Psyllid ID: psy1434

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------
Protein Sequence
MSHSGQVISQNLYDRPEFKATKEGPPTDDGSYMGYSVASGFFSGESGVAVGIPRGARLLGKVALYTTNMTNLQNITGEQLGAYFAYAVTTSDVDGDGADDLIIGAPLYTNPTNNVGHYETGRIYVVYQGKETYKFRRLHTRDGKNSKARFGLSLCNLGDINKDGFGDFAVGAPYDGPNERGVVYIYHGSPIGARENPSQIITAEEVNFGLQGSLTTFGFSLAGGVDLDENQYPDLVIGAYESNTAFVLRSTAPYDGPNERGVVYIYHGSPIGARENPSQIITAEEVNFGLQELNVQILLDSKKPKSPRMFFLSDEGKNVINQTLLLIKGTQFCKSTVDMVCEAERPLCTPITPAVSK
Secondary Structure (PSIPRED)
ccEEcEEEEEEccccccEEEcccccccccccEEEEEEEEEEEccccEEEEccccccccEEEEEEEEcccEEEEEEEcccccccccEEEEEEcccccccccEEEEcccccccccccccccccEEEEEEEcccccEEEEEEEEccccccccEEEcccccccccccccccEEEEccccccccccEEEEEccccccccccccEEEEcccccccccccccEEEEEEEccccccccccccEEEccccccEEEEEEEcccccccccccEEEEEccccccccccccEEEEcccccEEEEEEEEEEEEEccccccccEEEEccccEEEEEEEEEEEcccccEEEEEEEEccccccEEccEEEEEcc
Secondary Structure Prediction (SSPRO)
cccccEEEEEEcccccccEEcccccccccccccEEEEEEEEccccccEEEEcccccccccEEEEEccccHHHHHcccHHHHHHcccEEEEEEccccccccEEEEccEEEEcccccccccccEEEEEEcccccccccccEEcccccccccccHHHcccccccccccccEEEEcccccccccEEEEEEEcccccccccccEEEEccccccccccccccccHEEcccccccccccccEEEEcccccEEEEEEccEEEEEEccEEEEccccccEEEEEEEEEEEEEcccccccEEEEEEEEEEccccccccEEEEEEccccccEEEEEEEccccccccEEEEEEcHHHHcccccEEEEEcc
Coil and Loop (DISEMBL)
mshsgqvisqnlydrpefkatkegpptddgsymgysvasgffsgesgvavgiprgARLLGKVALYTTNMTNLQNITGEQLGAYFAYAVttsdvdgdgaddliigaplytnptnnvghyetGRIYVVYqgketykfrrlhtrdgknskarfglslcnlgdinkdgfgdfavgapydgpnergvvyiyhgspigarenpsqiitaeevnfglqgslttfgfslaggvdldenqypdlvIGAYESNTAFvlrstapydgpnergvvyiyhgspigarenpsqiiTAEEVNFGLQELNVQILldskkpksprmfflsdegknVINQTLLLIKGTQFCKSTVDMVCeaerplctpitpavsk
Flexible Loop (DISEMBL)
mshsgqvisqnlydrpefkatkegpptddgsYMGYSVASGFFSGESGVAVGIPRGARLLGKVALYTTNMTNLQNITGEQLGAYFAYAVTTSDVDGDGADDLIIGAPlytnptnnvghyeTGRIYVVYQGKETYKFRrlhtrdgknskarFGLSLCNLGDINKDGFGDFAVGAPYDGPNERGVVYIYHGSPIGARENPSQIITAEEVNFGLQGSLTTFGFSLAGGVDLDENQYPDLVIGAYESNTAFVLRStapydgpnERGVVYIYHGSPIGARENPSQIITAEEVNFGLQELNVQILLDSKKPKSPRMFFLSDEGKNVINQTLLLIKGTQFCKSTVDMVCEAerplctpitpavsk
Low Complexity Region (SEG)
MSHSGQVISQNLYDRPEFKATKEGPPTDDGSYMGYSVASGFFSGESGVAVGIPRGARLLGKVALYTTNMTNLQNITGEQLGAYFAYAVTTSdvdgdgaddliigaPLYTNPTNNVGHYETGRIYVVYQGKETYKFRRLHTRDGKNSKARFGLSLCNLGDINKDGFGDFAVGAPYDGPNERGVVYIYHGSPIGARENPSQIITAEEVNFGLQGSLTTFGFSLAGGVDLDENQYPDLVIGAYESNTAFVLRSTAPYDGPNERGVVYIYHGSPIGARENPSQIITAEEVNFGLQELNVQILLDSKKPKSPRMFFLSDEGKNVINQTLLLIKGTQFCKSTVDMVCEAERPLCTPITPAVSK
Disordered region (IsUnstruct)
*******************************YMGYSVASGFFSGESGVAVGIPRGARLLGKVALYTTNMTNLQNITGEQLGAYFAYAVTTSDVDGDGADDLIIGAPLYTNPTNNVGHYETGRIYVVYQGKETYKFRRLHTRDGKNSKARFGLSLCNLGDINKDGFGDFAVGAPYDGPNERGVVYIYHGSPIGARENPSQIITAEEVNFGLQGSLTTFGFSLAGGVDLDENQYPDLVIGAYESNTAFVLRSTAPYDGPNERGVVYIYHGSPIGARENPSQIITAEEVNFGLQELNVQILLD*******RMFFLSDEGKNVINQTLLLIKGTQFCKSTVDMVCEAERPLCTP*******
Disordered Region (DISOPRED)
MSHSGQVISQN******************GSYMGYSVASGFFSGESGVAVGIPRGARLLGKVALYTTNMTNLQNITGEQLGAYFAYAVTTSDVDGDGADDLIIGAPLYTNPTNN*GHYETGRIYVVYQGKETY***********NSKARFGLSLCNLGDINKDGFGDFAVGAPYDGPNERGVVYIYHGSPIGARENPS************QGSLTTFGFSLAGGVDLDENQYPDLVIGAYESNTAFVLRSTAPYDGPNERGVVYIYHGSPIGARENPSQIITAEEVNFGLQELNVQILLDSKKPKSPR**********************QFCKSTVDMVCEAERPLCTPITPAVSK
Disordered Region (DISEMBL)
MSHSGQVISQNLYDRPEFKATKEGPPTDDGSYMGYSVASGFFSGESGVAVGIPRGARLLGKVALYTTNMTNLQNITGEQLGAYFAYAVTTSDVDGDGADDLIIGAPLYTNPTNNVGHYETGRIYVVYQGKETYKFRRLHTRDGKNSKARFGLSLCNLGDINKDGFGDFAVGAPYDGPNERGVVYIYHGSPIGARENPSQIITAEEVNFGLQGSLTTFGFSLAGGVDLDENQYPDLVIGAYESNTAFVLRSTAPYDGPNERGVVYIYHGSPIGARENPSQIITAEEVNFGLQELNVQILLDSKKPKSPRMFFLSDEGKNVINQTLLLIKGTQFCKSTVDMVCEAERPLCTPITPAVSK
Disordered Region (DISPRO)
*SHSGQVISQNLYDRPEFKATKEGPPTDDGSYMGYSVASGFFSGESGVAVGIPRGARLLGKVALYTTNMTNLQNITGEQLGAYFAYAVTTSDVDGDGADDLIIGAPLYTNPTNNVGHYETGRIYVVYQGKETYKFRRLHTRDGKNSKARFGLSLCNLGDINKDGFGDFAVGAPYDGPNERGVVYIYHGSPIGARENPSQIITAEEVNFGLQGSLTTFGFSLAGGVDLDENQYPDLVIGAYESNTAFVLRSTAPYDGPNERGVVYIYHGSPIGARENPSQIITAEEVNFGLQELNVQILLDSKKPKSPRMFFLSDEGKNVINQTLLLIKGTQFCKSTVDMVCEAERPLCTPITPAVSK
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
ooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
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TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MSHSGQVISQNLYDRPEFKATKEGPPTDDGSYMGYSVASGFFSGESGVAVGIPRGARLLGKVALYTTNMTNLQNITGEQLGAYFAYAVTTSDVDGDGADDLIIGAPLYTNPTNNVGHYETGRIYVVYQGKETYKFRRLHTRDGKNSKARFGLSLCNLGDINKDGFGDFAVGAPYDGPNERGVVYIYHGSPIGARENPSQIITAEEVNFGLQGSLTTFGFSLAGGVDLDENQYPDLVIGAYESNTAFVLRSTAPYDGPNERGVVYIYHGSPIGARENPSQIITAEEVNFGLQELNVQILLDSKKPKSPRMFFLSDEGKNVINQTLLLIKGTQFCKSTVDMVCEAERPLCTPITPAVSK
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	357	2.2.26 [Sep-21-2011]
P12080	1396	Integrin alpha-PS2 OS=Dro	yes	N/A	0.952	0.243	0.432	2e-69
A2ARA8	1062	Integrin alpha-8 OS=Mus m	yes	N/A	0.630	0.211	0.420	8e-46
P26009	1044	Integrin alpha-8 OS=Gallu	yes	N/A	0.638	0.218	0.412	2e-45
P53708	1063	Integrin alpha-8 OS=Homo	yes	N/A	0.638	0.214	0.404	5e-44
P26008	1034	Integrin alpha-V OS=Gallu	no	N/A	0.630	0.217	0.412	7e-43
Q06274	1050	Integrin alpha-5 OS=Xenop	N/A	N/A	0.630	0.214	0.405	5e-42
P80746	1048	Integrin alpha-V OS=Bos t	no	N/A	0.633	0.215	0.397	1e-41
P43406	1044	Integrin alpha-V OS=Mus m	no	N/A	0.913	0.312	0.346	4e-41
P06756	1048	Integrin alpha-V OS=Homo	no	N/A	0.633	0.215	0.388	8e-40
P08648	1049	Integrin alpha-5 OS=Homo	no	N/A	0.840	0.285	0.339	1e-39

>sp|P12080|ITA2_DROME Integrin alpha-PS2 OS=Drosophila melanogaster GN=if PE=1 SV=2

 Score =  263 bits (671), Expect = 2e-69,   Method: Compositional matrix adjust.
 Identities = 162/375 (43%), Positives = 234/375 (62%), Gaps = 35/375 (9%)

Query: 4   SGQVISQNLYDRPEFK--ATKEGPPTDDGSYMGYSVASGFFSGESG--VAVGIPRGARLL 59
           +G + S +   RPE +  +T E    +D SY+GYS+ +G F G+    VA+G+PRG  L+
Sbjct: 248 TGGMASSHDVTRPENQVFSTSESASVNDDSYLGYSMVTGDFDGDRSEDVAIGMPRGGNLV 307

Query: 60  GKVALYTTNMTNLQNITGEQLGAYFAYAVTTSDVDGDGADDLIIGAPLYTNPTNNVGHYE 119
           G++ +   NM N+ NITG Q+G YF Y++ TSDVDGDG DDL+IGAP+YT+P N  G Y+
Sbjct: 308 GRIVVNRWNMANIFNITGRQIGEYFGYSLATSDVDGDGLDDLLIGAPMYTDPDNVEGKYD 367

Query: 120 TGRIYVVYQG--KETYKFRRLHTRDGKNSKARFGLSLCNLGDINKDGFGDFAVGAPYDGP 177
            GR+Y++ QG   E  ++   H RDG +SK RFGL+L  LGD+N DG+GDFAVGAPYDGP
Sbjct: 368 VGRVYILLQGGPTEEKRWTTEHIRDGYHSKGRFGLALTTLGDVNGDGYGDFAVGAPYDGP 427

Query: 178 NERGVVYIYHGSPIGARENPSQIITAEEVNFGLQGS--LTTFGFSLAGGVDLDENQYPDL 235
             RGVVYI+HGSP+G    PSQII +E++   ++G+    TFGF+L+GG+D+D N YPDL
Sbjct: 428 EGRGVVYIFHGSPMGPLAKPSQIIKSEQL---VEGAPYPRTFGFALSGGLDMDGNTYPDL 484

Query: 236 VIGAYESNTAFVLRS------TAPYDGPNERGVVYIYHGSPIGAREN---PSQIITA--- 283
            +GAY S+  F+ +S       A     +   ++ +   S    R++   P  ++T    
Sbjct: 485 AVGAYSSDQVFIFKSRPVAAVNAETSFASNSKLISLDDRSCQLVRDHKKVPCMLLTTCWS 544

Query: 284 -------EEVNFGLQELNVQILLDSKKPKSPRMFFLSDEGKNVINQTLLLIKGTQFCKST 336
                  E+++F     +V  LLD+KK  +PRMFFL DEGKN+ NQT+ L  G ++C + 
Sbjct: 545 YTGRYLPEQLDF-----DVSWLLDAKKLLNPRMFFLRDEGKNIRNQTIRLNYGQKYCLNE 599

Query: 337 VDMVCEAERPLCTPI 351
              + +  +   TP+
Sbjct: 600 TVYLLDKVQDKLTPL 614

Alpha-PS2/beta-PS is a receptor for tiggrin. Also binds to wing blister and Ten-m.
Drosophila melanogaster (taxid: 7227)

>sp|A2ARA8|ITA8_MOUSE Integrin alpha-8 OS=Mus musculus GN=Itga8 PE=1 SV=1

 Score =  184 bits (467), Expect = 8e-46,   Method: Compositional matrix adjust.
 Identities = 100/238 (42%), Positives = 144/238 (60%), Gaps = 13/238 (5%)

Query: 19  KATKEGPPTDDGSYMGYSVASGFFSGESG--VAVGIPRGARLLGKVALY-TTNMTNLQNI 75
           K T   P + D SY+GYSVA+G F+G+S   +  GIPRGA+  G V++  +T+MT +QN 
Sbjct: 252 KQTDVAPASYDDSYLGYSVAAGEFTGDSQQELVAGIPRGAQNFGYVSIINSTDMTFIQNF 311

Query: 76  TGEQLGAYFAYAVTTSDVDGDGADDLIIGAPLYTNPTNNVGHYETGRIYVVYQGKETYKF 135
           TGEQ+ +YF Y V  SDV+ DG DD+++GAPL+          E G++Y+  Q      F
Sbjct: 312 TGEQMASYFGYTVVVSDVNNDGMDDILVGAPLFMEREFESNPREVGQVYLYLQASALL-F 370

Query: 136 RRLHTRDGKNSKARFGLSLCNLGDINKDGFGDFAVGAPYDGPNERGVVYIYHGSPIGARE 195
           +      G  +  RFG S+ +LGD+N+DG+ D A+G P+ G ++RG V IY+G+P G   
Sbjct: 371 QDPQVLTGTETFGRFGSSVAHLGDLNQDGYNDIAIGVPFAGKDQRGKVLIYNGNPRGLHS 430

Query: 196 NPSQIITAEEVNFGLQGSLTT---FGFSLAGGVDLDENQYPDLVIGAYESNTAFVLRS 250
            PSQ++       G+ GS T    FGFSL G  D+D+N YPDL++GA+      V R+
Sbjct: 431 KPSQVLQ------GIWGSQTIPSGFGFSLRGDADIDKNDYPDLLVGAFGKGKVAVYRA 482

Integrin alpha-8/beta-1 functions in the genesis of kidney and probably of other organs by regulating the recruitment of mesenchymal cells into epithelial structures. It recognizes the sequence R-G-D in a wide array of ligands including TNC, FN1, SPP1 TGFB1, TGFB3 and VTN. NPNT is probably its functional ligand in kidney genesis. Neuronal receptor for TNC it mediates cell-cell interactions and regulates neurite outgrowth of sensory and motor neurons.

Mus musculus (taxid: 10090)

>sp|P26009|ITA8_CHICK Integrin alpha-8 OS=Gallus gallus GN=ITGA8 PE=1 SV=1

 Score =  183 bits (465), Expect = 2e-45,   Method: Compositional matrix adjust.
 Identities = 97/235 (41%), Positives = 146/235 (62%), Gaps = 7/235 (2%)

Query: 19  KATKEGPPTDDGSYMGYSVASGFFSGESG--VAVGIPRGARLLGKVALY-TTNMTNLQNI 75
           K T   PPT D +YMGYSVA+G F+G+S   +  G+PRGA+  G V++  ++++T +QN 
Sbjct: 235 KQTGVAPPTYDDNYMGYSVAAGEFTGDSEEELVAGVPRGAQNFGYVSIINSSDLTFIQNF 294

Query: 76  TGEQLGAYFAYAVTTSDVDGDGADDLIIGAPLYTNPTNNVGHYETGRIYVVYQGKETYKF 135
           TGEQ+ +YF Y V  SDV+ DG DD+++GAPL+          E G++Y+ Y  +  + F
Sbjct: 295 TGEQMASYFGYTVAVSDVNNDGLDDILVGAPLFMEREFESKPKEVGQVYL-YLQESAFLF 353

Query: 136 RRLHTRDGKNSKARFGLSLCNLGDINKDGFGDFAVGAPYDGPNERGVVYIYHGSPIGARE 195
           R      G     RFG ++ +LGD+N+DG+ D AVGAP+ G + RG V IY+G   G + 
Sbjct: 354 RDPQILTGTEVFGRFGSAITHLGDLNQDGYNDIAVGAPFAGEDRRGKVLIYNGYSNGLKT 413

Query: 196 NPSQIITAEEVNFGLQGSLTTFGFSLAGGVDLDENQYPDLVIGAYESNTAFVLRS 250
           +PSQ++      +  Q   + FGF+L G  D+D+N YPDL++GA+ +  A V R+
Sbjct: 414 DPSQVLNGA---WASQSMPSGFGFTLRGDSDVDKNDYPDLIVGAFGAGKAVVYRA 465

Integrin alpha-8/beta-1 functions in the genesis of kidney and probably of other organs by regulating the recruitment of mesenchymal cells into epithelial structures. It recognizes the sequence R-G-D in a wide array of ligands including TNC, FN1, SPP1, TGFB1, TGFB3 and VTN. NPNT is probably its functional ligand in kidney genesis (By similarity). Neuronal receptor for TNC it mediates cell-cell interactions and regulates neurite outgrowth of sensory and motor neurons.

Gallus gallus (taxid: 9031)

>sp|P53708|ITA8_HUMAN Integrin alpha-8 OS=Homo sapiens GN=ITGA8 PE=1 SV=3

 Score =  178 bits (452), Expect = 5e-44,   Method: Compositional matrix adjust.
 Identities = 95/235 (40%), Positives = 144/235 (61%), Gaps = 7/235 (2%)

Query: 19  KATKEGPPTDDGSYMGYSVASGFFSGESG--VAVGIPRGARLLGKVALY-TTNMTNLQNI 75
           K T+  P + D SY+GYSVA+G F+G+S   +  GIPRGA+  G V++  +T+MT +QN 
Sbjct: 253 KQTEVAPASYDDSYLGYSVAAGEFTGDSQQELVAGIPRGAQNFGYVSIINSTDMTFIQNF 312

Query: 76  TGEQLGAYFAYAVTTSDVDGDGADDLIIGAPLYTNPTNNVGHYETGRIYVVYQGKETYKF 135
           TGEQ+ +YF Y V  SDV+ DG DD+++GAPL+          E G+IY +Y    +  F
Sbjct: 313 TGEQMASYFGYTVVVSDVNSDGLDDVLVGAPLFMEREFESNPREVGQIY-LYLQVSSLLF 371

Query: 136 RRLHTRDGKNSKARFGLSLCNLGDINKDGFGDFAVGAPYDGPNERGVVYIYHGSPIGARE 195
           R      G  +  RFG ++ +LGD+N+DG+ D A+G P+ G ++RG V IY+G+  G   
Sbjct: 372 RDPQILTGTETFGRFGSAMAHLGDLNQDGYNDIAIGVPFAGKDQRGKVLIYNGNKDGLNT 431

Query: 196 NPSQIITAEEVNFGLQGSLTTFGFSLAGGVDLDENQYPDLVIGAYESNTAFVLRS 250
            PSQ++     +  +    + FGF+L G  D+D+N YPDL++GA+ +    V R+
Sbjct: 432 KPSQVLQGVWASHAVP---SGFGFTLRGDSDIDKNDYPDLIVGAFGTGKVAVYRA 483

Integrin alpha-8/beta-1 functions in the genesis of kidney and probably of other organs by regulating the recruitment of mesenchymal cells into epithelial structures. It recognizes the sequence R-G-D in a wide array of ligands including TNC, FN1, SPP1 TGFB1, TGFB3 and VTN. NPNT is probably its functional ligand in kidney genesis. Neuronal receptor for TNC it mediates cell-cell interactions and regulates neurite outgrowth of sensory and motor neurons.

Homo sapiens (taxid: 9606)

>sp|P26008|ITAV_CHICK Integrin alpha-V OS=Gallus gallus GN=ITGAV PE=2 SV=1

 Score =  174 bits (442), Expect = 7e-43,   Method: Compositional matrix adjust.
 Identities = 97/235 (41%), Positives = 145/235 (61%), Gaps = 10/235 (4%)

Query: 20  ATKEGPPTDDGSYMGYSVASGFFSGE--SGVAVGIPRGARLLGKVALYT-TNMTNLQNIT 76
           AT+      D SY+GYSVA G FSG+       G+PR AR LG V++Y   NM+++ N T
Sbjct: 227 ATRPASAAFDDSYLGYSVAVGDFSGDGIEDFVSGVPRAARTLGMVSIYNGKNMSSMYNFT 286

Query: 77  GEQLGAYFAYAVTTSDVDGDGADDLIIGAPLYTNPTNNVGHYETGRIYVVYQ-GKETYKF 135
           GEQ+ AYF Y+V T+D++GD   DL IGAPL+ +  ++    E G++ +  Q     ++ 
Sbjct: 287 GEQMAAYFGYSVATTDINGDDYTDLFIGAPLFMDRGSDGKLQEVGQVSICLQRASGGFQI 346

Query: 136 RRLHTRDGKNSKARFGLSLCNLGDINKDGFGDFAVGAPYDGPNERGVVYIYHGSPIGARE 195
            +L   +G    ARFG ++  LGD+++DGF D AV APY G ++RG+VYIY+G   G   
Sbjct: 347 AKL---NGFEIFARFGSAIAPLGDLDQDGFNDIAVAAPYGGEDKRGLVYIYNGRATGLNA 403

Query: 196 NPSQIITAEEVNFGLQGSLTTFGFSLAGGVDLDENQYPDLVIGAYESNTAFVLRS 250
            PS+I+   E  +  +    +FG+SL G  D+D+N YPDL++GA+  +TA + R+
Sbjct: 404 VPSRIL---EGQWAARTMPPSFGYSLKGATDVDKNGYPDLIVGAFGVDTAVLYRA 455

The alpha-V integrins are receptors for vitronectin, cytotactin, fibronectin, fibrinogen, laminin, matrix metalloproteinase-2, osteopontin, prothrombin, thrombospondin and vWF. They recognize the sequence R-G-D in a wide array of ligands.

Gallus gallus (taxid: 9031)

>sp|Q06274|ITA5_XENLA Integrin alpha-5 OS=Xenopus laevis GN=itga5 PE=2 SV=1

 Score =  172 bits (435), Expect = 5e-42,   Method: Compositional matrix adjust.
 Identities = 94/232 (40%), Positives = 139/232 (59%), Gaps = 7/232 (3%)

Query: 21  TKEGPPTDDGSYMGYSVASGFFSGES--GVAVGIPRGARLLGKVALYT-TNMTNLQNITG 77
           T++   + D SY GYSVA G FS ++     VG+P+G    G V +   T++ +L N +G
Sbjct: 250 TRQAASSYDDSYFGYSVAVGEFSEDATEDFVVGVPKGNITYGYVTILNGTDLRSLYNFSG 309

Query: 78  EQLGAYFAYAVTTSDVDGDGADDLIIGAPLYTNPTNNVGHYETGRIYVVYQGKETYKFRR 137
           EQ+ +YF Y+V+ +D++ DG DDL+IGAPL+ + T++    E GR+YV  QG        
Sbjct: 310 EQMASYFGYSVSATDLNSDGLDDLLIGAPLFMDRTHDGRVQEVGRVYVYLQGDHMESTPH 369

Query: 138 LHTRDGKNSKARFGLSLCNLGDINKDGFGDFAVGAPYDGPNERGVVYIYHGSPIGARENP 197
           L    G     RFG S+ +LGD+++DGF D A+GAP+ G  +RG V+I++G P G    P
Sbjct: 370 L-ILTGMEEYGRFGSSIASLGDLDQDGFNDIAIGAPFGGEAQRGAVFIFNGQPGGVDSKP 428

Query: 198 SQIITAEEVNFGLQGSLTTFGFSLAGGVDLDENQYPDLVIGAYESNTAFVLR 249
           SQ++  +   +G     + FG S  GG DLD N YPDL++GA+  +T  V R
Sbjct: 429 SQVLQGQ---WGSSQQPSFFGLSTRGGHDLDGNGYPDLIVGAFGVDTTLVYR 477

Integrin alpha-5/beta-1 is a receptor for fibronectin. It recognizes the sequence R-G-D in its ligands.

Xenopus laevis (taxid: 8355)

>sp|P80746|ITAV_BOVIN Integrin alpha-V OS=Bos taurus GN=ITGAV PE=1 SV=3

 Score =  170 bits (431), Expect = 1e-41,   Method: Compositional matrix adjust.
 Identities = 93/234 (39%), Positives = 144/234 (61%), Gaps = 8/234 (3%)

Query: 20  ATKEGPPTDDGSYMGYSVASGFFSGE--SGVAVGIPRGARLLGKVALYT-TNMTNLQNIT 76
           AT+      D SY+GYSVA G F+G+       G+PR AR LG V +Y   NM++L N T
Sbjct: 239 ATRTAQAIFDDSYLGYSVAVGDFNGDGIDDFVSGVPRAARTLGMVYIYDGKNMSSLHNFT 298

Query: 77  GEQLGAYFAYAVTTSDVDGDGADDLIIGAPLYTNPTNNVGHYETGRIYVVYQGKETYKFR 136
           GEQ+ AYF ++V  +D++GD   D+ IGAPL+ +  ++    E G++ V  Q K +  F+
Sbjct: 299 GEQMAAYFGFSVAATDINGDDYADVFIGAPLFMDRGSDGKLQEVGQVSVSLQ-KASGDFQ 357

Query: 137 RLHTRDGKNSKARFGLSLCNLGDINKDGFGDFAVGAPYDGPNERGVVYIYHGSPIGAREN 196
            +   +G    ARFG ++  LGD+++DGF D A+ APY G +++G+VYI++G P G    
Sbjct: 358 TIKL-NGFEVFARFGSAIAPLGDLDQDGFNDIAIAAPYGGEDKKGIVYIFNGRPTGLNAV 416

Query: 197 PSQIITAEEVNFGLQGSLTTFGFSLAGGVDLDENQYPDLVIGAYESNTAFVLRS 250
           PSQI+   E  +  +    +FG+S+ G  D+D+N YPDL++GA+  + A + R+
Sbjct: 417 PSQIL---EGKWAARSMPPSFGYSMKGATDIDKNGYPDLIVGAFGVDRAVLYRA 467

The alpha-V integrins are receptors for vitronectin, MFGE8, cytotactin, fibronectin, fibrinogen, laminin, matrix metalloproteinase-2, osteopontin, osteomodulin, prothrombin, thrombospondin and vWF. They recognize the sequence R-G-D in a wide array of ligands.

Bos taurus (taxid: 9913)

>sp|P43406|ITAV_MOUSE Integrin alpha-V OS=Mus musculus GN=Itgav PE=1 SV=2

 Score =  169 bits (427), Expect = 4e-41,   Method: Compositional matrix adjust.
 Identities = 123/355 (34%), Positives = 187/355 (52%), Gaps = 29/355 (8%)

Query: 20  ATKEGPPTDDGSYMGYSVASGFFSGE--SGVAVGIPRGARLLGKVALYT-TNMTNLQNIT 76
           AT+      D SY+GYSVA G F+G+       G+PR AR LG V +Y   NM++L N T
Sbjct: 239 ATRTAQAIFDDSYLGYSVAVGDFNGDGIEDFVSGVPRAARTLGMVYIYDGKNMSSLHNFT 298

Query: 77  GEQLGAYFAYAVTTSDVDGDGADDLIIGAPLYTNPTNNVGHYETGRIYVVYQGKETYKFR 136
           GEQ+ AYF ++V  +D++GD   D+ IGAPL+ +  ++    E G++ V  Q +    F+
Sbjct: 299 GEQMAAYFGFSVAATDINGDDYADVFIGAPLFMDRGSDGKLQEVGQVSVSLQ-RAVGDFQ 357

Query: 137 RLHTRDGKNSKARFGLSLCNLGDINKDGFGDFAVGAPYDGPNERGVVYIYHGSPIGAREN 196
                +G    ARFG ++  LGD+++DGF D A+ APY G +++G+VYI++G   G    
Sbjct: 358 TTKL-NGFEVFARFGSAIAPLGDLDQDGFNDIAIAAPYGGEDKKGLVYIFNGRSTGLNSV 416

Query: 197 PSQIITAEEVNFGLQGSLTTFGFSLAGGVDLDENQYPDLVIGAYESNTAFVLRSTAPYDG 256
           PSQI+   E  +  Q    +FG+S+ G  D+D N YPDLV+GA+  + A + R+  P   
Sbjct: 417 PSQIL---EGQWAAQSMPPSFGYSMKGATDVDRNGYPDLVVGAFGVDRAVLYRAR-PVVT 472

Query: 257 PNERGVVY---IYHGSPIGARENPSQIITAEEVNFGLQ-----------ELNVQILLDSK 302
            N    VY   +   + I      +  ++   V F L+              V++LLD  
Sbjct: 473 VNAGLEVYPSILNQDNKICPLPGTALKVSCFNVRFCLKADGKGTLPRKLHFQVELLLDKL 532

Query: 303 KPKSP--RMFFLSDEGKNVINQTLLLIKGTQF-CKSTVDMVC-EAE-RPLCTPIT 352
           K K    R  FL +    V ++T+ + +G Q  C+  V  +  E+E R   TPIT
Sbjct: 533 KQKGAIRRALFLHNRSP-VHSKTMTVFRGGQMQCEELVAYLRDESEFRDKLTPIT 586

The alpha-V integrins are receptors for vitronectin, cytotactin, fibronectin, fibrinogen, laminin, matrix metalloproteinase-2, osteopontin, osteomodulin, prothrombin, thrombospondin and vWF. They recognize the sequence R-G-D in a wide array of ligands. Alpha-V integrins may play a role in embryo implantation, angiogenesis and wound healing. Mice expressing a null mutation of the alpha-V subunit gene survive until late in embryonic development and occasionally even to birth. They demonstrate cleft palate, and defective development of CNS and gastrointestinal blood vessels.

Mus musculus (taxid: 10090)

>sp|P06756|ITAV_HUMAN Integrin alpha-V OS=Homo sapiens GN=ITGAV PE=1 SV=2

 Score =  164 bits (416), Expect = 8e-40,   Method: Compositional matrix adjust.
 Identities = 91/234 (38%), Positives = 142/234 (60%), Gaps = 8/234 (3%)

Query: 20  ATKEGPPTDDGSYMGYSVASGFFSGE--SGVAVGIPRGARLLGKVALYT-TNMTNLQNIT 76
           AT+      D SY+GYSVA G F+G+       G+PR AR LG V +Y   NM++L N T
Sbjct: 239 ATRTAQAIFDDSYLGYSVAVGDFNGDGIDDFVSGVPRAARTLGMVYIYDGKNMSSLYNFT 298

Query: 77  GEQLGAYFAYAVTTSDVDGDGADDLIIGAPLYTNPTNNVGHYETGRIYVVYQGKETYKFR 136
           GEQ+ AYF ++V  +D++GD   D+ IGAPL+ +  ++    E G++ V  Q + +  F+
Sbjct: 299 GEQMAAYFGFSVAATDINGDDYADVFIGAPLFMDRGSDGKLQEVGQVSVSLQ-RASGDFQ 357

Query: 137 RLHTRDGKNSKARFGLSLCNLGDINKDGFGDFAVGAPYDGPNERGVVYIYHGSPIGAREN 196
                +G    ARFG ++  LGD+++DGF D A+ APY G +++G+VYI++G   G    
Sbjct: 358 TTKL-NGFEVFARFGSAIAPLGDLDQDGFNDIAIAAPYGGEDKKGIVYIFNGRSTGLNAV 416

Query: 197 PSQIITAEEVNFGLQGSLTTFGFSLAGGVDLDENQYPDLVIGAYESNTAFVLRS 250
           PSQI+   E  +  +    +FG+S+ G  D+D+N YPDL++GA+  + A + R+
Sbjct: 417 PSQIL---EGQWAARSMPPSFGYSMKGATDIDKNGYPDLIVGAFGVDRAILYRA 467

The alpha-V integrins are receptors for vitronectin, cytotactin, fibronectin, fibrinogen, laminin, matrix metalloproteinase-2, osteopontin, osteomodulin, prothrombin, thrombospondin and vWF. They recognize the sequence R-G-D in a wide array of ligands. In case of HIV-1 infection, the interaction with extracellular viral Tat protein seems to enhance angiogenesis in Kaposi's sarcoma lesions.

Homo sapiens (taxid: 9606)

>sp|P08648|ITA5_HUMAN Integrin alpha-5 OS=Homo sapiens GN=ITGA5 PE=1 SV=2

 Score =  164 bits (415), Expect = 1e-39,   Method: Compositional matrix adjust.
 Identities = 113/333 (33%), Positives = 170/333 (51%), Gaps = 33/333 (9%)

Query: 21  TKEGPPTDDGSYMGYSVASGFFSGE--SGVAVGIPRGARLLGKVALYT-TNMTNLQNITG 77
           T++     D SY+GYSVA G FSG+       G+P+G    G V +   +++ +L N +G
Sbjct: 260 TRQASSIYDDSYLGYSVAVGEFSGDDTEDFVAGVPKGNLTYGYVTILNGSDIRSLYNFSG 319

Query: 78  EQLGAYFAYAVTTSDVDGDGADDLIIGAPLYTNPTNNVGHYETGRIYVVYQGKETYKFRR 137
           EQ+ +YF YAV  +DV+GDG DDL++GAPL  + T +    E GR+YV  Q     +   
Sbjct: 320 EQMASYFGYAVAATDVNGDGLDDLLVGAPLLMDRTPDGRPQEVGRVYVYLQHPAGIEPTP 379

Query: 138 LHTRDGKNSKARFGLSLCNLGDINKDGFGDFAVGAPYDGPNERGVVYIYHGSPIGARENP 197
             T  G +   RFG SL  LGD+++DG+ D A+GAP+ G  ++GVV+++ G P G    P
Sbjct: 380 TLTLTGHDEFGRFGSSLTPLGDLDQDGYNDVAIGAPFGGETQQGVVFVFPGGPGGLGSKP 439

Query: 198 SQIITAEEVNFGLQGSLTTFGFSLAGGVDLDENQYPDLVIGAYESNTAFVLRSTAPYDG- 256
           SQ++   +  +    +   FG +L GG DLD N YPDL++G++  + A V R        
Sbjct: 440 SQVL---QPLWAASHTPDFFGSALRGGRDLDGNGYPDLIVGSFGVDKAVVYRGRPIVSAS 496

Query: 257 -----------PNERGVVYIYHGSPIGARE-----NPSQIITAEEVNFGLQELNVQILLD 300
                      P ER       G+P+         N S    A+ + F      V++ LD
Sbjct: 497 ASLTIFPAMFNPEERSCS--LEGNPVACINLSFCLNASGKHVADSIGF-----TVELQLD 549

Query: 301 SKKPKS--PRMFFLSDEGKNVINQTLLLIKGTQ 331
            +K K    R  FL+   +  + QTLL+  G +
Sbjct: 550 WQKQKGGVRRALFLASR-QATLTQTLLIQNGAR 581

Integrin alpha-5/beta-1 is a receptor for fibronectin and fibrinogen. It recognizes the sequence R-G-D in its ligands. In case of HIV-1 infection, the interaction with extracellular viral Tat protein seems to enhance angiogenesis in Kaposi's sarcoma lesions.

Homo sapiens (taxid: 9606)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	357
157136654	780	integrin alpha-ps [Aedes aegypti] gi|108	0.927	0.424	0.485	3e-88
328697418	1586	PREDICTED: integrin alpha-PS2-like [Acyr	0.907	0.204	0.538	2e-87
170064445	1300	integrin alpha-PS2 [Culex quinquefasciat	0.929	0.255	0.484	1e-85
242019521	1348	Integrin alpha-PS2 precursor, putative [	0.915	0.242	0.493	4e-82
312383478	1478	hypothetical protein AND_03397 [Anophele	0.890	0.215	0.481	2e-80
380021246	1662	PREDICTED: LOW QUALITY PROTEIN: integrin	0.885	0.190	0.493	7e-80
347963030	1540	AGAP000032-PA [Anopheles gambiae str. PE	0.952	0.220	0.471	8e-80
321468749	1032	hypothetical protein DAPPUDRAFT_304328 [	0.969	0.335	0.470	9e-80
307200011	1501	Integrin alpha-PS2 [Harpegnathos saltato	0.882	0.209	0.5	1e-79
340723526	1634	PREDICTED: integrin alpha-PS2-like [Bomb	0.915	0.200	0.502	1e-79

>gi|157136654|ref|XP_001663809.1| integrin alpha-ps [Aedes aegypti] gi|108869905|gb|EAT34130.1| AAEL013600-PA, partial [Aedes aegypti]

 Score =  331 bits (849), Expect = 3e-88,   Method: Compositional matrix adjust.
 Identities = 182/375 (48%), Positives = 246/375 (65%), Gaps = 44/375 (11%)

Query: 5   GQVISQNLYD-RPEFKATKEGPPTDDGSYMGYSVASGFFSGES--GVAVGIPRGARLLGK 61
           GQ+ S +L + R +  +T E   ++D SY+GYS A+G F+G+   GVAVG+PRG  LLGK
Sbjct: 42  GQIYSFSLNNPRDKVYSTGESTSSEDDSYLGYSSATGDFNGDGTMGVAVGMPRGGGLLGK 101

Query: 62  VALYTTNMTNLQNITGEQLGAYFAYAVTTSDVDGDGADDLIIGAPLYTNPTNNVGHYETG 121
           V +++ NMTN QNITGEQ+GAYF YA+   DVDGD  DDLI+GAP+YT P NN G YETG
Sbjct: 102 VLIFSWNMTNQQNITGEQIGAYFGYAIAVVDVDGDKLDDLIVGAPMYTEP-NNEGKYETG 160

Query: 122 RIYVVYQGKETYKFRRLHTRDGKNSKARFGLSLCNLGDINKDGFGDFAVGAPYDGPNERG 181
           R+Y++YQ K   KF+ + TRDG NSKARFGLS+C+LGDIN DG+GDFAVGAPYDGP+ RG
Sbjct: 161 RVYIIYQDK-INKFQEVETRDGVNSKARFGLSVCSLGDINLDGYGDFAVGAPYDGPHGRG 219

Query: 182 VVYIYHGSPIGARENPSQIITAEEVNFGLQGSLTTFGFSLAGGVDLDENQYPDLVIGAYE 241
            VY+YHGS  G    PSQ+I AE+++   +  ++TFGFS+AGG+DLD NQYPD+V+GAY+
Sbjct: 220 AVYVYHGSSNGPLAKPSQVIMAEDISGASR--ISTFGFSVAGGIDLDGNQYPDMVVGAYD 277

Query: 242 SNTAFVLRSTAPYDGPNERGVVYIYHGSPIGARENPSQIITAEEVNFGLQ---------- 291
           S+ A V +S            V +   S +   EN  ++I+ E+ N  L+          
Sbjct: 278 SDKALVFKSRP----------VAVMEASTLFETEN--KLISLEDRNCTLRDRKQVPCTVV 325

Query: 292 ---------------ELNVQILLDSKKPKSPRMFFLSDEGKNVINQTLLLIKGTQFCKST 336
                          ++ V  +LDSKK ++PRMFFL++EG+N+ NQ++ L +G   CKS 
Sbjct: 326 NSCMKYNGINVPPTLDIEVSWVLDSKKSRNPRMFFLNEEGRNIRNQSIRLYRGKLECKSE 385

Query: 337 VDMVCEAERPLCTPI 351
              + E  R   TP+
Sbjct: 386 RVYIAENIRDKITPL 400

Source: Aedes aegypti

Species: Aedes aegypti

Genus: Aedes

Family: Culicidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|328697418|ref|XP_001945967.2| PREDICTED: integrin alpha-PS2-like [Acyrthosiphon pisum]

 Score =  328 bits (841), Expect = 2e-87,   Method: Compositional matrix adjust.
 Identities = 189/351 (53%), Positives = 244/351 (69%), Gaps = 27/351 (7%)

Query: 5   GQVISQNLYDRPEFKATKEGPPTDDGSYMGYSVASGFFS--GESGVAVGIPRGARLLGKV 62
           GQ  SQNL+ RP+  +T EGPP DD SY+GYSVA G F    ESG AVG+PRG  L GKV
Sbjct: 234 GQFYSQNLHSRPDVFSTNEGPPADDDSYLGYSVAVGAFGFGSESGAAVGMPRGGGLFGKV 293

Query: 63  ALYTTNMTNLQNITGEQLGAYFAYAVTTSDVDGDGADDLIIGAPLYTNPTNNVGHYETGR 122
            LY+TN+ NL NITG+QLGAYF Y++  SDVDGDG DD+IIGAPLY+  + N G YETG+
Sbjct: 294 LLYSTNLINLYNITGDQLGAYFGYSICVSDVDGDGGDDIIIGAPLYSEFSKNDGSYETGK 353

Query: 123 IYVVYQGKETYKFRRLHTRDGKNSKARFGLSLCNLGDINKDGFGDFAVGAPYDGPNERGV 182
           +Y VY  KE YKF   +TR G NSK+RFGL+L  LGDIN+DG+GDFAVGAPYDGPNE G 
Sbjct: 354 VY-VYLKKEGYKFNERNTRMGFNSKSRFGLALTGLGDINRDGYGDFAVGAPYDGPNELGA 412

Query: 183 VYIYHGSPIGARENPSQIITAEEVNFGLQGSLTTFGFSLAGGVDLDENQYPDLVIGAYES 242
           VYIYHG+  G RE  SQ+I +E+V+ G++  ++TFGFSL+GG DLD NQYPDLV+GAYES
Sbjct: 413 VYIYHGTKTGVREKYSQVIKSEDVSVGVR-PISTFGFSLSGGTDLDNNQYPDLVVGAYES 471

Query: 243 NTAFVLRSTAPYDGPNERGVVYIYHGS-----PIGARENPSQ---IITAEEVNFGLQ--- 291
           + A+ ++S      P  +    +Y  S      +  RE  ++   ++    ++  LQ   
Sbjct: 472 DIAYFMKSR-----PVAQMTTSVYFKSENKQIALERRECTTKDGTLVPCLFLSTCLQYTG 526

Query: 292 -----ELNV--QILLDSKKPKSPRMFFLSDEGKNVINQTLLLIKGTQFCKS 335
                +LN+  Q++LD+KKPKSPRMFFL +E ++V+N +L L K  Q CK+
Sbjct: 527 IGVDDQLNIEMQLVLDAKKPKSPRMFFLLEENRSVLNHSLTLDKNDQSCKT 577

Source: Acyrthosiphon pisum

Species: Acyrthosiphon pisum

Genus: Acyrthosiphon

Family: Aphididae

Order: Hemiptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|170064445|ref|XP_001867528.1| integrin alpha-PS2 [Culex quinquefasciatus] gi|167881858|gb|EDS45241.1| integrin alpha-PS2 [Culex quinquefasciatus]

 Score =  323 bits (827), Expect = 1e-85,   Method: Compositional matrix adjust.
 Identities = 182/376 (48%), Positives = 247/376 (65%), Gaps = 44/376 (11%)

Query: 4   SGQVISQNLYD-RPEFKATKEGPPTDDGSYMGYSVASGFFSGES--GVAVGIPRGARLLG 60
           +GQ+ S +L + R +  +T E   ++D SY+GYS A+G F+G+   GVAVG+PRG  LLG
Sbjct: 10  AGQIYSFSLNNPRDKVYSTGESTSSEDDSYLGYSSATGDFTGDGNLGVAVGMPRGGGLLG 69

Query: 61  KVALYTTNMTNLQNITGEQLGAYFAYAVTTSDVDGDGADDLIIGAPLYTNPTNNVGHYET 120
           KV L++ NMTNL+NITGEQ+GAYF Y++ T DVDGD  DDLI+GAP++T P N  G YET
Sbjct: 70  KVLLFSWNMTNLKNITGEQIGAYFGYSIATVDVDGDKLDDLIVGAPMHTEP-NTEGKYET 128

Query: 121 GRIYVVYQGKETYKFRRLHTRDGKNSKARFGLSLCNLGDINKDGFGDFAVGAPYDGPNER 180
           GR+Y+++Q K   KF  + TRDG NSKARFGLS+C+LGDIN DGFGDFAVGAPYDGPN  
Sbjct: 129 GRVYIIFQDKAN-KFEGIETRDGVNSKARFGLSVCSLGDINLDGFGDFAVGAPYDGPNGN 187

Query: 181 GVVYIYHGSPIGARENPSQIITAEEVNFGLQGSLTTFGFSLAGGVDLDENQYPDLVIGAY 240
           G VY+YHGSP G  E PSQ+I AE++    +  ++TFGFS+AGG+DLD NQYPD+V+GAY
Sbjct: 188 GAVYVYHGSPTGPLEKPSQVIFAEDIAGASR--ISTFGFSVAGGIDLDGNQYPDMVVGAY 245

Query: 241 ESNTAFVLRSTAPYDGPNERGVVYIYHGSPIGARENPSQIITAEEVNFGLQ--------- 291
            ++ A V +S            V +   S +   EN  ++I+ E+ N  L+         
Sbjct: 246 STDKALVFKSRP----------VAVMEASTLFETEN--KLISLEDRNCTLRDRKQVPCTV 293

Query: 292 ----------------ELNVQILLDSKKPKSPRMFFLSDEGKNVINQTLLLIKGTQFCKS 335
                           ++ V  +LDSKKP++PRMFFL++EG+N+ NQ++ L +G   C+S
Sbjct: 294 VNSCMKYNGINVPPTLDIEVSWVLDSKKPRNPRMFFLNEEGRNIRNQSMRLYRGKLECRS 353

Query: 336 TVDMVCEAERPLCTPI 351
               + E  R   TP+
Sbjct: 354 ERVYIAENIRDKITPL 369

Source: Culex quinquefasciatus

Species: Culex quinquefasciatus

Genus: Culex

Family: Culicidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|242019521|ref|XP_002430209.1| Integrin alpha-PS2 precursor, putative [Pediculus humanus corporis] gi|212515305|gb|EEB17471.1| Integrin alpha-PS2 precursor, putative [Pediculus humanus corporis]

 Score =  311 bits (796), Expect = 4e-82,   Method: Compositional matrix adjust.
 Identities = 188/381 (49%), Positives = 243/381 (63%), Gaps = 54/381 (14%)

Query: 7   VISQNLYDRPEFKATKEGPPTDDGSYMGYSVASGFFS--GESGVAVGIPRGARLLGKVAL 64
           + +QN   RPE  AT EG P DD SY+GYSVA+G F   GE GVAVG+PRGA L GKV L
Sbjct: 239 LYAQNPNKRPEVLATSEGSPQDDDSYLGYSVAAGDFEGRGEGGVAVGMPRGAGLFGKVVL 298

Query: 65  YTTNMTNLQNITGEQLGAYFAYAVTTSDVDGDGADDLIIGAPLYTNPTNNVGHYETGRIY 124
           Y+ N+TNLQN+TG QLG+YF+Y++   DVDGDG DD+I+GAPL+T+  NN G YE GR+Y
Sbjct: 299 YSVNLTNLQNLTGHQLGSYFSYSLAVIDVDGDGLDDVIVGAPLHTDLNNNEGKYENGRVY 358

Query: 125 VVYQ----GKETY--KFRRLHTRDGKNSKARFGLSLCNLGDINKDGFGDFAVGAPYDGPN 178
           V +Q     ++ Y  +F +   RDGKNSK RFGLS+  LGD NKDG+GDFAVGAPYDG  
Sbjct: 359 VYFQEPRIDEDGYYSRFVKYEFRDGKNSKGRFGLSVAALGDTNKDGYGDFAVGAPYDGAE 418

Query: 179 ERGVVYIYHGSPIGARENPSQIITAEEVNFGLQGSLTTFGFSLAGGVDLDENQYPDLVIG 238
            RG VYIYHG   G RE+ SQ+I AE+    L    +TFGFS+AGG+D+D NQYPD+++G
Sbjct: 419 GRGAVYIYHGKKGGVRESYSQVIRAED----LSVPTSTFGFSIAGGLDMDNNQYPDMIVG 474

Query: 239 AYESNTAFVLRSTAPYDGPNERGVVYIYHGSPIGAR---ENPSQIITAEEVNFGLQ---- 291
           AYES+TA   RS         R VV +     + AR    + ++ I+ EE N  L+    
Sbjct: 475 AYESDTALFFRS---------RPVVKM-----VDARVSFNSKTKQISLEEENCTLKDYSK 520

Query: 292 ---------------------ELNVQILLDSKKPKSPRMFFLSDEGKNVINQTLLLIKGT 330
                                ++++ I LDSKKPKSPRMFFL++EGK++ N+T+ L KG 
Sbjct: 521 VPCIYLQACLKYNGVEVDNQLDVDLGIALDSKKPKSPRMFFLNEEGKSIKNETIRLTKGE 580

Query: 331 QFCKSTVDMVCEAERPLCTPI 351
             C+S    V +  R   TP+
Sbjct: 581 LSCQSYYVYVKQNIRDKLTPL 601

Source: Pediculus humanus corporis

Species: Pediculus humanus

Genus: Pediculus

Family: Pediculidae

Order: Phthiraptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|312383478|gb|EFR28551.1| hypothetical protein AND_03397 [Anopheles darlingi]

 Score =  305 bits (782), Expect = 2e-80,   Method: Compositional matrix adjust.
 Identities = 174/361 (48%), Positives = 230/361 (63%), Gaps = 43/361 (11%)

Query: 21  TKEGPPTDDGSYMGYSVASGFFSGE--SGVAVGIPRGARLLGKVALYTTNMTNLQNITGE 78
           T E    +D SY+GYS  +G F+G+   GVAVG PRGA LLGKV +Y  NMTN QNITGE
Sbjct: 117 TLEDKKDEDDSYLGYSATTGDFNGDGTQGVAVGKPRGAGLLGKVLIYAWNMTNQQNITGE 176

Query: 79  QLGAYFAYAVTTSDVDGDGADDLIIGAPLYTNPTNNVGHYETGRIYVVYQGK--ETYKFR 136
           Q+GAYF Y++   DVDGDG DDLIIGAP++T P NN G YETGR+Y++Y G   +  +F 
Sbjct: 177 QIGAYFGYSLAAVDVDGDGLDDLIIGAPMHTEP-NNEGKYETGRVYIIYHGSGADQRRFG 235

Query: 137 RLHTRDGKNSKARFGLSLCNLGDINKDGFGDFAVGAPYDGPNERGVVYIYHGSPIGAREN 196
            L TRDG  S+ARFGLS+C+L DIN DG+GDFAVGAPYDGP+ RG VY+++G+  G    
Sbjct: 236 ELETRDGTMSRARFGLSVCSLADINLDGYGDFAVGAPYDGPSGRGAVYVFYGARTGTLAK 295

Query: 197 PSQIITAEEVNFGLQGSLTTFGFSLAGGVDLDENQYPDLVIGAYESNTAFVLRSTAPYDG 256
           PSQ++ AEE+ +G+ G L+TFGFSLAGG+DLD NQYPDL +GAY+++   V RS      
Sbjct: 296 PSQVLQAEELTWGVPGRLSTFGFSLAGGIDLDGNQYPDLAVGAYDTDKVLVFRSRP---- 351

Query: 257 PNERGVVYIYHGSPIGARENPSQIITAEEVNFGLQELNVQI------------------- 297
                 V     S +   EN  ++I+ +E N  L+    Q+                   
Sbjct: 352 ------VATMEASTLFETEN--KLISLDERNCTLERTQKQVACTVVNSCLKYGGINVPPM 403

Query: 298 -------LLDSKKPKSPRMFFLSDEGKNVINQTLLLIKGTQFCKSTVDMVCEAERPLCTP 350
                   LD++ P+SPR+FFL+DEG+NV+NQ++ L +G   C+S    V E+ R   TP
Sbjct: 404 LDIEIGWTLDARSPRSPRLFFLNDEGRNVLNQSMRLYRGKLECRSERVYVGESVRDKITP 463

Query: 351 I 351
           +
Sbjct: 464 L 464

Source: Anopheles darlingi

Species: Anopheles darlingi

Genus: Anopheles

Family: Culicidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|380021246|ref|XP_003694481.1| PREDICTED: LOW QUALITY PROTEIN: integrin alpha-PS2-like [Apis florea]

 Score =  303 bits (777), Expect = 7e-80,   Method: Compositional matrix adjust.
 Identities = 177/359 (49%), Positives = 234/359 (65%), Gaps = 43/359 (11%)

Query: 4   SGQVISQNLYDRPEFKATKEGPPTDDGSYMGYSVASGFF--SGESGVAVGIPRGARLLGK 61
           SGQ  SQ L  R +   TKEGP T+D SYMGYSV SG F  +G+SG AVG+PRG+ LLGK
Sbjct: 279 SGQAFSQPLNGRAKIMYTKEGPATEDDSYMGYSVTSGDFIGNGDSGTAVGVPRGSDLLGK 338

Query: 62  VALYTTNMTNLQNITGEQLGAYFAYAVTTSDVDGDGADDLIIGAPLYTNPTNNVGHYETG 121
           V L+T+NMTN +NITGEQ+GAYF YAV + D+DGDG DDLI+GAP+YT P N     ETG
Sbjct: 339 VLLFTSNMTNPRNITGEQMGAYFGYAVASGDIDGDGLDDLIVGAPMYTVPDNPEMTIETG 398

Query: 122 RIYVVYQGKETYKFRRLHTRDGKNSKARFGLSLCNLGDINKDGFGDFAVGAPYDGPNERG 181
           R+YV+YQG    KFR++ +RDG++++ RFGLSL +LGDI++DG+GDF VGAPY GP   G
Sbjct: 399 RVYVIYQGVGPEKFRKVDSRDGESNRGRFGLSLASLGDIDRDGYGDFVVGAPYGGPRGHG 458

Query: 182 VVYIYHGSPIGARENPSQIITAEEVNFGLQGSLTTFGFSLAGGVDLDENQYPDLVIGAYE 241
            VYIYHGS  G  E  SQ I AE ++      + TFGFS+AGG+DLD N YPD+V+GAYE
Sbjct: 459 AVYIYHGSSTGVLEKYSQAIHAENLDV----PIDTFGFSVAGGLDLDGNHYPDMVVGAYE 514

Query: 242 SNTAFVLRSTAPYDGPNERGVVYIYHGSPIGARENPSQIITAEEVNFGLQE--------- 292
           S+TA   RS         R V+ +       + +  S++I+ ++ N  L +         
Sbjct: 515 SSTAVFFRS---------RPVIKM---DSYVSFDLESKLISLDDRNCTLSDGSRVTCLLL 562

Query: 293 ----------------LNVQILLDSKKPKSPRMFFLSDEGKNVINQTLLLIKGTQFCKS 335
                            N+Q +LD KK KSPR+FFL  EG+N +N+T+++ +  QFC++
Sbjct: 563 RACXKYNGDGVFPKHNFNIQYVLDVKKTKSPRLFFLELEGRNTMNRTIMVDRDRQFCRT 621

Source: Apis florea

Species: Apis florea

Genus: Apis

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|347963030|ref|XP_311131.5| AGAP000032-PA [Anopheles gambiae str. PEST] gi|333467393|gb|EAA06518.5| AGAP000032-PA [Anopheles gambiae str. PEST]

 Score =  303 bits (776), Expect = 8e-80,   Method: Compositional matrix adjust.
 Identities = 174/369 (47%), Positives = 232/369 (62%), Gaps = 29/369 (7%)

Query: 5   GQVISQNLYDRPEFKATK--EGPPTDDGSYMGYSVASGFFSGE--SGVAVGIPRGARLLG 60
           GQ+ S +L + P+ K  K  E    +D SY+GYS  +G F+G+   GVAVG PRGARLLG
Sbjct: 253 GQIYSFSL-NNPKDKVYKTLEDTKKEDDSYLGYSSTTGDFNGDGTQGVAVGKPRGARLLG 311

Query: 61  KVALYTTNMTNLQNITGEQLGAYFAYAVTTSDVDGDGADDLIIGAPLYTNPTNNVGHYET 120
           KV +Y+ NMTN QNITGEQ+GAYF Y++   DVDGD  DDLIIGAP+YT P NN G YET
Sbjct: 312 KVLIYSWNMTNQQNITGEQIGAYFGYSLAAVDVDGDKLDDLIIGAPMYTEP-NNEGKYET 370

Query: 121 GRIYVVYQGKETY-KFRRLHTRDGKNSKARFGLSLCNLGDINKDGFGDFAVGAPYDGPNE 179
           GR+Y++YQG     +FR L TRDG NSKARFGL++C+L D+N DG+GDFAVGAPYDGPN 
Sbjct: 371 GRVYIMYQGAAADGRFRELDTRDGVNSKARFGLAVCSLADLNLDGYGDFAVGAPYDGPNG 430

Query: 180 RGVVYIYHGSPIGARENPSQIITAEEVNFGLQGSLTTFGFSLAGGVDLDENQYPDLVIGA 239
           RG VYI++GS  G     SQ+I AE++  G+   L+TFGFSL+GG+DLD NQYPD+V+GA
Sbjct: 431 RGAVYIFYGSRTGPLAKASQVIQAEDMA-GVT-RLSTFGFSLSGGIDLDGNQYPDMVVGA 488

Query: 240 YESNTAFVLRS-------TAPYDGPNERGVVYIYHGSPIGARENPSQIITAEEVNFGLQ- 291
           YES+ A V ++        +    P  + +          A +  ++ +    VN  L+ 
Sbjct: 489 YESDKALVFKARPVAAMVASTLFEPKSKLIALDVKNC---ALKRTNKTVPCTVVNSCLKY 545

Query: 292 ---------ELNVQILLDSKKPKSPRMFFLSDEGKNVINQTLLLIKGTQFCKSTVDMVCE 342
                    ++ +   LD++K ++PRMFFL  EG +   Q + L +G   C      V +
Sbjct: 546 NGINVPPMLDIEISWTLDARKARNPRMFFLDHEGNHTRTQLMRLARGKLECIEDKVYVAD 605

Query: 343 AERPLCTPI 351
             R   TP+
Sbjct: 606 NIRDKITPL 614

Source: Anopheles gambiae str. PEST

Species: Anopheles gambiae

Genus: Anopheles

Family: Culicidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|321468749|gb|EFX79732.1| hypothetical protein DAPPUDRAFT_304328 [Daphnia pulex]

 Score =  303 bits (775), Expect = 9e-80,   Method: Compositional matrix adjust.
 Identities = 174/370 (47%), Positives = 224/370 (60%), Gaps = 24/370 (6%)

Query: 5   GQVISQNLYDRPEFKATKEGPPTDDGSYMGYSVASGFFS--GESGVAVGIPRGARLLGKV 62
           GQ+ SQ L+ R +  +T EG   +D SY+GYS A G     G S VAVG+PRGA L GKV
Sbjct: 191 GQLFSQGLFSRLDVLSTTEGSAAEDDSYLGYSSAVGDLDDDGRSDVAVGMPRGANLTGKV 250

Query: 63  ALYTTNMTNLQNITGEQLGAYFAYAVTTSDVDGDGADDLIIGAPLYTNPTNNVGHYETGR 122
            L T+N+TN+ NITG+QLGAYF Y VT +DV+ DG  D+I+GAPLY+N  N  G YE GR
Sbjct: 251 VLLTSNLTNIVNITGQQLGAYFGYCVTVTDVNNDGLQDVIVGAPLYSNYANTEGKYEMGR 310

Query: 123 IYVVYQGKETYK-FRRLHTRD-GKNSKARFGLSLCNLGDINKDGFGDFAVGAPYDGPNER 180
           ++V YQ     + FRR    D G+ SKARFGL++  LGDIN DGF D AVGAPYDGP+E+
Sbjct: 311 VHVYYQSARLRQSFRRSDVLDGGEVSKARFGLAVSALGDINLDGFNDIAVGAPYDGPSEK 370

Query: 181 GVVYIYHGSPIGARENPSQIITAEEVNFGLQGSLTTFGFSLAGGVDLDENQYPDLVIGAY 240
           G VYIYHGS  G R   SQ+I AEEV+      L+TFGFSLAGG+D+D N+YPD+++GAY
Sbjct: 371 GAVYIYHGSSKGIRTKASQVIYAEEVS----SELSTFGFSLAGGMDVDGNEYPDVLVGAY 426

Query: 241 ESNTAFVLRSTAPYDGPNERGVVYIYHGSPIGARENPSQIITAEEVNF------------ 288
           +S+    LRS  P    N   + Y      I        +     V              
Sbjct: 427 DSDRIVYLRSR-PVVYLNTVDINYDVESKQIDLENKNCSLFDGTAVACVPLTLCFEYSGR 485

Query: 289 ---GLQELNVQILLDSKKPKSPRMFFLSDEGKNVINQTLLLIKGTQFCKSTVDMVCEAER 345
                +E+ VQ++LDSK PK+PR+ FLS+E K+ +N+T  L KG + C++    V    R
Sbjct: 486 GVNNREEVMVQLILDSKSPKNPRLHFLSEENKSSLNETYQLAKGQRACRTYTVYVRPLIR 545

Query: 346 PLCTPITPAV 355
              TPI   V
Sbjct: 546 DKLTPIESEV 555

Source: Daphnia pulex

Species: Daphnia pulex

Genus: Daphnia

Family: Daphniidae

Order: Diplostraca

Class: Branchiopoda

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|307200011|gb|EFN80357.1| Integrin alpha-PS2 [Harpegnathos saltator]

 Score =  303 bits (775), Expect = 1e-79,   Method: Compositional matrix adjust.
 Identities = 179/358 (50%), Positives = 234/358 (65%), Gaps = 43/358 (12%)

Query: 5   GQVISQNLYDRPEFKATKEGPPTDDGSYMGYSVASGFF--SGESGVAVGIPRGARLLGKV 62
           GQ ISQ L +  +  +TKEGP  +D SY+GYSV +G F  +G++G+AVG+PRG+RLLGKV
Sbjct: 100 GQAISQPLNNDSKVMSTKEGPAEEDDSYLGYSVTAGDFVGNGDNGMAVGVPRGSRLLGKV 159

Query: 63  ALYTTNMTNLQNITGEQLGAYFAYAVTTSDVDGDGADDLIIGAPLYTNPTNNVGHYETGR 122
            L T+NMTN QNITGEQ+GAYF YA+ + D+DGDG DDLI+GAP+YT P N     ETGR
Sbjct: 160 ILLTSNMTNPQNITGEQMGAYFGYAMASGDIDGDGLDDLIVGAPMYTIPDNPEMTIETGR 219

Query: 123 IYVVYQGKETYKFRRLHTRDGKNSKARFGLSLCNLGDINKDGFGDFAVGAPYDGPNERGV 182
           +YV+YQG +  KFR+  TRDG++++ RFGLSL +LGDI+ DG+GDF VGAPY GPN RG 
Sbjct: 220 VYVMYQGTDIEKFRKFDTRDGESNRGRFGLSLASLGDIDFDGYGDFVVGAPYGGPNGRGA 279

Query: 183 VYIYHGSPIGARENPSQIITAEEVNFGLQGSLTTFGFSLAGGVDLDENQYPDLVIGAYES 242
           VYIY+GS +G  E  SQ+I AE+++  +Q    TFGFS+AGG+DLD N YPDLV+GAYES
Sbjct: 280 VYIYYGSRVGVLEKYSQVIHAEDLDSPVQ----TFGFSVAGGLDLDGNVYPDLVVGAYES 335

Query: 243 NTAFVLRSTAPYDGPNERGVVYIYHGSPIGARENPSQIITAEEVNFGLQE---------- 292
             A   RS      P  +   Y+  GS        S++I+ +  N  L +          
Sbjct: 336 GAAMFFRSR-----PVIKMDSYVTFGS-------ESKLISLDIKNCTLSDDTRVTCLPLR 383

Query: 293 ---------------LNVQILLDSKKPKSPRMFFLSDEGKNVINQTLLLIKGTQFCKS 335
                           NVQ +LD KK K+PR+FFL  EGKN +N T+ +    QFC++
Sbjct: 384 ACFRYRGDGLLMRHNFNVQYVLDVKKTKNPRLFFLELEGKNTMNHTISMEYDRQFCRT 441

Source: Harpegnathos saltator

Species: Harpegnathos saltator

Genus: Harpegnathos

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|340723526|ref|XP_003400140.1| PREDICTED: integrin alpha-PS2-like [Bombus terrestris]

 Score =  303 bits (775), Expect = 1e-79,   Method: Compositional matrix adjust.
 Identities = 175/348 (50%), Positives = 230/348 (66%), Gaps = 21/348 (6%)

Query: 4   SGQVISQNLYDRPEFKATKEGPPTDDGSYMGYSVASGFF--SGESGVAVGIPRGARLLGK 61
           SGQ  SQ L  R     TKEGP T+D SYMGYSV +G F  +G+SG AVG+PRG+ LLGK
Sbjct: 261 SGQAFSQPLNSRARIMFTKEGPATEDDSYMGYSVTTGDFIGNGDSGTAVGVPRGSDLLGK 320

Query: 62  VALYTTNMTNLQNITGEQLGAYFAYAVTTSDVDGDGADDLIIGAPLYTNPTNNVGHYETG 121
           V ++T+NMTN +NITGEQ+GAYF YAVT+ D+DGDG DDLI+GAP+YT P N     ETG
Sbjct: 321 VIIFTSNMTNHRNITGEQMGAYFGYAVTSGDIDGDGLDDLIVGAPMYTVPDNPEMTIETG 380

Query: 122 RIYVVYQGKETYKFRRLHTRDGKNSKARFGLSLCNLGDINKDGFGDFAVGAPYDGPNERG 181
           R+YV+YQG    KFR++ +RDG++++ RFGLSL +LGDI++DG+GDF VGAPY G    G
Sbjct: 381 RVYVIYQGVGAEKFRKVDSRDGESNRGRFGLSLASLGDIDRDGYGDFVVGAPYGGLRGHG 440

Query: 182 VVYIYHGSPIGARENPSQIITAEEVNFGLQGSLTTFGFSLAGGVDLDENQYPDLVIGAYE 241
            VYIYHGS  G  E  SQ+I AE ++      + TFGFS++GG+DLD N+YPDLV+GAYE
Sbjct: 441 AVYIYHGSSTGVLEKYSQVIYAENLDV----PVNTFGFSVSGGLDLDGNRYPDLVVGAYE 496

Query: 242 SNTAFVLRST--------APYD------GPNERGVVYIYHGSPIGARENPSQIITAEEVN 287
           S TA   RS           +D        ++R    +  GS +      +    + E  
Sbjct: 497 SATAIFFRSRPVIKMDSYVSFDLESKLISLDDRNCT-LSDGSRVTCLPLRACFKYSGEGV 555

Query: 288 FGLQELNVQILLDSKKPKSPRMFFLSDEGKNVINQTLLLIKGTQFCKS 335
           F     N+Q  LD KK KSPR+FFL  EG+N +N+T+++ +  QFC++
Sbjct: 556 FSRHNFNIQYALDVKKTKSPRLFFLELEGRNTMNRTIMVDRERQFCRT 603

Source: Bombus terrestris

Species: Bombus terrestris

Genus: Bombus

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	357
FB|FBgn0001250	1396	if "inflated" [Drosophila mela	0.969	0.247	0.420	1.2e-65
ZFIN|ZDB-GENE-031116-52	1053	itga5 "integrin, alpha 5 (fibr	0.719	0.244	0.353	2.2e-40
UNIPROTKB|F1NSA4	867	ITGA8 "Integrin alpha-8" [Gall	0.638	0.262	0.378	4.7e-40
MGI|MGI:109442	1062	Itga8 "integrin alpha 8" [Mus	0.638	0.214	0.382	9.1e-38
UNIPROTKB|P26009	1044	ITGA8 "Integrin alpha-8" [Gall	0.638	0.218	0.378	1.1e-37
UNIPROTKB|F1PVR1	995	ITGA8 "Uncharacterized protein	0.638	0.229	0.378	9.3e-37
UNIPROTKB|F1NGX1	1034	ITGAV "Integrin alpha-V" [Gall	0.633	0.218	0.384	1.3e-36
UNIPROTKB|E1BNM2	1062	ITGA8 "Uncharacterized protein	0.638	0.214	0.374	1.4e-36
UNIPROTKB|P53708	1063	ITGA8 "Integrin alpha-8" [Homo	0.638	0.214	0.370	1.4e-36
ZFIN|ZDB-GENE-060616-382	1045	itgav "integrin, alpha V" [Dan	0.635	0.217	0.363	2.2e-36

FB|FBgn0001250 if "inflated" [Drosophila melanogaster (taxid:7227)]

 Score = 679 (244.1 bits), Expect = 1.2e-65, P = 1.2e-65
 Identities = 155/369 (42%), Positives = 219/369 (59%)

Query:     4 SGQVISQNLYDRPEFK--ATKEGPPTDDGSYMGYSVASGFFSGESG--VAVGIPRGARLL 59
             +G + S +   RPE +  +T E    +D SY+GYS+ +G F G+    VA+G+PRG  L+
Sbjct:   248 TGGMASSHDVTRPENQVFSTSESASVNDDSYLGYSMVTGDFDGDRSEDVAIGMPRGGNLV 307

Query:    60 GKVALYTTNMTNLQNITGEQLGAYFAYAVTTSXXXXXXXXXXXXXXPLYTNPTNNVGHYE 119
             G++ +   NM N+ NITG Q+G YF Y++ TS              P+YT+P N  G Y+
Sbjct:   308 GRIVVNRWNMANIFNITGRQIGEYFGYSLATSDVDGDGLDDLLIGAPMYTDPDNVEGKYD 367

Query:   120 TGRIYVVYQGKETYKFRRL--HTRDGKNSKARFGLSLCNLGDINKDGFGDFAVGAPYDGP 177
              GR+Y++ QG  T + R    H RDG +SK RFGL+L  LGD+N DG+GDFAVGAPYDGP
Sbjct:   368 VGRVYILLQGGPTEEKRWTTEHIRDGYHSKGRFGLALTTLGDVNGDGYGDFAVGAPYDGP 427

Query:   178 NERGVVYIYHGSPIGARENPSQIITAEEVNFGLQGSLTTFGFSLAGGVDLDENQYPDLVI 237
               RGVVYI+HGSP+G    PSQII +E++  G      TFGF+L+GG+D+D N YPDL +
Sbjct:   428 EGRGVVYIFHGSPMGPLAKPSQIIKSEQLVEGAPYP-RTFGFALSGGLDMDGNTYPDLAV 486

Query:   238 GAYESNTAFVLRS------TAPYDGPNERGVVYIYHGSPIGAREN---PSQIITAEEVNF 288
             GAY S+  F+ +S       A     +   ++ +   S    R++   P  ++T      
Sbjct:   487 GAYSSDQVFIFKSRPVAAVNAETSFASNSKLISLDDRSCQLVRDHKKVPCMLLTTCWSYT 546

Query:   289 G--LQE---LNVQILLDSKKPKSPRMFFLSDEGKNVINQTLLLIKGTQFC-KSTVDMVCE 342
             G  L E    +V  LLD+KK  +PRMFFL DEGKN+ NQT+ L  G ++C   TV ++ +
Sbjct:   547 GRYLPEQLDFDVSWLLDAKKLLNPRMFFLRDEGKNIRNQTIRLNYGQKYCLNETVYLLDK 606

Query:   343 AERPLCTPI 351
              +  L TP+
Sbjct:   607 VQDKL-TPL 614

GO:0004872 "receptor activity" evidence=ISS;IDA

GO:0007155 "cell adhesion" evidence=IMP;IDA

GO:0050839 "cell adhesion molecule binding" evidence=ISS;IDA

GO:0007476 "imaginal disc-derived wing morphogenesis" evidence=IEP;IMP;TAS

GO:0008305 "integrin complex" evidence=IEA;ISS;NAS;TAS

GO:0016477 "cell migration" evidence=TAS

GO:0016337 "cell-cell adhesion" evidence=TAS

GO:0007494 "midgut development" evidence=TAS

GO:0007160 "cell-matrix adhesion" evidence=ISS

GO:0007157 "heterophilic cell-cell adhesion" evidence=TAS

GO:0030239 "myofibril assembly" evidence=IMP

GO:0042383 "sarcolemma" evidence=IDA

GO:0016203 "muscle attachment" evidence=IGI;IMP

GO:0045185 "maintenance of protein location" evidence=IMP

GO:0007427 "epithelial cell migration, open tracheal system" evidence=TAS

GO:0007411 "axon guidance" evidence=IMP

GO:0007608 "sensory perception of smell" evidence=IGI

GO:0007431 "salivary gland development" evidence=TAS

GO:0007426 "tracheal outgrowth, open tracheal system" evidence=TAS

GO:0007475 "apposition of dorsal and ventral imaginal disc-derived wing surfaces" evidence=NAS

GO:0008360 "regulation of cell shape" evidence=IMP

GO:0035160 "maintenance of epithelial integrity, open tracheal system" evidence=IGI

GO:0005886 "plasma membrane" evidence=IDA

GO:0007414 "axonal defasciculation" evidence=IMP

GO:0007435 "salivary gland morphogenesis" evidence=IGI

ZFIN|ZDB-GENE-031116-52 itga5 "integrin, alpha 5 (fibronectin receptor, alpha polypeptide)" [Danio rerio (taxid:7955)]

 Score = 415 (151.1 bits), Expect = 2.2e-40, Sum P(2) = 2.2e-40
 Identities = 95/269 (35%), Positives = 152/269 (56%)

Query:    29 DGSYMGYSVASGFFSGESG--VAVGIPRGARLLGKVALYTTNMTNLQNITGEQLGAYFAY 86
             D +YMGYSVA G F+G+       G+PRG RL G+V++  +++  L+  TGEQ+G+Y+ Y
Sbjct:   256 DDTYMGYSVAVGEFTGDDDEDFVTGVPRGVRLHGQVSILNSSLDVLKMFTGEQMGSYYGY 315

Query:    87 AVTTSXXXXXXXXXXXXXXPLYTNPTNNVGHYETGRIYVVYQGKETYKFRRLHTRDGKNS 146
             +V  +              P++    ++    E GR+YV  Q        +L    G   
Sbjct:   316 SVAATDINNDGMMDLLVGAPMFMVRDSDGRLEELGRVYVYMQKGPLDLIPQLPHLTGTQM 375

Query:   147 KARFGLSLCNLGDINKDGFGDFAVGAPYDGPNERGVVYIYHGSPIGARENPSQIITAEEV 206
              ARFG S+  LGD+N+DG+ D A+ +P+ G +++G+V IY+G+  G RE PSQ+I+ +  
Sbjct:   376 FARFGSSITPLGDLNQDGYNDVAISSPFGGEDKQGLVLIYNGNAGGLREKPSQVISGQWA 435

Query:   207 NFGLQGSLTTFGFSLAGGVDLDENQYPDLVIGAYESNTAFVLRSTAPYDGPNERGVVYIY 266
             + GL     +FG++L GG DLD N YPDL++GA+ ++ A + RS  P    N   ++ +Y
Sbjct:   436 SAGLSAIPASFGYALRGGKDLDNNGYPDLIVGAFGADKAVLYRSR-PI--VNTSAILNVY 492

Query:   267 HGSPIGARENPSQIITAEEVNFGLQELNV 295
                PI    NP + + A  ++ G + L+V
Sbjct:   493 ---PIMI--NPEEKVCA--ISRGNETLHV 514

GO:0007155 "cell adhesion" evidence=IEA

GO:0008305 "integrin complex" evidence=IEA

GO:0001501 "skeletal system development" evidence=IMP

GO:0001756 "somitogenesis" evidence=IGI;IMP

GO:0016021 "integral to membrane" evidence=IEA;NAS

GO:0046982 "protein heterodimerization activity" evidence=IPI

GO:0007229 "integrin-mediated signaling pathway" evidence=IEA

GO:0016020 "membrane" evidence=IEA

GO:0085029 "extracellular matrix assembly" evidence=IMP

GO:0001968 "fibronectin binding" evidence=IGI

UNIPROTKB|F1NSA4 ITGA8 "Integrin alpha-8" [Gallus gallus (taxid:9031)]

 Score = 415 (151.1 bits), Expect = 4.7e-40, Sum P(2) = 4.7e-40
 Identities = 89/235 (37%), Positives = 134/235 (57%)

Query:    19 KATKEGPPTDDGSYMGYSVASGFFSGESG--VAVGIPRGARLLGKVALY-TTNMTNLQNI 75
             K T   PPT D +YMGYSVA+G F+G+S   +  G+PRGA+  G V++  ++++T +QN 
Sbjct:   241 KQTGVAPPTYDDNYMGYSVAAGEFTGDSEEELVAGVPRGAQNFGYVSIINSSDLTFIQNF 300

Query:    76 TGEQLGAYFAYAVTTSXXXXXXXXXXXXXXPLYTNPTNNVGHYETGRIYVVYQGKETYKF 135
             TGEQ+ +YF Y V  S              PL+          E G++Y+  Q +  + F
Sbjct:   301 TGEQMASYFGYTVAVSDVNNDGLDDILVGAPLFMEREFESKPKEVGQVYLYLQ-ESAFLF 359

Query:   136 RRLHTRDGKNSKARFGLSLCNLGDINKDGFGDFAVGAPYDGPNERGVVYIYHGSPIGARE 195
             R      G     RFG ++ +LGD+N+DG+ D AVGAP+ G + RG V IY+G   G + 
Sbjct:   360 RDPQILTGTEVFGRFGSAITHLGDLNQDGYNDIAVGAPFAGEDRRGKVLIYNGYSNGLKT 419

Query:   196 NPSQIITAEEVNFGLQGSLTTFGFSLAGGVDLDENQYPDLVIGAYESNTAFVLRS 250
             +PSQ++      +  Q   + FGF+L G  D+D+N YPDL++GA+ +  A V R+
Sbjct:   420 DPSQVLNGA---WASQSMPSGFGFTLRGDSDVDKNDYPDLIVGAFGAGKAVVYRA 471

GO:0008305 "integrin complex" evidence=IEA

GO:0007155 "cell adhesion" evidence=IEA

GO:0007229 "integrin-mediated signaling pathway" evidence=IEA

GO:0001656 "metanephros development" evidence=IEA

GO:0007613 "memory" evidence=IEA

GO:0030030 "cell projection organization" evidence=IEA

GO:0030198 "extracellular matrix organization" evidence=IEA

GO:0030511 "positive regulation of transforming growth factor beta receptor signaling pathway" evidence=IEA

GO:0042472 "inner ear morphogenesis" evidence=IEA

GO:0045177 "apical part of cell" evidence=IEA

GO:0045184 "establishment of protein localization" evidence=IEA

GO:0048745 "smooth muscle tissue development" evidence=IEA

GO:2000721 "positive regulation of transcription from RNA polymerase II promoter involved in smooth muscle cell differentiation" evidence=IEA

MGI|MGI:109442 Itga8 "integrin alpha 8" [Mus musculus (taxid:10090)]

 Score = 416 (151.5 bits), Expect = 9.1e-38, P = 9.1e-38
 Identities = 90/235 (38%), Positives = 131/235 (55%)

Query:    19 KATKEGPPTDDGSYMGYSVASGFFSGESG--VAVGIPRGARLLGKVALY-TTNMTNLQNI 75
             K T   P + D SY+GYSVA+G F+G+S   +  GIPRGA+  G V++  +T+MT +QN 
Sbjct:   252 KQTDVAPASYDDSYLGYSVAAGEFTGDSQQELVAGIPRGAQNFGYVSIINSTDMTFIQNF 311

Query:    76 TGEQLGAYFAYAVTTSXXXXXXXXXXXXXXPLYTNPTNNVGHYETGRIYVVYQGKETYKF 135
             TGEQ+ +YF Y V  S              PL+          E G++Y+  Q      F
Sbjct:   312 TGEQMASYFGYTVVVSDVNNDGMDDILVGAPLFMEREFESNPREVGQVYLYLQASALL-F 370

Query:   136 RRLHTRDGKNSKARFGLSLCNLGDINKDGFGDFAVGAPYDGPNERGVVYIYHGSPIGARE 195
             +      G  +  RFG S+ +LGD+N+DG+ D A+G P+ G ++RG V IY+G+P G   
Sbjct:   371 QDPQVLTGTETFGRFGSSVAHLGDLNQDGYNDIAIGVPFAGKDQRGKVLIYNGNPRGLHS 430

Query:   196 NPSQIITAEEVNFGLQGSLTTFGFSLAGGVDLDENQYPDLVIGAYESNTAFVLRS 250
              PSQ++      +G Q   + FGFSL G  D+D+N YPDL++GA+      V R+
Sbjct:   431 KPSQVLQGI---WGSQTIPSGFGFSLRGDADIDKNDYPDLLVGAFGKGKVAVYRA 482

GO:0001656 "metanephros development" evidence=IGI;IMP

GO:0007155 "cell adhesion" evidence=IEA

GO:0007229 "integrin-mediated signaling pathway" evidence=IEA

GO:0007275 "multicellular organismal development" evidence=IEA

GO:0007399 "nervous system development" evidence=IEA

GO:0007613 "memory" evidence=IMP

GO:0008305 "integrin complex" evidence=IEA

GO:0014069 "postsynaptic density" evidence=ISO

GO:0016020 "membrane" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

GO:0030030 "cell projection organization" evidence=IMP

GO:0030154 "cell differentiation" evidence=IEA

GO:0030198 "extracellular matrix organization" evidence=IMP

GO:0030511 "positive regulation of transforming growth factor beta receptor signaling pathway" evidence=IGI;IMP

GO:0032591 "dendritic spine membrane" evidence=ISO

GO:0042472 "inner ear morphogenesis" evidence=IMP

GO:0043204 "perikaryon" evidence=ISO

GO:0045177 "apical part of cell" evidence=IDA

GO:0045184 "establishment of protein localization" evidence=IMP

GO:0046872 "metal ion binding" evidence=IEA

GO:0048745 "smooth muscle tissue development" evidence=IMP

GO:2000721 "positive regulation of transcription from RNA polymerase II promoter involved in smooth muscle cell differentiation" evidence=IDA

UNIPROTKB|P26009 ITGA8 "Integrin alpha-8" [Gallus gallus (taxid:9031)]

 Score = 415 (151.1 bits), Expect = 1.1e-37, P = 1.1e-37
 Identities = 89/235 (37%), Positives = 134/235 (57%)

Query:    19 KATKEGPPTDDGSYMGYSVASGFFSGESG--VAVGIPRGARLLGKVALY-TTNMTNLQNI 75
             K T   PPT D +YMGYSVA+G F+G+S   +  G+PRGA+  G V++  ++++T +QN 
Sbjct:   235 KQTGVAPPTYDDNYMGYSVAAGEFTGDSEEELVAGVPRGAQNFGYVSIINSSDLTFIQNF 294

Query:    76 TGEQLGAYFAYAVTTSXXXXXXXXXXXXXXPLYTNPTNNVGHYETGRIYVVYQGKETYKF 135
             TGEQ+ +YF Y V  S              PL+          E G++Y+  Q +  + F
Sbjct:   295 TGEQMASYFGYTVAVSDVNNDGLDDILVGAPLFMEREFESKPKEVGQVYLYLQ-ESAFLF 353

Query:   136 RRLHTRDGKNSKARFGLSLCNLGDINKDGFGDFAVGAPYDGPNERGVVYIYHGSPIGARE 195
             R      G     RFG ++ +LGD+N+DG+ D AVGAP+ G + RG V IY+G   G + 
Sbjct:   354 RDPQILTGTEVFGRFGSAITHLGDLNQDGYNDIAVGAPFAGEDRRGKVLIYNGYSNGLKT 413

Query:   196 NPSQIITAEEVNFGLQGSLTTFGFSLAGGVDLDENQYPDLVIGAYESNTAFVLRS 250
             +PSQ++      +  Q   + FGF+L G  D+D+N YPDL++GA+ +  A V R+
Sbjct:   414 DPSQVLNGA---WASQSMPSGFGFTLRGDSDVDKNDYPDLIVGAFGAGKAVVYRA 465

GO:0008305 "integrin complex" evidence=IEA

GO:0007155 "cell adhesion" evidence=IEA

GO:0007229 "integrin-mediated signaling pathway" evidence=IEA

GO:0007399 "nervous system development" evidence=IEA

GO:0030154 "cell differentiation" evidence=IEA

GO:0046872 "metal ion binding" evidence=IEA

UNIPROTKB|F1PVR1 ITGA8 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 406 (148.0 bits), Expect = 9.3e-37, P = 9.3e-37
 Identities = 89/235 (37%), Positives = 131/235 (55%)

Query:    19 KATKEGPPTDDGSYMGYSVASGFFSGESG--VAVGIPRGARLLGKVALY-TTNMTNLQNI 75
             K T   P + D SY+GYSVA+G F+G+S   +  G+PRGA+  G V++  +T+MT +QN 
Sbjct:   185 KQTDVAPASYDDSYLGYSVAAGEFTGDSEQELVAGVPRGAQNFGYVSIINSTDMTFIQNF 244

Query:    76 TGEQLGAYFAYAVTTSXXXXXXXXXXXXXXPLYTNPTNNVGHYETGRIYVVYQGKETYKF 135
             TGEQ+ +YF Y VT S              PL+          E G++Y+  Q +    F
Sbjct:   245 TGEQMASYFGYTVTVSDVNNDGMDDVLIGAPLFMEREFESSPREVGQVYLYLQ-ENALVF 303

Query:   136 RRLHTRDGKNSKARFGLSLCNLGDINKDGFGDFAVGAPYDGPNERGVVYIYHGSPIGARE 195
             R      G     RFG ++ +LGD+N+DG+ D A+GAP+ G ++RG V IY+G+  G   
Sbjct:   304 RDPQILAGTEVFGRFGSAVAHLGDLNQDGYNDIAIGAPFAGKDQRGQVLIYNGNKDGLNR 363

Query:   196 NPSQIITAEEVNFGLQGSLTTFGFSLAGGVDLDENQYPDLVIGAYESNTAFVLRS 250
              PSQI+      +  Q   + FGF+L G  D+D N YPDL++GA+ +    V R+
Sbjct:   364 KPSQILQGM---WASQTIPSGFGFTLRGDSDIDRNDYPDLIVGAFGTGKVAVYRA 415

GO:2000721 "positive regulation of transcription from RNA polymerase II promoter involved in smooth muscle cell differentiation" evidence=IEA

GO:0048745 "smooth muscle tissue development" evidence=IEA

GO:0045184 "establishment of protein localization" evidence=IEA

GO:0045177 "apical part of cell" evidence=IEA

GO:0042472 "inner ear morphogenesis" evidence=IEA

GO:0030511 "positive regulation of transforming growth factor beta receptor signaling pathway" evidence=IEA

GO:0030198 "extracellular matrix organization" evidence=IEA

GO:0030030 "cell projection organization" evidence=IEA

GO:0007613 "memory" evidence=IEA

GO:0001656 "metanephros development" evidence=IEA

GO:0007229 "integrin-mediated signaling pathway" evidence=IEA

GO:0007155 "cell adhesion" evidence=IEA

GO:0008305 "integrin complex" evidence=IEA

UNIPROTKB|F1NGX1 ITGAV "Integrin alpha-V" [Gallus gallus (taxid:9031)]

 Score = 405 (147.6 bits), Expect = 1.3e-36, P = 1.3e-36
 Identities = 90/234 (38%), Positives = 136/234 (58%)

Query:    20 ATKEGPPTDDGSYMGYSVASGFFSGES--GVAVGIPRGARLLGKVALYT-TNMTNLQNIT 76
             AT+      D SY+GYSVA G FSG+       G+PR AR LG V++Y   NM+++ N T
Sbjct:   227 ATRPASAAFDDSYLGYSVAVGDFSGDGIEDFVSGVPRAARTLGMVSIYNGKNMSSMYNFT 286

Query:    77 GEQLGAYFAYAVTTSXXXXXXXXXXXXXXPLYTNPTNNVGHYETGRIYVVYQGKETYKFR 136
             GEQ+ AYF Y+V T+              PL+ +  ++    E G++ +  Q + +  F+
Sbjct:   287 GEQMAAYFGYSVATTDINGDDYTDLFIGAPLFMDRGSDGKLQEVGQVSICLQ-RASGGFQ 345

Query:   137 RLHTRDGKNSKARFGLSLCNLGDINKDGFGDFAVGAPYDGPNERGVVYIYHGSPIGAREN 196
              +   +G    ARFG ++  LGD+++DGF D AV APY G ++RG+VYIY+G   G    
Sbjct:   346 -IAKLNGFEIFARFGSAIAPLGDLDQDGFNDIAVAAPYGGEDKRGLVYIYNGRATGLNAV 404

Query:   197 PSQIITAEEVNFGLQGSLTTFGFSLAGGVDLDENQYPDLVIGAYESNTAFVLRS 250
             PSQI+   E  +  +    +FG+SL G  D+D+N YPDL++GA+  +TA + R+
Sbjct:   405 PSQIL---EGQWAARTMPPSFGYSLKGATDVDKNGYPDLIVGAFGVDTAVLYRA 455

GO:0008305 "integrin complex" evidence=IEA

GO:0007229 "integrin-mediated signaling pathway" evidence=IEA

GO:0001525 "angiogenesis" evidence=IEA

GO:0001846 "opsonin binding" evidence=IEA

GO:0005080 "protein kinase C binding" evidence=IEA

GO:0005245 "voltage-gated calcium channel activity" evidence=IEA

GO:0007155 "cell adhesion" evidence=IEA

GO:0009897 "external side of plasma membrane" evidence=IEA

GO:0010745 "negative regulation of macrophage derived foam cell differentiation" evidence=IEA

GO:0010888 "negative regulation of lipid storage" evidence=IEA

GO:0030335 "positive regulation of cell migration" evidence=IEA

GO:0031994 "insulin-like growth factor I binding" evidence=IEA

GO:0032369 "negative regulation of lipid transport" evidence=IEA

GO:0033690 "positive regulation of osteoblast proliferation" evidence=IEA

GO:0035867 "alphav-beta3 integrin-IGF-1-IGF1R complex" evidence=IEA

GO:0043066 "negative regulation of apoptotic process" evidence=IEA

GO:0043277 "apoptotic cell clearance" evidence=IEA

GO:0045715 "negative regulation of low-density lipoprotein particle receptor biosynthetic process" evidence=IEA

GO:0045785 "positive regulation of cell adhesion" evidence=IEA

GO:0050748 "negative regulation of lipoprotein metabolic process" evidence=IEA

GO:0070371 "ERK1 and ERK2 cascade" evidence=IEA

GO:2000425 "regulation of apoptotic cell clearance" evidence=IEA

GO:2000536 "negative regulation of entry of bacterium into host cell" evidence=IEA

UNIPROTKB|E1BNM2 ITGA8 "Uncharacterized protein" [Bos taurus (taxid:9913)]

 Score = 405 (147.6 bits), Expect = 1.4e-36, P = 1.4e-36
 Identities = 88/235 (37%), Positives = 132/235 (56%)

Query:    19 KATKEGPPTDDGSYMGYSVASGFFSGESG--VAVGIPRGARLLGKVALY-TTNMTNLQNI 75
             K T+  P + D SY+GYSVA+G F+G+S   +  G+PRGA+  G V++  +T+MT +QN 
Sbjct:   252 KQTEVAPASYDDSYLGYSVAAGEFTGDSQQELVAGVPRGAQNFGYVSIINSTDMTFIQNF 311

Query:    76 TGEQLGAYFAYAVTTSXXXXXXXXXXXXXXPLYTNPTNNVGHYETGRIYVVYQGKETYKF 135
             TGEQ+ +YF Y V  S              PL+          E G++Y+  Q +    F
Sbjct:   312 TGEQMASYFGYTVAVSDVNNDGMDDILIGAPLFMEREFESSPREVGQVYLYLQ-ESALVF 370

Query:   136 RRLHTRDGKNSKARFGLSLCNLGDINKDGFGDFAVGAPYDGPNERGVVYIYHGSPIGARE 195
             R      G     RFG ++ +LGD+N+DG+ D A+GAP+ G ++RG V IY+G+  G   
Sbjct:   371 RDPQVLAGTEVFGRFGSAVAHLGDLNQDGYNDVAIGAPFAGKDQRGKVLIYNGNKNGLNT 430

Query:   196 NPSQIITAEEVNFGLQGSLTTFGFSLAGGVDLDENQYPDLVIGAYESNTAFVLRS 250
              PSQI+      +  Q   + FGF+L G  D+D+N YPDL++GA+ +    V R+
Sbjct:   431 KPSQILQGV---WASQAVPSGFGFTLRGDSDIDKNDYPDLIVGAFGTGKVAVYRA 482

GO:2000721 "positive regulation of transcription from RNA polymerase II promoter involved in smooth muscle cell differentiation" evidence=IEA

GO:0048745 "smooth muscle tissue development" evidence=IEA

GO:0045184 "establishment of protein localization" evidence=IEA

GO:0045177 "apical part of cell" evidence=IEA

GO:0042472 "inner ear morphogenesis" evidence=IEA

GO:0030511 "positive regulation of transforming growth factor beta receptor signaling pathway" evidence=IEA

GO:0030198 "extracellular matrix organization" evidence=IEA

GO:0030030 "cell projection organization" evidence=IEA

GO:0007613 "memory" evidence=IEA

GO:0001656 "metanephros development" evidence=IEA

GO:0007229 "integrin-mediated signaling pathway" evidence=IEA

GO:0007155 "cell adhesion" evidence=IEA

GO:0008305 "integrin complex" evidence=IEA

UNIPROTKB|P53708 ITGA8 "Integrin alpha-8" [Homo sapiens (taxid:9606)]

 Score = 405 (147.6 bits), Expect = 1.4e-36, P = 1.4e-36
 Identities = 87/235 (37%), Positives = 131/235 (55%)

Query:    19 KATKEGPPTDDGSYMGYSVASGFFSGESG--VAVGIPRGARLLGKVALY-TTNMTNLQNI 75
             K T+  P + D SY+GYSVA+G F+G+S   +  GIPRGA+  G V++  +T+MT +QN 
Sbjct:   253 KQTEVAPASYDDSYLGYSVAAGEFTGDSQQELVAGIPRGAQNFGYVSIINSTDMTFIQNF 312

Query:    76 TGEQLGAYFAYAVTTSXXXXXXXXXXXXXXPLYTNPTNNVGHYETGRIYVVYQGKETYKF 135
             TGEQ+ +YF Y V  S              PL+          E G+IY+  Q   +  F
Sbjct:   313 TGEQMASYFGYTVVVSDVNSDGLDDVLVGAPLFMEREFESNPREVGQIYLYLQ-VSSLLF 371

Query:   136 RRLHTRDGKNSKARFGLSLCNLGDINKDGFGDFAVGAPYDGPNERGVVYIYHGSPIGARE 195
             R      G  +  RFG ++ +LGD+N+DG+ D A+G P+ G ++RG V IY+G+  G   
Sbjct:   372 RDPQILTGTETFGRFGSAMAHLGDLNQDGYNDIAIGVPFAGKDQRGKVLIYNGNKDGLNT 431

Query:   196 NPSQIITAEEVNFGLQGSLTTFGFSLAGGVDLDENQYPDLVIGAYESNTAFVLRS 250
              PSQ++     +  +      FGF+L G  D+D+N YPDL++GA+ +    V R+
Sbjct:   432 KPSQVLQGVWASHAVPSG---FGFTLRGDSDIDKNDYPDLIVGAFGTGKVAVYRA 483

GO:0007229 "integrin-mediated signaling pathway" evidence=IEA

GO:0007399 "nervous system development" evidence=IEA

GO:0046872 "metal ion binding" evidence=IEA

GO:0001656 "metanephros development" evidence=IEA

GO:0007613 "memory" evidence=IEA

GO:0030030 "cell projection organization" evidence=IEA

GO:0030198 "extracellular matrix organization" evidence=IEA

GO:0030511 "positive regulation of transforming growth factor beta receptor signaling pathway" evidence=IEA

GO:0042472 "inner ear morphogenesis" evidence=IEA

GO:0045177 "apical part of cell" evidence=IEA

GO:0045184 "establishment of protein localization" evidence=IEA

GO:0048745 "smooth muscle tissue development" evidence=IEA

GO:2000721 "positive regulation of transcription from RNA polymerase II promoter involved in smooth muscle cell differentiation" evidence=IEA

GO:0008305 "integrin complex" evidence=TAS

GO:0016337 "cell-cell adhesion" evidence=NAS

GO:0007160 "cell-matrix adhesion" evidence=NAS

GO:0005886 "plasma membrane" evidence=TAS

GO:0034678 "alpha8-beta1 integrin complex" evidence=TAS

ZFIN|ZDB-GENE-060616-382 itgav "integrin, alpha V" [Danio rerio (taxid:7955)]

 Score = 403 (146.9 bits), Expect = 2.2e-36, P = 2.2e-36
 Identities = 85/234 (36%), Positives = 130/234 (55%)

Query:    20 ATKEGPPTDDGSYMGYSVASGFFS--GESGVAVGIPRGARLLGKVALYT-TNMTNLQNIT 76
             +TK      D SY+GYSVA G F+  GE     G+PRG + LG V ++   NM ++ N T
Sbjct:   234 STKPAGAQYDDSYLGYSVAVGDFNEDGEDDYVTGVPRGEKALGYVNIFNGRNMESMYNFT 293

Query:    77 GEQLGAYFAYAVTTSXXXXXXXXXXXXXXPLYTNPTNNVGHYETGRIYVVYQGKETYKFR 136
             G Q+ AYF ++V                 PL+ +  ++    E G++YV Y GK  + F 
Sbjct:   294 GTQMAAYFGHSVAAVDVNNDGKMDLFVGAPLFMDRGSDGKLREVGQVYV-YLGKGGFTFN 352

Query:   137 RLHTRDGKNSKARFGLSLCNLGDINKDGFGDFAVGAPYDGPNERGVVYIYHGSPIGAREN 196
              +    G    AR+G S+C++GD+N DG+ D A+ APY GP  RG+VYI++G   G    
Sbjct:   353 SVIKLTGSEIYARYGSSVCSVGDLNMDGYNDVAIAAPYGGPFHRGLVYIHNGRSTGPNPV 412

Query:   197 PSQIITAEEVNFGLQGSLTTFGFSLAGGVDLDENQYPDLVIGAYESNTAFVLRS 250
              SQ++     +  +  S   FG+S+ GG D+D+N YPDL++GA+ ++ A + R+
Sbjct:   413 ASQVLEGTWASVSMPSS---FGYSMNGGTDVDQNGYPDLIVGAFGADKAILYRA 463

GO:0008305 "integrin complex" evidence=IEA;IDA

GO:0007155 "cell adhesion" evidence=IEA

GO:0042074 "cell migration involved in gastrulation" evidence=IMP

GO:0070121 "Kupffer's vesicle development" evidence=IMP

GO:0005515 "protein binding" evidence=IPI

GO:0001525 "angiogenesis" evidence=IGI

GO:0001935 "endothelial cell proliferation" evidence=IGI

GO:0001568 "blood vessel development" evidence=IGI;IMP

GO:0016020 "membrane" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

GO:0007229 "integrin-mediated signaling pathway" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database

ID	Length	Definition	E-value
Query	357
smart00191	57	smart00191, Int_alpha, Integrin alpha (beta-propel	2e-13
smart00191	57	smart00191, Int_alpha, Integrin alpha (beta-propel	2e-08
smart00191	57	smart00191, Int_alpha, Integrin alpha (beta-propel	3e-07
pfam08441	440	pfam08441, Integrin_alpha2, Integrin alpha	5e-05
pfam01839	30	pfam01839, FG-GAP, FG-GAP repeat	0.003
pfam01839	30	pfam01839, FG-GAP, FG-GAP repeat	0.004

>gnl|CDD|214549 smart00191, Int_alpha, Integrin alpha (beta-propellor repeats)

 Score = 63.5 bits (155), Expect = 2e-13
 Identities = 23/55 (41%), Positives = 31/55 (56%), Gaps = 1/55 (1%)

Query: 148 ARFGLSLCNLGDINKDGFGDFAVGAP-YDGPNERGVVYIYHGSPIGARENPSQII 201
           + FG S+  +GD+N DG+ D  VGAP  +   E G VY+Y GS  G    P Q +
Sbjct: 3   SYFGYSVAGVGDVNGDGYPDLLVGAPRANDAGETGAVYVYFGSSGGGNSIPLQNL 57

Integrins are cell adhesion molecules that mediate cell-extracellular matrix and cell-cell interactions. They contain both alpha and beta subunits. Alpha integrins are proposed to contain a domain containing a 7-fold repeat that adopts a beta-propellor fold. Some of these domains contain an inserted von Willebrand factor type-A domain. Some repeats contain putative calcium-binding sites. The 7-fold repeat domain is homologous to a similar domain in phosphatidylinositol-glycan-specific phospholipase D. Length = 57

>gnl|CDD|214549 smart00191, Int_alpha, Integrin alpha (beta-propellor repeats)

 Score = 49.7 bits (119), Expect = 2e-08
 Identities = 22/65 (33%), Positives = 32/65 (49%), Gaps = 12/65 (18%)

Query: 217 FGFSLAGGVDLDENQYPDLVIGAYESNTAFVLRSTAPYDGPNERGVVYIYHGSPIGAREN 276
           FG+S+AG  D++ + YPDL++GA               +   E G VY+Y GS  G    
Sbjct: 5   FGYSVAGVGDVNGDGYPDLLVGAPR------------ANDAGETGAVYVYFGSSGGGNSI 52

Query: 277 PSQII 281
           P Q +
Sbjct: 53  PLQNL 57

Integrins are cell adhesion molecules that mediate cell-extracellular matrix and cell-cell interactions. They contain both alpha and beta subunits. Alpha integrins are proposed to contain a domain containing a 7-fold repeat that adopts a beta-propellor fold. Some of these domains contain an inserted von Willebrand factor type-A domain. Some repeats contain putative calcium-binding sites. The 7-fold repeat domain is homologous to a similar domain in phosphatidylinositol-glycan-specific phospholipase D. Length = 57

>gnl|CDD|214549 smart00191, Int_alpha, Integrin alpha (beta-propellor repeats)

 Score = 46.6 bits (111), Expect = 3e-07
 Identities = 20/53 (37%), Positives = 28/53 (52%), Gaps = 7/53 (13%)

Query: 81  GAYFAYAVT-TSDVDGDGADDLIIGAPLYTNPTNNVGHYETGRIYVVYQGKET 132
           G+YF Y+V    DV+GDG  DL++GAP   +        ETG +YV +     
Sbjct: 2   GSYFGYSVAGVGDVNGDGYPDLLVGAPRANDAG------ETGAVYVYFGSSGG 48

Integrins are cell adhesion molecules that mediate cell-extracellular matrix and cell-cell interactions. They contain both alpha and beta subunits. Alpha integrins are proposed to contain a domain containing a 7-fold repeat that adopts a beta-propellor fold. Some of these domains contain an inserted von Willebrand factor type-A domain. Some repeats contain putative calcium-binding sites. The 7-fold repeat domain is homologous to a similar domain in phosphatidylinositol-glycan-specific phospholipase D. Length = 57

>gnl|CDD|219842 pfam08441, Integrin_alpha2, Integrin alpha

 Score = 44.7 bits (106), Expect = 5e-05
 Identities = 18/61 (29%), Positives = 29/61 (47%)

Query: 292 ELNVQILLDSKKPKSPRMFFLSDEGKNVINQTLLLIKGTQFCKSTVDMVCEAERPLCTPI 351
            LN  + LD+KK +  R  FL  E  ++    +LL  G + C++    + +  R   TPI
Sbjct: 55  TLNYTLTLDTKKRQISRALFLDSETSSLTRTLVLLSGGQEVCRTLTAYLRDEVRDKLTPI 114

Query: 352 T 352
            
Sbjct: 115 A 115

This domain is found in integrin alpha and integrin alpha precursors to the C terminus of a number of pfam01839 repeats and to the N-terminus of the pfam00357 cytoplasmic region. This region is composed of three immunoglobulin-like domains. Length = 440

>gnl|CDD|216733 pfam01839, FG-GAP, FG-GAP repeat

 Score = 34.7 bits (81), Expect = 0.003
 Identities = 11/23 (47%), Positives = 16/23 (69%)

Query: 84  FAYAVTTSDVDGDGADDLIIGAP 106
           F  +V   D++GDG  DL++GAP
Sbjct: 1   FGSSVALGDLNGDGRPDLVVGAP 23

This family contains the extracellular repeat that is found in up to seven copies in alpha integrins. This repeat has been predicted to fold into a beta propeller structure. The repeat is called the FG-GAP repeat after two conserved motifs in the repeat. The FG-GAP repeats are found in the N terminus of integrin alpha chains, a region that has been shown to be important for ligand binding. A putative Ca2+ binding motif is found in some of the repeats. Length = 30

>gnl|CDD|216733 pfam01839, FG-GAP, FG-GAP repeat

 Score = 34.0 bits (79), Expect = 0.004
 Identities = 18/37 (48%), Positives = 21/37 (56%), Gaps = 7/37 (18%)

Query: 150 FGLSLCNLGDINKDGFGDFAVGAPYDGPNERGVVYIY 186
           FG S+  LGD+N DG  D  VGAP       G VY+Y
Sbjct: 1   FGSSVA-LGDLNGDGRPDLVVGAP------GGAVYVY 30

This family contains the extracellular repeat that is found in up to seven copies in alpha integrins. This repeat has been predicted to fold into a beta propeller structure. The repeat is called the FG-GAP repeat after two conserved motifs in the repeat. The FG-GAP repeats are found in the N terminus of integrin alpha chains, a region that has been shown to be important for ligand binding. A putative Ca2+ binding motif is found in some of the repeats. Length = 30

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	357
KOG3637|consensus	1030		100.0
KOG3637|consensus	1030		100.0
smart00191	58	Int_alpha Integrin alpha (beta-propellor repeats).	98.92
PF08441	457	Integrin_alpha2: Integrin alpha; InterPro: IPR0136	98.85
smart00191	58	Int_alpha Integrin alpha (beta-propellor repeats).	98.74
PF01839	34	FG-GAP: FG-GAP repeat; InterPro: IPR013517 This re	98.62
PF13517	61	VCBS: Repeat domain in Vibrio, Colwellia, Bradyrhi	98.49
PF01839	34	FG-GAP: FG-GAP repeat; InterPro: IPR013517 This re	98.46
PF13517	61	VCBS: Repeat domain in Vibrio, Colwellia, Bradyrhi	98.28
PF14783	111	BBS2_Mid: Ciliary BBSome complex subunit 2, middle	97.69
PF14312	49	FG-GAP_2: FG-GAP repeat	96.76
PF14312	49	FG-GAP_2: FG-GAP repeat	96.62
PF14783	111	BBS2_Mid: Ciliary BBSome complex subunit 2, middle	95.94
KOG4550|consensus	606		94.97
KOG4550|consensus	606		93.71

>KOG3637|consensus

Probab=100.00  E-value=1.6e-64  Score=540.52  Aligned_cols=329  Identities=38%  Similarity=0.635  Sum_probs=273.7

Q ss_pred             CcceEEEEecC---CCCceEEeecCCCCCCCCcceeeEEEEeec--CCCeEEEeecCCCCeeeEEEEEEcC---Cceeee
Q psy1434           3 HSGQVISQNLY---DRPEFKATKEGPPTDDGSYMGYSVASGFFS--GESGVAVGIPRGARLLGKVALYTTN---MTNLQN   74 (357)
Q Consensus         3 ~~g~~~~~~~~---~~~~~~~~~~~~~~~~~sy~G~sva~gd~~--g~~~~vvGaP~~~~~~G~V~i~~~~---~~~~~~   74 (357)
                      ..|++++|+..   ....+.+.......++++||||||++|+|.  +..++|+||||+....|+|++|+..   ....+.
T Consensus       234 W~G~v~~~~~~~~~~~~~~~~~~~~~~~~~~sYLGYsV~~g~f~~~~~~~~VaGAPr~~~~~G~v~if~~~~~~~~~~~~  313 (1030)
T KOG3637|consen  234 WKGGVFLYQSNLTLRHVTFINLLPENADRDDSYLGYSVAVGVFSGPGTISFVAGAPRYNHTGGKVYIFQLSGKSLRPLQV  313 (1030)
T ss_pred             ccCeEEEeccccccccccccccCccccccccceeeEEEEeeeccCCCceEEEecCccccCcccEEEEEeccccccceeee
Confidence            46899999842   223444444444555799999999999999  5688999999974444999999975   456688


Q ss_pred             ccCCccccccceEEEEEEeCCCCCceEEEeccCcCCCCCCCCCccccEEEEEEeCCCccceEEeeeecCCC-cCCCccee
Q psy1434          75 ITGEQLGAYFAYAVTTSDVDGDGADDLIIGAPLYTNPTNNVGHYETGRIYVVYQGKETYKFRRLHTRDGKN-SKARFGLS  153 (357)
Q Consensus        75 ~~g~~~~s~fG~sva~~D~ngDG~~DlvvGaP~~~~~~~~~~~~~~G~Vyv~~~~~~~~~~~~~~~~~g~~-~~~~fG~s  153 (357)
                      +.|+|++|||||+||+.|+|+||++||+||||+|+.+    ...+.|+||||.+.+. +.|....++.+.. ..+|||++
T Consensus       314 ~~GeQ~GSYFG~sl~~vDlNgDG~tDLLVGAP~y~~~----~~~e~GrVYVy~~~~~-~~~~~~~~L~~~~~~~~RFG~A  388 (1030)
T KOG3637|consen  314 LRGEQIGSYFGYSLAAVDLNGDGLTDLLVGAPLYFER----DRYEVGRVYVYLNGGL-GLFPEQITLRGPGGPSGRFGSA  388 (1030)
T ss_pred             eeeeeehhhcCeeEEEEEcCCCCCcceEEecCccccC----CCCcceEEEEEEecCC-CCcccceeEecCCCcccchhhh
Confidence            9999999999999999999999999999999999975    2357899999999886 4566666555543 47799999


Q ss_pred             EEeeccCCCCCCceeEEcCCCCCCCCccEEEEEeCCCCCCCCCCceEEecceeccccCCCccccceeeeccccCCCCCCC
Q psy1434         154 LCNLGDINKDGFGDFAVGAPYDGPNERGVVYIYHGSPIGARENPSQIITAEEVNFGLQGSLTTFGFSLAGGVDLDENQYP  233 (357)
Q Consensus       154 va~~gDiN~DG~~Dl~VgaP~~~~~~~G~Vyiy~g~~~g~~~~~~q~i~~~~~~~g~~~~~~~FG~si~~~~D~d~DG~~  233 (357)
                      |+.+||||+|||+|||||||+++ .+.|+||||+|+.+|+..+|+|+|.+..+..    ..++||+||+++.|||+||||
T Consensus       389 la~LGDlN~DG~nDVAVGAP~eg-~~~GaVYIy~Gs~~Gl~~~PSQ~I~g~~~~~----~l~~FG~SLsG~~DlDgNgyp  463 (1030)
T KOG3637|consen  389 LAALGDLNQDGYNDVAVGAPFEG-DNQGAVYIYHGSKGGLRSKPSQRIEGSSLGP----GLQYFGQSLSGGSDLDGNGYP  463 (1030)
T ss_pred             hhcccCcccCCCCceEEeCCcCC-CCCceEEEEcCCCCCCCCCCceEEeccccCC----cccccccccccCccCCCCCCc
Confidence            99999999999999999999997 4559999999999999999999999988763    378999999999999999999


Q ss_pred             cEEEeecCCCcEEEEccCCCCCCCCCCCeEEEEEcccccccCCCceeeecccccccce----------------------
Q psy1434         234 DLVIGAYESNTAFVLRSTAPYDGPNERGVVYIYHGSPIGARENPSQIITAEEVNFGLQ----------------------  291 (357)
Q Consensus       234 Dl~VGa~~~~~v~~~rsrpv~~~~~~~G~v~~~~~~~~~~~~~~~q~i~~~~~~c~~~----------------------  291 (357)
                      ||+|||+++++|++||+|||          +.+++++.+.+    +.|++++++|...                      
T Consensus       464 DlaVGA~~s~~vvllrsRPV----------v~v~~~~~~~p----~~I~~~~~~C~~~~~~~c~~v~~Cf~~~~~~~~~~  529 (1030)
T KOG3637|consen  464 DLAVGAFGSGQVVLLRARPV----------VTVSASLLFEP----RKINVEQKNCCVRGSKTCVNVTLCFSYSGKSVPPR  529 (1030)
T ss_pred             cEEeccCCCCcEEEEEcccE----------EEEEeeEEcCc----ccCCccccccccCCCccEEEEEEEEEEeeecCCCc
Confidence            99999999999999999999          99999888766    4699999987542                      


Q ss_pred             --eEEEEEEEccCC---CCCCceEEecCCCceEEEEEEEEeCCCCCeEEEEEEeecCCcceecceeeeee
Q psy1434         292 --ELNVQILLDSKK---PKSPRMFFLSDEGKNVINQTLLLIKGTQFCKSTVDMVCEAERPLCTPITPAVS  356 (357)
Q Consensus       292 --~~~~~~~ld~~~---~~~~r~~f~~~~~~~~~~~~~~l~~~~~~C~~~~~~~~~~~~D~l~pi~~~~~  356 (357)
                        .++++++||..+   ...+|++|... +.+..+....+..+++.|.++.+|+++++|||||||.++|+
T Consensus       530 ~~~l~~~l~ld~~~~~~~~~~R~~F~~~-~~~~~~~~~~~~~~~~~C~~~~~~~~~~~~D~ltPI~~~~~  598 (1030)
T KOG3637|consen  530 TLDLRYELTLDVDKDKARQSPRALFLGS-GSRLGSLTAVLSQGQKSCRRLLLYLRDNVRDKLTPIVLSLN  598 (1030)
T ss_pred             eEEEEEEEEeccccccccCcCcEEEccC-CCcceeeeeeecccccchhheeEecccccccceeeeEEEEE
Confidence              566777788633   23589999753 33344555555567888999999999999999999999986

>KOG3637|consensus

Probab=100.00  E-value=6.1e-35  Score=313.23  Aligned_cols=231  Identities=33%  Similarity=0.557  Sum_probs=183.9

Q ss_pred             CCCcceeeEE--EEeecCCCeEEEeecCCCCeeeEEEEEEcC--C---ceee--eccCCccccccceEEEEEEeCCCCCc
Q psy1434          29 DGSYMGYSVA--SGFFSGESGVAVGIPRGARLLGKVALYTTN--M---TNLQ--NITGEQLGAYFAYAVTTSDVDGDGAD   99 (357)
Q Consensus        29 ~~sy~G~sva--~gd~~g~~~~vvGaP~~~~~~G~V~i~~~~--~---~~~~--~~~g~~~~s~fG~sva~~D~ngDG~~   99 (357)
                      .+..+|++-+  ++.+.+.+.+++|||+.+.|.|.+++++..  .   +...  ...-.+..+|+||+|+++++.+++..
T Consensus       203 ~~~~~gm~Q~GfSa~~t~~~~v~lGApG~~~W~G~v~~~~~~~~~~~~~~~~~~~~~~~~~~sYLGYsV~~g~f~~~~~~  282 (1030)
T KOG3637|consen  203 GEEIFGMCQAGFSAAFTDEDGLVLGAPGAYYWKGGVFLYQSNLTLRHVTFINLLPENADRDDSYLGYSVAVGVFSGPGTI  282 (1030)
T ss_pred             hhhheeecccccceeecCCCcEEEeCCccccccCeEEEeccccccccccccccCccccccccceeeEEEEeeeccCCCce
Confidence            3445555543  455555668999999999999999999842  1   1111  11112357999999999999999999


Q ss_pred             eEEEeccCcCCCCCCCCCccccEEEEEEeCCCccceEEeeeecCCCcCCCcceeEEeeccCCCCCCceeEEcCCCCC---
Q psy1434         100 DLIIGAPLYTNPTNNVGHYETGRIYVVYQGKETYKFRRLHTRDGKNSKARFGLSLCNLGDINKDGFGDFAVGAPYDG---  176 (357)
Q Consensus       100 DlvvGaP~~~~~~~~~~~~~~G~Vyv~~~~~~~~~~~~~~~~~g~~~~~~fG~sva~~gDiN~DG~~Dl~VgaP~~~---  176 (357)
                      ++|.|||++.+        ..|+||+|....+  .+...+.+.|++.++|||++||++ |+|+||++||+||||++-   
T Consensus       283 ~~VaGAPr~~~--------~~G~v~if~~~~~--~~~~~~~~~GeQ~GSYFG~sl~~v-DlNgDG~tDLLVGAP~y~~~~  351 (1030)
T KOG3637|consen  283 SFVAGAPRYNH--------TGGKVYIFQLSGK--SLRPLQVLRGEQIGSYFGYSLAAV-DLNGDGLTDLLVGAPLYFERD  351 (1030)
T ss_pred             EEEecCccccC--------cccEEEEEecccc--ccceeeeeeeeeehhhcCeeEEEE-EcCCCCCcceEEecCccccCC
Confidence            99999999975        3599999998775  678888899999999999999987 999999999999999754   


Q ss_pred             CCCccEEEEEeCCCCCCCCCCceEEecceeccccCCCccccceeeeccccCCCCCCCcEEEeecCCCcEEEEccCCCCCC
Q psy1434         177 PNERGVVYIYHGSPIGARENPSQIITAEEVNFGLQGSLTTFGFSLAGGVDLDENQYPDLVIGAYESNTAFVLRSTAPYDG  256 (357)
Q Consensus       177 ~~~~G~Vyiy~g~~~g~~~~~~q~i~~~~~~~g~~~~~~~FG~si~~~~D~d~DG~~Dl~VGa~~~~~v~~~rsrpv~~~  256 (357)
                      ..+.|+||||.+.+.+.+... ..+....      +...+||.||+..+|||+|||+|+|||||.             ++
T Consensus       352 ~~e~GrVYVy~~~~~~~~~~~-~~L~~~~------~~~~RFG~Ala~LGDlN~DG~nDVAVGAP~-------------eg  411 (1030)
T KOG3637|consen  352 RYEVGRVYVYLNGGLGLFPEQ-ITLRGPG------GPSGRFGSALAALGDLNQDGYNDVAVGAPF-------------EG  411 (1030)
T ss_pred             CCcceEEEEEEecCCCCcccc-eeEecCC------CcccchhhhhhcccCcccCCCCceEEeCCc-------------CC
Confidence            258899999999987655432 2233221      135699999999999999999999999984             33


Q ss_pred             CCCCCeEEEEEcccccccCCCceeeecccccccce
Q psy1434         257 PNERGVVYIYHGSPIGARENPSQIITAEEVNFGLQ  291 (357)
Q Consensus       257 ~~~~G~v~~~~~~~~~~~~~~~q~i~~~~~~c~~~  291 (357)
                       +++|+||||+|+..++.++|+|+|...+..+.++
T Consensus       412 -~~~GaVYIy~Gs~~Gl~~~PSQ~I~g~~~~~~l~  445 (1030)
T KOG3637|consen  412 -DNQGAVYIYHGSKGGLRSKPSQRIEGSSLGPGLQ  445 (1030)
T ss_pred             -CCCceEEEEcCCCCCCCCCCceEEeccccCCccc
Confidence             3449999999999999999999999999888755

>smart00191 Int_alpha Integrin alpha (beta-propellor repeats)

Probab=98.92  E-value=1.6e-09  Score=77.87  Aligned_cols=47  Identities=45%  Similarity=0.830  Sum_probs=40.0

Q ss_pred             CCCcceeEEeeccCCCCCCceeEEcCCCCCCC-CccEEEEEeCCCCCC
Q psy1434         147 KARFGLSLCNLGDINKDGFGDFAVGAPYDGPN-ERGVVYIYHGSPIGA  193 (357)
Q Consensus       147 ~~~fG~sva~~gDiN~DG~~Dl~VgaP~~~~~-~~G~Vyiy~g~~~g~  193 (357)
                      .++||++|+.++|+|+||+.||+||||.++.. +.|+||+|.+++.+.
T Consensus         2 ~~~fG~sv~~~~d~ngDg~~dl~vGAP~~~~~~~~G~vy~~~~~~~~~   49 (58)
T smart00191        2 GSYFGYSVAGVGDVNGDGYPDLLVGAPRANDAGETGAVYVYFGSSGGG   49 (58)
T ss_pred             CcccchhheeccccCCCCccCEEEeCcccCCCCCCCEEEEEEecCCCC
Confidence            57899999988999999999999999987522 379999999987543

Integrins are cell adhesion molecules that mediate cell-extracellular matrix and cell-cell interactions. They contain both alpha and beta subunits. Alpha integrins are proposed to contain a domain containing a 7-fold repeat that adopts a beta-propellor fold. Some of these domains contain an inserted von Willebrand factor type-A domain. Some repeats contain putative calcium-binding sites. The 7-fold repeat domain is homologous to a similar domain in phosphatidylinositol-glycan-specific phospholipase D.

>PF08441 Integrin_alpha2: Integrin alpha; InterPro: IPR013649 This domain is found in integrin alpha and integrin alpha precursors to the C terminus of a number of IPR013517 from INTERPRO repeats and to the N terminus of the IPR013513 from INTERPRO cytoplasmic region

Probab=98.85  E-value=1.2e-08  Score=103.07  Aligned_cols=93  Identities=30%  Similarity=0.419  Sum_probs=63.0

Q ss_pred             cCCCCCCCCCCCeEEEEEcccccccCCCceeeecccccccce----------------------------eEEEEEEEcc
Q psy1434         250 STAPYDGPNERGVVYIYHGSPIGARENPSQIITAEEVNFGLQ----------------------------ELNVQILLDS  301 (357)
Q Consensus       250 srpv~~~~~~~G~v~~~~~~~~~~~~~~~q~i~~~~~~c~~~----------------------------~~~~~~~ld~  301 (357)
                      ||||          +.+..+..+.+.    .|++++.+|...                            +|+|++.||.
T Consensus         1 sRPV----------v~v~~~i~~~p~----~I~~~~~~C~~~~~~~~~c~~v~~Cf~~~~~~~~~~~~~~~l~y~l~lD~   66 (457)
T PF08441_consen    1 SRPV----------VSVEASITFSPD----KIDLENKNCTLNDGKSVTCFNVTVCFSYTGKSVFSDPSSIDLNYTLELDS   66 (457)
T ss_dssp             B-SE----------EEEEEEEEESSS----SE-TTTSSCESSSSSEEEEEEEEEEEEEE-TSSSTTTSEEEEEEEEEEST
T ss_pred             CCCE----------EEEEEEEEECCc----ccCCCccCCCCCCCcceEEEEEEEEEEEEccccccCCcceeEEEEEEEec
Confidence            6888          888888888775    499999888642                            5677777775


Q ss_pred             -CCCCCCceEEecCCCceEEEEEEEEeCCCCCeEEEEEEeecCCcceecceeeeee
Q psy1434         302 -KKPKSPRMFFLSDEGKNVINQTLLLIKGTQFCKSTVDMVCEAERPLCTPITPAVS  356 (357)
Q Consensus       302 -~~~~~~r~~f~~~~~~~~~~~~~~l~~~~~~C~~~~~~~~~~~~D~l~pi~~~~~  356 (357)
                       .....+|++|...+..+.....+.+..+...|.++.+||+++++|+|+||.|+|+
T Consensus        67 ~~~~~~~R~~F~~~~~~~~~~~~~~~~~~~~~C~~~~v~l~~~~~D~lsPI~v~l~  122 (457)
T PF08441_consen   67 DKKRQNPRAFFLDNESSSITKTLILLSQGQEQCRTITVYLKEEIRDKLSPIKVSLS  122 (457)
T ss_dssp             TTTTSC-SEEETTTTSSEEEEEEEEECSSS-EEEEEEEEE-SG-S-SSS-EEEEEE
T ss_pred             ccCCccccEEEccCCCccEEEEEEEecCCCCeEEEEEEEeccCCccccCCcEEEEE
Confidence             2335789999533344444444555567778999999999999999999999986

; PDB: 1M1X_A 1U8C_A 1L5G_A 3IJE_A 1JV2_A 2VDN_A 2VC2_A 3NIF_A 3NIG_C 2VDM_A ....

>smart00191 Int_alpha Integrin alpha (beta-propellor repeats)

Probab=98.74  E-value=1.3e-08  Score=73.10  Aligned_cols=45  Identities=44%  Similarity=0.884  Sum_probs=38.7

Q ss_pred             ccccceEEE-EEEeCCCCCceEEEeccCcCCCCCCCCCccccEEEEEEeCCC
Q psy1434          81 GAYFAYAVT-TSDVDGDGADDLIIGAPLYTNPTNNVGHYETGRIYVVYQGKE  131 (357)
Q Consensus        81 ~s~fG~sva-~~D~ngDG~~DlvvGaP~~~~~~~~~~~~~~G~Vyv~~~~~~  131 (357)
                      +++||++|+ .+|+|+||..||+||||++....      +.|+||+|.....
T Consensus         2 ~~~fG~sv~~~~d~ngDg~~dl~vGAP~~~~~~------~~G~vy~~~~~~~   47 (58)
T smart00191        2 GSYFGYSVAGVGDVNGDGYPDLLVGAPRANDAG------ETGAVYVYFGSSG   47 (58)
T ss_pred             CcccchhheeccccCCCCccCEEEeCcccCCCC------CCCEEEEEEecCC
Confidence            689999999 89999999999999999986421      4799999998753

Integrins are cell adhesion molecules that mediate cell-extracellular matrix and cell-cell interactions. They contain both alpha and beta subunits. Alpha integrins are proposed to contain a domain containing a 7-fold repeat that adopts a beta-propellor fold. Some of these domains contain an inserted von Willebrand factor type-A domain. Some repeats contain putative calcium-binding sites. The 7-fold repeat domain is homologous to a similar domain in phosphatidylinositol-glycan-specific phospholipase D.

>PF01839 FG-GAP: FG-GAP repeat; InterPro: IPR013517 This region contains the extracellular repeat that is found in up to seven copies in alpha integrins

Probab=98.62  E-value=5.8e-08  Score=61.84  Aligned_cols=34  Identities=47%  Similarity=0.947  Sum_probs=25.8

Q ss_pred             cceeEEeeccCCCCCCceeEEcCCCCCCCCccEEEEE
Q psy1434         150 FGLSLCNLGDINKDGFGDFAVGAPYDGPNERGVVYIY  186 (357)
Q Consensus       150 fG~sva~~gDiN~DG~~Dl~VgaP~~~~~~~G~Vyiy  186 (357)
                      ||.+++ ++|+|+||++||+||.  ......|+||||
T Consensus         1 fG~~~~-~gD~ngDG~~Dl~vg~--~~~~~~G~v~v~   34 (34)
T PF01839_consen    1 FGSSVA-VGDFNGDGYDDLAVGY--NNGGNAGAVYVY   34 (34)
T ss_dssp             TTSCEE-EESTSSSSS-EEEEET--TTTCTCBEEEEE
T ss_pred             CCcccE-EEEcCCCCCccEEEEc--CCCCcCCEEEEC
Confidence            788888 4699999999999983  212344999997

This repeat has been predicted to fold into a beta propeller structure []. The repeat is called the FG-GAP repeat after two conserved motifs in the repeat []. The FG-GAP repeats are found in the N terminus of integrin alpha chains, a region that has been shown to be important for ligand binding []. A putative Ca2+ binding motif is found in some of the repeats. ; PDB: 1L5G_A 3IJE_A 1M1X_A 1JV2_A 1U8C_A 3V4P_C 3V4V_C 3VI3_A 3VI4_C 2VDN_A ....

>PF13517 VCBS: Repeat domain in Vibrio, Colwellia, Bradyrhizobium and Shewanella; PDB: 2C25_A 2BWR_B 2C4D_A 2BWM_A

Probab=98.49  E-value=3.4e-07  Score=66.13  Aligned_cols=61  Identities=30%  Similarity=0.491  Sum_probs=34.4

Q ss_pred             EeCCCCCceEEEeccCcCCCCCCCCCccccEEEEEEeCCCccceEEeeeecCCCcCCCcceeEEeeccCCCCCCceeEE
Q psy1434          92 DVDGDGADDLIIGAPLYTNPTNNVGHYETGRIYVVYQGKETYKFRRLHTRDGKNSKARFGLSLCNLGDINKDGFGDFAV  170 (357)
Q Consensus        92 D~ngDG~~DlvvGaP~~~~~~~~~~~~~~G~Vyv~~~~~~~~~~~~~~~~~g~~~~~~fG~sva~~gDiN~DG~~Dl~V  170 (357)
                      |+|+||+.||++..              .+++++|++.+. +.|.............  ...++ ++|+|+||..||+|
T Consensus         1 D~ngDG~~Div~~~--------------~~~~~~~~~~~~-g~~~~~~~~~~~~~~~--~~~~~-~~D~d~DG~~Di~V   61 (61)
T PF13517_consen    1 DFNGDGRPDIVVAN--------------DGSVYVYLNDGD-GTFQFPAQIPFSSSGS--GWSVA-FADIDGDGKPDILV   61 (61)
T ss_dssp             -SSSSSS-EEEEE---------------SSSEEEEEB-SS-S-BEEEEEEBTTCSGG--TTTTC-EE-SSSSSS-EEE-
T ss_pred             CCCCCCCccEEEEe--------------CCCeEEEEECCC-CCeEEeeeEeeCCCCC--cceeE-EEEccCCCcccEEC
Confidence            79999999999985              134777887765 4565544332222222  22333 57999999999986

>PF01839 FG-GAP: FG-GAP repeat; InterPro: IPR013517 This region contains the extracellular repeat that is found in up to seven copies in alpha integrins

Probab=98.46  E-value=1.8e-07  Score=59.56  Aligned_cols=34  Identities=44%  Similarity=0.815  Sum_probs=26.5

Q ss_pred             cceEEEEEEeCCCCCceEEEeccCcCCCCCCCCCccccEEEEE
Q psy1434          84 FAYAVTTSDVDGDGADDLIIGAPLYTNPTNNVGHYETGRIYVV  126 (357)
Q Consensus        84 fG~sva~~D~ngDG~~DlvvGaP~~~~~~~~~~~~~~G~Vyv~  126 (357)
                      ||++++++|+|+||++||+|| +  ..     +. ..|+||||
T Consensus         1 fG~~~~~gD~ngDG~~Dl~vg-~--~~-----~~-~~G~v~v~   34 (34)
T PF01839_consen    1 FGSSVAVGDFNGDGYDDLAVG-Y--NN-----GG-NAGAVYVY   34 (34)
T ss_dssp             TTSCEEEESTSSSSS-EEEEE-T--TT-----TC-TCBEEEEE
T ss_pred             CCcccEEEEcCCCCCccEEEE-c--CC-----CC-cCCEEEEC
Confidence            899999999999999999999 2  11     11 24999997

This repeat has been predicted to fold into a beta propeller structure []. The repeat is called the FG-GAP repeat after two conserved motifs in the repeat []. The FG-GAP repeats are found in the N terminus of integrin alpha chains, a region that has been shown to be important for ligand binding []. A putative Ca2+ binding motif is found in some of the repeats. ; PDB: 1L5G_A 3IJE_A 1M1X_A 1JV2_A 1U8C_A 3V4P_C 3V4V_C 3VI3_A 3VI4_C 2VDN_A ....

>PF13517 VCBS: Repeat domain in Vibrio, Colwellia, Bradyrhizobium and Shewanella; PDB: 2C25_A 2BWR_B 2C4D_A 2BWM_A

Probab=98.28  E-value=4.8e-07  Score=65.34  Aligned_cols=61  Identities=33%  Similarity=0.508  Sum_probs=32.5

Q ss_pred             cCCCCCCceeEEcCCCCCCCCccEEEEEeCCCCCCCCCCceEEecceeccccCCCccccceeeeccccCCCCCCCcEEE
Q psy1434         159 DINKDGFGDFAVGAPYDGPNERGVVYIYHGSPIGARENPSQIITAEEVNFGLQGSLTTFGFSLAGGVDLDENQYPDLVI  237 (357)
Q Consensus       159 DiN~DG~~Dl~VgaP~~~~~~~G~Vyiy~g~~~g~~~~~~q~i~~~~~~~g~~~~~~~FG~si~~~~D~d~DG~~Dl~V  237 (357)
                      |+|+||++||++..       .+.+++|.....+.+... ......         ......++. .+|+|+||++||+|
T Consensus         1 D~ngDG~~Div~~~-------~~~~~~~~~~~~g~~~~~-~~~~~~---------~~~~~~~~~-~~D~d~DG~~Di~V   61 (61)
T PF13517_consen    1 DFNGDGRPDIVVAN-------DGSVYVYLNDGDGTFQFP-AQIPFS---------SSGSGWSVA-FADIDGDGKPDILV   61 (61)
T ss_dssp             -SSSSSS-EEEEE--------SSSEEEEEB-SSS-BEEE-EEEBTT---------CSGGTTTTC-EE-SSSSSS-EEE-
T ss_pred             CCCCCCCccEEEEe-------CCCeEEEEECCCCCeEEe-eeEeeC---------CCCCcceeE-EEEccCCCcccEEC
Confidence            89999999999884       245788887765543211 111111         112222343 35999999999987

>PF14783 BBS2_Mid: Ciliary BBSome complex subunit 2, middle region

Probab=97.69  E-value=0.00025  Score=57.33  Aligned_cols=101  Identities=24%  Similarity=0.285  Sum_probs=59.4

Q ss_pred             eEEEEEEeCCCCCceEEEeccCcCCCCCCCCCccccEEEEEEeCCCccceEEee-----eecCCCcCCCcceeEEeeccC
Q psy1434          86 YAVTTSDVDGDGADDLIIGAPLYTNPTNNVGHYETGRIYVVYQGKETYKFRRLH-----TRDGKNSKARFGLSLCNLGDI  160 (357)
Q Consensus        86 ~sva~~D~ngDG~~DlvvGaP~~~~~~~~~~~~~~G~Vyv~~~~~~~~~~~~~~-----~~~g~~~~~~fG~sva~~gDi  160 (357)
                      .++|..|+|+||...|+||+.             --.+.||.+..-  .++...     .+... ..++|++++      
T Consensus         3 ~al~~~d~d~dg~~eLlvGs~-------------D~~IRvf~~~e~--~~Ei~e~~~v~~L~~~-~~~~F~Y~l------   60 (111)
T PF14783_consen    3 TALCLFDFDGDGENELLVGSD-------------DFEIRVFKGDEI--VAEITETDKVTSLCSL-GGGRFAYAL------   60 (111)
T ss_pred             eEEEEEecCCCCcceEEEecC-------------CcEEEEEeCCcE--EEEEecccceEEEEEc-CCCEEEEEe------
Confidence            478999999999999999983             246778876542  111111     01100 123444443      


Q ss_pred             CCCCCceeEEcCCCCCCCCccEEEEEeCCCCCCCCCCceEEecceeccccCCCccccceeeeccccCCCCCCCcEEEeec
Q psy1434         161 NKDGFGDFAVGAPYDGPNERGVVYIYHGSPIGARENPSQIITAEEVNFGLQGSLTTFGFSLAGGVDLDENQYPDLVIGAY  240 (357)
Q Consensus       161 N~DG~~Dl~VgaP~~~~~~~G~Vyiy~g~~~g~~~~~~q~i~~~~~~~g~~~~~~~FG~si~~~~D~d~DG~~Dl~VGa~  240 (357)
                                        ..|.|=+|.....-++.+..+.                 =.++.. .|+|+||+++|++|-.
T Consensus        61 ------------------~NGTVGvY~~~~RlWRiKSK~~-----------------~~~~~~-~D~~gdG~~eLI~Gws  104 (111)
T PF14783_consen   61 ------------------ANGTVGVYDRSQRLWRIKSKNQ-----------------VTSMAF-YDINGDGVPELIVGWS  104 (111)
T ss_pred             ------------------cCCEEEEEeCcceeeeeccCCC-----------------eEEEEE-EcCCCCCceEEEEEec
Confidence                              3478888877543222111111                 123333 4999999999999975


Q ss_pred             CCCcE
Q psy1434         241 ESNTA  245 (357)
Q Consensus       241 ~~~~v  245 (357)
                       +|++
T Consensus       105 -nGkv  108 (111)
T PF14783_consen  105 -NGKV  108 (111)
T ss_pred             -CCeE
Confidence             3443

>PF14312 FG-GAP_2: FG-GAP repeat

Probab=96.76  E-value=0.0026  Score=43.90  Aligned_cols=36  Identities=33%  Similarity=0.647  Sum_probs=27.6

Q ss_pred             CCcCCCcceeEEeeccCCCCCCceeEEcCCCCCC--CCccEEEEE
Q psy1434         144 KNSKARFGLSLCNLGDINKDGFGDFAVGAPYDGP--NERGVVYIY  186 (357)
Q Consensus       144 ~~~~~~fG~sva~~gDiN~DG~~Dl~VgaP~~~~--~~~G~Vyiy  186 (357)
                      .....+||.+|+.-||       -|+||||+++.  .+.|+||||
T Consensus        12 ~~~~d~FG~sVai~gd-------~~vVGA~~~~~~~~~~GaaYvf   49 (49)
T PF14312_consen   12 GAAGDYFGWSVAISGD-------TLVVGAPGDDSNGSDSGAAYVF   49 (49)
T ss_pred             CCccCcceeEEEEeCC-------EEEEeeeccCCCCCcCCEEEEC
Confidence            3467899999885443       29999998753  357999997

>PF14312 FG-GAP_2: FG-GAP repeat

Probab=96.62  E-value=0.0051  Score=42.43  Aligned_cols=39  Identities=33%  Similarity=0.658  Sum_probs=28.8

Q ss_pred             CCccccccceEEEEEEeCCCCCceEEEeccCcCCCCCCCCCccccEEEEE
Q psy1434          77 GEQLGAYFAYAVTTSDVDGDGADDLIIGAPLYTNPTNNVGHYETGRIYVV  126 (357)
Q Consensus        77 g~~~~s~fG~sva~~D~ngDG~~DlvvGaP~~~~~~~~~~~~~~G~Vyv~  126 (357)
                      ....+++||++|++   ++|   .||||||.....     ....|+||||
T Consensus        11 d~~~~d~FG~sVai---~gd---~~vVGA~~~~~~-----~~~~GaaYvf   49 (49)
T PF14312_consen   11 DGAAGDYFGWSVAI---SGD---TLVVGAPGDDSN-----GSDSGAAYVF   49 (49)
T ss_pred             CCCccCcceeEEEE---eCC---EEEEeeeccCCC-----CCcCCEEEEC
Confidence            45678899999984   444   499999987642     1257999997

>PF14783 BBS2_Mid: Ciliary BBSome complex subunit 2, middle region

Probab=95.94  E-value=0.14  Score=41.45  Aligned_cols=28  Identities=18%  Similarity=0.285  Sum_probs=20.7

Q ss_pred             eEEEEeec--CCCeEEEeecCCCCeeeEEEEEEcC
Q psy1434          36 SVASGFFS--GESGVAVGIPRGARLLGKVALYTTN   68 (357)
Q Consensus        36 sva~gd~~--g~~~~vvGaP~~~~~~G~V~i~~~~   68 (357)
                      |++..||+  |...|++|+.-.     .+.+|+..
T Consensus         4 al~~~d~d~dg~~eLlvGs~D~-----~IRvf~~~   33 (111)
T PF14783_consen    4 ALCLFDFDGDGENELLVGSDDF-----EIRVFKGD   33 (111)
T ss_pred             EEEEEecCCCCcceEEEecCCc-----EEEEEeCC
Confidence            67888998  668899997652     56777654

>KOG4550|consensus

Probab=94.97  E-value=0.17  Score=49.82  Aligned_cols=127  Identities=17%  Similarity=0.163  Sum_probs=65.9

Q ss_pred             eEEEEEEeCCCCCceEEEeccCcCCCCCCCCCccccEEEEEEeCCCccceEEee-eec-CCCcCCCcceeEEeeccCCCC
Q psy1434          86 YAVTTSDVDGDGADDLIIGAPLYTNPTNNVGHYETGRIYVVYQGKETYKFRRLH-TRD-GKNSKARFGLSLCNLGDINKD  163 (357)
Q Consensus        86 ~sva~~D~ngDG~~DlvvGaP~~~~~~~~~~~~~~G~Vyv~~~~~~~~~~~~~~-~~~-g~~~~~~fG~sva~~gDiN~D  163 (357)
                      -.+-+.|+|+|++.|+.--.|..+.           .-.++ ..+. ....+.. .+. .....-+-+.+=+.+ |+|+|
T Consensus       142 ~e~ma~Dfn~D~i~Di~G~~~ne~~-----------~~~i~-~~g~-l~llc~H~a~~t~~KlN~~ip~~hafi-DLn~D  207 (606)
T KOG4550|consen  142 DEPMAMDFNGDLIPDIFGITNNESN-----------QPQIL-LGGN-LSLLCWHPALTTTSKLNMRIPHSHAFI-DLNED  207 (606)
T ss_pred             CCcEEEEcCCCcceeeccccccccc-----------Cccee-cCCC-CChhhcccccccchhccccCCCcceeE-ecccc
Confidence            3455789999999999754443221           11122 2221 1111111 010 011223445555666 99999


Q ss_pred             CCceeEEcCCCCCCCCccEE--EEEeCCCCCCCCCCceEEecceeccccCCCccccceeeeccccCCCCCCCcEEEee
Q psy1434         164 GFGDFAVGAPYDGPNERGVV--YIYHGSPIGARENPSQIITAEEVNFGLQGSLTTFGFSLAGGVDLDENQYPDLVIGA  239 (357)
Q Consensus       164 G~~Dl~VgaP~~~~~~~G~V--yiy~g~~~g~~~~~~q~i~~~~~~~g~~~~~~~FG~si~~~~D~d~DG~~Dl~VGa  239 (357)
                      =..||+..+-.    ..|..  -||++... .+ ..+..+....     +.....-|.++.  +|+|+||..|++|--
T Consensus       208 f~ADlfl~Tk~----s~~t~~~eiW~~~~~-nf-s~~~~~~kp~-----pan~~~vGq~vf--mDfd~dG~~dilvP~  272 (606)
T KOG4550|consen  208 FTADLFLTTKA----STSTFQFEIWENLDG-NF-SVSTILEKPQ-----PANMMVVGQSVF--MDFDGDGHMDILVPG  272 (606)
T ss_pred             ceeeeEEEecc----CCCceeeehhhcCCC-ce-EEEEEccCCC-----CCCceeecceEE--EeecCCcceeeeecc
Confidence            99999876621    22322  24444432 11 1122222111     113455677764  699999999999865

>KOG4550|consensus

Probab=93.71  E-value=0.69  Score=45.77  Aligned_cols=76  Identities=17%  Similarity=0.128  Sum_probs=45.7

Q ss_pred             cccceEEEEEEeCCCCCceEEEeccCcCCCCCCCCCccccEEEEEEeCCCccceEEeeeecCCC--cCCCcceeEEeecc
Q psy1434          82 AYFAYAVTTSDVDGDGADDLIIGAPLYTNPTNNVGHYETGRIYVVYQGKETYKFRRLHTRDGKN--SKARFGLSLCNLGD  159 (357)
Q Consensus        82 s~fG~sva~~D~ngDG~~DlvvGaP~~~~~~~~~~~~~~G~Vyv~~~~~~~~~~~~~~~~~g~~--~~~~fG~sva~~gD  159 (357)
                      -|-+.+=+..|+|+|=..||+.-+- ...     +   .=..-|+.+...  .|+....+.-.+  ..-.-|.++.  -|
T Consensus       193 ~~ip~~hafiDLn~Df~ADlfl~Tk-~s~-----~---t~~~eiW~~~~~--nfs~~~~~~kp~pan~~~vGq~vf--mD  259 (606)
T KOG4550|consen  193 MRIPHSHAFIDLNEDFTADLFLTTK-AST-----S---TFQFEIWENLDG--NFSVSTILEKPQPANMMVVGQSVF--MD  259 (606)
T ss_pred             ccCCCcceeEeccccceeeeEEEec-cCC-----C---ceeeehhhcCCC--ceEEEEEccCCCCCCceeecceEE--Ee
Confidence            4567777889999999999987651 110     0   112234444433  565444333222  1223466665  39


Q ss_pred             CCCCCCceeEE
Q psy1434         160 INKDGFGDFAV  170 (357)
Q Consensus       160 iN~DG~~Dl~V  170 (357)
                      +++||..|++|
T Consensus       260 fd~dG~~dilv  270 (606)
T KOG4550|consen  260 FDGDGHMDILV  270 (606)
T ss_pred             ecCCcceeeee
Confidence            99999999988

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	357
4g1e_A	998	Crystal Structure Of Integrin Alpha V Beta 3 With C		4e-35
4g1e_A	998	Crystal Structure Of Integrin Alpha V Beta 3 With C		1e-06
4g1m_A	959	Re-Refinement Of Alpha V Beta 3 Structure Length =		4e-35
4g1m_A	959	Re-Refinement Of Alpha V Beta 3 Structure Length =		1e-06
1jv2_A	957	Crystal Structure Of The Extracellular Segment Of I		5e-35
1jv2_A	957	Crystal Structure Of The Extracellular Segment Of I		1e-06
3ije_A	967	Crystal Structure Of The Complete Integrin Alhavbet		5e-35
3ije_A	967	Crystal Structure Of The Complete Integrin Alhavbet		1e-06
3vi3_A	632	Crystal Structure Of Alpha5beta1 Integrin Headpiece		2e-32
3fcs_A	959	Structure Of Complete Ectodomain Of Integrin Aiibb3		2e-30
3fcu_A	457	Structure Of Headpiece Of Integrin Aiibb3 In Open C		2e-29
3fcu_A	457	Structure Of Headpiece Of Integrin Aiibb3 In Open C		1e-07
2vc2_A	452	Re-Refinement Of Integrin Alphaiibbeta3 Headpiece B		2e-29
2vc2_A	452	Re-Refinement Of Integrin Alphaiibbeta3 Headpiece B		1e-07
1tye_A	452	Structural Basis For Allostery In Integrins And Bin		8e-29
1tye_A	452	Structural Basis For Allostery In Integrins And Bin		5e-07
3v4p_A	597	Crystal Structure Of A4b7 Headpiece Complexed With		1e-22
3k6s_A	1095	Structure Of Integrin Alphaxbeta2 Ectodomain Length		2e-12

>pdb|4G1E|A Chain A, Crystal Structure Of Integrin Alpha V Beta 3 With Coil-Coiled Tag Length = 998

Iteration: 1
 Score =  145 bits (365), Expect = 4e-35,   Method: Compositional matrix adjust.
 Identities = 84/234 (35%), Positives = 132/234 (56%), Gaps = 8/234 (3%)
Query: 20  ATKEGPPTDDGSYMGYSVASGFFSGE--SGVAVGIPRGARLLGKVALYT-TNMTNLQNIT 76
           AT+      D SY+GYSVA G F+G+       G+PR AR LG V +Y   NM++L N T
Sbjct: 209 ATRTAQAIFDDSYLGYSVAVGDFNGDGIDDFVSGVPRAARTLGMVYIYDGKNMSSLYNFT 268
Query: 77  GEQLGAYFAYAVTTSXXXXXXXXXXXXXXPLYTNPTNNVGHYETGRIYVVYQGKETYKFR 136
           GEQ+ AYF ++V  +              PL+ +  ++    E G++ V  Q + +  F+
Sbjct: 269 GEQMAAYFGFSVAATDINGDDYADVFIGAPLFMDRGSDGKLQEVGQVSVSLQ-RASGDFQ 327
Query: 137 RLHTRDGKNSKARFGLSLCNLGDINKDGFGDFAVGAPYDGPNERGVVYIYHGSPIGAREN 196
                +G    ARFG ++  LGD+++DGF D A+ APY G +++G+VYI++G   G    
Sbjct: 328 TTKL-NGFEVFARFGSAIAPLGDLDQDGFNDIAIAAPYGGEDKKGIVYIFNGRSTGLNAV 386
Query: 197 PSQIITAEEVNFGLQGSLTTFGFSLAGGVDLDENQYPDLVIGAYESNTAFVLRS 250
           PSQI+   E  +  +    +FG+S+ G  D+D+N YPDL++GA+  + A + R+
Sbjct: 387 PSQIL---EGQWAARSMPPSFGYSMKGATDIDKNGYPDLIVGAFGVDRAILYRA 437

>pdb|4G1E|A Chain A, Crystal Structure Of Integrin Alpha V Beta 3 With Coil-Coiled Tag Length = 998

Iteration: 1
 Score = 50.8 bits (120), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 45/171 (26%), Positives = 75/171 (43%), Gaps = 34/171 (19%)
Query: 121 GRIYVVYQGKETYKFRRLHTRDGKNSKARFGLSLCNLGDINKDGFGDFAVGAPYDGPNER 180
           G +Y+ Y GK       L+   G+   A FG S+    DIN D + D  +GAP       
Sbjct: 251 GMVYI-YDGK---NMSSLYNFTGEQMAAYFGFSVAAT-DINGDDYADVFIGAP------- 298
Query: 181 GVVYIYHGSPIGARENPSQIITAEEVNFGLQGS-------LTTFGFSLAGGVDLDENQYP 233
             +++  GS    +E     ++ +  +   Q +          FG ++A   DLD++ + 
Sbjct: 299 --LFMDRGSDGKLQEVGQVSVSLQRASGDFQTTKLNGFEVFARFGSAIAPLGDLDQDGFN 356
Query: 234 DLVIGAYESNTAFVLRSTAPYDGPNERGVVYIYHGSPIGARENPSQIITAE 284
           D+ I A             PY G +++G+VYI++G   G    PSQI+  +
Sbjct: 357 DIAIAA-------------PYGGEDKKGIVYIFNGRSTGLNAVPSQILEGQ 394

>pdb|4G1M|A Chain A, Re-Refinement Of Alpha V Beta 3 Structure Length = 959

Iteration: 1
 Score =  145 bits (365), Expect = 4e-35,   Method: Compositional matrix adjust.
 Identities = 84/234 (35%), Positives = 132/234 (56%), Gaps = 8/234 (3%)
Query: 20  ATKEGPPTDDGSYMGYSVASGFFSGE--SGVAVGIPRGARLLGKVALYT-TNMTNLQNIT 76
           AT+      D SY+GYSVA G F+G+       G+PR AR LG V +Y   NM++L N T
Sbjct: 209 ATRTAQAIFDDSYLGYSVAVGDFNGDGIDDFVSGVPRAARTLGMVYIYDGKNMSSLYNFT 268
Query: 77  GEQLGAYFAYAVTTSXXXXXXXXXXXXXXPLYTNPTNNVGHYETGRIYVVYQGKETYKFR 136
           GEQ+ AYF ++V  +              PL+ +  ++    E G++ V  Q + +  F+
Sbjct: 269 GEQMAAYFGFSVAATDINGDDYADVFIGAPLFMDRGSDGKLQEVGQVSVSLQ-RASGDFQ 327
Query: 137 RLHTRDGKNSKARFGLSLCNLGDINKDGFGDFAVGAPYDGPNERGVVYIYHGSPIGAREN 196
                +G    ARFG ++  LGD+++DGF D A+ APY G +++G+VYI++G   G    
Sbjct: 328 TTKL-NGFEVFARFGSAIAPLGDLDQDGFNDIAIAAPYGGEDKKGIVYIFNGRSTGLNAV 386
Query: 197 PSQIITAEEVNFGLQGSLTTFGFSLAGGVDLDENQYPDLVIGAYESNTAFVLRS 250
           PSQI+   E  +  +    +FG+S+ G  D+D+N YPDL++GA+  + A + R+
Sbjct: 387 PSQIL---EGQWAARSMPPSFGYSMKGATDIDKNGYPDLIVGAFGVDRAILYRA 437

>pdb|4G1M|A Chain A, Re-Refinement Of Alpha V Beta 3 Structure Length = 959

Iteration: 1
 Score = 50.8 bits (120), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 45/171 (26%), Positives = 75/171 (43%), Gaps = 34/171 (19%)
Query: 121 GRIYVVYQGKETYKFRRLHTRDGKNSKARFGLSLCNLGDINKDGFGDFAVGAPYDGPNER 180
           G +Y+ Y GK       L+   G+   A FG S+    DIN D + D  +GAP       
Sbjct: 251 GMVYI-YDGK---NMSSLYNFTGEQMAAYFGFSVAAT-DINGDDYADVFIGAP------- 298
Query: 181 GVVYIYHGSPIGARENPSQIITAEEVNFGLQGS-------LTTFGFSLAGGVDLDENQYP 233
             +++  GS    +E     ++ +  +   Q +          FG ++A   DLD++ + 
Sbjct: 299 --LFMDRGSDGKLQEVGQVSVSLQRASGDFQTTKLNGFEVFARFGSAIAPLGDLDQDGFN 356
Query: 234 DLVIGAYESNTAFVLRSTAPYDGPNERGVVYIYHGSPIGARENPSQIITAE 284
           D+ I A             PY G +++G+VYI++G   G    PSQI+  +
Sbjct: 357 DIAIAA-------------PYGGEDKKGIVYIFNGRSTGLNAVPSQILEGQ 394

>pdb|1JV2|A Chain A, Crystal Structure Of The Extracellular Segment Of Integrin Alphavbeta3 Length = 957

Iteration: 1
 Score =  145 bits (365), Expect = 5e-35,   Method: Compositional matrix adjust.
 Identities = 84/234 (35%), Positives = 132/234 (56%), Gaps = 8/234 (3%)
Query: 20  ATKEGPPTDDGSYMGYSVASGFFSGE--SGVAVGIPRGARLLGKVALYT-TNMTNLQNIT 76
           AT+      D SY+GYSVA G F+G+       G+PR AR LG V +Y   NM++L N T
Sbjct: 209 ATRTAQAIFDDSYLGYSVAVGDFNGDGIDDFVSGVPRAARTLGMVYIYDGKNMSSLYNFT 268
Query: 77  GEQLGAYFAYAVTTSXXXXXXXXXXXXXXPLYTNPTNNVGHYETGRIYVVYQGKETYKFR 136
           GEQ+ AYF ++V  +              PL+ +  ++    E G++ V  Q + +  F+
Sbjct: 269 GEQMAAYFGFSVAATDINGDDYADVFIGAPLFMDRGSDGKLQEVGQVSVSLQ-RASGDFQ 327
Query: 137 RLHTRDGKNSKARFGLSLCNLGDINKDGFGDFAVGAPYDGPNERGVVYIYHGSPIGAREN 196
                +G    ARFG ++  LGD+++DGF D A+ APY G +++G+VYI++G   G    
Sbjct: 328 TTKL-NGFEVFARFGSAIAPLGDLDQDGFNDIAIAAPYGGEDKKGIVYIFNGRSTGLNAV 386
Query: 197 PSQIITAEEVNFGLQGSLTTFGFSLAGGVDLDENQYPDLVIGAYESNTAFVLRS 250
           PSQI+   E  +  +    +FG+S+ G  D+D+N YPDL++GA+  + A + R+
Sbjct: 387 PSQIL---EGQWAARSMPPSFGYSMKGATDIDKNGYPDLIVGAFGVDRAILYRA 437

>pdb|1JV2|A Chain A, Crystal Structure Of The Extracellular Segment Of Integrin Alphavbeta3 Length = 957

Iteration: 1
 Score = 50.8 bits (120), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 45/171 (26%), Positives = 75/171 (43%), Gaps = 34/171 (19%)
Query: 121 GRIYVVYQGKETYKFRRLHTRDGKNSKARFGLSLCNLGDINKDGFGDFAVGAPYDGPNER 180
           G +Y+ Y GK       L+   G+   A FG S+    DIN D + D  +GAP       
Sbjct: 251 GMVYI-YDGK---NMSSLYNFTGEQMAAYFGFSVAAT-DINGDDYADVFIGAP------- 298
Query: 181 GVVYIYHGSPIGARENPSQIITAEEVNFGLQGS-------LTTFGFSLAGGVDLDENQYP 233
             +++  GS    +E     ++ +  +   Q +          FG ++A   DLD++ + 
Sbjct: 299 --LFMDRGSDGKLQEVGQVSVSLQRASGDFQTTKLNGFEVFARFGSAIAPLGDLDQDGFN 356
Query: 234 DLVIGAYESNTAFVLRSTAPYDGPNERGVVYIYHGSPIGARENPSQIITAE 284
           D+ I A             PY G +++G+VYI++G   G    PSQI+  +
Sbjct: 357 DIAIAA-------------PYGGEDKKGIVYIFNGRSTGLNAVPSQILEGQ 394

>pdb|3IJE|A Chain A, Crystal Structure Of The Complete Integrin Alhavbeta3 Ectodomain Plus An Alpha/beta Transmembrane Fragment Length = 967

Iteration: 1
 Score =  145 bits (365), Expect = 5e-35,   Method: Compositional matrix adjust.
 Identities = 84/234 (35%), Positives = 132/234 (56%), Gaps = 8/234 (3%)
Query: 20  ATKEGPPTDDGSYMGYSVASGFFSGE--SGVAVGIPRGARLLGKVALYT-TNMTNLQNIT 76
           AT+      D SY+GYSVA G F+G+       G+PR AR LG V +Y   NM++L N T
Sbjct: 209 ATRTAQAIFDDSYLGYSVAVGDFNGDGIDDFVSGVPRAARTLGMVYIYDGKNMSSLYNFT 268
Query: 77  GEQLGAYFAYAVTTSXXXXXXXXXXXXXXPLYTNPTNNVGHYETGRIYVVYQGKETYKFR 136
           GEQ+ AYF ++V  +              PL+ +  ++    E G++ V  Q + +  F+
Sbjct: 269 GEQMAAYFGFSVAATDINGDDYADVFIGAPLFMDRGSDGKLQEVGQVSVSLQ-RASGDFQ 327
Query: 137 RLHTRDGKNSKARFGLSLCNLGDINKDGFGDFAVGAPYDGPNERGVVYIYHGSPIGAREN 196
                +G    ARFG ++  LGD+++DGF D A+ APY G +++G+VYI++G   G    
Sbjct: 328 TTKL-NGFEVFARFGSAIAPLGDLDQDGFNDIAIAAPYGGEDKKGIVYIFNGRSTGLNAV 386
Query: 197 PSQIITAEEVNFGLQGSLTTFGFSLAGGVDLDENQYPDLVIGAYESNTAFVLRS 250
           PSQI+   E  +  +    +FG+S+ G  D+D+N YPDL++GA+  + A + R+
Sbjct: 387 PSQIL---EGQWAARSMPPSFGYSMKGATDIDKNGYPDLIVGAFGVDRAILYRA 437

>pdb|3IJE|A Chain A, Crystal Structure Of The Complete Integrin Alhavbeta3 Ectodomain Plus An Alpha/beta Transmembrane Fragment Length = 967

Iteration: 1
 Score = 50.8 bits (120), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 45/171 (26%), Positives = 75/171 (43%), Gaps = 34/171 (19%)
Query: 121 GRIYVVYQGKETYKFRRLHTRDGKNSKARFGLSLCNLGDINKDGFGDFAVGAPYDGPNER 180
           G +Y+ Y GK       L+   G+   A FG S+    DIN D + D  +GAP       
Sbjct: 251 GMVYI-YDGK---NMSSLYNFTGEQMAAYFGFSVAAT-DINGDDYADVFIGAP------- 298
Query: 181 GVVYIYHGSPIGARENPSQIITAEEVNFGLQGS-------LTTFGFSLAGGVDLDENQYP 233
             +++  GS    +E     ++ +  +   Q +          FG ++A   DLD++ + 
Sbjct: 299 --LFMDRGSDGKLQEVGQVSVSLQRASGDFQTTKLNGFEVFARFGSAIAPLGDLDQDGFN 356
Query: 234 DLVIGAYESNTAFVLRSTAPYDGPNERGVVYIYHGSPIGARENPSQIITAE 284
           D+ I A             PY G +++G+VYI++G   G    PSQI+  +
Sbjct: 357 DIAIAA-------------PYGGEDKKGIVYIFNGRSTGLNAVPSQILEGQ 394

>pdb|3VI3|A Chain A, Crystal Structure Of Alpha5beta1 Integrin Headpiece (Ligand-Free Form) Length = 632

Iteration: 1
 Score =  136 bits (342), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 103/333 (30%), Positives = 157/333 (47%), Gaps = 33/333 (9%)
Query: 21  TKEGPPTDDGSYMGYSVASGFFSGES--GVAVGIPRGARLLGKVALYT-TNMTNLQNITG 77
           T++     D SY+GYSVA G FSG+       G+P+G    G V +   +++ +L N +G
Sbjct: 219 TRQASSIYDDSYLGYSVAVGEFSGDDTEDFVAGVPKGNLTYGYVTILNGSDIRSLYNFSG 278
Query: 78  EQLGAYFAYAVTTSXXXXXXXXXXXXXXPLYTNPTNNVGHYETGRIYVVYQGKETYKFRR 137
           EQ+ +YF YAV  +              PL  + T +    E GR+YV  Q     +   
Sbjct: 279 EQMASYFGYAVAATDVNGDGLDDLLVGAPLLMDRTPDGRPQEVGRVYVYLQHPAGIEPTP 338
Query: 138 LHTRDGKNSKARFGLSLCNLGDINKDGFGDFAVGAPYDGPNERGVVYIYHGSPIGARENP 197
             T  G +   RFG SL  LGD+++DG+ D A+GAP+ G  ++GVV+++ G P G    P
Sbjct: 339 TLTLTGHDEFGRFGSSLTPLGDLDQDGYNDVAIGAPFGGETQQGVVFVFPGGPGGLGSKP 398
Query: 198 SQIITAEEVNFGLQGSLTTFGFSLAGGVDLDENQYPDLVIGAYESNTAFVLRSTAPYDG- 256
           SQ++   +  +    +   FG +L GG DLD N YPDL++G++  + A V R        
Sbjct: 399 SQVL---QPLWAASHTPDFFGSALRGGRDLDGNGYPDLIVGSFGVDKAVVYRGRPIVSAS 455
Query: 257 -----------PNERGVVYIYHGSPIGARE-----NPSQIITAEEVNFGLQELNVQILLD 300
                      P ER       G+P+         N S    A+ + F      V++ LD
Sbjct: 456 ASLTIFPAMFNPEERSCS--LEGNPVACINLSFCLNASGKHVADSIGF-----TVELQLD 508
Query: 301 SKKPKS--PRMFFLSDEGKNVINQTLLLIKGTQ 331
            +K K    R  FL+   +  + QTLL+  G +
Sbjct: 509 WQKQKGGVRRALFLASR-QATLTQTLLIQNGAR 540

>pdb|3FCS|A Chain A, Structure Of Complete Ectodomain Of Integrin Aiibb3 Length = 959

Iteration: 1
 Score =  129 bits (324), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 92/299 (30%), Positives = 137/299 (45%), Gaps = 27/299 (9%)
Query: 32  YMGYSVASGFFSGE---SGVAVGIPRGARLLGKVALYTTNMTNLQNITGEQLGAYFAYAV 88
           Y GYSVA G F G+   +   VG P  +  LG V +  +    L  + GEQ+ +YF ++V
Sbjct: 234 YWGYSVAVGEFDGDLNTTEYVVGAPTWSWTLGAVEILDSYYQRLHRLRGEQMASYFGHSV 293
Query: 89  TTSXXXXXXXXXXXXXXPLYTNPTNNVGHYETGRIYVVYQGKETYKF---RRLHTRDGKN 145
             +              PLY     +    E GR+Y+  Q +  +       L T  G  
Sbjct: 294 AVTDVNGDGRHDLLVGAPLYMESRADRKLAEVGRVYLFLQPRGPHALGAPSLLLT--GTQ 351
Query: 146 SKARFGLSLCNLGDINKDGFGDFAVGAPYDGPNERGVVYIYHGSPIGARENPSQIITAEE 205
              RFG ++  LGD+++DG+ D AV APY GP+ RG V ++ G   G R  PSQ++ +  
Sbjct: 352 LYGRFGSAIAPLGDLDRDGYNDIAVAAPYGGPSGRGQVLVFLGQSEGLRSRPSQVLDSPF 411
Query: 206 VNFGLQGSLTTFGFSLAGGVDLDENQYPDLVIGAYESNTAFVLRSTAPYDG--------- 256
                  + + FGFSL G VD+D+N YPDL++GAY +N   V R+               
Sbjct: 412 ------PTGSAFGFSLRGAVDIDDNGYPDLIVGAYGANQVAVYRAQPVVKASVQLLVQDS 465
Query: 257 --PNERGVVYIYHGSPIGARENPSQIITAEEVNFGLQ-ELNVQILLDSKKPKSPRMFFL 312
             P  +  V     +P+    N    + A   N   +  LN ++ LD +KP+  R   L
Sbjct: 466 LNPAVKSCVLPQTKTPVSCF-NIQMCVGATGHNIPQKLSLNAELQLDRQKPRQGRRVLL 523

>pdb|3FCU|A Chain A, Structure Of Headpiece Of Integrin Aiibb3 In Open Conformation Length = 457

Iteration: 1
 Score =  126 bits (317), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 78/225 (34%), Positives = 114/225 (50%), Gaps = 14/225 (6%)
Query: 32  YMGYSVASGFFSGE---SGVAVGIPRGARLLGKVALYTTNMTNLQNITGEQLGAYFAYAV 88
           Y GYSVA G F G+   +   VG P  +  LG V +  +    L  + GEQ+ +YF ++V
Sbjct: 234 YWGYSVAVGEFDGDLNTTEYVVGAPTWSWTLGAVEILDSYYQRLHRLRGEQMASYFGHSV 293
Query: 89  TTSXXXXXXXXXXXXXXPLYTNPTNNVGHYETGRIYVVYQGKETYKF---RRLHTRDGKN 145
             +              PLY     +    E GR+Y+  Q +  +       L T  G  
Sbjct: 294 AVTDVNGDGRHDLLVGAPLYMESRADRKLAEVGRVYLFLQPRGPHALGAPSLLLT--GTQ 351
Query: 146 SKARFGLSLCNLGDINKDGFGDFAVGAPYDGPNERGVVYIYHGSPIGARENPSQIITAEE 205
              RFG ++  LGD+++DG+ D AV APY GP+ RG V ++ G   G R  PSQ++ +  
Sbjct: 352 LYGRFGSAIAPLGDLDRDGYNDIAVAAPYGGPSGRGQVLVFLGQSEGLRSRPSQVLDSPF 411
Query: 206 VNFGLQGSLTTFGFSLAGGVDLDENQYPDLVIGAYESNTAFVLRS 250
                  + + FGFSL G VD+D+N YPDL++GAY +N   V R+
Sbjct: 412 P------TGSAFGFSLRGAVDIDDNGYPDLIVGAYGANQVAVYRA 450

>pdb|3FCU|A Chain A, Structure Of Headpiece Of Integrin Aiibb3 In Open Conformation Length = 457

Iteration: 1
 Score = 54.3 bits (129), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 48/156 (30%), Positives = 72/156 (46%), Gaps = 31/156 (19%)
Query: 135 FRRLHTRDGKNSKARFGLSLCNLGDINKDGFGDFAVGAPYDGPN-------ERGVVYIYH 187
           ++RLH   G+   + FG S+  + D+N DG  D  VGAP    +       E G VY++ 
Sbjct: 274 YQRLHRLRGEQMASYFGHSVA-VTDVNGDGRHDLLVGAPLYMESRADRKLAEVGRVYLFL 332
Query: 188 GSPIG--ARENPSQIITAEEVNFGLQGSLTTFGFSLAGGVDLDENQYPDLVIGAYESNTA 245
             P G  A   PS ++T  ++          FG ++A   DLD + Y D+ +        
Sbjct: 333 -QPRGPHALGAPSLLLTGTQL-------YGRFGSAIAPLGDLDRDGYNDIAV-------- 376
Query: 246 FVLRSTAPYDGPNERGVVYIYHGSPIGARENPSQII 281
                 APY GP+ RG V ++ G   G R  PSQ++
Sbjct: 377 -----AAPYGGPSGRGQVLVFLGQSEGLRSRPSQVL 407

>pdb|2VC2|A Chain A, Re-Refinement Of Integrin Alphaiibbeta3 Headpiece Bound To Antagonist L-739758 Length = 452

Iteration: 1
 Score =  126 bits (316), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 78/225 (34%), Positives = 114/225 (50%), Gaps = 14/225 (6%)
Query: 32  YMGYSVASGFFSGE---SGVAVGIPRGARLLGKVALYTTNMTNLQNITGEQLGAYFAYAV 88
           Y GYSVA G F G+   +   VG P  +  LG V +  +    L  + GEQ+ +YF ++V
Sbjct: 234 YWGYSVAVGEFDGDLNTTEYVVGAPTWSWTLGAVEILDSYYQRLHRLRGEQMASYFGHSV 293
Query: 89  TTSXXXXXXXXXXXXXXPLYTNPTNNVGHYETGRIYVVYQGKETYKF---RRLHTRDGKN 145
             +              PLY     +    E GR+Y+  Q +  +       L T  G  
Sbjct: 294 AVTDVNGDGRHDLLVGAPLYMESRADRKLAEVGRVYLFLQPRGPHALGAPSLLLT--GTQ 351
Query: 146 SKARFGLSLCNLGDINKDGFGDFAVGAPYDGPNERGVVYIYHGSPIGARENPSQIITAEE 205
              RFG ++  LGD+++DG+ D AV APY GP+ RG V ++ G   G R  PSQ++ +  
Sbjct: 352 LYGRFGSAIAPLGDLDRDGYNDIAVAAPYGGPSGRGQVLVFLGQSEGLRSRPSQVLDSPF 411
Query: 206 VNFGLQGSLTTFGFSLAGGVDLDENQYPDLVIGAYESNTAFVLRS 250
                  + + FGFSL G VD+D+N YPDL++GAY +N   V R+
Sbjct: 412 P------TGSAFGFSLRGAVDIDDNGYPDLIVGAYGANQVAVYRA 450

>pdb|2VC2|A Chain A, Re-Refinement Of Integrin Alphaiibbeta3 Headpiece Bound To Antagonist L-739758 Length = 452

Iteration: 1
 Score = 53.9 bits (128), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 48/156 (30%), Positives = 72/156 (46%), Gaps = 31/156 (19%)
Query: 135 FRRLHTRDGKNSKARFGLSLCNLGDINKDGFGDFAVGAPYDGPN-------ERGVVYIYH 187
           ++RLH   G+   + FG S+  + D+N DG  D  VGAP    +       E G VY++ 
Sbjct: 274 YQRLHRLRGEQMASYFGHSVA-VTDVNGDGRHDLLVGAPLYMESRADRKLAEVGRVYLFL 332
Query: 188 GSPIG--ARENPSQIITAEEVNFGLQGSLTTFGFSLAGGVDLDENQYPDLVIGAYESNTA 245
             P G  A   PS ++T  ++          FG ++A   DLD + Y D+ +        
Sbjct: 333 -QPRGPHALGAPSLLLTGTQL-------YGRFGSAIAPLGDLDRDGYNDIAV-------- 376
Query: 246 FVLRSTAPYDGPNERGVVYIYHGSPIGARENPSQII 281
                 APY GP+ RG V ++ G   G R  PSQ++
Sbjct: 377 -----AAPYGGPSGRGQVLVFLGQSEGLRSRPSQVL 407

>pdb|1TYE|A Chain A, Structural Basis For Allostery In Integrins And Binding Of Ligand- Mimetic Therapeutics To The Platelet Receptor For Fibrinogen Length = 452

Iteration: 1
 Score =  124 bits (311), Expect = 8e-29,   Method: Compositional matrix adjust.
 Identities = 77/225 (34%), Positives = 113/225 (50%), Gaps = 14/225 (6%)
Query: 32  YMGYSVASGFFSGE---SGVAVGIPRGARLLGKVALYTTNMTNLQNITGEQLGAYFAYAV 88
           Y GYSVA G F G+   +   VG P  +  LG V +  +    L  +  EQ+ +YF ++V
Sbjct: 234 YWGYSVAVGEFDGDLNTTEYVVGAPTWSWTLGAVEILDSYYQRLHRLRAEQMASYFGHSV 293
Query: 89  TTSXXXXXXXXXXXXXXPLYTNPTNNVGHYETGRIYVVYQGKETYKF---RRLHTRDGKN 145
             +              PLY     +    E GR+Y+  Q +  +       L T  G  
Sbjct: 294 AVTDVNGDGRHDLLVGAPLYMESRADRKLAEVGRVYLFLQPRGPHALGAPSLLLT--GTQ 351
Query: 146 SKARFGLSLCNLGDINKDGFGDFAVGAPYDGPNERGVVYIYHGSPIGARENPSQIITAEE 205
              RFG ++  LGD+++DG+ D AV APY GP+ RG V ++ G   G R  PSQ++ +  
Sbjct: 352 LYGRFGSAIAPLGDLDRDGYNDIAVAAPYGGPSGRGQVLVFLGQSEGLRSRPSQVLDSPF 411
Query: 206 VNFGLQGSLTTFGFSLAGGVDLDENQYPDLVIGAYESNTAFVLRS 250
                  + + FGFSL G VD+D+N YPDL++GAY +N   V R+
Sbjct: 412 P------TGSAFGFSLRGAVDIDDNGYPDLIVGAYGANQVAVYRA 450

>pdb|1TYE|A Chain A, Structural Basis For Allostery In Integrins And Binding Of Ligand- Mimetic Therapeutics To The Platelet Receptor For Fibrinogen Length = 452

Iteration: 1
 Score = 52.0 bits (123), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 47/156 (30%), Positives = 71/156 (45%), Gaps = 31/156 (19%)
Query: 135 FRRLHTRDGKNSKARFGLSLCNLGDINKDGFGDFAVGAPYDGPN-------ERGVVYIYH 187
           ++RLH    +   + FG S+  + D+N DG  D  VGAP    +       E G VY++ 
Sbjct: 274 YQRLHRLRAEQMASYFGHSVA-VTDVNGDGRHDLLVGAPLYMESRADRKLAEVGRVYLFL 332
Query: 188 GSPIG--ARENPSQIITAEEVNFGLQGSLTTFGFSLAGGVDLDENQYPDLVIGAYESNTA 245
             P G  A   PS ++T  ++          FG ++A   DLD + Y D+ +        
Sbjct: 333 -QPRGPHALGAPSLLLTGTQL-------YGRFGSAIAPLGDLDRDGYNDIAV-------- 376
Query: 246 FVLRSTAPYDGPNERGVVYIYHGSPIGARENPSQII 281
                 APY GP+ RG V ++ G   G R  PSQ++
Sbjct: 377 -----AAPYGGPSGRGQVLVFLGQSEGLRSRPSQVL 407

>pdb|3V4P|A Chain A, Crystal Structure Of A4b7 Headpiece Complexed With Fab Act-1 Length = 597

Iteration: 1
 Score =  103 bits (258), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 92/349 (26%), Positives = 156/349 (44%), Gaps = 48/349 (13%)
Query: 30  GSYMGYSVASGFFSGESGVAV--GIPRGARLLGKVALYTTN---MTNLQNITGEQLGAYF 84
           GSY+GYSV +G F  +    V  G P+  ++ GK  +++ +   +  L  + G++LG+YF
Sbjct: 215 GSYLGYSVGAGHFRSQHTTEVVGGAPQHEQI-GKAYIFSIDEKELNILHEMKGKKLGSYF 273
Query: 85  AYAVTTSXXXXXXXXXXXXXXPLYTNPTNNVGHYETGRIYVVYQGKETYKFRRLHTRDGK 144
             +V                 P+ +         E GR++V            + T    
Sbjct: 274 GASVCAVDLNADGFSDLLVGAPMQSTIR------EEGRVFVYINSGSGAVMNAMETNLVG 327
Query: 145 NSK--ARFGLSLCNLGDINKDGFGDFAVGAPYDGPNERGVVYIYHGSPIGARENPSQIIT 202
           + K  ARFG S+ NLGDI+ DGF D A+GAP +  + +G +YIY+G   G     SQ I 
Sbjct: 328 SDKYAARFGESIVNLGDIDNDGFEDVAIGAPQE-DDLQGAIYIYNGRADGISSTFSQRIE 386
Query: 203 AEEVNFGLQGSLTTFGFSLAGGVDLDENQYPDLVIGAYESNTAFVLR---------STAP 253
             +++     SL+ FG S++G +D D N Y D+ +GA+ S++A +LR         S + 
Sbjct: 387 GLQIS----KSLSMFGQSISGQIDADNNGYVDVAVGAFRSDSAVLLRTRPVVIVDASLSH 442
Query: 254 YDGPNERGVVYIYHGSP-----------IGARENPSQIITAEEVNFGLQELNVQILLDSK 302
            +  N      + +G P              +E P  I+            N+ + ++ K
Sbjct: 443 PESVNRTKFDCVENGWPSVCIDLTLCFSYKGKEVPGYIVLF---------YNMSLDVNRK 493
Query: 303 KPKSPRMFFLSDEGKNVINQTLLLIKGTQFCKSTVDMVCEAERPLCTPI 351
               PR +F S+   +VI  ++ +      C++    + +  R + TPI
Sbjct: 494 AESPPRFYFSSNGTSDVITGSIQVSSREANCRTHQAFMRKDVRDILTPI 542

>pdb|3K6S|A Chain A, Structure Of Integrin Alphaxbeta2 Ectodomain Length = 1095

Iteration: 1
 Score = 70.1 bits (170), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 63/217 (29%), Positives = 99/217 (45%), Gaps = 21/217 (9%)
Query: 31  SYMGYSVASGFFSGESGVAVGIPRGARLLGKVALYTTNMTNLQ---NITGEQLGAYF-AY 86
           SY+GYS     + G   + +G PR  +  GK  ++T      +    +TG Q+G+YF A 
Sbjct: 384 SYLGYSTELALWKGVQSLVLGAPR-YQHTGKAVIFTQVSRQWRMKAEVTGTQIGSYFGAS 442
Query: 87  AVTTSXXXXXXXXXXXXXXPLYTNPTNNVGHYETGRIYV--VYQGKETYKFRRLHTRDGK 144
             +                P Y   T        G++ V  + +G   +    +   +  
Sbjct: 443 LCSVDVDSDGSTDLVLIGAPHYYEQTRG------GQVSVCPLPRGWRRWWCDAVLYGEQG 496
Query: 145 NSKARFGLSLCNLGDINKDGFGDFAVGAPYDGPNERGVVYIYHGSPIGARENP--SQIIT 202
           +   RFG +L  LGD+N D   D  +GAP +  N RG VY++HG  +G   +P  SQ I 
Sbjct: 497 HPWGRFGAALTVLGDVNGDKLTDVVIGAPGEEEN-RGAVYLFHGV-LGPSISPSHSQRIA 554
Query: 203 AEEVNFGLQGSLTTFGFSLAGGVDLDENQYPDLVIGA 239
             +++  LQ     FG +L+GG DL ++   DL +GA
Sbjct: 555 GSQLSSRLQ----YFGQALSGGQDLTQDGLVDLAVGA 587

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	357
3vi3_A	632	Integrin alpha-5; beta propeller fold, rossman fol	7e-69
3vi3_A	632	Integrin alpha-5; beta propeller fold, rossman fol	1e-35
3vi3_A	632	Integrin alpha-5; beta propeller fold, rossman fol	6e-09
3fcs_A	959	Integrin, alpha 2B; beta propeller, rossmann fold,	7e-66
3fcs_A	959	Integrin, alpha 2B; beta propeller, rossmann fold,	2e-27
3fcs_A	959	Integrin, alpha 2B; beta propeller, rossmann fold,	5e-04
3ije_A	967	Integrin alpha-V; integrin structure, activation,	1e-65
3ije_A	967	Integrin alpha-V; integrin structure, activation,	7e-09
3v4v_A	597	Integrin alpha-4; cell adhesion, madcam-1, membran	8e-63
3v4v_A	597	Integrin alpha-4; cell adhesion, madcam-1, membran	1e-09
3t3p_A	457	Integrin alpha-IIB; integrin, cell adhesion, blood	5e-60
3t3p_A	457	Integrin alpha-IIB; integrin, cell adhesion, blood	4e-23
3k6s_A	1095	Integrin alpha-X; cell receptor, adhesion molecule	1e-55
4a7k_A	900	Aldos-2-ulose dehydratase; lyase, dehydratase/isom	2e-05
4a7k_A	900	Aldos-2-ulose dehydratase; lyase, dehydratase/isom	1e-04
2bwr_A	401	Psathyrella velutina lectin; N-acetyl-glucosamine;	2e-05
2bwr_A	401	Psathyrella velutina lectin; N-acetyl-glucosamine;	9e-05
2zux_A	591	YESW protein; beta-propeller, lyase, rhamnose comp	4e-04

>3vi3_A Integrin alpha-5; beta propeller fold, rossman fold, beta sandwich, fibronecti receptor, cell adhesion-immune system complex; HET: NAG BMA MAN; 2.90A {Homo sapiens} PDB: 3vi4_A* Length = 632

 Score =  226 bits (577), Expect = 7e-69
 Identities = 102/339 (30%), Positives = 155/339 (45%), Gaps = 26/339 (7%)

Query: 16  PEFKATKEGPPTDDGSYMGYSVASGFFS--GESGVAVGIPRGARLLGKVALYT-TNMTNL 72
                T++     D SY+GYSVA G FS         G+P+G    G V +   +++ +L
Sbjct: 214 QGQLQTRQASSIYDDSYLGYSVAVGEFSGDDTEDFVAGVPKGNLTYGYVTILNGSDIRSL 273

Query: 73  QNITGEQLGAYFAYAVTTSDVDGDGADDLIIGAPLYTNPTNNVGHYETGRIYVVYQGKET 132
            N +GEQ+ +YF YAV  +DV+GDG DDL++GAPL  + T +    E GR+YV  Q    
Sbjct: 274 YNFSGEQMASYFGYAVAATDVNGDGLDDLLVGAPLLMDRTPDGRPQEVGRVYVYLQHPAG 333

Query: 133 YKFRRLHTRDGKNSKARFGLSLCNLGDINKDGFGDFAVGAPYDGPNERGVVYIYHGSPIG 192
            +     T  G +   RFG SL  LGD+++DG+ D A+GAP+ G  ++GVV+++ G P G
Sbjct: 334 IEPTPTLTLTGHDEFGRFGSSLTPLGDLDQDGYNDVAIGAPFGGETQQGVVFVFPGGPGG 393

Query: 193 ARENPSQIITAEEVNFGLQGSLTTFGFSLAGGVDLDENQYPDLVIGAYESNTAFVLRSTA 252
               PSQ++      +    +   FG +L GG DLD N YPDL++G++  + A V R   
Sbjct: 394 LGSKPSQVLQP---LWAASHTPDFFGSALRGGRDLDGNGYPDLIVGSFGVDKAVVYRGRP 450

Query: 253 PYDGPNERGVVYIYHGSPIGARENPSQIITAEEVNFGLQ--------------ELNVQIL 298
                           +     E    +         L                  V++ 
Sbjct: 451 IVSA----SASLTIFPAMFNPEERSCSLEGNPVACINLSFCLNASGKHVADSIGFTVELQ 506

Query: 299 LDSKKPKS--PRMFFLSDEGKNVINQTLLLIKGTQFCKS 335
           LD +K K    R  FL+     +    L+     + C+ 
Sbjct: 507 LDWQKQKGGVRRALFLASRQATLTQTLLIQNGAREDCRE 545

>3vi3_A Integrin alpha-5; beta propeller fold, rossman fold, beta sandwich, fibronecti receptor, cell adhesion-immune system complex; HET: NAG BMA MAN; 2.90A {Homo sapiens} PDB: 3vi4_A* Length = 632

 Score =  135 bits (341), Expect = 1e-35
 Identities = 67/307 (21%), Positives = 107/307 (34%), Gaps = 57/307 (18%)

Query: 1   MSHSGQVISQNLYDRPEFKATKEGPPTDDGSYMGYSVASGFFSGESGVAVGIPRGARLLG 60
              +  + + N     E+   +       G        S  F+    V +G P      G
Sbjct: 131 PVGTCYLSTDNFTRILEYAPCRSDFSWAAGQGYCQGGFSAEFTKTGRVVLGGPGSYFWQG 190

Query: 61  KVALYTTNMTNLQ-----------------NITGEQLGAYFAYAVTTSDVDGDGADDLII 103
           ++   T                          +     +Y  Y+V   +  GD  +D + 
Sbjct: 191 QILSATQEQIAESYYPEYLINLVQGQLQTRQASSIYDDSYLGYSVAVGEFSGDDTEDFVA 250

Query: 104 GAPLYTNPTNNVGHYETGRIYVVYQGKETYKFRRLHTRDGKNSKARFGLSLCNLGDINKD 163
           G P         G+   G + ++         R L+   G+   + FG ++    D+N D
Sbjct: 251 GVPK--------GNLTYGYVTILNGS----DIRSLYNFSGEQMASYFGYAVA-ATDVNGD 297

Query: 164 GFGDFAVGAPY-------DGPNERGVVYIYHGSPIGARENPSQIITAEEVNFGLQGSLTT 216
           G  D  VGAP          P E G VY+Y   P G    P+  +T  +           
Sbjct: 298 GLDDLLVGAPLLMDRTPDGRPQEVGRVYVYLQHPAGIEPTPTLTLTGHDEF-------GR 350

Query: 217 FGFSLAGGVDLDENQYPDLVIGAYESNTAFVLRSTAPYDGPNERGVVYIYHGSPIGAREN 276
           FG SL    DLD++ Y D+ IG             AP+ G  ++GVV+++ G P G    
Sbjct: 351 FGSSLTPLGDLDQDGYNDVAIG-------------APFGGETQQGVVFVFPGGPGGLGSK 397

Query: 277 PSQIITA 283
           PSQ++  
Sbjct: 398 PSQVLQP 404

>3vi3_A Integrin alpha-5; beta propeller fold, rossman fold, beta sandwich, fibronecti receptor, cell adhesion-immune system complex; HET: NAG BMA MAN; 2.90A {Homo sapiens} PDB: 3vi4_A* Length = 632

 Score = 56.4 bits (135), Expect = 6e-09
 Identities = 52/300 (17%), Positives = 83/300 (27%), Gaps = 52/300 (17%)

Query: 16  PEFKATKEGPPTDDGSYMGYSVASGFF-SGESGVAVGIPRGARLLGKV----ALYTTNMT 70
            E  A   GPP   GS+ G+SV      +    V VG P+       V    A+Y     
Sbjct: 5   AEAPAVLSGPP---GSFFGFSVEFYRPGTDGVSVLVGAPKANTSQPGVLQGGAVYLCPWG 61

Query: 71  ------NLQNITGEQLGAYFAYAVTTSD---------------VDGDGADDLIIGAPLYT 109
                        +      +   ++                 V   G   ++  APLY+
Sbjct: 62  ASPTQCTPIEFDSKGSRLLESSLSSSEGEEPVEYKSLQWFGATVRAHG-SSILACAPLYS 120

Query: 110 NPTNNVGHYETGRIYVVYQGKETYKFRRLHTRDGKNSKARFGLSLCNLGDINKDGFGDFA 169
             T      +      +     T        R   +  A  G              G   
Sbjct: 121 WRTEKEPLSDPVGTCYLSTDNFTRILEYAPCRSDFSWAAGQGYCQGG-FSAEFTKTGRVV 179

Query: 170 VGAPYDGPNERGVVYIYHGSPIGARENPSQIITAEEVNFGLQGSLTT-----FGFSLAGG 224
           +G P      +G +       I     P  +I   +     + + +       G+S+A G
Sbjct: 180 LGGPGSY-FWQGQILSATQEQIAESYYPEYLINLVQGQLQTRQASSIYDDSYLGYSVAVG 238

Query: 225 VDLDENQYPDLVIGAYESNTAFVLRSTAPYDGPNERGVVYIYHGSPIGARENPSQIITAE 284
            +   +   D V G  + N  +              G V I +GS I +  N S    A 
Sbjct: 239 -EFSGDDTEDFVAGVPKGNLTY--------------GYVTILNGSDIRSLYNFSGEQMAS 283

>3fcs_A Integrin, alpha 2B; beta propeller, rossmann fold, EGF domain, cell adhesion, DI mutation, glycoprotein, HOST-virus interaction, M phosphoprotein; HET: NAG MAN; 2.55A {Homo sapiens} Length = 959

 Score =  223 bits (568), Expect = 7e-66
 Identities = 102/344 (29%), Positives = 155/344 (45%), Gaps = 22/344 (6%)

Query: 15  RPEFKATKEGPPTDDGSYMGYSVASGFFSGESG---VAVGIPRGARLLGKVALYTTNMTN 71
             +  +     P     Y GYSVA G F G+       VG P  +  LG V +  +    
Sbjct: 217 SSQSLSFDSSNPEYFDGYWGYSVAVGEFDGDLNTTEYVVGAPTWSWTLGAVEILDSYYQR 276

Query: 72  LQNITGEQLGAYFAYAVTTSDVDGDGADDLIIGAPLYTNPTNNVGHYETGRIYVVYQGKE 131
           L  + GEQ+ +YF ++V  +DV+GDG  DL++GAPLY     +    E GR+Y+  Q + 
Sbjct: 277 LHRLRGEQMASYFGHSVAVTDVNGDGRHDLLVGAPLYMESRADRKLAEVGRVYLFLQPRG 336

Query: 132 TYKFRR-LHTRDGKNSKARFGLSLCNLGDINKDGFGDFAVGAPYDGPNERGVVYIYHGSP 190
            +          G     RFG ++  LGD+++DG+ D AV APY GP+ RG V ++ G  
Sbjct: 337 PHALGAPSLLLTGTQLYGRFGSAIAPLGDLDRDGYNDIAVAAPYGGPSGRGQVLVFLGQS 396

Query: 191 IGARENPSQIITAEEVNFGLQGSLTTFGFSLAGGVDLDENQYPDLVIGAYESNTAFVLRS 250
            G R  PSQ++           + + FGFSL G VD+D+N YPDL++GAY +N   V R+
Sbjct: 397 EGLRSRPSQVLD------SPFPTGSAFGFSLRGAVDIDDNGYPDLIVGAYGANQVAVYRA 450

Query: 251 -----------TAPYDGPNERGVVYIYHGSPIGARENPSQIITAEEVNFGLQELNVQILL 299
                            P  +  V     +P+        +            LN ++ L
Sbjct: 451 QPVVKASVQLLVQDSLNPAVKSCVLPQTKTPVSCFNIQMCVGATGHNIPQKLSLNAELQL 510

Query: 300 DSKKPKSPRMFFLSDEGKNVINQTL-LLIKGTQFCKSTVDMVCE 342
           D +KP+  R   L    +      L L  K +  C +T+  + +
Sbjct: 511 DRQKPRQGRRVLLLGSQQAGTTLNLDLGGKHSPICHTTMAFLRD 554

>3fcs_A Integrin, alpha 2B; beta propeller, rossmann fold, EGF domain, cell adhesion, DI mutation, glycoprotein, HOST-virus interaction, M phosphoprotein; HET: NAG MAN; 2.55A {Homo sapiens} Length = 959

 Score =  112 bits (280), Expect = 2e-27
 Identities = 69/301 (22%), Positives = 111/301 (36%), Gaps = 60/301 (19%)

Query: 1   MSHSGQVISQNLYDRPEFKATKEGPPTDDGSYMGYSVASGFFSGESGVAVGIPRGARLLG 60
              +G   S  +    E      G     G      VA  F S   G+ +          
Sbjct: 166 YCEAG--FSSVVTQAGELVLGAPGGYYFLGLLAQAPVADIFSSYRPGILLW--------- 214

Query: 61  KVALYTTNMTNLQNITGEQLGAYFAYAVTTSDVDGD-GADDLIIGAPLYTNPTNNVGHYE 119
                ++   +  +   E    Y+ Y+V   + DGD    + ++GAP ++     V   +
Sbjct: 215 ---HVSSQSLSFDSSNPEYFDGYWGYSVAVGEFDGDLNTTEYVVGAPTWSWTLGAVEILD 271

Query: 120 TGRIYVVYQGKETYKFRRLHTRDGKNSKARFGLSLCNLGDINKDGFGDFAVGAPYD---- 175
           +              ++RLH   G+   + FG S+  + D+N DG  D  VGAP      
Sbjct: 272 S-------------YYQRLHRLRGEQMASYFGHSVA-VTDVNGDGRHDLLVGAPLYMESR 317

Query: 176 ---GPNERGVVYIYHGSPIG-ARENPSQIITAEEVNFGLQGSLTTFGFSLAGGVDLDENQ 231
                 E G VY++       A   PS ++T  ++          FG ++A   DLD + 
Sbjct: 318 ADRKLAEVGRVYLFLQPRGPHALGAPSLLLTGTQLYGR-------FGSAIAPLGDLDRDG 370

Query: 232 YPDLVIGAYESNTAFVLRSTAPYDGPNERGVVYIYHGSPIGARENPSQIITAEEV---NF 288
           Y D+ +              APY GP+ RG V ++ G   G R  PSQ++ +       F
Sbjct: 371 YNDIAVA-------------APYGGPSGRGQVLVFLGQSEGLRSRPSQVLDSPFPTGSAF 417

Query: 289 G 289
           G
Sbjct: 418 G 418

>3fcs_A Integrin, alpha 2B; beta propeller, rossmann fold, EGF domain, cell adhesion, DI mutation, glycoprotein, HOST-virus interaction, M phosphoprotein; HET: NAG MAN; 2.55A {Homo sapiens} Length = 959

 Score = 41.1 bits (95), Expect = 5e-04
 Identities = 37/261 (14%), Positives = 68/261 (26%), Gaps = 37/261 (14%)

Query: 16  PEFKATKEGPPTDDGSYMGYSVASGF-FSGESGVAVGIPRGARLLGKV--ALY----TTN 68
           P       GP    GS  G+S+       G   + VG PR      +    ++       
Sbjct: 5   PVQLTFYAGPN---GSQFGFSLDFHKDSHGRVAIVVGAPRTLGPSQEETGGVFLCPWRAE 61

Query: 69  MTNLQNITGEQLGAYFAYAVTTSDVDGDGA----------DDLIIGAPLYT----NPTNN 114
                ++  +           T                  D ++  AP         T  
Sbjct: 62  GGQCPSLLFDLRDETRNVGSQTLQTFKARQGLGASVVSWSDVIVACAPWQHWNVLEKTEE 121

Query: 115 VGHYETGRIYVVYQGKETYK-----FRRLHTRDGKNSKARFGLSLCNLG-DINKDGFGDF 168
                 G  ++                   +R    +   +    C  G        G+ 
Sbjct: 122 AEKTPVGSCFLAQPESGRRAEYSPCRGNTLSRIYVENDFSWDKRYCEAGFSSVVTQAGEL 181

Query: 169 AVGAPYDGPNERGVVYIYHGSPIGARENPSQIITAEEVNFGLQGSLT------TFGFSLA 222
            +GAP  G    G++     + I +   P  ++           S         +G+S+A
Sbjct: 182 VLGAPG-GYYFLGLLAQAPVADIFSSYRPGILLWHVSSQSLSFDSSNPEYFDGYWGYSVA 240

Query: 223 GGVDLDENQYPDLVIGAYESN 243
            G    +    + V+GA   +
Sbjct: 241 VGEFDGDLNTTEYVVGAPTWS 261

>3ije_A Integrin alpha-V; integrin structure, activation, EGF domains, FLIM, cell SIGN cell adhesion, cleavage on PAIR of basic residues; HET: NAG BMA MAN; 2.90A {Homo sapiens} PDB: 1jv2_A* 1l5g_A* 1m1x_A* 1u8c_A* Length = 967

 Score =  222 bits (567), Expect = 1e-65
 Identities = 107/361 (29%), Positives = 167/361 (46%), Gaps = 25/361 (6%)

Query: 16  PEFKATKEGPPTDDGSYMGYSVASGFFS--GESGVAVGIPRGARLLGKVALYT-TNMTNL 72
               AT+      D SY+GYSVA G F+  G      G+PR AR LG V +Y   NM++L
Sbjct: 205 NNQLATRTAQAIFDDSYLGYSVAVGDFNGDGIDDFVSGVPRAARTLGMVYIYDGKNMSSL 264

Query: 73  QNITGEQLGAYFAYAVTTSDVDGDGADDLIIGAPLYTNPTNNVGHYETGRIYVVYQGKET 132
            N TGEQ+ AYF ++V  +D++GD   D+ IGAPL+ +  ++    E G++ V  Q    
Sbjct: 265 YNFTGEQMAAYFGFSVAATDINGDDYADVFIGAPLFMDRGSDGKLQEVGQVSVSLQRASG 324

Query: 133 YKFRRLHTRDGKNSKARFGLSLCNLGDINKDGFGDFAVGAPYDGPNERGVVYIYHGSPIG 192
               +    +G    ARFG ++  LGD+++DGF D A+ APY G +++G+VYI++G   G
Sbjct: 325 --DFQTTKLNGFEVFARFGSAIAPLGDLDQDGFNDIAIAAPYGGEDKKGIVYIFNGRSTG 382

Query: 193 ARENPSQIITAEEVNFGLQGSLTTFGFSLAGGVDLDENQYPDLVIGAYESNTAFVLRSTA 252
               PSQI+      +  +    +FG+S+ G  D+D+N YPDL++GA+  + A + R+  
Sbjct: 383 LNAVPSQILEG---QWAARSMPPSFGYSMKGATDIDKNGYPDLIVGAFGVDRAILYRARP 439

Query: 253 PY-------------DGPNERGVVYIYHGSPIGARENPSQIITAEEVNFGLQELNVQILL 299
                          +  N+   +                    + V        V++LL
Sbjct: 440 VITVNAGLEVYPSILNQDNKTCSLPGTALKVSCFNVRFCLKADGKGVLPRKLNFQVELLL 499

Query: 300 DSKKPKSP--RMFFLSDEGKNVINQTLLLIKGTQFCKSTVDMV--CEAERPLCTPITPAV 355
           D  K K    R  FL     +      +   G   C+  +  +      R   TPIT  +
Sbjct: 500 DKLKQKGAIRRALFLYSRSPSHSKNMTISRGGLMQCEELIAYLRDESEFRDKLTPITIFM 559

Query: 356 S 356
            
Sbjct: 560 E 560

>3ije_A Integrin alpha-V; integrin structure, activation, EGF domains, FLIM, cell SIGN cell adhesion, cleavage on PAIR of basic residues; HET: NAG BMA MAN; 2.90A {Homo sapiens} PDB: 1jv2_A* 1l5g_A* 1m1x_A* 1u8c_A* Length = 967

 Score = 56.5 bits (135), Expect = 7e-09
 Identities = 50/302 (16%), Positives = 85/302 (28%), Gaps = 57/302 (18%)

Query: 16  PEFKATKEGPPTDDGSYMGYSVASGFFSGESG--VAVGIPRGARLLGKV----ALY---- 65
            +  A   GP    GSY G++V     S  S   + VG P+       +     +     
Sbjct: 5   VDSPAEYSGPE---GSYFGFAVDFFVPSASSRMFLLVGAPKANTTQPGIVEGGQVLKCDW 61

Query: 66  ----------TTNMTNLQNITGEQL----GAYFAYAVTTSDVDGDGADDLIIGAPLYTNP 111
                          N      + L      +F  +V +        D ++  APLY   
Sbjct: 62  SSTRRCQPIEFDATGNRDYAKDDPLEFKSHQWFGASVRSKQ------DKILACAPLYHWR 115

Query: 112 TNNVGHYETGRIYVVYQGKETYKFRRLHTRDGKNSKARFGLSLCNLGDINKDGFGDFAVG 171
           T      E      +  G +T ++    ++D        G        I+        +G
Sbjct: 116 TEMKQEREPVGTCFLQDGTKTVEYAPCRSQD--IDADGQGFCQGG-FSIDFTKADRVLLG 172

Query: 172 APYDGPNERGVVYIYHGSPIGARENPSQIITAEEVNFGLQGSLTT----FGFSLAGGVDL 227
            P     +  ++       +   +     I                    G+S+A G D 
Sbjct: 173 GPGSFYWQGQLISDQVAEIVSKYDPNVYSIKYNNQLATRTAQAIFDDSYLGYSVAVG-DF 231

Query: 228 DENQYPDLVIGAYESNTAFVLRSTAPYDGPNERGVVYIYHGSPIGARENPSQIITAEEVN 287
           + +   D V G   +                  G+VYIY G  + +  N +    A    
Sbjct: 232 NGDGIDDFVSGVPRAARTL--------------GMVYIYDGKNMSSLYNFTGEQMAA--Y 275

Query: 288 FG 289
           FG
Sbjct: 276 FG 277

>3v4v_A Integrin alpha-4; cell adhesion, madcam-1, membrane; HET: NAG BMA MAN 0DU; 3.10A {Homo sapiens} PDB: 3v4p_A* Length = 597

 Score =  209 bits (533), Expect = 8e-63
 Identities = 96/370 (25%), Positives = 162/370 (43%), Gaps = 30/370 (8%)

Query: 1   MSHSGQVISQNLYDRPEFKATKEGPPTDDGSYMGYSVASGFFSGESG--VAVGIPRGARL 58
              +G +   N+          +      GSY+GYSV +G F  +    V  G P+  ++
Sbjct: 186 SYWTGSLFVYNITTNKYKAFLDKQNQVKFGSYLGYSVGAGHFRSQHTTEVVGGAPQHEQI 245

Query: 59  LGKVALYT---TNMTNLQNITGEQLGAYFAYAVTTSDVDGDGADDLIIGAPLYTNPTNNV 115
            GK  +++     +  L  + G++LG+YF  +V   D++ DG  DL++GAP+ +      
Sbjct: 246 -GKAYIFSIDEKELNILHEMKGKKLGSYFGASVCAVDLNADGFSDLLVGAPMQSTIR--- 301

Query: 116 GHYETGRIYVVYQGKE--TYKFRRLHTRDGKNSKARFGLSLCNLGDINKDGFGDFAVGAP 173
              E GR++V               +        ARFG S+ NLGDI+ DGF D A+GAP
Sbjct: 302 ---EEGRVFVYINSGSGAVMNAMETNLVGSDKYAARFGESIVNLGDIDNDGFEDVAIGAP 358

Query: 174 YDGPNERGVVYIYHGSPIGARENPSQIITAEEVNFGLQGSLTTFGFSLAGGVDLDENQYP 233
            +    +G +YIY+G   G     SQ I   +++  L      FG S++G +D D N Y 
Sbjct: 359 QEDDL-QGAIYIYNGRADGISSTFSQRIEGLQISKSLSM----FGQSISGQIDADNNGYV 413

Query: 234 DLVIGAYESNTAFVLRSTAPYDGPNERGVVYIYHGSPIGARENPSQIITAE-EVNFGLQ- 291
           D+ +GA+ S++A +LR+                + +     EN    +  +  + F  + 
Sbjct: 414 DVAVGAFRSDSAVLLRTRPVVIVDASLSHPESVNRTKFDCVENGWPSVCIDLTLCFSYKG 473

Query: 292 -------ELNVQILLDS--KKPKSPRMFFLSDEGKNVINQTLLLIKGTQFCKSTVDMVCE 342
                   L   + LD   K    PR +F S+   +VI  ++ +      C++    + +
Sbjct: 474 KEVPGYIVLFYNMSLDVNRKAESPPRFYFSSNGTSDVITGSIQVSSREANCRTHQAFMRK 533

Query: 343 AERPLCTPIT 352
             R + TPI 
Sbjct: 534 DVRDILTPIQ 543

>3v4v_A Integrin alpha-4; cell adhesion, madcam-1, membrane; HET: NAG BMA MAN 0DU; 3.10A {Homo sapiens} PDB: 3v4p_A* Length = 597

 Score = 58.7 bits (141), Expect = 1e-09
 Identities = 44/298 (14%), Positives = 73/298 (24%), Gaps = 52/298 (17%)

Query: 16  PEFKATKEGPPTDDGSYMGYSVASGFFSGESGVAVGIPRGARLLGK-----VALYTTNMT 70
            E     +GP     +  GYSV          + VG P    L         A+Y   + 
Sbjct: 5   TESALLYQGPH---NTLFGYSVVLHSHGANRWLLVGAPTANWLANASVINPGAIYRCRIG 61

Query: 71  NLQNITGEQLGAYFAYAVTTS----------------DVDGDGADDLIIGAPLYTNP--T 112
                T EQL                                    ++     + N    
Sbjct: 62  KNPGQTCEQLQLGSPNGEPCGKTCLEERDNQWLGVTLSRQPGENGSIVTCGHRWKNIFYI 121

Query: 113 NNVGHYETGRIYVVYQGKETYKFRRLHT-RDGKNSKARFGLSLCNLGDINKDGFGDFAVG 171
            N     TG  Y V     T   +R+         K     + C  G  +        +G
Sbjct: 122 KNENKLPTGGCYGVPPDLRTELSKRIAPCYQDYVKKFGENFASCQAGISSFYTKDLIVMG 181

Query: 172 APYDGPNERGVVYIYHGSPIGARENPSQIITAEEVNFGLQGSLTTFGFSLAGGVDLDENQ 231
           AP       G +++Y+ +    +    +    +  ++         G+S+  G       
Sbjct: 182 APGS-SYWTGSLFVYNITTNKYKAFLDKQNQVKFGSY--------LGYSVGAG-HFRSQH 231

Query: 232 YPDLVIGAYESNTAFVLRSTAPYDGPNERGVVYIYHGSPIGARENPSQIITAEEVNFG 289
             ++V GA +                   G  YI+                     FG
Sbjct: 232 TTEVVGGAPQHEQI---------------GKAYIFSIDEKELNILHEMKGKKLGSYFG 274

>3t3p_A Integrin alpha-IIB; integrin, cell adhesion, blood clotting, fibrinogen, platele; HET: NAG BMA MAN; 2.20A {Homo sapiens} PDB: 3fcu_A* 3nif_A* 3nid_A* 3t3m_A* 3nig_A* 2vdr_A* 2vc2_A* 2vdk_A* 2vdm_A* 2vdn_A* 2vdl_A* 2vdp_A* 2vdq_A* 2vdo_A* 1txv_A* 1ty3_A* 1ty5_A* 1ty6_A* 1ty7_A* 1tye_A* Length = 457

 Score =  198 bits (505), Expect = 5e-60
 Identities = 86/240 (35%), Positives = 125/240 (52%), Gaps = 10/240 (4%)

Query: 15  RPEFKATKEGPPTDDGSYMGYSVASGFFSGESG---VAVGIPRGARLLGKVALYTTNMTN 71
             +  +     P     Y GYSVA G F G+       VG P  +  LG V +  +    
Sbjct: 217 SSQSLSFDSSNPEYFDGYWGYSVAVGEFDGDLNTTEYVVGAPTWSWTLGAVEILDSYYQR 276

Query: 72  LQNITGEQLGAYFAYAVTTSDVDGDGADDLIIGAPLYTNPTNNVGHYETGRIYVVYQGKE 131
           L  + GEQ+ +YF ++V  +DV+GDG  DL++GAPLY     +    E GR+Y+  Q + 
Sbjct: 277 LHRLRGEQMASYFGHSVAVTDVNGDGRHDLLVGAPLYMESRADRKLAEVGRVYLFLQPRG 336

Query: 132 TYKFRR-LHTRDGKNSKARFGLSLCNLGDINKDGFGDFAVGAPYDGPNERGVVYIYHGSP 190
            +          G     RFG ++  LGD+++DG+ D AV APY GP+ RG V ++ G  
Sbjct: 337 PHALGAPSLLLTGTQLYGRFGSAIAPLGDLDRDGYNDIAVAAPYGGPSGRGQVLVFLGQS 396

Query: 191 IGARENPSQIITAEEVNFGLQGSLTTFGFSLAGGVDLDENQYPDLVIGAYESNTAFVLRS 250
            G R  PSQ++           + + FGFSL G VD+D+N YPDL++GAY +N   V R+
Sbjct: 397 EGLRSRPSQVLD------SPFPTGSAFGFSLRGAVDIDDNGYPDLIVGAYGANQVAVYRA 450

>3t3p_A Integrin alpha-IIB; integrin, cell adhesion, blood clotting, fibrinogen, platele; HET: NAG BMA MAN; 2.20A {Homo sapiens} PDB: 3fcu_A* 3nif_A* 3nid_A* 3t3m_A* 3nig_A* 2vdr_A* 2vc2_A* 2vdk_A* 2vdm_A* 2vdn_A* 2vdl_A* 2vdp_A* 2vdq_A* 2vdo_A* 1txv_A* 1ty3_A* 1ty5_A* 1ty6_A* 1ty7_A* 1tye_A* Length = 457

 Score = 98.8 bits (245), Expect = 4e-23
 Identities = 60/267 (22%), Positives = 102/267 (38%), Gaps = 43/267 (16%)

Query: 27  TDDGSYMGYSVASGFFSGESGVAVGIPRGARLLGKVALYTTN--MTNLQNITGEQLGAYF 84
           T  G  +  +    +F G    A      +     + L+  +    +  +   E    Y+
Sbjct: 176 TQAGELVLGAPGGYYFLGLLAQAPVADIFSSYRPGILLWHVSSQSLSFDSSNPEYFDGYW 235

Query: 85  AYAVTTSDVDGDG-ADDLIIGAPLYTNPTNNVGHYETGRIYVVYQGKETYKFRRLHTRDG 143
            Y+V   + DGD    + ++GAP ++     V   ++              ++RLH   G
Sbjct: 236 GYSVAVGEFDGDLNTTEYVVGAPTWSWTLGAVEILDSY-------------YQRLHRLRG 282

Query: 144 KNSKARFGLSLCNLGDINKDGFGDFAVGAPYD-------GPNERGVVYIYHGSPIGAREN 196
           +   + FG S+  + D+N DG  D  VGAP            E G VY++          
Sbjct: 283 EQMASYFGHSVA-VTDVNGDGRHDLLVGAPLYMESRADRKLAEVGRVYLFLQPRGPHALG 341

Query: 197 PSQIITAEEVNFGLQGSLTTFGFSLAGGVDLDENQYPDLVIGAYESNTAFVLRSTAPYDG 256
              ++      +G       FG ++A   DLD + Y D+ + A             PY G
Sbjct: 342 APSLLLTGTQLYGR------FGSAIAPLGDLDRDGYNDIAVAA-------------PYGG 382

Query: 257 PNERGVVYIYHGSPIGARENPSQIITA 283
           P+ RG V ++ G   G R  PSQ++ +
Sbjct: 383 PSGRGQVLVFLGQSEGLRSRPSQVLDS 409

>3k6s_A Integrin alpha-X; cell receptor, adhesion molecule, cell adhesion, pyrrolidone carboxylic acid; HET: NAG MAN; 3.50A {Homo sapiens} PDB: 3k71_A* 3k72_A* Length = 1095

 Score =  195 bits (495), Expect = 1e-55
 Identities = 94/380 (24%), Positives = 144/380 (37%), Gaps = 49/380 (12%)

Query: 1   MSHSGQVISQNLYDRPEFKATKEGPPTDDGSYMGYSVASGFFSGESGVAVGIPRGARLLG 60
            + SG          P F    +       SY+GYS     + G   + +G PR     G
Sbjct: 354 FTWSGGAFLYPPNMSPTFINMSQENVDMRDSYLGYSTELALWKGVQSLVLGAPRYQHT-G 412

Query: 61  KVALYT---TNMTNLQNITGEQLGAYFAYAVTTSDVDGDGADDLI-IGAPLYTNPTNNVG 116
           K  ++T           +TG Q+G+YF  ++ + DVD DG+ DL+ IGAP Y        
Sbjct: 413 KAVIFTQVSRQWRMKAEVTGTQIGSYFGASLCSVDVDSDGSTDLVLIGAPHYYE------ 466

Query: 117 HYETGRIYVVYQGKETYKFRRLHTRDGKNSK--ARFGLSLCNLGDINKDGFGDFAVGAPY 174
               G++ V    +   ++       G+      RFG +L  LGD+N D   D  +GAP 
Sbjct: 467 QTRGGQVSVCPLPRGWRRWWCDAVLYGEQGHPWGRFGAALTVLGDVNGDKLTDVVIGAPG 526

Query: 175 DGPNERGVVYIYHGSP-IGARENPSQIITAEEVNFGLQGSLTTFGFSLAGGVDLDENQYP 233
                RG VY++HG        + SQ I   +++  LQ     FG +L+GG DL ++   
Sbjct: 527 -EEENRGAVYLFHGVLGPSISPSHSQRIAGSQLSSRLQ----YFGQALSGGQDLTQDGLV 581

Query: 234 DLVIGAYESNTAFVLRSTAPYDGPNERGVVYIYHGSPIGARENPS--------------- 278
           DL +GA       +LR+      P     V +        R                   
Sbjct: 582 DLAVGA--RGQVLLLRTR-----PVLWVGVSMQFIPAEIPRSAFECREQVVSEQTLVQSN 634

Query: 279 ---QIITAEEVNFGLQELNVQILLDS---KKPKSPRMFFLSDEGKNVINQTLLLIKGTQF 332
               I    +   G ++L   + LD        SPR  F   E KN     + ++     
Sbjct: 635 ICLYIDKRSKNLLGSRDLQSSVTLDLALDPGRLSPRATF--QETKNRSLSRVRVLGLKAH 692

Query: 333 CKSTVDMVCEAERPLCTPIT 352
           C++   ++        TPIT
Sbjct: 693 CENFNLLLPSCVEDSVTPIT 712

>4a7k_A Aldos-2-ulose dehydratase; lyase, dehydratase/isomerase, lignin degradation, cortalcerone/microthecin forming, metalloenzyme; 2.00A {Phanerochaete chrysosporium} PDB: 4a7y_A* 4a7z_A* Length = 900

 Score = 45.4 bits (106), Expect = 2e-05
 Identities = 18/173 (10%), Positives = 44/173 (25%), Gaps = 21/173 (12%)

Query: 82  AYFAYAVTTSDVDGDGADDLIIGAPLYTNPTNNVGHYETGRIYVVYQGKETYKFRRLHTR 141
             F  A+  +D+  +G +D+II        + +      GR+  +    E      + T 
Sbjct: 91  LDFPVAMHYADITKNGFNDVIITDQY--GSSMDDIWAYGGRVSWLENPGELRDNWTMRTI 148

Query: 142 DGKNSKARFGLSLCNLGDINKDGFGDFAVGAPYDGPNERG-----VVYIYHGSPIGAREN 196
                  R        G   +               ++       +++     P   +  
Sbjct: 149 GHSPGMHRL-----KAGHFTRTDRVQVVAVPIVVASSDLTTPADVIIFTAPDDPRSEQLW 203

Query: 197 PSQIITAEEVNFGLQGSLTTFGFSLAGGVDLDENQYPDLVIGAYESNTAFVLR 249
              ++    +             ++    + D     D +I A       +  
Sbjct: 204 QRDVVGTRHL---------VHEVAIVPAAETDGEMRFDQIILAGRDGVDCLWY 247

>4a7k_A Aldos-2-ulose dehydratase; lyase, dehydratase/isomerase, lignin degradation, cortalcerone/microthecin forming, metalloenzyme; 2.00A {Phanerochaete chrysosporium} PDB: 4a7y_A* 4a7z_A* Length = 900

 Score = 43.1 bits (100), Expect = 1e-04
 Identities = 35/248 (14%), Positives = 70/248 (28%), Gaps = 38/248 (15%)

Query: 28  DDGSYMGYSVASGFFSGESGVAVGIPRGARLLGKVALYTTNMTNLQNITGEQLGAYFAYA 87
            D        A  F      V          + +       +     + G+  G    + 
Sbjct: 281 GDDYAGYICSAEAFHGNTVSVYTKPAGSPTGIVRAEWTRHVLDVFGPLNGKHTG--SIHQ 338

Query: 88  VTTSDVDGDGADDLIIGAPLYTNPTNNVGHYETGRIYVVYQGKETYKFRRLHTRDGKNSK 147
           V  +D+DGDG D+ ++       P        TG        +   KF +         +
Sbjct: 339 VVCADIDGDGEDEFLVAMMGADPPDFQ----RTGVWCYKLVDRTNMKFSKTKVSSVSAGR 394

Query: 148 ARFGLSLCNLGDINKDGF------GDFAVGAPYDGPNERGVVYIYHGSPIGARENPSQII 201
                      + +  G         ++V   ++ PN    V++  G  +  R +     
Sbjct: 395 IA-------TANFHSQGSEVDIATISYSVPGYFESPNPSINVFLSTG-ILAERLD----- 441

Query: 202 TAEEVNFGLQGSLTTFGFSLAGGVDLDENQYPDLVIGAYESNTAFVLRSTAPYDGPNERG 261
             EEV   +  + +T   +    +D+   +   +V+              A  D      
Sbjct: 442 --EEVMLRVVRAGSTRFKTEMEFLDVAGKKLTLVVLP-----------PFARLDVERNVS 488

Query: 262 VVYIYHGS 269
            V +  G+
Sbjct: 489 GVKVMAGT 496

>2bwr_A Psathyrella velutina lectin; N-acetyl-glucosamine; HET: MES; 1.5A {Psathyrella velutina} PDB: 2bwm_A* 2c25_A* 2c4d_A* Length = 401

 Score = 44.9 bits (106), Expect = 2e-05
 Identities = 27/170 (15%), Positives = 47/170 (27%), Gaps = 29/170 (17%)

Query: 84  FAYAVTTSDVDGDGADDLIIGAPLYTNPTNNVGHYETGRIYVVY-QGKETYKFRRL-HTR 141
             +    +D+   G  D++                  G IY+    G   +   +L    
Sbjct: 114 EKHIRFMADLRKTGRADIVGFG--------------DGGIYISRNNGGGQFAPAQLALNN 159

Query: 142 DGKNSKARFGLSLCNLGDINKDGFGDFAVGAPYDGPNERGVVYIYHGSPIGARENPSQII 201
            G     R    L  L D+  DG  D               VYI   S  G  +    ++
Sbjct: 160 FGYAQGWRLDRHLRFLADVTGDGLLDVVG-------FGENQVYIARNSGNGTFQPAQAVV 212

Query: 202 TAEEVNFGLQGSLTTFGFSLAGGVDLDENQYPDLVIGAYESNTAFVLRST 251
                NF +     T         DL  ++  D++   +     +   + 
Sbjct: 213 N----NFCIGAGGWTISAHPRVVADLTGDRKADIL--GFGVAGVYTSLNN 256

>2bwr_A Psathyrella velutina lectin; N-acetyl-glucosamine; HET: MES; 1.5A {Psathyrella velutina} PDB: 2bwm_A* 2c25_A* 2c4d_A* Length = 401

 Score = 43.0 bits (101), Expect = 9e-05
 Identities = 29/171 (16%), Positives = 50/171 (29%), Gaps = 28/171 (16%)

Query: 82  AYFAYAVTTSDVDGDGADDLIIGAPLYTNPTNNVGHYETGRIYVVYQGKETYKFRRL-HT 140
              A+    +D+ GD   D++                  G    +  G  T+    L   
Sbjct: 223 TISAHPRVVADLTGDRKADILGFGV-------------AGVYTSLNNGNGTFGAVNLVLK 269

Query: 141 RDGKNSKARFGLSLCNLGDINKDGFGDFAVGAPYDGPNERGVVYIYHGSPIGARENPSQI 200
             G NS  R    +  +  +     GD  +G    G      VY+   +  G      ++
Sbjct: 270 DFGVNSGWRVEKHVRCVSSLTNKKVGDI-IGFGDAG------VYVALNNGNGTFGPVKRV 322

Query: 201 ITAEEVNFGLQGSLTTFGFSLAGGVDLDENQYPDLVIGAYESNTAFVLRST 251
           I     NFG                DL  +   D+V   +  N+ +   + 
Sbjct: 323 ID----NFGYNQGWRVDKHPRFVV-DLTGDGCADIV--GFGENSVWACMNK 366

>2zux_A YESW protein; beta-propeller, lyase, rhamnose complex; HET: RAM; 1.32A {Bacillus subtilis} PDB: 2z8s_A* 2z8r_A* Length = 591

 Score = 41.2 bits (96), Expect = 4e-04
 Identities = 26/102 (25%), Positives = 43/102 (42%), Gaps = 5/102 (4%)

Query: 83  YFAYAVTTSDVDGDGADDLIIGAPLYTNPTNNVGHYETGRIYVVYQGKETYKFRRLHTRD 142
           Y A   +  DVDGDG  +LI    L  +P+N+  + + G    V          +L   +
Sbjct: 112 YSANDASVGDVDGDGQYELI----LKWDPSNSKDNSQDGYTGDVLIDAYKLDGTKLWRIN 167

Query: 143 -GKNSKARFGLSLCNLGDINKDGFGDFAVGAPYDGPNERGVV 183
            GKN +A    +   + D++ DG  + A+       +  G V
Sbjct: 168 LGKNIRAGAHYTQFMVYDLDGDGKAEVAMKTADGTKDGTGKV 209

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	357
3v4v_A	597	Integrin alpha-4; cell adhesion, madcam-1, membran	100.0
3vi3_A	632	Integrin alpha-5; beta propeller fold, rossman fol	100.0
3k6s_A	1095	Integrin alpha-X; cell receptor, adhesion molecule	100.0
3fcs_A	959	Integrin, alpha 2B; beta propeller, rossmann fold,	100.0
3ije_A	967	Integrin alpha-V; integrin structure, activation,	100.0
3t3p_A	457	Integrin alpha-IIB; integrin, cell adhesion, blood	100.0
3v4v_A	597	Integrin alpha-4; cell adhesion, madcam-1, membran	100.0
3vi3_A	632	Integrin alpha-5; beta propeller fold, rossman fol	99.97
3t3p_A	457	Integrin alpha-IIB; integrin, cell adhesion, blood	99.96
3ije_A	967	Integrin alpha-V; integrin structure, activation,	99.96
3k6s_A	1095	Integrin alpha-X; cell receptor, adhesion molecule	99.95
3fcs_A	959	Integrin, alpha 2B; beta propeller, rossmann fold,	99.95
2bwr_A	401	Psathyrella velutina lectin; N-acetyl-glucosamine;	99.42
2bwr_A	401	Psathyrella velutina lectin; N-acetyl-glucosamine;	99.39
4a7k_A	900	Aldos-2-ulose dehydratase; lyase, dehydratase/isom	99.3
4a7k_A	900	Aldos-2-ulose dehydratase; lyase, dehydratase/isom	99.18
2zux_A	591	YESW protein; beta-propeller, lyase, rhamnose comp	97.96
2zuy_A	620	YESX protein; beta-propeller, lyase; 1.65A {Bacill	97.94
2zux_A	591	YESW protein; beta-propeller, lyase, rhamnose comp	97.07
2zuy_A	620	YESX protein; beta-propeller, lyase; 1.65A {Bacill	96.63

>3v4v_A Integrin alpha-4; cell adhesion, madcam-1, membrane; HET: NAG BMA MAN 0DU; 3.10A {Homo sapiens} PDB: 3v4p_A*

Probab=100.00  E-value=2.5e-56  Score=458.44  Aligned_cols=327  Identities=29%  Similarity=0.514  Sum_probs=264.8

Q ss_pred             CcceEEEEecCCCCceEEeecCCCCCCCCcceeeEEEEeec--CCCeEEEeecCCCCeeeEEEEEEcCCce---eeeccC
Q psy1434           3 HSGQVISQNLYDRPEFKATKEGPPTDDGSYMGYSVASGFFS--GESGVAVGIPRGARLLGKVALYTTNMTN---LQNITG   77 (357)
Q Consensus         3 ~~g~~~~~~~~~~~~~~~~~~~~~~~~~sy~G~sva~gd~~--g~~~~vvGaP~~~~~~G~V~i~~~~~~~---~~~~~g   77 (357)
                      .+|+|++|+...........+......++||||||++|||+  |..+||+|||++ ++.|+|++|..+...   .+.+.|
T Consensus       188 w~G~v~~~~~~~~~~~~~~~~~~~~~~~sy~GySva~gD~ngDG~~DlvvGAP~~-~~~G~V~v~~~~~~~~~~~~~l~G  266 (597)
T 3v4v_A          188 WTGSLFVYNITTNKYKAFLDKQNQVKFGSYLGYSVGAGHFRSQHTTEVVGGAPQH-EQIGKAYIFSIDEKELNILHEMKG  266 (597)
T ss_dssp             HTBEEEEEETTTTBCCBBCCTTCCSCTTCCBTSSEEEECSSCTTSCEEEEEETTG-GGTCEEEEEEECSSSEEEEEEEEC
T ss_pred             cccceEEEEccCceeeecccccccccccCcCccEEEEEEECCCCCeEEEEecccc-cCCceEEEEecCCCceeEEEEecc
Confidence            47999999875432222122223445789999999999998  778999999995 789999999865433   356789


Q ss_pred             CccccccceEEEEEEeCCCCCceEEEeccCcCCCCCCCCCccccEEEEEEeCCCcc-ceEEeeeecCCC-cCCCcceeEE
Q psy1434          78 EQLGAYFAYAVTTSDVDGDGADDLIIGAPLYTNPTNNVGHYETGRIYVVYQGKETY-KFRRLHTRDGKN-SKARFGLSLC  155 (357)
Q Consensus        78 ~~~~s~fG~sva~~D~ngDG~~DlvvGaP~~~~~~~~~~~~~~G~Vyv~~~~~~~~-~~~~~~~~~g~~-~~~~fG~sva  155 (357)
                      ++.++|||++|+++|+|+||++||+||||++..      ..+.|+||||.+.+... .|.....+.|.. ..++||.+|+
T Consensus       267 ~~~g~~fG~sva~~D~ngDG~~DlvVGap~~~~------~~~~G~v~vy~~~g~g~~~~~~~~~l~g~~~~~~~FG~sva  340 (597)
T 3v4v_A          267 KKLGSYFGASVCAVDLNADGFSDLLVGAPMQST------IREEGRVFVYINSGSGAVMNAMETNLVGSDKYAARFGESIV  340 (597)
T ss_dssp             SSTTCCTTSEEEEECTTCSSSCEEEEEETTCCS------SSCCCEEEEEEECSSSSCEECCSSCBCTTCCTTCCTTSCEE
T ss_pred             cccCCCCcceEEEEeeCCCCCceEEEEcccccC------CCcCCeEEEEEECCCCcceeccceEEeCCcccccccccccc
Confidence            999999999999999999999999999999852      12479999999887632 254444566653 4689999999


Q ss_pred             eeccCCCCCCceeEEcCCCCCCCCccEEEEEeCCCCCCCCCCceEEecceeccccCCCccccceeeeccccCCCCCCCcE
Q psy1434         156 NLGDINKDGFGDFAVGAPYDGPNERGVVYIYHGSPIGARENPSQIITAEEVNFGLQGSLTTFGFSLAGGVDLDENQYPDL  235 (357)
Q Consensus       156 ~~gDiN~DG~~Dl~VgaP~~~~~~~G~Vyiy~g~~~g~~~~~~q~i~~~~~~~g~~~~~~~FG~si~~~~D~d~DG~~Dl  235 (357)
                      .+||||+||++||+||||+++ ...|+||||+++..|+...++|+|.+....    +..+.||.++++.+|+|+||++||
T Consensus       341 ~~gDlngDG~~Dl~VGap~~~-~~~G~vyv~~g~~~g~~~~~sq~i~g~~~~----~~~~~fG~sv~g~~DlngDG~~DL  415 (597)
T 3v4v_A          341 NLGDIDNDGFEDVAIGAPQED-DLQGAIYIYNGRADGISSTFSQRIEGLQIS----KSLSMFGQSISGQIDADNNGYVDV  415 (597)
T ss_dssp             CCCCSSCSSSCCEEEEETTHH-HHTBEEEEECEETTEECSSCSEEEEGGGTC----TTCCSEEEEEEEEECSSSSSSCEE
T ss_pred             cccccCCCCCcceEEeccccc-CCCCcEEEecCCCCCccccccEEEeccccc----ccccccceeEEcccccCCCCCccE
Confidence            899999999999999999863 357999999999888887888999876543    257899999998899999999999


Q ss_pred             EEeecCCCcEEEEccCCCCCCCCCCCeEEEEEcccccccCCCceeeecccccccce------------------------
Q psy1434         236 VIGAYESNTAFVLRSTAPYDGPNERGVVYIYHGSPIGARENPSQIITAEEVNFGLQ------------------------  291 (357)
Q Consensus       236 ~VGa~~~~~v~~~rsrpv~~~~~~~G~v~~~~~~~~~~~~~~~q~i~~~~~~c~~~------------------------  291 (357)
                      +|||+++++|++||+|||          +.+..++ +.|    .+|+++.++|...                        
T Consensus       416 ~VGa~~~~~v~~lrsrpv----------~~v~~~~-~~p----~~i~~~~~~C~~~~~~~~c~~~~~C~~~~~~~~~~~~  480 (597)
T 3v4v_A          416 AVGAFRSDSAVLLRTRPV----------VIVDASL-SHP----ESVNRTKFDCVENGWPSVCIDLTLCFSYKGKEVPGYI  480 (597)
T ss_dssp             EEEEGGGTEEEEECBCCE----------EEEEEEE-ECC----SBCCTTCCCSCBTTBCCCEEEEEEEEEEECTTCCSEE
T ss_pred             EEeccCCCeEEEEccCcE----------EEEEEEE-eCC----cccCcccccCccCCcceEEEEEEEEEEEeccCCCCce
Confidence            999999999999999999          8888877 444    3588888888531                        


Q ss_pred             eEEEEEEEccCCCC--CCceEEecCCCceEEEEEEEEeCCCCCeEEEEEEeecCCcceecceeeeee
Q psy1434         292 ELNVQILLDSKKPK--SPRMFFLSDEGKNVINQTLLLIKGTQFCKSTVDMVCEAERPLCTPITPAVS  356 (357)
Q Consensus       292 ~~~~~~~ld~~~~~--~~r~~f~~~~~~~~~~~~~~l~~~~~~C~~~~~~~~~~~~D~l~pi~~~~~  356 (357)
                      .|+|+++||..|++  .+|++|+++..++.+++++.|..+++.|+++++||++|++|||+||.|+|+
T Consensus       481 ~l~~~l~lD~~r~~~~~~R~~F~~~~~~~~~~~~~~l~~~~~~C~~~~~~l~~~~~D~l~PI~~~l~  547 (597)
T 3v4v_A          481 VLFYNMSLDVNRKAESPPRFYFSSNGTSDVITGSIQVSSREANCRTHQAFMRKDVRDILTPIQIEAA  547 (597)
T ss_dssp             EEEEEEESSCSCCSSCCCSEECSSSTTCSEEEEEEEEESSSCEEEEEEEEECSSCCCCSSCEEEEEE
T ss_pred             EEEEEEEEccccccCCCCCeEECCCCCccEEEEEEEecCCCCeeEEEEEEecCCCCccccCEEEEEE
Confidence            46777888886642  589999754344677888988877778999999999999999999999986

>3vi3_A Integrin alpha-5; beta propeller fold, rossman fold, beta sandwich, fibronecti receptor, cell adhesion-immune system complex; HET: NAG BMA MAN; 2.90A {Homo sapiens} PDB: 3vi4_A*

Probab=100.00  E-value=1.6e-55  Score=454.31  Aligned_cols=314  Identities=35%  Similarity=0.593  Sum_probs=260.3

Q ss_pred             CCCCCCCcceeeEEEEeec--CCCeEEEeecCCCCeeeEEEEEEcC-CceeeeccCCccccccceEEEEEEeCCCCCceE
Q psy1434          25 PPTDDGSYMGYSVASGFFS--GESGVAVGIPRGARLLGKVALYTTN-MTNLQNITGEQLGAYFAYAVTTSDVDGDGADDL  101 (357)
Q Consensus        25 ~~~~~~sy~G~sva~gd~~--g~~~~vvGaP~~~~~~G~V~i~~~~-~~~~~~~~g~~~~s~fG~sva~~D~ngDG~~Dl  101 (357)
                      ...++++||||||+++||+  +..++++|||++....|+|++|... ....+.+.|+++++|||++|+++|+|+||++||
T Consensus       223 ~~~~~~sy~G~sva~gd~ngDg~~DlvvGaP~~~~~~G~V~v~~~~~~~~~~~l~G~q~gs~FG~sva~~D~NgDG~~DL  302 (632)
T 3vi3_A          223 SSIYDDSYLGYSVAVGEFSGDDTEDFVAGVPKGNLTYGYVTILNGSDIRSLYNFSGEQMASYFGYAVAATDVNGDGLDDL  302 (632)
T ss_dssp             CGGGCSCCBTSSEEEECCSSSSSCEEEEEEEEEETTEEEEEEECSSSCCEEEEEECSSTTSCTTSEEEEECCSSSSSCEE
T ss_pred             ccccCCCCcccEEEEEEecCCCCeEEEEeccccCCccCEEEEEECCCCcEEEEEecccccCcCcceEEEEecCCCCccce
Confidence            3346789999999999998  6789999999964456999999853 344567889999999999999999999999999


Q ss_pred             EEeccCcCCCCCCCCCccccEEEEEEeCCCccceEEeeeecCCCcCCCcceeEEeeccCCCCCCceeEEcCCCCCCCCcc
Q psy1434         102 IIGAPLYTNPTNNVGHYETGRIYVVYQGKETYKFRRLHTRDGKNSKARFGLSLCNLGDINKDGFGDFAVGAPYDGPNERG  181 (357)
Q Consensus       102 vvGaP~~~~~~~~~~~~~~G~Vyv~~~~~~~~~~~~~~~~~g~~~~~~fG~sva~~gDiN~DG~~Dl~VgaP~~~~~~~G  181 (357)
                      +||||+++.........+.|+||||.+......|.....+.|.+..++||.+++.+||+|+||++|||||||+++....|
T Consensus       303 vVGAP~~~~~~~~g~~~~~G~VyVy~g~~~g~~~~~~~~l~G~~~~~~FG~sva~~gDlngDG~~DlaVGap~~~~~~~G  382 (632)
T 3vi3_A          303 LVGAPLLMDRTPDGRPQEVGRVYVYLQHPAGIEPTPTLTLTGHDEFGRFGSSLTPLGDLDQDGYNDVAIGAPFGGETQQG  382 (632)
T ss_dssp             EEEETTCEEECTTCCEEECCEEEEECBCSSCBCSSCSEEEECCSTTCCGGGEEEEEESSSSSSSCEEEEEETTCSTTSSC
T ss_pred             eeecccccccccccccccCCEEEEEEcCCCCccccCceEecCccccCCCceEEEeeeccCCCCCcCEEEeCCcCCcCCCc
Confidence            99999985432111123579999999887633455555677777779999999999999999999999999987556789


Q ss_pred             EEEEEeCCCCCCCCCCceEEecceeccccCCCccccceeeeccccCCCCCCCcEEEeecCCCcEEEEccCCCCCCCCCCC
Q psy1434         182 VVYIYHGSPIGARENPSQIITAEEVNFGLQGSLTTFGFSLAGGVDLDENQYPDLVIGAYESNTAFVLRSTAPYDGPNERG  261 (357)
Q Consensus       182 ~Vyiy~g~~~g~~~~~~q~i~~~~~~~g~~~~~~~FG~si~~~~D~d~DG~~Dl~VGa~~~~~v~~~rsrpv~~~~~~~G  261 (357)
                      +||||+++..|+...++|+|.+....   .+..+.||.++++++|+|+||++||+|||+++++|++||+|||        
T Consensus       383 ~Vyv~~G~~~Gl~~~~sq~i~g~~~~---~~~~~~FG~sla~~~DlngDG~~DL~VGa~g~d~v~llrsrpv--------  451 (632)
T 3vi3_A          383 VVFVFPGGPGGLGSKPSQVLQPLWAA---SHTPDFFGSALRGGRDLDGNGYPDLIVGSFGVDKAVVYRGRPI--------  451 (632)
T ss_dssp             EEEEECEETTEECSSCSEEECCSSCC---CSSCCCTTSSEEESSCCSSSSCCCEEEEEGGGTEEEEECBCCE--------
T ss_pred             eEEEEecCCCCCCcccceEEecCccc---cccccccceeEEeeeccCCCCceeEEEecCCCceEEEEcCCcE--------
Confidence            99999999988888888999876532   1257899999999889999999999999999999999999999        


Q ss_pred             eEEEEEcccccccCCCceeeecccccccce------------------------eEEEEEEEccCCC--CCCceEEecCC
Q psy1434         262 VVYIYHGSPIGARENPSQIITAEEVNFGLQ------------------------ELNVQILLDSKKP--KSPRMFFLSDE  315 (357)
Q Consensus       262 ~v~~~~~~~~~~~~~~~q~i~~~~~~c~~~------------------------~~~~~~~ld~~~~--~~~r~~f~~~~  315 (357)
                        +.+..++.|.|.    .|++++++|.+.                        .|+|+++||..|+  ..+|++|.+ +
T Consensus       452 --v~v~~~~~~~P~----~i~~~~~~C~~~~~~~~c~~~~~C~~~~~~~~~~~~~~~~~l~lD~~~~~~~~~R~~f~~-~  524 (632)
T 3vi3_A          452 --VSASASLTIFPA----MFNPEERSCSLEGNPVACINLSFCLNASGKHVADSIGFTVELQLDWQKQKGGVRRALFLA-S  524 (632)
T ss_dssp             --EEEEEEEEESSC----EECTTCCCEESSSSEECEEEEEEEEEEECSSSCSEEEEEEEEEETTTTTTTSCCCEEETT-T
T ss_pred             --EEEEeEEEECch----hcCcccccccCCCCceEEEEEEEEEEEecCCCCCceeEEEEEEEeccccccCcCceEEcC-C
Confidence              888888888774    599998888541                        4667788898763  258999964 4


Q ss_pred             CceEEEEEEEEeCCCC-CeEEEEEEeec--CCcceecceeeeee
Q psy1434         316 GKNVINQTLLLIKGTQ-FCKSTVDMVCE--AERPLCTPITPAVS  356 (357)
Q Consensus       316 ~~~~~~~~~~l~~~~~-~C~~~~~~~~~--~~~D~l~pi~~~~~  356 (357)
                      +.+.+++++.|..+.. .|+++++||++  |+||||+||.|+|+
T Consensus       525 ~~~~~~~~~~l~~~~~~~C~~~~~~l~~~~~~~D~l~PI~~~l~  568 (632)
T 3vi3_A          525 RQATLTQTLLIQNGAREDCREMKIYLRNESEFRDKLSPIHIALN  568 (632)
T ss_dssp             SSSEEEEEEEEETTCCCEEEEEEEEECCCSCCSCCSSCEEEEEE
T ss_pred             CCceEEEEEEEcCCCCCeEEEEEEEEeccCCccccccCEEEEEE
Confidence            4556788888886654 69999999999  99999999999986

>3k6s_A Integrin alpha-X; cell receptor, adhesion molecule, cell adhesion, pyrrolidone carboxylic acid; HET: NAG MAN; 3.50A {Homo sapiens} PDB: 3k71_A* 3k72_A*

Probab=100.00  E-value=1.1e-53  Score=465.42  Aligned_cols=323  Identities=27%  Similarity=0.413  Sum_probs=269.9

Q ss_pred             CcceEEEEecCCCCceEEeecCCCCCCCCcceeeEEEEeecCCCeEEEeecCCCCeeeEEEEEEcCCc---eeeeccCCc
Q psy1434           3 HSGQVISQNLYDRPEFKATKEGPPTDDGSYMGYSVASGFFSGESGVAVGIPRGARLLGKVALYTTNMT---NLQNITGEQ   79 (357)
Q Consensus         3 ~~g~~~~~~~~~~~~~~~~~~~~~~~~~sy~G~sva~gd~~g~~~~vvGaP~~~~~~G~V~i~~~~~~---~~~~~~g~~   79 (357)
                      -+|++++|..++...+.+.......+.++||||||++|++++..++|+||||+ ++.|+|++|+.+..   ..+.+.|++
T Consensus       356 w~G~v~~~~~~~~~~~~~~~~~~~~~~~sylGySVa~~~~~g~~~~v~GAP~~-~~~G~V~i~~~~~~~~~~~~~~~g~~  434 (1095)
T 3k6s_A          356 WSGGAFLYPPNMSPTFINMSQENVDMRDSYLGYSTELALWKGVQSLVLGAPRY-QHTGKAVIFTQVSRQWRMKAEVTGTQ  434 (1095)
T ss_dssp             TTBEEEECCSSSCCEEECCCSSCCCCCSCCBTSSEECCCCSSSCEEEEEETTG-GGTCEEEEEECCTTTCCEEEEECCSS
T ss_pred             ccceeEEecCCCcceeeccccccccccccccceeeEEeccCCceEEEEEcccc-cccceEEEEEecCCcceEEeecccCc
Confidence            46999999987777777766655667899999999999999888999999995 79999999987533   345688999


Q ss_pred             cccccceEEEEEEeCCCCCceE-EEeccCcCCCCCCCCCccccEEEEEEeCCCccceEEeeeecCCC--cCCCcceeEEe
Q psy1434          80 LGAYFAYAVTTSDVDGDGADDL-IIGAPLYTNPTNNVGHYETGRIYVVYQGKETYKFRRLHTRDGKN--SKARFGLSLCN  156 (357)
Q Consensus        80 ~~s~fG~sva~~D~ngDG~~Dl-vvGaP~~~~~~~~~~~~~~G~Vyv~~~~~~~~~~~~~~~~~g~~--~~~~fG~sva~  156 (357)
                      .++|||++|+++|+|+||++|| +||||+++..      ...|+||||.+..+...|.....+.|..  ..++||.+++.
T Consensus       435 ~gs~fG~sva~~DvngDG~~DllvvGAP~~~~~------~~~G~Vyvy~~~~~~~~~~~~~~l~g~~~~~~~~FG~sva~  508 (1095)
T 3k6s_A          435 IGSYFGASLCSVDVDSDGSTDLVLIGAPHYYEQ------TRGGQVSVCPLPRGWRRWWCDAVLYGEQGHPWGRFGAALTV  508 (1095)
T ss_dssp             TTSCTTSCEEEECSSSSSSCCEEEEECSSCCSS------CCCBCEEEEECCSSTTCCCSCSSCCCCCSCSSCCBTSCEEE
T ss_pred             ccCcCCceEEEEEeCCCCCccEEEECCccccCc------CCCCEEEEEEeCCCCcceeeeEEeecccCCccccCccceEe
Confidence            9999999999999999999999 8999998642      2479999999876534576555666654  47999999999


Q ss_pred             eccCCCCCCceeEEcCCCCCCCCccEEEEEeCCCC-CCCCCCceEEecceeccccCCCccccceeeeccccCCCCCCCcE
Q psy1434         157 LGDINKDGFGDFAVGAPYDGPNERGVVYIYHGSPI-GARENPSQIITAEEVNFGLQGSLTTFGFSLAGGVDLDENQYPDL  235 (357)
Q Consensus       157 ~gDiN~DG~~Dl~VgaP~~~~~~~G~Vyiy~g~~~-g~~~~~~q~i~~~~~~~g~~~~~~~FG~si~~~~D~d~DG~~Dl  235 (357)
                      +||+|+||++||+||||+++ ...|+||||++++. |+...+.|++.+....    ...++||.++++.+|+|+||++||
T Consensus       509 ~gD~NgDG~~Dl~VGAP~~~-~~~G~vyi~~g~~~~g~~~~~~q~l~~~~~~----~~~~~FG~sv~~~~D~dgDG~~DL  583 (1095)
T 3k6s_A          509 LGDVNGDKLTDVVIGAPGEE-ENRGAVYLFHGVLGPSISPSHSQRIAGSQLS----SRLQYFGQALSGGQDLTQDGLVDL  583 (1095)
T ss_dssp             EECSSSSSCCEEEEECTTTT-TSCCBEEEEEBCSSSCBCSSCSBCCBTTSSC----TTCSSEEEEEEECCCCSCSSSCEE
T ss_pred             ecccCCCCCcCEEEeCCcCC-CCCCEEEEecCCCCCCccccceEEeecCCCC----ccccccCceeecccccCCCCCccE
Confidence            99999999999999999875 57899999999987 7777788888766442    246889999998899999999999


Q ss_pred             EEeecCCCcEEEEccCCCCCCCCCCCeEEEEEcccccccCCCceeeecccccccce------------------------
Q psy1434         236 VIGAYESNTAFVLRSTAPYDGPNERGVVYIYHGSPIGARENPSQIITAEEVNFGLQ------------------------  291 (357)
Q Consensus       236 ~VGa~~~~~v~~~rsrpv~~~~~~~G~v~~~~~~~~~~~~~~~q~i~~~~~~c~~~------------------------  291 (357)
                      +|||  .|+|++||+||+          ..+..+..|.|.    .|+++.++|..+                        
T Consensus       584 ~VGa--~G~v~v~r~~pv----------~~~~~~~~~~p~----~i~~~~~~C~~~~~~~~~~~~~~~Cf~~~~~~~~~~  647 (1095)
T 3k6s_A          584 AVGA--RGQVLLLRTRPV----------LWVGVSMQFIPA----EIPRSAFECREQVVSEQTLVQSNICLYIDKRSKNLL  647 (1095)
T ss_dssp             EEEE--SSCEEEEEBCCB----------CCEEEEEEESSC----SCCSTTSSCCSSSCCCCEEEEEEEEEEECCCTTTCS
T ss_pred             EEEc--CCCeeEeccCCc----------eEEeEEEEECcc----ccCccccCcccCCCCceEEEEEEEEEEEeCcCcccc
Confidence            9999  489999999999          667777777764    377777777421                        


Q ss_pred             -------eEEEEEEEccCCCCCCceEEecCCCceEEEEEEEEeCCCCCeEEEEEEeecCCcceecceeeeee
Q psy1434         292 -------ELNVQILLDSKKPKSPRMFFLSDEGKNVINQTLLLIKGTQFCKSTVDMVCEAERPLCTPITPAVS  356 (357)
Q Consensus       292 -------~~~~~~~ld~~~~~~~r~~f~~~~~~~~~~~~~~l~~~~~~C~~~~~~~~~~~~D~l~pi~~~~~  356 (357)
                             .|+|+++||..| ..+|++|.+ ++.+.+++++.|..+ +.|+++++||++|++|||+||.|+|+
T Consensus       648 ~~~~~~~~l~~~l~lD~~r-~~~R~~f~~-~~~~~~~~~~~l~~~-~~C~~~~~~l~~~~~D~~~pI~~~l~  716 (1095)
T 3k6s_A          648 GSRDLQSSVTLDLALDPGR-LSPRATFQE-TKNRSLSRVRVLGLK-AHCENFNLLLPSCVEDSVTPITLRLN  716 (1095)
T ss_dssp             STTTSCEEEEEEEEESTTS-SSCCCEETT-TCSSEEEEEEEECSS-CEEEEEEEEECSCCSCCSSCEEEEEE
T ss_pred             cccccceeEEEEEEEcCCC-ccCCeEEcC-CCCceEEEEEEecCC-CeEEEEEEEEecccccccCcEEEEEE
Confidence                   277888899877 578999964 445578888888766 66999999999999999999999986

>3fcs_A Integrin, alpha 2B; beta propeller, rossmann fold, EGF domain, cell adhesion, DI mutation, glycoprotein, HOST-virus interaction, M phosphoprotein; HET: NAG MAN; 2.55A {Homo sapiens}

Probab=100.00  E-value=7.8e-53  Score=451.84  Aligned_cols=310  Identities=33%  Similarity=0.576  Sum_probs=251.6

Q ss_pred             CCCCCCCcceeeEEEEeecC--CC-eEEEeecCCCCeeeEEEEEEcCCceeeeccCCccccccceEEEEEEeCCCCCceE
Q psy1434          25 PPTDDGSYMGYSVASGFFSG--ES-GVAVGIPRGARLLGKVALYTTNMTNLQNITGEQLGAYFAYAVTTSDVDGDGADDL  101 (357)
Q Consensus        25 ~~~~~~sy~G~sva~gd~~g--~~-~~vvGaP~~~~~~G~V~i~~~~~~~~~~~~g~~~~s~fG~sva~~D~ngDG~~Dl  101 (357)
                      ++.++++||||||++|||++  .. ++++|||++..+.|+|++|.......+.+.|++.++|||++|+++|+|+||++||
T Consensus       227 ~~~~~~sy~G~sva~gD~~gDG~~d~~vvGaPr~~~~~G~V~i~~~~~~~~~~l~G~q~gs~fG~sva~gD~NgDG~~DL  306 (959)
T 3fcs_A          227 NPEYFDGYWGYSVAVGEFDGDLNTTEYVVGAPTWSWTLGAVEILDSYYQRLHRLRGEQMASYFGHSVAVTDVNGDGRHDL  306 (959)
T ss_dssp             CGGGTTCCTTSEEEEECCSSCSSSCEEEEEETTHHHHTCEEEEECTTCCEEEEEECSSTTSCTTSEEEEECCSSSSSCEE
T ss_pred             CcccCCCccccEEEEEEECCCCCeeEEEEECCcccCCcceEEEECCCceEEEEeccccCCCCceeEEEEEEecCCCccce
Confidence            34568899999999999993  34 7999999964467999998766666778999999999999999999999999999


Q ss_pred             EEeccCcCCCCCCCCCccccEEEEEEeCCCccceEEe-eeecCCCcCCCcceeEEeeccCCCCCCceeEEcCCCCCCCCc
Q psy1434         102 IIGAPLYTNPTNNVGHYETGRIYVVYQGKETYKFRRL-HTRDGKNSKARFGLSLCNLGDINKDGFGDFAVGAPYDGPNER  180 (357)
Q Consensus       102 vvGaP~~~~~~~~~~~~~~G~Vyv~~~~~~~~~~~~~-~~~~g~~~~~~fG~sva~~gDiN~DG~~Dl~VgaP~~~~~~~  180 (357)
                      +||||++..........+.|+||||.+..+...|... ..+.|.+..++||.+++.+||+|+||++||+||||+++..+.
T Consensus       307 vVGAP~~~~~~~~~~~~~~G~VyV~~~~~g~~~~~~~~~~l~G~~~~~~FG~sva~~gD~ngDG~~Dl~Vgap~~~~~~~  386 (959)
T 3fcs_A          307 LVGAPLYMESRADRKLAEVGRVYLFLQPRGPHALGAPSLLLTGTQLYGRFGSAIAPLGDLDRDGYNDIAVAAPYGGPSGR  386 (959)
T ss_dssp             EEEETTCEEEETTEEEEECBEEEEECCCSTTCCCCSCSEEEECCSTTCCBTSEEEEEECSSCSSSCEEEEEETTCSTTSS
T ss_pred             eEeccccccccccccccCCceEEEEecCCCCCcccccceEEecccCCCCCceeEEeeecCCCCCCcceEEecccCCCCCC
Confidence            9999998642111111357999999986432344433 456787778999999998999999999999999998755678


Q ss_pred             cEEEEEeCCCCCCCCCCceEEecceeccccCCCccccceeeeccccCCCCCCCcEEEeecCCCcEEEEccCCCCCCCCCC
Q psy1434         181 GVVYIYHGSPIGARENPSQIITAEEVNFGLQGSLTTFGFSLAGGVDLDENQYPDLVIGAYESNTAFVLRSTAPYDGPNER  260 (357)
Q Consensus       181 G~Vyiy~g~~~g~~~~~~q~i~~~~~~~g~~~~~~~FG~si~~~~D~d~DG~~Dl~VGa~~~~~v~~~rsrpv~~~~~~~  260 (357)
                      |+||||++++.|+...+.|++.+...      ..+.||.++++.+|+|+||++||+|||+++++|++||+|||       
T Consensus       387 G~Vyvy~g~~~g~~~~~~q~~~~~~~------~~~~fG~sv~~~gDlngDG~~Dl~VGa~g~g~v~~~rsrpv-------  453 (959)
T 3fcs_A          387 GQVLVFLGQSEGLRSRPSQVLDSPFP------TGSAFGFSLRGAVDIDDNGYPDLIVGAYGANQVAVYRAQPV-------  453 (959)
T ss_dssp             CEEEEECEETTEECSSCSEEEECCSC------TTCCTTSSEEEEECSSSSSSCEEEEEEGGGTEEEEECBCCE-------
T ss_pred             ceEEEEecCCCCcccccceeeccCcC------CcccccceeeeeeccCCCCCCCEEEecCCCCeEEEEecCCc-------
Confidence            99999999988888778888875421      35899999998889999999999999999999999999999       


Q ss_pred             CeEEEEEcccccccCCCceeeecccccccce--------------------------eEEEEEEEccCCCC-CCceEEec
Q psy1434         261 GVVYIYHGSPIGARENPSQIITAEEVNFGLQ--------------------------ELNVQILLDSKKPK-SPRMFFLS  313 (357)
Q Consensus       261 G~v~~~~~~~~~~~~~~~q~i~~~~~~c~~~--------------------------~~~~~~~ld~~~~~-~~r~~f~~  313 (357)
                         +.+..++.+.|    . |++++++|...                          .++|+++||..|++ .+|++|.+
T Consensus       454 ---v~v~~~~~~~p----~-i~~~~~~C~~~~~~~~~~C~~~~~C~~~~~~~~~~~i~~~~~l~lD~~~~r~~~R~~f~~  525 (959)
T 3fcs_A          454 ---VKASVQLLVQD----S-LNPAVKSCVLPQTKTPVSCFNIQMCVGATGHNIPQKLSLNAELQLDRQKPRQGRRVLLLG  525 (959)
T ss_dssp             ---EEEEEEEEECS----C-BCTTCCCEECSSSCCEEEEEEEEEEEEEECTTCCSSCEEEEEEEETTTSCGGGCSEEETT
T ss_pred             ---eEEEeEEEecC----C-cCccccCcccCCCCceEEEEEEEEEEeEecCCCCceEEEEEEEEEcccccCcCCceEEcC
Confidence               88888877755    3 88887777431                          35567788887643 58999964


Q ss_pred             CCCceEEEEEEEEeC-CCCCeEEEEEEeec--CCcceecceeeeee
Q psy1434         314 DEGKNVINQTLLLIK-GTQFCKSTVDMVCE--AERPLCTPITPAVS  356 (357)
Q Consensus       314 ~~~~~~~~~~~~l~~-~~~~C~~~~~~~~~--~~~D~l~pi~~~~~  356 (357)
                       ++.+.+++++.|.. +.+.|+++++||++  ++||||+||.|+|+
T Consensus       526 -~~~~~~~~~~~l~~~~~~~C~~~~~~l~~~~~~~D~l~PI~~~l~  570 (959)
T 3fcs_A          526 -SQQAGTTLNLDLGGKHSPICHTTMAFLRDEADFRDKLSPIVLSLN  570 (959)
T ss_dssp             -TCSSEEEEEEECTTCSSCEEEEEEEEECCGGGCCCCSSCEEEEEE
T ss_pred             -CCCceEEEEEEEcCCCCceEEEEEEEEeccccccceeeeEEEEEE
Confidence             44556777788764 45679999999997  59999999999986

>3ije_A Integrin alpha-V; integrin structure, activation, EGF domains, FLIM, cell SIGN cell adhesion, cleavage on PAIR of basic residues; HET: NAG BMA MAN; 2.90A {Homo sapiens} PDB: 4g1e_A* 4g1m_A* 1jv2_A* 1l5g_A* 1m1x_A* 1u8c_A*

Probab=100.00  E-value=2e-51  Score=442.47  Aligned_cols=314  Identities=33%  Similarity=0.602  Sum_probs=258.9

Q ss_pred             cCCCCCCCCcceeeEEEEeec--CCCeEEEeecCCCCeeeEEEEEEcC-CceeeeccCCccccccceEEEEEEeCCCCCc
Q psy1434          23 EGPPTDDGSYMGYSVASGFFS--GESGVAVGIPRGARLLGKVALYTTN-MTNLQNITGEQLGAYFAYAVTTSDVDGDGAD   99 (357)
Q Consensus        23 ~~~~~~~~sy~G~sva~gd~~--g~~~~vvGaP~~~~~~G~V~i~~~~-~~~~~~~~g~~~~s~fG~sva~~D~ngDG~~   99 (357)
                      +..+.++++||||||++|||+  |..|+++|||++..+.|+|++|... ....+.+.|++.++|||++++++|+|+||++
T Consensus       212 ~~~~~~~~sy~G~sVa~gD~ngDG~~DlvvGaP~~~~~~G~V~i~~~~~~~~~~~~~g~~~gs~fG~sva~~D~ngDG~~  291 (967)
T 3ije_A          212 TAQAIFDDSYLGYSVAVGDFNGDGIDDFVSGVPRAARTLGMVYIYDGKNMSSLYNFTGEQMAAYFGFSVAATDINGDDYA  291 (967)
T ss_dssp             CCCGGGCSCCBTSEEEEECCSSSSSCEEEEEETTHHHHTCEEEEECSSSSCEEEEEECSSTTSCTTSEEEEECTTSSSCC
T ss_pred             cCCCccCCCccceEEEEEEECCCCCeEEEEEecccCCCCcEEEEEeCCCceeeeEecccccCCceeEEEEEEecCCCCCc
Confidence            334456789999999999999  6789999999965578999999753 3345678899999999999999999999999


Q ss_pred             eEEEeccCcCCCCCCCCCccccEEEEEEeCCCccceEEeeeecCCCcCCCcceeEEeeccCCCCCCceeEEcCCCCCCCC
Q psy1434         100 DLIIGAPLYTNPTNNVGHYETGRIYVVYQGKETYKFRRLHTRDGKNSKARFGLSLCNLGDINKDGFGDFAVGAPYDGPNE  179 (357)
Q Consensus       100 DlvvGaP~~~~~~~~~~~~~~G~Vyv~~~~~~~~~~~~~~~~~g~~~~~~fG~sva~~gDiN~DG~~Dl~VgaP~~~~~~  179 (357)
                      ||+||||++..........+.|+||||.+.+. +.|. ...+.|....++||.+++.+||+|+||++||+||||+++...
T Consensus       292 DLvVgaP~~~~~~~~g~~~~~G~v~vy~~~g~-g~f~-~~~l~g~~~~~~fG~sva~~gDlngDG~~Dl~VGap~~~~~~  369 (967)
T 3ije_A          292 DVFIGAPLFMDRGSDGKLQEVGQVSVSLQRAS-GDFQ-TTKLNGFEVFARFGSAIAPLGDLDQDGFNDIAIAAPYGGEDK  369 (967)
T ss_dssp             EEEEEETTCEEECTTSCEEECCEEEEEECCSS-SCCE-EEEEECSSTTSCTTSEEEEEESTTCSSSCEEEEEETTCSSSS
T ss_pred             eEEEEcccccccccccccccCCcEEEEEECCC-Ccee-eeeccCccccCCCcceEEeeeccCCCCCcceEEeccccCCCC
Confidence            99999999864321111145799999998775 5677 555677777899999999899999999999999999854467


Q ss_pred             ccEEEEEeCCCCCCCCCCceEEecceeccccCCCccccceeeeccccCCCCCCCcEEEeecCCCcEEEEccCCCCCCCCC
Q psy1434         180 RGVVYIYHGSPIGARENPSQIITAEEVNFGLQGSLTTFGFSLAGGVDLDENQYPDLVIGAYESNTAFVLRSTAPYDGPNE  259 (357)
Q Consensus       180 ~G~Vyiy~g~~~g~~~~~~q~i~~~~~~~g~~~~~~~FG~si~~~~D~d~DG~~Dl~VGa~~~~~v~~~rsrpv~~~~~~  259 (357)
                      .|+||||++++.|++..+.|++.+....   .+..+.||+++++.+|+|+||++||+||+++++.|++||+|||      
T Consensus       370 ~G~vyiy~g~~~G~~~~~sq~i~~~~~~---~~~~~~FG~sv~~~~DldgDG~~DL~VGa~g~~~v~l~rsrpv------  440 (967)
T 3ije_A          370 KGIVYIFNGRSTGLNAVPSQILEGQWAA---RSMPPSFGYSMKGATDIDKNGYPDLIVGAFGVDRAILYRARPV------  440 (967)
T ss_dssp             CCEEEEEEEETTEECSSCSEEEECCCCC---SSSCCCEEEEEEEEECCSSSSSCEEEEEEGGGTEEEEECBCCE------
T ss_pred             CceEEEEecCCCCCcccceeeecccccc---ccccccccceeeeeEccCCCCcccEEEeccCCCeEEEEecCCe------
Confidence            8999999999988888889998876432   1246899999998899999999999999999999999999999      


Q ss_pred             CCeEEEEEcccccccCCCceeeecccccccce---------------------------eEEEEEEEccCCCC--CCceE
Q psy1434         260 RGVVYIYHGSPIGARENPSQIITAEEVNFGLQ---------------------------ELNVQILLDSKKPK--SPRMF  310 (357)
Q Consensus       260 ~G~v~~~~~~~~~~~~~~~q~i~~~~~~c~~~---------------------------~~~~~~~ld~~~~~--~~r~~  310 (357)
                          +.+..++.|.|.    .|++++++|.+.                           .|+|+++||..|++  .+|++
T Consensus       441 ----v~v~~~~~~~p~----~i~~~~~~C~~~~~~~~~~c~~~~~C~~~~~~~~~~~~~~l~~~l~lD~~r~~~~~~R~~  512 (967)
T 3ije_A          441 ----ITVNAGLEVYPS----ILNQDNKTCSLPGTALKVSCFNVRFCLKADGKGVLPRKLNFQVELLLDKLKQKGAIRRAL  512 (967)
T ss_dssp             ----EEEEEEEEESSC----EECSSCCCSBCSSSSSBCEEEEEEEEEEEECSSSCCSEEEEEEEEEESHHHHTTSCCCEE
T ss_pred             ----EEEEEEEEEChh----hcCccccCcccCCCccceEEEEEEEEEEEecccCCCCcceEEEEEEEcCccccCCCCCeE
Confidence                888888888764    588888888541                           46677788876532  48999


Q ss_pred             EecCCCceEEEEEEEEeCC-CCCeEEEEEEeec--CCcceecceeeeee
Q psy1434         311 FLSDEGKNVINQTLLLIKG-TQFCKSTVDMVCE--AERPLCTPITPAVS  356 (357)
Q Consensus       311 f~~~~~~~~~~~~~~l~~~-~~~C~~~~~~~~~--~~~D~l~pi~~~~~  356 (357)
                      |.+ ++.+.+++++.|..+ .+.|+++++||++  |++|||+||.|+|+
T Consensus       513 f~~-~~~~~~~~~~~l~~~~~~~C~~~~~~l~~~~~~~D~l~pI~~~l~  560 (967)
T 3ije_A          513 FLY-SRSPSHSKNMTISRGGLMQCEELIAYLRDESEFRDKLTPITIFME  560 (967)
T ss_dssp             ETT-TCSSEEEEEEEEESSSCCEEEEEEEEECCTTTCCCCSSCEEEEEE
T ss_pred             EcC-CCCceEEEEEEEeCCCCCeEEEEEEEEeccCCcceeeccEEEEEE
Confidence            964 455677888888754 4579999999997  99999999999986

>3t3p_A Integrin alpha-IIB; integrin, cell adhesion, blood clotting, fibrinogen, platele; HET: NAG BMA MAN; 2.20A {Homo sapiens} PDB: 3fcu_A* 3nif_A* 3nid_A* 3t3m_A* 3nig_A* 2vdr_A* 2vc2_A* 2vdk_A* 2vdm_A* 2vdn_A* 2vdl_A* 2vdp_A* 2vdq_A* 2vdo_A* 1txv_A* 1ty3_A* 1ty5_A* 1ty6_A* 1ty7_A* 1tye_A*

Probab=100.00  E-value=5.7e-44  Score=355.49  Aligned_cols=223  Identities=39%  Similarity=0.706  Sum_probs=187.4

Q ss_pred             CCCCCCCcceeeEEEEeecCC---CeEEEeecCCCCeeeEEEEEEcCCceeeeccCCccccccceEEEEEEeCCCCCceE
Q psy1434          25 PPTDDGSYMGYSVASGFFSGE---SGVAVGIPRGARLLGKVALYTTNMTNLQNITGEQLGAYFAYAVTTSDVDGDGADDL  101 (357)
Q Consensus        25 ~~~~~~sy~G~sva~gd~~g~---~~~vvGaP~~~~~~G~V~i~~~~~~~~~~~~g~~~~s~fG~sva~~D~ngDG~~Dl  101 (357)
                      ++.++++||||||++|+++++   +++|+|||++..+.|+|++|..+....+.+.|+|+++|||++|+++|+|+||.+||
T Consensus       227 ~~~~~~sylGySv~~gd~~gdg~~~~~vvGAP~~~~~~G~V~i~~~~~~~~~~l~G~q~gs~fG~sva~gDvNgDG~~DL  306 (457)
T 3t3p_A          227 NPEYFDGYWGYSVAVGEFDGDLNTTEYVVGAPTWSWTLGAVEILDSYYQRLHRLRGEQMASYFGHSVAVTDVNGDGRHDL  306 (457)
T ss_dssp             CGGGTTCCTTSEEEEECCSSCTTSCEEEEEETTHHHHTCEEEEECTTCCEEEEEECSSTTSCTTSEEEEECCSSSSCCEE
T ss_pred             CcccCCCcceeEEEEEEeCCCCceeEEEEcCCCCCCccceEEEEcCCCeEEEEecccccCCCCcceEEEEEeCCCCccce
Confidence            345678999999999999843   58999999965688999999766667788999999999999999999999999999


Q ss_pred             EEeccCcCCCCCCCCCccccEEEEEEeCCCccceEEe-eeecCCCcCCCcceeEEeeccCCCCCCceeEEcCCCCCCCCc
Q psy1434         102 IIGAPLYTNPTNNVGHYETGRIYVVYQGKETYKFRRL-HTRDGKNSKARFGLSLCNLGDINKDGFGDFAVGAPYDGPNER  180 (357)
Q Consensus       102 vvGaP~~~~~~~~~~~~~~G~Vyv~~~~~~~~~~~~~-~~~~g~~~~~~fG~sva~~gDiN~DG~~Dl~VgaP~~~~~~~  180 (357)
                      +||||+++.........+.|+||||.+..+...|... ..+.|.+..++||.+|+.+||+|+||++||+||||+++....
T Consensus       307 vVGAP~~~~~~~~~~~~~~G~VyV~~g~~g~~~~~~~~~~l~G~~~~~~fG~sva~~gD~ngDG~~Dl~vgap~~~~~~~  386 (457)
T 3t3p_A          307 LVGAPLYMESRADRKLAEVGRVYLFLQPRGPHALGAPSLLLTGTQLYGRFGSAIAPLGDLDRDGYNDIAVAAPYGGPSGR  386 (457)
T ss_dssp             EEEETTCEEEETTTEEEECCEEEEECCCSSSCCCCSCSEEEECCSTTCCTTSEEEEEECSSCSSSCEEEEEETTCSTTSS
T ss_pred             eeccccccccccccccCCCCEEEEEecCCCCCccccCceEEeCCcCCCCCCceEEeccCCCCCCCcceeEeccccCCCCC
Confidence            9999998542111112357999999985432345433 357788778999999998999999999999999998654678


Q ss_pred             cEEEEEeCCCCCCCCCCceEEecceeccccCCCccccceeeeccccCCCCCCCcEEEeecCCCcEEEEccCCC
Q psy1434         181 GVVYIYHGSPIGARENPSQIITAEEVNFGLQGSLTTFGFSLAGGVDLDENQYPDLVIGAYESNTAFVLRSTAP  253 (357)
Q Consensus       181 G~Vyiy~g~~~g~~~~~~q~i~~~~~~~g~~~~~~~FG~si~~~~D~d~DG~~Dl~VGa~~~~~v~~~rsrpv  253 (357)
                      |+||||+++..|+...++|+|.+...      ..++||.+|++.+|+|+||++||+|||+++++|++||+|||
T Consensus       387 G~vyv~~G~~~G~~~~~~q~l~~~~~------~~~~fG~sv~~~gDlngDG~~Dl~VGa~g~~~v~l~rsrpv  453 (457)
T 3t3p_A          387 GQVLVFLGQSEGLRSRPSQVLDSPFP------TGSAFGFSLRGAVDIDDNGYPDLIVGAYGANQVAVYRAQPV  453 (457)
T ss_dssp             CEEEEECEETTEECSSCSEEEECSSC------TTCCTTSEEEEEECSSSSSSCEEEEEEGGGTEEEEECBCCC
T ss_pred             ceEEEEeCCCCCcccCcceEEeCCcc------ccccCcceeeeeeccCCCCCccEEEecCCCCeEEEeCCCcE
Confidence            99999999998888778888876421      35899999998889999999999999999999999999999

>3v4v_A Integrin alpha-4; cell adhesion, madcam-1, membrane; HET: NAG BMA MAN 0DU; 3.10A {Homo sapiens} PDB: 3v4p_A*

Probab=100.00  E-value=6.6e-33  Score=284.68  Aligned_cols=221  Identities=26%  Similarity=0.480  Sum_probs=171.2

Q ss_pred             CcceeeEEEEeecCCCeEEEeecCCCCeeeEEEEEEcCCceeee----ccCCccccccceEEEEEEeCCCCCceEEEecc
Q psy1434          31 SYMGYSVASGFFSGESGVAVGIPRGARLLGKVALYTTNMTNLQN----ITGEQLGAYFAYAVTTSDVDGDGADDLIIGAP  106 (357)
Q Consensus        31 sy~G~sva~gd~~g~~~~vvGaP~~~~~~G~V~i~~~~~~~~~~----~~g~~~~s~fG~sva~~D~ngDG~~DlvvGaP  106 (357)
                      ...|+|++   +.. +.+++|||+.+.|.|.|++|..+...+..    ..+++.++|||++|+++|+|+||..|||+|||
T Consensus       165 ~q~G~Sa~---~~~-d~~v~GApG~~~w~G~v~~~~~~~~~~~~~~~~~~~~~~~sy~GySva~gD~ngDG~~DlvvGAP  240 (597)
T 3v4v_A          165 CQAGISSF---YTK-DLIVMGAPGSSYWTGSLFVYNITTNKYKAFLDKQNQVKFGSYLGYSVGAGHFRSQHTTEVVGGAP  240 (597)
T ss_dssp             CCBTSSEE---ECS-SEEEEEETTHHHHTBEEEEEETTTTBCCBBCCTTCCSCTTCCBTSSEEEECSSCTTSCEEEEEET
T ss_pred             ccCceeeE---ecC-CceEEccccccccccceEEEEccCceeeecccccccccccCcCccEEEEEEECCCCCeEEEEecc
Confidence            34455543   333 47899999988899999999876544432    23457889999999999999999999999999


Q ss_pred             CcCCCCCCCCCccccEEEEEEeCCCccceEEeeeecCCCcCCCcceeEEeeccCCCCCCceeEEcCCCCC-CCCccEEEE
Q psy1434         107 LYTNPTNNVGHYETGRIYVVYQGKETYKFRRLHTRDGKNSKARFGLSLCNLGDINKDGFGDFAVGAPYDG-PNERGVVYI  185 (357)
Q Consensus       107 ~~~~~~~~~~~~~~G~Vyv~~~~~~~~~~~~~~~~~g~~~~~~fG~sva~~gDiN~DG~~Dl~VgaP~~~-~~~~G~Vyi  185 (357)
                      ++..         .|+||||.+..+  .|.....+.|.+.+++||+++++ +|+|+||+.||+||||++. ..+.|+|||
T Consensus       241 ~~~~---------~G~V~v~~~~~~--~~~~~~~l~G~~~g~~fG~sva~-~D~ngDG~~DlvVGap~~~~~~~~G~v~v  308 (597)
T 3v4v_A          241 QHEQ---------IGKAYIFSIDEK--ELNILHEMKGKKLGSYFGASVCA-VDLNADGFSDLLVGAPMQSTIREEGRVFV  308 (597)
T ss_dssp             TGGG---------TCEEEEEEECSS--SEEEEEEEECSSTTCCTTSEEEE-ECTTCSSSCEEEEEETTCCSSSCCCEEEE
T ss_pred             cccC---------CceEEEEecCCC--ceeEEEEecccccCCCCcceEEE-EeeCCCCCceEEEEcccccCCCcCCeEEE
Confidence            9753         699999998754  68777778898999999999994 6999999999999999863 246799999


Q ss_pred             EeCCCCCCC-CCCceEEecceeccccCCCccccceeeeccccCCCCCCCcEEEeecCCCcEEEEccCCCCCCCCCCCeEE
Q psy1434         186 YHGSPIGAR-ENPSQIITAEEVNFGLQGSLTTFGFSLAGGVDLDENQYPDLVIGAYESNTAFVLRSTAPYDGPNERGVVY  264 (357)
Q Consensus       186 y~g~~~g~~-~~~~q~i~~~~~~~g~~~~~~~FG~si~~~~D~d~DG~~Dl~VGa~~~~~v~~~rsrpv~~~~~~~G~v~  264 (357)
                      |.+.+.+.. ....+.|.+.      .....+||.+++..+|+|+||++||+||||.++              ...|+||
T Consensus       309 y~~~g~g~~~~~~~~~l~g~------~~~~~~FG~sva~~gDlngDG~~Dl~VGap~~~--------------~~~G~vy  368 (597)
T 3v4v_A          309 YINSGSGAVMNAMETNLVGS------DKYAARFGESIVNLGDIDNDGFEDVAIGAPQED--------------DLQGAIY  368 (597)
T ss_dssp             EEECSSSSCEECCSSCBCTT------CCTTCCTTSCEECCCCSSCSSSCCEEEEETTHH--------------HHTBEEE
T ss_pred             EEECCCCcceeccceEEeCC------cccccccccccccccccCCCCCcceEEeccccc--------------CCCCcEE
Confidence            998876641 1222333322      224689999999888999999999999997421              2467788


Q ss_pred             EEEcccccccCCCceeeeccccc
Q psy1434         265 IYHGSPIGARENPSQIITAEEVN  287 (357)
Q Consensus       265 ~~~~~~~~~~~~~~q~i~~~~~~  287 (357)
                      ++.++.......++|+|......
T Consensus       369 v~~g~~~g~~~~~sq~i~g~~~~  391 (597)
T 3v4v_A          369 IYNGRADGISSTFSQRIEGLQIS  391 (597)
T ss_dssp             EECEETTEECSSCSEEEEGGGTC
T ss_pred             EecCCCCCccccccEEEeccccc
Confidence            88887766666677888876643

>3vi3_A Integrin alpha-5; beta propeller fold, rossman fold, beta sandwich, fibronecti receptor, cell adhesion-immune system complex; HET: NAG BMA MAN; 2.90A {Homo sapiens} PDB: 3vi4_A*

Probab=99.97  E-value=3e-30  Score=266.15  Aligned_cols=220  Identities=30%  Similarity=0.488  Sum_probs=166.2

Q ss_pred             ceeeEE--EEeecCCCeEEEeecCCCCeeeEEEEEEcCC--------c-------eeeec--cCCccccccceEEEEEEe
Q psy1434          33 MGYSVA--SGFFSGESGVAVGIPRGARLLGKVALYTTNM--------T-------NLQNI--TGEQLGAYFAYAVTTSDV   93 (357)
Q Consensus        33 ~G~sva--~gd~~g~~~~vvGaP~~~~~~G~V~i~~~~~--------~-------~~~~~--~g~~~~s~fG~sva~~D~   93 (357)
                      +|||-+  +++|..+..+++|||+.+.|.|.|+.+....        .       ...+.  ......+|||++|+++|+
T Consensus       161 ~g~~Q~GfSa~~~~d~~~~lGapG~~~W~G~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sy~G~sva~gd~  240 (632)
T 3vi3_A          161 QGYCQGGFSAEFTKTGRVVLGGPGSYFWQGQILSATQEQIAESYYPEYLINLVQGQLQTRQASSIYDDSYLGYSVAVGEF  240 (632)
T ss_dssp             TTTCCTTSEEEECTTCCEEEEETTHHHHTBEEEEECHHHHHHHCCTTSSCCCCTTCEECCCCCGGGCSCCBTSSEEEECC
T ss_pred             cccCcCccceEEcCCCCEEEeCcccccccCcEEEeeccccccccCccccccccCccccccccccccCCCCcccEEEEEEe
Confidence            444433  3555544468999999889999998764210        0       00010  112357999999999999


Q ss_pred             CCCCCceEEEeccCcCCCCCCCCCccccEEEEEEeCCCccceEEeeeecCCCcCCCcceeEEeeccCCCCCCceeEEcCC
Q psy1434          94 DGDGADDLIIGAPLYTNPTNNVGHYETGRIYVVYQGKETYKFRRLHTRDGKNSKARFGLSLCNLGDINKDGFGDFAVGAP  173 (357)
Q Consensus        94 ngDG~~DlvvGaP~~~~~~~~~~~~~~G~Vyv~~~~~~~~~~~~~~~~~g~~~~~~fG~sva~~gDiN~DG~~Dl~VgaP  173 (357)
                      |+||..|||+|||++..        ..|+||||.+...    .....+.|.+.+++||++|++ +|+|+||+.||+||||
T Consensus       241 ngDg~~DlvvGaP~~~~--------~~G~V~v~~~~~~----~~~~~l~G~q~gs~FG~sva~-~D~NgDG~~DLvVGAP  307 (632)
T 3vi3_A          241 SGDDTEDFVAGVPKGNL--------TYGYVTILNGSDI----RSLYNFSGEQMASYFGYAVAA-TDVNGDGLDDLLVGAP  307 (632)
T ss_dssp             SSSSSCEEEEEEEEEET--------TEEEEEEECSSSC----CEEEEEECSSTTSCTTSEEEE-ECCSSSSSCEEEEEET
T ss_pred             cCCCCeEEEEeccccCC--------ccCEEEEEECCCC----cEEEEEecccccCcCcceEEE-EecCCCCccceeeecc
Confidence            99999999999999853        3699999975432    223456788899999999995 7999999999999999


Q ss_pred             CCCC-------CCccEEEEEeCCCCCCCCCCceEEecceeccccCCCccccceeeeccccCCCCCCCcEEEeecCCCcEE
Q psy1434         174 YDGP-------NERGVVYIYHGSPIGARENPSQIITAEEVNFGLQGSLTTFGFSLAGGVDLDENQYPDLVIGAYESNTAF  246 (357)
Q Consensus       174 ~~~~-------~~~G~Vyiy~g~~~g~~~~~~q~i~~~~~~~g~~~~~~~FG~si~~~~D~d~DG~~Dl~VGa~~~~~v~  246 (357)
                      ++..       .+.|+||||+++..+......+.+.+..       ...+||.+++..+|+|+||++||+||||.     
T Consensus       308 ~~~~~~~~g~~~~~G~VyVy~g~~~g~~~~~~~~l~G~~-------~~~~FG~sva~~gDlngDG~~DlaVGap~-----  375 (632)
T 3vi3_A          308 LLMDRTPDGRPQEVGRVYVYLQHPAGIEPTPTLTLTGHD-------EFGRFGSSLTPLGDLDQDGYNDVAIGAPF-----  375 (632)
T ss_dssp             TCEEECTTCCEEECCEEEEECBCSSCBCSSCSEEEECCS-------TTCCGGGEEEEEESSSSSSSCEEEEEETT-----
T ss_pred             cccccccccccccCCEEEEEEcCCCCccccCceEecCcc-------ccCCCceEEEeeeccCCCCCcCEEEeCCc-----
Confidence            7521       2469999999998766555566666432       35899999998889999999999999973     


Q ss_pred             EEccCCCCCCCCCCCeEEEEEcccccccCCCceeeeccc
Q psy1434         247 VLRSTAPYDGPNERGVVYIYHGSPIGARENPSQIITAEE  285 (357)
Q Consensus       247 ~~rsrpv~~~~~~~G~v~~~~~~~~~~~~~~~q~i~~~~  285 (357)
                              ++.+..|+||+++++.......++|+|....
T Consensus       376 --------~~~~~~G~Vyv~~G~~~Gl~~~~sq~i~g~~  406 (632)
T 3vi3_A          376 --------GGETQQGVVFVFPGGPGGLGSKPSQVLQPLW  406 (632)
T ss_dssp             --------CSTTSSCEEEEECEETTEECSSCSEEECCSS
T ss_pred             --------CCcCCCceEEEEecCCCCCCcccceEEecCc
Confidence                    2345688999999887776667778887654

>3t3p_A Integrin alpha-IIB; integrin, cell adhesion, blood clotting, fibrinogen, platele; HET: NAG BMA MAN; 2.20A {Homo sapiens} PDB: 3fcu_A* 3nif_A* 3nid_A* 3t3m_A* 3nig_A* 2vdr_A* 2vc2_A* 2vdk_A* 2vdm_A* 2vdn_A* 2vdl_A* 2vdp_A* 2vdq_A* 2vdo_A* 1txv_A* 1ty3_A* 1ty5_A* 1ty6_A* 1ty7_A* 1tye_A*

Probab=99.96  E-value=1.1e-29  Score=252.60  Aligned_cols=221  Identities=29%  Similarity=0.479  Sum_probs=165.0

Q ss_pred             CCcceeeEE--EEeecCCCeEEEeecCCCCeeeEEEEEEcCC---------------ceeee---ccCCccccccceEEE
Q psy1434          30 GSYMGYSVA--SGFFSGESGVAVGIPRGARLLGKVALYTTNM---------------TNLQN---ITGEQLGAYFAYAVT   89 (357)
Q Consensus        30 ~sy~G~sva--~gd~~g~~~~vvGaP~~~~~~G~V~i~~~~~---------------~~~~~---~~g~~~~s~fG~sva   89 (357)
                      +..+|||-+  +++|..+..+++|||+.+.|.|.|+......               .....   ...+..++||||+|+
T Consensus       161 ~~~~g~~q~GfSa~~~~~~~~~lGapG~~~W~G~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sylGySv~  240 (457)
T 3t3p_A          161 SWDKRYCEAGFSSVVTQAGELVLGAPGGYYFLGLLAQAPVADIFSSYRPGILLWHVSSQSLSFDSSNPEYFDGYWGYSVA  240 (457)
T ss_dssp             TTCCTTCCTTSEEEECTTCEEEEEETTHHHHTCEEEEEEHHHHHHHCCTTCCSBCCTTCEECCCCCCGGGTTCCTTSEEE
T ss_pred             cccccccccccccccccCCCEEEeCCccccCcceEEEeeccccccccCccccceecCCcccccccCCcccCCCcceeEEE
Confidence            344676654  5666644578999999889999998653210               00011   112345799999999


Q ss_pred             EEEeCCCC-CceEEEeccCcCCCCCCCCCccccEEEEEEeCCCccceEEeeeecCCCcCCCcceeEEeeccCCCCCCcee
Q psy1434          90 TSDVDGDG-ADDLIIGAPLYTNPTNNVGHYETGRIYVVYQGKETYKFRRLHTRDGKNSKARFGLSLCNLGDINKDGFGDF  168 (357)
Q Consensus        90 ~~D~ngDG-~~DlvvGaP~~~~~~~~~~~~~~G~Vyv~~~~~~~~~~~~~~~~~g~~~~~~fG~sva~~gDiN~DG~~Dl  168 (357)
                      ++|+|+|| .+++|+|||++..        ..|+||||.  .   .|.....+.|++.+++||++|+ ++|+|+||+.||
T Consensus       241 ~gd~~gdg~~~~~vvGAP~~~~--------~~G~V~i~~--~---~~~~~~~l~G~q~gs~fG~sva-~gDvNgDG~~DL  306 (457)
T 3t3p_A          241 VGEFDGDLNTTEYVVGAPTWSW--------TLGAVEILD--S---YYQRLHRLRGEQMASYFGHSVA-VTDVNGDGRHDL  306 (457)
T ss_dssp             EECCSSCTTSCEEEEEETTHHH--------HTCEEEEEC--T---TCCEEEEEECSSTTSCTTSEEE-EECCSSSSCCEE
T ss_pred             EEEeCCCCceeEEEEcCCCCCC--------ccceEEEEc--C---CCeEEEEecccccCCCCcceEE-EEEeCCCCccce
Confidence            99999996 6689999999842        379999993  2   4666677889999999999999 579999999999


Q ss_pred             EEcCCCCCC-------CCccEEEEEeCCC-CCCCCCCceEEecceeccccCCCccccceeeeccccCCCCCCCcEEEeec
Q psy1434         169 AVGAPYDGP-------NERGVVYIYHGSP-IGARENPSQIITAEEVNFGLQGSLTTFGFSLAGGVDLDENQYPDLVIGAY  240 (357)
Q Consensus       169 ~VgaP~~~~-------~~~G~Vyiy~g~~-~g~~~~~~q~i~~~~~~~g~~~~~~~FG~si~~~~D~d~DG~~Dl~VGa~  240 (357)
                      +||||++..       .+.|+||||.+.. .+.+....+.|.+..       ...+||.+++..+|+|+||++||+||||
T Consensus       307 vVGAP~~~~~~~~~~~~~~G~VyV~~g~~g~~~~~~~~~~l~G~~-------~~~~fG~sva~~gD~ngDG~~Dl~vgap  379 (457)
T 3t3p_A          307 LVGAPLYMESRADRKLAEVGRVYLFLQPRGPHALGAPSLLLTGTQ-------LYGRFGSAIAPLGDLDRDGYNDIAVAAP  379 (457)
T ss_dssp             EEEETTCEEEETTTEEEECCEEEEECCCSSSCCCCSCSEEEECCS-------TTCCTTSEEEEEECSSCSSSCEEEEEET
T ss_pred             eeccccccccccccccCCCCEEEEEecCCCCCccccCceEEeCCc-------CCCCCCceEEeccCCCCCCCcceeEecc
Confidence            999997521       3579999999964 333434445666542       3589999999778999999999999997


Q ss_pred             CCCcEEEEccCCCCCCCCCCCeEEEEEcccccccCCCceeeecc
Q psy1434         241 ESNTAFVLRSTAPYDGPNERGVVYIYHGSPIGARENPSQIITAE  284 (357)
Q Consensus       241 ~~~~v~~~rsrpv~~~~~~~G~v~~~~~~~~~~~~~~~q~i~~~  284 (357)
                      .             .+....|+||++.++.......++|+|...
T Consensus       380 ~-------------~~~~~~G~vyv~~G~~~G~~~~~~q~l~~~  410 (457)
T 3t3p_A          380 Y-------------GGPSGRGQVLVFLGQSEGLRSRPSQVLDSP  410 (457)
T ss_dssp             T-------------CSTTSSCEEEEECEETTEECSSCSEEEECS
T ss_pred             c-------------cCCCCCceEEEEeCCCCCcccCcceEEeCC
Confidence            3             234568899999988776666666777654

>3ije_A Integrin alpha-V; integrin structure, activation, EGF domains, FLIM, cell SIGN cell adhesion, cleavage on PAIR of basic residues; HET: NAG BMA MAN; 2.90A {Homo sapiens} PDB: 4g1e_A* 4g1m_A* 1jv2_A* 1l5g_A* 1m1x_A* 1u8c_A*

Probab=99.96  E-value=1.3e-27  Score=257.43  Aligned_cols=212  Identities=27%  Similarity=0.413  Sum_probs=159.1

Q ss_pred             EeecCCCeEEEeecCCCCeeeEEEEEEcCCc--------e-------eee--ccCCccccccceEEEEEEeCCCCCceEE
Q psy1434          40 GFFSGESGVAVGIPRGARLLGKVALYTTNMT--------N-------LQN--ITGEQLGAYFAYAVTTSDVDGDGADDLI  102 (357)
Q Consensus        40 gd~~g~~~~vvGaP~~~~~~G~V~i~~~~~~--------~-------~~~--~~g~~~~s~fG~sva~~D~ngDG~~Dlv  102 (357)
                      +.+..+..+++|||+.+.|.|.|+.+.....        .       ...  ......++|||++|+++|+|+||..||+
T Consensus       161 a~~~~d~~~~~GapG~~~W~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sy~G~sVa~gD~ngDG~~Dlv  240 (967)
T 3ije_A          161 IDFTKADRVLLGGPGSFYWQGQLISDQVAEIVSKYDPNVYSIKYNNQLATRTAQAIFDDSYLGYSVAVGDFNGDGIDDFV  240 (967)
T ss_dssp             EEECSSSEEEEEETTHHHHTBEEEEEEHHHHHHHCCTTCSSCCCTTCEECCCCCGGGCSCCBTSEEEEECCSSSSSCEEE
T ss_pred             eEeccCCcEEEeCCccccCCCcEEEEeccccccccCccccccccccccccccCCCccCCCccceEEEEEEECCCCCeEEE
Confidence            4454343589999998899999987642110        0       000  1122457999999999999999999999


Q ss_pred             EeccCcCCCCCCCCCccccEEEEEEeCCCccceEEeeeecCCCcCCCcceeEEeeccCCCCCCceeEEcCCCCCC-----
Q psy1434         103 IGAPLYTNPTNNVGHYETGRIYVVYQGKETYKFRRLHTRDGKNSKARFGLSLCNLGDINKDGFGDFAVGAPYDGP-----  177 (357)
Q Consensus       103 vGaP~~~~~~~~~~~~~~G~Vyv~~~~~~~~~~~~~~~~~g~~~~~~fG~sva~~gDiN~DG~~Dl~VgaP~~~~-----  177 (357)
                      +|||++..        ..|+||+|.+.+    |.....+.|.+.+++||++++ ++|+|+||+.||+||||++..     
T Consensus       241 vGaP~~~~--------~~G~V~i~~~~~----~~~~~~~~g~~~gs~fG~sva-~~D~ngDG~~DLvVgaP~~~~~~~~g  307 (967)
T 3ije_A          241 SGVPRAAR--------TLGMVYIYDGKN----MSSLYNFTGEQMAAYFGFSVA-ATDINGDDYADVFIGAPLFMDRGSDG  307 (967)
T ss_dssp             EEETTHHH--------HTCEEEEECSSS----SCEEEEEECSSTTSCTTSEEE-EECTTSSSCCEEEEEETTCEEECTTS
T ss_pred             EEecccCC--------CCcEEEEEeCCC----ceeeeEecccccCCceeEEEE-EEecCCCCCceEEEEccccccccccc
Confidence            99998742        369999986432    445556678888999999999 589999999999999997421     


Q ss_pred             --CCccEEEEEeCCCCCCCCCCceEEecceeccccCCCccccceeeeccccCCCCCCCcEEEeecCCCcEEEEccCCCCC
Q psy1434         178 --NERGVVYIYHGSPIGARENPSQIITAEEVNFGLQGSLTTFGFSLAGGVDLDENQYPDLVIGAYESNTAFVLRSTAPYD  255 (357)
Q Consensus       178 --~~~G~Vyiy~g~~~g~~~~~~q~i~~~~~~~g~~~~~~~FG~si~~~~D~d~DG~~Dl~VGa~~~~~v~~~rsrpv~~  255 (357)
                        .+.|+||||.+++.+.+.  .+.+.+.       ....+||.+++..+|+|+||++||+|||+.             +
T Consensus       308 ~~~~~G~v~vy~~~g~g~f~--~~~l~g~-------~~~~~fG~sva~~gDlngDG~~Dl~VGap~-------------~  365 (967)
T 3ije_A          308 KLQEVGQVSVSLQRASGDFQ--TTKLNGF-------EVFARFGSAIAPLGDLDQDGFNDIAIAAPY-------------G  365 (967)
T ss_dssp             CEEECCEEEEEECCSSSCCE--EEEEECS-------STTSCTTSEEEEEESTTCSSSCEEEEEETT-------------C
T ss_pred             ccccCCcEEEEEECCCCcee--eeeccCc-------cccCCCcceEEeeeccCCCCCcceEEeccc-------------c
Confidence              347999999998765443  3344332       136799999998789999999999999973             3


Q ss_pred             CCCCCCeEEEEEcccccccCCCceeeecccc
Q psy1434         256 GPNERGVVYIYHGSPIGARENPSQIITAEEV  286 (357)
Q Consensus       256 ~~~~~G~v~~~~~~~~~~~~~~~q~i~~~~~  286 (357)
                      +.+..|++|+|++...+....++|+|.....
T Consensus       366 ~~~~~G~vyiy~g~~~G~~~~~sq~i~~~~~  396 (967)
T 3ije_A          366 GEDKKGIVYIFNGRSTGLNAVPSQILEGQWA  396 (967)
T ss_dssp             SSSSCCEEEEEEEETTEECSSCSEEEECCCC
T ss_pred             CCCCCceEEEEecCCCCCcccceeeeccccc
Confidence            4456889999998877666667788876543

>3k6s_A Integrin alpha-X; cell receptor, adhesion molecule, cell adhesion, pyrrolidone carboxylic acid; HET: NAG MAN; 3.50A {Homo sapiens} PDB: 3k71_A* 3k72_A*

Probab=99.95  E-value=5.4e-27  Score=255.72  Aligned_cols=220  Identities=26%  Similarity=0.375  Sum_probs=165.3

Q ss_pred             CcceeeEEEEeecCCCeEEEeecCCCCeeeEEEEEEcCCceee-e---ccCCccccccceEEEEEEeCCCCCceEEEecc
Q psy1434          31 SYMGYSVASGFFSGESGVAVGIPRGARLLGKVALYTTNMTNLQ-N---ITGEQLGAYFAYAVTTSDVDGDGADDLIIGAP  106 (357)
Q Consensus        31 sy~G~sva~gd~~g~~~~vvGaP~~~~~~G~V~i~~~~~~~~~-~---~~g~~~~s~fG~sva~~D~ngDG~~DlvvGaP  106 (357)
                      +-.|+|.+   +.. +..++|||+.+.|.|.|++|+.+...++ .   ..+...++||||+|+++|++  |.++||+|||
T Consensus       333 ~q~GfSa~---~t~-d~~~~GapG~~~w~G~v~~~~~~~~~~~~~~~~~~~~~~~sylGySVa~~~~~--g~~~~v~GAP  406 (1095)
T 3k6s_A          333 AQEGFSAV---FTP-DGPVLGAVGSFTWSGGAFLYPPNMSPTFINMSQENVDMRDSYLGYSTELALWK--GVQSLVLGAP  406 (1095)
T ss_dssp             CCTTSSEE---CCT-TCCEEEESCSTTTTBEEEECCSSSCCEEECCCSSCCCCCSCCBTSSEECCCCS--SSCEEEEEET
T ss_pred             ccccccce---ecC-CcceEcccccCCccceeEEecCCCcceeeccccccccccccccceeeEEeccC--CceEEEEEcc
Confidence            34466643   332 2338899999999999999986544332 1   23456789999999999875  4678999999


Q ss_pred             CcCCCCCCCCCccccEEEEEEeCCCccceEEeeeecCCCcCCCcceeEEeeccCCCCCCcee-EEcCCCCC-CCCccEEE
Q psy1434         107 LYTNPTNNVGHYETGRIYVVYQGKETYKFRRLHTRDGKNSKARFGLSLCNLGDINKDGFGDF-AVGAPYDG-PNERGVVY  184 (357)
Q Consensus       107 ~~~~~~~~~~~~~~G~Vyv~~~~~~~~~~~~~~~~~g~~~~~~fG~sva~~gDiN~DG~~Dl-~VgaP~~~-~~~~G~Vy  184 (357)
                      ++..         .|+||||.+..  ..|.....+.|.+.+++||++|+ ++|+|+||+.|| +||||.+. ....|+||
T Consensus       407 ~~~~---------~G~V~i~~~~~--~~~~~~~~~~g~~~gs~fG~sva-~~DvngDG~~DllvvGAP~~~~~~~~G~Vy  474 (1095)
T 3k6s_A          407 RYQH---------TGKAVIFTQVS--RQWRMKAEVTGTQIGSYFGASLC-SVDVDSDGSTDLVLIGAPHYYEQTRGGQVS  474 (1095)
T ss_dssp             TGGG---------TCEEEEEECCT--TTCCEEEEECCSSTTSCTTSCEE-EECSSSSSSCCEEEEECSSCCSSCCCBCEE
T ss_pred             cccc---------cceEEEEEecC--CcceEEeecccCcccCcCCceEE-EEEeCCCCCccEEEECCccccCcCCCCEEE
Confidence            9753         79999999874  36877778889999999999999 579999999999 89999752 25689999


Q ss_pred             EEeCCCCCCCCCCceEEecceeccccCCCccccceeeeccccCCCCCCCcEEEeecCCCcEEEEccCCCCCCCCCCCeEE
Q psy1434         185 IYHGSPIGARENPSQIITAEEVNFGLQGSLTTFGFSLAGGVDLDENQYPDLVIGAYESNTAFVLRSTAPYDGPNERGVVY  264 (357)
Q Consensus       185 iy~g~~~g~~~~~~q~i~~~~~~~g~~~~~~~FG~si~~~~D~d~DG~~Dl~VGa~~~~~v~~~rsrpv~~~~~~~G~v~  264 (357)
                      ||.++..+......+.+.+...     ....+||.+++..+|+|+||++||+||||.+              ....|+||
T Consensus       475 vy~~~~~~~~~~~~~~l~g~~~-----~~~~~FG~sva~~gD~NgDG~~Dl~VGAP~~--------------~~~~G~vy  535 (1095)
T 3k6s_A          475 VCPLPRGWRRWWCDAVLYGEQG-----HPWGRFGAALTVLGDVNGDKLTDVVIGAPGE--------------EENRGAVY  535 (1095)
T ss_dssp             EEECCSSTTCCCSCSSCCCCCS-----CSSCCBTSCEEEEECSSSSSCCEEEEECTTT--------------TTSCCBEE
T ss_pred             EEEeCCCCcceeeeEEeecccC-----CccccCccceEeecccCCCCCcCEEEeCCcC--------------CCCCCEEE
Confidence            9998765322122233333221     1368999999988899999999999999742              34689999


Q ss_pred             EEEcccc-cccCCCceeeeccccc
Q psy1434         265 IYHGSPI-GARENPSQIITAEEVN  287 (357)
Q Consensus       265 ~~~~~~~-~~~~~~~q~i~~~~~~  287 (357)
                      +|.+... .....++|+|......
T Consensus       536 i~~g~~~~g~~~~~~q~l~~~~~~  559 (1095)
T 3k6s_A          536 LFHGVLGPSISPSHSQRIAGSQLS  559 (1095)
T ss_dssp             EEEBCSSSCBCSSCSBCCBTTSSC
T ss_pred             EecCCCCCCccccceEEeecCCCC
Confidence            9999865 5555566777766544

>3fcs_A Integrin, alpha 2B; beta propeller, rossmann fold, EGF domain, cell adhesion, DI mutation, glycoprotein, HOST-virus interaction, M phosphoprotein; HET: NAG MAN; 2.55A {Homo sapiens}

Probab=99.95  E-value=5.3e-28  Score=259.63  Aligned_cols=221  Identities=29%  Similarity=0.471  Sum_probs=163.8

Q ss_pred             CCcceeeEE--EEeecCCCeEEEeecCCCCeeeEEEEEEcCC---------------ceee---eccCCccccccceEEE
Q psy1434          30 GSYMGYSVA--SGFFSGESGVAVGIPRGARLLGKVALYTTNM---------------TNLQ---NITGEQLGAYFAYAVT   89 (357)
Q Consensus        30 ~sy~G~sva--~gd~~g~~~~vvGaP~~~~~~G~V~i~~~~~---------------~~~~---~~~g~~~~s~fG~sva   89 (357)
                      +..+|||-+  ++.|..+..+++|||+++.|.|.|+.+....               ...+   ....+..++|||++|+
T Consensus       161 ~~~~g~~Q~GfSa~~t~d~~~~lGApGa~~W~G~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sy~G~sva  240 (959)
T 3fcs_A          161 SWDKRYCEAGFSSVVTQAGELVLGAPGGYYFLGLLAQAPVADIFSSYRPGILLWHVSSQSLSFDSSNPEYFDGYWGYSVA  240 (959)
T ss_dssp             TTCCTTCCBTSEEEECTTCEEEEEETTHHHHTCEEEEEEHHHHHHHCCTTCCSCCCTTCEECCCCCCGGGTTCCTTSEEE
T ss_pred             ccccccccCCcceEEcCCCCEEEeCCcccCCCcEEEEeecccccccccccccccccCccccccccCCcccCCCccccEEE
Confidence            344667654  5566644458999999989999998764210               0001   1122456899999999


Q ss_pred             EEEeCCCCCc-eEEEeccCcCCCCCCCCCccccEEEEEEeCCCccceEEeeeecCCCcCCCcceeEEeeccCCCCCCcee
Q psy1434          90 TSDVDGDGAD-DLIIGAPLYTNPTNNVGHYETGRIYVVYQGKETYKFRRLHTRDGKNSKARFGLSLCNLGDINKDGFGDF  168 (357)
Q Consensus        90 ~~D~ngDG~~-DlvvGaP~~~~~~~~~~~~~~G~Vyv~~~~~~~~~~~~~~~~~g~~~~~~fG~sva~~gDiN~DG~~Dl  168 (357)
                      ++|+|+||.. |+++|||++..        ..|+||||.     ..|.....+.|.+.+++||++++ +||+|+||+.||
T Consensus       241 ~gD~~gDG~~d~~vvGaPr~~~--------~~G~V~i~~-----~~~~~~~~l~G~q~gs~fG~sva-~gD~NgDG~~DL  306 (959)
T 3fcs_A          241 VGEFDGDLNTTEYVVGAPTWSW--------TLGAVEILD-----SYYQRLHRLRGEQMASYFGHSVA-VTDVNGDGRHDL  306 (959)
T ss_dssp             EECCSSCSSSCEEEEEETTHHH--------HTCEEEEEC-----TTCCEEEEEECSSTTSCTTSEEE-EECCSSSSSCEE
T ss_pred             EEEECCCCCeeEEEEECCcccC--------CcceEEEEC-----CCceEEEEeccccCCCCceeEEE-EEEecCCCccce
Confidence            9999999987 78999998742        369999963     24666677889999999999999 589999999999


Q ss_pred             EEcCCCCCC-------CCccEEEEEeCCCC-CCCCCCceEEecceeccccCCCccccceeeeccccCCCCCCCcEEEeec
Q psy1434         169 AVGAPYDGP-------NERGVVYIYHGSPI-GARENPSQIITAEEVNFGLQGSLTTFGFSLAGGVDLDENQYPDLVIGAY  240 (357)
Q Consensus       169 ~VgaP~~~~-------~~~G~Vyiy~g~~~-g~~~~~~q~i~~~~~~~g~~~~~~~FG~si~~~~D~d~DG~~Dl~VGa~  240 (357)
                      +||||++..       .+.|+||||.+... +.+....+.+.+..       ...+||.+++..+|+|+||++||+||||
T Consensus       307 vVGAP~~~~~~~~~~~~~~G~VyV~~~~~g~~~~~~~~~~l~G~~-------~~~~FG~sva~~gD~ngDG~~Dl~Vgap  379 (959)
T 3fcs_A          307 LVGAPLYMESRADRKLAEVGRVYLFLQPRGPHALGAPSLLLTGTQ-------LYGRFGSAIAPLGDLDRDGYNDIAVAAP  379 (959)
T ss_dssp             EEEETTCEEEETTEEEEECBEEEEECCCSTTCCCCSCSEEEECCS-------TTCCBTSEEEEEECSSCSSSCEEEEEET
T ss_pred             eEeccccccccccccccCCceEEEEecCCCCCcccccceEEeccc-------CCCCCceeEEeeecCCCCCCcceEEecc
Confidence            999997531       25799999998643 23333445565442       3579999999778999999999999997


Q ss_pred             CCCcEEEEccCCCCCCCCCCCeEEEEEcccccccCCCceeeecc
Q psy1434         241 ESNTAFVLRSTAPYDGPNERGVVYIYHGSPIGARENPSQIITAE  284 (357)
Q Consensus       241 ~~~~v~~~rsrpv~~~~~~~G~v~~~~~~~~~~~~~~~q~i~~~  284 (357)
                      .             ++.+..|+||+|.++..+....++|.|...
T Consensus       380 ~-------------~~~~~~G~Vyvy~g~~~g~~~~~~q~~~~~  410 (959)
T 3fcs_A          380 Y-------------GGPSGRGQVLVFLGQSEGLRSRPSQVLDSP  410 (959)
T ss_dssp             T-------------CSTTSSCEEEEECEETTEECSSCSEEEECC
T ss_pred             c-------------CCCCCCceEEEEecCCCCcccccceeeccC
Confidence            3             234567888888887766665666777643

>2bwr_A Psathyrella velutina lectin; N-acetyl-glucosamine; HET: MES; 1.5A {Psathyrella velutina} PDB: 2bwm_A* 2c25_A* 2c4d_A*

Probab=99.42  E-value=2.2e-12  Score=126.46  Aligned_cols=213  Identities=13%  Similarity=0.044  Sum_probs=121.3

Q ss_pred             cceEEEEecCCCCceEEeecCCCC--CCC--CcceeeEEEEeec--CCCeEEEeecCCCCeeeEEEEEEcCCcee----e
Q psy1434           4 SGQVISQNLYDRPEFKATKEGPPT--DDG--SYMGYSVASGFFS--GESGVAVGIPRGARLLGKVALYTTNMTNL----Q   73 (357)
Q Consensus         4 ~g~~~~~~~~~~~~~~~~~~~~~~--~~~--sy~G~sva~gd~~--g~~~~vvGaP~~~~~~G~V~i~~~~~~~~----~   73 (357)
                      .+.+++|..++...|.........  ...  .....+++.+|++  |..||++..      .+.+.+|.++....    .
T Consensus       136 ~~~~~~~~n~g~g~f~~~~~~~~~~~~~~gw~~~~~~~~~~D~dgDG~~Dl~~~~------~~~~~~~~n~g~g~f~~~~  209 (401)
T 2bwr_A          136 DGGIYISRNNGGGQFAPAQLALNNFGYAQGWRLDRHLRFLADVTGDGLLDVVGFG------ENQVYIARNSGNGTFQPAQ  209 (401)
T ss_dssp             SSSEEEECBCSTTCBCCCEEEESCSSGGGTCCTTTCEEEEECSSSSSCCEEEEEC------SSCEEEECBCSSSCBCCCE
T ss_pred             CCCEEEEEeCCCCccccccccccCccccCccccCCcceEEEEcCCCCCccEEEEC------CCcEEEEEeCCCCceecce
Confidence            456777766554444332211000  000  1235678899999  788988632      25678887543211    1


Q ss_pred             ecc-CCccc----cccceEEEEEEeCCCCCceEEEeccCcCCCCCCCCCccccEEEEEEeCCCccceEEeeeecC-CCc-
Q psy1434          74 NIT-GEQLG----AYFAYAVTTSDVDGDGADDLIIGAPLYTNPTNNVGHYETGRIYVVYQGKETYKFRRLHTRDG-KNS-  146 (357)
Q Consensus        74 ~~~-g~~~~----s~fG~sva~~D~ngDG~~DlvvGaP~~~~~~~~~~~~~~G~Vyv~~~~~~~~~~~~~~~~~g-~~~-  146 (357)
                      .+. ....+    ...+..++++|+|+||+.||++..              .+.+++|.+.+. +.|.....+.. ... 
T Consensus       210 ~~~~~~~~~~~g~~~~~~~~~~~D~dgDG~~Dlv~~~--------------~~~~~~~~n~g~-g~f~~~~~~~~~~~~~  274 (401)
T 2bwr_A          210 AVVNNFCIGAGGWTISAHPRVVADLTGDRKADILGFG--------------VAGVYTSLNNGN-GTFGAVNLVLKDFGVN  274 (401)
T ss_dssp             EEESCSBTTBSCCCTTTCCEEEECSSSSSCCEEEEEC--------------SSSEEEECBCSS-SCBCCCEEEESCSSGG
T ss_pred             eeccccccCcCCcccCCcceeeeEcCCCCCccEEEEC--------------CCcEEEEEeCCC-ccccCceecccCcccC
Confidence            111 11011    112566889999999999999743              134788888766 45654332211 100 


Q ss_pred             CC--CcceeEEeeccCCCCCCceeEEcCCCCCCCCccEEEEEeCCCCCCCCCCceEEecceeccccCCCccccceeeecc
Q psy1434         147 KA--RFGLSLCNLGDINKDGFGDFAVGAPYDGPNERGVVYIYHGSPIGARENPSQIITAEEVNFGLQGSLTTFGFSLAGG  224 (357)
Q Consensus       147 ~~--~fG~sva~~gDiN~DG~~Dl~VgaP~~~~~~~G~Vyiy~g~~~g~~~~~~q~i~~~~~~~g~~~~~~~FG~si~~~  224 (357)
                      .+  .....++ ++|+|+||..||++..       .+.+++|.+.+.+.+..............    ....+..+++. 
T Consensus       275 ~gw~~~~~~~~-~~D~dgDG~~Dlv~~~-------~~~~~~~~n~g~g~f~~~~~~~~~~~~~~----g~~~~~~~~~~-  341 (401)
T 2bwr_A          275 SGWRVEKHVRC-VSSLTNKKVGDIIGFG-------DAGVYVALNNGNGTFGPVKRVIDNFGYNQ----GWRVDKHPRFV-  341 (401)
T ss_dssp             GTCCTTTCEEE-EECCSTTCSCEEEEEC-------SSSEEEECBCSSSCBCCCEEEESCSSGGG----TCCTTTCCEEE-
T ss_pred             CcccccCccce-eEeCCCCCCccEEEEc-------CCeEEEEecCCCccccCcceeccccccCC----Ccccccceeee-
Confidence            01  1223444 6799999999999842       35799999988776544332221101110    11222344443 


Q ss_pred             ccCCCCCCCcEEEeecCCCcEEEEccCC
Q psy1434         225 VDLDENQYPDLVIGAYESNTAFVLRSTA  252 (357)
Q Consensus       225 ~D~d~DG~~Dl~VGa~~~~~v~~~rsrp  252 (357)
                      .|+|+||.+||++..  .+.+.+|+.+.
T Consensus       342 ~D~dgDG~~Dlv~~~--~~~~~~~~n~g  367 (401)
T 2bwr_A          342 VDLTGDGCADIVGFG--ENSVWACMNKG  367 (401)
T ss_dssp             ECSSSSSSCEEEEEC--SSCEEEEEECS
T ss_pred             EccCCCCCccEEEEC--CCcEEEEEeCC
Confidence            599999999999854  67888887653

>2bwr_A Psathyrella velutina lectin; N-acetyl-glucosamine; HET: MES; 1.5A {Psathyrella velutina} PDB: 2bwm_A* 2c25_A* 2c4d_A*

Probab=99.39  E-value=7.7e-12  Score=122.56  Aligned_cols=182  Identities=12%  Similarity=0.026  Sum_probs=108.8

Q ss_pred             eeEEEEeec--CCCeEEEeecCCCCeeeEEEEEEcCCcee----eeccCC-ccc---cccceEEEEEEeCCCCCceEEEe
Q psy1434          35 YSVASGFFS--GESGVAVGIPRGARLLGKVALYTTNMTNL----QNITGE-QLG---AYFAYAVTTSDVDGDGADDLIIG  104 (357)
Q Consensus        35 ~sva~gd~~--g~~~~vvGaP~~~~~~G~V~i~~~~~~~~----~~~~g~-~~~---s~fG~sva~~D~ngDG~~DlvvG  104 (357)
                      .+++.+|++  |..||+.-      ..+.+.+|.++....    ...... ...   .....+++++|+|+||+.||++.
T Consensus       116 ~~~~~~D~dgDG~~Dl~~~------~~~~~~~~~n~g~g~f~~~~~~~~~~~~~~gw~~~~~~~~~~D~dgDG~~Dl~~~  189 (401)
T 2bwr_A          116 HIRFMADLRKTGRADIVGF------GDGGIYISRNNGGGQFAPAQLALNNFGYAQGWRLDRHLRFLADVTGDGLLDVVGF  189 (401)
T ss_dssp             CEEEEECCSSSSSCEEEEE------CSSSEEEECBCSTTCBCCCEEEESCSSGGGTCCTTTCEEEEECSSSSSCCEEEEE
T ss_pred             ceeEeecCCCCCCcCEEEE------CCCCEEEEEeCCCCccccccccccCccccCccccCCcceEEEEcCCCCCccEEEE
Confidence            478899999  78898842      134577887643211    111110 001   12457789999999999999974


Q ss_pred             ccCcCCCCCCCCCccccEEEEEEeCCCccceEEeeeec-CC----CcCCCcceeEEeeccCCCCCCceeEEcCCCCCCCC
Q psy1434         105 APLYTNPTNNVGHYETGRIYVVYQGKETYKFRRLHTRD-GK----NSKARFGLSLCNLGDINKDGFGDFAVGAPYDGPNE  179 (357)
Q Consensus       105 aP~~~~~~~~~~~~~~G~Vyv~~~~~~~~~~~~~~~~~-g~----~~~~~fG~sva~~gDiN~DG~~Dl~VgaP~~~~~~  179 (357)
                      .              .+.+++|.+.+. +.|.....+. ..    ......+..++ ++|+|+||..||++..       
T Consensus       190 ~--------------~~~~~~~~n~g~-g~f~~~~~~~~~~~~~~~g~~~~~~~~~-~~D~dgDG~~Dlv~~~-------  246 (401)
T 2bwr_A          190 G--------------ENQVYIARNSGN-GTFQPAQAVVNNFCIGAGGWTISAHPRV-VADLTGDRKADILGFG-------  246 (401)
T ss_dssp             C--------------SSCEEEECBCSS-SCBCCCEEEESCSBTTBSCCCTTTCCEE-EECSSSSSCCEEEEEC-------
T ss_pred             C--------------CCcEEEEEeCCC-CceecceeeccccccCcCCcccCCccee-eeEcCCCCCccEEEEC-------
Confidence            2              246889988765 4565433221 11    11111233444 6799999999999743       


Q ss_pred             ccEEEEEeCCCCCCCCCCceEEecceeccccCCCccccceeeeccccCCCCCCCcEEEeecCCCcEEEEccCC
Q psy1434         180 RGVVYIYHGSPIGARENPSQIITAEEVNFGLQGSLTTFGFSLAGGVDLDENQYPDLVIGAYESNTAFVLRSTA  252 (357)
Q Consensus       180 ~G~Vyiy~g~~~g~~~~~~q~i~~~~~~~g~~~~~~~FG~si~~~~D~d~DG~~Dl~VGa~~~~~v~~~rsrp  252 (357)
                      .+.+++|.+.+.+.+..+. .+... ..  ..........++. ..|+|+||.+||++..  .+.+.+|+...
T Consensus       247 ~~~~~~~~n~g~g~f~~~~-~~~~~-~~--~~~gw~~~~~~~~-~~D~dgDG~~Dlv~~~--~~~~~~~~n~g  312 (401)
T 2bwr_A          247 VAGVYTSLNNGNGTFGAVN-LVLKD-FG--VNSGWRVEKHVRC-VSSLTNKKVGDIIGFG--DAGVYVALNNG  312 (401)
T ss_dssp             SSSEEEECBCSSSCBCCCE-EEESC-SS--GGGTCCTTTCEEE-EECCSTTCSCEEEEEC--SSSEEEECBCS
T ss_pred             CCcEEEEEeCCCccccCce-ecccC-cc--cCCcccccCccce-eEeCCCCCCccEEEEc--CCeEEEEecCC
Confidence            2458999988776554332 22211 10  0001111233343 4699999999999953  57788887653

>4a7k_A Aldos-2-ulose dehydratase; lyase, dehydratase/isomerase, lignin degradation, cortalcerone/microthecin forming, metalloenzyme; 2.00A {Phanerochaete chrysosporium} PDB: 4a7y_A* 4a7z_A*

Probab=99.30  E-value=9.6e-11  Score=121.02  Aligned_cols=214  Identities=14%  Similarity=0.200  Sum_probs=130.8

Q ss_pred             cceEEEEecCCCCc--eEEeecCCCCCCCCcceeeEEEEeec--CCCeEEEeecC----CCCeeeEEEEEEcCCc-----
Q psy1434           4 SGQVISQNLYDRPE--FKATKEGPPTDDGSYMGYSVASGFFS--GESGVAVGIPR----GARLLGKVALYTTNMT-----   70 (357)
Q Consensus         4 ~g~~~~~~~~~~~~--~~~~~~~~~~~~~sy~G~sva~gd~~--g~~~~vvGaP~----~~~~~G~V~i~~~~~~-----   70 (357)
                      .|.++.|.+.+...  |....-..     .-.-.++.++|++  |..+||++...    .....+++++|.....     
T Consensus       127 gG~V~W~ENpGd~t~~Wk~h~Is~-----~pgvHrv~agDLDGDGrlDLIvAsl~g~KeGws~p~kL~~fe~P~Dp~~~~  201 (900)
T 4a7k_A          127 GGRVSWLENPGELRDNWTMRTIGH-----SPGMHRLKAGHFTRTDRVQVVAVPIVVASSDLTTPADVIIFTAPDDPRSEQ  201 (900)
T ss_dssp             CCEEEEECCCSSSCSSCCEEEEEE-----CTTEEEEEEECSSCSSSCEEEEEESCSSTTCCSSCEEEEEEECCSCTTSSC
T ss_pred             CcEEEEEecCCCCCCCceEEEecC-----CCceEEEEEEEECCCCCEEEEEEeccccCcCcCCCceEEEEECCCCccccc
Confidence            56677787655432  21111111     1112468889998  78888876531    1234567888874321     


Q ss_pred             eee--eccCCccccccceEEE-EEEeCCC-CCceEEEeccCcCCCCCCCCCccccEEEEEEeCCCccceEEeeeecCCC-
Q psy1434          71 NLQ--NITGEQLGAYFAYAVT-TSDVDGD-GADDLIIGAPLYTNPTNNVGHYETGRIYVVYQGKETYKFRRLHTRDGKN-  145 (357)
Q Consensus        71 ~~~--~~~g~~~~s~fG~sva-~~D~ngD-G~~DlvvGaP~~~~~~~~~~~~~~G~Vyv~~~~~~~~~~~~~~~~~g~~-  145 (357)
                      .|.  .+. .+ .-..|+.++ ++|+|+| |.+||++++             ..|..++++ .++  .|.......|.. 
T Consensus       202 eWk~~VIs-d~-~~~HGl~v~~aGDINGD~G~dDILVAS-------------kEGV~wf~~-~dG--~Wk~~~Ig~G~as  263 (900)
T 4a7k_A          202 LWQRDVVG-TR-HLVHEVAIVPAAETDGEMRFDQIILAG-------------RDGVDCLWY-DGA--RWQRHLVGTGLPE  263 (900)
T ss_dssp             SCEEEEEE-EE-SSCCEEEEECGGGGTTSCSSCEEEEEE-------------TTEEEEEEE-CSS--CEEEEEEECCBCC
T ss_pred             CceEEEec-CC-CcceeeEEeccccccCCCCCceEEEEc-------------CCCcEEEEe-CCC--CcEEEEccCCCcc
Confidence            221  222 12 233455544 6799999 999999986             245454444 333  576655434421 


Q ss_pred             --cCCCcceeEEeeccCCCCCCceeEEcCCCCCCCCccEEEEEeCCCCCCC----CCCce-EEecceecccc-CCCcccc
Q psy1434         146 --SKARFGLSLCNLGDINKDGFGDFAVGAPYDGPNERGVVYIYHGSPIGAR----ENPSQ-IITAEEVNFGL-QGSLTTF  217 (357)
Q Consensus       146 --~~~~fG~sva~~gDiN~DG~~Dl~VgaP~~~~~~~G~Vyiy~g~~~g~~----~~~~q-~i~~~~~~~g~-~~~~~~F  217 (357)
                        ....-|.+-+.+||||+||+.+|++..|+.    .+.|.||.+...+..    ..+.+ +|...    |. .+....|
T Consensus       264 ~~~~d~~GagDIavGDLdGDG~deIaTIEPfH----Gd~VaVYt~~~ggp~g~~~~~WkrhVId~~----g~~~e~~~~f  335 (900)
T 4a7k_A          264 ERGDPYWGAGSAAVGRVGDDYAGYICSAEAFH----GNTVSVYTKPAGSPTGIVRAEWTRHVLDVF----GPLNGKHTGS  335 (900)
T ss_dssp             CTTCCCCBCSEEEEEEETTEEEEEEEEEESTT----CSEEEEEECCTTCCSSSTTSCCEEEEEEEC----CCCCTTSCCS
T ss_pred             ccccCCCCccceEEEEcCCCCceeEEEecCCc----CCEEEEEECCCCCccccccccceeeeeccc----CcccccccCC
Confidence              112235554557899999999999998875    368999999876521    12333 23221    11 1235679


Q ss_pred             ceeeeccccCCCCCCCcEEEeecCCCc-------EEEEc
Q psy1434         218 GFSLAGGVDLDENQYPDLVIGAYESNT-------AFVLR  249 (357)
Q Consensus       218 G~si~~~~D~d~DG~~Dl~VGa~~~~~-------v~~~r  249 (357)
                      |.+|+.+ |||+||++||++|....+.       +++|+
T Consensus       336 gHaL~~g-DldGDG~~DIVvG~R~~~~~D~~~~gL~~Y~  373 (900)
T 4a7k_A          336 IHQVVCA-DIDGDGEDEFLVAMMGADPPDFQRTGVWCYK  373 (900)
T ss_dssp             EEEEEEE-CTTSSSBCEEEEEEECCSSCCGGGEEEEEEE
T ss_pred             ceeEEEE-ecCCCCcccEEEEecCCCCccCCcceEEEEE
Confidence            9999875 9999999999999987763       77766

>4a7k_A Aldos-2-ulose dehydratase; lyase, dehydratase/isomerase, lignin degradation, cortalcerone/microthecin forming, metalloenzyme; 2.00A {Phanerochaete chrysosporium} PDB: 4a7y_A* 4a7z_A*

Probab=99.18  E-value=3.2e-10  Score=117.19  Aligned_cols=189  Identities=12%  Similarity=0.061  Sum_probs=111.6

Q ss_pred             CcceeeEEEEee--c--CCCeEEEeecCCC-C-----eeeEEEEEEcCCce-e--eeccCCccccccceEEEEEEeCCCC
Q psy1434          31 SYMGYSVASGFF--S--GESGVAVGIPRGA-R-----LLGKVALYTTNMTN-L--QNITGEQLGAYFAYAVTTSDVDGDG   97 (357)
Q Consensus        31 sy~G~sva~gd~--~--g~~~~vvGaP~~~-~-----~~G~V~i~~~~~~~-~--~~~~g~~~~s~fG~sva~~D~ngDG   97 (357)
                      ...+|+|.++|+  +  |..||++.+-+.. .     ..+.|++|+++... +  +.+.    ......++.++|||+||
T Consensus        31 ~~~~~sV~aaDL~~DGDG~lDVLv~g~~s~d~~~d~~~~~~V~WYeN~G~gtFs~~vI~----~~~~pvsV~aaDLDGDG  106 (900)
T 4a7k_A           31 RPDGYWVEAFPFRSDSSKCPNIIGYGLGTYDMKSDIQMLVNPYATTNNQSSSWTPVPLA----KLDFPVAMHYADITKNG  106 (900)
T ss_dssp             CSCBCEEEEECSBTTCCSSCEEEEECCCCSSCCEEEEEEECTTSSTTCCCCCCEEEEEE----EESSCCCEEEECTTCSS
T ss_pred             CCCcceEEEeccCcCCCCCccEEeeccccccccccccccceEEEEECCCCCCCcceEec----cCCCceeeEEEeeCCCC
Confidence            345789999999  7  8889885433221 1     23467778764332 1  1221    11123678899999999


Q ss_pred             CceEEEeccCcCCCCCCCCCccccEEEEEEeCCCc-cceEEeeeecCCCcCCCcceeEEeeccCCCCCCceeEEcCCCCC
Q psy1434          98 ADDLIIGAPLYTNPTNNVGHYETGRIYVVYQGKET-YKFRRLHTRDGKNSKARFGLSLCNLGDINKDGFGDFAVGAPYDG  176 (357)
Q Consensus        98 ~~DlvvGaP~~~~~~~~~~~~~~G~Vyv~~~~~~~-~~~~~~~~~~g~~~~~~fG~sva~~gDiN~DG~~Dl~VgaP~~~  176 (357)
                      ..||++++......  .+.....|+|++|.+.+.. ..|....+..      ..+..-..++|+|+||..|||++..+..
T Consensus       107 dlDVVvas~fg~t~--dd~n~~gG~V~W~ENpGd~t~~Wk~h~Is~------~pgvHrv~agDLDGDGrlDLIvAsl~g~  178 (900)
T 4a7k_A          107 FNDVIITDQYGSSM--DDIWAYGGRVSWLENPGELRDNWTMRTIGH------SPGMHRLKAGHFTRTDRVQVVAVPIVVA  178 (900)
T ss_dssp             BCEEEEEECCEEET--TEECTTCCEEEEECCCSSSCSSCCEEEEEE------CTTEEEEEEECSSCSSSCEEEEEESCSS
T ss_pred             CccEEEecccCccc--cccccCCcEEEEEecCCCCCCCceEEEecC------CCceEEEEEEEECCCCCEEEEEEecccc
Confidence            99999987532110  0001136899999987652 2454433211      1122223367999999999999764321


Q ss_pred             ---CCCccEEEEEeCCCCCC-CCCCc-eEEecceeccccCCCccccceeeeccccCCCC-CCCcEEEeec
Q psy1434         177 ---PNERGVVYIYHGSPIGA-RENPS-QIITAEEVNFGLQGSLTTFGFSLAGGVDLDEN-QYPDLVIGAY  240 (357)
Q Consensus       177 ---~~~~G~Vyiy~g~~~g~-~~~~~-q~i~~~~~~~g~~~~~~~FG~si~~~~D~d~D-G~~Dl~VGa~  240 (357)
                         ....+.+|+|....... ...+. ..|..         .....|......+|+|+| |+.||++++-
T Consensus       179 KeGws~p~kL~~fe~P~Dp~~~~eWk~~VIsd---------~~~~HGl~v~~aGDINGD~G~dDILVASk  239 (900)
T 4a7k_A          179 SSDLTTPADVIIFTAPDDPRSEQLWQRDVVGT---------RHLVHEVAIVPAAETDGEMRFDQIILAGR  239 (900)
T ss_dssp             TTCCSSCEEEEEEECCSCTTSSCSCEEEEEEE---------ESSCCEEEEECGGGGTTSCSSCEEEEEET
T ss_pred             CcCcCCCceEEEEECCCCcccccCceEEEecC---------CCcceeeEEeccccccCCCCCceEEEEcC
Confidence               12456788887644321 11122 22221         123445555545799999 9999999984

>2zux_A YESW protein; beta-propeller, lyase, rhamnose complex; HET: RAM; 1.32A {Bacillus subtilis} PDB: 2z8s_A* 2z8r_A*

Probab=97.96  E-value=0.00015  Score=72.98  Aligned_cols=190  Identities=17%  Similarity=0.237  Sum_probs=95.8

Q ss_pred             eEEEEeec--CCCeEEEee-cC---CCC---ee--eEEEEEEcCCceeeecc-CCc--cccccceEEEEEEeCCCCCceE
Q psy1434          36 SVASGFFS--GESGVAVGI-PR---GAR---LL--GKVALYTTNMTNLQNIT-GEQ--LGAYFAYAVTTSDVDGDGADDL  101 (357)
Q Consensus        36 sva~gd~~--g~~~~vvGa-P~---~~~---~~--G~V~i~~~~~~~~~~~~-g~~--~~s~fG~sva~~D~ngDG~~Dl  101 (357)
                      .+++||++  |..++|+-. |.   ...   .+  ..+..|+.+++.++.+. +..  .+..+ .++.+.|||+||+.+|
T Consensus       116 d~sVgDLDGDG~~EiVv~~dp~n~~d~s~~g~tg~~~l~aY~ldG~~LW~idlg~ni~aGa~y-t~~~V~DlDGDGkaEI  194 (591)
T 2zux_A          116 DASVGDVDGDGQYELILKWDPSNSKDNSQDGYTGDVLIDAYKLDGTKLWRINLGKNIRAGAHY-TQFMVYDLDGDGKAEV  194 (591)
T ss_dssp             EEEEECSSSSSSCEEEEEEEETTCCCTTCCSCCCCCEEEEECTTSCEEEEEECCTTSCCSTTS-CCCEEECSSSSSSCEE
T ss_pred             CCeEEecCCCCCEEEEEEECCcccccccccCcCCCcEEEEEECCCCEEEEEcCCCCccccccc-CceeEEEcCCCCcceE
Confidence            36789998  777877754 32   111   12  25667777666554332 222  22222 3678899999999999


Q ss_pred             EEeccCcC-CCCC------------CCCCcccc--EEEEEEeCCCccceEEeeee--cCC------CcCCCcceeEEeec
Q psy1434         102 IIGAPLYT-NPTN------------NVGHYETG--RIYVVYQGKETYKFRRLHTR--DGK------NSKARFGLSLCNLG  158 (357)
Q Consensus       102 vvGaP~~~-~~~~------------~~~~~~~G--~Vyv~~~~~~~~~~~~~~~~--~g~------~~~~~fG~sva~~g  158 (357)
                      ++.+-... +...            ..+.-..|  -++||.+..+ ..+......  .|.      ..+.|...-++.++
T Consensus       195 vv~TadGt~dg~g~~ig~~~~dyrn~~g~il~GpEyL~vfdG~TG-~~l~~~~~~p~rg~~~~WGD~ygnR~drf~~~va  273 (591)
T 2zux_A          195 AMKTADGTKDGTGKVIGNANADYRNEQGRVLSGPEYLTVFQGSTG-KELVTANFEPARGNVSDWGDSYGNRVDRFLAGIA  273 (591)
T ss_dssp             EEEECTTCBCTTSCBCSSTTCCCBCTTSCBCSSCCEEEEEETTTC-CEEEEEECSSCCCCGGGGTCSSSSGGGCEEEEEE
T ss_pred             EEEccCCcccCCceEecccccccccccceeecCCcEEEEEeCCCC-CEEecccCCCCCCcccccccccccccccceeeEE
Confidence            88752211 0000            00000011  3556654333 223222211  111      11122222245567


Q ss_pred             cCCCCCCceeEEcCCCCCCCCccEEEEEeCCCCCCCCCCceEEecceeccccCCCccccc---eeeeccccCCCCCCCcE
Q psy1434         159 DINKDGFGDFAVGAPYDGPNERGVVYIYHGSPIGARENPSQIITAEEVNFGLQGSLTTFG---FSLAGGVDLDENQYPDL  235 (357)
Q Consensus       159 DiN~DG~~Dl~VgaP~~~~~~~G~Vyiy~g~~~g~~~~~~q~i~~~~~~~g~~~~~~~FG---~si~~~~D~d~DG~~Dl  235 (357)
                      +||++ .+.++++--++   ....|..|......    ..++........+   .....|   .+++. .|+|+||..+|
T Consensus       274 yLDG~-~Ps~v~~rGyY---tr~~v~A~d~~~~~----L~~~W~~d~~~~~---~~~~~gqg~h~~~v-aDVDgDG~dEI  341 (591)
T 2zux_A          274 YLDGQ-RPSLIMTRGYY---AKTMLVAYNFRDGK----LSKLWTLDSSKSG---NEAFAGQGNHNLSI-ADVDGDGKDEI  341 (591)
T ss_dssp             CTTSS-SCEEEEEECCS---SSCEEEEEEEETTE----EEEEEEEETTSTT---CGGGSSCCCSCCEE-ECCSSSSSCEE
T ss_pred             ECCCC-CceEEEecccc---ceeEEEEEECCCCc----eEEEEEecCCCCC---cccccccCCCCCee-EeCCCCCCceE
Confidence            99999 89898875444   23566666643221    1222221111101   011222   34444 59999999999


Q ss_pred             EEee
Q psy1434         236 VIGA  239 (357)
Q Consensus       236 ~VGa  239 (357)
                      ++|+
T Consensus       342 v~Gs  345 (591)
T 2zux_A          342 IFGS  345 (591)
T ss_dssp             EETT
T ss_pred             EEee
Confidence            9997

>2zuy_A YESX protein; beta-propeller, lyase; 1.65A {Bacillus subtilis}

Probab=97.94  E-value=0.00019  Score=72.45  Aligned_cols=192  Identities=19%  Similarity=0.235  Sum_probs=93.6

Q ss_pred             eEEEEeec--CCCeEEEee-cC---CCCe---ee--EEEEEEcCCceeeecc-CC--ccccccceEEEEEEeCCCCCceE
Q psy1434          36 SVASGFFS--GESGVAVGI-PR---GARL---LG--KVALYTTNMTNLQNIT-GE--QLGAYFAYAVTTSDVDGDGADDL  101 (357)
Q Consensus        36 sva~gd~~--g~~~~vvGa-P~---~~~~---~G--~V~i~~~~~~~~~~~~-g~--~~~s~fG~sva~~D~ngDG~~Dl  101 (357)
                      .+++||++  |..++|+-. |.   ...+   +|  .+..|+..++.++.+. +.  ..+..+ .++.+.|||+||+.+|
T Consensus       120 d~sVgDLDGDG~~EIVv~~d~~n~~d~s~~g~tg~~~l~aY~ldG~~LW~idlg~Ni~aGahy-t~~~V~DlDGDGkaEI  198 (620)
T 2zuy_A          120 DASVGDIDGDGEYEMILKWDPSNSKDNAHDGYTGEVLIDAYKLDGTFLWRINLGRNIRAGAHY-TQFMVYDLDGDGKAEI  198 (620)
T ss_dssp             EEEEECSSSSSSCEEEEEEEETTCCCTTSCCCCCCCEEEEECTTSCEEEEEECCTTSCCSTTS-CCCEEECSSSSSSCEE
T ss_pred             CCeEEecCCCCCeEEEEEECCCccccccccccCCCcEEEEEECCCCEEEEEcCCCCccccccc-CceeEEEcCCCCcceE
Confidence            36789999  677777654 21   1112   23  5567777666544332 22  222222 3678999999999999


Q ss_pred             EEec-cCcCCCC------------CCCCCccccE--EEEEEeCCCccceEEeeeec--CC------CcCCCcceeEEeec
Q psy1434         102 IIGA-PLYTNPT------------NNVGHYETGR--IYVVYQGKETYKFRRLHTRD--GK------NSKARFGLSLCNLG  158 (357)
Q Consensus       102 vvGa-P~~~~~~------------~~~~~~~~G~--Vyv~~~~~~~~~~~~~~~~~--g~------~~~~~fG~sva~~g  158 (357)
                      ++.+ +...+..            ...+.-..|.  ++||.+..+ ..+.......  +.      ..+.|...-++.++
T Consensus       199 vv~TadGt~dg~g~vigd~~~dyr~~~g~il~G~eyL~vfdG~TG-~~l~t~~~~p~rg~~~~WGD~yGnR~drf~~~va  277 (620)
T 2zuy_A          199 AMKTADGTTDGKGHIIGDEQADFRNEQGRILSGPEYLTVFKGETG-EALTTVEYEPPRGKLEDWGDGYGNRMDRFLAGTA  277 (620)
T ss_dssp             EEEECTTCBCTTSCBCSCTTCCCBCTTSCBCSSCCEEEEEETTTC-CEEEEEECSSCCCSGGGGTSSSSTTTTCEEEEEE
T ss_pred             EEEccCCcccCcceeecccccccccccceEecCCeEEEEEcCCCc-ceeeecccCCCcCccccccccccccccccceeEE
Confidence            8864 3221000            0001111233  444544322 2222222111  11      11222222245567


Q ss_pred             cCCCCCCceeEEcCCCCCCCCccEEEEEeCCCCCCCCCCceEEecceeccccCCCccc-cceeeeccccCCCCCCCcEEE
Q psy1434         159 DINKDGFGDFAVGAPYDGPNERGVVYIYHGSPIGARENPSQIITAEEVNFGLQGSLTT-FGFSLAGGVDLDENQYPDLVI  237 (357)
Q Consensus       159 DiN~DG~~Dl~VgaP~~~~~~~G~Vyiy~g~~~g~~~~~~q~i~~~~~~~g~~~~~~~-FG~si~~~~D~d~DG~~Dl~V  237 (357)
                      +||++ .+.++++--++   ....|..|.-....    ..++..-.....+.. .+.. -..+++. .|+|+||..+|++
T Consensus       278 yLDG~-~Ps~v~~rG~Y---tr~~v~A~d~~~g~----L~~~W~~ds~~~~~~-~~~gqg~H~~sv-aDVDGDG~dEIv~  347 (620)
T 2zuy_A          278 YLDGE-RPSLVMARGYY---TRTVLVAYDFRNGR----LKKRWVFDSNQPGHE-AYAGQGNHSLSV-ADVDGDGKDEIIY  347 (620)
T ss_dssp             CTTCC--CEEEEEECSS---SSCEEEEEEEETTE----EEEEEEEETTSTTCG-GGTTCCCSSCEE-ECCSSSSSCEEEE
T ss_pred             ecCCC-CceEEEecCcc---cceeEEEEEccCCc----eeeeeEecCCCCccc-ccccccCcCceE-EecCCCCceeEEE
Confidence            99999 88888876554   23456555433211    122222111000000 1111 1133443 5999999999999


Q ss_pred             ee
Q psy1434         238 GA  239 (357)
Q Consensus       238 Ga  239 (357)
                      |+
T Consensus       348 Gs  349 (620)
T 2zuy_A          348 GA  349 (620)
T ss_dssp             TT
T ss_pred             ee
Confidence            97

>2zux_A YESW protein; beta-propeller, lyase, rhamnose complex; HET: RAM; 1.32A {Bacillus subtilis} PDB: 2z8s_A* 2z8r_A*

Probab=97.07  E-value=0.0031  Score=63.50  Aligned_cols=87  Identities=22%  Similarity=0.260  Sum_probs=48.6

Q ss_pred             ccceEEEEEEeCCCCCceEEEec-cCcCCCCCCCCCccccEEEEEEeCCCccceEEeeeecCCCcCCCcceeEEeeccCC
Q psy1434          83 YFAYAVTTSDVDGDGADDLIIGA-PLYTNPTNNVGHYETGRIYVVYQGKETYKFRRLHTRDGKNSKARFGLSLCNLGDIN  161 (357)
Q Consensus        83 ~fG~sva~~D~ngDG~~DlvvGa-P~~~~~~~~~~~~~~G~Vyv~~~~~~~~~~~~~~~~~g~~~~~~fG~sva~~gDiN  161 (357)
                      |---.++++||||||..+||+.. |.....+...+......+.+|...++ .-|...... ....+..+. .+. +.|||
T Consensus       112 y~~nd~sVgDLDGDG~~EiVv~~dp~n~~d~s~~g~tg~~~l~aY~ldG~-~LW~idlg~-ni~aGa~yt-~~~-V~DlD  187 (591)
T 2zux_A          112 YSANDASVGDVDGDGQYELILKWDPSNSKDNSQDGYTGDVLIDAYKLDGT-KLWRINLGK-NIRAGAHYT-QFM-VYDLD  187 (591)
T ss_dssp             EEEEEEEEECSSSSSSCEEEEEEEETTCCCTTCCSCCCCCEEEEECTTSC-EEEEEECCT-TSCCSTTSC-CCE-EECSS
T ss_pred             eecCCCeEEecCCCCCEEEEEEECCcccccccccCcCCCcEEEEEECCCC-EEEEEcCCC-CcccccccC-cee-EEEcC
Confidence            33455789999999999998875 32111111111111246777776654 345322111 112222232 233 45999


Q ss_pred             CCCCceeEEcCC
Q psy1434         162 KDGFGDFAVGAP  173 (357)
Q Consensus       162 ~DG~~Dl~VgaP  173 (357)
                      +||..+|++.+-
T Consensus       188 GDGkaEIvv~Ta  199 (591)
T 2zux_A          188 GDGKAEVAMKTA  199 (591)
T ss_dssp             SSSSCEEEEEEC
T ss_pred             CCCcceEEEEcc
Confidence            999999988753

>2zuy_A YESX protein; beta-propeller, lyase; 1.65A {Bacillus subtilis}

Probab=96.63  E-value=0.05  Score=55.05  Aligned_cols=86  Identities=20%  Similarity=0.261  Sum_probs=47.6

Q ss_pred             ccceEEEEEEeCCCCCceEEEecc-CcCCCCCCCCCccccEEEEEEeCCCccceEEeeeecCCCcCCCcceeEEeeccCC
Q psy1434          83 YFAYAVTTSDVDGDGADDLIIGAP-LYTNPTNNVGHYETGRIYVVYQGKETYKFRRLHTRDGKNSKARFGLSLCNLGDIN  161 (357)
Q Consensus        83 ~fG~sva~~D~ngDG~~DlvvGaP-~~~~~~~~~~~~~~G~Vyv~~~~~~~~~~~~~~~~~g~~~~~~fG~sva~~gDiN  161 (357)
                      |---.++++||||||..+||+... .....+...+....-.+.+|...+. .-|...... ....+..+. .+. +.|||
T Consensus       116 y~and~sVgDLDGDG~~EIVv~~d~~n~~d~s~~g~tg~~~l~aY~ldG~-~LW~idlg~-Ni~aGahyt-~~~-V~DlD  191 (620)
T 2zuy_A          116 YSANDASVGDIDGDGEYEMILKWDPSNSKDNAHDGYTGEVLIDAYKLDGT-FLWRINLGR-NIRAGAHYT-QFM-VYDLD  191 (620)
T ss_dssp             EEEEEEEEECSSSSSSCEEEEEEEETTCCCTTSCCCCCCCEEEEECTTSC-EEEEEECCT-TSCCSTTSC-CCE-EECSS
T ss_pred             eecCCCeEEecCCCCCeEEEEEECCCccccccccccCCCcEEEEEECCCC-EEEEEcCCC-CcccccccC-cee-EEEcC
Confidence            334557799999999999988763 1111111111111235667776654 344422111 112222332 333 45999


Q ss_pred             CCCCceeEEcC
Q psy1434         162 KDGFGDFAVGA  172 (357)
Q Consensus       162 ~DG~~Dl~Vga  172 (357)
                      +||..+|++.+
T Consensus       192 GDGkaEIvv~T  202 (620)
T 2zuy_A          192 GDGKAEIAMKT  202 (620)
T ss_dssp             SSSSCEEEEEE
T ss_pred             CCCcceEEEEc
Confidence            99999998864

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	357
d1tyea_	452	b.69.8.1 (A:) Integrin alpha N-terminal domain {Hu	5e-50
d1tyea_	452	b.69.8.1 (A:) Integrin alpha N-terminal domain {Hu	2e-16
d1tyea_	452	b.69.8.1 (A:) Integrin alpha N-terminal domain {Hu	2e-04
d1tyea_	452	b.69.8.1 (A:) Integrin alpha N-terminal domain {Hu	0.004
d1jv2a4	438	b.69.8.1 (A:1-438) Integrin alpha N-terminal domai	5e-41
d1jv2a4	438	b.69.8.1 (A:1-438) Integrin alpha N-terminal domai	2e-14
d1jv2a4	438	b.69.8.1 (A:1-438) Integrin alpha N-terminal domai	2e-05
d1jv2a1	160	b.1.15.1 (A:439-598) Thigh, calf-1 and calf-2 doma	1e-05

>d1tyea_ b.69.8.1 (A:) Integrin alpha N-terminal domain {Human (Homo sapiens), isoform IIb [TaxId: 9606]} Length = 452

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Integrin alpha N-terminal domain
family: Integrin alpha N-terminal domain
domain: Integrin alpha N-terminal domain
species: Human (Homo sapiens), isoform IIb [TaxId: 9606]

 Score =  171 bits (434), Expect = 5e-50
 Identities = 86/253 (33%), Positives = 128/253 (50%), Gaps = 10/253 (3%)

Query: 2   SHSGQVISQNLYDRPEFKATKEGPPTDDGSYMGYSVASGFFSGESG---VAVGIPRGARL 58
             S +      +   +  +     P     Y GYSVA G F G+       VG P  +  
Sbjct: 204 FSSYRPGILLWHVSSQSLSFDSSNPEYFDGYWGYSVAVGEFDGDLNTTEYVVGAPTWSWT 263

Query: 59  LGKVALYTTNMTNLQNITGEQLGAYFAYAVTTSDVDGDGADDLIIGAPLYTNPTNNVGHY 118
           LG V +  +    L  +  EQ+ +YF ++V  +DV+GDG  DL++GAPLY     +    
Sbjct: 264 LGAVEILDSYYQRLHRLRAEQMASYFGHSVAVTDVNGDGRHDLLVGAPLYMESRADRKLA 323

Query: 119 ETGRIYVVYQGKETYKF-RRLHTRDGKNSKARFGLSLCNLGDINKDGFGDFAVGAPYDGP 177
           E GR+Y+  Q +  +          G     RFG ++  LGD+++DG+ D AV APY GP
Sbjct: 324 EVGRVYLFLQPRGPHALGAPSLLLTGTQLYGRFGSAIAPLGDLDRDGYNDIAVAAPYGGP 383

Query: 178 NERGVVYIYHGSPIGARENPSQIITAEEVNFGLQGSLTTFGFSLAGGVDLDENQYPDLVI 237
           + RG V ++ G   G R  PSQ++ +         + + FGFSL G VD+D+N YPDL++
Sbjct: 384 SGRGQVLVFLGQSEGLRSRPSQVLDSPF------PTGSAFGFSLRGAVDIDDNGYPDLIV 437

Query: 238 GAYESNTAFVLRS 250
           GAY +N   V R+
Sbjct: 438 GAYGANQVAVYRA 450

>d1tyea_ b.69.8.1 (A:) Integrin alpha N-terminal domain {Human (Homo sapiens), isoform IIb [TaxId: 9606]} Length = 452

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Integrin alpha N-terminal domain
family: Integrin alpha N-terminal domain
domain: Integrin alpha N-terminal domain
species: Human (Homo sapiens), isoform IIb [TaxId: 9606]

 Score = 78.1 bits (191), Expect = 2e-16
 Identities = 59/262 (22%), Positives = 100/262 (38%), Gaps = 33/262 (12%)

Query: 27  TDDGSYMGYSVASGFFSGESGVAVGIPRGARLLGKVALYTTNMTNLQN--ITGEQLGAYF 84
           T  G  +  +    +F G    A      +     + L+  +  +L       E    Y+
Sbjct: 176 TQAGELVLGAPGGYYFLGLLAQAPVADIFSSYRPGILLWHVSSQSLSFDSSNPEYFDGYW 235

Query: 85  AYAVTTSDVDGDG-ADDLIIGAPLYTNPTNNVGHYETGRIYVVYQGKETYKFRRLHTRDG 143
            Y+V   + DGD    + ++GAP +         +  G + ++        ++RLH    
Sbjct: 236 GYSVAVGEFDGDLNTTEYVVGAPTW--------SWTLGAVEILD-----SYYQRLHRLRA 282

Query: 144 KNSKARFGLSLCNLGDINKDGFGDFAVGAPYDGPNERGVVYIYHGSPIGARENPSQIITA 203
           +   + FG S+  + D+N DG  D  VGAP    +         G  +     P      
Sbjct: 283 EQMASYFGHSVA-VTDVNGDGRHDLLVGAPLYMESRADRKLAEVGR-VYLFLQPRGPHAL 340

Query: 204 EEVNFGLQGSLTT--FGFSLAGGVDLDENQYPDLVIGAYESNTAFVLRSTAPYDGPNERG 261
              +  L G+     FG ++A   DLD + Y D+ + A             PY GP+ RG
Sbjct: 341 GAPSLLLTGTQLYGRFGSAIAPLGDLDRDGYNDIAVAA-------------PYGGPSGRG 387

Query: 262 VVYIYHGSPIGARENPSQIITA 283
            V ++ G   G R  PSQ++ +
Sbjct: 388 QVLVFLGQSEGLRSRPSQVLDS 409

>d1tyea_ b.69.8.1 (A:) Integrin alpha N-terminal domain {Human (Homo sapiens), isoform IIb [TaxId: 9606]} Length = 452

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Integrin alpha N-terminal domain
family: Integrin alpha N-terminal domain
domain: Integrin alpha N-terminal domain
species: Human (Homo sapiens), isoform IIb [TaxId: 9606]

 Score = 40.3 bits (93), Expect = 2e-04
 Identities = 37/289 (12%), Positives = 72/289 (24%), Gaps = 55/289 (19%)

Query: 16  PEFKATKEGPPTDDGSYMGYSVASGFFS-GESGVAVGIPRGARLLGKV--ALY----TTN 68
           P       GP    GS  G+S+     S G   + VG PR      +    ++       
Sbjct: 5   PVQLTFYAGPN---GSQFGFSLDFHKDSHGRVAIVVGAPRTLGPSQEETGGVFLCPWRAE 61

Query: 69  MTNLQNITGEQLGAYFAYAVTTSDVDGDG----------ADDLIIGAPLY----TNPTNN 114
                ++  +           T                 +D ++  AP         T  
Sbjct: 62  GGQCPSLLFDLRDETRNVGSQTLQTFKARQGLGASVVSWSDVIVACAPWQHWNVLEKTEE 121

Query: 115 VGHYETGRIYVVYQGKETYK-----FRRLHTRDGKNSKARFGLSLCNLG---DINKDGFG 166
                 G  ++                   +R    +   +    C  G    + + G  
Sbjct: 122 AEKTPVGSCFLAQPESGRRAEYSPCRGNTLSRIYVENDFSWDKRYCEAGFSSVVTQAGEL 181

Query: 167 DFAVGAPYDGPNERGVVYIYHGSPIGARENPSQII------TAEEVNFGLQGSLTTFGFS 220
                  Y      G++     + I +   P  ++      +    +   +     +G+S
Sbjct: 182 VLGAPGGYYFL---GLLAQAPVADIFSSYRPGILLWHVSSQSLSFDSSNPEYFDGYWGYS 238

Query: 221 LAGGVDLDENQYPDLVIGAYESNTAFVLRSTAPYDGPNERGVVYIYHGS 269
           +A G    +    + V+GA   +                 G V I    
Sbjct: 239 VAVGEFDGDLNTTEYVVGAPTWS--------------WTLGAVEILDSY 273

>d1tyea_ b.69.8.1 (A:) Integrin alpha N-terminal domain {Human (Homo sapiens), isoform IIb [TaxId: 9606]} Length = 452

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Integrin alpha N-terminal domain
family: Integrin alpha N-terminal domain
domain: Integrin alpha N-terminal domain
species: Human (Homo sapiens), isoform IIb [TaxId: 9606]

 Score = 36.5 bits (83), Expect = 0.004
 Identities = 26/208 (12%), Positives = 62/208 (29%), Gaps = 23/208 (11%)

Query: 81  GAYFAYAVTTSDVDGDGADDLIIGAPLYTNPTNNVGHYETGRIY-------------VVY 127
           G+ F +++     D  G   +++GAP    P+      ETG ++             +++
Sbjct: 16  GSQFGFSLDF-HKDSHGRVAIVVGAPRTLGPSQE----ETGGVFLCPWRAEGGQCPSLLF 70

Query: 128 QGKETYKFRRLHTRDGKNSKARFGLSLCNLGDINKDGFGDFAVGAPYDGPNERGVVYI-- 185
             ++  +     T     ++   G S+ +  D+                           
Sbjct: 71  DLRDETRNVGSQTLQTFKARQGLGASVVSWSDVIVACAPWQHWNVLEKTEEAEKTPVGSC 130

Query: 186 YHGSPIGARENPSQIITAEEVNFGLQGSLTTFGFSLAG-GVDLDENQYPDLVIGAYESNT 244
           +   P   R           ++     +  ++       G      Q  +LV+GA     
Sbjct: 131 FLAQPESGRRAEYSPCRGNTLSRIYVENDFSWDKRYCEAGFSSVVTQAGELVLGAPGGYY 190

Query: 245 AF--VLRSTAPYDGPNERGVVYIYHGSP 270
               + ++       + R  + ++H S 
Sbjct: 191 FLGLLAQAPVADIFSSYRPGILLWHVSS 218

>d1jv2a4 b.69.8.1 (A:1-438) Integrin alpha N-terminal domain {Human (Homo sapiens), isoform V [TaxId: 9606]} Length = 438

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Integrin alpha N-terminal domain
family: Integrin alpha N-terminal domain
domain: Integrin alpha N-terminal domain
species: Human (Homo sapiens), isoform V [TaxId: 9606]

 Score =  147 bits (370), Expect = 5e-41
 Identities = 89/238 (37%), Positives = 137/238 (57%), Gaps = 8/238 (3%)

Query: 16  PEFKATKEGPPTDDGSYMGYSVASGFFS--GESGVAVGIPRGARLLGKVALYT-TNMTNL 72
               AT+      D SY+GYSVA G F+  G      G+PR AR LG V +Y   NM++L
Sbjct: 205 NNQLATRTAQAIFDDSYLGYSVAVGDFNGDGIDDFVSGVPRAARTLGMVYIYDGKNMSSL 264

Query: 73  QNITGEQLGAYFAYAVTTSDVDGDGADDLIIGAPLYTNPTNNVGHYETGRIYVVYQGKET 132
            N TGEQ+ AYF ++V  +D++GD   D+ IGAPL+ +  ++    E G++ V  Q    
Sbjct: 265 YNFTGEQMAAYFGFSVAATDINGDDYADVFIGAPLFMDRGSDGKLQEVGQVSVSLQ--RA 322

Query: 133 YKFRRLHTRDGKNSKARFGLSLCNLGDINKDGFGDFAVGAPYDGPNERGVVYIYHGSPIG 192
               +    +G    ARFG ++  LGD+++DGF D A+ APY G +++G+VYI++G   G
Sbjct: 323 SGDFQTTKLNGFEVFARFGSAIAPLGDLDQDGFNDIAIAAPYGGEDKKGIVYIFNGRSTG 382

Query: 193 ARENPSQIITAEEVNFGLQGSLTTFGFSLAGGVDLDENQYPDLVIGAYESNTAFVLRS 250
               PSQI+      +  +    +FG+S+ G  D+D+N YPDL++GA+  + A + R+
Sbjct: 383 LNAVPSQILEG---QWAARSMPPSFGYSMKGATDIDKNGYPDLIVGAFGVDRAILYRA 437

>d1jv2a4 b.69.8.1 (A:1-438) Integrin alpha N-terminal domain {Human (Homo sapiens), isoform V [TaxId: 9606]} Length = 438

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Integrin alpha N-terminal domain
family: Integrin alpha N-terminal domain
domain: Integrin alpha N-terminal domain
species: Human (Homo sapiens), isoform V [TaxId: 9606]

 Score = 71.6 bits (174), Expect = 2e-14
 Identities = 61/283 (21%), Positives = 97/283 (34%), Gaps = 45/283 (15%)

Query: 25  PPTDDGSYMGYSVASGFFSGESGVAVGIPRGARLLGKVALYTT----------------- 67
               DG        S  F+    V +G P      G++                      
Sbjct: 146 DIDADGQGFCQGGFSIDFTKADRVLLGGPGSFYWQGQLISDQVAEIVSKYDPNVYSIKYN 205

Query: 68  NMTNLQNITGEQLGAYFAYAVTTSDVDGDGADDLIIGAPLYTNPTNNVGHYETGRIYVVY 127
           N    +        +Y  Y+V   D +GDG DD + G P              G +Y+  
Sbjct: 206 NQLATRTAQAIFDDSYLGYSVAVGDFNGDGIDDFVSGVPRAARTL--------GMVYIYD 257

Query: 128 QGKETYKFRRLHTRDGKNSKARFGLSLCNLGDINKDGFGDFAVGAPYDGPNERGVVYIYH 187
               +     L+   G+   A FG S+    DIN D + D  +GAP              
Sbjct: 258 GKNMS----SLYNFTGEQMAAYFGFSVA-ATDINGDDYADVFIGAPLFMDRGSDGKLQEV 312

Query: 188 GSPIGARENPSQIITAEEVNFGLQGSLTTFGFSLAGGVDLDENQYPDLVIGAYESNTAFV 247
           G    + +  S      ++N         FG ++A   DLD++ + D+ I A        
Sbjct: 313 GQVSVSLQRASGDFQTTKLNGF--EVFARFGSAIAPLGDLDQDGFNDIAIAA-------- 362

Query: 248 LRSTAPYDGPNERGVVYIYHGSPIGARENPSQIITAEEVNFGL 290
                PY G +++G+VYI++G   G    PSQI+  +     +
Sbjct: 363 -----PYGGEDKKGIVYIFNGRSTGLNAVPSQILEGQWAARSM 400

>d1jv2a4 b.69.8.1 (A:1-438) Integrin alpha N-terminal domain {Human (Homo sapiens), isoform V [TaxId: 9606]} Length = 438

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Integrin alpha N-terminal domain
family: Integrin alpha N-terminal domain
domain: Integrin alpha N-terminal domain
species: Human (Homo sapiens), isoform V [TaxId: 9606]

 Score = 43.5 bits (101), Expect = 2e-05
 Identities = 48/299 (16%), Positives = 93/299 (31%), Gaps = 57/299 (19%)

Query: 21  TKEGPPTDDGSYMGYSVASGFFSGESG--VAVGIPRGARLLGKV----ALYTTNMTN--- 71
              GP    GSY G++V     S  S   + VG P+       +     +   + ++   
Sbjct: 10  EYSGPE---GSYFGFAVDFFVPSASSRMFLLVGAPKANTTQPGIVEGGQVLKCDWSSTRR 66

Query: 72  ---------------LQNITGEQLGAYFAYAVTTSDVDGDGADDLIIGAPLYTNPTNNVG 116
                            +    +   +F  +V +        D ++  APLY   T    
Sbjct: 67  CQPIEFDATGNRDYAKDDPLEFKSHQWFGASVRSKQ------DKILACAPLYHWRTEMKQ 120

Query: 117 HYETGRIYVVYQGKETYKFRRLHTRDGKNSKARFGLSLCNLGDINKDGFGDFAVGAPYDG 176
             E      +  G +T ++    ++D       F     ++     D       G+ Y  
Sbjct: 121 EREPVGTCFLQDGTKTVEYAPCRSQDIDADGQGFCQGGFSIDFTKADRVLLGGPGSFYW- 179

Query: 177 PNERGVVYIYHGSPIGARENPSQIITAEEVNFGLQGSL-----TTFGFSLAGGVDLDENQ 231
              +G +     + I ++ +P+            + +      +  G+S+A G D + + 
Sbjct: 180 ---QGQLISDQVAEIVSKYDPNVYSIKYNNQLATRTAQAIFDDSYLGYSVAVG-DFNGDG 235

Query: 232 YPDLVIGAYESNTAFVLRSTAPYDGPNERGVVYIYHGSPIGARENPSQIITAEEVNFGL 290
             D V G   +                  G+VYIY G  + +  N +    A    F +
Sbjct: 236 IDDFVSGVPRAA--------------RTLGMVYIYDGKNMSSLYNFTGEQMAAYFGFSV 280

>d1jv2a1 b.1.15.1 (A:439-598) Thigh, calf-1 and calf-2 domains of integrin alpha {Human (Homo sapiens) [TaxId: 9606]} Length = 160

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Integrin domains
family: Integrin domains
domain: Thigh, calf-1 and calf-2 domains of integrin alpha
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 42.7 bits (100), Expect = 1e-05
 Identities = 19/76 (25%), Positives = 27/76 (35%), Gaps = 4/76 (5%)

Query: 281 ITAEEVNFGLQELNVQILLDSKKPKS--PRMFFLSDEGKNVINQTLLLIKGTQFCKS-TV 337
              + V        V++LLD  K K    R  FL     +      +   G   C+    
Sbjct: 43  ADGKGVLPRKLNFQVELLLDKLKQKGAIRRALFLYSRSPSHSKNMTISRGGLMQCEELIA 102

Query: 338 DMVCEAE-RPLCTPIT 352
            +  E+E R   TPIT
Sbjct: 103 YLRDESEFRDKLTPIT 118

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	357
d1tyea_	452	Integrin alpha N-terminal domain {Human (Homo sapi	100.0
d1jv2a4	438	Integrin alpha N-terminal domain {Human (Homo sapi	100.0
d1jv2a4	438	Integrin alpha N-terminal domain {Human (Homo sapi	99.87
d1tyea_	452	Integrin alpha N-terminal domain {Human (Homo sapi	99.87
d1jv2a1	160	Thigh, calf-1 and calf-2 domains of integrin alpha	99.16

>d1tyea_ b.69.8.1 (A:) Integrin alpha N-terminal domain {Human (Homo sapiens), isoform IIb [TaxId: 9606]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Integrin alpha N-terminal domain
family: Integrin alpha N-terminal domain
domain: Integrin alpha N-terminal domain
species: Human (Homo sapiens), isoform IIb [TaxId: 9606]

Probab=100.00  E-value=1.8e-37  Score=307.96  Aligned_cols=221  Identities=38%  Similarity=0.694  Sum_probs=186.5

Q ss_pred             CCCCCCcceeeEEEEeec---CCCeEEEeecCCCCeeeEEEEEEcCCceeeeccCCccccccceEEEEEEeCCCCCceEE
Q psy1434          26 PTDDGSYMGYSVASGFFS---GESGVAVGIPRGARLLGKVALYTTNMTNLQNITGEQLGAYFAYAVTTSDVDGDGADDLI  102 (357)
Q Consensus        26 ~~~~~sy~G~sva~gd~~---g~~~~vvGaP~~~~~~G~V~i~~~~~~~~~~~~g~~~~s~fG~sva~~D~ngDG~~Dlv  102 (357)
                      ..+.++||||||++|+++   ..+++++|+|+.....|+|++|.++.+.+..+.+++.+++||++|+++|+|+||++||+
T Consensus       228 ~~~~~~~~G~sva~g~~~~~~~~~~~v~g~~~~~~~~G~v~i~~~~~~~~~~~~~~~~g~~fg~sv~~~D~ngDG~~Dl~  307 (452)
T d1tyea_         228 PEYFDGYWGYSVAVGEFDGDLNTTEYVVGAPTWSWTLGAVEILDSYYQRLHRLRAEQMASYFGHSVAVTDVNGDGRHDLL  307 (452)
T ss_dssp             GGGTTCCTTSEEEEECCSSCTTSCEEEEEETTHHHHTCEEEEECTTCCEEEEEECSSTTSCTTSEEEEECTTSSSSCEEE
T ss_pred             ccccCCccceEEEEeeccCCCCcceEEeccccccCcCCEEEEEecCCceEEEecccccCCceeeEEEEeecCCCCCccEE
Confidence            345678999999999998   35678889999766789999999988888889999999999999999999999999999


Q ss_pred             EeccCcCCCCCCCCCccccEEEEEEeCCCccceEE-eeeecCCCcCCCcceeEEeeccCCCCCCceeEEcCCCCCCCCcc
Q psy1434         103 IGAPLYTNPTNNVGHYETGRIYVVYQGKETYKFRR-LHTRDGKNSKARFGLSLCNLGDINKDGFGDFAVGAPYDGPNERG  181 (357)
Q Consensus       103 vGaP~~~~~~~~~~~~~~G~Vyv~~~~~~~~~~~~-~~~~~g~~~~~~fG~sva~~gDiN~DG~~Dl~VgaP~~~~~~~G  181 (357)
                      |++|.+..........+.|+||||.+......+.. ...+.+.....+||.+++.+||+|+||+.||+||||++.....|
T Consensus       308 Vga~~~~~~~~~~~~~~~G~v~v~~~~~~~~~~~~~~~~~~g~~~~~~fG~~~~~~gD~n~DG~~Dl~Vgap~~~~~~~G  387 (452)
T d1tyea_         308 VGAPLYMESRADRKLAEVGRVYLFLQPRGPHALGAPSLLLTGTQLYGRFGSAIAPLGDLDRDGYNDIAVAAPYGGPSGRG  387 (452)
T ss_dssp             EECTTCEEEETTTEEEECBEEEEECCCSSSCCCCSCSEEEECCSTTCCBTSEEEECCCSSCSSSCCEEEEETTCSSSSSC
T ss_pred             EeecccccccCcCccccCCeEEEEecCCCcccccccceeecCccccCCccceEEEEEccCCCCCceEEEEccCCCCCCCc
Confidence            99998865322223345799999998765322222 23455677789999999999999999999999999987656789


Q ss_pred             EEEEEeCCCCCCCCCCceEEecceeccccCCCccccceeeeccccCCCCCCCcEEEeecCCCcEEEEccCC
Q psy1434         182 VVYIYHGSPIGARENPSQIITAEEVNFGLQGSLTTFGFSLAGGVDLDENQYPDLVIGAYESNTAFVLRSTA  252 (357)
Q Consensus       182 ~Vyiy~g~~~g~~~~~~q~i~~~~~~~g~~~~~~~FG~si~~~~D~d~DG~~Dl~VGa~~~~~v~~~rsrp  252 (357)
                      +||||+++..+++..+.+++.....      ...+||++++..+|+|+||++||+|||+.+++|+|||+||
T Consensus       388 ~vyi~~~~~~g~~~~~~~~~~~~~~------~~~~fG~s~~~~~D~d~DG~~DlvVGa~~~~~~~l~r~~p  452 (452)
T d1tyea_         388 QVLVFLGQSEGLRSRPSQVLDSPFP------TGSAFGFSLRGAVDIDDNGYPDLIVGAYGANQVAVYRAQP  452 (452)
T ss_dssp             EEEEECBCSSSBCSSCSEEEECCSC------TTCCTTSEEEEEECSSCSSSCEEEEEEGGGTEEEEECBCC
T ss_pred             eEEEEEcCCCCccccceeeeccCCc------ccCceeeEeeeeeeeCCCCCeeEEEEccCCCeEEEEeCCC
Confidence            9999999988888888887765432      4688999998888999999999999999999999999998

>d1jv2a4 b.69.8.1 (A:1-438) Integrin alpha N-terminal domain {Human (Homo sapiens), isoform V [TaxId: 9606]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Integrin alpha N-terminal domain
family: Integrin alpha N-terminal domain
domain: Integrin alpha N-terminal domain
species: Human (Homo sapiens), isoform V [TaxId: 9606]

Probab=100.00  E-value=3.4e-35  Score=289.76  Aligned_cols=223  Identities=39%  Similarity=0.721  Sum_probs=186.3

Q ss_pred             CCCCCCCCcceeeEEEEeec--CCCeEEEeecCCCCeeeEEEEEEcC-CceeeeccCCccccccceEEEEEEeCCCCCce
Q psy1434          24 GPPTDDGSYMGYSVASGFFS--GESGVAVGIPRGARLLGKVALYTTN-MTNLQNITGEQLGAYFAYAVTTSDVDGDGADD  100 (357)
Q Consensus        24 ~~~~~~~sy~G~sva~gd~~--g~~~~vvGaP~~~~~~G~V~i~~~~-~~~~~~~~g~~~~s~fG~sva~~D~ngDG~~D  100 (357)
                      ......++||||||+++||+  |..+||+|||++....|.|++|+.. ...++.+.+.+.+++|+++++++|+|+||+.|
T Consensus       213 ~~~~~~~~~~G~sva~gd~~~DG~~dvvvGap~~~~~~g~v~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~D~ngDg~~D  292 (438)
T d1jv2a4         213 AQAIFDDSYLGYSVAVGDFNGDGIDDFVSGVPRAARTLGMVYIYDGKNMSSLYNFTGEQMAAYFGFSVAATDINGDDYAD  292 (438)
T ss_dssp             CCGGGCSCCBTSEEEEECCSSSSSCEEEEEETTHHHHTCEEEEEETTTCCEEEEEECSSTTSCTTSEEEEECTTSSSCCE
T ss_pred             cccccccccccceEEEeeECCCCcceEEEEeeccCCCceEEEEecCCCCcceeeeecccCCCccceeEEEEEecCCcccc
Confidence            33446789999999999999  7789999999976678999999864 44556788889999999999999999999999


Q ss_pred             EEEeccCcCCCCCCCCCccccEEEEEEeCCCccceEEeeeecCCCcCCCcceeEEeeccCCCCCCceeEEcCCCCCCCCc
Q psy1434         101 LIIGAPLYTNPTNNVGHYETGRIYVVYQGKETYKFRRLHTRDGKNSKARFGLSLCNLGDINKDGFGDFAVGAPYDGPNER  180 (357)
Q Consensus       101 lvvGaP~~~~~~~~~~~~~~G~Vyv~~~~~~~~~~~~~~~~~g~~~~~~fG~sva~~gDiN~DG~~Dl~VgaP~~~~~~~  180 (357)
                      |+|++|.+............|++|+|.+...  .+.....+.+....++||.+++.++|+|+||+.||+||||+......
T Consensus       293 l~vg~~~~~~~~~~~~~~~~g~v~~~~~~~~--~~~~~~~~~~~~~~~~fG~sv~~~gD~ngDG~~Di~Vgap~~~~~~~  370 (438)
T d1jv2a4         293 VFIGAPLFMDRGSDGKLQEVGQVSVSLQRAS--GDFQTTKLNGFEVFARFGSAIAPLGDLDQDGFNDIAIAAPYGGEDKK  370 (438)
T ss_dssp             EEEEETTCEEECTTSCEEECCEEEEEEECTT--SCEEEECCBCSSSSSCSBTCCBCCSCSSCSSSCCCBEEETTCSGGGC
T ss_pred             EEEeccccccccccccccccceeeeeccccc--ccccceeccCcccccccCceeEeeeeecCCCCcCEEEeCCCCCCCCC
Confidence            9999998865333223345689999988765  23344445677778999999999999999999999999998755678


Q ss_pred             cEEEEEeCCCCCCCCCCceEEecceeccccCCCccccceeeeccccCCCCCCCcEEEeecCCCcEEEEccC
Q psy1434         181 GVVYIYHGSPIGARENPSQIITAEEVNFGLQGSLTTFGFSLAGGVDLDENQYPDLVIGAYESNTAFVLRST  251 (357)
Q Consensus       181 G~Vyiy~g~~~g~~~~~~q~i~~~~~~~g~~~~~~~FG~si~~~~D~d~DG~~Dl~VGa~~~~~v~~~rsr  251 (357)
                      |+||||+++..+....+.|++.+....   +...+.||.|++..+|||+||++||+|||+.+++|+|||+|
T Consensus       371 G~vyi~~g~~~g~~~~~~~~~~~~~~~---~~~~~~fG~Svs~~~D~dgDG~~DlvVGa~~~d~~~l~r~r  438 (438)
T d1jv2a4         371 GIVYIFNGRSTGLNAVPSQILEGQWAA---RSMPPSFGYSMKGATDIDKNGYPDLIVGAFGVDRAILYRAR  438 (438)
T ss_dssp             CEEECCCEETTEECCSCSCEEECCCCC---SSSCCCTTSEEECCSCCSSSSSCEEEEEETTTTEEEEEEBC
T ss_pred             ceEEEEecCCCCccccceEEeeccccc---cccccccceeeeeeeeeCCCCCccEEEEecCCCcEEEEeCC
Confidence            999999998888887888888765432   22468999999988999999999999999999999999998

>d1jv2a4 b.69.8.1 (A:1-438) Integrin alpha N-terminal domain {Human (Homo sapiens), isoform V [TaxId: 9606]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Integrin alpha N-terminal domain
family: Integrin alpha N-terminal domain
domain: Integrin alpha N-terminal domain
species: Human (Homo sapiens), isoform V [TaxId: 9606]

Probab=99.87  E-value=1.2e-22  Score=199.37  Aligned_cols=243  Identities=26%  Similarity=0.369  Sum_probs=166.6

Q ss_pred             cceEEEEecCCCCceEEeecCCC-C---CCCCcceeeEEEEeecCCCeEEEeecCCCCeeeEEEEEEcC-------Cc--
Q psy1434           4 SGQVISQNLYDRPEFKATKEGPP-T---DDGSYMGYSVASGFFSGESGVAVGIPRGARLLGKVALYTTN-------MT--   70 (357)
Q Consensus         4 ~g~~~~~~~~~~~~~~~~~~~~~-~---~~~sy~G~sva~gd~~g~~~~vvGaP~~~~~~G~V~i~~~~-------~~--   70 (357)
                      .|.+|++..... ..+...+... .   .....+|++++.   .....+++|||+...+.|.+..+...       ..  
T Consensus       125 ~G~~yv~~~~~~-~~~~~~~~~~~~~~~~~~~~~g~s~~~---~~~~~~~~ga~g~~~~~~~~~~~~~~~~~~~~~~~~~  200 (438)
T d1jv2a4         125 VGTCFLQDGTKT-VEYAPCRSQDIDADGQGFCQGGFSIDF---TKADRVLLGGPGSFYWQGQLISDQVAEIVSKYDPNVY  200 (438)
T ss_dssp             CCEEEEECTTCC-EEECTTCCSCCSTTTTTTCCTTSEEEC---CTTSCCEEEETTHHHHTBEEEEECHHHHSTTCCTTCS
T ss_pred             eEEEEEecCCcc-eeecccccccccccccccccceeEEEe---ecCCceeEecccccccCceeEEecccceeeccCCccc
Confidence            388898865322 2222211111 1   223456777653   24457889999977788888776421       00  


Q ss_pred             ------eee--eccCCccccccceEEEEEEeCCCCCceEEEeccCcCCCCCCCCCccccEEEEEEeCCCccceEEeeeec
Q psy1434          71 ------NLQ--NITGEQLGAYFAYAVTTSDVDGDGADDLIIGAPLYTNPTNNVGHYETGRIYVVYQGKETYKFRRLHTRD  142 (357)
Q Consensus        71 ------~~~--~~~g~~~~s~fG~sva~~D~ngDG~~DlvvGaP~~~~~~~~~~~~~~G~Vyv~~~~~~~~~~~~~~~~~  142 (357)
                            ...  ........+|||++|+++|+|+||++|||||+|++..        ..|+||+|.....    .....+.
T Consensus       201 ~~~~~~~~~~~~~~~~~~~~~~G~sva~gd~~~DG~~dvvvGap~~~~--------~~g~v~~~~~~~~----~~~~~~~  268 (438)
T d1jv2a4         201 SIKYNNQLATRTAQAIFDDSYLGYSVAVGDFNGDGIDDFVSGVPRAAR--------TLGMVYIYDGKNM----SSLYNFT  268 (438)
T ss_dssp             CCCCTTEEECCCCCGGGCSCCBTSEEEEECCSSSSSCEEEEEETTHHH--------HTCEEEEEETTTC----CEEEEEE
T ss_pred             cccccccccccccccccccccccceEEEeeECCCCcceEEEEeeccCC--------CceEEEEecCCCC----cceeeee
Confidence                  001  1223456789999999999999999999999998764        4689999986543    2223344


Q ss_pred             CCCcCCCcceeEEeeccCCCCCCceeEEcCCCCCC-------CCccEEEEEeCCCCCCCCCCceEEecceeccccCCCcc
Q psy1434         143 GKNSKARFGLSLCNLGDINKDGFGDFAVGAPYDGP-------NERGVVYIYHGSPIGARENPSQIITAEEVNFGLQGSLT  215 (357)
Q Consensus       143 g~~~~~~fG~sva~~gDiN~DG~~Dl~VgaP~~~~-------~~~G~Vyiy~g~~~g~~~~~~q~i~~~~~~~g~~~~~~  215 (357)
                      +......|+++++. +|+|+||+.||+|++|+...       ...|++|+|.+...+..    +.....    + .....
T Consensus       269 ~~~~~~~~~~s~~~-~D~ngDg~~Dl~vg~~~~~~~~~~~~~~~~g~v~~~~~~~~~~~----~~~~~~----~-~~~~~  338 (438)
T d1jv2a4         269 GEQMAAYFGFSVAA-TDINGDDYADVFIGAPLFMDRGSDGKLQEVGQVSVSLQRASGDF----QTTKLN----G-FEVFA  338 (438)
T ss_dssp             CSSTTSCTTSEEEE-ECTTSSSCCEEEEEETTCEEECTTSCEEECCEEEEEEECTTSCE----EEECCB----C-SSSSS
T ss_pred             cccCCCccceeEEE-EEecCCccccEEEeccccccccccccccccceeeeecccccccc----cceecc----C-ccccc
Confidence            56677889999885 59999999999999997421       23688999988764432    111111    1 12468


Q ss_pred             ccceeeeccccCCCCCCCcEEEeecCCCcEEEEccCCCCCCCCCCCeEEEEEcccccccCCCceeeeccc
Q psy1434         216 TFGFSLAGGVDLDENQYPDLVIGAYESNTAFVLRSTAPYDGPNERGVVYIYHGSPIGARENPSQIITAEE  285 (357)
Q Consensus       216 ~FG~si~~~~D~d~DG~~Dl~VGa~~~~~v~~~rsrpv~~~~~~~G~v~~~~~~~~~~~~~~~q~i~~~~  285 (357)
                      +||.+++..+|+|+||+.||+||||.             .+.+.+|+||++.++.......+.|+|....
T Consensus       339 ~fG~sv~~~gD~ngDG~~Di~Vgap~-------------~~~~~~G~vyi~~g~~~g~~~~~~~~~~~~~  395 (438)
T d1jv2a4         339 RFGSAIAPLGDLDQDGFNDIAIAAPY-------------GGEDKKGIVYIFNGRSTGLNAVPSQILEGQW  395 (438)
T ss_dssp             CSBTCCBCCSCSSCSSSCCCBEEETT-------------CSGGGCCEEECCCEETTEECCSCSCEEECCC
T ss_pred             ccCceeEeeeeecCCCCcCEEEeCCC-------------CCCCCCceEEEEecCCCCccccceEEeeccc
Confidence            99999999999999999999999973             3456689999998876666666667776554

>d1tyea_ b.69.8.1 (A:) Integrin alpha N-terminal domain {Human (Homo sapiens), isoform IIb [TaxId: 9606]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Integrin alpha N-terminal domain
family: Integrin alpha N-terminal domain
domain: Integrin alpha N-terminal domain
species: Human (Homo sapiens), isoform IIb [TaxId: 9606]

Probab=99.87  E-value=1.2e-21  Score=193.23  Aligned_cols=217  Identities=28%  Similarity=0.461  Sum_probs=155.7

Q ss_pred             CcceeeEEEEeecCCCeEEEeecCCCCeeeEEEEEEcCCc----------------ee--eeccCCccccccceEEEEEE
Q psy1434          31 SYMGYSVASGFFSGESGVAVGIPRGARLLGKVALYTTNMT----------------NL--QNITGEQLGAYFAYAVTTSD   92 (357)
Q Consensus        31 sy~G~sva~gd~~g~~~~vvGaP~~~~~~G~V~i~~~~~~----------------~~--~~~~g~~~~s~fG~sva~~D   92 (357)
                      ..+|++++   +++...+++|+|....|.|.++.+.....                .+  .........+|||++|+++|
T Consensus       167 ~~~g~s~~---~~~~~~~~~ga~g~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~sva~g~  243 (452)
T d1tyea_         167 CEAGFSSV---VTQAGELVLGAPGGYYFLGLLAQAPVADIFSSYRPGILLWHVSSQSLSFDSSNPEYFDGYWGYSVAVGE  243 (452)
T ss_dssp             CCBTSEEE---ECTTSEEEEEETTHHHHTCEEEEEEHHHHHHHCCTTCCSCCCTTCEECCCCCCGGGTTCCTTSEEEEEC
T ss_pred             ccCceeee---eccCccEeecCccceeccceEEeecccccccccccceeeeccCCccccccccCccccCCccceEEEEee
Confidence            34566644   45566788999997789999988763210                00  01112345689999999999


Q ss_pred             eCCCCCce-EEEeccCcCCCCCCCCCccccEEEEEEeCCCccceEEeeeecCCCcCCCcceeEEeeccCCCCCCceeEEc
Q psy1434          93 VDGDGADD-LIIGAPLYTNPTNNVGHYETGRIYVVYQGKETYKFRRLHTRDGKNSKARFGLSLCNLGDINKDGFGDFAVG  171 (357)
Q Consensus        93 ~ngDG~~D-lvvGaP~~~~~~~~~~~~~~G~Vyv~~~~~~~~~~~~~~~~~g~~~~~~fG~sva~~gDiN~DG~~Dl~Vg  171 (357)
                      +++|+..| +++|+|+...        ..|+||||.....  .+   ..+.+.+..++||++|+ ++|+|+||+.||+|+
T Consensus       244 ~~~~~~~~~~v~g~~~~~~--------~~G~v~i~~~~~~--~~---~~~~~~~~g~~fg~sv~-~~D~ngDG~~Dl~Vg  309 (452)
T d1tyea_         244 FDGDLNTTEYVVGAPTWSW--------TLGAVEILDSYYQ--RL---HRLRAEQMASYFGHSVA-VTDVNGDGRHDLLVG  309 (452)
T ss_dssp             CSSCTTSCEEEEEETTHHH--------HTCEEEEECTTCC--EE---EEEECSSTTSCTTSEEE-EECTTSSSSCEEEEE
T ss_pred             ccCCCCcceEEeccccccC--------cCCEEEEEecCCc--eE---EEecccccCCceeeEEE-EeecCCCCCccEEEe
Confidence            99987655 5778988653        4699999976554  22   23456778899999998 469999999999999


Q ss_pred             CCCCCC-------CCccEEEEEeCCCCCCCC-CCceEEecceeccccCCCccccceeeeccccCCCCCCCcEEEeecCCC
Q psy1434         172 APYDGP-------NERGVVYIYHGSPIGARE-NPSQIITAEEVNFGLQGSLTTFGFSLAGGVDLDENQYPDLVIGAYESN  243 (357)
Q Consensus       172 aP~~~~-------~~~G~Vyiy~g~~~g~~~-~~~q~i~~~~~~~g~~~~~~~FG~si~~~~D~d~DG~~Dl~VGa~~~~  243 (357)
                      +|++..       .+.|+||||.+...+... .....+...       ....+||.+++..+|+|+||+.||+||||.  
T Consensus       310 a~~~~~~~~~~~~~~~G~v~v~~~~~~~~~~~~~~~~~~g~-------~~~~~fG~~~~~~gD~n~DG~~Dl~Vgap~--  380 (452)
T d1tyea_         310 APLYMESRADRKLAEVGRVYLFLQPRGPHALGAPSLLLTGT-------QLYGRFGSAIAPLGDLDRDGYNDIAVAAPY--  380 (452)
T ss_dssp             CTTCEEEETTTEEEECBEEEEECCCSSSCCCCSCSEEEECC-------STTCCBTSEEEECCCSSCSSSCCEEEEETT--
T ss_pred             ecccccccCcCccccCCeEEEEecCCCcccccccceeecCc-------cccCCccceEEEEEccCCCCCceEEEEccC--
Confidence            997531       246999999987644332 222223222       146789999999999999999999999973  


Q ss_pred             cEEEEccCCCCCCCCCCCeEEEEEcccccccCCCceeeecc
Q psy1434         244 TAFVLRSTAPYDGPNERGVVYIYHGSPIGARENPSQIITAE  284 (357)
Q Consensus       244 ~v~~~rsrpv~~~~~~~G~v~~~~~~~~~~~~~~~q~i~~~  284 (357)
                                 ......|+||++++........+.+++...
T Consensus       381 -----------~~~~~~G~vyi~~~~~~g~~~~~~~~~~~~  410 (452)
T d1tyea_         381 -----------GGPSGRGQVLVFLGQSEGLRSRPSQVLDSP  410 (452)
T ss_dssp             -----------CSSSSSCEEEEECBCSSSBCSSCSEEEECC
T ss_pred             -----------CCCCCCceEEEEEcCCCCccccceeeeccC
Confidence                       345678999999988776666666666543

>d1jv2a1 b.1.15.1 (A:439-598) Thigh, calf-1 and calf-2 domains of integrin alpha {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Integrin domains
family: Integrin domains
domain: Thigh, calf-1 and calf-2 domains of integrin alpha
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.16  E-value=2.7e-11  Score=101.96  Aligned_cols=88  Identities=20%  Similarity=0.258  Sum_probs=66.1

Q ss_pred             EEEEcccccccCCCceeeecccccccce---------------------------eEEEEEEEccCCCC--CCceEEecC
Q psy1434         264 YIYHGSPIGARENPSQIITAEEVNFGLQ---------------------------ELNVQILLDSKKPK--SPRMFFLSD  314 (357)
Q Consensus       264 ~~~~~~~~~~~~~~~q~i~~~~~~c~~~---------------------------~~~~~~~ld~~~~~--~~r~~f~~~  314 (357)
                      +.+.++..+.|    +.|+++.++|.++                           .|+|++.||+.+.+  .+|++|+.+
T Consensus         3 v~v~~~l~~~p----~~Id~~~~~C~~~~~~~~~~C~~v~~Cf~y~g~~~~~~~i~l~~~l~lD~~~~~~~~~R~~F~~~   78 (160)
T d1jv2a1           3 ITVNAGLEVYP----SILNQDNKTCSLPGTALKVSCFNVRFCLKADGKGVLPRKLNFQVELLLDKLKQKGAIRRALFLYS   78 (160)
T ss_dssp             EEEECCEEESS----CEECTTCCCBCCSSSCCCBCEEEEEEEEEEECSSSCCSCBCCEEEEEECTTCCTTCCCCCEESSS
T ss_pred             EEEEEEEEECC----ceeCCcccccccCCCCceEEeEEEEEEEEEccCcCCCceEEEEEEEEEEeccCCCCcccEEEcCC
Confidence            66777777655    4699998888642                           67788888886544  379999753


Q ss_pred             CCceEEEEEEEEe-CCCCCeEEEEEEee--cCCcceecceeeeee
Q psy1434         315 EGKNVINQTLLLI-KGTQFCKSTVDMVC--EAERPLCTPITPAVS  356 (357)
Q Consensus       315 ~~~~~~~~~~~l~-~~~~~C~~~~~~~~--~~~~D~l~pi~~~~~  356 (357)
                       +.....+++.+. .+++.|.++++||+  ++++|||+||.|+|+
T Consensus        79 -~~~~~~~~~~l~~~~~~~C~~~~~yl~~~~~i~D~lsPI~i~l~  122 (160)
T d1jv2a1          79 -RSPSHSKNMTISRGGLMQCEELIAYLRDESEFRDKLTPITIFME  122 (160)
T ss_dssp             -CSSEEEEECCBCSTTCCEEEEEEEECCCGGGCCCSSCCEEEEEE
T ss_pred             -CCCcEEEEEEEcCCCCcccEEEEEEEccCCccceeecCEEEEEE
Confidence             444566666665 35667999999997  479999999999986