Psyllid ID: psy14377

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-------540-------550-------560-------570-------580-------590-------600-------610-------620-------630-------640-------650-------660-------670-------680-------690-------700-------710-------720-------730-------740-------750-------760-------770-------780-------790-------800-------810-------820-------830-------840-------85
Protein Sequence
LLASLRITKTRLSDNTILFQGAGEASLGIADLCVMAMQKEGTSEQDARDKIWMVDSKGLIVKDRPEGGVTGHKVHYAKKHAPVKNLADVVKTVKPSILIEELKGLSQRDFLSSWLNRGPCLNCWGKRDFEQDKQGISYSIHASLGIADLCVMAMQKEGTSEQDARDKIWMVDSKGLIVKDRPEGGVTGHKVHYAKKHAPVKNLADVVKTVKPSILIGESCVNDVAGLLASLRITKTRLSDNTILFQGAGEASLGIADLCVMAMQKEGTSEQDARDKIWMVDSKGLIVKDRPEGGVTGHKVHYAKKHAPVKNLADVVKTGMAFSIEERQALGIHGLLPAAVKSQDEQLHLCKLNVDRYEDPLNKYIYLQALAVKTDIRAIVVTDGERILGLGDLGAYGMGIPVGKLSLYTALAGIKPHQCLPITLDVGTNWRRAAAIPQVFTADILKDMAAFNKRPIIFALSNPTSKAECTAEQAYVNTDGRGVFASGSPFDPVTYKGKTFTPGQEYVVELMPIVYTPTVGLACQKYGLIFRRPRGLFISIHDKGHISEVLRNWPETDIRAIVVTDGERILGLGDLGAYGMGIPVGKLSLYTALAGIKPHQCLPITLDVGTNTQQLLDDPLYIGLRQRRTTGQAYDDFIEEFMQAVVARYGQHVLIQFEDFANHSAFRFLDTYRNRYCVFNDDIQGTASVAVAGLLASLRITKTRLSDNTILFQGAGEGTASVAVAGLLASLRITKTRLSDNTILFQGAGEGTASVAIAGLLASLRITKTRLSDNTILFQGSGEGTASVAVAGVLASLRITKTRLSDNTILFQGAGEDRNERLFYRLLSEYVVELMPIVYTPTVGLACQ
Secondary Structure (PSIPRED)
cccccccccccccccEEEEEcccHHHHHHHHHHHHHHHHccccHHHHHccEEEEcccccccccccccccccccccccccccccccHHHHHHHccccEEEHHHHccccccEEEccccccccccccHHHHHHccccEEEEEcccccccHHHHHHHHHHccccHHHHHccEEEEEcccEEEEccccccccHHHHHHcccccccccHHHHHHHHcccccccccccHHHHHHHHHHHHHcccccccEEEEEcccHHHHHHHHHHHHHHHHccccHHHHHccEEEEccccEEEEccccccccccccccccccccccccccHHHccccccccHHccEEEEEccccccccHHHHHHHHHccccccccccccccccccccccccccEEEEccccccccccccccccccccccccHHHHHHHcccccccccccccccccccccccccccccHHHHHHHHHcccccEEEEcccccccccccHHHHHHcccccEEEEEcccccccccccEEEccccccHHHHccccccccHHHHHHHcccccccccEEEEcccccccHHHHHHccccccccEEEEEcccccccccccccccccccHHHHHHHHHHccccccccccEEEEcccccHHccccccccccccccccHHHHHHHHHHHHHHHHHHHcccEEEEEccccccHHHHHHHHHcccccEEcccccHHHHHHHHHHHHHHHHccccccccEEEEEccccHHHHHHHHHHHHHHHHHHHccccccccHHHHHccEEEEcccccccccccccccccccHHHcccccccccccccccHHHHHHcccccccccccccccccccccHHHHHHHHHHHHHHHcccccccccccccc
Secondary Structure Prediction (SSPRO)
HHHHHHHHccccccccEEEEcccHHHHHHHHHHHHHHHcccccHHHHHHcEEEEEccEEcEcccccccccHHHHHHHcccccHHHHHHHHHHccccEEEEccccccHHHHHHHHHcccccccccHHHHHHcccccHEHHHHHHHHHHHHHHHHHHcccccHHHHHHcEEEEEccEEcEccccccccHHHHHHHHcccccHHHHHHHHHHccccEHHHHHHHHHHHHHHHHHHHHcccHHHccEEEEcccHHHHHHHHHHHHHHHcccccHHHHHHcEEEEEccEEcEcccccccccHccccHHcccccHHHHHHHHHcHHHccHHHHHHcccccccccccccHHHHHHHHHHHHHccccHHHHHHHHHHHHcccHccEEEEEccccEcccEccHHHHHHHHHHHHHHHHHHHcccHHHEEEEEEEcccccHHcccccccccHHHHHHHHHHccccEEEEccccHHHccccHHHHHHHcccccEEEEccccccEEEccEEEccEHHcHHHHHHHHcccHHHHHHHcHHHHccccccEEEEHHHcccHHHHHcccccccccEEEEEccccEcccEccHHHHHHHHHHHHHHHHHHHcccHHHEEEEEEEcccccHHHHcccccccccccccccHHHHHHHHHHHHHHHHHHccccEEEEccccHHHHHHHHHHHcccccEEEccccHHHHHHHHHHHHHHHHHccccccccEEEEcccHHHHHHHHHHHHHHHHHHccccccccEEEEcccHHHHHHHHHHHHHHHHHccccccccEEEEEccccccccHHHHHHHHHHHHHHHHHccccEEEHHHHHcccHHHHHHHHHHcHHHHHHHHcccHHHHHHH
Coil and Loop (DISEMBL)
LLASLRitktrlsdntilfqgageasLGIADLCVMAMQkegtseqdardkiwmvdskglivkdrpeggvtghkvhyakkhapvkNLADVVKTVKPSILIEELKGLSQRDFLSswlnrgpclncwgkrdfeqdkqgisYSIHASLGIADLCVMAMQkegtseqdardkiwmvdskglivkdrpeggvtghkvhyakkhapvkNLADVVKTVKPSILIGESCVNDVAGLLASLRITktrlsdntilfqgageasLGIADLCVMAMQkegtseqdardkiwmvdskglivkdrpeggvtghkvhyakkhapvkNLADVVKTGMAFSIEERQALGihgllpaavksqdEQLHLCKLNVDRYEDPLNKYIYLQALAVKTDIRAIVVtdgerilglgdlgaygmgipvGKLSLYTALagikphqclpitldvgtnwrraaaipqvFTADILKDMAAFnkrpiifalsnptskaectaeqayvntdgrgvfasgspfdpvtykgktftpgqeYVVELMPIVYTPTVGLACQkyglifrrprglfisihdkGHISEVlrnwpetdirAIVVTdgerilglgdlgaygmgipvGKLSLYTALagikphqclpitldvgtntqqllddplyiglrqrrttgqAYDDFIEEFMQAVVARYGQHVLIQFEDFANHSAFRFLDTYRNRycvfnddiqGTASVAVAGLLASLRITktrlsdntilfqgageGTASVAVAGLLASLRITktrlsdntilfqgageGTASVAIAGLLASLRITktrlsdntilfqgsgegTASVAVAGVLASLRITktrlsdntilfqgagedrNERLFYRLLSEYVVELMPivytptvglacq
Flexible Loop (DISEMBL)
llaslritktrlsdntilfqgagEASLGIADLCVMAMQKEgtseqdardkiwMVDSKGLIVKDRPEGGVTGHKvhyakkhapvknladVVKTVKPSILIEELKGLSQRDFLSSWLNRGPCLNCWGKRDFEQDKQGISYSIHASLGIADLCVMAMQKEGtseqdardkiwMVDSKGLIVKDRPEGGVTGHkvhyakkhapvknlADVVKTVKPSILIGESCVNDVAGLLASLRITKTRLSDNTILFQGAGEASLGIADLCVMAMQKEgtseqdardkiwMVDSKGLIVKDRPEGGVTGhkvhyakkhapvknLADVVKTGMAFSIEERQALGIHGLLPAAVKSQDEQLHLCKLNVDRYEDPLNKYIYLQALAVKTDIRAIVVTDGERILGLGDLGAYGMGIPVGKLSLYTALAGIKPHQCLPITLDVGTNWRRAAAIPQVFTADILKDMAAFNKRPIIFALSNPTSKAECTAEQAYVNTDGRGVFASGSPFDPVTYKGKTFTPGQEYVVELMPIVYTPTVGLACQKYGLIFRRPRGLFISIHDKghisevlrnwpeTDIRAIVVTDGERILGLGDLGAYGMGIPVGKLSLYTALAGIKPHQCLPITLDVGTNTQQLLDDPLYIGLRQRRTTGQAYDDFIEEFMQAVVARYGQHVLIQFEDFANHSAFRFLDTYRNRYCVFNDDIQGTASVAVAGLLASLRITKTRLSDNTILFQGAGEGTASVAVAGLLASLRITKTRLSDNTILFQGAGEGTASVAIAGLLASLRITKTRLSDNTIlfqgsgegtaSVAVAGVLASLritktrlsdntilfqgagedrnERLFYRLLSEYVVELMPIVYTPTVGLACQ
Low Complexity Region (SEG)
LLASLRITKTRLSDNTILFQGAGEASLGIADLCVMAMQKEGTSEQDARDKIWMVDSKGLIVKDRPEGGVTGHKVHYAKKHAPVKNLADVVKTVKPSILIEELKGLSQRDFLSSWLNRGPCLNCWGKRDFEQDKQGISYSIHASLGIADLCVMAMQKEGTSEQDARDKIWMVDSKGLIVKDRPEGGVTGHKVHYAKKHAPVKNLADVVKTVKPSILIGESCVNDVAGLLASLRITKTRLSDNTILFQGAGEASLGIADLCVMAMQKEGTSEQDARDKIWMVDSKGLIVKDRPEGGVTGHKVHYAKKHAPVKNLADVVKTGMAFSIEERQALGIHGLLPAAVKSQDEQLHLCKLNVDRYEDPLNKYIYLQALAVKTDIRAIVVTDGERILGLGDLGAYGMGIPVGKLSLYTALAGIKPHQCLPITLDVGTNWRRAAAIPQVFTADILKDMAAFNKRPIIFALSNPTSKAECTAEQAYVNTDGRGVFASGSPFDPVTYKGKTFTPGQEYVVELMPIVYTPTVGLACQKYGLIFRRPRGLFISIHDKGHISEVLRNWPETDIRAIVVTDGERILGLGDLGAYGMGIPVGKLSLYTALAGIKPHQCLPITLDVGTNTQQLLDDPLYIGLRQRRTTGQAYDDFIEEFMQAVVARYGQHVLIQFEDFANHSAFRFLDTYRNRYCVFNDDIQGTasvavagllaslRITKTRLSDNTILFQGAGEGTasvavagllaslRITKTRLSDNTILFQGAGEGTASVAIAGLLASLRITKTRLSDNTILFQGSGEGTasvavagvlaslRITKTRLSDNTILFQGAGEDRNERLFYRLLSEYVVELMPIVYTPTVGLACQ
Disordered region (IsUnstruct)
**********RLSDNTILFQGAGEASLGIADLCVMAM***********DKIWMVDSKGLIVKDRPEGGVTGHKVHYAKKHAPVKNLADVVKTVKPSILIEELKGLSQRDFLSSWLNRGPCLNCWGKRDFEQDKQGISYSIHASLGIADLCVMAMQ**********DKIWMVDSKGLIVKDRPEGGVTGHKVHYAKKHAPVKNLADVVKTVKPSILIGESCVNDVAGLLASLRITKTRLSDNTILFQGAGEASLGIADLCVMAM***********DKIWMVDSKGLIVKDRPEGGVTGHKVHYAKKHAPVKNLADVVKTGMAFSIEERQALGIHGLLPAAVKSQDEQLHLCKLNVDRYEDPLNKYIYLQALAVKTDIRAIVVTDGERILGLGDLGAYGMGIPVGKLSLYTALAGIKPHQCLPITLDVGTNWRRAAAIPQVFTADILKDMAAFNKRPIIFALSNPTSKAECTAEQAYVNTDGRGVFASGSPFDPVTYKGKTFTPGQEYVVELMPIVYTPTVGLACQKYGLIFRRPRGLFISIHDKGHISEVLRNWPETDIRAIVVTDGERILGLGDLGAYGMGIPVGKLSLYTALAGIKPHQCLPITLDVGTNTQQLLDDPLYIGLRQRRTTGQAYDDFIEEFMQAVVARYGQHVLIQFEDFANHSAFRFLDTYRNRYCVFNDDIQGTASVAVAGLLASLRITKTRLSDNTILFQGAGEGTASVAVAGLLASLRITKTRLSDNTILFQGAGEGTASVAIAGLLASLRITKTRLSDNTILFQGSGEGTASVAVAGVLASLRITKTRLSDNTILFQGAGEDRNERLFYRLLSEYVVELMPIVYTPTVGLA**
Disordered Region (DISOPRED)
LLAS***TKTRLSDNTILFQGAGEASLGIADLCVMAMQKEGTSEQDARDKIWMVDSKGLIVKDRPEGGVTGHKVHYAKKHAPVKNLADVVKTVKPSILIEELKGLSQRDFLSSWLNRGPCLNCWGKRDFEQDKQGISYSIHASLGIADLCVMAMQKEGTSEQDARDKIWMVDSKGLIVKDRPEGGVTGHKVHYAKKHAPVKNLADVVKTVKPSILIGESCVNDVAGLLASLRITKTRLSDNTILFQGAGEASLGIADLCVMAMQKEGTSEQDARDKIWMVDSKGLIVKDRPEGGVTGHKVHYAKKHAPVKNLADVVKTGMAFSIEERQALGIHGLLPAAVKSQDEQLHLCKLNVDRYEDPLNKYIYLQALAVKTDIRAIVVTDGERILGLGDLGAYGMGIPVGKLSLYTALAGIKPHQCLPITLDVGTNWRRAAAIPQVFTADILKDMAAFNKRPIIFALSNPTSKAECTAEQAYVNTDGRGVFASGSPFDPVTYKGKTFTPGQEYVVELMPIVYTPTVGLACQKYGLIFRRPRGLFISIHDKGHISEVLRNWPETDIRAIVVTDGERILGLGDLGAYGMGIPVGKLSLYTALAGIKPHQCLPITLDVGTNTQQLLDDPLYIGLRQRRTTGQAYDDFIEEFMQAVVARYGQHVLIQFEDFANHSAFRFLDTYRNRYCVFNDDIQGTASVAVAGLLASLRITKTRLSDNTILFQGAGEGTASVAVAGLLASLRITKTR***NTILFQGAGEGTASVAIAGLLASLRITKTRLSDNTILFQGSGEGTASVAVAGVLASLRITKTRLSDNTILFQGAGEDRNERLFYRLLSEYVVELMPIVYTPTVGLACQ
Disordered Region (DISEMBL)
LLASLRITKTRLSDNTILFQGAGEASLGIADLCVMAMQKEGTSEQDARDKIWMVDSKGLIVKDRPEGGVTGHKVHYAKKHAPVKNLADVVKTVKPSILIEELKGLSQRDFLSSWLNRGPCLNCWGKRDFEQDKQGISYSIHASLGIADLCVMAMQKEGTSEQDARDKIWMVDSKGLIVKDRPEGGVTGHKVHYAKKHAPVKNLADVVKTVKPSILIGESCVNDVAGLLASLRITKTRLSDNTILFQGAGEASLGIADLCVMAMQKEGTSEQDARDKIWMVDSKGLIVKDRPEGGVTGHKVHYAKKHAPVKNLADVVKTGMAFSIEERQALGIHGLLPAAVKSQDEQLHLCKLNVDRYEDPLNKYIYLQALAVKTDIRAIVVTDGERILGLGDLGAYGMGIPVGKLSLYTALAGIKPHQCLPITLDVGTNWRRAAAIPQVFTADILKDMAAFNKRPIIFALSNPTSKAECTAEQAYVNTDGRGVFASGSPFDPVTYKGKTFTPGQEYVVELMPIVYTPTVGLACQKYGLIFRRPRGLFISIHDKGHISEVLRNWPETDIRAIVVTDGERILGLGDLGAYGMGIPVGKLSLYTALAGIKPHQCLPITLDVGTNTQQLLDDPLYIGLRQRRTTGQAYDDFIEEFMQAVVARYGQHVLIQFEDFANHSAFRFLDTYRNRYCVFNDDIQGTASVAVAGLLASLRITKTRLSDNTILFQGAGEGTASVAVAGLLASLRITKTRLSDNTILFQGAGEGTASVAIAGLLASLRITKTRLSDNTILFQGSGEGTASVAVAGVLASLRITKTRLSDNTILFQGAGEDRNERLFYRLLSEYVVELMPIVYTPTVGLACQ
Disordered Region (DISPRO)
LLASLRITKTRLSDNTILFQGAGEASLGIADLCVMAMQKEGTSEQDARDKIWMVDSKGLIVKDRPEGGVTGHKVHYAKKHAPVKNLADVVKTVKPSILIEELKGLSQRDFLSSWLNRGPCLNCWGKRDFEQDKQGISYSIHASLGIADLCVMAMQKEGTSEQDARDKIWMVDSKGLIVKDRPEGGVTGHKVHYAKKHAPVKNLADVVKTVKPSILIGESCVNDVAGLLASLRITKTRLSDNTILFQGAGEASLGIADLCVMAMQKEGTSEQDARDKIWMVDSKGLIVKDRPEGGVTGHKVHYAKKHAPVKNLADVVKTGMAFSIEERQALGIHGLLPAAVKSQDEQLHLCKLNVDRYEDPLNKYIYLQALAVKTDIRAIVVTDGERILGLGDLGAYGMGIPVGKLSLYTALAGIKPHQCLPITLDVGTNWRRAAAIPQVFTADILKDMAAFNKRPIIFALSNPTSKAECTAEQAYVNTDGRGVFASGSPFDPVTYKGKTFTPGQEYVVELMPIVYTPTVGLACQKYGLIFRRPRGLFISIHDKGHISEVLRNWPETDIRAIVVTDGERILGLGDLGAYGMGIPVGKLSLYTALAGIKPHQCLPITLDVGTNTQQLLDDPLYIGLRQRRTTGQAYDDFIEEFMQAVVARYGQHVLIQFEDFANHSAFRFLDTYRNRYCVFNDDIQGTASVAVAGLLASLRITKTRLSDNTILFQGAGEGTASVAVAGLLASLRITKTRLSDNTILFQGAGEGTASVAIAGLLASLRITKTRLSDNTILFQGSGEGTASVAVAGVLASLRITKTRLSDNTILFQGAGEDRNERLFYRLLSEYVVELMPIVYTPTVGLACQ
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
LLASLRITKTRLSDNTILFQGAGEASLGIADLCVMAMQKEGTSEQDARDKIWMVDSKGLIVKDRPEGGVTGHKVHYAKKHAPVKNLADVVKTVKPSILIEELKGLSQRDFLSSWLNRGPCLNCWGKRDFEQDKQGISYSIHASLGIADLCVMAMQKEGTSEQDARDKIWMVDSKGLIVKDRPEGGVTGHKVHYAKKHAPVKNLADVVKTVKPSILIGESCVNDVAGLLASLRITKTRLSDNTILFQGAGEASLGIADLCVMAMQKEGTSEQDARDKIWMVDSKGLIVKDRPEGGVTGHKVHYAKKHAPVKNLADVVKTGMAFSIEERQALGIHGLLPAAVKSQDEQLHLCKLNVDRYEDPLNKYIYLQALAVKTDIRAIVVTDGERILGLGDLGAYGMGIPVGKLSLYTALAGIKPHQCLPITLDVGTNWRRAAAIPQVFTADILKDMAAFNKRPIIFALSNPTSKAECTAEQAYVNTDGRGVFASGSPFDPVTYKGKTFTPGQEYVVELMPIVYTPTVGLACQKYGLIFRRPRGLFISIHDKGHISEVLRNWPETDIRAIVVTDGERILGLGDLGAYGMGIPVGKLSLYTALAGIKPHQCLPITLDVGTNTQQLLDDPLYIGLRQRRTTGQAYDDFIEEFMQAVVARYGQHVLIQFEDFANHSAFRFLDTYRNRYCVFNDDIQGTASVAVAGLLASLRITKTRLSDNTILFQGAGEGTASVAVAGLLASLRITKTRLSDNTILFQGAGEGTASVAIAGLLASLRITKTRLSDNTILFQGSGEGTASVAVAGVLASLRITKTRLSDNTILFQGAGEDRNERLFYRLLSEYVVELMPIVYTPTVGLACQ
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	848	2.2.26 [Sep-21-2011]
P28227	557	NADP-dependent malic enzy	N/A	N/A	0.255	0.389	0.735	1e-96
P40927	557	NADP-dependent malic enzy	N/A	N/A	0.259	0.394	0.729	2e-96
P48163	572	NADP-dependent malic enzy	yes	N/A	0.253	0.375	0.714	7e-93
P06801	572	NADP-dependent malic enzy	yes	N/A	0.253	0.375	0.718	1e-92
P13697	572	NADP-dependent malic enzy	yes	N/A	0.253	0.375	0.718	3e-92
Q8BMF3	604	NADP-dependent malic enzy	no	N/A	0.259	0.364	0.698	4e-92
Q16798	604	NADP-dependent malic enzy	no	N/A	0.259	0.364	0.693	1e-91
Q29558	557	NADP-dependent malic enzy	no	N/A	0.253	0.385	0.700	3e-91
P12628	589	NADP-dependent malic enzy	N/A	N/A	0.260	0.375	0.663	1e-84
P37223	585	NADP-dependent malic enzy	N/A	N/A	0.272	0.394	0.639	2e-84

>sp|P28227|MAOX_ANAPL NADP-dependent malic enzyme OS=Anas platyrhynchos GN=ME1 PE=1 SV=1

 Score =  354 bits (909), Expect = 1e-96,   Method: Compositional matrix adjust.
 Identities = 161/219 (73%), Positives = 191/219 (87%), Gaps = 2/219 (0%)

Query: 510 LMPIVYTPTVGLACQKYGLIFRRPRGLFISIHDKGHISEVLRNWPETDIRAIVVTDGERI 569
            MPIVYTPTVGLACQ+YGL FRRPRGLFI+IHD+GHI+ +L++WPE+ I+AIVVTDGERI
Sbjct: 86  FMPIVYTPTVGLACQQYGLAFRRPRGLFITIHDRGHIATMLKSWPESVIKAIVVTDGERI 145

Query: 570 LGLGDLGAYGMGIPVGKLSLYTALAGIKPHQCLPITLDVGTNTQQLLDDPLYIGLRQRRT 629
           LGLGDLG YGMGIPVGKL+LYTA  G+KPH+CLP+ LDVGT+ + LL DPLYIGLR +R 
Sbjct: 146 LGLGDLGCYGMGIPVGKLALYTACGGVKPHECLPVMLDVGTDNEALLKDPLYIGLRHKRI 205

Query: 630 TGQAYDDFIEEFMQAVVARYGQHVLIQFEDFANHSAFRFLDTYRNRYCVFNDDIQGTASV 689
            GQAYDD ++EFM+AV +RYG + LIQFEDFAN +AFR L  YRN+YC FNDDIQGTASV
Sbjct: 206 RGQAYDDLLDEFMEAVTSRYGMNCLIQFEDFANANAFRLLHKYRNKYCTFNDDIQGTASV 265

Query: 690 AVAGLLASLRITKTRLSDNTILFQGAGEGTASVAVAGLL 728
           AVAGLLA+LRITK RLSD+T+LFQGAGE  A++ +A L+
Sbjct: 266 AVAGLLAALRITKNRLSDHTVLFQGAGE--AALGIANLI 302

Anas platyrhynchos (taxid: 8839)
EC: 1EC: .EC: 1EC: .EC: 1EC: .EC: 4EC: 0

>sp|P40927|MAOX_COLLI NADP-dependent malic enzyme OS=Columba livia GN=ME1 PE=1 SV=1

 Score =  354 bits (909), Expect = 2e-96,   Method: Compositional matrix adjust.
 Identities = 162/222 (72%), Positives = 191/222 (86%), Gaps = 2/222 (0%)

Query: 507 VVELMPIVYTPTVGLACQKYGLIFRRPRGLFISIHDKGHISEVLRNWPETDIRAIVVTDG 566
           +   MPIVYTPTVGLACQ YGL FRRPRGLFI+IHD+GHI+ +L++WPE+ I+AIVVTDG
Sbjct: 83  IERFMPIVYTPTVGLACQHYGLAFRRPRGLFITIHDRGHIATMLQSWPESVIKAIVVTDG 142

Query: 567 ERILGLGDLGAYGMGIPVGKLSLYTALAGIKPHQCLPITLDVGTNTQQLLDDPLYIGLRQ 626
           ERILGLGDLG YGMGIPVGKL+LYTA  G+KPHQCLP+ LDVGT+ + LL DPLYIGLR 
Sbjct: 143 ERILGLGDLGCYGMGIPVGKLALYTACGGVKPHQCLPVMLDVGTDNETLLKDPLYIGLRH 202

Query: 627 RRTTGQAYDDFIEEFMQAVVARYGQHVLIQFEDFANHSAFRFLDTYRNRYCVFNDDIQGT 686
           +R  GQAYDD ++EFM+AV +RYG + LIQFEDFAN +AFR L  YRN+YC FNDDIQGT
Sbjct: 203 KRIRGQAYDDLLDEFMEAVTSRYGMNCLIQFEDFANANAFRLLHKYRNKYCTFNDDIQGT 262

Query: 687 ASVAVAGLLASLRITKTRLSDNTILFQGAGEGTASVAVAGLL 728
           ASVAVAGLLA+LRITK RLSD+T+LFQGAGE  A++ +A L+
Sbjct: 263 ASVAVAGLLAALRITKNRLSDHTVLFQGAGE--AALGIANLI 302

Columba livia (taxid: 8932)

EC: 1

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: 4

EC: 0

>sp|P48163|MAOX_HUMAN NADP-dependent malic enzyme OS=Homo sapiens GN=ME1 PE=1 SV=1

 Score =  342 bits (877), Expect = 7e-93,   Method: Compositional matrix adjust.
 Identities = 155/217 (71%), Positives = 182/217 (83%)

Query: 507 VVELMPIVYTPTVGLACQKYGLIFRRPRGLFISIHDKGHISEVLRNWPETDIRAIVVTDG 566
           + + MPIVYTPTVGLACQ+Y L+FR+PRGLFI+IHD+GHI+ VL  WPE  I+AIVVTDG
Sbjct: 94  IEKFMPIVYTPTVGLACQQYSLVFRKPRGLFITIHDRGHIASVLNAWPEDVIKAIVVTDG 153

Query: 567 ERILGLGDLGAYGMGIPVGKLSLYTALAGIKPHQCLPITLDVGTNTQQLLDDPLYIGLRQ 626
           ERILGLGDLG  GMGIPVGKL+LYTA  G+ P +CLP+ LDVGT  ++LL DPLYIGLRQ
Sbjct: 154 ERILGLGDLGCNGMGIPVGKLALYTACGGMNPQECLPVILDVGTENEELLKDPLYIGLRQ 213

Query: 627 RRTTGQAYDDFIEEFMQAVVARYGQHVLIQFEDFANHSAFRFLDTYRNRYCVFNDDIQGT 686
           RR  G  YDDF++EFM+AV ++YG + LIQFEDFAN +AFR L+ YRN+YC FNDDIQGT
Sbjct: 214 RRVRGSEYDDFLDEFMEAVSSKYGMNCLIQFEDFANVNAFRLLNKYRNQYCTFNDDIQGT 273

Query: 687 ASVAVAGLLASLRITKTRLSDNTILFQGAGEGTASVA 723
           ASVAVAGLLA+LRITK +LSD TILFQGAGE    +A
Sbjct: 274 ASVAVAGLLAALRITKNKLSDQTILFQGAGEAALGIA 310

Homo sapiens (taxid: 9606)

EC: 1

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: 4

EC: 0

>sp|P06801|MAOX_MOUSE NADP-dependent malic enzyme OS=Mus musculus GN=Me1 PE=1 SV=2

 Score =  341 bits (875), Expect = 1e-92,   Method: Compositional matrix adjust.
 Identities = 156/217 (71%), Positives = 179/217 (82%)

Query: 507 VVELMPIVYTPTVGLACQKYGLIFRRPRGLFISIHDKGHISEVLRNWPETDIRAIVVTDG 566
           V + MPIVYTPTVGLACQ+Y L FR+PRGLFISIHDKGHI+ VL  WPE  ++AIVVTDG
Sbjct: 94  VEKFMPIVYTPTVGLACQQYSLAFRKPRGLFISIHDKGHIASVLNAWPEDVVKAIVVTDG 153

Query: 567 ERILGLGDLGAYGMGIPVGKLSLYTALAGIKPHQCLPITLDVGTNTQQLLDDPLYIGLRQ 626
           ERILGLGDLG  GMGIPVGKL+LYTA  G+ P QCLPITLDVGT  ++LL DPLYIGLR 
Sbjct: 154 ERILGLGDLGCNGMGIPVGKLALYTACGGVNPQQCLPITLDVGTENEELLKDPLYIGLRH 213

Query: 627 RRTTGQAYDDFIEEFMQAVVARYGQHVLIQFEDFANHSAFRFLDTYRNRYCVFNDDIQGT 686
           RR  G  YD F++EFM+A  ++YG + LIQFEDFAN +AFR L+ YRN+YC FNDDIQGT
Sbjct: 214 RRVRGPEYDAFLDEFMEAASSKYGMNCLIQFEDFANRNAFRLLNKYRNKYCTFNDDIQGT 273

Query: 687 ASVAVAGLLASLRITKTRLSDNTILFQGAGEGTASVA 723
           ASVAVAGLLA+LRITK +LSD T+LFQGAGE    +A
Sbjct: 274 ASVAVAGLLAALRITKNKLSDQTVLFQGAGEAALGIA 310

Mus musculus (taxid: 10090)

EC: 1

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: 4

EC: 0

>sp|P13697|MAOX_RAT NADP-dependent malic enzyme OS=Rattus norvegicus GN=Me1 PE=1 SV=2

 Score =  340 bits (872), Expect = 3e-92,   Method: Compositional matrix adjust.
 Identities = 156/217 (71%), Positives = 179/217 (82%)

Query: 507 VVELMPIVYTPTVGLACQKYGLIFRRPRGLFISIHDKGHISEVLRNWPETDIRAIVVTDG 566
           V + MPIVYTPTVGLACQ+Y L FR+PRGLFISIHDKGHI+ VL  WPE  ++AIVVTDG
Sbjct: 94  VEKFMPIVYTPTVGLACQQYSLAFRKPRGLFISIHDKGHIASVLNAWPEDVVKAIVVTDG 153

Query: 567 ERILGLGDLGAYGMGIPVGKLSLYTALAGIKPHQCLPITLDVGTNTQQLLDDPLYIGLRQ 626
           ERILGLGDLG  GMGIPVGKL+LYTA  G+ P QCLPITLDVGT  ++LL DPLYIGLR 
Sbjct: 154 ERILGLGDLGCNGMGIPVGKLALYTACGGVNPQQCLPITLDVGTENEELLKDPLYIGLRH 213

Query: 627 RRTTGQAYDDFIEEFMQAVVARYGQHVLIQFEDFANHSAFRFLDTYRNRYCVFNDDIQGT 686
           RR  G  YD F++EFM+A  ++YG + LIQFEDFAN +AFR L+ YRN+YC FNDDIQGT
Sbjct: 214 RRVRGPEYDAFLDEFMEAASSKYGMNCLIQFEDFANLNAFRLLNKYRNKYCTFNDDIQGT 273

Query: 687 ASVAVAGLLASLRITKTRLSDNTILFQGAGEGTASVA 723
           ASVAVAGLLA+LRITK +LSD T+LFQGAGE    +A
Sbjct: 274 ASVAVAGLLAALRITKNKLSDQTVLFQGAGEAALGIA 310

Rattus norvegicus (taxid: 10116)

EC: 1

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: 4

EC: 0

>sp|Q8BMF3|MAON_MOUSE NADP-dependent malic enzyme, mitochondrial OS=Mus musculus GN=Me3 PE=1 SV=2

 Score =  340 bits (871), Expect = 4e-92,   Method: Compositional matrix adjust.
 Identities = 155/222 (69%), Positives = 188/222 (84%), Gaps = 2/222 (0%)

Query: 507 VVELMPIVYTPTVGLACQKYGLIFRRPRGLFISIHDKGHISEVLRNWPETDIRAIVVTDG 566
           V + MPIVYTPTVGLACQ YGL FRRPRGLFI+IHDKGHI+ +L +WPE +I+A+VVTDG
Sbjct: 129 VEKFMPIVYTPTVGLACQHYGLTFRRPRGLFITIHDKGHIATMLNSWPEDNIKAVVVTDG 188

Query: 567 ERILGLGDLGAYGMGIPVGKLSLYTALAGIKPHQCLPITLDVGTNTQQLLDDPLYIGLRQ 626
           ERILGLGDLG YGMGIPVGKL+LYTA  G+ P QCLP+ LDVGTN ++LL DPLYIGL+ 
Sbjct: 189 ERILGLGDLGCYGMGIPVGKLALYTACGGVNPQQCLPVLLDVGTNNEELLRDPLYIGLKH 248

Query: 627 RRTTGQAYDDFIEEFMQAVVARYGQHVLIQFEDFANHSAFRFLDTYRNRYCVFNDDIQGT 686
           +R  G+ YDD ++EFMQAV  ++G + LIQFEDFAN +AFR L+ YRN+YC+FNDDIQGT
Sbjct: 249 QRVRGEEYDDLLDEFMQAVTDKFGINCLIQFEDFANANAFRLLNKYRNKYCMFNDDIQGT 308

Query: 687 ASVAVAGLLASLRITKTRLSDNTILFQGAGEGTASVAVAGLL 728
           ASVAVAG+LA+LRITK RLS++  +FQGAGE  A++ +A LL
Sbjct: 309 ASVAVAGILAALRITKNRLSNHVFVFQGAGE--AAMGIAHLL 348

Mus musculus (taxid: 10090)

EC: 1

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: 4

EC: 0

>sp|Q16798|MAON_HUMAN NADP-dependent malic enzyme, mitochondrial OS=Homo sapiens GN=ME3 PE=2 SV=2

 Score =  338 bits (866), Expect = 1e-91,   Method: Compositional matrix adjust.
 Identities = 154/222 (69%), Positives = 189/222 (85%), Gaps = 2/222 (0%)

Query: 507 VVELMPIVYTPTVGLACQKYGLIFRRPRGLFISIHDKGHISEVLRNWPETDIRAIVVTDG 566
           V + MPIVYTPTVGLACQ YGL FRRPRGLFI+IHDKGH++ +L +WPE +I+A+VVTDG
Sbjct: 129 VEKFMPIVYTPTVGLACQHYGLTFRRPRGLFITIHDKGHLATMLNSWPEDNIKAVVVTDG 188

Query: 567 ERILGLGDLGAYGMGIPVGKLSLYTALAGIKPHQCLPITLDVGTNTQQLLDDPLYIGLRQ 626
           ERILGLGDLG YGMGIPVGKL+LYTA  G+ P QCLP+ LDVGTN ++LL DPLYIGL+ 
Sbjct: 189 ERILGLGDLGCYGMGIPVGKLALYTACGGVNPQQCLPVLLDVGTNNEELLRDPLYIGLKH 248

Query: 627 RRTTGQAYDDFIEEFMQAVVARYGQHVLIQFEDFANHSAFRFLDTYRNRYCVFNDDIQGT 686
           +R  G+AYDD ++EFMQAV  ++G + LIQFEDFAN +AFR L+ YRN+YC+FNDDIQGT
Sbjct: 249 QRVHGKAYDDLLDEFMQAVTDKFGINCLIQFEDFANANAFRLLNKYRNKYCMFNDDIQGT 308

Query: 687 ASVAVAGLLASLRITKTRLSDNTILFQGAGEGTASVAVAGLL 728
           ASVAVAG+LA+LRITK +LS++  +FQGAGE  A++ +A LL
Sbjct: 309 ASVAVAGILAALRITKNKLSNHVFVFQGAGE--AAMGIAHLL 348

Homo sapiens (taxid: 9606)

EC: 1

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: 4

EC: 0

>sp|Q29558|MAOX_PIG NADP-dependent malic enzyme (Fragment) OS=Sus scrofa GN=ME1 PE=2 SV=1

 Score =  337 bits (863), Expect = 3e-91,   Method: Compositional matrix adjust.
 Identities = 152/217 (70%), Positives = 180/217 (82%)

Query: 507 VVELMPIVYTPTVGLACQKYGLIFRRPRGLFISIHDKGHISEVLRNWPETDIRAIVVTDG 566
           + + MPIVYTPTVGLACQ+Y L FR+PRGLFISIHD+GH++ VL  WPE  I+A+VVTDG
Sbjct: 80  IEKFMPIVYTPTVGLACQQYSLAFRKPRGLFISIHDRGHVASVLNAWPEDVIKAVVVTDG 139

Query: 567 ERILGLGDLGAYGMGIPVGKLSLYTALAGIKPHQCLPITLDVGTNTQQLLDDPLYIGLRQ 626
           ERILGLGDLG  GMGIPVGKL+LYTA  G+ P +CLP+ LDVGT  ++LL DPLYIGLRQ
Sbjct: 140 ERILGLGDLGCNGMGIPVGKLALYTACGGVNPQECLPVILDVGTENEELLKDPLYIGLRQ 199

Query: 627 RRTTGQAYDDFIEEFMQAVVARYGQHVLIQFEDFANHSAFRFLDTYRNRYCVFNDDIQGT 686
           RR  G  YDDF++EFM+AV ++YG + LIQFEDFAN +AFR L  Y+N+YC FNDDIQGT
Sbjct: 200 RRVRGPEYDDFLDEFMEAVSSKYGMNCLIQFEDFANINAFRLLKKYQNQYCTFNDDIQGT 259

Query: 687 ASVAVAGLLASLRITKTRLSDNTILFQGAGEGTASVA 723
           ASVAVAG+LA+LRITK +LSD TILFQGAGE    +A
Sbjct: 260 ASVAVAGILAALRITKNKLSDQTILFQGAGEAALGIA 296

Sus scrofa (taxid: 9823)

EC: 1

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: 4

EC: 0

>sp|P12628|MAOX_PHAVU NADP-dependent malic enzyme OS=Phaseolus vulgaris GN=ME1 PE=2 SV=1

 Score =  315 bits (807), Expect = 1e-84,   Method: Compositional matrix adjust.
 Identities = 148/223 (66%), Positives = 179/223 (80%), Gaps = 2/223 (0%)

Query: 507 VVELMPIVYTPTVGLACQKYGLIFRRPRGLFISIHDKGHISEVLRNWPETDIRAIVVTDG 566
           V EL+P+VYTPTVG ACQKYG IFRRP+GL+IS+ +KG I EVL+NWPE  I+ IVVTDG
Sbjct: 129 VAELLPVVYTPTVGEACQKYGSIFRRPQGLYISLKEKGKILEVLKNWPEKSIQVIVVTDG 188

Query: 567 ERILGLGDLGAYGMGIPVGKLSLYTALAGIKPHQCLPITLDVGTNTQQLLDDPLYIGLRQ 626
           ERILGLGDLG  GMGIPVGKLSLYTAL G++P  CLP+T+DVGTN ++LL+D  YIGLRQ
Sbjct: 189 ERILGLGDLGCQGMGIPVGKLSLYTALGGVRPSSCLPVTIDVGTNNEKLLNDEFYIGLRQ 248

Query: 627 RRTTGQAYDDFIEEFMQAVVARYGQHVLIQFEDFANHSAFRFLDTYRNRYCVFNDDIQGT 686
           RR TGQ Y  F++EFM+AV   YG+ VL+QFEDFANH+AF  L+ Y + + VFNDDIQGT
Sbjct: 249 RRATGQEYATFLDEFMRAVKQNYGEKVLVQFEDFANHNAFDLLEKYSSSHLVFNDDIQGT 308

Query: 687 ASVAVAGLLASLRITKTRLSDNTILFQGAGEGTASVAVAGLLA 729
           ASV +AGLLASL++    L+D+T LF GAGE  A   +A L+A
Sbjct: 309 ASVVLAGLLASLKLVGGTLADHTFLFLGAGE--AGTGIAELIA 349

Phaseolus vulgaris (taxid: 3885)

EC: 1

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: 4

EC: 0

>sp|P37223|MAOX_MESCR NADP-dependent malic enzyme OS=Mesembryanthemum crystallinum GN=MOD1 PE=2 SV=1

 Score =  314 bits (804), Expect = 2e-84,   Method: Compositional matrix adjust.
 Identities = 149/233 (63%), Positives = 181/233 (77%), Gaps = 2/233 (0%)

Query: 505 EYVVELMPIVYTPTVGLACQKYGLIFRRPRGLFISIHDKGHISEVLRNWPETDIRAIVVT 564
           ++V EL+P+VYTPTVG  CQKYG IFRRP+GLFIS+ DKG I E+LRNWPE  I+ IVVT
Sbjct: 123 DHVEELLPLVYTPTVGEGCQKYGSIFRRPQGLFISLKDKGRILELLRNWPEKKIQVIVVT 182

Query: 565 DGERILGLGDLGAYGMGIPVGKLSLYTALAGIKPHQCLPITLDVGTNTQQLLDDPLYIGL 624
           DGERILGLGDLG  GMGIPVGKLSLY+AL G+ P  CLPITLDVGTN Q+LLDD  YIGL
Sbjct: 183 DGERILGLGDLGCQGMGIPVGKLSLYSALGGVCPSACLPITLDVGTNNQKLLDDEFYIGL 242

Query: 625 RQRRTTGQAYDDFIEEFMQAVVARYGQHVLIQFEDFANHSAFRFLDTYRNRYCVFNDDIQ 684
           +Q+R TG+ Y +F++EFM AV   YG+ +L+QFEDFANH+AF  L+ YR  + VFNDDIQ
Sbjct: 243 KQKRATGEEYAEFVQEFMSAVKQNYGEKILVQFEDFANHNAFELLEKYRTTHLVFNDDIQ 302

Query: 685 GTASVAVAGLLASLRITKTRLSDNTILFQGAGEGTASVAVAGLLASLRITKTR 737
           GTASV +AGL+ASL++    L+D+  LF GAGE  A   +A L+A     KT+
Sbjct: 303 GTASVVLAGLIASLKLLGGTLADHKFLFLGAGE--AGTGIAELIALEMSKKTK 353

Plays a role in CAM (crassulacean acid metabolism) photosynthesis.

Mesembryanthemum crystallinum (taxid: 3544)

EC: 1

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: 4

EC: 0

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	848
443419066	623	NADP-dependent malic enzyme-like protein	0.275	0.375	0.793	1e-108
321468728	557	hypothetical protein DAPPUDRAFT_304467 [	0.261	0.398	0.803	1e-104
193676231	573	PREDICTED: NADP-dependent malic enzyme-l	0.265	0.392	0.771	1e-104
380024737	631	PREDICTED: LOW QUALITY PROTEIN: NADP-dep	0.262	0.353	0.747	1e-101
328778238	637	PREDICTED: NADP-dependent malic enzyme i	0.259	0.345	0.743	1e-101
350405161	606	PREDICTED: NADP-dependent malic enzyme-l	0.261	0.366	0.76	1e-100
340726186	632	PREDICTED: NADP-dependent malic enzyme-l	0.259	0.348	0.762	1e-100
340726184	606	PREDICTED: NADP-dependent malic enzyme-l	0.259	0.363	0.762	1e-100
242011898	1184	NADP-dependent malic enzyme, putative [P	0.262	0.188	0.786	1e-100
91093507	608	PREDICTED: similar to malate dehydrogena	0.252	0.351	0.746	1e-100

>gi|443419066|gb|AGC84405.1| NADP-dependent malic enzyme-like protein [Locusta migratoria]

 Score =  400 bits (1027), Expect = e-108,   Method: Compositional matrix adjust.
 Identities = 188/237 (79%), Positives = 213/237 (89%), Gaps = 3/237 (1%)

Query: 505 EYVVELMPIVYTPTVGLACQKYGLIFRRPRGLFISIHDKGHISEVLRNWPETDIRAIVVT 564
           E V  +MPIVYTPTVG ACQ YGLI+RRPRGLFI+IHDKGH+ E+L+NWPE+D+RAIVVT
Sbjct: 152 ENVQTMMPIVYTPTVGQACQNYGLIYRRPRGLFITIHDKGHVYEILKNWPESDVRAIVVT 211

Query: 565 DGERILGLGDLGAYGMGIPVGKLSLYTALAGIKPHQCLPITLDVGTNTQQLLDDPLYIGL 624
           DGERILGLGDLGAYGMGIPVGKL+LYTALAGIKPHQCLPITLDVGTNTQ+LLDDPLYIGL
Sbjct: 212 DGERILGLGDLGAYGMGIPVGKLALYTALAGIKPHQCLPITLDVGTNTQKLLDDPLYIGL 271

Query: 625 RQRRTTGQAYDDFIEEFMQAVVARYGQHVLIQFEDFANHSAFRFLDTYRNRYCVFNDDIQ 684
           R +R TG+ YDDF+EEFMQAVV RYGQ+ LIQFEDFAN +AFRFL+ YR+RYC FNDDIQ
Sbjct: 272 RHKRITGKEYDDFVEEFMQAVVKRYGQNTLIQFEDFANSNAFRFLEKYRDRYCTFNDDIQ 331

Query: 685 GTASVAVAGLLASLRITKTRLSDNTILFQGAGEGTASVAVAGL-LASLRITKTRLSD 740
           GTASVAVAGLLASLR+TKTRLSD+TILFQGAGE  AS+ +AGL + +++   T L D
Sbjct: 332 GTASVAVAGLLASLRVTKTRLSDHTILFQGAGE--ASLGIAGLCVMAMQKEGTSLQD 386

Source: Locusta migratoria

Species: Locusta migratoria

Genus: Locusta

Family: Acrididae

Order: Orthoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|321468728|gb|EFX79712.1| hypothetical protein DAPPUDRAFT_304467 [Daphnia pulex]

 Score =  386 bits (992), Expect = e-104,   Method: Compositional matrix adjust.
 Identities = 180/224 (80%), Positives = 203/224 (90%), Gaps = 2/224 (0%)

Query: 505 EYVVELMPIVYTPTVGLACQKYGLIFRRPRGLFISIHDKGHISEVLRNWPETDIRAIVVT 564
           E V ++MPIVYTPTVGLACQK+G+I+RRPRGLFISIHDKGHI  +LRNWPE D+RAIVVT
Sbjct: 81  ENVEDMMPIVYTPTVGLACQKFGVIYRRPRGLFISIHDKGHIYSMLRNWPEEDVRAIVVT 140

Query: 565 DGERILGLGDLGAYGMGIPVGKLSLYTALAGIKPHQCLPITLDVGTNTQQLLDDPLYIGL 624
           DGERILGLGDLGAYGMGIPVGKL+LYTALAGIKPHQCLPI LDVGTNTQ+LLDDPLYIGL
Sbjct: 141 DGERILGLGDLGAYGMGIPVGKLALYTALAGIKPHQCLPIVLDVGTNTQELLDDPLYIGL 200

Query: 625 RQRRTTGQAYDDFIEEFMQAVVARYGQHVLIQFEDFANHSAFRFLDTYRNRYCVFNDDIQ 684
           RQ+R TG AYD+ I+EFM AVV RYGQ+ LIQFEDF NH+AFRFL+ YRN+Y  FNDDIQ
Sbjct: 201 RQKRVTGDAYDELIDEFMTAVVHRYGQNTLIQFEDFGNHNAFRFLEKYRNKYLTFNDDIQ 260

Query: 685 GTASVAVAGLLASLRITKTRLSDNTILFQGAGEGTASVAVAGLL 728
           GTASVAVAGLLASLR+TKT+L++NT LFQGAGE  AS+ +A L+
Sbjct: 261 GTASVAVAGLLASLRLTKTKLAENTFLFQGAGE--ASIGIAQLI 302

Source: Daphnia pulex

Species: Daphnia pulex

Genus: Daphnia

Family: Daphniidae

Order: Diplostraca

Class: Branchiopoda

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|193676231|ref|XP_001943996.1| PREDICTED: NADP-dependent malic enzyme-like [Acyrthosiphon pisum]

 Score =  384 bits (987), Expect = e-104,   Method: Compositional matrix adjust.
 Identities = 176/228 (77%), Positives = 197/228 (86%)

Query: 505 EYVVELMPIVYTPTVGLACQKYGLIFRRPRGLFISIHDKGHISEVLRNWPETDIRAIVVT 564
           E V   MP+VYTPTVGLACQKYGLIF++PRGLFISIHD GH+ ++L+NWPE D+RAIVVT
Sbjct: 102 ENVEAFMPLVYTPTVGLACQKYGLIFQKPRGLFISIHDAGHVYDILKNWPEQDVRAIVVT 161

Query: 565 DGERILGLGDLGAYGMGIPVGKLSLYTALAGIKPHQCLPITLDVGTNTQQLLDDPLYIGL 624
           DGERILGLGDLG YGMGIPVGKL+LYTALAGIKPHQCLP+TLD GTNTQ LLDDP Y+G 
Sbjct: 162 DGERILGLGDLGVYGMGIPVGKLALYTALAGIKPHQCLPVTLDCGTNTQLLLDDPDYVGS 221

Query: 625 RQRRTTGQAYDDFIEEFMQAVVARYGQHVLIQFEDFANHSAFRFLDTYRNRYCVFNDDIQ 684
           RQ+R TGQ YDDFI+EFMQA V RYGQ+ LIQFEDF N +AFRFLD YRN+YC FNDDIQ
Sbjct: 222 RQKRVTGQQYDDFIDEFMQAAVKRYGQNCLIQFEDFGNSNAFRFLDKYRNKYCTFNDDIQ 281

Query: 685 GTASVAVAGLLASLRITKTRLSDNTILFQGAGEGTASVAVAGLLASLR 732
           GTASVA+AGL ASLRITKTRLSDN ILFQGAGE    +A   ++A L+
Sbjct: 282 GTASVALAGLFASLRITKTRLSDNVILFQGAGEAALGIAELCVMAMLK 329

Source: Acyrthosiphon pisum

Species: Acyrthosiphon pisum

Genus: Acyrthosiphon

Family: Aphididae

Order: Hemiptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|380024737|ref|XP_003696148.1| PREDICTED: LOW QUALITY PROTEIN: NADP-dependent malic enzyme-like [Apis florea]

 Score =  377 bits (967), Expect = e-101,   Method: Compositional matrix adjust.
 Identities = 169/226 (74%), Positives = 201/226 (88%)

Query: 504 QEYVVELMPIVYTPTVGLACQKYGLIFRRPRGLFISIHDKGHISEVLRNWPETDIRAIVV 563
           ++ V ++MP+VYTPTVGLACQK+GL++RRPRGLFISIHDKG++ ++L NWPE D+RAIVV
Sbjct: 159 EQNVEKMMPLVYTPTVGLACQKFGLVYRRPRGLFISIHDKGYVYDILNNWPEHDVRAIVV 218

Query: 564 TDGERILGLGDLGAYGMGIPVGKLSLYTALAGIKPHQCLPITLDVGTNTQQLLDDPLYIG 623
           TDGERILGLGDLGAYGMGIP+GKLSLYTALAGIKPHQCLPITLDVGTNTQ LLDDPLYIG
Sbjct: 219 TDGERILGLGDLGAYGMGIPIGKLSLYTALAGIKPHQCLPITLDVGTNTQSLLDDPLYIG 278

Query: 624 LRQRRTTGQAYDDFIEEFMQAVVARYGQHVLIQFEDFANHSAFRFLDTYRNRYCVFNDDI 683
            R +R TG+ YDDF++EFMQA++ RYGQ+ LIQFEDF N +AFR L+ YR+ YC FNDDI
Sbjct: 279 HRHKRITGKEYDDFLDEFMQAIIKRYGQNTLIQFEDFGNANAFRLLNKYRDHYCTFNDDI 338

Query: 684 QGTASVAVAGLLASLRITKTRLSDNTILFQGAGEGTASVAVAGLLA 729
           QGTASVAVAGLLASLR+T T+LS+NTI+FQGAGE +  +A   ++A
Sbjct: 339 QGTASVAVAGLLASLRVTNTKLSENTIVFQGAGEASLGIAWLCVMA 384

Source: Apis florea

Species: Apis florea

Genus: Apis

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|328778238|ref|XP_395280.4| PREDICTED: NADP-dependent malic enzyme isoform 1 [Apis mellifera]

 Score =  376 bits (965), Expect = e-101,   Method: Compositional matrix adjust.
 Identities = 168/226 (74%), Positives = 201/226 (88%)

Query: 504 QEYVVELMPIVYTPTVGLACQKYGLIFRRPRGLFISIHDKGHISEVLRNWPETDIRAIVV 563
           ++ V ++MP+VYTPTVGLACQK+GL++RRPRGLFISIHDKG++ ++L NWPE D+RAIVV
Sbjct: 165 EQNVEKMMPLVYTPTVGLACQKFGLVYRRPRGLFISIHDKGYVYDILNNWPEHDVRAIVV 224

Query: 564 TDGERILGLGDLGAYGMGIPVGKLSLYTALAGIKPHQCLPITLDVGTNTQQLLDDPLYIG 623
           TDGERILGLGDLGAYGMGIP+GKLSLYTALAGIKPHQCLPITLDVGTNTQ LLDDPLYIG
Sbjct: 225 TDGERILGLGDLGAYGMGIPIGKLSLYTALAGIKPHQCLPITLDVGTNTQSLLDDPLYIG 284

Query: 624 LRQRRTTGQAYDDFIEEFMQAVVARYGQHVLIQFEDFANHSAFRFLDTYRNRYCVFNDDI 683
            R +R TG+ YDDF++EFM+A++ RYGQ+ LIQFEDF N +AFR L+ YR+ YC FNDDI
Sbjct: 285 HRHKRITGKEYDDFLDEFMEAIIKRYGQNTLIQFEDFGNANAFRLLNKYRDHYCTFNDDI 344

Query: 684 QGTASVAVAGLLASLRITKTRLSDNTILFQGAGEGTASVAVAGLLA 729
           QGTASVAVAGLLASLR+T T+LS+NTI+FQGAGE +  +A   ++A
Sbjct: 345 QGTASVAVAGLLASLRVTNTKLSENTIVFQGAGEASLGIAWLCVMA 390

Source: Apis mellifera

Species: Apis mellifera

Genus: Apis

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|350405161|ref|XP_003487345.1| PREDICTED: NADP-dependent malic enzyme-like [Bombus impatiens]

 Score =  374 bits (961), Expect = e-100,   Method: Compositional matrix adjust.
 Identities = 171/225 (76%), Positives = 200/225 (88%)

Query: 505 EYVVELMPIVYTPTVGLACQKYGLIFRRPRGLFISIHDKGHISEVLRNWPETDIRAIVVT 564
           E V ++MP+VYTPTVGLACQK+GLI+RRPRGLFISI+DKG+I +++ NWPE D+RAIVVT
Sbjct: 135 ENVEKMMPLVYTPTVGLACQKFGLIYRRPRGLFISIYDKGYIYDIMCNWPEHDVRAIVVT 194

Query: 565 DGERILGLGDLGAYGMGIPVGKLSLYTALAGIKPHQCLPITLDVGTNTQQLLDDPLYIGL 624
           DGERILGLGDLGAYGMGIP+GKLSLYTALAGIKPHQCLPITLDVGTNTQ LLDDPLYIG 
Sbjct: 195 DGERILGLGDLGAYGMGIPIGKLSLYTALAGIKPHQCLPITLDVGTNTQSLLDDPLYIGH 254

Query: 625 RQRRTTGQAYDDFIEEFMQAVVARYGQHVLIQFEDFANHSAFRFLDTYRNRYCVFNDDIQ 684
           R +R TG+ YD+F++EFMQAVV RYGQ+ LIQFEDF N +AFR L+ YR+ YC FNDDIQ
Sbjct: 255 RHKRVTGEEYDEFLDEFMQAVVKRYGQNTLIQFEDFGNANAFRLLNKYRDHYCTFNDDIQ 314

Query: 685 GTASVAVAGLLASLRITKTRLSDNTILFQGAGEGTASVAVAGLLA 729
           GTASVAVAGLLASLR+T T+LS+NTI+FQGAGE +  +A   ++A
Sbjct: 315 GTASVAVAGLLASLRVTNTKLSENTIVFQGAGEASLGIAWLCVMA 359

Source: Bombus impatiens

Species: Bombus impatiens

Genus: Bombus

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|340726186|ref|XP_003401442.1| PREDICTED: NADP-dependent malic enzyme-like isoform 2 [Bombus terrestris]

 Score =  373 bits (958), Expect = e-100,   Method: Compositional matrix adjust.
 Identities = 170/223 (76%), Positives = 197/223 (88%)

Query: 507 VVELMPIVYTPTVGLACQKYGLIFRRPRGLFISIHDKGHISEVLRNWPETDIRAIVVTDG 566
           V ++MP+VYTPTVGLACQK+GLI+RRPRGLFISIHDKG++ ++L NWPE D+RAIVVTDG
Sbjct: 163 VEKMMPLVYTPTVGLACQKFGLIYRRPRGLFISIHDKGYVYDILCNWPEHDVRAIVVTDG 222

Query: 567 ERILGLGDLGAYGMGIPVGKLSLYTALAGIKPHQCLPITLDVGTNTQQLLDDPLYIGLRQ 626
           ERILGLGDLGAYGMGIP+GKLSLYTALAGIKPHQCLPITLDVGTNTQ LLDDPLYIG R 
Sbjct: 223 ERILGLGDLGAYGMGIPIGKLSLYTALAGIKPHQCLPITLDVGTNTQSLLDDPLYIGHRH 282

Query: 627 RRTTGQAYDDFIEEFMQAVVARYGQHVLIQFEDFANHSAFRFLDTYRNRYCVFNDDIQGT 686
           +R  GQ YD+F++EFMQA V RYGQ+ LIQFEDF N +AFR L+ YR+ YC FNDDIQGT
Sbjct: 283 KRVIGQEYDEFLDEFMQAAVKRYGQNTLIQFEDFGNANAFRLLNKYRDHYCTFNDDIQGT 342

Query: 687 ASVAVAGLLASLRITKTRLSDNTILFQGAGEGTASVAVAGLLA 729
           ASVAVAGLLASLR+T T+LS+NTI+FQGAGE +  +A   ++A
Sbjct: 343 ASVAVAGLLASLRVTNTKLSENTIVFQGAGEASLGIAWLCVMA 385

Source: Bombus terrestris

Species: Bombus terrestris

Genus: Bombus

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|340726184|ref|XP_003401441.1| PREDICTED: NADP-dependent malic enzyme-like isoform 1 [Bombus terrestris]

 Score =  373 bits (957), Expect = e-100,   Method: Compositional matrix adjust.
 Identities = 170/223 (76%), Positives = 197/223 (88%)

Query: 507 VVELMPIVYTPTVGLACQKYGLIFRRPRGLFISIHDKGHISEVLRNWPETDIRAIVVTDG 566
           V ++MP+VYTPTVGLACQK+GLI+RRPRGLFISIHDKG++ ++L NWPE D+RAIVVTDG
Sbjct: 137 VEKMMPLVYTPTVGLACQKFGLIYRRPRGLFISIHDKGYVYDILCNWPEHDVRAIVVTDG 196

Query: 567 ERILGLGDLGAYGMGIPVGKLSLYTALAGIKPHQCLPITLDVGTNTQQLLDDPLYIGLRQ 626
           ERILGLGDLGAYGMGIP+GKLSLYTALAGIKPHQCLPITLDVGTNTQ LLDDPLYIG R 
Sbjct: 197 ERILGLGDLGAYGMGIPIGKLSLYTALAGIKPHQCLPITLDVGTNTQSLLDDPLYIGHRH 256

Query: 627 RRTTGQAYDDFIEEFMQAVVARYGQHVLIQFEDFANHSAFRFLDTYRNRYCVFNDDIQGT 686
           +R  GQ YD+F++EFMQA V RYGQ+ LIQFEDF N +AFR L+ YR+ YC FNDDIQGT
Sbjct: 257 KRVIGQEYDEFLDEFMQAAVKRYGQNTLIQFEDFGNANAFRLLNKYRDHYCTFNDDIQGT 316

Query: 687 ASVAVAGLLASLRITKTRLSDNTILFQGAGEGTASVAVAGLLA 729
           ASVAVAGLLASLR+T T+LS+NTI+FQGAGE +  +A   ++A
Sbjct: 317 ASVAVAGLLASLRVTNTKLSENTIVFQGAGEASLGIAWLCVMA 359

Source: Bombus terrestris

Species: Bombus terrestris

Genus: Bombus

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|242011898|ref|XP_002426680.1| NADP-dependent malic enzyme, putative [Pediculus humanus corporis] gi|212510851|gb|EEB13942.1| NADP-dependent malic enzyme, putative [Pediculus humanus corporis]

 Score =  372 bits (955), Expect = e-100,   Method: Compositional matrix adjust.
 Identities = 177/225 (78%), Positives = 196/225 (87%), Gaps = 2/225 (0%)

Query: 504 QEYVVELMPIVYTPTVGLACQKYGLIFRRPRGLFISIHDKGHISEVLRNWPETDIRAIVV 563
           QE V + MP+VYTPTVGLACQKYGLIFRRPRGLFI+IHDKGHI +VL+NWPE D+RAIVV
Sbjct: 714 QENVEQYMPLVYTPTVGLACQKYGLIFRRPRGLFITIHDKGHIYDVLKNWPERDVRAIVV 773

Query: 564 TDGERILGLGDLGAYGMGIPVGKLSLYTALAGIKPHQCLPITLDVGTNTQQLLDDPLYIG 623
           TDGERILGLGDLG  GMGIPVGKLSLYTALAGIKPHQCLPITLDVGTN Q  L+DPLYIG
Sbjct: 774 TDGERILGLGDLGVCGMGIPVGKLSLYTALAGIKPHQCLPITLDVGTNNQAFLNDPLYIG 833

Query: 624 LRQRRTTGQAYDDFIEEFMQAVVARYGQHVLIQFEDFANHSAFRFLDTYRNRYCVFNDDI 683
           LRQ R TG  Y  FI EFM+A V R+GQ+VLIQFEDF N +AFR L+TY+ +YC FNDDI
Sbjct: 834 LRQNRVTGPEYYAFINEFMEASVRRFGQNVLIQFEDFGNQNAFRLLETYQEKYCTFNDDI 893

Query: 684 QGTASVAVAGLLASLRITKTRLSDNTILFQGAGEGTASVAVAGLL 728
           QGTASVAVAGLLASLRITK+RLSD TI+FQGAGE  AS+ +A L+
Sbjct: 894 QGTASVAVAGLLASLRITKSRLSDYTIVFQGAGE--ASLGIAELI 936

Source: Pediculus humanus corporis

Species: Pediculus humanus

Genus: Pediculus

Family: Pediculidae

Order: Phthiraptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|91093507|ref|XP_969226.1| PREDICTED: similar to malate dehydrogenase [Tribolium castaneum] gi|270002679|gb|EEZ99126.1| hypothetical protein TcasGA2_TC005233 [Tribolium castaneum]

 Score =  372 bits (955), Expect = e-100,   Method: Compositional matrix adjust.
 Identities = 168/225 (74%), Positives = 199/225 (88%)

Query: 505 EYVVELMPIVYTPTVGLACQKYGLIFRRPRGLFISIHDKGHISEVLRNWPETDIRAIVVT 564
           E V ++MP++YTPTVG ACQK+GL++RRPRGLFI+IHDKGH+ ++L+NWPE+DIR IVVT
Sbjct: 139 ENVQDIMPLIYTPTVGEACQKFGLVYRRPRGLFITIHDKGHVYDILKNWPESDIRVIVVT 198

Query: 565 DGERILGLGDLGAYGMGIPVGKLSLYTALAGIKPHQCLPITLDVGTNTQQLLDDPLYIGL 624
           DGERILGLGDLGA GMGIP+GKLSLYTALAGIKPHQCLPITLDVGTNT+++L+DPLYIGL
Sbjct: 199 DGERILGLGDLGACGMGIPIGKLSLYTALAGIKPHQCLPITLDVGTNTEKMLNDPLYIGL 258

Query: 625 RQRRTTGQAYDDFIEEFMQAVVARYGQHVLIQFEDFANHSAFRFLDTYRNRYCVFNDDIQ 684
           +Q R  GQ YDDFIEEFMQ+VV R+GQ+ LIQFEDF N +AFR L  YR+ YC FNDDIQ
Sbjct: 259 KQNRVRGQQYDDFIEEFMQSVVRRWGQNTLIQFEDFGNANAFRLLGKYRDSYCTFNDDIQ 318

Query: 685 GTASVAVAGLLASLRITKTRLSDNTILFQGAGEGTASVAVAGLLA 729
           GTASVAVAG+LASLR TKTRLSDNT++FQGAGE +  +A   ++A
Sbjct: 319 GTASVAVAGILASLRATKTRLSDNTLVFQGAGEASLGIAALCVMA 363

Source: Tribolium castaneum

Species: Tribolium castaneum

Genus: Tribolium

Family: Tenebrionidae

Order: Coleoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	848
FB|FBgn0029155	624	Men-b "Malic enzyme b" [Drosop	0.251	0.341	0.694	3.3e-98
FB|FBgn0002719	763	Men "Malic enzyme" [Drosophila	0.245	0.272	0.711	3.4e-92
UNIPROTKB|F1P0Y6	576	ME1 "Malic enzyme" [Gallus gal	0.248	0.366	0.687	3.4e-90
ZFIN|ZDB-GENE-041111-294	603	me3 "malic enzyme 3, NADP(+)-d	0.248	0.349	0.691	4.4e-90
UNIPROTKB|E1C7M4	541	ME1 "Malic enzyme" [Gallus gal	0.248	0.390	0.687	1.5e-89
UNIPROTKB|F1MPH4	603	ME3 "Malic enzyme" [Bos taurus	0.248	0.349	0.663	2.7e-88
UNIPROTKB|F1MH32	604	ME3 "Malic enzyme" [Bos taurus	0.248	0.349	0.663	2.7e-88
UNIPROTKB|F1STS4	545	ME3 "Malic enzyme" [Sus scrofa	0.248	0.387	0.672	4.4e-88
UNIPROTKB|F1PQ35	604	ME3 "Malic enzyme" [Canis lupu	0.248	0.349	0.663	7.2e-88
UNIPROTKB|E9PMB9	581	ME3 "Malic enzyme" [Homo sapie	0.248	0.363	0.663	1.5e-87

FB|FBgn0029155 Men-b "Malic enzyme b" [Drosophila melanogaster (taxid:7227)]

 Score = 808 (289.5 bits), Expect = 3.3e-98, Sum P(2) = 3.3e-98
 Identities = 148/213 (69%), Positives = 172/213 (80%)

Query:   505 EYVVELMPIVYTPTVGLACQKYGLIFRRPRGLFISIHDKGHISEVLRNWPETDIRAIVVT 564
             E + +LMPIVYTPTVGLACQ++GLI+RRP GLFI+ +D+GHI +V++NWPE ++RAI VT
Sbjct:   130 ENIEDLMPIVYTPTVGLACQRFGLIYRRPHGLFITYNDRGHIFDVMKNWPEPNVRAICVT 189

Query:   565 DGERILGLGDLGAYGMGIPVGKLSLYTALAGIKPHQCLPITLDVGTNTQQLLDDPLYIGL 624
             DGERILGLGDLGA GMGIPVGKL+LYTALAGIKPHQCLPI +DVGTN   LL+DPLY+GL
Sbjct:   190 DGERILGLGDLGACGMGIPVGKLALYTALAGIKPHQCLPIVVDVGTNNIDLLEDPLYVGL 249

Query:   625 RQRRTTGQAYDDFIEEFMQAVVARYGQHVLIQFEDFANHSAFRFLDTYRNRYCVFNDDIQ 684
             RQ+R  G+ YD+FI+EFM+AVV RYGQ+ LIQFEDF NH+AFRFLD YRN YC FNDDIQ
Sbjct:   250 RQKRVVGREYDEFIDEFMEAVVQRYGQNTLIQFEDFGNHNAFRFLDKYRNTYCTFNDDIQ 309

Query:   685 GTXXXXXXXXXXXXRITKTRLSDNTILFQGAGE 717
             GT            RIT     D T LF GAGE
Sbjct:   310 GTASVAVAGLYASKRITGKSFKDYTFLFAGAGE 342

GO:0004473 "malate dehydrogenase (oxaloacetate-decarboxylating) (NADP+) activity" evidence=ISS;NAS

GO:0005739 "mitochondrion" evidence=ISS

GO:0006108 "malate metabolic process" evidence=ISS

GO:0006090 "pyruvate metabolic process" evidence=ISS

GO:0046872 "metal ion binding" evidence=IEA

GO:0055114 "oxidation-reduction process" evidence=IEA

GO:0016619 "malate dehydrogenase (oxaloacetate-decarboxylating) activity" evidence=IEA

GO:0051287 "NAD binding" evidence=IEA

FB|FBgn0002719 Men "Malic enzyme" [Drosophila melanogaster (taxid:7227)]

 Score = 797 (285.6 bits), Expect = 3.4e-92, Sum P(2) = 3.4e-92
 Identities = 148/208 (71%), Positives = 171/208 (82%)

Query:   510 LMPIVYTPTVGLACQKYGLIFRRPRGLFISIHDKGHISEVLRNWPETDIRAIVVTDGERI 569
             +MP+VYTPTVGLACQ+Y LI +  +G+FISI DKGHI +VL+NWPETD+RAIVVTDGERI
Sbjct:   300 MMPLVYTPTVGLACQRYSLIHQNAKGMFISIKDKGHIYDVLKNWPETDVRAIVVTDGERI 359

Query:   570 LGLGDLGAYGMGIPVGKLSLYTALAGIKPHQCLPITLDVGTNTQQLLDDPLYIGLRQRRT 629
             LGLGDLGA GMGIPVGKLSLYTALAGIKP QCLPITLDVGTNT+ +L+DPLYIGLR+RR 
Sbjct:   360 LGLGDLGANGMGIPVGKLSLYTALAGIKPSQCLPITLDVGTNTESILEDPLYIGLRERRA 419

Query:   630 TGQAYDDFIEEFMQAVVARYGQHVLIQFEDFANHSAFRFLDTYRNRYCVFNDDIQGTXXX 689
             TG  YD+FI+EFM A V R+GQ+ LIQFEDFAN +AFR L  YR+ +C FNDDIQGT   
Sbjct:   420 TGDLYDEFIDEFMHACVRRFGQNCLIQFEDFANANAFRLLSKYRDSFCTFNDDIQGTASV 479

Query:   690 XXXXXXXXXRITKTRLSDNTILFQGAGE 717
                      +I KT+L DNT+LF GAGE
Sbjct:   480 AVAGLLASLKIKKTQLKDNTLLFLGAGE 507

GO:0004473 "malate dehydrogenase (oxaloacetate-decarboxylating) (NADP+) activity" evidence=ISS;IDA

GO:0046872 "metal ion binding" evidence=IEA

GO:0006108 "malate metabolic process" evidence=IEA

GO:0055114 "oxidation-reduction process" evidence=IEA

GO:0016619 "malate dehydrogenase (oxaloacetate-decarboxylating) activity" evidence=IEA

GO:0051287 "NAD binding" evidence=IEA

GO:0030431 "sleep" evidence=IMP

GO:0010941 "regulation of cell death" evidence=IMP

GO:0008340 "determination of adult lifespan" evidence=IMP

UNIPROTKB|F1P0Y6 ME1 "Malic enzyme" [Gallus gallus (taxid:9031)]

 Score = 796 (285.3 bits), Expect = 3.4e-90, Sum P(2) = 3.4e-90
 Identities = 145/211 (68%), Positives = 172/211 (81%)

Query:   507 VVELMPIVYTPTVGLACQKYGLIFRRPRGLFISIHDKGHISEVLRNWPETDIRAIVVTDG 566
             + + MPIVYTPTVGLACQ YGL FRRPRGLFI+IHD+GHI+ +L++WPE+ I+AIVVTDG
Sbjct:   102 IEKFMPIVYTPTVGLACQHYGLAFRRPRGLFITIHDRGHIAAMLKSWPESVIKAIVVTDG 161

Query:   567 ERILGLGDLGAYGMGIPVGKLSLYTALAGIKPHQCLPITLDVGTNTQQLLDDPLYIGLRQ 626
             ERILGLGDLG YGMGIPVGKL+LYTA  G+KP++CLP+ LDVGT+ + LL DPLYIGLR 
Sbjct:   162 ERILGLGDLGCYGMGIPVGKLALYTACGGVKPYECLPVMLDVGTDNEALLKDPLYIGLRH 221

Query:   627 RRTTGQAYDDFIEEFMQAVVARYGQHVLIQFEDFANHSAFRFLDTYRNRYCVFNDDIQGT 686
             +R  GQAYDD ++EFM+AV + YG + LIQFEDFAN +AFR L  YRN+YC FNDDIQGT
Sbjct:   222 KRIRGQAYDDLLDEFMEAVTSSYGMNCLIQFEDFANVNAFRLLHKYRNKYCTFNDDIQGT 281

Query:   687 XXXXXXXXXXXXRITKTRLSDNTILFQGAGE 717
                         RITK RLSD+T+LFQGAGE
Sbjct:   282 ASVAVAGLLAALRITKNRLSDHTVLFQGAGE 312

GO:0006108 "malate metabolic process" evidence=IEA

GO:0016619 "malate dehydrogenase (oxaloacetate-decarboxylating) activity" evidence=IEA

GO:0051287 "NAD binding" evidence=IEA

GO:0005739 "mitochondrion" evidence=IEA

GO:0030145 "manganese ion binding" evidence=IEA

GO:0051262 "protein tetramerization" evidence=IEA

ZFIN|ZDB-GENE-041111-294 me3 "malic enzyme 3, NADP(+)-dependent, mitochondrial" [Danio rerio (taxid:7955)]

 Score = 798 (286.0 bits), Expect = 4.4e-90, Sum P(2) = 4.4e-90
 Identities = 146/211 (69%), Positives = 169/211 (80%)

Query:   507 VVELMPIVYTPTVGLACQKYGLIFRRPRGLFISIHDKGHISEVLRNWPETDIRAIVVTDG 566
             + E MPIVYTPTVGLACQ+YGL FRRPRGLFI+IHDKGHI+ +L +WPE DI+AIVVTDG
Sbjct:   128 IEEFMPIVYTPTVGLACQQYGLAFRRPRGLFITIHDKGHIATMLNSWPEEDIKAIVVTDG 187

Query:   567 ERILGLGDLGAYGMGIPVGKLSLYTALAGIKPHQCLPITLDVGTNTQQLLDDPLYIGLRQ 626
             ERILGLGDLG YGMGIPVGKL+LYTA  G+ P QCLP+ LDVGT+ Q LLDDPLYIGL+ 
Sbjct:   188 ERILGLGDLGGYGMGIPVGKLALYTACGGVPPQQCLPVLLDVGTDNQTLLDDPLYIGLKH 247

Query:   627 RRTTGQAYDDFIEEFMQAVVARYGQHVLIQFEDFANHSAFRFLDTYRNRYCVFNDDIQGT 686
             +R  G+ YDD I+EFMQAV  +YG + LIQFEDFAN +AFR L+ YRNRYC FNDDIQGT
Sbjct:   248 KRVRGKEYDDLIDEFMQAVTDKYGMNCLIQFEDFANSNAFRILNKYRNRYCTFNDDIQGT 307

Query:   687 XXXXXXXXXXXXRITKTRLSDNTILFQGAGE 717
                         +ITK +LSD+  +FQGAGE
Sbjct:   308 ASVAVAGILAALKITKNKLSDHKFVFQGAGE 338

GO:0016616 "oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor" evidence=IEA

GO:0000166 "nucleotide binding" evidence=IEA

GO:0055114 "oxidation-reduction process" evidence=IEA

GO:0046872 "metal ion binding" evidence=IEA

GO:0004470 "malic enzyme activity" evidence=IEA

GO:0016491 "oxidoreductase activity" evidence=IEA

GO:0016619 "malate dehydrogenase (oxaloacetate-decarboxylating) activity" evidence=IEA

GO:0051287 "NAD binding" evidence=IEA

GO:0006108 "malate metabolic process" evidence=IEA

GO:0005575 "cellular_component" evidence=ND

UNIPROTKB|E1C7M4 ME1 "Malic enzyme" [Gallus gallus (taxid:9031)]

 Score = 796 (285.3 bits), Expect = 1.5e-89, Sum P(2) = 1.5e-89
 Identities = 145/211 (68%), Positives = 172/211 (81%)

Query:   507 VVELMPIVYTPTVGLACQKYGLIFRRPRGLFISIHDKGHISEVLRNWPETDIRAIVVTDG 566
             + + MPIVYTPTVGLACQ YGL FRRPRGLFI+IHD+GHI+ +L++WPE+ I+AIVVTDG
Sbjct:    67 IEKFMPIVYTPTVGLACQHYGLAFRRPRGLFITIHDRGHIAAMLKSWPESVIKAIVVTDG 126

Query:   567 ERILGLGDLGAYGMGIPVGKLSLYTALAGIKPHQCLPITLDVGTNTQQLLDDPLYIGLRQ 626
             ERILGLGDLG YGMGIPVGKL+LYTA  G+KP++CLP+ LDVGT+ + LL DPLYIGLR 
Sbjct:   127 ERILGLGDLGCYGMGIPVGKLALYTACGGVKPYECLPVMLDVGTDNEALLKDPLYIGLRH 186

Query:   627 RRTTGQAYDDFIEEFMQAVVARYGQHVLIQFEDFANHSAFRFLDTYRNRYCVFNDDIQGT 686
             +R  GQAYDD ++EFM+AV + YG + LIQFEDFAN +AFR L  YRN+YC FNDDIQGT
Sbjct:   187 KRIRGQAYDDLLDEFMEAVTSSYGMNCLIQFEDFANVNAFRLLHKYRNKYCTFNDDIQGT 246

Query:   687 XXXXXXXXXXXXRITKTRLSDNTILFQGAGE 717
                         RITK RLSD+T+LFQGAGE
Sbjct:   247 ASVAVAGLLAALRITKNRLSDHTVLFQGAGE 277

GO:0006108 "malate metabolic process" evidence=IEA

GO:0016619 "malate dehydrogenase (oxaloacetate-decarboxylating) activity" evidence=IEA

GO:0051287 "NAD binding" evidence=IEA

GO:0005739 "mitochondrion" evidence=IEA

GO:0030145 "manganese ion binding" evidence=IEA

GO:0051262 "protein tetramerization" evidence=IEA

UNIPROTKB|F1MPH4 ME3 "Malic enzyme" [Bos taurus (taxid:9913)]

 Score = 778 (278.9 bits), Expect = 2.7e-88, Sum P(2) = 2.7e-88
 Identities = 140/211 (66%), Positives = 169/211 (80%)

Query:   507 VVELMPIVYTPTVGLACQKYGLIFRRPRGLFISIHDKGHISEVLRNWPETDIRAIVVTDG 566
             V + +PIVYTPTVGLACQ YGL FRRPRGLFI++HDKGH++ +L +WPE DI+A+VVTDG
Sbjct:   129 VEKFLPIVYTPTVGLACQHYGLTFRRPRGLFITVHDKGHLATMLNSWPEDDIKAVVVTDG 188

Query:   567 ERILGLGDLGAYGMGIPVGKLSLYTALAGIKPHQCLPITLDVGTNTQQLLDDPLYIGLRQ 626
             ERILGLGDLG YGMGIPVGKL+LYTA  G+ P QCLP+ LDVGTN ++LL DPLYIGL+ 
Sbjct:   189 ERILGLGDLGCYGMGIPVGKLALYTACGGVNPRQCLPVLLDVGTNNEELLRDPLYIGLKH 248

Query:   627 RRTTGQAYDDFIEEFMQAVVARYGQHVLIQFEDFANHSAFRFLDTYRNRYCVFNDDIQGT 686
             RR  GQ YDD ++EFMQAV  ++G + LIQFEDFAN +AFR L+ YRN+YC+FNDDIQGT
Sbjct:   249 RRVRGQEYDDLLDEFMQAVTDKFGINCLIQFEDFANANAFRLLNKYRNKYCMFNDDIQGT 308

Query:   687 XXXXXXXXXXXXRITKTRLSDNTILFQGAGE 717
                         RITK +LS++  +FQGAGE
Sbjct:   309 ASVAVAGILAALRITKNKLSNHVFVFQGAGE 339

GO:0046872 "metal ion binding" evidence=IEA

GO:0051287 "NAD binding" evidence=IEA

GO:0016619 "malate dehydrogenase (oxaloacetate-decarboxylating) activity" evidence=IEA

GO:0006108 "malate metabolic process" evidence=IEA

UNIPROTKB|F1MH32 ME3 "Malic enzyme" [Bos taurus (taxid:9913)]

 Score = 778 (278.9 bits), Expect = 2.7e-88, Sum P(2) = 2.7e-88
 Identities = 140/211 (66%), Positives = 169/211 (80%)

Query:   507 VVELMPIVYTPTVGLACQKYGLIFRRPRGLFISIHDKGHISEVLRNWPETDIRAIVVTDG 566
             V + +PIVYTPTVGLACQ YGL FRRPRGLFI++HDKGH++ +L +WPE DI+A+VVTDG
Sbjct:   129 VEKFLPIVYTPTVGLACQHYGLTFRRPRGLFITVHDKGHLATMLNSWPEDDIKAVVVTDG 188

Query:   567 ERILGLGDLGAYGMGIPVGKLSLYTALAGIKPHQCLPITLDVGTNTQQLLDDPLYIGLRQ 626
             ERILGLGDLG YGMGIPVGKL+LYTA  G+ P QCLP+ LDVGTN ++LL DPLYIGL+ 
Sbjct:   189 ERILGLGDLGCYGMGIPVGKLALYTACGGVNPRQCLPVLLDVGTNNEELLRDPLYIGLKH 248

Query:   627 RRTTGQAYDDFIEEFMQAVVARYGQHVLIQFEDFANHSAFRFLDTYRNRYCVFNDDIQGT 686
             RR  GQ YDD ++EFMQAV  ++G + LIQFEDFAN +AFR L+ YRN+YC+FNDDIQGT
Sbjct:   249 RRVRGQEYDDLLDEFMQAVTDKFGINCLIQFEDFANANAFRLLNKYRNKYCMFNDDIQGT 308

Query:   687 XXXXXXXXXXXXRITKTRLSDNTILFQGAGE 717
                         RITK +LS++  +FQGAGE
Sbjct:   309 ASVAVAGILAALRITKNKLSNHVFVFQGAGE 339

GO:0006090 "pyruvate metabolic process" evidence=IEA

GO:0005739 "mitochondrion" evidence=IEA

GO:0004473 "malate dehydrogenase (oxaloacetate-decarboxylating) (NADP+) activity" evidence=IEA

GO:0046872 "metal ion binding" evidence=IEA

GO:0051287 "NAD binding" evidence=IEA

GO:0016619 "malate dehydrogenase (oxaloacetate-decarboxylating) activity" evidence=IEA

GO:0006108 "malate metabolic process" evidence=IEA

UNIPROTKB|F1STS4 ME3 "Malic enzyme" [Sus scrofa (taxid:9823)]

 Score = 778 (278.9 bits), Expect = 4.4e-88, Sum P(2) = 4.4e-88
 Identities = 142/211 (67%), Positives = 168/211 (79%)

Query:   507 VVELMPIVYTPTVGLACQKYGLIFRRPRGLFISIHDKGHISEVLRNWPETDIRAIVVTDG 566
             V + MPIVYTPTVGLACQ YGL FRRPRGLFI+IHDKGH+  +L +WPE DI+A+VVTDG
Sbjct:    70 VEKFMPIVYTPTVGLACQHYGLTFRRPRGLFITIHDKGHLPTMLNSWPEDDIKAVVVTDG 129

Query:   567 ERILGLGDLGAYGMGIPVGKLSLYTALAGIKPHQCLPITLDVGTNTQQLLDDPLYIGLRQ 626
             ERILGLGDLG YGMGIPVGKL+LYTA  G+ P QCLP+ LDVGTN ++LL DPLYIGL+ 
Sbjct:   130 ERILGLGDLGCYGMGIPVGKLALYTACGGVNPRQCLPVLLDVGTNNEELLRDPLYIGLKH 189

Query:   627 RRTTGQAYDDFIEEFMQAVVARYGQHVLIQFEDFANHSAFRFLDTYRNRYCVFNDDIQGT 686
             RR  GQ YDD ++EFMQAV  ++G + LIQFEDFAN +AFR L+ YRN+YC+FNDDIQGT
Sbjct:   190 RRVRGQDYDDLLDEFMQAVTDKFGINCLIQFEDFANANAFRLLNKYRNKYCMFNDDIQGT 249

Query:   687 XXXXXXXXXXXXRITKTRLSDNTILFQGAGE 717
                         RITK +LS++  +FQGAGE
Sbjct:   250 ASVDAAGIQAALRITKDKLSNHVFVFQGAGE 280

GO:0006090 "pyruvate metabolic process" evidence=IEA

GO:0005739 "mitochondrion" evidence=IEA

GO:0004473 "malate dehydrogenase (oxaloacetate-decarboxylating) (NADP+) activity" evidence=IEA

GO:0046872 "metal ion binding" evidence=IEA

GO:0051287 "NAD binding" evidence=IEA

GO:0016619 "malate dehydrogenase (oxaloacetate-decarboxylating) activity" evidence=IEA

GO:0006108 "malate metabolic process" evidence=IEA

UNIPROTKB|F1PQ35 ME3 "Malic enzyme" [Canis lupus familiaris (taxid:9615)]

 Score = 776 (278.2 bits), Expect = 7.2e-88, Sum P(2) = 7.2e-88
 Identities = 140/211 (66%), Positives = 170/211 (80%)

Query:   507 VVELMPIVYTPTVGLACQKYGLIFRRPRGLFISIHDKGHISEVLRNWPETDIRAIVVTDG 566
             V + MPIVYTPTVGLACQ+YGL FRRPRGLFI+IHDKGH++ +L +WPE DI+A+VVTDG
Sbjct:   129 VEKFMPIVYTPTVGLACQQYGLTFRRPRGLFITIHDKGHLATMLNSWPEDDIKAVVVTDG 188

Query:   567 ERILGLGDLGAYGMGIPVGKLSLYTALAGIKPHQCLPITLDVGTNTQQLLDDPLYIGLRQ 626
             ERILGLGDLG YGMGIPVGKL+LYTA  G+ P QCLP+ LDVGTN ++LL DPLYIGL+ 
Sbjct:   189 ERILGLGDLGCYGMGIPVGKLALYTACGGVSPQQCLPVLLDVGTNNEELLRDPLYIGLKH 248

Query:   627 RRTTGQAYDDFIEEFMQAVVARYGQHVLIQFEDFANHSAFRFLDTYRNRYCVFNDDIQGT 686
             +R  G+ YDD ++EFMQAV  ++G + LIQFEDFAN +AFR L+ YRN+YC+FNDDIQGT
Sbjct:   249 QRVRGKEYDDLLDEFMQAVTDKFGINCLIQFEDFANANAFRLLNKYRNKYCMFNDDIQGT 308

Query:   687 XXXXXXXXXXXXRITKTRLSDNTILFQGAGE 717
                         RITK +LS++  +FQGAGE
Sbjct:   309 ASVAVAGILAALRITKNKLSNHVFVFQGAGE 339

GO:0046872 "metal ion binding" evidence=IEA

GO:0051287 "NAD binding" evidence=IEA

GO:0016619 "malate dehydrogenase (oxaloacetate-decarboxylating) activity" evidence=IEA

GO:0006108 "malate metabolic process" evidence=IEA

UNIPROTKB|E9PMB9 ME3 "Malic enzyme" [Homo sapiens (taxid:9606)]

 Score = 773 (277.2 bits), Expect = 1.5e-87, Sum P(2) = 1.5e-87
 Identities = 140/211 (66%), Positives = 170/211 (80%)

Query:   507 VVELMPIVYTPTVGLACQKYGLIFRRPRGLFISIHDKGHISEVLRNWPETDIRAIVVTDG 566
             V + MPIVYTPTVGLACQ YGL FRRPRGLFI+IHDKGH++ +L +WPE +I+A+VVTDG
Sbjct:   129 VEKFMPIVYTPTVGLACQHYGLTFRRPRGLFITIHDKGHLATMLNSWPEDNIKAVVVTDG 188

Query:   567 ERILGLGDLGAYGMGIPVGKLSLYTALAGIKPHQCLPITLDVGTNTQQLLDDPLYIGLRQ 626
             ERILGLGDLG YGMGIPVGKL+LYTA  G+ P QCLP+ LDVGTN ++LL DPLYIGL+ 
Sbjct:   189 ERILGLGDLGCYGMGIPVGKLALYTACGGVNPQQCLPVLLDVGTNNEELLRDPLYIGLKH 248

Query:   627 RRTTGQAYDDFIEEFMQAVVARYGQHVLIQFEDFANHSAFRFLDTYRNRYCVFNDDIQGT 686
             +R  G+AYDD ++EFMQAV  ++G + LIQFEDFAN +AFR L+ YRN+YC+FNDDIQGT
Sbjct:   249 QRVHGKAYDDLLDEFMQAVTDKFGINCLIQFEDFANANAFRLLNKYRNKYCMFNDDIQGT 308

Query:   687 XXXXXXXXXXXXRITKTRLSDNTILFQGAGE 717
                         RITK +LS++  +FQGAGE
Sbjct:   309 ASVAVAGILAALRITKNKLSNHVFVFQGAGE 339

GO:0006108 "malate metabolic process" evidence=IEA

GO:0016619 "malate dehydrogenase (oxaloacetate-decarboxylating) activity" evidence=IEA

GO:0051287 "NAD binding" evidence=IEA

GO:0046872 "metal ion binding" evidence=IEA

GO:0005739 "mitochondrion" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
A8FZ49	MAO1_SHESH	1, ., 1, ., 1, ., 3, 8	0.5260	0.2665	0.4021	yes	N/A

EC Number Prediction by EFICAz Software

Prediction Level	EC number	Confidence of Prediction
3rd Layer	1.1.1	0.691

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database

ID	Length	Definition	E-value
Query	848
PLN03129	581	PLN03129, PLN03129, NADP-dependent malic enzyme; P	1e-136
PRK13529	563	PRK13529, PRK13529, malate dehydrogenase; Provisio	1e-126
PTZ00317	559	PTZ00317, PTZ00317, NADP-dependent malic enzyme; P	1e-99
pfam00390	182	pfam00390, malic, Malic enzyme, N-terminal domain	5e-96
COG0281	432	COG0281, SfcA, Malic enzyme [Energy production and	4e-46
cd05312	279	cd05312, NAD_bind_1_malic_enz, NAD(P) binding doma	8e-38
cd05312	279	cd05312, NAD_bind_1_malic_enz, NAD(P) binding doma	6e-35
cd05312	279	cd05312, NAD_bind_1_malic_enz, NAD(P) binding doma	7e-35
PLN03129	581	PLN03129, PLN03129, NADP-dependent malic enzyme; P	5e-34
pfam03949	255	pfam03949, Malic_M, Malic enzyme, NAD binding doma	1e-32
PTZ00317	559	PTZ00317, PTZ00317, NADP-dependent malic enzyme; P	2e-32
pfam03949	255	pfam03949, Malic_M, Malic enzyme, NAD binding doma	7e-31
pfam03949	255	pfam03949, Malic_M, Malic enzyme, NAD binding doma	5e-30
PLN03129	581	PLN03129, PLN03129, NADP-dependent malic enzyme; P	8e-30
PRK13529	563	PRK13529, PRK13529, malate dehydrogenase; Provisio	2e-29
pfam00390	182	pfam00390, malic, Malic enzyme, N-terminal domain	2e-29
PLN03129	581	PLN03129, PLN03129, NADP-dependent malic enzyme; P	3e-29
PRK13529	563	PRK13529, PRK13529, malate dehydrogenase; Provisio	1e-28
PLN03129	581	PLN03129, PLN03129, NADP-dependent malic enzyme; P	6e-28
cd00762	254	cd00762, NAD_bind_malic_enz, NAD(P) binding domain	1e-27
PRK13529	563	PRK13529, PRK13529, malate dehydrogenase; Provisio	2e-27
PTZ00317	559	PTZ00317, PTZ00317, NADP-dependent malic enzyme; P	2e-27
cd05312	279	cd05312, NAD_bind_1_malic_enz, NAD(P) binding doma	2e-26
PRK13529	563	PRK13529, PRK13529, malate dehydrogenase; Provisio	1e-25
cd00762	254	cd00762, NAD_bind_malic_enz, NAD(P) binding domain	1e-24
smart00919	231	smart00919, Malic_M, Malic enzyme, NAD binding dom	1e-24
smart00919	231	smart00919, Malic_M, Malic enzyme, NAD binding dom	1e-24
cd00762	254	cd00762, NAD_bind_malic_enz, NAD(P) binding domain	1e-23
pfam03949	255	pfam03949, Malic_M, Malic enzyme, NAD binding doma	7e-23
PLN03129	581	PLN03129, PLN03129, NADP-dependent malic enzyme; P	5e-20
PRK13529	563	PRK13529, PRK13529, malate dehydrogenase; Provisio	2e-19
PTZ00317	559	PTZ00317, PTZ00317, NADP-dependent malic enzyme; P	2e-18
smart00919	231	smart00919, Malic_M, Malic enzyme, NAD binding dom	1e-16
PTZ00317	559	PTZ00317, PTZ00317, NADP-dependent malic enzyme; P	3e-16
COG0281	432	COG0281, SfcA, Malic enzyme [Energy production and	2e-14
cd00762	254	cd00762, NAD_bind_malic_enz, NAD(P) binding domain	2e-14
smart00919	231	smart00919, Malic_M, Malic enzyme, NAD binding dom	3e-14
PRK13529	563	PRK13529, PRK13529, malate dehydrogenase; Provisio	3e-13
PTZ00317	559	PTZ00317, PTZ00317, NADP-dependent malic enzyme; P	3e-13
COG0281	432	COG0281, SfcA, Malic enzyme [Energy production and	5e-13
PLN03129	581	PLN03129, PLN03129, NADP-dependent malic enzyme; P	9e-13
COG0281	432	COG0281, SfcA, Malic enzyme [Energy production and	2e-12
PRK13529	563	PRK13529, PRK13529, malate dehydrogenase; Provisio	3e-12
pfam00390	182	pfam00390, malic, Malic enzyme, N-terminal domain	3e-12
cd05312	279	cd05312, NAD_bind_1_malic_enz, NAD(P) binding doma	3e-12
pfam03949	255	pfam03949, Malic_M, Malic enzyme, NAD binding doma	2e-11
smart00919	231	smart00919, Malic_M, Malic enzyme, NAD binding dom	2e-11
cd05312	279	cd05312, NAD_bind_1_malic_enz, NAD(P) binding doma	1e-10
smart00919	231	smart00919, Malic_M, Malic enzyme, NAD binding dom	2e-10
PLN03129	581	PLN03129, PLN03129, NADP-dependent malic enzyme; P	4e-10
pfam03949	255	pfam03949, Malic_M, Malic enzyme, NAD binding doma	5e-10
cd00762	254	cd00762, NAD_bind_malic_enz, NAD(P) binding domain	5e-10
cd00762	254	cd00762, NAD_bind_malic_enz, NAD(P) binding domain	4e-09
cd05312	279	cd05312, NAD_bind_1_malic_enz, NAD(P) binding doma	6e-09
cd05311	226	cd05311, NAD_bind_2_malic_enz, NAD(P) binding doma	9e-09
cd05312	279	cd05312, NAD_bind_1_malic_enz, NAD(P) binding doma	1e-08
PTZ00317	559	PTZ00317, PTZ00317, NADP-dependent malic enzyme; P	2e-08
COG0281	432	COG0281, SfcA, Malic enzyme [Energy production and	3e-08
PLN03129	581	PLN03129, PLN03129, NADP-dependent malic enzyme; P	1e-07
PLN03129	581	PLN03129, PLN03129, NADP-dependent malic enzyme; P	1e-07
smart00919	231	smart00919, Malic_M, Malic enzyme, NAD binding dom	1e-07
PRK13529	563	PRK13529, PRK13529, malate dehydrogenase; Provisio	2e-07
pfam03949	255	pfam03949, Malic_M, Malic enzyme, NAD binding doma	2e-07
pfam03949	255	pfam03949, Malic_M, Malic enzyme, NAD binding doma	2e-07
cd00762	254	cd00762, NAD_bind_malic_enz, NAD(P) binding domain	2e-07
cd00762	254	cd00762, NAD_bind_malic_enz, NAD(P) binding domain	2e-07
smart00919	231	smart00919, Malic_M, Malic enzyme, NAD binding dom	3e-07
cd05311	226	cd05311, NAD_bind_2_malic_enz, NAD(P) binding doma	3e-07
PRK07232	752	PRK07232, PRK07232, bifunctional malic enzyme oxid	6e-07
cd05191	86	cd05191, NAD_bind_amino_acid_DH, NAD(P) binding do	2e-06
cd05191	86	cd05191, NAD_bind_amino_acid_DH, NAD(P) binding do	3e-06
PRK12862	763	PRK12862, PRK12862, malic enzyme; Reviewed	3e-06
PRK13529	563	PRK13529, PRK13529, malate dehydrogenase; Provisio	4e-06
COG0281	432	COG0281, SfcA, Malic enzyme [Energy production and	6e-06
PRK07232	752	PRK07232, PRK07232, bifunctional malic enzyme oxid	1e-05
PRK12862	763	PRK12862, PRK12862, malic enzyme; Reviewed	3e-05
cd05311	226	cd05311, NAD_bind_2_malic_enz, NAD(P) binding doma	4e-05
cd05311	226	cd05311, NAD_bind_2_malic_enz, NAD(P) binding doma	4e-05
PRK12862	763	PRK12862, PRK12862, malic enzyme; Reviewed	4e-05
COG0281	432	COG0281, SfcA, Malic enzyme [Energy production and	1e-04
PRK12861	764	PRK12861, PRK12861, malic enzyme; Reviewed	4e-04
COG0281	432	COG0281, SfcA, Malic enzyme [Energy production and	5e-04
PRK07232	752	PRK07232, PRK07232, bifunctional malic enzyme oxid	6e-04
PTZ00317	559	PTZ00317, PTZ00317, NADP-dependent malic enzyme; P	7e-04
COG0281	432	COG0281, SfcA, Malic enzyme [Energy production and	0.001
cd05191	86	cd05191, NAD_bind_amino_acid_DH, NAD(P) binding do	0.001
cd05311	226	cd05311, NAD_bind_2_malic_enz, NAD(P) binding doma	0.003
cd05191	86	cd05191, NAD_bind_amino_acid_DH, NAD(P) binding do	0.003

>gnl|CDD|215594 PLN03129, PLN03129, NADP-dependent malic enzyme; Provisional

 Score =  418 bits (1076), Expect = e-136
 Identities = 143/226 (63%), Positives = 175/226 (77%), Gaps = 2/226 (0%)

Query: 505 EYVVELMPIVYTPTVGLACQKYGLIFRRPRGLFISIHDKGHISEVLRNWPETDIRAIVVT 564
           + + EL+PIVYTPTVG ACQKYG +FRRPRGL+IS+ DKG +  +L+NWPE D++ IVVT
Sbjct: 119 DNIEELLPIVYTPTVGEACQKYGSLFRRPRGLYISLKDKGRVLSMLKNWPERDVQVIVVT 178

Query: 565 DGERILGLGDLGAYGMGIPVGKLSLYTALAGIKPHQCLPITLDVGTNTQQLLDDPLYIGL 624
           DGERILGLGDLG  GMGIPVGKL LYTA  GI+P   LP+ +DVGTN ++LL+DP YIGL
Sbjct: 179 DGERILGLGDLGVQGMGIPVGKLDLYTAAGGIRPSAVLPVCIDVGTNNEKLLNDPFYIGL 238

Query: 625 RQRRTTGQAYDDFIEEFMQAVVARYGQHVLIQFEDFANHSAFRFLDTYRNRYCVFNDDIQ 684
           RQ R TG+ YD+ ++EFM+AV  R+G  VL+QFEDFAN +AFR L  YR  +  FNDDIQ
Sbjct: 239 RQPRLTGEEYDELVDEFMEAVKQRWGPKVLVQFEDFANKNAFRLLQRYRTTHLCFNDDIQ 298

Query: 685 GTASVAVAGLLASLRITKTRLSDNTILFQGAGEGTASVAVAGLLAS 730
           GTA+VA+AGLLA+LR T   L+D  ILF GAGE  A   +A L+A 
Sbjct: 299 GTAAVALAGLLAALRATGGDLADQRILFAGAGE--AGTGIAELIAL 342

Length = 581

>gnl|CDD|237414 PRK13529, PRK13529, malate dehydrogenase; Provisional

 Score =  391 bits (1006), Expect = e-126
 Identities = 127/227 (55%), Positives = 168/227 (74%), Gaps = 3/227 (1%)

Query: 504 QEYVVELMPIVYTPTVGLACQKYGLIFRRPRGLFISIHDKGHISEVLRNWPETDIRAIVV 563
            +++ E+MPI+YTPTVG AC+++  I+RRPRGLFIS  D+  I ++L+N P  DI+ IVV
Sbjct: 93  SDHLEEMMPIIYTPTVGEACERFSHIYRRPRGLFISYDDRDRIEDILQNAPNRDIKLIVV 152

Query: 564 TDGERILGLGDLGAYGMGIPVGKLSLYTALAGIKPHQCLPITLDVGTNTQQLLDDPLYIG 623
           TDGERILG+GD G  GMGIP+GKLSLYTA  GI P + LP+ LDVGTN +QLL+DPLY+G
Sbjct: 153 TDGERILGIGDQGIGGMGIPIGKLSLYTACGGIDPARTLPVVLDVGTNNEQLLNDPLYLG 212

Query: 624 LRQRRTTGQAYDDFIEEFMQAVVARYGQHVLIQFEDFANHSAFRFLDTYRNRYCVFNDDI 683
            R  R  G+ YD+F++EF+QAV  R+  + L+QFEDFA  +A R L+ YR+  C FNDDI
Sbjct: 213 WRHPRIRGEEYDEFVDEFVQAVKRRF-PNALLQFEDFAQKNARRILERYRDEICTFNDDI 271

Query: 684 QGTASVAVAGLLASLRITKTRLSDNTILFQGAGEGTASVAVAGLLAS 730
           QGT +V +AGLLA+L+IT   LSD  I+F GA  G+A   +A  + +
Sbjct: 272 QGTGAVTLAGLLAALKITGEPLSDQRIVFLGA--GSAGCGIADQIVA 316

Length = 563

>gnl|CDD|240357 PTZ00317, PTZ00317, NADP-dependent malic enzyme; Provisional

 Score =  320 bits (823), Expect = 1e-99
 Identities = 117/226 (51%), Positives = 163/226 (72%), Gaps = 3/226 (1%)

Query: 506 YVVELMPIVYTPTVGLACQKYGLIFRRPRGLFISIHDKGHISEVLRNWPETDIRAIVVTD 565
           Y+ EL+PI+YTPTVG ACQ Y  +F+R RGL++S   KG I E+L+NWP  ++  IV+TD
Sbjct: 97  YLKELLPIIYTPTVGEACQNYSNLFQRDRGLYLSRAHKGKIREILKNWPYDNVDVIVITD 156

Query: 566 GERILGLGDLGAYGMGIPVGKLSLYTALAGIKPHQCLPITLDVGTNTQQLLDDPLYIGLR 625
           G RILGLGDLGA GMGI +GKLSLY A  GI P + LP+ LDVGTN ++LL+DPLY+GLR
Sbjct: 157 GSRILGLGDLGANGMGISIGKLSLYVAGGGINPSRVLPVVLDVGTNNEKLLNDPLYLGLR 216

Query: 626 QRRTTGQAYDDFIEEFMQAVVARYGQHVLIQFEDFANHSAFRFLDTYRNRYCVFNDDIQG 685
           ++R     Y + ++EFM+AV +R+  + ++QFEDF+N+  F  L+ Y+N+Y  FNDDIQG
Sbjct: 217 EKRLDDDEYYELLDEFMEAVSSRW-PNAVVQFEDFSNNHCFDLLERYQNKYRCFNDDIQG 275

Query: 686 TASVAVAGLLASLRITKTRLSDNTILFQGAGEGTASVAVAGLLASL 731
           T +V  AG L +L+++     +  I+F GA  G+A++ VA  +A L
Sbjct: 276 TGAVIAAGFLNALKLSGVPPEEQRIVFFGA--GSAAIGVANNIADL 319

Length = 559

>gnl|CDD|215894 pfam00390, malic, Malic enzyme, N-terminal domain

 Score =  297 bits (763), Expect = 5e-96
 Identities = 100/170 (58%), Positives = 126/170 (74%)

Query: 504 QEYVVELMPIVYTPTVGLACQKYGLIFRRPRGLFISIHDKGHISEVLRNWPETDIRAIVV 563
             ++ E +PIVYTPTVG ACQ    I+RRPRGL+ SI + G I ++L+NWPE D+R IVV
Sbjct: 13  STHIEEDLPIVYTPTVGEACQAISEIYRRPRGLYTSIGNLGKIKDILKNWPEEDVRVIVV 72

Query: 564 TDGERILGLGDLGAYGMGIPVGKLSLYTALAGIKPHQCLPITLDVGTNTQQLLDDPLYIG 623
           TDGERILGLGDLG  GM I  GKL+LYTA AGI P + LPI LDVGTN ++LL+DPLY+G
Sbjct: 73  TDGERILGLGDLGVAGMPIMEGKLALYTAFAGIDPSRVLPIVLDVGTNNEKLLNDPLYLG 132

Query: 624 LRQRRTTGQAYDDFIEEFMQAVVARYGQHVLIQFEDFANHSAFRFLDTYR 673
           LR +R  G+ YD+F++EF++AV A +     IQFEDF   +AF  L+ YR
Sbjct: 133 LRHKRVRGEEYDEFVDEFVEAVKALFPPFGGIQFEDFGAPNAFEILERYR 182

Length = 182

>gnl|CDD|223358 COG0281, SfcA, Malic enzyme [Energy production and conversion]

 Score =  170 bits (434), Expect = 4e-46
 Identities = 72/225 (32%), Positives = 101/225 (44%), Gaps = 48/225 (21%)

Query: 508 VELMPIVYTPTVGLACQKYGLIFRRPRGLFISIHDKGHISEVLRNWPETDIRAIVVTDGE 567
            E +P+ YTP V  AC+      R+      S   +G+                VVTDG 
Sbjct: 44  QEDLPLAYTPGVAEACKAISEDPRKAY----SYTARGN-------------LVAVVTDGT 86

Query: 568 RILGLGDLGAY-GMGIPVGKLSLYTALAGIKPHQCLPITLDVGTNTQQLLDDPLYIGLRQ 626
            +LGLG++G   G  +  GK  L+ A AGI     LPI LDVGTN               
Sbjct: 87  AVLGLGNIGPLAGKPVMEGKAVLFKAFAGID---VLPIELDVGTN--------------- 128

Query: 627 RRTTGQAYDDFIEEFMQAVVARYGQHVLIQFEDFANHSAFRFLDTYRNRYCVFNDDIQGT 686
                    + I EF++A+   +G  + ++  D     A      YR    VF+DD QGT
Sbjct: 129 ---------NEIIEFVKALEPTFGG-INLEDIDAPRCFAIEERLRYRMNIPVFHDDQQGT 178

Query: 687 ASVAVAGLLASLRITKTRLSDNTILFQGAGEGTASVAVAGLLASL 731
           A V +A LL +L++T  +L D  I+  GA  G A +A+A LL + 
Sbjct: 179 AIVTLAALLNALKLTGKKLKDQKIVINGA--GAAGIAIADLLVAA 221

Length = 432

>gnl|CDD|133454 cd05312, NAD_bind_1_malic_enz, NAD(P) binding domain of malic enzyme (ME), subgroup 1

 Score =  142 bits (361), Expect = 8e-38
 Identities = 60/108 (55%), Positives = 74/108 (68%), Gaps = 8/108 (7%)

Query: 1   LLASLRITKTRLSDNTILFQGAGEASLGIADLCVMAMQKEGTSEQDARDKIWMVDSKGLI 60
           LLA+LRIT   LSD  ILF GAG A +GIADL V AM +EG SE++AR KIW+VDSKGL+
Sbjct: 12  LLAALRITGKPLSDQRILFLGAGSAGIGIADLIVSAMVREGLSEEEARKKIWLVDSKGLL 71

Query: 61  VKDRPEGGVTGHKVHYAKKHA--PVKNLADVVKTVKPSILIEELKGLS 106
            KDR    +T  K  +A+K      K+L +VVK VKP++LI    GLS
Sbjct: 72  TKDR--KDLTPFKKPFARKDEEKEGKSLLEVVKAVKPTVLI----GLS 113

Malic enzyme (ME), a member of the amino acid dehydrogenase (DH)-like domain family, catalyzes the oxidative decarboxylation of L-malate to pyruvate in the presence of cations (typically Mg++ or Mn++) with the concomitant reduction of cofactor NAD+ or NADP+. ME has been found in all organisms, and plays important roles in diverse metabolic pathways such as photosynthesis and lipogenesis. This enzyme generally forms homotetramers. The conversion of malate to pyruvate by ME typically involves oxidation of malate to produce oxaloacetate, followed by decarboxylation of oxaloacetate to produce pyruvate and CO2. This subfamily consists of eukaryotic and bacterial ME. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann fold superfamily includes a wide variety of protein families including NAD(P)- binding domains of alcohol DHs, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate DH, lactate/malate DHs, formate/glycerate DHs, siroheme synthases, 6-phosphogluconate DH, amino acid DHs, repressor rex, NAD-binding potassium channel domain, CoA-binding, and ornithine cyclodeaminase-like domains. These domains have an alpha-beta-alpha configuration. NAD binding involves numerous hydrogen and van der Waals contacts. Length = 279

>gnl|CDD|133454 cd05312, NAD_bind_1_malic_enz, NAD(P) binding domain of malic enzyme (ME), subgroup 1

 Score =  134 bits (339), Expect = 6e-35
 Identities = 52/99 (52%), Positives = 64/99 (64%), Gaps = 11/99 (11%)

Query: 406 SLYTALAGIKPHQCLPITLDVGTNWRRAAAIPQVFTADILKDMAAFNKRPIIFALSNPTS 465
           SL   +  +KP   L     +G      + +   FT ++++ MA  N+RPIIFALSNPTS
Sbjct: 96  SLLEVVKAVKPT-VL-----IGL-----SGVGGAFTEEVVRAMAKSNERPIIFALSNPTS 144

Query: 466 KAECTAEQAYVNTDGRGVFASGSPFDPVTYKGKTFTPGQ 504
           KAECTAE AY  TDGR +FASGSPF PV Y GKT+ PGQ
Sbjct: 145 KAECTAEDAYKWTDGRALFASGSPFPPVEYNGKTYVPGQ 183

Malic enzyme (ME), a member of the amino acid dehydrogenase (DH)-like domain family, catalyzes the oxidative decarboxylation of L-malate to pyruvate in the presence of cations (typically Mg++ or Mn++) with the concomitant reduction of cofactor NAD+ or NADP+. ME has been found in all organisms, and plays important roles in diverse metabolic pathways such as photosynthesis and lipogenesis. This enzyme generally forms homotetramers. The conversion of malate to pyruvate by ME typically involves oxidation of malate to produce oxaloacetate, followed by decarboxylation of oxaloacetate to produce pyruvate and CO2. This subfamily consists of eukaryotic and bacterial ME. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann fold superfamily includes a wide variety of protein families including NAD(P)- binding domains of alcohol DHs, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate DH, lactate/malate DHs, formate/glycerate DHs, siroheme synthases, 6-phosphogluconate DH, amino acid DHs, repressor rex, NAD-binding potassium channel domain, CoA-binding, and ornithine cyclodeaminase-like domains. These domains have an alpha-beta-alpha configuration. NAD binding involves numerous hydrogen and van der Waals contacts. Length = 279

>gnl|CDD|133454 cd05312, NAD_bind_1_malic_enz, NAD(P) binding domain of malic enzyme (ME), subgroup 1

 Score =  134 bits (339), Expect = 7e-35
 Identities = 54/96 (56%), Positives = 67/96 (69%), Gaps = 4/96 (4%)

Query: 224 VAGLLASLRITKTRLSDNTILFQGAGEASLGIADLCVMAMQKEGTSEQDARDKIWMVDSK 283
           +AGLLA+LRIT   LSD  ILF GAG A +GIADL V AM +EG SE++AR KIW+VDSK
Sbjct: 9   LAGLLAALRITGKPLSDQRILFLGAGSAGIGIADLIVSAMVREGLSEEEARKKIWLVDSK 68

Query: 284 GLIVKDRPEGGVTGHKVHYAKKHA--PVKNLADVVK 317
           GL+ KDR    +T  K  +A+K      K+L +VVK
Sbjct: 69  GLLTKDR--KDLTPFKKPFARKDEEKEGKSLLEVVK 102

Malic enzyme (ME), a member of the amino acid dehydrogenase (DH)-like domain family, catalyzes the oxidative decarboxylation of L-malate to pyruvate in the presence of cations (typically Mg++ or Mn++) with the concomitant reduction of cofactor NAD+ or NADP+. ME has been found in all organisms, and plays important roles in diverse metabolic pathways such as photosynthesis and lipogenesis. This enzyme generally forms homotetramers. The conversion of malate to pyruvate by ME typically involves oxidation of malate to produce oxaloacetate, followed by decarboxylation of oxaloacetate to produce pyruvate and CO2. This subfamily consists of eukaryotic and bacterial ME. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann fold superfamily includes a wide variety of protein families including NAD(P)- binding domains of alcohol DHs, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate DH, lactate/malate DHs, formate/glycerate DHs, siroheme synthases, 6-phosphogluconate DH, amino acid DHs, repressor rex, NAD-binding potassium channel domain, CoA-binding, and ornithine cyclodeaminase-like domains. These domains have an alpha-beta-alpha configuration. NAD binding involves numerous hydrogen and van der Waals contacts. Length = 279

>gnl|CDD|215594 PLN03129, PLN03129, NADP-dependent malic enzyme; Provisional

 Score =  138 bits (349), Expect = 5e-34
 Identities = 60/121 (49%), Positives = 74/121 (61%), Gaps = 22/121 (18%)

Query: 406 SLYTALAGIKPHQCLPITLDVGTNWRRAAAIPQVFTADILKDMAAFNKRPIIFALSNPTS 465
           SL  A+  IKP      T+ +G      + +   FT ++L+ MA+ N+RPIIFALSNPTS
Sbjct: 392 SLLEAVKAIKP------TVLIGL-----SGVGGTFTKEVLEAMASLNERPIIFALSNPTS 440

Query: 466 KAECTAEQAYVNTDGRGVFASGSPFDPVTYKGKTFTPGQ---EYVVELMPIVYTPTVGLA 522
           KAECTAE+AY  T GR +FASGSPFDPV Y GKTF PGQ    Y+         P +GL 
Sbjct: 441 KAECTAEEAYTWTGGRAIFASGSPFDPVEYNGKTFHPGQANNAYIF--------PGIGLG 492

Query: 523 C 523
            
Sbjct: 493 A 493

Length = 581

>gnl|CDD|217809 pfam03949, Malic_M, Malic enzyme, NAD binding domain

 Score =  126 bits (320), Expect = 1e-32
 Identities = 51/109 (46%), Positives = 68/109 (62%), Gaps = 9/109 (8%)

Query: 1   LLASLRITKTRLSDNTILFQGAGEASLGIADLCVMAMQKEGTSEQDARDKIWMVDSKGLI 60
           LL +L+IT   LSD  I+F GAG A +GIA+L V AM +EG SE++AR  IWMVD KGL+
Sbjct: 12  LLNALKITGKPLSDQKIVFFGAGAAGIGIAELLVAAMVREGLSEEEARKNIWMVDRKGLL 71

Query: 61  VKDRPEGGVTGHKVHYAKKHAPVK---NLADVVKTVKPSILIEELKGLS 106
            + R +  +   K  +A+K   VK    LA+ VK  KP +LI    G+S
Sbjct: 72  TEGRED--LNPFKKPFARKTNEVKGWGTLAEAVKGAKPDVLI----GVS 114

Length = 255

>gnl|CDD|240357 PTZ00317, PTZ00317, NADP-dependent malic enzyme; Provisional

 Score =  132 bits (335), Expect = 2e-32
 Identities = 62/172 (36%), Positives = 79/172 (45%), Gaps = 61/172 (35%)

Query: 319 GMAFSIEERQALGIHGLLPAAVKSQDEQLHLCKLNVDRYEDPLNKYIYLQAL-------- 370
           G AF+ EER+ LGI GLLP  V++ ++Q+       +R E P+NKY +L+ +        
Sbjct: 31  GTAFTAEEREHLGIEGLLPPTVETLEQQVERLWTQFNRIETPINKYQFLRNIHDTNETLF 90

Query: 371 -----------------------------------------AVKTDIRAIV--------- 380
                                                    A K  IR I+         
Sbjct: 91  YALLLKYLKELLPIIYTPTVGEACQNYSNLFQRDRGLYLSRAHKGKIREILKNWPYDNVD 150

Query: 381 ---VTDGERILGLGDLGAYGMGIPVGKLSLYTALAGIKPHQCLPITLDVGTN 429
              +TDG RILGLGDLGA GMGI +GKLSLY A  GI P + LP+ LDVGTN
Sbjct: 151 VIVITDGSRILGLGDLGANGMGISIGKLSLYVAGGGINPSRVLPVVLDVGTN 202

Length = 559

>gnl|CDD|217809 pfam03949, Malic_M, Malic enzyme, NAD binding domain

 Score =  121 bits (306), Expect = 7e-31
 Identities = 46/102 (45%), Positives = 61/102 (59%), Gaps = 11/102 (10%)

Query: 403 GKLSLYTALAGIKPHQCLPITLDVGTNWRRAAAIPQVFTADILKDMAAFNKRPIIFALSN 462
           G  +L  A+ G KP       + +G      + +P VFT +I++ MA   +RPIIFALSN
Sbjct: 94  GWGTLAEAVKGAKP------DVLIG-----VSGVPGVFTEEIVRAMAEHTERPIIFALSN 142

Query: 463 PTSKAECTAEQAYVNTDGRGVFASGSPFDPVTYKGKTFTPGQ 504
           PT KAE T E+AY  T GR +FA+GSPF PV   G++  P Q
Sbjct: 143 PTPKAEITPEEAYKWTAGRALFATGSPFPPVELNGRSDYPNQ 184

Length = 255

>gnl|CDD|217809 pfam03949, Malic_M, Malic enzyme, NAD binding domain

 Score =  119 bits (300), Expect = 5e-30
 Identities = 47/97 (48%), Positives = 63/97 (64%), Gaps = 5/97 (5%)

Query: 224 VAGLLASLRITKTRLSDNTILFQGAGEASLGIADLCVMAMQKEGTSEQDARDKIWMVDSK 283
           +AGLL +L+IT   LSD  I+F GAG A +GIA+L V AM +EG SE++AR  IWMVD K
Sbjct: 9   LAGLLNALKITGKPLSDQKIVFFGAGAAGIGIAELLVAAMVREGLSEEEARKNIWMVDRK 68

Query: 284 GLIVKDRPEGGVTGHKVHYAKKHAPVK---NLADVVK 317
           GL+ + R +  +   K  +A+K   VK    LA+ VK
Sbjct: 69  GLLTEGRED--LNPFKKPFARKTNEVKGWGTLAEAVK 103

Length = 255

>gnl|CDD|215594 PLN03129, PLN03129, NADP-dependent malic enzyme; Provisional

 Score =  125 bits (315), Expect = 8e-30
 Identities = 51/107 (47%), Positives = 69/107 (64%), Gaps = 6/107 (5%)

Query: 1   LLASLRITKTRLSDNTILFQGAGEASLGIADLCVMAMQK-EGTSEQDARDKIWMVDSKGL 59
           LLA+LR T   L+D  ILF GAGEA  GIA+L  +AM +  G SE++AR +IW+VDSKGL
Sbjct: 308 LLAALRATGGDLADQRILFAGAGEAGTGIAELIALAMSRQTGISEEEARKRIWLVDSKGL 367

Query: 60  IVKDRPEGGVTGHKVHYAKKHAPVKNLADVVKTVKPSILIEELKGLS 106
           + K R +  +   K  +A  H P  +L + VK +KP++LI    GLS
Sbjct: 368 VTKSRKD-SLQPFKKPFAHDHEPGASLLEAVKAIKPTVLI----GLS 409

Length = 581

>gnl|CDD|237414 PRK13529, PRK13529, malate dehydrogenase; Provisional

 Score =  123 bits (312), Expect = 2e-29
 Identities = 41/59 (69%), Positives = 46/59 (77%)

Query: 371 AVKTDIRAIVVTDGERILGLGDLGAYGMGIPVGKLSLYTALAGIKPHQCLPITLDVGTN 429
           A   DI+ IVVTDGERILG+GD G  GMGIP+GKLSLYTA  GI P + LP+ LDVGTN
Sbjct: 142 APNRDIKLIVVTDGERILGIGDQGIGGMGIPIGKLSLYTACGGIDPARTLPVVLDVGTN 200

Length = 563

>gnl|CDD|215894 pfam00390, malic, Malic enzyme, N-terminal domain

 Score =  115 bits (290), Expect = 2e-29
 Identities = 41/59 (69%), Positives = 45/59 (76%)

Query: 371 AVKTDIRAIVVTDGERILGLGDLGAYGMGIPVGKLSLYTALAGIKPHQCLPITLDVGTN 429
             + D+R IVVTDGERILGLGDLG  GM I  GKL+LYTA AGI P + LPI LDVGTN
Sbjct: 62  WPEEDVRVIVVTDGERILGLGDLGVAGMPIMEGKLALYTAFAGIDPSRVLPIVLDVGTN 120

Length = 182

>gnl|CDD|215594 PLN03129, PLN03129, NADP-dependent malic enzyme; Provisional

 Score =  123 bits (311), Expect = 3e-29
 Identities = 40/57 (70%), Positives = 46/57 (80%)

Query: 373 KTDIRAIVVTDGERILGLGDLGAYGMGIPVGKLSLYTALAGIKPHQCLPITLDVGTN 429
           + D++ IVVTDGERILGLGDLG  GMGIPVGKL LYTA  GI+P   LP+ +DVGTN
Sbjct: 169 ERDVQVIVVTDGERILGLGDLGVQGMGIPVGKLDLYTAAGGIRPSAVLPVCIDVGTN 225

Length = 581

>gnl|CDD|237414 PRK13529, PRK13529, malate dehydrogenase; Provisional

 Score =  121 bits (306), Expect = 1e-28
 Identities = 46/108 (42%), Positives = 65/108 (60%), Gaps = 11/108 (10%)

Query: 1   LLASLRITKTRLSDNTILFQGAGEASLGIADLCVMAMQKEGTSEQDARDKIWMVDSKGLI 60
           LLA+L+IT   LSD  I+F GAG A  GIAD  V AM +EG SE++AR + +MVD +GL+
Sbjct: 282 LLAALKITGEPLSDQRIVFLGAGSAGCGIADQIVAAMVREGLSEEEARKRFFMVDRQGLL 341

Query: 61  VKDRPEGGVTGHKVHYAKKHAPVKN---------LADVVKTVKPSILI 99
             D P   +   +  YA+K   + +         L +VV+ VKP++LI
Sbjct: 342 TDDMP--DLLDFQKPYARKREELADWDTEGDVISLLEVVRNVKPTVLI 387

Length = 563

>gnl|CDD|215594 PLN03129, PLN03129, NADP-dependent malic enzyme; Provisional

 Score =  119 bits (300), Expect = 6e-28
 Identities = 49/108 (45%), Positives = 65/108 (60%), Gaps = 11/108 (10%)

Query: 220 CVND---------VAGLLASLRITKTRLSDNTILFQGAGEASLGIADLCVMAMQK-EGTS 269
           C ND         +AGLLA+LR T   L+D  ILF GAGEA  GIA+L  +AM +  G S
Sbjct: 292 CFNDDIQGTAAVALAGLLAALRATGGDLADQRILFAGAGEAGTGIAELIALAMSRQTGIS 351

Query: 270 EQDARDKIWMVDSKGLIVKDRPEGGVTGHKVHYAKKHAPVKNLADVVK 317
           E++AR +IW+VDSKGL+ K R +  +   K  +A  H P  +L + VK
Sbjct: 352 EEEARKRIWLVDSKGLVTKSRKD-SLQPFKKPFAHDHEPGASLLEAVK 398

Length = 581

>gnl|CDD|133442 cd00762, NAD_bind_malic_enz, NAD(P) binding domain of malic enzyme

 Score =  112 bits (281), Expect = 1e-27
 Identities = 41/72 (56%), Positives = 53/72 (73%)

Query: 433 AAAIPQVFTADILKDMAAFNKRPIIFALSNPTSKAECTAEQAYVNTDGRGVFASGSPFDP 492
            + +   FT ++++  A  N+RP+IFALSNPTSKAECTAE+AY  T+GR +FASGSPF P
Sbjct: 113 VSRVGGAFTPEVIRAXAEINERPVIFALSNPTSKAECTAEEAYTATEGRAIFASGSPFHP 172

Query: 493 VTYKGKTFTPGQ 504
           V   G T+ PGQ
Sbjct: 173 VELNGGTYKPGQ 184

Malic enzyme (ME), a member of the amino acid dehydrogenase (DH)-like domain family, catalyzes the oxidative decarboxylation of L-malate to pyruvate in the presence of cations (typically Mg++ or Mn++) with the concomitant reduction of cofactor NAD+ or NADP+. ME has been found in all organisms and plays important roles in diverse metabolic pathways such as photosynthesis and lipogenesis. This enzyme generally forms homotetramers. The conversion of malate to pyruvate by ME typically involves oxidation of malate to produce oxaloacetate, followed by decarboxylation of oxaloacetate to produce pyruvate and CO2. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann fold superfamily includes a wide variety of protein families including NAD(P)- binding domains of alcohol DHs, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate DH, lactate/malate DHs, formate/glycerate DHs, siroheme synthases, 6-phosphogluconate DH, amino acid DHs, repressor rex, NAD-binding potassium channel domain, CoA-binding, and ornithine cyclodeaminase-like domains. These domains have an alpha-beta-alpha configuration. NAD binding involves numerous hydrogen and van der Waals contacts. Length = 254

>gnl|CDD|237414 PRK13529, PRK13529, malate dehydrogenase; Provisional

 Score =  117 bits (295), Expect = 2e-27
 Identities = 40/68 (58%), Positives = 48/68 (70%)

Query: 437 PQVFTADILKDMAAFNKRPIIFALSNPTSKAECTAEQAYVNTDGRGVFASGSPFDPVTYK 496
           P  FT +I+K+MAA  +RPIIF LSNPTS+AE T E     TDGR + A+GSPF PV Y 
Sbjct: 393 PGAFTEEIVKEMAAHCERPIIFPLSNPTSRAEATPEDLIAWTDGRALVATGSPFAPVEYN 452

Query: 497 GKTFTPGQ 504
           GKT+  GQ
Sbjct: 453 GKTYPIGQ 460

Length = 563

>gnl|CDD|240357 PTZ00317, PTZ00317, NADP-dependent malic enzyme; Provisional

 Score =  117 bits (295), Expect = 2e-27
 Identities = 50/94 (53%), Positives = 59/94 (62%), Gaps = 11/94 (11%)

Query: 434 AAIPQVFTADILKDMAAFNKRPIIFALSNPTSKAECTAEQAYVNTDGRGVFASGSPFDPV 493
           + +  VFT +++K MA+  +RPIIF LSNPTSKAECTAE AY  T+GR + ASGSPF PV
Sbjct: 389 SGVGGVFTEEVVKTMASNVERPIIFPLSNPTSKAECTAEDAYKWTNGRAIVASGSPFPPV 448

Query: 494 TYKGKTFTPGQE---YVVELMPIVYTPTVGLACQ 524
           T  GKT  P Q    YV         P VGL C 
Sbjct: 449 TLNGKTIQPSQGNNLYVF--------PGVGLGCA 474

Length = 559

>gnl|CDD|133454 cd05312, NAD_bind_1_malic_enz, NAD(P) binding domain of malic enzyme (ME), subgroup 1

 Score =  109 bits (276), Expect = 2e-26
 Identities = 44/82 (53%), Positives = 57/82 (69%), Gaps = 4/82 (4%)

Query: 142 ASLGIADLCVMAMQKEGTSEQDARDKIWMVDSKGLIVKDRPEGGVTGHKVHYAKKHA--P 199
           A +GIADL V AM +EG SE++AR KIW+VDSKGL+ KDR    +T  K  +A+K     
Sbjct: 36  AGIGIADLIVSAMVREGLSEEEARKKIWLVDSKGLLTKDR--KDLTPFKKPFARKDEEKE 93

Query: 200 VKNLADVVKTVKPSILIGESCV 221
            K+L +VVK VKP++LIG S V
Sbjct: 94  GKSLLEVVKAVKPTVLIGLSGV 115

Malic enzyme (ME), a member of the amino acid dehydrogenase (DH)-like domain family, catalyzes the oxidative decarboxylation of L-malate to pyruvate in the presence of cations (typically Mg++ or Mn++) with the concomitant reduction of cofactor NAD+ or NADP+. ME has been found in all organisms, and plays important roles in diverse metabolic pathways such as photosynthesis and lipogenesis. This enzyme generally forms homotetramers. The conversion of malate to pyruvate by ME typically involves oxidation of malate to produce oxaloacetate, followed by decarboxylation of oxaloacetate to produce pyruvate and CO2. This subfamily consists of eukaryotic and bacterial ME. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann fold superfamily includes a wide variety of protein families including NAD(P)- binding domains of alcohol DHs, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate DH, lactate/malate DHs, formate/glycerate DHs, siroheme synthases, 6-phosphogluconate DH, amino acid DHs, repressor rex, NAD-binding potassium channel domain, CoA-binding, and ornithine cyclodeaminase-like domains. These domains have an alpha-beta-alpha configuration. NAD binding involves numerous hydrogen and van der Waals contacts. Length = 279

>gnl|CDD|237414 PRK13529, PRK13529, malate dehydrogenase; Provisional

 Score =  112 bits (283), Expect = 1e-25
 Identities = 45/117 (38%), Positives = 63/117 (53%), Gaps = 20/117 (17%)

Query: 220 CVND---------VAGLLASLRITKTRLSDNTILFQGAGEASLGIADLCVMAMQKEGTSE 270
             ND         +AGLLA+L+IT   LSD  I+F GAG A  GIAD  V AM +EG SE
Sbjct: 266 TFNDDIQGTGAVTLAGLLAALKITGEPLSDQRIVFLGAGSAGCGIADQIVAAMVREGLSE 325

Query: 271 QDARDKIWMVDSKGLIVKDRPEGGVTGHKVHYAKKHAPVKN---------LADVVKT 318
           ++AR + +MVD +GL+  D P   +   +  YA+K   + +         L +VV+ 
Sbjct: 326 EEARKRFFMVDRQGLLTDDMP--DLLDFQKPYARKREELADWDTEGDVISLLEVVRN 380

Length = 563

>gnl|CDD|133442 cd00762, NAD_bind_malic_enz, NAD(P) binding domain of malic enzyme

 Score =  103 bits (259), Expect = 1e-24
 Identities = 44/102 (43%), Positives = 65/102 (63%), Gaps = 5/102 (4%)

Query: 1   LLASLRITKTRLSDNTILFQGAGEASLGIADLCVMAMQKEGTSEQDARDKIWMVDSKGLI 60
           LLA+L++TK ++S++ +LF GAG A+LGIA+L V    KEG S+++A  +IW VD KGL+
Sbjct: 12  LLAALKVTKKKISEHKVLFNGAGAAALGIANLIVXLXVKEGISKEEACKRIWXVDRKGLL 71

Query: 61  VKDRPEGGVTGHKVH---YAKKHAPVKNLADVVKTVKPSILI 99
           VK+R E     ++ H   +A       +L D V+  KP  LI
Sbjct: 72  VKNRKE--TCPNEYHLARFANPERESGDLEDAVEAAKPDFLI 111

Malic enzyme (ME), a member of the amino acid dehydrogenase (DH)-like domain family, catalyzes the oxidative decarboxylation of L-malate to pyruvate in the presence of cations (typically Mg++ or Mn++) with the concomitant reduction of cofactor NAD+ or NADP+. ME has been found in all organisms and plays important roles in diverse metabolic pathways such as photosynthesis and lipogenesis. This enzyme generally forms homotetramers. The conversion of malate to pyruvate by ME typically involves oxidation of malate to produce oxaloacetate, followed by decarboxylation of oxaloacetate to produce pyruvate and CO2. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann fold superfamily includes a wide variety of protein families including NAD(P)- binding domains of alcohol DHs, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate DH, lactate/malate DHs, formate/glycerate DHs, siroheme synthases, 6-phosphogluconate DH, amino acid DHs, repressor rex, NAD-binding potassium channel domain, CoA-binding, and ornithine cyclodeaminase-like domains. These domains have an alpha-beta-alpha configuration. NAD binding involves numerous hydrogen and van der Waals contacts. Length = 254

>gnl|CDD|214912 smart00919, Malic_M, Malic enzyme, NAD binding domain

 Score =  103 bits (259), Expect = 1e-24
 Identities = 38/96 (39%), Positives = 52/96 (54%), Gaps = 11/96 (11%)

Query: 224 VAGLLASLRITKTRLSDNTILFQGAGEASLGIADLCVMAMQKEGTSEQDARDKIWMVDSK 283
           +AGLL +L+IT  +L D  I+  GAG A +GIA L V A  K        R  IW+VDSK
Sbjct: 9   LAGLLNALKITGKKLEDQRIVVNGAGAAGIGIAKLLVAAGVK--------RKNIWLVDSK 60

Query: 284 GLIVKDRPEGGVTGHKVHYAKK--HAPVKNLADVVK 317
           GL+ K R +  +  +K  +A+K        L + VK
Sbjct: 61  GLLTKGRED-NLNPYKKPFARKTNERETGTLEEAVK 95

Malic enzymes (malate oxidoreductases) catalyse the oxidative decarboxylation of malate to form pyruvate. Length = 231

>gnl|CDD|214912 smart00919, Malic_M, Malic enzyme, NAD binding domain

 Score =  103 bits (259), Expect = 1e-24
 Identities = 40/108 (37%), Positives = 55/108 (50%), Gaps = 17/108 (15%)

Query: 1   LLASLRITKTRLSDNTILFQGAGEASLGIADLCVMAMQKEGTSEQDARDKIWMVDSKGLI 60
           LL +L+IT  +L D  I+  GAG A +GIA L V A  K        R  IW+VDSKGL+
Sbjct: 12  LLNALKITGKKLEDQRIVVNGAGAAGIGIAKLLVAAGVK--------RKNIWLVDSKGLL 63

Query: 61  VKDRPEGGVTGHKVHYAKK--HAPVKNLADVVKTVKPSILIEELKGLS 106
            K R +  +  +K  +A+K        L + VK     +LI    G+S
Sbjct: 64  TKGRED-NLNPYKKPFARKTNERETGTLEEAVK--GADVLI----GVS 104

Malic enzymes (malate oxidoreductases) catalyse the oxidative decarboxylation of malate to form pyruvate. Length = 231

>gnl|CDD|133442 cd00762, NAD_bind_malic_enz, NAD(P) binding domain of malic enzyme

 Score =  100 bits (251), Expect = 1e-23
 Identities = 43/97 (44%), Positives = 64/97 (65%), Gaps = 5/97 (5%)

Query: 224 VAGLLASLRITKTRLSDNTILFQGAGEASLGIADLCVMAMQKEGTSEQDARDKIWMVDSK 283
           VAGLLA+L++TK ++S++ +LF GAG A+LGIA+L V    KEG S+++A  +IW VD K
Sbjct: 9   VAGLLAALKVTKKKISEHKVLFNGAGAAALGIANLIVXLXVKEGISKEEACKRIWXVDRK 68

Query: 284 GLIVKDRPEGGVTGHKVH---YAKKHAPVKNLADVVK 317
           GL+VK+R E     ++ H   +A       +L D V+
Sbjct: 69  GLLVKNRKE--TCPNEYHLARFANPERESGDLEDAVE 103

Malic enzyme (ME), a member of the amino acid dehydrogenase (DH)-like domain family, catalyzes the oxidative decarboxylation of L-malate to pyruvate in the presence of cations (typically Mg++ or Mn++) with the concomitant reduction of cofactor NAD+ or NADP+. ME has been found in all organisms and plays important roles in diverse metabolic pathways such as photosynthesis and lipogenesis. This enzyme generally forms homotetramers. The conversion of malate to pyruvate by ME typically involves oxidation of malate to produce oxaloacetate, followed by decarboxylation of oxaloacetate to produce pyruvate and CO2. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann fold superfamily includes a wide variety of protein families including NAD(P)- binding domains of alcohol DHs, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate DH, lactate/malate DHs, formate/glycerate DHs, siroheme synthases, 6-phosphogluconate DH, amino acid DHs, repressor rex, NAD-binding potassium channel domain, CoA-binding, and ornithine cyclodeaminase-like domains. These domains have an alpha-beta-alpha configuration. NAD binding involves numerous hydrogen and van der Waals contacts. Length = 254

>gnl|CDD|217809 pfam03949, Malic_M, Malic enzyme, NAD binding domain

 Score = 98.4 bits (246), Expect = 7e-23
 Identities = 40/86 (46%), Positives = 53/86 (61%), Gaps = 5/86 (5%)

Query: 142 ASLGIADLCVMAMQKEGTSEQDARDKIWMVDSKGLIVKDRPEGGVTGHKVHYAKKHAPVK 201
           A +GIA+L V AM +EG SE++AR  IWMVD KGL+ + R +  +   K  +A+K   VK
Sbjct: 36  AGIGIAELLVAAMVREGLSEEEARKNIWMVDRKGLLTEGRED--LNPFKKPFARKTNEVK 93

Query: 202 ---NLADVVKTVKPSILIGESCVNDV 224
               LA+ VK  KP +LIG S V  V
Sbjct: 94  GWGTLAEAVKGAKPDVLIGVSGVPGV 119

Length = 255

>gnl|CDD|215594 PLN03129, PLN03129, NADP-dependent malic enzyme; Provisional

 Score = 94.6 bits (236), Expect = 5e-20
 Identities = 36/81 (44%), Positives = 52/81 (64%), Gaps = 2/81 (2%)

Query: 142 ASLGIADLCVMAMQK-EGTSEQDARDKIWMVDSKGLIVKDRPEGGVTGHKVHYAKKHAPV 200
           A  GIA+L  +AM +  G SE++AR +IW+VDSKGL+ K R +  +   K  +A  H P 
Sbjct: 332 AGTGIAELIALAMSRQTGISEEEARKRIWLVDSKGLVTKSRKD-SLQPFKKPFAHDHEPG 390

Query: 201 KNLADVVKTVKPSILIGESCV 221
            +L + VK +KP++LIG S V
Sbjct: 391 ASLLEAVKAIKPTVLIGLSGV 411

Length = 581

>gnl|CDD|237414 PRK13529, PRK13529, malate dehydrogenase; Provisional

 Score = 92.5 bits (231), Expect = 2e-19
 Identities = 34/87 (39%), Positives = 50/87 (57%), Gaps = 11/87 (12%)

Query: 142 ASLGIADLCVMAMQKEGTSEQDARDKIWMVDSKGLIVKDRPEGGVTGHKVHYAKKHAPVK 201
           A  GIAD  V AM +EG SE++AR + +MVD +GL+  D P   +   +  YA+K   + 
Sbjct: 306 AGCGIADQIVAAMVREGLSEEEARKRFFMVDRQGLLTDDMP--DLLDFQKPYARKREELA 363

Query: 202 N---------LADVVKTVKPSILIGES 219
           +         L +VV+ VKP++LIG S
Sbjct: 364 DWDTEGDVISLLEVVRNVKPTVLIGVS 390

Length = 563

>gnl|CDD|240357 PTZ00317, PTZ00317, NADP-dependent malic enzyme; Provisional

 Score = 89.7 bits (223), Expect = 2e-18
 Identities = 35/111 (31%), Positives = 60/111 (54%), Gaps = 10/111 (9%)

Query: 1   LLASLRITKTRLSDNTILFQGAGEASLGIADLCVMAMQKEGTSEQDARDKIWMVDSKGLI 60
            L +L+++     +  I+F GAG A++G+A+       + G + ++A    ++VDSKGL+
Sbjct: 284 FLNALKLSGVPPEEQRIVFFGAGSAAIGVANNIADLAAEYGVTREEALKSFYLVDSKGLV 343

Query: 61  VKDRPEGGVTGHKVHYAKKHAP-----VKNLADVVKTVKPSILIEELKGLS 106
              R +  +  HKV +A+         +K L DVV+ VKP+ L+    GLS
Sbjct: 344 TTTRGD-KLAKHKVPFARTDISAEDSSLKTLEDVVRFVKPTALL----GLS 389

Length = 559

>gnl|CDD|214912 smart00919, Malic_M, Malic enzyme, NAD binding domain

 Score = 79.4 bits (197), Expect = 1e-16
 Identities = 25/60 (41%), Positives = 33/60 (55%), Gaps = 5/60 (8%)

Query: 433 AAAIPQVFTADILKDMAAFNKRPIIFALSNPTSKAECTAEQAYVNTDGRGVFASGSPFDP 492
            +     FT +++K MA   +RPIIFALSNPT + E TA  AY  T    + A+G    P
Sbjct: 103 VSGPGGAFTEEMVKSMA---ERPIIFALSNPTPEIEPTAADAYRWTA--AIVATGRSDYP 157

Malic enzymes (malate oxidoreductases) catalyse the oxidative decarboxylation of malate to form pyruvate. Length = 231

>gnl|CDD|240357 PTZ00317, PTZ00317, NADP-dependent malic enzyme; Provisional

 Score = 82.8 bits (205), Expect = 3e-16
 Identities = 33/112 (29%), Positives = 56/112 (50%), Gaps = 15/112 (13%)

Query: 220 CVND---------VAGLLASLRITKTRLSDNTILFQGAGEASLGIADLCVMAMQKEGTSE 270
           C ND          AG L +L+++     +  I+F GAG A++G+A+       + G + 
Sbjct: 268 CFNDDIQGTGAVIAAGFLNALKLSGVPPEEQRIVFFGAGSAAIGVANNIADLAAEYGVTR 327

Query: 271 QDARDKIWMVDSKGLIVKDRPEGGVTGHKVHYAKKHAP-----VKNLADVVK 317
           ++A    ++VDSKGL+   R +  +  HKV +A+         +K L DVV+
Sbjct: 328 EEALKSFYLVDSKGLVTTTRGD-KLAKHKVPFARTDISAEDSSLKTLEDVVR 378

Length = 559

>gnl|CDD|223358 COG0281, SfcA, Malic enzyme [Energy production and conversion]

 Score = 76.5 bits (189), Expect = 2e-14
 Identities = 27/52 (51%), Positives = 32/52 (61%), Gaps = 4/52 (7%)

Query: 379 IVVTDGERILGLGDLGAY-GMGIPVGKLSLYTALAGIKPHQCLPITLDVGTN 429
            VVTDG  +LGLG++G   G  +  GK  L+ A AGI     LPI LDVGTN
Sbjct: 80  AVVTDGTAVLGLGNIGPLAGKPVMEGKAVLFKAFAGID---VLPIELDVGTN 128

Length = 432

>gnl|CDD|133442 cd00762, NAD_bind_malic_enz, NAD(P) binding domain of malic enzyme

 Score = 73.8 bits (181), Expect = 2e-14
 Identities = 35/83 (42%), Positives = 48/83 (57%), Gaps = 5/83 (6%)

Query: 142 ASLGIADLCVMAMQKEGTSEQDARDKIWMVDSKGLIVKDRPEGGVTGHKVH---YAKKHA 198
           A+LGIA+L V    KEG S+++A  +IW VD KGL+VK+R E     ++ H   +A    
Sbjct: 36  AALGIANLIVXLXVKEGISKEEACKRIWXVDRKGLLVKNRKE--TCPNEYHLARFANPER 93

Query: 199 PVKNLADVVKTVKPSILIGESCV 221
              +L D V+  KP  LIG S V
Sbjct: 94  ESGDLEDAVEAAKPDFLIGVSRV 116

Malic enzyme (ME), a member of the amino acid dehydrogenase (DH)-like domain family, catalyzes the oxidative decarboxylation of L-malate to pyruvate in the presence of cations (typically Mg++ or Mn++) with the concomitant reduction of cofactor NAD+ or NADP+. ME has been found in all organisms and plays important roles in diverse metabolic pathways such as photosynthesis and lipogenesis. This enzyme generally forms homotetramers. The conversion of malate to pyruvate by ME typically involves oxidation of malate to produce oxaloacetate, followed by decarboxylation of oxaloacetate to produce pyruvate and CO2. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann fold superfamily includes a wide variety of protein families including NAD(P)- binding domains of alcohol DHs, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate DH, lactate/malate DHs, formate/glycerate DHs, siroheme synthases, 6-phosphogluconate DH, amino acid DHs, repressor rex, NAD-binding potassium channel domain, CoA-binding, and ornithine cyclodeaminase-like domains. These domains have an alpha-beta-alpha configuration. NAD binding involves numerous hydrogen and van der Waals contacts. Length = 254

>gnl|CDD|214912 smart00919, Malic_M, Malic enzyme, NAD binding domain

 Score = 72.4 bits (179), Expect = 3e-14
 Identities = 29/85 (34%), Positives = 39/85 (45%), Gaps = 13/85 (15%)

Query: 142 ASLGIADLCVMAMQKEGTSEQDARDKIWMVDSKGLIVKDRPEGGVTGHKVHYAKK--HAP 199
           A +GIA L V A  K        R  IW+VDSKGL+ K R +  +  +K  +A+K     
Sbjct: 36  AGIGIAKLLVAAGVK--------RKNIWLVDSKGLLTKGRED-NLNPYKKPFARKTNERE 86

Query: 200 VKNLADVVKTVKPSILIGESCVNDV 224
              L + VK     +LIG S     
Sbjct: 87  TGTLEEAVK--GADVLIGVSGPGGA 109

Malic enzymes (malate oxidoreductases) catalyse the oxidative decarboxylation of malate to form pyruvate. Length = 231

>gnl|CDD|237414 PRK13529, PRK13529, malate dehydrogenase; Provisional

 Score = 72.9 bits (180), Expect = 3e-13
 Identities = 23/32 (71%), Positives = 29/32 (90%)

Query: 817 DRNERLFYRLLSEYVVELMPIVYTPTVGLACQ 848
           DRNE LFYRLLS+++ E+MPI+YTPTVG AC+
Sbjct: 82  DRNETLFYRLLSDHLEEMMPIIYTPTVGEACE 113

Length = 563

>gnl|CDD|240357 PTZ00317, PTZ00317, NADP-dependent malic enzyme; Provisional

 Score = 72.7 bits (179), Expect = 3e-13
 Identities = 28/85 (32%), Positives = 47/85 (55%), Gaps = 6/85 (7%)

Query: 142 ASLGIADLCVMAMQKEGTSEQDARDKIWMVDSKGLIVKDRPEGGVTGHKVHYAKKHAP-- 199
           A++G+A+       + G + ++A    ++VDSKGL+   R +  +  HKV +A+      
Sbjct: 308 AAIGVANNIADLAAEYGVTREEALKSFYLVDSKGLVTTTRGD-KLAKHKVPFARTDISAE 366

Query: 200 ---VKNLADVVKTVKPSILIGESCV 221
              +K L DVV+ VKP+ L+G S V
Sbjct: 367 DSSLKTLEDVVRFVKPTALLGLSGV 391

Length = 559

>gnl|CDD|223358 COG0281, SfcA, Malic enzyme [Energy production and conversion]

 Score = 71.5 bits (176), Expect = 5e-13
 Identities = 30/94 (31%), Positives = 45/94 (47%), Gaps = 8/94 (8%)

Query: 224 VAGLLASLRITKTRLSDNTILFQGAGEASLGIADLCVMAMQKEGTSEQDARDKIWMVDSK 283
           +A LL +L++T  +L D  I+  GAG A + IADL V A  KE          I++VD K
Sbjct: 183 LAALLNALKLTGKKLKDQKIVINGAGAAGIAIADLLVAAGVKEE--------NIFVVDRK 234

Query: 284 GLIVKDRPEGGVTGHKVHYAKKHAPVKNLADVVK 317
           GL+   R +  +   K   A +    + L   + 
Sbjct: 235 GLLYDGREDLTMNQKKYAKAIEDTGERTLDLALA 268

Length = 432

>gnl|CDD|215594 PLN03129, PLN03129, NADP-dependent malic enzyme; Provisional

 Score = 71.5 bits (176), Expect = 9e-13
 Identities = 23/32 (71%), Positives = 28/32 (87%)

Query: 817 DRNERLFYRLLSEYVVELMPIVYTPTVGLACQ 848
           +RNERLFYR+L + + EL+PIVYTPTVG ACQ
Sbjct: 107 ERNERLFYRVLIDNIEELLPIVYTPTVGEACQ 138

Length = 581

>gnl|CDD|223358 COG0281, SfcA, Malic enzyme [Energy production and conversion]

 Score = 69.9 bits (172), Expect = 2e-12
 Identities = 33/106 (31%), Positives = 49/106 (46%), Gaps = 14/106 (13%)

Query: 1   LLASLRITKTRLSDNTILFQGAGEASLGIADLCVMAMQKEGTSEQDARDKIWMVDSKGLI 60
           LL +L++T  +L D  I+  GAG A + IADL V A  KE          I++VD KGL+
Sbjct: 186 LLNALKLTGKKLKDQKIVINGAGAAGIAIADLLVAAGVKEE--------NIFVVDRKGLL 237

Query: 61  VKDRPEGGVTGHKVHYAKKHAPVKNLADVVKTVKPSILIEELKGLS 106
              R +  +   K   A +    + L   +      +LI    G+S
Sbjct: 238 YDGREDLTMNQKKYAKAIEDTGERTLDLAL--AGADVLI----GVS 277

Length = 432

>gnl|CDD|237414 PRK13529, PRK13529, malate dehydrogenase; Provisional

 Score = 69.8 bits (172), Expect = 3e-12
 Identities = 21/52 (40%), Positives = 29/52 (55%)

Query: 319 GMAFSIEERQALGIHGLLPAAVKSQDEQLHLCKLNVDRYEDPLNKYIYLQAL 370
           G AF+ EER+  G+ GLLP AV++ +EQ              L K+IYL+ L
Sbjct: 29  GTAFTEEEREEFGLEGLLPPAVETLEEQAERAYRQYQSKPTDLEKHIYLRNL 80

Length = 563

>gnl|CDD|215894 pfam00390, malic, Malic enzyme, N-terminal domain

 Score = 65.7 bits (161), Expect = 3e-12
 Identities = 21/32 (65%), Positives = 26/32 (81%)

Query: 817 DRNERLFYRLLSEYVVELMPIVYTPTVGLACQ 848
            +NE LFY+LLS ++ E +PIVYTPTVG ACQ
Sbjct: 2   GKNEVLFYKLLSTHIEEDLPIVYTPTVGEACQ 33

Length = 182

>gnl|CDD|133454 cd05312, NAD_bind_1_malic_enz, NAD(P) binding domain of malic enzyme (ME), subgroup 1

 Score = 67.6 bits (166), Expect = 3e-12
 Identities = 31/57 (54%), Positives = 39/57 (68%), Gaps = 3/57 (5%)

Query: 683 IQGTASVAVAGLLASLRITKTRLSDNTILFQGAGEGTASVAVAGLLASLRITKTRLS 739
           IQGTA+VA+AGLLA+LRIT   LSD  ILF GAG   A + +A L+ S  + +  LS
Sbjct: 1   IQGTAAVALAGLLAALRITGKPLSDQRILFLGAGS--AGIGIADLIVSA-MVREGLS 54

Malic enzyme (ME), a member of the amino acid dehydrogenase (DH)-like domain family, catalyzes the oxidative decarboxylation of L-malate to pyruvate in the presence of cations (typically Mg++ or Mn++) with the concomitant reduction of cofactor NAD+ or NADP+. ME has been found in all organisms, and plays important roles in diverse metabolic pathways such as photosynthesis and lipogenesis. This enzyme generally forms homotetramers. The conversion of malate to pyruvate by ME typically involves oxidation of malate to produce oxaloacetate, followed by decarboxylation of oxaloacetate to produce pyruvate and CO2. This subfamily consists of eukaryotic and bacterial ME. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann fold superfamily includes a wide variety of protein families including NAD(P)- binding domains of alcohol DHs, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate DH, lactate/malate DHs, formate/glycerate DHs, siroheme synthases, 6-phosphogluconate DH, amino acid DHs, repressor rex, NAD-binding potassium channel domain, CoA-binding, and ornithine cyclodeaminase-like domains. These domains have an alpha-beta-alpha configuration. NAD binding involves numerous hydrogen and van der Waals contacts. Length = 279

>gnl|CDD|217809 pfam03949, Malic_M, Malic enzyme, NAD binding domain

 Score = 64.9 bits (159), Expect = 2e-11
 Identities = 25/48 (52%), Positives = 33/48 (68%), Gaps = 2/48 (4%)

Query: 683 IQGTASVAVAGLLASLRITKTRLSDNTILFQGAGEGTASVAVAGLLAS 730
           IQGTA+V +AGLL +L+IT   LSD  I+F GA  G A + +A LL +
Sbjct: 1   IQGTAAVVLAGLLNALKITGKPLSDQKIVFFGA--GAAGIGIAELLVA 46

Length = 255

>gnl|CDD|214912 smart00919, Malic_M, Malic enzyme, NAD binding domain

 Score = 64.7 bits (159), Expect = 2e-11
 Identities = 22/56 (39%), Positives = 33/56 (58%), Gaps = 2/56 (3%)

Query: 683 IQGTASVAVAGLLASLRITKTRLSDNTILFQGAGEGTASVAVAGLLASLRITKTRL 738
            QGTA V +AGLL +L+IT  +L D  I+  GAG   A + +A LL +  + +  +
Sbjct: 1   QQGTAIVVLAGLLNALKITGKKLEDQRIVVNGAGA--AGIGIAKLLVAAGVKRKNI 54

Malic enzymes (malate oxidoreductases) catalyse the oxidative decarboxylation of malate to form pyruvate. Length = 231

>gnl|CDD|133454 cd05312, NAD_bind_1_malic_enz, NAD(P) binding domain of malic enzyme (ME), subgroup 1

 Score = 62.6 bits (153), Expect = 1e-10
 Identities = 30/56 (53%), Positives = 38/56 (67%), Gaps = 3/56 (5%)

Query: 717 EGTASVAVAGLLASLRITKTRLSDNTILFQGAGEGTASVAIAGLLASLRITKTRLS 772
           +GTA+VA+AGLLA+LRIT   LSD  ILF GAG   A + IA L+ S  + +  LS
Sbjct: 2   QGTAAVALAGLLAALRITGKPLSDQRILFLGAGS--AGIGIADLIVSA-MVREGLS 54

Malic enzyme (ME), a member of the amino acid dehydrogenase (DH)-like domain family, catalyzes the oxidative decarboxylation of L-malate to pyruvate in the presence of cations (typically Mg++ or Mn++) with the concomitant reduction of cofactor NAD+ or NADP+. ME has been found in all organisms, and plays important roles in diverse metabolic pathways such as photosynthesis and lipogenesis. This enzyme generally forms homotetramers. The conversion of malate to pyruvate by ME typically involves oxidation of malate to produce oxaloacetate, followed by decarboxylation of oxaloacetate to produce pyruvate and CO2. This subfamily consists of eukaryotic and bacterial ME. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann fold superfamily includes a wide variety of protein families including NAD(P)- binding domains of alcohol DHs, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate DH, lactate/malate DHs, formate/glycerate DHs, siroheme synthases, 6-phosphogluconate DH, amino acid DHs, repressor rex, NAD-binding potassium channel domain, CoA-binding, and ornithine cyclodeaminase-like domains. These domains have an alpha-beta-alpha configuration. NAD binding involves numerous hydrogen and van der Waals contacts. Length = 279

>gnl|CDD|214912 smart00919, Malic_M, Malic enzyme, NAD binding domain

 Score = 61.7 bits (151), Expect = 2e-10
 Identities = 22/54 (40%), Positives = 32/54 (59%), Gaps = 2/54 (3%)

Query: 718 GTASVAVAGLLASLRITKTRLSDNTILFQGAGEGTASVAIAGLLASLRITKTRL 771
           GTA V +AGLL +L+IT  +L D  I+  GAG   A + IA LL +  + +  +
Sbjct: 3   GTAIVVLAGLLNALKITGKKLEDQRIVVNGAGA--AGIGIAKLLVAAGVKRKNI 54

Malic enzymes (malate oxidoreductases) catalyse the oxidative decarboxylation of malate to form pyruvate. Length = 231

>gnl|CDD|215594 PLN03129, PLN03129, NADP-dependent malic enzyme; Provisional

 Score = 63.0 bits (154), Expect = 4e-10
 Identities = 28/82 (34%), Positives = 36/82 (43%), Gaps = 6/82 (7%)

Query: 289 DRPEGGVTGHKVHYAKKHAPVKNLADVVKTGMAFSIEERQALGIHGLLPAAVKSQDEQLH 348
           ++P          Y     P  N       G+AF+  ER  LG+ GLLP AV SQ+ Q+ 
Sbjct: 30  EQPVTPWVRVASGYDLLRDPRYN------KGLAFTETERDRLGLRGLLPPAVLSQELQVK 83

Query: 349 LCKLNVDRYEDPLNKYIYLQAL 370
               N+   E PL KY  L  L
Sbjct: 84  RFMENLRALESPLAKYRALMDL 105

Length = 581

>gnl|CDD|217809 pfam03949, Malic_M, Malic enzyme, NAD binding domain

 Score = 60.7 bits (148), Expect = 5e-10
 Identities = 24/47 (51%), Positives = 32/47 (68%), Gaps = 2/47 (4%)

Query: 717 EGTASVAVAGLLASLRITKTRLSDNTILFQGAGEGTASVAIAGLLAS 763
           +GTA+V +AGLL +L+IT   LSD  I+F GA  G A + IA LL +
Sbjct: 2   QGTAAVVLAGLLNALKITGKPLSDQKIVFFGA--GAAGIGIAELLVA 46

Length = 255

>gnl|CDD|133442 cd00762, NAD_bind_malic_enz, NAD(P) binding domain of malic enzyme

 Score = 60.7 bits (147), Expect = 5e-10
 Identities = 26/46 (56%), Positives = 38/46 (82%), Gaps = 2/46 (4%)

Query: 683 IQGTASVAVAGLLASLRITKTRLSDNTILFQGAGEGTASVAVAGLL 728
           IQGTASVAVAGLLA+L++TK ++S++ +LF GAG   A++ +A L+
Sbjct: 1   IQGTASVAVAGLLAALKVTKKKISEHKVLFNGAGA--AALGIANLI 44

Malic enzyme (ME), a member of the amino acid dehydrogenase (DH)-like domain family, catalyzes the oxidative decarboxylation of L-malate to pyruvate in the presence of cations (typically Mg++ or Mn++) with the concomitant reduction of cofactor NAD+ or NADP+. ME has been found in all organisms and plays important roles in diverse metabolic pathways such as photosynthesis and lipogenesis. This enzyme generally forms homotetramers. The conversion of malate to pyruvate by ME typically involves oxidation of malate to produce oxaloacetate, followed by decarboxylation of oxaloacetate to produce pyruvate and CO2. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann fold superfamily includes a wide variety of protein families including NAD(P)- binding domains of alcohol DHs, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate DH, lactate/malate DHs, formate/glycerate DHs, siroheme synthases, 6-phosphogluconate DH, amino acid DHs, repressor rex, NAD-binding potassium channel domain, CoA-binding, and ornithine cyclodeaminase-like domains. These domains have an alpha-beta-alpha configuration. NAD binding involves numerous hydrogen and van der Waals contacts. Length = 254

>gnl|CDD|133442 cd00762, NAD_bind_malic_enz, NAD(P) binding domain of malic enzyme

 Score = 58.0 bits (140), Expect = 4e-09
 Identities = 25/45 (55%), Positives = 37/45 (82%), Gaps = 2/45 (4%)

Query: 717 EGTASVAVAGLLASLRITKTRLSDNTILFQGAGEGTASVAIAGLL 761
           +GTASVAVAGLLA+L++TK ++S++ +LF GAG   A++ IA L+
Sbjct: 2   QGTASVAVAGLLAALKVTKKKISEHKVLFNGAGA--AALGIANLI 44

Malic enzyme (ME), a member of the amino acid dehydrogenase (DH)-like domain family, catalyzes the oxidative decarboxylation of L-malate to pyruvate in the presence of cations (typically Mg++ or Mn++) with the concomitant reduction of cofactor NAD+ or NADP+. ME has been found in all organisms and plays important roles in diverse metabolic pathways such as photosynthesis and lipogenesis. This enzyme generally forms homotetramers. The conversion of malate to pyruvate by ME typically involves oxidation of malate to produce oxaloacetate, followed by decarboxylation of oxaloacetate to produce pyruvate and CO2. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann fold superfamily includes a wide variety of protein families including NAD(P)- binding domains of alcohol DHs, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate DH, lactate/malate DHs, formate/glycerate DHs, siroheme synthases, 6-phosphogluconate DH, amino acid DHs, repressor rex, NAD-binding potassium channel domain, CoA-binding, and ornithine cyclodeaminase-like domains. These domains have an alpha-beta-alpha configuration. NAD binding involves numerous hydrogen and van der Waals contacts. Length = 254

>gnl|CDD|133454 cd05312, NAD_bind_1_malic_enz, NAD(P) binding domain of malic enzyme (ME), subgroup 1

 Score = 57.6 bits (140), Expect = 6e-09
 Identities = 22/34 (64%), Positives = 27/34 (79%)

Query: 783 EGTASVAVAGVLASLRITKTRLSDNTILFQGAGE 816
           +GTA+VA+AG+LA+LRIT   LSD  ILF GAG 
Sbjct: 2   QGTAAVALAGLLAALRITGKPLSDQRILFLGAGS 35

Malic enzyme (ME), a member of the amino acid dehydrogenase (DH)-like domain family, catalyzes the oxidative decarboxylation of L-malate to pyruvate in the presence of cations (typically Mg++ or Mn++) with the concomitant reduction of cofactor NAD+ or NADP+. ME has been found in all organisms, and plays important roles in diverse metabolic pathways such as photosynthesis and lipogenesis. This enzyme generally forms homotetramers. The conversion of malate to pyruvate by ME typically involves oxidation of malate to produce oxaloacetate, followed by decarboxylation of oxaloacetate to produce pyruvate and CO2. This subfamily consists of eukaryotic and bacterial ME. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann fold superfamily includes a wide variety of protein families including NAD(P)- binding domains of alcohol DHs, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate DH, lactate/malate DHs, formate/glycerate DHs, siroheme synthases, 6-phosphogluconate DH, amino acid DHs, repressor rex, NAD-binding potassium channel domain, CoA-binding, and ornithine cyclodeaminase-like domains. These domains have an alpha-beta-alpha configuration. NAD binding involves numerous hydrogen and van der Waals contacts. Length = 279

>gnl|CDD|133453 cd05311, NAD_bind_2_malic_enz, NAD(P) binding domain of malic enzyme (ME), subgroup 2

 Score = 56.5 bits (137), Expect = 9e-09
 Identities = 30/96 (31%), Positives = 47/96 (48%), Gaps = 12/96 (12%)

Query: 225 AGLLASLRITKTRLSDNTILFQGAGEASLGIADLCVMAMQKEGTSEQDARDKIWMVDSKG 284
           AGLL +L++   ++ +  I+  GAG A + IA L + A  K         + I +VDSKG
Sbjct: 10  AGLLNALKLVGKKIEEVKIVINGAGAAGIAIARLLLAAGAK--------PENIVVVDSKG 61

Query: 285 LIVKDRPEGGVTGHKVHYAKKHAPVKN---LADVVK 317
           +I + R +      K   AK+  P K    L + +K
Sbjct: 62  VIYEGREDDLNP-DKNEIAKETNPEKTGGTLKEALK 96

Malic enzyme (ME), a member of the amino acid dehydrogenase (DH)-like domain family, catalyzes the oxidative decarboxylation of L-malate to pyruvate in the presence of cations (typically Mg++ or Mn++) with the concomitant reduction of cofactor NAD+ or NADP+. ME has been found in all organisms, and plays important roles in diverse metabolic pathways such as photosynthesis and lipogenesis. This enzyme generally forms homotetramers. The conversion of malate to pyruvate by ME typically involves oxidation of malate to produce oxaloacetate, followed by decarboxylation of oxaloacetate to produce pyruvate and CO2. This subfamily consists primarily of archaeal and bacterial ME. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann fold superfamily includes a wide variety of protein families including NAD(P)- binding domains of alcohol DHs, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate DH, lactate/malate DHs, formate/glycerate DHs, siroheme synthases, 6-phosphogluconate DH, amino acid DHs, repressor rex, NAD-binding potassium channel domain, CoA-binding, and ornithine cyclodeaminase-like domains. These domains have an alpha-beta-alpha configuration. NAD binding involves numerous hydrogen and van der Waals contacts. Length = 226

>gnl|CDD|133454 cd05312, NAD_bind_1_malic_enz, NAD(P) binding domain of malic enzyme (ME), subgroup 1

 Score = 56.4 bits (137), Expect = 1e-08
 Identities = 23/40 (57%), Positives = 29/40 (72%)

Query: 750 EGTASVAIAGLLASLRITKTRLSDNTILFQGSGEGTASVA 789
           +GTA+VA+AGLLA+LRIT   LSD  ILF G+G     +A
Sbjct: 2   QGTAAVALAGLLAALRITGKPLSDQRILFLGAGSAGIGIA 41

Malic enzyme (ME), a member of the amino acid dehydrogenase (DH)-like domain family, catalyzes the oxidative decarboxylation of L-malate to pyruvate in the presence of cations (typically Mg++ or Mn++) with the concomitant reduction of cofactor NAD+ or NADP+. ME has been found in all organisms, and plays important roles in diverse metabolic pathways such as photosynthesis and lipogenesis. This enzyme generally forms homotetramers. The conversion of malate to pyruvate by ME typically involves oxidation of malate to produce oxaloacetate, followed by decarboxylation of oxaloacetate to produce pyruvate and CO2. This subfamily consists of eukaryotic and bacterial ME. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann fold superfamily includes a wide variety of protein families including NAD(P)- binding domains of alcohol DHs, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate DH, lactate/malate DHs, formate/glycerate DHs, siroheme synthases, 6-phosphogluconate DH, amino acid DHs, repressor rex, NAD-binding potassium channel domain, CoA-binding, and ornithine cyclodeaminase-like domains. These domains have an alpha-beta-alpha configuration. NAD binding involves numerous hydrogen and van der Waals contacts. Length = 279

>gnl|CDD|240357 PTZ00317, PTZ00317, NADP-dependent malic enzyme; Provisional

 Score = 57.7 bits (140), Expect = 2e-08
 Identities = 22/32 (68%), Positives = 26/32 (81%)

Query: 817 DRNERLFYRLLSEYVVELMPIVYTPTVGLACQ 848
           D NE LFY LL +Y+ EL+PI+YTPTVG ACQ
Sbjct: 84  DTNETLFYALLLKYLKELLPIIYTPTVGEACQ 115

Length = 559

>gnl|CDD|223358 COG0281, SfcA, Malic enzyme [Energy production and conversion]

 Score = 56.4 bits (137), Expect = 3e-08
 Identities = 24/55 (43%), Positives = 31/55 (56%), Gaps = 5/55 (9%)

Query: 439 VFTADILKDMAAFNKRPIIFALSNPTSKAECTAEQAYVNTDGRGVFASGSPFDPV 493
            FT +++K+MA   K PIIFAL+NPT   E T E A    DG  + A+G    P 
Sbjct: 281 AFTEEMVKEMA---KHPIIFALANPT--PEITPEDAKEWGDGAAIVATGRSDYPN 330

Length = 432

>gnl|CDD|215594 PLN03129, PLN03129, NADP-dependent malic enzyme; Provisional

 Score = 55.3 bits (134), Expect = 1e-07
 Identities = 21/33 (63%), Positives = 26/33 (78%)

Query: 784 GTASVAVAGVLASLRITKTRLSDNTILFQGAGE 816
           GTA+VA+AG+LA+LR T   L+D  ILF GAGE
Sbjct: 299 GTAAVALAGLLAALRATGGDLADQRILFAGAGE 331

Length = 581

>gnl|CDD|215594 PLN03129, PLN03129, NADP-dependent malic enzyme; Provisional

 Score = 54.9 bits (133), Expect = 1e-07
 Identities = 24/46 (52%), Positives = 32/46 (69%), Gaps = 2/46 (4%)

Query: 751 GTASVAIAGLLASLRITKTRLSDNTILFQGSGEGTASVAVAGVLAS 796
           GTA+VA+AGLLA+LR T   L+D  ILF G+GE  A   +A ++A 
Sbjct: 299 GTAAVALAGLLAALRATGGDLADQRILFAGAGE--AGTGIAELIAL 342

Length = 581

>gnl|CDD|214912 smart00919, Malic_M, Malic enzyme, NAD binding domain

 Score = 53.2 bits (129), Expect = 1e-07
 Identities = 16/33 (48%), Positives = 22/33 (66%)

Query: 784 GTASVAVAGVLASLRITKTRLSDNTILFQGAGE 816
           GTA V +AG+L +L+IT  +L D  I+  GAG 
Sbjct: 3   GTAIVVLAGLLNALKITGKKLEDQRIVVNGAGA 35

Malic enzymes (malate oxidoreductases) catalyse the oxidative decarboxylation of malate to form pyruvate. Length = 231

>gnl|CDD|237414 PRK13529, PRK13529, malate dehydrogenase; Provisional

 Score = 54.0 bits (131), Expect = 2e-07
 Identities = 18/33 (54%), Positives = 25/33 (75%)

Query: 783 EGTASVAVAGVLASLRITKTRLSDNTILFQGAG 815
           +GT +V +AG+LA+L+IT   LSD  I+F GAG
Sbjct: 272 QGTGAVTLAGLLAALKITGEPLSDQRIVFLGAG 304

Length = 563

>gnl|CDD|217809 pfam03949, Malic_M, Malic enzyme, NAD binding domain

 Score = 52.9 bits (128), Expect = 2e-07
 Identities = 21/47 (44%), Positives = 32/47 (68%), Gaps = 2/47 (4%)

Query: 750 EGTASVAIAGLLASLRITKTRLSDNTILFQGSGEGTASVAVAGVLAS 796
           +GTA+V +AGLL +L+IT   LSD  I+F G+  G A + +A +L +
Sbjct: 2   QGTAAVVLAGLLNALKITGKPLSDQKIVFFGA--GAAGIGIAELLVA 46

Length = 255

>gnl|CDD|217809 pfam03949, Malic_M, Malic enzyme, NAD binding domain

 Score = 52.6 bits (127), Expect = 2e-07
 Identities = 18/34 (52%), Positives = 25/34 (73%)

Query: 783 EGTASVAVAGVLASLRITKTRLSDNTILFQGAGE 816
           +GTA+V +AG+L +L+IT   LSD  I+F GAG 
Sbjct: 2   QGTAAVVLAGLLNALKITGKPLSDQKIVFFGAGA 35

Length = 255

>gnl|CDD|133442 cd00762, NAD_bind_malic_enz, NAD(P) binding domain of malic enzyme

 Score = 53.0 bits (127), Expect = 2e-07
 Identities = 20/40 (50%), Positives = 32/40 (80%)

Query: 750 EGTASVAIAGLLASLRITKTRLSDNTILFQGSGEGTASVA 789
           +GTASVA+AGLLA+L++TK ++S++ +LF G+G     +A
Sbjct: 2   QGTASVAVAGLLAALKVTKKKISEHKVLFNGAGAAALGIA 41

Malic enzyme (ME), a member of the amino acid dehydrogenase (DH)-like domain family, catalyzes the oxidative decarboxylation of L-malate to pyruvate in the presence of cations (typically Mg++ or Mn++) with the concomitant reduction of cofactor NAD+ or NADP+. ME has been found in all organisms and plays important roles in diverse metabolic pathways such as photosynthesis and lipogenesis. This enzyme generally forms homotetramers. The conversion of malate to pyruvate by ME typically involves oxidation of malate to produce oxaloacetate, followed by decarboxylation of oxaloacetate to produce pyruvate and CO2. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann fold superfamily includes a wide variety of protein families including NAD(P)- binding domains of alcohol DHs, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate DH, lactate/malate DHs, formate/glycerate DHs, siroheme synthases, 6-phosphogluconate DH, amino acid DHs, repressor rex, NAD-binding potassium channel domain, CoA-binding, and ornithine cyclodeaminase-like domains. These domains have an alpha-beta-alpha configuration. NAD binding involves numerous hydrogen and van der Waals contacts. Length = 254

>gnl|CDD|133442 cd00762, NAD_bind_malic_enz, NAD(P) binding domain of malic enzyme

 Score = 53.0 bits (127), Expect = 2e-07
 Identities = 20/34 (58%), Positives = 30/34 (88%)

Query: 783 EGTASVAVAGVLASLRITKTRLSDNTILFQGAGE 816
           +GTASVAVAG+LA+L++TK ++S++ +LF GAG 
Sbjct: 2   QGTASVAVAGLLAALKVTKKKISEHKVLFNGAGA 35

Malic enzyme (ME), a member of the amino acid dehydrogenase (DH)-like domain family, catalyzes the oxidative decarboxylation of L-malate to pyruvate in the presence of cations (typically Mg++ or Mn++) with the concomitant reduction of cofactor NAD+ or NADP+. ME has been found in all organisms and plays important roles in diverse metabolic pathways such as photosynthesis and lipogenesis. This enzyme generally forms homotetramers. The conversion of malate to pyruvate by ME typically involves oxidation of malate to produce oxaloacetate, followed by decarboxylation of oxaloacetate to produce pyruvate and CO2. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann fold superfamily includes a wide variety of protein families including NAD(P)- binding domains of alcohol DHs, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate DH, lactate/malate DHs, formate/glycerate DHs, siroheme synthases, 6-phosphogluconate DH, amino acid DHs, repressor rex, NAD-binding potassium channel domain, CoA-binding, and ornithine cyclodeaminase-like domains. These domains have an alpha-beta-alpha configuration. NAD binding involves numerous hydrogen and van der Waals contacts. Length = 254

>gnl|CDD|214912 smart00919, Malic_M, Malic enzyme, NAD binding domain

 Score = 52.0 bits (126), Expect = 3e-07
 Identities = 19/54 (35%), Positives = 32/54 (59%), Gaps = 2/54 (3%)

Query: 751 GTASVAIAGLLASLRITKTRLSDNTILFQGSGEGTASVAVAGVLASLRITKTRL 804
           GTA V +AGLL +L+IT  +L D  I+  G+G   A + +A +L +  + +  +
Sbjct: 3   GTAIVVLAGLLNALKITGKKLEDQRIVVNGAGA--AGIGIAKLLVAAGVKRKNI 54

Malic enzymes (malate oxidoreductases) catalyse the oxidative decarboxylation of malate to form pyruvate. Length = 231

>gnl|CDD|133453 cd05311, NAD_bind_2_malic_enz, NAD(P) binding domain of malic enzyme (ME), subgroup 2

 Score = 51.9 bits (125), Expect = 3e-07
 Identities = 28/94 (29%), Positives = 45/94 (47%), Gaps = 12/94 (12%)

Query: 1  LLASLRITKTRLSDNTILFQGAGEASLGIADLCVMAMQKEGTSEQDARDKIWMVDSKGLI 60
          LL +L++   ++ +  I+  GAG A + IA L + A  K         + I +VDSKG+I
Sbjct: 12 LLNALKLVGKKIEEVKIVINGAGAAGIAIARLLLAAGAK--------PENIVVVDSKGVI 63

Query: 61 VKDRPEGGVTGHKVHYAKKHAPVKN---LADVVK 91
           + R +      K   AK+  P K    L + +K
Sbjct: 64 YEGREDDLNP-DKNEIAKETNPEKTGGTLKEALK 96

Malic enzyme (ME), a member of the amino acid dehydrogenase (DH)-like domain family, catalyzes the oxidative decarboxylation of L-malate to pyruvate in the presence of cations (typically Mg++ or Mn++) with the concomitant reduction of cofactor NAD+ or NADP+. ME has been found in all organisms, and plays important roles in diverse metabolic pathways such as photosynthesis and lipogenesis. This enzyme generally forms homotetramers. The conversion of malate to pyruvate by ME typically involves oxidation of malate to produce oxaloacetate, followed by decarboxylation of oxaloacetate to produce pyruvate and CO2. This subfamily consists primarily of archaeal and bacterial ME. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann fold superfamily includes a wide variety of protein families including NAD(P)- binding domains of alcohol DHs, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate DH, lactate/malate DHs, formate/glycerate DHs, siroheme synthases, 6-phosphogluconate DH, amino acid DHs, repressor rex, NAD-binding potassium channel domain, CoA-binding, and ornithine cyclodeaminase-like domains. These domains have an alpha-beta-alpha configuration. NAD binding involves numerous hydrogen and van der Waals contacts. Length = 226

>gnl|CDD|235976 PRK07232, PRK07232, bifunctional malic enzyme oxidoreductase/phosphotransacetylase; Reviewed

 Score = 52.8 bits (128), Expect = 6e-07
 Identities = 29/94 (30%), Positives = 46/94 (48%), Gaps = 12/94 (12%)

Query: 225 AGLLASLRITKTRLSDNTILFQGAGEASLGIADLCV-MAMQKEGTSEQDARDKIWMVDSK 283
           A LL +L +   ++ D  I+  GAG A++   +L V +  +KE          I + DSK
Sbjct: 170 AALLNALELVGKKIEDVKIVVSGAGAAAIACLNLLVALGAKKE---------NIIVCDSK 220

Query: 284 GLIVKDRPEGGVTGHKVHYAKKHAPVKNLADVVK 317
           G+I K R E G+   K  YA      + LA+ ++
Sbjct: 221 GVIYKGRTE-GMDEWKAAYAVD-TDARTLAEAIE 252

Length = 752

>gnl|CDD|133449 cd05191, NAD_bind_amino_acid_DH, NAD(P) binding domain of amino acid dehydrogenase-like proteins

 Score = 46.2 bits (110), Expect = 2e-06
 Identities = 25/68 (36%), Positives = 32/68 (47%), Gaps = 2/68 (2%)

Query: 718 GTASVAVAGLLASLRITKTRLSDNTILFQGAGEGTASVAIAGLLASLRITKTRLSDNTIL 777
            TA+ AVA L A+ ++T   L   T++  GAGE      IA LLA     K  L D  IL
Sbjct: 1   ATAAGAVALLKAAGKVTNKSLKGKTVVVLGAGE--VGKGIAKLLADEGGKKVVLCDRDIL 58

Query: 778 FQGSGEGT 785
              +  G 
Sbjct: 59  VTATPAGV 66

Amino acid dehydrogenase(DH)-like NAD(P)-binding domains are members of the Rossmann fold superfamily and are found in glutamate, leucine, and phenylalanine DHs (DHs), methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann fold superfamily includes a wide variety of protein families including NAD(P)- binding domains of alcohol DHs, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate DH, lactate/malate DHs, formate/glycerate DHs, siroheme synthases, 6-phosphogluconate DH, amino acid DHs, repressor rex, NAD-binding potassium channel domain, CoA-binding, and ornithine cyclodeaminase-like domains. These domains have an alpha-beta-alpha configuration. NAD binding involves numerous hydrogen and van der Waals contacts. Length = 86

>gnl|CDD|133449 cd05191, NAD_bind_amino_acid_DH, NAD(P) binding domain of amino acid dehydrogenase-like proteins

 Score = 45.4 bits (108), Expect = 3e-06
 Identities = 24/68 (35%), Positives = 31/68 (45%), Gaps = 2/68 (2%)

Query: 685 GTASVAVAGLLASLRITKTRLSDNTILFQGAGEGTASVAVAGLLASLRITKTRLSDNTIL 744
            TA+ AVA L A+ ++T   L   T++  GAGE      +A LLA     K  L D  IL
Sbjct: 1   ATAAGAVALLKAAGKVTNKSLKGKTVVVLGAGE--VGKGIAKLLADEGGKKVVLCDRDIL 58

Query: 745 FQGAGEGT 752
                 G 
Sbjct: 59  VTATPAGV 66

Amino acid dehydrogenase(DH)-like NAD(P)-binding domains are members of the Rossmann fold superfamily and are found in glutamate, leucine, and phenylalanine DHs (DHs), methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann fold superfamily includes a wide variety of protein families including NAD(P)- binding domains of alcohol DHs, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate DH, lactate/malate DHs, formate/glycerate DHs, siroheme synthases, 6-phosphogluconate DH, amino acid DHs, repressor rex, NAD-binding potassium channel domain, CoA-binding, and ornithine cyclodeaminase-like domains. These domains have an alpha-beta-alpha configuration. NAD binding involves numerous hydrogen and van der Waals contacts. Length = 86

>gnl|CDD|183799 PRK12862, PRK12862, malic enzyme; Reviewed

 Score = 50.7 bits (122), Expect = 3e-06
 Identities = 29/92 (31%), Positives = 45/92 (48%), Gaps = 10/92 (10%)

Query: 225 AGLLASLRITKTRLSDNTILFQGAGEASLGIADLCVMAMQKEGTSEQDARDKIWMVDSKG 284
           A LL  L++    + D  ++  GAG A+L   DL V    K        R+ IW+ D KG
Sbjct: 178 AALLNGLKLVGKDIEDVKLVASGAGAAALACLDLLVSLGVK--------RENIWVTDIKG 229

Query: 285 LIVKDRPEGGVTGHKVHYAKKHAPVKNLADVV 316
           ++ + R E  +   K  YA+K    + LA+V+
Sbjct: 230 VVYEGRTE-LMDPWKARYAQK-TDARTLAEVI 259

Length = 763

>gnl|CDD|237414 PRK13529, PRK13529, malate dehydrogenase; Provisional

 Score = 50.1 bits (121), Expect = 4e-06
 Identities = 20/42 (47%), Positives = 29/42 (69%), Gaps = 2/42 (4%)

Query: 750 EGTASVAIAGLLASLRITKTRLSDNTILFQGSGEGTASVAVA 791
           +GT +V +AGLLA+L+IT   LSD  I+F G+  G+A   +A
Sbjct: 272 QGTGAVTLAGLLAALKITGEPLSDQRIVFLGA--GSAGCGIA 311

Length = 563

>gnl|CDD|223358 COG0281, SfcA, Malic enzyme [Energy production and conversion]

 Score = 49.1 bits (118), Expect = 6e-06
 Identities = 24/81 (29%), Positives = 34/81 (41%), Gaps = 10/81 (12%)

Query: 142 ASLGIADLCVMAMQKEGTSEQDARDKIWMVDSKGLIVKDRPEGGVTGHKVHYAKKHAPVK 201
           A + IADL V A  KE          I++VD KGL+   R +  +   K   A +    +
Sbjct: 210 AGIAIADLLVAAGVKEE--------NIFVVDRKGLLYDGREDLTMNQKKYAKAIEDTGER 261

Query: 202 NLADVVKTVKPSILIGESCVN 222
            L   +      +LIG S V 
Sbjct: 262 TLDLAL--AGADVLIGVSGVG 280

Length = 432

>gnl|CDD|235976 PRK07232, PRK07232, bifunctional malic enzyme oxidoreductase/phosphotransacetylase; Reviewed

 Score = 48.6 bits (117), Expect = 1e-05
 Identities = 28/92 (30%), Positives = 45/92 (48%), Gaps = 12/92 (13%)

Query: 1   LLASLRITKTRLSDNTILFQGAGEASLGIADLCV-MAMQKEGTSEQDARDKIWMVDSKGL 59
           LL +L +   ++ D  I+  GAG A++   +L V +  +KE          I + DSKG+
Sbjct: 172 LLNALELVGKKIEDVKIVVSGAGAAAIACLNLLVALGAKKE---------NIIVCDSKGV 222

Query: 60  IVKDRPEGGVTGHKVHYAKKHAPVKNLADVVK 91
           I K R E G+   K  YA      + LA+ ++
Sbjct: 223 IYKGRTE-GMDEWKAAYAVD-TDARTLAEAIE 252

Length = 752

>gnl|CDD|183799 PRK12862, PRK12862, malic enzyme; Reviewed

 Score = 47.6 bits (114), Expect = 3e-05
 Identities = 28/90 (31%), Positives = 44/90 (48%), Gaps = 10/90 (11%)

Query: 1   LLASLRITKTRLSDNTILFQGAGEASLGIADLCVMAMQKEGTSEQDARDKIWMVDSKGLI 60
           LL  L++    + D  ++  GAG A+L   DL V    K        R+ IW+ D KG++
Sbjct: 180 LLNGLKLVGKDIEDVKLVASGAGAAALACLDLLVSLGVK--------RENIWVTDIKGVV 231

Query: 61  VKDRPEGGVTGHKVHYAKKHAPVKNLADVV 90
            + R E  +   K  YA+K    + LA+V+
Sbjct: 232 YEGRTE-LMDPWKARYAQK-TDARTLAEVI 259

Length = 763

>gnl|CDD|133453 cd05311, NAD_bind_2_malic_enz, NAD(P) binding domain of malic enzyme (ME), subgroup 2

 Score = 45.7 bits (109), Expect = 4e-05
 Identities = 19/51 (37%), Positives = 29/51 (56%), Gaps = 2/51 (3%)

Query: 718 GTASVAVAGLLASLRITKTRLSDNTILFQGAGEGTASVAIAGLLASLRITK 768
           GTA V +AGLL +L++   ++ +  I+  GA  G A +AIA LL +     
Sbjct: 3   GTAIVTLAGLLNALKLVGKKIEEVKIVINGA--GAAGIAIARLLLAAGAKP 51

Malic enzyme (ME), a member of the amino acid dehydrogenase (DH)-like domain family, catalyzes the oxidative decarboxylation of L-malate to pyruvate in the presence of cations (typically Mg++ or Mn++) with the concomitant reduction of cofactor NAD+ or NADP+. ME has been found in all organisms, and plays important roles in diverse metabolic pathways such as photosynthesis and lipogenesis. This enzyme generally forms homotetramers. The conversion of malate to pyruvate by ME typically involves oxidation of malate to produce oxaloacetate, followed by decarboxylation of oxaloacetate to produce pyruvate and CO2. This subfamily consists primarily of archaeal and bacterial ME. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann fold superfamily includes a wide variety of protein families including NAD(P)- binding domains of alcohol DHs, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate DH, lactate/malate DHs, formate/glycerate DHs, siroheme synthases, 6-phosphogluconate DH, amino acid DHs, repressor rex, NAD-binding potassium channel domain, CoA-binding, and ornithine cyclodeaminase-like domains. These domains have an alpha-beta-alpha configuration. NAD binding involves numerous hydrogen and van der Waals contacts. Length = 226

>gnl|CDD|133453 cd05311, NAD_bind_2_malic_enz, NAD(P) binding domain of malic enzyme (ME), subgroup 2

 Score = 45.3 bits (108), Expect = 4e-05
 Identities = 18/52 (34%), Positives = 29/52 (55%), Gaps = 2/52 (3%)

Query: 684 QGTASVAVAGLLASLRITKTRLSDNTILFQGAGEGTASVAVAGLLASLRITK 735
            GTA V +AGLL +L++   ++ +  I+  GA  G A +A+A LL +     
Sbjct: 2   HGTAIVTLAGLLNALKLVGKKIEEVKIVINGA--GAAGIAIARLLLAAGAKP 51

Malic enzyme (ME), a member of the amino acid dehydrogenase (DH)-like domain family, catalyzes the oxidative decarboxylation of L-malate to pyruvate in the presence of cations (typically Mg++ or Mn++) with the concomitant reduction of cofactor NAD+ or NADP+. ME has been found in all organisms, and plays important roles in diverse metabolic pathways such as photosynthesis and lipogenesis. This enzyme generally forms homotetramers. The conversion of malate to pyruvate by ME typically involves oxidation of malate to produce oxaloacetate, followed by decarboxylation of oxaloacetate to produce pyruvate and CO2. This subfamily consists primarily of archaeal and bacterial ME. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann fold superfamily includes a wide variety of protein families including NAD(P)- binding domains of alcohol DHs, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate DH, lactate/malate DHs, formate/glycerate DHs, siroheme synthases, 6-phosphogluconate DH, amino acid DHs, repressor rex, NAD-binding potassium channel domain, CoA-binding, and ornithine cyclodeaminase-like domains. These domains have an alpha-beta-alpha configuration. NAD binding involves numerous hydrogen and van der Waals contacts. Length = 226

>gnl|CDD|183799 PRK12862, PRK12862, malic enzyme; Reviewed

 Score = 46.8 bits (112), Expect = 4e-05
 Identities = 53/178 (29%), Positives = 71/178 (39%), Gaps = 45/178 (25%)

Query: 562 VVTDGERILGLGDLGAYGMGIPV--GKLSLYTALAGIKPHQCLPITLDVGTNTQQLLDDP 619
           VV++G  +LGLG++G      PV  GK  L+   AGI       I LD          DP
Sbjct: 75  VVSNGTAVLGLGNIGPLA-SKPVMEGKAVLFKKFAGI---DVFDIELDE--------SDP 122

Query: 620 LYIGLRQRRTTGQAYDDFIEEFMQAVVAR----YGQHVLIQFEDFANHSAFRFLDTYRNR 675
                          D  +E     +VA     +G    I  ED      F      R R
Sbjct: 123 ---------------DKLVE-----IVAALEPTFGG---INLEDIKAPECFYIERELRER 159

Query: 676 Y--CVFNDDIQGTASVAVAGLLASLRITKTRLSDNTILFQGAGEGTASVAVAGLLASL 731
               VF+DD  GTA +  A LL  L++    + D  ++  GA  G A++A   LL SL
Sbjct: 160 MKIPVFHDDQHGTAIIVAAALLNGLKLVGKDIEDVKLVASGA--GAAALACLDLLVSL 215

Length = 763

>gnl|CDD|223358 COG0281, SfcA, Malic enzyme [Energy production and conversion]

 Score = 44.9 bits (107), Expect = 1e-04
 Identities = 18/47 (38%), Positives = 29/47 (61%), Gaps = 2/47 (4%)

Query: 751 GTASVAIAGLLASLRITKTRLSDNTILFQGSGEGTASVAVAGVLASL 797
           GTA V +A LL +L++T  +L D  I+   +G G A +A+A +L + 
Sbjct: 177 GTAIVTLAALLNALKLTGKKLKDQKIVI--NGAGAAGIAIADLLVAA 221

Length = 432

>gnl|CDD|183798 PRK12861, PRK12861, malic enzyme; Reviewed

 Score = 43.7 bits (103), Expect = 4e-04
 Identities = 63/243 (25%), Positives = 92/243 (37%), Gaps = 62/243 (25%)

Query: 501 TPGQEYVVELMPIV--------YTPTVGLACQKYGLIFRRPRGLFISIHDKGHISEVLRN 552
           TPG+  VV   P+V        YTP V  AC++   I   P   F     +G++  V   
Sbjct: 19  TPGKISVVASKPLVTQRDLALAYTPGVASACEE---IAADPLNAF-RFTSRGNLVGV--- 71

Query: 553 WPETDIRAIVVTDGERILGLGDLGAYGMGIPV--GKLSLYTALAGIKPHQCLPITLDVGT 610
                     +T+G  +LGLG++GA     PV  GK  L+   AGI          D+  
Sbjct: 72  ----------ITNGTAVLGLGNIGALA-SKPVMEGKAVLFKKFAGID-------VFDIEI 113

Query: 611 NTQQLLDDPLYIGLRQRRTTGQAYDDFIEEFMQAVVARYGQHVLIQFEDFANHSAFRFLD 670
           N      DP                D + + +  +   +G    I  ED      F    
Sbjct: 114 NET----DP----------------DKLVDIIAGLEPTFGG---INLEDIKAPECFTVER 150

Query: 671 TYRNRY--CVFNDDIQGTASVAVAGLLASLRITKTRLSDNTILFQGAGEGTASVAVAGLL 728
             R R    VF+DD  GTA    A  +  L++    + +  ++  GA  G A++A   LL
Sbjct: 151 KLRERMKIPVFHDDQHGTAITVSAAFINGLKVVGKSIKEVKVVTSGA--GAAALACLDLL 208

Query: 729 ASL 731
             L
Sbjct: 209 VDL 211

Length = 764

>gnl|CDD|223358 COG0281, SfcA, Malic enzyme [Energy production and conversion]

 Score = 43.3 bits (103), Expect = 5e-04
 Identities = 14/32 (43%), Positives = 21/32 (65%)

Query: 784 GTASVAVAGVLASLRITKTRLSDNTILFQGAG 815
           GTA V +A +L +L++T  +L D  I+  GAG
Sbjct: 177 GTAIVTLAALLNALKLTGKKLKDQKIVINGAG 208

Length = 432

>gnl|CDD|235976 PRK07232, PRK07232, bifunctional malic enzyme oxidoreductase/phosphotransacetylase; Reviewed

 Score = 43.2 bits (103), Expect = 6e-04
 Identities = 21/54 (38%), Positives = 32/54 (59%), Gaps = 2/54 (3%)

Query: 678 VFNDDIQGTASVAVAGLLASLRITKTRLSDNTILFQGAGEGTASVAVAGLLASL 731
           VF+DD  GTA ++ A LL +L +   ++ D  I+  GA  G A++A   LL +L
Sbjct: 156 VFHDDQHGTAIISAAALLNALELVGKKIEDVKIVVSGA--GAAAIACLNLLVAL 207

Length = 752

>gnl|CDD|240357 PTZ00317, PTZ00317, NADP-dependent malic enzyme; Provisional

 Score = 42.7 bits (101), Expect = 7e-04
 Identities = 16/48 (33%), Positives = 29/48 (60%), Gaps = 2/48 (4%)

Query: 750 EGTASVAIAGLLASLRITKTRLSDNTILFQGSGEGTASVAVAGVLASL 797
           +GT +V  AG L +L+++     +  I+F G+  G+A++ VA  +A L
Sbjct: 274 QGTGAVIAAGFLNALKLSGVPPEEQRIVFFGA--GSAAIGVANNIADL 319

Length = 559

>gnl|CDD|223358 COG0281, SfcA, Malic enzyme [Energy production and conversion]

 Score = 42.2 bits (100), Expect = 0.001
 Identities = 11/32 (34%), Positives = 17/32 (53%)

Query: 817 DRNERLFYRLLSEYVVELMPIVYTPTVGLACQ 848
           D  + L Y  +  +  E +P+ YTP V  AC+
Sbjct: 29  DPGKILIYPTVPLHTQEDLPLAYTPGVAEACK 60

Length = 432

>gnl|CDD|133449 cd05191, NAD_bind_amino_acid_DH, NAD(P) binding domain of amino acid dehydrogenase-like proteins

 Score = 38.5 bits (90), Expect = 0.001
 Identities = 20/66 (30%), Positives = 30/66 (45%), Gaps = 2/66 (3%)

Query: 751 GTASVAIAGLLASLRITKTRLSDNTILFQGSGEGTASVAVAGVLASLRITKTRLSDNTIL 810
            TA+ A+A L A+ ++T   L   T++  G+GE      +A +LA     K  L D  IL
Sbjct: 1   ATAAGAVALLKAAGKVTNKSLKGKTVVVLGAGE--VGKGIAKLLADEGGKKVVLCDRDIL 58

Query: 811 FQGAGE 816
                 
Sbjct: 59  VTATPA 64

Amino acid dehydrogenase(DH)-like NAD(P)-binding domains are members of the Rossmann fold superfamily and are found in glutamate, leucine, and phenylalanine DHs (DHs), methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann fold superfamily includes a wide variety of protein families including NAD(P)- binding domains of alcohol DHs, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate DH, lactate/malate DHs, formate/glycerate DHs, siroheme synthases, 6-phosphogluconate DH, amino acid DHs, repressor rex, NAD-binding potassium channel domain, CoA-binding, and ornithine cyclodeaminase-like domains. These domains have an alpha-beta-alpha configuration. NAD binding involves numerous hydrogen and van der Waals contacts. Length = 86

>gnl|CDD|133453 cd05311, NAD_bind_2_malic_enz, NAD(P) binding domain of malic enzyme (ME), subgroup 2

 Score = 39.9 bits (94), Expect = 0.003
 Identities = 21/79 (26%), Positives = 38/79 (48%), Gaps = 9/79 (11%)

Query: 751 GTASVAIAGLLASLRITKTRLSDNTILFQGSGEGTASVAVAGVLASLRITKTRLSDNTIL 810
           GTA V +AGLL +L++   ++ +  I+   +G G A +A+A +L +         +N ++
Sbjct: 3   GTAIVTLAGLLNALKLVGKKIEEVKIVI--NGAGAAGIAIARLLLAAGAKP----ENIVV 56

Query: 811 FQGAG---EDRNERLFYRL 826
               G   E R + L    
Sbjct: 57  VDSKGVIYEGREDDLNPDK 75

Malic enzyme (ME), a member of the amino acid dehydrogenase (DH)-like domain family, catalyzes the oxidative decarboxylation of L-malate to pyruvate in the presence of cations (typically Mg++ or Mn++) with the concomitant reduction of cofactor NAD+ or NADP+. ME has been found in all organisms, and plays important roles in diverse metabolic pathways such as photosynthesis and lipogenesis. This enzyme generally forms homotetramers. The conversion of malate to pyruvate by ME typically involves oxidation of malate to produce oxaloacetate, followed by decarboxylation of oxaloacetate to produce pyruvate and CO2. This subfamily consists primarily of archaeal and bacterial ME. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann fold superfamily includes a wide variety of protein families including NAD(P)- binding domains of alcohol DHs, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate DH, lactate/malate DHs, formate/glycerate DHs, siroheme synthases, 6-phosphogluconate DH, amino acid DHs, repressor rex, NAD-binding potassium channel domain, CoA-binding, and ornithine cyclodeaminase-like domains. These domains have an alpha-beta-alpha configuration. NAD binding involves numerous hydrogen and van der Waals contacts. Length = 226

>gnl|CDD|133449 cd05191, NAD_bind_amino_acid_DH, NAD(P) binding domain of amino acid dehydrogenase-like proteins

 Score = 37.0 bits (86), Expect = 0.003
 Identities = 16/43 (37%), Positives = 22/43 (51%)

Query: 224 VAGLLASLRITKTRLSDNTILFQGAGEASLGIADLCVMAMQKE 266
           VA L A+ ++T   L   T++  GAGE   GIA L      K+
Sbjct: 7   VALLKAAGKVTNKSLKGKTVVVLGAGEVGKGIAKLLADEGGKK 49

Amino acid dehydrogenase(DH)-like NAD(P)-binding domains are members of the Rossmann fold superfamily and are found in glutamate, leucine, and phenylalanine DHs (DHs), methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann fold superfamily includes a wide variety of protein families including NAD(P)- binding domains of alcohol DHs, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate DH, lactate/malate DHs, formate/glycerate DHs, siroheme synthases, 6-phosphogluconate DH, amino acid DHs, repressor rex, NAD-binding potassium channel domain, CoA-binding, and ornithine cyclodeaminase-like domains. These domains have an alpha-beta-alpha configuration. NAD binding involves numerous hydrogen and van der Waals contacts. Length = 86

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	848
KOG1257|consensus	582		100.0
PRK13529	563	malate dehydrogenase; Provisional	100.0
PLN03129	581	NADP-dependent malic enzyme; Provisional	100.0
PTZ00317	559	NADP-dependent malic enzyme; Provisional	100.0
PTZ00317	559	NADP-dependent malic enzyme; Provisional	100.0
PRK13529	563	malate dehydrogenase; Provisional	100.0
PLN03129	581	NADP-dependent malic enzyme; Provisional	100.0
PF03949	255	Malic_M: Malic enzyme, NAD binding domain; InterPr	100.0
PF00390	182	malic: Malic enzyme, N-terminal domain; InterPro:	100.0
KOG1257|consensus	582		100.0
cd00762	254	NAD_bind_malic_enz NAD(P) binding domain of malic	100.0
cd05312	279	NAD_bind_1_malic_enz NAD(P) binding domain of mali	100.0
COG0281	432	SfcA Malic enzyme [Energy production and conversio	100.0
PRK12861	764	malic enzyme; Reviewed	100.0
COG0281	432	SfcA Malic enzyme [Energy production and conversio	100.0
PRK12862	763	malic enzyme; Reviewed	100.0
PRK07232	752	bifunctional malic enzyme oxidoreductase/phosphotr	100.0
PRK12861	764	malic enzyme; Reviewed	100.0
PRK07232	752	bifunctional malic enzyme oxidoreductase/phosphotr	100.0
PRK12862	763	malic enzyme; Reviewed	100.0
cd05312	279	NAD_bind_1_malic_enz NAD(P) binding domain of mali	100.0
PF03949	255	Malic_M: Malic enzyme, NAD binding domain; InterPr	100.0
cd00762	254	NAD_bind_malic_enz NAD(P) binding domain of malic	100.0
cd05311	226	NAD_bind_2_malic_enz NAD(P) binding domain of mali	100.0
cd05311	226	NAD_bind_2_malic_enz NAD(P) binding domain of mali	99.92
PF00390	182	malic: Malic enzyme, N-terminal domain; InterPro:	99.36
cd05191	86	NAD_bind_amino_acid_DH NAD(P) binding domain of am	97.39
cd05191	86	NAD_bind_amino_acid_DH NAD(P) binding domain of am	97.1
PRK14031	444	glutamate dehydrogenase; Provisional	95.56
PRK09754	396	phenylpropionate dioxygenase ferredoxin reductase	95.36
PRK05476	425	S-adenosyl-L-homocysteine hydrolase; Provisional	95.09
PLN02477	410	glutamate dehydrogenase	94.63
PRK09414	445	glutamate dehydrogenase; Provisional	94.57
PRK14030	445	glutamate dehydrogenase; Provisional	94.13
PTZ00079	454	NADP-specific glutamate dehydrogenase; Provisional	93.34
PRK14982	340	acyl-ACP reductase; Provisional	93.02
PRK12549	284	shikimate 5-dehydrogenase; Reviewed	91.68
PRK12749	288	quinate/shikimate dehydrogenase; Reviewed	89.88
TIGR02374	785	nitri_red_nirB nitrite reductase [NAD(P)H], large	89.44
cd00401	413	AdoHcyase S-adenosyl-L-homocysteine hydrolase (Ado	89.31
cd05211	217	NAD_bind_Glu_Leu_Phe_Val NAD(P) binding domain of	89.03
cd01065	155	NAD_bind_Shikimate_DH NAD(P) binding domain of Shi	88.98
PF00208	244	ELFV_dehydrog: Glutamate/Leucine/Phenylalanine/Val	88.97
PLN02494	477	adenosylhomocysteinase	88.93
TIGR01809	282	Shik-DH-AROM shikimate-5-dehydrogenase, fungal ARO	88.72
TIGR01035	417	hemA glutamyl-tRNA reductase. This enzyme, togethe	88.62
PF01488	135	Shikimate_DH: Shikimate / quinate 5-dehydrogenase;	88.51
PRK14027	283	quinate/shikimate dehydrogenase; Provisional	88.36
cd01078	194	NAD_bind_H4MPT_DH NADP binding domain of methylene	88.3
COG0373	414	HemA Glutamyl-tRNA reductase [Coenzyme metabolism]	87.83
cd05211	217	NAD_bind_Glu_Leu_Phe_Val NAD(P) binding domain of	87.67
PRK12548	289	shikimate 5-dehydrogenase; Provisional	87.56
COG0334	411	GdhA Glutamate dehydrogenase/leucine dehydrogenase	87.54
PRK14192	283	bifunctional 5,10-methylene-tetrahydrofolate dehyd	87.26
PRK00258	278	aroE shikimate 5-dehydrogenase; Reviewed	87.17
cd05313	254	NAD_bind_2_Glu_DH NAD(P) binding domain of glutama	86.53
cd01080	168	NAD_bind_m-THF_DH_Cyclohyd NADP binding domain of	86.27
PF01488	135	Shikimate_DH: Shikimate / quinate 5-dehydrogenase;	85.86
KOG0685|consensus	498		85.74
PLN00106	323	malate dehydrogenase	85.55
KOG0029|consensus	501		85.43
cd01078	194	NAD_bind_H4MPT_DH NADP binding domain of methylene	85.19
cd01065	155	NAD_bind_Shikimate_DH NAD(P) binding domain of Shi	84.48
TIGR00936	406	ahcY adenosylhomocysteinase. This enzyme hydrolyze	84.42
PF07992	201	Pyr_redox_2: Pyridine nucleotide-disulphide oxidor	84.36
PF00670	162	AdoHcyase_NAD: S-adenosyl-L-homocysteine hydrolase	84.25
PF13738	203	Pyr_redox_3: Pyridine nucleotide-disulphide oxidor	83.68
PF00899	135	ThiF: ThiF family; InterPro: IPR000594 Ubiquitin-a	83.62
cd01076	227	NAD_bind_1_Glu_DH NAD(P) binding domain of glutama	82.49
cd05213	311	NAD_bind_Glutamyl_tRNA_reduct NADP-binding domain	82.47
COG0169	283	AroE Shikimate 5-dehydrogenase [Amino acid transpo	82.38
cd05313	254	NAD_bind_2_Glu_DH NAD(P) binding domain of glutama	82.19
TIGR00518	370	alaDH alanine dehydrogenase. The family of known L	82.01
PF01494	356	FAD_binding_3: FAD binding domain; InterPro: IPR00	81.9
PRK12549	284	shikimate 5-dehydrogenase; Reviewed	81.7
PRK12550	272	shikimate 5-dehydrogenase; Reviewed	81.69
COG0373	414	HemA Glutamyl-tRNA reductase [Coenzyme metabolism]	81.35
cd01076	227	NAD_bind_1_Glu_DH NAD(P) binding domain of glutama	81.27
TIGR03169	364	Nterm_to_SelD pyridine nucleotide-disulfide oxidor	81.22
PRK08328	231	hypothetical protein; Provisional	81.0
TIGR02354	200	thiF_fam2 thiamine biosynthesis protein ThiF, fami	80.83
TIGR01292	300	TRX_reduct thioredoxin-disulfide reductase. This m	80.68
TIGR02853	287	spore_dpaA dipicolinic acid synthetase, A subunit.	80.52

>KOG1257|consensus

Probab=100.00  E-value=1.8e-106  Score=891.11  Aligned_cols=357  Identities=57%  Similarity=0.966  Sum_probs=322.5

Q ss_pred             cCCcchhhh-hhhccccccHHHHhhhcccccCcccccchhHHHHHhhccccccCCChhhHHHHHHhhcccceeEEEeccC
Q psy14377        306 HAPVKNLAD-VVKTGMAFSIEERQALGIHGLLPAAVKSQDEQLHLCKLNVDRYEDPLNKYIYLQALAVKTDIRAIVVTDG  384 (848)
Q Consensus       306 ~~~~~~l~~-~~n~g~~~~~~er~~~~~~G~~p~~v~~~~~q~~~~~~~~~~~~~~~~~~~~L~~l~~~~~~~~~~~~d~  384 (848)
                      ..++..|++ .+|||++||.+|||++++||+|||.|+|+|+|++||+.++++++++++||.||..|+++          |
T Consensus        29 ~~g~~ll~~p~~NKglAFTl~ERq~l~i~GLLPp~v~t~d~Q~~r~~~~l~~~~~~l~ky~~L~~L~~r----------N   98 (582)
T KOG1257|consen   29 KRGYDLLRDPRYNKGLAFTLEERQRLGIHGLLPPVVRTQDEQALRCMNNLRSLTSPLAKYIYLMDLQDR----------N   98 (582)
T ss_pred             cCChhhccCCCcccccccCHHHHHhhCccccCCccccCHHHHHHHHHHHHHhccchHHHHHHHHHHHHh----------h
Confidence            357788888 89999999999999999999999999999999999999999999999999999999999          8


Q ss_pred             ceecccccCCCCCCCcccccccHHHHHcCCCcCccCceeeEEccccccccCCCCCCCHHHHHHHHhcCCCceEEecCCCC
Q psy14377        385 ERILGLGDLGAYGMGIPVGKLSLYTALAGIKPHQCLPITLDVGTNWRRAAAIPQVFTADILKDMAAFNKRPIIFALSNPT  464 (848)
Q Consensus       385 ~~l~g~~~~g~~~~~~~~g~~~L~~al~g~kP~~~~~~~v~iG~~~~~~S~~~g~FTeevvk~Ma~~~~rPIIFaLSNPt  464 (848)
                      ++|                                                                             
T Consensus        99 erL-----------------------------------------------------------------------------  101 (582)
T KOG1257|consen   99 ERL-----------------------------------------------------------------------------  101 (582)
T ss_pred             hHH-----------------------------------------------------------------------------
Confidence            877                                                                             


Q ss_pred             CccCCCHHHHhccCCCcEEEEeCCCCCCcccCCeEEecccchhhccCCeEecchhhhHHHhhccccccCccceeeccCcc
Q psy14377        465 SKAECTAEQAYVNTDGRGVFASGSPFDPVTYKGKTFTPGQEYVVELMPIVYTPTVGLACQKYGLIFRRPRGLFISIHDKG  544 (848)
Q Consensus       465 ~~~E~tpe~a~~~T~G~ai~AtGsPf~pv~y~g~~~~~~q~nn~e~lPvvYTPGVG~acl~~~~i~r~p~gm~L~~~d~g  544 (848)
                                                   ||+     ....|..+++|++||||||++|+.||.+||+|+|||++++|+|
T Consensus       102 -----------------------------fY~-----~l~~nie~~~PIvYTPTvG~acq~y~~i~r~p~Glfisi~D~G  147 (582)
T KOG1257|consen  102 -----------------------------FYR-----LLIDNIEELLPIVYTPTVGLACQQYGLIFRRPQGLFISIKDKG  147 (582)
T ss_pred             -----------------------------HHH-----HHHhhHHHhCCeeecCcHHHHHHHhhhhhccCceeEEEecccc
Confidence                                         555     7789999999999999999999999999999999999999999


Q ss_pred             cHHHHHhcCCCCCccEEEEecCceeeccCCCCCCCCCccccceeeeeecCCCCCCceeeEEeeccCCcccccCCcccccc
Q psy14377        545 HISEVLRNWPETDIRAIVVTDGERILGLGDLGAYGMGIPVGKLSLYTALAGIKPHQCLPITLDVGTNTQQLLDDPLYIGL  624 (848)
Q Consensus       545 ~i~eiL~Nwp~~d~~viVVTDG~rILGLGDlG~~gmgIpvGKl~Ly~a~aGI~p~~~LPv~LDvGTnn~~ll~Dp~y~g~  624 (848)
                      ||.++|+|||+++|++||||||||||||||||++|||||||||+|||+||||+|++|||||||||||||+||+||+|+|+
T Consensus       148 hi~~~l~nWp~~~V~~IvVTDGerILGLGDlG~~GmgIpvgKL~Lyta~~GI~P~~cLPV~LDVGTNNe~Ll~DplYiGL  227 (582)
T KOG1257|consen  148 HIKQVLKNWPERNVKAIVVTDGERILGLGDLGVNGMGIPVGKLALYTALGGIRPSRCLPVCLDVGTNNEKLLNDPLYIGL  227 (582)
T ss_pred             hHHHHHHhCCccceeEEEEeCCCceecccccccCcccceecHHHHHHHhcCCChhhceeEEEeccCChHHHhcCcccccc
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             cccCCCCcchhHHHHHHHHHHHHhhCCceeeeeecCCCcchHHHHHHHcccCceeccCCchHHHHHHHHHHHHHhhhCCc
Q psy14377        625 RQRRTTGQAYDDFIEEFMQAVVARYGQHVLIQFEDFANHSAFRFLDTYRNRYCVFNDDIQGTASVAVAGLLASLRITKTR  704 (848)
Q Consensus       625 r~~R~~g~~y~~fvdefv~av~~~fGp~~~IqfEDf~~~naf~lL~ryr~~~~~FnDDiQGTaaV~LAgllaAlr~t~~~  704 (848)
                      ||+|++|++||+|+||||+|+.++|||+++||||||+++|||++|+|||+++|||||||||||+|+|||||+|+|++|++
T Consensus       228 r~~R~~g~eYd~~~dEFm~Av~~~yG~~~lIqFEDF~~~nAfrlL~kYr~~~c~FNDDIQGTaaValAgllaa~rit~~~  307 (582)
T KOG1257|consen  228 RQRRVRGKEYDEFLDEFMEAVVQRYGPNTLIQFEDFANHNAFRLLEKYRNKYCMFNDDIQGTAAVALAGLLAALRITGKP  307 (582)
T ss_pred             ccccccccHHHHHHHHHHHHHHHHhCcceEEEehhccchhHHHHHHHhccccceecccccchhHHHHHHHHHHHHHhCCc
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCCceEEecCcchhhHHHHHHHHHHHhcccc----------ccccc-CceecCCCCCCchH-HHhh-hccccchhhcccc
Q psy14377        705 LSDNTILFQGAGEGTASVAVAGLLASLRITK----------TRLSD-NTILFQGAGEGTAS-VAIA-GLLASLRITKTRL  771 (848)
Q Consensus       705 l~d~riv~~GAG~A~~g~giA~ll~~~~~~~----------~~~~d-~g~i~~~r~~~~~~-~~~~-~~~~~~r~~~~~~  771 (848)
                      |+|++|||+|||+|  |+|||+||+.+|+++          .-+.| +|+|-++|.++-.. ...+ .-..+-+.|+++.
T Consensus       308 lsd~~ilf~GAG~A--~~GIA~l~v~~m~~~Gl~~eeA~kkIwlvD~~GLi~~~r~~~l~~~~~~fAk~~~~~~~L~e~V  385 (582)
T KOG1257|consen  308 LSDHVILFLGAGEA--ALGIANLIVMAMVKEGLSEEEARKKIWLVDSKGLITKGRKASLTEEKKPFAKDHEEIKDLEEAV  385 (582)
T ss_pred             cccceEEEecCchH--HhhHHHHHHHHHHHcCCCHHHHhccEEEEecCceeeccccCCCChhhccccccChHHHHHHHHH
Confidence            99999999999999  999999999998664          11444 66666666533221 1111 1111222444443


Q ss_pred             C--CCceEEeecCCCc
Q psy14377        772 S--DNTILFQGSGEGT  785 (848)
Q Consensus       772 ~--~~~~~~~~s~~~~  785 (848)
                      +  .-++++|.|+-|-
T Consensus       386 ~~vKPtvLiG~S~~~g  401 (582)
T KOG1257|consen  386 KEVKPTVLIGASGVGG  401 (582)
T ss_pred             HhcCCcEEEecccCCc
Confidence            3  3578888887654

>PRK13529 malate dehydrogenase; Provisional

Probab=100.00  E-value=5.7e-104  Score=889.75  Aligned_cols=358  Identities=44%  Similarity=0.736  Sum_probs=332.8

Q ss_pred             CCcchhhh-hhhccccccHHHHhhhcccccCcccccchhHHHHHhhccccccCCChhhHHHHHHhhcccceeEEEeccCc
Q psy14377        307 APVKNLAD-VVKTGMAFSIEERQALGIHGLLPAAVKSQDEQLHLCKLNVDRYEDPLNKYIYLQALAVKTDIRAIVVTDGE  385 (848)
Q Consensus       307 ~~~~~l~~-~~n~g~~~~~~er~~~~~~G~~p~~v~~~~~q~~~~~~~~~~~~~~~~~~~~L~~l~~~~~~~~~~~~d~~  385 (848)
                      ++...|++ .+|||++||.+||+++|++|||||.|+|+|+|++||+.++++++++++||+||.+|+++          |+
T Consensus        16 ~G~~lL~~p~~NKgtaFt~~ER~~lgl~GLLPp~v~t~e~Q~~R~~~~~~~~~~~l~ky~~L~~L~~~----------Ne   85 (563)
T PRK13529         16 RGPALLNNPLLNKGTAFTEEEREEFGLEGLLPPAVETLEEQAERAYRQYQSKPTDLEKHIYLRNLQDR----------NE   85 (563)
T ss_pred             cchhhhcCcccccccCCCHHHHHhcCCCCCCCCCccCHHHHHHHHHHHHhcCCChHHHHHHHHHHHhc----------Cc
Confidence            45666777 78999999999999999999999999999999999999999999999999999999998          77


Q ss_pred             eecccccCCCCCCCcccccccHHHHHcCCCcCccCceeeEEccccccccCCCCCCCHHHHHHHHhcCCCceEEecCCCCC
Q psy14377        386 RILGLGDLGAYGMGIPVGKLSLYTALAGIKPHQCLPITLDVGTNWRRAAAIPQVFTADILKDMAAFNKRPIIFALSNPTS  465 (848)
Q Consensus       386 ~l~g~~~~g~~~~~~~~g~~~L~~al~g~kP~~~~~~~v~iG~~~~~~S~~~g~FTeevvk~Ma~~~~rPIIFaLSNPt~  465 (848)
                      +|                                                                              
T Consensus        86 ~L------------------------------------------------------------------------------   87 (563)
T PRK13529         86 TL------------------------------------------------------------------------------   87 (563)
T ss_pred             hh------------------------------------------------------------------------------
Confidence            66                                                                              


Q ss_pred             ccCCCHHHHhccCCCcEEEEeCCCCCCcccCCeEEecccchhhccCCeEecchhhhHHHhhccccccCccceeeccCccc
Q psy14377        466 KAECTAEQAYVNTDGRGVFASGSPFDPVTYKGKTFTPGQEYVVELMPIVYTPTVGLACQKYGLIFRRPRGLFISIHDKGH  545 (848)
Q Consensus       466 ~~E~tpe~a~~~T~G~ai~AtGsPf~pv~y~g~~~~~~q~nn~e~lPvvYTPGVG~acl~~~~i~r~p~gm~L~~~d~g~  545 (848)
                                                  ||+     ..+.|..++||++||||||++|++|+++||+|+|||+|++|+|+
T Consensus        88 ----------------------------fy~-----ll~~~~ee~~PivYTPTVG~ac~~~s~~~r~p~Glyis~~d~g~  134 (563)
T PRK13529         88 ----------------------------FYR-----LLSDHLEEMMPIIYTPTVGEACERFSHIYRRPRGLFISYDDRDR  134 (563)
T ss_pred             ----------------------------hHH-----HHHhCHHHhCCeeecccHHHHHHHHhhcccCCCceEeccCCHHH
Confidence                                        666     88899999999999999999999999999999999999999999


Q ss_pred             HHHHHhcCCCCCccEEEEecCceeeccCCCCCCCCCccccceeeeeecCCCCCCceeeEEeeccCCcccccCCccccccc
Q psy14377        546 ISEVLRNWPETDIRAIVVTDGERILGLGDLGAYGMGIPVGKLSLYTALAGIKPHQCLPITLDVGTNTQQLLDDPLYIGLR  625 (848)
Q Consensus       546 i~eiL~Nwp~~d~~viVVTDG~rILGLGDlG~~gmgIpvGKl~Ly~a~aGI~p~~~LPv~LDvGTnn~~ll~Dp~y~g~r  625 (848)
                      ++++|+|||.++|++||||||||||||||+|++|||||+||++|||+||||||++|||||||+|||||+||+||+|+|+|
T Consensus       135 i~~~l~nwp~~~v~viVVTDG~rILGLGDlG~~Gm~I~~GKl~Ly~a~aGI~P~~~lPI~LDvGTnNe~Ll~DP~YlG~r  214 (563)
T PRK13529        135 IEDILQNAPNRDIKLIVVTDGERILGIGDQGIGGMGIPIGKLSLYTACGGIDPARTLPVVLDVGTNNEQLLNDPLYLGWR  214 (563)
T ss_pred             HHHHHhcCCcccceEEEEeCCceeeeccccCCCcccccccHHHHhhccCCCChhheeceEEecCCCchhhccCccccCcC
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             ccCCCCcchhHHHHHHHHHHHHhhCCceeeeeecCCCcchHHHHHHHcccCceeccCCchHHHHHHHHHHHHHhhhCCcC
Q psy14377        626 QRRTTGQAYDDFIEEFMQAVVARYGQHVLIQFEDFANHSAFRFLDTYRNRYCVFNDDIQGTASVAVAGLLASLRITKTRL  705 (848)
Q Consensus       626 ~~R~~g~~y~~fvdefv~av~~~fGp~~~IqfEDf~~~naf~lL~ryr~~~~~FnDDiQGTaaV~LAgllaAlr~t~~~l  705 (848)
                      |+|++|++|++|+||||++++.+| |+++||||||+++|||++|+|||+++|||||||||||+|+||||+||+|++|++|
T Consensus       215 ~~R~~g~eY~~f~defv~av~~~~-P~~~I~~EDf~~~~af~iL~ryr~~i~~FnDDiQGTaaV~LAgll~A~r~~g~~l  293 (563)
T PRK13529        215 HPRIRGEEYDEFVDEFVQAVKRRF-PNALLQFEDFAQKNARRILERYRDEICTFNDDIQGTGAVTLAGLLAALKITGEPL  293 (563)
T ss_pred             CCCCchHHHHHHHHHHHHHHHHhC-CCeEEehhhcCCchHHHHHHHhccCCCeeccccchHHHHHHHHHHHHHHHhCCCh
Confidence            999999999999999999999999 9999999999999999999999999999999999999999999999999999999


Q ss_pred             CCceEEecCcchhhHHHHHHHHHHHhccc----------cccccc-CceecCCCCCCchH-HHhhhccc----------c
Q psy14377        706 SDNTILFQGAGEGTASVAVAGLLASLRIT----------KTRLSD-NTILFQGAGEGTAS-VAIAGLLA----------S  763 (848)
Q Consensus       706 ~d~riv~~GAG~A~~g~giA~ll~~~~~~----------~~~~~d-~g~i~~~r~~~~~~-~~~~~~~~----------~  763 (848)
                      +||||||+|||+|  |+|||+||+++|++          +..++| +|+|+++|++ ++. +..++-.+          .
T Consensus       294 ~d~riv~~GAGsA--giGia~ll~~~~~~~Gl~~eeA~~~i~~vD~~GLl~~~r~~-l~~~k~~fa~~~~~~~~~~~~~~  370 (563)
T PRK13529        294 SDQRIVFLGAGSA--GCGIADQIVAAMVREGLSEEEARKRFFMVDRQGLLTDDMPD-LLDFQKPYARKREELADWDTEGD  370 (563)
T ss_pred             hhcEEEEECCCHH--HHHHHHHHHHHHHHcCCChhHhcCeEEEEcCCCeEeCCCCc-chHHHHHHhhhcccccccccccC
Confidence            9999999999999  99999999996433          445788 9999999986 543 33333332          2


Q ss_pred             chhhccccCCC--ceEEeecC-CCcchhh
Q psy14377        764 LRITKTRLSDN--TILFQGSG-EGTASVA  789 (848)
Q Consensus       764 ~r~~~~~~~~~--~~~~~~s~-~~~~~~~  789 (848)
                      ..+|+++++.+  |+|+|+|+ .|+-+=.
T Consensus       371 ~~~L~e~v~~~kPtvLIG~S~~~g~Ft~e  399 (563)
T PRK13529        371 VISLLEVVRNVKPTVLIGVSGQPGAFTEE  399 (563)
T ss_pred             CCCHHHHHhccCCCEEEEecCCCCCCCHH
Confidence            25899999999  99999998 4554433

>PLN03129 NADP-dependent malic enzyme; Provisional

Probab=100.00  E-value=7.9e-104  Score=891.02  Aligned_cols=359  Identities=50%  Similarity=0.796  Sum_probs=335.8

Q ss_pred             CCcchhhh-hhhccccccHHHHhhhcccccCcccccchhHHHHHhhccccccCCChhhHHHHHHhhcccceeEEEeccCc
Q psy14377        307 APVKNLAD-VVKTGMAFSIEERQALGIHGLLPAAVKSQDEQLHLCKLNVDRYEDPLNKYIYLQALAVKTDIRAIVVTDGE  385 (848)
Q Consensus       307 ~~~~~l~~-~~n~g~~~~~~er~~~~~~G~~p~~v~~~~~q~~~~~~~~~~~~~~~~~~~~L~~l~~~~~~~~~~~~d~~  385 (848)
                      +++..|++ .+|||++||.+||+++|++|+||+.|+|+|+|++||+.++++++++++||+||.+|+++          |+
T Consensus        41 ~G~~ll~~p~~NKgtaFt~~ER~~lgl~GLlP~~v~t~e~Q~~R~~~~~~~~~~~l~ky~~L~~L~~~----------Ne  110 (581)
T PLN03129         41 SGYDLLRDPRYNKGLAFTETERDRLGLRGLLPPAVLSQELQVKRFMENLRALESPLAKYRALMDLQER----------NE  110 (581)
T ss_pred             cchhhhcCcccccccCCCHHHHhhcCCccCCCCCcCCHHHHHHHHHHHHhccCCcHHHHHHHHHHHhh----------Cc
Confidence            46677777 89999999999999999999999999999999999999999999999999999999998          77


Q ss_pred             eecccccCCCCCCCcccccccHHHHHcCCCcCccCceeeEEccccccccCCCCCCCHHHHHHHHhcCCCceEEecCCCCC
Q psy14377        386 RILGLGDLGAYGMGIPVGKLSLYTALAGIKPHQCLPITLDVGTNWRRAAAIPQVFTADILKDMAAFNKRPIIFALSNPTS  465 (848)
Q Consensus       386 ~l~g~~~~g~~~~~~~~g~~~L~~al~g~kP~~~~~~~v~iG~~~~~~S~~~g~FTeevvk~Ma~~~~rPIIFaLSNPt~  465 (848)
                      +|                                                                              
T Consensus       111 ~L------------------------------------------------------------------------------  112 (581)
T PLN03129        111 RL------------------------------------------------------------------------------  112 (581)
T ss_pred             cc------------------------------------------------------------------------------
Confidence            66                                                                              


Q ss_pred             ccCCCHHHHhccCCCcEEEEeCCCCCCcccCCeEEecccchhhccCCeEecchhhhHHHhhccccccCccceeeccCccc
Q psy14377        466 KAECTAEQAYVNTDGRGVFASGSPFDPVTYKGKTFTPGQEYVVELMPIVYTPTVGLACQKYGLIFRRPRGLFISIHDKGH  545 (848)
Q Consensus       466 ~~E~tpe~a~~~T~G~ai~AtGsPf~pv~y~g~~~~~~q~nn~e~lPvvYTPGVG~acl~~~~i~r~p~gm~L~~~d~g~  545 (848)
                                                  ||+     ..+.|..++||++||||||++|++++++||+|+|||+|++|+|+
T Consensus       113 ----------------------------fy~-----ll~~~~~e~lpiiYTPtVg~ac~~~s~~~r~prGlyis~~d~~~  159 (581)
T PLN03129        113 ----------------------------FYR-----VLIDNIEELLPIVYTPTVGEACQKYGSLFRRPRGLYISLKDKGR  159 (581)
T ss_pred             ----------------------------chh-----hhhcCHHHhCCeeeCCcHHHHHHHHHHhhcCCCceeecccCHHH
Confidence                                        666     88899999999999999999999999999999999999999999


Q ss_pred             HHHHHhcCCCCCccEEEEecCceeeccCCCCCCCCCccccceeeeeecCCCCCCceeeEEeeccCCcccccCCccccccc
Q psy14377        546 ISEVLRNWPETDIRAIVVTDGERILGLGDLGAYGMGIPVGKLSLYTALAGIKPHQCLPITLDVGTNTQQLLDDPLYIGLR  625 (848)
Q Consensus       546 i~eiL~Nwp~~d~~viVVTDG~rILGLGDlG~~gmgIpvGKl~Ly~a~aGI~p~~~LPv~LDvGTnn~~ll~Dp~y~g~r  625 (848)
                      ++++|+|||.+++++||||||+|||||||+|++|||||+||++|||+||||||++|||||||+|||||+||+||+|+|+|
T Consensus       160 i~~~l~n~p~~~v~viVVTDG~rILGLGDlG~~Gm~I~~GKl~Ly~a~aGI~P~~~lPI~LDvGTnNe~LL~DP~YlG~r  239 (581)
T PLN03129        160 VLSMLKNWPERDVQVIVVTDGERILGLGDLGVQGMGIPVGKLDLYTAAGGIRPSAVLPVCIDVGTNNEKLLNDPFYIGLR  239 (581)
T ss_pred             HHHHHhcCCCcCceEEEEecCcceeeccccCCCccccchhHHHHHHhhcCCChhhccceEEecCCCchhhccCccccCcC
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             ccCCCCcchhHHHHHHHHHHHHhhCCceeeeeecCCCcchHHHHHHHcccCceeccCCchHHHHHHHHHHHHHhhhCCcC
Q psy14377        626 QRRTTGQAYDDFIEEFMQAVVARYGQHVLIQFEDFANHSAFRFLDTYRNRYCVFNDDIQGTASVAVAGLLASLRITKTRL  705 (848)
Q Consensus       626 ~~R~~g~~y~~fvdefv~av~~~fGp~~~IqfEDf~~~naf~lL~ryr~~~~~FnDDiQGTaaV~LAgllaAlr~t~~~l  705 (848)
                      |+|++|++|++|+||||++++.+|||+++||||||+++|||++|+|||+++|||||||||||+|+||||+||+|++|++|
T Consensus       240 ~~Rv~g~eY~~~~defv~av~~~fGp~~~I~~EDf~~~~af~iL~ryr~~i~~FnDDiQGTaaV~lAgll~A~r~~g~~l  319 (581)
T PLN03129        240 QPRLTGEEYDELVDEFMEAVKQRWGPKVLVQFEDFANKNAFRLLQRYRTTHLCFNDDIQGTAAVALAGLLAALRATGGDL  319 (581)
T ss_pred             CCCCchhhHHHhHHHHHHHHHHHhCCccEEehhhcCCccHHHHHHHhccCCCEeccccchHHHHHHHHHHHHHHHhCCch
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCceEEecCcchhhHHHHHHHHHHHhccc-----------cccccc-CceecCCCCCCchH-HHhhhcc-ccchhhcccc
Q psy14377        706 SDNTILFQGAGEGTASVAVAGLLASLRIT-----------KTRLSD-NTILFQGAGEGTAS-VAIAGLL-ASLRITKTRL  771 (848)
Q Consensus       706 ~d~riv~~GAG~A~~g~giA~ll~~~~~~-----------~~~~~d-~g~i~~~r~~~~~~-~~~~~~~-~~~r~~~~~~  771 (848)
                      +||||||+|||+|  |+|||+||+.+|++           +..++| +|+|+++|+.+++. +..+.-. .+..+|++++
T Consensus       320 ~d~riv~~GAGsA--gigia~ll~~~~~~~~Gls~eeA~~~i~~vD~~GLi~~~r~~~l~~~k~~fa~~~~~~~~L~e~v  397 (581)
T PLN03129        320 ADQRILFAGAGEA--GTGIAELIALAMSRQTGISEEEARKRIWLVDSKGLVTKSRKDSLQPFKKPFAHDHEPGASLLEAV  397 (581)
T ss_pred             hhceEEEECCCHH--HHHHHHHHHHHHHhhcCCChhhhcCcEEEEcCCCeEeCCCCccChHHHHHHHhhcccCCCHHHHH
Confidence            9999999999999  99999999997663           445778 99999999876664 2222222 2457899999


Q ss_pred             CC--CceEEeecCC-Ccchh
Q psy14377        772 SD--NTILFQGSGE-GTASV  788 (848)
Q Consensus       772 ~~--~~~~~~~s~~-~~~~~  788 (848)
                      +.  +|+|+|+|+. |+-+=
T Consensus       398 ~~vkptvLIG~S~~~g~Ft~  417 (581)
T PLN03129        398 KAIKPTVLIGLSGVGGTFTK  417 (581)
T ss_pred             hccCCCEEEEecCCCCCCCH
Confidence            99  9999999974 55443

>PTZ00317 NADP-dependent malic enzyme; Provisional

Probab=100.00  E-value=3.5e-103  Score=882.80  Aligned_cols=357  Identities=43%  Similarity=0.753  Sum_probs=332.3

Q ss_pred             CCcchhhh-hhhccccccHHHHhhhcccccCcccccchhHHHHHhhccccccCCChhhHHHHHHhhcccceeEEEeccCc
Q psy14377        307 APVKNLAD-VVKTGMAFSIEERQALGIHGLLPAAVKSQDEQLHLCKLNVDRYEDPLNKYIYLQALAVKTDIRAIVVTDGE  385 (848)
Q Consensus       307 ~~~~~l~~-~~n~g~~~~~~er~~~~~~G~~p~~v~~~~~q~~~~~~~~~~~~~~~~~~~~L~~l~~~~~~~~~~~~d~~  385 (848)
                      ++...|++ .+|||++||.+||+++|++|+||+.|+|+|+|++||+.++++++++++||+||.+|+++          |+
T Consensus        18 ~G~~lL~~p~~NKgtAFt~~ER~~l~l~GLlPp~v~t~e~Q~~R~~~~~~~~~~~l~Ky~~L~~L~~~----------Ne   87 (559)
T PTZ00317         18 RGVDVLRNRFLNKGTAFTAEEREHLGIEGLLPPTVETLEQQVERLWTQFNRIETPINKYQFLRNIHDT----------NE   87 (559)
T ss_pred             cchhhhcCcccccccCCCHHHHHhcCCCCCCCCCccCHHHHHHHHHHHHhhCCChHHHHHHHHHHhhc----------Cc
Confidence            45666777 88999999999999999999999999999999999999999999999999999999998          77


Q ss_pred             eecccccCCCCCCCcccccccHHHHHcCCCcCccCceeeEEccccccccCCCCCCCHHHHHHHHhcCCCceEEecCCCCC
Q psy14377        386 RILGLGDLGAYGMGIPVGKLSLYTALAGIKPHQCLPITLDVGTNWRRAAAIPQVFTADILKDMAAFNKRPIIFALSNPTS  465 (848)
Q Consensus       386 ~l~g~~~~g~~~~~~~~g~~~L~~al~g~kP~~~~~~~v~iG~~~~~~S~~~g~FTeevvk~Ma~~~~rPIIFaLSNPt~  465 (848)
                      +|                                                                              
T Consensus        88 ~L------------------------------------------------------------------------------   89 (559)
T PTZ00317         88 TL------------------------------------------------------------------------------   89 (559)
T ss_pred             hH------------------------------------------------------------------------------
Confidence            66                                                                              


Q ss_pred             ccCCCHHHHhccCCCcEEEEeCCCCCCcccCCeEEecccchhhccCCeEecchhhhHHHhhccccccCccceeeccCccc
Q psy14377        466 KAECTAEQAYVNTDGRGVFASGSPFDPVTYKGKTFTPGQEYVVELMPIVYTPTVGLACQKYGLIFRRPRGLFISIHDKGH  545 (848)
Q Consensus       466 ~~E~tpe~a~~~T~G~ai~AtGsPf~pv~y~g~~~~~~q~nn~e~lPvvYTPGVG~acl~~~~i~r~p~gm~L~~~d~g~  545 (848)
                                                  ||+     ..+.|..++||++||||||++|++++.+|+.|+|||++++|+|+
T Consensus        90 ----------------------------fy~-----ll~~~~ee~lpivYTPtVg~ac~~~s~~~r~p~Gly~s~~drg~  136 (559)
T PTZ00317         90 ----------------------------FYA-----LLLKYLKELLPIIYTPTVGEACQNYSNLFQRDRGLYLSRAHKGK  136 (559)
T ss_pred             ----------------------------HHH-----HHHhCHHHhcceecCcchHHHHHHHHhcccccCceEEeecCcch
Confidence                                        666     88899999999999999999999999999999999999999999


Q ss_pred             HHHHHhcCCCCCccEEEEecCceeeccCCCCCCCCCccccceeeeeecCCCCCCceeeEEeeccCCcccccCCccccccc
Q psy14377        546 ISEVLRNWPETDIRAIVVTDGERILGLGDLGAYGMGIPVGKLSLYTALAGIKPHQCLPITLDVGTNTQQLLDDPLYIGLR  625 (848)
Q Consensus       546 i~eiL~Nwp~~d~~viVVTDG~rILGLGDlG~~gmgIpvGKl~Ly~a~aGI~p~~~LPv~LDvGTnn~~ll~Dp~y~g~r  625 (848)
                      ++++|+|||.++|++||||||||||||||+|++|||||+||++|||+||||||++|||||||+|||||+||+||+|+|+|
T Consensus       137 i~~~l~Nwp~~~v~viVVTDG~rILGLGDlG~~Gm~I~~GKl~Ly~a~aGI~P~~~lPI~LDvGTnN~~LL~DPlYlG~r  216 (559)
T PTZ00317        137 IREILKNWPYDNVDVIVITDGSRILGLGDLGANGMGISIGKLSLYVAGGGINPSRVLPVVLDVGTNNEKLLNDPLYLGLR  216 (559)
T ss_pred             HHHHHhcCCccCceEEEEeccccccccCCcccccccccccHHHHHHhhcCCChhhccceEEecCCChhhhccCccccccc
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             ccCCCCcchhHHHHHHHHHHHHhhCCceeeeeecCCCcchHHHHHHHcccCceeccCCchHHHHHHHHHHHHHhhhCCcC
Q psy14377        626 QRRTTGQAYDDFIEEFMQAVVARYGQHVLIQFEDFANHSAFRFLDTYRNRYCVFNDDIQGTASVAVAGLLASLRITKTRL  705 (848)
Q Consensus       626 ~~R~~g~~y~~fvdefv~av~~~fGp~~~IqfEDf~~~naf~lL~ryr~~~~~FnDDiQGTaaV~LAgllaAlr~t~~~l  705 (848)
                      |+|++|++|++|+||||++++.+| |+++||||||+++|||++|+|||+++|||||||||||+|+|||||||+|++|++|
T Consensus       217 ~~R~~g~eY~~f~defv~av~~~~-P~~~Iq~EDf~~~naf~iL~kyr~~i~~FnDDiQGTaaV~lAgll~Alr~~g~~l  295 (559)
T PTZ00317        217 EKRLDDDEYYELLDEFMEAVSSRW-PNAVVQFEDFSNNHCFDLLERYQNKYRCFNDDIQGTGAVIAAGFLNALKLSGVPP  295 (559)
T ss_pred             CCCCChhhHHHHHHHHHHHHHHhC-CCeEEehhhcCCccHHHHHHHhccCCCEecccchhHHHHHHHHHHHHHHHhCCCh
Confidence            999999999999999999999999 9999999999999999999999999999999999999999999999999999999


Q ss_pred             CCceEEecCcchhhHHHHHHHHHHHhc----c------ccccccc-CceecCCCCCCchH-HHhhhccc------cchhh
Q psy14377        706 SDNTILFQGAGEGTASVAVAGLLASLR----I------TKTRLSD-NTILFQGAGEGTAS-VAIAGLLA------SLRIT  767 (848)
Q Consensus       706 ~d~riv~~GAG~A~~g~giA~ll~~~~----~------~~~~~~d-~g~i~~~r~~~~~~-~~~~~~~~------~~r~~  767 (848)
                      +||||||+|||+|  |+|||+||+++|    +      ++..++| +|+|+++|+..++. +..++-.+      ...+|
T Consensus       296 ~d~riv~~GAGsA--giGia~ll~~~m~~~Gls~eeA~~~i~~vD~~GLl~~~r~~~l~~~k~~fa~~~~~~~~~~~~~L  373 (559)
T PTZ00317        296 EEQRIVFFGAGSA--AIGVANNIADLAAEYGVTREEALKSFYLVDSKGLVTTTRGDKLAKHKVPFARTDISAEDSSLKTL  373 (559)
T ss_pred             hhcEEEEECCCHH--HHHHHHHHHHHHHHcCCChhHhcCeEEEEcCCCeEeCCCCccccHHHHHHhccccccccccCCCH
Confidence            9999999999999  999999999754    4      3445778 99999999876654 33233321      14689


Q ss_pred             ccccCCC--ceEEeecC-CCcch
Q psy14377        768 KTRLSDN--TILFQGSG-EGTAS  787 (848)
Q Consensus       768 ~~~~~~~--~~~~~~s~-~~~~~  787 (848)
                      +++++.+  |+++|+|+ .|+-+
T Consensus       374 ~e~v~~~KPtvLIG~S~~~g~Ft  396 (559)
T PTZ00317        374 EDVVRFVKPTALLGLSGVGGVFT  396 (559)
T ss_pred             HHHHhccCCCEEEEecCCCCCCC
Confidence            9999999  99999997 45544

>PTZ00317 NADP-dependent malic enzyme; Provisional

Probab=100.00  E-value=5.2e-66  Score=582.04  Aligned_cols=260  Identities=32%  Similarity=0.486  Sum_probs=233.4

Q ss_pred             cccccccCCCCCCCCccccccccccchhhhhHHhhhcCCCCeE---EEchhhHHHHHHHHHHHHHhCCcCCCceEEEecc
Q psy14377        172 DSKGLIVKDRPEGGVTGHKVHYAKKHAPVKNLADVVKTVKPSI---LIGESCVNDVAGLLASLRITKTRLSDNTILFQGA  248 (848)
Q Consensus       172 ~~~G~lYPkppd~gIr~edIavAk~fe~ek~Lle~lr~~iPvF---qhGTA~V~~lAgll~Al~~tg~~l~d~riv~~GA  248 (848)
                      +..-..||+   ..|++||+..+.||.+.+    +|+..+|+|   ||||++|+ ||||+||+|++|++|+||||||+||
T Consensus       234 ~av~~~~P~---~~Iq~EDf~~~naf~iL~----kyr~~i~~FnDDiQGTaaV~-lAgll~Alr~~g~~l~d~riv~~GA  305 (559)
T PTZ00317        234 EAVSSRWPN---AVVQFEDFSNNHCFDLLE----RYQNKYRCFNDDIQGTGAVI-AAGFLNALKLSGVPPEEQRIVFFGA  305 (559)
T ss_pred             HHHHHhCCC---eEEehhhcCCccHHHHHH----HhccCCCEecccchhHHHHH-HHHHHHHHHHhCCChhhcEEEEECC
Confidence            335555662   469999999999988777    677789999   99999999 9999999999999999999999999


Q ss_pred             chHHHHHHHHHHHHHHhcCCChhhhcCcEEEEcCCCcccCCCCCCCCCccccccccccCCcchhhhhhhccccccHHHHh
Q psy14377        249 GEASLGIADLCVMAMQKEGTSEQDARDKIWMVDSKGLIVKDRPEGGVTGHKVHYAKKHAPVKNLADVVKTGMAFSIEERQ  328 (848)
Q Consensus       249 GaAg~gia~ll~~~m~~~G~s~~eA~~~i~~vD~kGLi~~~r~~~~l~~~k~~~a~~~~~~~~l~~~~n~g~~~~~~er~  328 (848)
                      |+||+|||+||+++|+++|+|+|||+++|||+|++|||+++|.+ +++++|.+||+......                  
T Consensus       306 GsAgiGia~ll~~~m~~~Gls~eeA~~~i~~vD~~GLl~~~r~~-~l~~~k~~fa~~~~~~~------------------  366 (559)
T PTZ00317        306 GSAAIGVANNIADLAAEYGVTREEALKSFYLVDSKGLVTTTRGD-KLAKHKVPFARTDISAE------------------  366 (559)
T ss_pred             CHHHHHHHHHHHHHHHHcCCChhHhcCeEEEEcCCCeEeCCCCc-cccHHHHHHhccccccc------------------
Confidence            99999999999999999999999999999999999999999975 48999999998632100                  


Q ss_pred             hhcccccCcccccchhHHHHHhhccccccCCChhhHHHHHHhhcccceeEEEeccCceecccccCCCCCCCcccccccHH
Q psy14377        329 ALGIHGLLPAAVKSQDEQLHLCKLNVDRYEDPLNKYIYLQALAVKTDIRAIVVTDGERILGLGDLGAYGMGIPVGKLSLY  408 (848)
Q Consensus       329 ~~~~~G~~p~~v~~~~~q~~~~~~~~~~~~~~~~~~~~L~~l~~~~~~~~~~~~d~~~l~g~~~~g~~~~~~~~g~~~L~  408 (848)
                           +                                                 +                  ...+|.
T Consensus       367 -----~-------------------------------------------------~------------------~~~~L~  374 (559)
T PTZ00317        367 -----D-------------------------------------------------S------------------SLKTLE  374 (559)
T ss_pred             -----c-------------------------------------------------c------------------cCCCHH
Confidence                 0                                                 0                  012688


Q ss_pred             HHHcCCCcCccCceeeEEccccccccCCCCCCCHHHHHHHHhcCCCceEEecCCCCCccCCCHHHHhccCCCcEEEEeCC
Q psy14377        409 TALAGIKPHQCLPITLDVGTNWRRAAAIPQVFTADILKDMAAFNKRPIIFALSNPTSKAECTAEQAYVNTDGRGVFASGS  488 (848)
Q Consensus       409 ~al~g~kP~~~~~~~v~iG~~~~~~S~~~g~FTeevvk~Ma~~~~rPIIFaLSNPt~~~E~tpe~a~~~T~G~ai~AtGs  488 (848)
                      ++++++||      ||+||+     |++||+|||||||+|+++|+|||||||||||++|||||||||+||+|||||||||
T Consensus       375 e~v~~~KP------tvLIG~-----S~~~g~Ft~evv~~Ma~~~~rPIIFaLSNPt~~aE~tpeda~~~T~Grai~AtGs  443 (559)
T PTZ00317        375 DVVRFVKP------TALLGL-----SGVGGVFTEEVVKTMASNVERPIIFPLSNPTSKAECTAEDAYKWTNGRAIVASGS  443 (559)
T ss_pred             HHHhccCC------CEEEEe-----cCCCCCCCHHHHHHHHhcCCCCEEEECCCCCCCCCcCHHHHHhhccCCEEEEECC
Confidence            99999999      678997     8999999999999999999999999999999999999999999999999999999


Q ss_pred             CCCCcccCCeEEecccchhhccCCeEecchhhhHHHhhccccccCccceeeccCcccHHHHHhcC
Q psy14377        489 PFDPVTYKGKTFTPGQEYVVELMPIVYTPTVGLACQKYGLIFRRPRGLFISIHDKGHISEVLRNW  553 (848)
Q Consensus       489 Pf~pv~y~g~~~~~~q~nn~e~lPvvYTPGVG~acl~~~~i~r~p~gm~L~~~d~g~i~eiL~Nw  553 (848)
                      ||+||+|+||+++|+|+||+     +.|||+|+|++.+++. ++|++||++      .++.|++.
T Consensus       444 pf~pv~~~G~~~~p~Q~NN~-----~iFPGiglG~l~~~a~-~Itd~m~~a------AA~aLA~~  496 (559)
T PTZ00317        444 PFPPVTLNGKTIQPSQGNNL-----YVFPGVGLGCAIAQPS-YIPDEMLIA------AAASLATL  496 (559)
T ss_pred             CCCCcccCCeeeccCcCcce-----eeccchhhhhHhhccc-CCCHHHHHH------HHHHHHhh
Confidence            99999999999999999999     5689999999999985 799999997      67788875

>PRK13529 malate dehydrogenase; Provisional

Probab=100.00  E-value=9.7e-66  Score=580.18  Aligned_cols=265  Identities=36%  Similarity=0.561  Sum_probs=237.4

Q ss_pred             cccccccccCCCCCCCCccccccccccchhhhhHHhhhcCCCCeE---EEchhhHHHHHHHHHHHHHhCCcCCCceEEEe
Q psy14377        170 MVDSKGLIVKDRPEGGVTGHKVHYAKKHAPVKNLADVVKTVKPSI---LIGESCVNDVAGLLASLRITKTRLSDNTILFQ  246 (848)
Q Consensus       170 ~~~~~G~lYPkppd~gIr~edIavAk~fe~ek~Lle~lr~~iPvF---qhGTA~V~~lAgll~Al~~tg~~l~d~riv~~  246 (848)
                      +|+..-..||+  . .|++||+..++||.+++    +|++.+|+|   ||||++|+ ||||+||+|++|++|+||||||+
T Consensus       230 fv~av~~~~P~--~-~I~~EDf~~~~af~iL~----ryr~~i~~FnDDiQGTaaV~-LAgll~A~r~~g~~l~d~riv~~  301 (563)
T PRK13529        230 FVQAVKRRFPN--A-LLQFEDFAQKNARRILE----RYRDEICTFNDDIQGTGAVT-LAGLLAALKITGEPLSDQRIVFL  301 (563)
T ss_pred             HHHHHHHhCCC--e-EEehhhcCCchHHHHHH----HhccCCCeeccccchHHHHH-HHHHHHHHHHhCCChhhcEEEEE
Confidence            44456666773  2 79999999999998877    577789999   99999999 99999999999999999999999


Q ss_pred             ccchHHHHHHHHHHHHHHhcCCChhhhcCcEEEEcCCCcccCCCCCCCCCccccccccccCCcchhhhhhhccccccHHH
Q psy14377        247 GAGEASLGIADLCVMAMQKEGTSEQDARDKIWMVDSKGLIVKDRPEGGVTGHKVHYAKKHAPVKNLADVVKTGMAFSIEE  326 (848)
Q Consensus       247 GAGaAg~gia~ll~~~m~~~G~s~~eA~~~i~~vD~kGLi~~~r~~~~l~~~k~~~a~~~~~~~~l~~~~n~g~~~~~~e  326 (848)
                      |||+||+|||+||+++|+++|+|+|||+++|||||++|||+++|++  ++++|.+|+++.++...+              
T Consensus       302 GAGsAgiGia~ll~~~~~~~Gl~~eeA~~~i~~vD~~GLl~~~r~~--l~~~k~~fa~~~~~~~~~--------------  365 (563)
T PRK13529        302 GAGSAGCGIADQIVAAMVREGLSEEEARKRFFMVDRQGLLTDDMPD--LLDFQKPYARKREELADW--------------  365 (563)
T ss_pred             CCCHHHHHHHHHHHHHHHHcCCChhHhcCeEEEEcCCCeEeCCCCc--chHHHHHHhhhccccccc--------------
Confidence            9999999999999999999999999999999999999999999975  999999999875331110              


Q ss_pred             HhhhcccccCcccccchhHHHHHhhccccccCCChhhHHHHHHhhcccceeEEEeccCceecccccCCCCCCCccccccc
Q psy14377        327 RQALGIHGLLPAAVKSQDEQLHLCKLNVDRYEDPLNKYIYLQALAVKTDIRAIVVTDGERILGLGDLGAYGMGIPVGKLS  406 (848)
Q Consensus       327 r~~~~~~G~~p~~v~~~~~q~~~~~~~~~~~~~~~~~~~~L~~l~~~~~~~~~~~~d~~~l~g~~~~g~~~~~~~~g~~~  406 (848)
                                                     +.                                         .-++.+
T Consensus       366 -------------------------------~~-----------------------------------------~~~~~~  373 (563)
T PRK13529        366 -------------------------------DT-----------------------------------------EGDVIS  373 (563)
T ss_pred             -------------------------------cc-----------------------------------------ccCCCC
Confidence                                           00                                         001237


Q ss_pred             HHHHHcCCCcCccCceeeEEccccccccCCCCCCCHHHHHHHHhcCCCceEEecCCCCCccCCCHHHHhccCCCcEEEEe
Q psy14377        407 LYTALAGIKPHQCLPITLDVGTNWRRAAAIPQVFTADILKDMAAFNKRPIIFALSNPTSKAECTAEQAYVNTDGRGVFAS  486 (848)
Q Consensus       407 L~~al~g~kP~~~~~~~v~iG~~~~~~S~~~g~FTeevvk~Ma~~~~rPIIFaLSNPt~~~E~tpe~a~~~T~G~ai~At  486 (848)
                      |.++++++||      |++||+     |++||+|||||||+|+++|+|||||||||||+++||||||||+||+|||||||
T Consensus       374 L~e~v~~~kP------tvLIG~-----S~~~g~Ft~evv~~Ma~~~erPIIFaLSNPt~~aE~tpe~a~~~T~Grai~At  442 (563)
T PRK13529        374 LLEVVRNVKP------TVLIGV-----SGQPGAFTEEIVKEMAAHCERPIIFPLSNPTSRAEATPEDLIAWTDGRALVAT  442 (563)
T ss_pred             HHHHHhccCC------CEEEEe-----cCCCCCCCHHHHHHHHhcCCCCEEEECCCcCCCcccCHHHHHHhhcCCEEEEE
Confidence            8999999999      678997     89999999999999999999999999999999999999999999999999999


Q ss_pred             CCCCCCcccCCeEEecccchhhccCCeEecchhhhHHHhhccccccCccceeeccCcccHHHHHhcC
Q psy14377        487 GSPFDPVTYKGKTFTPGQEYVVELMPIVYTPTVGLACQKYGLIFRRPRGLFISIHDKGHISEVLRNW  553 (848)
Q Consensus       487 GsPf~pv~y~g~~~~~~q~nn~e~lPvvYTPGVG~acl~~~~i~r~p~gm~L~~~d~g~i~eiL~Nw  553 (848)
                      ||||+||+|+||+++|+|+||+     +.|||+|+|++.+++. ++|++||++      .++.|++.
T Consensus       443 Gspf~pv~~~G~~~~p~Q~NN~-----~iFPGiglGa~~~~a~-~Itd~m~~a------AA~alA~~  497 (563)
T PRK13529        443 GSPFAPVEYNGKTYPIGQCNNA-----YIFPGLGLGVIASGAR-RVTDGMLMA------AAHALADC  497 (563)
T ss_pred             CCCCCCeeeCCeEeccCcCcce-----eecccchhhhhhcCCc-CCCHHHHHH------HHHHHHhh
Confidence            9999999999999999999999     5689999999999985 799999997      77888875

>PLN03129 NADP-dependent malic enzyme; Provisional

Probab=100.00  E-value=1.9e-65  Score=579.39  Aligned_cols=245  Identities=45%  Similarity=0.715  Sum_probs=226.4

Q ss_pred             CCccccccccccchhhhhHHhhhcCCCCeE---EEchhhHHHHHHHHHHHHHhCCcCCCceEEEeccchHHHHHHHHHHH
Q psy14377        185 GVTGHKVHYAKKHAPVKNLADVVKTVKPSI---LIGESCVNDVAGLLASLRITKTRLSDNTILFQGAGEASLGIADLCVM  261 (848)
Q Consensus       185 gIr~edIavAk~fe~ek~Lle~lr~~iPvF---qhGTA~V~~lAgll~Al~~tg~~l~d~riv~~GAGaAg~gia~ll~~  261 (848)
                      .|++||++.++||.+++    +|+..+|+|   ||||++|+ ||||+||+|++|++|+||||||+|||+||+|||+||+.
T Consensus       268 ~I~~EDf~~~~af~iL~----ryr~~i~~FnDDiQGTaaV~-lAgll~A~r~~g~~l~d~riv~~GAGsAgigia~ll~~  342 (581)
T PLN03129        268 LVQFEDFANKNAFRLLQ----RYRTTHLCFNDDIQGTAAVA-LAGLLAALRATGGDLADQRILFAGAGEAGTGIAELIAL  342 (581)
T ss_pred             EEehhhcCCccHHHHHH----HhccCCCEeccccchHHHHH-HHHHHHHHHHhCCchhhceEEEECCCHHHHHHHHHHHH
Confidence            59999999999998887    566789999   99999999 99999999999999999999999999999999999999


Q ss_pred             HHHh-cCCChhhhcCcEEEEcCCCcccCCCCCCCCCccccccccccCCcchhhhhhhccccccHHHHhhhcccccCcccc
Q psy14377        262 AMQK-EGTSEQDARDKIWMVDSKGLIVKDRPEGGVTGHKVHYAKKHAPVKNLADVVKTGMAFSIEERQALGIHGLLPAAV  340 (848)
Q Consensus       262 ~m~~-~G~s~~eA~~~i~~vD~kGLi~~~r~~~~l~~~k~~~a~~~~~~~~l~~~~n~g~~~~~~er~~~~~~G~~p~~v  340 (848)
                      +|++ +|+|++||+++||++|++|||+++|.+ +++++|++|++..++                                
T Consensus       343 ~~~~~~Gls~eeA~~~i~~vD~~GLi~~~r~~-~l~~~k~~fa~~~~~--------------------------------  389 (581)
T PLN03129        343 AMSRQTGISEEEARKRIWLVDSKGLVTKSRKD-SLQPFKKPFAHDHEP--------------------------------  389 (581)
T ss_pred             HHHhhcCCChhhhcCcEEEEcCCCeEeCCCCc-cChHHHHHHHhhccc--------------------------------
Confidence            9998 499999999999999999999999975 388888888875211                                


Q ss_pred             cchhHHHHHhhccccccCCChhhHHHHHHhhcccceeEEEeccCceecccccCCCCCCCcccccccHHHHHcCCCcCccC
Q psy14377        341 KSQDEQLHLCKLNVDRYEDPLNKYIYLQALAVKTDIRAIVVTDGERILGLGDLGAYGMGIPVGKLSLYTALAGIKPHQCL  420 (848)
Q Consensus       341 ~~~~~q~~~~~~~~~~~~~~~~~~~~L~~l~~~~~~~~~~~~d~~~l~g~~~~g~~~~~~~~g~~~L~~al~g~kP~~~~  420 (848)
                                                                                     ..+|.++++++||    
T Consensus       390 ---------------------------------------------------------------~~~L~e~v~~vkp----  402 (581)
T PLN03129        390 ---------------------------------------------------------------GASLLEAVKAIKP----  402 (581)
T ss_pred             ---------------------------------------------------------------CCCHHHHHhccCC----
Confidence                                                                           0157889999999    


Q ss_pred             ceeeEEccccccccCCCCCCCHHHHHHHHhcCCCceEEecCCCCCccCCCHHHHhccCCCcEEEEeCCCCCCcccCCeEE
Q psy14377        421 PITLDVGTNWRRAAAIPQVFTADILKDMAAFNKRPIIFALSNPTSKAECTAEQAYVNTDGRGVFASGSPFDPVTYKGKTF  500 (848)
Q Consensus       421 ~~~v~iG~~~~~~S~~~g~FTeevvk~Ma~~~~rPIIFaLSNPt~~~E~tpe~a~~~T~G~ai~AtGsPf~pv~y~g~~~  500 (848)
                        ||+||+     |++||+|||||||+|+++|+|||||||||||++|||+|||||+||+|+|||||||||+||+|+||++
T Consensus       403 --tvLIG~-----S~~~g~Ft~evi~~Ma~~~~rPIIFaLSNPt~~~E~~pe~a~~~T~G~ai~AtGSPf~pv~~~Gr~~  475 (581)
T PLN03129        403 --TVLIGL-----SGVGGTFTKEVLEAMASLNERPIIFALSNPTSKAECTAEEAYTWTGGRAIFASGSPFDPVEYNGKTF  475 (581)
T ss_pred             --CEEEEe-----cCCCCCCCHHHHHHHHhcCCCCEEEECCCCCCCcCcCHHHHHHhhcCCEEEEeCCCCCCeeeCCeee
Confidence              678997     8999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             ecccchhhccCCeEecchhhhHHHhhccccccCccceeeccCcccHHHHHhcC
Q psy14377        501 TPGQEYVVELMPIVYTPTVGLACQKYGLIFRRPRGLFISIHDKGHISEVLRNW  553 (848)
Q Consensus       501 ~~~q~nn~e~lPvvYTPGVG~acl~~~~i~r~p~gm~L~~~d~g~i~eiL~Nw  553 (848)
                      +|+|+||+     +.|||+|++++.+++. ++|++||++      ..+.|++.
T Consensus       476 ~p~Q~NN~-----~iFPGiglGal~~~a~-~Itd~m~~a------AA~aLA~~  516 (581)
T PLN03129        476 HPGQANNA-----YIFPGIGLGALLSGAI-RVTDDMLLA------AAEALAAQ  516 (581)
T ss_pred             cCccccce-----eeccchhhHHHhcCCc-CCCHHHHHH------HHHHHHHh
Confidence            99999999     5689999999999985 799999997      77888875

>PF03949 Malic_M: Malic enzyme, NAD binding domain; InterPro: IPR012302 Malic enzymes (malate oxidoreductases) catalyse the oxidative decarboxylation of malate to form pyruvate [], a reaction important in a number of metabolic pathways - e

Probab=100.00  E-value=1.4e-65  Score=535.45  Aligned_cols=221  Identities=46%  Similarity=0.738  Sum_probs=189.8

Q ss_pred             EEchhhHHHHHHHHHHHHHhCCcCCCceEEEeccchHHHHHHHHHHHHHHhcCCChhhhcCcEEEEcCCCcccCCCCCCC
Q psy14377        215 LIGESCVNDVAGLLASLRITKTRLSDNTILFQGAGEASLGIADLCVMAMQKEGTSEQDARDKIWMVDSKGLIVKDRPEGG  294 (848)
Q Consensus       215 qhGTA~V~~lAgll~Al~~tg~~l~d~riv~~GAGaAg~gia~ll~~~m~~~G~s~~eA~~~i~~vD~kGLi~~~r~~~~  294 (848)
                      ||||++|+ ||||+||+|++|++|+||||||+|||+||+|||+||+++|+++|+|++||++||||+|++|||+++|++  
T Consensus         1 iqGTaaV~-lAgll~Al~~~g~~l~d~riv~~GAGsAg~gia~ll~~~~~~~G~~~~eA~~~i~lvD~~Gll~~~r~~--   77 (255)
T PF03949_consen    1 IQGTAAVV-LAGLLNALRVTGKKLSDQRIVFFGAGSAGIGIARLLVAAMVREGLSEEEARKRIWLVDSKGLLTDDRED--   77 (255)
T ss_dssp             CHHHHHHH-HHHHHHHHHHHTS-GGG-EEEEEB-SHHHHHHHHHHHHHHHCTTS-HHHHHTTEEEEETTEEEBTTTSS--
T ss_pred             CchhHHHH-HHHHHHHHHHhCCCHHHcEEEEeCCChhHHHHHHHHHHHHHHhcCCHHHHhccEEEEeccceEeccCcc--
Confidence            79999999 999999999999999999999999999999999999999999999999999999999999999999964  


Q ss_pred             CCccccccccccCCcchhhhhhhccccccHHHHhhhcccccCcccccchhHHHHHhhccccccCCChhhHHHHHHhhccc
Q psy14377        295 VTGHKVHYAKKHAPVKNLADVVKTGMAFSIEERQALGIHGLLPAAVKSQDEQLHLCKLNVDRYEDPLNKYIYLQALAVKT  374 (848)
Q Consensus       295 l~~~k~~~a~~~~~~~~l~~~~n~g~~~~~~er~~~~~~G~~p~~v~~~~~q~~~~~~~~~~~~~~~~~~~~L~~l~~~~  374 (848)
                      ++++|++|+++.++...                                                               
T Consensus        78 l~~~~~~~a~~~~~~~~---------------------------------------------------------------   94 (255)
T PF03949_consen   78 LNPHKKPFARKTNPEKD---------------------------------------------------------------   94 (255)
T ss_dssp             HSHHHHHHHBSSSTTT----------------------------------------------------------------
T ss_pred             CChhhhhhhccCccccc---------------------------------------------------------------
Confidence            89999999997643110                                                               


Q ss_pred             ceeEEEeccCceecccccCCCCCCCcccccccHHHHHcCCCcCccCceeeEEccccccccCCCCCCCHHHHHHHHhcCCC
Q psy14377        375 DIRAIVVTDGERILGLGDLGAYGMGIPVGKLSLYTALAGIKPHQCLPITLDVGTNWRRAAAIPQVFTADILKDMAAFNKR  454 (848)
Q Consensus       375 ~~~~~~~~d~~~l~g~~~~g~~~~~~~~g~~~L~~al~g~kP~~~~~~~v~iG~~~~~~S~~~g~FTeevvk~Ma~~~~r  454 (848)
                                                   ..+|.++++++||      |++||+     |++||+||||+||+|+++|+|
T Consensus        95 -----------------------------~~~L~eav~~~kP------tvLIG~-----S~~~g~ft~evv~~Ma~~~er  134 (255)
T PF03949_consen   95 -----------------------------WGSLLEAVKGAKP------TVLIGL-----SGQGGAFTEEVVRAMAKHNER  134 (255)
T ss_dssp             ------------------------------SSHHHHHHCH--------SEEEEC-----SSSTTSS-HHHHHHCHHHSSS
T ss_pred             -----------------------------ccCHHHHHHhcCC------CEEEEe-----cCCCCcCCHHHHHHHhccCCC
Confidence                                         1268899999999      678997     889999999999999999999


Q ss_pred             ceEEecCCCCCccCCCHHHHhccCCCcEEEEeCCCCCCcccCCeEEecccchhhccCCeEecchhhhHHHhhccccccCc
Q psy14377        455 PIIFALSNPTSKAECTAEQAYVNTDGRGVFASGSPFDPVTYKGKTFTPGQEYVVELMPIVYTPTVGLACQKYGLIFRRPR  534 (848)
Q Consensus       455 PIIFaLSNPt~~~E~tpe~a~~~T~G~ai~AtGsPf~pv~y~g~~~~~~q~nn~e~lPvvYTPGVG~acl~~~~i~r~p~  534 (848)
                      ||||||||||+++||||||||+||+|++||||||||+||+|+||+++|+|+||+|.     |||+|++++.+++. ++++
T Consensus       135 PIIF~LSNPt~~aE~~peda~~~t~g~ai~AtGSpf~pv~~~Gr~~~p~Q~NN~~i-----FPGiglG~l~~~a~-~Itd  208 (255)
T PF03949_consen  135 PIIFPLSNPTPKAECTPEDAYEWTDGRAIFATGSPFPPVEYNGRSDYPNQCNNSYI-----FPGIGLGALDSRAR-RITD  208 (255)
T ss_dssp             EEEEE-SSSCGGSSS-HHHHHHTTTSEEEEEESS----EEETSCEESSCE-SGGGT-----HHHHHHHHHHCTBS-S--H
T ss_pred             CEEEECCCCCCcccCCHHHHHhhCCceEEEecCCccCCeeeCCeEEecCCCCeeEe-----eccceeeeeecCCe-ecCH
Confidence            99999999999999999999999999999999999999999999999999999954     79999999999985 7999


Q ss_pred             cceeeccCcccHHHHHhcC
Q psy14377        535 GLFISIHDKGHISEVLRNW  553 (848)
Q Consensus       535 gm~L~~~d~g~i~eiL~Nw  553 (848)
                      +||++      ..+.|++.
T Consensus       209 ~M~~a------AA~aLA~~  221 (255)
T PF03949_consen  209 EMFLA------AAEALADL  221 (255)
T ss_dssp             HHHHH------HHHHHHHT
T ss_pred             HHHHH------HHHHHHHh
Confidence            99997      67788776

g. carbon dioxide released from the reaction may be used in sugar production during the Calvin cycle of photosynthesis []. There are 3 forms of the enzyme []: an NAD-dependent form that decarboxylates oxaloacetate; an NAD-dependent form that does not decarboxylate oxalo-acetate; and an NADPH-dependent form []. Other proteins known to be similar to malic enzymes are the Escherichia coli scfA protein; an enzyme from Zea mays (Maize), formerly thought to be cinnamyl-alcohol dehydrogenase []; and the hypothetical Saccharomyces cerevisiae protein YKL029c. Studies on the duck liver malic enzyme reveals that it can be alkylated by bromopyruvate, resulting in the loss of oxidative decarboxylation and the subsequent enhancement of pyruvate reductase activity []. The alkylated form is able to bind NADPH but not L-malate, indicating impaired substrate-or divalent metal ion-binding in the active site []. Sequence analysis has highlighted a cysteine residue as the point of alkylation, suggesting that it may play an important role in the activity of the enzyme [], although it is absent in the sequences from some species. There are three well conserved regions in the enzyme sequences. Two of them seem to be involved in the binding NAD or NADP. The significance of the third one, located in the central part of the enzymes, is not yet known.; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0055114 oxidation-reduction process; PDB: 2DVM_B 1WW8_A 3NV9_A 1PJ2_A 1PJL_B 1GZ3_A 1PJ4_A 1PJ3_C 1EFL_A 1EFK_B ....

>PF00390 malic: Malic enzyme, N-terminal domain; InterPro: IPR012301 Malic enzymes (malate oxidoreductases) catalyse the oxidative decarboxylation of malate to form pyruvate [], a reaction important in a number of metabolic pathways - e

Probab=100.00  E-value=3.8e-67  Score=522.89  Aligned_cols=172  Identities=65%  Similarity=1.192  Sum_probs=153.7

Q ss_pred             cccchhhccCCeEecchhhhHHHhhccccccCccceeeccCcccHHHHHhcCCCCCccEEEEecCceeeccCCCCCCCCC
Q psy14377        502 PGQEYVVELMPIVYTPTVGLACQKYGLIFRRPRGLFISIHDKGHISEVLRNWPETDIRAIVVTDGERILGLGDLGAYGMG  581 (848)
Q Consensus       502 ~~q~nn~e~lPvvYTPGVG~acl~~~~i~r~p~gm~L~~~d~g~i~eiL~Nwp~~d~~viVVTDG~rILGLGDlG~~gmg  581 (848)
                      +.+.|..++||++||||||++|+.++.+|+.|+|||++++|+|+++++|+|||.++|+++|||||||||||||+|++||+
T Consensus        11 ~l~~~~~e~lpivYTPtVg~ac~~~s~~~~~~~Gly~s~~d~g~i~~~l~n~~~~~v~v~VVTDG~rILGlGD~G~~Gm~   90 (182)
T PF00390_consen   11 LLSSHLEEMLPIVYTPTVGEACQNYSHLFRRPRGLYLSISDRGHIEEILRNWPERDVRVIVVTDGERILGLGDLGVNGMG   90 (182)
T ss_dssp             HHHHTHHHHHHHHSTTCHHHHHHHHHHHGGCHHSCCCEGGGETCHHHHHTTSS-SS--EEEEE-SSSBTTTBS-GGGGHH
T ss_pred             ehhhChHhhCceecCchHHHHHHHHHHhhccccceEEecCChHHHHHHHHhhhccCceEEEEeCchhhccccCcCcceEE
Confidence            78899999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             ccccceeeeeecCCCCCCceeeEEeeccCCcccccCCcccccccccCCCCcchhHHHHHHHHHHHHhhCCceeeeeecCC
Q psy14377        582 IPVGKLSLYTALAGIKPHQCLPITLDVGTNTQQLLDDPLYIGLRQRRTTGQAYDDFIEEFMQAVVARYGQHVLIQFEDFA  661 (848)
Q Consensus       582 IpvGKl~Ly~a~aGI~p~~~LPv~LDvGTnn~~ll~Dp~y~g~r~~R~~g~~y~~fvdefv~av~~~fGp~~~IqfEDf~  661 (848)
                      ||+||++|||+||||||++|||||||+|||||+||+||+|+|+||+|++|++|++|+||||+|++.+|||+++||||||+
T Consensus        91 I~~GKl~ly~~~gGI~P~~~lPv~LDvGTnn~~ll~Dp~Y~G~r~~R~~g~~y~~fvdefv~av~~~~gp~~~IqfEDf~  170 (182)
T PF00390_consen   91 IPIGKLALYTACGGIDPSRCLPVCLDVGTNNEELLNDPLYLGLRHPRVRGEEYDEFVDEFVEAVKRRFGPNALIQFEDFS  170 (182)
T ss_dssp             HHHHHHHHHHHHHS-EGGGEEEEEEESBBS-HHHHH-TT--S-SSB---THHHHHHHHHHHHHHHHHHGCTSEEEE-S--
T ss_pred             eeehhhhhHHhhcCcCcccccCeEeecCcchhhhccCcchhccccCCCChhhhhhCHHHHHHHHHHHhCCCeEEEEecCC
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CcchHHHHHHHc
Q psy14377        662 NHSAFRFLDTYR  673 (848)
Q Consensus       662 ~~naf~lL~ryr  673 (848)
                      ++|||++|+|||
T Consensus       171 ~~nAf~iL~kYr  182 (182)
T PF00390_consen  171 NPNAFRILDKYR  182 (182)
T ss_dssp             CCHHHHHHHHHT
T ss_pred             ChhHHHHHHhcC
Confidence            999999999997

g. carbon dioxide released from the reaction may be used in sugar production during the Calvin cycle of photosynthesis []. There are 3 forms of the enzyme []: an NAD-dependent form that decarboxylates oxaloacetate; an NAD-dependent form that does not decarboxylate oxalo-acetate; and an NADPH-dependent form []. Other proteins known to be similar to malic enzymes are the Escherichia coli scfA protein; an enzyme from Zea mays (Maize), formerly thought to be cinnamyl-alcohol dehydrogenase []; and the hypothetical Saccharomyces cerevisiae protein YKL029c. Studies on the duck liver malic enzyme reveals that it can be alkylated by bromopyruvate, resulting in the loss of oxidative decarboxylation and the subsequent enhancement of pyruvate reductase activity []. The alkylated form is able to bind NADPH but not L-malate, indicating impaired substrate-or divalent metal ion-binding in the active site []. Sequence analysis has highlighted a cysteine residue as the point of alkylation, suggesting that it may play an important role in the activity of the enzyme [], although it is absent in the sequences from some species. There are three well conserved regions in the enzyme sequences. Two of them seem to be involved in the binding NAD or NADP. The significance of the third one, located in the central part of the enzymes, is not yet known.; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0055114 oxidation-reduction process; PDB: 2DVM_B 1WW8_A 2HAE_B 1VL6_A 1PJ2_A 1PJL_B 1GZ3_A 1PJ4_A 1PJ3_C 1EFL_A ....

>KOG1257|consensus

Probab=100.00  E-value=1.2e-64  Score=559.82  Aligned_cols=235  Identities=50%  Similarity=0.756  Sum_probs=218.8

Q ss_pred             hhhhHHhhhcCCCCeE---EEchhhHHHHHHHHHHHHHhCCcCCCceEEEeccchHHHHHHHHHHHHHHhcCCChhhhcC
Q psy14377        199 PVKNLADVVKTVKPSI---LIGESCVNDVAGLLASLRITKTRLSDNTILFQGAGEASLGIADLCVMAMQKEGTSEQDARD  275 (848)
Q Consensus       199 ~ek~Lle~lr~~iPvF---qhGTA~V~~lAgll~Al~~tg~~l~d~riv~~GAGaAg~gia~ll~~~m~~~G~s~~eA~~  275 (848)
                      -..+|+++||..+++|   +||||.|+ ||||++|+|+||++|+|++|||+|||+||+|||+||+++|+++|+|++||++
T Consensus       267 nAfrlL~kYr~~~c~FNDDIQGTaaVa-lAgllaa~rit~~~lsd~~ilf~GAG~A~~GIA~l~v~~m~~~Gl~~eeA~k  345 (582)
T KOG1257|consen  267 NAFRLLEKYRNKYCMFNDDIQGTAAVA-LAGLLAALRITGKPLSDHVILFLGAGEAALGIANLIVMAMVKEGLSEEEARK  345 (582)
T ss_pred             hHHHHHHHhccccceecccccchhHHH-HHHHHHHHHHhCCccccceEEEecCchHHhhHHHHHHHHHHHcCCCHHHHhc
Confidence            4567899999999999   99999999 9999999999999999999999999999999999999999999999999999


Q ss_pred             cEEEEcCCCcccCCCCCCCCCccccccccccCCcchhhhhhhccccccHHHHhhhcccccCcccccchhHHHHHhhcccc
Q psy14377        276 KIWMVDSKGLIVKDRPEGGVTGHKVHYAKKHAPVKNLADVVKTGMAFSIEERQALGIHGLLPAAVKSQDEQLHLCKLNVD  355 (848)
Q Consensus       276 ~i~~vD~kGLi~~~r~~~~l~~~k~~~a~~~~~~~~l~~~~n~g~~~~~~er~~~~~~G~~p~~v~~~~~q~~~~~~~~~  355 (848)
                      ||||+|++|||+++|+. ++++++.+||+++++++                                             
T Consensus       346 kIwlvD~~GLi~~~r~~-~l~~~~~~fAk~~~~~~---------------------------------------------  379 (582)
T KOG1257|consen  346 KIWLVDSKGLITKGRKA-SLTEEKKPFAKDHEEIK---------------------------------------------  379 (582)
T ss_pred             cEEEEecCceeeccccC-CCChhhccccccChHHH---------------------------------------------
Confidence            99999999999999984 59999999999875433                                             


Q ss_pred             ccCCChhhHHHHHHhhcccceeEEEeccCceecccccCCCCCCCcccccccHHHHHcCCCcCccCceeeEEccccccccC
Q psy14377        356 RYEDPLNKYIYLQALAVKTDIRAIVVTDGERILGLGDLGAYGMGIPVGKLSLYTALAGIKPHQCLPITLDVGTNWRRAAA  435 (848)
Q Consensus       356 ~~~~~~~~~~~L~~l~~~~~~~~~~~~d~~~l~g~~~~g~~~~~~~~g~~~L~~al~g~kP~~~~~~~v~iG~~~~~~S~  435 (848)
                                                                        +|.+|++.+||      +++||+     |+
T Consensus       380 --------------------------------------------------~L~e~V~~vKP------tvLiG~-----S~  398 (582)
T KOG1257|consen  380 --------------------------------------------------DLEEAVKEVKP------TVLIGA-----SG  398 (582)
T ss_pred             --------------------------------------------------HHHHHHHhcCC------cEEEec-----cc
Confidence                                                              35567778899      466996     89


Q ss_pred             CCCCCCHHHHHHHHhcCCCceEEecCCCCCccCCCHHHHhccCCCcEEEEeCCCCCCcccCCeEEecccchhhccCCeEe
Q psy14377        436 IPQVFTADILKDMAAFNKRPIIFALSNPTSKAECTAEQAYVNTDGRGVFASGSPFDPVTYKGKTFTPGQEYVVELMPIVY  515 (848)
Q Consensus       436 ~~g~FTeevvk~Ma~~~~rPIIFaLSNPt~~~E~tpe~a~~~T~G~ai~AtGsPf~pv~y~g~~~~~~q~nn~e~lPvvY  515 (848)
                      +||+|||||+|+|+++|||||||||||||+++||||||||+||+||||||||||||||.|+||+|+|+|+||+|     .
T Consensus       399 ~~g~Fteevl~~Ma~~~erPiIFalSNPT~~aECtae~ay~~t~Gr~ifaSGSPF~pV~~~gK~~~pgQ~NN~y-----i  473 (582)
T KOG1257|consen  399 VGGAFTEEVLRAMAKSNERPIIFALSNPTSKAECTAEQAYKWTKGRAIFASGSPFPPVEYNGKVYVPGQGNNAY-----I  473 (582)
T ss_pred             CCccCCHHHHHHHHhcCCCceEEecCCCccccccCHHHHhhhcCCcEEEecCCCCCCceeCCcEecccCCceeE-----e
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999995     5


Q ss_pred             cchhhhHHHhhccccccCccceeeccCcccHHHHHhcC
Q psy14377        516 TPTVGLACQKYGLIFRRPRGLFISIHDKGHISEVLRNW  553 (848)
Q Consensus       516 TPGVG~acl~~~~i~r~p~gm~L~~~d~g~i~eiL~Nw  553 (848)
                      |||+|+++..++++ ++|++||+.      ..+.|+..
T Consensus       474 FPGi~Lg~vlsg~~-~i~D~mfl~------Aae~LA~~  504 (582)
T KOG1257|consen  474 FPGIGLGVVLSGAR-RIPDEMFLA------AAEALAEQ  504 (582)
T ss_pred             cchHHHHHHHcCCc-cCCHHHHHH------HHHHHHhh
Confidence            79999999999985 799999997      67788775

>cd00762 NAD_bind_malic_enz NAD(P) binding domain of malic enzyme

Probab=100.00  E-value=2.6e-63  Score=518.01  Aligned_cols=221  Identities=44%  Similarity=0.711  Sum_probs=200.0

Q ss_pred             EEchhhHHHHHHHHHHHHHhCCcCCCceEEEeccchHHHHHHHHHHHHHHhcCCChhhhcCcEEEEcCCCcccCCCCCCC
Q psy14377        215 LIGESCVNDVAGLLASLRITKTRLSDNTILFQGAGEASLGIADLCVMAMQKEGTSEQDARDKIWMVDSKGLIVKDRPEGG  294 (848)
Q Consensus       215 qhGTA~V~~lAgll~Al~~tg~~l~d~riv~~GAGaAg~gia~ll~~~m~~~G~s~~eA~~~i~~vD~kGLi~~~r~~~~  294 (848)
                      ||||++|+ ||||+||+|++|++|+||||||+|||+||+|||+||+.+|+++|+|+|||+++||++|++|||+++|++  
T Consensus         1 iqGTaaV~-lAgllnAlk~~g~~l~d~riv~~GAGsAg~gia~ll~~~~~~~Gls~e~A~~~i~~vD~~Gll~~~r~~--   77 (254)
T cd00762           1 IQGTASVA-VAGLLAALKVTKKKISEHKVLFNGAGAAALGIANLIVXLXVKEGISKEEACKRIWXVDRKGLLVKNRKE--   77 (254)
T ss_pred             CchhHHHH-HHHHHHHHHHhCCChhhcEEEEECcCHHHHHHHHHHHHHHHhcCCCHHHHhccEEEECCCCeEeCCCCc--
Confidence            79999999 999999999999999999999999999999999999999999999999999999999999999999975  


Q ss_pred             CCccccccccccCCcchhhhhhhccccccHHHHhhhcccccCcccccchhHHHHHhhccccccCCChhhHHHHHHhhccc
Q psy14377        295 VTGHKVHYAKKHAPVKNLADVVKTGMAFSIEERQALGIHGLLPAAVKSQDEQLHLCKLNVDRYEDPLNKYIYLQALAVKT  374 (848)
Q Consensus       295 l~~~k~~~a~~~~~~~~l~~~~n~g~~~~~~er~~~~~~G~~p~~v~~~~~q~~~~~~~~~~~~~~~~~~~~L~~l~~~~  374 (848)
                      ++++|.++++..++                 +                                                
T Consensus        78 l~~~~~~~~~~~~~-----------------~------------------------------------------------   92 (254)
T cd00762          78 TCPNEYHLARFANP-----------------E------------------------------------------------   92 (254)
T ss_pred             cCHHHHHHHHHcCc-----------------c------------------------------------------------
Confidence            67666663321100                 0                                                


Q ss_pred             ceeEEEeccCceecccccCCCCCCCcccccccHHHHHcCCCcCccCceeeEEccccccccCCCCCCCHHHHHHHHhcCCC
Q psy14377        375 DIRAIVVTDGERILGLGDLGAYGMGIPVGKLSLYTALAGIKPHQCLPITLDVGTNWRRAAAIPQVFTADILKDMAAFNKR  454 (848)
Q Consensus       375 ~~~~~~~~d~~~l~g~~~~g~~~~~~~~g~~~L~~al~g~kP~~~~~~~v~iG~~~~~~S~~~g~FTeevvk~Ma~~~~r  454 (848)
                               +.                  ..+|.++++.+||      |++||+     |++||+||||+||+|+++|+|
T Consensus        93 ---------~~------------------~~~L~eav~~~kp------tvlIG~-----S~~~g~ft~evv~~Ma~~~~~  134 (254)
T cd00762          93 ---------RE------------------SGDLEDAVEAAKP------DFLIGV-----SRVGGAFTPEVIRAXAEINER  134 (254)
T ss_pred             ---------cc------------------cCCHHHHHHhhCC------CEEEEe-----CCCCCCCCHHHHHHHhhcCCC
Confidence                     00                  0268889999999      788997     899999999999999999999


Q ss_pred             ceEEecCCCCCccCCCHHHHhccCCCcEEEEeCCCCCCcccCCeEEecccchhhccCCeEecchhhhHHHhhccccccCc
Q psy14377        455 PIIFALSNPTSKAECTAEQAYVNTDGRGVFASGSPFDPVTYKGKTFTPGQEYVVELMPIVYTPTVGLACQKYGLIFRRPR  534 (848)
Q Consensus       455 PIIFaLSNPt~~~E~tpe~a~~~T~G~ai~AtGsPf~pv~y~g~~~~~~q~nn~e~lPvvYTPGVG~acl~~~~i~r~p~  534 (848)
                      ||||||||||+++||||||||+||+||+||||||||+||+|+||+++|+|+||+     +.|||+|++++.+++. ++|+
T Consensus       135 PIIFaLSNPt~~aE~tpe~a~~~t~G~ai~AtGspf~pv~~~g~~~~~~Q~NN~-----~iFPGiglGal~~~a~-~itd  208 (254)
T cd00762         135 PVIFALSNPTSKAECTAEEAYTATEGRAIFASGSPFHPVELNGGTYKPGQGNNL-----YIFPGVALGVILCRIR-HITD  208 (254)
T ss_pred             CEEEECCCcCCccccCHHHHHhhcCCCEEEEECCCCCCcccCCceeecccccce-----eeccchhhhhHhhcCe-ECCH
Confidence            999999999999999999999999999999999999999999999999999999     5689999999999985 7999


Q ss_pred             cceeeccCcccHHHHHhcC
Q psy14377        535 GLFISIHDKGHISEVLRNW  553 (848)
Q Consensus       535 gm~L~~~d~g~i~eiL~Nw  553 (848)
                      +||++      ..+.|++.
T Consensus       209 ~m~~a------AA~aLA~~  221 (254)
T cd00762         209 DVFLS------AAEAIASS  221 (254)
T ss_pred             HHHHH------HHHHHHhh
Confidence            99997      77888876

Malic enzyme (ME), a member of the amino acid dehydrogenase (DH)-like domain family, catalyzes the oxidative decarboxylation of L-malate to pyruvate in the presence of cations (typically Mg++ or Mn++) with the concomitant reduction of cofactor NAD+ or NADP+. ME has been found in all organisms and plays important roles in diverse metabolic pathways such as photosynthesis and lipogenesis. This enzyme generally forms homotetramers. The conversion of malate to pyruvate by ME typically involves oxidation of malate to produce oxaloacetate, followed by decarboxylation of oxaloacetate to produce pyruvate and CO2. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glut

>cd05312 NAD_bind_1_malic_enz NAD(P) binding domain of malic enzyme (ME), subgroup 1

Probab=100.00  E-value=2.4e-63  Score=524.41  Aligned_cols=220  Identities=50%  Similarity=0.778  Sum_probs=204.0

Q ss_pred             EEchhhHHHHHHHHHHHHHhCCcCCCceEEEeccchHHHHHHHHHHHHHHhcCCChhhhcCcEEEEcCCCcccCCCCCCC
Q psy14377        215 LIGESCVNDVAGLLASLRITKTRLSDNTILFQGAGEASLGIADLCVMAMQKEGTSEQDARDKIWMVDSKGLIVKDRPEGG  294 (848)
Q Consensus       215 qhGTA~V~~lAgll~Al~~tg~~l~d~riv~~GAGaAg~gia~ll~~~m~~~G~s~~eA~~~i~~vD~kGLi~~~r~~~~  294 (848)
                      ||||++|+ ||||+||+|++|++|+||||||+|||+||+|||+||+.+|+++|+|+|||+++|||+|++|||+++|.+  
T Consensus         1 IqGTa~V~-lAgllnAlk~~g~~l~d~~iv~~GAGsAg~gia~ll~~~~~~~G~~~eeA~~~i~~vD~~Gll~~~r~~--   77 (279)
T cd05312           1 IQGTAAVA-LAGLLAALRITGKPLSDQRILFLGAGSAGIGIADLIVSAMVREGLSEEEARKKIWLVDSKGLLTKDRKD--   77 (279)
T ss_pred             CchHHHHH-HHHHHHHHHHhCCChhhcEEEEECcCHHHHHHHHHHHHHHHHcCCChhhccCeEEEEcCCCeEeCCCCc--
Confidence            69999999 999999999999999999999999999999999999999999999999999999999999999999975  


Q ss_pred             CCccccccccccCCcchhhhhhhccccccHHHHhhhcccccCcccccchhHHHHHhhccccccCCChhhHHHHHHhhccc
Q psy14377        295 VTGHKVHYAKKHAPVKNLADVVKTGMAFSIEERQALGIHGLLPAAVKSQDEQLHLCKLNVDRYEDPLNKYIYLQALAVKT  374 (848)
Q Consensus       295 l~~~k~~~a~~~~~~~~l~~~~n~g~~~~~~er~~~~~~G~~p~~v~~~~~q~~~~~~~~~~~~~~~~~~~~L~~l~~~~  374 (848)
                      ++++|.+|+++.++                         +                                        
T Consensus        78 l~~~~~~~a~~~~~-------------------------~----------------------------------------   92 (279)
T cd05312          78 LTPFKKPFARKDEE-------------------------K----------------------------------------   92 (279)
T ss_pred             chHHHHHHHhhcCc-------------------------c----------------------------------------
Confidence            88888888875321                         0                                        


Q ss_pred             ceeEEEeccCceecccccCCCCCCCcccccccHHHHHcCCCcCccCceeeEEccccccccCCCCCCCHHHHHHHHhcCCC
Q psy14377        375 DIRAIVVTDGERILGLGDLGAYGMGIPVGKLSLYTALAGIKPHQCLPITLDVGTNWRRAAAIPQVFTADILKDMAAFNKR  454 (848)
Q Consensus       375 ~~~~~~~~d~~~l~g~~~~g~~~~~~~~g~~~L~~al~g~kP~~~~~~~v~iG~~~~~~S~~~g~FTeevvk~Ma~~~~r  454 (848)
                                                  ...+|.++++.+||      |+|||+     |++||+||+|+||+|+++|+|
T Consensus        93 ----------------------------~~~~L~e~i~~v~p------tvlIG~-----S~~~g~ft~evv~~Ma~~~~~  133 (279)
T cd05312          93 ----------------------------EGKSLLEVVKAVKP------TVLIGL-----SGVGGAFTEEVVRAMAKSNER  133 (279)
T ss_pred             ----------------------------cCCCHHHHHHhcCC------CEEEEe-----CCCCCCCCHHHHHHHHhcCCC
Confidence                                        01268889999999      788997     889999999999999999999


Q ss_pred             ceEEecCCCCCccCCCHHHHhccCCCcEEEEeCCCCCCcccCCeEEecccchhhccCCeEecchhhhHHHhhccccccCc
Q psy14377        455 PIIFALSNPTSKAECTAEQAYVNTDGRGVFASGSPFDPVTYKGKTFTPGQEYVVELMPIVYTPTVGLACQKYGLIFRRPR  534 (848)
Q Consensus       455 PIIFaLSNPt~~~E~tpe~a~~~T~G~ai~AtGsPf~pv~y~g~~~~~~q~nn~e~lPvvYTPGVG~acl~~~~i~r~p~  534 (848)
                      ||||||||||+++||+|||||+||+|++||||||||+||+|+||+++|+|+||+     +.|||+|++++.+++. ++++
T Consensus       134 PIIFaLSNPt~~~E~~pe~a~~~t~G~ai~ATGsPf~pv~~~Gr~~~p~Q~NN~-----~iFPGiglGal~~~a~-~itd  207 (279)
T cd05312         134 PIIFALSNPTSKAECTAEDAYKWTDGRALFASGSPFPPVEYNGKTYVPGQGNNA-----YIFPGIGLGAILSGAR-HITD  207 (279)
T ss_pred             CEEEECCCcCCccccCHHHHHHhhcCCEEEEeCCCCCCeeeCCeEecCCCccee-----eeccchhhHHHHcCCe-eCCH
Confidence            999999999999999999999999999999999999999999999999999999     6689999999999985 7999


Q ss_pred             cceeeccCcccHHHHHhcC
Q psy14377        535 GLFISIHDKGHISEVLRNW  553 (848)
Q Consensus       535 gm~L~~~d~g~i~eiL~Nw  553 (848)
                      +|+++      ..+.|++.
T Consensus       208 ~m~~a------AA~aLA~~  220 (279)
T cd05312         208 EMFLA------AAEALASL  220 (279)
T ss_pred             HHHHH------HHHHHHHh
Confidence            99996      77888876

Malic enzyme (ME), a member of the amino acid dehydrogenase (DH)-like domain family, catalyzes the oxidative decarboxylation of L-malate to pyruvate in the presence of cations (typically Mg++ or Mn++) with the concomitant reduction of cofactor NAD+ or NADP+. ME has been found in all organisms, and plays important roles in diverse metabolic pathways such as photosynthesis and lipogenesis. This enzyme generally forms homotetramers. The conversion of malate to pyruvate by ME typically involves oxidation of malate to produce oxaloacetate, followed by decarboxylation of oxaloacetate to produce pyruvate and CO2. This subfamily consists of eukaryotic and bacterial ME. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH

>COG0281 SfcA Malic enzyme [Energy production and conversion]

Probab=100.00  E-value=1.5e-57  Score=497.09  Aligned_cols=237  Identities=35%  Similarity=0.531  Sum_probs=208.1

Q ss_pred             cccchhhccCCeEecchhhhHHHhhccccccCccceeeccCcccHHHHHhcCCCCCccEEEEecCceeeccCCCC-CCCC
Q psy14377        502 PGQEYVVELMPIVYTPTVGLACQKYGLIFRRPRGLFISIHDKGHISEVLRNWPETDIRAIVVTDGERILGLGDLG-AYGM  580 (848)
Q Consensus       502 ~~q~nn~e~lPvvYTPGVG~acl~~~~i~r~p~gm~L~~~d~g~i~eiL~Nwp~~d~~viVVTDG~rILGLGDlG-~~gm  580 (848)
                      ....++.++||++|||||+.+|+.++..++.++    +|.+|++             .++|||||+||||||||| .+||
T Consensus        38 ~~~~~~~~dl~l~YTPgVa~~~~~i~~d~~~~~----~yt~~~n-------------~vaVvTDgtaVLGLGniGp~ag~  100 (432)
T COG0281          38 TVPLHTQEDLPLAYTPGVAEACKAISEDPRKAY----SYTARGN-------------LVAVVTDGTAVLGLGNIGPLAGK  100 (432)
T ss_pred             cccccCHhhcCcccCCchHHHHHHHHhCcchhh----hcCCCCc-------------eEEEEECCceeecccccccccCc
Confidence            455789999999999999999999776544443    3444443             699999999999999999 6689


Q ss_pred             CccccceeeeeecCCCCCCceeeEEeeccCCcccccCCcccccccccCCCCcchhHHHHHHHHHHHHhhCCceeeeeecC
Q psy14377        581 GIPVGKLSLYTALAGIKPHQCLPITLDVGTNTQQLLDDPLYIGLRQRRTTGQAYDDFIEEFMQAVVARYGQHVLIQFEDF  660 (848)
Q Consensus       581 gIpvGKl~Ly~a~aGI~p~~~LPv~LDvGTnn~~ll~Dp~y~g~r~~R~~g~~y~~fvdefv~av~~~fGp~~~IqfEDf  660 (848)
                      +|++||++|||+|||||   +||||||+||||+                        +++||+++.++||.   |++||+
T Consensus       101 pVmeGKa~Lfk~faGid---~~pI~ld~~~~~e------------------------i~~~Vkal~p~Fgg---inLedi  150 (432)
T COG0281         101 PVMEGKAVLFKAFAGID---VLPIELDVGTNNE------------------------IIEFVKALEPTFGG---INLEDI  150 (432)
T ss_pred             chhhhHHHHHHHhcCCC---ceeeEeeCCChHH------------------------HHHHHHHhhhcCCC---cceeec
Confidence            99999999999999999   9999999999887                        68999999999977   777777


Q ss_pred             CCcchHHHHHHHcc--cCceeccCCchHHHHHHHHHHHHHhhhCCcCCCceEEecCcchhhHHHHHHHHHHHhccc--cc
Q psy14377        661 ANHSAFRFLDTYRN--RYCVFNDDIQGTASVAVAGLLASLRITKTRLSDNTILFQGAGEGTASVAVAGLLASLRIT--KT  736 (848)
Q Consensus       661 ~~~naf~lL~ryr~--~~~~FnDDiQGTaaV~LAgllaAlr~t~~~l~d~riv~~GAG~A~~g~giA~ll~~~~~~--~~  736 (848)
                      +.|.||.+++++|.  .||||||||||||+|+||||+||+|++|++|+|+||||+|||+|  |+|||+||+.+|++  +.
T Consensus       151 ~ap~cf~ie~~lr~~~~IPvFhDDqqGTaiv~lA~llnalk~~gk~l~d~kiv~~GAGAA--giaia~~l~~~g~~~~~i  228 (432)
T COG0281         151 DAPRCFAIEERLRYRMNIPVFHDDQQGTAIVTLAALLNALKLTGKKLKDQKIVINGAGAA--GIAIADLLVAAGVKEENI  228 (432)
T ss_pred             ccchhhHHHHHHhhcCCCCcccccccHHHHHHHHHHHHHHHHhCCCccceEEEEeCCcHH--HHHHHHHHHHhCCCcccE
Confidence            77777777666555  59999999999999999999999999999999999999999999  99999999999999  67


Q ss_pred             cccc-CceecCCCCCC-chHHHhh-hc-cccchhhccccCCCceEEeecCCCcch
Q psy14377        737 RLSD-NTILFQGAGEG-TASVAIA-GL-LASLRITKTRLSDNTILFQGSGEGTAS  787 (848)
Q Consensus       737 ~~~d-~g~i~~~r~~~-~~~~~~~-~~-~~~~r~~~~~~~~~~~~~~~s~~~~~~  787 (848)
                      .+|| +|++|++|+.. |++|.-. .. .++.|+.++++.++|||+|+|+.|+-.
T Consensus       229 ~~~D~~G~l~~~r~~~~~~~~k~~~a~~~~~~~~~~~~~~~adv~iG~S~~G~~t  283 (432)
T COG0281         229 FVVDRKGLLYDGREDLTMNQKKYAKAIEDTGERTLDLALAGADVLIGVSGVGAFT  283 (432)
T ss_pred             EEEecCCcccCCCcccccchHHHHHHHhhhccccccccccCCCEEEEcCCCCCcC
Confidence            7999 99999999985 8886555 44 777777677999999999999987643

>PRK12861 malic enzyme; Reviewed

Probab=100.00  E-value=1e-57  Score=532.23  Aligned_cols=235  Identities=24%  Similarity=0.455  Sum_probs=214.1

Q ss_pred             cchhhccCCeEecchhhhHHHhhccccccCccceeeccCcccHHHHHhcCCCCCccEEEEecCceeeccCCCCCCC-CCc
Q psy14377        504 QEYVVELMPIVYTPTVGLACQKYGLIFRRPRGLFISIHDKGHISEVLRNWPETDIRAIVVTDGERILGLGDLGAYG-MGI  582 (848)
Q Consensus       504 q~nn~e~lPvvYTPGVG~acl~~~~i~r~p~gm~L~~~d~g~i~eiL~Nwp~~d~~viVVTDG~rILGLGDlG~~g-mgI  582 (848)
                      ..+|.++|+++|||||+++|+.   ++++|+++| ++++||++             ++|||||+|||||||+|++| |+|
T Consensus        30 ~~~~~~dl~l~YtPgVa~~c~~---i~~~p~~~~-~~t~r~n~-------------v~VvtdG~~vLGLGdiG~~a~~pv   92 (764)
T PRK12861         30 PLVTQRDLALAYTPGVASACEE---IAADPLNAF-RFTSRGNL-------------VGVITNGTAVLGLGNIGALASKPV   92 (764)
T ss_pred             ccCChHHceeecCCchHHHHHH---HHhChHhhh-hhhccCcE-------------EEEEecchhhccCCCcCcccccch
Confidence            3677889999999999999999   889999984 57777764             99999999999999999998 888


Q ss_pred             cccceeeeeecCCCCCCceeeEEeeccCCcccccCCcccccccccCCCCcchhHHHHHHHHHHHHhhCCceeeeeecCCC
Q psy14377        583 PVGKLSLYTALAGIKPHQCLPITLDVGTNTQQLLDDPLYIGLRQRRTTGQAYDDFIEEFMQAVVARYGQHVLIQFEDFAN  662 (848)
Q Consensus       583 pvGKl~Ly~a~aGI~p~~~LPv~LDvGTnn~~ll~Dp~y~g~r~~R~~g~~y~~fvdefv~av~~~fGp~~~IqfEDf~~  662 (848)
                      ++||++|||+|||||       ++|+||||    +||               ++|| |||++++++||.   ||||||++
T Consensus        93 meGK~~L~~~~agid-------~~di~~~~----~dp---------------d~~v-~~v~a~~~~fg~---i~lED~~~  142 (764)
T PRK12861         93 MEGKAVLFKKFAGID-------VFDIEINE----TDP---------------DKLV-DIIAGLEPTFGG---INLEDIKA  142 (764)
T ss_pred             HHHHHHHHhhccCCC-------ccccccCC----CCH---------------HHHH-HHHHHHHhhcCC---ceeeeccC
Confidence            889999999999999       55666666    688               8998 999999999977   99999999


Q ss_pred             cchHHHHHHHcc--cCceeccCCchHHHHHHHHHHHHHhhhCCcCCCceEEecCcchhhHHHHHHHHHHHhccc--cccc
Q psy14377        663 HSAFRFLDTYRN--RYCVFNDDIQGTASVAVAGLLASLRITKTRLSDNTILFQGAGEGTASVAVAGLLASLRIT--KTRL  738 (848)
Q Consensus       663 ~naf~lL~ryr~--~~~~FnDDiQGTaaV~LAgllaAlr~t~~~l~d~riv~~GAG~A~~g~giA~ll~~~~~~--~~~~  738 (848)
                      ||||++|+|||+  +||||||||||||+|+||||+||+|++|++|+|+||||+|||+|  |+|||++|+..+++  +..+
T Consensus       143 p~~f~il~~~~~~~~ipvf~DD~qGTa~v~lA~llnal~~~gk~l~d~~iv~~GAGaA--g~~ia~~l~~~G~~~~~i~~  220 (764)
T PRK12861        143 PECFTVERKLRERMKIPVFHDDQHGTAITVSAAFINGLKVVGKSIKEVKVVTSGAGAA--ALACLDLLVDLGLPVENIWV  220 (764)
T ss_pred             chHHHHHHHHHhcCCCCeeccccchHHHHHHHHHHHHHHHhCCChhHcEEEEECHhHH--HHHHHHHHHHcCCChhhEEE
Confidence            999999999999  59999999999999999999999999999999999999999999  99999999999987  6678


Q ss_pred             cc-CceecCCCCCCchH-HHhhhccccchhhccccCCCceEEeecCCCcch
Q psy14377        739 SD-NTILFQGAGEGTAS-VAIAGLLASLRITKTRLSDNTILFQGSGEGTAS  787 (848)
Q Consensus       739 ~d-~g~i~~~r~~~~~~-~~~~~~~~~~r~~~~~~~~~~~~~~~s~~~~~~  787 (848)
                      +| +|+||++|+..++. +....-.|..++|+++++++|+|+|+|+.|+-+
T Consensus       221 ~D~~Gli~~~r~~~l~~~k~~~a~~~~~~~L~eai~~advliG~S~~g~ft  271 (764)
T PRK12861        221 TDIEGVVYRGRTTLMDPDKERFAQETDARTLAEVIGGADVFLGLSAGGVLK  271 (764)
T ss_pred             EcCCCeeeCCCcccCCHHHHHHHhhcCCCCHHHHHhcCCEEEEcCCCCCCC
Confidence            99 99999999987775 444566788899999999999999999877544

>COG0281 SfcA Malic enzyme [Energy production and conversion]

Probab=100.00  E-value=2.3e-56  Score=487.88  Aligned_cols=303  Identities=25%  Similarity=0.359  Sum_probs=246.6

Q ss_pred             hhccC-CccccccccCC--ccccccccCCc--CccCCcCccceeeec----ccChhhHHHHH----HhhccC--------
Q psy14377        101 ELKGL-SQRDFLSSWLN--RGPCLNCWGKR--DFEQDKQGISYSIHA----SLGIADLCVMA----MQKEGT--------  159 (848)
Q Consensus       101 ~vk~M-~~~piifA~sn--~~~~i~atG~~--~fdypnQ~Nnv~vfp----~Lgl~~m~~~A----~~ala~--------  159 (848)
                      -.+++ +++++.++|||  +.+|..++-++  .|+|++++|.|+|++    .|||+|+++.|    |++++.        
T Consensus        37 ~~~~~~~~~dl~l~YTPgVa~~~~~i~~d~~~~~~yt~~~n~vaVvTDgtaVLGLGniGp~ag~pVmeGKa~Lfk~faGi  116 (432)
T COG0281          37 PTVPLHTQEDLPLAYTPGVAEACKAISEDPRKAYSYTARGNLVAVVTDGTAVLGLGNIGPLAGKPVMEGKAVLFKAFAGI  116 (432)
T ss_pred             EcccccCHhhcCcccCCchHHHHHHHHhCcchhhhcCCCCceEEEEECCceeecccccccccCcchhhhHHHHHHHhcCC
Confidence            55666 89999999999  99999999888  889999999999999    89999999777    455542        


Q ss_pred             -------ChhhHhhhhhcccccccccCCCCCCCCccccccccccchhhhhHHhhhcCCCCeE---EEchhhHHHHHHHHH
Q psy14377        160 -------SEQDARDKIWMVDSKGLIVKDRPEGGVTGHKVHYAKKHAPVKNLADVVKTVKPSI---LIGESCVNDVAGLLA  229 (848)
Q Consensus       160 -------~v~d~~~~ay~~~~~G~lYPkppd~gIr~edIavAk~fe~ek~Lle~lr~~iPvF---qhGTA~V~~lAgll~  229 (848)
                             .+.+.+.   +++-.-.+-|  .|++|++++++.|+||+++.+|.++  .+||||   |||||+|+ +|||+|
T Consensus       117 d~~pI~ld~~~~~e---i~~~Vkal~p--~FgginLedi~ap~cf~ie~~lr~~--~~IPvFhDDqqGTaiv~-lA~lln  188 (432)
T COG0281         117 DVLPIELDVGTNNE---IIEFVKALEP--TFGGINLEDIDAPRCFAIEERLRYR--MNIPVFHDDQQGTAIVT-LAALLN  188 (432)
T ss_pred             CceeeEeeCCChHH---HHHHHHHhhh--cCCCcceeecccchhhHHHHHHhhc--CCCCcccccccHHHHHH-HHHHHH
Confidence                   1112222   2222444456  7779999999999999999988664  589999   99999999 999999


Q ss_pred             HHHHhCCcCCCceEEEeccchHHHHHHHHHHHHHHhcCCChhhhcCcEEEEcCCCcccCCCCCCCCCccccccccccCCc
Q psy14377        230 SLRITKTRLSDNTILFQGAGEASLGIADLCVMAMQKEGTSEQDARDKIWMVDSKGLIVKDRPEGGVTGHKVHYAKKHAPV  309 (848)
Q Consensus       230 Al~~tg~~l~d~riv~~GAGaAg~gia~ll~~~m~~~G~s~~eA~~~i~~vD~kGLi~~~r~~~~l~~~k~~~a~~~~~~  309 (848)
                      |+|++|++|+|+|||++|||+||+||+++|+.+    |++    .+||||||++|+++++|++..++.+|..++.+... 
T Consensus       189 alk~~gk~l~d~kiv~~GAGAAgiaia~~l~~~----g~~----~~~i~~~D~~G~l~~~r~~~~~~~~k~~~a~~~~~-  259 (432)
T COG0281         189 ALKLTGKKLKDQKIVINGAGAAGIAIADLLVAA----GVK----EENIFVVDRKGLLYDGREDLTMNQKKYAKAIEDTG-  259 (432)
T ss_pred             HHHHhCCCccceEEEEeCCcHHHHHHHHHHHHh----CCC----cccEEEEecCCcccCCCcccccchHHHHHHHhhhc-
Confidence            999999999999999999999999999999988    665    38999999999999999762233333322221100 


Q ss_pred             chhhhhhhccccccHHHHhhhcccccCcccccchhHHHHHhhccccccCCChhhHHHHHHhhcccceeEEEeccCceecc
Q psy14377        310 KNLADVVKTGMAFSIEERQALGIHGLLPAAVKSQDEQLHLCKLNVDRYEDPLNKYIYLQALAVKTDIRAIVVTDGERILG  389 (848)
Q Consensus       310 ~~l~~~~n~g~~~~~~er~~~~~~G~~p~~v~~~~~q~~~~~~~~~~~~~~~~~~~~L~~l~~~~~~~~~~~~d~~~l~g  389 (848)
                                                                    .|.                               
T Consensus       260 ----------------------------------------------~~~-------------------------------  262 (432)
T COG0281         260 ----------------------------------------------ERT-------------------------------  262 (432)
T ss_pred             ----------------------------------------------ccc-------------------------------
Confidence                                                          000                               


Q ss_pred             cccCCCCCCCcccccccHHHHHcCCCcCccCceeeEEccccccccCCCCCCCHHHHHHHHhcCCCceEEecCCCCCccCC
Q psy14377        390 LGDLGAYGMGIPVGKLSLYTALAGIKPHQCLPITLDVGTNWRRAAAIPQVFTADILKDMAAFNKRPIIFALSNPTSKAEC  469 (848)
Q Consensus       390 ~~~~g~~~~~~~~g~~~L~~al~g~kP~~~~~~~v~iG~~~~~~S~~~g~FTeevvk~Ma~~~~rPIIFaLSNPt~~~E~  469 (848)
                                    +   ..++.++        |||||+     |+. |+||+|+||+|++   +||||||||||  ||+
T Consensus       263 --------------~---~~~~~~a--------dv~iG~-----S~~-G~~t~e~V~~Ma~---~PiIfalaNP~--pEi  306 (432)
T COG0281         263 --------------L---DLALAGA--------DVLIGV-----SGV-GAFTEEMVKEMAK---HPIIFALANPT--PEI  306 (432)
T ss_pred             --------------c---cccccCC--------CEEEEc-----CCC-CCcCHHHHHHhcc---CCEEeecCCCC--ccC
Confidence                          0   0134444        899998     666 9999999999996   49999999999  999


Q ss_pred             CHHHHhccCCCcEEEEeCCCCCCcccCCeEEecccchhhccCCeEecchhhhHHHhhccccccCccceeeccCcccHHHH
Q psy14377        470 TAEQAYVNTDGRGVFASGSPFDPVTYKGKTFTPGQEYVVELMPIVYTPTVGLACQKYGLIFRRPRGLFISIHDKGHISEV  549 (848)
Q Consensus       470 tpe~a~~~T~G~ai~AtGsPf~pv~y~g~~~~~~q~nn~e~lPvvYTPGVG~acl~~~~i~r~p~gm~L~~~d~g~i~ei  549 (848)
                      +||+|.+|++|++|+||||||          +|+|+||+     +.|||++++++++++. +++++|+++      ..+.
T Consensus       307 ~Pe~a~~~~~~aaivaTGrsd----------~PnQvNNv-----L~FPgIfrGaLd~rA~-~ItdeM~~A------Aa~A  364 (432)
T COG0281         307 TPEDAKEWGDGAAIVATGRSD----------YPNQVNNV-----LIFPGIFRGALDVRAK-TITDEMKIA------AAEA  364 (432)
T ss_pred             CHHHHhhcCCCCEEEEeCCCC----------Ccccccce-----eEcchhhhhhHhhccc-cCCHHHHHH------HHHH
Confidence            999999999999999999974          36699999     6789999999999985 799999997      6778


Q ss_pred             HhcCCC
Q psy14377        550 LRNWPE  555 (848)
Q Consensus       550 L~Nwp~  555 (848)
                      +++...
T Consensus       365 iA~~~~  370 (432)
T COG0281         365 IADLAR  370 (432)
T ss_pred             HHhhcc
Confidence            887643

>PRK12862 malic enzyme; Reviewed

Probab=100.00  E-value=3e-56  Score=522.56  Aligned_cols=299  Identities=25%  Similarity=0.377  Sum_probs=258.3

Q ss_pred             ccC-CccccccccCC--ccccccccCCc--CccCCcCccceeeec----ccChhhHHHHH----HhhccC----------
Q psy14377        103 KGL-SQRDFLSSWLN--RGPCLNCWGKR--DFEQDKQGISYSIHA----SLGIADLCVMA----MQKEGT----------  159 (848)
Q Consensus       103 k~M-~~~piifA~sn--~~~~i~atG~~--~fdypnQ~Nnv~vfp----~Lgl~~m~~~A----~~ala~----------  159 (848)
                      +++ +++||+++|+|  +.+|..+.-+|  .|+||+++|.|+|++    +|||+|+++.|    |++++.          
T Consensus        33 ~~~~~~~dl~~~ytpgv~~~~~~i~~~~~~~~~~t~~~n~v~vvtdg~~vLGlGd~G~~~~~pv~egK~~l~~~~~gi~~  112 (763)
T PRK12862         33 KPLANQRDLALAYSPGVAAPCLEIAADPANAARYTSRGNLVAVVSNGTAVLGLGNIGPLASKPVMEGKAVLFKKFAGIDV  112 (763)
T ss_pred             CCCCCHHHceeeeCCchHHHHHHHHhChHhhhhcccCCcEEEEEechhhhccccccCcccccchHHHHHHHHHhhcCCCc
Confidence            344 89999999999  99998888888  899999999999999    89999999988    455541          


Q ss_pred             -Ch-hhHhhhhhcccccccccCCCCCCCCccccccccccchhhhhHHhhhcCCCCeE---EEchhhHHHHHHHHHHHHHh
Q psy14377        160 -SE-QDARDKIWMVDSKGLIVKDRPEGGVTGHKVHYAKKHAPVKNLADVVKTVKPSI---LIGESCVNDVAGLLASLRIT  234 (848)
Q Consensus       160 -~v-~d~~~~ay~~~~~G~lYPkppd~gIr~edIavAk~fe~ek~Lle~lr~~iPvF---qhGTA~V~~lAgll~Al~~t  234 (848)
                       ++ .+......+++..-.++|  .|++|++||++.|+||++++++.+.+  ++|+|   |||||+|+ +|||+||+|++
T Consensus       113 ~~i~~~~~d~d~~v~~v~~~~p--~f~~i~~ED~~~~~~f~i~~~~~~~~--~ip~f~DD~~GTa~v~-la~l~~a~~~~  187 (763)
T PRK12862        113 FDIELDESDPDKLVEIVAALEP--TFGGINLEDIKAPECFYIERELRERM--KIPVFHDDQHGTAIIV-AAALLNGLKLV  187 (763)
T ss_pred             cccccCCCCHHHHHHHHHHhCC--CcceeeeecccCchHHHHHHHHHhcC--CCceEecCcccHHHHH-HHHHHHHHHHh
Confidence             11 122223335666778888  77899999999999999999888764  69999   99999999 99999999999


Q ss_pred             CCcCCCceEEEeccchHHHHHHHHHHHHHHhcCCChhhhcCcEEEEcCCCcccCCCCCCCCCccccccccccCCcchhhh
Q psy14377        235 KTRLSDNTILFQGAGEASLGIADLCVMAMQKEGTSEQDARDKIWMVDSKGLIVKDRPEGGVTGHKVHYAKKHAPVKNLAD  314 (848)
Q Consensus       235 g~~l~d~riv~~GAGaAg~gia~ll~~~m~~~G~s~~eA~~~i~~vD~kGLi~~~r~~~~l~~~k~~~a~~~~~~~~l~~  314 (848)
                      |++|+|+||||+|||+||+|||++|+.+    |++    ++||||||++|||+++|++ .++++|.+|++.++.      
T Consensus       188 ~~~~~~~~iv~~GaGaag~~~a~~l~~~----G~~----~~~i~~~D~~G~i~~~r~~-~l~~~~~~~a~~~~~------  252 (763)
T PRK12862        188 GKDIEDVKLVASGAGAAALACLDLLVSL----GVK----RENIWVTDIKGVVYEGRTE-LMDPWKARYAQKTDA------  252 (763)
T ss_pred             CCChhhcEEEEEChhHHHHHHHHHHHHc----CCC----cccEEEEcCCCeeeCCCCc-cccHHHHHHhhhccc------
Confidence            9999999999999999999999999874    988    3899999999999999975 378888888775310      


Q ss_pred             hhhccccccHHHHhhhcccccCcccccchhHHHHHhhccccccCCChhhHHHHHHhhcccceeEEEeccCceecccccCC
Q psy14377        315 VVKTGMAFSIEERQALGIHGLLPAAVKSQDEQLHLCKLNVDRYEDPLNKYIYLQALAVKTDIRAIVVTDGERILGLGDLG  394 (848)
Q Consensus       315 ~~n~g~~~~~~er~~~~~~G~~p~~v~~~~~q~~~~~~~~~~~~~~~~~~~~L~~l~~~~~~~~~~~~d~~~l~g~~~~g  394 (848)
                                                                                                      
T Consensus       253 --------------------------------------------------------------------------------  252 (763)
T PRK12862        253 --------------------------------------------------------------------------------  252 (763)
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             CCCCCcccccccHHHHHcCCCcCccCceeeEEccccccccCCCCCCCHHHHHHHHhcCCCceEEecCCCCCccCCCHHHH
Q psy14377        395 AYGMGIPVGKLSLYTALAGIKPHQCLPITLDVGTNWRRAAAIPQVFTADILKDMAAFNKRPIIFALSNPTSKAECTAEQA  474 (848)
Q Consensus       395 ~~~~~~~~g~~~L~~al~g~kP~~~~~~~v~iG~~~~~~S~~~g~FTeevvk~Ma~~~~rPIIFaLSNPt~~~E~tpe~a  474 (848)
                                -+|.+++++  |      |||||+     |+ ||+||+|+||+|+   +|||||||||||  |||+||||
T Consensus       253 ----------~~l~e~~~~--~------~v~iG~-----s~-~g~~~~~~v~~M~---~~piifalsNP~--~E~~p~~a  303 (763)
T PRK12862        253 ----------RTLAEVIEG--A------DVFLGL-----SA-AGVLKPEMVKKMA---PRPLIFALANPT--PEILPEEA  303 (763)
T ss_pred             ----------CCHHHHHcC--C------CEEEEc-----CC-CCCCCHHHHHHhc---cCCEEEeCCCCc--ccCCHHHH
Confidence                      146778887  4      899997     66 9999999999999   899999999999  89999999


Q ss_pred             hccCCCcEEEEeCCCCCCcccCCeEEecccchhhccCCeEecchhhhHHHhhccccccCccceeeccCcccHHHHHhcC
Q psy14377        475 YVNTDGRGVFASGSPFDPVTYKGKTFTPGQEYVVELMPIVYTPTVGLACQKYGLIFRRPRGLFISIHDKGHISEVLRNW  553 (848)
Q Consensus       475 ~~~T~G~ai~AtGsPf~pv~y~g~~~~~~q~nn~e~lPvvYTPGVG~acl~~~~i~r~p~gm~L~~~d~g~i~eiL~Nw  553 (848)
                      |+||+| +|||||+          +++|||+||+     +.|||++++++.+++. +++++|+++      ..+.|++.
T Consensus       304 ~~~~~~-~i~atGr----------s~~p~Q~NN~-----~~FPgi~~g~l~~~a~-~i~~~m~~a------aa~ala~~  359 (763)
T PRK12862        304 RAVRPD-AIIATGR----------SDYPNQVNNV-----LCFPYIFRGALDVGAT-TINEEMKIA------AVRAIAEL  359 (763)
T ss_pred             HHhcCC-EEEEECC----------cCCCCcccce-----eeccchhhhHHhcCCe-eCCHHHHHH------HHHHHHhc
Confidence            999998 9999996          6789999999     6689999999999985 799999997      66778776

>PRK07232 bifunctional malic enzyme oxidoreductase/phosphotransacetylase; Reviewed

Probab=100.00  E-value=5e-56  Score=518.40  Aligned_cols=300  Identities=25%  Similarity=0.390  Sum_probs=259.4

Q ss_pred             ccC-CccccccccCC--ccccccccCCc--CccCCcCccceeeec----ccChhhHHHHH----HhhccC----------
Q psy14377        103 KGL-SQRDFLSSWLN--RGPCLNCWGKR--DFEQDKQGISYSIHA----SLGIADLCVMA----MQKEGT----------  159 (848)
Q Consensus       103 k~M-~~~piifA~sn--~~~~i~atG~~--~fdypnQ~Nnv~vfp----~Lgl~~m~~~A----~~ala~----------  159 (848)
                      +++ +++|++++|+|  +.+|..+.-+|  .|+||+++|.|+|++    +|||+|+++.|    |++++.          
T Consensus        25 ~~~~~~~dl~~~Ytpgv~~~c~~i~~~~~~~~~~t~~~n~v~vvtdg~~vLGlGd~G~~a~~pv~egK~~l~~~~~gid~  104 (752)
T PRK07232         25 KPLATQRDLSLAYSPGVAAPCLEIAKDPADAYKYTARGNLVAVISNGTAVLGLGNIGALASKPVMEGKGVLFKKFAGIDV  104 (752)
T ss_pred             cccCChhhcceecCCchHHHHHHHHhChhhccccccCCcEEEEEccchhhccccccccccCccHHHHHHHHHHhhcCCCc
Confidence            445 89999999999  99998888787  899999999999999    89999999997    455552          


Q ss_pred             -Ch-hhHhhhhhcccccccccCCCCCCCCccccccccccchhhhhHHhhhcCCCCeE---EEchhhHHHHHHHHHHHHHh
Q psy14377        160 -SE-QDARDKIWMVDSKGLIVKDRPEGGVTGHKVHYAKKHAPVKNLADVVKTVKPSI---LIGESCVNDVAGLLASLRIT  234 (848)
Q Consensus       160 -~v-~d~~~~ay~~~~~G~lYPkppd~gIr~edIavAk~fe~ek~Lle~lr~~iPvF---qhGTA~V~~lAgll~Al~~t  234 (848)
                       ++ .+......+++..-.++|  .|++|++||++.|+||++++++.+++  ++|+|   |||||+|+ +|||+||+|++
T Consensus       105 ~~i~~~~~d~de~v~~v~~~~p--~~g~i~~ED~~~p~~f~i~~~~~~~~--~ip~f~DD~~GTa~v~-lA~l~na~~~~  179 (752)
T PRK07232        105 FDIEVDEEDPDKFIEAVAALEP--TFGGINLEDIKAPECFYIEEKLRERM--DIPVFHDDQHGTAIIS-AAALLNALELV  179 (752)
T ss_pred             cccccCCCCHHHHHHHHHHhCC--CccEEeeeecCCchHHHHHHHHHHhc--CCCeeccccchHHHHH-HHHHHHHHHHh
Confidence             11 122233345666778888  88899999999999999999988875  79999   99999999 99999999999


Q ss_pred             CCcCCCceEEEeccchHHHHHHHHHHHHHHhcCCChhhhcCcEEEEcCCCcccCCCCCCCCCccccccccccCCcchhhh
Q psy14377        235 KTRLSDNTILFQGAGEASLGIADLCVMAMQKEGTSEQDARDKIWMVDSKGLIVKDRPEGGVTGHKVHYAKKHAPVKNLAD  314 (848)
Q Consensus       235 g~~l~d~riv~~GAGaAg~gia~ll~~~m~~~G~s~~eA~~~i~~vD~kGLi~~~r~~~~l~~~k~~~a~~~~~~~~l~~  314 (848)
                      |++|+|+||||+|||+||+|||+||+..    |++    ++||||||++|+|+++|++ +++++|.+|++.++.      
T Consensus       180 ~~~~~~~~iv~~GaGaag~~~a~~l~~~----G~~----~~~i~~~D~~G~i~~~r~~-~~~~~k~~~a~~~~~------  244 (752)
T PRK07232        180 GKKIEDVKIVVSGAGAAAIACLNLLVAL----GAK----KENIIVCDSKGVIYKGRTE-GMDEWKAAYAVDTDA------  244 (752)
T ss_pred             CCChhhcEEEEECccHHHHHHHHHHHHc----CCC----cccEEEEcCCCeecCCCcc-cccHHHHHHhccCCC------
Confidence            9999999999999999999999999874    988    7899999999999999964 488888888775310      


Q ss_pred             hhhccccccHHHHhhhcccccCcccccchhHHHHHhhccccccCCChhhHHHHHHhhcccceeEEEeccCceecccccCC
Q psy14377        315 VVKTGMAFSIEERQALGIHGLLPAAVKSQDEQLHLCKLNVDRYEDPLNKYIYLQALAVKTDIRAIVVTDGERILGLGDLG  394 (848)
Q Consensus       315 ~~n~g~~~~~~er~~~~~~G~~p~~v~~~~~q~~~~~~~~~~~~~~~~~~~~L~~l~~~~~~~~~~~~d~~~l~g~~~~g  394 (848)
                                                                                                      
T Consensus       245 --------------------------------------------------------------------------------  244 (752)
T PRK07232        245 --------------------------------------------------------------------------------  244 (752)
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             CCCCCcccccccHHHHHcCCCcCccCceeeEEccccccccCCCCCCCHHHHHHHHhcCCCceEEecCCCCCccCCCHHHH
Q psy14377        395 AYGMGIPVGKLSLYTALAGIKPHQCLPITLDVGTNWRRAAAIPQVFTADILKDMAAFNKRPIIFALSNPTSKAECTAEQA  474 (848)
Q Consensus       395 ~~~~~~~~g~~~L~~al~g~kP~~~~~~~v~iG~~~~~~S~~~g~FTeevvk~Ma~~~~rPIIFaLSNPt~~~E~tpe~a  474 (848)
                                .+|.+++++.        |||||+     |+ ||+||+|+||+|+   +|||||||||||  |||+||||
T Consensus       245 ----------~~l~~~i~~~--------~v~iG~-----s~-~g~~~~~~v~~M~---~~piifalsNP~--~E~~p~~a  295 (752)
T PRK07232        245 ----------RTLAEAIEGA--------DVFLGL-----SA-AGVLTPEMVKSMA---DNPIIFALANPD--PEITPEEA  295 (752)
T ss_pred             ----------CCHHHHHcCC--------CEEEEc-----CC-CCCCCHHHHHHhc---cCCEEEecCCCC--ccCCHHHH
Confidence                      1467788873        899997     66 9999999999999   699999999999  89999999


Q ss_pred             hccCCCcEEEEeCCCCCCcccCCeEEecccchhhccCCeEecchhhhHHHhhccccccCccceeeccCcccHHHHHhcCC
Q psy14377        475 YVNTDGRGVFASGSPFDPVTYKGKTFTPGQEYVVELMPIVYTPTVGLACQKYGLIFRRPRGLFISIHDKGHISEVLRNWP  554 (848)
Q Consensus       475 ~~~T~G~ai~AtGsPf~pv~y~g~~~~~~q~nn~e~lPvvYTPGVG~acl~~~~i~r~p~gm~L~~~d~g~i~eiL~Nwp  554 (848)
                      ++||+| +|||||+          +++|||+||+     +.|||++++++.+++. +++++|+++      ..+.|++.-
T Consensus       296 ~~~~~~-~i~atGr----------s~~pnQ~NN~-----~~FPgi~~g~l~~~a~-~i~~~m~~a------aa~ala~~~  352 (752)
T PRK07232        296 KAVRPD-AIIATGR----------SDYPNQVNNV-----LCFPYIFRGALDVGAT-TINEEMKLA------AVRAIAELA  352 (752)
T ss_pred             HHhcCC-EEEEECC----------cCCCCcccce-----eecchhhHHHHHcCCc-cCCHHHHHH------HHHHHHhhc
Confidence            999999 9999996          6779999999     6689999999999985 799999997      667787763

>PRK12861 malic enzyme; Reviewed

Probab=100.00  E-value=1.5e-55  Score=513.98  Aligned_cols=299  Identities=24%  Similarity=0.338  Sum_probs=252.1

Q ss_pred             ccC-CccccccccCC--ccccccccCCc--CccCCcCccceeeec----ccChhhHHHHH----HhhccC----------
Q psy14377        103 KGL-SQRDFLSSWLN--RGPCLNCWGKR--DFEQDKQGISYSIHA----SLGIADLCVMA----MQKEGT----------  159 (848)
Q Consensus       103 k~M-~~~piifA~sn--~~~~i~atG~~--~fdypnQ~Nnv~vfp----~Lgl~~m~~~A----~~ala~----------  159 (848)
                      +++ +++||+++|+|  +.+|..+.-+|  .|+|++++|.|+|++    +|||+|+++.|    |++++.          
T Consensus        29 ~~~~~~~dl~l~YtPgVa~~c~~i~~~p~~~~~~t~r~n~v~VvtdG~~vLGLGdiG~~a~~pvmeGK~~L~~~~agid~  108 (764)
T PRK12861         29 KPLVTQRDLALAYTPGVASACEEIAADPLNAFRFTSRGNLVGVITNGTAVLGLGNIGALASKPVMEGKAVLFKKFAGIDV  108 (764)
T ss_pred             cccCChHHceeecCCchHHHHHHHHhChHhhhhhhccCcEEEEEecchhhccCCCcCcccccchHHHHHHHHhhccCCCc
Confidence            444 89999999999  88998777777  899999999999999    89999999988    344441          


Q ss_pred             -Ch-hhHhhhhhcccccccccCCCCCCCCccccccccccchhhhhHHhhhcCCCCeE---EEchhhHHHHHHHHHHHHHh
Q psy14377        160 -SE-QDARDKIWMVDSKGLIVKDRPEGGVTGHKVHYAKKHAPVKNLADVVKTVKPSI---LIGESCVNDVAGLLASLRIT  234 (848)
Q Consensus       160 -~v-~d~~~~ay~~~~~G~lYPkppd~gIr~edIavAk~fe~ek~Lle~lr~~iPvF---qhGTA~V~~lAgll~Al~~t  234 (848)
                       ++ .+.....-+++-.-.+.|  .|++|++||++.|+||++++++.+++  ++|+|   |||||+|+ +|||+||+|++
T Consensus       109 ~di~~~~~dpd~~v~~v~a~~~--~fg~i~lED~~~p~~f~il~~~~~~~--~ipvf~DD~qGTa~v~-lA~llnal~~~  183 (764)
T PRK12861        109 FDIEINETDPDKLVDIIAGLEP--TFGGINLEDIKAPECFTVERKLRERM--KIPVFHDDQHGTAITV-SAAFINGLKVV  183 (764)
T ss_pred             cccccCCCCHHHHHHHHHHHHh--hcCCceeeeccCchHHHHHHHHHhcC--CCCeeccccchHHHHH-HHHHHHHHHHh
Confidence             11 111111123333445567  66789999999999999999887754  79999   99999999 99999999999


Q ss_pred             CCcCCCceEEEeccchHHHHHHHHHHHHHHhcCCChhhhcCcEEEEcCCCcccCCCCCCCCCccccccccccCCcchhhh
Q psy14377        235 KTRLSDNTILFQGAGEASLGIADLCVMAMQKEGTSEQDARDKIWMVDSKGLIVKDRPEGGVTGHKVHYAKKHAPVKNLAD  314 (848)
Q Consensus       235 g~~l~d~riv~~GAGaAg~gia~ll~~~m~~~G~s~~eA~~~i~~vD~kGLi~~~r~~~~l~~~k~~~a~~~~~~~~l~~  314 (848)
                      |++|+|+||||+|||+||+|||++++.    +|++++    ||||||++|||+++|++ .++++|.+|++.++.      
T Consensus       184 gk~l~d~~iv~~GAGaAg~~ia~~l~~----~G~~~~----~i~~~D~~Gli~~~r~~-~l~~~k~~~a~~~~~------  248 (764)
T PRK12861        184 GKSIKEVKVVTSGAGAAALACLDLLVD----LGLPVE----NIWVTDIEGVVYRGRTT-LMDPDKERFAQETDA------  248 (764)
T ss_pred             CCChhHcEEEEECHhHHHHHHHHHHHH----cCCChh----hEEEEcCCCeeeCCCcc-cCCHHHHHHHhhcCC------
Confidence            999999999999999999999999876    499844    99999999999999975 378888888765310      


Q ss_pred             hhhccccccHHHHhhhcccccCcccccchhHHHHHhhccccccCCChhhHHHHHHhhcccceeEEEeccCceecccccCC
Q psy14377        315 VVKTGMAFSIEERQALGIHGLLPAAVKSQDEQLHLCKLNVDRYEDPLNKYIYLQALAVKTDIRAIVVTDGERILGLGDLG  394 (848)
Q Consensus       315 ~~n~g~~~~~~er~~~~~~G~~p~~v~~~~~q~~~~~~~~~~~~~~~~~~~~L~~l~~~~~~~~~~~~d~~~l~g~~~~g  394 (848)
                                                                                                      
T Consensus       249 --------------------------------------------------------------------------------  248 (764)
T PRK12861        249 --------------------------------------------------------------------------------  248 (764)
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             CCCCCcccccccHHHHHcCCCcCccCceeeEEccccccccCCCCCCCHHHHHHHHhcCCCceEEecCCCCCccCCCHHHH
Q psy14377        395 AYGMGIPVGKLSLYTALAGIKPHQCLPITLDVGTNWRRAAAIPQVFTADILKDMAAFNKRPIIFALSNPTSKAECTAEQA  474 (848)
Q Consensus       395 ~~~~~~~~g~~~L~~al~g~kP~~~~~~~v~iG~~~~~~S~~~g~FTeevvk~Ma~~~~rPIIFaLSNPt~~~E~tpe~a  474 (848)
                                .+|.++++++        |||||+     |+ ||+||+|+||+|++   |||||||||||  |||+||||
T Consensus       249 ----------~~L~eai~~a--------dvliG~-----S~-~g~ft~e~v~~Ma~---~PIIFaLsNPt--pE~~pe~a  299 (764)
T PRK12861        249 ----------RTLAEVIGGA--------DVFLGL-----SA-GGVLKAEMLKAMAA---RPLILALANPT--PEIFPELA  299 (764)
T ss_pred             ----------CCHHHHHhcC--------CEEEEc-----CC-CCCCCHHHHHHhcc---CCEEEECCCCC--ccCCHHHH
Confidence                      1467788885        999997     65 99999999999994   99999999999  89999999


Q ss_pred             hccCCCcEEEEeCCCCCCcccCCeEEecccchhhccCCeEecchhhhHHHhhccccccCccceeeccCcccHHHHHhcC
Q psy14377        475 YVNTDGRGVFASGSPFDPVTYKGKTFTPGQEYVVELMPIVYTPTVGLACQKYGLIFRRPRGLFISIHDKGHISEVLRNW  553 (848)
Q Consensus       475 ~~~T~G~ai~AtGsPf~pv~y~g~~~~~~q~nn~e~lPvvYTPGVG~acl~~~~i~r~p~gm~L~~~d~g~i~eiL~Nw  553 (848)
                      ++ |+|++|||||+          +++|||+||+     +.|||++++++.+++. +++++|+++      ..+.|++.
T Consensus       300 ~~-~~g~aivaTGr----------s~~pnQ~NN~-----l~FPgi~~Gal~~~a~-~I~~~M~~a------Aa~alA~~  355 (764)
T PRK12861        300 HA-TRDDVVIATGR----------SDYPNQVNNV-----LCFPYIFRGALDVGAT-TITREMEIA------AVHAIAGL  355 (764)
T ss_pred             Hh-cCCCEEEEeCC----------cCCCCcccee-----eecchhhHHHHHcCCc-cCCHHHHHH------HHHHHHhh
Confidence            88 99999999987          5779999999     6689999999999985 799999997      66777775

>PRK07232 bifunctional malic enzyme oxidoreductase/phosphotransacetylase; Reviewed

Probab=100.00  E-value=2.1e-55  Score=513.16  Aligned_cols=235  Identities=26%  Similarity=0.463  Sum_probs=210.9

Q ss_pred             ccchhhccCCeEecchhhhHHHhhccccccCccceeeccCcccHHHHHhcCCCCCccEEEEecCceeeccCCCCCC-CCC
Q psy14377        503 GQEYVVELMPIVYTPTVGLACQKYGLIFRRPRGLFISIHDKGHISEVLRNWPETDIRAIVVTDGERILGLGDLGAY-GMG  581 (848)
Q Consensus       503 ~q~nn~e~lPvvYTPGVG~acl~~~~i~r~p~gm~L~~~d~g~i~eiL~Nwp~~d~~viVVTDG~rILGLGDlG~~-gmg  581 (848)
                      ...++.++|+++|||||+++|+.   ++++|+++| ++++||++             ++|||||+|||||||+|++ ||+
T Consensus        25 ~~~~~~~dl~~~Ytpgv~~~c~~---i~~~~~~~~-~~t~~~n~-------------v~vvtdg~~vLGlGd~G~~a~~p   87 (752)
T PRK07232         25 KPLATQRDLSLAYSPGVAAPCLE---IAKDPADAY-KYTARGNL-------------VAVISNGTAVLGLGNIGALASKP   87 (752)
T ss_pred             cccCChhhcceecCCchHHHHHH---HHhChhhcc-ccccCCcE-------------EEEEccchhhccccccccccCcc
Confidence            34678899999999999999996   889999999 78888874             9999999999999999999 788


Q ss_pred             ccccceeeeeecCCCCCCceeeEEeeccCCcccccCCcccccccccCCCCcchhHHHHHHHHHHHHhhCCce-eeeeecC
Q psy14377        582 IPVGKLSLYTALAGIKPHQCLPITLDVGTNTQQLLDDPLYIGLRQRRTTGQAYDDFIEEFMQAVVARYGQHV-LIQFEDF  660 (848)
Q Consensus       582 IpvGKl~Ly~a~aGI~p~~~LPv~LDvGTnn~~ll~Dp~y~g~r~~R~~g~~y~~fvdefv~av~~~fGp~~-~IqfEDf  660 (848)
                      |++||++|||+|||||   ++    |+||||+    |                   +||||++++..| |+. .||||||
T Consensus        88 v~egK~~l~~~~~gid---~~----~i~~~~~----d-------------------~de~v~~v~~~~-p~~g~i~~ED~  136 (752)
T PRK07232         88 VMEGKGVLFKKFAGID---VF----DIEVDEE----D-------------------PDKFIEAVAALE-PTFGGINLEDI  136 (752)
T ss_pred             HHHHHHHHHHhhcCCC---cc----ccccCCC----C-------------------HHHHHHHHHHhC-CCccEEeeeec
Confidence            8889999999999999   55    5555565    4                   478888888777 554 7999999


Q ss_pred             CCcchHHHHHHHccc--CceeccCCchHHHHHHHHHHHHHhhhCCcCCCceEEecCcchhhHHHHHHHHHHHhccc--cc
Q psy14377        661 ANHSAFRFLDTYRNR--YCVFNDDIQGTASVAVAGLLASLRITKTRLSDNTILFQGAGEGTASVAVAGLLASLRIT--KT  736 (848)
Q Consensus       661 ~~~naf~lL~ryr~~--~~~FnDDiQGTaaV~LAgllaAlr~t~~~l~d~riv~~GAG~A~~g~giA~ll~~~~~~--~~  736 (848)
                      ++||||++|+|||++  ||||||||||||+|+||||+||+|++|++|+|+||||+|||+|  |+|||+||+..+++  +.
T Consensus       137 ~~p~~f~i~~~~~~~~~ip~f~DD~~GTa~v~lA~l~na~~~~~~~~~~~~iv~~GaGaa--g~~~a~~l~~~G~~~~~i  214 (752)
T PRK07232        137 KAPECFYIEEKLRERMDIPVFHDDQHGTAIISAAALLNALELVGKKIEDVKIVVSGAGAA--AIACLNLLVALGAKKENI  214 (752)
T ss_pred             CCchHHHHHHHHHHhcCCCeeccccchHHHHHHHHHHHHHHHhCCChhhcEEEEECccHH--HHHHHHHHHHcCCCcccE
Confidence            999999999999997  7999999999999999999999999999999999999999999  99999999999985  66


Q ss_pred             cccc-CceecCCCCCCchHHH-hhhccccchhhccccCCCceEEeecCCCcch
Q psy14377        737 RLSD-NTILFQGAGEGTASVA-IAGLLASLRITKTRLSDNTILFQGSGEGTAS  787 (848)
Q Consensus       737 ~~~d-~g~i~~~r~~~~~~~~-~~~~~~~~r~~~~~~~~~~~~~~~s~~~~~~  787 (848)
                      .++| +|+|+++|+++++.+. ...-.|..++|+++++++|+|+|+|+.|+-+
T Consensus       215 ~~~D~~G~i~~~r~~~~~~~k~~~a~~~~~~~l~~~i~~~~v~iG~s~~g~~~  267 (752)
T PRK07232        215 IVCDSKGVIYKGRTEGMDEWKAAYAVDTDARTLAEAIEGADVFLGLSAAGVLT  267 (752)
T ss_pred             EEEcCCCeecCCCcccccHHHHHHhccCCCCCHHHHHcCCCEEEEcCCCCCCC
Confidence            7899 9999999988887644 4466688899999999999999999977544

>PRK12862 malic enzyme; Reviewed

Probab=100.00  E-value=2.1e-55  Score=515.37  Aligned_cols=235  Identities=26%  Similarity=0.438  Sum_probs=204.2

Q ss_pred             cchhhccCCeEecchhhhHHHhhccccccCccceeeccCcccHHHHHhcCCCCCccEEEEecCceeeccCCCCCCC-CCc
Q psy14377        504 QEYVVELMPIVYTPTVGLACQKYGLIFRRPRGLFISIHDKGHISEVLRNWPETDIRAIVVTDGERILGLGDLGAYG-MGI  582 (848)
Q Consensus       504 q~nn~e~lPvvYTPGVG~acl~~~~i~r~p~gm~L~~~d~g~i~eiL~Nwp~~d~~viVVTDG~rILGLGDlG~~g-mgI  582 (848)
                      ..++..+|+++|||||++.|+.   |.++|+..| .+++|++             .++|||||||||||||+|++| |+|
T Consensus        34 ~~~~~~dl~~~ytpgv~~~~~~---i~~~~~~~~-~~t~~~n-------------~v~vvtdg~~vLGlGd~G~~~~~pv   96 (763)
T PRK12862         34 PLANQRDLALAYSPGVAAPCLE---IAADPANAA-RYTSRGN-------------LVAVVSNGTAVLGLGNIGPLASKPV   96 (763)
T ss_pred             CCCCHHHceeeeCCchHHHHHH---HHhChHhhh-hcccCCc-------------EEEEEechhhhccccccCcccccch
Confidence            3567889999999999999999   888898877 4555554             499999999999999999997 999


Q ss_pred             cccceeeeeecCCCCCCceeeEEeeccCCcccccCCcccccccccCCCCcchhHHHHHHHHHHHHhhCCceeeeeecCCC
Q psy14377        583 PVGKLSLYTALAGIKPHQCLPITLDVGTNTQQLLDDPLYIGLRQRRTTGQAYDDFIEEFMQAVVARYGQHVLIQFEDFAN  662 (848)
Q Consensus       583 pvGKl~Ly~a~aGI~p~~~LPv~LDvGTnn~~ll~Dp~y~g~r~~R~~g~~y~~fvdefv~av~~~fGp~~~IqfEDf~~  662 (848)
                      ++||++|||+|||||   ++|    +||||+    ||               ++|| ++|+++.++||   .||||||++
T Consensus        97 ~egK~~l~~~~~gi~---~~~----i~~~~~----d~---------------d~~v-~~v~~~~p~f~---~i~~ED~~~  146 (763)
T PRK12862         97 MEGKAVLFKKFAGID---VFD----IELDES----DP---------------DKLV-EIVAALEPTFG---GINLEDIKA  146 (763)
T ss_pred             HHHHHHHHHhhcCCC---ccc----cccCCC----CH---------------HHHH-HHHHHhCCCcc---eeeeecccC
Confidence            999999999999999   555    555565    77               4443 44444445554   599999999


Q ss_pred             cchHHHHHHHccc--CceeccCCchHHHHHHHHHHHHHhhhCCcCCCceEEecCcchhhHHHHHHHHHHHhccc--cccc
Q psy14377        663 HSAFRFLDTYRNR--YCVFNDDIQGTASVAVAGLLASLRITKTRLSDNTILFQGAGEGTASVAVAGLLASLRIT--KTRL  738 (848)
Q Consensus       663 ~naf~lL~ryr~~--~~~FnDDiQGTaaV~LAgllaAlr~t~~~l~d~riv~~GAG~A~~g~giA~ll~~~~~~--~~~~  738 (848)
                      ||||++|+|||++  ||||||||||||+|+||||+||+|++|++|+|+||||+|||+|  |+|||+||+..+++  +..+
T Consensus       147 ~~~f~i~~~~~~~~~ip~f~DD~~GTa~v~la~l~~a~~~~~~~~~~~~iv~~GaGaa--g~~~a~~l~~~G~~~~~i~~  224 (763)
T PRK12862        147 PECFYIERELRERMKIPVFHDDQHGTAIIVAAALLNGLKLVGKDIEDVKLVASGAGAA--ALACLDLLVSLGVKRENIWV  224 (763)
T ss_pred             chHHHHHHHHHhcCCCceEecCcccHHHHHHHHHHHHHHHhCCChhhcEEEEEChhHH--HHHHHHHHHHcCCCcccEEE
Confidence            9999999999998  8999999999999999999999999999999999999999999  99999999999986  6778


Q ss_pred             cc-CceecCCCCCCchH-HHhhhccccchhhccccCCCceEEeecCCCcch
Q psy14377        739 SD-NTILFQGAGEGTAS-VAIAGLLASLRITKTRLSDNTILFQGSGEGTAS  787 (848)
Q Consensus       739 ~d-~g~i~~~r~~~~~~-~~~~~~~~~~r~~~~~~~~~~~~~~~s~~~~~~  787 (848)
                      +| +|+|+++|+.+++. +...+-.+..++|+++++++|+|+|+|+.|+-+
T Consensus       225 ~D~~G~i~~~r~~~l~~~~~~~a~~~~~~~l~e~~~~~~v~iG~s~~g~~~  275 (763)
T PRK12862        225 TDIKGVVYEGRTELMDPWKARYAQKTDARTLAEVIEGADVFLGLSAAGVLK  275 (763)
T ss_pred             EcCCCeeeCCCCccccHHHHHHhhhcccCCHHHHHcCCCEEEEcCCCCCCC
Confidence            99 99999999987765 334566678899999999999999999977543

>cd05312 NAD_bind_1_malic_enz NAD(P) binding domain of malic enzyme (ME), subgroup 1

Probab=100.00  E-value=4.3e-42  Score=363.21  Aligned_cols=196  Identities=38%  Similarity=0.526  Sum_probs=172.8

Q ss_pred             CcccccccCCCCCCceEEEeccchhHHHHHHHHHHHHHhcCCCccccCCeEEEEcCCCccccCCCCCCCChhhhhhcccC
Q psy14377          1 LLASLRITKTRLSDNTILFQGAGEASLGIADLCVMAMQKEGTSEQDARDKIWMVDSKGLIVKDRPEGGVTGHKVHYAKKH   80 (848)
Q Consensus         1 llnal~i~gK~i~d~kiV~~GAGaA~ia~a~L~~~am~~~G~~~e~~~~ni~m~DskGvi~~~R~d~~l~~~k~~~a~~~   80 (848)
                      |+||||++||+++|+||||+|||+||++||+||+.+|++.|++.|||++|||||||+|+|+++|++  |+++|++||+++
T Consensus        12 llnAlk~~g~~l~d~~iv~~GAGsAg~gia~ll~~~~~~~G~~~eeA~~~i~~vD~~Gll~~~r~~--l~~~~~~~a~~~   89 (279)
T cd05312          12 LLAALRITGKPLSDQRILFLGAGSAGIGIADLIVSAMVREGLSEEEARKKIWLVDSKGLLTKDRKD--LTPFKKPFARKD   89 (279)
T ss_pred             HHHHHHHhCCChhhcEEEEECcCHHHHHHHHHHHHHHHHcCCChhhccCeEEEEcCCCeEeCCCCc--chHHHHHHHhhc
Confidence            589999999999999999999999999999999999999999999999999999999999999998  999999999887


Q ss_pred             C--CCCCHHHHhcccCCCchhh-----------hhccCC---ccccccccCC----------------ccccccccCCc-
Q psy14377         81 A--PVKNLADVVKTVKPSILIE-----------ELKGLS---QRDFLSSWLN----------------RGPCLNCWGKR-  127 (848)
Q Consensus        81 ~--~~~tL~ea~~~s~~~v~~g-----------~vk~M~---~~piifA~sn----------------~~~~i~atG~~-  127 (848)
                      +  ...+|+|+|+..|||+|+|           +||.|+   +|||||+|||                .++||++||+| 
T Consensus        90 ~~~~~~~L~e~i~~v~ptvlIG~S~~~g~ft~evv~~Ma~~~~~PIIFaLSNPt~~~E~~pe~a~~~t~G~ai~ATGsPf  169 (279)
T cd05312          90 EEKEGKSLLEVVKAVKPTVLIGLSGVGGAFTEEVVRAMAKSNERPIIFALSNPTSKAECTAEDAYKWTDGRALFASGSPF  169 (279)
T ss_pred             CcccCCCHHHHHHhcCCCEEEEeCCCCCCCCHHHHHHHHhcCCCCEEEECCCcCCccccCHHHHHHhhcCCEEEEeCCCC
Confidence            5  5579999999888999998           999996   9999999999                48999999964 


Q ss_pred             -------CccCCcCccceeeecccCh-----------hhHHHHHHhhccCChhhHhhhhhcccccccccCCCCCCCCccc
Q psy14377        128 -------DFEQDKQGISYSIHASLGI-----------ADLCVMAMQKEGTSEQDARDKIWMVDSKGLIVKDRPEGGVTGH  189 (848)
Q Consensus       128 -------~fdypnQ~Nnv~vfp~Lgl-----------~~m~~~A~~ala~~v~d~~~~ay~~~~~G~lYPkppd~gIr~e  189 (848)
                             --+||||+||+|+||+||+           ++|+.+|+++||..+++++.      ..+.+||+..  .++.+
T Consensus       170 ~pv~~~Gr~~~p~Q~NN~~iFPGiglGal~~~a~~itd~m~~aAA~aLA~~~~~~~l------~~~~l~P~~~--~~r~v  241 (279)
T cd05312         170 PPVEYNGKTYVPGQGNNAYIFPGIGLGAILSGARHITDEMFLAAAEALASLVTDEEL------ARGRLYPPLS--NIREI  241 (279)
T ss_pred             CCeeeCCeEecCCCcceeeeccchhhHHHHcCCeeCCHHHHHHHHHHHHHhCCcccc------CCCeeeCCCc--cHhHH
Confidence                   0158999999999997765           99999999999998877765      6799999444  56666


Q ss_pred             cccccc---cchhhhhHHhh
Q psy14377        190 KVHYAK---KHAPVKNLADV  206 (848)
Q Consensus       190 dIavAk---~fe~ek~Lle~  206 (848)
                      +..+|.   .+++++++.+.
T Consensus       242 s~~VA~aVa~~A~~~gla~~  261 (279)
T cd05312         242 SAQIAVAVAKYAYEEGLATR  261 (279)
T ss_pred             HHHHHHHHHHHHHHcCCCCC
Confidence            666655   45566666654

Malic enzyme (ME), a member of the amino acid dehydrogenase (DH)-like domain family, catalyzes the oxidative decarboxylation of L-malate to pyruvate in the presence of cations (typically Mg++ or Mn++) with the concomitant reduction of cofactor NAD+ or NADP+. ME has been found in all organisms, and plays important roles in diverse metabolic pathways such as photosynthesis and lipogenesis. This enzyme generally forms homotetramers. The conversion of malate to pyruvate by ME typically involves oxidation of malate to produce oxaloacetate, followed by decarboxylation of oxaloacetate to produce pyruvate and CO2. This subfamily consists of eukaryotic and bacterial ME. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH

>PF03949 Malic_M: Malic enzyme, NAD binding domain; InterPro: IPR012302 Malic enzymes (malate oxidoreductases) catalyse the oxidative decarboxylation of malate to form pyruvate [], a reaction important in a number of metabolic pathways - e

Probab=100.00  E-value=8.7e-43  Score=364.53  Aligned_cols=184  Identities=33%  Similarity=0.531  Sum_probs=155.7

Q ss_pred             CcccccccCCCCCCceEEEeccchhHHHHHHHHHHHHHhcCCCccccCCeEEEEcCCCccccCCCCCCCChhhhhhcccC
Q psy14377          1 LLASLRITKTRLSDNTILFQGAGEASLGIADLCVMAMQKEGTSEQDARDKIWMVDSKGLIVKDRPEGGVTGHKVHYAKKH   80 (848)
Q Consensus         1 llnal~i~gK~i~d~kiV~~GAGaA~ia~a~L~~~am~~~G~~~e~~~~ni~m~DskGvi~~~R~d~~l~~~k~~~a~~~   80 (848)
                      |+|||+++||+++|+||||+|||+||++||+||+.+|.+.|+++|||++|||||||+|+|+++|++  |+++|++||+++
T Consensus        12 ll~Al~~~g~~l~d~riv~~GAGsAg~gia~ll~~~~~~~G~~~~eA~~~i~lvD~~Gll~~~r~~--l~~~~~~~a~~~   89 (255)
T PF03949_consen   12 LLNALRVTGKKLSDQRIVFFGAGSAGIGIARLLVAAMVREGLSEEEARKRIWLVDSKGLLTDDRED--LNPHKKPFARKT   89 (255)
T ss_dssp             HHHHHHHHTS-GGG-EEEEEB-SHHHHHHHHHHHHHHHCTTS-HHHHHTTEEEEETTEEEBTTTSS--HSHHHHHHHBSS
T ss_pred             HHHHHHHhCCCHHHcEEEEeCCChhHHHHHHHHHHHHHHhcCCHHHHhccEEEEeccceEeccCcc--CChhhhhhhccC
Confidence            589999999999999999999999999999999999999999999999999999999999999987  999999999988


Q ss_pred             CCCC---CHHHHhcccCCCchhh-----------hhccCC---ccccccccCC----------------ccccccccCCc
Q psy14377         81 APVK---NLADVVKTVKPSILIE-----------ELKGLS---QRDFLSSWLN----------------RGPCLNCWGKR  127 (848)
Q Consensus        81 ~~~~---tL~ea~~~s~~~v~~g-----------~vk~M~---~~piifA~sn----------------~~~~i~atG~~  127 (848)
                      ++..   +|+||+++.|||+|+|           +|+.|+   +|||||+|||                ++.||+|||+|
T Consensus        90 ~~~~~~~~L~eav~~~kPtvLIG~S~~~g~ft~evv~~Ma~~~erPIIF~LSNPt~~aE~~peda~~~t~g~ai~AtGSp  169 (255)
T PF03949_consen   90 NPEKDWGSLLEAVKGAKPTVLIGLSGQGGAFTEEVVRAMAKHNERPIIFPLSNPTPKAECTPEDAYEWTDGRAIFATGSP  169 (255)
T ss_dssp             STTT--SSHHHHHHCH--SEEEECSSSTTSS-HHHHHHCHHHSSSEEEEE-SSSCGGSSS-HHHHHHTTTSEEEEEESS-
T ss_pred             cccccccCHHHHHHhcCCCEEEEecCCCCcCCHHHHHHHhccCCCCEEEECCCCCCcccCCHHHHHhhCCceEEEecCCc
Confidence            7544   9999999999999999           999994   5999999999                78899999944


Q ss_pred             Cc---------cCCcCccceeeecccCh-----------hhHHHHHHhhccCChhhHhhhhhcccccccccCCCCCCCCc
Q psy14377        128 DF---------EQDKQGISYSIHASLGI-----------ADLCVMAMQKEGTSEQDARDKIWMVDSKGLIVKDRPEGGVT  187 (848)
Q Consensus       128 ~f---------dypnQ~Nnv~vfp~Lgl-----------~~m~~~A~~ala~~v~d~~~~ay~~~~~G~lYPkppd~gIr  187 (848)
                       |         +||||+||+|+||+||+           ++|+++|+++||..+++++.      ..|.+||.++  .++
T Consensus       170 -f~pv~~~Gr~~~p~Q~NN~~iFPGiglG~l~~~a~~Itd~M~~aAA~aLA~~v~~~~~------~~~~l~P~~~--~ir  240 (255)
T PF03949_consen  170 -FPPVEYNGRSDYPNQCNNSYIFPGIGLGALDSRARRITDEMFLAAAEALADLVSEEEL------APGRLYPPLF--DIR  240 (255)
T ss_dssp             ----EEETSCEESSCE-SGGGTHHHHHHHHHHCTBSS--HHHHHHHHHHHHHTSSHHHH------HTTBSS-SGG--GHH
T ss_pred             -cCCeeeCCeEEecCCCCeeEeeccceeeeeecCCeecCHHHHHHHHHHHHHhCCcccC------CCCcccCCCC--cHh
Confidence             2         58999999999997655           99999999999999988877      6799999444  566


Q ss_pred             cccccccc
Q psy14377        188 GHKVHYAK  195 (848)
Q Consensus       188 ~edIavAk  195 (848)
                      .++..+|.
T Consensus       241 ~vs~~VA~  248 (255)
T PF03949_consen  241 EVSARVAA  248 (255)
T ss_dssp             HHHHHHHH
T ss_pred             HHHHHHHH
Confidence            55554443

g. carbon dioxide released from the reaction may be used in sugar production during the Calvin cycle of photosynthesis []. There are 3 forms of the enzyme []: an NAD-dependent form that decarboxylates oxaloacetate; an NAD-dependent form that does not decarboxylate oxalo-acetate; and an NADPH-dependent form []. Other proteins known to be similar to malic enzymes are the Escherichia coli scfA protein; an enzyme from Zea mays (Maize), formerly thought to be cinnamyl-alcohol dehydrogenase []; and the hypothetical Saccharomyces cerevisiae protein YKL029c. Studies on the duck liver malic enzyme reveals that it can be alkylated by bromopyruvate, resulting in the loss of oxidative decarboxylation and the subsequent enhancement of pyruvate reductase activity []. The alkylated form is able to bind NADPH but not L-malate, indicating impaired substrate-or divalent metal ion-binding in the active site []. Sequence analysis has highlighted a cysteine residue as the point of alkylation, suggesting that it may play an important role in the activity of the enzyme [], although it is absent in the sequences from some species. There are three well conserved regions in the enzyme sequences. Two of them seem to be involved in the binding NAD or NADP. The significance of the third one, located in the central part of the enzymes, is not yet known.; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0055114 oxidation-reduction process; PDB: 2DVM_B 1WW8_A 3NV9_A 1PJ2_A 1PJL_B 1GZ3_A 1PJ4_A 1PJ3_C 1EFL_A 1EFK_B ....

>cd00762 NAD_bind_malic_enz NAD(P) binding domain of malic enzyme

Probab=100.00  E-value=3e-41  Score=352.68  Aligned_cols=183  Identities=31%  Similarity=0.472  Sum_probs=165.3

Q ss_pred             CcccccccCCCCCCceEEEeccchhHHHHHHHHHHHHHhcCCCccccCCeEEEEcCCCccccCCCCCCCChhhhh---hc
Q psy14377          1 LLASLRITKTRLSDNTILFQGAGEASLGIADLCVMAMQKEGTSEQDARDKIWMVDSKGLIVKDRPEGGVTGHKVH---YA   77 (848)
Q Consensus         1 llnal~i~gK~i~d~kiV~~GAGaA~ia~a~L~~~am~~~G~~~e~~~~ni~m~DskGvi~~~R~d~~l~~~k~~---~a   77 (848)
                      ||||||++||+++|+||||+|||+||++||+||+.+|.+.|+++|||++|||||||+|+|+++|++  |+++|++   |+
T Consensus        12 llnAlk~~g~~l~d~riv~~GAGsAg~gia~ll~~~~~~~Gls~e~A~~~i~~vD~~Gll~~~r~~--l~~~~~~~~~~~   89 (254)
T cd00762          12 LLAALKVTKKKISEHKVLFNGAGAAALGIANLIVXLXVKEGISKEEACKRIWXVDRKGLLVKNRKE--TCPNEYHLARFA   89 (254)
T ss_pred             HHHHHHHhCCChhhcEEEEECcCHHHHHHHHHHHHHHHhcCCCHHHHhccEEEECCCCeEeCCCCc--cCHHHHHHHHHc
Confidence            589999999999999999999999999999999999999999999999999999999999999998  9999988   88


Q ss_pred             ccCCCCCCHHHHhcccCCCchhh-----------hhccCC---ccccccccCC----------------ccccccccCCc
Q psy14377         78 KKHAPVKNLADVVKTVKPSILIE-----------ELKGLS---QRDFLSSWLN----------------RGPCLNCWGKR  127 (848)
Q Consensus        78 ~~~~~~~tL~ea~~~s~~~v~~g-----------~vk~M~---~~piifA~sn----------------~~~~i~atG~~  127 (848)
                      ++..+..+|+||++..|||+|+|           +|+.|+   +|||||+|||                +++||++||||
T Consensus        90 ~~~~~~~~L~eav~~~kptvlIG~S~~~g~ft~evv~~Ma~~~~~PIIFaLSNPt~~aE~tpe~a~~~t~G~ai~AtGsp  169 (254)
T cd00762          90 NPERESGDLEDAVEAAKPDFLIGVSRVGGAFTPEVIRAXAEINERPVIFALSNPTSKAECTAEEAYTATEGRAIFASGSP  169 (254)
T ss_pred             CcccccCCHHHHHHhhCCCEEEEeCCCCCCCCHHHHHHHhhcCCCCEEEECCCcCCccccCHHHHHhhcCCCEEEEECCC
Confidence            87656679999999888999998           999996   9999999999                58899999999


Q ss_pred             CccCCc----------CccceeeecccCh-----------hhHHHHHHhhccCChhhHhhhhhcccccccccCCCCCCCC
Q psy14377        128 DFEQDK----------QGISYSIHASLGI-----------ADLCVMAMQKEGTSEQDARDKIWMVDSKGLIVKDRPEGGV  186 (848)
Q Consensus       128 ~fdypn----------Q~Nnv~vfp~Lgl-----------~~m~~~A~~ala~~v~d~~~~ay~~~~~G~lYPkppd~gI  186 (848)
                        ++|+          |+||+|+||+||+           ++|+++|+++||..+++++.      ..|.+||...  +|
T Consensus       170 --f~pv~~~g~~~~~~Q~NN~~iFPGiglGal~~~a~~itd~m~~aAA~aLA~~v~~~~l------~~~~i~P~~~--~i  239 (254)
T cd00762         170 --FHPVELNGGTYKPGQGNNLYIFPGVALGVILCRIRHITDDVFLSAAEAIASSVTEESL------KPGRLYPPLF--DI  239 (254)
T ss_pred             --CCCcccCCceeecccccceeeccchhhhhHhhcCeECCHHHHHHHHHHHHhhCChhcC------CCCceeCCcc--hh
Confidence              6688          9999999997755           99999999999998887765      6799999444  56


Q ss_pred             ccccccccc
Q psy14377        187 TGHKVHYAK  195 (848)
Q Consensus       187 r~edIavAk  195 (848)
                      +.++..+|.
T Consensus       240 r~vs~~VA~  248 (254)
T cd00762         240 QEVSLNIAV  248 (254)
T ss_pred             hhHHHHHHH
Confidence            666655544

Malic enzyme (ME), a member of the amino acid dehydrogenase (DH)-like domain family, catalyzes the oxidative decarboxylation of L-malate to pyruvate in the presence of cations (typically Mg++ or Mn++) with the concomitant reduction of cofactor NAD+ or NADP+. ME has been found in all organisms and plays important roles in diverse metabolic pathways such as photosynthesis and lipogenesis. This enzyme generally forms homotetramers. The conversion of malate to pyruvate by ME typically involves oxidation of malate to produce oxaloacetate, followed by decarboxylation of oxaloacetate to produce pyruvate and CO2. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glut

>cd05311 NAD_bind_2_malic_enz NAD(P) binding domain of malic enzyme (ME), subgroup 2

Probab=100.00  E-value=1e-32  Score=284.14  Aligned_cols=194  Identities=30%  Similarity=0.452  Sum_probs=161.1

Q ss_pred             EEchhhHHHHHHHHHHHHHhCCcCCCceEEEeccchHHHHHHHHHHHHHHhcCCChhhhcCcEEEEcCCCcccCCCCCCC
Q psy14377        215 LIGESCVNDVAGLLASLRITKTRLSDNTILFQGAGEASLGIADLCVMAMQKEGTSEQDARDKIWMVDSKGLIVKDRPEGG  294 (848)
Q Consensus       215 qhGTA~V~~lAgll~Al~~tg~~l~d~riv~~GAGaAg~gia~ll~~~m~~~G~s~~eA~~~i~~vD~kGLi~~~r~~~~  294 (848)
                      ||||++|+ +||+++|++.+|.+++|+|+||+|||+||.+||++|...    |++    +++||++|++|+++.+|.+ .
T Consensus         1 ~qgt~~v~-lAG~~~al~~~g~~l~~~rvlvlGAGgAg~aiA~~L~~~----G~~----~~~i~ivdr~gl~~~~r~~-~   70 (226)
T cd05311           1 QHGTAIVT-LAGLLNALKLVGKKIEEVKIVINGAGAAGIAIARLLLAA----GAK----PENIVVVDSKGVIYEGRED-D   70 (226)
T ss_pred             CCchHHHH-HHHHHHHHHHhCCCccCCEEEEECchHHHHHHHHHHHHc----CcC----cceEEEEeCCCccccccch-h
Confidence            79999999 999999999999999999999999999999999998764    877    6799999999999999864 3


Q ss_pred             CCccccccccccCCcchhhhhhhccccccHHHHhhhcccccCcccccchhHHHHHhhccccccCCChhhHHHHHHhhccc
Q psy14377        295 VTGHKVHYAKKHAPVKNLADVVKTGMAFSIEERQALGIHGLLPAAVKSQDEQLHLCKLNVDRYEDPLNKYIYLQALAVKT  374 (848)
Q Consensus       295 l~~~k~~~a~~~~~~~~l~~~~n~g~~~~~~er~~~~~~G~~p~~v~~~~~q~~~~~~~~~~~~~~~~~~~~L~~l~~~~  374 (848)
                      +.+++.++++....                        .                                         
T Consensus        71 L~~~~~~la~~~~~------------------------~-----------------------------------------   85 (226)
T cd05311          71 LNPDKNEIAKETNP------------------------E-----------------------------------------   85 (226)
T ss_pred             hhHHHHHHHHHhcc------------------------C-----------------------------------------
Confidence            66555555442210                        0                                         


Q ss_pred             ceeEEEeccCceecccccCCCCCCCcccccccHHHHHcCCCcCccCceeeEEccccccccCCCCCCCHHHHHHHHhcCCC
Q psy14377        375 DIRAIVVTDGERILGLGDLGAYGMGIPVGKLSLYTALAGIKPHQCLPITLDVGTNWRRAAAIPQVFTADILKDMAAFNKR  454 (848)
Q Consensus       375 ~~~~~~~~d~~~l~g~~~~g~~~~~~~~g~~~L~~al~g~kP~~~~~~~v~iG~~~~~~S~~~g~FTeevvk~Ma~~~~r  454 (848)
                                              ++   ..+|.+++.+.        |++||+     |+ +|+||+++++.|+   ++
T Consensus        86 ------------------------~~---~~~l~~~l~~~--------dvlIga-----T~-~G~~~~~~l~~m~---~~  121 (226)
T cd05311          86 ------------------------KT---GGTLKEALKGA--------DVFIGV-----SR-PGVVKKEMIKKMA---KD  121 (226)
T ss_pred             ------------------------cc---cCCHHHHHhcC--------CEEEeC-----CC-CCCCCHHHHHhhC---CC
Confidence                                    00   01344555542        889997     55 9999999999998   79


Q ss_pred             ceEEecCCCCCccCCCHHHHhccCCCcEEEEeCCCCCCcccCCeEEecccchhhccCCeEecchhhhHHHhhccccccCc
Q psy14377        455 PIIFALSNPTSKAECTAEQAYVNTDGRGVFASGSPFDPVTYKGKTFTPGQEYVVELMPIVYTPTVGLACQKYGLIFRRPR  534 (848)
Q Consensus       455 PIIFaLSNPt~~~E~tpe~a~~~T~G~ai~AtGsPf~pv~y~g~~~~~~q~nn~e~lPvvYTPGVG~acl~~~~i~r~p~  534 (848)
                      ||||+||||+  +||++++|++|  |..||+||.          ++.|+|+||+     +.|||+|++++.+++. ++|+
T Consensus       122 ~ivf~lsnP~--~e~~~~~A~~~--ga~i~a~G~----------~~~~~Q~nn~-----~~fPg~~~g~~~~~~~-~i~~  181 (226)
T cd05311         122 PIVFALANPV--PEIWPEEAKEA--GADIVATGR----------SDFPNQVNNV-----LGFPGIFRGALDVRAT-KITE  181 (226)
T ss_pred             CEEEEeCCCC--CcCCHHHHHHc--CCcEEEeCC----------CCCcccccee-----eecchhhHHHHHcCCc-CCCH
Confidence            9999999999  79999999999  555999995          4569999999     5689999999999985 7999


Q ss_pred             cceeeccCcccHHHHHhcC
Q psy14377        535 GLFISIHDKGHISEVLRNW  553 (848)
Q Consensus       535 gm~L~~~d~g~i~eiL~Nw  553 (848)
                      +||++      ..+.|+++
T Consensus       182 ~m~~~------aa~~la~~  194 (226)
T cd05311         182 EMKLA------AAEAIADL  194 (226)
T ss_pred             HHHHH------HHHHHHhh
Confidence            99996      67788776

Malic enzyme (ME), a member of the amino acid dehydrogenase (DH)-like domain family, catalyzes the oxidative decarboxylation of L-malate to pyruvate in the presence of cations (typically Mg++ or Mn++) with the concomitant reduction of cofactor NAD+ or NADP+. ME has been found in all organisms, and plays important roles in diverse metabolic pathways such as photosynthesis and lipogenesis. This enzyme generally forms homotetramers. The conversion of malate to pyruvate by ME typically involves oxidation of malate to produce oxaloacetate, followed by decarboxylation of oxaloacetate to produce pyruvate and CO2. This subfamily consists primarily of archaeal and bacterial ME. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydroph

>cd05311 NAD_bind_2_malic_enz NAD(P) binding domain of malic enzyme (ME), subgroup 2

Probab=99.92  E-value=1.2e-25  Score=231.87  Aligned_cols=163  Identities=20%  Similarity=0.290  Sum_probs=140.6

Q ss_pred             CcccccccCCCCCCceEEEeccchhHHHHHHHHHHHHHhcCCCccccCCeEEEEcCCCccccCCCCCCCChhhhhhcccC
Q psy14377          1 LLASLRITKTRLSDNTILFQGAGEASLGIADLCVMAMQKEGTSEQDARDKIWMVDSKGLIVKDRPEGGVTGHKVHYAKKH   80 (848)
Q Consensus         1 llnal~i~gK~i~d~kiV~~GAGaA~ia~a~L~~~am~~~G~~~e~~~~ni~m~DskGvi~~~R~d~~l~~~k~~~a~~~   80 (848)
                      +++|+++.|++++|.|+||+|||.||.+++++|..    .|+++    ++||++|++|+++.+|.+. |+++|++|+++.
T Consensus        12 ~~~al~~~g~~l~~~rvlvlGAGgAg~aiA~~L~~----~G~~~----~~i~ivdr~gl~~~~r~~~-L~~~~~~la~~~   82 (226)
T cd05311          12 LLNALKLVGKKIEEVKIVINGAGAAGIAIARLLLA----AGAKP----ENIVVVDSKGVIYEGREDD-LNPDKNEIAKET   82 (226)
T ss_pred             HHHHHHHhCCCccCCEEEEECchHHHHHHHHHHHH----cCcCc----ceEEEEeCCCccccccchh-hhHHHHHHHHHh
Confidence            46899999999999999999999999999999984    78863    6999999999999999863 899999998754


Q ss_pred             C--CC-CCHHHHhcccCCCchhh----------hhccCCccccccccCC-----------cccc-ccccCCcCccCCcCc
Q psy14377         81 A--PV-KNLADVVKTVKPSILIE----------ELKGLSQRDFLSSWLN-----------RGPC-LNCWGKRDFEQDKQG  135 (848)
Q Consensus        81 ~--~~-~tL~ea~~~s~~~v~~g----------~vk~M~~~piifA~sn-----------~~~~-i~atG~~~fdypnQ~  135 (848)
                      .  +. .+|.|++++  +|++++          +++.|+++|++|.++|           +..| |+++|++  .+|+|+
T Consensus        83 ~~~~~~~~l~~~l~~--~dvlIgaT~~G~~~~~~l~~m~~~~ivf~lsnP~~e~~~~~A~~~ga~i~a~G~~--~~~~Q~  158 (226)
T cd05311          83 NPEKTGGTLKEALKG--ADVFIGVSRPGVVKKEMIKKMAKDPIVFALANPVPEIWPEEAKEAGADIVATGRS--DFPNQV  158 (226)
T ss_pred             ccCcccCCHHHHHhc--CCEEEeCCCCCCCCHHHHHhhCCCCEEEEeCCCCCcCCHHHHHHcCCcEEEeCCC--CCcccc
Confidence            2  22 378899986  777777          8999999999999999           3346 8999999  779999


Q ss_pred             cceeeecccCh-----------hhHHHHHHhhccCChhhHhhhhhcccccccccCCCC
Q psy14377        136 ISYSIHASLGI-----------ADLCVMAMQKEGTSEQDARDKIWMVDSKGLIVKDRP  182 (848)
Q Consensus       136 Nnv~vfp~Lgl-----------~~m~~~A~~ala~~v~d~~~~ay~~~~~G~lYPkpp  182 (848)
                      ||+++||+||+           ++|..+|++++|..+++++.      ..|.+||...
T Consensus       159 nn~~~fPg~~~g~~~~~~~~i~~~m~~~aa~~la~~~~~~~~------~~~~~~P~~~  210 (226)
T cd05311         159 NNVLGFPGIFRGALDVRATKITEEMKLAAAEAIADLAEEEVL------GEEYIIPTPF  210 (226)
T ss_pred             ceeeecchhhHHHHHcCCcCCCHHHHHHHHHHHHhhCCcccc------CCCcccCCCC
Confidence            99999997766           99999999999998877665      6799999444

Malic enzyme (ME), a member of the amino acid dehydrogenase (DH)-like domain family, catalyzes the oxidative decarboxylation of L-malate to pyruvate in the presence of cations (typically Mg++ or Mn++) with the concomitant reduction of cofactor NAD+ or NADP+. ME has been found in all organisms, and plays important roles in diverse metabolic pathways such as photosynthesis and lipogenesis. This enzyme generally forms homotetramers. The conversion of malate to pyruvate by ME typically involves oxidation of malate to produce oxaloacetate, followed by decarboxylation of oxaloacetate to produce pyruvate and CO2. This subfamily consists primarily of archaeal and bacterial ME. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydroph

>PF00390 malic: Malic enzyme, N-terminal domain; InterPro: IPR012301 Malic enzymes (malate oxidoreductases) catalyse the oxidative decarboxylation of malate to form pyruvate [], a reaction important in a number of metabolic pathways - e

Probab=99.36  E-value=9.5e-14  Score=140.16  Aligned_cols=59  Identities=71%  Similarity=1.219  Sum_probs=51.0

Q ss_pred             ccceeEEEeccCceecccccCCCCCCCcccccccHHHHHcCCCcCccCceeeEEccccc
Q psy14377        373 KTDIRAIVVTDGERILGLGDLGAYGMGIPVGKLSLYTALAGIKPHQCLPITLDVGTNWR  431 (848)
Q Consensus       373 ~~~~~~~~~~d~~~l~g~~~~g~~~~~~~~g~~~L~~al~g~kP~~~~~~~v~iG~~~~  431 (848)
                      .++||.+||||++++|||||+|++||||++||++||++..|++|+.+|||.+++||||+
T Consensus        64 ~~~v~v~VVTDG~rILGlGD~G~~Gm~I~~GKl~ly~~~gGI~P~~~lPv~LDvGTnn~  122 (182)
T PF00390_consen   64 ERDVRVIVVTDGERILGLGDLGVNGMGIPIGKLALYTACGGIDPSRCLPVCLDVGTNNE  122 (182)
T ss_dssp             -SS--EEEEE-SSSBTTTBS-GGGGHHHHHHHHHHHHHHHS-EGGGEEEEEEESBBS-H
T ss_pred             ccCceEEEEeCchhhccccCcCcceEEeeehhhhhHHhhcCcCcccccCeEeecCcchh
Confidence            35899999999999999999999999999999999999999999999999999999986

g. carbon dioxide released from the reaction may be used in sugar production during the Calvin cycle of photosynthesis []. There are 3 forms of the enzyme []: an NAD-dependent form that decarboxylates oxaloacetate; an NAD-dependent form that does not decarboxylate oxalo-acetate; and an NADPH-dependent form []. Other proteins known to be similar to malic enzymes are the Escherichia coli scfA protein; an enzyme from Zea mays (Maize), formerly thought to be cinnamyl-alcohol dehydrogenase []; and the hypothetical Saccharomyces cerevisiae protein YKL029c. Studies on the duck liver malic enzyme reveals that it can be alkylated by bromopyruvate, resulting in the loss of oxidative decarboxylation and the subsequent enhancement of pyruvate reductase activity []. The alkylated form is able to bind NADPH but not L-malate, indicating impaired substrate-or divalent metal ion-binding in the active site []. Sequence analysis has highlighted a cysteine residue as the point of alkylation, suggesting that it may play an important role in the activity of the enzyme [], although it is absent in the sequences from some species. There are three well conserved regions in the enzyme sequences. Two of them seem to be involved in the binding NAD or NADP. The significance of the third one, located in the central part of the enzymes, is not yet known.; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0055114 oxidation-reduction process; PDB: 2DVM_B 1WW8_A 2HAE_B 1VL6_A 1PJ2_A 1PJL_B 1GZ3_A 1PJ4_A 1PJ3_C 1EFL_A ....

>cd05191 NAD_bind_amino_acid_DH NAD(P) binding domain of amino acid dehydrogenase-like proteins

Probab=97.39  E-value=0.0021  Score=57.25  Aligned_cols=55  Identities=33%  Similarity=0.416  Sum_probs=47.1

Q ss_pred             chhhHHHHHHHHHHHHHhCCcCCCceEEEeccchHHHHHHHHHHHHHHhcCCChhhhcCcEEEEcC
Q psy14377        217 GESCVNDVAGLLASLRITKTRLSDNTILFQGAGEASLGIADLCVMAMQKEGTSEQDARDKIWMVDS  282 (848)
Q Consensus       217 GTA~V~~lAgll~Al~~tg~~l~d~riv~~GAGaAg~gia~ll~~~m~~~G~s~~eA~~~i~~vD~  282 (848)
                      +|+.+. ++.+..+.+..+.+++..+++|+|+|.+|.+++..+.+.    |      .++++++|+
T Consensus         1 ~t~~~~-~~~l~~~~~~~~~~~~~~~v~i~G~G~~g~~~a~~l~~~----~------~~~v~v~~r   55 (86)
T cd05191           1 ATAAGA-VALLKAAGKVTNKSLKGKTVVVLGAGEVGKGIAKLLADE----G------GKKVVLCDR   55 (86)
T ss_pred             ChhHHH-HHHHHHHHHHhCCCCCCCEEEEECCCHHHHHHHHHHHHc----C------CCEEEEEcC
Confidence            467777 889999999999999999999999999999999988764    4      357888877

Amino acid dehydrogenase(DH)-like NAD(P)-binding domains are members of the Rossmann fold superfamily and are found in glutamate, leucine, and phenylalanine DHs (DHs), methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann fold superfamily includes a wide variety of protein families including NAD(P)- binding domains of alcohol DHs, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate DH, lactate/malate DHs, formate/glycerate DHs, siroheme synthases, 6-phosphogluconate DH, amino acid DHs, repressor rex, NAD-binding potassium channel domain, CoA-binding, and ornithine cyclodeaminase-like domains. These domains have an al

>cd05191 NAD_bind_amino_acid_DH NAD(P) binding domain of amino acid dehydrogenase-like proteins

Probab=97.10  E-value=0.0017  Score=57.89  Aligned_cols=55  Identities=38%  Similarity=0.367  Sum_probs=48.4

Q ss_pred             hHHHHHHHHHHHHHhhhCCcCCCceEEecCcchhhHHHHHHHHHHHhcccccccccC
Q psy14377        685 GTASVAVAGLLASLRITKTRLSDNTILFQGAGEGTASVAVAGLLASLRITKTRLSDN  741 (848)
Q Consensus       685 GTaaV~LAgllaAlr~t~~~l~d~riv~~GAG~A~~g~giA~ll~~~~~~~~~~~d~  741 (848)
                      +|+.++++.+..+.+..+.+++..+++++|+|..  |.+++..+.+.+.+++.++|.
T Consensus         1 ~t~~~~~~~l~~~~~~~~~~~~~~~v~i~G~G~~--g~~~a~~l~~~~~~~v~v~~r   55 (86)
T cd05191           1 ATAAGAVALLKAAGKVTNKSLKGKTVVVLGAGEV--GKGIAKLLADEGGKKVVLCDR   55 (86)
T ss_pred             ChhHHHHHHHHHHHHHhCCCCCCCEEEEECCCHH--HHHHHHHHHHcCCCEEEEEcC
Confidence            6899999999999999999999999999999999  999999999976555555544

Amino acid dehydrogenase(DH)-like NAD(P)-binding domains are members of the Rossmann fold superfamily and are found in glutamate, leucine, and phenylalanine DHs (DHs), methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann fold superfamily includes a wide variety of protein families including NAD(P)- binding domains of alcohol DHs, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate DH, lactate/malate DHs, formate/glycerate DHs, siroheme synthases, 6-phosphogluconate DH, amino acid DHs, repressor rex, NAD-binding potassium channel domain, CoA-binding, and ornithine cyclodeaminase-like domains. These domains have an al

>PRK14031 glutamate dehydrogenase; Provisional

Probab=95.56  E-value=0.07  Score=61.71  Aligned_cols=121  Identities=17%  Similarity=0.179  Sum_probs=94.4

Q ss_pred             CCCcchhHHHHHHHHHHHHhhCCceeeeeecCCCc--chHHHHHHHcccC----cee----------ccCCchHHHHHHH
Q psy14377        629 TTGQAYDDFIEEFMQAVVARYGQHVLIQFEDFANH--SAFRFLDTYRNRY----CVF----------NDDIQGTASVAVA  692 (848)
Q Consensus       629 ~~g~~y~~fvdefv~av~~~fGp~~~IqfEDf~~~--naf~lL~ryr~~~----~~F----------nDDiQGTaaV~LA  692 (848)
                      .+-.|...|.-.|+..+.+.+||+.-|--+|++..  .=--+.+.|+...    -+|          .+--+.||-=+.-
T Consensus       134 ~s~~Eler~~r~f~~~L~~~iGp~~dipApDvgt~~~~M~~i~d~y~~~~~~~~g~~tgkp~~~GGs~~r~~aTg~Gv~~  213 (444)
T PRK14031        134 KSNAEVMRFCQAFMLELWRHIGPETDVPAGDIGVGGREVGFMFGMYKKLSHEFTGTFTGKGREFGGSLIRPEATGYGNIY  213 (444)
T ss_pred             CCHHHHHHHHHHHHHHHHhccCCCCccCccccCCCHHHHHHHHHHHHhhcCCcceEECCCccccCCCCCCCcccHHHHHH
Confidence            44566788889999999999999988888888752  2223566665431    233          3334567777788


Q ss_pred             HHHHHHhhhCCcCCCceEEecCcchhhHHHHHHHHHHHhccccccccc-CceecCCCCCCch
Q psy14377        693 GLLASLRITKTRLSDNTILFQGAGEGTASVAVAGLLASLRITKTRLSD-NTILFQGAGEGTA  753 (848)
Q Consensus       693 gllaAlr~t~~~l~d~riv~~GAG~A~~g~giA~ll~~~~~~~~~~~d-~g~i~~~r~~~~~  753 (848)
                      ++-.+++..|.+|++.|++|.|.|..  |...|++|.+++.+-+.++| +|.+|..  .|.+
T Consensus       214 ~~~~~~~~~g~~l~g~rVaVQGfGNV--G~~aA~~L~e~GAkVVaVSD~~G~iy~~--~Gld  271 (444)
T PRK14031        214 FLMEMLKTKGTDLKGKVCLVSGSGNV--AQYTAEKVLELGGKVVTMSDSDGYIYDP--DGID  271 (444)
T ss_pred             HHHHHHHhcCCCcCCCEEEEECCCHH--HHHHHHHHHHCCCEEEEEECCCCeEECC--CCCC
Confidence            88888888899999999999999999  99999999999988888899 9988854  4444

>PRK09754 phenylpropionate dioxygenase ferredoxin reductase subunit; Provisional

Probab=95.36  E-value=0.24  Score=55.30  Aligned_cols=45  Identities=20%  Similarity=0.355  Sum_probs=33.9

Q ss_pred             CCceEEEeccchhHHHHHHHHHHHHHhcCCCccccCCeEEEEcCCCccccCCCC
Q psy14377         13 SDNTILFQGAGEASLGIADLCVMAMQKEGTSEQDARDKIWMVDSKGLIVKDRPE   66 (848)
Q Consensus        13 ~d~kiV~~GAGaA~ia~a~L~~~am~~~G~~~e~~~~ni~m~DskGvi~~~R~d   66 (848)
                      +.-||||+|+|.||++||+-|..    .|.+     -.|.|+|..-...-.|+.
T Consensus         2 ~~~~vvIIGgG~AG~~aA~~Lr~----~~~~-----~~I~li~~e~~~~y~r~~   46 (396)
T PRK09754          2 KEKTIIIVGGGQAAAMAAASLRQ----QGFT-----GELHLFSDERHLPYERPP   46 (396)
T ss_pred             CcCcEEEECChHHHHHHHHHHHh----hCCC-----CCEEEeCCCCCCCCCCCC
Confidence            45689999999999999998874    5643     379999877554445554

>PRK05476 S-adenosyl-L-homocysteine hydrolase; Provisional

Probab=95.09  E-value=0.12  Score=59.61  Aligned_cols=93  Identities=17%  Similarity=0.305  Sum_probs=62.7

Q ss_pred             cCceec----------cCCchHHHHHHHHHHHHHhhhCCcCCCceEEecCcchhhHHHHHHHHHHHhccccccccc-Cce
Q psy14377        675 RYCVFN----------DDIQGTASVAVAGLLASLRITKTRLSDNTILFQGAGEGTASVAVAGLLASLRITKTRLSD-NTI  743 (848)
Q Consensus       675 ~~~~Fn----------DDiQGTaaV~LAgllaAlr~t~~~l~d~riv~~GAG~A~~g~giA~ll~~~~~~~~~~~d-~g~  743 (848)
                      .+|+||          |-..||+--++-++..   .++..+.+.+++|+|+|.-  |.++|..+...++ ++.++| +..
T Consensus       173 ~~Pv~~vn~s~~K~~~dn~~gt~~s~~~ai~r---at~~~l~Gk~VlViG~G~I--G~~vA~~lr~~Ga-~ViV~d~dp~  246 (425)
T PRK05476        173 KFPAINVNDSVTKSKFDNRYGTGESLLDGIKR---ATNVLIAGKVVVVAGYGDV--GKGCAQRLRGLGA-RVIVTEVDPI  246 (425)
T ss_pred             CCCEEecCCcccCccccccHHHHhhhHHHHHH---hccCCCCCCEEEEECCCHH--HHHHHHHHHhCCC-EEEEEcCCch
Confidence            389998          7778998777666654   3466789999999999999  9999999998876 565555 221


Q ss_pred             ecCCCCCCchHHHhhhccccchhhccccCCCceEEeecC
Q psy14377        744 LFQGAGEGTASVAIAGLLASLRITKTRLSDNTILFQGSG  782 (848)
Q Consensus       744 i~~~r~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~s~  782 (848)
                          +.   ......|....  .++++++++|++|...+
T Consensus       247 ----ra---~~A~~~G~~v~--~l~eal~~aDVVI~aTG  276 (425)
T PRK05476        247 ----CA---LQAAMDGFRVM--TMEEAAELGDIFVTATG  276 (425)
T ss_pred             ----hh---HHHHhcCCEec--CHHHHHhCCCEEEECCC
Confidence                10   01111122111  24566778999987653

>PLN02477 glutamate dehydrogenase

Probab=94.63  E-value=0.25  Score=56.74  Aligned_cols=118  Identities=19%  Similarity=0.140  Sum_probs=90.0

Q ss_pred             CCCcchhHHHHHHHHHHHHhhCCceeeeeecCCCcchH---HHHHHHccc----------Ccee----ccCCchHHHHHH
Q psy14377        629 TTGQAYDDFIEEFMQAVVARYGQHVLIQFEDFANHSAF---RFLDTYRNR----------YCVF----NDDIQGTASVAV  691 (848)
Q Consensus       629 ~~g~~y~~fvdefv~av~~~fGp~~~IqfEDf~~~naf---~lL~ryr~~----------~~~F----nDDiQGTaaV~L  691 (848)
                      .+..+-..|...|++++.+-.||..-|-=+|++.. ..   -+.++|+..          -|+.    .+--.-||-=+.
T Consensus       112 ~s~~e~e~l~r~f~~~l~~~iG~~~DipapDvgt~-~~~M~w~~d~y~~~~g~~~~~vtGkp~~~gGs~~r~~aTg~Gv~  190 (410)
T PLN02477        112 LSESELERLTRVFTQKIHDLIGIHTDVPAPDMGTN-AQTMAWILDEYSKFHGFSPAVVTGKPIDLGGSLGREAATGRGVV  190 (410)
T ss_pred             CCHHHHHHHHHHHHHHHHHhcCCCCCcccCCCCCC-HHHHHHHHHHHHHhhCCCCceEeCCCcccCCCCCCCccchHHHH
Confidence            34566788899999999999998666667777653 22   245677651          1211    233345777778


Q ss_pred             HHHHHHHhhhCCcCCCceEEecCcchhhHHHHHHHHHHHhccccccccc-CceecCCCC
Q psy14377        692 AGLLASLRITKTRLSDNTILFQGAGEGTASVAVAGLLASLRITKTRLSD-NTILFQGAG  749 (848)
Q Consensus       692 AgllaAlr~t~~~l~d~riv~~GAG~A~~g~giA~ll~~~~~~~~~~~d-~g~i~~~r~  749 (848)
                      .++-.+++..|.+|++.||+|.|.|..  |-..|++|.+.+.+-+.++| +|.+|...+
T Consensus       191 ~~~~~~~~~~g~~l~g~~VaIqGfGnV--G~~~A~~L~e~GakVVaVsD~~G~iy~~~G  247 (410)
T PLN02477        191 FATEALLAEHGKSIAGQTFVIQGFGNV--GSWAAQLIHEKGGKIVAVSDITGAVKNENG  247 (410)
T ss_pred             HHHHHHHHHcCCCccCCEEEEECCCHH--HHHHHHHHHHcCCEEEEEECCCCeEECCCC
Confidence            888888888899999999999999999  99999999999987777999 999987554

>PRK09414 glutamate dehydrogenase; Provisional

Probab=94.57  E-value=0.2  Score=58.02  Aligned_cols=118  Identities=13%  Similarity=0.140  Sum_probs=91.7

Q ss_pred             CCCcchhHHHHHHHHHHHHhhCCceeeeeecCCCcchH---HHHHHHcccC----------cee----ccCCchHHHHHH
Q psy14377        629 TTGQAYDDFIEEFMQAVVARYGQHVLIQFEDFANHSAF---RFLDTYRNRY----------CVF----NDDIQGTASVAV  691 (848)
Q Consensus       629 ~~g~~y~~fvdefv~av~~~fGp~~~IqfEDf~~~naf---~lL~ryr~~~----------~~F----nDDiQGTaaV~L  691 (848)
                      .+..|-..|...|+.++.+.|||.+-|-=+|++. +..   -+.++|+.-.          |+.    .+--..||-=+.
T Consensus       138 ~s~~Eler~~r~~~~~l~~~iG~~~DipapDvgt-~~~~M~~~~d~y~~~~~~~~g~vtGkp~~~gGs~gr~~aTg~Gv~  216 (445)
T PRK09414        138 KSDAEIMRFCQSFMTELYRHIGPDTDVPAGDIGV-GGREIGYLFGQYKRLTNRFEGVLTGKGLSFGGSLIRTEATGYGLV  216 (445)
T ss_pred             CCHHHHHHHHHHHHHHHHHhcCCCCCcCccccCC-CHHHHHHHHHHHHhhcCcceEEEecCCcccCCCCCCCCcccHHHH
Confidence            3445778899999999999999988888888874 322   2567776531          211    123446777777


Q ss_pred             HHHHHHHhhhCCcCCCceEEecCcchhhHHHHHHHHHHHhccccccccc-CceecCCCC
Q psy14377        692 AGLLASLRITKTRLSDNTILFQGAGEGTASVAVAGLLASLRITKTRLSD-NTILFQGAG  749 (848)
Q Consensus       692 AgllaAlr~t~~~l~d~riv~~GAG~A~~g~giA~ll~~~~~~~~~~~d-~g~i~~~r~  749 (848)
                      .++..+++..+.+|++.||+|.|.|..  |...|++|...+.+-+.++| +|.+|...+
T Consensus       217 ~~~~~~~~~~~~~l~g~rVaIqGfGnV--G~~~A~~L~~~GakVVavsDs~G~iyn~~G  273 (445)
T PRK09414        217 YFAEEMLKARGDSFEGKRVVVSGSGNV--AIYAIEKAQQLGAKVVTCSDSSGYVYDEEG  273 (445)
T ss_pred             HHHHHHHHhcCCCcCCCEEEEECCCHH--HHHHHHHHHHCCCEEEEEEcCCceEECCCC
Confidence            788888888899999999999999999  99999999999987778888 999986543

>PRK14030 glutamate dehydrogenase; Provisional

Probab=94.13  E-value=0.35  Score=56.14  Aligned_cols=117  Identities=13%  Similarity=0.135  Sum_probs=91.1

Q ss_pred             CCCcchhHHHHHHHHHHHHhhCCceeeeeecCCCcchHH---HHHHHccc----Cceec----------cCCchHHHHHH
Q psy14377        629 TTGQAYDDFIEEFMQAVVARYGQHVLIQFEDFANHSAFR---FLDTYRNR----YCVFN----------DDIQGTASVAV  691 (848)
Q Consensus       629 ~~g~~y~~fvdefv~av~~~fGp~~~IqfEDf~~~naf~---lL~ryr~~----~~~Fn----------DDiQGTaaV~L  691 (848)
                      .+..|...|.-.|+..+.+-.||+.-|-=+|++. ++.+   +.+.|+..    ..++.          +--..||-=+.
T Consensus       134 ~s~~Eler~~r~f~~~L~~~iGp~~DIpApDvgt-~~~~M~w~~d~y~~~~~~~~g~vTGkp~~~gGs~gr~~ATg~Gv~  212 (445)
T PRK14030        134 KSDAEIMRFCQAFMLELWRHIGPDTDVPAGDIGV-GGREVGYMFGMYKKLTREFTGTLTGKGLEFGGSLIRPEATGFGAL  212 (445)
T ss_pred             CCHHHHHHHHHHHHHHHHHhcCCCCCccccccCC-CHHHHHHHHHHHHhccCccccEEEccccccCCCCCCCCccHHHHH
Confidence            3445678889999999998889988888888874 3322   45666652    22221          11223777778


Q ss_pred             HHHHHHHhhhCCcCCCceEEecCcchhhHHHHHHHHHHHhccccccccc-CceecCCC
Q psy14377        692 AGLLASLRITKTRLSDNTILFQGAGEGTASVAVAGLLASLRITKTRLSD-NTILFQGA  748 (848)
Q Consensus       692 AgllaAlr~t~~~l~d~riv~~GAG~A~~g~giA~ll~~~~~~~~~~~d-~g~i~~~r  748 (848)
                      .++-.+++..|.+|++.||+|-|.|..  |...|++|.+++.+-+.++| +|.||...
T Consensus       213 ~~~~~~~~~~g~~l~g~~vaIQGfGnV--G~~aA~~L~e~GakvVavSD~~G~i~d~~  268 (445)
T PRK14030        213 YFVHQMLETKGIDIKGKTVAISGFGNV--AWGAATKATELGAKVVTISGPDGYIYDPD  268 (445)
T ss_pred             HHHHHHHHHcCCCcCCCEEEEECCCHH--HHHHHHHHHHCCCEEEEEEcCCceEECCC
Confidence            888888898899999999999999999  99999999999998888999 99998754

>PTZ00079 NADP-specific glutamate dehydrogenase; Provisional

Probab=93.34  E-value=0.54  Score=54.74  Aligned_cols=117  Identities=15%  Similarity=0.206  Sum_probs=91.2

Q ss_pred             CCCcchhHHHHHHHHHHHHhhCCceeeeeecCCCcchHH---HHHHHccc---C-ceec----------cCCchHHHHHH
Q psy14377        629 TTGQAYDDFIEEFMQAVVARYGQHVLIQFEDFANHSAFR---FLDTYRNR---Y-CVFN----------DDIQGTASVAV  691 (848)
Q Consensus       629 ~~g~~y~~fvdefv~av~~~fGp~~~IqfEDf~~~naf~---lL~ryr~~---~-~~Fn----------DDiQGTaaV~L  691 (848)
                      .+..|-..|...||..+.+..||..-|-=.|++. +..+   +.+.|+.-   . .|+-          +--.-||-=++
T Consensus       143 ~s~~El~r~~r~f~~eL~~~IGp~~DvpA~DvGt-~~rem~~~~~~y~~~~~~~~gv~TGK~~~~GGs~~r~eATG~Gv~  221 (454)
T PTZ00079        143 KSDNEVMRFCQSFMTELYRHIGPDTDVPAGDIGV-GGREIGYLFGQYKKLRNNFEGTLTGKNVKWGGSNIRPEATGYGLV  221 (454)
T ss_pred             CCHHHHHHHHHHHHHHHHHhcCCCCccchhhcCC-CHHHHHHHHHHHHHHhCCCCceeCCCCCCCCCCCCCCcccHHHHH
Confidence            3455668899999999999999999999999884 3332   44555542   1 2211          11224777778


Q ss_pred             HHHHHHHhhhCCcCCCceEEecCcchhhHHHHHHHHHHHhccccccccc-CceecCCC
Q psy14377        692 AGLLASLRITKTRLSDNTILFQGAGEGTASVAVAGLLASLRITKTRLSD-NTILFQGA  748 (848)
Q Consensus       692 AgllaAlr~t~~~l~d~riv~~GAG~A~~g~giA~ll~~~~~~~~~~~d-~g~i~~~r  748 (848)
                      .++-.+++..+.+|++.|++|-|.|.-  |...|+.|.+.+.+-+.++| +|.||...
T Consensus       222 ~~~~~~l~~~~~~l~Gk~VaVqG~GnV--g~~aa~~L~e~GakVVavSD~~G~iy~~~  277 (454)
T PTZ00079        222 YFVLEVLKKLNDSLEGKTVVVSGSGNV--AQYAVEKLLQLGAKVLTMSDSDGYIHEPN  277 (454)
T ss_pred             HHHHHHHHHcCCCcCCCEEEEECCCHH--HHHHHHHHHHCCCEEEEEEcCCCcEECCC
Confidence            888888999999999999999999999  99999999999987777999 99998654

>PRK14982 acyl-ACP reductase; Provisional

Probab=93.02  E-value=0.23  Score=55.73  Aligned_cols=103  Identities=17%  Similarity=0.133  Sum_probs=70.7

Q ss_pred             ceeeeeecCCCcchHHHHHHHcccCceeccCCchHHHHHHHHHHHHHhhhCCcCCCceEEecCc-chhhHHHHHHHHHHH
Q psy14377        652 HVLIQFEDFANHSAFRFLDTYRNRYCVFNDDIQGTASVAVAGLLASLRITKTRLSDNTILFQGA-GEGTASVAVAGLLAS  730 (848)
Q Consensus       652 ~~~IqfEDf~~~naf~lL~ryr~~~~~FnDDiQGTaaV~LAgllaAlr~t~~~l~d~riv~~GA-G~A~~g~giA~ll~~  730 (848)
                      ++-|.||||.+-|++                   |+++...++--|.+..+..|++.++++.|| |+-  |--++++|..
T Consensus       119 ~i~ie~~~~TtGNs~-------------------T~~ll~~~V~la~~~lg~~l~~k~VLVtGAtG~I--Gs~lar~L~~  177 (340)
T PRK14982        119 NTTLEWERFTTGNTH-------------------TAYVICRQVEQNAPRLGIDLSKATVAVVGATGDI--GSAVCRWLDA  177 (340)
T ss_pred             cceeccccccCCchh-------------------HHHHHHHHHHHhHHHhccCcCCCEEEEEccChHH--HHHHHHHHHh
Confidence            334666679999999                   678888888889999999999999999999 899  9999999975


Q ss_pred             h-cccccccccCceecCCCCC-CchHHHhhhccccchhhccccCCCceEEeecC
Q psy14377        731 L-RITKTRLSDNTILFQGAGE-GTASVAIAGLLASLRITKTRLSDNTILFQGSG  782 (848)
Q Consensus       731 ~-~~~~~~~~d~g~i~~~r~~-~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~s~  782 (848)
                      . .++++.+.+       |.+ .-......-...+-..+.+++.++|+.|.+.+
T Consensus       178 ~~gv~~lilv~-------R~~~rl~~La~el~~~~i~~l~~~l~~aDiVv~~ts  224 (340)
T PRK14982        178 KTGVAELLLVA-------RQQERLQELQAELGGGKILSLEEALPEADIVVWVAS  224 (340)
T ss_pred             hCCCCEEEEEc-------CCHHHHHHHHHHhccccHHhHHHHHccCCEEEECCc
Confidence            3 444544433       211 11111111001222346688999999886554

>PRK12549 shikimate 5-dehydrogenase; Reviewed

Probab=91.68  E-value=0.37  Score=52.35  Aligned_cols=55  Identities=22%  Similarity=0.279  Sum_probs=44.6

Q ss_pred             hhHHHHHHHHHHHHHhCCcCCCceEEEeccchHHHHHHHHHHHHHHhcCCChhhhcCcEEEEcCC
Q psy14377        219 SCVNDVAGLLASLRITKTRLSDNTILFQGAGEASLGIADLCVMAMQKEGTSEQDARDKIWMVDSK  283 (848)
Q Consensus       219 A~V~~lAgll~Al~~tg~~l~d~riv~~GAGaAg~gia~ll~~~m~~~G~s~~eA~~~i~~vD~k  283 (848)
                      +.=+|..|++.+++-.+..++.++++|+|||.||.+++..+...    |      .++|+++|+.
T Consensus       106 G~NTD~~G~~~~l~~~~~~~~~k~vlIlGaGGaaraia~aL~~~----G------~~~I~I~nR~  160 (284)
T PRK12549        106 GHNTDWSGFAESFRRGLPDASLERVVQLGAGGAGAAVAHALLTL----G------VERLTIFDVD  160 (284)
T ss_pred             EEcCCHHHHHHHHHhhccCccCCEEEEECCcHHHHHHHHHHHHc----C------CCEEEEECCC
Confidence            34557789999998666678889999999999999999987754    7      4579998873

>PRK12749 quinate/shikimate dehydrogenase; Reviewed

Probab=89.88  E-value=0.68  Score=50.61  Aligned_cols=54  Identities=22%  Similarity=0.352  Sum_probs=44.4

Q ss_pred             hhHHHHHHHHHHHHHhCCcCCCceEEEeccchHHHHHHHHHHHHHHhcCCChhhhcCcEEEEcC
Q psy14377        219 SCVNDVAGLLASLRITKTRLSDNTILFQGAGEASLGIADLCVMAMQKEGTSEQDARDKIWMVDS  282 (848)
Q Consensus       219 A~V~~lAgll~Al~~tg~~l~d~riv~~GAGaAg~gia~ll~~~m~~~G~s~~eA~~~i~~vD~  282 (848)
                      +.=+|..|++.+++-.+..+++.+++++|||-|+.+|+-.+..    .|      .++|+++++
T Consensus       103 G~NTD~~Gf~~~l~~~~~~~~~k~vlvlGaGGaarAi~~~l~~----~g------~~~i~i~nR  156 (288)
T PRK12749        103 GYNTDGTGHIRAIKESGFDIKGKTMVLLGAGGASTAIGAQGAI----EG------LKEIKLFNR  156 (288)
T ss_pred             EEecCHHHHHHHHHhcCCCcCCCEEEEECCcHHHHHHHHHHHH----CC------CCEEEEEeC
Confidence            4466788999999988888999999999999998887776544    47      468998886

>TIGR02374 nitri_red_nirB nitrite reductase [NAD(P)H], large subunit

Probab=89.44  E-value=2.9  Score=51.67  Aligned_cols=42  Identities=12%  Similarity=0.020  Sum_probs=31.7

Q ss_pred             EEEeccchhHHHHHHHHHHHHHhcCCCccccCCeEEEEcCCCccccCCCC
Q psy14377         17 ILFQGAGEASLGIADLCVMAMQKEGTSEQDARDKIWMVDSKGLIVKDRPE   66 (848)
Q Consensus        17 iV~~GAGaA~ia~a~L~~~am~~~G~~~e~~~~ni~m~DskGvi~~~R~d   66 (848)
                      |||+|+|.||+.+|+-+..    .+-+    .-.|+++|....+.-+|.-
T Consensus         1 iVIIG~G~AG~~aa~~l~~----~~~~----~~~Itvi~~e~~~~y~r~~   42 (785)
T TIGR02374         1 LVLVGNGMAGHRCIEEVLK----LNRH----MFEITIFGEEPHPNYNRIL   42 (785)
T ss_pred             CEEECCCHHHHHHHHHHHh----cCCC----CCeEEEEeCCCCCCccccc
Confidence            6899999999999997763    4311    1379999988877666654

>cd00401 AdoHcyase S-adenosyl-L-homocysteine hydrolase (AdoHycase) catalyzes the hydrolysis of S-adenosyl-L-homocysteine (AdoHyc) to form adenosine (Ado) and homocysteine (Hcy)

Probab=89.31  E-value=0.96  Score=52.11  Aligned_cols=87  Identities=14%  Similarity=0.250  Sum_probs=59.3

Q ss_pred             cCCchHHHHHHHHHHHHHhhhCCcCCCceEEecCcchhhHHHHHHHHHHHhccccccccc-CceecCCCCCCchHHHhhh
Q psy14377        681 DDIQGTASVAVAGLLASLRITKTRLSDNTILFQGAGEGTASVAVAGLLASLRITKTRLSD-NTILFQGAGEGTASVAIAG  759 (848)
Q Consensus       681 DDiQGTaaV~LAgllaAlr~t~~~l~d~riv~~GAG~A~~g~giA~ll~~~~~~~~~~~d-~g~i~~~r~~~~~~~~~~~  759 (848)
                      |...||+--++-+++.   .++..+.+.+++|+|+|.-  |.++|..+...++ ++.++| +.       .....-...|
T Consensus       179 dn~~g~g~s~~~~i~r---~t~~~l~GktVvViG~G~I--G~~va~~ak~~Ga-~ViV~d~d~-------~R~~~A~~~G  245 (413)
T cd00401         179 DNLYGCRESLIDGIKR---ATDVMIAGKVAVVAGYGDV--GKGCAQSLRGQGA-RVIVTEVDP-------ICALQAAMEG  245 (413)
T ss_pred             cccchhchhhHHHHHH---hcCCCCCCCEEEEECCCHH--HHHHHHHHHHCCC-EEEEEECCh-------hhHHHHHhcC
Confidence            6678999888777665   5577899999999999999  9999999998887 454444 22       1111112223


Q ss_pred             ccccchhhccccCCCceEEeecC
Q psy14377        760 LLASLRITKTRLSDNTILFQGSG  782 (848)
Q Consensus       760 ~~~~~r~~~~~~~~~~~~~~~s~  782 (848)
                      ...-  .+++++.++|++|..++
T Consensus       246 ~~~~--~~~e~v~~aDVVI~atG  266 (413)
T cd00401         246 YEVM--TMEEAVKEGDIFVTTTG  266 (413)
T ss_pred             CEEc--cHHHHHcCCCEEEECCC
Confidence            3111  12456778999997654

The equilibrium lies far on the side of AdoHyc synthesis, but in nature the removal of Ado and Hyc is sufficiently fast, so that the net reaction is in the direction of hydrolysis. Since AdoHyc is a potent inhibitor of S-adenosyl-L-methionine dependent methyltransferases, AdoHycase plays a critical role in the modulation of the activity of various methyltransferases. The enzyme forms homooligomers of 45-50kDa subunits, each binding one molecule of NAD+.

>cd05211 NAD_bind_Glu_Leu_Phe_Val NAD(P) binding domain of glutamate dehydrogenase, leucine dehydrogenase, phenylalanine dehydrogenase, and valine dehydrogenase

Probab=89.03  E-value=0.84  Score=48.08  Aligned_cols=60  Identities=22%  Similarity=0.198  Sum_probs=52.1

Q ss_pred             HHHHHHHHHHHHHhhhCCcCCCceEEecCcchhhHHHHHHHHHHHhccccccccc-CceecCC
Q psy14377        686 TASVAVAGLLASLRITKTRLSDNTILFQGAGEGTASVAVAGLLASLRITKTRLSD-NTILFQG  747 (848)
Q Consensus       686 TaaV~LAgllaAlr~t~~~l~d~riv~~GAG~A~~g~giA~ll~~~~~~~~~~~d-~g~i~~~  747 (848)
                      ||-=+..++-.+++..+.+|+..||+|.|.|.-  |..+|++|.+.+.+.+.++| +|.+|..
T Consensus         2 Tg~Gv~~~~~~~~~~~~~~l~g~~vaIqGfGnV--G~~~a~~L~~~G~~vV~vsD~~g~i~~~   62 (217)
T cd05211           2 TGYGVVVAMKAAMKHLGDSLEGLTVAVQGLGNV--GWGLAKKLAEEGGKVLAVSDPDGYIYDP   62 (217)
T ss_pred             chhHHHHHHHHHHHHcCCCcCCCEEEEECCCHH--HHHHHHHHHHcCCEEEEEEcCCCcEECC
Confidence            444456667778888889999999999999999  99999999999888889999 9988875

Amino acid dehydrogenase (DH) is a widely distributed family of enzymes that catalyzes the oxidative deamination of an amino acid to its keto acid and ammonia with concomitant reduction of NAD(P)+. This subfamily includes glutamate, leucine, phenylalanine, and valine DHs. Glutamate DH is a multi-domain enzyme that catalyzes the reaction from glutamate to 2-oxyoglutarate and ammonia in the presence of NAD or NADP. It is present in all organisms. Enzymes involved in ammonia assimilation are typically NADP+-dependent, while those involved in glutamate catabolism are generally NAD+-dependent. As in other NAD+-dependent DHs, monomers in this family have 2 domains separated by a deep cleft. Here the c-terminal domain contains a modified NAD-binding Rossmann fold with 7 rather than the usual 6 beta strands and one strand anti-parral

>cd01065 NAD_bind_Shikimate_DH NAD(P) binding domain of Shikimate dehydrogenase

Probab=88.98  E-value=1.1  Score=42.93  Aligned_cols=50  Identities=28%  Similarity=0.371  Sum_probs=40.4

Q ss_pred             HHHHHHHHHHHhCCcCCCceEEEeccchHHHHHHHHHHHHHHhcCCChhhhcCcEEEEcC
Q psy14377        223 DVAGLLASLRITKTRLSDNTILFQGAGEASLGIADLCVMAMQKEGTSEQDARDKIWMVDS  282 (848)
Q Consensus       223 ~lAgll~Al~~tg~~l~d~riv~~GAGaAg~gia~ll~~~m~~~G~s~~eA~~~i~~vD~  282 (848)
                      |..|+.+|++-.+..+++.+++|+|+|..|..++..+...    |      -++++++|+
T Consensus         2 d~~g~~~a~~~~~~~~~~~~i~iiG~G~~g~~~a~~l~~~----g------~~~v~v~~r   51 (155)
T cd01065           2 DGLGFVRALEEAGIELKGKKVLILGAGGAARAVAYALAEL----G------AAKIVIVNR   51 (155)
T ss_pred             CHHHHHHHHHhhCCCCCCCEEEEECCcHHHHHHHHHHHHC----C------CCEEEEEcC
Confidence            4568999999888889999999999999888888877542    4      256777765

Shikimate dehydrogenase (DH) is an amino acid DH family member. Shikimate pathway links metabolism of carbohydrates to de novo biosynthesis of aromatic amino acids, quinones and folate. It is essential in plants, bacteria, and fungi but absent in mammals, thus making enzymes involved in this pathway ideal targets for broad spectrum antibiotics and herbicides. Shikimate DH catalyzes the reduction of 3-hydroshikimate to shikimate using the cofactor NADH. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann

>PF00208 ELFV_dehydrog: Glutamate/Leucine/Phenylalanine/Valine dehydrogenase; InterPro: IPR006096 Glutamate, leucine, phenylalanine and valine dehydrogenases are structurally and functionally related

Probab=88.97  E-value=1  Score=48.33  Aligned_cols=108  Identities=19%  Similarity=0.175  Sum_probs=77.1

Q ss_pred             cCCchHHHHHHHHHHHHHhhhCCc-CCCceEEecCcchhhHHHHHHHHHHHhccccccccc-CceecCCCCCCchH----
Q psy14377        681 DDIQGTASVAVAGLLASLRITKTR-LSDNTILFQGAGEGTASVAVAGLLASLRITKTRLSD-NTILFQGAGEGTAS----  754 (848)
Q Consensus       681 DDiQGTaaV~LAgllaAlr~t~~~-l~d~riv~~GAG~A~~g~giA~ll~~~~~~~~~~~d-~g~i~~~r~~~~~~----  754 (848)
                      |--+-||-=+..++-.+++..+.+ ++..|++|-|.|.-  |...|+.|.+.+.+-+.++| +|.||.  ++|.+.    
T Consensus         5 ~~~~aTg~GV~~~~~~~~~~~~~~~l~g~~v~IqGfG~V--G~~~a~~l~~~Ga~vv~vsD~~G~i~~--~~Gld~~~l~   80 (244)
T PF00208_consen    5 GRSEATGYGVAYAIEAALEHLGGDSLEGKRVAIQGFGNV--GSHAARFLAELGAKVVAVSDSSGAIYD--PDGLDVEELL   80 (244)
T ss_dssp             TTTTHHHHHHHHHHHHHHHHTTCHSSTTCEEEEEESSHH--HHHHHHHHHHTTEEEEEEEESSEEEEE--TTEEHHHHHH
T ss_pred             CCCcchHHHHHHHHHHHHHHcCCCCcCCCEEEEECCCHH--HHHHHHHHHHcCCEEEEEecCceEEEc--CCCchHHHHH
Confidence            344567777888888899987776 99999999999999  99999999999988888999 999995  445442    


Q ss_pred             --HHhhhc-cccch---------hhc--ccc-CCCceEEeecCCCcchhhhhh
Q psy14377        755 --VAIAGL-LASLR---------ITK--TRL-SDNTILFQGSGEGTASVAVAG  792 (848)
Q Consensus       755 --~~~~~~-~~~~r---------~~~--~~~-~~~~~~~~~s~~~~~~~~~~~  792 (848)
                        ++..+. +.+..         ...  +.+ .++|||+=-.-+++-.-..+.
T Consensus        81 ~~~~~~~~~v~~~~~~~~~~~~~~~~~~~il~~~~DiliP~A~~~~I~~~~~~  133 (244)
T PF00208_consen   81 RIKEERGSRVDDYPLESPDGAEYIPNDDEILSVDCDILIPCALGNVINEDNAP  133 (244)
T ss_dssp             HHHHHHSSHSTTGTHTCSSTSEEECHHCHGGTSSSSEEEEESSSTSBSCHHHC
T ss_pred             HHHHHhCCcccccccccccceeEeccccccccccccEEEEcCCCCeeCHHHHH
Confidence              233333 22222         000  223 489999988666665544433

They contain a Gly-rich region containing a conserved Lys residue, which has been implicated in the catalytic activity, in each case a reversible oxidative deamination reaction. Glutamate dehydrogenases (1.4.1.2 from EC, 1.4.1.3 from EC, and 1.4.1.4 from EC) (GluDH) are enzymes that catalyse the NAD- and/or NADP-dependent reversible deamination of L-glutamate into alpha-ketoglutarate [, ]. GluDH isozymes are generally involved with either ammonia assimilation or glutamate catabolism. Two separate enzymes are present in yeasts: the NADP-dependent enzyme, which catalyses the amination of alpha-ketoglutarate to L-glutamate; and the NAD-dependent enzyme, which catalyses the reverse reaction [] - this form links the L-amino acids with the Krebs cycle, which provides a major pathway for metabolic interconversion of alpha-amino acids and alpha- keto acids []. Leucine dehydrogenase (1.4.1.9 from EC) (LeuDH) is a NAD-dependent enzyme that catalyses the reversible deamination of leucine and several other aliphatic amino acids to their keto analogues []. Each subunit of this octameric enzyme from Bacillus sphaericus contains 364 amino acids and folds into two domains, separated by a deep cleft. The nicotinamide ring of the NAD+ cofactor binds deep in this cleft, which is thought to close during the hydride transfer step of the catalytic cycle. Phenylalanine dehydrogenase (1.4.1.20 from EC) (PheDH) is na NAD-dependent enzyme that catalyses the reversible deamidation of L-phenylalanine into phenyl-pyruvate []. Valine dehydrogenase (1.4.1.8 from EC) (ValDH) is an NADP-dependent enzyme that catalyses the reversible deamidation of L-valine into 3-methyl-2-oxobutanoate []. This entry represents the C-terminal domain of these proteins.; GO: 0016491 oxidoreductase activity, 0006520 cellular amino acid metabolic process, 0055114 oxidation-reduction process; PDB: 1LEH_A 3AOG_D 3AOE_A 2YFQ_B 2YFH_B 1HRD_A 1K89_A 1AUP_A 1BGV_A 1B26_C ....

>PLN02494 adenosylhomocysteinase

Probab=88.93  E-value=1  Score=52.80  Aligned_cols=86  Identities=15%  Similarity=0.268  Sum_probs=56.6

Q ss_pred             cCCchHHHHHHHHHHHHHhhhCCcCCCceEEecCcchhhHHHHHHHHHHHhccccccccc-CceecCCCCCCchHHHhhh
Q psy14377        681 DDIQGTASVAVAGLLASLRITKTRLSDNTILFQGAGEGTASVAVAGLLASLRITKTRLSD-NTILFQGAGEGTASVAIAG  759 (848)
Q Consensus       681 DDiQGTaaV~LAgllaAlr~t~~~l~d~riv~~GAG~A~~g~giA~ll~~~~~~~~~~~d-~g~i~~~r~~~~~~~~~~~  759 (848)
                      |-..||+--++-|++   |.|+..+...+++|+|.|.-  |.++|+.+...++ ++.+.+ +..       .-..-...|
T Consensus       231 Dn~yGtgqS~~d~i~---r~t~i~LaGKtVvViGyG~I--Gr~vA~~aka~Ga-~VIV~e~dp~-------r~~eA~~~G  297 (477)
T PLN02494        231 DNLYGCRHSLPDGLM---RATDVMIAGKVAVICGYGDV--GKGCAAAMKAAGA-RVIVTEIDPI-------CALQALMEG  297 (477)
T ss_pred             hccccccccHHHHHH---HhcCCccCCCEEEEECCCHH--HHHHHHHHHHCCC-EEEEEeCCch-------hhHHHHhcC
Confidence            457888888877776   45777799999999999999  9999999987766 454443 221       000111112


Q ss_pred             ccccchhhccccCCCceEEeec
Q psy14377        760 LLASLRITKTRLSDNTILFQGS  781 (848)
Q Consensus       760 ~~~~~r~~~~~~~~~~~~~~~s  781 (848)
                      ....  .+++++..+||+|..+
T Consensus       298 ~~vv--~leEal~~ADVVI~tT  317 (477)
T PLN02494        298 YQVL--TLEDVVSEADIFVTTT  317 (477)
T ss_pred             Ceec--cHHHHHhhCCEEEECC
Confidence            2111  2456777888888643

>TIGR01809 Shik-DH-AROM shikimate-5-dehydrogenase, fungal AROM-type

Probab=88.72  E-value=0.9  Score=49.28  Aligned_cols=54  Identities=20%  Similarity=0.142  Sum_probs=43.5

Q ss_pred             hhHHHHHHHHHHHHHhCC--cCCCceEEEeccchHHHHHHHHHHHHHHhcCCChhhhcCcEEEEcC
Q psy14377        219 SCVNDVAGLLASLRITKT--RLSDNTILFQGAGEASLGIADLCVMAMQKEGTSEQDARDKIWMVDS  282 (848)
Q Consensus       219 A~V~~lAgll~Al~~tg~--~l~d~riv~~GAGaAg~gia~ll~~~m~~~G~s~~eA~~~i~~vD~  282 (848)
                      +.=+|..|++.+++-.+.  .+++++++++|||.|+.+++..|..    .|      .++|+++++
T Consensus       102 G~NTD~~G~~~~l~~~~~~~~~~~k~vlvlGaGGaarai~~aL~~----~G------~~~i~I~nR  157 (282)
T TIGR01809       102 GDNTDWDGIAGALANIGKFEPLAGFRGLVIGAGGTSRAAVYALAS----LG------VTDITVINR  157 (282)
T ss_pred             EecCCHHHHHHHHHhhCCccccCCceEEEEcCcHHHHHHHHHHHH----cC------CCeEEEEeC
Confidence            456678899999987663  6889999999999999998887665    48      468998876

This model represents a clade of shikimate-5-dehydrogenases found in Corynebacterium, Mycobacteria and fungi. The fungal sequences are pentafunctional proteins known as AroM which contain the central five seven steps in the chorismate biosynthesis pathway. The Corynebacterium and Mycobacterial sequences represent the sole shikimate-5-dehydrogenases in species which otherwise have every enzyme of the chorismate biosynthesis pathway.

>TIGR01035 hemA glutamyl-tRNA reductase

Probab=88.62  E-value=1.9  Score=49.38  Aligned_cols=48  Identities=27%  Similarity=0.289  Sum_probs=35.8

Q ss_pred             HHHHHHHHHHhCCcCCCceEEEeccchHHHHHHHHHHHHHHhcCCChhhhcCcEEEEcC
Q psy14377        224 VAGLLASLRITKTRLSDNTILFQGAGEASLGIADLCVMAMQKEGTSEQDARDKIWMVDS  282 (848)
Q Consensus       224 lAgll~Al~~tg~~l~d~riv~~GAGaAg~gia~ll~~~m~~~G~s~~eA~~~i~~vD~  282 (848)
                      .+++--|.+..+ .+++.+++|+|+|..|..++..+...    |      ..+++++|+
T Consensus       165 ~~Av~la~~~~~-~l~~~~VlViGaG~iG~~~a~~L~~~----G------~~~V~v~~r  212 (417)
T TIGR01035       165 SAAVELAERIFG-SLKGKKALLIGAGEMGELVAKHLLRK----G------VGKILIANR  212 (417)
T ss_pred             HHHHHHHHHHhC-CccCCEEEEECChHHHHHHHHHHHHC----C------CCEEEEEeC
Confidence            555555555554 48889999999999999999887653    6      357888766

This enzyme, together with glutamate-1-semialdehyde-2,1-aminomutase (TIGR00713), leads to the production of delta-amino-levulinic acid from Glu-tRNA.

>PF01488 Shikimate_DH: Shikimate / quinate 5-dehydrogenase; InterPro: IPR006151 This entry represents a domain found in shikimate and quinate dehydrogenases, as well as glutamyl-tRNA reductases

Probab=88.51  E-value=0.76  Score=44.38  Aligned_cols=36  Identities=28%  Similarity=0.401  Sum_probs=30.9

Q ss_pred             cCCCceEEEeccchHHHHHHHHHHHHHHhcCCChhhhcCcEEEEcC
Q psy14377        237 RLSDNTILFQGAGEASLGIADLCVMAMQKEGTSEQDARDKIWMVDS  282 (848)
Q Consensus       237 ~l~d~riv~~GAGaAg~gia~ll~~~m~~~G~s~~eA~~~i~~vD~  282 (848)
                      ++++.+++|+|||.+|.+++..|...    |      .++|++++|
T Consensus         9 ~l~~~~vlviGaGg~ar~v~~~L~~~----g------~~~i~i~nR   44 (135)
T PF01488_consen    9 DLKGKRVLVIGAGGAARAVAAALAAL----G------AKEITIVNR   44 (135)
T ss_dssp             TGTTSEEEEESSSHHHHHHHHHHHHT----T------SSEEEEEES
T ss_pred             CcCCCEEEEECCHHHHHHHHHHHHHc----C------CCEEEEEEC
Confidence            78999999999999999998877654    7      568998775

Shikimate 5-dehydrogenase (1.1.1.25 from EC) catalyses the conversion of shikimate to 5-dehydroshikimate [, ]. This reaction is part of the shikimate pathway which is involved in the biosynthesis of aromatic amino acids []. Quinate 5-dehydrogenase catalyses the conversion of quinate to 5-dehydroquinate. This reaction is part of the quinate pathway where quinic acid is exploited as a source of carbon in prokaryotes and microbial eukaryotes. Both the shikimate and quinate pathways share two common pathway metabolites, 3-dehydroquinate and dehydroshikimate. Glutamyl-tRNA reductase (1.2.1.70 from EC) catalyzes the first step of tetrapyrrole biosynthesis in plants, archaea and most bacteria. The dimeric enzyme has an unusual V-shaped architecture where each monomer consists of three domains linked by a long 'spinal' alpha-helix. The central catalytic domain specifically recognises the glutamate moiety of the substrate []. ; PDB: 2EV9_B 2CY0_B 1WXD_A 2D5C_A 1NVT_B 2EGG_A 3PWZ_A 3DOO_A 3DON_A 3FBT_C ....

>PRK14027 quinate/shikimate dehydrogenase; Provisional

Probab=88.36  E-value=0.98  Score=49.32  Aligned_cols=54  Identities=20%  Similarity=0.229  Sum_probs=43.1

Q ss_pred             hhHHHHHHHHHHHHHhCCcCCCceEEEeccchHHHHHHHHHHHHHHhcCCChhhhcCcEEEEcC
Q psy14377        219 SCVNDVAGLLASLRITKTRLSDNTILFQGAGEASLGIADLCVMAMQKEGTSEQDARDKIWMVDS  282 (848)
Q Consensus       219 A~V~~lAgll~Al~~tg~~l~d~riv~~GAGaAg~gia~ll~~~m~~~G~s~~eA~~~i~~vD~  282 (848)
                      +.=+|..|++.+++-.+..+++.+++++|||-|+.+|+-.|.+    .|      .++|+++|+
T Consensus       106 G~NTD~~Gf~~~L~~~~~~~~~k~vlilGaGGaarAi~~aL~~----~g------~~~i~i~nR  159 (283)
T PRK14027        106 GHNTDVSGFGRGMEEGLPNAKLDSVVQVGAGGVGNAVAYALVT----HG------VQKLQVADL  159 (283)
T ss_pred             EEcCCHHHHHHHHHhcCcCcCCCeEEEECCcHHHHHHHHHHHH----CC------CCEEEEEcC
Confidence            4456778999999865556888999999999999999887665    47      468988876

>cd01078 NAD_bind_H4MPT_DH NADP binding domain of methylene tetrahydromethanopterin dehydrogenase

Probab=88.30  E-value=1.3  Score=44.75  Aligned_cols=91  Identities=21%  Similarity=0.203  Sum_probs=59.7

Q ss_pred             HHHHHHHHHHHHHhhhCCcCCCceEEecCc-chhhHHHHHHHHHHHhcccccccccCceecCCCCCCch-H-HHh----h
Q psy14377        686 TASVAVAGLLASLRITKTRLSDNTILFQGA-GEGTASVAVAGLLASLRITKTRLSDNTILFQGAGEGTA-S-VAI----A  758 (848)
Q Consensus       686 TaaV~LAgllaAlr~t~~~l~d~riv~~GA-G~A~~g~giA~ll~~~~~~~~~~~d~g~i~~~r~~~~~-~-~~~----~  758 (848)
                      |++.+++.+..+++..+.++++.+++++|+ |..  |-.+++.+...+ .++.+.+       |..... . .+.    .
T Consensus         7 ta~aav~~~~~~l~~~~~~l~~~~vlVlGgtG~i--G~~~a~~l~~~g-~~V~l~~-------R~~~~~~~l~~~l~~~~   76 (194)
T cd01078           7 TAAAAVAAAGKALELMGKDLKGKTAVVLGGTGPV--GQRAAVLLAREG-ARVVLVG-------RDLERAQKAADSLRARF   76 (194)
T ss_pred             HHHHHHHHHHHHHHHhCcCCCCCEEEEECCCCHH--HHHHHHHHHHCC-CEEEEEc-------CCHHHHHHHHHHHHhhc
Confidence            677777777788877788999999999997 999  999999998765 2443322       211100 0 010    0


Q ss_pred             hc------cccchhhccccCCCceEEeecCCCcc
Q psy14377        759 GL------LASLRITKTRLSDNTILFQGSGEGTA  786 (848)
Q Consensus       759 ~~------~~~~r~~~~~~~~~~~~~~~s~~~~~  786 (848)
                      +.      ..+...+.+.+.++|+.|..+.-|..
T Consensus        77 ~~~~~~~~~~~~~~~~~~~~~~diVi~at~~g~~  110 (194)
T cd01078          77 GEGVGAVETSDDAARAAAIKGADVVFAAGAAGVE  110 (194)
T ss_pred             CCcEEEeeCCCHHHHHHHHhcCCEEEECCCCCce
Confidence            11      12233345678899999988777763

Methylene Tetrahydromethanopterin Dehydrogenase (H4MPT DH) NADP binding domain. NADP-dependent H4MPT DH catalyzes the dehydrogenation of methylene- H4MPT and methylene-tetrahydrofolate (H4F) with NADP+ as cofactor. H4F and H4MPT are both cofactors that carry the one-carbon units between the formyl and methyl oxidation level. H4F and H4MPT are structurally analogous to each other with respect to the pterin moiety, but each has distinct side chain. H4MPT is present only in anaerobic methanogenic archaea and aerobic methylotrophic proteobacteria. H4MPT seems to have evolved independently from H4F and functions as a distinct carrier in C1 metabolism. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclo

>COG0373 HemA Glutamyl-tRNA reductase [Coenzyme metabolism]

Probab=87.83  E-value=0.89  Score=52.45  Aligned_cols=112  Identities=20%  Similarity=0.214  Sum_probs=77.2

Q ss_pred             cchHHHHHHHcccCceeccCCchHHHHHHHHHHHHHhhhCCcCCCceEEecCcchhhHHHHHHHHHHHhcccccccccCc
Q psy14377        663 HSAFRFLDTYRNRYCVFNDDIQGTASVAVAGLLASLRITKTRLSDNTILFQGAGEGTASVAVAGLLASLRITKTRLSDNT  742 (848)
Q Consensus       663 ~naf~lL~ryr~~~~~FnDDiQGTaaV~LAgllaAlr~t~~~l~d~riv~~GAG~A~~g~giA~ll~~~~~~~~~~~d~g  742 (848)
                      ..||..=+|+|..--.    -.|--+|.-|++=-|.++.+. |++.+++|+|||..  |-.+|+.|...+++++.+++  
T Consensus       139 qkAi~~gKrvRseT~I----~~~~VSi~saAv~lA~~~~~~-L~~~~vlvIGAGem--~~lva~~L~~~g~~~i~IaN--  209 (414)
T COG0373         139 QKAISVGKRVRSETGI----GKGAVSISSAAVELAKRIFGS-LKDKKVLVIGAGEM--GELVAKHLAEKGVKKITIAN--  209 (414)
T ss_pred             HHHHHHHHHhhcccCC----CCCccchHHHHHHHHHHHhcc-cccCeEEEEcccHH--HHHHHHHHHhCCCCEEEEEc--
Confidence            4677777788875210    023334555555556666555 99999999999999  99999999999988866554  


Q ss_pred             eecCCCCCCchH--HHhh-hccccchhhccccCCCceEEeecCCCcchh
Q psy14377        743 ILFQGAGEGTAS--VAIA-GLLASLRITKTRLSDNTILFQGSGEGTASV  788 (848)
Q Consensus       743 ~i~~~r~~~~~~--~~~~-~~~~~~r~~~~~~~~~~~~~~~s~~~~~~~  788 (848)
                           |+..-+.  .+.. +-.....-+.+.|.++||.|..++.-..-+
T Consensus       210 -----RT~erA~~La~~~~~~~~~l~el~~~l~~~DvVissTsa~~~ii  253 (414)
T COG0373         210 -----RTLERAEELAKKLGAEAVALEELLEALAEADVVISSTSAPHPII  253 (414)
T ss_pred             -----CCHHHHHHHHHHhCCeeecHHHHHHhhhhCCEEEEecCCCcccc
Confidence                 4433332  2222 446667778899999999998876655444

>cd05211 NAD_bind_Glu_Leu_Phe_Val NAD(P) binding domain of glutamate dehydrogenase, leucine dehydrogenase, phenylalanine dehydrogenase, and valine dehydrogenase

Probab=87.67  E-value=1.6  Score=45.93  Aligned_cols=56  Identities=23%  Similarity=0.335  Sum_probs=48.5

Q ss_pred             HHHHHHHHHHhCCcCCCceEEEeccchHHHHHHHHHHHHHHhcCCChhhhcCcEEEEcCCCcccCC
Q psy14377        224 VAGLLASLRITKTRLSDNTILFQGAGEASLGIADLCVMAMQKEGTSEQDARDKIWMVDSKGLIVKD  289 (848)
Q Consensus       224 lAgll~Al~~tg~~l~d~riv~~GAGaAg~gia~ll~~~m~~~G~s~~eA~~~i~~vD~kGLi~~~  289 (848)
                      .-++-.+++-.+.+|+..|++|+|-|..|.+.|++|.+.    |      -+-+.+.|++|-++..
T Consensus         7 ~~~~~~~~~~~~~~l~g~~vaIqGfGnVG~~~a~~L~~~----G------~~vV~vsD~~g~i~~~   62 (217)
T cd05211           7 VVAMKAAMKHLGDSLEGLTVAVQGLGNVGWGLAKKLAEE----G------GKVLAVSDPDGYIYDP   62 (217)
T ss_pred             HHHHHHHHHHcCCCcCCCEEEEECCCHHHHHHHHHHHHc----C------CEEEEEEcCCCcEECC
Confidence            446777888889999999999999999999999998764    7      5678899999988875

Amino acid dehydrogenase (DH) is a widely distributed family of enzymes that catalyzes the oxidative deamination of an amino acid to its keto acid and ammonia with concomitant reduction of NAD(P)+. This subfamily includes glutamate, leucine, phenylalanine, and valine DHs. Glutamate DH is a multi-domain enzyme that catalyzes the reaction from glutamate to 2-oxyoglutarate and ammonia in the presence of NAD or NADP. It is present in all organisms. Enzymes involved in ammonia assimilation are typically NADP+-dependent, while those involved in glutamate catabolism are generally NAD+-dependent. As in other NAD+-dependent DHs, monomers in this family have 2 domains separated by a deep cleft. Here the c-terminal domain contains a modified NAD-binding Rossmann fold with 7 rather than the usual 6 beta strands and one strand anti-parral

>PRK12548 shikimate 5-dehydrogenase; Provisional

Probab=87.56  E-value=1.2  Score=48.41  Aligned_cols=54  Identities=22%  Similarity=0.406  Sum_probs=42.5

Q ss_pred             hhHHHHHHHHHHHHHhCCcCCCceEEEeccchHHHHHHHHHHHHHHhcCCChhhhcCcEEEEcC
Q psy14377        219 SCVNDVAGLLASLRITKTRLSDNTILFQGAGEASLGIADLCVMAMQKEGTSEQDARDKIWMVDS  282 (848)
Q Consensus       219 A~V~~lAgll~Al~~tg~~l~d~riv~~GAGaAg~gia~ll~~~m~~~G~s~~eA~~~i~~vD~  282 (848)
                      +.-+|..|++.+++-.+..+++++++|.|||-+|.+|+..+..    .|      .++|+++++
T Consensus       105 G~NTD~~G~~~~l~~~~~~~~~k~vlI~GAGGagrAia~~La~----~G------~~~V~I~~R  158 (289)
T PRK12548        105 GHITDGLGFVRNLREHGVDVKGKKLTVIGAGGAATAIQVQCAL----DG------AKEITIFNI  158 (289)
T ss_pred             EEecCHHHHHHHHHhcCCCcCCCEEEEECCcHHHHHHHHHHHH----CC------CCEEEEEeC
Confidence            4466788999999877778889999999999888777766544    48      457888776

>COG0334 GdhA Glutamate dehydrogenase/leucine dehydrogenase [Amino acid transport and metabolism]

Probab=87.54  E-value=3  Score=48.23  Aligned_cols=123  Identities=17%  Similarity=0.201  Sum_probs=90.4

Q ss_pred             cCCCCcchhHHHHHHHHHHHHhhCCceeeeeecCCCc--chHHHHHHHcccC-----cee----------ccCCchHHHH
Q psy14377        627 RRTTGQAYDDFIEEFMQAVVARYGQHVLIQFEDFANH--SAFRFLDTYRNRY-----CVF----------NDDIQGTASV  689 (848)
Q Consensus       627 ~R~~g~~y~~fvdefv~av~~~fGp~~~IqfEDf~~~--naf~lL~ryr~~~-----~~F----------nDDiQGTaaV  689 (848)
                      |..+..|-.+|...|++++.+.-||+.-|-=+|++..  .=--+.+.|+.-.     ++|          .+----||-=
T Consensus       110 k~~S~~E~erl~raf~~~i~~~iGp~~dIpApDvgt~~~~m~wm~dey~~i~g~~~~gv~TGKp~~~GGS~~r~~aTg~G  189 (411)
T COG0334         110 KGLSDGELERLSRAFGRAIYRLIGPDTDIPAPDVGTNPQDMAWMMDEYSKIVGNSAPGVFTGKPLELGGSLGRSEATGYG  189 (411)
T ss_pred             ccCCHHHHHHHHHHHHHHHHHhcCCCcEecccccCCCHHHHHHHHHhhhhhcCCCCcceecCCcccccCCCCCCccccee
Confidence            4467778899999999999999999999999999862  1122456665532     111          1222234422


Q ss_pred             HHHHHHHHHhhhCCcCCCceEEecCcchhhHHHHHHHHHHHhccccccccc-CceecCCCCCCch
Q psy14377        690 AVAGLLASLRITKTRLSDNTILFQGAGEGTASVAVAGLLASLRITKTRLSD-NTILFQGAGEGTA  753 (848)
Q Consensus       690 ~LAgllaAlr~t~~~l~d~riv~~GAG~A~~g~giA~ll~~~~~~~~~~~d-~g~i~~~r~~~~~  753 (848)
                      +.-+.-.|++.-+.+|+..||.|-|.|..  |.-.|+.+.+.+.+-+.++| +|.||..  .|.+
T Consensus       190 v~~~~~~a~~~~g~~l~G~rVaVQG~GNV--g~~aa~~l~~~GAkvva~sds~g~i~~~--~Gld  250 (411)
T COG0334         190 VFYAIREALKALGDDLEGARVAVQGFGNV--GQYAAEKLHELGAKVVAVSDSKGGIYDE--DGLD  250 (411)
T ss_pred             hHHHHHHHHHHcCCCcCCCEEEEECccHH--HHHHHHHHHHcCCEEEEEEcCCCceecC--CCCC
Confidence            23333378888888899999999999999  99999999999887778888 9988876  4444

>PRK14192 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional

Probab=87.26  E-value=1.1  Score=49.14  Aligned_cols=72  Identities=14%  Similarity=0.191  Sum_probs=57.4

Q ss_pred             HHHHHHHHHHHHhhhCCcCCCceEEecCcch-hhHHHHHHHHHHHhcccccccccCceecCCCCCCchHHHhhhccccch
Q psy14377        687 ASVAVAGLLASLRITKTRLSDNTILFQGAGE-GTASVAVAGLLASLRITKTRLSDNTILFQGAGEGTASVAIAGLLASLR  765 (848)
Q Consensus       687 aaV~LAgllaAlr~t~~~l~d~riv~~GAG~-A~~g~giA~ll~~~~~~~~~~~d~g~i~~~r~~~~~~~~~~~~~~~~r  765 (848)
                      +-.|-.|++..++-.+.+++.++++++|+|- +  |-++|.+|....+ .+.+|+.      +               .+
T Consensus       139 ~p~T~~gii~~L~~~~i~l~Gk~vvViG~gg~v--Gkpia~~L~~~ga-tVtv~~~------~---------------t~  194 (283)
T PRK14192        139 GSATPAGIMRLLKAYNIELAGKHAVVVGRSAIL--GKPMAMMLLNANA-TVTICHS------R---------------TQ  194 (283)
T ss_pred             cCCcHHHHHHHHHHcCCCCCCCEEEEECCcHHH--HHHHHHHHHhCCC-EEEEEeC------C---------------ch
Confidence            3455589999999999999999999999997 8  9999999988876 5555542      1               12


Q ss_pred             hhccccCCCceEEeecC
Q psy14377        766 ITKTRLSDNTILFQGSG  782 (848)
Q Consensus       766 ~~~~~~~~~~~~~~~s~  782 (848)
                      .+++.+.++||.+...+
T Consensus       195 ~L~~~~~~aDIvI~AtG  211 (283)
T PRK14192        195 NLPELVKQADIIVGAVG  211 (283)
T ss_pred             hHHHHhccCCEEEEccC
Confidence            35666689999998875

>PRK00258 aroE shikimate 5-dehydrogenase; Reviewed

Probab=87.17  E-value=1.4  Score=47.56  Aligned_cols=54  Identities=24%  Similarity=0.244  Sum_probs=43.2

Q ss_pred             hhHHHHHHHHHHHHH-hCCcCCCceEEEeccchHHHHHHHHHHHHHHhcCCChhhhcCcEEEEcC
Q psy14377        219 SCVNDVAGLLASLRI-TKTRLSDNTILFQGAGEASLGIADLCVMAMQKEGTSEQDARDKIWMVDS  282 (848)
Q Consensus       219 A~V~~lAgll~Al~~-tg~~l~d~riv~~GAGaAg~gia~ll~~~m~~~G~s~~eA~~~i~~vD~  282 (848)
                      +.-+|..|++++++- .+..+++.+++|+|+|.+|.+++..+..    .|      ..+|+++++
T Consensus       101 G~NTD~~G~~~~l~~~~~~~~~~k~vlVlGaGg~a~ai~~aL~~----~g------~~~V~v~~R  155 (278)
T PRK00258        101 GDNTDGIGFVRALEERLGVDLKGKRILILGAGGAARAVILPLLD----LG------VAEITIVNR  155 (278)
T ss_pred             EEcccHHHHHHHHHhccCCCCCCCEEEEEcCcHHHHHHHHHHHH----cC------CCEEEEEeC
Confidence            445677889999984 5778999999999999999998887764    36      357888776

>cd05313 NAD_bind_2_Glu_DH NAD(P) binding domain of glutamate dehydrogenase, subgroup 2

Probab=86.53  E-value=1.7  Score=47.19  Aligned_cols=63  Identities=21%  Similarity=0.195  Sum_probs=53.8

Q ss_pred             hHHHHHHHHHHHHHhhhCCcCCCceEEecCcchhhHHHHHHHHHHHhccccccccc-CceecCCCC
Q psy14377        685 GTASVAVAGLLASLRITKTRLSDNTILFQGAGEGTASVAVAGLLASLRITKTRLSD-NTILFQGAG  749 (848)
Q Consensus       685 GTaaV~LAgllaAlr~t~~~l~d~riv~~GAG~A~~g~giA~ll~~~~~~~~~~~d-~g~i~~~r~  749 (848)
                      -||-=+.-++-.+++..+.+|++.|++|.|.|..  |...|++|.+.+.+-+.++| +|.+|...+
T Consensus        16 aTg~Gv~~~~~~~~~~~~~~l~g~~vaIqGfGnV--G~~~a~~L~e~GakvvaVsD~~G~i~~~~G   79 (254)
T cd05313          16 ATGYGLVYFVEEMLKDRNETLKGKRVAISGSGNV--AQYAAEKLLELGAKVVTLSDSKGYVYDPDG   79 (254)
T ss_pred             hhHHHHHHHHHHHHHhcCCCcCCCEEEEECCCHH--HHHHHHHHHHCCCEEEEEECCCceEECCCC
Confidence            4665566777778888899999999999999999  99999999999877777999 999986553

Amino acid dehydrogenase (DH) is a widely distributed family of enzymes that catalyzes the oxidative deamination of an amino acid to its keto acid and ammonia with concomitant reduction of NADP+. Glutamate DH is a multidomain enzyme that catalyzes the reaction from glutamate to 2-oxyoglutarate and ammonia in the presence of NAD or NADP. It is present in all organisms. Enzymes involved in ammonia asimilation are typically NADP+-dependent, while those involved in glutamate catabolism are generally NAD+-dependent. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids t

>cd01080 NAD_bind_m-THF_DH_Cyclohyd NADP binding domain of methylene-tetrahydrofolate dehydrogenase/cyclohydrolase

Probab=86.27  E-value=1.3  Score=44.91  Aligned_cols=72  Identities=14%  Similarity=0.164  Sum_probs=50.3

Q ss_pred             HHHHHHHHHHHhhhCCcCCCceEEecCcch-hhHHHHHHHHHHHhcccccccccCceecCCCCCCchHHHhhhccccchh
Q psy14377        688 SVAVAGLLASLRITKTRLSDNTILFQGAGE-GTASVAVAGLLASLRITKTRLSDNTILFQGAGEGTASVAIAGLLASLRI  766 (848)
Q Consensus       688 aV~LAgllaAlr~t~~~l~d~riv~~GAG~-A~~g~giA~ll~~~~~~~~~~~d~g~i~~~r~~~~~~~~~~~~~~~~r~  766 (848)
                      +++.|++-. ++-...+|.+.+++++|+|. .  |..+|+.|...++ ++.++++-       .              ..
T Consensus        26 ~~~~a~v~l-~~~~~~~l~gk~vlViG~G~~~--G~~~a~~L~~~g~-~V~v~~r~-------~--------------~~   80 (168)
T cd01080          26 CTPAGILEL-LKRYGIDLAGKKVVVVGRSNIV--GKPLAALLLNRNA-TVTVCHSK-------T--------------KN   80 (168)
T ss_pred             ChHHHHHHH-HHHcCCCCCCCEEEEECCcHHH--HHHHHHHHhhCCC-EEEEEECC-------c--------------hh
Confidence            444444443 33345679999999999997 7  9999999988765 45544421       0              23


Q ss_pred             hccccCCCceEEeecCCC
Q psy14377        767 TKTRLSDNTILFQGSGEG  784 (848)
Q Consensus       767 ~~~~~~~~~~~~~~s~~~  784 (848)
                      +.+.+.++||.|...+..
T Consensus        81 l~~~l~~aDiVIsat~~~   98 (168)
T cd01080          81 LKEHTKQADIVIVAVGKP   98 (168)
T ss_pred             HHHHHhhCCEEEEcCCCC
Confidence            556889999999877664

NADP binding domain of the Methylene-Tetrahydrofolate Dehydrogenase/cyclohydrolase (m-THF DH/cyclohydrolase) bifunctional enzyme. Tetrahydrofolate is a versatile carrier of activated one-carbon units. The major one-carbon folate donors are N-5 methyltetrahydrofolate, N5,N10-m-THF, and N10-formayltetrahydrofolate. The oxidation of metabolic intermediate m-THF to m-THF requires the enzyme m-THF DH. In addition, most DHs also have an associated cyclohydrolase activity which catalyzes its hydrolysis to N10-formyltetrahydrofolate. m-THF DH is typically found as part of a multifunctional protein in eukaryotes. NADP-dependent m-THF DH in mammals, birds and yeast are components of a trifunctional enzyme with DH, cyclohydrolase, and synthetase activities. Certain eukaryotic cells also contain homodimeric bifunctional DH/cyclodrolase form. In bacteria, monofucntional DH, as well a

>PF01488 Shikimate_DH: Shikimate / quinate 5-dehydrogenase; InterPro: IPR006151 This entry represents a domain found in shikimate and quinate dehydrogenases, as well as glutamyl-tRNA reductases

Probab=85.86  E-value=1.4  Score=42.54  Aligned_cols=36  Identities=28%  Similarity=0.398  Sum_probs=31.5

Q ss_pred             CCCCceEEEeccchhHHHHHHHHHHHHHhcCCCccccCCeEEEEcC
Q psy14377         11 RLSDNTILFQGAGEASLGIADLCVMAMQKEGTSEQDARDKIWMVDS   56 (848)
Q Consensus        11 ~i~d~kiV~~GAGaA~ia~a~L~~~am~~~G~~~e~~~~ni~m~Ds   56 (848)
                      ++++-|++++|||.+|-+++.-|..    .|+      ++|+++++
T Consensus         9 ~l~~~~vlviGaGg~ar~v~~~L~~----~g~------~~i~i~nR   44 (135)
T PF01488_consen    9 DLKGKRVLVIGAGGAARAVAAALAA----LGA------KEITIVNR   44 (135)
T ss_dssp             TGTTSEEEEESSSHHHHHHHHHHHH----TTS------SEEEEEES
T ss_pred             CcCCCEEEEECCHHHHHHHHHHHHH----cCC------CEEEEEEC
Confidence            7899999999999999999998874    776      48999886

Shikimate 5-dehydrogenase (1.1.1.25 from EC) catalyses the conversion of shikimate to 5-dehydroshikimate [, ]. This reaction is part of the shikimate pathway which is involved in the biosynthesis of aromatic amino acids []. Quinate 5-dehydrogenase catalyses the conversion of quinate to 5-dehydroquinate. This reaction is part of the quinate pathway where quinic acid is exploited as a source of carbon in prokaryotes and microbial eukaryotes. Both the shikimate and quinate pathways share two common pathway metabolites, 3-dehydroquinate and dehydroshikimate. Glutamyl-tRNA reductase (1.2.1.70 from EC) catalyzes the first step of tetrapyrrole biosynthesis in plants, archaea and most bacteria. The dimeric enzyme has an unusual V-shaped architecture where each monomer consists of three domains linked by a long 'spinal' alpha-helix. The central catalytic domain specifically recognises the glutamate moiety of the substrate []. ; PDB: 2EV9_B 2CY0_B 1WXD_A 2D5C_A 1NVT_B 2EGG_A 3PWZ_A 3DOO_A 3DON_A 3FBT_C ....

>KOG0685|consensus

Probab=85.74  E-value=0.96  Score=52.90  Aligned_cols=39  Identities=21%  Similarity=0.266  Sum_probs=30.9

Q ss_pred             ccCCCCCCceEEEeccchhHHHHHHHHHHHHHhcCCCccccCCeEEEEc
Q psy14377          7 ITKTRLSDNTILFQGAGEASLGIADLCVMAMQKEGTSEQDARDKIWMVD   55 (848)
Q Consensus         7 i~gK~i~d~kiV~~GAGaA~ia~a~L~~~am~~~G~~~e~~~~ni~m~D   55 (848)
                      ...+..++-||||+|||.||+++|+-|+.    .|..      |+.++-
T Consensus        14 ~~~~~~~~~kIvIIGAG~AGLaAA~rLle----~gf~------~~~IlE   52 (498)
T KOG0685|consen   14 SGLKARGNAKIVIIGAGIAGLAAATRLLE----NGFI------DVLILE   52 (498)
T ss_pred             hhhhccCCceEEEECCchHHHHHHHHHHH----hCCc------eEEEEE
Confidence            44577888899999999999999997773    6653      776654

>PLN00106 malate dehydrogenase

Probab=85.55  E-value=8.6  Score=43.06  Aligned_cols=49  Identities=16%  Similarity=0.124  Sum_probs=37.2

Q ss_pred             HHHHHHHHhCCcCCCceEEEecc-chHHHHHHHHHHHHHHhcCCChhhhcCcEEEEcCCC
Q psy14377        226 GLLASLRITKTRLSDNTILFQGA-GEASLGIADLCVMAMQKEGTSEQDARDKIWMVDSKG  284 (848)
Q Consensus       226 gll~Al~~tg~~l~d~riv~~GA-GaAg~gia~ll~~~m~~~G~s~~eA~~~i~~vD~kG  284 (848)
                      .-+.|+|..|..-. .||+|.|| |..|..+|..+...    ++     .+.+.++|.+-
T Consensus         5 ~~~~~~~~~~~~~~-~KV~IiGaaG~VG~~~a~~l~~~----~~-----~~el~L~Di~~   54 (323)
T PLN00106          5 SSLRACRAKGGAPG-FKVAVLGAAGGIGQPLSLLMKMN----PL-----VSELHLYDIAN   54 (323)
T ss_pred             hhhhccccccCCCC-CEEEEECCCCHHHHHHHHHHHhC----CC-----CCEEEEEecCC
Confidence            44667777776655 69999999 99999999976642    43     35899999854

>KOG0029|consensus

Probab=85.43  E-value=1  Score=52.95  Aligned_cols=37  Identities=19%  Similarity=0.249  Sum_probs=29.4

Q ss_pred             CCCCCceEEEeccchhHHHHHHHHHHHHHhcCCCccccCCeEEEEcCC
Q psy14377         10 TRLSDNTILFQGAGEASLGIADLCVMAMQKEGTSEQDARDKIWMVDSK   57 (848)
Q Consensus        10 K~i~d~kiV~~GAGaA~ia~a~L~~~am~~~G~~~e~~~~ni~m~Dsk   57 (848)
                      .+.+.-||+|+|||.|||+||+.|..    .|.+       +++...+
T Consensus        11 ~~~~~~~VIVIGAGiaGLsAArqL~~----~G~~-------V~VLEAR   47 (501)
T KOG0029|consen   11 EAGKKKKVIVIGAGLAGLSAARQLQD----FGFD-------VLVLEAR   47 (501)
T ss_pred             cccCCCcEEEECCcHHHHHHHHHHHH----cCCc-------eEEEecc
Confidence            34456699999999999999999984    8974       6666654

>cd01078 NAD_bind_H4MPT_DH NADP binding domain of methylene tetrahydromethanopterin dehydrogenase

Probab=85.19  E-value=2.6  Score=42.57  Aligned_cols=48  Identities=23%  Similarity=0.279  Sum_probs=37.8

Q ss_pred             HHHHHHHHHHhCCcCCCceEEEecc-chHHHHHHHHHHHHHHhcCCChhhhcCcEEEEcC
Q psy14377        224 VAGLLASLRITKTRLSDNTILFQGA-GEASLGIADLCVMAMQKEGTSEQDARDKIWMVDS  282 (848)
Q Consensus       224 lAgll~Al~~tg~~l~d~riv~~GA-GaAg~gia~ll~~~m~~~G~s~~eA~~~i~~vD~  282 (848)
                      ++.+..+++-.|..+++.+++++|+ |..|..++..+...    |       .+++++++
T Consensus        12 v~~~~~~l~~~~~~l~~~~vlVlGgtG~iG~~~a~~l~~~----g-------~~V~l~~R   60 (194)
T cd01078          12 VAAAGKALELMGKDLKGKTAVVLGGTGPVGQRAAVLLARE----G-------ARVVLVGR   60 (194)
T ss_pred             HHHHHHHHHHhCcCCCCCEEEEECCCCHHHHHHHHHHHHC----C-------CEEEEEcC
Confidence            6667777777788999999999997 99999998877643    5       36777665

Methylene Tetrahydromethanopterin Dehydrogenase (H4MPT DH) NADP binding domain. NADP-dependent H4MPT DH catalyzes the dehydrogenation of methylene- H4MPT and methylene-tetrahydrofolate (H4F) with NADP+ as cofactor. H4F and H4MPT are both cofactors that carry the one-carbon units between the formyl and methyl oxidation level. H4F and H4MPT are structurally analogous to each other with respect to the pterin moiety, but each has distinct side chain. H4MPT is present only in anaerobic methanogenic archaea and aerobic methylotrophic proteobacteria. H4MPT seems to have evolved independently from H4F and functions as a distinct carrier in C1 metabolism. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclo

>cd01065 NAD_bind_Shikimate_DH NAD(P) binding domain of Shikimate dehydrogenase

Probab=84.48  E-value=2.3  Score=40.82  Aligned_cols=87  Identities=21%  Similarity=0.231  Sum_probs=56.8

Q ss_pred             HHHHHHHhhhCCcCCCceEEecCcchhhHHHHHHHHHHHhcccccccccCceecCCCCCCchH-HHhhhc---cccchhh
Q psy14377        692 AGLLASLRITKTRLSDNTILFQGAGEGTASVAVAGLLASLRITKTRLSDNTILFQGAGEGTAS-VAIAGL---LASLRIT  767 (848)
Q Consensus       692 AgllaAlr~t~~~l~d~riv~~GAG~A~~g~giA~ll~~~~~~~~~~~d~g~i~~~r~~~~~~-~~~~~~---~~~~r~~  767 (848)
                      .|+.+|++..+..+++.+++|+|+|..  |..+++.+......++.+.+      -.++.... .+..+.   ..+.-..
T Consensus         4 ~g~~~a~~~~~~~~~~~~i~iiG~G~~--g~~~a~~l~~~g~~~v~v~~------r~~~~~~~~~~~~~~~~~~~~~~~~   75 (155)
T cd01065           4 LGFVRALEEAGIELKGKKVLILGAGGA--ARAVAYALAELGAAKIVIVN------RTLEKAKALAERFGELGIAIAYLDL   75 (155)
T ss_pred             HHHHHHHHhhCCCCCCCEEEEECCcHH--HHHHHHHHHHCCCCEEEEEc------CCHHHHHHHHHHHhhcccceeecch
Confidence            588999998888899999999999999  99999999876433443333      11111111 111121   1122233


Q ss_pred             ccccCCCceEEeecCCCcc
Q psy14377        768 KTRLSDNTILFQGSGEGTA  786 (848)
Q Consensus       768 ~~~~~~~~~~~~~s~~~~~  786 (848)
                      .+.+.++|+.+-....+..
T Consensus        76 ~~~~~~~Dvvi~~~~~~~~   94 (155)
T cd01065          76 EELLAEADLIINTTPVGMK   94 (155)
T ss_pred             hhccccCCEEEeCcCCCCC
Confidence            4447899999988877765

Shikimate dehydrogenase (DH) is an amino acid DH family member. Shikimate pathway links metabolism of carbohydrates to de novo biosynthesis of aromatic amino acids, quinones and folate. It is essential in plants, bacteria, and fungi but absent in mammals, thus making enzymes involved in this pathway ideal targets for broad spectrum antibiotics and herbicides. Shikimate DH catalyzes the reduction of 3-hydroshikimate to shikimate using the cofactor NADH. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann

>TIGR00936 ahcY adenosylhomocysteinase

Probab=84.42  E-value=2.5  Score=48.77  Aligned_cols=54  Identities=20%  Similarity=0.334  Sum_probs=42.3

Q ss_pred             cCCchHHHHHHHHHHHHHhhhCCcCCCceEEecCcchhhHHHHHHHHHHHhccccccccc
Q psy14377        681 DDIQGTASVAVAGLLASLRITKTRLSDNTILFQGAGEGTASVAVAGLLASLRITKTRLSD  740 (848)
Q Consensus       681 DDiQGTaaV~LAgllaAlr~t~~~l~d~riv~~GAG~A~~g~giA~ll~~~~~~~~~~~d  740 (848)
                      |.-.||+--++-+++   |.++..+...+++|+|.|.-  |.++|..+...+. ++.+++
T Consensus       172 Dn~yg~g~s~~~~i~---r~t~~~l~Gk~VvViG~G~I--G~~vA~~ak~~Ga-~ViV~d  225 (406)
T TIGR00936       172 DNRYGTGQSTIDGIL---RATNLLIAGKTVVVAGYGWC--GKGIAMRARGMGA-RVIVTE  225 (406)
T ss_pred             hcccccchhHHHHHH---HhcCCCCCcCEEEEECCCHH--HHHHHHHHhhCcC-EEEEEe
Confidence            667888876665554   45676789999999999999  9999999988775 455444

This enzyme hydrolyzes adenosylhomocysteine as part of a cycle for the regeneration of the methyl donor S-adenosylmethionine. Species that lack this enzyme are likely to have adenosylhomocysteine nucleosidase (EC 3.2.2.9), an enzyme which also acts as 5'-methyladenosine nucleosidase (see TIGR01704).

>PF07992 Pyr_redox_2: Pyridine nucleotide-disulphide oxidoreductase; InterPro: IPR023753 FAD flavoproteins belonging to the family of pyridine nucleotide-disulphide oxidoreductases (glutathione reductase, trypanothione reductase, lipoamide dehydrogenase, mercuric reductase, thioredoxin reductase, alkyl hydroperoxide reductase) share sequence similarity with a number of other flavoprotein oxidoreductases, in particular with ferredoxin-NAD+ reductases involved in oxidative metabolism of a variety of hydrocarbons (rubredoxin reductase, putidaredoxin reductase, terpredoxin reductase, ferredoxin-NAD+ reductase components of benzene 1,2-dioxygenase, toluene 1,2-dioxygenase, chlorobenzene dioxygenase, biphenyl dioxygenase), NADH oxidase and NADH peroxidase [, , ]

Probab=84.36  E-value=1.7  Score=42.80  Aligned_cols=32  Identities=22%  Similarity=0.369  Sum_probs=25.8

Q ss_pred             eEEEeccchhHHHHHHHHHHHHHhcCCCccccCCeEEEEcCCC
Q psy14377         16 TILFQGAGEASLGIADLCVMAMQKEGTSEQDARDKIWMVDSKG   58 (848)
Q Consensus        16 kiV~~GAGaA~ia~a~L~~~am~~~G~~~e~~~~ni~m~DskG   58 (848)
                      ||||+|+|.||++||.-+..    .|.       +++++|+..
T Consensus         1 ~vvIIGgG~aGl~aA~~l~~----~~~-------~v~ii~~~~   32 (201)
T PF07992_consen    1 DVVIIGGGPAGLSAALELAR----PGA-------KVLIIEKSP   32 (201)
T ss_dssp             EEEEESSSHHHHHHHHHHHH----TTS-------EEEEESSSS
T ss_pred             CEEEEecHHHHHHHHHHHhc----CCC-------eEEEEeccc
Confidence            69999999999999998773    554       788886544

Comparison of the crystal structures of human glutathione reductase and Escherichia coli thioredoxin reductase reveals different locations of their active sites, suggesting that the enzymes diverged from an ancestral FAD/NAD(P)H reductase and acquired their disulphide reductase activities independently []. Despite functional similarities, oxidoreductases of this family show no sequence similarity with adrenodoxin reductases [] and flavoprotein pyridine nucleotide cytochrome reductases (FPNCR) []. Assuming that disulphide reductase activity emerged later, during divergent evolution, the family can be referred to as FAD-dependent pyridine nucleotide reductases, FADPNR. To date, 3D structures of glutathione reductase [], thioredoxin reductase [], mercuric reductase [], lipoamide dehydrogenase [], trypanothione reductase [] and NADH peroxidase [] have been solved. The enzymes share similar tertiary structures based on a doubly-wound alpha/beta fold, but the relative orientations of their FAD- and NAD(P)H-binding domains may vary significantly. By contrast with the FPNCR family, the folds of the FAD- and NAD(P)H-binding domains are similar, suggesting that the domains evolved by gene duplication []. This entry describes the FAD binding domain which has a nested NADH binding domain and is found in both class I and class II oxidoreductases. ; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 3IC9_A 1Q1W_A 3LB8_A 1Q1R_B 3GD4_A 1GV4_A 3GD3_A 2EQ9_E 2EQ6_B 2EQ8_E ....

>PF00670 AdoHcyase_NAD: S-adenosyl-L-homocysteine hydrolase, NAD binding domain; InterPro: IPR015878 S-adenosyl-L-homocysteine hydrolase (3

Probab=84.25  E-value=1.8  Score=44.23  Aligned_cols=85  Identities=22%  Similarity=0.381  Sum_probs=54.3

Q ss_pred             chHHHHHHHHHHHHHhhhCCcCCCceEEecCcchhhHHHHHHHHHHHhccccccccc-CceecCCCCCCchHHHhhhccc
Q psy14377        684 QGTASVAVAGLLASLRITKTRLSDNTILFQGAGEGTASVAVAGLLASLRITKTRLSD-NTILFQGAGEGTASVAIAGLLA  762 (848)
Q Consensus       684 QGTaaV~LAgllaAlr~t~~~l~d~riv~~GAG~A~~g~giA~ll~~~~~~~~~~~d-~g~i~~~r~~~~~~~~~~~~~~  762 (848)
                      .||+--++-|++   |.|+..|...++|++|-|--  |-|+|+.+...++ ++.+.+ +.+       .--+-..+|..+
T Consensus         3 yG~g~S~~d~i~---r~t~~~l~Gk~vvV~GYG~v--G~g~A~~lr~~Ga-~V~V~e~DPi-------~alqA~~dGf~v   69 (162)
T PF00670_consen    3 YGTGQSLVDGIM---RATNLMLAGKRVVVIGYGKV--GKGIARALRGLGA-RVTVTEIDPI-------RALQAAMDGFEV   69 (162)
T ss_dssp             HHHHHHHHHHHH---HHH-S--TTSEEEEE--SHH--HHHHHHHHHHTT--EEEEE-SSHH-------HHHHHHHTT-EE
T ss_pred             cccchhHHHHHH---hcCceeeCCCEEEEeCCCcc--cHHHHHHHhhCCC-EEEEEECChH-------HHHHhhhcCcEe
Confidence            477777777776   46788899999999999999  9999999998874 444444 332       111233346644


Q ss_pred             cchhhccccCCCceEEeecCC
Q psy14377        763 SLRITKTRLSDNTILFQGSGE  783 (848)
Q Consensus       763 ~~r~~~~~~~~~~~~~~~s~~  783 (848)
                      .  ++++++.++||||+..+.
T Consensus        70 ~--~~~~a~~~adi~vtaTG~   88 (162)
T PF00670_consen   70 M--TLEEALRDADIFVTATGN   88 (162)
T ss_dssp             E---HHHHTTT-SEEEE-SSS
T ss_pred             c--CHHHHHhhCCEEEECCCC
Confidence            3  578899999999998775

3.1.1 from EC) (AdoHcyase) is an enzyme of the activated methyl cycle, responsible for the reversible hydration of S-adenosyl-L-homocysteine into adenosine and homocysteine. AdoHcyase is an ubiquitous enzyme which binds and requires NAD+ as a cofactor. AdoHcyase is a highly conserved protein [] of about 430 to 470 amino acids. This entry represents the glycine-rich region in the central part of AdoHcyase, which is thought to be involved in NAD-binding.; GO: 0004013 adenosylhomocysteinase activity; PDB: 2ZJ1_C 3DHY_B 2ZIZ_C 2ZJ0_D 3CE6_B 3GLQ_B 3D64_A 3G1U_C 1A7A_A 3NJ4_C ....

>PF13738 Pyr_redox_3: Pyridine nucleotide-disulphide oxidoreductase; PDB: 3D1C_A 4A9W_B 2YLX_A 2YM2_A 2YLW_A 2YLR_A 2YM1_A 2YLS_A 1W4X_A 2YLT_A

Probab=83.68  E-value=1.3  Score=43.93  Aligned_cols=27  Identities=19%  Similarity=0.330  Sum_probs=20.5

Q ss_pred             CcCCCceEEEeccchHHHHHHHHHHHH
Q psy14377        236 TRLSDNTILFQGAGEASLGIADLCVMA  262 (848)
Q Consensus       236 ~~l~d~riv~~GAGaAg~gia~ll~~~  262 (848)
                      ..+++++++|+|+|..+.-+|..|...
T Consensus       163 ~~~~~k~V~VVG~G~SA~d~a~~l~~~  189 (203)
T PF13738_consen  163 EDFKGKRVVVVGGGNSAVDIAYALAKA  189 (203)
T ss_dssp             GGCTTSEEEEE--SHHHHHHHHHHTTT
T ss_pred             hhcCCCcEEEEcChHHHHHHHHHHHhh
Confidence            368889999999999999888776643

...

>PF00899 ThiF: ThiF family; InterPro: IPR000594 Ubiquitin-activating enzyme (E1 enzyme) [, ] activates ubiquitin by first adenylating with ATP its C-terminal glycine residue and thereafter linking this residue to the side chain of a cysteine residue in E1, yielding an ubiquitin-E1 thiolester and free AMP

Probab=83.62  E-value=1.7  Score=41.57  Aligned_cols=37  Identities=27%  Similarity=0.360  Sum_probs=31.3

Q ss_pred             CCceEEEeccchHHHHHHHHHHHHHHhcCCChhhhcCcEEEEcCCCc
Q psy14377        239 SDNTILFQGAGEASLGIADLCVMAMQKEGTSEQDARDKIWMVDSKGL  285 (848)
Q Consensus       239 ~d~riv~~GAGaAg~gia~ll~~~m~~~G~s~~eA~~~i~~vD~kGL  285 (848)
                      ++.||+++|+|+-|.-+|+.|...    |      .++|.++|.+=+
T Consensus         1 r~~~v~iiG~G~vGs~va~~L~~~----G------v~~i~lvD~d~v   37 (135)
T PF00899_consen    1 RNKRVLIIGAGGVGSEVAKNLARS----G------VGKITLVDDDIV   37 (135)
T ss_dssp             HT-EEEEESTSHHHHHHHHHHHHH----T------TSEEEEEESSBB
T ss_pred             CCCEEEEECcCHHHHHHHHHHHHh----C------CCceeecCCcce
Confidence            368999999999999999998876    8      579999998644

Later the ubiquitin moiety is transferred to a cysteine residue on one of the many forms of ubiquitin- conjugating enzymes (E2). The family of ubiquitin-activating enzymes shares in its catalytic domain significant similarity with a large family of NAD/FAD-binding proteins. This domain is based on the common NAD/FAD-binding fold and finds members of several families, including UBA ubiquitin activating enzymes; the hesA/moeB/thiF family; NADH peroxidases; the LDH family; sarcosin oxidase; phytoene dehydrogenases; alanine dehydrogenases; hydroxyacyl-CoA dehydrogenases and many other NAD/FAD dependent dehydrogenases and oxidases.; GO: 0003824 catalytic activity; PDB: 1ZKM_D 1ZUD_3 1ZFN_D 1R4M_G 2NVU_A 1R4N_C 3DBR_A 3DBH_C 3DBL_G 1YOV_A ....

>cd01076 NAD_bind_1_Glu_DH NAD(P) binding domain of glutamate dehydrogenase, subgroup 1

Probab=82.49  E-value=3.8  Score=43.48  Aligned_cols=57  Identities=21%  Similarity=0.214  Sum_probs=47.6

Q ss_pred             HHHHHHHHHHhCCcCCCceEEEeccchHHHHHHHHHHHHHHhcCCChhhhcCcEEEEcCCCcccCCC
Q psy14377        224 VAGLLASLRITKTRLSDNTILFQGAGEASLGIADLCVMAMQKEGTSEQDARDKIWMVDSKGLIVKDR  290 (848)
Q Consensus       224 lAgll~Al~~tg~~l~d~riv~~GAGaAg~gia~ll~~~m~~~G~s~~eA~~~i~~vD~kGLi~~~r  290 (848)
                      ..++-.+++-.+..|++.||+|+|.|..|.+.|++|.+.    |      .+=+.+.|++|-++...
T Consensus        15 ~~~~~~~~~~~~~~l~~~~v~I~G~G~VG~~~a~~L~~~----g------~~vv~v~D~~g~~~~~~   71 (227)
T cd01076          15 AYATREALKKLGIGLAGARVAIQGFGNVGSHAARFLHEA----G------AKVVAVSDSDGTIYNPD   71 (227)
T ss_pred             HHHHHHHHHhcCCCccCCEEEEECCCHHHHHHHHHHHHC----C------CEEEEEECCCCeEECCC
Confidence            457778888888999999999999999999999987764    6      34455999999998754

Amino acid dehydrogenase (DH) is a widely distributed family of enzymes that catalyzes the oxidative deamination of an amino acid to its keto acid and ammonia with concomitant reduction of NADP+. Glutamate DH is a multidomain enzyme that catalyzes the reaction from glutamate to 2-oxyoglutarate and ammonia in the presence of NAD or NADP. It is present in all organisms. Enzymes involved in ammonia assimilation are typically NADP+-dependent, while those involved in glutamate catabolism are generally NAD+-dependent. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids

>cd05213 NAD_bind_Glutamyl_tRNA_reduct NADP-binding domain of glutamyl-tRNA reductase

Probab=82.47  E-value=2.5  Score=46.39  Aligned_cols=110  Identities=18%  Similarity=0.204  Sum_probs=70.0

Q ss_pred             cchHHHHHHHcccCceeccCCchHHHHHHHHHHHHHhhhCCcCCCceEEecCcchhhHHHHHHHHHHHhcccccccccCc
Q psy14377        663 HSAFRFLDTYRNRYCVFNDDIQGTASVAVAGLLASLRITKTRLSDNTILFQGAGEGTASVAVAGLLASLRITKTRLSDNT  742 (848)
Q Consensus       663 ~naf~lL~ryr~~~~~FnDDiQGTaaV~LAgllaAlr~t~~~l~d~riv~~GAG~A~~g~giA~ll~~~~~~~~~~~d~g  742 (848)
                      .+|+++=++.|...-+.    ++-.+|+.+++-.|.+..+. +.+.+++|+|+|..  |..+++.+...+.+++.+++  
T Consensus       139 ~~a~~~~k~vr~et~i~----~~~~sv~~~Av~~a~~~~~~-l~~~~V~ViGaG~i--G~~~a~~L~~~g~~~V~v~~--  209 (311)
T cd05213         139 QKAIKVGKRVRTETGIS----RGAVSISSAAVELAEKIFGN-LKGKKVLVIGAGEM--GELAAKHLAAKGVAEITIAN--  209 (311)
T ss_pred             HHHHHHHHHHhhhcCCC----CCCcCHHHHHHHHHHHHhCC-ccCCEEEEECcHHH--HHHHHHHHHHcCCCEEEEEe--
Confidence            46777777777764444    23345666666666655554 89999999999999  99999999886666655444  


Q ss_pred             eecCCCCCCch-H-HHhhhc-cccchhhccccCCCceEEeecCCCcc
Q psy14377        743 ILFQGAGEGTA-S-VAIAGL-LASLRITKTRLSDNTILFQGSGEGTA  786 (848)
Q Consensus       743 ~i~~~r~~~~~-~-~~~~~~-~~~~r~~~~~~~~~~~~~~~s~~~~~  786 (848)
                           |...-. . ....|. ..+.-.+.+.+.++|+.|..++....
T Consensus       210 -----r~~~ra~~la~~~g~~~~~~~~~~~~l~~aDvVi~at~~~~~  251 (311)
T cd05213         210 -----RTYERAEELAKELGGNAVPLDELLELLNEADVVISATGAPHY  251 (311)
T ss_pred             -----CCHHHHHHHHHHcCCeEEeHHHHHHHHhcCCEEEECCCCCch
Confidence                 211110 1 111121 11111355677889999998886665

Glutamyl-tRNA reductase catalyzes the conversion of glutamyl-tRNA to glutamate-1-semialdehyde, initiating the synthesis of tetrapyrrole. Whereas tRNAs are generally associated with peptide bond formation in protein translation, here the tRNA activates glutamate in the initiation of tetrapyrrole biosynthesis in archaea, plants and many bacteria. In the first step, activated glutamate is reduced to glutamate-1-semi-aldehyde via the NADPH dependent glutamyl-tRNA reductase. Glutamyl-tRNA reductase forms a V-shaped dimer. Each monomer has 3 domains: an N-terminal catalytic domain, a classic nucleotide binding domain, and a C-terminal dimerization domain. Although the representative structure 1GPJ lacks a bound NADPH, a theoretical binding pocket has been described. (PMID 11172694). Amino acid dehydrogenase (DH)-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate,

>COG0169 AroE Shikimate 5-dehydrogenase [Amino acid transport and metabolism]

Probab=82.38  E-value=2.9  Score=46.05  Aligned_cols=54  Identities=26%  Similarity=0.340  Sum_probs=43.1

Q ss_pred             hhHHHHHHHHHHHHHhC--CcCCCceEEEeccchHHHHHHHHHHHHHHhcCCChhhhcCcEEEEcC
Q psy14377        219 SCVNDVAGLLASLRITK--TRLSDNTILFQGAGEASLGIADLCVMAMQKEGTSEQDARDKIWMVDS  282 (848)
Q Consensus       219 A~V~~lAgll~Al~~tg--~~l~d~riv~~GAGaAg~gia~ll~~~m~~~G~s~~eA~~~i~~vD~  282 (848)
                      +.=+|--|+..+|+-.+  ...+.++++++|||-|+.+++-.|.++    |      .++|++++|
T Consensus       103 G~NTD~~G~~~~L~~~~~~~~~~~~~vlilGAGGAarAv~~aL~~~----g------~~~i~V~NR  158 (283)
T COG0169         103 GYNTDGIGFLRALKEFGLPVDVTGKRVLILGAGGAARAVAFALAEA----G------AKRITVVNR  158 (283)
T ss_pred             EEcCCHHHHHHHHHhcCCCcccCCCEEEEECCcHHHHHHHHHHHHc----C------CCEEEEEeC
Confidence            44556778899988766  566789999999999999998876655    8      568998776

>cd05313 NAD_bind_2_Glu_DH NAD(P) binding domain of glutamate dehydrogenase, subgroup 2

Probab=82.19  E-value=4  Score=44.36  Aligned_cols=57  Identities=19%  Similarity=0.231  Sum_probs=47.4

Q ss_pred             HHHHHHHHHHhCCcCCCceEEEeccchHHHHHHHHHHHHHHhcCCChhhhcCcEEEEcCCCcccCCC
Q psy14377        224 VAGLLASLRITKTRLSDNTILFQGAGEASLGIADLCVMAMQKEGTSEQDARDKIWMVDSKGLIVKDR  290 (848)
Q Consensus       224 lAgll~Al~~tg~~l~d~riv~~GAGaAg~gia~ll~~~m~~~G~s~~eA~~~i~~vD~kGLi~~~r  290 (848)
                      .-++-.+++..+.+|+..|++|+|-|..|.+.|++|.+.    |      .+=+-+.|++|-++...
T Consensus        22 ~~~~~~~~~~~~~~l~g~~vaIqGfGnVG~~~a~~L~e~----G------akvvaVsD~~G~i~~~~   78 (254)
T cd05313          22 VYFVEEMLKDRNETLKGKRVAISGSGNVAQYAAEKLLEL----G------AKVVTLSDSKGYVYDPD   78 (254)
T ss_pred             HHHHHHHHHhcCCCcCCCEEEEECCCHHHHHHHHHHHHC----C------CEEEEEECCCceEECCC
Confidence            457778888889999999999999999999999988764    7      33344999999998754

Amino acid dehydrogenase (DH) is a widely distributed family of enzymes that catalyzes the oxidative deamination of an amino acid to its keto acid and ammonia with concomitant reduction of NADP+. Glutamate DH is a multidomain enzyme that catalyzes the reaction from glutamate to 2-oxyoglutarate and ammonia in the presence of NAD or NADP. It is present in all organisms. Enzymes involved in ammonia asimilation are typically NADP+-dependent, while those involved in glutamate catabolism are generally NAD+-dependent. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids t

>TIGR00518 alaDH alanine dehydrogenase

Probab=82.01  E-value=2  Score=48.56  Aligned_cols=128  Identities=12%  Similarity=0.154  Sum_probs=68.5

Q ss_pred             CCCceEEEeccchhHHHHHHHHHHHHHhcCCCccccCCeEEEEcCCCccccCCCCCCCChhhhhhcc----cCCCCCCHH
Q psy14377         12 LSDNTILFQGAGEASLGIADLCVMAMQKEGTSEQDARDKIWMVDSKGLIVKDRPEGGVTGHKVHYAK----KHAPVKNLA   87 (848)
Q Consensus        12 i~d~kiV~~GAGaA~ia~a~L~~~am~~~G~~~e~~~~ni~m~DskGvi~~~R~d~~l~~~k~~~a~----~~~~~~tL~   87 (848)
                      +..-|++|+|+|.+|..+++.+.    .+|.       +|+++|+.-    .|    +......|..    .......|+
T Consensus       165 l~~~~VlViGaG~vG~~aa~~a~----~lGa-------~V~v~d~~~----~~----~~~l~~~~g~~v~~~~~~~~~l~  225 (370)
T TIGR00518       165 VEPGDVTIIGGGVVGTNAAKMAN----GLGA-------TVTILDINI----DR----LRQLDAEFGGRIHTRYSNAYEIE  225 (370)
T ss_pred             CCCceEEEEcCCHHHHHHHHHHH----HCCC-------eEEEEECCH----HH----HHHHHHhcCceeEeccCCHHHHH
Confidence            56678999999999999999988    4784       588888731    11    1111111211    000113466


Q ss_pred             HHhcccCCCchhh----------------hhccCCccccccccCC-ccccccccCCcCccCCc-CccceeeecccCh-hh
Q psy14377         88 DVVKTVKPSILIE----------------ELKGLSQRDFLSSWLN-RGPCLNCWGKRDFEQDK-QGISYSIHASLGI-AD  148 (848)
Q Consensus        88 ea~~~s~~~v~~g----------------~vk~M~~~piifA~sn-~~~~i~atG~~~fdypn-Q~Nnv~vfp~Lgl-~~  148 (848)
                      ++++.  +|+++.                +++.|.++.+++-+|- .+-++..+--+.+|+|- ..+.|..+-..++ ..
T Consensus       226 ~~l~~--aDvVI~a~~~~g~~~p~lit~~~l~~mk~g~vIvDva~d~GG~~e~~~~t~~d~p~~~~~Gv~~~~v~nlP~~  303 (370)
T TIGR00518       226 DAVKR--ADLLIGAVLIPGAKAPKLVSNSLVAQMKPGAVIVDVAIDQGGCVETSRPTTHDQPTYAVHDVVHYCVANMPGA  303 (370)
T ss_pred             HHHcc--CCEEEEccccCCCCCCcCcCHHHHhcCCCCCEEEEEecCCCCCccCCcCCCCCCCEEEECCeEEEEeCCcccc
Confidence            66663  343332                6777776766665554 44455544322223221 2233444433344 45


Q ss_pred             HHHHHHhhccCC
Q psy14377        149 LCVMAMQKEGTS  160 (848)
Q Consensus       149 m~~~A~~ala~~  160 (848)
                      |-..|++.++..
T Consensus       304 ~p~~aS~~~~~~  315 (370)
T TIGR00518       304 VPKTSTYALTNA  315 (370)
T ss_pred             cHHHHHHHHHHH
Confidence            555566665543

The family of known L-alanine dehydrogenases includes representatives from the Proteobacteria, Firmicutes, and Cyanobacteria, all with about 50 % identity or better. An outlier to this group in both sequence and gap pattern is the homolog from Helicobacter pylori, an epsilon division Proteobacteria, which must be considered a putative alanine dehydrogenase. Related proteins include saccharopine dehydrogenase and the N-terminal half of the NAD(P) transhydrogenase alpha subunit. All of these related proteins bind NAD and/or NADP.

>PF01494 FAD_binding_3: FAD binding domain; InterPro: IPR002938 Monooxygenases incorporate one hydroxyl group into substrates and are found in many metabolic pathways

Probab=81.90  E-value=1.9  Score=45.54  Aligned_cols=34  Identities=21%  Similarity=0.266  Sum_probs=26.8

Q ss_pred             ceEEEeccchhHHHHHHHHHHHHHhcCCCccccCCeEEEEcCCCc
Q psy14377         15 NTILFQGAGEASLGIADLCVMAMQKEGTSEQDARDKIWMVDSKGL   59 (848)
Q Consensus        15 ~kiV~~GAGaA~ia~a~L~~~am~~~G~~~e~~~~ni~m~DskGv   59 (848)
                      .+|+|+|||-||+++|.+|.+    .|.       ++.++|++.-
T Consensus         2 ~dV~IvGaG~aGl~~A~~L~~----~G~-------~v~i~E~~~~   35 (356)
T PF01494_consen    2 YDVAIVGAGPAGLAAALALAR----AGI-------DVTIIERRPD   35 (356)
T ss_dssp             EEEEEE--SHHHHHHHHHHHH----TTC-------EEEEEESSSS
T ss_pred             ceEEEECCCHHHHHHHHHHHh----ccc-------ccccchhccc
Confidence            589999999999999999984    786       5888888554

In this reaction, two atoms of dioxygen are reduced to one hydroxyl group and one H2O molecule by the concomitant oxidation of NAD(P)H []. P-hydroxybenzoate hydroxylase from Pseudomonas fluorescens contains this sequence motif (present in in flavoprotein hydroxylases) with a putative dual function in FAD and NADPH binding [].; PDB: 2Y6R_B 2XYO_C 2Y6Q_C 3P9U_D 2XDO_C 1FOH_D 1PN0_A 3IHG_C 2QA2_A 2VOU_C ....

>PRK12549 shikimate 5-dehydrogenase; Reviewed

Probab=81.70  E-value=1.9  Score=46.89  Aligned_cols=56  Identities=29%  Similarity=0.310  Sum_probs=43.9

Q ss_pred             cCceeccCCchHHHHHHHHHHHHHhhhCCcCCCceEEecCcchhhHHHHHHHHHHHhccccccccc
Q psy14377        675 RYCVFNDDIQGTASVAVAGLLASLRITKTRLSDNTILFQGAGEGTASVAVAGLLASLRITKTRLSD  740 (848)
Q Consensus       675 ~~~~FnDDiQGTaaV~LAgllaAlr~t~~~l~d~riv~~GAG~A~~g~giA~ll~~~~~~~~~~~d  740 (848)
                      ++.=||=|-.        |++.+++-.+..++.++++++|||.+  |-+++..|...+++++.+.|
T Consensus       103 ~l~G~NTD~~--------G~~~~l~~~~~~~~~k~vlIlGaGGa--araia~aL~~~G~~~I~I~n  158 (284)
T PRK12549        103 RRIGHNTDWS--------GFAESFRRGLPDASLERVVQLGAGGA--GAAVAHALLTLGVERLTIFD  158 (284)
T ss_pred             EEEEEcCCHH--------HHHHHHHhhccCccCCEEEEECCcHH--HHHHHHHHHHcCCCEEEEEC
Confidence            3555777754        56667765555678899999999999  99999999999888777665

>PRK12550 shikimate 5-dehydrogenase; Reviewed

Probab=81.69  E-value=3.2  Score=45.23  Aligned_cols=53  Identities=15%  Similarity=0.112  Sum_probs=41.2

Q ss_pred             hhHHHHHHHHHHHHHhCCcCCCceEEEeccchHHHHHHHHHHHHHHhcCCChhhhcCcEEEEcC
Q psy14377        219 SCVNDVAGLLASLRITKTRLSDNTILFQGAGEASLGIADLCVMAMQKEGTSEQDARDKIWMVDS  282 (848)
Q Consensus       219 A~V~~lAgll~Al~~tg~~l~d~riv~~GAGaAg~gia~ll~~~m~~~G~s~~eA~~~i~~vD~  282 (848)
                      +.=+|..|++.+++-.+.+. +.+++++|||-|+.+++-.|.+    .|      .++|+++++
T Consensus       102 G~NTD~~Gf~~~L~~~~~~~-~~~vlilGaGGaarAi~~aL~~----~g------~~~i~i~nR  154 (272)
T PRK12550        102 AYNTDYIAIAKLLASYQVPP-DLVVALRGSGGMAKAVAAALRD----AG------FTDGTIVAR  154 (272)
T ss_pred             EEecCHHHHHHHHHhcCCCC-CCeEEEECCcHHHHHHHHHHHH----CC------CCEEEEEeC
Confidence            44567889999998766653 4699999999999999887664    47      457888876

>COG0373 HemA Glutamyl-tRNA reductase [Coenzyme metabolism]

Probab=81.35  E-value=5.1  Score=46.47  Aligned_cols=48  Identities=29%  Similarity=0.321  Sum_probs=36.4

Q ss_pred             HHHHHHHHHHhCCcCCCceEEEeccchHHHHHHHHHHHHHHhcCCChhhhcCcEEEEcC
Q psy14377        224 VAGLLASLRITKTRLSDNTILFQGAGEASLGIADLCVMAMQKEGTSEQDARDKIWMVDS  282 (848)
Q Consensus       224 lAgll~Al~~tg~~l~d~riv~~GAGaAg~gia~ll~~~m~~~G~s~~eA~~~i~~vD~  282 (848)
                      -|++--|-++.|. |++.+++|+|||..|..+|..|...    |      .++|+++.+
T Consensus       163 saAv~lA~~~~~~-L~~~~vlvIGAGem~~lva~~L~~~----g------~~~i~IaNR  210 (414)
T COG0373         163 SAAVELAKRIFGS-LKDKKVLVIGAGEMGELVAKHLAEK----G------VKKITIANR  210 (414)
T ss_pred             HHHHHHHHHHhcc-cccCeEEEEcccHHHHHHHHHHHhC----C------CCEEEEEcC
Confidence            4455555555554 9999999999999999999887764    7      568887554

>cd01076 NAD_bind_1_Glu_DH NAD(P) binding domain of glutamate dehydrogenase, subgroup 1

Probab=81.27  E-value=3.6  Score=43.67  Aligned_cols=65  Identities=17%  Similarity=0.193  Sum_probs=54.8

Q ss_pred             chHHHHHHHHHHHHHhhhCCcCCCceEEecCcchhhHHHHHHHHHHHhccccccccc-CceecCCCCC
Q psy14377        684 QGTASVAVAGLLASLRITKTRLSDNTILFQGAGEGTASVAVAGLLASLRITKTRLSD-NTILFQGAGE  750 (848)
Q Consensus       684 QGTaaV~LAgllaAlr~t~~~l~d~riv~~GAG~A~~g~giA~ll~~~~~~~~~~~d-~g~i~~~r~~  750 (848)
                      +-||-=+..++-.+++-.+.+|++.||+|.|.|.-  |-++|++|.+.+.+-+.++| +|.+|...+=
T Consensus         8 ~~Tg~Gv~~~~~~~~~~~~~~l~~~~v~I~G~G~V--G~~~a~~L~~~g~~vv~v~D~~g~~~~~~Gl   73 (227)
T cd01076           8 EATGRGVAYATREALKKLGIGLAGARVAIQGFGNV--GSHAARFLHEAGAKVVAVSDSDGTIYNPDGL   73 (227)
T ss_pred             ccchHHHHHHHHHHHHhcCCCccCCEEEEECCCHH--HHHHHHHHHHCCCEEEEEECCCCeEECCCCC
Confidence            45666677778888888888999999999999999  99999999999877777899 9988865543

Amino acid dehydrogenase (DH) is a widely distributed family of enzymes that catalyzes the oxidative deamination of an amino acid to its keto acid and ammonia with concomitant reduction of NADP+. Glutamate DH is a multidomain enzyme that catalyzes the reaction from glutamate to 2-oxyoglutarate and ammonia in the presence of NAD or NADP. It is present in all organisms. Enzymes involved in ammonia assimilation are typically NADP+-dependent, while those involved in glutamate catabolism are generally NAD+-dependent. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids

>TIGR03169 Nterm_to_SelD pyridine nucleotide-disulfide oxidoreductase family protein

Probab=81.22  E-value=2.2  Score=46.69  Aligned_cols=37  Identities=22%  Similarity=0.332  Sum_probs=29.2

Q ss_pred             CceEEEeccchHHHHHHHHHHHHHHhcCCChhhhcCcEEEEc
Q psy14377        240 DNTILFQGAGEASLGIADLCVMAMQKEGTSEQDARDKIWMVD  281 (848)
Q Consensus       240 d~riv~~GAGaAg~gia~ll~~~m~~~G~s~~eA~~~i~~vD  281 (848)
                      .++++|+|+|.+|+-+|..|.....+.|.     +.+|.+++
T Consensus       145 ~~~vvVvG~G~~g~E~A~~l~~~~~~~g~-----~~~V~li~  181 (364)
T TIGR03169       145 TKRLAVVGGGAAGVEIALALRRRLPKRGL-----RGQVTLIA  181 (364)
T ss_pred             CceEEEECCCHHHHHHHHHHHHHHHhcCC-----CceEEEEe
Confidence            36899999999999999999876655563     35787773

Members of this protein family include N-terminal sequence regions of (probable) bifunctional proteins whose C-terminal sequences are SelD, or selenide,water dikinase, the selenium donor protein necessary for selenium incorporation into protein (as selenocysteine), tRNA (as 2-selenouridine), or both. However, some members of this family occur in species that do not show selenium incorporation, and the function of this protein family is unknown.

>PRK08328 hypothetical protein; Provisional

Probab=81.00  E-value=1.5  Score=46.27  Aligned_cols=38  Identities=21%  Similarity=0.365  Sum_probs=32.7

Q ss_pred             CcCCCceEEEeccchHHHHHHHHHHHHHHhcCCChhhhcCcEEEEcCC
Q psy14377        236 TRLSDNTILFQGAGEASLGIADLCVMAMQKEGTSEQDARDKIWMVDSK  283 (848)
Q Consensus       236 ~~l~d~riv~~GAGaAg~gia~ll~~~m~~~G~s~~eA~~~i~~vD~k  283 (848)
                      .+|++.+|+++|+|..|..+|+.|..+    |      .++|.++|.+
T Consensus        23 ~~L~~~~VlIiG~GGlGs~ia~~La~~----G------vg~i~lvD~D   60 (231)
T PRK08328         23 EKLKKAKVAVVGVGGLGSPVAYYLAAA----G------VGRILLIDEQ   60 (231)
T ss_pred             HHHhCCcEEEECCCHHHHHHHHHHHHc----C------CCEEEEEcCC
Confidence            457788999999999999999988765    8      5799999875

>TIGR02354 thiF_fam2 thiamine biosynthesis protein ThiF, family 2

Probab=80.83  E-value=1.8  Score=44.85  Aligned_cols=39  Identities=26%  Similarity=0.267  Sum_probs=33.7

Q ss_pred             CcCCCceEEEeccchHHHHHHHHHHHHHHhcCCChhhhcCcEEEEcCCC
Q psy14377        236 TRLSDNTILFQGAGEASLGIADLCVMAMQKEGTSEQDARDKIWMVDSKG  284 (848)
Q Consensus       236 ~~l~d~riv~~GAGaAg~gia~ll~~~m~~~G~s~~eA~~~i~~vD~kG  284 (848)
                      .+|++.||+|+|+|.-|..||..|..+    |      .+++.++|.+=
T Consensus        17 ~~L~~~~V~IvG~GglGs~ia~~La~~----G------vg~i~lvD~D~   55 (200)
T TIGR02354        17 QKLEQATVAICGLGGLGSNVAINLARA----G------IGKLILVDFDV   55 (200)
T ss_pred             HHHhCCcEEEECcCHHHHHHHHHHHHc----C------CCEEEEECCCE
Confidence            467889999999999999999998765    8      56899999863

Members of the HesA/MoeB/ThiF family of proteins (pfam00899) include a number of members encoded in the midst of thiamine biosynthetic operons. This mix of known and putative ThiF proteins shows a deep split in phylogenetic trees, with one the E. coli ThiF and the E. coli MoeB proteins seemingly more closely related than E. coli ThiF and Campylobacter (for example) ThiF. This model represents the divergent clade of putative ThiF proteins such found in Campylobacter.

>TIGR01292 TRX_reduct thioredoxin-disulfide reductase

Probab=80.68  E-value=2  Score=44.79  Aligned_cols=32  Identities=22%  Similarity=0.314  Sum_probs=26.6

Q ss_pred             eEEEeccchhHHHHHHHHHHHHHhcCCCccccCCeEEEEcCCC
Q psy14377         16 TILFQGAGEASLGIADLCVMAMQKEGTSEQDARDKIWMVDSKG   58 (848)
Q Consensus        16 kiV~~GAGaA~ia~a~L~~~am~~~G~~~e~~~~ni~m~DskG   58 (848)
                      +|||+|||.||+++|..|..    .|.       ++.++|+.-
T Consensus         2 dvvIIG~G~aGl~aA~~l~~----~g~-------~v~lie~~~   33 (300)
T TIGR01292         2 DVIIIGAGPAGLTAAIYAAR----ANL-------KTLIIEGME   33 (300)
T ss_pred             cEEEECCCHHHHHHHHHHHH----CCC-------CEEEEeccC
Confidence            68999999999999998763    674       689999753

This model describes thioredoxin-disulfide reductase, a member of the pyridine nucleotide-disulphide oxidoreductases (PFAM:PF00070).

>TIGR02853 spore_dpaA dipicolinic acid synthetase, A subunit

Probab=80.52  E-value=3.2  Score=45.43  Aligned_cols=88  Identities=13%  Similarity=0.254  Sum_probs=57.0

Q ss_pred             hHHHHHHHHHHHHHhhhCCcCCCceEEecCcchhhHHHHHHHHHHHhcccccccccCceecCCCCCC-chHHHhhhcc-c
Q psy14377        685 GTASVAVAGLLASLRITKTRLSDNTILFQGAGEGTASVAVAGLLASLRITKTRLSDNTILFQGAGEG-TASVAIAGLL-A  762 (848)
Q Consensus       685 GTaaV~LAgllaAlr~t~~~l~d~riv~~GAG~A~~g~giA~ll~~~~~~~~~~~d~g~i~~~r~~~-~~~~~~~~~~-~  762 (848)
                      .+-+++=.++.-+++..+..|.+.+++|+|+|..  |..+|+.+...+. ++.+.+       |.+. .......|.. .
T Consensus       129 n~~~~Ae~ai~~al~~~~~~l~gk~v~IiG~G~i--G~avA~~L~~~G~-~V~v~~-------R~~~~~~~~~~~g~~~~  198 (287)
T TIGR02853       129 NSIPTAEGAIMMAIEHTDFTIHGSNVMVLGFGRT--GMTIARTFSALGA-RVFVGA-------RSSADLARITEMGLIPF  198 (287)
T ss_pred             ccHhHHHHHHHHHHHhcCCCCCCCEEEEEcChHH--HHHHHHHHHHCCC-EEEEEe-------CCHHHHHHHHHCCCeee
Confidence            3344554556667777888999999999999999  9999999998775 544443       1110 1111112221 1


Q ss_pred             cchhhccccCCCceEEeecC
Q psy14377        763 SLRITKTRLSDNTILFQGSG  782 (848)
Q Consensus       763 ~~r~~~~~~~~~~~~~~~s~  782 (848)
                      ..-.+.+.+.++|+.|-...
T Consensus       199 ~~~~l~~~l~~aDiVint~P  218 (287)
T TIGR02853       199 PLNKLEEKVAEIDIVINTIP  218 (287)
T ss_pred             cHHHHHHHhccCCEEEECCC
Confidence            12235677889999997653

This predicted Rossman fold-containing protein is the A subunit of dipicolinic acid synthetase as found in most, though not all, endospore-forming low-GC Gram-positive bacteria; it is absent in Clostridium. The B subunit is represented by TIGR02852. This protein is also known as SpoVFA.

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	848
1gq2_A	555	Malic Enzyme From Pigeon Liver Length = 555		3e-87
1gq2_A	555	Malic Enzyme From Pigeon Liver Length = 555		1e-08
1gq2_A	555	Malic Enzyme From Pigeon Liver Length = 555		1e-06
2aw5_A	575	Crystal Structure Of A Human Malic Enzyme Length =		2e-86
2aw5_A	575	Crystal Structure Of A Human Malic Enzyme Length =		2e-08
2aw5_A	575	Crystal Structure Of A Human Malic Enzyme Length =		6e-08
1gz3_A	554	Molecular Mechanism For The Regulation Of Human Mit		3e-79
1gz3_A	554	Molecular Mechanism For The Regulation Of Human Mit		4e-07
1efk_A	584	Structure Of Human Malic Enzyme In Complex With Ket		4e-76
1efk_A	584	Structure Of Human Malic Enzyme In Complex With Ket		2e-06
1qr6_A	584	Human Mitochondrial Nad(P)-Dependent Malic Enzyme L		4e-76
1qr6_A	584	Human Mitochondrial Nad(P)-Dependent Malic Enzyme L		2e-06
1do8_A	564	Crystal Structure Of A Closed Form Of Human Mitocho		4e-76
1do8_A	564	Crystal Structure Of A Closed Form Of Human Mitocho		2e-06
1gz4_A	551	Molecular Mechanism Of The Regulation Of Human Mito		6e-76
1gz4_A	551	Molecular Mechanism Of The Regulation Of Human Mito		2e-06
1llq_A	605	Crystal Structure Of Malic Enzyme From Ascaris Suum		1e-73
1llq_A	605	Crystal Structure Of Malic Enzyme From Ascaris Suum		3e-09
2dvm_A	439	Nad Complex Structure Of Ph1275 Protein From Pyroco		3e-06
1ww8_A	439	Crystal Structure Of Malic Enzyme From Pyrococcus H		3e-06
3nv9_A	487	Crystal Structure Of Entamoeba Histolytica Malic En		1e-05
1vl6_A	388	Crystal Structure Of Nad-Dependent Malic Enzyme (Tm		2e-04
2hae_A	386	Crystal Structure Of A Putative Malic Enzyme (Malat		3e-04
2a9f_A	398	Crystal Structure Of A Putative Malic Enzyme ((S)-		7e-04

>pdb|1GQ2|A Chain A, Malic Enzyme From Pigeon Liver Length = 555

Iteration: 1
 Score =  320 bits (819), Expect = 3e-87,   Method: Compositional matrix adjust.
 Identities = 145/212 (68%), Positives = 168/212 (79%)
Query: 507 VVELMPIVYTPTVGLACQKYGLIFRRPRGLFISIHDKGHISEVLRNWPETDIRAIVVTDG 566
           +    PIVYTPTVGLACQ YGL FRRPRGLFI+IHD+GHI+  L++WPE+ I+AIVVTDG
Sbjct: 82  IERFXPIVYTPTVGLACQHYGLAFRRPRGLFITIHDRGHIATXLQSWPESVIKAIVVTDG 141
Query: 567 ERILGLGDLGAYGMGIPVGKLSLYTALAGIKPHQCLPITLDVGTNTQQLLDDPLYIGLRQ 626
           ERILGLGDLG YG GIPVGKL+LYTA  G+KPHQCLP+ LDVGT+ + LL DPLYIGLR 
Sbjct: 142 ERILGLGDLGCYGXGIPVGKLALYTACGGVKPHQCLPVXLDVGTDNETLLKDPLYIGLRH 201
Query: 627 RRTTGQAYDDFIEEFMQAVVARYGQHVLIQFEDFANHSAFRFLDTYRNRYCVFNDDIQGT 686
           +R  GQAYDD ++EF +AV +RYG + LIQFEDFAN +AFR L  YRN+YC FNDDIQGT
Sbjct: 202 KRIRGQAYDDLLDEFXEAVTSRYGXNCLIQFEDFANANAFRLLHKYRNKYCTFNDDIQGT 261
Query: 687 XXXXXXXXXXXXRITKTRLSDNTILFQGAGEG 718
                       RITK RLSD+T+LFQGAGE 
Sbjct: 262 ASVAVAGLLAALRITKNRLSDHTVLFQGAGEA 293

>pdb|1GQ2|A Chain A, Malic Enzyme From Pigeon Liver Length = 555

Iteration: 1
 Score = 58.9 bits (141), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 27/35 (77%), Positives = 33/35 (94%)
Query: 750 EGTASVAIAGLLASLRITKTRLSDNTILFQGSGEG 784
           +GTASVA+AGLLA+LRITK RLSD+T+LFQG+GE 
Sbjct: 259 QGTASVAVAGLLAALRITKNRLSDHTVLFQGAGEA 293

>pdb|1GQ2|A Chain A, Malic Enzyme From Pigeon Liver Length = 555

Iteration: 1
 Score = 52.4 bits (124), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 21/33 (63%), Positives = 27/33 (81%)
Query: 816 EDRNERLFYRLLSEYVVELMPIVYTPTVGLACQ 848
           +DRNE+LFY++L+  +    PIVYTPTVGLACQ
Sbjct: 67  QDRNEKLFYKVLTSDIERFXPIVYTPTVGLACQ 99

>pdb|2AW5|A Chain A, Crystal Structure Of A Human Malic Enzyme Length = 575

Iteration: 1
 Score =  317 bits (812), Expect = 2e-86,   Method: Compositional matrix adjust.
 Identities = 143/212 (67%), Positives = 168/212 (79%)
Query: 507 VVELMPIVYTPTVGLACQKYGLIFRRPRGLFISIHDKGHISEVLRNWPETDIRAIVVTDG 566
           + + MPIVYTPTVGLACQ+Y L+FR+PRGLFI+IHD+GHI+ VL  WPE  I+AIVVTDG
Sbjct: 105 IEKFMPIVYTPTVGLACQQYSLVFRKPRGLFITIHDRGHIASVLNAWPEDVIKAIVVTDG 164
Query: 567 ERILGLGDLGAYGMGIPVGKLSLYTALAGIKPHQCLPITLDVGTNTQQLLDDPLYIGLRQ 626
           ERILGLGDLG  GMGIPVGKL+LYTA  G+ P +CLP+ LDVGT  ++LL DPLYIGLRQ
Sbjct: 165 ERILGLGDLGCNGMGIPVGKLALYTACGGMNPQECLPVILDVGTENEELLKDPLYIGLRQ 224
Query: 627 RRTTGQAYDDFIEEFMQAVVARYGQHVLIQFEDFANHSAFRFLDTYRNRYCVFNDDIQGT 686
           RR  G  YDDF++EFM+AV ++YG + LIQFEDFAN +AFR L+ YRN+YC FNDDIQGT
Sbjct: 225 RRVRGSEYDDFLDEFMEAVSSKYGMNCLIQFEDFANVNAFRLLNKYRNQYCTFNDDIQGT 284
Query: 687 XXXXXXXXXXXXRITKTRLSDNTILFQGAGEG 718
                       RITK +LSD TILFQGAGE 
Sbjct: 285 ASVAVAGLLAALRITKNKLSDQTILFQGAGEA 316

>pdb|2AW5|A Chain A, Crystal Structure Of A Human Malic Enzyme Length = 575

Iteration: 1
 Score = 58.2 bits (139), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 27/35 (77%), Positives = 32/35 (91%)
Query: 750 EGTASVAIAGLLASLRITKTRLSDNTILFQGSGEG 784
           +GTASVA+AGLLA+LRITK +LSD TILFQG+GE 
Sbjct: 282 QGTASVAVAGLLAALRITKNKLSDQTILFQGAGEA 316

>pdb|2AW5|A Chain A, Crystal Structure Of A Human Malic Enzyme Length = 575

Iteration: 1
 Score = 56.6 bits (135), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 23/33 (69%), Positives = 29/33 (87%)
Query: 816 EDRNERLFYRLLSEYVVELMPIVYTPTVGLACQ 848
           +DRNE+LFYR+L+  + + MPIVYTPTVGLACQ
Sbjct: 90  QDRNEKLFYRVLTSDIEKFMPIVYTPTVGLACQ 122

>pdb|1GZ3|A Chain A, Molecular Mechanism For The Regulation Of Human Mitochondrial Nad(P)+-Dependent Malic Enzyme By Atp And Fumarate Length = 554

Iteration: 1
 Score =  293 bits (750), Expect = 3e-79,   Method: Compositional matrix adjust.
 Identities = 132/215 (61%), Positives = 161/215 (74%)
Query: 504 QEYVVELMPIVYTPTVGLACQKYGLIFRRPRGLFISIHDKGHISEVLRNWPETDIRAIVV 563
           Q+ +  LMPIVYTPTVGLAC +YG IFRRP+GLFISI D+GH+  ++ NWPE  ++A+VV
Sbjct: 82  QDDIESLMPIVYTPTVGLACSQYGHIFRRPKGLFISISDRGHVRSIVDNWPENHVKAVVV 141
Query: 564 TDGERILGLGDLGAYGMGIPVGKLSLYTALAGIKPHQCLPITLDVGTNTQQLLDDPLYIG 623
           TDGERILGLGDLG YGMGIPVGKL LYTA AGI+P QCLP+ +DVGT+   LL DP Y+G
Sbjct: 142 TDGERILGLGDLGVYGMGIPVGKLCLYTACAGIRPDQCLPVCIDVGTDNIALLKDPFYMG 201
Query: 624 LRQRRTTGQAYDDFIEEFMQAVVARYGQHVLIQFEDFANHSAFRFLDTYRNRYCVFNDDI 683
           L Q+R   Q YDD I+EFM+A+  RYG++ LIQFEDF NH+AFRFL  YR +YC FNDDI
Sbjct: 202 LYQKRDRTQQYDDLIDEFMKAITDRYGRNTLIQFEDFGNHNAFRFLRKYREKYCTFNDDI 261
Query: 684 QGTXXXXXXXXXXXXRITKTRLSDNTILFQGAGEG 718
           QGT            ++    +S++ ILF GAGE 
Sbjct: 262 QGTAAVALAGLLAAQKVISKPISEHKILFLGAGEA 296

>pdb|1GZ3|A Chain A, Molecular Mechanism For The Regulation Of Human Mitochondrial Nad(P)+-Dependent Malic Enzyme By Atp And Fumarate Length = 554

Iteration: 1
 Score = 53.9 bits (128), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 22/32 (68%), Positives = 28/32 (87%)
Query: 816 EDRNERLFYRLLSEYVVELMPIVYTPTVGLAC 847
           ++RNE+LFYR+L + +  LMPIVYTPTVGLAC
Sbjct: 70  QERNEKLFYRILQDDIESLMPIVYTPTVGLAC 101

>pdb|1EFK|A Chain A, Structure Of Human Malic Enzyme In Complex With Ketomalonate Length = 584

Iteration: 1
 Score =  283 bits (723), Expect = 4e-76,   Method: Compositional matrix adjust.
 Identities = 128/215 (59%), Positives = 157/215 (73%)
Query: 504 QEYVVELMPIVYTPTVGLACQKYGLIFRRPRGLFISIHDKGHISEVLRNWPETDIRAIVV 563
           Q+ +  L PIVYTPTVGLAC +YG IFRRP+GLFISI D+GH+  ++ NWPE  ++A+VV
Sbjct: 101 QDDIESLXPIVYTPTVGLACSQYGHIFRRPKGLFISISDRGHVRSIVDNWPENHVKAVVV 160
Query: 564 TDGERILGLGDLGAYGMGIPVGKLSLYTALAGIKPHQCLPITLDVGTNTQQLLDDPLYIG 623
           TDGERILGLGDLG YG GIPVGKL LYTA AGI+P +CLP+ +DVGT+   LL DP Y G
Sbjct: 161 TDGERILGLGDLGVYGXGIPVGKLCLYTACAGIRPDRCLPVCIDVGTDNIALLKDPFYXG 220
Query: 624 LRQRRTTGQAYDDFIEEFMQAVVARYGQHVLIQFEDFANHSAFRFLDTYRNRYCVFNDDI 683
           L Q+R   Q YDD I+EF +A+  RYG++ LIQFEDF NH+AFRFL  YR +YC FNDDI
Sbjct: 221 LYQKRDRTQQYDDLIDEFXKAITDRYGRNTLIQFEDFGNHNAFRFLRKYREKYCTFNDDI 280
Query: 684 QGTXXXXXXXXXXXXRITKTRLSDNTILFQGAGEG 718
           QGT            ++    +S++ ILF GAGE 
Sbjct: 281 QGTAAVALAGLLAAQKVISKPISEHKILFLGAGEA 315

>pdb|1EFK|A Chain A, Structure Of Human Malic Enzyme In Complex With Ketomalonate Length = 584

Iteration: 1
 Score = 51.2 bits (121), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 21/32 (65%), Positives = 27/32 (84%)
Query: 816 EDRNERLFYRLLSEYVVELMPIVYTPTVGLAC 847
           ++RNE+LFYR+L + +  L PIVYTPTVGLAC
Sbjct: 89  QERNEKLFYRILQDDIESLXPIVYTPTVGLAC 120

>pdb|1QR6|A Chain A, Human Mitochondrial Nad(P)-Dependent Malic Enzyme Length = 584

Iteration: 1
 Score =  282 bits (722), Expect = 4e-76,   Method: Compositional matrix adjust.
 Identities = 128/215 (59%), Positives = 157/215 (73%)
Query: 504 QEYVVELMPIVYTPTVGLACQKYGLIFRRPRGLFISIHDKGHISEVLRNWPETDIRAIVV 563
           Q+ +  L PIVYTPTVGLAC +YG IFRRP+GLFISI D+GH+  ++ NWPE  ++A+VV
Sbjct: 101 QDDIESLXPIVYTPTVGLACSQYGHIFRRPKGLFISISDRGHVRSIVDNWPENHVKAVVV 160
Query: 564 TDGERILGLGDLGAYGMGIPVGKLSLYTALAGIKPHQCLPITLDVGTNTQQLLDDPLYIG 623
           TDGERILGLGDLG YG GIPVGKL LYTA AGI+P +CLP+ +DVGT+   LL DP Y G
Sbjct: 161 TDGERILGLGDLGVYGXGIPVGKLCLYTACAGIRPDRCLPVCIDVGTDNIALLKDPFYXG 220
Query: 624 LRQRRTTGQAYDDFIEEFMQAVVARYGQHVLIQFEDFANHSAFRFLDTYRNRYCVFNDDI 683
           L Q+R   Q YDD I+EF +A+  RYG++ LIQFEDF NH+AFRFL  YR +YC FNDDI
Sbjct: 221 LYQKRDRTQQYDDLIDEFXKAITDRYGRNTLIQFEDFGNHNAFRFLRKYREKYCTFNDDI 280
Query: 684 QGTXXXXXXXXXXXXRITKTRLSDNTILFQGAGEG 718
           QGT            ++    +S++ ILF GAGE 
Sbjct: 281 QGTAAVALAGLLAAQKVISKPISEHKILFLGAGEA 315

>pdb|1QR6|A Chain A, Human Mitochondrial Nad(P)-Dependent Malic Enzyme Length = 584

Iteration: 1
 Score = 51.2 bits (121), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 21/32 (65%), Positives = 27/32 (84%)
Query: 816 EDRNERLFYRLLSEYVVELMPIVYTPTVGLAC 847
           ++RNE+LFYR+L + +  L PIVYTPTVGLAC
Sbjct: 89  QERNEKLFYRILQDDIESLXPIVYTPTVGLAC 120

>pdb|1DO8|A Chain A, Crystal Structure Of A Closed Form Of Human Mitochondrial Nad(P)+-Dependent Malic Enzyme Length = 564

Iteration: 1
 Score =  282 bits (722), Expect = 4e-76,   Method: Compositional matrix adjust.
 Identities = 128/215 (59%), Positives = 157/215 (73%)
Query: 504 QEYVVELMPIVYTPTVGLACQKYGLIFRRPRGLFISIHDKGHISEVLRNWPETDIRAIVV 563
           Q+ +  L PIVYTPTVGLAC +YG IFRRP+GLFISI D+GH+  ++ NWPE  ++A+VV
Sbjct: 81  QDDIESLXPIVYTPTVGLACSQYGHIFRRPKGLFISISDRGHVRSIVDNWPENHVKAVVV 140
Query: 564 TDGERILGLGDLGAYGMGIPVGKLSLYTALAGIKPHQCLPITLDVGTNTQQLLDDPLYIG 623
           TDGERILGLGDLG YG GIPVGKL LYTA AGI+P +CLP+ +DVGT+   LL DP Y G
Sbjct: 141 TDGERILGLGDLGVYGXGIPVGKLCLYTACAGIRPDRCLPVCIDVGTDNIALLKDPFYXG 200
Query: 624 LRQRRTTGQAYDDFIEEFMQAVVARYGQHVLIQFEDFANHSAFRFLDTYRNRYCVFNDDI 683
           L Q+R   Q YDD I+EF +A+  RYG++ LIQFEDF NH+AFRFL  YR +YC FNDDI
Sbjct: 201 LYQKRDRTQQYDDLIDEFXKAITDRYGRNTLIQFEDFGNHNAFRFLRKYREKYCTFNDDI 260
Query: 684 QGTXXXXXXXXXXXXRITKTRLSDNTILFQGAGEG 718
           QGT            ++    +S++ ILF GAGE 
Sbjct: 261 QGTAAVALAGLLAAQKVISKPISEHKILFLGAGEA 295

>pdb|1DO8|A Chain A, Crystal Structure Of A Closed Form Of Human Mitochondrial Nad(P)+-Dependent Malic Enzyme Length = 564

Iteration: 1
 Score = 51.2 bits (121), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 21/32 (65%), Positives = 27/32 (84%)
Query: 816 EDRNERLFYRLLSEYVVELMPIVYTPTVGLAC 847
           ++RNE+LFYR+L + +  L PIVYTPTVGLAC
Sbjct: 69  QERNEKLFYRILQDDIESLXPIVYTPTVGLAC 100

>pdb|1GZ4|A Chain A, Molecular Mechanism Of The Regulation Of Human Mitochondrial Nad(P)+-Dependent Malic Enzyme By Atp And Fumarate Length = 551

Iteration: 1
 Score =  282 bits (721), Expect = 6e-76,   Method: Compositional matrix adjust.
 Identities = 128/215 (59%), Positives = 157/215 (73%)
Query: 504 QEYVVELMPIVYTPTVGLACQKYGLIFRRPRGLFISIHDKGHISEVLRNWPETDIRAIVV 563
           Q+ +  L PIVYTPTVGLAC +YG IFRRP+GLFISI D+GH+  ++ NWPE  ++A+VV
Sbjct: 79  QDDIESLXPIVYTPTVGLACSQYGHIFRRPKGLFISISDRGHVRSIVDNWPENHVKAVVV 138
Query: 564 TDGERILGLGDLGAYGMGIPVGKLSLYTALAGIKPHQCLPITLDVGTNTQQLLDDPLYIG 623
           TDGERILGLGDLG YG GIPVGKL LYTA AGI+P +CLP+ +DVGT+   LL DP Y G
Sbjct: 139 TDGERILGLGDLGVYGXGIPVGKLCLYTACAGIRPDRCLPVCIDVGTDNIALLKDPFYXG 198
Query: 624 LRQRRTTGQAYDDFIEEFMQAVVARYGQHVLIQFEDFANHSAFRFLDTYRNRYCVFNDDI 683
           L Q+R   Q YDD I+EF +A+  RYG++ LIQFEDF NH+AFRFL  YR +YC FNDDI
Sbjct: 199 LYQKRDRTQQYDDLIDEFXKAITDRYGRNTLIQFEDFGNHNAFRFLRKYREKYCTFNDDI 258
Query: 684 QGTXXXXXXXXXXXXRITKTRLSDNTILFQGAGEG 718
           QGT            ++    +S++ ILF GAGE 
Sbjct: 259 QGTAAVALAGLLAAQKVISKPISEHKILFLGAGEA 293

>pdb|1GZ4|A Chain A, Molecular Mechanism Of The Regulation Of Human Mitochondrial Nad(P)+-Dependent Malic Enzyme By Atp And Fumarate Length = 551

Iteration: 1
 Score = 51.2 bits (121), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 21/32 (65%), Positives = 27/32 (84%)
Query: 816 EDRNERLFYRLLSEYVVELMPIVYTPTVGLAC 847
           ++RNE+LFYR+L + +  L PIVYTPTVGLAC
Sbjct: 67  QERNEKLFYRILQDDIESLXPIVYTPTVGLAC 98

>pdb|1LLQ|A Chain A, Crystal Structure Of Malic Enzyme From Ascaris Suum Complexed With Nicotinamide Adenine Dinucleotide Length = 605

Iteration: 1
 Score =  274 bits (701), Expect = 1e-73,   Method: Compositional matrix adjust.
 Identities = 127/217 (58%), Positives = 159/217 (73%), Gaps = 2/217 (0%)
Query: 505 EYVVELMPIVYTPTVGLACQKYGLIFRRPRGLFISIHDKG--HISEVLRNWPETDIRAIV 562
           ++V ELMPIVYTPTVGLACQ +G I+R+P+GL+I+I+D     I ++L NW E D+RAIV
Sbjct: 116 DHVKELMPIVYTPTVGLACQNFGYIYRKPKGLYITINDNSVSKIYQILSNWHEEDVRAIV 175
Query: 563 VTDGERILGLGDLGAYGMGIPVGKLSLYTALAGIKPHQCLPITLDVGTNTQQLLDDPLYI 622
           VTDGERILGLGDLGAYG+GIPVGKL+LY AL G++P  CLP+ LDVGTN   LL+DP YI
Sbjct: 176 VTDGERILGLGDLGAYGIGIPVGKLALYVALGGVQPKWCLPVLLDVGTNNMDLLNDPFYI 235
Query: 623 GLRQRRTTGQAYDDFIEEFMQAVVARYGQHVLIQFEDFANHSAFRFLDTYRNRYCVFNDD 682
           GLR +R  G+ YD  ++ FM+A   +YGQ  LIQFEDFAN +AFR LD Y+++Y +FNDD
Sbjct: 236 GLRHKRVRGKDYDTLLDNFMKACTKKYGQKTLIQFEDFANPNAFRLLDKYQDKYTMFNDD 295
Query: 683 IQGTXXXXXXXXXXXXRITKTRLSDNTILFQGAGEGT 719
           IQGT            R+TK  +S    LF GAG  +
Sbjct: 296 IQGTASVIVAGLLTCTRVTKKLVSQEKYLFFGAGAAS 332

>pdb|1LLQ|A Chain A, Crystal Structure Of Malic Enzyme From Ascaris Suum Complexed With Nicotinamide Adenine Dinucleotide Length = 605

Iteration: 1
 Score = 60.8 bits (146), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 32/53 (60%), Positives = 39/53 (73%), Gaps = 3/53 (5%)
Query: 799 ITKTRLSDNTI--LFQGAG-EDRNERLFYRLLSEYVVELMPIVYTPTVGLACQ 848
           ITK R   N +    Q  G +DRNE+LFYR++ ++V ELMPIVYTPTVGLACQ
Sbjct: 83  ITKLREQPNDLARYIQLDGLQDRNEKLFYRVVCDHVKELMPIVYTPTVGLACQ 135

>pdb|2DVM|A Chain A, Nad Complex Structure Of Ph1275 Protein From Pyrococcus Horikoshii Length = 439

Iteration: 1
 Score = 51.2 bits (121), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 56/212 (26%), Positives = 84/212 (39%), Gaps = 52/212 (24%)
Query: 509 ELMPIVYTPTVGLACQKYGLIFRRPRGLFISIHDKGHISEVLRNWPETDIRAIVVTDGER 568
           E + + YTP V   C++   I R P G       KG++               VV+DG R
Sbjct: 32  EELTLAYTPGVAEPCKE---IARDP-GKVYEYTSKGNL-------------VAVVSDGSR 74
Query: 569 ILGLGDLGAYGMGIPV--GKLSLYTALAGIKPHQCLPITLDVGTNTQQLLDDPLYIGLRQ 626
           ILGLG++G    G+PV  GK  L+    G+      PI +                    
Sbjct: 75  ILGLGNIGPLA-GLPVMEGKALLFKRFGGV---DAFPIMI-------------------- 110
Query: 627 RRTTGQAYDDFIEEFMQAVVARYGQHVLIQFEDFANHSAFRFLDTYRNRY--CVFNDDIQ 684
                Q  + FI + ++A+   +G    I  ED A+   F  L+  R      VF+DD Q
Sbjct: 111 ---KEQEPNKFI-DIVKAIAPTFGG---INLEDIASPKCFYILERLREELDIPVFHDDQQ 163
Query: 685 GTXXXXXXXXXXXXRITKTRLSDNTILFQGAG 716
           GT            ++   ++S+ T+   GAG
Sbjct: 164 GTAAVVLAGLLNALKVVGKKISEITLALFGAG 195

>pdb|1WW8|A Chain A, Crystal Structure Of Malic Enzyme From Pyrococcus Horikoshii Ot3 Length = 439

Iteration: 1
 Score = 50.8 bits (120), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 56/212 (26%), Positives = 86/212 (40%), Gaps = 52/212 (24%)
Query: 509 ELMPIVYTPTVGLACQKYGLIFRRPRGLFISIHDKGHISEVLRNWPETDIRAIVVTDGER 568
           E + + YTP V   C++   I R P G       KG++               VV+DG R
Sbjct: 32  EELTLAYTPGVAEPCKE---IARDP-GKVYEYTSKGNL-------------VAVVSDGSR 74
Query: 569 ILGLGDLGAYGMGIPV--GKLSLYTALAGIKPHQCLPITLDVGTNTQQLLDDPLYIGLRQ 626
           ILGLG++G    G+PV  GK  L+    G+                     D   I +++
Sbjct: 75  ILGLGNIGPLA-GLPVXEGKALLFKRFGGV---------------------DAFPIXIKE 112
Query: 627 RRTTGQAYDDFIEEFMQAVVARYGQHVLIQFEDFANHSAFRFLDTYRNRY--CVFNDDIQ 684
                Q  + FI + ++A+   +G    I  ED A+   F  L+  R      VF+DD Q
Sbjct: 113 -----QEPNKFI-DIVKAIAPTFGG---INLEDIASPKCFYILERLREELDIPVFHDDQQ 163
Query: 685 GTXXXXXXXXXXXXRITKTRLSDNTILFQGAG 716
           GT            ++   ++S+ T+   GAG
Sbjct: 164 GTAAVVLAGLLNALKVVGKKISEITLALFGAG 195

>pdb|3NV9|A Chain A, Crystal Structure Of Entamoeba Histolytica Malic Enzyme Length = 487

Iteration: 1
 Score = 48.5 bits (114), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 44/159 (27%), Positives = 71/159 (44%), Gaps = 29/159 (18%)
Query: 562 VVTDGERILGLGDLGAYG-MGIPVGKLSLYTALAGIKPHQCLPITLDVGTNTQQLLDDPL 620
           VV+D  R+LG GD+   G +G+  GK  L   L GI     +PI +D  +  ++  +DP 
Sbjct: 95  VVSDSTRVLGDGDVTPPGGLGVMEGKALLMKYLGGI---DAVPICID--SKNKEGKNDP- 148
Query: 621 YIGLRQRRTTGQAYDDFIEEFMQAVVARYGQHVLIQFEDFANHSAFRFLDTYRNRYC--- 677
                          D + EF+Q +   +G    I  ED +  + ++ LD  R   C   
Sbjct: 149 ---------------DAVIEFVQRIQHTFGA---INLEDISQPNCYKILDVLRES-CDIP 189
Query: 678 VFNDDIQGTXXXXXXXXXXXXRITKTRLSDNTILFQGAG 716
           V++DD QGT            ++ K  + +  ++F GAG
Sbjct: 190 VWHDDQQGTASVTLAGLLNALKLVKKDIHECRMVFIGAG 228

>pdb|1VL6|A Chain A, Crystal Structure Of Nad-Dependent Malic Enzyme (Tm0542) From Thermotoga Maritima At 2.61 A Resolution Length = 388

Iteration: 1
 Score = 44.7 bits (104), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 40/159 (25%), Positives = 65/159 (40%), Gaps = 35/159 (22%)
Query: 562 VVTDGERILGLGDLGAYGMGIPV--GKLSLYTALAGIKPHQCLPITLDVGTNTQQLLDDP 619
           VV+DG  +LGLG++G YG  +PV  GK  L+ A A I      PI L             
Sbjct: 74  VVSDGSAVLGLGNIGPYG-ALPVXEGKAFLFKAFADI---DAFPICL------------- 116
Query: 620 LYIGLRQRRTTGQAYDDFIEEFMQAVVARYGQHVLIQFEDFANHSAFRFLD--TYRNRYC 677
                       ++ ++ I   ++++   +G    I  ED      FR L   +      
Sbjct: 117 -----------SESEEEKIISIVKSLEPSFGG---INLEDIGAPKCFRILQRLSEEXNIP 162
Query: 678 VFNDDIQGTXXXXXXXXXXXXRITKTRLSDNTILFQGAG 716
           VF+DD QGT            ++T+ ++ +  ++  G G
Sbjct: 163 VFHDDQQGTAVVVSAAFLNALKLTEKKIEEVKVVVNGIG 201

>pdb|2HAE|A Chain A, Crystal Structure Of A Putative Malic Enzyme (Malate Oxidoreductase) Length = 386

Iteration: 1
 Score = 44.3 bits (103), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 40/159 (25%), Positives = 65/159 (40%), Gaps = 35/159 (22%)
Query: 562 VVTDGERILGLGDLGAYGMGIPV--GKLSLYTALAGIKPHQCLPITLDVGTNTQQLLDDP 619
           VV+DG  +LGLG++G YG  +PV  GK  L+ A A I      PI L             
Sbjct: 64  VVSDGSAVLGLGNIGPYG-ALPVMEGKAFLFKAFADI---DAFPICL------------- 106
Query: 620 LYIGLRQRRTTGQAYDDFIEEFMQAVVARYGQHVLIQFEDFANHSAFRFLD--TYRNRYC 677
                       ++ ++ I   ++++   +G    I  ED      FR L   +      
Sbjct: 107 -----------SESEEEKIISIVKSLEPSFGG---INLEDIGAPKCFRILQRLSEEMNIP 152
Query: 678 VFNDDIQGTXXXXXXXXXXXXRITKTRLSDNTILFQGAG 716
           VF+DD QGT            ++T+ ++ +  ++  G G
Sbjct: 153 VFHDDQQGTAVVVSAAFLNALKLTEKKIEEVKVVVNGIG 191

>pdb|2A9F|A Chain A, Crystal Structure Of A Putative Malic Enzyme ((S)- Malate:nad+ Oxidoreductase (Decarboxylating)) Length = 398

Iteration: 1
 Score = 43.1 bits (100), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 39/159 (24%), Positives = 67/159 (42%), Gaps = 35/159 (22%)
Query: 562 VVTDGERILGLGDLGA-YGMGIPVGKLSLYTALAGIKPHQCLPITLDVGTNTQQLLDDPL 620
           V++DG  +LGLGD+G    M +  GK +L+ A AG+     +PI LD   +T++++    
Sbjct: 70  VISDGTAVLGLGDIGPEAAMPVMEGKAALFKAFAGV---DAIPIVLDT-KDTEEII---- 121
Query: 621 YIGLRQRRTTGQAYDDFIEEFMQAVVARYGQHVLIQFEDFANHSAFRFLDTYRNRYC--- 677
                                ++A+   +G    I  ED +    F  ++    + C   
Sbjct: 122 -------------------SIVKALAPTFGG---INLEDISAPRCFE-IEQRLIKECHIP 158
Query: 678 VFNDDIQGTXXXXXXXXXXXXRITKTRLSDNTILFQGAG 716
           VF+DD  GT            ++ K  L + +I+  G G
Sbjct: 159 VFHDDQHGTAIVVLAAIFNSLKLLKKSLDEVSIVVNGGG 197

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	848
1pj3_A	564	NAD-dependent malic enzyme, mitochondrial; oxidati	1e-128
1pj3_A	564	NAD-dependent malic enzyme, mitochondrial; oxidati	1e-30
1pj3_A	564	NAD-dependent malic enzyme, mitochondrial; oxidati	2e-29
1pj3_A	564	NAD-dependent malic enzyme, mitochondrial; oxidati	2e-28
1pj3_A	564	NAD-dependent malic enzyme, mitochondrial; oxidati	2e-27
1pj3_A	564	NAD-dependent malic enzyme, mitochondrial; oxidati	4e-22
1pj3_A	564	NAD-dependent malic enzyme, mitochondrial; oxidati	2e-15
1pj3_A	564	NAD-dependent malic enzyme, mitochondrial; oxidati	7e-13
1pj3_A	564	NAD-dependent malic enzyme, mitochondrial; oxidati	1e-05
1pj3_A	564	NAD-dependent malic enzyme, mitochondrial; oxidati	1e-05
1gq2_A	555	Malic enzyme; oxidoreductase, pigeon liver, NADP-d	1e-127
1gq2_A	555	Malic enzyme; oxidoreductase, pigeon liver, NADP-d	5e-33
1gq2_A	555	Malic enzyme; oxidoreductase, pigeon liver, NADP-d	6e-30
1gq2_A	555	Malic enzyme; oxidoreductase, pigeon liver, NADP-d	1e-29
1gq2_A	555	Malic enzyme; oxidoreductase, pigeon liver, NADP-d	2e-29
1gq2_A	555	Malic enzyme; oxidoreductase, pigeon liver, NADP-d	1e-24
1gq2_A	555	Malic enzyme; oxidoreductase, pigeon liver, NADP-d	7e-16
1gq2_A	555	Malic enzyme; oxidoreductase, pigeon liver, NADP-d	1e-12
1gq2_A	555	Malic enzyme; oxidoreductase, pigeon liver, NADP-d	8e-06
1gq2_A	555	Malic enzyme; oxidoreductase, pigeon liver, NADP-d	1e-05
1o0s_A	605	NAD-ME, NAD-dependent malic enzyme; oxidoreductase	1e-123
1o0s_A	605	NAD-ME, NAD-dependent malic enzyme; oxidoreductase	1e-34
1o0s_A	605	NAD-ME, NAD-dependent malic enzyme; oxidoreductase	4e-31
1o0s_A	605	NAD-ME, NAD-dependent malic enzyme; oxidoreductase	6e-30
1o0s_A	605	NAD-ME, NAD-dependent malic enzyme; oxidoreductase	3e-27
1o0s_A	605	NAD-ME, NAD-dependent malic enzyme; oxidoreductase	3e-22
1o0s_A	605	NAD-ME, NAD-dependent malic enzyme; oxidoreductase	4e-11
1o0s_A	605	NAD-ME, NAD-dependent malic enzyme; oxidoreductase	3e-05
1o0s_A	605	NAD-ME, NAD-dependent malic enzyme; oxidoreductase	5e-05
3nv9_A	487	Malic enzyme; rossmann fold, oxidoreductase; 2.25A	1e-13
3nv9_A	487	Malic enzyme; rossmann fold, oxidoreductase; 2.25A	9e-07
3nv9_A	487	Malic enzyme; rossmann fold, oxidoreductase; 2.25A	2e-05
3nv9_A	487	Malic enzyme; rossmann fold, oxidoreductase; 2.25A	8e-04
2a9f_A	398	Putative malic enzyme ((S)-malate:NAD+ oxidoreduct	1e-10
2a9f_A	398	Putative malic enzyme ((S)-malate:NAD+ oxidoreduct	3e-07
2a9f_A	398	Putative malic enzyme ((S)-malate:NAD+ oxidoreduct	6e-06
2a9f_A	398	Putative malic enzyme ((S)-malate:NAD+ oxidoreduct	7e-04
2dvm_A	439	Malic enzyme, 439AA long hypothetical malate oxido	1e-10
2dvm_A	439	Malic enzyme, 439AA long hypothetical malate oxido	7e-05
1vl6_A	388	Malate oxidoreductase; TM0542, NAD-dependent malic	4e-10
1vl6_A	388	Malate oxidoreductase; TM0542, NAD-dependent malic	6e-09
1vl6_A	388	Malate oxidoreductase; TM0542, NAD-dependent malic	1e-07
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	1e-09
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	4e-05

>1pj3_A NAD-dependent malic enzyme, mitochondrial; oxidative decarboxylase, oxidoreductase; HET: NAD; 2.10A {Homo sapiens} SCOP: c.2.1.7 c.58.1.3 PDB: 1pj2_A* 1do8_A* 1pj4_A* 1qr6_A* 1efl_A* 1pjl_A* 1efk_A* 1gz4_A* 1gz3_A* Length = 564

 Score =  394 bits (1015), Expect = e-128
 Identities = 141/227 (62%), Positives = 178/227 (78%), Gaps = 2/227 (0%)

Query: 504 QEYVVELMPIVYTPTVGLACQKYGLIFRRPRGLFISIHDKGHISEVLRNWPETDIRAIVV 563
           Q+ +  LMPIVYTPTVGLAC +YG IFRRP+GLFISI D+GH+  ++ NWPE  ++A+VV
Sbjct: 81  QDDIESLMPIVYTPTVGLACSQYGHIFRRPKGLFISISDRGHVRSIVDNWPENHVKAVVV 140

Query: 564 TDGERILGLGDLGAYGMGIPVGKLSLYTALAGIKPHQCLPITLDVGTNTQQLLDDPLYIG 623
           TDGERILGLGDLG YGMGIPVGKL LYTA AGI+P +CLP+ +DVGT+   LL DP Y+G
Sbjct: 141 TDGERILGLGDLGVYGMGIPVGKLCLYTACAGIRPDRCLPVCIDVGTDNIALLKDPFYMG 200

Query: 624 LRQRRTTGQAYDDFIEEFMQAVVARYGQHVLIQFEDFANHSAFRFLDTYRNRYCVFNDDI 683
           L Q+R   Q YDD I+EFM+A+  RYG++ LIQFEDF NH+AFRFL  YR +YC FNDDI
Sbjct: 201 LYQKRDRTQQYDDLIDEFMKAITDRYGRNTLIQFEDFGNHNAFRFLRKYREKYCTFNDDI 260

Query: 684 QGTASVAVAGLLASLRITKTRLSDNTILFQGAGEGTASVAVAGLLAS 730
           QGTA+VA+AGLLA+ ++    +S++ ILF GA  G A++ +A L+  
Sbjct: 261 QGTAAVALAGLLAAQKVISKPISEHKILFLGA--GEAALGIANLIVM 305

>1pj3_A NAD-dependent malic enzyme, mitochondrial; oxidative decarboxylase, oxidoreductase; HET: NAD; 2.10A {Homo sapiens} SCOP: c.2.1.7 c.58.1.3 PDB: 1pj2_A* 1do8_A* 1pj4_A* 1qr6_A* 1efl_A* 1pjl_A* 1efk_A* 1gz4_A* 1gz3_A* Length = 564

 Score =  126 bits (319), Expect = 1e-30
 Identities = 42/108 (38%), Positives = 63/108 (58%), Gaps = 7/108 (6%)

Query: 1   LLASLRITKTRLSDNTILFQGAGEASLGIADLCVMAMQKEGTSEQDARDKIWMVDSKGLI 60
           LLA+ ++    +S++ ILF GAGEA+LGIA+L VM+M + G SEQ+A+ KIWM D  GL+
Sbjct: 271 LLAAQKVISKPISEHKILFLGAGEAALGIANLIVMSMVENGLSEQEAQKKIWMFDKYGLL 330

Query: 61  VKDRPEGGVTGHKVHYAKKHA--PVKNLADVVKTVKPSILIEELKGLS 106
           VK R    +  ++  +             D V  +KPS +I    G++
Sbjct: 331 VKGRK-AKIDSYQEPFTHSAPESIPDTFEDAVNILKPSTII----GVA 373

>1pj3_A NAD-dependent malic enzyme, mitochondrial; oxidative decarboxylase, oxidoreductase; HET: NAD; 2.10A {Homo sapiens} SCOP: c.2.1.7 c.58.1.3 PDB: 1pj2_A* 1do8_A* 1pj4_A* 1qr6_A* 1efl_A* 1pjl_A* 1efk_A* 1gz4_A* 1gz3_A* Length = 564

 Score =  123 bits (310), Expect = 2e-29
 Identities = 41/55 (74%), Positives = 49/55 (89%)

Query: 375 DIRAIVVTDGERILGLGDLGAYGMGIPVGKLSLYTALAGIKPHQCLPITLDVGTN 429
            ++A+VVTDGERILGLGDLG YGMGIPVGKL LYTA AGI+P +CLP+ +DVGT+
Sbjct: 134 HVKAVVVTDGERILGLGDLGVYGMGIPVGKLCLYTACAGIRPDRCLPVCIDVGTD 188

>1pj3_A NAD-dependent malic enzyme, mitochondrial; oxidative decarboxylase, oxidoreductase; HET: NAD; 2.10A {Homo sapiens} SCOP: c.2.1.7 c.58.1.3 PDB: 1pj2_A* 1do8_A* 1pj4_A* 1qr6_A* 1efl_A* 1pjl_A* 1efk_A* 1gz4_A* 1gz3_A* Length = 564

 Score =  120 bits (302), Expect = 2e-28
 Identities = 43/73 (58%), Positives = 57/73 (78%), Gaps = 1/73 (1%)

Query: 433 AAAIPQVFTADILKDMAAFNKRPIIFALSNPTSKAECTAEQAYVNTDGRGVFASGSPFDP 492
            A   ++FT D+++ MA+ N+RP+IFALSNPT++AECTAE+AY  T+GR +FASGSPF P
Sbjct: 372 VAGAGRLFTPDVIRAMASINERPVIFALSNPTAQAECTAEEAYTLTEGRCLFASGSPFGP 431

Query: 493 VTYK-GKTFTPGQ 504
           V    G+ FTPGQ
Sbjct: 432 VKLTDGRVFTPGQ 444

>1pj3_A NAD-dependent malic enzyme, mitochondrial; oxidative decarboxylase, oxidoreductase; HET: NAD; 2.10A {Homo sapiens} SCOP: c.2.1.7 c.58.1.3 PDB: 1pj2_A* 1do8_A* 1pj4_A* 1qr6_A* 1efl_A* 1pjl_A* 1efk_A* 1gz4_A* 1gz3_A* Length = 564

 Score =  117 bits (294), Expect = 2e-27
 Identities = 39/96 (40%), Positives = 57/96 (59%), Gaps = 3/96 (3%)

Query: 224 VAGLLASLRITKTRLSDNTILFQGAGEASLGIADLCVMAMQKEGTSEQDARDKIWMVDSK 283
           +AGLLA+ ++    +S++ ILF GAGEA+LGIA+L VM+M + G SEQ+A+ KIWM D  
Sbjct: 268 LAGLLAAQKVISKPISEHKILFLGAGEAALGIANLIVMSMVENGLSEQEAQKKIWMFDKY 327

Query: 284 GLIVKDRPEGGVTGHKVHYAKKHA--PVKNLADVVK 317
           GL+VK R    +  ++  +             D V 
Sbjct: 328 GLLVKGRK-AKIDSYQEPFTHSAPESIPDTFEDAVN 362

>1pj3_A NAD-dependent malic enzyme, mitochondrial; oxidative decarboxylase, oxidoreductase; HET: NAD; 2.10A {Homo sapiens} SCOP: c.2.1.7 c.58.1.3 PDB: 1pj2_A* 1do8_A* 1pj4_A* 1qr6_A* 1efl_A* 1pjl_A* 1efk_A* 1gz4_A* 1gz3_A* Length = 564

 Score =  100 bits (250), Expect = 4e-22
 Identities = 31/80 (38%), Positives = 45/80 (56%), Gaps = 3/80 (3%)

Query: 142 ASLGIADLCVMAMQKEGTSEQDARDKIWMVDSKGLIVKDRPEGGVTGHKVHYAKKHA--P 199
           A+LGIA+L VM+M + G SEQ+A+ KIWM D  GL+VK R    +  ++  +        
Sbjct: 295 AALGIANLIVMSMVENGLSEQEAQKKIWMFDKYGLLVKGRK-AKIDSYQEPFTHSAPESI 353

Query: 200 VKNLADVVKTVKPSILIGES 219
                D V  +KPS +IG +
Sbjct: 354 PDTFEDAVNILKPSTIIGVA 373

>1pj3_A NAD-dependent malic enzyme, mitochondrial; oxidative decarboxylase, oxidoreductase; HET: NAD; 2.10A {Homo sapiens} SCOP: c.2.1.7 c.58.1.3 PDB: 1pj2_A* 1do8_A* 1pj4_A* 1qr6_A* 1efl_A* 1pjl_A* 1efk_A* 1gz4_A* 1gz3_A* Length = 564

 Score = 79.0 bits (195), Expect = 2e-15
 Identities = 23/52 (44%), Positives = 34/52 (65%)

Query: 319 GMAFSIEERQALGIHGLLPAAVKSQDEQLHLCKLNVDRYEDPLNKYIYLQAL 370
           GMAF+++ERQ LG+ GLLP  +++QD Q      N+ +   PL KYIY+  +
Sbjct: 17  GMAFTLQERQMLGLQGLLPPKIETQDIQALRFHRNLKKMTSPLEKYIYIMGI 68

>1pj3_A NAD-dependent malic enzyme, mitochondrial; oxidative decarboxylase, oxidoreductase; HET: NAD; 2.10A {Homo sapiens} SCOP: c.2.1.7 c.58.1.3 PDB: 1pj2_A* 1do8_A* 1pj4_A* 1qr6_A* 1efl_A* 1pjl_A* 1efk_A* 1gz4_A* 1gz3_A* Length = 564

 Score = 70.9 bits (174), Expect = 7e-13
 Identities = 24/59 (40%), Positives = 34/59 (57%), Gaps = 2/59 (3%)

Query: 790 VAGVLASLRITKTRLSDNTILFQGAGEDRNERLFYRLLSEYVVELMPIVYTPTVGLACQ 848
                 +L+   + L     +     ++RNE+LFYR+L + +  LMPIVYTPTVGLAC 
Sbjct: 45  ALRFHRNLKKMTSPLEKYIYI--MGIQERNEKLFYRILQDDIESLMPIVYTPTVGLACS 101

>1pj3_A NAD-dependent malic enzyme, mitochondrial; oxidative decarboxylase, oxidoreductase; HET: NAD; 2.10A {Homo sapiens} SCOP: c.2.1.7 c.58.1.3 PDB: 1pj2_A* 1do8_A* 1pj4_A* 1qr6_A* 1efl_A* 1pjl_A* 1efk_A* 1gz4_A* 1gz3_A* Length = 564

 Score = 47.8 bits (114), Expect = 1e-05
 Identities = 19/60 (31%), Positives = 36/60 (60%), Gaps = 2/60 (3%)

Query: 737 RLSDNTILFQGAGEGTASVAIAGLLASLRITKTRLSDNTILFQGSGEGTASVAVAGVLAS 796
           +  +    F    +GTA+VA+AGLLA+ ++    +S++ ILF G+  G A++ +A ++  
Sbjct: 248 KYREKYCTFNDDIQGTAAVALAGLLAAQKVISKPISEHKILFLGA--GEAALGIANLIVM 305

>1pj3_A NAD-dependent malic enzyme, mitochondrial; oxidative decarboxylase, oxidoreductase; HET: NAD; 2.10A {Homo sapiens} SCOP: c.2.1.7 c.58.1.3 PDB: 1pj2_A* 1do8_A* 1pj4_A* 1qr6_A* 1efl_A* 1pjl_A* 1efk_A* 1gz4_A* 1gz3_A* Length = 564

 Score = 47.8 bits (114), Expect = 1e-05
 Identities = 18/47 (38%), Positives = 30/47 (63%)

Query: 770 RLSDNTILFQGSGEGTASVAVAGVLASLRITKTRLSDNTILFQGAGE 816
           +  +    F    +GTA+VA+AG+LA+ ++    +S++ ILF GAGE
Sbjct: 248 KYREKYCTFNDDIQGTAAVALAGLLAAQKVISKPISEHKILFLGAGE 294

>1gq2_A Malic enzyme; oxidoreductase, pigeon liver, NADP-dependent, NAD-NADP selectivity, decarboxylase, malate, Mn2+; HET: NAP; 2.5A {Columba livia} SCOP: c.2.1.7 c.58.1.3 PDB: 2aw5_A Length = 555

 Score =  393 bits (1011), Expect = e-127
 Identities = 161/227 (70%), Positives = 190/227 (83%), Gaps = 2/227 (0%)

Query: 504 QEYVVELMPIVYTPTVGLACQKYGLIFRRPRGLFISIHDKGHISEVLRNWPETDIRAIVV 563
              +   MPIVYTPTVGLACQ YGL FRRPRGLFI+IHD+GHI+ +L++WPE+ I+AIVV
Sbjct: 79  TSDIERFMPIVYTPTVGLACQHYGLAFRRPRGLFITIHDRGHIATMLQSWPESVIKAIVV 138

Query: 564 TDGERILGLGDLGAYGMGIPVGKLSLYTALAGIKPHQCLPITLDVGTNTQQLLDDPLYIG 623
           TDGERILGLGDLG YGMGIPVGKL+LYTA  G+KPHQCLP+ LDVGT+ + LL DPLYIG
Sbjct: 139 TDGERILGLGDLGCYGMGIPVGKLALYTACGGVKPHQCLPVMLDVGTDNETLLKDPLYIG 198

Query: 624 LRQRRTTGQAYDDFIEEFMQAVVARYGQHVLIQFEDFANHSAFRFLDTYRNRYCVFNDDI 683
           LR +R  GQAYDD ++EFM+AV +RYG + LIQFEDFAN +AFR L  YRN+YC FNDDI
Sbjct: 199 LRHKRIRGQAYDDLLDEFMEAVTSRYGMNCLIQFEDFANANAFRLLHKYRNKYCTFNDDI 258

Query: 684 QGTASVAVAGLLASLRITKTRLSDNTILFQGAGEGTASVAVAGLLAS 730
           QGTASVAVAGLLA+LRITK RLSD+T+LFQGA  G A++ +A L+  
Sbjct: 259 QGTASVAVAGLLAALRITKNRLSDHTVLFQGA--GEAALGIANLIVM 303

>1gq2_A Malic enzyme; oxidoreductase, pigeon liver, NADP-dependent, NAD-NADP selectivity, decarboxylase, malate, Mn2+; HET: NAP; 2.5A {Columba livia} SCOP: c.2.1.7 c.58.1.3 PDB: 2aw5_A Length = 555

 Score =  134 bits (338), Expect = 5e-33
 Identities = 65/106 (61%), Positives = 84/106 (79%), Gaps = 6/106 (5%)

Query: 1   LLASLRITKTRLSDNTILFQGAGEASLGIADLCVMAMQKEGTSEQDARDKIWMVDSKGLI 60
           LLA+LRITK RLSD+T+LFQGAGEA+LGIA+L VMAMQKEG S+++A  +IWMVDSKGLI
Sbjct: 269 LLAALRITKNRLSDHTVLFQGAGEAALGIANLIVMAMQKEGVSKEEAIKRIWMVDSKGLI 328

Query: 61  VKDRPEGGVTGHKVHYAKKHAPVKNLADVVKTVKPSILIEELKGLS 106
           VK R    +T  K H+A +H  +KNL D+VK +KP++LI    G++
Sbjct: 329 VKGRA--SLTPEKEHFAHEHCEMKNLEDIVKDIKPTVLI----GVA 368

>1gq2_A Malic enzyme; oxidoreductase, pigeon liver, NADP-dependent, NAD-NADP selectivity, decarboxylase, malate, Mn2+; HET: NAP; 2.5A {Columba livia} SCOP: c.2.1.7 c.58.1.3 PDB: 2aw5_A Length = 555

 Score =  124 bits (313), Expect = 6e-30
 Identities = 63/94 (67%), Positives = 77/94 (81%), Gaps = 2/94 (2%)

Query: 224 VAGLLASLRITKTRLSDNTILFQGAGEASLGIADLCVMAMQKEGTSEQDARDKIWMVDSK 283
           VAGLLA+LRITK RLSD+T+LFQGAGEA+LGIA+L VMAMQKEG S+++A  +IWMVDSK
Sbjct: 266 VAGLLAALRITKNRLSDHTVLFQGAGEAALGIANLIVMAMQKEGVSKEEAIKRIWMVDSK 325

Query: 284 GLIVKDRPEGGVTGHKVHYAKKHAPVKNLADVVK 317
           GLIVK R    +T  K H+A +H  +KNL D+VK
Sbjct: 326 GLIVKGRA--SLTPEKEHFAHEHCEMKNLEDIVK 357

>1gq2_A Malic enzyme; oxidoreductase, pigeon liver, NADP-dependent, NAD-NADP selectivity, decarboxylase, malate, Mn2+; HET: NAP; 2.5A {Columba livia} SCOP: c.2.1.7 c.58.1.3 PDB: 2aw5_A Length = 555

 Score =  124 bits (312), Expect = 1e-29
 Identities = 61/100 (61%), Positives = 69/100 (69%), Gaps = 12/100 (12%)

Query: 406 SLYTALAGIKPHQCLPITLDVGTNWRRAAAIPQVFTADILKDMAAFNKRPIIFALSNPTS 465
           +L   +  IKP      T+ +G      AAI   FT  IL+DMAAFNKRPIIFALSNPTS
Sbjct: 351 NLEDIVKDIKP------TVLIGV-----AAIGGAFTQQILQDMAAFNKRPIIFALSNPTS 399

Query: 466 KAECTAEQAYVNTDGRGVFASGSPFDPVTY-KGKTFTPGQ 504
           KAECTAEQ Y  T+GRG+FASGSPFDPVT   G+T  PGQ
Sbjct: 400 KAECTAEQLYKYTEGRGIFASGSPFDPVTLPSGQTLYPGQ 439

>1gq2_A Malic enzyme; oxidoreductase, pigeon liver, NADP-dependent, NAD-NADP selectivity, decarboxylase, malate, Mn2+; HET: NAP; 2.5A {Columba livia} SCOP: c.2.1.7 c.58.1.3 PDB: 2aw5_A Length = 555

 Score =  123 bits (310), Expect = 2e-29
 Identities = 45/55 (81%), Positives = 50/55 (90%)

Query: 375 DIRAIVVTDGERILGLGDLGAYGMGIPVGKLSLYTALAGIKPHQCLPITLDVGTN 429
            I+AIVVTDGERILGLGDLG YGMGIPVGKL+LYTA  G+KPHQCLP+ LDVGT+
Sbjct: 132 VIKAIVVTDGERILGLGDLGCYGMGIPVGKLALYTACGGVKPHQCLPVMLDVGTD 186

>1gq2_A Malic enzyme; oxidoreductase, pigeon liver, NADP-dependent, NAD-NADP selectivity, decarboxylase, malate, Mn2+; HET: NAP; 2.5A {Columba livia} SCOP: c.2.1.7 c.58.1.3 PDB: 2aw5_A Length = 555

 Score =  108 bits (271), Expect = 1e-24
 Identities = 45/78 (57%), Positives = 60/78 (76%), Gaps = 2/78 (2%)

Query: 142 ASLGIADLCVMAMQKEGTSEQDARDKIWMVDSKGLIVKDRPEGGVTGHKVHYAKKHAPVK 201
           A+LGIA+L VMAMQKEG S+++A  +IWMVDSKGLIVK R    +T  K H+A +H  +K
Sbjct: 293 AALGIANLIVMAMQKEGVSKEEAIKRIWMVDSKGLIVKGRA--SLTPEKEHFAHEHCEMK 350

Query: 202 NLADVVKTVKPSILIGES 219
           NL D+VK +KP++LIG +
Sbjct: 351 NLEDIVKDIKPTVLIGVA 368

>1gq2_A Malic enzyme; oxidoreductase, pigeon liver, NADP-dependent, NAD-NADP selectivity, decarboxylase, malate, Mn2+; HET: NAP; 2.5A {Columba livia} SCOP: c.2.1.7 c.58.1.3 PDB: 2aw5_A Length = 555

 Score = 80.9 bits (200), Expect = 7e-16
 Identities = 25/52 (48%), Positives = 33/52 (63%)

Query: 319 GMAFSIEERQALGIHGLLPAAVKSQDEQLHLCKLNVDRYEDPLNKYIYLQAL 370
           GMAF++EERQ L IHGLLP     QD Q++    N +R    L++YI L +L
Sbjct: 15  GMAFTLEERQQLNIHGLLPPCFLGQDAQVYSILKNFERLTSDLDRYILLMSL 66

>1gq2_A Malic enzyme; oxidoreductase, pigeon liver, NADP-dependent, NAD-NADP selectivity, decarboxylase, malate, Mn2+; HET: NAP; 2.5A {Columba livia} SCOP: c.2.1.7 c.58.1.3 PDB: 2aw5_A Length = 555

 Score = 70.5 bits (173), Expect = 1e-12
 Identities = 22/32 (68%), Positives = 27/32 (84%)

Query: 817 DRNERLFYRLLSEYVVELMPIVYTPTVGLACQ 848
           DRNE+LFY++L+  +   MPIVYTPTVGLACQ
Sbjct: 68  DRNEKLFYKVLTSDIERFMPIVYTPTVGLACQ 99

>1gq2_A Malic enzyme; oxidoreductase, pigeon liver, NADP-dependent, NAD-NADP selectivity, decarboxylase, malate, Mn2+; HET: NAP; 2.5A {Columba livia} SCOP: c.2.1.7 c.58.1.3 PDB: 2aw5_A Length = 555

 Score = 48.1 bits (115), Expect = 8e-06
 Identities = 29/60 (48%), Positives = 42/60 (70%), Gaps = 2/60 (3%)

Query: 737 RLSDNTILFQGAGEGTASVAIAGLLASLRITKTRLSDNTILFQGSGEGTASVAVAGVLAS 796
           +  +    F    +GTASVA+AGLLA+LRITK RLSD+T+LFQG+  G A++ +A ++  
Sbjct: 246 KYRNKYCTFNDDIQGTASVAVAGLLAALRITKNRLSDHTVLFQGA--GEAALGIANLIVM 303

>1gq2_A Malic enzyme; oxidoreductase, pigeon liver, NADP-dependent, NAD-NADP selectivity, decarboxylase, malate, Mn2+; HET: NAP; 2.5A {Columba livia} SCOP: c.2.1.7 c.58.1.3 PDB: 2aw5_A Length = 555

 Score = 47.3 bits (113), Expect = 1e-05
 Identities = 29/47 (61%), Positives = 36/47 (76%)

Query: 770 RLSDNTILFQGSGEGTASVAVAGVLASLRITKTRLSDNTILFQGAGE 816
           +  +    F    +GTASVAVAG+LA+LRITK RLSD+T+LFQGAGE
Sbjct: 246 KYRNKYCTFNDDIQGTASVAVAGLLAALRITKNRLSDHTVLFQGAGE 292

>1o0s_A NAD-ME, NAD-dependent malic enzyme; oxidoreductase, oxidative decarboxylase, rossmann fold, MAla dehydrogenase; HET: NAI; 2.00A {Ascaris suum} SCOP: c.2.1.7 c.58.1.3 PDB: 1llq_A* Length = 605

 Score =  383 bits (985), Expect = e-123
 Identities = 138/229 (60%), Positives = 172/229 (75%), Gaps = 4/229 (1%)

Query: 504 QEYVVELMPIVYTPTVGLACQKYGLIFRRPRGLFISIHDKG--HISEVLRNWPETDIRAI 561
            ++V ELMPIVYTPTVGLACQ +G I+R+P+GL+I+I+D     I ++L NW E D+RAI
Sbjct: 115 CDHVKELMPIVYTPTVGLACQNFGYIYRKPKGLYITINDNSVSKIYQILSNWHEEDVRAI 174

Query: 562 VVTDGERILGLGDLGAYGMGIPVGKLSLYTALAGIKPHQCLPITLDVGTNTQQLLDDPLY 621
           VVTDGERILGLGDLGAYG+GIPVGKL+LY AL G++P  CLP+ LDVGTN   LL+DP Y
Sbjct: 175 VVTDGERILGLGDLGAYGIGIPVGKLALYVALGGVQPKWCLPVLLDVGTNNMDLLNDPFY 234

Query: 622 IGLRQRRTTGQAYDDFIEEFMQAVVARYGQHVLIQFEDFANHSAFRFLDTYRNRYCVFND 681
           IGLR +R  G+ YD  ++ FM+A   +YGQ  LIQFEDFAN +AFR LD Y+++Y +FND
Sbjct: 235 IGLRHKRVRGKDYDTLLDNFMKACTKKYGQKTLIQFEDFANPNAFRLLDKYQDKYTMFND 294

Query: 682 DIQGTASVAVAGLLASLRITKTRLSDNTILFQGAGEGTASVAVAGLLAS 730
           DIQGTASV VAGLL   R+TK  +S    LF GA  G AS  +A ++  
Sbjct: 295 DIQGTASVIVAGLLTCTRVTKKLVSQEKYLFFGA--GAASTGIAEMIVH 341

>1o0s_A NAD-ME, NAD-dependent malic enzyme; oxidoreductase, oxidative decarboxylase, rossmann fold, MAla dehydrogenase; HET: NAI; 2.00A {Ascaris suum} SCOP: c.2.1.7 c.58.1.3 PDB: 1llq_A* Length = 605

 Score =  139 bits (352), Expect = 1e-34
 Identities = 65/174 (37%), Positives = 82/174 (47%), Gaps = 63/174 (36%)

Query: 319 GMAFSIEERQALGIHGLLPA------------------------------AVKSQDEQLH 348
           GM FS+ ERQ LG+HGLLP                                ++ ++E+L 
Sbjct: 51  GMGFSLYERQYLGLHGLLPPAFMTQEQQAYRVITKLREQPNDLARYIQLDGLQDRNEKLF 110

Query: 349 ----------------------LCKLNVDRYEDPLNKYIYLQ-----------ALAVKTD 375
                                  C+     Y  P   YI +            +   + D
Sbjct: 111 YRVVCDHVKELMPIVYTPTVGLACQNFGYIYRKPKGLYITINDNSVSKIYQILSNWHEED 170

Query: 376 IRAIVVTDGERILGLGDLGAYGMGIPVGKLSLYTALAGIKPHQCLPITLDVGTN 429
           +RAIVVTDGERILGLGDLGAYG+GIPVGKL+LY AL G++P  CLP+ LDVGTN
Sbjct: 171 VRAIVVTDGERILGLGDLGAYGIGIPVGKLALYVALGGVQPKWCLPVLLDVGTN 224

>1o0s_A NAD-ME, NAD-dependent malic enzyme; oxidoreductase, oxidative decarboxylase, rossmann fold, MAla dehydrogenase; HET: NAI; 2.00A {Ascaris suum} SCOP: c.2.1.7 c.58.1.3 PDB: 1llq_A* Length = 605

 Score =  128 bits (324), Expect = 4e-31
 Identities = 41/99 (41%), Positives = 57/99 (57%), Gaps = 11/99 (11%)

Query: 406 SLYTALAGIKPHQCLPITLDVGTNWRRAAAIPQVFTADILKDMAAFNKRPIIFALSNPTS 465
           S+   +   +P         +G      + +   F  ++++ MA  N+RPIIFALSNPTS
Sbjct: 389 SILEVIRAARP------GALIGA-----STVRGAFNEEVIRAMAEINERPIIFALSNPTS 437

Query: 466 KAECTAEQAYVNTDGRGVFASGSPFDPVTYKGKTFTPGQ 504
           KAECTAE+AY  T+G  ++ASGSPF      G T+ PGQ
Sbjct: 438 KAECTAEEAYTFTNGAALYASGSPFPNFELNGHTYKPGQ 476

>1o0s_A NAD-ME, NAD-dependent malic enzyme; oxidoreductase, oxidative decarboxylase, rossmann fold, MAla dehydrogenase; HET: NAI; 2.00A {Ascaris suum} SCOP: c.2.1.7 c.58.1.3 PDB: 1llq_A* Length = 605

 Score =  125 bits (315), Expect = 6e-30
 Identities = 39/106 (36%), Positives = 61/106 (57%), Gaps = 6/106 (5%)

Query: 1   LLASLRITKTRLSDNTILFQGAGEASLGIADLCVMAMQKEGTSEQDARDKIWMVDSKGLI 60
           LL   R+TK  +S    LF GAG AS GIA++ V  MQ EG S+++A ++I+++D  GL+
Sbjct: 307 LLTCTRVTKKLVSQEKYLFFGAGAASTGIAEMIVHQMQNEGISKEEACNRIYLMDIDGLV 366

Query: 61  VKDRPEGGVTGHKVHYAKKHAPVKNLADVVKTVKPSILIEELKGLS 106
            K+R E  +    V +AK      ++ +V++  +P  LI    G S
Sbjct: 367 TKNRKE--MNPRHVQFAKDMPETTSILEVIRAARPGALI----GAS 406

>1o0s_A NAD-ME, NAD-dependent malic enzyme; oxidoreductase, oxidative decarboxylase, rossmann fold, MAla dehydrogenase; HET: NAI; 2.00A {Ascaris suum} SCOP: c.2.1.7 c.58.1.3 PDB: 1llq_A* Length = 605

 Score =  116 bits (293), Expect = 3e-27
 Identities = 37/94 (39%), Positives = 58/94 (61%), Gaps = 2/94 (2%)

Query: 224 VAGLLASLRITKTRLSDNTILFQGAGEASLGIADLCVMAMQKEGTSEQDARDKIWMVDSK 283
           VAGLL   R+TK  +S    LF GAG AS GIA++ V  MQ EG S+++A ++I+++D  
Sbjct: 304 VAGLLTCTRVTKKLVSQEKYLFFGAGAASTGIAEMIVHQMQNEGISKEEACNRIYLMDID 363

Query: 284 GLIVKDRPEGGVTGHKVHYAKKHAPVKNLADVVK 317
           GL+ K+R E  +    V +AK      ++ +V++
Sbjct: 364 GLVTKNRKE--MNPRHVQFAKDMPETTSILEVIR 395

>1o0s_A NAD-ME, NAD-dependent malic enzyme; oxidoreductase, oxidative decarboxylase, rossmann fold, MAla dehydrogenase; HET: NAI; 2.00A {Ascaris suum} SCOP: c.2.1.7 c.58.1.3 PDB: 1llq_A* Length = 605

 Score =  100 bits (252), Expect = 3e-22
 Identities = 28/78 (35%), Positives = 48/78 (61%), Gaps = 2/78 (2%)

Query: 142 ASLGIADLCVMAMQKEGTSEQDARDKIWMVDSKGLIVKDRPEGGVTGHKVHYAKKHAPVK 201
           AS GIA++ V  MQ EG S+++A ++I+++D  GL+ K+R E  +    V +AK      
Sbjct: 331 ASTGIAEMIVHQMQNEGISKEEACNRIYLMDIDGLVTKNRKE--MNPRHVQFAKDMPETT 388

Query: 202 NLADVVKTVKPSILIGES 219
           ++ +V++  +P  LIG S
Sbjct: 389 SILEVIRAARPGALIGAS 406

>1o0s_A NAD-ME, NAD-dependent malic enzyme; oxidoreductase, oxidative decarboxylase, rossmann fold, MAla dehydrogenase; HET: NAI; 2.00A {Ascaris suum} SCOP: c.2.1.7 c.58.1.3 PDB: 1llq_A* Length = 605

 Score = 65.5 bits (160), Expect = 4e-11
 Identities = 25/32 (78%), Positives = 30/32 (93%)

Query: 817 DRNERLFYRLLSEYVVELMPIVYTPTVGLACQ 848
           DRNE+LFYR++ ++V ELMPIVYTPTVGLACQ
Sbjct: 104 DRNEKLFYRVVCDHVKELMPIVYTPTVGLACQ 135

>1o0s_A NAD-ME, NAD-dependent malic enzyme; oxidoreductase, oxidative decarboxylase, rossmann fold, MAla dehydrogenase; HET: NAI; 2.00A {Ascaris suum} SCOP: c.2.1.7 c.58.1.3 PDB: 1llq_A* Length = 605

 Score = 46.7 bits (111), Expect = 3e-05
 Identities = 22/60 (36%), Positives = 32/60 (53%), Gaps = 2/60 (3%)

Query: 737 RLSDNTILFQGAGEGTASVAIAGLLASLRITKTRLSDNTILFQGSGEGTASVAVAGVLAS 796
           +  D   +F    +GTASV +AGLL   R+TK  +S    LF G+  G AS  +A ++  
Sbjct: 284 KYQDKYTMFNDDIQGTASVIVAGLLTCTRVTKKLVSQEKYLFFGA--GAASTGIAEMIVH 341

>1o0s_A NAD-ME, NAD-dependent malic enzyme; oxidoreductase, oxidative decarboxylase, rossmann fold, MAla dehydrogenase; HET: NAI; 2.00A {Ascaris suum} SCOP: c.2.1.7 c.58.1.3 PDB: 1llq_A* Length = 605

 Score = 45.9 bits (109), Expect = 5e-05
 Identities = 20/47 (42%), Positives = 26/47 (55%)

Query: 770 RLSDNTILFQGSGEGTASVAVAGVLASLRITKTRLSDNTILFQGAGE 816
           +  D   +F    +GTASV VAG+L   R+TK  +S    LF GAG 
Sbjct: 284 KYQDKYTMFNDDIQGTASVIVAGLLTCTRVTKKLVSQEKYLFFGAGA 330

>3nv9_A Malic enzyme; rossmann fold, oxidoreductase; 2.25A {Entamoeba histolytica} Length = 487

 Score = 73.5 bits (181), Expect = 1e-13
 Identities = 55/179 (30%), Positives = 85/179 (47%), Gaps = 41/179 (22%)

Query: 562 VVTDGERILGLGDLGAYGMGIPV--GKLSLYTALAGIKPHQCLPITLDVGTNTQQLLDDP 619
           VV+D  R+LG GD+   G G+ V  GK  L   L GI     +PI +D  +  ++  +DP
Sbjct: 95  VVSDSTRVLGDGDVTPPG-GLGVMEGKALLMKYLGGI---DAVPICID--SKNKEGKNDP 148

Query: 620 LYIGLRQRRTTGQAYDDFIEEFMQAVVAR----YGQHVLIQFEDFANHSAFRFLDTYRNR 675
                          D  IE      V R    +G    I  ED +  + ++ LD  R  
Sbjct: 149 ---------------DAVIE-----FVQRIQHTFGA---INLEDISQPNCYKILDVLRES 185

Query: 676 YC---VFNDDIQGTASVAVAGLLASLRITKTRLSDNTILFQGAGEGTASVAVAGLLASL 731
            C   V++DD QGTASV +AGLL +L++ K  + +  ++F GA  G+++     L+ + 
Sbjct: 186 -CDIPVWHDDQQGTASVTLAGLLNALKLVKKDIHECRMVFIGA--GSSNTTCLRLIVTA 241

>3nv9_A Malic enzyme; rossmann fold, oxidoreductase; 2.25A {Entamoeba histolytica} Length = 487

 Score = 51.1 bits (123), Expect = 9e-07
 Identities = 26/98 (26%), Positives = 41/98 (41%), Gaps = 13/98 (13%)

Query: 225 AGLLASLRITKTRLSDNTILFQGAGEASLGIADLCVMAMQKEGTSEQDARDKIWMVDSKG 284
           AGLL +L++ K  + +  ++F GAG ++     L V A    G        KI M DSKG
Sbjct: 204 AGLLNALKLVKKDIHECRMVFIGAGSSNTTCLRLIVTA----GAD----PKKIVMFDSKG 255

Query: 285 LIVKDRPEG---GVTGHKVHYAKKHAPVK--NLADVVK 317
            +   R +         K    +   P K  ++A+   
Sbjct: 256 SLHNGREDIKKDTRFYRKWEICETTNPSKFGSIAEACV 293

>3nv9_A Malic enzyme; rossmann fold, oxidoreductase; 2.25A {Entamoeba histolytica} Length = 487

 Score = 46.9 bits (112), Expect = 2e-05
 Identities = 24/96 (25%), Positives = 39/96 (40%), Gaps = 13/96 (13%)

Query: 1   LLASLRITKTRLSDNTILFQGAGEASLGIADLCVMAMQKEGTSEQDARDKIWMVDSKGLI 60
           LL +L++ K  + +  ++F GAG ++     L V A    G        KI M DSKG +
Sbjct: 206 LLNALKLVKKDIHECRMVFIGAGSSNTTCLRLIVTA----GAD----PKKIVMFDSKGSL 257

Query: 61  VKDRPEG---GVTGHKVHYAKKHAPVK--NLADVVK 91
              R +         K    +   P K  ++A+   
Sbjct: 258 HNGREDIKKDTRFYRKWEICETTNPSKFGSIAEACV 293

>3nv9_A Malic enzyme; rossmann fold, oxidoreductase; 2.25A {Entamoeba histolytica} Length = 487

 Score = 41.9 bits (99), Expect = 8e-04
 Identities = 17/37 (45%), Positives = 21/37 (56%), Gaps = 3/37 (8%)

Query: 380 VVTDGERILGLGDLGAYGMGIPV--GKLSLYTALAGI 414
           VV+D  R+LG GD+   G G+ V  GK  L   L GI
Sbjct: 95  VVSDSTRVLGDGDVTPPG-GLGVMEGKALLMKYLGGI 130

>2a9f_A Putative malic enzyme ((S)-malate:NAD+ oxidoreductase (decarboxylating)); hypothetical protein, structural genomics, PSI; 2.50A {Streptococcus pyogenes} Length = 398

 Score = 63.3 bits (155), Expect = 1e-10
 Identities = 50/177 (28%), Positives = 76/177 (42%), Gaps = 43/177 (24%)

Query: 562 VVTDGERILGLGDLGAYGMGIPV--GKLSLYTALAGIKPHQCLPITLDVGTNTQQLLDDP 619
           V++DG  +LGLGD+G     +PV  GK +L+ A AG+     +PI LD    T+    D 
Sbjct: 70  VISDGTAVLGLGDIGPEA-AMPVMEGKAALFKAFAGV---DAIPIVLD----TK----DT 117

Query: 620 LYIGLRQRRTTGQAYDDFIEEFMQAVVA---RYGQHVLIQFEDFANHSAFRFLDTYRNRY 676
                              EE +  V A    +G    I  ED +    F          
Sbjct: 118 -------------------EEIISIVKALAPTFGG---INLEDISAPRCFEIEQRLIKEC 155

Query: 677 C--VFNDDIQGTASVAVAGLLASLRITKTRLSDNTILFQGAGEGTASVAVAGLLASL 731
              VF+DD  GTA V +A +  SL++ K  L + +I+  G   G+A +++   L + 
Sbjct: 156 HIPVFHDDQHGTAIVVLAAIFNSLKLLKKSLDEVSIVVNGG--GSAGLSITRKLLAA 210

>2a9f_A Putative malic enzyme ((S)-malate:NAD+ oxidoreductase (decarboxylating)); hypothetical protein, structural genomics, PSI; 2.50A {Streptococcus pyogenes} Length = 398

 Score = 52.9 bits (128), Expect = 3e-07
 Identities = 22/96 (22%), Positives = 38/96 (39%), Gaps = 14/96 (14%)

Query: 225 AGLLASLRITKTRLSDNTILFQGAGEASLGIADLCVMAMQKEGTSEQDARDKIWMVDSKG 284
           A +  SL++ K  L + +I+  G G A L I       +   G     A   + +VD  G
Sbjct: 173 AAIFNSLKLLKKSLDEVSIVVNGGGSAGLSITRK----LLAAG-----ATK-VTVVDKFG 222

Query: 285 LIVKDRPEGGVTGHKVHYAK---KHAPVKNLADVVK 317
           +I +      +  H +  AK   +      L D ++
Sbjct: 223 IINEQEAA-QLAPHHLDIAKVTNREFKSGTLEDALE 257

>2a9f_A Putative malic enzyme ((S)-malate:NAD+ oxidoreductase (decarboxylating)); hypothetical protein, structural genomics, PSI; 2.50A {Streptococcus pyogenes} Length = 398

 Score = 48.3 bits (116), Expect = 6e-06
 Identities = 21/94 (22%), Positives = 37/94 (39%), Gaps = 14/94 (14%)

Query: 1   LLASLRITKTRLSDNTILFQGAGEASLGIADLCVMAMQKEGTSEQDARDKIWMVDSKGLI 60
           +  SL++ K  L + +I+  G G A L I       +   G     A   + +VD  G+I
Sbjct: 175 IFNSLKLLKKSLDEVSIVVNGGGSAGLSITRK----LLAAG-----ATK-VTVVDKFGII 224

Query: 61  VKDRPEGGVTGHKVHYAK---KHAPVKNLADVVK 91
            +      +  H +  AK   +      L D ++
Sbjct: 225 NEQEAA-QLAPHHLDIAKVTNREFKSGTLEDALE 257

>2a9f_A Putative malic enzyme ((S)-malate:NAD+ oxidoreductase (decarboxylating)); hypothetical protein, structural genomics, PSI; 2.50A {Streptococcus pyogenes} Length = 398

 Score = 41.7 bits (99), Expect = 7e-04
 Identities = 19/68 (27%), Positives = 33/68 (48%), Gaps = 3/68 (4%)

Query: 718 GTASVAVAGLLASLRITKTRLSDNTILFQGAGEGTASVAIAGLLASLRITKTRLSDNT-I 776
           GTA V +A +  SL++ K  L + +I+  G G  +A ++I   L +   TK  + D   I
Sbjct: 166 GTAIVVLAAIFNSLKLLKKSLDEVSIVVNGGG--SAGLSITRKLLAAGATKVTVVDKFGI 223

Query: 777 LFQGSGEG 784
           + +     
Sbjct: 224 INEQEAAQ 231

>2dvm_A Malic enzyme, 439AA long hypothetical malate oxidoreductase; NAD, structural genomics, NPPSFA; HET: NAD MES; 1.60A {Pyrococcus horikoshii} PDB: 1ww8_A* Length = 439

 Score = 63.4 bits (155), Expect = 1e-10
 Identities = 54/178 (30%), Positives = 79/178 (44%), Gaps = 45/178 (25%)

Query: 562 VVTDGERILGLGDLGAYGMGIPV--GKLSLYTALAGIKPHQCLPITLDVGTNTQQLLDDP 619
           VV+DG RILGLG++G    G+PV  GK  L+    G+      PI +           +P
Sbjct: 68  VVSDGSRILGLGNIGPLA-GLPVMEGKALLFKRFGGV---DAFPIMIKE--------QEP 115

Query: 620 LYIGLRQRRTTGQAYDDFIEEFMQAVVAR----YGQHVLIQFEDFANHSAFRFLDTYRNR 675
                          + FI+     +V      +G    I  ED A+   F  L+  R  
Sbjct: 116 ---------------NKFID-----IVKAIAPTFGG---INLEDIASPKCFYILERLREE 152

Query: 676 YC--VFNDDIQGTASVAVAGLLASLRITKTRLSDNTILFQGAGEGTASVAVAGLLASL 731
               VF+DD QGTA+V +AGLL +L++   ++S+ T+   GA  G A  A   +L   
Sbjct: 153 LDIPVFHDDQQGTAAVVLAGLLNALKVVGKKISEITLALFGA--GAAGFATLRILTEA 208

>2dvm_A Malic enzyme, 439AA long hypothetical malate oxidoreductase; NAD, structural genomics, NPPSFA; HET: NAD MES; 1.60A {Pyrococcus horikoshii} PDB: 1ww8_A* Length = 439

 Score = 45.3 bits (108), Expect = 7e-05
 Identities = 18/100 (18%), Positives = 36/100 (36%), Gaps = 15/100 (15%)

Query: 225 AGLLASLRITKTRLSDNTILFQGAGEASLGIADLCVMAMQKEGTSEQDARDKIWMVD--- 281
           AGLL +L++   ++S+ T+   GAG A      +   A  K         + + +V+   
Sbjct: 171 AGLLNALKVVGKKISEITLALFGAGAAGFATLRILTEAGVK--------PENVRVVELVN 222

Query: 282 SKGLIVKDRP-EGGVTGHKVHYAK---KHAPVKNLADVVK 317
            K  I+        +  ++    K            + +K
Sbjct: 223 GKPRILTSDLDLEKLFPYRGWLLKKTNGENIEGGPQEALK 262

>1vl6_A Malate oxidoreductase; TM0542, NAD-dependent malic enzyme, structural genomics, JCS protein structure initiative, PSI; 2.61A {Thermotoga maritima} SCOP: c.2.1.7 c.58.1.3 PDB: 2hae_A* Length = 388

 Score = 61.8 bits (151), Expect = 4e-10
 Identities = 49/177 (27%), Positives = 71/177 (40%), Gaps = 43/177 (24%)

Query: 562 VVTDGERILGLGDLGAYGMGIPV--GKLSLYTALAGIKPHQCLPITLDVGTNTQQLLDDP 619
           VV+DG  +LGLG++G YG  +PV  GK  L+ A A I      PI L           + 
Sbjct: 74  VVSDGSAVLGLGNIGPYG-ALPVMEGKAFLFKAFADI---DAFPICLS----ES----EE 121

Query: 620 LYIGLRQRRTTGQAYDDFIEEFMQAVVA---RYGQHVLIQFEDFANHSAFRFLDTYRNRY 676
                              E+ +  V +    +G    I  ED      FR L       
Sbjct: 122 -------------------EKIISIVKSLEPSFGG---INLEDIGAPKCFRILQRLSEEM 159

Query: 677 C--VFNDDIQGTASVAVAGLLASLRITKTRLSDNTILFQGAGEGTASVAVAGLLASL 731
              VF+DD QGTA V  A  L +L++T+ ++ +  ++  G   G A   +   L  L
Sbjct: 160 NIPVFHDDQQGTAVVVSAAFLNALKLTEKKIEEVKVVVNGI--GAAGYNIVKFLLDL 214

>1vl6_A Malate oxidoreductase; TM0542, NAD-dependent malic enzyme, structural genomics, JCS protein structure initiative, PSI; 2.61A {Thermotoga maritima} SCOP: c.2.1.7 c.58.1.3 PDB: 2hae_A* Length = 388

 Score = 57.9 bits (141), Expect = 6e-09
 Identities = 17/96 (17%), Positives = 41/96 (42%), Gaps = 13/96 (13%)

Query: 225 AGLLASLRITKTRLSDNTILFQGAGEASLGIADLCVMAMQKEGTSEQDARDKIWMVDSKG 284
           A  L +L++T+ ++ +  ++  G G A   I       +   G      ++ +  VD KG
Sbjct: 177 AAFLNALKLTEKKIEEVKVVVNGIGAAGYNIVKF----LLDLG-----VKN-VVAVDRKG 226

Query: 285 LIVKDRPEGGVTGHKVHYAK---KHAPVKNLADVVK 317
           ++ ++ PE  +  + +  A+         +L   ++
Sbjct: 227 ILNENDPETCLNEYHLEIARITNPERLSGDLETALE 262

>1vl6_A Malate oxidoreductase; TM0542, NAD-dependent malic enzyme, structural genomics, JCS protein structure initiative, PSI; 2.61A {Thermotoga maritima} SCOP: c.2.1.7 c.58.1.3 PDB: 2hae_A* Length = 388

 Score = 53.7 bits (130), Expect = 1e-07
 Identities = 16/94 (17%), Positives = 40/94 (42%), Gaps = 13/94 (13%)

Query: 1   LLASLRITKTRLSDNTILFQGAGEASLGIADLCVMAMQKEGTSEQDARDKIWMVDSKGLI 60
            L +L++T+ ++ +  ++  G G A   I       +   G      ++ +  VD KG++
Sbjct: 179 FLNALKLTEKKIEEVKVVVNGIGAAGYNIVKF----LLDLG-----VKN-VVAVDRKGIL 228

Query: 61  VKDRPEGGVTGHKVHYAK---KHAPVKNLADVVK 91
            ++ PE  +  + +  A+         +L   ++
Sbjct: 229 NENDPETCLNEYHLEIARITNPERLSGDLETALE 262

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 61.4 bits (148), Expect = 1e-09
 Identities = 88/623 (14%), Positives = 163/623 (26%), Gaps = 224/623 (35%)

Query: 205 DVVKTVKPSILIGESCVNDVAGLLASLRITKTRLSDNTILFQGAGEASLGIADLCVMAMQ 264
           D++   + + +    C  DV  +  S+ ++K  +    I+      +        +++ Q
Sbjct: 20  DILSVFEDAFVDNFDC-KDVQDMPKSI-LSKEEIDH--IIMSKDAVSGTLRLFWTLLSKQ 75

Query: 265 KEGTS----EQDARDKIWMVDSKGLIVKDRPEGGVTGHKVHYAKKHAPVKNLADVVKTGM 320
           +E       E    +  +++      +K       +     Y ++   + N   V     
Sbjct: 76  EEMVQKFVEEVLRINYKFLMSP----IKTEQRQP-SMMTRMYIEQRDRLYNDNQVFAKYN 130

Query: 321 AFSIEE----RQAL---------GIHGL-------LPAAVKSQDEQLHLCK------LNV 354
              ++     RQAL          I G+       +   V     ++          LN+
Sbjct: 131 VSRLQPYLKLRQALLELRPAKNVLIDGVLGSGKTWVALDV-CLSYKVQCKMDFKIFWLNL 189

Query: 355 DRYEDPLNKYIYLQALAVKTDIRAIVVTDGERILGLGDLGAYGMGIPVGKLSLYTALAGI 414
                P      LQ L  + D                    +   I +   S+   L  +
Sbjct: 190 KNCNSPETVLEMLQKLLYQID------------PNWTSRSDHSSNIKLRIHSIQAELRRL 237

Query: 415 ---KPHQ-CLPITLDVGTNWRRAAAIPQVFTADILKDMAAFN----------KRPIIFAL 460
              KP++ CL + L+V               A       AFN           + +   L
Sbjct: 238 LKSKPYENCLLVLLNV---Q----------NAKAWN---AFNLSCKILLTTRFKQVTDFL 281

Query: 461 SNPTSKAECTAEQAYVNT--DGRGVFA---------------SGSPF-----------DP 492
           S  T+        +   T  + + +                 + +P              
Sbjct: 282 SAATTTHISLDHHSMTLTPDEVKSLLLKYLDCRPQDLPREVLTTNPRRLSIIAESIRDGL 341

Query: 493 VTYKG-----------------KTFTPG--QEYVVEL--MPI-VYTPTVGLA-------- 522
            T+                       P   ++    L   P   + PT+ L+        
Sbjct: 342 ATWDNWKHVNCDKLTTIIESSLNVLEPAEYRKMFDRLSVFPPSAHIPTILLSLIWFDVIK 401

Query: 523 ---------CQKYGLIFRRPRGLFISIHDKGHISEVLRNWPETDIRAIVVTDGERILGLG 573
                      KY L+ ++P+   ISI    ++   ++   E  +   +V   +      
Sbjct: 402 SDVMVVVNKLHKYSLVEKQPKESTISIPS-IYLELKVKLENEYALHRSIV---DH----- 452

Query: 574 DLGAYGMGIPVGKLSLYTALAGIKPHQCLPITLDVGTNTQQLLDDPLYIGLRQRRTTGQA 633
                           Y           +P  LD             Y            
Sbjct: 453 ----------------YNIPKTFDSDDLIPPYLDQ------------YF----------- 473

Query: 634 YDDFIEEFMQAVVARYGQHVLIQFEDFANHSAFR--FLDTYRNRYCVF------NDDIQG 685
           Y   I           G H L   E     + FR  FLD +R     F      +D    
Sbjct: 474 YS-HI-----------GHH-LKNIEHPERMTLFRMVFLD-FR-----FLEQKIRHDSTAW 514

Query: 686 TASVAVAGLLASLRITKTRLSDN 708
            AS ++   L  L+  K  + DN
Sbjct: 515 NASGSILNTLQQLKFYKPYICDN 537

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 46.4 bits (109), Expect = 4e-05
 Identities = 61/401 (15%), Positives = 112/401 (27%), Gaps = 120/401 (29%)

Query: 46  DARDKIWMVDSKGLIVKD---RPEGGVTGHKVHYAKKHA----PVKNLADVV-------K 91
           + RD+++  +   +  K    R +           ++      P KN+  ++       K
Sbjct: 114 EQRDRLY--NDNQVFAKYNVSRLQ------PYLKLRQALLELRPAKNV--LIDGVLGSGK 163

Query: 92  TVKPSILIEELKGLSQRDFLSSWLNRGPCLNCWGKRDFEQDKQGISYSIHASLGIADLCV 151
           T     +    K   + DF   WLN     NC       +  Q + Y I  +   +    
Sbjct: 164 TWVALDVCLSYKVQCKMDFKIFWLNLK---NCNSPETVLEMLQKLLYQIDPNW-TSRSDH 219

Query: 152 MAMQKEGTSEQDARDKIWMVDS---KGLIVKDRPEGGVTGHKVHYAKKHAPV-------- 200
            +  K       A  +  +        L+V       V         K            
Sbjct: 220 SSNIKLRIHSIQAELRRLLKSKPYENCLLVLL----NV------QNAKAWNAFNLSCKIL 269

Query: 201 -----KNLADVVKTVKPSILIGESCVN-----DVAGLLAS-LRITKTRLSDNTILFQGAG 249
                K + D +     + +  +         +V  LL   L      L           
Sbjct: 270 LTTRFKQVTDFLSAATTTHISLDHHSMTLTPDEVKSLLLKYLDCRPQDLPR--------- 320

Query: 250 EASLGIADLCVM--AMQKEGTS-----EQDARDKIWMVDSKGLIVKDRPEGGVTGHKVHY 302
           E          +     ++G +     +    DK+  +    L V +  E     ++  +
Sbjct: 321 EVLTTNPRRLSIIAESIRDGLATWDNWKHVNCDKLTTIIESSLNVLEPAE-----YRKMF 375

Query: 303 AK-----KHA--PVKNLA------------DVVKTGMAFSIEERQA----LGIHGL-LPA 338
            +       A  P   L+             VV     +S+ E+Q     + I  + L  
Sbjct: 376 DRLSVFPPSAHIPTILLSLIWFDVIKSDVMVVVNKLHKYSLVEKQPKESTISIPSIYLEL 435

Query: 339 AVKSQDE-QLHLCKLNVDRYE------------DPLNKYIY 366
            VK ++E  LH  +  VD Y               L++Y Y
Sbjct: 436 KVKLENEYALH--RSIVDHYNIPKTFDSDDLIPPYLDQYFY 474

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	848
1pj3_A	564	NAD-dependent malic enzyme, mitochondrial; oxidati	100.0
1gq2_A	555	Malic enzyme; oxidoreductase, pigeon liver, NADP-d	100.0
1o0s_A	605	NAD-ME, NAD-dependent malic enzyme; oxidoreductase	100.0
1o0s_A	605	NAD-ME, NAD-dependent malic enzyme; oxidoreductase	100.0
1gq2_A	555	Malic enzyme; oxidoreductase, pigeon liver, NADP-d	100.0
1pj3_A	564	NAD-dependent malic enzyme, mitochondrial; oxidati	100.0
3nv9_A	487	Malic enzyme; rossmann fold, oxidoreductase; 2.25A	100.0
3nv9_A	487	Malic enzyme; rossmann fold, oxidoreductase; 2.25A	100.0
2a9f_A	398	Putative malic enzyme ((S)-malate:NAD+ oxidoreduct	100.0
1vl6_A	388	Malate oxidoreductase; TM0542, NAD-dependent malic	100.0
2a9f_A	398	Putative malic enzyme ((S)-malate:NAD+ oxidoreduct	100.0
1vl6_A	388	Malate oxidoreductase; TM0542, NAD-dependent malic	100.0
2dvm_A	439	Malic enzyme, 439AA long hypothetical malate oxido	100.0
2dvm_A	439	Malic enzyme, 439AA long hypothetical malate oxido	99.98
3gvp_A	435	Adenosylhomocysteinase 3; protein CO-factor comple	97.27
3h9u_A	436	Adenosylhomocysteinase; NAD CO-factor complex, str	97.14
3gvp_A	435	Adenosylhomocysteinase 3; protein CO-factor comple	97.12
3h9u_A	436	Adenosylhomocysteinase; NAD CO-factor complex, str	96.76
4dio_A	405	NAD(P) transhydrogenase subunit alpha PART 1; stru	96.33
4fcc_A	450	Glutamate dehydrogenase; protein complex, rossmann	95.96
1x13_A	401	NAD(P) transhydrogenase subunit alpha; NAD(H)-bind	95.85
3k92_A	424	NAD-GDH, NAD-specific glutamate dehydrogenase; ROC	95.8
3ond_A	488	Adenosylhomocysteinase; plant protein, enzyme-subs	95.41
3aoe_E	419	Glutamate dehydrogenase; rossmann fold, NADH, oxid	95.38
3ef6_A	410	Toluene 1,2-dioxygenase system ferredoxin--NAD(+)	95.27
2bma_A	470	Glutamate dehydrogenase (NADP+); malaria, drug des	95.09
3klj_A	385	NAD(FAD)-dependent dehydrogenase, NIRB-family (N-	94.99
3p2y_A	381	Alanine dehydrogenase/pyridine nucleotide transhy;	94.92
3kd9_A	449	Coenzyme A disulfide reductase; PSI-II, NYSGXRC, o	94.57
3n58_A	464	Adenosylhomocysteinase; ssgcid, hydrolase, structu	93.97
2yfq_A	421	Padgh, NAD-GDH, NAD-specific glutamate dehydrogena	93.87
4dio_A	405	NAD(P) transhydrogenase subunit alpha PART 1; stru	93.75
3r3j_A	456	Glutamate dehydrogenase; rossman fold, oxidoreduct	93.74
1v9l_A	421	Glutamate dehydrogenase; protein-NAD complex, oxid	93.32
3aog_A	440	Glutamate dehydrogenase; NAD(H), oxidoreducta; HET	92.98
2tmg_A	415	Protein (glutamate dehydrogenase); metabolic role,	92.86
3kkj_A	336	Amine oxidase, flavin-containing; oxidoreductase,	92.7
3jyo_A	283	Quinate/shikimate dehydrogenase; enzyme-cofactor c	91.56
3mw9_A	501	GDH 1, glutamate dehydrogenase 1; allostery, inhib	91.39
3t4e_A	312	Quinate/shikimate dehydrogenase; structural genomi	90.98
3tnl_A	315	Shikimate dehydrogenase; structural genomics, cent	90.88
3pwz_A	272	Shikimate dehydrogenase 3; alpha-beta, oxidoreduct	90.88
3o8q_A	281	Shikimate 5-dehydrogenase I alpha; structural geno	90.85
3fbt_A	282	Chorismate mutase and shikimate 5-dehydrogenase fu	90.77
3don_A	277	Shikimate dehydrogenase; alpha-beta structure, ros	90.6
3n58_A	464	Adenosylhomocysteinase; ssgcid, hydrolase, structu	90.47
1bgv_A	449	Glutamate dehydrogenase; oxidoreductase; HET: GLU;	90.28
3tum_A	269	Shikimate dehydrogenase family protein; rossmann-f	89.78
3ond_A	488	Adenosylhomocysteinase; plant protein, enzyme-subs	89.62
3don_A	277	Shikimate dehydrogenase; alpha-beta structure, ros	89.0
2egg_A	297	AROE, shikimate 5-dehydrogenase; dimer, X-RAY diff	88.7
2hk9_A	275	Shikimate dehydrogenase; shikimate pathway, drug d	88.17
3k92_A	424	NAD-GDH, NAD-specific glutamate dehydrogenase; ROC	87.3
1nyt_A	271	Shikimate 5-dehydrogenase; alpha/beta domains, WID	87.01
2jae_A	489	L-amino acid oxidase; oxidoreductase, dimerisation	86.08
1p77_A	272	Shikimate 5-dehydrogenase; NADPH, oxidoreductase;	86.04
2d5c_A	263	AROE, shikimate 5-dehydrogenase; substrate, dimer,	85.94
3d4o_A	293	Dipicolinate synthase subunit A; NP_243269.1, stru	85.81
3p2o_A	285	Bifunctional protein fold; structural genomics, ce	85.29
1nvt_A	287	Shikimate 5'-dehydrogenase; structural genomics, P	84.81
3l07_A	285	Bifunctional protein fold; structural genomics, ID	84.35
3vrd_B	401	FCCB subunit, flavocytochrome C flavin subunit; su	83.97
3kkj_A	336	Amine oxidase, flavin-containing; oxidoreductase,	83.81
4a9w_A	357	Monooxygenase; baeyer-villiger, FAD, oxidoreductas	83.46
3u62_A	253	Shikimate dehydrogenase; shikimate pathway, oxidor	83.43
1a4i_A	301	Methylenetetrahydrofolate dehydrogenase / methenyl	83.38
4hb9_A	412	Similarities with probable monooxygenase; flavin,	83.21
3fbt_A	282	Chorismate mutase and shikimate 5-dehydrogenase fu	82.8
2hk9_A	275	Shikimate dehydrogenase; shikimate pathway, drug d	82.77
3d1c_A	369	Flavin-containing putative monooxygenase; NP_37310	82.48
3pwz_A	272	Shikimate dehydrogenase 3; alpha-beta, oxidoreduct	81.85
1npy_A	271	Hypothetical shikimate 5-dehydrogenase-like protei	81.72
4a26_A	300	Putative C-1-tetrahydrofolate synthase, cytoplasm;	81.6
3o8q_A	281	Shikimate 5-dehydrogenase I alpha; structural geno	81.53
3f8d_A	323	Thioredoxin reductase (TRXB-3); redox protein, nuc	81.41
3h8v_A	292	Ubiquitin-like modifier-activating enzyme 5; rossm	81.4
1gtm_A	419	Glutamate dehydrogenase; oxidoreductase, NAD, NADP	81.37
3t4e_A	312	Quinate/shikimate dehydrogenase; structural genomi	81.06
3tnl_A	315	Shikimate dehydrogenase; structural genomics, cent	81.01
3jyo_A	283	Quinate/shikimate dehydrogenase; enzyme-cofactor c	80.85
3fbs_A	297	Oxidoreductase; structural genomics, PSI2, MCSG, p	80.43
1lu9_A	287	Methylene tetrahydromethanopterin dehydrogenase; a	80.39
1edz_A	320	5,10-methylenetetrahydrofolate dehydrogenase; nucl	80.29
1l7d_A	384	Nicotinamide nucleotide transhydrogenase, subunit	80.11

>1pj3_A NAD-dependent malic enzyme, mitochondrial; oxidative decarboxylase, oxidoreductase; HET: NAD; 2.10A {Homo sapiens} SCOP: c.2.1.7 c.58.1.3 PDB: 1pj2_A* 1do8_A* 1pj4_A* 1qr6_A* 1efl_A* 1pjl_A* 1efk_A* 1gz4_A* 1gz3_A*

Probab=100.00  E-value=1.5e-103  Score=886.02  Aligned_cols=358  Identities=48%  Similarity=0.860  Sum_probs=335.3

Q ss_pred             Ccchhhh-hhhccccccHHHHhhhcccccCcccccchhHHHHHhhccccccCCChhhHHHHHHhhcccceeEEEeccCce
Q psy14377        308 PVKNLAD-VVKTGMAFSIEERQALGIHGLLPAAVKSQDEQLHLCKLNVDRYEDPLNKYIYLQALAVKTDIRAIVVTDGER  386 (848)
Q Consensus       308 ~~~~l~~-~~n~g~~~~~~er~~~~~~G~~p~~v~~~~~q~~~~~~~~~~~~~~~~~~~~L~~l~~~~~~~~~~~~d~~~  386 (848)
                      +...|++ .+|||++||.+||+++|++|||||.|+|+|+|++||+.++++++++++||+||.+++++          |++
T Consensus         5 G~~lL~~p~~NKGtAFt~~ER~~l~l~GLLPp~v~t~e~Q~~r~~~~~~~~~~~l~k~~~L~~L~~~----------Ne~   74 (564)
T 1pj3_A            5 GKPLMLNPRTNKGMAFTLQERQMLGLQGLLPPKIETQDIQALRFHRNLKKMTSPLEKYIYIMGIQER----------NEK   74 (564)
T ss_dssp             STHHHHSTTTCCGGGSCHHHHHHTTCTTTSCSCCCCHHHHHHHHHHHHHHCCSHHHHHHHHHHHHTT----------CHH
T ss_pred             hHHHhCCCcccCCCCCCHHHHHhCCCCcCCCCCcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHhhcc----------cce
Confidence            4566777 88999999999999999999999999999999999999999999999999999999998          776


Q ss_pred             ecccccCCCCCCCcccccccHHHHHcCCCcCccCceeeEEccccccccCCCCCCCHHHHHHHHhcCCCceEEecCCCCCc
Q psy14377        387 ILGLGDLGAYGMGIPVGKLSLYTALAGIKPHQCLPITLDVGTNWRRAAAIPQVFTADILKDMAAFNKRPIIFALSNPTSK  466 (848)
Q Consensus       387 l~g~~~~g~~~~~~~~g~~~L~~al~g~kP~~~~~~~v~iG~~~~~~S~~~g~FTeevvk~Ma~~~~rPIIFaLSNPt~~  466 (848)
                      |                                                                               
T Consensus        75 L-------------------------------------------------------------------------------   75 (564)
T 1pj3_A           75 L-------------------------------------------------------------------------------   75 (564)
T ss_dssp             H-------------------------------------------------------------------------------
T ss_pred             e-------------------------------------------------------------------------------
Confidence            6                                                                               


Q ss_pred             cCCCHHHHhccCCCcEEEEeCCCCCCcccCCeEEecccchhhccCCeEecchhhhHHHhhccccccCccceeeccCcccH
Q psy14377        467 AECTAEQAYVNTDGRGVFASGSPFDPVTYKGKTFTPGQEYVVELMPIVYTPTVGLACQKYGLIFRRPRGLFISIHDKGHI  546 (848)
Q Consensus       467 ~E~tpe~a~~~T~G~ai~AtGsPf~pv~y~g~~~~~~q~nn~e~lPvvYTPGVG~acl~~~~i~r~p~gm~L~~~d~g~i  546 (848)
                                                 ||+     +.+.|..++||++||||||++|+.++.+|++|+|||+|++|++++
T Consensus        76 ---------------------------fy~-----ll~~~~~e~lpivYTP~Vg~ac~~~s~i~~~p~g~ylsi~d~~~i  123 (564)
T 1pj3_A           76 ---------------------------FYR-----ILQDDIESLMPIVYTPTVGLACSQYGHIFRRPKGLFISISDRGHV  123 (564)
T ss_dssp             ---------------------------HHH-----HHHHCHHHHHHHHSTTHHHHHHHTHHHHCSSCCSEEEEGGGTTCH
T ss_pred             ---------------------------ehh-----hhhhCHHHhCCeeeCccHHHHHHHHHHHhcCcccccccccCHHHH
Confidence                                       555     778999999999999999999999999999999999999999999


Q ss_pred             HHHHhcCCCCCccEEEEecCceeeccCCCCCCCCCccccceeeeeecCCCCCCceeeEEeeccCCcccccCCcccccccc
Q psy14377        547 SEVLRNWPETDIRAIVVTDGERILGLGDLGAYGMGIPVGKLSLYTALAGIKPHQCLPITLDVGTNTQQLLDDPLYIGLRQ  626 (848)
Q Consensus       547 ~eiL~Nwp~~d~~viVVTDG~rILGLGDlG~~gmgIpvGKl~Ly~a~aGI~p~~~LPv~LDvGTnn~~ll~Dp~y~g~r~  626 (848)
                      +++|+||+.+++++||||||||||||||+|++||+|||||++|||+||||||++|||||||+|||||+||+||+|+|+||
T Consensus       124 ~~~l~n~~~~~v~v~VVTDG~~ILGLGD~G~~gm~ipvGKl~Ly~~~aGIdP~~~lPI~lDvgTnn~~LL~DPlYlG~r~  203 (564)
T 1pj3_A          124 RSIVDNWPENHVKAVVVTDGERILGLGDLGVYGMGIPVGKLCLYTACAGIRPDRCLPVCIDVGTDNIALLKDPFYMGLYQ  203 (564)
T ss_dssp             HHHHTTCSCSCCCEEEEECSSSCTTSCCCGGGGGHHHHHHHHHHHHHHCCCGGGEEEEEEESCCCCTTGGGCTTCCSCSS
T ss_pred             HHHHHhCCCCCceEEEEEcccccccCCCCCCCcccceehHHHHHHhccCCChhheeeeEeecCcCchhhccCCcccCcCC
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             cCCCCcchhHHHHHHHHHHHHhhCCceeeeeecCCCcchHHHHHHHcccCceeccCCchHHHHHHHHHHHHHhhhCCcCC
Q psy14377        627 RRTTGQAYDDFIEEFMQAVVARYGQHVLIQFEDFANHSAFRFLDTYRNRYCVFNDDIQGTASVAVAGLLASLRITKTRLS  706 (848)
Q Consensus       627 ~R~~g~~y~~fvdefv~av~~~fGp~~~IqfEDf~~~naf~lL~ryr~~~~~FnDDiQGTaaV~LAgllaAlr~t~~~l~  706 (848)
                      +|++|++|++|+||||++++++|||+++||||||++||||++|+|||++||||||||||||+|+||||+||+|++|++|+
T Consensus       204 ~Rv~g~eYd~fvdefv~av~~~fG~~~~I~~EDf~~~~af~il~ryr~~ipvFnDDiqGTa~V~lAgllnAlki~gk~l~  283 (564)
T 1pj3_A          204 KRDRTQQYDDLIDEFMKAITDRYGRNTLIQFEDFGNHNAFRFLRKYREKYCTFNDDIQGTAAVALAGLLAAQKVISKPIS  283 (564)
T ss_dssp             CCCCSHHHHHHHHHHHHHHHHHHCTTCEEEECSCCHHHHHHHHHHHTTTSSEEEHHHHHHHHHHHHHHHHHHHHHCCCGG
T ss_pred             CCCchhhHHHHHHHHHHHHHHHcCCCcEEeehhcCCccHHHHHHHhccCCCEeCCCCchHHHHHHHHHHHHHHHhCCcHh
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CceEEecCcchhhHHHHHHHHHHHhcc----------ccccccc-CceecCCCCCCchH-HHhhhccccc---hhhcccc
Q psy14377        707 DNTILFQGAGEGTASVAVAGLLASLRI----------TKTRLSD-NTILFQGAGEGTAS-VAIAGLLASL---RITKTRL  771 (848)
Q Consensus       707 d~riv~~GAG~A~~g~giA~ll~~~~~----------~~~~~~d-~g~i~~~r~~~~~~-~~~~~~~~~~---r~~~~~~  771 (848)
                      ||||||+|||+|  |+|||+||+++|+          ++..++| +|+|+++|+++++. +...+..++.   ++|++++
T Consensus       284 d~riv~~GAGaA--gigia~ll~~~m~~~Gl~~eeA~~~i~~~D~~Gli~~~r~~~l~~~k~~~A~~~~~~~~~~L~eav  361 (564)
T 1pj3_A          284 EHKILFLGAGEA--ALGIANLIVMSMVENGLSEQEAQKKIWMFDKYGLLVKGRKAKIDSYQEPFTHSAPESIPDTFEDAV  361 (564)
T ss_dssp             GCCEEEECCSHH--HHHHHHHHHHHHHHTTCCHHHHHHTEEEEETTEECBTTCSSCCCTTTGGGCBCCCSSCCSSHHHHH
T ss_pred             HcEEEEeCCCHH--HHHHHHHHHHHHHHcCCChHHhhCcEEEEeCCCeEECCCcccchHHHHHHHHhcCccccCCHHHHH
Confidence            999999999999  9999999998433          3456889 99999999556665 5555666654   7899999


Q ss_pred             C--CCceEEeecC-CCcchh
Q psy14377        772 S--DNTILFQGSG-EGTASV  788 (848)
Q Consensus       772 ~--~~~~~~~~s~-~~~~~~  788 (848)
                      +  ++|+|+|+|+ .|+-+-
T Consensus       362 ~~vkp~vlIG~S~~~g~ft~  381 (564)
T 1pj3_A          362 NILKPSTIIGVAGAGRLFTP  381 (564)
T ss_dssp             HHHCCSEEEECCCSSCCSCH
T ss_pred             hhcCCCEEEEeCCCCCCCCH
Confidence            9  6999999997 566543

>1gq2_A Malic enzyme; oxidoreductase, pigeon liver, NADP-dependent, NAD-NADP selectivity, decarboxylase, malate, Mn2+; HET: NAP; 2.5A {Columba livia} SCOP: c.2.1.7 c.58.1.3 PDB: 2aw5_A

Probab=100.00  E-value=3.2e-103  Score=880.99  Aligned_cols=357  Identities=55%  Similarity=0.929  Sum_probs=333.8

Q ss_pred             Ccchhhh-hhhccccccHHHHhhhcccccCcccccchhHHHHHhhccccccCCChhhHHHHHHhhcccceeEEEeccCce
Q psy14377        308 PVKNLAD-VVKTGMAFSIEERQALGIHGLLPAAVKSQDEQLHLCKLNVDRYEDPLNKYIYLQALAVKTDIRAIVVTDGER  386 (848)
Q Consensus       308 ~~~~l~~-~~n~g~~~~~~er~~~~~~G~~p~~v~~~~~q~~~~~~~~~~~~~~~~~~~~L~~l~~~~~~~~~~~~d~~~  386 (848)
                      +...|++ .+|||++||.+||+++|++|||||.|+|+|+|++||+.++++++++++||+||.+++++          |++
T Consensus         3 G~~lL~~p~~NKGtAFt~~ER~~l~l~GLLPp~v~t~e~Q~~r~~~~~~~~~~~l~k~~~L~~L~~~----------Ne~   72 (555)
T 1gq2_A            3 GYEVLRDPHLNKGMAFTLEERQQLNIHGLLPPCFLGQDAQVYSILKNFERLTSDLDRYILLMSLQDR----------NEK   72 (555)
T ss_dssp             TTHHHHCTTTCCGGGSCHHHHHHTTCTTSSCSCBCCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH----------CHH
T ss_pred             hhhhccCCcccCCCCCCHHHHHHCCCccCCCCCcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHhcCc----------cee
Confidence            3455666 88999999999999999999999999999999999999999999999999999999998          776


Q ss_pred             ecccccCCCCCCCcccccccHHHHHcCCCcCccCceeeEEccccccccCCCCCCCHHHHHHHHhcCCCceEEecCCCCCc
Q psy14377        387 ILGLGDLGAYGMGIPVGKLSLYTALAGIKPHQCLPITLDVGTNWRRAAAIPQVFTADILKDMAAFNKRPIIFALSNPTSK  466 (848)
Q Consensus       387 l~g~~~~g~~~~~~~~g~~~L~~al~g~kP~~~~~~~v~iG~~~~~~S~~~g~FTeevvk~Ma~~~~rPIIFaLSNPt~~  466 (848)
                      |                                                                               
T Consensus        73 L-------------------------------------------------------------------------------   73 (555)
T 1gq2_A           73 L-------------------------------------------------------------------------------   73 (555)
T ss_dssp             H-------------------------------------------------------------------------------
T ss_pred             e-------------------------------------------------------------------------------
Confidence            6                                                                               


Q ss_pred             cCCCHHHHhccCCCcEEEEeCCCCCCcccCCeEEecccchhhccCCeEecchhhhHHHhhccccccCccceeeccCcccH
Q psy14377        467 AECTAEQAYVNTDGRGVFASGSPFDPVTYKGKTFTPGQEYVVELMPIVYTPTVGLACQKYGLIFRRPRGLFISIHDKGHI  546 (848)
Q Consensus       467 ~E~tpe~a~~~T~G~ai~AtGsPf~pv~y~g~~~~~~q~nn~e~lPvvYTPGVG~acl~~~~i~r~p~gm~L~~~d~g~i  546 (848)
                                                 ||+     +.+.|..++||++||||||++|+.++.+|++|+|||+|++|++++
T Consensus        74 ---------------------------fy~-----ll~~~~~e~lpivYTP~V~~ac~~~s~i~~~p~g~yis~~d~~~i  121 (555)
T 1gq2_A           74 ---------------------------FYK-----VLTSDIERFMPIVYTPTVGLACQHYGLAFRRPRGLFITIHDRGHI  121 (555)
T ss_dssp             ---------------------------HHH-----HHHHTHHHHHHHHSTTHHHHHHHTHHHHCSSCCSEEEEGGGTTCH
T ss_pred             ---------------------------ehh-----hHhhhHHHhcCcccCchHHHHHHHHHHHhcChhhhhcccCCHHHH
Confidence                                       555     778899999999999999999999999999999999999999999


Q ss_pred             HHHHhcCCCCCccEEEEecCceeeccCCCCCCCCCccccceeeeeecCCCCCCceeeEEeeccCCcccccCCcccccccc
Q psy14377        547 SEVLRNWPETDIRAIVVTDGERILGLGDLGAYGMGIPVGKLSLYTALAGIKPHQCLPITLDVGTNTQQLLDDPLYIGLRQ  626 (848)
Q Consensus       547 ~eiL~Nwp~~d~~viVVTDG~rILGLGDlG~~gmgIpvGKl~Ly~a~aGI~p~~~LPv~LDvGTnn~~ll~Dp~y~g~r~  626 (848)
                      +++++|||.+++++||||||||||||||+|++||+||+||++|||+||||||++|||||||+|||||+||+||+|+|+||
T Consensus       122 ~~~l~n~~~~~~~v~VVTDG~~ILGLGD~G~~g~~ipvGKl~Ly~~~aGIdP~~~lPI~LD~GTnn~~LL~DplYlG~r~  201 (555)
T 1gq2_A          122 ATMLQSWPESVIKAIVVTDGERILGLGDLGCYGMGIPVGKLALYTACGGVKPHQCLPVMLDVGTDNETLLKDPLYIGLRH  201 (555)
T ss_dssp             HHHHHTSSCSCCCEEEEECSSSCGGGCCCGGGGGHHHHHHHHHHHHTTCCCGGGEEEEEEESCCCCHHHHHCTTCCSCSS
T ss_pred             HHHHhcCCCCCcEEEEEEccccccccCCCCCCccccchhHHHHhHhccCCChhheeeeEeecCCCchhhcCCCccCCcCC
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             cCCCCcchhHHHHHHHHHHHHhhCCceeeeeecCCCcchHHHHHHHcccCceeccCCchHHHHHHHHHHHHHhhhCCcCC
Q psy14377        627 RRTTGQAYDDFIEEFMQAVVARYGQHVLIQFEDFANHSAFRFLDTYRNRYCVFNDDIQGTASVAVAGLLASLRITKTRLS  706 (848)
Q Consensus       627 ~R~~g~~y~~fvdefv~av~~~fGp~~~IqfEDf~~~naf~lL~ryr~~~~~FnDDiQGTaaV~LAgllaAlr~t~~~l~  706 (848)
                      +|++|++|++|+||||++++++|||+++||||||++||||++|+|||++||||||||||||+|+||||+||+|++|++|+
T Consensus       202 ~Rv~g~eyd~fvdefv~av~~~fGp~~~I~~EDf~~~~af~il~ryr~~ipvFnDDiqGTa~V~lAgllnAlki~gk~l~  281 (555)
T 1gq2_A          202 KRIRGQAYDDLLDEFMEAVTSRYGMNCLIQFEDFANANAFRLLHKYRNKYCTFNDDIQGTASVAVAGLLAALRITKNRLS  281 (555)
T ss_dssp             CCCCTHHHHHHHHHHHHHHHHHHCTTCEEEECSCCHHHHHHHHHHHTTTSEEEETTTHHHHHHHHHHHHHHHHHHTSCGG
T ss_pred             CCCchHHHHHHHHHHHHHHHHhhCCCcEEeecccCCccHHHHHHHHhccCCEecCccchHHHHHHHHHHHHHHHhCCChh
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CceEEecCcchhhHHHHHHHHHHHhcc----------ccccccc-CceecCCCCCCchH-HHhhhccc-cchhhccccCC
Q psy14377        707 DNTILFQGAGEGTASVAVAGLLASLRI----------TKTRLSD-NTILFQGAGEGTAS-VAIAGLLA-SLRITKTRLSD  773 (848)
Q Consensus       707 d~riv~~GAG~A~~g~giA~ll~~~~~----------~~~~~~d-~g~i~~~r~~~~~~-~~~~~~~~-~~r~~~~~~~~  773 (848)
                      ||||||+|||+|  |+|||+||+++|+          ++..++| +|+|+++|+. ++. +...+..+ ..++|++++++
T Consensus       282 d~riv~~GAGaA--g~gia~ll~~~~~~~G~~~eeA~~~i~~~D~~Gli~~~r~~-l~~~k~~~A~~~~~~~~L~eav~~  358 (555)
T 1gq2_A          282 DHTVLFQGAGEA--ALGIANLIVMAMQKEGVSKEEAIKRIWMVDSKGLIVKGRAS-LTPEKEHFAHEHCEMKNLEDIVKD  358 (555)
T ss_dssp             GCCEEEECCSHH--HHHHHHHHHHHHHHHTCCHHHHHTTEEEEETTEECBTTCSS-CCTTGGGGCBSCCCCCCHHHHHHH
T ss_pred             hcEEEEECCCHH--HHHHHHHHHHHHHHcCCChHHHhCcEEEEECCCeeeCCCCC-chHHHHHHHhhcCCCCCHHHHHhh
Confidence            999999999999  9999999999543          3556899 9999999974 554 55555555 35789999995


Q ss_pred             --CceEEeecC-CCcchh
Q psy14377        774 --NTILFQGSG-EGTASV  788 (848)
Q Consensus       774 --~~~~~~~s~-~~~~~~  788 (848)
                        +|+|+|+|+ .|+-+-
T Consensus       359 vkp~vlIG~S~~~g~ft~  376 (555)
T 1gq2_A          359 IKPTVLIGVAAIGGAFTQ  376 (555)
T ss_dssp             HCCSEEEECSCCTTCSCH
T ss_pred             cCCCEEEEecCCCCCCCH
Confidence              999999997 566543

>1o0s_A NAD-ME, NAD-dependent malic enzyme; oxidoreductase, oxidative decarboxylase, rossmann fold, MAla dehydrogenase; HET: NAI; 2.00A {Ascaris suum} SCOP: c.2.1.7 c.58.1.3 PDB: 1llq_A*

Probab=100.00  E-value=1.6e-102  Score=879.73  Aligned_cols=358  Identities=47%  Similarity=0.798  Sum_probs=335.3

Q ss_pred             CCcchhhh-hhhccccccHHHHhhhcccccCcccccchhHHHHHhhccccccCCChhhHHHHHHhhcccceeEEEeccCc
Q psy14377        307 APVKNLAD-VVKTGMAFSIEERQALGIHGLLPAAVKSQDEQLHLCKLNVDRYEDPLNKYIYLQALAVKTDIRAIVVTDGE  385 (848)
Q Consensus       307 ~~~~~l~~-~~n~g~~~~~~er~~~~~~G~~p~~v~~~~~q~~~~~~~~~~~~~~~~~~~~L~~l~~~~~~~~~~~~d~~  385 (848)
                      ++...|++ .+|||++||.+||+++|++|||||.|+|+|+|++||+.++++++++++||+||.+|+++          |+
T Consensus        38 ~G~~lL~~p~~NKGtAFt~~ER~~l~L~GLLPp~v~t~e~Q~~r~~~~~~~~~~~l~k~~~L~~L~~~----------Ne  107 (605)
T 1o0s_A           38 RSAELLKEPRLNKGMGFSLYERQYLGLHGLLPPAFMTQEQQAYRVITKLREQPNDLARYIQLDGLQDR----------NE  107 (605)
T ss_dssp             CHHHHHTCTTTCCGGGSCHHHHHHTTCTTTSCSCCCCHHHHHHHHHHHHHHSSSHHHHHHHHHHHHHH----------CH
T ss_pred             chHHHhCCCcccCCCCCCHHHHHHCCCCcCCCCCcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHhhcc----------cc
Confidence            45667777 89999999999999999999999999999999999999999999999999999999998          77


Q ss_pred             eecccccCCCCCCCcccccccHHHHHcCCCcCccCceeeEEccccccccCCCCCCCHHHHHHHHhcCCCceEEecCCCCC
Q psy14377        386 RILGLGDLGAYGMGIPVGKLSLYTALAGIKPHQCLPITLDVGTNWRRAAAIPQVFTADILKDMAAFNKRPIIFALSNPTS  465 (848)
Q Consensus       386 ~l~g~~~~g~~~~~~~~g~~~L~~al~g~kP~~~~~~~v~iG~~~~~~S~~~g~FTeevvk~Ma~~~~rPIIFaLSNPt~  465 (848)
                      +|                                                                              
T Consensus       108 ~L------------------------------------------------------------------------------  109 (605)
T 1o0s_A          108 KL------------------------------------------------------------------------------  109 (605)
T ss_dssp             HH------------------------------------------------------------------------------
T ss_pred             hh------------------------------------------------------------------------------
Confidence            66                                                                              


Q ss_pred             ccCCCHHHHhccCCCcEEEEeCCCCCCcccCCeEEecccchhhccCCeEecchhhhHHHhhccccccCccceeeccCc--
Q psy14377        466 KAECTAEQAYVNTDGRGVFASGSPFDPVTYKGKTFTPGQEYVVELMPIVYTPTVGLACQKYGLIFRRPRGLFISIHDK--  543 (848)
Q Consensus       466 ~~E~tpe~a~~~T~G~ai~AtGsPf~pv~y~g~~~~~~q~nn~e~lPvvYTPGVG~acl~~~~i~r~p~gm~L~~~d~--  543 (848)
                                                  ||+     +.+.|..++||++||||||++|+.++.+|++|+|||+|++|+  
T Consensus       110 ----------------------------fyr-----ll~~~~~e~lpivYTPtVg~ac~~~s~i~r~p~g~yis~~d~~~  156 (605)
T 1o0s_A          110 ----------------------------FYR-----VVCDHVKELMPIVYTPTVGLACQNFGYIYRKPKGLYITINDNSV  156 (605)
T ss_dssp             ----------------------------HHH-----HHHHTHHHHHHHHSTTHHHHHHHHHCSCCCCCCSEEEEGGGCSH
T ss_pred             ----------------------------hhh-----hhhhCHHHhCCeeeCccHHHHHHHHHHHhcChHhhhccccCccc
Confidence                                        555     778899999999999999999999999999999999999999  


Q ss_pred             ccHHHHHhcCCCCCccEEEEecCceeeccCCCCCCCCCccccceeeeeecCCCCCCceeeEEeeccCCcccccCCccccc
Q psy14377        544 GHISEVLRNWPETDIRAIVVTDGERILGLGDLGAYGMGIPVGKLSLYTALAGIKPHQCLPITLDVGTNTQQLLDDPLYIG  623 (848)
Q Consensus       544 g~i~eiL~Nwp~~d~~viVVTDG~rILGLGDlG~~gmgIpvGKl~Ly~a~aGI~p~~~LPv~LDvGTnn~~ll~Dp~y~g  623 (848)
                      ++++++|+|||.+++++||||||||||||||+|++||+||+||++|||+||||||++|||||||+|||||+||+||+|+|
T Consensus       157 ~~i~~~l~n~~~~~~~v~VVTDG~~ILGLGD~G~~g~~ipvGKl~Ly~~~aGIdP~~~lPI~LDvGTnne~LL~DPlYlG  236 (605)
T 1o0s_A          157 SKIYQILSNWHEEDVRAIVVTDGERILGLGDLGAYGIGIPVGKLALYVALGGVQPKWCLPVLLDVGTNNMDLLNDPFYIG  236 (605)
T ss_dssp             HHHHHHHTTSSCSCCCEEEEECSSCBTTTBCCGGGGGHHHHHHHHHHHHHHCCCGGGEEEEEEESCCCCHHHHHCTTCCS
T ss_pred             chHHHHHhcCCCCCceEEEEEccccceecCCCCCCcCcceeeHHHHHHhccCCChhheeeeEeccCCChhhhccCCcccC
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             ccccCCCCcchhHHHHHHHHHHHHhhCCceeeeeecCCCcchHHHHHHHcccCceeccCCchHHHHHHHHHHHHHhhhCC
Q psy14377        624 LRQRRTTGQAYDDFIEEFMQAVVARYGQHVLIQFEDFANHSAFRFLDTYRNRYCVFNDDIQGTASVAVAGLLASLRITKT  703 (848)
Q Consensus       624 ~r~~R~~g~~y~~fvdefv~av~~~fGp~~~IqfEDf~~~naf~lL~ryr~~~~~FnDDiQGTaaV~LAgllaAlr~t~~  703 (848)
                      +||+|++|++|++|+||||++++++|||+++||||||++||||++|+|||++||||||||||||+|+||||+||+|++|+
T Consensus       237 ~r~~Rv~g~~Yd~fvdefv~av~~~fGp~~~I~~EDf~~p~af~il~ryr~~ipvFnDDiqGTA~V~lAgllnAlki~gk  316 (605)
T 1o0s_A          237 LRHKRVRGKDYDTLLDNFMKACTKKYGQKTLIQFEDFANPNAFRLLDKYQDKYTMFNDDIQGTASVIVAGLLTCTRVTKK  316 (605)
T ss_dssp             CSSCCCCSHHHHHHHHHHHHHHHHHHCTTCEEEECSCCHHHHHHHHHHHTTTSEEEEHHHHHHHHHHHHHHHHHHHHHCC
T ss_pred             cCCCCCChHHHHHHHHHHHHHHHHHhCCCcEeeHhhcCCccHHHHHHHhccCCCeeCcccchHHHHHHHHHHHHHHHhCC
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             cCCCceEEecCcchhhHHHHHHHHHHHhcc----------ccccccc-CceecCCCCCCchH-HHhhhccc-cchhhccc
Q psy14377        704 RLSDNTILFQGAGEGTASVAVAGLLASLRI----------TKTRLSD-NTILFQGAGEGTAS-VAIAGLLA-SLRITKTR  770 (848)
Q Consensus       704 ~l~d~riv~~GAG~A~~g~giA~ll~~~~~----------~~~~~~d-~g~i~~~r~~~~~~-~~~~~~~~-~~r~~~~~  770 (848)
                      +|+||||||+|||+|  |+|||+||+++|+          ++..++| +|+|+++|+. ++. +...+..+ ..++|+++
T Consensus       317 ~l~d~riv~~GAGaA--gigia~ll~~~m~~~Gl~~eeA~~~i~~vD~~Gli~~~r~~-l~~~k~~~A~~~~~~~~L~ea  393 (605)
T 1o0s_A          317 LVSQEKYLFFGAGAA--STGIAEMIVHQMQNEGISKEEACNRIYLMDIDGLVTKNRKE-MNPRHVQFAKDMPETTSILEV  393 (605)
T ss_dssp             CGGGCCEEEECCSHH--HHHHHHHHHHHHHTTTCCHHHHHHTEEEEETTEECBTTCSS-CCGGGTTTCBSSCCCCCHHHH
T ss_pred             ChhhcEEEEECCCHH--HHHHHHHHHHHHHHcCCChhhhhCeEEEEECCCceeCCCCC-chHHHHHHHhhcCCCCCHHHH
Confidence            999999999999999  9999999999654          3456888 9999999974 554 55555555 35789999


Q ss_pred             cCC--CceEEeecC-CCcchh
Q psy14377        771 LSD--NTILFQGSG-EGTASV  788 (848)
Q Consensus       771 ~~~--~~~~~~~s~-~~~~~~  788 (848)
                      +++  +|+|+|+|+ .|+-+-
T Consensus       394 v~~vkpdVlIG~S~~~g~ft~  414 (605)
T 1o0s_A          394 IRAARPGALIGASTVRGAFNE  414 (605)
T ss_dssp             HHHHCCSEEEECSSCTTCSCH
T ss_pred             HhhcCCCEEEEecCCCCCCCH
Confidence            995  999999997 566543

>1o0s_A NAD-ME, NAD-dependent malic enzyme; oxidoreductase, oxidative decarboxylase, rossmann fold, MAla dehydrogenase; HET: NAI; 2.00A {Ascaris suum} SCOP: c.2.1.7 c.58.1.3 PDB: 1llq_A*

Probab=100.00  E-value=3.4e-68  Score=600.71  Aligned_cols=253  Identities=33%  Similarity=0.521  Sum_probs=232.0

Q ss_pred             cccccCCCCCCCCccccccccccchhhhhHHhhhcCCCCeE---EEchhhHHHHHHHHHHHHHhCCcCCCceEEEeccch
Q psy14377        174 KGLIVKDRPEGGVTGHKVHYAKKHAPVKNLADVVKTVKPSI---LIGESCVNDVAGLLASLRITKTRLSDNTILFQGAGE  250 (848)
Q Consensus       174 ~G~lYPkppd~gIr~edIavAk~fe~ek~Lle~lr~~iPvF---qhGTA~V~~lAgll~Al~~tg~~l~d~riv~~GAGa  250 (848)
                      .-..|+  ++..|++||++.++||++++    +|++.+|+|   |||||+|+ ||||+||+|++|++|+||||||+|||+
T Consensus       258 v~~~fG--p~~~I~~EDf~~p~af~il~----ryr~~ipvFnDDiqGTA~V~-lAgllnAlki~gk~l~d~riv~~GAGa  330 (605)
T 1o0s_A          258 CTKKYG--QKTLIQFEDFANPNAFRLLD----KYQDKYTMFNDDIQGTASVI-VAGLLTCTRVTKKLVSQEKYLFFGAGA  330 (605)
T ss_dssp             HHHHHC--TTCEEEECSCCHHHHHHHHH----HHTTTSEEEEHHHHHHHHHH-HHHHHHHHHHHCCCGGGCCEEEECCSH
T ss_pred             HHHHhC--CCcEeeHhhcCCccHHHHHH----HhccCCCeeCcccchHHHHH-HHHHHHHHHHhCCChhhcEEEEECCCH
Confidence            344453  56679999999999999988    555689999   99999999 999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHhcCCChhhhcCcEEEEcCCCcccCCCCCCCCCccccccccccCCcchhhhhhhccccccHHHHhhh
Q psy14377        251 ASLGIADLCVMAMQKEGTSEQDARDKIWMVDSKGLIVKDRPEGGVTGHKVHYAKKHAPVKNLADVVKTGMAFSIEERQAL  330 (848)
Q Consensus       251 Ag~gia~ll~~~m~~~G~s~~eA~~~i~~vD~kGLi~~~r~~~~l~~~k~~~a~~~~~~~~l~~~~n~g~~~~~~er~~~  330 (848)
                      ||+|||+||+.+|+++|+|++||+++|||||++|||+++|++  |+++|.+||+++++.                     
T Consensus       331 Agigia~ll~~~m~~~Gl~~eeA~~~i~~vD~~Gli~~~r~~--l~~~k~~~A~~~~~~---------------------  387 (605)
T 1o0s_A          331 ASTGIAEMIVHQMQNEGISKEEACNRIYLMDIDGLVTKNRKE--MNPRHVQFAKDMPET---------------------  387 (605)
T ss_dssp             HHHHHHHHHHHHHHTTTCCHHHHHHTEEEEETTEECBTTCSS--CCGGGTTTCBSSCCC---------------------
T ss_pred             HHHHHHHHHHHHHHHcCCChhhhhCeEEEEECCCceeCCCCC--chHHHHHHHhhcCCC---------------------
Confidence            999999999999999999999999999999999999999974  999999999864210                     


Q ss_pred             cccccCcccccchhHHHHHhhccccccCCChhhHHHHHHhhcccceeEEEeccCceecccccCCCCCCCcccccccHHHH
Q psy14377        331 GIHGLLPAAVKSQDEQLHLCKLNVDRYEDPLNKYIYLQALAVKTDIRAIVVTDGERILGLGDLGAYGMGIPVGKLSLYTA  410 (848)
Q Consensus       331 ~~~G~~p~~v~~~~~q~~~~~~~~~~~~~~~~~~~~L~~l~~~~~~~~~~~~d~~~l~g~~~~g~~~~~~~~g~~~L~~a  410 (848)
                                                                                                -+|.+|
T Consensus       388 --------------------------------------------------------------------------~~L~ea  393 (605)
T 1o0s_A          388 --------------------------------------------------------------------------TSILEV  393 (605)
T ss_dssp             --------------------------------------------------------------------------CCHHHH
T ss_pred             --------------------------------------------------------------------------CCHHHH
Confidence                                                                                      047788


Q ss_pred             HcCCCcCccCceeeEEccccccccCCCCCCCHHHHHHHHhcCCCceEEecCCCCCccCCCHHHHhccCCCcEEEEeCCCC
Q psy14377        411 LAGIKPHQCLPITLDVGTNWRRAAAIPQVFTADILKDMAAFNKRPIIFALSNPTSKAECTAEQAYVNTDGRGVFASGSPF  490 (848)
Q Consensus       411 l~g~kP~~~~~~~v~iG~~~~~~S~~~g~FTeevvk~Ma~~~~rPIIFaLSNPt~~~E~tpe~a~~~T~G~ai~AtGsPf  490 (848)
                      ++++||      |||||+     |++||+|||||||+||++|+|||||||||||+++||+||||++||+|+|||||||||
T Consensus       394 v~~vkp------dVlIG~-----S~~~g~ft~evv~~Ma~~~~~PIIFaLSNPt~~aE~~pe~a~~~t~G~aivATGspF  462 (605)
T 1o0s_A          394 IRAARP------GALIGA-----STVRGAFNEEVIRAMAEINERPIIFALSNPTSKAECTAEEAYTFTNGAALYASGSPF  462 (605)
T ss_dssp             HHHHCC------SEEEEC-----SSCTTCSCHHHHHHHHHHCSSCEEEECCSSGGGCSSCHHHHHHTTTSCCEEEESSCC
T ss_pred             HhhcCC------CEEEEe-----cCCCCCCCHHHHHHHHhcCCCCEEEECCCCCCCcCcCHHHHHhhccCCEEEEECCCC
Confidence            999999      788997     899999999999999999999999999999999999999999999999999999999


Q ss_pred             CCcccCCeEEecccchhhccCCeEecchhhhHHHhhccccccCccceeeccCcccHHHHHhcC
Q psy14377        491 DPVTYKGKTFTPGQEYVVELMPIVYTPTVGLACQKYGLIFRRPRGLFISIHDKGHISEVLRNW  553 (848)
Q Consensus       491 ~pv~y~g~~~~~~q~nn~e~lPvvYTPGVG~acl~~~~i~r~p~gm~L~~~d~g~i~eiL~Nw  553 (848)
                      +||+|+||+++|+|+||++     .|||+|+|++.+++. +++++|+++      ..+.|++.
T Consensus       463 ~pV~~~Grs~~pnQ~NN~l-----iFPGi~lGal~~~A~-~Itd~M~~a------AA~aLA~~  513 (605)
T 1o0s_A          463 PNFELNGHTYKPGQGNNAY-----IFPGVALGTILFQIR-HVDNDLFLL------AAKKVASC  513 (605)
T ss_dssp             CCEEETTEEECCEECCGGG-----THHHHHHHHHHHTBS-CCCHHHHHH------HHHHHHHT
T ss_pred             CCeeECCEEecccccccee-----eccchhhhhhhcCCe-EcCHHHHHH------HHHHHHhh
Confidence            9999999999999999995     479999999999985 799999997      77888876

>1gq2_A Malic enzyme; oxidoreductase, pigeon liver, NADP-dependent, NAD-NADP selectivity, decarboxylase, malate, Mn2+; HET: NAP; 2.5A {Columba livia} SCOP: c.2.1.7 c.58.1.3 PDB: 2aw5_A

Probab=100.00  E-value=8.9e-68  Score=594.34  Aligned_cols=320  Identities=43%  Similarity=0.568  Sum_probs=267.6

Q ss_pred             ccccccccCC--cccccccc---CCc------------Ccc----CCcCccceeeec----ccChhhHHHH-H--Hhhcc
Q psy14377        107 QRDFLSSWLN--RGPCLNCW---GKR------------DFE----QDKQGISYSIHA----SLGIADLCVM-A--MQKEG  158 (848)
Q Consensus       107 ~~piifA~sn--~~~~i~at---G~~------------~fd----ypnQ~Nnv~vfp----~Lgl~~m~~~-A--~~ala  158 (848)
                      ++.+.++|+|  +.+|...+   -+|            .++    .|.+.|-|+|++    .|||+|+++. +  +.+|+
T Consensus        83 ~e~lpivYTP~V~~ac~~~s~i~~~p~g~yis~~d~~~i~~~l~n~~~~~~~v~VVTDG~~ILGLGD~G~~g~~ipvGKl  162 (555)
T 1gq2_A           83 ERFMPIVYTPTVGLACQHYGLAFRRPRGLFITIHDRGHIATMLQSWPESVIKAIVVTDGERILGLGDLGCYGMGIPVGKL  162 (555)
T ss_dssp             HHHHHHHSTTHHHHHHHTHHHHCSSCCSEEEEGGGTTCHHHHHHTSSCSCCCEEEEECSSSCGGGCCCGGGGGHHHHHHH
T ss_pred             HHhcCcccCchHHHHHHHHHHHhcChhhhhcccCCHHHHHHHHhcCCCCCcEEEEEEccccccccCCCCCCccccchhHH
Confidence            4678899999  66665533   222            111    356779999999    7899888872 2  12222


Q ss_pred             C------------------Ch---hhHhhh---------------------hhcccccccccCCCCCCCCcccccccccc
Q psy14377        159 T------------------SE---QDARDK---------------------IWMVDSKGLIVKDRPEGGVTGHKVHYAKK  196 (848)
Q Consensus       159 ~------------------~v---~d~~~~---------------------ay~~~~~G~lYPkppd~gIr~edIavAk~  196 (848)
                      .                  .+   .++-++                     +.+|+..-..|+  ++..|++||++.++|
T Consensus       163 ~Ly~~~aGIdP~~~lPI~LD~GTnn~~LL~DplYlG~r~~Rv~g~eyd~fvdefv~av~~~fG--p~~~I~~EDf~~~~a  240 (555)
T 1gq2_A          163 ALYTACGGVKPHQCLPVMLDVGTDNETLLKDPLYIGLRHKRIRGQAYDDLLDEFMEAVTSRYG--MNCLIQFEDFANANA  240 (555)
T ss_dssp             HHHHHTTCCCGGGEEEEEEESCCCCHHHHHCTTCCSCSSCCCCTHHHHHHHHHHHHHHHHHHC--TTCEEEECSCCHHHH
T ss_pred             HHhHhccCCChhheeeeEeecCCCchhhcCCCccCCcCCCCCchHHHHHHHHHHHHHHHHhhC--CCcEEeecccCCccH
Confidence            1                  11   011111                     122333444454  566799999999999


Q ss_pred             chhhhhHHhhhcCCCCeE---EEchhhHHHHHHHHHHHHHhCCcCCCceEEEeccchHHHHHHHHHHHHHHhcCCChhhh
Q psy14377        197 HAPVKNLADVVKTVKPSI---LIGESCVNDVAGLLASLRITKTRLSDNTILFQGAGEASLGIADLCVMAMQKEGTSEQDA  273 (848)
Q Consensus       197 fe~ek~Lle~lr~~iPvF---qhGTA~V~~lAgll~Al~~tg~~l~d~riv~~GAGaAg~gia~ll~~~m~~~G~s~~eA  273 (848)
                      |++++    +|++.+|+|   |||||+|+ ||||+||+|++|++|+||||||+|||+||+|||+||+.+|+++|+|++||
T Consensus       241 f~il~----ryr~~ipvFnDDiqGTa~V~-lAgllnAlki~gk~l~d~riv~~GAGaAg~gia~ll~~~~~~~G~~~eeA  315 (555)
T 1gq2_A          241 FRLLH----KYRNKYCTFNDDIQGTASVA-VAGLLAALRITKNRLSDHTVLFQGAGEAALGIANLIVMAMQKEGVSKEEA  315 (555)
T ss_dssp             HHHHH----HHTTTSEEEETTTHHHHHHH-HHHHHHHHHHHTSCGGGCCEEEECCSHHHHHHHHHHHHHHHHHTCCHHHH
T ss_pred             HHHHH----HHhccCCEecCccchHHHHH-HHHHHHHHHHhCCChhhcEEEEECCCHHHHHHHHHHHHHHHHcCCChHHH
Confidence            99988    556689999   99999999 99999999999999999999999999999999999999999999999999


Q ss_pred             cCcEEEEcCCCcccCCCCCCCCCccccccccccCCcchhhhhhhccccccHHHHhhhcccccCcccccchhHHHHHhhcc
Q psy14377        274 RDKIWMVDSKGLIVKDRPEGGVTGHKVHYAKKHAPVKNLADVVKTGMAFSIEERQALGIHGLLPAAVKSQDEQLHLCKLN  353 (848)
Q Consensus       274 ~~~i~~vD~kGLi~~~r~~~~l~~~k~~~a~~~~~~~~l~~~~n~g~~~~~~er~~~~~~G~~p~~v~~~~~q~~~~~~~  353 (848)
                      +++|||||++|||+++|++  ++++|.+||+++++.                                            
T Consensus       316 ~~~i~~~D~~Gli~~~r~~--l~~~k~~~A~~~~~~--------------------------------------------  349 (555)
T 1gq2_A          316 IKRIWMVDSKGLIVKGRAS--LTPEKEHFAHEHCEM--------------------------------------------  349 (555)
T ss_dssp             HTTEEEEETTEECBTTCSS--CCTTGGGGCBSCCCC--------------------------------------------
T ss_pred             hCcEEEEECCCeeeCCCCC--chHHHHHHHhhcCCC--------------------------------------------
Confidence            9999999999999999974  999999999864210                                            


Q ss_pred             ccccCCChhhHHHHHHhhcccceeEEEeccCceecccccCCCCCCCcccccccHHHHHcCCCcCccCceeeEEccccccc
Q psy14377        354 VDRYEDPLNKYIYLQALAVKTDIRAIVVTDGERILGLGDLGAYGMGIPVGKLSLYTALAGIKPHQCLPITLDVGTNWRRA  433 (848)
Q Consensus       354 ~~~~~~~~~~~~~L~~l~~~~~~~~~~~~d~~~l~g~~~~g~~~~~~~~g~~~L~~al~g~kP~~~~~~~v~iG~~~~~~  433 (848)
                                                                         -+|.+|++++||      |||||+     
T Consensus       350 ---------------------------------------------------~~L~eav~~vkp------~vlIG~-----  367 (555)
T 1gq2_A          350 ---------------------------------------------------KNLEDIVKDIKP------TVLIGV-----  367 (555)
T ss_dssp             ---------------------------------------------------CCHHHHHHHHCC------SEEEEC-----
T ss_pred             ---------------------------------------------------CCHHHHHhhcCC------CEEEEe-----
Confidence                                                               047788999999      788997     


Q ss_pred             cCCCCCCCHHHHHHHHhcCCCceEEecCCCCCccCCCHHHHhccCCCcEEEEeCCCCCCccc-CCeEEecccchhhccCC
Q psy14377        434 AAIPQVFTADILKDMAAFNKRPIIFALSNPTSKAECTAEQAYVNTDGRGVFASGSPFDPVTY-KGKTFTPGQEYVVELMP  512 (848)
Q Consensus       434 S~~~g~FTeevvk~Ma~~~~rPIIFaLSNPt~~~E~tpe~a~~~T~G~ai~AtGsPf~pv~y-~g~~~~~~q~nn~e~lP  512 (848)
                      |++||+|||||||+|+++|+|||||||||||+++||+||||++||+|+|||||||||+||+| +||+++|+|+||++   
T Consensus       368 S~~~g~ft~evv~~Ma~~~~~PIIFaLSNPt~~aE~~pe~a~~~t~G~aivATGspf~pv~~~~Grs~~pnQ~NN~l---  444 (555)
T 1gq2_A          368 AAIGGAFTQQILQDMAAFNKRPIIFALSNPTSKAECTAEQLYKYTEGRGIFASGSPFDPVTLPSGQTLYPGQGNNSY---  444 (555)
T ss_dssp             SCCTTCSCHHHHHHHHHHCSSCEEEECCSSGGGCSSCHHHHHHHTTTCCEEEESSCCCCEECTTSCEECCEECCGGG---
T ss_pred             cCCCCCCCHHHHHHHHhcCCCCEEEECCCCCCccCcCHHHHHHhccCCEEEEeCCCCCCeeecCCcEecccccccee---
Confidence            88999999999999999999999999999999999999999999999999999999999999 99999999999995   


Q ss_pred             eEecchhhhHHHhhccccccCccceeeccCcccHHHHHhcC
Q psy14377        513 IVYTPTVGLACQKYGLIFRRPRGLFISIHDKGHISEVLRNW  553 (848)
Q Consensus       513 vvYTPGVG~acl~~~~i~r~p~gm~L~~~d~g~i~eiL~Nw  553 (848)
                        .|||+|+|++.+++. +++++|+++      ..+.|++.
T Consensus       445 --iFPGi~~Gal~~~A~-~Itd~M~~a------AA~alA~~  476 (555)
T 1gq2_A          445 --VFPGVALGVISCGLK-HIGDDVFLT------TAEVIAQE  476 (555)
T ss_dssp             --THHHHHHHHHHHTCS-SCCHHHHHH------HHHHHHHT
T ss_pred             --eccchhhhhHhcCCe-ECCHHHHHH------HHHHHHhc
Confidence              479999999999985 799999997      77888876

>1pj3_A NAD-dependent malic enzyme, mitochondrial; oxidative decarboxylase, oxidoreductase; HET: NAD; 2.10A {Homo sapiens} SCOP: c.2.1.7 c.58.1.3 PDB: 1pj2_A* 1do8_A* 1pj4_A* 1qr6_A* 1efl_A* 1pjl_A* 1efk_A* 1gz4_A* 1gz3_A*

Probab=100.00  E-value=9.4e-68  Score=595.65  Aligned_cols=323  Identities=32%  Similarity=0.461  Sum_probs=269.8

Q ss_pred             ccccccccCC--ccccccc---cCCc--Cc--------------cCCcCccceeeec----ccChhhHHHHHH-h--hcc
Q psy14377        107 QRDFLSSWLN--RGPCLNC---WGKR--DF--------------EQDKQGISYSIHA----SLGIADLCVMAM-Q--KEG  158 (848)
Q Consensus       107 ~~piifA~sn--~~~~i~a---tG~~--~f--------------dypnQ~Nnv~vfp----~Lgl~~m~~~A~-~--ala  158 (848)
                      ++.+.++|+|  +.+|...   --+|  .|              .+|.+.|-|+|++    .|||+|+++.++ -  +|+
T Consensus        85 ~e~lpivYTP~Vg~ac~~~s~i~~~p~g~ylsi~d~~~i~~~l~n~~~~~v~v~VVTDG~~ILGLGD~G~~gm~ipvGKl  164 (564)
T 1pj3_A           85 ESLMPIVYTPTVGLACSQYGHIFRRPKGLFISISDRGHVRSIVDNWPENHVKAVVVTDGERILGLGDLGVYGMGIPVGKL  164 (564)
T ss_dssp             HHHHHHHSTTHHHHHHHTHHHHCSSCCSEEEEGGGTTCHHHHHTTCSCSCCCEEEEECSSSCTTSCCCGGGGGHHHHHHH
T ss_pred             HHhCCeeeCccHHHHHHHHHHHhcCcccccccccCHHHHHHHHHhCCCCCceEEEEEcccccccCCCCCCCcccceehHH
Confidence            4568889999  6666542   2222  22              2688899999999    799988888762 1  111


Q ss_pred             C--------C----------h--------hh----------------HhhhhhcccccccccCCCCCCCCcccccccccc
Q psy14377        159 T--------S----------E--------QD----------------ARDKIWMVDSKGLIVKDRPEGGVTGHKVHYAKK  196 (848)
Q Consensus       159 ~--------~----------v--------~d----------------~~~~ay~~~~~G~lYPkppd~gIr~edIavAk~  196 (848)
                      .        .          +        .|                ....+.+|+..-..|+  ++..|++||++.++|
T Consensus       165 ~Ly~~~aGIdP~~~lPI~lDvgTnn~~LL~DPlYlG~r~~Rv~g~eYd~fvdefv~av~~~fG--~~~~I~~EDf~~~~a  242 (564)
T 1pj3_A          165 CLYTACAGIRPDRCLPVCIDVGTDNIALLKDPFYMGLYQKRDRTQQYDDLIDEFMKAITDRYG--RNTLIQFEDFGNHNA  242 (564)
T ss_dssp             HHHHHHHCCCGGGEEEEEEESCCCCTTGGGCTTCCSCSSCCCCSHHHHHHHHHHHHHHHHHHC--TTCEEEECSCCHHHH
T ss_pred             HHHHhccCCChhheeeeEeecCcCchhhccCCcccCcCCCCCchhhHHHHHHHHHHHHHHHcC--CCcEEeehhcCCccH
Confidence            0        0          1        01                0001122333333444  555699999999999


Q ss_pred             chhhhhHHhhhcCCCCeE---EEchhhHHHHHHHHHHHHHhCCcCCCceEEEeccchHHHHHHHHHHHHHHhcCCChhhh
Q psy14377        197 HAPVKNLADVVKTVKPSI---LIGESCVNDVAGLLASLRITKTRLSDNTILFQGAGEASLGIADLCVMAMQKEGTSEQDA  273 (848)
Q Consensus       197 fe~ek~Lle~lr~~iPvF---qhGTA~V~~lAgll~Al~~tg~~l~d~riv~~GAGaAg~gia~ll~~~m~~~G~s~~eA  273 (848)
                      |++++    +|++++|+|   |||||+|+ ||||+||+|++|++|+||||||+|||+||+|||+||+.+|+++|+|++||
T Consensus       243 f~il~----ryr~~ipvFnDDiqGTa~V~-lAgllnAlki~gk~l~d~riv~~GAGaAgigia~ll~~~m~~~Gl~~eeA  317 (564)
T 1pj3_A          243 FRFLR----KYREKYCTFNDDIQGTAAVA-LAGLLAAQKVISKPISEHKILFLGAGEAALGIANLIVMSMVENGLSEQEA  317 (564)
T ss_dssp             HHHHH----HHTTTSSEEEHHHHHHHHHH-HHHHHHHHHHHCCCGGGCCEEEECCSHHHHHHHHHHHHHHHHTTCCHHHH
T ss_pred             HHHHH----HhccCCCEeCCCCchHHHHH-HHHHHHHHHHhCCcHhHcEEEEeCCCHHHHHHHHHHHHHHHHcCCChHHh
Confidence            99988    556689999   99999999 99999999999999999999999999999999999999999999999999


Q ss_pred             cCcEEEEcCCCcccCCCCCCCCCccccccccccCCcchhhhhhhccccccHHHHhhhcccccCcccccchhHHHHHhhcc
Q psy14377        274 RDKIWMVDSKGLIVKDRPEGGVTGHKVHYAKKHAPVKNLADVVKTGMAFSIEERQALGIHGLLPAAVKSQDEQLHLCKLN  353 (848)
Q Consensus       274 ~~~i~~vD~kGLi~~~r~~~~l~~~k~~~a~~~~~~~~l~~~~n~g~~~~~~er~~~~~~G~~p~~v~~~~~q~~~~~~~  353 (848)
                      +++|||||++|||+++|.+ +++++|.+||+++++..                                           
T Consensus       318 ~~~i~~~D~~Gli~~~r~~-~l~~~k~~~A~~~~~~~-------------------------------------------  353 (564)
T 1pj3_A          318 QKKIWMFDKYGLLVKGRKA-KIDSYQEPFTHSAPESI-------------------------------------------  353 (564)
T ss_dssp             HHTEEEEETTEECBTTCSS-CCCTTTGGGCBCCCSSC-------------------------------------------
T ss_pred             hCcEEEEeCCCeEECCCcc-cchHHHHHHHHhcCccc-------------------------------------------
Confidence            9999999999999999933 49999999998653200                                           


Q ss_pred             ccccCCChhhHHHHHHhhcccceeEEEeccCceecccccCCCCCCCcccccccHHHHHcCCCcCccCceeeEEccccccc
Q psy14377        354 VDRYEDPLNKYIYLQALAVKTDIRAIVVTDGERILGLGDLGAYGMGIPVGKLSLYTALAGIKPHQCLPITLDVGTNWRRA  433 (848)
Q Consensus       354 ~~~~~~~~~~~~~L~~l~~~~~~~~~~~~d~~~l~g~~~~g~~~~~~~~g~~~L~~al~g~kP~~~~~~~v~iG~~~~~~  433 (848)
                                                                        +.+|.+|++++||      |||||+     
T Consensus       354 --------------------------------------------------~~~L~eav~~vkp------~vlIG~-----  372 (564)
T 1pj3_A          354 --------------------------------------------------PDTFEDAVNILKP------STIIGV-----  372 (564)
T ss_dssp             --------------------------------------------------CSSHHHHHHHHCC------SEEEEC-----
T ss_pred             --------------------------------------------------cCCHHHHHhhcCC------CEEEEe-----
Confidence                                                              1147889999999      788997     


Q ss_pred             cCCCCCCCHHHHHHHHhcCCCceEEecCCCCCccCCCHHHHhccCCCcEEEEeCCCCCCccc-CCeEEecccchhhccCC
Q psy14377        434 AAIPQVFTADILKDMAAFNKRPIIFALSNPTSKAECTAEQAYVNTDGRGVFASGSPFDPVTY-KGKTFTPGQEYVVELMP  512 (848)
Q Consensus       434 S~~~g~FTeevvk~Ma~~~~rPIIFaLSNPt~~~E~tpe~a~~~T~G~ai~AtGsPf~pv~y-~g~~~~~~q~nn~e~lP  512 (848)
                      |++||+|||||||+|+++|+|||||||||||+++||+||||++||+|+|||||||||+||+| +||+|+|+|+||++   
T Consensus       373 S~~~g~ft~evv~~Ma~~~~~PIIFaLSNPt~~aE~~pe~a~~~t~G~aivATGspf~pv~~~~G~~~~pnQ~NN~l---  449 (564)
T 1pj3_A          373 AGAGRLFTPDVIRAMASINERPVIFALSNPTAQAECTAEEAYTLTEGRCLFASGSPFGPVKLTDGRVFTPGQGNNVY---  449 (564)
T ss_dssp             CCSSCCSCHHHHHHHHHHCSSCEEEECCSSGGGCSCCHHHHHHHTTTCCEEEESSCCCCEECTTSCEECCEECCGGG---
T ss_pred             CCCCCCCCHHHHHHHHhcCCCCEEEECCCCCCccCcCHHHHHhhccCCEEEEeCCCCCceeecCCceecccccceee---
Confidence            89999999999999999999999999999999999999999999999999999999999999 99999999999995   


Q ss_pred             eEecchhhhHHHhhccccccCccceeeccCcccHHHHHhcC
Q psy14377        513 IVYTPTVGLACQKYGLIFRRPRGLFISIHDKGHISEVLRNW  553 (848)
Q Consensus       513 vvYTPGVG~acl~~~~i~r~p~gm~L~~~d~g~i~eiL~Nw  553 (848)
                        .|||+|+|++.+++. +++++|+++      ..+.|++.
T Consensus       450 --iFPGi~~Gal~~~A~-~Itd~M~~a------AA~aLA~~  481 (564)
T 1pj3_A          450 --IFPGVALAVILCNTR-HISDSVFLE------AAKALTSQ  481 (564)
T ss_dssp             --THHHHHHHHHHTTCS-CCCHHHHHH------HHHHHHTT
T ss_pred             --eccchhhhhHhcCCe-ECCHHHHHH------HHHHHHhh
Confidence              479999999999985 799999997      77888886

>3nv9_A Malic enzyme; rossmann fold, oxidoreductase; 2.25A {Entamoeba histolytica}

Probab=100.00  E-value=6.6e-63  Score=546.44  Aligned_cols=237  Identities=27%  Similarity=0.361  Sum_probs=209.1

Q ss_pred             ccchhhccCCeEecchhhhHHHhhccccccCccceeeccCcccHHHHHhcCCCCCccEEEEecCceeeccCCCCC-CCCC
Q psy14377        503 GQEYVVELMPIVYTPTVGLACQKYGLIFRRPRGLFISIHDKGHISEVLRNWPETDIRAIVVTDGERILGLGDLGA-YGMG  581 (848)
Q Consensus       503 ~q~nn~e~lPvvYTPGVG~acl~~~~i~r~p~gm~L~~~d~g~i~eiL~Nwp~~d~~viVVTDG~rILGLGDlG~-~gmg  581 (848)
                      ...+|.++||++|||||+++|+.+.             +|+++++++..+|+    +++|||||||||||||+|+ +||+
T Consensus        53 ~~~~~~~dLslaYTPgVa~~c~~i~-------------~dp~~~~~yt~kgn----~VaVVTDG~aILGLGDiG~~agmp  115 (487)
T 3nv9_A           53 CTLAGFNWFNAYYTPGVSRISTNIR-------------DNNDSSLFYSLRGN----FVGVVSDSTRVLGDGDVTPPGGLG  115 (487)
T ss_dssp             SCCSSGGGHHHHSTTTHHHHHHHHH-------------HCGGGHHHHSGGGG----EEEEEECSSSBGGGBCCCGGGGHH
T ss_pred             CCCCCHHHCeeeeCcchHHHHHHHH-------------hChHHHhhhcccCC----EEEEEEcCceeeeccccccccCCc
Confidence            3467889999999999999999943             45667777777775    6999999999999999999 5899


Q ss_pred             ccccceeeeeecCCCCCCceeeEEeeccCCcccccCCcccccccccCCCCcchhHHHHHHHHHHHHhhCCceeeeeecCC
Q psy14377        582 IPVGKLSLYTALAGIKPHQCLPITLDVGTNTQQLLDDPLYIGLRQRRTTGQAYDDFIEEFMQAVVARYGQHVLIQFEDFA  661 (848)
Q Consensus       582 IpvGKl~Ly~a~aGI~p~~~LPv~LDvGTnn~~ll~Dp~y~g~r~~R~~g~~y~~fvdefv~av~~~fGp~~~IqfEDf~  661 (848)
                      ||+||++|||+|||||   |||||||+||+|  +++||               ++|+ |||+++.++||.   ||||||+
T Consensus       116 ImeGKl~Lyk~~aGId---~lPI~LD~gt~~--~~~d~---------------defv-e~v~~~~P~fG~---InlEDf~  171 (487)
T 3nv9_A          116 VMEGKALLMKYLGGID---AVPICIDSKNKE--GKNDP---------------DAVI-EFVQRIQHTFGA---INLEDIS  171 (487)
T ss_dssp             HHHHHHHHHHHHHCCE---EEEEECCCBCTT--SCBCH---------------HHHH-HHHHHHGGGCSE---EEECSCC
T ss_pred             hhhhHHHHHHhcCCCc---eeeeEEeCCCcc--ccCCH---------------HHHH-HHHHHhCCCCCe---ecHhhcC
Confidence            9999999999999999   999999999755  46675               7765 799999999987   9999999


Q ss_pred             CcchHHHHHHHcc--cCceeccCCchHHHHHHHHHHHHHhhhCCcCCCceEEecCcchhhHHHHHHHHHHHhcc--cccc
Q psy14377        662 NHSAFRFLDTYRN--RYCVFNDDIQGTASVAVAGLLASLRITKTRLSDNTILFQGAGEGTASVAVAGLLASLRI--TKTR  737 (848)
Q Consensus       662 ~~naf~lL~ryr~--~~~~FnDDiQGTaaV~LAgllaAlr~t~~~l~d~riv~~GAG~A~~g~giA~ll~~~~~--~~~~  737 (848)
                      +||||++|+|||+  +||||||||||||+|+||||+||+|++|++|+|+||||+|||+|  |+|||+||+..++  ++..
T Consensus       172 ap~af~il~ryr~~~~ipvFnDD~qGTA~V~lAgllnAlki~gk~l~d~riV~~GAGaA--Gigia~ll~~~G~~~~~i~  249 (487)
T 3nv9_A          172 QPNCYKILDVLRESCDIPVWHDDQQGTASVTLAGLLNALKLVKKDIHECRMVFIGAGSS--NTTCLRLIVTAGADPKKIV  249 (487)
T ss_dssp             TTHHHHHHHHHHHHCSSCEEETTTHHHHHHHHHHHHHHHHHHTCCGGGCCEEEECCSHH--HHHHHHHHHHTTCCGGGEE
T ss_pred             CchHHHHHHHHHhhccCCccccccchHHHHHHHHHHHHHHHhCCChhhcEEEEECCCHH--HHHHHHHHHHcCCCcccEE
Confidence            9999999999999  58999999999999999999999999999999999999999999  9999999999999  6778


Q ss_pred             ccc-CceecCCCCCCc-----hHH-Hhhhccc---cchhhccccCCCceEEeecCC
Q psy14377        738 LSD-NTILFQGAGEGT-----ASV-AIAGLLA---SLRITKTRLSDNTILFQGSGE  783 (848)
Q Consensus       738 ~~d-~g~i~~~r~~~~-----~~~-~~~~~~~---~~r~~~~~~~~~~~~~~~s~~  783 (848)
                      ++| +|+|+++|+. +     +++ ....-.|   ..++|+++++++|+|+|+|..
T Consensus       250 l~D~~Gli~~~R~~-l~~~~~~~~k~~~A~~~n~~~~~~L~eav~~adVlIG~S~~  304 (487)
T 3nv9_A          250 MFDSKGSLHNGRED-IKKDTRFYRKWEICETTNPSKFGSIAEACVGADVLISLSTP  304 (487)
T ss_dssp             EEETTEECCTTCHH-HHHCGGGHHHHHHHHHSCTTCCCSHHHHHTTCSEEEECCCS
T ss_pred             EEeccccccCCcch-hhhhcccHHHHHHHHhcccccCCCHHHHHhcCCEEEEeccc
Confidence            999 9999999953 3     222 2222333   578999999999999999944

>3nv9_A Malic enzyme; rossmann fold, oxidoreductase; 2.25A {Entamoeba histolytica}

Probab=100.00  E-value=9.8e-58  Score=505.27  Aligned_cols=337  Identities=20%  Similarity=0.198  Sum_probs=259.4

Q ss_pred             CChhhhhhcccCCCCCCHHHHhccc-CCCchhh--hhccC-CccccccccCC--ccccccccCCc--CccCCcCccceee
Q psy14377         69 VTGHKVHYAKKHAPVKNLADVVKTV-KPSILIE--ELKGL-SQRDFLSSWLN--RGPCLNCWGKR--DFEQDKQGISYSI  140 (848)
Q Consensus        69 l~~~k~~~a~~~~~~~tL~ea~~~s-~~~v~~g--~vk~M-~~~piifA~sn--~~~~i~atG~~--~fdypnQ~Nnv~v  140 (848)
                      +++.++.-|++. .  --++|++.. ++.=.++  --+++ +++++.++|+|  +.+|..+.-+|  .|+|++++|.|+|
T Consensus        19 ~~~~~~~~~~~~-~--~~~~al~~h~~~~GKi~v~~~~~~~~~~dLslaYTPgVa~~c~~i~~dp~~~~~yt~kgn~VaV   95 (487)
T 3nv9_A           19 LSQEQRAVAKTQ-F--YKELAEKVHKFYKGKIQIMPKCTLAGFNWFNAYYTPGVSRISTNIRDNNDSSLFYSLRGNFVGV   95 (487)
T ss_dssp             CCHHHHHHHHHH-H--HHHHHHHHHHHHTSSEEEEECSCCSSGGGHHHHSTTTHHHHHHHHHHCGGGHHHHSGGGGEEEE
T ss_pred             CChhHhhhccch-h--hHHHHHHHhhhCCCeEEEEecCCCCCHHHCeeeeCcchHHHHHHHHhChHHHhhhcccCCEEEE
Confidence            555565555433 1  126677631 0100111  33445 99999999999  88998887777  7889999999999


Q ss_pred             ec----ccChhhHHHHH----HhhccC---------------Chh-hH--hhhhhcccccccccCCCCCCCCcccccccc
Q psy14377        141 HA----SLGIADLCVMA----MQKEGT---------------SEQ-DA--RDKIWMVDSKGLIVKDRPEGGVTGHKVHYA  194 (848)
Q Consensus       141 fp----~Lgl~~m~~~A----~~ala~---------------~v~-d~--~~~ay~~~~~G~lYPkppd~gIr~edIavA  194 (848)
                      ++    .|||+|+++.|    |++++.               .+. +.  ...+.+++..-.++|  .|++|++||++.+
T Consensus        96 VTDG~aILGLGDiG~~agmpImeGKl~Lyk~~aGId~lPI~LD~gt~~~~~d~defve~v~~~~P--~fG~InlEDf~ap  173 (487)
T 3nv9_A           96 VSDSTRVLGDGDVTPPGGLGVMEGKALLMKYLGGIDAVPICIDSKNKEGKNDPDAVIEFVQRIQH--TFGAINLEDISQP  173 (487)
T ss_dssp             EECSSSBGGGBCCCGGGGHHHHHHHHHHHHHHHCCEEEEEECCCBCTTSCBCHHHHHHHHHHHGG--GCSEEEECSCCTT
T ss_pred             EEcCceeeeccccccccCCchhhhHHHHHHhcCCCceeeeEEeCCCccccCCHHHHHHHHHHhCC--CCCeecHhhcCCc
Confidence            99    89999999865    344441               221 00  011224445666778  7778999999999


Q ss_pred             ccchhhhhHHhhhcCCCCeE---EEchhhHHHHHHHHHHHHHhCCcCCCceEEEeccchHHHHHHHHHHHHHHhcCCChh
Q psy14377        195 KKHAPVKNLADVVKTVKPSI---LIGESCVNDVAGLLASLRITKTRLSDNTILFQGAGEASLGIADLCVMAMQKEGTSEQ  271 (848)
Q Consensus       195 k~fe~ek~Lle~lr~~iPvF---qhGTA~V~~lAgll~Al~~tg~~l~d~riv~~GAGaAg~gia~ll~~~m~~~G~s~~  271 (848)
                      +||++++++.+++  .+|||   |||||+|+ ||||+||+|++|++|+||||||+|||+||+|||+||+.    .|+|+ 
T Consensus       174 ~af~il~ryr~~~--~ipvFnDD~qGTA~V~-lAgllnAlki~gk~l~d~riV~~GAGaAGigia~ll~~----~G~~~-  245 (487)
T 3nv9_A          174 NCYKILDVLRESC--DIPVWHDDQQGTASVT-LAGLLNALKLVKKDIHECRMVFIGAGSSNTTCLRLIVT----AGADP-  245 (487)
T ss_dssp             HHHHHHHHHHHHC--SSCEEETTTHHHHHHH-HHHHHHHHHHHTCCGGGCCEEEECCSHHHHHHHHHHHH----TTCCG-
T ss_pred             hHHHHHHHHHhhc--cCCccccccchHHHHH-HHHHHHHHHHhCCChhhcEEEEECCCHHHHHHHHHHHH----cCCCc-
Confidence            9999999888875  79999   99999999 99999999999999999999999999999999999986    49985 


Q ss_pred             hhcCcEEEEcCCCcccCCCCCCCCCccccccccccCCcchhhhhhhccccccHHHHhhhcccccCcccccchhHHHHHhh
Q psy14377        272 DARDKIWMVDSKGLIVKDRPEGGVTGHKVHYAKKHAPVKNLADVVKTGMAFSIEERQALGIHGLLPAAVKSQDEQLHLCK  351 (848)
Q Consensus       272 eA~~~i~~vD~kGLi~~~r~~~~l~~~k~~~a~~~~~~~~l~~~~n~g~~~~~~er~~~~~~G~~p~~v~~~~~q~~~~~  351 (848)
                         ++|||||++|||+++|++  +++++ ++.++..                                            
T Consensus       246 ---~~i~l~D~~Gli~~~R~~--l~~~~-~~~~k~~--------------------------------------------  275 (487)
T 3nv9_A          246 ---KKIVMFDSKGSLHNGRED--IKKDT-RFYRKWE--------------------------------------------  275 (487)
T ss_dssp             ---GGEEEEETTEECCTTCHH--HHHCG-GGHHHHH--------------------------------------------
T ss_pred             ---ccEEEEeccccccCCcch--hhhhc-ccHHHHH--------------------------------------------
Confidence               999999999999999953  54433 1111100                                            


Q ss_pred             ccccccCCChhhHHHHHHhhcccceeEEEeccCceecccccCCCCCCCcccccccHHHHHcCCCcCccCceeeEEccccc
Q psy14377        352 LNVDRYEDPLNKYIYLQALAVKTDIRAIVVTDGERILGLGDLGAYGMGIPVGKLSLYTALAGIKPHQCLPITLDVGTNWR  431 (848)
Q Consensus       352 ~~~~~~~~~~~~~~~L~~l~~~~~~~~~~~~d~~~l~g~~~~g~~~~~~~~g~~~L~~al~g~kP~~~~~~~v~iG~~~~  431 (848)
                                    |..    .        ++++                 ...+|.++++++        |||||+   
T Consensus       276 --------------~A~----~--------~n~~-----------------~~~~L~eav~~a--------dVlIG~---  301 (487)
T 3nv9_A          276 --------------ICE----T--------TNPS-----------------KFGSIAEACVGA--------DVLISL---  301 (487)
T ss_dssp             --------------HHH----H--------SCTT-----------------CCCSHHHHHTTC--------SEEEEC---
T ss_pred             --------------HHH----h--------cccc-----------------cCCCHHHHHhcC--------CEEEEe---
Confidence                          000    0        0000                 123689999986        899998   


Q ss_pred             cccCC-CCCCCHHHHHHHHhcCCCceEEecCCCCCccCCCHHHHhccCCCcEEEEeCCCCCCcccCCeEEecccchhhcc
Q psy14377        432 RAAAI-PQVFTADILKDMAAFNKRPIIFALSNPTSKAECTAEQAYVNTDGRGVFASGSPFDPVTYKGKTFTPGQEYVVEL  510 (848)
Q Consensus       432 ~~S~~-~g~FTeevvk~Ma~~~~rPIIFaLSNPt~~~E~tpe~a~~~T~G~ai~AtGsPf~pv~y~g~~~~~~q~nn~e~  510 (848)
                        |++ ||+|||||||+|+   +|||||||||||  |||+||||++  +|++||||||+          ++|+|+||++ 
T Consensus       302 --S~~~pg~ft~e~V~~Ma---~~PIIFaLSNPt--pEi~pe~A~~--~G~aIvATGrs----------d~PnQ~NN~l-  361 (487)
T 3nv9_A          302 --STPGPGVVKAEWIKSMG---EKPIVFCCANPV--PEIYPYEAKE--AGAYIVATGRG----------DFPNQVNNSV-  361 (487)
T ss_dssp             --CCSSCCCCCHHHHHTSC---SSCEEEECCSSS--CSSCHHHHHH--TTCSEEEESCT----------TSSSBCCGGG-
T ss_pred             --cccCCCCCCHHHHHhhc---CCCEEEECCCCC--ccCCHHHHHH--hCCEEEEECCC----------CCcccCccee-
Confidence              655 8999999999997   799999999999  7999999998  59999999984          4589999995 


Q ss_pred             CCeEecchhhhHHHhhccccccCccceeeccCcccHHHHHhcC
Q psy14377        511 MPIVYTPTVGLACQKYGLIFRRPRGLFISIHDKGHISEVLRNW  553 (848)
Q Consensus       511 lPvvYTPGVG~acl~~~~i~r~p~gm~L~~~d~g~i~eiL~Nw  553 (848)
                          .|||++++++.+++. +++++|+++      ..+.|++.
T Consensus       362 ----iFPGI~~Gal~~~A~-~Itd~M~~A------AA~ALA~~  393 (487)
T 3nv9_A          362 ----GFPGILKGALIVRAR-KITDNMAIA------ASRALAEF  393 (487)
T ss_dssp             ----THHHHHHHHHHTTCS-SCCHHHHHH------HHHHHHHH
T ss_pred             ----EcchhhHHHHHcCCc-ccCHHHHHH------HHHHHHhh
Confidence                479999999999985 799999996      56667664

>2a9f_A Putative malic enzyme ((S)-malate:NAD+ oxidoreductase (decarboxylating)); hypothetical protein, structural genomics, PSI; 2.50A {Streptococcus pyogenes}

Probab=100.00  E-value=2.4e-57  Score=496.81  Aligned_cols=234  Identities=26%  Similarity=0.364  Sum_probs=206.3

Q ss_pred             ccchhhccCCeEecchhhhHHHhhccccccCccceeeccCcccHHHHHhcCCCCCccEEEEecCceeeccCCCCCC-CCC
Q psy14377        503 GQEYVVELMPIVYTPTVGLACQKYGLIFRRPRGLFISIHDKGHISEVLRNWPETDIRAIVVTDGERILGLGDLGAY-GMG  581 (848)
Q Consensus       503 ~q~nn~e~lPvvYTPGVG~acl~~~~i~r~p~gm~L~~~d~g~i~eiL~Nwp~~d~~viVVTDG~rILGLGDlG~~-gmg  581 (848)
                      ....|.++||++|||||+++|+.++   +          |+++++    +|+.+.++++|||||+|||||||+|++ ||+
T Consensus        28 ~~~~~~~~l~i~YtP~V~~~c~~i~---~----------~p~~v~----~~t~~~~~V~VvTdG~~iLGLGD~G~~aG~p   90 (398)
T 2a9f_A           28 VDIKTKHDLSIAYTPGVASVSSAIA---K----------DKTLAY----DLTTKKNTVAVISDGTAVLGLGDIGPEAAMP   90 (398)
T ss_dssp             SCCSSHHHHHHHSTTTTHHHHHHHH---H----------CGGGHH----HHSGGGTEEEEEECSSSCTTSCCCCHHHHHH
T ss_pred             cccCCHHHCeEEECchHHHHHHHHH---h----------CHHHHH----HhcccCCEEEEEECCccccCCCCcccccCCc
Confidence            3467889999999999999999954   3          445555    466666799999999999999999998 899


Q ss_pred             ccccceeeeeecCCCCCCceeeEEeeccCCcccccCCcccccccccCCCCcchhHHHHHHHHHHHHhhCCc-eeeeeecC
Q psy14377        582 IPVGKLSLYTALAGIKPHQCLPITLDVGTNTQQLLDDPLYIGLRQRRTTGQAYDDFIEEFMQAVVARYGQH-VLIQFEDF  660 (848)
Q Consensus       582 IpvGKl~Ly~a~aGI~p~~~LPv~LDvGTnn~~ll~Dp~y~g~r~~R~~g~~y~~fvdefv~av~~~fGp~-~~IqfEDf  660 (848)
                      |++||+.||++|||||   |+|||||+||                           +||||+++++.| |. ..||||||
T Consensus        91 I~eGK~~Lf~~~agid---~~pi~Ldv~~---------------------------~dEfv~~v~~~~-p~F~~I~lED~  139 (398)
T 2a9f_A           91 VMEGKAALFKAFAGVD---AIPIVLDTKD---------------------------TEEIISIVKALA-PTFGGINLEDI  139 (398)
T ss_dssp             HHHHHHHHHHHHSSCE---EEEEECCCCC---------------------------HHHHHHHHHHHG-GGCSEEEECSC
T ss_pred             chhCHHHHHHhccCCc---eeeeEeCCCC---------------------------HHHHHHHHHHcC-CceeEeccccC
Confidence            9999999999999999   9999999984                           578888888777 66 67999999


Q ss_pred             CCcchHHHHHHHccc--CceeccCCchHHHHHHHHHHHHHhhhCCcCCCceEEecCcchhhHHHHHHHHHHHhccccccc
Q psy14377        661 ANHSAFRFLDTYRNR--YCVFNDDIQGTASVAVAGLLASLRITKTRLSDNTILFQGAGEGTASVAVAGLLASLRITKTRL  738 (848)
Q Consensus       661 ~~~naf~lL~ryr~~--~~~FnDDiQGTaaV~LAgllaAlr~t~~~l~d~riv~~GAG~A~~g~giA~ll~~~~~~~~~~  738 (848)
                      ++||||++|+|||++  +|||||||||||+|++||++||+|++|++++|+||||+|||+|  |+|||++++.++++++.+
T Consensus       140 ~~p~~f~il~~~r~~~~ipvf~DDiqGTa~V~lAall~al~l~g~~l~d~kVVi~GAGaA--G~~iA~ll~~~Ga~~I~v  217 (398)
T 2a9f_A          140 SAPRCFEIEQRLIKECHIPVFHDDQHGTAIVVLAAIFNSLKLLKKSLDEVSIVVNGGGSA--GLSITRKLLAAGATKVTV  217 (398)
T ss_dssp             CTTHHHHHHHHHHHHCSSCEEEHHHHHHHHHHHHHHHHHHHTTTCCTTSCEEEEECCSHH--HHHHHHHHHHHTCCEEEE
T ss_pred             CChHHHHHHHHhhhcCCcceecchhhhHHHHHHHHHHHHHHHhCCCCCccEEEEECCCHH--HHHHHHHHHHcCCCeEEE
Confidence            999999999999997  9999999999999999999999999999999999999999999  999999999999989999


Q ss_pred             cc-CceecCCCCCCchH-HHhhhcccc----chhhccccCCCceEEeecCCCcc
Q psy14377        739 SD-NTILFQGAGEGTAS-VAIAGLLAS----LRITKTRLSDNTILFQGSGEGTA  786 (848)
Q Consensus       739 ~d-~g~i~~~r~~~~~~-~~~~~~~~~----~r~~~~~~~~~~~~~~~s~~~~~  786 (848)
                      +| +|+|+++|+++++. +...+-.+.    .++|+++++++|+|+|+|+.|.-
T Consensus       218 ~D~~Gli~~~R~~~L~~~k~~fa~~~~~~~~~~~L~eav~~ADV~IG~Sapgl~  271 (398)
T 2a9f_A          218 VDKFGIINEQEAAQLAPHHLDIAKVTNREFKSGTLEDALEGADIFIGVSAPGVL  271 (398)
T ss_dssp             EETTEECCTTCCCSCCC---CHHHHHSCTTCCCSCSHHHHTTCSEEECCSTTCC
T ss_pred             EECCCcccCCccccchHHHHHHhhccCcccchhhHHHHhccCCEEEecCCCCCC
Confidence            99 99999999545554 333344343    67899999999999999986653

>1vl6_A Malate oxidoreductase; TM0542, NAD-dependent malic enzyme, structural genomics, JCS protein structure initiative, PSI; 2.61A {Thermotoga maritima} SCOP: c.2.1.7 c.58.1.3 PDB: 2hae_A*

Probab=100.00  E-value=1.1e-54  Score=475.13  Aligned_cols=233  Identities=24%  Similarity=0.353  Sum_probs=205.7

Q ss_pred             ccchhhccCCeEecchhhhHHHhhccccccCccceeeccCcccHHHHHhcCCCCCccEEEEecCceeeccCCCCCC-CCC
Q psy14377        503 GQEYVVELMPIVYTPTVGLACQKYGLIFRRPRGLFISIHDKGHISEVLRNWPETDIRAIVVTDGERILGLGDLGAY-GMG  581 (848)
Q Consensus       503 ~q~nn~e~lPvvYTPGVG~acl~~~~i~r~p~gm~L~~~d~g~i~eiL~Nwp~~d~~viVVTDG~rILGLGDlG~~-gmg  581 (848)
                      ....|.++||++|||||+++|+.++   +          |+++++    +|+.+.++++|||||+|||||||+|++ ||+
T Consensus        32 ~~~~~~~~l~i~YtP~V~~~c~~~~---~----------~p~~v~----~~t~~~~~V~VvTdg~~vLGlGD~G~~ag~p   94 (388)
T 1vl6_A           32 VEKVDRETLSLLYTPGVADVARACA---E----------DPEKTY----VYTSRWNTVAVVSDGSAVLGLGNIGPYGALP   94 (388)
T ss_dssp             CSCCCHHHHHHHSTTTHHHHHHHHH---H----------CGGGHH----HHSGGGGEEEEEECSTTBTTTBSCCHHHHHH
T ss_pred             eecCCHHHCeEEECchHHHHHHHHH---h----------CHHHHH----hhcccCCeEEEEECCccccCCCccccccCCc
Confidence            3467889999999999999999954   3          444555    466667799999999999999999998 899


Q ss_pred             ccccceeeeeecCCCCCCceeeEEeeccCCcccccCCcccccccccCCCCcchhHHHHHHHHHHHHhhCCc-eeeeeecC
Q psy14377        582 IPVGKLSLYTALAGIKPHQCLPITLDVGTNTQQLLDDPLYIGLRQRRTTGQAYDDFIEEFMQAVVARYGQH-VLIQFEDF  660 (848)
Q Consensus       582 IpvGKl~Ly~a~aGI~p~~~LPv~LDvGTnn~~ll~Dp~y~g~r~~R~~g~~y~~fvdefv~av~~~fGp~-~~IqfEDf  660 (848)
                      |++||+.||++|||||   |+|||||+||                           +||||+++++.| |. ..||||||
T Consensus        95 I~egK~~Lf~~~agid---~~pi~ldv~~---------------------------~dE~v~~vk~~~-p~f~~i~lED~  143 (388)
T 1vl6_A           95 VMEGKAFLFKAFADID---AFPICLSESE---------------------------EEKIISIVKSLE-PSFGGINLEDI  143 (388)
T ss_dssp             HHHHHHHHHHHHHCCE---EEEEECSCCC---------------------------HHHHHHHHHHTG-GGCSEEEECSC
T ss_pred             chhCHHHHHHhccCCc---eEeEEeCCCC---------------------------HHHHHHHHHHcC-CcceEeCHhhc
Confidence            9999999999999999   9999999984                           578888887777 66 67999999


Q ss_pred             CCcchHHHHHHHccc--CceeccCCchHHHHHHHHHHHHHhhhCCcCCCceEEecCcchhhHHHHHHHHHHHhccccccc
Q psy14377        661 ANHSAFRFLDTYRNR--YCVFNDDIQGTASVAVAGLLASLRITKTRLSDNTILFQGAGEGTASVAVAGLLASLRITKTRL  738 (848)
Q Consensus       661 ~~~naf~lL~ryr~~--~~~FnDDiQGTaaV~LAgllaAlr~t~~~l~d~riv~~GAG~A~~g~giA~ll~~~~~~~~~~  738 (848)
                      ++||||++|+|||++  |||||||||||++|++||++||+|++|++++|+||||+|||+|  |+++|++|+.++++++.+
T Consensus       144 ~~p~af~il~r~r~~~~Ipvf~DDiqGTasV~lAal~~A~~i~g~~l~~~kVVv~GAGaA--G~~iAkll~~~G~~~I~v  221 (388)
T 1vl6_A          144 GAPKCFRILQRLSEEMNIPVFHDDQQGTAVVVSAAFLNALKLTEKKIEEVKVVVNGIGAA--GYNIVKFLLDLGVKNVVA  221 (388)
T ss_dssp             CTTHHHHHHHHHHHHCSSCEEEHHHHHHHHHHHHHHHHHHHHHTCCTTTCEEEEECCSHH--HHHHHHHHHHHTCCEEEE
T ss_pred             CCHHHHHHHHHhhhhcCcceeccccccHHHHHHHHHHHHHHHhCCCCCCcEEEEECCCHH--HHHHHHHHHhCCCCeEEE
Confidence            999999999999996  9999999999999999999999999999999999999999999  999999999999989999


Q ss_pred             cc-CceecCCCCCC-chH-HHhhhcccc----chhhccccCCCceEEeecCCCc
Q psy14377        739 SD-NTILFQGAGEG-TAS-VAIAGLLAS----LRITKTRLSDNTILFQGSGEGT  785 (848)
Q Consensus       739 ~d-~g~i~~~r~~~-~~~-~~~~~~~~~----~r~~~~~~~~~~~~~~~s~~~~  785 (848)
                      +| +|+|+++|..+ ++. +...+..+.    .++|+++++++|+|+|+|+.|.
T Consensus       222 ~Dr~Gli~~~R~~~~L~~~k~~~A~~~~~~~~~~~L~eav~~ADVlIG~Sap~l  275 (388)
T 1vl6_A          222 VDRKGILNENDPETCLNEYHLEIARITNPERLSGDLETALEGADFFIGVSRGNI  275 (388)
T ss_dssp             EETTEECCTTSGGGCSSHHHHHHHHTSCTTCCCSCHHHHHTTCSEEEECSCSSC
T ss_pred             EECCCcccCCCcccccCHHHHHHHHhhhccCchhhHHHHHccCCEEEEeCCCCc
Confidence            99 99999999753 554 333344343    6789999999999999997443

>2a9f_A Putative malic enzyme ((S)-malate:NAD+ oxidoreductase (decarboxylating)); hypothetical protein, structural genomics, PSI; 2.50A {Streptococcus pyogenes}

Probab=100.00  E-value=3.2e-53  Score=464.38  Aligned_cols=294  Identities=20%  Similarity=0.283  Sum_probs=246.1

Q ss_pred             CccccccccCC--ccccccccCCc--CccCCcCccceeeec----ccChhhHHHHHH----hhccC--------------
Q psy14377        106 SQRDFLSSWLN--RGPCLNCWGKR--DFEQDKQGISYSIHA----SLGIADLCVMAM----QKEGT--------------  159 (848)
Q Consensus       106 ~~~piifA~sn--~~~~i~atG~~--~fdypnQ~Nnv~vfp----~Lgl~~m~~~A~----~ala~--------------  159 (848)
                      +++++.++|+|  +.+|....-+|  .|+||+++|.|+|.+    +||++|++..|+    ++++.              
T Consensus        32 ~~~~l~i~YtP~V~~~c~~i~~~p~~v~~~t~~~~~V~VvTdG~~iLGLGD~G~~aG~pI~eGK~~Lf~~~agid~~pi~  111 (398)
T 2a9f_A           32 TKHDLSIAYTPGVASVSSAIAKDKTLAYDLTTKKNTVAVISDGTAVLGLGDIGPEAAMPVMEGKAALFKAFAGVDAIPIV  111 (398)
T ss_dssp             SHHHHHHHSTTTTHHHHHHHHHCGGGHHHHSGGGTEEEEEECSSSCTTSCCCCHHHHHHHHHHHHHHHHHHSSCEEEEEE
T ss_pred             CHHHCeEEECchHHHHHHHHHhCHHHHHHhcccCCEEEEEECCccccCCCCcccccCCcchhCHHHHHHhccCCceeeeE
Confidence            88899999999  88886666666  677999999999999    799999998753    33331              


Q ss_pred             -ChhhHhhhhhcccccccccCCCCCCCCccccccccccchhhhhHHhhhcCCCCeE---EEchhhHHHHHHHHHHHHHhC
Q psy14377        160 -SEQDARDKIWMVDSKGLIVKDRPEGGVTGHKVHYAKKHAPVKNLADVVKTVKPSI---LIGESCVNDVAGLLASLRITK  235 (848)
Q Consensus       160 -~v~d~~~~ay~~~~~G~lYPkppd~gIr~edIavAk~fe~ek~Lle~lr~~iPvF---qhGTA~V~~lAgll~Al~~tg  235 (848)
                       .+.+.+   .+++..-.++|  .|++|++|+++.++||++++++.+.+  .+|+|   ||||++|+ +||++||+|++|
T Consensus       112 Ldv~~~d---Efv~~v~~~~p--~F~~I~lED~~~p~~f~il~~~r~~~--~ipvf~DDiqGTa~V~-lAall~al~l~g  183 (398)
T 2a9f_A          112 LDTKDTE---EIISIVKALAP--TFGGINLEDISAPRCFEIEQRLIKEC--HIPVFHDDQHGTAIVV-LAAIFNSLKLLK  183 (398)
T ss_dssp             CCCCCHH---HHHHHHHHHGG--GCSEEEECSCCTTHHHHHHHHHHHHC--SSCEEEHHHHHHHHHH-HHHHHHHHHTTT
T ss_pred             eCCCCHH---HHHHHHHHcCC--ceeEeccccCCChHHHHHHHHhhhcC--CcceecchhhhHHHHH-HHHHHHHHHHhC
Confidence             222222   23445666778  77799999999999999999998863  79999   99999999 999999999999


Q ss_pred             CcCCCceEEEeccchHHHHHHHHHHHHHHhcCCChhhhcCcEEEEcCCCcccCCCCCCCCCccccccccccCCcchhhhh
Q psy14377        236 TRLSDNTILFQGAGEASLGIADLCVMAMQKEGTSEQDARDKIWMVDSKGLIVKDRPEGGVTGHKVHYAKKHAPVKNLADV  315 (848)
Q Consensus       236 ~~l~d~riv~~GAGaAg~gia~ll~~~m~~~G~s~~eA~~~i~~vD~kGLi~~~r~~~~l~~~k~~~a~~~~~~~~l~~~  315 (848)
                      ++++|+||||+|||+||++||++++.+    |      .++||++|++||++++|.+ +|+++|.+|++.++....    
T Consensus       184 ~~l~d~kVVi~GAGaAG~~iA~ll~~~----G------a~~I~v~D~~Gli~~~R~~-~L~~~k~~fa~~~~~~~~----  248 (398)
T 2a9f_A          184 KSLDEVSIVVNGGGSAGLSITRKLLAA----G------ATKVTVVDKFGIINEQEAA-QLAPHHLDIAKVTNREFK----  248 (398)
T ss_dssp             CCTTSCEEEEECCSHHHHHHHHHHHHH----T------CCEEEEEETTEECCTTCCC-SCCC---CHHHHHSCTTC----
T ss_pred             CCCCccEEEEECCCHHHHHHHHHHHHc----C------CCeEEEEECCCcccCCccc-cchHHHHHHhhccCcccc----
Confidence            999999999999999999999999986    8      4899999999999999932 388998888876432000    


Q ss_pred             hhccccccHHHHhhhcccccCcccccchhHHHHHhhccccccCCChhhHHHHHHhhcccceeEEEeccCceecccccCCC
Q psy14377        316 VKTGMAFSIEERQALGIHGLLPAAVKSQDEQLHLCKLNVDRYEDPLNKYIYLQALAVKTDIRAIVVTDGERILGLGDLGA  395 (848)
Q Consensus       316 ~n~g~~~~~~er~~~~~~G~~p~~v~~~~~q~~~~~~~~~~~~~~~~~~~~L~~l~~~~~~~~~~~~d~~~l~g~~~~g~  395 (848)
                                                                                                      
T Consensus       249 --------------------------------------------------------------------------------  248 (398)
T 2a9f_A          249 --------------------------------------------------------------------------------  248 (398)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             CCCCcccccccHHHHHcCCCcCccCceeeEEccccccccCCCCCCCHHHHHHHHhcCCCceEEecCCCCCccCCCHHHHh
Q psy14377        396 YGMGIPVGKLSLYTALAGIKPHQCLPITLDVGTNWRRAAAIPQVFTADILKDMAAFNKRPIIFALSNPTSKAECTAEQAY  475 (848)
Q Consensus       396 ~~~~~~~g~~~L~~al~g~kP~~~~~~~v~iG~~~~~~S~~~g~FTeevvk~Ma~~~~rPIIFaLSNPt~~~E~tpe~a~  475 (848)
                              +.+|.++++++        |||||+     |+ ||+||+|+||+|+   ++||||||||||  |||+||||+
T Consensus       249 --------~~~L~eav~~A--------DV~IG~-----Sa-pgl~T~EmVk~Ma---~~pIIfalsNPt--~E~~pe~a~  301 (398)
T 2a9f_A          249 --------SGTLEDALEGA--------DIFIGV-----SA-PGVLKAEWISKMA---ARPVIFAMANPI--PEIYPDEAL  301 (398)
T ss_dssp             --------CCSCSHHHHTT--------CSEEEC-----CS-TTCCCHHHHHTSC---SSCEEEECCSSS--CSSCHHHHH
T ss_pred             --------hhhHHHHhccC--------CEEEec-----CC-CCCCCHHHHHhhC---CCCEEEECCCCC--ccCCHHHHH
Confidence                    11456778876        999997     56 9999999999999   799999999999  899999999


Q ss_pred             ccCCCcEEEEeCCCCCCcccCCeEEecccchhhccCCeEecchhhhHHHhhccccccCccceeeccCcccHHHHHhcC
Q psy14377        476 VNTDGRGVFASGSPFDPVTYKGKTFTPGQEYVVELMPIVYTPTVGLACQKYGLIFRRPRGLFISIHDKGHISEVLRNW  553 (848)
Q Consensus       476 ~~T~G~ai~AtGsPf~pv~y~g~~~~~~q~nn~e~lPvvYTPGVG~acl~~~~i~r~p~gm~L~~~d~g~i~eiL~Nw  553 (848)
                      +|  |++||||||+          ++|+|+||++     .|||++++++.+++. +++++|+++      ..+.|++.
T Consensus       302 ~~--g~~i~atGrs----------~~p~Q~NN~~-----~FPgi~~Gal~~~a~-~I~d~m~~a------Aa~alA~~  355 (398)
T 2a9f_A          302 EA--GAYIVGTGRS----------DFPNQINNVL-----AFPGIFRGALDARAK-TITVEMQIA------AAKGIASL  355 (398)
T ss_dssp             TT--TCSEEEESCT----------TSSSBCCGGG-----THHHHHHHHHHHTCS-SCCHHHHHH------HHHHHHHT
T ss_pred             Hh--CCeEEEeCCC----------CCCCcCCcee-----EcchHHHHHHHcCCc-CCCHHHHHH------HHHHHHhc
Confidence            99  9999999984          5699999995     479999999999985 799999997      77888876

>1vl6_A Malate oxidoreductase; TM0542, NAD-dependent malic enzyme, structural genomics, JCS protein structure initiative, PSI; 2.61A {Thermotoga maritima} SCOP: c.2.1.7 c.58.1.3 PDB: 2hae_A*

Probab=100.00  E-value=4.8e-50  Score=438.61  Aligned_cols=294  Identities=19%  Similarity=0.288  Sum_probs=246.8

Q ss_pred             CccccccccCC--ccccccccCCc--CccCCcCccceeeec----ccChhhHHHHHH----hhccC--------------
Q psy14377        106 SQRDFLSSWLN--RGPCLNCWGKR--DFEQDKQGISYSIHA----SLGIADLCVMAM----QKEGT--------------  159 (848)
Q Consensus       106 ~~~piifA~sn--~~~~i~atG~~--~fdypnQ~Nnv~vfp----~Lgl~~m~~~A~----~ala~--------------  159 (848)
                      +++++.++|+|  +.+|....-+|  .|+||+++|.|+|.+    +||++|++..|+    ++++.              
T Consensus        36 ~~~~l~i~YtP~V~~~c~~~~~~p~~v~~~t~~~~~V~VvTdg~~vLGlGD~G~~ag~pI~egK~~Lf~~~agid~~pi~  115 (388)
T 1vl6_A           36 DRETLSLLYTPGVADVARACAEDPEKTYVYTSRWNTVAVVSDGSAVLGLGNIGPYGALPVMEGKAFLFKAFADIDAFPIC  115 (388)
T ss_dssp             CHHHHHHHSTTTHHHHHHHHHHCGGGHHHHSGGGGEEEEEECSTTBTTTBSCCHHHHHHHHHHHHHHHHHHHCCEEEEEE
T ss_pred             CHHHCeEEECchHHHHHHHHHhCHHHHHhhcccCCeEEEEECCccccCCCccccccCCcchhCHHHHHHhccCCceEeEE
Confidence            88899999999  88887666566  677999999999999    899999998753    33332              


Q ss_pred             -ChhhHhhhhhcccccccccCCCCCCCCccccccccccchhhhhHHhhhcCCCCeE---EEchhhHHHHHHHHHHHHHhC
Q psy14377        160 -SEQDARDKIWMVDSKGLIVKDRPEGGVTGHKVHYAKKHAPVKNLADVVKTVKPSI---LIGESCVNDVAGLLASLRITK  235 (848)
Q Consensus       160 -~v~d~~~~ay~~~~~G~lYPkppd~gIr~edIavAk~fe~ek~Lle~lr~~iPvF---qhGTA~V~~lAgll~Al~~tg  235 (848)
                       .+.+.+   .+++..-.++|  .|++|++|+++.++||++++++.+..  .+|+|   ||||++|+ +||++||++++|
T Consensus       116 ldv~~~d---E~v~~vk~~~p--~f~~i~lED~~~p~af~il~r~r~~~--~Ipvf~DDiqGTasV~-lAal~~A~~i~g  187 (388)
T 1vl6_A          116 LSESEEE---KIISIVKSLEP--SFGGINLEDIGAPKCFRILQRLSEEM--NIPVFHDDQQGTAVVV-SAAFLNALKLTE  187 (388)
T ss_dssp             CSCCCHH---HHHHHHHHTGG--GCSEEEECSCCTTHHHHHHHHHHHHC--SSCEEEHHHHHHHHHH-HHHHHHHHHHHT
T ss_pred             eCCCCHH---HHHHHHHHcCC--cceEeCHhhcCCHHHHHHHHHhhhhc--CcceeccccccHHHHH-HHHHHHHHHHhC
Confidence             111211   13344667778  67789999999999999999998864  79999   99999999 999999999999


Q ss_pred             CcCCCceEEEeccchHHHHHHHHHHHHHHhcCCChhhhcCcEEEEcCCCcccCCCCCCCCCccccccccccCCcchhhhh
Q psy14377        236 TRLSDNTILFQGAGEASLGIADLCVMAMQKEGTSEQDARDKIWMVDSKGLIVKDRPEGGVTGHKVHYAKKHAPVKNLADV  315 (848)
Q Consensus       236 ~~l~d~riv~~GAGaAg~gia~ll~~~m~~~G~s~~eA~~~i~~vD~kGLi~~~r~~~~l~~~k~~~a~~~~~~~~l~~~  315 (848)
                      ++++|+||||+|||+||++||++++..    |      .++||++|++||++++|.+..|+++|.+|+++.++..     
T Consensus       188 ~~l~~~kVVv~GAGaAG~~iAkll~~~----G------~~~I~v~Dr~Gli~~~R~~~~L~~~k~~~A~~~~~~~-----  252 (388)
T 1vl6_A          188 KKIEEVKVVVNGIGAAGYNIVKFLLDL----G------VKNVVAVDRKGILNENDPETCLNEYHLEIARITNPER-----  252 (388)
T ss_dssp             CCTTTCEEEEECCSHHHHHHHHHHHHH----T------CCEEEEEETTEECCTTSGGGCSSHHHHHHHHTSCTTC-----
T ss_pred             CCCCCcEEEEECCCHHHHHHHHHHHhC----C------CCeEEEEECCCcccCCCcccccCHHHHHHHHhhhccC-----
Confidence            999999999999999999999999876    8      6899999999999999964227777777776532100     


Q ss_pred             hhccccccHHHHhhhcccccCcccccchhHHHHHhhccccccCCChhhHHHHHHhhcccceeEEEeccCceecccccCCC
Q psy14377        316 VKTGMAFSIEERQALGIHGLLPAAVKSQDEQLHLCKLNVDRYEDPLNKYIYLQALAVKTDIRAIVVTDGERILGLGDLGA  395 (848)
Q Consensus       316 ~n~g~~~~~~er~~~~~~G~~p~~v~~~~~q~~~~~~~~~~~~~~~~~~~~L~~l~~~~~~~~~~~~d~~~l~g~~~~g~  395 (848)
                                                                                                      
T Consensus       253 --------------------------------------------------------------------------------  252 (388)
T 1vl6_A          253 --------------------------------------------------------------------------------  252 (388)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             CCCCcccccccHHHHHcCCCcCccCceeeEEccccccccCCCCCCCHHHHHHHHhcCCCceEEecCCCCCccCCCHHHHh
Q psy14377        396 YGMGIPVGKLSLYTALAGIKPHQCLPITLDVGTNWRRAAAIPQVFTADILKDMAAFNKRPIIFALSNPTSKAECTAEQAY  475 (848)
Q Consensus       396 ~~~~~~~g~~~L~~al~g~kP~~~~~~~v~iG~~~~~~S~~~g~FTeevvk~Ma~~~~rPIIFaLSNPt~~~E~tpe~a~  475 (848)
                             -..+|.++++++        ||+||+     |+ ||+||+|+||+|+   ++||||+|||||  |||+||||+
T Consensus       253 -------~~~~L~eav~~A--------DVlIG~-----Sa-p~l~t~emVk~Ma---~~pIIfalSNPt--~E~~p~~a~  306 (388)
T 1vl6_A          253 -------LSGDLETALEGA--------DFFIGV-----SR-GNILKPEWIKKMS---RKPVIFALANPV--PEIDPELAR  306 (388)
T ss_dssp             -------CCSCHHHHHTTC--------SEEEEC-----SC-SSCSCHHHHTTSC---SSCEEEECCSSS--CSSCHHHHH
T ss_pred             -------chhhHHHHHccC--------CEEEEe-----CC-CCccCHHHHHhcC---CCCEEEEcCCCC--CCCCHHHHH
Confidence                   012577888886        999997     66 9999999999998   799999999999  999999999


Q ss_pred             ccCCCcEEEEeCCCCCCcccCCeEEecccchhhccCCeEecchhhhHHHhhccccccCccceeeccCcccHHHHHhcC
Q psy14377        476 VNTDGRGVFASGSPFDPVTYKGKTFTPGQEYVVELMPIVYTPTVGLACQKYGLIFRRPRGLFISIHDKGHISEVLRNW  553 (848)
Q Consensus       476 ~~T~G~ai~AtGsPf~pv~y~g~~~~~~q~nn~e~lPvvYTPGVG~acl~~~~i~r~p~gm~L~~~d~g~i~eiL~Nw  553 (848)
                      +|  |++||||||          +++|||+||++     .|||++++++.+++.  ++++|+++      ..+.|++.
T Consensus       307 ~~--g~~i~atGr----------~~~p~Q~NN~~-----~FPgi~~Gal~~~a~--i~~~m~~a------Aa~alA~~  359 (388)
T 1vl6_A          307 EA--GAFIVATGR----------SDHPNQVNNLL-----AFPGIMKGAVEKRSK--ITKNMLLS------AVEAIARS  359 (388)
T ss_dssp             HT--TCSEEEESC----------TTSSSBCCGGG-----THHHHHHHHHHHCSC--CCHHHHHH------HHHHHHHT
T ss_pred             Hh--cCeEEEeCC----------CCCCCcCCcee-----EcchHhHHHHhcCCc--cCHHHHHH------HHHHHHhh
Confidence            99  999999998          45699999995     479999999999985  99999997      67777764

>2dvm_A Malic enzyme, 439AA long hypothetical malate oxidoreductase; NAD, structural genomics, NPPSFA; HET: NAD MES; 1.60A {Pyrococcus horikoshii} PDB: 1ww8_A*

Probab=100.00  E-value=4.3e-39  Score=357.78  Aligned_cols=234  Identities=28%  Similarity=0.474  Sum_probs=193.7

Q ss_pred             ccchhhccCCeEecchhhhHHHhhccccccCccceeeccCcccHHHHHhcCCCCCccEEEEecCceeeccCCCCCC-CCC
Q psy14377        503 GQEYVVELMPIVYTPTVGLACQKYGLIFRRPRGLFISIHDKGHISEVLRNWPETDIRAIVVTDGERILGLGDLGAY-GMG  581 (848)
Q Consensus       503 ~q~nn~e~lPvvYTPGVG~acl~~~~i~r~p~gm~L~~~d~g~i~eiL~Nwp~~d~~viVVTDG~rILGLGDlG~~-gmg  581 (848)
                      ....|.++||++|||||+++|+.++             +|++++++    |+.++++++|||||+|||||||+|.+ +++
T Consensus        26 ~~~~~~~~l~~~YtP~v~~~c~~~~-------------~~~~~~~~----~~~~~~~v~vvtdgt~ilGlG~iG~hS~sP   88 (439)
T 2dvm_A           26 VSLESREELTLAYTPGVAEPCKEIA-------------RDPGKVYE----YTSKGNLVAVVSDGSRILGLGNIGPLAGLP   88 (439)
T ss_dssp             SCCCSHHHHHHHSTTTTHHHHHHHH-------------HCGGGHHH----HSSGGGEEEEEECSTTBTTTBCCCHHHHHH
T ss_pred             eccCCHHHCeeEECchhHHHHHHHH-------------HCHHHHHh----hcccCcEEEEEECCCeEecccceeccccCH
Confidence            3467889999999999999999954             26677775    66666799999999999999999997 799


Q ss_pred             ccccceeeeeecCCCCCCceeeEEeeccCCcccccCCcccccccccCCCCcchhHHHHHHHHHHHHhhCCceeeeeecCC
Q psy14377        582 IPVGKLSLYTALAGIKPHQCLPITLDVGTNTQQLLDDPLYIGLRQRRTTGQAYDDFIEEFMQAVVARYGQHVLIQFEDFA  661 (848)
Q Consensus       582 IpvGKl~Ly~a~aGI~p~~~LPv~LDvGTnn~~ll~Dp~y~g~r~~R~~g~~y~~fvdefv~av~~~fGp~~~IqfEDf~  661 (848)
                      ++.||+.||++|||||   ++|++||+        +||               ++| .++++.+.+.|+.   +|||||+
T Consensus        89 vmh~ka~lf~~~gGid---~~yi~ldv--------~d~---------------de~-~~~v~~l~~~f~G---invED~T  138 (439)
T 2dvm_A           89 VMEGKALLFKRFGGVD---AFPIMIKE--------QEP---------------NKF-IDIVKAIAPTFGG---INLEDIA  138 (439)
T ss_dssp             HHHHHHHHHHHHHCCE---EEEEECSC--------CSH---------------HHH-HHHHHHTGGGCSE---EEECSCC
T ss_pred             HHHHHHHHHHHhCCCC---Ceeeeeec--------CCH---------------HHH-HHHHHHhCccCcE---EEEEeCC
Confidence            9999999999999999   99999999        243               343 2344444456655   9999999


Q ss_pred             CcchHHHHHHHccc--CceeccCCchHHHHHHHHHHHHHhhhCCcCCCceEEecCcchhhHHHHHHHHHHHhcc--cccc
Q psy14377        662 NHSAFRFLDTYRNR--YCVFNDDIQGTASVAVAGLLASLRITKTRLSDNTILFQGAGEGTASVAVAGLLASLRI--TKTR  737 (848)
Q Consensus       662 ~~naf~lL~ryr~~--~~~FnDDiQGTaaV~LAgllaAlr~t~~~l~d~riv~~GAG~A~~g~giA~ll~~~~~--~~~~  737 (848)
                      .|+||++|++|++.  +|+||||+||||++.++|+++|++.+|++++++|+||+|||.|  |.+|+.+|...++  +++.
T Consensus       139 ~P~k~~il~~l~~avNt~vf~dD~~gtgntd~aG~~~AL~~~g~~l~~~rvlvlGAGgA--g~aia~~L~~~G~~~~~I~  216 (439)
T 2dvm_A          139 SPKCFYILERLREELDIPVFHDDQQGTAAVVLAGLLNALKVVGKKISEITLALFGAGAA--GFATLRILTEAGVKPENVR  216 (439)
T ss_dssp             TTHHHHHHHHHHHHCSSCEEEHHHHHHHHHHHHHHHHHHHHHTCCTTTCCEEEECCSHH--HHHHHHHHHHTTCCGGGEE
T ss_pred             CchHHHHHHHHHHhcCEEEEeCCCcEEeehHHHHHHHHHHHhCCCccCCEEEEECccHH--HHHHHHHHHHcCCCcCeEE
Confidence            99999999999984  8999999999999999999999999999999999999999999  9999999999998  7887


Q ss_pred             ccc-----CceecCCCCCC--chH-HHhhhccc----cchhhccccCCCceEEeecCC--Ccc
Q psy14377        738 LSD-----NTILFQGAGEG--TAS-VAIAGLLA----SLRITKTRLSDNTILFQGSGE--GTA  786 (848)
Q Consensus       738 ~~d-----~g~i~~~r~~~--~~~-~~~~~~~~----~~r~~~~~~~~~~~~~~~s~~--~~~  786 (848)
                      ++|     +|+++++ .+.  ++. +...+..+    +...++++++++|++++.|.-  |..
T Consensus       217 vvd~~~~R~G~~~~a-~~~~~L~~~~~~~a~~~~~~~~~~~L~e~l~~aDVlInaT~~~~G~~  278 (439)
T 2dvm_A          217 VVELVNGKPRILTSD-LDLEKLFPYRGWLLKKTNGENIEGGPQEALKDADVLISFTRPGPGVI  278 (439)
T ss_dssp             EEEEETTEEEECCTT-SCHHHHSTTCHHHHTTSCTTCCCSSHHHHHTTCSEEEECSCCCSSSS
T ss_pred             EEEccCCCcCccccc-cchhHHHHHHHHHhhccccccccccHHHHhccCCEEEEcCCCccCCC
Confidence            776     6777776 221  222 11222222    245678899999999999998  654

>2dvm_A Malic enzyme, 439AA long hypothetical malate oxidoreductase; NAD, structural genomics, NPPSFA; HET: NAD MES; 1.60A {Pyrococcus horikoshii} PDB: 1ww8_A*

Probab=99.98  E-value=1e-33  Score=314.82  Aligned_cols=296  Identities=19%  Similarity=0.248  Sum_probs=229.3

Q ss_pred             CccccccccCC--ccccccccCCc--CccCCcCccceeeec----ccChhhHHHHH----Hhhcc---------------
Q psy14377        106 SQRDFLSSWLN--RGPCLNCWGKR--DFEQDKQGISYSIHA----SLGIADLCVMA----MQKEG---------------  158 (848)
Q Consensus       106 ~~~piifA~sn--~~~~i~atG~~--~fdypnQ~Nnv~vfp----~Lgl~~m~~~A----~~ala---------------  158 (848)
                      +++++.++|+|  +.+|..+.-+|  .|+||++.|-|+|++    .||+++++..+    ++.++               
T Consensus        30 ~~~~l~~~YtP~v~~~c~~~~~~~~~~~~~~~~~~~v~vvtdgt~ilGlG~iG~hS~sPvmh~ka~lf~~~gGid~~yi~  109 (439)
T 2dvm_A           30 SREELTLAYTPGVAEPCKEIARDPGKVYEYTSKGNLVAVVSDGSRILGLGNIGPLAGLPVMEGKALLFKRFGGVDAFPIM  109 (439)
T ss_dssp             SHHHHHHHSTTTTHHHHHHHHHCGGGHHHHSSGGGEEEEEECSTTBTTTBCCCHHHHHHHHHHHHHHHHHHHCCEEEEEE
T ss_pred             CHHHCeeEECchhHHHHHHHHHCHHHHHhhcccCcEEEEEECCCeEecccceeccccCHHHHHHHHHHHHhCCCCCeeee
Confidence            88899999999  88897777777  778999999999999    56765555432    23322               


Q ss_pred             CChhhHhhhhhcccccccccCCCCCCCCccccccccccchhhhhHHhhhcCCCCeE---EEchhhHHHHHHHHHHHHHhC
Q psy14377        159 TSEQDARDKIWMVDSKGLIVKDRPEGGVTGHKVHYAKKHAPVKNLADVVKTVKPSI---LIGESCVNDVAGLLASLRITK  235 (848)
Q Consensus       159 ~~v~d~~~~ay~~~~~G~lYPkppd~gIr~edIavAk~fe~ek~Lle~lr~~iPvF---qhGTA~V~~lAgll~Al~~tg  235 (848)
                      .++++.+.   +++..-.++|  .+.+++.||++.|.||++++.+.+.+  ++|+|   +|||+ .++++|+++|++.+|
T Consensus       110 ldv~d~de---~~~~v~~l~~--~f~GinvED~T~P~k~~il~~l~~av--Nt~vf~dD~~gtg-ntd~aG~~~AL~~~g  181 (439)
T 2dvm_A          110 IKEQEPNK---FIDIVKAIAP--TFGGINLEDIASPKCFYILERLREEL--DIPVFHDDQQGTA-AVVLAGLLNALKVVG  181 (439)
T ss_dssp             CSCCSHHH---HHHHHHHTGG--GCSEEEECSCCTTHHHHHHHHHHHHC--SSCEEEHHHHHHH-HHHHHHHHHHHHHHT
T ss_pred             eecCCHHH---HHHHHHHhCc--cCcEEEEEeCCCchHHHHHHHHHHhc--CEEEEeCCCcEEe-ehHHHHHHHHHHHhC
Confidence            12211111   1222333445  66789999999999999999887754  79999   89999 555999999999999


Q ss_pred             CcCCCceEEEeccchHHHHHHHHHHHHHHhcCCChhhhcCcEEEEc----CCCcccCCCCCCC---CCccccccccccCC
Q psy14377        236 TRLSDNTILFQGAGEASLGIADLCVMAMQKEGTSEQDARDKIWMVD----SKGLIVKDRPEGG---VTGHKVHYAKKHAP  308 (848)
Q Consensus       236 ~~l~d~riv~~GAGaAg~gia~ll~~~m~~~G~s~~eA~~~i~~vD----~kGLi~~~r~~~~---l~~~k~~~a~~~~~  308 (848)
                      ++++++|+||+|||+||.+|+.+|...    |.+    +++||++|    ++|+++++.   .   +.+++.+|++....
T Consensus       182 ~~l~~~rvlvlGAGgAg~aia~~L~~~----G~~----~~~I~vvd~~~~R~G~~~~a~---~~~~L~~~~~~~a~~~~~  250 (439)
T 2dvm_A          182 KKISEITLALFGAGAAGFATLRILTEA----GVK----PENVRVVELVNGKPRILTSDL---DLEKLFPYRGWLLKKTNG  250 (439)
T ss_dssp             CCTTTCCEEEECCSHHHHHHHHHHHHT----TCC----GGGEEEEEEETTEEEECCTTS---CHHHHSTTCHHHHTTSCT
T ss_pred             CCccCCEEEEECccHHHHHHHHHHHHc----CCC----cCeEEEEEccCCCcCcccccc---chhHHHHHHHHHhhcccc
Confidence            999999999999999999999998865    876    38999999    999998762   2   33333333221100


Q ss_pred             cchhhhhhhccccccHHHHhhhcccccCcccccchhHHHHHhhccccccCCChhhHHHHHHhhcccceeEEEeccCceec
Q psy14377        309 VKNLADVVKTGMAFSIEERQALGIHGLLPAAVKSQDEQLHLCKLNVDRYEDPLNKYIYLQALAVKTDIRAIVVTDGERIL  388 (848)
Q Consensus       309 ~~~l~~~~n~g~~~~~~er~~~~~~G~~p~~v~~~~~q~~~~~~~~~~~~~~~~~~~~L~~l~~~~~~~~~~~~d~~~l~  388 (848)
                                                                                                      
T Consensus       251 --------------------------------------------------------------------------------  250 (439)
T 2dvm_A          251 --------------------------------------------------------------------------------  250 (439)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             ccccCCCCCCCcccccccHHHHHcCCCcCccCceeeEEccccccccCCC-CCCCHHHHHHHHhcCCCceEEecCCCCCcc
Q psy14377        389 GLGDLGAYGMGIPVGKLSLYTALAGIKPHQCLPITLDVGTNWRRAAAIP-QVFTADILKDMAAFNKRPIIFALSNPTSKA  467 (848)
Q Consensus       389 g~~~~g~~~~~~~~g~~~L~~al~g~kP~~~~~~~v~iG~~~~~~S~~~-g~FTeevvk~Ma~~~~rPIIFaLSNPt~~~  467 (848)
                                  .+...+|.++++++        ||+||+     |+.| |+|++++++.|+   ++||||+||||+  +
T Consensus       251 ------------~~~~~~L~e~l~~a--------DVlIna-----T~~~~G~~~~e~v~~m~---~~~iVfDLynP~--~  300 (439)
T 2dvm_A          251 ------------ENIEGGPQEALKDA--------DVLISF-----TRPGPGVIKPQWIEKMN---EDAIVFPLANPV--P  300 (439)
T ss_dssp             ------------TCCCSSHHHHHTTC--------SEEEEC-----SCCCSSSSCHHHHTTSC---TTCEEEECCSSS--C
T ss_pred             ------------ccccccHHHHhccC--------CEEEEc-----CCCccCCCChHHHHhcC---CCCEEEECCCCC--C
Confidence                        00011356677665        999997     5664 999999999987   799999999999  8


Q ss_pred             CCCHHHHhccCCCcEEEEeCCCCCCcccCCeEEecccchhhccCCeEecchhhhHHHhhccccccCccceeeccCcccHH
Q psy14377        468 ECTAEQAYVNTDGRGVFASGSPFDPVTYKGKTFTPGQEYVVELMPIVYTPTVGLACQKYGLIFRRPRGLFISIHDKGHIS  547 (848)
Q Consensus       468 E~tpe~a~~~T~G~ai~AtGsPf~pv~y~g~~~~~~q~nn~e~lPvvYTPGVG~acl~~~~i~r~p~gm~L~~~d~g~i~  547 (848)
                      ||.+++|++|  |++++|||+          ++.|+|+||++.     |||++++++.+++. +++++|+++      ..
T Consensus       301 t~~~~~A~~~--G~~ivatG~----------~ml~~Q~nn~~~-----FPGi~~g~l~~~a~-~i~~~m~~a------aa  356 (439)
T 2dvm_A          301 EILPEEAKKA--GARIVATGR----------SDYPNQINNLLG-----FPGIFRGALDVRAR-TITDSMIIA------AA  356 (439)
T ss_dssp             SSCHHHHHHH--TCSEECBSC----------SSSSSBCCGGGT-----HHHHHHHHHHTTCS-CCCHHHHHH------HH
T ss_pred             cchHHHHHHc--CCeEEcCCC----------chhHHHHHHHhc-----ccCchHHHHhcCCC-CCCHHHHHH------HH
Confidence            9999999999  889999998          356999999954     79999999999985 789999997      67


Q ss_pred             HHHhcCC
Q psy14377        548 EVLRNWP  554 (848)
Q Consensus       548 eiL~Nwp  554 (848)
                      +.|++..
T Consensus       357 ~ala~~~  363 (439)
T 2dvm_A          357 KAIASIV  363 (439)
T ss_dssp             HHHHHTS
T ss_pred             HHHHhhC
Confidence            7888763

>3gvp_A Adenosylhomocysteinase 3; protein CO-factor complex, hydrolase, NAD, one-carbon metabolism, phosphoprotein; HET: NAD; 2.25A {Homo sapiens} PDB: 3mtg_A*

Probab=97.27  E-value=0.00034  Score=78.42  Aligned_cols=134  Identities=11%  Similarity=0.179  Sum_probs=90.3

Q ss_pred             CCCcchhHHHHHHHHHHHHhhCCceeeeeecCCCcchHHH-------H--------------HHHcc-------cCcee-
Q psy14377        629 TTGQAYDDFIEEFMQAVVARYGQHVLIQFEDFANHSAFRF-------L--------------DTYRN-------RYCVF-  679 (848)
Q Consensus       629 ~~g~~y~~fvdefv~av~~~fGp~~~IqfEDf~~~naf~l-------L--------------~ryr~-------~~~~F-  679 (848)
                      .+-|+|+..+++.+..  ..++|+.++   |-+..=...+       +              .||+.       .+|+| 
T Consensus       112 ~~~~ey~~~~~~~~~~--~~~~p~~il---DdGgdl~~~~h~~~~~~~~~i~G~~EeTttGv~rl~~~~~~g~L~~Pvi~  186 (435)
T 3gvp_A          112 ESEDDFWWCIDRCVNV--EGWQPNMIL---DDGGDLTHWIYKKYPNMFKKIKGIVEESVTGVHRLYQLSKAGKLCVPAMN  186 (435)
T ss_dssp             CCHHHHHHHHHHHHCB--TTBCCSEEE---ESSSHHHHHHHHHCHHHHHTCCEEEECCHHHHHHHTCC--CCCCCSCEEE
T ss_pred             CCHHHHHHHHHHHHhc--cCCCCcEEE---ecchHHHHHHHHHhHHHHhhcceeEeccchhHHHHHHHHHcCCCCCCEEE
Confidence            3557777777765532  335676555   3343222211       1              44543       38999 


Q ss_pred             ---------ccCCchHHHHHHHHHHHHHhhhCCcCCCceEEecCcchhhHHHHHHHHHHHhccccccccc-CceecCCCC
Q psy14377        680 ---------NDDIQGTASVAVAGLLASLRITKTRLSDNTILFQGAGEGTASVAVAGLLASLRITKTRLSD-NTILFQGAG  749 (848)
Q Consensus       680 ---------nDDiQGTaaV~LAgllaAlr~t~~~l~d~riv~~GAG~A~~g~giA~ll~~~~~~~~~~~d-~g~i~~~r~  749 (848)
                               +|+++||+-++++|+..+   ++..+.+.+++|+|+|..  |.++|+.+...++ ++..+| ++.      
T Consensus       187 vnds~tK~~fDn~yGt~~s~~~gi~ra---t~~~L~GktV~ViG~G~I--Gk~vA~~Lra~Ga-~Viv~D~dp~------  254 (435)
T 3gvp_A          187 VNDSVTKQKFDNLYCCRESILDGLKRT---TDMMFGGKQVVVCGYGEV--GKGCCAALKAMGS-IVYVTEIDPI------  254 (435)
T ss_dssp             CTTCHHHHHHHTHHHHHHHHHHHHHHH---HCCCCTTCEEEEECCSHH--HHHHHHHHHHTTC-EEEEECSCHH------
T ss_pred             ecchhhhhhhhhhhhhHHHHHHHHHHh---hCceecCCEEEEEeeCHH--HHHHHHHHHHCCC-EEEEEeCChh------
Confidence                     899999999999999765   688999999999999999  9999999998876 344444 331      


Q ss_pred             CCchHHHhhhccccchhhccccCCCceEEeecC
Q psy14377        750 EGTASVAIAGLLASLRITKTRLSDNTILFQGSG  782 (848)
Q Consensus       750 ~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~s~  782 (848)
                       ........|.  ....+++++.++||++..++
T Consensus       255 -ra~~A~~~G~--~v~~Leeal~~ADIVi~atg  284 (435)
T 3gvp_A          255 -CALQACMDGF--RLVKLNEVIRQVDIVITCTG  284 (435)
T ss_dssp             -HHHHHHHTTC--EECCHHHHTTTCSEEEECSS
T ss_pred             -hhHHHHHcCC--EeccHHHHHhcCCEEEECCC
Confidence             0011112232  12457888999999999643

>3h9u_A Adenosylhomocysteinase; NAD CO-factor complex, structural genomics, SGC stockholm, S genomics consortium, SGC, hydrolase, NAD; HET: NAD ADN PG4; 1.90A {Trypanosoma brucei} PDB: 3g1u_A* 1b3r_A* 1k0u_A* 1ky4_A* 2h5l_A* 1xwf_A* 1d4f_A* 1ky5_A* 3nj4_A* 1li4_A* 1a7a_A*

Probab=97.14  E-value=0.0012  Score=74.13  Aligned_cols=59  Identities=20%  Similarity=0.258  Sum_probs=49.7

Q ss_pred             CCCCeE-------------EEchhhHHHHHHHHHHHHHhCCcCCCceEEEeccchHHHHHHHHHHHHHHhcCCChhhhcC
Q psy14377        209 TVKPSI-------------LIGESCVNDVAGLLASLRITKTRLSDNTILFQGAGEASLGIADLCVMAMQKEGTSEQDARD  275 (848)
Q Consensus       209 ~~iPvF-------------qhGTA~V~~lAgll~Al~~tg~~l~d~riv~~GAGaAg~gia~ll~~~m~~~G~s~~eA~~  275 (848)
                      ..+|+|             ++||+.+. +.+++.+   ++..|++.+++|+|.|..|.++|..+...    |.       
T Consensus       171 L~iPVinvndsvtk~~~Dn~~Gt~~sl-ldgi~ra---tg~~L~GktVgIiG~G~IG~~vA~~Lka~----Ga-------  235 (436)
T 3h9u_A          171 LTIPAMNVNDSVTKSKFDNLYGCRESL-VDGIKRA---TDVMIAGKTACVCGYGDVGKGCAAALRGF----GA-------  235 (436)
T ss_dssp             CCSCEEECTTSHHHHTTHHHHHHHHHH-HHHHHHH---HCCCCTTCEEEEECCSHHHHHHHHHHHHT----TC-------
T ss_pred             CCCceEeechhhhhhhhhccccchHHH-HHHHHHh---cCCcccCCEEEEEeeCHHHHHHHHHHHHC----CC-------
Confidence            468888             67999888 8999755   79999999999999999999999988754    73       


Q ss_pred             cEEEEcC
Q psy14377        276 KIWMVDS  282 (848)
Q Consensus       276 ~i~~vD~  282 (848)
                      +++.+|+
T Consensus       236 ~Viv~D~  242 (436)
T 3h9u_A          236 RVVVTEV  242 (436)
T ss_dssp             EEEEECS
T ss_pred             EEEEECC
Confidence            5777776

>3gvp_A Adenosylhomocysteinase 3; protein CO-factor complex, hydrolase, NAD, one-carbon metabolism, phosphoprotein; HET: NAD; 2.25A {Homo sapiens} PDB: 3mtg_A*

Probab=97.12  E-value=0.0023  Score=71.83  Aligned_cols=53  Identities=17%  Similarity=0.237  Sum_probs=45.4

Q ss_pred             EEchhhHHHHHHHHHHHHHhCCcCCCceEEEeccchHHHHHHHHHHHHHHhcCCChhhhcCcEEEEcC
Q psy14377        215 LIGESCVNDVAGLLASLRITKTRLSDNTILFQGAGEASLGIADLCVMAMQKEGTSEQDARDKIWMVDS  282 (848)
Q Consensus       215 qhGTA~V~~lAgll~Al~~tg~~l~d~riv~~GAGaAg~gia~ll~~~m~~~G~s~~eA~~~i~~vD~  282 (848)
                      +|||+.+. ++|+.++   ++..|.+.+++|+|+|..|.++|..+...    |.       +++.+|+
T Consensus       199 ~yGt~~s~-~~gi~ra---t~~~L~GktV~ViG~G~IGk~vA~~Lra~----Ga-------~Viv~D~  251 (435)
T 3gvp_A          199 LYCCRESI-LDGLKRT---TDMMFGGKQVVVCGYGEVGKGCCAALKAM----GS-------IVYVTEI  251 (435)
T ss_dssp             HHHHHHHH-HHHHHHH---HCCCCTTCEEEEECCSHHHHHHHHHHHHT----TC-------EEEEECS
T ss_pred             hhhhHHHH-HHHHHHh---hCceecCCEEEEEeeCHHHHHHHHHHHHC----CC-------EEEEEeC
Confidence            78999998 8998866   79999999999999999999999987754    73       5777665

>3h9u_A Adenosylhomocysteinase; NAD CO-factor complex, structural genomics, SGC stockholm, S genomics consortium, SGC, hydrolase, NAD; HET: NAD ADN PG4; 1.90A {Trypanosoma brucei} PDB: 3g1u_A* 1b3r_A* 1k0u_A* 1ky4_A* 2h5l_A* 1xwf_A* 1d4f_A* 1ky5_A* 3nj4_A* 1li4_A* 1a7a_A*

Probab=96.76  E-value=0.002  Score=72.30  Aligned_cols=92  Identities=15%  Similarity=0.254  Sum_probs=67.3

Q ss_pred             cCcee----------ccCCchHHHHHHHHHHHHHhhhCCcCCCceEEecCcchhhHHHHHHHHHHHhccccccccc-Cce
Q psy14377        675 RYCVF----------NDDIQGTASVAVAGLLASLRITKTRLSDNTILFQGAGEGTASVAVAGLLASLRITKTRLSD-NTI  743 (848)
Q Consensus       675 ~~~~F----------nDDiQGTaaV~LAgllaAlr~t~~~l~d~riv~~GAG~A~~g~giA~ll~~~~~~~~~~~d-~g~  743 (848)
                      .+|+|          .|++.||+.+++.+++.   .++..|.+.+++|+|.|..  |.++|+.+..+++ ++..+| +..
T Consensus       172 ~iPVinvndsvtk~~~Dn~~Gt~~slldgi~r---atg~~L~GktVgIiG~G~I--G~~vA~~Lka~Ga-~Viv~D~~p~  245 (436)
T 3h9u_A          172 TIPAMNVNDSVTKSKFDNLYGCRESLVDGIKR---ATDVMIAGKTACVCGYGDV--GKGCAAALRGFGA-RVVVTEVDPI  245 (436)
T ss_dssp             CSCEEECTTSHHHHTTHHHHHHHHHHHHHHHH---HHCCCCTTCEEEEECCSHH--HHHHHHHHHHTTC-EEEEECSCHH
T ss_pred             CCceEeechhhhhhhhhccccchHHHHHHHHH---hcCCcccCCEEEEEeeCHH--HHHHHHHHHHCCC-EEEEECCChh
Confidence            39999          89999999999999965   4689999999999999999  9999999998875 455454 221


Q ss_pred             ecCCCCCCchHHHhhhccccchhhccccCCCceEEeec
Q psy14377        744 LFQGAGEGTASVAIAGLLASLRITKTRLSDNTILFQGS  781 (848)
Q Consensus       744 i~~~r~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~s  781 (848)
                             ....-...|..  ...+++++.++||++..+
T Consensus       246 -------~a~~A~~~G~~--~~sL~eal~~ADVVilt~  274 (436)
T 3h9u_A          246 -------NALQAAMEGYQ--VLLVEDVVEEAHIFVTTT  274 (436)
T ss_dssp             -------HHHHHHHTTCE--ECCHHHHTTTCSEEEECS
T ss_pred             -------hhHHHHHhCCe--ecCHHHHHhhCCEEEECC
Confidence                   00011122321  125777888888888644

>4dio_A NAD(P) transhydrogenase subunit alpha PART 1; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.60A {Sinorhizobium meliloti}

Probab=96.33  E-value=0.0014  Score=72.80  Aligned_cols=133  Identities=17%  Similarity=0.154  Sum_probs=80.9

Q ss_pred             CCCCceEEEeccchhHHHHHHHHHHHHHhcCCCccccCCeEEEEcCCCccccCCCC-C----CC-------Chhhhhhcc
Q psy14377         11 RLSDNTILFQGAGEASLGIADLCVMAMQKEGTSEQDARDKIWMVDSKGLIVKDRPE-G----GV-------TGHKVHYAK   78 (848)
Q Consensus        11 ~i~d~kiV~~GAGaA~ia~a~L~~~am~~~G~~~e~~~~ni~m~DskGvi~~~R~d-~----~l-------~~~k~~~a~   78 (848)
                      .+...||+|+|+|.+|+++++++..    +|.       +|+++|+.........+ +    .+       .+.+..|++
T Consensus       187 ~v~~~kV~ViG~G~iG~~aa~~a~~----lGa-------~V~v~D~~~~~l~~~~~~G~~~~~~~~~~~~d~~~~~~ya~  255 (405)
T 4dio_A          187 TVPAAKIFVMGAGVAGLQAIATARR----LGA-------VVSATDVRPAAKEQVASLGAKFIAVEDEEFKAAETAGGYAK  255 (405)
T ss_dssp             EECCCEEEEECCSHHHHHHHHHHHH----TTC-------EEEEECSSTTHHHHHHHTTCEECCCCC--------------
T ss_pred             CcCCCEEEEECCcHHHHHHHHHHHH----CCC-------EEEEEcCCHHHHHHHHHcCCceeecccccccccccccchhh
Confidence            4788999999999999999999884    885       79999997643211111 0    00       011222443


Q ss_pred             cCC------CCCCHHHHhcccCCCchhh----------------hhccCCccccccccCC-ccccccccCCcCccCCcCc
Q psy14377         79 KHA------PVKNLADVVKTVKPSILIE----------------ELKGLSQRDFLSSWLN-RGPCLNCWGKRDFEQDKQG  135 (848)
Q Consensus        79 ~~~------~~~tL~ea~~~s~~~v~~g----------------~vk~M~~~piifA~sn-~~~~i~atG~~~fdypnQ~  135 (848)
                      +-.      ...+|+|++++  +|++++                |++.|.+..+|+-+|- .+-|+..| +|+..|  ..
T Consensus       256 e~s~~~~~~~~~~l~e~l~~--aDVVI~tvlipg~~ap~Lvt~emv~~Mk~GsVIVDvA~d~GG~~e~t-~~~~~~--~~  330 (405)
T 4dio_A          256 EMSGEYQVKQAALVAEHIAK--QDIVITTALIPGRPAPRLVTREMLDSMKPGSVVVDLAVERGGNIEGA-EAGKVT--EV  330 (405)
T ss_dssp             ---CHHHHHHHHHHHHHHHT--CSEEEECCCCSSSCCCCCBCHHHHTTSCTTCEEEETTGGGTCSBTTC-CTTEEE--EE
T ss_pred             hcchhhhhhhHhHHHHHhcC--CCEEEECCcCCCCCCCEEecHHHHhcCCCCCEEEEEeCCCCCCcccc-CCCCeE--EE
Confidence            110      12478999986  566543                9999999999999996 55566666 452223  24


Q ss_pred             cceeeecccCh-hhHHHHHHhhccC
Q psy14377        136 ISYSIHASLGI-ADLCVMAMQKEGT  159 (848)
Q Consensus       136 Nnv~vfp~Lgl-~~m~~~A~~ala~  159 (848)
                      |.|.++-+.++ +.+-..|++.++.
T Consensus       331 ~GV~~~gv~nlP~~vp~tAS~~ls~  355 (405)
T 4dio_A          331 GGVRIVGHLNVAGRIAASASLLYAK  355 (405)
T ss_dssp             TTEEEEECSSGGGGGHHHHHHHHHH
T ss_pred             CCEEEEEeCCCCccCHHHHHHHHHH
Confidence            55555544444 3444556666654

>4fcc_A Glutamate dehydrogenase; protein complex, rossmann fold, metabolic role, NAD, NADP, oxidoreductase; 2.00A {Escherichia coli O157} PDB: 4fhn_X 2yfg_A 3sbo_A 2yfg_E

Probab=95.96  E-value=0.037  Score=62.43  Aligned_cols=118  Identities=14%  Similarity=0.094  Sum_probs=92.3

Q ss_pred             CCCCcchhHHHHHHHHHHHHhhCCceeeeeecCCCcchHH---HHHHHc---ccC-cee----------ccCCchHHHHH
Q psy14377        628 RTTGQAYDDFIEEFMQAVVARYGQHVLIQFEDFANHSAFR---FLDTYR---NRY-CVF----------NDDIQGTASVA  690 (848)
Q Consensus       628 R~~g~~y~~fvdefv~av~~~fGp~~~IqfEDf~~~naf~---lL~ryr---~~~-~~F----------nDDiQGTaaV~  690 (848)
                      ..+..|-..|...|+..+.+..||++-|--.|++.. +.+   +.+.|+   +.. +||          .+.-.-||-=+
T Consensus       140 ~~s~~El~R~~~~f~~eL~~~iG~d~dvpa~Dig~~-~~em~~~~~~y~~~~~~~~~v~TGk~~~~GGs~~r~~aTg~Gv  218 (450)
T 4fcc_A          140 GKSEGEVMRFCQALMTELYRHLGADTDVPAGDIGVG-GREVGFMAGMMKKLSNNTACVFTGKGLSFGGSLIRPEATGYGL  218 (450)
T ss_dssp             TCCHHHHHHHHHHHHHHHGGGCBTTTEEEECBTTBC-HHHHHHHHHHHHHHHTCCSCCCSSCCGGGTCCTTTTTHHHHHH
T ss_pred             cCCHHHHHHHHHHHHHHhhheecCCCCCCccceeec-chhhhhhhhhhhhccCCCceeecCCCcccCCCCCCCCceeeeH
Confidence            345667788899999999999999999999999753 222   334443   332 232          23334577777


Q ss_pred             HHHHHHHHhhhCCcCCCceEEecCcchhhHHHHHHHHHHHhccccccccc-CceecCCC
Q psy14377        691 VAGLLASLRITKTRLSDNTILFQGAGEGTASVAVAGLLASLRITKTRLSD-NTILFQGA  748 (848)
Q Consensus       691 LAgllaAlr~t~~~l~d~riv~~GAG~A~~g~giA~ll~~~~~~~~~~~d-~g~i~~~r  748 (848)
                      .-++-.+++..+.+|++.|++|-|.|.-  |...|+.|.+.+.+-+.++| +|.||.-.
T Consensus       219 ~~~~~~~~~~~~~~l~Gk~vaVQG~GnV--G~~aa~~L~e~GakvVavsD~~G~i~d~~  275 (450)
T 4fcc_A          219 VYFTEAMLKRHGMGFEGMRVSVSGSGNV--AQYAIEKAMEFGARVITASDSSGTVVDES  275 (450)
T ss_dssp             HHHHHHHHHHTTCCSTTCEEEEECCSHH--HHHHHHHHHHTTCEEEEEEETTEEEECTT
T ss_pred             HHHHHHHHHHcCCCcCCCEEEEeCCChH--HHHHHHHHHhcCCeEEEEecCCceEEeCC
Confidence            7888889999999999999999999999  99999999999988888888 99998543

>1x13_A NAD(P) transhydrogenase subunit alpha; NAD(H)-binding domain, rossmann fold, oxidoreductase; 1.90A {Escherichia coli} PDB: 1x14_A* 1x15_A* 2bru_A*

Probab=95.85  E-value=0.008  Score=66.22  Aligned_cols=149  Identities=19%  Similarity=0.267  Sum_probs=84.7

Q ss_pred             CcccHHHHHhcCCCCCccEEEEecCceeeccCCCCCC--CCCccccceeeeeecCCCCCCceeeEEeeccCCcccccCCc
Q psy14377        542 DKGHISEVLRNWPETDIRAIVVTDGERILGLGDLGAY--GMGIPVGKLSLYTALAGIKPHQCLPITLDVGTNTQQLLDDP  619 (848)
Q Consensus       542 d~g~i~eiL~Nwp~~d~~viVVTDG~rILGLGDlG~~--gmgIpvGKl~Ly~a~aGI~p~~~LPv~LDvGTnn~~ll~Dp  619 (848)
                      ++..++++.++.    .+|+|.++++..+|++|.+..  |+.|.-+ ..+|. |         +++|.+.        +|
T Consensus        26 tP~~v~~L~~~G----~~V~ve~~ag~~~gf~d~~y~~aGa~i~~~-~~~~~-a---------diil~vk--------~p   82 (401)
T 1x13_A           26 TPKTVEQLLKLG----FTVAVESGAGQLASFDDKAFVQAGAEIVEG-NSVWQ-S---------EIILKVN--------AP   82 (401)
T ss_dssp             CHHHHHHHHHTT----CEEEEETTTTGGGTCCHHHHHHHTCEEECG-GGGGS-S---------SEEECSS--------CC
T ss_pred             CHHHHHHHHHCC----CEEEEEECCCcccCCChHHHHHCCCEEecc-HHHhc-C---------CeEEEeC--------CC
Confidence            344556666553    368999999999999998876  5555545 44554 1         5667553        22


Q ss_pred             ccccccccCCCCcchhHHHHHHHHHHHHhhCCceeeeeecCCCcchHHHHHHHccc-Cceec-cCC------c----hHH
Q psy14377        620 LYIGLRQRRTTGQAYDDFIEEFMQAVVARYGQHVLIQFEDFANHSAFRFLDTYRNR-YCVFN-DDI------Q----GTA  687 (848)
Q Consensus       620 ~y~g~r~~R~~g~~y~~fvdefv~av~~~fGp~~~IqfEDf~~~naf~lL~ryr~~-~~~Fn-DDi------Q----GTa  687 (848)
                                        ..+.+..+++   ...+|.+=..+.  .-..++.++++ +.+|+ +.+      |    .+.
T Consensus        83 ------------------~~~~i~~l~~---~~~li~~~~~~~--d~~~~~al~~~gI~v~~~e~v~~~~~a~~l~~l~~  139 (401)
T 1x13_A           83 ------------------LDDEIALLNP---GTTLVSFIWPAQ--NPELMQKLAERNVTVMAMDSVPRISRAQSLDALSS  139 (401)
T ss_dssp             ------------------CHHHHTTCCT---TCEEEECCCGGG--CHHHHHHHHHTTCEEEEGGGCCCSGGGGGGCHHHH
T ss_pred             ------------------CHHHHHHhcC---CCcEEEEecCCC--CHHHHHHHHHCCCEEEEeehhhhhhhhcccchHHH
Confidence                              0122222221   122232222221  12233444443 66662 222      2    455


Q ss_pred             HHHHHHHHHHHhh----hCC----------cCCCceEEecCcchhhHHHHHHHHHHHhccccccccc
Q psy14377        688 SVAVAGLLASLRI----TKT----------RLSDNTILFQGAGEGTASVAVAGLLASLRITKTRLSD  740 (848)
Q Consensus       688 aV~LAgllaAlr~----t~~----------~l~d~riv~~GAG~A~~g~giA~ll~~~~~~~~~~~d  740 (848)
                      ...+|| .+|++.    .++          .+...+++|+|+|.+  |.++++.+..+++ ++.++|
T Consensus       140 ~a~~ag-~~av~~~~~~~~~~~~~~~~~~g~l~g~~V~ViGaG~i--G~~aa~~a~~~Ga-~V~v~D  202 (401)
T 1x13_A          140 MANIAG-YRAIVEAAHEFGRFFTGQITAAGKVPPAKVMVIGAGVA--GLAAIGAANSLGA-IVRAFD  202 (401)
T ss_dssp             HHHHHH-HHHHHHHHHHCSSCSSCEEETTEEECCCEEEEECCSHH--HHHHHHHHHHTTC-EEEEEC
T ss_pred             HHHHHH-HHHHHHHHHhcccccCCceeeccCcCCCEEEEECCCHH--HHHHHHHHHHCCC-EEEEEc
Confidence            555555 333332    222          366899999999999  9999999998886 555555

>3k92_A NAD-GDH, NAD-specific glutamate dehydrogenase; ROCG, oxidoreductase; 2.30A {Bacillus subtilis} PDB: 3k8z_A

Probab=95.80  E-value=0.031  Score=62.57  Aligned_cols=122  Identities=16%  Similarity=0.207  Sum_probs=94.2

Q ss_pred             CCCcchhHHHHHHHHHHHHhhCCceeeeeecCCCc-chHH-HHHHHcccC-----cee----------ccCCchHHHHHH
Q psy14377        629 TTGQAYDDFIEEFMQAVVARYGQHVLIQFEDFANH-SAFR-FLDTYRNRY-----CVF----------NDDIQGTASVAV  691 (848)
Q Consensus       629 ~~g~~y~~fvdefv~av~~~fGp~~~IqfEDf~~~-naf~-lL~ryr~~~-----~~F----------nDDiQGTaaV~L  691 (848)
                      .+..|-..|...|++++.+--||+.-|-=+|++.. .-.. +.+.|+...     .++          .|--.-||-=+.
T Consensus       126 ~s~~El~r~~r~f~~~l~~~iG~~~dipApDvgt~~~~m~~~~~~y~~~~g~~~~~~vTGkp~~~GGs~~r~~aTg~Gv~  205 (424)
T 3k92_A          126 MSFGELERLSRGYVRAISQIVGPTKDIPAPDVYTNSQIMAWMMDEYSRLREFDSPGFITGKPLVLGGSQGRETATAQGVT  205 (424)
T ss_dssp             SCHHHHHHHHHHHHHHHGGGCBTTTEECCBCTTCCHHHHHHHHHHHHHHHTSCCGGGCSSCCGGGTCCTTTTTHHHHHHH
T ss_pred             CCHHHHHHHHHHHHHHHHHhcCCCCCccCCcCCCCHHHHHHHHHHHHHHhCCCCcceeecccccCCCcCCCcccHHHHHH
Confidence            34456677889999999998899888888999863 2222 456675321     122          334456888888


Q ss_pred             HHHHHHHhhhCCcCCCceEEecCcchhhHHHHHHHHHHHhccccccccc-CceecCCCCCCchH
Q psy14377        692 AGLLASLRITKTRLSDNTILFQGAGEGTASVAVAGLLASLRITKTRLSD-NTILFQGAGEGTAS  754 (848)
Q Consensus       692 AgllaAlr~t~~~l~d~riv~~GAG~A~~g~giA~ll~~~~~~~~~~~d-~g~i~~~r~~~~~~  754 (848)
                      .++-++++..|.+|++.||+|.|.|..  |...|++|.+.+.+-+.++| +|.||.  ++|.+.
T Consensus       206 ~~~~~~~~~~g~~l~g~~vaVqG~GnV--G~~aa~~l~e~GakVVavsD~~G~iyd--~~GlD~  265 (424)
T 3k92_A          206 ICIEEAVKKKGIKLQNARIIIQGFGNA--GSFLAKFMHDAGAKVIGISDANGGLYN--PDGLDI  265 (424)
T ss_dssp             HHHHHHHHHTTCCGGGCEEEEECCSHH--HHHHHHHHHHHTCEEEEEECSSCEEEC--TTCCCH
T ss_pred             HHHHHHHHHcCCCcccCEEEEECCCHH--HHHHHHHHHHCCCEEEEEECCCCcEEC--CCCCCH
Confidence            888899999999999999999999999  99999999999987778999 999994  455553

>3ond_A Adenosylhomocysteinase; plant protein, enzyme-substrate complex, NAD cofactor, regul SAM-dependent methylation reactions; HET: NAD ADN; 1.17A {Lupinus luteus} PDB: 3one_A* 3onf_A*

Probab=95.41  E-value=0.019  Score=65.28  Aligned_cols=93  Identities=17%  Similarity=0.302  Sum_probs=68.2

Q ss_pred             cCcee----------ccCCchHHHHHHHHHHHHHhhhCCcCCCceEEecCcchhhHHHHHHHHHHHhccccccccc-Cce
Q psy14377        675 RYCVF----------NDDIQGTASVAVAGLLASLRITKTRLSDNTILFQGAGEGTASVAVAGLLASLRITKTRLSD-NTI  743 (848)
Q Consensus       675 ~~~~F----------nDDiQGTaaV~LAgllaAlr~t~~~l~d~riv~~GAG~A~~g~giA~ll~~~~~~~~~~~d-~g~  743 (848)
                      .+|+|          .|+++||+-.++.++.   |.++..|.+.+++|.|+|..  |.++|+.+...++ ++.++| +..
T Consensus       226 ~iPvinvnDs~tK~~fDn~yGt~~sl~dgi~---r~tg~~L~GKtVvVtGaGgI--G~aiA~~Laa~GA-~Viv~D~~~~  299 (488)
T 3ond_A          226 LFPAINVNDSVTKSKFDNLYGCRHSLPDGLM---RATDVMIAGKVAVVAGYGDV--GKGCAAALKQAGA-RVIVTEIDPI  299 (488)
T ss_dssp             CSCEEECTTSHHHHTTHHHHHHHHHHHHHHH---HHHCCCCTTCEEEEECCSHH--HHHHHHHHHHTTC-EEEEECSCHH
T ss_pred             CCceecccchhhhhHhhhhccccHHHHHHHH---HHcCCcccCCEEEEECCCHH--HHHHHHHHHHCCC-EEEEEcCCHH
Confidence            48999          7899999999998886   67889999999999999988  9999999999886 555444 221


Q ss_pred             ecCCCCCCchHHHhhhccccchhhccccCCCceEEeecC
Q psy14377        744 LFQGAGEGTASVAIAGLLASLRITKTRLSDNTILFQGSG  782 (848)
Q Consensus       744 i~~~r~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~s~  782 (848)
                             .-......|.  +-..+++.+..+|+++..++
T Consensus       300 -------~a~~Aa~~g~--dv~~lee~~~~aDvVi~atG  329 (488)
T 3ond_A          300 -------CALQATMEGL--QVLTLEDVVSEADIFVTTTG  329 (488)
T ss_dssp             -------HHHHHHHTTC--EECCGGGTTTTCSEEEECSS
T ss_pred             -------HHHHHHHhCC--ccCCHHHHHHhcCEEEeCCC
Confidence                   1111112232  22345777888998886554

>3aoe_E Glutamate dehydrogenase; rossmann fold, NADH, oxidoreductase; 2.60A {Thermus thermophilus}

Probab=95.38  E-value=0.071  Score=59.62  Aligned_cols=120  Identities=18%  Similarity=0.171  Sum_probs=91.3

Q ss_pred             CCcchhHHHHHHHHHHHHhhCCceeeeeecCCCcc--hHHHHHHHccc-----Ccee----------ccCCchHHHHHHH
Q psy14377        630 TGQAYDDFIEEFMQAVVARYGQHVLIQFEDFANHS--AFRFLDTYRNR-----YCVF----------NDDIQGTASVAVA  692 (848)
Q Consensus       630 ~g~~y~~fvdefv~av~~~fGp~~~IqfEDf~~~n--af~lL~ryr~~-----~~~F----------nDDiQGTaaV~LA  692 (848)
                      +..|-..|...|++++.+.-||+.-|-=+|++..-  ---+.++|+..     -.++          .+.-.-||-=+.-
T Consensus       124 s~~El~r~~r~f~~~l~~~iGp~~dvpA~DvGt~~~~m~~~~~~y~~~~~~~~~~~vtGk~~~~GGs~~r~~aTg~Gv~~  203 (419)
T 3aoe_E          124 SPQELERLVRRYTAELVGLIGPDSDILGPDLGADQQVMAWIMDTYSMTVGSTVPGVVTGKPHALGGSEGRDDAAGLGALL  203 (419)
T ss_dssp             CHHHHHHHHHHHHHHHTTTCBTTTEEEEEBTTBCHHHHHHHHHHHHHHHTSCCGGGBSSCCGGGTCCSSCSCHHHHHHHH
T ss_pred             CHHHHHHHHHHHHHHHHHhcCCCCEEECCCCCCCHHHHHHHHHHHHHhhCCCCCCeeeccchhcCCCCCCccchHHHHHH
Confidence            44556778899999999988899999999998642  12345666331     0122          2333457766777


Q ss_pred             HHHHHHhhhCCcCCCceEEecCcchhhHHHHHHHHHHHhccccccccc-CceecCCCCCCch
Q psy14377        693 GLLASLRITKTRLSDNTILFQGAGEGTASVAVAGLLASLRITKTRLSD-NTILFQGAGEGTA  753 (848)
Q Consensus       693 gllaAlr~t~~~l~d~riv~~GAG~A~~g~giA~ll~~~~~~~~~~~d-~g~i~~~r~~~~~  753 (848)
                      ++-.+++-.|.+|++.|++|.|.|.-  |...|++|.+.+.+-+.++| +|.||..  .|.+
T Consensus       204 ~~~~~~~~~g~~l~gk~vaVqG~GnV--G~~~a~~L~~~GakVVavsD~~G~i~dp--~Gld  261 (419)
T 3aoe_E          204 VLEALAKRRGLDLRGARVVVQGLGQV--GAAVALHAERLGMRVVAVATSMGGMYAP--EGLD  261 (419)
T ss_dssp             HHHHHHHHHTCCCTTCEEEEECCSHH--HHHHHHHHHHTTCEEEEEEETTEEEECT--TCCC
T ss_pred             HHHHHHHhcCCCccCCEEEEECcCHH--HHHHHHHHHHCCCEEEEEEcCCCeEECC--CCCC
Confidence            78888888999999999999999999  99999999999877777999 9999964  4444

>3ef6_A Toluene 1,2-dioxygenase system ferredoxin--NAD(+) reductase; FAD binding protein, NADH binding protein, aromatic hydrocar catabolism, FAD; HET: FAD; 1.80A {Pseudomonas putida} PDB: 4emi_A* 4emj_A*

Probab=95.27  E-value=0.11  Score=56.00  Aligned_cols=41  Identities=22%  Similarity=0.348  Sum_probs=32.3

Q ss_pred             eEEEeccchhHHHHHHHHHHHHHhcCCCccccCCeEEEEcCCCccccCCC
Q psy14377         16 TILFQGAGEASLGIADLCVMAMQKEGTSEQDARDKIWMVDSKGLIVKDRP   65 (848)
Q Consensus        16 kiV~~GAGaA~ia~a~L~~~am~~~G~~~e~~~~ni~m~DskGvi~~~R~   65 (848)
                      +|||+|||.||++||.-|..    .|.+     -+|.++|+.....-.|+
T Consensus         4 ~vvIIGaG~AGl~aA~~L~~----~g~~-----~~V~li~~~~~~~y~~~   44 (410)
T 3ef6_A            4 HVAIIGNGVGGFTTAQALRA----EGFE-----GRISLIGDEPHLPYDRP   44 (410)
T ss_dssp             EEEEECCSHHHHHHHHHHHH----TTCC-----SEEEEEECSSSSSBCSG
T ss_pred             CEEEEcccHHHHHHHHHHHc----cCcC-----CeEEEEECCCCCCcCCc
Confidence            89999999999999998874    7754     37999998765544444

>2bma_A Glutamate dehydrogenase (NADP+); malaria, drug design, analysis, oligomer organization, oxidoreductase; 2.7A {Plasmodium falciparum}

Probab=95.09  E-value=0.12  Score=58.74  Aligned_cols=120  Identities=18%  Similarity=0.217  Sum_probs=89.1

Q ss_pred             CCcchhHHHHHHHHHHHHhhCCceeeeeecCCCcch--HHHHHHHccc--C--cee----------ccCCchHHHHHHHH
Q psy14377        630 TGQAYDDFIEEFMQAVVARYGQHVLIQFEDFANHSA--FRFLDTYRNR--Y--CVF----------NDDIQGTASVAVAG  693 (848)
Q Consensus       630 ~g~~y~~fvdefv~av~~~fGp~~~IqfEDf~~~na--f~lL~ryr~~--~--~~F----------nDDiQGTaaV~LAg  693 (848)
                      +..+...|-..|+..+.+..||..-|-=+|++..-.  --+.++|+..  .  .|+          .++-.-||-=+.-+
T Consensus       159 S~~El~r~~r~f~~~L~~~iGp~~DvpApDvGt~~~em~~~~~~y~~~~~~~~gvvTGKp~~~GGs~~r~~aTg~Gv~~~  238 (470)
T 2bma_A          159 SDNEILKFCQAFMNELYRHIGPCTDVPAGDIGVGGREIGYLYGQYKKIVNSFNGTLTGKNVKWGGSNLRVEATGYGLVYF  238 (470)
T ss_dssp             CHHHHHHHHHHHHHHHGGGCBTTTEEEECCSSCCHHHHHHHHHHHHHHHCCCSCSSSSCCGGGTCCTTTTTHHHHHHHHH
T ss_pred             CHHHHHHHHHHHHHHhhhccCCCCCccCCCCCCChHHHHHHHHHHHHhcCCcccEEeCCCccCCCCCCccccchHHHHHH
Confidence            344556777779999988889999999999986321  1245566531  1  111          12334566666667


Q ss_pred             HHHHHhhhCCcCCCceEEecCcchhhHHHHHHHHHHHhccccccccc-CceecCCCCCCch
Q psy14377        694 LLASLRITKTRLSDNTILFQGAGEGTASVAVAGLLASLRITKTRLSD-NTILFQGAGEGTA  753 (848)
Q Consensus       694 llaAlr~t~~~l~d~riv~~GAG~A~~g~giA~ll~~~~~~~~~~~d-~g~i~~~r~~~~~  753 (848)
                      +-.+++..|.+|++.|++|.|.|.-  |...|+.|.+.+.+-+.++| +|.||.  ++|.+
T Consensus       239 ~~~~l~~~G~~l~g~~vaVqG~GnV--G~~~a~~L~~~GakvVavsD~~G~i~d--p~Gid  295 (470)
T 2bma_A          239 VLEVLKSLNIPVEKQTAVVSGSGNV--ALYCVQKLLHLNVKVLTLSDSNGYVYE--PNGFT  295 (470)
T ss_dssp             HHHHHHTTTCCGGGCEEEEECSSHH--HHHHHHHHHHTTCEECEEEETTEEEEC--SSCCC
T ss_pred             HHHHHHhccCCcCCCEEEEECCcHH--HHHHHHHHHHCCCEEEEEEeCCceEEC--CCCCC
Confidence            7788888899999999999999999  99999999999987777999 999986  45553

>3klj_A NAD(FAD)-dependent dehydrogenase, NIRB-family (N- domain); FAD-binding protein, GR-fold, oxidoreductase; HET: FAD; 2.10A {Clostridium acetobutylicum}

Probab=94.99  E-value=0.057  Score=58.40  Aligned_cols=42  Identities=31%  Similarity=0.447  Sum_probs=31.2

Q ss_pred             CCceEEEeccchhHHHHHHHHHHHHHhcCCCccccCCeEEEEcCCCccccCCC
Q psy14377         13 SDNTILFQGAGEASLGIADLCVMAMQKEGTSEQDARDKIWMVDSKGLIVKDRP   65 (848)
Q Consensus        13 ~d~kiV~~GAGaA~ia~a~L~~~am~~~G~~~e~~~~ni~m~DskGvi~~~R~   65 (848)
                      +.-||||+|||.||+++|+-|.    ..|       -+|.++|++.-+.-.|.
T Consensus         8 ~~~~~vIvGgG~AGl~aA~~L~----~~~-------~~itlie~~~~~~y~~~   49 (385)
T 3klj_A            8 KSTKILILGAGPAGFSAAKAAL----GKC-------DDITMINSEKYLPYYRP   49 (385)
T ss_dssp             CBCSEEEECCSHHHHHHHHHHT----TTC-------SCEEEECSSSSCCBCGG
T ss_pred             CCCCEEEEcCcHHHHHHHHHHh----CCC-------CEEEEEECCCCCCcccC
Confidence            3469999999999999999763    234       37999998765443344

>3p2y_A Alanine dehydrogenase/pyridine nucleotide transhy; seattle structural genomics center for infectious disease, S tuberculosis; 1.82A {Mycobacterium smegmatis str}

Probab=94.92  E-value=0.013  Score=64.80  Aligned_cols=134  Identities=16%  Similarity=0.142  Sum_probs=81.5

Q ss_pred             CCCCceEEEeccchhHHHHHHHHHHHHHhcCCCccccCCeEEEEcCCCccccCCCC-C-----------CCChhhhh---
Q psy14377         11 RLSDNTILFQGAGEASLGIADLCVMAMQKEGTSEQDARDKIWMVDSKGLIVKDRPE-G-----------GVTGHKVH---   75 (848)
Q Consensus        11 ~i~d~kiV~~GAGaA~ia~a~L~~~am~~~G~~~e~~~~ni~m~DskGvi~~~R~d-~-----------~l~~~k~~---   75 (848)
                      .+...|++|+|+|.+|..+++++..    +|.       +|+++|+..--...-.+ +           +.+.+.++   
T Consensus       181 ~v~~~kV~ViG~G~iG~~aa~~a~~----lGa-------~V~v~D~~~~~l~~~~~lGa~~~~l~~~~~~~~gya~~~~~  249 (381)
T 3p2y_A          181 TVKPASALVLGVGVAGLQALATAKR----LGA-------KTTGYDVRPEVAEQVRSVGAQWLDLGIDAAGEGGYARELSE  249 (381)
T ss_dssp             EECCCEEEEESCSHHHHHHHHHHHH----HTC-------EEEEECSSGGGHHHHHHTTCEECCCC-------------CH
T ss_pred             CcCCCEEEEECchHHHHHHHHHHHH----CCC-------EEEEEeCCHHHHHHHHHcCCeEEeccccccccccchhhhhH
Confidence            3678899999999999999999884    784       79999987531110000 0           01111111   


Q ss_pred             -hcccCCCCCCHHHHhcccCCCchhh----------------hhccCCccccccccCC-ccccccccCCcCccCCcCccc
Q psy14377         76 -YAKKHAPVKNLADVVKTVKPSILIE----------------ELKGLSQRDFLSSWLN-RGPCLNCWGKRDFEQDKQGIS  137 (848)
Q Consensus        76 -~a~~~~~~~tL~ea~~~s~~~v~~g----------------~vk~M~~~piifA~sn-~~~~i~atG~~~fdypnQ~Nn  137 (848)
                       |...+  ..+|+|++++  +|+++.                |++.|.+..+++-+|- .+-|+..| +|  +-+-..|.
T Consensus       250 ~~~~~~--~~~l~e~l~~--aDIVI~tv~iPg~~ap~Lvt~emv~~MkpGsVIVDvA~d~GG~~e~t-~~--~~~~~~~g  322 (381)
T 3p2y_A          250 AERAQQ--QQALEDAITK--FDIVITTALVPGRPAPRLVTAAAATGMQPGSVVVDLAGETGGNCELT-EP--GRTIVHHG  322 (381)
T ss_dssp             HHHHHH--HHHHHHHHTT--CSEEEECCCCTTSCCCCCBCHHHHHTSCTTCEEEETTGGGTCSBTTC-CT--TCEEEETT
T ss_pred             HHHhhh--HHHHHHHHhc--CCEEEECCCCCCcccceeecHHHHhcCCCCcEEEEEeCCCCCccccc-cC--CCeEEECC
Confidence             11111  2368888885  444432                9999999999998886 55676666 55  21233455


Q ss_pred             eeeecccCh-hhHHHHHHhhccCChh
Q psy14377        138 YSIHASLGI-ADLCVMAMQKEGTSEQ  162 (848)
Q Consensus       138 v~vfp~Lgl-~~m~~~A~~ala~~v~  162 (848)
                      |.++-+.++ +.+-..|++.++..+.
T Consensus       323 V~~~~v~nlP~~vp~tAS~~~s~~l~  348 (381)
T 3p2y_A          323 VTITSPLNLPATMPEHASELYAKNVT  348 (381)
T ss_dssp             EEEECCSCTGGGSHHHHHHHHHHHHH
T ss_pred             EEEEeeCCCchhhHHHHHHHHHHHHH
Confidence            555555555 4555667777775443

>3kd9_A Coenzyme A disulfide reductase; PSI-II, NYSGXRC, oxidoreductase, structural genomics structure initiative; 2.75A {Pyrococcus horikoshii}

Probab=94.57  E-value=0.2  Score=54.50  Aligned_cols=39  Identities=13%  Similarity=0.154  Sum_probs=30.3

Q ss_pred             CCceEEEeccchhHHHHHHHHHHHHHhcCCCccccCCeEEEEcCCCcc
Q psy14377         13 SDNTILFQGAGEASLGIADLCVMAMQKEGTSEQDARDKIWMVDSKGLI   60 (848)
Q Consensus        13 ~d~kiV~~GAGaA~ia~a~L~~~am~~~G~~~e~~~~ni~m~DskGvi   60 (848)
                      +..+|||+|||.||+++|.-|..    .|-.     -+|.++|+...+
T Consensus         2 ~~~~VvIIGgG~aGl~aA~~L~~----~~~~-----~~V~vie~~~~~   40 (449)
T 3kd9_A            2 SLKKVVIIGGGAAGMSAASRVKR----LKPE-----WDVKVFEATEWV   40 (449)
T ss_dssp             CCCEEEEECCSHHHHHHHHHHHH----HCTT-----SEEEEECSSSCC
T ss_pred             CcCcEEEECCcHHHHHHHHHHHH----hCcC-----CCEEEEECCCcc
Confidence            34689999999999999998874    4321     389999987644

>3n58_A Adenosylhomocysteinase; ssgcid, hydrolase, structural genomics, seattle structural G center for infectious disease; HET: ADN NAD; 2.39A {Brucella melitensis biovar abortus}

Probab=93.97  E-value=0.34  Score=54.93  Aligned_cols=53  Identities=21%  Similarity=0.238  Sum_probs=42.7

Q ss_pred             EEchhhHHHHHHHHHHHHHhCCcCCCceEEEeccchHHHHHHHHHHHHHHhcCCChhhhcCcEEEEcC
Q psy14377        215 LIGESCVNDVAGLLASLRITKTRLSDNTILFQGAGEASLGIADLCVMAMQKEGTSEQDARDKIWMVDS  282 (848)
Q Consensus       215 qhGTA~V~~lAgll~Al~~tg~~l~d~riv~~GAGaAg~gia~ll~~~m~~~G~s~~eA~~~i~~vD~  282 (848)
                      ++||.-.. +.|+.   |.++..|...+++|+|.|..|.++|+.+...    |+       +++.+|+
T Consensus       226 ~yG~~esl-vdgI~---Ratg~~L~GKTVgVIG~G~IGr~vA~~lraf----Ga-------~Viv~d~  278 (464)
T 3n58_A          226 KYGCKESL-VDGIR---RGTDVMMAGKVAVVCGYGDVGKGSAQSLAGA----GA-------RVKVTEV  278 (464)
T ss_dssp             HHHHHHHH-HHHHH---HHHCCCCTTCEEEEECCSHHHHHHHHHHHHT----TC-------EEEEECS
T ss_pred             hhcchHHH-HHHHH---HhcCCcccCCEEEEECcCHHHHHHHHHHHHC----CC-------EEEEEeC
Confidence            57887777 77776   5589999999999999999999999987754    73       5777654

>2yfq_A Padgh, NAD-GDH, NAD-specific glutamate dehydrogenase; oxidoreductase; 2.94A {Peptoniphilus asaccharolyticus}

Probab=93.87  E-value=0.24  Score=55.46  Aligned_cols=117  Identities=13%  Similarity=0.170  Sum_probs=89.4

Q ss_pred             CCcchhHHHHHHHHHHHHhhCCceeeeeecCCCcc--hHHHHHHHccc---C---cee----------ccCCchHHHHHH
Q psy14377        630 TGQAYDDFIEEFMQAVVARYGQHVLIQFEDFANHS--AFRFLDTYRNR---Y---CVF----------NDDIQGTASVAV  691 (848)
Q Consensus       630 ~g~~y~~fvdefv~av~~~fGp~~~IqfEDf~~~n--af~lL~ryr~~---~---~~F----------nDDiQGTaaV~L  691 (848)
                      +..|-..|...|++++.+.-||+.-|-=+|++..-  ---+.++|+..   .   .++          .+.-.-||-=+.
T Consensus       117 s~~el~r~~r~f~~~l~~~iG~~~dvpA~Dvgt~~~~m~~~~~~y~~~~~~~~~~~~vtGk~~~~GGs~~r~~aTg~Gv~  196 (421)
T 2yfq_A          117 SERELEQLSRGWVRGLYKYLGDRIDIPAPDVNTNGQIMSWFVDEYVKLNGERMDIGTFTGKPVAFGGSEGRNEATGFGVA  196 (421)
T ss_dssp             CHHHHHHHHHHHHHHHGGGCBTTTEEEEECTTCCHHHHHHHHHHHHHHTTTCCCGGGSCSCCGGGTCCTTCTTHHHHHHH
T ss_pred             CHHHHHHHHHHHHHHHHHhcCCCcEEECCCCCCCHHHHHHHHHHHHHhhCCCCCCCEEecCchhcCCCCCCCcchHHHHH
Confidence            34456778899999999988999999999999742  12356666531   1   122          223345666666


Q ss_pred             HHHHHHHhhhCCcCCCceEEecCcchhhHHHHHHHHHHHhccccccccc-C-----ceecCCC
Q psy14377        692 AGLLASLRITKTRLSDNTILFQGAGEGTASVAVAGLLASLRITKTRLSD-N-----TILFQGA  748 (848)
Q Consensus       692 AgllaAlr~t~~~l~d~riv~~GAG~A~~g~giA~ll~~~~~~~~~~~d-~-----g~i~~~r  748 (848)
                      -++-.+++-.|.+|++.||+|.|.|.-  |...|++|.+.+.+-+.++| +     |.+|...
T Consensus       197 ~~~~~~~~~~g~~l~g~~vaVqG~GnV--G~~~a~~L~~~GakvVavsD~~~~~~~G~i~d~~  257 (421)
T 2yfq_A          197 VVVRESAKRFGIKMEDAKIAVQGFGNV--GTFTVKNIERQGGKVCAIAEWDRNEGNYALYNEN  257 (421)
T ss_dssp             HHHHHHHHHTTCCGGGSCEEEECCSHH--HHHHHHHHHHTTCCEEECCBCCSSSCSBCCBCSS
T ss_pred             HHHHHHHHhcCCCccCCEEEEECcCHH--HHHHHHHHHHCCCEEEEEEecCCCccceEEECCC
Confidence            677788888899999999999999999  99999999999987777899 7     9998643

>4dio_A NAD(P) transhydrogenase subunit alpha PART 1; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.60A {Sinorhizobium meliloti}

Probab=93.75  E-value=0.12  Score=57.56  Aligned_cols=46  Identities=15%  Similarity=0.241  Sum_probs=34.5

Q ss_pred             cHHHHHcCCCcCccCceeeEEccccccccCCCCCCCHHHHHHHHhcCCCceEEecCC
Q psy14377        406 SLYTALAGIKPHQCLPITLDVGTNWRRAAAIPQVFTADILKDMAAFNKRPIIFALSN  462 (848)
Q Consensus       406 ~L~~al~g~kP~~~~~~~v~iG~~~~~~S~~~g~FTeevvk~Ma~~~~rPIIFaLSN  462 (848)
                      +|.++++++        ||+|++--......|.+||+|+++.|.   +.++|+-+|-
T Consensus       268 ~l~e~l~~a--------DVVI~tvlipg~~ap~Lvt~emv~~Mk---~GsVIVDvA~  313 (405)
T 4dio_A          268 LVAEHIAKQ--------DIVITTALIPGRPAPRLVTREMLDSMK---PGSVVVDLAV  313 (405)
T ss_dssp             HHHHHHHTC--------SEEEECCCCSSSCCCCCBCHHHHTTSC---TTCEEEETTG
T ss_pred             HHHHHhcCC--------CEEEECCcCCCCCCCEEecHHHHhcCC---CCCEEEEEeC
Confidence            466777777        999987211112357789999999998   7899999995

>3r3j_A Glutamate dehydrogenase; rossman fold, oxidoreductase, apicoplast; 3.10A {Plasmodium falciparum}

Probab=93.74  E-value=0.39  Score=54.35  Aligned_cols=120  Identities=17%  Similarity=0.178  Sum_probs=89.9

Q ss_pred             CCcchhHHHHHHHHHHHHhhCCceeeeeecCCCcc--hHHHHHHHccc---Cc-ee----------ccCCchHHHHHHHH
Q psy14377        630 TGQAYDDFIEEFMQAVVARYGQHVLIQFEDFANHS--AFRFLDTYRNR---YC-VF----------NDDIQGTASVAVAG  693 (848)
Q Consensus       630 ~g~~y~~fvdefv~av~~~fGp~~~IqfEDf~~~n--af~lL~ryr~~---~~-~F----------nDDiQGTaaV~LAg  693 (848)
                      +..+...|-..|+..+.+-+||.+-|-=+|++..-  ---+.++|+..   .+ |+          ..--.-||-=+.-+
T Consensus       146 s~~el~r~~r~f~~eL~~~iGp~~DvpApDvGt~~~em~w~~~~y~~~~~~~~g~vTGKp~~~GGs~~r~~aTg~Gv~~~  225 (456)
T 3r3j_A          146 SENEILKFCQSFMTNLFRYIGPNTDVPAGDIGVGGREIGYLFGQYKKLKNSFEGVLTGKNIKWGGSNIRAEATGYGVVYF  225 (456)
T ss_dssp             CHHHHHHHHHHHHHHHGGGCBTTTEEEECBTTBCHHHHHHHHHHHHHHHTSCCCSCBSCCGGGTCCTTTTTHHHHHHHHH
T ss_pred             CHHHHHHHHHHHHHHHHHhcCCCCCcCCCCCCCCHHHHHHHHHHHHhhcCcccceecCCcccccCCCCCCcccchHHHHH
Confidence            44566777778999998888999999999997632  11245566532   21 11          12223567667777


Q ss_pred             HHHHHhhhCCcCCCceEEecCcchhhHHHHHHHHHHHhccccccccc-CceecCCCCCCch
Q psy14377        694 LLASLRITKTRLSDNTILFQGAGEGTASVAVAGLLASLRITKTRLSD-NTILFQGAGEGTA  753 (848)
Q Consensus       694 llaAlr~t~~~l~d~riv~~GAG~A~~g~giA~ll~~~~~~~~~~~d-~g~i~~~r~~~~~  753 (848)
                      +-.+++..|.+|++.|++|-|.|..  |...|+.|.+.+.+-+.++| +|.||.  +.|.+
T Consensus       226 ~~~~~~~~g~~l~g~~VaVQG~GnV--G~~aa~~L~e~GakvVavsD~~G~iyd--~~Gld  282 (456)
T 3r3j_A          226 AENVLKDLNDNLENKKCLVSGSGNV--AQYLVEKLIEKGAIVLTMSDSNGYILE--PNGFT  282 (456)
T ss_dssp             HHHHHHTTTCCSTTCCEEEECCSHH--HHHHHHHHHHHTCCBCCEECSSCEEEC--TTCCC
T ss_pred             HHHHHHHcCCCccCCEEEEECCCHH--HHHHHHHHHHCCCEEEEEECCCCcEEC--CCCCC
Confidence            7888888899999999999999999  99999999999987777999 999995  45554

>1v9l_A Glutamate dehydrogenase; protein-NAD complex, oxidoreductase; HET: NAD; 2.80A {Pyrobaculum islandicum} SCOP: c.2.1.7 c.58.1.1

Probab=93.32  E-value=0.48  Score=53.03  Aligned_cols=115  Identities=17%  Similarity=0.184  Sum_probs=85.8

Q ss_pred             CcchhHHHHHHHHHHHHhhCCceeeeeecCCCcchHH---HHHHHccc-----CceeccC----------CchHHHHHHH
Q psy14377        631 GQAYDDFIEEFMQAVVARYGQHVLIQFEDFANHSAFR---FLDTYRNR-----YCVFNDD----------IQGTASVAVA  692 (848)
Q Consensus       631 g~~y~~fvdefv~av~~~fGp~~~IqfEDf~~~naf~---lL~ryr~~-----~~~FnDD----------iQGTaaV~LA  692 (848)
                      .+|-..|...|++++.+.-||+..|-=+|++.. ..+   +.+.|+..     ..++..+          -.-||-=+.-
T Consensus       117 ~~e~~r~~r~f~~~l~~~iG~~~dvpA~D~Gt~-~~~m~~~~~~y~~~~~~~~~~~~tGk~~~~GGs~~r~~aTg~Gv~~  195 (421)
T 1v9l_A          117 QRELEELSRGYARAIAPLIGDVVDIPAPDVGTN-AQIMAWMVDEYSKIKGYNVPGVFTSKPPELWGNPVREYATGFGVAV  195 (421)
T ss_dssp             HHHHHHHHHHHHHHHGGGCBTTTEEEECCTTCC-HHHHHHHHHHHHHHHTSCCGGGSCSCCSSSSCCGGGGGHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHhcCCCeEEeCCCCCCC-HHHHHHHHHHHHHHhCCCCCCeEeccchhhCCCCCcccchHHHHHH
Confidence            345577889999999998899999999999873 222   33555331     1222222          1235555555


Q ss_pred             HHHHHHhhhCCcCCCceEEecCcchhhHHHHHHHHHHHhccccccccc-CceecCCC
Q psy14377        693 GLLASLRITKTRLSDNTILFQGAGEGTASVAVAGLLASLRITKTRLSD-NTILFQGA  748 (848)
Q Consensus       693 gllaAlr~t~~~l~d~riv~~GAG~A~~g~giA~ll~~~~~~~~~~~d-~g~i~~~r  748 (848)
                      ++-.+++-.|.+|++.||+|.|.|.-  |...|++|.+.+.+-+.++| +|.+|...
T Consensus       196 ~~~~~~~~~g~~l~gk~vaVqG~GnV--G~~aa~~L~e~GakVVavsD~~G~i~dp~  250 (421)
T 1v9l_A          196 ATREMAKKLWGGIEGKTVAIQGMGNV--GRWTAYWLEKMGAKVIAVSDINGVAYRKE  250 (421)
T ss_dssp             HHHHHHHHHHSCCTTCEEEEECCSHH--HHHHHHHHHTTTCEEEEEECSSCEEECTT
T ss_pred             HHHHHHHhcCCCcCCCEEEEECcCHH--HHHHHHHHHHCCCEEEEEECCCcEEECCC
Confidence            67777888899999999999999999  99999999999877777999 99999644

>3aog_A Glutamate dehydrogenase; NAD(H), oxidoreducta; HET: GLU; 2.10A {Thermus thermophilus HB27} PDB: 3aoe_A

Probab=92.98  E-value=0.35  Score=54.46  Aligned_cols=117  Identities=15%  Similarity=0.130  Sum_probs=90.0

Q ss_pred             CCcchhHHHHHHHHHHHHhhCCceeeeeecCCCcchH---HHHHHHccc-----Ccee----------ccCCchHHHHHH
Q psy14377        630 TGQAYDDFIEEFMQAVVARYGQHVLIQFEDFANHSAF---RFLDTYRNR-----YCVF----------NDDIQGTASVAV  691 (848)
Q Consensus       630 ~g~~y~~fvdefv~av~~~fGp~~~IqfEDf~~~naf---~lL~ryr~~-----~~~F----------nDDiQGTaaV~L  691 (848)
                      +..|-..|...|++++.+--||+.-|-=+|++.. ..   -+.+.|+..     -.++          .+.-.-||-=+.
T Consensus       141 s~~Eler~~r~f~~~l~~~iGp~~dvpA~DvGt~-~~~m~~~~~~y~~~~~~~~~g~vTGkp~~~GGs~~r~~aTg~Gv~  219 (440)
T 3aog_A          141 SPGELERLTRRYTSEIGILLGPDRDIPAPDVNTG-EREMAWMMDTYSMNVGRTVPGVVTGKPIALGGSLGRRDATGRGVF  219 (440)
T ss_dssp             CHHHHHHHHHHHHHHHGGGCBTTTEECCBCTTCC-HHHHHHHHHHHHHHHTSCCGGGSSSCCGGGTCCTTCTTHHHHHHH
T ss_pred             CHHHHHHHHHHHHHHHHHhcCCCcEEECCCCCCC-HHHHHHHHHHHHHhhCCCCCCeEeccchhhCCCCCCCcchHHHHH
Confidence            3455677889999999998899999999999874 32   245666331     1222          233345766666


Q ss_pred             HHHHHHHhhhCCcCCCceEEecCcchhhHHHHHHHHHHHhccccccccc-CceecCCCC
Q psy14377        692 AGLLASLRITKTRLSDNTILFQGAGEGTASVAVAGLLASLRITKTRLSD-NTILFQGAG  749 (848)
Q Consensus       692 AgllaAlr~t~~~l~d~riv~~GAG~A~~g~giA~ll~~~~~~~~~~~d-~g~i~~~r~  749 (848)
                      -++-.+++-.|.+|++.||+|.|.|.-  |...|++|.+.+.+-+.++| +|.+|...+
T Consensus       220 ~~~~~~~~~~g~~l~g~~vaVqGfGnV--G~~~a~~L~e~GakvVavsD~~G~i~dp~G  276 (440)
T 3aog_A          220 ITAAAAAEKIGLQVEGARVAIQGFGNV--GNAAARAFHDHGARVVAVQDHTGTVYNEAG  276 (440)
T ss_dssp             HHHHHHHHHHTCCSTTCEEEEECCSHH--HHHHHHHHHHTTCEEEEEECSSCEEECTTC
T ss_pred             HHHHHHHHhcCCCccCCEEEEeccCHH--HHHHHHHHHHCCCEEEEEEcCCcEEECCCC
Confidence            777788888999999999999999999  99999999999887777999 999886543

>2tmg_A Protein (glutamate dehydrogenase); metabolic role, mutant, oxidoreductase; 2.90A {Thermotoga maritima} SCOP: c.2.1.7 c.58.1.1 PDB: 1b26_A 1b3b_A

Probab=92.86  E-value=0.59  Score=52.23  Aligned_cols=116  Identities=14%  Similarity=0.154  Sum_probs=86.4

Q ss_pred             CcchhHHHHHHHHHHHHhhCCceeeeeecCCCcc--hHHHHHHHcc---c--Cceec----------cCCchHHHHHHHH
Q psy14377        631 GQAYDDFIEEFMQAVVARYGQHVLIQFEDFANHS--AFRFLDTYRN---R--YCVFN----------DDIQGTASVAVAG  693 (848)
Q Consensus       631 g~~y~~fvdefv~av~~~fGp~~~IqfEDf~~~n--af~lL~ryr~---~--~~~Fn----------DDiQGTaaV~LAg  693 (848)
                      .+|-..|...|++++.+.-||..-|-=+|++..-  ---+.+.|+.   .  ..++.          +.-.-||-=+.-+
T Consensus       116 ~~e~~r~~r~f~~~l~~~ig~~~dvpa~D~gt~~~~m~~~~~~y~~~~~~~~~~~~tGk~~~~GGs~~r~~aTg~Gv~~~  195 (415)
T 2tmg_A          116 RRELERLSRRFFREIQVIIGPYNDIPAPDVNTNADVIAWYMDEYEMNVGHTVLGIVTGKPVELGGSKGREEATGRGVKVC  195 (415)
T ss_dssp             HHHHHHHHHHHHHHTGGGCBTTTEECCBCTTCCHHHHHHHHHHHHHHHSSCCCCSCSSCCGGGTCCTTTTTHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHhCCCcEEeCCCCCCCHHHHHHHHHHHHHhhCCCCCCeEecCchhhCCCCCcCcchHHHHHHH
Confidence            3455778889999999988898889999998642  1123455533   1  12232          2223466556667


Q ss_pred             HHHHHhhhCCcCCCceEEecCcchhhHHHHHHHHHHH-hccccccccc-CceecCCC
Q psy14377        694 LLASLRITKTRLSDNTILFQGAGEGTASVAVAGLLAS-LRITKTRLSD-NTILFQGA  748 (848)
Q Consensus       694 llaAlr~t~~~l~d~riv~~GAG~A~~g~giA~ll~~-~~~~~~~~~d-~g~i~~~r  748 (848)
                      +-.+++-.|.++++.||++.|.|.-  |...|++|.+ .+.+-+.++| +|.+|...
T Consensus       196 ~~~~~~~~g~~l~g~~vaVqG~GnV--G~~~a~~L~e~~GakvVavsD~~G~i~dp~  250 (415)
T 2tmg_A          196 AGLAMDVLGIDPKKATVAVQGFGNV--GQFAALLISQELGSKVVAVSDSRGGIYNPE  250 (415)
T ss_dssp             HHHHHHHTTCCTTTCEEEEECCSHH--HHHHHHHHHHTTCCEEEEEECSSCEEECTT
T ss_pred             HHHHHHHcCCCcCCCEEEEECCcHH--HHHHHHHHHHhcCCEEEEEEeCCCeEECCC
Confidence            7778888999999999999999999  9999999998 8877777899 99988653

>3kkj_A Amine oxidase, flavin-containing; oxidoreductase, PSR10, Q888A4, X-RAY, structure, PSI, protein structure initiative; HET: FAD; 2.50A {Pseudomonas syringae PV}

Probab=92.70  E-value=0.11  Score=47.96  Aligned_cols=32  Identities=25%  Similarity=0.367  Sum_probs=27.2

Q ss_pred             ceEEEeccchhHHHHHHHHHHHHHhcCCCccccCCeEEEEcCC
Q psy14377         15 NTILFQGAGEASLGIADLCVMAMQKEGTSEQDARDKIWMVDSK   57 (848)
Q Consensus        15 ~kiV~~GAGaA~ia~a~L~~~am~~~G~~~e~~~~ni~m~Dsk   57 (848)
                      ..|+|+|||.||++||..|.+    .|+       ++.++|+.
T Consensus         3 ~dV~IIGaGpaGL~aA~~La~----~G~-------~V~v~Ek~   34 (336)
T 3kkj_A            3 VPIAIIGTGIAGLSAAQALTA----AGH-------QVHLFDKS   34 (336)
T ss_dssp             CCEEEECCSHHHHHHHHHHHH----TTC-------CEEEECSS
T ss_pred             CCEEEECcCHHHHHHHHHHHH----CCC-------CEEEEECC
Confidence            469999999999999999884    786       57888863

>3jyo_A Quinate/shikimate dehydrogenase; enzyme-cofactor complex, amino-acid biosynthesis, aromatic A biosynthesis, NAD, oxidoreductase; HET: NAD; 1.00A {Corynebacterium glutamicum} PDB: 3jyp_A* 3jyq_A* 2nlo_A

Probab=91.56  E-value=0.32  Score=51.16  Aligned_cols=54  Identities=20%  Similarity=0.229  Sum_probs=43.9

Q ss_pred             hhHHHHHHHHHHHHHhCCcCCCceEEEeccchHHHHHHHHHHHHHHhcCCChhhhcCcEEEEcC
Q psy14377        219 SCVNDVAGLLASLRITKTRLSDNTILFQGAGEASLGIADLCVMAMQKEGTSEQDARDKIWMVDS  282 (848)
Q Consensus       219 A~V~~lAgll~Al~~tg~~l~d~riv~~GAGaAg~gia~ll~~~m~~~G~s~~eA~~~i~~vD~  282 (848)
                      +.=+|..|++.+++-.+..+++.+++|+|||.+|.+++..+..    .|      .++|+++|+
T Consensus       106 G~NTD~~G~~~~l~~~~~~l~~k~vlVlGaGG~g~aia~~L~~----~G------~~~v~i~~R  159 (283)
T 3jyo_A          106 GHNTDVSGFGRGMEEGLPNAKLDSVVQVGAGGVGNAVAYALVT----HG------VQKLQVADL  159 (283)
T ss_dssp             EECHHHHHHHHHHHHHCTTCCCSEEEEECCSHHHHHHHHHHHH----TT------CSEEEEECS
T ss_pred             EecCCHHHHHHHHHHhCcCcCCCEEEEECCcHHHHHHHHHHHH----CC------CCEEEEEEC
Confidence            4556778999999988889999999999999888888776654    47      457888765

>3mw9_A GDH 1, glutamate dehydrogenase 1; allostery, inhibition, oxidoreducta; HET: GLU GTP NAD; 2.40A {Bos taurus} SCOP: c.2.1.7 c.58.1.1 PDB: 3mvo_A* 3mvq_A* 3qmu_A* 3etd_A* 3ete_A* 3etg_A* 1l1f_A 1nr1_A 1nr7_A 1nqt_A 1hwx_A* 1hwy_A* 1hwz_A*

Probab=91.39  E-value=1.4  Score=50.54  Aligned_cols=121  Identities=17%  Similarity=0.260  Sum_probs=85.4

Q ss_pred             CCCcchhHHHHHHHHHHHH--hhCCceeeeeecCCCcch--HHHHHHHcccC---------ceeccC---------CchH
Q psy14377        629 TTGQAYDDFIEEFMQAVVA--RYGQHVLIQFEDFANHSA--FRFLDTYRNRY---------CVFNDD---------IQGT  686 (848)
Q Consensus       629 ~~g~~y~~fvdefv~av~~--~fGp~~~IqfEDf~~~na--f~lL~ryr~~~---------~~FnDD---------iQGT  686 (848)
                      .+..|-..|.-.|+.++.+  -.||...|-=+|++..-.  --+.+.|+...         |+--.-         -.-|
T Consensus       136 ~s~~El~r~~r~f~~eL~~~~~IGp~~dipApDvGt~~~eM~wm~d~y~~~~g~~~~~~~g~vTGKp~~~GGs~~r~eAT  215 (501)
T 3mw9_A          136 YTDNELEKITRRFTMELAKKGFIGPGVDVPAPDMSTGEREMSWIADTYASTIGHYDINAHACVTGKPISQGGIHGRISAT  215 (501)
T ss_dssp             SCHHHHHHHHHHHHHHHHHTTSCBTTTEECCBCTTCCHHHHHHHHHHHHHTTTTTCTTGGGSCSSCCGGGTCCTTTTTHH
T ss_pred             CCHHHHHHHHHHHHHHHhhccCCCCCeeEecCCCCCCHHHHHHHHHHHHHHhCCCcccCCceeeCCcccccCCCCCCCch
Confidence            3556678888999999985  778999999999986421  22677776421         111111         1234


Q ss_pred             HHHHHHHHHH------HHhhhCC--cCCCceEEecCcchhhHHHHHHHHHHHhccccccccc-CceecCCCCCCch
Q psy14377        687 ASVAVAGLLA------SLRITKT--RLSDNTILFQGAGEGTASVAVAGLLASLRITKTRLSD-NTILFQGAGEGTA  753 (848)
Q Consensus       687 aaV~LAglla------Alr~t~~--~l~d~riv~~GAG~A~~g~giA~ll~~~~~~~~~~~d-~g~i~~~r~~~~~  753 (848)
                      |-=+.-++-+      +++..|.  .|++.|++|.|.|..  |...|++|.+.+.+-+.++| +|.||.  +.|.+
T Consensus       216 g~GV~~~~~~~l~~~~~~~~~G~~~~l~g~tVaVQG~GNV--G~~aa~~L~e~GakVVavsDs~G~iyd--~~Gid  287 (501)
T 3mw9_A          216 GRGVFHGIENFINEASYMSILGMTPGFGDKTFVVQGFGNV--GLHSMRYLHRFGAKCITVGESDGSIWN--PDGID  287 (501)
T ss_dssp             HHHHHHHHHHHHTCHHHHHHTTCCSSSTTCEEEEECCSHH--HHHHHHHHHHTTCEEEEEECSSCEEEC--TTCCC
T ss_pred             HHHHHHHHHHHHhhhHHHHHcCCCCCcCCCEEEEECCCHH--HHHHHHHHHHCCCEEEEEEcCCceEEC--CCCCC
Confidence            4444444443      3345675  589999999999999  99999999999988888999 999995  44554

>3t4e_A Quinate/shikimate dehydrogenase; structural genomics, center for structural genomics of infec diseases, csgid; HET: NAD; 1.95A {Salmonella enterica subsp} PDB: 1npd_A* 1o9b_A* 1vi2_A*

Probab=90.98  E-value=0.38  Score=51.61  Aligned_cols=54  Identities=20%  Similarity=0.358  Sum_probs=44.2

Q ss_pred             hhHHHHHHHHHHHHHhCCcCCCceEEEeccchHHHHHHHHHHHHHHhcCCChhhhcCcEEEEcC
Q psy14377        219 SCVNDVAGLLASLRITKTRLSDNTILFQGAGEASLGIADLCVMAMQKEGTSEQDARDKIWMVDS  282 (848)
Q Consensus       219 A~V~~lAgll~Al~~tg~~l~d~riv~~GAGaAg~gia~ll~~~m~~~G~s~~eA~~~i~~vD~  282 (848)
                      +.=+|..|++.+|+-.+.++++.+++|+|||.+|.+++..|..    .|      .++|+++++
T Consensus       127 G~NTD~~Gf~~~L~~~~~~l~gk~~lVlGAGGaaraia~~L~~----~G------~~~v~v~nR  180 (312)
T 3t4e_A          127 GYNTDGTGHIRAIKESGFDMRGKTMVLLGAGGAATAIGAQAAI----EG------IKEIKLFNR  180 (312)
T ss_dssp             EECHHHHHHHHHHHHTTCCCTTCEEEEECCSHHHHHHHHHHHH----TT------CSEEEEEEC
T ss_pred             EeCCcHHHHHHHHHhcCCCcCCCEEEEECcCHHHHHHHHHHHH----cC------CCEEEEEEC
Confidence            4456678999999888999999999999999888888877665    48      467888766

>3tnl_A Shikimate dehydrogenase; structural genomics, center for structural genomics of infec diseases, csgid; HET: NAD SKM; 1.45A {Listeria monocytogenes} PDB: 3toz_A*

Probab=90.88  E-value=0.37  Score=51.72  Aligned_cols=53  Identities=21%  Similarity=0.364  Sum_probs=43.2

Q ss_pred             HHHHHHHHHHHHHhCCcCCCceEEEeccchHHHHHHHHHHHHHHhcCCChhhhcCcEEEEcCC
Q psy14377        221 VNDVAGLLASLRITKTRLSDNTILFQGAGEASLGIADLCVMAMQKEGTSEQDARDKIWMVDSK  283 (848)
Q Consensus       221 V~~lAgll~Al~~tg~~l~d~riv~~GAGaAg~gia~ll~~~m~~~G~s~~eA~~~i~~vD~k  283 (848)
                      =+|..|++.+|+-.+.++++.+++|+|||.+|.+++..+..    .|      .++|+++++.
T Consensus       135 NTD~~Gf~~~L~~~~~~l~gk~~lVlGaGG~g~aia~~L~~----~G------a~~V~i~nR~  187 (315)
T 3tnl_A          135 ITDGTGYMRALKEAGHDIIGKKMTICGAGGAATAICIQAAL----DG------VKEISIFNRK  187 (315)
T ss_dssp             CCHHHHHHHHHHHTTCCCTTSEEEEECCSHHHHHHHHHHHH----TT------CSEEEEEECS
T ss_pred             CCCHHHHHHHHHHcCCCccCCEEEEECCChHHHHHHHHHHH----CC------CCEEEEEECC
Confidence            35677899999888999999999999999888888876654    48      4688887763

>3pwz_A Shikimate dehydrogenase 3; alpha-beta, oxidoreductase; 1.71A {Pseudomonas putida}

Probab=90.88  E-value=0.34  Score=50.83  Aligned_cols=54  Identities=22%  Similarity=0.233  Sum_probs=42.9

Q ss_pred             hhHHHHHHHHHH-HHHhCCcCCCceEEEeccchHHHHHHHHHHHHHHhcCCChhhhcCcEEEEcC
Q psy14377        219 SCVNDVAGLLAS-LRITKTRLSDNTILFQGAGEASLGIADLCVMAMQKEGTSEQDARDKIWMVDS  282 (848)
Q Consensus       219 A~V~~lAgll~A-l~~tg~~l~d~riv~~GAGaAg~gia~ll~~~m~~~G~s~~eA~~~i~~vD~  282 (848)
                      +.=+|..|++.+ ++-.+.++++.+++|+|||.+|.+++..|.+    .|      .++|+++++
T Consensus        98 G~NTD~~G~~~~lL~~~~~~l~~k~~lvlGaGg~~~aia~~L~~----~G------~~~v~i~~R  152 (272)
T 3pwz_A           98 AENFDGIGLLRDIEENLGEPLRNRRVLLLGAGGAVRGALLPFLQ----AG------PSELVIANR  152 (272)
T ss_dssp             EECCHHHHHHHHHHTTSCCCCTTSEEEEECCSHHHHHHHHHHHH----TC------CSEEEEECS
T ss_pred             EecCCHHHHHHHHHHHcCCCccCCEEEEECccHHHHHHHHHHHH----cC------CCEEEEEeC
Confidence            344567799999 8888889999999999999888888876665    47      457888765

>3o8q_A Shikimate 5-dehydrogenase I alpha; structural genomics, center for structural genomics of infec diseases, csgid; HET: EPE; 1.45A {Vibrio cholerae biovar el tor} PDB: 3sef_A* 3pgj_A* 3o8q_B*

Probab=90.85  E-value=0.34  Score=51.05  Aligned_cols=53  Identities=26%  Similarity=0.302  Sum_probs=42.6

Q ss_pred             hHHHHHHHHHHHHHhCCcCCCceEEEeccchHHHHHHHHHHHHHHhcCCChhhhcCcEEEEcC
Q psy14377        220 CVNDVAGLLASLRITKTRLSDNTILFQGAGEASLGIADLCVMAMQKEGTSEQDARDKIWMVDS  282 (848)
Q Consensus       220 ~V~~lAgll~Al~~tg~~l~d~riv~~GAGaAg~gia~ll~~~m~~~G~s~~eA~~~i~~vD~  282 (848)
                      .=+|..|++.+|+-.+.++++.+++|+|||.+|.+++..|..    .|      .++|+++++
T Consensus       106 ~NTD~~G~~~~L~~~~~~l~~k~vlvlGaGg~g~aia~~L~~----~G------~~~v~v~~R  158 (281)
T 3o8q_A          106 DNTDGEGLVQDLLAQQVLLKGATILLIGAGGAARGVLKPLLD----QQ------PASITVTNR  158 (281)
T ss_dssp             ECCHHHHHHHHHHHTTCCCTTCEEEEECCSHHHHHHHHHHHT----TC------CSEEEEEES
T ss_pred             EecHHHHHHHHHHHhCCCccCCEEEEECchHHHHHHHHHHHh----cC------CCeEEEEEC
Confidence            344577899999888999999999999999888888776654    47      457888766

>3fbt_A Chorismate mutase and shikimate 5-dehydrogenase fusion protein; structural genomics, oxidoreductase, amino-acid biosynthesis; 2.10A {Clostridium acetobutylicum}

Probab=90.77  E-value=0.32  Score=51.42  Aligned_cols=53  Identities=17%  Similarity=0.214  Sum_probs=43.6

Q ss_pred             hHHHHHHHHHHHHHhCCcCCCceEEEeccchHHHHHHHHHHHHHHhcCCChhhhcCcEEEEcC
Q psy14377        220 CVNDVAGLLASLRITKTRLSDNTILFQGAGEASLGIADLCVMAMQKEGTSEQDARDKIWMVDS  282 (848)
Q Consensus       220 ~V~~lAgll~Al~~tg~~l~d~riv~~GAGaAg~gia~ll~~~m~~~G~s~~eA~~~i~~vD~  282 (848)
                      .=+|..|++.+|+-.+.++++.+++|+|||.+|.+++..|..    .|      .++|+++++
T Consensus       102 ~NTD~~G~~~~L~~~~~~~~~k~vlvlGaGGaaraia~~L~~----~G------~~~v~v~nR  154 (282)
T 3fbt_A          102 FNTDYIGFGKMLSKFRVEIKNNICVVLGSGGAARAVLQYLKD----NF------AKDIYVVTR  154 (282)
T ss_dssp             ECCHHHHHHHHHHHTTCCCTTSEEEEECSSTTHHHHHHHHHH----TT------CSEEEEEES
T ss_pred             eCCcHHHHHHHHHHcCCCccCCEEEEECCcHHHHHHHHHHHH----cC------CCEEEEEeC
Confidence            335677999999988999999999999999998888887665    47      457888766

>3don_A Shikimate dehydrogenase; alpha-beta structure, rossman fold, amino-acid biosynthesis, amino acid biosynthesis, NADP, oxidoreductase; 2.10A {Staphylococcus epidermidis} PDB: 3doo_A*

Probab=90.60  E-value=0.26  Score=51.89  Aligned_cols=54  Identities=28%  Similarity=0.296  Sum_probs=43.8

Q ss_pred             hHHHHHHHHHHHHHhCCcCCCceEEEeccchHHHHHHHHHHHHHHhcCCChhhhcCcEEEEcCC
Q psy14377        220 CVNDVAGLLASLRITKTRLSDNTILFQGAGEASLGIADLCVMAMQKEGTSEQDARDKIWMVDSK  283 (848)
Q Consensus       220 ~V~~lAgll~Al~~tg~~l~d~riv~~GAGaAg~gia~ll~~~m~~~G~s~~eA~~~i~~vD~k  283 (848)
                      .=+|..|++.+++-.+.++++.+++|+|||.+|.+++..|..    .|      .++|+++++.
T Consensus        97 ~NTD~~G~~~~L~~~~~~l~~k~vlvlGaGg~g~aia~~L~~----~G------~~~v~v~~R~  150 (277)
T 3don_A           97 YNTDGIGYVNGLKQIYEGIEDAYILILGAGGASKGIANELYK----IV------RPTLTVANRT  150 (277)
T ss_dssp             ECCHHHHHHHHHHHHSTTGGGCCEEEECCSHHHHHHHHHHHT----TC------CSCCEEECSC
T ss_pred             ECChHHHHHHHHHHhCCCcCCCEEEEECCcHHHHHHHHHHHH----CC------CCEEEEEeCC
Confidence            345677899999989999999999999999888888877654    47      4578887764

>3n58_A Adenosylhomocysteinase; ssgcid, hydrolase, structural genomics, seattle structural G center for infectious disease; HET: ADN NAD; 2.39A {Brucella melitensis biovar abortus}

Probab=90.47  E-value=0.24  Score=56.14  Aligned_cols=92  Identities=17%  Similarity=0.226  Sum_probs=64.2

Q ss_pred             cCcee----------ccCCchHHHHHHHHHHHHHhhhCCcCCCceEEecCcchhhHHHHHHHHHHHhccccccccc-Cce
Q psy14377        675 RYCVF----------NDDIQGTASVAVAGLLASLRITKTRLSDNTILFQGAGEGTASVAVAGLLASLRITKTRLSD-NTI  743 (848)
Q Consensus       675 ~~~~F----------nDDiQGTaaV~LAgllaAlr~t~~~l~d~riv~~GAG~A~~g~giA~ll~~~~~~~~~~~d-~g~  743 (848)
                      .+|+|          .|...||+-.++.|+.   |.++..|.+.+++|+|.|.-  |.++|+.+...++ ++.++| +..
T Consensus       208 ~~PvinVnds~tK~~fDn~yG~~eslvdgI~---Ratg~~L~GKTVgVIG~G~I--Gr~vA~~lrafGa-~Viv~d~dp~  281 (464)
T 3n58_A          208 PFPAINVNDSVTKSKFDNKYGCKESLVDGIR---RGTDVMMAGKVAVVCGYGDV--GKGSAQSLAGAGA-RVKVTEVDPI  281 (464)
T ss_dssp             CSCEEECTTSHHHHTTHHHHHHHHHHHHHHH---HHHCCCCTTCEEEEECCSHH--HHHHHHHHHHTTC-EEEEECSSHH
T ss_pred             CCCEEeeccHhhhhhhhhhhcchHHHHHHHH---HhcCCcccCCEEEEECcCHH--HHHHHHHHHHCCC-EEEEEeCCcc
Confidence            48999          6788999999888875   56789999999999999999  9999999988875 444444 221


Q ss_pred             ecCCCCCCchHHHhhhccccchhhccccCCCceEEeec
Q psy14377        744 LFQGAGEGTASVAIAGLLASLRITKTRLSDNTILFQGS  781 (848)
Q Consensus       744 i~~~r~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~s  781 (848)
                             .-.+....|...  -.+++.+..+||++..+
T Consensus       282 -------~a~~A~~~G~~v--v~LeElL~~ADIVv~at  310 (464)
T 3n58_A          282 -------CALQAAMDGFEV--VTLDDAASTADIVVTTT  310 (464)
T ss_dssp             -------HHHHHHHTTCEE--CCHHHHGGGCSEEEECC
T ss_pred             -------hhhHHHhcCcee--ccHHHHHhhCCEEEECC
Confidence                   000111123211  13566777788877654

>1bgv_A Glutamate dehydrogenase; oxidoreductase; HET: GLU; 1.90A {Clostridium symbiosum} SCOP: c.2.1.7 c.58.1.1 PDB: 1hrd_A 1k89_A 1aup_A 2yfh_A

Probab=90.28  E-value=1.3  Score=50.13  Aligned_cols=115  Identities=18%  Similarity=0.217  Sum_probs=85.1

Q ss_pred             cchhHHHHHHHHHHHHhhCCceeeeeecCCCcch--HHHHHHHcc---c--Cceecc----------CCchHHHHHHHHH
Q psy14377        632 QAYDDFIEEFMQAVVARYGQHVLIQFEDFANHSA--FRFLDTYRN---R--YCVFND----------DIQGTASVAVAGL  694 (848)
Q Consensus       632 ~~y~~fvdefv~av~~~fGp~~~IqfEDf~~~na--f~lL~ryr~---~--~~~FnD----------DiQGTaaV~LAgl  694 (848)
                      .+-..|-..|+.++.+-.||..-|-=+|++..-.  --+.++|++   .  .-++-.          .-.-||-=+.-++
T Consensus       138 ~e~~r~~r~f~~~L~~~ig~~~dvpA~DvGt~~~~m~~~~~~y~~~~~~~~~g~~tGk~~~~GGs~~r~~aTg~Gv~~~~  217 (449)
T 1bgv_A          138 REVMRFCQAFMTELYRHIGPDIDVPAGDLGVGAREIGYMYGQYRKIVGGFYNGVLTGKARSFGGSLVRPEATGYGSVYYV  217 (449)
T ss_dssp             HHHHHHHHHHHHHHGGGCBTTTEEEECBTTBCHHHHHHHHHHHHHHHTSCCGGGSSSCCGGGTCCTTTTTHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhhheeCCCCcCCCCCCCCCHHHHHHHHHHHHHhcCCCcCceEecCCcccCCCCCcccchhHHHHHHH
Confidence            4556777778989988889999999999986521  113344443   1  122211          2234665566677


Q ss_pred             HHHHhhhCCcCCCceEEecCcchhhHHHHHHHHHHHhccccccccc-CceecCCC
Q psy14377        695 LASLRITKTRLSDNTILFQGAGEGTASVAVAGLLASLRITKTRLSD-NTILFQGA  748 (848)
Q Consensus       695 laAlr~t~~~l~d~riv~~GAG~A~~g~giA~ll~~~~~~~~~~~d-~g~i~~~r  748 (848)
                      -.+++-.|.+|++.||+|.|.|..  |...|++|.+.+.+-+.++| +|.+|...
T Consensus       218 ~~~~~~~G~~l~g~~v~VqG~GnV--G~~~a~~L~~~GakvVavsD~~G~i~dp~  270 (449)
T 1bgv_A          218 EAVMKHENDTLVGKTVALAGFGNV--AWGAAKKLAELGAKAVTLSGPDGYIYDPE  270 (449)
T ss_dssp             HHHHHHTTCCSTTCEEEECCSSHH--HHHHHHHHHHHTCEEEEEEETTEEEECTT
T ss_pred             HHHHHHccCCcCCCEEEEECCCHH--HHHHHHHHHHCCCEEEEEEeCCceEECCC
Confidence            778888899999999999999999  99999999999987778899 99999643

>3ond_A Adenosylhomocysteinase; plant protein, enzyme-substrate complex, NAD cofactor, regul SAM-dependent methylation reactions; HET: NAD ADN; 1.17A {Lupinus luteus} PDB: 3one_A* 3onf_A*

Probab=89.62  E-value=0.5  Score=53.85  Aligned_cols=59  Identities=24%  Similarity=0.362  Sum_probs=48.7

Q ss_pred             CCCCeE-------------EEchhhHHHHHHHHHHHHHhCCcCCCceEEEeccchHHHHHHHHHHHHHHhcCCChhhhcC
Q psy14377        209 TVKPSI-------------LIGESCVNDVAGLLASLRITKTRLSDNTILFQGAGEASLGIADLCVMAMQKEGTSEQDARD  275 (848)
Q Consensus       209 ~~iPvF-------------qhGTA~V~~lAgll~Al~~tg~~l~d~riv~~GAGaAg~gia~ll~~~m~~~G~s~~eA~~  275 (848)
                      .++|+|             +|||.-.. +.+++   |.++..|++.+++|.|+|..|.++|..+...    |.       
T Consensus       225 L~iPvinvnDs~tK~~fDn~yGt~~sl-~dgi~---r~tg~~L~GKtVvVtGaGgIG~aiA~~Laa~----GA-------  289 (488)
T 3ond_A          225 LLFPAINVNDSVTKSKFDNLYGCRHSL-PDGLM---RATDVMIAGKVAVVAGYGDVGKGCAAALKQA----GA-------  289 (488)
T ss_dssp             CCSCEEECTTSHHHHTTHHHHHHHHHH-HHHHH---HHHCCCCTTCEEEEECCSHHHHHHHHHHHHT----TC-------
T ss_pred             CCCceecccchhhhhHhhhhccccHHH-HHHHH---HHcCCcccCCEEEEECCCHHHHHHHHHHHHC----CC-------
Confidence            358888             67998887 88887   6799999999999999999999998877654    72       


Q ss_pred             cEEEEcC
Q psy14377        276 KIWMVDS  282 (848)
Q Consensus       276 ~i~~vD~  282 (848)
                      +++++|+
T Consensus       290 ~Viv~D~  296 (488)
T 3ond_A          290 RVIVTEI  296 (488)
T ss_dssp             EEEEECS
T ss_pred             EEEEEcC
Confidence            6888766

>3don_A Shikimate dehydrogenase; alpha-beta structure, rossman fold, amino-acid biosynthesis, amino acid biosynthesis, NADP, oxidoreductase; 2.10A {Staphylococcus epidermidis} PDB: 3doo_A*

Probab=89.00  E-value=0.3  Score=51.48  Aligned_cols=94  Identities=19%  Similarity=0.261  Sum_probs=60.4

Q ss_pred             cCceeccCCchHHHHHHHHHHHHHhhhCCcCCCceEEecCcchhhHHHHHHHHHHHhcccccccccCceecCCCCCCchH
Q psy14377        675 RYCVFNDDIQGTASVAVAGLLASLRITKTRLSDNTILFQGAGEGTASVAVAGLLASLRITKTRLSDNTILFQGAGEGTAS  754 (848)
Q Consensus       675 ~~~~FnDDiQGTaaV~LAgllaAlr~t~~~l~d~riv~~GAG~A~~g~giA~ll~~~~~~~~~~~d~g~i~~~r~~~~~~  754 (848)
                      ++.-+|-|        -.|++.+++-.+.++++.+++|+|||.+  |-+++..|...+++++.+.+...   .+.+... 
T Consensus        93 ~l~G~NTD--------~~G~~~~L~~~~~~l~~k~vlvlGaGg~--g~aia~~L~~~G~~~v~v~~R~~---~~a~~la-  158 (277)
T 3don_A           93 KWIGYNTD--------GIGYVNGLKQIYEGIEDAYILILGAGGA--SKGIANELYKIVRPTLTVANRTM---SRFNNWS-  158 (277)
T ss_dssp             EEEEECCH--------HHHHHHHHHHHSTTGGGCCEEEECCSHH--HHHHHHHHHTTCCSCCEEECSCG---GGGTTCC-
T ss_pred             EEEEECCh--------HHHHHHHHHHhCCCcCCCEEEEECCcHH--HHHHHHHHHHCCCCEEEEEeCCH---HHHHHHH-
Confidence            46667877        3456677777788899999999999999  99999999999887776555110   0001000 


Q ss_pred             HHhhhccccchhhccccCCCceEEeecCCC
Q psy14377        755 VAIAGLLASLRITKTRLSDNTILFQGSGEG  784 (848)
Q Consensus       755 ~~~~~~~~~~r~~~~~~~~~~~~~~~s~~~  784 (848)
                        ...-....-.+++.+.++||.+....-|
T Consensus       159 --~~~~~~~~~~~~~~~~~aDiVInaTp~G  186 (277)
T 3don_A          159 --LNINKINLSHAESHLDEFDIIINTTPAG  186 (277)
T ss_dssp             --SCCEEECHHHHHHTGGGCSEEEECCC--
T ss_pred             --HhcccccHhhHHHHhcCCCEEEECccCC
Confidence              0000011123455678999999766555

>2egg_A AROE, shikimate 5-dehydrogenase; dimer, X-RAY diffraction, structural genomics, NPPSFA; 2.25A {Geobacillus kaustophilus}

Probab=88.70  E-value=0.63  Score=48.99  Aligned_cols=50  Identities=26%  Similarity=0.306  Sum_probs=40.5

Q ss_pred             HHHHHHHHHHHhC-CcCCCceEEEeccchHHHHHHHHHHHHHHhcCCChhhhcCcEEEEcC
Q psy14377        223 DVAGLLASLRITK-TRLSDNTILFQGAGEASLGIADLCVMAMQKEGTSEQDARDKIWMVDS  282 (848)
Q Consensus       223 ~lAgll~Al~~tg-~~l~d~riv~~GAGaAg~gia~ll~~~m~~~G~s~~eA~~~i~~vD~  282 (848)
                      |..|++.+++-.+ ..++..+++|+|||.+|.+++..|..    .|      .++|+++|+
T Consensus       123 d~~G~~~~l~~~~~~~l~~~~vlVlGaGg~g~aia~~L~~----~G------~~~V~v~nR  173 (297)
T 2egg_A          123 DGLGYVQALEEEMNITLDGKRILVIGAGGGARGIYFSLLS----TA------AERIDMANR  173 (297)
T ss_dssp             HHHHHHHHHHHHTTCCCTTCEEEEECCSHHHHHHHHHHHT----TT------CSEEEEECS
T ss_pred             CHHHHHHHHHHhCCCCCCCCEEEEECcHHHHHHHHHHHHH----CC------CCEEEEEeC
Confidence            4678889998777 78999999999999998888887654    47      457888776

>2hk9_A Shikimate dehydrogenase; shikimate pathway, drug design, oxidoreductase; HET: ATR SKM NAP; 2.20A {Aquifex aeolicus} PDB: 2hk8_A 2hk7_A

Probab=88.17  E-value=0.85  Score=47.16  Aligned_cols=50  Identities=30%  Similarity=0.440  Sum_probs=41.5

Q ss_pred             HHHHHHHHHHHhCCcCCCceEEEeccchHHHHHHHHHHHHHHhcCCChhhhcCcEEEEcCC
Q psy14377        223 DVAGLLASLRITKTRLSDNTILFQGAGEASLGIADLCVMAMQKEGTSEQDARDKIWMVDSK  283 (848)
Q Consensus       223 ~lAgll~Al~~tg~~l~d~riv~~GAGaAg~gia~ll~~~m~~~G~s~~eA~~~i~~vD~k  283 (848)
                      +..|++.+++-.+..++..+++|+|+|.+|.++|..+...    |      . +++++|+.
T Consensus       112 d~~G~~~~l~~~~~~~~~~~v~iiGaG~~g~aia~~L~~~----g------~-~V~v~~r~  161 (275)
T 2hk9_A          112 DWIGFLKSLKSLIPEVKEKSILVLGAGGASRAVIYALVKE----G------A-KVFLWNRT  161 (275)
T ss_dssp             HHHHHHHHHHHHCTTGGGSEEEEECCSHHHHHHHHHHHHH----T------C-EEEEECSS
T ss_pred             CHHHHHHHHHHhCCCcCCCEEEEECchHHHHHHHHHHHHc----C------C-EEEEEECC
Confidence            4568888988888889999999999999999999887764    6      3 68887763

>3k92_A NAD-GDH, NAD-specific glutamate dehydrogenase; ROCG, oxidoreductase; 2.30A {Bacillus subtilis} PDB: 3k8z_A

Probab=87.30  E-value=1  Score=50.43  Aligned_cols=62  Identities=19%  Similarity=0.214  Sum_probs=51.2

Q ss_pred             hhhHHHHHHHHHHHHHhCCcCCCceEEEeccchHHHHHHHHHHHHHHhcCCChhhhcCcEEEEcCCCcccCCC
Q psy14377        218 ESCVNDVAGLLASLRITKTRLSDNTILFQGAGEASLGIADLCVMAMQKEGTSEQDARDKIWMVDSKGLIVKDR  290 (848)
Q Consensus       218 TA~V~~lAgll~Al~~tg~~l~d~riv~~GAGaAg~gia~ll~~~m~~~G~s~~eA~~~i~~vD~kGLi~~~r  290 (848)
                      |+.=+ .-++-.+++..|.+|++.|++|+|.|..|...|+++.+.    |      .+-+.+.|++|-++...
T Consensus       200 Tg~Gv-~~~~~~~~~~~g~~l~g~~vaVqG~GnVG~~aa~~l~e~----G------akVVavsD~~G~iyd~~  261 (424)
T 3k92_A          200 TAQGV-TICIEEAVKKKGIKLQNARIIIQGFGNAGSFLAKFMHDA----G------AKVIGISDANGGLYNPD  261 (424)
T ss_dssp             HHHHH-HHHHHHHHHHTTCCGGGCEEEEECCSHHHHHHHHHHHHH----T------CEEEEEECSSCEEECTT
T ss_pred             HHHHH-HHHHHHHHHHcCCCcccCEEEEECCCHHHHHHHHHHHHC----C------CEEEEEECCCCcEECCC
Confidence            44444 557788888899999999999999999999999998765    7      45567999999999643

>1nyt_A Shikimate 5-dehydrogenase; alpha/beta domains, WIDE cleft separation, oxidoreductase; HET: NAP; 1.50A {Escherichia coli} SCOP: c.2.1.7 c.58.1.5

Probab=87.01  E-value=1.1  Score=46.22  Aligned_cols=50  Identities=26%  Similarity=0.237  Sum_probs=40.1

Q ss_pred             HHHHHHHHHHHHhCCcCCCceEEEeccchHHHHHHHHHHHHHHhcCCChhhhcCcEEEEcC
Q psy14377        222 NDVAGLLASLRITKTRLSDNTILFQGAGEASLGIADLCVMAMQKEGTSEQDARDKIWMVDS  282 (848)
Q Consensus       222 ~~lAgll~Al~~tg~~l~d~riv~~GAGaAg~gia~ll~~~m~~~G~s~~eA~~~i~~vD~  282 (848)
                      +|..|++.+|+-.+.+++..+++|+|||.+|.++|..+...    |       .+++++|+
T Consensus       101 tD~~G~~~~L~~~~~~l~~k~vlViGaGg~g~a~a~~L~~~----G-------~~V~v~~R  150 (271)
T 1nyt_A          101 TDGVGLLSDLERLSFIRPGLRILLIGAGGASRGVLLPLLSL----D-------CAVTITNR  150 (271)
T ss_dssp             CHHHHHHHHHHHHTCCCTTCEEEEECCSHHHHHHHHHHHHT----T-------CEEEEECS
T ss_pred             CCHHHHHHHHHhcCcCcCCCEEEEECCcHHHHHHHHHHHHc----C-------CEEEEEEC
Confidence            34678899998888899999999999998888888876653    6       25777665

>2jae_A L-amino acid oxidase; oxidoreductase, dimerisation mode, hydride transfer mechanism, GR2-family, flavoenzyme, FAD containing; HET: FAD; 1.25A {Rhodococcus opacus} PDB: 2jb1_A* 2jb2_A* 2jb3_A*

Probab=86.08  E-value=0.87  Score=49.65  Aligned_cols=44  Identities=16%  Similarity=0.157  Sum_probs=35.5

Q ss_pred             ccccCCCCCCceEEEeccchhHHHHHHHHHHHHHhcCCCccccCCeEEEEcCCCc
Q psy14377          5 LRITKTRLSDNTILFQGAGEASLGIADLCVMAMQKEGTSEQDARDKIWMVDSKGL   59 (848)
Q Consensus         5 l~i~gK~i~d~kiV~~GAGaA~ia~a~L~~~am~~~G~~~e~~~~ni~m~DskGv   59 (848)
                      -++.++--+..+|+|+|||.||+++|..|..    .|.       ++.++++..-
T Consensus         2 ~~~~~~~~~~~~v~IIGaG~aGl~aA~~L~~----~g~-------~v~v~E~~~~   45 (489)
T 2jae_A            2 GDLIGKVKGSHSVVVLGGGPAGLCSAFELQK----AGY-------KVTVLEARTR   45 (489)
T ss_dssp             -CCCCCCCSCCEEEEECCSHHHHHHHHHHHH----TTC-------EEEEECSSSS
T ss_pred             cchhhcccCCCCEEEECCCHHHHHHHHHHHH----CCC-------CEEEEeccCC
Confidence            4667777778899999999999999998874    663       7888887654

>1p77_A Shikimate 5-dehydrogenase; NADPH, oxidoreductase; HET: ATR; 1.95A {Haemophilus influenzae} SCOP: c.2.1.7 c.58.1.5 PDB: 1p74_A*

Probab=86.04  E-value=0.93  Score=46.83  Aligned_cols=49  Identities=24%  Similarity=0.313  Sum_probs=40.2

Q ss_pred             HHHHHHHHHHHhCCcCCCceEEEeccchHHHHHHHHHHHHHHhcCCChhhhcCcEEEEcC
Q psy14377        223 DVAGLLASLRITKTRLSDNTILFQGAGEASLGIADLCVMAMQKEGTSEQDARDKIWMVDS  282 (848)
Q Consensus       223 ~lAgll~Al~~tg~~l~d~riv~~GAGaAg~gia~ll~~~m~~~G~s~~eA~~~i~~vD~  282 (848)
                      |..|++.+|+-.+..++..+++|+|||.+|.+++..+...    |       .+++++|+
T Consensus       102 D~~G~~~~L~~~~~~~~~~~vlvlGaGg~g~a~a~~L~~~----G-------~~v~v~~R  150 (272)
T 1p77_A          102 DGIGLVTDLQRLNWLRPNQHVLILGAGGATKGVLLPLLQA----Q-------QNIVLANR  150 (272)
T ss_dssp             HHHHHHHHHHHTTCCCTTCEEEEECCSHHHHTTHHHHHHT----T-------CEEEEEES
T ss_pred             CHHHHHHHHHHhCCCcCCCEEEEECCcHHHHHHHHHHHHC----C-------CEEEEEEC
Confidence            4668999998888889999999999999999988876653    6       36777765

>2d5c_A AROE, shikimate 5-dehydrogenase; substrate, dimer, structural genomics, NPPSFA, Na project on protein structural and functional analyses; HET: SKM; 1.65A {Thermus thermophilus} PDB: 1wxd_A* 2cy0_A* 2ev9_A*

Probab=85.94  E-value=1.2  Score=45.29  Aligned_cols=47  Identities=28%  Similarity=0.418  Sum_probs=38.6

Q ss_pred             HHHHHHHHHHhCCcCCCceEEEeccchHHHHHHHHHHHHHHhcCCChhhhcCcEEEEcC
Q psy14377        224 VAGLLASLRITKTRLSDNTILFQGAGEASLGIADLCVMAMQKEGTSEQDARDKIWMVDS  282 (848)
Q Consensus       224 lAgll~Al~~tg~~l~d~riv~~GAGaAg~gia~ll~~~m~~~G~s~~eA~~~i~~vD~  282 (848)
                      ..|++.+++-.+.++++ +++|+|+|.+|.++|..+...    |      . +++++|+
T Consensus       101 ~~g~~~~l~~~~~~l~~-~v~iiG~G~~g~~~a~~l~~~----g------~-~v~v~~r  147 (263)
T 2d5c_A          101 APGFLEALKAGGIPLKG-PALVLGAGGAGRAVAFALREA----G------L-EVWVWNR  147 (263)
T ss_dssp             HHHHHHHHHHTTCCCCS-CEEEECCSHHHHHHHHHHHHT----T------C-CEEEECS
T ss_pred             HHHHHHHHHHhCCCCCC-eEEEECCcHHHHHHHHHHHHC----C------C-EEEEEEC
Confidence            45888888888889999 999999999999999876643    6      2 5787775

>3d4o_A Dipicolinate synthase subunit A; NP_243269.1, structural GEN joint center for structural genomics, JCSG, protein structu initiative, PSI-2; HET: MSE TAR; 2.10A {Bacillus halodurans}

Probab=85.81  E-value=1.2  Score=46.46  Aligned_cols=110  Identities=14%  Similarity=0.155  Sum_probs=67.9

Q ss_pred             hHHHHHHHcc-cCceeccC------CchHHHHHHHHHHHHHhhhCCcCCCceEEecCcchhhHHHHHHHHHHHhcccccc
Q psy14377        665 AFRFLDTYRN-RYCVFNDD------IQGTASVAVAGLLASLRITKTRLSDNTILFQGAGEGTASVAVAGLLASLRITKTR  737 (848)
Q Consensus       665 af~lL~ryr~-~~~~FnDD------iQGTaaV~LAgllaAlr~t~~~l~d~riv~~GAG~A~~g~giA~ll~~~~~~~~~  737 (848)
                      -..+.+..++ .+.++|=.      .-.+-+|+=.++..++...+..+.+.+++|+|+|..  |..+|+.+...+. ++.
T Consensus       106 ~id~~~~~~~~gi~v~~~~~~~~~~~~~~~svae~a~~~~l~~~~~~l~g~~v~IiG~G~i--G~~~a~~l~~~G~-~V~  182 (293)
T 3d4o_A          106 NTYLNQCMKKTNRTLVKLMERDDIAIYNSIPTAEGTIMMAIQHTDFTIHGANVAVLGLGRV--GMSVARKFAALGA-KVK  182 (293)
T ss_dssp             CHHHHHHHHHHTCEEEEGGGCHHHHHHHHHHHHHHHHHHHHHHCSSCSTTCEEEEECCSHH--HHHHHHHHHHTTC-EEE
T ss_pred             CHHHHHHHHHcCCeEEEecCCceeeeeccHhHHHHHHHHHHHhcCCCCCCCEEEEEeeCHH--HHHHHHHHHhCCC-EEE
Confidence            3444344444 37777743      234555555566666677788999999999999999  9999999988775 444


Q ss_pred             cccCceecCCCCCCchHHHhhhcc-ccchhhccccCCCceEEeecCC
Q psy14377        738 LSDNTILFQGAGEGTASVAIAGLL-ASLRITKTRLSDNTILFQGSGE  783 (848)
Q Consensus       738 ~~d~g~i~~~r~~~~~~~~~~~~~-~~~r~~~~~~~~~~~~~~~s~~  783 (848)
                      ..|.-      ++........|.. .+...+++.+.++|+.+-...-
T Consensus       183 ~~dr~------~~~~~~~~~~g~~~~~~~~l~~~l~~aDvVi~~~p~  223 (293)
T 3d4o_A          183 VGARE------SDLLARIAEMGMEPFHISKAAQELRDVDVCINTIPA  223 (293)
T ss_dssp             EEESS------HHHHHHHHHTTSEEEEGGGHHHHTTTCSEEEECCSS
T ss_pred             EEECC------HHHHHHHHHCCCeecChhhHHHHhcCCCEEEECCCh
Confidence            44411      1101111222321 1223466778899998876644

>3p2o_A Bifunctional protein fold; structural genomics, center for structural genomics of infec diseases, csgid, alpha-beta-alpha sandwich; HET: NAD; 2.23A {Campylobacter jejuni subsp}

Probab=85.29  E-value=1.3  Score=47.33  Aligned_cols=71  Identities=13%  Similarity=0.168  Sum_probs=57.2

Q ss_pred             HHHHHHHHHHHhhhCCcCCCceEEecCcch-hhHHHHHHHHHHHhcccccccccCceecCCCCCCchHHHhhhccccchh
Q psy14377        688 SVAVAGLLASLRITKTRLSDNTILFQGAGE-GTASVAVAGLLASLRITKTRLSDNTILFQGAGEGTASVAIAGLLASLRI  766 (848)
Q Consensus       688 aV~LAgllaAlr~t~~~l~d~riv~~GAG~-A~~g~giA~ll~~~~~~~~~~~d~g~i~~~r~~~~~~~~~~~~~~~~r~  766 (848)
                      -+|-.|++..++-.+.+|++.++|++|+|. .  |-.+|.+|....++ +.+|+.      +               .+.
T Consensus       141 PcTp~gv~~lL~~~~i~l~Gk~vvVvGrs~iV--G~p~A~lL~~~gAt-Vtv~h~------~---------------t~~  196 (285)
T 3p2o_A          141 PCTPLGVMKLLKAYEIDLEGKDAVIIGASNIV--GRPMATMLLNAGAT-VSVCHI------K---------------TKD  196 (285)
T ss_dssp             CHHHHHHHHHHHHTTCCCTTCEEEEECCCTTT--HHHHHHHHHHTTCE-EEEECT------T---------------CSC
T ss_pred             CCCHHHHHHHHHHhCCCCCCCEEEEECCCchH--HHHHHHHHHHCCCe-EEEEeC------C---------------chh
Confidence            357788899999999999999999999876 7  99999999988754 554541      0               145


Q ss_pred             hccccCCCceEEeecC
Q psy14377        767 TKTRLSDNTILFQGSG  782 (848)
Q Consensus       767 ~~~~~~~~~~~~~~s~  782 (848)
                      +++.+..|||.|...+
T Consensus       197 L~~~~~~ADIVI~Avg  212 (285)
T 3p2o_A          197 LSLYTRQADLIIVAAG  212 (285)
T ss_dssp             HHHHHTTCSEEEECSS
T ss_pred             HHHHhhcCCEEEECCC
Confidence            7788999999998765

>1nvt_A Shikimate 5'-dehydrogenase; structural genomics, PSI, protein structure initiative; HET: NAP; 2.35A {Methanocaldococcus jannaschii} SCOP: c.2.1.7 c.58.1.5

Probab=84.81  E-value=0.81  Score=47.51  Aligned_cols=48  Identities=25%  Similarity=0.300  Sum_probs=38.8

Q ss_pred             HHHHHHHHHHHhCCcCCCceEEEeccchHHHHHHHHHHHHHHhcCCChhhhcCcEEEEcC
Q psy14377        223 DVAGLLASLRITKTRLSDNTILFQGAGEASLGIADLCVMAMQKEGTSEQDARDKIWMVDS  282 (848)
Q Consensus       223 ~lAgll~Al~~tg~~l~d~riv~~GAGaAg~gia~ll~~~m~~~G~s~~eA~~~i~~vD~  282 (848)
                      |..|++.+++-.+.++++.+++|.|||.+|.++|..+..    .|        +++++|+
T Consensus       111 d~~G~~~~L~~~~~~l~~k~vlV~GaGgiG~aia~~L~~----~G--------~V~v~~r  158 (287)
T 1nvt_A          111 DGIGARMALEEEIGRVKDKNIVIYGAGGAARAVAFELAK----DN--------NIIIANR  158 (287)
T ss_dssp             HHHHHHHHHHHHHCCCCSCEEEEECCSHHHHHHHHHHTS----SS--------EEEEECS
T ss_pred             CHHHHHHHHHHhCCCcCCCEEEEECchHHHHHHHHHHHH----CC--------CEEEEEC
Confidence            578999999988889999999999999888777776553    34        5777665

>3l07_A Bifunctional protein fold; structural genomics, IDP01849, methylenetetrahydrofolate dehydrogenase; 1.88A {Francisella tularensis}

Probab=84.35  E-value=1.5  Score=46.82  Aligned_cols=70  Identities=19%  Similarity=0.191  Sum_probs=56.5

Q ss_pred             HHHHHHHHHHhhhCCcCCCceEEecCcch-hhHHHHHHHHHHHhcccccccccCceecCCCCCCchHHHhhhccccchhh
Q psy14377        689 VAVAGLLASLRITKTRLSDNTILFQGAGE-GTASVAVAGLLASLRITKTRLSDNTILFQGAGEGTASVAIAGLLASLRIT  767 (848)
Q Consensus       689 V~LAgllaAlr~t~~~l~d~riv~~GAG~-A~~g~giA~ll~~~~~~~~~~~d~g~i~~~r~~~~~~~~~~~~~~~~r~~  767 (848)
                      +|-.|++..++-.+.+|++.++|++|+|. .  |-.+|.+|....++ +.+|+     +.                .+.+
T Consensus       143 cTp~gv~~lL~~~~i~l~Gk~vvVIG~s~iV--G~p~A~lL~~~gAt-Vtv~h-----s~----------------t~~L  198 (285)
T 3l07_A          143 CTPKGIMTMLREYGIKTEGAYAVVVGASNVV--GKPVSQLLLNAKAT-VTTCH-----RF----------------TTDL  198 (285)
T ss_dssp             HHHHHHHHHHHHTTCCCTTCEEEEECCCTTT--HHHHHHHHHHTTCE-EEEEC-----TT----------------CSSH
T ss_pred             CCHHHHHHHHHHhCCCCCCCEEEEECCCchh--HHHHHHHHHHCCCe-EEEEe-----CC----------------chhH
Confidence            57778889999999999999999999876 8  99999999988753 45443     10                1457


Q ss_pred             ccccCCCceEEeecC
Q psy14377        768 KTRLSDNTILFQGSG  782 (848)
Q Consensus       768 ~~~~~~~~~~~~~s~  782 (848)
                      ++.+.+|||.|...+
T Consensus       199 ~~~~~~ADIVI~Avg  213 (285)
T 3l07_A          199 KSHTTKADILIVAVG  213 (285)
T ss_dssp             HHHHTTCSEEEECCC
T ss_pred             HHhcccCCEEEECCC
Confidence            788999999998765

>3vrd_B FCCB subunit, flavocytochrome C flavin subunit; sulfide oxidation, heme C binding, FAD binding, electron TRA oxidoreductase complex; HET: HEC FAD; 1.50A {Thermochromatium tepidum} PDB: 1fcd_A*

Probab=83.97  E-value=0.89  Score=48.22  Aligned_cols=34  Identities=12%  Similarity=0.260  Sum_probs=27.2

Q ss_pred             eEEEeccchhHHHHHHHHHHHHHhcCCCccccCCeEEEEcCCC
Q psy14377         16 TILFQGAGEASLGIADLCVMAMQKEGTSEQDARDKIWMVDSKG   58 (848)
Q Consensus        16 kiV~~GAGaA~ia~a~L~~~am~~~G~~~e~~~~ni~m~DskG   58 (848)
                      ||||+|||.||+.||+-|.+    .|-+     -+|.++|++-
T Consensus         4 kVvIIG~G~AG~~aA~~L~~----~~~~-----~~Vtlie~~~   37 (401)
T 3vrd_B            4 KVVVVGGGTGGATAAKYIKL----ADPS-----IEVTLIEPNE   37 (401)
T ss_dssp             EEEEECCSHHHHHHHHHHHH----HCTT-----SEEEEECSCS
T ss_pred             EEEEECCcHHHHHHHHHHHh----cCcC-----CeEEEEeCCC
Confidence            69999999999999998874    4533     2799998754

>3kkj_A Amine oxidase, flavin-containing; oxidoreductase, PSR10, Q888A4, X-RAY, structure, PSI, protein structure initiative; HET: FAD; 2.50A {Pseudomonas syringae PV}

Probab=83.81  E-value=0.99  Score=41.53  Aligned_cols=31  Identities=29%  Similarity=0.428  Sum_probs=25.8

Q ss_pred             eEEEeccchHHHHHHHHHHHHHHhcCCChhhhcCcEEEEcCC
Q psy14377        242 TILFQGAGEASLGIADLCVMAMQKEGTSEQDARDKIWMVDSK  283 (848)
Q Consensus       242 riv~~GAGaAg~gia~ll~~~m~~~G~s~~eA~~~i~~vD~k  283 (848)
                      .|+|+|||.||+.+|..|.+.    |+       ++.++|+.
T Consensus         4 dV~IIGaGpaGL~aA~~La~~----G~-------~V~v~Ek~   34 (336)
T 3kkj_A            4 PIAIIGTGIAGLSAAQALTAA----GH-------QVHLFDKS   34 (336)
T ss_dssp             CEEEECCSHHHHHHHHHHHHT----TC-------CEEEECSS
T ss_pred             CEEEECcCHHHHHHHHHHHHC----CC-------CEEEEECC
Confidence            599999999999999987764    85       48888873

>4a9w_A Monooxygenase; baeyer-villiger, FAD, oxidoreductase; HET: FAD; 2.72A {Stenotrophomonas maltophilia}

Probab=83.46  E-value=0.9  Score=46.17  Aligned_cols=35  Identities=14%  Similarity=0.297  Sum_probs=29.0

Q ss_pred             CCceEEEeccchhHHHHHHHHHHHHHhcCCCccccCCeEEEEcCCC
Q psy14377         13 SDNTILFQGAGEASLGIADLCVMAMQKEGTSEQDARDKIWMVDSKG   58 (848)
Q Consensus        13 ~d~kiV~~GAGaA~ia~a~L~~~am~~~G~~~e~~~~ni~m~DskG   58 (848)
                      ++.+|||+|||.||+++|..|..    .|.       +|.++|+..
T Consensus         2 ~~~~vvIIG~G~aGl~~A~~l~~----~g~-------~v~vie~~~   36 (357)
T 4a9w_A            2 DSVDVVVIGGGQSGLSAGYFLRR----SGL-------SYVILDAEA   36 (357)
T ss_dssp             EEEEEEEECCSHHHHHHHHHHHH----SSC-------CEEEECCSS
T ss_pred             CcCCEEEECcCHHHHHHHHHHHH----CCC-------CEEEEECCC
Confidence            45789999999999999998874    674       689998764

>3u62_A Shikimate dehydrogenase; shikimate pathway, oxidoreductase; 1.45A {Thermotoga maritima}

Probab=83.43  E-value=1.2  Score=46.18  Aligned_cols=52  Identities=23%  Similarity=0.418  Sum_probs=40.6

Q ss_pred             hhhHHHHHHHHHHHHHhCCcCCCceEEEeccchHHHHHHHHHHHHHHhcCCChhhhcCcEEEEcC
Q psy14377        218 ESCVNDVAGLLASLRITKTRLSDNTILFQGAGEASLGIADLCVMAMQKEGTSEQDARDKIWMVDS  282 (848)
Q Consensus       218 TA~V~~lAgll~Al~~tg~~l~d~riv~~GAGaAg~gia~ll~~~m~~~G~s~~eA~~~i~~vD~  282 (848)
                      .+.=+|..|++.+|+-.  .+++ +++|+|||.+|.+++..|..    .|      .++|+++|+
T Consensus        89 ~G~NTD~~G~~~~l~~~--~~~~-~vliiGaGg~a~ai~~~L~~----~G------~~~I~v~nR  140 (253)
T 3u62_A           89 KGYNTDWVGVVKSLEGV--EVKE-PVVVVGAGGAARAVIYALLQ----MG------VKDIWVVNR  140 (253)
T ss_dssp             EEECCHHHHHHHHTTTC--CCCS-SEEEECCSHHHHHHHHHHHH----TT------CCCEEEEES
T ss_pred             EEEcchHHHHHHHHHhc--CCCC-eEEEECcHHHHHHHHHHHHH----cC------CCEEEEEeC
Confidence            44455677899998754  5788 99999999999999887665    47      357888877

>1a4i_A Methylenetetrahydrofolate dehydrogenase / methenyltetrahydrofolate cyclohydrolase...; THF, bifunctional, oxidoreductase; HET: NDP; 1.50A {Homo sapiens} SCOP: c.2.1.7 c.58.1.2 PDB: 1dia_A* 1dib_A* 1dig_A*

Probab=83.38  E-value=1.7  Score=46.84  Aligned_cols=72  Identities=13%  Similarity=0.145  Sum_probs=57.6

Q ss_pred             HHHHHHHHHHHhhhCCcCCCceEEecCcc-hhhHHHHHHHHHHHhcccccccccCceecCCCCCCchHHHhhhccccchh
Q psy14377        688 SVAVAGLLASLRITKTRLSDNTILFQGAG-EGTASVAVAGLLASLRITKTRLSDNTILFQGAGEGTASVAIAGLLASLRI  766 (848)
Q Consensus       688 aV~LAgllaAlr~t~~~l~d~riv~~GAG-~A~~g~giA~ll~~~~~~~~~~~d~g~i~~~r~~~~~~~~~~~~~~~~r~  766 (848)
                      -+|-.|++-.++-.+.+++..++|++|+| ..  |.-+|.++..... .+.+|+.                     ..+.
T Consensus       146 PcTp~gi~~ll~~~~i~l~gk~vvVIG~s~iV--G~p~A~lL~~~gA-tVtv~hs---------------------~t~~  201 (301)
T 1a4i_A          146 PCTPKGCLELIKETGVPIAGRHAVVVGRSKIV--GAPMHDLLLWNNA-TVTTCHS---------------------KTAH  201 (301)
T ss_dssp             CHHHHHHHHHHHTTTCCCTTCEEEEECCCTTT--HHHHHHHHHHTTC-EEEEECT---------------------TCSS
T ss_pred             CchHHHHHHHHHHcCCCCCCCEEEEECCCchH--HHHHHHHHHhCCC-eEEEEEC---------------------Cccc
Confidence            35677899999999999999999999999 57  9999999998774 3555541                     0245


Q ss_pred             hccccCCCceEEeecCC
Q psy14377        767 TKTRLSDNTILFQGSGE  783 (848)
Q Consensus       767 ~~~~~~~~~~~~~~s~~  783 (848)
                      +++.+.+|||.|+..+.
T Consensus       202 L~~~~~~ADIVI~Avg~  218 (301)
T 1a4i_A          202 LDEEVNKGDILVVATGQ  218 (301)
T ss_dssp             HHHHHTTCSEEEECCCC
T ss_pred             HHHHhccCCEEEECCCC
Confidence            77888999999987665

>4hb9_A Similarities with probable monooxygenase; flavin, structural genomics, NEW YORK structural genomics RE consortium, nysgrc, PSI; HET: MSE FAD; 1.93A {Photorhabdus luminescens}

Probab=83.21  E-value=1.2  Score=46.47  Aligned_cols=32  Identities=19%  Similarity=0.169  Sum_probs=27.2

Q ss_pred             ceEEEeccchhHHHHHHHHHHHHHhcCCCccccCCeEEEEcCC
Q psy14377         15 NTILFQGAGEASLGIADLCVMAMQKEGTSEQDARDKIWMVDSK   57 (848)
Q Consensus        15 ~kiV~~GAGaA~ia~a~L~~~am~~~G~~~e~~~~ni~m~Dsk   57 (848)
                      .||+|+|||.||+++|..|..    .|+       ++.++|+.
T Consensus         2 m~V~IVGaGpaGl~~A~~L~~----~G~-------~v~v~Er~   33 (412)
T 4hb9_A            2 MHVGIIGAGIGGTCLAHGLRK----HGI-------KVTIYERN   33 (412)
T ss_dssp             CEEEEECCSHHHHHHHHHHHH----TTC-------EEEEECSS
T ss_pred             CEEEEECcCHHHHHHHHHHHh----CCC-------CEEEEecC
Confidence            699999999999999998874    786       57777763

>3fbt_A Chorismate mutase and shikimate 5-dehydrogenase fusion protein; structural genomics, oxidoreductase, amino-acid biosynthesis; 2.10A {Clostridium acetobutylicum}

Probab=82.80  E-value=1.2  Score=47.14  Aligned_cols=56  Identities=20%  Similarity=0.207  Sum_probs=46.3

Q ss_pred             cCceeccCCchHHHHHHHHHHHHHhhhCCcCCCceEEecCcchhhHHHHHHHHHHHhccccccccc
Q psy14377        675 RYCVFNDDIQGTASVAVAGLLASLRITKTRLSDNTILFQGAGEGTASVAVAGLLASLRITKTRLSD  740 (848)
Q Consensus       675 ~~~~FnDDiQGTaaV~LAgllaAlr~t~~~l~d~riv~~GAG~A~~g~giA~ll~~~~~~~~~~~d  740 (848)
                      ++.-+|-|-        .|++.+++-.+.++++.+++++|||.+  |-+++..|...+++++.+.+
T Consensus        98 ~l~G~NTD~--------~G~~~~L~~~~~~~~~k~vlvlGaGGa--araia~~L~~~G~~~v~v~n  153 (282)
T 3fbt_A           98 GISGFNTDY--------IGFGKMLSKFRVEIKNNICVVLGSGGA--ARAVLQYLKDNFAKDIYVVT  153 (282)
T ss_dssp             CEEEECCHH--------HHHHHHHHHTTCCCTTSEEEEECSSTT--HHHHHHHHHHTTCSEEEEEE
T ss_pred             EEEeeCCcH--------HHHHHHHHHcCCCccCCEEEEECCcHH--HHHHHHHHHHcCCCEEEEEe
Confidence            355566662        688888888888999999999999999  99999999998877766554

>2hk9_A Shikimate dehydrogenase; shikimate pathway, drug design, oxidoreductase; HET: ATR SKM NAP; 2.20A {Aquifex aeolicus} PDB: 2hk8_A 2hk7_A

Probab=82.77  E-value=0.93  Score=46.83  Aligned_cols=84  Identities=23%  Similarity=0.208  Sum_probs=55.8

Q ss_pred             HHHHHHHhhhCCcCCCceEEecCcchhhHHHHHHHHHHHhcccccccccCceecCCCCCCchH-HHhhhccccchhhccc
Q psy14377        692 AGLLASLRITKTRLSDNTILFQGAGEGTASVAVAGLLASLRITKTRLSDNTILFQGAGEGTAS-VAIAGLLASLRITKTR  770 (848)
Q Consensus       692 AgllaAlr~t~~~l~d~riv~~GAG~A~~g~giA~ll~~~~~~~~~~~d~g~i~~~r~~~~~~-~~~~~~~~~~r~~~~~  770 (848)
                      .|++.+++-.+.++++.+++|+|+|.+  |-++|..|...+. ++.+++.-      ++.... .+..|..... .+++.
T Consensus       114 ~G~~~~l~~~~~~~~~~~v~iiGaG~~--g~aia~~L~~~g~-~V~v~~r~------~~~~~~l~~~~g~~~~~-~~~~~  183 (275)
T 2hk9_A          114 IGFLKSLKSLIPEVKEKSILVLGAGGA--SRAVIYALVKEGA-KVFLWNRT------KEKAIKLAQKFPLEVVN-SPEEV  183 (275)
T ss_dssp             HHHHHHHHHHCTTGGGSEEEEECCSHH--HHHHHHHHHHHTC-EEEEECSS------HHHHHHHTTTSCEEECS-CGGGT
T ss_pred             HHHHHHHHHhCCCcCCCEEEEECchHH--HHHHHHHHHHcCC-EEEEEECC------HHHHHHHHHHcCCeeeh-hHHhh
Confidence            377778877788899999999999999  9999999998876 55444411      000011 1111221111 45677


Q ss_pred             cCCCceEEeecCCCc
Q psy14377        771 LSDNTILFQGSGEGT  785 (848)
Q Consensus       771 ~~~~~~~~~~s~~~~  785 (848)
                      +.++|+.+-...-+.
T Consensus       184 ~~~aDiVi~atp~~~  198 (275)
T 2hk9_A          184 IDKVQVIVNTTSVGL  198 (275)
T ss_dssp             GGGCSEEEECSSTTS
T ss_pred             hcCCCEEEEeCCCCC
Confidence            889999988776665

>3d1c_A Flavin-containing putative monooxygenase; NP_373108.1, struc genomics, joint center for structural genomics, JCSG; HET: FAD UNL; 2.40A {Staphylococcus aureus}

Probab=82.48  E-value=1.2  Score=46.18  Aligned_cols=36  Identities=19%  Similarity=0.308  Sum_probs=29.6

Q ss_pred             CCceEEEeccchhHHHHHHHHHHHHHhcCCCccccCCeEEEEcCCC
Q psy14377         13 SDNTILFQGAGEASLGIADLCVMAMQKEGTSEQDARDKIWMVDSKG   58 (848)
Q Consensus        13 ~d~kiV~~GAGaA~ia~a~L~~~am~~~G~~~e~~~~ni~m~DskG   58 (848)
                      ++.+|||+|||.||+++|..+..    .|.      ++|.++|+..
T Consensus         3 ~~~~vvIIGaG~aGl~aA~~l~~----~g~------~~v~lie~~~   38 (369)
T 3d1c_A            3 QHHKVAIIGAGAAGIGMAITLKD----FGI------TDVIILEKGT   38 (369)
T ss_dssp             CEEEEEEECCSHHHHHHHHHHHH----TTC------CCEEEECSSS
T ss_pred             ccCcEEEECcCHHHHHHHHHHHH----cCC------CcEEEEecCC
Confidence            45689999999999999998874    664      2799999874

>3pwz_A Shikimate dehydrogenase 3; alpha-beta, oxidoreductase; 1.71A {Pseudomonas putida}

Probab=81.85  E-value=1.4  Score=46.20  Aligned_cols=48  Identities=17%  Similarity=0.156  Sum_probs=40.4

Q ss_pred             HHHHHHH-HhhhCCcCCCceEEecCcchhhHHHHHHHHHHHhccccccccc
Q psy14377        691 VAGLLAS-LRITKTRLSDNTILFQGAGEGTASVAVAGLLASLRITKTRLSD  740 (848)
Q Consensus       691 LAgllaA-lr~t~~~l~d~riv~~GAG~A~~g~giA~ll~~~~~~~~~~~d  740 (848)
                      ..|++.+ ++-.+.++++.+++|+|||.+  |-+++..|.+.+++++.+.+
T Consensus       103 ~~G~~~~lL~~~~~~l~~k~~lvlGaGg~--~~aia~~L~~~G~~~v~i~~  151 (272)
T 3pwz_A          103 GIGLLRDIEENLGEPLRNRRVLLLGAGGA--VRGALLPFLQAGPSELVIAN  151 (272)
T ss_dssp             HHHHHHHHHTTSCCCCTTSEEEEECCSHH--HHHHHHHHHHTCCSEEEEEC
T ss_pred             HHHHHHHHHHHcCCCccCCEEEEECccHH--HHHHHHHHHHcCCCEEEEEe
Confidence            3578888 887788999999999999999  99999999998876665444

>1npy_A Hypothetical shikimate 5-dehydrogenase-like protein HI0607; structural genomics, PSI, protein structure initiative; 1.75A {Haemophilus influenzae} SCOP: c.2.1.7 c.58.1.5

Probab=81.72  E-value=2  Score=44.88  Aligned_cols=52  Identities=10%  Similarity=0.196  Sum_probs=39.5

Q ss_pred             hHHHHHHHHHHHHHhCCcCCCceEEEeccchHHHHHHHHHHHHHHhcCCChhhhcCcEEEEcC
Q psy14377        220 CVNDVAGLLASLRITKTRLSDNTILFQGAGEASLGIADLCVMAMQKEGTSEQDARDKIWMVDS  282 (848)
Q Consensus       220 ~V~~lAgll~Al~~tg~~l~d~riv~~GAGaAg~gia~ll~~~m~~~G~s~~eA~~~i~~vD~  282 (848)
                      .-+|..|+..+++-.+.. ...+++|+|||.+|.+++..|..    .|      .++|+++++
T Consensus       100 ~NTD~~G~~~~l~~~~~~-~~~~vlvlGaGgaarav~~~L~~----~G------~~~i~v~nR  151 (271)
T 1npy_A          100 YNTDYIAIVKLIEKYHLN-KNAKVIVHGSGGMAKAVVAAFKN----SG------FEKLKIYAR  151 (271)
T ss_dssp             ECHHHHHHHHHHHHTTCC-TTSCEEEECSSTTHHHHHHHHHH----TT------CCCEEEECS
T ss_pred             ecCCHHHHHHHHHHhCCC-CCCEEEEECCcHHHHHHHHHHHH----CC------CCEEEEEeC
Confidence            344667888888766654 56899999999999999887664    37      457888765

>4a26_A Putative C-1-tetrahydrofolate synthase, cytoplasm; oxidoreductase, hydrolase, leishmaniasis; 2.70A {Leishmania major}

Probab=81.60  E-value=1.8  Score=46.45  Aligned_cols=72  Identities=15%  Similarity=0.243  Sum_probs=56.4

Q ss_pred             HHHHHHHHHHHhhhCCcCCCceEEecCcch-hhHHHHHHHHHHHhcccccccccCceecCCCCCCchHHHhhhccccchh
Q psy14377        688 SVAVAGLLASLRITKTRLSDNTILFQGAGE-GTASVAVAGLLASLRITKTRLSDNTILFQGAGEGTASVAIAGLLASLRI  766 (848)
Q Consensus       688 aV~LAgllaAlr~t~~~l~d~riv~~GAG~-A~~g~giA~ll~~~~~~~~~~~d~g~i~~~r~~~~~~~~~~~~~~~~r~  766 (848)
                      -+|-.|++..++-.+.+|+..++|++|+|. .  |..+|.+|....++ +.+|+.      ++.               .
T Consensus       146 PcTp~gv~~lL~~~~i~l~Gk~vvVIG~s~iV--G~p~A~lL~~~gAt-Vtv~~~------~T~---------------~  201 (300)
T 4a26_A          146 PCTAKGVIVLLKRCGIEMAGKRAVVLGRSNIV--GAPVAALLMKENAT-VTIVHS------GTS---------------T  201 (300)
T ss_dssp             CHHHHHHHHHHHHHTCCCTTCEEEEECCCTTT--HHHHHHHHHHTTCE-EEEECT------TSC---------------H
T ss_pred             CCCHHHHHHHHHHcCCCCCCCEEEEECCCchH--HHHHHHHHHHCCCe-EEEEeC------CCC---------------C
Confidence            357778889999999999999999999876 8  99999999988753 554542      111               3


Q ss_pred             hc--cccCCCceEEeecCC
Q psy14377        767 TK--TRLSDNTILFQGSGE  783 (848)
Q Consensus       767 ~~--~~~~~~~~~~~~s~~  783 (848)
                      ++  +.+.+|||.|...+.
T Consensus       202 l~l~~~~~~ADIVI~Avg~  220 (300)
T 4a26_A          202 EDMIDYLRTADIVIAAMGQ  220 (300)
T ss_dssp             HHHHHHHHTCSEEEECSCC
T ss_pred             chhhhhhccCCEEEECCCC
Confidence            44  788999999987664

>3o8q_A Shikimate 5-dehydrogenase I alpha; structural genomics, center for structural genomics of infec diseases, csgid; HET: EPE; 1.45A {Vibrio cholerae biovar el tor} PDB: 3sef_A* 3pgj_A* 3o8q_B*

Probab=81.53  E-value=1.3  Score=46.49  Aligned_cols=86  Identities=14%  Similarity=0.171  Sum_probs=56.1

Q ss_pred             HHHHHHHHhhhCCcCCCceEEecCcchhhHHHHHHHHHHHhcccccccccCceecCCCCCC-chHH-Hhhhc--cccchh
Q psy14377        691 VAGLLASLRITKTRLSDNTILFQGAGEGTASVAVAGLLASLRITKTRLSDNTILFQGAGEG-TASV-AIAGL--LASLRI  766 (848)
Q Consensus       691 LAgllaAlr~t~~~l~d~riv~~GAG~A~~g~giA~ll~~~~~~~~~~~d~g~i~~~r~~~-~~~~-~~~~~--~~~~r~  766 (848)
                      ..|++.+++-.+.++++.+++|+|||.+  |-+++..|...+++++.+.+       |... .... +..+-  ......
T Consensus       110 ~~G~~~~L~~~~~~l~~k~vlvlGaGg~--g~aia~~L~~~G~~~v~v~~-------R~~~~a~~la~~~~~~~~~~~~~  180 (281)
T 3o8q_A          110 GEGLVQDLLAQQVLLKGATILLIGAGGA--ARGVLKPLLDQQPASITVTN-------RTFAKAEQLAELVAAYGEVKAQA  180 (281)
T ss_dssp             HHHHHHHHHHTTCCCTTCEEEEECCSHH--HHHHHHHHHTTCCSEEEEEE-------SSHHHHHHHHHHHGGGSCEEEEE
T ss_pred             HHHHHHHHHHhCCCccCCEEEEECchHH--HHHHHHHHHhcCCCeEEEEE-------CCHHHHHHHHHHhhccCCeeEee
Confidence            3567778887788999999999999999  99999999998876665544       1111 1111 11110  011123


Q ss_pred             hccccCCCceEEeecCCCc
Q psy14377        767 TKTRLSDNTILFQGSGEGT  785 (848)
Q Consensus       767 ~~~~~~~~~~~~~~s~~~~  785 (848)
                      +++.-.++||.+....-|.
T Consensus       181 ~~~l~~~aDiIInaTp~gm  199 (281)
T 3o8q_A          181 FEQLKQSYDVIINSTSASL  199 (281)
T ss_dssp             GGGCCSCEEEEEECSCCCC
T ss_pred             HHHhcCCCCEEEEcCcCCC
Confidence            3443478999998776664

>3f8d_A Thioredoxin reductase (TRXB-3); redox protein, nucleotide binding, FAD, flavoprotein, oxidoreductase; HET: FAD; 1.40A {Sulfolobus solfataricus} PDB: 3f8p_A* 3f8r_A*

Probab=81.41  E-value=1.6  Score=43.80  Aligned_cols=33  Identities=18%  Similarity=0.204  Sum_probs=28.4

Q ss_pred             CceEEEeccchhHHHHHHHHHHHHHhcCCCccccCCeEEEEcCC
Q psy14377         14 DNTILFQGAGEASLGIADLCVMAMQKEGTSEQDARDKIWMVDSK   57 (848)
Q Consensus        14 d~kiV~~GAGaA~ia~a~L~~~am~~~G~~~e~~~~ni~m~Dsk   57 (848)
                      ..+|||+|||.||+++|.-+..    .|.       ++.++|+.
T Consensus        15 ~~~vvIIG~G~aGl~aA~~l~~----~g~-------~v~lie~~   47 (323)
T 3f8d_A           15 KFDVIIVGLGPAAYGAALYSAR----YML-------KTLVIGET   47 (323)
T ss_dssp             EEEEEEECCSHHHHHHHHHHHH----TTC-------CEEEEESS
T ss_pred             ccCEEEECccHHHHHHHHHHHH----CCC-------cEEEEecc
Confidence            4689999999999999998874    564       68999987

>3h8v_A Ubiquitin-like modifier-activating enzyme 5; rossman fold, ATP-binding, UBL conjugation pathway, transfer structural genomics consortium, SGC; HET: ATP; 2.00A {Homo sapiens} PDB: 3guc_A*

Probab=81.40  E-value=1.4  Score=46.85  Aligned_cols=39  Identities=15%  Similarity=0.267  Sum_probs=34.7

Q ss_pred             CcCCCceEEEeccchHHHHHHHHHHHHHHhcCCChhhhcCcEEEEcCCC
Q psy14377        236 TRLSDNTILFQGAGEASLGIADLCVMAMQKEGTSEQDARDKIWMVDSKG  284 (848)
Q Consensus       236 ~~l~d~riv~~GAGaAg~gia~ll~~~m~~~G~s~~eA~~~i~~vD~kG  284 (848)
                      ++|++.||+|+|+|..|..+|..|+.+    |      ..+|.++|.+=
T Consensus        32 ~kL~~~~VlVvGaGGlGs~va~~La~a----G------VG~i~lvD~D~   70 (292)
T 3h8v_A           32 EKIRTFAVAIVGVGGVGSVTAEMLTRC----G------IGKLLLFDYDK   70 (292)
T ss_dssp             CGGGGCEEEEECCSHHHHHHHHHHHHH----T------CSEEEEECCCB
T ss_pred             HHHhCCeEEEECcCHHHHHHHHHHHHc----C------CCEEEEECCCc
Confidence            578999999999999999999998877    8      57999999863

>1gtm_A Glutamate dehydrogenase; oxidoreductase, NAD, NADP; 2.20A {Pyrococcus furiosus} SCOP: c.2.1.7 c.58.1.1 PDB: 1bvu_A 1euz_A

Probab=81.37  E-value=6.4  Score=43.88  Aligned_cols=113  Identities=17%  Similarity=0.242  Sum_probs=82.2

Q ss_pred             CcchhHHHHHHHHHHHHhhCCceeeeeecCCCcchHH---HHHHHcc---cC-c---eeccC----------CchHHHHH
Q psy14377        631 GQAYDDFIEEFMQAVVARYGQHVLIQFEDFANHSAFR---FLDTYRN---RY-C---VFNDD----------IQGTASVA  690 (848)
Q Consensus       631 g~~y~~fvdefv~av~~~fGp~~~IqfEDf~~~naf~---lL~ryr~---~~-~---~FnDD----------iQGTaaV~  690 (848)
                      .+|-..|...|++++.+--||...|-=+|++.. ..+   +.+.|.+   .. +   ++-.+          -.-||-=+
T Consensus       116 ~~e~~~~~r~f~~~l~~~~g~~~dv~a~D~gt~-~~~m~~~~~~y~~~~~~~~~~~~~~tGk~~~~GGs~~~~~aTg~Gv  194 (419)
T 1gtm_A          116 DREKERLARGYIRAIYDVISPYEDIPAPDVYTN-PQIMAWMMDEYETISRRKTPAFGIITGKPLSIGGSLGRIEATARGA  194 (419)
T ss_dssp             HHHHHHHHHHHHHHHGGGCBTTTEECCBCTTCC-HHHHHHHHHHHHHHHTTSSCGGGGCSSCCGGGTCCTTTTTHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHhcCCCcEEeCCCCCCC-HHHHHHHHHHHHHhhCCCCCccceEecCcchhCCCCCCCcchhhHH
Confidence            345577888999999998889888999999873 322   2345533   21 2   33322          23466666


Q ss_pred             HHHHHHHHhhhCCc-CCCceEEecCcchhhHHHHHHHHHHH-hccccccccc-CceecC
Q psy14377        691 VAGLLASLRITKTR-LSDNTILFQGAGEGTASVAVAGLLAS-LRITKTRLSD-NTILFQ  746 (848)
Q Consensus       691 LAgllaAlr~t~~~-l~d~riv~~GAG~A~~g~giA~ll~~-~~~~~~~~~d-~g~i~~  746 (848)
                      .-++-.+++-.|.+ |++.++.|.|.|.-  |..+|+++.. .+++-+..+| .|.+|.
T Consensus       195 ~~~~~~~~~~~G~~~l~gktvgI~G~G~V--G~~vA~~l~~~~G~kVv~~sD~~g~~~~  251 (419)
T 1gtm_A          195 SYTIREAAKVLGWDTLKGKTIAIQGYGNA--GYYLAKIMSEDFGMKVVAVSDSKGGIYN  251 (419)
T ss_dssp             HHHHHHHHHHTTCSCSTTCEEEEECCSHH--HHHHHHHHHHTTCCEEEEEECSSCEEEE
T ss_pred             HHHHHHHHHHhCCcccCCCEEEEEcCCHH--HHHHHHHHHHhcCCEEEEEeCCCccccC
Confidence            66777888889999 99999999999999  9999999998 7766555666 665553

>3t4e_A Quinate/shikimate dehydrogenase; structural genomics, center for structural genomics of infec diseases, csgid; HET: NAD; 1.95A {Salmonella enterica subsp} PDB: 1npd_A* 1o9b_A* 1vi2_A*

Probab=81.06  E-value=1.5  Score=47.08  Aligned_cols=56  Identities=20%  Similarity=0.296  Sum_probs=45.4

Q ss_pred             cCceeccCCchHHHHHHHHHHHHHhhhCCcCCCceEEecCcchhhHHHHHHHHHHHhccccccccc
Q psy14377        675 RYCVFNDDIQGTASVAVAGLLASLRITKTRLSDNTILFQGAGEGTASVAVAGLLASLRITKTRLSD  740 (848)
Q Consensus       675 ~~~~FnDDiQGTaaV~LAgllaAlr~t~~~l~d~riv~~GAG~A~~g~giA~ll~~~~~~~~~~~d  740 (848)
                      ++.=+|=|-        .|++.+++-.+.++++.+++++|||.+  |-+++..|...+++++.+.+
T Consensus       124 ~l~G~NTD~--------~Gf~~~L~~~~~~l~gk~~lVlGAGGa--araia~~L~~~G~~~v~v~n  179 (312)
T 3t4e_A          124 YLRGYNTDG--------TGHIRAIKESGFDMRGKTMVLLGAGGA--ATAIGAQAAIEGIKEIKLFN  179 (312)
T ss_dssp             EEEEECHHH--------HHHHHHHHHTTCCCTTCEEEEECCSHH--HHHHHHHHHHTTCSEEEEEE
T ss_pred             EEEEeCCcH--------HHHHHHHHhcCCCcCCCEEEEECcCHH--HHHHHHHHHHcCCCEEEEEE
Confidence            466677773        456777777788899999999999999  99999999998887766544

>3tnl_A Shikimate dehydrogenase; structural genomics, center for structural genomics of infec diseases, csgid; HET: NAD SKM; 1.45A {Listeria monocytogenes} PDB: 3toz_A*

Probab=81.01  E-value=1.5  Score=46.95  Aligned_cols=56  Identities=14%  Similarity=0.146  Sum_probs=46.5

Q ss_pred             cCceeccCCchHHHHHHHHHHHHHhhhCCcCCCceEEecCcchhhHHHHHHHHHHHhccccccccc
Q psy14377        675 RYCVFNDDIQGTASVAVAGLLASLRITKTRLSDNTILFQGAGEGTASVAVAGLLASLRITKTRLSD  740 (848)
Q Consensus       675 ~~~~FnDDiQGTaaV~LAgllaAlr~t~~~l~d~riv~~GAG~A~~g~giA~ll~~~~~~~~~~~d  740 (848)
                      ++.=+|-|        -.|++.+++-.+.++++.+++++|||.+  |-++|..|...+++++.+.+
T Consensus       130 ~l~G~NTD--------~~Gf~~~L~~~~~~l~gk~~lVlGaGG~--g~aia~~L~~~Ga~~V~i~n  185 (315)
T 3tnl_A          130 VLTGHITD--------GTGYMRALKEAGHDIIGKKMTICGAGGA--ATAICIQAALDGVKEISIFN  185 (315)
T ss_dssp             EEEEECCH--------HHHHHHHHHHTTCCCTTSEEEEECCSHH--HHHHHHHHHHTTCSEEEEEE
T ss_pred             EEEEeCCC--------HHHHHHHHHHcCCCccCCEEEEECCChH--HHHHHHHHHHCCCCEEEEEE
Confidence            36668888        4567778887788999999999999999  99999999998877766544

>3jyo_A Quinate/shikimate dehydrogenase; enzyme-cofactor complex, amino-acid biosynthesis, aromatic A biosynthesis, NAD, oxidoreductase; HET: NAD; 1.00A {Corynebacterium glutamicum} PDB: 3jyp_A* 3jyq_A* 2nlo_A

Probab=80.85  E-value=1.6  Score=45.85  Aligned_cols=85  Identities=15%  Similarity=0.143  Sum_probs=56.2

Q ss_pred             HHHHHHHhhhCCcCCCceEEecCcchhhHHHHHHHHHHHhcccccccccCceecCCCCCCchH--HHhhh-----cc---
Q psy14377        692 AGLLASLRITKTRLSDNTILFQGAGEGTASVAVAGLLASLRITKTRLSDNTILFQGAGEGTAS--VAIAG-----LL---  761 (848)
Q Consensus       692 AgllaAlr~t~~~l~d~riv~~GAG~A~~g~giA~ll~~~~~~~~~~~d~g~i~~~r~~~~~~--~~~~~-----~~---  761 (848)
                      .|++.+++-.+.++++.+++++|||.+  |-+++..|...+++++.+.+       |...-..  .+..+     ..   
T Consensus       112 ~G~~~~l~~~~~~l~~k~vlVlGaGG~--g~aia~~L~~~G~~~v~i~~-------R~~~~a~~la~~~~~~~~~~~i~~  182 (283)
T 3jyo_A          112 SGFGRGMEEGLPNAKLDSVVQVGAGGV--GNAVAYALVTHGVQKLQVAD-------LDTSRAQALADVINNAVGREAVVG  182 (283)
T ss_dssp             HHHHHHHHHHCTTCCCSEEEEECCSHH--HHHHHHHHHHTTCSEEEEEC-------SSHHHHHHHHHHHHHHHTSCCEEE
T ss_pred             HHHHHHHHHhCcCcCCCEEEEECCcHH--HHHHHHHHHHCCCCEEEEEE-------CCHHHHHHHHHHHHhhcCCceEEE
Confidence            567778887788899999999999999  99999999998876665444       2211111  11111     00   


Q ss_pred             ccchhhccccCCCceEEeecCCCc
Q psy14377        762 ASLRITKTRLSDNTILFQGSGEGT  785 (848)
Q Consensus       762 ~~~r~~~~~~~~~~~~~~~s~~~~  785 (848)
                      .+.-.+++.+.++||.+..+.-|.
T Consensus       183 ~~~~~l~~~l~~~DiVInaTp~Gm  206 (283)
T 3jyo_A          183 VDARGIEDVIAAADGVVNATPMGM  206 (283)
T ss_dssp             ECSTTHHHHHHHSSEEEECSSTTS
T ss_pred             cCHHHHHHHHhcCCEEEECCCCCC
Confidence            011134456778999997766554

>3fbs_A Oxidoreductase; structural genomics, PSI2, MCSG, protein STR initiative, midwest center for structural genomics; HET: FAD; 2.15A {Agrobacterium tumefaciens}

Probab=80.43  E-value=1.6  Score=43.41  Aligned_cols=32  Identities=22%  Similarity=0.184  Sum_probs=27.2

Q ss_pred             ceEEEeccchhHHHHHHHHHHHHHhcCCCccccCCeEEEEcCC
Q psy14377         15 NTILFQGAGEASLGIADLCVMAMQKEGTSEQDARDKIWMVDSK   57 (848)
Q Consensus        15 ~kiV~~GAGaA~ia~a~L~~~am~~~G~~~e~~~~ni~m~Dsk   57 (848)
                      .+|||+|||.||+++|..|..    .|.       ++.++|+.
T Consensus         3 ~~vvIIG~G~aGl~aA~~l~~----~g~-------~v~lie~~   34 (297)
T 3fbs_A            3 FDVIIIGGSYAGLSAALQLGR----ARK-------NILLVDAG   34 (297)
T ss_dssp             EEEEEECCSHHHHHHHHHHHH----TTC-------CEEEEECC
T ss_pred             CCEEEECCCHHHHHHHHHHHh----CCC-------CEEEEeCC
Confidence            589999999999999998874    674       68999974

>1lu9_A Methylene tetrahydromethanopterin dehydrogenase; alpha/beta twisted open sheet structure, oxidoreductase; 1.90A {Methylobacterium extorquens} SCOP: c.2.1.7 c.58.1.4 PDB: 1lua_A*

Probab=80.39  E-value=3.7  Score=42.35  Aligned_cols=58  Identities=12%  Similarity=0.123  Sum_probs=46.6

Q ss_pred             EEEchhhHHHHHHHHHHHHHh-CCcCCCceEEEec-cchHHHHHHHHHHHHHHhcCCChhhhcCcEEEEcC
Q psy14377        214 ILIGESCVNDVAGLLASLRIT-KTRLSDNTILFQG-AGEASLGIADLCVMAMQKEGTSEQDARDKIWMVDS  282 (848)
Q Consensus       214 FqhGTA~V~~lAgll~Al~~t-g~~l~d~riv~~G-AGaAg~gia~ll~~~m~~~G~s~~eA~~~i~~vD~  282 (848)
                      +....+.-+|..|++.+++-. +.+++..+++|.| +|.+|.+++..+.+.    |      . +++++|+
T Consensus        92 ~~~~~G~nTd~~g~~~~l~~~~~~~l~gk~vlVtGaaGGiG~aia~~L~~~----G------~-~V~i~~R  151 (287)
T 1lu9_A           92 MLDSNGSNTTAAAGVALVVKAAGGSVKGKKAVVLAGTGPVGMRSAALLAGE----G------A-EVVLCGR  151 (287)
T ss_dssp             EECSTTHHHHHHHHHHHHHHHTTSCCTTCEEEEETCSSHHHHHHHHHHHHT----T------C-EEEEEES
T ss_pred             ecCCCcCCchHHHHHHHHHHhhccCCCCCEEEEECCCcHHHHHHHHHHHHC----c------C-EEEEEEC
Confidence            455667777889999999877 7889999999999 899999999877653    7      2 3888766

>1edz_A 5,10-methylenetetrahydrofolate dehydrogenase; nucleotide-binding domain, monofunctional, oxidoreductase; 2.80A {Saccharomyces cerevisiae} SCOP: c.2.1.7 c.58.1.2 PDB: 1ee9_A*

Probab=80.29  E-value=1.6  Score=47.23  Aligned_cols=120  Identities=20%  Similarity=0.196  Sum_probs=72.0

Q ss_pred             hCCcCCCceEEecCcch-hhHHHHHHHHHHHhccccccccc-CceecCCCCCCchHHHhhhcc-----ccchhhccccCC
Q psy14377        701 TKTRLSDNTILFQGAGE-GTASVAVAGLLASLRITKTRLSD-NTILFQGAGEGTASVAIAGLL-----ASLRITKTRLSD  773 (848)
Q Consensus       701 t~~~l~d~riv~~GAG~-A~~g~giA~ll~~~~~~~~~~~d-~g~i~~~r~~~~~~~~~~~~~-----~~~r~~~~~~~~  773 (848)
                      .+.++...++|++|+|. .  |--+|+++...+. .+.+|+ +..--..|.+.+...  .+..     ++...+++.+.+
T Consensus       171 ~g~~l~gk~vvVIG~G~iV--G~~~A~~L~~~gA-tVtv~nR~~~~l~~ra~~la~~--~~~~t~~~~t~~~~L~e~l~~  245 (320)
T 1edz_A          171 EGNRLYGKKCIVINRSEIV--GRPLAALLANDGA-TVYSVDVNNIQKFTRGESLKLN--KHHVEDLGEYSEDLLKKCSLD  245 (320)
T ss_dssp             TTCTTTTCEEEEECCCTTT--HHHHHHHHHTTSC-EEEEECSSEEEEEESCCCSSCC--CCEEEEEEECCHHHHHHHHHH
T ss_pred             cCCCCCCCEEEEECCCcch--HHHHHHHHHHCCC-EEEEEeCchHHHHhHHHHHhhh--cccccccccccHhHHHHHhcc
Confidence            67799999999999994 6  8899999999885 477777 433222233333211  1112     233678899999


Q ss_pred             CceEEeecCCCcchhhhhhhhheeeeecccccccceeecccccccchhhHHHHHHHhHhhhcceeecccccc
Q psy14377        774 NTILFQGSGEGTASVAVAGVLASLRITKTRLSDNTILFQGAGEDRNERLFYRLLSEYVVELMPIVYTPTVGL  845 (848)
Q Consensus       774 ~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~p~~y~p~~~~  845 (848)
                      |||.|+..+.-           .+-|++.-+....++.--.. +||       +.+.+.+. .-.|||.||.
T Consensus       246 ADIVIsAtg~p-----------~~vI~~e~vk~GavVIDVgi-~rD-------~d~~v~~~-a~~itPvVGp  297 (320)
T 1edz_A          246 SDVVITGVPSE-----------NYKFPTEYIKEGAVCINFAC-TKN-------FSDDVKEK-ASLYVPMTGK  297 (320)
T ss_dssp             CSEEEECCCCT-----------TCCBCTTTSCTTEEEEECSS-SCC-------BCGGGGTT-EEEEESCCHH
T ss_pred             CCEEEECCCCC-----------cceeCHHHcCCCeEEEEcCC-Ccc-------cchhHHhh-CCeeCCCccH
Confidence            99999766541           12355555544333322222 331       01233443 5669998873

>1l7d_A Nicotinamide nucleotide transhydrogenase, subunit alpha 1; transhydrogenase domain I, oxidoreductase; 1.81A {Rhodospirillum rubrum} SCOP: c.2.1.4 c.23.12.2 PDB: 1hzz_A* 1f8g_A 1l7e_A* 1u28_A* 1u2d_A* 1u2g_A* 1xlt_A* 2oo5_A* 2oor_A* 2frd_A* 2fsv_A* 1nm5_A* 2fr8_A* 1ptj_A*

Probab=80.11  E-value=3  Score=45.23  Aligned_cols=45  Identities=11%  Similarity=0.137  Sum_probs=34.5

Q ss_pred             HHHHHHhhhCC----------cCCCceEEecCcchhhHHHHHHHHHHHhccccccccc
Q psy14377        693 GLLASLRITKT----------RLSDNTILFQGAGEGTASVAVAGLLASLRITKTRLSD  740 (848)
Q Consensus       693 gllaAlr~t~~----------~l~d~riv~~GAG~A~~g~giA~ll~~~~~~~~~~~d  740 (848)
                      +++.+.+..++          .+...+++|+|+|.+  |.++++.+...+++ +...|
T Consensus       148 av~~~~~~~~~~~~~~~~~~~~l~g~~V~ViGaG~i--G~~aa~~a~~~Ga~-V~~~d  202 (384)
T 1l7d_A          148 AVIDGAYEFARAFPMMMTAAGTVPPARVLVFGVGVA--GLQAIATAKRLGAV-VMATD  202 (384)
T ss_dssp             HHHHHHHHCSSCSSCEEETTEEECCCEEEEECCSHH--HHHHHHHHHHTTCE-EEEEC
T ss_pred             HHHHHHHHhhhcccchhccCCCCCCCEEEEECCCHH--HHHHHHHHHHCCCE-EEEEe
Confidence            45555555443          678999999999999  99999999888863 55554

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	848
d1gq2a2	257	c.58.1.3 (A:23-279) Mitochondrial NAD(P)-dependent	3e-96
d1gq2a2	257	c.58.1.3 (A:23-279) Mitochondrial NAD(P)-dependent	2e-27
d1gq2a2	257	c.58.1.3 (A:23-279) Mitochondrial NAD(P)-dependent	2e-10
d1o0sa2	294	c.58.1.3 (A:2-295) Mitochondrial NAD(P)-dependent	6e-95
d1o0sa2	294	c.58.1.3 (A:2-295) Mitochondrial NAD(P)-dependent	9e-29
d1o0sa2	294	c.58.1.3 (A:2-295) Mitochondrial NAD(P)-dependent	2e-10
d1pj3a2	259	c.58.1.3 (A:21-279) Mitochondrial NAD(P)-dependent	5e-94
d1pj3a2	259	c.58.1.3 (A:21-279) Mitochondrial NAD(P)-dependent	3e-20
d1pj3a2	259	c.58.1.3 (A:21-279) Mitochondrial NAD(P)-dependent	1e-17
d1pj3a2	259	c.58.1.3 (A:21-279) Mitochondrial NAD(P)-dependent	1e-10
d1o0sa1	308	c.2.1.7 (A:296-603) Mitochondrial NAD(P)-dependent	3e-22
d1o0sa1	308	c.2.1.7 (A:296-603) Mitochondrial NAD(P)-dependent	1e-20
d1o0sa1	308	c.2.1.7 (A:296-603) Mitochondrial NAD(P)-dependent	8e-16
d1o0sa1	308	c.2.1.7 (A:296-603) Mitochondrial NAD(P)-dependent	2e-12
d1o0sa1	308	c.2.1.7 (A:296-603) Mitochondrial NAD(P)-dependent	6e-11
d1o0sa1	308	c.2.1.7 (A:296-603) Mitochondrial NAD(P)-dependent	2e-09
d1o0sa1	308	c.2.1.7 (A:296-603) Mitochondrial NAD(P)-dependent	2e-07
d1o0sa1	308	c.2.1.7 (A:296-603) Mitochondrial NAD(P)-dependent	2e-06
d1gq2a1	298	c.2.1.7 (A:280-580) Mitochondrial NAD(P)-dependent	1e-20
d1gq2a1	298	c.2.1.7 (A:280-580) Mitochondrial NAD(P)-dependent	3e-20
d1gq2a1	298	c.2.1.7 (A:280-580) Mitochondrial NAD(P)-dependent	1e-13
d1gq2a1	298	c.2.1.7 (A:280-580) Mitochondrial NAD(P)-dependent	3e-12
d1gq2a1	298	c.2.1.7 (A:280-580) Mitochondrial NAD(P)-dependent	9e-11
d1gq2a1	298	c.2.1.7 (A:280-580) Mitochondrial NAD(P)-dependent	2e-09
d1gq2a1	298	c.2.1.7 (A:280-580) Mitochondrial NAD(P)-dependent	3e-07
d1gq2a1	298	c.2.1.7 (A:280-580) Mitochondrial NAD(P)-dependent	2e-06
d1pj3a1	294	c.2.1.7 (A:280-573) Mitochondrial NAD(P)-dependent	9e-20
d1pj3a1	294	c.2.1.7 (A:280-573) Mitochondrial NAD(P)-dependent	2e-19
d1pj3a1	294	c.2.1.7 (A:280-573) Mitochondrial NAD(P)-dependent	2e-13
d1pj3a1	294	c.2.1.7 (A:280-573) Mitochondrial NAD(P)-dependent	5e-11
d1pj3a1	294	c.2.1.7 (A:280-573) Mitochondrial NAD(P)-dependent	1e-10
d1pj3a1	294	c.2.1.7 (A:280-573) Mitochondrial NAD(P)-dependent	2e-09
d1pj3a1	294	c.2.1.7 (A:280-573) Mitochondrial NAD(P)-dependent	2e-07
d1pj3a1	294	c.2.1.7 (A:280-573) Mitochondrial NAD(P)-dependent	2e-06
d1vl6a1	222	c.2.1.7 (A:155-376) Malate oxidoreductase (malic e	2e-13
d1vl6a1	222	c.2.1.7 (A:155-376) Malate oxidoreductase (malic e	2e-12
d1vl6a1	222	c.2.1.7 (A:155-376) Malate oxidoreductase (malic e	4e-11
d1vl6a1	222	c.2.1.7 (A:155-376) Malate oxidoreductase (malic e	5e-09
d1vl6a1	222	c.2.1.7 (A:155-376) Malate oxidoreductase (malic e	3e-07
d1vl6a1	222	c.2.1.7 (A:155-376) Malate oxidoreductase (malic e	4e-07
d1vl6a1	222	c.2.1.7 (A:155-376) Malate oxidoreductase (malic e	3e-04
d1vl6a2	154	c.58.1.3 (A:1-154) Malate oxidoreductase (malic en	2e-04

>d1gq2a2 c.58.1.3 (A:23-279) Mitochondrial NAD(P)-dependent malic enzyme {Domestic pigeon (Columba livia) [TaxId: 8932]} Length = 257

class: Alpha and beta proteins (a/b)
fold: Aminoacid dehydrogenase-like, N-terminal domain
superfamily: Aminoacid dehydrogenase-like, N-terminal domain
family: Malic enzyme N-domain
domain: Mitochondrial NAD(P)-dependent malic enzyme
species: Domestic pigeon (Columba livia) [TaxId: 8932]

 Score =  299 bits (767), Expect = 3e-96
 Identities = 128/179 (71%), Positives = 150/179 (83%)

Query: 504 QEYVVELMPIVYTPTVGLACQKYGLIFRRPRGLFISIHDKGHISEVLRNWPETDIRAIVV 563
              +   MPIVYTPTVGLACQ YGL FRRPRGLFI+IHD+GHI+ +L++WPE+ I+AIVV
Sbjct: 79  TSDIERFMPIVYTPTVGLACQHYGLAFRRPRGLFITIHDRGHIATMLQSWPESVIKAIVV 138

Query: 564 TDGERILGLGDLGAYGMGIPVGKLSLYTALAGIKPHQCLPITLDVGTNTQQLLDDPLYIG 623
           TDGERILGLGDLG YGMGIPVGKL+LYTA  G+KPHQCLP+ LDVGT+ + LL DPLYIG
Sbjct: 139 TDGERILGLGDLGCYGMGIPVGKLALYTACGGVKPHQCLPVMLDVGTDNETLLKDPLYIG 198

Query: 624 LRQRRTTGQAYDDFIEEFMQAVVARYGQHVLIQFEDFANHSAFRFLDTYRNRYCVFNDD 682
           LR +R  GQAYDD ++EFM+AV +RYG + LIQFEDFAN +AFR L  YRN+YC FNDD
Sbjct: 199 LRHKRIRGQAYDDLLDEFMEAVTSRYGMNCLIQFEDFANANAFRLLHKYRNKYCTFNDD 257

>d1gq2a2 c.58.1.3 (A:23-279) Mitochondrial NAD(P)-dependent malic enzyme {Domestic pigeon (Columba livia) [TaxId: 8932]} Length = 257

class: Alpha and beta proteins (a/b)
fold: Aminoacid dehydrogenase-like, N-terminal domain
superfamily: Aminoacid dehydrogenase-like, N-terminal domain
family: Malic enzyme N-domain
domain: Mitochondrial NAD(P)-dependent malic enzyme
species: Domestic pigeon (Columba livia) [TaxId: 8932]

 Score =  110 bits (276), Expect = 2e-27
 Identities = 65/172 (37%), Positives = 87/172 (50%), Gaps = 61/172 (35%)

Query: 319 GMAFSIEERQALGIHGLLPA------------------------------AVKSQDEQL- 347
           GMAF++EERQ L IHGLLP                               +++ ++E+L 
Sbjct: 15  GMAFTLEERQQLNIHGLLPPCFLGQDAQVYSILKNFERLTSDLDRYILLMSLQDRNEKLF 74

Query: 348 -HLCKLNVDR--------------------YEDPLNKYIY---------LQALAVKTDIR 377
             +   +++R                    +  P   +I          +     ++ I+
Sbjct: 75  YKVLTSDIERFMPIVYTPTVGLACQHYGLAFRRPRGLFITIHDRGHIATMLQSWPESVIK 134

Query: 378 AIVVTDGERILGLGDLGAYGMGIPVGKLSLYTALAGIKPHQCLPITLDVGTN 429
           AIVVTDGERILGLGDLG YGMGIPVGKL+LYTA  G+KPHQCLP+ LDVGT+
Sbjct: 135 AIVVTDGERILGLGDLGCYGMGIPVGKLALYTACGGVKPHQCLPVMLDVGTD 186

>d1gq2a2 c.58.1.3 (A:23-279) Mitochondrial NAD(P)-dependent malic enzyme {Domestic pigeon (Columba livia) [TaxId: 8932]} Length = 257

class: Alpha and beta proteins (a/b)
fold: Aminoacid dehydrogenase-like, N-terminal domain
superfamily: Aminoacid dehydrogenase-like, N-terminal domain
family: Malic enzyme N-domain
domain: Mitochondrial NAD(P)-dependent malic enzyme
species: Domestic pigeon (Columba livia) [TaxId: 8932]

 Score = 60.1 bits (146), Expect = 2e-10
 Identities = 22/33 (66%), Positives = 28/33 (84%)

Query: 816 EDRNERLFYRLLSEYVVELMPIVYTPTVGLACQ 848
           +DRNE+LFY++L+  +   MPIVYTPTVGLACQ
Sbjct: 67  QDRNEKLFYKVLTSDIERFMPIVYTPTVGLACQ 99

>d1o0sa2 c.58.1.3 (A:2-295) Mitochondrial NAD(P)-dependent malic enzyme {Pig roundworm (Ascaris suum) [TaxId: 6253]} Length = 294

class: Alpha and beta proteins (a/b)
fold: Aminoacid dehydrogenase-like, N-terminal domain
superfamily: Aminoacid dehydrogenase-like, N-terminal domain
family: Malic enzyme N-domain
domain: Mitochondrial NAD(P)-dependent malic enzyme
species: Pig roundworm (Ascaris suum) [TaxId: 6253]

 Score =  297 bits (762), Expect = 6e-95
 Identities = 114/181 (62%), Positives = 143/181 (79%), Gaps = 2/181 (1%)

Query: 504 QEYVVELMPIVYTPTVGLACQKYGLIFRRPRGLFISIHDK--GHISEVLRNWPETDIRAI 561
            ++V ELMPIVYTPTVGLACQ +G I+R+P+GL+I+I+D     I ++L NW E D+RAI
Sbjct: 114 CDHVKELMPIVYTPTVGLACQNFGYIYRKPKGLYITINDNSVSKIYQILSNWHEEDVRAI 173

Query: 562 VVTDGERILGLGDLGAYGMGIPVGKLSLYTALAGIKPHQCLPITLDVGTNTQQLLDDPLY 621
           VVTDGERILGLGDLGAYG+GIPVGKL+LY AL G++P  CLP+ LDVGTN   LL+DP Y
Sbjct: 174 VVTDGERILGLGDLGAYGIGIPVGKLALYVALGGVQPKWCLPVLLDVGTNNMDLLNDPFY 233

Query: 622 IGLRQRRTTGQAYDDFIEEFMQAVVARYGQHVLIQFEDFANHSAFRFLDTYRNRYCVFND 681
           IGLR +R  G+ YD  ++ FM+A   +YGQ  LIQFEDFAN +AFR LD Y+++Y +FND
Sbjct: 234 IGLRHKRVRGKDYDTLLDNFMKACTKKYGQKTLIQFEDFANPNAFRLLDKYQDKYTMFND 293

Query: 682 D 682
           D
Sbjct: 294 D 294

>d1o0sa2 c.58.1.3 (A:2-295) Mitochondrial NAD(P)-dependent malic enzyme {Pig roundworm (Ascaris suum) [TaxId: 6253]} Length = 294

class: Alpha and beta proteins (a/b)
fold: Aminoacid dehydrogenase-like, N-terminal domain
superfamily: Aminoacid dehydrogenase-like, N-terminal domain
family: Malic enzyme N-domain
domain: Mitochondrial NAD(P)-dependent malic enzyme
species: Pig roundworm (Ascaris suum) [TaxId: 6253]

 Score =  114 bits (288), Expect = 9e-29
 Identities = 72/200 (36%), Positives = 97/200 (48%), Gaps = 68/200 (34%)

Query: 298 HKVHYAKKHAPVKNLADVVKT-----GMAFSIEERQALGIHGLLPAAVKS---------- 342
           +K++  ++  P K  A+++K      GM FS+ ERQ LG+HGLLP A  +          
Sbjct: 24  YKLYRPERVTPKKRSAELLKEPRLNKGMGFSLYERQYLGLHGLLPPAFMTQEQQAYRVIT 83

Query: 343 --------------------QDEQL--HLCKLNVDR--------------------YEDP 360
                               ++E+L   +   +V                      Y  P
Sbjct: 84  KLREQPNDLARYIQLDGLQDRNEKLFYRVVCDHVKELMPIVYTPTVGLACQNFGYIYRKP 143

Query: 361 LNKYIYLQALAV-----------KTDIRAIVVTDGERILGLGDLGAYGMGIPVGKLSLYT 409
              YI +   +V           + D+RAIVVTDGERILGLGDLGAYG+GIPVGKL+LY 
Sbjct: 144 KGLYITINDNSVSKIYQILSNWHEEDVRAIVVTDGERILGLGDLGAYGIGIPVGKLALYV 203

Query: 410 ALAGIKPHQCLPITLDVGTN 429
           AL G++P  CLP+ LDVGTN
Sbjct: 204 ALGGVQPKWCLPVLLDVGTN 223

>d1o0sa2 c.58.1.3 (A:2-295) Mitochondrial NAD(P)-dependent malic enzyme {Pig roundworm (Ascaris suum) [TaxId: 6253]} Length = 294

class: Alpha and beta proteins (a/b)
fold: Aminoacid dehydrogenase-like, N-terminal domain
superfamily: Aminoacid dehydrogenase-like, N-terminal domain
family: Malic enzyme N-domain
domain: Mitochondrial NAD(P)-dependent malic enzyme
species: Pig roundworm (Ascaris suum) [TaxId: 6253]

 Score = 60.6 bits (147), Expect = 2e-10
 Identities = 25/33 (75%), Positives = 31/33 (93%)

Query: 816 EDRNERLFYRLLSEYVVELMPIVYTPTVGLACQ 848
           +DRNE+LFYR++ ++V ELMPIVYTPTVGLACQ
Sbjct: 102 QDRNEKLFYRVVCDHVKELMPIVYTPTVGLACQ 134

>d1pj3a2 c.58.1.3 (A:21-279) Mitochondrial NAD(P)-dependent malic enzyme {Human (Homo sapiens) [TaxId: 9606]} Length = 259

class: Alpha and beta proteins (a/b)
fold: Aminoacid dehydrogenase-like, N-terminal domain
superfamily: Aminoacid dehydrogenase-like, N-terminal domain
family: Malic enzyme N-domain
domain: Mitochondrial NAD(P)-dependent malic enzyme
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  293 bits (752), Expect = 5e-94
 Identities = 119/179 (66%), Positives = 144/179 (80%)

Query: 504 QEYVVELMPIVYTPTVGLACQKYGLIFRRPRGLFISIHDKGHISEVLRNWPETDIRAIVV 563
           Q+ +  LMPIVYTPTVGLAC +YG IFRRP+GLFISI D+GH+  ++ NWPE  ++A+VV
Sbjct: 81  QDDIESLMPIVYTPTVGLACSQYGHIFRRPKGLFISISDRGHVRSIVDNWPENHVKAVVV 140

Query: 564 TDGERILGLGDLGAYGMGIPVGKLSLYTALAGIKPHQCLPITLDVGTNTQQLLDDPLYIG 623
           TDGERILGLGDLG YGMGIPVGKL LYTA AGI+P +CLP+ +DVGT+   LL DP Y+G
Sbjct: 141 TDGERILGLGDLGVYGMGIPVGKLCLYTACAGIRPDRCLPVCIDVGTDNIALLKDPFYMG 200

Query: 624 LRQRRTTGQAYDDFIEEFMQAVVARYGQHVLIQFEDFANHSAFRFLDTYRNRYCVFNDD 682
           L Q+R   Q YDD I+EFM+A+  RYG++ LIQFEDF NH+AFRFL  YR +YC FNDD
Sbjct: 201 LYQKRDRTQQYDDLIDEFMKAITDRYGRNTLIQFEDFGNHNAFRFLRKYREKYCTFNDD 259

>d1pj3a2 c.58.1.3 (A:21-279) Mitochondrial NAD(P)-dependent malic enzyme {Human (Homo sapiens) [TaxId: 9606]} Length = 259

class: Alpha and beta proteins (a/b)
fold: Aminoacid dehydrogenase-like, N-terminal domain
superfamily: Aminoacid dehydrogenase-like, N-terminal domain
family: Malic enzyme N-domain
domain: Mitochondrial NAD(P)-dependent malic enzyme
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 89.0 bits (221), Expect = 3e-20
 Identities = 42/83 (50%), Positives = 55/83 (66%), Gaps = 7/83 (8%)

Query: 347 LHLCKLNVDRYEDPLNKYIYLQALAVKTDIRAIVVTDGERILGLGDLGAYGMGIPVGKLS 406
           L +   +       ++ +           ++A+VVTDGERILGLGDLG YGMGIPVGKL 
Sbjct: 113 LFISISDRGHVRSIVDNWPE-------NHVKAVVVTDGERILGLGDLGVYGMGIPVGKLC 165

Query: 407 LYTALAGIKPHQCLPITLDVGTN 429
           LYTA AGI+P +CLP+ +DVGT+
Sbjct: 166 LYTACAGIRPDRCLPVCIDVGTD 188

>d1pj3a2 c.58.1.3 (A:21-279) Mitochondrial NAD(P)-dependent malic enzyme {Human (Homo sapiens) [TaxId: 9606]} Length = 259

class: Alpha and beta proteins (a/b)
fold: Aminoacid dehydrogenase-like, N-terminal domain
superfamily: Aminoacid dehydrogenase-like, N-terminal domain
family: Malic enzyme N-domain
domain: Mitochondrial NAD(P)-dependent malic enzyme
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 81.3 bits (201), Expect = 1e-17
 Identities = 23/52 (44%), Positives = 34/52 (65%)

Query: 319 GMAFSIEERQALGIHGLLPAAVKSQDEQLHLCKLNVDRYEDPLNKYIYLQAL 370
           GMAF+++ERQ LG+ GLLP  +++QD Q      N+ +   PL KYIY+  +
Sbjct: 17  GMAFTLQERQMLGLQGLLPPKIETQDIQALRFHRNLKKMTSPLEKYIYIMGI 68

>d1pj3a2 c.58.1.3 (A:21-279) Mitochondrial NAD(P)-dependent malic enzyme {Human (Homo sapiens) [TaxId: 9606]} Length = 259

class: Alpha and beta proteins (a/b)
fold: Aminoacid dehydrogenase-like, N-terminal domain
superfamily: Aminoacid dehydrogenase-like, N-terminal domain
family: Malic enzyme N-domain
domain: Mitochondrial NAD(P)-dependent malic enzyme
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 60.5 bits (147), Expect = 1e-10
 Identities = 24/59 (40%), Positives = 34/59 (57%), Gaps = 2/59 (3%)

Query: 790 VAGVLASLRITKTRLSDNTILFQGAGEDRNERLFYRLLSEYVVELMPIVYTPTVGLACQ 848
                 +L+   + L     +     ++RNE+LFYR+L + +  LMPIVYTPTVGLAC 
Sbjct: 45  ALRFHRNLKKMTSPLEKYIYIM--GIQERNEKLFYRILQDDIESLMPIVYTPTVGLACS 101

>d1o0sa1 c.2.1.7 (A:296-603) Mitochondrial NAD(P)-dependent malic enzyme {Pig roundworm (Ascaris suum) [TaxId: 6253]} Length = 308

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Mitochondrial NAD(P)-dependent malic enzyme
species: Pig roundworm (Ascaris suum) [TaxId: 6253]

 Score = 95.8 bits (238), Expect = 3e-22
 Identities = 40/117 (34%), Positives = 64/117 (54%), Gaps = 4/117 (3%)

Query: 224 VAGLLASLRITKTRLSDNTILFQGAGEASLGIADLCVMAMQKEGTSEQDARDKIWMVDSK 283
           VAGLL   R+TK  +S    LF GAG AS GIA++ V  MQ EG S+++A ++I+++D  
Sbjct: 9   VAGLLTCTRVTKKLVSQEKYLFFGAGAASTGIAEMIVHQMQNEGISKEEACNRIYLMDID 68

Query: 284 GLIVKDRPEGGVTGHKVHYAKKHAPVKNLADVVKTGMAFSIEERQALGIHGLLPAAV 340
           GL+ K+R E  +    V +AK      ++ +V++     ++    A  + G     V
Sbjct: 69  GLVTKNRKE--MNPRHVQFAKDMPETTSILEVIRAARPGAL--IGASTVRGAFNEEV 121

>d1o0sa1 c.2.1.7 (A:296-603) Mitochondrial NAD(P)-dependent malic enzyme {Pig roundworm (Ascaris suum) [TaxId: 6253]} Length = 308

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Mitochondrial NAD(P)-dependent malic enzyme
species: Pig roundworm (Ascaris suum) [TaxId: 6253]

 Score = 91.6 bits (227), Expect = 1e-20
 Identities = 38/121 (31%), Positives = 64/121 (52%), Gaps = 4/121 (3%)

Query: 1   LLASLRITKTRLSDNTILFQGAGEASLGIADLCVMAMQKEGTSEQDARDKIWMVDSKGLI 60
           LL   R+TK  +S    LF GAG AS GIA++ V  MQ EG S+++A ++I+++D  GL+
Sbjct: 12  LLTCTRVTKKLVSQEKYLFFGAGAASTGIAEMIVHQMQNEGISKEEACNRIYLMDIDGLV 71

Query: 61  VKDRPEGGVTGHKVHYAKKHAPVKNLADVVKTVKPSILIEEL--KGLSQRDFLSSWLNRG 118
            K+R E  +    V +AK      ++ +V++  +P  LI     +G    + + +     
Sbjct: 72  TKNRKE--MNPRHVQFAKDMPETTSILEVIRAARPGALIGASTVRGAFNEEVIRAMAEIN 129

Query: 119 P 119
            
Sbjct: 130 E 130

>d1o0sa1 c.2.1.7 (A:296-603) Mitochondrial NAD(P)-dependent malic enzyme {Pig roundworm (Ascaris suum) [TaxId: 6253]} Length = 308

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Mitochondrial NAD(P)-dependent malic enzyme
species: Pig roundworm (Ascaris suum) [TaxId: 6253]

 Score = 76.9 bits (189), Expect = 8e-16
 Identities = 39/72 (54%), Positives = 51/72 (70%)

Query: 433 AAAIPQVFTADILKDMAAFNKRPIIFALSNPTSKAECTAEQAYVNTDGRGVFASGSPFDP 492
           A+ +   F  ++++ MA  N+RPIIFALSNPTSKAECTAE+AY  T+G  ++ASGSPF  
Sbjct: 110 ASTVRGAFNEEVIRAMAEINERPIIFALSNPTSKAECTAEEAYTFTNGAALYASGSPFPN 169

Query: 493 VTYKGKTFTPGQ 504
               G T+ PGQ
Sbjct: 170 FELNGHTYKPGQ 181

>d1o0sa1 c.2.1.7 (A:296-603) Mitochondrial NAD(P)-dependent malic enzyme {Pig roundworm (Ascaris suum) [TaxId: 6253]} Length = 308

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Mitochondrial NAD(P)-dependent malic enzyme
species: Pig roundworm (Ascaris suum) [TaxId: 6253]

 Score = 66.5 bits (162), Expect = 2e-12
 Identities = 29/83 (34%), Positives = 49/83 (59%), Gaps = 2/83 (2%)

Query: 142 ASLGIADLCVMAMQKEGTSEQDARDKIWMVDSKGLIVKDRPEGGVTGHKVHYAKKHAPVK 201
           AS GIA++ V  MQ EG S+++A ++I+++D  GL+ K+R E  +    V +AK      
Sbjct: 36  ASTGIAEMIVHQMQNEGISKEEACNRIYLMDIDGLVTKNRKE--MNPRHVQFAKDMPETT 93

Query: 202 NLADVVKTVKPSILIGESCVNDV 224
           ++ +V++  +P  LIG S V   
Sbjct: 94  SILEVIRAARPGALIGASTVRGA 116

>d1o0sa1 c.2.1.7 (A:296-603) Mitochondrial NAD(P)-dependent malic enzyme {Pig roundworm (Ascaris suum) [TaxId: 6253]} Length = 308

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Mitochondrial NAD(P)-dependent malic enzyme
species: Pig roundworm (Ascaris suum) [TaxId: 6253]

 Score = 61.9 bits (150), Expect = 6e-11
 Identities = 24/49 (48%), Positives = 29/49 (59%), Gaps = 2/49 (4%)

Query: 683 IQGTASVAVAGLLASLRITKTRLSDNTILFQGAGEGTASVAVAGLLASL 731
           IQGTASV VAGLL   R+TK  +S    LF GAG   AS  +A ++   
Sbjct: 1   IQGTASVIVAGLLTCTRVTKKLVSQEKYLFFGAGA--ASTGIAEMIVHQ 47

>d1o0sa1 c.2.1.7 (A:296-603) Mitochondrial NAD(P)-dependent malic enzyme {Pig roundworm (Ascaris suum) [TaxId: 6253]} Length = 308

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Mitochondrial NAD(P)-dependent malic enzyme
species: Pig roundworm (Ascaris suum) [TaxId: 6253]

 Score = 57.7 bits (139), Expect = 2e-09
 Identities = 23/47 (48%), Positives = 27/47 (57%), Gaps = 2/47 (4%)

Query: 718 GTASVAVAGLLASLRITKTRLSDNTILFQGAGEGTASVAIAGLLASL 764
           GTASV VAGLL   R+TK  +S    LF GAG   AS  IA ++   
Sbjct: 3   GTASVIVAGLLTCTRVTKKLVSQEKYLFFGAGA--ASTGIAEMIVHQ 47

>d1o0sa1 c.2.1.7 (A:296-603) Mitochondrial NAD(P)-dependent malic enzyme {Pig roundworm (Ascaris suum) [TaxId: 6253]} Length = 308

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Mitochondrial NAD(P)-dependent malic enzyme
species: Pig roundworm (Ascaris suum) [TaxId: 6253]

 Score = 51.5 bits (123), Expect = 2e-07
 Identities = 20/47 (42%), Positives = 26/47 (55%), Gaps = 2/47 (4%)

Query: 751 GTASVAIAGLLASLRITKTRLSDNTILFQGSGEGTASVAVAGVLASL 797
           GTASV +AGLL   R+TK  +S    LF   G G AS  +A ++   
Sbjct: 3   GTASVIVAGLLTCTRVTKKLVSQEKYLF--FGAGAASTGIAEMIVHQ 47

>d1o0sa1 c.2.1.7 (A:296-603) Mitochondrial NAD(P)-dependent malic enzyme {Pig roundworm (Ascaris suum) [TaxId: 6253]} Length = 308

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Mitochondrial NAD(P)-dependent malic enzyme
species: Pig roundworm (Ascaris suum) [TaxId: 6253]

 Score = 48.0 bits (114), Expect = 2e-06
 Identities = 18/33 (54%), Positives = 21/33 (63%)

Query: 784 GTASVAVAGVLASLRITKTRLSDNTILFQGAGE 816
           GTASV VAG+L   R+TK  +S    LF GAG 
Sbjct: 3   GTASVIVAGLLTCTRVTKKLVSQEKYLFFGAGA 35

>d1gq2a1 c.2.1.7 (A:280-580) Mitochondrial NAD(P)-dependent malic enzyme {Domestic pigeon (Columba livia) [TaxId: 8932]} Length = 298

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Mitochondrial NAD(P)-dependent malic enzyme
species: Domestic pigeon (Columba livia) [TaxId: 8932]

 Score = 90.8 bits (225), Expect = 1e-20
 Identities = 63/99 (63%), Positives = 77/99 (77%), Gaps = 2/99 (2%)

Query: 224 VAGLLASLRITKTRLSDNTILFQGAGEASLGIADLCVMAMQKEGTSEQDARDKIWMVDSK 283
           VAGLLA+LRITK RLSD+T+LFQGAGEA+LGIA+L VMAMQKEG S+++A  +IWMVDSK
Sbjct: 9   VAGLLAALRITKNRLSDHTVLFQGAGEAALGIANLIVMAMQKEGVSKEEAIKRIWMVDSK 68

Query: 284 GLIVKDRPEGGVTGHKVHYAKKHAPVKNLADVVKTGMAF 322
           GLIVK R    +T  K H+A +H  +KNL D+VK     
Sbjct: 69  GLIVKGRAS--LTPEKEHFAHEHCEMKNLEDIVKDIKPT 105

>d1gq2a1 c.2.1.7 (A:280-580) Mitochondrial NAD(P)-dependent malic enzyme {Domestic pigeon (Columba livia) [TaxId: 8932]} Length = 298

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Mitochondrial NAD(P)-dependent malic enzyme
species: Domestic pigeon (Columba livia) [TaxId: 8932]

 Score = 90.1 bits (223), Expect = 3e-20
 Identities = 64/99 (64%), Positives = 81/99 (81%), Gaps = 2/99 (2%)

Query: 1   LLASLRITKTRLSDNTILFQGAGEASLGIADLCVMAMQKEGTSEQDARDKIWMVDSKGLI 60
           LLA+LRITK RLSD+T+LFQGAGEA+LGIA+L VMAMQKEG S+++A  +IWMVDSKGLI
Sbjct: 12  LLAALRITKNRLSDHTVLFQGAGEAALGIANLIVMAMQKEGVSKEEAIKRIWMVDSKGLI 71

Query: 61  VKDRPEGGVTGHKVHYAKKHAPVKNLADVVKTVKPSILI 99
           VK R    +T  K H+A +H  +KNL D+VK +KP++LI
Sbjct: 72  VKGRAS--LTPEKEHFAHEHCEMKNLEDIVKDIKPTVLI 108

>d1gq2a1 c.2.1.7 (A:280-580) Mitochondrial NAD(P)-dependent malic enzyme {Domestic pigeon (Columba livia) [TaxId: 8932]} Length = 298

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Mitochondrial NAD(P)-dependent malic enzyme
species: Domestic pigeon (Columba livia) [TaxId: 8932]

 Score = 70.0 bits (171), Expect = 1e-13
 Identities = 55/73 (75%), Positives = 59/73 (80%), Gaps = 1/73 (1%)

Query: 433 AAAIPQVFTADILKDMAAFNKRPIIFALSNPTSKAECTAEQAYVNTDGRGVFASGSPFDP 492
            AAI   FT  IL+DMAAFNKRPIIFALSNPTSKAECTAEQ Y  T+GRG+FASGSPFDP
Sbjct: 110 VAAIGGAFTQQILQDMAAFNKRPIIFALSNPTSKAECTAEQLYKYTEGRGIFASGSPFDP 169

Query: 493 VTYK-GKTFTPGQ 504
           VT   G+T  PGQ
Sbjct: 170 VTLPSGQTLYPGQ 182

>d1gq2a1 c.2.1.7 (A:280-580) Mitochondrial NAD(P)-dependent malic enzyme {Domestic pigeon (Columba livia) [TaxId: 8932]} Length = 298

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Mitochondrial NAD(P)-dependent malic enzyme
species: Domestic pigeon (Columba livia) [TaxId: 8932]

 Score = 65.8 bits (160), Expect = 3e-12
 Identities = 45/83 (54%), Positives = 61/83 (73%), Gaps = 2/83 (2%)

Query: 142 ASLGIADLCVMAMQKEGTSEQDARDKIWMVDSKGLIVKDRPEGGVTGHKVHYAKKHAPVK 201
           A+LGIA+L VMAMQKEG S+++A  +IWMVDSKGLIVK R    +T  K H+A +H  +K
Sbjct: 36  AALGIANLIVMAMQKEGVSKEEAIKRIWMVDSKGLIVKGRAS--LTPEKEHFAHEHCEMK 93

Query: 202 NLADVVKTVKPSILIGESCVNDV 224
           NL D+VK +KP++LIG + +   
Sbjct: 94  NLEDIVKDIKPTVLIGVAAIGGA 116

>d1gq2a1 c.2.1.7 (A:280-580) Mitochondrial NAD(P)-dependent malic enzyme {Domestic pigeon (Columba livia) [TaxId: 8932]} Length = 298

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Mitochondrial NAD(P)-dependent malic enzyme
species: Domestic pigeon (Columba livia) [TaxId: 8932]

 Score = 61.6 bits (149), Expect = 9e-11
 Identities = 34/49 (69%), Positives = 41/49 (83%), Gaps = 2/49 (4%)

Query: 683 IQGTASVAVAGLLASLRITKTRLSDNTILFQGAGEGTASVAVAGLLASL 731
           IQGTASVAVAGLLA+LRITK RLSD+T+LFQGAGE  A++ +A L+   
Sbjct: 1   IQGTASVAVAGLLAALRITKNRLSDHTVLFQGAGE--AALGIANLIVMA 47

>d1gq2a1 c.2.1.7 (A:280-580) Mitochondrial NAD(P)-dependent malic enzyme {Domestic pigeon (Columba livia) [TaxId: 8932]} Length = 298

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Mitochondrial NAD(P)-dependent malic enzyme
species: Domestic pigeon (Columba livia) [TaxId: 8932]

 Score = 57.3 bits (138), Expect = 2e-09
 Identities = 33/48 (68%), Positives = 40/48 (83%), Gaps = 2/48 (4%)

Query: 717 EGTASVAVAGLLASLRITKTRLSDNTILFQGAGEGTASVAIAGLLASL 764
           +GTASVAVAGLLA+LRITK RLSD+T+LFQGAGE  A++ IA L+   
Sbjct: 2   QGTASVAVAGLLAALRITKNRLSDHTVLFQGAGE--AALGIANLIVMA 47

>d1gq2a1 c.2.1.7 (A:280-580) Mitochondrial NAD(P)-dependent malic enzyme {Domestic pigeon (Columba livia) [TaxId: 8932]} Length = 298

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Mitochondrial NAD(P)-dependent malic enzyme
species: Domestic pigeon (Columba livia) [TaxId: 8932]

 Score = 50.8 bits (121), Expect = 3e-07
 Identities = 27/48 (56%), Positives = 37/48 (77%), Gaps = 2/48 (4%)

Query: 750 EGTASVAIAGLLASLRITKTRLSDNTILFQGSGEGTASVAVAGVLASL 797
           +GTASVA+AGLLA+LRITK RLSD+T+LF   G G A++ +A ++   
Sbjct: 2   QGTASVAVAGLLAALRITKNRLSDHTVLF--QGAGEAALGIANLIVMA 47

>d1gq2a1 c.2.1.7 (A:280-580) Mitochondrial NAD(P)-dependent malic enzyme {Domestic pigeon (Columba livia) [TaxId: 8932]} Length = 298

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Mitochondrial NAD(P)-dependent malic enzyme
species: Domestic pigeon (Columba livia) [TaxId: 8932]

 Score = 48.1 bits (114), Expect = 2e-06
 Identities = 28/34 (82%), Positives = 33/34 (97%)

Query: 783 EGTASVAVAGVLASLRITKTRLSDNTILFQGAGE 816
           +GTASVAVAG+LA+LRITK RLSD+T+LFQGAGE
Sbjct: 2   QGTASVAVAGLLAALRITKNRLSDHTVLFQGAGE 35

>d1pj3a1 c.2.1.7 (A:280-573) Mitochondrial NAD(P)-dependent malic enzyme {Human (Homo sapiens) [TaxId: 9606]} Length = 294

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Mitochondrial NAD(P)-dependent malic enzyme
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 88.5 bits (219), Expect = 9e-20
 Identities = 41/100 (41%), Positives = 61/100 (61%), Gaps = 1/100 (1%)

Query: 1   LLASLRITKTRLSDNTILFQGAGEASLGIADLCVMAMQKEGTSEQDARDKIWMVDSKGLI 60
           LLA+ ++    +S++ ILF GAGEA+LGIA+L VM+M + G SEQ+A+ KIWM D  GL+
Sbjct: 12  LLAAQKVISKPISEHKILFLGAGEAALGIANLIVMSMVENGLSEQEAQKKIWMFDKYGLL 71

Query: 61  VKDRPEGGVTGHK-VHYAKKHAPVKNLADVVKTVKPSILI 99
           VK R     +  +   ++   +      D V  +KPS +I
Sbjct: 72  VKGRKAKIDSYQEPFTHSAPESIPDTFEDAVNILKPSTII 111

>d1pj3a1 c.2.1.7 (A:280-573) Mitochondrial NAD(P)-dependent malic enzyme {Human (Homo sapiens) [TaxId: 9606]} Length = 294

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Mitochondrial NAD(P)-dependent malic enzyme
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 87.3 bits (216), Expect = 2e-19
 Identities = 39/95 (41%), Positives = 58/95 (61%), Gaps = 1/95 (1%)

Query: 224 VAGLLASLRITKTRLSDNTILFQGAGEASLGIADLCVMAMQKEGTSEQDARDKIWMVDSK 283
           +AGLLA+ ++    +S++ ILF GAGEA+LGIA+L VM+M + G SEQ+A+ KIWM D  
Sbjct: 9   LAGLLAAQKVISKPISEHKILFLGAGEAALGIANLIVMSMVENGLSEQEAQKKIWMFDKY 68

Query: 284 GLIVKDRPEGGVTGHK-VHYAKKHAPVKNLADVVK 317
           GL+VK R     +  +   ++   +      D V 
Sbjct: 69  GLLVKGRKAKIDSYQEPFTHSAPESIPDTFEDAVN 103

>d1pj3a1 c.2.1.7 (A:280-573) Mitochondrial NAD(P)-dependent malic enzyme {Human (Homo sapiens) [TaxId: 9606]} Length = 294

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Mitochondrial NAD(P)-dependent malic enzyme
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 70.0 bits (171), Expect = 2e-13
 Identities = 43/73 (58%), Positives = 57/73 (78%), Gaps = 1/73 (1%)

Query: 433 AAAIPQVFTADILKDMAAFNKRPIIFALSNPTSKAECTAEQAYVNTDGRGVFASGSPFDP 492
            A   ++FT D+++ MA+ N+RP+IFALSNPT++AECTAE+AY  T+GR +FASGSPF P
Sbjct: 113 VAGAGRLFTPDVIRAMASINERPVIFALSNPTAQAECTAEEAYTLTEGRCLFASGSPFGP 172

Query: 493 VTYK-GKTFTPGQ 504
           V    G+ FTPGQ
Sbjct: 173 VKLTDGRVFTPGQ 185

>d1pj3a1 c.2.1.7 (A:280-573) Mitochondrial NAD(P)-dependent malic enzyme {Human (Homo sapiens) [TaxId: 9606]} Length = 294

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Mitochondrial NAD(P)-dependent malic enzyme
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 62.3 bits (151), Expect = 5e-11
 Identities = 31/84 (36%), Positives = 47/84 (55%), Gaps = 1/84 (1%)

Query: 142 ASLGIADLCVMAMQKEGTSEQDARDKIWMVDSKGLIVKDRPEGGVTGHK-VHYAKKHAPV 200
           A+LGIA+L VM+M + G SEQ+A+ KIWM D  GL+VK R     +  +   ++   +  
Sbjct: 36  AALGIANLIVMSMVENGLSEQEAQKKIWMFDKYGLLVKGRKAKIDSYQEPFTHSAPESIP 95

Query: 201 KNLADVVKTVKPSILIGESCVNDV 224
               D V  +KPS +IG +    +
Sbjct: 96  DTFEDAVNILKPSTIIGVAGAGRL 119

>d1pj3a1 c.2.1.7 (A:280-573) Mitochondrial NAD(P)-dependent malic enzyme {Human (Homo sapiens) [TaxId: 9606]} Length = 294

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Mitochondrial NAD(P)-dependent malic enzyme
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 61.2 bits (148), Expect = 1e-10
 Identities = 23/49 (46%), Positives = 35/49 (71%), Gaps = 2/49 (4%)

Query: 683 IQGTASVAVAGLLASLRITKTRLSDNTILFQGAGEGTASVAVAGLLASL 731
           IQGTA+VA+AGLLA+ ++    +S++ ILF GAGE  A++ +A L+   
Sbjct: 1   IQGTAAVALAGLLAAQKVISKPISEHKILFLGAGE--AALGIANLIVMS 47

>d1pj3a1 c.2.1.7 (A:280-573) Mitochondrial NAD(P)-dependent malic enzyme {Human (Homo sapiens) [TaxId: 9606]} Length = 294

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Mitochondrial NAD(P)-dependent malic enzyme
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 57.3 bits (138), Expect = 2e-09
 Identities = 22/47 (46%), Positives = 33/47 (70%), Gaps = 2/47 (4%)

Query: 718 GTASVAVAGLLASLRITKTRLSDNTILFQGAGEGTASVAIAGLLASL 764
           GTA+VA+AGLLA+ ++    +S++ ILF GAGE  A++ IA L+   
Sbjct: 3   GTAAVALAGLLAAQKVISKPISEHKILFLGAGE--AALGIANLIVMS 47

>d1pj3a1 c.2.1.7 (A:280-573) Mitochondrial NAD(P)-dependent malic enzyme {Human (Homo sapiens) [TaxId: 9606]} Length = 294

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Mitochondrial NAD(P)-dependent malic enzyme
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 51.1 bits (122), Expect = 2e-07
 Identities = 18/47 (38%), Positives = 31/47 (65%), Gaps = 2/47 (4%)

Query: 751 GTASVAIAGLLASLRITKTRLSDNTILFQGSGEGTASVAVAGVLASL 797
           GTA+VA+AGLLA+ ++    +S++ ILF   G G A++ +A ++   
Sbjct: 3   GTAAVALAGLLAAQKVISKPISEHKILF--LGAGEAALGIANLIVMS 47

>d1pj3a1 c.2.1.7 (A:280-573) Mitochondrial NAD(P)-dependent malic enzyme {Human (Homo sapiens) [TaxId: 9606]} Length = 294

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Mitochondrial NAD(P)-dependent malic enzyme
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 48.4 bits (115), Expect = 2e-06
 Identities = 17/33 (51%), Positives = 26/33 (78%)

Query: 784 GTASVAVAGVLASLRITKTRLSDNTILFQGAGE 816
           GTA+VA+AG+LA+ ++    +S++ ILF GAGE
Sbjct: 3   GTAAVALAGLLAAQKVISKPISEHKILFLGAGE 35

>d1vl6a1 c.2.1.7 (A:155-376) Malate oxidoreductase (malic enzyme) {Thermotoga maritima [TaxId: 2336]} Length = 222

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Malate oxidoreductase (malic enzyme)
species: Thermotoga maritima [TaxId: 2336]

 Score = 68.6 bits (167), Expect = 2e-13
 Identities = 18/93 (19%), Positives = 39/93 (41%), Gaps = 10/93 (10%)

Query: 224 VAGLLASLRITKTRLSDNTILFQGAGEASLGIADLCVMAMQKEGTSEQDARDKIWMVDSK 283
            A  L +L++T+ ++ +  ++  G G A   I    +    K           +  VD K
Sbjct: 10  SAAFLNALKLTEKKIEEVKVVVNGIGAAGYNIVKFLLDLGVK----------NVVAVDRK 59

Query: 284 GLIVKDRPEGGVTGHKVHYAKKHAPVKNLADVV 316
           G++ ++ PE  +  + +  A+   P +   D+ 
Sbjct: 60  GILNENDPETCLNEYHLEIARITNPERLSGDLE 92

>d1vl6a1 c.2.1.7 (A:155-376) Malate oxidoreductase (malic enzyme) {Thermotoga maritima [TaxId: 2336]} Length = 222

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Malate oxidoreductase (malic enzyme)
species: Thermotoga maritima [TaxId: 2336]

 Score = 65.1 bits (158), Expect = 2e-12
 Identities = 17/99 (17%), Positives = 41/99 (41%), Gaps = 10/99 (10%)

Query: 1   LLASLRITKTRLSDNTILFQGAGEASLGIADLCVMAMQKEGTSEQDARDKIWMVDSKGLI 60
            L +L++T+ ++ +  ++  G G A   I    +    K           +  VD KG++
Sbjct: 13  FLNALKLTEKKIEEVKVVVNGIGAAGYNIVKFLLDLGVK----------NVVAVDRKGIL 62

Query: 61  VKDRPEGGVTGHKVHYAKKHAPVKNLADVVKTVKPSILI 99
            ++ PE  +  + +  A+   P +   D+   ++ +   
Sbjct: 63  NENDPETCLNEYHLEIARITNPERLSGDLETALEGADFF 101

>d1vl6a1 c.2.1.7 (A:155-376) Malate oxidoreductase (malic enzyme) {Thermotoga maritima [TaxId: 2336]} Length = 222

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Malate oxidoreductase (malic enzyme)
species: Thermotoga maritima [TaxId: 2336]

 Score = 61.2 bits (148), Expect = 4e-11
 Identities = 16/64 (25%), Positives = 28/64 (43%), Gaps = 2/64 (3%)

Query: 682 DIQGTASVAVAGLLASLRITKTRLSDNTILFQGAGEGTASVAVAGLLASLRITKTRLSDN 741
           D QGTA V  A  L +L++T+ ++ +  ++  G G   A   +   L  L +      D 
Sbjct: 1   DQQGTAVVVSAAFLNALKLTEKKIEEVKVVVNGIGA--AGYNIVKFLLDLGVKNVVAVDR 58

Query: 742 TILF 745
             + 
Sbjct: 59  KGIL 62

>d1vl6a1 c.2.1.7 (A:155-376) Malate oxidoreductase (malic enzyme) {Thermotoga maritima [TaxId: 2336]} Length = 222

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Malate oxidoreductase (malic enzyme)
species: Thermotoga maritima [TaxId: 2336]

 Score = 55.1 bits (132), Expect = 5e-09
 Identities = 15/61 (24%), Positives = 26/61 (42%), Gaps = 2/61 (3%)

Query: 718 GTASVAVAGLLASLRITKTRLSDNTILFQGAGEGTASVAIAGLLASLRITKTRLSDNTIL 777
           GTA V  A  L +L++T+ ++ +  ++  G G   A   I   L  L +      D   +
Sbjct: 4   GTAVVVSAAFLNALKLTEKKIEEVKVVVNGIGA--AGYNIVKFLLDLGVKNVVAVDRKGI 61

Query: 778 F 778
            
Sbjct: 62  L 62

>d1vl6a1 c.2.1.7 (A:155-376) Malate oxidoreductase (malic enzyme) {Thermotoga maritima [TaxId: 2336]} Length = 222

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Malate oxidoreductase (malic enzyme)
species: Thermotoga maritima [TaxId: 2336]

 Score = 49.7 bits (118), Expect = 3e-07
 Identities = 14/61 (22%), Positives = 27/61 (44%), Gaps = 2/61 (3%)

Query: 751 GTASVAIAGLLASLRITKTRLSDNTILFQGSGEGTASVAVAGVLASLRITKTRLSDNTIL 810
           GTA V  A  L +L++T+ ++ +  ++   +G G A   +   L  L +      D   +
Sbjct: 4   GTAVVVSAAFLNALKLTEKKIEEVKVVV--NGIGAAGYNIVKFLLDLGVKNVVAVDRKGI 61

Query: 811 F 811
            
Sbjct: 62  L 62

>d1vl6a1 c.2.1.7 (A:155-376) Malate oxidoreductase (malic enzyme) {Thermotoga maritima [TaxId: 2336]} Length = 222

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Malate oxidoreductase (malic enzyme)
species: Thermotoga maritima [TaxId: 2336]

 Score = 49.3 bits (117), Expect = 4e-07
 Identities = 10/33 (30%), Positives = 19/33 (57%)

Query: 784 GTASVAVAGVLASLRITKTRLSDNTILFQGAGE 816
           GTA V  A  L +L++T+ ++ +  ++  G G 
Sbjct: 4   GTAVVVSAAFLNALKLTEKKIEEVKVVVNGIGA 36

>d1vl6a1 c.2.1.7 (A:155-376) Malate oxidoreductase (malic enzyme) {Thermotoga maritima [TaxId: 2336]} Length = 222

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Malate oxidoreductase (malic enzyme)
species: Thermotoga maritima [TaxId: 2336]

 Score = 40.8 bits (95), Expect = 3e-04
 Identities = 19/91 (20%), Positives = 35/91 (38%), Gaps = 6/91 (6%)

Query: 415 KPHQCLPITLDVGTNWRRAAAIPQVFTADIL--KDMAAFNKRPIIFALSNPTSKAECTAE 472
           +      ++ D+ T    A     V   +IL  + +   +++P+IFAL+NP  + +    
Sbjct: 80  RITNPERLSGDLETALEGADFFIGVSRGNILKPEWIKKMSRKPVIFALANPVPEIDPE-- 137

Query: 473 QAYVNTDGRGVFASGSPFDPVTYKGKTFTPG 503
                  G  + A+G    P         PG
Sbjct: 138 --LAREAGAFIVATGRSDHPNQVNNLLAFPG 166

>d1vl6a2 c.58.1.3 (A:1-154) Malate oxidoreductase (malic enzyme) {Thermotoga maritima [TaxId: 2336]} Length = 154

class: Alpha and beta proteins (a/b)
fold: Aminoacid dehydrogenase-like, N-terminal domain
superfamily: Aminoacid dehydrogenase-like, N-terminal domain
family: Malic enzyme N-domain
domain: Malate oxidoreductase (malic enzyme)
species: Thermotoga maritima [TaxId: 2336]

 Score = 40.5 bits (95), Expect = 2e-04
 Identities = 40/173 (23%), Positives = 56/173 (32%), Gaps = 52/173 (30%)

Query: 513 IVYTPTVGLACQKYGLIFRRPRGLFISIHDKGHISEVLRNWPETDIRAIVVTDGERILGL 572
           ++YTP V    +        P        +K ++     N         VV+DG  +LGL
Sbjct: 30  LLYTPGVADVARA---CAEDP--------EKTYVYTSRWNT------VAVVSDGSAVLGL 72

Query: 573 GDLGAYGMGIPV--GKLSLYTALAGIKPHQCLPITLDVGTNTQQLLDDPLYIGLRQRRTT 630
           G++G YG  +PV  GK  L+ A A I      PI L                        
Sbjct: 73  GNIGPYG-ALPVMEGKAFLFKAFADID---AFPICLSE---------------------- 106

Query: 631 GQAYDDFIEEFMQAVVARYGQHVLIQFEDFANHSAFRFLDTYRNRY--CVFND 681
                   E+ +  V +       I  ED      FR L          VF+D
Sbjct: 107 -----SEEEKIISIVKSLEPSFGGINLEDIGAPKCFRILQRLSEEMNIPVFHD 154

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	848
d1gq2a2	257	Mitochondrial NAD(P)-dependent malic enzyme {Domes	100.0
d1pj3a2	259	Mitochondrial NAD(P)-dependent malic enzyme {Human	100.0
d1o0sa2	294	Mitochondrial NAD(P)-dependent malic enzyme {Pig r	100.0
d1gq2a1	298	Mitochondrial NAD(P)-dependent malic enzyme {Domes	100.0
d1o0sa1	308	Mitochondrial NAD(P)-dependent malic enzyme {Pig r	100.0
d1pj3a1	294	Mitochondrial NAD(P)-dependent malic enzyme {Human	100.0
d1vl6a1	222	Malate oxidoreductase (malic enzyme) {Thermotoga m	100.0
d1gq2a1	298	Mitochondrial NAD(P)-dependent malic enzyme {Domes	100.0
d1o0sa1	308	Mitochondrial NAD(P)-dependent malic enzyme {Pig r	100.0
d1pj3a1	294	Mitochondrial NAD(P)-dependent malic enzyme {Human	100.0
d1vl6a1	222	Malate oxidoreductase (malic enzyme) {Thermotoga m	100.0
d1vl6a2	154	Malate oxidoreductase (malic enzyme) {Thermotoga m	99.95
d1gq2a2	257	Mitochondrial NAD(P)-dependent malic enzyme {Domes	99.45
d1pj3a2	259	Mitochondrial NAD(P)-dependent malic enzyme {Human	99.4
d1o0sa2	294	Mitochondrial NAD(P)-dependent malic enzyme {Pig r	99.4
d1vl6a2	154	Malate oxidoreductase (malic enzyme) {Thermotoga m	99.2
d1gpja2	159	Glutamyl tRNA-reductase middle domain {Archaeon Me	96.12
d1vi2a1	182	Putative shikimate dehydrogenase YdiB {Escherichia	95.01
d1gpja2	159	Glutamyl tRNA-reductase middle domain {Archaeon Me	94.77
d1pjca1	168	L-alanine dehydrogenase {Phormidium lapideum [TaxI	94.21
d1b5qa1	347	Polyamine oxidase {Maize (Zea mays) [TaxId: 4577]}	93.6
d1seza1	373	Protoporphyrinogen oxidase {Tobacco (Nicotiana tab	92.9
d1b26a1	234	Glutamate dehydrogenase {Thermotoga maritima [TaxI	92.57
d1nyta1	170	Shikimate 5-dehydrogenase AroE {Escherichia coli [	92.43
d1gtea4	196	Dihydropyrimidine dehydrogenase, domain 2 {Pig (Su	91.93
d2dw4a2	449	Lysine-specific histone demethylase 1, LSD1 {Human	91.74
d1cjca2	230	Adrenodoxin reductase of mitochondrial p450 system	91.61
d1npya1	167	Shikimate 5-dehydrogenase-like protein HI0607 {Hae	91.35
d1p77a1	171	Shikimate 5-dehydrogenase AroE {Haemophilus influe	90.9
d2iida1	370	L-aminoacid oxidase {Malayan pit viper (Calloselas	90.64
d2voua1	265	Dihydroxypyridine hydroxylase DhpH {Arthrobacter n	90.52
d1vi2a1	182	Putative shikimate dehydrogenase YdiB {Escherichia	90.47
d1c0pa1	268	D-aminoacid oxidase, N-terminal domain {Rhodotorul	90.32
d2ivda1	347	Protoporphyrinogen oxidase {Myxococcus xanthus [Ta	90.26
d2jfga1	93	UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase	90.22
d1l7da1	183	Nicotinamide nucleotide transhydrogenase dI compon	89.85
d2gv8a1	335	Flavin-dependent monoxygenase SPBP16F5.08c {Schizo	89.58
d1fcda1	186	Flavocytochrome c sulfide dehydrogenase, FCSD, fla	89.34
d1nvta1	177	Shikimate 5-dehydrogenase AroE {Archaeon Methanoco	88.8
d2bcgg1	297	Guanine nucleotide dissociation inhibitor, GDI {Ba	88.77
d2jfga1	93	UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase	88.75
d1b5qa1	347	Polyamine oxidase {Maize (Zea mays) [TaxId: 4577]}	88.35
d1lqta2	239	Ferredoxin:NADP reductase FprA {Mycobacterium tube	88.35
d1w4xa1	298	Phenylacetone monooxygenase {Thermobifida fusca [T	88.32
d3c96a1	288	Monooxygenase PhzS {Pseudomonas aeruginosa [TaxId:	88.01
d2bi7a1	314	UDP-galactopyranose mutase, N-terminal domain {Kle	87.89
d1v9la1	242	Glutamate dehydrogenase {Pyrobaculum islandicum [T	87.54
d1c0pa1	268	D-aminoacid oxidase, N-terminal domain {Rhodotorul	86.7
d1djqa3	233	Trimethylamine dehydrogenase, middle domain {Methy	86.66
d1luaa1	191	Methylene-tetrahydromethanopterin dehydrogenase {M	85.92
d1d5ta1	336	Guanine nucleotide dissociation inhibitor, GDI {Co	85.83
d1bgva1	255	Glutamate dehydrogenase {Clostridium symbiosum [Ta	85.67
d1nyta1	170	Shikimate 5-dehydrogenase AroE {Escherichia coli [	85.56
d1bgva1	255	Glutamate dehydrogenase {Clostridium symbiosum [Ta	85.3
d1jw9b_	247	Molybdenum cofactor biosynthesis protein MoeB {Esc	84.77
d1nhpa1	198	NADH peroxidase {Enterococcus faecalis [TaxId: 135	84.63
d1i8ta1	298	UDP-galactopyranose mutase, N-terminal domain {Esc	84.54
d1gtea4	196	Dihydropyrimidine dehydrogenase, domain 2 {Pig (Su	84.16
d1bg6a2	184	N-(1-D-carboxylethyl)-L-norvaline dehydrogenase {A	83.88
d2v5za1	383	Monoamine oxidase B {Human (Homo sapiens) [TaxId:	83.87
d1fcda1	186	Flavocytochrome c sulfide dehydrogenase, FCSD, fla	83.43
d1seza1	373	Protoporphyrinogen oxidase {Tobacco (Nicotiana tab	83.3
d1v9la1	242	Glutamate dehydrogenase {Pyrobaculum islandicum [T	83.03
d1npya1	167	Shikimate 5-dehydrogenase-like protein HI0607 {Hae	82.55
d2naca1	188	Formate dehydrogenase {Pseudomonas sp., strain 101	82.38
d2iida1	370	L-aminoacid oxidase {Malayan pit viper (Calloselas	81.79
d1c1da1	201	Phenylalanine dehydrogenase {Rhodococcus sp., M4 [	81.72
d1dxla1	221	Dihydrolipoamide dehydrogenase {Garden pea (Pisum	81.59
d1feca2	117	Trypanothione reductase {Crithidia fasciculata [Ta	80.84
d1hwxa1	293	Glutamate dehydrogenase {Cow (Bos taurus) [TaxId:	80.73
d1ps9a3	179	2,4-dienoyl-CoA reductase, middle domain {Escheric	80.67
d1kifa1	246	D-aminoacid oxidase, N-terminal domain {Pig (Sus s	80.47
d1pjca1	168	L-alanine dehydrogenase {Phormidium lapideum [TaxI	80.36
d1pj5a2	305	N,N-dimethylglycine oxidase {Arthrobacter globifor	80.06
d1jw9b_	247	Molybdenum cofactor biosynthesis protein MoeB {Esc	80.06

>d1gq2a2 c.58.1.3 (A:23-279) Mitochondrial NAD(P)-dependent malic enzyme {Domestic pigeon (Columba livia) [TaxId: 8932]}

class: Alpha and beta proteins (a/b)
fold: Aminoacid dehydrogenase-like, N-terminal domain
superfamily: Aminoacid dehydrogenase-like, N-terminal domain
family: Malic enzyme N-domain
domain: Mitochondrial NAD(P)-dependent malic enzyme
species: Domestic pigeon (Columba livia) [TaxId: 8932]

Probab=100.00  E-value=4.8e-88  Score=695.37  Aligned_cols=254  Identities=62%  Similarity=1.093  Sum_probs=246.7

Q ss_pred             Ccchhhh-hhhccccccHHHHhhhcccccCcccccchhHHHHHhhccccccCCChhhHHHHHHhhcccceeEEEeccCce
Q psy14377        308 PVKNLAD-VVKTGMAFSIEERQALGIHGLLPAAVKSQDEQLHLCKLNVDRYEDPLNKYIYLQALAVKTDIRAIVVTDGER  386 (848)
Q Consensus       308 ~~~~l~~-~~n~g~~~~~~er~~~~~~G~~p~~v~~~~~q~~~~~~~~~~~~~~~~~~~~L~~l~~~~~~~~~~~~d~~~  386 (848)
                      +.+.|++ .+|||++||.+||+++|++|+||++|+|+|+|++||+.++++++++++||+||.+|+++          |++
T Consensus         3 G~~lL~~p~~NKGtAFt~~ER~~l~l~GLLP~~v~tle~Qv~r~~~~~~~~~~~l~Ky~yL~~L~~~----------Ne~   72 (257)
T d1gq2a2           3 GYEVLRDPHLNKGMAFTLEERQQLNIHGLLPPCFLGQDAQVYSILKNFERLTSDLDRYILLMSLQDR----------NEK   72 (257)
T ss_dssp             TTHHHHCTTTCCGGGSCHHHHHHTTCTTSSCSCBCCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH----------CHH
T ss_pred             hHHHhcCCCccCccCCCHHHHHHcCCccCCCCCccCHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHh----------ChH
Confidence            4556666 78999999999999999999999999999999999999999999999999999999998          776


Q ss_pred             ecccccCCCCCCCcccccccHHHHHcCCCcCccCceeeEEccccccccCCCCCCCHHHHHHHHhcCCCceEEecCCCCCc
Q psy14377        387 ILGLGDLGAYGMGIPVGKLSLYTALAGIKPHQCLPITLDVGTNWRRAAAIPQVFTADILKDMAAFNKRPIIFALSNPTSK  466 (848)
Q Consensus       387 l~g~~~~g~~~~~~~~g~~~L~~al~g~kP~~~~~~~v~iG~~~~~~S~~~g~FTeevvk~Ma~~~~rPIIFaLSNPt~~  466 (848)
                      |                                                                               
T Consensus        73 L-------------------------------------------------------------------------------   73 (257)
T d1gq2a2          73 L-------------------------------------------------------------------------------   73 (257)
T ss_dssp             H-------------------------------------------------------------------------------
T ss_pred             H-------------------------------------------------------------------------------
Confidence            6                                                                               


Q ss_pred             cCCCHHHHhccCCCcEEEEeCCCCCCcccCCeEEecccchhhccCCeEecchhhhHHHhhccccccCccceeeccCcccH
Q psy14377        467 AECTAEQAYVNTDGRGVFASGSPFDPVTYKGKTFTPGQEYVVELMPIVYTPTVGLACQKYGLIFRRPRGLFISIHDKGHI  546 (848)
Q Consensus       467 ~E~tpe~a~~~T~G~ai~AtGsPf~pv~y~g~~~~~~q~nn~e~lPvvYTPGVG~acl~~~~i~r~p~gm~L~~~d~g~i  546 (848)
                                                 ||+     ..+.|..++||++||||||++|+.|+++|+.|+|||+|++|+|+|
T Consensus        74 ---------------------------FY~-----ll~~~~~e~~PivYTPTVG~Ac~~ys~~yr~prGlyis~~d~g~i  121 (257)
T d1gq2a2          74 ---------------------------FYK-----VLTSDIERFMPIVYTPTVGLACQHYGLAFRRPRGLFITIHDRGHI  121 (257)
T ss_dssp             ---------------------------HHH-----HHHHTHHHHHHHHSTTHHHHHHHTHHHHCSSCCSEEEEGGGTTCH
T ss_pred             ---------------------------HHH-----HHHHHHHHhcCcccCccHHHHHHHHhhhhccccceeeccCChHHH
Confidence                                       666     888999999999999999999999999999999999999999999


Q ss_pred             HHHHhcCCCCCccEEEEecCceeeccCCCCCCCCCccccceeeeeecCCCCCCceeeEEeeccCCcccccCCcccccccc
Q psy14377        547 SEVLRNWPETDIRAIVVTDGERILGLGDLGAYGMGIPVGKLSLYTALAGIKPHQCLPITLDVGTNTQQLLDDPLYIGLRQ  626 (848)
Q Consensus       547 ~eiL~Nwp~~d~~viVVTDG~rILGLGDlG~~gmgIpvGKl~Ly~a~aGI~p~~~LPv~LDvGTnn~~ll~Dp~y~g~r~  626 (848)
                      +++|+|||.++|++||||||+|||||||+|+|||+||+||++|||+||||||++|||||||||||||+||+||+|+|+||
T Consensus       122 ~~il~nwp~~~V~~iVVTDG~rILGlGD~G~~Gm~I~~gKl~lyta~~Gi~P~~~LPv~LDvGTnNe~LL~DP~YlG~R~  201 (257)
T d1gq2a2         122 ATMLQSWPESVIKAIVVTDGERILGLGDLGCYGMGIPVGKLALYTACGGVKPHQCLPVMLDVGTDNETLLKDPLYIGLRH  201 (257)
T ss_dssp             HHHHHTSSCSCCCEEEEECSSSCGGGCCCGGGGGHHHHHHHHHHHHTTCCCGGGEEEEEEESCCCCHHHHHCTTCCSCSS
T ss_pred             HHHHHhCCCCCeeEEEEecCceeeecCCcCcCccchhhhHHHHHHHhcCCCHhhcCCeeecCCCChHHHhcCcccccccC
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             cCCCCcchhHHHHHHHHHHHHhhCCceeeeeecCCCcchHHHHHHHcccCceeccC
Q psy14377        627 RRTTGQAYDDFIEEFMQAVVARYGQHVLIQFEDFANHSAFRFLDTYRNRYCVFNDD  682 (848)
Q Consensus       627 ~R~~g~~y~~fvdefv~av~~~fGp~~~IqfEDf~~~naf~lL~ryr~~~~~FnDD  682 (848)
                      +|++|++|++||||||+|++++|||+++||||||+++|||++|+|||+++||||||
T Consensus       202 ~R~~g~eY~~fvdefv~av~~~~p~~~~i~~EDf~~~na~~~L~~yr~~~~~FNDD  257 (257)
T d1gq2a2         202 KRIRGQAYDDLLDEFMEAVTSRYGMNCLIQFEDFANANAFRLLHKYRNKYCTFNDD  257 (257)
T ss_dssp             CCCCTHHHHHHHHHHHHHHHHHHCTTCEEEECSCCHHHHHHHHHHHTTTSEEEETT
T ss_pred             CCCcchHHHHHHHHHHHHHHHhCCCCCEEehhhcCCchHHHHHHHHccCCCccCCC
Confidence            99999999999999999999999889999999999999999999999999999999

>d1pj3a2 c.58.1.3 (A:21-279) Mitochondrial NAD(P)-dependent malic enzyme {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Aminoacid dehydrogenase-like, N-terminal domain
superfamily: Aminoacid dehydrogenase-like, N-terminal domain
family: Malic enzyme N-domain
domain: Mitochondrial NAD(P)-dependent malic enzyme
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=9.3e-88  Score=693.87  Aligned_cols=255  Identities=56%  Similarity=1.057  Sum_probs=247.8

Q ss_pred             CCcchhhh-hhhccccccHHHHhhhcccccCcccccchhHHHHHhhccccccCCChhhHHHHHHhhcccceeEEEeccCc
Q psy14377        307 APVKNLAD-VVKTGMAFSIEERQALGIHGLLPAAVKSQDEQLHLCKLNVDRYEDPLNKYIYLQALAVKTDIRAIVVTDGE  385 (848)
Q Consensus       307 ~~~~~l~~-~~n~g~~~~~~er~~~~~~G~~p~~v~~~~~q~~~~~~~~~~~~~~~~~~~~L~~l~~~~~~~~~~~~d~~  385 (848)
                      ++.+.|.+ .+|||++||.+||+++|++|+||++|+|+|+|++||+.++++.+++++||+||.+++++          |+
T Consensus         4 rG~~lL~~p~~NKGtAFt~~ER~~l~l~GLLP~~v~tle~Qv~r~~~~~~~~~t~l~Ky~yL~~L~~~----------Ne   73 (259)
T d1pj3a2           4 KGKPLMLNPRTNKGMAFTLQERQMLGLQGLLPPKIETQDIQALRFHRNLKKMTSPLEKYIYIMGIQER----------NE   73 (259)
T ss_dssp             CSTHHHHSTTTCCGGGSCHHHHHHTTCTTTSCSCCCCHHHHHHHHHHHHHHCCSHHHHHHHHHHHHTT----------CH
T ss_pred             hHHHHhcCCCccCcCCCCHHHHHHcCCccCCCCCccCHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHh----------cH
Confidence            45667777 88999999999999999999999999999999999999999999999999999999998          77


Q ss_pred             eecccccCCCCCCCcccccccHHHHHcCCCcCccCceeeEEccccccccCCCCCCCHHHHHHHHhcCCCceEEecCCCCC
Q psy14377        386 RILGLGDLGAYGMGIPVGKLSLYTALAGIKPHQCLPITLDVGTNWRRAAAIPQVFTADILKDMAAFNKRPIIFALSNPTS  465 (848)
Q Consensus       386 ~l~g~~~~g~~~~~~~~g~~~L~~al~g~kP~~~~~~~v~iG~~~~~~S~~~g~FTeevvk~Ma~~~~rPIIFaLSNPt~  465 (848)
                      +|                                                                              
T Consensus        74 ~L------------------------------------------------------------------------------   75 (259)
T d1pj3a2          74 KL------------------------------------------------------------------------------   75 (259)
T ss_dssp             HH------------------------------------------------------------------------------
T ss_pred             HH------------------------------------------------------------------------------
Confidence            66                                                                              


Q ss_pred             ccCCCHHHHhccCCCcEEEEeCCCCCCcccCCeEEecccchhhccCCeEecchhhhHHHhhccccccCccceeeccCccc
Q psy14377        466 KAECTAEQAYVNTDGRGVFASGSPFDPVTYKGKTFTPGQEYVVELMPIVYTPTVGLACQKYGLIFRRPRGLFISIHDKGH  545 (848)
Q Consensus       466 ~~E~tpe~a~~~T~G~ai~AtGsPf~pv~y~g~~~~~~q~nn~e~lPvvYTPGVG~acl~~~~i~r~p~gm~L~~~d~g~  545 (848)
                                                  ||+     ..+.|..++||++||||||++|+.|+++|++|+|||+|++|+|+
T Consensus        76 ----------------------------FY~-----ll~~~~~e~mPIvYTPTVg~Ac~~ys~~~r~prGlyis~~d~g~  122 (259)
T d1pj3a2          76 ----------------------------FYR-----ILQDDIESLMPIVYTPTVGLACSQYGHIFRRPKGLFISISDRGH  122 (259)
T ss_dssp             ----------------------------HHH-----HHHHCHHHHHHHHSTTHHHHHHHTHHHHCSSCCSEEEEGGGTTC
T ss_pred             ----------------------------HHH-----HHHHHHHHhCCeecCCchHHHHHHHHHhhcCccceEecccchhH
Confidence                                        565     78899999999999999999999999999999999999999999


Q ss_pred             HHHHHhcCCCCCccEEEEecCceeeccCCCCCCCCCccccceeeeeecCCCCCCceeeEEeeccCCcccccCCccccccc
Q psy14377        546 ISEVLRNWPETDIRAIVVTDGERILGLGDLGAYGMGIPVGKLSLYTALAGIKPHQCLPITLDVGTNTQQLLDDPLYIGLR  625 (848)
Q Consensus       546 i~eiL~Nwp~~d~~viVVTDG~rILGLGDlG~~gmgIpvGKl~Ly~a~aGI~p~~~LPv~LDvGTnn~~ll~Dp~y~g~r  625 (848)
                      +.++|+|||.++|++||||||+|||||||+|++||+||+||++|||+||||||++|||||||||||||+||+||+|+|+|
T Consensus       123 i~~il~nwp~~~v~~ivVTDG~rILGlGDlG~~Gm~I~~gKl~lyta~~Gi~P~~~lPv~lDvGTnNe~LL~DP~YlG~R  202 (259)
T d1pj3a2         123 VRSIVDNWPENHVKAVVVTDGERILGLGDLGVYGMGIPVGKLCLYTACAGIRPDRCLPVCIDVGTDNIALLKDPFYMGLY  202 (259)
T ss_dssp             HHHHHTTCSCSCCCEEEEECSSSCTTSCCCGGGGGHHHHHHHHHHHHHHCCCGGGEEEEEEESCCCCTTGGGCTTCCSCS
T ss_pred             HHHHHHhCCccCceEEEEecCceeecccccCcchhhHHHhHHHHHHHcCCCChhhccceEEecCCcHHHHhcCccccccc
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             ccCCCCcchhHHHHHHHHHHHHhhCCceeeeeecCCCcchHHHHHHHcccCceeccC
Q psy14377        626 QRRTTGQAYDDFIEEFMQAVVARYGQHVLIQFEDFANHSAFRFLDTYRNRYCVFNDD  682 (848)
Q Consensus       626 ~~R~~g~~y~~fvdefv~av~~~fGp~~~IqfEDf~~~naf~lL~ryr~~~~~FnDD  682 (848)
                      |+|++|++|++||||||+|++++|||+++||||||+++|||++|+|||+++||||||
T Consensus       203 ~~R~~g~~Yd~fidefv~av~~~~gp~~li~~EDf~~~na~~~L~~yr~~~~~fNDD  259 (259)
T d1pj3a2         203 QKRDRTQQYDDLIDEFMKAITDRYGRNTLIQFEDFGNHNAFRFLRKYREKYCTFNDD  259 (259)
T ss_dssp             SCCCCSHHHHHHHHHHHHHHHHHHCTTCEEEECSCCHHHHHHHHHHHTTTSSEEEHH
T ss_pred             CCCCcchHHHHHHHHHHHHHHHhcCCCcEEehhhcCCchHHHHHHHhccCCCccCCC
Confidence            999999999999999999999999999999999999999999999999999999998

>d1o0sa2 c.58.1.3 (A:2-295) Mitochondrial NAD(P)-dependent malic enzyme {Pig roundworm (Ascaris suum) [TaxId: 6253]}

class: Alpha and beta proteins (a/b)
fold: Aminoacid dehydrogenase-like, N-terminal domain
superfamily: Aminoacid dehydrogenase-like, N-terminal domain
family: Malic enzyme N-domain
domain: Mitochondrial NAD(P)-dependent malic enzyme
species: Pig roundworm (Ascaris suum) [TaxId: 6253]

Probab=100.00  E-value=9.6e-87  Score=694.66  Aligned_cols=255  Identities=55%  Similarity=0.995  Sum_probs=248.4

Q ss_pred             CCcchhhh-hhhccccccHHHHhhhcccccCcccccchhHHHHHhhccccccCCChhhHHHHHHhhcccceeEEEeccCc
Q psy14377        307 APVKNLAD-VVKTGMAFSIEERQALGIHGLLPAAVKSQDEQLHLCKLNVDRYEDPLNKYIYLQALAVKTDIRAIVVTDGE  385 (848)
Q Consensus       307 ~~~~~l~~-~~n~g~~~~~~er~~~~~~G~~p~~v~~~~~q~~~~~~~~~~~~~~~~~~~~L~~l~~~~~~~~~~~~d~~  385 (848)
                      ++.+.|++ .+|||++||.+||+++|++|+||++|+|+|+|++||+.++.+++++++||+||.+|+++          |+
T Consensus        37 rG~~lL~~p~lNKGtAFt~~ER~~l~L~GLLP~~v~tle~Qv~R~~~~~~~~~t~l~Ky~~L~~L~~~----------Ne  106 (294)
T d1o0sa2          37 RSAELLKEPRLNKGMGFSLYERQYLGLHGLLPPAFMTQEQQAYRVITKLREQPNDLARYIQLDGLQDR----------NE  106 (294)
T ss_dssp             CHHHHHTCTTTCCGGGSCHHHHHHTTCTTTSCSCCCCHHHHHHHHHHHHHHSSSHHHHHHHHHHHHHH----------CH
T ss_pred             cHHHHhcCCcccCccCCCHHHHHHcCCccCCCCCccCHHHHHHHHHHHHhccCCcHHHHHHHHHHHHh----------Cc
Confidence            46677888 89999999999999999999999999999999999999999999999999999999998          77


Q ss_pred             eecccccCCCCCCCcccccccHHHHHcCCCcCccCceeeEEccccccccCCCCCCCHHHHHHHHhcCCCceEEecCCCCC
Q psy14377        386 RILGLGDLGAYGMGIPVGKLSLYTALAGIKPHQCLPITLDVGTNWRRAAAIPQVFTADILKDMAAFNKRPIIFALSNPTS  465 (848)
Q Consensus       386 ~l~g~~~~g~~~~~~~~g~~~L~~al~g~kP~~~~~~~v~iG~~~~~~S~~~g~FTeevvk~Ma~~~~rPIIFaLSNPt~  465 (848)
                      +|                                                                              
T Consensus       107 ~L------------------------------------------------------------------------------  108 (294)
T d1o0sa2         107 KL------------------------------------------------------------------------------  108 (294)
T ss_dssp             HH------------------------------------------------------------------------------
T ss_pred             hh------------------------------------------------------------------------------
Confidence            66                                                                              


Q ss_pred             ccCCCHHHHhccCCCcEEEEeCCCCCCcccCCeEEecccchhhccCCeEecchhhhHHHhhccccccCccceeeccCc--
Q psy14377        466 KAECTAEQAYVNTDGRGVFASGSPFDPVTYKGKTFTPGQEYVVELMPIVYTPTVGLACQKYGLIFRRPRGLFISIHDK--  543 (848)
Q Consensus       466 ~~E~tpe~a~~~T~G~ai~AtGsPf~pv~y~g~~~~~~q~nn~e~lPvvYTPGVG~acl~~~~i~r~p~gm~L~~~d~--  543 (848)
                                                  ||+     ..+.|..++||++||||||++|+.|+.+|+.|+|||+|++|+  
T Consensus       109 ----------------------------FYr-----ll~~h~ee~mPiVYTPTVG~Ac~~ys~~fr~prGlyisi~d~~~  155 (294)
T d1o0sa2         109 ----------------------------FYR-----VVCDHVKELMPIVYTPTVGLACQNFGYIYRKPKGLYITINDNSV  155 (294)
T ss_dssp             ----------------------------HHH-----HHHHTHHHHHHHHSTTHHHHHHHHHCSCCCCCCSEEEEGGGCSH
T ss_pred             ----------------------------hHH-----HHHhHHHHhcCcccCccHHHHHHHHHhhhcCcceeEEecccccc
Confidence                                        666     888999999999999999999999999999999999999998  


Q ss_pred             ccHHHHHhcCCCCCccEEEEecCceeeccCCCCCCCCCccccceeeeeecCCCCCCceeeEEeeccCCcccccCCccccc
Q psy14377        544 GHISEVLRNWPETDIRAIVVTDGERILGLGDLGAYGMGIPVGKLSLYTALAGIKPHQCLPITLDVGTNTQQLLDDPLYIG  623 (848)
Q Consensus       544 g~i~eiL~Nwp~~d~~viVVTDG~rILGLGDlG~~gmgIpvGKl~Ly~a~aGI~p~~~LPv~LDvGTnn~~ll~Dp~y~g  623 (848)
                      |++.++|+|||.++|++||||||+|||||||+|++||+||+||++|||+||||||++|||||||||||||+||+||+|+|
T Consensus       156 g~i~~il~nwp~~~V~~iVVTDG~rILGlGDlG~~Gm~I~~GKl~lyta~~Gi~P~~~LPV~LDvGTnNe~LL~DPlYlG  235 (294)
T d1o0sa2         156 SKIYQILSNWHEEDVRAIVVTDGERILGLGDLGAYGIGIPVGKLALYVALGGVQPKWCLPVLLDVGTNNMDLLNDPFYIG  235 (294)
T ss_dssp             HHHHHHHTTSSCSCCCEEEEECSSCBTTTBCCGGGGGHHHHHHHHHHHHHHCCCGGGEEEEEEESCCCCHHHHHCTTCCS
T ss_pred             chHHHHHhcCCcccceEEEEecCcceecccCcCcccchhhhhHHHHHHHhcCCChhhccceEeecCCChHHhhcCccccc
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             ccccCCCCcchhHHHHHHHHHHHHhhCCceeeeeecCCCcchHHHHHHHcccCceeccC
Q psy14377        624 LRQRRTTGQAYDDFIEEFMQAVVARYGQHVLIQFEDFANHSAFRFLDTYRNRYCVFNDD  682 (848)
Q Consensus       624 ~r~~R~~g~~y~~fvdefv~av~~~fGp~~~IqfEDf~~~naf~lL~ryr~~~~~FnDD  682 (848)
                      +|++|++|++|++||||||+|++++|||+++||||||+++|||++|+|||+++||||||
T Consensus       236 ~R~~R~~g~~Yd~fidefv~av~~~fgp~~li~~EDf~~~nA~~iL~kyr~~~~~FNDD  294 (294)
T d1o0sa2         236 LRHKRVRGKDYDTLLDNFMKACTKKYGQKTLIQFEDFANPNAFRLLDKYQDKYTMFNDD  294 (294)
T ss_dssp             CSSCCCCSHHHHHHHHHHHHHHHHHHCTTCEEEECSCCHHHHHHHHHHHTTTSEEEEHH
T ss_pred             ccCCCCCchHHHHHHHHHHHHHHHhhCCCCEEeehhCCChhHHHHHHHhcccCCccCCC
Confidence            99999999999999999999999999999999999999999999999999999999998

>d1gq2a1 c.2.1.7 (A:280-580) Mitochondrial NAD(P)-dependent malic enzyme {Domestic pigeon (Columba livia) [TaxId: 8932]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Mitochondrial NAD(P)-dependent malic enzyme
species: Domestic pigeon (Columba livia) [TaxId: 8932]

Probab=100.00  E-value=4.3e-60  Score=499.99  Aligned_cols=218  Identities=59%  Similarity=0.877  Sum_probs=200.1

Q ss_pred             EEchhhHHHHHHHHHHHHHhCCcCCCceEEEeccchHHHHHHHHHHHHHHhcCCChhhhcCcEEEEcCCCcccCCCCCCC
Q psy14377        215 LIGESCVNDVAGLLASLRITKTRLSDNTILFQGAGEASLGIADLCVMAMQKEGTSEQDARDKIWMVDSKGLIVKDRPEGG  294 (848)
Q Consensus       215 qhGTA~V~~lAgll~Al~~tg~~l~d~riv~~GAGaAg~gia~ll~~~m~~~G~s~~eA~~~i~~vD~kGLi~~~r~~~~  294 (848)
                      ||||++|+ ||||+||+|++|++|+||||||+|||+||+|||++|+++|+++|+|++||+++|||+|++|||+++|.+  
T Consensus         1 IQGTaaV~-lAglinAlki~gk~l~d~kiV~~GAGsAg~gia~~l~~~~~~~G~~~~~a~~~i~l~D~kGlv~~~R~~--   77 (298)
T d1gq2a1           1 IQGTASVA-VAGLLAALRITKNRLSDHTVLFQGAGEAALGIANLIVMAMQKEGVSKEEAIKRIWMVDSKGLIVKGRAS--   77 (298)
T ss_dssp             THHHHHHH-HHHHHHHHHHHTSCGGGCCEEEECCSHHHHHHHHHHHHHHHHHTCCHHHHHTTEEEEETTEECBTTCSS--
T ss_pred             CcHHHHHH-HHHHHHHHHHhCCCHHHcEEEEECccHHHHHHHHHHHHHHHHcCCChhhccceEEEEeCCCcccCCCcc--
Confidence            58999999 999999999999999999999999999999999999999999999999999999999999999999985  


Q ss_pred             CCccccccccccCCcchhhhhhhccccccHHHHhhhcccccCcccccchhHHHHHhhccccccCCChhhHHHHHHhhccc
Q psy14377        295 VTGHKVHYAKKHAPVKNLADVVKTGMAFSIEERQALGIHGLLPAAVKSQDEQLHLCKLNVDRYEDPLNKYIYLQALAVKT  374 (848)
Q Consensus       295 l~~~k~~~a~~~~~~~~l~~~~n~g~~~~~~er~~~~~~G~~p~~v~~~~~q~~~~~~~~~~~~~~~~~~~~L~~l~~~~  374 (848)
                      ++++|.+|+++.++.+                                                                
T Consensus        78 l~~~k~~~a~~~~~~~----------------------------------------------------------------   93 (298)
T d1gq2a1          78 LTPEKEHFAHEHCEMK----------------------------------------------------------------   93 (298)
T ss_dssp             CCTTGGGGCBSCCCCC----------------------------------------------------------------
T ss_pred             cCHHHHHHHHHhhhhh----------------------------------------------------------------
Confidence            7888888887653211                                                                


Q ss_pred             ceeEEEeccCceecccccCCCCCCCcccccccHHHHHcCCCcCccCceeeEEccccccccCCCCCCCHHHHHHHHhcCCC
Q psy14377        375 DIRAIVVTDGERILGLGDLGAYGMGIPVGKLSLYTALAGIKPHQCLPITLDVGTNWRRAAAIPQVFTADILKDMAAFNKR  454 (848)
Q Consensus       375 ~~~~~~~~d~~~l~g~~~~g~~~~~~~~g~~~L~~al~g~kP~~~~~~~v~iG~~~~~~S~~~g~FTeevvk~Ma~~~~r  454 (848)
                                                     +|.++++.+||      +++||+     |++||+||+|+||.|+++|+|
T Consensus        94 -------------------------------~l~~~i~~vkp------tvliG~-----s~~~g~ft~evv~~ma~~~~~  131 (298)
T d1gq2a1          94 -------------------------------NLEDIVKDIKP------TVLIGV-----AAIGGAFTQQILQDMAAFNKR  131 (298)
T ss_dssp             -------------------------------CHHHHHHHHCC------SEEEEC-----SCCTTCSCHHHHHHHHHHCSS
T ss_pred             -------------------------------hhHHHhhccCh------heeEec-----ccccCcCCHHHHHHHHhhCCC
Confidence                                           24456667788      577997     899999999999999999999


Q ss_pred             ceEEecCCCCCccCCCHHHHhccCCCcEEEEeCCCCCCccc-CCeEEecccchhhccCCeEecchhhhHHHhhccccccC
Q psy14377        455 PIIFALSNPTSKAECTAEQAYVNTDGRGVFASGSPFDPVTY-KGKTFTPGQEYVVELMPIVYTPTVGLACQKYGLIFRRP  533 (848)
Q Consensus       455 PIIFaLSNPt~~~E~tpe~a~~~T~G~ai~AtGsPf~pv~y-~g~~~~~~q~nn~e~lPvvYTPGVG~acl~~~~i~r~p  533 (848)
                      ||||||||||+++||+|||+|+||+|+|||||||||+||+| +||+++|+|+||++.     |||+|++++.+++. +++
T Consensus       132 PIIFaLSNPt~~~E~~~~~a~~wt~G~ai~AsGspf~pv~~~~Grs~~pnQ~NN~~~-----FPGiglGal~~~A~-~It  205 (298)
T d1gq2a1         132 PIIFALSNPTSKAECTAEQLYKYTEGRGIFASGSPFDPVTLPSGQTLYPGQGNNSYV-----FPGVALGVISCGLK-HIG  205 (298)
T ss_dssp             CEEEECCSSGGGCSSCHHHHHHHTTTCCEEEESSCCCCEECTTSCEECCEECCGGGT-----HHHHHHHHHHHTCS-SCC
T ss_pred             CEEEEccCCCCcCCCCHHHHhhhcccceEEeecCCCCCeEecCCeEEecCCCchhhh-----hhhHHHHHHHhhhh-hCC
Confidence            99999999999999999999999999999999999999999 899999999999954     79999999999985 799


Q ss_pred             ccceeeccCcccHHHHHhcC
Q psy14377        534 RGLFISIHDKGHISEVLRNW  553 (848)
Q Consensus       534 ~gm~L~~~d~g~i~eiL~Nw  553 (848)
                      ++|+++      ..+.|++.
T Consensus       206 d~M~~a------AA~alA~~  219 (298)
T d1gq2a1         206 DDVFLT------TAEVIAQE  219 (298)
T ss_dssp             HHHHHH------HHHHHHHT
T ss_pred             HHHHHH------HHHHHHHh
Confidence            999996      67788775

>d1o0sa1 c.2.1.7 (A:296-603) Mitochondrial NAD(P)-dependent malic enzyme {Pig roundworm (Ascaris suum) [TaxId: 6253]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Mitochondrial NAD(P)-dependent malic enzyme
species: Pig roundworm (Ascaris suum) [TaxId: 6253]

Probab=100.00  E-value=5.2e-60  Score=500.77  Aligned_cols=218  Identities=39%  Similarity=0.647  Sum_probs=201.4

Q ss_pred             EEchhhHHHHHHHHHHHHHhCCcCCCceEEEeccchHHHHHHHHHHHHHHhcCCChhhhcCcEEEEcCCCcccCCCCCCC
Q psy14377        215 LIGESCVNDVAGLLASLRITKTRLSDNTILFQGAGEASLGIADLCVMAMQKEGTSEQDARDKIWMVDSKGLIVKDRPEGG  294 (848)
Q Consensus       215 qhGTA~V~~lAgll~Al~~tg~~l~d~riv~~GAGaAg~gia~ll~~~m~~~G~s~~eA~~~i~~vD~kGLi~~~r~~~~  294 (848)
                      ||||++|+ ||||+||+|++|++|+||||||+|||+||+|||++|+.+|+++|+|++||+++|||||++|||+++|.+  
T Consensus         1 IQGTa~V~-lAglinAlki~gk~l~d~kivi~GAGaAg~gia~~l~~~~~~~G~~~~~a~~~i~~vD~~Glv~~~r~d--   77 (308)
T d1o0sa1           1 IQGTASVI-VAGLLTCTRVTKKLVSQEKYLFFGAGAASTGIAEMIVHQMQNEGISKEEACNRIYLMDIDGLVTKNRKE--   77 (308)
T ss_dssp             HHHHHHHH-HHHHHHHHHHHCCCGGGCCEEEECCSHHHHHHHHHHHHHHHTTTCCHHHHHHTEEEEETTEECBTTCSS--
T ss_pred             CcHHHHHH-HHHHHHHHHHhCCCHHHcEEEEECcCHHHHHHHHHHHHHHHhcCCchhhhhceEEEEeCCCCccCCCcc--
Confidence            58999999 999999999999999999999999999999999999999999999999999999999999999999975  


Q ss_pred             CCccccccccccCCcchhhhhhhccccccHHHHhhhcccccCcccccchhHHHHHhhccccccCCChhhHHHHHHhhccc
Q psy14377        295 VTGHKVHYAKKHAPVKNLADVVKTGMAFSIEERQALGIHGLLPAAVKSQDEQLHLCKLNVDRYEDPLNKYIYLQALAVKT  374 (848)
Q Consensus       295 l~~~k~~~a~~~~~~~~l~~~~n~g~~~~~~er~~~~~~G~~p~~v~~~~~q~~~~~~~~~~~~~~~~~~~~L~~l~~~~  374 (848)
                      ++++|.+|+++.++..                                                                
T Consensus        78 ~~~~k~~~a~~~~~~~----------------------------------------------------------------   93 (308)
T d1o0sa1          78 MNPRHVQFAKDMPETT----------------------------------------------------------------   93 (308)
T ss_dssp             CCGGGTTTCBSSCCCC----------------------------------------------------------------
T ss_pred             cCHHHHHHHHhcccCC----------------------------------------------------------------
Confidence            8899998887653211                                                                


Q ss_pred             ceeEEEeccCceecccccCCCCCCCcccccccHHHHHcCCCcCccCceeeEEccccccccCCCCCCCHHHHHHHHhcCCC
Q psy14377        375 DIRAIVVTDGERILGLGDLGAYGMGIPVGKLSLYTALAGIKPHQCLPITLDVGTNWRRAAAIPQVFTADILKDMAAFNKR  454 (848)
Q Consensus       375 ~~~~~~~~d~~~l~g~~~~g~~~~~~~~g~~~L~~al~g~kP~~~~~~~v~iG~~~~~~S~~~g~FTeevvk~Ma~~~~r  454 (848)
                                                     +|.++++++||      +++||+     |++||+||+|+||+|+++|+|
T Consensus        94 -------------------------------~l~~~i~~~kp------tvliG~-----s~~~g~ft~evv~~Ma~~~~~  131 (308)
T d1o0sa1          94 -------------------------------SILEVIRAARP------GALIGA-----STVRGAFNEEVIRAMAEINER  131 (308)
T ss_dssp             -------------------------------CHHHHHHHHCC------SEEEEC-----SSCTTCSCHHHHHHHHHHCSS
T ss_pred             -------------------------------cHHHHHhcccc------ccEEec-----ccccCCCCHHHHHHHHhhCCC
Confidence                                           35667778888      567997     899999999999999999999


Q ss_pred             ceEEecCCCCCccCCCHHHHhccCCCcEEEEeCCCCCCcccCCeEEecccchhhccCCeEecchhhhHHHhhccccccCc
Q psy14377        455 PIIFALSNPTSKAECTAEQAYVNTDGRGVFASGSPFDPVTYKGKTFTPGQEYVVELMPIVYTPTVGLACQKYGLIFRRPR  534 (848)
Q Consensus       455 PIIFaLSNPt~~~E~tpe~a~~~T~G~ai~AtGsPf~pv~y~g~~~~~~q~nn~e~lPvvYTPGVG~acl~~~~i~r~p~  534 (848)
                      ||||||||||+++||+|||||+||+|++|||||||||||+|+||+++|+|+||+|.     |||+|+|++.+++. ++++
T Consensus       132 PIIFaLSNPtp~~E~~~eda~~~t~G~ai~AtGSpfp~V~~~Gr~~~p~Q~NN~li-----FPGIglGal~~~A~-~Itd  205 (308)
T d1o0sa1         132 PIIFALSNPTSKAECTAEEAYTFTNGAALYASGSPFPNFELNGHTYKPGQGNNAYI-----FPGVALGTILFQIR-HVDN  205 (308)
T ss_dssp             CEEEECCSSGGGCSSCHHHHHHTTTSCCEEEESSCCCCEEETTEEECCEECCGGGT-----HHHHHHHHHHHTBS-CCCH
T ss_pred             cEEEEccCCCCCCCCCHHHHHhhccCcEEEecCCCCCCeeecCceecccccceeee-----ccchheeeeecccc-cCCH
Confidence            99999999999999999999999999999999999999999999999999999954     79999999999985 7999


Q ss_pred             cceeeccCcccHHHHHhcC
Q psy14377        535 GLFISIHDKGHISEVLRNW  553 (848)
Q Consensus       535 gm~L~~~d~g~i~eiL~Nw  553 (848)
                      +|+++      ..+.|++.
T Consensus       206 ~M~~a------AA~aLA~~  218 (308)
T d1o0sa1         206 DLFLL------AAKKVASC  218 (308)
T ss_dssp             HHHHH------HHHHHHHT
T ss_pred             HHHHH------HHHHHHHh
Confidence            99997      67778775

>d1pj3a1 c.2.1.7 (A:280-573) Mitochondrial NAD(P)-dependent malic enzyme {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Mitochondrial NAD(P)-dependent malic enzyme
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=1.6e-59  Score=495.05  Aligned_cols=221  Identities=42%  Similarity=0.682  Sum_probs=201.8

Q ss_pred             EEchhhHHHHHHHHHHHHHhCCcCCCceEEEeccchHHHHHHHHHHHHHHhcCCChhhhcCcEEEEcCCCcccCCCCCCC
Q psy14377        215 LIGESCVNDVAGLLASLRITKTRLSDNTILFQGAGEASLGIADLCVMAMQKEGTSEQDARDKIWMVDSKGLIVKDRPEGG  294 (848)
Q Consensus       215 qhGTA~V~~lAgll~Al~~tg~~l~d~riv~~GAGaAg~gia~ll~~~m~~~G~s~~eA~~~i~~vD~kGLi~~~r~~~~  294 (848)
                      ||||++|+ ||||+||+|++||+|+||||||+|||+||+|||++|+.+|+++|+++++|++||||+|++|||+++|.+ .
T Consensus         1 IqGTa~V~-lAglinAlki~gk~l~d~kiv~~GAGsAg~gia~ll~~~~~~~g~~~~~a~~~i~lvD~~Glv~~~r~~-~   78 (294)
T d1pj3a1           1 IQGTAAVA-LAGLLAAQKVISKPISEHKILFLGAGEAALGIANLIVMSMVENGLSEQEAQKKIWMFDKYGLLVKGRKA-K   78 (294)
T ss_dssp             HHHHHHHH-HHHHHHHHHHHCCCGGGCCEEEECCSHHHHHHHHHHHHHHHHTTCCHHHHHHTEEEEETTEECBTTCSS-C
T ss_pred             CcHHHHHH-HHHHHHHHHHhCCCHHHcEEEEECccHHHHHHHHHHHHHHHhcCCchhhccccEEEEeCCCCccCCCCc-c
Confidence            59999999 999999999999999999999999999999999999999999999999999999999999999999976 5


Q ss_pred             CCccccccccccCCcchhhhhhhccccccHHHHhhhcccccCcccccchhHHHHHhhccccccCCChhhHHHHHHhhccc
Q psy14377        295 VTGHKVHYAKKHAPVKNLADVVKTGMAFSIEERQALGIHGLLPAAVKSQDEQLHLCKLNVDRYEDPLNKYIYLQALAVKT  374 (848)
Q Consensus       295 l~~~k~~~a~~~~~~~~l~~~~n~g~~~~~~er~~~~~~G~~p~~v~~~~~q~~~~~~~~~~~~~~~~~~~~L~~l~~~~  374 (848)
                      ++.+|.+|++....                                                                  
T Consensus        79 ~~~~k~~~a~~~~~------------------------------------------------------------------   92 (294)
T d1pj3a1          79 IDSYQEPFTHSAPE------------------------------------------------------------------   92 (294)
T ss_dssp             CCTTTGGGCBCCCS------------------------------------------------------------------
T ss_pred             cHHHHHHhhccccc------------------------------------------------------------------
Confidence            78888888774311                                                                  


Q ss_pred             ceeEEEeccCceecccccCCCCCCCcccccccHHHHHcCCCcCccCceeeEEccccccccCCCCCCCHHHHHHHHhcCCC
Q psy14377        375 DIRAIVVTDGERILGLGDLGAYGMGIPVGKLSLYTALAGIKPHQCLPITLDVGTNWRRAAAIPQVFTADILKDMAAFNKR  454 (848)
Q Consensus       375 ~~~~~~~~d~~~l~g~~~~g~~~~~~~~g~~~L~~al~g~kP~~~~~~~v~iG~~~~~~S~~~g~FTeevvk~Ma~~~~r  454 (848)
                                 .                .+.+|.++++.+||      |++||+     |++||+|||||||+|+++|+|
T Consensus        93 -----------~----------------~~~~L~e~i~~~kp------tvliG~-----S~~~g~ft~evi~~Ma~~~~~  134 (294)
T d1pj3a1          93 -----------S----------------IPDTFEDAVNILKP------STIIGV-----AGAGRLFTPDVIRAMASINER  134 (294)
T ss_dssp             -----------S----------------CCSSHHHHHHHHCC------SEEEEC-----CCSSCCSCHHHHHHHHHHCSS
T ss_pred             -----------c----------------chhHHHHHHHhcCC------ceEEEe-----cCCCCcCCHHHHHHHHhcCCC
Confidence                       0                01257778888889      678997     899999999999999999999


Q ss_pred             ceEEecCCCCCccCCCHHHHhccCCCcEEEEeCCCCCCccc-CCeEEecccchhhccCCeEecchhhhHHHhhccccccC
Q psy14377        455 PIIFALSNPTSKAECTAEQAYVNTDGRGVFASGSPFDPVTY-KGKTFTPGQEYVVELMPIVYTPTVGLACQKYGLIFRRP  533 (848)
Q Consensus       455 PIIFaLSNPt~~~E~tpe~a~~~T~G~ai~AtGsPf~pv~y-~g~~~~~~q~nn~e~lPvvYTPGVG~acl~~~~i~r~p  533 (848)
                      ||||||||||+++||+|||||+||+||+||||||||+||+| +||+++|+|+||++.     |||+|++++.+++. +++
T Consensus       135 PIIFaLSNPt~~~e~~~~~a~~~t~grai~asGspf~~v~~~~Gr~~~pnQ~NN~~i-----FPGiglGal~~~A~-~It  208 (294)
T d1pj3a1         135 PVIFALSNPTAQAECTAEEAYTLTEGRCLFASGSPFGPVKLTDGRVFTPGQGNNVYI-----FPGVALAVILCNTR-HIS  208 (294)
T ss_dssp             CEEEECCSSGGGCSCCHHHHHHHTTTCCEEEESSCCCCEECTTSCEECCEECCGGGT-----HHHHHHHHHHTTCS-CCC
T ss_pred             cEEEEccCCCCcCCcCHHHHHhhccCceEeecCCccCCeEeCCCcEecCCCCceecc-----ccchhhHHHhcCCC-CcC
Confidence            99999999999999999999999999999999999999999 699999999999954     79999999999985 799


Q ss_pred             ccceeeccCcccHHHHHhcC
Q psy14377        534 RGLFISIHDKGHISEVLRNW  553 (848)
Q Consensus       534 ~gm~L~~~d~g~i~eiL~Nw  553 (848)
                      ++|+++      ..+.|++.
T Consensus       209 d~M~~a------AA~aLA~~  222 (294)
T d1pj3a1         209 DSVFLE------AAKALTSQ  222 (294)
T ss_dssp             HHHHHH------HHHHHHTT
T ss_pred             HHHHHH------HHHHHHhh
Confidence            999997      77888875

>d1vl6a1 c.2.1.7 (A:155-376) Malate oxidoreductase (malic enzyme) {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Malate oxidoreductase (malic enzyme)
species: Thermotoga maritima [TaxId: 2336]

Probab=100.00  E-value=5.4e-45  Score=371.17  Aligned_cols=192  Identities=23%  Similarity=0.390  Sum_probs=156.4

Q ss_pred             EEchhhHHHHHHHHHHHHHhCCcCCCceEEEeccchHHHHHHHHHHHHHHhcCCChhhhcCcEEEEcCCCcccCCCCCCC
Q psy14377        215 LIGESCVNDVAGLLASLRITKTRLSDNTILFQGAGEASLGIADLCVMAMQKEGTSEQDARDKIWMVDSKGLIVKDRPEGG  294 (848)
Q Consensus       215 qhGTA~V~~lAgll~Al~~tg~~l~d~riv~~GAGaAg~gia~ll~~~m~~~G~s~~eA~~~i~~vD~kGLi~~~r~~~~  294 (848)
                      ||||++|+ ||||+||+|++|++|+||||||+|||+||+|||+||+++          ++++||++|++|||+++|.+..
T Consensus         2 iQGTaaV~-LAgll~a~~~~g~~l~d~riv~~GAGsAg~gia~~l~~~----------~~~~i~~~D~~GLi~~~r~~~~   70 (222)
T d1vl6a1           2 QQGTAVVV-SAAFLNALKLTEKKIEEVKVVVNGIGAAGYNIVKFLLDL----------GVKNVVAVDRKGILNENDPETC   70 (222)
T ss_dssp             HHHHHHHH-HHHHHHHHHHHTCCTTTCEEEEECCSHHHHHHHHHHHHH----------TCCEEEEEETTEECCTTSGGGC
T ss_pred             CchHHHHH-HHHHHHHHHHhCCChhhcEEEEEChHHHHHHHHHHHHHh----------cccceEeecceeEEEcCccccc
Confidence            69999999 999999999999999999999999999999999998754          4899999999999999986544


Q ss_pred             CCccccccccccCCcchhhhhhhccccccHHHHhhhcccccCcccccchhHHHHHhhccccccCCChhhHHHHHHhhccc
Q psy14377        295 VTGHKVHYAKKHAPVKNLADVVKTGMAFSIEERQALGIHGLLPAAVKSQDEQLHLCKLNVDRYEDPLNKYIYLQALAVKT  374 (848)
Q Consensus       295 l~~~k~~~a~~~~~~~~l~~~~n~g~~~~~~er~~~~~~G~~p~~v~~~~~q~~~~~~~~~~~~~~~~~~~~L~~l~~~~  374 (848)
                      ++++|.++++..+.                                                                  
T Consensus        71 ~~~~~~~~~~~~~~------------------------------------------------------------------   84 (222)
T d1vl6a1          71 LNEYHLEIARITNP------------------------------------------------------------------   84 (222)
T ss_dssp             SSHHHHHHHHTSCT------------------------------------------------------------------
T ss_pred             ccHHHHHHHhhhcc------------------------------------------------------------------
Confidence            66665555543221                                                                  


Q ss_pred             ceeEEEeccCceecccccCCCCCCCcccccccHHHHHcCCCcCccCceeeEEccccccccCCCCCCCHHHHHHHHhcCCC
Q psy14377        375 DIRAIVVTDGERILGLGDLGAYGMGIPVGKLSLYTALAGIKPHQCLPITLDVGTNWRRAAAIPQVFTADILKDMAAFNKR  454 (848)
Q Consensus       375 ~~~~~~~~d~~~l~g~~~~g~~~~~~~~g~~~L~~al~g~kP~~~~~~~v~iG~~~~~~S~~~g~FTeevvk~Ma~~~~r  454 (848)
                                .+.                ..+|.++++++        ++++|+      +.+|+||+|++++|   ++|
T Consensus        85 ----------~~~----------------~~~l~~~l~g~--------~~~~g~------~~~~~~~~e~m~~~---~~r  121 (222)
T d1vl6a1          85 ----------ERL----------------SGDLETALEGA--------DFFIGV------SRGNILKPEWIKKM---SRK  121 (222)
T ss_dssp             ----------TCC----------------CSCHHHHHTTC--------SEEEEC------SCSSCSCHHHHTTS---CSS
T ss_pred             ----------hhh----------------hcchHhhccCc--------ceeccc------cccccccHHHHhhc---CCC
Confidence                      000                11356777665        788885      67999999876655   589


Q ss_pred             ceEEecCCCCCccCCCHHHHhccCCCcEEEEeCCCCCCcccCCeEEecccchhhccCCeEecchhhhHHHhhccccccCc
Q psy14377        455 PIIFALSNPTSKAECTAEQAYVNTDGRGVFASGSPFDPVTYKGKTFTPGQEYVVELMPIVYTPTVGLACQKYGLIFRRPR  534 (848)
Q Consensus       455 PIIFaLSNPt~~~E~tpe~a~~~T~G~ai~AtGsPf~pv~y~g~~~~~~q~nn~e~lPvvYTPGVG~acl~~~~i~r~p~  534 (848)
                      ||||||||||+  ||+||+  +||+|++||||||||+          |+|+||+|.     |||+|++++.+++  |+++
T Consensus       122 PIIFpLSNPt~--~~e~~~--a~~~G~ai~AtGsp~~----------p~Q~NN~yi-----FPGiglGal~~~a--ritd  180 (222)
T d1vl6a1         122 PVIFALANPVP--EIDPEL--AREAGAFIVATGRSDH----------PNQVNNLLA-----FPGIMKGAVEKRS--KITK  180 (222)
T ss_dssp             CEEEECCSSSC--SSCHHH--HHHTTCSEEEESCTTS----------SSBCCGGGT-----HHHHHHHHHHHCS--CCCH
T ss_pred             CEEEecCCCcc--chhhhh--heeccceEEecCCCCC----------CccCcceee-----cchHHHHHHHhcc--ccch
Confidence            99999999995  555664  4888999999999854          699999954     7999999999875  5999


Q ss_pred             cceeeccCcccHHHHHhcC
Q psy14377        535 GLFISIHDKGHISEVLRNW  553 (848)
Q Consensus       535 gm~L~~~d~g~i~eiL~Nw  553 (848)
                      +||+.      ..+.|++.
T Consensus       181 ~m~~a------AA~alA~~  193 (222)
T d1vl6a1         181 NMLLS------AVEAIARS  193 (222)
T ss_dssp             HHHHH------HHHHHHHT
T ss_pred             HHHHH------HHHHHHhc
Confidence            99996      67777775

>d1gq2a1 c.2.1.7 (A:280-580) Mitochondrial NAD(P)-dependent malic enzyme {Domestic pigeon (Columba livia) [TaxId: 8932]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Mitochondrial NAD(P)-dependent malic enzyme
species: Domestic pigeon (Columba livia) [TaxId: 8932]

Probab=100.00  E-value=1.1e-42  Score=366.81  Aligned_cols=195  Identities=41%  Similarity=0.583  Sum_probs=170.0

Q ss_pred             CcccccccCCCCCCceEEEeccchhHHHHHHHHHHHHHhcCCCccccCCeEEEEcCCCccccCCCCCCCChhhhhhcccC
Q psy14377          1 LLASLRITKTRLSDNTILFQGAGEASLGIADLCVMAMQKEGTSEQDARDKIWMVDSKGLIVKDRPEGGVTGHKVHYAKKH   80 (848)
Q Consensus         1 llnal~i~gK~i~d~kiV~~GAGaA~ia~a~L~~~am~~~G~~~e~~~~ni~m~DskGvi~~~R~d~~l~~~k~~~a~~~   80 (848)
                      |||||+++||+|+|+||||+|||+||++|+++|+++|.+.|+++|++++|||||||||+|+++|+|  ++++|++|++++
T Consensus        12 linAlki~gk~l~d~kiV~~GAGsAg~gia~~l~~~~~~~G~~~~~a~~~i~l~D~kGlv~~~R~~--l~~~k~~~a~~~   89 (298)
T d1gq2a1          12 LLAALRITKNRLSDHTVLFQGAGEAALGIANLIVMAMQKEGVSKEEAIKRIWMVDSKGLIVKGRAS--LTPEKEHFAHEH   89 (298)
T ss_dssp             HHHHHHHHTSCGGGCCEEEECCSHHHHHHHHHHHHHHHHHTCCHHHHHTTEEEEETTEECBTTCSS--CCTTGGGGCBSC
T ss_pred             HHHHHHHhCCCHHHcEEEEECccHHHHHHHHHHHHHHHHcCCChhhccceEEEEeCCCcccCCCcc--cCHHHHHHHHHh
Confidence            589999999999999999999999999999999999999999999999999999999999999998  899999999988


Q ss_pred             CCCCCHHHHhcccCCCchhh-----------hhcc---CCccccccccCC----------------ccccccccCCcCc-
Q psy14377         81 APVKNLADVVKTVKPSILIE-----------ELKG---LSQRDFLSSWLN----------------RGPCLNCWGKRDF-  129 (848)
Q Consensus        81 ~~~~tL~ea~~~s~~~v~~g-----------~vk~---M~~~piifA~sn----------------~~~~i~atG~~~f-  129 (848)
                      ++.++|+|+++..||++|+|           +|+.   |++|||||+|||                .++||+|||+| | 
T Consensus        90 ~~~~~l~~~i~~vkptvliG~s~~~g~ft~evv~~ma~~~~~PIIFaLSNPt~~~E~~~~~a~~wt~G~ai~AsGsp-f~  168 (298)
T d1gq2a1          90 CEMKNLEDIVKDIKPTVLIGVAAIGGAFTQQILQDMAAFNKRPIIFALSNPTSKAECTAEQLYKYTEGRGIFASGSP-FD  168 (298)
T ss_dssp             CCCCCHHHHHHHHCCSEEEECSCCTTCSCHHHHHHHHHHCSSCEEEECCSSGGGCSSCHHHHHHHTTTCCEEEESSC-CC
T ss_pred             hhhhhhHHHhhccChheeEecccccCcCCHHHHHHHHhhCCCCEEEEccCCCCcCCCCHHHHhhhcccceEEeecCC-CC
Confidence            77889999999999999988           7774   589999999999                67778877665 2 


Q ss_pred             ---------cCCcCccceeeecccCh-----------hhHHHHHHhhccCChhhHhhhhhcccccccccCCCCCCCCccc
Q psy14377        130 ---------EQDKQGISYSIHASLGI-----------ADLCVMAMQKEGTSEQDARDKIWMVDSKGLIVKDRPEGGVTGH  189 (848)
Q Consensus       130 ---------dypnQ~Nnv~vfp~Lgl-----------~~m~~~A~~ala~~v~d~~~~ay~~~~~G~lYPkppd~gIr~e  189 (848)
                               +||||+||+|+||+||+           ++|+++|+++||..+++++.      ..|.+||..+  .++.+
T Consensus       169 pv~~~~Grs~~pnQ~NN~~~FPGiglGal~~~A~~Itd~M~~aAA~alA~~v~~~~l------~~g~i~P~~~--~ir~v  240 (298)
T d1gq2a1         169 PVTLPSGQTLYPGQGNNSYVFPGVALGVISCGLKHIGDDVFLTTAEVIAQEVSEENL------QEGRLYPPLV--TIQQV  240 (298)
T ss_dssp             CEECTTSCEECCEECCGGGTHHHHHHHHHHHTCSSCCHHHHHHHHHHHHHTCCHHHH------HHTCSSCCGG--GHHHH
T ss_pred             CeEecCCeEEecCCCchhhhhhhHHHHHHHhhhhhCCHHHHHHHHHHHHHhcchhcC------CCCceeCCcc--hHHHh
Confidence                     58999999999997655           99999999999999988877      7899999433  56666


Q ss_pred             cccccc---cchhhhhHHhh
Q psy14377        190 KVHYAK---KHAPVKNLADV  206 (848)
Q Consensus       190 dIavAk---~fe~ek~Lle~  206 (848)
                      +..+|.   ..++++++++.
T Consensus       241 s~~VA~aVa~~A~~~GvA~~  260 (298)
T d1gq2a1         241 SLKIAVRIAKEAYRNNTAST  260 (298)
T ss_dssp             HHHHHHHHHHHHHHTTCCCC
T ss_pred             HHHHHHHHHHHHHHcCCCCC
Confidence            655544   34456666554

>d1o0sa1 c.2.1.7 (A:296-603) Mitochondrial NAD(P)-dependent malic enzyme {Pig roundworm (Ascaris suum) [TaxId: 6253]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Mitochondrial NAD(P)-dependent malic enzyme
species: Pig roundworm (Ascaris suum) [TaxId: 6253]

Probab=100.00  E-value=4.4e-42  Score=363.29  Aligned_cols=195  Identities=28%  Similarity=0.454  Sum_probs=170.2

Q ss_pred             CcccccccCCCCCCceEEEeccchhHHHHHHHHHHHHHhcCCCccccCCeEEEEcCCCccccCCCCCCCChhhhhhcccC
Q psy14377          1 LLASLRITKTRLSDNTILFQGAGEASLGIADLCVMAMQKEGTSEQDARDKIWMVDSKGLIVKDRPEGGVTGHKVHYAKKH   80 (848)
Q Consensus         1 llnal~i~gK~i~d~kiV~~GAGaA~ia~a~L~~~am~~~G~~~e~~~~ni~m~DskGvi~~~R~d~~l~~~k~~~a~~~   80 (848)
                      ||||||++||+++|+||||+|||+||++|++||+.+|++.|+++||+++|||||||+|+|+++|+|  ++++|.+||+++
T Consensus        12 linAlki~gk~l~d~kivi~GAGaAg~gia~~l~~~~~~~G~~~~~a~~~i~~vD~~Glv~~~r~d--~~~~k~~~a~~~   89 (308)
T d1o0sa1          12 LLTCTRVTKKLVSQEKYLFFGAGAASTGIAEMIVHQMQNEGISKEEACNRIYLMDIDGLVTKNRKE--MNPRHVQFAKDM   89 (308)
T ss_dssp             HHHHHHHHCCCGGGCCEEEECCSHHHHHHHHHHHHHHHTTTCCHHHHHHTEEEEETTEECBTTCSS--CCGGGTTTCBSS
T ss_pred             HHHHHHHhCCCHHHcEEEEECcCHHHHHHHHHHHHHHHhcCCchhhhhceEEEEeCCCCccCCCcc--cCHHHHHHHHhc
Confidence            589999999999999999999999999999999999999999999999999999999999999998  999999999998


Q ss_pred             CCCCCHHHHhcccCCCchhh-----------hhccC---CccccccccCC----------------ccccccccCCcCcc
Q psy14377         81 APVKNLADVVKTVKPSILIE-----------ELKGL---SQRDFLSSWLN----------------RGPCLNCWGKRDFE  130 (848)
Q Consensus        81 ~~~~tL~ea~~~s~~~v~~g-----------~vk~M---~~~piifA~sn----------------~~~~i~atG~~~fd  130 (848)
                      ++.++|.|+++..||++|+|           +||.|   ++|||||||||                .+.||++||+| |+
T Consensus        90 ~~~~~l~~~i~~~kptvliG~s~~~g~ft~evv~~Ma~~~~~PIIFaLSNPtp~~E~~~eda~~~t~G~ai~AtGSp-fp  168 (308)
T d1o0sa1          90 PETTSILEVIRAARPGALIGASTVRGAFNEEVIRAMAEINERPIIFALSNPTSKAECTAEEAYTFTNGAALYASGSP-FP  168 (308)
T ss_dssp             CCCCCHHHHHHHHCCSEEEECSSCTTCSCHHHHHHHHHHCSSCEEEECCSSGGGCSSCHHHHHHTTTSCCEEEESSC-CC
T ss_pred             ccCCcHHHHHhccccccEEecccccCCCCHHHHHHHHhhCCCcEEEEccCCCCCCCCCHHHHHhhccCcEEEecCCC-CC
Confidence            77789999999999999998           78777   79999999999                57899999965 43


Q ss_pred             ---------CCcCccceeeecccCh-----------hhHHHHHHhhccCChhhHhhhhhcccccccccCCCCCCCCcccc
Q psy14377        131 ---------QDKQGISYSIHASLGI-----------ADLCVMAMQKEGTSEQDARDKIWMVDSKGLIVKDRPEGGVTGHK  190 (848)
Q Consensus       131 ---------ypnQ~Nnv~vfp~Lgl-----------~~m~~~A~~ala~~v~d~~~~ay~~~~~G~lYPkppd~gIr~ed  190 (848)
                               +|||+||+|+||+||+           ++|+++|+++||..++++.+      ..|.+||++.  .++.++
T Consensus       169 ~V~~~Gr~~~p~Q~NN~liFPGIglGal~~~A~~Itd~M~~aAA~aLA~~v~~~~l------~~g~i~P~~~--~~r~vs  240 (308)
T d1o0sa1         169 NFELNGHTYKPGQGNNAYIFPGVALGTILFQIRHVDNDLFLLAAKKVASCVTEDSL------KVGRVYPQLK--EIREIS  240 (308)
T ss_dssp             CEEETTEEECCEECCGGGTHHHHHHHHHHHTBSCCCHHHHHHHHHHHHHTCCHHHH------TTTCCSCCGG--GHHHHH
T ss_pred             CeeecCceecccccceeeeccchheeeeecccccCCHHHHHHHHHHHHHhcCcccC------CCCCCCCCCc--cHhhhh
Confidence                     5669999999996655           89999999999999988888      7899999554  455555


Q ss_pred             ccccc---cchhhhhHHhh
Q psy14377        191 VHYAK---KHAPVKNLADV  206 (848)
Q Consensus       191 IavAk---~fe~ek~Lle~  206 (848)
                      ..+|.   ..++++++++.
T Consensus       241 ~~VA~AVa~~A~~~GvA~~  259 (308)
T d1o0sa1         241 IQIAVEMAKYCYKNGTANL  259 (308)
T ss_dssp             HHHHHHHHHHHHHTTCBCS
T ss_pred             HHHHHHHHHHHHHcCCCCC
Confidence            44444   34455555554

>d1pj3a1 c.2.1.7 (A:280-573) Mitochondrial NAD(P)-dependent malic enzyme {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Mitochondrial NAD(P)-dependent malic enzyme
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=1.1e-41  Score=358.94  Aligned_cols=196  Identities=28%  Similarity=0.429  Sum_probs=166.6

Q ss_pred             CcccccccCCCCCCceEEEeccchhHHHHHHHHHHHHHhcCCCccccCCeEEEEcCCCccccCCCCCCCChhhhhhcccC
Q psy14377          1 LLASLRITKTRLSDNTILFQGAGEASLGIADLCVMAMQKEGTSEQDARDKIWMVDSKGLIVKDRPEGGVTGHKVHYAKKH   80 (848)
Q Consensus         1 llnal~i~gK~i~d~kiV~~GAGaA~ia~a~L~~~am~~~G~~~e~~~~ni~m~DskGvi~~~R~d~~l~~~k~~~a~~~   80 (848)
                      |+||||++||+++|+||||+|||+||++||+|++++|.+.|+++|++++|||||||+|+|+++|++. ++++|+.|++++
T Consensus        12 linAlki~gk~l~d~kiv~~GAGsAg~gia~ll~~~~~~~g~~~~~a~~~i~lvD~~Glv~~~r~~~-~~~~k~~~a~~~   90 (294)
T d1pj3a1          12 LLAAQKVISKPISEHKILFLGAGEAALGIANLIVMSMVENGLSEQEAQKKIWMFDKYGLLVKGRKAK-IDSYQEPFTHSA   90 (294)
T ss_dssp             HHHHHHHHCCCGGGCCEEEECCSHHHHHHHHHHHHHHHHTTCCHHHHHHTEEEEETTEECBTTCSSC-CCTTTGGGCBCC
T ss_pred             HHHHHHHhCCCHHHcEEEEECccHHHHHHHHHHHHHHHhcCCchhhccccEEEEeCCCCccCCCCcc-cHHHHHHhhccc
Confidence            5899999999999999999999999999999999999999999999999999999999999999874 899999999865


Q ss_pred             C--CCCCHHHHhcccCCCchhh-----------hhccC---CccccccccCC----------------cccccccc----
Q psy14377         81 A--PVKNLADVVKTVKPSILIE-----------ELKGL---SQRDFLSSWLN----------------RGPCLNCW----  124 (848)
Q Consensus        81 ~--~~~tL~ea~~~s~~~v~~g-----------~vk~M---~~~piifA~sn----------------~~~~i~at----  124 (848)
                      +  ..+||+|+++..|||+|+|           |||.|   ++|||||+|||                .++||+||    
T Consensus        91 ~~~~~~~L~e~i~~~kptvliG~S~~~g~ft~evi~~Ma~~~~~PIIFaLSNPt~~~e~~~~~a~~~t~grai~asGspf  170 (294)
T d1pj3a1          91 PESIPDTFEDAVNILKPSTIIGVAGAGRLFTPDVIRAMASINERPVIFALSNPTAQAECTAEEAYTLTEGRCLFASGSPF  170 (294)
T ss_dssp             CSSCCSSHHHHHHHHCCSEEEECCCSSCCSCHHHHHHHHHHCSSCEEEECCSSGGGCSCCHHHHHHHTTTCCEEEESSCC
T ss_pred             cccchhHHHHHHHhcCCceEEEecCCCCcCCHHHHHHHHhcCCCcEEEEccCCCCcCCcCHHHHHhhccCceEeecCCcc
Confidence            4  2458999999888999988           77755   89999999999                45666665    


Q ss_pred             -------CCcCccCCcCccceeeecccCh-----------hhHHHHHHhhccCChhhHhhhhhcccccccccCCCCCCCC
Q psy14377        125 -------GKRDFEQDKQGISYSIHASLGI-----------ADLCVMAMQKEGTSEQDARDKIWMVDSKGLIVKDRPEGGV  186 (848)
Q Consensus       125 -------G~~~fdypnQ~Nnv~vfp~Lgl-----------~~m~~~A~~ala~~v~d~~~~ay~~~~~G~lYPkppd~gI  186 (848)
                             ||+  +||||+||+|+||+||+           ++|+++|+++||..++++..      ..|.+||.+.  ++
T Consensus       171 ~~v~~~~Gr~--~~pnQ~NN~~iFPGiglGal~~~A~~Itd~M~~aAA~aLA~~v~~~~l------~~~~i~P~~~--~i  240 (294)
T d1pj3a1         171 GPVKLTDGRV--FTPGQGNNVYIFPGVALAVILCNTRHISDSVFLEAAKALTSQLTDEEL------AQGRLYPPLA--NI  240 (294)
T ss_dssp             CCEECTTSCE--ECCEECCGGGTHHHHHHHHHHTTCSCCCHHHHHHHHHHHHTTCCHHHH------HTTCSSCCGG--GH
T ss_pred             CCeEeCCCcE--ecCCCCceeccccchhhHHHhcCCCCcCHHHHHHHHHHHHhhCCcccc------CCCeecCCCc--cH
Confidence                   555  68999999999996654           99999999999999988887      7899999444  56


Q ss_pred             ccccccccc---cchhhhhHHhhh
Q psy14377        187 TGHKVHYAK---KHAPVKNLADVV  207 (848)
Q Consensus       187 r~edIavAk---~fe~ek~Lle~l  207 (848)
                      +.++..+|.   +.++++++++.+
T Consensus       241 r~vs~~VA~aVa~~A~~~g~A~~~  264 (294)
T d1pj3a1         241 QEVSINIAIKVTEYLYANKMAFRY  264 (294)
T ss_dssp             HHHHHHHHHHHHHHHHHTTCCCCS
T ss_pred             HHHHHHHHHHHHHHHHHcCCCCCC
Confidence            666655554   344556655543

>d1vl6a1 c.2.1.7 (A:155-376) Malate oxidoreductase (malic enzyme) {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Malate oxidoreductase (malic enzyme)
species: Thermotoga maritima [TaxId: 2336]

Probab=100.00  E-value=8.7e-36  Score=303.15  Aligned_cols=162  Identities=17%  Similarity=0.274  Sum_probs=138.9

Q ss_pred             CcccccccCCCCCCceEEEeccchhHHHHHHHHHHHHHhcCCCccccCCeEEEEcCCCccccCCCCCCCChhhhhhcccC
Q psy14377          1 LLASLRITKTRLSDNTILFQGAGEASLGIADLCVMAMQKEGTSEQDARDKIWMVDSKGLIVKDRPEGGVTGHKVHYAKKH   80 (848)
Q Consensus         1 llnal~i~gK~i~d~kiV~~GAGaA~ia~a~L~~~am~~~G~~~e~~~~ni~m~DskGvi~~~R~d~~l~~~k~~~a~~~   80 (848)
                      ||||||++||+++|+||||+|||+||++|+++++.    .|      ++||||+||+|+|+++|++..++++|.+|+..+
T Consensus        13 ll~a~~~~g~~l~d~riv~~GAGsAg~gia~~l~~----~~------~~~i~~~D~~GLi~~~r~~~~~~~~~~~~~~~~   82 (222)
T d1vl6a1          13 FLNALKLTEKKIEEVKVVVNGIGAAGYNIVKFLLD----LG------VKNVVAVDRKGILNENDPETCLNEYHLEIARIT   82 (222)
T ss_dssp             HHHHHHHHTCCTTTCEEEEECCSHHHHHHHHHHHH----HT------CCEEEEEETTEECCTTSGGGCSSHHHHHHHHTS
T ss_pred             HHHHHHHhCCChhhcEEEEEChHHHHHHHHHHHHH----hc------ccceEeecceeEEEcCcccccccHHHHHHHhhh
Confidence            58999999999999999999999999999999984    44      479999999999999997545999999999765


Q ss_pred             C---CCCCHHHHhcc-------cCCCchhh-hhccCCccccccccCC------------ccccccccCCcCccCCcCccc
Q psy14377         81 A---PVKNLADVVKT-------VKPSILIE-ELKGLSQRDFLSSWLN------------RGPCLNCWGKRDFEQDKQGIS  137 (848)
Q Consensus        81 ~---~~~tL~ea~~~-------s~~~v~~g-~vk~M~~~piifA~sn------------~~~~i~atG~~~fdypnQ~Nn  137 (848)
                      +   ...+|.+++++       +.+.+|.. ++++|++|||||+|||            .+++|++||||  ++|||+||
T Consensus        83 ~~~~~~~~l~~~l~g~~~~~g~~~~~~~~~e~m~~~~~rPIIFpLSNPt~~~e~~~a~~~G~ai~AtGsp--~~p~Q~NN  160 (222)
T d1vl6a1          83 NPERLSGDLETALEGADFFIGVSRGNILKPEWIKKMSRKPVIFALANPVPEIDPELAREAGAFIVATGRS--DHPNQVNN  160 (222)
T ss_dssp             CTTCCCSCHHHHHTTCSEEEECSCSSCSCHHHHTTSCSSCEEEECCSSSCSSCHHHHHHTTCSEEEESCT--TSSSBCCG
T ss_pred             cchhhhcchHhhccCcceeccccccccccHHHHhhcCCCCEEEecCCCccchhhhhheeccceEEecCCC--CCCccCcc
Confidence            4   34589999997       33344433 7899999999999999            88999999999  78999999


Q ss_pred             eeeecccCh----------hhHHHHHHhhccCChhhHhhhhhcccccccccCCCCC
Q psy14377        138 YSIHASLGI----------ADLCVMAMQKEGTSEQDARDKIWMVDSKGLIVKDRPE  183 (848)
Q Consensus       138 v~vfp~Lgl----------~~m~~~A~~ala~~v~d~~~~ay~~~~~G~lYPkppd  183 (848)
                      +|+||+||+          ++|.++|++++|..+++         +.+.+||.+.+
T Consensus       161 ~yiFPGiglGal~~~aritd~m~~aAA~alA~~~~~---------~~~~i~P~~~~  207 (222)
T d1vl6a1         161 LLAFPGIMKGAVEKRSKITKNMLLSAVEAIARSCEP---------EPERIIPEAFD  207 (222)
T ss_dssp             GGTHHHHHHHHHHHCSCCCHHHHHHHHHHHHHTSCC---------BTTBSSCCTTC
T ss_pred             eeecchHHHHHHHhccccchHHHHHHHHHHHhcCCC---------CCCcccCCCCC
Confidence            999997766          99999999999977643         24889996664

>d1vl6a2 c.58.1.3 (A:1-154) Malate oxidoreductase (malic enzyme) {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: Aminoacid dehydrogenase-like, N-terminal domain
superfamily: Aminoacid dehydrogenase-like, N-terminal domain
family: Malic enzyme N-domain
domain: Malate oxidoreductase (malic enzyme)
species: Thermotoga maritima [TaxId: 2336]

Probab=99.95  E-value=7.4e-30  Score=243.82  Aligned_cols=131  Identities=27%  Similarity=0.531  Sum_probs=114.9

Q ss_pred             cchhhccCCeEecchhhhHHHhhccccccCccceeeccCcccHHHHHhcCCCCCccEEEEecCceeeccCCCCCC-CCCc
Q psy14377        504 QEYVVELMPIVYTPTVGLACQKYGLIFRRPRGLFISIHDKGHISEVLRNWPETDIRAIVVTDGERILGLGDLGAY-GMGI  582 (848)
Q Consensus       504 q~nn~e~lPvvYTPGVG~acl~~~~i~r~p~gm~L~~~d~g~i~eiL~Nwp~~d~~viVVTDG~rILGLGDlG~~-gmgI  582 (848)
                      ...+.++|+++|||||++.|..   +.+.|          ..++++...|+    .++|||||++||||||+|+. ||++
T Consensus        21 ~~~~~~dLslaYTPGVA~~c~~---I~~dp----------~~~~~yT~k~N----~VAVVtdGtaVLGLGniGp~AalPV   83 (154)
T d1vl6a2          21 EKVDRETLSLLYTPGVADVARA---CAEDP----------EKTYVYTSRWN----TVAVVSDGSAVLGLGNIGPYGALPV   83 (154)
T ss_dssp             SCCCHHHHHHHSTTTHHHHHHH---HHHCG----------GGHHHHSGGGG----EEEEEECSTTBTTTBSCCHHHHHHH
T ss_pred             CCCCHHHHHHHcCcchHHHHHH---HHhCc----------hhhhheeeecc----EEEEEeCCceeecCCCccccccccH
Confidence            3557788999999999999999   65444          45565555543    59999999999999999999 5888


Q ss_pred             cccceeeeeecCCCCCCceeeEEeeccCCcccccCCcccccccccCCCCcchhHHHHHHHHHHHHhhCCceeeeeecCCC
Q psy14377        583 PVGKLSLYTALAGIKPHQCLPITLDVGTNTQQLLDDPLYIGLRQRRTTGQAYDDFIEEFMQAVVARYGQHVLIQFEDFAN  662 (848)
Q Consensus       583 pvGKl~Ly~a~aGI~p~~~LPv~LDvGTnn~~ll~Dp~y~g~r~~R~~g~~y~~fvdefv~av~~~fGp~~~IqfEDf~~  662 (848)
                      ++||..||+.+||||   ++|||||.        +||               +++ .++++++.++||.   ||+|||++
T Consensus        84 MEGKa~LfK~fa~iD---a~Pi~l~~--------~d~---------------~~i-v~~v~~i~PtFgg---InLEDI~a  133 (154)
T d1vl6a2          84 MEGKAFLFKAFADID---AFPICLSE--------SEE---------------EKI-ISIVKSLEPSFGG---INLEDIGA  133 (154)
T ss_dssp             HHHHHHHHHHHHCCE---EEEEECSC--------CCH---------------HHH-HHHHHHTGGGCSE---EEECSCCT
T ss_pred             HHHHHHHHHHhcCCC---ceeeeccc--------cCh---------------HHH-HHHHHHhcccccc---eehhhhcC
Confidence            889999999999999   99999998        477               675 5899999999999   99999999


Q ss_pred             cchHHHHHHHccc--Cceecc
Q psy14377        663 HSAFRFLDTYRNR--YCVFND  681 (848)
Q Consensus       663 ~naf~lL~ryr~~--~~~FnD  681 (848)
                      |+||++++|+|++  ||||||
T Consensus       134 P~CFeIe~~L~~~ldIPVfHD  154 (154)
T d1vl6a2         134 PKCFRILQRLSEEMNIPVFHD  154 (154)
T ss_dssp             THHHHHHHHHHHHCSSCEEEH
T ss_pred             chhhHHHHHHHHHCCCCCcCC
Confidence            9999999999996  999998

>d1gq2a2 c.58.1.3 (A:23-279) Mitochondrial NAD(P)-dependent malic enzyme {Domestic pigeon (Columba livia) [TaxId: 8932]}

class: Alpha and beta proteins (a/b)
fold: Aminoacid dehydrogenase-like, N-terminal domain
superfamily: Aminoacid dehydrogenase-like, N-terminal domain
family: Malic enzyme N-domain
domain: Mitochondrial NAD(P)-dependent malic enzyme
species: Domestic pigeon (Columba livia) [TaxId: 8932]

Probab=99.45  E-value=4.2e-15  Score=152.21  Aligned_cols=65  Identities=72%  Similarity=1.208  Sum_probs=59.3

Q ss_pred             HHHhhcccceeEEEeccCceecccccCCCCCCCcccccccHHHHHcCCCcCccCceeeEEcccccc
Q psy14377        367 LQALAVKTDIRAIVVTDGERILGLGDLGAYGMGIPVGKLSLYTALAGIKPHQCLPITLDVGTNWRR  432 (848)
Q Consensus       367 L~~l~~~~~~~~~~~~d~~~l~g~~~~g~~~~~~~~g~~~L~~al~g~kP~~~~~~~v~iG~~~~~  432 (848)
                      |.++- .++||.+||||++++|||||||++||||++||++||++..|++|+.+|||.+++||||+.
T Consensus       125 l~nwp-~~~V~~iVVTDG~rILGlGD~G~~Gm~I~~gKl~lyta~~Gi~P~~~LPv~LDvGTnNe~  189 (257)
T d1gq2a2         125 LQSWP-ESVIKAIVVTDGERILGLGDLGCYGMGIPVGKLALYTACGGVKPHQCLPVMLDVGTDNET  189 (257)
T ss_dssp             HHTSS-CSCCCEEEEECSSSCGGGCCCGGGGGHHHHHHHHHHHHTTCCCGGGEEEEEEESCCCCHH
T ss_pred             HHhCC-CCCeeEEEEecCceeeecCCcCcCccchhhhHHHHHHHhcCCCHhhcCCeeecCCCChHH
Confidence            44443 248999999999999999999999999999999999999999999999999999999863

>d1pj3a2 c.58.1.3 (A:21-279) Mitochondrial NAD(P)-dependent malic enzyme {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Aminoacid dehydrogenase-like, N-terminal domain
superfamily: Aminoacid dehydrogenase-like, N-terminal domain
family: Malic enzyme N-domain
domain: Mitochondrial NAD(P)-dependent malic enzyme
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.40  E-value=1.6e-14  Score=148.07  Aligned_cols=60  Identities=68%  Similarity=1.201  Sum_probs=57.5

Q ss_pred             cceeEEEeccCceecccccCCCCCCCcccccccHHHHHcCCCcCccCceeeEEccccccc
Q psy14377        374 TDIRAIVVTDGERILGLGDLGAYGMGIPVGKLSLYTALAGIKPHQCLPITLDVGTNWRRA  433 (848)
Q Consensus       374 ~~~~~~~~~d~~~l~g~~~~g~~~~~~~~g~~~L~~al~g~kP~~~~~~~v~iG~~~~~~  433 (848)
                      ++||.+||||++++|||||+|++||||++||++||++..|++|+.+|||.+++||||+..
T Consensus       133 ~~v~~ivVTDG~rILGlGDlG~~Gm~I~~gKl~lyta~~Gi~P~~~lPv~lDvGTnNe~L  192 (259)
T d1pj3a2         133 NHVKAVVVTDGERILGLGDLGVYGMGIPVGKLCLYTACAGIRPDRCLPVCIDVGTDNIAL  192 (259)
T ss_dssp             SCCCEEEEECSSSCTTSCCCGGGGGHHHHHHHHHHHHHHCCCGGGEEEEEEESCCCCTTG
T ss_pred             cCceEEEEecCceeecccccCcchhhHHHhHHHHHHHcCCCChhhccceEEecCCcHHHH
Confidence            479999999999999999999999999999999999999999999999999999998753

>d1o0sa2 c.58.1.3 (A:2-295) Mitochondrial NAD(P)-dependent malic enzyme {Pig roundworm (Ascaris suum) [TaxId: 6253]}

class: Alpha and beta proteins (a/b)
fold: Aminoacid dehydrogenase-like, N-terminal domain
superfamily: Aminoacid dehydrogenase-like, N-terminal domain
family: Malic enzyme N-domain
domain: Mitochondrial NAD(P)-dependent malic enzyme
species: Pig roundworm (Ascaris suum) [TaxId: 6253]

Probab=99.40  E-value=1.5e-14  Score=150.10  Aligned_cols=58  Identities=76%  Similarity=1.286  Sum_probs=56.5

Q ss_pred             cceeEEEeccCceecccccCCCCCCCcccccccHHHHHcCCCcCccCceeeEEccccc
Q psy14377        374 TDIRAIVVTDGERILGLGDLGAYGMGIPVGKLSLYTALAGIKPHQCLPITLDVGTNWR  431 (848)
Q Consensus       374 ~~~~~~~~~d~~~l~g~~~~g~~~~~~~~g~~~L~~al~g~kP~~~~~~~v~iG~~~~  431 (848)
                      ++||.+||||++++|||||||++||||++||++||++..|++|..+|||.+++||||+
T Consensus       168 ~~V~~iVVTDG~rILGlGDlG~~Gm~I~~GKl~lyta~~Gi~P~~~LPV~LDvGTnNe  225 (294)
T d1o0sa2         168 EDVRAIVVTDGERILGLGDLGAYGIGIPVGKLALYVALGGVQPKWCLPVLLDVGTNNM  225 (294)
T ss_dssp             SCCCEEEEECSSCBTTTBCCGGGGGHHHHHHHHHHHHHHCCCGGGEEEEEEESCCCCH
T ss_pred             ccceEEEEecCcceecccCcCcccchhhhhHHHHHHHhcCCChhhccceEeecCCChH
Confidence            4899999999999999999999999999999999999999999999999999999986

>d1vl6a2 c.58.1.3 (A:1-154) Malate oxidoreductase (malic enzyme) {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: Aminoacid dehydrogenase-like, N-terminal domain
superfamily: Aminoacid dehydrogenase-like, N-terminal domain
family: Malic enzyme N-domain
domain: Malate oxidoreductase (malic enzyme)
species: Thermotoga maritima [TaxId: 2336]

Probab=99.20  E-value=1.8e-13  Score=130.33  Aligned_cols=105  Identities=9%  Similarity=0.115  Sum_probs=86.2

Q ss_pred             CccccccccCC--ccccccccCCc--CccCCcCccceeeec----ccChhhHHHHH----HhhccCChh-----------
Q psy14377        106 SQRDFLSSWLN--RGPCLNCWGKR--DFEQDKQGISYSIHA----SLGIADLCVMA----MQKEGTSEQ-----------  162 (848)
Q Consensus       106 ~~~piifA~sn--~~~~i~atG~~--~fdypnQ~Nnv~vfp----~Lgl~~m~~~A----~~ala~~v~-----------  162 (848)
                      +++++++||+|  +.+|..+..+|  +|+||+++|.|+|++    +||++|+++.|    ||++|..++           
T Consensus        24 ~~~dLslaYTPGVA~~c~~I~~dp~~~~~yT~k~N~VAVVtdGtaVLGLGniGp~AalPVMEGKa~LfK~fa~iDa~Pi~  103 (154)
T d1vl6a2          24 DRETLSLLYTPGVADVARACAEDPEKTYVYTSRWNTVAVVSDGSAVLGLGNIGPYGALPVMEGKAFLFKAFADIDAFPIC  103 (154)
T ss_dssp             CHHHHHHHSTTTHHHHHHHHHHCGGGHHHHSGGGGEEEEEECSTTBTTTBSCCHHHHHHHHHHHHHHHHHHHCCEEEEEE
T ss_pred             CHHHHHHHcCcchHHHHHHHHhCchhhhheeeeccEEEEEeCCceeecCCCccccccccHHHHHHHHHHHhcCCCceeee
Confidence            78999999999  99998888877  888999999999999    89999999999    577773221           


Q ss_pred             -hHhhhhhcccccccccCCCCCCCCccccccccccchhhhhHHhhhcCCCCeE
Q psy14377        163 -DARDKIWMVDSKGLIVKDRPEGGVTGHKVHYAKKHAPVKNLADVVKTVKPSI  214 (848)
Q Consensus       163 -d~~~~ay~~~~~G~lYPkppd~gIr~edIavAk~fe~ek~Lle~lr~~iPvF  214 (848)
                       +.......++..-.+-|  .|++||+|+|+.|+||++|++|.+++  +||+|
T Consensus       104 l~~~d~~~iv~~v~~i~P--tFggInLEDI~aP~CFeIe~~L~~~l--dIPVf  152 (154)
T d1vl6a2         104 LSESEEEKIISIVKSLEP--SFGGINLEDIGAPKCFRILQRLSEEM--NIPVF  152 (154)
T ss_dssp             CSCCCHHHHHHHHHHTGG--GCSEEEECSCCTTHHHHHHHHHHHHC--SSCEE
T ss_pred             ccccChHHHHHHHHHhcc--cccceehhhhcCchhhHHHHHHHHHC--CCCCc
Confidence             11111123344666778  89999999999999999999999976  89998

>d1gpja2 c.2.1.7 (A:144-302) Glutamyl tRNA-reductase middle domain {Archaeon Methanopyrus kandleri [TaxId: 2320]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Glutamyl tRNA-reductase middle domain
species: Archaeon Methanopyrus kandleri [TaxId: 2320]

Probab=96.12  E-value=0.0093  Score=55.52  Aligned_cols=54  Identities=26%  Similarity=0.323  Sum_probs=40.2

Q ss_pred             chhhHHHHHHHHHHHHHhCCcCCCceEEEeccchHHHHHHHHHHHHHHhcCCChhhhcCcEEEEcC
Q psy14377        217 GESCVNDVAGLLASLRITKTRLSDNTILFQGAGEASLGIADLCVMAMQKEGTSEQDARDKIWMVDS  282 (848)
Q Consensus       217 GTA~V~~lAgll~Al~~tg~~l~d~riv~~GAGaAg~gia~ll~~~m~~~G~s~~eA~~~i~~vD~  282 (848)
                      |...|. -|++--|.+.-+ .|++.+|+|+|||..|..+++.|...    |      .++++++.+
T Consensus         3 g~vSv~-~aAv~la~~~~~-~l~~~~ilviGaG~~g~~v~~~L~~~----g------~~~i~v~nR   56 (159)
T d1gpja2           3 GAVSIG-SAAVELAERELG-SLHDKTVLVVGAGEMGKTVAKSLVDR----G------VRAVLVANR   56 (159)
T ss_dssp             SCCSHH-HHHHHHHHHHHS-CCTTCEEEEESCCHHHHHHHHHHHHH----C------CSEEEEECS
T ss_pred             CcccHH-HHHHHHHHHHhC-CcccCeEEEECCCHHHHHHHHHHHhc----C------CcEEEEEcC
Confidence            344444 555555666666 79999999999999999999987765    7      457887554

>d1vi2a1 c.2.1.7 (A:107-288) Putative shikimate dehydrogenase YdiB {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Putative shikimate dehydrogenase YdiB
species: Escherichia coli [TaxId: 562]

Probab=95.01  E-value=0.019  Score=53.68  Aligned_cols=50  Identities=24%  Similarity=0.392  Sum_probs=42.3

Q ss_pred             HHHHHHHHHHHhCCcCCCceEEEeccchHHHHHHHHHHHHHHhcCCChhhhcCcEEEEcC
Q psy14377        223 DVAGLLASLRITKTRLSDNTILFQGAGEASLGIADLCVMAMQKEGTSEQDARDKIWMVDS  282 (848)
Q Consensus       223 ~lAgll~Al~~tg~~l~d~riv~~GAGaAg~gia~ll~~~m~~~G~s~~eA~~~i~~vD~  282 (848)
                      |-.|++.+++-.|.++++.+++|+|||.|+.+|+..+..    .|      .++|+++++
T Consensus         1 D~~Gf~~~l~~~~~~l~~k~vlIlGaGGaarai~~al~~----~g------~~~i~i~nR   50 (182)
T d1vi2a1           1 DGTGHIRAIKESGFDIKGKTMVLLGAGGASTAIGAQGAI----EG------LKEIKLFNR   50 (182)
T ss_dssp             HHHHHHHHHHHTTCCCTTCEEEEECCSHHHHHHHHHHHH----TT------CSEEEEEEC
T ss_pred             CHHHHHHHHHHcCCCcCCCEEEEECCcHHHHHHHHHHhh----cC------CceEeeecc
Confidence            356899999999999999999999999998888765554    47      578999886

>d1gpja2 c.2.1.7 (A:144-302) Glutamyl tRNA-reductase middle domain {Archaeon Methanopyrus kandleri [TaxId: 2320]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Glutamyl tRNA-reductase middle domain
species: Archaeon Methanopyrus kandleri [TaxId: 2320]

Probab=94.77  E-value=0.0091  Score=55.59  Aligned_cols=93  Identities=19%  Similarity=0.191  Sum_probs=65.2

Q ss_pred             chHHHHHHHHHHHHHhhhCCcCCCceEEecCcchhhHHHHHHHHHHHhcccccccccCceecCCCCCCch--HHHhhhc-
Q psy14377        684 QGTASVAVAGLLASLRITKTRLSDNTILFQGAGEGTASVAVAGLLASLRITKTRLSDNTILFQGAGEGTA--SVAIAGL-  760 (848)
Q Consensus       684 QGTaaV~LAgllaAlr~t~~~l~d~riv~~GAG~A~~g~giA~ll~~~~~~~~~~~d~g~i~~~r~~~~~--~~~~~~~-  760 (848)
                      +|.-+|+-|++=-|.+.-+ .|++.+++++|||..  |-.+++.|...+.++..+++       |+..-+  -....|. 
T Consensus         2 ~g~vSv~~aAv~la~~~~~-~l~~~~ilviGaG~~--g~~v~~~L~~~g~~~i~v~n-------Rt~~ka~~l~~~~~~~   71 (159)
T d1gpja2           2 EGAVSIGSAAVELAERELG-SLHDKTVLVVGAGEM--GKTVAKSLVDRGVRAVLVAN-------RTYERAVELARDLGGE   71 (159)
T ss_dssp             CSCCSHHHHHHHHHHHHHS-CCTTCEEEEESCCHH--HHHHHHHHHHHCCSEEEEEC-------SSHHHHHHHHHHHTCE
T ss_pred             CCcccHHHHHHHHHHHHhC-CcccCeEEEECCCHH--HHHHHHHHHhcCCcEEEEEc-------CcHHHHHHHHHhhhcc
Confidence            4666677777766777776 699999999999999  99999999998877766554       221111  1222232 


Q ss_pred             cccchhhccccCCCceEEeecCCCcc
Q psy14377        761 LASLRITKTRLSDNTILFQGSGEGTA  786 (848)
Q Consensus       761 ~~~~r~~~~~~~~~~~~~~~s~~~~~  786 (848)
                      ..+--.+.+.+.++||.|...+-+..
T Consensus        72 ~~~~~~~~~~l~~~Divi~atss~~~   97 (159)
T d1gpja2          72 AVRFDELVDHLARSDVVVSATAAPHP   97 (159)
T ss_dssp             ECCGGGHHHHHHTCSEEEECCSSSSC
T ss_pred             cccchhHHHHhccCCEEEEecCCCCc
Confidence            33444667788999999988765543

>d1pjca1 c.2.1.4 (A:136-303) L-alanine dehydrogenase {Phormidium lapideum [TaxId: 32060]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: L-alanine dehydrogenase
species: Phormidium lapideum [TaxId: 32060]

Probab=94.21  E-value=0.019  Score=54.70  Aligned_cols=92  Identities=13%  Similarity=0.265  Sum_probs=67.2

Q ss_pred             CCCceEEEeccchhHHHHHHHHHHHHHhcCCCccccCCeEEEEcCCCccccCCCCCCCChhhhhhcccCC----CCCCHH
Q psy14377         12 LSDNTILFQGAGEASLGIADLCVMAMQKEGTSEQDARDKIWMVDSKGLIVKDRPEGGVTGHKVHYAKKHA----PVKNLA   87 (848)
Q Consensus        12 i~d~kiV~~GAGaA~ia~a~L~~~am~~~G~~~e~~~~ni~m~DskGvi~~~R~d~~l~~~k~~~a~~~~----~~~tL~   87 (848)
                      +.-.|++++|||-||...++..+    .+|.       +++.+|.+       .+ .+...+..|.....    ....|+
T Consensus        30 v~pa~V~ViGaGvaG~~A~~~A~----~lGA-------~V~~~D~~-------~~-~l~~l~~~~~~~~~~~~~~~~~l~   90 (168)
T d1pjca1          30 VKPGKVVILGGGVVGTEAAKMAV----GLGA-------QVQIFDIN-------VE-RLSYLETLFGSRVELLYSNSAEIE   90 (168)
T ss_dssp             BCCCEEEEECCSHHHHHHHHHHH----HTTC-------EEEEEESC-------HH-HHHHHHHHHGGGSEEEECCHHHHH
T ss_pred             CCCcEEEEECCChHHHHHHHHHh----hCCC-------EEEEEeCc-------HH-HHHHHHHhhcccceeehhhhhhHH
Confidence            46789999999999999999887    5885       78999972       22 13333444432111    223688


Q ss_pred             HHhcccCCCchhh----------------hhccCCccccccccCC-cccccccc
Q psy14377         88 DVVKTVKPSILIE----------------ELKGLSQRDFLSSWLN-RGPCLNCW  124 (848)
Q Consensus        88 ea~~~s~~~v~~g----------------~vk~M~~~piifA~sn-~~~~i~at  124 (848)
                      ++++.  +|++++                ||+.|.+-.+|.=+|- .+-|+.-|
T Consensus        91 ~~~~~--aDivI~aalipG~~aP~lIt~~mv~~Mk~GSVIVDvaidqGG~~Ets  142 (168)
T d1pjca1          91 TAVAE--ADLLIGAVLVPGRRAPILVPASLVEQMRTGSVIVDVAVDQGGCVETL  142 (168)
T ss_dssp             HHHHT--CSEEEECCCCTTSSCCCCBCHHHHTTSCTTCEEEETTCTTCCSBTTC
T ss_pred             Hhhcc--CcEEEEeeecCCcccCeeecHHHHhhcCCCcEEEEeecCCCCccccC
Confidence            88886  677777                9999999999988887 66688776

>d1b5qa1 c.3.1.2 (A:5-293,A:406-463) Polyamine oxidase {Maize (Zea mays) [TaxId: 4577]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Polyamine oxidase
species: Maize (Zea mays) [TaxId: 4577]

Probab=93.60  E-value=0.031  Score=49.36  Aligned_cols=32  Identities=16%  Similarity=0.364  Sum_probs=27.5

Q ss_pred             eEEEeccchhHHHHHHHHHHHHHhcCCCccccCCeEEEEcCC
Q psy14377         16 TILFQGAGEASLGIADLCVMAMQKEGTSEQDARDKIWMVDSK   57 (848)
Q Consensus        16 kiV~~GAGaA~ia~a~L~~~am~~~G~~~e~~~~ni~m~Dsk   57 (848)
                      ||+|+|||.||++||..|.+    .|.      ++|.++++.
T Consensus         2 ~V~IIGaG~aGL~aA~~L~~----~G~------~~V~vlE~~   33 (347)
T d1b5qa1           2 RVIVVGAGMSGISAAKRLSE----AGI------TDLLILEAT   33 (347)
T ss_dssp             CEEEECCBHHHHHHHHHHHH----TTC------CCEEEECSS
T ss_pred             CEEEECCcHHHHHHHHHHHh----CCC------CcEEEEECC
Confidence            79999999999999998874    676      378998875

>d1seza1 c.3.1.2 (A:13-329,A:442-497) Protoporphyrinogen oxidase {Tobacco (Nicotiana tabacum) [TaxId: 4097]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Protoporphyrinogen oxidase
species: Tobacco (Nicotiana tabacum) [TaxId: 4097]

Probab=92.90  E-value=0.045  Score=49.91  Aligned_cols=31  Identities=19%  Similarity=0.258  Sum_probs=26.7

Q ss_pred             eEEEeccchhHHHHHHHHHHHHHhcCCCccccCCeEEEEcCC
Q psy14377         16 TILFQGAGEASLGIADLCVMAMQKEGTSEQDARDKIWMVDSK   57 (848)
Q Consensus        16 kiV~~GAGaA~ia~a~L~~~am~~~G~~~e~~~~ni~m~Dsk   57 (848)
                      ||+|+|||.||++||..|.    +.|.       ++.++|+.
T Consensus         3 kV~IIGaG~aGL~aA~~La----~~G~-------~V~vlE~~   33 (373)
T d1seza1           3 RVAVIGAGVSGLAAAYKLK----IHGL-------NVTVFEAE   33 (373)
T ss_dssp             EEEEECCSHHHHHHHHHHH----TTSC-------EEEEECSS
T ss_pred             EEEEECcCHHHHHHHHHHH----hCCC-------CEEEEeCC
Confidence            6999999999999999887    4674       78999874

>d1b26a1 c.2.1.7 (A:179-412) Glutamate dehydrogenase {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Glutamate dehydrogenase
species: Thermotoga maritima [TaxId: 2336]

Probab=92.57  E-value=0.14  Score=50.45  Aligned_cols=98  Identities=18%  Similarity=0.135  Sum_probs=66.3

Q ss_pred             HHHHHHHHHHHHHhhhCCcCCCceEEecCcchhhHHHHHHHHHHH-hccccccccc-CceecCCCCCCchHHHhhhcccc
Q psy14377        686 TASVAVAGLLASLRITKTRLSDNTILFQGAGEGTASVAVAGLLAS-LRITKTRLSD-NTILFQGAGEGTASVAIAGLLAS  763 (848)
Q Consensus       686 TaaV~LAgllaAlr~t~~~l~d~riv~~GAG~A~~g~giA~ll~~-~~~~~~~~~d-~g~i~~~r~~~~~~~~~~~~~~~  763 (848)
                      ||-=+.-++-.+++..+.+|++.||+|-|.|.-  |...|+.|.. .+.+-+.++| +|.+|.  ++|.+..+....+..
T Consensus        10 Tg~Gv~~~~~~~~~~~~~~l~g~~vaIqG~GnV--G~~~a~~L~~e~Ga~vv~vsd~~G~i~~--~~Gld~~~l~~~~~~   85 (234)
T d1b26a1          10 TGRGVKVCAGLAMDVLGIDPKKATVAVQGFGNV--GQFAALLISQELGSKVVAVSDSRGGIYN--PEGFDVEELIRYKKE   85 (234)
T ss_dssp             HHHHHHHHHHHHHHHTTCCTTTCEEEEECCSHH--HHHHHHHHHHHHCCEEEEEEETTEEEEC--TTCCCHHHHHHHHHH
T ss_pred             hhHHHHHHHHHHHHHcCCCcCCCEEEEECCCHH--HHHHHHHHHHhcCCceEEeecCCCcEEe--ccccchHHHHHHHHh
Confidence            554445566677888899999999999999999  9999999964 5777677888 998885  455543222111111


Q ss_pred             chhh-----------ccccC-CCceEEeecCCCcch
Q psy14377        764 LRIT-----------KTRLS-DNTILFQGSGEGTAS  787 (848)
Q Consensus       764 ~r~~-----------~~~~~-~~~~~~~~s~~~~~~  787 (848)
                      .+..           ++.++ ++|||+=-.-+++-.
T Consensus        86 ~~~~~~~~~~~~~~~~~~~~~~~DI~~PcA~~~~I~  121 (234)
T d1b26a1          86 HGTVVTYPKGERITNEELLELDVDILVPAALEGAIH  121 (234)
T ss_dssp             SSCSTTCSSCEEECHHHHHTSCCSEEEECSCTTCBC
T ss_pred             hcceeccccceeeccccccccccceeecchhccccc
Confidence            1111           12222 899999776666544

>d1nyta1 c.2.1.7 (A:102-271) Shikimate 5-dehydrogenase AroE {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Shikimate 5-dehydrogenase AroE
species: Escherichia coli [TaxId: 562]

Probab=92.43  E-value=0.1  Score=47.97  Aligned_cols=48  Identities=25%  Similarity=0.207  Sum_probs=39.5

Q ss_pred             HHHHHHHHHHhCCcCCCceEEEeccchHHHHHHHHHHHHHHhcCCChhhhcCcEEEEcC
Q psy14377        224 VAGLLASLRITKTRLSDNTILFQGAGEASLGIADLCVMAMQKEGTSEQDARDKIWMVDS  282 (848)
Q Consensus       224 lAgll~Al~~tg~~l~d~riv~~GAGaAg~gia~ll~~~m~~~G~s~~eA~~~i~~vD~  282 (848)
                      --|++.+|+-.+..+++++++|+|||.|+.+|+-.|.+    .|      . +|++++|
T Consensus         2 g~Gf~~~l~~~~~~~~~k~vlIlGaGGaarai~~al~~----~g------~-~i~I~nR   49 (170)
T d1nyta1           2 GVGLLSDLERLSFIRPGLRILLIGAGGASRGVLLPLLS----LD------C-AVTITNR   49 (170)
T ss_dssp             HHHHHHHHHHHTCCCTTCEEEEECCSHHHHHHHHHHHH----TT------C-EEEEECS
T ss_pred             HhHHHHHHHHcCCCCCCCEEEEECCcHHHHHHHHHhcc----cc------e-EEEeccc
Confidence            45899999999999999999999999999999876554    46      2 4887654

>d1gtea4 c.4.1.1 (A:184-287,A:441-532) Dihydropyrimidine dehydrogenase, domain 2 {Pig (Sus scrofa) [TaxId: 9823]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: N-terminal domain of adrenodoxin reductase-like
domain: Dihydropyrimidine dehydrogenase, domain 2
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=91.93  E-value=0.074  Score=48.06  Aligned_cols=36  Identities=28%  Similarity=0.421  Sum_probs=29.4

Q ss_pred             ceEEEeccchhHHHHHHHHHHHHHhcCCCccccCCeEEEEcCCCcc
Q psy14377         15 NTILFQGAGEASLGIADLCVMAMQKEGTSEQDARDKIWMVDSKGLI   60 (848)
Q Consensus        15 ~kiV~~GAGaA~ia~a~L~~~am~~~G~~~e~~~~ni~m~DskGvi   60 (848)
                      -||+|+|||.||+.||.-|.    +.|.+      +|.++|+...+
T Consensus         5 ~kVaIIGaGpaGl~aA~~l~----~~G~~------~V~v~E~~~~~   40 (196)
T d1gtea4           5 AKIALLGAGPASISCASFLA----RLGYS------DITIFEKQEYV   40 (196)
T ss_dssp             CCEEEECCSHHHHHHHHHHH----HTTCC------CEEEEESSSSC
T ss_pred             CEEEEECChHHHHHHHHHHH----HCCCC------eEEEEEecCcc
Confidence            48999999999999999887    48874      58888875443

>d2dw4a2 c.3.1.2 (A:274-654,A:764-831) Lysine-specific histone demethylase 1, LSD1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Lysine-specific histone demethylase 1, LSD1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=91.74  E-value=0.097  Score=47.97  Aligned_cols=34  Identities=15%  Similarity=0.321  Sum_probs=28.3

Q ss_pred             CceEEEeccchhHHHHHHHHHHHHHhcCCCccccCCeEEEEcCCC
Q psy14377         14 DNTILFQGAGEASLGIADLCVMAMQKEGTSEQDARDKIWMVDSKG   58 (848)
Q Consensus        14 d~kiV~~GAGaA~ia~a~L~~~am~~~G~~~e~~~~ni~m~DskG   58 (848)
                      ..||||+|||-||++||..|.+    .|.       +|.++....
T Consensus         5 ~~kViVIGaG~aGL~aA~~L~~----~G~-------~V~VlEa~~   38 (449)
T d2dw4a2           5 TGKVIIIGSGVSGLAAARQLQS----FGM-------DVTLLEARD   38 (449)
T ss_dssp             CCEEEEECCBHHHHHHHHHHHH----TTC-------EEEEECSSS
T ss_pred             CCcEEEECCCHHHHHHHHHHHh----CCC-------CEEEEeCCC
Confidence            4689999999999999999874    674       688887753

>d1cjca2 c.4.1.1 (A:6-106,A:332-460) Adrenodoxin reductase of mitochondrial p450 systems {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: N-terminal domain of adrenodoxin reductase-like
domain: Adrenodoxin reductase of mitochondrial p450 systems
species: Cow (Bos taurus) [TaxId: 9913]

Probab=91.61  E-value=0.073  Score=49.94  Aligned_cols=35  Identities=14%  Similarity=0.138  Sum_probs=27.5

Q ss_pred             ceEEEeccchhHHHHHHHHHHHHHhcCCCccccCCeEEEEcCCC
Q psy14377         15 NTILFQGAGEASLGIADLCVMAMQKEGTSEQDARDKIWMVDSKG   58 (848)
Q Consensus        15 ~kiV~~GAGaA~ia~a~L~~~am~~~G~~~e~~~~ni~m~DskG   58 (848)
                      -||+|+|||.||++||.-|..    .|..     -+|.|+|+.-
T Consensus         2 ~kv~iIGaGpaGl~aA~~L~~----~~~~-----~~V~v~e~~~   36 (230)
T d1cjca2           2 PQICVVGSGPAGFYTAQHLLK----HHSR-----AHVDIYEKQL   36 (230)
T ss_dssp             CEEEEECCSHHHHHHHHHHHH----HCSS-----CEEEEECSSS
T ss_pred             CeEEEECccHHHHHHHHHHHh----cCCC-----CeEEEEeCCC
Confidence            389999999999999997774    3322     2799999763

>d1npya1 c.2.1.7 (A:103-269) Shikimate 5-dehydrogenase-like protein HI0607 {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Shikimate 5-dehydrogenase-like protein HI0607
species: Haemophilus influenzae [TaxId: 727]

Probab=91.35  E-value=0.13  Score=47.33  Aligned_cols=48  Identities=8%  Similarity=0.216  Sum_probs=38.7

Q ss_pred             HHHHHHHHHHhCCcCCCceEEEeccchHHHHHHHHHHHHHHhcCCChhhhcCcEEEEcC
Q psy14377        224 VAGLLASLRITKTRLSDNTILFQGAGEASLGIADLCVMAMQKEGTSEQDARDKIWMVDS  282 (848)
Q Consensus       224 lAgll~Al~~tg~~l~d~riv~~GAGaAg~gia~ll~~~m~~~G~s~~eA~~~i~~vD~  282 (848)
                      .-|+..+++-.+.+ ++.+|+|+|||.|+.+++..|.    +.|      .++|++++|
T Consensus         2 ~~G~~~~l~~~~~~-~~~~vlIlGaGGaarai~~aL~----~~g------~~~I~I~nR   49 (167)
T d1npya1           2 YIAIVKLIEKYHLN-KNAKVIVHGSGGMAKAVVAAFK----NSG------FEKLKIYAR   49 (167)
T ss_dssp             HHHHHHHHHHTTCC-TTSCEEEECSSTTHHHHHHHHH----HTT------CCCEEEECS
T ss_pred             hHHHHHHHHHcCCC-CCCeEEEECCCHHHHHHHHHHH----HCC------CCEEEEecc
Confidence            45788899998888 7899999999999999876654    457      468888665

>d1p77a1 c.2.1.7 (A:102-272) Shikimate 5-dehydrogenase AroE {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Shikimate 5-dehydrogenase AroE
species: Haemophilus influenzae [TaxId: 727]

Probab=90.90  E-value=0.14  Score=47.44  Aligned_cols=49  Identities=22%  Similarity=0.317  Sum_probs=39.9

Q ss_pred             HHHHHHHHHHHhCCcCCCceEEEeccchHHHHHHHHHHHHHHhcCCChhhhcCcEEEEcC
Q psy14377        223 DVAGLLASLRITKTRLSDNTILFQGAGEASLGIADLCVMAMQKEGTSEQDARDKIWMVDS  282 (848)
Q Consensus       223 ~lAgll~Al~~tg~~l~d~riv~~GAGaAg~gia~ll~~~m~~~G~s~~eA~~~i~~vD~  282 (848)
                      |-.|++.+++-.+..+++.+++|+|||.|+.+++..|.+     |      .++|++++|
T Consensus         1 D~~Gf~~~l~~~~~~~~~k~vlIlGaGGaarai~~aL~~-----~------~~~i~I~nR   49 (171)
T d1p77a1           1 DGIGLVTDLQRLNWLRPNQHVLILGAGGATKGVLLPLLQ-----A------QQNIVLANR   49 (171)
T ss_dssp             HHHHHHHHHHHTTCCCTTCEEEEECCSHHHHTTHHHHHH-----T------TCEEEEEES
T ss_pred             CHHHHHHHHHHcCCCCCCCEEEEECCcHHHHHHHHHHcc-----c------Cceeeeccc
Confidence            346899999988999999999999999999998876543     3      357888765

>d2iida1 c.3.1.2 (A:4-319,A:433-486) L-aminoacid oxidase {Malayan pit viper (Calloselasma rhodostoma) [TaxId: 8717]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: L-aminoacid oxidase
species: Malayan pit viper (Calloselasma rhodostoma) [TaxId: 8717]

Probab=90.64  E-value=0.1  Score=48.98  Aligned_cols=31  Identities=23%  Similarity=0.381  Sum_probs=27.2

Q ss_pred             eEEEeccchhHHHHHHHHHHHHHhcCCCccccCCeEEEEcCC
Q psy14377         16 TILFQGAGEASLGIADLCVMAMQKEGTSEQDARDKIWMVDSK   57 (848)
Q Consensus        16 kiV~~GAGaA~ia~a~L~~~am~~~G~~~e~~~~ni~m~Dsk   57 (848)
                      ||+|+|||.||++||..|.+    .|.       +|.++|+.
T Consensus        32 kV~IIGaG~aGLsaA~~L~~----~G~-------~V~vlE~~   62 (370)
T d2iida1          32 HVVIVGAGMAGLSAAYVLAG----AGH-------QVTVLEAS   62 (370)
T ss_dssp             EEEEECCBHHHHHHHHHHHH----HTC-------EEEEECSS
T ss_pred             eEEEECCCHHHHHHHHHHHH----CCC-------CEEEEeCC
Confidence            89999999999999998874    674       78999975

>d2voua1 c.3.1.2 (A:2-163,A:292-394) Dihydroxypyridine hydroxylase DhpH {Arthrobacter nicotinovorans [TaxId: 29320]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Dihydroxypyridine hydroxylase DhpH
species: Arthrobacter nicotinovorans [TaxId: 29320]

Probab=90.52  E-value=0.11  Score=48.53  Aligned_cols=32  Identities=16%  Similarity=0.153  Sum_probs=27.5

Q ss_pred             CceEEEeccchhHHHHHHHHHHHHHhcCCCccccCCeEEEEcC
Q psy14377         14 DNTILFQGAGEASLGIADLCVMAMQKEGTSEQDARDKIWMVDS   56 (848)
Q Consensus        14 d~kiV~~GAGaA~ia~a~L~~~am~~~G~~~e~~~~ni~m~Ds   56 (848)
                      --||||+|||.||+++|.+|.+    .|+       ++.++|+
T Consensus         4 ~~kV~IiGaG~aGl~~A~~L~~----~G~-------~v~v~Er   35 (265)
T d2voua1           4 TDRIAVVGGSISGLTAALMLRD----AGV-------DVDVYER   35 (265)
T ss_dssp             CSEEEEECCSHHHHHHHHHHHH----TTC-------EEEEECS
T ss_pred             CCcEEEECcCHHHHHHHHHHHH----CCC-------CEEEEeC
Confidence            4689999999999999998874    786       6888886

>d1vi2a1 c.2.1.7 (A:107-288) Putative shikimate dehydrogenase YdiB {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Putative shikimate dehydrogenase YdiB
species: Escherichia coli [TaxId: 562]

Probab=90.47  E-value=0.13  Score=47.75  Aligned_cols=87  Identities=20%  Similarity=0.235  Sum_probs=60.9

Q ss_pred             HHHHHHHhhhCCcCCCceEEecCcchhhHHHHHHHHHHHhcccccccccCceecCCCCCCchH----HHhhhc-------
Q psy14377        692 AGLLASLRITKTRLSDNTILFQGAGEGTASVAVAGLLASLRITKTRLSDNTILFQGAGEGTAS----VAIAGL-------  760 (848)
Q Consensus       692 AgllaAlr~t~~~l~d~riv~~GAG~A~~g~giA~ll~~~~~~~~~~~d~g~i~~~r~~~~~~----~~~~~~-------  760 (848)
                      .|++.+++-.+.++++.+++|+|||.|  +-+|+..+....+++..+.+.      ..+..+.    .++.+-       
T Consensus         3 ~Gf~~~l~~~~~~l~~k~vlIlGaGGa--arai~~al~~~g~~~i~i~nR------~~~~~~~~~~l~~~~~~~~~~~~~   74 (182)
T d1vi2a1           3 TGHIRAIKESGFDIKGKTMVLLGAGGA--STAIGAQGAIEGLKEIKLFNR------RDEFFDKALAFAQRVNENTDCVVT   74 (182)
T ss_dssp             HHHHHHHHHTTCCCTTCEEEEECCSHH--HHHHHHHHHHTTCSEEEEEEC------SSTTHHHHHHHHHHHHHHSSCEEE
T ss_pred             HHHHHHHHHcCCCcCCCEEEEECCcHH--HHHHHHHHhhcCCceEeeecc------chHHHHHHHHHHHHHHhhcCcceE
Confidence            588999999999999999999999999  999999999988777664441      1222221    111111       


Q ss_pred             ---cccchhhccccCCCceEEeecCCCcc
Q psy14377        761 ---LASLRITKTRLSDNTILFQGSGEGTA  786 (848)
Q Consensus       761 ---~~~~r~~~~~~~~~~~~~~~s~~~~~  786 (848)
                         ..+...+.+.+.++|+.+-.+.-|..
T Consensus        75 ~~~~~~~~~~~~~~~~~diiIN~Tp~G~~  103 (182)
T d1vi2a1          75 VTDLADQQAFAEALASADILTNGTKVGMK  103 (182)
T ss_dssp             EEETTCHHHHHHHHHTCSEEEECSSTTST
T ss_pred             eeecccccchhhhhcccceeccccCCccc
Confidence               11223455667899999988776644

>d1c0pa1 c.4.1.2 (A:999-1193,A:1289-1361) D-aminoacid oxidase, N-terminal domain {Rhodotorula gracilis [TaxId: 5286]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: D-aminoacid oxidase, N-terminal domain
domain: D-aminoacid oxidase, N-terminal domain
species: Rhodotorula gracilis [TaxId: 5286]

Probab=90.32  E-value=0.15  Score=46.93  Aligned_cols=35  Identities=17%  Similarity=0.268  Sum_probs=29.1

Q ss_pred             CCceEEEeccchhHHHHHHHHHHHHHhcCCCccccCCeEEEEcCCC
Q psy14377         13 SDNTILFQGAGEASLGIADLCVMAMQKEGTSEQDARDKIWMVDSKG   58 (848)
Q Consensus        13 ~d~kiV~~GAGaA~ia~a~L~~~am~~~G~~~e~~~~ni~m~DskG   58 (848)
                      +..||||+|||.||+++|-.|.+    .|.       +|.++|+..
T Consensus         5 ~~~kVvVIGaGiaGl~~A~~L~~----~G~-------~V~vier~~   39 (268)
T d1c0pa1           5 SQKRVVVLGSGVIGLSSALILAR----KGY-------SVHILARDL   39 (268)
T ss_dssp             CSCEEEEECCSHHHHHHHHHHHH----TTC-------EEEEEESSC
T ss_pred             CCCcEEEECccHHHHHHHHHHHH----CCC-------CEEEEeCCC
Confidence            34589999999999999998873    674       689999864

>d2ivda1 c.3.1.2 (A:10-306,A:415-464) Protoporphyrinogen oxidase {Myxococcus xanthus [TaxId: 34]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Protoporphyrinogen oxidase
species: Myxococcus xanthus [TaxId: 34]

Probab=90.26  E-value=0.12  Score=47.34  Aligned_cols=32  Identities=22%  Similarity=0.341  Sum_probs=27.4

Q ss_pred             ceEEEeccchhHHHHHHHHHHHHHhcCCCccccCCeEEEEcCC
Q psy14377         15 NTILFQGAGEASLGIADLCVMAMQKEGTSEQDARDKIWMVDSK   57 (848)
Q Consensus        15 ~kiV~~GAGaA~ia~a~L~~~am~~~G~~~e~~~~ni~m~Dsk   57 (848)
                      .||+|+|||.||++||..|.    +.|.       +|.++++.
T Consensus         1 m~V~IIGaG~aGL~aA~~L~----~~G~-------~V~vlE~~   32 (347)
T d2ivda1           1 MNVAVVGGGISGLAVAHHLR----SRGT-------DAVLLESS   32 (347)
T ss_dssp             CCEEEECCBHHHHHHHHHHH----TTTC-------CEEEECSS
T ss_pred             CeEEEECCCHHHHHHHHHHH----hCCC-------CEEEEecC
Confidence            48999999999999999887    4674       68899875

>d2jfga1 c.5.1.1 (A:1-93) UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase MurD {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: MurCD N-terminal domain
superfamily: MurCD N-terminal domain
family: MurCD N-terminal domain
domain: UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase MurD
species: Escherichia coli [TaxId: 562]

Probab=90.22  E-value=0.13  Score=42.99  Aligned_cols=34  Identities=18%  Similarity=0.379  Sum_probs=28.9

Q ss_pred             CCCceEEEeccchhHHHHHHHHHHHHHhcCCCccccCCeEEEEcC
Q psy14377         12 LSDNTILFQGAGEASLGIADLCVMAMQKEGTSEQDARDKIWMVDS   56 (848)
Q Consensus        12 i~d~kiV~~GAGaA~ia~a~L~~~am~~~G~~~e~~~~ni~m~Ds   56 (848)
                      +++-||+++|+|-+|+++|++|..    .|.       +++++|.
T Consensus         3 ~~~K~v~ViGlG~sG~s~a~~L~~----~g~-------~v~~~D~   36 (93)
T d2jfga1           3 YQGKNVVIIGLGLTGLSCVDFFLA----RGV-------TPRVMDT   36 (93)
T ss_dssp             CTTCCEEEECCSHHHHHHHHHHHH----TTC-------CCEEEES
T ss_pred             cCCCEEEEEeECHHHHHHHHHHHH----CCC-------EEEEeeC
Confidence            456689999999999999999984    774       6888887

>d1l7da1 c.2.1.4 (A:144-326) Nicotinamide nucleotide transhydrogenase dI component {Rhodospirillum rubrum [TaxId: 1085]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: Nicotinamide nucleotide transhydrogenase dI component
species: Rhodospirillum rubrum [TaxId: 1085]

Probab=89.85  E-value=0.25  Score=47.31  Aligned_cols=92  Identities=14%  Similarity=0.145  Sum_probs=58.3

Q ss_pred             CCCceEEEeccchhHHHHHHHHHHHHHhcCCCccccCCeEEEEcCCCccccCCCCCCCChhhhh----------------
Q psy14377         12 LSDNTILFQGAGEASLGIADLCVMAMQKEGTSEQDARDKIWMVDSKGLIVKDRPEGGVTGHKVH----------------   75 (848)
Q Consensus        12 i~d~kiV~~GAGaA~ia~a~L~~~am~~~G~~~e~~~~ni~m~DskGvi~~~R~d~~l~~~k~~----------------   75 (848)
                      +.-.|+|++|||-||...++.-+    .+|.       +++.+|.+    ..|    +.+-+..                
T Consensus        27 V~pa~VvViGaGvaG~~Aa~~A~----~lGA-------~V~v~D~~----~~~----~~~l~~l~~~~i~~~~~~~~~~~   87 (183)
T d1l7da1          27 VPPARVLVFGVGVAGLQAIATAK----RLGA-------VVMATDVR----AAT----KEQVESLGGKFITVDDEAMKTAE   87 (183)
T ss_dssp             ECCCEEEEECCSHHHHHHHHHHH----HTTC-------EEEEECSC----STT----HHHHHHTTCEECCC---------
T ss_pred             cCCcEEEEEcCcHHHHHHHHHHH----HcCC-------EEEEEecc----HHH----HHHHHHhhcceEEEecccccccc
Confidence            44579999999999999999777    4884       88999962    111    1111211                


Q ss_pred             ----hcccCC------CCCCHHHHhcccCCCchhh----------------hhccCCccccccccCC-cccccccc
Q psy14377         76 ----YAKKHA------PVKNLADVVKTVKPSILIE----------------ELKGLSQRDFLSSWLN-RGPCLNCW  124 (848)
Q Consensus        76 ----~a~~~~------~~~tL~ea~~~s~~~v~~g----------------~vk~M~~~piifA~sn-~~~~i~at  124 (848)
                          ||++-.      ....|.++++.  +|++++                |++.|.+-.+|.=+|- .+-|+..|
T Consensus        88 ~~~gyA~~~s~~~~~~~~~~l~~~l~~--aDlVI~talipG~~aP~lit~~mv~~Mk~GSVIVDvaidqGGn~Ets  161 (183)
T d1l7da1          88 TAGGYAKEMGEEFRKKQAEAVLKELVK--TDIAITTALIPGKPAPVLITEEMVTKMKPGSVIIDLAVEAGGNCPLS  161 (183)
T ss_dssp             --------------CCHHHHHHHHHTT--CSEEEECCCCTTSCCCCCSCHHHHTTSCTTCEEEETTGGGTCSSTTC
T ss_pred             ccccchhhcCHHHHHHHHHHHHHHHHh--hhhheeeeecCCcccceeehHHHHHhcCCCcEEEEEeecCCCccccC
Confidence                222110      01124555554  677665                9999999999988877 66676644

>d2gv8a1 c.3.1.5 (A:3-180,A:288-444) Flavin-dependent monoxygenase SPBP16F5.08c {Schizosaccharomyces pombe [TaxId: 4896]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Flavin-dependent monoxygenase SPBP16F5.08c
species: Schizosaccharomyces pombe [TaxId: 4896]

Probab=89.58  E-value=0.15  Score=50.78  Aligned_cols=34  Identities=26%  Similarity=0.404  Sum_probs=27.0

Q ss_pred             eEEEeccchhHHHHHHHHHHHHHhcCCCccccCCeEEEEcCCC
Q psy14377         16 TILFQGAGEASLGIADLCVMAMQKEGTSEQDARDKIWMVDSKG   58 (848)
Q Consensus        16 kiV~~GAGaA~ia~a~L~~~am~~~G~~~e~~~~ni~m~DskG   58 (848)
                      ||+|+|||.||++||.-|.    +.|..     .+|.+++++.
T Consensus         6 rVaIIGaG~sGl~~A~~L~----~~~~~-----~~v~vfEk~~   39 (335)
T d2gv8a1           6 KIAIIGAGPSGLVTAKALL----AEKAF-----DQVTLFERRG   39 (335)
T ss_dssp             EEEEECCSHHHHHHHHHHH----TTTCC-----SEEEEECSSS
T ss_pred             eEEEECcCHHHHHHHHHHH----HhCCC-----CCEEEEECCC
Confidence            5999999999999998766    35543     3788888864

>d1fcda1 c.3.1.5 (A:1-114,A:256-327) Flavocytochrome c sulfide dehydrogenase, FCSD, flavin-binding subunit {Purple phototrophic bacterium (Chromatium vinosum) [TaxId: 1049]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Flavocytochrome c sulfide dehydrogenase, FCSD, flavin-binding subunit
species: Purple phototrophic bacterium (Chromatium vinosum) [TaxId: 1049]

Probab=89.34  E-value=0.17  Score=44.19  Aligned_cols=36  Identities=11%  Similarity=0.199  Sum_probs=28.8

Q ss_pred             eEEEeccchhHHHHHHHHHHHHHhcCCCccccCCeEEEEcCCCcc
Q psy14377         16 TILFQGAGEASLGIADLCVMAMQKEGTSEQDARDKIWMVDSKGLI   60 (848)
Q Consensus        16 kiV~~GAGaA~ia~a~L~~~am~~~G~~~e~~~~ni~m~DskGvi   60 (848)
                      ||||+|||.||+.+|.-|.+    .|-+     -+|.++|+.--.
T Consensus         4 rivIvGgG~~G~e~A~~l~~----~~~~-----~~Vtlie~~~~~   39 (186)
T d1fcda1           4 KVVVVGGGTGGATAAKYIKL----ADPS-----IEVTLIEPNTDY   39 (186)
T ss_dssp             EEEEECCSHHHHHHHHHHHH----HCTT-----SEEEEECSCSCE
T ss_pred             cEEEECccHHHHHHHHHHHH----cCCC-----CcEEEEECCCcc
Confidence            89999999999999998774    6643     379998876543

>d1nvta1 c.2.1.7 (A:111-287) Shikimate 5-dehydrogenase AroE {Archaeon Methanococcus jannaschii [TaxId: 2190]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Shikimate 5-dehydrogenase AroE
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

Probab=88.80  E-value=0.23  Score=45.74  Aligned_cols=48  Identities=25%  Similarity=0.292  Sum_probs=37.4

Q ss_pred             HHHHHHHHHHHhCCcCCCceEEEeccchHHHHHHHHHHHHHHhcCCChhhhcCcEEEEcC
Q psy14377        223 DVAGLLASLRITKTRLSDNTILFQGAGEASLGIADLCVMAMQKEGTSEQDARDKIWMVDS  282 (848)
Q Consensus       223 ~lAgll~Al~~tg~~l~d~riv~~GAGaAg~gia~ll~~~m~~~G~s~~eA~~~i~~vD~  282 (848)
                      |-.|++.+++-.+.++++.+++|+|||.++.+++-.|    .  +      ..+|++++|
T Consensus         1 D~~G~~~~l~~~~~~~~~k~vlIlGaGG~arai~~aL----~--~------~~~i~I~nR   48 (177)
T d1nvta1           1 DGIGARMALEEEIGRVKDKNIVIYGAGGAARAVAFEL----A--K------DNNIIIANR   48 (177)
T ss_dssp             HHHHHHHHHHHHHCCCCSCEEEEECCSHHHHHHHHHH----T--S------SSEEEEECS
T ss_pred             CHHHHHHHHHHhCCCcCCCEEEEECCcHHHHHHHHHH----c--c------ccceeeehh
Confidence            3468999999889999999999999999888776443    2  2      237887665

>d2bcgg1 c.3.1.3 (G:5-301) Guanine nucleotide dissociation inhibitor, GDI {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: GDI-like N domain
domain: Guanine nucleotide dissociation inhibitor, GDI
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=88.77  E-value=0.18  Score=44.35  Aligned_cols=33  Identities=21%  Similarity=0.443  Sum_probs=27.6

Q ss_pred             CceEEEeccchhHHHHHHHHHHHHHhcCCCccccCCeEEEEcCC
Q psy14377         14 DNTILFQGAGEASLGIADLCVMAMQKEGTSEQDARDKIWMVDSK   57 (848)
Q Consensus        14 d~kiV~~GAGaA~ia~a~L~~~am~~~G~~~e~~~~ni~m~Dsk   57 (848)
                      +--+||+|||.+|++||..|.+    .|.       +|.++|+.
T Consensus         5 ~yDviViGaG~~Gl~~A~~La~----~G~-------~V~vlE~~   37 (297)
T d2bcgg1           5 DYDVIVLGTGITECILSGLLSV----DGK-------KVLHIDKQ   37 (297)
T ss_dssp             BCSEEEECCSHHHHHHHHHHHH----TTC-------CEEEECSS
T ss_pred             cCCEEEECcCHHHHHHHHHHHH----CCC-------CEEEEcCC
Confidence            3448999999999999999874    673       68999986

>d2jfga1 c.5.1.1 (A:1-93) UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase MurD {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: MurCD N-terminal domain
superfamily: MurCD N-terminal domain
family: MurCD N-terminal domain
domain: UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase MurD
species: Escherichia coli [TaxId: 562]

Probab=88.75  E-value=0.18  Score=41.99  Aligned_cols=35  Identities=17%  Similarity=0.328  Sum_probs=29.4

Q ss_pred             cCCCceEEEeccchHHHHHHHHHHHHHHhcCCChhhhcCcEEEEcC
Q psy14377        237 RLSDNTILFQGAGEASLGIADLCVMAMQKEGTSEQDARDKIWMVDS  282 (848)
Q Consensus       237 ~l~d~riv~~GAGaAg~gia~ll~~~m~~~G~s~~eA~~~i~~vD~  282 (848)
                      .++++||+|+|+|-.|.++|+.+...    |       .++++.|.
T Consensus         2 ~~~~K~v~ViGlG~sG~s~a~~L~~~----g-------~~v~~~D~   36 (93)
T d2jfga1           2 DYQGKNVVIIGLGLTGLSCVDFFLAR----G-------VTPRVMDT   36 (93)
T ss_dssp             CCTTCCEEEECCSHHHHHHHHHHHHT----T-------CCCEEEES
T ss_pred             CcCCCEEEEEeECHHHHHHHHHHHHC----C-------CEEEEeeC
Confidence            57889999999999999999977654    6       46888886

>d1b5qa1 c.3.1.2 (A:5-293,A:406-463) Polyamine oxidase {Maize (Zea mays) [TaxId: 4577]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Polyamine oxidase
species: Maize (Zea mays) [TaxId: 4577]

Probab=88.35  E-value=0.19  Score=44.01  Aligned_cols=32  Identities=19%  Similarity=0.389  Sum_probs=26.2

Q ss_pred             eEEEeccchHHHHHHHHHHHHHHhcCCChhhhcCcEEEEcCC
Q psy14377        242 TILFQGAGEASLGIADLCVMAMQKEGTSEQDARDKIWMVDSK  283 (848)
Q Consensus       242 riv~~GAGaAg~gia~ll~~~m~~~G~s~~eA~~~i~~vD~k  283 (848)
                      +|+|+|||.||+..|..|.++    |+      +++.++|+.
T Consensus         2 ~V~IIGaG~aGL~aA~~L~~~----G~------~~V~vlE~~   33 (347)
T d1b5qa1           2 RVIVVGAGMSGISAAKRLSEA----GI------TDLLILEAT   33 (347)
T ss_dssp             CEEEECCBHHHHHHHHHHHHT----TC------CCEEEECSS
T ss_pred             CEEEECCcHHHHHHHHHHHhC----CC------CcEEEEECC
Confidence            699999999999999987654    84      468888875

>d1lqta2 c.4.1.1 (A:2-108,A:325-456) Ferredoxin:NADP reductase FprA {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: N-terminal domain of adrenodoxin reductase-like
domain: Ferredoxin:NADP reductase FprA
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=88.35  E-value=0.1  Score=48.28  Aligned_cols=39  Identities=15%  Similarity=0.143  Sum_probs=28.9

Q ss_pred             ceEEEeccchhHHHHHHHHHHHHHhcCCCccccCCeEEEEcCC
Q psy14377         15 NTILFQGAGEASLGIADLCVMAMQKEGTSEQDARDKIWMVDSK   57 (848)
Q Consensus        15 ~kiV~~GAGaA~ia~a~L~~~am~~~G~~~e~~~~ni~m~Dsk   57 (848)
                      .||+|+|||.||++||..|.+    .|.+..+..-.+.++|+.
T Consensus         3 ~~VaVIGaGpaGL~aA~~L~~----~G~~~~~~~~~V~v~E~~   41 (239)
T d1lqta2           3 YYIAIVGSGPSAFFAAASLLK----AADTTEDLDMAVDMLEML   41 (239)
T ss_dssp             EEEEEECCSHHHHHHHHHHHH----HHHHSTTCCEEEEEEESS
T ss_pred             cEEEEECcCHHHHHHHHHHHH----cCCccccCCCceEEEecC
Confidence            599999999999999998885    453321111368888875

>d1w4xa1 c.3.1.5 (A:10-154,A:390-542) Phenylacetone monooxygenase {Thermobifida fusca [TaxId: 2021]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Phenylacetone monooxygenase
species: Thermobifida fusca [TaxId: 2021]

Probab=88.32  E-value=0.2  Score=50.14  Aligned_cols=36  Identities=17%  Similarity=0.202  Sum_probs=30.1

Q ss_pred             CCCCceEEEeccchhHHHHHHHHHHHHHhcCCCccccCCeEEEEcCC
Q psy14377         11 RLSDNTILFQGAGEASLGIADLCVMAMQKEGTSEQDARDKIWMVDSK   57 (848)
Q Consensus        11 ~i~d~kiV~~GAGaA~ia~a~L~~~am~~~G~~~e~~~~ni~m~Dsk   57 (848)
                      +.+++.|+|+|||.+||++|+.|.    +.|+       ++.++|+.
T Consensus         4 p~~~~dV~IIGAG~sGl~~a~~L~----~~G~-------~v~i~Ek~   39 (298)
T d1w4xa1           4 PPEEVDVLVVGAGFSGLYALYRLR----ELGR-------SVHVIETA   39 (298)
T ss_dssp             CCSEEEEEEECCSHHHHHHHHHHH----HTTC-------CEEEECSS
T ss_pred             CCCCCCEEEECccHHHHHHHHHHH----hCCC-------CEEEEEcC
Confidence            567899999999999999999887    4786       57777764

>d3c96a1 c.3.1.2 (A:4-182,A:294-402) Monooxygenase PhzS {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Monooxygenase PhzS
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=88.01  E-value=0.25  Score=45.94  Aligned_cols=33  Identities=30%  Similarity=0.351  Sum_probs=27.7

Q ss_pred             ceEEEeccchhHHHHHHHHHHHHHhcCCCccccCCeEEEEcCC
Q psy14377         15 NTILFQGAGEASLGIADLCVMAMQKEGTSEQDARDKIWMVDSK   57 (848)
Q Consensus        15 ~kiV~~GAGaA~ia~a~L~~~am~~~G~~~e~~~~ni~m~Dsk   57 (848)
                      +||+|+|||-||+++|.+|.+    .|+.      +|.++++.
T Consensus         2 ~~V~IvGaG~aGl~~A~~L~~----~Gi~------~V~V~Er~   34 (288)
T d3c96a1           2 IDILIAGAGIGGLSCALALHQ----AGIG------KVTLLESS   34 (288)
T ss_dssp             CEEEEECCSHHHHHHHHHHHH----TTCS------EEEEEESS
T ss_pred             CEEEEECcCHHHHHHHHHHHh----CCCC------eEEEEeCC
Confidence            589999999999999998884    7863      67787763

>d2bi7a1 c.4.1.3 (A:2-247,A:317-384) UDP-galactopyranose mutase, N-terminal domain {Klebsiella pneumoniae [TaxId: 573]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: UDP-galactopyranose mutase, N-terminal domain
domain: UDP-galactopyranose mutase, N-terminal domain
species: Klebsiella pneumoniae [TaxId: 573]

Probab=87.89  E-value=0.25  Score=49.56  Aligned_cols=36  Identities=22%  Similarity=0.404  Sum_probs=29.4

Q ss_pred             CCceEEEeccchhHHHHHHHHHHHHHhcCCCccccCCeEEEEcCCCc
Q psy14377         13 SDNTILFQGAGEASLGIADLCVMAMQKEGTSEQDARDKIWMVDSKGL   59 (848)
Q Consensus        13 ~d~kiV~~GAGaA~ia~a~L~~~am~~~G~~~e~~~~ni~m~DskGv   59 (848)
                      +.-||+|+|||-+|++||..|.    +.|       .+|.++++...
T Consensus         1 k~KKI~IIGaG~sGL~aA~~L~----k~G-------~~V~viEk~~~   36 (314)
T d2bi7a1           1 KSKKILIVGAGFSGAVIGRQLA----EKG-------HQVHIIDQRDH   36 (314)
T ss_dssp             CCCEEEEECCSHHHHHHHHHHH----TTT-------CEEEEEESSSS
T ss_pred             CCCEEEEECCcHHHHHHHHHHH----hCC-------CCEEEEECCCC
Confidence            3568999999999999999887    356       47899998643

>d1v9la1 c.2.1.7 (A:180-421) Glutamate dehydrogenase {Pyrobaculum islandicum [TaxId: 2277]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Glutamate dehydrogenase
species: Pyrobaculum islandicum [TaxId: 2277]

Probab=87.54  E-value=0.35  Score=47.65  Aligned_cols=67  Identities=16%  Similarity=0.122  Sum_probs=55.8

Q ss_pred             chHHHHHHHHHHHHHhhhCCcCCCceEEecCcchhhHHHHHHHHHHHhccccccccc-CceecCCCCCCc
Q psy14377        684 QGTASVAVAGLLASLRITKTRLSDNTILFQGAGEGTASVAVAGLLASLRITKTRLSD-NTILFQGAGEGT  752 (848)
Q Consensus       684 QGTaaV~LAgllaAlr~t~~~l~d~riv~~GAG~A~~g~giA~ll~~~~~~~~~~~d-~g~i~~~r~~~~  752 (848)
                      +.||-=+..++-.+++..+.+|++.||+|-|.|.-  |...|++|.+.+.+-+.++| +|.+|...+-.-
T Consensus         8 ~ATg~Gv~~~~~~~~~~~~~~l~g~~v~IqGfGnV--G~~~a~~L~~~Gakvv~vsD~~g~i~~~~Gld~   75 (242)
T d1v9la1           8 YATGFGVAVATREMAKKLWGGIEGKTVAIQGMGNV--GRWTAYWLEKMGAKVIAVSDINGVAYRKEGLNV   75 (242)
T ss_dssp             GHHHHHHHHHHHHHHHHHHSCCTTCEEEEECCSHH--HHHHHHHHHTTTCEEEEEECSSCEEECTTCCCT
T ss_pred             chhhHHHHHHHHHHHHHcCCCCCCCEEEEECCCHH--HHHHHHHHHHcCCeEEEeecccccccccccccH
Confidence            34666666677788888888999999999999999  99999999999987778899 998886554433

>d1c0pa1 c.4.1.2 (A:999-1193,A:1289-1361) D-aminoacid oxidase, N-terminal domain {Rhodotorula gracilis [TaxId: 5286]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: D-aminoacid oxidase, N-terminal domain
domain: D-aminoacid oxidase, N-terminal domain
species: Rhodotorula gracilis [TaxId: 5286]

Probab=86.70  E-value=0.31  Score=44.66  Aligned_cols=36  Identities=17%  Similarity=0.225  Sum_probs=29.5

Q ss_pred             CCceEEEeccchHHHHHHHHHHHHHHhcCCChhhhcCcEEEEcCCCc
Q psy14377        239 SDNTILFQGAGEASLGIADLCVMAMQKEGTSEQDARDKIWMVDSKGL  285 (848)
Q Consensus       239 ~d~riv~~GAGaAg~gia~ll~~~m~~~G~s~~eA~~~i~~vD~kGL  285 (848)
                      +.+||+|+|||.+|+.+|-.|.+.    |.       ++.++|++.+
T Consensus         5 ~~~kVvVIGaGiaGl~~A~~L~~~----G~-------~V~vier~~~   40 (268)
T d1c0pa1           5 SQKRVVVLGSGVIGLSSALILARK----GY-------SVHILARDLP   40 (268)
T ss_dssp             CSCEEEEECCSHHHHHHHHHHHHT----TC-------EEEEEESSCT
T ss_pred             CCCcEEEECccHHHHHHHHHHHHC----CC-------CEEEEeCCCC
Confidence            457999999999999999987653    73       6899998653

>d1djqa3 c.4.1.1 (A:341-489,A:646-729) Trimethylamine dehydrogenase, middle domain {Methylophilus methylotrophus, w3a1 [TaxId: 17]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: N-terminal domain of adrenodoxin reductase-like
domain: Trimethylamine dehydrogenase, middle domain
species: Methylophilus methylotrophus, w3a1 [TaxId: 17]

Probab=86.66  E-value=0.38  Score=45.48  Aligned_cols=37  Identities=19%  Similarity=0.356  Sum_probs=30.1

Q ss_pred             CCCCceEEEeccchhHHHHHHHHHHHHHhcCCCccccCCeEEEEcCCC
Q psy14377         11 RLSDNTILFQGAGEASLGIADLCVMAMQKEGTSEQDARDKIWMVDSKG   58 (848)
Q Consensus        11 ~i~d~kiV~~GAGaA~ia~a~L~~~am~~~G~~~e~~~~ni~m~DskG   58 (848)
                      +-..-||+|+|||.||++||..+.+    .|.       +++++|..-
T Consensus        46 ~~~~k~VvIIGaGpAGl~aA~~l~~----~G~-------~v~l~E~~~   82 (233)
T d1djqa3          46 TKNKDSVLIVGAGPSGSEAARVLME----SGY-------TVHLTDTAE   82 (233)
T ss_dssp             CSSCCEEEEECCSHHHHHHHHHHHH----TTC-------EEEEECSSS
T ss_pred             ccCCceEEEEcccHHHHHHHHHHHH----hcc-------ceeeEeecc
Confidence            3467899999999999999998874    785       678887643

>d1luaa1 c.2.1.7 (A:98-288) Methylene-tetrahydromethanopterin dehydrogenase {Methylobacterium extorquens [TaxId: 408]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Methylene-tetrahydromethanopterin dehydrogenase
species: Methylobacterium extorquens [TaxId: 408]

Probab=85.92  E-value=0.8  Score=42.38  Aligned_cols=48  Identities=13%  Similarity=0.219  Sum_probs=39.9

Q ss_pred             HHHHHHHHHHhCCcCCCceEEEecc-chHHHHHHHHHHHHHHhcCCChhhhcCcEEEEcC
Q psy14377        224 VAGLLASLRITKTRLSDNTILFQGA-GEASLGIADLCVMAMQKEGTSEQDARDKIWMVDS  282 (848)
Q Consensus       224 lAgll~Al~~tg~~l~d~riv~~GA-GaAg~gia~ll~~~m~~~G~s~~eA~~~i~~vD~  282 (848)
                      .+++.+..+..|.+|+++++||.|| |..|.++|+.+...    |       -+++++|+
T Consensus         7 ~~~v~~~~~~~~~~l~gK~vlItGasgGIG~~ia~~la~~----G-------~~V~~~~r   55 (191)
T d1luaa1           7 AAGVALVVKAAGGSVKGKKAVVLAGTGPVGMRSAALLAGE----G-------AEVVLCGR   55 (191)
T ss_dssp             HHHHHHHHHHTTSCCTTCEEEEETTTSHHHHHHHHHHHHT----T-------CEEEEEES
T ss_pred             HHHHHHHHHHcCCCCCCCEEEEECCCHHHHHHHHHHHHhh----c-------cchhhccc
Confidence            6688888899999999999999995 88899998887654    7       25777766

>d1bgva1 c.2.1.7 (A:195-449) Glutamate dehydrogenase {Clostridium symbiosum [TaxId: 1512]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Glutamate dehydrogenase
species: Clostridium symbiosum [TaxId: 1512]

Probab=85.67  E-value=0.66  Score=46.14  Aligned_cols=63  Identities=21%  Similarity=0.222  Sum_probs=54.6

Q ss_pred             chHHHHHHHHHHHHHhhhCCcCCCceEEecCcchhhHHHHHHHHHHHhccccccccc-CceecCCC
Q psy14377        684 QGTASVAVAGLLASLRITKTRLSDNTILFQGAGEGTASVAVAGLLASLRITKTRLSD-NTILFQGA  748 (848)
Q Consensus       684 QGTaaV~LAgllaAlr~t~~~l~d~riv~~GAG~A~~g~giA~ll~~~~~~~~~~~d-~g~i~~~r  748 (848)
                      +.||-=+.-.+-.+++-.+.+|++.|++|-|.|.-  |...|+.|.+.+.+-+.++| +|.||...
T Consensus        13 eATG~Gv~~~~~~~~~~~~~~l~g~~v~IQGfGnV--G~~~a~~L~e~GakvvavsD~~G~i~~~~   76 (255)
T d1bgva1          13 EATGYGSVYYVEAVMKHENDTLVGKTVALAGFGNV--AWGAAKKLAELGAKAVTLSGPDGYIYDPE   76 (255)
T ss_dssp             THHHHHHHHHHHHHHHHTTCCSTTCEEEECCSSHH--HHHHHHHHHHHTCEEEEEEETTEEEECTT
T ss_pred             ccchHHHHHHHHHHHHhCCCCCCCCEEEEECCCHH--HHHHHHHHHHcCCeEEEEecCCceEecCC
Confidence            35666666777788888899999999999999999  99999999999988888999 99988643

>d1nyta1 c.2.1.7 (A:102-271) Shikimate 5-dehydrogenase AroE {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Shikimate 5-dehydrogenase AroE
species: Escherichia coli [TaxId: 562]

Probab=85.56  E-value=0.4  Score=43.87  Aligned_cols=40  Identities=35%  Similarity=0.292  Sum_probs=36.1

Q ss_pred             HHHHHHHhhhCCcCCCceEEecCcchhhHHHHHHHHHHHhcc
Q psy14377        692 AGLLASLRITKTRLSDNTILFQGAGEGTASVAVAGLLASLRI  733 (848)
Q Consensus       692 AgllaAlr~t~~~l~d~riv~~GAG~A~~g~giA~ll~~~~~  733 (848)
                      -|++.+|+-.+..+++++++|+|||-|  +-+|+-.|.+.++
T Consensus         3 ~Gf~~~l~~~~~~~~~k~vlIlGaGGa--arai~~al~~~g~   42 (170)
T d1nyta1           3 VGLLSDLERLSFIRPGLRILLIGAGGA--SRGVLLPLLSLDC   42 (170)
T ss_dssp             HHHHHHHHHHTCCCTTCEEEEECCSHH--HHHHHHHHHHTTC
T ss_pred             hHHHHHHHHcCCCCCCCEEEEECCcHH--HHHHHHHhcccce
Confidence            478999999999999999999999999  9999988888765

>d1bgva1 c.2.1.7 (A:195-449) Glutamate dehydrogenase {Clostridium symbiosum [TaxId: 1512]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Glutamate dehydrogenase
species: Clostridium symbiosum [TaxId: 1512]

Probab=85.30  E-value=0.66  Score=46.13  Aligned_cols=56  Identities=18%  Similarity=0.243  Sum_probs=47.9

Q ss_pred             HHHHHHHHHhCCcCCCceEEEeccchHHHHHHHHHHHHHHhcCCChhhhcCcEEEEcCCCcccCCC
Q psy14377        225 AGLLASLRITKTRLSDNTILFQGAGEASLGIADLCVMAMQKEGTSEQDARDKIWMVDSKGLIVKDR  290 (848)
Q Consensus       225 Agll~Al~~tg~~l~d~riv~~GAGaAg~gia~ll~~~m~~~G~s~~eA~~~i~~vD~kGLi~~~r  290 (848)
                      -.+-.+++-.+.+|++.|++|+|.|..|...|+.|.+.    |      .+-+-+-|++|-|+...
T Consensus        21 ~~~~~~~~~~~~~l~g~~v~IQGfGnVG~~~a~~L~e~----G------akvvavsD~~G~i~~~~   76 (255)
T d1bgva1          21 YYVEAVMKHENDTLVGKTVALAGFGNVAWGAAKKLAEL----G------AKAVTLSGPDGYIYDPE   76 (255)
T ss_dssp             HHHHHHHHHTTCCSTTCEEEECCSSHHHHHHHHHHHHH----T------CEEEEEEETTEEEECTT
T ss_pred             HHHHHHHHhCCCCCCCCEEEEECCCHHHHHHHHHHHHc----C------CeEEEEecCCceEecCC
Confidence            35667788889999999999999999999999998765    8      56677899999999754

>d1jw9b_ c.111.1.1 (B:) Molybdenum cofactor biosynthesis protein MoeB {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Activating enzymes of the ubiquitin-like proteins
superfamily: Activating enzymes of the ubiquitin-like proteins
family: Molybdenum cofactor biosynthesis protein MoeB
domain: Molybdenum cofactor biosynthesis protein MoeB
species: Escherichia coli [TaxId: 562]

Probab=84.77  E-value=0.23  Score=47.84  Aligned_cols=37  Identities=22%  Similarity=0.339  Sum_probs=33.3

Q ss_pred             cCCCceEEEeccchHHHHHHHHHHHHHHhcCCChhhhcCcEEEEcCC
Q psy14377        237 RLSDNTILFQGAGEASLGIADLCVMAMQKEGTSEQDARDKIWMVDSK  283 (848)
Q Consensus       237 ~l~d~riv~~GAGaAg~gia~ll~~~m~~~G~s~~eA~~~i~~vD~k  283 (848)
                      +|++.||+|+|+|.-|..+|..|+..    |      .++|.++|.+
T Consensus        27 kL~~~~VliiG~GglGs~va~~La~~----G------vg~i~lvD~D   63 (247)
T d1jw9b_          27 ALKDSRVLIVGLGGLGCAASQYLASA----G------VGNLTLLDFD   63 (247)
T ss_dssp             HHHHCEEEEECCSHHHHHHHHHHHHH----T------CSEEEEECCC
T ss_pred             HHhCCCEEEECCCHHHHHHHHHHHHc----C------CCeEEEECCc
Confidence            57889999999999999999998877    9      6899999964

>d1nhpa1 c.3.1.5 (A:1-119,A:243-321) NADH peroxidase {Enterococcus faecalis [TaxId: 1351]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: NADH peroxidase
species: Enterococcus faecalis [TaxId: 1351]

Probab=84.63  E-value=0.48  Score=43.35  Aligned_cols=37  Identities=8%  Similarity=0.115  Sum_probs=29.6

Q ss_pred             ceEEEeccchhHHHHHHHHHHHHHhcCCCccccCCeEEEEcCCCcc
Q psy14377         15 NTILFQGAGEASLGIADLCVMAMQKEGTSEQDARDKIWMVDSKGLI   60 (848)
Q Consensus        15 ~kiV~~GAGaA~ia~a~L~~~am~~~G~~~e~~~~ni~m~DskGvi   60 (848)
                      .||||+|||.+|+.+|.-+..    ++-+     .+|.++++...+
T Consensus         1 ~KVvIIGgG~~G~e~A~~l~~----~~~~-----~~V~v~~~~~~~   37 (198)
T d1nhpa1           1 MKVIVLGSSHGGYEAVEELLN----LHPD-----AEIQWYEKGDFI   37 (198)
T ss_dssp             CEEEEECSSHHHHHHHHHHHH----HCTT-----SEEEEEESSSSS
T ss_pred             CEEEEECCcHHHHHHHHHHHh----cCCC-----CeEEEEeCCCcc
Confidence            589999999999999998774    5543     479998876554

>d1i8ta1 c.4.1.3 (A:1-244,A:314-367) UDP-galactopyranose mutase, N-terminal domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: UDP-galactopyranose mutase, N-terminal domain
domain: UDP-galactopyranose mutase, N-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=84.54  E-value=0.37  Score=47.62  Aligned_cols=37  Identities=16%  Similarity=0.234  Sum_probs=29.7

Q ss_pred             eEEEeccchhHHHHHHHHHHHHHhcCCCccccCCeEEEEcCC----CccccC
Q psy14377         16 TILFQGAGEASLGIADLCVMAMQKEGTSEQDARDKIWMVDSK----GLIVKD   63 (848)
Q Consensus        16 kiV~~GAGaA~ia~a~L~~~am~~~G~~~e~~~~ni~m~Dsk----Gvi~~~   63 (848)
                      .|||+|||.||++||+.|.    +.|       .+|.++++.    |..+..
T Consensus         3 dv~IIGaG~sGl~~A~~L~----~~g-------~~V~iiEk~~~iGG~~~t~   43 (298)
T d1i8ta1           3 DYIIVGSGLFGAVCANELK----KLN-------KKVLVIEKRNHIGGNAYTE   43 (298)
T ss_dssp             EEEEECCSHHHHHHHHHHG----GGT-------CCEEEECSSSSSSGGGCEE
T ss_pred             cEEEECCcHHHHHHHHHHH----hCC-------CcEEEEECCCCcccceEEe
Confidence            5899999999999999886    357       478999985    555553

>d1gtea4 c.4.1.1 (A:184-287,A:441-532) Dihydropyrimidine dehydrogenase, domain 2 {Pig (Sus scrofa) [TaxId: 9823]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: N-terminal domain of adrenodoxin reductase-like
domain: Dihydropyrimidine dehydrogenase, domain 2
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=84.16  E-value=0.44  Score=42.65  Aligned_cols=33  Identities=27%  Similarity=0.390  Sum_probs=27.3

Q ss_pred             ceEEEeccchHHHHHHHHHHHHHHhcCCChhhhcCcEEEEcCC
Q psy14377        241 NTILFQGAGEASLGIADLCVMAMQKEGTSEQDARDKIWMVDSK  283 (848)
Q Consensus       241 ~riv~~GAGaAg~gia~ll~~~m~~~G~s~~eA~~~i~~vD~k  283 (848)
                      .||+|+|||.||+..|..|.+.    |.      +.+.++|+.
T Consensus         5 ~kVaIIGaGpaGl~aA~~l~~~----G~------~~V~v~E~~   37 (196)
T d1gtea4           5 AKIALLGAGPASISCASFLARL----GY------SDITIFEKQ   37 (196)
T ss_dssp             CCEEEECCSHHHHHHHHHHHHT----TC------CCEEEEESS
T ss_pred             CEEEEECChHHHHHHHHHHHHC----CC------CeEEEEEec
Confidence            6899999999999999987764    84      457788875

>d1bg6a2 c.2.1.6 (A:4-187) N-(1-D-carboxylethyl)-L-norvaline dehydrogenase {Arthrobacter, strain 1c [TaxId: 1663]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: N-(1-D-carboxylethyl)-L-norvaline dehydrogenase
species: Arthrobacter, strain 1c [TaxId: 1663]

Probab=83.88  E-value=0.69  Score=41.30  Aligned_cols=32  Identities=19%  Similarity=0.285  Sum_probs=27.1

Q ss_pred             ceEEEeccchhHHHHHHHHHHHHHhcCCCccccCCeEEEEcCC
Q psy14377         15 NTILFQGAGEASLGIADLCVMAMQKEGTSEQDARDKIWMVDSK   57 (848)
Q Consensus        15 ~kiV~~GAGaA~ia~a~L~~~am~~~G~~~e~~~~ni~m~Dsk   57 (848)
                      -||.|+|||+.|.++|..|..    .|.       +++++|+.
T Consensus         2 k~iaIiGaG~~G~~~A~~l~~----~G~-------~V~~~~r~   33 (184)
T d1bg6a2           2 KTYAVLGLGNGGHAFAAYLAL----KGQ-------SVLAWDID   33 (184)
T ss_dssp             CEEEEECCSHHHHHHHHHHHH----TTC-------EEEEECSC
T ss_pred             CEEEEECccHHHHHHHHHHHH----CCC-------EEEEEECC
Confidence            389999999999999999984    674       68888873

>d2v5za1 c.3.1.2 (A:6-289,A:402-500) Monoamine oxidase B {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Monoamine oxidase B
species: Human (Homo sapiens) [TaxId: 9606]

Probab=83.87  E-value=0.48  Score=44.73  Aligned_cols=31  Identities=16%  Similarity=0.385  Sum_probs=26.4

Q ss_pred             EEEeccchhHHHHHHHHHHHHHhcCCCccccCCeEEEEcCCC
Q psy14377         17 ILFQGAGEASLGIADLCVMAMQKEGTSEQDARDKIWMVDSKG   58 (848)
Q Consensus        17 iV~~GAGaA~ia~a~L~~~am~~~G~~~e~~~~ni~m~DskG   58 (848)
                      |+|+|||-||++||..|.+    .|.       ++.+++++.
T Consensus         2 ViVIGaG~aGL~aA~~L~~----~G~-------~V~VlE~~~   32 (383)
T d2v5za1           2 VVVVGGGISGMAAAKLLHD----SGL-------NVVVLEARD   32 (383)
T ss_dssp             EEEECCBHHHHHHHHHHHH----TTC-------CEEEEESSS
T ss_pred             EEEECCCHHHHHHHHHHHh----CCC-------CEEEEecCC
Confidence            7899999999999998874    674       689999754

>d1fcda1 c.3.1.5 (A:1-114,A:256-327) Flavocytochrome c sulfide dehydrogenase, FCSD, flavin-binding subunit {Purple phototrophic bacterium (Chromatium vinosum) [TaxId: 1049]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Flavocytochrome c sulfide dehydrogenase, FCSD, flavin-binding subunit
species: Purple phototrophic bacterium (Chromatium vinosum) [TaxId: 1049]

Probab=83.43  E-value=0.69  Score=40.04  Aligned_cols=35  Identities=11%  Similarity=0.264  Sum_probs=27.3

Q ss_pred             CceEEEeccchHHHHHHHHHHHHHHhcCCChhhhcCcEEEEcCC
Q psy14377        240 DNTILFQGAGEASLGIADLCVMAMQKEGTSEQDARDKIWMVDSK  283 (848)
Q Consensus       240 d~riv~~GAGaAg~gia~ll~~~m~~~G~s~~eA~~~i~~vD~k  283 (848)
                      ..||||+|||.+|+-+|..|.+.    |-     ..+|.++|+.
T Consensus         2 gkrivIvGgG~~G~e~A~~l~~~----~~-----~~~Vtlie~~   36 (186)
T d1fcda1           2 GRKVVVVGGGTGGATAAKYIKLA----DP-----SIEVTLIEPN   36 (186)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHH----CT-----TSEEEEECSC
T ss_pred             CCcEEEECccHHHHHHHHHHHHc----CC-----CCcEEEEECC
Confidence            46999999999999999887654    52     3478888764

>d1seza1 c.3.1.2 (A:13-329,A:442-497) Protoporphyrinogen oxidase {Tobacco (Nicotiana tabacum) [TaxId: 4097]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Protoporphyrinogen oxidase
species: Tobacco (Nicotiana tabacum) [TaxId: 4097]

Probab=83.30  E-value=0.42  Score=43.20  Aligned_cols=32  Identities=19%  Similarity=0.306  Sum_probs=26.4

Q ss_pred             ceEEEeccchHHHHHHHHHHHHHHhcCCChhhhcCcEEEEcCC
Q psy14377        241 NTILFQGAGEASLGIADLCVMAMQKEGTSEQDARDKIWMVDSK  283 (848)
Q Consensus       241 ~riv~~GAGaAg~gia~ll~~~m~~~G~s~~eA~~~i~~vD~k  283 (848)
                      .||+|+|||.||+..|..|.+    .|.       ++.++|+.
T Consensus         2 KkV~IIGaG~aGL~aA~~La~----~G~-------~V~vlE~~   33 (373)
T d1seza1           2 KRVAVIGAGVSGLAAAYKLKI----HGL-------NVTVFEAE   33 (373)
T ss_dssp             CEEEEECCSHHHHHHHHHHHT----TSC-------EEEEECSS
T ss_pred             CEEEEECcCHHHHHHHHHHHh----CCC-------CEEEEeCC
Confidence            589999999999999998764    373       68888874

>d1v9la1 c.2.1.7 (A:180-421) Glutamate dehydrogenase {Pyrobaculum islandicum [TaxId: 2277]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Glutamate dehydrogenase
species: Pyrobaculum islandicum [TaxId: 2277]

Probab=83.03  E-value=0.82  Score=44.89  Aligned_cols=57  Identities=16%  Similarity=0.122  Sum_probs=47.4

Q ss_pred             HHHHHHHHHHhCCcCCCceEEEeccchHHHHHHHHHHHHHHhcCCChhhhcCcEEEEcCCCcccCCC
Q psy14377        224 VAGLLASLRITKTRLSDNTILFQGAGEASLGIADLCVMAMQKEGTSEQDARDKIWMVDSKGLIVKDR  290 (848)
Q Consensus       224 lAgll~Al~~tg~~l~d~riv~~GAGaAg~gia~ll~~~m~~~G~s~~eA~~~i~~vD~kGLi~~~r  290 (848)
                      .-++-.+++..+.+|++.|++|+|.|..|...|++|.+.    |      .+=+-+-|++|-++...
T Consensus        15 ~~~~~~~~~~~~~~l~g~~v~IqGfGnVG~~~a~~L~~~----G------akvv~vsD~~g~i~~~~   71 (242)
T d1v9la1          15 AVATREMAKKLWGGIEGKTVAIQGMGNVGRWTAYWLEKM----G------AKVIAVSDINGVAYRKE   71 (242)
T ss_dssp             HHHHHHHHHHHHSCCTTCEEEEECCSHHHHHHHHHHHTT----T------CEEEEEECSSCEEECTT
T ss_pred             HHHHHHHHHHcCCCCCCCEEEEECCCHHHHHHHHHHHHc----C------CeEEEeecccccccccc
Confidence            446777888888899999999999999999999987754    7      44566899999988754

>d1npya1 c.2.1.7 (A:103-269) Shikimate 5-dehydrogenase-like protein HI0607 {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Shikimate 5-dehydrogenase-like protein HI0607
species: Haemophilus influenzae [TaxId: 727]

Probab=82.55  E-value=0.61  Score=42.68  Aligned_cols=45  Identities=11%  Similarity=0.230  Sum_probs=38.1

Q ss_pred             HHHHHHhhhCCcCCCceEEecCcchhhHHHHHHHHHHHhccccccccc
Q psy14377        693 GLLASLRITKTRLSDNTILFQGAGEGTASVAVAGLLASLRITKTRLSD  740 (848)
Q Consensus       693 gllaAlr~t~~~l~d~riv~~GAG~A~~g~giA~ll~~~~~~~~~~~d  740 (848)
                      |+..+++-.+.+ ++.+|+|+|||.|  +-+|+..|.+.+++++.+.+
T Consensus         4 G~~~~l~~~~~~-~~~~vlIlGaGGa--arai~~aL~~~g~~~I~I~n   48 (167)
T d1npya1           4 AIVKLIEKYHLN-KNAKVIVHGSGGM--AKAVVAAFKNSGFEKLKIYA   48 (167)
T ss_dssp             HHHHHHHHTTCC-TTSCEEEECSSTT--HHHHHHHHHHTTCCCEEEEC
T ss_pred             HHHHHHHHcCCC-CCCeEEEECCCHH--HHHHHHHHHHCCCCEEEEec
Confidence            678888888877 8899999999999  99999999988877766443

>d2naca1 c.2.1.4 (A:148-335) Formate dehydrogenase {Pseudomonas sp., strain 101 [TaxId: 306]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: Formate dehydrogenase
species: Pseudomonas sp., strain 101 [TaxId: 306]

Probab=82.38  E-value=1.3  Score=41.18  Aligned_cols=68  Identities=15%  Similarity=0.066  Sum_probs=46.9

Q ss_pred             CCCCCCceEEEeccchhHHHHHHHHHHHHHhcCCCccccCCeEEEEcCCCccccCCCCCCCChhhhhhcccCCCCCCHHH
Q psy14377          9 KTRLSDNTILFQGAGEASLGIADLCVMAMQKEGTSEQDARDKIWMVDSKGLIVKDRPEGGVTGHKVHYAKKHAPVKNLAD   88 (848)
Q Consensus         9 gK~i~d~kiV~~GAGaA~ia~a~L~~~am~~~G~~~e~~~~ni~m~DskGvi~~~R~d~~l~~~k~~~a~~~~~~~tL~e   88 (848)
                      ++.++.-++.++|.|..|.++|+++.    .+|.       +++.+|+...     ++   +..+.....   ...+|+|
T Consensus        39 ~~~l~~~~vgiiG~G~IG~~va~~l~----~fg~-------~v~~~d~~~~-----~~---~~~~~~~~~---~~~~l~~   96 (188)
T d2naca1          39 AYDLEAMHVGTVAAGRIGLAVLRRLA----PFDV-------HLHYTDRHRL-----PE---SVEKELNLT---WHATRED   96 (188)
T ss_dssp             CCCCTTCEEEEECCSHHHHHHHHHHG----GGTC-------EEEEECSSCC-----CH---HHHHHHTCE---ECSSHHH
T ss_pred             ceeccccceeeccccccchhhhhhhh----ccCc-------eEEEEeeccc-----cc---ccccccccc---ccCCHHH
Confidence            56789999999999999999999987    4774       7888887421     11   122221112   2368999


Q ss_pred             HhcccCCCchhh
Q psy14377         89 VVKTVKPSILIE  100 (848)
Q Consensus        89 a~~~s~~~v~~g  100 (848)
                      .++.  +|+++-
T Consensus        97 ~l~~--sD~v~~  106 (188)
T d2naca1          97 MYPV--CDVVTL  106 (188)
T ss_dssp             HGGG--CSEEEE
T ss_pred             HHHh--ccchhh
Confidence            9986  566653

>d2iida1 c.3.1.2 (A:4-319,A:433-486) L-aminoacid oxidase {Malayan pit viper (Calloselasma rhodostoma) [TaxId: 8717]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: L-aminoacid oxidase
species: Malayan pit viper (Calloselasma rhodostoma) [TaxId: 8717]

Probab=81.79  E-value=0.71  Score=43.00  Aligned_cols=32  Identities=25%  Similarity=0.402  Sum_probs=27.0

Q ss_pred             ceEEEeccchHHHHHHHHHHHHHHhcCCChhhhcCcEEEEcCC
Q psy14377        241 NTILFQGAGEASLGIADLCVMAMQKEGTSEQDARDKIWMVDSK  283 (848)
Q Consensus       241 ~riv~~GAGaAg~gia~ll~~~m~~~G~s~~eA~~~i~~vD~k  283 (848)
                      +||+|+|||.||+..|-.|.+.    |.       ++.++|+.
T Consensus        31 kkV~IIGaG~aGLsaA~~L~~~----G~-------~V~vlE~~   62 (370)
T d2iida1          31 KHVVIVGAGMAGLSAAYVLAGA----GH-------QVTVLEAS   62 (370)
T ss_dssp             CEEEEECCBHHHHHHHHHHHHH----TC-------EEEEECSS
T ss_pred             CeEEEECCCHHHHHHHHHHHHC----CC-------CEEEEeCC
Confidence            6899999999999999987654    73       68888875

>d1c1da1 c.2.1.7 (A:149-349) Phenylalanine dehydrogenase {Rhodococcus sp., M4 [TaxId: 1831]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Phenylalanine dehydrogenase
species: Rhodococcus sp., M4 [TaxId: 1831]

Probab=81.72  E-value=1.4  Score=42.07  Aligned_cols=53  Identities=23%  Similarity=0.308  Sum_probs=41.1

Q ss_pred             hhhHHHHHHHHHHHHHhCC-cCCCceEEEeccchHHHHHHHHHHHHHHhcCCChhhhcCcEEEEcC
Q psy14377        218 ESCVNDVAGLLASLRITKT-RLSDNTILFQGAGEASLGIADLCVMAMQKEGTSEQDARDKIWMVDS  282 (848)
Q Consensus       218 TA~V~~lAgll~Al~~tg~-~l~d~riv~~GAGaAg~gia~ll~~~m~~~G~s~~eA~~~i~~vD~  282 (848)
                      |+.=+ ..++-.+++-.|. +|++.||+|+|.|..|..+|+.|.+.    |.       +++.+|.
T Consensus         5 Ta~Gv-~~~~~~~~~~~g~~~L~gk~v~IqG~G~VG~~~A~~L~~~----Ga-------kvvv~d~   58 (201)
T d1c1da1           5 TAVGV-FEAMKATVAHRGLGSLDGLTVLVQGLGAVGGSLASLAAEA----GA-------QLLVADT   58 (201)
T ss_dssp             HHHHH-HHHHHHHHHHTTCCCSTTCEEEEECCSHHHHHHHHHHHHT----TC-------EEEEECS
T ss_pred             hHHHH-HHHHHHHHHHhCCCCCCCCEEEEECCCHHHHHHHHHHHHC----CC-------EEEEecc
Confidence            34333 5577778888886 79999999999999999999987764    73       5666664

>d1dxla1 c.3.1.5 (A:4-152,A:276-347) Dihydrolipoamide dehydrogenase {Garden pea (Pisum sativum) [TaxId: 3888]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Garden pea (Pisum sativum) [TaxId: 3888]

Probab=81.59  E-value=0.65  Score=42.44  Aligned_cols=36  Identities=19%  Similarity=0.311  Sum_probs=28.4

Q ss_pred             CCceEEEeccchhHHHHHHHHHHHHHhcCCCccccCCeEEEEcCCCc
Q psy14377         13 SDNTILFQGAGEASLGIADLCVMAMQKEGTSEQDARDKIWMVDSKGL   59 (848)
Q Consensus        13 ~d~kiV~~GAGaA~ia~a~L~~~am~~~G~~~e~~~~ni~m~DskGv   59 (848)
                      ++-=+||+|||.||++||..+.    +.|.       ++.++|+++.
T Consensus         2 ~~yDvvVIGgGpaGl~aA~~aa----~~G~-------kV~vie~~~~   37 (221)
T d1dxla1           2 DENDVVIIGGGPGGYVAAIKAA----QLGF-------KTTCIEKRGA   37 (221)
T ss_dssp             CCCCEEEECCSHHHHHHHHHHH----HHTC-------CEEEEECSSS
T ss_pred             CcCCEEEECCCHHHHHHHHHHH----HCCC-------cEEEEEecCC
Confidence            3456899999999999998776    4774       6888887654

>d1feca2 c.3.1.5 (A:170-286) Trypanothione reductase {Crithidia fasciculata [TaxId: 5656]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Trypanothione reductase
species: Crithidia fasciculata [TaxId: 5656]

Probab=80.84  E-value=0.69  Score=39.47  Aligned_cols=39  Identities=18%  Similarity=0.287  Sum_probs=29.0

Q ss_pred             ceEEEeccchhHHHHHHHHHHHHHhcCCCccccCCeEEEEcCCCccc
Q psy14377         15 NTILFQGAGEASLGIADLCVMAMQKEGTSEQDARDKIWMVDSKGLIV   61 (848)
Q Consensus        15 ~kiV~~GAGaA~ia~a~L~~~am~~~G~~~e~~~~ni~m~DskGvi~   61 (848)
                      -|++|+|+|.+|+-+|.++.. +.+.|       .+|.++++..-+-
T Consensus        19 ~~v~IiGgG~ig~E~A~~l~~-~~~~g-------~~Vtli~~~~~il   57 (117)
T d1feca2          19 KRALCVGGGYISIEFAGIFNA-YKARG-------GQVDLAYRGDMIL   57 (117)
T ss_dssp             SEEEEECSSHHHHHHHHHHHH-HSCTT-------CEEEEEESSSSSS
T ss_pred             CeEEEECCChHHHHHHHHhHh-hcccc-------cccceeccccccc
Confidence            489999999999999987753 33445       3788887755444

>d1hwxa1 c.2.1.7 (A:209-501) Glutamate dehydrogenase {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Glutamate dehydrogenase
species: Cow (Bos taurus) [TaxId: 9913]

Probab=80.73  E-value=2.2  Score=43.25  Aligned_cols=82  Identities=15%  Similarity=0.205  Sum_probs=55.6

Q ss_pred             CcCCCceEEecCcchhhHHHHHHHHHHHhccccccccc-CceecCCCCCCchHHHhhhccccchh----------hcccc
Q psy14377        703 TRLSDNTILFQGAGEGTASVAVAGLLASLRITKTRLSD-NTILFQGAGEGTASVAIAGLLASLRI----------TKTRL  771 (848)
Q Consensus       703 ~~l~d~riv~~GAG~A~~g~giA~ll~~~~~~~~~~~d-~g~i~~~r~~~~~~~~~~~~~~~~r~----------~~~~~  771 (848)
                      .+|++.||+|-|.|.-  |...|+.|.+.+.+-+.++| +|.||..  .|.+.-+-.-.+..+.+          ..+.+
T Consensus        32 ~~L~gktvaIqGfGnV--G~~~A~~L~e~Gakvv~vsD~~G~i~~~--~Gld~~~L~~~~~~~~~~~~~~~~~~~~~~~~  107 (293)
T d1hwxa1          32 PGFGDKTFAVQGFGNV--GLHSMRYLHRFGAKCVAVGESDGSIWNP--DGIDPKELEDFKLQHGTILGFPKAKIYEGSIL  107 (293)
T ss_dssp             SSSTTCEEEEECCSHH--HHHHHHHHHHTTCEEEEEEETTEEECCT--TCCCHHHHHHHHHTTSSSTTCTTSCBCCSCGG
T ss_pred             CCCCCCEEEEECCCHH--HHHHHHHHHHCCCEEEEEEccchhhccc--cccchHHHHHHHHHcCCeecccccccCCcccc
Confidence            5799999999999999  99999999999988888999 9988764  44443111111111111          11222


Q ss_pred             -CCCceEEeecCCCcchh
Q psy14377        772 -SDNTILFQGSGEGTASV  788 (848)
Q Consensus       772 -~~~~~~~~~s~~~~~~~  788 (848)
                       .++|||+=-.-++.-.-
T Consensus       108 ~~~~DIliPaA~~~~I~~  125 (293)
T d1hwxa1         108 EVDCDILIPAASEKQLTK  125 (293)
T ss_dssp             GCCCSEEEECSSSSCBCT
T ss_pred             cCCccEEeeccccccccH
Confidence             38999997666655443

>d1ps9a3 c.4.1.1 (A:331-465,A:628-671) 2,4-dienoyl-CoA reductase, middle domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: N-terminal domain of adrenodoxin reductase-like
domain: 2,4-dienoyl-CoA reductase, middle domain
species: Escherichia coli [TaxId: 562]

Probab=80.67  E-value=1  Score=42.17  Aligned_cols=38  Identities=24%  Similarity=0.369  Sum_probs=30.8

Q ss_pred             CCCceEEEeccchhHHHHHHHHHHHHHhcCCCccccCCeEEEEcCCCcc
Q psy14377         12 LSDNTILFQGAGEASLGIADLCVMAMQKEGTSEQDARDKIWMVDSKGLI   60 (848)
Q Consensus        12 i~d~kiV~~GAGaA~ia~a~L~~~am~~~G~~~e~~~~ni~m~DskGvi   60 (848)
                      -..-||+|+|||.||+++|..+.    +.|.       ++.++|+...+
T Consensus        41 ~~~k~V~IIGaGPAGL~AA~~la----~~G~-------~Vtl~E~~~~~   78 (179)
T d1ps9a3          41 VQKKNLAVVGAGPAGLAFAINAA----ARGH-------QVTLFDAHSEI   78 (179)
T ss_dssp             SSCCEEEEECCSHHHHHHHHHHH----TTTC-------EEEEEESSSSS
T ss_pred             CCCcEEEEECccHHHHHHHHHHH----hhcc-------ceEEEeccCcc
Confidence            34568999999999999999887    4674       78999886554

>d1kifa1 c.4.1.2 (A:1-194,A:288-339) D-aminoacid oxidase, N-terminal domain {Pig (Sus scrofa) [TaxId: 9823]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: D-aminoacid oxidase, N-terminal domain
domain: D-aminoacid oxidase, N-terminal domain
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=80.47  E-value=0.66  Score=42.34  Aligned_cols=37  Identities=14%  Similarity=0.064  Sum_probs=27.2

Q ss_pred             eEEecCcchhhHHHHHHHHHHHhcccccccccCceecCC
Q psy14377        709 TILFQGAGEGTASVAVAGLLASLRITKTRLSDNTILFQG  747 (848)
Q Consensus       709 riv~~GAG~A~~g~giA~ll~~~~~~~~~~~d~g~i~~~  747 (848)
                      ||+|+|||.+  |+.+|-.|.+.+.+-..+++..++.++
T Consensus         2 kV~VIGaGi~--GlstA~~L~~~G~~v~v~e~~~i~~~~   38 (246)
T d1kifa1           2 RVVVIGAGVI--GLSTALCIHERYHSVLQPLDVKVYADR   38 (246)
T ss_dssp             EEEEECCSHH--HHHHHHHHHHHHTTTSSSCEEEEEESC
T ss_pred             EEEEECchHH--HHHHHHHHHHCCCCceEEeeeeecccC
Confidence            7999999999  999999999988653333333343333

>d1pjca1 c.2.1.4 (A:136-303) L-alanine dehydrogenase {Phormidium lapideum [TaxId: 32060]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: L-alanine dehydrogenase
species: Phormidium lapideum [TaxId: 32060]

Probab=80.36  E-value=1.1  Score=42.26  Aligned_cols=37  Identities=16%  Similarity=0.282  Sum_probs=26.7

Q ss_pred             eeEEccccccccCCCCCCCHHHHHHHHhcCCCceEEecCC
Q psy14377        423 TLDVGTNWRRAAAIPQVFTADILKDMAAFNKRPIIFALSN  462 (848)
Q Consensus       423 ~v~iG~~~~~~S~~~g~FTeevvk~Ma~~~~rPIIFaLSN  462 (848)
                      |++||+--..-...|-++|+|+|+.|-   +--+|.=+|-
T Consensus        97 DivI~aalipG~~aP~lIt~~mv~~Mk---~GSVIVDvai  133 (168)
T d1pjca1          97 DLLIGAVLVPGRRAPILVPASLVEQMR---TGSVIVDVAV  133 (168)
T ss_dssp             SEEEECCCCTTSSCCCCBCHHHHTTSC---TTCEEEETTC
T ss_pred             cEEEEeeecCCcccCeeecHHHHhhcC---CCcEEEEeec
Confidence            888887432234457789999999998   5667766654

>d1pj5a2 c.3.1.2 (A:4-219,A:339-427) N,N-dimethylglycine oxidase {Arthrobacter globiformis [TaxId: 1665]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: N,N-dimethylglycine oxidase
species: Arthrobacter globiformis [TaxId: 1665]

Probab=80.06  E-value=0.75  Score=44.14  Aligned_cols=32  Identities=31%  Similarity=0.423  Sum_probs=26.8

Q ss_pred             eEEEeccchhHHHHHHHHHHHHHhcCCCccccCCeEEEEcCC
Q psy14377         16 TILFQGAGEASLGIADLCVMAMQKEGTSEQDARDKIWMVDSK   57 (848)
Q Consensus        16 kiV~~GAGaA~ia~a~L~~~am~~~G~~~e~~~~ni~m~Dsk   57 (848)
                      +|||+|||.+|++||.-|.    +.|.      ++|.++|+.
T Consensus         3 dViIIGaGi~G~s~A~~La----~~G~------~~V~liE~~   34 (305)
T d1pj5a2           3 RIVIIGAGIVGTNLADELV----TRGW------NNITVLDQG   34 (305)
T ss_dssp             CEEEECCSHHHHHHHHHHH----HTTC------CCEEEECSS
T ss_pred             CEEEECcCHHHHHHHHHHH----HcCC------CcEEEEeCC
Confidence            6999999999999998776    3675      369999885

>d1jw9b_ c.111.1.1 (B:) Molybdenum cofactor biosynthesis protein MoeB {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Activating enzymes of the ubiquitin-like proteins
superfamily: Activating enzymes of the ubiquitin-like proteins
family: Molybdenum cofactor biosynthesis protein MoeB
domain: Molybdenum cofactor biosynthesis protein MoeB
species: Escherichia coli [TaxId: 562]

Probab=80.06  E-value=0.42  Score=45.94  Aligned_cols=40  Identities=18%  Similarity=0.316  Sum_probs=34.5

Q ss_pred             CCCCCceEEEeccchhHHHHHHHHHHHHHhcCCCccccCCeEEEEcCCCc
Q psy14377         10 TRLSDNTILFQGAGEASLGIADLCVMAMQKEGTSEQDARDKIWMVDSKGL   59 (848)
Q Consensus        10 K~i~d~kiV~~GAGaA~ia~a~L~~~am~~~G~~~e~~~~ni~m~DskGv   59 (848)
                      +||++.||+++|+|.-|-.+|+.|..    .|+      ++|.++|.+=+
T Consensus        26 ~kL~~~~VliiG~GglGs~va~~La~----~Gv------g~i~lvD~D~V   65 (247)
T d1jw9b_          26 EALKDSRVLIVGLGGLGCAASQYLAS----AGV------GNLTLLDFDTV   65 (247)
T ss_dssp             HHHHHCEEEEECCSHHHHHHHHHHHH----HTC------SEEEEECCCBC
T ss_pred             HHHhCCCEEEECCCHHHHHHHHHHHH----cCC------CeEEEECCccc
Confidence            47999999999999999999998884    887      59999997533