Psyllid ID: psy14407
Local Sequence Feature Prediction
| Prediction and (Method) | Result |
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Close Homologs for Annotation Transfer
Close Homologs in SWISS-PROT Database Detected by BLAST 
Original result of BLAST against SWISS-PROT Database
| ID | Alignment graph | Length |
Definition |
RBH(Q2H) |
RBH(H2Q) |
Q cover |
H cover |
Identity |
E-value |
| Query | 522 | 2.2.26 [Sep-21-2011] | |||||||
| P18172 | 625 | Glucose dehydrogenase [ac | no | N/A | 0.932 | 0.779 | 0.336 | 4e-61 | |
| P18173 | 625 | Glucose dehydrogenase [ac | no | N/A | 0.927 | 0.774 | 0.330 | 8e-60 | |
| P64264 | 528 | Uncharacterized GMC-type | yes | N/A | 0.890 | 0.880 | 0.338 | 1e-49 | |
| P64263 | 528 | Uncharacterized GMC-type | yes | N/A | 0.890 | 0.880 | 0.338 | 1e-49 | |
| A6U6Y8 | 549 | Choline dehydrogenase OS= | yes | N/A | 0.886 | 0.843 | 0.301 | 4e-49 | |
| P54223 | 549 | Choline dehydrogenase OS= | yes | N/A | 0.886 | 0.843 | 0.298 | 2e-47 | |
| C3MIE4 | 549 | Choline dehydrogenase OS= | no | N/A | 0.873 | 0.830 | 0.297 | 4e-47 | |
| B9JBA2 | 549 | Choline dehydrogenase OS= | yes | N/A | 0.879 | 0.836 | 0.299 | 2e-46 | |
| Q47944 | 531 | L-sorbose 1-dehydrogenase | yes | N/A | 0.848 | 0.834 | 0.302 | 6e-46 | |
| Q8UH55 | 549 | Choline dehydrogenase OS= | yes | N/A | 0.892 | 0.848 | 0.297 | 2e-45 |
| >sp|P18172|DHGL_DROPS Glucose dehydrogenase [acceptor] OS=Drosophila pseudoobscura pseudoobscura GN=Gld PE=3 SV=4 | Back alignment and function desciption |
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Score = 236 bits (601), Expect = 4e-61, Method: Compositional matrix adjust.
Identities = 174/517 (33%), Positives = 264/517 (51%), Gaps = 30/517 (5%)
Query: 8 SEFDHAYLAEPSQFAGLGVRNARIKITAGKGLGGSSAVQNILYQRGTSYDYENFAKLGYN 67
S+ D+ Y EP + A L R GK LGG+S + ++Y RG DY+++A G
Sbjct: 116 SDIDYRYNTEPERMACLSSMEQRCYWPRGKVLGGTSVMNGMMYIRGNREDYDDWAAQGNP 175
Query: 68 GWGYDETLKYFVKSEDYRSVIYNESKAVHGTQGYLPVGLFKNKENNIIREIFETSAQELG 127
GW Y + L +F KSED + ++ H G LPVG F N + + +E+G
Sbjct: 176 GWSYQDVLPFFKKSEDNLELDAVGTE-YHAKGGLLPVGKF--PYNPPLSYALLKAGEEMG 232
Query: 128 YPCPKDMNDRYVDVGFAELPGMTRYGLRFSAADAYLTPIAGKRTNLYVLKRSKVTKVIIN 187
+ +D+N + GF R G+R+S+A A+L P A R NL++L + VTKV+I+
Sbjct: 233 FSV-QDLNGQN-STGFMIAQMTARNGIRYSSARAFLRP-ARMRNNLHILLNTTVTKVLIH 289
Query: 188 --DQNVATGVEYVNSKGETVRVTANKEVILTAGAIANAQLLLLSGIGPKAHLDEVKI-PV 244
+NV GVE + G ++ KEVI++ GA+ + Q+LLLSG+GPK L +V + PV
Sbjct: 290 PGTKNV-VGVEVSDQFGSMRKILVKKEVIVSGGAVNSPQILLLSGVGPKEDLQKVNVRPV 348
Query: 245 KQDLRVGENLKLN-AQFTGPVM--AFSAPLKRTVYSQEMVFKYLVNRIGPLSNAGLWSFT 301
VG+NL + A FT + A +APL +YL+ R G +S G+ T
Sbjct: 349 HHLPGVGKNLHNHVAYFTNFFIDDADTAPLNWAT-----AMEYLLFRDGLMSGTGISDVT 403
Query: 302 GYIDTLQNTARPDLEIHLLYFQQNDIRNMCKIKRAYDFNDEVQTAYVNLNKRTDMGVISM 361
+ T + RP+L LYF + R + + N R I
Sbjct: 404 AKMAT-RWADRPNLPDLQLYFGG----YLASCARTGQVGELLSN-----NSRAIQ--IFP 451
Query: 362 SLVNPKSCGKVTLKSADPLAPPCIDTGILSEPEDLATLIRGTDYITRLEQTEAIRLAGGT 421
+++NPKS G +TL+SADPL PP I L++ D+ TL+ G + RL QT ++ G
Sbjct: 452 AVLNPKSRGYITLRSADPLDPPRIFANYLTDERDVKTLVEGIKFAIRLSQTSPLKQYGMR 511
Query: 422 LMSLNLEACSQYPWRSTHSWTCYIRHLTTTTSNPVGTVMMGNADDPNAVVTPDLKVKGIK 481
L ++ C + + S W C +R T ++ G+ MG + DP AVV +L+V G++
Sbjct: 512 LDKTVVKGCESHAFASDAYWECAVRQNTGPENHQAGSCKMGPSHDPMAVVNHELRVHGVR 571
Query: 482 GLRVADISVLPNAIITQSDAISYMIGEKCADLVKTSY 518
GLRV D S++P + A + MI EK A L+K ++
Sbjct: 572 GLRVMDTSIMPKVTAGNTHAPAVMIAEKGAYLLKRAW 608
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Drosophila pseudoobscura pseudoobscura (taxid: 46245) EC: 1EC: .EC: 1EC: .EC: 9EC: 9EC: .EC: 1EC: 0 |
| >sp|P18173|DHGL_DROME Glucose dehydrogenase [acceptor] OS=Drosophila melanogaster GN=Gld PE=3 SV=3 | Back alignment and function description |
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| >sp|P64264|Y1310_MYCBO Uncharacterized GMC-type oxidoreductase Mb1310 OS=Mycobacterium bovis (strain ATCC BAA-935 / AF2122/97) GN=Mb1310 PE=3 SV=1 | Back alignment and function description |
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| >sp|P64263|Y1279_MYCTU Uncharacterized GMC-type oxidoreductase Rv1279/MT1316 OS=Mycobacterium tuberculosis GN=Rv1279 PE=3 SV=1 | Back alignment and function description |
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| >sp|A6U6Y8|BETA_SINMW Choline dehydrogenase OS=Sinorhizobium medicae (strain WSM419) GN=betA PE=3 SV=1 | Back alignment and function description |
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| >sp|P54223|BETA_RHIME Choline dehydrogenase OS=Rhizobium meliloti (strain 1021) GN=betA PE=3 SV=2 | Back alignment and function description |
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| >sp|C3MIE4|BETA_RHISN Choline dehydrogenase OS=Rhizobium sp. (strain NGR234) GN=betA PE=3 SV=1 | Back alignment and function description |
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| >sp|B9JBA2|BETA_AGRRK Choline dehydrogenase OS=Agrobacterium radiobacter (strain K84 / ATCC BAA-868) GN=betA PE=3 SV=1 | Back alignment and function description |
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| >sp|Q47944|SDH_GLUOY L-sorbose 1-dehydrogenase OS=Gluconobacter oxydans PE=3 SV=1 | Back alignment and function description |
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| >sp|Q8UH55|BETA_AGRT5 Choline dehydrogenase OS=Agrobacterium tumefaciens (strain C58 / ATCC 33970) GN=betA PE=3 SV=2 | Back alignment and function description |
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Close Homologs in the Non-Redundant Database Detected by BLAST
Original result of BLAST against Nonredundant Database
| GI | Alignment Graph | Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 522 | ||||||
| 193676365 | 1147 | PREDICTED: hypothetical protein LOC10015 | 0.971 | 0.442 | 0.341 | 4e-89 | |
| 193664531 | 628 | PREDICTED: glucose dehydrogenase [accept | 0.971 | 0.807 | 0.358 | 1e-80 | |
| 156551708 | 624 | PREDICTED: glucose dehydrogenase [accept | 0.977 | 0.817 | 0.352 | 1e-79 | |
| 340720647 | 626 | PREDICTED: glucose dehydrogenase [accept | 0.975 | 0.813 | 0.366 | 3e-79 | |
| 242018486 | 635 | glucose dehydrogenase precursor, putativ | 0.963 | 0.792 | 0.341 | 4e-79 | |
| 350401264 | 627 | PREDICTED: glucose dehydrogenase [accept | 0.975 | 0.811 | 0.363 | 9e-79 | |
| 307172021 | 630 | Glucose dehydrogenase [acceptor] [Campon | 0.975 | 0.807 | 0.359 | 3e-78 | |
| 383860470 | 624 | PREDICTED: glucose dehydrogenase [accept | 0.977 | 0.817 | 0.36 | 1e-77 | |
| 340730155 | 615 | PREDICTED: glucose dehydrogenase [accept | 0.959 | 0.814 | 0.370 | 2e-77 | |
| 328785230 | 625 | PREDICTED: glucose dehydrogenase [accept | 0.977 | 0.816 | 0.350 | 2e-77 |
| >gi|193676365|ref|XP_001949532.1| PREDICTED: hypothetical protein LOC100159632 [Acyrthosiphon pisum] | Back alignment and taxonomy information |
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Score = 335 bits (859), Expect = 4e-89, Method: Compositional matrix adjust.
Identities = 175/512 (34%), Positives = 289/512 (56%), Gaps = 5/512 (0%)
Query: 11 DHAYLAEPSQFAGLGVRNARIKITAGKGLGGSSAVQNILYQRGTSYDYENFAKLGYNGWG 70
D + +P G G+ +KI G+GLGGSS LY RG+ Y + K G W
Sbjct: 638 DWQFKIQPDSTTGFGI-GGNMKIHKGRGLGGSSITSAQLYVRGSEQLYNSLVKKGLKNWS 696
Query: 71 YDETLKYFVKSEDYRSVIYNESKA-VHGTQGYLPVGLFKNKENNIIREIFETSAQELGYP 129
Y+ T YF K E RS+ E+ ++G G +PV F+ E +++ +I + + +G
Sbjct: 697 YNTTETYFKKVERIRSITKTETNTTIYGKCGLIPVSKFRKTEVSVLEKIVCSGFEHIGCK 756
Query: 130 CPKDMNDRYVDVGFAELPGMTRYGLRFSAADAYLTPIAGKRTNLYVLKRSKVTKVIINDQ 189
D+N++ ++VGF + G+ + G + A AYL+PI G R NL V+K S+VTK+I+N
Sbjct: 757 KESDINEKDIEVGFVSMQGIIKNGRSINTAKAYLSPIFG-RENLKVMKYSRVTKIIVNKT 815
Query: 190 NV-ATGVEYVNSKGETVRVTANKEVILTAGAIANAQLLLLSGIGPKAHLDEVKIPVKQDL 248
+ ATGVE G+T+ + A EV+L AGA+ +AQ+LL SGIGPK HL E+++PV +DL
Sbjct: 816 EMKATGVEVQTKFGQTLTIKAKLEVLLCAGAVGSAQILLASGIGPKKHLSEMEVPVVKDL 875
Query: 249 RVGENLKLNAQFTGPVMAFSAPLKRTVYSQEMVFKYLVNRIGPLSNAGLWSFTGYIDT-L 307
+VGEN + FTG V+++ + +E+ FKYL GPLS SF G+++T +
Sbjct: 876 KVGENFLITPVFTGFVISYDKSVVCNQTDEEIAFKYLARHSGPLSRPNGMSFGGFLNTGM 935
Query: 308 QNTARPDLEIHLLYFQQNDIRNMCKIKRAYDFNDEVQTAYVNLNKRTDMGVISMSLVNPK 367
++ D+E+H Y +N +C++K + F+D + + Y LN + + +++L+N K
Sbjct: 936 SGSSFADIEVHQFYIPKNSYSKLCQLKSMFGFSDNLLSVYAKLNYERAISIFTIALINVK 995
Query: 368 SCGKVTLKSADPLAPPCIDTGILSEPEDLATLIRGTDYITRLEQTEAIRLAGGTLMSLNL 427
S K+ L+S +PL P I +L+E D+ + + ++++E+++ + L L ++L
Sbjct: 996 STSKILLRSKNPLDSPIIIGNMLTEKHDIKSFLEAIKLLSKIEKSDGMNLVNAKLEDIDL 1055
Query: 428 EACSQYPWRSTHSWTCYIRHLTTTTSNPVGTVMMGNADDPNAVVTPDLKVKGIKGLRVAD 487
+ C++Y ++ W C ++++ +TTS+ G+ MG D +AVV +L V GI LR
Sbjct: 1056 DGCAKYTKKTNEHWECLLKYMVSTTSSTAGSCRMGLETDTDAVVDGELNVIGISNLRAVG 1115
Query: 488 ISVLPNAIITQSDAISYMIGEKCADLVKTSYN 519
SVLP S M+ E+ ++K+ YN
Sbjct: 1116 RSVLPMITSAYSHVPCIMVAERAYGMIKSKYN 1147
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Source: Acyrthosiphon pisum Species: Acyrthosiphon pisum Genus: Acyrthosiphon Family: Aphididae Order: Hemiptera Class: Insecta Phylum: Arthropoda Superkingdom: Eukaryota |
| >gi|193664531|ref|XP_001948787.1| PREDICTED: glucose dehydrogenase [acceptor]-like [Acyrthosiphon pisum] | Back alignment and taxonomy information |
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| >gi|156551708|ref|XP_001600419.1| PREDICTED: glucose dehydrogenase [acceptor]-like [Nasonia vitripennis] | Back alignment and taxonomy information |
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| >gi|340720647|ref|XP_003398745.1| PREDICTED: glucose dehydrogenase [acceptor]-like [Bombus terrestris] | Back alignment and taxonomy information |
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| >gi|242018486|ref|XP_002429706.1| glucose dehydrogenase precursor, putative [Pediculus humanus corporis] gi|212514709|gb|EEB16968.1| glucose dehydrogenase precursor, putative [Pediculus humanus corporis] | Back alignment and taxonomy information |
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| >gi|350401264|ref|XP_003486103.1| PREDICTED: glucose dehydrogenase [acceptor]-like [Bombus impatiens] | Back alignment and taxonomy information |
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| >gi|307172021|gb|EFN63615.1| Glucose dehydrogenase [acceptor] [Camponotus floridanus] | Back alignment and taxonomy information |
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| >gi|383860470|ref|XP_003705712.1| PREDICTED: glucose dehydrogenase [acceptor]-like [Megachile rotundata] | Back alignment and taxonomy information |
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| >gi|340730155|ref|XP_003403352.1| PREDICTED: glucose dehydrogenase [acceptor]-like [Bombus terrestris] | Back alignment and taxonomy information |
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| >gi|328785230|ref|XP_003250566.1| PREDICTED: glucose dehydrogenase [acceptor]-like isoform 1 [Apis mellifera] gi|328785232|ref|XP_003250567.1| PREDICTED: glucose dehydrogenase [acceptor]-like isoform 2 [Apis mellifera] gi|328785234|ref|XP_003250568.1| PREDICTED: glucose dehydrogenase [acceptor]-like isoform 3 [Apis mellifera] | Back alignment and taxonomy information |
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Prediction of Gene Ontology (GO) Terms
Close Homologs with Gene Ontology terms Detected by BLAST
Original result of BLAST against Gene Ontology (AMIGO)
| ID |
Alignment graph |
Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 522 | ||||||
| FB|FBgn0030593 | 623 | CG9512 [Drosophila melanogaste | 0.961 | 0.805 | 0.354 | 2.5e-74 | |
| FB|FBgn0030594 | 646 | CG9509 [Drosophila melanogaste | 0.961 | 0.777 | 0.337 | 2.6e-70 | |
| FB|FBgn0030590 | 703 | CG9518 [Drosophila melanogaste | 0.975 | 0.724 | 0.347 | 3.3e-70 | |
| FB|FBgn0030598 | 626 | CG9503 [Drosophila melanogaste | 0.969 | 0.808 | 0.338 | 3.8e-69 | |
| FB|FBgn0030589 | 622 | CG9519 [Drosophila melanogaste | 0.967 | 0.811 | 0.328 | 9.7e-64 | |
| FB|FBgn0030588 | 621 | CG9521 [Drosophila melanogaste | 0.957 | 0.805 | 0.343 | 1.2e-63 | |
| FB|FBgn0039415 | 616 | CG6142 [Drosophila melanogaste | 0.978 | 0.829 | 0.319 | 1.6e-63 | |
| FB|FBgn0030591 | 865 | CG9517 [Drosophila melanogaste | 0.975 | 0.588 | 0.320 | 1.8e-62 | |
| FB|FBgn0030592 | 726 | CG9514 [Drosophila melanogaste | 0.978 | 0.703 | 0.340 | 2.4e-60 | |
| FB|FBgn0030596 | 633 | CG12398 [Drosophila melanogast | 0.969 | 0.799 | 0.326 | 2.2e-57 |
| FB|FBgn0030593 CG9512 [Drosophila melanogaster (taxid:7227)] | Back alignment and assigned GO terms |
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Score = 750 (269.1 bits), Expect = 2.5e-74, P = 2.5e-74
Identities = 183/516 (35%), Positives = 275/516 (53%)
Query: 8 SEFDHAYLAEPSQFAGLGVRNARIKITAGKGLGGSSAVQNILYQRGTSYDYENFAKLGYN 67
SE+D Y ++P+ A + ++ GK LGG++ + ++Y RGT D++++ + G
Sbjct: 109 SEWDWQYHSKPNGRACMAMKGESCHWPRGKMLGGTNGMNAMIYARGTRKDFDDWEERGNP 168
Query: 68 GWGYDETLKYFVKSEDYRSVIYNESKAVHGTQGYLPVGLFKNKENNIIREIFETSAQELG 127
GWGYDE LK+F K+ED RS + HG G P+GL +N R QE+G
Sbjct: 169 GWGYDEVLKHFRKAEDLRSTRPDYKPGDHGVGG--PMGLNNYVSDNEFRTTIRAGMQEMG 226
Query: 128 YPCPKDMNDRYVDVGFAELPGMTRYGLRFSAADAYLTPIAGKRT-NLYVLKRSKVTKVII 186
Y D + VG ++ G G R + A ++L K T NL++L+ + V K+ +
Sbjct: 227 YGSAPDFTEGSF-VGQMDILGTQDGGRRITTARSHLK----KNTPNLHILRHAHVKKINL 281
Query: 187 NDQNVATGVEYVNSKGETVRVTANKEVILTAGAIANAQLLLLSGIGPKAHLDEVKIPVKQ 246
+ N A V +V+ + V A+KEVI++AGAI + Q+LLLSGIGP HL + IPVK
Sbjct: 282 DRNNRAESVTFVHRGKKEYTVKASKEVIVSAGAIGSPQILLLSGIGPADHLKSLGIPVKL 341
Query: 247 DLRVGENLKLNAQFTGPVMAFSAPLKRTVYSQEMV---FKYLVNRIGPLSNAGLWSFTGY 303
DL VGENLK +A + R +E+V + L+ R L + + TG+
Sbjct: 342 DLPVGENLKDHASLP-MIFQIDKSTARKPTEEELVDAMYNLLMGRYSKLLHHEATALTGF 400
Query: 304 IDTLQ-NTARPDLEIHLLYFQQNDIRNMCKIKRAYDFNDEVQTAYVNLNKRTDMGVISMS 362
I+T PD++ +F + A FND V + ++ N+ T+ + +
Sbjct: 401 INTTSIEGPNPDIQT-TNFFSLMQSPELKGYVAATGFNDRVAKSILSANQETNTYITYLL 459
Query: 363 LVNPKSCGKVTLKSADPLAPPCIDTGILSEPEDLATLIRGTDYITRLEQTEAIRLAGGTL 422
+ P S G +TL+SA+ L P ID G +++ D+ T IR + L T+A L
Sbjct: 460 HLKPFSAGSLTLQSANYLDAPIIDPGYMTDERDVDTYIRALNIYKNLPNTKAFSEREAAL 519
Query: 423 MSLNLEACSQYPWRSTHSWTCYIRHLTTTTSNPVGTVMMGNADDPNAVVTPDLKVKGIKG 482
L+LEAC+ ++S W CYIRH+TTT +PVGT MG + DP AVV P L+V G KG
Sbjct: 520 HKLDLEACNGLTYQSDDYWRCYIRHMTTTVYHPVGTTRMGPSTDPTAVVDPQLRVHGAKG 579
Query: 483 LRVADISVLPNAIITQSDAISYMIGEKCADLVKTSY 518
LRV D S++P+ + ++A MI EK AD++K Y
Sbjct: 580 LRVIDASIMPDIVGANTNAACIMIAEKGADMIKEEY 615
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| FB|FBgn0030594 CG9509 [Drosophila melanogaster (taxid:7227)] | Back alignment and assigned GO terms |
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| FB|FBgn0030590 CG9518 [Drosophila melanogaster (taxid:7227)] | Back alignment and assigned GO terms |
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| FB|FBgn0030598 CG9503 [Drosophila melanogaster (taxid:7227)] | Back alignment and assigned GO terms |
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| FB|FBgn0030589 CG9519 [Drosophila melanogaster (taxid:7227)] | Back alignment and assigned GO terms |
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| FB|FBgn0030588 CG9521 [Drosophila melanogaster (taxid:7227)] | Back alignment and assigned GO terms |
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| FB|FBgn0039415 CG6142 [Drosophila melanogaster (taxid:7227)] | Back alignment and assigned GO terms |
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| FB|FBgn0030591 CG9517 [Drosophila melanogaster (taxid:7227)] | Back alignment and assigned GO terms |
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| FB|FBgn0030592 CG9514 [Drosophila melanogaster (taxid:7227)] | Back alignment and assigned GO terms |
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| FB|FBgn0030596 CG12398 [Drosophila melanogaster (taxid:7227)] | Back alignment and assigned GO terms |
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Prediction of Enzyme Commission (EC) Number
EC Number Prediction by Annotation Transfer from SWISS-PROT Entries
Original result of BLAST against SWISS-PROT
| ID | Name | Annotated EC number | Identity | Query coverage | Hit coverage | RBH(Q2H) | RBH(H2Q) |
| Q47944 | SDH_GLUOY | 1, ., 1, ., 9, 9, ., 3, 2 | 0.3021 | 0.8486 | 0.8342 | yes | N/A |
| P64264 | Y1310_MYCBO | 1, ., 1, ., -, ., - | 0.3384 | 0.8908 | 0.8806 | yes | N/A |
| P64263 | Y1279_MYCTU | 1, ., 1, ., -, ., - | 0.3384 | 0.8908 | 0.8806 | yes | N/A |
| A5WA97 | BETA_PSEP1 | 1, ., 1, ., 9, 9, ., 1 | 0.2930 | 0.9042 | 0.8353 | yes | N/A |
| Q2KB43 | BETA_RHIEC | 1, ., 1, ., 9, 9, ., 1 | 0.2903 | 0.8869 | 0.8433 | yes | N/A |
| B1J0W6 | BETA_ECOLC | 1, ., 1, ., 9, 9, ., 1 | 0.3030 | 0.9061 | 0.8507 | yes | N/A |
| B1LIJ7 | BETA_ECOSM | 1, ., 1, ., 9, 9, ., 1 | 0.3011 | 0.9061 | 0.8416 | yes | N/A |
| B9JBA2 | BETA_AGRRK | 1, ., 1, ., 9, 9, ., 1 | 0.2996 | 0.8793 | 0.8360 | yes | N/A |
| Q1RFM3 | BETA_ECOUT | 1, ., 1, ., 9, 9, ., 1 | 0.3030 | 0.9061 | 0.8416 | yes | N/A |
| A6U6Y8 | BETA_SINMW | 1, ., 1, ., 9, 9, ., 1 | 0.3019 | 0.8869 | 0.8433 | yes | N/A |
| B7N8L3 | BETA_ECOLU | 1, ., 1, ., 9, 9, ., 1 | 0.3087 | 0.9061 | 0.8507 | yes | N/A |
| A7ZWV4 | BETA_ECOHS | 1, ., 1, ., 9, 9, ., 1 | 0.3059 | 0.8908 | 0.8363 | yes | N/A |
| B7UJG4 | BETA_ECO27 | 1, ., 1, ., 9, 9, ., 1 | 0.2979 | 0.9080 | 0.8525 | yes | N/A |
| Q0T7N0 | BETA_SHIF8 | 1, ., 1, ., 9, 9, ., 1 | 0.3065 | 0.8946 | 0.8399 | yes | N/A |
| Q8NE62 | CHDH_HUMAN | 1, ., 1, ., 9, 9, ., 1 | 0.3069 | 0.8352 | 0.7340 | yes | N/A |
| P54223 | BETA_RHIME | 1, ., 1, ., 9, 9, ., 1 | 0.2980 | 0.8869 | 0.8433 | yes | N/A |
| Q8YFY2 | BETA_BRUME | 1, ., 1, ., 9, 9, ., 1 | 0.2730 | 0.8908 | 0.8469 | yes | N/A |
| B7M2V5 | BETA_ECO8A | 1, ., 1, ., 9, 9, ., 1 | 0.3059 | 0.8908 | 0.8363 | yes | N/A |
| B5Z1R0 | BETA_ECO5E | 1, ., 1, ., 9, 9, ., 1 | 0.3097 | 0.8908 | 0.8274 | yes | N/A |
| A7ZI50 | BETA_ECO24 | 1, ., 1, ., 9, 9, ., 1 | 0.3059 | 0.8908 | 0.8363 | yes | N/A |
| B7MCD0 | BETA_ECO45 | 1, ., 1, ., 9, 9, ., 1 | 0.3030 | 0.9061 | 0.8416 | yes | N/A |
| B1XE52 | BETA_ECODH | 1, ., 1, ., 9, 9, ., 1 | 0.3030 | 0.9061 | 0.8507 | yes | N/A |
| A5VPA6 | BETA_BRUO2 | 1, ., 1, ., 9, 9, ., 1 | 0.2767 | 0.8946 | 0.8506 | yes | N/A |
| B6I074 | BETA_ECOSE | 1, ., 1, ., 9, 9, ., 1 | 0.3059 | 0.8908 | 0.8363 | yes | N/A |
| B7L439 | BETA_ECO55 | 1, ., 1, ., 9, 9, ., 1 | 0.3059 | 0.8908 | 0.8363 | yes | N/A |
| A6T613 | BETA_KLEP7 | 1, ., 1, ., 9, 9, ., 1 | 0.3113 | 0.9022 | 0.8501 | yes | N/A |
| Q9WWW2 | ALKJ_PSEPU | 1, ., 1, ., 9, 9, ., - | 0.3034 | 0.8371 | 0.7916 | yes | N/A |
| Q8UH55 | BETA_AGRT5 | 1, ., 1, ., 9, 9, ., 1 | 0.2975 | 0.8927 | 0.8488 | yes | N/A |
| Q0TKW1 | BETA_ECOL5 | 1, ., 1, ., 9, 9, ., 1 | 0.3030 | 0.9061 | 0.8507 | yes | N/A |
| Q3K5H3 | BETA_PSEPF | 1, ., 1, ., 9, 9, ., 1 | 0.2967 | 0.9042 | 0.8324 | yes | N/A |
EC Number Prediction by EFICAz Software
No EC number assignment, probably not an enzyme!
Prediction of Functionally Associated Proteins
Conserved Domains and Related Protein Families
Conserved Domains Detected by RPS-BLAST
Original result of RPS-BLAST against CDD database
| ID | Alignment Graph | Length |
Definition |
E-value |
| Query | 522 | |||
| PRK02106 | 560 | PRK02106, PRK02106, choline dehydrogenase; Validat | 7e-73 | |
| COG2303 | 542 | COG2303, BetA, Choline dehydrogenase and related f | 1e-68 | |
| TIGR01810 | 532 | TIGR01810, betA, choline dehydrogenase | 3e-65 | |
| TIGR03970 | 487 | TIGR03970, Rv0697, dehydrogenase, Rv0697 family | 2e-46 | |
| pfam05199 | 139 | pfam05199, GMC_oxred_C, GMC oxidoreductase | 1e-30 | |
| pfam00732 | 218 | pfam00732, GMC_oxred_N, GMC oxidoreductase | 2e-29 | |
| PLN02785 | 587 | PLN02785, PLN02785, Protein HOTHEAD | 1e-16 |
| >gnl|CDD|235000 PRK02106, PRK02106, choline dehydrogenase; Validated | Back alignment and domain information |
|---|
Score = 241 bits (617), Expect = 7e-73
Identities = 170/536 (31%), Positives = 243/536 (45%), Gaps = 96/536 (17%)
Query: 10 FDHAYLAEPSQFAGLGVRNARIKITAGKGLGGSSAVQNILYQRGTSYDYENFAKL-GYNG 68
++ AY EP N R++ GK LGGSS++ ++Y RG + DY+N+A+L G G
Sbjct: 63 YNWAYETEPEPHMN----NRRMECPRGKVLGGSSSINGMVYIRGNAMDYDNWAELPGLEG 118
Query: 69 WGYDETLKYFVKSEDYRSVIYNESKAVHGTQGYLPVGLFK-NKENNIIREIFETSAQELG 127
W Y + L YF K+E G G P+ + + N + + F + + G
Sbjct: 119 WSYADCLPYFKKAETR----DGGEDDYRGGDG--PLSVTRGKPGTNPLFQAFVEAGVQAG 172
Query: 128 YPCPKDMNDRYVDVGFAELPGMTRYGLRFSAADAYLTPIAGKRTNLYVLKRSKVTKVIIN 187
YP D+N Y GF + G R+SAA AYL P A KR NL ++ + +++
Sbjct: 173 YPRTDDLNG-YQQEGFGPMDRTVTNGRRWSAARAYLDP-ALKRPNLTIVTHALTDRILF- 229
Query: 188 DQNVATGVEYVNSKGETVRVTANKEVILTAGAIANAQLLLLSGIGPKAHLDEVKIPVKQD 247
+ A GVEY G A +EVIL+AGAI + QLL LSGIGP HL E+ IPV D
Sbjct: 230 EGKRAVGVEYER-GGGRETARARREVILSAGAINSPQLLQLSGIGPAEHLKELGIPVVHD 288
Query: 248 LR-VGENLK----LNAQF--TGPVMAFSAPLKRTVYSQEMV-FKYLVNRIGP-LSN---A 295
L VGENL+ + Q+ PV + A LK +++ + ++L G SN A
Sbjct: 289 LPGVGENLQDHLEVYIQYECKQPVSLYPA-LK--WWNKPKIGAEWLFTGTGLGASNHFEA 345
Query: 296 GLWSFTGYIDTLQNTARPDLEIHLLYFQQNDIRNMCKIKRAYDFNDEVQ----TAYVNLN 351
G G+I + P+++ H L IR YD ++ V+ A+V
Sbjct: 346 G-----GFIRSRAGVDWPNIQYHFLPVA---IR--------YDGSNAVKGHGFQAHVGPM 389
Query: 352 KRTDMGVISMSLVNPKSCGKVTLKSADPLAPPCIDTGILSEPEDLATLIRGTDYITRLEQ 411
+ S G V LKSADP A P I +S +D E
Sbjct: 390 R-------------SPSRGSVKLKSADPRAHPSILFNYMSTEQD------------WREF 424
Query: 412 TEAIRLAGGTLMSLNLEACSQYPWRSTH------------SWTCYIRHLTTTTSNPVGTV 459
+AIRL T + A Y R ++ +R T +P T
Sbjct: 425 RDAIRL---TREIMAQPALDPYRGREISPGADVQTDEEIDAF---VREHAETAYHPSCTC 478
Query: 460 MMGNADDPNAVVTPDLKVKGIKGLRVADISVLPNAIITQSDAISYMIGEKCADLVK 515
MG DP AVV P+ +V G++GLRV D S++P +A + MI EK ADL++
Sbjct: 479 KMGT--DPMAVVDPEGRVHGVEGLRVVDASIMPTITNGNLNAPTIMIAEKAADLIR 532
|
Length = 560 |
| >gnl|CDD|225186 COG2303, BetA, Choline dehydrogenase and related flavoproteins [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
| >gnl|CDD|233581 TIGR01810, betA, choline dehydrogenase | Back alignment and domain information |
|---|
| >gnl|CDD|234421 TIGR03970, Rv0697, dehydrogenase, Rv0697 family | Back alignment and domain information |
|---|
| >gnl|CDD|218493 pfam05199, GMC_oxred_C, GMC oxidoreductase | Back alignment and domain information |
|---|
| >gnl|CDD|216089 pfam00732, GMC_oxred_N, GMC oxidoreductase | Back alignment and domain information |
|---|
| >gnl|CDD|215420 PLN02785, PLN02785, Protein HOTHEAD | Back alignment and domain information |
|---|
Conserved Domains Detected by HHsearch
Original result of HHsearch against CDD database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 522 | |||
| KOG1238|consensus | 623 | 100.0 | ||
| TIGR01810 | 532 | betA choline dehydrogenase. This enzyme is a membe | 100.0 | |
| PRK02106 | 560 | choline dehydrogenase; Validated | 100.0 | |
| COG2303 | 542 | BetA Choline dehydrogenase and related flavoprotei | 100.0 | |
| PLN02785 | 587 | Protein HOTHEAD | 100.0 | |
| TIGR02462 | 544 | pyranose_ox pyranose oxidase. Pyranose oxidase (al | 100.0 | |
| PF00732 | 296 | GMC_oxred_N: GMC oxidoreductase; InterPro: IPR0001 | 100.0 | |
| PF05199 | 144 | GMC_oxred_C: GMC oxidoreductase; InterPro: IPR0078 | 100.0 | |
| PRK12835 | 584 | 3-ketosteroid-delta-1-dehydrogenase; Reviewed | 97.22 | |
| PRK12837 | 513 | 3-ketosteroid-delta-1-dehydrogenase; Provisional | 97.08 | |
| PRK07843 | 557 | 3-ketosteroid-delta-1-dehydrogenase; Reviewed | 96.87 | |
| PRK12844 | 557 | 3-ketosteroid-delta-1-dehydrogenase; Reviewed | 96.73 | |
| PRK07121 | 492 | hypothetical protein; Validated | 96.48 | |
| PRK12845 | 564 | 3-ketosteroid-delta-1-dehydrogenase; Reviewed | 96.3 | |
| PF00890 | 417 | FAD_binding_2: FAD binding domain of the Pfam fami | 96.29 | |
| PF06039 | 488 | Mqo: Malate:quinone oxidoreductase (Mqo); InterPro | 96.26 | |
| PRK08274 | 466 | tricarballylate dehydrogenase; Validated | 96.06 | |
| PRK06134 | 581 | putative FAD-binding dehydrogenase; Reviewed | 95.99 | |
| PRK12839 | 572 | hypothetical protein; Provisional | 95.88 | |
| PRK12843 | 578 | putative FAD-binding dehydrogenase; Reviewed | 95.71 | |
| PRK06263 | 543 | sdhA succinate dehydrogenase flavoprotein subunit; | 95.7 | |
| PRK05675 | 570 | sdhA succinate dehydrogenase flavoprotein subunit; | 95.57 | |
| PRK06175 | 433 | L-aspartate oxidase; Provisional | 95.54 | |
| TIGR01811 | 603 | sdhA_Bsu succinate dehydrogenase or fumarate reduc | 95.52 | |
| PRK06452 | 566 | sdhA succinate dehydrogenase flavoprotein subunit; | 95.51 | |
| TIGR02734 | 502 | crtI_fam phytoene desaturase. Phytoene is converte | 95.41 | |
| TIGR01813 | 439 | flavo_cyto_c flavocytochrome c. This model describ | 95.4 | |
| TIGR01816 | 565 | sdhA_forward succinate dehydrogenase, flavoprotein | 95.36 | |
| PRK08958 | 588 | sdhA succinate dehydrogenase flavoprotein subunit; | 95.22 | |
| PRK12842 | 574 | putative succinate dehydrogenase; Reviewed | 95.12 | |
| PRK09078 | 598 | sdhA succinate dehydrogenase flavoprotein subunit; | 95.11 | |
| PRK07573 | 640 | sdhA succinate dehydrogenase flavoprotein subunit; | 94.99 | |
| PTZ00139 | 617 | Succinate dehydrogenase [ubiquinone] flavoprotein | 94.88 | |
| KOG2404|consensus | 477 | 94.64 | ||
| COG0029 | 518 | NadB Aspartate oxidase [Coenzyme metabolism] | 94.63 | |
| PLN02815 | 594 | L-aspartate oxidase | 94.61 | |
| PRK05945 | 575 | sdhA succinate dehydrogenase flavoprotein subunit; | 94.6 | |
| PLN00128 | 635 | Succinate dehydrogenase [ubiquinone] flavoprotein | 94.59 | |
| PRK08275 | 554 | putative oxidoreductase; Provisional | 94.5 | |
| TIGR03377 | 516 | glycerol3P_GlpA glycerol-3-phosphate dehydrogenase | 94.47 | |
| PRK07803 | 626 | sdhA succinate dehydrogenase flavoprotein subunit; | 94.42 | |
| PRK08626 | 657 | fumarate reductase flavoprotein subunit; Provision | 94.25 | |
| PRK07395 | 553 | L-aspartate oxidase; Provisional | 94.23 | |
| PRK06481 | 506 | fumarate reductase flavoprotein subunit; Validated | 94.19 | |
| PRK13977 | 576 | myosin-cross-reactive antigen; Provisional | 94.03 | |
| PF01266 | 358 | DAO: FAD dependent oxidoreductase; InterPro: IPR00 | 93.99 | |
| PRK09077 | 536 | L-aspartate oxidase; Provisional | 93.97 | |
| PRK09231 | 582 | fumarate reductase flavoprotein subunit; Validated | 93.84 | |
| PRK08641 | 589 | sdhA succinate dehydrogenase flavoprotein subunit; | 93.79 | |
| PRK11101 | 546 | glpA sn-glycerol-3-phosphate dehydrogenase subunit | 93.73 | |
| PRK12834 | 549 | putative FAD-binding dehydrogenase; Reviewed | 93.72 | |
| PLN02464 | 627 | glycerol-3-phosphate dehydrogenase | 93.72 | |
| TIGR01812 | 566 | sdhA_frdA_Gneg succinate dehydrogenase or fumarate | 93.63 | |
| PRK07057 | 591 | sdhA succinate dehydrogenase flavoprotein subunit; | 93.6 | |
| TIGR01176 | 580 | fum_red_Fp fumarate reductase, flavoprotein subuni | 93.59 | |
| PTZ00306 | 1167 | NADH-dependent fumarate reductase; Provisional | 93.59 | |
| PRK07512 | 513 | L-aspartate oxidase; Provisional | 93.4 | |
| PRK08205 | 583 | sdhA succinate dehydrogenase flavoprotein subunit; | 93.29 | |
| COG0579 | 429 | Predicted dehydrogenase [General function predicti | 93.27 | |
| COG0578 | 532 | GlpA Glycerol-3-phosphate dehydrogenase [Energy pr | 93.14 | |
| PRK06069 | 577 | sdhA succinate dehydrogenase flavoprotein subunit; | 93.07 | |
| PRK08071 | 510 | L-aspartate oxidase; Provisional | 92.95 | |
| PRK06854 | 608 | adenylylsulfate reductase subunit alpha; Validated | 92.95 | |
| TIGR00551 | 488 | nadB L-aspartate oxidase. L-aspartate oxidase is t | 92.7 | |
| TIGR02061 | 614 | aprA adenosine phosphosulphate reductase, alpha su | 92.22 | |
| PRK13339 | 497 | malate:quinone oxidoreductase; Reviewed | 92.15 | |
| TIGR01320 | 483 | mal_quin_oxido malate:quinone-oxidoreductase. This | 91.86 | |
| PF13738 | 203 | Pyr_redox_3: Pyridine nucleotide-disulphide oxidor | 91.67 | |
| PRK05257 | 494 | malate:quinone oxidoreductase; Validated | 91.52 | |
| TIGR02485 | 432 | CobZ_N-term precorrin 3B synthase CobZ. CobZ is es | 91.51 | |
| PRK13800 | 897 | putative oxidoreductase/HEAT repeat-containing pro | 91.48 | |
| PTZ00383 | 497 | malate:quinone oxidoreductase; Provisional | 91.08 | |
| TIGR03378 | 419 | glycerol3P_GlpB glycerol-3-phosphate dehydrogenase | 90.97 | |
| PRK07804 | 541 | L-aspartate oxidase; Provisional | 90.82 | |
| KOG0042|consensus | 680 | 90.26 | ||
| PRK05329 | 422 | anaerobic glycerol-3-phosphate dehydrogenase subun | 88.13 | |
| PF01134 | 392 | GIDA: Glucose inhibited division protein A; InterP | 87.83 | |
| PF13434 | 341 | K_oxygenase: L-lysine 6-monooxygenase (NADPH-requi | 87.1 | |
| PF12831 | 428 | FAD_oxidored: FAD dependent oxidoreductase; PDB: 3 | 86.96 | |
| TIGR02730 | 493 | carot_isom carotene isomerase. Members of this fam | 85.77 | |
| PLN02661 | 357 | Putative thiazole synthesis | 85.06 | |
| PRK04176 | 257 | ribulose-1,5-biphosphate synthetase; Provisional | 84.99 | |
| TIGR02733 | 492 | desat_CrtD C-3',4' desaturase CrtD. Members of thi | 84.79 | |
| PRK12266 | 508 | glpD glycerol-3-phosphate dehydrogenase; Reviewed | 83.95 | |
| TIGR02352 | 337 | thiamin_ThiO glycine oxidase ThiO. This family con | 82.53 | |
| COG1053 | 562 | SdhA Succinate dehydrogenase/fumarate reductase, f | 82.38 | |
| TIGR01373 | 407 | soxB sarcosine oxidase, beta subunit family, heter | 81.82 | |
| TIGR02731 | 453 | phytoene_desat phytoene desaturase. Plants and cya | 81.5 | |
| COG2081 | 408 | Predicted flavoproteins [General function predicti | 80.82 | |
| PRK06185 | 407 | hypothetical protein; Provisional | 80.57 | |
| PRK00711 | 416 | D-amino acid dehydrogenase small subunit; Validate | 80.31 |
| >KOG1238|consensus | Back alignment and domain information |
|---|
Probab=100.00 E-value=1e-95 Score=746.79 Aligned_cols=507 Identities=36% Similarity=0.550 Sum_probs=449.1
Q ss_pred cCCCCCcccceeecccccCcccCCCCceeeeecCcccchhhHhhcceeecCChhhHHHHHHhCCCCCCchhhHHHHHHhc
Q psy14407 3 SVLSLSEFDHAYLAEPSQFAGLGVRNARIKITAGKGLGGSSAVQNILYQRGTSYDYENFAKLGYNGWGYDETLKYFVKSE 82 (522)
Q Consensus 3 ~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~g~~vGGsS~~n~~~~~r~~~~df~~w~~~g~~~w~~~~l~pyy~~~e 82 (522)
..++.+.+||.|+|+||+++|..+.++++.|+|||+|||||++|+|+|.|+.+.|||.|.+.|+++|+|++++|||+|+|
T Consensus 104 ~~~q~s~~dw~y~t~Ps~~ac~~m~~~~c~wpRGrVLGGsS~iN~m~Y~RG~r~Dyd~W~~~gnpgW~y~~vl~yf~k~E 183 (623)
T KOG1238|consen 104 ANLQLSLYDWSYHTEPSQHACLAMSEDRCYWPRGRVLGGSSVLNAMFYVRGNRRDYDRWAAEGNPGWSYDEVLPYFKKSE 183 (623)
T ss_pred HHhccccccccCcCccChhhhhhhcCCceecCccceecccccccceEEecCCccchHHHHHhcCCCCCHHHHHHHHHHHh
Confidence 35778899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCCCCCCCCCCcCCCCcEeeecCCCCCCchHHHHHHHHHHHcCCCCCCCCCCCCcccceeeecccccCCeecchhhhh
Q psy14407 83 DYRSVIYNESKAVHGTQGYLPVGLFKNKENNIIREIFETSAQELGYPCPKDMNDRYVDVGFAELPGMTRYGLRFSAADAY 162 (522)
Q Consensus 83 ~~~~~~~~~~~~~~g~~gp~~v~~~~~~~~~~~~~~~~~a~~~~G~~~~~~~n~~~~~~G~~~~~~~~~~g~R~s~~~~~ 162 (522)
+...+.... .++|+..||+.+...++. +++...|.++.+++|.+ ..|+|+.. ..|+...+.++++|.|+|+..+|
T Consensus 184 ~~~~~~~~~-~~y~~~~g~~~ve~~~~~--~~~~~~~~~ag~e~G~~-~~D~nG~~-~tg~~~l~~t~~~g~R~s~~~a~ 258 (623)
T KOG1238|consen 184 DKVVPDPEL-TPYHGAGGPLLVEAGVYP--NNLFTAFHRAGTEIGGS-IFDRNGER-HTGASLLQYTIRNGIRVSLAKAY 258 (623)
T ss_pred hccCCCccc-CcccccCCcceecccccc--CchhhHhHHhHHhcCCC-ccCCCCcc-ccchhhhhccccCCEEEEehhhh
Confidence 997766554 458999999999988888 89999999999999954 44999988 89999888999999999999999
Q ss_pred cccccCCCCCeEEEcCcEEEEEEec-CCCeEEEEEEEecCCeEEEEEeCcEEEEcCcchhhhHHHHHhCCCChhhhhhCC
Q psy14407 163 LTPIAGKRTNLYVLKRSKVTKVIIN-DQNVATGVEYVNSKGETVRVTANKEVILTAGAIANAQLLLLSGIGPKAHLDEVK 241 (522)
Q Consensus 163 l~~~~~~~~n~~v~~~~~V~~I~~~-~~~~a~gV~~~~~~g~~~~v~A~k~VILaaGai~Tp~LLl~SGig~~~~l~~~g 241 (522)
|.++...|+||.+..++.|+||.+| .+.++.||++....|++++++|+||||||||||+||+|||+|||||+++|+++|
T Consensus 259 l~~~~~~R~NL~~~~~~~vtrvl~D~~~~~a~gv~~~~~~~~~~~v~a~kEVILSAGAi~SPQLLMLSGIGP~~~L~~~g 338 (623)
T KOG1238|consen 259 LKPIRLTRPNLHISRNAAVTRVLIDPAGKRAKGVEFVRDGGKEHTVKARKEVILSAGAINSPQLLMLSGIGPADHLKKLG 338 (623)
T ss_pred hhhhhccCccccccccceEEEEEEcCCCceEEEEEEEecCceeeeecccceEEEeccccCCHHHHHHcCCCcHHHHHhcC
Confidence 9998733899999999999999999 788999999998338999999999999999999999999999999999999999
Q ss_pred CCceeecc-ccccccccccccccEEEecCCC--ccccchHHHHHHHHhcCCCCccccccccEEEEEeCCCCC---CCCch
Q psy14407 242 IPVKQDLR-VGENLKLNAQFTGPVMAFSAPL--KRTVYSQEMVFKYLVNRIGPLSNAGLWSFTGYIDTLQNT---ARPDL 315 (522)
Q Consensus 242 i~~~~~~p-VG~~l~dh~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~g~~~~~g~~~~~~~~~~~~~~---~~p~~ 315 (522)
||++.|+| ||+||+||+...+..+..+... .........+.+|+..+.|++...+ ....+|++..... ++||+
T Consensus 339 Ipvv~dLP~VG~nLqDH~~~~~~~~~~~~~~~~~~~~~~~~~~~~yl~~~~G~~~~~~-~e~~~f~~t~~~~~~~~~PD~ 417 (623)
T KOG1238|consen 339 IPVVLDLPGVGQNLQDHPMNPGFVFSTNPVELSLIRLVGITTVGQYLEGGSGPLASPG-VETLGFINTVSSNLSLDWPDI 417 (623)
T ss_pred CCeeccCcccccccccccccceeeecCCCccccccccccchHHHHHHHcCCCCcccCc-ceeeEEeccccccCcCCCCCe
Confidence 99999999 9999999999863344444221 2223345678899999999998876 5788898876643 89999
Q ss_pred hhhhhhcccccchhhhhHhhhcccchHHHHHHhhcCCCCCeEEEEEeecccCcceEEEecCCCCCCCceeecCCCCChHH
Q psy14407 316 EIHLLYFQQNDIRNMCKIKRAYDFNDEVQTAYVNLNKRTDMGVISMSLVNPKSCGKVTLKSADPLAPPCIDTGILSEPED 395 (522)
Q Consensus 316 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~s~g~v~l~~~d~~~~p~i~~~~~~~~~D 395 (522)
++++..... ..+....+....+ ++.+.++........+.++..+++|.|||+|+|.++||++.|.|++||+.+|+|
T Consensus 418 ~~~~~~~~~-~~~~~~~~~~~~~---~~y~~~~~~~~~~~~~~i~~~~l~P~SrG~l~L~s~nP~~~P~I~~NY~~~p~D 493 (623)
T KOG1238|consen 418 ELHFVAGSL-SSDGLTALRKALG---EIYQALFGELTNSDSFVIFPKLLRPKSRGRLKLRSTNPRDNPLITPNYFTHPED 493 (623)
T ss_pred eEEeccccc-cccchhhhhhhcc---hHHHHhhhhhhcCceeEEeehhcCCCccceEEecCCCCCcCceeccCcCCCHHH
Confidence 988776654 2333233333333 555555555544556778888899999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHhcChhHHhhcccccccCCccCCCCCCCCHHHHHHHHHhhCCCCCcccccccccCCCCCCcccCCCC
Q psy14407 396 LATLIRGTDYITRLEQTEAIRLAGGTLMSLNLEACSQYPWRSTHSWTCYIRHLTTTTSNPVGTVMMGNADDPNAVVTPDL 475 (522)
Q Consensus 396 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~H~~Gt~rMG~~~~~~~VVD~~~ 475 (522)
++.++++++.+.++.++.+|++++..+...++|+|......+|++|+||+|....+.+|++|||+||++.|+++|||+++
T Consensus 494 v~~~vegi~~~~~l~~s~af~~~~~r~~~~~~~~c~~~~~~sd~yw~c~~R~~~~TiyH~~GtckMGp~~D~~aVVD~~l 573 (623)
T KOG1238|consen 494 VATLVEGIRTIIRLSNSKAFQRFGARLWKKPVPGCDLLAFLSDAYWECFCRHTVVTIYHYSGTCKMGPSSDPTAVVDPQL 573 (623)
T ss_pred HHHHHHHHHHHHHHHcCHHHHHhcchhccccCCCcccccCCCHHHHHHHHHhccceeeccCCceEeCCccCCCcccCCcc
Confidence 99999999999999999999999998888899999999999999999999999999999999999999888889999999
Q ss_pred ceeCcCCceEecccCCCCCCCchhHHHHHHHHHHHHHHHhhhcC
Q psy14407 476 KVKGIKGLRVADISVLPNAIITQSDAISYMIGEKCADLVKTSYN 519 (522)
Q Consensus 476 rv~g~~NL~V~DaSv~P~~~~~NPtlTi~Ala~r~Ad~i~~~~~ 519 (522)
||||++||||+|||+||.+|++||.+|+||||||+||.|+++|.
T Consensus 574 rV~Gv~~LRVVDaSimP~~psgN~nA~v~MIgek~ad~Ik~~~~ 617 (623)
T KOG1238|consen 574 RVHGVRGLRVVDASIMPESPSGNPNAPVMMIGEKAADMIKEEWL 617 (623)
T ss_pred eeccccCceEeeccccCCCCCCCccHHHHHHHHHHHHHHHHHhh
Confidence 99999999999999999999999999999999999999999874
|
|
| >TIGR01810 betA choline dehydrogenase | Back alignment and domain information |
|---|
| >PRK02106 choline dehydrogenase; Validated | Back alignment and domain information |
|---|
| >COG2303 BetA Choline dehydrogenase and related flavoproteins [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
| >PLN02785 Protein HOTHEAD | Back alignment and domain information |
|---|
| >TIGR02462 pyranose_ox pyranose oxidase | Back alignment and domain information |
|---|
| >PF00732 GMC_oxred_N: GMC oxidoreductase; InterPro: IPR000172 The glucose-methanol-choline (GMC) oxidoreductases are FAD flavoproteins oxidoreductases [, ] | Back alignment and domain information |
|---|
| >PF05199 GMC_oxred_C: GMC oxidoreductase; InterPro: IPR007867 The glucose-methanol-choline (GMC) oxidoreductases are FAD flavoproteins oxidoreductases [, ] | Back alignment and domain information |
|---|
| >PRK12835 3-ketosteroid-delta-1-dehydrogenase; Reviewed | Back alignment and domain information |
|---|
| >PRK12837 3-ketosteroid-delta-1-dehydrogenase; Provisional | Back alignment and domain information |
|---|
| >PRK07843 3-ketosteroid-delta-1-dehydrogenase; Reviewed | Back alignment and domain information |
|---|
| >PRK12844 3-ketosteroid-delta-1-dehydrogenase; Reviewed | Back alignment and domain information |
|---|
| >PRK07121 hypothetical protein; Validated | Back alignment and domain information |
|---|
| >PRK12845 3-ketosteroid-delta-1-dehydrogenase; Reviewed | Back alignment and domain information |
|---|
| >PF00890 FAD_binding_2: FAD binding domain of the Pfam family | Back alignment and domain information |
|---|
| >PF06039 Mqo: Malate:quinone oxidoreductase (Mqo); InterPro: IPR006231 The membrane-associated enzyme, malate:quinone-oxidoreductase, is an alternative to the better-known NAD-dependent malate dehydrogenase as part of the TCA cycle | Back alignment and domain information |
|---|
| >PRK08274 tricarballylate dehydrogenase; Validated | Back alignment and domain information |
|---|
| >PRK06134 putative FAD-binding dehydrogenase; Reviewed | Back alignment and domain information |
|---|
| >PRK12839 hypothetical protein; Provisional | Back alignment and domain information |
|---|
| >PRK12843 putative FAD-binding dehydrogenase; Reviewed | Back alignment and domain information |
|---|
| >PRK06263 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed | Back alignment and domain information |
|---|
| >PRK05675 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed | Back alignment and domain information |
|---|
| >PRK06175 L-aspartate oxidase; Provisional | Back alignment and domain information |
|---|
| >TIGR01811 sdhA_Bsu succinate dehydrogenase or fumarate reductase, flavoprotein subunit, Bacillus subtilis subgroup | Back alignment and domain information |
|---|
| >PRK06452 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed | Back alignment and domain information |
|---|
| >TIGR02734 crtI_fam phytoene desaturase | Back alignment and domain information |
|---|
| >TIGR01813 flavo_cyto_c flavocytochrome c | Back alignment and domain information |
|---|
| >TIGR01816 sdhA_forward succinate dehydrogenase, flavoprotein subunit, E | Back alignment and domain information |
|---|
| >PRK08958 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed | Back alignment and domain information |
|---|
| >PRK12842 putative succinate dehydrogenase; Reviewed | Back alignment and domain information |
|---|
| >PRK09078 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed | Back alignment and domain information |
|---|
| >PRK07573 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed | Back alignment and domain information |
|---|
| >PTZ00139 Succinate dehydrogenase [ubiquinone] flavoprotein subunit; Provisional | Back alignment and domain information |
|---|
| >KOG2404|consensus | Back alignment and domain information |
|---|
| >COG0029 NadB Aspartate oxidase [Coenzyme metabolism] | Back alignment and domain information |
|---|
| >PLN02815 L-aspartate oxidase | Back alignment and domain information |
|---|
| >PRK05945 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed | Back alignment and domain information |
|---|
| >PLN00128 Succinate dehydrogenase [ubiquinone] flavoprotein subunit | Back alignment and domain information |
|---|
| >PRK08275 putative oxidoreductase; Provisional | Back alignment and domain information |
|---|
| >TIGR03377 glycerol3P_GlpA glycerol-3-phosphate dehydrogenase, anaerobic, A subunit | Back alignment and domain information |
|---|
| >PRK07803 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed | Back alignment and domain information |
|---|
| >PRK08626 fumarate reductase flavoprotein subunit; Provisional | Back alignment and domain information |
|---|
| >PRK07395 L-aspartate oxidase; Provisional | Back alignment and domain information |
|---|
| >PRK06481 fumarate reductase flavoprotein subunit; Validated | Back alignment and domain information |
|---|
| >PRK13977 myosin-cross-reactive antigen; Provisional | Back alignment and domain information |
|---|
| >PF01266 DAO: FAD dependent oxidoreductase; InterPro: IPR006076 This entry includes various FAD dependent oxidoreductases: Glycerol-3-phosphate dehydrogenase (1 | Back alignment and domain information |
|---|
| >PRK09077 L-aspartate oxidase; Provisional | Back alignment and domain information |
|---|
| >PRK09231 fumarate reductase flavoprotein subunit; Validated | Back alignment and domain information |
|---|
| >PRK08641 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed | Back alignment and domain information |
|---|
| >PRK11101 glpA sn-glycerol-3-phosphate dehydrogenase subunit A; Provisional | Back alignment and domain information |
|---|
| >PRK12834 putative FAD-binding dehydrogenase; Reviewed | Back alignment and domain information |
|---|
| >PLN02464 glycerol-3-phosphate dehydrogenase | Back alignment and domain information |
|---|
| >TIGR01812 sdhA_frdA_Gneg succinate dehydrogenase or fumarate reductase, flavoprotein subunitGram-negative/mitochondrial subgroup | Back alignment and domain information |
|---|
| >PRK07057 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed | Back alignment and domain information |
|---|
| >TIGR01176 fum_red_Fp fumarate reductase, flavoprotein subunit | Back alignment and domain information |
|---|
| >PTZ00306 NADH-dependent fumarate reductase; Provisional | Back alignment and domain information |
|---|
| >PRK07512 L-aspartate oxidase; Provisional | Back alignment and domain information |
|---|
| >PRK08205 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed | Back alignment and domain information |
|---|
| >COG0579 Predicted dehydrogenase [General function prediction only] | Back alignment and domain information |
|---|
| >COG0578 GlpA Glycerol-3-phosphate dehydrogenase [Energy production and conversion] | Back alignment and domain information |
|---|
| >PRK06069 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed | Back alignment and domain information |
|---|
| >PRK08071 L-aspartate oxidase; Provisional | Back alignment and domain information |
|---|
| >PRK06854 adenylylsulfate reductase subunit alpha; Validated | Back alignment and domain information |
|---|
| >TIGR00551 nadB L-aspartate oxidase | Back alignment and domain information |
|---|
| >TIGR02061 aprA adenosine phosphosulphate reductase, alpha subunit | Back alignment and domain information |
|---|
| >PRK13339 malate:quinone oxidoreductase; Reviewed | Back alignment and domain information |
|---|
| >TIGR01320 mal_quin_oxido malate:quinone-oxidoreductase | Back alignment and domain information |
|---|
| >PF13738 Pyr_redox_3: Pyridine nucleotide-disulphide oxidoreductase; PDB: 3D1C_A 4A9W_B 2YLX_A 2YM2_A 2YLW_A 2YLR_A 2YM1_A 2YLS_A 1W4X_A 2YLT_A | Back alignment and domain information |
|---|
| >PRK05257 malate:quinone oxidoreductase; Validated | Back alignment and domain information |
|---|
| >TIGR02485 CobZ_N-term precorrin 3B synthase CobZ | Back alignment and domain information |
|---|
| >PRK13800 putative oxidoreductase/HEAT repeat-containing protein; Provisional | Back alignment and domain information |
|---|
| >PTZ00383 malate:quinone oxidoreductase; Provisional | Back alignment and domain information |
|---|
| >TIGR03378 glycerol3P_GlpB glycerol-3-phosphate dehydrogenase, anaerobic, B subunit | Back alignment and domain information |
|---|
| >PRK07804 L-aspartate oxidase; Provisional | Back alignment and domain information |
|---|
| >KOG0042|consensus | Back alignment and domain information |
|---|
| >PRK05329 anaerobic glycerol-3-phosphate dehydrogenase subunit B; Validated | Back alignment and domain information |
|---|
| >PF01134 GIDA: Glucose inhibited division protein A; InterPro: IPR002218 GidA is a tRNA modification enzyme found in bacteria and mitochondria | Back alignment and domain information |
|---|
| >PF13434 K_oxygenase: L-lysine 6-monooxygenase (NADPH-requiring); PDB: 3S61_B 3S5W_B | Back alignment and domain information |
|---|
| >PF12831 FAD_oxidored: FAD dependent oxidoreductase; PDB: 3ADA_A 1VRQ_A 1X31_A 3AD9_A 3AD8_A 3AD7_A 2GAG_A 2GAH_A | Back alignment and domain information |
|---|
| >TIGR02730 carot_isom carotene isomerase | Back alignment and domain information |
|---|
| >PLN02661 Putative thiazole synthesis | Back alignment and domain information |
|---|
| >PRK04176 ribulose-1,5-biphosphate synthetase; Provisional | Back alignment and domain information |
|---|
| >TIGR02733 desat_CrtD C-3',4' desaturase CrtD | Back alignment and domain information |
|---|
| >PRK12266 glpD glycerol-3-phosphate dehydrogenase; Reviewed | Back alignment and domain information |
|---|
| >TIGR02352 thiamin_ThiO glycine oxidase ThiO | Back alignment and domain information |
|---|
| >COG1053 SdhA Succinate dehydrogenase/fumarate reductase, flavoprotein subunit [Energy production and conversion] | Back alignment and domain information |
|---|
| >TIGR01373 soxB sarcosine oxidase, beta subunit family, heterotetrameric form | Back alignment and domain information |
|---|
| >TIGR02731 phytoene_desat phytoene desaturase | Back alignment and domain information |
|---|
| >COG2081 Predicted flavoproteins [General function prediction only] | Back alignment and domain information |
|---|
| >PRK06185 hypothetical protein; Provisional | Back alignment and domain information |
|---|
| >PRK00711 D-amino acid dehydrogenase small subunit; Validated | Back alignment and domain information |
|---|
Homologous Structure Templates
Structure Templates Detected by BLAST
Original result of BLAST against Protein Data Bank
| ID | Alignment Graph | Length |
Definition |
E-value | |
| Query | 522 | ||||
| 2jbv_A | 546 | Crystal Structure Of Choline Oxidase Reveals Insigh | 6e-36 | ||
| 3ljp_A | 546 | Crystal Structure Of Choline Oxidase V464a Mutant L | 6e-36 | ||
| 3nne_A | 546 | Crystal Structure Of Choline Oxidase S101a Mutant L | 1e-35 | ||
| 3fim_B | 566 | Crystal Structure Of Aryl-Alcohol-Oxidase From Pleu | 2e-30 | ||
| 3q9t_A | 577 | Crystal Structure Analysis Of Formate Oxidase Lengt | 2e-26 | ||
| 1gpe_A | 587 | Glucose Oxidase From Penicillium Amagasakiense Leng | 4e-18 | ||
| 1cf3_A | 583 | Glucose Oxidase From Apergillus Niger Length = 583 | 1e-16 | ||
| 3t37_A | 526 | Crystal Structure Of Pyridoxine 4-Oxidase From Meso | 2e-16 | ||
| 3gdn_A | 521 | Almond Hydroxynitrile Lyase In Complex With Benzald | 3e-08 | ||
| 1ju2_A | 536 | Crystal Structure Of The Hydroxynitrile Lyase From | 3e-08 | ||
| 3red_A | 521 | 3.0 A Structure Of The Prunus Mume Hydroxynitrile L | 1e-07 |
| >pdb|2JBV|A Chain A, Crystal Structure Of Choline Oxidase Reveals Insights Into The Catalytic Mechanism Length = 546 | Back alignment and structure |
|
| >pdb|3LJP|A Chain A, Crystal Structure Of Choline Oxidase V464a Mutant Length = 546 | Back alignment and structure |
| >pdb|3NNE|A Chain A, Crystal Structure Of Choline Oxidase S101a Mutant Length = 546 | Back alignment and structure |
| >pdb|3FIM|B Chain B, Crystal Structure Of Aryl-Alcohol-Oxidase From Pleurotus Eryingii Length = 566 | Back alignment and structure |
| >pdb|3Q9T|A Chain A, Crystal Structure Analysis Of Formate Oxidase Length = 577 | Back alignment and structure |
| >pdb|1GPE|A Chain A, Glucose Oxidase From Penicillium Amagasakiense Length = 587 | Back alignment and structure |
| >pdb|1CF3|A Chain A, Glucose Oxidase From Apergillus Niger Length = 583 | Back alignment and structure |
| >pdb|3T37|A Chain A, Crystal Structure Of Pyridoxine 4-Oxidase From Mesorbium Loti Length = 526 | Back alignment and structure |
| >pdb|3GDN|A Chain A, Almond Hydroxynitrile Lyase In Complex With Benzaldehyde Length = 521 | Back alignment and structure |
| >pdb|1JU2|A Chain A, Crystal Structure Of The Hydroxynitrile Lyase From Almond Length = 536 | Back alignment and structure |
| >pdb|3RED|A Chain A, 3.0 A Structure Of The Prunus Mume Hydroxynitrile Lyase Isozyme-1 Length = 521 | Back alignment and structure |
Structure Templates Detected by RPS-BLAST
Original result of RPS-BLAST against PDB70 database
| >1gpe_A Protein (glucose oxidase); oxidoreductase(flavoprotein); HET: NAG BMA MAN FAD; 1.80A {Penicillium amagasakiense} SCOP: c.3.1.2 d.16.1.1 Length = 587 | Back alignment and structure |
|---|
Score = 365 bits (939), Expect = e-120
Identities = 119/542 (21%), Positives = 193/542 (35%), Gaps = 68/542 (12%)
Query: 8 SEFDHAYLAEPSQFAGLGVRNARIKITAGKGLGGSSAVQNILYQRGTSYDYENFAKL-GY 66
+ D YL P + R I AGKGLGGS+ + + R +++ K+ G
Sbjct: 79 TTVDQNYLTVP----LINNR--TNNIKAGKGLGGSTLINGDSWTRPDKVQIDSWEKVFGM 132
Query: 67 NGWGYDETLKYFVKSEDYR-------SVIYNESKAVHGTQGYLPVGLFKN-KENNIIREI 118
GW +D +Y K+E R + ++ + HGT G + G N + + I +
Sbjct: 133 EGWNWDNMFEYMKKAEAARTPTAAQLAAGHSFNATCHGTNGTVQSGARDNGQPWSPIMKA 192
Query: 119 FETSAQELGYPCPKDMNDRYVDVGFAELPG-MTRYGLRFSAADAYLTPIAGKRTNLYVLK 177
+ LG P +D G + + + +R AA A+L P +R+NL +L
Sbjct: 193 LMNTVSALGVPVQQDFL-CGHPRGVSMIMNNLDENQVRVDAARAWLLPNY-QRSNLEILT 250
Query: 178 RSKVTKVIINDQN---VATGVEYVNSKGETVRVTANKEVILTAGAIANAQLLLLSGIGPK 234
V KV+ A GV + +K V A EV+L AG+ + +L SGIG K
Sbjct: 251 GQMVGKVLFKQTASGPQAVGVNFGTNKAVNFDVFAKHEVLLAAGSAISPLILEYSGIGLK 310
Query: 235 AHLDEVKIPVKQDLRVGENL----------KLNAQFTGPVMAFSAPLKRTVYSQEMVFKY 284
+ LD+ + DL VG N+ + ++ G A E Y
Sbjct: 311 SVLDQANVTQLLDLPVGINMQDQTTTTVSSRASSAGAGQGQAVFFANF-----TETFGDY 365
Query: 285 LVNRIGPL-SNAGLW-SFTGYIDTLQNTARPDLEIHLLYFQQNDIRNMCKIKRAYDFNDE 342
L + W T N ++ +N + +
Sbjct: 366 APQARDLLNTKLDQWAEETVARGGFHNVTALKVQYE---NYRNWLLD------------- 409
Query: 343 VQTAYVNLNKRTDMGV-ISMSLVNPKSCGKVTLKSADPL-APPCIDTGILSEPEDLATLI 400
A+ L T+ + + + P + G V + S+DP D DL
Sbjct: 410 EDVAFAELFMDTEGKINFDLWDLIPFTRGSVHILSSDPYLWQFANDPKFFLNEFDLLGQA 469
Query: 401 RGTDYITRLEQTEAI-RLAGGTLMSLNLEACSQYPWRSTHSWTCYIRHLTTTTSNPVGTV 459
+ L A+ G + + + W+ Y+ + V +
Sbjct: 470 AASKLARDLTSQGAMKEYFAGETLP----GYNLVQNATLSQWSDYVLQNFRPNWHAVSSC 525
Query: 460 MMGNADDPNAVVTPDLKVKGIKGLRVADISVLPNAII---TQSDAISYMIGEKCADLVKT 516
M + + VV KV G +GLRV D S+ P + I Y + K AD +
Sbjct: 526 SMM-SRELGGVVDATAKVYGTQGLRVIDGSIPPT-QVSSHVM--TIFYGMALKVADAILD 581
Query: 517 SY 518
Y
Sbjct: 582 DY 583
|
| >3fim_B ARYL-alcohol oxidase; AAO, lignin degradation, oxidoreductase, flavoprotein; HET: FAD; 2.55A {Pleurotus eryngii} Length = 566 | Back alignment and structure |
|---|
| >3qvp_A Glucose oxidase; oxidoreductase; HET: NAG BMA MAN FAD; 1.20A {Aspergillus niger} PDB: 1gal_A* 1cf3_A* 3qvr_A* Length = 583 | Back alignment and structure |
|---|
| >3q9t_A Choline dehydrogenase and related flavoproteins; glucose-methanol-choline oxidoreductase family, formate OXID formyl-FAD, oxidoreductase; HET: FAY; 2.24A {Aspergillus oryzae} Length = 577 | Back alignment and structure |
|---|
| >2jbv_A Choline oxidase; alcohol oxidation, flavoenyzme oxidase, covalently linked FAD, C4A-adduct, flavoprotein, oxidoreductase; HET: FAO; 1.86A {Arthrobacter globiformis} PDB: 3nne_A* 3ljp_A* Length = 546 | Back alignment and structure |
|---|
| >3t37_A Probable dehydrogenase; BET alpha beta fold, ADP binding, oxidoreductase; HET: FAD; 2.19A {Mesorhizobium loti} Length = 526 | Back alignment and structure |
|---|
| >1kdg_A CDH, cellobiose dehydrogenase; GMC oxidoreductase, PHBH fold, alpha/beta structure, rossman 6-hydroxylated FAD, oxidoreductase; HET: NAG MAN 6FA EMT; 1.50A {Phanerochaete chrysosporium} SCOP: c.3.1.2 d.16.1.1 PDB: 1naa_A* Length = 546 | Back alignment and structure |
|---|
| >1ju2_A HydroxynitrIle lyase; flavin, GMC oxidoreductase, almond, cyanogenesis; HET: NAG NDG FUC BMA MAN FAD; 1.47A {Prunus dulcis} SCOP: c.3.1.2 d.16.1.1 PDB: 3gdp_A* 3gdn_A* Length = 536 | Back alignment and structure |
|---|
| >3pl8_A Pyranose 2-oxidase; substrate complex, H167A mutant, homotetramer, GMC oxidoredu PHBH fold, rossmann domain, oxidoreductase; HET: FAD MES G3F; 1.35A {Trametes ochracea} PDB: 2igo_A* 3lsm_A* 2ign_A* 3k4c_A* 1tt0_A* 2igk_A* 3k4b_A* 3lsk_A* 3bg6_A* 3lsh_A* 3lsi_A* 2igm_A* 3k4j_A* 3k4m_A* 3bg7_A* 3k4k_A* 3k4l_A* 3bly_A* 1tzl_A* 3fdy_A* ... Length = 623 | Back alignment and structure |
|---|
| >1n4w_A CHOD, cholesterol oxidase; flavoenzyme, steroid metabolism, oxidoreductase, atomic RESO; HET: FAD; 0.92A {Streptomyces SP} SCOP: c.3.1.2 d.16.1.1 PDB: 1b4v_A* 1n1p_A* 1n4u_A* 1n4v_A* 1mxt_A* 2gew_A* 1b8s_A* 3gyi_A* 1cc2_A* 3gyj_A* 1ijh_A* 1cbo_A* 3b3r_A* 3b6d_A* 3cnj_A* Length = 504 | Back alignment and structure |
|---|
| >1n4w_A CHOD, cholesterol oxidase; flavoenzyme, steroid metabolism, oxidoreductase, atomic RESO; HET: FAD; 0.92A {Streptomyces SP} SCOP: c.3.1.2 d.16.1.1 PDB: 1b4v_A* 1n1p_A* 1n4u_A* 1n4v_A* 1mxt_A* 2gew_A* 1b8s_A* 3gyi_A* 1cc2_A* 3gyj_A* 1ijh_A* 1cbo_A* 3b3r_A* 3b6d_A* 3cnj_A* Length = 504 | Back alignment and structure |
|---|
| >1coy_A Cholesterol oxidase; oxidoreductase(oxygen receptor); HET: AND FAD; 1.80A {Brevibacterium sterolicum} SCOP: c.3.1.2 d.16.1.1 PDB: 3cox_A* Length = 507 | Back alignment and structure |
|---|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
| >1qo8_A Flavocytochrome C3 fumarate reductase; oxidoreductase; HET: HEM FAD; 2.15A {Shewanella frigidimarina} SCOP: a.138.1.3 c.3.1.4 d.168.1.1 Length = 566 | Back alignment and structure |
|---|
| >1y0p_A Fumarate reductase flavoprotein subunit; flavocytochrome, mesaconate, oxidoreductase; HET: HEM FAD; 1.50A {Shewanella frigidimarina} SCOP: a.138.1.3 c.3.1.4 d.168.1.1 PDB: 1qjd_A* 2b7s_A* 1jry_A* 2b7r_A* 1ksu_A* 1jrz_A* 1jrx_A* 1m64_A* 1p2h_A* 1p2e_A* 1kss_A* 1e39_A* 1q9i_A* 1lj1_A* Length = 571 | Back alignment and structure |
|---|
| >1d4d_A Flavocytochrome C fumarate reductase; oxidoreductase; HET: HEM FAD; 2.50A {Shewanella oneidensis} SCOP: a.138.1.3 c.3.1.4 d.168.1.1 PDB: 1d4e_A* 1d4c_A* Length = 572 | Back alignment and structure |
|---|
Structure Templates Detected by HHsearch
Original result of HHsearch against PDB70 database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 522 | |||
| 3fim_B | 566 | ARYL-alcohol oxidase; AAO, lignin degradation, oxi | 100.0 | |
| 3qvp_A | 583 | Glucose oxidase; oxidoreductase; HET: NAG BMA MAN | 100.0 | |
| 3q9t_A | 577 | Choline dehydrogenase and related flavoproteins; g | 100.0 | |
| 1gpe_A | 587 | Protein (glucose oxidase); oxidoreductase(flavopro | 100.0 | |
| 2jbv_A | 546 | Choline oxidase; alcohol oxidation, flavoenyzme ox | 100.0 | |
| 3t37_A | 526 | Probable dehydrogenase; BET alpha beta fold, ADP b | 100.0 | |
| 1ju2_A | 536 | HydroxynitrIle lyase; flavin, GMC oxidoreductase, | 100.0 | |
| 1kdg_A | 546 | CDH, cellobiose dehydrogenase; GMC oxidoreductase, | 100.0 | |
| 1n4w_A | 504 | CHOD, cholesterol oxidase; flavoenzyme, steroid me | 100.0 | |
| 1coy_A | 507 | Cholesterol oxidase; oxidoreductase(oxygen recepto | 100.0 | |
| 3pl8_A | 623 | Pyranose 2-oxidase; substrate complex, H167A mutan | 100.0 | |
| 4at0_A | 510 | 3-ketosteroid-delta4-5alpha-dehydrogenase; oxidore | 97.77 | |
| 1qo8_A | 566 | Flavocytochrome C3 fumarate reductase; oxidoreduct | 95.62 | |
| 1y0p_A | 571 | Fumarate reductase flavoprotein subunit; flavocyto | 95.46 | |
| 1d4d_A | 572 | Flavocytochrome C fumarate reductase; oxidoreducta | 95.43 | |
| 3da1_A | 561 | Glycerol-3-phosphate dehydrogenase; NESG BHR167 Q9 | 94.83 | |
| 2h88_A | 621 | Succinate dehydrogenase flavoprotein subunit; comp | 94.81 | |
| 2wdq_A | 588 | Succinate dehydrogenase flavoprotein subunit; succ | 94.44 | |
| 2rgh_A | 571 | Alpha-glycerophosphate oxidase; flavoprotein oxida | 94.43 | |
| 1kf6_A | 602 | Fumarate reductase flavoprotein; respiration, fuma | 94.29 | |
| 2bs2_A | 660 | Quinol-fumarate reductase flavoprotein subunit A; | 93.84 | |
| 1chu_A | 540 | Protein (L-aspartate oxidase); flavoenzyme, NAD bi | 93.79 | |
| 3dme_A | 369 | Conserved exported protein; structural genomics, P | 92.78 | |
| 4dgk_A | 501 | Phytoene dehydrogenase; the FAD/NAD(P)-binding ros | 92.77 | |
| 3gyx_A | 662 | Adenylylsulfate reductase; oxidoreductase; HET: FA | 92.25 | |
| 1jnr_A | 643 | Adenylylsulfate reductase; oxidoreductase; HET: FA | 91.98 | |
| 3e1t_A | 512 | Halogenase; flavoprotein; HET: FAD; 2.05A {Chondro | 91.64 | |
| 3dje_A | 438 | Fructosyl amine: oxygen oxidoreductase; fructosyl- | 91.07 | |
| 1rp0_A | 284 | ARA6, thiazole biosynthetic enzyme; protein ligand | 90.99 | |
| 1y56_B | 382 | Sarcosine oxidase; dehydrogenase, protein-protein | 90.58 | |
| 3ka7_A | 425 | Oxidoreductase; structural genomics, PSI-2, protei | 90.18 | |
| 3atr_A | 453 | Conserved archaeal protein; saturating double bond | 90.13 | |
| 2i0z_A | 447 | NAD(FAD)-utilizing dehydrogenases; structural geno | 89.69 | |
| 2qcu_A | 501 | Aerobic glycerol-3-phosphate dehydrogenase; glycer | 89.5 | |
| 2gag_B | 405 | Heterotetrameric sarcosine oxidase beta-subunit; f | 89.09 | |
| 3cgv_A | 397 | Geranylgeranyl reductase related protein; NP_39399 | 88.73 | |
| 3f8d_A | 323 | Thioredoxin reductase (TRXB-3); redox protein, nuc | 88.63 | |
| 3axb_A | 448 | Putative oxidoreductase; dinucleotide-binding fold | 87.72 | |
| 3nyc_A | 381 | D-arginine dehydrogenase; FAD, imino-arginine, oxi | 87.23 | |
| 3cty_A | 319 | Thioredoxin reductase; FAD, oxidoreductase, flavin | 87.05 | |
| 3r9u_A | 315 | Thioredoxin reductase; structural genomics, center | 85.64 | |
| 1fl2_A | 310 | Alkyl hydroperoxide reductase subunit F; reactive | 85.23 | |
| 3itj_A | 338 | Thioredoxin reductase 1; disulfide B flavoprotein, | 85.09 | |
| 3lxd_A | 415 | FAD-dependent pyridine nucleotide-disulphide oxido | 84.87 | |
| 3fg2_P | 404 | Putative rubredoxin reductase; ferredoxin reductas | 84.76 | |
| 3ab1_A | 360 | Ferredoxin--NADP reductase; oxidoreductase, electr | 84.41 | |
| 1mo9_A | 523 | ORF3; nucleotide binding motifs, nucleotide bindin | 83.51 | |
| 3i3l_A | 591 | Alkylhalidase CMLS; flavin-dependent halogenase, c | 83.04 | |
| 1pj5_A | 830 | N,N-dimethylglycine oxidase; channelling, FAD bind | 82.41 | |
| 1trb_A | 320 | Thioredoxin reductase; oxidoreductase(flavoenzyme) | 82.0 | |
| 3nix_A | 421 | Flavoprotein/dehydrogenase; structural genomics, P | 81.77 | |
| 2gmh_A | 584 | Electron transfer flavoprotein-ubiquinone oxidored | 81.38 | |
| 3nrn_A | 421 | Uncharacterized protein PF1083; alpha-beta protein | 80.51 | |
| 3nlc_A | 549 | Uncharacterized protein VP0956; FAD-binding protei | 80.33 | |
| 2oln_A | 397 | NIKD protein; flavoprotein, rossmann fold, oxidore | 80.14 |
| >3fim_B ARYL-alcohol oxidase; AAO, lignin degradation, oxidoreductase, flavoprotein; HET: FAD; 2.55A {Pleurotus eryngii} | Back alignment and structure |
|---|
Probab=100.00 E-value=3.6e-90 Score=736.47 Aligned_cols=476 Identities=27% Similarity=0.359 Sum_probs=407.6
Q ss_pred CCcccceeecccccCcccCCCCceeeeecCcccchhhHhhcceeecCChhhHHHHHHh-CCCCCCchhhHHHHHHhccCC
Q psy14407 7 LSEFDHAYLAEPSQFAGLGVRNARIKITAGKGLGGSSAVQNILYQRGTSYDYENFAKL-GYNGWGYDETLKYFVKSEDYR 85 (522)
Q Consensus 7 ~~~~~w~~~~~~~~~~~~~~~~~~~~~~~g~~vGGsS~~n~~~~~r~~~~df~~w~~~-g~~~w~~~~l~pyy~~~e~~~ 85 (522)
++.+||.|.++||+ +++++.+.++|||+|||||+||+|+|.|+.+.|||.|++. |+++|+|++|+|||+|+|++.
T Consensus 56 ~~~~~w~~~t~pq~----~~~~r~~~~~rGk~lGGsS~iN~m~~~Rg~~~d~d~W~~~~G~~gWs~~~~~pyf~k~E~~~ 131 (566)
T 3fim_B 56 NSIFDWNYTTTAQA----GYNGRSIAYPRGRMLGGSSSVHYMVMMRGSTEDFDRYAAVTGDEGWNWDNIQQFVRKNEMVV 131 (566)
T ss_dssp SSTTBCCCBCCCCG----GGTTCCCBCCCBCBTTGGGGTSCCBCCCCCHHHHHHHHHHHTCTTSSHHHHHHHHHHHEEEC
T ss_pred CCccccccccccCC----CCCCceEeccCCcEEcCcccccceEEecCCHHHHHHHHhcCCCCCcCHHHHHHHHHHHhccC
Confidence 47899999999999 5789999999999999999999999999999999999998 999999999999999999997
Q ss_pred CCCC------CCCCCCcCCCCcEeeecCCCCCCchHHHHHHHHHHHc--CCCCCCCCCCCCcccceeeecccccCCeecc
Q psy14407 86 SVIY------NESKAVHGTQGYLPVGLFKNKENNIIREIFETSAQEL--GYPCPKDMNDRYVDVGFAELPGMTRYGLRFS 157 (522)
Q Consensus 86 ~~~~------~~~~~~~g~~gp~~v~~~~~~~~~~~~~~~~~a~~~~--G~~~~~~~n~~~~~~G~~~~~~~~~~g~R~s 157 (522)
.+.. ..++..||..||++++++++. .++...|.++++++ |++...|+|++. ..|++.++.++++|.|+|
T Consensus 132 ~~~~~~~~~~~~~~~~hG~~Gp~~v~~~~~~--~~~~~~~~~a~~~~~~G~~~~~d~n~~~-~~G~~~~~~~~~~g~R~s 208 (566)
T 3fim_B 132 PPADNHNTSGEFIPAVHGTNGSVSISLPGFP--TPLDDRVLATTQEQSEEFFFNPDMGTGH-PLGISWSIASVGNGQRSS 208 (566)
T ss_dssp CCTTCCCCTTTSCGGGSCBSSSEEEBSCSSC--CTHHHHHHHHHHHTHHHHCBCSCGGGSC-CCEEEECCBSEETTEECC
T ss_pred CccccccccccCCccccCCCCCeeeecCCCC--CHHHHHHHHHHHHHhcCCCccCCCCCCC-cceEEeeeeecCCCEEcC
Confidence 6532 123578999999999988877 89999999999999 999888999888 899999999999999999
Q ss_pred hhhhhcccccCCCCCeEEEcCcEEEEEEec---CC-CeEEEEEEEecCC-eEEEEEeCcEEEEcCcchhhhHHHHHhCCC
Q psy14407 158 AADAYLTPIAGKRTNLYVLKRSKVTKVIIN---DQ-NVATGVEYVNSKG-ETVRVTANKEVILTAGAIANAQLLLLSGIG 232 (522)
Q Consensus 158 ~~~~~l~~~~~~~~n~~v~~~~~V~~I~~~---~~-~~a~gV~~~~~~g-~~~~v~A~k~VILaaGai~Tp~LLl~SGig 232 (522)
+..+||.++. .++|++|++++.|+||+++ ++ ++|+||++.+.+| +.++++|+|+||||||||+||+|||+||||
T Consensus 209 a~~ayL~p~~-~r~NL~Vlt~a~V~rIl~~~~~~g~~rA~GVe~~~~~g~~~~~v~A~kEVILsAGai~SPqlL~lSGIG 287 (566)
T 3fim_B 209 SSTAYLRPAQ-SRPNLSVLINAQVTKLVNSGTTNGLPAFRCVEYAEQEGAPTTTVCAKKEVVLSAGSVGTPILLQLSGIG 287 (566)
T ss_dssp HHHHTHHHHT-TCTTEEEESSCEEEEEECCEEETTEEECCEEEEESSTTSCCEEEEEEEEEEECCHHHHHHHHHHHTTEE
T ss_pred HHHHHhhhhc-cCCCeEEECCCEEEEEEeecCCCCCCEEEEEEEEECCCceEEEEEeeeEEEEecCCcCChHHHHhcCCC
Confidence 9999999988 8999999999999999997 34 6999999997446 889999999999999999999999999999
Q ss_pred ChhhhhhCCCCceeecc-ccccccccccccccEEEecCCC-cc----c-cchHHHHHHHHhcCCCCccccccccEEEEEe
Q psy14407 233 PKAHLDEVKIPVKQDLR-VGENLKLNAQFTGPVMAFSAPL-KR----T-VYSQEMVFKYLVNRIGPLSNAGLWSFTGYID 305 (522)
Q Consensus 233 ~~~~l~~~gi~~~~~~p-VG~~l~dh~~~~~~~~~~~~~~-~~----~-~~~~~~~~~~~~~~~g~~~~~g~~~~~~~~~ 305 (522)
|+++|+++||+++.|+| ||+||+||+.+. +.|..+... .. . ........+|...+.||++..+ ....+|++
T Consensus 288 p~~~L~~~gI~vv~dlPgVG~NLqDH~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~l~~~~-~~~~~f~~ 365 (566)
T 3fim_B 288 DENDLSSVGIDTIVNNPSVGRNLSDHLLLP-AAFFVNSNQTFDNIFRDSSEFNVDLDQWTNTRTGPLTALI-ANHLAWLR 365 (566)
T ss_dssp CHHHHHHTTCCCSEECTTTTCSBBCCEEEC-CEEEESCSCSSGGGGTCHHHHHHHHHHHHHHSCSGGGCCS-CSEEEEEC
T ss_pred ChHHHhhcCCCceecCcchhhhhhcCccce-EEEEeCCCcccchhhcChHHHHHHHHHHHhcCCCCcccCh-hhheeeec
Confidence 99999999999999999 999999999985 888776552 11 1 1123456789888999998765 36778887
Q ss_pred CCCC-------------CCCCchhhhhhhcccccchhhhhHhhhcccchHHHHHHhhcCCCCCeEEEEEeecccCcceEE
Q psy14407 306 TLQN-------------TARPDLEIHLLYFQQNDIRNMCKIKRAYDFNDEVQTAYVNLNKRTDMGVISMSLVNPKSCGKV 372 (522)
Q Consensus 306 ~~~~-------------~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~s~g~v 372 (522)
.... ...|++++++.+... .. .+........+++...+++|.|||+|
T Consensus 366 ~~~~~~~~~~~~~~~~~~~~pd~~~~~~~~~~---------------~~-----~~~~~~~~~~~~~~~~l~~P~SrG~V 425 (566)
T 3fim_B 366 LPSNSSIFQTFPDPAAGPNSAHWETIFSNQWF---------------HP-----AIPRPDTGSFMSVTNALISPVARGDI 425 (566)
T ss_dssp CCTTCGGGGTSCCCSSSTTSCSEEEEEESSCC---------------CT-----TSCCCSSCCEEEEEEEESSCSCCBEE
T ss_pred cccchhhhhhhccccccCCCCCEEEEecccch---------------hh-----cccCCCCCCEEEEEEeecCCccceEE
Confidence 6421 134555543322111 00 00111123567788888999999999
Q ss_pred EecCCCCCCCceeecCCCCChHHHHHHHHHHHHHHHHhcChhHHhhcccccccCCccCCCCCCCCHHHHHHHHHhhCCCC
Q psy14407 373 TLKSADPLAPPCIDTGILSEPEDLATLIRGTDYITRLEQTEAIRLAGGTLMSLNLEACSQYPWRSTHSWTCYIRHLTTTT 452 (522)
Q Consensus 373 ~l~~~d~~~~p~i~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~ 452 (522)
+|+++||++.|.|+++|+.++.|++.+.++++.+++++++++++.+...+.. |++ ....+|++|++|+|....+.
T Consensus 426 ~L~s~dp~~~P~i~~~yl~~~~D~~~~~~~~~~~~~i~~~~~~~~~~~~~~~---P~~--~~~~sd~~~~~~ir~~~~t~ 500 (566)
T 3fim_B 426 KLATSNPFDKPLINPQYLSTEFDIFTMIQAVKSNLRFLSGQAWADFVIRPFD---PRL--RDPTDDAAIESYIRDNANTI 500 (566)
T ss_dssp ECSSSCTTSCCEEECCTTCSHHHHHHHHHHHHHHHHHHTSGGGTTTEEEESS---GGG--SCTTCHHHHHHHHHHHCEEC
T ss_pred EecCCCCCCCceeccccCCCccHHHHHHHHHHHHHHHHhCcccCCccccccC---CCc--ccccchHHHHHHHhhccccc
Confidence 9999999999999999999999999999999999999999888887654432 332 23579999999999999999
Q ss_pred CcccccccccCCCCCCcccCCCCceeCcCCceEecccCCCCCCCchhHHHHHHHHHHHHHHHhhh
Q psy14407 453 SNPVGTVMMGNADDPNAVVTPDLKVKGIKGLRVADISVLPNAIITQSDAISYMIGEKCADLVKTS 517 (522)
Q Consensus 453 ~H~~Gt~rMG~~~~~~~VVD~~~rv~g~~NL~V~DaSv~P~~~~~NPtlTi~Ala~r~Ad~i~~~ 517 (522)
+|++||||||++++..+|||++|||||++||||||+||||+.+++||++|+||||||+||+|+++
T Consensus 501 ~H~~GTc~Mg~~~~~~~VVD~~lrV~Gv~~LrVvDaSv~P~~~~~n~~~~~~~iaekaAd~I~~~ 565 (566)
T 3fim_B 501 FHPVGTASMSPRGASWGVVDPDLKVKGVDGLRIVDGSILPFAPNAHTQGPIYLVGKQGADLIKAD 565 (566)
T ss_dssp SCCBCTTCBCCTTCSSCSBCTTCBBTTCBSEEECSGGGCCSCCSSCTHHHHHHHHHHHHHHHHHT
T ss_pred ccccCccccCCcccCCccCCCCCeEccCCCcEEcccccCCCCCCcCcHHHHHHHHHHHHHHHhhc
Confidence 99999999998865449999999999999999999999999999999999999999999999875
|
| >3qvp_A Glucose oxidase; oxidoreductase; HET: NAG BMA MAN FAD; 1.20A {Aspergillus niger} PDB: 1gal_A* 1cf3_A* 3qvr_A* | Back alignment and structure |
|---|
| >3q9t_A Choline dehydrogenase and related flavoproteins; glucose-methanol-choline oxidoreductase family, formate OXID formyl-FAD, oxidoreductase; HET: FAY; 2.24A {Aspergillus oryzae} | Back alignment and structure |
|---|
| >1gpe_A Protein (glucose oxidase); oxidoreductase(flavoprotein); HET: NAG BMA MAN FAD; 1.80A {Penicillium amagasakiense} SCOP: c.3.1.2 d.16.1.1 | Back alignment and structure |
|---|
| >2jbv_A Choline oxidase; alcohol oxidation, flavoenyzme oxidase, covalently linked FAD, C4A-adduct, flavoprotein, oxidoreductase; HET: FAO; 1.86A {Arthrobacter globiformis} PDB: 3nne_A* 3ljp_A* | Back alignment and structure |
|---|
| >3t37_A Probable dehydrogenase; BET alpha beta fold, ADP binding, oxidoreductase; HET: FAD; 2.19A {Mesorhizobium loti} | Back alignment and structure |
|---|
| >1ju2_A HydroxynitrIle lyase; flavin, GMC oxidoreductase, almond, cyanogenesis; HET: NAG NDG FUC BMA MAN FAD; 1.47A {Prunus dulcis} SCOP: c.3.1.2 d.16.1.1 PDB: 3gdp_A* 3gdn_A* | Back alignment and structure |
|---|
| >1kdg_A CDH, cellobiose dehydrogenase; GMC oxidoreductase, PHBH fold, alpha/beta structure, rossman 6-hydroxylated FAD, oxidoreductase; HET: NAG MAN 6FA EMT; 1.50A {Phanerochaete chrysosporium} SCOP: c.3.1.2 d.16.1.1 PDB: 1naa_A* | Back alignment and structure |
|---|
| >1n4w_A CHOD, cholesterol oxidase; flavoenzyme, steroid metabolism, oxidoreductase, atomic RESO; HET: FAD; 0.92A {Streptomyces SP} SCOP: c.3.1.2 d.16.1.1 PDB: 1b4v_A* 1n1p_A* 1n4u_A* 1n4v_A* 1mxt_A* 2gew_A* 1b8s_A* 3gyi_A* 1cc2_A* 3gyj_A* 1ijh_A* 1cbo_A* 3b3r_A* 3b6d_A* 3cnj_A* | Back alignment and structure |
|---|
| >1coy_A Cholesterol oxidase; oxidoreductase(oxygen receptor); HET: AND FAD; 1.80A {Brevibacterium sterolicum} SCOP: c.3.1.2 d.16.1.1 PDB: 3cox_A* | Back alignment and structure |
|---|
| >3pl8_A Pyranose 2-oxidase; substrate complex, H167A mutant, homotetramer, GMC oxidoredu PHBH fold, rossmann domain, oxidoreductase; HET: FAD MES G3F; 1.35A {Trametes ochracea} PDB: 2igo_A* 3lsm_A* 2ign_A* 3k4c_A* 1tt0_A* 2igk_A* 3k4b_A* 3lsk_A* 3bg6_A* 3lsh_A* 3lsi_A* 2igm_A* 3k4j_A* 3k4m_A* 3bg7_A* 3k4k_A* 3k4l_A* 3bly_A* 1tzl_A* 3fdy_A* ... | Back alignment and structure |
|---|
| >4at0_A 3-ketosteroid-delta4-5alpha-dehydrogenase; oxidoreductase, dehydogenase, steroid catabolism; HET: FAD; 1.60A {Rhodococcus jostii} PDB: 4at2_A* | Back alignment and structure |
|---|
| >1qo8_A Flavocytochrome C3 fumarate reductase; oxidoreductase; HET: HEM FAD; 2.15A {Shewanella frigidimarina} SCOP: a.138.1.3 c.3.1.4 d.168.1.1 | Back alignment and structure |
|---|
| >1y0p_A Fumarate reductase flavoprotein subunit; flavocytochrome, mesaconate, oxidoreductase; HET: HEM FAD; 1.50A {Shewanella frigidimarina} SCOP: a.138.1.3 c.3.1.4 d.168.1.1 PDB: 1qjd_A* 2b7s_A* 1jry_A* 2b7r_A* 1ksu_A* 1jrz_A* 1jrx_A* 1m64_A* 1p2h_A* 1p2e_A* 1kss_A* 1e39_A* 1q9i_A* 1lj1_A* | Back alignment and structure |
|---|
| >1d4d_A Flavocytochrome C fumarate reductase; oxidoreductase; HET: HEM FAD; 2.50A {Shewanella oneidensis} SCOP: a.138.1.3 c.3.1.4 d.168.1.1 PDB: 1d4e_A* 1d4c_A* | Back alignment and structure |
|---|
| >3da1_A Glycerol-3-phosphate dehydrogenase; NESG BHR167 Q9KDW6 X-RAY, structural genomics, PSI-2, protein structure initiative; HET: FAD; 2.70A {Bacillus halodurans} | Back alignment and structure |
|---|
| >2h88_A Succinate dehydrogenase flavoprotein subunit; complex II, membrane protein, heme protein, iron sulfur PROT cytochrome B, oxidoreductase; HET: FAD BHG HEM UNL; 1.74A {Gallus gallus} PDB: 1yq4_A* 1yq3_A* 2fbw_A* 2h89_A* 2wqy_A* 1zoy_A* 1zp0_A* 3abv_A* 3ae1_A* 3ae2_A* 3ae3_A* 3ae4_A* 3ae5_A* 3ae6_A* 3ae7_A* 3ae8_A* 3ae9_A* 3aea_A* 3aeb_A* 3aec_A* ... | Back alignment and structure |
|---|
| >2wdq_A Succinate dehydrogenase flavoprotein subunit; succinate dehydrogenase activity, cell inner membrane, trica acid cycle; HET: FAD HEM CBE; 2.40A {Escherichia coli} PDB: 1nen_A* 2acz_A* 1nek_A* 2wdr_A* 2wdv_A* 2wp9_A* 2ws3_A* 2wu2_A* 2wu5_A* | Back alignment and structure |
|---|
| >2rgh_A Alpha-glycerophosphate oxidase; flavoprotein oxidase, oxidoreductase; HET: FAD; 2.30A {Streptococcus SP} PDB: 2rgo_A* | Back alignment and structure |
|---|
| >1kf6_A Fumarate reductase flavoprotein; respiration, fumarate reductace, succinate dehydrogenase, CO quinol, quinone, oxidoreductase; HET: FAD HQO CE1 1PE; 2.70A {Escherichia coli} SCOP: a.7.3.1 c.3.1.4 d.168.1.1 PDB: 1kfy_A* 1l0v_A* 2b76_A* 3cir_A* 3p4p_A* 3p4q_A* 3p4r_A* 3p4s_A* | Back alignment and structure |
|---|
| >2bs2_A Quinol-fumarate reductase flavoprotein subunit A; 2Fe-2S, 3Fe-4S, 4Fe-4S, citric acid cycle, dihaem cytochrome B; HET: FAD HEM LMT; 1.78A {Wolinella succinogenes} SCOP: a.7.3.1 c.3.1.4 d.168.1.1 PDB: 2bs3_A* 1e7p_A* 2bs4_A* 1qlb_A* | Back alignment and structure |
|---|
| >1chu_A Protein (L-aspartate oxidase); flavoenzyme, NAD biosynthesis, FAD, oxidoreductase; 2.20A {Escherichia coli} SCOP: a.7.3.1 c.3.1.4 d.168.1.1 PDB: 1knr_A* 1knp_A* | Back alignment and structure |
|---|
| >3dme_A Conserved exported protein; structural genomics, PSI-2, PROT structure initiative, northeast structural genomics consort NESG; HET: FAD TLA; 1.70A {Bordetella pertussis} | Back alignment and structure |
|---|
| >4dgk_A Phytoene dehydrogenase; the FAD/NAD(P)-binding rossmann fold, oxidoreductase; 2.35A {Pantoea ananatis} | Back alignment and structure |
|---|
| >3gyx_A Adenylylsulfate reductase; oxidoreductase; HET: FAD; 3.20A {Desulfovibrio gigas} | Back alignment and structure |
|---|
| >1jnr_A Adenylylsulfate reductase; oxidoreductase; HET: FAD; 1.60A {Archaeoglobus fulgidus dsm 4304} SCOP: a.7.3.1 c.3.1.4 d.168.1.1 PDB: 1jnz_A* 2fjb_A* 2fja_A* 2fjd_A* 2fje_A* | Back alignment and structure |
|---|
| >3e1t_A Halogenase; flavoprotein; HET: FAD; 2.05A {Chondromyces crocatus} | Back alignment and structure |
|---|
| >3dje_A Fructosyl amine: oxygen oxidoreductase; fructosyl-amino acid, amadoriase, deglycation, fructosamine oxidase; HET: MSE FAD FSA EPE; 1.60A {Aspergillus fumigatus} PDB: 3djd_A* | Back alignment and structure |
|---|
| >1rp0_A ARA6, thiazole biosynthetic enzyme; protein ligand complex, biosynthetic protein; HET: AHZ HTO; 1.60A {Arabidopsis thaliana} SCOP: c.3.1.6 | Back alignment and structure |
|---|
| >1y56_B Sarcosine oxidase; dehydrogenase, protein-protein complex, oxidoreductase; HET: FAD FMN ATP CXS; 2.86A {Pyrococcus horikoshii} | Back alignment and structure |
|---|
| >3ka7_A Oxidoreductase; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; HET: FAD; 1.80A {Methanosarcina mazei} | Back alignment and structure |
|---|
| >3atr_A Conserved archaeal protein; saturating double bonds, archaeal membrane precursor, like 2 geranylgeranylglyceryl phosphate; HET: FDA; 1.80A {Sulfolobus acidocaldarius} PDB: 3atq_A* | Back alignment and structure |
|---|
| >2i0z_A NAD(FAD)-utilizing dehydrogenases; structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; HET: FAD; 1.84A {Bacillus cereus} SCOP: c.3.1.8 e.74.1.1 | Back alignment and structure |
|---|
| >2qcu_A Aerobic glycerol-3-phosphate dehydrogenase; glycerol-3-phoshate dehydrogenase, oxidoreductase; HET: BOG FAD TAM; 1.75A {Escherichia coli} PDB: 2r45_A* 2r46_A* 2r4e_A* 2r4j_A* | Back alignment and structure |
|---|
| >2gag_B Heterotetrameric sarcosine oxidase beta-subunit; flavoenzyme, electron transfer, folate-ME enzyme, oxidoreductase; HET: NAD FAD FMN; 1.85A {Stenotrophomonas maltophilia} PDB: 2gah_B* 1x31_B* 1vrq_B* 3ad7_B* 3ad8_B* 3ad9_B* 3ada_B* | Back alignment and structure |
|---|
| >3f8d_A Thioredoxin reductase (TRXB-3); redox protein, nucleotide binding, FAD, flavoprotein, oxidoreductase; HET: FAD; 1.40A {Sulfolobus solfataricus} PDB: 3f8p_A* 3f8r_A* | Back alignment and structure |
|---|
| >3axb_A Putative oxidoreductase; dinucleotide-binding fold; HET: FAD; 1.92A {Aeropyrum pernix} PDB: 3vqr_A* | Back alignment and structure |
|---|
| >3nyc_A D-arginine dehydrogenase; FAD, imino-arginine, oxidoreductas; HET: FAD IAR; 1.06A {Pseudomonas aeruginosa} PDB: 3nye_A* 3nyf_A* 3sm8_A* | Back alignment and structure |
|---|
| >3cty_A Thioredoxin reductase; FAD, oxidoreductase, flavin, flavoprotein; HET: FAD; 2.35A {Thermoplasma acidophilum} | Back alignment and structure |
|---|
| >3r9u_A Thioredoxin reductase; structural genomics, center for structural genomics of infec diseases, csgid, thioredoxin-disulfide reductase, FAD; HET: FAD; 2.36A {Campylobacter jejuni} | Back alignment and structure |
|---|
| >1fl2_A Alkyl hydroperoxide reductase subunit F; reactive oxygen, FAD, disulphi oxidoreductase, oxidoreductase; HET: FAD; 1.90A {Escherichia coli} SCOP: c.3.1.5 c.3.1.5 | Back alignment and structure |
|---|
| >3itj_A Thioredoxin reductase 1; disulfide B flavoprotein, NADP, oxidoreductase, phosphoprotein, redox-A center; HET: FAD CIT; 2.40A {Saccharomyces cerevisiae} PDB: 3d8x_A* | Back alignment and structure |
|---|
| >3lxd_A FAD-dependent pyridine nucleotide-disulphide oxidoreductase; glutathione reductase (GR)-like ONFR; HET: FAD; 2.50A {Novosphingobium aromaticivorans} | Back alignment and structure |
|---|
| >3fg2_P Putative rubredoxin reductase; ferredoxin reductase, RPA3782, F flavoprotein, oxidoreductase; HET: FAD; 2.20A {Rhodopseudomonas palustris} | Back alignment and structure |
|---|
| >3ab1_A Ferredoxin--NADP reductase; oxidoreductase, electron transport, FAD, flavoprotein; HET: FAD; 2.39A {Chlorobaculum tepidum} | Back alignment and structure |
|---|
| >1mo9_A ORF3; nucleotide binding motifs, nucleotide binding domain, oxidor; HET: FAD KPC; 1.65A {Xanthobacter autotrophicus} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1mok_A* 2c3c_A* 2c3d_A* 3q6j_A* | Back alignment and structure |
|---|
| >3i3l_A Alkylhalidase CMLS; flavin-dependent halogenase, chloramphenicol biosynthesis, halogenation reaction, structural genomics; HET: FAD; 2.20A {Streptomyces venezuelae} | Back alignment and structure |
|---|
| >1pj5_A N,N-dimethylglycine oxidase; channelling, FAD binding, folate binding, amine oxidase, oxidoreductase; HET: FAD; 1.61A {Arthrobacter globiformis} SCOP: b.44.2.1 c.3.1.2 d.16.1.5 d.250.1.1 PDB: 1pj6_A* 1pj7_A* 3gsi_A* | Back alignment and structure |
|---|
| >1trb_A Thioredoxin reductase; oxidoreductase(flavoenzyme); HET: FAD; 2.00A {Escherichia coli} SCOP: c.3.1.5 c.3.1.5 PDB: 1cl0_A* 1f6m_A* 1tdf_A* 1tde_A* | Back alignment and structure |
|---|
| >3nix_A Flavoprotein/dehydrogenase; structural genomics, PSI-2, NES protein structure initiative, northeast structural genomics consortium; HET: FAD; 2.60A {Cytophaga hutchinsonii} | Back alignment and structure |
|---|
| >2gmh_A Electron transfer flavoprotein-ubiquinone oxidoreductase; HET: BHG FAD UQ5; 2.50A {Sus scrofa} SCOP: c.3.1.2 d.16.1.8 d.58.1.6 PDB: 2gmj_A* | Back alignment and structure |
|---|
| >3nrn_A Uncharacterized protein PF1083; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative; HET: AMP; 2.10A {Pyrococcus furiosus} | Back alignment and structure |
|---|
| >3nlc_A Uncharacterized protein VP0956; FAD-binding protein, NESG, structural genomics, PSI-2, prote structure initiative; HET: FAD; 2.15A {Vibrio parahaemolyticus} | Back alignment and structure |
|---|
| >2oln_A NIKD protein; flavoprotein, rossmann fold, oxidoreductase; HET: FAD; 1.15A {Streptomyces tendae} PDB: 2olo_A* 3hzl_A* 2q6u_A* | Back alignment and structure |
|---|
Homologous Structure Domains
Structure Domains Detected by RPS-BLAST
Original result of RPS-BLAST against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
E-value |
| 522 | ||||
| d1cf3a1 | 385 | c.3.1.2 (A:3-324,A:521-583) Glucose oxidase {Asper | 5e-29 | |
| d1cf3a1 | 385 | c.3.1.2 (A:3-324,A:521-583) Glucose oxidase {Asper | 6e-11 | |
| d1gpea1 | 391 | c.3.1.2 (A:1-328,A:525-587) Glucose oxidase {Penic | 9e-29 | |
| d1gpea1 | 391 | c.3.1.2 (A:1-328,A:525-587) Glucose oxidase {Penic | 2e-08 | |
| d1ju2a1 | 351 | c.3.1.2 (A:1-293,A:464-521) Hydroxynitrile lyase { | 8e-17 | |
| d1kdga1 | 360 | c.3.1.2 (A:215-512,A:694-755) Flavoprotein domain | 1e-16 | |
| d1kdga1 | 360 | c.3.1.2 (A:215-512,A:694-755) Flavoprotein domain | 1e-07 | |
| d2f5va1 | 379 | c.3.1.2 (A:43-354,A:553-619) Pyranose 2-oxidase {W | 1e-16 | |
| d2f5va1 | 379 | c.3.1.2 (A:43-354,A:553-619) Pyranose 2-oxidase {W | 3e-08 | |
| d1n4wa1 | 367 | c.3.1.2 (A:9-318,A:451-507) Cholesterol oxidase of | 5e-15 | |
| d3coxa1 | 370 | c.3.1.2 (A:5-318,A:451-506) Cholesterol oxidase of | 9e-15 | |
| d1cf3a2 | 196 | d.16.1.1 (A:325-520) Glucose oxidase {Aspergillus | 4e-12 | |
| d1gpea2 | 196 | d.16.1.1 (A:329-524) Glucose oxidase {Penicillium | 1e-11 | |
| d1ju2a2 | 170 | d.16.1.1 (A:294-463) Hydroxynitrile lyase {Almond | 2e-09 | |
| d1kdga2 | 181 | d.16.1.1 (A:513-693) Flavoprotein domain of flavoc | 4e-08 |
| >d1cf3a1 c.3.1.2 (A:3-324,A:521-583) Glucose oxidase {Aspergillus niger [TaxId: 5061]} Length = 385 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD-linked reductases, N-terminal domain domain: Glucose oxidase species: Aspergillus niger [TaxId: 5061]
Score = 116 bits (290), Expect = 5e-29
Identities = 75/301 (24%), Positives = 117/301 (38%), Gaps = 24/301 (7%)
Query: 8 SEFDHAYLAEPSQFAGLGVRNARIKITAGKGLGGSSAVQNILYQRGTSYDYENFAKL-GY 66
S DHAY L N I +G GLGGS+ V + R +++ + G
Sbjct: 72 SSVDHAYETVE-----LATNNQTALIRSGNGLGGSTLVNGGTWTRPHKAQVDSWETVFGN 126
Query: 67 NGWGYDETLKYFVKSEDYRSVIYNESKAVHGTQGYLPVG--------LFKNKENNIIREI 118
GW +D Y +++E R+ + A H + + I +
Sbjct: 127 EGWNWDNVAAYSLQAERARAPNAKQIAAGHYFNASCHGVNGTVHAGPRDTGDDYSPIVKA 186
Query: 119 FETSAQELGYPCPKDMNDRYVDVGFAELPGMTRYGLRFSAADAYLTPIAGKRTNLYVLKR 178
++ ++ G P KD + +R AA +L P +R NL VL
Sbjct: 187 LMSAVEDRGVPTKKDFGCGDPHGVSMFPNTLHEDQVRSDAAREWLLPNY-QRPNLQVLTG 245
Query: 179 SKVTKVIINDQN---VATGVEYVNSKGETVRVTANKEVILTAGAIANAQLLLLSGIGPKA 235
V KV+++ A GVE+ KG T V A EV+L AG+ + +L SGIG K+
Sbjct: 246 QYVGKVLLSQNGTTPRAVGVEFGTHKGNTHNVYAKHEVLLAAGSAVSPTILEYSGIGMKS 305
Query: 236 HLDEVKIPVKQDLRVGENLKLNAQFTGPVMAFSAPLKRTVYSQEMVFKYLVNRIGPLSNA 295
L+ + I DL VG + + G V VY + + + + I P +
Sbjct: 306 ILEPLGIDTVVDLPVGLCSMMPKEMGGVVDNA-----ARVYGVQGL-RVIDGSIPPTQMS 359
Query: 296 G 296
Sbjct: 360 S 360
|
| >d1cf3a1 c.3.1.2 (A:3-324,A:521-583) Glucose oxidase {Aspergillus niger [TaxId: 5061]} Length = 385 | Back information, alignment and structure |
|---|
| >d1gpea1 c.3.1.2 (A:1-328,A:525-587) Glucose oxidase {Penicillium amagasakiense [TaxId: 63559]} Length = 391 | Back information, alignment and structure |
|---|
| >d1gpea1 c.3.1.2 (A:1-328,A:525-587) Glucose oxidase {Penicillium amagasakiense [TaxId: 63559]} Length = 391 | Back information, alignment and structure |
|---|
| >d1ju2a1 c.3.1.2 (A:1-293,A:464-521) Hydroxynitrile lyase {Almond (Prunus dulcis) [TaxId: 3755]} Length = 351 | Back information, alignment and structure |
|---|
| >d1kdga1 c.3.1.2 (A:215-512,A:694-755) Flavoprotein domain of flavocytochrome cellobiose dehydrogenase (CDH), FAD-binding domain {Fungus (Phanerochaete chrysosporium) [TaxId: 5306]} Length = 360 | Back information, alignment and structure |
|---|
| >d1kdga1 c.3.1.2 (A:215-512,A:694-755) Flavoprotein domain of flavocytochrome cellobiose dehydrogenase (CDH), FAD-binding domain {Fungus (Phanerochaete chrysosporium) [TaxId: 5306]} Length = 360 | Back information, alignment and structure |
|---|
| >d2f5va1 c.3.1.2 (A:43-354,A:553-619) Pyranose 2-oxidase {White-rot fungus (Peniophora sp. SG) [TaxId: 204723]} Length = 379 | Back information, alignment and structure |
|---|
| >d2f5va1 c.3.1.2 (A:43-354,A:553-619) Pyranose 2-oxidase {White-rot fungus (Peniophora sp. SG) [TaxId: 204723]} Length = 379 | Back information, alignment and structure |
|---|
| >d1n4wa1 c.3.1.2 (A:9-318,A:451-507) Cholesterol oxidase of GMC family {Streptomyces sp. [TaxId: 1931]} Length = 367 | Back information, alignment and structure |
|---|
| >d3coxa1 c.3.1.2 (A:5-318,A:451-506) Cholesterol oxidase of GMC family {Brevibacterium sterolicum [TaxId: 1702]} Length = 370 | Back information, alignment and structure |
|---|
| >d1cf3a2 d.16.1.1 (A:325-520) Glucose oxidase {Aspergillus niger [TaxId: 5061]} Length = 196 | Back information, alignment and structure |
|---|
| >d1gpea2 d.16.1.1 (A:329-524) Glucose oxidase {Penicillium amagasakiense [TaxId: 63559]} Length = 196 | Back information, alignment and structure |
|---|
| >d1ju2a2 d.16.1.1 (A:294-463) Hydroxynitrile lyase {Almond (Prunus dulcis) [TaxId: 3755]} Length = 170 | Back information, alignment and structure |
|---|
| >d1kdga2 d.16.1.1 (A:513-693) Flavoprotein domain of flavocytochrome cellobiose dehydrogenase (CDH), substrate-binding domain {Fungus (Phanerochaete chrysosporium) [TaxId: 5306]} Length = 181 | Back information, alignment and structure |
|---|
Homologous Domains Detected by HHsearch
Original result of HHsearch against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 522 | |||
| d1cf3a1 | 385 | Glucose oxidase {Aspergillus niger [TaxId: 5061]} | 100.0 | |
| d1gpea1 | 391 | Glucose oxidase {Penicillium amagasakiense [TaxId: | 100.0 | |
| d1kdga1 | 360 | Flavoprotein domain of flavocytochrome cellobiose | 100.0 | |
| d1ju2a1 | 351 | Hydroxynitrile lyase {Almond (Prunus dulcis) [TaxI | 100.0 | |
| d3coxa1 | 370 | Cholesterol oxidase of GMC family {Brevibacterium | 99.98 | |
| d1n4wa1 | 367 | Cholesterol oxidase of GMC family {Streptomyces sp | 99.97 | |
| d2f5va1 | 379 | Pyranose 2-oxidase {White-rot fungus (Peniophora s | 99.97 | |
| d1kdga2 | 181 | Flavoprotein domain of flavocytochrome cellobiose | 99.64 | |
| d1ju2a2 | 170 | Hydroxynitrile lyase {Almond (Prunus dulcis) [TaxI | 99.63 | |
| d1gpea2 | 196 | Glucose oxidase {Penicillium amagasakiense [TaxId: | 99.53 | |
| d1cf3a2 | 196 | Glucose oxidase {Aspergillus niger [TaxId: 5061]} | 99.51 | |
| d1y0pa2 | 308 | Flavocytochrome c3 (respiratory fumarate reductase | 97.76 | |
| d2f5va2 | 198 | Pyranose 2-oxidase {White-rot fungus (Peniophora s | 97.67 | |
| d1d4ca2 | 322 | Flavocytochrome c3 (respiratory fumarate reductase | 97.47 | |
| d1kf6a2 | 311 | Fumarate reductase {Escherichia coli [TaxId: 562]} | 97.29 | |
| d1qo8a2 | 317 | Flavocytochrome c3 (respiratory fumarate reductase | 97.29 | |
| d2ivda1 | 347 | Protoporphyrinogen oxidase {Myxococcus xanthus [Ta | 95.43 | |
| d1pj5a2 | 305 | N,N-dimethylglycine oxidase {Arthrobacter globifor | 95.35 | |
| d2bs2a2 | 336 | Fumarate reductase {Wolinella succinogenes [TaxId: | 95.24 | |
| d1mo9a2 | 121 | NADH-dependent 2-ketopropyl coenzyme M oxidoreduct | 93.57 | |
| d1ryia1 | 276 | Glycine oxidase ThiO {Bacillus sp. [TaxId: 1409]} | 93.5 | |
| d1chua2 | 305 | L-aspartate oxidase {Escherichia coli [TaxId: 562] | 93.27 | |
| d1fl2a2 | 126 | Alkyl hydroperoxide reductase subunit F (AhpF), C- | 93.09 | |
| d2gf3a1 | 281 | Sarcosine oxidase {Bacillus sp., strain b0618 [Tax | 93.07 | |
| d2i0za1 | 251 | Flavoprotein BC4706 {Bacillus cereus [TaxId: 1396] | 92.59 | |
| d3lada2 | 119 | Dihydrolipoamide dehydrogenase {Azotobacter vinela | 92.15 | |
| d1dxla2 | 123 | Dihydrolipoamide dehydrogenase {Garden pea (Pisum | 90.71 | |
| d1v59a2 | 122 | Dihydrolipoamide dehydrogenase {Baker's yeast (Sac | 89.45 | |
| d1vdca2 | 130 | Thioredoxin reductase {Mouse-ear cress (Arabidopsi | 89.11 | |
| d2cula1 | 230 | GidA-related protein TTHA1897 {Thermus thermophilu | 89.02 | |
| d1neka2 | 330 | Succinate dehydogenase {Escherichia coli [TaxId: 5 | 88.91 | |
| d2gqfa1 | 253 | Hypothetical protein HI0933 {Haemophilus influenza | 87.04 | |
| d1jnra2 | 356 | Adenylylsulfate reductase A subunit {Archaeon Arch | 86.37 | |
| d1ebda2 | 117 | Dihydrolipoamide dehydrogenase {Bacillus stearothe | 85.96 | |
| d1q1ra2 | 133 | Putidaredoxin reductase {Pseudomonas putida [TaxId | 85.69 | |
| d1ojta2 | 125 | Dihydrolipoamide dehydrogenase {Neisseria meningit | 85.11 | |
| d2bcgg1 | 297 | Guanine nucleotide dissociation inhibitor, GDI {Ba | 84.66 | |
| d1ps9a2 | 162 | 2,4-dienoyl-CoA reductase, C-terminal domain {Esch | 81.38 | |
| d1d5ta1 | 336 | Guanine nucleotide dissociation inhibitor, GDI {Co | 80.44 |
| >d1cf3a1 c.3.1.2 (A:3-324,A:521-583) Glucose oxidase {Aspergillus niger [TaxId: 5061]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD-linked reductases, N-terminal domain domain: Glucose oxidase species: Aspergillus niger [TaxId: 5061]
Probab=100.00 E-value=3.4e-51 Score=417.69 Aligned_cols=240 Identities=29% Similarity=0.419 Sum_probs=203.4
Q ss_pred cCCCCCcccceeecccccCcccCCCCceeeeecCcccchhhHhhcceeecCChhhHHHHHHh-CCCCCCchhhHHHHHHh
Q psy14407 3 SVLSLSEFDHAYLAEPSQFAGLGVRNARIKITAGKGLGGSSAVQNILYQRGTSYDYENFAKL-GYNGWGYDETLKYFVKS 81 (522)
Q Consensus 3 ~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~g~~vGGsS~~n~~~~~r~~~~df~~w~~~-g~~~w~~~~l~pyy~~~ 81 (522)
..++++.+||.|.++++. ..++.+.+.+|++|||||.||+|.|+|+.+.||+.|.+. ++++|+|++|+|||+|+
T Consensus 67 ~~~~~~~~dw~~~t~~~~-----~~~r~~~~~~G~~lGGsS~in~~~~~R~~~~d~d~w~~~~~~~gw~~~~l~Pyf~k~ 141 (385)
T d1cf3a1 67 GDIFGSSVDHAYETVELA-----TNNQTALIRSGNGLGGSTLVNGGTWTRPHKAQVDSWETVFGNEGWNWDNVAAYSLQA 141 (385)
T ss_dssp TTTTTSTTBCCEECCCCT-----TTSCCCEECCBCSTTGGGGTSCCBCCCCCHHHHHHHHHTTCCTTCSHHHHHHHHHHH
T ss_pred hhhcCCCCCcCccccCcC-----CCCceeeecccccccccceeeeeeeeccChhhhcccccccCCCcCchhhhHHHHHHH
Confidence 356688999999998764 688999999999999999999999999999999999986 78899999999999999
Q ss_pred ccCCCCCCC-------CCCCCcCCCCcEeeecCCCC-CCchHHHHHHHHHHHcCCCCCCCCCCCCcccceeeeccccc-C
Q psy14407 82 EDYRSVIYN-------ESKAVHGTQGYLPVGLFKNK-ENNIIREIFETSAQELGYPCPKDMNDRYVDVGFAELPGMTR-Y 152 (522)
Q Consensus 82 e~~~~~~~~-------~~~~~~g~~gp~~v~~~~~~-~~~~~~~~~~~a~~~~G~~~~~~~n~~~~~~G~~~~~~~~~-~ 152 (522)
|++.++... .+...|+..+|+.+.+.... ...|+.+.|.++++++|++...++|... ..+++.|.+++. .
T Consensus 142 E~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~p~~~~~~~a~~~~G~~~~~d~n~~~-~~~~~~~~~~~~~~ 220 (385)
T d1cf3a1 142 ERARAPNAKQIAAGHYFNASCHGVNGTVHAGPRDTGDDYSPIVKALMSAVEDRGVPTKKDFGCGD-PHGVSMFPNTLHED 220 (385)
T ss_dssp EEECCCCHHHHHHTCCCCGGGSCSSSSEEEBCCCCSSCBCTHHHHHHHHHHTTTCCBCCCTTSSC-CCEEECCCBSBCTT
T ss_pred HhhcCCCcccccccccccccccCCcccccccccccccccCHHHHHHHHHHHHcCCCCcCCccccc-cccccccccccccc
Confidence 999876532 24567888899988754322 2268899999999999999888888877 777766665543 4
Q ss_pred CeecchhhhhcccccCCCCCeEEEcCcEEEEEEec-CC--CeEEEEEEEecCCeEEEEEeCcEEEEcCcchhhhHHHHHh
Q psy14407 153 GLRFSAADAYLTPIAGKRTNLYVLKRSKVTKVIIN-DQ--NVATGVEYVNSKGETVRVTANKEVILTAGAIANAQLLLLS 229 (522)
Q Consensus 153 g~R~s~~~~~l~~~~~~~~n~~v~~~~~V~~I~~~-~~--~~a~gV~~~~~~g~~~~v~A~k~VILaaGai~Tp~LLl~S 229 (522)
..|.++...|+.++. +++|++|+++++|+||+++ ++ .||+||++.+.+|++++++|+|+||||||||+||+|||+|
T Consensus 221 ~~~~~s~~~~~~p~~-~~~nl~i~t~~~V~rI~~~~~~~~~ra~GV~~~~~~g~~~~v~A~keVILsAGAi~SP~LLl~S 299 (385)
T d1cf3a1 221 QVRSDAAREWLLPNY-QRPNLQVLTGQYVGKVLLSQNGTTPRAVGVEFGTHKGNTHNVYAKHEVLLAAGSAVSPTILEYS 299 (385)
T ss_dssp CBBCCHHHHHTGGGT-TCTTEEEEESCEEEEEEEECSSSSCEEEEEEEEEETTEEEEEEEEEEEEECSCTTTHHHHHHHT
T ss_pred ccchhhhhhhcCchh-cCCcccccCCceEEEEEEcCCCceeEEEEEEEEcCCCCEEEEEeCCEEEEcCchhhCHHHHHhc
Confidence 456667778998988 8999999999999999998 22 3899999987789999999988999999999999999999
Q ss_pred CCCChhhhhhCCCCceeecc
Q psy14407 230 GIGPKAHLDEVKIPVKQDLR 249 (522)
Q Consensus 230 Gig~~~~l~~~gi~~~~~~p 249 (522)
||||+++|+++||+++.|+|
T Consensus 300 GIGp~~~L~~~gI~~~~dlP 319 (385)
T d1cf3a1 300 GIGMKSILEPLGIDTVVDLP 319 (385)
T ss_dssp TBSCHHHHGGGTCCCSBCCC
T ss_pred CCCcHHHHHHCCCCeEEECC
Confidence 99999999888876554433
|
| >d1gpea1 c.3.1.2 (A:1-328,A:525-587) Glucose oxidase {Penicillium amagasakiense [TaxId: 63559]} | Back information, alignment and structure |
|---|
| >d1kdga1 c.3.1.2 (A:215-512,A:694-755) Flavoprotein domain of flavocytochrome cellobiose dehydrogenase (CDH), FAD-binding domain {Fungus (Phanerochaete chrysosporium) [TaxId: 5306]} | Back information, alignment and structure |
|---|
| >d1ju2a1 c.3.1.2 (A:1-293,A:464-521) Hydroxynitrile lyase {Almond (Prunus dulcis) [TaxId: 3755]} | Back information, alignment and structure |
|---|
| >d3coxa1 c.3.1.2 (A:5-318,A:451-506) Cholesterol oxidase of GMC family {Brevibacterium sterolicum [TaxId: 1702]} | Back information, alignment and structure |
|---|
| >d1n4wa1 c.3.1.2 (A:9-318,A:451-507) Cholesterol oxidase of GMC family {Streptomyces sp. [TaxId: 1931]} | Back information, alignment and structure |
|---|
| >d2f5va1 c.3.1.2 (A:43-354,A:553-619) Pyranose 2-oxidase {White-rot fungus (Peniophora sp. SG) [TaxId: 204723]} | Back information, alignment and structure |
|---|
| >d1kdga2 d.16.1.1 (A:513-693) Flavoprotein domain of flavocytochrome cellobiose dehydrogenase (CDH), substrate-binding domain {Fungus (Phanerochaete chrysosporium) [TaxId: 5306]} | Back information, alignment and structure |
|---|
| >d1ju2a2 d.16.1.1 (A:294-463) Hydroxynitrile lyase {Almond (Prunus dulcis) [TaxId: 3755]} | Back information, alignment and structure |
|---|
| >d1gpea2 d.16.1.1 (A:329-524) Glucose oxidase {Penicillium amagasakiense [TaxId: 63559]} | Back information, alignment and structure |
|---|
| >d1cf3a2 d.16.1.1 (A:325-520) Glucose oxidase {Aspergillus niger [TaxId: 5061]} | Back information, alignment and structure |
|---|
| >d1y0pa2 c.3.1.4 (A:111-361,A:512-568) Flavocytochrome c3 (respiratory fumarate reductase) {Shewanella frigidimarina [TaxId: 56812]} | Back information, alignment and structure |
|---|
| >d2f5va2 d.16.1.1 (A:355-552) Pyranose 2-oxidase {White-rot fungus (Peniophora sp. SG) [TaxId: 204723]} | Back information, alignment and structure |
|---|
| >d1d4ca2 c.3.1.4 (A:103-359,A:506-570) Flavocytochrome c3 (respiratory fumarate reductase) {Shewanella putrefaciens [TaxId: 24]} | Back information, alignment and structure |
|---|
| >d1kf6a2 c.3.1.4 (A:0-225,A:358-442) Fumarate reductase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
| >d1qo8a2 c.3.1.4 (A:103-359,A:506-565) Flavocytochrome c3 (respiratory fumarate reductase) {Shewanella frigidimarina [TaxId: 56812]} | Back information, alignment and structure |
|---|
| >d2ivda1 c.3.1.2 (A:10-306,A:415-464) Protoporphyrinogen oxidase {Myxococcus xanthus [TaxId: 34]} | Back information, alignment and structure |
|---|
| >d1pj5a2 c.3.1.2 (A:4-219,A:339-427) N,N-dimethylglycine oxidase {Arthrobacter globiformis [TaxId: 1665]} | Back information, alignment and structure |
|---|
| >d2bs2a2 c.3.1.4 (A:1-250,A:372-457) Fumarate reductase {Wolinella succinogenes [TaxId: 844]} | Back information, alignment and structure |
|---|
| >d1mo9a2 c.3.1.5 (A:193-313) NADH-dependent 2-ketopropyl coenzyme M oxidoreductase/carboxylase {Xanthobacter sp., py2 [TaxId: 35809]} | Back information, alignment and structure |
|---|
| >d1ryia1 c.3.1.2 (A:1-218,A:307-364) Glycine oxidase ThiO {Bacillus sp. [TaxId: 1409]} | Back information, alignment and structure |
|---|
| >d1chua2 c.3.1.4 (A:2-237,A:354-422) L-aspartate oxidase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
| >d1fl2a2 c.3.1.5 (A:326-451) Alkyl hydroperoxide reductase subunit F (AhpF), C-terminal domains {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
| >d2gf3a1 c.3.1.2 (A:1-217,A:322-385) Sarcosine oxidase {Bacillus sp., strain b0618 [TaxId: 1409]} | Back information, alignment and structure |
|---|
| >d2i0za1 c.3.1.8 (A:1-192,A:362-420) Flavoprotein BC4706 {Bacillus cereus [TaxId: 1396]} | Back information, alignment and structure |
|---|
| >d3lada2 c.3.1.5 (A:159-277) Dihydrolipoamide dehydrogenase {Azotobacter vinelandii [TaxId: 354]} | Back information, alignment and structure |
|---|
| >d1dxla2 c.3.1.5 (A:153-275) Dihydrolipoamide dehydrogenase {Garden pea (Pisum sativum) [TaxId: 3888]} | Back information, alignment and structure |
|---|
| >d1v59a2 c.3.1.5 (A:161-282) Dihydrolipoamide dehydrogenase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
| >d1vdca2 c.3.1.5 (A:118-243) Thioredoxin reductase {Mouse-ear cress (Arabidopsis thaliana) [TaxId: 3702]} | Back information, alignment and structure |
|---|
| >d2cula1 c.3.1.7 (A:2-231) GidA-related protein TTHA1897 {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
| >d1neka2 c.3.1.4 (A:1-235,A:356-450) Succinate dehydogenase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
| >d2gqfa1 c.3.1.8 (A:1-194,A:343-401) Hypothetical protein HI0933 {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
| >d1jnra2 c.3.1.4 (A:2-256,A:402-502) Adenylylsulfate reductase A subunit {Archaeon Archaeoglobus fulgidus [TaxId: 2234]} | Back information, alignment and structure |
|---|
| >d1ebda2 c.3.1.5 (A:155-271) Dihydrolipoamide dehydrogenase {Bacillus stearothermophilus [TaxId: 1422]} | Back information, alignment and structure |
|---|
| >d1q1ra2 c.3.1.5 (A:115-247) Putidaredoxin reductase {Pseudomonas putida [TaxId: 303]} | Back information, alignment and structure |
|---|
| >d1ojta2 c.3.1.5 (A:276-400) Dihydrolipoamide dehydrogenase {Neisseria meningitidis [TaxId: 487]} | Back information, alignment and structure |
|---|
| >d2bcgg1 c.3.1.3 (G:5-301) Guanine nucleotide dissociation inhibitor, GDI {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
| >d1ps9a2 c.3.1.1 (A:466-627) 2,4-dienoyl-CoA reductase, C-terminal domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|