Psyllid ID: psy14374

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180
MITAYHEGGHAVVAFFTKDSHPLHKVTHPLHKVTIIPRGVSLGHTAYIPEKERYHVTKSQLMAMMDTMMGGRAAEELVFGAEKVTSGASSDLVQATSIATHMVREFVVTIIPRGVSLGHTAYIPEKERYHVTKSQLMAMMDTMMGGRAAEELVFGAEKVTSGASSDLVQATSIATHMVRE
cEEEHHHHHHHHHHHHccccccccccccccEEEEEEEcccccEEEEEcccccccHHcHHHHHHHHHHHHHHHHHHHHHccccccccccccHHHHHHHHHHHHHHHHccccccccccccccccccccccHHHHHHHHHHHHHHHHcHHHHHHHHcccccccHHHHHHHHHHHHHHHHHHcc
ccEEHHHcHHHHHHHcccccccHccccccEEEEEEEEcccccEEEEEccccccccccHHHHHHHHHHHHccHHHHHEEEccccccccccHHHHHHHHHHHHHHHHcccccccccccccccccccccccEEccHHHHHHHHHHHHcccEHEEEEEccccccccccHHHHHHHHHHHHHHcc
mitayhegGHAVVAFFtkdshplhkvthplhkvtiiprgvslghtayipekeryhVTKSQLMAMMDTMMGGRAAEELVFGAekvtsgassdLVQATSIATHMVREFVVTIIprgvslghtayipekeryhVTKSQLMAMMDTMMGGRAAEELVFGAekvtsgassdLVQATSIATHMVRE
MITAYHEGGHAVVAFFTKDSHPLHKVTHPLHKVTIIPRGVSLghtayipekeryHVTKSQLMAMMDTMMGGRAAEELVFGAEKVTSGASSDLVQATSIATHMVREFVVTIIPRgvslghtayipekeryHVTKSQLMAMMDTMMGGRAAEELVFGAEkvtsgassdlvqatsiathmvre
MITAYHEGGHAVVAFFTKDSHPLHKVTHPLHKVTIIPRGVSLGHTAYIPEKERYHVTKSQLMAMMDTMMGGRAAEELVFGAEKVTSGASSDLVQATSIATHMVREFVVTIIPRGVSLGHTAYIPEKERYHVTKSQLMAMMDTMMGGRAAEELVFGAEKVTSGASSDLVQATSIATHMVRE
****YHEGGHAVVAFFTKDSHPLHKVTHPLHKVTIIPRGVSLGHTAYIPEKERYHVTKSQLMAMMDTMMGGRAAEELVFGAEKVTSGASSDLVQATSIATHMVREFVVTIIPRGVSLGHTAYIPEKERYHVTKSQLMAMMDTMMGGRAAEELVFG*************************
MITAYHEGGHAVVAFFTKDSHPLHKVTHPLHKVTIIPRGVSLGHTAYIPEKERYHVTKSQLMAMMDTMMGGRAAEELVFGAEKVTSGASSDLVQATSIATHMVREFVVTIIPRGVSLGHT***************LMAMMDTMMGGRAAEELVFGAEKVTSGASSDLVQATSIATHMVRE
MITAYHEGGHAVVAFFTKDSHPLHKVTHPLHKVTIIPRGVSLGHTAYIPEKERYHVTKSQLMAMMDTMMGGRAAEELVFGAEKVTSGASSDLVQATSIATHMVREFVVTIIPRGVSLGHTAYIPEKERYHVTKSQLMAMMDTMMGGRAAEELVFGAEKVTSGASSDLVQATSIATHMVRE
MITAYHEGGHAVVAFFTKDSHPLHKVTHPLHKVTIIPRGVSLGHTAYIPEKERYHVTKSQLMAMMDTMMGGRAAEELVFGAEKVTSGASSDLVQATSIATHMVREFVVTIIPRGVSLGHTAYIPEKERYHVTKSQLMAMMDTMMGGRAAEELVFGAEKVTSGASSDLVQATSIATHMVR*
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
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oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
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MITAYHEGGHAVVAFFTKDSHPLHKVTHPLHKVTIIPRGVSLGHTAYIPEKERYHVTKSQLMAMMDTMMGGRAAEELVFGAEKVTSGASSDLVQATSIATHMVREFVVTIIPRGVSLGHTAYIPEKERYHVTKSQLMAMMDTMMGGRAAEELVFGAEKVTSGASSDLVQATSIATHMVRE
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query180 2.2.26 [Sep-21-2011]
P54813723 ATP-dependent zinc metall no N/A 0.538 0.134 0.586 3e-30
Q96TA2773 ATP-dependent zinc metall yes N/A 0.544 0.126 0.523 5e-28
O88967715 ATP-dependent zinc metall yes N/A 0.544 0.137 0.523 6e-28
Q925S8715 ATP-dependent zinc metall yes N/A 0.544 0.137 0.514 2e-27
Q8LQJ8715 ATP-dependent zinc metall yes N/A 0.544 0.137 0.514 2e-25
Q9FGM0806 ATP-dependent zinc metall yes N/A 0.527 0.117 0.519 2e-24
O80983717 ATP-dependent zinc metall no N/A 0.544 0.136 0.495 4e-24
P46508662 ATP-dependent zinc metall N/A N/A 0.544 0.148 0.514 6e-24
O59824709 ATP-dependent zinc metall yes N/A 0.55 0.139 0.5 1e-23
B8H444626 ATP-dependent zinc metall yes N/A 0.605 0.174 0.462 9e-23
>sp|P54813|YME1_CAEEL ATP-dependent zinc metalloprotease YME1 homolog OS=Caenorhabditis elegans GN=ymel-1 PE=3 SV=2 Back     alignment and function desciption
 Score =  131 bits (329), Expect = 3e-30,   Method: Composition-based stats.
 Identities = 61/104 (58%), Positives = 79/104 (75%), Gaps = 7/104 (6%)

Query: 3   TAYHEGGHAVVAFFTKDSHPLHKVTHPLHKVTIIPRGVSLGHTAYIPEKERYHVTKSQLM 62
           TAYHE GH +V+ +TKD+ PLHKVT       IIPRG SLGHTA +PEK+ Y +TK+Q++
Sbjct: 506 TAYHEAGHTLVSLYTKDATPLHKVT-------IIPRGQSLGHTAMLPEKDSYQLTKAQML 558

Query: 63  AMMDTMMGGRAAEELVFGAEKVTSGASSDLVQATSIATHMVREF 106
           A +D MMGGR AEEL+FG +KVT+GA+ DL +AT +A  MV+ F
Sbjct: 559 ATLDVMMGGRVAEELIFGDDKVTTGAADDLSKATQLAVQMVKVF 602
Putative ATP-dependent protease.
Caenorhabditis elegans (taxid: 6239)
EC: 3EC: .EC: 4EC: .EC: 2EC: 4EC: .EC: -
>sp|Q96TA2|YMEL1_HUMAN ATP-dependent zinc metalloprotease YME1L1 OS=Homo sapiens GN=YME1L1 PE=1 SV=2 Back     alignment and function description
>sp|O88967|YMEL1_MOUSE ATP-dependent zinc metalloprotease YME1L1 OS=Mus musculus GN=Yme1l1 PE=2 SV=1 Back     alignment and function description
>sp|Q925S8|YMEL1_RAT ATP-dependent zinc metalloprotease YME1L1 OS=Rattus norvegicus GN=Yme1l1 PE=2 SV=1 Back     alignment and function description
>sp|Q8LQJ8|FTSH5_ORYSJ ATP-dependent zinc metalloprotease FTSH 5, mitochondrial OS=Oryza sativa subsp. japonica GN=FTSH5 PE=3 SV=1 Back     alignment and function description
>sp|Q9FGM0|FTSHB_ARATH ATP-dependent zinc metalloprotease FTSH 11, chloroplastic/mitochondrial OS=Arabidopsis thaliana GN=FTSH11 PE=1 SV=1 Back     alignment and function description
>sp|O80983|FTSH4_ARATH ATP-dependent zinc metalloprotease FTSH 4, mitochondrial OS=Arabidopsis thaliana GN=FTSH4 PE=1 SV=2 Back     alignment and function description
>sp|P46508|YME1_SCHMA ATP-dependent zinc metalloprotease YME1 homolog OS=Schistosoma mansoni PE=2 SV=1 Back     alignment and function description
>sp|O59824|YME1_SCHPO ATP-dependent zinc metalloprotease YME1 homolog OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=SPCC965.04c PE=3 SV=1 Back     alignment and function description
>sp|B8H444|FTSH_CAUCN ATP-dependent zinc metalloprotease FtsH OS=Caulobacter crescentus (strain NA1000 / CB15N) GN=ftsH PE=2 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query180
195488933 735 GE11626 [Drosophila yakuba] gi|194178624 0.544 0.133 0.828 5e-44
194757108 740 GF11321 [Drosophila ananassae] gi|190622 0.544 0.132 0.819 9e-44
195122172 752 GI18990 [Drosophila mojavensis] gi|19391 0.622 0.148 0.708 2e-43
195346897 739 GM15603 [Drosophila sechellia] gi|194135 0.544 0.132 0.809 4e-43
442624487 739 CG3499, isoform D [Drosophila melanogast 0.544 0.132 0.809 4e-43
386768486 740 CG3499, isoform C [Drosophila melanogast 0.544 0.132 0.809 4e-43
194884696 737 GG20087 [Drosophila erecta] gi|190659501 0.544 0.132 0.809 4e-43
24658770 736 CG3499, isoform B [Drosophila melanogast 0.544 0.133 0.809 4e-43
195028710 754 GH20092 [Drosophila grimshawi] gi|193903 0.544 0.129 0.8 5e-43
91086165 716 PREDICTED: similar to GA17483-PA [Tribol 0.55 0.138 0.792 7e-43
>gi|195488933|ref|XP_002092523.1| GE11626 [Drosophila yakuba] gi|194178624|gb|EDW92235.1| GE11626 [Drosophila yakuba] Back     alignment and taxonomy information
 Score =  182 bits (462), Expect = 5e-44,   Method: Compositional matrix adjust.
 Identities = 87/105 (82%), Positives = 96/105 (91%), Gaps = 7/105 (6%)

Query: 2   ITAYHEGGHAVVAFFTKDSHPLHKVTHPLHKVTIIPRGVSLGHTAYIPEKERYHVTKSQL 61
           ITAYHEGGHA+VAF+TK+SHPLHKVT       I+PRG SLGHTAYIPEKERYHVTK+QL
Sbjct: 554 ITAYHEGGHAIVAFYTKESHPLHKVT-------IMPRGPSLGHTAYIPEKERYHVTKAQL 606

Query: 62  MAMMDTMMGGRAAEELVFGAEKVTSGASSDLVQATSIATHMVREF 106
           +AMMDTMMGGRAAEELVFGAEK+TSGASSDL QATSIATHMVR++
Sbjct: 607 LAMMDTMMGGRAAEELVFGAEKITSGASSDLKQATSIATHMVRDW 651

Source: Drosophila yakuba

Species: Drosophila yakuba

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota
>gi|194757108|ref|XP_001960807.1| GF11321 [Drosophila ananassae] gi|190622105|gb|EDV37629.1| GF11321 [Drosophila ananassae] Back     alignment and taxonomy information
>gi|195122172|ref|XP_002005586.1| GI18990 [Drosophila mojavensis] gi|193910654|gb|EDW09521.1| GI18990 [Drosophila mojavensis] Back     alignment and taxonomy information
>gi|195346897|ref|XP_002039991.1| GM15603 [Drosophila sechellia] gi|194135340|gb|EDW56856.1| GM15603 [Drosophila sechellia] Back     alignment and taxonomy information
>gi|442624487|ref|NP_001261142.1| CG3499, isoform D [Drosophila melanogaster] gi|440214588|gb|AGB93673.1| CG3499, isoform D [Drosophila melanogaster] Back     alignment and taxonomy information
>gi|386768486|ref|NP_001246473.1| CG3499, isoform C [Drosophila melanogaster] gi|328751836|gb|AEB39673.1| MIP17311p [Drosophila melanogaster] gi|383302656|gb|AFH08226.1| CG3499, isoform C [Drosophila melanogaster] Back     alignment and taxonomy information
>gi|194884696|ref|XP_001976314.1| GG20087 [Drosophila erecta] gi|190659501|gb|EDV56714.1| GG20087 [Drosophila erecta] Back     alignment and taxonomy information
>gi|24658770|ref|NP_726263.1| CG3499, isoform B [Drosophila melanogaster] gi|15291271|gb|AAK92904.1| GH14313p [Drosophila melanogaster] gi|23240115|gb|AAM71132.2| CG3499, isoform B [Drosophila melanogaster] gi|220945266|gb|ACL85176.1| CG3499-PB [synthetic construct] gi|220954998|gb|ACL90042.1| CG3499-PB [synthetic construct] Back     alignment and taxonomy information
>gi|195028710|ref|XP_001987219.1| GH20092 [Drosophila grimshawi] gi|193903219|gb|EDW02086.1| GH20092 [Drosophila grimshawi] Back     alignment and taxonomy information
>gi|91086165|ref|XP_970259.1| PREDICTED: similar to GA17483-PA [Tribolium castaneum] gi|270009883|gb|EFA06331.1| hypothetical protein TcasGA2_TC009202 [Tribolium castaneum] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query180
FB|FBgn0034792736 CG3499 [Drosophila melanogaste 0.544 0.133 0.809 2.6e-40
WB|WBGene00010842723 ymel-1 [Caenorhabditis elegans 0.538 0.134 0.586 1.7e-27
ZFIN|ZDB-GENE-091113-41729 yme1l1a "YME1-like 1a" [Danio 0.544 0.134 0.561 5.1e-25
UNIPROTKB|J9NRR9694 YME1L1 "Uncharacterized protei 0.544 0.141 0.523 5.9e-25
MGI|MGI:1351651715 Yme1l1 "YME1-like 1 (S. cerevi 0.544 0.137 0.523 6.3e-25
UNIPROTKB|G3V886715 Yme1l1 "YME1-like 1 (S. cerevi 0.544 0.137 0.523 6.3e-25
UNIPROTKB|F1PRV6748 YME1L1 "Uncharacterized protei 0.544 0.131 0.523 6.9e-25
UNIPROTKB|F1RVK1768 YME1L1 "Uncharacterized protei 0.544 0.127 0.523 7.3e-25
UNIPROTKB|Q96TA2773 YME1L1 "ATP-dependent zinc met 0.544 0.126 0.523 7.4e-25
ZFIN|ZDB-GENE-070410-25722 yme1l1b "YME1-like 1b" [Danio 0.544 0.135 0.533 1.3e-24
FB|FBgn0034792 CG3499 [Drosophila melanogaster (taxid:7227)] Back     alignment and assigned GO terms
 Score = 435 (158.2 bits), Expect = 2.6e-40, P = 2.6e-40
 Identities = 85/105 (80%), Positives = 95/105 (90%)

Query:     2 ITAYHEGGHAVVAFFTKDSHPLHKVTHPLHKVTIIPRGVSLGHTAYIPEKERYHVTKSQL 61
             ITAYHEGGHA+VAF+TK+SHPLHKVT       I+PRG SLGHTAYIPEKERYHVTK+QL
Sbjct:   555 ITAYHEGGHAIVAFYTKESHPLHKVT-------IMPRGPSLGHTAYIPEKERYHVTKAQL 607

Query:    62 MAMMDTMMGGRAAEELVFGAEKVTSGASSDLVQATSIATHMVREF 106
             +AMMDTMMGGRAAEELVFG +K+TSGASSDL QATSIATHMVR++
Sbjct:   608 LAMMDTMMGGRAAEELVFGTDKITSGASSDLKQATSIATHMVRDW 652
GO:0004176 "ATP-dependent peptidase activity" evidence=ISS
GO:0005743 "mitochondrial inner membrane" evidence=ISS
GO:0004222 "metalloendopeptidase activity" evidence=IEA
GO:0030163 "protein catabolic process" evidence=IEA
GO:0005524 "ATP binding" evidence=IEA
GO:0006508 "proteolysis" evidence=IEA
WB|WBGene00010842 ymel-1 [Caenorhabditis elegans (taxid:6239)] Back     alignment and assigned GO terms
ZFIN|ZDB-GENE-091113-41 yme1l1a "YME1-like 1a" [Danio rerio (taxid:7955)] Back     alignment and assigned GO terms
UNIPROTKB|J9NRR9 YME1L1 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)] Back     alignment and assigned GO terms
MGI|MGI:1351651 Yme1l1 "YME1-like 1 (S. cerevisiae)" [Mus musculus (taxid:10090)] Back     alignment and assigned GO terms
UNIPROTKB|G3V886 Yme1l1 "YME1-like 1 (S. cerevisiae)" [Rattus norvegicus (taxid:10116)] Back     alignment and assigned GO terms
UNIPROTKB|F1PRV6 YME1L1 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)] Back     alignment and assigned GO terms
UNIPROTKB|F1RVK1 YME1L1 "Uncharacterized protein" [Sus scrofa (taxid:9823)] Back     alignment and assigned GO terms
UNIPROTKB|Q96TA2 YME1L1 "ATP-dependent zinc metalloprotease YME1L1" [Homo sapiens (taxid:9606)] Back     alignment and assigned GO terms
ZFIN|ZDB-GENE-070410-25 yme1l1b "YME1-like 1b" [Danio rerio (taxid:7955)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

ID ?Name ?Annotated EC number ?Identity ?Query coverage ?Hit coverage ?RBH(Q2H) ?RBH(H2Q) ?
Q9FGM0FTSHB_ARATH3, ., 4, ., 2, 4, ., -0.51960.52770.1178yesN/A
Q8LQJ8FTSH5_ORYSJ3, ., 4, ., 2, 4, ., -0.51420.54440.1370yesN/A
Q96TA2YMEL1_HUMAN3, ., 4, ., 2, 4, ., -0.52380.54440.1267yesN/A
Q925S8YMEL1_RAT3, ., 4, ., 2, 4, ., -0.51420.54440.1370yesN/A
O88967YMEL1_MOUSE3, ., 4, ., 2, 4, ., -0.52380.54440.1370yesN/A

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query180
pfam01434212 pfam01434, Peptidase_M41, Peptidase family M41 1e-45
TIGR01241495 TIGR01241, FtsH_fam, ATP-dependent metalloprotease 9e-40
COG0465596 COG0465, HflB, ATP-dependent Zn proteases [Posttra 1e-34
pfam01434212 pfam01434, Peptidase_M41, Peptidase family M41 1e-31
CHL00176638 CHL00176, ftsH, cell division protein; Validated 1e-28
TIGR01241495 TIGR01241, FtsH_fam, ATP-dependent metalloprotease 8e-27
COG0465596 COG0465, HflB, ATP-dependent Zn proteases [Posttra 3e-24
PRK10733644 PRK10733, hflB, ATP-dependent metalloprotease; Rev 2e-23
CHL00176 638 CHL00176, ftsH, cell division protein; Validated 1e-21
PRK10733 644 PRK10733, hflB, ATP-dependent metalloprotease; Rev 9e-16
>gnl|CDD|216502 pfam01434, Peptidase_M41, Peptidase family M41 Back     alignment and domain information 
 Score =  148 bits (377), Expect = 1e-45
 Identities = 56/105 (53%), Positives = 75/105 (71%), Gaps = 7/105 (6%)

Query: 2   ITAYHEGGHAVVAFFTKDSHPLHKVTHPLHKVTIIPRGVSLGHTAYIPEKERYHVTKSQL 61
           + AYHE GHA+V      + P+HKVT       IIPRG +LG+T ++PE+++   TKSQL
Sbjct: 30  LVAYHEAGHALVGLLLPGADPVHKVT-------IIPRGQALGYTQFLPEEDKLLYTKSQL 82

Query: 62  MAMMDTMMGGRAAEELVFGAEKVTSGASSDLVQATSIATHMVREF 106
           +A +D  +GGRAAEEL+FG ++VT+GAS+DL QAT IA  MV EF
Sbjct: 83  LARIDVALGGRAAEELIFGDDEVTTGASNDLEQATKIARQMVTEF 127

Length = 212
>gnl|CDD|233327 TIGR01241, FtsH_fam, ATP-dependent metalloprotease FtsH Back     alignment and domain information
>gnl|CDD|223541 COG0465, HflB, ATP-dependent Zn proteases [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>gnl|CDD|216502 pfam01434, Peptidase_M41, Peptidase family M41 Back     alignment and domain information
>gnl|CDD|214386 CHL00176, ftsH, cell division protein; Validated Back     alignment and domain information
>gnl|CDD|233327 TIGR01241, FtsH_fam, ATP-dependent metalloprotease FtsH Back     alignment and domain information
>gnl|CDD|223541 COG0465, HflB, ATP-dependent Zn proteases [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>gnl|CDD|182683 PRK10733, hflB, ATP-dependent metalloprotease; Reviewed Back     alignment and domain information
>gnl|CDD|214386 CHL00176, ftsH, cell division protein; Validated Back     alignment and domain information
>gnl|CDD|182683 PRK10733, hflB, ATP-dependent metalloprotease; Reviewed Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 180
PF01434213 Peptidase_M41: Peptidase family M41 This is family 99.96
KOG0734|consensus752 99.95
PRK10733644 hflB ATP-dependent metalloprotease; Reviewed 99.93
CHL00176638 ftsH cell division protein; Validated 99.93
KOG0734|consensus752 99.92
PF01434213 Peptidase_M41: Peptidase family M41 This is family 99.92
COG0465596 HflB ATP-dependent Zn proteases [Posttranslational 99.91
COG0465596 HflB ATP-dependent Zn proteases [Posttranslational 99.88
CHL00176 638 ftsH cell division protein; Validated 99.88
PRK10733 644 hflB ATP-dependent metalloprotease; Reviewed 99.87
TIGR01241495 FtsH_fam ATP-dependent metalloprotease FtsH. HflB( 99.87
KOG0731|consensus774 99.86
KOG0731|consensus 774 99.85
TIGR01241495 FtsH_fam ATP-dependent metalloprotease FtsH. HflB( 99.77
CHL00206 2281 ycf2 Ycf2; Provisional 99.02
CHL00206 2281 ycf2 Ycf2; Provisional 98.44
cd06163182 S2P-M50_PDZ_RseP-like RseP-like Site-2 proteases ( 96.65
PF13398200 Peptidase_M50B: Peptidase M50B-like 96.64
cd06164227 S2P-M50_SpoIVFB_CBS SpoIVFB Site-2 protease (S2P), 96.38
TIGR00054 420 RIP metalloprotease RseP. A model that detects fra 96.15
cd06161208 S2P-M50_SpoIVFB SpoIVFB Site-2 protease (S2P), a z 96.0
cd05709180 S2P-M50 Site-2 protease (S2P) class of zinc metall 95.75
PRK10779 449 zinc metallopeptidase RseP; Provisional 95.71
cd06160183 S2P-M50_like_2 Uncharacterized homologs of Site-2 95.0
cd06162277 S2P-M50_PDZ_SREBP Sterol regulatory element-bindin 94.64
PF02163192 Peptidase_M50: Peptidase family M50; InterPro: IPR 93.95
cd06158181 S2P-M50_like_1 Uncharacterized homologs of Site-2 93.02
cd06159263 S2P-M50_PDZ_Arch Uncharacterized Archaeal homologs 91.54
PF04298222 Zn_peptidase_2: Putative neutral zinc metallopepti 86.01
cd04279156 ZnMc_MMP_like_1 Zinc-dependent metalloprotease; MM 85.61
cd04268165 ZnMc_MMP_like Zinc-dependent metalloprotease, MMP_ 82.55
>PF01434 Peptidase_M41: Peptidase family M41 This is family M41 in the peptidase classification Back     alignment and domain information 
Probab=99.96  E-value=1.2e-29  Score=202.83  Aligned_cols=104  Identities=47%  Similarity=0.738  Sum_probs=92.1

Q ss_pred             CeehhhHHHHHHHHhHhCCCCCCcccCCCceeEEEeeCCCCceEEEeecCccccccCHHHHHHHHHHHhchhhhhhhhhC
Q psy14374          1 MITAYHEGGHAVVAFFTKDSHPLHKVTHPLHKVTIIPRGVSLGHTAYIPEKERYHVTKSQLMAMMDTMMGGRAAEELVFG   80 (180)
Q Consensus         1 ~~~A~HEaGhav~a~~~~~~~~~~~~~~~v~~vsi~~~g~~~G~~~~~~~~~~~~~t~~~l~~~i~v~LaGraaE~v~~g   80 (180)
                      |++|||||||||+++++++..|+       .++||+|||+++||+.+.|.+++...|+++|+++|+++||||+||+++||
T Consensus        29 ~~~A~HEAGhAvva~~l~~~~~v-------~~vsi~prg~~~G~~~~~~~~~~~~~t~~~l~~~i~v~LaGraAEe~~~g  101 (213)
T PF01434_consen   29 RRIAYHEAGHAVVAYLLPPADPV-------SKVSIVPRGSALGFTQFTPDEDRYIRTRSYLEDRICVLLAGRAAEELFFG  101 (213)
T ss_dssp             HHHHHHHHHHHHHHHHSSS---E-------EEEESSTTCCCCHCCEECHHTT-SS-BHHHHHHHHHHHHHHHHHHHHHHS
T ss_pred             HHHHHHHHHHHHHHHHhcccccE-------EEEEEecCCCcceeEEeccchhcccccHHHHHhhHHHHHHHHHHHHhhcC
Confidence            46899999999999999987676       99999999999999999999887789999999999999999999999999


Q ss_pred             CcccccCcchHHHHHhhhhccceeeeeeeee
Q psy14374         81 AEKVTSGASSDLVQATSIATHMVREFVVTII  111 (180)
Q Consensus        81 ~~~~s~g~~~dl~~A~~~A~~~v~~~g~si~  111 (180)
                      .++.++|+++|+.+|+.+|.+||..|||+..
T Consensus       102 ~~~~stGa~~DL~~At~iA~~mv~~~Gm~~~  132 (213)
T PF01434_consen  102 EDNVSTGASSDLQQATEIARKMVASYGMGDS  132 (213)
T ss_dssp             CCS-BGGGHHHHHHHHHHHHHHHHTST-TTT
T ss_pred             cceecccchhHHHHHHHHHHHHHHHhCCCCC
Confidence            8889999999999999999999999999863

; InterPro: IPR000642 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Metalloproteases are the most diverse of the four main types of protease, with more than 50 families identified to date. In these enzymes, a divalent cation, usually zinc, activates the water molecule. The metal ion is held in place by amino acid ligands, usually three in number. The known metal ligands are His, Glu, Asp or Lys and at least one other residue is required for catalysis, which may play an electrophillic role. Of the known metalloproteases, around half contain an HEXXH motif, which has been shown in crystallographic studies to form part of the metal-binding site []. The HEXXH motif is relatively common, but can be more stringently defined for metalloproteases as 'abXHEbbHbc', where 'a' is most often valine or threonine and forms part of the S1' subsite in thermolysin and neprilysin, 'b' is an uncharged residue, and 'c' a hydrophobic residue. Proline is never found in this site, possibly because it would break the helical structure adopted by this motif in metalloproteases []. This group of metallopeptidases belong to MEROPS peptidase family M41 (FtsH endopeptidase family, clan MA(E)). The predicted active site residues for members of this family and thermolysin, the type example for clan MA, occur in the motif HEXXH. The peptidase M41 family belong to a larger family of zinc metalloproteases. This family includes the cell division protein FtsH, and the yeast mitochondrial respiratory chain complexes assembly protein, which is a putative ATP-dependent protease required for assembly of the mitochondrial respiratory chain and ATPase complexes. FtsH is an integral membrane protein, which seems to act as an ATP-dependent zinc metallopeptidase that binds one zinc ion.; GO: 0004222 metalloendopeptidase activity, 0005524 ATP binding, 0006508 proteolysis; PDB: 4EIW_C 2DHR_E 1IY1_A 1IY2_A 1IY0_A 1IXZ_A 2CE7_F 2CEA_F 3KDS_E 2QZ4_A ....
>KOG0734|consensus Back     alignment and domain information
>PRK10733 hflB ATP-dependent metalloprotease; Reviewed Back     alignment and domain information
>CHL00176 ftsH cell division protein; Validated Back     alignment and domain information
>KOG0734|consensus Back     alignment and domain information
>PF01434 Peptidase_M41: Peptidase family M41 This is family M41 in the peptidase classification Back     alignment and domain information
>COG0465 HflB ATP-dependent Zn proteases [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>COG0465 HflB ATP-dependent Zn proteases [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>CHL00176 ftsH cell division protein; Validated Back     alignment and domain information
>PRK10733 hflB ATP-dependent metalloprotease; Reviewed Back     alignment and domain information
>TIGR01241 FtsH_fam ATP-dependent metalloprotease FtsH Back     alignment and domain information
>KOG0731|consensus Back     alignment and domain information
>KOG0731|consensus Back     alignment and domain information
>TIGR01241 FtsH_fam ATP-dependent metalloprotease FtsH Back     alignment and domain information
>CHL00206 ycf2 Ycf2; Provisional Back     alignment and domain information
>CHL00206 ycf2 Ycf2; Provisional Back     alignment and domain information
>cd06163 S2P-M50_PDZ_RseP-like RseP-like Site-2 proteases (S2P), zinc metalloproteases (MEROPS family M50A), cleave transmembrane domains of substrate proteins, regulating intramembrane proteolysis (RIP) of diverse signal transduction mechanisms Back     alignment and domain information
>PF13398 Peptidase_M50B: Peptidase M50B-like Back     alignment and domain information
>cd06164 S2P-M50_SpoIVFB_CBS SpoIVFB Site-2 protease (S2P), a zinc metalloprotease (MEROPS family M50B), regulates intramembrane proteolysis (RIP), and is involved in the pro-sigmaK pathway of bacterial spore formation Back     alignment and domain information
>TIGR00054 RIP metalloprotease RseP Back     alignment and domain information
>cd06161 S2P-M50_SpoIVFB SpoIVFB Site-2 protease (S2P), a zinc metalloprotease (MEROPS family M50B), regulates intramembrane proteolysis (RIP), and is involved in the pro-sigmaK pathway of bacterial spore formation Back     alignment and domain information
>cd05709 S2P-M50 Site-2 protease (S2P) class of zinc metalloproteases (MEROPS family M50) cleaves transmembrane domains of substrate proteins, regulating intramembrane proteolysis (RIP) of diverse signal transduction mechanisms Back     alignment and domain information
>PRK10779 zinc metallopeptidase RseP; Provisional Back     alignment and domain information
>cd06160 S2P-M50_like_2 Uncharacterized homologs of Site-2 protease (S2P), zinc metalloproteases (MEROPS family M50) which cleave transmembrane domains of substrate proteins, regulating intramembrane proteolysis (RIP) of diverse signal transduction mechanisms Back     alignment and domain information
>cd06162 S2P-M50_PDZ_SREBP Sterol regulatory element-binding protein (SREBP) Site-2 protease (S2P), a zinc metalloprotease (MEROPS family M50A), regulates intramembrane proteolysis (RIP) of SREBP and is part of a signal transduction mechanism involved in sterol and lipid metabolism Back     alignment and domain information
>PF02163 Peptidase_M50: Peptidase family M50; InterPro: IPR008915 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families Back     alignment and domain information
>cd06158 S2P-M50_like_1 Uncharacterized homologs of Site-2 protease (S2P), zinc metalloproteases (MEROPS family M50) which cleave transmembrane domains of substrate proteins, regulating intramembrane proteolysis (RIP) of diverse signal transduction mechanisms Back     alignment and domain information
>cd06159 S2P-M50_PDZ_Arch Uncharacterized Archaeal homologs of Site-2 protease (S2P), zinc metalloproteases (MEROPS family M50) which cleave transmembrane domains of substrate proteins, regulating intramembrane proteolysis (RIP) of diverse signal transduction mechanisms Back     alignment and domain information
>PF04298 Zn_peptidase_2: Putative neutral zinc metallopeptidase; InterPro: IPR007395 Members of this family of bacterial proteins are described as hypothetical proteins or zinc-dependent proteases Back     alignment and domain information
>cd04279 ZnMc_MMP_like_1 Zinc-dependent metalloprotease; MMP_like sub-family 1 Back     alignment and domain information
>cd04268 ZnMc_MMP_like Zinc-dependent metalloprotease, MMP_like subfamily Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query180
3kds_E465 Apo-ftsh Crystal Structure Length = 465 2e-20
3kds_E465 Apo-ftsh Crystal Structure Length = 465 1e-14
2ce7_A476 Edta Treated Length = 476 2e-20
2ce7_A 476 Edta Treated Length = 476 2e-14
2di4_A238 Crystal Structure Of The Ftsh Protease Domain Lengt 6e-16
2di4_A 238 Crystal Structure Of The Ftsh Protease Domain Lengt 7e-12
4eiw_A508 Whole Cytosolic Region Of Atp-Dependent Metalloprot 9e-15
4eiw_A 508 Whole Cytosolic Region Of Atp-Dependent Metalloprot 8e-09
2dhr_A499 Whole Cytosolic Region Of Atp-Dependent Metalloprot 9e-15
2dhr_A 499 Whole Cytosolic Region Of Atp-Dependent Metalloprot 8e-09
>pdb|3KDS|E Chain E, Apo-ftsh Crystal Structure Length = 465 Back     alignment and structure 
Iteration: 1

 Score = 95.1 bits (235), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 47/103 (45%), Positives = 74/103 (71%), Gaps = 10/103 (9%)
Query: 2   ITAYHEGGHAVVAFFTKDSHPLHKVTHPLHKVTIIPRGV-SLGHTAYIPEKERYHVTKSQ 60
           I AYHE GHAVV+    +  P+H+++       IIPRG  +LG+T ++PE+++Y V++++
Sbjct: 274 IIAYHEAGHAVVSTVVPNGEPVHRIS-------IIPRGYKALGYTLHLPEEDKYLVSRNE 326
Query: 61  LMAMMDTMMGGRAAEELVFGAEKVTSGASSDLVQATSIATHMV 103
           L+  +  ++GGRAAEE+VFG   VTSGA++D+ +AT IA +MV
Sbjct: 327 LLDKLTALLGGRAAEEVVFG--DVTSGAANDIERATEIARNMV 367
>pdb|3KDS|E Chain E, Apo-ftsh Crystal Structure Length = 465 Back     alignment and structure
>pdb|2CE7|A Chain A, Edta Treated Length = 476 Back     alignment and structure
>pdb|2CE7|A Chain A, Edta Treated Length = 476 Back     alignment and structure
>pdb|2DI4|A Chain A, Crystal Structure Of The Ftsh Protease Domain Length = 238 Back     alignment and structure
>pdb|2DI4|A Chain A, Crystal Structure Of The Ftsh Protease Domain Length = 238 Back     alignment and structure
>pdb|4EIW|A Chain A, Whole Cytosolic Region Of Atp-Dependent Metalloprotease Ftsh (G399l) Length = 508 Back     alignment and structure
>pdb|4EIW|A Chain A, Whole Cytosolic Region Of Atp-Dependent Metalloprotease Ftsh (G399l) Length = 508 Back     alignment and structure
>pdb|2DHR|A Chain A, Whole Cytosolic Region Of Atp-Dependent Metalloprotease Ftsh (G399l) Length = 499 Back     alignment and structure
>pdb|2DHR|A Chain A, Whole Cytosolic Region Of Atp-Dependent Metalloprotease Ftsh (G399l) Length = 499 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query180
2di4_A238 Zinc protease, cell division protein FTSH homolog; 3e-44
2di4_A 238 Zinc protease, cell division protein FTSH homolog; 3e-30
2ce7_A476 Cell division protein FTSH; metalloprotease; HET: 1e-38
2ce7_A 476 Cell division protein FTSH; metalloprotease; HET: 2e-25
2dhr_A499 FTSH; AAA+ protein, hexameric Zn metalloprotease, 3e-37
2dhr_A 499 FTSH; AAA+ protein, hexameric Zn metalloprotease, 3e-24
>2di4_A Zinc protease, cell division protein FTSH homolog; metalloproteinase, hexamer-ring, hydrolase; 2.79A {Aquifex aeolicus} SCOP: a.269.1.1 Length = 238 Back     alignment and structure
 Score =  145 bits (368), Expect = 3e-44
 Identities = 39/105 (37%), Positives = 63/105 (60%), Gaps = 7/105 (6%)

Query: 2   ITAYHEGGHAVVAFFTKDSHPLHKVTHPLHKVTIIPRGVSLGHTAYIPEKERYHVTKSQL 61
             A HE GHA++   + D          +HK++IIPRG++LG T  +P ++++   K  L
Sbjct: 18  KIAIHEAGHALMGLVSDD-------DDKVHKISIIPRGMALGVTQQLPIEDKHIYDKKDL 70

Query: 62  MAMMDTMMGGRAAEELVFGAEKVTSGASSDLVQATSIATHMVREF 106
              +  ++GGRAAEE+ FG + +T+GA +DL +AT +A  MV  +
Sbjct: 71  YNKILVLLGGRAAEEVFFGKDGITTGAENDLQRATDLAYRMVSMW 115
>2di4_A Zinc protease, cell division protein FTSH homolog; metalloproteinase, hexamer-ring, hydrolase; 2.79A {Aquifex aeolicus} SCOP: a.269.1.1 Length = 238 Back     alignment and structure
>2ce7_A Cell division protein FTSH; metalloprotease; HET: ADP; 2.44A {Thermotoga maritima} SCOP: a.269.1.1 c.37.1.20 PDB: 2cea_A* 3kds_E* Length = 476 Back     alignment and structure
>2ce7_A Cell division protein FTSH; metalloprotease; HET: ADP; 2.44A {Thermotoga maritima} SCOP: a.269.1.1 c.37.1.20 PDB: 2cea_A* 3kds_E* Length = 476 Back     alignment and structure
>2dhr_A FTSH; AAA+ protein, hexameric Zn metalloprotease, hydrolase; HET: ADP; 3.90A {Thermus thermophilus} Length = 499 Back     alignment and structure
>2dhr_A FTSH; AAA+ protein, hexameric Zn metalloprotease, hydrolase; HET: ADP; 3.90A {Thermus thermophilus} Length = 499 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query180
2di4_A238 Zinc protease, cell division protein FTSH homolog; 99.97
2di4_A 238 Zinc protease, cell division protein FTSH homolog; 99.94
2ce7_A476 Cell division protein FTSH; metalloprotease; HET: 99.9
2ce7_A 476 Cell division protein FTSH; metalloprotease; HET: 99.88
2dhr_A499 FTSH; AAA+ protein, hexameric Zn metalloprotease, 99.86
2dhr_A 499 FTSH; AAA+ protein, hexameric Zn metalloprotease, 99.82
3b4r_A224 Putative zinc metalloprotease MJ0392; intramembran 95.42
1hy7_A173 Stromelysin-1, MMP-3; mixed alpha beta structure, 81.31
>2di4_A Zinc protease, cell division protein FTSH homolog; metalloproteinase, hexamer-ring, hydrolase; 2.79A {Aquifex aeolicus} SCOP: a.269.1.1 Back     alignment and structure
Probab=99.97  E-value=4.7e-33  Score=224.05  Aligned_cols=104  Identities=38%  Similarity=0.621  Sum_probs=83.1

Q ss_pred             CeehhhHHHHHHHHhHhCCCCCCcccCCCceeEEEeeCCCCceEEEeecCccccccCHHHHHHHHHHHhchhhhhhhhhC
Q psy14374          1 MITAYHEGGHAVVAFFTKDSHPLHKVTHPLHKVTIIPRGVSLGHTAYIPEKERYHVTKSQLMAMMDTMMGGRAAEELVFG   80 (180)
Q Consensus         1 ~~~A~HEaGhav~a~~~~~~~~~~~~~~~v~~vsi~~~g~~~G~~~~~~~~~~~~~t~~~l~~~i~v~LaGraaE~v~~g   80 (180)
                      |++||||||||||++++++.+|+       .+|||+|||+++|||.+.|.++++..|+++|+++|+++||||+||+++||
T Consensus        17 ~~vAyHEAGHAlva~~l~~~~pV-------~KVTIiPRG~alG~t~~~P~ed~~~~tk~~l~~~i~v~LgGRaAEelifG   89 (238)
T 2di4_A           17 EKIAIHEAGHALMGLVSDDDDKV-------HKISIIPRGMALGVTQQLPIEDKHIYDKKDLYNKILVLLGGRAAEEVFFG   89 (238)
T ss_dssp             HHHHHHHHHHHHHHHHCSSCCCC-------CCEECC----------------CCCCBHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHcCCCCce-------eEEEEeecCCcceEEEeCCcccccccCHHHHHHHHHHHHhHHHHHHHHhC
Confidence            47899999999999999998887       99999999999999999999889999999999999999999999999996


Q ss_pred             CcccccCcchHHHHHhhhhccceeeeeeeee
Q psy14374         81 AEKVTSGASSDLVQATSIATHMVREFVVTII  111 (180)
Q Consensus        81 ~~~~s~g~~~dl~~A~~~A~~~v~~~g~si~  111 (180)
                      ..++++|+++|+.+||.+|..||..||||..
T Consensus        90 ~g~vttGA~~Dl~~AT~iAr~MV~~~GMs~~  120 (238)
T 2di4_A           90 KDGITTGAENDLQRATDLAYRMVSMWGMSDK  120 (238)
T ss_dssp             HHHCCGGGHHHHHHHHHHHHHHHHTSCCCTT
T ss_pred             CCCcccChHhHHHHHHHHHHHHHHHhCCCCC
Confidence            5578999999999999999999999999975
>2di4_A Zinc protease, cell division protein FTSH homolog; metalloproteinase, hexamer-ring, hydrolase; 2.79A {Aquifex aeolicus} SCOP: a.269.1.1 Back     alignment and structure
>2ce7_A Cell division protein FTSH; metalloprotease; HET: ADP; 2.44A {Thermotoga maritima} SCOP: a.269.1.1 c.37.1.20 PDB: 2cea_A* 3kds_E* Back     alignment and structure
>2ce7_A Cell division protein FTSH; metalloprotease; HET: ADP; 2.44A {Thermotoga maritima} SCOP: a.269.1.1 c.37.1.20 PDB: 2cea_A* 3kds_E* Back     alignment and structure
>2dhr_A FTSH; AAA+ protein, hexameric Zn metalloprotease, hydrolase; HET: ADP; 3.90A {Thermus thermophilus} Back     alignment and structure
>2dhr_A FTSH; AAA+ protein, hexameric Zn metalloprotease, hydrolase; HET: ADP; 3.90A {Thermus thermophilus} Back     alignment and structure
>3b4r_A Putative zinc metalloprotease MJ0392; intramembrane protease, CBS domain, hydrolase, metal-binding, transmembrane; 3.30A {Methanocaldococcus jannaschii} Back     alignment and structure
>1hy7_A Stromelysin-1, MMP-3; mixed alpha beta structure, zinc protease, inhibited, hydrol; HET: MBS; 1.50A {Homo sapiens} SCOP: d.92.1.11 PDB: 1biw_A* 1bm6_A* 1bqo_A* 1b3d_A* 1cqr_A 1d5j_A* 1d7x_A* 1d8f_A* 1d8m_A* 1g05_A* 1g49_A* 1c3i_A* 1sln_A* 1uea_A 2srt_A* 1ums_A* 1umt_A* 2d1o_A* 3oho_A* 1ciz_A* ... Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 180
d2di4a1202 a.269.1.1 (A:406-607) Cell division protein FtsH, 8e-24
d2di4a1202 a.269.1.1 (A:406-607) Cell division protein FtsH, 1e-12
d2ce7a1193 a.269.1.1 (A:411-603) Cell division protein FtsH, 9e-22
d2ce7a1193 a.269.1.1 (A:411-603) Cell division protein FtsH, 4e-11
>d2di4a1 a.269.1.1 (A:406-607) Cell division protein FtsH, C-terminal domain {Aquifex aeolicus [TaxId: 63363]} Length = 202 Back     information, alignment and structure

class: All alpha proteins
fold: FtsH protease domain-like
superfamily: FtsH protease domain-like
family: FtsH protease domain-like
domain: Cell division protein FtsH, C-terminal domain
species: Aquifex aeolicus [TaxId: 63363]

 Score = 90.6 bits (224), Expect = 8e-24
 Identities = 39/105 (37%), Positives = 63/105 (60%), Gaps = 7/105 (6%)

Query: 2   ITAYHEGGHAVVAFFTKDSHPLHKVTHPLHKVTIIPRGVSLGHTAYIPEKERYHVTKSQL 61
             A HE GHA++   + D          +HK++IIPRG++LG T  +P ++++   K  L
Sbjct: 9   KIAIHEAGHALMGLVSDD-------DDKVHKISIIPRGMALGVTQQLPIEDKHIYDKKDL 61

Query: 62  MAMMDTMMGGRAAEELVFGAEKVTSGASSDLVQATSIATHMVREF 106
              +  ++GGRAAEE+ FG + +T+GA +DL +AT +A  MV  +
Sbjct: 62  YNKILVLLGGRAAEEVFFGKDGITTGAENDLQRATDLAYRMVSMW 106
>d2di4a1 a.269.1.1 (A:406-607) Cell division protein FtsH, C-terminal domain {Aquifex aeolicus [TaxId: 63363]} Length = 202 Back     information, alignment and structure
>d2ce7a1 a.269.1.1 (A:411-603) Cell division protein FtsH, C-terminal domain {Thermotoga maritima [TaxId: 2336]} Length = 193 Back     information, alignment and structure
>d2ce7a1 a.269.1.1 (A:411-603) Cell division protein FtsH, C-terminal domain {Thermotoga maritima [TaxId: 2336]} Length = 193 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query180
d2ce7a1193 Cell division protein FtsH, C-terminal domain {The 99.95
d2di4a1202 Cell division protein FtsH, C-terminal domain {Aqu 99.94
d2ce7a1193 Cell division protein FtsH, C-terminal domain {The 99.85
d2di4a1202 Cell division protein FtsH, C-terminal domain {Aqu 99.82
d1kapp2246 Metalloprotease {Pseudomonas aeruginosa [TaxId: 28 80.53
>d2ce7a1 a.269.1.1 (A:411-603) Cell division protein FtsH, C-terminal domain {Thermotoga maritima [TaxId: 2336]} Back     information, alignment and structure
class: All alpha proteins
fold: FtsH protease domain-like
superfamily: FtsH protease domain-like
family: FtsH protease domain-like
domain: Cell division protein FtsH, C-terminal domain
species: Thermotoga maritima [TaxId: 2336]

Probab=99.95  E-value=1.3e-28  Score=190.75  Aligned_cols=102  Identities=46%  Similarity=0.799  Sum_probs=80.5

Q ss_pred             CeehhhHHHHHHHHhHhCCCCCCcccCCCceeEEEeeCCC-CceEEEeecCccccccCHHHHHHHHHHHhchhhhhhhhh
Q psy14374          1 MITAYHEGGHAVVAFFTKDSHPLHKVTHPLHKVTIIPRGV-SLGHTAYIPEKERYHVTKSQLMAMMDTMMGGRAAEELVF   79 (180)
Q Consensus         1 ~~~A~HEaGhav~a~~~~~~~~~~~~~~~v~~vsi~~~g~-~~G~~~~~~~~~~~~~t~~~l~~~i~v~LaGraaE~v~~   79 (180)
                      |++|||||||||+++++++.+++       .+|||+||+. .+|++.+.|++++...|+++++++|+++||||+||+++|
T Consensus         8 ~~vA~HEAGHAlva~~l~~~~~i-------~~vsI~~r~~~~~g~~~~~~~~~~~~~t~~~l~~~i~v~LaGraAE~~~~   80 (193)
T d2ce7a1           8 RIIAYHEAGHAVVSTVVPNGEPV-------HRISIIPRGYKALGYTLHLPEEDKYLVSRNELLDKLTALLGGRAAEEVVF   80 (193)
T ss_dssp             HHHHHHHHHHHHHHHHSTTCCCC-------CEEECC-----------------CCSCBHHHHHHHHHHHTHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHcCCCCce-------eEEEEecCccCCCceeecCCccccccCcHHHHHHHHHHHHHHHHHHHHHh
Confidence            47899999999999999987776       9999999964 789999999888888999999999999999999999999


Q ss_pred             CCcccccCcchHHHHHhhhhccceeeeeeeee
Q psy14374         80 GAEKVTSGASSDLVQATSIATHMVREFVVTII  111 (180)
Q Consensus        80 g~~~~s~g~~~dl~~A~~~A~~~v~~~g~si~  111 (180)
                      |  +.++|+++|+.+|+.+|.+|+..|||+..
T Consensus        81 g--~~s~Ga~~Dl~~At~lA~~~v~~~Gm~~~  110 (193)
T d2ce7a1          81 G--DVTSGAANDIERATEIARNMVCQLGMSEE  110 (193)
T ss_dssp             S--SCCGGGHHHHHHHHHHHHHHHHTSCCCTT
T ss_pred             C--CCCCCccCcHHHHHHHHHHHHHhhCcCCC
Confidence            9  46999999999999999999999999864
>d2di4a1 a.269.1.1 (A:406-607) Cell division protein FtsH, C-terminal domain {Aquifex aeolicus [TaxId: 63363]} Back     information, alignment and structure
>d2ce7a1 a.269.1.1 (A:411-603) Cell division protein FtsH, C-terminal domain {Thermotoga maritima [TaxId: 2336]} Back     information, alignment and structure
>d2di4a1 a.269.1.1 (A:406-607) Cell division protein FtsH, C-terminal domain {Aquifex aeolicus [TaxId: 63363]} Back     information, alignment and structure
>d1kapp2 d.92.1.6 (P:1-246) Metalloprotease {Pseudomonas aeruginosa [TaxId: 287]} Back     information, alignment and structure