Psyllid ID: psy14360

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-
Protein Sequence
MFVIITQLGFCCVYFVFVAQSSHQICLALDIDYKLHYHMAIMLAPILFTAMIRNLKYIAPISAVANLIMGLGIAAIYYYILQDLPPVSTRNYVGHIQQIPLFFGTVIFAFEGIALVLPLQREMKKKKNFNSSFGVLNMGSILIIALMLSMGFFGYLKYGENVKGSITLNLSDRKDDPLALVVVGSIGFGILCTYSLQFYVPVAIIWAELEEKYGPFKHPAFGETILRVSLVLLTCKLALVVVGSIGFGILCTYSLQFYVPVAIIWAELEEKYGPFKHPAFVPASSPSLSGTGKNQQTIPDEIWSVVTITAVQICLALDIDYKLHYHMAIMLAPILFTAMIRNLKYIAPISAVANLIMGLGIAAIYYYILQDLPPVSTRNYVGHIQQIPLFFGTVIFAFEGIALVLPLQREMKKKKNFNSSFGVLNMGSILIIALMLSMGFFGYLKYGENVKGSITLNLSDRKDDPLGYLDN
Secondary Structure (PSIPRED)
cEEEEEEHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHEEEEEEcccccccccccccccccccHHHHHHHHHHHccccccHHHHHHHHccccccccccccHHHHHHHHHHHHHHHHHHHHHHcccccccEEEEcccccccHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHccccccccHHHHHHHHHHHHHHHHHHHHHHcccccccccccccccHHHHHHHHHHHHHccccccccccccccccccccccccccccccccEEEEEEHHEEEEEcccccHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHEEEEEccccccccccccccccccHHHHHHHHHHHcccccccccHHHHHHcccccccccHHHHHHHHHHHHHHHHHHHHHHHHHcccccccEEEccccccccccccccc
Secondary Structure Prediction (SSPRO)
cEEEEEHHHHHHHHHHEHHHHHHHHHHHHcccHcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccHccccHHHHHHHHHHHHHHEEEccHHccccccccccccHHHHHHHHHHHHHHHHHHHHHHHEccccccEEEEEcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcHHHHHHHHccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccHccccHHHHHHHHHHHHHHEEEccHHccccccccccccHHHHHHHHHHHHHHHHHHHHHHHEccccccEEEEEccccccccccccccc
Coil and Loop (DISEMBL)
MFVIITQLGFCCVYFVFVAQSSHQICLALDIDYKLHYHMAIMLAPILFTAMIRNLKYIAPISAVANLIMGLGIAAIYYYILqdlppvstrnyvghiqqiPLFFGTVIFAFEGIALVLPLQREmkkkknfnssfgvlNMGSILIIALMLSMGFfgylkygenvkgsitlnlsdrkddplALVVVGSIGFGILCTYSLQFYVPVAIIWAELEekygpfkhpafgeTILRVSLVLLTCKLALVVVGSIGFGILCTYSLQFYVPVAIIWAELEekygpfkhpafvpasspslsgtgknqqtipdeIWSVVTITAVQICLALDIDYKLHYHMAIMLAPILFTAMIRNLKYIAPISAVANLIMGLGIAAIYYYILqdlppvstrnyvghiqqiPLFFGTVIFAFEGIALVLPLQREmkkkknfnssfgvlNMGSILIIALMLSMGFfgylkygenvkgsitlnlsdrkddplgyldn
Flexible Loop (DISEMBL)
MFVIITQLGFCCVYFVFVAQSSHQICLALDIDYKLHYHMAIMLAPILFTAMIRNLKYIAPISAVANLIMGLGIAAIYYYILQDLPPVSTRNYVGHIQQIPLFFGTVIFAFEGIALVLPLQREMKKKKNFNSSFGVLNMGSILIIALMLSMGFFGYLKYGENVKGSITLNLSDRKDDPLALVVVGSIGFGILCTYSLQFYVPVAIIWAELEEKYGPFKHPAFGETILRVSLVLLTCKLALVVVGSIGFGILCTYSLQFYVPVAIIWAELEEKYGPFKHPAFVPASSPSLSGTGKNQQTIPDEIWSVVTITAVQICLALDIDYKLHYHMAIMLAPILFTAMIRNLKYIAPISAVANLIMGLGIAAIYYYILQDLPPVSTRNYVGHIQQIPLFFGTVIFAFEGIALVLPLQREMKKKKNFNSSFGVLNMGSILIIALMLSMGFFGYLKYGENVKGSitlnlsdrkddplgyldn
Low Complexity Region (SEG)
MFVIITQLGFCCVYFVFVAQSSHQICLALDIDYKLHYHMAIMLAPILFTAMIRNLKYIAPISAVANLIMGLGIAAIYYYILQDLPPVSTRNYVGHIQQIPLFFGTVIFAFEGIALVLPLQREMKKKKNFNSSFGVLNMGSILIIALMLSMGFFGYLKYGENVKGSITLNLSDRKDDPLALVVVGSIGFGILCTYSLQFYVPVAIIWAELEEKYGPFKHPAFGETILRVSLVLLTCKLALVVVGSIGFGILCTYSLQFYVPVAIIWAELEEKYGPFKHPAFVPASSPSLSGTGKNQQTIPDEIWSVVTITAVQICLALDIDYKLHYHMAIMLAPILFTAMIRNLKYIAPISAVANLIMGLGIAAIYYYILQDLPPVSTRNYVGHIQQIPLFFGTVIFAFEGIALVLPLQREMKKKKNFNSSFGVLNMGSILIIALMLSMGFFGYLKYGENVKGSITLNLSDRKDDPLGYLDN
Disordered region (IsUnstruct)
*FVIITQLGFCCVYFVFVAQSSHQICLALDIDYKLHYHMAIMLAPILFTAMIRNLKYIAPISAVANLIMGLGIAAIYYYILQDLPPVSTRNYVGHIQQIPLFFGTVIFAFEGIALVLPLQREMKKKKNFNSSFGVLNMGSILIIALMLSMGFFGYLKYGENVKGSI************ALVVVGSIGFGILCTYSLQFYVPVAIIWAELEEKYGPFKHPAFGETILRVSLVLLTCKLALVVVGSIGFGILCTYSLQFYVPVAIIWAELEEKYGPFKHPAF*****************IPDEIWSVVTITAVQICLALDIDYKLHYHMAIMLAPILFTAMIRNLKYIAPISAVANLIMGLGIAAIYYYILQDLPPVSTRNYVGHIQQIPLFFGTVIFAFEGIALVLPLQREMKKKKNFNSSFGVLNMGSILIIALMLSMGFFGYLKYGENVKGSI*****************
Disordered Region (DISOPRED)
MFVIITQLGFCCVYFVFVAQSSHQICLALDIDYKLHYHMAIMLAPILFTAMIRNLKYIAPISAVANLIMGLGIAAIYYYILQDLPPVSTRNYVGHIQQIPLFFGTVIFAFEGIALVLPLQREMKKKKNFNSSFGVLNMGSILIIALMLSMGFFGYLKYGENVKGSITLNLSDRKDDPLALVVVGSIGFGILCTYSLQFYVPVAIIWAELEEKYGPFKHPAFGETILRVSLVLLTCKLALVVVGSIGFGILCTYSLQFYVPVAIIWAELEEKYGPFKHPAFVPASSPSLSGTGKNQQTIPDEIWSVVTITAVQICLALDIDYKLHYHMAIMLAPILFTAMIRNLKYIAPISAVANLIMGLGIAAIYYYILQDLPPVSTRNYVGHIQQIPLFFGTVIFAFEGIALVLPLQREMKKKKNFNSSFGVLNMGSILIIALMLSMGFFGYLKYGENVKGSITLNLSDRKDDPLGYLD*
Disordered Region (DISEMBL)
MFVIITQLGFCCVYFVFVAQSSHQICLALDIDYKLHYHMAIMLAPILFTAMIRNLKYIAPISAVANLIMGLGIAAIYYYILQDLPPVSTRNYVGHIQQIPLFFGTVIFAFEGIALVLPLQREMKKKKNFNSSFGVLNMGSILIIALMLSMGFFGYLKYGENVKGSITLNLSDRKDDPLALVVVGSIGFGILCTYSLQFYVPVAIIWAELEEKYGPFKHPAFGETILRVSLVLLTCKLALVVVGSIGFGILCTYSLQFYVPVAIIWAELEEKYGPFKHPAFVPASS***********TIPDEIWSVVTITAVQICLALDIDYKLHYHMAIMLAPILFTAMIRNLKYIAPISAVANLIMGLGIAAIYYYILQDLPPVSTRNYVGHIQQIPLFFGTVIFAFEGIALVLPLQREMKKKKNFNSSFGVLNMGSILIIALMLSMGFFGYLKYGENVKGSITLNLSDRKDDPLGYLDN
Disordered Region (DISPRO)
MFVIITQLGFCCVYFVFVAQSSHQICLALDIDYKLHYHMAIMLAPILFTAMIRNLKYIAPISAVANLIMGLGIAAIYYYILQDLPPVSTRNYVGHIQQIPLFFGTVIFAFEGIALVLPLQREMKKKKNFNSSFGVLNMGSILIIALMLSMGFFGYLKYGENVKGSITLNLSDRKDDPLALVVVGSIGFGILCTYSLQFYVPVAIIWAELEEKYGPFKHPAFGETILRVSLVLLTCKLALVVVGSIGFGILCTYSLQFYVPVAIIWAELEEKYGPFKHPAFVPASSPSLSGTGKNQQTIPDEIWSVVTITAVQICLALDIDYKLHYHMAIMLAPILFTAMIRNLKYIAPISAVANLIMGLGIAAIYYYILQDLPPVSTRNYVGHIQQIPLFFGTVIFAFEGIALVLPLQREMKKKKNFNSSFGVLNMGSILIIALMLSMGFFGYLKYGENVKGSITLNLSDRKDDPLGYLDN
Transmembrane Helix (TMHMM)
iHHHHHHHHHHHHHHHHHHHooooooooooooooHHHHHHHHHHHHHHHHHHiiiiiiHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHiiiiiiHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHooooooooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiHHHHHHHHHHHHHHHHHHHHHHHHoooHHHHHHHHHHHHHHHHHHHHHHHHiiiiHHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHooHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHoooHHHHHHHHHHHHHHHHHHHHHHHHiiiiiHHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiHHHHHHHHHHHHHHHHoooooooooooooooHHHHHHHHHHHHHHHHHiiiiiHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHoooHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHoooooooooHHHHHHHHHHHHHHHHiiiiiiHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
SSSSSSSSSSSSSSSSSSSSSoooooooooooooooHHHHHHHHHHHHHHHHHHHiiiiiiHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHiiiiiiiiiiiHHHHHHHHHHHHHHHHHHoooooooooooooooooooHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MFVIITQLGFCCVYFVFVAQSSHQICLALDIDYKLHYHMAIMLAPILFTAMIRNLKYIAPISAVANLIMGLGIAAIYYYILQDLPPVSTRNYVGHIQQIPLFFGTVIFAFEGIALVLPLQREMKKKKNFNSSFGVLNMGSILIIALMLSMGFFGYLKYGENVKGSITLNLSDRKDDPLALVVVGSIGFGILCTYSLQFYVPVAIIWAELEEKYGPFKHPAFGETILRVSLVLLTCKLALVVVGSIGFGILCTYSLQFYVPVAIIWAELEEKYGPFKHPAFVPASSPSLSGTGKNQQTIPDEIWSVVTITAVQICLALDIDYKLHYHMAIMLAPILFTAMIRNLKYIAPISAVANLIMGLGIAAIYYYILQDLPPVSTRNYVGHIQQIPLFFGTVIFAFEGIALVLPLQREMKKKKNFNSSFGVLNMGSILIIALMLSMGFFGYLKYGENVKGSITLNLSDRKDDPLGYLDN
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	471	2.2.26 [Sep-21-2011]
Q8BHK3	478	Proton-coupled amino acid	yes	N/A	0.486	0.479	0.359	4e-34
Q7Z2H8	476	Proton-coupled amino acid	yes	N/A	0.494	0.489	0.368	3e-33
Q4KL91	522	Proton-coupled amino acid	N/A	N/A	0.494	0.446	0.357	4e-32
Q8K4D3	475	Proton-coupled amino acid	no	N/A	0.490	0.486	0.369	9e-32
Q495M3	483	Proton-coupled amino acid	no	N/A	0.481	0.469	0.344	2e-31
Q6YBV0	504	Proton-coupled amino acid	no	N/A	0.492	0.460	0.35	4e-31
Q924A5	475	Proton-coupled amino acid	yes	N/A	0.490	0.486	0.361	6e-31
Q8CH36	500	Proton-coupled amino acid	no	N/A	0.418	0.394	0.370	1e-29
Q8K415	481	Proton-coupled amino acid	no	N/A	0.477	0.467	0.349	1e-29
Q495N2	470	Proton-coupled amino acid	no	N/A	0.486	0.487	0.347	1e-25

>sp|Q8BHK3|S36A2_MOUSE Proton-coupled amino acid transporter 2 OS=Mus musculus GN=Slc36a2 PE=1 SV=1

 Score =  146 bits (368), Expect = 4e-34,   Method: Compositional matrix adjust.
 Identities = 93/259 (35%), Positives = 148/259 (57%), Gaps = 30/259 (11%)

Query: 2   FVIITQLGFCCVYFVFVAQSSHQICLALD-IDYKLHYHMAIMLAPILFTAM--------- 51
           F+I+TQLGFCCVY VF+A +  Q+  A++      H +  ++L P + + +         
Sbjct: 148 FLIVTQLGFCCVYIVFLADNLKQVVEAVNSTTISCHKNETVVLTPTMDSRLYMLSFLPVL 207

Query: 52  -----IRNLKYIAPISAVANLIMGLGIAAIYYYILQDLPPVSTRNYVGHIQQIPLFFGTV 106
                +RNL+ +   S +AN+ M + +  I  YI+Q++P  S    V   +  PLFFGT 
Sbjct: 208 GLLVFVRNLRVLTIFSLLANISMLVSLVIIAQYIIQEIPDASQLPLVASWKTYPLFFGTA 267

Query: 107 IFAFEGIALVLPLQREMKKKKNFNSSFGVLNMGSILIIALMLSMGFFGYLKYGENVKGSI 166
           IF+FE I +VLPL+ +MK  + F +   +L++G  +I  L +++G  GYL++G+++K SI
Sbjct: 268 IFSFESIGVVLPLENKMKDARGFPT---ILSLGMSIITTLYIAIGALGYLRFGDDIKASI 324

Query: 167 TLNLSD---RKDDPLALVVVGSIGFGILCTYSLQFYVPVAIIWA-ELEEKYGPFKHPAFG 222
           TLNL +    +   L  VV      GILCTY+LQFYVP  II    + +    +  P   
Sbjct: 325 TLNLPNCWLYQSVKLLYVV------GILCTYALQFYVPAEIIIPLAVSQVSKRWALPV-- 376

Query: 223 ETILRVSLVLLTCKLALVV 241
           +  +R++LV LTC LA+++
Sbjct: 377 DLSIRLALVCLTCMLAILI 395

Involved in a pH-dependent electrogenic neuronal transport and sequestration of small amino acids amino acids such as glycine, alanine and proline. Inhibited by sarcosine.
Mus musculus (taxid: 10090)

>sp|Q7Z2H8|S36A1_HUMAN Proton-coupled amino acid transporter 1 OS=Homo sapiens GN=SLC36A1 PE=1 SV=1

 Score =  143 bits (360), Expect = 3e-33,   Method: Compositional matrix adjust.
 Identities = 94/255 (36%), Positives = 141/255 (55%), Gaps = 22/255 (8%)

Query: 2   FVIITQLGFCCVYFVFVAQSSHQICLALD-IDYKLHYHMAIMLAPILFTAM--------- 51
           F+I+TQLGFCCVYFVF+A +  Q+  A +      H +  ++L P + + +         
Sbjct: 146 FLIVTQLGFCCVYFVFLADNFKQVIEAANGTTNNCHNNETVILTPTMDSRLYMLSFLPFL 205

Query: 52  -----IRNLKYIAPISAVANLIMGLGIAAIYYYILQDLPPVSTRNYVGHIQQIPLFFGTV 106
                IRNL+ ++  S +AN+ M + +  IY +I+Q +P  S    V   +  PLFFGT 
Sbjct: 206 VLLVFIRNLRALSIFSLLANITMLVSLVMIYQFIVQRIPDPSHLPLVAPWKTYPLFFGTA 265

Query: 107 IFAFEGIALVLPLQREMKKKKNFNSSFGVLNMGSILIIALMLSMGFFGYLKYGENVKGSI 166
           IF+FEGI +VLPL+ +MK  + F     +L +G +++  L +S+G  GYL++G N++GSI
Sbjct: 266 IFSFEGIGMVLPLENKMKDPRKFPL---ILYLGMVIVTILYISLGCLGYLQFGANIQGSI 322

Query: 167 TLNLSDRKDDPLALVVVGSIGFGILCTYSLQFYVPVAIIWAELEEKYGPFKHPAFGETIL 226
           TLNL +     L   V      GI  TY+LQFYVP  II      +  P       +  +
Sbjct: 323 TLNLPNCW---LYQSVKLLYSIGIFFTYALQFYVPAEIIIPFFVSR-APEHCELVVDLFV 378

Query: 227 RVSLVLLTCKLALVV 241
           R  LV LTC LA+++
Sbjct: 379 RTVLVCLTCILAILI 393

Neutral amino acid/proton symporter. Has a pH-dependent electrogenic transport activity for small amino acids such as glycine, alanine and proline. Besides small apolar L-amino acids, it also recognize their D-enantiomers and selected amino acid derivatives such as gamma-aminobutyric acid.

Homo sapiens (taxid: 9606)

>sp|Q4KL91|S36A4_XENLA Proton-coupled amino acid transporter 4 OS=Xenopus laevis GN=slc36a4 PE=2 SV=1

 Score =  139 bits (351), Expect = 4e-32,   Method: Compositional matrix adjust.
 Identities = 90/252 (35%), Positives = 142/252 (56%), Gaps = 19/252 (7%)

Query: 2   FVIITQLGFCCVYFVFVAQSSHQICLALDIDYKLHY------------HMAIMLAPILFT 49
           F+++TQLGFC VYFVF+A++  Q+   + ++ KL              +M   L  I+  
Sbjct: 185 FLVVTQLGFCSVYFVFLAENIKQV-FEVFLETKLQQSEIGIWSLDLRIYMFSFLPLIIPL 243

Query: 50  AMIRNLKYIAPISAVANLIMGLGIAAIYYYILQDLPPVSTRNYVGHIQQIPLFFGTVIFA 109
             IR+LK ++ +S  AN+ M + +  +Y Y++++L    T       +  PLFFGT IFA
Sbjct: 244 VFIRDLKNLSLLSFFANVSMAISLLIVYQYVIRNLSDPRTLPLGTSWKTYPLFFGTAIFA 303

Query: 110 FEGIALVLPLQREMKKKKNFNSSFGVLNMGSILIIALMLSMGFFGYLKYGENVKGSITLN 169
           FEGI +VLPL+  M+ KK+F+ +   LN+G  ++  L +S+   GY  +G+ +KGSITLN
Sbjct: 304 FEGIGVVLPLENRMRDKKDFSKA---LNIGMAIVTTLYISLATLGYFCFGDQIKGSITLN 360

Query: 170 LSDRKDDPLALVVVGSIGFGILCTYSLQFYVPVAIIWAELEEKYGPFKHPAFGETILRVS 229
           L   +D  L  +V     FGI  TY++Q+YVP  II   +  +    +     E  +R  
Sbjct: 361 LP--QDSWLYQLVKILYSFGIYVTYAIQYYVPAEIILPAVTSRVQKTRK-LLCEFTMRFF 417

Query: 230 LVLLTCKLALVV 241
           LV LTC +A+++
Sbjct: 418 LVCLTCAVAVLI 429

Xenopus laevis (taxid: 8355)

>sp|Q8K4D3|S36A1_MOUSE Proton-coupled amino acid transporter 1 OS=Mus musculus GN=Slc36a1 PE=2 SV=1

 Score =  138 bits (347), Expect = 9e-32,   Method: Compositional matrix adjust.
 Identities = 95/257 (36%), Positives = 142/257 (55%), Gaps = 26/257 (10%)

Query: 2   FVIITQLGFCCVYFVFVAQSSHQICLALD-----------------IDYKLHYHMAIMLA 44
           F+I+TQLGFCCVYFVF+A +  Q+  A +                 +D +L+  M   L 
Sbjct: 145 FLIVTQLGFCCVYFVFLADNFKQVIEAANGTTTNCNNNVTVIPTPTMDSRLY--MLSFLP 202

Query: 45  PILFTAMIRNLKYIAPISAVANLIMGLGIAAIYYYILQDLPPVSTRNYVGHIQQIPLFFG 104
            ++  + IRNL+ ++  S +AN+ M + +  IY +I+Q +P  S    V   +  PLFFG
Sbjct: 203 FLVLLSFIRNLRVLSIFSLLANISMFVSLIMIYQFIVQRIPDPSHLPLVAPWKTYPLFFG 262

Query: 105 TVIFAFEGIALVLPLQREMKKKKNFNSSFGVLNMGSILIIALMLSMGFFGYLKYGENVKG 164
           T IFAFEGI +VLPL+ +MK  + F     +L +G  +I  L +S+G  GYL++G N+KG
Sbjct: 263 TAIFAFEGIGVVLPLENKMKDSQKFPL---ILYLGMAIITVLYISLGSLGYLQFGANIKG 319

Query: 165 SITLNLSDRKDDPLALVVVGSIGFGILCTYSLQFYVPVAIIWAELEEKYGPFKHPAFGET 224
           SITLNL +     L   V      GI  TY+LQFYV   II   +  +  P       + 
Sbjct: 320 SITLNLPNCW---LYQSVKLLYSIGIFFTYALQFYVAAEIIIPAIVSRV-PEHFELMVDL 375

Query: 225 ILRVSLVLLTCKLALVV 241
            +R ++V +TC LA+++
Sbjct: 376 CVRTAMVCVTCVLAILI 392

Neutral amino acid/proton symporter. Has a pH-dependent electrogenic transport activity for small amino acids such as glycine, alanine and proline. Besides small apolar L-amino acids, it also recognize their D-enantiomers and selected amino acid derivatives such as gamma-aminobutyric acid.

Mus musculus (taxid: 10090)

>sp|Q495M3|S36A2_HUMAN Proton-coupled amino acid transporter 2 OS=Homo sapiens GN=SLC36A2 PE=1 SV=1

 Score =  137 bits (344), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 90/261 (34%), Positives = 147/261 (56%), Gaps = 34/261 (13%)

Query: 2   FVIITQLGFCCVYFVFVAQSSHQICLALDIDYKLHY-HMAIMLAPILFTAM--------- 51
           F+IITQLGFCCVY VF+A +  Q+  A++      Y +  ++L P + + +         
Sbjct: 153 FLIITQLGFCCVYIVFLADNLKQVVEAVNSTTNNCYSNETVILTPTMDSRLYMLSFLPFL 212

Query: 52  -----IRNLKYIAPISAVANLIMGLGIAAIYYYILQDLPPVSTRNYVGHIQQIPLFFGTV 106
                IRNL+ +   S +AN+ M + +  I  YI Q++P  S    V   +  PLFFGT 
Sbjct: 213 VLLVLIRNLRILTIFSMLANISMLVSLVIIIQYITQEIPDPSRLPLVASWKTYPLFFGTA 272

Query: 107 IFAFEGIALVLPLQREMKKKKNFNSSFGVLNMGSILIIALMLSMGFFGYLKYGENVKGSI 166
           IF+FE I +VLPL+ +MK  ++F +   +L++G  ++ +L + M   GYL++G+++K SI
Sbjct: 273 IFSFESIGVVLPLENKMKNARHFPA---ILSLGMSIVTSLYIGMAALGYLRFGDDIKASI 329

Query: 167 TLNLSD-RKDDPLALVVVGSIGFGILCTYSLQFYVPVAII----WAELEEKYG-PFKHPA 220
           +LNL +      + L+ +     GILCTY+LQFYVP  II     + +  ++  P     
Sbjct: 330 SLNLPNCWLYQSVKLLYIA----GILCTYALQFYVPAEIIIPFAISRVSTRWALPL---- 381

Query: 221 FGETILRVSLVLLTCKLALVV 241
             +  +R+ +V LTC LA+++
Sbjct: 382 --DLSIRLVMVCLTCLLAILI 400

Involved in a pH-dependent electrogenic neuronal transport and sequestration of small amino acids. Transports glycine and proline. Inhibited by sarcosine.

Homo sapiens (taxid: 9606)

>sp|Q6YBV0|S36A4_HUMAN Proton-coupled amino acid transporter 4 OS=Homo sapiens GN=SLC36A4 PE=1 SV=1

 Score =  136 bits (342), Expect = 4e-31,   Method: Compositional matrix adjust.
 Identities = 91/260 (35%), Positives = 140/260 (53%), Gaps = 28/260 (10%)

Query: 2   FVIITQLGFCCVYFVFVAQSSHQI--------------------CLALDIDYKLHYHMAI 41
           F++ITQLGFC VY VF+A++  Q+                    C    +D +++  M  
Sbjct: 158 FLVITQLGFCSVYIVFLAENVKQVHEGFLESKVFISNSTNSSNPCERRSVDLRIY--MLC 215

Query: 42  MLAPILFTAMIRNLKYIAPISAVANLIMGLGIAAIYYYILQDLPPVSTRNYVGHIQQIPL 101
            L  I+    IR LK +  +S +AN+ M + +  IY Y+++++P       V   ++ PL
Sbjct: 216 FLPFIILLVFIRELKNLFVLSFLANVSMAVSLVIIYQYVVRNMPDPHNLPIVAGWKKYPL 275

Query: 102 FFGTVIFAFEGIALVLPLQREMKKKKNFNSSFGVLNMGSILIIALMLSMGFFGYLKYGEN 161
           FFGT +FAFEGI +VLPL+ +MK+ K F  +   LN+G  ++  L +++   GY+ + + 
Sbjct: 276 FFGTAVFAFEGIGVVLPLENQMKESKRFPQA---LNIGMGIVTTLYVTLATLGYMCFHDE 332

Query: 162 VKGSITLNLSDRKDDPLALVVVGSIGFGILCTYSLQFYVPVAIIWAELEEKYGPFKHPAF 221
           +KGSITLNL   +D  L   V     FGI  TYS+QFYVP  II   +  K+   K    
Sbjct: 333 IKGSITLNLP--QDVWLYQSVKILYSFGIFVTYSIQFYVPAEIIIPGITSKFHT-KWKQI 389

Query: 222 GETILRVSLVLLTCKLALVV 241
            E  +R  LV +TC  A+++
Sbjct: 390 CEFGIRSFLVSITCAGAILI 409

Functions as a sodium-independent electroneutral transporter for tryptophan, proline and alanine. Inhibited by sarcosine.

Homo sapiens (taxid: 9606)

>sp|Q924A5|S36A1_RAT Proton-coupled amino acid transporter 1 OS=Rattus norvegicus GN=Slc36a1 PE=2 SV=1

 Score =  135 bits (341), Expect = 6e-31,   Method: Compositional matrix adjust.
 Identities = 93/257 (36%), Positives = 141/257 (54%), Gaps = 26/257 (10%)

Query: 2   FVIITQLGFCCVYFVFVAQSSHQIC-----------------LALDIDYKLHYHMAIMLA 44
           F+++TQLGFCCVYFVF+A +  Q+                  L   +D +L+  M   L 
Sbjct: 145 FLVVTQLGFCCVYFVFLADNFKQVIEAANGTTTNCNNNETVILTPTMDSRLY--MLTFLP 202

Query: 45  PILFTAMIRNLKYIAPISAVANLIMGLGIAAIYYYILQDLPPVSTRNYVGHIQQIPLFFG 104
            ++  + IRNL+ ++  S +AN+ M + +  IY +I+Q +P  S    V   +  PLFFG
Sbjct: 203 FLVLLSFIRNLRILSIFSLLANISMFVSLIMIYQFIVQRIPDPSHLPLVAPWKTYPLFFG 262

Query: 105 TVIFAFEGIALVLPLQREMKKKKNFNSSFGVLNMGSILIIALMLSMGFFGYLKYGENVKG 164
           T IFAFEGI +VLPL+ +MK  + F     +L +G  +I  L +S+G  GYL++G ++KG
Sbjct: 263 TAIFAFEGIGVVLPLENKMKDSQKFPL---ILYLGMAIITVLYISLGSLGYLQFGADIKG 319

Query: 165 SITLNLSDRKDDPLALVVVGSIGFGILCTYSLQFYVPVAIIWAELEEKYGPFKHPAFGET 224
           SITLNL +     L   V      GI  TY+LQFYV   II   +  +  P +     + 
Sbjct: 320 SITLNLPNCW---LYQSVKLLYSIGIFFTYALQFYVAAEIIIPAIVSRV-PERFELVVDL 375

Query: 225 ILRVSLVLLTCKLALVV 241
             R ++V +TC LA+++
Sbjct: 376 SARTAMVCVTCVLAVLI 392

Neutral amino acid/proton symporter. Probably involved in the efflux of lysosomal proteolysis products such as L-proline, L-alanine and glycine from the cell. May play a role in specifying sites for exocytosis in neurons.

Rattus norvegicus (taxid: 10116)

>sp|Q8CH36|S36A4_MOUSE Proton-coupled amino acid transporter 4 OS=Mus musculus GN=Slc36a4 PE=2 SV=1

 Score =  131 bits (330), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 83/224 (37%), Positives = 122/224 (54%), Gaps = 27/224 (12%)

Query: 2   FVIITQLGFCCVYFVFVAQSSHQI--------------------CLALDIDYKLHYHMAI 41
           F++ITQLGFC VY VF+A++  Q+                    C    +D  L  +M  
Sbjct: 155 FLVITQLGFCSVYIVFLAENVKQVHEGFLGSTPIVSNGSDLSHACERRSVD--LRVYMLC 212

Query: 42  MLAPILFTAMIRNLKYIAPISAVANLIMGLGIAAIYYYILQDLPPVSTRNYVGHIQQIPL 101
            L  I+    IR LK +  +S +AN+ M   +  IY Y+++++P       V   ++ PL
Sbjct: 213 FLPLIILLVFIRELKNLFVLSFLANISMAASLVIIYQYVVRNMPDPHNLPIVAGWKKYPL 272

Query: 102 FFGTVIFAFEGIALVLPLQREMKKKKNFNSSFGVLNMGSILIIALMLSMGFFGYLKYGEN 161
           FFGT +FAFEGI +VLPL+ +M++ K F  +   LN+G  ++  L +S+   GY+ + + 
Sbjct: 273 FFGTAVFAFEGIGVVLPLENQMRESKRFPQA---LNIGMAIVTVLYISLATLGYMCFRDE 329

Query: 162 VKGSITLNLSDRKDDPLALVVVGSIGFGILCTYSLQFYVPVAII 205
           +KGSITLNL   +D  L   V     FGI  TYS+QFYVP  II
Sbjct: 330 IKGSITLNLP--QDMWLYQSVKILYSFGIFVTYSIQFYVPAEII 371

Functions as a sodium-independent electroneutral transporter for tryptophan, proline and alanine.

Mus musculus (taxid: 10090)

>sp|Q8K415|S36A2_RAT Proton-coupled amino acid transporter 2 OS=Rattus norvegicus GN=Slc36a2 PE=1 SV=1

 Score =  131 bits (330), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 92/263 (34%), Positives = 150/263 (57%), Gaps = 38/263 (14%)

Query: 2   FVIITQLGFCCVYFVFVAQSSHQICLALD-IDYKLHYHMAIMLAPILFTAM--------- 51
           F+I+TQLGFCCVY VF+A +  Q+  A++      H +  ++L P + + +         
Sbjct: 151 FLIVTQLGFCCVYIVFLADNLKQVVEAVNSTTISCHKNETVVLTPTIDSRLYMLAFLPVL 210

Query: 52  -----IRNLKYIAPISAVANLIMGLGIAAIYYYILQDLPPVSTRNYVGHIQQIPLFFGTV 106
                IRNL+ +   S +AN+ M + +  I  YI+Q +P  S    V   +  PLFFGT 
Sbjct: 211 GLLVFIRNLRVLTIFSLLANVSMLVSLVIIGQYIIQGIPDPSQLPLVASWKTYPLFFGTA 270

Query: 107 IFAFEGIALVLPLQREMKKKKNFNSSFGVLNMGSILIIALMLSMGFFGYLKYGENVKGSI 166
           IF+FE I +VLPL+ +MK  + F +   +L++G  +I  L +++G  GYL++G+++K SI
Sbjct: 271 IFSFESIGVVLPLENKMKDARRFPT---ILSLGMSIITTLYIAIGALGYLRFGDDIKASI 327

Query: 167 TLNLSD---RKDDPLALVVVGSIGFGILCTYSLQFYVPVAIIW----AELEEKYG-PFKH 218
           TLNL +    +   L  VV      GILCT++LQFYVP  II     +++ +++  P   
Sbjct: 328 TLNLPNCWLYQSVKLLYVV------GILCTHALQFYVPAEIIIPLAVSQVSKRWALPV-- 379

Query: 219 PAFGETILRVSLVLLTCKLALVV 241
               +  +R++LV +TC LA+++
Sbjct: 380 ----DLSIRLALVCVTCMLAILI 398

Involved in a pH-dependent electrogenic neuronal transport and sequestration of small amino acids amino acids such as glycine, alanine and proline. Inhibited by sarcosine. Inhibited by L-pipecolic acid, D-pipecolic acid and isonipecotic acid.

Rattus norvegicus (taxid: 10116)

>sp|Q495N2|S36A3_HUMAN Proton-coupled amino acid transporter 3 OS=Homo sapiens GN=SLC36A3 PE=2 SV=2

 Score =  117 bits (294), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 90/259 (34%), Positives = 141/259 (54%), Gaps = 30/259 (11%)

Query: 2   FVIITQLGFCCVYFVFVAQSSHQ----------IC-----LALDIDYKLHYHMAIMLAPI 46
            ++ITQLGFC VYF+F+A +  Q          IC     L L     + ++M I+L  +
Sbjct: 141 LLVITQLGFCSVYFMFMADNLQQMVEKAHVTSNICQPREILTLTPILDIRFYMLIILPFL 200

Query: 47  LFTAMIRNLKYIAPISAVANLIMGLGIAAIYYYILQDLPPVSTRNYVGHIQQIPLFFGTV 106
           +    I+NLK ++  S +AN+     +A I+ YI++ +P  S    + + +   LFFGT 
Sbjct: 201 ILLVFIQNLKVLSVFSTLANITTLGSMALIFEYIMEGIPYPSNLPLMANWKTFLLFFGTA 260

Query: 107 IFAFEGIALVLPLQREMKKKKNFNSSFGVLNMGSILIIALMLSMGFFGYLKYGENVKGSI 166
           IF FEG+ +VLPL+ +MK  + F  SF VL +G  ++I L + +G  GY+K+G + + SI
Sbjct: 261 IFTFEGVGMVLPLKNQMKHPQQF--SF-VLYLGMSIVIILYILLGTLGYMKFGSDTQASI 317

Query: 167 TLNLSDRKDDPLALVVVGSIGFGILCTYSLQFYVPVAII----WAELEEKYGPFKHPAFG 222
           TLNL +     L   V      GI  TY+LQF+VP  II     +++ E +       F 
Sbjct: 318 TLNLPNCW---LYQSVKLMYSIGIFFTYALQFHVPAEIIIPFAISQVSESWA-----LFV 369

Query: 223 ETILRVSLVLLTCKLALVV 241
           +  +R +LV LTC  A+++
Sbjct: 370 DLSVRSALVCLTCVSAILI 388

Homo sapiens (taxid: 9606)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	471
193579964	458	PREDICTED: proton-coupled amino acid tra	0.575	0.591	0.471	1e-63
187123198	486	amino acid transporter [Acyrthosiphon pi	0.490	0.475	0.497	2e-63
350422404	414	PREDICTED: proton-coupled amino acid tra	0.501	0.570	0.495	2e-63
340716878	485	PREDICTED: proton-coupled amino acid tra	0.505	0.490	0.481	3e-62
383858593	474	PREDICTED: proton-coupled amino acid tra	0.501	0.497	0.504	4e-62
345495091	468	PREDICTED: proton-coupled amino acid tra	0.507	0.510	0.493	1e-61
345495099	483	PREDICTED: proton-coupled amino acid tra	0.503	0.490	0.487	2e-61
91094631	493	PREDICTED: similar to amino acid transpo	0.498	0.476	0.518	2e-60
270016446	1108	hypothetical protein TcasGA2_TC004406 [T	0.505	0.214	0.512	5e-60
332024350	474	Proton-coupled amino acid transporter 4	0.501	0.497	0.462	3e-59

>gi|193579964|ref|XP_001951455.1| PREDICTED: proton-coupled amino acid transporter 4-like [Acyrthosiphon pisum]

 Score =  249 bits (637), Expect = 1e-63,   Method: Compositional matrix adjust.
 Identities = 134/284 (47%), Positives = 183/284 (64%), Gaps = 13/284 (4%)

Query: 1   MFVIITQLGFCCVYFVFVAQSSHQICLALDIDYKLHYHMAIMLAPILFTAMIRNLKYIAP 60
           +FVIITQLGFCCVY +FV+ S  Q C        +H HM   L PI+  AMIRNLK+IAP
Sbjct: 141 VFVIITQLGFCCVYILFVSSSIKQFCDEYGTVLDIHIHMIFALVPIMSCAMIRNLKFIAP 200

Query: 61  ISAVANLIMGLGIAAIYYYILQDLPPVSTRNYVGHIQQIPLFFGTVIFAFEGIALVLPLQ 120
           +S  AN+ M +G+  I  Y + DLP +++R  V H  QIPLFFGT I+AFEGI+LVLPLQ
Sbjct: 201 LSTAANISMAIGLGIILSYCVVDLPTLNSRTAVAHWSQIPLFFGTAIYAFEGISLVLPLQ 260

Query: 121 REMKKKKNFNSSFGVLNMGSILIIALMLSMGFFGYLKYGENVKGSITLNLSDRKDDPLAL 180
            EMK    F S+ GVLN+G  ++  ++L+MGF G+ ++G++VKGS+TLNL       L+ 
Sbjct: 261 LEMKTPNRFASTMGVLNVGMTIVTFIILTMGFVGFWRFGDDVKGSLTLNLPPTLI--LSK 318

Query: 181 VVVGSIGFGILCTYSLQFYVPVAIIWAELEEKYGPFKHPAFGETILRVSLVLLTCKLALV 240
           +VVG + F I+CTY+LQFYVPVAI+W  ++EKYGPF+ PA  E +LR  LV  T   A V
Sbjct: 319 IVVGLMVFAIICTYTLQFYVPVAILWPSVQEKYGPFQSPALAEYLLRAVLVFATFLAAEV 378

Query: 241 V------VGSIGFGILCTYSLQFYVPVA--IIWAELEEKYGPFK 276
           +      +  +G  I  T+    + P+   ++W   +E +G F 
Sbjct: 379 IPHLALFISLVG-AIASTFLALIFPPICHMVVWK--DEGFGAFN 419

Source: Acyrthosiphon pisum

Species: Acyrthosiphon pisum

Genus: Acyrthosiphon

Family: Aphididae

Order: Hemiptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|187123198|ref|NP_001119648.1| amino acid transporter [Acyrthosiphon pisum] gi|21464658|emb|CAD29806.1| putative amino acid transporter [Acyrthosiphon pisum]

 Score =  249 bits (637), Expect = 2e-63,   Method: Compositional matrix adjust.
 Identities = 116/233 (49%), Positives = 177/233 (75%), Gaps = 2/233 (0%)

Query: 2   FVIITQLGFCCVYFVFVAQSSHQICLALDIDYKLHYHMAIMLAPILFTAMIRNLKYIAPI 61
           F++ITQLGFCCVY +FV++S  Q+    +I   +H  + I + PI+ +++IR+LK+IA +
Sbjct: 150 FIVITQLGFCCVYILFVSKSIQQMLSWYNIQLDVHVSILITMVPIMISSLIRSLKFIARL 209

Query: 62  SAVANLIMGLGIAAIYYYILQDLPPVSTRNYVGHIQQIPLFFGTVIFAFEGIALVLPLQR 121
           SA+AN+ M +G+  I YY   DLPP+S+R+ + H   IPL+FGT IF+FEGI+LVLPL++
Sbjct: 210 SAIANVCMLVGLVVILYYCTVDLPPLSSRSAIAHWTTIPLYFGTSIFSFEGISLVLPLEQ 269

Query: 122 EMKKKKNFNSSFGVLNMGSILIIALMLSMGFFGYLKYGENVKGSITLNLSDRKDDPLALV 181
           EMKK K F+++FGVLN+G +++ +L++  GF GY ++G+ V+GS+TLNL +  +  L+ V
Sbjct: 270 EMKKPKQFSTAFGVLNVGMVIVTSLIVLTGFMGYWRFGDAVRGSLTLNLPE--EFLLSKV 327

Query: 182 VVGSIGFGILCTYSLQFYVPVAIIWAELEEKYGPFKHPAFGETILRVSLVLLT 234
           V+ S+ FGI+CTY+LQFYVPV I+W ++E+++GPF+ P   +T LRV LVL+T
Sbjct: 328 VISSMMFGIICTYTLQFYVPVEILWPKVEQRFGPFRSPLLWDTGLRVVLVLIT 380

Source: Acyrthosiphon pisum

Species: Acyrthosiphon pisum

Genus: Acyrthosiphon

Family: Aphididae

Order: Hemiptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|350422404|ref|XP_003493154.1| PREDICTED: proton-coupled amino acid transporter 1-like [Bombus impatiens]

 Score =  249 bits (636), Expect = 2e-63,   Method: Compositional matrix adjust.
 Identities = 118/238 (49%), Positives = 165/238 (69%), Gaps = 2/238 (0%)

Query: 1   MFVIITQLGFCCVYFVFVAQSSHQICLALDIDYKLHYHMAIMLAPILFTAMIRNLKYIAP 60
           +F+ ITQLGFCCVYFVF+A++  Q+     I+  +H HMA++L PI+ +  IRNLKY+ P
Sbjct: 103 VFLCITQLGFCCVYFVFIAKNMKQVLDVYGIEMDVHQHMAVILIPIMLSTWIRNLKYLVP 162

Query: 61  ISAVANLIMGLGIAAIYYYILQDLPPVSTRNYVGHIQQIPLFFGTVIFAFEGIALVLPLQ 120
           IS++AN ++  G  A  Y +  DLPP+  R Y+    ++PLFFGTVI++FEGI LVLPL+
Sbjct: 163 ISSLANFLVIAGYVATMYIMCHDLPPIHERRYIADWHELPLFFGTVIYSFEGITLVLPLK 222

Query: 121 REMKKKKNFNSSFGVLNMGSILIIALMLSMGFFGYLKYGENVKGSITLNLSDRKDDPLAL 180
            EMKK  NF+   GVLN+G +++  + ++MGF  YLKYG+ V GS+TLNL  ++  P  +
Sbjct: 223 NEMKKPSNFSKPLGVLNVGMVIVGGMFVAMGFISYLKYGDTVAGSVTLNLQSKEVLPQCI 282

Query: 181 VVVGSIGFGILCTYSLQFYVPVAIIWAELEEKYGPFKHPAFGETILRVSLVLLTCKLA 238
            V  +I   IL TY+LQFYVP+AIIW ++  ++GPFK P F ET+ R S+  LT  LA
Sbjct: 283 QV--AISLSILLTYALQFYVPIAIIWPKIVNRFGPFKWPVFAETVFRSSMCFLTFVLA 338

Source: Bombus impatiens

Species: Bombus impatiens

Genus: Bombus

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|340716878|ref|XP_003396918.1| PREDICTED: proton-coupled amino acid transporter 1-like [Bombus terrestris]

 Score =  245 bits (626), Expect = 3e-62,   Method: Compositional matrix adjust.
 Identities = 119/247 (48%), Positives = 168/247 (68%), Gaps = 9/247 (3%)

Query: 1   MFVIITQLGFCCVYFVFVAQSSHQICLALDIDYKLHYHMAIMLAPILFTAMIRNLKYIAP 60
           +F+ ITQLGFCCVYFVF+A++  Q+     I+  +H HMA++L PI+ +  IRNLKY+ P
Sbjct: 163 VFLCITQLGFCCVYFVFIAKNMKQVLDVYGIEMDVHQHMAVILIPIMLSTWIRNLKYLVP 222

Query: 61  ISAVANLIMGLGIAAIYYYILQDLPPVSTRNYVGHIQQIPLFFGTVIFAFEGIALVLPLQ 120
           IS++AN ++  G  A  Y +  DLPP+  R Y+    ++PLFFGTVI++FEGI LVLPL+
Sbjct: 223 ISSLANFLVTAGYVATMYIMCHDLPPIHERRYIADWHELPLFFGTVIYSFEGITLVLPLK 282

Query: 121 REMKKKKNFNSSFGVLNMGSILIIALMLSMGFFGYLKYGENVKGSITLNLSDRK------ 174
            EMKK  NF+ S GVLN+G +++  + ++MGF  YLKYG+ V GS+TLNL  ++      
Sbjct: 283 NEMKKPSNFSKSLGVLNVGMVIVGGMFVAMGFISYLKYGDAVAGSVTLNLQSKEVVDGKI 342

Query: 175 -DDPLAL--VVVGSIGFGILCTYSLQFYVPVAIIWAELEEKYGPFKHPAFGETILRVSLV 231
             + L+L   +  +I   IL TY+LQFYVP+AIIW ++  ++GPFK P F ET+ R S+ 
Sbjct: 343 IGEHLSLPQCIQVAISLSILLTYALQFYVPIAIIWPKIVNRFGPFKCPVFAETVFRSSMC 402

Query: 232 LLTCKLA 238
            LT  LA
Sbjct: 403 FLTFVLA 409

Source: Bombus terrestris

Species: Bombus terrestris

Genus: Bombus

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|383858593|ref|XP_003704785.1| PREDICTED: proton-coupled amino acid transporter 1-like [Megachile rotundata]

 Score =  245 bits (625), Expect = 4e-62,   Method: Compositional matrix adjust.
 Identities = 120/238 (50%), Positives = 162/238 (68%), Gaps = 2/238 (0%)

Query: 1   MFVIITQLGFCCVYFVFVAQSSHQICLALDIDYKLHYHMAIMLAPILFTAMIRNLKYIAP 60
           +F+ +TQLGFCCVYFVF+A +  Q+     I+  +H HMA++L PI+ +  IRNLKY+ P
Sbjct: 163 VFLCVTQLGFCCVYFVFIATNMQQVLDVYGIEMDVHQHMAVILIPIMLSTWIRNLKYLVP 222

Query: 61  ISAVANLIMGLGIAAIYYYILQDLPPVSTRNYVGHIQQIPLFFGTVIFAFEGIALVLPLQ 120
           IS++AN ++  G  A  Y +  DLPPV  R YV     IPLFFGTVI++FEGI LVLPL+
Sbjct: 223 ISSLANFLVIAGYIATMYIMCHDLPPVHERRYVADWHDIPLFFGTVIYSFEGITLVLPLK 282

Query: 121 REMKKKKNFNSSFGVLNMGSILIIALMLSMGFFGYLKYGENVKGSITLNLSDRKDDPLAL 180
            EMKK  NFN  FGVLN+G +++  + ++MGF  YLKYG+ V GS+TLNL   +  P  +
Sbjct: 283 NEMKKPSNFNKPFGVLNVGMVIVGGMFVAMGFISYLKYGDAVAGSVTLNLESSEVLPQCI 342

Query: 181 VVVGSIGFGILCTYSLQFYVPVAIIWAELEEKYGPFKHPAFGETILRVSLVLLTCKLA 238
            V  +I   IL TY+LQFYVPVAIIW ++  ++GPFK P   ET+ R ++  +T  LA
Sbjct: 343 KV--AISLSILFTYALQFYVPVAIIWPKIVNQFGPFKWPIVAETVFRSAVCFVTFVLA 398

Source: Megachile rotundata

Species: Megachile rotundata

Genus: Megachile

Family: Megachilidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|345495091|ref|XP_001603744.2| PREDICTED: proton-coupled amino acid transporter 1-like [Nasonia vitripennis]

 Score =  243 bits (621), Expect = 1e-61,   Method: Compositional matrix adjust.
 Identities = 119/241 (49%), Positives = 164/241 (68%), Gaps = 2/241 (0%)

Query: 1   MFVIITQLGFCCVYFVFVAQSSHQICLALDIDYKLHYHMAIMLAPILFTAMIRNLKYIAP 60
           +F+ ITQLGFCCVYFVF++ +  Q+     +D  LH HMAIML PIL +  IRNLK + P
Sbjct: 155 LFLCITQLGFCCVYFVFISSNVKQVMGVWGVDLDLHVHMAIMLVPILLSTWIRNLKLLVP 214

Query: 61  ISAVANLIMGLGIAAIYYYILQDLPPVSTRNYVGHIQQIPLFFGTVIFAFEGIALVLPLQ 120
           +S++AN+++  G  A  Y I  DLP +S R YV    Q+PLFFGT I+AFEGIALVLPL+
Sbjct: 215 LSSLANVLIVFGYVATIYVISHDLPAISERRYVADWSQLPLFFGTAIYAFEGIALVLPLK 274

Query: 121 REMKKKKNFNSSFGVLNMGSILIIALMLSMGFFGYLKYGENVKGSITLNLSDRKDDPLAL 180
            EM K KNF+   GVLN+G I++  + +++GF  YL+YGE V GS+TLNL ++  + L+ 
Sbjct: 275 NEMIKPKNFDRPLGVLNVGMIIVGCMFIAIGFLSYLRYGEEVAGSVTLNLPEK--ELLSQ 332

Query: 181 VVVGSIGFGILCTYSLQFYVPVAIIWAELEEKYGPFKHPAFGETILRVSLVLLTCKLALV 240
            +  +I   IL TY+LQFYVP+ I+W E   ++GPF +P  GE + R +  L+T  LA V
Sbjct: 333 CIKLAISLSILLTYALQFYVPIGIMWPEFVHQFGPFNYPVVGEILFRTTFCLITFILAEV 392

Query: 241 V 241
           +
Sbjct: 393 I 393

Source: Nasonia vitripennis

Species: Nasonia vitripennis

Genus: Nasonia

Family: Pteromalidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|345495099|ref|XP_001603709.2| PREDICTED: proton-coupled amino acid transporter 1-like [Nasonia vitripennis]

 Score =  242 bits (618), Expect = 2e-61,   Method: Compositional matrix adjust.
 Identities = 116/238 (48%), Positives = 163/238 (68%), Gaps = 1/238 (0%)

Query: 1   MFVIITQLGFCCVYFVFVAQSSHQICLALDIDYKLHYHMAIMLAPILFTAMIRNLKYIAP 60
           +F+ +TQLGFCCVYFVF++ +  Q+     +D  +H HM I L PIL +  IRNLK++ P
Sbjct: 169 LFLCVTQLGFCCVYFVFISSNMQQVMKVWGVDLDVHVHMVIALIPILLSTWIRNLKFLVP 228

Query: 61  ISAVANLIMGLGIAAIYYYILQDLPPVSTRNYVGHIQQIPLFFGTVIFAFEGIALVLPLQ 120
           +S+VAN ++  G  A  Y +  DLPPVS R Y+    ++PLFFGTVI++FEGI LVLPL+
Sbjct: 229 LSSVANALIISGYIASIYIMCHDLPPVSERRYIADWSKLPLFFGTVIYSFEGITLVLPLK 288

Query: 121 REMKKKKNFNSSFGVLNMGSILIIALMLSMGFFGYLKYGENVKGSITLNLSDRKDDPLAL 180
            EMKK KNF+   GVLN+G +++  + +++GF  YLKYG+ + GS+TLNL + K+D L  
Sbjct: 289 NEMKKPKNFDRPLGVLNVGMVIVGGMFVTIGFLAYLKYGDEIAGSVTLNL-EPKEDILPQ 347

Query: 181 VVVGSIGFGILCTYSLQFYVPVAIIWAELEEKYGPFKHPAFGETILRVSLVLLTCKLA 238
            +  +I   IL TY+LQFYVPVAI+W E   ++GPF +P  GE + R  L ++T  LA
Sbjct: 348 CIKLAISLSILLTYALQFYVPVAIMWPEFVRQFGPFNYPVVGEVLFRTILCIITFILA 405

Source: Nasonia vitripennis

Species: Nasonia vitripennis

Genus: Nasonia

Family: Pteromalidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|91094631|ref|XP_969879.1| PREDICTED: similar to amino acid transporter [Tribolium castaneum]

 Score =  239 bits (611), Expect = 2e-60,   Method: Compositional matrix adjust.
 Identities = 123/237 (51%), Positives = 160/237 (67%), Gaps = 2/237 (0%)

Query: 2   FVIITQLGFCCVYFVFVAQSSHQICLALDIDYKLHYHMAIMLAPILFTAMIRNLKYIAPI 61
           F+ ITQLGFCCVYFVF++++  ++      +  +H+HMAI+L PIL T+++RNLKY+AP 
Sbjct: 177 FLCITQLGFCCVYFVFISENVKKVLDYYGYELDVHFHMAIILLPILCTSLVRNLKYLAPF 236

Query: 62  SAVANLIMGLGIAAIYYYILQDLPPVSTRNYVGHIQQIPLFFGTVIFAFEGIALVLPLQR 121
           S VAN+ M +G+    YY  QDLP  S RNY     Q+PLFFGT +FAFEGI LVLPLQ 
Sbjct: 237 STVANIFMLMGLIITVYYTTQDLPSFSERNYYAEPSQLPLFFGTAVFAFEGIGLVLPLQN 296

Query: 122 EMKKKKNFNSSFGVLNMGSILIIALMLSMGFFGYLKYGENVKGSITLNLSDRKDDPLALV 181
           EM+K  +F   FGVLN+G  ++  L + +G   YLKYGE+++GS+TLNL   K D LA  
Sbjct: 297 EMRKPSDFKKPFGVLNVGMCVVTVLYILIGTLSYLKYGEDIEGSVTLNLP--KGDILAQS 354

Query: 182 VVGSIGFGILCTYSLQFYVPVAIIWAELEEKYGPFKHPAFGETILRVSLVLLTCKLA 238
           V   I  GIL TY+LQFY+ V I++  LE   GPFK+P F E   R  LVL+T  LA
Sbjct: 355 VKIIISLGILLTYALQFYIAVEIMFPTLERMLGPFKYPVFAELSFRSVLVLITFILA 411

Source: Tribolium castaneum

Species: Tribolium castaneum

Genus: Tribolium

Family: Tenebrionidae

Order: Coleoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|270016446|gb|EFA12892.1| hypothetical protein TcasGA2_TC004406 [Tribolium castaneum]

 Score =  238 bits (607), Expect = 5e-60,   Method: Compositional matrix adjust.
 Identities = 123/240 (51%), Positives = 161/240 (67%), Gaps = 2/240 (0%)

Query: 2    FVIITQLGFCCVYFVFVAQSSHQICLALDIDYKLHYHMAIMLAPILFTAMIRNLKYIAPI 61
            F+ ITQLGFCCVYFVF++++  ++      +  +H+HMAI+L PIL T+++RNLKY+AP 
Sbjct: 792  FLCITQLGFCCVYFVFISENVKKVLDYYGYELDVHFHMAIILLPILCTSLVRNLKYLAPF 851

Query: 62   SAVANLIMGLGIAAIYYYILQDLPPVSTRNYVGHIQQIPLFFGTVIFAFEGIALVLPLQR 121
            S VAN+ M +G+    YY  QDLP  S RNY     Q+PLFFGT +FAFEGI LVLPLQ 
Sbjct: 852  STVANIFMLMGLIITVYYTTQDLPSFSERNYYAEPSQLPLFFGTAVFAFEGIGLVLPLQN 911

Query: 122  EMKKKKNFNSSFGVLNMGSILIIALMLSMGFFGYLKYGENVKGSITLNLSDRKDDPLALV 181
            EM+K  +F   FGVLN+G  ++  L + +G   YLKYGE+++GS+TLNL   K D LA  
Sbjct: 912  EMRKPSDFKKPFGVLNVGMCVVTVLYILIGTLSYLKYGEDIEGSVTLNLP--KGDILAQS 969

Query: 182  VVGSIGFGILCTYSLQFYVPVAIIWAELEEKYGPFKHPAFGETILRVSLVLLTCKLALVV 241
            V   I  GIL TY+LQFY+ V I++  LE   GPFK+P F E   R  LVL+T  LA  +
Sbjct: 970  VKIIISLGILLTYALQFYIAVEIMFPTLERMLGPFKYPVFAELSFRSVLVLITFILAEAI 1029

Source: Tribolium castaneum

Species: Tribolium castaneum

Genus: Tribolium

Family: Tenebrionidae

Order: Coleoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|332024350|gb|EGI64549.1| Proton-coupled amino acid transporter 4 [Acromyrmex echinatior]

 Score =  236 bits (601), Expect = 3e-59,   Method: Compositional matrix adjust.
 Identities = 110/238 (46%), Positives = 164/238 (68%), Gaps = 2/238 (0%)

Query: 1   MFVIITQLGFCCVYFVFVAQSSHQICLALDIDYKLHYHMAIMLAPILFTAMIRNLKYIAP 60
           +F+ +TQ GFCCVYFVF++ +  Q+  A  I+  +H HMA++L PI+ +  IRNLKY+ P
Sbjct: 163 VFLCVTQFGFCCVYFVFISTNMKQVLDAHGIEMDVHEHMAVVLIPIMLSTWIRNLKYLVP 222

Query: 61  ISAVANLIMGLGIAAIYYYILQDLPPVSTRNYVGHIQQIPLFFGTVIFAFEGIALVLPLQ 120
           ++++AN +M  G  A  Y +  DLP +  R +V     +PLFFGTVI++FEGI LVLPL 
Sbjct: 223 VTSIANFLMIAGYIATIYIMSYDLPSIHERRFVADWNNLPLFFGTVIYSFEGITLVLPLM 282

Query: 121 REMKKKKNFNSSFGVLNMGSILIIALMLSMGFFGYLKYGENVKGSITLNLSDRKDDPLAL 180
            EMKK  NFN +FGVLN+G +++  + ++MGF  YLKYG++V GS+TLNL+ ++  P  +
Sbjct: 283 NEMKKPSNFNKAFGVLNVGMVIVGVMFVTMGFLSYLKYGDDVAGSVTLNLAPQEILPQCI 342

Query: 181 VVVGSIGFGILCTYSLQFYVPVAIIWAELEEKYGPFKHPAFGETILRVSLVLLTCKLA 238
            +  +I   IL TY+LQFYVP+AI+W  + +++GPF+ P F E + R ++  +T  LA
Sbjct: 343 KI--AISLSILLTYALQFYVPIAIMWPGIVDRFGPFRWPVFTEILFRSTMCFITFILA 398

Source: Acromyrmex echinatior

Species: Acromyrmex echinatior

Genus: Acromyrmex

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	471
FB|FBgn0030816	468	CG16700 [Drosophila melanogast	0.573	0.576	0.405	4.8e-52
FB|FBgn0032036	504	CG13384 [Drosophila melanogast	0.507	0.474	0.435	9.8e-48
FB|FBgn0036116	465	CG7888 [Drosophila melanogaste	0.547	0.554	0.403	5e-44
FB|FBgn0035300	451	CG1139 [Drosophila melanogaste	0.577	0.603	0.366	8.4e-42
FB|FBgn0030817	477	CG4991 [Drosophila melanogaste	0.554	0.547	0.366	1.4e-41
FB|FBgn0036007	500	path "pathetic" [Drosophila me	0.569	0.536	0.376	9.9e-39
ZFIN|ZDB-GENE-061117-1	468	slc36a1 "solute carrier family	0.490	0.493	0.393	1.6e-38
FB|FBgn0033760	474	CG8785 [Drosophila melanogaste	0.549	0.546	0.332	3.4e-38
WB|WBGene00020837	449	T27A1.5 [Caenorhabditis elegan	0.503	0.527	0.356	1e-36
UNIPROTKB|F1NY02	390	SLC36A4 "Uncharacterized prote	0.409	0.494	0.397	1.7e-36

FB|FBgn0030816 CG16700 [Drosophila melanogaster (taxid:7227)]

 Score = 509 (184.2 bits), Expect = 4.8e-52, Sum P(2) = 4.8e-52
 Identities = 114/281 (40%), Positives = 163/281 (58%)

Query:     1 MFVIITQLGFCCVYFVFVAQSSHQICLALDIDYKLHYHMAIMLAPILFTAMIRNLKYIAP 60
             +F+ +TQLGFCC+YFVF++ +  QI  A DID  +H  M +   P+L +++I NLK++ P
Sbjct:   152 IFICVTQLGFCCIYFVFISTNLKQILQAYDIDMNVHLVMLLAFVPVLLSSLITNLKWLTP 211

Query:    61 ISAVANLIMGLGIAAIYYYILQD-LPPVSTRNYVGHIQQIPLFFGTVIFAFEGIALVLPL 119
             +S  AN+ M LG+A   YY L+D LP V  R    +  Q+ LFFGT IFAFEGIALV+PL
Sbjct:   212 VSMFANVCMILGLAITLYYALKDGLPEVEERALWTNGSQLALFFGTAIFAFEGIALVMPL 271

Query:   120 QREMKKKKNFNSSFGVLNMGSILIIALMLSMGFFGYLKYGENVKGSITLNLSDRKDDPLA 179
             +  M+K   F    GVLN+G  L+  + +  G  GY+K+GE V GS+TLNL D     LA
Sbjct:   272 KNAMRKPHQFERPLGVLNVGMFLVSVMFMFAGSVGYMKWGEQVGGSLTLNLGDTI---LA 328

Query:   180 LVVVGSIGFGILCTYSLQFYVPVAIIWAELEEKYGPFKHPAFGETILRVSLVLLTCKLAL 239
               V   +  G+L  Y LQF+V + I+W   ++  G       GE   R  +VL+T  +A 
Sbjct:   329 QAVKLMVSAGVLLGYPLQFFVAIQIMWPNAKQMCGIEGRSLLGELGFRTFMVLVTLAIA- 387

Query:   240 VVVGSIGF-----GILCTYSLQF-YVPVAIIWAELEEKYGP 274
              +V ++G      G LC+ +L   + PV  + +  E   GP
Sbjct:   388 EMVPALGLFISLIGALCSTALALVFPPVIELISRSELNKGP 428

GO:0015495 "gamma-aminobutyric acid:hydrogen symporter activity" evidence=ISS

GO:0008021 "synaptic vesicle" evidence=ISS

GO:0003333 "amino acid transmembrane transport" evidence=ISS

GO:0015171 "amino acid transmembrane transporter activity" evidence=ISS

GO:0022008 "neurogenesis" evidence=IMP

FB|FBgn0032036 CG13384 [Drosophila melanogaster (taxid:7227)]

 Score = 499 (180.7 bits), Expect = 9.8e-48, P = 9.8e-48
 Identities = 108/248 (43%), Positives = 156/248 (62%)

Query:     2 FVIITQLGFCCVYFVFVAQSSHQICLALDIDYKL--HYHMAIMLAPILFTAMIRNLKYIA 59
             F+ ITQ+GFCCVYF+FVA +   +   +D  YK+    ++ IML P++   ++RNLKY+ 
Sbjct:   194 FLFITQIGFCCVYFLFVALNIKDV---MDHYYKMPVQIYLLIMLGPMILLNLVRNLKYLT 250

Query:    60 PISAVANLIMGLGIAAIYYYILQDLPPVSTRNYVGHIQQIPLFFGTVIFAFEGIALVLPL 119
             P+S VA L+   G+A  + Y+L DLP V T   V     +PL+FGT I+AFEGI +VLPL
Sbjct:   251 PVSLVAALLTVAGLAITFSYMLVDLPDVHTVKPVATWATLPLYFGTAIYAFEGIGVVLPL 310

Query:   120 QREMKKKKNFNSSFGVLNMGSILIIALMLSMGFFGYLKYGENVKGSITLNLSDRKDDPLA 179
             +  M+  ++F  + GVLN G +++  L  ++GFFGYLKYGE+V+GSITLNL   + D L+
Sbjct:   311 ENNMRTPEDFGGTTGVLNTGMVIVACLYTAVGFFGYLKYGEHVEGSITLNLP--QGDTLS 368

Query:   180 LVVVGSIGFGILCTYSLQFYVPVAIIWAELEEKYGPFKHPAFGETILRVSLVLLTCKLAL 239
              +V  S+   I  +Y+LQFYVPV I+   +   +   +      T+LRV LV  T  LA 
Sbjct:   369 QLVRISMAVAIFLSYTLQFYVPVNIVEPFVRSHFDTTRAKDLSATVLRVVLVTFTFLLAT 428

Query:   240 VV--VGSI 245
              +  +GSI
Sbjct:   429 CIPNLGSI 436

GO:0015171 "amino acid transmembrane transporter activity" evidence=ISS

GO:0003333 "amino acid transmembrane transport" evidence=ISS

FB|FBgn0036116 CG7888 [Drosophila melanogaster (taxid:7227)]

 Score = 464 (168.4 bits), Expect = 5.0e-44, P = 5.0e-44
 Identities = 109/270 (40%), Positives = 154/270 (57%)

Query:     2 FVIITQLGFCCVYFVFVAQSSHQICLAL-DIDYKLHYHMAIMLAPILFTAMIRNLKYIAP 60
             F++I QLG CCVY VFVA +   I  A+ D    +   M I+L P++    +RNLKY+AP
Sbjct:   151 FLLIYQLGTCCVYVVFVASNIKAIVDAVADTSIDVRLCMIIILLPLILINWVRNLKYLAP 210

Query:    61 ISAVANLIMGLGIAAIYYYILQDLPPVST--RNYVGHIQQIPLFFGTVIFAFEGIALVLP 118
              S +AN I  +    I YYI ++  PV+T  ++  G     PLFFGTV+FA E I ++LP
Sbjct:   211 FSTLANAITMVSFGIICYYIFRE--PVTTEGKDAFGKPSNFPLFFGTVLFALEAIGVILP 268

Query:   119 LQREMKKKKNFNSSFGVLNMGSILIIALMLSMGFFGYLKYGENVKGSITLNLSDRKDDPL 178
             L+ EMK  + F  S GVLN+  +LI+ L + MG FGYL YG  V GSITLN+ +   + L
Sbjct:   269 LENEMKTPQKFGGSCGVLNVSMVLIVFLYVGMGLFGYLNYGSAVLGSITLNMPEH--EVL 326

Query:   179 ALVVVGSIGFGILCTYSLQFYVPVAIIWAE-LEEKYGPFKHPAFGETILRVSLVLLTCKL 237
             ++ V G + F I  T+ L  YV + I W + + ++ G  ++  F E  +R  LVL+T  L
Sbjct:   327 SMCVKGMLAFAIYITHGLACYVAIDITWNDYVAKRLGAQRNALFWEYAVRTGLVLITFLL 386

Query:   238 ALVVVGS---IG-FGILCTYSLQFYVPVAI 263
             A+ +      I  FG LC  +L    P  I
Sbjct:   387 AVAIPNLELFISLFGALCLSALGLAFPALI 416

GO:0015171 "amino acid transmembrane transporter activity" evidence=ISS

GO:0003333 "amino acid transmembrane transport" evidence=ISS

FB|FBgn0035300 CG1139 [Drosophila melanogaster (taxid:7227)]

 Score = 443 (161.0 bits), Expect = 8.4e-42, P = 8.4e-42
 Identities = 103/281 (36%), Positives = 153/281 (54%)

Query:     2 FVIITQLGFCCVYFVFVAQSSHQICLALDIDYKLHYHMAIMLAPILFTAMIRNLKYIAPI 61
             F+     G CCVY VF+A+S  Q+     + + +  HM I++ P+L    I+NLK +AP 
Sbjct:   141 FLAFYHFGICCVYVVFIAESIKQLVDEYLVVWDVRIHMCIIIVPLLLIYSIKNLKLLAPF 200

Query:    62 SAVANLIMGLGIAAIYYYILQDLPPVSTRNYVGHIQQIPLFFGTVIFAFEGIALVLPLQR 121
             S+ ANL++ +G   I YYI ++LPP+S R+      ++P FFGTV+FA E + ++L ++ 
Sbjct:   201 SSAANLLLLVGFGIILYYIFEELPPLSERDPFVAAGKLPTFFGTVLFALEAVGVILAIEE 260

Query:   122 EMKKKKNFNSSFGVLNMGSILIIALMLSMGFFGYLKYGENVKGSITLNLSDRKDDPLALV 181
              M   K+F    G+LN G  +++ L + +GFFGY KYG   +GSITLN+  + + P  +V
Sbjct:   261 NMATPKSFVGPCGILNSGMSIVLGLYVLLGFFGYWKYGNESEGSITLNIP-QSEIPAQVV 319

Query:   182 VVGSIGFGILCTYSLQFYVPVAIIWAELEEKYGPFKHPAFGETILRVSLVLLT--CKLA- 238
              V         +Y+LQ YV   I+W +   K        F E I R  +VLLT  C +A 
Sbjct:   320 KV-FFAITTWISYALQGYVTAHILWDKYLAKRFKETRQTFYELIFRAIIVLLTFGCAVAI 378

Query:   239 --LVVVGSIGFGILCTYSLQFYVPVAI-IWAELEEKYGPFK 276
               L V  S+  G  C   L    PV + I  +  E YGPF+
Sbjct:   379 PDLSVFLSL-VGSFCLSILGLIFPVLLQICVQYTEGYGPFR 418

GO:0015171 "amino acid transmembrane transporter activity" evidence=ISS

GO:0040007 "growth" evidence=IMP

GO:0003333 "amino acid transmembrane transport" evidence=ISS

FB|FBgn0030817 CG4991 [Drosophila melanogaster (taxid:7227)]

 Score = 441 (160.3 bits), Expect = 1.4e-41, P = 1.4e-41
 Identities = 99/270 (36%), Positives = 150/270 (55%)

Query:     1 MFVIITQLGFCCVYFVFVAQSSHQICLALDIDYKLHYHMAIMLAPILFTAMIRNLKYIAP 60
             MF+ +TQ GFC +YFVF+ ++ HQ+     I   +   M I L P +  +++ NLKYI+P
Sbjct:   163 MFLCVTQFGFCAIYFVFITENLHQVLQQNGIVISMSMVMLITLLPAMIPSLMTNLKYISP 222

Query:    61 ISAVANLIMGLGIAAIYYYILQD--LPPVSTRNYVGHIQQIPLFFGTVIFAFEGIALVLP 118
             +S  AN+ +  G+ A       D  +P V  R+      Q+ LFFGT +F++EGIAL+LP
Sbjct:   223 VSLFANVALLFGLIATLTIAFSDGPMPSVGDRHLFTGGAQLALFFGTALFSYEGIALILP 282

Query:   119 LQREMKKKKNFNSSFGVLNMGSILIIALMLSMGFFGYLKYGENVKGSITLNLSDRKDDPL 178
             L+  M++ + F++ FGVLN       AL +  GF  Y+++GE V GSITLNL    ++  
Sbjct:   283 LRNSMRRPEKFSTRFGVLNSTMFFTTALFIFTGFVSYVRWGEEVAGSITLNLV--VEEVF 340

Query:   179 ALVVVGSIGFGILCTYSLQFYVPVAIIWAELEEKYG-PFKHPAFGETILRVSLVLLTCKL 237
             + VV      G+   Y +QF+V + I+W  L+       K+P   +  LR  +V++T  +
Sbjct:   341 SQVVKVIAALGVFLGYPIQFFVMIKILWPPLKRSNNCTQKYPITSQVCLRFFMVMMTFGV 400

Query:   238 ALVVVGSIGF----GILCTYSLQFYVPVAI 263
             ALVV     F    G LC+  L F +PV I
Sbjct:   401 ALVVPKLNLFISLIGALCSTCLAFVIPVLI 430

GO:0003333 "amino acid transmembrane transport" evidence=ISS

GO:0015171 "amino acid transmembrane transporter activity" evidence=ISS

FB|FBgn0036007 path "pathetic" [Drosophila melanogaster (taxid:7227)]

 Score = 414 (150.8 bits), Expect = 9.9e-39, P = 9.9e-39
 Identities = 105/279 (37%), Positives = 146/279 (52%)

Query:     3 VIITQLGFCCVYFVFVAQSSHQ-ICLALDIDYKLHYHMAIMLAPILFTAMIRNLKYIAPI 61
             + +T  G C VY V VA +  Q I         L   + IML P++  A + NLKY+AP+
Sbjct:   186 LFLTYFGTCSVYTVIVASNFEQLISYWTGTAVSLRMLICIMLVPLILIAWVPNLKYLAPV 245

Query:    62 SAVANLIMGLGIAAIYYYILQDLPPVSTRNYVGHIQQIPLFFGTVIFAFEGIALVLPLQR 121
             S VAN+ MGLG+   +YY++QDLPPV  R  V     +P FF   IFA E I +V+PL+ 
Sbjct:   246 SMVANVFMGLGLGITFYYLVQDLPPVEERESVVW-STLPQFFSITIFAMEAIGVVMPLEN 304

Query:   122 EMKKKKNFNSSFGVLNMGSILIIALMLSMGFFGYLKYGENVKGSITLNLSDRKDDPLALV 181
              MK  ++F    GVL+ G   +  + + +GF GYL+YG     SITLNL   ++ P   V
Sbjct:   305 NMKTPQSFLGICGVLSQGMSGVTLIYMLLGFLGYLRYGSATGESITLNLPI-EEWPAQTV 363

Query:   182 VVGSIGFGILCTYSLQFYVPVAIIWAELEEKYGPFKHPAFGETILRVSLVLLTCKLALVV 241
              V  I   + CT+ LQF+V + IIW  ++EK    K P     +LR  LV     LA+ V
Sbjct:   364 KV-LISLAVYCTFGLQFFVCLEIIWDGIKEKCK--KRPTLVNYVLRTVLVTAAVVLAVAV 420

Query:   242 --VGS-IGF-GILCTYSLQFYVPVAI-IWAELEEKYGPF 275
               +G  +G  G  C   L    PV I +    E  +G +
Sbjct:   421 PTIGPFMGLIGAFCFSILGLIFPVVIELIVHWESGFGKY 459

GO:0015171 "amino acid transmembrane transporter activity" evidence=ISS;NAS

GO:0040008 "regulation of growth" evidence=NAS

GO:0040007 "growth" evidence=IMP

GO:0003333 "amino acid transmembrane transport" evidence=ISS

ZFIN|ZDB-GENE-061117-1 slc36a1 "solute carrier family 36 (proton/amino acid symporter), member 1" [Danio rerio (taxid:7955)]

 Score = 412 (150.1 bits), Expect = 1.6e-38, P = 1.6e-38
 Identities = 102/259 (39%), Positives = 145/259 (55%)

Query:     1 MFVIITQLGFCCVYFVFVAQSSHQI----------C----LALDI-DYKLHYHMAIMLAP 45
             +F+ ITQLGFCCVYFVF++ +  Q+          C     A+ +  Y    +M   L  
Sbjct:   141 LFLNITQLGFCCVYFVFLSDNVKQVVETANATTGNCHNNETAVPVPSYDSRLYMVFFLPF 200

Query:    46 ILFTAMIRNLKYIAPISAVANLIMGLGIAAIYYYILQDLPPVSTRNYVGHIQQIPLFFGT 105
             I+    IRNLKY+AP+S  AN+ M   +  IYYY L ++P        G     PLFFGT
Sbjct:   201 IILLVFIRNLKYLAPLSFAANICMCASLVLIYYYCLTNIPNPINLPLAGRGADYPLFFGT 260

Query:   106 VIFAFEGIALVLPLQREMKKKKNFNSSFGVLNMGSILIIALMLSMGFFGYLKYGENVKGS 165
              IFAFEGI +VLPL+ +M+  +NF     VL +G  ++  L +S+G  GY+ +GE ++GS
Sbjct:   261 AIFAFEGIGVVLPLENKMQNPRNFTK---VLYLGMGIVTFLYISLGTIGYIGFGEEIRGS 317

Query:   166 ITLNLSDRKDDPLALV--VVGSI-GFGILCTYSLQFYVPVAIIWAELEEKYGPFKHPAFG 222
             ITLNL      PL  +  +V  +  FGI  TY+LQFYV   I+      + GP +     
Sbjct:   318 ITLNL------PLCWLYQIVKLLYSFGIYITYALQFYVSAEILIPPAVARCGP-RWALMV 370

Query:   223 ETILRVSLVLLTCKLALVV 241
             +  +RV+LV LTC LA+++
Sbjct:   371 DLSIRVALVGLTCALAILI 389

GO:0016020 "membrane" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

FB|FBgn0033760 CG8785 [Drosophila melanogaster (taxid:7227)]

 Score = 409 (149.0 bits), Expect = 3.4e-38, P = 3.4e-38
 Identities = 92/277 (33%), Positives = 153/277 (55%)

Query:     3 VIITQLGFCCVYFVFVAQSSHQIC-LALDIDYKLHYHMAIMLAPILFTAMIRNLKYIAPI 61
             ++ T     CVY VF+A S H +    L I++ +  ++A+ + P L    IR+LK++ P 
Sbjct:   162 LMATYYAAACVYIVFIATSFHDVINYDLKINWDVRIYIALTVIPCLLIGQIRDLKWLVPF 221

Query:    62 SAVANLIMGLGIAAIYYYILQDLPPVSTRNYVGHIQQIPLFFGTVIFAFEGIALVLPLQR 121
             S +AN+ + +  A   YY+  +    S +  +     IPLFF TVIFA EGI +V+P++ 
Sbjct:   222 SMMANIFIVVTFAITLYYMFDEPLVYSDKPLIAKAAHIPLFFATVIFAMEGIGVVMPVEN 281

Query:   122 EMKKKKNFNSSFGVLNMGSILIIALMLSMGFFGYLKYGENVKGSITLNLSDRK--DDPLA 179
              M+K ++F    GVLN+  + +++L   +GFFGY+++G+ V+GSITLNL +     D   
Sbjct:   282 SMRKPQHFLGCPGVLNIAMVTVVSLYAIIGFFGYVRFGDQVRGSITLNLPEGAWLGDTAK 341

Query:   180 LVVVGSIGFGILCTYSLQFYVPVAIIWAELEEKYGPFKHPAFGETILRVSLVLLTCKLAL 239
             L++       IL T+ LQFYVP  I+W ++  K+ P KH    + +LR  ++LL+  +A 
Sbjct:   342 LLMA----VAILFTFGLQFYVPNEILWRKISHKFSPEKHN-ITQILLRSGIILLSGGVAA 396

Query:   240 VV---------VGSIGFGILCTYSLQFYVPVAIIWAE 267
              +         VG++ F +L  +   F V    +W +
Sbjct:   397 AIPNLEPFISLVGAVFFSLLGIFVPSF-VETVYLWPD 432

GO:0003333 "amino acid transmembrane transport" evidence=ISS

GO:0015171 "amino acid transmembrane transporter activity" evidence=ISS

WB|WBGene00020837 T27A1.5 [Caenorhabditis elegans (taxid:6239)]

 Score = 395 (144.1 bits), Expect = 1.0e-36, P = 1.0e-36
 Identities = 91/255 (35%), Positives = 145/255 (56%)

Query:     3 VIITQLGFCCVYFVFVAQSSHQICLALDIDYKLHYH----MAIMLAPILFTAMIRNLKYI 58
             + + Q GFCCVYFVF+A +  Q     D    +H      +A++L PI     IR LK +
Sbjct:   138 MFVAQFGFCCVYFVFMADNLKQF---FDQTSSIHISQAGWIALLLIPISALCTIRELKAL 194

Query:    59 APISAVANLIMGLGIAAIYYYILQDLPPVSTRNYVGHIQQIPLFFGTVIFAFEGIALVLP 118
             AP++AVAN +  + +  +   +  D  P+ +    G ++ +PLFFGTV+FAFEG+A+VLP
Sbjct:   195 APLAAVANFVYIIAVVIVLADLFSDWQPLDSLPAFGAVENLPLFFGTVMFAFEGVAVVLP 254

Query:   119 LQREMKKKKNFNSSFGVLNMGSILIIALMLSMGFFGYLKYGENVKGSITLNLSDRKDDPL 178
             ++ +M +  +F +  GVLN   IL++ + +++GFFG+L+YG ++K ++TLNL      P 
Sbjct:   255 IENQMNEPIHFITPNGVLNTSCILVLLVYMTVGFFGFLRYGNDIKDTLTLNLPQT---PF 311

Query:   179 ALVVVGSIGFGILCTYSLQFYVPVAII--WAE---LEEKYGPFKHPA-FGETILRVSLVL 232
                +       IL +Y LQFYVP+  +  W +   +E K  P  +   FG  +L  ++  
Sbjct:   312 YQAIKVMFVLCILVSYPLQFYVPMERVEKWIKRKVVEAKQEPMIYAIRFGGVLLTCAMAQ 371

Query:   233 LTCKLALVV--VGSI 245
             L   LAL +  VGS+
Sbjct:   372 LIPHLALFISLVGSV 386

GO:0016021 "integral to membrane" evidence=IEA

UNIPROTKB|F1NY02 SLC36A4 "Uncharacterized protein" [Gallus gallus (taxid:9031)]

 Score = 328 (120.5 bits), Expect = 1.7e-36, Sum P(2) = 1.7e-36
 Identities = 83/209 (39%), Positives = 122/209 (58%)

Query:    35 LHYHMAIMLAPILFTAMIRNLKYIAPISAVANLIMGLGIAAIYYYILQDLP-PVSTRNYV 93
             L  +M   L  ++    IR+LK ++ +S +ANL M + +  IY YI++D+  P      V
Sbjct:   190 LRIYMLCFLPFMILLVFIRDLKSLSFLSLLANLSMAVSLVIIYQYIVRDIADPRKLPPMV 249

Query:    94 GHIQQIPLFFGTVIFAFEGIALVLPLQREMKKKKNFNSSFGVLNMGSILIIALMLSMGFF 153
             G  ++ PLFFGT +FAFEGI +VLPL+  MK    F  +   LN+G  +++ L +S+   
Sbjct:   250 GW-KKYPLFFGTAVFAFEGIGVVLPLENRMKDTTRFPLA---LNIGMGIVMTLYISLATL 305

Query:   154 GYLKYGENVKGSITLNLSDRKDDPLALVVVGSIGFGILCTYSLQFYVPVAII----WAEL 209
             GYL++G+++KGSITLNL   +D  L   V     FGI  TYS+QFYVP  I+     + +
Sbjct:   306 GYLRFGDDIKGSITLNLP--QDQWLYQSVKILYSFGIFVTYSIQFYVPAEILIPAATSRV 363

Query:   210 EEKYGPFKHPAFGETILRVSLVLLTCKLA 238
             E+K+   K P   E ++R  LV  TCK A
Sbjct:   364 EQKW---KLPC--ELVVRALLVCSTCKYA 387

GO:0016021 "integral to membrane" evidence=IEA

GO:0015808 "L-alanine transport" evidence=IEA

GO:0015824 "proline transport" evidence=IEA

GO:0015827 "tryptophan transport" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database

ID	Length	Definition	E-value
Query	471
pfam01490	406	pfam01490, Aa_trans, Transmembrane amino acid tran	1e-30
pfam01490	406	pfam01490, Aa_trans, Transmembrane amino acid tran	5e-19
COG0814	415	COG0814, SdaC, Amino acid permeases [Amino acid tr	0.001
COG0814	415	COG0814, SdaC, Amino acid permeases [Amino acid tr	0.002

>gnl|CDD|216528 pfam01490, Aa_trans, Transmembrane amino acid transporter protein

 Score =  122 bits (307), Expect = 1e-30
 Identities = 64/250 (25%), Positives = 106/250 (42%), Gaps = 16/250 (6%)

Query: 4   IITQLGFCCVYFVFVA----QSSHQICLALDIDYKLHYHMAIMLAPILFTAMIRNLKYIA 59
           ++   G C  Y +F                 I   L Y + I     +  + I NL  ++
Sbjct: 93  LVNLFGVCISYLIFAGDNLPAIFDSFFDTCHI--SLVYFIIIFGLIFIPLSFIPNLSALS 150

Query: 60  PISAVANLIMGLGIAAIYY---YILQDLPPVSTR--NYVGHIQQIPLFFGTVIFAFEGIA 114
            +S VA +     +  +       +     V +        + ++ L  G ++FAFEG A
Sbjct: 151 ILSLVAAVSSLYIVILVLSVAELGVLTAQGVGSLGAKTNIKLARLFLAIGIIVFAFEGHA 210

Query: 115 LVLPLQREMKKKKNFNSSFGVLNMGSILIIALMLSMGFFGYLKYGENVKGSITLNLSDRK 174
           ++LP+Q  MK    F +   VL    I++  L + +G  GYL +G NVKG+I LNL   K
Sbjct: 211 VLLPIQNTMKSPSKFKAMTKVLLTAIIIVTVLYILVGLVGYLAFGNNVKGNILLNLP--K 268

Query: 175 DDPLALVVVGSIGFGILCTYSLQFYVPVAIIWAELEEKYGPFKHPAFGET---ILRVSLV 231
            D L  +    +   +L +Y LQ +    I+   L  K    KH    +    ++R  LV
Sbjct: 269 SDWLIDIANLLLVLHLLLSYPLQAFPIRQIVENLLFRKGASGKHNPKSKLLRVVIRSGLV 328

Query: 232 LLTCKLALVV 241
           ++T  +A+ V
Sbjct: 329 VITYLIAISV 338

This transmembrane region is found in many amino acid transporters including UNC-47 and MTR. UNC-47 encodes a vesicular amino butyric acid (GABA) transporter, (VGAT). UNC-47 is predicted to have 10 transmembrane domains. MTR is a N system amino acid transporter system protein involved in methyltryptophan resistance. Other members of this family include proline transporters and amino acid permeases. Length = 406

>gnl|CDD|216528 pfam01490, Aa_trans, Transmembrane amino acid transporter protein

 Score = 88.5 bits (220), Expect = 5e-19
 Identities = 41/146 (28%), Positives = 67/146 (45%), Gaps = 5/146 (3%)

Query: 318 DIDYKLHYHMAIMLAPILFTAMIRNLKYIAPISAVANLIMGLGIAAIYY---YILQDLPP 374
                L Y + I     +  + I NL  ++ +S VA +     +  +       +     
Sbjct: 121 TCHISLVYFIIIFGLIFIPLSFIPNLSALSILSLVAAVSSLYIVILVLSVAELGVLTAQG 180

Query: 375 VSTR--NYVGHIQQIPLFFGTVIFAFEGIALVLPLQREMKKKKNFNSSFGVLNMGSILII 432
           V +        + ++ L  G ++FAFEG A++LP+Q  MK    F +   VL    I++ 
Sbjct: 181 VGSLGAKTNIKLARLFLAIGIIVFAFEGHAVLLPIQNTMKSPSKFKAMTKVLLTAIIIVT 240

Query: 433 ALMLSMGFFGYLKYGENVKGSITLNL 458
            L + +G  GYL +G NVKG+I LNL
Sbjct: 241 VLYILVGLVGYLAFGNNVKGNILLNL 266

This transmembrane region is found in many amino acid transporters including UNC-47 and MTR. UNC-47 encodes a vesicular amino butyric acid (GABA) transporter, (VGAT). UNC-47 is predicted to have 10 transmembrane domains. MTR is a N system amino acid transporter system protein involved in methyltryptophan resistance. Other members of this family include proline transporters and amino acid permeases. Length = 406

>gnl|CDD|223884 COG0814, SdaC, Amino acid permeases [Amino acid transport and metabolism]

 Score = 40.7 bits (96), Expect = 0.001
 Identities = 25/179 (13%), Positives = 56/179 (31%), Gaps = 10/179 (5%)

Query: 1   MFVIITQLGFCCVYFVFVAQSSHQICLALDIDYKLHYHMAIML--APILFTAMIRN---L 55
           +       G    Y V +                L   +  ++    + F + +     L
Sbjct: 92  LSYFFALYGLLVAYIVGIGNLLASFLGNQFGLNPLPRKLGSLIFALVLAFLSWLGTLAVL 151

Query: 56  KYIAPISAVANLIMGLGIAAIYYYILQDLPPVSTRNYVGHIQQ--IPLFFGTVIFAFEGI 113
           K  + +      ++ L +  +Y     +   +             + L     +F+F   
Sbjct: 152 KITSLLVFG--KVIYLVLLVVYLIPHWNPANLFALPSASQSFWKYLLLAIPVFVFSFGFH 209

Query: 114 ALVLPLQREMKKKKNFNSSFGVLNMGSILIIALMLSMGFFGYLKYGENVKGSITLNLSD 172
             +  L   M+K          + +GS++ + L + +GFF +  +G  V G+I      
Sbjct: 210 GNIPSLVNYMRKNSKKAVRK-AILIGSLIALVLYILVGFFVFGCFGSLVFGNILAAKEQ 267

Length = 415

>gnl|CDD|223884 COG0814, SdaC, Amino acid permeases [Amino acid transport and metabolism]

 Score = 39.9 bits (94), Expect = 0.002
 Identities = 23/135 (17%), Positives = 51/135 (37%), Gaps = 5/135 (3%)

Query: 328 AIMLAPILFTAMIRNLKYIAPISAVANLIMGLGIAAIYYYILQDLPPVSTRNYVGHIQQ- 386
           A++LA + +   +  LK  + +      ++ L +  +Y     +   +            
Sbjct: 136 ALVLAFLSWLGTLAVLKITSLLVFG--KVIYLVLLVVYLIPHWNPANLFALPSASQSFWK 193

Query: 387 -IPLFFGTVIFAFEGIALVLPLQREMKKKKNFNSSFGVLNMGSILIIALMLSMGFFGYLK 445
            + L     +F+F     +  L   M+K          + +GS++ + L + +GFF +  
Sbjct: 194 YLLLAIPVFVFSFGFHGNIPSLVNYMRKNSKKAVRK-AILIGSLIALVLYILVGFFVFGC 252

Query: 446 YGENVKGSITLNLSD 460
           +G  V G+I      
Sbjct: 253 FGSLVFGNILAAKEQ 267

Length = 415

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	471
KOG1304|consensus	449		100.0
PTZ00206	467	amino acid transporter; Provisional	100.0
KOG1303|consensus	437		100.0
PF01490	409	Aa_trans: Transmembrane amino acid transporter pro	100.0
PLN03074	473	auxin influx permease; Provisional	100.0
KOG4303|consensus	524		99.97
KOG1304|consensus	449		99.96
KOG1305|consensus	411		99.95
KOG1303|consensus	437		99.79
PTZ00206	467	amino acid transporter; Provisional	99.68
PF01490	409	Aa_trans: Transmembrane amino acid transporter pro	99.67
PLN03074	473	auxin influx permease; Provisional	99.66
KOG4303|consensus	524		99.66
COG0814	415	SdaC Amino acid permeases [Amino acid transport an	99.62
KOG1305|consensus	411		99.42
COG0814	415	SdaC Amino acid permeases [Amino acid transport an	99.01
TIGR00837	381	araaP aromatic amino acid transport protein. aroma	99.0
PF03222	394	Trp_Tyr_perm: Tryptophan/tyrosine permease family;	98.52
PRK10483	414	tryptophan permease; Provisional	98.16
PRK15132	403	tyrosine transporter TyrP; Provisional	98.07
TIGR00814	397	stp serine transporter. The HAAAP family includes	98.03
PRK09664	415	tryptophan permease TnaB; Provisional	97.81
PRK13629	443	threonine/serine transporter TdcC; Provisional	97.45
TIGR00909	429	2A0306 amino acid transporter.	97.1
PRK11021	410	putative transporter; Provisional	97.04
PRK10197	446	gamma-aminobutyrate transporter; Provisional	96.54
PF13520	426	AA_permease_2: Amino acid permease; PDB: 3NCY_A 3G	96.52
PRK10249	458	phenylalanine transporter; Provisional	96.51
TIGR01773	452	GABAperm gamma-aminobutyrate permease. GabP is hig	96.44
PRK10655	438	potE putrescine transporter; Provisional	96.43
TIGR00906	557	2A0303 cationic amino acid transport permease.	96.38
PRK10238	456	aromatic amino acid transporter; Provisional	96.37
TIGR03813	474	put_Glu_GABA_T putative glutamate/gamma-aminobutyr	96.36
PRK10435	435	cadB lysine/cadaverine antiporter; Provisional	96.28
TIGR03810	468	arg_ornith_anti arginine/ornithine antiporter. Mem	96.25
KOG1287|consensus	479		96.18
PRK10746	461	putative transport protein YifK; Provisional	96.06
TIGR00837	381	araaP aromatic amino acid transport protein. aroma	96.02
TIGR00908	442	2A0305 ethanolamine permease. The three genes used	95.91
PRK10644	445	arginine:agmatin antiporter; Provisional	95.91
PRK15049	499	L-asparagine permease; Provisional	95.88
PRK11049	469	D-alanine/D-serine/glycine permease; Provisional	95.8
TIGR00905	473	2A0302 transporter, basic amino acid/polyamine ant	95.62
TIGR03428	475	ureacarb_perm permease, urea carboxylase system. A	95.45
TIGR00910	507	2A0307_GadC glutamate:gamma-aminobutyrate antiport	95.45
PRK11357	445	frlA putative fructoselysine transporter; Provisio	95.44
PRK10580	457	proY putative proline-specific permease; Provision	95.41
COG0531	466	PotE Amino acid transporters [Amino acid transport	95.37
TIGR00930	953	2a30 K-Cl cotransporter.	95.35
PRK11387	471	S-methylmethionine transporter; Provisional	95.34
TIGR00913	478	2A0310 amino acid permease (yeast).	95.25
TIGR00911	501	2A0308 L-type amino acid transporter.	94.62
PRK15238	496	inner membrane transporter YjeM; Provisional	94.51
TIGR00907	482	2A0304 amino acid permease (GABA permease).	94.5
PRK10836	489	lysine transporter; Provisional	94.31
PRK11021	410	putative transporter; Provisional	93.91
TIGR00912	359	2A0309 spore germination protein (amino acid perme	92.78
KOG1286|consensus	554		91.82
TIGR00906	557	2A0303 cationic amino acid transport permease.	91.79
TIGR00909	429	2A0306 amino acid transporter.	90.93
TIGR02358	386	thia_cytX probable hydroxymethylpyrimidine transpo	90.02
PF13520	426	AA_permease_2: Amino acid permease; PDB: 3NCY_A 3G	88.15
KOG1289|consensus	550		87.21
PRK10435	435	cadB lysine/cadaverine antiporter; Provisional	87.01
COG1113	462	AnsP Gamma-aminobutyrate permease and related perm	86.99
PRK11357	445	frlA putative fructoselysine transporter; Provisio	85.86
TIGR00912	359	2A0309 spore germination protein (amino acid perme	85.8
COG1457	442	CodB Purine-cytosine permease and related proteins	84.72
PF03222	394	Trp_Tyr_perm: Tryptophan/tyrosine permease family;	83.62
TIGR00911	501	2A0308 L-type amino acid transporter.	83.34
COG0531	466	PotE Amino acid transporters [Amino acid transport	82.9
PRK10483	414	tryptophan permease; Provisional	82.39
PRK10655	438	potE putrescine transporter; Provisional	82.39
PF00324	478	AA_permease: Amino acid permease; InterPro: IPR004	82.35
PRK10197	446	gamma-aminobutyrate transporter; Provisional	82.29
COG0833	541	LysP Amino acid transporters [Amino acid transport	82.29
TIGR00814	397	stp serine transporter. The HAAAP family includes	81.87
PRK15132	403	tyrosine transporter TyrP; Provisional	81.81
TIGR00910	507	2A0307_GadC glutamate:gamma-aminobutyrate antiport	81.17
TIGR00908	442	2A0305 ethanolamine permease. The three genes used	80.43

>KOG1304|consensus

Probab=100.00  E-value=2.9e-50  Score=396.89  Aligned_cols=279  Identities=42%  Similarity=0.676  Sum_probs=262.9

Q ss_pred             EEeeeecccchhhHHhhHhhHHHHHHhhc-cCcchHHHHHHHHHHHHHHHhhccccchhhHHHHHHHHHHHHhheeeeee
Q psy14360          2 FVIITQLGFCCVYFVFVAQSSHQICLALD-IDYKLHYHMAIMLAPILFTAMIRNLKYIAPISAVANLIMGLGIAAIYYYI   80 (471)
Q Consensus         2 ~i~~~~~G~~~~y~i~~~~~l~~~~~~~~-~~~~~~~~~~i~~~~~~pl~~~~~l~~l~~~S~~~~~~~~~~~~~v~~~~   80 (471)
                      +++++|+|.|++|+++++|+++++.+... .+++.+.|+++.+++.+|++++||+|+|+++|.+|.++.+++.+++++|.
T Consensus       145 ~L~i~QlGfc~vY~VFva~nl~~i~~~~~~~~~s~~~~i~~~~~~~lll~~Ir~Lk~Lsp~Sl~Anv~~~~g~~ii~~y~  224 (449)
T KOG1304|consen  145 FLVITQLGFCCVYLVFVATNLKQIVDEHSPGVLSVRLYILIQLPPLLLLNLIRNLKILSPFSLFANVFILVGLAIIMYYL  224 (449)
T ss_pred             HHHHHHhchhhEEeeeHHhhHHHHHhccCCCCccHHHHHHHHHHHHHHHHHHHhhHHhhHHHHHHHHHHHHHHHHHHHHH
Confidence            46789999999999999999999999433 67899999999999999999999999999999999999999999999999


Q ss_pred             cccCCCCCCCCccccccchhHHHHHHHHhhccceeeecchhhcccccCCCcccchhhhHHHHHHHHHHHHhhhhhhcccC
Q psy14360         81 LQDLPPVSTRNYVGHIQQIPLFFGTVIFAFEGIALVLPLQREMKKKKNFNSSFGVLNMGSILIIALMLSMGFFGYLKYGE  160 (471)
Q Consensus        81 ~~~~~~~~~~~~~~~~~~~~~~~g~~~faf~~~~~~~~i~~~m~~p~~~~~~~~v~~~s~~~~~~~Y~~~g~~gY~~fG~  160 (471)
                      +++.++.++.+.+.++++++.++|+.+|||+|++++.|+|++||+|++|...+|+++.+|.+++++|+.+|++||++|||
T Consensus       225 ~~~~~~~~~~~~~~~~~~~~lf~GtaifafEGig~VLPlEn~Mk~P~~F~g~~gVLn~~M~~V~~ly~~~Gf~GYl~fG~  304 (449)
T KOG1304|consen  225 VQDLPPTSDLPAVTGWSGLPLFFGTAIFAFEGIGMVLPLENSMKKPQKFPGPFGVLNLGMGIVTLLYIFLGFFGYLAFGD  304 (449)
T ss_pred             HhccCCccccccccchhhhHHHHHHHHHHhccceEEEehhhcccChhhcCCccchHHHHHHHHHHHHHHHHHHHHhhccc
Confidence            99999888999988899999999999999999999999999999999999666699999999999999999999999999


Q ss_pred             ccccceeeecCCCCCChHHHHHHHHHHHHHHHhhccccchhHHHHHHHHhhhcCCCChhhHHHHHHHHHHHHHHHHHHHh
Q psy14360        161 NVKGSITLNLSDRKDDPLALVVVGSIGFGILCTYSLQFYVPVAIIWAELEEKYGPFKHPAFGETILRVSLVLLTCKLALV  240 (471)
Q Consensus       161 ~~~~~il~nl~~~~~~~~~~v~~~~~~l~l~~s~pl~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~iA~~  240 (471)
                      ++++.|++|+|+   +++.+.+|+++++++++|||||+||+.|++|+.+.++.++++ +++..+.+|..++.+++++|..
T Consensus       305 ~v~~sITLNLP~---~~l~~~Vkl~~ai~I~ls~pLQ~yv~~eIi~~~i~~k~~~~~-~~~~~~~~R~~lVllt~~iA~~  380 (449)
T KOG1304|consen  305 DVKGSITLNLPQ---EILSQTVKLLLAIAIFLTYPLQFYVPIEIIEPGIRKKFSENR-KKLLEYALRVFLVLLTFLIAVA  380 (449)
T ss_pred             cccceEEecCCc---cHHHHHHHHHHHHHHHHcCchhhhhhHHHHHHhHHHhcCcch-hHHHHHHHHHHHHHHHHHHHHH
Confidence            999999999998   899999999999999999999999999999999988877555 4589999999999999999999


Q ss_pred             hcch----hhhhhhhhhhhHhhhhhHHHHhhh-ccccCccccccccccc
Q psy14360        241 VVGS----IGFGILCTYSLQFYVPVAIIWAEL-EEKYGPFKHPAFVPAS  284 (471)
Q Consensus       241 ip~~----slvGs~~~~~l~fi~P~l~~l~~~-~~~~g~~~~~~~~~~~  284 (471)
                      +||+    +|+||++++.+++++|++++++.+ +++.|+.+|+.+.+..
T Consensus       381 iPnL~~fisLVGs~~~s~L~li~P~liel~~~~~~~~~~~~~~~~~ni~  429 (449)
T KOG1304|consen  381 VPNLALFISLVGSVSCSLLALIFPPLIELITFYPEGKGRFMWKLIKNIV  429 (449)
T ss_pred             CCcHHhhHHHHHHHHHHHHHHHccHHHHHHHhcccccCceehHHHHHHH
Confidence            9998    999999999999999999999999 6766888888888754

>PTZ00206 amino acid transporter; Provisional

Probab=100.00  E-value=2.1e-36  Score=312.11  Aligned_cols=258  Identities=16%  Similarity=0.173  Sum_probs=209.4

Q ss_pred             EeeeecccchhhHHhhHhhHHHHHHhhc-cC-----cchH-HHHHHHHHHHHHHHhhccccchhhHHHHHHHHHHHHhhe
Q psy14360          3 VIITQLGFCCVYFVFVAQSSHQICLALD-ID-----YKLH-YHMAIMLAPILFTAMIRNLKYIAPISAVANLIMGLGIAA   75 (471)
Q Consensus         3 i~~~~~G~~~~y~i~~~~~l~~~~~~~~-~~-----~~~~-~~~~i~~~~~~pl~~~~~l~~l~~~S~~~~~~~~~~~~~   75 (471)
                      ++++++|+|++|++++||+++++++... ++     .+.| .+..++.++++|++++|++++|+++|.+|++++++.++.
T Consensus       143 ~~~~~~G~cv~YlIiigd~l~~~l~~~~~~~~~~~~~~~r~~~~~i~~~i~lPLs~~r~i~~L~~~S~i~~~~i~~~vi~  222 (467)
T PTZ00206        143 RAFHGFSACVAYVISVGDILSATLKGTNAPDFLKQKSGNRLLTSLMWLCFMLPLVIPRHIDSLRYVSTIAVSFMVYLVIV  222 (467)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhccCCccchhhhccCcEEeeeehhhhHhhhcccccchHHHHHHHHHHHHHHHHHHhh
Confidence            4568999999999999999999986532 11     1122 334556778899999999999999999999988877766


Q ss_pred             eeeeecc-cCCCC-C----------CCCccccccchhHHHHHHHHhhccceeeecchhhcccc--cCCCcccchhhhHHH
Q psy14360         76 IYYYILQ-DLPPV-S----------TRNYVGHIQQIPLFFGTVIFAFEGIALVLPLQREMKKK--KNFNSSFGVLNMGSI  141 (471)
Q Consensus        76 v~~~~~~-~~~~~-~----------~~~~~~~~~~~~~~~g~~~faf~~~~~~~~i~~~m~~p--~~~~~~~~v~~~s~~  141 (471)
                      ++++... +.++. +          +.+.+....+.+.++|+++|||.||.+.+++++|||||  +|+.+   ++..++.
T Consensus       223 ivi~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~algi~~faF~~h~~~~~i~~~M~~~t~~~~~~---v~~~s~~  299 (467)
T PTZ00206        223 IVVHSCMNGLPENIKNVSVGKDDNAEIILFNSGNRAIEGLGVFIFAYVFQITAYEVYMDMTNRSVGKFVL---ASTIAMG  299 (467)
T ss_pred             hhhhhhcccCcccccccccCCCCCCceEEecCchHHHhhhhHHHhhhhhhhhhHHHHHhhcccchhHHHH---HHHHHHH
Confidence            6554442 22211 1          11122223457789999999999999999999999986  56777   8999999


Q ss_pred             HHHHHHHHHhhhhhhcccCccccceeeec-CCCCCChHHHHHHHHHHHHHHHhhccccchhHHHHHHHHhhhcCCCChhh
Q psy14360        142 LIIALMLSMGFFGYLKYGENVKGSITLNL-SDRKDDPLALVVVGSIGFGILCTYSLQFYVPVAIIWAELEEKYGPFKHPA  220 (471)
Q Consensus       142 ~~~~~Y~~~g~~gY~~fG~~~~~~il~nl-~~~~~~~~~~v~~~~~~l~l~~s~pl~~~p~~~~~~~~~~~~~~~~~~~~  220 (471)
                      ++.++|..+|++||++||++++++++.|+ |.  +++...++++++.+.++++||++.+|+|+.+++.+..+.+  +.++
T Consensus       300 i~~~lY~~~G~~GYl~fG~~v~~~Illn~~p~--~~~~~~v~~~~~~~~v~~sypL~~~p~r~~i~~~~~~~~~--~~~~  375 (467)
T PTZ00206        300 MCFTMYVLTAFFGYMDFGRNVTGSVLLMYDPV--NEPAIMVGFVGVLVKLFVSYALLGMACRNALYDVIGWDAR--KVAF  375 (467)
T ss_pred             HHHHHHHHHHHhhhhccccccchHHHHhCCCC--CCchhhHHHHHHHHHHHHhhhhhhhhHHHHHHHHhCCCcc--cCch
Confidence            99999999999999999999999999999 55  5778889999999999999999999999999988743322  2233


Q ss_pred             HHHHHHHHHHHHHHHHHHHhhcch----hhhhhhhhhhhHhhhhhHHHHhh
Q psy14360        221 FGETILRVSLVLLTCKLALVVVGS----IGFGILCTYSLQFYVPVAIIWAE  267 (471)
Q Consensus       221 ~~~~~~r~~~~~~~~~iA~~ip~~----slvGs~~~~~l~fi~P~l~~l~~  267 (471)
                      +++...+..+++.+.++|+.+||+    +++||++++.++|++|+++|++.
T Consensus       376 ~~~~~~~~~l~~~~l~iAi~vP~l~~vl~lvGa~~~~~l~fi~P~lf~l~~  426 (467)
T PTZ00206        376 WKHCIAVVTLSVVMLLCGLFIPKINTVLGFAGSISGGLLGFILPALLFMYS  426 (467)
T ss_pred             hhHHHHHHHHHHHHHHHHhccCCHHHhhhhhhHHHHHHHHHHHHHHHHHhc
Confidence            667667777788889999999998    99999999999999999999995

>KOG1303|consensus

Probab=100.00  E-value=5.3e-34  Score=286.57  Aligned_cols=272  Identities=17%  Similarity=0.225  Sum_probs=230.0

Q ss_pred             eeecccchhhHHhhHhhHHHHHHhhcc---CcchHHHHHHHHHHHHHHHhhccccchhhHHHHHHHHHHHHhheeeeeec
Q psy14360          5 ITQLGFCCVYFVFVAQSSHQICLALDI---DYKLHYHMAIMLAPILFTAMIRNLKYIAPISAVANLIMGLGIAAIYYYIL   81 (471)
Q Consensus         5 ~~~~G~~~~y~i~~~~~l~~~~~~~~~---~~~~~~~~~i~~~~~~pl~~~~~l~~l~~~S~~~~~~~~~~~~~v~~~~~   81 (471)
                      +.++|+|++|++..||+++.+.+....   +.+.+.|++++.++.+|++++||++.+++.|..|.+.+.....+..+.+.
T Consensus       129 ~~~fg~~v~y~il~~~~L~~~~~~~~~~~~~l~~~~f~iif~~i~~~~s~lp~~~~l~~~S~~~avmS~~~a~~~~~~g~  208 (437)
T KOG1303|consen  129 LELFGICVVYIILAGDNLKALFPIVSLNDNSLDKQYFIIIFGLIVLPLSQLPNFHSLSYLSLVGAVMSTLYAVILIVLGI  208 (437)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhcCCccccccceehhhhHHHHHHHHHHCCCcchhHHHHHHHHHHHHHHHHHHHHHhh
Confidence            468999999999999999999998762   34568999999999999999999999999999999887765555544444


Q ss_pred             ccCCC---C-CCCCccccccch-hHHHHHHHHhhccceeeecchhhcccccCCCcccchhhhHHHHHHHHHHHHhhhhhh
Q psy14360         82 QDLPP---V-STRNYVGHIQQI-PLFFGTVIFAFEGIALVLPLQREMKKKKNFNSSFGVLNMGSILIIALMLSMGFFGYL  156 (471)
Q Consensus        82 ~~~~~---~-~~~~~~~~~~~~-~~~~g~~~faf~~~~~~~~i~~~m~~p~~~~~~~~v~~~s~~~~~~~Y~~~g~~gY~  156 (471)
                      .++.+   . .+.+.. +..+. +.++|+++|+|.+|..+||||++||+|++|+|   ++..++.+++.+|+.+++.||+
T Consensus       209 ~~g~~~~~~~~~~~~~-~~~~~~f~a~g~iaFaf~gH~v~peIq~tMk~p~~f~~---~~lis~~~~~~~y~~vai~GY~  284 (437)
T KOG1303|consen  209 ADGVGFCAPSGGYLDL-GTIPTVFTALGIIAFAYGGHAVLPEIQHTMKSPPKFKK---ALLISYIIVTFLYFPVAIIGYW  284 (437)
T ss_pred             ccccccCCcccCcccC-CCCcchhhhhhheeeeecCCeeeeehHhhcCCchhhhh---HHHHHHHHHHHHHHHHHHhhhh
Confidence            33311   1 111111 22222 68999999999999999999999999999999   9999999999999999999999


Q ss_pred             cccCccccceeeecCCCCCChHHHHHHHHHHHHHHHhhccccchhHHHHHHHHhhhcCC-CChhhHHHHHHHHHHHHHHH
Q psy14360        157 KYGENVKGSITLNLSDRKDDPLALVVVGSIGFGILCTYSLQFYVPVAIIWAELEEKYGP-FKHPAFGETILRVSLVLLTC  235 (471)
Q Consensus       157 ~fG~~~~~~il~nl~~~~~~~~~~v~~~~~~l~l~~s~pl~~~p~~~~~~~~~~~~~~~-~~~~~~~~~~~r~~~~~~~~  235 (471)
                      +|||+++|+++.|+++  +.++...+++++.+|++.++++...|..+.+|+....+.++ +++..+.|.+.|+.+++.++
T Consensus       285 aFG~~~~~~il~s~~~--p~~~~~~ani~i~~h~i~s~~i~a~pl~~~~E~~~~~~~~~~~~~~~~~R~~~Rt~~v~~~~  362 (437)
T KOG1303|consen  285 AFGDSVPDNILLSLQP--PTWLIALANILIVLHLIGSYQIYAQPLFDVVEKLIGVKHPDFKKRSLVLRLLVRTFFVAVTT  362 (437)
T ss_pred             hhccccchhhhhcccC--chhHHHHHHHHHHHHHhhhhhhhhcchHHHHHHHhccCCccccccccceeeehhhHHHHHHH
Confidence            9999999999999952  36999999999999999999999999999999988754442 22334789999999999999


Q ss_pred             HHHHhhcch----hhhhhhhhhhhHhhhhhHHHHhhh-ccccCccccccccc
Q psy14360        236 KLALVVVGS----IGFGILCTYSLQFYVPVAIIWAEL-EEKYGPFKHPAFVP  282 (471)
Q Consensus       236 ~iA~~ip~~----slvGs~~~~~l~fi~P~l~~l~~~-~~~~g~~~~~~~~~  282 (471)
                      ++|+.+|+|    +++||+...++++++|+++|++.+ +++.++.++..+..
T Consensus       363 ~vA~~~PfFg~l~~lvGa~~~~p~t~ilP~~~yl~~~k~~~~s~~~~~~~~~  414 (437)
T KOG1303|consen  363 FVALSFPFFGDLLSLVGAFLFWPLTFILPCLMYLLIKKPKRFSPKWLLNWVI  414 (437)
T ss_pred             HHHHhccccHhHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHh
Confidence            999999999    999999999999999999999998 66667666666655

>PF01490 Aa_trans: Transmembrane amino acid transporter protein; InterPro: IPR013057 This transmembrane region is found in many amino acid transporters including P34579 from SWISSPROT (UNC-47) and P40501 from SWISSPROT (MTR)

Probab=100.00  E-value=3.2e-35  Score=300.63  Aligned_cols=267  Identities=23%  Similarity=0.331  Sum_probs=224.8

Q ss_pred             EEeeeecccchhhHHhhHhhHHHHHHhhcc--CcchHHHHHHHHHHHHHHHhhccccchhhHHHHHHHHHHHHhheeeee
Q psy14360          2 FVIITQLGFCCVYFVFVAQSSHQICLALDI--DYKLHYHMAIMLAPILFTAMIRNLKYIAPISAVANLIMGLGIAAIYYY   79 (471)
Q Consensus         2 ~i~~~~~G~~~~y~i~~~~~l~~~~~~~~~--~~~~~~~~~i~~~~~~pl~~~~~l~~l~~~S~~~~~~~~~~~~~v~~~   79 (471)
                      .++++++|.|++|+++++|+++++++....  ..++..+.++..++++|++++|+++++++.|.+|.++....+....+.
T Consensus        89 ~~~~~~~g~~v~y~i~~~~~l~~~~~~~~~~~~~~~~~~~~i~~~i~~pls~~~~l~~l~~~s~~~~~~~~~~~~~~~~~  168 (409)
T PF01490_consen   89 CIFIYLFGSCVAYLIIIGDSLSSLIPSFFGDLFISRYVWIIIFALIVLPLSFLKNLKSLRYLSILGLFSIFYFIVIVVIY  168 (409)
T ss_pred             hheeccccccceeEEEeeeeeecccccccccccccccccccccccccccccccchhhHHHHHhhhhhhccceeeeeecce
Confidence            467899999999999999999999987653  356677778888899999999999999999999999887642222222


Q ss_pred             ecccC----CCCCCCC--ccccccchhHHHHHHHHhhccceeeecchhhcccccCCCcccchhhhHHHHHHHHHHHHhhh
Q psy14360         80 ILQDL----PPVSTRN--YVGHIQQIPLFFGTVIFAFEGIALVLPLQREMKKKKNFNSSFGVLNMGSILIIALMLSMGFF  153 (471)
Q Consensus        80 ~~~~~----~~~~~~~--~~~~~~~~~~~~g~~~faf~~~~~~~~i~~~m~~p~~~~~~~~v~~~s~~~~~~~Y~~~g~~  153 (471)
                      ...+.    .+.++.+  ...++.+++.++|+++|||.||.++|++++|||+|+|++|..++...++.++.++|..+|.+
T Consensus       169 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~faf~~~~~~~~i~~~m~~~~~~~~~~~~~~~s~~~~~~~y~~~g~~  248 (409)
T PF01490_consen  169 IISYGPGEPSGVPSPPVWPFISFSGFFSAFGIIIFAFSCHPNLPPIQSEMKDPSKFKKMKKVLSISMIICFIIYLLFGIF  248 (409)
T ss_pred             eeeeecccccccccccccccchhhHHHHhhhhhhhhhhcccccceeeeeccCCccccccceeeeehhhhhhHHhhhhhhc
Confidence            22221    1111111  22345688999999999999999999999999999998843339999999999999999999


Q ss_pred             hhhcccCccccceeeecCCCCCChHHHHHHHHHHHHHHHhhccccchhHHHHHHHHhhh-------cCCCChhhHHHHHH
Q psy14360        154 GYLKYGENVKGSITLNLSDRKDDPLALVVVGSIGFGILCTYSLQFYVPVAIIWAELEEK-------YGPFKHPAFGETIL  226 (471)
Q Consensus       154 gY~~fG~~~~~~il~nl~~~~~~~~~~v~~~~~~l~l~~s~pl~~~p~~~~~~~~~~~~-------~~~~~~~~~~~~~~  226 (471)
                      ||++||+++++|+++|+|+  +++...++++++.++++++||++.+|.++.+++.+.++       ..+++.++++|...
T Consensus       249 gy~~fg~~~~~~il~n~~~--~~~~~~i~~~~~~i~~~~s~pl~~~p~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~  326 (409)
T PF01490_consen  249 GYLAFGDSVQGNILLNLPN--DDVLIIIARILLVISLLLSYPLQLFPARNSLENLLFKRAASSRDSPKNTPSSRWLRYLI  326 (409)
T ss_pred             ccceeeeeecchhhhcCCC--cccccccccccchhhhhhccccccchhHhhhhhheeccccccccccccccccceeeeee
Confidence            9999999999999999998  56799999999999999999999999999999998753       12223334788999


Q ss_pred             HHHHHHHHHHHHHhhcch----hhhhhhhhhhhHhhhhhHHHHhhhcc
Q psy14360        227 RVSLVLLTCKLALVVVGS----IGFGILCTYSLQFYVPVAIIWAELEE  270 (471)
Q Consensus       227 r~~~~~~~~~iA~~ip~~----slvGs~~~~~l~fi~P~l~~l~~~~~  270 (471)
                      |+.+++.+.++|..+||+    +++||++++.++|++|+++|+|.+++
T Consensus       327 ~~~~~~~~~~iA~~vp~~~~i~~l~Ga~~~~~i~fi~P~l~~~~~~~~  374 (409)
T PF01490_consen  327 RIILVLLSFLIAIFVPNFGDIISLVGALFGSFISFILPALLYLKLFKR  374 (409)
T ss_pred             ecchhhhhhhhhhhccchhhhhcccchHHHHhHHHHHHHHHHHHhhcc
Confidence            999999999999999998    99999999999999999999999943

UNC-47 encodes a vesicular amino butyric acid (GABA) transporter, (VGAT) and is is predicted to have 10 transmembrane domains UNC47_CAEEL []. MTR is an N system amino acid transporter system protein involved in methyltryptophan resistance MTR_NEUCR. Other members of this family include proline transporters and amino acid transporters whose specificity has not yet been identified.

>PLN03074 auxin influx permease; Provisional

Probab=100.00  E-value=1.1e-33  Score=290.54  Aligned_cols=286  Identities=12%  Similarity=0.019  Sum_probs=223.5

Q ss_pred             EeeeecccchhhHHhhHhhHHHHHHhhccCcchHHHHHHHHHHHHHHHhhccccchhhHHHHHHHHHHHHhheeeeeecc
Q psy14360          3 VIITQLGFCCVYFVFVAQSSHQICLALDIDYKLHYHMAIMLAPILFTAMIRNLKYIAPISAVANLIMGLGIAAIYYYILQ   82 (471)
Q Consensus         3 i~~~~~G~~~~y~i~~~~~l~~~~~~~~~~~~~~~~~~i~~~~~~pl~~~~~l~~l~~~S~~~~~~~~~~~~~v~~~~~~   82 (471)
                      .+++++|.|+.|++..++++.++.    +.++.|.|+.++..+..|++++|++|+++++|.+|+.+++.....++.....
T Consensus       142 ~~v~l~~~~v~~li~~~~~~~~l~----~~~~~~~~~~i~~~v~~~~~~i~sl~~l~~~S~ig~~~tl~~av~i~i~~i~  217 (473)
T PLN03074        142 NCTFLLFGSVIQLIACASNIYYIN----DNLDKRTWTYIFGACCATTVFIPSFHNYRIWSFLGLLMTTYTAWYMTIAALS  217 (473)
T ss_pred             HhhhhHHHHHHHHHHHhhhhhhhC----CCcCCCeEEeehHHHHHHHHHccCHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            456888999999999998887662    3578899998888899999999999999999999988766543333333332


Q ss_pred             cC--CCCCCCCccccccchhHHHHHHHHhhccceeeecchhhcccccCCCcccchhhhHHHHHHHHHHHHhhhhhhcccC
Q psy14360         83 DL--PPVSTRNYVGHIQQIPLFFGTVIFAFEGIALVLPLQREMKKKKNFNSSFGVLNMGSILIIALMLSMGFFGYLKYGE  160 (471)
Q Consensus        83 ~~--~~~~~~~~~~~~~~~~~~~g~~~faf~~~~~~~~i~~~m~~p~~~~~~~~v~~~s~~~~~~~Y~~~g~~gY~~fG~  160 (471)
                      +.  ++.++ +...+...++.+.++++|+|+||..+|++++|||||+||++   +...++..+...|..+|+.||++|||
T Consensus       218 ~~~~~~~~~-~~~~~~~~~f~~~~~i~faf~g~~v~~~I~~~M~~P~~F~~---~~~l~~~~v~~~y~~~~~~gY~~fG~  293 (473)
T PLN03074        218 HGQVEGVKH-SGPTKLVLYFTGATNILYTFGGHAVTVEIMHAMWKPQKFKY---IYLAATLYVLTLTLPSAAAVYWAFGD  293 (473)
T ss_pred             hcCCCCCCC-CCchhHHHHHHHHHHHHHHhcccccHHHHHHhccChhcccc---hHHHHHHHHHHHHHHHHHeeeeeech
Confidence            21  11111 11112334455566799999999999999999999999999   88899999999999999999999999


Q ss_pred             ccc--cceeeecCCCCCChHHHHHHHHHHHHHHHhhccccchhHHHHHHHHhhhcCCCChhhHHHHHHHHHHHHHHHHHH
Q psy14360        161 NVK--GSITLNLSDRKDDPLALVVVGSIGFGILCTYSLQFYVPVAIIWAELEEKYGPFKHPAFGETILRVSLVLLTCKLA  238 (471)
Q Consensus       161 ~~~--~~il~nl~~~~~~~~~~v~~~~~~l~l~~s~pl~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~iA  238 (471)
                      +++  ++.+.|+|+   +.+.++++++++++++.+||++++|..+..|+.+..+ +  .++.+.|.++|+.+++.++++|
T Consensus       294 ~~~~~s~~l~~lp~---~~~~~~~~~~~~i~~~~sy~l~~~p~~~~~e~~~~~~-~--~k~~~~r~~~R~~lv~~~~~iA  367 (473)
T PLN03074        294 ELLTHSNAFSLLPR---SGWRDAAVILMLIHQFITFGFACTPLYFVWEKAIGVH-D--TKSICLRALARLPVVVPIWFLA  367 (473)
T ss_pred             hhhhchhHHhcCCC---chHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHhccc-c--cccHHHHHHHHHHHHHHHHHHH
Confidence            876  456777987   4567899999999999999999999988887765432 2  2234788999999999999999


Q ss_pred             Hhhcch----hhhhhhhhhhhHhhhhhHHHHhhh-cc------------ccCccccccccccccc-------cccCcccc
Q psy14360        239 LVVVGS----IGFGILCTYSLQFYVPVAIIWAEL-EE------------KYGPFKHPAFVPASSP-------SLSGTGKN  294 (471)
Q Consensus       239 ~~ip~~----slvGs~~~~~l~fi~P~l~~l~~~-~~------------~~g~~~~~~~~~~~~~-------~v~~~~~~  294 (471)
                      +.+|+|    ||+||++++.++|++|+++|++++ ++            ..++++|+.+.+....       .+.+++++
T Consensus       368 ~~IP~fg~llsLvGs~~~s~l~~i~P~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~iiv~~~~~g~~~G~~as  447 (473)
T PLN03074        368 IIFPFFGPINSAVGALLVSFTVYIIPSLAHMLTYRSASARQNAAEKPPFFLPSWTGMYVVNAFVVVWVLVVGFGFGGWAS  447 (473)
T ss_pred             HHccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchhhhhhcccCCcccCCccceehhhhhHHHHhhhhHhhccchHHH
Confidence            999998    999999999999999999999977 32            1333444445543311       24567888


Q ss_pred             cccccccc
Q psy14360        295 QQTIPDEI  302 (471)
Q Consensus       295 ~~~i~~~~  302 (471)
                      +.++.+.+
T Consensus       448 i~~ii~~~  455 (473)
T PLN03074        448 MTNFVRQI  455 (473)
T ss_pred             HHHHHHhh
Confidence            88887765

>KOG4303|consensus

Probab=99.97  E-value=2e-32  Score=255.08  Aligned_cols=256  Identities=22%  Similarity=0.282  Sum_probs=227.9

Q ss_pred             eeecccchhhHHhhHhhHHHHHHhhccCcchHHHHHHHHHHHHHHHhhccccchhhHHHHHHHHHHHHhheeeeeecccC
Q psy14360          5 ITQLGFCCVYFVFVAQSSHQICLALDIDYKLHYHMAIMLAPILFTAMIRNLKYIAPISAVANLIMGLGIAAIYYYILQDL   84 (471)
Q Consensus         5 ~~~~G~~~~y~i~~~~~l~~~~~~~~~~~~~~~~~~i~~~~~~pl~~~~~l~~l~~~S~~~~~~~~~~~~~v~~~~~~~~   84 (471)
                      +.++.+|+.|++..||.++.-++..  +.+++-|+.+....++|.+++|++|..+.+|.++..+-+..-++++.|+....
T Consensus       210 iELlmTCIlYvVv~gdLl~~~fP~~--svd~~sWm~i~~a~LLpc~FLk~Lk~VS~lSf~ct~sH~viN~i~v~YCLs~~  287 (524)
T KOG4303|consen  210 IELLMTCILYVVVAGDLLQSCFPGL--SVDKASWMMITSASLLPCSFLKDLKIVSRLSFFCTISHLVINLIMVLYCLSFV  287 (524)
T ss_pred             HHHHHHHHhhhheechhhhccCCCC--CccccchhhhhhHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            3467799999999999999988754  47889999999999999999999999999999999999888888888888766


Q ss_pred             CCCC--CCCccccccchhHHHHHHHHhhccceeeecchhhcccccCCCcccchhhhHHHHHHHHHHHHhhhhhhcccCcc
Q psy14360         85 PPVS--TRNYVGHIQQIPLFFGTVIFAFEGIALVLPLQREMKKKKNFNSSFGVLNMGSILIIALMLSMGFFGYLKYGENV  162 (471)
Q Consensus        85 ~~~~--~~~~~~~~~~~~~~~g~~~faf~~~~~~~~i~~~m~~p~~~~~~~~v~~~s~~~~~~~Y~~~g~~gY~~fG~~~  162 (471)
                      .+|+  .+....+..++|...|+++|+|..|.-+|+++..|+||++|..   .+.|+-+...++-..+|..||++||+.+
T Consensus       288 ~dW~wskv~Fsidi~~fPisvG~iVFsYTSqIFLP~LEGNM~~ps~Fn~---Ml~WsHIAAaVfK~~Fg~~~fLTf~~~T  364 (524)
T KOG4303|consen  288 SDWSWSKVTFSIDINTFPISVGMIVFSYTSQIFLPNLEGNMKNPSQFNV---MLKWSHIAAAVFKVVFGMLGFLTFGELT  364 (524)
T ss_pred             hhccceeEEEEEEcccCceEEEEEEEeeeceeeccccccccCChhHhee---eeehHHHHHHHHHHHHHHheeeeechhh
Confidence            5553  4444557788999999999999999999999999999999999   8999999999999999999999999999


Q ss_pred             ccceeeecCCCCCChHHHHHHHHHHHHHHHhhccccchhHHHHHHHHhhhcCCCC---------hhhHHHHHHHHHHHHH
Q psy14360        163 KGSITLNLSDRKDDPLALVVVGSIGFGILCTYSLQFYVPVAIIWAELEEKYGPFK---------HPAFGETILRVSLVLL  233 (471)
Q Consensus       163 ~~~il~nl~~~~~~~~~~v~~~~~~l~l~~s~pl~~~p~~~~~~~~~~~~~~~~~---------~~~~~~~~~r~~~~~~  233 (471)
                      |..|++|+|+   .-+..++++++++..+.||||-++.+.|.+|+-+++..++..         .-+-+...+|..+++.
T Consensus       365 qevItnnLp~---qsfk~~VN~fLV~KALLSYPLPfyAAvelLe~nlF~g~p~t~Fpscys~Dg~Lk~WgltlR~~lvvf  441 (524)
T KOG4303|consen  365 QEVITNNLPN---QSFKILVNLFLVVKALLSYPLPFYAAVELLENNLFLGYPQTPFPSCYSPDGSLKEWGLTLRIILVVF  441 (524)
T ss_pred             HHHHhcCCCc---cchhhhhhHHHHHHHHHcCCchHHHHHHHHHHhhhcCCCCCCCceeeCCCcchhhheeeeeeHHHHH
Confidence            9999999997   677889999999999999999999999999998886543321         1123456789999999


Q ss_pred             HHHHHHhhcch----hhhhhhhhhhhHhhhhhHHHHhhh
Q psy14360        234 TCKLALVVVGS----IGFGILCTYSLQFYVPVAIIWAEL  268 (471)
Q Consensus       234 ~~~iA~~ip~~----slvGs~~~~~l~fi~P~l~~l~~~  268 (471)
                      +.+.|+.+|+|    +++|++.++.++|+.|++||+++.
T Consensus       442 TllmAi~vPhf~~LMGl~Gs~TGtmLsFiwP~lFHl~ik  480 (524)
T KOG4303|consen  442 TLLMAISVPHFVELMGLVGSITGTMLSFIWPALFHLYIK  480 (524)
T ss_pred             HHHHHHHhHHHHHHHHhhcccccccHHHHHHHHHHHHHH
Confidence            99999999998    999999999999999999999998

>KOG1304|consensus

Probab=99.96  E-value=5.3e-30  Score=253.44  Aligned_cols=175  Identities=44%  Similarity=0.720  Sum_probs=159.8

Q ss_pred             CccccccccccccccccCc----------------ccccccccccccceeEEEEEEeeecccccchHHHHHHHHHHHHHH
Q psy14360        273 GPFKHPAFVPASSPSLSGT----------------GKNQQTIPDEIWSVVTITAVQICLALDIDYKLHYHMAIMLAPILF  336 (471)
Q Consensus       273 g~~~~~~~~~~~~~~v~~~----------------~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~p  336 (471)
                      |+.+.|.++.+++..++..                ++|++++.|....              .+++.+.|+++..+++++
T Consensus       127 ~~~~~r~~g~~~r~~V~~~L~i~QlGfc~vY~VFva~nl~~i~~~~~~--------------~~~s~~~~i~~~~~~~ll  192 (449)
T KOG1304|consen  127 GPGWLRKYGPAARFVVNFFLVITQLGFCCVYLVFVATNLKQIVDEHSP--------------GVLSVRLYILIQLPPLLL  192 (449)
T ss_pred             CcHHHHhhcHHHHHHHHHHHHHHHhchhhEEeeeHHhhHHHHHhccCC--------------CCccHHHHHHHHHHHHHH
Confidence            4445777777777766533                8899999885444              688999999999999999


Q ss_pred             hhcccCCcchhHHHHHHHHHHHHhhheEEEEeccCCCCCccCcccccccchhhhhhhHhhhccccccchhhHHhhhcCCC
Q psy14360        337 TAMIRNLKYIAPISAVANLIMGLGIAAIYYYILQDLPPVSTRNYVGHIQQIPLFFGTVIFAFEGIALVLPLQREMKKKKN  416 (471)
Q Consensus       337 l~~~~~l~~ls~~S~~~~~~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~faf~~~~~~~~i~~~M~~p~~  416 (471)
                      ++++||+|+|+++|++|++.+++++.++++|..++.++.++.+...++++++.++|+.+|||||++++.|+||+||||++
T Consensus       193 l~~Ir~Lk~Lsp~Sl~Anv~~~~g~~ii~~y~~~~~~~~~~~~~~~~~~~~~lf~GtaifafEGig~VLPlEn~Mk~P~~  272 (449)
T KOG1304|consen  193 LNLIRNLKILSPFSLFANVFILVGLAIIMYYLVQDLPPTSDLPAVTGWSGLPLFFGTAIFAFEGIGMVLPLENSMKKPQK  272 (449)
T ss_pred             HHHHHhhHHhhHHHHHHHHHHHHHHHHHHHHHHhccCCccccccccchhhhHHHHHHHHHHhccceEEEehhhcccChhh
Confidence            99999999999999999999999999999999999998888888888999999999999999999999999999999999


Q ss_pred             CCcccchhhhHHHHHHHHHHHHHhhhhhhccCccccceeeccCCC
Q psy14360        417 FNSSFGVLNMGSILIIALMLSMGFFGYLKYGENVKGSITLNLSDR  461 (471)
Q Consensus       417 f~~~~~vl~~~~~~~~~~y~~~g~~gY~~fG~~~~~~i~~~~p~~  461 (471)
                      |+.+.|+++.++.+++++|..+|.+||++||||++++||.|+|++
T Consensus       273 F~g~~gVLn~~M~~V~~ly~~~Gf~GYl~fG~~v~~sITLNLP~~  317 (449)
T KOG1304|consen  273 FPGPFGVLNLGMGIVTLLYIFLGFFGYLAFGDDVKGSITLNLPQE  317 (449)
T ss_pred             cCCccchHHHHHHHHHHHHHHHHHHHHhhccccccceEEecCCcc
Confidence            997777999999999999999999999999999999999999973

>KOG1305|consensus

Probab=99.95  E-value=2.1e-28  Score=244.96  Aligned_cols=260  Identities=19%  Similarity=0.229  Sum_probs=213.5

Q ss_pred             ecccchhhHHhhHhhHHHHHHhhc-cCc-----chH-H-HHHHHHHHHHHHHhhccccchhhHHHHHHHHHHHHhheeee
Q psy14360          7 QLGFCCVYFVFVAQSSHQICLALD-IDY-----KLH-Y-HMAIMLAPILFTAMIRNLKYIAPISAVANLIMGLGIAAIYY   78 (471)
Q Consensus         7 ~~G~~~~y~i~~~~~l~~~~~~~~-~~~-----~~~-~-~~~i~~~~~~pl~~~~~l~~l~~~S~~~~~~~~~~~~~v~~   78 (471)
                      ..| |++|++++||.++....... .++     .+| . |++....++.|+++.|++++|++.|.++.++....+..+.+
T Consensus        93 ~~g-~i~yliiigd~~p~~~~~~~~~~~~~~~~~~~~~~ill~~~~~i~pLsl~k~l~~Lk~tS~~s~~~~~~fv~~vv~  171 (411)
T KOG1305|consen   93 GVG-MVSYLIIIGDLLPGFIRSLFLDEEGGSHYLDRNFLILLVLLFIILPLSLLKNLDSLKYTSALSLASVVYFVVLVVY  171 (411)
T ss_pred             hcc-ceEEEEEEccccchhhhhcccccccccccccceeEeehHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHH
Confidence            344 69999999999997766543 222     222 2 46778889999999999999999999999999988887777


Q ss_pred             eecccCC---CC-CCCCccccccchhHHHHHHHHhhccceeeecchhhcccccC--CCcccchhhhHHHHHHHHHHHHhh
Q psy14360         79 YILQDLP---PV-STRNYVGHIQQIPLFFGTVIFAFEGIALVLPLQREMKKKKN--FNSSFGVLNMGSILIIALMLSMGF  152 (471)
Q Consensus        79 ~~~~~~~---~~-~~~~~~~~~~~~~~~~g~~~faf~~~~~~~~i~~~m~~p~~--~~~~~~v~~~s~~~~~~~Y~~~g~  152 (471)
                      +.+....   +. .+.+....++++...+++++|+|.||.+..++++|||||++  +++   +...+...+..+|..+|.
T Consensus       172 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pi~~faf~Ch~n~~~i~~El~~~s~~~i~~---v~~~~~~~~~~iy~~~g~  248 (411)
T KOG1305|consen  172 KYFQGPCALGRLSYLVPNLSSFSSLFYALPIFVFAFTCHSNVFPIYNELKDRSVKKIQR---VSNIAIILATLIYLLTGL  248 (411)
T ss_pred             HHHhcccccCCcccccCCcchhhhhhhhhhhhheeeeccccceeeeeeeeCchHHHHHH---HHHHHHHHHHHHHHHHHH
Confidence            7666432   11 11222222257888999999999999999999999999964  666   899999999999999999


Q ss_pred             hhhhcccCccccceeeecCCCCCC----hHHHHHHHHHHHHHHHhhccccchhHHHHHHHHhhhcCC-CChhhHHHHHHH
Q psy14360        153 FGYLKYGENVKGSITLNLSDRKDD----PLALVVVGSIGFGILCTYSLQFYVPVAIIWAELEEKYGP-FKHPAFGETILR  227 (471)
Q Consensus       153 ~gY~~fG~~~~~~il~nl~~~~~~----~~~~v~~~~~~l~l~~s~pl~~~p~~~~~~~~~~~~~~~-~~~~~~~~~~~r  227 (471)
                      +||+.|||++++|++.++|++.+.    .....++..+.++.+.++|++.+|.|..+++.+.++.++ ++....++.+++
T Consensus       249 ~GYL~Fg~~v~~n~l~~~~~~~~~~l~~~~~~~vr~~~~~~~~l~~pi~~fPlr~~l~~~~~~~~~~~~~~s~~r~~~it  328 (411)
T KOG1305|consen  249 FGYLTFGDLVKGNLLHNYDSILNNLLRSFPLLCVRLRIAVAVLLTFPIVLFPLRMNLDELLFPYQPGLTSFSGKRHFVIT  328 (411)
T ss_pred             hhhheecccchHHHHhcCCcccchhHhhhhHHHHHHHHHHHHHHHHHHHhchHHHHHHHHhcccCCCCCCccceehhHHH
Confidence            999999999999999999883211    235799999999999999999999999998888765443 233336678999


Q ss_pred             HHHHHHHHHHHHhhcch----hhhhhhhhhhhHhhhhhHHHHhhhcc
Q psy14360        228 VSLVLLTCKLALVVVGS----IGFGILCTYSLQFYVPVAIIWAELEE  270 (471)
Q Consensus       228 ~~~~~~~~~iA~~ip~~----slvGs~~~~~l~fi~P~l~~l~~~~~  270 (471)
                      ..++..+.+.|+.+|++    +++||++++.++|++|+++|++..++
T Consensus       329 l~ll~~~~l~ai~~p~i~~i~~~vGAT~~~~i~FI~P~~~yl~~~~~  375 (411)
T KOG1305|consen  329 LLLLIFTFLLAIFVPSIGTIFGFVGATSSTSISFILPALYYLKASKK  375 (411)
T ss_pred             HHHHHHHHHHHHHhccHHHHHHHhhhhhhhhhHHHHHHHhhheeecc
Confidence            99999999999999998    99999999999999999999998854

>KOG1303|consensus

Probab=99.79  E-value=3.4e-20  Score=186.92  Aligned_cols=162  Identities=21%  Similarity=0.283  Sum_probs=124.9

Q ss_pred             ccccccccccccceeEEEEEEeeecccc-cchHHHHHHHHHHHHHHhhcccCCcchhHHHHHHHHHHHHhhheEEEEecc
Q psy14360        292 GKNQQTIPDEIWSVVTITAVQICLALDI-DYKLHYHMAIMLAPILFTAMIRNLKYIAPISAVANLIMGLGIAAIYYYILQ  370 (471)
Q Consensus       292 ~~~~~~i~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~i~~~~~~pl~~~~~l~~ls~~S~~~~~~~~~~~~ii~~~~~~  370 (471)
                      ++|++.+.+.++..             . .++.+.|+.++.++.+|++++||++.+++.|..|++..+....+..+.+..
T Consensus       143 ~~~L~~~~~~~~~~-------------~~~l~~~~f~iif~~i~~~~s~lp~~~~l~~~S~~~avmS~~~a~~~~~~g~~  209 (437)
T KOG1303|consen  143 GDNLKALFPIVSLN-------------DNSLDKQYFIIIFGLIVLPLSQLPNFHSLSYLSLVGAVMSTLYAVILIVLGIA  209 (437)
T ss_pred             HHHHHHHHHhcCCc-------------cccccceehhhhHHHHHHHHHHCCCcchhHHHHHHHHHHHHHHHHHHHHHhhc
Confidence            66666666665551             1 455778999999999999999999999999999999776444343333332


Q ss_pred             CC-CCCcc-Cc--ccccccchhhhhhhHhhhccccccchhhHHhhhcCCCCCcccchhhhHHHHHHHHHHHHHhhhhhhc
Q psy14360        371 DL-PPVST-RN--YVGHIQQIPLFFGTVIFAFEGIALVLPLQREMKKKKNFNSSFGVLNMGSILIIALMLSMGFFGYLKY  446 (471)
Q Consensus       371 ~~-~~~~~-~~--~~~~~~~~~~~~g~~~faf~~~~~~~~i~~~M~~p~~f~~~~~vl~~~~~~~~~~y~~~g~~gY~~f  446 (471)
                      ++ ..... ++  ...+....++++|++.|+|+||+++||||++||+|++|+|   ++..++.+++.+|+.+++.||++|
T Consensus       210 ~g~~~~~~~~~~~~~~~~~~~f~a~g~iaFaf~gH~v~peIq~tMk~p~~f~~---~~lis~~~~~~~y~~vai~GY~aF  286 (437)
T KOG1303|consen  210 DGVGFCAPSGGYLDLGTIPTVFTALGIIAFAYGGHAVLPEIQHTMKSPPKFKK---ALLISYIIVTFLYFPVAIIGYWAF  286 (437)
T ss_pred             cccccCCcccCcccCCCCcchhhhhhheeeeecCCeeeeehHhhcCCchhhhh---HHHHHHHHHHHHHHHHHHhhhhhh
Confidence            22 21111 11  1112222279999999999999999999999999999999   888999999999999999999999


Q ss_pred             cCccccceeeccCCCCCCccccCCC
Q psy14360        447 GENVKGSITLNLSDRKDDPLGYLDN  471 (471)
Q Consensus       447 G~~~~~~i~~~~p~~~~~~~~~~~n  471 (471)
                      ||+++++++.|++  .++|+...+|
T Consensus       287 G~~~~~~il~s~~--~p~~~~~~an  309 (437)
T KOG1303|consen  287 GDSVPDNILLSLQ--PPTWLIALAN  309 (437)
T ss_pred             ccccchhhhhccc--CchhHHHHHH
Confidence            9999999999996  5566665554

>PTZ00206 amino acid transporter; Provisional

Probab=99.68  E-value=1.5e-17  Score=171.94  Aligned_cols=134  Identities=19%  Similarity=0.242  Sum_probs=104.0

Q ss_pred             HHHHHHHHHHHhhcccCCcchhHHHHHHHHHHHHhhheEEEEec-cCCCCC-cc-------C---cccccccchhhhhhh
Q psy14360        326 HMAIMLAPILFTAMIRNLKYIAPISAVANLIMGLGIAAIYYYIL-QDLPPV-ST-------R---NYVGHIQQIPLFFGT  393 (471)
Q Consensus       326 ~~~i~~~~~~pl~~~~~l~~ls~~S~~~~~~~~~~~~ii~~~~~-~~~~~~-~~-------~---~~~~~~~~~~~~~g~  393 (471)
                      +..+++++++|++++|++++++++|.+|+++++...++++++.. ++.++. ++       .   .......+.+.++|+
T Consensus       185 ~~~i~~~i~lPLs~~r~i~~L~~~S~i~~~~i~~~vi~ivi~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~algi  264 (467)
T PTZ00206        185 TSLMWLCFMLPLVIPRHIDSLRYVSTIAVSFMVYLVIVIVVHSCMNGLPENIKNVSVGKDDNAEIILFNSGNRAIEGLGV  264 (467)
T ss_pred             eeehhhhHhhhcccccchHHHHHHHHHHHHHHHHHHhhhhhhhhcccCcccccccccCCCCCCceEEecCchHHHhhhhH
Confidence            34445667899999999999999999999987765555544333 333221 00       0   011122457889999


Q ss_pred             HhhhccccccchhhHHhhhcCC--CCCcccchhhhHHHHHHHHHHHHHhhhhhhccCccccceeecc-CCCC
Q psy14360        394 VIFAFEGIALVLPLQREMKKKK--NFNSSFGVLNMGSILIIALMLSMGFFGYLKYGENVKGSITLNL-SDRK  462 (471)
Q Consensus       394 ~~faf~~~~~~~~i~~~M~~p~--~f~~~~~vl~~~~~~~~~~y~~~g~~gY~~fG~~~~~~i~~~~-p~~~  462 (471)
                      ++|||+||.+.||+++|||||+  |+.+   ++..++.+++.+|..+|++||++||++++++|+.|+ |.++
T Consensus       265 ~~faF~~h~~~~~i~~~M~~~t~~~~~~---v~~~s~~i~~~lY~~~G~~GYl~fG~~v~~~Illn~~p~~~  333 (467)
T PTZ00206        265 FIFAYVFQITAYEVYMDMTNRSVGKFVL---ASTIAMGMCFTMYVLTAFFGYMDFGRNVTGSVLLMYDPVNE  333 (467)
T ss_pred             HHhhhhhhhhhHHHHHhhcccchhHHHH---HHHHHHHHHHHHHHHHHHhhhhccccccchHHHHhCCCCCC
Confidence            9999999999999999999854  5655   888999999999999999999999999999999999 4443

>PF01490 Aa_trans: Transmembrane amino acid transporter protein; InterPro: IPR013057 This transmembrane region is found in many amino acid transporters including P34579 from SWISSPROT (UNC-47) and P40501 from SWISSPROT (MTR)

Probab=99.67  E-value=9.1e-17  Score=164.34  Aligned_cols=143  Identities=27%  Similarity=0.393  Sum_probs=115.9

Q ss_pred             cchHHHHHHHHHHHHHHhhcccCCcchhHHHHHHHHHHHHhhheEEEEecc----CCCCCccCc--ccccccchhhhhhh
Q psy14360        320 DYKLHYHMAIMLAPILFTAMIRNLKYIAPISAVANLIMGLGIAAIYYYILQ----DLPPVSTRN--YVGHIQQIPLFFGT  393 (471)
Q Consensus       320 ~~~~~~~~~i~~~~~~pl~~~~~l~~ls~~S~~~~~~~~~~~~ii~~~~~~----~~~~~~~~~--~~~~~~~~~~~~g~  393 (471)
                      ..++..|..+..++++|++++|+++.++++|.+|+.++.....+.......    +..+.+..+  ...++.+++.++|+
T Consensus       121 ~~~~~~~~~i~~~i~~pls~~~~l~~l~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i  200 (409)
T PF01490_consen  121 FISRYVWIIIFALIVLPLSFLKNLKSLRYLSILGLFSIFYFIVIVVIYIISYGPGEPSGVPSPPVWPFISFSGFFSAFGI  200 (409)
T ss_pred             cccccccccccccccccccccchhhHHHHHhhhhhhccceeeeeecceeeeeecccccccccccccccchhhHHHHhhhh
Confidence            356667888888889999999999999999999999988642222222221    111111111  23456789999999


Q ss_pred             HhhhccccccchhhHHhhhcCCCCCcccchhhhHHHHHHHHHHHHHhhhhhhccCccccceeeccCCCC
Q psy14360        394 VIFAFEGIALVLPLQREMKKKKNFNSSFGVLNMGSILIIALMLSMGFFGYLKYGENVKGSITLNLSDRK  462 (471)
Q Consensus       394 ~~faf~~~~~~~~i~~~M~~p~~f~~~~~vl~~~~~~~~~~y~~~g~~gY~~fG~~~~~~i~~~~p~~~  462 (471)
                      ++|||.||.++||+++|||+|++++|..++...++.+++.+|..+|..||++||++++++++.|+|+++
T Consensus       201 ~~faf~~~~~~~~i~~~m~~~~~~~~~~~~~~~s~~~~~~~y~~~g~~gy~~fg~~~~~~il~n~~~~~  269 (409)
T PF01490_consen  201 IIFAFSCHPNLPPIQSEMKDPSKFKKMKKVLSISMIICFIIYLLFGIFGYLAFGDSVQGNILLNLPNDD  269 (409)
T ss_pred             hhhhhhcccccceeeeeccCCccccccceeeeehhhhhhHHhhhhhhcccceeeeeecchhhhcCCCcc
Confidence            999999999999999999999998854448999999999999999999999999999999999999866

UNC-47 encodes a vesicular amino butyric acid (GABA) transporter, (VGAT) and is is predicted to have 10 transmembrane domains UNC47_CAEEL []. MTR is an N system amino acid transporter system protein involved in methyltryptophan resistance MTR_NEUCR. Other members of this family include proline transporters and amino acid transporters whose specificity has not yet been identified.

>PLN03074 auxin influx permease; Provisional

Probab=99.66  E-value=2e-17  Score=170.50  Aligned_cols=140  Identities=14%  Similarity=0.081  Sum_probs=106.8

Q ss_pred             ccchHHHHHHHHHHHHHHhhcccCCcchhHHHHHHHHHHHHhhheEEEEec-cCCCCCccCcccccccchhhhhhhHhhh
Q psy14360        319 IDYKLHYHMAIMLAPILFTAMIRNLKYIAPISAVANLIMGLGIAAIYYYIL-QDLPPVSTRNYVGHIQQIPLFFGTVIFA  397 (471)
Q Consensus       319 ~~~~~~~~~~i~~~~~~pl~~~~~l~~ls~~S~~~~~~~~~~~~ii~~~~~-~~~~~~~~~~~~~~~~~~~~~~g~~~fa  397 (471)
                      .++|++.|+.++.++..|++++|++|+++++|.+|..+++...+.+..... .+.++..+++.+.+...++.+.++++|+
T Consensus       166 ~~~~~~~~~~i~~~v~~~~~~i~sl~~l~~~S~ig~~~tl~~av~i~i~~i~~~~~~~~~~~~~~~~~~~f~~~~~i~fa  245 (473)
T PLN03074        166 DNLDKRTWTYIFGACCATTVFIPSFHNYRIWSFLGLLMTTYTAWYMTIAALSHGQVEGVKHSGPTKLVLYFTGATNILYT  245 (473)
T ss_pred             CCcCCCeEEeehHHHHHHHHHccCHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCCchhHHHHHHHHHHHHHH
Confidence            466788899999999999999999999999999998875543222222221 1111111121223344556677789999


Q ss_pred             ccccccchhhHHhhhcCCCCCcccchhhhHHHHHHHHHHHHHhhhhhhccCcccc-c-eeeccCCC
Q psy14360        398 FEGIALVLPLQREMKKKKNFNSSFGVLNMGSILIIALMLSMGFFGYLKYGENVKG-S-ITLNLSDR  461 (471)
Q Consensus       398 f~~~~~~~~i~~~M~~p~~f~~~~~vl~~~~~~~~~~y~~~g~~gY~~fG~~~~~-~-i~~~~p~~  461 (471)
                      |+||+++||||+|||||+||++   ++..++..++..|+.+|+.||++|||++++ + .+.|+|++
T Consensus       246 f~g~~v~~~I~~~M~~P~~F~~---~~~l~~~~v~~~y~~~~~~gY~~fG~~~~~~s~~l~~lp~~  308 (473)
T PLN03074        246 FGGHAVTVEIMHAMWKPQKFKY---IYLAATLYVLTLTLPSAAAVYWAFGDELLTHSNAFSLLPRS  308 (473)
T ss_pred             hcccccHHHHHHhccChhcccc---hHHHHHHHHHHHHHHHHHeeeeeechhhhhchhHHhcCCCc
Confidence            9999999999999999999998   778899999999999999999999999875 3 45568854

>KOG4303|consensus

Probab=99.66  E-value=3.3e-18  Score=160.42  Aligned_cols=145  Identities=21%  Similarity=0.328  Sum_probs=131.8

Q ss_pred             cchHHHHHHHHHHHHHHhhcccCCcchhHHHHHHHHHHHHhhheEEEEeccCCCCC--ccCcccccccchhhhhhhHhhh
Q psy14360        320 DYKLHYHMAIMLAPILFTAMIRNLKYIAPISAVANLIMGLGIAAIYYYILQDLPPV--STRNYVGHIQQIPLFFGTVIFA  397 (471)
Q Consensus       320 ~~~~~~~~~i~~~~~~pl~~~~~l~~ls~~S~~~~~~~~~~~~ii~~~~~~~~~~~--~~~~~~~~~~~~~~~~g~~~fa  397 (471)
                      ++|++-|+++.....+|++|+||+|..|.+|..+.++-++.-++++.|+.....++  +......+..++|..+|+++|+
T Consensus       235 svd~~sWm~i~~a~LLpc~FLk~Lk~VS~lSf~ct~sH~viN~i~v~YCLs~~~dW~wskv~Fsidi~~fPisvG~iVFs  314 (524)
T KOG4303|consen  235 SVDKASWMMITSASLLPCSFLKDLKIVSRLSFFCTISHLVINLIMVLYCLSFVSDWSWSKVTFSIDINTFPISVGMIVFS  314 (524)
T ss_pred             CccccchhhhhhHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccceeEEEEEEcccCceEEEEEEEe
Confidence            67899999999999999999999999999999999999988888888887665543  3344556788999999999999


Q ss_pred             ccccccchhhHHhhhcCCCCCcccchhhhHHHHHHHHHHHHHhhhhhhccCccccceeeccCCCCCCccc
Q psy14360        398 FEGIALVLPLQREMKKKKNFNSSFGVLNMGSILIIALMLSMGFFGYLKYGENVKGSITLNLSDRKDDPLG  467 (471)
Q Consensus       398 f~~~~~~~~i~~~M~~p~~f~~~~~vl~~~~~~~~~~y~~~g~~gY~~fG~~~~~~i~~~~p~~~~~~~~  467 (471)
                      |+.|..+|++|.+|++|++|+.   +++++.+.+.++...+|.+||++|||++++.|+.|+|+++.+.+.
T Consensus       315 YTSqIFLP~LEGNM~~ps~Fn~---Ml~WsHIAAaVfK~~Fg~~~fLTf~~~TqevItnnLp~qsfk~~V  381 (524)
T KOG4303|consen  315 YTSQIFLPNLEGNMKNPSQFNV---MLKWSHIAAAVFKVVFGMLGFLTFGELTQEVITNNLPNQSFKILV  381 (524)
T ss_pred             eeceeeccccccccCChhHhee---eeehHHHHHHHHHHHHHHheeeeechhhHHHHhcCCCccchhhhh
Confidence            9999999999999999999998   899999999999999999999999999999999999987766543

>COG0814 SdaC Amino acid permeases [Amino acid transport and metabolism]

Probab=99.62  E-value=2.1e-15  Score=153.30  Aligned_cols=260  Identities=15%  Similarity=0.130  Sum_probs=182.2

Q ss_pred             EeeeecccchhhHHhhHhhHHHHHHhhc-cC-cchHHHHHHHHHHHHHHHhhccccchhhHHHHHHHHHHHHhheeeeee
Q psy14360          3 VIITQLGFCCVYFVFVAQSSHQICLALD-ID-YKLHYHMAIMLAPILFTAMIRNLKYIAPISAVANLIMGLGIAAIYYYI   80 (471)
Q Consensus         3 i~~~~~G~~~~y~i~~~~~l~~~~~~~~-~~-~~~~~~~~i~~~~~~pl~~~~~l~~l~~~S~~~~~~~~~~~~~v~~~~   80 (471)
                      +.+.++|.+.+|.+..||.+++.++... .+ .+++.+.++...++.++++.++...++..|.+....+.+.++...+..
T Consensus        94 ~~~~~~~~~~aY~~~~g~~l~~~~~~~~~~~~~~r~~~~lif~~~~~~l~~~~~~~~lk~ts~l~~~~v~~~~~l~~~~~  173 (415)
T COG0814          94 YFFALYGLLVAYIVGIGNLLASFLGNQFGLNPLPRKLGSLIFALVLAFLSWLGTLAVLKITSLLVFGKVIYLVLLVVYLI  173 (415)
T ss_pred             HHHHHHHHHHHHHhcchhHHHHHHHhhcccCCcchHHHHHHHHHHHHHHHHhchhHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            4567899999999999999999999744 23 678888888888888999999999999999999888877666555544


Q ss_pred             cccCCC-CCCCCc--cccccchhHHHHHHHHhhccceeeecchhhcccccC--CCcccchhhhHHHHHHHHHHHHhhhhh
Q psy14360         81 LQDLPP-VSTRNY--VGHIQQIPLFFGTVIFAFEGIALVLPLQREMKKKKN--FNSSFGVLNMGSILIIALMLSMGFFGY  155 (471)
Q Consensus        81 ~~~~~~-~~~~~~--~~~~~~~~~~~g~~~faf~~~~~~~~i~~~m~~p~~--~~~~~~v~~~s~~~~~~~Y~~~g~~gY  155 (471)
                      ....++ ....+.  ...+..+..+++++.|||+||+++|++++|||++++  .+|   +...+..+..++|..+++++|
T Consensus       174 ~~~~~~~l~~~~~~~~~~~~~~~~~ipv~vfsF~~h~~i~si~~~~~~~~~~~~~k---~~~~~~~~~~vlyi~~~~~~~  250 (415)
T COG0814         174 PHWNPANLFALPSASQSFWKYLLLAIPVFVFSFGFHGNIPSLVNYMRKNSKKAVRK---AILIGSLIALVLYILVGFFVF  250 (415)
T ss_pred             cccCHHHHhcccccchhhHHHHHHHhhHHHhhhhCCccchHHHHHhccchhHHHHH---HHHHHHHHHHHHHHHHHHHHH
Confidence            332111 011111  234556778899999999999999999999998854  777   899999999999999999999


Q ss_pred             hcccCccccceeeecCCCCCChHHHHHHHHHHHHHHHhhccccchhHHHHHH--------------HHhh-hcCCCChhh
Q psy14360        156 LKYGENVKGSITLNLSDRKDDPLALVVVGSIGFGILCTYSLQFYVPVAIIWA--------------ELEE-KYGPFKHPA  220 (471)
Q Consensus       156 ~~fG~~~~~~il~nl~~~~~~~~~~v~~~~~~l~l~~s~pl~~~p~~~~~~~--------------~~~~-~~~~~~~~~  220 (471)
                      ..+|+++.++++++.|+   +......+.....+...++|.+.++...+.-+              .+.+ +.++.+...
T Consensus       251 ~~~~~~~~~~il~~~~~---~~~~l~~~~~~~~~~~~~~~~~~f~~~Ai~tSFlgv~lg~~~~~~~~~~~~~~~~~r~~~  327 (415)
T COG0814         251 GCFGSLVFGNILAAKEQ---NISLLSALAGVINSPILSIALNIFALFAIATSFLGVYLGLFEGLADLFKKSNSKPGRKKT  327 (415)
T ss_pred             HhcCcccHHHHHHccCc---hHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHhCchhhHHHhhhHHHHhccCcccchhh
Confidence            99999999999999987   33333344444444446666666665544222              1111 111111111


Q ss_pred             HH--HHHHHHHHHHHHHHHHHhhcch----hhhhhhhhhhhHhhhhhHHHHhhh
Q psy14360        221 FG--ETILRVSLVLLTCKLALVVVGS----IGFGILCTYSLQFYVPVAIIWAEL  268 (471)
Q Consensus       221 ~~--~~~~r~~~~~~~~~iA~~ip~~----slvGs~~~~~l~fi~P~l~~l~~~  268 (471)
                      +.  ........+......+...|..    +-+|+.....+.++.|...+.|..
T Consensus       328 ~~~~~~~~~i~~l~~~~~~~~~~~~~~~~~~~iga~i~~~ll~~~p~~~~~~~~  381 (415)
T COG0814         328 GLLTFLPPLIFALLYPWGFAIALGYAGGLIATIGAPIIPALLFIKPRKLIYKLP  381 (415)
T ss_pred             hhhhHHHHHHHHHHHHHHHHHHhHhHHHHHHHHHHHHHHHHHHHHHHHhcCCCC
Confidence            22  2333344445555666666654    566777777777777776666654

>KOG1305|consensus

Probab=99.42  E-value=3.6e-14  Score=142.62  Aligned_cols=139  Identities=22%  Similarity=0.308  Sum_probs=111.9

Q ss_pred             HHHHHHHHHHHhhcccCCcchhHHHHHHHHHHHHhhheEEEEeccCC---CCC-ccCcccccccchhhhhhhHhhhcccc
Q psy14360        326 HMAIMLAPILFTAMIRNLKYIAPISAVANLIMGLGIAAIYYYILQDL---PPV-STRNYVGHIQQIPLFFGTVIFAFEGI  401 (471)
Q Consensus       326 ~~~i~~~~~~pl~~~~~l~~ls~~S~~~~~~~~~~~~ii~~~~~~~~---~~~-~~~~~~~~~~~~~~~~g~~~faf~~~  401 (471)
                      |.+....++.|++..|+++++.+.|.++..++...+.++.+......   ++. ...+....++++..++++++|||.||
T Consensus       131 ill~~~~~i~pLsl~k~l~~Lk~tS~~s~~~~~~fv~~vv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pi~~faf~Ch  210 (411)
T KOG1305|consen  131 ILLVLLFIILPLSLLKNLDSLKYTSALSLASVVYFVVLVVYKYFQGPCALGRLSYLVPNLSSFSSLFYALPIFVFAFTCH  210 (411)
T ss_pred             eehHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHhcccccCCcccccCCcchhhhhhhhhhhhheeeecc
Confidence            67788888999999999999999999999998866655555544422   111 11212222367899999999999999


Q ss_pred             ccchhhHHhhhcCCCCCcccchhhhHHHHHHHHHHHHHhhhhhhccCccccceeeccCCCCCCc
Q psy14360        402 ALVLPLQREMKKKKNFNSSFGVLNMGSILIIALMLSMGFFGYLKYGENVKGSITLNLSDRKDDP  465 (471)
Q Consensus       402 ~~~~~i~~~M~~p~~f~~~~~vl~~~~~~~~~~y~~~g~~gY~~fG~~~~~~i~~~~p~~~~~~  465 (471)
                      .+..|+++|||||++.+..+ +.+.+...++++|..+|++||+.|||+++++++.++|+.....
T Consensus       211 ~n~~~i~~El~~~s~~~i~~-v~~~~~~~~~~iy~~~g~~GYL~Fg~~v~~n~l~~~~~~~~~~  273 (411)
T KOG1305|consen  211 SNVFPIYNELKDRSVKKIQR-VSNIAIILATLIYLLTGLFGYLTFGDLVKGNLLHNYDSILNNL  273 (411)
T ss_pred             ccceeeeeeeeCchHHHHHH-HHHHHHHHHHHHHHHHHHhhhheecccchHHHHhcCCcccchh
Confidence            99999999999998744422 7888999999999999999999999999999999999866553

>COG0814 SdaC Amino acid permeases [Amino acid transport and metabolism]

Probab=99.01  E-value=1.4e-10  Score=118.06  Aligned_cols=157  Identities=16%  Similarity=0.182  Sum_probs=123.3

Q ss_pred             CcccccccccccccceeEEEEEEeeecccccchHHHHHHHHHHHHHHhhcccCCcchhHHHHHHHHHHHHhhheEEEEec
Q psy14360        290 GTGKNQQTIPDEIWSVVTITAVQICLALDIDYKLHYHMAIMLAPILFTAMIRNLKYIAPISAVANLIMGLGIAAIYYYIL  369 (471)
Q Consensus       290 ~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~pl~~~~~l~~ls~~S~~~~~~~~~~~~ii~~~~~  369 (471)
                      ..+++++++.++.++.             .+.+++.+.+++..++.++++.++...++..|.++...+...++...+...
T Consensus       108 ~~g~~l~~~~~~~~~~-------------~~~~r~~~~lif~~~~~~l~~~~~~~~lk~ts~l~~~~v~~~~~l~~~~~~  174 (415)
T COG0814         108 GIGNLLASFLGNQFGL-------------NPLPRKLGSLIFALVLAFLSWLGTLAVLKITSLLVFGKVIYLVLLVVYLIP  174 (415)
T ss_pred             cchhHHHHHHHhhccc-------------CCcchHHHHHHHHHHHHHHHHhchhHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence            3466666666664441             126788888999999999999999999999999999887765555554443


Q ss_pred             cCCCC-CccCc-c-cccccchhhhhhhHhhhccccccchhhHHhhhcCCC--CCcccchhhhHHHHHHHHHHHHHhhhhh
Q psy14360        370 QDLPP-VSTRN-Y-VGHIQQIPLFFGTVIFAFEGIALVLPLQREMKKKKN--FNSSFGVLNMGSILIIALMLSMGFFGYL  444 (471)
Q Consensus       370 ~~~~~-~~~~~-~-~~~~~~~~~~~g~~~faf~~~~~~~~i~~~M~~p~~--f~~~~~vl~~~~~~~~~~y~~~g~~gY~  444 (471)
                      ...++ ....+ . ...+.++..++++.+|+|++|+++|+++++|||+++  .+|   +...+..+..++|+..+..+|.
T Consensus       175 ~~~~~~l~~~~~~~~~~~~~~~~~ipv~vfsF~~h~~i~si~~~~~~~~~~~~~k---~~~~~~~~~~vlyi~~~~~~~~  251 (415)
T COG0814         175 HWNPANLFALPSASQSFWKYLLLAIPVFVFSFGFHGNIPSLVNYMRKNSKKAVRK---AILIGSLIALVLYILVGFFVFG  251 (415)
T ss_pred             ccCHHHHhcccccchhhHHHHHHHhhHHHhhhhCCccchHHHHHhccchhHHHHH---HHHHHHHHHHHHHHHHHHHHHH
Confidence            32111 11111 1 356778889999999999999999999999998765  666   8889999999999999999999


Q ss_pred             hccCccccceeeccCCCC
Q psy14360        445 KYGENVKGSITLNLSDRK  462 (471)
Q Consensus       445 ~fG~~~~~~i~~~~p~~~  462 (471)
                      .+|++++++++.+.|+++
T Consensus       252 ~~~~~~~~~il~~~~~~~  269 (415)
T COG0814         252 CFGSLVFGNILAAKEQNI  269 (415)
T ss_pred             hcCcccHHHHHHccCchH
Confidence            999999999999997654

>TIGR00837 araaP aromatic amino acid transport protein

Probab=99.00  E-value=1.4e-09  Score=110.19  Aligned_cols=251  Identities=10%  Similarity=-0.004  Sum_probs=160.7

Q ss_pred             eecccchhhHHhhHhhHHHHHHhhc-cCcchHHHHHHHHHHHHHHHhhccccchhhHHHHHHHHHHHHhheeeeeecccC
Q psy14360          6 TQLGFCCVYFVFVAQSSHQICLALD-IDYKLHYHMAIMLAPILFTAMIRNLKYIAPISAVANLIMGLGIAAIYYYILQDL   84 (471)
Q Consensus         6 ~~~G~~~~y~i~~~~~l~~~~~~~~-~~~~~~~~~~i~~~~~~pl~~~~~l~~l~~~S~~~~~~~~~~~~~v~~~~~~~~   84 (471)
                      ..++.+.+|.+..++.+.+.++... .+.+.+....+...++.++ ..+..|..++++.+.+...+..++........+.
T Consensus        84 ~~~~~~~ay~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~v~~~l-~~~G~~~~~~v~~i~~~~~l~~l~~~ii~~~~~~  162 (381)
T TIGR00837        84 VLYILTYAYISGGGSILSRLIGEYFGFPWSARAIVLIFTVLFGSF-VWLSTSAVDRITRVLIFGKIIAFALVFSGLLPHV  162 (381)
T ss_pred             HHHHHHHHHHHccHHHHHHHHHHhcCCCccHHHHHHHHHHHHHHH-HHhchhHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence            4566788899999999999887532 3345444443333344443 4456677777777666655544333222222111


Q ss_pred             C--CCCCCCc-cccccchhHHHHHHHHhhccceeeecchhhcc-cccCCCcccchhhhHHHHHHHHHHHHhhhhhhcccC
Q psy14360         85 P--PVSTRNY-VGHIQQIPLFFGTVIFAFEGIALVLPLQREMK-KKKNFNSSFGVLNMGSILIIALMLSMGFFGYLKYGE  160 (471)
Q Consensus        85 ~--~~~~~~~-~~~~~~~~~~~g~~~faf~~~~~~~~i~~~m~-~p~~~~~~~~v~~~s~~~~~~~Y~~~g~~gY~~fG~  160 (471)
                      +  +..+... ...+.++...++...++|.+|.+++++.+|++ |+||.+|   +...+..++.++|..+........+.
T Consensus       163 ~~~~~~~~~~~~~~~~~~~~a~~~~~~~fg~~~~i~~~~~~~~~~~k~i~r---aii~g~~i~~~lY~l~~~~~~g~~~~  239 (381)
T TIGR00837       163 KGDLLLDVALDTSYWPYILSALPVCLTSFGFHGNVPSLYKYYDGNVKKVKK---SILIGSAIALVLYILWQLATMGNLPR  239 (381)
T ss_pred             cHHHHhcCccccccHHHHHHHHHHHHHHHHcccccHHHHHHhccCHHHHHH---HHHHHHHHHHHHHHHHHHHHhCCCCH
Confidence            1  0000000 11344566778889999999988999999997 5567777   89999999999999886655544432


Q ss_pred             ccc----------cc---eeee-cCCCCCChHHHHHHHHHHHHHHHhhccccchhHHHHHHHHhhhcCCCChhhHHHHHH
Q psy14360        161 NVK----------GS---ITLN-LSDRKDDPLALVVVGSIGFGILCTYSLQFYVPVAIIWAELEEKYGPFKHPAFGETIL  226 (471)
Q Consensus       161 ~~~----------~~---il~n-l~~~~~~~~~~v~~~~~~l~l~~s~pl~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~  226 (471)
                      +.-          ++   ...+ .+   +.+...+...+-.+++..|+.-.....+|...+.+.++.+ +++    |...
T Consensus       240 ~~l~~~~~~~~~~~~l~~~~~~~~~---~~~~~~~v~~~~~~al~tS~~g~~l~~~d~l~~~~~~~~~-~~~----~~~~  311 (381)
T TIGR00837       240 SEFLPIIAKGGNLDGLVNALQGVLK---SSAIELALELFSNFALASSFLGVTLGLFDYLADLFKFDDS-KKG----RFKT  311 (381)
T ss_pred             HHHHHHHHcCCChHHHHHHHHHhcc---chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcc-cCC----Cchh
Confidence            211          11   1111 12   2345667778888888888887777777776665554322 111    2334


Q ss_pred             HHHHHHHHHHHHHhhcch-----hhhhhhhhhhhHhhhhhHHHHhhhc
Q psy14360        227 RVSLVLLTCKLALVVVGS-----IGFGILCTYSLQFYVPVAIIWAELE  269 (471)
Q Consensus       227 r~~~~~~~~~iA~~ip~~-----slvGs~~~~~l~fi~P~l~~l~~~~  269 (471)
                      .....+...++|...|+.     +..| +.++.+.+++|+++.+|.|+
T Consensus       312 ~~~~~~~pl~~a~~~p~~~~~~l~~~G-~~~~~~~~~~p~l~~~~~r~  358 (381)
T TIGR00837       312 GLLTFLPPLVFALFYPEGFLYAIGYAG-LAATIWAVIIPALLAWKARK  358 (381)
T ss_pred             hhhhHHhHHHHHHHhhHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHh
Confidence            556667788899999984     8888 88999999999999999773

aromatic amino acid transporters and includes the tyrosine permease, TyrP, of E. coli, and the tryptophan transporters TnaB and Mtr of E. coli.

>PF03222 Trp_Tyr_perm: Tryptophan/tyrosine permease family; InterPro: IPR018227 Amino acid permeases are integral membrane proteins involved in the transport of amino acids into the cell

Probab=98.52  E-value=9.7e-07  Score=89.50  Aligned_cols=252  Identities=13%  Similarity=0.088  Sum_probs=150.6

Q ss_pred             eeecccchhhHHhhHhhHHHHHHhhc-cCcchHHHHHHHHHHHHHHHhhccccchhhHHHHHHHHHHHHhheeeeeeccc
Q psy14360          5 ITQLGFCCVYFVFVAQSSHQICLALD-IDYKLHYHMAIMLAPILFTAMIRNLKYIAPISAVANLIMGLGIAAIYYYILQD   83 (471)
Q Consensus         5 ~~~~G~~~~y~i~~~~~l~~~~~~~~-~~~~~~~~~~i~~~~~~pl~~~~~l~~l~~~S~~~~~~~~~~~~~v~~~~~~~   83 (471)
                      +..++.+++|..-.|+.+++.++... .+.+.+.-..++..+...+... ..|...+.+.+-+...+..++......+.+
T Consensus        89 ~~~y~ll~AYisg~g~~~~~~l~~~~~~~~~~~~~~~~f~~i~~~iv~~-g~~~v~~~n~~lv~~~i~~~~~l~~~~~p~  167 (394)
T PF03222_consen   89 FLLYALLVAYISGGGSILSSLLGNQLGTDLSPWLSSLLFTIIFGGIVYF-GTKAVDRINRVLVFGMIISFIILVVYLIPH  167 (394)
T ss_pred             HHHHHHHHHHHHccHHHHHHHHHHhcCCCCcHHHHHHHHHHHHHHHHHh-hHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence            34566788999999999999998765 3444444333333332222222 222333333322222222222222221111


Q ss_pred             C--CCCCC-CCccccccchhHHHHHHHHhhccceeeecchhhcc-cccCCCcccchhhhHHHHHHHHHHHH--hhhhhh-
Q psy14360         84 L--PPVST-RNYVGHIQQIPLFFGTVIFAFEGIALVLPLQREMK-KKKNFNSSFGVLNMGSILIIALMLSM--GFFGYL-  156 (471)
Q Consensus        84 ~--~~~~~-~~~~~~~~~~~~~~g~~~faf~~~~~~~~i~~~m~-~p~~~~~~~~v~~~s~~~~~~~Y~~~--g~~gY~-  156 (471)
                      .  +...+ .+...++......+++..+||..|..+|++.+.++ |++|.+|   ++..+..+..++|+..  .+.|-+ 
T Consensus       168 ~~~~~L~~~~~~~~~~~~~~~~lPv~~~Sf~f~~ivPsl~~~~~~d~~k~~~---ai~~Gs~i~lv~yl~w~~~~lg~l~  244 (394)
T PF03222_consen  168 WNPSNLLDAPPSPSDWSYILPALPVLVFSFGFHNIVPSLVKYLGGDPKKIRK---AIIIGSLIPLVMYLLWVFSILGSLP  244 (394)
T ss_pred             cCHHHhhccccccccHHHHHHHHHHHHHHHHHHhhhHHHHHHhCccHHHHHH---HHHHHHHHHHHHHHHHHHHHHhcCC
Confidence            1  11111 11234566677889999999999999999999998 5567777   8888888888888765  333311 


Q ss_pred             --------cccCcccc--ceeeecCCCCCChHHHHHHHHHHHHHHHhhccccchhHHHHHHHHhhhcCCCChhhHHHHHH
Q psy14360        157 --------KYGENVKG--SITLNLSDRKDDPLALVVVGSIGFGILCTYSLQFYVPVAIIWAELEEKYGPFKHPAFGETIL  226 (471)
Q Consensus       157 --------~fG~~~~~--~il~nl~~~~~~~~~~v~~~~~~l~l~~s~pl~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~  226 (471)
                              .-+++..+  ..+.+..+  +.....+..+.-.+++..||-=...-.+|.+...++.  +++.   ..|...
T Consensus       245 ~~~~~~~~~~~~~~~~~~~~~~~~~~--s~~i~~~~~~fa~~Ai~TSFlGv~lgl~d~l~d~~k~--~~~~---~~r~~~  317 (394)
T PF03222_consen  245 REQFAEAIAQGGNVSALVSALANVSG--SPWISILGSIFAFFAIATSFLGVYLGLFDFLADLFKL--KNNS---SGRLKT  317 (394)
T ss_pred             HHHHHHHHhcCCChHHHHHHHHhhcC--CcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC--Cccc---cchHHH
Confidence                    11111111  12223322  3456667788888888888765555666776665543  1111   122333


Q ss_pred             HHHHHHHHHHHHHhhcch-----hhhhhhhhhhhHhhhhhHHHHhhh
Q psy14360        227 RVSLVLLTCKLALVVVGS-----IGFGILCTYSLQFYVPVAIIWAEL  268 (471)
Q Consensus       227 r~~~~~~~~~iA~~ip~~-----slvGs~~~~~l~fi~P~l~~l~~~  268 (471)
                      .........++|...|+.     ++.| ...+.+..++|+++.+|.+
T Consensus       318 ~~ltf~ppl~~a~~~p~~F~~al~~aG-~~~~il~~ilP~~m~~~~r  363 (394)
T PF03222_consen  318 WLLTFLPPLIFALLFPNGFLIALGYAG-IGIAILLGILPALMVWKAR  363 (394)
T ss_pred             HHHHHHhHHHHHHHCcHHHHHHHHhhc-HHHHHHHHHHHHHHHHHHH
Confidence            444556678889999994     8999 9999999999999999988

A number of such proteins have been found to be evolutionary related [, , ]. Aromatic amino acids are concentrated in the cytoplasm of Escherichia coli by 4 distinct transport systems: a general aromatic amino acid permease, and a specific permease for each of the 3 types (Phe, Tyr and Trp) []. It has been shown [] that some permeases in E. coli and related bacteria are evolutionary related. These permeases are proteins of about 400 to 420 amino acids and are located in the cytoplasmic membrane and, like bacterial sugar/cation transporters, are thought to contain 12 transmembrane (TM) regions [] - hydropathy analysis, however, is inconclusive, suggesting the possibility of 10 to 12 membrane-spanning domains []. The best conserved domain is a stretch of 20 residues which seems to be located in a cytoplasmic loop between the first and second transmembrane region.

>PRK10483 tryptophan permease; Provisional

Probab=98.16  E-value=9.4e-06  Score=81.97  Aligned_cols=254  Identities=13%  Similarity=0.048  Sum_probs=148.2

Q ss_pred             eeecccchhhHHhhHhhHHHHHHhhccCcchHHHHHHHHHHHHHHHhh--ccccchhhHHHHHHHHHHHHhheeeeeecc
Q psy14360          5 ITQLGFCCVYFVFVAQSSHQICLALDIDYKLHYHMAIMLAPILFTAMI--RNLKYIAPISAVANLIMGLGIAAIYYYILQ   82 (471)
Q Consensus         5 ~~~~G~~~~y~i~~~~~l~~~~~~~~~~~~~~~~~~i~~~~~~pl~~~--~~l~~l~~~S~~~~~~~~~~~~~v~~~~~~   82 (471)
                      +..++-+.+|+-=.||.+++.++....+.+++.-.+++.++.-...+.  |..+++...=..+.+..+...+....-.++
T Consensus        97 fl~Y~Ll~AYisg~g~il~~~l~~~~~~i~~~~~~llF~~~~~~iv~~gt~~vd~~n~~l~~~~i~~f~~~~~~l~~~i~  176 (414)
T PRK10483         97 FVLYILTYAYISASGSILHHTFAEMSLNVPARAAGFGFALLVAFVVWLSTKAVSRMTAIVLGAKVITFFLTFGSLLGHVQ  176 (414)
T ss_pred             HHHHHHHHHHHhCcHHHHHHHHHhcCCCCcHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhhcC
Confidence            345677889999999999999976432345444334444444444443  333333333333333333222211111111


Q ss_pred             c--CCCCCCCCccccccchhHHHHHHHHhhccceeeecchhhccc-ccCCCcccchhhhHHHHHHHHHHHHhhhhhhc--
Q psy14360         83 D--LPPVSTRNYVGHIQQIPLFFGTVIFAFEGIALVLPLQREMKK-KKNFNSSFGVLNMGSILIIALMLSMGFFGYLK--  157 (471)
Q Consensus        83 ~--~~~~~~~~~~~~~~~~~~~~g~~~faf~~~~~~~~i~~~m~~-p~~~~~~~~v~~~s~~~~~~~Y~~~g~~gY~~--  157 (471)
                      .  .-+.+ ......+.......+++.+||+.|.++|++.+.+++ ++|.+|   ++..+..+-.++|+..=...-..  
T Consensus       177 ~~~L~~~~-~~~~~~~~~~~~alPvl~~SFgfh~iIPsl~~y~~~d~~kir~---~I~iGs~Iplv~yl~W~~~~lg~l~  252 (414)
T PRK10483        177 PATLFNVA-ESNASYAPYLLMTLPFCLASFGYHGNVPSLMKYYGKDPKTIVK---CLVYGTLMALALYTIWLLATMGNIP  252 (414)
T ss_pred             HHHHhccc-cccchhHHHHHHHHHHHHhhccCCCcchHHHHHhCcCHHHHHH---HHHHHHHHHHHHHHHHHHHHhcCCC
Confidence            0  00100 011112334667889999999999999999999875 467777   88899999888888743222221  


Q ss_pred             ---------ccCccccceeeecCCC-CCChHHHHHHHHHHHHHHHhhccccchhHHHHHHHHhhhcCCCChhhHHHHHHH
Q psy14360        158 ---------YGENVKGSITLNLSDR-KDDPLALVVVGSIGFGILCTYSLQFYVPVAIIWAELEEKYGPFKHPAFGETILR  227 (471)
Q Consensus       158 ---------fG~~~~~~il~nl~~~-~~~~~~~v~~~~~~l~l~~s~pl~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~r  227 (471)
                               -|+++ +..+..+.+. ++.....+..+.-.+++..||-=...-..|.+...++.+.+  .   ..|....
T Consensus       253 ~~~~~~~~~~~~ni-~~L~~~l~~~~~~~~i~~~~~~Fa~~Ai~TSFlGv~LGL~d~l~D~~k~~~~--~---~~r~~~~  326 (414)
T PRK10483        253 RPEFIGIAEKGGNI-DVLVQALSGVLNSRSLDLLLVVFSNFAVASSFLGVTLGLFDYLADLFGFDDS--A---MGRFKTA  326 (414)
T ss_pred             HHHHHHHHHcCCCh-HHHHHHHHHhcCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCc--c---ccceeee
Confidence                     12222 1111122111 12455567777777788777654444556666655543221  1   1222234


Q ss_pred             HHHHHHHHHHHHhhcch-----hhhhhhhhhhhHhhhhhHHHHhhhc
Q psy14360        228 VSLVLLTCKLALVVVGS-----IGFGILCTYSLQFYVPVAIIWAELE  269 (471)
Q Consensus       228 ~~~~~~~~~iA~~ip~~-----slvGs~~~~~l~fi~P~l~~l~~~~  269 (471)
                      ....+...++|...|+.     +..|.. .+.+.-++|+++-+|.|+
T Consensus       327 ~ltflPPl~~al~~P~~Fl~AL~yAG~~-~~il~~ilP~lM~~~~Rk  372 (414)
T PRK10483        327 LLTFLPPVVGGLLFPNGFLYAIGYAGLA-ATIWAAIVPALLARASRK  372 (414)
T ss_pred             hhhHhhHHHHHHHhHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHh
Confidence            45667888999999993     888865 777778999999999873

>PRK15132 tyrosine transporter TyrP; Provisional

Probab=98.07  E-value=2.8e-05  Score=78.80  Aligned_cols=248  Identities=9%  Similarity=0.036  Sum_probs=144.7

Q ss_pred             eecccchhhHHhhHhhHHHHHHhhc-cCcchHHHHHHHHHHHHHHHhh--ccccchhhHHHHHHHHHHHHhheeeeeecc
Q psy14360          6 TQLGFCCVYFVFVAQSSHQICLALD-IDYKLHYHMAIMLAPILFTAMI--RNLKYIAPISAVANLIMGLGIAAIYYYILQ   82 (471)
Q Consensus         6 ~~~G~~~~y~i~~~~~l~~~~~~~~-~~~~~~~~~~i~~~~~~pl~~~--~~l~~l~~~S~~~~~~~~~~~~~v~~~~~~   82 (471)
                      ..++.+.+|..-.||.+++.++++. .+.+.+...+.+.++.....+.  |-..+....=..+.+..+....   .+.. 
T Consensus        90 l~y~ll~AYisg~g~il~~~l~~~~~~~i~~~~~~l~F~~~~~~iv~~g~~~v~~~n~~L~~~~ii~~~~~~---~~l~-  165 (403)
T PRK15132         90 LMYALTAAYISGAGELLASSISDWTGISMSPTAGVLLFTLVAGGVVCVGTSSVDLFNRFLFSAKIIFLVVML---ALMM-  165 (403)
T ss_pred             HHHHHHHHHHhCcHHHHHHHHHHhccCCCChHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHH---HHHH-
Confidence            3566788999999999999887643 2334443333333322222222  2222222222222222221111   1111 


Q ss_pred             cCCCCCCCCcc---ccccchhHHHHHHHHhhccceeeecchhhcccc-cCCCcccchhhhHHHHHHHHHHHHhhhhhhcc
Q psy14360         83 DLPPVSTRNYV---GHIQQIPLFFGTVIFAFEGIALVLPLQREMKKK-KNFNSSFGVLNMGSILIIALMLSMGFFGYLKY  158 (471)
Q Consensus        83 ~~~~~~~~~~~---~~~~~~~~~~g~~~faf~~~~~~~~i~~~m~~p-~~~~~~~~v~~~s~~~~~~~Y~~~g~~gY~~f  158 (471)
                        |+++.....   .+.+.....++++.+||+.|..+|++.+.+++. +|.+|   +...+..+-.++|+..=......-
T Consensus       166 --p~~~~~~L~~~~~~~~~~~~~iPvl~~SFgfh~iIpsl~~y~~~~~~~~~k---~i~~Gs~i~li~yl~W~~~~lg~l  240 (403)
T PRK15132        166 --PHIHKVNLLTLPLQQGLALSAIPVIFTSFGFHGSVPSIVSYMGGNIRKLRW---VFIIGSAIPLVAYIFWQLATLGSI  240 (403)
T ss_pred             --HhcCHHHHhcCCccccHHHHHHHHHHHHhhCCcccHHHHHHhCcCHHHHHH---HHHHHHHHHHHHHHHHHHHHHhCC
Confidence              111110000   011236778899999999999999999998754 66777   888888888888886644444333


Q ss_pred             cCc-----ccc-----ceeeecCCC-CCChHHHHHHHHHHHHHHHhhccccchhHHHHHHHHhhhcCCCChhhHHHHHHH
Q psy14360        159 GEN-----VKG-----SITLNLSDR-KDDPLALVVVGSIGFGILCTYSLQFYVPVAIIWAELEEKYGPFKHPAFGETILR  227 (471)
Q Consensus       159 G~~-----~~~-----~il~nl~~~-~~~~~~~v~~~~~~l~l~~s~pl~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~r  227 (471)
                      +.+     .++     +++..+.+. .+.+...++...-.+++..||-=...-..|.+...+.++.++     ..|....
T Consensus       241 ~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~fa~~Ai~TSFlGv~lgl~d~l~d~~~~~~~~-----~~r~~~~  315 (403)
T PRK15132        241 DSTTFMGLLANHAGLNGLLQALREVVASPHVELAVHLFADLALATSFLGVALGLFDYLADLFQRRNTV-----GGRLQTG  315 (403)
T ss_pred             CHHHHHHHHHccCchHHHHHHHHHHccChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCccc-----cCCchhe
Confidence            322     111     222222211 134566677777777777776554555566666555432221     1234455


Q ss_pred             HHHHHHHHHHHHhhcch-----hhhhhhhhhhhHhhhhhHHHHhhh
Q psy14360        228 VSLVLLTCKLALVVVGS-----IGFGILCTYSLQFYVPVAIIWAEL  268 (471)
Q Consensus       228 ~~~~~~~~~iA~~ip~~-----slvGs~~~~~l~fi~P~l~~l~~~  268 (471)
                      ....+...++|...|+.     +..|. ..+.+.+++|+++-+|.+
T Consensus       316 ~l~flppli~a~~~P~~F~~al~~aG~-~~ail~~ilP~~m~~~~r  360 (403)
T PRK15132        316 LITFLPPLAFALFYPRGFVMALGYAGV-ALAVLALLLPSLLVWQSR  360 (403)
T ss_pred             hhhHHHHHHHHHHhHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHh
Confidence            67778889999999995     77775 578899999999999987

>TIGR00814 stp serine transporter

Probab=98.03  E-value=0.00012  Score=74.18  Aligned_cols=258  Identities=14%  Similarity=0.104  Sum_probs=148.1

Q ss_pred             cccchhhHHhhHhhHHHHHHhhc-cCcchHHHHHHHHHHHHHHHhhccccchhhHHHHHHHHHHHHhheeeeeecccC--
Q psy14360          8 LGFCCVYFVFVAQSSHQICLALD-IDYKLHYHMAIMLAPILFTAMIRNLKYIAPISAVANLIMGLGIAAIYYYILQDL--   84 (471)
Q Consensus         8 ~G~~~~y~i~~~~~l~~~~~~~~-~~~~~~~~~~i~~~~~~pl~~~~~l~~l~~~S~~~~~~~~~~~~~v~~~~~~~~--   84 (471)
                      +..+.+|..-.++.+.+.+.... .+-+.+....+..+..+-.......+.+.+.+.+-+...+...+....+...+.  
T Consensus        93 ~~i~~aY~~~~~~~~~~fl~~~~~~~~p~~~i~~lilv~il~~iv~~G~~~i~r~~~il~~~~ii~l~~l~~~lip~~~~  172 (397)
T TIGR00814        93 YPILLIYSVAITNDSASFLVNQLGTAPPLRGLLSLALILILVAIMSFGEKLLFKIMGPLVFPLVLILVLLSLYLIPHWNG  172 (397)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCH
Confidence            33456777777777777766532 223334333333333323344446666666666554333333333332222211  


Q ss_pred             CCCCCCCcc-ccccchhHHHHHHHHhhccceeeecchh----hcccc----cCCCcccchhhhHHHHHHHHHHHHhhhhh
Q psy14360         85 PPVSTRNYV-GHIQQIPLFFGTVIFAFEGIALVLPLQR----EMKKK----KNFNSSFGVLNMGSILIIALMLSMGFFGY  155 (471)
Q Consensus        85 ~~~~~~~~~-~~~~~~~~~~g~~~faf~~~~~~~~i~~----~m~~p----~~~~~~~~v~~~s~~~~~~~Y~~~g~~gY  155 (471)
                      ....+.+.. ..+.+...+.+...+||.+|..+++...    |.+||    +|.+|   ++..+..+..++|+..-+..-
T Consensus       173 ~~L~~~p~~~~~~~~i~~alpv~~~SF~~~~iIssl~~~~~~~~~~~~~~~~k~~k---~i~~~~~i~~~~y~~~~~s~~  249 (397)
T TIGR00814       173 ANLTTFPSFNGFLKTLWLTIPVMVFSFNHSPIISSFAISYREEYGDKEFAERKCLR---IMKGASLILVATVMFFVFSCV  249 (397)
T ss_pred             HHHhcCCcccchHHHHHHHHHHHHHHHHccccchHHHHHHHHHcCCcchHHHHHHH---HHHHHHHHHHHHHHHHHHHHh
Confidence            111111111 1234577888999999999999999973    33322    34455   888888888888877766655


Q ss_pred             hcccCcc-----ccc--eeeecCCC-CCChHHHHHHHHHHHHHHHhhccccchhHHHHHHHHhh---hcCCCChhhHHHH
Q psy14360        156 LKYGENV-----KGS--ITLNLSDR-KDDPLALVVVGSIGFGILCTYSLQFYVPVAIIWAELEE---KYGPFKHPAFGET  224 (471)
Q Consensus       156 ~~fG~~~-----~~~--il~nl~~~-~~~~~~~v~~~~~~l~l~~s~pl~~~p~~~~~~~~~~~---~~~~~~~~~~~~~  224 (471)
                      ...+++.     ++|  .+..+.+. .+.....+....-.+++..|+-=+..-.+|.+...+.+   ..+++.+++..+.
T Consensus       250 ~~l~~~~~~~a~~~nis~Ls~l~~~~~~~~i~~~~~~f~~~Ai~tSFlG~~lg~~e~l~~l~~~~~~~~~~~~~~~~~~~  329 (397)
T TIGR00814       250 LSLSPAEAVAAKEQNISILSYLANHFNAAWISYAGPIVAIVAISKSFFGHYLGAREGLNGIVLNSLKMKGKKINIRKLNR  329 (397)
T ss_pred             ccCCHHHHHHHHHcCcHHHHHHHhhcCCcHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhcccccccCHHHHHH
Confidence            5555322     122  12211111 12455566666667777777776667777877776632   1122222234455


Q ss_pred             HHHHHHHHHHHHHHHhhcch-hhhhhhhh---hhhHhhhhhHHHHhhh
Q psy14360        225 ILRVSLVLLTCKLALVVVGS-IGFGILCT---YSLQFYVPVAIIWAEL  268 (471)
Q Consensus       225 ~~r~~~~~~~~~iA~~ip~~-slvGs~~~---~~l~fi~P~l~~l~~~  268 (471)
                      ....+..+.++.+|..=|++ +++.++++   ..+.|++|...-.|.-
T Consensus       330 ~~~~~~~~~~w~~~~~n~~il~~i~~~~gp~~a~i~~~~p~~~~~~v~  377 (397)
T TIGR00814       330 AIAIFIVLTTWIVAYINPSILSFIEALGGPIIAMILFLMPMYAIYKVP  377 (397)
T ss_pred             HHHHHHHHHHHHHHHhCccHHHHHHHhhHHHHHHHHHHHHHHHHHccH
Confidence            66677788999999999998 77666666   5566888987777764

The HAAAP family includes well characterized aromatic amino acid:H+ symport permeases and hydroxy amino acid permeases. This subfamily is specific for hydroxy amino acid transporters and includes the serine permease, SdaC, of E. coli, and the threonine permease, TdcC, of E. coli.

>PRK09664 tryptophan permease TnaB; Provisional

Probab=97.81  E-value=0.00015  Score=73.31  Aligned_cols=250  Identities=9%  Similarity=0.011  Sum_probs=140.6

Q ss_pred             eecccchhhHHhhHhhHHHHHHhh-ccCcchHHHHHHHHHHHHHHHhhc--cccchhhHHHHHHHHHHHHhheeeeeecc
Q psy14360          6 TQLGFCCVYFVFVAQSSHQICLAL-DIDYKLHYHMAIMLAPILFTAMIR--NLKYIAPISAVANLIMGLGIAAIYYYILQ   82 (471)
Q Consensus         6 ~~~G~~~~y~i~~~~~l~~~~~~~-~~~~~~~~~~~i~~~~~~pl~~~~--~l~~l~~~S~~~~~~~~~~~~~v~~~~~~   82 (471)
                      ..++-+.+|+-=.||.+++.++.. ..+.+.+.-.++++.+.-+..+..  ..+++...=..+.+..+...+....-.++
T Consensus        96 l~Y~Ll~AYisggG~il~~~l~~~~~~~i~~~~~~llF~~~~~~~v~~gt~~vd~~nr~l~~~~ii~f~~~~~~l~~~i~  175 (415)
T PRK09664         96 VLYILTYAYISANGAIISETISMNLGYHANPRIVGICTAIFVASVLWISSLAASRITSLFLGLKIISFVIVFGSFFFQVD  175 (415)
T ss_pred             HHHHHHHHHHhccHHHHHHHHhhhccCCCcHHHHHHHHHHHHHHHHHhchhHHHHHHHHHHHHHHHHHHHHHHHHhhccc
Confidence            456678899999999999998752 223444443344444444444433  33333333333322222221211111111


Q ss_pred             cCCCCCCCCccc----cccchhHHHHHHHHhhccceeeecchhhcccc-cCCCcccchhhhHHHHHHHHHHHH--hhhhh
Q psy14360         83 DLPPVSTRNYVG----HIQQIPLFFGTVIFAFEGIALVLPLQREMKKK-KNFNSSFGVLNMGSILIIALMLSM--GFFGY  155 (471)
Q Consensus        83 ~~~~~~~~~~~~----~~~~~~~~~g~~~faf~~~~~~~~i~~~m~~p-~~~~~~~~v~~~s~~~~~~~Y~~~--g~~gY  155 (471)
                      . ....+.+...    ........++++.+||+.|+++|++.+.+++. +|.+|   +......+-.++|..-  .+.|-
T Consensus       176 ~-~~L~~~~~~~~~~~~~~~i~~alPVl~~SFgfh~iIPsl~~y~~~d~~~~~k---aIl~Gs~IpLviY~~W~~~ilG~  251 (415)
T PRK09664        176 Y-SILRDATSTTAGTSYFPYIFMALPVCLASFGFHGNIPSLIICYGKRKDKLIK---SVVFGSLLALVIYLFWLYCTMGN  251 (415)
T ss_pred             H-HHHhcCccccccchHHHHHHHHHHHHHHhhhCCCcchHHHHHhCccHHHHHH---HHHHHHHHHHHHHHHHHHHHhcC
Confidence            0 0001111111    02235668899999999999999999988744 56666   6666666666677433  23331


Q ss_pred             ---------hcccCcccccee---eecCCCCCChHHHHHHHHHHHHHHHhhccccchhHHHHHHHHhhhcCCCChhhHHH
Q psy14360        156 ---------LKYGENVKGSIT---LNLSDRKDDPLALVVVGSIGFGILCTYSLQFYVPVAIIWAELEEKYGPFKHPAFGE  223 (471)
Q Consensus       156 ---------~~fG~~~~~~il---~nl~~~~~~~~~~v~~~~~~l~l~~s~pl~~~p~~~~~~~~~~~~~~~~~~~~~~~  223 (471)
                               .+.|+++.+.+.   .+.+   +.+...+..+.-.+++..||-=...-..|.+...++.+.+  .   ..|
T Consensus       252 lp~~~~~~~~~~g~nv~~l~~s~~~~~~---~~~i~~~~~~Fa~~Ai~TSFlGv~LGL~D~l~D~~~~~~~--~---~~r  323 (415)
T PRK09664        252 IPRESFKAIISSGGNVDSLVKSFLGTKQ---HGIIEFCLLVFSNLAVASSFFGVTLGLFDYLADLFKIDNS--H---GGR  323 (415)
T ss_pred             CCHHHHHHHHHcCCCchHHHHHHHhhcc---ChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCc--c---ccc
Confidence                     122222222111   1212   3466667777777778777654444555665554433221  1   122


Q ss_pred             HHHHHHHHHHHHHHHHhhcc-h----hhhhhhhhhhhHhhhhhHHHHhhh
Q psy14360        224 TILRVSLVLLTCKLALVVVG-S----IGFGILCTYSLQFYVPVAIIWAEL  268 (471)
Q Consensus       224 ~~~r~~~~~~~~~iA~~ip~-~----slvGs~~~~~l~fi~P~l~~l~~~  268 (471)
                      ........+...++|...|+ |    +.-|.. .+.+.-++|+++-+|.|
T Consensus       324 ~~~~~ltflPPl~~al~~P~gFl~AL~yAG~~-~~il~~ilP~lM~~~~R  372 (415)
T PRK09664        324 FKTVLLTFLPPALLYLIFPNGFIYGIGGAGLC-ATIWAVIIPAVLAIKAR  372 (415)
T ss_pred             eeeehhhHhhhHHHHHHhhHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHh
Confidence            33344566778899999999 4    887875 66888899999999987

>PRK13629 threonine/serine transporter TdcC; Provisional

Probab=97.45  E-value=0.0021  Score=65.32  Aligned_cols=167  Identities=12%  Similarity=0.061  Sum_probs=107.3

Q ss_pred             hhHHHHHHHHhhccceeeecchhhccc-----------ccCCCcccchhhhHHHHHHHHHHHHhhhhhhcccCcc-----
Q psy14360         99 IPLFFGTVIFAFEGIALVLPLQREMKK-----------KKNFNSSFGVLNMGSILIIALMLSMGFFGYLKYGENV-----  162 (471)
Q Consensus        99 ~~~~~g~~~faf~~~~~~~~i~~~m~~-----------p~~~~~~~~v~~~s~~~~~~~Y~~~g~~gY~~fG~~~-----  162 (471)
                      ....++++.+||+-|+.+|+....+|+           ++|-++   ++..+..+..++|+..-+..-..-+++.     
T Consensus       211 l~~~iPv~v~SF~f~~iIssl~~y~r~~y~~~~~~~~a~~k~~r---ii~~gs~i~lv~y~fwv~S~~gsLs~~~l~~a~  287 (443)
T PRK13629        211 VWLGISIMVFSFNFSPIVSSFVVSKREEYEKDFGRDFTERKCSQ---IISRASMLMVAVVMFFAFSCLFTLSPQNMAEAK  287 (443)
T ss_pred             HHHHHHHHHHHHhccccchHHHHHHHHHhccccccchHHHHHHH---HHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHH
Confidence            556789999999999999999887432           234444   8888888888888877665555444321     


Q ss_pred             ccce--eee----cCCCC-C-----ChHHHHHHHHHHHHHHHhhccccchhHHHHHHHHhh---hc-CCCChhhHHHHHH
Q psy14360        163 KGSI--TLN----LSDRK-D-----DPLALVVVGSIGFGILCTYSLQFYVPVAIIWAELEE---KY-GPFKHPAFGETIL  226 (471)
Q Consensus       163 ~~~i--l~n----l~~~~-~-----~~~~~v~~~~~~l~l~~s~pl~~~p~~~~~~~~~~~---~~-~~~~~~~~~~~~~  226 (471)
                      ++|+  +..    +++.. .     ........+.-.+++..||-=...-.+|.+...+.+   +. +++-.++..+...
T Consensus       288 ~qn~s~Ls~La~~~~~~~~~~~~~~~~i~~~~~ifa~~AI~TSFlGv~LGl~E~l~gl~~~~~~~~~~~~~~~~~~~~~~  367 (443)
T PRK13629        288 AQNIPVLSYLANHFASMTGTKSTFAITLEYAASIIALVAIFKSFFGHYLGTLEGLNGLILKFGYKGDKTKVSLGKLNTIS  367 (443)
T ss_pred             HhCCcHHHHHHHHhhhcccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccCHHHHHHHH
Confidence            1222  211    22200 1     234555666666677777665555677777776632   11 2222223455666


Q ss_pred             HHHHHHHHHHHHHhhcch-hhhhhhhh---hhhHhhhhhHHHHhhh
Q psy14360        227 RVSLVLLTCKLALVVVGS-IGFGILCT---YSLQFYVPVAIIWAEL  268 (471)
Q Consensus       227 r~~~~~~~~~iA~~ip~~-slvGs~~~---~~l~fi~P~l~~l~~~  268 (471)
                      ..+..+.++.+|+.=|++ +++.++++   ..+.|++|...-+|.-
T Consensus       368 ~~~~~~~~w~~~~~np~il~~i~~~~gPiia~il~l~P~y~i~kvp  413 (443)
T PRK13629        368 MIFIMGSTWVVAYANPNILDLIEAMGAPIIASLLCLLPMYAIRKAP  413 (443)
T ss_pred             HHHHHHHHHHHHHhCccHHHHHHHhhhHHHHHHHHHHHHHHHHccH
Confidence            778888999999999998 77666665   5566888987777764

>TIGR00909 2A0306 amino acid transporter

Probab=97.10  E-value=0.008  Score=61.92  Aligned_cols=154  Identities=11%  Similarity=0.070  Sum_probs=86.2

Q ss_pred             HHHHhhccccchhhHHHHHHHHHHHHhheeeeeecc--cCCCCCCCCccccccchhHHHHHHHHhhccceeeecchhhcc
Q psy14360         47 LFTAMIRNLKYIAPISAVANLIMGLGIAAIYYYILQ--DLPPVSTRNYVGHIQQIPLFFGTVIFAFEGIALVLPLQREMK  124 (471)
Q Consensus        47 ~pl~~~~~l~~l~~~S~~~~~~~~~~~~~v~~~~~~--~~~~~~~~~~~~~~~~~~~~~g~~~faf~~~~~~~~i~~~m~  124 (471)
                      .-....+..|..++++.+.....+..++........  +.++.++.. .....++..++....|+|.|........+|+|
T Consensus       144 ~~~l~~~g~~~~~~~~~v~~~~~i~~l~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~af~G~e~~~~~~~E~~  222 (429)
T TIGR00909       144 LTYILYLGAKESGKVNDILVVLKVAALLLFAALGAIHFASNNYTPFM-PMGFGGVGAATALVFFAFIGFEAISTAAEEVK  222 (429)
T ss_pred             HHHHHHhCcHHHHHHHHHHHHHHHHHHHHhhhHHHhhCcHHhcCCCC-CCcHHHHHHHHHHHHHHHhhHHHHHhhHHhcc
Confidence            333445566777777766655444333222211111  111111110 11234566677789999999999999999999


Q ss_pred             ccc-CCCcccchhhhHHHHHHHHHHHHhhhhhhcccCc-c-cc--c---eeeecCCCCCChHHHHHHHHHHHHHHHhhcc
Q psy14360        125 KKK-NFNSSFGVLNMGSILIIALMLSMGFFGYLKYGEN-V-KG--S---ITLNLSDRKDDPLALVVVGSIGFGILCTYSL  196 (471)
Q Consensus       125 ~p~-~~~~~~~v~~~s~~~~~~~Y~~~g~~gY~~fG~~-~-~~--~---il~nl~~~~~~~~~~v~~~~~~l~l~~s~pl  196 (471)
                      ||+ +.+|   ++..+..++.++|..........-..+ . ++  +   +..+..   .++...+..+...++.+.+.--
T Consensus       223 ~p~r~ip~---ai~~~~~~~~v~Yil~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~i~~~~~~~~~~~~  296 (429)
T TIGR00909       223 NPERDIPK---AIILSLIVVTLLYVLVAAVILGAVPWRQLAGSTAPLSLVGYDLG---QGIGGLILTAGAVFSIASVMLA  296 (429)
T ss_pred             CccccccH---HHHHHHHHHHHHHHHHHHHHhcCcCHHHhCCCCcHHHHHHHHhC---chHHHHHHHHHHHHHHHHHHHH
Confidence            995 5788   899999999999998865544322211 1 11  0   011111   2344455666666666666544


Q ss_pred             ccchhHHHHHH
Q psy14360        197 QFYVPVAIIWA  207 (471)
Q Consensus       197 ~~~p~~~~~~~  207 (471)
                      ......+.++.
T Consensus       297 ~~~~~sR~~~~  307 (429)
T TIGR00909       297 GIYGTSRVLFA  307 (429)
T ss_pred             HHHHHHHHHHH
Confidence            44444455443

>PRK11021 putative transporter; Provisional

Probab=97.04  E-value=0.017  Score=59.16  Aligned_cols=55  Identities=20%  Similarity=0.313  Sum_probs=47.6

Q ss_pred             ccchhHHHHHHHHhhccceeeecchhhccccc-CCCcccchhhhHHHHHHHHHHHHhhh
Q psy14360         96 IQQIPLFFGTVIFAFEGIALVLPLQREMKKKK-NFNSSFGVLNMGSILIIALMLSMGFF  153 (471)
Q Consensus        96 ~~~~~~~~g~~~faf~~~~~~~~i~~~m~~p~-~~~~~~~v~~~s~~~~~~~Y~~~g~~  153 (471)
                      +.++...+....|+|.|-......-+|+|||+ +.+|   .+..+...+.++|......
T Consensus       176 ~~~~~~~~~~~~~af~G~e~~~~~a~E~k~P~k~iPr---Ai~~~~~~~~~lYil~~~~  231 (410)
T PRK11021        176 WSGLFAALGVMFWCFVGIEAFAHLASEFKNPERDFPR---ALMIGLLLAGLVYWACTVV  231 (410)
T ss_pred             HHHHHHHHHHHHHHHhcHHHHHhhHHhccCccccccH---HHHHHHHHHHHHHHHHHHH
Confidence            45566778889999999999999999999995 5888   8999999999999988654

>PRK10197 gamma-aminobutyrate transporter; Provisional

Probab=96.54  E-value=0.15  Score=52.92  Aligned_cols=166  Identities=14%  Similarity=0.068  Sum_probs=90.2

Q ss_pred             cchhHHHHHHHHhhccceeeecchhhcccccC-CCcccchhhhHHHHHHHHHHHHhhhhhhcccCc-cc----c---cee
Q psy14360         97 QQIPLFFGTVIFAFEGIALVLPLQREMKKKKN-FNSSFGVLNMGSILIIALMLSMGFFGYLKYGEN-VK----G---SIT  167 (471)
Q Consensus        97 ~~~~~~~g~~~faf~~~~~~~~i~~~m~~p~~-~~~~~~v~~~s~~~~~~~Y~~~g~~gY~~fG~~-~~----~---~il  167 (471)
                      .++..++....|+|.|-.......+|+|||+| .+|   ++..+...+.++|....+.--..-..+ .+    +   ...
T Consensus       181 ~~~~~a~~~~~faf~G~e~~~~~a~E~knP~r~iPr---ai~~~~~~i~i~Yil~~~~~~~~~p~~~~~~~~~~~~~~~~  257 (446)
T PRK10197        181 GAVLSAMLITMFSFMGAEIVTIAAAESDTPEKHIVR---ATNSVIWRISIFYLCSIFVVVALIPWNMPGLKAVGSYRSVL  257 (446)
T ss_pred             HHHHHHHHHHHHHHhCHHHHHHHHHHhcChhhhHHH---HHHHHHHHHHHHHHHHHHHHheecCcCcccccccCcHHHHH
Confidence            35667778899999999999999999999965 777   777788888888887655422221111 11    0   011


Q ss_pred             eecCCCCCChHHHHHHHHHHHHHHHhhccccchhHHHHHHHHh--------hhcCCCChhhHHHHHHHHHHHHHHHHHHH
Q psy14360        168 LNLSDRKDDPLALVVVGSIGFGILCTYSLQFYVPVAIIWAELE--------EKYGPFKHPAFGETILRVSLVLLTCKLAL  239 (471)
Q Consensus       168 ~nl~~~~~~~~~~v~~~~~~l~l~~s~pl~~~p~~~~~~~~~~--------~~~~~~~~~~~~~~~~r~~~~~~~~~iA~  239 (471)
                      +....   .....+......++.+.+.--..+...+.++..-+        .+.++++.+ ..-..+...+..+..+...
T Consensus       258 ~~~g~---~~~~~ii~~~i~~~~~~~~n~~~~~~sR~l~a~ardg~lP~~~~~~~~~~~P-~~Ail~~~~~~~l~~l~~~  333 (446)
T PRK10197        258 ELLNI---PHAKLIMDCVILLSVTSCLNSALYTASRMLYSLSRRGDAPAVMGKINRSKTP-YVAVLLSTGAAFLTVVVNY  333 (446)
T ss_pred             HHcCc---hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcCHHHHhhCcCCCc-HHHHHHHHHHHHHHHHHHh
Confidence            12221   23445555555666555555445555555554322        122222222 2222222222222222222


Q ss_pred             hhcc--h-hhhh-hhhhhhhHhhhhhHHHHhhhc
Q psy14360        240 VVVG--S-IGFG-ILCTYSLQFYVPVAIIWAELE  269 (471)
Q Consensus       240 ~ip~--~-slvG-s~~~~~l~fi~P~l~~l~~~~  269 (471)
                      ..|+  + .++. +.....+.+.++.+-++++++
T Consensus       334 ~~~~~~~~~l~~~~~~~~li~y~~~~~a~i~lr~  367 (446)
T PRK10197        334 YAPAKVFKFLIDSSGAIALLVYLVIAVSQLRMRK  367 (446)
T ss_pred             cChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            2232  3 3332 223344788888888888873

>PF13520 AA_permease_2: Amino acid permease; PDB: 3NCY_A 3GI8_C 3GIA_A 3GI9_C 3OB6_A 3L1L_A 3LRC_D 3LRB_B 4DJK_A 4DJI_A

Probab=96.52  E-value=0.015  Score=59.71  Aligned_cols=111  Identities=14%  Similarity=0.162  Sum_probs=75.7

Q ss_pred             ccchhHHHHHHHHhhccceeeecchhhcccccCCCcccchhhhHHHHHHHHHHHHhhhhhhcccCccc---cce---eee
Q psy14360         96 IQQIPLFFGTVIFAFEGIALVLPLQREMKKKKNFNSSFGVLNMGSILIIALMLSMGFFGYLKYGENVK---GSI---TLN  169 (471)
Q Consensus        96 ~~~~~~~~g~~~faf~~~~~~~~i~~~m~~p~~~~~~~~v~~~s~~~~~~~Y~~~g~~gY~~fG~~~~---~~i---l~n  169 (471)
                      +++....++...|+|.|-.......+|+|| |+.+|   .+..+..++.++|......-....+++..   ++.   ...
T Consensus       187 ~~~~~~~~~~~~~~~~G~e~~~~~~~E~k~-k~ip~---ai~~~~~~~~i~y~l~~~~~~~~~~~~~~~~~~~~~~~~~~  262 (426)
T PF13520_consen  187 WPGFLAGFSVAFFAFSGFEAIASLAEENKN-KTIPR---AIIISIIIVAIIYILFSIALLGALPDDELANSSNSPSPFAV  262 (426)
T ss_dssp             SSHHHHHHHHHGGGGTTTTHHHHGGGGSSS-HHHHH---HHHHHHHHHHHHHHHHHHHHHTTSTHCHHHTTTCHHCHHHH
T ss_pred             ccchhhHHHHHHhhcccccccccccccccc-hhhee---ecccchhHHHHHHhhhhheeeecccchhhhcccccccccch
Confidence            345667888899999999999999999998 77888   89999999999999987766555544211   121   001


Q ss_pred             cCCC-CCChHHHHHHHHHHHHHHHhhccccchhHHHHHHHHh
Q psy14360        170 LSDR-KDDPLALVVVGSIGFGILCTYSLQFYVPVAIIWAELE  210 (471)
Q Consensus       170 l~~~-~~~~~~~v~~~~~~l~l~~s~pl~~~p~~~~~~~~~~  210 (471)
                      +-+. .+++...+..+...++.+.+..-......+.++..-+
T Consensus       263 ~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~sR~l~~~a~  304 (426)
T PF13520_consen  263 LASAVGGSWLAIIVSIAAILSLFGSINAFIFGASRLLYAMAR  304 (426)
T ss_dssp             HHHHHHCCTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             hhccccccccccccccccccccccccchhhcchhhccccccc
Confidence            1000 0235566666777777777766666666666665543

...

>PRK10249 phenylalanine transporter; Provisional

Probab=96.51  E-value=0.041  Score=57.30  Aligned_cols=169  Identities=11%  Similarity=0.113  Sum_probs=88.8

Q ss_pred             ccchhHHHHHHHHhhccceeeecchhhcccccC-CCcccchhhhHHHHHHHHHHHHhhhhhhcccCcc----ccceeeec
Q psy14360         96 IQQIPLFFGTVIFAFEGIALVLPLQREMKKKKN-FNSSFGVLNMGSILIIALMLSMGFFGYLKYGENV----KGSITLNL  170 (471)
Q Consensus        96 ~~~~~~~~g~~~faf~~~~~~~~i~~~m~~p~~-~~~~~~v~~~s~~~~~~~Y~~~g~~gY~~fG~~~----~~~il~nl  170 (471)
                      +.++...+....|+|.|-.......+|+|||+| .+|   ++..+.....++|......-....+++.    +++...-+
T Consensus       208 ~~~~~~~~~~~~~af~G~e~~~~~a~E~~~P~k~iPr---ai~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~p~~~~~  284 (458)
T PRK10249        208 WNGLILSLAVIMFSFGGLELIGITAAEARDPEKSIPK---AVNQVVYRILLFYIGSLVVLLALYPWVEVKSNSSPFVMIF  284 (458)
T ss_pred             HHHHHHHHHHHHHHHcCHHHHHHHHHHhcCHhhHHHH---HHHHHHHHHHHHHHHHHHHHheeccccccCccCCcHHHHH
Confidence            345567788899999999999999999999965 777   8888888888888775443332222211    01111000


Q ss_pred             CCCCCChHHHHHHHHHHHHHHHhhccccchhHHHHHHHHh--------hhcCCCChhhHHHHHHHHHHHHHHHHHHHhhc
Q psy14360        171 SDRKDDPLALVVVGSIGFGILCTYSLQFYVPVAIIWAELE--------EKYGPFKHPAFGETILRVSLVLLTCKLALVVV  242 (471)
Q Consensus       171 ~~~~~~~~~~v~~~~~~l~l~~s~pl~~~p~~~~~~~~~~--------~~~~~~~~~~~~~~~~r~~~~~~~~~iA~~ip  242 (471)
                      .+...+....+......++.+.+.--..+...+.++..-+        .+.++++.+ .....+...+..+..++....|
T Consensus       285 ~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~sR~l~a~ardg~lP~~~~kv~~~~~P-~~All~~~~i~~l~~l~~~~~~  363 (458)
T PRK10249        285 HNLDSNVVASALNFVILVASLSVYNSGVYSNSRMLFGLSVQGNAPKFLTRVSRRGVP-INSLMLSGAITSLVVLINYLLP  363 (458)
T ss_pred             HHcCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcCHHHHHhCCCCCC-HHHHHHHHHHHHHHHHHHHhCh
Confidence            0000123333444444444444433223334444443211        122222222 2223333333333333333334


Q ss_pred             c--h-hhhhhh-hhhhhHhhhhhHHHHhhh
Q psy14360        243 G--S-IGFGIL-CTYSLQFYVPVAIIWAEL  268 (471)
Q Consensus       243 ~--~-slvGs~-~~~~l~fi~P~l~~l~~~  268 (471)
                      .  + .+++.. ....+.+++|++.+++.+
T Consensus       364 ~~~f~~l~~~~~~~~~i~y~~~~~~~l~~r  393 (458)
T PRK10249        364 QKAFGLLMALVVATLLLNWIMICLAHLRFR  393 (458)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3  2 333322 256788999999999987

>TIGR01773 GABAperm gamma-aminobutyrate permease

Probab=96.44  E-value=0.19  Score=52.13  Aligned_cols=53  Identities=21%  Similarity=0.202  Sum_probs=42.9

Q ss_pred             chhHHHHHHHHhhccceeeecchhhccccc-CCCcccchhhhHHHHHHHHHHHHhhh
Q psy14360         98 QIPLFFGTVIFAFEGIALVLPLQREMKKKK-NFNSSFGVLNMGSILIIALMLSMGFF  153 (471)
Q Consensus        98 ~~~~~~g~~~faf~~~~~~~~i~~~m~~p~-~~~~~~~v~~~s~~~~~~~Y~~~g~~  153 (471)
                      ++..++....|+|.|-.......+|+|||+ +.+|   ++..+......+|+.....
T Consensus       202 ~~~~a~~~~~~af~G~e~~~~~a~E~k~P~r~iPr---Ai~~~~~~~~~~y~l~~~~  255 (452)
T TIGR01773       202 AVLLAILVTMFSFMGTEIVTIAAAESSNPIKSITR---ATNSVIWRIIVFYLGSIFI  255 (452)
T ss_pred             HHHHHHHHHHHHhccHHHHhHHHHhhcChhhHHHH---HHHHHHHHHHHHHHHHHHH
Confidence            466677889999999999999999999996 5777   7766777777888876443

GabP is highly homologous to amino acid permeases from B. subtilis, E. coli, as well as to other members of the amino acid permease family (pfam00324). A member of the APC (amine-polyamine-choline) transporter superfamily, GABA permease possesses a "consensus amphiphatic region" (CAR) found to be evolutionarily conserved within this transport family. This amphiphatic region is located between helix 8 and cytoplasmic loop 8-9, forming a potential channel domain and suggested to play a significant role in ligand recognition and translocation. Unique to GABA permeases, a conserved cysteine residue (CYS-300, E.coli) located at the beginning of the amphiphatic domain, has been determined to be critical for catalytic specificity.

>PRK10655 potE putrescine transporter; Provisional

Probab=96.43  E-value=0.045  Score=56.58  Aligned_cols=55  Identities=9%  Similarity=0.071  Sum_probs=45.8

Q ss_pred             chhHHHHHHHHhhccceeeecchhhccccc-CCCcccchhhhHHHHHHHHHHHHhhhhh
Q psy14360         98 QIPLFFGTVIFAFEGIALVLPLQREMKKKK-NFNSSFGVLNMGSILIIALMLSMGFFGY  155 (471)
Q Consensus        98 ~~~~~~g~~~faf~~~~~~~~i~~~m~~p~-~~~~~~~v~~~s~~~~~~~Y~~~g~~gY  155 (471)
                      ++..++....|+|.|-.......+|+|||+ +.+|   ++..+..++.++|........
T Consensus       190 ~~~~~~~~~~~af~G~e~~~~~a~E~k~P~r~iPr---Ai~~~~~~~~~~Y~l~~~~~~  245 (438)
T PRK10655        190 AVGSSIAMTLWAFLGLESACANSDAVENPERNVPI---AVLGGTLGAAVIYIVSTNVIA  245 (438)
T ss_pred             HHHHHHHHHHHHHhhhhhhhhhHHHhhCccccccH---HHHHHHHHHHHHHHHHHHHHH
Confidence            444556678999999999999999999995 6888   899999999999988765443

>TIGR00906 2A0303 cationic amino acid transport permease

Probab=96.38  E-value=0.047  Score=58.27  Aligned_cols=55  Identities=15%  Similarity=0.103  Sum_probs=46.9

Q ss_pred             cchhHHHHHHHHhhccceeeecchhhcccccC-CCcccchhhhHHHHHHHHHHHHhhhh
Q psy14360         97 QQIPLFFGTVIFAFEGIALVLPLQREMKKKKN-FNSSFGVLNMGSILIIALMLSMGFFG  154 (471)
Q Consensus        97 ~~~~~~~g~~~faf~~~~~~~~i~~~m~~p~~-~~~~~~v~~~s~~~~~~~Y~~~g~~g  154 (471)
                      .++........|+|.|-..+....+|+|||+| .++   .+..+..++.++|..+...-
T Consensus       231 ~g~l~g~~~~~faf~Gfd~v~~~aeE~knP~r~iP~---aii~sl~i~~vlY~lv~~~l  286 (557)
T TIGR00906       231 TGVLSGAATCFFAFIGFDAIATTGEEVKNPQRAIPI---GIVTSLLVCFVAYFLMSAAL  286 (557)
T ss_pred             HHHHHHHHHHHHHHhhHHHHHHhHHhccCccccccH---HHHHHHHHHHHHHHHHHHHH
Confidence            35566777889999999999999999999965 788   89999999999999886553

>PRK10238 aromatic amino acid transporter; Provisional

Probab=96.37  E-value=0.1  Score=54.31  Aligned_cols=168  Identities=10%  Similarity=0.109  Sum_probs=83.8

Q ss_pred             chhHHHHHHHHhhccceeeecchhhcccccC-CCcccchhhhHHHHHHHHHHHHhhh--hhhcccCc--cccceeeecCC
Q psy14360         98 QIPLFFGTVIFAFEGIALVLPLQREMKKKKN-FNSSFGVLNMGSILIIALMLSMGFF--GYLKYGEN--VKGSITLNLSD  172 (471)
Q Consensus        98 ~~~~~~g~~~faf~~~~~~~~i~~~m~~p~~-~~~~~~v~~~s~~~~~~~Y~~~g~~--gY~~fG~~--~~~~il~nl~~  172 (471)
                      ++...++...|+|.|-.......+|+|||+| .+|   ++..+.....+.|...-..  +...+.+-  ..++...-+.+
T Consensus       201 ~~~~~~~~~~~af~G~e~~~~~aeE~knP~r~iPr---Ai~~~~~~i~~~y~~~~~~~~~~~p~~~l~~~~sP~~~~~~~  277 (456)
T PRK10238        201 GLVMMMAIIMFSFGGLELVGITAAEADNPEQSIPK---ATNQVIYRILIFYIGSLAVLLSLMPWTRVTADTSPFVLIFHE  277 (456)
T ss_pred             HHHHHHHHHHHHhcCHHHHHHHHHhhcChhhHHHH---HHHHHHHHHHHHHHHHHHHHheecChhccCCCCCcHHHHHHH
Confidence            3445667789999999999999999999964 777   7766666666666554222  11111111  01111110100


Q ss_pred             CCCChHHHHHHHHHHHHHHHhhccccchhHHHHHHHHh--------hhcCCCChhhHHHHHHHHHHHHHHHHHHHhhcc-
Q psy14360        173 RKDDPLALVVVGSIGFGILCTYSLQFYVPVAIIWAELE--------EKYGPFKHPAFGETILRVSLVLLTCKLALVVVG-  243 (471)
Q Consensus       173 ~~~~~~~~v~~~~~~l~l~~s~pl~~~p~~~~~~~~~~--------~~~~~~~~~~~~~~~~r~~~~~~~~~iA~~ip~-  243 (471)
                      ..+.....+......++.+.+.--..+...+.++..=+        .+.++++.+ ..-..+...+..+..++....|+ 
T Consensus       278 ~g~~~~~~i~~~~i~~~~~s~~~~~~~~~sR~l~a~ardg~lP~~f~kv~~~~~P-~~Ail~~~~i~~l~~l~~~~~~~~  356 (456)
T PRK10238        278 LGDTFVANALNIVVLTAALSVYNSCVYCNSRMLFGLAQQGNAPKALASVDKRGVP-VNTILVSALVTALCVLINYLAPES  356 (456)
T ss_pred             cCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCccHHHHhhCcCCCc-HHHHHHHHHHHHHHHHHHhcChHH
Confidence            00123334445555555544443334455555543321        111222222 22222233322222222223343 


Q ss_pred             -h-hhhhh-hhhhhhHhhhhhHHHHhhhc
Q psy14360        244 -S-IGFGI-LCTYSLQFYVPVAIIWAELE  269 (471)
Q Consensus       244 -~-slvGs-~~~~~l~fi~P~l~~l~~~~  269 (471)
                       + .+++. ..+..+.+.+|.+.+++.++
T Consensus       357 ~f~~l~~~~~~~~~i~y~~~~~~~l~~r~  385 (456)
T PRK10238        357 AFGLLMALVVSALVINWAMISLAHMKFRR  385 (456)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence             2 33332 23566889999999999883

>TIGR03813 put_Glu_GABA_T putative glutamate/gamma-aminobutyrate antiporter

Probab=96.36  E-value=0.18  Score=52.64  Aligned_cols=51  Identities=4%  Similarity=0.155  Sum_probs=41.4

Q ss_pred             HHHHhhccceeeecchhhccccc-CCCcccchhhhHHHHHHHHHHHHhhhhhhcc
Q psy14360        105 TVIFAFEGIALVLPLQREMKKKK-NFNSSFGVLNMGSILIIALMLSMGFFGYLKY  158 (471)
Q Consensus       105 ~~~faf~~~~~~~~i~~~m~~p~-~~~~~~~v~~~s~~~~~~~Y~~~g~~gY~~f  158 (471)
                      ...|+|.|-.......+|+|||+ +.+|   ++..+...+.++|....+.-...-
T Consensus       202 ~~~~af~G~e~~~~~a~E~knP~r~iPr---Ai~~~~~~~~~~y~l~~~~~~~~~  253 (474)
T TIGR03813       202 SIFLFYAGMEMNAVHVKDVDNPDKNYPI---AILIAALGTVLIFVLGTLAIAFII  253 (474)
T ss_pred             HHHHHHhchhHhHHHHHhccCcccchhH---HHHHHHHHHHHHHHHHHHHHHhcc
Confidence            45789999999999999999995 5888   899999999999987655543333

Members of this protein family are putative putative glutamate/gamma-aminobutyrate antiporters. Each member of the seed alignment is found adjacent to a glutamate decarboxylase, which converts glutamate (Glu) to gamma-aminobutyrate (GABA). However, the majority belong to genome contexts with a glutaminase (converts Gln to Glu) as well as the decarboxylase that converts Glu to GABA. The specificity of the transporter remains uncertain.

>PRK10435 cadB lysine/cadaverine antiporter; Provisional

Probab=96.28  E-value=0.037  Score=57.17  Aligned_cols=60  Identities=13%  Similarity=0.022  Sum_probs=50.0

Q ss_pred             ccchhHHHHHHHHhhccceeeecchhhccccc-CCCcccchhhhHHHHHHHHHHHHhhhhhhcc
Q psy14360         96 IQQIPLFFGTVIFAFEGIALVLPLQREMKKKK-NFNSSFGVLNMGSILIIALMLSMGFFGYLKY  158 (471)
Q Consensus        96 ~~~~~~~~g~~~faf~~~~~~~~i~~~m~~p~-~~~~~~~v~~~s~~~~~~~Y~~~g~~gY~~f  158 (471)
                      ..++..++....|+|.|-.......+|+|||+ +.+|   ++..+...+.++|+..........
T Consensus       186 ~~~~~~a~~~~~faf~G~E~~~~~a~E~knP~r~iPr---Ai~~~~~iv~ilYil~~~~~~~~~  246 (435)
T PRK10435        186 GHAIIKSILLCLWAFVGVESAAVSTGMVKNPKRTVPL---ATMLGTGLAGIIYIAATQVISGMF  246 (435)
T ss_pred             HHHHHHHHHHHHHHHhhHHHHHHHHHHhhCccccccH---HHHHHHHHHHHHHHHHHHHHHhcC
Confidence            34566677889999999999999999999994 6888   899999999999998877654333

>TIGR03810 arg_ornith_anti arginine/ornithine antiporter

Probab=96.25  E-value=0.086  Score=55.03  Aligned_cols=163  Identities=13%  Similarity=0.098  Sum_probs=90.0

Q ss_pred             chhHHHHHHHHhhccceeeecchhhcccccCCCcccchhhhHHHHHHHHHHHHhhhhhhcccCc-c---ccc----eeee
Q psy14360         98 QIPLFFGTVIFAFEGIALVLPLQREMKKKKNFNSSFGVLNMGSILIIALMLSMGFFGYLKYGEN-V---KGS----ITLN  169 (471)
Q Consensus        98 ~~~~~~g~~~faf~~~~~~~~i~~~m~~p~~~~~~~~v~~~s~~~~~~~Y~~~g~~gY~~fG~~-~---~~~----il~n  169 (471)
                      ++..++....|+|.|-.......+|.||||+.+|   .+..+...+..+|..+....+...+++ .   +++    +..+
T Consensus       196 ~~~~~~~~~~~~f~G~e~~~~~a~e~k~~k~ip~---ai~~~~~~v~~lY~l~~~~~~g~~~~~~l~~~~~p~~~~~~~~  272 (468)
T TIGR03810       196 QVKNMMLVTVWVFIGIEGASMLSARAEKRSDVGK---ATVIGLIGVLAIYVLVSVLSYGIMTQAQLAGLKNPSMAYVLEH  272 (468)
T ss_pred             HHHHHHHHHHHHHHhHhHHhhhHhhccCcccchH---HHHHHHHHHHHHHHHHHHHHHhCcCHHHHhcCCCchHHHHHHH
Confidence            3445667789999999998899999999888888   899999999999998877655444321 1   111    1111


Q ss_pred             cCCCCCChHHHHHHHHHHHHHHHhhccccchhHHHHHHHH--------hhhcCCCChhhHHHHHHHHHHHHHHHHHHHhh
Q psy14360        170 LSDRKDDPLALVVVGSIGFGILCTYSLQFYVPVAIIWAEL--------EEKYGPFKHPAFGETILRVSLVLLTCKLALVV  241 (471)
Q Consensus       170 l~~~~~~~~~~v~~~~~~l~l~~s~pl~~~p~~~~~~~~~--------~~~~~~~~~~~~~~~~~r~~~~~~~~~iA~~i  241 (471)
                      .-   ..+...+..+...++.+.+.--......+..+..=        +.+.++++.+ ..-..+...+..+..++. ..
T Consensus       273 ~~---g~~~~~~i~~~~~is~~~~~~~~~~~~sR~~~a~ardg~lP~~f~k~~~~~tP-~~al~~~~~i~~~~~l~~-~~  347 (468)
T TIGR03810       273 MV---GTWGAVLINIGLIISILGAWLSWTLLPAEIPLLMAKDKLMPKYFGKENANGAP-TNALWLTNGLIQIFLLTT-LF  347 (468)
T ss_pred             Hc---chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCccHHHHhhCCCCCC-HHHHHHHHHHHHHHHHHH-Hc
Confidence            11   12344555556666665554444444444443321        1122222222 212222222222111111 12


Q ss_pred             cc--h-hhhh-hhhhhhhHhhhhhHHHHhhh
Q psy14360        242 VG--S-IGFG-ILCTYSLQFYVPVAIIWAEL  268 (471)
Q Consensus       242 p~--~-slvG-s~~~~~l~fi~P~l~~l~~~  268 (471)
                      ++  + .++. +.....+.|.++++.++|++
T Consensus       348 ~~~~~~~l~~~~~~~~li~y~~~~~~~~~l~  378 (468)
T TIGR03810       348 SEQAYNFAISLATSAILVPYLWSAAYQVKLS  378 (468)
T ss_pred             cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            22  3 2322 22345678889999888887

Members of this protein family are the arginine/ornithine antiporter, ArcD. This exchanger of ornithine for arginine occurs in a system with arginine deiminase, ornithine carbamoyltransferase, and carbamate kinase, with together turn arginine to ornithine with the generation of ATP and release of CO2.

>KOG1287|consensus

Probab=96.18  E-value=0.12  Score=53.01  Aligned_cols=163  Identities=12%  Similarity=0.084  Sum_probs=97.9

Q ss_pred             cccchhHHHHHHHHhhccceeeecchhhccccc-CCCcccchhhhHHHHHHHHHHHHhhhhhhcccCccccceeee----
Q psy14360         95 HIQQIPLFFGTVIFAFEGIALVLPLQREMKKKK-NFNSSFGVLNMGSILIIALMLSMGFFGYLKYGENVKGSITLN----  169 (471)
Q Consensus        95 ~~~~~~~~~g~~~faf~~~~~~~~i~~~m~~p~-~~~~~~~v~~~s~~~~~~~Y~~~g~~gY~~fG~~~~~~il~n----  169 (471)
                      +..++..++-.-.|+|.|=..+=.+.+|+|||+ ..++   +...++.++++.|+.+=+..+.+--   .+.++.+    
T Consensus       202 ~~g~i~lafysglfa~~GWd~lN~vteEiknP~ktLP~---Ai~isi~lvt~iYil~NvAy~~vls---~~e~l~S~aVa  275 (479)
T KOG1287|consen  202 DVGNIALAFYSGLFAFSGWDYLNYVTEEIKNPRRTLPR---AILISIPLVTVIYVLVNVAYFTVLS---PDEILSSDAVA  275 (479)
T ss_pred             chHHHHHHHHHhhhcccCchhhccchHhhcCccccchH---HHHHhhHHHHHHHHHhHhheeEecC---HHHhcccchHH
Confidence            344577788888899999999889999999995 5777   9999999999999999776554432   1222111    


Q ss_pred             --cCCCCCChHHHHHHHHHHHHHHHhhccccchhHHHHHHHHhhh---------cCCCChhhHHHHHHHHHHHHHHHHHH
Q psy14360        170 --LSDRKDDPLALVVVGSIGFGILCTYSLQFYVPVAIIWAELEEK---------YGPFKHPAFGETILRVSLVLLTCKLA  238 (471)
Q Consensus       170 --l~~~~~~~~~~v~~~~~~l~l~~s~pl~~~p~~~~~~~~~~~~---------~~~~~~~~~~~~~~r~~~~~~~~~iA  238 (471)
                        +.+..-+.+..++.++.+++.+.+.=-.++...+.++..-++.         +.++..+ +    ..+.+.....++.
T Consensus       276 v~Fa~~~~G~~~~~ip~~ValS~~G~~n~~ifs~SR~~~~~areG~LP~~~s~i~~~~~TP-~----~allf~~~~~i~~  350 (479)
T KOG1287|consen  276 VTFADRILGVFAWAIPFSVALSLIGSLNSVIFSSSRLFYAGAREGHLPAFFSMISVRRFTP-R----PALLFSGLLSIVL  350 (479)
T ss_pred             HHHHHHhccchHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHccCccHHHHhhcCCCCCC-h----HHHHHHHHHHHHH
Confidence              1110011223556666666666665545555555554433221         1111111 1    2333444445555


Q ss_pred             Hhhcch----hhhhhhhhhhhHhhhhhHHHHhhh
Q psy14360        239 LVVVGS----IGFGILCTYSLQFYVPVAIIWAEL  268 (471)
Q Consensus       239 ~~ip~~----slvGs~~~~~l~fi~P~l~~l~~~  268 (471)
                      ..+.|+    +.++=.-.....+.+=+++++|.+
T Consensus       351 ~~~~d~~~LIny~sf~~~l~~~l~~~gll~lR~k  384 (479)
T KOG1287|consen  351 SLIGDFDQLINYVSFAYWLFRGLSMAGLLWLRWK  384 (479)
T ss_pred             HHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence            556665    444444555566677788888887

>PRK10746 putative transport protein YifK; Provisional

Probab=96.06  E-value=0.17  Score=52.72  Aligned_cols=170  Identities=11%  Similarity=0.069  Sum_probs=89.8

Q ss_pred             ccchhHHHHHHHHhhccceeeecchhhccccc-CCCcccchhhhHHHHHHHHHHHHhhhhhhcccCcc-c---cceeeec
Q psy14360         96 IQQIPLFFGTVIFAFEGIALVLPLQREMKKKK-NFNSSFGVLNMGSILIIALMLSMGFFGYLKYGENV-K---GSITLNL  170 (471)
Q Consensus        96 ~~~~~~~~g~~~faf~~~~~~~~i~~~m~~p~-~~~~~~~v~~~s~~~~~~~Y~~~g~~gY~~fG~~~-~---~~il~nl  170 (471)
                      +.++..++....|+|.|-..+....+|+|||+ +.+|   +...+.....++|.......-.....+. .   ++...-+
T Consensus       199 ~~g~~~~~~~~~faf~G~e~v~~~a~E~knP~k~iP~---Ai~~~~~~i~~~yv~~~~~~~~~~p~~~~~~~~sp~v~~~  275 (461)
T PRK10746        199 WKGFLTALCIVVASYQGVELIGITAGEAKNPQVTLRS---AVGKVLWRILIFYVGAIFVIVTIFPWNEIGSNGSPFVLTF  275 (461)
T ss_pred             HHHHHHHHHHHHHHhcCHHHHHHHHHHhcChhhHHHH---HHHHHHHHHHHHHHHHHHHHeeeeCCCCCCCCCCcHHHHH
Confidence            34566788889999999999999999999995 5777   7777777777788775444333332211 1   1111000


Q ss_pred             CCCCCChHHHHHHHHHHHHHHHhhccccchhHHHHHHHHh--------hhcCCCChhhHHHHHHHHHHHHHHHHHHHhhc
Q psy14360        171 SDRKDDPLALVVVGSIGFGILCTYSLQFYVPVAIIWAELE--------EKYGPFKHPAFGETILRVSLVLLTCKLALVVV  242 (471)
Q Consensus       171 ~~~~~~~~~~v~~~~~~l~l~~s~pl~~~p~~~~~~~~~~--------~~~~~~~~~~~~~~~~r~~~~~~~~~iA~~ip  242 (471)
                      .+........+.+....++.+.+.--.++...+.++..-+        .+.++++.+ .....+......+...+....|
T Consensus       276 ~~~g~~~~~~i~~~~il~a~~s~~n~~~~~~sR~l~~~a~~g~lP~~~~~~~~~g~P-~~al~~~~~~~~l~~~~~~~~~  354 (461)
T PRK10746        276 AKIGITAAAGIINFVVLTAALSGCNSGMYSCGRMLYALAKNRQLPAAMAKVSRHGVP-VAGVAVSILILLVGSCLNYIIP  354 (461)
T ss_pred             HHhCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcCHHHHHhCCCCCc-HHHHHHHHHHHHHHHHHHHhcc
Confidence            0000112334455555555555544444555555554322        122222222 2222222222222223333444


Q ss_pred             ch----hhhhhh--hhhhhHhhhhhHHHHhhhc
Q psy14360        243 GS----IGFGIL--CTYSLQFYVPVAIIWAELE  269 (471)
Q Consensus       243 ~~----slvGs~--~~~~l~fi~P~l~~l~~~~  269 (471)
                      +-    +.+-++  .+..+.++++.+-++|.++
T Consensus       355 ~~~~~f~~l~~~~~~~~~i~w~~i~~~~i~~r~  387 (461)
T PRK10746        355 NPQRVFVYVYSASVLPGMVPWFVILISQLRFRR  387 (461)
T ss_pred             CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            32    222222  2356788888888999873

>TIGR00837 araaP aromatic amino acid transport protein

Probab=96.02  E-value=0.0048  Score=62.55  Aligned_cols=121  Identities=11%  Similarity=-0.014  Sum_probs=71.9

Q ss_pred             HHHHHHHHHHHHhhcccCCcchhHHHHHHHHHHHHhhheEEEEeccCCCCCccCc---ccccccchhhhhhhHhhhcccc
Q psy14360        325 YHMAIMLAPILFTAMIRNLKYIAPISAVANLIMGLGIAAIYYYILQDLPPVSTRN---YVGHIQQIPLFFGTVIFAFEGI  401 (471)
Q Consensus       325 ~~~~i~~~~~~pl~~~~~l~~ls~~S~~~~~~~~~~~~ii~~~~~~~~~~~~~~~---~~~~~~~~~~~~g~~~faf~~~  401 (471)
                      .+..++.+.+.++. .+..|..+.++.+.....+..++........+.......+   ....+.++..+++...++|+.|
T Consensus       116 ~~~~~~~~v~~~l~-~~G~~~~~~v~~i~~~~~l~~l~~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~fg~~  194 (381)
T TIGR00837       116 AIVLIFTVLFGSFV-WLSTSAVDRITRVLIFGKIIAFALVFSGLLPHVKGDLLLDVALDTSYWPYILSALPVCLTSFGFH  194 (381)
T ss_pred             HHHHHHHHHHHHHH-HhchhHHHHHHHHHHHHHHHHHHHHHHHHHhhccHHHHhcCccccccHHHHHHHHHHHHHHHHcc
Confidence            33333333343443 3445677777766655544333222111111111000001   0124556678888999999999


Q ss_pred             ccchhhHHhhhc-CCCCCcccchhhhHHHHHHHHHHHHHhhhhhhccCc
Q psy14360        402 ALVLPLQREMKK-KKNFNSSFGVLNMGSILIIALMLSMGFFGYLKYGEN  449 (471)
Q Consensus       402 ~~~~~i~~~M~~-p~~f~~~~~vl~~~~~~~~~~y~~~g~~gY~~fG~~  449 (471)
                      .+++++.++++| +|+.+|   +...+..+++++|+.+........+.+
T Consensus       195 ~~i~~~~~~~~~~~k~i~r---aii~g~~i~~~lY~l~~~~~~g~~~~~  240 (381)
T TIGR00837       195 GNVPSLYKYYDGNVKKVKK---SILIGSAIALVLYILWQLATMGNLPRS  240 (381)
T ss_pred             cccHHHHHHhccCHHHHHH---HHHHHHHHHHHHHHHHHHHHhCCCCHH
Confidence            999999999974 456666   788999999999998876666555543

aromatic amino acid transporters and includes the tyrosine permease, TyrP, of E. coli, and the tryptophan transporters TnaB and Mtr of E. coli.

>TIGR00908 2A0305 ethanolamine permease

Probab=95.91  E-value=0.082  Score=54.70  Aligned_cols=52  Identities=17%  Similarity=0.096  Sum_probs=42.0

Q ss_pred             chhHHHHHHHHhhccceeeecchhhccccc-CCCcccchhhhHHHHHHHHHHHHhh
Q psy14360         98 QIPLFFGTVIFAFEGIALVLPLQREMKKKK-NFNSSFGVLNMGSILIIALMLSMGF  152 (471)
Q Consensus        98 ~~~~~~g~~~faf~~~~~~~~i~~~m~~p~-~~~~~~~v~~~s~~~~~~~Y~~~g~  152 (471)
                      ++..++....|+|.|.......-+|+|||+ +.+|   ++..+..++..+|...-.
T Consensus       192 ~~~~~~~~~~~af~G~e~~~~~aeE~k~P~r~ipr---ai~~s~~~~~~~~~~~~~  244 (442)
T TIGR00908       192 GVFAAIPFAIWFFLAVEGVAMAAEETKNPKRDIPR---GLIGAILTLLALAAGILV  244 (442)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhcCcccccCH---HHHHHHHHHHHHHHHHHH
Confidence            345566667899999999999999999995 5788   888888888888876644

The three genes used as the seed for this model (from Burkholderia pseudomallei, Pseudomonas aeruginosa and Clostridium acetobutylicum are all adjacent to genes for the catabolism of ethanolamine. Most if not all of the hits to this model have a similar arrangement of genes. This group is a member of the Amino Acid-Polyamine-Organocation (APC) Superfamily.

>PRK10644 arginine:agmatin antiporter; Provisional

Probab=95.91  E-value=0.075  Score=55.07  Aligned_cols=55  Identities=13%  Similarity=0.077  Sum_probs=45.9

Q ss_pred             chhHHHHHHHHhhccceeeecchhhccccc-CCCcccchhhhHHHHHHHHHHHHhhhhh
Q psy14360         98 QIPLFFGTVIFAFEGIALVLPLQREMKKKK-NFNSSFGVLNMGSILIIALMLSMGFFGY  155 (471)
Q Consensus        98 ~~~~~~g~~~faf~~~~~~~~i~~~m~~p~-~~~~~~~v~~~s~~~~~~~Y~~~g~~gY  155 (471)
                      ++...+....|+|.|-.......+|+|||+ +.+|   ++..+..++.++|....+.--
T Consensus       192 ~~~~~~~~~~~af~G~e~~~~~aeE~k~P~r~iPr---ai~~s~~i~~v~Y~l~~~~~~  247 (445)
T PRK10644        192 AIQSTLNVTLWSFIGVESASVAAGVVKNPKRNVPI---ATIGGVLIAAVCYVLSSTAIM  247 (445)
T ss_pred             HHHHHHHHHHHHHHhHHHHHHHHHHhhCcccchhH---HHHHHHHHHHHHHHHHHHHHH
Confidence            344456678999999999999999999995 5788   899999999999998876633

>PRK15049 L-asparagine permease; Provisional

Probab=95.88  E-value=0.42  Score=50.33  Aligned_cols=163  Identities=12%  Similarity=0.045  Sum_probs=85.8

Q ss_pred             HHHHHHHhhccceeeecchhhcccccC-CCcccchhhhHHHHHHHHHHHHhhhhhhcccC-ccc---cceeeecCCCCCC
Q psy14360        102 FFGTVIFAFEGIALVLPLQREMKKKKN-FNSSFGVLNMGSILIIALMLSMGFFGYLKYGE-NVK---GSITLNLSDRKDD  176 (471)
Q Consensus       102 ~~g~~~faf~~~~~~~~i~~~m~~p~~-~~~~~~v~~~s~~~~~~~Y~~~g~~gY~~fG~-~~~---~~il~nl~~~~~~  176 (471)
                      .+....|+|.|-..+....+|+|||+| .+|   ++..++..+.++|+..........+. +.+   ++...-+.+....
T Consensus       225 ~~~~~~faf~G~e~i~~~aeE~knP~r~iPr---Ai~~~~~~i~~~yi~~~~~~~~~~p~~~~~~~~sP~~~~~~~~g~~  301 (499)
T PRK15049        225 LIQGVVFAFASIEMVGTAAGECKDPQTMVPK---AINSVIWRIGLFYVGSVVLLVMLLPWSAYQAGQSPFVTFFSKLGVP  301 (499)
T ss_pred             HHHHHHHHHhhHHHHHHHHHHhcChhhHHHH---HHHHHHHHHHHHHHHHHHHHheecchhccCcCCCHHHHHHHHcCch
Confidence            345688999999999999999999965 777   78877788888888765543333321 111   1111101000012


Q ss_pred             hHHHHHHHHHHHHHHHhhccccchhHHHHHHHHh--------hhcCCCChhhHHHHHHHHHHHHHHHHHHHhhcc--h-h
Q psy14360        177 PLALVVVGSIGFGILCTYSLQFYVPVAIIWAELE--------EKYGPFKHPAFGETILRVSLVLLTCKLALVVVG--S-I  245 (471)
Q Consensus       177 ~~~~v~~~~~~l~l~~s~pl~~~p~~~~~~~~~~--------~~~~~~~~~~~~~~~~r~~~~~~~~~iA~~ip~--~-s  245 (471)
                      +...+..+...++.+.+.--..+...+.++..-+        .+.++++.+ ..-..+..++..+..++....|.  + .
T Consensus       302 ~~~~ii~~~ilia~~ss~ns~~~~~sR~l~a~Ardg~lP~~f~kv~k~~~P-~~Ail~~~~i~~l~~~l~~~~~~~~f~~  380 (499)
T PRK15049        302 YIGSIMNIVVLTAALSSLNSGLYCTGRILRSMAMGGSAPSFMAKMSRQHVP-YAGILATLVVYVVGVFLNYLVPSRVFEI  380 (499)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcCHHHHHhCCCCCC-HHHHHHHHHHHHHHHHHHhcChHHHHHH
Confidence            2334555555555555544444445555544322        111222222 22222333322222223333343  2 2


Q ss_pred             hhh-hhhhhhhHhhhhhHHHHhhh
Q psy14360        246 GFG-ILCTYSLQFYVPVAIIWAEL  268 (471)
Q Consensus       246 lvG-s~~~~~l~fi~P~l~~l~~~  268 (471)
                      +++ +..+..+.+.+|.+.+++++
T Consensus       381 l~~~~~~~~li~y~~~~~~~l~~R  404 (499)
T PRK15049        381 VLNFASLGIIASWAFIIVCQMRLR  404 (499)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHH
Confidence            222 33456778999999999887

>PRK11049 D-alanine/D-serine/glycine permease; Provisional

Probab=95.80  E-value=0.17  Score=52.83  Aligned_cols=55  Identities=25%  Similarity=0.219  Sum_probs=42.9

Q ss_pred             chhHHHHHHHHhhccceeeecchhhcccccC-CCcccchhhhHHHHHHHHHHHHhhhhh
Q psy14360         98 QIPLFFGTVIFAFEGIALVLPLQREMKKKKN-FNSSFGVLNMGSILIIALMLSMGFFGY  155 (471)
Q Consensus        98 ~~~~~~g~~~faf~~~~~~~~i~~~m~~p~~-~~~~~~v~~~s~~~~~~~Y~~~g~~gY  155 (471)
                      ++..++....|+|.|-.......+|+|||+| .+|   ++..+.....+.|......-+
T Consensus       212 ~~~~~~~~~~~af~G~e~~~~~a~E~knP~r~iPr---ai~~~~~~~~~~y~l~~~~~~  267 (469)
T PRK11049        212 GFFAGFQIAVFAFVGIELVGTTAAETKDPEKSLPR---AINSIPIRIIMFYVFALIVIM  267 (469)
T ss_pred             HHHHHHHHHHHHHhcHHHHHHHHHHhcCHhhHHHH---HHHHHHHHHHHHHHHHHHHHe
Confidence            4667778899999999999999999999965 677   776666666777776655443

>TIGR00905 2A0302 transporter, basic amino acid/polyamine antiporter (APA) family

Probab=95.62  E-value=0.33  Score=50.76  Aligned_cols=56  Identities=13%  Similarity=0.204  Sum_probs=46.3

Q ss_pred             chhHHHHHHHHhhccceeeecchhhcccccCCCcccchhhhHHHHHHHHHHHHhhhhhh
Q psy14360         98 QIPLFFGTVIFAFEGIALVLPLQREMKKKKNFNSSFGVLNMGSILIIALMLSMGFFGYL  156 (471)
Q Consensus        98 ~~~~~~g~~~faf~~~~~~~~i~~~m~~p~~~~~~~~v~~~s~~~~~~~Y~~~g~~gY~  156 (471)
                      ++........|+|.|-.......+|+||+|+.+|   .+..+..++.++|.........
T Consensus       200 ~~~~~~~~~~~af~G~e~~~~~a~E~k~~r~iPr---ai~~~~~i~~~~Yil~~~~~~~  255 (473)
T TIGR00905       200 QVKNTMLVTLWVFIGIEGAVVSSGRAKNKSDVGK---ATVLGTLGALVIYILITLLSLG  255 (473)
T ss_pred             HHHHHHHHHHHHHHhHHHHHHHHHHHhccccchH---HHHHHHHHHHHHHHHHHHHHHh
Confidence            4455667789999999999999999999667888   8999999999999988665433

This family includes several families of antiporters that, rather commonly, are encoded next to decarboxylases that convert one of the antiporter substrates into the other. This arrangement allows a cycle that can remove proteins from the cytoplasm and thereby protect against acidic conditions.

>TIGR03428 ureacarb_perm permease, urea carboxylase system

Probab=95.45  E-value=0.27  Score=51.46  Aligned_cols=49  Identities=10%  Similarity=-0.157  Sum_probs=37.2

Q ss_pred             HHHHHHHhhccceeeecchhhccccc-CCCcccchhhhHHHHHHHHHHHHhhh
Q psy14360        102 FFGTVIFAFEGIALVLPLQREMKKKK-NFNSSFGVLNMGSILIIALMLSMGFF  153 (471)
Q Consensus       102 ~~g~~~faf~~~~~~~~i~~~m~~p~-~~~~~~~v~~~s~~~~~~~Y~~~g~~  153 (471)
                      ..-...|+|.|-.......+|+|||+ +.+|   .+..+..+...+|...-+.
T Consensus       218 ~~~~~~~~f~G~e~~~~~aeE~knP~r~iPr---ai~~s~~i~~~~~~~~~~~  267 (475)
T TIGR03428       218 SGLMAAYVMVGFGSAGELSEETKNPRRVAPR---TILTALSVSALGGGLMILG  267 (475)
T ss_pred             HHHHHHHHhcCcchHHHHHHHhcCcchhhhH---HHHHHHHHHHHHHHHHHHH
Confidence            33456799999999999999999995 4777   7888887776655554443

A number of bacteria obtain nitrogen by biotin- and ATP-dependent urea degradation system distinct from urease. The two characterized proteins of this system are the enzymes urea carboxylase and allophanate hydrolase, but other, uncharacterized proteins co-occur as genes encoded nearby in multiple organisms. This family includes predicted permeases of the amino acid permease family, likely to transport either urea or a compound from which urea is derived. It is found so far only Actinobacteria, whereas a number of other species with the urea carboxylase have an adjacent ABC transporter operon.

>TIGR00910 2A0307_GadC glutamate:gamma-aminobutyrate antiporter

Probab=95.45  E-value=0.53  Score=49.65  Aligned_cols=48  Identities=21%  Similarity=0.243  Sum_probs=39.0

Q ss_pred             HHHHHHHhhccceeeecchhhccccc-CCCcccchhhhHHHHHHHHHHHHhh
Q psy14360        102 FFGTVIFAFEGIALVLPLQREMKKKK-NFNSSFGVLNMGSILIIALMLSMGF  152 (471)
Q Consensus       102 ~~g~~~faf~~~~~~~~i~~~m~~p~-~~~~~~~v~~~s~~~~~~~Y~~~g~  152 (471)
                      .+....|+|.|-.......+|+|||+ +++|   ++..+..++..+|....+
T Consensus       199 ~~~~~~faf~G~E~~a~~a~E~knP~r~~Pr---Ai~~~~i~~~~l~~l~~~  247 (507)
T TIGR00910       199 VFVAFIGAYMGVEASASHINELENPGRDYPL---AMILLMIAAICLDAIGGF  247 (507)
T ss_pred             HHHHHHHHHhcHHHHHHHHHHccCCcccccH---HHHHHHHHHHHHHHHHHH
Confidence            44446889999999999999999995 5888   888888888888876443

Lowered cutoffs from 1000/500 to 800/300, promoted from subfamily to equivalog, and put into a Genome Property DHH 9/1/2009

>PRK11357 frlA putative fructoselysine transporter; Provisional

Probab=95.44  E-value=0.22  Score=51.63  Aligned_cols=55  Identities=13%  Similarity=0.210  Sum_probs=45.9

Q ss_pred             cchhHHHHHHHHhhccceeeecchhhccccc-CCCcccchhhhHHHHHHHHHHHHhhhh
Q psy14360         97 QQIPLFFGTVIFAFEGIALVLPLQREMKKKK-NFNSSFGVLNMGSILIIALMLSMGFFG  154 (471)
Q Consensus        97 ~~~~~~~g~~~faf~~~~~~~~i~~~m~~p~-~~~~~~~v~~~s~~~~~~~Y~~~g~~g  154 (471)
                      .++...+....|+|.|-.......+|+|||+ +.+|   ++..+..++.++|.......
T Consensus       195 ~~~~~~~~~~~~af~G~e~~~~~a~E~k~P~r~iP~---Ai~~~~~i~~~~Y~l~~~~~  250 (445)
T PRK11357        195 MALLAGISATSWSYTGMASICYMTGEIKNPGKTMPR---ALIGSCLLVLVLYTLLALVI  250 (445)
T ss_pred             HHHHHHHHHHHHHHhhHHHHHhhHHHhcCccccchH---HHHHHHHHHHHHHHHHHHHH
Confidence            3455567778999999999999999999996 4688   89999999999998876543

>PRK10580 proY putative proline-specific permease; Provisional

Probab=95.41  E-value=0.4  Score=49.84  Aligned_cols=53  Identities=19%  Similarity=0.318  Sum_probs=41.3

Q ss_pred             chhHHHHHHHHhhccceeeecchhhcccccC-CCcccchhhhHHHHHHHHHHHHhhh
Q psy14360         98 QIPLFFGTVIFAFEGIALVLPLQREMKKKKN-FNSSFGVLNMGSILIIALMLSMGFF  153 (471)
Q Consensus        98 ~~~~~~g~~~faf~~~~~~~~i~~~m~~p~~-~~~~~~v~~~s~~~~~~~Y~~~g~~  153 (471)
                      ++..++....|+|.|-.......+|+|||+| .++   ++..+......+|......
T Consensus       200 ~~~~~~~~~~fsf~G~e~~~~~a~E~knP~k~iPr---Ai~~~~~~~~~~y~~~~~~  253 (457)
T PRK10580        200 GMVMSLQMVMFAYGGIEIIGITAGEAKDPEKSIPR---AINSVPMRILVFYVGTLFV  253 (457)
T ss_pred             HHHHHHHHHHHHHhCHHHHHHHHHHhcChhhHHHH---HHHHHHHHHHHHHHHHHHH
Confidence            4556677889999999999999999999965 667   6666666667777766443

>COG0531 PotE Amino acid transporters [Amino acid transport and metabolism]

Probab=95.37  E-value=0.32  Score=50.41  Aligned_cols=60  Identities=15%  Similarity=0.204  Sum_probs=50.1

Q ss_pred             chhHHHHHHHHhhccceeeecchhhcccc-cCCCcccchhhhHHHHHHHHHHHHhhhhhhcccC
Q psy14360         98 QIPLFFGTVIFAFEGIALVLPLQREMKKK-KNFNSSFGVLNMGSILIIALMLSMGFFGYLKYGE  160 (471)
Q Consensus        98 ~~~~~~g~~~faf~~~~~~~~i~~~m~~p-~~~~~~~~v~~~s~~~~~~~Y~~~g~~gY~~fG~  160 (471)
                      ++...+....++|.|-....+..+|+||| |+.+|   .+..++..+..+|......-....++
T Consensus       202 ~~~~~~~~~~~~f~G~e~~~~~a~E~knp~r~ip~---aii~~~~~~~~~y~~~~~~~~~~~~~  262 (466)
T COG0531         202 GILAAILLAFFAFTGFEAIATLAEEVKNPKRTIPR---AIILSLLIVLILYILGALVIVGVLPA  262 (466)
T ss_pred             HHHHHHHHHHHHhhcHHHHHHHHHHhcCccccccH---HHHHHHHHHHHHHHHHHHHHHhCccH
Confidence            45566777899999999999999999999 45688   88899999999999888877666654

>TIGR00930 2a30 K-Cl cotransporter

Probab=95.35  E-value=0.65  Score=52.61  Aligned_cols=52  Identities=12%  Similarity=0.137  Sum_probs=44.8

Q ss_pred             hhHHHHHHHHhhccceeeecchhhccccc-CCCcccchhhhHHHHHHHHHHHHhhh
Q psy14360         99 IPLFFGTVIFAFEGIALVLPLQREMKKKK-NFNSSFGVLNMGSILIIALMLSMGFF  153 (471)
Q Consensus        99 ~~~~~g~~~faf~~~~~~~~i~~~m~~p~-~~~~~~~v~~~s~~~~~~~Y~~~g~~  153 (471)
                      +...++++.+||.|-.....+-+|+|||+ +.++   .+..+..+++++|+++.++
T Consensus       282 f~~~~ai~F~A~tGi~agan~sgElKnP~r~IPr---atl~ai~i~~vlYllv~~~  334 (953)
T TIGR00930       282 FFSLFGIFFPSVTGILAGANISGDLKDPQKAIPK---GTLLAILTTTVVYLGSVVL  334 (953)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhccChhhhhHH---HHHHHHHHHHHHHHHHHHH
Confidence            66677888889999888899999999995 4778   8999999999999999754

>PRK11387 S-methylmethionine transporter; Provisional

Probab=95.34  E-value=0.31  Score=50.89  Aligned_cols=53  Identities=15%  Similarity=0.174  Sum_probs=43.5

Q ss_pred             hhHHHHHHHHhhccceeeecchhhcccccC-CCcccchhhhHHHHHHHHHHHHhhhh
Q psy14360         99 IPLFFGTVIFAFEGIALVLPLQREMKKKKN-FNSSFGVLNMGSILIIALMLSMGFFG  154 (471)
Q Consensus        99 ~~~~~g~~~faf~~~~~~~~i~~~m~~p~~-~~~~~~v~~~s~~~~~~~Y~~~g~~g  154 (471)
                      +...+....|+|.|-.......+|+|||+| .++   ++..+...+..+|.......
T Consensus       208 ~~~~~~~~~faf~G~e~~~~~a~E~knP~r~iPr---Ai~~~~~~~~~~y~~~~~~~  261 (471)
T PRK11387        208 ILMTMVAVNFAFSGTELIGIAAGETENPAKVIPV---AIRTTIARLVIFFVGTVLVL  261 (471)
T ss_pred             HHHHHHHHHHHHcCHHHHHHHHHHhcChhhHHHH---HHHHHHHHHHHHHHHHHHHH
Confidence            445566688999999999999999999965 777   88888888888888876543

>TIGR00913 2A0310 amino acid permease (yeast)

Probab=95.25  E-value=0.81  Score=47.84  Aligned_cols=54  Identities=19%  Similarity=0.220  Sum_probs=44.7

Q ss_pred             cchhHHHHHHHHhhccceeeecchhhccccc-CCCcccchhhhHHHHHHHHHHHHhhh
Q psy14360         97 QQIPLFFGTVIFAFEGIALVLPLQREMKKKK-NFNSSFGVLNMGSILIIALMLSMGFF  153 (471)
Q Consensus        97 ~~~~~~~g~~~faf~~~~~~~~i~~~m~~p~-~~~~~~~v~~~s~~~~~~~Y~~~g~~  153 (471)
                      .++..++....|+|.|-.......+|+|||+ +.+|   ++..+...+..+|......
T Consensus       197 ~~~~~~~~~~~~af~G~e~~~~~a~E~knP~r~iPr---ai~~~~~~~~~~Y~l~~~~  251 (478)
T TIGR00913       197 KGVCSVFVTAAFSFGGTELVALTAGEAANPRKSIPR---AAKRTFWRILVFYILTLFL  251 (478)
T ss_pred             HHHHHHHHHHHhhhccHHHHHHHHHhhcChhhHHHH---HHHHHHHHHHHHHHHHHHH
Confidence            3455566778999999999999999999995 5778   8889999999999987543

>TIGR00911 2A0308 L-type amino acid transporter

Probab=94.62  E-value=0.16  Score=53.53  Aligned_cols=56  Identities=14%  Similarity=0.176  Sum_probs=47.2

Q ss_pred             cchhHHHHHHHHhhccceeeecchhhccccc-CCCcccchhhhHHHHHHHHHHHHhhhhh
Q psy14360         97 QQIPLFFGTVIFAFEGIALVLPLQREMKKKK-NFNSSFGVLNMGSILIIALMLSMGFFGY  155 (471)
Q Consensus        97 ~~~~~~~g~~~faf~~~~~~~~i~~~m~~p~-~~~~~~~v~~~s~~~~~~~Y~~~g~~gY  155 (471)
                      .++..++....|+|.|-.......+|+|||+ +.+|   ++..+..++.++|......-.
T Consensus       235 ~~~~~a~~~~~~af~G~e~~~~~a~E~knP~r~iPr---Ai~~s~~~v~~~Y~l~~~a~~  291 (501)
T TIGR00911       235 GGIVLAFYSGIWAYGGWNYLNFVTEEVKNPYRTLPI---AIIISMPIVTFIYVLTNIAYF  291 (501)
T ss_pred             HHHHHHHHHHHHHHHhHHHHhhhHHHhcCchhhhHH---HHHHHHHHHHHHHHHHHHHHH
Confidence            3456677889999999999999999999995 5788   899999999999999865443

>PRK15238 inner membrane transporter YjeM; Provisional

Probab=94.51  E-value=1.4  Score=46.25  Aligned_cols=53  Identities=25%  Similarity=0.249  Sum_probs=43.6

Q ss_pred             hhHHHHHHHHhhccceeeecchhhccccc-CCCcccchhhhHHHHHHHHHHHHhhhh
Q psy14360         99 IPLFFGTVIFAFEGIALVLPLQREMKKKK-NFNSSFGVLNMGSILIIALMLSMGFFG  154 (471)
Q Consensus        99 ~~~~~g~~~faf~~~~~~~~i~~~m~~p~-~~~~~~~v~~~s~~~~~~~Y~~~g~~g  154 (471)
                      +..++....|+|.|-.......+|+|||+ +.+|   ++..+...+..+|....++-
T Consensus       213 ~~~~~~~~~~~f~G~e~~~~~a~E~~~p~~~~p~---ai~~~~~~~~~~y~l~~~~~  266 (496)
T PRK15238        213 VLSFVVFAIFAYGGIEAVGGLVDKTENPEKNFPK---GIIIAAIVISIGYSLAIFLW  266 (496)
T ss_pred             HHHHHHHHHHHHHhHHHHHHHHHhccCCCccccH---HHHHHHHHHHHHHHHHHHHH
Confidence            44455667899999999999999999995 5888   88899998899998765443

>TIGR00907 2A0304 amino acid permease (GABA permease)

Probab=94.50  E-value=1.4  Score=46.23  Aligned_cols=44  Identities=7%  Similarity=-0.007  Sum_probs=33.6

Q ss_pred             HHHHHHhhccceeeecchhhccccc-CCCcccchhhhHHHHHHHHHHH
Q psy14360        103 FGTVIFAFEGIALVLPLQREMKKKK-NFNSSFGVLNMGSILIIALMLS  149 (471)
Q Consensus       103 ~g~~~faf~~~~~~~~i~~~m~~p~-~~~~~~~v~~~s~~~~~~~Y~~  149 (471)
                      +-...|+|.|-.......+|+|||+ +.+|   ++..+..+..+++..
T Consensus       223 ~~~~~fsf~G~e~~~~~a~E~knP~r~iP~---Ai~~s~~i~~~~~~~  267 (482)
T TIGR00907       223 LLNPAWSMTGYDGTAHMAEEIENPEVVGPR---AIIGAVAIGIVTGFC  267 (482)
T ss_pred             hhhhHHHhcCcchhhHHHHhcCChhhhcCH---HHHHHHHHHHHHHHH
Confidence            3446699999999999999999995 5777   777777666554443

>PRK10836 lysine transporter; Provisional

Probab=94.31  E-value=1.1  Score=47.10  Aligned_cols=49  Identities=16%  Similarity=0.073  Sum_probs=40.5

Q ss_pred             HHHHHHhhccceeeecchhhccccc-CCCcccchhhhHHHHHHHHHHHHhhhh
Q psy14360        103 FGTVIFAFEGIALVLPLQREMKKKK-NFNSSFGVLNMGSILIIALMLSMGFFG  154 (471)
Q Consensus       103 ~g~~~faf~~~~~~~~i~~~m~~p~-~~~~~~~v~~~s~~~~~~~Y~~~g~~g  154 (471)
                      .....|+|.|-.......+|+|||+ +.+|   ++..++..+.++|......-
T Consensus       211 ~~~~~faf~G~e~~~~~a~E~knP~r~iPr---Ai~~~~~~v~~~Yvl~~~~~  260 (489)
T PRK10836        211 AMIVGFSFQGTELIGIAAGESEDPAKNIPR---AVRQVFWRILLFYVFAILII  260 (489)
T ss_pred             HHHHHHHHccHHHHHHHHHHhcCHHHHHHH---HHHHHHHHHHHHHHHHHHHH
Confidence            3446699999999999999999995 4677   88888999999999776543

>PRK11021 putative transporter; Provisional

Probab=93.91  E-value=0.11  Score=53.05  Aligned_cols=56  Identities=20%  Similarity=0.310  Sum_probs=48.3

Q ss_pred             cccchhhhhhhHhhhccccccchhhHHhhhcCC-CCCcccchhhhHHHHHHHHHHHHHhh
Q psy14360        383 HIQQIPLFFGTVIFAFEGIALVLPLQREMKKKK-NFNSSFGVLNMGSILIIALMLSMGFF  441 (471)
Q Consensus       383 ~~~~~~~~~g~~~faf~~~~~~~~i~~~M~~p~-~f~~~~~vl~~~~~~~~~~y~~~g~~  441 (471)
                      ++.++..++....|+|.|.......-+|+|||+ +.+|   ....+..++..+|+.....
T Consensus       175 ~~~~~~~~~~~~~~af~G~e~~~~~a~E~k~P~k~iPr---Ai~~~~~~~~~lYil~~~~  231 (410)
T PRK11021        175 EWSGLFAALGVMFWCFVGIEAFAHLASEFKNPERDFPR---ALMIGLLLAGLVYWACTVV  231 (410)
T ss_pred             cHHHHHHHHHHHHHHHhcHHHHHhhHHhccCccccccH---HHHHHHHHHHHHHHHHHHH
Confidence            456677888889999999999999999999986 5777   7889999999999987654

>TIGR00912 2A0309 spore germination protein (amino acid permease)

Probab=92.78  E-value=1.2  Score=44.57  Aligned_cols=202  Identities=15%  Similarity=0.165  Sum_probs=104.8

Q ss_pred             HhhccccchhhHHHHHHHHHHHH-hheeeeeecccCCCCCC-CCcc-ccccchhHHH-HHHHHhhccceeeecchhhccc
Q psy14360         50 AMIRNLKYIAPISAVANLIMGLG-IAAIYYYILQDLPPVST-RNYV-GHIQQIPLFF-GTVIFAFEGIALVLPLQREMKK  125 (471)
Q Consensus        50 ~~~~~l~~l~~~S~~~~~~~~~~-~~~v~~~~~~~~~~~~~-~~~~-~~~~~~~~~~-g~~~faf~~~~~~~~i~~~m~~  125 (471)
                      ...+.++..+..+.+-....+.. ...+......+. +.++ .|.+ .++.+..... ....++|.+.........++||
T Consensus       129 ~~~~Gi~~i~r~~~i~~~~~i~~~~~il~~~~~~~~-~~~~l~P~~~~g~~~~~~~~~~~~~~~f~g~~i~~~~~~~~~~  207 (359)
T TIGR00912       129 IVRKGIEVLLRTAEILLIIFLILFILVLILLAPKLG-NIKNLLPVLENGLSPILKGAYPVVTFAFGEIEIFFLLFPLLSK  207 (359)
T ss_pred             HHHccHHHHHHHHHHHHHHHHHHHHHHHHHHhcccc-cHHHccCccccCcHHHHhhhhHHhhhhhHHHHHHHHHHHHhCC
Confidence            44567777777777655444443 122222121111 1111 1111 1222322222 3567888888888888889999


Q ss_pred             ccCCCcccchhhhHHHHHHHHHHHHhhhhhhcccCccccceeeecCCC------C-CC---hHHHHHHHHHHHHHHHhhc
Q psy14360        126 KKNFNSSFGVLNMGSILIIALMLSMGFFGYLKYGENVKGSITLNLSDR------K-DD---PLALVVVGSIGFGILCTYS  195 (471)
Q Consensus       126 p~~~~~~~~v~~~s~~~~~~~Y~~~g~~gY~~fG~~~~~~il~nl~~~------~-~~---~~~~v~~~~~~l~l~~s~p  195 (471)
                      |||.+|   ....+...+..+|...-...-..+|.+..++.  .+|..      + .+   ..-.+.-.....+.+....
T Consensus       208 ~~~~~k---~~~~~~~~~~~ly~~~~~~~i~~lg~~~~~~~--~~P~~~~~~~i~~~~f~eR~e~~~~~~w~~~~f~~~~  282 (359)
T TIGR00912       208 KKKIKK---SIIKAIIIGVLLYILTTFVSISVFGGNVTKNL--YWPTLELIKLINIGDFIERFELIVMTFWVFIIFVKIA  282 (359)
T ss_pred             hhhhHH---HHHHHHHHHHHHHHHHHHHHHheecHHHhhhh--cccHHHHHHHhhHhHHHHHHHHHHHHHHHHHHHHHHH
Confidence            999888   88899999999999887777777775432211  11110      0 00   1111222334455555565


Q ss_pred             cccchhHHHHHHHHhhhcCCCChhhHHHHHHHHHHHHHHHHHHHhhcch--------hhhhhhhhhhhHhhhhhHHHHhh
Q psy14360        196 LQFYVPVAIIWAELEEKYGPFKHPAFGETILRVSLVLLTCKLALVVVGS--------IGFGILCTYSLQFYVPVAIIWAE  267 (471)
Q Consensus       196 l~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~iA~~ip~~--------slvGs~~~~~l~fi~P~l~~l~~  267 (471)
                      +.++...+.+.+.+..    ++++   ....-.+.  +...++ ..||-        ...+ ..+....+++|.++.+..
T Consensus       283 ~~~~~~~~~~~~~~~~----~~~~---~~~~~~~~--~~~~~~-~~~~~~~~~~~~~~~~~-~~~~~~~~~~P~ll~~i~  351 (359)
T TIGR00912       283 FYLYIAVKGLSKLFKK----RKYS---ILILPVLM--VIFSIS-FFPDSSNQLFDYLEFLP-IIAIVFFLLLPLILFIIV  351 (359)
T ss_pred             HHHHHHHHHHHHHhCC----CCcc---hhHHHHHH--HHHHHH-HccchHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHH
Confidence            6666666666654432    2221   11111111  222222 34652        2222 334567778999877776


Q ss_pred             h
Q psy14360        268 L  268 (471)
Q Consensus       268 ~  268 (471)
                      .
T Consensus       352 ~  352 (359)
T TIGR00912       352 K  352 (359)
T ss_pred             H
Confidence            6

This model describes spore germination protein GerKB and paralogs from Bacillus subtilis, Clostridium tetani, and other known or predicted endospore-forming members of the Firmicutes (low-GC Gram positive bacteria). Members show some similarity to amino acid permeases.

>KOG1286|consensus

Probab=91.82  E-value=8.1  Score=41.08  Aligned_cols=110  Identities=15%  Similarity=0.195  Sum_probs=70.6

Q ss_pred             ccchhHHHHHHHHhhccceeeecchhhcccccC-CCcccchhhhHHHHHHHHHHHHhhhh-hhcccCc--cccceeeecC
Q psy14360         96 IQQIPLFFGTVIFAFEGIALVLPLQREMKKKKN-FNSSFGVLNMGSILIIALMLSMGFFG-YLKYGEN--VKGSITLNLS  171 (471)
Q Consensus        96 ~~~~~~~~g~~~faf~~~~~~~~i~~~m~~p~~-~~~~~~v~~~s~~~~~~~Y~~~g~~g-Y~~fG~~--~~~~il~nl~  171 (471)
                      +.++...+.+..|+|.|--.+-...+|-|||+| .++   +...++..+..+|....+.- -..=.++  ..++....-|
T Consensus       231 f~Gv~s~~~~~~fsf~G~e~va~~a~E~kNP~k~IP~---ai~~s~~ri~~~Yi~~~~~l~l~vpy~~~~L~~~~~~~sp  307 (554)
T KOG1286|consen  231 FKGVLSGAATAFFSFIGFELVATTAEEAKNPRKAIPK---AIKQSLLRILLFYILSSIVLGLLVPYNDPRLDPGAALASP  307 (554)
T ss_pred             cceeeHHHHHHHHHHhhHHHHHHHHHhccCCcccccH---HHHHHHHHHHHHHHHHHHHheEEeccCccccCCCCccccH
Confidence            567778889999999999999999999999954 777   88899999999999886652 2221122  2222111101


Q ss_pred             CC---CCChHH---HHHHHHHHHHHHHhhccccchhHHHHHHH
Q psy14360        172 DR---KDDPLA---LVVVGSIGFGILCTYSLQFYVPVAIIWAE  208 (471)
Q Consensus       172 ~~---~~~~~~---~v~~~~~~l~l~~s~pl~~~p~~~~~~~~  208 (471)
                      -.   ++.+..   .+++....++++.+---.+++..+.+...
T Consensus       308 F~iai~~~~~k~~~~ivna~iL~~~~s~~n~~~y~~sR~l~am  350 (554)
T KOG1286|consen  308 FVIAIGNAGAKYLPHIVNAGILIGLLSSLNSSLYAGSRVLYAL  350 (554)
T ss_pred             HHHHHhccCccccchhhhHHHHHHHHHHHHHHhHHhHHHHHHH
Confidence            00   011122   25666666666655555667777777665

>TIGR00906 2A0303 cationic amino acid transport permease

Probab=91.79  E-value=0.34  Score=51.69  Aligned_cols=56  Identities=14%  Similarity=0.107  Sum_probs=47.3

Q ss_pred             ccchhhhhhhHhhhccccccchhhHHhhhcCCC-CCcccchhhhHHHHHHHHHHHHHhhh
Q psy14360        384 IQQIPLFFGTVIFAFEGIALVLPLQREMKKKKN-FNSSFGVLNMGSILIIALMLSMGFFG  442 (471)
Q Consensus       384 ~~~~~~~~g~~~faf~~~~~~~~i~~~M~~p~~-f~~~~~vl~~~~~~~~~~y~~~g~~g  442 (471)
                      +.++..+.....|+|.|-......-+|+|||+| .++   ....+..+++++|+.+...-
T Consensus       230 ~~g~l~g~~~~~faf~Gfd~v~~~aeE~knP~r~iP~---aii~sl~i~~vlY~lv~~~l  286 (557)
T TIGR00906       230 FTGVLSGAATCFFAFIGFDAIATTGEEVKNPQRAIPI---GIVTSLLVCFVAYFLMSAAL  286 (557)
T ss_pred             hHHHHHHHHHHHHHHhhHHHHHHhHHhccCccccccH---HHHHHHHHHHHHHHHHHHHH
Confidence            345667788899999999999999999999985 676   78899999999999876543

>TIGR00909 2A0306 amino acid transporter

Probab=90.93  E-value=0.36  Score=49.63  Aligned_cols=58  Identities=16%  Similarity=0.212  Sum_probs=47.9

Q ss_pred             cccchhhhhhhHhhhccccccchhhHHhhhcCC-CCCcccchhhhHHHHHHHHHHHHHhhhh
Q psy14360        383 HIQQIPLFFGTVIFAFEGIALVLPLQREMKKKK-NFNSSFGVLNMGSILIIALMLSMGFFGY  443 (471)
Q Consensus       383 ~~~~~~~~~g~~~faf~~~~~~~~i~~~M~~p~-~f~~~~~vl~~~~~~~~~~y~~~g~~gY  443 (471)
                      ++.++..++...+|+|.|........+|+|||+ +.+|   ++..+..++.++|+.......
T Consensus       193 ~~~~~~~~~~~~~~af~G~e~~~~~~~E~~~p~r~ip~---ai~~~~~~~~v~Yil~~~~~~  251 (429)
T TIGR00909       193 GFGGVGAATALVFFAFIGFEAISTAAEEVKNPERDIPK---AIILSLIVVTLLYVLVAAVIL  251 (429)
T ss_pred             cHHHHHHHHHHHHHHHhhHHHHHhhHHhccCccccccH---HHHHHHHHHHHHHHHHHHHHh
Confidence            345667778889999999999999999999986 4677   788899999999998865443

>TIGR02358 thia_cytX probable hydroxymethylpyrimidine transporter CytX

Probab=90.02  E-value=11  Score=38.33  Aligned_cols=139  Identities=10%  Similarity=0.063  Sum_probs=65.9

Q ss_pred             HHhhHhhHHHHHHhhccCcchHHHHHHHHHHHHHHHhhccccchhhHHHHHHHHHHHHhheeeeeecccC--CCCCCCCc
Q psy14360         15 FVFVAQSSHQICLALDIDYKLHYHMAIMLAPILFTAMIRNLKYIAPISAVANLIMGLGIAAIYYYILQDL--PPVSTRNY   92 (471)
Q Consensus        15 ~i~~~~~l~~~~~~~~~~~~~~~~~~i~~~~~~pl~~~~~l~~l~~~S~~~~~~~~~~~~~v~~~~~~~~--~~~~~~~~   92 (471)
                      ....||.++.+.+...+..+...++.+..++..+.+. ...|.++++..++........+...+....+.  .+..+.+ 
T Consensus        92 ~~~gg~~l~~~~~~~~~~~~~~~~~~i~~~l~~~~~~-~G~~~i~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~-  169 (386)
T TIGR02358        92 IIVGAKAASLLGGRLFGEESPMLWILIVGILVTLWLL-SGPLAFVWLNNWSVWLLLIATLWLLVVVFSKADLSELWNRA-  169 (386)
T ss_pred             HHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchhhhcCCC-
Confidence            3455777877776532222233344444444444443 24455555555555444443332222111111  1111111 


Q ss_pred             cccccchhHHHHHHH-HhhccceeeecchhhcccccCCCcccchhhhHHHHHHHHHHHHhhhhhhcccC
Q psy14360         93 VGHIQQIPLFFGTVI-FAFEGIALVLPLQREMKKKKNFNSSFGVLNMGSILIIALMLSMGFFGYLKYGE  160 (471)
Q Consensus        93 ~~~~~~~~~~~g~~~-faf~~~~~~~~i~~~m~~p~~~~~~~~v~~~s~~~~~~~Y~~~g~~gY~~fG~  160 (471)
                       .+ ..+...++... +.-......+...+..|+|+|.-+   ....+..+...+-..+|...-.+.++
T Consensus       170 -~~-~s~~~~~~~~~~~~~swa~~~~DysRy~k~~~~~~~---~~~~G~~i~~~~~~~~G~~~~~a~~~  233 (386)
T TIGR02358       170 -GD-MSFAVAVELVIAMPLSWLPLIADYTRFARNPRHVFL---GTVLGYFIGSCWMYFLGLAVTLATGQ  233 (386)
T ss_pred             -CC-ccHHHHHHHHHHHHHHHHHHccchhhhcCCCcceeh---HHHHHHHHHHHHHHHHHHHHHHhcCC
Confidence             11 22222222211 101223347888888887766555   55566667777777777777666654

On the basis of a phylogenomic study of thiamine biosythetic, salvage, and transporter genes and a highly conserved RNA element THI, this protein family has been identified as a probable transporter of hydroxymethylpyrimidine (HMP), the phosphorylated (by ThiD) form of which gets joined (by ThiE) to hydroxyethylthiazole phosphate to make thiamine phosphate.

>PF13520 AA_permease_2: Amino acid permease; PDB: 3NCY_A 3GI8_C 3GIA_A 3GI9_C 3OB6_A 3L1L_A 3LRC_D 3LRB_B 4DJK_A 4DJI_A

Probab=88.15  E-value=0.43  Score=48.92  Aligned_cols=63  Identities=16%  Similarity=0.217  Sum_probs=52.0

Q ss_pred             ccccchhhhhhhHhhhccccccchhhHHhhhcCCCCCcccchhhhHHHHHHHHHHHHHhhhhhhccC
Q psy14360        382 GHIQQIPLFFGTVIFAFEGIALVLPLQREMKKKKNFNSSFGVLNMGSILIIALMLSMGFFGYLKYGE  448 (471)
Q Consensus       382 ~~~~~~~~~~g~~~faf~~~~~~~~i~~~M~~p~~f~~~~~vl~~~~~~~~~~y~~~g~~gY~~fG~  448 (471)
                      ..++....++...+|+|.|-.......+|+|| |+.+|   .+..+..++.++|......-....++
T Consensus       185 ~~~~~~~~~~~~~~~~~~G~e~~~~~~~E~k~-k~ip~---ai~~~~~~~~i~y~l~~~~~~~~~~~  247 (426)
T PF13520_consen  185 SGWPGFLAGFSVAFFAFSGFEAIASLAEENKN-KTIPR---AIIISIIIVAIIYILFSIALLGALPD  247 (426)
T ss_dssp             SSSSHHHHHHHHHGGGGTTTTHHHHGGGGSSS-HHHHH---HHHHHHHHHHHHHHHHHHHHHTTSTH
T ss_pred             ccccchhhHHHHHHhhcccccccccccccccc-hhhee---ecccchhHHHHHHhhhhheeeecccc
Confidence            34555678888999999999999999999998 67887   88899999999999887665555544

...

>KOG1289|consensus

Probab=87.21  E-value=9.1  Score=39.99  Aligned_cols=104  Identities=12%  Similarity=-0.003  Sum_probs=51.8

Q ss_pred             ccchhhHHHHHHHHHHHHhheeeeeec---ccCCCCC-C------CCcccccc--ch--hHHHHHHHHhhccceeeecch
Q psy14360         55 LKYIAPISAVANLIMGLGIAAIYYYIL---QDLPPVS-T------RNYVGHIQ--QI--PLFFGTVIFAFEGIALVLPLQ  120 (471)
Q Consensus        55 l~~l~~~S~~~~~~~~~~~~~v~~~~~---~~~~~~~-~------~~~~~~~~--~~--~~~~g~~~faf~~~~~~~~i~  120 (471)
                      -|.+++++.+++...++..++.++...   .+.++.. +      .....+|+  ++  ...+-.-+..+.|--...++.
T Consensus       196 ~r~l~~I~~~~~~~~ll~~~i~~I~lla~~~~k~gFns~~~iF~~f~N~sgw~~~G~afil~f~~~~wt~sGyDa~~H~a  275 (550)
T KOG1289|consen  196 TRVLARINSVSVYLNLLFLVILMITLLAASSKKTGFNSGSFIFGKFNNYSGWKNNGWAFILGFFNPAWTMSGYDAAAHMA  275 (550)
T ss_pred             cHHHHHHHHHHHHHHHHHHHHHHHHhhhccCCCCCCCCCceeeecccccCCCCcchHHHHHhhccceeEEeccCchHHHH
Confidence            367888888887776655544332221   1111111 1      11111222  22  223333455556667778889


Q ss_pred             hhcccccC-CCcccchhhhHHHHHHHHHHHHhhhhhhcccCc
Q psy14360        121 REMKKKKN-FNSSFGVLNMGSILIIALMLSMGFFGYLKYGEN  161 (471)
Q Consensus       121 ~~m~~p~~-~~~~~~v~~~s~~~~~~~Y~~~g~~gY~~fG~~  161 (471)
                      +|-||+++ -++   .+..+..+..++=..+-+.-...-++|
T Consensus       276 EE~~nAsk~aPr---gIi~s~~i~~i~gw~~~I~i~~~i~~D  314 (550)
T KOG1289|consen  276 EETKNASKAAPR---GIISSIAIGFILGWIIIIGIAYTIPDD  314 (550)
T ss_pred             HHhcchhhhccH---HHHHHHHHHHHHHHHHHHHHHHhccch
Confidence            99999965 444   555555554444333333333344443

>PRK10435 cadB lysine/cadaverine antiporter; Provisional

Probab=87.01  E-value=0.66  Score=47.89  Aligned_cols=60  Identities=13%  Similarity=0.022  Sum_probs=49.9

Q ss_pred             ccchhhhhhhHhhhccccccchhhHHhhhcCC-CCCcccchhhhHHHHHHHHHHHHHhhhhhhc
Q psy14360        384 IQQIPLFFGTVIFAFEGIALVLPLQREMKKKK-NFNSSFGVLNMGSILIIALMLSMGFFGYLKY  446 (471)
Q Consensus       384 ~~~~~~~~g~~~faf~~~~~~~~i~~~M~~p~-~f~~~~~vl~~~~~~~~~~y~~~g~~gY~~f  446 (471)
                      ..++..++....|+|.|-......-+|+|||+ +.+|   +...+...++++|+..........
T Consensus       186 ~~~~~~a~~~~~faf~G~E~~~~~a~E~knP~r~iPr---Ai~~~~~iv~ilYil~~~~~~~~~  246 (435)
T PRK10435        186 GHAIIKSILLCLWAFVGVESAAVSTGMVKNPKRTVPL---ATMLGTGLAGIIYIAATQVISGMF  246 (435)
T ss_pred             HHHHHHHHHHHHHHHhhHHHHHHHHHHhhCccccccH---HHHHHHHHHHHHHHHHHHHHHhcC
Confidence            45667778889999999999999999999995 6888   788899999999998876554333

>COG1113 AnsP Gamma-aminobutyrate permease and related permeases [Amino acid transport and metabolism]

Probab=86.99  E-value=5.1  Score=40.91  Aligned_cols=170  Identities=14%  Similarity=0.094  Sum_probs=90.0

Q ss_pred             cccchhHHHHHHHHhhccceeeecchhhcccccC-CCcccchhhhHHHHHHHHHH-----HHhhhhhhcccCccccceee
Q psy14360         95 HIQQIPLFFGTVIFAFEGIALVLPLQREMKKKKN-FNSSFGVLNMGSILIIALML-----SMGFFGYLKYGENVKGSITL  168 (471)
Q Consensus        95 ~~~~~~~~~g~~~faf~~~~~~~~i~~~m~~p~~-~~~~~~v~~~s~~~~~~~Y~-----~~g~~gY~~fG~~~~~~il~  168 (471)
                      .+.++..++-+.+|||.+.-.+=.-.+|-|||+| .+|   +.+.-..=..++|+     .+.+.-|-.++++. ++...
T Consensus       201 G~~g~~~~~~~v~Faf~GiElvGitA~Et~dP~k~ipk---Ain~V~~RI~iFYvgsl~vi~~l~PW~~~~~~~-SPFV~  276 (462)
T COG1113         201 GFLGFLSALQIVMFAFGGIELVGITAAEAKDPEKAIPK---AINSVIWRILIFYVGSLFVILSLYPWNQIGEDG-SPFVT  276 (462)
T ss_pred             chHHHHHHHHHHHHHHhhHHHHHHHHHhhcChhhHHHH---HHhhhhHHHHHHHHHHHHHHheeccccccCCCC-CcHHH
Confidence            3456777888999999999988888999999976 445   44333333344443     44444444444332 22222


Q ss_pred             ecCCCCCChHHHHHHHHHHHHHHHhhccccchhHHHHHHHHhhh--------cCCCChhhHHHHHHHHHHHHHHHHHHHh
Q psy14360        169 NLSDRKDDPLALVVVGSIGFGILCTYSLQFYVPVAIIWAELEEK--------YGPFKHPAFGETILRVSLVLLTCKLALV  240 (471)
Q Consensus       169 nl~~~~~~~~~~v~~~~~~l~l~~s~pl~~~p~~~~~~~~~~~~--------~~~~~~~~~~~~~~r~~~~~~~~~iA~~  240 (471)
                      -+..-.-.....+.+.....+.+.+.=--+|...+++...-.++        .+++.-+ +...........++.++.+.
T Consensus       277 ~f~~iGi~~Aa~i~N~VVLtAa~S~~NSglystsRmL~~la~~g~APk~~~klsk~gVP-~~ai~~s~~~~~~~V~Lny~  355 (462)
T COG1113         277 VFSLIGIPFAAGIMNFVVLTAALSALNSGLYSTSRMLYSLAKQGDAPKAFAKLSKRGVP-VNAILLSAVVLLLGVVLNYI  355 (462)
T ss_pred             HHHHcCCcccccceeEEEeechhhcccccccccchHHHHHhhcCcccHhHhhccccCCC-HHHHHHHHHHHHHHHHHHhh
Confidence            21110001222233333333333333334455556666553221        1222222 55577778888888899999


Q ss_pred             hcc--hhhhhhhhh--hhhHhhhhhHHHHhhhc
Q psy14360        241 VVG--SIGFGILCT--YSLQFYVPVAIIWAELE  269 (471)
Q Consensus       241 ip~--~slvGs~~~--~~l~fi~P~l~~l~~~~  269 (471)
                      .|.  |.++=+.++  ......+=.+.|+|.++
T Consensus       356 ~P~~vF~~v~s~s~~~~l~vW~~I~~s~l~~rk  388 (462)
T COG1113         356 LPEKVFELVTSSSGLGLLFVWLMILLSQLKLRK  388 (462)
T ss_pred             cchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            996  333332222  22333444566777763

>PRK11357 frlA putative fructoselysine transporter; Provisional

Probab=85.86  E-value=1.3  Score=45.92  Aligned_cols=55  Identities=13%  Similarity=0.245  Sum_probs=46.1

Q ss_pred             ccchhhhhhhHhhhccccccchhhHHhhhcCCC-CCcccchhhhHHHHHHHHHHHHHhh
Q psy14360        384 IQQIPLFFGTVIFAFEGIALVLPLQREMKKKKN-FNSSFGVLNMGSILIIALMLSMGFF  441 (471)
Q Consensus       384 ~~~~~~~~g~~~faf~~~~~~~~i~~~M~~p~~-f~~~~~vl~~~~~~~~~~y~~~g~~  441 (471)
                      +.++..++....|+|.|-.......+|+|||+| .+|   ++..+..+++++|+.....
T Consensus       194 ~~~~~~~~~~~~~af~G~e~~~~~a~E~k~P~r~iP~---Ai~~~~~i~~~~Y~l~~~~  249 (445)
T PRK11357        194 FMALLAGISATSWSYTGMASICYMTGEIKNPGKTMPR---ALIGSCLLVLVLYTLLALV  249 (445)
T ss_pred             HHHHHHHHHHHHHHHhhHHHHHhhHHHhcCccccchH---HHHHHHHHHHHHHHHHHHH
Confidence            445667778899999999999999999999974 577   7889999999999877653

>TIGR00912 2A0309 spore germination protein (amino acid permease)

Probab=85.80  E-value=0.63  Score=46.62  Aligned_cols=57  Identities=26%  Similarity=0.355  Sum_probs=48.6

Q ss_pred             hHhhhccccccchhhHHhhhcCCCCCcccchhhhHHHHHHHHHHHHHhhhhhhccCcccc
Q psy14360        393 TVIFAFEGIALVLPLQREMKKKKNFNSSFGVLNMGSILIIALMLSMGFFGYLKYGENVKG  452 (471)
Q Consensus       393 ~~~faf~~~~~~~~i~~~M~~p~~f~~~~~vl~~~~~~~~~~y~~~g~~gY~~fG~~~~~  452 (471)
                      ...++|.|.........++|||++.+|   ....+..+++.+|...-...-..+|.+..+
T Consensus       187 ~~~~~f~g~~i~~~~~~~~~~~~~~~k---~~~~~~~~~~~ly~~~~~~~i~~lg~~~~~  243 (359)
T TIGR00912       187 VVTFAFGEIEIFFLLFPLLSKKKKIKK---SIIKAIIIGVLLYILTTFVSISVFGGNVTK  243 (359)
T ss_pred             HhhhhhHHHHHHHHHHHHhCChhhhHH---HHHHHHHHHHHHHHHHHHHHHheecHHHhh
Confidence            567899999999999999999998888   778899999999998888888888865543

This model describes spore germination protein GerKB and paralogs from Bacillus subtilis, Clostridium tetani, and other known or predicted endospore-forming members of the Firmicutes (low-GC Gram positive bacteria). Members show some similarity to amino acid permeases.

>COG1457 CodB Purine-cytosine permease and related proteins [Nucleotide transport and metabolism]

Probab=84.72  E-value=36  Score=35.04  Aligned_cols=196  Identities=11%  Similarity=0.004  Sum_probs=97.3

Q ss_pred             CcchHHHHHHHHHHHHHHHh--hccccchhhHHHHHHHHHHHHhheeeeeecccC--CCCCCCCccccccchhHHHHH-H
Q psy14360         32 DYKLHYHMAIMLAPILFTAM--IRNLKYIAPISAVANLIMGLGIAAIYYYILQDL--PPVSTRNYVGHIQQIPLFFGT-V  106 (471)
Q Consensus        32 ~~~~~~~~~i~~~~~~pl~~--~~~l~~l~~~S~~~~~~~~~~~~~v~~~~~~~~--~~~~~~~~~~~~~~~~~~~g~-~  106 (471)
                      ..+...++++...++...+.  .|-++.+...+..-....+....   +...+..  .+....+....+..+..+++. +
T Consensus       127 ~~~~~~~ili~g~l~~l~~ifG~r~l~~l~~~a~~~~~~lf~~l~---~~~~~~~~~~~~~~~~~~~~~~~fl~a~slv~  203 (442)
T COG1457         127 GLPVWAGILIIGVLMTLVTIFGYRALHKLERIAVPLLLLLFLYLL---ALLFRSKGGLDALWVKGPTSPLSFLSALSLVI  203 (442)
T ss_pred             CCcHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHH---HHHHhcccccceeeccCCCcchhHHHHHHHHH
Confidence            44555666655555444444  66677777766655444333222   2222211  111111112223333333332 2


Q ss_pred             HHhhccceeeecchhhcccccCCCcccchhhhHHHHHHHHHHHHhhhhhhcccCcc-ccceeeecCCCCCChHHHHHHHH
Q psy14360        107 IFAFEGIALVLPLQREMKKKKNFNSSFGVLNMGSILIIALMLSMGFFGYLKYGENV-KGSITLNLSDRKDDPLALVVVGS  185 (471)
Q Consensus       107 ~faf~~~~~~~~i~~~m~~p~~~~~~~~v~~~s~~~~~~~Y~~~g~~gY~~fG~~~-~~~il~nl~~~~~~~~~~v~~~~  185 (471)
                      .+.-..-+....+.+-+|+|+. ++.+.....+......+-...|...-.+-|++. ...+...+     +.+...+.+.
T Consensus       204 g~~~sw~~~~aDysRy~~~~t~-~~~~~~~~~G~~l~~~~~~ilGa~~a~a~g~~~~~~~~~~~~-----G~~g~~~~li  277 (442)
T COG1457         204 GSFASWGPYAADYSRYAPSPTP-SKAFLAAVLGFFLGTSFMMILGAALAAAAGNADSIADVMLGL-----GGFGLPAILI  277 (442)
T ss_pred             HHHHhhhhhhhhhhhhcCCCch-HHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCchHHHHHHhc-----ccHHHHHHHH
Confidence            2222344556778888888874 341113444455556666777888887777654 22222222     2255667777


Q ss_pred             HHHHHHHhhccccchhHHHHHHHHhhhcCCCChhhHHHHHHHHHHHHHHHHHHHhhcch
Q psy14360        186 IGFGILCTYSLQFYVPVAIIWAELEEKYGPFKHPAFGETILRVSLVLLTCKLALVVVGS  244 (471)
Q Consensus       186 ~~l~l~~s~pl~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~iA~~ip~~  244 (471)
                      ..++...+=-.++|...-.+.+...+      .++..+.+.....  ..+++|+..|.+
T Consensus       278 l~l~~~ttN~~nlYsa~ls~~~i~~~------l~k~~~~v~~~v~--igt~la~~~~~f  328 (442)
T COG1457         278 LVLGTVTTNANNLYSAGLSFANIIPK------LSKVTRVVIAGVG--IGTLLALAGPFF  328 (442)
T ss_pred             HHHHHHhcCcHHHHHHHHHHHHhhhh------hhhHHHHHHHHHH--HHHHHHHHHHHH
Confidence            77777777777777766555544433      1113332222222  556666666643

>PF03222 Trp_Tyr_perm: Tryptophan/tyrosine permease family; InterPro: IPR018227 Amino acid permeases are integral membrane proteins involved in the transport of amino acids into the cell

Probab=83.62  E-value=0.69  Score=47.09  Aligned_cols=55  Identities=16%  Similarity=0.230  Sum_probs=44.8

Q ss_pred             cccccchhhhhhhHhhhccccccchhhHHhhhc-CCCCCcccchhhhHHHHHHHHHHHH
Q psy14360        381 VGHIQQIPLFFGTVIFAFEGIALVLPLQREMKK-KKNFNSSFGVLNMGSILIIALMLSM  438 (471)
Q Consensus       381 ~~~~~~~~~~~g~~~faf~~~~~~~~i~~~M~~-p~~f~~~~~vl~~~~~~~~~~y~~~  438 (471)
                      ..++...+..+++.+++|+.|.++|++.+.+++ ++|.+|   +...+..+..++|+..
T Consensus       180 ~~~~~~~~~~lPv~~~Sf~f~~ivPsl~~~~~~d~~k~~~---ai~~Gs~i~lv~yl~w  235 (394)
T PF03222_consen  180 PSDWSYILPALPVLVFSFGFHNIVPSLVKYLGGDPKKIRK---AIIIGSLIPLVMYLLW  235 (394)
T ss_pred             cccHHHHHHHHHHHHHHHHHHhhhHHHHHHhCccHHHHHH---HHHHHHHHHHHHHHHH
Confidence            457788889999999999999999999999984 555555   7777777777777754

A number of such proteins have been found to be evolutionary related [, , ]. Aromatic amino acids are concentrated in the cytoplasm of Escherichia coli by 4 distinct transport systems: a general aromatic amino acid permease, and a specific permease for each of the 3 types (Phe, Tyr and Trp) []. It has been shown [] that some permeases in E. coli and related bacteria are evolutionary related. These permeases are proteins of about 400 to 420 amino acids and are located in the cytoplasmic membrane and, like bacterial sugar/cation transporters, are thought to contain 12 transmembrane (TM) regions [] - hydropathy analysis, however, is inconclusive, suggesting the possibility of 10 to 12 membrane-spanning domains []. The best conserved domain is a stretch of 20 residues which seems to be located in a cytoplasmic loop between the first and second transmembrane region.

>TIGR00911 2A0308 L-type amino acid transporter

Probab=83.34  E-value=1.9  Score=45.43  Aligned_cols=57  Identities=14%  Similarity=0.169  Sum_probs=47.5

Q ss_pred             ccchhhhhhhHhhhccccccchhhHHhhhcCC-CCCcccchhhhHHHHHHHHHHHHHhhhh
Q psy14360        384 IQQIPLFFGTVIFAFEGIALVLPLQREMKKKK-NFNSSFGVLNMGSILIIALMLSMGFFGY  443 (471)
Q Consensus       384 ~~~~~~~~g~~~faf~~~~~~~~i~~~M~~p~-~f~~~~~vl~~~~~~~~~~y~~~g~~gY  443 (471)
                      ..++..++....|+|.|-.......+|+|||+ +.+|   ++..+..+++++|+.....-.
T Consensus       234 ~~~~~~a~~~~~~af~G~e~~~~~a~E~knP~r~iPr---Ai~~s~~~v~~~Y~l~~~a~~  291 (501)
T TIGR00911       234 AGGIVLAFYSGIWAYGGWNYLNFVTEEVKNPYRTLPI---AIIISMPIVTFIYVLTNIAYF  291 (501)
T ss_pred             HHHHHHHHHHHHHHHHhHHHHhhhHHHhcCchhhhHH---HHHHHHHHHHHHHHHHHHHHH
Confidence            44566778889999999999999999999996 4677   788899999999998865433

>COG0531 PotE Amino acid transporters [Amino acid transport and metabolism]

Probab=82.90  E-value=1.4  Score=45.69  Aligned_cols=61  Identities=16%  Similarity=0.198  Sum_probs=51.1

Q ss_pred             cchhhhhhhHhhhccccccchhhHHhhhcCC-CCCcccchhhhHHHHHHHHHHHHHhhhhhhccC
Q psy14360        385 QQIPLFFGTVIFAFEGIALVLPLQREMKKKK-NFNSSFGVLNMGSILIIALMLSMGFFGYLKYGE  448 (471)
Q Consensus       385 ~~~~~~~g~~~faf~~~~~~~~i~~~M~~p~-~f~~~~~vl~~~~~~~~~~y~~~g~~gY~~fG~  448 (471)
                      ..+...+....++|.|-....+.-+|+|||+ +.+|   ....+...++.+|+.....--...++
T Consensus       201 ~~~~~~~~~~~~~f~G~e~~~~~a~E~knp~r~ip~---aii~~~~~~~~~y~~~~~~~~~~~~~  262 (466)
T COG0531         201 GGILAAILLAFFAFTGFEAIATLAEEVKNPKRTIPR---AIILSLLIVLILYILGALVIVGVLPA  262 (466)
T ss_pred             HHHHHHHHHHHHHhhcHHHHHHHHHHhcCccccccH---HHHHHHHHHHHHHHHHHHHHHhCccH
Confidence            3566777788999999999999999999985 5577   77788899999999988877776665

>PRK10483 tryptophan permease; Provisional

Probab=82.39  E-value=1.5  Score=44.63  Aligned_cols=52  Identities=17%  Similarity=0.153  Sum_probs=42.3

Q ss_pred             ccchhhhhhhHhhhccccccchhhHHhhhc-CCCCCcccchhhhHHHHHHHHHHHH
Q psy14360        384 IQQIPLFFGTVIFAFEGIALVLPLQREMKK-KKNFNSSFGVLNMGSILIIALMLSM  438 (471)
Q Consensus       384 ~~~~~~~~g~~~faf~~~~~~~~i~~~M~~-p~~f~~~~~vl~~~~~~~~~~y~~~  438 (471)
                      +.....++++.+++|+-|.++|++.+.+++ ++|-+|   ++..+..+..++|+..
T Consensus       191 ~~~~~~alPvl~~SFgfh~iIPsl~~y~~~d~~kir~---~I~iGs~Iplv~yl~W  243 (414)
T PRK10483        191 APYLLMTLPFCLASFGYHGNVPSLMKYYGKDPKTIVK---CLVYGTLMALALYTIW  243 (414)
T ss_pred             HHHHHHHHHHHHhhccCCCcchHHHHHhCcCHHHHHH---HHHHHHHHHHHHHHHH
Confidence            445678999999999999999999999875 444444   7888888888888763

>PRK10655 potE putrescine transporter; Provisional

Probab=82.39  E-value=2.1  Score=44.23  Aligned_cols=56  Identities=9%  Similarity=0.071  Sum_probs=45.8

Q ss_pred             cchhhhhhhHhhhccccccchhhHHhhhcCC-CCCcccchhhhHHHHHHHHHHHHHhhhh
Q psy14360        385 QQIPLFFGTVIFAFEGIALVLPLQREMKKKK-NFNSSFGVLNMGSILIIALMLSMGFFGY  443 (471)
Q Consensus       385 ~~~~~~~g~~~faf~~~~~~~~i~~~M~~p~-~f~~~~~vl~~~~~~~~~~y~~~g~~gY  443 (471)
                      .++..++....|+|.|-......-+|+|||+ +.+|   ++..+..++..+|+.......
T Consensus       189 ~~~~~~~~~~~~af~G~e~~~~~a~E~k~P~r~iPr---Ai~~~~~~~~~~Y~l~~~~~~  245 (438)
T PRK10655        189 SAVGSSIAMTLWAFLGLESACANSDAVENPERNVPI---AVLGGTLGAAVIYIVSTNVIA  245 (438)
T ss_pred             HHHHHHHHHHHHHHhhhhhhhhhHHHhhCccccccH---HHHHHHHHHHHHHHHHHHHHH
Confidence            3445567778999999999999999999987 6777   888999999999988665433

>PF00324 AA_permease: Amino acid permease; InterPro: IPR004841 Amino acid permeases are integral membrane proteins involved in the transport of amino acids into the cell

Probab=82.35  E-value=2.8  Score=43.78  Aligned_cols=61  Identities=15%  Similarity=0.120  Sum_probs=50.0

Q ss_pred             ccchhHHHHHHHHhhccceeeecchhhcccccC-CCcccchhhhHHHHHHHHHHHHhhhhhhccc
Q psy14360         96 IQQIPLFFGTVIFAFEGIALVLPLQREMKKKKN-FNSSFGVLNMGSILIIALMLSMGFFGYLKYG  159 (471)
Q Consensus        96 ~~~~~~~~g~~~faf~~~~~~~~i~~~m~~p~~-~~~~~~v~~~s~~~~~~~Y~~~g~~gY~~fG  159 (471)
                      +.++..++....++|.|-......-+|.||||| .+|   ....+.....++|.......=...+
T Consensus       199 ~~~~~~~~~~~~~af~G~e~~a~~a~E~k~P~k~IPr---a~~~~~~~~~v~y~~~~~~~~~~~~  260 (478)
T PF00324_consen  199 FSGFFAALVFAFFAFVGFESIAILAEEAKNPRKTIPR---ATLLSVLRIGVFYVLTSYALTLAVP  260 (478)
T ss_pred             hhHHHHhhhhhhcccccccccccccccCCCchhhhhh---HhhhhhhhhhhhhhhhhhhcccccC
Confidence            456777888899999999999999999999964 677   8888888888899887665544444

A number of such proteins have been found to be evolutionary related [], [], []. These proteins seem to contain up to 12 transmembrane segments. The best conserved region in this family is located in the second transmembrane segment. This domain is found in a wide variety of permeases, as well as several hypothetical proteins. ; GO: 0006810 transport, 0055085 transmembrane transport, 0016020 membrane

>PRK10197 gamma-aminobutyrate transporter; Provisional

Probab=82.29  E-value=2.1  Score=44.28  Aligned_cols=56  Identities=16%  Similarity=0.100  Sum_probs=45.8

Q ss_pred             cccchhhhhhhHhhhccccccchhhHHhhhcCCC-CCcccchhhhHHHHHHHHHHHHHhh
Q psy14360        383 HIQQIPLFFGTVIFAFEGIALVLPLQREMKKKKN-FNSSFGVLNMGSILIIALMLSMGFF  441 (471)
Q Consensus       383 ~~~~~~~~~g~~~faf~~~~~~~~i~~~M~~p~~-f~~~~~vl~~~~~~~~~~y~~~g~~  441 (471)
                      .+.++..++....|+|.|-.......+|+|||+| .+|   +...+...+..+|+.....
T Consensus       179 g~~~~~~a~~~~~faf~G~e~~~~~a~E~knP~r~iPr---ai~~~~~~i~i~Yil~~~~  235 (446)
T PRK10197        179 GFGAVLSAMLITMFSFMGAEIVTIAAAESDTPEKHIVR---ATNSVIWRISIFYLCSIFV  235 (446)
T ss_pred             cHHHHHHHHHHHHHHHhCHHHHHHHHHHhcChhhhHHH---HHHHHHHHHHHHHHHHHHH
Confidence            3456778888899999999999999999999975 666   6667888888888876554

>COG0833 LysP Amino acid transporters [Amino acid transport and metabolism]

Probab=82.29  E-value=62  Score=34.04  Aligned_cols=166  Identities=12%  Similarity=0.074  Sum_probs=88.7

Q ss_pred             ccchhHHHHHHHHhhccceeeecchhhcccccC-CCcccchhhhHHHHHHHHHHHHhh-hhhhcccCc-----------c
Q psy14360         96 IQQIPLFFGTVIFAFEGIALVLPLQREMKKKKN-FNSSFGVLNMGSILIIALMLSMGF-FGYLKYGEN-----------V  162 (471)
Q Consensus        96 ~~~~~~~~g~~~faf~~~~~~~~i~~~m~~p~~-~~~~~~v~~~s~~~~~~~Y~~~g~-~gY~~fG~~-----------~  162 (471)
                      +.++...+-+..|+|.|.-.+---..|-+||+| .+|   +..-..-=..++|+..-+ .|-+.-.+|           .
T Consensus       233 f~g~~~v~v~a~Fsf~GtElvgiaAgEs~nP~K~iPk---Aik~vfwRIl~FYi~si~~ig~lvPy~dp~Ll~~~~~~~~  309 (541)
T COG0833         233 FKGFCSVFVIAAFSFSGTELVGLAAGESENPRKSIPK---AIKQVFWRILLFYILSIFVIGLLVPYNDPRLLGNSSSGVA  309 (541)
T ss_pred             hHHHHHHHhhheeeeeceeeeeeeecccCCchhhhHH---HHHHHHHHHHHHHHHHHHHheEEccCCCcccccCCcCCcc
Confidence            344555556688999999999889999999965 666   555555555666654322 222222222           1


Q ss_pred             ccceeeecCCCCCChHHHHHHHHHHHHHHHhhccccchhHHHHHHHHhh--------hcCCCChhhHHHHHHHHHHHHHH
Q psy14360        163 KGSITLNLSDRKDDPLALVVVGSIGFGILCTYSLQFYVPVAIIWAELEE--------KYGPFKHPAFGETILRVSLVLLT  234 (471)
Q Consensus       163 ~~~il~nl~~~~~~~~~~v~~~~~~l~l~~s~pl~~~p~~~~~~~~~~~--------~~~~~~~~~~~~~~~r~~~~~~~  234 (471)
                      +++...-+.+..-.....+.+..+..+++.+-==.+|...+.++..-.+        +.+++..+ +....++..+-+++
T Consensus       310 ~SPFvia~~~~Gi~~~~~imNaVIL~svlSa~NS~lYasSR~L~sLA~~g~APk~f~~~~r~GvP-~~al~vt~~fg~la  388 (541)
T COG0833         310 ASPFVIAIKNAGIPVAASIMNAVILTSVLSAANSGLYASSRMLYSLAKQGKAPKIFAKVDRRGVP-LVALLVTLLFGLLA  388 (541)
T ss_pred             CCChhHhHHhcCCccchHHHHHHHHHHHHHHhhccchHHHHHHHHHHhcCCCchHHHhhCCCCCc-hHHHHHHHHHHHHH
Confidence            1222222211111234556677777777666555667788888775433        23333333 44444444444444


Q ss_pred             HHHHHhhcc--h-----hhhhhhhhhhhHhhhhhHHHHhhh
Q psy14360        235 CKLALVVVG--S-----IGFGILCTYSLQFYVPVAIIWAEL  268 (471)
Q Consensus       235 ~~iA~~ip~--~-----slvGs~~~~~l~fi~P~l~~l~~~  268 (471)
                      .+-+.. ..  .     ++.|-  +..++.+-=++-|++.+
T Consensus       389 fl~~~~-~~~~vf~wL~~isg~--s~~i~W~~I~~shirFR  426 (541)
T COG0833         389 FLNSSF-KETTVFNWLLNISGL--SGFIAWGSICLSHIRFR  426 (541)
T ss_pred             HHHhcc-CcchHHHHHHHHHHH--HHHHHHHHHHHHHHHHH
Confidence            444443 33  2     44432  23334444455666655

>TIGR00814 stp serine transporter

Probab=81.87  E-value=1.1  Score=45.77  Aligned_cols=65  Identities=11%  Similarity=0.267  Sum_probs=45.3

Q ss_pred             ccchhhhhhhHhhhccccccchhhHHhhhcC----C-CCCcccchhhhHHHHHHHHHHHHHhhhhhhccC
Q psy14360        384 IQQIPLFFGTVIFAFEGIALVLPLQREMKKK----K-NFNSSFGVLNMGSILIIALMLSMGFFGYLKYGE  448 (471)
Q Consensus       384 ~~~~~~~~g~~~faf~~~~~~~~i~~~M~~p----~-~f~~~~~vl~~~~~~~~~~y~~~g~~gY~~fG~  448 (471)
                      +.+...++++.++||.+|+.+++...+.|+.    + +.+|.++++..+..+..++|+..-...-+..+.
T Consensus       185 ~~~i~~alpv~~~SF~~~~iIssl~~~~~~~~~~~~~~~~k~~k~i~~~~~i~~~~y~~~~~s~~~~l~~  254 (397)
T TIGR00814       185 LKTLWLTIPVMVFSFNHSPIISSFAISYREEYGDKEFAERKCLRIMKGASLILVATVMFFVFSCVLSLSP  254 (397)
T ss_pred             HHHHHHHHHHHHHHHHccccchHHHHHHHHHcCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCH
Confidence            4567899999999999999999998655422    1 123333477788888887777665555555543

The HAAAP family includes well characterized aromatic amino acid:H+ symport permeases and hydroxy amino acid permeases. This subfamily is specific for hydroxy amino acid transporters and includes the serine permease, SdaC, of E. coli, and the threonine permease, TdcC, of E. coli.

>PRK15132 tyrosine transporter TyrP; Provisional

Probab=81.81  E-value=1.1  Score=45.57  Aligned_cols=55  Identities=11%  Similarity=0.028  Sum_probs=43.0

Q ss_pred             chhhhhhhHhhhccccccchhhHHhhhc-CCCCCcccchhhhHHHHHHHHHHHHHhhhh
Q psy14360        386 QIPLFFGTVIFAFEGIALVLPLQREMKK-KKNFNSSFGVLNMGSILIIALMLSMGFFGY  443 (471)
Q Consensus       386 ~~~~~~g~~~faf~~~~~~~~i~~~M~~-p~~f~~~~~vl~~~~~~~~~~y~~~g~~gY  443 (471)
                      .....+++..++|+-|.++|++.+.+++ ++|-+|   +...+..+..++|+..=....
T Consensus       182 ~~~~~iPvl~~SFgfh~iIpsl~~y~~~~~~~~~k---~i~~Gs~i~li~yl~W~~~~l  237 (403)
T PRK15132        182 LALSAIPVIFTSFGFHGSVPSIVSYMGGNIRKLRW---VFIIGSAIPLVAYIFWQLATL  237 (403)
T ss_pred             HHHHHHHHHHHHhhCCcccHHHHHHhCcCHHHHHH---HHHHHHHHHHHHHHHHHHHHH
Confidence            3788999999999999999999999975 445555   777888888888875544433

>TIGR00910 2A0307_GadC glutamate:gamma-aminobutyrate antiporter

Probab=81.17  E-value=2.3  Score=44.92  Aligned_cols=47  Identities=19%  Similarity=0.198  Sum_probs=37.7

Q ss_pred             hhhhHhhhccccccchhhHHhhhcCC-CCCcccchhhhHHHHHHHHHHHHH
Q psy14360        390 FFGTVIFAFEGIALVLPLQREMKKKK-NFNSSFGVLNMGSILIIALMLSMG  439 (471)
Q Consensus       390 ~~g~~~faf~~~~~~~~i~~~M~~p~-~f~~~~~vl~~~~~~~~~~y~~~g  439 (471)
                      .+-..+|+|.|-......-+|||||+ +++|   ++..+..++..+|....
T Consensus       199 ~~~~~~faf~G~E~~a~~a~E~knP~r~~Pr---Ai~~~~i~~~~l~~l~~  246 (507)
T TIGR00910       199 VFVAFIGAYMGVEASASHINELENPGRDYPL---AMILLMIAAICLDAIGG  246 (507)
T ss_pred             HHHHHHHHHhcHHHHHHHHHHccCCcccccH---HHHHHHHHHHHHHHHHH
Confidence            33346899999999999999999996 5888   77778887888886533

Lowered cutoffs from 1000/500 to 800/300, promoted from subfamily to equivalog, and put into a Genome Property DHH 9/1/2009

>TIGR00908 2A0305 ethanolamine permease

Probab=80.43  E-value=2  Score=44.43  Aligned_cols=52  Identities=17%  Similarity=0.096  Sum_probs=41.2

Q ss_pred             chhhhhhhHhhhccccccchhhHHhhhcCC-CCCcccchhhhHHHHHHHHHHHHHh
Q psy14360        386 QIPLFFGTVIFAFEGIALVLPLQREMKKKK-NFNSSFGVLNMGSILIIALMLSMGF  440 (471)
Q Consensus       386 ~~~~~~g~~~faf~~~~~~~~i~~~M~~p~-~f~~~~~vl~~~~~~~~~~y~~~g~  440 (471)
                      ++..++....|+|.|.......-+|+|||+ +.+|   ++..+..++..+|+..-.
T Consensus       192 ~~~~~~~~~~~af~G~e~~~~~aeE~k~P~r~ipr---ai~~s~~~~~~~~~~~~~  244 (442)
T TIGR00908       192 GVFAAIPFAIWFFLAVEGVAMAAEETKNPKRDIPR---GLIGAILTLLALAAGILV  244 (442)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhcCcccccCH---HHHHHHHHHHHHHHHHHH
Confidence            445666667899999999999999999996 4677   777788877787876643

The three genes used as the seed for this model (from Burkholderia pseudomallei, Pseudomonas aeruginosa and Clostridium acetobutylicum are all adjacent to genes for the catabolism of ethanolamine. Most if not all of the hits to this model have a similar arrangement of genes. This group is a member of the Amino Acid-Polyamine-Organocation (APC) Superfamily.

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

No hit with e-value below 0.005

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	471
3l1l_A	445	Arginine/agmatine antiporter; TCDB 2.A.3.2.5, ADIC	97.37
4djk_A	511	Probable glutamate/gamma-aminobutyrate antiporter;	97.14
3gia_A	444	Uncharacterized protein MJ0609; membrane protein,	96.89
3l1l_A	445	Arginine/agmatine antiporter; TCDB 2.A.3.2.5, ADIC	93.44
3gia_A	444	Uncharacterized protein MJ0609; membrane protein,	92.49
4djk_A	511	Probable glutamate/gamma-aminobutyrate antiporter;	88.24

>3l1l_A Arginine/agmatine antiporter; TCDB 2.A.3.2.5, ADIC, Arg-bound, amino-acid transport, cell inner membrane, cell membrane, membrane; HET: ARG BNG; 3.00A {Escherichia coli} PDB: 3h5m_A* 3h6b_A 3lrb_A 3lrc_A 3ob6_A* 3hqk_A 3ncy_A

Probab=97.37  E-value=0.00083  Score=67.86  Aligned_cols=62  Identities=10%  Similarity=0.020  Sum_probs=50.6

Q ss_pred             ccchhHHHHHHHHhhccceeeecchhhcccc-cCCCcccchhhhHHHHHHHHHHHHhhhhhhcccC
Q psy14360         96 IQQIPLFFGTVIFAFEGIALVLPLQREMKKK-KNFNSSFGVLNMGSILIIALMLSMGFFGYLKYGE  160 (471)
Q Consensus        96 ~~~~~~~~g~~~faf~~~~~~~~i~~~m~~p-~~~~~~~~v~~~s~~~~~~~Y~~~g~~gY~~fG~  160 (471)
                      +.++...+....|+|.|........+|+||| |+.+|   .+..+...+.++|...........+.
T Consensus       190 ~~~~~~~~~~~~~af~G~e~~~~~~~e~k~p~r~ip~---a~~~~~~~~~~~y~~~~~~~~~~~~~  252 (445)
T 3l1l_A          190 FGAIQSTLNVTLWSFIGVESASVAAGVVKNPKRNVPI---ATIGGVLIAAVCYVLSTTAIMGMIPN  252 (445)
T ss_dssp             ---HHHHHHHHHHTTTTTTHHHHGGGGBSSHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHSCT
T ss_pred             HHHHHHHHHHHHHHHHhHHHHHHHHHHhcCccccccH---HHHHHHHHHHHHHHHHHHHHHhcCCH
Confidence            4466777888999999999999999999999 55778   88999999999999988776665553

>4djk_A Probable glutamate/gamma-aminobutyrate antiporter; LEUT, glutamate-GABA antiporter, transport protein; 3.10A {Escherichia coli} PDB: 4dji_A

Probab=97.14  E-value=0.0061  Score=62.63  Aligned_cols=104  Identities=13%  Similarity=0.121  Sum_probs=67.6

Q ss_pred             hHHHHHHHHhhccceeeecchhhcccccC-CCcccchhhhHHHHHHHHHHHHhhhhhhcccCcccc---c-------eee
Q psy14360        100 PLFFGTVIFAFEGIALVLPLQREMKKKKN-FNSSFGVLNMGSILIIALMLSMGFFGYLKYGENVKG---S-------ITL  168 (471)
Q Consensus       100 ~~~~g~~~faf~~~~~~~~i~~~m~~p~~-~~~~~~v~~~s~~~~~~~Y~~~g~~gY~~fG~~~~~---~-------il~  168 (471)
                      ...+....|+|.|........+|+|||+| .+|   .+..+..++.++|....+.-....+++...   .       +..
T Consensus       204 ~~~~~~~~~a~~G~e~~~~~a~E~k~P~k~ip~---ai~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  280 (511)
T 4djk_A          204 LVVFVAFILSYMGVEASATHVNEMSNPGRDYPL---AMLLLMVAAICLSSVGGLSIAMVIPGNEINLSAGVMQTFTVLMS  280 (511)
T ss_dssp             TTTHHHHHHHHTTGGGGTGGGSSSSCCTTTHHH---HHHHHHHHHHHHHHHHHHHHHTTSCTTSCCSSSTHHHHHHHHHS
T ss_pred             HHHHHHHHHHHhhHHHHHHHHHhccCcccchhH---HHHHHHHHHHHHHHHHHHHHHeecCHhhccccchHHHHHHHHHH
Confidence            34567789999999999999999999954 677   899999999999999887766666543211   1       111


Q ss_pred             ecCCCCCChHHHHHHHHHHHHHHHhhccccchhHHHHHH
Q psy14360        169 NLSDRKDDPLALVVVGSIGFGILCTYSLQFYVPVAIIWA  207 (471)
Q Consensus       169 nl~~~~~~~~~~v~~~~~~l~l~~s~pl~~~p~~~~~~~  207 (471)
                      +... ...+...+..+...++.+.+.--......+.++.
T Consensus       281 ~~g~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~sR~l~a  318 (511)
T 4djk_A          281 HVAP-EIEWTVRVISALLLLGVLAEIASWIVGPSRGMYV  318 (511)
T ss_dssp             SSCS-SCTTHHHHHHHHHHHHHHHHHHHHTTHHHHHTCH
T ss_pred             HhCc-cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            1110 0134555666666666655543333444444443

>3gia_A Uncharacterized protein MJ0609; membrane protein, transporter, cell membrane, membrane, transmembrane, transport protein; HET: D10 BCN; 2.32A {Methanocaldococcus jannaschii} PDB: 3gi9_C* 3gi8_C

Probab=96.89  E-value=0.0018  Score=65.29  Aligned_cols=60  Identities=3%  Similarity=0.164  Sum_probs=49.4

Q ss_pred             cchhHHHHHHHHhhccceeeecchhhcccccC-CCcccchhhhHHHHHHHHHHHHhhhhhhccc
Q psy14360         97 QQIPLFFGTVIFAFEGIALVLPLQREMKKKKN-FNSSFGVLNMGSILIIALMLSMGFFGYLKYG  159 (471)
Q Consensus        97 ~~~~~~~g~~~faf~~~~~~~~i~~~m~~p~~-~~~~~~v~~~s~~~~~~~Y~~~g~~gY~~fG  159 (471)
                      .++...+....|+|.|........+|+|||+| .+|   .+..+...+.++|....+......+
T Consensus       188 ~~~~~~~~~~~~a~~G~e~~~~~~~e~k~P~r~ip~---ai~~~~~~~~~~y~~~~~~~~~~~~  248 (444)
T 3gia_A          188 SGMIFASAIFFLSYMGFGVITNASEHIENPKKNVPR---AIFISILIVMFVYVGVAISAIGNLP  248 (444)
T ss_dssp             HHHHHHHHHGGGGGTHHHHHHTTGGGBSSHHHHHHH---HHHHHHHHHHHHHHHHHHHHHTTSC
T ss_pred             HHHHHHHHHHHHHHHhHHHHHHHHHHccCcccchhH---HHHHHHHHHHHHHHHHHHHHHhCCC
Confidence            35666777788999999999999999999965 788   8999999999999988776554444

>3l1l_A Arginine/agmatine antiporter; TCDB 2.A.3.2.5, ADIC, Arg-bound, amino-acid transport, cell inner membrane, cell membrane, membrane; HET: ARG BNG; 3.00A {Escherichia coli} PDB: 3h5m_A* 3h6b_A 3lrb_A 3lrc_A 3ob6_A* 3hqk_A 3ncy_A

Probab=93.44  E-value=0.063  Score=53.84  Aligned_cols=63  Identities=11%  Similarity=0.020  Sum_probs=51.2

Q ss_pred             ccchhhhhhhHhhhccccccchhhHHhhhcCC-CCCcccchhhhHHHHHHHHHHHHHhhhhhhccCc
Q psy14360        384 IQQIPLFFGTVIFAFEGIALVLPLQREMKKKK-NFNSSFGVLNMGSILIIALMLSMGFFGYLKYGEN  449 (471)
Q Consensus       384 ~~~~~~~~g~~~faf~~~~~~~~i~~~M~~p~-~f~~~~~vl~~~~~~~~~~y~~~g~~gY~~fG~~  449 (471)
                      +.++..++....|+|.|........+|+|||+ +.+|   ....+...++++|+..........+.+
T Consensus       190 ~~~~~~~~~~~~~af~G~e~~~~~~~e~k~p~r~ip~---a~~~~~~~~~~~y~~~~~~~~~~~~~~  253 (445)
T 3l1l_A          190 FGAIQSTLNVTLWSFIGVESASVAAGVVKNPKRNVPI---ATIGGVLIAAVCYVLSTTAIMGMIPNA  253 (445)
T ss_dssp             ---HHHHHHHHHHTTTTTTHHHHGGGGBSSHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHSCTT
T ss_pred             HHHHHHHHHHHHHHHHhHHHHHHHHHHhcCccccccH---HHHHHHHHHHHHHHHHHHHHHhcCCHH
Confidence            55677888889999999999999999999995 5677   788899999999999887766666543

>3gia_A Uncharacterized protein MJ0609; membrane protein, transporter, cell membrane, membrane, transmembrane, transport protein; HET: D10 BCN; 2.32A {Methanocaldococcus jannaschii} PDB: 3gi9_C* 3gi8_C

Probab=92.49  E-value=0.03  Score=56.29  Aligned_cols=62  Identities=3%  Similarity=0.171  Sum_probs=50.8

Q ss_pred             cccchhhhhhhHhhhccccccchhhHHhhhcCCC-CCcccchhhhHHHHHHHHHHHHHhhhhhhcc
Q psy14360        383 HIQQIPLFFGTVIFAFEGIALVLPLQREMKKKKN-FNSSFGVLNMGSILIIALMLSMGFFGYLKYG  447 (471)
Q Consensus       383 ~~~~~~~~~g~~~faf~~~~~~~~i~~~M~~p~~-f~~~~~vl~~~~~~~~~~y~~~g~~gY~~fG  447 (471)
                      ++.++..+.....|+|.|........+|+|||+| .+|   ....+...++++|+...+......+
T Consensus       186 g~~~~~~~~~~~~~a~~G~e~~~~~~~e~k~P~r~ip~---ai~~~~~~~~~~y~~~~~~~~~~~~  248 (444)
T 3gia_A          186 AVSGMIFASAIFFLSYMGFGVITNASEHIENPKKNVPR---AIFISILIVMFVYVGVAISAIGNLP  248 (444)
T ss_dssp             HHHHHHHHHHHGGGGGTHHHHHHTTGGGBSSHHHHHHH---HHHHHHHHHHHHHHHHHHHHHTTSC
T ss_pred             chHHHHHHHHHHHHHHHhHHHHHHHHHHccCcccchhH---HHHHHHHHHHHHHHHHHHHHHhCCC
Confidence            3456677788889999999999999999999975 777   7888999999999988766555544

>4djk_A Probable glutamate/gamma-aminobutyrate antiporter; LEUT, glutamate-GABA antiporter, transport protein; 3.10A {Escherichia coli} PDB: 4dji_A

Probab=88.24  E-value=0.63  Score=47.35  Aligned_cols=59  Identities=15%  Similarity=0.151  Sum_probs=49.1

Q ss_pred             hhhhhhHhhhccccccchhhHHhhhcCCC-CCcccchhhhHHHHHHHHHHHHHhhhhhhccCc
Q psy14360        388 PLFFGTVIFAFEGIALVLPLQREMKKKKN-FNSSFGVLNMGSILIIALMLSMGFFGYLKYGEN  449 (471)
Q Consensus       388 ~~~~g~~~faf~~~~~~~~i~~~M~~p~~-f~~~~~vl~~~~~~~~~~y~~~g~~gY~~fG~~  449 (471)
                      ..++....|+|.|........+|+|||+| .+|   .+..+..+++++|+...+.-....+++
T Consensus       204 ~~~~~~~~~a~~G~e~~~~~a~E~k~P~k~ip~---ai~~~~~~~~~~y~~~~~~~~~~~~~~  263 (511)
T 4djk_A          204 LVVFVAFILSYMGVEASATHVNEMSNPGRDYPL---AMLLLMVAAICLSSVGGLSIAMVIPGN  263 (511)
T ss_dssp             TTTHHHHHHHHTTGGGGTGGGSSSSCCTTTHHH---HHHHHHHHHHHHHHHHHHHHHTTSCTT
T ss_pred             HHHHHHHHHHHhhHHHHHHHHHhccCcccchhH---HHHHHHHHHHHHHHHHHHHHHeecCHh
Confidence            45677789999999999999999999974 566   788899999999998887766666654

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

No hit with probability above 80.00