccc
Confidence            999999999999  9     999999999999999 99999999999999999999999999999999999999999999


Q ss_pred             eEEEeeeCCeEEEeeeeeeeeeeeeeeeehHHHHHHHHHHHhHhhhh
Q psy14345        298 FERPVAIKGQVVVKPMMYVALTYDHRLIDGREAVLFLQKEAHLEAFQ  344 (431)
Q Consensus       298 ~~~pv~~~g~~~~~~~m~lslt~DHRvIDg~~a~~fl~~lk~l~~~~  344 (431)
                      .+||++.++++.++++|+++++||||+|||..+.+|+..++++.+.+
T Consensus       352 ~~rpv~~~~~i~~~~mm~lsls~DHRviDGa~aa~Fl~~ik~~le~p  398 (404)
T COG0508         352 EERPVVVGGEIVVRPMMYLSLSYDHRVIDGAEAARFLVALKELLEDP  398 (404)
T ss_pred             ccCceEecCceeeEeeEeecccccccccccHHHHHHHHHHHHHhcCh
Confidence            99999999999999999999999999999999999999999876654

>PRK11854 aceF pyruvate dehydrogenase dihydrolipoyltransacetylase; Validated

Probab=100.00  E-value=3.6e-60  Score=511.77  Aligned_cols=321  Identities=22%  Similarity=0.313  Sum_probs=264.2

Q ss_pred             cccccceeeeeecCCCCeEecCceeEEEecCCCCCCCCC-----CCCCCC--CCCCCCCCCCC---C-----CCCCCCCC
Q psy14345          7 KQNNKKFLLLASLEDGATVKAGQQLFKIKPTATSVVDWW-----SSPEEG--SSAQSRGYSSS---S-----SSSLCCCS   71 (431)
Q Consensus         7 ~~~~~~~~l~~~~~eGd~v~VG~~L~~Ie~~~~~~a~~~-----~~~~~~--~~~~~~~~~~~---~-----~~~~~~~~   71 (431)
                      ....+-.|..+++++||+|++|++|+.|+.++++++...     +++++.  ..+.+.+..++   .     ......++
T Consensus       251 ~ap~~G~l~~i~~~~G~~v~~G~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a  330 (633)
T PRK11854        251 PAPFAGTVKEIKVNVGDKVKTGSLIMRFEVEGAAPAAAPAKQEAAAPAPAAAKAEAPAAAPAAKAEGKSEFAENDAYVHA  330 (633)
T ss_pred             eCCCCeEEEEEecCCCCEecCCCEEEEEecCCCCccccccccCCCCCCccccccCCCCCCCcccccccccccccCCccCC
Confidence            445566788899999999999999999986543211100     001000  00001000000   0     00112346


Q ss_pred             CCCC-chhhhcCCCccccCCCCC-------CCCcc-----------cc---CC-----------------CCceEEeccH
Q psy14345         72 SPSP-SLCYSSAIEAATVKLPPA-------DPTKE-----------IS---GT-----------------RSEQRVKMNR  112 (431)
Q Consensus        72 sp~~-~lA~e~gIdl~~v~gtg~-------dv~~~-----------~a---~~-----------------~~~~~vpls~  112 (431)
                      +|.+ +||+|+||||+.++|||.       |+...           .+   ..                 +.++++||++
T Consensus       331 sP~aR~lA~e~gidl~~v~gtG~~GrI~~~DV~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~  410 (633)
T PRK11854        331 TPLVRRLAREFGVNLAKVKGTGRKGRILKEDVQAYVKDAVKRAEAAPAAAAAGGGGPGLLPWPKVDFSKFGEIEEVELGR  410 (633)
T ss_pred             CchhHHHHHHhCCChhhcCCCCCCCeEeHHHHHHHhhccccccccCCcccccccccccccccccccccccCcceEEeCch
Confidence            7777 999999999999999992       22110           00   00                 0134689999


Q ss_pred             HHHHHHHHHHHhcccceEEEEeeeccchHHHHHHHHHHHHH-HhhcCCCCChhHHHHHHHHHHHhhCCccceeee--CCe
Q psy14345        113 MRQRIAQRLKEAQNVNAMLTTFNEIDMSAIIEFRKAHLEAF-QKKYGLKLGFMSPFIKASAYALQDQPVVNAVIE--GTD  189 (431)
Q Consensus       113 ~Rk~ia~~m~~S~~~iP~~t~~~evD~t~l~~~r~~l~~~~-~~~~g~k~t~~~~~ikA~a~Al~~~P~~N~~~~--~~~  189 (431)
                      |||.||++|++||+++||||++.++|+|+|+++|+++++.. .++.|.|+||++||+||+++||++||+||++|+  +++
T Consensus       411 ~r~~ia~~m~~S~~~ip~~~~~~evD~t~l~~~rk~~~~~~~~~~~g~k~t~~~~likAva~Al~~~P~~Na~~~~~~~~  490 (633)
T PRK11854        411 IQKISGANLHRNWVMIPHVTQFDKADITELEAFRKQQNAEAEKRKLGVKITPLVFIMKAVAAALEQMPRFNSSLSEDGQR  490 (633)
T ss_pred             HHHHHHHHHHHHHhcCCeEEEEeEEEcHHHHHHHHHHhhhhhhhcccCcccHHHHHHHHHHHHHHhCCHhhEEEecCCCE
Confidence            99999999999999999999999999999999999988543 334588999999999999999999999999996  468


Q ss_pred             eEecCcccEEEEEeecCCCCCCccCCcEEEEeecCCCccccccccCChhHHHHHHHHHHhhhhhcCCCCcccCCCceEEE
Q psy14345        190 IVYRDYVDISVGMGRNESNLPRWCFNGLLSGVLVLTEHLNGKYCVSSRPSYERHTTGWACYDRLNWNLAIEDSDGGTFTI  269 (431)
Q Consensus       190 i~~~~~v~igvav~~~~~~~~~~~~~gL~vpvi~~a~~~s~~l~~~~~~~i~~~~~~l~~~ar~~g~L~~~~~~ggTfti  269 (431)
                      +++++++||||||++     +    +||++|||+++++++  +     .+|+++++++++++| +|+|+++|++||||||
T Consensus       491 i~~~~~vnigiAV~~-----~----~GL~vPvi~~a~~~s--l-----~~i~~~~~~l~~~ar-~~~l~~~~~~ggTftI  553 (633)
T PRK11854        491 LTLKKYVNIGIAVDT-----P----NGLVVPVFKDVNKKG--I-----IELSRELMDISKKAR-DGKLTAGDMQGGCFTI  553 (633)
T ss_pred             EEEecccCEEEEEEC-----C----CceEEeeECCCccCC--H-----HHHHHHHHHHHHHHH-cCCCChHHcCCcEEEE
Confidence            999999999999999     8    999999999999999  9     999999999999999 9999999999999999


Q ss_pred             ecCCCCCccceeeccCCCcceeeeccceeEEEeeeCCeEEEeeeeeeeeeeeeeeeehHHHHHHHHHHHhHhhhh
Q psy14345        270 SNGGVFGSLLGTPIINPPQSAILGMHGTFERPVAIKGQVVVKPMMYVALTYDHRLIDGREAVLFLQKEAHLEAFQ  344 (431)
Q Consensus       270 Sn~G~~G~~~~~pii~ppq~ail~vG~i~~~pv~~~g~~~~~~~m~lslt~DHRvIDg~~a~~fl~~lk~l~~~~  344 (431)
                      ||+||||+++|+|||||||+||||+|++.++|++.+|+++.+++|+++++||||+|||..+++||+.++++.+.+
T Consensus       554 SnlG~~G~~~~tpii~ppq~aIlgvG~i~~~p~~~~~~~~~r~~m~lslt~DHRviDGa~aa~Fl~~lk~~LE~p  628 (633)
T PRK11854        554 SSIGGLGTTHFTPIVNAPEVAILGVSKSAMEPVWNGKEFAPRLMLPLSLSYDHRVIDGADGARFITIINDRLSDI  628 (633)
T ss_pred             eCCcccCCcceeccccCCceEEEEcccceEEEEEECCEEEEEEEEEEeEEccchhcchHHHHHHHHHHHHHHhCH
Confidence            999999999999999999999999999999999988999999999999999999999999999999999876654

>PF00198 2-oxoacid_dh: 2-oxoacid dehydrogenases acyltransferase (catalytic domain); InterPro: IPR001078 This domain is found in the lipoamide acyltransferase component of the branched-chain alpha-keto acid dehydrogenase complex 2

Probab=100.00  E-value=1.9e-60  Score=455.44  Aligned_cols=224  Identities=39%  Similarity=0.563  Sum_probs=199.7

Q ss_pred             CCceEEeccHHHHHHHHHHHHhcccceEEEEeeeccchHHHHHHHHHHHHHHhhcCCCCChhHHHHHHHHHHHhhCCccc
Q psy14345        103 RSEQRVKMNRMRQRIAQRLKEAQNVNAMLTTFNEIDMSAIIEFRKAHLEAFQKKYGLKLGFMSPFIKASAYALQDQPVVN  182 (431)
Q Consensus       103 ~~~~~vpls~~Rk~ia~~m~~S~~~iP~~t~~~evD~t~l~~~r~~l~~~~~~~~g~k~t~~~~~ikA~a~Al~~~P~~N  182 (431)
                      ++++++|++++||+||++|++|++++||+|++.+||+|+|+++|+++++...+. +.|+|+++|++||++.||++||.+|
T Consensus         2 ~~~~~~~ls~~r~~ia~~m~~S~~~iP~~~~~~evd~t~l~~~r~~l~~~~~~~-~~kis~~~~likAva~AL~~~P~lN   80 (231)
T PF00198_consen    2 GEETRVPLSGMRKAIAKRMTESLQTIPHFTLSREVDVTALLALRKELKEAGEEP-GGKISITDFLIKAVALALKEHPELN   80 (231)
T ss_dssp             SSCEEEES-HHHHHHHHHHHHHHHHS-EEEEEEEEETHHHHHHHHHHHHHHHHT-TST-THHHHHHHHHHHHHHHSGGGS
T ss_pred             CCcEEEECcHHHHHHHHHHHHHHhcCCeEEEEEEEEHHHHHHHHHHhhhHHHhh-ccCCChhHeeeehHhhhhHHHHHhc
Confidence            467899999999999999999999999999999999999999999999876554 4599999999999999999999999


Q ss_pred             eeeeCCe-eEecCcccEEEEEeecCCCCCCccCCcEEEEeecCCCccccccccCChhHHHHHHHHHHhhhhhcCCCCccc
Q psy14345        183 AVIEGTD-IVYRDYVDISVGMGRNESNLPRWCFNGLLSGVLVLTEHLNGKYCVSSRPSYERHTTGWACYDRLNWNLAIED  261 (431)
Q Consensus       183 ~~~~~~~-i~~~~~v~igvav~~~~~~~~~~~~~gL~vpvi~~a~~~s~~l~~~~~~~i~~~~~~l~~~ar~~g~L~~~~  261 (431)
                      ++|+++. |++++++||||||++     +    +||++|||+|++++|  +     .||++++++++++|| +|+|+++|
T Consensus        81 a~~~~~~~i~~~~~vnIgvAV~~-----~----~GL~vPVIr~a~~~s--l-----~eIa~e~~~l~~~ar-~g~l~~~d  143 (231)
T PF00198_consen   81 ASWDGDGEIVLYERVNIGVAVDT-----P----DGLVVPVIRDADKKS--L-----AEIAKELRDLAERAR-EGKLTPED  143 (231)
T ss_dssp             EEEETTSEEEEESS--EEEEEEE-----T----TEEEEEEETTGGGS---H-----HHHHHHHHHHHHHHH-TT---GGG
T ss_pred             cccccccceeeeeeEEEEEEEEc-----C----CCEEEEEEeCCcccc--H-----HHHHHHHhhhhccch-hhhhhhhh
Confidence            9999876 999999999999999     8    999999999999999  9     999999999999999 99999999


Q ss_pred             CCCceEEEecCCCCCccceeeccCCCcceeeeccceeEEEeeeCCeEEEeeeeeeeeeeeeeeeehHHHHHHHHHHHhHh
Q psy14345        262 SDGGTFTISNGGVFGSLLGTPIINPPQSAILGMHGTFERPVAIKGQVVVKPMMYVALTYDHRLIDGREAVLFLQKEAHLE  341 (431)
Q Consensus       262 ~~ggTftiSn~G~~G~~~~~pii~ppq~ail~vG~i~~~pv~~~g~~~~~~~m~lslt~DHRvIDg~~a~~fl~~lk~l~  341 (431)
                      ++||||||||+|+||++.|+|||||||+||||+|+++++|++.+|+++++++|+++++||||++||.++++|++.++++.
T Consensus       144 ~~g~TftisNlG~~g~~~~~pii~~pq~ail~vG~i~~~p~~~~~~~~~~~~~~lslt~DHRvidG~~aa~Fl~~l~~~l  223 (231)
T PF00198_consen  144 LQGGTFTISNLGMFGVESFTPIINPPQVAILGVGAIRDRPVVEDGEVVVRPVMNLSLTFDHRVIDGAEAARFLKDLKELL  223 (231)
T ss_dssp             GSS-SEEEEEGGGTT-SCEE----TTSSEEEEEEEEEEEEEEETTCEEEEEEEEEEEEEETTTS-HHHHHHHHHHHHHHH
T ss_pred             hhccceeeeecCCCCcceeEccCCcccceEEEecceEEEEEEEeccceeeEEEEeEEeccceEEcHHHHHHHHHHHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999876


Q ss_pred             hhh
Q psy14345        342 AFQ  344 (431)
Q Consensus       342 ~~~  344 (431)
                      +.+
T Consensus       224 e~p  226 (231)
T PF00198_consen  224 ENP  226 (231)
T ss_dssp             HST
T ss_pred             hCH
Confidence            654

3.1 from EC, which catalyses the overall conversion of alpha-keto acids to acyl-CoA and carbon dioxide []. It contains multiple copies of three enzymatic components: branched-chain alpha-keto acid decarboxylase (E1), lipoamide acyltransferase (E2) and lipoamide dehydrogenase (E3). The domain is also found in the dihydrolipoamide succinyltransferase component of the 2-oxoglutarate dehydrogenase complex 2.3.1.61 from EC. These proteins contain one to three copies of a lipoyl binding domain followed by the catalytic domain.; GO: 0016746 transferase activity, transferring acyl groups, 0008152 metabolic process; PDB: 1EAF_A 1EAA_A 1DPD_A 1EAE_A 1DPC_A 1EAB_A 1DPB_A 1EAC_A 1EAD_A 2II5_H ....

>PRK11855 dihydrolipoamide acetyltransferase; Reviewed

Probab=100.00  E-value=3.5e-58  Score=489.68  Aligned_cols=321  Identities=26%  Similarity=0.356  Sum_probs=263.5

Q ss_pred             ccccccceeeeeecCCCCeEecCceeEEEecCCCCC--C--CCCCCC--CCCC--CCCCCC----CCCC-CCC--CCCC-
Q psy14345          6 LKQNNKKFLLLASLEDGATVKAGQQLFKIKPTATSV--V--DWWSSP--EEGS--SAQSRG----YSSS-SSS--SLCC-   69 (431)
Q Consensus         6 ~~~~~~~~~l~~~~~eGd~v~VG~~L~~Ie~~~~~~--a--~~~~~~--~~~~--~~~~~~----~~~~-~~~--~~~~-   69 (431)
                      +..-.+-++..+.+++||.|++|++|+.|+..++.+  +  ++.+++  ....  ...+..    ..+. ...  +... 
T Consensus       164 v~Ap~~G~v~~i~~~~G~~v~~G~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  243 (547)
T PRK11855        164 IPSPVAGVVKEIKVKVGDKVSVGSLLVVIEVAAAAPAAAAAPAAAAPAAAAAAAPAPAPAAAAAPAAAAPAAAAAPGKAP  243 (547)
T ss_pred             ecCCCCeEEEEEecCCCCEecCCCEEEEEecCCCccccccCCCCCCCccccccCCCCCCcccccCCccccccccccCCcc
Confidence            334455677888999999999999999998653211  0  000000  0000  000000    0000 000  1122 


Q ss_pred             CCCCCC-chhhhcCCCccccCCCCC-------CCCcc--------c-------cC----C-------------CCceEEe
Q psy14345         70 CSSPSP-SLCYSSAIEAATVKLPPA-------DPTKE--------I-------SG----T-------------RSEQRVK  109 (431)
Q Consensus        70 ~~sp~~-~lA~e~gIdl~~v~gtg~-------dv~~~--------~-------a~----~-------------~~~~~vp  109 (431)
                      .++|.+ +||+|+||||+.|+|||.       |+...        .       +.    .             +.++++|
T Consensus       244 ~asP~aR~lA~e~gidl~~v~gtG~~GrI~~~DV~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  323 (547)
T PRK11855        244 HASPAVRRLARELGVDLSQVKGTGKKGRITKEDVQAFVKGAMSAAAAAAAAAAAAGGGGLGLLPWPKVDFSKFGEIETKP  323 (547)
T ss_pred             cCChHHHHHHHHhCCCHHHCcCCCCCCcEeHHHHHHHhhccccccccccccccccccccccccCCccccccccCcceEEe
Confidence            456776 999999999999999992       22110        0       00    0             0135689


Q ss_pred             ccHHHHHHHHHHHHhcccceEEEEeeeccchHHHHHHHHHHHHHHhhcCCCCChhHHHHHHHHHHHhhCCccceeee--C
Q psy14345        110 MNRMRQRIAQRLKEAQNVNAMLTTFNEIDMSAIIEFRKAHLEAFQKKYGLKLGFMSPFIKASAYALQDQPVVNAVIE--G  187 (431)
Q Consensus       110 ls~~Rk~ia~~m~~S~~~iP~~t~~~evD~t~l~~~r~~l~~~~~~~~g~k~t~~~~~ikA~a~Al~~~P~~N~~~~--~  187 (431)
                      |+++||.||++|++|++++||||++.+||+|+|+++|+++++.+++. |.|+||++||+||+++||++||+||++|+  +
T Consensus       324 ls~~r~~ia~~m~~S~~~iP~~~~~~evd~t~l~~~r~~~~~~~~~~-g~k~s~~~~likAv~~al~~~P~ln~~~~~~~  402 (547)
T PRK11855        324 LSRIKKISAANLHRSWVTIPHVTQFDEADITDLEALRKQLKKEAEKA-GVKLTMLPFFIKAVVAALKEFPVFNASLDEDG  402 (547)
T ss_pred             CcHHHHHHHHHHHHHhhcCCeEEEEEEEEChHHHHHHHHhhhhhhhc-CCCCCHHHHHHHHHHHHHHhCcHhhEEEccCC
Confidence            99999999999999999999999999999999999999998766554 89999999999999999999999999998  5


Q ss_pred             CeeEecCcccEEEEEeecCCCCCCccCCcEEEEeecCCCccccccccCChhHHHHHHHHHHhhhhhcCCCCcccCCCceE
Q psy14345        188 TDIVYRDYVDISVGMGRNESNLPRWCFNGLLSGVLVLTEHLNGKYCVSSRPSYERHTTGWACYDRLNWNLAIEDSDGGTF  267 (431)
Q Consensus       188 ~~i~~~~~v~igvav~~~~~~~~~~~~~gL~vpvi~~a~~~s~~l~~~~~~~i~~~~~~l~~~ar~~g~L~~~~~~ggTf  267 (431)
                      +.+++++++|||+||++     +    +||++|||+|+++++  +     .+|+++++++++++| +|+|.++|++||||
T Consensus       403 ~~i~~~~~i~i~~Av~~-----~----~gl~vpvi~~~~~~s--l-----~~i~~~~~~l~~~ar-~~~l~~~~~~ggtf  465 (547)
T PRK11855        403 DELTYKKYFNIGFAVDT-----P----NGLVVPVIKDVDKKS--L-----LEIAREIAELAKKAR-DGKLKPDDMQGGCF  465 (547)
T ss_pred             CEEEEeCCccEEEEEEC-----C----CccEeCCcCCCccCC--H-----HHHHHHHHHHHHHHH-cCCCChHhcCCceE
Confidence            68999999999999999     8    899999999999999  9     999999999999999 99999999999999


Q ss_pred             EEecCCCCCccceeeccCCCcceeeeccceeEEEeeeCCeEEEeeeeeeeeeeeeeeeehHHHHHHHHHHHhHhhhh
Q psy14345        268 TISNGGVFGSLLGTPIINPPQSAILGMHGTFERPVAIKGQVVVKPMMYVALTYDHRLIDGREAVLFLQKEAHLEAFQ  344 (431)
Q Consensus       268 tiSn~G~~G~~~~~pii~ppq~ail~vG~i~~~pv~~~g~~~~~~~m~lslt~DHRvIDg~~a~~fl~~lk~l~~~~  344 (431)
                      ||||+||||+++|+|+|||||+||||+|++.++|++.+|++..+++|+++++||||+|||..+++||+.++++.+++
T Consensus       466 tiSnlg~~g~~~~tpii~~pq~ail~~G~~~~~pv~~~~~~~~r~~m~lslt~DHRviDG~~aa~Fl~~l~~~le~p  542 (547)
T PRK11855        466 TISSLGGIGGTAFTPIINAPEVAILGVGKSQMKPVWDGKEFVPRLMLPLSLSYDHRVIDGATAARFTNYLKQLLADP  542 (547)
T ss_pred             EEeCCccccccceecCcCCCceEEEEcccceEeeeeeCCEEEEEeEEEEeEEccchhcCcHHHHHHHHHHHHHHhCH
Confidence            99999999999999999999999999999999998888899999999999999999999999999999999876654

>PRK11856 branched-chain alpha-keto acid dehydrogenase subunit E2; Reviewed

Probab=100.00  E-value=9.6e-57  Score=464.23  Aligned_cols=312  Identities=30%  Similarity=0.441  Sum_probs=258.1

Q ss_pred             cceeeeeecCCCCeEecCceeEEEecCCC-CC--CCC--CCCCCCCCCC--CC--CCCCCCC--C-CCC--CCCCCCCC-
Q psy14345         11 KKFLLLASLEDGATVKAGQQLFKIKPTAT-SV--VDW--WSSPEEGSSA--QS--RGYSSSS--S-SSL--CCCSSPSP-   75 (431)
Q Consensus        11 ~~~~l~~~~~eGd~v~VG~~L~~Ie~~~~-~~--a~~--~~~~~~~~~~--~~--~~~~~~~--~-~~~--~~~~sp~~-   75 (431)
                      +-.+..+.+++|+.|++|++|++|+..++ +.  +++  ..++...+.+  .+  .+.++..  . ...  ...++|.+ 
T Consensus        53 ~G~i~~~~v~~G~~v~~G~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~asP~~r  132 (411)
T PRK11856         53 AGTVAKLLVEEGDVVPVGSVIAVIEEEGEAEAAAAAEAAPEAPAPEPAPAAAAAAAAAPAAAAAPAAPAAAAAKASPAVR  132 (411)
T ss_pred             CeEEEEEecCCCCEeCCCCEEEEEecCCCCccccccCCCCCCCCCCCCCCCCCCCCCCCCcccCcccccCCcccCChHHH
Confidence            34566779999999999999999986543 21  110  0001000000  00  0000000  0 000  11356666 


Q ss_pred             chhhhcCCCccccCCCCC-------CCCcccc-------------------CCCCceEEeccHHHHHHHHHHHHhcccce
Q psy14345         76 SLCYSSAIEAATVKLPPA-------DPTKEIS-------------------GTRSEQRVKMNRMRQRIAQRLKEAQNVNA  129 (431)
Q Consensus        76 ~lA~e~gIdl~~v~gtg~-------dv~~~~a-------------------~~~~~~~vpls~~Rk~ia~~m~~S~~~iP  129 (431)
                      +||+|+||||+.++|+|.       |+.+...                   ....++.+|++++||.||++|++||.++|
T Consensus       133 ~la~~~gidl~~i~gsG~~Gri~~~Dv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~ia~~m~~s~~~~P  212 (411)
T PRK11856        133 KLARELGVDLSTVKGSGPGGRITKEDVEAAAAAAAPAAAAAAAAAAAPPAAAAEGEERVPLSGMRKAIAKRMVESKREIP  212 (411)
T ss_pred             HHHHHcCCCHHHCcCCCCCCeEEHHHHHHHHhcccccCCCCCCCCCCCCcccCCCceEeeCcHHHHHHHHHHHHHhhcCC
Confidence            999999999999999982       3321100                   01125678999999999999999999999


Q ss_pred             EEEEeeeccchHHHHHHHHHHHHHHhhcCCCCChhHHHHHHHHHHHhhCCccceeeeCCeeEecCcccEEEEEeecCCCC
Q psy14345        130 MLTTFNEIDMSAIIEFRKAHLEAFQKKYGLKLGFMSPFIKASAYALQDQPVVNAVIEGTDIVYRDYVDISVGMGRNESNL  209 (431)
Q Consensus       130 ~~t~~~evD~t~l~~~r~~l~~~~~~~~g~k~t~~~~~ikA~a~Al~~~P~~N~~~~~~~i~~~~~v~igvav~~~~~~~  209 (431)
                      ||+++.+||+|+|+++|+++++.     +.++||++||+||+++||++||+||++|+++.+++++++|||+||++     
T Consensus       213 ~~~~~~~idvt~l~~~~k~~~~~-----~~~ls~~~~~ikav~~Al~~~P~~n~~~~~~~i~~~~~i~i~~av~~-----  282 (411)
T PRK11856        213 HFTLTDEVDVTALLALRKQLKAI-----GVKLTVTDFLIKAVALALKKFPELNASWDDDAIVLKKYVNIGIAVAT-----  282 (411)
T ss_pred             eEEEEEEEEhHHHHHHHHHHHhh-----ccCccHHHHHHHHHHHHHHhCcHhheEEeCCEEEEcCCcCEEEEEEC-----
Confidence            99999999999999999998643     47899999999999999999999999999999999999999999999     


Q ss_pred             CCccCCcEEEEeecCCCccccccccCChhHHHHHHHHHHhhhhhcCCCCcccCCCceEEEecCCCCCccceeeccCCCcc
Q psy14345        210 PRWCFNGLLSGVLVLTEHLNGKYCVSSRPSYERHTTGWACYDRLNWNLAIEDSDGGTFTISNGGVFGSLLGTPIINPPQS  289 (431)
Q Consensus       210 ~~~~~~gL~vpvi~~a~~~s~~l~~~~~~~i~~~~~~l~~~ar~~g~L~~~~~~ggTftiSn~G~~G~~~~~pii~ppq~  289 (431)
                      +    +||++|||+++++++  |     .+|+++++++++++| +|+|+++|++||||||||+||||...|+|+|||||+
T Consensus       283 ~----~gl~~pvi~~~~~~s--l-----~ei~~~~~~~~~~ar-~~~l~~~~~~~gtftiSn~G~~g~~~~~Pii~~p~~  350 (411)
T PRK11856        283 D----GGLIVPVIRDADKKS--L-----FELAREIKDLAEKAR-EGKLKPEELQGGTFTISNLGMFGGDYFTPIINPPEV  350 (411)
T ss_pred             C----CCeEeCcCCCcccCC--H-----HHHHHHHHHHHHHHH-cCCCCHHHhCCCeEEEeCCCccCCCceECccCCCce
Confidence            8    999999999999999  9     999999999999999 999999999999999999999999999999999999


Q ss_pred             eeeeccceeEEEeeeCCeEEEeeeeeeeeeeeeeeeehHHHHHHHHHHHhHhhhh
Q psy14345        290 AILGMHGTFERPVAIKGQVVVKPMMYVALTYDHRLIDGREAVLFLQKEAHLEAFQ  344 (431)
Q Consensus       290 ail~vG~i~~~pv~~~g~~~~~~~m~lslt~DHRvIDg~~a~~fl~~lk~l~~~~  344 (431)
                      |||++|++.++|++.+|+++++++|+++++||||++||.++++|++.++++.+++
T Consensus       351 ail~iG~~~~~~~~~~g~~~~~~~m~lslt~DHRviDG~~aa~Fl~~l~~~le~p  405 (411)
T PRK11856        351 AILGVGAIVERPVVVDGEIVVRKVMPLSLSFDHRVIDGADAARFLKALKELLENP  405 (411)
T ss_pred             EEEEcccceEEEEEECCEEEEEEEEEEeEEeehhhcCcHHHHHHHHHHHHHHhCH
Confidence            9999999999999999999999999999999999999999999999999876654

>KOG0558|consensus

Probab=100.00  E-value=6.3e-55  Score=420.98  Aligned_cols=309  Identities=25%  Similarity=0.321  Sum_probs=262.3

Q ss_pred             eeeeecCCCCeEecCceeEEEecCCCCCCCCCCCCCCCCCCCCCC-CCCCCCCCCCCCCCCCC-chhhhcCCCccccCCC
Q psy14345         14 LLLASLEDGATVKAGQQLFKIKPTATSVVDWWSSPEEGSSAQSRG-YSSSSSSSLCCCSSPSP-SLCYSSAIEAATVKLP   91 (431)
Q Consensus        14 ~l~~~~~eGd~v~VG~~L~~Ie~~~~~~a~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~sp~~-~lA~e~gIdl~~v~gt   91 (431)
                      +-++|.+.||..+||+||++++.++..--++.   ..+++..+-+ ...........-++|++ +||+|++|||+.|.||
T Consensus       118 v~ki~h~~ddia~VGk~Lvd~eve~~~ds~e~---s~es~~vs~~~~~~~~~~~~~tlaTPaVRrlA~e~~idla~v~gt  194 (474)
T KOG0558|consen  118 VKKIYHSPDDIAKVGKPLVDLEVEDSQDSPED---SDESPAVSLGESKQGEESLLKTLATPAVRRLAKENGIDLAEVTGT  194 (474)
T ss_pred             EEEEeeCchhhhHhCcceeeeeeccCcCCccc---CCccccccCCCCchhhhhccccccCHHHHHHHHHhCCceEeeecc
Confidence            44679999999999999999998765311111   1111111111 11111112334467887 9999999999999999


Q ss_pred             CCCCCc------------------------------ccc-----CCCCceEEeccHHHHHHHHHHHHhcccceEEEEeee
Q psy14345         92 PADPTK------------------------------EIS-----GTRSEQRVKMNRMRQRIAQRLKEAQNVNAMLTTFNE  136 (431)
Q Consensus        92 g~dv~~------------------------------~~a-----~~~~~~~vpls~~Rk~ia~~m~~S~~~iP~~t~~~e  136 (431)
                      |.|..-                              .++     .-..+..+|+.|.+|+|.+.|+++ ..||||.+..|
T Consensus       195 GKdGRvLKeDvL~fl~q~pg~~~~~~~~~~a~~~~~~ps~~a~~~~~~Dkt~plrGf~rAMvKtMt~a-lkiPHF~y~dE  273 (474)
T KOG0558|consen  195 GKDGRVLKEDVLRFLGQVPGFVTDPSPSEHAVIPGPSPSTKASSNLEADKTVPLRGFSRAMVKTMTEA-LKIPHFGYVDE  273 (474)
T ss_pred             CCCCcchHHHHHHHhccCCCCccCCCCceeecCCCCCCcccccCcccccceeechhHHHHHHHHHHHH-hcCCccccccc
Confidence            944210                              000     012356789999999999999999 58999999999


Q ss_pred             ccchHHHHHHHHHHHHHHhhcCCCCChhHHHHHHHHHHHhhCCccceeeeC--CeeEecCcccEEEEEeecCCCCCCccC
Q psy14345        137 IDMSAIIEFRKAHLEAFQKKYGLKLGFMSPFIKASAYALQDQPVVNAVIEG--TDIVYRDYVDISVGMGRNESNLPRWCF  214 (431)
Q Consensus       137 vD~t~l~~~r~~l~~~~~~~~g~k~t~~~~~ikA~a~Al~~~P~~N~~~~~--~~i~~~~~v~igvav~~~~~~~~~~~~  214 (431)
                      ||++.|+++|+++++...++ |.|+||++||+||+++||.+||.+|+++++  ..|++..++|||+|++|     |    
T Consensus       274 In~~sLvklr~elk~~a~e~-~IKltfmPf~iKaaSlaL~kyP~vNss~d~~~e~ii~K~sHNIgvAmdT-----~----  343 (474)
T KOG0558|consen  274 INCDSLVKLRQELKENAKER-GIKLTFMPFFIKAASLALLKYPIVNSSFDEESENIILKGSHNIGVAMDT-----E----  343 (474)
T ss_pred             cChHHHHHHHHHHhhhhhhc-CceeeehHHHHHHHHHHHhhCccccchhhhhhhhhhhhcccceeEEecC-----C----
Confidence            99999999999999765444 899999999999999999999999999985  57999999999999999     9    


Q ss_pred             CcEEEEeecCCCccccccccCChhHHHHHHHHHHhhhhhcCCCCcccCCCceEEEecCCCCCccceeeccCCCcceeeec
Q psy14345        215 NGLLSGVLVLTEHLNGKYCVSSRPSYERHTTGWACYDRLNWNLAIEDSDGGTFTISNGGVFGSLLGTPIINPPQSAILGM  294 (431)
Q Consensus       215 ~gL~vpvi~~a~~~s~~l~~~~~~~i~~~~~~l~~~ar~~g~L~~~~~~ggTftiSn~G~~G~~~~~pii~ppq~ail~v  294 (431)
                      .||+||.|+|++.+|  +     .||++++.+|.+.++ +|+|+++|+.|||||+||+|.+|.++..|+|+|||+||.++
T Consensus       344 ~GLvVPNiKN~q~~s--i-----~eIakeLnrLq~~g~-~~qls~~D~t~GTftLSNIG~IGGtf~~P~i~~PeVAIgAl  415 (474)
T KOG0558|consen  344 QGLVVPNIKNVQSLS--I-----FEIAKELNRLQELGA-NGQLSPEDLTGGTFTLSNIGAIGGTFASPVIMPPEVAIGAL  415 (474)
T ss_pred             CceeccCccccchhh--H-----HHHHHHHHHHHHhhh-cCCcChhhccCceEEeeecccccccccCcccccchhhhhhc
Confidence            999999999999999  9     999999999999999 99999999999999999999999999999999999999999


Q ss_pred             cceeEEEeee-CCeEEEeeeeeeeeeeeeeeeehHHHHHHHHHHHhHhhhh
Q psy14345        295 HGTFERPVAI-KGQVVVKPMMYVALTYDHRLIDGREAVLFLQKEAHLEAFQ  344 (431)
Q Consensus       295 G~i~~~pv~~-~g~~~~~~~m~lslt~DHRvIDg~~a~~fl~~lk~l~~~~  344 (431)
                      |+|+.-|... .|++.....|.++++.|||+|||+..++|-..+|++.+++
T Consensus       416 Grie~vPrFnkk~~V~~a~IM~VswsADHRViDGaTmarFsn~WK~YlE~P  466 (474)
T KOG0558|consen  416 GRIEKVPRFNKKGEVYPASIMMVSWSADHRVIDGATMARFSNQWKEYLENP  466 (474)
T ss_pred             cccccccccCCCCCEEEeEEEEEEeecCceeeccHHHHHHHHHHHHHhhCH
Confidence            9999999986 5799999999999999999999999999999999987765

>KOG0557|consensus

Probab=100.00  E-value=1.4e-54  Score=435.55  Aligned_cols=316  Identities=25%  Similarity=0.305  Sum_probs=260.4

Q ss_pred             cccceeeeeecCCC-CeEecCceeEEEecCCCCC------CC-------------CCCCCCCCCCCCCCCCCCC-----C
Q psy14345          9 NNKKFLLLASLEDG-ATVKAGQQLFKIKPTATSV------VD-------------WWSSPEEGSSAQSRGYSSS-----S   63 (431)
Q Consensus         9 ~~~~~~l~~~~~eG-d~v~VG~~L~~Ie~~~~~~------a~-------------~~~~~~~~~~~~~~~~~~~-----~   63 (431)
                      -+.-||-+|-++|| ..|+||++||.|-+.+++.      .+             ++++|..+..+++...+..     .
T Consensus        87 ~ddGyLAKILi~EGskdvpVGk~Iaiive~e~di~~~k~~k~~~s~~~~~~~~~~~~app~~~~~~~Ps~~~~~~~~~p~  166 (470)
T KOG0557|consen   87 QDDGYLAKILIEEGSKDVPVGKPIAIIVEDEDDIAAFKLPKDEASSGEQSPSAAPPPAPPKVAKPEAPSAPSKPSTSQPV  166 (470)
T ss_pred             ccCCeeeeeeeccCcccccCCCceEEEecccccHHHhhccccccccccCCcccCCCCCCCcccccCCCCCCccccccccC
Confidence            35568899999999 9999999999998443321      11             0111111111111111000     0


Q ss_pred             CCCC--CCCCCCCC-chhhhcCCCccccCCCC-------CCCCc-----------c-------------ccCCCCceEEe
Q psy14345         64 SSSL--CCCSSPSP-SLCYSSAIEAATVKLPP-------ADPTK-----------E-------------ISGTRSEQRVK  109 (431)
Q Consensus        64 ~~~~--~~~~sp~~-~lA~e~gIdl~~v~gtg-------~dv~~-----------~-------------~a~~~~~~~vp  109 (431)
                      .+..  +..++|.. +||.|+|+|++.+.|||       .|+.+           +             ....+.++++|
T Consensus       167 ~~~~~~r~~asP~Ak~la~e~~l~ls~i~gtGP~Gri~k~Di~~~v~~~~~k~~~~~~~~~~~~~~~a~~~~~~~~~diP  246 (470)
T KOG0557|consen  167 KAKNGGRVFASPLAKKLAEEKGLELSSIPGTGPHGRILKGDIEKHVGSGKKKSAKAPKASAPPPAPAAPPVSLPGYEDIP  246 (470)
T ss_pred             CcCCCCceecChHHHHHHHHhCCccccCcCcCCCceeehhhHHHhhcccccccccCCCccCCCcCccCCcCCCCcccccc
Confidence            0010  12233444 99999999999999998       22221           0             01223478999


Q ss_pred             ccHHHHHHHHHHHHhcccceEEEEeeeccchHHHHHHHHHHHHHHhhcCCCCChhHHHHHHHHHHHhhCCccceeeeC-C
Q psy14345        110 MNRMRQRIAQRLKEAQNVNAMLTTFNEIDMSAIIEFRKAHLEAFQKKYGLKLGFMSPFIKASAYALQDQPVVNAVIEG-T  188 (431)
Q Consensus       110 ls~~Rk~ia~~m~~S~~~iP~~t~~~evD~t~l~~~r~~l~~~~~~~~g~k~t~~~~~ikA~a~Al~~~P~~N~~~~~-~  188 (431)
                      ++.||+.|++||.+|+++|||+|++.+++++.|+++|+.+|  + .+.+.++|+++|++||.+.||+++|++|++|.+ .
T Consensus       247 ~s~mr~viakrl~eSk~~IPh~yvt~~~~~d~ll~~r~~ln--~-~~~~~~vsvndliiKAaa~al~~vPevNs~w~~~~  323 (470)
T KOG0557|consen  247 VSNMRRVIAKRLLESKQTIPHYYVTVDVNLDKLLALREKLN--F-EKSIKKVSLNDLIAKAAALALAKVPEVNSSWMDEL  323 (470)
T ss_pred             cchhhhhhhhhhhhhhcCCCeEEEeeeeehHHHHHHHHHhh--h-cccCcccchhHHHHHHHHHHHhcCCcccceecCCc
Confidence            99999999999999999999999999999999999999998  2 234789999999999999999999999999987 8


Q ss_pred             eeEecCcccEEEEEeecCCCCCCccCCcEEEEeecCCCccccccccCChhHHHHHHHHHHhhhhhcCCCCcccCCCceEE
Q psy14345        189 DIVYRDYVDISVGMGRNESNLPRWCFNGLLSGVLVLTEHLNGKYCVSSRPSYERHTTGWACYDRLNWNLAIEDSDGGTFT  268 (431)
Q Consensus       189 ~i~~~~~v~igvav~~~~~~~~~~~~~gL~vpvi~~a~~~s~~l~~~~~~~i~~~~~~l~~~ar~~g~L~~~~~~ggTft  268 (431)
                      .|+++++|||++||++     +    +||++|+|+|++.++  +     .+|++.+++|+.+|| .|+|.|+|++|||||
T Consensus       324 ~i~~~~~VdisvAVat-----~----~GLitPii~na~~kg--l-----~~is~~vkel~~kAr-~~kL~Pee~qgGtft  386 (470)
T KOG0557|consen  324 VIRQLSSVDISVAVAT-----P----NGLITPIIQNADAKG--L-----STISSKVKELAQKAR-EGKLQPEEFQGGTFT  386 (470)
T ss_pred             cccccCcCChhheeec-----c----Ccccchhhhhccccc--H-----HHHHHHHHHHHHHHh-hccCCcccccCCcee
Confidence            8999999999999999     8    999999999999999  9     999999999999999 999999999999999


Q ss_pred             EecCCCCCccceeeccCCCcceeeeccceeEEEeee---CCeEEEeeeeeeeeeeeeeeeehHHHHHHHHHHHhHhhhh
Q psy14345        269 ISNGGVFGSLLGTPIINPPQSAILGMHGTFERPVAI---KGQVVVKPMMYVALTYDHRLIDGREAVLFLQKEAHLEAFQ  344 (431)
Q Consensus       269 iSn~G~~G~~~~~pii~ppq~ail~vG~i~~~pv~~---~g~~~~~~~m~lslt~DHRvIDg~~a~~fl~~lk~l~~~~  344 (431)
                      |||+||||++.|+.||||||.|||++|..++..|..   +++.....+|++++++|||+|||+.+++||+.|+++.+++
T Consensus       387 iSNLGmf~V~~F~AiinPpq~~ILavg~~~~~~v~d~~~~~~~~~~~~m~VTls~DhRvvdga~aa~Fl~~fk~~~EnP  465 (470)
T KOG0557|consen  387 LSNLGMFGVDMFTAIINPPQADILAVGAATPSVVPDANGPEKFSVINAMTVTLSADHRVVDGAVAARFLDEFKENLENP  465 (470)
T ss_pred             HhhccCcCccccccccCCchhhhhhcccCccccccCCCcccccceeeeeEEEEecCcceecHHHHHHHHHHHHHHhhCH
Confidence            999999999999999999999999999999887752   3578999999999999999999999999999999887765

>PRK12270 kgd alpha-ketoglutarate decarboxylase; Reviewed

Probab=100.00  E-value=3.4e-52  Score=445.77  Aligned_cols=226  Identities=18%  Similarity=0.228  Sum_probs=212.6

Q ss_pred             CceEEeccHHHHHHHHHHHHhcccceEEEEeeeccchHHHHHHHHHHHHHHhhcCCCCChhHHHHHHHHHHHhhCCccce
Q psy14345        104 SEQRVKMNRMRQRIAQRLKEAQNVNAMLTTFNEIDMSAIIEFRKAHLEAFQKKYGLKLGFMSPFIKASAYALQDQPVVNA  183 (431)
Q Consensus       104 ~~~~vpls~~Rk~ia~~m~~S~~~iP~~t~~~evD~t~l~~~r~~l~~~~~~~~g~k~t~~~~~ikA~a~Al~~~P~~N~  183 (431)
                      ..+.+|++|++++||++|..|+ ++|++|...+|+++.|+++|+.+|+.+.+.+|.|+||||+|+||+++||++||.||+
T Consensus       114 ~~~~~~LrG~a~aiAkNM~aSL-~vPtaTsvr~Ip~k~L~dnR~~In~~l~r~~GgKVSFThlI~kAvv~AL~~~P~mNa  192 (1228)
T PRK12270        114 EDEVTPLRGAAAAVAKNMDASL-EVPTATSVRAVPAKLLIDNRIVINNHLKRTRGGKVSFTHLIGYALVQALKAFPNMNR  192 (1228)
T ss_pred             CcceeecccHHHHHHHHHHhhh-ccCceeeeecccHHHHHHHHHHHHHHhhhccCCcccHHHHHHHHHHHHHHhCchhhc
Confidence            4578899999999999999996 699999999999999999999999999999999999999999999999999999999


Q ss_pred             eee--CC--eeEecCcccEEEEEeecCCCCCCccCCcEEEEeecCCCccccccccCChhHHHHHHHHHHhhhhhcCCCCc
Q psy14345        184 VIE--GT--DIVYRDYVDISVGMGRNESNLPRWCFNGLLSGVLVLTEHLNGKYCVSSRPSYERHTTGWACYDRLNWNLAI  259 (431)
Q Consensus       184 ~~~--~~--~i~~~~~v~igvav~~~~~~~~~~~~~gL~vpvi~~a~~~s~~l~~~~~~~i~~~~~~l~~~ar~~g~L~~  259 (431)
                      +|+  ++  .|+++++||||+||+++.    ++|.+||+||+|++||+|+  |     .+|++++.++++||| +|+|++
T Consensus       193 sy~~~DGKp~iv~~~~VNlGiAVdl~~----~dGsRgLVVPvIK~Ad~l~--f-----~ef~~ay~dLV~KAR-~gKLt~  260 (1228)
T PRK12270        193 HYAEVDGKPTLVTPAHVNLGLAIDLPK----KDGSRQLVVPAIKGAETMD--F-----AQFWAAYEDIVRRAR-DGKLTA  260 (1228)
T ss_pred             eeeccCCCceeeccCCcceEEEEecCC----CCCCcceeeccccccccCC--H-----HHHHHHHHHHHHHHH-cCCCCH
Confidence            997  44  499999999999999942    2355899999999999999  9     999999999999999 999999


Q ss_pred             ccCCCceEEEecCCCCCccceeeccCCCcceeeeccceeEEEeeeC------CeEEEeeeeeeeeeeeeeeeehHHHHHH
Q psy14345        260 EDSDGGTFTISNGGVFGSLLGTPIINPPQSAILGMHGTFERPVAIK------GQVVVKPMMYVALTYDHRLIDGREAVLF  333 (431)
Q Consensus       260 ~~~~ggTftiSn~G~~G~~~~~pii~ppq~ail~vG~i~~~pv~~~------g~~~~~~~m~lslt~DHRvIDg~~a~~f  333 (431)
                      +||+||||||||+||||+.+|+|||||||+||||||++...|++.+      +++.++++|++++|||||+|||+++.+|
T Consensus       261 eD~~GgTFTISN~G~iGt~~ftPILnppQ~AILGVGAi~~p~~f~gas~~~l~~i~i~kvMtLTlTyDHRVIdGA~sg~F  340 (1228)
T PRK12270        261 DDFQGTTISLTNPGGIGTVHSVPRLMKGQGAIIGVGAMEYPAEFQGASEERLAELGISKVMTLTSTYDHRIIQGAESGEF  340 (1228)
T ss_pred             HHhCCceEEEecCCcccccceeeeecCCceEEEeccccccCceecCcccccccccceeeeEEeeeeccceeeccHhHHHH
Confidence            9999999999999999999999999999999999999998888743      5899999999999999999999999999


Q ss_pred             HHHHHhHhh
Q psy14345        334 LQKEAHLEA  342 (431)
Q Consensus       334 l~~lk~l~~  342 (431)
                      |+.++++.+
T Consensus       341 L~~ik~lLe  349 (1228)
T PRK12270        341 LRTIHQLLL  349 (1228)
T ss_pred             HHHHHHHHh
Confidence            999998655

>PF00198 2-oxoacid_dh: 2-oxoacid dehydrogenases acyltransferase (catalytic domain); InterPro: IPR001078 This domain is found in the lipoamide acyltransferase component of the branched-chain alpha-keto acid dehydrogenase complex 2

Probab=99.89  E-value=7e-23  Score=196.28  Aligned_cols=106  Identities=38%  Similarity=0.536  Sum_probs=90.4

Q ss_pred             eeeehHHHHHHHHHHHhHhhhhhhcccccCCcchHHHHHHHHhhcCCccceeeeCCe-eEEcCCcceEEEEecCCCeeec
Q psy14345        323 RLIDGREAVLFLQKEAHLEAFQKKYGLKLGFMSPFIKASAYALQDQPVVNAVIEGTD-IVYRDYVDISVAVATPKGLVVP  401 (431)
Q Consensus       323 RvIDg~~a~~fl~~lk~l~~~~~~~~~klt~~~~~~ka~~~aL~~~P~~Na~~~~~~-i~~~~~vnigvAV~~~~GL~vP  401 (431)
                      +.||.+.+.++++++++...   ..+.|+|+++|++||++.||++||.+|++|+++. |++++++||||||++++||+||
T Consensus        34 ~evd~t~l~~~r~~l~~~~~---~~~~kis~~~~likAva~AL~~~P~lNa~~~~~~~i~~~~~vnIgvAV~~~~GL~vP  110 (231)
T PF00198_consen   34 REVDVTALLALRKELKEAGE---EPGGKISITDFLIKAVALALKEHPELNASWDGDGEIVLYERVNIGVAVDTPDGLVVP  110 (231)
T ss_dssp             EEEETHHHHHHHHHHHHHHH---HTTST-THHHHHHHHHHHHHHHSGGGSEEEETTSEEEEESS--EEEEEEETTEEEEE
T ss_pred             EEEEHHHHHHHHHHhhhHHH---hhccCCChhHeeeehHhhhhHHHHHhccccccccceeeeeeEEEEEEEEcCCCEEEE
Confidence            34788999999998875322   2345999999999999999999999999999887 9999999999999999999999


Q ss_pred             eecCcccCCHHHHHHHHHHHHHHHHcCCCC
Q psy14345        402 VIRNVEAMNFADIELTIAALGEKARTGKYT  431 (431)
Q Consensus       402 vi~~a~~~~l~~ia~~~~~l~~~ar~g~L~  431 (431)
                      ||||++++|+.||++++++|++|||+|+|+
T Consensus       111 VIr~a~~~sl~eIa~e~~~l~~~ar~g~l~  140 (231)
T PF00198_consen  111 VIRDADKKSLAEIAKELRDLAERAREGKLT  140 (231)
T ss_dssp             EETTGGGS-HHHHHHHHHHHHHHHHTT---
T ss_pred             EEeCCccccHHHHHHHHhhhhccchhhhhh
Confidence            999999999999999999999999999985

3.1 from EC, which catalyses the overall conversion of alpha-keto acids to acyl-CoA and carbon dioxide []. It contains multiple copies of three enzymatic components: branched-chain alpha-keto acid decarboxylase (E1), lipoamide acyltransferase (E2) and lipoamide dehydrogenase (E3). The domain is also found in the dihydrolipoamide succinyltransferase component of the 2-oxoglutarate dehydrogenase complex 2.3.1.61 from EC. These proteins contain one to three copies of a lipoyl binding domain followed by the catalytic domain.; GO: 0016746 transferase activity, transferring acyl groups, 0008152 metabolic process; PDB: 1EAF_A 1EAA_A 1DPD_A 1EAE_A 1DPC_A 1EAB_A 1DPB_A 1EAC_A 1EAD_A 2II5_H ....

>PRK14843 dihydrolipoamide acetyltransferase; Provisional

Probab=99.89  E-value=7e-23  Score=206.65  Aligned_cols=105  Identities=23%  Similarity=0.368  Sum_probs=95.8

Q ss_pred             eehHHHHHHHHHHHhHhhhhhhcccccCCcchHHHHHHHHhhcCCccceeeeC--CeeEEcCCcceEEEEecCCCeeece
Q psy14345        325 IDGREAVLFLQKEAHLEAFQKKYGLKLGFMSPFIKASAYALQDQPVVNAVIEG--TDIVYRDYVDISVAVATPKGLVVPV  402 (431)
Q Consensus       325 IDg~~a~~fl~~lk~l~~~~~~~~~klt~~~~~~ka~~~aL~~~P~~Na~~~~--~~i~~~~~vnigvAV~~~~GL~vPv  402 (431)
                      +|.+.+..+++++++.  +.++.|.|+|+++||+||++.||++||.+|++|++  +.|+++++|||||||++++||+|||
T Consensus       150 vd~t~l~~~r~~~~~~--~~~~~~~kls~~~~likA~a~AL~~~P~~Na~~~~~~~~i~~~~~vnigvAV~~~~GL~vPV  227 (347)
T PRK14843        150 VDMTEMLALRKKVLEP--IMEATGKKTTVTDLLSLAVVKTLMKHPYINASLTEDGKTIITHNYVNLAMAVGMDNGLMTPV  227 (347)
T ss_pred             EEchHHHHHHHHHHHH--HHhhcCCcccHHHHHHHHHHHHHHhCcceeEEEecCCCeEEEecccceEEEEecCCCeEeCc
Confidence            7888999999888742  22345789999999999999999999999999974  5699999999999999999999999


Q ss_pred             ecCcccCCHHHHHHHHHHHHHHHHcCCCC
Q psy14345        403 IRNVEAMNFADIELTIAALGEKARTGKYT  431 (431)
Q Consensus       403 i~~a~~~~l~~ia~~~~~l~~~ar~g~L~  431 (431)
                      |||||+|||.||++++++|+++||+|+|+
T Consensus       228 Ir~a~~~sl~eIa~~i~~l~~~Ar~~kL~  256 (347)
T PRK14843        228 VYNAEKMSLSELVVAFKDVIGRTLDGKLA  256 (347)
T ss_pred             CCCcccCCHHHHHHHHHHHHHHHHcCCCC
Confidence            99999999999999999999999999986

>PRK11857 dihydrolipoamide acetyltransferase; Reviewed

Probab=99.88  E-value=1.4e-22  Score=201.32  Aligned_cols=107  Identities=30%  Similarity=0.435  Sum_probs=97.1

Q ss_pred             eeeehHHHHHHHHHHHhHhhhhhhcccccCCcchHHHHHHHHhhcCCccceeeeC--CeeEEcCCcceEEEEecCCCeee
Q psy14345        323 RLIDGREAVLFLQKEAHLEAFQKKYGLKLGFMSPFIKASAYALQDQPVVNAVIEG--TDIVYRDYVDISVAVATPKGLVV  400 (431)
Q Consensus       323 RvIDg~~a~~fl~~lk~l~~~~~~~~~klt~~~~~~ka~~~aL~~~P~~Na~~~~--~~i~~~~~vnigvAV~~~~GL~v  400 (431)
                      +.||.+...++++++++.  +.+++|.|+|+++||+||++.||++||.+|++|++  +.|+++++|||||||++++||+|
T Consensus       106 ~evd~t~l~~~r~~~~~~--~~~~~g~kls~~~~likA~a~AL~~~P~~Na~~~~~~~~i~~~~~vnigvAv~~~~GL~v  183 (306)
T PRK11857        106 NEIDMTKLWDLRKSVKDP--VLKTEGVKLTFLPFIAKAILIALKEFPIFAAKYDEATSELVYPDTLNLGIAVDTEAGLMV  183 (306)
T ss_pred             EEEEchHHHHHHHHHHHh--hhhhcCCCCCHHHHHHHHHHHHHHhCcHhhEEEeCCCCEEEEcCCccEEEEEECCCCEEe
Confidence            347888999999888742  22345899999999999999999999999999974  48999999999999999999999


Q ss_pred             ceecCcccCCHHHHHHHHHHHHHHHHcCCCC
Q psy14345        401 PVIRNVEAMNFADIELTIAALGEKARTGKYT  431 (431)
Q Consensus       401 Pvi~~a~~~~l~~ia~~~~~l~~~ar~g~L~  431 (431)
                      |||||||+|||.||++++++|+++||+|+|+
T Consensus       184 PVI~~a~~~sl~eIa~~i~~l~~~Ar~~kL~  214 (306)
T PRK11857        184 PVIKNAQKLSIVEIAKEISRLAKAARERKIK  214 (306)
T ss_pred             CCcCCcCcCCHHHHHHHHHHHHHHHHcCCCC
Confidence            9999999999999999999999999999985

>PLN02226 2-oxoglutarate dehydrogenase E2 component

Probab=99.88  E-value=1.3e-22  Score=209.75  Aligned_cols=113  Identities=52%  Similarity=0.765  Sum_probs=101.3

Q ss_pred             eeeeeeeeeeeeeeehHHHHHHHHHHHhHhhhhhhcccccCCcchHHHHHHHHhhcCCccceeeeCCeeEEcCCcceEEE
Q psy14345        312 PMMYVALTYDHRLIDGREAVLFLQKEAHLEAFQKKYGLKLGFMSPFIKASAYALQDQPVVNAVIEGTDIVYRDYVDISVA  391 (431)
Q Consensus       312 ~~m~lslt~DHRvIDg~~a~~fl~~lk~l~~~~~~~~~klt~~~~~~ka~~~aL~~~P~~Na~~~~~~i~~~~~vnigvA  391 (431)
                      |++++...     +|.+...+|++++++.  +.+++|.|+|+++||+||++.||++||.+|++|+++.|+++++||||||
T Consensus       258 Ph~t~~~e-----vDvt~L~~lR~~l~~~--~~~~~g~klS~~~~liKAva~AL~~~P~lNa~~~~~~i~~~~~vnIGvA  330 (463)
T PLN02226        258 ALLTTFNE-----VDMTNLMKLRSQYKDA--FYEKHGVKLGLMSGFIKAAVSALQHQPVVNAVIDGDDIIYRDYVDISIA  330 (463)
T ss_pred             CEEEEEEE-----EEcHHHHHHHHHHHhh--hhhhcCCcccHHHHHHHHHHHHHHhCCHhheEEcCCEEEEeCcccEEEE
Confidence            45555444     6778999999888742  2234588999999999999999999999999999999999999999999


Q ss_pred             EecCCCeeeceecCcccCCHHHHHHHHHHHHHHHHcCCCC
Q psy14345        392 VATPKGLVVPVIRNVEAMNFADIELTIAALGEKARTGKYT  431 (431)
Q Consensus       392 V~~~~GL~vPvi~~a~~~~l~~ia~~~~~l~~~ar~g~L~  431 (431)
                      |++++||+||||||||+|+|.||++++++|++|||+|+|+
T Consensus       331 V~t~~GLvVPVIr~ad~~sl~eIa~ei~~L~~kAR~gkL~  370 (463)
T PLN02226        331 VGTSKGLVVPVIRGADKMNFAEIEKTINGLAKKANEGTIS  370 (463)
T ss_pred             EECCCCEEeccCCCcccCCHHHHHHHHHHHHHHHHcCCCC
Confidence            9999999999999999999999999999999999999986

>TIGR01347 sucB 2-oxoglutarate dehydrogenase complex dihydrolipoamide succinyltransferase (E2 component)

Probab=99.88  E-value=2.8e-22  Score=206.10  Aligned_cols=106  Identities=56%  Similarity=0.801  Sum_probs=97.9

Q ss_pred             eeehHHHHHHHHHHHhHhhhhhhcccccCCcchHHHHHHHHhhcCCccceeeeCCeeEEcCCcceEEEEecCCCeeecee
Q psy14345        324 LIDGREAVLFLQKEAHLEAFQKKYGLKLGFMSPFIKASAYALQDQPVVNAVIEGTDIVYRDYVDISVAVATPKGLVVPVI  403 (431)
Q Consensus       324 vIDg~~a~~fl~~lk~l~~~~~~~~~klt~~~~~~ka~~~aL~~~P~~Na~~~~~~i~~~~~vnigvAV~~~~GL~vPvi  403 (431)
                      .+|.+....+++.+++.  +.++.|.|+|+|+||+||++.||++||.+|++|+++.|++++++||||||++++||+||||
T Consensus       205 evd~t~l~~~r~~~~~~--~~~~~~~kls~~~~likA~a~AL~~~P~~Na~~~~~~i~~~~~vnIgvAv~~~~GL~vPVI  282 (403)
T TIGR01347       205 EVDMSAVMELRKRYKEE--FEKKHGVKLGFMSFFVKAVVAALKRFPEVNAEIDGDDIVYKDYYDISVAVSTDRGLVVPVV  282 (403)
T ss_pred             EEEHHHHHHHHHHHHhh--hHhhcCCCcCHHHHHHHHHHHHHHhCcHhheEEcCCEEEEcCCCCeEEEEECCCCeEECcC
Confidence            47888999999888742  2334588999999999999999999999999999999999999999999999999999999


Q ss_pred             cCcccCCHHHHHHHHHHHHHHHHcCCCC
Q psy14345        404 RNVEAMNFADIELTIAALGEKARTGKYT  431 (431)
Q Consensus       404 ~~a~~~~l~~ia~~~~~l~~~ar~g~L~  431 (431)
                      ||||+|||.||++++++|++|||+|+|+
T Consensus       283 r~ad~~sl~eIa~~~~~l~~~ar~gkL~  310 (403)
T TIGR01347       283 RNADRMSFADIEKEIADLGKKARDGKLT  310 (403)
T ss_pred             CCcccCCHHHHHHHHHHHHHHHHcCCCC
Confidence            9999999999999999999999999986

dihydrolipoamide acetyltransferase. The seed for this model includes mitochondrial and Gram-negative bacterial forms. Mycobacterial candidates are highly derived, differ in having and extra copy of the lipoyl-binding domain at the N-terminus. They score below the trusted cutoff, but above the noise cutoff and above all examples of dihydrolipoamide acetyltransferase.

>PTZ00144 dihydrolipoamide succinyltransferase; Provisional

Probab=99.88  E-value=2.6e-22  Score=206.11  Aligned_cols=113  Identities=55%  Similarity=0.769  Sum_probs=101.0

Q ss_pred             eeeeeeeeeeeeeeehHHHHHHHHHHHhHhhhhhhcccccCCcchHHHHHHHHhhcCCccceeeeCCeeEEcCCcceEEE
Q psy14345        312 PMMYVALTYDHRLIDGREAVLFLQKEAHLEAFQKKYGLKLGFMSPFIKASAYALQDQPVVNAVIEGTDIVYRDYVDISVA  391 (431)
Q Consensus       312 ~~m~lslt~DHRvIDg~~a~~fl~~lk~l~~~~~~~~~klt~~~~~~ka~~~aL~~~P~~Na~~~~~~i~~~~~vnigvA  391 (431)
                      ||+++...     ||.+...++++++++.  ..+++|.|+|+++||+||++.||++||.+|++|+++.|++++++|||||
T Consensus       213 Ph~t~~~e-----id~t~l~~~r~~~~~~--~~~~~g~klS~~~~liKAva~AL~~~P~~Na~~~~~~i~~~~~vnIgvA  285 (418)
T PTZ00144        213 AMLTTFNE-----CDMSALMELRKEYKDD--FQKKHGVKLGFMSAFVKASTIALKKMPIVNAYIDGDEIVYRNYVDISVA  285 (418)
T ss_pred             CeEEEEEE-----EechHHHHHHHHHHhh--hhhhcCCcccHHHHHHHHHHHHHHhChHhheEEcCCEEEEecCCCEEEE
Confidence            45555443     6778999999888742  2234588999999999999999999999999999989999999999999


Q ss_pred             EecCCCeeeceecCcccCCHHHHHHHHHHHHHHHHcCCCC
Q psy14345        392 VATPKGLVVPVIRNVEAMNFADIELTIAALGEKARTGKYT  431 (431)
Q Consensus       392 V~~~~GL~vPvi~~a~~~~l~~ia~~~~~l~~~ar~g~L~  431 (431)
                      |++++||+||||||||+|||.||++++++|++|||+|+|+
T Consensus       286 V~~~~GL~vPVI~~ad~~sl~eIa~ei~~L~~~ar~g~L~  325 (418)
T PTZ00144        286 VATPTGLVVPVIRNCENKSFAEIEKELADLAEKARNNKLT  325 (418)
T ss_pred             EECCCCEEEccCCCcccCCHHHHHHHHHHHHHHHHcCCCC
Confidence            9999999999999999999999999999999999999985

>PRK05704 dihydrolipoamide succinyltransferase; Validated

Probab=99.87  E-value=3.2e-22  Score=206.04  Aligned_cols=106  Identities=49%  Similarity=0.768  Sum_probs=97.7

Q ss_pred             eeehHHHHHHHHHHHhHhhhhhhcccccCCcchHHHHHHHHhhcCCccceeeeCCeeEEcCCcceEEEEecCCCeeecee
Q psy14345        324 LIDGREAVLFLQKEAHLEAFQKKYGLKLGFMSPFIKASAYALQDQPVVNAVIEGTDIVYRDYVDISVAVATPKGLVVPVI  403 (431)
Q Consensus       324 vIDg~~a~~fl~~lk~l~~~~~~~~~klt~~~~~~ka~~~aL~~~P~~Na~~~~~~i~~~~~vnigvAV~~~~GL~vPvi  403 (431)
                      .+|.+....|++++++.  +.++.|.|+|+++||+||++.||++||.+|++|+++.|++++++||||||++++||+||||
T Consensus       209 evd~~~l~~~r~~~~~~--~~~~~~~kls~~~~likA~a~AL~~~P~~Na~~~~~~i~~~~~~nIgiAv~~~~GLivPVI  286 (407)
T PRK05704        209 EVDMTPVMDLRKQYKDA--FEKKHGVKLGFMSFFVKAVVEALKRYPEVNASIDGDDIVYHNYYDIGIAVGTPRGLVVPVL  286 (407)
T ss_pred             EEeHHHHHHHHHHHHhh--hHhhcCCCcCHHHHHHHHHHHHHHhCcHhhcEEcCCeEEEcCCCCeEEEEECCCceEeCcC
Confidence            37888999999888742  2234578999999999999999999999999999999999999999999999999999999


Q ss_pred             cCcccCCHHHHHHHHHHHHHHHHcCCCC
Q psy14345        404 RNVEAMNFADIELTIAALGEKARTGKYT  431 (431)
Q Consensus       404 ~~a~~~~l~~ia~~~~~l~~~ar~g~L~  431 (431)
                      ||||+|||.||++++++|++|||+|+|+
T Consensus       287 ~~a~~~sl~eIa~~~~~l~~~ar~g~L~  314 (407)
T PRK05704        287 RDADQLSFAEIEKKIAELAKKARDGKLS  314 (407)
T ss_pred             CCcccCCHHHHHHHHHHHHHHHHcCCCC
Confidence            9999999999999999999999999985

>TIGR02927 SucB_Actino 2-oxoglutarate dehydrogenase, E2 component, dihydrolipoamide succinyltransferase

Probab=99.87  E-value=5.3e-22  Score=213.19  Aligned_cols=106  Identities=31%  Similarity=0.474  Sum_probs=96.4

Q ss_pred             eeehHHHHHHHHHHHhHhhhhhhcccccCCcchHHHHHHHHhhcCCccceeeeC--CeeEEcCCcceEEEEecCCCeeec
Q psy14345        324 LIDGREAVLFLQKEAHLEAFQKKYGLKLGFMSPFIKASAYALQDQPVVNAVIEG--TDIVYRDYVDISVAVATPKGLVVP  401 (431)
Q Consensus       324 vIDg~~a~~fl~~lk~l~~~~~~~~~klt~~~~~~ka~~~aL~~~P~~Na~~~~--~~i~~~~~vnigvAV~~~~GL~vP  401 (431)
                      .+|.+.+..|++.+++.  +.+++|.|||+++||+||++.||++||.+|++|++  +.|+++++|||||||++++||+||
T Consensus       384 evdvt~l~~~R~~l~~~--~~~~~~~kls~~~~iiKA~a~AL~~~P~~Na~~~~~~~~i~~~~~vnigvAv~t~~GL~vP  461 (590)
T TIGR02927       384 EVDMTKIAALRARAKAA--FAEKEGVNLTFLPFFAKAVIDALKAHPNVNASYNADTKEITYHAAEHLGFAVDTDAGLLSP  461 (590)
T ss_pred             EEEcHHHHHHHHHHHhh--hHHhcCCcccHHHHHHHHHHHHHHhCCHhheEEecCCCEEEEeCCccEEEEEECCCCcEec
Confidence            37788999999988742  22335789999999999999999999999999964  589999999999999999999999


Q ss_pred             eecCcccCCHHHHHHHHHHHHHHHHcCCCC
Q psy14345        402 VIRNVEAMNFADIELTIAALGEKARTGKYT  431 (431)
Q Consensus       402 vi~~a~~~~l~~ia~~~~~l~~~ar~g~L~  431 (431)
                      ||||+|+|||.||++++++|++|||+|+|+
T Consensus       462 vIk~a~~~sl~~ia~~i~~l~~kAr~gkL~  491 (590)
T TIGR02927       462 VIHNAGDLSLGEIAKAIADIAARARNGKLK  491 (590)
T ss_pred             ccCCcccCCHHHHHHHHHHHHHHHHcCCCC
Confidence            999999999999999999999999999996

This model represents an Actinobacterial clade of E2 enzyme, a component of the 2-oxoglutarate dehydrogenase complex involved in the TCA cycle. These proteins have multiple domains including the catalytic domain (pfam00198), one or two biotin domains (pfam00364) and an E3-component binding domain (pfam02817).

>PLN02744 dihydrolipoyllysine-residue acetyltransferase component of pyruvate dehydrogenase complex

Probab=99.87  E-value=6.5e-22  Score=208.39  Aligned_cols=106  Identities=26%  Similarity=0.324  Sum_probs=97.4

Q ss_pred             eeehHHHHHHHHHHHhHhhhhhhcccccCCcchHHHHHHHHhhcCCccceeeeCCeeEEcCCcceEEEEecCCCeeecee
Q psy14345        324 LIDGREAVLFLQKEAHLEAFQKKYGLKLGFMSPFIKASAYALQDQPVVNAVIEGTDIVYRDYVDISVAVATPKGLVVPVI  403 (431)
Q Consensus       324 vIDg~~a~~fl~~lk~l~~~~~~~~~klt~~~~~~ka~~~aL~~~P~~Na~~~~~~i~~~~~vnigvAV~~~~GL~vPvi  403 (431)
                      .+|.+.+..|+++++...  .+..|.|+|+++||+||++.||++||.+|++|+++.|+++++|||||||++++||+||||
T Consensus       340 evdvt~L~~lR~~l~~~~--~~~~g~kls~~~~liKA~a~AL~~~P~lNa~~~~~~i~~~~~vnIgvAV~t~~GL~vPVI  417 (539)
T PLN02744        340 DTRVDKLMALRSQLNSLQ--EASGGKKISVNDLVIKAAALALRKVPQCNSSWTDDYIRQYHNVNINVAVQTENGLYVPVV  417 (539)
T ss_pred             EEEcHHHHHHHHHHHHHh--hhcccCccCHHHHHHHHHHHHHHhCcHhheeeccCcEEEeCCcceEEEEECCCCeEECcC
Confidence            367789999998887432  233478999999999999999999999999999999999999999999999999999999


Q ss_pred             cCcccCCHHHHHHHHHHHHHHHHcCCCC
Q psy14345        404 RNVEAMNFADIELTIAALGEKARTGKYT  431 (431)
Q Consensus       404 ~~a~~~~l~~ia~~~~~l~~~ar~g~L~  431 (431)
                      ||||+|||.||++++++|++|||+|+|+
T Consensus       418 r~ad~~sl~eIa~ei~~L~~kAr~~kL~  445 (539)
T PLN02744        418 KDADKKGLSTIAEEVKQLAQKARENSLK  445 (539)
T ss_pred             CCcccCCHHHHHHHHHHHHHHHHcCCCC
Confidence            9999999999999999999999999995

>TIGR01349 PDHac_trf_mito pyruvate dehydrogenase complex dihydrolipoamide acetyltransferase, long form

Probab=99.86  E-value=1.9e-21  Score=202.08  Aligned_cols=104  Identities=33%  Similarity=0.407  Sum_probs=96.6

Q ss_pred             eeehHHHHHHHHHHHhHhhhhhhcccccCCcchHHHHHHHHhhcCCccceeeeCCeeEEcCCcceEEEEecCCCeeecee
Q psy14345        324 LIDGREAVLFLQKEAHLEAFQKKYGLKLGFMSPFIKASAYALQDQPVVNAVIEGTDIVYRDYVDISVAVATPKGLVVPVI  403 (431)
Q Consensus       324 vIDg~~a~~fl~~lk~l~~~~~~~~~klt~~~~~~ka~~~aL~~~P~~Na~~~~~~i~~~~~vnigvAV~~~~GL~vPvi  403 (431)
                      .+|.+.+..|++.+++..   .+ |.|+|+++||+||++.||++||.+|++|+++.|+++++|||||||++++||+||||
T Consensus       238 evd~t~l~~~r~~~~~~~---~~-~~klt~~~~l~kA~a~AL~~~P~~Na~~~~~~i~~~~~vnigvAv~~~~GL~vPvi  313 (435)
T TIGR01349       238 ECNVDKLLALRKELNAMA---SE-VYKLSVNDFIIKASALALREVPEANSSWTDNFIRRYKNVDISVAVATPDGLITPIV  313 (435)
T ss_pred             EEEhHHHHHHHHHHHhhh---hc-CCcccHHHHHHHHHHHHHHhCcHhheEEeCCeEEEeCCeeEEEEEECCCCeEECCC
Confidence            378899999998887431   12 78999999999999999999999999999999999999999999999999999999


Q ss_pred             cCcccCCHHHHHHHHHHHHHHHHcCCCC
Q psy14345        404 RNVEAMNFADIELTIAALGEKARTGKYT  431 (431)
Q Consensus       404 ~~a~~~~l~~ia~~~~~l~~~ar~g~L~  431 (431)
                      ||+|+|||.||++++++|+++||+|+|+
T Consensus       314 ~~a~~~sl~eia~~i~~l~~~ar~~~L~  341 (435)
T TIGR01349       314 RNADAKGLSTISNEIKDLAKRARNNKLK  341 (435)
T ss_pred             CCcccCCHHHHHHHHHHHHHHHhcCCCC
Confidence            9999999999999999999999999985

This model represents one of several closely related clades of the dihydrolipoamide acetyltransferase subunit of the pyruvate dehydrogenase complex. It includes sequences from mitochondria and from alpha and beta branches of the proteobacteria, as well as from some other bacteria. Sequences from Gram-positive bacteria are not included. The non-enzymatic homolog protein X, which serves as an E3 component binding protein, falls within the clade phylogenetically but is rejected by its low score.

>PLN02528 2-oxoisovalerate dehydrogenase E2 component

Probab=99.85  E-value=4.1e-21  Score=198.48  Aligned_cols=105  Identities=27%  Similarity=0.353  Sum_probs=95.6

Q ss_pred             eeehHHHHHHHHHHHhHhhhhhhcccccCCcchHHHHHHHHhhcCCccceeeeCC--eeEEcCCcceEEEEecCCCeeec
Q psy14345        324 LIDGREAVLFLQKEAHLEAFQKKYGLKLGFMSPFIKASAYALQDQPVVNAVIEGT--DIVYRDYVDISVAVATPKGLVVP  401 (431)
Q Consensus       324 vIDg~~a~~fl~~lk~l~~~~~~~~~klt~~~~~~ka~~~aL~~~P~~Na~~~~~--~i~~~~~vnigvAV~~~~GL~vP  401 (431)
                      .+|.+.+..+++.+++.   ..+.|.|+|+++||+||++.||++||.+|++|+++  .|++++++||||||++++||+||
T Consensus       215 eid~~~l~~~r~~~~~~---~~~~g~kls~~~~likA~a~aL~~~P~~Na~~~~~~~~i~~~~~vnIgiAv~~~~GL~vP  291 (416)
T PLN02528        215 EINVDALVELKASFQEN---NTDPTVKHTFLPFLIKSLSMALSKYPLLNSCFNEETSEIRLKGSHNIGVAMATEHGLVVP  291 (416)
T ss_pred             EEEhHHHHHHHHHHhhh---hhhcCCcccHHHHHHHHHHHHHHhCchhhEEEecCCceEEEeCCCCeEEEEeCCCCeEec
Confidence            37788888888887743   22348899999999999999999999999999765  79999999999999999999999


Q ss_pred             eecCcccCCHHHHHHHHHHHHHHHHcCCCC
Q psy14345        402 VIRNVEAMNFADIELTIAALGEKARTGKYT  431 (431)
Q Consensus       402 vi~~a~~~~l~~ia~~~~~l~~~ar~g~L~  431 (431)
                      ||||+|++|+.||++++++|++|||+|+|+
T Consensus       292 vi~~a~~~sl~eI~~~~~~l~~~ar~gkL~  321 (416)
T PLN02528        292 NIKNVQSLSLLEITKELSRLQHLAAENKLN  321 (416)
T ss_pred             ccCCcccCCHHHHHHHHHHHHHHHHcCCCC
Confidence            999999999999999999999999999985

>TIGR01348 PDHac_trf_long pyruvate dehydrogenase complex dihydrolipoamide acetyltransferase, long form

Probab=99.84  E-value=6.7e-21  Score=203.15  Aligned_cols=105  Identities=36%  Similarity=0.561  Sum_probs=95.8

Q ss_pred             eeehHHHHHHHHHHHhHhhhhhhcccccCCcchHHHHHHHHhhcCCccceeeeC--CeeEEcCCcceEEEEecCCCeeec
Q psy14345        324 LIDGREAVLFLQKEAHLEAFQKKYGLKLGFMSPFIKASAYALQDQPVVNAVIEG--TDIVYRDYVDISVAVATPKGLVVP  401 (431)
Q Consensus       324 vIDg~~a~~fl~~lk~l~~~~~~~~~klt~~~~~~ka~~~aL~~~P~~Na~~~~--~~i~~~~~vnigvAV~~~~GL~vP  401 (431)
                      -+|.+.+..|++.+++..   .+.|.|+|+++||+||++.||++||.+|++|++  +.|+++++|||||||++++||+||
T Consensus       349 evdvt~l~~~r~~l~~~~---~~~g~kls~~~~l~kA~~~AL~~~P~~Na~~~~~~~~i~~~~~vnigvAv~~~~GL~vP  425 (546)
T TIGR01348       349 KADITEMEAFRKQQNAAV---EKEGVKLTVLHILMKAVAAALKKFPKFNASLDLGGEQLILKKYVNIGVAVDTPNGLLVP  425 (546)
T ss_pred             EEEcHHHHHHHHHHHhhh---hhcCCcccHHHHHHHHHHHHHHhCChhhEEEeCCCCEEEEeCCcCEEEEEECCCCeEEC
Confidence            378889999998887422   224789999999999999999999999999974  579999999999999999999999


Q ss_pred             eecCcccCCHHHHHHHHHHHHHHHHcCCCC
Q psy14345        402 VIRNVEAMNFADIELTIAALGEKARTGKYT  431 (431)
Q Consensus       402 vi~~a~~~~l~~ia~~~~~l~~~ar~g~L~  431 (431)
                      ||||+|+|||.+|++++++|++|||+|+|+
T Consensus       426 vi~~a~~~sl~~ia~~~~~l~~~ar~g~L~  455 (546)
T TIGR01348       426 VIKDVDRKGITELALELSDLAKKARDGKLT  455 (546)
T ss_pred             CcCCcccCCHHHHHHHHHHHHHHHhcCCCC
Confidence            999999999999999999999999999996

This model describes a subset of pyruvate dehydrogenase complex dihydrolipoamide acetyltransferase specifically close by both phylogenetic and per cent identity (UPGMA) trees. Members of this set include two or three copies of the lipoyl-binding domain. E. coli AceF is a member of this model, while mitochondrial and some other bacterial forms belong to a separate model.

>PRK12270 kgd alpha-ketoglutarate decarboxylase; Reviewed

Probab=99.81  E-value=5.4e-20  Score=199.06  Aligned_cols=118  Identities=25%  Similarity=0.286  Sum_probs=105.4

Q ss_pred             eeeeeeeeee----eeeeehHHHHHHHHHHHhHhhhhhhcccccCCcchHHHHHHHHhhcCCccceeee--CC--eeEEc
Q psy14345        312 PMMYVALTYD----HRLIDGREAVLFLQKEAHLEAFQKKYGLKLGFMSPFIKASAYALQDQPVVNAVIE--GT--DIVYR  383 (431)
Q Consensus       312 ~~m~lslt~D----HRvIDg~~a~~fl~~lk~l~~~~~~~~~klt~~~~~~ka~~~aL~~~P~~Na~~~--~~--~i~~~  383 (431)
                      +.|..+++++    +|.|+...+..++..+++.  +....|.|+|+||||+||++.||++||.+|++|+  ++  .|+++
T Consensus       129 kNM~aSL~vPtaTsvr~Ip~k~L~dnR~~In~~--l~r~~GgKVSFThlI~kAvv~AL~~~P~mNasy~~~DGKp~iv~~  206 (1228)
T PRK12270        129 KNMDASLEVPTATSVRAVPAKLLIDNRIVINNH--LKRTRGGKVSFTHLIGYALVQALKAFPNMNRHYAEVDGKPTLVTP  206 (1228)
T ss_pred             HHHHhhhccCceeeeecccHHHHHHHHHHHHHH--hhhccCCcccHHHHHHHHHHHHHHhCchhhceeeccCCCceeecc
Confidence            3466666666    5789999999999988853  3456799999999999999999999999999997  44  49999


Q ss_pred             CCcceEEEEecC-----CCeeeceecCcccCCHHHHHHHHHHHHHHHHcCCCC
Q psy14345        384 DYVDISVAVATP-----KGLVVPVIRNVEAMNFADIELTIAALGEKARTGKYT  431 (431)
Q Consensus       384 ~~vnigvAV~~~-----~GL~vPvi~~a~~~~l~~ia~~~~~l~~~ar~g~L~  431 (431)
                      ++|||||||+++     +||+|||||+||+|++.||+.++++|+.|||+|||+
T Consensus       207 ~~VNlGiAVdl~~~dGsRgLVVPvIK~Ad~l~f~ef~~ay~dLV~KAR~gKLt  259 (1228)
T PRK12270        207 AHVNLGLAIDLPKKDGSRQLVVPAIKGAETMDFAQFWAAYEDIVRRARDGKLT  259 (1228)
T ss_pred             CCcceEEEEecCCCCCCcceeeccccccccCCHHHHHHHHHHHHHHHHcCCCC
Confidence            999999999999     689999999999999999999999999999999996

>KOG0559|consensus

Probab=99.80  E-value=1.3e-19  Score=177.30  Aligned_cols=105  Identities=71%  Similarity=1.009  Sum_probs=100.4

Q ss_pred             eehHHHHHHHHHHHhHhhhhhhcccccCCcchHHHHHHHHhhcCCccceeeeCCeeEEcCCcceEEEEecCCCeeeceec
Q psy14345        325 IDGREAVLFLQKEAHLEAFQKKYGLKLGFMSPFIKASAYALQDQPVVNAVIEGTDIVYRDYVDISVAVATPKGLVVPVIR  404 (431)
Q Consensus       325 IDg~~a~~fl~~lk~l~~~~~~~~~klt~~~~~~ka~~~aL~~~P~~Na~~~~~~i~~~~~vnigvAV~~~~GL~vPvi~  404 (431)
                      ||...++.+++..+  +++.+++|+|+.+..+|+||++.||++.|.+|+.++|+.|+|+++|||+|||+|+.||+|||||
T Consensus       260 vDMS~lm~mRk~yk--daf~kKhGvKlGfMs~F~KA~~~Alq~qPvVNavIdg~~iVYRDyvDISvAVaTpkGLVvPViR  337 (457)
T KOG0559|consen  260 VDMSNLMEMRKQYK--DAFLKKHGVKLGFMSGFSKAAAYALQDQPVVNAVIDGDDIVYRDYVDISVAVATPKGLVVPVIR  337 (457)
T ss_pred             hhHHHHHHHHHHHH--HHHHHHhCceeeehhHHHHHHHHHhhhCcceeeeecCCeeEEeecceeEEEeecCCceeeeeec
Confidence            78889999888776  5677899999999999999999999999999999999999999999999999999999999999


Q ss_pred             CcccCCHHHHHHHHHHHHHHHHcCCCC
Q psy14345        405 NVEAMNFADIELTIAALGEKARTGKYT  431 (431)
Q Consensus       405 ~a~~~~l~~ia~~~~~l~~~ar~g~L~  431 (431)
                      |++.+++.||-.++..|..|||+|+|+
T Consensus       338 nae~Mn~adIE~~i~~L~~KAr~g~la  364 (457)
T KOG0559|consen  338 NAESMNFADIEKTIAGLGKKARDGKLA  364 (457)
T ss_pred             ccccccHHHHHHHHHHHHHhhccCcee
Confidence            999999999999999999999999985

>KOG0558|consensus

Probab=99.78  E-value=7.3e-20  Score=178.11  Aligned_cols=130  Identities=32%  Similarity=0.466  Sum_probs=112.0

Q ss_pred             EEEeeeCC-eEEEeeeeeeeeeeeeee----eehHHHHHHHHHHHhHhhhhhhcccccCCcchHHHHHHHHhhcCCccce
Q psy14345        299 ERPVAIKG-QVVVKPMMYVALTYDHRL----IDGREAVLFLQKEAHLEAFQKKYGLKLGFMSPFIKASAYALQDQPVVNA  373 (431)
Q Consensus       299 ~~pv~~~g-~~~~~~~m~lslt~DHRv----IDg~~a~~fl~~lk~l~~~~~~~~~klt~~~~~~ka~~~aL~~~P~~Na  373 (431)
                      ++.++..| +-...+.|+..+.++|+-    ||.+.+.+|+..+++   +..+.++|+|+.+|++||++.||.+||.+|+
T Consensus       243 Dkt~plrGf~rAMvKtMt~alkiPHF~y~dEIn~~sLvklr~elk~---~a~e~~IKltfmPf~iKaaSlaL~kyP~vNs  319 (474)
T KOG0558|consen  243 DKTVPLRGFSRAMVKTMTEALKIPHFGYVDEINCDSLVKLRQELKE---NAKERGIKLTFMPFFIKAASLALLKYPIVNS  319 (474)
T ss_pred             cceeechhHHHHHHHHHHHHhcCCccccccccChHHHHHHHHHHhh---hhhhcCceeeehHHHHHHHHHHHhhCccccc
Confidence            44555445 222235688889999974    788888888877764   4556799999999999999999999999999


Q ss_pred             eeeC--CeeEEcCCcceEEEEecCCCeeeceecCcccCCHHHHHHHHHHHHHHHHcCCCC
Q psy14345        374 VIEG--TDIVYRDYVDISVAVATPKGLVVPVIRNVEAMNFADIELTIAALGEKARTGKYT  431 (431)
Q Consensus       374 ~~~~--~~i~~~~~vnigvAV~~~~GL~vPvi~~a~~~~l~~ia~~~~~l~~~ar~g~L~  431 (431)
                      +++.  +.|++..++|||+|++|+.||+||.|||++.+|+-||++++.+|.++++.|+|+
T Consensus       320 s~d~~~e~ii~K~sHNIgvAmdT~~GLvVPNiKN~q~~si~eIakeLnrLq~~g~~~qls  379 (474)
T KOG0558|consen  320 SFDEESENIILKGSHNIGVAMDTEQGLVVPNIKNVQSLSIFEIAKELNRLQELGANGQLS  379 (474)
T ss_pred             hhhhhhhhhhhhcccceeEEecCCCceeccCccccchhhHHHHHHHHHHHHHhhhcCCcC
Confidence            9976  589999999999999999999999999999999999999999999999999985

>PRK11854 aceF pyruvate dehydrogenase dihydrolipoyltransacetylase; Validated

Probab=99.77  E-value=2e-18  Score=187.39  Aligned_cols=107  Identities=32%  Similarity=0.503  Sum_probs=95.6

Q ss_pred             eeehHHHHHHHHHHHhHhhhhhhcccccCCcchHHHHHHHHhhcCCccceeee--CCeeEEcCCcceEEEEecCCCeeec
Q psy14345        324 LIDGREAVLFLQKEAHLEAFQKKYGLKLGFMSPFIKASAYALQDQPVVNAVIE--GTDIVYRDYVDISVAVATPKGLVVP  401 (431)
Q Consensus       324 vIDg~~a~~fl~~lk~l~~~~~~~~~klt~~~~~~ka~~~aL~~~P~~Na~~~--~~~i~~~~~vnigvAV~~~~GL~vP  401 (431)
                      -+|.+....|++.++... ...+.|.|+|+++||+||++.||++||.+|++|+  ++.|+++++||||+||++++||+||
T Consensus       434 evD~t~l~~~rk~~~~~~-~~~~~g~k~t~~~~likAva~Al~~~P~~Na~~~~~~~~i~~~~~vnigiAV~~~~GL~vP  512 (633)
T PRK11854        434 KADITELEAFRKQQNAEA-EKRKLGVKITPLVFIMKAVAAALEQMPRFNSSLSEDGQRLTLKKYVNIGIAVDTPNGLVVP  512 (633)
T ss_pred             EEEcHHHHHHHHHHhhhh-hhhcccCcccHHHHHHHHHHHHHHhCCHhhEEEecCCCEEEEecccCEEEEEECCCceEEe
Confidence            378888888888776421 1224588999999999999999999999999996  5689999999999999999999999


Q ss_pred             eecCcccCCHHHHHHHHHHHHHHHHcCCCC
Q psy14345        402 VIRNVEAMNFADIELTIAALGEKARTGKYT  431 (431)
Q Consensus       402 vi~~a~~~~l~~ia~~~~~l~~~ar~g~L~  431 (431)
                      ||||+++++|.+|++++++|++++|+|+|+
T Consensus       513 vi~~a~~~sl~~i~~~~~~l~~~ar~~~l~  542 (633)
T PRK11854        513 VFKDVNKKGIIELSRELMDISKKARDGKLT  542 (633)
T ss_pred             eECCCccCCHHHHHHHHHHHHHHHHcCCCC
Confidence            999999999999999999999999999985

>COG0508 AceF Pyruvate/2-oxoglutarate dehydrogenase complex, dihydrolipoamide acyltransferase (E2) component, and related enzymes [Energy production and conversion]

Probab=99.76  E-value=2.3e-18  Score=177.39  Aligned_cols=104  Identities=45%  Similarity=0.672  Sum_probs=95.8

Q ss_pred             eehHHHHHHHHHHHhHhhhhhhcccccCCcchHHHHHHHHhhcCCccceeeeCC--eeEEcCCcceEEEEecCCCeeece
Q psy14345        325 IDGREAVLFLQKEAHLEAFQKKYGLKLGFMSPFIKASAYALQDQPVVNAVIEGT--DIVYRDYVDISVAVATPKGLVVPV  402 (431)
Q Consensus       325 IDg~~a~~fl~~lk~l~~~~~~~~~klt~~~~~~ka~~~aL~~~P~~Na~~~~~--~i~~~~~vnigvAV~~~~GL~vPv  402 (431)
                      +|.+....+++.++....  ++ +.|+|+++|++||++.||++||.+|++|+++  .+.+++++|||+||++++||+|||
T Consensus       207 vd~t~l~~lr~~~~~~~~--~~-g~klt~~~f~~kA~~~Alk~~P~~Na~~~~~~~~iv~~~~~~igiAv~t~~GLvvpV  283 (404)
T COG0508         207 VDMTKLMALRKKLKEEFE--KK-GVKLTFLSFLVKAVVKALKKFPEVNASIDGDGEEIVYHKYVNIGIAVDTPRGLVVPV  283 (404)
T ss_pred             ecHHHHHHHHHHhhhhhc--cc-CccccHHHHHHHHHHHHHHhCCccceeeccccceEEEeccccEEEEEecCCCeEecc
Confidence            678888888888875332  33 9999999999999999999999999999875  899999999999999999999999


Q ss_pred             ecCcccCCHHHHHHHHHHHHHHHHcCCCC
Q psy14345        403 IRNVEAMNFADIELTIAALGEKARTGKYT  431 (431)
Q Consensus       403 i~~a~~~~l~~ia~~~~~l~~~ar~g~L~  431 (431)
                      |||||++++.+|+.++++|+.|||+|+|+
T Consensus       284 ir~a~~~~~~~i~~~i~~la~~aR~~kl~  312 (404)
T COG0508         284 IRDADKKSLAEIAKEIKDLAKKARDGKLT  312 (404)
T ss_pred             eeecccCCHHHHHHHHHHHHHHHHhcCcC
Confidence            99999999999999999999999999985

>PRK11855 dihydrolipoamide acetyltransferase; Reviewed

Probab=99.70  E-value=5.4e-17  Score=173.73  Aligned_cols=104  Identities=38%  Similarity=0.610  Sum_probs=94.7

Q ss_pred             eehHHHHHHHHHHHhHhhhhhhcccccCCcchHHHHHHHHhhcCCccceeee--CCeeEEcCCcceEEEEecCCCeeece
Q psy14345        325 IDGREAVLFLQKEAHLEAFQKKYGLKLGFMSPFIKASAYALQDQPVVNAVIE--GTDIVYRDYVDISVAVATPKGLVVPV  402 (431)
Q Consensus       325 IDg~~a~~fl~~lk~l~~~~~~~~~klt~~~~~~ka~~~aL~~~P~~Na~~~--~~~i~~~~~vnigvAV~~~~GL~vPv  402 (431)
                      +|.+.+..+++.+++..   ++.|.|+|+++||+||+++||++||.||++|+  ++.|+++++||||+||++++||++||
T Consensus       351 vd~t~l~~~r~~~~~~~---~~~g~k~s~~~~likAv~~al~~~P~ln~~~~~~~~~i~~~~~i~i~~Av~~~~gl~vpv  427 (547)
T PRK11855        351 ADITDLEALRKQLKKEA---EKAGVKLTMLPFFIKAVVAALKEFPVFNASLDEDGDELTYKKYFNIGFAVDTPNGLVVPV  427 (547)
T ss_pred             EEChHHHHHHHHhhhhh---hhcCCCCCHHHHHHHHHHHHHHhCcHhhEEEccCCCEEEEeCCccEEEEEECCCccEeCC
Confidence            78888888888877421   23478999999999999999999999999997  56899999999999999999999999


Q ss_pred             ecCcccCCHHHHHHHHHHHHHHHHcCCCC
Q psy14345        403 IRNVEAMNFADIELTIAALGEKARTGKYT  431 (431)
Q Consensus       403 i~~a~~~~l~~ia~~~~~l~~~ar~g~L~  431 (431)
                      |+|+++++|.+|++++++|++++|+|+|+
T Consensus       428 i~~~~~~sl~~i~~~~~~l~~~ar~~~l~  456 (547)
T PRK11855        428 IKDVDKKSLLEIAREIAELAKKARDGKLK  456 (547)
T ss_pred             cCCCccCCHHHHHHHHHHHHHHHHcCCCC
Confidence            99999999999999999999999999984

>KOG0557|consensus

Probab=99.69  E-value=1.3e-17  Score=169.02  Aligned_cols=120  Identities=33%  Similarity=0.388  Sum_probs=99.7

Q ss_pred             eEEEeeeeeeeeeeeeeeeeh----HHHHHHHHHHHhHhhhhhhcccccCCcchHHHHHHHHhhcCCccceeeeC-CeeE
Q psy14345        307 QVVVKPMMYVALTYDHRLIDG----REAVLFLQKEAHLEAFQKKYGLKLGFMSPFIKASAYALQDQPVVNAVIEG-TDIV  381 (431)
Q Consensus       307 ~~~~~~~m~lslt~DHRvIDg----~~a~~fl~~lk~l~~~~~~~~~klt~~~~~~ka~~~aL~~~P~~Na~~~~-~~i~  381 (431)
                      .+...+++....+++|+.+..    .....+++.++     .++.+.++|+++||+||.+.||+++|++|++|.+ +.|+
T Consensus       252 ~viakrl~eSk~~IPh~yvt~~~~~d~ll~~r~~ln-----~~~~~~~vsvndliiKAaa~al~~vPevNs~w~~~~~i~  326 (470)
T KOG0557|consen  252 RVIAKRLLESKQTIPHYYVTVDVNLDKLLALREKLN-----FEKSIKKVSLNDLIAKAAALALAKVPEVNSSWMDELVIR  326 (470)
T ss_pred             hhhhhhhhhhhcCCCeEEEeeeeehHHHHHHHHHhh-----hcccCcccchhHHHHHHHHHHHhcCCcccceecCCcccc
Confidence            344445555556666655433    34455555544     2356789999999999999999999999999977 8999


Q ss_pred             EcCCcceEEEEecCCCeeeceecCcccCCHHHHHHHHHHHHHHHHcCCCC
Q psy14345        382 YRDYVDISVAVATPKGLVVPVIRNVEAMNFADIELTIAALGEKARTGKYT  431 (431)
Q Consensus       382 ~~~~vnigvAV~~~~GL~vPvi~~a~~~~l~~ia~~~~~l~~~ar~g~L~  431 (431)
                      +++.|||.+||++++||++|+|+|+|.++|.+|+.++++|+.+||.|+|.
T Consensus       327 ~~~~VdisvAVat~~GLitPii~na~~kgl~~is~~vkel~~kAr~~kL~  376 (470)
T KOG0557|consen  327 QLSSVDISVAVATPNGLITPIIQNADAKGLSTISSKVKELAQKAREGKLQ  376 (470)
T ss_pred             ccCcCChhheeeccCcccchhhhhcccccHHHHHHHHHHHHHHHhhccCC
Confidence            99999999999999999999999999999999999999999999999983

>PRK11856 branched-chain alpha-keto acid dehydrogenase subunit E2; Reviewed

Probab=99.68  E-value=2.1e-16  Score=163.78  Aligned_cols=100  Identities=37%  Similarity=0.535  Sum_probs=92.3

Q ss_pred             eehHHHHHHHHHHHhHhhhhhhcccccCCcchHHHHHHHHhhcCCccceeeeCCeeEEcCCcceEEEEecCCCeeeceec
Q psy14345        325 IDGREAVLFLQKEAHLEAFQKKYGLKLGFMSPFIKASAYALQDQPVVNAVIEGTDIVYRDYVDISVAVATPKGLVVPVIR  404 (431)
Q Consensus       325 IDg~~a~~fl~~lk~l~~~~~~~~~klt~~~~~~ka~~~aL~~~P~~Na~~~~~~i~~~~~vnigvAV~~~~GL~vPvi~  404 (431)
                      ||.+.+..+++.+++       .+.++|+++|++||+++||++||++|++|+++.++++++||||+||++++||++|||+
T Consensus       220 idvt~l~~~~k~~~~-------~~~~ls~~~~~ikav~~Al~~~P~~n~~~~~~~i~~~~~i~i~~av~~~~gl~~pvi~  292 (411)
T PRK11856        220 VDVTALLALRKQLKA-------IGVKLTVTDFLIKAVALALKKFPELNASWDDDAIVLKKYVNIGIAVATDGGLIVPVIR  292 (411)
T ss_pred             EEhHHHHHHHHHHHh-------hccCccHHHHHHHHHHHHHHhCcHhheEEeCCEEEEcCCcCEEEEEECCCCeEeCcCC
Confidence            677888888777642       1379999999999999999999999999999999999999999999999999999999


Q ss_pred             CcccCCHHHHHHHHHHHHHHHHcCCCC
Q psy14345        405 NVEAMNFADIELTIAALGEKARTGKYT  431 (431)
Q Consensus       405 ~a~~~~l~~ia~~~~~l~~~ar~g~L~  431 (431)
                      +++++++.+|+++++++++++|+|+|+
T Consensus       293 ~~~~~sl~ei~~~~~~~~~~ar~~~l~  319 (411)
T PRK11856        293 DADKKSLFELAREIKDLAEKAREGKLK  319 (411)
T ss_pred             CcccCCHHHHHHHHHHHHHHHHcCCCC
Confidence            999999999999999999999999874

>PF00302 CAT: Chloramphenicol acetyltransferase; InterPro: IPR001707 Chloramphenicol acetyltransferase (CAT) (2

Probab=99.58  E-value=7.4e-14  Score=131.60  Aligned_cols=178  Identities=15%  Similarity=0.140  Sum_probs=131.9

Q ss_pred             ccceEEEEeeeccchHHHHHHHHHHHHHHhhcCCCCChhHHHHHHHHHHHhhCCccceeeeCC-eeEecCcccEEEEEee
Q psy14345        126 NVNAMLTTFNEIDMSAIIEFRKAHLEAFQKKYGLKLGFMSPFIKASAYALQDQPVVNAVIEGT-DIVYRDYVDISVGMGR  204 (431)
Q Consensus       126 ~~iP~~t~~~evD~t~l~~~r~~l~~~~~~~~g~k~t~~~~~ikA~a~Al~~~P~~N~~~~~~-~i~~~~~v~igvav~~  204 (431)
                      ..-|+++++.+||+|.|.++.|+          .+++|+..+++++.+|+.++|+|+-++.++ ++++++.+|.+.+|..
T Consensus        23 ~~~p~~svT~~lDvT~l~~~~K~----------~~~~Ff~~~ly~i~ka~N~~~efR~ri~~~g~v~~~d~i~ps~Tv~~   92 (206)
T PF00302_consen   23 FDNPYFSVTVNLDVTNLYKYAKE----------KGLSFFPAYLYAIMKAANEIPEFRYRIVDDGEVVYYDRIDPSYTVFH   92 (206)
T ss_dssp             TSBEEEEEEEEEE-HHHHHHHHH----------TT--HHHHHHHHHHHHHTTSGGGCEEEETTSCEEEESS-EEEEEEEE
T ss_pred             CCCceEecceeEEhHHHHHHHHH----------cCCCcHHHHHHHHHHHHhcCHHHheeeeCCCcEEEECCcceeeeEEe
Confidence            36799999999999999987765          368999999999999999999999999987 9999999999999987


Q ss_pred             cCCCCCCccCCcEEEEeecCCCccccccccCChhHHHHHHHHHHhhhhhcCCCCccc-CCCceEEEecCCCCCccceeec
Q psy14345        205 NESNLPRWCFNGLLSGVLVLTEHLNGKYCVSSRPSYERHTTGWACYDRLNWNLAIED-SDGGTFTISNGGVFGSLLGTPI  283 (431)
Q Consensus       205 ~~~~~~~~~~~gL~vpvi~~a~~~s~~l~~~~~~~i~~~~~~l~~~ar~~g~L~~~~-~~ggTftiSn~G~~G~~~~~pi  283 (431)
                           +.   ++.+ -.+.-....+  +     .++.+...+.+++++....+.+++ .....|.+|++.|+..++++.-
T Consensus        93 -----~~---~~tF-s~~~~~y~~d--f-----~~F~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~S~lPW~~FTs~~~~  156 (206)
T PF00302_consen   93 -----KD---DETF-SFCWTEYDED--F-----EEFYANYEADIERYKESKGLFPKPNDPDNLIYISCLPWVSFTSFSHP  156 (206)
T ss_dssp             -----TT---TTEE-EEEEE---SS--H-----HHHHHHHHHHHHHHTTS-SSSTTCCHHSSEEEEEEETTS--SEEEEE
T ss_pred             -----CC---CCeE-EEEEecCCCC--H-----HHHHHHHHHHHHHHhccccccCCCCCCcCEEEEecccceeccccccc
Confidence                 41   3433 3333344556  9     999999999999987456676664 4557999999999999988765


Q ss_pred             cCCC-c--ceeeeccceeEEEeeeCCeEEEeeeeeeeeeeeeeeeehHHHHHHHHHH
Q psy14345        284 INPP-Q--SAILGMHGTFERPVAIKGQVVVKPMMYVALTYDHRLIDGREAVLFLQKE  337 (431)
Q Consensus       284 i~pp-q--~ail~vG~i~~~pv~~~g~~~~~~~m~lslt~DHRvIDg~~a~~fl~~l  337 (431)
                      ++.+ .  .-++..|+..++    +|    +-.|++++.+.|.++||-.+.+|++++
T Consensus       157 ~~~~~~~~~P~it~GK~~~~----~g----r~~mPvsiqvhHa~~DG~Hv~~F~~~l  205 (206)
T PF00302_consen  157 VPNGKDDSIPRITWGKYFEE----NG----RLLMPVSIQVHHALVDGYHVGQFFEEL  205 (206)
T ss_dssp             ESSTTT-SS-EEEEE--EEE----TT----EEEEEEEEEEETTT--HHHHHHHHHHH
T ss_pred             ccCCCcccccEEEeeeeEeE----CC----EEEEEEEEEEecccccHHHHHHHHHHh
Confidence            5543 2  235666666543    23    567999999999999999999999876

3.1.28 from EC) [] catalyzes the acetyl-CoA dependent acetylation of chloramphenicol (Cm), an antibiotic which inhibits prokaryotic peptidyltransferase activity. Acetylation of Cm by CAT inactivates the antibiotic. A histidine residue, located in the C-terminal section of the enzyme, plays a central role in its catalytic mechanism. There is a second family of CAT [], evolutionary unrelated to the main family described above. These CAT belong to the bacterial hexapeptide-repeat containing-transferases family (see IPR001451 from INTERPRO). The crystal structure of the type III enzyme from Escherichia coli with chloramphenicol bound has been determined. CAT is a trimer of identical subunits (monomer Mr 25,000) and the trimeric structure is stabilised by a number of hydrogen bonds, some of which result in the extension of a beta-sheet across the subunit interface. Chloramphenicol binds in a deep pocket located at the boundary between adjacent subunits of the trimer, such that the majority of residues forming the binding pocket belong to one subunit while the catalytically essential histidine belongs to the adjacent subunit. His195 is appropriately positioned to act as a general base catalyst in the reaction, and the required tautomeric stabilisation is provided by an unusual interaction with a main-chain carbonyl oxygen [].; GO: 0008811 chloramphenicol O-acetyltransferase activity; PDB: 1CIA_A 4CLA_A 1QCA_A 2CLA_A 1CLA_A 3CLA_A 3U9F_K 1PD5_F 1Q23_F 3U9B_F ....

>PRK13757 chloramphenicol acetyltransferase; Provisional

Probab=99.54  E-value=3.8e-13  Score=127.70  Aligned_cols=179  Identities=14%  Similarity=0.081  Sum_probs=140.7

Q ss_pred             ceEEEEeeeccchHHHHHHHHHHHHHHhhcCCCCChhHHHHHHHHHHHhhCCccceeeeCCeeEecCcccEEEEEeecCC
Q psy14345        128 NAMLTTFNEIDMSAIIEFRKAHLEAFQKKYGLKLGFMSPFIKASAYALQDQPVVNAVIEGTDIVYRDYVDISVGMGRNES  207 (431)
Q Consensus       128 iP~~t~~~evD~t~l~~~r~~l~~~~~~~~g~k~t~~~~~ikA~a~Al~~~P~~N~~~~~~~i~~~~~v~igvav~~~~~  207 (431)
                      -|+|.++++||+|+|+++.|+          .+++|++.+++|+++|+.++|+|+-++.+++++.++.+|.+++|..   
T Consensus        30 ~~~fsiT~~iDiT~l~~~~K~----------~~~~fy~~~ly~v~kavN~~~eFR~r~~~~~v~~~D~i~ps~Ti~~---   96 (219)
T PRK13757         30 QCTYNQTVQLDITAFLKTVKK----------NKHKFYPAFIHILARLMNAHPEFRMAMKDGELVIWDSVHPCYTVFH---   96 (219)
T ss_pred             CCceEEEEEEEHHHHHHHHHH----------cCCChHHHHHHHHHHHHhcCHhHheEEECCeEEEEeEEeeeEEEEe---
Confidence            345999999999999987665          3689999999999999999999999999999999999999999998   


Q ss_pred             CCCCccCCcEEEEeecCCCccccccccCChhHHHHHHHHHHhhhhhcCCCCcccCCCceEEEecCCCCCccceeeccCC-
Q psy14345        208 NLPRWCFNGLLSGVLVLTEHLNGKYCVSSRPSYERHTTGWACYDRLNWNLAIEDSDGGTFTISNGGVFGSLLGTPIINP-  286 (431)
Q Consensus       208 ~~~~~~~~gL~vpvi~~a~~~s~~l~~~~~~~i~~~~~~l~~~ar~~g~L~~~~~~ggTftiSn~G~~G~~~~~pii~p-  286 (431)
                        +    ++-..-.+.-...-+  +     .++.+...+.++++..+..+-+++.....|.||++.|+..++++.-++. 
T Consensus        97 --~----~~~tFs~~~~~y~~d--f-----~~F~~~~~~~~~~~~~~~~~~~~~~~~n~~~iS~iPW~sFTs~~~~~~~~  163 (219)
T PRK13757         97 --E----QTETFSSLWSEYHDD--F-----RQFLHIYSQDVACYGENLAYFPKGFIENMFFVSANPWVSFTSFDLNVANM  163 (219)
T ss_pred             --C----CCceEEEEEecCcCC--H-----HHHHHHHHHHHHHHhcCccccCCCCCCCeEEeecccCcCccccccccccC
Confidence              4    322344444445556  8     8898888888888882345656555668999999999999988655443 


Q ss_pred             Ccce--eeeccceeEEEeeeCCeEEEeeeeeeeeeeeeeeeehHHHHHHHHHHHhH
Q psy14345        287 PQSA--ILGMHGTFERPVAIKGQVVVKPMMYVALTYDHRLIDGREAVLFLQKEAHL  340 (431)
Q Consensus       287 pq~a--il~vG~i~~~pv~~~g~~~~~~~m~lslt~DHRvIDg~~a~~fl~~lk~l  340 (431)
                      ...+  ++..|+..++    +    -+-.|++++.+.|.++||..+.+|++.+.+.
T Consensus       164 ~~~~~P~it~GKy~~~----~----gr~~mPvSvqvHHa~~DG~Hv~~F~~~lQ~~  211 (219)
T PRK13757        164 DNFFAPVFTMGKYYTQ----G----DKVLMPLAIQVHHAVCDGFHVGRMLNELQQY  211 (219)
T ss_pred             CCCcCcEEEeeceEEE----C----CEEEEEEEEEEehhccchHHHHHHHHHHHHH
Confidence            3223  4445544322    2    3467999999999999999999999998754

>COG4845 Chloramphenicol O-acetyltransferase [Defense mechanisms]

Probab=99.05  E-value=5.2e-09  Score=96.36  Aligned_cols=184  Identities=13%  Similarity=0.051  Sum_probs=143.5

Q ss_pred             ccceEEEEeeeccchHHHHHHHHHHHHHHhhcCCCCChhHHHHHHHHHHHhhCCccceeeeCCeeEecCcccEEEEEeec
Q psy14345        126 NVNAMLTTFNEIDMSAIIEFRKAHLEAFQKKYGLKLGFMSPFIKASAYALQDQPVVNAVIEGTDIVYRDYVDISVGMGRN  205 (431)
Q Consensus       126 ~~iP~~t~~~evD~t~l~~~r~~l~~~~~~~~g~k~t~~~~~ikA~a~Al~~~P~~N~~~~~~~i~~~~~v~igvav~~~  205 (431)
                      ..+||+.++.+.|++.+....++          .+++|+..++.|+.+++.+|++|+-++.++...+++.++..+.|.. 
T Consensus        26 ~~~p~y~i~~~LDvtn~~~~vk~----------~~l~Ff~a~l~avtr~~n~~~EFRlr~~~~~~~~~d~v~p~~tv~~-   94 (219)
T COG4845          26 LQYPHYDINLQLDVTNFYGYVKE----------NGLSFFPALLYAVTRCANRHQEFRLRIQNGQLGYWDNVPPMYTVFH-   94 (219)
T ss_pred             cccceEeeeeeeehhHHHHHHHH----------cCCcchHHHHHHHHHHhcccHHhHhhhcCCeeEEeecCCcceEEEc-
Confidence            46899999999999999887765          2699999999999999999999999999999999999999999999 


Q ss_pred             CCCCCCccCCcEEEEeecCCCccccccccCChhHHHHHHHHHHhhhhhcCCCCcccCC-CceEEEecCCCCCccceeecc
Q psy14345        206 ESNLPRWCFNGLLSGVLVLTEHLNGKYCVSSRPSYERHTTGWACYDRLNWNLAIEDSD-GGTFTISNGGVFGSLLGTPII  284 (431)
Q Consensus       206 ~~~~~~~~~~gL~vpvi~~a~~~s~~l~~~~~~~i~~~~~~l~~~ar~~g~L~~~~~~-ggTftiSn~G~~G~~~~~pii  284 (431)
                          +    ++-+.-++.-.-..+  +     .++.+....-+++.+++..+.++|=. .--.-+||+.|+..+.+..-+
T Consensus        95 ----~----~~e~Fs~l~~e~~~~--~-----~dF~q~y~~~ie~~~~~~~~~~k~~~~~~~~~~s~lPWlsFtslS~~~  159 (219)
T COG4845          95 ----G----ETETFSVLWTEYQED--Y-----EDFAQLYIEDIEQYGANNYERAKDPTPCDVYIFSNLPWLSFTSLSHHY  159 (219)
T ss_pred             ----C----CCcEEEEEecccccc--H-----HHHHHHHHHHHHHhccCcccccCCCCcceeEEeccccccceeeeeeec
Confidence                6    554556666556667  8     99999988888888844444443222 235688999998877554322


Q ss_pred             CCCcceeeeccceeEEEeeeCCeEE---EeeeeeeeeeeeeeeeehHHHHHHHHHHHhHhhh
Q psy14345        285 NPPQSAILGMHGTFERPVAIKGQVV---VKPMMYVALTYDHRLIDGREAVLFLQKEAHLEAF  343 (431)
Q Consensus       285 ~ppq~ail~vG~i~~~pv~~~g~~~---~~~~m~lslt~DHRvIDg~~a~~fl~~lk~l~~~  343 (431)
                      +        =.++.-.|+..+|+..   -+-.|++++.+.|..+||-....|+..+.++.+.
T Consensus       160 ~--------~~k~~~~PiF~~Grf~~~~Gkl~lPlavq~hHA~vDG~Hi~~l~~~lQ~~~~~  213 (219)
T COG4845         160 R--------RNKIYGQPIFYAGRFYEEDGKLTLPLAVQAHHANVDGFHIGQLFDQLQTLFSP  213 (219)
T ss_pred             c--------CCccccceeEeecceeccCCeEEEeEEEEecccccchhhHHHHHHHHHHHhcC
Confidence            2        1244555777666422   2346999999999999999999999998865443

>PF00302 CAT: Chloramphenicol acetyltransferase; InterPro: IPR001707 Chloramphenicol acetyltransferase (CAT) (2

Probab=95.21  E-value=0.22  Score=47.18  Aligned_cols=99  Identities=18%  Similarity=0.217  Sum_probs=71.5

Q ss_pred             eeeeeeeeeeeeeeehHHHHHHHHHHHhHhhhhhhcccccCCcchHHHHHHHHhhcCCccceeeeCC-eeEEcCCcceEE
Q psy14345        312 PMMYVALTYDHRLIDGREAVLFLQKEAHLEAFQKKYGLKLGFMSPFIKASAYALQDQPVVNAVIEGT-DIVYRDYVDISV  390 (431)
Q Consensus       312 ~~m~lslt~DHRvIDg~~a~~fl~~lk~l~~~~~~~~~klt~~~~~~ka~~~aL~~~P~~Na~~~~~-~i~~~~~vnigv  390 (431)
                      |++.++..     ||.+.+.++.++            .++++...++.++.+|+-++|++.-++.++ ++..++.+|.+.
T Consensus        26 p~~svT~~-----lDvT~l~~~~K~------------~~~~Ff~~~ly~i~ka~N~~~efR~ri~~~g~v~~~d~i~ps~   88 (206)
T PF00302_consen   26 PYFSVTVN-----LDVTNLYKYAKE------------KGLSFFPAYLYAIMKAANEIPEFRYRIVDDGEVVYYDRIDPSY   88 (206)
T ss_dssp             EEEEEEEE-----EE-HHHHHHHHH------------TT--HHHHHHHHHHHHHTTSGGGCEEEETTSCEEEESS-EEEE
T ss_pred             ceEeccee-----EEhHHHHHHHHH------------cCCCcHHHHHHHHHHHHhcCHHHheeeeCCCcEEEECCcceee
Confidence            55666666     455665444332            167889999999999999999999999887 999999999999


Q ss_pred             EEecC-CCeeeceecCcccCCHHHHHHHHHHHHHHHHcC
Q psy14345        391 AVATP-KGLVVPVIRNVEAMNFADIELTIAALGEKARTG  428 (431)
Q Consensus       391 AV~~~-~GL~vPvi~~a~~~~l~~ia~~~~~l~~~ar~g  428 (431)
                      .|-.+ ++.+.-+--. -.-++.+..+..++.++++++.
T Consensus        89 Tv~~~~~~tFs~~~~~-y~~df~~F~~~~~~~~~~~~~~  126 (206)
T PF00302_consen   89 TVFHKDDETFSFCWTE-YDEDFEEFYANYEADIERYKES  126 (206)
T ss_dssp             EEEETTTTEEEEEEE----SSHHHHHHHHHHHHHHHTTS
T ss_pred             eEEeCCCCeEEEEEec-CCCCHHHHHHHHHHHHHHHhcc
Confidence            99854 5655444222 2448999999999999988764

3.1.28 from EC) [] catalyzes the acetyl-CoA dependent acetylation of chloramphenicol (Cm), an antibiotic which inhibits prokaryotic peptidyltransferase activity. Acetylation of Cm by CAT inactivates the antibiotic. A histidine residue, located in the C-terminal section of the enzyme, plays a central role in its catalytic mechanism. There is a second family of CAT [], evolutionary unrelated to the main family described above. These CAT belong to the bacterial hexapeptide-repeat containing-transferases family (see IPR001451 from INTERPRO). The crystal structure of the type III enzyme from Escherichia coli with chloramphenicol bound has been determined. CAT is a trimer of identical subunits (monomer Mr 25,000) and the trimeric structure is stabilised by a number of hydrogen bonds, some of which result in the extension of a beta-sheet across the subunit interface. Chloramphenicol binds in a deep pocket located at the boundary between adjacent subunits of the trimer, such that the majority of residues forming the binding pocket belong to one subunit while the catalytically essential histidine belongs to the adjacent subunit. His195 is appropriately positioned to act as a general base catalyst in the reaction, and the required tautomeric stabilisation is provided by an unusual interaction with a main-chain carbonyl oxygen [].; GO: 0008811 chloramphenicol O-acetyltransferase activity; PDB: 1CIA_A 4CLA_A 1QCA_A 2CLA_A 1CLA_A 3CLA_A 3U9F_K 1PD5_F 1Q23_F 3U9B_F ....

>PRK11892 pyruvate dehydrogenase subunit beta; Provisional

Probab=94.65  E-value=0.41  Score=50.87  Aligned_cols=66  Identities=6%  Similarity=-0.027  Sum_probs=40.0

Q ss_pred             ccHHHHHHHHHHHHhcccceEEEEee-ecc-chHH----HHHHHHHHHHHHh-hcCCCCChhHHHHHHHHHHHhhC
Q psy14345        110 MNRMRQRIAQRLKEAQNVNAMLTTFN-EID-MSAI----IEFRKAHLEAFQK-KYGLKLGFMSPFIKASAYALQDQ  178 (431)
Q Consensus       110 ls~~Rk~ia~~m~~S~~~iP~~t~~~-evD-~t~l----~~~r~~l~~~~~~-~~g~k~t~~~~~ikA~a~Al~~~  178 (431)
                      ...+|.++.+.|.+-.+.-|.+.+.. ++- ....    ..+++++.   .+ -.+..++=.+++.-|+.+|+.-.
T Consensus       141 ~~~~r~a~~~al~~~~~~d~~vv~i~~Dv~~~~ga~~~t~~l~~~fg---p~R~id~gIaEq~~vg~AaGlA~~G~  213 (464)
T PRK11892        141 TMTVREALRDAMAEEMRRDEDVFVMGEEVAEYQGAYKVTQGLLQEFG---ARRVIDTPITEHGFAGIGVGAAFAGL  213 (464)
T ss_pred             chHHHHHHHHHHHHHHhhCcCEEEEeCCccccCCccccchHHHHHhC---ccceeecCccHHHHHHHHHHHHhCCC
Confidence            34788888888888877777655543 331 1111    23344431   21 12456777888888888888763

>PF02817 E3_binding: e3 binding domain; InterPro: IPR004167 A small domain of the E2 subunit of 2-oxo-acid dehydrogenases that is responsible for the binding of the E3 subunit

Probab=94.12  E-value=0.016  Score=40.06  Aligned_cols=25  Identities=24%  Similarity=0.260  Sum_probs=19.2

Q ss_pred             CCCCC-chhhhcCCCccccCCCCCCC
Q psy14345         71 SSPSP-SLCYSSAIEAATVKLPPADP   95 (431)
Q Consensus        71 ~sp~~-~lA~e~gIdl~~v~gtg~dv   95 (431)
                      ++|++ ++|+|+|||++.++|||.+.
T Consensus         5 asP~ar~la~e~gidl~~v~gtG~~G   30 (39)
T PF02817_consen    5 ASPAARKLAAELGIDLSQVKGTGPGG   30 (39)
T ss_dssp             CSHHHHHHHHHTT--GGGSSSSSTTS
T ss_pred             cCHHHHHHHHHcCCCcccccccCCCC
Confidence            45666 99999999999999998654

Proteins containing this domain include the branched-chain alpha-keto acid dehydrogenase complex of bacteria, which catalyses the overall conversion of alpha-keto acids to acyl-CoA and carbon dioxide; and the E-3 binding protein of eukaryotic pyruvate dehydrogenase.; GO: 0016746 transferase activity, transferring acyl groups, 0008152 metabolic process; PDB: 1BBL_A 1W4H_A 1BAL_A 2WXC_A 2BTH_A 2BTG_A 2CYU_A 2EQ7_C 2EQ8_C 3RNM_E ....

>PF13533 Biotin_lipoyl_2: Biotin-lipoyl like

Probab=92.10  E-value=0.17  Score=36.69  Aligned_cols=27  Identities=19%  Similarity=0.289  Sum_probs=22.9

Q ss_pred             cceeeeeecCCCCeEecCceeEEEecC
Q psy14345         11 KKFLLLASLEDGATVKAGQQLFKIKPT   37 (431)
Q Consensus        11 ~~~~l~~~~~eGd~v~VG~~L~~Ie~~   37 (431)
                      +-.+-.+++++||.|+.|++|++|+..
T Consensus        10 ~G~V~~v~V~~G~~VkkGd~L~~ld~~   36 (50)
T PF13533_consen   10 SGRVESVYVKEGQQVKKGDVLLVLDSP   36 (50)
T ss_pred             CEEEEEEEecCCCEEcCCCEEEEECcH
Confidence            345667799999999999999999954

>PRK13757 chloramphenicol acetyltransferase; Provisional

Probab=91.98  E-value=1.6  Score=41.73  Aligned_cols=77  Identities=14%  Similarity=0.112  Sum_probs=61.7

Q ss_pred             ccCCcchHHHHHHHHhhcCCccceeeeCCeeEEcCCcceEEEEecCC-Ceeece-ecCcccCCHHHHHHHHHHHHHHHHc
Q psy14345        350 KLGFMSPFIKASAYALQDQPVVNAVIEGTDIVYRDYVDISVAVATPK-GLVVPV-IRNVEAMNFADIELTIAALGEKART  427 (431)
Q Consensus       350 klt~~~~~~ka~~~aL~~~P~~Na~~~~~~i~~~~~vnigvAV~~~~-GL~vPv-i~~a~~~~l~~ia~~~~~l~~~ar~  427 (431)
                      ++++...++.|+.+|+-++|++.-++.++++..++.+|.+..|-.++ +.+.-+ +.-  .-++.+..+...+.++++.+
T Consensus        52 ~~~fy~~~ly~v~kavN~~~eFR~r~~~~~v~~~D~i~ps~Ti~~~~~~tFs~~~~~y--~~df~~F~~~~~~~~~~~~~  129 (219)
T PRK13757         52 KHKFYPAFIHILARLMNAHPEFRMAMKDGELVIWDSVHPCYTVFHEQTETFSSLWSEY--HDDFRQFLHIYSQDVACYGE  129 (219)
T ss_pred             CCChHHHHHHHHHHHHhcCHhHheEEECCeEEEEeEEeeeEEEEeCCCceEEEEEecC--cCCHHHHHHHHHHHHHHHhc
Confidence            67899999999999999999999999999999999999999999655 455433 333  34566777777777777776


Q ss_pred             C
Q psy14345        428 G  428 (431)
Q Consensus       428 g  428 (431)
                      .
T Consensus       130 ~  130 (219)
T PRK13757        130 N  130 (219)
T ss_pred             C
Confidence            4

>COG4845 Chloramphenicol O-acetyltransferase [Defense mechanisms]

Probab=91.72  E-value=1.1  Score=42.04  Aligned_cols=101  Identities=14%  Similarity=0.075  Sum_probs=77.1

Q ss_pred             EeeeeeeeeeeeeeeeehHHHHHHHHHHHhHhhhhhhcccccCCcchHHHHHHHHhhcCCccceeeeCCeeEEcCCcceE
Q psy14345        310 VKPMMYVALTYDHRLIDGREAVLFLQKEAHLEAFQKKYGLKLGFMSPFIKASAYALQDQPVVNAVIEGTDIVYRDYVDIS  389 (431)
Q Consensus       310 ~~~~m~lslt~DHRvIDg~~a~~fl~~lk~l~~~~~~~~~klt~~~~~~ka~~~aL~~~P~~Na~~~~~~i~~~~~vnig  389 (431)
                      ..|+..+++..|.        ..|...+++.         +++++..++.|+.+++.+|+++.-++.++...+++.++..
T Consensus        27 ~~p~y~i~~~LDv--------tn~~~~vk~~---------~l~Ff~a~l~avtr~~n~~~EFRlr~~~~~~~~~d~v~p~   89 (219)
T COG4845          27 QYPHYDINLQLDV--------TNFYGYVKEN---------GLSFFPALLYAVTRCANRHQEFRLRIQNGQLGYWDNVPPM   89 (219)
T ss_pred             ccceEeeeeeeeh--------hHHHHHHHHc---------CCcchHHHHHHHHHHhcccHHhHhhhcCCeeEEeecCCcc
Confidence            3455666655442        4566666532         7899999999999999999999999999999999999999


Q ss_pred             EEEecCCC-eeeceecCcccCCHHHHHHHHHHHHHHHHcC
Q psy14345        390 VAVATPKG-LVVPVIRNVEAMNFADIELTIAALGEKARTG  428 (431)
Q Consensus       390 vAV~~~~G-L~vPvi~~a~~~~l~~ia~~~~~l~~~ar~g  428 (431)
                      ..|..+++ ++.-+ ----+.+..+.++-...=+++.+++
T Consensus        90 ~tv~~~~~e~Fs~l-~~e~~~~~~dF~q~y~~~ie~~~~~  128 (219)
T COG4845          90 YTVFHGETETFSVL-WTEYQEDYEDFAQLYIEDIEQYGAN  128 (219)
T ss_pred             eEEEcCCCcEEEEE-eccccccHHHHHHHHHHHHHHhccC
Confidence            99999665 44333 2225778888888777777777765

>PRK06748 hypothetical protein; Validated

Probab=90.73  E-value=0.33  Score=39.32  Aligned_cols=26  Identities=8%  Similarity=0.258  Sum_probs=14.9

Q ss_pred             ccceeeeeecCCCCeEecCceeEEEe
Q psy14345         10 NKKFLLLASLEDGATVKAGQQLFKIK   35 (431)
Q Consensus        10 ~~~~~l~~~~~eGd~v~VG~~L~~Ie   35 (431)
                      .+-++..+.+++||+|++|++|++|+
T Consensus        49 ~~G~v~~i~v~~Gd~V~vG~~la~I~   74 (83)
T PRK06748         49 ISGYIESLEVVEGQAIADQKLLITVR   74 (83)
T ss_pred             CCEEEEEEEeCCCCEECCCCEEEEEE
Confidence            34445555566666666666666664

>PRK06748 hypothetical protein; Validated

Probab=87.63  E-value=0.71  Score=37.36  Aligned_cols=37  Identities=8%  Similarity=-0.097  Sum_probs=27.7

Q ss_pred             cccccccccceeeeeecCCCCeEecCceeEEEec-CCC
Q psy14345          3 YNLLKQNNKKFLLLASLEDGATVKAGQQLFKIKP-TAT   39 (431)
Q Consensus         3 ~~~~~~~~~~~~l~~~~~eGd~v~VG~~L~~Ie~-~~~   39 (431)
                      |.-..+-=.--+...++++||.|+.|++|+.||+ ...
T Consensus         4 ~~~v~sp~~G~I~~w~vk~GD~V~~gd~l~~IETMdK~   41 (83)
T PRK06748          4 IEGVYSPCYGKVEKLFVRESSYVYEWEKLALIETIDKQ   41 (83)
T ss_pred             eeEEecCCcEEEEEEEeCCCCEECCCCEEEEEEcCCCc
Confidence            3344444445567779999999999999999997 543

>COG0511 AccB Biotin carboxyl carrier protein [Lipid metabolism]

Probab=86.60  E-value=0.62  Score=41.39  Aligned_cols=22  Identities=45%  Similarity=0.480  Sum_probs=20.2

Q ss_pred             eeeeecCCCCeEecCceeEEEe
Q psy14345         14 LLLASLEDGATVKAGQQLFKIK   35 (431)
Q Consensus        14 ~l~~~~~eGd~v~VG~~L~~Ie   35 (431)
                      ++++.|++||+|+.||+||.||
T Consensus        81 v~~~~V~vGd~V~~Gq~l~IiE  102 (140)
T COG0511          81 VYKPFVEVGDTVKAGQTLAIIE  102 (140)
T ss_pred             EEEEeeccCCEEcCCCEEEEEE
Confidence            4558999999999999999999

>PF00364 Biotin_lipoyl: Biotin-requiring enzyme; InterPro: IPR000089 The biotin / lipoyl attachment domain has a conserved lysine residue that binds biotin or lipoic acid

Probab=83.87  E-value=1.2  Score=34.75  Aligned_cols=26  Identities=31%  Similarity=0.321  Sum_probs=16.9

Q ss_pred             cccceeeeeecCCCCeEecCceeEEE
Q psy14345          9 NNKKFLLLASLEDGATVKAGQQLFKI   34 (431)
Q Consensus         9 ~~~~~~l~~~~~eGd~v~VG~~L~~I   34 (431)
                      ..+-++..+.+++||.|.+|++|++|
T Consensus        49 ~~~G~i~~i~v~~G~~V~~G~~l~~I   74 (74)
T PF00364_consen   49 PVSGIIKEILVEEGDTVEVGQVLAII   74 (74)
T ss_dssp             SSSEEEEEESSTTTEEEETTSEEEEE
T ss_pred             CCCEEEEEEEECCCCEECCCCEEEEC
Confidence            34445556677777777777777765

Biotin plays a catalytic role in some carboxyl transfer reactions and is covalently attached, via an amide bond, to a lysine residue in enzymes requiring this coenzyme []. E2 acyltransferases have an essential cofactor, lipoic acid, which is covalently bound via an amide linkage to a lysine group []. The lipoic acid cofactor is found in a variety of proteins that include, H-protein of the glycine cleavage system (GCS), mammalian and yeast pyruvate dehydrogenases and fast migrating protein (FMP) (gene acoC) from Ralstonia eutropha (Alcaligenes eutrophus).; PDB: 2EJG_D 2D5D_A 2EJF_C 2EVB_A 1IYV_A 1IYU_A 1LAC_A 1LAB_A 1DCZ_A 1DD2_A ....

>PF00364 Biotin_lipoyl: Biotin-requiring enzyme; InterPro: IPR000089 The biotin / lipoyl attachment domain has a conserved lysine residue that binds biotin or lipoic acid

Probab=81.73  E-value=1.4  Score=34.45  Aligned_cols=27  Identities=26%  Similarity=0.324  Sum_probs=22.3

Q ss_pred             eeeeeecCCCCeEecCceeEEEecCCC
Q psy14345         13 FLLLASLEDGATVKAGQQLFKIKPTAT   39 (431)
Q Consensus        13 ~~l~~~~~eGd~v~VG~~L~~Ie~~~~   39 (431)
                      .+...++++||.|+.|++||.||+...
T Consensus        16 ~i~~~~v~~G~~V~~G~~l~~iet~K~   42 (74)
T PF00364_consen   16 TITKWLVEEGDKVKKGDPLAEIETMKM   42 (74)
T ss_dssp             EEEEESSSTTEEESTTSEEEEEESSSE
T ss_pred             ceeEEEECCCCEEEcCceEEEEEcCcc
Confidence            344459999999999999999996544

Biotin plays a catalytic role in some carboxyl transfer reactions and is covalently attached, via an amide bond, to a lysine residue in enzymes requiring this coenzyme []. E2 acyltransferases have an essential cofactor, lipoic acid, which is covalently bound via an amide linkage to a lysine group []. The lipoic acid cofactor is found in a variety of proteins that include, H-protein of the glycine cleavage system (GCS), mammalian and yeast pyruvate dehydrogenases and fast migrating protein (FMP) (gene acoC) from Ralstonia eutropha (Alcaligenes eutrophus).; PDB: 2EJG_D 2D5D_A 2EJF_C 2EVB_A 1IYV_A 1IYU_A 1LAC_A 1LAB_A 1DCZ_A 1DD2_A ....

>PRK07051 hypothetical protein; Validated

Probab=80.72  E-value=2.1  Score=34.01  Aligned_cols=29  Identities=31%  Similarity=0.398  Sum_probs=18.4

Q ss_pred             cccccceeeeeecCCCCeEecCceeEEEe
Q psy14345          7 KQNNKKFLLLASLEDGATVKAGQQLFKIK   35 (431)
Q Consensus         7 ~~~~~~~~l~~~~~eGd~v~VG~~L~~Ie   35 (431)
                      ....+-.+..+.+++||.|..|++|++|+
T Consensus        51 ~a~~~G~v~~i~~~~G~~V~~G~~l~~i~   79 (80)
T PRK07051         51 EAEAAGRVVEFLVEDGEPVEAGQVLARIE   79 (80)
T ss_pred             eCCCCEEEEEEEcCCcCEECCCCEEEEEe
Confidence            34445555666677777777777777664

>PRK05889 putative acetyl-CoA carboxylase biotin carboxyl carrier protein subunit; Provisional

Probab=80.45  E-value=1.9  Score=33.40  Aligned_cols=27  Identities=15%  Similarity=0.311  Sum_probs=22.7

Q ss_pred             ceeeeeecCCCCeEecCceeEEEecCC
Q psy14345         12 KFLLLASLEDGATVKAGQQLFKIKPTA   38 (431)
Q Consensus        12 ~~~l~~~~~eGd~v~VG~~L~~Ie~~~   38 (431)
                      --+...++++||.|+.|++|+.||.-.
T Consensus        11 G~i~~~~v~~Gd~V~~g~~l~~ve~~K   37 (71)
T PRK05889         11 ASVLEVVVNEGDQIGKGDTLVLLESMK   37 (71)
T ss_pred             EEEEEEEeCCCCEECCCCEEEEEEecc
Confidence            345667999999999999999999654

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	431
1c4t_A	233	Catalytic Domain From Trimeric Dihydrolipoamide Suc		2e-60
1c4t_A	233	Catalytic Domain From Trimeric Dihydrolipoamide Suc		1e-22
3mae_A	256	Crystal Structure Of Probable Dihydrolipamide Acety		6e-23
3mae_A	256	Crystal Structure Of Probable Dihydrolipamide Acety		4e-09
1b5s_A	242	Dihydrolipoyl Transacetylase (E.C.2.3.1.12) Catalyt		5e-20
1b5s_A	242	Dihydrolipoyl Transacetylase (E.C.2.3.1.12) Catalyt		5e-10
3duf_I	428	Snapshots Of Catalysis In The E1 Subunit Of The Pyr		1e-19
3duf_I	428	Snapshots Of Catalysis In The E1 Subunit Of The Pyr		6e-10
3rqc_A	224	Crystal Structure Of The Catalytic Core Of The 2-Ox		4e-13
3l60_A	250	Crystal Structure Of Branched-Chain Alpha-Keto Acid		8e-13
1dpc_A	243	Crystallographic And Enzymatic Investigations On Th		1e-12
1dpc_A	243	Crystallographic And Enzymatic Investigations On Th		1e-07
1eaa_A	243	Atomic Structure Of The Cubic Core Of The Pyruvate		1e-12
1eaa_A	243	Atomic Structure Of The Cubic Core Of The Pyruvate		5e-08
2ihw_A	262	Crystal Structure Of A Cubic Core Of The Dihydrolip		5e-12
2ihw_A	262	Crystal Structure Of A Cubic Core Of The Dihydrolip		4e-06
3b8k_A	239	Structure Of The Truncated Human Dihydrolipoyl Acet		7e-12
3b8k_A	239	Structure Of The Truncated Human Dihydrolipoyl Acet		9e-06
1dpd_A	243	Crystallographic And Enzymatic Investigations On Th		8e-12
1dpd_A	243	Crystallographic And Enzymatic Investigations On Th		1e-07
1dpb_A	243	Crystallographic And Enzymatic Investigations On Th		5e-11
1dpb_A	243	Crystallographic And Enzymatic Investigations On Th		1e-07
2xt6_A	1113	Crystal Structure Of Mycobacterium Smegmatis Alpha-		2e-04

>pdb|1C4T|A Chain A, Catalytic Domain From Trimeric Dihydrolipoamide Succinyltransferase Length = 233

Iteration: 1
 Score =  229 bits (584), Expect = 2e-60,   Method: Compositional matrix adjust.
 Identities = 119/232 (51%), Positives = 160/232 (68%), Gaps = 17/232 (7%)
Query: 103 RSEQRVKMNRMRQRIAQRLKEAQNVNAMLTTFNEIDMSAIIEFRKAHLEAFQKKYGLKLG 162
           RSE+RV M R+R+R+A+RL EA+N  AMLTTFNE++M  I++ RK + EAF+K++G++LG
Sbjct: 2   RSEKRVPMTRLRKRVAERLLEAKNSTAMLTTFNEVNMKPIMDLRKQYGEAFEKRHGIRLG 61
Query: 163 FMSPFIKASAYALQDQPVVNAVIEGTDIVYRDYVDISVGMGRNESNLPRWCFNGLLSGVL 222
           FMS ++KA   AL+  P VNA I+G D+VY +Y D+S+ +     + PR    GL++ VL
Sbjct: 62  FMSFYVKAVVEALKRYPEVNASIDGDDVVYHNYFDVSMAV-----STPR----GLVTPVL 112
Query: 223 VLTEHLNGKYCVSSRPSYERHTTGWACYDRLNWNLAIEDSDGGTFTISNGGVFGSLLGTP 282
              + L            E+     A   R +  L +ED  GG FTI+NGGVFGSL+ TP
Sbjct: 113 RDVDTL-------GMADIEKKIKELAVKGR-DGKLTVEDLTGGNFTITNGGVFGSLMSTP 164
Query: 283 IINPPQSAILGMHGTFERPVAIKGQVVVKPMMYVALTYDHRLIDGREAVLFL 334
           IINPPQSAILGMH   +RP+A+ GQV + PMMY+AL+YDHRLIDGRE+V FL
Sbjct: 165 IINPPQSAILGMHAIKDRPMAVNGQVEILPMMYLALSYDHRLIDGRESVGFL 216

>pdb|1C4T|A Chain A, Catalytic Domain From Trimeric Dihydrolipoamide Succinyltransferase Length = 233

Iteration: 1
 Score =  103 bits (258), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 48/91 (52%), Positives = 67/91 (73%)
Query: 341 EAFQKKYGLKLGFMSPFIKASAYALQDQPVVNAVIEGTDIVYRDYVDISVAVATPKGLVV 400
           EAF+K++G++LGFMS ++KA   AL+  P VNA I+G D+VY +Y D+S+AV+TP+GLV 
Sbjct: 50  EAFEKRHGIRLGFMSFYVKAVVEALKRYPEVNASIDGDDVVYHNYFDVSMAVSTPRGLVT 109
Query: 401 PVIRNVEAMNFADIELTIAALGEKARTGKYT 431
           PV+R+V+ +  ADIE  I  L  K R GK T
Sbjct: 110 PVLRDVDTLGMADIEKKIKELAVKGRDGKLT 140

>pdb|3MAE|A Chain A, Crystal Structure Of Probable Dihydrolipamide Acetyltransferase From Listeria Monocytogenes 4b F2365 Length = 256

Iteration: 1
 Score =  105 bits (261), Expect = 6e-23,   Method: Compositional matrix adjust.
 Identities = 76/258 (29%), Positives = 129/258 (50%), Gaps = 18/258 (6%)
Query: 90  LPPADPTKEISGTRSEQRVKMNRMRQRIAQRLKEAQNVNAMLTTFNEIDMSAIIEFRKAH 149
           L  A PT  +     ++ + +N +R+ IA+ +  ++          E+D + ++ +R A 
Sbjct: 3   LKAAMPTPPVRSAAGDKEIPINGVRKAIAKHMSVSKQEIPHAWMMVEVDATGLVRYRNAV 62
Query: 150 LEAFQKKYGLKLGFMSPFIKASAYALQDQPVVNAVIEGTDIVYRDYVDISVGMGRNESNL 209
            ++F+K+ G  L + + FIKA A AL++ P +N+   G  I+    ++IS+ +       
Sbjct: 63  KDSFKKEEGYSLTYFAFFIKAVAQALKEFPQLNSTWAGDKIIEHANINISIAIAA----- 117
Query: 210 PRWCFNGLLSGVLVLTEHLNGKYCVSSRPSYERHTTGWACYDRLNWNLAIEDSDGGTFTI 269
                 G L  V V+           S     R  +  A   R N  L+  D +GGTFT+
Sbjct: 118 ------GDLLYVPVIKNADE-----KSIKGIAREISELAGKAR-NGKLSQADMEGGTFTV 165
Query: 270 SNGGVFGSLLGTPIINPPQSAILGMHGTFERPVAIKGQVVVKPMMYVALTYDHRLIDGRE 329
           ++ G FGS+    IIN PQ+AIL +    +RPV I   + V+ M+ + L+ DHR++DG  
Sbjct: 166 NSTGSFGSVQSMGIINHPQAAILQVESIVKRPVIIDDMIAVRDMVNLCLSIDHRILDGLL 225
Query: 330 AVLFLQK-EAHLEAFQKK 346
           A  FLQ  +A++E   K+
Sbjct: 226 AGKFLQAIKANVEKISKE 243

>pdb|3MAE|A Chain A, Crystal Structure Of Probable Dihydrolipamide Acetyltransferase From Listeria Monocytogenes 4b F2365 Length = 256

Iteration: 1
 Score = 59.3 bits (142), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 33/91 (36%), Positives = 53/91 (58%)
Query: 341 EAFQKKYGLKLGFMSPFIKASAYALQDQPVVNAVIEGTDIVYRDYVDISVAVATPKGLVV 400
           ++F+K+ G  L + + FIKA A AL++ P +N+   G  I+    ++IS+A+A    L V
Sbjct: 64  DSFKKEEGYSLTYFAFFIKAVAQALKEFPQLNSTWAGDKIIEHANINISIAIAAGDLLYV 123
Query: 401 PVIRNVEAMNFADIELTIAALGEKARTGKYT 431
           PVI+N +  +   I   I+ L  KAR GK +
Sbjct: 124 PVIKNADEKSIKGIAREISELAGKARNGKLS 154

>pdb|1B5S|A Chain A, Dihydrolipoyl Transacetylase (E.C.2.3.1.12) Catalytic Domain (Residues 184-425) From Bacillus Stearothermophilus Length = 242

Iteration: 1
 Score = 95.5 bits (236), Expect = 5e-20,   Method: Compositional matrix adjust.
 Identities = 64/232 (27%), Positives = 115/232 (49%), Gaps = 20/232 (8%)
Query: 101 GTRSEQRVKMNRMRQRIAQRLKEAQNVNAMLTTFNEIDMSAIIEFRKAHLEAFQKKYGLK 160
           G   E R KM+ +R+ IA+ +  +++    +T  +E D++ ++  RK   +A   + G+K
Sbjct: 10  GEFPETREKMSGIRRAIAKAMVHSKHTAPHVTLMDEADVTKLVAHRKK-FKAIAAEKGIK 68
Query: 161 LGFMSPFIKASAYALQDQPVVNAVI--EGTDIVYRDYVDISVGMGRNESNLPRWCFNGLL 218
           L F+   +KA   AL++ PV+N  I  E  +I+ + Y +I +    +   L     +   
Sbjct: 69  LTFLPYVVKALVSALREYPVLNTSIDDETEEIIQKHYYNIGIAADTDRGLLVPVIKHADR 128
Query: 219 SGVLVLTEHLNGKYCVSSRPSYERHTTGWACYDRLNWNLAIEDSDGGTFTISNGGVFGSL 278
             +  L + +N +    +R                +  L   +  G + TI+N G  G  
Sbjct: 129 KPIFALAQEIN-ELAEKAR----------------DGKLTPGEMKGASCTITNIGSAGGQ 171
Query: 279 LGTPIINPPQSAILGMHGTFERPVAIKGQVVVKPMMYVALTYDHRLIDGREA 330
             TP+IN P+ AILG+    E+P+   G++V  PM+ ++L++DHR+IDG  A
Sbjct: 172 WFTPVINHPEVAILGIGRIAEKPIVRDGEIVAAPMLALSLSFDHRMIDGATA 223

>pdb|1B5S|A Chain A, Dihydrolipoyl Transacetylase (E.C.2.3.1.12) Catalytic Domain (Residues 184-425) From Bacillus Stearothermophilus Length = 242

Iteration: 1
 Score = 62.4 bits (150), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 40/128 (31%), Positives = 66/128 (51%), Gaps = 3/128 (2%)
Query: 307 QVVVKPMMYVALTYDH-RLIDGREAVLFLQKEAHLEAFQKKYGLKLGFMSPFIKASAYAL 365
           + + K M++   T  H  L+D  +    +      +A   + G+KL F+   +KA   AL
Sbjct: 24  RAIAKAMVHSKHTAPHVTLMDEADVTKLVAHRKKFKAIAAEKGIKLTFLPYVVKALVSAL 83
Query: 366 QDQPVVNAVI--EGTDIVYRDYVDISVAVATPKGLVVPVIRNVEAMNFADIELTIAALGE 423
           ++ PV+N  I  E  +I+ + Y +I +A  T +GL+VPVI++ +      +   I  L E
Sbjct: 84  REYPVLNTSIDDETEEIIQKHYYNIGIAADTDRGLLVPVIKHADRKPIFALAQEINELAE 143
Query: 424 KARTGKYT 431
           KAR GK T
Sbjct: 144 KARDGKLT 151

>pdb|3DUF|I Chain I, Snapshots Of Catalysis In The E1 Subunit Of The Pyruvate Dehydrogenase Multi-Enzyme Complex Length = 428

Iteration: 1
 Score = 94.7 bits (234), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 64/233 (27%), Positives = 115/233 (49%), Gaps = 20/233 (8%)
Query: 100 SGTRSEQRVKMNRMRQRIAQRLKEAQNVNAMLTTFNEIDMSAIIEFRKAHLEAFQKKYGL 159
            G   E R KM+ +R+ IA+ +  +++    +T  +E D++ ++  RK   +A   + G+
Sbjct: 193 EGEFPETREKMSGIRRAIAKAMVHSKHTAPHVTLMDEADVTKLVAHRK-KFKAIAAEKGI 251
Query: 160 KLGFMSPFIKASAYALQDQPVVNAVI--EGTDIVYRDYVDISVGMGRNESNLPRWCFNGL 217
           KL F+   +KA   AL++ PV+N  I  E  +I+ + Y +I +    +   L     +  
Sbjct: 252 KLTFLPYVVKALVSALREYPVLNTSIDDETEEIIQKHYYNIGIAADTDRGLLVPVIKHAD 311
Query: 218 LSGVLVLTEHLNGKYCVSSRPSYERHTTGWACYDRLNWNLAIEDSDGGTFTISNGGVFGS 277
              +  L + +N +    +R                +  L   +  G + TI+N G  G 
Sbjct: 312 RKPIFALAQEIN-ELAEKAR----------------DGKLTPGEMKGASCTITNIGSAGG 354
Query: 278 LLGTPIINPPQSAILGMHGTFERPVAIKGQVVVKPMMYVALTYDHRLIDGREA 330
              TP+IN P+ AILG+    E+P+   G++V  PM+ ++L++DHR+IDG  A
Sbjct: 355 QWFTPVINHPEVAILGIGRIAEKPIVRDGEIVAAPMLALSLSFDHRMIDGATA 407

>pdb|3DUF|I Chain I, Snapshots Of Catalysis In The E1 Subunit Of The Pyruvate Dehydrogenase Multi-Enzyme Complex Length = 428

Iteration: 1
 Score = 62.0 bits (149), Expect = 6e-10,   Method: Compositional matrix adjust.
 Identities = 40/128 (31%), Positives = 66/128 (51%), Gaps = 3/128 (2%)
Query: 307 QVVVKPMMYVALTYDH-RLIDGREAVLFLQKEAHLEAFQKKYGLKLGFMSPFIKASAYAL 365
           + + K M++   T  H  L+D  +    +      +A   + G+KL F+   +KA   AL
Sbjct: 208 RAIAKAMVHSKHTAPHVTLMDEADVTKLVAHRKKFKAIAAEKGIKLTFLPYVVKALVSAL 267
Query: 366 QDQPVVNAVI--EGTDIVYRDYVDISVAVATPKGLVVPVIRNVEAMNFADIELTIAALGE 423
           ++ PV+N  I  E  +I+ + Y +I +A  T +GL+VPVI++ +      +   I  L E
Sbjct: 268 REYPVLNTSIDDETEEIIQKHYYNIGIAADTDRGLLVPVIKHADRKPIFALAQEINELAE 327
Query: 424 KARTGKYT 431
           KAR GK T
Sbjct: 328 KARDGKLT 335

>pdb|3RQC|A Chain A, Crystal Structure Of The Catalytic Core Of The 2-Oxoacid Dehydrogenase Multienzyme Complex From Thermoplasma Acidophilum Length = 224

Iteration: 1
 Score = 72.8 bits (177), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 64/232 (27%), Positives = 116/232 (50%), Gaps = 32/232 (13%)
Query: 105 EQRVKMNRMRQRIAQRLKEAQNVNAMLTTFNEIDMSAIIEFRKAHLEAFQKKYGLKLGFM 164
           E+ ++M+ +R+ I  ++ +A+ +    T   E+D+++++    +  +A  +K  +  GF+
Sbjct: 6   EEILEMHGLRRIIFDKMTKAKQIMPHFTVMEEVDVTSMVSILDSA-KARNRKVTVT-GFL 63
Query: 165 SPFIKASAYALQDQPVVNAVIEGTDIVY--RDYVDISVGMGRNESNLPRWCFNGLLSGVL 222
           +  + +    L+  P +NA+ + T  VY  + Y +I + +     + P    +GL   V 
Sbjct: 64  ARIVPS---ILKQYPYLNAIYDETRRVYILKKYYNIGIAV-----DTP----DGL--NVF 109
Query: 223 VLTEHLNGKYCVSSRPSYERHTTGWACYDRLNWNLAIEDSDGGTFTISNGGVFGSLLGTP 282
           V+ +         S        +  A   R N  L +++    TFTI+N G  G ++ TP
Sbjct: 110 VIKDADR-----KSMVEISAEISDKASRAREN-KLQLDEVQDSTFTITNVGTIGGIMSTP 163
Query: 283 IINPPQSAILGMHGTFERPVAIKGQVVVKPMMYVALTYDHRLIDGREAVLFL 334
           IIN P+ AILG+H   ER    +G    +  MY++L+ DHRLIDG  A  F+
Sbjct: 164 IINYPEVAILGVHRILER----EG----RKYMYLSLSCDHRLIDGAVATRFI 207

>pdb|3L60|A Chain A, Crystal Structure Of Branched-Chain Alpha-Keto Acid Dehydrogenase Subunit E2 From Mycobacterium Tuberculosis Length = 250

Iteration: 1
 Score = 71.6 bits (174), Expect = 8e-13,   Method: Compositional matrix adjust.
 Identities = 31/71 (43%), Positives = 45/71 (63%)
Query: 264 GGTFTISNGGVFGSLLGTPIINPPQSAILGMHGTFERPVAIKGQVVVKPMMYVALTYDHR 323
           G TFT+SN G  G   G P+IN P++AILG+     RPV + G+VV +P M +   +DHR
Sbjct: 155 GSTFTVSNFGALGVDDGVPVINHPEAAILGLGAIKPRPVVVGGEVVARPTMTLTCVFDHR 214
Query: 324 LIDGREAVLFL 334
           ++DG +   F+
Sbjct: 215 VVDGAQVAQFM 225

>pdb|1DPC|A Chain A, Crystallographic And Enzymatic Investigations On The Role Of Ser558, His610 And Asn614 In The Catalytic Mechanism Of Azotobacter Vinelandii Dihydrolipoamide Acetyltransferase (E2p) Length = 243

Iteration: 1
 Score = 71.2 bits (173), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 72/255 (28%), Positives = 116/255 (45%), Gaps = 21/255 (8%)
Query: 90  LPPADPTKEISGTRSEQRVKMNRMRQRIAQRLKEAQNVNAMLTTFNEIDMSAIIEFRKAH 149
           +PP  P  + +     + V M R+ Q  A  L  +      +T F   D++ +  FR A 
Sbjct: 1   IPPIPPV-DFAKYGEIEEVPMTRLMQIGATNLHRSWLNVPHVTQFESADITELEAFRVAQ 59
Query: 150 LEAFQKKYGLKLGFMSPFIKASAYALQDQPVVNAVI--EGTDIVYRDYVDISVGMGRNES 207
            +A  +K G+KL  +   +KA AY L++ P  N+ +   G  ++ + YV I   +     
Sbjct: 60  -KAVAEKAGVKLTVLPLLLKACAYLLKELPDFNSSLAPSGQALIRKKYVHIGFAV----- 113
Query: 208 NLPRWCFNGLLSGVLVLTEHLNGKYCVSSRPSYERHTTGWACYDRLNWNLAIEDSDGGTF 267
           + P    +GLL  V+    +++ K    S           A   R +  L  +   G  F
Sbjct: 114 DTP----DGLLVPVI---RNVDQK----SLLQLAAEAAELAEKAR-SKKLGADAMQGACF 161
Query: 268 TISNGGVFGSLLGTPIINPPQSAILGMHGTFERPVAIKGQVVVKPMMYVALTYDHRLIDG 327
           TIS+ G  G    TPI+N P+ AILG+     +PV        + M+ ++L+YDHR+IDG
Sbjct: 162 TISSLGHIGGTAFTPIVNAPEVAILGVSKASMQPVWDGKAFQPRLMLPLSLSYDHRVIDG 221
Query: 328 REAVLFLQKEAHLEA 342
             A  F ++   L A
Sbjct: 222 AAAARFTKRLGDLLA 236

>pdb|1DPC|A Chain A, Crystallographic And Enzymatic Investigations On The Role Of Ser558, His610 And Asn614 In The Catalytic Mechanism Of Azotobacter Vinelandii Dihydrolipoamide Acetyltransferase (E2p) Length = 243

Iteration: 1
 Score = 53.9 bits (128), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 32/77 (41%), Positives = 46/77 (59%), Gaps = 9/77 (11%)
Query: 340 LEAFQ-------KKYGLKLGFMSPFIKASAYALQDQPVVNAVI--EGTDIVYRDYVDISV 390
           LEAF+       +K G+KL  +   +KA AY L++ P  N+ +   G  ++ + YV I  
Sbjct: 52  LEAFRVAQKAVAEKAGVKLTVLPLLLKACAYLLKELPDFNSSLAPSGQALIRKKYVHIGF 111
Query: 391 AVATPKGLVVPVIRNVE 407
           AV TP GL+VPVIRNV+
Sbjct: 112 AVDTPDGLLVPVIRNVD 128

>pdb|1EAA|A Chain A, Atomic Structure Of The Cubic Core Of The Pyruvate Dehydrogenase Multienzyme Complex Length = 243

Iteration: 1
 Score = 70.9 bits (172), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 71/255 (27%), Positives = 114/255 (44%), Gaps = 21/255 (8%)
Query: 90  LPPADPTKEISGTRSEQRVKMNRMRQRIAQRLKEAQNVNAMLTTFNEIDMSAIIEFRKAH 149
           +PP  P  + +     + V M R+ Q  A  L  +      +T F   D++ +  FR A 
Sbjct: 1   IPPIPPV-DFAKYGEIEEVPMTRLMQIGATNLHRSWLNVPHVTQFESADITELEAFRVAQ 59
Query: 150 LEAFQKKYGLKLGFMSPFIKASAYALQDQPVVNAVI--EGTDIVYRDYVDISVGMGRNES 207
            +A  KK G+KL  +   +KA AY L++ P  N+ +   G  ++ + YV I   +   + 
Sbjct: 60  -KAVAKKAGVKLTVLPLLLKACAYLLKELPDFNSSLAPSGQALIRKKYVHIGFAVDTPD- 117
Query: 208 NLPRWCFNGLLSGVLVLTEHLNGKYCVSSRPSYERHTTGWACYDRLNWNLAIEDSDGGTF 267
                   GLL  V+    +++ K    S           A   R +  L  +   G  F
Sbjct: 118 --------GLLVPVI---RNVDQK----SLLQLAAEAAELAEKAR-SKKLGADAMQGACF 161
Query: 268 TISNGGVFGSLLGTPIINPPQSAILGMHGTFERPVAIKGQVVVKPMMYVALTYDHRLIDG 327
           TIS+ G  G    TPI+N P+ AILG+     +PV        + M+ ++L+YDHR+I+G
Sbjct: 162 TISSLGHIGGTAFTPIVNAPEVAILGVSKASMQPVWDGKAFQPRLMLPLSLSYDHRVING 221
Query: 328 REAVLFLQKEAHLEA 342
             A  F ++   L A
Sbjct: 222 AAAARFTKRLGDLLA 236

>pdb|1EAA|A Chain A, Atomic Structure Of The Cubic Core Of The Pyruvate Dehydrogenase Multienzyme Complex Length = 243

Iteration: 1
 Score = 55.8 bits (133), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 33/77 (42%), Positives = 46/77 (59%), Gaps = 9/77 (11%)
Query: 340 LEAFQ-------KKYGLKLGFMSPFIKASAYALQDQPVVNAVI--EGTDIVYRDYVDISV 390
           LEAF+       KK G+KL  +   +KA AY L++ P  N+ +   G  ++ + YV I  
Sbjct: 52  LEAFRVAQKAVAKKAGVKLTVLPLLLKACAYLLKELPDFNSSLAPSGQALIRKKYVHIGF 111
Query: 391 AVATPKGLVVPVIRNVE 407
           AV TP GL+VPVIRNV+
Sbjct: 112 AVDTPDGLLVPVIRNVD 128

>pdb|2IHW|A Chain A, Crystal Structure Of A Cubic Core Of The Dihydrolipoamide Acyltransferase (E2b) Component In The Branched-Chain Alpha-Ketoacid Dehydrogenase Complex (Bckdc), Apo Form Length = 262

Iteration: 1
 Score = 68.9 bits (167), Expect = 5e-12,   Method: Compositional matrix adjust.
 Identities = 55/197 (27%), Positives = 91/197 (46%), Gaps = 23/197 (11%)
Query: 135 NEIDMSAIIEFRKAHLEAFQKKYGLKLGFMSPFIKASAYALQDQPVVNAVIEGT--DIVY 192
           +E+D++ +++ R+  L+      G+KL FM  F+KA++  L   P++NA ++    +I Y
Sbjct: 60  DEVDLTELVKLRE-ELKPIAFARGIKLSFMPFFLKAASLGLLQFPILNASVDENCQNITY 118
Query: 193 RDYVDISVGMGRNESNLPRWCFNGLLSGVLVLTEHLNGKYCVSSRPSYERHTTGWACYDR 252
           +   +I + M   +  +     N  +  +  +   LN    + S                
Sbjct: 119 KASHNIGIAMDTEQGLIVPNVKNVQIRSIFEIATELNRLQKLGSA--------------- 163
Query: 253 LNWNLAIEDSDGGTFTISNGGVFGSLLGTPIINPPQSAI--LGMHGTFERPVAIKGQVVV 310
               L+  D  GGTFT+SN G  G     P+I PP+ AI  LG      R    KG+V  
Sbjct: 164 --GQLSTNDLIGGTFTLSNIGSIGGTYAKPVILPPEVAIGALGTIKALPR-FNEKGEVCK 220
Query: 311 KPMMYVALTYDHRLIDG 327
             +M V+ + DHR+IDG
Sbjct: 221 AQIMNVSWSADHRIIDG 237

>pdb|2IHW|A Chain A, Crystal Structure Of A Cubic Core Of The Dihydrolipoamide Acyltransferase (E2b) Component In The Branched-Chain Alpha-Ketoacid Dehydrogenase Complex (Bckdc), Apo Form Length = 262

Iteration: 1
 Score = 49.3 bits (116), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 30/100 (30%), Positives = 57/100 (57%), Gaps = 4/100 (4%)
Query: 334 LQKEAHLEAFQKKYGLKLGFMSPFIKASAYALQDQPVVNAVIEGT--DIVYRDYVDISVA 391
           L++E    AF +  G+KL FM  F+KA++  L   P++NA ++    +I Y+   +I +A
Sbjct: 70  LREELKPIAFAR--GIKLSFMPFFLKAASLGLLQFPILNASVDENCQNITYKASHNIGIA 127
Query: 392 VATPKGLVVPVIRNVEAMNFADIELTIAALGEKARTGKYT 431
           + T +GL+VP ++NV+  +  +I   +  L +    G+ +
Sbjct: 128 MDTEQGLIVPNVKNVQIRSIFEIATELNRLQKLGSAGQLS 167

>pdb|3B8K|A Chain A, Structure Of The Truncated Human Dihydrolipoyl Acetyltransferase (E2) Length = 239

Iteration: 1
 Score = 68.6 bits (166), Expect = 7e-12,   Method: Compositional matrix adjust.
 Identities = 59/222 (26%), Positives = 97/222 (43%), Gaps = 21/222 (9%)
Query: 108 VKMNRMRQRIAQRLKEAQNVNAMLTTFNEIDMSAIIEFRKAHLEAFQKKYGLKLGFMSPF 167
           + ++ +R+ IAQRL +++          +++M  ++  RK   +  + +   K+      
Sbjct: 15  IPISNIRRVIAQRLMQSKQTIPHYYLSIDVNMGEVLLVRKELNKILEGRS--KISVNDFI 72
Query: 168 IKASAYALQDQPVVNAVIEGTDIVYRDYVDISVGMGRNESNLPRWCFNGLLSGVLVLTEH 227
           IKASA A    P  N+    T I     VD+SV +      +    FN  + GV  +   
Sbjct: 73  IKASALACLKVPEANSSWMDTVIRQNHVVDVSVAVSTPAGLITPIVFNAHIKGVETIAND 132
Query: 228 LNGKYCVSSRPSYERHTTGWACYDRLNWNLAIEDSDGGTFTISNGGVFGSLLGTPIINPP 287
           +      +     + H                 +  GGTFTISN G+FG    + IINPP
Sbjct: 133 VVSLATKAREGKLQPH-----------------EFQGGTFTISNLGMFGIKNFSAIINPP 175
Query: 288 QSAILGMHGTFERPVAIKGQ--VVVKPMMYVALTYDHRLIDG 327
           Q+ IL +  + ++ V    +    V  MM V L+ DHR++DG
Sbjct: 176 QACILAIGASEDKLVPADNEKGFDVASMMSVTLSCDHRVVDG 217

>pdb|3B8K|A Chain A, Structure Of The Truncated Human Dihydrolipoyl Acetyltransferase (E2) Length = 239

Iteration: 1
 Score = 48.1 bits (113), Expect = 9e-06,   Method: Compositional matrix adjust.
 Identities = 29/73 (39%), Positives = 37/73 (50%)
Query: 357 FIKASAYALQDQPVVNAVIEGTDIVYRDYVDISVAVATPKGLVVPVIRNVEAMNFADIEL 416
            IKASA A    P  N+    T I     VD+SVAV+TP GL+ P++ N        I  
Sbjct: 72  IIKASALACLKVPEANSSWMDTVIRQNHVVDVSVAVSTPAGLITPIVFNAHIKGVETIAN 131
Query: 417 TIAALGEKARTGK 429
            + +L  KAR GK
Sbjct: 132 DVVSLATKAREGK 144

>pdb|1DPD|A Chain A, Crystallographic And Enzymatic Investigations On The Role Of Ser558, His610 And Asn614 In The Catalytic Mechanism Of Azotobacter Vinelandii Dihydrolipoamide Acetyltransferase (E2p) Length = 243

Iteration: 1
 Score = 68.2 bits (165), Expect = 8e-12,   Method: Compositional matrix adjust.
 Identities = 70/255 (27%), Positives = 116/255 (45%), Gaps = 21/255 (8%)
Query: 90  LPPADPTKEISGTRSEQRVKMNRMRQRIAQRLKEAQNVNAMLTTFNEIDMSAIIEFRKAH 149
           +PP  P  + +     + V M R+ Q  A  L  +      +T F   D++ +  FR A 
Sbjct: 1   IPPIPPV-DFAKYGEIEEVPMTRLMQIGATNLHRSWLNVPHVTQFESADITELEAFRVAQ 59
Query: 150 LEAFQKKYGLKLGFMSPFIKASAYALQDQPVVNAVI--EGTDIVYRDYVDISVGMGRNES 207
            +A  +K G+KL  +   +KA AY L++ P  N+ +   G  ++ + YV I   +     
Sbjct: 60  -KAVAEKAGVKLTVLPLLLKACAYLLKELPDFNSSLAPSGQALIRKKYVHIGFAV----- 113
Query: 208 NLPRWCFNGLLSGVLVLTEHLNGKYCVSSRPSYERHTTGWACYDRLNWNLAIEDSDGGTF 267
           + P    +GLL  V+    +++ K    S           A   R +  L  +   G  F
Sbjct: 114 DTP----DGLLVPVI---RNVDQK----SLLQLAAEAAELAEKAR-SKKLGADAMQGACF 161
Query: 268 TISNGGVFGSLLGTPIINPPQSAILGMHGTFERPVAIKGQVVVKPMMYVALTYDHRLIDG 327
           TI++ G  G    TPI+N P+ AILG+     +PV        + M+ ++L+YDHR+I+G
Sbjct: 162 TIASLGHIGGTAFTPIVNAPEVAILGVSKASMQPVWDGKAFQPRLMLPLSLSYDHRVING 221
Query: 328 REAVLFLQKEAHLEA 342
             A  F ++   L A
Sbjct: 222 AAAARFTKRLGDLLA 236

>pdb|1DPD|A Chain A, Crystallographic And Enzymatic Investigations On The Role Of Ser558, His610 And Asn614 In The Catalytic Mechanism Of Azotobacter Vinelandii Dihydrolipoamide Acetyltransferase (E2p) Length = 243

Iteration: 1
 Score = 54.3 bits (129), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 32/77 (41%), Positives = 46/77 (59%), Gaps = 9/77 (11%)
Query: 340 LEAFQ-------KKYGLKLGFMSPFIKASAYALQDQPVVNAVI--EGTDIVYRDYVDISV 390
           LEAF+       +K G+KL  +   +KA AY L++ P  N+ +   G  ++ + YV I  
Sbjct: 52  LEAFRVAQKAVAEKAGVKLTVLPLLLKACAYLLKELPDFNSSLAPSGQALIRKKYVHIGF 111
Query: 391 AVATPKGLVVPVIRNVE 407
           AV TP GL+VPVIRNV+
Sbjct: 112 AVDTPDGLLVPVIRNVD 128

>pdb|1DPB|A Chain A, Crystallographic And Enzymatic Investigations On The Role Of Ser558, His610 And Asn614 In The Catalytic Mechanism Of Azotobacter Vinelandii Dihydrolipoamide Acetyltransferase (E2p) Length = 243

Iteration: 1
 Score = 65.5 bits (158), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 70/255 (27%), Positives = 115/255 (45%), Gaps = 21/255 (8%)
Query: 90  LPPADPTKEISGTRSEQRVKMNRMRQRIAQRLKEAQNVNAMLTTFNEIDMSAIIEFRKAH 149
           +PP  P  + +     + V M R+ Q  A  L  +      +T F   D++ +  FR A 
Sbjct: 1   IPPIPPV-DFAKYGEIEEVPMTRLMQIGATNLHRSWLNVPHVTQFESADITELEAFRVAQ 59
Query: 150 LEAFQKKYGLKLGFMSPFIKASAYALQDQPVVNAVI--EGTDIVYRDYVDISVGMGRNES 207
            +A  +K G+KL  +   +KA AY L++ P  N+ +   G  ++ + YV I   +     
Sbjct: 60  -KAVAEKAGVKLTVLPLLLKACAYLLKELPDFNSSLAPSGQALIRKKYVHIGFAV----- 113
Query: 208 NLPRWCFNGLLSGVLVLTEHLNGKYCVSSRPSYERHTTGWACYDRLNWNLAIEDSDGGTF 267
           + P    +GLL  V+    +++ K    S           A   R +  L  +   G  F
Sbjct: 114 DTP----DGLLVPVI---RNVDQK----SLLQLAAEAAELAEKAR-SKKLGADAMQGACF 161
Query: 268 TISNGGVFGSLLGTPIINPPQSAILGMHGTFERPVAIKGQVVVKPMMYVALTYDHRLIDG 327
           TIS+ G  G    TPI+N P+ AILG+     +PV        + M+ ++L+YD R+I+G
Sbjct: 162 TISSLGHIGGTAFTPIVNAPEVAILGVSKASMQPVWDGKAFQPRLMLPLSLSYDCRVING 221
Query: 328 REAVLFLQKEAHLEA 342
             A  F ++   L A
Sbjct: 222 AAAARFTKRLGDLLA 236

>pdb|1DPB|A Chain A, Crystallographic And Enzymatic Investigations On The Role Of Ser558, His610 And Asn614 In The Catalytic Mechanism Of Azotobacter Vinelandii Dihydrolipoamide Acetyltransferase (E2p) Length = 243

Iteration: 1
 Score = 54.3 bits (129), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 32/78 (41%), Positives = 46/78 (58%), Gaps = 9/78 (11%)
Query: 339 HLEAFQ-------KKYGLKLGFMSPFIKASAYALQDQPVVNAVI--EGTDIVYRDYVDIS 389
            LEAF+       +K G+KL  +   +KA AY L++ P  N+ +   G  ++ + YV I 
Sbjct: 51  ELEAFRVAQKAVAEKAGVKLTVLPLLLKACAYLLKELPDFNSSLAPSGQALIRKKYVHIG 110
Query: 390 VAVATPKGLVVPVIRNVE 407
            AV TP GL+VPVIRNV+
Sbjct: 111 FAVDTPDGLLVPVIRNVD 128

>pdb|2XT6|A Chain A, Crystal Structure Of Mycobacterium Smegmatis Alpha-Ketoglutarate Decarboxylase Homodimer (Orthorhombic Form) Length = 1113

Iteration: 1
 Score = 43.9 bits (102), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 27/86 (31%), Positives = 43/86 (50%), Gaps = 8/86 (9%)
Query: 257 LAIEDSDGGTFTISNGGVFGSLLGTPIINPPQSAILGMHGTFERPVAIKG-------QVV 309
           L  ED  G T +++N G  G++   P +   Q AI+G  G  E P   +G        + 
Sbjct: 129 LTAEDFSGVTISLTNPGTLGTVHSVPRLMQGQGAIIGA-GAMEYPAEFQGASEERIADLG 187
Query: 310 VKPMMYVALTYDHRLIDGREAVLFLQ 335
           +  ++ +  TYDHR+I G E+  FL+
Sbjct: 188 IGKLITLTSTYDHRIIQGAESGDFLR 213

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	431
1scz_A	233	E2, dihydrolipoamide succinyltransferase; COA-depe	1e-121
1scz_A	233	E2, dihydrolipoamide succinyltransferase; COA-depe	2e-50
3mae_A	256	2-oxoisovalerate dehydrogenase E2 component, dihyd	1e-110
3mae_A	256	2-oxoisovalerate dehydrogenase E2 component, dihyd	3e-44
3rqc_A	224	Probable lipoamide acyltransferase; alpha beta fol	2e-84
3rqc_A	224	Probable lipoamide acyltransferase; alpha beta fol	6e-37
3dva_I	428	Dihydrolipoyllysine-residue acetyltransferase comp	2e-82
3dva_I	428	Dihydrolipoyllysine-residue acetyltransferase comp	4e-34
3l60_A	250	Branched-chain alpha-keto acid dehydrogenase; stru	3e-81
3l60_A	250	Branched-chain alpha-keto acid dehydrogenase; stru	1e-32
1dpb_A	243	Dihydrolipoyl-transacetylase; dihydrolipoamide ace	9e-67
1dpb_A	243	Dihydrolipoyl-transacetylase; dihydrolipoamide ace	4e-30
2ii3_A	262	Lipoamide acyltransferase component of branched-C	2e-62
2ii3_A	262	Lipoamide acyltransferase component of branched-C	2e-29
3b8k_A	239	PDCE2;, dihydrolipoyllysine-residue acetyltransfer	1e-57
3b8k_A	239	PDCE2;, dihydrolipoyllysine-residue acetyltransfer	4e-27
1q23_A	219	Chloramphenicol acetyltransferase; CAT I, trimer,	2e-15
1q23_A	219	Chloramphenicol acetyltransferase; CAT I, trimer,	2e-09
3cla_A	213	Type III chloramphenicol acetyltransferase; transf	5e-12
2i9d_A	217	Chloramphenicol acetyltransferase; structural geno	1e-10
2xt6_A	1113	2-oxoglutarate decarboxylase; lyase, KDH, KGD; HET	2e-04
2xt6_A	1113	2-oxoglutarate decarboxylase; lyase, KDH, KGD; HET	2e-04

>1scz_A E2, dihydrolipoamide succinyltransferase; COA-dependent acyltransferase, CAT-like, alpha and beta (2 L mixed beta-sheeet of 6 strands; 2.20A {Escherichia coli} SCOP: c.43.1.1 PDB: 1e2o_A 1c4t_A Length = 233

 Score =  351 bits (902), Expect = e-121
 Identities = 119/234 (50%), Positives = 158/234 (67%), Gaps = 17/234 (7%)

Query: 103 RSEQRVKMNRMRQRIAQRLKEAQNVNAMLTTFNEIDMSAIIEFRKAHLEAFQKKYGLKLG 162
           RSE+RV M R+R+R+A+RL EA+N  AMLTTFNE++M  I++ RK + EAF+K++G++LG
Sbjct: 2   RSEKRVPMTRLRKRVAERLLEAKNSTAMLTTFNEVNMKPIMDLRKQYGEAFEKRHGIRLG 61

Query: 163 FMSPFIKASAYALQDQPVVNAVIEGTDIVYRDYVDISVGMGRNESNLPRWCFNGLLSGVL 222
           FMS ++KA   AL+  P VNA I+G D+VY +Y D+S+ +       PR    GL++ VL
Sbjct: 62  FMSFYVKAVVEALKRYPEVNASIDGDDVVYHNYFDVSMAVST-----PR----GLVTPVL 112

Query: 223 VLTEHLNGKYCVSSRPSYERHTTGWACYDRLNWNLAIEDSDGGTFTISNGGVFGSLLGTP 282
              + L            E+     A   R    L +ED  GG FTI+NGGVFGSL+ TP
Sbjct: 113 RDVDTL-------GMADIEKKIKELAVKGRDG-KLTVEDLTGGNFTITNGGVFGSLMSTP 164

Query: 283 IINPPQSAILGMHGTFERPVAIKGQVVVKPMMYVALTYDHRLIDGREAVLFLQK 336
           IINPPQSAILGMH   +RP+A+ GQV + PMMY+AL+YDHRLIDGRE+V FL  
Sbjct: 165 IINPPQSAILGMHAIKDRPMAVNGQVEILPMMYLALSYDHRLIDGRESVGFLVT 218

>1scz_A E2, dihydrolipoamide succinyltransferase; COA-dependent acyltransferase, CAT-like, alpha and beta (2 L mixed beta-sheeet of 6 strands; 2.20A {Escherichia coli} SCOP: c.43.1.1 PDB: 1e2o_A 1c4t_A Length = 233

 Score =  169 bits (430), Expect = 2e-50
 Identities = 50/102 (49%), Positives = 74/102 (72%), Gaps = 1/102 (0%)

Query: 330 AVLFLQKEAHLEAFQKKYGLKLGFMSPFIKASAYALQDQPVVNAVIEGTDIVYRDYVDIS 389
            ++ L+K+ + EAF+K++G++LGFMS ++KA   AL+  P VNA I+G D+VY +Y D+S
Sbjct: 40  PIMDLRKQ-YGEAFEKRHGIRLGFMSFYVKAVVEALKRYPEVNASIDGDDVVYHNYFDVS 98

Query: 390 VAVATPKGLVVPVIRNVEAMNFADIELTIAALGEKARTGKYT 431
           +AV+TP+GLV PV+R+V+ +  ADIE  I  L  K R GK T
Sbjct: 99  MAVSTPRGLVTPVLRDVDTLGMADIEKKIKELAVKGRDGKLT 140

>3mae_A 2-oxoisovalerate dehydrogenase E2 component, dihydrolipamide acetyltransferase; 2-oxoacid dehydrogenases acyltransferase; 2.50A {Listeria monocytogenes} Length = 256

 Score =  325 bits (835), Expect = e-110
 Identities = 73/260 (28%), Positives = 126/260 (48%), Gaps = 20/260 (7%)

Query: 88  VKLPPADPTKEISGTRSEQRVKMNRMRQRIAQRLKEAQNVNAMLTTFNEIDMSAIIEFRK 147
           + L  A PT  +     ++ + +N +R+ IA+ +  ++          E+D + ++ +R 
Sbjct: 1   MSLKAAMPTPPVRSAAGDKEIPINGVRKAIAKHMSVSKQEIPHAWMMVEVDATGLVRYRN 60

Query: 148 AHLEAFQKKYGLKLGFMSPFIKASAYALQDQPVVNAVIEGTDIVYRDYVDISVGMGRNES 207
           A  ++F+K+ G  L + + FIKA A AL++ P +N+   G  I+    ++IS+ +     
Sbjct: 61  AVKDSFKKEEGYSLTYFAFFIKAVAQALKEFPQLNSTWAGDKIIEHANINISIAIA---- 116

Query: 208 NLPRWCFNGLLSGVLVLTEHLNGKYCVSSRPSYERHTTGWACYDRLNWNLAIEDSDGGTF 267
                    L   V+   +  + K          R  +  A   R    L+  D +GGTF
Sbjct: 117 -AGD----LLYVPVIKNADEKSIK-------GIAREISELAGKARNG-KLSQADMEGGTF 163

Query: 268 TISNGGVFGSLLGTPIINPPQSAILGMHGTFERPVAIKGQVVVKPMMYVALTYDHRLIDG 327
           T+++ G FGS+    IIN PQ+AIL +    +RPV I   + V+ M+ + L+ DHR++DG
Sbjct: 164 TVNSTGSFGSVQSMGIINHPQAAILQVESIVKRPVIIDDMIAVRDMVNLCLSIDHRILDG 223

Query: 328 REAVLFLQ--KEAHLEAFQK 345
             A  FLQ  K   +E   K
Sbjct: 224 LLAGKFLQAIKAN-VEKISK 242

>3mae_A 2-oxoisovalerate dehydrogenase E2 component, dihydrolipamide acetyltransferase; 2-oxoacid dehydrogenases acyltransferase; 2.50A {Listeria monocytogenes} Length = 256

 Score =  153 bits (390), Expect = 3e-44
 Identities = 33/91 (36%), Positives = 53/91 (58%)

Query: 341 EAFQKKYGLKLGFMSPFIKASAYALQDQPVVNAVIEGTDIVYRDYVDISVAVATPKGLVV 400
           ++F+K+ G  L + + FIKA A AL++ P +N+   G  I+    ++IS+A+A    L V
Sbjct: 64  DSFKKEEGYSLTYFAFFIKAVAQALKEFPQLNSTWAGDKIIEHANINISIAIAAGDLLYV 123

Query: 401 PVIRNVEAMNFADIELTIAALGEKARTGKYT 431
           PVI+N +  +   I   I+ L  KAR GK +
Sbjct: 124 PVIKNADEKSIKGIAREISELAGKARNGKLS 154

>3rqc_A Probable lipoamide acyltransferase; alpha beta fold; 4.01A {Thermoplasma acidophilum dsm 1728} Length = 224

 Score =  257 bits (658), Expect = 2e-84
 Identities = 57/236 (24%), Positives = 102/236 (43%), Gaps = 32/236 (13%)

Query: 101 GTRSEQRVKMNRMRQRIAQRLKEAQNVNAMLTTFNEIDMSAIIEFRKAHLEAFQKKYGLK 160
               E+ ++M+ +R+ I  ++ +A+ +    T   E+D+++++    +      K    K
Sbjct: 2   APGREEILEMHGLRRIIFDKMTKAKQIMPHFTVMEEVDVTSMVSILDSA-----KARNRK 56

Query: 161 LGFMSPFIKASAYALQDQPVVNAVIEGTD--IVYRDYVDISVGMGRNESNLPRWCFNGLL 218
           +       +     L+  P +NA+ + T    + + Y +I + +            +GL 
Sbjct: 57  VTVTGFLARIVPSILKQYPYLNAIYDETRRVYILKKYYNIGIAVDTP---------DGLN 107

Query: 219 SGVLVLTEHLNGKYCVSSRPSYERHTTGWACYDRLNWNLAIEDSDGGTFTISNGGVFGSL 278
             V+   +         S        +  A   R N  L +++    TFTI+N G  G +
Sbjct: 108 VFVIKDADRK-------SMVEISAEISDKASRAREN-KLQLDEVQDSTFTITNVGTIGGI 159

Query: 279 LGTPIINPPQSAILGMHGTFERPVAIKGQVVVKPMMYVALTYDHRLIDGREAVLFL 334
           + TPIIN P+ AILG+H   ER             MY++L+ DHRLIDG  A  F+
Sbjct: 160 MSTPIINYPEVAILGVHRILEREGR--------KYMYLSLSCDHRLIDGAVATRFI 207

>3rqc_A Probable lipoamide acyltransferase; alpha beta fold; 4.01A {Thermoplasma acidophilum dsm 1728} Length = 224

 Score =  133 bits (337), Expect = 6e-37
 Identities = 23/90 (25%), Positives = 40/90 (44%), Gaps = 2/90 (2%)

Query: 344 QKKYGLKLGFMSPFIKASAYALQDQPVVNAVIEGTD--IVYRDYVDISVAVATPKGLVVP 401
            K    K+       +     L+  P +NA+ + T    + + Y +I +AV TP GL V 
Sbjct: 50  AKARNRKVTVTGFLARIVPSILKQYPYLNAIYDETRRVYILKKYYNIGIAVDTPDGLNVF 109

Query: 402 VIRNVEAMNFADIELTIAALGEKARTGKYT 431
           VI++ +  +  +I   I+    +AR  K  
Sbjct: 110 VIKDADRKSMVEISAEISDKASRARENKLQ 139

>3dva_I Dihydrolipoyllysine-residue acetyltransferase component of pyruvate dehydrogenase...; oxidoreductase, multienzyme complex; HET: TPW; 2.35A {Bacillus stearothermophilus} PDB: 3dv0_I* 3duf_I* 1b5s_A 1lab_A 1lac_A 1w3d_A Length = 428

 Score =  259 bits (663), Expect = 2e-82
 Identities = 73/275 (26%), Positives = 121/275 (44%), Gaps = 54/275 (19%)

Query: 80  SSAIEAATVKLPPADPTKEISGTRSEQRVKMNRMRQRIAQRLKEAQNVNAMLTTFNEIDM 139
            +   A     P A       G   E R KM+ +R+ IA+ +  +++    +T  +E D+
Sbjct: 173 PAPAAAEEKAAPAAAKPATTEGEFPETREKMSGIRRAIAKAMVHSKHTAPHVTLMDEADV 232

Query: 140 SAIIEFRKAHLEAFQKKYGLKLGFMSPFIKASAYALQDQPVVNAVI--EGTDIVYRDYVD 197
           + ++  RK       +K G+KL F+   +KA   AL++ PV+N  I  E  +I+ + Y +
Sbjct: 233 TKLVAHRKKFKAIAAEK-GIKLTFLPYVVKALVSALREYPVLNTSIDDETEEIIQKHYYN 291

Query: 198 ISVGMGRNESNLPRWCFNGLLSGVLVLTEHLNGKYCVSSRPSYERHTTGWACYDRLN-WN 256
           I +    +          GLL  V+                   +H       DR   + 
Sbjct: 292 IGIAADTD---------RGLLVPVI-------------------KHA------DRKPIFA 317

Query: 257 LAIEDSD----------------GGTFTISNGGVFGSLLGTPIINPPQSAILGMHGTFER 300
           LA E ++                G + TI+N G  G    TP+IN P+ AILG+    E+
Sbjct: 318 LAQEINELAEKARDGKLTPGEMKGASCTITNIGSAGGQWFTPVINHPEVAILGIGRIAEK 377

Query: 301 PVAIKGQVVVKPMMYVALTYDHRLIDGREAVLFLQ 335
           P+   G++V  PM+ ++L++DHR+IDG  A   L 
Sbjct: 378 PIVRDGEIVAAPMLALSLSFDHRMIDGATAQKALN 412

>3dva_I Dihydrolipoyllysine-residue acetyltransferase component of pyruvate dehydrogenase...; oxidoreductase, multienzyme complex; HET: TPW; 2.35A {Bacillus stearothermophilus} PDB: 3dv0_I* 3duf_I* 1b5s_A 1lab_A 1lac_A 1w3d_A Length = 428

 Score =  131 bits (331), Expect = 4e-34
 Identities = 33/94 (35%), Positives = 52/94 (55%), Gaps = 2/94 (2%)

Query: 338 AHLEAFQKKYGLKLGFMSPFIKASAYALQDQPVVNAVI--EGTDIVYRDYVDISVAVATP 395
              +A   + G+KL F+   +KA   AL++ PV+N  I  E  +I+ + Y +I +A  T 
Sbjct: 240 KKFKAIAAEKGIKLTFLPYVVKALVSALREYPVLNTSIDDETEEIIQKHYYNIGIAADTD 299

Query: 396 KGLVVPVIRNVEAMNFADIELTIAALGEKARTGK 429
           +GL+VPVI++ +      +   I  L EKAR GK
Sbjct: 300 RGLLVPVIKHADRKPIFALAQEINELAEKARDGK 333

>3l60_A Branched-chain alpha-keto acid dehydrogenase; structural genomics, PSI-2, protein structure initiative; 2.00A {Mycobacterium tuberculosis} Length = 250

 Score =  249 bits (638), Expect = 3e-81
 Identities = 49/248 (19%), Positives = 92/248 (37%), Gaps = 26/248 (10%)

Query: 93  ADPTKEISGTRSEQRVKMNRMRQRIAQRLKEAQNVNAMLTTFNEIDMSAIIEFRKAHLEA 152
           +                ++ +  R+A+++  +           E+  + ++  R      
Sbjct: 2   SLAAARGGVGAGPDVRPVHGVHARMAEKMTLSHKEIPTAKASVEVICAELLRLRDRF--- 58

Query: 153 FQKKYGLKLGFMSPFIKASAYALQDQPVVNAVI----EGTDIVYRDYVDISVGMGRNESN 208
                  ++   +  ++    AL+   ++N+      EG  +     V +  G       
Sbjct: 59  --VSAAPEITPFALTLRLLVIALKHNVILNSTWVDSGEGPQVHVHRGVHLGFGAA----- 111

Query: 209 LPRWCFNGLLSGVLVLTEHLNGKYCVSSRPSYERHTTGWACYDRLNWNLAIEDSDGGTFT 268
             R    GLL  V+   +         +               R    L   +  G TFT
Sbjct: 112 TER----GLLVPVVTDAQDK-------NTRELASRVAELITGAREG-TLTPAELRGSTFT 159

Query: 269 ISNGGVFGSLLGTPIINPPQSAILGMHGTFERPVAIKGQVVVKPMMYVALTYDHRLIDGR 328
           +SN G  G   G P+IN P++AILG+     RPV + G+VV +P M +   +DHR++DG 
Sbjct: 160 VSNFGALGVDDGVPVINHPEAAILGLGAIKPRPVVVGGEVVARPTMTLTCVFDHRVVDGA 219

Query: 329 EAVLFLQK 336
           +   F+ +
Sbjct: 220 QVAQFMCE 227

>3l60_A Branched-chain alpha-keto acid dehydrogenase; structural genomics, PSI-2, protein structure initiative; 2.00A {Mycobacterium tuberculosis} Length = 250

 Score =  122 bits (309), Expect = 1e-32
 Identities = 20/91 (21%), Positives = 39/91 (42%), Gaps = 4/91 (4%)

Query: 345 KKYGLKLGFMSPFIKASAYALQDQPVVNAVI----EGTDIVYRDYVDISVAVATPKGLVV 400
                ++   +  ++    AL+   ++N+      EG  +     V +    AT +GL+V
Sbjct: 59  VSAAPEITPFALTLRLLVIALKHNVILNSTWVDSGEGPQVHVHRGVHLGFGAATERGLLV 118

Query: 401 PVIRNVEAMNFADIELTIAALGEKARTGKYT 431
           PV+ + +  N  ++   +A L   AR G  T
Sbjct: 119 PVVTDAQDKNTRELASRVAELITGAREGTLT 149

>1dpb_A Dihydrolipoyl-transacetylase; dihydrolipoamide acetyltransferase; 2.50A {Azotobacter vinelandii} SCOP: c.43.1.1 PDB: 1dpd_A 1eaa_A 1eab_A* 1eac_A* 1ead_A* 1eae_A* 1eaf_A 1dpc_A Length = 243

 Score =  212 bits (541), Expect = 9e-67
 Identities = 63/249 (25%), Positives = 106/249 (42%), Gaps = 21/249 (8%)

Query: 90  LPPADPTKEISGTRSEQRVKMNRMRQRIAQRLKEAQNVNAMLTTFNEIDMSAIIEFRKAH 149
           +PP  P  + +     + V M R+ Q  A  L  +      +T F   D++ +  FR A 
Sbjct: 1   IPPI-PPVDFAKYGEIEEVPMTRLMQIGATNLHRSWLNVPHVTQFESADITELEAFRVAQ 59

Query: 150 LEAFQKKYGLKLGFMSPFIKASAYALQDQPVVNAVI--EGTDIVYRDYVDISVGMGRNES 207
               +K  G+KL  +   +KA AY L++ P  N+ +   G  ++ + YV I   +     
Sbjct: 60  KAVAEKA-GVKLTVLPLLLKACAYLLKELPDFNSSLAPSGQALIRKKYVHIGFAVDTP-- 116

Query: 208 NLPRWCFNGLLSGVLVLTEHLNGKYCVSSRPSYERHTTGWACYDRLNWNLAIEDSDGGTF 267
                  +GLL  V+   +  +         + E          +    L  +   G  F
Sbjct: 117 -------DGLLVPVIRNVDQKSLLQL-----AAEAAELAEKARSK---KLGADAMQGACF 161

Query: 268 TISNGGVFGSLLGTPIINPPQSAILGMHGTFERPVAIKGQVVVKPMMYVALTYDHRLIDG 327
           TIS+ G  G    TPI+N P+ AILG+     +PV        + M+ ++L+YD R+I+G
Sbjct: 162 TISSLGHIGGTAFTPIVNAPEVAILGVSKASMQPVWDGKAFQPRLMLPLSLSYDCRVING 221

Query: 328 REAVLFLQK 336
             A  F ++
Sbjct: 222 AAAARFTKR 230

>1dpb_A Dihydrolipoyl-transacetylase; dihydrolipoamide acetyltransferase; 2.50A {Azotobacter vinelandii} SCOP: c.43.1.1 PDB: 1dpd_A 1eaa_A 1eab_A* 1eac_A* 1ead_A* 1eae_A* 1eaf_A 1dpc_A Length = 243

 Score =  115 bits (291), Expect = 4e-30
 Identities = 38/99 (38%), Positives = 54/99 (54%), Gaps = 9/99 (9%)

Query: 340 LEAFQKKY-------GLKLGFMSPFIKASAYALQDQPVVNAVI--EGTDIVYRDYVDISV 390
           LEAF+          G+KL  +   +KA AY L++ P  N+ +   G  ++ + YV I  
Sbjct: 52  LEAFRVAQKAVAEKAGVKLTVLPLLLKACAYLLKELPDFNSSLAPSGQALIRKKYVHIGF 111

Query: 391 AVATPKGLVVPVIRNVEAMNFADIELTIAALGEKARTGK 429
           AV TP GL+VPVIRNV+  +   +    A L EKAR+ K
Sbjct: 112 AVDTPDGLLVPVIRNVDQKSLLQLAAEAAELAEKARSKK 150

>2ii3_A Lipoamide acyltransferase component of branched-C alpha-keto acid dehydrogenase complex...; cubic core, HOMO trimer, oxidized COA-bound form; HET: CAO; 2.17A {Bos taurus} PDB: 2ihw_A* 2ii4_A* 2ii5_A* Length = 262

 Score =  202 bits (515), Expect = 2e-62
 Identities = 57/277 (20%), Positives = 102/277 (36%), Gaps = 56/277 (20%)

Query: 80  SSAIEAATVKLPPADPTKEISGTRSEQRVKMNRMRQRIAQRLKEAQNVNAMLTTFNEIDM 139
                    +  P   +K       ++   +    + + + +  A  +       +E+D+
Sbjct: 6   MPPPPKPKDRTIPIPISKPPVFIGKDRTEPVKGFHKAMVKTMSAALKI-PHFGYCDEVDL 64

Query: 140 SAIIEFRKAHLEAFQKKYGLKLGFMSPFIKASAYALQDQPVVNAVI--EGTDIVYRDYVD 197
           + +++ R+        + G+KL FM  F+KA++  L   P++NA +     +I Y+   +
Sbjct: 65  TELVKLREELKPIAFAR-GIKLSFMPFFLKAASLGLLQFPILNASVDENCQNITYKASHN 123

Query: 198 ISVGMGRNESNLPRWCFNGLL---------SGVLVLTEHLN--------GKYCVSSRPSY 240
           I + M     +       GL+           +  +   LN        G+         
Sbjct: 124 IGIAM-----DTE----QGLIVPNVKNVQIRSIFEIATELNRLQKLGSAGQ--------- 165

Query: 241 ERHTTGWACYDRLNWNLAIEDSDGGTFTISNGGVFGSLLGTPIINPPQSAILGMHGTFER 300
                           L+  D  GGTFT+SN G  G     P+I PP+ AI  +      
Sbjct: 166 ----------------LSTNDLIGGTFTLSNIGSIGGTYAKPVILPPEVAIGALGTIKAL 209

Query: 301 PV-AIKGQVVVKPMMYVALTYDHRLIDGREAVLFLQK 336
           P    KG+V    +M V+ + DHR+IDG     F   
Sbjct: 210 PRFNEKGEVCKAQIMNVSWSADHRIIDGATVSRFSNL 246

>2ii3_A Lipoamide acyltransferase component of branched-C alpha-keto acid dehydrogenase complex...; cubic core, HOMO trimer, oxidized COA-bound form; HET: CAO; 2.17A {Bos taurus} PDB: 2ihw_A* 2ii4_A* 2ii5_A* Length = 262

 Score =  114 bits (288), Expect = 2e-29
 Identities = 27/99 (27%), Positives = 52/99 (52%), Gaps = 9/99 (9%)

Query: 340 LEAFQKKY-------GLKLGFMSPFIKASAYALQDQPVVNAVI--EGTDIVYRDYVDISV 390
           L   +++        G+KL FM  F+KA++  L   P++NA +     +I Y+   +I +
Sbjct: 67  LVKLREELKPIAFARGIKLSFMPFFLKAASLGLLQFPILNASVDENCQNITYKASHNIGI 126

Query: 391 AVATPKGLVVPVIRNVEAMNFADIELTIAALGEKARTGK 429
           A+ T +GL+VP ++NV+  +  +I   +  L +    G+
Sbjct: 127 AMDTEQGLIVPNVKNVQIRSIFEIATELNRLQKLGSAGQ 165

>3b8k_A PDCE2;, dihydrolipoyllysine-residue acetyltransferase; central beta-sheet surrounded by five alpha-helices; 8.80A {Homo sapiens} Length = 239

 Score =  188 bits (479), Expect = 1e-57
 Identities = 63/243 (25%), Positives = 101/243 (41%), Gaps = 21/243 (8%)

Query: 95  PTKEISGTRSEQRVKMNRMRQRIAQRLKEAQNVNAMLTTFNEIDMSAIIEFRKAHLEAFQ 154
           P      T     + ++ +R+ IAQRL +++          +++M  ++  RK   +  +
Sbjct: 2   PGMAPVPTGVFTDIPISNIRRVIAQRLMQSKQTIPHYYLSIDVNMGEVLLVRKELNKILE 61

Query: 155 KKYGLKLGFMSPFIKASAYALQDQPVVNAVIEGTDIVYRDYVDISVGMGRNESNLPRWCF 214
            +   K+      IKASA A    P  N+    T I     VD+SV +       P    
Sbjct: 62  GRS--KISVNDFIIKASALACLKVPEANSSWMDTVIRQNHVVDVSVAVS-----TP---- 110

Query: 215 NGLLSGVLVLTEHLNGKYCVSSRPSYERHTTGWACYDRLNWNLAIEDSDGGTFTISNGGV 274
            GL++ ++                +        A   R    L   +  GGTFTISN G+
Sbjct: 111 AGLITPIVFNAHIK-------GVETIANDVVSLATKAREG-KLQPHEFQGGTFTISNLGM 162

Query: 275 FGSLLGTPIINPPQSAILGMHGTFERPVAIKGQ--VVVKPMMYVALTYDHRLIDGREAVL 332
           FG    + IINPPQ+ IL +  + ++ V    +    V  MM V L+ DHR++DG     
Sbjct: 163 FGIKNFSAIINPPQACILAIGASEDKLVPADNEKGFDVASMMSVTLSCDHRVVDGAVGAQ 222

Query: 333 FLQ 335
           +L 
Sbjct: 223 WLA 225

>3b8k_A PDCE2;, dihydrolipoyllysine-residue acetyltransferase; central beta-sheet surrounded by five alpha-helices; 8.80A {Homo sapiens} Length = 239

 Score =  107 bits (269), Expect = 4e-27
 Identities = 30/82 (36%), Positives = 39/82 (47%)

Query: 348 GLKLGFMSPFIKASAYALQDQPVVNAVIEGTDIVYRDYVDISVAVATPKGLVVPVIRNVE 407
             K+      IKASA A    P  N+    T I     VD+SVAV+TP GL+ P++ N  
Sbjct: 63  RSKISVNDFIIKASALACLKVPEANSSWMDTVIRQNHVVDVSVAVSTPAGLITPIVFNAH 122

Query: 408 AMNFADIELTIAALGEKARTGK 429
                 I   + +L  KAR GK
Sbjct: 123 IKGVETIANDVVSLATKAREGK 144

>1q23_A Chloramphenicol acetyltransferase; CAT I, trimer, fusidic acid; HET: FUA; 2.18A {Escherichia coli} SCOP: c.43.1.1 PDB: 1noc_B 1pd5_A* 3u9b_A 3u9f_A* Length = 219

 Score = 74.0 bits (181), Expect = 2e-15
 Identities = 29/217 (13%), Positives = 60/217 (27%), Gaps = 38/217 (17%)

Query: 132 TTFNEIDMSAIIEFRKAHLEAFQKKYGLKLGFMSPFIKASAYALQDQPVVNAVIEGTDIV 191
               ++D++A ++  K +          K  F   FI   A  +   P     ++  ++V
Sbjct: 34  NQTVQLDITAFLKTVKKN----------KHKFYPAFIHILARLMNAHPEFRMAMKDGELV 83

Query: 192 YRDYVDISVGMGRNESNLPRWCFNGLLSGVLVLTEHLNGKYCVSSRPSYERHTTGWACYD 251
             D V     +   ++      F+ L S            Y        E          
Sbjct: 84  IWDSVHPCYTVFHEQTET----FSSLWSEYHDDFRQFLHIYSQDVACYGENLA------- 132

Query: 252 RLNWNLAIEDSDGGTFTISNGGVFGSLLGTPIINPPQSAILGMHGTFERPVAIKGQVVVK 311
                   +      F +S             +    +           PV   G+   +
Sbjct: 133 -----YFPKGFIENMFFVSANPWVSFTSFDLNVANMDNFFA--------PVFTMGKYYTQ 179

Query: 312 P---MMYVALTYDHRLIDGREAVLFLQK-EAHLEAFQ 344
               +M +A+   H + DG      L + + + + +Q
Sbjct: 180 GDKVLMPLAIQVHHAVCDGFHVGRMLNELQQYCDEWQ 216

>1q23_A Chloramphenicol acetyltransferase; CAT I, trimer, fusidic acid; HET: FUA; 2.18A {Escherichia coli} SCOP: c.43.1.1 PDB: 1noc_B 1pd5_A* 3u9b_A 3u9f_A* Length = 219

 Score = 56.6 bits (136), Expect = 2e-09
 Identities = 11/89 (12%), Positives = 22/89 (24%)

Query: 341 EAFQKKYGLKLGFMSPFIKASAYALQDQPVVNAVIEGTDIVYRDYVDISVAVATPKGLVV 400
              +     K  F   FI   A  +   P     ++  ++V  D V     V   +    
Sbjct: 43  AFLKTVKKNKHKFYPAFIHILARLMNAHPEFRMAMKDGELVIWDSVHPCYTVFHEQTETF 102

Query: 401 PVIRNVEAMNFADIELTIAALGEKARTGK 429
             + +    +F       +          
Sbjct: 103 SSLWSEYHDDFRQFLHIYSQDVACYGENL 131

>3cla_A Type III chloramphenicol acetyltransferase; transferase (acyltransferase); HET: CLM; 1.75A {Escherichia coli} SCOP: c.43.1.1 PDB: 1cla_A* 2cla_A 4cla_A* 1cia_A 1qca_A* Length = 213

 Score = 63.9 bits (155), Expect = 5e-12
 Identities = 21/220 (9%), Positives = 53/220 (24%), Gaps = 37/220 (16%)

Query: 130 MLTTFNEIDMSAIIEFRKAHLEAFQKKYGLKLGFMSPFIKASAYALQDQPVVNAVIEGTD 189
             +  ++ID++ + +                  F    I   A A+     +   I+  +
Sbjct: 27  GFSLTSKIDITTLKKSLDDS----------AYKFYPVMIYLIAQAVNQFDELRMAIKDDE 76

Query: 190 IVYRDYVDISVGMGRNESNLPRWCFNGLLSGVLVLTEHLNGKYCVSSRPSYERHTTGWAC 249
           ++  D VD    +   E+           S +    +     Y                 
Sbjct: 77  LIVWDSVDPQFTVFHQETETFSALSCPYSSDI----DQFMVNYLSVMERYKSDTKL---- 128

Query: 250 YDRLNWNLAIEDSDGGTFTISNGGVFGSLLGTPIINPPQSAILGMHGTFERPVAIKGQVV 309
                       +      IS             +                P+    +  
Sbjct: 129 -------FPQGVTPENHLNISALPWVNFDSFNLNVANFTDYFA--------PIITMAKYQ 173

Query: 310 VKP---MMYVALTYDHRLIDGREAVLFLQK-EAHLEAFQK 345
            +    ++ +++   H + DG     F+ + +    +  K
Sbjct: 174 QEGDRLLLPLSVQVHHAVCDGFHVARFINRLQELCNSKLK 213

>2i9d_A Chloramphenicol acetyltransferase; structural genomics, PSI- protein structure initiative, midwest center for structural genomics; 2.30A {Bacteroides thetaiotaomicron} Length = 217

 Score = 60.1 bits (145), Expect = 1e-10
 Identities = 33/216 (15%), Positives = 62/216 (28%), Gaps = 32/216 (14%)

Query: 125 QNVNAMLTTFNEIDMSAIIEFRKAHLEAFQKKYGLKLGFMSPFIKASAYALQDQPVVNAV 184
              N  L+  +E++     +  KA              F   ++ A   A  + P     
Sbjct: 24  HFQNPQLSITSEVECGGARQRAKAA----------GQSFFLHYLYAVLRAANEIPEFRYR 73

Query: 185 IEGTD-IVYRDYVDISVGMGRNESNLPRWCFNGLLSGVLVLTEHLNGKYCVSSRPSYERH 243
           I+    +V  D +D+   +   E+                     +  +   +R   +  
Sbjct: 74  IDPDGRVVLYDTIDMLSPIKIKENGKFFTT-------RFPYHNDFD-TFYQEARLIIDAI 125

Query: 244 TTGWACYDRLNWNLAIEDSDGGTFTISNGGVFGSLLGTPIINPPQSAILGMHGTFERPVA 303
                       N  + D D G   +S          T                   P+ 
Sbjct: 126 PE--DGDPYAAENEEVADGDYGLILLSATPDLYFTSITGTQEKRSG--------NNYPLL 175

Query: 304 IKGQVVV---KPMMYVALTYDHRLIDGREAVLFLQK 336
             G+ ++   + +M +A+T  H  IDG    LF +K
Sbjct: 176 NAGKAIIREGRLVMPIAMTIHHGFIDGHHLSLFYKK 211

>2xt6_A 2-oxoglutarate decarboxylase; lyase, KDH, KGD; HET: TPP; 2.74A {Mycobacterium smegmatis} Length = 1113

 Score = 43.0 bits (102), Expect = 2e-04
 Identities = 19/77 (24%), Positives = 33/77 (42%), Gaps = 9/77 (11%)

Query: 364 ALQDQPVVN---AVIEGT-DIVYRDYVDISVAVATPKG-----LVVPVIRNVEAMNFADI 414
           A++  P +N   AV++G    +   + ++ +A+          LVV  I+  E M F   
Sbjct: 54  AVKKFPNMNRHFAVVDGKPTAITPAHTNLGLAIDLQGKDGNRSLVVAAIKRCETMRFGQF 113

Query: 415 ELTIAALGEKARTGKYT 431
                 +  +AR GK T
Sbjct: 114 IAAYEDIVRRARDGKLT 130

>2xt6_A 2-oxoglutarate decarboxylase; lyase, KDH, KGD; HET: TPP; 2.74A {Mycobacterium smegmatis} Length = 1113

 Score = 42.6 bits (101), Expect = 2e-04
 Identities = 29/101 (28%), Positives = 48/101 (47%), Gaps = 13/101 (12%)

Query: 247 WACYDRL-----NWNLAIEDSDGGTFTISNGGVFGSLLGTPIINPPQSAILGMHGTFERP 301
            A Y+ +     +  L  ED  G T +++N G  G++   P +   Q AI+G  G  E P
Sbjct: 114 IAAYEDIVRRARDGKLTAEDFSGVTISLTNPGTLGTVHSVPRLMQGQGAIIGA-GAMEYP 172

Query: 302 VAIKG-------QVVVKPMMYVALTYDHRLIDGREAVLFLQ 335
              +G        + +  ++ +  TYDHR+I G E+  FL+
Sbjct: 173 AEFQGASEERIADLGIGKLITLTSTYDHRIIQGAESGDFLR 213

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	431
3dva_I	428	Dihydrolipoyllysine-residue acetyltransferase comp	100.0
3mae_A	256	2-oxoisovalerate dehydrogenase E2 component, dihyd	100.0
1scz_A	233	E2, dihydrolipoamide succinyltransferase; COA-depe	100.0
3l60_A	250	Branched-chain alpha-keto acid dehydrogenase; stru	100.0
1dpb_A	243	Dihydrolipoyl-transacetylase; dihydrolipoamide ace	100.0
2ii3_A	262	Lipoamide acyltransferase component of branched-C	100.0
3b8k_A	239	PDCE2;, dihydrolipoyllysine-residue acetyltransfer	100.0
3rqc_A	224	Probable lipoamide acyltransferase; alpha beta fol	100.0
2xt6_A	1113	2-oxoglutarate decarboxylase; lyase, KDH, KGD; HET	100.0
1q23_A	219	Chloramphenicol acetyltransferase; CAT I, trimer,	100.0
3cla_A	213	Type III chloramphenicol acetyltransferase; transf	100.0
2i9d_A	217	Chloramphenicol acetyltransferase; structural geno	100.0
3mae_A	256	2-oxoisovalerate dehydrogenase E2 component, dihyd	99.88
1scz_A	233	E2, dihydrolipoamide succinyltransferase; COA-depe	99.87
3l60_A	250	Branched-chain alpha-keto acid dehydrogenase; stru	99.86
3rqc_A	224	Probable lipoamide acyltransferase; alpha beta fol	99.86
1dpb_A	243	Dihydrolipoyl-transacetylase; dihydrolipoamide ace	99.85
2ii3_A	262	Lipoamide acyltransferase component of branched-C	99.85
3b8k_A	239	PDCE2;, dihydrolipoyllysine-residue acetyltransfer	99.83
3cla_A	213	Type III chloramphenicol acetyltransferase; transf	99.77
3dva_I	428	Dihydrolipoyllysine-residue acetyltransferase comp	99.76
1q23_A	219	Chloramphenicol acetyltransferase; CAT I, trimer,	99.76
2xt6_A	1113	2-oxoglutarate decarboxylase; lyase, KDH, KGD; HET	99.72
2i9d_A	217	Chloramphenicol acetyltransferase; structural geno	99.71
1zy8_K	229	Pyruvate dehydrogenase protein X component, mitoch	97.31
1bal_A	51	Dihydrolipoamide succinyltransferase; glycolysis;	92.57
2eq7_C	40	2-oxoglutarate dehydrogenase E2 component; protein	89.78
3rnm_E	58	Lipoamide acyltransferase component of branched-C	89.61
2eq8_C	40	Pyruvate dehydrogenase complex, dihydrolipoamide a	89.55
2eq9_C	41	Pyruvate dehydrogenase complex, dihydrolipoamide a	89.28
1w85_I	49	Dihydrolipoyllysine-residue acetyltransferase comp	86.31
2k7v_A	85	Dihydrolipoyllysine-residue acetyltransferase comp	85.84
1dcz_A	77	Transcarboxylase 1.3S subunit; antiparallel beta s	84.41
2dnc_A	98	Pyruvate dehydrogenase protein X component; lipoic	83.61
2d5d_A	74	Methylmalonyl-COA decarboxylase gamma chain; bioti	83.57
1qjo_A	80	Dihydrolipoamide acetyltransferase; lipoyl domain,	83.27
1qjo_A	80	Dihydrolipoamide acetyltransferase; lipoyl domain,	82.88
1z6h_A	72	Biotin/lipoyl attachment protein; solution structu	82.66
1k8m_A	93	E2 component of branched-chain ahpha-ketoacid dehy	82.5
2k32_A	116	A; NMR {Campylobacter jejuni} PDB: 2k33_A*	81.04
2coo_A	70	Lipoamide acyltransferase component of branched- c	80.75
1iyu_A	79	E2P, dihydrolipoamide acetyltransferase component	80.67

>3dva_I Dihydrolipoyllysine-residue acetyltransferase component of pyruvate dehydrogenase...; oxidoreductase, multienzyme complex; HET: TPW; 2.35A {Bacillus stearothermophilus} PDB: 3dv0_I* 3duf_I* 1b5s_A 1lab_A 1lac_A 1w3d_A

Probab=100.00  E-value=2.7e-66  Score=534.83  Aligned_cols=317  Identities=24%  Similarity=0.362  Sum_probs=24.1

Q ss_pred             ccceeeeeecCCCCeEecCceeEEEecCCCCCCCCC-----CC---CCCCCCCCCC----CCCC----CC--CCCCCCCC
Q psy14345         10 NKKFLLLASLEDGATVKAGQQLFKIKPTATSVVDWW-----SS---PEEGSSAQSR----GYSS----SS--SSSLCCCS   71 (431)
Q Consensus        10 ~~~~~l~~~~~eGd~v~VG~~L~~Ie~~~~~~a~~~-----~~---~~~~~~~~~~----~~~~----~~--~~~~~~~~   71 (431)
                      .+-.+..+.+++||+|++|++|+.|+.++++.+...     ++   +.+.+.+...    ..+.    ..  ....+..+
T Consensus        52 ~~G~v~~i~v~~G~~V~~G~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a  131 (428)
T 3dva_I           52 VKGKVLEILVPEGTVATVGQTLITLDAPGYENMTFKGQEQEEAKKEEKTETVSKEEKVDAVAPNAPAAEAEAGPNRRVIA  131 (428)
T ss_dssp             ----------------------------------------------------------------------------CCCC
T ss_pred             CCeEEEEEEeCCCCEeCCCCEEEEEecCCccccccccccccccccCCCcccCCccccccCCCcccccccccccccccccc
Confidence            344566789999999999999999996554321100     00   0000000000    0000    00  00112345


Q ss_pred             CCCC-chhhhcCCCccccCCCC-------CCCCccccC-------------------------CCCceEEeccHHHHHHH
Q psy14345         72 SPSP-SLCYSSAIEAATVKLPP-------ADPTKEISG-------------------------TRSEQRVKMNRMRQRIA  118 (431)
Q Consensus        72 sp~~-~lA~e~gIdl~~v~gtg-------~dv~~~~a~-------------------------~~~~~~vpls~~Rk~ia  118 (431)
                      +|.+ +||+|+||||+.|+|||       +|+......                         ...++++||++|||.||
T Consensus       132 sP~~R~lA~e~gvdl~~v~gtG~~GrI~k~DV~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~s~~Rk~ia  211 (428)
T 3dva_I          132 MPSVRKYAREKGVDIRLVQGTGKNGRVLKEDIDAFLAGGAKPAPAAAEEKAAPAAAKPATTEGEFPETREKMSGIRRAIA  211 (428)
T ss_dssp             CHHHHHHHHHTTCCGGGSCCCSTTSCCCTTTTTTTSCC------------------------------------------
T ss_pred             CHHHHHHHHHcCCCHHHCCCCCCCCceeHHHHHHHhhccccccccccccccccCCCCccccccCCccccccCcHHHHHHH
Confidence            6666 99999999999999999       565442110                         01256899999999999


Q ss_pred             HHHHHhcccceEEEEeeeccchHHHHHHHHHHHHHHhhcCCCCChhHHHHHHHHHHHhhCCccceeeeC--CeeEecCcc
Q psy14345        119 QRLKEAQNVNAMLTTFNEIDMSAIIEFRKAHLEAFQKKYGLKLGFMSPFIKASAYALQDQPVVNAVIEG--TDIVYRDYV  196 (431)
Q Consensus       119 ~~m~~S~~~iP~~t~~~evD~t~l~~~r~~l~~~~~~~~g~k~t~~~~~ikA~a~Al~~~P~~N~~~~~--~~i~~~~~v  196 (431)
                      ++|++||+++||||++.+||+|+|+++|+++|+.+. +.|.|+||++||+||+++||++||+||++|++  ++|++++++
T Consensus       212 ~~m~~S~~~~P~~~~~~evDvt~l~~~rk~~~~~~~-~~g~kls~~~~~ikAva~Al~~~P~~Na~~~~~~~~i~~~~~v  290 (428)
T 3dva_I          212 KAMVHSKHTAPHVTLMDEADVTKLVAHRKKFKAIAA-EKGIKLTFLPYVVKALVSALREYPVLNTSIDDETEEIIQKHYY  290 (428)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             HHHHHhcccCCeEEEEEEEeHHHHHHHHHHhhhhHh-hcCCCcCHHHHHHHHHHHHHHhCHHhhheEecCCCeEEEcCcc
Confidence            999999999999999999999999999999987543 45899999999999999999999999999987  899999999


Q ss_pred             cEEEEEeecCCCCCCccCCcEEEEeecCCCccccccccCChhHHHHHHHHHHhhhhhcCCCCcccCCCceEEEecCCCCC
Q psy14345        197 DISVGMGRNESNLPRWCFNGLLSGVLVLTEHLNGKYCVSSRPSYERHTTGWACYDRLNWNLAIEDSDGGTFTISNGGVFG  276 (431)
Q Consensus       197 ~igvav~~~~~~~~~~~~~gL~vpvi~~a~~~s~~l~~~~~~~i~~~~~~l~~~ar~~g~L~~~~~~ggTftiSn~G~~G  276 (431)
                      |||+||++     +    +||++|||+|+++++  |     .+|++++++++++|| +|+|+++|++||||||||+||||
T Consensus       291 ~igiAV~t-----~----~GL~vPvi~~a~~~s--l-----~eia~~~~~l~~~ar-~gkL~~~e~~ggtftISnlG~~G  353 (428)
T 3dva_I          291 NIGIAADT-----D----RGLLVPVIKHADRKP--I-----FALAQEINELAEKAR-DGKLTPGEMKGASCTITNIGSAG  353 (428)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             CeEEEEEc-----C----CceEEeeeccCCCCC--H-----HHHHHHHHHHHHHHH-cCCCCccccCCCEEEEEcCCCCC
Confidence            99999999     8    999999999999999  9     999999999999999 99999999999999999999999


Q ss_pred             ccceeeccCCCcceeeeccceeEEEeeeCCeEEEeeeeeeeeeeeeeeeehHHHHHHHHHHHhHhhhh
Q psy14345        277 SLLGTPIINPPQSAILGMHGTFERPVAIKGQVVVKPMMYVALTYDHRLIDGREAVLFLQKEAHLEAFQ  344 (431)
Q Consensus       277 ~~~~~pii~ppq~ail~vG~i~~~pv~~~g~~~~~~~m~lslt~DHRvIDg~~a~~fl~~lk~l~~~~  344 (431)
                      ++.|+|||||||+||||+|++.++||+.+|+++++++|+++++||||+|||..+++|++.++++.+.+
T Consensus       354 ~~~ftpIin~pq~aIl~vG~i~~~pv~~~g~i~~r~~m~lsls~DHRviDG~~aa~Fl~~lk~~Le~P  421 (428)
T 3dva_I          354 GQWFTPVINHPEVAILGIGRIAEKPIVRDGEIVAAPMLALSLSFDHRMIDGATAQKALNHIKRLLSDP  421 (428)
T ss_dssp             --------------------------------------------------------------------
T ss_pred             ccceEeecCCCCceEEEccccEEEEEEECCEEEEeeeEEEEEEecccccchHHHHHHHHHHHHHHhCH
Confidence            99999999999999999999999999999999999999999999999999999999999999876653

>3mae_A 2-oxoisovalerate dehydrogenase E2 component, dihydrolipamide acetyltransferase; 2-oxoacid dehydrogenases acyltransferase; 2.50A {Listeria monocytogenes}

Probab=100.00  E-value=4.2e-61  Score=464.50  Aligned_cols=227  Identities=29%  Similarity=0.446  Sum_probs=219.4

Q ss_pred             CCCceEEeccHHHHHHHHHHHHhcccceEEEEeeeccchHHHHHHHHHHHHHHhhcCCCCChhHHHHHHHHHHHhhCCcc
Q psy14345        102 TRSEQRVKMNRMRQRIAQRLKEAQNVNAMLTTFNEIDMSAIIEFRKAHLEAFQKKYGLKLGFMSPFIKASAYALQDQPVV  181 (431)
Q Consensus       102 ~~~~~~vpls~~Rk~ia~~m~~S~~~iP~~t~~~evD~t~l~~~r~~l~~~~~~~~g~k~t~~~~~ikA~a~Al~~~P~~  181 (431)
                      .+.++++|++++||+||++|++|++++||||++.+||+|+|+++|+++|+.+.++.|.|+||++|++||++.||++||+|
T Consensus        15 ~~~~~~~pl~~~rk~ia~~m~~S~~~iP~~t~~~evDvt~l~~~r~~~k~~~~~~~g~kls~~~~iikAva~AL~~~P~~   94 (256)
T 3mae_A           15 AAGDKEIPINGVRKAIAKHMSVSKQEIPHAWMMVEVDATGLVRYRNAVKDSFKKEEGYSLTYFAFFIKAVAQALKEFPQL   94 (256)
T ss_dssp             CCSCEEEECCHHHHHHHHHHHHHHHHSCEEEEEEEEECHHHHHHHHHHHHHHHHHHSSCCCHHHHHHHHHHHHHHHCTTT
T ss_pred             CCCceEEeCcHHHHHHHHHHHHHhccCCeEEEEEEEEHHHHHHHHHHHHhhhhhhcCCCccHHHHHHHHHHHHHHhCHHh
Confidence            45678999999999999999999999999999999999999999999998877777899999999999999999999999


Q ss_pred             ceeeeCCeeEecCcccEEEEEeecCCCCCCccCCcEEEEeecCCCccccccccCChhHHHHHHHHHHhhhhhcCCCCccc
Q psy14345        182 NAVIEGTDIVYRDYVDISVGMGRNESNLPRWCFNGLLSGVLVLTEHLNGKYCVSSRPSYERHTTGWACYDRLNWNLAIED  261 (431)
Q Consensus       182 N~~~~~~~i~~~~~v~igvav~~~~~~~~~~~~~gL~vpvi~~a~~~s~~l~~~~~~~i~~~~~~l~~~ar~~g~L~~~~  261 (431)
                      |++|++++|++++++|||+||++     +    +||++|||+|+|+++  +     .+|++++++++++|| +|+|+++|
T Consensus        95 Na~~~~~~i~~~~~vnigiAV~t-----~----~GL~vPvi~~ad~~s--l-----~ei~~~i~~l~~~Ar-~gkL~~~e  157 (256)
T 3mae_A           95 NSTWAGDKIIEHANINISIAIAA-----G----DLLYVPVIKNADEKS--I-----KGIAREISELAGKAR-NGKLSQAD  157 (256)
T ss_dssp             SEEEETTEEEECSSCCEEECCCC-----T----TSCCCCEETTGGGSC--H-----HHHHHHHHHHHHHHH-TTCCCHHH
T ss_pred             hhEEecCEEEEcCcEEEEeEEEc-----C----CceEEEEEcCCCCCC--H-----HHHHHHHHHHHHHHh-cCCCCchh
Confidence            99999999999999999999999     8    999999999999999  9     999999999999999 99999999


Q ss_pred             CCCceEEEecCCCCCccceeeccCCCcceeeeccceeEEEeeeCCeEEEeeeeeeeeeeeeeeeehHHHHHHHHHHHhHh
Q psy14345        262 SDGGTFTISNGGVFGSLLGTPIINPPQSAILGMHGTFERPVAIKGQVVVKPMMYVALTYDHRLIDGREAVLFLQKEAHLE  341 (431)
Q Consensus       262 ~~ggTftiSn~G~~G~~~~~pii~ppq~ail~vG~i~~~pv~~~g~~~~~~~m~lslt~DHRvIDg~~a~~fl~~lk~l~  341 (431)
                      ++||||||||+||||++.|+|||||||+||||+|+++++||+.+|+++++++|+++++||||+|||..+++|++.++++.
T Consensus       158 ~~ggTftISNlG~~G~~~ftpIInppq~aIL~vG~i~~~pv~~~g~i~~r~~m~lsLs~DHRviDGa~aa~Fl~~lk~~L  237 (256)
T 3mae_A          158 MEGGTFTVNSTGSFGSVQSMGIINHPQAAILQVESIVKRPVIIDDMIAVRDMVNLCLSIDHRILDGLLAGKFLQAIKANV  237 (256)
T ss_dssp             HSCCSEEEECGGGGTCSEEECCCCTTSSEEEEEEEEEEEEEEETTEEEEEEEEEEEEEEETTTCCHHHHHHHHHHHHHHH
T ss_pred             cCCCEEEEecCCCCCccceEcccCCCCceEEEecccEEEEEEECCEEEEeEEEEEEEEEccccccHHHHHHHHHHHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999876


Q ss_pred             hhhh
Q psy14345        342 AFQK  345 (431)
Q Consensus       342 ~~~~  345 (431)
                      +.+.
T Consensus       238 e~P~  241 (256)
T 3mae_A          238 EKIS  241 (256)
T ss_dssp             HTCC
T ss_pred             hChH
Confidence            6543

>1scz_A E2, dihydrolipoamide succinyltransferase; COA-dependent acyltransferase, CAT-like, alpha and beta (2 L mixed beta-sheeet of 6 strands; 2.20A {Escherichia coli} SCOP: c.43.1.1 PDB: 1e2o_A 1c4t_A

Probab=100.00  E-value=3.9e-60  Score=452.81  Aligned_cols=222  Identities=53%  Similarity=0.845  Sum_probs=215.3

Q ss_pred             ceEEeccHHHHHHHHHHHHhcccceEEEEeeeccchHHHHHHHHHHHHHHhhcCCCCChhHHHHHHHHHHHhhCCcccee
Q psy14345        105 EQRVKMNRMRQRIAQRLKEAQNVNAMLTTFNEIDMSAIIEFRKAHLEAFQKKYGLKLGFMSPFIKASAYALQDQPVVNAV  184 (431)
Q Consensus       105 ~~~vpls~~Rk~ia~~m~~S~~~iP~~t~~~evD~t~l~~~r~~l~~~~~~~~g~k~t~~~~~ikA~a~Al~~~P~~N~~  184 (431)
                      ++++|++++||+||++|++|++++||||++.+||+|+|+++|+++|+.+.++.|.|+||++|++||++.||++||+||++
T Consensus         4 ~~~~~~~~~r~~ia~~m~~S~~~~P~~~~~~evdvt~l~~~r~~~k~~~~~~~g~kls~~~~~ikA~~~Al~~~P~~Na~   83 (233)
T 1scz_A            4 EKRVPMTRLRKRVAERLLEAKNSTAMLTTFNEVNMKPIMDLRKQYGEAFEKRHGIRLGFMSFYVKAVVEALKRYPEVNAS   83 (233)
T ss_dssp             CCCCCCCHHHHHHHHHHHHHHTTSCEEEEEEEEECHHHHHHHHHHHHHHHHHHSSCCCSHHHHHHHHHHHHHHCTTTTCE
T ss_pred             ceeccCCHHHHHHHHHHHHhccCCCEEEEEEEEEcHHHHHHHHHHHhhhhhhcCCcccHHHHHHHHHHHHHHhChHhhEE
Confidence            56789999999999999999999999999999999999999999998777677899999999999999999999999999


Q ss_pred             eeCCeeEecCcccEEEEEeecCCCCCCccCCcEEEEeecCCCccccccccCChhHHHHHHHHHHhhhhhcCCCCcccCCC
Q psy14345        185 IEGTDIVYRDYVDISVGMGRNESNLPRWCFNGLLSGVLVLTEHLNGKYCVSSRPSYERHTTGWACYDRLNWNLAIEDSDG  264 (431)
Q Consensus       185 ~~~~~i~~~~~v~igvav~~~~~~~~~~~~~gL~vpvi~~a~~~s~~l~~~~~~~i~~~~~~l~~~ar~~g~L~~~~~~g  264 (431)
                      |+++++++++++|||+||++     +    +||++|||+++++++  +     .+|++++++++++|| +|+|+++|++|
T Consensus        84 ~~~~~i~~~~~v~igiAV~~-----~----~GL~vPvi~~a~~~~--l-----~~i~~~~~~l~~~ar-~~kL~~~e~~g  146 (233)
T 1scz_A           84 IDGDDVVYHNYFDVSMAVST-----P----RGLVTPVLRDVDTLG--M-----ADIEKKIKELAVKGR-DGKLTVEDLTG  146 (233)
T ss_dssp             EETTEEECCSSCCEEECEEE-----T----TEEECCEETTGGGCC--H-----HHHHHHHHHHHHHTT-TTCCCHHHHSC
T ss_pred             EeCCEEEEeCceeEEEEEEc-----C----CcEEEEEEcCCCCCC--H-----HHHHHHHHHHHHHHH-cCCCCccccCC
Confidence            99999999999999999999     8    999999999999999  9     999999999999999 99999999999


Q ss_pred             ceEEEecCCCCCccceeeccCCCcceeeeccceeEEEeeeCCeEEEeeeeeeeeeeeeeeeehHHHHHHHHHHHhHhhh
Q psy14345        265 GTFTISNGGVFGSLLGTPIINPPQSAILGMHGTFERPVAIKGQVVVKPMMYVALTYDHRLIDGREAVLFLQKEAHLEAF  343 (431)
Q Consensus       265 gTftiSn~G~~G~~~~~pii~ppq~ail~vG~i~~~pv~~~g~~~~~~~m~lslt~DHRvIDg~~a~~fl~~lk~l~~~  343 (431)
                      |||||||+||||++.|+|||||||+||||+|+++++|++.+|+++++++|+++++||||+|||..+++|++.++++.+.
T Consensus       147 gtftISnlG~~G~~~~tpIin~pq~aIl~vG~~~~~pv~~~g~i~~r~~m~lsls~DHRviDGa~aa~Fl~~lk~~le~  225 (233)
T 1scz_A          147 GNFTITNGGVFGSLMSTPIINPPQSAILGMHAIKDRPMAVNGQVEILPMMYLALSYDHRLIDGRESVGFLVTIKELLED  225 (233)
T ss_dssp             CSEEEEEGGGGTCCCCCCCCCTTCSEEEEEEEEEEEEEEETTEEEEEEEEEEEEEEETTTCCHHHHHHHHHHHHHHHHC
T ss_pred             CEEEEEeCCCCCccceEcccCCCCcEEEEccccEEEEEEECCEEEEEEEEEEEEEEcceeechHHHHHHHHHHHHHHhC
Confidence            9999999999999999999999999999999999999999999999999999999999999999999999999986654

>3l60_A Branched-chain alpha-keto acid dehydrogenase; structural genomics, PSI-2, protein structure initiative; 2.00A {Mycobacterium tuberculosis} SCOP: c.43.1.0

Probab=100.00  E-value=1.6e-59  Score=452.02  Aligned_cols=222  Identities=23%  Similarity=0.358  Sum_probs=209.7

Q ss_pred             CCCCceEEeccHHHHHHHHHHHHhcccceEEEEeeeccchHHHHHHHHHHHHHHhhcCCCCChhHHHHHHHHHHHhhCCc
Q psy14345        101 GTRSEQRVKMNRMRQRIAQRLKEAQNVNAMLTTFNEIDMSAIIEFRKAHLEAFQKKYGLKLGFMSPFIKASAYALQDQPV  180 (431)
Q Consensus       101 ~~~~~~~vpls~~Rk~ia~~m~~S~~~iP~~t~~~evD~t~l~~~r~~l~~~~~~~~g~k~t~~~~~ikA~a~Al~~~P~  180 (431)
                      +.+..++ |++++||+||++|++|++++||||++.+||+|+|+++|+++|+     .|.|+||++|++||+++||++||+
T Consensus        11 ~~~~~~r-pls~~rk~ia~~m~~S~~~iP~~~~~~evDvt~l~~~r~~~k~-----~~~kls~~~~iikAva~AL~~~P~   84 (250)
T 3l60_A           11 GAGPDVR-PVHGVHARMAEKMTLSHKEIPTAKASVEVICAELLRLRDRFVS-----AAPEITPFALTLRLLVIALKHNVI   84 (250)
T ss_dssp             ---CCCC-CCCHHHHHHHHHHHHHHHHCCEEEEEEEEECHHHHHHHHHHTT-----TCTTCCHHHHHHHHHHHHHHHCGG
T ss_pred             CCCCCCC-CCcHHHHHHHHHHHHHhhcCCeEEEEEEEEHHHHHHHHHHHhh-----cCCCCCHHHHHHHHHHHHHHhCHH
Confidence            3445556 9999999999999999999999999999999999999999753     378999999999999999999999


Q ss_pred             cceeeeC----CeeEecCcccEEEEEeecCCCCCCccCCcEEEEeecCCCccccccccCChhHHHHHHHHHHhhhhhcCC
Q psy14345        181 VNAVIEG----TDIVYRDYVDISVGMGRNESNLPRWCFNGLLSGVLVLTEHLNGKYCVSSRPSYERHTTGWACYDRLNWN  256 (431)
Q Consensus       181 ~N~~~~~----~~i~~~~~v~igvav~~~~~~~~~~~~~gL~vpvi~~a~~~s~~l~~~~~~~i~~~~~~l~~~ar~~g~  256 (431)
                      ||++|++    ++|++++++|||+||++     +    +||++|||+|+++++  +     .+|++++++++++|| +|+
T Consensus        85 ~Na~~~~~~~~~~i~~~~~vnigvAV~t-----~----~GL~vPvi~~ad~~s--l-----~ei~~~i~~l~~~Ar-~gk  147 (250)
T 3l60_A           85 LNSTWVDSGEGPQVHVHRGVHLGFGAAT-----E----RGLLVPVVTDAQDKN--T-----RELASRVAELITGAR-EGT  147 (250)
T ss_dssp             GSEEEECTTTSCEEEECSSCCEEECEEE-----T----TEEECCEETTGGGCC--H-----HHHHHHHHHHHHHHH-HTC
T ss_pred             hhEEEeccCCCCeEEEcCceeEEEEEEc-----C----CCeEEeEEecCCCCC--H-----HHHHHHHHHHHHHHH-cCC
Confidence            9999975    49999999999999999     8    999999999999999  9     999999999999999 999


Q ss_pred             CCcccCCCceEEEecCCCCCccceeeccCCCcceeeeccceeEEEeeeCCeEEEeeeeeeeeeeeeeeeehHHHHHHHHH
Q psy14345        257 LAIEDSDGGTFTISNGGVFGSLLGTPIINPPQSAILGMHGTFERPVAIKGQVVVKPMMYVALTYDHRLIDGREAVLFLQK  336 (431)
Q Consensus       257 L~~~~~~ggTftiSn~G~~G~~~~~pii~ppq~ail~vG~i~~~pv~~~g~~~~~~~m~lslt~DHRvIDg~~a~~fl~~  336 (431)
                      |+++|++||||||||+||||++.|+|||||||+||||+|+++++||+.+|+++++++|+++++||||+|||..+++|++.
T Consensus       148 L~~~e~~ggTftISNlG~~G~~~ftpIinppq~aIL~vG~i~~~pv~~~g~i~~r~~m~lsLs~DHRviDGa~aa~Fl~~  227 (250)
T 3l60_A          148 LTPAELRGSTFTVSNFGALGVDDGVPVINHPEAAILGLGAIKPRPVVVGGEVVARPTMTLTCVFDHRVVDGAQVAQFMCE  227 (250)
T ss_dssp             CCGGGGSCCSEEEECGGGGTCSSCCCCCCTTCSEEEEECCCEEEEEEETTEEEEEEEEEEEEEEETTTCCHHHHHHHHHH
T ss_pred             CChhhcCCCEEEEEcCCCCCcceeEeeeCCCCceEEEecceEEEeEEECCEEEEEEEeEEEEEecccccCHHHHHHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHhHhhhhh
Q psy14345        337 EAHLEAFQK  345 (431)
Q Consensus       337 lk~l~~~~~  345 (431)
                      ++++.+.+.
T Consensus       228 lk~~Le~P~  236 (250)
T 3l60_A          228 LRDLIESPE  236 (250)
T ss_dssp             HHHHHHSHH
T ss_pred             HHHHHhCHH
Confidence            998766543

>1dpb_A Dihydrolipoyl-transacetylase; dihydrolipoamide acetyltransferase; 2.50A {Azotobacter vinelandii} SCOP: c.43.1.1 PDB: 1dpd_A 1eaa_A 1eab_A* 1eac_A* 1ead_A* 1eae_A* 1eaf_A 1dpc_A

Probab=100.00  E-value=1.1e-58  Score=445.38  Aligned_cols=224  Identities=28%  Similarity=0.384  Sum_probs=213.6

Q ss_pred             CCceEEeccHHHHHHHHHHHHhcccceEEEEeeeccchHHHHHHHHHHHHHHhhcCCCCChhHHHHHHHHHHHhhCCccc
Q psy14345        103 RSEQRVKMNRMRQRIAQRLKEAQNVNAMLTTFNEIDMSAIIEFRKAHLEAFQKKYGLKLGFMSPFIKASAYALQDQPVVN  182 (431)
Q Consensus       103 ~~~~~vpls~~Rk~ia~~m~~S~~~iP~~t~~~evD~t~l~~~r~~l~~~~~~~~g~k~t~~~~~ikA~a~Al~~~P~~N  182 (431)
                      +..+++|++++||.||++|++||+++||||++.+||+|+|+++|+++|+.+.+ .|.|+||++|++||+++||++||+||
T Consensus        13 ~~~~~~~~~~~rk~ia~~m~~S~~~~P~~~~~~evDvt~l~~~r~~~k~~~~~-~g~kls~~~~~ikA~~~Al~~~P~~N   91 (243)
T 1dpb_A           13 GEIEEVPMTRLMQIGATNLHRSWLNVPHVTQFESADITELEAFRVAQKAVAEK-AGVKLTVLPLLLKACAYLLKELPDFN   91 (243)
T ss_dssp             SCCCCCCCCHHHHHHHHHHHHHHHHSCEEEEEEEEECHHHHHHHHHTHHHHHH-TTCCCCSHHHHHHHHHHHHHHSGGGG
T ss_pred             CCceEeeCcHHHHHHHHHHHHhCcCCCeEEEEEEEEhHHHHHHHHHHhhhhhh-ccCCCChHHHHHHHHHHHHHhChHhh
Confidence            34577899999999999999999999999999999999999999999876543 48999999999999999999999999


Q ss_pred             eeeeC--CeeEecCcccEEEEEeecCCCCCCccCCcEEEEeecCCCccccccccCChhHHHHHHHHHHhhhhhcCCCCcc
Q psy14345        183 AVIEG--TDIVYRDYVDISVGMGRNESNLPRWCFNGLLSGVLVLTEHLNGKYCVSSRPSYERHTTGWACYDRLNWNLAIE  260 (431)
Q Consensus       183 ~~~~~--~~i~~~~~v~igvav~~~~~~~~~~~~~gL~vpvi~~a~~~s~~l~~~~~~~i~~~~~~l~~~ar~~g~L~~~  260 (431)
                      ++|++  ++|++++++|||+||++     +    +||++|||+|+|+++  +     .+|++++++++++|| +|+|+++
T Consensus        92 a~~~~~~~~i~~~~~v~igiAV~t-----~----~GL~vPvi~~a~~~s--l-----~ei~~~~~~l~~~ar-~~kL~~~  154 (243)
T 1dpb_A           92 SSLAPSGQALIRKKYVHIGFAVDT-----P----DGLLVPVIRNVDQKS--L-----LQLAAEAAELAEKAR-SKKLGAD  154 (243)
T ss_dssp             EEECTTSSCEEECSSCCEEECEEE-----T----TEEECCEETTGGGSC--H-----HHHHHHHHHHHHHHH-TTCCCGG
T ss_pred             EEEecCCCeEEEeCceeEEEEEEC-----C----CcEEEEEeCCCCCCC--H-----HHHHHHHHHHHHHHH-cCCCCcc
Confidence            99985  49999999999999999     8    999999999999999  9     999999999999999 9999999


Q ss_pred             cCCCceEEEecCCCCCccceeeccCCCcceeeeccceeEEEeeeCCeEEEeeeeeeeeeeeeeeeehHHHHHHHHHHHhH
Q psy14345        261 DSDGGTFTISNGGVFGSLLGTPIINPPQSAILGMHGTFERPVAIKGQVVVKPMMYVALTYDHRLIDGREAVLFLQKEAHL  340 (431)
Q Consensus       261 ~~~ggTftiSn~G~~G~~~~~pii~ppq~ail~vG~i~~~pv~~~g~~~~~~~m~lslt~DHRvIDg~~a~~fl~~lk~l  340 (431)
                      |++||||||||+||||++.|+|||||||+||||+|+++++||+.+|+++++++|+++++||||+|||..+++|++.++++
T Consensus       155 e~~ggtftISnlG~~g~~~~tpIin~pq~aIl~vG~~~~~pv~~~g~i~~~~~m~lsls~DHRviDGa~aa~Fl~~lk~~  234 (243)
T 1dpb_A          155 AMQGACFTISSLGHIGGTAFTPIVNAPEVAILGVSKASMQPVWDGKAFQPRLMLPLSLSYDCRVINGAAAARFTKRLGDL  234 (243)
T ss_dssp             GGSCCSEEEEECTTTCCSCCCCCCCTTSSEEEEECCCEEEEEECSSSEEEEEEEEEEEEEETTTSCHHHHHHHHHHHHHH
T ss_pred             ccCCCEEEEEcCCCCCccceECccCCCCCeEEEccccEEEEEEECCeEEEEEEEEEEEEECcccccHHHHHHHHHHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999987


Q ss_pred             hhhh
Q psy14345        341 EAFQ  344 (431)
Q Consensus       341 ~~~~  344 (431)
                      .+.+
T Consensus       235 le~p  238 (243)
T 1dpb_A          235 LADI  238 (243)
T ss_dssp             HHCG
T ss_pred             HhCH
Confidence            6643

>2ii3_A Lipoamide acyltransferase component of branched-C alpha-keto acid dehydrogenase complex...; cubic core, HOMO trimer, oxidized COA-bound form; HET: CAO; 2.17A {Bos taurus} PDB: 2ihw_A* 2ii4_A* 2ii5_A*

Probab=100.00  E-value=7.1e-58  Score=443.79  Aligned_cols=223  Identities=23%  Similarity=0.335  Sum_probs=211.7

Q ss_pred             CCceEEeccHHHHHHHHHHHHhcccceEEEEeeeccchHHHHHHHHHHHHHHhhcCCCCChhHHHHHHHHHHHhhCCccc
Q psy14345        103 RSEQRVKMNRMRQRIAQRLKEAQNVNAMLTTFNEIDMSAIIEFRKAHLEAFQKKYGLKLGFMSPFIKASAYALQDQPVVN  182 (431)
Q Consensus       103 ~~~~~vpls~~Rk~ia~~m~~S~~~iP~~t~~~evD~t~l~~~r~~l~~~~~~~~g~k~t~~~~~ikA~a~Al~~~P~~N  182 (431)
                      +.++++|+++|||+||++|++|+ ++||||++.+||+|+|+++|+++|+.. ++.|.|+||++|++||++.||++||+||
T Consensus        29 ~~~~~~p~~~~rk~ia~~m~~S~-~~P~~~~~~evDvt~l~~~r~~~k~~~-~~~g~kls~~~~~ikAva~Al~~~P~~N  106 (262)
T 2ii3_A           29 GKDRTEPVKGFHKAMVKTMSAAL-KIPHFGYCDEVDLTELVKLREELKPIA-FARGIKLSFMPFFLKAASLGLLQFPILN  106 (262)
T ss_dssp             CCCEEEECCGGGHHHHHHHHHGG-GSCEEEEEEEEECHHHHHHHHHHHHHH-HHTTCCCCSHHHHHHHHHHHHHHCGGGS
T ss_pred             CCcceecCCHHHHHHHHHHHHhh-hCCeEEEEEEEEhHHHHHHHHHHhhhh-hhccCCccHHHHHHHHHHHHHHhChHhh
Confidence            45778999999999999999997 699999999999999999999998743 3458999999999999999999999999


Q ss_pred             eeeeC--CeeEecCcccEEEEEeecCCCCCCccCCcEEEEeecCCCccccccccCChhHHHHHHHHHHhhhhhcCCCCcc
Q psy14345        183 AVIEG--TDIVYRDYVDISVGMGRNESNLPRWCFNGLLSGVLVLTEHLNGKYCVSSRPSYERHTTGWACYDRLNWNLAIE  260 (431)
Q Consensus       183 ~~~~~--~~i~~~~~v~igvav~~~~~~~~~~~~~gL~vpvi~~a~~~s~~l~~~~~~~i~~~~~~l~~~ar~~g~L~~~  260 (431)
                      ++|++  ++|++++++|||+||++     +    +||++|||+|+++++  |     .+|++++++++++|| +|+|+++
T Consensus       107 a~~~~~~~~i~~~~~v~igiAV~t-----~----~GL~vPvi~~a~~~s--l-----~ei~~~~~~l~~~ar-~~kL~~~  169 (262)
T 2ii3_A          107 ASVDENCQNITYKASHNIGIAMDT-----E----QGLIVPNVKNVQIRS--I-----FEIATELNRLQKLGS-AGQLSTN  169 (262)
T ss_dssp             EEECTTSCEEEECSSCCEEECEEE-----T----TEEECCEETTGGGCC--H-----HHHHHHHHHHHHHHH-HTCCCHH
T ss_pred             EEEeCCCCEEEEecccceEEEEEc-----C----CCEEEEEecCCCCCC--H-----HHHHHHHHHHHHHHH-hCCCCcc
Confidence            99985  48999999999999999     8    999999999999999  9     999999999999999 9999999


Q ss_pred             cCCCceEEEecCCCCCccceeeccCCCcceeeeccceeEEEeee-CCeEEEeeeeeeeeeeeeeeeehHHHHHHHHHHHh
Q psy14345        261 DSDGGTFTISNGGVFGSLLGTPIINPPQSAILGMHGTFERPVAI-KGQVVVKPMMYVALTYDHRLIDGREAVLFLQKEAH  339 (431)
Q Consensus       261 ~~~ggTftiSn~G~~G~~~~~pii~ppq~ail~vG~i~~~pv~~-~g~~~~~~~m~lslt~DHRvIDg~~a~~fl~~lk~  339 (431)
                      |++||||||||+||||++.|+|||||||+||||+|+++++|++. +|+++++++|+++++||||+|||..+++|++.+++
T Consensus       170 e~~ggTftISNlG~~G~~~~tPIinppq~aIL~vG~~~~~pv~~~~g~i~~r~~m~lsls~DHRviDGa~aa~Fl~~lk~  249 (262)
T 2ii3_A          170 DLIGGTFTLSNIGSIGGTYAKPVILPPEVAIGALGTIKALPRFNEKGEVCKAQIMNVSWSADHRIIDGATVSRFSNLWKS  249 (262)
T ss_dssp             HHSCCCEEEECGGGTCCSCEECCCCTTCCEEEEECCCEEEEEECTTSCEEEEEEEEEEEEEETTTCCHHHHHHHHHHHHH
T ss_pred             cCCCCEEEEEeCCCCCccceECccCCCcceEEEcCccEEEEEEecCCcEEEEeeeEEEEEECcceecHHHHHHHHHHHHH
Confidence            99999999999999999999999999999999999999999997 78999999999999999999999999999999998


Q ss_pred             Hhhhh
Q psy14345        340 LEAFQ  344 (431)
Q Consensus       340 l~~~~  344 (431)
                      +.+.+
T Consensus       250 ~Le~P  254 (262)
T 2ii3_A          250 YLENP  254 (262)
T ss_dssp             HHHST
T ss_pred             HHhCH
Confidence            76643

>3b8k_A PDCE2;, dihydrolipoyllysine-residue acetyltransferase; central beta-sheet surrounded by five alpha-helices; 8.80A {Homo sapiens}

Probab=100.00  E-value=8.7e-58  Score=438.32  Aligned_cols=222  Identities=27%  Similarity=0.338  Sum_probs=211.5

Q ss_pred             CCceEEeccHHHHHHHHHHHHhcccceEEEEeeeccchHHHHHHHHHHHHHHhhcCCCCChhHHHHHHHHHHHhhCCccc
Q psy14345        103 RSEQRVKMNRMRQRIAQRLKEAQNVNAMLTTFNEIDMSAIIEFRKAHLEAFQKKYGLKLGFMSPFIKASAYALQDQPVVN  182 (431)
Q Consensus       103 ~~~~~vpls~~Rk~ia~~m~~S~~~iP~~t~~~evD~t~l~~~r~~l~~~~~~~~g~k~t~~~~~ikA~a~Al~~~P~~N  182 (431)
                      +.++++|++++||+||++|++||+++||||++.+||+|+|+++|+++|+.+.+  +.|+||++|++||++.||++||+||
T Consensus        10 ~~~~~~~~~~~rk~ia~~m~~s~~~~P~~~~~~evDvt~l~~~r~~~k~~~~~--~~kls~~~~~ikAv~~Al~~~P~~N   87 (239)
T 3b8k_A           10 GVFTDIPISNIRRVIAQRLMQSKQTIPHYYLSIDVNMGEVLLVRKELNKILEG--RSKISVNDFIIKASALACLKVPEAN   87 (239)
T ss_dssp             CSCCCSSSCCSHHHHHHHHHHHHHHCCCCCEEEEECCTTHHHHHHHTHHHHTT--SSCCCHHHHHHHHHHHHHHHCCCSC
T ss_pred             CCceeccCChHHHHHHHHHHHhccCCCeEEEEEEEEcHHHHHHHHHHHhhhhc--cCCCCHHHHHHHHHHHHHHhChHhh
Confidence            45678899999999999999999999999999999999999999999875433  2599999999999999999999999


Q ss_pred             eeeeCCeeEecCcccEEEEEeecCCCCCCccCCcEEEEeecCCCccccccccCChhHHHHHHHHHHhhhhhcCCCCcccC
Q psy14345        183 AVIEGTDIVYRDYVDISVGMGRNESNLPRWCFNGLLSGVLVLTEHLNGKYCVSSRPSYERHTTGWACYDRLNWNLAIEDS  262 (431)
Q Consensus       183 ~~~~~~~i~~~~~v~igvav~~~~~~~~~~~~~gL~vpvi~~a~~~s~~l~~~~~~~i~~~~~~l~~~ar~~g~L~~~~~  262 (431)
                      ++|+++++++++++|||+||++     +    +||++|||+++|+++  +     .+|++++++++++|| +|+|+++|+
T Consensus        88 a~~~~~~i~~~~~v~igvAV~~-----~----~GL~vPvi~~a~~~~--l-----~~i~~~~~~l~~~ar-~~kL~~~e~  150 (239)
T 3b8k_A           88 SSWMDTVIRQNHVVDVSVAVST-----P----AGLITPIVFNAHIKG--V-----ETIANDVVSLATKAR-EGKLQPHEF  150 (239)
T ss_dssp             TTSCCCSSSCSCCCCEEECEEC-----S----SCEECCEECCSSCCC--H-----HHHHHHHHHHHHHHH-TTCCCGGGG
T ss_pred             EEEECCEEEEeCceeEEEEEEc-----C----CcEEEEEEcCCCCCC--H-----HHHHHHHHHHHHHHH-cCCCCcccc
Confidence            9999999999999999999999     8    999999999999999  9     999999999999999 999999999


Q ss_pred             CCceEEEecCCCCCccceeeccCCCcceeeeccceeEEEee--eCCeEEEeeeeeeeeeeeeeeeehHHHHHHHHHHHhH
Q psy14345        263 DGGTFTISNGGVFGSLLGTPIINPPQSAILGMHGTFERPVA--IKGQVVVKPMMYVALTYDHRLIDGREAVLFLQKEAHL  340 (431)
Q Consensus       263 ~ggTftiSn~G~~G~~~~~pii~ppq~ail~vG~i~~~pv~--~~g~~~~~~~m~lslt~DHRvIDg~~a~~fl~~lk~l  340 (431)
                      +||||||||+||||++.|+|||||||+||||+|+++++|++  .+|+++++++|+++++||||+|||..+++|++.++++
T Consensus       151 ~ggtftISnlG~~g~~~ftpiin~pq~aIl~vG~~~~~pv~~~~~g~i~~r~~m~lsls~DHRviDGa~aa~Fl~~lk~~  230 (239)
T 3b8k_A          151 QGGTFTISNLGMFGIKNFSAIINPPQACILAIGASEDKLVPADNEKGFDVASMMSVTLSCDHRVVDGAVGAQWLAEFRKY  230 (239)
T ss_dssp             CCCSEEEEECCSSCCSSCCCCCCTTSCCCCEECCCCCSCCCCCSSSSCCCCCCEEEEECCCCCSSCHHHHHHHHHHHHHH
T ss_pred             CCCEEEEEcCCCCCceeEECcCCCCceEEEECcccEEEEEEEcCCCcEEEEEEEEEEEEEcceeechHHHHHHHHHHHHH
Confidence            99999999999999999999999999999999999999999  4789999999999999999999999999999999986


Q ss_pred             hhh
Q psy14345        341 EAF  343 (431)
Q Consensus       341 ~~~  343 (431)
                      .+.
T Consensus       231 le~  233 (239)
T 3b8k_A          231 LEK  233 (239)
T ss_dssp             HHC
T ss_pred             HhC
Confidence            654

>3rqc_A Probable lipoamide acyltransferase; alpha beta fold; 4.01A {Thermoplasma acidophilum dsm 1728}

Probab=100.00  E-value=6.4e-57  Score=428.16  Aligned_cols=212  Identities=26%  Similarity=0.434  Sum_probs=202.0

Q ss_pred             CCceEEeccHHHHHHHHHHHHhcccceEEEEeeeccchHHHHHHHHHHHHHHhhcCCCCChhHHHHHHHHHHHhhCCccc
Q psy14345        103 RSEQRVKMNRMRQRIAQRLKEAQNVNAMLTTFNEIDMSAIIEFRKAHLEAFQKKYGLKLGFMSPFIKASAYALQDQPVVN  182 (431)
Q Consensus       103 ~~~~~vpls~~Rk~ia~~m~~S~~~iP~~t~~~evD~t~l~~~r~~l~~~~~~~~g~k~t~~~~~ikA~a~Al~~~P~~N  182 (431)
                      +.++++|++++||+||++|++|++++||||++.+||+|+|+++|+++|+.     |.|+||++|++||++.||++||+||
T Consensus         4 ~~~~~~p~~~~r~~ia~~m~~s~~~~P~~~~~~evDvt~l~~~r~~~k~~-----g~kls~~~~~ikA~~~Al~~~P~~N   78 (224)
T 3rqc_A            4 GREEILEMHGLRRIIFDKMTKAKQIMPHFTVMEEVDVTSMVSILDSAKAR-----NRKVTVTGFLARIVPSILKQYPYLN   78 (224)
T ss_dssp             --CBCCCCCHHHHHHHHHHHHHHHHSCEEEEEECCBTHHHHHHHHHHTTT-----TCCCCHHHHHHHHHHHHHHHSGGGS
T ss_pred             CCceEeeCcHHHHHHHHHHHHHhcCCCeEEEEEEEEHHHHHHHHHHHhhc-----CCCCCHHHHHHHHHHHHHHhCHHhh
Confidence            35678999999999999999999999999999999999999999997642     7899999999999999999999999


Q ss_pred             eeeeCC--eeEecCcccEEEEEeecCCCCCCccCCcEEEEeecCCCccccccccCChhHHHHHHHHHHhhhhhcCCCCcc
Q psy14345        183 AVIEGT--DIVYRDYVDISVGMGRNESNLPRWCFNGLLSGVLVLTEHLNGKYCVSSRPSYERHTTGWACYDRLNWNLAIE  260 (431)
Q Consensus       183 ~~~~~~--~i~~~~~v~igvav~~~~~~~~~~~~~gL~vpvi~~a~~~s~~l~~~~~~~i~~~~~~l~~~ar~~g~L~~~  260 (431)
                      ++|+++  ++++++++|||+||++     +    +||++|||+|+++++  +     .+|++++++++++|| +|+|+++
T Consensus        79 ~~~~~~~~~i~~~~~v~igiAV~~-----~----~GL~vPvi~~a~~~s--l-----~~i~~~~~~l~~~ar-~~~L~~~  141 (224)
T 3rqc_A           79 AIYDETRRVYILKKYYNIGIAVDT-----P----DGLNVFVIKDADRKS--M-----VEISAEISDKASRAR-ENKLQLD  141 (224)
T ss_dssp             BBCCSSTTCCCEECSCCEEEEEEC-----S----SCEEEEEESCGGGSC--H-----HHHHHHHHHHHHHHT-TTCCCGG
T ss_pred             eEEeCCCCEEEEeCccceEeEEEc-----C----CceEEeEECCCCCCC--H-----HHHHHHHHHHHHHHH-cCCCCcc
Confidence            999876  9999999999999999     8    999999999999999  9     999999999999999 9999999


Q ss_pred             cCCCceEEEecCCCCCccceeeccCCCcceeeeccceeEEEeeeCCeEEEeeeeeeeeeeeeeeeehHHHHHHHHHHHhH
Q psy14345        261 DSDGGTFTISNGGVFGSLLGTPIINPPQSAILGMHGTFERPVAIKGQVVVKPMMYVALTYDHRLIDGREAVLFLQKEAHL  340 (431)
Q Consensus       261 ~~~ggTftiSn~G~~G~~~~~pii~ppq~ail~vG~i~~~pv~~~g~~~~~~~m~lslt~DHRvIDg~~a~~fl~~lk~l  340 (431)
                      |++||||||||+||||++.|+|||||||+||||+|++.++|+        +++|+++++||||+|||..+++|++.++++
T Consensus       142 e~~ggtftISnlG~~G~~~~tpiin~pq~aIl~vG~~~~~p~--------r~~m~lsls~DHRviDGa~aa~Fl~~l~~~  213 (224)
T 3rqc_A          142 EVQDSTFTITNVGTIGGIMSTPIINYPEVAILGVHRILEREG--------RKYMYLSLSCDHRLIDGAVATRFIVDLKKV  213 (224)
T ss_dssp             GSCCCSEEEEECTTTCCSEEECCCCTTBSEEEEECCCEEETT--------EEECCEEEEEETTTSCHHHHHHHHHHHHHH
T ss_pred             ccCCCEEEEEcCCcCCccceEeccCCCCceEEEecccEEECC--------ceEEEEEEEeccceecHHHHHHHHHHHHHH
Confidence            999999999999999999999999999999999999999996        899999999999999999999999999987


Q ss_pred             hhhh
Q psy14345        341 EAFQ  344 (431)
Q Consensus       341 ~~~~  344 (431)
                      .+.+
T Consensus       214 le~p  217 (224)
T 3rqc_A          214 IEDP  217 (224)
T ss_dssp             HTCT
T ss_pred             HhCH
Confidence            6654

>2xt6_A 2-oxoglutarate decarboxylase; lyase, KDH, KGD; HET: TPP; 2.74A {Mycobacterium smegmatis}

Probab=100.00  E-value=5.1e-46  Score=419.99  Aligned_cols=211  Identities=18%  Similarity=0.211  Sum_probs=174.4

Q ss_pred             HHHHhcccceEEEEeeeccchHHHHHHHHHHHHHHhhcCCCCChhHHHHHHHHHHHhhCCccceeeeCC----eeEecCc
Q psy14345        120 RLKEAQNVNAMLTTFNEIDMSAIIEFRKAHLEAFQKKYGLKLGFMSPFIKASAYALQDQPVVNAVIEGT----DIVYRDY  195 (431)
Q Consensus       120 ~m~~S~~~iP~~t~~~evD~t~l~~~r~~l~~~~~~~~g~k~t~~~~~ikA~a~Al~~~P~~N~~~~~~----~i~~~~~  195 (431)
                      +|++|+ ++||+|++.+||+|+|+++|+++|+.+.++.|.|+||++||+||++.||++||+||++|+++    .|+++++
T Consensus         1 ~m~~S~-~~P~~t~~~evDvt~l~~~R~~~k~~~~~~~g~kls~~~~iikAva~AL~~~P~~Na~~~~~~~~~~i~~~~~   79 (1113)
T 2xt6_A            1 GMNASL-EVPTATSVRAIPAKLMIDNRVVINNHLKRTRGGKISFTHLLGYAIVQAVKKFPNMNRHFAVVDGKPTAITPAH   79 (1113)
T ss_dssp             -------CCCEEEEEEEEECHHHHHHHHHHHHHHHHTTCCCCCHHHHHHHHHHHHHHHCGGGGCEEEESSSSEEEECCSS
T ss_pred             Chhhhc-cCCeEEEEEEEehHHHHHHHHHHHhhhhhhcCCCccHHHHHHHHHHHHHHhChHhhEEEeccCCCceEEEeCc
Confidence            689996 89999999999999999999999987777778999999999999999999999999999853    7999999


Q ss_pred             ccEEEEEeecCCCCC-CccCCcEEEEeecCCCccccccccCChhHHHHHHHHHHhhhhhcCCCCcccCCCceEEEecCCC
Q psy14345        196 VDISVGMGRNESNLP-RWCFNGLLSGVLVLTEHLNGKYCVSSRPSYERHTTGWACYDRLNWNLAIEDSDGGTFTISNGGV  274 (431)
Q Consensus       196 v~igvav~~~~~~~~-~~~~~gL~vpvi~~a~~~s~~l~~~~~~~i~~~~~~l~~~ar~~g~L~~~~~~ggTftiSn~G~  274 (431)
                      |||||||++     + +.|.+||+||||+|+++++  |     .+|++++++++++|| +|+|+++|++||||||||+||
T Consensus        80 vnigiAV~t-----~~~~G~~gL~vPvI~~a~~~s--l-----~ei~~~i~~l~~rAr-~gkL~~~d~~ggTftISNlG~  146 (1113)
T 2xt6_A           80 TNLGLAIDL-----QGKDGNRSLVVAAIKRCETMR--F-----GQFIAAYEDIVRRAR-DGKLTAEDFSGVTISLTNPGT  146 (1113)
T ss_dssp             CCEEEEC----------------CEEEECCGGGCC--H-----HHHHHHHHHHHHHHT-TTCCCGGGTSCCSEEEECC--
T ss_pred             ccEEEEEec-----cCCCCceeEEeeeecCCCCCC--H-----HHHHHHHHHHHHHHh-cCCCCccccCCCEEEEeCCCc
Confidence            999999999     5 1233569999999999999  9     999999999999999 999999999999999999999


Q ss_pred             CCccceeeccCCCcceeeeccceeEEEeeeC------CeEEEeeeeeeeeeeeeeeeehHHHHHHHHHHHhHhhhh
Q psy14345        275 FGSLLGTPIINPPQSAILGMHGTFERPVAIK------GQVVVKPMMYVALTYDHRLIDGREAVLFLQKEAHLEAFQ  344 (431)
Q Consensus       275 ~G~~~~~pii~ppq~ail~vG~i~~~pv~~~------g~~~~~~~m~lslt~DHRvIDg~~a~~fl~~lk~l~~~~  344 (431)
                      ||++.|+|||||||+||||+|+++++|++.+      |+++++++|+++++||||+|||..+++|++.++++.+.+
T Consensus       147 ~G~~~~tPIinppq~aIL~vG~i~~~pv~~~~~~~~~g~i~~r~~m~lsls~DHRviDGa~aa~FL~~lk~~Le~p  222 (1113)
T 2xt6_A          147 LGTVHSVPRLMQGQGAIIGAGAMEYPAEFQGASEERIADLGIGKLITLTSTYDHRIIQGAESGDFLRTIHQLLLDD  222 (1113)
T ss_dssp             ----------CTTCSEEEEECCCBCCTTSTTCCHHHHHHHTCCCEEEEEEEEETTTCCHHHHHHHHHHHHHHTTCH
T ss_pred             CCCcceECCCCCCCceEEEcCccEEEeEEcCCCcccCCceeEeeeeEEEEEECcceechHHHHHHHHHHHHHHhCc
Confidence            9999999999999999999999999999876      579999999999999999999999999999999876543

>1q23_A Chloramphenicol acetyltransferase; CAT I, trimer, fusidic acid; HET: FUA; 2.18A {Escherichia coli} SCOP: c.43.1.1 PDB: 1noc_B 1pd5_A* 3u9b_A 3u9f_A*

Probab=100.00  E-value=3.2e-40  Score=312.30  Aligned_cols=198  Identities=13%  Similarity=0.111  Sum_probs=169.9

Q ss_pred             EEeccHH-HHHHHHHHHHhcccceEEEEeeeccchHHHHHHHHHHHHHHhhcCCCCChhHHHHHHHHHHHhhCCccceee
Q psy14345        107 RVKMNRM-RQRIAQRLKEAQNVNAMLTTFNEIDMSAIIEFRKAHLEAFQKKYGLKLGFMSPFIKASAYALQDQPVVNAVI  185 (431)
Q Consensus       107 ~vpls~~-Rk~ia~~m~~S~~~iP~~t~~~evD~t~l~~~r~~l~~~~~~~~g~k~t~~~~~ikA~a~Al~~~P~~N~~~  185 (431)
                      .+.+..- ||.--+-. .+ .++||+|++.+||+|+|+++|++          .++||++|++||++.||++||++|++|
T Consensus        10 ~id~~~W~R~~~f~~f-~~-~~~P~~t~~~evDvt~l~~~rk~----------~~ls~~~~~ikAv~~Al~~~P~~Na~~   77 (219)
T 1q23_A           10 TVDISQWHRKEHFEAF-QS-VAQCTYNQTVQLDITAFLKTVKK----------NKHKFYPAFIHILARLMNAHPEFRMAM   77 (219)
T ss_dssp             ECCGGGCTTHHHHHHH-TT-TTCEEEEEEEEEECHHHHHHHHH----------TTCCHHHHHHHHHHHHHTTCGGGSEEE
T ss_pred             eECcccCCCHHHHHHh-cC-CCCcEEEEEEEEEhHHHHHHHHH----------cCCCHHHHHHHHHHHHHHhChHhhEEE
Confidence            3434333 33333333 34 68999999999999999999865          379999999999999999999999999


Q ss_pred             eCCeeEecCcccEEEEE-eecCCCCCCccCCcEEEEeecCCCccccccccCChhHHHHHHHHHHhhhhhcC-CCCc-ccC
Q psy14345        186 EGTDIVYRDYVDISVGM-GRNESNLPRWCFNGLLSGVLVLTEHLNGKYCVSSRPSYERHTTGWACYDRLNW-NLAI-EDS  262 (431)
Q Consensus       186 ~~~~i~~~~~v~igvav-~~~~~~~~~~~~~gL~vpvi~~a~~~s~~l~~~~~~~i~~~~~~l~~~ar~~g-~L~~-~~~  262 (431)
                      +++.|+++++||||+|| ++     +    +||++||++. ..++  +     .+|++++++++++|| +| +|++ +|+
T Consensus        78 ~~~~i~~~~~v~igiAV~~t-----~----~GL~~pvi~~-~~~~--l-----~~i~~~~~~l~~~ar-~~~kL~~~~~~  139 (219)
T 1q23_A           78 KDGELVIWDSVHPCYTVFHE-----Q----TETFSSLWSE-YHDD--F-----RQFLHIYSQDVACYG-ENLAYFPKGFI  139 (219)
T ss_dssp             ETTEEEEESCCEEEEEEEET-----T----TTEEEEEECC-CCSS--H-----HHHHHHHHHHHHHHT-TCCSSSTTCCC
T ss_pred             ECCEEEEecccCeEEEEEec-----C----CcEEEEEEec-CCCC--H-----HHHHHHHHHHHHHHH-ccCCCCCcccc
Confidence            99999999999999999 99     8    9999999996 5689  9     999999999999999 88 6976 899


Q ss_pred             CCceEEEecCCCCCccceeeccCCCc---ceeeeccceeEEEeeeCCeEEEeeeeeeeeeeeeeeeehHHHHHHHHHHHh
Q psy14345        263 DGGTFTISNGGVFGSLLGTPIINPPQ---SAILGMHGTFERPVAIKGQVVVKPMMYVALTYDHRLIDGREAVLFLQKEAH  339 (431)
Q Consensus       263 ~ggTftiSn~G~~G~~~~~pii~ppq---~ail~vG~i~~~pv~~~g~~~~~~~m~lslt~DHRvIDg~~a~~fl~~lk~  339 (431)
                       ||||||||+||+|.+.+.+.+++|.   ++|+++|+++++    +|    +++|++++++|||+|||..+++|++.+++
T Consensus       140 -ggtftISnlG~~~ft~i~~~~~~~~~~~~pIi~~G~~~~~----~~----r~~m~lsls~DHRvvDG~~aa~Fl~~lk~  210 (219)
T 1q23_A          140 -ENMFFVSANPWVSFTSFDLNVANMDNFFAPVFTMGKYYTQ----GD----KVLMPLAIQVHHAVCDGFHVGRMLNELQQ  210 (219)
T ss_dssp             -SSEEEEEECTTCCCSEEEEEESCCTTCCSCEEEECCCEEE----TT----EEEEEEEEEEETTTCCHHHHHHHHHHHHH
T ss_pred             -CCEEEEEcCccccccccccCCCCCccceeEEEecccEEEE----CC----cEEEEEEEEEEchhhChHHHHHHHHHHHH
Confidence             9999999999987666665555442   599999999876    44    68999999999999999999999999998


Q ss_pred             Hhhh
Q psy14345        340 LEAF  343 (431)
Q Consensus       340 l~~~  343 (431)
                      +.+.
T Consensus       211 ~le~  214 (219)
T 1q23_A          211 YCDE  214 (219)
T ss_dssp             HHHH
T ss_pred             HHhC
Confidence            6553

>3cla_A Type III chloramphenicol acetyltransferase; transferase (acyltransferase); HET: CLM; 1.75A {Escherichia coli} SCOP: c.43.1.1 PDB: 1cla_A* 2cla_A 4cla_A* 1cia_A 1qca_A*

Probab=100.00  E-value=7.6e-40  Score=308.59  Aligned_cols=181  Identities=12%  Similarity=0.057  Sum_probs=163.7

Q ss_pred             ccceEEEEeeeccchHHHHHHHHHHHHHHhhcCCCCChhHHHHHHHHHHHhhCCccceeeeCCeeEecCcccEEEEE-ee
Q psy14345        126 NVNAMLTTFNEIDMSAIIEFRKAHLEAFQKKYGLKLGFMSPFIKASAYALQDQPVVNAVIEGTDIVYRDYVDISVGM-GR  204 (431)
Q Consensus       126 ~~iP~~t~~~evD~t~l~~~r~~l~~~~~~~~g~k~t~~~~~ikA~a~Al~~~P~~N~~~~~~~i~~~~~v~igvav-~~  204 (431)
                      .++||+|++.+||+|+|+++|++          .++||+++++||++.||++||++|++|+++.|++++++|||+|| ++
T Consensus        23 ~~~P~~~~~~evDvt~l~~~rk~----------~~ls~~~~~ikAv~~Al~~~P~~Na~~~~~~i~~~~~v~igiAVf~t   92 (213)
T 3cla_A           23 RLPCGFSLTSKIDITTLKKSLDD----------SAYKFYPVMIYLIAQAVNQFDELRMAIKDDELIVWDSVDPQFTVFHQ   92 (213)
T ss_dssp             TSCCEEEEEEEEECHHHHHHHHT----------SSCCHHHHHHHHHHHHHTTCGGGSEEEETTEEEEESCCEEEEEEEET
T ss_pred             CCCceEEEEEEEEHHHHHHHHHH----------hCCCHHHHHHHHHHHHHhhCHHhhEEEECCEEEEEeccceeEEEEeC
Confidence            47999999999999999999864          47999999999999999999999999999999999999999999 99


Q ss_pred             cCCCCCCccCCcEEEEeecCCCccccccccCChhHHHHHHHHHHhhhhhcC-CCCc-ccCCCceEEEecCCCCCccceee
Q psy14345        205 NESNLPRWCFNGLLSGVLVLTEHLNGKYCVSSRPSYERHTTGWACYDRLNW-NLAI-EDSDGGTFTISNGGVFGSLLGTP  282 (431)
Q Consensus       205 ~~~~~~~~~~~gL~vpvi~~a~~~s~~l~~~~~~~i~~~~~~l~~~ar~~g-~L~~-~~~~ggTftiSn~G~~G~~~~~p  282 (431)
                           +    +||++||+++ +.++  +     .+|++++++++++|| +| +|++ +|++||||||||+||++.+.++.
T Consensus        93 -----~----~GL~vpvi~~-~~~~--~-----~~i~~~~~~l~~~ar-~~~kL~~~~~~~ggtftISnlg~~~ft~i~~  154 (213)
T 3cla_A           93 -----E----TETFSALSCP-YSSD--I-----DQFMVNYLSVMERYK-SDTKLFPQGVTPENHLNISALPWVNFDSFNL  154 (213)
T ss_dssp             -----T----TTEEEEEECC-CCSS--H-----HHHHHHHHHHHHHHT-TCCSSSTTSSCCSSEEEEEEETTCCCSCCCC
T ss_pred             -----C----CceEEEEEec-CCCC--H-----HHHHHHHHHHHHHHh-hcCCCCCCCCCCCCEEEEEcCCCCCcccccc
Confidence                 8    9999999987 5689  9     999999999999999 85 9988 89999999999999998877754


Q ss_pred             ccCCC---cceeeeccceeEEEeeeCCeEEEeeeeeeeeeeeeeeeehHHHHHHHHHHHhHhh
Q psy14345        283 IINPP---QSAILGMHGTFERPVAIKGQVVVKPMMYVALTYDHRLIDGREAVLFLQKEAHLEA  342 (431)
Q Consensus       283 ii~pp---q~ail~vG~i~~~pv~~~g~~~~~~~m~lslt~DHRvIDg~~a~~fl~~lk~l~~  342 (431)
                      .++.+   ..+|+++|+++++    +|    +++|++++++|||+|||..+++|++.++++.+
T Consensus       155 ~~~~g~~~~~PIi~~G~~~~~----~~----~~~m~lsls~DHRvvDG~~aa~Fl~~lk~~le  209 (213)
T 3cla_A          155 NVANFTDYFAPIITMAKYQQE----GD----RLLLPLSVQVHHAVCDGFHVARFINRLQELCN  209 (213)
T ss_dssp             CCSCCTTCCSCEEEEECCEEE----TT----EEEEEEEEEEETTTCCHHHHHHHHHHHHHHHT
T ss_pred             cCCCCCcccccEEEeeEEEEE----CC----eEEEEEEEEEcccccChHHHHHHHHHHHHHHH
Confidence            44444   2489999999876    44    68999999999999999999999999997644

>2i9d_A Chloramphenicol acetyltransferase; structural genomics, PSI- protein structure initiative, midwest center for structural genomics; 2.30A {Bacteroides thetaiotaomicron}

Probab=100.00  E-value=2.6e-38  Score=298.69  Aligned_cols=179  Identities=19%  Similarity=0.180  Sum_probs=162.7

Q ss_pred             ccceEEEEeeeccchHHHHHHHHHHHHHHhhcCCCCChhHHHHHHHHHHHhhCCccceeee-CCeeEecCcccEEEEE-e
Q psy14345        126 NVNAMLTTFNEIDMSAIIEFRKAHLEAFQKKYGLKLGFMSPFIKASAYALQDQPVVNAVIE-GTDIVYRDYVDISVGM-G  203 (431)
Q Consensus       126 ~~iP~~t~~~evD~t~l~~~r~~l~~~~~~~~g~k~t~~~~~ikA~a~Al~~~P~~N~~~~-~~~i~~~~~v~igvav-~  203 (431)
                      .++||+|++.+||+|+|+++|++          .++||+++++||++.||++||++|++|+ +++|++++++|||+|| +
T Consensus        25 ~~~P~~~~~~evDvt~l~~~rk~----------~~ls~~~~~ikAv~~Al~~~P~~n~~~~~~~~i~~~~~i~igvAVf~   94 (217)
T 2i9d_A           25 FQNPQLSITSEVECGGARQRAKA----------AGQSFFLHYLYAVLRAANEIPEFRYRIDPDGRVVLYDTIDMLSPIKI   94 (217)
T ss_dssp             CSBCEEEEEEEEECHHHHHHHHH----------TTCCHHHHHHHHHHHHHHHSGGGGEEECTTSCEEEESCCEEEEEEEC
T ss_pred             CCCceEEEEEEEEhHHHHHHHHH----------cCCCHHHHHHHHHHHHHHhCHHhheEEcCCCEEEEecccCeEEEEEe
Confidence            57999999999999999999865          3799999999999999999999999999 8999999999999999 9


Q ss_pred             ecCCCCCCccCCcEEEEeecCCCccccccccCChhHHHHHHHHHHhhhhhc-CCCCcc------cCCCceEEEecCCCCC
Q psy14345        204 RNESNLPRWCFNGLLSGVLVLTEHLNGKYCVSSRPSYERHTTGWACYDRLN-WNLAIE------DSDGGTFTISNGGVFG  276 (431)
Q Consensus       204 ~~~~~~~~~~~~gL~vpvi~~a~~~s~~l~~~~~~~i~~~~~~l~~~ar~~-g~L~~~------~~~ggTftiSn~G~~G  276 (431)
                      +     +    +||++||+. ...++  +     .+|++++++++++|| + |+|+++      |++||||||||+||++
T Consensus        95 t-----~----~GL~~pv~~-~~~~~--~-----~~i~~~~~~l~~~ar-~~~kL~~~~~~~~~e~~ggtftISnlg~~~  156 (217)
T 2i9d_A           95 K-----E----NGKFFTTRF-PYHND--F-----DTFYQEARLIIDAIP-EDGDPYAAENEEVADGDYGLILLSATPDLY  156 (217)
T ss_dssp             S-----T----TSCEEEEEE-CCCSS--H-----HHHHHHHHHHHHHCC-SSCCTTHHHHHHHHHTCCCEEEEEECTTCC
T ss_pred             c-----C----CceEeEEEe-cCCCC--H-----HHHHHHHHHHHHHHH-hcCCCCCccccccccCCCCEEEEEcCCccc
Confidence            9     8    999999986 45788  9     999999999999999 8 699995      9999999999999999


Q ss_pred             ccceeeccCCC---cceeeeccceeEEEeeeCCeEEEeeeeeeeeeeeeeeeehHHHHHHHHHHHhH
Q psy14345        277 SLLGTPIINPP---QSAILGMHGTFERPVAIKGQVVVKPMMYVALTYDHRLIDGREAVLFLQKEAHL  340 (431)
Q Consensus       277 ~~~~~pii~pp---q~ail~vG~i~~~pv~~~g~~~~~~~m~lslt~DHRvIDg~~a~~fl~~lk~l  340 (431)
                      .+.++..++++   ..+|+++|++.++    +|    +++|++++++|||+|||..+++|++.++++
T Consensus       157 ft~i~~~~~~g~~~~~PIi~~Gk~~~~----~~----r~~m~lsls~DHRvvDG~~aa~Fl~~lk~~  215 (217)
T 2i9d_A          157 FTSITGTQEKRSGNNYPLLNAGKAIIR----EG----RLVMPIAMTIHHGFIDGHHLSLFYKKVEDF  215 (217)
T ss_dssp             CSEECCCBCSTTCCSSCEEEECCCEEE----TT----EEEEEEEEEEETTTCCHHHHHHHHHHHHHH
T ss_pred             cceeecCCCCCccceEEEEecceEEEE----CC----cEEEEEEEEecchhhChHHHHHHHHHHHHH
Confidence            88876655544   2589999999876    44    689999999999999999999999999864

>3mae_A 2-oxoisovalerate dehydrogenase E2 component, dihydrolipamide acetyltransferase; 2-oxoacid dehydrogenases acyltransferase; 2.50A {Listeria monocytogenes}

Probab=99.88  E-value=1.4e-22  Score=195.53  Aligned_cols=105  Identities=33%  Similarity=0.499  Sum_probs=97.5

Q ss_pred             eehHHHHHHHHHHHhHhhhhhhcccccCCcchHHHHHHHHhhcCCccceeeeCCeeEEcCCcceEEEEecCCCeeeceec
Q psy14345        325 IDGREAVLFLQKEAHLEAFQKKYGLKLGFMSPFIKASAYALQDQPVVNAVIEGTDIVYRDYVDISVAVATPKGLVVPVIR  404 (431)
Q Consensus       325 IDg~~a~~fl~~lk~l~~~~~~~~~klt~~~~~~ka~~~aL~~~P~~Na~~~~~~i~~~~~vnigvAV~~~~GL~vPvi~  404 (431)
                      ||.+.+.++++++++.  +.++.|.|+|+++|++||+++||++||++|++|+++.|+++++||||+||++++||+|||||
T Consensus        50 vDvt~l~~~r~~~k~~--~~~~~g~kls~~~~iikAva~AL~~~P~~Na~~~~~~i~~~~~vnigiAV~t~~GL~vPvi~  127 (256)
T 3mae_A           50 VDATGLVRYRNAVKDS--FKKEEGYSLTYFAFFIKAVAQALKEFPQLNSTWAGDKIIEHANINISIAIAAGDLLYVPVIK  127 (256)
T ss_dssp             EECHHHHHHHHHHHHH--HHHHHSSCCCHHHHHHHHHHHHHHHCTTTSEEEETTEEEECSSCCEEECCCCTTSCCCCEET
T ss_pred             EEHHHHHHHHHHHHhh--hhhhcCCCccHHHHHHHHHHHHHHhCHHhhhEEecCEEEEcCcEEEEeEEEcCCceEEEEEc
Confidence            7788999999888742  23345889999999999999999999999999999999999999999999999999999999


Q ss_pred             CcccCCHHHHHHHHHHHHHHHHcCCCC
Q psy14345        405 NVEAMNFADIELTIAALGEKARTGKYT  431 (431)
Q Consensus       405 ~a~~~~l~~ia~~~~~l~~~ar~g~L~  431 (431)
                      |+|++|+.||++++++|++|||+|+|+
T Consensus       128 ~ad~~sl~ei~~~i~~l~~~Ar~gkL~  154 (256)
T 3mae_A          128 NADEKSIKGIAREISELAGKARNGKLS  154 (256)
T ss_dssp             TGGGSCHHHHHHHHHHHHHHHHTTCCC
T ss_pred             CCCCCCHHHHHHHHHHHHHHHhcCCCC
Confidence            999999999999999999999999985

>1scz_A E2, dihydrolipoamide succinyltransferase; COA-dependent acyltransferase, CAT-like, alpha and beta (2 L mixed beta-sheeet of 6 strands; 2.20A {Escherichia coli} SCOP: c.43.1.1 PDB: 1e2o_A 1c4t_A

Probab=99.87  E-value=5e-22  Score=189.31  Aligned_cols=113  Identities=42%  Similarity=0.696  Sum_probs=101.0

Q ss_pred             eeeeeeeeeeeeeeehHHHHHHHHHHHhHhhhhhhcccccCCcchHHHHHHHHhhcCCccceeeeCCeeEEcCCcceEEE
Q psy14345        312 PMMYVALTYDHRLIDGREAVLFLQKEAHLEAFQKKYGLKLGFMSPFIKASAYALQDQPVVNAVIEGTDIVYRDYVDISVA  391 (431)
Q Consensus       312 ~~m~lslt~DHRvIDg~~a~~fl~~lk~l~~~~~~~~~klt~~~~~~ka~~~aL~~~P~~Na~~~~~~i~~~~~vnigvA  391 (431)
                      |+++++..     +|.+.+.++++++++.  +.++.|.|+|+++|++||++.||++||++|++|+++.|++++++|||+|
T Consensus        28 P~~~~~~e-----vdvt~l~~~r~~~k~~--~~~~~g~kls~~~~~ikA~~~Al~~~P~~Na~~~~~~i~~~~~v~igiA  100 (233)
T 1scz_A           28 AMLTTFNE-----VNMKPIMDLRKQYGEA--FEKRHGIRLGFMSFYVKAVVEALKRYPEVNASIDGDDVVYHNYFDVSMA  100 (233)
T ss_dssp             CEEEEEEE-----EECHHHHHHHHHHHHH--HHHHHSSCCCSHHHHHHHHHHHHHHCTTTTCEEETTEEECCSSCCEEEC
T ss_pred             CEEEEEEE-----EEcHHHHHHHHHHHhh--hhhhcCCcccHHHHHHHHHHHHHHhChHhhEEEeCCEEEEeCceeEEEE
Confidence            45555444     6778899998887742  2334588999999999999999999999999999999999999999999


Q ss_pred             EecCCCeeeceecCcccCCHHHHHHHHHHHHHHHHcCCCC
Q psy14345        392 VATPKGLVVPVIRNVEAMNFADIELTIAALGEKARTGKYT  431 (431)
Q Consensus       392 V~~~~GL~vPvi~~a~~~~l~~ia~~~~~l~~~ar~g~L~  431 (431)
                      |++++||+||||+||+++|+.||++++++|+++||+|+|+
T Consensus       101 V~~~~GL~vPvi~~a~~~~l~~i~~~~~~l~~~ar~~kL~  140 (233)
T 1scz_A          101 VSTPRGLVTPVLRDVDTLGMADIEKKIKELAVKGRDGKLT  140 (233)
T ss_dssp             EEETTEEECCEETTGGGCCHHHHHHHHHHHHHHTTTTCCC
T ss_pred             EEcCCcEEEEEEcCCCCCCHHHHHHHHHHHHHHHHcCCCC
Confidence            9999999999999999999999999999999999999985

>3l60_A Branched-chain alpha-keto acid dehydrogenase; structural genomics, PSI-2, protein structure initiative; 2.00A {Mycobacterium tuberculosis} SCOP: c.43.1.0

Probab=99.86  E-value=9.5e-22  Score=188.99  Aligned_cols=100  Identities=19%  Similarity=0.251  Sum_probs=92.8

Q ss_pred             eehHHHHHHHHHHHhHhhhhhhcccccCCcchHHHHHHHHhhcCCccceeeeC----CeeEEcCCcceEEEEecCCCeee
Q psy14345        325 IDGREAVLFLQKEAHLEAFQKKYGLKLGFMSPFIKASAYALQDQPVVNAVIEG----TDIVYRDYVDISVAVATPKGLVV  400 (431)
Q Consensus       325 IDg~~a~~fl~~lk~l~~~~~~~~~klt~~~~~~ka~~~aL~~~P~~Na~~~~----~~i~~~~~vnigvAV~~~~GL~v  400 (431)
                      ||.+.+.++++++++       .|.|+|+++|++||+++||++||++|++|++    +.|+++++||||+||++++||+|
T Consensus        46 vDvt~l~~~r~~~k~-------~~~kls~~~~iikAva~AL~~~P~~Na~~~~~~~~~~i~~~~~vnigvAV~t~~GL~v  118 (250)
T 3l60_A           46 VICAELLRLRDRFVS-------AAPEITPFALTLRLLVIALKHNVILNSTWVDSGEGPQVHVHRGVHLGFGAATERGLLV  118 (250)
T ss_dssp             EECHHHHHHHHHHTT-------TCTTCCHHHHHHHHHHHHHHHCGGGSEEEECTTTSCEEEECSSCCEEECEEETTEEEC
T ss_pred             EEHHHHHHHHHHHhh-------cCCCCCHHHHHHHHHHHHHHhCHHhhEEEeccCCCCeEEEcCceeEEEEEEcCCCeEE
Confidence            677888888877752       3679999999999999999999999999975    49999999999999999999999


Q ss_pred             ceecCcccCCHHHHHHHHHHHHHHHHcCCCC
Q psy14345        401 PVIRNVEAMNFADIELTIAALGEKARTGKYT  431 (431)
Q Consensus       401 Pvi~~a~~~~l~~ia~~~~~l~~~ar~g~L~  431 (431)
                      |||+|++++|+.||++++++|++|||+|+|+
T Consensus       119 Pvi~~ad~~sl~ei~~~i~~l~~~Ar~gkL~  149 (250)
T 3l60_A          119 PVVTDAQDKNTRELASRVAELITGAREGTLT  149 (250)
T ss_dssp             CEETTGGGCCHHHHHHHHHHHHHHHHHTCCC
T ss_pred             eEEecCCCCCHHHHHHHHHHHHHHHHcCCCC
Confidence            9999999999999999999999999999985

>3rqc_A Probable lipoamide acyltransferase; alpha beta fold; 4.01A {Thermoplasma acidophilum dsm 1728}

Probab=99.86  E-value=8.8e-22  Score=186.58  Aligned_cols=108  Identities=25%  Similarity=0.369  Sum_probs=97.3

Q ss_pred             eeeeeeeeeeeeeeehHHHHHHHHHHHhHhhhhhhcccccCCcchHHHHHHHHhhcCCccceeeeCC--eeEEcCCcceE
Q psy14345        312 PMMYVALTYDHRLIDGREAVLFLQKEAHLEAFQKKYGLKLGFMSPFIKASAYALQDQPVVNAVIEGT--DIVYRDYVDIS  389 (431)
Q Consensus       312 ~~m~lslt~DHRvIDg~~a~~fl~~lk~l~~~~~~~~~klt~~~~~~ka~~~aL~~~P~~Na~~~~~--~i~~~~~vnig  389 (431)
                      |+++++..     +|.+.+.++++++++       .|.|+|+++|++||+++||++||++|++|+++  .|++++++|||
T Consensus        30 P~~~~~~e-----vDvt~l~~~r~~~k~-------~g~kls~~~~~ikA~~~Al~~~P~~N~~~~~~~~~i~~~~~v~ig   97 (224)
T 3rqc_A           30 PHFTVMEE-----VDVTSMVSILDSAKA-------RNRKVTVTGFLARIVPSILKQYPYLNAIYDETRRVYILKKYYNIG   97 (224)
T ss_dssp             CEEEEEEC-----CBTHHHHHHHHHHTT-------TTCCCCHHHHHHHHHHHHHHHSGGGSBBCCSSTTCCCEECSCCEE
T ss_pred             CeEEEEEE-----EEHHHHHHHHHHHhh-------cCCCCCHHHHHHHHHHHHHHhCHHhheEEeCCCCEEEEeCccceE
Confidence            44444444     677888888887763       27899999999999999999999999999877  99999999999


Q ss_pred             EEEecCCCeeeceecCcccCCHHHHHHHHHHHHHHHHcCCCC
Q psy14345        390 VAVATPKGLVVPVIRNVEAMNFADIELTIAALGEKARTGKYT  431 (431)
Q Consensus       390 vAV~~~~GL~vPvi~~a~~~~l~~ia~~~~~l~~~ar~g~L~  431 (431)
                      +||++++||+||||+|+|++|+.||++++++|+++||+|+|+
T Consensus        98 iAV~~~~GL~vPvi~~a~~~sl~~i~~~~~~l~~~ar~~~L~  139 (224)
T 3rqc_A           98 IAVDTPDGLNVFVIKDADRKSMVEISAEISDKASRARENKLQ  139 (224)
T ss_dssp             EEEECSSCEEEEEESCGGGSCHHHHHHHHHHHHHHHTTTCCC
T ss_pred             eEEEcCCceEEeEECCCCCCCHHHHHHHHHHHHHHHHcCCCC
Confidence            999999999999999999999999999999999999999985

>1dpb_A Dihydrolipoyl-transacetylase; dihydrolipoamide acetyltransferase; 2.50A {Azotobacter vinelandii} SCOP: c.43.1.1 PDB: 1dpd_A 1eaa_A 1eab_A* 1eac_A* 1ead_A* 1eae_A* 1eaf_A 1dpc_A

Probab=99.85  E-value=2.7e-21  Score=185.34  Aligned_cols=104  Identities=36%  Similarity=0.536  Sum_probs=95.4

Q ss_pred             eehHHHHHHHHHHHhHhhhhhhcccccCCcchHHHHHHHHhhcCCccceeeeC--CeeEEcCCcceEEEEecCCCeeece
Q psy14345        325 IDGREAVLFLQKEAHLEAFQKKYGLKLGFMSPFIKASAYALQDQPVVNAVIEG--TDIVYRDYVDISVAVATPKGLVVPV  402 (431)
Q Consensus       325 IDg~~a~~fl~~lk~l~~~~~~~~~klt~~~~~~ka~~~aL~~~P~~Na~~~~--~~i~~~~~vnigvAV~~~~GL~vPv  402 (431)
                      +|.+.+.++++++++..   ++.|.|+|+++|++||++.||++||++|++|++  +.|+++++||||+||++++||+|||
T Consensus        47 vDvt~l~~~r~~~k~~~---~~~g~kls~~~~~ikA~~~Al~~~P~~Na~~~~~~~~i~~~~~v~igiAV~t~~GL~vPv  123 (243)
T 1dpb_A           47 ADITELEAFRVAQKAVA---EKAGVKLTVLPLLLKACAYLLKELPDFNSSLAPSGQALIRKKYVHIGFAVDTPDGLLVPV  123 (243)
T ss_dssp             EECHHHHHHHHHTHHHH---HHTTCCCCSHHHHHHHHHHHHHHSGGGGEEECTTSSCEEECSSCCEEECEEETTEEECCE
T ss_pred             EEhHHHHHHHHHHhhhh---hhccCCCChHHHHHHHHHHHHHhChHhhEEEecCCCeEEEeCceeEEEEEECCCcEEEEE
Confidence            67788999988877532   245889999999999999999999999999985  4999999999999999999999999


Q ss_pred             ecCcccCCHHHHHHHHHHHHHHHHcCCCC
Q psy14345        403 IRNVEAMNFADIELTIAALGEKARTGKYT  431 (431)
Q Consensus       403 i~~a~~~~l~~ia~~~~~l~~~ar~g~L~  431 (431)
                      |+|+|++|+.||++++++|++|||+|+|+
T Consensus       124 i~~a~~~sl~ei~~~~~~l~~~ar~~kL~  152 (243)
T 1dpb_A          124 IRNVDQKSLLQLAAEAAELAEKARSKKLG  152 (243)
T ss_dssp             ETTGGGSCHHHHHHHHHHHHHHHHTTCCC
T ss_pred             eCCCCCCCHHHHHHHHHHHHHHHHcCCCC
Confidence            99999999999999999999999999985

>2ii3_A Lipoamide acyltransferase component of branched-C alpha-keto acid dehydrogenase complex...; cubic core, HOMO trimer, oxidized COA-bound form; HET: CAO; 2.17A {Bos taurus} PDB: 2ihw_A* 2ii4_A* 2ii5_A*

Probab=99.85  E-value=3.5e-21  Score=186.36  Aligned_cols=104  Identities=28%  Similarity=0.489  Sum_probs=95.9

Q ss_pred             eehHHHHHHHHHHHhHhhhhhhcccccCCcchHHHHHHHHhhcCCccceeeeC--CeeEEcCCcceEEEEecCCCeeece
Q psy14345        325 IDGREAVLFLQKEAHLEAFQKKYGLKLGFMSPFIKASAYALQDQPVVNAVIEG--TDIVYRDYVDISVAVATPKGLVVPV  402 (431)
Q Consensus       325 IDg~~a~~fl~~lk~l~~~~~~~~~klt~~~~~~ka~~~aL~~~P~~Na~~~~--~~i~~~~~vnigvAV~~~~GL~vPv  402 (431)
                      +|.+.+.++++++++.   .++.|.|+|+++|++||++.||++||++|++|++  +.|++++++|||+||++++||+|||
T Consensus        62 vDvt~l~~~r~~~k~~---~~~~g~kls~~~~~ikAva~Al~~~P~~Na~~~~~~~~i~~~~~v~igiAV~t~~GL~vPv  138 (262)
T 2ii3_A           62 VDLTELVKLREELKPI---AFARGIKLSFMPFFLKAASLGLLQFPILNASVDENCQNITYKASHNIGIAMDTEQGLIVPN  138 (262)
T ss_dssp             EECHHHHHHHHHHHHH---HHHTTCCCCSHHHHHHHHHHHHHHCGGGSEEECTTSCEEEECSSCCEEECEEETTEEECCE
T ss_pred             EEhHHHHHHHHHHhhh---hhhccCCccHHHHHHHHHHHHHHhChHhhEEEeCCCCEEEEecccceEEEEEcCCCEEEEE
Confidence            7889999998888752   2345889999999999999999999999999975  4899999999999999999999999


Q ss_pred             ecCcccCCHHHHHHHHHHHHHHHHcCCCC
Q psy14345        403 IRNVEAMNFADIELTIAALGEKARTGKYT  431 (431)
Q Consensus       403 i~~a~~~~l~~ia~~~~~l~~~ar~g~L~  431 (431)
                      |+||+++|+.||++++++|+++||+|+|+
T Consensus       139 i~~a~~~sl~ei~~~~~~l~~~ar~~kL~  167 (262)
T 2ii3_A          139 VKNVQIRSIFEIATELNRLQKLGSAGQLS  167 (262)
T ss_dssp             ETTGGGCCHHHHHHHHHHHHHHHHHTCCC
T ss_pred             ecCCCCCCHHHHHHHHHHHHHHHHhCCCC
Confidence            99999999999999999999999999985

>3b8k_A PDCE2;, dihydrolipoyllysine-residue acetyltransferase; central beta-sheet surrounded by five alpha-helices; 8.80A {Homo sapiens}

Probab=99.83  E-value=5.7e-21  Score=182.73  Aligned_cols=103  Identities=31%  Similarity=0.365  Sum_probs=94.5

Q ss_pred             eehHHHHHHHHHHHhHhhhhhhcccccCCcchHHHHHHHHhhcCCccceeeeCCeeEEcCCcceEEEEecCCCeeeceec
Q psy14345        325 IDGREAVLFLQKEAHLEAFQKKYGLKLGFMSPFIKASAYALQDQPVVNAVIEGTDIVYRDYVDISVAVATPKGLVVPVIR  404 (431)
Q Consensus       325 IDg~~a~~fl~~lk~l~~~~~~~~~klt~~~~~~ka~~~aL~~~P~~Na~~~~~~i~~~~~vnigvAV~~~~GL~vPvi~  404 (431)
                      +|.+.+.++++++++..   + .+.|+|+++|++||+++||++||++|++|+++.|+++++||||+||++++||++|||+
T Consensus        44 vDvt~l~~~r~~~k~~~---~-~~~kls~~~~~ikAv~~Al~~~P~~Na~~~~~~i~~~~~v~igvAV~~~~GL~vPvi~  119 (239)
T 3b8k_A           44 VNMGEVLLVRKELNKIL---E-GRSKISVNDFIIKASALACLKVPEANSSWMDTVIRQNHVVDVSVAVSTPAGLITPIVF  119 (239)
T ss_dssp             ECCTTHHHHHHHTHHHH---T-TSSCCCHHHHHHHHHHHHHHHCCCSCTTSCCCSSSCSCCCCEEECEECSSCEECCEEC
T ss_pred             EEcHHHHHHHHHHHhhh---h-ccCCCCHHHHHHHHHHHHHHhChHhhEEEECCEEEEeCceeEEEEEEcCCcEEEEEEc
Confidence            67788889988877421   1 1259999999999999999999999999999999999999999999999999999999


Q ss_pred             CcccCCHHHHHHHHHHHHHHHHcCCCC
Q psy14345        405 NVEAMNFADIELTIAALGEKARTGKYT  431 (431)
Q Consensus       405 ~a~~~~l~~ia~~~~~l~~~ar~g~L~  431 (431)
                      |+|++|+.||++++++|+++||+|+|+
T Consensus       120 ~a~~~~l~~i~~~~~~l~~~ar~~kL~  146 (239)
T 3b8k_A          120 NAHIKGVETIANDVVSLATKAREGKLQ  146 (239)
T ss_dssp             CSSCCCHHHHHHHHHHHHHHHHTTCCC
T ss_pred             CCCCCCHHHHHHHHHHHHHHHHcCCCC
Confidence            999999999999999999999999985

>3cla_A Type III chloramphenicol acetyltransferase; transferase (acyltransferase); HET: CLM; 1.75A {Escherichia coli} SCOP: c.43.1.1 PDB: 1cla_A* 2cla_A 4cla_A* 1cia_A 1qca_A*

Probab=99.77  E-value=1.5e-18  Score=163.24  Aligned_cols=103  Identities=13%  Similarity=0.069  Sum_probs=90.1

Q ss_pred             eeeeeeeeeeeeeeeehHHHHHHHHHHHhHhhhhhhcccccCCcchHHHHHHHHhhcCCccceeeeCCeeEEcCCcceEE
Q psy14345        311 KPMMYVALTYDHRLIDGREAVLFLQKEAHLEAFQKKYGLKLGFMSPFIKASAYALQDQPVVNAVIEGTDIVYRDYVDISV  390 (431)
Q Consensus       311 ~~~m~lslt~DHRvIDg~~a~~fl~~lk~l~~~~~~~~~klt~~~~~~ka~~~aL~~~P~~Na~~~~~~i~~~~~vnigv  390 (431)
                      .|+++++..+     |.+.+.+++++            .++|++++++||++.||++||++|++|+++.|+++++||||+
T Consensus        25 ~P~~~~~~ev-----Dvt~l~~~rk~------------~~ls~~~~~ikAv~~Al~~~P~~Na~~~~~~i~~~~~v~igi   87 (213)
T 3cla_A           25 PCGFSLTSKI-----DITTLKKSLDD------------SAYKFYPVMIYLIAQAVNQFDELRMAIKDDELIVWDSVDPQF   87 (213)
T ss_dssp             CCEEEEEEEE-----ECHHHHHHHHT------------SSCCHHHHHHHHHHHHHTTCGGGSEEEETTEEEEESCCEEEE
T ss_pred             CceEEEEEEE-----EHHHHHHHHHH------------hCCCHHHHHHHHHHHHHhhCHHhhEEEECCEEEEEeccceeE
Confidence            4667776664     55666665421            389999999999999999999999999999999999999999


Q ss_pred             EE-ecCCCeeeceecCcccCCHHHHHHHHHHHHHHHHcC-CCC
Q psy14345        391 AV-ATPKGLVVPVIRNVEAMNFADIELTIAALGEKARTG-KYT  431 (431)
Q Consensus       391 AV-~~~~GL~vPvi~~a~~~~l~~ia~~~~~l~~~ar~g-~L~  431 (431)
                      || ++++||++||+++ +.+++.+|++++++|++|||+| +|+
T Consensus        88 AVf~t~~GL~vpvi~~-~~~~~~~i~~~~~~l~~~ar~~~kL~  129 (213)
T 3cla_A           88 TVFHQETETFSALSCP-YSSDIDQFMVNYLSVMERYKSDTKLF  129 (213)
T ss_dssp             EEEETTTTEEEEEECC-CCSSHHHHHHHHHHHHHHHTTCCSSS
T ss_pred             EEEeCCCceEEEEEec-CCCCHHHHHHHHHHHHHHHhhcCCCC
Confidence            99 9999999999987 5699999999999999999996 884

>3dva_I Dihydrolipoyllysine-residue acetyltransferase component of pyruvate dehydrogenase...; oxidoreductase, multienzyme complex; HET: TPW; 2.35A {Bacillus stearothermophilus} PDB: 3dv0_I* 3duf_I* 1b5s_A 1lab_A 1lac_A 1w3d_A

Probab=99.76  E-value=3.3e-20  Score=191.26  Aligned_cols=104  Identities=34%  Similarity=0.524  Sum_probs=0.0

Q ss_pred             eehHHHHHHHHHHHhHhhhhhhcccccCCcchHHHHHHHHhhcCCccceeeeC--CeeEEcCCcceEEEEecCCCeeece
Q psy14345        325 IDGREAVLFLQKEAHLEAFQKKYGLKLGFMSPFIKASAYALQDQPVVNAVIEG--TDIVYRDYVDISVAVATPKGLVVPV  402 (431)
Q Consensus       325 IDg~~a~~fl~~lk~l~~~~~~~~~klt~~~~~~ka~~~aL~~~P~~Na~~~~--~~i~~~~~vnigvAV~~~~GL~vPv  402 (431)
                      ||.+.+..|++++++.   .++.|.|+|+++|++||+++||++||++|++|++  +.|++++++|||+||++++||+|||
T Consensus       230 vDvt~l~~~rk~~~~~---~~~~g~kls~~~~~ikAva~Al~~~P~~Na~~~~~~~~i~~~~~v~igiAV~t~~GL~vPv  306 (428)
T 3dva_I          230 ADVTKLVAHRKKFKAI---AAEKGIKLTFLPYVVKALVSALREYPVLNTSIDDETEEIIQKHYYNIGIAADTDRGLLVPV  306 (428)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             EeHHHHHHHHHHhhhh---HhhcCCCcCHHHHHHHHHHHHHHhCHHhhheEecCCCeEEEcCccCeEEEEEcCCceEEee
Confidence            6778888888887743   2346889999999999999999999999999987  8999999999999999999999999


Q ss_pred             ecCcccCCHHHHHHHHHHHHHHHHcCCCC
Q psy14345        403 IRNVEAMNFADIELTIAALGEKARTGKYT  431 (431)
Q Consensus       403 i~~a~~~~l~~ia~~~~~l~~~ar~g~L~  431 (431)
                      |||+++++|.||++++++|++|+|+|+|+
T Consensus       307 i~~a~~~sl~eia~~~~~l~~~ar~gkL~  335 (428)
T 3dva_I          307 IKHADRKPIFALAQEINELAEKARDGKLT  335 (428)
T ss_dssp             -----------------------------
T ss_pred             eccCCCCCHHHHHHHHHHHHHHHHcCCCC
Confidence            99999999999999999999999999985

>1q23_A Chloramphenicol acetyltransferase; CAT I, trimer, fusidic acid; HET: FUA; 2.18A {Escherichia coli} SCOP: c.43.1.1 PDB: 1noc_B 1pd5_A* 3u9b_A 3u9f_A*

Probab=99.76  E-value=2.8e-18  Score=161.99  Aligned_cols=103  Identities=14%  Similarity=0.095  Sum_probs=90.2

Q ss_pred             eeeeeeeeeeeeeeeehHHHHHHHHHHHhHhhhhhhcccccCCcchHHHHHHHHhhcCCccceeeeCCeeEEcCCcceEE
Q psy14345        311 KPMMYVALTYDHRLIDGREAVLFLQKEAHLEAFQKKYGLKLGFMSPFIKASAYALQDQPVVNAVIEGTDIVYRDYVDISV  390 (431)
Q Consensus       311 ~~~m~lslt~DHRvIDg~~a~~fl~~lk~l~~~~~~~~~klt~~~~~~ka~~~aL~~~P~~Na~~~~~~i~~~~~vnigv  390 (431)
                      .|+++++..     +|.+.+.+++++            .++|++++++||++.||++||++|++|+++.|+++++||||+
T Consensus        30 ~P~~t~~~e-----vDvt~l~~~rk~------------~~ls~~~~~ikAv~~Al~~~P~~Na~~~~~~i~~~~~v~igi   92 (219)
T 1q23_A           30 QCTYNQTVQ-----LDITAFLKTVKK------------NKHKFYPAFIHILARLMNAHPEFRMAMKDGELVIWDSVHPCY   92 (219)
T ss_dssp             CEEEEEEEE-----EECHHHHHHHHH------------TTCCHHHHHHHHHHHHHTTCGGGSEEEETTEEEEESCCEEEE
T ss_pred             CcEEEEEEE-----EEhHHHHHHHHH------------cCCCHHHHHHHHHHHHHHhChHhhEEEECCEEEEecccCeEE
Confidence            356677666     455676666532            279999999999999999999999999999999999999999


Q ss_pred             EE-ecCCCeeeceecCcccCCHHHHHHHHHHHHHHHHcC-CCC
Q psy14345        391 AV-ATPKGLVVPVIRNVEAMNFADIELTIAALGEKARTG-KYT  431 (431)
Q Consensus       391 AV-~~~~GL~vPvi~~a~~~~l~~ia~~~~~l~~~ar~g-~L~  431 (431)
                      || ++++||++||++. ..+++.+|++++++|++|||+| +|+
T Consensus        93 AV~~t~~GL~~pvi~~-~~~~l~~i~~~~~~l~~~ar~~~kL~  134 (219)
T 1q23_A           93 TVFHEQTETFSSLWSE-YHDDFRQFLHIYSQDVACYGENLAYF  134 (219)
T ss_dssp             EEEETTTTEEEEEECC-CCSSHHHHHHHHHHHHHHHTTCCSSS
T ss_pred             EEEecCCcEEEEEEec-CCCCHHHHHHHHHHHHHHHHccCCCC
Confidence            99 9999999999997 5689999999999999999998 573

>2xt6_A 2-oxoglutarate decarboxylase; lyase, KDH, KGD; HET: TPP; 2.74A {Mycobacterium smegmatis}

Probab=99.72  E-value=9.2e-18  Score=190.03  Aligned_cols=114  Identities=20%  Similarity=0.236  Sum_probs=94.3

Q ss_pred             eeeeeeeeeeeeeeeehHHHHHHHHHHHhHhhhhhhcccccCCcchHHHHHHHHhhcCCccceeeeCC----eeEEcCCc
Q psy14345        311 KPMMYVALTYDHRLIDGREAVLFLQKEAHLEAFQKKYGLKLGFMSPFIKASAYALQDQPVVNAVIEGT----DIVYRDYV  386 (431)
Q Consensus       311 ~~~m~lslt~DHRvIDg~~a~~fl~~lk~l~~~~~~~~~klt~~~~~~ka~~~aL~~~P~~Na~~~~~----~i~~~~~v  386 (431)
                      .|+++++..     ||.+.+.++++.+++.  +.++.|.|+|+++|++||++.||++||++|++|+++    .|+++++|
T Consensus         8 ~P~~t~~~e-----vDvt~l~~~R~~~k~~--~~~~~g~kls~~~~iikAva~AL~~~P~~Na~~~~~~~~~~i~~~~~v   80 (1113)
T 2xt6_A            8 VPTATSVRA-----IPAKLMIDNRVVINNH--LKRTRGGKISFTHLLGYAIVQAVKKFPNMNRHFAVVDGKPTAITPAHT   80 (1113)
T ss_dssp             CCEEEEEEE-----EECHHHHHHHHHHHHH--HHHTTCCCCCHHHHHHHHHHHHHHHCGGGGCEEEESSSSEEEECCSSC
T ss_pred             CCeEEEEEE-----EehHHHHHHHHHHHhh--hhhhcCCCccHHHHHHHHHHHHHHhChHhhEEEeccCCCceEEEeCcc
Confidence            345555444     6778999999888752  233468899999999999999999999999999753    79999999


Q ss_pred             ceEEEEecC--CC---eeeceecCcccCCHHHHHHHHHHHHHHHHcCCCC
Q psy14345        387 DISVAVATP--KG---LVVPVIRNVEAMNFADIELTIAALGEKARTGKYT  431 (431)
Q Consensus       387 nigvAV~~~--~G---L~vPvi~~a~~~~l~~ia~~~~~l~~~ar~g~L~  431 (431)
                      |||+||+++  +|   |+|||||||+++||.||++++++|++|||+|+|+
T Consensus        81 nigiAV~t~~~~G~~gL~vPvI~~a~~~sl~ei~~~i~~l~~rAr~gkL~  130 (1113)
T 2xt6_A           81 NLGLAIDLQGKDGNRSLVVAAIKRCETMRFGQFIAAYEDIVRRARDGKLT  130 (1113)
T ss_dssp             CEEEEC-----------CEEEECCGGGCCHHHHHHHHHHHHHHHTTTCCC
T ss_pred             cEEEEEeccCCCCceeEEeeeecCCCCCCHHHHHHHHHHHHHHHhcCCCC
Confidence            999999997  66   9999999999999999999999999999999985

>2i9d_A Chloramphenicol acetyltransferase; structural genomics, PSI- protein structure initiative, midwest center for structural genomics; 2.30A {Bacteroides thetaiotaomicron}

Probab=99.71  E-value=2e-17  Score=155.80  Aligned_cols=103  Identities=13%  Similarity=0.123  Sum_probs=89.5

Q ss_pred             eeeeeeeeeeeeeeeehHHHHHHHHHHHhHhhhhhhcccccCCcchHHHHHHHHhhcCCccceeee-CCeeEEcCCcceE
Q psy14345        311 KPMMYVALTYDHRLIDGREAVLFLQKEAHLEAFQKKYGLKLGFMSPFIKASAYALQDQPVVNAVIE-GTDIVYRDYVDIS  389 (431)
Q Consensus       311 ~~~m~lslt~DHRvIDg~~a~~fl~~lk~l~~~~~~~~~klt~~~~~~ka~~~aL~~~P~~Na~~~-~~~i~~~~~vnig  389 (431)
                      .|+++++..     +|.+.+.+++++            .++|++++++||+++||++||++|++|+ ++.|+++++||||
T Consensus        27 ~P~~~~~~e-----vDvt~l~~~rk~------------~~ls~~~~~ikAv~~Al~~~P~~n~~~~~~~~i~~~~~i~ig   89 (217)
T 2i9d_A           27 NPQLSITSE-----VECGGARQRAKA------------AGQSFFLHYLYAVLRAANEIPEFRYRIDPDGRVVLYDTIDML   89 (217)
T ss_dssp             BCEEEEEEE-----EECHHHHHHHHH------------TTCCHHHHHHHHHHHHHHHSGGGGEEECTTSCEEEESCCEEE
T ss_pred             CceEEEEEE-----EEhHHHHHHHHH------------cCCCHHHHHHHHHHHHHHhCHHhheEEcCCCEEEEecccCeE
Confidence            466777666     455666665432            2799999999999999999999999999 8999999999999


Q ss_pred             EEE-ecCCCeeeceecCcccCCHHHHHHHHHHHHHHHHc-CCCC
Q psy14345        390 VAV-ATPKGLVVPVIRNVEAMNFADIELTIAALGEKART-GKYT  431 (431)
Q Consensus       390 vAV-~~~~GL~vPvi~~a~~~~l~~ia~~~~~l~~~ar~-g~L~  431 (431)
                      +|| ++++||++||+.. ..+++.+|++++++|++|||+ |+|+
T Consensus        90 vAVf~t~~GL~~pv~~~-~~~~~~~i~~~~~~l~~~ar~~~kL~  132 (217)
T 2i9d_A           90 SPIKIKENGKFFTTRFP-YHNDFDTFYQEARLIIDAIPEDGDPY  132 (217)
T ss_dssp             EEEECSTTSCEEEEEEC-CCSSHHHHHHHHHHHHHHCCSSCCTT
T ss_pred             EEEEecCCceEeEEEec-CCCCHHHHHHHHHHHHHHHHhcCCCC
Confidence            999 9999999999874 568999999999999999999 5884

>1bal_A Dihydrolipoamide succinyltransferase; glycolysis; NMR {Escherichia coli} SCOP: a.9.1.1 PDB: 1bbl_A 1w4h_A 2wav_A 2wxc_A 2btg_A 2bth_A 2cyu_A

Probab=92.57  E-value=0.085  Score=37.50  Aligned_cols=25  Identities=20%  Similarity=0.197  Sum_probs=20.6

Q ss_pred             CCCCC-chhhhcCCCccccCCCCCCC
Q psy14345         71 SSPSP-SLCYSSAIEAATVKLPPADP   95 (431)
Q Consensus        71 ~sp~~-~lA~e~gIdl~~v~gtg~dv   95 (431)
                      ++|.+ ++|+|+|||++.++|||.+.
T Consensus        12 asP~aR~lA~e~gidl~~V~gtG~~G   37 (51)
T 1bal_A           12 LSPAIRRLLAEHNLDASAIKGTGVGG   37 (51)
T ss_dssp             CCGGGTTHHHHTTCCTTSSCCCSTTS
T ss_pred             CChHHHHHHHHcCCCccccCCCCCCC
Confidence            45555 89999999999999998543

>2eq7_C 2-oxoglutarate dehydrogenase E2 component; protein-protein complex, oxidoreductase; HET: FAD NAD; 1.80A {Thermus thermophilus}

Probab=89.78  E-value=0.077  Score=35.51  Aligned_cols=24  Identities=17%  Similarity=0.166  Sum_probs=19.6

Q ss_pred             CCCC-chhhhcCCCccccCCCCCCC
Q psy14345         72 SPSP-SLCYSSAIEAATVKLPPADP   95 (431)
Q Consensus        72 sp~~-~lA~e~gIdl~~v~gtg~dv   95 (431)
                      +|.+ ++|+|+|||++.++|||.+.
T Consensus         3 sP~ar~la~e~gidl~~v~gtG~~g   27 (40)
T 2eq7_C            3 MPAAERLMQEKGVSPAEVQGTGLGG   27 (40)
T ss_dssp             CHHHHHHHHHTTCCTTTSCCCSSSS
T ss_pred             CcHHHHHHHHhCCChhhcCCCCCCC
Confidence            3444 89999999999999998543

>3rnm_E Lipoamide acyltransferase component of branched-C alpha-keto acid dehydrogenase complex,...; protein-protein interaction, redox protein; HET: FAD NHE; 2.40A {Homo sapiens} SCOP: a.9.1.0 PDB: 1zwv_A

Probab=89.61  E-value=0.07  Score=39.12  Aligned_cols=25  Identities=20%  Similarity=0.260  Sum_probs=20.8

Q ss_pred             CCCCCC-chhhhcCCCccccCCCCCC
Q psy14345         70 CSSPSP-SLCYSSAIEAATVKLPPAD   94 (431)
Q Consensus        70 ~~sp~~-~lA~e~gIdl~~v~gtg~d   94 (431)
                      .++|.+ +||+|+|||++.++|||.+
T Consensus         9 ~aSPaaRrlA~e~gIdl~~V~GTG~~   34 (58)
T 3rnm_E            9 LATPAVRNLAMENNIKLSEVVGSGKD   34 (58)
T ss_dssp             CCCHHHHHHHHHTTCCGGGCCCCSGG
T ss_pred             CcCHHHHHHHHHcCCCHHHCCCCCCC
Confidence            455665 9999999999999999854

>2eq8_C Pyruvate dehydrogenase complex, dihydrolipoamide acetyltransferase E2 component; protein-protein complex, oxidoreductase; HET: FAD; 1.94A {Thermus thermophilus}

Probab=89.55  E-value=0.075  Score=35.58  Aligned_cols=24  Identities=13%  Similarity=0.140  Sum_probs=19.7

Q ss_pred             CCCC-chhhhcCCCccccCCCCCCC
Q psy14345         72 SPSP-SLCYSSAIEAATVKLPPADP   95 (431)
Q Consensus        72 sp~~-~lA~e~gIdl~~v~gtg~dv   95 (431)
                      +|.+ ++|+|+|||++.++|||.+.
T Consensus         3 sP~ar~la~e~gidl~~v~gtG~~g   27 (40)
T 2eq8_C            3 APSIRRLARELGVDLTRLRGTGLAG   27 (40)
T ss_dssp             CHHHHHHHHHHTCCGGGCCCCSTTS
T ss_pred             ChHHHHHHHHhCCChhhcCCCCCCC
Confidence            3444 89999999999999998654

>2eq9_C Pyruvate dehydrogenase complex, dihydrolipoamide acetyltransferase E2 component; protein-protein complex, oxidoreductase; HET: FAD; 2.09A {Thermus thermophilus}

Probab=89.28  E-value=0.078  Score=35.68  Aligned_cols=24  Identities=17%  Similarity=0.057  Sum_probs=19.9

Q ss_pred             CCCC-chhhhcCCCccccCCCCCCC
Q psy14345         72 SPSP-SLCYSSAIEAATVKLPPADP   95 (431)
Q Consensus        72 sp~~-~lA~e~gIdl~~v~gtg~dv   95 (431)
                      +|.+ ++|+|+|||++.++|||.+.
T Consensus         4 sP~ar~la~e~gidl~~v~gtG~~g   28 (41)
T 2eq9_C            4 VPAARKLARELGIPIEEVPGSGPLG   28 (41)
T ss_dssp             CHHHHHHHHHTTCCGGGSCCCSTTC
T ss_pred             ChHHHHHHHHcCCChhhcCCCCCCC
Confidence            4444 89999999999999998654

>1w85_I Dihydrolipoyllysine-residue acetyltransferase component of pyruvate; dehydrogenase, multienzyme complex, oxidoreductase; HET: TDP; 2.0A {Geobacillus stearothermophilus} SCOP: a.9.1.1 PDB: 1w88_I* 1w4g_A 1w4e_A 1w4f_A 2pdd_A 2pde_A 1ebd_C*

Probab=86.31  E-value=0.17  Score=35.54  Aligned_cols=24  Identities=13%  Similarity=0.158  Sum_probs=19.9

Q ss_pred             CCCCC-chhhhcCCCccccCCCCCC
Q psy14345         71 SSPSP-SLCYSSAIEAATVKLPPAD   94 (431)
Q Consensus        71 ~sp~~-~lA~e~gIdl~~v~gtg~d   94 (431)
                      ++|.+ ++|+|+|||++.++|||.+
T Consensus         9 asP~ar~la~e~gidl~~v~gtG~~   33 (49)
T 1w85_I            9 AMPSVRKYAREKGVDIRLVQGTGKN   33 (49)
T ss_dssp             CCHHHHHHHHHTTCCTTTSCCCSGG
T ss_pred             CChHHHHHHHHcCCCccccCCCCCC
Confidence            45555 9999999999999999854

>2k7v_A Dihydrolipoyllysine-residue acetyltransferase component of pyruvate dehydrogenase...; misfolded dimer, acyltransferase, glycolysis; NMR {Escherichia coli}

Probab=85.84  E-value=0.76  Score=35.57  Aligned_cols=25  Identities=16%  Similarity=0.230  Sum_probs=14.0

Q ss_pred             eeeeeecCCCCeEecCceeEEEecC
Q psy14345         13 FLLLASLEDGATVKAGQQLFKIKPT   37 (431)
Q Consensus        13 ~~l~~~~~eGd~v~VG~~L~~Ie~~   37 (431)
                      .+..+.+++||.|..|++|++|+..
T Consensus        49 ~V~~~~v~~G~~V~~G~~l~~i~~~   73 (85)
T 2k7v_A           49 VVKELKVNVGDKVKTGSLIMIFEVE   73 (85)
T ss_dssp             CCCEECSCTTCCBCTTSEEEEEECC
T ss_pred             EEEEEEeCCCCEECCCCEEEEEEcC
Confidence            3444455666666666666666543

>1dcz_A Transcarboxylase 1.3S subunit; antiparallel beta sheet, hammerhead, biocytin, transferase; NMR {Propionibacterium freudenreichiisubsp} SCOP: b.84.1.1 PDB: 1dd2_A 1o78_A

Probab=84.41  E-value=0.91  Score=34.06  Aligned_cols=32  Identities=22%  Similarity=0.290  Sum_probs=26.1

Q ss_pred             ccccccceeeeeecCCCCeEecCceeEEEecC
Q psy14345          6 LKQNNKKFLLLASLEDGATVKAGQQLFKIKPT   37 (431)
Q Consensus         6 ~~~~~~~~~l~~~~~eGd~v~VG~~L~~Ie~~   37 (431)
                      +...-+-.+..+++++||.|+.|++|++|+..
T Consensus        11 v~a~~~G~v~~~~v~~G~~V~~G~~L~~l~~~   42 (77)
T 1dcz_A           11 IPAPLAGTVSKILVKEGDTVKAGQTVLVLEAM   42 (77)
T ss_dssp             EEBSSSCEEEEECCCTTCEECTTSEEEEEEET
T ss_pred             EECCCCEEEEEEEcCCcCEEcCCCEEEEEEcc
Confidence            44455566777899999999999999999954

>2dnc_A Pyruvate dehydrogenase protein X component; lipoic acid, lipoyl domain, 2-oxoacid dehydrogenase, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=83.61  E-value=1.3  Score=35.46  Aligned_cols=25  Identities=24%  Similarity=0.343  Sum_probs=17.5

Q ss_pred             eeeeeecCCCCeEecCceeEEEecC
Q psy14345         13 FLLLASLEDGATVKAGQQLFKIKPT   37 (431)
Q Consensus        13 ~~l~~~~~eGd~v~VG~~L~~Ie~~   37 (431)
                      -+...++++||.|+.|++|+.||..
T Consensus        23 ~i~~~~v~~Gd~V~~G~~L~~ie~~   47 (98)
T 2dnc_A           23 NIVKWLKKEGEAVSAGDALCEIETD   47 (98)
T ss_dssp             CEEEESSCTTCEECTTSEEEEEECS
T ss_pred             EEEEEEcCCCCEeCCCCEEEEEEcc
Confidence            4455577777777777777777743

>2d5d_A Methylmalonyl-COA decarboxylase gamma chain; biotin, BCCP, structural genomics, NPPSFA; 1.55A {Pyrococcus horikoshii} PDB: 2ejf_C* 2ejg_C* 2evb_A

Probab=83.57  E-value=1  Score=33.39  Aligned_cols=31  Identities=19%  Similarity=0.231  Sum_probs=25.1

Q ss_pred             cccccceeeeeecCCCCeEecCceeEEEecC
Q psy14345          7 KQNNKKFLLLASLEDGATVKAGQQLFKIKPT   37 (431)
Q Consensus         7 ~~~~~~~~l~~~~~eGd~v~VG~~L~~Ie~~   37 (431)
                      ...-+-.+...++++||.|+.|++|++|+..
T Consensus         9 ~a~~~G~v~~~~v~~G~~V~~G~~l~~i~~~   39 (74)
T 2d5d_A            9 SAPMPGKVLRVLVRVGDRVRVGQGLLVLEAM   39 (74)
T ss_dssp             ECSSCEEEEEECCCTTCEECTTCEEEEEEET
T ss_pred             ecCCCEEEEEEEcCCCCEeCCCCEEEEEecc
Confidence            3444556677899999999999999999954

>1qjo_A Dihydrolipoamide acetyltransferase; lipoyl domain, pyruvate dehydrogenase; NMR {Escherichia coli} SCOP: b.84.1.1

Probab=83.27  E-value=0.96  Score=34.31  Aligned_cols=28  Identities=18%  Similarity=0.162  Sum_probs=24.1

Q ss_pred             cceeeeeecCCCCeEecCceeEEEecCC
Q psy14345         11 KKFLLLASLEDGATVKAGQQLFKIKPTA   38 (431)
Q Consensus        11 ~~~~l~~~~~eGd~v~VG~~L~~Ie~~~   38 (431)
                      +-.+..+++++||.|+.|++|++|+...
T Consensus        14 ~G~v~~~~v~~G~~V~~G~~l~~ie~~~   41 (80)
T 1qjo_A           14 EVEVTEVMVKVGDKVAAEQSLITVEGDK   41 (80)
T ss_dssp             CEEEEECCCCTTCEECBTSEEEEEESSS
T ss_pred             CEEEEEEEcCCCCEECCCCEEEEEEcCC
Confidence            5567777999999999999999999543

>1qjo_A Dihydrolipoamide acetyltransferase; lipoyl domain, pyruvate dehydrogenase; NMR {Escherichia coli} SCOP: b.84.1.1

Probab=82.88  E-value=1  Score=34.14  Aligned_cols=31  Identities=13%  Similarity=0.130  Sum_probs=24.9

Q ss_pred             ccccceeeeeecCCCCeEecCceeEEEecCC
Q psy14345          8 QNNKKFLLLASLEDGATVKAGQQLFKIKPTA   38 (431)
Q Consensus         8 ~~~~~~~l~~~~~eGd~v~VG~~L~~Ie~~~   38 (431)
                      ..-+-.+..+.+++||.|..|++|++|+..+
T Consensus        48 Ap~~G~v~~~~v~~G~~V~~G~~l~~i~~~~   78 (80)
T 1qjo_A           48 APFAGVVKELKVNVGDKVKTGSLIMIFEVEG   78 (80)
T ss_dssp             BSSCEEEEECCCCTTCEECTTCCCEEEESCC
T ss_pred             CCCCEEEEEEecCCCCEECCCCEEEEEEccC
Confidence            3344566677999999999999999999653

>1z6h_A Biotin/lipoyl attachment protein; solution structure, biosynthetic protein; HET: BTI; NMR {Bacillus subtilis} PDB: 1z7t_A 2b8f_A 2b8g_A*

Probab=82.66  E-value=1.1  Score=33.04  Aligned_cols=27  Identities=15%  Similarity=0.268  Sum_probs=22.8

Q ss_pred             cceeeeeecCCCCeEecCceeEEEecC
Q psy14345         11 KKFLLLASLEDGATVKAGQQLFKIKPT   37 (431)
Q Consensus        11 ~~~~l~~~~~eGd~v~VG~~L~~Ie~~   37 (431)
                      +-.+...++++||.|+.|++|++|+..
T Consensus         7 ~G~v~~~~v~~G~~V~~G~~l~~i~~~   33 (72)
T 1z6h_A            7 AGNLWKVHVKAGDQIEKGQEVAILESM   33 (72)
T ss_dssp             SEEEEEECCCTTCEECTTCEEEEEEET
T ss_pred             cEEEEEEEcCCcCEECCCCEEEEEECC
Confidence            345667799999999999999999964

>1k8m_A E2 component of branched-chain ahpha-ketoacid dehydrogenase; lipoyl acid bearing, human BCKD, experimental DATA, average structure, transferase; NMR {Homo sapiens} SCOP: b.84.1.1 PDB: 1k8o_A

Probab=82.50  E-value=1.5  Score=34.63  Aligned_cols=29  Identities=10%  Similarity=0.123  Sum_probs=22.8

Q ss_pred             ccceeeeeecCCCCeEecCceeEEEecCC
Q psy14345         10 NKKFLLLASLEDGATVKAGQQLFKIKPTA   38 (431)
Q Consensus        10 ~~~~~l~~~~~eGd~v~VG~~L~~Ie~~~   38 (431)
                      .+-.+....+++||.|+.|++|++||...
T Consensus        17 ~~G~v~~~~v~~Gd~V~~G~~l~~ie~~K   45 (93)
T 1k8m_A           17 REVTVKEWYVKEGDTVSQFDSICEVQSDK   45 (93)
T ss_dssp             CCEEEEEECCCTTCEECSSSCCEEEECSS
T ss_pred             CCEEEEEEEcCCcCEECCCCEEEEEEcCC
Confidence            34455666999999999999999999544

>2k32_A A; NMR {Campylobacter jejuni} PDB: 2k33_A*

Probab=81.04  E-value=1.3  Score=36.09  Aligned_cols=30  Identities=27%  Similarity=0.392  Sum_probs=24.9

Q ss_pred             ccccceeeeeecCCCCeEecCceeEEEecC
Q psy14345          8 QNNKKFLLLASLEDGATVKAGQQLFKIKPT   37 (431)
Q Consensus         8 ~~~~~~~l~~~~~eGd~v~VG~~L~~Ie~~   37 (431)
                      ..-+-.+..+++++||.|+.|++|++|+..
T Consensus         6 a~~~G~V~~v~v~~G~~V~~Gq~L~~ld~~   35 (116)
T 2k32_A            6 PQVSGVIVNKLFKAGDKVKKGQTLFIIEQD   35 (116)
T ss_dssp             CSSCEEEEEECSCTTSEECTTCEEEEEECT
T ss_pred             CcCCEEEEEEECCCcCEECCCCEEEEECHH
Confidence            344556777899999999999999999965

>2coo_A Lipoamide acyltransferase component of branched- chain alpha-keto acid dehydrogenase...; E3_binding domain; NMR {Homo sapiens}

Probab=80.75  E-value=0.6  Score=35.39  Aligned_cols=25  Identities=20%  Similarity=0.244  Sum_probs=20.6

Q ss_pred             CCCCC-chhhhcCCCccccCCCCCCC
Q psy14345         71 SSPSP-SLCYSSAIEAATVKLPPADP   95 (431)
Q Consensus        71 ~sp~~-~lA~e~gIdl~~v~gtg~dv   95 (431)
                      ++|.+ +||+|+||||..|++||.+.
T Consensus        18 aSPaaRklA~e~gidl~~V~GTG~~G   43 (70)
T 2coo_A           18 ATPAVRRLAMENNIKLSEVVGSGKDG   43 (70)
T ss_dssp             SCHHHHHHHHHHTCCGGGSCCCSTTS
T ss_pred             cCcHHHHHHHHhCCCccccCCCCCCC
Confidence            45555 99999999999999998543

>1iyu_A E2P, dihydrolipoamide acetyltransferase component of pyruvate dehydrogenase complex; glycolysis, acyltransferase, lipoyl; NMR {Azotobacter vinelandii} SCOP: b.84.1.1 PDB: 1iyv_A

Probab=80.67  E-value=0.98  Score=34.27  Aligned_cols=26  Identities=12%  Similarity=0.193  Sum_probs=22.7

Q ss_pred             eeeeeecCCCCeEecCceeEEEecCC
Q psy14345         13 FLLLASLEDGATVKAGQQLFKIKPTA   38 (431)
Q Consensus        13 ~~l~~~~~eGd~v~VG~~L~~Ie~~~   38 (431)
                      .+...++++||.|+.|++|++|+...
T Consensus        14 ~i~~~~v~~Gd~V~~G~~l~~le~~k   39 (79)
T 1iyu_A           14 EVIELLVKTGDLIEVEQGLVVLESAK   39 (79)
T ss_dssp             EEEEECCCTTCBCCSSSEEEEEECSS
T ss_pred             EEEEEecCCCCEEcCCCEEEEEEccc
Confidence            66677999999999999999999543

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	431
d1scza_	233	c.43.1.1 (A:) Dihydrolipoamide succinyltransferase	4e-63
d1scza_	233	c.43.1.1 (A:) Dihydrolipoamide succinyltransferase	2e-17
d1b5sa_	242	c.43.1.1 (A:) Dihydrolipoamide acetyltransferase {	6e-43
d1b5sa_	242	c.43.1.1 (A:) Dihydrolipoamide acetyltransferase {	2e-08
d1dpba_	243	c.43.1.1 (A:) Dihydrolipoamide acetyltransferase {	7e-41
d3claa_	213	c.43.1.1 (A:) Chloramphenicol acetyltransferase, C	2e-30
d3claa_	213	c.43.1.1 (A:) Chloramphenicol acetyltransferase, C	2e-21
d1q23a_	214	c.43.1.1 (A:) Chloramphenicol acetyltransferase, C	1e-29
d1q23a_	214	c.43.1.1 (A:) Chloramphenicol acetyltransferase, C	3e-20

>d1scza_ c.43.1.1 (A:) Dihydrolipoamide succinyltransferase {Escherichia coli [TaxId: 562]} Length = 233

class: Alpha and beta proteins (a/b)
fold: CoA-dependent acyltransferases
superfamily: CoA-dependent acyltransferases
family: CAT-like
domain: Dihydrolipoamide succinyltransferase
species: Escherichia coli [TaxId: 562]

 Score =  201 bits (512), Expect = 4e-63
 Identities = 116/234 (49%), Positives = 155/234 (66%), Gaps = 17/234 (7%)

Query: 103 RSEQRVKMNRMRQRIAQRLKEAQNVNAMLTTFNEIDMSAIIEFRKAHLEAFQKKYGLKLG 162
           RSE+RV M R+R+R+A+RL EA+N  AMLTTFNE++M  I++ RK + EAF+K++G++LG
Sbjct: 2   RSEKRVPMTRLRKRVAERLLEAKNSTAMLTTFNEVNMKPIMDLRKQYGEAFEKRHGIRLG 61

Query: 163 FMSPFIKASAYALQDQPVVNAVIEGTDIVYRDYVDISVGMGRNESNLPRWCFNGLLSGVL 222
           FMS ++KA   AL+  P VNA I+G D+VY +Y D+S+ +             GL++ VL
Sbjct: 62  FMSFYVKAVVEALKRYPEVNASIDGDDVVYHNYFDVSMAVSTP---------RGLVTPVL 112

Query: 223 VLTEHLNGKYCVSSRPSYERHTTGWACYDRLNWNLAIEDSDGGTFTISNGGVFGSLLGTP 282
              +              E+     A   R    L +ED  GG FTI+NGGVFGSL+ TP
Sbjct: 113 RDVDT-------LGMADIEKKIKELAVKGRDG-KLTVEDLTGGNFTITNGGVFGSLMSTP 164

Query: 283 IINPPQSAILGMHGTFERPVAIKGQVVVKPMMYVALTYDHRLIDGREAVLFLQK 336
           IINPPQSAILGMH   +RP+A+ GQV + PMMY+AL+YDHRLIDGRE+V FL  
Sbjct: 165 IINPPQSAILGMHAIKDRPMAVNGQVEILPMMYLALSYDHRLIDGRESVGFLVT 218

>d1scza_ c.43.1.1 (A:) Dihydrolipoamide succinyltransferase {Escherichia coli [TaxId: 562]} Length = 233

class: Alpha and beta proteins (a/b)
fold: CoA-dependent acyltransferases
superfamily: CoA-dependent acyltransferases
family: CAT-like
domain: Dihydrolipoamide succinyltransferase
species: Escherichia coli [TaxId: 562]

 Score = 79.2 bits (195), Expect = 2e-17
 Identities = 52/139 (37%), Positives = 85/139 (61%), Gaps = 8/139 (5%)

Query: 299 ERPVAIKG--QVVVKPMMY----VALTYDHRLIDGREAVLFLQKEAHLEAFQKKYGLKLG 352
           E+ V +    + V + ++      A+      ++ +  +   ++  + EAF+K++G++LG
Sbjct: 4   EKRVPMTRLRKRVAERLLEAKNSTAMLTTFNEVNMKPIMDLRKQ--YGEAFEKRHGIRLG 61

Query: 353 FMSPFIKASAYALQDQPVVNAVIEGTDIVYRDYVDISVAVATPKGLVVPVIRNVEAMNFA 412
           FMS ++KA   AL+  P VNA I+G D+VY +Y D+S+AV+TP+GLV PV+R+V+ +  A
Sbjct: 62  FMSFYVKAVVEALKRYPEVNASIDGDDVVYHNYFDVSMAVSTPRGLVTPVLRDVDTLGMA 121

Query: 413 DIELTIAALGEKARTGKYT 431
           DIE  I  L  K R GK T
Sbjct: 122 DIEKKIKELAVKGRDGKLT 140

>d1b5sa_ c.43.1.1 (A:) Dihydrolipoamide acetyltransferase {Bacillus stearothermophilus [TaxId: 1422]} Length = 242

class: Alpha and beta proteins (a/b)
fold: CoA-dependent acyltransferases
superfamily: CoA-dependent acyltransferases
family: CAT-like
domain: Dihydrolipoamide acetyltransferase
species: Bacillus stearothermophilus [TaxId: 1422]

 Score =  149 bits (376), Expect = 6e-43
 Identities = 62/245 (25%), Positives = 112/245 (45%), Gaps = 32/245 (13%)

Query: 100 SGTRSEQRVKMNRMRQRIAQRLKEAQNVNAMLTTFNEIDMSAIIEFRKAHLEAFQKKYGL 159
            G   E R KM+ +R+ IA+ +  +++    +T  +E D++ ++  RK   +A   + G+
Sbjct: 9   EGEFPETREKMSGIRRAIAKAMVHSKHTAPHVTLMDEADVTKLVAHRKKF-KAIAAEKGI 67

Query: 160 KLGFMSPFIKASAYALQDQPVVNAVIEGT--DIVYRDYVDISVGMGRNESNLPRWCFNGL 217
           KL F+   +KA   AL++ PV+N  I+    +I+ + Y +I +    +            
Sbjct: 68  KLTFLPYVVKALVSALREYPVLNTSIDDETEEIIQKHYYNIGIAADTD------------ 115

Query: 218 LSGVLVLTEHLNGKYCVSSRPSYERHTTG-WACYDRL-----NWNLAIEDSDGGTFTISN 271
                       G      + +  +         + L     +  L   +  G + TI+N
Sbjct: 116 -----------RGLLVPVIKHADRKPIFALAQEINELAEKARDGKLTPGEMKGASCTITN 164

Query: 272 GGVFGSLLGTPIINPPQSAILGMHGTFERPVAIKGQVVVKPMMYVALTYDHRLIDGREAV 331
            G  G    TP+IN P+ AILG+    E+P+   G++V  PM+ ++L++DHR+IDG  A 
Sbjct: 165 IGSAGGQWFTPVINHPEVAILGIGRIAEKPIVRDGEIVAAPMLALSLSFDHRMIDGATAQ 224

Query: 332 LFLQK 336
             L  
Sbjct: 225 KALNH 229

>d1b5sa_ c.43.1.1 (A:) Dihydrolipoamide acetyltransferase {Bacillus stearothermophilus [TaxId: 1422]} Length = 242

class: Alpha and beta proteins (a/b)
fold: CoA-dependent acyltransferases
superfamily: CoA-dependent acyltransferases
family: CAT-like
domain: Dihydrolipoamide acetyltransferase
species: Bacillus stearothermophilus [TaxId: 1422]

 Score = 52.5 bits (125), Expect = 2e-08
 Identities = 33/101 (32%), Positives = 54/101 (53%), Gaps = 2/101 (1%)

Query: 333 FLQKEAHLEAFQKKYGLKLGFMSPFIKASAYALQDQPVVNAVIEGT--DIVYRDYVDISV 390
            +      +A   + G+KL F+   +KA   AL++ PV+N  I+    +I+ + Y +I +
Sbjct: 51  LVAHRKKFKAIAAEKGIKLTFLPYVVKALVSALREYPVLNTSIDDETEEIIQKHYYNIGI 110

Query: 391 AVATPKGLVVPVIRNVEAMNFADIELTIAALGEKARTGKYT 431
           A  T +GL+VPVI++ +      +   I  L EKAR GK T
Sbjct: 111 AADTDRGLLVPVIKHADRKPIFALAQEINELAEKARDGKLT 151

>d1dpba_ c.43.1.1 (A:) Dihydrolipoamide acetyltransferase {Azotobacter vinelandii [TaxId: 354]} Length = 243

class: Alpha and beta proteins (a/b)
fold: CoA-dependent acyltransferases
superfamily: CoA-dependent acyltransferases
family: CAT-like
domain: Dihydrolipoamide acetyltransferase
species: Azotobacter vinelandii [TaxId: 354]

 Score =  143 bits (361), Expect = 7e-41
 Identities = 62/247 (25%), Positives = 104/247 (42%), Gaps = 17/247 (6%)

Query: 90  LPPADPTKEISGTRSEQRVKMNRMRQRIAQRLKEAQNVNAMLTTFNEIDMSAIIEFRKAH 149
           +PP  P  + +     + V M R+ Q  A  L  +      +T F   D++ +  FR A 
Sbjct: 1   IPPI-PPVDFAKYGEIEEVPMTRLMQIGATNLHRSWLNVPHVTQFESADITELEAFRVAQ 59

Query: 150 LEAFQKKYGLKLGFMSPFIKASAYALQDQPVVNAVIEGTDIVYRDYVDISVGMGRNESNL 209
            +A  +K G+KL  +   +KA AY L++ P  N+ +  +         + +G   +  + 
Sbjct: 60  -KAVAEKAGVKLTVLPLLLKACAYLLKELPDFNSSLAPSGQALIRKKYVHIGFAVDTPD- 117

Query: 210 PRWCFNGLLSGVLVLTEHLNGKYCVSSRPSYERHTTGWACYDRLNWNLAIEDSDGGTFTI 269
                 GLL  V+   +  +                  A   R    L  +   G  FTI
Sbjct: 118 ------GLLVPVIRNVDQKSLLQL-------AAEAAELAEKARSKK-LGADAMQGACFTI 163

Query: 270 SNGGVFGSLLGTPIINPPQSAILGMHGTFERPVAIKGQVVVKPMMYVALTYDHRLIDGRE 329
           S+ G  G    TPI+N P+ AILG+     +PV        + M+ ++L+YD R+I+G  
Sbjct: 164 SSLGHIGGTAFTPIVNAPEVAILGVSKASMQPVWDGKAFQPRLMLPLSLSYDCRVINGAA 223

Query: 330 AVLFLQK 336
           A  F ++
Sbjct: 224 AARFTKR 230

>d3claa_ c.43.1.1 (A:) Chloramphenicol acetyltransferase, CAT {Escherichia coli [TaxId: 562]} Length = 213

class: Alpha and beta proteins (a/b)
fold: CoA-dependent acyltransferases
superfamily: CoA-dependent acyltransferases
family: CAT-like
domain: Chloramphenicol acetyltransferase, CAT
species: Escherichia coli [TaxId: 562]

 Score =  114 bits (286), Expect = 2e-30
 Identities = 20/216 (9%), Positives = 56/216 (25%), Gaps = 38/216 (17%)

Query: 125 QNVNAMLTTFNEIDMSAIIEFRKAHLEAFQKKYGLKLGFMSPFIKASAYALQDQPVVNAV 184
             +    +  ++ID++ + +                  F    I   A A+     +   
Sbjct: 22  HRLPCGFSLTSKIDITTLKKSLDDS----------AYKFYPVMIYLIAQAVNQFDELRMA 71

Query: 185 IEGTDIVYRDYVDISVGMGRNESNLPRWCFNGLLSGVLVLTEHLN-GKYCVSSRPSYERH 243
           I+  +++  D VD    +   E               L      +  ++ V+     ER+
Sbjct: 72  IKDDELIVWDSVDPQFTVFHQE---------TETFSALSCPYSSDIDQFMVNYLSVMERY 122

Query: 244 TTGWACYDRLNWNLAIEDSDGGTFTISNGGVFGSLLGTPIINPPQSAILGMHGTFERPVA 303
            +                       ++       +          +           P+ 
Sbjct: 123 KSD---------TKLFPQGVTPENHLNISA-LPWVNFDSFNLNVANFTDYF-----APII 167

Query: 304 IKGQVVV---KPMMYVALTYDHRLIDGREAVLFLQK 336
              +      + ++ +++   H + DG     F+ +
Sbjct: 168 TMAKYQQEGDRLLLPLSVQVHHAVCDGFHVARFINR 203

>d3claa_ c.43.1.1 (A:) Chloramphenicol acetyltransferase, CAT {Escherichia coli [TaxId: 562]} Length = 213

class: Alpha and beta proteins (a/b)
fold: CoA-dependent acyltransferases
superfamily: CoA-dependent acyltransferases
family: CAT-like
domain: Chloramphenicol acetyltransferase, CAT
species: Escherichia coli [TaxId: 562]

 Score = 90.0 bits (223), Expect = 2e-21
 Identities = 12/91 (13%), Positives = 29/91 (31%), Gaps = 2/91 (2%)

Query: 339 HLEAFQKKYGLKLGFMSPFIKASAYALQDQPVVNAVIEGTDIVYRDYVDISVAVATPKGL 398
            L+        K  F    I   A A+     +   I+  +++  D VD    V   +  
Sbjct: 38  TLKKSLDDSAYK--FYPVMIYLIAQAVNQFDELRMAIKDDELIVWDSVDPQFTVFHQETE 95

Query: 399 VVPVIRNVEAMNFADIELTIAALGEKARTGK 429
               +    + +     +   ++ E+ ++  
Sbjct: 96  TFSALSCPYSSDIDQFMVNYLSVMERYKSDT 126

>d1q23a_ c.43.1.1 (A:) Chloramphenicol acetyltransferase, CAT {Escherichia coli [TaxId: 562]} Length = 214

class: Alpha and beta proteins (a/b)
fold: CoA-dependent acyltransferases
superfamily: CoA-dependent acyltransferases
family: CAT-like
domain: Chloramphenicol acetyltransferase, CAT
species: Escherichia coli [TaxId: 562]

 Score =  112 bits (282), Expect = 1e-29
 Identities = 28/224 (12%), Positives = 59/224 (26%), Gaps = 38/224 (16%)

Query: 125 QNVNAMLTTFNEIDMSAIIEFRKAHLEAFQKKYGLKLGFMSPFIKASAYALQDQPVVNAV 184
                      ++D++A ++  K +          K  F   FI   A  +   P     
Sbjct: 23  SVAQCTYNQTVQLDITAFLKTVKKN----------KHKFYPAFIHILARLMNAHPEFRMA 72

Query: 185 IEGTDIVYRDYVDISVGMGRNESNLPRWCFNGLLSGVLVLTEHLNGKYCVSSRPSYERHT 244
           ++  ++V  D V     +   +               L    H +          +    
Sbjct: 73  MKDGELVIWDSVHPCYTVFHEQ---------TETFSSLWSEYHDD-------FRQFLHIY 116

Query: 245 TGWACYDRLNWNLAIEDSDGGTFTISNGGVFGSLLGTPIINPPQSAILGMHGTFERPVAI 304
           +        N     +      F +S             +    +           PV  
Sbjct: 117 SQDVACYGENLAYFPKGFIENMFFVSANPWVSFTSFDLNVANMDNFFA--------PVFT 168

Query: 305 KGQVVV---KPMMYVALTYDHRLIDGREAVLFLQK-EAHLEAFQ 344
            G+      K +M +A+   H + DG      L + + + + +Q
Sbjct: 169 MGKYYTQGDKVLMPLAIQVHHAVCDGFHVGRMLNELQQYCDEWQ 212

>d1q23a_ c.43.1.1 (A:) Chloramphenicol acetyltransferase, CAT {Escherichia coli [TaxId: 562]} Length = 214

class: Alpha and beta proteins (a/b)
fold: CoA-dependent acyltransferases
superfamily: CoA-dependent acyltransferases
family: CAT-like
domain: Chloramphenicol acetyltransferase, CAT
species: Escherichia coli [TaxId: 562]

 Score = 86.5 bits (214), Expect = 3e-20
 Identities = 13/91 (14%), Positives = 23/91 (25%), Gaps = 2/91 (2%)

Query: 339 HLEAFQKKYGLKLGFMSPFIKASAYALQDQPVVNAVIEGTDIVYRDYVDISVAVATPKGL 398
                 KK   K  F   FI   A  +   P     ++  ++V  D V     V   +  
Sbjct: 39  AFLKTVKKNKHK--FYPAFIHILARLMNAHPEFRMAMKDGELVIWDSVHPCYTVFHEQTE 96

Query: 399 VVPVIRNVEAMNFADIELTIAALGEKARTGK 429
               + +    +F       +          
Sbjct: 97  TFSSLWSEYHDDFRQFLHIYSQDVACYGENL 127

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	431
d1scza_	233	Dihydrolipoamide succinyltransferase {Escherichia	100.0
d1dpba_	243	Dihydrolipoamide acetyltransferase {Azotobacter vi	100.0
d1b5sa_	242	Dihydrolipoamide acetyltransferase {Bacillus stear	100.0
d1q23a_	214	Chloramphenicol acetyltransferase, CAT {Escherichi	100.0
d3claa_	213	Chloramphenicol acetyltransferase, CAT {Escherichi	100.0
d1scza_	233	Dihydrolipoamide succinyltransferase {Escherichia	99.9
d1dpba_	243	Dihydrolipoamide acetyltransferase {Azotobacter vi	99.87
d1b5sa_	242	Dihydrolipoamide acetyltransferase {Bacillus stear	99.86
d3claa_	213	Chloramphenicol acetyltransferase, CAT {Escherichi	99.67
d1q23a_	214	Chloramphenicol acetyltransferase, CAT {Escherichi	99.63
d1w85i_	42	E3/E1 binding domain of dihydrolipoyl acetyltransf	94.82
d2cyua1	39	E3-binding domain of dihydrolipoamide succinyltran	94.66
d1qjoa_	80	Lipoyl domain of dihydrolipoamide acetyltransferas	94.49
d1iyua_	79	Lipoyl domain of dihydrolipoamide acetyltransferas	93.59
d1ghja_	79	Lipoyl domain of the 2-oxoglutarate dehydrogenase	93.03
d1gjxa_	81	Lipoyl domain of dihydrolipoamide acetyltransferas	92.97
d1k8ma_	87	Lipoyl domain of the mitochondrial branched-chain	92.27
d1pmra_	80	Lipoyl domain of the 2-oxoglutarate dehydrogenase	91.56
d1laba_	80	Lipoyl domain of dihydrolipoamide acetyltransferas	90.78
d1gjxa_	81	Lipoyl domain of dihydrolipoamide acetyltransferas	87.15
d1ghja_	79	Lipoyl domain of the 2-oxoglutarate dehydrogenase	86.52
d1y8ob1	102	Lipoyl domain of dihydrolipoamide acetyltransferas	86.17
d1laba_	80	Lipoyl domain of dihydrolipoamide acetyltransferas	84.6
d1k8ma_	87	Lipoyl domain of the mitochondrial branched-chain	84.06
d1qjoa_	80	Lipoyl domain of dihydrolipoamide acetyltransferas	83.85
d1dcza_	77	Biotin carboxyl carrier domain of transcarboxylase	83.69
d1bdoa_	80	Biotinyl domain of acetyl-CoA carboxylase {Escheri	83.08
d1iyua_	79	Lipoyl domain of dihydrolipoamide acetyltransferas	81.58
d1pmra_	80	Lipoyl domain of the 2-oxoglutarate dehydrogenase	81.49
d1dcza_	77	Biotin carboxyl carrier domain of transcarboxylase	81.14
d1y8ob1	102	Lipoyl domain of dihydrolipoamide acetyltransferas	80.77

>d1scza_ c.43.1.1 (A:) Dihydrolipoamide succinyltransferase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: CoA-dependent acyltransferases
superfamily: CoA-dependent acyltransferases
family: CAT-like
domain: Dihydrolipoamide succinyltransferase
species: Escherichia coli [TaxId: 562]

Probab=100.00  E-value=4.4e-63  Score=469.66  Aligned_cols=225  Identities=53%  Similarity=0.844  Sum_probs=219.1

Q ss_pred             CCceEEeccHHHHHHHHHHHHhcccceEEEEeeeccchHHHHHHHHHHHHHHhhcCCCCChhHHHHHHHHHHHhhCCccc
Q psy14345        103 RSEQRVKMNRMRQRIAQRLKEAQNVNAMLTTFNEIDMSAIIEFRKAHLEAFQKKYGLKLGFMSPFIKASAYALQDQPVVN  182 (431)
Q Consensus       103 ~~~~~vpls~~Rk~ia~~m~~S~~~iP~~t~~~evD~t~l~~~r~~l~~~~~~~~g~k~t~~~~~ikA~a~Al~~~P~~N  182 (431)
                      +.++++|++++||+||++|++||+++||||++.+||+|+|+++|+++++.+.++.|.|+|+++|++||++.||++||.+|
T Consensus         2 ~~ee~vpls~~rk~ia~~m~~S~~~iP~~~~~~evd~t~l~~~r~~~~~~~~~~~~~klt~~~~likA~a~aL~~~P~~N   81 (233)
T d1scza_           2 RSEKRVPMTRLRKRVAERLLEAKNSTAMLTTFNEVNMKPIMDLRKQYGEAFEKRHGIRLGFMSFYVKAVVEALKRYPEVN   81 (233)
T ss_dssp             CSCCCCCCCHHHHHHHHHHHHHHTTSCEEEEEEEEECHHHHHHHHHHHHHHHHHHSSCCCSHHHHHHHHHHHHHHCTTTT
T ss_pred             CCCcccCCcHHHHHHHHHHHHHhccCCeEEEEEEEEHHHHHHHHHHHHHhhHhhcCCccCHHHHHHHHHHHHHHhCchhh
Confidence            35678999999999999999999999999999999999999999999988888889999999999999999999999999


Q ss_pred             eeeeCCeeEecCcccEEEEEeecCCCCCCccCCcEEEEeecCCCccccccccCChhHHHHHHHHHHhhhhhcCCCCcccC
Q psy14345        183 AVIEGTDIVYRDYVDISVGMGRNESNLPRWCFNGLLSGVLVLTEHLNGKYCVSSRPSYERHTTGWACYDRLNWNLAIEDS  262 (431)
Q Consensus       183 ~~~~~~~i~~~~~v~igvav~~~~~~~~~~~~~gL~vpvi~~a~~~s~~l~~~~~~~i~~~~~~l~~~ar~~g~L~~~~~  262 (431)
                      ++|+++++++++++|||+||++     +    +||++|||+|+++++  +     .||++++++|+++|| +|+|+++|+
T Consensus        82 a~~~~~~i~~~~~vnIgiAv~~-----~----~GL~vPvI~~a~~~s--l-----~eia~~~~~l~~~ar-~~~L~~~d~  144 (233)
T d1scza_          82 ASIDGDDVVYHNYFDVSMAVST-----P----RGLVTPVLRDVDTLG--M-----ADIEKKIKELAVKGR-DGKLTVEDL  144 (233)
T ss_dssp             CEEETTEEECCSSCCEEECEEE-----T----TEEECCEETTGGGCC--H-----HHHHHHHHHHHHHTT-TTCCCHHHH
T ss_pred             eEEcCCeEEEeccceEEEEEEc-----C----CCeEEeEeeccccCC--H-----HHHHHHHHHHHHHhh-cCCCCHHHh
Confidence            9999999999999999999999     8    999999999999999  9     999999999999999 999999999


Q ss_pred             CCceEEEecCCCCCccceeeccCCCcceeeeccceeEEEeeeCCeEEEeeeeeeeeeeeeeeeehHHHHHHHHHHHhHhh
Q psy14345        263 DGGTFTISNGGVFGSLLGTPIINPPQSAILGMHGTFERPVAIKGQVVVKPMMYVALTYDHRLIDGREAVLFLQKEAHLEA  342 (431)
Q Consensus       263 ~ggTftiSn~G~~G~~~~~pii~ppq~ail~vG~i~~~pv~~~g~~~~~~~m~lslt~DHRvIDg~~a~~fl~~lk~l~~  342 (431)
                      +||||||||+|+||+++|+|||||||+||||+|+++++|++.+|+++++++|+++++||||+|||+.+++|++.++++.+
T Consensus       145 ~ggTfTISNlG~~g~~~~tpii~ppq~aIl~vG~i~~~pv~~~g~i~~r~~~~lsls~DHRviDGa~aa~Fl~~l~~~lE  224 (233)
T d1scza_         145 TGGNFTITNGGVFGSLMSTPIINPPQSAILGMHAIKDRPMAVNGQVEILPMMYLALSYDHRLIDGRESVGFLVTIKELLE  224 (233)
T ss_dssp             SCCSEEEEEGGGGTCCCCCCCCCTTCSEEEEEEEEEEEEEEETTEEEEEEEEEEEEEEETTTCCHHHHHHHHHHHHHHHH
T ss_pred             CCCcEEEEcCccccceeeeeecCCCCceEEecccceeeccccCCeEEEEEEeEEEEEhhcchhccHHHHHHHHHHHHHHh
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999998776


Q ss_pred             hh
Q psy14345        343 FQ  344 (431)
Q Consensus       343 ~~  344 (431)
                      ++
T Consensus       225 ~P  226 (233)
T d1scza_         225 DP  226 (233)
T ss_dssp             CT
T ss_pred             CH
Confidence            54

>d1dpba_ c.43.1.1 (A:) Dihydrolipoamide acetyltransferase {Azotobacter vinelandii [TaxId: 354]}

class: Alpha and beta proteins (a/b)
fold: CoA-dependent acyltransferases
superfamily: CoA-dependent acyltransferases
family: CAT-like
domain: Dihydrolipoamide acetyltransferase
species: Azotobacter vinelandii [TaxId: 354]

Probab=100.00  E-value=4.8e-61  Score=458.95  Aligned_cols=225  Identities=28%  Similarity=0.379  Sum_probs=214.5

Q ss_pred             CCCceEEeccHHHHHHHHHHHHhcccceEEEEeeeccchHHHHHHHHHHHHHHhhcCCCCChhHHHHHHHHHHHhhCCcc
Q psy14345        102 TRSEQRVKMNRMRQRIAQRLKEAQNVNAMLTTFNEIDMSAIIEFRKAHLEAFQKKYGLKLGFMSPFIKASAYALQDQPVV  181 (431)
Q Consensus       102 ~~~~~~vpls~~Rk~ia~~m~~S~~~iP~~t~~~evD~t~l~~~r~~l~~~~~~~~g~k~t~~~~~ikA~a~Al~~~P~~  181 (431)
                      .+..+++|++++||+||++|++||+++||||++.|+|+|+|+++|+++++.. ++.|.|+|+++|++||++.||++||.+
T Consensus        12 ~G~~e~vpls~~Rk~iA~~m~~S~~~iPh~~~~~evD~t~l~~~r~~l~~~~-~~~~~k~t~~~~iikA~a~Al~~~P~~   90 (243)
T d1dpba_          12 YGEIEEVPMTRLMQIGATNLHRSWLNVPHVTQFESADITELEAFRVAQKAVA-EKAGVKLTVLPLLLKACAYLLKELPDF   90 (243)
T ss_dssp             SSCCCCCCCCHHHHHHHHHHHHHHHHSCEEEEEEEEECHHHHHHHHHTHHHH-HHTTCCCCSHHHHHHHHHHHHHHSGGG
T ss_pred             CCCcEEEECcHHHHHHHHHHHHhhccCCEEEEEEEEecchHHHhhhhhhhhh-hhcCccccHHHHHHHHHHHHHHHhhhh
Confidence            3566789999999999999999999999999999999999999999887654 445899999999999999999999999


Q ss_pred             ceeeeC--CeeEecCcccEEEEEeecCCCCCCccCCcEEEEeecCCCccccccccCChhHHHHHHHHHHhhhhhcCCCCc
Q psy14345        182 NAVIEG--TDIVYRDYVDISVGMGRNESNLPRWCFNGLLSGVLVLTEHLNGKYCVSSRPSYERHTTGWACYDRLNWNLAI  259 (431)
Q Consensus       182 N~~~~~--~~i~~~~~v~igvav~~~~~~~~~~~~~gL~vpvi~~a~~~s~~l~~~~~~~i~~~~~~l~~~ar~~g~L~~  259 (431)
                      |++|++  ..++++.++|||+||++     +    +||++|||+++++++  +     .+|++++++|+++|| +|+|++
T Consensus        91 Ns~~~~~~~~~~~~~~inigiAv~~-----~----~GL~vPVI~~a~~~s--l-----~~i~~~~~~l~~~ar-~~~l~~  153 (243)
T d1dpba_          91 NSSLAPSGQALIRKKYVHIGFAVDT-----P----DGLLVPVIRNVDQKS--L-----LQLAAEAAELAEKAR-SKKLGA  153 (243)
T ss_dssp             GEEECTTSSCEEECSSCCEEECEEE-----T----TEEECCEETTGGGSC--H-----HHHHHHHHHHHHHHH-TTCCCG
T ss_pred             hhccccccccceeecccceeeeecc-----C----cceeeeeecchhhhh--H-----HHHHHHHHHHHHHhh-hccccc
Confidence            999975  47899999999999999     8    999999999999999  9     999999999999999 999999


Q ss_pred             ccCCCceEEEecCCCCCccceeeccCCCcceeeeccceeEEEeeeCCeEEEeeeeeeeeeeeeeeeehHHHHHHHHHHHh
Q psy14345        260 EDSDGGTFTISNGGVFGSLLGTPIINPPQSAILGMHGTFERPVAIKGQVVVKPMMYVALTYDHRLIDGREAVLFLQKEAH  339 (431)
Q Consensus       260 ~~~~ggTftiSn~G~~G~~~~~pii~ppq~ail~vG~i~~~pv~~~g~~~~~~~m~lslt~DHRvIDg~~a~~fl~~lk~  339 (431)
                      +|++||||||||+||||+++|+|||||||+||||+|++.++|++.+|+++++++|+++++||||++||+.+++||+.+++
T Consensus       154 ~d~~ggTfTiSNlG~~G~~~~tpiInppq~aIlgvG~i~~~pv~~~~~i~~r~~m~ltls~DHRvidGa~aa~FL~~l~~  233 (243)
T d1dpba_         154 DAMQGACFTISSLGHIGGTAFTPIVNAPEVAILGVSKASMQPVWDGKAFQPRLMLPLSLSYDCRVINGAAAARFTKRLGD  233 (243)
T ss_dssp             GGGSCCSEEEEECTTTCCSCCCCCCCTTSSEEEEECCCEEEEEECSSSEEEEEEEEEEEEEETTTSCHHHHHHHHHHHHH
T ss_pred             ccccCceeEEeccCCccceeEEeeeccccceeeecccceeeEEEECCEEEEEEEEEEEEEeecccccHHHHHHHHHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999998


Q ss_pred             Hhhhh
Q psy14345        340 LEAFQ  344 (431)
Q Consensus       340 l~~~~  344 (431)
                      +.+.+
T Consensus       234 ~lE~P  238 (243)
T d1dpba_         234 LLADI  238 (243)
T ss_dssp             HHHCG
T ss_pred             HHhCH
Confidence            77654

>d1b5sa_ c.43.1.1 (A:) Dihydrolipoamide acetyltransferase {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: CoA-dependent acyltransferases
superfamily: CoA-dependent acyltransferases
family: CAT-like
domain: Dihydrolipoamide acetyltransferase
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=100.00  E-value=3.7e-60  Score=453.08  Aligned_cols=225  Identities=29%  Similarity=0.451  Sum_probs=214.9

Q ss_pred             CCceEEeccHHHHHHHHHHHHhcccceEEEEeeeccchHHHHHHHHHHHHHHhhcCCCCChhHHHHHHHHHHHhhCCccc
Q psy14345        103 RSEQRVKMNRMRQRIAQRLKEAQNVNAMLTTFNEIDMSAIIEFRKAHLEAFQKKYGLKLGFMSPFIKASAYALQDQPVVN  182 (431)
Q Consensus       103 ~~~~~vpls~~Rk~ia~~m~~S~~~iP~~t~~~evD~t~l~~~r~~l~~~~~~~~g~k~t~~~~~ikA~a~Al~~~P~~N  182 (431)
                      ..++++|+++|||+||++|++||+++||+|++.|||+|+|+++|+++|+..+ +.|.|+|+++|++||++.||++||.+|
T Consensus        12 ~~~~~~~ls~~rk~ia~~m~~S~~~iPh~t~~~evDvt~l~~~r~~lk~~~~-~~g~klT~~~~likA~a~AL~~~P~~N   90 (242)
T d1b5sa_          12 FPETREKMSGIRRAIAKAMVHSKHTAPHVTLMDEADVTKLVAHRKKFKAIAA-EKGIKLTFLPYVVKALVSALREYPVLN   90 (242)
T ss_dssp             SSCCCCCCCHHHHHHHHHHHHHTTSSCCCEEEEEEECHHHHHHHHHTHHHHH-HTTCCCCSHHHHHHHHHHHHHHCGGGS
T ss_pred             CCceeeeCcHHHHHHHHHHHHhhccCCeEEEEEEEeehhHHHhhhhhhhhhh-hcccccchhhHHHHHHHHHHHHhhhhh
Confidence            3566789999999999999999999999999999999999999999987544 449999999999999999999999999


Q ss_pred             eeeeC--CeeEecCcccEEEEEeecCCCCCCccCCcEEEEeecCCCccccccccCChhHHHHHHHHHHhhhhhcCCCCcc
Q psy14345        183 AVIEG--TDIVYRDYVDISVGMGRNESNLPRWCFNGLLSGVLVLTEHLNGKYCVSSRPSYERHTTGWACYDRLNWNLAIE  260 (431)
Q Consensus       183 ~~~~~--~~i~~~~~v~igvav~~~~~~~~~~~~~gL~vpvi~~a~~~s~~l~~~~~~~i~~~~~~l~~~ar~~g~L~~~  260 (431)
                      ++|++  +.++++++|||||||++     +    +||++|||+++++++  +     .+|++++++++++|| +|+|+++
T Consensus        91 a~~~~~~~~i~~~~~v~igiAv~~-----~----~gL~vPvi~~a~~~s--l-----~~i~~~~~~l~~~ar-~gkl~~~  153 (242)
T d1b5sa_          91 TSIDDETEEIIQKHYYNIGIAADT-----D----RGLLVPVIKHADRKP--I-----FALAQEINELAEKAR-DGKLTPG  153 (242)
T ss_dssp             CCBCTTSSCBCCCSSCCEEECEEC-----S----SCEECCEETTGGGCC--H-----HHHHHHHHHHHHHHH-TTCCCGG
T ss_pred             eEEcCCCCEEEEeeeeEEEEEecC-----C----CceEeeeeccccccc--H-----HHHHHHHHHHHHHHH-cCCCChh
Confidence            99986  67999999999999999     8    999999999999999  9     999999999999999 9999999


Q ss_pred             cCCCceEEEecCCCCCccceeeccCCCcceeeeccceeEEEeeeCCeEEEeeeeeeeeeeeeeeeehHHHHHHHHHHHhH
Q psy14345        261 DSDGGTFTISNGGVFGSLLGTPIINPPQSAILGMHGTFERPVAIKGQVVVKPMMYVALTYDHRLIDGREAVLFLQKEAHL  340 (431)
Q Consensus       261 ~~~ggTftiSn~G~~G~~~~~pii~ppq~ail~vG~i~~~pv~~~g~~~~~~~m~lslt~DHRvIDg~~a~~fl~~lk~l  340 (431)
                      |++||||||||+|+||+++|+|||||||+||||+|+++++|++++|+++++++|+++++||||++||+++++|++.++++
T Consensus       154 dl~ggtftisnlG~~G~~~ftpii~~pq~ail~vG~i~~~pv~~dg~i~~r~~m~lslt~DHRviDGa~aa~Fl~~l~~~  233 (242)
T d1b5sa_         154 EMKGASCTITNIGSAGGQWFTPVINHPEVAILGIGRIAEKPIVRDGEIVAAPMLALSLSFDHRMIDGATAQKALNHIKRL  233 (242)
T ss_dssp             GGSCCSCEEEECTTTCCSCCCCCCCTTCCEEEEECCCEEEEEECSSSEEEEEEEEEEEEECTTTSCSHHHHHHHHHHHHH
T ss_pred             hccCcceEEeecCCCCccceecccccccceEEeccceEEEEEEECCeEEEEEEEEEEEEEEcchhChHHHHHHHHHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999987


Q ss_pred             hhhhh
Q psy14345        341 EAFQK  345 (431)
Q Consensus       341 ~~~~~  345 (431)
                      .+++.
T Consensus       234 lE~P~  238 (242)
T d1b5sa_         234 LSDPE  238 (242)
T ss_dssp             HHCGG
T ss_pred             HhCHH
Confidence            77653

>d1q23a_ c.43.1.1 (A:) Chloramphenicol acetyltransferase, CAT {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: CoA-dependent acyltransferases
superfamily: CoA-dependent acyltransferases
family: CAT-like
domain: Chloramphenicol acetyltransferase, CAT
species: Escherichia coli [TaxId: 562]

Probab=100.00  E-value=2.9e-36  Score=282.19  Aligned_cols=200  Identities=13%  Similarity=0.089  Sum_probs=175.3

Q ss_pred             ceEEeccH-HHHHHHHHHHHhcccceEEEEeeeccchHHHHHHHHHHHHHHhhcCCCCChhHHHHHHHHHHHhhCCccce
Q psy14345        105 EQRVKMNR-MRQRIAQRLKEAQNVNAMLTTFNEIDMSAIIEFRKAHLEAFQKKYGLKLGFMSPFIKASAYALQDQPVVNA  183 (431)
Q Consensus       105 ~~~vpls~-~Rk~ia~~m~~S~~~iP~~t~~~evD~t~l~~~r~~l~~~~~~~~g~k~t~~~~~ikA~a~Al~~~P~~N~  183 (431)
                      ++.+.++. -||..-+..  ++...|||+++++||+|+|+++||+          .++||+++++||+++||++||+||+
T Consensus         4 ~k~ID~~~W~R~~~f~~f--~~~~~P~f~it~~vDvT~l~~~~K~----------~~~sf~~~~~~av~~Al~~~P~~n~   71 (214)
T d1q23a_           4 YTTVDISQWHRKEHFEAF--QSVAQCTYNQTVQLDITAFLKTVKK----------NKHKFYPAFIHILARLMNAHPEFRM   71 (214)
T ss_dssp             EEECCGGGCTTHHHHHHH--TTTTCEEEEEEEEEECHHHHHHHHH----------TTCCHHHHHHHHHHHHHTTCGGGSE
T ss_pred             ceEeccccCcCHHHHHHH--hCCCCCeEEEEEEEcHHHHHHHHHH----------cCCCcHHHHHHHHHHHHHhChHhhe
Confidence            55666666 366555554  3357999999999999999998876          3689999999999999999999999


Q ss_pred             eeeCCeeEecCcccEEEEEeecCCCCCCccCCcEEEEeecCCCccccccccCChhHHHHHHHHHHhhhhhcC-CCCcccC
Q psy14345        184 VIEGTDIVYRDYVDISVGMGRNESNLPRWCFNGLLSGVLVLTEHLNGKYCVSSRPSYERHTTGWACYDRLNW-NLAIEDS  262 (431)
Q Consensus       184 ~~~~~~i~~~~~v~igvav~~~~~~~~~~~~~gL~vpvi~~a~~~s~~l~~~~~~~i~~~~~~l~~~ar~~g-~L~~~~~  262 (431)
                      +|+++++++++++|+|+||++     +    +||++|+|++++.++  +     .+|++++.+++.+++ ++ +|.++++
T Consensus        72 ~~~~~~i~~~~~i~i~iav~~-----~----~gl~v~~i~~~~~~~--~-----~ef~~~~~~~~~~~~-~~~~l~~~~~  134 (214)
T d1q23a_          72 AMKDGELVIWDSVHPCYTVFH-----E----QTETFSSLWSEYHDD--F-----RQFLHIYSQDVACYG-ENLAYFPKGF  134 (214)
T ss_dssp             EEETTEEEEESCCEEEEEEEE-----T----TTTEEEEEECCCCSS--H-----HHHHHHHHHHHHHHT-TCCSSSTTCC
T ss_pred             EEcCCceeEcCccCeEEEEEc-----C----CCeEEeEEecCchhh--H-----HHHHHHHHHHHHHHH-hCCCCCCccc
Confidence            999999999999999999999     8    999999999999999  9     999999999999998 65 5999999


Q ss_pred             CCceEEEecCCCCCccceeeccCCCc---ceeeeccceeEEEeeeCCeEEEeeeeeeeeeeeeeeeehHHHHHHHHHHHh
Q psy14345        263 DGGTFTISNGGVFGSLLGTPIINPPQ---SAILGMHGTFERPVAIKGQVVVKPMMYVALTYDHRLIDGREAVLFLQKEAH  339 (431)
Q Consensus       263 ~ggTftiSn~G~~G~~~~~pii~ppq---~ail~vG~i~~~pv~~~g~~~~~~~m~lslt~DHRvIDg~~a~~fl~~lk~  339 (431)
                      +|+||||||+||+|.+++++.+++++   +.++++|++..+    +|    +.+|++++++|||++||..+++|++.+++
T Consensus       135 ~~~tftiSnlg~~~ft~~~~~~~~~~~~~vpii~~Gk~~~~----~~----r~~mplsls~dHrvvDG~~~a~Fl~~lq~  206 (214)
T d1q23a_         135 IENMFFVSANPWVSFTSFDLNVANMDNFFAPVFTMGKYYTQ----GD----KVLMPLAIQVHHAVCDGFHVGRMLNELQQ  206 (214)
T ss_dssp             CSSEEEEEECTTCCCSEEEEEESCCTTCCSCEEEECCCEEE----TT----EEEEEEEEEEETTTCCHHHHHHHHHHHHH
T ss_pred             cCCEEEEEcCCCccccCccCCCCCCccceeeEEEecceEEE----CC----EEEEEEEEEecccccchHHHHHHHHHHHH
Confidence            99999999999999998888777654   458888876543    55    45899999999999999999999999987


Q ss_pred             Hh
Q psy14345        340 LE  341 (431)
Q Consensus       340 l~  341 (431)
                      +.
T Consensus       207 ~l  208 (214)
T d1q23a_         207 YC  208 (214)
T ss_dssp             HH
T ss_pred             HH
Confidence            53

>d3claa_ c.43.1.1 (A:) Chloramphenicol acetyltransferase, CAT {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: CoA-dependent acyltransferases
superfamily: CoA-dependent acyltransferases
family: CAT-like
domain: Chloramphenicol acetyltransferase, CAT
species: Escherichia coli [TaxId: 562]

Probab=100.00  E-value=2.4e-34  Score=268.84  Aligned_cols=200  Identities=11%  Similarity=0.037  Sum_probs=164.6

Q ss_pred             EEeccH-HHHHHHHHHHHhcccceEEEEeeeccchHHHHHHHHHHHHHHhhcCCCCChhHHHHHHHHHHHhhCCccceee
Q psy14345        107 RVKMNR-MRQRIAQRLKEAQNVNAMLTTFNEIDMSAIIEFRKAHLEAFQKKYGLKLGFMSPFIKASAYALQDQPVVNAVI  185 (431)
Q Consensus       107 ~vpls~-~Rk~ia~~m~~S~~~iP~~t~~~evD~t~l~~~r~~l~~~~~~~~g~k~t~~~~~ikA~a~Al~~~P~~N~~~  185 (431)
                      .+.++. -||...+..  ++.+.|||+++.+||+|+|++++|+          .++||+++++||+++||++||++|++|
T Consensus         5 ~id~~~w~Rk~~f~~f--~~~~~P~~~~t~~vDvT~l~~~~K~----------~~~sf~~~~~~a~~~Al~~~P~~n~~~   72 (213)
T d3claa_           5 KFDVKNWVRREHFEFY--RHRLPCGFSLTSKIDITTLKKSLDD----------SAYKFYPVMIYLIAQAVNQFDELRMAI   72 (213)
T ss_dssp             ECCCTTCTTHHHHHHH--HHTSCCEEEEEEEEECHHHHHHHHT----------SSCCHHHHHHHHHHHHHTTCGGGSEEE
T ss_pred             eeCcccCccHHHHHHH--hCCCCCEEEEEEEEeHHHHHHHHHH----------cCCCeeHHHHHHHHHHHHhChHhhhEe
Confidence            344443 466666665  3357999999999999999998865          468999999999999999999999999


Q ss_pred             eCCeeEecCcccEEEEEeecCCCCCCccCCcEEEEeecCCCccccccccCChhHHHHHHHHHHhhhhhcCC-CCcccCCC
Q psy14345        186 EGTDIVYRDYVDISVGMGRNESNLPRWCFNGLLSGVLVLTEHLNGKYCVSSRPSYERHTTGWACYDRLNWN-LAIEDSDG  264 (431)
Q Consensus       186 ~~~~i~~~~~v~igvav~~~~~~~~~~~~~gL~vpvi~~a~~~s~~l~~~~~~~i~~~~~~l~~~ar~~g~-L~~~~~~g  264 (431)
                      +++++++++++|+|+||++     +    +||++|+|++++.++  +     .+|++++.+++++|| +++ +.+++..|
T Consensus        73 ~~~~i~~~~~i~~~~aV~~-----~----~gl~vp~i~~~~~~~--l-----~~f~~~~~~~~~~ar-~~~~~~~~~~~~  135 (213)
T d3claa_          73 KDDELIVWDSVDPQFTVFH-----Q----ETETFSALSCPYSSD--I-----DQFMVNYLSVMERYK-SDTKLFPQGVTP  135 (213)
T ss_dssp             ETTEEEEESCCEEEEEEEE-----T----TTTEEEEEECCCCSS--H-----HHHHHHHHHHHHHHT-TCCSSSTTSSCC
T ss_pred             ccCeEEEecccceEEEEEc-----C----CCeEEeeEecCCCCC--H-----HHHHHHHHHHHHHHH-hCCCCCccccCC
Confidence            9999999999999999999     8    999999999999999  9     999999999999999 765 66666554


Q ss_pred             -ceEEEecCCCCCccceeeccCCCcceeeeccceeEEEeeeCCeEEE---eeeeeeeeeeeeeeeehHHHHHHHHHHHhH
Q psy14345        265 -GTFTISNGGVFGSLLGTPIINPPQSAILGMHGTFERPVAIKGQVVV---KPMMYVALTYDHRLIDGREAVLFLQKEAHL  340 (431)
Q Consensus       265 -gTftiSn~G~~G~~~~~pii~ppq~ail~vG~i~~~pv~~~g~~~~---~~~m~lslt~DHRvIDg~~a~~fl~~lk~l  340 (431)
                       ++|++|++||+   .|++++++|+.....     ..|++..|++..   +.+|++++++|||++||..+++|++.++++
T Consensus       136 ~~~~~is~l~~~---~Ft~i~~~~~~~~~~-----~~Pii~~Gk~~~~~~r~~m~lsls~dHrviDG~~aa~Fl~~lk~~  207 (213)
T d3claa_         136 ENHLNISALPWV---NFDSFNLNVANFTDY-----FAPIITMAKYQQEGDRLLLPLSVQVHHAVCDGFHVARFINRLQEL  207 (213)
T ss_dssp             SSEEEEEEETTC---CCSCCCCCCSCCTTC-----CSCEEEEECCEEETTEEEEEEEEEEETTTCCHHHHHHHHHHHHHH
T ss_pred             CcEEEeeccCce---EeecccCCcccCccc-----cccEEecCccEEECCEEEEEEEEEecccccccHHHHHHHHHHHHH
Confidence             35666666555   577888988765322     224444554433   678999999999999999999999999876


Q ss_pred             hhh
Q psy14345        341 EAF  343 (431)
Q Consensus       341 ~~~  343 (431)
                      .+.
T Consensus       208 le~  210 (213)
T d3claa_         208 CNS  210 (213)
T ss_dssp             HTS
T ss_pred             HhC
Confidence            543

>d1scza_ c.43.1.1 (A:) Dihydrolipoamide succinyltransferase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: CoA-dependent acyltransferases
superfamily: CoA-dependent acyltransferases
family: CAT-like
domain: Dihydrolipoamide succinyltransferase
species: Escherichia coli [TaxId: 562]

Probab=99.90  E-value=2.3e-24  Score=202.85  Aligned_cols=106  Identities=43%  Similarity=0.733  Sum_probs=98.4

Q ss_pred             eeehHHHHHHHHHHHhHhhhhhhcccccCCcchHHHHHHHHhhcCCccceeeeCCeeEEcCCcceEEEEecCCCeeecee
Q psy14345        324 LIDGREAVLFLQKEAHLEAFQKKYGLKLGFMSPFIKASAYALQDQPVVNAVIEGTDIVYRDYVDISVAVATPKGLVVPVI  403 (431)
Q Consensus       324 vIDg~~a~~fl~~lk~l~~~~~~~~~klt~~~~~~ka~~~aL~~~P~~Na~~~~~~i~~~~~vnigvAV~~~~GL~vPvi  403 (431)
                      .||.+....|++.+++.  ..++.|.|+|+++|++||++.||++||.+|++|+++.|++++++|||+||++++||+||||
T Consensus        35 evd~t~l~~~r~~~~~~--~~~~~~~klt~~~~likA~a~aL~~~P~~Na~~~~~~i~~~~~vnIgiAv~~~~GL~vPvI  112 (233)
T d1scza_          35 EVNMKPIMDLRKQYGEA--FEKRHGIRLGFMSFYVKAVVEALKRYPEVNASIDGDDVVYHNYFDVSMAVSTPRGLVTPVL  112 (233)
T ss_dssp             EEECHHHHHHHHHHHHH--HHHHHSSCCCSHHHHHHHHHHHHHHCTTTTCEEETTEEECCSSCCEEECEEETTEEECCEE
T ss_pred             EEEHHHHHHHHHHHHHh--hHhhcCCccCHHHHHHHHHHHHHHhCchhheEEcCCeEEEeccceEEEEEEcCCCeEEeEe
Confidence            36788999999887643  3345689999999999999999999999999999999999999999999999999999999


Q ss_pred             cCcccCCHHHHHHHHHHHHHHHHcCCCC
Q psy14345        404 RNVEAMNFADIELTIAALGEKARTGKYT  431 (431)
Q Consensus       404 ~~a~~~~l~~ia~~~~~l~~~ar~g~L~  431 (431)
                      ||||++|+.||++++++|++|+|+|+|+
T Consensus       113 ~~a~~~sl~eia~~~~~l~~~ar~~~L~  140 (233)
T d1scza_         113 RDVDTLGMADIEKKIKELAVKGRDGKLT  140 (233)
T ss_dssp             TTGGGCCHHHHHHHHHHHHHHTTTTCCC
T ss_pred             eccccCCHHHHHHHHHHHHHHhhcCCCC
Confidence            9999999999999999999999999985

>d1dpba_ c.43.1.1 (A:) Dihydrolipoamide acetyltransferase {Azotobacter vinelandii [TaxId: 354]}

class: Alpha and beta proteins (a/b)
fold: CoA-dependent acyltransferases
superfamily: CoA-dependent acyltransferases
family: CAT-like
domain: Dihydrolipoamide acetyltransferase
species: Azotobacter vinelandii [TaxId: 354]

Probab=99.87  E-value=1.3e-22  Score=192.19  Aligned_cols=105  Identities=35%  Similarity=0.518  Sum_probs=94.9

Q ss_pred             eeehHHHHHHHHHHHhHhhhhhhcccccCCcchHHHHHHHHhhcCCccceeeeC--CeeEEcCCcceEEEEecCCCeeec
Q psy14345        324 LIDGREAVLFLQKEAHLEAFQKKYGLKLGFMSPFIKASAYALQDQPVVNAVIEG--TDIVYRDYVDISVAVATPKGLVVP  401 (431)
Q Consensus       324 vIDg~~a~~fl~~lk~l~~~~~~~~~klt~~~~~~ka~~~aL~~~P~~Na~~~~--~~i~~~~~vnigvAV~~~~GL~vP  401 (431)
                      .+|.+.+..+++.+++   ..++.|.|+|+++|++||++.||++||.+|++|++  ..++++.++|||+||++++||+||
T Consensus        46 evD~t~l~~~r~~l~~---~~~~~~~k~t~~~~iikA~a~Al~~~P~~Ns~~~~~~~~~~~~~~inigiAv~~~~GL~vP  122 (243)
T d1dpba_          46 SADITELEAFRVAQKA---VAEKAGVKLTVLPLLLKACAYLLKELPDFNSSLAPSGQALIRKKYVHIGFAVDTPDGLLVP  122 (243)
T ss_dssp             EEECHHHHHHHHHTHH---HHHHTTCCCCSHHHHHHHHHHHHHHSGGGGEEECTTSSCEEECSSCCEEECEEETTEEECC
T ss_pred             EEecchHHHhhhhhhh---hhhhcCccccHHHHHHHHHHHHHHHhhhhhhccccccccceeecccceeeeeccCcceeee
Confidence            3777888888776654   23457899999999999999999999999999965  478899999999999999999999


Q ss_pred             eecCcccCCHHHHHHHHHHHHHHHHcCCCC
Q psy14345        402 VIRNVEAMNFADIELTIAALGEKARTGKYT  431 (431)
Q Consensus       402 vi~~a~~~~l~~ia~~~~~l~~~ar~g~L~  431 (431)
                      ||||||+|||.||++++++|+++||+|+|+
T Consensus       123 VI~~a~~~sl~~i~~~~~~l~~~ar~~~l~  152 (243)
T d1dpba_         123 VIRNVDQKSLLQLAAEAAELAEKARSKKLG  152 (243)
T ss_dssp             EETTGGGSCHHHHHHHHHHHHHHHHTTCCC
T ss_pred             eecchhhhhHHHHHHHHHHHHHHhhhcccc
Confidence            999999999999999999999999999985

>d1b5sa_ c.43.1.1 (A:) Dihydrolipoamide acetyltransferase {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: CoA-dependent acyltransferases
superfamily: CoA-dependent acyltransferases
family: CAT-like
domain: Dihydrolipoamide acetyltransferase
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=99.86  E-value=3.7e-22  Score=188.99  Aligned_cols=105  Identities=33%  Similarity=0.510  Sum_probs=96.5

Q ss_pred             eeehHHHHHHHHHHHhHhhhhhhcccccCCcchHHHHHHHHhhcCCccceeeeC--CeeEEcCCcceEEEEecCCCeeec
Q psy14345        324 LIDGREAVLFLQKEAHLEAFQKKYGLKLGFMSPFIKASAYALQDQPVVNAVIEG--TDIVYRDYVDISVAVATPKGLVVP  401 (431)
Q Consensus       324 vIDg~~a~~fl~~lk~l~~~~~~~~~klt~~~~~~ka~~~aL~~~P~~Na~~~~--~~i~~~~~vnigvAV~~~~GL~vP  401 (431)
                      .+|.+.+..|+++++..   .++.|.|+|+++|++||++.||++||.+|++|++  +.+.++.+||||+||++++||+||
T Consensus        45 evDvt~l~~~r~~lk~~---~~~~g~klT~~~~likA~a~AL~~~P~~Na~~~~~~~~i~~~~~v~igiAv~~~~gL~vP  121 (242)
T d1b5sa_          45 EADVTKLVAHRKKFKAI---AAEKGIKLTFLPYVVKALVSALREYPVLNTSIDDETEEIIQKHYYNIGIAADTDRGLLVP  121 (242)
T ss_dssp             EEECHHHHHHHHHTHHH---HHHTTCCCCSHHHHHHHHHHHHHHCGGGSCCBCTTSSCBCCCSSCCEEECEECSSCEECC
T ss_pred             EEeehhHHHhhhhhhhh---hhhcccccchhhHHHHHHHHHHHHhhhhheEEcCCCCEEEEeeeeEEEEEecCCCceEee
Confidence            37889999999887742   3456899999999999999999999999999976  678999999999999999999999


Q ss_pred             eecCcccCCHHHHHHHHHHHHHHHHcCCCC
Q psy14345        402 VIRNVEAMNFADIELTIAALGEKARTGKYT  431 (431)
Q Consensus       402 vi~~a~~~~l~~ia~~~~~l~~~ar~g~L~  431 (431)
                      ||+|||++|+.||+++++++++++|+|+|+
T Consensus       122 vi~~a~~~sl~~i~~~~~~l~~~ar~gkl~  151 (242)
T d1b5sa_         122 VIKHADRKPIFALAQEINELAEKARDGKLT  151 (242)
T ss_dssp             EETTGGGCCHHHHHHHHHHHHHHHHTTCCC
T ss_pred             eecccccccHHHHHHHHHHHHHHHHcCCCC
Confidence            999999999999999999999999999985

>d3claa_ c.43.1.1 (A:) Chloramphenicol acetyltransferase, CAT {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: CoA-dependent acyltransferases
superfamily: CoA-dependent acyltransferases
family: CAT-like
domain: Chloramphenicol acetyltransferase, CAT
species: Escherichia coli [TaxId: 562]

Probab=99.67  E-value=7.8e-17  Score=149.18  Aligned_cols=102  Identities=12%  Similarity=0.065  Sum_probs=90.0

Q ss_pred             eeeeeeeeeeeeeeeehHHHHHHHHHHHhHhhhhhhcccccCCcchHHHHHHHHhhcCCccceeeeCCeeEEcCCcceEE
Q psy14345        311 KPMMYVALTYDHRLIDGREAVLFLQKEAHLEAFQKKYGLKLGFMSPFIKASAYALQDQPVVNAVIEGTDIVYRDYVDISV  390 (431)
Q Consensus       311 ~~~m~lslt~DHRvIDg~~a~~fl~~lk~l~~~~~~~~~klt~~~~~~ka~~~aL~~~P~~Na~~~~~~i~~~~~vnigv  390 (431)
                      .|+++++..+     |.+.+.+++   |         ..++|++++++||+++||++||++|++|+++++++++++|+|+
T Consensus        25 ~P~~~~t~~v-----DvT~l~~~~---K---------~~~~sf~~~~~~a~~~Al~~~P~~n~~~~~~~i~~~~~i~~~~   87 (213)
T d3claa_          25 PCGFSLTSKI-----DITTLKKSL---D---------DSAYKFYPVMIYLIAQAVNQFDELRMAIKDDELIVWDSVDPQF   87 (213)
T ss_dssp             CCEEEEEEEE-----ECHHHHHHH---H---------TSSCCHHHHHHHHHHHHHTTCGGGSEEEETTEEEEESCCEEEE
T ss_pred             CCEEEEEEEE-----eHHHHHHHH---H---------HcCCCeeHHHHHHHHHHHHhChHhhhEeccCeEEEecccceEE
Confidence            4677777765     455554333   2         1378999999999999999999999999999999999999999


Q ss_pred             EEecCCCeeeceecCcccCCHHHHHHHHHHHHHHHHcCC
Q psy14345        391 AVATPKGLVVPVIRNVEAMNFADIELTIAALGEKARTGK  429 (431)
Q Consensus       391 AV~~~~GL~vPvi~~a~~~~l~~ia~~~~~l~~~ar~g~  429 (431)
                      ||++++||++|||++++++++.+++++++++++++|+|+
T Consensus        88 aV~~~~gl~vp~i~~~~~~~l~~f~~~~~~~~~~ar~~~  126 (213)
T d3claa_          88 TVFHQETETFSALSCPYSSDIDQFMVNYLSVMERYKSDT  126 (213)
T ss_dssp             EEEETTTTEEEEEECCCCSSHHHHHHHHHHHHHHHTTCC
T ss_pred             EEEcCCCeEEeeEecCCCCCHHHHHHHHHHHHHHHHhCC
Confidence            999999999999999999999999999999999999976

>d1q23a_ c.43.1.1 (A:) Chloramphenicol acetyltransferase, CAT {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: CoA-dependent acyltransferases
superfamily: CoA-dependent acyltransferases
family: CAT-like
domain: Chloramphenicol acetyltransferase, CAT
species: Escherichia coli [TaxId: 562]

Probab=99.63  E-value=4.9e-16  Score=143.85  Aligned_cols=102  Identities=13%  Similarity=0.063  Sum_probs=90.0

Q ss_pred             eeeeeeeeeeeeeeeehHHHHHHHHHHHhHhhhhhhcccccCCcchHHHHHHHHhhcCCccceeeeCCeeEEcCCcceEE
Q psy14345        311 KPMMYVALTYDHRLIDGREAVLFLQKEAHLEAFQKKYGLKLGFMSPFIKASAYALQDQPVVNAVIEGTDIVYRDYVDISV  390 (431)
Q Consensus       311 ~~~m~lslt~DHRvIDg~~a~~fl~~lk~l~~~~~~~~~klt~~~~~~ka~~~aL~~~P~~Na~~~~~~i~~~~~vnigv  390 (431)
                      .|+++++..     ||.+.+.+++++            .++|++++++||+++||++||++|.+|+++++++++.+|+|+
T Consensus        26 ~P~f~it~~-----vDvT~l~~~~K~------------~~~sf~~~~~~av~~Al~~~P~~n~~~~~~~i~~~~~i~i~i   88 (214)
T d1q23a_          26 QCTYNQTVQ-----LDITAFLKTVKK------------NKHKFYPAFIHILARLMNAHPEFRMAMKDGELVIWDSVHPCY   88 (214)
T ss_dssp             CEEEEEEEE-----EECHHHHHHHHH------------TTCCHHHHHHHHHHHHHTTCGGGSEEEETTEEEEESCCEEEE
T ss_pred             CCeEEEEEE-----EcHHHHHHHHHH------------cCCCcHHHHHHHHHHHHHhChHhheEEcCCceeEcCccCeEE
Confidence            366777666     456666554432            268999999999999999999999999999999999999999


Q ss_pred             EEecCCCeeeceecCcccCCHHHHHHHHHHHHHHHHcCC
Q psy14345        391 AVATPKGLVVPVIRNVEAMNFADIELTIAALGEKARTGK  429 (431)
Q Consensus       391 AV~~~~GL~vPvi~~a~~~~l~~ia~~~~~l~~~ar~g~  429 (431)
                      ||++++||++|||++++++++.|+++++.++++++++|+
T Consensus        89 av~~~~gl~v~~i~~~~~~~~~ef~~~~~~~~~~~~~~~  127 (214)
T d1q23a_          89 TVFHEQTETFSSLWSEYHDDFRQFLHIYSQDVACYGENL  127 (214)
T ss_dssp             EEEETTTTEEEEEECCCCSSHHHHHHHHHHHHHHHTTCC
T ss_pred             EEEcCCCeEEeEEecCchhhHHHHHHHHHHHHHHHHhCC
Confidence            999999999999999999999999999999999999875

>d1w85i_ a.9.1.1 (I:) E3/E1 binding domain of dihydrolipoyl acetyltransferase {Bacillus stearothermophilus [TaxId: 1422]}

class: All alpha proteins
fold: Peripheral subunit-binding domain of 2-oxo acid dehydrogenase complex
superfamily: Peripheral subunit-binding domain of 2-oxo acid dehydrogenase complex
family: Peripheral subunit-binding domain of 2-oxo acid dehydrogenase complex
domain: E3/E1 binding domain of dihydrolipoyl acetyltransferase
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=94.82  E-value=0.0028  Score=41.86  Aligned_cols=25  Identities=12%  Similarity=0.137  Sum_probs=21.3

Q ss_pred             CCCCCC-chhhhcCCCccccCCCCCC
Q psy14345         70 CSSPSP-SLCYSSAIEAATVKLPPAD   94 (431)
Q Consensus        70 ~~sp~~-~lA~e~gIdl~~v~gtg~d   94 (431)
                      .++|.+ +||+|+|||++.++|||.+
T Consensus         3 ~asP~arkla~e~gidl~~i~GTG~~   28 (42)
T d1w85i_           3 IAMPSVRKYAREKGVDIRLVQGTGKN   28 (42)
T ss_dssp             CCCHHHHHHHHHTTCCTTTSCCCSGG
T ss_pred             ccCHHHHHHHHHcCCCHHHCccCCCC
Confidence            356666 9999999999999999854

>d2cyua1 a.9.1.1 (A:2-40) E3-binding domain of dihydrolipoamide succinyltransferase {Escherichia coli [TaxId: 562]}

class: All alpha proteins
fold: Peripheral subunit-binding domain of 2-oxo acid dehydrogenase complex
superfamily: Peripheral subunit-binding domain of 2-oxo acid dehydrogenase complex
family: Peripheral subunit-binding domain of 2-oxo acid dehydrogenase complex
domain: E3-binding domain of dihydrolipoamide succinyltransferase
species: Escherichia coli [TaxId: 562]

Probab=94.66  E-value=0.0054  Score=39.81  Aligned_cols=24  Identities=21%  Similarity=0.234  Sum_probs=20.6

Q ss_pred             CCCC-chhhhcCCCccccCCCCCCC
Q psy14345         72 SPSP-SLCYSSAIEAATVKLPPADP   95 (431)
Q Consensus        72 sp~~-~lA~e~gIdl~~v~gtg~dv   95 (431)
                      ||.+ ++|+|+|||++.++|||.+.
T Consensus         2 SP~arkla~e~gidl~~i~GtG~~G   26 (39)
T d2cyua1           2 SPAIRRLLAEHNLDASAIKGTGVGG   26 (39)
T ss_dssp             CCTHHHHHHHHTCCGGGSCCCSSSS
T ss_pred             CHHHHHHHHHcCCCHHHCcCCCCCC
Confidence            4566 99999999999999999654

>d1qjoa_ b.84.1.1 (A:) Lipoyl domain of dihydrolipoamide acetyltransferase {Escherichia coli [TaxId: 562]}

class: All beta proteins
fold: Barrel-sandwich hybrid
superfamily: Single hybrid motif
family: Biotinyl/lipoyl-carrier proteins and domains
domain: Lipoyl domain of dihydrolipoamide acetyltransferase
species: Escherichia coli [TaxId: 562]

Probab=94.49  E-value=0.013  Score=43.98  Aligned_cols=25  Identities=20%  Similarity=0.193  Sum_probs=16.9

Q ss_pred             eeeeeecCCCCeEecCceeEEEecC
Q psy14345         13 FLLLASLEDGATVKAGQQLFKIKPT   37 (431)
Q Consensus        13 ~~l~~~~~eGd~v~VG~~L~~Ie~~   37 (431)
                      -++.+.+++||.|+.|++|+.||+.
T Consensus        16 ~v~~~~v~~Gd~V~~g~~l~~iEt~   40 (80)
T d1qjoa_          16 EVTEVMVKVGDKVAAEQSLITVEGD   40 (80)
T ss_dssp             EEEECCCCTTCEECBTSEEEEEESS
T ss_pred             EEEEEEeCCCCEECCCCEEEEEEcC
Confidence            3445577777777777777777744

>d1iyua_ b.84.1.1 (A:) Lipoyl domain of dihydrolipoamide acetyltransferase {Azotobacter vinelandii [TaxId: 354]}

class: All beta proteins
fold: Barrel-sandwich hybrid
superfamily: Single hybrid motif
family: Biotinyl/lipoyl-carrier proteins and domains
domain: Lipoyl domain of dihydrolipoamide acetyltransferase
species: Azotobacter vinelandii [TaxId: 354]

Probab=93.59  E-value=0.036  Score=41.29  Aligned_cols=30  Identities=20%  Similarity=0.398  Sum_probs=18.6

Q ss_pred             cccceeeeeecCCCCeEecCceeEEEecCC
Q psy14345          9 NNKKFLLLASLEDGATVKAGQQLFKIKPTA   38 (431)
Q Consensus         9 ~~~~~~l~~~~~eGd~v~VG~~L~~Ie~~~   38 (431)
                      ..+-.+..+++++||+|++|++|+.|++.+
T Consensus        47 ~~~G~v~~i~v~~G~~V~~G~~l~~ie~~~   76 (79)
T d1iyua_          47 PKAGVVKSVSVKLGDKLKEGDAIIELEPAA   76 (79)
T ss_dssp             SSSSEEEEESCCTTCEEETTSEEEEEECCC
T ss_pred             ccccEEEEEeeCCCCEECCCCEEEEEecCc
Confidence            334455556677777777777777776443

>d1ghja_ b.84.1.1 (A:) Lipoyl domain of the 2-oxoglutarate dehydrogenase complex {Azotobacter vinelandii [TaxId: 354]}

class: All beta proteins
fold: Barrel-sandwich hybrid
superfamily: Single hybrid motif
family: Biotinyl/lipoyl-carrier proteins and domains
domain: Lipoyl domain of the 2-oxoglutarate dehydrogenase complex
species: Azotobacter vinelandii [TaxId: 354]

Probab=93.03  E-value=0.037  Score=41.24  Aligned_cols=26  Identities=15%  Similarity=0.166  Sum_probs=17.6

Q ss_pred             ccceeeeeecCCCCeEecCceeEEEe
Q psy14345         10 NKKFLLLASLEDGATVKAGQQLFKIK   35 (431)
Q Consensus        10 ~~~~~l~~~~~eGd~v~VG~~L~~Ie   35 (431)
                      .+..++..++++||+|+.|++||.||
T Consensus        14 ~eg~i~~w~v~~Gd~V~~gd~l~~vE   39 (79)
T d1ghja_          14 ADGTVATWHKKPGEAVKRDELIVDIE   39 (79)
T ss_dssp             SCEEECCCSSCTTSEECSSCEEEEEE
T ss_pred             cEEEEEEEEcCCCCEEeeCccEEEEE
Confidence            34455555777777777777777777

>d1gjxa_ b.84.1.1 (A:) Lipoyl domain of dihydrolipoamide acetyltransferase {Neisseria meningitidis [TaxId: 487]}

class: All beta proteins
fold: Barrel-sandwich hybrid
superfamily: Single hybrid motif
family: Biotinyl/lipoyl-carrier proteins and domains
domain: Lipoyl domain of dihydrolipoamide acetyltransferase
species: Neisseria meningitidis [TaxId: 487]

Probab=92.97  E-value=0.021  Score=42.82  Aligned_cols=31  Identities=10%  Similarity=0.234  Sum_probs=23.9

Q ss_pred             ccccceeeeeecCCCCeEecCceeEEEecCC
Q psy14345          8 QNNKKFLLLASLEDGATVKAGQQLFKIKPTA   38 (431)
Q Consensus         8 ~~~~~~~l~~~~~eGd~v~VG~~L~~Ie~~~   38 (431)
                      ..++.-++..++++||.|+.|++||.||+..
T Consensus        12 ~~~~~~v~~w~v~~Gd~V~~gd~l~~iEt~K   42 (81)
T d1gjxa_          12 GHENVDIIAVEVNVGDTIAVDDTLITLETDK   42 (81)
T ss_dssp             SCSSEEEEEECCCSSCBCCSSCCCEEEECSS
T ss_pred             CCcEEEEEEEEeCCCCEECCCCEEEEEEcCC
Confidence            3344556677999999999999999999553

>d1k8ma_ b.84.1.1 (A:) Lipoyl domain of the mitochondrial branched-chain alpha-ketoacid dehydrogenase {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Barrel-sandwich hybrid
superfamily: Single hybrid motif
family: Biotinyl/lipoyl-carrier proteins and domains
domain: Lipoyl domain of the mitochondrial branched-chain alpha-ketoacid dehydrogenase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=92.27  E-value=0.065  Score=40.65  Aligned_cols=24  Identities=13%  Similarity=0.187  Sum_probs=14.4

Q ss_pred             eeeeecCCCCeEecCceeEEEecC
Q psy14345         14 LLLASLEDGATVKAGQQLFKIKPT   37 (431)
Q Consensus        14 ~l~~~~~eGd~v~VG~~L~~Ie~~   37 (431)
                      +...++++||.|+.|++||.||+.
T Consensus        21 i~~w~v~~Gd~V~~g~~l~~vEt~   44 (87)
T d1k8ma_          21 VKEWYVKEGDTVSQFDSICEVQSD   44 (87)
T ss_dssp             EEEECCCTTCEECSSSCCEEEECS
T ss_pred             EEEEEcCCCCEEecCCEEEEEEcc
Confidence            344466666666666666666643

>d1pmra_ b.84.1.1 (A:) Lipoyl domain of the 2-oxoglutarate dehydrogenase complex {Escherichia coli [TaxId: 562]}

class: All beta proteins
fold: Barrel-sandwich hybrid
superfamily: Single hybrid motif
family: Biotinyl/lipoyl-carrier proteins and domains
domain: Lipoyl domain of the 2-oxoglutarate dehydrogenase complex
species: Escherichia coli [TaxId: 562]

Probab=91.56  E-value=0.039  Score=41.29  Aligned_cols=24  Identities=17%  Similarity=0.142  Sum_probs=16.5

Q ss_pred             ceeeeeecCCCCeEecCceeEEEe
Q psy14345         12 KFLLLASLEDGATVKAGQQLFKIK   35 (431)
Q Consensus        12 ~~~l~~~~~eGd~v~VG~~L~~Ie   35 (431)
                      ..++..++++||+|+.|++|+.||
T Consensus        17 g~i~~w~v~~Gd~V~~gd~l~~vE   40 (80)
T d1pmra_          17 ATVATWHKKPGDAVVRDEVLVEIE   40 (80)
T ss_dssp             EECCBCCCCTTCCBSSSCCBCBCC
T ss_pred             EEEEEEEeCCCCEEcCCCEEEEEE
Confidence            344445777777777777777777

>d1laba_ b.84.1.1 (A:) Lipoyl domain of dihydrolipoamide acetyltransferase {Bacillus stearothermophilus [TaxId: 1422]}

class: All beta proteins
fold: Barrel-sandwich hybrid
superfamily: Single hybrid motif
family: Biotinyl/lipoyl-carrier proteins and domains
domain: Lipoyl domain of dihydrolipoamide acetyltransferase
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=90.78  E-value=0.033  Score=41.65  Aligned_cols=26  Identities=12%  Similarity=0.164  Sum_probs=21.7

Q ss_pred             cceeeeeecCCCCeEecCceeEEEec
Q psy14345         11 KKFLLLASLEDGATVKAGQQLFKIKP   36 (431)
Q Consensus        11 ~~~~l~~~~~eGd~v~VG~~L~~Ie~   36 (431)
                      +..+...++++||.|+.|++|+.||+
T Consensus        15 eg~i~~w~v~~Gd~V~~gd~l~~vEt   40 (80)
T d1laba_          15 EGEIVKWFVKPGDEVNEDDVLCEVQN   40 (80)
T ss_dssp             SEEEEECCCSSCCEECSSCCCEEEEC
T ss_pred             eEEEEEEEeCCCCEEeeCcCEEEEEc
Confidence            34555669999999999999999994

>d1gjxa_ b.84.1.1 (A:) Lipoyl domain of dihydrolipoamide acetyltransferase {Neisseria meningitidis [TaxId: 487]}

class: All beta proteins
fold: Barrel-sandwich hybrid
superfamily: Single hybrid motif
family: Biotinyl/lipoyl-carrier proteins and domains
domain: Lipoyl domain of dihydrolipoamide acetyltransferase
species: Neisseria meningitidis [TaxId: 487]

Probab=87.15  E-value=0.19  Score=37.34  Aligned_cols=30  Identities=10%  Similarity=0.179  Sum_probs=24.9

Q ss_pred             ccceeeeeecCCCCeEecCceeEEEecCCC
Q psy14345         10 NKKFLLLASLEDGATVKAGQQLFKIKPTAT   39 (431)
Q Consensus        10 ~~~~~l~~~~~eGd~v~VG~~L~~Ie~~~~   39 (431)
                      .+-.+..+++++||+|++|++|+.|+++++
T Consensus        51 ~~G~i~~i~v~~G~~v~~G~~l~~ie~~g~   80 (81)
T d1gjxa_          51 VAGVVKEVKVKVGDKISEGGLIVVVEAEGT   80 (81)
T ss_dssp             CSSBBCCCCCCSSCEECSSSCCCEECCSCC
T ss_pred             eeEEEEEEEeCCCCEECCCCEEEEEecccC
Confidence            344566779999999999999999997665

>d1ghja_ b.84.1.1 (A:) Lipoyl domain of the 2-oxoglutarate dehydrogenase complex {Azotobacter vinelandii [TaxId: 354]}

class: All beta proteins
fold: Barrel-sandwich hybrid
superfamily: Single hybrid motif
family: Biotinyl/lipoyl-carrier proteins and domains
domain: Lipoyl domain of the 2-oxoglutarate dehydrogenase complex
species: Azotobacter vinelandii [TaxId: 354]

Probab=86.52  E-value=0.25  Score=36.47  Aligned_cols=31  Identities=19%  Similarity=0.218  Sum_probs=25.7

Q ss_pred             ccccceeeeeecCCCCeEecCceeEEEecCC
Q psy14345          8 QNNKKFLLLASLEDGATVKAGQQLFKIKPTA   38 (431)
Q Consensus         8 ~~~~~~~l~~~~~eGd~v~VG~~L~~Ie~~~   38 (431)
                      +..+-.+..+.+++||+|++|++|+.|+.++
T Consensus        49 a~~~G~v~~i~v~~Gd~v~~G~~l~~i~~~G   79 (79)
T d1ghja_          49 AEADGVIAEIVKNEGDTVLSGELLGKLTEGG   79 (79)
T ss_dssp             CSSCEEEEEESSCTTCEECTTCEEEEECCCC
T ss_pred             eceeEEEEEEEcCCCCEECCCCEEEEEeCCC
Confidence            3445567788999999999999999999764

>d1y8ob1 b.84.1.1 (B:128-229) Lipoyl domain of dihydrolipoamide acetyltransferase {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Barrel-sandwich hybrid
superfamily: Single hybrid motif
family: Biotinyl/lipoyl-carrier proteins and domains
domain: Lipoyl domain of dihydrolipoamide acetyltransferase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=86.17  E-value=0.29  Score=37.97  Aligned_cols=23  Identities=26%  Similarity=0.371  Sum_probs=12.2

Q ss_pred             eeeeeecCCCC-eEecCceeEEEe
Q psy14345         13 FLLLASLEDGA-TVKAGQQLFKIK   35 (431)
Q Consensus        13 ~~l~~~~~eGd-~v~VG~~L~~Ie   35 (431)
                      ++..+.+++|| +|+||++|+.|.
T Consensus        58 ~l~~i~v~eGd~~v~vG~~ia~i~   81 (102)
T d1y8ob1          58 YLAKILVPEGTRDVPLGTPLCIIV   81 (102)
T ss_dssp             EEEEESSCTTCCSEETTCEEEEEE
T ss_pred             EEEEEEEccCCEEEcCCCEEEEEe
Confidence            34444555554 455555555554

>d1laba_ b.84.1.1 (A:) Lipoyl domain of dihydrolipoamide acetyltransferase {Bacillus stearothermophilus [TaxId: 1422]}

class: All beta proteins
fold: Barrel-sandwich hybrid
superfamily: Single hybrid motif
family: Biotinyl/lipoyl-carrier proteins and domains
domain: Lipoyl domain of dihydrolipoamide acetyltransferase
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=84.60  E-value=0.38  Score=35.53  Aligned_cols=28  Identities=21%  Similarity=0.347  Sum_probs=23.6

Q ss_pred             cceeeeeecCCCCeEecCceeEEEecCC
Q psy14345         11 KKFLLLASLEDGATVKAGQQLFKIKPTA   38 (431)
Q Consensus        11 ~~~~l~~~~~eGd~v~VG~~L~~Ie~~~   38 (431)
                      +-.+..+.+++||+|++|++|+.|+.++
T Consensus        52 ~G~v~~i~v~~Gd~v~~G~~l~~ie~~G   79 (80)
T d1laba_          52 KGKVLEILVPEGTVATVGQTLITLDAPG   79 (80)
T ss_dssp             CEECCCBSSCSSSEECSSSCSBCBBCSC
T ss_pred             CEEEEEEEeCCCCEECCCCEEEEEecCc
Confidence            4456678999999999999999998654

>d1k8ma_ b.84.1.1 (A:) Lipoyl domain of the mitochondrial branched-chain alpha-ketoacid dehydrogenase {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Barrel-sandwich hybrid
superfamily: Single hybrid motif
family: Biotinyl/lipoyl-carrier proteins and domains
domain: Lipoyl domain of the mitochondrial branched-chain alpha-ketoacid dehydrogenase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=84.06  E-value=0.4  Score=35.98  Aligned_cols=31  Identities=13%  Similarity=0.074  Sum_probs=25.5

Q ss_pred             ccceeeeeecCCCCeEecCceeEEEecCCCC
Q psy14345         10 NKKFLLLASLEDGATVKAGQQLFKIKPTATS   40 (431)
Q Consensus        10 ~~~~~l~~~~~eGd~v~VG~~L~~Ie~~~~~   40 (431)
                      .+-.+..+.+++||+|++|++|++|+.++..
T Consensus        54 ~~G~I~~i~v~~G~~v~~G~~l~~i~~~~~~   84 (87)
T d1k8ma_          54 YDGVIKKLYYNLDDIAYVGKPLVDIETEALK   84 (87)
T ss_dssp             SCEEEEEECCCSSCEECTTSEEEEEECSCCT
T ss_pred             CCEEEEEEEeCCCCEECCCCEEEEEEcCCcc
Confidence            3456667899999999999999999976543

>d1qjoa_ b.84.1.1 (A:) Lipoyl domain of dihydrolipoamide acetyltransferase {Escherichia coli [TaxId: 562]}

class: All beta proteins
fold: Barrel-sandwich hybrid
superfamily: Single hybrid motif
family: Biotinyl/lipoyl-carrier proteins and domains
domain: Lipoyl domain of dihydrolipoamide acetyltransferase
species: Escherichia coli [TaxId: 562]

Probab=83.85  E-value=0.51  Score=34.72  Aligned_cols=28  Identities=14%  Similarity=0.205  Sum_probs=23.8

Q ss_pred             ceeeeeecCCCCeEecCceeEEEecCCC
Q psy14345         12 KFLLLASLEDGATVKAGQQLFKIKPTAT   39 (431)
Q Consensus        12 ~~~l~~~~~eGd~v~VG~~L~~Ie~~~~   39 (431)
                      -++..+++++||+|++|++|+.|+.+++
T Consensus        52 G~v~~i~v~~G~~V~~G~~l~~ie~eg~   79 (80)
T d1qjoa_          52 GVVKELKVNVGDKVKTGSLIMIFEVEGA   79 (80)
T ss_dssp             EEEEECCCCTTCEECTTCCCEEEESCCC
T ss_pred             EEEEEEEeCCCCEECCCCEEEEEecCcC
Confidence            3556679999999999999999997654

>d1dcza_ b.84.1.1 (A:) Biotin carboxyl carrier domain of transcarboxylase (TC 1.3S) {Propionibacterium freudenreichii, subsp. shermanii [TaxId: 1744]}

class: All beta proteins
fold: Barrel-sandwich hybrid
superfamily: Single hybrid motif
family: Biotinyl/lipoyl-carrier proteins and domains
domain: Biotin carboxyl carrier domain of transcarboxylase (TC 1.3S)
species: Propionibacterium freudenreichii, subsp. shermanii [TaxId: 1744]

Probab=83.69  E-value=0.37  Score=35.26  Aligned_cols=26  Identities=27%  Similarity=0.415  Sum_probs=22.5

Q ss_pred             eeeeecCCCCeEecCceeEEEecCCC
Q psy14345         14 LLLASLEDGATVKAGQQLFKIKPTAT   39 (431)
Q Consensus        14 ~l~~~~~eGd~v~VG~~L~~Ie~~~~   39 (431)
                      +..+++++||.|+.|++|+.||....
T Consensus        19 v~~~~V~~Gd~V~~G~~l~~vE~~K~   44 (77)
T d1dcza_          19 VSKILVKEGDTVKAGQTVLVLEAMKM   44 (77)
T ss_dssp             EEEECCCTTCEECTTSEEEEEEETTE
T ss_pred             EEEEEcCCCCEEeCCCeEEEEEccCc
Confidence            56679999999999999999996543

>d1bdoa_ b.84.1.1 (A:) Biotinyl domain of acetyl-CoA carboxylase {Escherichia coli [TaxId: 562]}

class: All beta proteins
fold: Barrel-sandwich hybrid
superfamily: Single hybrid motif
family: Biotinyl/lipoyl-carrier proteins and domains
domain: Biotinyl domain of acetyl-CoA carboxylase
species: Escherichia coli [TaxId: 562]

Probab=83.08  E-value=0.46  Score=35.10  Aligned_cols=19  Identities=32%  Similarity=0.471  Sum_probs=14.3

Q ss_pred             eecCCCCeEecCceeEEEe
Q psy14345         17 ASLEDGATVKAGQQLFKIK   35 (431)
Q Consensus        17 ~~~~eGd~v~VG~~L~~Ie   35 (431)
                      ..+++||.|+.|++|+.||
T Consensus        25 ~~V~~Gd~V~~Gq~l~~iE   43 (80)
T d1bdoa_          25 AFIEVGQKVNVGDTLCIVE   43 (80)
T ss_dssp             CSCCTTCEECTTCEEEEEE
T ss_pred             eEccCCCeEeCCCEEEEEE
Confidence            3577777777777777777

>d1iyua_ b.84.1.1 (A:) Lipoyl domain of dihydrolipoamide acetyltransferase {Azotobacter vinelandii [TaxId: 354]}

class: All beta proteins
fold: Barrel-sandwich hybrid
superfamily: Single hybrid motif
family: Biotinyl/lipoyl-carrier proteins and domains
domain: Lipoyl domain of dihydrolipoamide acetyltransferase
species: Azotobacter vinelandii [TaxId: 354]

Probab=81.58  E-value=0.46  Score=34.87  Aligned_cols=28  Identities=11%  Similarity=0.173  Sum_probs=23.8

Q ss_pred             ceeeeeecCCCCeEecCceeEEEecCCC
Q psy14345         12 KFLLLASLEDGATVKAGQQLFKIKPTAT   39 (431)
Q Consensus        12 ~~~l~~~~~eGd~v~VG~~L~~Ie~~~~   39 (431)
                      .-++...+++||.|+.|++|+.||+...
T Consensus        13 g~i~~~~v~~Gd~V~~gd~l~~iE~~K~   40 (79)
T d1iyua_          13 GEVIELLVKTGDLIEVEQGLVVLESAKA   40 (79)
T ss_dssp             EEEEEECCCTTCBCCSSSEEEEEECSSC
T ss_pred             EEEEEEEecCCCEEecCceEEEEEecCc
Confidence            4566779999999999999999996544

>d1pmra_ b.84.1.1 (A:) Lipoyl domain of the 2-oxoglutarate dehydrogenase complex {Escherichia coli [TaxId: 562]}

class: All beta proteins
fold: Barrel-sandwich hybrid
superfamily: Single hybrid motif
family: Biotinyl/lipoyl-carrier proteins and domains
domain: Lipoyl domain of the 2-oxoglutarate dehydrogenase complex
species: Escherichia coli [TaxId: 562]

Probab=81.49  E-value=0.2  Score=37.13  Aligned_cols=31  Identities=19%  Similarity=0.207  Sum_probs=25.7

Q ss_pred             cccccceeeeeecCCCCeEecCceeEEEecC
Q psy14345          7 KQNNKKFLLLASLEDGATVKAGQQLFKIKPT   37 (431)
Q Consensus         7 ~~~~~~~~l~~~~~eGd~v~VG~~L~~Ie~~   37 (431)
                      .+..+-.+..+.+++||+|++|++|++|+.+
T Consensus        49 ~a~~~G~l~~i~v~~Gd~v~~G~~l~~i~eg   79 (80)
T d1pmra_          49 PASADGILDAVLEDEGTTVTSRQILGRLREG   79 (80)
T ss_dssp             BCCSBCCCCBCTTCTTCEECSSSEEEBCCCC
T ss_pred             eccCCEEEEEEEeCCCCEECCCCEEEEEeCC
Confidence            3455667778899999999999999999843

>d1dcza_ b.84.1.1 (A:) Biotin carboxyl carrier domain of transcarboxylase (TC 1.3S) {Propionibacterium freudenreichii, subsp. shermanii [TaxId: 1744]}

class: All beta proteins
fold: Barrel-sandwich hybrid
superfamily: Single hybrid motif
family: Biotinyl/lipoyl-carrier proteins and domains
domain: Biotin carboxyl carrier domain of transcarboxylase (TC 1.3S)
species: Propionibacterium freudenreichii, subsp. shermanii [TaxId: 1744]

Probab=81.14  E-value=0.49  Score=34.55  Aligned_cols=29  Identities=21%  Similarity=0.243  Sum_probs=23.3

Q ss_pred             cccccceeeeeecCCCCeEecCceeEEEe
Q psy14345          7 KQNNKKFLLLASLEDGATVKAGQQLFKIK   35 (431)
Q Consensus         7 ~~~~~~~~l~~~~~eGd~v~VG~~L~~Ie   35 (431)
                      .+.-+-.+..+++++||+|..|++|++|.
T Consensus        49 ~ap~~G~V~~i~v~~G~~V~~G~~L~~ig   77 (77)
T d1dcza_          49 NAPTDGKVEKVLVKERDAVQGGQGLIKIG   77 (77)
T ss_dssp             ECSSSEEEEEECCCTTCBCCBTSEEEEEC
T ss_pred             EeCCCEEEEEEeeCCCCEECCCCEEEEeC
Confidence            34444566778999999999999999983

>d1y8ob1 b.84.1.1 (B:128-229) Lipoyl domain of dihydrolipoamide acetyltransferase {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Barrel-sandwich hybrid
superfamily: Single hybrid motif
family: Biotinyl/lipoyl-carrier proteins and domains
domain: Lipoyl domain of dihydrolipoamide acetyltransferase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=80.77  E-value=0.74  Score=35.49  Aligned_cols=29  Identities=14%  Similarity=0.139  Sum_probs=23.7

Q ss_pred             ceeeeeecCCCCeEecCceeEEEecCCCC
Q psy14345         12 KFLLLASLEDGATVKAGQQLFKIKPTATS   40 (431)
Q Consensus        12 ~~~l~~~~~eGd~v~VG~~L~~Ie~~~~~   40 (431)
                      .-+...++++||.|+.|++||.||+....
T Consensus        20 g~i~~w~v~~Gd~V~~gd~l~~vETdK~~   48 (102)
T d1y8ob1          20 GTVQRWEKKVGEKLSEGDLLAEIETDKAT   48 (102)
T ss_dssp             EEEEEECSCTTCEECTTCEEEEEECSSCE
T ss_pred             EEEEEEEeCCCCEEecCccEEEEEcCcEE
Confidence            33555699999999999999999976553