Psyllid ID: psy14408

---

Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-------540-------550-------560-------570-------580-------590-------600-------610-------620-------630-------640-------650-------660-------670-------680-------690-------700-------710-------720
Protein Sequence
MALLRQGKKFCLSIQSTESRFSFQSKFSVQPLEPQLTIQQKLALKSFQPKLLLQSKIFDIIPYSNTDDIYNPFSPINQYSPYSPYNTDSLFDNTHPESLLNPYNPESLLSPLNPRSVFYPSNPEVPSFDYNNPNSPFNPYNPSSVFNPKNIDSVFNPRNPDSPYYNQYQFLYSPLSPYNPRSLFSSQNPLSPLSPLNANSPYNPRNQISYYNIENPKSPYNIHNPESPLYSDSPYYYRNLPLYNPVETELIDQYSTSVYNNPDSPLSINSPHSVLNPYNLDSILNPFNVKSPLSPENPASPFNPYNPEPSIFDSHNIYSFFSPHNPYSPFNPYNIDSPFNSDNPDSPFRNYPQYSRYNPKNPESPFSPQNEDSIYNPENPNSPYNPFNENSLYHPGNPDSPYDWQRLEKERYNIYRSVIYPPDMTPYVKSGDCFDIIIVGASAAGCVLANRLSEVSSLKVLLIEAGGDTPIHSRIPGMSSVLSLSEFDHAYLAEPSQFAGLGVRNARIKITAGKGLGGSSAVQNILYQRGTSYDYENFAKLGYNGWGYDETLKYFVKSEDYRSVIYNESKAVHGTQGYLPVGLFKNKENNIIREIFETSAQELGYPCPKDMNDRYVDVGFAELPGMTRYGLRFSAADAYLTPIAGKRTNLYVLKRSKVTKVIINDQNVATGVEYVNSKGETVRVTANKEVILTAGAIANAQLLLLSGIGPKAHLDEVKIP
Secondary Structure (PSIPRED)
cHHHHcccEEEEEEEcccccEEEEcccccccccccHHHHEEEEEccccHHHHHHcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHcccccccccccccccccccccccEEEEcccHHHHHHHHccccccccEEEEEccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHccccccHHHHHHcccccccccccHHHHHHHccccccccccccccccccccccEEccccccccHHHHHHHHHHHHccccccccccccccccccccccccccccEEccccccccccccccccccEEEcccEEEEEEEccccEEEEEEEEEcccEEEEEEEccEEEEEcccHHHHHHHHHcccccHHHHHccccc
Secondary Structure Prediction (SSPRO)
ccHHHccccEEEEEEccccEEEEccccccccccHHHHHHHHHHHHHHHHHHHHHHHHEEEcccccccccccccccccccccccccccccccccccccHccccccHHHHcccccccccEcccccccccccccccccccccccccccccccccccccccccccccccccEEEEEcccccccccccccccccccccccccccccccccccEEEEEcccccccccccccccccccccccEEccccccccccHHHHccccccEccccccccccccccccccccccHHccccccccccccccccccccccccccccccccccEEEcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccEEEEcccccccccccccccccccEEEEEcccHHHHHHHHcccccccEEEEEEccccccccEccHHHHHHHccccccccEcccccccHHHcccccEcccccccEEcccHHHHHHHHEcccHHHHHHHHHcccccccHHHHHHHHHHHccccccccccccccccccccEEEEEcccccccHHHHHHHHHHHHccccccccccccccccccEEEEEEEcccccccHHHHHHHHHHHcccccEEEEEEEEEEEEEccccEEEEEEEEEEccEEEEEEEEEEEEEccccccHHHHHHHHcEccHHHHHHHccc
Coil and Loop (DISEMBL)
mallrqgkKFCLSIQstesrfsfqskfsvqplepqlTIQQKLALKsfqpklllqskifdiipysntddiynpfspinqyspyspyntdslfdnthpesllnpynpesllsplnprsvfypsnpevpsfdynnpnspfnpynpssvfnpknidsvfnprnpdspyynqyqflysplspynprslfssqnplsplsplnanspynprnqisyynienpkspynihnpesplysdspyyyrnlplynpvetelidqystsvynnpdsplsinsphsvlnpynldsilnpfnvksplspenpaspfnpynpepsifdshniysffsphnpyspfnpynidspfnsdnpdspfrnypqysrynpknpespfspqnedsiynpenpnspynpfnenslyhpgnpdspydwQRLEKERYNIyrsviyppdmtpyvksgdcfdIIIVGASAAGCVLANRLSEVSSLKVLLIEaggdtpihsripgmssvlslsefdhaylaepsqfaglgvrNARIKItagkglggssAVQNILYqrgtsydyenfaklgyngwgydetlkyfvksedyRSVIYNeskavhgtqgylpvglfknkenNIIREIFETSaqelgypcpkdmndryvdvgfaelpgmtryglrfsaadayltpiagkrtnlyvlkrsKVTKVIINDQNVATGVEYVNSKGETVRVTANKEVILTAGAIANAQLLLLsgigpkahldevkip
Flexible Loop (DISEMBL)
MALLRQGKKFCLSIQSTESRFSFQSKFSVQPLEPQLTIQQKLALKSFQPKLLLQSKIFDIIPYSNTDDIYNPFSPINQYSPYSPYNTDSLFDNTHPESLLNPYNPESLLSPLNPRSVFYPSNPEVPSFDYNNPNSPFNPYNPSSVFNPKNIDSVFNPRNPDSPYYNQYQFLYSPLSPYNPRSLFSSQNPLSPLSPLNANSPYNPRNQISYYNIENPKSPYNIHNPESPLYSDSPYYYRNLPLYNPVETELIDQYSTSVYNNPDSPLSINSPHSVLNPYNLDSILNPFNVKSPLSPENPASPFNPYNPEPSIFDSHNIYSFFSPHNPYSPFNPYNIDSPFNSDNPDSPFRNYPQYSRYNPKNPESPFSPQNEDSIYNPENPNSPYNPFNENSLYHPGNPDSPYDWQRLEKERYNIYRSVIYPPDMTPYVKSGDCFDIIIVGASAAGCVLANRLSEVSSLKVLLIEAggdtpihsrIPGMSSVLSLSEFDHAYLAEPSQFAGLGVRNARIKItagkglggssaVQNILYQRGTSYDYENFAKLGYNGWGYDETLKYFVKSEDYRSVIYNESkavhgtqgylpvgLFKNKENNIIREIFETSAQELGYPCPKDMNDRYVDVGFAELPGMTRYGLRFSAADAyltpiagkrtnlyvlkrskvtkviindqnvatgveyvnskgetvRVTANKEVILTAGAIANAQLLLLsgigpkahldevkip
Low Complexity Region (SEG)
MALLRQGKKFCLSIQSTESRFSFQSKFSVQPLEPQLTIQQKLALKSFQPKLLLQSKIFDIIPYSNTDDIYNPFSPINQYSPYSPYNTDSLFDNTHPESLLNPYNPESLLSPLNPRSVFYPSNPEVpsfdynnpnspfnpynpssvfnpKNIDSVFNPRNPDSPYYNQYQFLYSPLSPYNPRslfssqnplsplsplnanspynpRNQISYYNIENPKSPYNIHNPESPLYSDSpyyyrnlplynpVETELIDQYSTSVYNNPDSPLSINSPHSVLNPYNLDSILNPFNVKSPLSPENPASPFNPYNPEPSIFDSHNIYSFFSPHNPYSPFNPYNIDSPFNSDNPDSPFRNYPQYSRYNPKNPESPFSPQNEDSIynpenpnspynpfnensLYHPGNPDSPYDWQRLEKERYNIYRSVIYPPDMTPYVKSGDCFDIIIVGASAAGCVLANRLSEVSSLKVLLIEAGGDTPIHSRIPGMSSVLSLSEFDHAYLAEPSQFAGLGVRNARIKITAGKGLGGSSAVQNILYQRGTSYDYENFAKLGYNGWGYDETLKYFVKSEDYRSVIYNESKAVHGTQGYLPVGLFKNKENNIIREIFETSAQELGYPCPKDMNDRYVDVGFAELPGMTRYGLRFSAADAYLTPIAGKRTNLYVLKRSKVTKVIINDQNVATGVEYVNSKGETVRVTANKEVILTAGAIANAQLLLLSGIGPKAHLDEVKIP
Disordered region (IsUnstruct)
*********FCLS******************L*PQLTIQQKLALKSFQPKLLLQSKIFDIIPYSNTDDIYNPFSPINQYSPYSPYN*****************************************************************************YYNQYQFLYSPL**********************************YY*****************LYSDSPYYYRNLPLYNPVETELIDQYSTSVY***************LNPYNLDSILN**************************FDSHNIYSFFSPH*****************************************************************************YDWQRLEKERYNIYRSVIYPPDMTPYVKSGDCFDIIIVGASAAGCVLANRLSEVSSLKVLLIEAGGDTPIHSRIPGMSSVLSLSEFDHAYLAEPSQFAGLGVRNARIKITAGKGLGGSSAVQNILYQRGTSYDYENFAKLGYNGWGYDETLKYFVKSEDYRSVIYNESKAVHGTQGYLPVGLFKNKENNIIREIFETSAQELGYPCPKDMNDRYVDVGFAELPGMTRYGLRFSAADAYLTPIAGKRTNLYVLKRSKVTKVIINDQNVATGVEYVNSKGETVRVTANKEVILTAGAIANAQLLLLSGIGP**********
Disordered Region (DISOPRED)
********KFCLSIQSTESRFSFQSKFSVQPLEPQLTIQQKLALKSFQPKLLLQSKIFDIIPYSNTDDIYN***********************************************************NNPNSPFNPYNPSSVFNPKNID*******P**PYYNQY***************************************************YNIHNPESPLYSDSPYYYRNLPLYNPVETELIDQYSTSV****************LNPYNLDSILNPFNVKSPLSPENPASPFNPYNPE****************N****FNPYNIDSPFNSDNPDSPFRNYPQ*****************************PYNPFNENSLYHPGNPDSPYDWQRLEKERYNIYRSVIYPPDMTPYVKSGDCFDIIIVGASAAGCVLANRLSEVSSLKVLLIEAGGDTPIHSRIPGMSSVLSLSEFDHAYLAEPSQFAGLGVRNARIKITAGKGLGGSSAVQNILYQRGTSYDYENFAKLGYNGWGYDETLKYFVKSEDYRSVIYNESKAVHGTQGYLPVGLFKNKENNIIREIFETSAQELGYPCPKDMNDRYVDVGFAELPGMTRYGLRFSAADAYLTPIAGKRTNLYVLKRSKVTKVIINDQNVATGVEYVNSKGETVRVTANKEVILTAGAIANAQLLLLSGIGPKAHLDEVKIP
Disordered Region (DISEMBL)
MALLRQGKKFCLSIQSTESRFSFQSKFSVQPLEPQLTIQQKLALKSFQPKLLLQSKIFDIIPYSNTDDIYNPFSPINQYSPYSPYNTDSLFDNTHPESLLNPYNPESLLSPLNPRSVFYPSNPEVPSFDYNNPNSPFNPYNPSSVFNPKNIDSVFNPRNPDSPYYNQYQFLYSPLSPYNPRSLFSSQNPLSPLSPLNANSPYNPRNQISYYNIENPKSPYNIHNPESPLYSDSPYYYRNLPLYNPVETELIDQYSTSVYNNPDSPLSINSPHSVLNPYNLDSILNPFNVKSPLSPENPASPFNPYNPEPSIFDSHNIYSFFSPHNPYSPFNPYNIDSPFNSDNPDSPFRNYPQYSRYNPKNPESPFSPQNEDSIYNPENPNSPYNPFNENSLYHPGNPDSPYDWQRLEKERYNIYRSVIYPPDMTPYVKSGDCFDIIIVGASAAGCVLANRLSEVSSLKVLLIEAGGDTPIHSRIPGMSSVLSLSEFDHAYLAEPSQFAGLGVRNARIKITAGKGLGGSSAVQNILYQRGTSYDYENFAKLGYNGWGYDETLKYFVKSEDYRSVIYNESKAVHGTQGYLPVGLFKNKENNIIREIFETSAQELGYPCPKDMNDRYVDVGFAELPGMTRYGLRFSAADAYLTPIAGKRTNLYVLKRSKVTKVIINDQNVATGVEYVNSKGETVRVTANKEVILTAGAIANAQLLLLSGIGPKAHLDEVKIP
Disordered Region (DISPRO)
*ALLRQGKKFCLSIQSTESRFSFQSKFSVQPLEPQLTIQQKLALKSFQPKLLLQSKIFDIIPYSNTDDIYNPFSPINQYSPYSPYNTDSLFDNTHPESLLNPYNPESLLSPLNPRSVFYPSNPEVPSFDYNNPNSPFNPYNPSSVFNPKNIDSVFNPRNPDSPYYNQYQFLYSPLSPYNPRSLFSSQNPLSPLSPLNANSPYNPRNQISYYNIENPKSPYNIHNPESPLYSDSPYYYRNLPLYNPVETELIDQYSTSVYNNPDSPLSINSPHSVLNPYNLDSILNPFNVKSPLSPENPASPFNPYNPEPSIFDSHNIYSFFSPHNPYSPFNPYNIDSPFNSDNPDSPFRNYPQYSRYNPKNPESPFSPQNEDSIYNPENPNSPYNPFNENSLYHPGNPDSPYDWQRLEKERYNIYRSVIYPPDMTPYVKSGDCFDIIIVGASAAGCVLANRLSEVSSLKVLLIEAGGDTPIHSRIPGMSSVLSLSEFDHAYLAEPSQFAGLGVRNARIKITAGKGLGGSSAVQNILYQRGTSYDYENFAKLGYNGWGYDETLKYFVKSEDYRSVIYNESKAVHGTQGYLPVGLFKNKENNIIREIFETSAQELGYPCPKDMNDRYVDVGFAELPGMTRYGLRFSAADAYLTPIAGKRTNLYVLKRSKVTKVIINDQNVATGVEYVNSKGETVRVTANKEVILTAGAIANAQLLLLSGIGPKAHLDEVK**
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Signal Peptide (SignalP NN Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Coiled Coils (COILS)
MALLRQGKKFCLSIQSTESRFSFQSKFSVQPLEPQLTIQQKLALKSFQPKLLLQSKIFDIIPYSNTDDIYNPFSPINQYSPYSPYNTDSLFDNTHPESLLNPYNPESLLSPLNPRSVFYPSNPEVPSFDYNNPNSPFNPYNPSSVFNPKNIDSVFNPRNPDSPYYNQYQFLYSPLSPYNPRSLFSSQNPLSPLSPLNANSPYNPRNQISYYNIENPKSPYNIHNPESPLYSDSPYYYRNLPLYNPVETELIDQYSTSVYNNPDSPLSINSPHSVLNPYNLDSILNPFNVKSPLSPENPASPFNPYNPEPSIFDSHNIYSFFSPHNPYSPFNPYNIDSPFNSDNPDSPFRNYPQYSRYNPKNPESPFSPQNEDSIYNPENPNSPYNPFNENSLYHPGNPDSPYDWQRLEKERYNIYRSVIYPPDMTPYVKSGDCFDIIIVGASAAGCVLANRLSEVSSLKVLLIEAGGDTPIHSRIPGMSSVLSLSEFDHAYLAEPSQFAGLGVRNARIKITAGKGLGGSSAVQNILYQRGTSYDYENFAKLGYNGWGYDETLKYFVKSEDYRSVIYNESKAVHGTQGYLPVGLFKNKENNIIREIFETSAQELGYPCPKDMNDRYVDVGFAELPGMTRYGLRFSAADAYLTPIAGKRTNLYVLKRSKVTKVIINDQNVATGVEYVNSKGETVRVTANKEVILTAGAIANAQLLLLSGIGPKAHLDEVKIP
Positional Conservation
no confident homologs detected

---

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	720	2.2.26 [Sep-21-2011]
P18172	625	Glucose dehydrogenase [ac	no	N/A	0.381	0.44	0.390	2e-41
P18173	625	Glucose dehydrogenase [ac	no	N/A	0.387	0.446	0.385	1e-40
Q6LGH5	568	Choline dehydrogenase OS=	yes	N/A	0.370	0.470	0.379	3e-36
A7N2P9	569	Choline dehydrogenase OS=	yes	N/A	0.379	0.479	0.356	3e-35
Q47944	531	L-sorbose 1-dehydrogenase	yes	N/A	0.377	0.512	0.377	6e-35
Q6FDF9	553	Choline dehydrogenase OS=	yes	N/A	0.380	0.495	0.367	2e-34
Q1QXE1	560	Choline dehydrogenase OS=	yes	N/A	0.379	0.487	0.380	1e-33
Q1IG70	565	Choline dehydrogenase OS=	no	N/A	0.381	0.486	0.374	2e-33
Q8D3K2	560	Choline dehydrogenase OS=	yes	N/A	0.379	0.487	0.363	2e-33
Q7MF12	560	Choline dehydrogenase OS=	yes	N/A	0.379	0.487	0.363	2e-33

>sp|P18172|DHGL_DROPS Glucose dehydrogenase [acceptor] OS=Drosophila pseudoobscura pseudoobscura GN=Gld PE=3 SV=4

 Score =  171 bits (432), Expect = 2e-41,   Method: Compositional matrix adjust.
 Identities = 114/292 (39%), Positives = 164/292 (56%), Gaps = 17/292 (5%)

Query: 434 FDIIIVGASAAGCVLANRLSEVSSLKVLLIEAGGDTPIHSRIPGMSSVLSLSEFDHAYLA 493
           +D I++G  +AG V+A+RLSEV   KVLLIEAGGD P+ ++IP M      S+ D+ Y  
Sbjct: 65  YDFIVIGGGSAGSVVASRLSEVPQWKVLLIEAGGDEPVGAQIPSMFLNFIGSDIDYRYNT 124

Query: 494 EPSQFAGLGVRNARIKITAGKGLGGSSAVQNILYQRGTSYDYENFAKLGYNGWGYDETLK 553
           EP + A L     R     GK LGG+S +  ++Y RG   DY+++A  G  GW Y + L 
Sbjct: 125 EPERMACLSSMEQRCYWPRGKVLGGTSVMNGMMYIRGNREDYDDWAAQGNPGWSYQDVLP 184

Query: 554 YFVKSEDYRSVIYNESKAV----HGTQGYLPVGLFKNKENNIIREIFETSAQELGYPCPK 609
           +F KSED       E  AV    H   G LPVG F    N  +      + +E+G+   +
Sbjct: 185 FFKKSEDNL-----ELDAVGTEYHAKGGLLPVGKF--PYNPPLSYALLKAGEEMGFSV-Q 236

Query: 610 DMNDRYVDVGFAELPGMTRYGLRFSAADAYLTPIAGKRTNLYVLKRSKVTKVIIN--DQN 667
           D+N +    GF       R G+R+S+A A+L P A  R NL++L  + VTKV+I+   +N
Sbjct: 237 DLNGQN-STGFMIAQMTARNGIRYSSARAFLRP-ARMRNNLHILLNTTVTKVLIHPGTKN 294

Query: 668 VATGVEYVNSKGETVRVTANKEVILTAGAIANAQLLLLSGIGPKAHLDEVKI 719
           V  GVE  +  G   ++   KEVI++ GA+ + Q+LLLSG+GPK  L +V +
Sbjct: 295 V-VGVEVSDQFGSMRKILVKKEVIVSGGAVNSPQILLLSGVGPKEDLQKVNV 345

Drosophila pseudoobscura pseudoobscura (taxid: 46245)
EC: 1EC: .EC: 1EC: .EC: 9EC: 9EC: .EC: 1EC: 0

>sp|P18173|DHGL_DROME Glucose dehydrogenase [acceptor] OS=Drosophila melanogaster GN=Gld PE=3 SV=3

 Score =  168 bits (426), Expect = 1e-40,   Method: Compositional matrix adjust.
 Identities = 111/288 (38%), Positives = 161/288 (55%), Gaps = 9/288 (3%)

Query: 434 FDIIIVGASAAGCVLANRLSEVSSLKVLLIEAGGDTPIHSRIPGMSSVLSLSEFDHAYLA 493
           +D I++G  +AG V+A+RLSEV   KVLLIEAGGD P+ ++IP M      S+ D+ Y  
Sbjct: 65  YDFIVIGGGSAGSVVASRLSEVPQWKVLLIEAGGDEPVGAQIPSMFLNFIGSDIDYRYNT 124

Query: 494 EPSQFAGLGVRNARIKITAGKGLGGSSAVQNILYQRGTSYDYENFAKLGYNGWGYDETLK 553
           EP   A L     R     GK LGG+S +  ++Y RG   DY+++A  G  GW Y++ L 
Sbjct: 125 EPEPMACLSSMEQRCYWPRGKVLGGTSVLNGMMYVRGNREDYDDWAADGNPGWAYNDVLP 184

Query: 554 YFVKSEDYRSVIYNESKAVHGTQGYLPVGLFKNKENNIIREIFETSAQELGYPCPKDMND 613
           +F KSED    +       H   G LPVG F    N  +      + +ELG+    D+N 
Sbjct: 185 FFKKSEDNLD-LDEVGTEYHAKGGLLPVGKF--PYNPPLSYAILKAGEELGFSV-HDLNG 240

Query: 614 RYVDVGFAELPGMTRYGLRFSAADAYLTPIAGKRTNLYVLKRSKVTKVII--NDQNVATG 671
           +    GF       R G+R+S+A A+L P A  R NL++L  +  TK++I  + +NV  G
Sbjct: 241 QN-STGFMIAQMTARNGIRYSSARAFLRP-ARMRNNLHILLNTTATKILIHPHTKNV-LG 297

Query: 672 VEYVNSKGETVRVTANKEVILTAGAIANAQLLLLSGIGPKAHLDEVKI 719
           VE  +  G T ++   KEV+L+AGA+ +  +LLLSG+GPK  L +V +
Sbjct: 298 VEVSDQFGSTRKILVKKEVVLSAGAVNSPHILLLSGVGPKDELQQVNV 345

Essential for cuticular modification during development.

Drosophila melanogaster (taxid: 7227)

EC: 1

EC: .

EC: 1

EC: .

EC: 9

EC: 9

EC: .

EC: 1

EC: 0

>sp|Q6LGH5|BETA_PHOPR Choline dehydrogenase OS=Photobacterium profundum GN=betA PE=3 SV=1

 Score =  154 bits (388), Expect = 3e-36,   Method: Compositional matrix adjust.
 Identities = 112/295 (37%), Positives = 161/295 (54%), Gaps = 28/295 (9%)

Query: 434 FDIIIVGASAAGCVLANRLSEVSSLKVLLIEAGG-DTPIHSRIPGMSSVLS--LSEFDHA 490
           +D IIVGA +AGCVLA+RLS      +LL+EAGG D  I  ++P   + LS  ++   +A
Sbjct: 5   YDYIIVGAGSAGCVLADRLSASGEHYILLLEAGGSDRSIFIQMP---TALSYPMNSEKYA 61

Query: 491 YLAEPSQFAGLGVRNARIKITAGKGLGGSSAVQNILYQRGTSYDYENFAKLGYNGWGYDE 550
           +  E    AGL  R+  +    G+ LGGSS++  ++Y RG + DY+ + + G  GW Y E
Sbjct: 62  WQFETQPEAGLDSRS--LHCPRGRVLGGSSSINGMVYVRGHACDYDEWVEQGAEGWSYQE 119

Query: 551 TLKYFVKSEDYRSVIYNESKAVHGTQGYL----PVGLF--KNKENNIIREIFETSAQELG 604
            L YF ++E +          +HG   Y     PVG     + E N + + F  + Q+ G
Sbjct: 120 CLPYFRRAESW----------IHGEDTYRGGDGPVGTCNGNDMELNPLYQAFIDAGQQAG 169

Query: 605 YPCPKDMNDRYVDVGFAELPGMTRYGLRFSAADAYLTPIAGKRTNLYVLKRSKVTKVIIN 664
           YP   D N  Y   GF  +      G+R S ++AYL   A KR+NL V K     KV+I 
Sbjct: 170 YPKTDDYNG-YQQEGFGPMHMTVDKGIRASTSNAYLRR-AMKRSNLTVRKGVVTRKVLIK 227

Query: 665 DQNVATGVEYVNSKGETVRVTANKEVILTAGAIANAQLLLLSGIGPKAHLDEVKI 719
           ++  A GVE +   G+   V AN EV+L+AG++ + QLL LSGIGPKA L++  I
Sbjct: 228 NKQ-AIGVE-IEVGGKVQSVYANTEVLLSAGSVGSPQLLQLSGIGPKAVLEQAGI 280

Can catalyze the oxidation of choline to betaine aldehyde and betaine aldehyde to glycine betaine.

Photobacterium profundum (taxid: 74109)

EC: 1

EC: .

EC: 1

EC: .

EC: 9

EC: 9

EC: .

EC: 1

>sp|A7N2P9|BETA_VIBHB Choline dehydrogenase OS=Vibrio harveyi (strain ATCC BAA-1116 / BB120) GN=betA PE=3 SV=1

 Score =  150 bits (380), Expect = 3e-35,   Method: Compositional matrix adjust.
 Identities = 103/289 (35%), Positives = 156/289 (53%), Gaps = 16/289 (5%)

Query: 434 FDIIIVGASAAGCVLANRLSEVSSLKVLLIEAGG-DTPIHSRIPGMSSVLSLSEFDHAYL 492
           +D IIVGA +AGCVLA+RLSE    +VLL+EAGG D  I  ++P   + LS       Y 
Sbjct: 5   YDYIIVGAGSAGCVLADRLSESGQHQVLLLEAGGSDKSIFIQMP---TALSYPMNTEKYA 61

Query: 493 AEPSQFAGLGVRNARIKITAGKGLGGSSAVQNILYQRGTSYDYENFAKLGYNGWGYDETL 552
            +    A  G+   ++    GK LGGSS++  ++Y RG + D++ +   G  GW Y   L
Sbjct: 62  WQFETVAEEGLDGRQLHCPRGKVLGGSSSINGMVYVRGHACDFDEWEAEGAKGWNYQACL 121

Query: 553 KYFVKSEDYRSVIYNESKAVHGTQGYLPVGLFKNKENNI--IREIFETSAQELGYPCPKD 610
            YF K+E +     +E +   G     PVG     +  +  + + F  + ++ GYP  +D
Sbjct: 122 PYFRKAETWTGGA-DEYRGGSG-----PVGTCNGNDMKLNPLYQAFIEAGKDAGYPETQD 175

Query: 611 MNDRYVDVGFAELPGMTRYGLRFSAADAYLTPIAGKRTNLYVLKRSKVTKVIINDQNVAT 670
            N  Y   GF  +      G+R S ++AYL+  A KR+N  ++K     ++++  +  A 
Sbjct: 176 YNG-YQQEGFGPMHMTVDKGVRASTSNAYLSR-AKKRSNFTLMKGVTAHRILLEGKK-AV 232

Query: 671 GVEYVNSKGETVRVTANKEVILTAGAIANAQLLLLSGIGPKAHLDEVKI 719
           G+E+  S GE  +  ANKEV+ +AG+I + QLL LSGIGPK  LD+  I
Sbjct: 233 GIEFEQS-GEIKQCFANKEVVSSAGSIGSVQLLQLSGIGPKTVLDKAGI 280

Can catalyze the oxidation of choline to betaine aldehyde and betaine aldehyde to glycine betaine.

Vibrio harveyi (strain ATCC BAA-1116 / BB120) (taxid: 338187)

EC: 1

EC: .

EC: 1

EC: .

EC: 9

EC: 9

EC: .

EC: 1

>sp|Q47944|SDH_GLUOY L-sorbose 1-dehydrogenase OS=Gluconobacter oxydans PE=3 SV=1

 Score =  149 bits (377), Expect = 6e-35,   Method: Compositional matrix adjust.
 Identities = 109/289 (37%), Positives = 156/289 (53%), Gaps = 17/289 (5%)

Query: 434 FDIIIVGASAAGCVLANRLSEVSSLKVLLIEAGG-DTPIHSRIPGMSSVLSLSEFDHAYL 492
           FD I+VG  +AGCVLA RLSE  S++V LIEAG  DT     +P   + ++        L
Sbjct: 5   FDYIVVGGGSAGCVLAARLSENPSVRVCLIEAGRRDTHPLIHMPVGFAKMTTGPHTWDLL 64

Query: 493 AEPSQFAGLGVRNARIKITAGKGLGGSSAVQNILYQRGTSYDYENFAKLGYNGWGYDETL 552
            EP + A     N +I    G+ LGG S++   ++ RG   D++ +A  G +GW + +  
Sbjct: 65  TEPQKHA----NNRQIPYVQGRILGGGSSINAEVFTRGHPSDFDRWAAEGADGWSFRDVQ 120

Query: 553 KYFVKSEDYRSVIYNESKAVHGTQGYLPVGLFKNKENNIIREIFETSAQELGYPCPKDMN 612
           KYF++SE   + ++  S   HGT G  P+G+    E N     F  S QE+G P   D N
Sbjct: 121 KYFIRSEG--NAVF--SGTWHGTNG--PLGVSNLAEPNPTSRAFVQSCQEMGLPYNPDFN 174

Query: 613 DRYVDVGFAELPGMT-RYGLRFSAADAYLTPIAGKRTNLYVLKRSKVTKVIINDQNVATG 671
               +   A +  MT R   R S A  YL P  G R NL V+ R+ V K++ N    ATG
Sbjct: 175 GASQE--GAGIYQMTIRNNRRCSTAVGYLRPALG-RKNLTVVTRALVLKIVFNGTR-ATG 230

Query: 672 VEYVNSKGETVRVTANKEVILTAGAIANAQLLLLSGIGPKAHLDEVKIP 720
           V+Y+ + G      A++E+++TAGAI   +L++LSG+GP AHL E  IP
Sbjct: 231 VQYI-ANGTLNTAEASQEIVVTAGAIGTPKLMMLSGVGPAAHLRENGIP 278

Gluconobacter oxydans (taxid: 442)

EC: 1

EC: .

EC: 1

EC: .

EC: 9

EC: 9

EC: .

EC: 3

EC: 2

>sp|Q6FDF9|BETA_ACIAD Choline dehydrogenase OS=Acinetobacter sp. (strain ADP1) GN=betA PE=3 SV=1

 Score =  148 bits (373), Expect = 2e-34,   Method: Compositional matrix adjust.
 Identities = 108/294 (36%), Positives = 157/294 (53%), Gaps = 20/294 (6%)

Query: 434 FDIIIVGASAAGCVLANRLSEVSSLKVLLIEAGG---DTPIHSRIPGMSSV-LSLSEFDH 489
           FD II+GA +AG VLA RL+E + + VLL+EAGG        +++P   +  L    ++ 
Sbjct: 6   FDYIIIGAGSAGNVLAARLTEDADVSVLLLEAGGPDYRLDFRTQMPAALAYPLQGRRYNW 65

Query: 490 AYLAEPSQFAGLGVRNARIKITAGKGLGGSSAVQNILYQRGTSYDYENFAKL-GYNGWGY 548
           AYL EP       + N R++   GKGLGGSS +  + Y RG + D E ++KL G   W Y
Sbjct: 66  AYLTEPEPH----MNNRRMECGRGKGLGGSSLINGMCYIRGNAMDLEGWSKLKGLENWTY 121

Query: 549 DETLKYFVKSEDYRSVIYNESKAVHGTQGYLPVGLFKNKENNIIREIFETSAQELGYPCP 608
            + L Y+ K+E  R +  N+    HG  G + V   K+  N +   + E   Q  GYP  
Sbjct: 122 ADCLPYYKKAET-RDIGGND---YHGDHGPVSVATPKDNNNVLFHAMVEAGVQA-GYPRT 176

Query: 609 KDMNDRYVDVGFAELP-GMTRYGLRFSAADAYLTPIAGKRTNLYVLKRSKVTKVIINDQN 667
            D+N  Y   GF  +   +T+ G R S A  YL  +A +R NL ++  +   K++ N + 
Sbjct: 177 DDLNG-YQQEGFGPMDRTVTKNGRRSSTARGYL-DMAKERPNLTIITHAMTNKILFNGKQ 234

Query: 668 VATGVEYVNS--KGETVRVTANKEVILTAGAIANAQLLLLSGIGPKAHLDEVKI 719
            A GVEY+    K +  +V ANKEV+L AGAIA+ Q+L  SG+G    L  + I
Sbjct: 235 -AIGVEYIQGADKRDLKKVMANKEVLLCAGAIASPQILQRSGVGESTFLKSMDI 287

Can catalyze the oxidation of choline to betaine aldehyde and betaine aldehyde to glycine betaine.

Acinetobacter sp. (strain ADP1) (taxid: 62977)

EC: 1

EC: .

EC: 1

EC: .

EC: 9

EC: 9

EC: .

EC: 1

>sp|Q1QXE1|BETA1_CHRSD Choline dehydrogenase OS=Chromohalobacter salexigens (strain DSM 3043 / ATCC BAA-138 / NCIMB 13768) GN=betA PE=3 SV=1

 Score =  145 bits (365), Expect = 1e-33,   Method: Compositional matrix adjust.
 Identities = 112/294 (38%), Positives = 160/294 (54%), Gaps = 21/294 (7%)

Query: 434 FDIIIVGASAAGCVLANRLSEVSSLKVLLIEAGG---DTPIHSRIPG-MSSVLSLSEFDH 489
           +D II+GA +AG VLA RL+E   ++VLL+EAGG        +++P  ++  L    ++ 
Sbjct: 7   YDYIIIGAGSAGNVLATRLTEDPDVQVLLLEAGGPDYRFDFRTQMPAALAYPLQGKRYNW 66

Query: 490 AYLAEPSQFAGLGVRNARIKITAGKGLGGSSAVQNILYQRGTSYDYENFAKL-GYNGWGY 548
           A+  +P  +    + N R++   GKGLGGSS +  + Y RG + DY+N+AK+ G   W Y
Sbjct: 67  AFETDPEPY----MNNRRMECGRGKGLGGSSLINGMCYLRGNALDYDNWAKIPGLEDWNY 122

Query: 549 DETLKYFVKSEDYRSVIYNESKAVHGTQGYLPVGLFKNKE-NNIIREIFETSAQELGYPC 607
            + L YF ++E  R +  N+    HG  G  PV +   KE NN +   F  +  E GYP 
Sbjct: 123 LQCLPYFKRAET-RDIGPND---YHGGDG--PVSVATPKEGNNELYGAFIRAGIEAGYPA 176

Query: 608 PKDMNDRYVDVGFAELPGMTR-YGLRFSAADAYLTPIAGKRTNLYVLKRSKVTKVIINDQ 666
            +D+N  Y   GF  +   T   G R S A  YL  IA +R NL  ++    T VI  + 
Sbjct: 177 TEDVNG-YQQEGFGPMDRTTTPNGRRASTARGYLD-IAKQRPNL-TIETHATTDVIEFEG 233

Query: 667 NVATGVEYVNSKGETVRVTANKEVILTAGAIANAQLLLLSGIGPKAHLDEVKIP 720
             A GV Y   KG+  RV A +EV+L AGAIA+ Q+L  SG+G   HL+E  IP
Sbjct: 234 KRAVGVSY-ERKGQAQRVRARREVLLCAGAIASPQILQRSGVGNPEHLEEFDIP 286

Can catalyze the oxidation of choline to betaine aldehyde and betaine aldehyde to glycine betaine.

Chromohalobacter salexigens (strain DSM 3043 / ATCC BAA-138 / NCIMB 13768) (taxid: 290398)

EC: 1

EC: .

EC: 1

EC: .

EC: 9

EC: 9

EC: .

EC: 1

>sp|Q1IG70|BETA_PSEE4 Choline dehydrogenase OS=Pseudomonas entomophila (strain L48) GN=betA PE=3 SV=1

 Score =  145 bits (365), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 110/294 (37%), Positives = 158/294 (53%), Gaps = 19/294 (6%)

Query: 434 FDIIIVGASAAGCVLANRLSEVSSLKVLLIEAGG---DTPIHSRIPGMSSV-LSLSEFDH 489
           FD IIVGA +AG  LA RL+E +S+ VLL+EAGG        +++P   +  L    ++ 
Sbjct: 5   FDYIIVGAGSAGNTLATRLTEDASVSVLLLEAGGPDYRFDFRTQMPAALAFPLQGRRYNW 64

Query: 490 AYLAEPSQFAGLGVRNARIKITAGKGLGGSSAVQNILYQRGTSYDYENFAKL-GYNGWGY 548
           AY  +P  F    +   R++   GKGLGGSS +  + Y RG + D++ +A+L G   W Y
Sbjct: 65  AYETDPEPF----MDGRRMECGRGKGLGGSSLINGMCYIRGNAMDFDGWAELPGLEDWTY 120

Query: 549 DETLKYFVKSEDYRSVIYNESKAVHGTQGYLPVGLFKNKENNIIREIFETSAQELGYPCP 608
            + L YF K+E  R +  N+    HG +G + V   K   N +   + E   Q  GYP  
Sbjct: 121 LDCLPYFRKAET-RDIGPND---YHGGEGPVSVATPKAGNNPLFHAMVEAGVQA-GYPRT 175

Query: 609 KDMNDRYVDVGFAELP-GMTRYGLRFSAADAYLTPIAGKRTNLYVLKRSKVTKVIINDQN 667
           +D+N  Y   GF  +   +T+ G R S A  YL   A KR NL ++  +   +V+  D  
Sbjct: 176 EDLNG-YQQEGFGPMDRSVTKKGRRSSTARGYLDQ-AKKRPNLTIVTHALSDRVLF-DGK 232

Query: 668 VATGVEY-VNSKGETVRVTANKEVILTAGAIANAQLLLLSGIGPKAHLDEVKIP 720
            A GV Y V    E V   A KEVI+++GAIA+ QLL  SG+GP+A L+ + IP
Sbjct: 233 RAVGVTYLVGDSEERVEARARKEVIVSSGAIASPQLLQRSGVGPRALLESLDIP 286

Can catalyze the oxidation of choline to betaine aldehyde and betaine aldehyde to glycine betaine.

Pseudomonas entomophila (strain L48) (taxid: 384676)

EC: 1

EC: .

EC: 1

EC: .

EC: 9

EC: 9

EC: .

EC: 1

>sp|Q8D3K2|BETA_VIBVU Choline dehydrogenase OS=Vibrio vulnificus (strain CMCP6) GN=betA PE=3 SV=1

 Score =  144 bits (364), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 105/289 (36%), Positives = 156/289 (53%), Gaps = 16/289 (5%)

Query: 434 FDIIIVGASAAGCVLANRLSEVSSLKVLLIEAGG-DTPIHSRIPGMSSVLS--LSEFDHA 490
           +D IIVGA +AGCVLA+RLSE     VLL+EAGG D  I  ++P   + LS  ++   +A
Sbjct: 5   YDYIIVGAGSAGCVLADRLSESGDHSVLLLEAGGSDKSIFIQMP---TALSYPMNSEKYA 61

Query: 491 YLAEPSQFAGLGVRNARIKITAGKGLGGSSAVQNILYQRGTSYDYENFAKLGYNGWGYDE 550
           +  E    A L  R  R+    GK LGGSS++  ++Y RG + D++ + + G  GW Y  
Sbjct: 62  WQFETDAEADLDGR--RLHCPRGKVLGGSSSINGMVYVRGHACDFDEWEEQGAKGWNYQA 119

Query: 551 TLKYFVKSEDYRSVIYNESKAVHGTQGYLPVGLFKNKENNIIREIFETSAQELGYPCPKD 610
            L YF ++E++   I  E +   G  G L          N +   F  + +E GYP   D
Sbjct: 120 CLPYFRRAENW---IDGEDE-YRGGDGPLSTCAGNKMTLNPLYRAFIDAGKEAGYPETSD 175

Query: 611 MNDRYVDVGFAELPGMTRYGLRFSAADAYLTPIAGKRTNLYVLKRSKVTKVIINDQNVAT 670
            N  Y   GF  +    + G+R S ++AYL+  A KR+N  ++K   V ++++ ++  A 
Sbjct: 176 YNG-YQQEGFGPMHMTVKNGVRASTSNAYLSR-AKKRSNFKLIKGVVVQRILLEEKR-AV 232

Query: 671 GVEYVNSKGETVRVTANKEVILTAGAIANAQLLLLSGIGPKAHLDEVKI 719
           GVE+    GE     A  EVI +AG+I + QLL LSGIGPK  L++  +
Sbjct: 233 GVEF-ELAGELRTCFAKNEVISSAGSIGSVQLLQLSGIGPKTVLEKAGV 280

Can catalyze the oxidation of choline to betaine aldehyde and betaine aldehyde to glycine betaine.

Vibrio vulnificus (taxid: 672)

EC: 1

EC: .

EC: 1

EC: .

EC: 9

EC: 9

EC: .

EC: 1

>sp|Q7MF12|BETA_VIBVY Choline dehydrogenase OS=Vibrio vulnificus (strain YJ016) GN=betA PE=3 SV=1

 Score =  144 bits (364), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 105/289 (36%), Positives = 156/289 (53%), Gaps = 16/289 (5%)

Query: 434 FDIIIVGASAAGCVLANRLSEVSSLKVLLIEAGG-DTPIHSRIPGMSSVLS--LSEFDHA 490
           +D IIVGA +AGCVLA+RLSE     VLL+EAGG D  I  ++P   + LS  ++   +A
Sbjct: 5   YDYIIVGAGSAGCVLADRLSESGDHSVLLLEAGGSDKSIFIQMP---TALSYPMNSEKYA 61

Query: 491 YLAEPSQFAGLGVRNARIKITAGKGLGGSSAVQNILYQRGTSYDYENFAKLGYNGWGYDE 550
           +  E    A L  R  R+    GK LGGSS++  ++Y RG + D++ + + G  GW Y  
Sbjct: 62  WQFETDAEADLDGR--RLHCPRGKVLGGSSSINGMVYVRGHACDFDEWEEQGAKGWNYQA 119

Query: 551 TLKYFVKSEDYRSVIYNESKAVHGTQGYLPVGLFKNKENNIIREIFETSAQELGYPCPKD 610
            L YF ++E++   I  E +   G  G L          N +   F  + +E GYP   D
Sbjct: 120 CLPYFRRAENW---IDGEDE-YRGGDGPLSTCAGNKMTLNPLYRAFIDAGKEAGYPETSD 175

Query: 611 MNDRYVDVGFAELPGMTRYGLRFSAADAYLTPIAGKRTNLYVLKRSKVTKVIINDQNVAT 670
            N  Y   GF  +    + G+R S ++AYL+  A KR+N  ++K   V ++++ ++  A 
Sbjct: 176 YNG-YQQEGFGPMHMTVKNGVRASTSNAYLSR-AKKRSNFKLIKGVVVQRILLEEKR-AV 232

Query: 671 GVEYVNSKGETVRVTANKEVILTAGAIANAQLLLLSGIGPKAHLDEVKI 719
           GVE+    GE     A  EVI +AG+I + QLL LSGIGPK  L++  +
Sbjct: 233 GVEF-ELAGELRTCFAKNEVISSAGSIGSVQLLQLSGIGPKTVLEKAGV 280

Can catalyze the oxidation of choline to betaine aldehyde and betaine aldehyde to glycine betaine.

Vibrio vulnificus (strain YJ016) (taxid: 196600)

EC: 1

EC: .

EC: 1

EC: .

EC: 9

EC: 9

EC: .

EC: 1

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	720
193676365	1147	PREDICTED: hypothetical protein LOC10015	0.448	0.281	0.410	3e-58
345488948	616	PREDICTED: glucose dehydrogenase [accept	0.381	0.446	0.417	1e-51
345488938	633	PREDICTED: glucose dehydrogenase [accept	0.388	0.442	0.423	2e-51
405978093	621	Glucose dehydrogenase [acceptor] [Crasso	0.4	0.463	0.432	4e-50
345488836	592	PREDICTED: glucose dehydrogenase [accept	0.390	0.474	0.419	1e-49
156550442	660	PREDICTED: glucose dehydrogenase [accept	0.391	0.427	0.416	3e-49
332023081	625	Glucose dehydrogenase [Acromyrmex echina	0.411	0.473	0.418	5e-49
239050502	605	glucose dehydrogenase-like venom protein	0.415	0.494	0.375	1e-48
345488840	581	PREDICTED: glucose dehydrogenase [accept	0.390	0.483	0.401	2e-48
156551708	624	PREDICTED: glucose dehydrogenase [accept	0.388	0.448	0.416	3e-48

>gi|193676365|ref|XP_001949532.1| PREDICTED: hypothetical protein LOC100159632 [Acyrthosiphon pisum]

 Score =  233 bits (594), Expect = 3e-58,   Method: Compositional matrix adjust.
 Identities = 137/334 (41%), Positives = 192/334 (57%), Gaps = 11/334 (3%)

Query: 390 NSLYHPGNPDSPYDWQRLEKERYNIYRSVIYPPDMTPYVKSGDCFDIIIVGASAAGCVLA 449
           NS+   G   S  D+QR     Y +    IYP D T YV + + FD IIVG   AGCVLA
Sbjct: 545 NSVGIIGEVLSQLDYQR-----YKLMDDSIYPQDSTRYVINDEEFDFIIVGGGNAGCVLA 599

Query: 450 NRLSEVSSLKVLLIEAGGD-TPIHSRIPGMSSVLSLSEFDHAYLAEPSQFAGLGVRNARI 508
           N+LSE    KVLLIEAGGD  PI ++IP +      S  D  +  +P    G G+    +
Sbjct: 600 NKLSENVKWKVLLIEAGGDPFPI-TQIPSLWDRSLNSVADWQFKIQPDSTTGFGI-GGNM 657

Query: 509 KITAGKGLGGSSAVQNILYQRGTSYDYENFAKLGYNGWGYDETLKYFVKSEDYRSVIYNE 568
           KI  G+GLGGSS     LY RG+   Y +  K G   W Y+ T  YF K E  RS+   E
Sbjct: 658 KIHKGRGLGGSSITSAQLYVRGSEQLYNSLVKKGLKNWSYNTTETYFKKVERIRSITKTE 717

Query: 569 S-KAVHGTQGYLPVGLFKNKENNIIREIFETSAQELGYPCPKDMNDRYVDVGFAELPGMT 627
           +   ++G  G +PV  F+  E +++ +I  +  + +G     D+N++ ++VGF  + G+ 
Sbjct: 718 TNTTIYGKCGLIPVSKFRKTEVSVLEKIVCSGFEHIGCKKESDINEKDIEVGFVSMQGII 777

Query: 628 RYGLRFSAADAYLTPIAGKRTNLYVLKRSKVTKVIINDQNV-ATGVEYVNSKGETVRVTA 686
           + G   + A AYL+PI G R NL V+K S+VTK+I+N   + ATGVE     G+T+ + A
Sbjct: 778 KNGRSINTAKAYLSPIFG-RENLKVMKYSRVTKIIVNKTEMKATGVEVQTKFGQTLTIKA 836

Query: 687 NKEVILTAGAIANAQLLLLSGIGPKAHLDEVKIP 720
             EV+L AGA+ +AQ+LL SGIGPK HL E+++P
Sbjct: 837 KLEVLLCAGAVGSAQILLASGIGPKKHLSEMEVP 870

Source: Acyrthosiphon pisum

Species: Acyrthosiphon pisum

Genus: Acyrthosiphon

Family: Aphididae

Order: Hemiptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|345488948|ref|XP_001600924.2| PREDICTED: glucose dehydrogenase [acceptor]-like [Nasonia vitripennis]

 Score =  211 bits (537), Expect = 1e-51,   Method: Compositional matrix adjust.
 Identities = 124/297 (41%), Positives = 178/297 (59%), Gaps = 22/297 (7%)

Query: 434 FDIIIVGASAAGCVLANRLSEVSSLKVLLIEAGGDTPIHSRIPGMSSVLSLSEFDHAYLA 493
           FD I+VGA +AGCV+ANRLSE+   K+LL+EAG + P  + IPG+ S+L  S  D+AY +
Sbjct: 60  FDFIVVGAGSAGCVVANRLSEIHDWKILLLEAGDEAPGITDIPGLLSLLQKSSVDYAYKS 119

Query: 494 EPSQFAGLGVRNARIKITAGKGLGGSSAVQNILYQRGTSYDYENFAKLGYNGWGYDETLK 553
           +P   +     N++ +  +GK +GG+S++  +LY RG+ YD++N+A LG  GW ++E L 
Sbjct: 120 QPEPMSCQAEPNSQCEFYSGKMMGGTSSLNVMLYVRGSKYDFDNWAALGNTGWSWNEVLP 179

Query: 554 YFVKSEDYRSV-IYNESKAVHGTQGYLPV--GLFKNKENNIIREIFETSAQELGYPCPKD 610
           YF+KSED R   +  ++   H   GYL V   ++ ++    + E +    QELGY     
Sbjct: 180 YFLKSEDQRDKEVLQQNPEYHSRGGYLTVERQIYYDENERALLEAW----QELGYS---- 231

Query: 611 MNDRYVDVGFAELPGMTRY------GLRFSAADAYLTPIAGKRTNLYVLKRSKVTKVIIN 664
                +D    EL G  R       G R S   A++ PI G+R NL++   S+VTKV+I+
Sbjct: 232 ----EIDYNTGELIGTARMQYTKIDGARQSTNGAFIRPIRGQRHNLHIRVNSRVTKVLID 287

Query: 665 -DQNVATGVEYVNSKGETVRVTANKEVILTAGAIANAQLLLLSGIGPKAHLDEVKIP 720
            +    TGVEYV+  G   RV A KEVIL+AG+IA  +LL+LSGIGP   L EV IP
Sbjct: 288 PNTRQTTGVEYVDKSGNLKRVYARKEVILSAGSIATPKLLMLSGIGPYHDLLEVGIP 344

Source: Nasonia vitripennis

Species: Nasonia vitripennis

Genus: Nasonia

Family: Pteromalidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

>gi|345488938|ref|XP_001600775.2| PREDICTED: glucose dehydrogenase [acceptor]-like [Nasonia vitripennis]

 Score =  210 bits (535), Expect = 2e-51,   Method: Compositional matrix adjust.
 Identities = 124/293 (42%), Positives = 175/293 (59%), Gaps = 13/293 (4%)

Query: 432 DCFDIIIVGASAAGCVLANRLSEVSSLKVLLIEAGGDTPIHSRIPGMSSVLSLSEFDHAY 491
           D FD +IVGA AAGCVLANRLSEV + K+LL+EAG + P  + +P ++ +L LS  D+AY
Sbjct: 56  DDFDFVIVGAGAAGCVLANRLSEVKNWKILLLEAGDEEPAVANVPALARILRLSSIDYAY 115

Query: 492 LAEPSQFAGLGVRNARIKITAGKGLGGSSAVQNILYQRGTSYDYENFAKLGYNGWGYDET 551
             +P +F GLG  N       G+ +GGSS +  + Y RG   DY+++A+LG  GW YDE 
Sbjct: 116 HTQP-EFTGLG--NVSYYWPRGRVMGGSSTINTMWYVRGHKQDYDDWARLGNPGWSYDEV 172

Query: 552 LKYFVKSEDYRS-VIYNESKAVHGTQGYLPVGL--FKNKENNIIREIFETSAQELGYPCP 608
           L YF KSED R   ++  S   H   GY+ V    +++K   IIR  +    +E+G+   
Sbjct: 173 LPYFKKSEDARDPEVFTRSPETHSRGGYMTVERYPYQDKNTKIIRNAW----REMGF-AE 227

Query: 609 KDMNDRYVDVGFAELPGMTRYGLRFSAADAYLTPIAGKRTNLYVLKRSKVTKVIIN-DQN 667
            D N   V  G ++L   + +G   SA  A+L PI G R NL +   SKV K+II+ D  
Sbjct: 228 TDYNSG-VQFGMSKLQFNSIHGTHQSANGAFLRPIRGSRPNLTIRTNSKVVKIIIDPDSK 286

Query: 668 VATGVEYVNSKGETVRVTANKEVILTAGAIANAQLLLLSGIGPKAHLDEVKIP 720
              GV+Y++SK   + V A KEVI++AG++ + +LL+LSGIGP   L +  IP
Sbjct: 287 RVVGVQYLDSKSRLISVLAKKEVIVSAGSVESPKLLMLSGIGPAEELVQADIP 339

Source: Nasonia vitripennis

Species: Nasonia vitripennis

Genus: Nasonia

Family: Pteromalidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

>gi|405978093|gb|EKC42507.1| Glucose dehydrogenase [acceptor] [Crassostrea gigas]

 Score =  206 bits (523), Expect = 4e-50,   Method: Compositional matrix adjust.
 Identities = 131/303 (43%), Positives = 177/303 (58%), Gaps = 15/303 (4%)

Query: 422 PDMTPYVKSGDCFDIIIVGASAAGCVLANRLSEVSSLKVLLIEAGG---DTPIHSRIPGM 478
           P ++ +V +   +D IIVGA  AGCVLA RLSE   + VLL+EAGG   D P+  R+P  
Sbjct: 38  PRVSGHVSANSSYDYIIVGAGTAGCVLATRLSEYPDISVLLLEAGGSEEDNPV-IRVPFA 96

Query: 479 SSVLSLSEFDHAYLAEPSQFAGLGVRNARIKITAGKGLGGSSAVQNILYQRGTSYDYENF 538
           +  L  SE D AY  EP Q A LG+   R     GK LGGS ++ N++Y RG  +DY+ +
Sbjct: 97  ALELQNSEVDWAYRTEPQQKACLGMDKQRCAWPRGKVLGGSGSINNLIYVRGNRHDYDGW 156

Query: 539 AKLGYNGWGYDETLKYFVKSEDYRSVIYNESKAVHGTQGYLPVGLFKNKENNIIREIFET 598
           A+ G  GW Y + L YF+KSED +   +  S A  G  G LPV   K+     + +I+  
Sbjct: 157 AREGCKGWSYKDVLPYFIKSEDIQISEFRNS-AYRGKGGPLPV---KDGTVTPLADIYRQ 212

Query: 599 SAQELGYPCPKDMNDRYVDVGFAELPGMTRYGLRFSAADAYLTPIAGKRTNLYVLKRSKV 658
           + +ELGY    D N R    G+         G R+S A A+L P A  R NL+V+  + V
Sbjct: 213 AMEELGYTV-TDCNGR-TQTGYCPTQENVMGGERWSTARAFLRP-AMNRPNLHVIMNAHV 269

Query: 659 TKVIINDQNVATGVEYV-NSKGETVRVTANKEVILTAGAIANAQLLLLSGIGPKAHLDEV 717
           TK I+ D+ + TGV ++ ++   TVR T  KEV+LTAGAI N QLL+LSGIGPK HL ++
Sbjct: 270 TK-ILTDKKMVTGVSFIKDNIKHTVRAT--KEVVLTAGAINNPQLLMLSGIGPKKHLQQM 326

Query: 718 KIP 720
            IP
Sbjct: 327 NIP 329

Source: Crassostrea gigas

Species: Crassostrea gigas

Genus: Crassostrea

Family: Ostreidae

Order: Ostreoida

Class: Bivalvia

Phylum: Mollusca

>gi|345488836|ref|XP_003425992.1| PREDICTED: glucose dehydrogenase [acceptor]-like [Nasonia vitripennis]

 Score =  204 bits (520), Expect = 1e-49,   Method: Compositional matrix adjust.
 Identities = 123/293 (41%), Positives = 166/293 (56%), Gaps = 12/293 (4%)

Query: 434 FDIIIVGASAAGCVLANRLSEVSSLKVLLIEAGGDTPIHSRIPGMSSVLSLSEFDHAYLA 493
           +D II+G  +AGCVLANRLSEV+  K+LL+E G + PI + IP M  ++S S  D++Y  
Sbjct: 33  YDFIIIGGGSAGCVLANRLSEVTDWKILLLETGDEEPIIADIPAMGFLISGSSVDYSYET 92

Query: 494 EPSQFAGLGVRNARIKITAGKGLGGSSAVQNILYQRGTSYDYENFAKLGYNGWGYDETLK 553
           +P  +A             GK LGGSS +  + Y RG   DY+N+ KLG  GW Y++ L 
Sbjct: 93  QPEPYACRQNEGNTCTWPRGKVLGGSSTINGMWYARGVKEDYDNWVKLGNPGWSYEDVLP 152

Query: 554 YFVKSEDYRSVIYNESK-AVHGTQGYLPVGLF--KNKENNIIREIF-ETSAQELGYPCPK 609
           YF KSED R     E+    HG  GYL V  F   +K + +I E + E +  E+ Y    
Sbjct: 153 YFKKSEDQRDRKLAENNPKNHGIGGYLTVETFLETSKNSEVILEAWKELNLTEIDYVTDG 212

Query: 610 DMNDRYVDVGFAELPGMTRYGLRFSAADAYLTPIAGKRTNLYVLKRSKVTKVIIN-DQNV 668
           D       +G A L     +G+R S    Y+ PI G+R NL +   SKVTKVIIN     
Sbjct: 213 D------SIGTAALQRTVIHGVRQSVNGGYIRPIRGRRKNLTIQLNSKVTKVIINPKTKQ 266

Query: 669 ATGVEYVNSKGETVRVT-ANKEVILTAGAIANAQLLLLSGIGPKAHLDEVKIP 720
           A GVEY+  K +  ++  A KEVIL+AG+I   +LL+LSGIGP  HL E+ +P
Sbjct: 267 AVGVEYIKLKKKVTKIAYATKEVILSAGSIETPRLLMLSGIGPAKHLKELNVP 319

Source: Nasonia vitripennis

Species: Nasonia vitripennis

Genus: Nasonia

Family: Pteromalidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

>gi|156550442|ref|XP_001600742.1| PREDICTED: glucose dehydrogenase [acceptor]-like [Nasonia vitripennis]

 Score =  203 bits (516), Expect = 3e-49,   Method: Compositional matrix adjust.
 Identities = 122/293 (41%), Positives = 167/293 (56%), Gaps = 11/293 (3%)

Query: 434 FDIIIVGASAAGCVLANRLSEVSSLKVLLIEAGGDTPIHSRIPGMSSVLSLSEFDHAYLA 493
           +D IIVGA AAGCVLANRLSE++  K+LL+EAG + P  + +PGM  +L  S  D+AY  
Sbjct: 61  YDFIIVGAGAAGCVLANRLSEITDWKILLLEAGEEEPAIANVPGMCRILKYSSVDYAYKT 120

Query: 494 EPSQFAGLGVRNARIKIT---AGKGLGGSSAVQNILYQRGTSYDYENFAKLGYNGWGYDE 550
           EP     LG R           GK +GGSS +  + Y RG   DY+++A  G  GW Y+E
Sbjct: 121 EPQPI--LGCRRGENHSDYWPRGKVMGGSSTINTMWYVRGNKQDYDDWASFGNPGWSYNE 178

Query: 551 TLKYFVKSEDYRS-VIYNESKAVHGTQGYLPVGLFKNKENNIIREIFETSAQELGYPCPK 609
            L YF K ED R   I  +    HG  G+L V  F +++ N   +    + +ELG+    
Sbjct: 179 VLHYFKKCEDCRDPDIRADFPDSHGIGGFLTVERFPHQDRN--SKTILNAWKELGFK-EI 235

Query: 610 DMNDRYVDVGFAELPGMTRYGLRFSAADAYLTPIAGKRTNLYVLKRSKVTKVIIN-DQNV 668
           D N  Y  +G + L   T +G   +A  AY+ PI GKR NL+V  +  VT+++I+     
Sbjct: 236 DYNSGYTQLGTSRLQFHTIHGAHQTANGAYVRPIRGKRRNLFVKTKCLVTRIVIDPASKR 295

Query: 669 ATGVEYVNSKGETVR-VTANKEVILTAGAIANAQLLLLSGIGPKAHLDEVKIP 720
           A GVEY++    TV+   A KEVI++ GAI + +LL+LSGIGP  HL E  IP
Sbjct: 296 ALGVEYIDQNTNTVQYAHAKKEVIVSGGAIESPKLLMLSGIGPAEHLREAGIP 348

Source: Nasonia vitripennis

Species: Nasonia vitripennis

Genus: Nasonia

Family: Pteromalidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

>gi|332023081|gb|EGI63346.1| Glucose dehydrogenase [Acromyrmex echinatior]

 Score =  202 bits (514), Expect = 5e-49,   Method: Compositional matrix adjust.
 Identities = 128/306 (41%), Positives = 183/306 (59%), Gaps = 10/306 (3%)

Query: 419 IYPPDMTPYVKSGDC-FDIIIVGASAAGCVLANRLSEVSSLKVLLIEAGGDTPIHSRIPG 477
           IYPPD +  + + +  FD IIVG+ +AG VLANRL+E+ + KVLLIEAG +  I S +P 
Sbjct: 38  IYPPDRSEEIATSNREFDFIIVGSGSAGSVLANRLTEIENWKVLLIEAGENPSILSEVP- 96

Query: 478 MSSVLSL-SEFDHAYLAEPSQFAGLGVRNARIKITAGKGLGGSSAVQNILYQRGTSYDYE 536
              VL L S  D+AY  EP +FA  G +N   K + GK LGGSS +  +LY  G+  DY 
Sbjct: 97  TGFVLQLHSSEDYAYDIEPEKFACQGNKNKLCKWSKGKALGGSSTLNAMLYIYGSERDYN 156

Query: 537 NFAKLGYNGWGYDETLKYFVKSEDYRSVIYNESKAVHGTQGYLPVGLFK-NKENNIIREI 595
            ++++G  GW YDE L YF KS++      +E +  +   G  P+ +   N    II E 
Sbjct: 157 EWSEMGNKGWSYDEVLPYFKKSQNCGHGHSDEWRNKYCGHGG-PLNIRHYNFTQPIIHET 215

Query: 596 FETSAQELGYPCPKDMN-DRYVDVGFAELPGMTRYGLRFSAADAYLTPIAGKRTNLYVLK 654
              +A+E+G P    +N D++  +GF +  G    G R S + AYL+PI   R+NLYV+K
Sbjct: 216 ILQAAREMGVPILDTINGDKF--IGFGKAYGTLDKGHRVSVSKAYLSPIK-HRSNLYVMK 272

Query: 655 RSKVTKVIINDQNVATGVEYVNSKGETVRVTANKEVILTAGAIANAQLLLLSGIGPKAHL 714
            ++   +++ D   A GV      G ++ V A+KEVIL+AG+IA+ QLL+LSGIGP+ HL
Sbjct: 273 STRADAILL-DNTRAVGVRVTLKDGRSIDVKASKEVILSAGSIASPQLLMLSGIGPEKHL 331

Query: 715 DEVKIP 720
            E+ IP
Sbjct: 332 REMGIP 337

Source: Acromyrmex echinatior

Species: Acromyrmex echinatior

Genus: Acromyrmex

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|239050502|ref|NP_001155085.1| glucose dehydrogenase-like venom protein [Nasonia vitripennis] gi|239050555|ref|NP_001155086.1| glucose dehydrogenase-like venom protein [Nasonia vitripennis]

 Score =  201 bits (512), Expect = 1e-48,   Method: Compositional matrix adjust.
 Identities = 117/312 (37%), Positives = 179/312 (57%), Gaps = 13/312 (4%)

Query: 415 YRSVIYPPDMTPYVKSGDCFDIIIVGASAAGCVLANRLSEVSSLKVLLIEAGGDTPIHSR 474
           Y S  Y    T        +D I+VGA +AGCV+ANRLSE+   KVLL+EAG + P+ + 
Sbjct: 35  YLSRSYDDKFTDVADDAGEYDFIVVGAGSAGCVVANRLSEIEEWKVLLLEAGDEEPLVAD 94

Query: 475 IPGMSSVLSLSEFDHAYLAEPSQFAGLGVRNARIKITAGKGLGGSSAVQNILYQRGTSYD 534
           +PG++  L  S  D+ Y  +P    G  V+N  +    GK +GGSS +  ++Y RG+  D
Sbjct: 95  VPGLTWTLHGSSIDYGYKTQPKNVKGAPVKNRTLYYGRGKVMGGSSTINGMMYVRGSRQD 154

Query: 535 YENFAKLGYNGWGYDETLKYFVKSEDYRSV-IYNESKAVHGTQGYLPVGLFKNKENN--I 591
           Y+++ +LG  GW YDE L YF KSED R + +  ++   H T GYL V  +++   N   
Sbjct: 155 YDDWVELGNAGWSYDEVLPYFKKSEDMRDLEVLRKNPDYHSTGGYLTVEGYQHTGVNSQA 214

Query: 592 IREIF-ETSAQELGYPCPKDMNDRYVDVGFAELPGMTRYGLRFSAADAYLTPIAGKRTNL 650
           I+E + E   +E+ Y            +G + +     +G + S   A++ PI G+R+NL
Sbjct: 215 IKEAWKELGLEEVDYNTDN-------QIGTSRMQTTKIHGAKQSTNGAFIRPIRGRRSNL 267

Query: 651 YVLKRSKVTKVIINDQN-VATGVEYVNSKGETV-RVTANKEVILTAGAIANAQLLLLSGI 708
            +  R++ TK+II++ +  A GVEYV+ +     RV A+KEVI++AG I + +LL+LSG+
Sbjct: 268 AIKSRARATKIIIDESSKKAIGVEYVDERTNAAKRVFASKEVIVSAGVIDSPKLLMLSGV 327

Query: 709 GPKAHLDEVKIP 720
           GP   L+E  IP
Sbjct: 328 GPARDLEEAGIP 339

Source: Nasonia vitripennis

Species: Nasonia vitripennis

Genus: Nasonia

Family: Pteromalidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|345488840|ref|XP_001601165.2| PREDICTED: glucose dehydrogenase [acceptor]-like [Nasonia vitripennis]

 Score =  200 bits (509), Expect = 2e-48,   Method: Compositional matrix adjust.
 Identities = 118/294 (40%), Positives = 170/294 (57%), Gaps = 13/294 (4%)

Query: 432 DCFDIIIVGASAAGCVLANRLSEVSSLKVLLIEAGGDTPIHSRIPGMSSVLSLSEFDHAY 491
           D FD I+VGA +AGCV+ANRLSE+   KVLL+E+G + P  + +PG+  VL  S  D+ Y
Sbjct: 32  DEFDFIVVGAGSAGCVVANRLSEIEQWKVLLLESGDEEPAVTGVPGLWPVLRSSSLDYGY 91

Query: 492 LAEPSQFAGLGVRNARIKITAGKGLGGSSAVQNILYQRGTSYDYENFAKLGYNGWGYDET 551
             EP         N    +  GK +GG+SA+ +++Y RG   DY+++  LG  GWG+++ 
Sbjct: 92  YTEPEHAICAAAANKSCHVFRGKVMGGTSALNDMIYARGNKQDYDDWENLGNAGWGFEDV 151

Query: 552 LKYFVKSEDYRS-VIYNESKAVHGTQGYLPVGLF--KNKENNIIREIF-ETSAQELGYPC 607
           L YF KSED +  ++  ++   HGT GYL    F  KNK    I + + E   +E+ Y  
Sbjct: 152 LPYFKKSEDAKDPLLLAKNPDSHGTGGYLTTEQFPYKNKNGRAIIDAWKELGLEEVDYNS 211

Query: 608 PKDMNDRYVDVGFAELPGMTRYGLRFSAADAYLTPIAGKRTNLYVLKRSKVTKVIIND-Q 666
                     VG + L   + +G R S   A++ PI G+R+NL V   S+VT+V+IN   
Sbjct: 212 GS-------QVGVSNLQFNSVHGSRLSTNGAFIRPIRGRRSNLVVRPNSRVTRVMINRYS 264

Query: 667 NVATGVEYVNSKGETVRVT-ANKEVILTAGAIANAQLLLLSGIGPKAHLDEVKI 719
              TGVEY  SK  T+++  A KEVI++AGA  + +LL+LSG+GP  HL E  I
Sbjct: 265 KRVTGVEYFCSKTSTLKMVYAKKEVIISAGAFDSPKLLMLSGVGPAEHLREAGI 318

Source: Nasonia vitripennis

Species: Nasonia vitripennis

Genus: Nasonia

Family: Pteromalidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

>gi|156551708|ref|XP_001600419.1| PREDICTED: glucose dehydrogenase [acceptor]-like [Nasonia vitripennis]

 Score =  200 bits (508), Expect = 3e-48,   Method: Compositional matrix adjust.
 Identities = 120/288 (41%), Positives = 173/288 (60%), Gaps = 8/288 (2%)

Query: 434 FDIIIVGASAAGCVLANRLSEVSSLKVLLIEAGGDTPIHSRIPGMSSVLSLSEFDHAYLA 493
           +D +++G  +AG V+A+RLSE+   KVLL+EAG D    + +P +++ L L++ D  Y  
Sbjct: 57  YDFVVIGGGSAGAVVASRLSEIMHWKVLLLEAGPDENEITDVPSLAAYLQLTKLDWKYKT 116

Query: 494 EPSQFAGLGVRNARIKITAGKGLGGSSAVQNILYQRGTSYDYENFAKLGYNGWGYDETLK 553
           EP+  + L ++  R     GK LGGSS +  +LY RG  +DY+++  LG  GWGYD+ L 
Sbjct: 117 EPNGRSCLAMKGGRCNWPRGKVLGGSSVLNYMLYVRGNRHDYDHWEALGNPGWGYDQALY 176

Query: 554 YFVKSEDYRSVIYNESKAVHGTQGYLPVGLFKNKENNIIREIFETSAQELGYPCPKDMND 613
           YF KSED R+  Y  +   HGT GYL V     +   ++   F  +  E+GY   +D+N 
Sbjct: 177 YFKKSEDNRNP-YLRNSPYHGTGGYLTVQESPWRTPLVV--AFVQAGTEIGYE-NRDING 232

Query: 614 RYVDVGFAELPGMTRYGLRFSAADAYLTPIAGKRTNLYVLKRSKVTKVIINDQNV-ATGV 672
            Y   GF    G  R G R S A A+L P+   R NL+   ++ VT+++IN   + ATGV
Sbjct: 233 EY-QTGFMIAQGTIRRGTRCSTAKAFLRPVR-LRKNLHTAMKAHVTRILINSVTMKATGV 290

Query: 673 EYVNSKGETVRVTANKEVILTAGAIANAQLLLLSGIGPKAHLDEVKIP 720
           E+V   G   +V A KEVIL+AGAI +AQ+L+LSGIGP+ HL E+ IP
Sbjct: 291 EFVRD-GHRQQVRARKEVILSAGAINSAQILMLSGIGPREHLQEMGIP 337

Source: Nasonia vitripennis

Species: Nasonia vitripennis

Genus: Nasonia

Family: Pteromalidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	720
FB|FBgn0030590	703	CG9518 [Drosophila melanogaste	0.383	0.392	0.426	1.8e-48
FB|FBgn0039415	616	CG6142 [Drosophila melanogaste	0.398	0.465	0.4	5.4e-47
FB|FBgn0030598	626	CG9503 [Drosophila melanogaste	0.418	0.480	0.382	1.8e-46
FB|FBgn0030594	646	CG9509 [Drosophila melanogaste	0.405	0.452	0.359	4.4e-45
FB|FBgn0030589	622	CG9519 [Drosophila melanogaste	0.387	0.448	0.400	5e-44
FB|FBgn0030588	621	CG9521 [Drosophila melanogaste	0.387	0.449	0.414	5e-44
FB|FBgn0001112	625	Gld "Glucose dehydrogenase" [D	0.387	0.446	0.385	6.4e-44
FB|FBgn0030593	623	CG9512 [Drosophila melanogaste	0.388	0.449	0.368	6.2e-43
UNIPROTKB|Q47YL1	539	CPS_3434 "Oxidoreductase, GMC	0.379	0.506	0.419	1.4e-41
TIGR_CMR|CPS_3434	539	CPS_3434 "oxidoreductase, GMC	0.379	0.506	0.419	1.4e-41

FB|FBgn0030590 CG9518 [Drosophila melanogaster (taxid:7227)]

 Score = 506 (183.2 bits), Expect = 1.8e-48, P = 1.8e-48
 Identities = 121/284 (42%), Positives = 169/284 (59%)

Query:   434 FDIIIVGASAAGCVLANRLSEVSSLKVLLIEAGGDTPIHSRIPGMSSVLSLSEFDHAYLA 493
             +D I+VG+ +AG V+ANRLSEV   KVLLIEAG D    S +P +++ L LS+ D AY  
Sbjct:    57 YDFIVVGSGSAGAVVANRLSEVRKWKVLLIEAGPDENEISDVPSLAAYLQLSKLDWAYKT 116

Query:   494 EPSQFAGLGVRNARIKITAGKGLGGSSAVQNILYQRGTSYDYENFAKLGYNGWGYDETLK 553
             EPS  A LG++N R     G+ LGGSS +  +LY RG  +DY+++A LG  GW YD  L+
Sbjct:   117 EPSTKACLGMQNNRCNWPRGRVLGGSSVLNYMLYVRGNRHDYDHWASLGNPGWDYDNVLR 176

Query:   554 YFVKSEDYRSVIYNESKAVHGTQGYLPVGLFKNKENNIIREIFETSAQELGYPCPKDMND 613
             YF KSED R+  Y  +   HG  G L V   ++  ++ +   F  +  +LGY   +D+N 
Sbjct:   177 YFKKSEDNRNP-YLANNKYHGRGGLLTVQ--ESPWHSPLVAAFVEAGTQLGYD-NRDING 232

Query:   614 RYVDVGFAELPGMTRYGLRFSAADAYLTPIAGKRTNLYVLKRSKVTKVIINDQNV-ATGV 672
                  GF    G  R G R S A A+L PI   R N ++   S VT+VII    + A  V
Sbjct:   233 AK-QAGFMIAQGTIRRGSRCSTAKAFLRPIR-MRKNFHLSMNSHVTRVIIEPGTMRAQAV 290

Query:   673 EYVNSKGETVRVTANKEVILTAGAIANAQLLLLSGIGPKAHLDE 716
             E+V   G+  R+ A +EVI++AGAI   QL++LSG+GP+ HL++
Sbjct:   291 EFVKH-GKVYRIAARREVIISAGAINTPQLMMLSGLGPRKHLEK 333

GO:0008812 "choline dehydrogenase activity" evidence=ISS

GO:0006066 "alcohol metabolic process" evidence=IEA

GO:0055114 "oxidation-reduction process" evidence=IEA

GO:0050660 "flavin adenine dinucleotide binding" evidence=IEA

GO:0046331 "lateral inhibition" evidence=IMP

FB|FBgn0039415 CG6142 [Drosophila melanogaster (taxid:7227)]

 Score = 492 (178.3 bits), Expect = 5.4e-47, P = 5.4e-47
 Identities = 120/300 (40%), Positives = 176/300 (58%)

Query:   422 PDMTPYVKSGDCFDIIIVGASAAGCVLANRLSEVSSLKVLLIEAGGDTPIHSRIPGMSSV 481
             PD T ++     +D IIVGA +AGCV+ANRLSE+SS  VLL+EAG      S +P  +++
Sbjct:    39 PDTTRFLPE---YDFIIVGAGSAGCVMANRLSEISSASVLLLEAGDQETFISDVPLTAAL 95

Query:   482 LSLSEFDHAYLAEPSQFAGLGVRNARIKITAGKGLGGSSAVQNILYQRGTSYDYENFAKL 541
               ++ ++  Y AEP++ A  G++        G+G+GG+S +  +LY RG   DY+ +A  
Sbjct:    96 TQMTRYNWGYKAEPTEHACQGLKGGVCNWPKGRGVGGTSLINFMLYTRGHRRDYDEWAAA 155

Query:   542 GYNGWGYDETLKYFVKSEDYRSVIYNESKA-VHGTQGYLPVGLFKNKENNIIREIFETSA 600
               +GW YDE L YF KSE  R  I    K+  HG  G L V  + +  + +++  F  S 
Sbjct:   156 NNSGWSYDELLPYFRKSE--RIGIPELYKSPYHGRNGQLDVQ-YTDYRSQLLKA-FLKSG 211

Query:   601 QELGYPCPKDMNDRYVDVGFAELPGMTRYGLRFSAADAYLTPIAGKRTNLYVLKRSKVTK 660
             +E+GY    D N  ++ +GFA      R G R S + A++ P+  ++ NL++  +S VT+
Sbjct:   212 REMGYEIT-DPNGEHL-MGFARSQATIRNGRRCSTSKAFIQPVVNRK-NLHISMKSWVTR 268

Query:   661 VIIND-QNVATGVEYVNSKGETVRVTANKEVILTAGAIANAQLLLLSGIGPKAHLDEVKI 719
             +II+     ATGVE+V  +   V V A KEVIL+AG IA+ QLL+LSGIGP  HL E  I
Sbjct:   269 LIIDPITKTATGVEFVKQRQRYV-VRARKEVILSAGTIASPQLLMLSGIGPAEHLREHNI 327

GO:0006066 "alcohol metabolic process" evidence=IEA

GO:0050660 "flavin adenine dinucleotide binding" evidence=IEA

GO:0008812 "choline dehydrogenase activity" evidence=IEA

GO:0055114 "oxidation-reduction process" evidence=IEA

FB|FBgn0030598 CG9503 [Drosophila melanogaster (taxid:7227)]

 Score = 487 (176.5 bits), Expect = 1.8e-46, P = 1.8e-46
 Identities = 120/314 (38%), Positives = 177/314 (56%)

Query:   412 YNIYRSVIYPPDMTPYVKSGDC----FDIIIVGASAAGCVLANRLSEVSSLKVLLIEAGG 467
             Y  Y  +I  P+  P    GD     +D I++GA +AG V+ANRL+EV +  VLL+EAGG
Sbjct:    35 YFQYEEII-DPESKPSDVGGDDILDHYDFIVIGAGSAGAVVANRLTEVENWNVLLLEAGG 93

Query:   468 DTPIHSRIPGMSSVLSLSEFDHAYLAEPSQFAGLGVRNARIKITAGKGLGGSSAVQNILY 527
             D    + +P M+  L LS+ D  Y  EPS  + L ++  R     GK LGGSS +  +LY
Sbjct:    94 DETELTDVPLMAGYLQLSKIDWQYKTEPSGTSCLAMQGGRCNWPRGKVLGGSSVLNYMLY 153

Query:   528 QRGTSYDYENFAKLGYNGWGYDETLKYFVKSEDYRSVIYNESKAVHGTQGYLPVGLFKNK 587
              RG+ +DY+N+  +G   W Y + L YF KSED  +  Y  +   H T GYL VG  +  
Sbjct:   154 LRGSKHDYDNWEAMGNPSWSYRDALYYFKKSEDNTNQ-YLANTPYHATGGYLTVG--EAP 210

Query:   588 ENNIIREIFETSAQELGYPCPKDMNDRYVDVGFAELPGMTRYGLRFSAADAYLTPIAGKR 647
              +  +   F  +  E+GY   +D+N   +  GF    G TR G R S + A+L P A  R
Sbjct:   211 YHTPLAASFVEAGVEMGYE-NRDLNGEKM-TGFMIAQGTTRRGSRCSTSKAFLRP-ARLR 267

Query:   648 TNLYVLKRSKVTKVIIND-QNVATGVEYVNSKGETVRVTANKEVILTAGAIANAQLLLLS 706
              NL++   S VT+++I+    +A GVE+V  + +   V A KEV+L+ G++ + QLL+LS
Sbjct:   268 PNLHISMNSHVTRIMIDPVTKLAFGVEFVKDQ-KLYHVRATKEVVLSGGSVNSPQLLMLS 326

Query:   707 GIGPKAHLDEVKIP 720
             G+GP+  L + +IP
Sbjct:   327 GVGPRKELAKHRIP 340

GO:0050660 "flavin adenine dinucleotide binding" evidence=IEA

GO:0055114 "oxidation-reduction process" evidence=IEA

GO:0006066 "alcohol metabolic process" evidence=IEA

GO:0008812 "choline dehydrogenase activity" evidence=IEA

FB|FBgn0030594 CG9509 [Drosophila melanogaster (taxid:7227)]

 Score = 474 (171.9 bits), Expect = 4.4e-45, P = 4.4e-45
 Identities = 110/306 (35%), Positives = 171/306 (55%)

Query:   418 VIYPPDMTPYVKSGDC---FDIIIVGASAAGCVLANRLSEVSSLKVLLIEAGGDTPIHSR 474
             ++ P    P    GD    +D +++GA +AG V+A+RLSE    +VL++EAGGD P+ S 
Sbjct:    50 LVSPASQWPVDYVGDLSQPYDFVVIGAGSAGSVVASRLSENPDWRVLVLEAGGDPPVESE 109

Query:   475 IPGMSSVLSLSEFDHAYLAEPSQFAGLGVRNARIKITAGKGLGGSSAVQNILYQRGTSYD 534
             +P +   L  + F   Y  EPS  A   +++ R     GK LGGS  V  +LY RG   D
Sbjct:   110 LPALFFGLQHTNFTWNYFTEPSDEACQAMKDGRCYWPRGKMLGGSGGVNAMLYVRGNRRD 169

Query:   535 YENFAKLGYNGWGYDETLKYFVKSEDYRSVIYNESKAVHGTQGYLPVGLFKNKENNIIRE 594
             ++ +A +G  GW YD+ + +F KS      +  +  A H  +GY+ +  F+ K+N+I + 
Sbjct:   170 FDGWAAMGSTGWSYDQVMPFFEKS------VTPQGNATH-PKGYVTLKPFERKDNDIHQM 222

Query:   595 IFETSAQELGYPCPKDMNDRYVDVGFAELPGMTRYGLRFSAADAYLTPIAGKRTNLYVLK 654
             I +   +ELG P  +   +   D G++ +PG  R G R S    YL  ++  R NL+V+K
Sbjct:   223 IID-GGRELGQPYVERFQEGS-DTGYSHVPGTVRQGQRMSTGKGYLGAVSKSRPNLHVVK 280

Query:   655 RSKVTKVIINDQNVATGVEYVNSKGETVRVTANKEVILTAGAIANAQLLLLSGIGPKAHL 714
              + VTK+ ++ + V   V++  + G T RV   K+V+++AGAI +  LLL SGIGP  HL
Sbjct:   281 NALVTKLDLDGETVKE-VKFERA-GVTHRVKVTKDVVISAGAIDSPALLLRSGIGPSKHL 338

Query:   715 DEVKIP 720
              E+ IP
Sbjct:   339 KELGIP 344

GO:0008812 "choline dehydrogenase activity" evidence=ISS

GO:0007498 "mesoderm development" evidence=IEP

GO:0050660 "flavin adenine dinucleotide binding" evidence=IEA

GO:0055114 "oxidation-reduction process" evidence=IEA

GO:0006066 "alcohol metabolic process" evidence=IEA

FB|FBgn0030589 CG9519 [Drosophila melanogaster (taxid:7227)]

 Score = 464 (168.4 bits), Expect = 5.0e-44, P = 5.0e-44
 Identities = 115/287 (40%), Positives = 160/287 (55%)

Query:   434 FDIIIVGASAAGCVLANRLSEVSSLKVLLIEAGGDTPIHSRIPGMSSVLSLSEFDHAYLA 493
             +D I+VGA  AGC LA RLSE    +VLL+EAGG       IP ++ +L L E +  Y  
Sbjct:    62 YDFIVVGAGTAGCALAARLSENPRWRVLLLEAGGPENYAMDIPIVAHLLQLGEINWKYKT 121

Query:   494 EPSQFAGLGVRNARIKITAGKGLGGSSAVQNILYQRGTSYDYENFAKLGYNGWGYDETLK 553
             EPS    L + N R     GK +GGSS +  ++Y RG   DY+ +A+LG  GW Y+E L 
Sbjct:   122 EPSNSYCLAMNNNRCNWPRGKVMGGSSVLNYMMYTRGNRRDYDRWARLGNPGWSYEEVLP 181

Query:   554 YFVKSEDYRSVIYNESKAVHGTQGYLPVGLFKNKENNIIREIFETSAQELGYPCPKDMND 613
             YF K E   SV+ +  + + G  G  PV +  ++    I + F  + Q+ G P      D
Sbjct:   182 YFKKYEG--SVVPDADENLVGRNG--PVKVSYSETRTRIADAFVGATQDAGLPRGDYNGD 237

Query:   614 RYVDVGFAELPGMTRYGLRFSAADAYLTPIAGKRTNLYVLKRSKVTKVIINDQNV-ATGV 672
             + + V +  L        R+S+  AYL PI GKR NL+V K + VTK++I+ Q   A G+
Sbjct:   238 KQIRVSY--LQANIYNETRWSSNRAYLYPIKGKRRNLHVKKNALVTKILIDPQTKSAFGI 295

Query:   673 EYVNSKGETVRVTANKEVILTAGAIANAQLLLLSGIGPKAHLDEVKI 719
               V   G+  ++ A KEVIL+AGAI   QLL+LSG+GP  HL E+ I
Sbjct:   296 -IVKMDGKMQKILARKEVILSAGAINTPQLLMLSGVGPAKHLREMGI 341

GO:0008812 "choline dehydrogenase activity" evidence=ISS

GO:0055114 "oxidation-reduction process" evidence=IEA

GO:0006066 "alcohol metabolic process" evidence=IEA

GO:0050660 "flavin adenine dinucleotide binding" evidence=IEA

FB|FBgn0030588 CG9521 [Drosophila melanogaster (taxid:7227)]

 Score = 464 (168.4 bits), Expect = 5.0e-44, P = 5.0e-44
 Identities = 119/287 (41%), Positives = 162/287 (56%)

Query:   434 FDIIIVGASAAGCVLANRLSEVSSLKVLLIEAGGDTPIHSRIPGMSSVLSLSEFDHAYLA 493
             +D I+VGA  AGC LA RLSE    +VLL+EAGG   +   +P ++  L L E +  Y  
Sbjct:    60 YDFIVVGAGTAGCALAARLSENPQWRVLLLEAGGPERLVMDVPIVAHFLQLGEMNWKYRT 119

Query:   494 EPSQFAGLGVRNARIKITAGKGLGGSSAVQNILYQRGTSYDYENFAKLGYNGWGYDETLK 553
             +PS  A L + N R     GK +GGSS +  ++Y RG   DY+ +  LG  GW + + L 
Sbjct:   120 QPSDHACLAMNNNRCNWPRGKVMGGSSVLNYMMYTRGNRRDYDRWEALGNPGWSFKDVLP 179

Query:   554 YFVKSEDYRSVIYNESKAVHGTQGYLPVGLFKNKENNIIREIFETSAQELGYPCPKDMND 613
             YF K E   SV   E   V G  G + V  + N  + I  E F  +AQ+ G    +D N 
Sbjct:   180 YFKKYEG-SSVPDAEEDYV-GRNGPVKVS-YVNWRSKIA-EAFVDAAQQDGLKY-RDYNG 234

Query:   614 RYVDVGFAELPGMTRYGLRFSAADAYLTPIAGKRTNLYVLKRSKVTKVIINDQN-VATGV 672
             R +  G A L   TR   R+S+  AYL P+ GKR+NL+V K + VTKV+I+ Q   A G+
Sbjct:   235 R-IQNGVAFLHTTTRNSTRWSSNRAYLYPLKGKRSNLHVRKNALVTKVLIDPQTKTAYGI 293

Query:   673 EYVNSKGETVRVTANKEVILTAGAIANAQLLLLSGIGPKAHLDEVKI 719
               V ++G   ++ A KEVI++AGAI   QLL+LSG+GP  HL EV I
Sbjct:   294 -MVQTEGRMQKILARKEVIVSAGAINTPQLLMLSGVGPAKHLREVGI 339

GO:0008812 "choline dehydrogenase activity" evidence=ISS

GO:0055114 "oxidation-reduction process" evidence=IEA

GO:0006066 "alcohol metabolic process" evidence=IEA

GO:0050660 "flavin adenine dinucleotide binding" evidence=IEA

FB|FBgn0001112 Gld "Glucose dehydrogenase" [Drosophila melanogaster (taxid:7227)]

 Score = 463 (168.0 bits), Expect = 6.4e-44, P = 6.4e-44
 Identities = 111/288 (38%), Positives = 161/288 (55%)

Query:   434 FDIIIVGASAAGCVLANRLSEVSSLKVLLIEAGGDTPIHSRIPGMSSVLSLSEFDHAYLA 493
             +D I++G  +AG V+A+RLSEV   KVLLIEAGGD P+ ++IP M      S+ D+ Y  
Sbjct:    65 YDFIVIGGGSAGSVVASRLSEVPQWKVLLIEAGGDEPVGAQIPSMFLNFIGSDIDYRYNT 124

Query:   494 EPSQFAGLGVRNARIKITAGKGLGGSSAVQNILYQRGTSYDYENFAKLGYNGWGYDETLK 553
             EP   A L     R     GK LGG+S +  ++Y RG   DY+++A  G  GW Y++ L 
Sbjct:   125 EPEPMACLSSMEQRCYWPRGKVLGGTSVLNGMMYVRGNREDYDDWAADGNPGWAYNDVLP 184

Query:   554 YFVKSEDYRSVIYNESKAVHGTQGYLPVGLFKNKENNIIREIFETSAQELGYPCPKDMND 613
             +F KSED    +       H   G LPVG F    N  +      + +ELG+    D+N 
Sbjct:   185 FFKKSEDNLD-LDEVGTEYHAKGGLLPVGKFPY--NPPLSYAILKAGEELGFSV-HDLNG 240

Query:   614 RYVDVGFAELPGMTRYGLRFSAADAYLTPIAGKRTNLYVLKRSKVTKVIIND--QNVATG 671
             +    GF       R G+R+S+A A+L P A  R NL++L  +  TK++I+   +NV  G
Sbjct:   241 QN-STGFMIAQMTARNGIRYSSARAFLRP-ARMRNNLHILLNTTATKILIHPHTKNVL-G 297

Query:   672 VEYVNSKGETVRVTANKEVILTAGAIANAQLLLLSGIGPKAHLDEVKI 719
             VE  +  G T ++   KEV+L+AGA+ +  +LLLSG+GPK  L +V +
Sbjct:   298 VEVSDQFGSTRKILVKKEVVLSAGAVNSPHILLLSGVGPKDELQQVNV 345

GO:0004344 "glucose dehydrogenase activity" evidence=NAS;TAS

GO:0006006 "glucose metabolic process" evidence=TAS

GO:0008364 "pupal chitin-based cuticle development" evidence=TAS

GO:0042335 "cuticle development" evidence=NAS

GO:0005576 "extracellular region" evidence=NAS

GO:0046693 "sperm storage" evidence=IMP;TAS

GO:0008812 "choline dehydrogenase activity" evidence=IEA

GO:0006066 "alcohol metabolic process" evidence=IEA

GO:0055114 "oxidation-reduction process" evidence=IEA

GO:0050660 "flavin adenine dinucleotide binding" evidence=IEA

FB|FBgn0030593 CG9512 [Drosophila melanogaster (taxid:7227)]

 Score = 457 (165.9 bits), Expect = 6.2e-43, P = 6.2e-43
 Identities = 106/288 (36%), Positives = 161/288 (55%)

Query:   434 FDIIIVGASAAGCVLANRLSEVSSLKVLLIEAGGDTPIHSRIPGMSSVLSLSEFDHAYLA 493
             +D I++G+  +G V+A RL+EV + KVLL+EAGGD PI +           SE+D  Y +
Sbjct:    58 YDFIVIGSGTSGAVVAGRLAEVKNWKVLLLEAGGDPPIETEFVAWHMATQFSEWDWQYHS 117

Query:   494 EPSQFAGLGVRNARIKITAGKGLGGSSAVQNILYQRGTSYDYENFAKLGYNGWGYDETLK 553
             +P+  A + ++        GK LGG++ +  ++Y RGT  D++++ + G  GWGYDE LK
Sbjct:   118 KPNGRACMAMKGESCHWPRGKMLGGTNGMNAMIYARGTRKDFDDWEERGNPGWGYDEVLK 177

Query:   554 YFVKSEDYRSVIYNESKAVHGTQGYLPVGLFKNKENNIIREIFETSAQELGYPCPKDMND 613
             +F K+ED RS   +     HG  G  P+GL     +N  R       QE+GY    D  +
Sbjct:   178 HFRKAEDLRSTRPDYKPGDHGVGG--PMGLNNYVSDNEFRTTIRAGMQEMGYGSAPDFTE 235

Query:   614 RYVDVGFAELPGMTRYGLRFSAADAYLTPIAGKRT-NLYVLKRSKVTKVIINDQNVATGV 672
                 VG  ++ G    G R + A ++L     K T NL++L+ + V K+ ++  N A  V
Sbjct:   236 GSF-VGQMDILGTQDGGRRITTARSHLK----KNTPNLHILRHAHVKKINLDRNNRAESV 290

Query:   673 EYVNSKGETVRVTANKEVILTAGAIANAQLLLLSGIGPKAHLDEVKIP 720
              +V+   +   V A+KEVI++AGAI + Q+LLLSGIGP  HL  + IP
Sbjct:   291 TFVHRGKKEYTVKASKEVIVSAGAIGSPQILLLSGIGPADHLKSLGIP 338

GO:0008812 "choline dehydrogenase activity" evidence=ISS

GO:0055114 "oxidation-reduction process" evidence=IEA

GO:0006066 "alcohol metabolic process" evidence=IEA

GO:0050660 "flavin adenine dinucleotide binding" evidence=IEA

UNIPROTKB|Q47YL1 CPS_3434 "Oxidoreductase, GMC family" [Colwellia psychrerythraea 34H (taxid:167879)]

 Score = 442 (160.7 bits), Expect = 1.4e-41, P = 1.4e-41
 Identities = 123/293 (41%), Positives = 172/293 (58%)

Query:   429 KSGDC-FDIIIVGASAAGCVLANRLSEVSSLKVLLIEAGGDT-PIHSRIPG-MSSVLSLS 485
             KS D  FD IIVGA +AGCVLANRL+E     V L+EAG D   +  + PG  S+ + L 
Sbjct:     3 KSQDNNFDYIIVGAGSAGCVLANRLTEDGKFNVCLLEAGSDNNSMLVKTPGAFSAFMFLK 62

Query:   486 EFDHAYLAEPSQFAGLGVRNAR-IKITAGKGLGGSSAVQNILYQRGTSYDYENFAKLGYN 544
             +F+ ++ A+P +     +RN   + +  G+GLGGSSA   +LY RG   DY+++A+LG  
Sbjct:    63 KFNWSFDAKPRK----DIRNGEPLFVPRGRGLGGSSATNAMLYIRGQKQDYDHWAELGNE 118

Query:   545 GWGYDETLKYFVKSEDYRSVIYNESKAVHGTQGYLPVGLFKNKENNIIREIFETSAQELG 604
             GW +D+ L YF KSE        ES+ +HG  G L V   +     I +   E S Q+ G
Sbjct:   119 GWSFDDILPYFKKSETNSR---GESE-LHGGAGPLQV-TDRPAFYEISKRYIEAS-QQAG 172

Query:   605 YPCPKDMNDRYVD-VGFAELPGMTRYGLRFSAADAYLTPIAGKRTNLYVLKRSKVTKVII 663
             +    D N    + VG+ +     + G R SAA AYL PI   R NL VL  ++V+KV++
Sbjct:   173 FKVTDDFNGSDQEGVGYYQCT--IKDGKRCSAAHAYLLPILS-RPNLTVLTYAQVSKVLL 229

Query:   664 NDQNVATGVEYVNSKGETVRVTANKEVILTAGAIANAQLLLLSGIGPKAHLDE 716
              D+  A GV+ V  KGE   ++ANKEVIL+ G+IA+ QLL+LSGIG K+ L +
Sbjct:   230 KDKQ-AYGVD-VYVKGEKRTLSANKEVILSGGSIASPQLLMLSGIGDKSELTQ 280

GO:0008150 "biological_process" evidence=ND

TIGR_CMR|CPS_3434 CPS_3434 "oxidoreductase, GMC family" [Colwellia psychrerythraea 34H (taxid:167879)]

 Score = 442 (160.7 bits), Expect = 1.4e-41, P = 1.4e-41
 Identities = 123/293 (41%), Positives = 172/293 (58%)

Query:   429 KSGDC-FDIIIVGASAAGCVLANRLSEVSSLKVLLIEAGGDT-PIHSRIPG-MSSVLSLS 485
             KS D  FD IIVGA +AGCVLANRL+E     V L+EAG D   +  + PG  S+ + L 
Sbjct:     3 KSQDNNFDYIIVGAGSAGCVLANRLTEDGKFNVCLLEAGSDNNSMLVKTPGAFSAFMFLK 62

Query:   486 EFDHAYLAEPSQFAGLGVRNAR-IKITAGKGLGGSSAVQNILYQRGTSYDYENFAKLGYN 544
             +F+ ++ A+P +     +RN   + +  G+GLGGSSA   +LY RG   DY+++A+LG  
Sbjct:    63 KFNWSFDAKPRK----DIRNGEPLFVPRGRGLGGSSATNAMLYIRGQKQDYDHWAELGNE 118

Query:   545 GWGYDETLKYFVKSEDYRSVIYNESKAVHGTQGYLPVGLFKNKENNIIREIFETSAQELG 604
             GW +D+ L YF KSE        ES+ +HG  G L V   +     I +   E S Q+ G
Sbjct:   119 GWSFDDILPYFKKSETNSR---GESE-LHGGAGPLQV-TDRPAFYEISKRYIEAS-QQAG 172

Query:   605 YPCPKDMNDRYVD-VGFAELPGMTRYGLRFSAADAYLTPIAGKRTNLYVLKRSKVTKVII 663
             +    D N    + VG+ +     + G R SAA AYL PI   R NL VL  ++V+KV++
Sbjct:   173 FKVTDDFNGSDQEGVGYYQCT--IKDGKRCSAAHAYLLPILS-RPNLTVLTYAQVSKVLL 229

Query:   664 NDQNVATGVEYVNSKGETVRVTANKEVILTAGAIANAQLLLLSGIGPKAHLDE 716
              D+  A GV+ V  KGE   ++ANKEVIL+ G+IA+ QLL+LSGIG K+ L +
Sbjct:   230 KDKQ-AYGVD-VYVKGEKRTLSANKEVILSGGSIASPQLLMLSGIGDKSELTQ 280

GO:0008150 "biological_process" evidence=ND

GO:0016491 "oxidoreductase activity" evidence=ISS

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database

ID	Length	Definition	E-value
Query	720
PRK02106	560	PRK02106, PRK02106, choline dehydrogenase; Validat	1e-59
COG2303	542	COG2303, BetA, Choline dehydrogenase and related f	7e-55
TIGR01810	532	TIGR01810, betA, choline dehydrogenase	4e-48
TIGR03970	487	TIGR03970, Rv0697, dehydrogenase, Rv0697 family	5e-36
pfam00732	218	pfam00732, GMC_oxred_N, GMC oxidoreductase	4e-30
PLN02785	587	PLN02785, PLN02785, Protein HOTHEAD	3e-17
PTZ00449	943	PTZ00449, PTZ00449, 104 kDa microneme/rhoptry anti	2e-06
PTZ00449	943	PTZ00449, PTZ00449, 104 kDa microneme/rhoptry anti	2e-05
pfam07992	283	pfam07992, Pyr_redox_2, Pyridine nucleotide-disulp	3e-05
PTZ00449	943	PTZ00449, PTZ00449, 104 kDa microneme/rhoptry anti	1e-04
PRK06370	463	PRK06370, PRK06370, mercuric reductase; Validated	1e-04
COG0644	396	COG0644, FixC, Dehydrogenases (flavoproteins) [Ene	2e-04
pfam05834	374	pfam05834, Lycopene_cycl, Lycopene cyclase protein	0.003
PTZ00441	576	PTZ00441, PTZ00441, sporozoite surface protein 2 (	0.003
TIGR01988	387	TIGR01988, Ubi-OHases, Ubiquinone biosynthesis hyd	0.003
COG0654	387	COG0654, UbiH, 2-polyprenyl-6-methoxyphenol hydrox	0.004

>gnl|CDD|235000 PRK02106, PRK02106, choline dehydrogenase; Validated

 Score =  210 bits (536), Expect = 1e-59
 Identities = 115/293 (39%), Positives = 154/293 (52%), Gaps = 20/293 (6%)

Query: 434 FDIIIVGASAAGCVLANRLSEVSSLKVLLIEAGG-DTPIHSRIPGMSSVLSL----SEFD 488
           +D II+GA +AGCVLANRLSE   + VLL+EAGG D      I  M + L+       ++
Sbjct: 6   YDYIIIGAGSAGCVLANRLSEDPDVSVLLLEAGGPDYRWDFFIQ-MPAALAFPLQGKRYN 64

Query: 489 HAYLAEPSQFAGLGVRNARIKITAGKGLGGSSAVQNILYQRGTSYDYENFAKL-GYNGWG 547
            AY  EP         N R++   GK LGGSS++  ++Y RG + DY+N+A+L G  GW 
Sbjct: 65  WAYETEPEPHMN----NRRMECPRGKVLGGSSSINGMVYIRGNAMDYDNWAELPGLEGWS 120

Query: 548 YDETLKYFVKSEDYRSVIYNESKAVHGTQGYLPVGLFKNKENNIIREIFETSAQELGYPC 607
           Y + L YF K+E              G  G L V   K   N + +   E +  + GYP 
Sbjct: 121 YADCLPYFKKAETR----DGGEDDYRGGDGPLSVTRGKPGTNPLFQAFVE-AGVQAGYPR 175

Query: 608 PKDMNDRYVDVGFAELPGMTRYGLRFSAADAYLTPIAGKRTNLYVLKRSKVTKVIINDQN 667
             D+N  Y   GF  +      G R+SAA AYL P A KR NL ++  +   +++  +  
Sbjct: 176 TDDLNG-YQQEGFGPMDRTVTNGRRWSAARAYLDP-ALKRPNLTIVTHALTDRILF-EGK 232

Query: 668 VATGVEYVNSKGETVRVTANKEVILTAGAIANAQLLLLSGIGPKAHLDEVKIP 720
            A GVEY    G      A +EVIL+AGAI + QLL LSGIGP  HL E+ IP
Sbjct: 233 RAVGVEYER-GGGRETARARREVILSAGAINSPQLLQLSGIGPAEHLKELGIP 284

Length = 560

>gnl|CDD|225186 COG2303, BetA, Choline dehydrogenase and related flavoproteins [Amino acid transport and metabolism]

 Score =  196 bits (501), Expect = 7e-55
 Identities = 103/290 (35%), Positives = 152/290 (52%), Gaps = 12/290 (4%)

Query: 434 FDIIIVGASAAGCVLANRLSEVSSLKVLLIEAGG-DTPIHSRIPGMSSVLSLSEFDHAYL 492
           +D +IVG+ +AG VLA RLS+ + L VL++EAGG D     ++P   + L        Y 
Sbjct: 8   YDYVIVGSGSAGSVLAARLSD-AGLSVLVLEAGGPDRRPLIQMPAAYAFL---MNGPRYD 63

Query: 493 AEPSQFAGLGVRNARIKITAGKGLGGSSAVQNILYQRGTSYDYENFAKL-GYNGWGYDET 551
                     +R   +    GK LGGSS++  ++Y RG   D++ +A+  G  GW YD+ 
Sbjct: 64  WGFRTEPEPHLRGRELAWPRGKVLGGSSSINGMVYVRGHPEDFDAWAQESGAPGWPYDDV 123

Query: 552 LKYFVKSEDYRSVIYNESKAVHGTQGYLPVGLFKNKENNIIREIFETSAQELGYPCPKDM 611
           L YF ++ED   V   + +  HG  G  P+ +   +  N I   F  + ++LG+P   D 
Sbjct: 124 LPYFKRAEDLLGVGGQDLRTWHGGGG--PLPVSPPRSPNPIARAFIEAGEQLGFPTTPDP 181

Query: 612 NDRYVDVGFAELPGMTRYGLRFSAADAYLTPIAGKRTNLYVLKRSKVTKVIINDQNVATG 671
           N    + GF         G R+SAA AYL P   KR NL +L  ++V ++++ + + A G
Sbjct: 182 NGADQE-GFGPYCVTICNGRRWSAARAYLKPAL-KRPNLTLLTGARVRRILL-EGDRAVG 238

Query: 672 VEYVNSKGETVRVT-ANKEVILTAGAIANAQLLLLSGIGPKAHLDEVKIP 720
           VE     G T+    A +EV+L AGAI + +LLLLSGIGP  HL E  I 
Sbjct: 239 VEVEIGDGGTIETAVAAREVVLAAGAINSPKLLLLSGIGPADHLLEHGID 288

Length = 542

>gnl|CDD|233581 TIGR01810, betA, choline dehydrogenase

 Score =  177 bits (451), Expect = 4e-48
 Identities = 112/291 (38%), Positives = 148/291 (50%), Gaps = 19/291 (6%)

Query: 435 DIIIVGASAAGCVLANRLSEVSSLKVLLIEAGG-DTPIHSRI---PGMSSVLSLSEFDHA 490
           D II+G  +AG VLA RLSE  S  VL++EAGG D P    I     ++       ++  
Sbjct: 1   DYIIIGGGSAGSVLAGRLSEDVSNSVLVLEAGGSDYPWDLLIQMPAALAYPAGNKRYNWI 60

Query: 491 YLAEPSQFAGLGVRNARIKITAGKGLGGSSAVQNILYQRGTSYDYENFAK-LGYNGWGYD 549
           Y  EP       + N R+    GK LGGSS++  ++YQRG   DYE +AK  G   W Y 
Sbjct: 61  YETEPEPH----MNNRRVGHARGKVLGGSSSINGMIYQRGNPMDYEKWAKPEGMESWDYA 116

Query: 550 ETLKYFVKSEDYRSVIYNESKAVHGTQGYLPVGLFKNKENNIIREIFETSAQELGYPCPK 609
           + L Y+ + E      +   K   G  G  P+ + +   +N + + F  +  E GY    
Sbjct: 117 DCLPYYKRLE----TTFGGEKPYRGHDG--PIKVRRGPADNPLFQAFIEAGVEAGYNKTP 170

Query: 610 DMNDRYVDVGFAELPGMTRYGLRFSAADAYLTPIAGKRTNLYVLKRSKVTKVIINDQNVA 669
           D+N  +   GF  +      G R SAA AYL P A KR NL V  R+ VTK+   + N A
Sbjct: 171 DVNG-FRQEGFGPMDSTVHNGRRVSAARAYLHP-AMKRPNLEVQTRAFVTKINF-EGNRA 227

Query: 670 TGVEYVNSKGETVRVTANKEVILTAGAIANAQLLLLSGIGPKAHLDEVKIP 720
           TGVE+    G      ANKEVIL+AGAI + QLL LSGIG   HL E+ I 
Sbjct: 228 TGVEFKKG-GRKEHTEANKEVILSAGAINSPQLLQLSGIGDAEHLRELGIE 277

Choline dehydrogenase catalyzes the conversion of exogenously supplied choline into the intermediate glycine betaine aldehyde, as part of a two-step oxidative reaction leading to the formation of osmoprotectant betaine. This enzymatic system can be found in both gram-positive and gram-negative bacteria. As in Escherichia coli , Staphylococcus xylosus , and Sinorhizobium meliloti, this enzyme is found associated in a transciptionally co-induced gene cluster with betaine aldehyde dehydrogenase, the second catalytic enzyme in this reaction. Other gram-positive organisms have been shown to employ a different enzymatic system, utlizing a soluable choline oxidase or type III alcohol dehydrogenase instead of choline dehydrogenase. This enzyme is a member of the GMC oxidoreductase family (pfam00732 and pfam05199), sharing a common evoluntionary origin and enzymatic reaction with alcohol dehydrogenase. Outgrouping from this model, Caulobacter crescentus shares sequence homology with choline dehydrogenase, yet other genes participating in this enzymatic reaction have not currently been identified [Cellular processes, Adaptations to atypical conditions]. Length = 532

>gnl|CDD|234421 TIGR03970, Rv0697, dehydrogenase, Rv0697 family

 Score =  142 bits (359), Expect = 5e-36
 Identities = 90/294 (30%), Positives = 129/294 (43%), Gaps = 26/294 (8%)

Query: 435 DIIIVGASAAGCVLANRLSEVSSLKVLLIEAG------GDTPIHSRIPGMSSVLSLSEFD 488
           D+++VG  +AGCV+A RLSE  S  V ++EAG         P          +   S   
Sbjct: 2   DVLVVGGGSAGCVVAARLSEDPSCTVTVLEAGPGYRDPSRLPAQLTDGLRLPIGPASPVV 61

Query: 489 HAYLAEPSQFAGLGVRNARIKITAGKGLGGSSAVQNILYQRGTSYDYENFAKLGYNGWGY 548
             Y     +      R +   I  G+ LGGS AV    + R    D++ +      GW +
Sbjct: 62  WRY---GVELTDGPRRAS--AIVRGRVLGGSGAVNGGYFCRALPADFDAWPI---PGWSW 113

Query: 549 DETLKYFVKSEDYRSVIYNESKAVHGTQGYLPVGLFKNKENNIIREIFETSAQELGYPCP 608
           D+ L +F   E            +HGT G +PV   +  E + I   F  +A   G+   
Sbjct: 114 DDVLPHFRAIETDLDF----DGPLHGTAGPIPVR--RTAELDGISAAFVAAALGAGFGWI 167

Query: 609 KDMNDRYVDVGF--AELPGMTRYGLRFSAADAYLTPIAGKRTNLYVLKRSKVTKVIINDQ 666
            D+N    D       +P     G R S A AYL P A KR NL V   ++V +++ +  
Sbjct: 168 ADLNGSGPDAPTGVGAVPLNVDGGRRVSTAVAYLLP-ALKRPNLTVEADTRVVRILFS-G 225

Query: 667 NVATGVEYVNSKGETVRVTANKEVILTAGAIANAQLLLLSGIGPKAHLDEVKIP 720
             A GVE +   G    + A++ V+L AGA+ +A LLLLSGIGP   L    I 
Sbjct: 226 TRAVGVEVL-GDGGPRTLRADR-VVLCAGAVESAHLLLLSGIGPAEQLRAAGIA 277

This model describes a set of dehydrogenases belonging to the glucose-methanol-choline oxidoreductase (GMC oxidoreductase) family. Members of the present family are restricted to Actinobacterial genome contexts containing also members of families TIGR03962 and TIGR03969 (the mycofactocin system), and are proposed to be uniform in function. Length = 487

>gnl|CDD|216089 pfam00732, GMC_oxred_N, GMC oxidoreductase

 Score =  118 bits (297), Expect = 4e-30
 Identities = 68/217 (31%), Positives = 99/217 (45%), Gaps = 29/217 (13%)

Query: 503 VRNARIKITAGKGLGGSSAVQNILYQRGTSYDYENFAKL-GYNGWGYDETLKYFVKSEDY 561
           V   R+ + AG  +GG S+V      R  +   + +A   G  GWGYD+ L Y  K E  
Sbjct: 14  VNGRRMILPAGSTVGGGSSVNWSACIRTPAAVLDEWASEFGLEGWGYDDYLPYMDKVE-- 71

Query: 562 RSVIYNESKAVHGTQGYLPVGLFKNKENNIIREIFETSAQELGYP---CPKDMNDRYVDV 618
                       G  G    G+ ++  N  + +    +A+ELGYP    P++ N  +   
Sbjct: 72  ------------GPLGVTTKGIEESPLNQALLK----AAEELGYPVEAVPRNSNGCH-YC 114

Query: 619 GFAELPGMTRYGLRFSAADAYLTPIAGKRTNLYVLKRSKVTKVIINDQN-VATGVEYVNS 677
           GF  L      G + S A  +L P   +  NL +L  +K  K+II  +   A GVE  + 
Sbjct: 115 GFCGLG--CPTGAKQSTARTWLRPALER--NLRILTGAKAEKIIILGRGGRAVGVEARDG 170

Query: 678 KGETVR-VTANKEVILTAGAIANAQLLLLSGIGPKAH 713
            G   R +TA KEV++ AGA+    LLL SG+G   H
Sbjct: 171 GGGIKRLITAAKEVVVAAGALNTPPLLLRSGLGKNPH 207

This family of proteins bind FAD as a cofactor. Length = 218

>gnl|CDD|215420 PLN02785, PLN02785, Protein HOTHEAD

 Score = 85.2 bits (211), Expect = 3e-17
 Identities = 88/316 (27%), Positives = 129/316 (40%), Gaps = 88/316 (27%)

Query: 434 FDIIIVGASAAGCVLANRLSEVSSLKVLLIEAGGDTPIHSRIPGMSSVLSLSEFDHAYLA 493
           +D I+VG   AGC LA  LS+  +  VLL+E GG       +P  ++ +S  E  H  LA
Sbjct: 56  YDYIVVGGGTAGCPLAATLSQ--NFSVLLLERGG-------VPFGNANVSFLENFHIGLA 106

Query: 494 E-----PSQF--AGLGVRNARIKITAGKGLGGSSAVQNILYQRGTSYDYENFAKLGYNGW 546
           +      SQ   +  GV NAR ++     LGG + +    Y R ++     F +      
Sbjct: 107 DTSPTSASQAFISTDGVINARARV-----LGGGTCINAGFYSRAST----RFIQKA---- 153

Query: 547 GYDETLKYFVKSEDYRSVIYNESKAVHGTQGYLPVGLFKNKENNIIREIFETSAQELGYP 606
           G+D  L     +E Y  V   E + VH                                P
Sbjct: 154 GWDAKLV----NESYPWV---ERQIVH---------------------------WPKVAP 179

Query: 607 CPKDMNDRYVDVGFAELPGMT---------------RYGLRFSAADAYLTPIAGKRTNLY 651
               + D  ++VG +   G T                +G R +AA+      AG    L 
Sbjct: 180 WQAALRDSLLEVGVSPFNGFTYDHVYGTKVGGTIFDEFGRRHTAAELL---AAGNPNKLR 236

Query: 652 VLKRSKVTKVIINDQNV---ATGVEYVNSKGETVRVTANK----EVILTAGAIANAQLLL 704
           VL  + V K++ +       ATGV + +  G   +   +     E+IL+AGAI + Q+LL
Sbjct: 237 VLLHATVQKIVFDTSGKRPRATGVIFKDENGNQHQAFLSNNKGSEIILSAGAIGSPQMLL 296

Query: 705 LSGIGPKAHLDEVKIP 720
           LSGIGPK  L + KIP
Sbjct: 297 LSGIGPKKELKKHKIP 312

Length = 587

>gnl|CDD|185628 PTZ00449, PTZ00449, 104 kDa microneme/rhoptry antigen; Provisional

 Score = 50.8 bits (121), Expect = 2e-06
 Identities = 51/247 (20%), Positives = 82/247 (33%), Gaps = 38/247 (15%)

Query: 136 PFNPYNPSSVFNPKNIDSVFNPRNPDSPYYNQYQFLYSPLSPYNPRSLFSSQNPLSPLSP 195
           P  P +P    +P+       PR+   P          P SP  P  L   ++P  P SP
Sbjct: 579 PEFPKDPKHPKDPEEPKKPKRPRSAQRPT--------RPKSPKLPELLDIPKSPKRPESP 630

Query: 196 LNANSPYNPRNQISYYNIENPKSPYNIHNPESPLYSDSPYYYRNLPLYNPVETELIDQYS 255
            +   P  P+   S    E PK   +   P+SP            P     + +  D Y 
Sbjct: 631 KSPKRPPPPQRPSSPERPEGPKIIKSPKPPKSP----------KPPFDPKFKEKFYDDYL 680

Query: 256 TSVYNNPDSPLSI---NSPHSVLNPYNLDSILNPFNVKSPLSPENPASPFNPYNP--EPS 310
            +   + ++  ++    S  S+L     ++   PF    PL P+ P     P+ P  +P 
Sbjct: 681 DAAAKSKETKTTVVLDESFESILKETLPETPGTPFTTPRPLPPKLPRDEEFPFEPIGDPD 740

Query: 311 IFDSHNIYSFFSPHNPYSPFNPYNIDSPF---------------NSDNPDSPFRNYPQYS 355
                +I  F  P    + F+    D+P                 +  PD   +     S
Sbjct: 741 AEQPDDIEFFTPPEEERTFFHETPADTPLPDILAEEFKEEDIHAETGEPDEAMKRPDSPS 800

Query: 356 RYNPKNP 362
            +  K P
Sbjct: 801 EHEDKPP 807

Length = 943

>gnl|CDD|185628 PTZ00449, PTZ00449, 104 kDa microneme/rhoptry antigen; Provisional

 Score = 47.8 bits (113), Expect = 2e-05
 Identities = 46/194 (23%), Positives = 72/194 (37%), Gaps = 11/194 (5%)

Query: 214 ENPKSPYNIHNPESPLYSDSPYY-YRNLPLYNPVETELIDQYSTSVYNNPDSPLSINSPH 272
           E PK P +  +PE P     P    R     +P   EL+D     +  +P  P S  SP 
Sbjct: 580 EFPKDPKHPKDPEEPKKPKRPRSAQRPTRPKSPKLPELLD-----IPKSPKRPESPKSPK 634

Query: 273 SVLNPYNLDSILNPFNVKSPLSPENPASPFNPYNP--EPSIFDSHNIYSFFSPHNPYSPF 330
               P    S   P   K   SP+ P SP  P++P  +   +D +   +  S     +  
Sbjct: 635 RPPPPQRPSSPERPEGPKIIKSPKPPKSPKPPFDPKFKEKFYDDYLDAAAKSKETKTTVV 694

Query: 331 NPYNIDSPFNSDNPDSPFRNYPQYSRYNPK---NPESPFSPQNEDSIYNPENPNSPYNPF 387
              + +S      P++P   +       PK   + E PF P  +     P++      P 
Sbjct: 695 LDESFESILKETLPETPGTPFTTPRPLPPKLPRDEEFPFEPIGDPDAEQPDDIEFFTPPE 754

Query: 388 NENSLYHPGNPDSP 401
            E + +H    D+P
Sbjct: 755 EERTFFHETPADTP 768

Length = 943

>gnl|CDD|219686 pfam07992, Pyr_redox_2, Pyridine nucleotide-disulphide oxidoreductase

 Score = 46.2 bits (110), Expect = 3e-05
 Identities = 21/80 (26%), Positives = 32/80 (40%), Gaps = 3/80 (3%)

Query: 435 DIIIVGASAAGCVLANRLSEVSSLKVLLIEAGGDTPIHSRIPGMSSVLSLSEFDHAYLAE 494
           D++I+G   AG   A RL+    LKV LIE  G T  +     +   L L   +   LA 
Sbjct: 1   DVVIIGGGPAGLAAAIRLAR-LGLKVALIEREGGTCYNR--GCLPKKLLLEVAEGLELAI 57

Query: 495 PSQFAGLGVRNARIKITAGK 514
                    +   +++  G 
Sbjct: 58  GLALPEEVYKEFGVEVLLGT 77

This family includes both class I and class II oxidoreductases and also NADH oxidases and peroxidases. This domain is actually a small NADH binding domain within a larger FAD binding domain. Length = 283

>gnl|CDD|185628 PTZ00449, PTZ00449, 104 kDa microneme/rhoptry antigen; Provisional

 Score = 45.1 bits (106), Expect = 1e-04
 Identities = 34/124 (27%), Positives = 47/124 (37%), Gaps = 22/124 (17%)

Query: 286 PFNVKSPLSPENPASPFNPYNPEPSIFDSHNIYSFFSPHNPYSPFNPYNIDSPFNSDNPD 345
           P   K P  P++P  P +P  P+              P +   P  P +   P   D P 
Sbjct: 573 PTLSKKPEFPKDPKHPKDPEEPKKPK----------RPRSAQRPTRPKSPKLPELLDIPK 622

Query: 346 SPFRNYPQYSRYNPKNPESPFSPQNEDSIYNPENPNSPYNPFNENSLYHPGNPDSPYDWQ 405
           SP R        +PK+P+ P  PQ   S   PE P    +P        P +P  P+D +
Sbjct: 623 SPKRPE------SPKSPKRPPPPQRPSSPERPEGPKIIKSP------KPPKSPKPPFDPK 670

Query: 406 RLEK 409
             EK
Sbjct: 671 FKEK 674

Length = 943

>gnl|CDD|235787 PRK06370, PRK06370, mercuric reductase; Validated

 Score = 44.4 bits (106), Expect = 1e-04
 Identities = 16/40 (40%), Positives = 21/40 (52%), Gaps = 4/40 (10%)

Query: 432 DCFDIIIVGASAAGCVLANRLSEVSSLKVLLIEA---GGD 468
             +D I++GA  AG  LA R +    +KV LIE    GG 
Sbjct: 4   QRYDAIVIGAGQAGPPLAARAAG-LGMKVALIERGLLGGT 42

Length = 463

>gnl|CDD|223717 COG0644, FixC, Dehydrogenases (flavoproteins) [Energy production and conversion]

 Score = 44.0 bits (104), Expect = 2e-04
 Identities = 19/57 (33%), Positives = 29/57 (50%), Gaps = 5/57 (8%)

Query: 434 FDIIIVGASAAGCVLANRLSEVSSLKVLLIEAGGD--TPIHSRIPGMSSVLSLSEFD 488
           +D++IVGA  AG   A RL++ + L VL++E G +          G  S  +L E  
Sbjct: 4   YDVVIVGAGPAGSSAARRLAK-AGLDVLVLEKGSEPGAKPCC--GGGLSPRALEELI 57

Length = 396

>gnl|CDD|218770 pfam05834, Lycopene_cycl, Lycopene cyclase protein

 Score = 40.4 bits (95), Expect = 0.003
 Identities = 19/37 (51%), Positives = 25/37 (67%), Gaps = 1/37 (2%)

Query: 435 DIIIVGASAAGCVLANRLSE-VSSLKVLLIEAGGDTP 470
           D++IVGA  AG +LA RL +    L+VLLI+AG   P
Sbjct: 1   DLVIVGAGLAGLLLALRLRQARPGLRVLLIDAGPGPP 37

This family consists of lycopene beta and epsilon cyclase proteins. Carotenoids with cyclic end groups are essential components of the photosynthetic membranes in all plants, algae, and cyanobacteria. These lipid-soluble compounds protect against photo-oxidation, harvest light for photosynthesis, and dissipate excess light energy absorbed by the antenna pigments. The cyclisation of lycopene (psi, psi-carotene) is a key branch point in the pathway of carotenoid biosynthesis. Two types of cyclic end groups are found in higher plant carotenoids: the beta and epsilon rings. Carotenoids with two beta rings are ubiquitous, and those with one beta and one epsilon ring are common; however, carotenoids with two epsilon rings are rare. Length = 374

>gnl|CDD|240420 PTZ00441, PTZ00441, sporozoite surface protein 2 (SSP2); Provisional

 Score = 40.3 bits (94), Expect = 0.003
 Identities = 29/118 (24%), Positives = 45/118 (38%), Gaps = 13/118 (11%)

Query: 295 PENPASPFNPYNPEPSIFDSHNIYSFFSPHNPYSPFNPYNIDSPFNSDN-PDSPFRNYPQ 353
           P+NP  P  P  P      + N  + F P +   P       +P N     +S F +  +
Sbjct: 323 PDNPQDPVPP--PNEGKDGNPNEENLFPPGDDEVPDESNVPPNPPNVPGGSNSEFSSDVE 380

Query: 354 YSRYNPKNPESPFSPQNEDSIYNPENPNSPYN-PFN-----ENSLYHPGNPDSPYDWQ 405
                P NP +P  P+ E +I    N   P + P       +N+   P  P++  D Q
Sbjct: 381 N----PPNPPNPDIPEQEPNIPEDSNKEVPEDVPMEPEDDRDNNFNEPKKPENKGDGQ 434

Length = 576

>gnl|CDD|233671 TIGR01988, Ubi-OHases, Ubiquinone biosynthesis hydroxylase, UbiH/UbiF/VisC/COQ6 family

 Score = 39.9 bits (94), Expect = 0.003
 Identities = 16/32 (50%), Positives = 18/32 (56%)

Query: 435 DIIIVGASAAGCVLANRLSEVSSLKVLLIEAG 466
           DI+IVG    G  LA  L+    LKV LIEA 
Sbjct: 1   DIVIVGGGPVGLALALALARSGGLKVALIEAT 32

This model represents a family of FAD-dependent hydroxylases (monooxygenases) which are all believed to act in the aerobic ubiquinone biosynthesis pathway. A separate set of hydroxylases, as yet undiscovered, are believed to be active under anaerobic conditions. In E. coli three enzyme activities have been described, UbiB (which acts first at position 6, see TIGR01982), UbiH (which acts at position 4,) and UbiF (which acts at position 5,). UbiH and UbiF are similar to one another and form the basis of this subfamily. Interestingly, E. coli contains another hydroxylase gene, called visC, that is highly similar to UbiF, adjacent to UbiH and, when mutated, results in a phenotype similar to that of UbiH (which has also been named visB). Several other species appear to have three homologs in this family, although they assort themselves differently on phylogenetic trees (e.g. Xylella and Mesorhizobium) making it difficult to ascribe a specific activity to each one. Eukaryotes appear to have only a single homolog in this subfamily (COQ6,) which complements UbiH, but also possess a non-orthologous gene, COQ7 which complements UbiF [Biosynthesis of cofactors, prosthetic groups, and carriers, Menaquinone and ubiquinone]. Length = 387

>gnl|CDD|223727 COG0654, UbiH, 2-polyprenyl-6-methoxyphenol hydroxylase and related FAD-dependent oxidoreductases [Coenzyme metabolism / Energy production and conversion]

 Score = 39.7 bits (93), Expect = 0.004
 Identities = 14/32 (43%), Positives = 18/32 (56%), Gaps = 1/32 (3%)

Query: 434 FDIIIVGASAAGCVLANRLSEVSSLKVLLIEA 465
            D+ IVGA  AG  LA  L+  + L V L+E 
Sbjct: 3   LDVAIVGAGPAGLALALALAR-AGLDVTLLER 33

Length = 387

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	720
KOG1238|consensus	623		100.0
PF00732	296	GMC_oxred_N: GMC oxidoreductase; InterPro: IPR0001	100.0
TIGR01810	532	betA choline dehydrogenase. This enzyme is a membe	100.0
PRK02106	560	choline dehydrogenase; Validated	100.0
COG2303	542	BetA Choline dehydrogenase and related flavoprotei	99.97
PLN02785	587	Protein HOTHEAD	99.94
TIGR02462	544	pyranose_ox pyranose oxidase. Pyranose oxidase (al	99.78
PF01266	358	DAO: FAD dependent oxidoreductase; InterPro: IPR00	99.64
PRK11101	546	glpA sn-glycerol-3-phosphate dehydrogenase subunit	99.61
TIGR03329	460	Phn_aa_oxid putative aminophosphonate oxidoreducta	99.59
PRK07121	492	hypothetical protein; Validated	99.55
PF00890	417	FAD_binding_2: FAD binding domain of the Pfam fami	99.53
PRK12835	584	3-ketosteroid-delta-1-dehydrogenase; Reviewed	99.52
TIGR01373	407	soxB sarcosine oxidase, beta subunit family, heter	99.51
PRK12409	410	D-amino acid dehydrogenase small subunit; Provisio	99.51
PRK00711	416	D-amino acid dehydrogenase small subunit; Validate	99.5
PTZ00383	497	malate:quinone oxidoreductase; Provisional	99.49
TIGR01377	380	soxA_mon sarcosine oxidase, monomeric form. Sarcos	99.49
PRK12844	557	3-ketosteroid-delta-1-dehydrogenase; Reviewed	99.49
PRK12837	513	3-ketosteroid-delta-1-dehydrogenase; Provisional	99.49
PRK07573	640	sdhA succinate dehydrogenase flavoprotein subunit;	99.48
PRK08274	466	tricarballylate dehydrogenase; Validated	99.48
PRK12845	564	3-ketosteroid-delta-1-dehydrogenase; Reviewed	99.48
PRK06481	506	fumarate reductase flavoprotein subunit; Validated	99.47
PRK11259	376	solA N-methyltryptophan oxidase; Provisional	99.45
PRK06452	566	sdhA succinate dehydrogenase flavoprotein subunit;	99.44
TIGR01320	483	mal_quin_oxido malate:quinone-oxidoreductase. This	99.44
COG0579	429	Predicted dehydrogenase [General function predicti	99.44
PRK08958	588	sdhA succinate dehydrogenase flavoprotein subunit;	99.43
PRK11728	393	hydroxyglutarate oxidase; Provisional	99.43
COG0578	532	GlpA Glycerol-3-phosphate dehydrogenase [Energy pr	99.43
TIGR03364	365	HpnW_proposed FAD dependent oxidoreductase TIGR033	99.43
TIGR01813	439	flavo_cyto_c flavocytochrome c. This model describ	99.41
PLN02464	627	glycerol-3-phosphate dehydrogenase	99.4
PLN00128	635	Succinate dehydrogenase [ubiquinone] flavoprotein	99.4
PTZ00139	617	Succinate dehydrogenase [ubiquinone] flavoprotein	99.4
PRK06175	433	L-aspartate oxidase; Provisional	99.39
PRK07843	557	3-ketosteroid-delta-1-dehydrogenase; Reviewed	99.39
PRK09078	598	sdhA succinate dehydrogenase flavoprotein subunit;	99.39
PRK05945	575	sdhA succinate dehydrogenase flavoprotein subunit;	99.38
PRK12842	574	putative succinate dehydrogenase; Reviewed	99.38
PRK08641	589	sdhA succinate dehydrogenase flavoprotein subunit;	99.37
PTZ00306	1167	NADH-dependent fumarate reductase; Provisional	99.37
PRK08626	657	fumarate reductase flavoprotein subunit; Provision	99.36
PRK07804	541	L-aspartate oxidase; Provisional	99.36
PRK07057	591	sdhA succinate dehydrogenase flavoprotein subunit;	99.35
PRK05257	494	malate:quinone oxidoreductase; Validated	99.35
TIGR01812	566	sdhA_frdA_Gneg succinate dehydrogenase or fumarate	99.35
PRK06263	543	sdhA succinate dehydrogenase flavoprotein subunit;	99.35
PLN02815	594	L-aspartate oxidase	99.34
COG0665	387	DadA Glycine/D-amino acid oxidases (deaminating) [	99.33
PRK08275	554	putative oxidoreductase; Provisional	99.33
PRK07803	626	sdhA succinate dehydrogenase flavoprotein subunit;	99.33
KOG0260|consensus	1605		99.32
PRK08071	510	L-aspartate oxidase; Provisional	99.31
PRK12839	572	hypothetical protein; Provisional	99.31
PRK06854	608	adenylylsulfate reductase subunit alpha; Validated	99.31
PRK09231	582	fumarate reductase flavoprotein subunit; Validated	99.31
PRK06069	577	sdhA succinate dehydrogenase flavoprotein subunit;	99.31
PRK13369	502	glycerol-3-phosphate dehydrogenase; Provisional	99.31
KOG2820|consensus	399		99.31
PRK13339	497	malate:quinone oxidoreductase; Reviewed	99.31
PRK12834	549	putative FAD-binding dehydrogenase; Reviewed	99.31
PRK12266	508	glpD glycerol-3-phosphate dehydrogenase; Reviewed	99.31
PRK07395	553	L-aspartate oxidase; Provisional	99.31
COG1233	487	Phytoene dehydrogenase and related proteins [Secon	99.3
PRK12843	578	putative FAD-binding dehydrogenase; Reviewed	99.3
TIGR01811	603	sdhA_Bsu succinate dehydrogenase or fumarate reduc	99.3
TIGR01176	580	fum_red_Fp fumarate reductase, flavoprotein subuni	99.29
COG2081	408	Predicted flavoproteins [General function predicti	99.29
PRK13800	897	putative oxidoreductase/HEAT repeat-containing pro	99.29
PF03486	409	HI0933_like: HI0933-like protein; InterPro: IPR004	99.29
TIGR00551	488	nadB L-aspartate oxidase. L-aspartate oxidase is t	99.28
PRK06134	581	putative FAD-binding dehydrogenase; Reviewed	99.27
KOG0260|consensus	1605		99.27
PRK08205	583	sdhA succinate dehydrogenase flavoprotein subunit;	99.27
PRK09077	536	L-aspartate oxidase; Provisional	99.27
TIGR02061	614	aprA adenosine phosphosulphate reductase, alpha su	99.26
PRK07512	513	L-aspartate oxidase; Provisional	99.25
COG1635	262	THI4 Ribulose 1,5-bisphosphate synthetase, convert	99.24
PLN02661	357	Putative thiazole synthesis	99.23
PRK01747	662	mnmC bifunctional tRNA (mnm(5)s(2)U34)-methyltrans	99.22
PF01946	230	Thi4: Thi4 family; PDB: 1RP0_A 3FPZ_B 3JSK_K.	99.22
TIGR02730	493	carot_isom carotene isomerase. Members of this fam	99.21
TIGR02734	502	crtI_fam phytoene desaturase. Phytoene is converte	99.21
PRK04176	257	ribulose-1,5-biphosphate synthetase; Provisional	99.18
PRK10157	428	putative oxidoreductase FixC; Provisional	99.18
TIGR00292	254	thiazole biosynthesis enzyme. This enzyme is invol	99.17
PRK13977	576	myosin-cross-reactive antigen; Provisional	99.13
KOG2844|consensus	856		99.12
PTZ00363	443	rab-GDP dissociation inhibitor; Provisional	99.1
PRK08401	466	L-aspartate oxidase; Provisional	99.1
PRK10015	429	oxidoreductase; Provisional	99.1
PF12831	428	FAD_oxidored: FAD dependent oxidoreductase; PDB: 3	99.09
COG0644	396	FixC Dehydrogenases (flavoproteins) [Energy produc	99.09
KOG0042|consensus	680		99.09
TIGR02733	492	desat_CrtD C-3',4' desaturase CrtD. Members of thi	99.09
COG1053	562	SdhA Succinate dehydrogenase/fumarate reductase, f	99.07
TIGR02485	432	CobZ_N-term precorrin 3B synthase CobZ. CobZ is es	99.05
PF01494	356	FAD_binding_3: FAD binding domain; InterPro: IPR00	99.01
PRK06185	407	hypothetical protein; Provisional	99.01
PRK07208	479	hypothetical protein; Provisional	99.0
KOG2853|consensus	509		99.0
COG3573	552	Predicted oxidoreductase [General function predict	98.99
KOG1298|consensus	509		98.99
COG0029	518	NadB Aspartate oxidase [Coenzyme metabolism]	98.97
PF06039	488	Mqo: Malate:quinone oxidoreductase (Mqo); InterPro	98.95
KOG4254|consensus	561		98.95
PRK07364	415	2-octaprenyl-6-methoxyphenyl hydroxylase; Validate	98.91
PRK07233	434	hypothetical protein; Provisional	98.89
PRK08773	392	2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hy	98.89
PRK06184	502	hypothetical protein; Provisional	98.88
PLN02985	514	squalene monooxygenase	98.87
PRK07333	403	2-octaprenyl-6-methoxyphenyl hydroxylase; Provisio	98.85
PRK08244	493	hypothetical protein; Provisional	98.84
TIGR03377	516	glycerol3P_GlpA glycerol-3-phosphate dehydrogenase	98.84
PRK05192	618	tRNA uridine 5-carboxymethylaminomethyl modificati	98.82
TIGR02731	453	phytoene_desat phytoene desaturase. Plants and cya	98.82
PRK07608	388	ubiquinone biosynthesis hydroxylase family protein	98.82
TIGR02032	295	GG-red-SF geranylgeranyl reductase family. This mo	98.81
PF01134	392	GIDA: Glucose inhibited division protein A; InterP	98.8
PRK07045	388	putative monooxygenase; Reviewed	98.8
PRK06126	545	hypothetical protein; Provisional	98.79
KOG2415|consensus	621		98.79
TIGR02023	388	BchP-ChlP geranylgeranyl reductase. This model rep	98.76
PRK09126	392	hypothetical protein; Provisional	98.76
TIGR00275	400	flavoprotein, HI0933 family. The model when search	98.76
TIGR01988	385	Ubi-OHases Ubiquinone biosynthesis hydroxylase, Ub	98.76
PRK05329	422	anaerobic glycerol-3-phosphate dehydrogenase subun	98.75
PRK07494	388	2-octaprenyl-6-methoxyphenyl hydroxylase; Provisio	98.73
PRK06183	538	mhpA 3-(3-hydroxyphenyl)propionate hydroxylase; Va	98.73
PRK05714	405	2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hy	98.73
TIGR03378	419	glycerol3P_GlpB glycerol-3-phosphate dehydrogenase	98.73
KOG2404|consensus	477		98.72
TIGR02028	398	ChlP geranylgeranyl reductase. This model represen	98.72
PLN00093	450	geranylgeranyl diphosphate reductase; Provisional	98.71
TIGR01350	461	lipoamide_DH dihydrolipoamide dehydrogenase. The m	98.71
COG0654	387	UbiH 2-polyprenyl-6-methoxyphenol hydroxylase and	98.71
PRK06847	375	hypothetical protein; Provisional	98.7
PRK08243	392	4-hydroxybenzoate 3-monooxygenase; Validated	98.7
TIGR02352	337	thiamin_ThiO glycine oxidase ThiO. This family con	98.7
TIGR02732	474	zeta_caro_desat carotene 7,8-desaturase. Carotene	98.69
PRK06834	488	hypothetical protein; Provisional	98.68
PRK07588	391	hypothetical protein; Provisional	98.68
PRK08013	400	oxidoreductase; Provisional	98.68
COG0492	305	TrxB Thioredoxin reductase [Posttranslational modi	98.68
PRK08020	391	ubiF 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquin	98.67
PRK06617	374	2-octaprenyl-6-methoxyphenyl hydroxylase; Validate	98.67
PLN02612	567	phytoene desaturase	98.66
PRK07538	413	hypothetical protein; Provisional	98.65
TIGR01984	382	UbiH 2-polyprenyl-6-methoxyphenol 4-hydroxylase. T	98.65
PRK05868	372	hypothetical protein; Validated	98.64
PRK08163	396	salicylate hydroxylase; Provisional	98.63
PRK07190	487	hypothetical protein; Provisional	98.63
PF13738	203	Pyr_redox_3: Pyridine nucleotide-disulphide oxidor	98.62
PLN02697	529	lycopene epsilon cyclase	98.61
PRK06416	462	dihydrolipoamide dehydrogenase; Reviewed	98.61
COG3380	331	Predicted NAD/FAD-dependent oxidoreductase [Genera	98.61
PRK05732	395	2-octaprenyl-6-methoxyphenyl hydroxylase; Validate	98.61
PRK08850	405	2-octaprenyl-6-methoxyphenol hydroxylase; Validate	98.59
KOG2852|consensus	380		98.59
PLN02172	461	flavin-containing monooxygenase FMO GS-OX	98.58
TIGR02360	390	pbenz_hydroxyl 4-hydroxybenzoate 3-monooxygenase.	98.58
PRK07236	386	hypothetical protein; Provisional	98.58
KOG2665|consensus	453		98.57
PRK08849	384	2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hy	98.57
PRK06753	373	hypothetical protein; Provisional	98.57
PRK06370	463	mercuric reductase; Validated	98.55
PRK11445	351	putative oxidoreductase; Provisional	98.55
TIGR00136	617	gidA glucose-inhibited division protein A. GidA, t	98.54
PRK06115	466	dihydrolipoamide dehydrogenase; Reviewed	98.54
PRK05249	461	soluble pyridine nucleotide transhydrogenase; Prov	98.53
PRK08132	547	FAD-dependent oxidoreductase; Provisional	98.52
PLN02576	496	protoporphyrinogen oxidase	98.51
PTZ00367	567	squalene epoxidase; Provisional	98.5
TIGR01424	446	gluta_reduc_2 glutathione-disulfide reductase, pla	98.5
PRK05675	570	sdhA succinate dehydrogenase flavoprotein subunit;	98.49
COG2907	447	Predicted NAD/FAD-binding protein [General functio	98.47
COG1249	454	Lpd Pyruvate/2-oxoglutarate dehydrogenase complex,	98.45
PF04820	454	Trp_halogenase: Tryptophan halogenase; InterPro: I	98.45
PLN02463	447	lycopene beta cyclase	98.44
PLN02487	569	zeta-carotene desaturase	98.44
TIGR01372	985	soxA sarcosine oxidase, alpha subunit family, hete	98.44
TIGR01989	437	COQ6 Ubiquinone biosynthesis mono0xygenase COQ6. T	98.44
TIGR01790	388	carotene-cycl lycopene cyclase family protein. Thi	98.42
PRK06475	400	salicylate hydroxylase; Provisional	98.42
PRK06996	398	hypothetical protein; Provisional	98.41
PLN02676	487	polyamine oxidase	98.41
PRK06467	471	dihydrolipoamide dehydrogenase; Reviewed	98.41
TIGR03140	515	AhpF alkyl hydroperoxide reductase, F subunit. Thi	98.4
PLN02507	499	glutathione reductase	98.36
COG3075	421	GlpB Anaerobic glycerol-3-phosphate dehydrogenase	98.36
TIGR01316	449	gltA glutamate synthase (NADPH), homotetrameric. T	98.35
PRK06327	475	dihydrolipoamide dehydrogenase; Validated	98.34
COG2072	443	TrkA Predicted flavoprotein involved in K+ transpo	98.34
PRK12831	464	putative oxidoreductase; Provisional	98.34
PRK15317	517	alkyl hydroperoxide reductase subunit F; Provision	98.33
PRK10262	321	thioredoxin reductase; Provisional	98.32
PRK08294	634	phenol 2-monooxygenase; Provisional	98.31
PRK12769	654	putative oxidoreductase Fe-S binding subunit; Revi	98.3
COG1232	444	HemY Protoporphyrinogen oxidase [Coenzyme metaboli	98.29
PRK12810	471	gltD glutamate synthase subunit beta; Reviewed	98.28
PF13450	68	NAD_binding_8: NAD(P)-binding Rossmann-like domain	98.28
PLN02529	738	lysine-specific histone demethylase 1	98.26
COG0445	621	GidA Flavin-dependent tRNA uridine 5-carboxymethyl	98.24
COG2509	486	Uncharacterized FAD-dependent dehydrogenases [Gene	98.24
TIGR03197	381	MnmC_Cterm tRNA U-34 5-methylaminomethyl-2-thiouri	98.24
PRK11749	457	dihydropyrimidine dehydrogenase subunit A; Provisi	98.2
KOG1335|consensus	506		98.18
PRK12775	1006	putative trifunctional 2-polyprenylphenol hydroxyl	98.17
KOG1399|consensus	448		98.16
PRK09564	444	coenzyme A disulfide reductase; Reviewed	98.15
TIGR01438	484	TGR thioredoxin and glutathione reductase selenopr	98.14
PRK12779	944	putative bifunctional glutamate synthase subunit b	98.14
KOG0029|consensus	501		98.13
COG1231	450	Monoamine oxidase [Amino acid transport and metabo	98.13
PRK09754	396	phenylpropionate dioxygenase ferredoxin reductase	98.12
PF00743	531	FMO-like: Flavin-binding monooxygenase-like; Inter	98.12
PRK12778	752	putative bifunctional 2-polyprenylphenol hydroxyla	98.1
TIGR03219	414	salicylate_mono salicylate 1-monooxygenase. Member	98.09
KOG2614|consensus	420		98.09
TIGR03315	1012	Se_ygfK putative selenate reductase, YgfK subunit.	98.09
PLN02268	435	probable polyamine oxidase	98.07
PRK09897	534	hypothetical protein; Provisional	98.06
TIGR01816	565	sdhA_forward succinate dehydrogenase, flavoprotein	98.06
PRK11883	451	protoporphyrinogen oxidase; Reviewed	98.03
PRK08010	441	pyridine nucleotide-disulfide oxidoreductase; Prov	98.02
PRK12771	564	putative glutamate synthase (NADPH) small subunit;	98.02
PRK12809	639	putative oxidoreductase Fe-S binding subunit; Revi	98.02
TIGR01318	467	gltD_gamma_fam glutamate synthase small subunit fa	98.01
TIGR00031	377	UDP-GALP_mutase UDP-galactopyranose mutase. The ge	97.97
PRK07845	466	flavoprotein disulfide reductase; Reviewed	97.97
PRK07251	438	pyridine nucleotide-disulfide oxidoreductase; Prov	97.96
TIGR01421	450	gluta_reduc_1 glutathione-disulfide reductase, ani	97.95
TIGR00562	462	proto_IX_ox protoporphyrinogen oxidase. This prote	97.94
PRK06116	450	glutathione reductase; Validated	97.94
PF06100	500	Strep_67kDa_ant: Streptococcal 67 kDa myosin-cross	97.93
PRK06292	460	dihydrolipoamide dehydrogenase; Validated	97.93
TIGR01292	300	TRX_reduct thioredoxin-disulfide reductase. This m	97.92
PRK09853	1019	putative selenate reductase subunit YgfK; Provisio	97.91
PF13434	341	K_oxygenase: L-lysine 6-monooxygenase (NADPH-requi	97.9
PRK07818	466	dihydrolipoamide dehydrogenase; Reviewed	97.89
COG3634	520	AhpF Alkyl hydroperoxide reductase, large subunit	97.88
COG1252	405	Ndh NADH dehydrogenase, FAD-containing subunit [En	97.87
COG0562	374	Glf UDP-galactopyranose mutase [Cell envelope biog	97.84
PRK05976	472	dihydrolipoamide dehydrogenase; Validated	97.84
PRK12416	463	protoporphyrinogen oxidase; Provisional	97.82
PRK14694	468	putative mercuric reductase; Provisional	97.81
PF05834	374	Lycopene_cycl: Lycopene cyclase protein; InterPro:	97.81
TIGR02053	463	MerA mercuric reductase. This model represents the	97.79
PLN02568	539	polyamine oxidase	97.79
KOG2311|consensus	679		97.78
TIGR03169	364	Nterm_to_SelD pyridine nucleotide-disulfide oxidor	97.77
PTZ00058	561	glutathione reductase; Provisional	97.76
TIGR03143	555	AhpF_homolog putative alkyl hydroperoxide reductas	97.76
PRK13984	604	putative oxidoreductase; Provisional	97.73
KOG2960|consensus	328		97.73
PRK13748	561	putative mercuric reductase; Provisional	97.73
COG3349	485	Uncharacterized conserved protein [Function unknow	97.73
PF07992	201	Pyr_redox_2: Pyridine nucleotide-disulphide oxidor	97.72
PF00996	438	GDI: GDP dissociation inhibitor; InterPro: IPR0182	97.69
PTZ00318	424	NADH dehydrogenase-like protein; Provisional	97.68
PRK14989	847	nitrite reductase subunit NirD; Provisional	97.66
PTZ00052	499	thioredoxin reductase; Provisional	97.64
TIGR01789	370	lycopene_cycl lycopene cyclase. This model represe	97.63
PRK13512	438	coenzyme A disulfide reductase; Provisional	97.63
PLN02546	558	glutathione reductase	97.6
PRK14727	479	putative mercuric reductase; Provisional	97.56
PTZ00449	943	104 kDa microneme/rhoptry antigen; Provisional	97.56
PRK05335	436	tRNA (uracil-5-)-methyltransferase Gid; Reviewed	97.56
PTZ00153	659	lipoamide dehydrogenase; Provisional	97.51
TIGR01423	486	trypano_reduc trypanothione-disulfide reductase. T	97.5
PLN02927	668	antheraxanthin epoxidase/zeaxanthin epoxidase	97.5
TIGR02374	785	nitri_red_nirB nitrite reductase [NAD(P)H], large	97.48
PLN02328	808	lysine-specific histone demethylase 1 homolog	97.43
TIGR00137	433	gid_trmFO tRNA:m(5)U-54 methyltransferase. This mo	97.42
PF13454	156	NAD_binding_9: FAD-NAD(P)-binding	97.4
COG1148	622	HdrA Heterodisulfide reductase, subunit A and rela	97.37
KOG0405|consensus	478		97.34
PRK04965	377	NADH:flavorubredoxin oxidoreductase; Provisional	97.33
PRK06912	458	acoL dihydrolipoamide dehydrogenase; Validated	97.25
PF00070	80	Pyr_redox: Pyridine nucleotide-disulphide oxidored	97.21
KOG0685|consensus	498		97.18
PRK07818	466	dihydrolipoamide dehydrogenase; Reviewed	97.16
KOG0404|consensus	322		97.14
PTZ00449	943	104 kDa microneme/rhoptry antigen; Provisional	97.09
TIGR02053	463	MerA mercuric reductase. This model represents the	97.08
PRK05976	472	dihydrolipoamide dehydrogenase; Validated	97.06
KOG1276|consensus	491		97.01
PRK06327	475	dihydrolipoamide dehydrogenase; Validated	97.0
PRK12814	652	putative NADPH-dependent glutamate synthase small	97.0
KOG4716|consensus	503		96.99
PLN03000	881	amine oxidase	96.99
PLN02852	491	ferredoxin-NADP+ reductase	96.95
PRK07846	451	mycothione reductase; Reviewed	96.94
TIGR01292	300	TRX_reduct thioredoxin-disulfide reductase. This m	96.91
PRK08255	765	salicylyl-CoA 5-hydroxylase; Reviewed	96.91
PRK12770	352	putative glutamate synthase subunit beta; Provisio	96.9
TIGR03452	452	mycothione_red mycothione reductase. Mycothiol, a	96.81
PRK06567	1028	putative bifunctional glutamate synthase subunit b	96.8
TIGR03385	427	CoA_CoA_reduc CoA-disulfide reductase. Members of	96.8
TIGR01317	485	GOGAT_sm_gam glutamate synthases, NADH/NADPH, smal	96.76
PRK06912	458	acoL dihydrolipoamide dehydrogenase; Validated	96.72
PLN02976	1713	amine oxidase	96.72
PRK06115	466	dihydrolipoamide dehydrogenase; Reviewed	96.7
TIGR01421	450	gluta_reduc_1 glutathione-disulfide reductase, ani	96.69
PRK05249	461	soluble pyridine nucleotide transhydrogenase; Prov	96.68
PRK06467	471	dihydrolipoamide dehydrogenase; Reviewed	96.61
TIGR03862	376	flavo_PP4765 uncharacterized flavoprotein, PP_4765	96.61
PRK06116	450	glutathione reductase; Validated	96.6
PTZ00188	506	adrenodoxin reductase; Provisional	96.53
PRK07845	466	flavoprotein disulfide reductase; Reviewed	96.5
KOG1439|consensus	440		96.44
PRK06292	460	dihydrolipoamide dehydrogenase; Validated	96.38
KOG3923|consensus	342		96.36
TIGR03467	419	HpnE squalene-associated FAD-dependent desaturase.	96.36
KOG3851|consensus	446		96.33
PRK08010	441	pyridine nucleotide-disulfide oxidoreductase; Prov	96.31
PRK14727	479	putative mercuric reductase; Provisional	96.28
PLN02507	499	glutathione reductase	96.26
COG0493	457	GltD NADPH-dependent glutamate synthase beta chain	95.94
TIGR01423	486	trypano_reduc trypanothione-disulfide reductase. T	95.92
KOG0399|consensus	2142		95.44
COG0446	415	HcaD Uncharacterized NAD(FAD)-dependent dehydrogen	95.39
KOG2403|consensus	642		95.38
PRK04965	377	NADH:flavorubredoxin oxidoreductase; Provisional	95.37
KOG3855|consensus	481		95.37
PF13434	341	K_oxygenase: L-lysine 6-monooxygenase (NADPH-requi	95.11
COG4716	587	Myosin-crossreactive antigen [Function unknown]	95.05
COG3486	436	IucD Lysine/ornithine N-monooxygenase [Secondary m	95.02
KOG1336|consensus	478		94.83
PF02558	151	ApbA: Ketopantoate reductase PanE/ApbA; InterPro:	94.72
PF01210	157	NAD_Gly3P_dh_N: NAD-dependent glycerol-3-phosphate	94.72
PF01593	450	Amino_oxidase: Flavin containing amine oxidoreduct	94.68
PF02737	180	3HCDH_N: 3-hydroxyacyl-CoA dehydrogenase, NAD bind	94.44
COG1206	439	Gid NAD(FAD)-utilizing enzyme possibly involved in	94.32
PRK09754	396	phenylpropionate dioxygenase ferredoxin reductase	94.3
COG0446	415	HcaD Uncharacterized NAD(FAD)-dependent dehydrogen	94.15
PF03721	185	UDPG_MGDP_dh_N: UDP-glucose/GDP-mannose dehydrogen	94.13
COG1251	793	NirB NAD(P)H-nitrite reductase [Energy production	93.96
TIGR01350	461	lipoamide_DH dihydrolipoamide dehydrogenase. The m	93.81
PRK07251	438	pyridine nucleotide-disulfide oxidoreductase; Prov	93.68
PRK06567	1028	putative bifunctional glutamate synthase subunit b	93.49
PRK01438	480	murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn	93.46
PRK06129	308	3-hydroxyacyl-CoA dehydrogenase; Validated	93.3
PRK02705	459	murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn	93.19
COG5044	434	MRS6 RAB proteins geranylgeranyltransferase compon	93.15
PRK06370	463	mercuric reductase; Validated	93.07
COG0569	225	TrkA K+ transport systems, NAD-binding component [	93.0
PF13738	203	Pyr_redox_3: Pyridine nucleotide-disulphide oxidor	92.99
PRK07846	451	mycothione reductase; Reviewed	92.95
PRK06416	462	dihydrolipoamide dehydrogenase; Reviewed	92.78
PRK08293	287	3-hydroxybutyryl-CoA dehydrogenase; Validated	92.61
COG4529	474	Uncharacterized protein conserved in bacteria [Fun	92.61
PRK09260	288	3-hydroxybutyryl-CoA dehydrogenase; Validated	92.59
PRK13512	438	coenzyme A disulfide reductase; Provisional	92.54
PRK06522	304	2-dehydropantoate 2-reductase; Reviewed	92.4
PRK05708	305	2-dehydropantoate 2-reductase; Provisional	92.38
PRK12921	305	2-dehydropantoate 2-reductase; Provisional	92.28
PRK14106	450	murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn	92.19
COG1249	454	Lpd Pyruvate/2-oxoglutarate dehydrogenase complex,	91.98
TIGR03452	452	mycothione_red mycothione reductase. Mycothiol, a	91.95
KOG4405|consensus	547		91.93
PRK07819	286	3-hydroxybutyryl-CoA dehydrogenase; Validated	91.81
PRK09564	444	coenzyme A disulfide reductase; Reviewed	91.74
TIGR01424	446	gluta_reduc_2 glutathione-disulfide reductase, pla	91.61
KOG2755|consensus	334		91.61
TIGR03140	515	AhpF alkyl hydroperoxide reductase, F subunit. Thi	91.58
PRK07066	321	3-hydroxybutyryl-CoA dehydrogenase; Validated	91.55
PRK07530	292	3-hydroxybutyryl-CoA dehydrogenase; Validated	91.54
KOG1800|consensus	468		91.54
PRK06249	313	2-dehydropantoate 2-reductase; Provisional	91.51
PRK08229	341	2-dehydropantoate 2-reductase; Provisional	91.41
PRK10262	321	thioredoxin reductase; Provisional	91.34
COG1004	414	Ugd Predicted UDP-glucose 6-dehydrogenase [Cell en	91.31
PRK06035	291	3-hydroxyacyl-CoA dehydrogenase; Validated	91.08
TIGR01316	449	gltA glutamate synthase (NADPH), homotetrameric. T	91.08
PF02254	116	TrkA_N: TrkA-N domain; InterPro: IPR003148 The reg	91.03
TIGR02354	200	thiF_fam2 thiamine biosynthesis protein ThiF, fami	91.03
PTZ00153	659	lipoamide dehydrogenase; Provisional	90.91
PRK15317	517	alkyl hydroperoxide reductase subunit F; Provision	90.86
TIGR03143	555	AhpF_homolog putative alkyl hydroperoxide reductas	90.83
PRK06718	202	precorrin-2 dehydrogenase; Reviewed	90.81
PF01488	135	Shikimate_DH: Shikimate / quinate 5-dehydrogenase;	90.81
TIGR02374	785	nitri_red_nirB nitrite reductase [NAD(P)H], large	90.78
PRK12770	352	putative glutamate synthase subunit beta; Provisio	90.6
PRK05808	282	3-hydroxybutyryl-CoA dehydrogenase; Validated	90.55
PTZ00058	561	glutathione reductase; Provisional	90.55
TIGR01470	205	cysG_Nterm siroheme synthase, N-terminal domain. T	90.45
PF01262	168	AlaDh_PNT_C: Alanine dehydrogenase/PNT, C-terminal	90.45
PF00899	135	ThiF: ThiF family; InterPro: IPR000594 Ubiquitin-a	90.25
PRK13748	561	putative mercuric reductase; Provisional	90.13
PRK12831	464	putative oxidoreductase; Provisional	90.01
cd01483	143	E1_enzyme_family Superfamily of activating enzymes	89.92
PRK06719	157	precorrin-2 dehydrogenase; Validated	89.88
PRK00094	325	gpsA NAD(P)H-dependent glycerol-3-phosphate dehydr	89.82
TIGR03026	411	NDP-sugDHase nucleotide sugar dehydrogenase. All o	89.8
TIGR00518	370	alaDH alanine dehydrogenase. The family of known L	89.8
TIGR01763	305	MalateDH_bact malate dehydrogenase, NAD-dependent.	89.75
COG1748	389	LYS9 Saccharopine dehydrogenase and related protei	89.68
PLN02546	558	glutathione reductase	89.68
PRK14989	847	nitrite reductase subunit NirD; Provisional	89.6
PRK06130	311	3-hydroxybutyryl-CoA dehydrogenase; Validated	89.59
PRK14694	468	putative mercuric reductase; Provisional	89.55
PRK04148	134	hypothetical protein; Provisional	89.47
PTZ00052	499	thioredoxin reductase; Provisional	89.41
PRK14618	328	NAD(P)H-dependent glycerol-3-phosphate dehydrogena	89.39
TIGR01438	484	TGR thioredoxin and glutathione reductase selenopr	89.37
cd01487	174	E1_ThiF_like E1_ThiF_like. Member of superfamily o	89.32
PRK12475	338	thiamine/molybdopterin biosynthesis MoeB-like prot	89.15
PRK07688	339	thiamine/molybdopterin biosynthesis ThiF/MoeB-like	89.14
PF13241	103	NAD_binding_7: Putative NAD(P)-binding; PDB: 3DFZ_	89.12
cd01080	168	NAD_bind_m-THF_DH_Cyclohyd NADP binding domain of	89.09
PRK11064	415	wecC UDP-N-acetyl-D-mannosamine dehydrogenase; Pro	89.09
PRK14620	326	NAD(P)H-dependent glycerol-3-phosphate dehydrogena	88.95
PLN02545	295	3-hydroxybutyryl-CoA dehydrogenase	88.91
PRK15116	268	sulfur acceptor protein CsdL; Provisional	88.81
cd05292	308	LDH_2 A subgroup of L-lactate dehydrogenases. L-la	88.73
PRK02472	447	murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn	88.7
PTZ00318	424	NADH dehydrogenase-like protein; Provisional	88.55
cd01075	200	NAD_bind_Leu_Phe_Val_DH NAD(P) binding domain of l	88.43
PRK11749	457	dihydropyrimidine dehydrogenase subunit A; Provisi	87.82
TIGR02279	503	PaaC-3OHAcCoADH 3-hydroxyacyl-CoA dehydrogenase Pa	87.68
TIGR02356	202	adenyl_thiF thiazole biosynthesis adenylyltransfer	87.62
PRK14619	308	NAD(P)H-dependent glycerol-3-phosphate dehydrogena	87.61
PRK07417	279	arogenate dehydrogenase; Reviewed	87.47
COG1252	405	Ndh NADH dehydrogenase, FAD-containing subunit [En	87.38
PRK12548	289	shikimate 5-dehydrogenase; Provisional	87.0
PRK12549	284	shikimate 5-dehydrogenase; Reviewed	86.98
cd05311	226	NAD_bind_2_malic_enz NAD(P) binding domain of mali	86.84
PLN02353	473	probable UDP-glucose 6-dehydrogenase	86.74
cd01339	300	LDH-like_MDH L-lactate dehydrogenase-like malate d	86.7
PRK11730	715	fadB multifunctional fatty acid oxidation complex	86.69
PRK08644	212	thiamine biosynthesis protein ThiF; Provisional	86.51
cd05291	306	HicDH_like L-2-hydroxyisocapronate dehydrogenases	86.47
PRK08268	507	3-hydroxy-acyl-CoA dehydrogenase; Validated	86.43
PRK07531	495	bifunctional 3-hydroxyacyl-CoA dehydrogenase/thioe	86.43
PRK12778	752	putative bifunctional 2-polyprenylphenol hydroxyla	86.3
COG0686	371	Ald Alanine dehydrogenase [Amino acid transport an	86.24
PRK08017	256	oxidoreductase; Provisional	86.14
TIGR02437	714	FadB fatty oxidation complex, alpha subunit FadB.	86.11
cd00401	413	AdoHcyase S-adenosyl-L-homocysteine hydrolase (Ado	85.99
COG1250	307	FadB 3-hydroxyacyl-CoA dehydrogenase [Lipid metabo	85.8
TIGR01915	219	npdG NADPH-dependent F420 reductase. This model re	85.72
TIGR03736	244	PRTRC_ThiF PRTRC system ThiF family protein. A nov	85.68
PRK06223	307	malate dehydrogenase; Reviewed	85.63
PRK15057	388	UDP-glucose 6-dehydrogenase; Provisional	85.52
PRK04308	445	murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn	85.41
cd01078	194	NAD_bind_H4MPT_DH NADP binding domain of methylene	84.76
TIGR01505	291	tartro_sem_red 2-hydroxy-3-oxopropionate reductase	84.66
PRK05690	245	molybdopterin biosynthesis protein MoeB; Provision	84.51
TIGR02441	737	fa_ox_alpha_mit fatty acid oxidation complex, alph	84.4
PTZ00082	321	L-lactate dehydrogenase; Provisional	84.37
PF13478	136	XdhC_C: XdhC Rossmann domain; PDB: 3ON5_A 2WE8_B 2	84.35
TIGR02355	240	moeB molybdopterin synthase sulfurylase MoeB. This	84.28
PRK09424	509	pntA NAD(P) transhydrogenase subunit alpha; Provis	84.25
cd00757	228	ThiF_MoeB_HesA_family ThiF_MoeB_HesA. Family of E1	84.19
TIGR00507	270	aroE shikimate 5-dehydrogenase. This model finds p	84.03
PRK08328	231	hypothetical protein; Provisional	84.02
PRK09496	453	trkA potassium transporter peripheral membrane com	83.92
PRK01710	458	murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn	83.91
COG1893	307	ApbA Ketopantoate reductase [Coenzyme metabolism]	83.77
PRK07326	237	short chain dehydrogenase; Provisional	83.74
KOG2304|consensus	298		83.68
PRK07774	250	short chain dehydrogenase; Provisional	83.63
PRK07067	257	sorbitol dehydrogenase; Provisional	83.6
PRK06057	255	short chain dehydrogenase; Provisional	83.48
PRK08217	253	fabG 3-ketoacyl-(acyl-carrier-protein) reductase;	83.15
TIGR02853	287	spore_dpaA dipicolinic acid synthetase, A subunit.	83.01
cd01065	155	NAD_bind_Shikimate_DH NAD(P) binding domain of Shi	82.92
PLN02520	529	bifunctional 3-dehydroquinate dehydratase/shikimat	82.91
PF03807	96	F420_oxidored: NADP oxidoreductase coenzyme F420-d	82.89
cd01485	198	E1-1_like Ubiquitin activating enzyme (E1), repeat	82.85
PRK08306	296	dipicolinate synthase subunit A; Reviewed	82.77
PF03446	163	NAD_binding_2: NAD binding domain of 6-phosphogluc	82.76
PRK07523	255	gluconate 5-dehydrogenase; Provisional	82.57
cd05191	86	NAD_bind_amino_acid_DH NAD(P) binding domain of am	82.53
PRK11154	708	fadJ multifunctional fatty acid oxidation complex	82.47
PRK00258	278	aroE shikimate 5-dehydrogenase; Reviewed	82.36
PLN02172	461	flavin-containing monooxygenase FMO GS-OX	82.33
PRK05993	277	short chain dehydrogenase; Provisional	82.3
PRK04690	468	murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn	82.28
PRK12779	944	putative bifunctional glutamate synthase subunit b	82.1
PRK15461	296	NADH-dependent gamma-hydroxybutyrate dehydrogenase	82.0
PRK06505	271	enoyl-(acyl carrier protein) reductase; Provisiona	81.93
cd01490	435	Ube1_repeat2 Ubiquitin activating enzyme (E1), rep	81.79
TIGR01832	248	kduD 2-deoxy-D-gluconate 3-dehydrogenase. This mod	81.78
PRK07231	251	fabG 3-ketoacyl-(acyl-carrier-protein) reductase;	81.76
TIGR02440	699	FadJ fatty oxidation complex, alpha subunit FadJ.	81.76
PF13460	183	NAD_binding_10: NADH(P)-binding ; PDB: 3OH8_A 3E8X	81.58
TIGR03325	262	BphB_TodD cis-2,3-dihydrobiphenyl-2,3-diol dehydro	81.51
PRK07060	245	short chain dehydrogenase; Provisional	81.49
PRK08223	287	hypothetical protein; Validated	81.46
PRK07831	262	short chain dehydrogenase; Provisional	81.44
PRK03369	488	murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn	81.32
cd00755	231	YgdL_like Family of activating enzymes (E1) of ubi	81.3
PRK00141	473	murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn	81.19
PRK06841	255	short chain dehydrogenase; Provisional	81.16
PRK11559	296	garR tartronate semialdehyde reductase; Provisiona	81.15
PF03435	386	Saccharop_dh: Saccharopine dehydrogenase ; InterPr	81.14

>KOG1238|consensus

Probab=100.00  E-value=3.9e-37  Score=347.37  Aligned_cols=288  Identities=42%  Similarity=0.623  Sum_probs=256.2

Q ss_pred             ccCCCcccEEEECCcHHHHHHHHHHHhcCCCcEEEEccCCCCCCCcccCCcccccccccccccccccccccccccccccc
Q psy14408        428 VKSGDCFDIIIVGASAAGCVLANRLSEVSSLKVLLIEAGGDTPIHSRIPGMSSVLSLSEFDHAYLAEPSQFAGLGVRNAR  507 (720)
Q Consensus       428 I~~d~eyDVVIIGSGiAGLvAA~~LAea~G~KVLVLEKG~~~~~ss~~Pg~~~~~~~~~l~~~y~s~p~~~g~l~l~~~~  507 (720)
                      .+...+||+||||||.+||+.|.+|+|.+-.+|||||||+......+.+......+...++|.|.++++...|..+.++.
T Consensus        52 ~~~~~~yDyIVVGgGtAGcvlAarLSEn~~~~VLLLEaGg~~~~~~~~p~~~~~~q~s~~dw~y~t~Ps~~ac~~m~~~~  131 (623)
T KOG1238|consen   52 SELDSSYDYIVVGGGTAGCVLAARLSENPNWSVLLLEAGGDPPLYSDPPLLAANLQLSLYDWSYHTEPSQHACLAMSEDR  131 (623)
T ss_pred             cccccCCCEEEECCCchhHHHHHhhccCCCceEEEEecCCCCcccccchHHHHHhccccccccCcCccChhhhhhhcCCc
Confidence            44667899999999999999999999987899999999988865667775555667788999999999999999999999


Q ss_pred             eeeccccccCCcccccchhhhcCCchhHHHHHHhcCCCCChhHHHHHHHhhhhchhhhccccccccCcCCcccccccccc
Q psy14408        508 IKITAGKGLGGSSAVQNILYQRGTSYDYENFAKLGYNGWGYDETLKYFVKSEDYRSVIYNESKAVHGTQGYLPVGLFKNK  587 (720)
Q Consensus       508 i~~~~G~~lGGgStvN~~~~~r~s~~d~~eWae~g~~dWsydellpyF~s~e~~~~~sld~d~~v~~~~G~L~va~~~~~  587 (720)
                      +.|.+|+++||++.+|++++.|+.+++|++|++.+..+|+|++++++|+++|.......+. ...++..|.+.++...+.
T Consensus       132 c~wpRGrVLGGsS~iN~m~Y~RG~r~Dyd~W~~~gnpgW~y~~vl~yf~k~E~~~~~~~~~-~~y~~~~g~~~ve~~~~~  210 (623)
T KOG1238|consen  132 CYWPRGRVLGGSSVLNAMFYVRGNRRDYDRWAAEGNPGWSYDEVLPYFKKSEDKVVPDPEL-TPYHGAGGPLLVEAGVYP  210 (623)
T ss_pred             eecCccceecccccccceEEecCCccchHHHHHhcCCCCCHHHHHHHHHHHhhccCCCccc-CcccccCCcceecccccc
Confidence            9999999999999999999999999999999999989999999999999999876433332 226788888888888887


Q ss_pred             cchHHHHHHHHHHHHcCCCCCCCCCCccccccccccCCccccCcchhHHHHHHHHHHhcCCCeEEEcCeEEEEEEEc-cC
Q psy14408        588 ENNIIREIFETSAQELGYPCPKDMNDRYVDVGFAELPGMTRYGLRFSAADAYLTPIAGKRTNLYVLKRSKVTKVIIN-DQ  666 (720)
Q Consensus       588 ~~~~~~q~llea~rklG~~~~~d~ng~~~~~G~~~~~~g~~~G~k~~aa~a~L~~Aa~e~aGVkIi~gt~VtkIl~e-~g  666 (720)
                        ......+.++.+++|... .|++++. ..|+..+......|.++.+..++++.+...+.++.+...+.|++|.+| .+
T Consensus       211 --~~~~~~~~~ag~e~G~~~-~D~nG~~-~tg~~~l~~t~~~g~R~s~~~a~l~~~~~~R~NL~~~~~~~vtrvl~D~~~  286 (623)
T KOG1238|consen  211 --NNLFTAFHRAGTEIGGSI-FDRNGER-HTGASLLQYTIRNGIRVSLAKAYLKPIRLTRPNLHISRNAAVTRVLIDPAG  286 (623)
T ss_pred             --CchhhHhHHhHHhcCCCc-cCCCCcc-ccchhhhhccccCCEEEEehhhhhhhhhccCccccccccceEEEEEEcCCC
Confidence              778889999999999544 4899988 899999999999999999999999998833679999999999999998 56


Q ss_pred             CcEEEEEEEecCCcEEEEEcCcEEEEccCCcchHHHHHHcCCCCccccccCCCC
Q psy14408        667 NVATGVEYVNSKGETVRVTANKEVILTAGAIANAQLLLLSGIGPKAHLDEVKIP  720 (720)
Q Consensus       667 GrAtGV~v~dt~G~e~tIkAkK~VVVAAGa~~Sp~LLl~SGIgpk~~L~~~gip  720 (720)
                      +++.||+.....|++.+|+|+|+||||||+++||+|||.|||||+++|+++|||
T Consensus       287 ~~a~gv~~~~~~~~~~~v~a~kEVILSAGAi~SPQLLMLSGIGP~~~L~~~gIp  340 (623)
T KOG1238|consen  287 KRAKGVEFVRDGGKEHTVKARKEVILSAGAINSPQLLMLSGIGPADHLKKLGIP  340 (623)
T ss_pred             ceEEEEEEEecCceeeeecccceEEEeccccCCHHHHHHcCCCcHHHHHhcCCC
Confidence            789999998844788999999999999999999999999999999999999997

>PF00732 GMC_oxred_N: GMC oxidoreductase; InterPro: IPR000172 The glucose-methanol-choline (GMC) oxidoreductases are FAD flavoproteins oxidoreductases [, ]

Probab=100.00  E-value=2e-35  Score=309.06  Aligned_cols=273  Identities=41%  Similarity=0.628  Sum_probs=203.3

Q ss_pred             ccEEEECCcHHHHHHHHHHHhcCC-CcEEEEccCCCCCCCcccCC-cccccccccccccccccccccccccccccceeec
Q psy14408        434 FDIIIVGASAAGCVLANRLSEVSS-LKVLLIEAGGDTPIHSRIPG-MSSVLSLSEFDHAYLAEPSQFAGLGVRNARIKIT  511 (720)
Q Consensus       434 yDVVIIGSGiAGLvAA~~LAea~G-~KVLVLEKG~~~~~ss~~Pg-~~~~~~~~~l~~~y~s~p~~~g~l~l~~~~i~~~  511 (720)
                      |||||||||.+|+++|.+||++ | .+|||||||........... ...........|.+...++    ..+....+.|.
T Consensus         1 yD~iIVGsG~~G~v~A~rLs~~-~~~~VlvlEaG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~   75 (296)
T PF00732_consen    1 YDYIIVGSGAGGSVVASRLSEA-GNKKVLVLEAGPRYPPEDSTPPSSFYQDFDSEYDWGYYSGPQ----PFLNGRTINWP   75 (296)
T ss_dssp             EEEEEES-SHHHHHHHHHHTTS-TTS-EEEEESSBSCTTSGHHGGGGGGGCTTTTTBBGEEECEE----ECTTTTSEEEE
T ss_pred             CCEEEECcCHHHHHHHHHHhhC-CCCcEEEEEccccCccccchhhhccccccCcccccccccccc----cccccceeeee
Confidence            7999999999999999999999 6 79999999987654431111 1111122234444433332    23566778888


Q ss_pred             cccccCCcccccchhhhcCCchhHHHHHHh-cCCCCChhHHHHHHHhhhhchhhhccccccccCcCCcccc-cccccccc
Q psy14408        512 AGKGLGGSSAVQNILYQRGTSYDYENFAKL-GYNGWGYDETLKYFVKSEDYRSVIYNESKAVHGTQGYLPV-GLFKNKEN  589 (720)
Q Consensus       512 ~G~~lGGgStvN~~~~~r~s~~d~~eWae~-g~~dWsydellpyF~s~e~~~~~sld~d~~v~~~~G~L~v-a~~~~~~~  589 (720)
                      +|+++||++.+|++++.|..+.++++|... +...|.|+++.++|+++|.+....    ...++..+.+.+ ......  
T Consensus        76 ~G~~lGGsS~in~~~~~R~~~~df~~w~~~~g~~~w~~~~l~~~~~~~e~~~~~~----~~~~g~~~~~~v~~~~~~~--  149 (296)
T PF00732_consen   76 RGKGLGGSSAINGGVYFRPSPSDFDEWAREFGADGWSWDDLEPYYDKAETFLGPS----SDLHGVDGPLPVSSSPPYP--  149 (296)
T ss_dssp             EB-STTGGGGTS--BE-B--HHHHHHHHHTTTCTTGSHHHHHHHHHHHEEEHTTB----GGGSCBSSSEEEHHHCSCH--
T ss_pred             cceecCCcccccccccccCCcccchhhhhcccccccchhhHHHHHHHHHhhcccc----ccccccccccccccccCCC--
Confidence            999999999999999999999999999986 556799999999999999776443    224555566665 222222  


Q ss_pred             hHHHHHHHHHHHHcCCCCCCCCCCccccccccccCCccccCcchhHHHHHHHHHHhcCCCeEEEcCeEEEEEEEc-cCCc
Q psy14408        590 NIIREIFETSAQELGYPCPKDMNDRYVDVGFAELPGMTRYGLRFSAADAYLTPIAGKRTNLYVLKRSKVTKVIIN-DQNV  668 (720)
Q Consensus       590 ~~~~q~llea~rklG~~~~~d~ng~~~~~G~~~~~~g~~~G~k~~aa~a~L~~Aa~e~aGVkIi~gt~VtkIl~e-~gGr  668 (720)
                      ....+.+.++++++|++...+++... .+|+|.....|..|.|..+...||..++ ++.|++|+++++|++|+++ ++++
T Consensus       150 ~~~~~~~~~a~~~~G~~~~~~~~~~~-~~g~~~~~~~~~~g~r~s~~~~~L~~a~-~~~n~~l~~~~~V~~i~~~~~~~~  227 (296)
T PF00732_consen  150 SPMNQALMDAAEELGIPVPQDFNGCD-PCGFCMTGFNCPNGARSSAATTYLPPAL-KRPNLTLLTNARVTRIIFDGDGGR  227 (296)
T ss_dssp             CTHHHHHHHHHHHTTHHBCSCTTSST-CSEEEECEECECTTCBBHHHHHHHHHHT-TTTTEEEEESEEEEEEEEETTSTE
T ss_pred             CHHHHHHHHHHHHcCCcccccccccc-ccccccccccccchhceehhhcccchhh-ccCCccEEcCcEEEEEeeeccccc
Confidence            45668888999999998655666555 7888765445899999999999999998 5669999999999999885 4789


Q ss_pred             EEEEEEEecCCc--EEEEEcCcEEEEccCCcchHHHHHHcCCCCccccccCCCC
Q psy14408        669 ATGVEYVNSKGE--TVRVTANKEVILTAGAIANAQLLLLSGIGPKAHLDEVKIP  720 (720)
Q Consensus       669 AtGV~v~dt~G~--e~tIkAkK~VVVAAGa~~Sp~LLl~SGIgpk~~L~~~gip  720 (720)
                      |+||++.+.+++  ..++.| |+||||||+++|++||++||||++.+|+++||+
T Consensus       228 a~gV~~~~~~~~~~~~~~~a-k~VIlaAGai~Tp~LLl~SGiG~~~~L~~~gi~  280 (296)
T PF00732_consen  228 ATGVEYVDNDGGVQRRIVAA-KEVILAAGAIGTPRLLLRSGIGPKDHLDALGIP  280 (296)
T ss_dssp             EEEEEEEETTTSEEEEEEEE-EEEEE-SHHHHHHHHHHHTTEE-HHHHHHTTHH
T ss_pred             eeeeeeeecCCcceeeeccc-eeEEeccCCCCChhhhcccccccHHHHHHcCCC
Confidence            999999997665  455556 579999999999999999999999999999974

These enzymes include a variety of proteins; choline dehydrogenase (CHD), methanol oxidase (MOX) and cellobiose dehydrogenase (1.1.99.18 from EC) [] which share a number of regions of sequence similarities. One of these regions, located in the N-terminal section, corresponds to the FAD ADP- binding domain. The function of the other conserved domains is not yet known.; GO: 0016614 oxidoreductase activity, acting on CH-OH group of donors, 0050660 flavin adenine dinucleotide binding, 0055114 oxidation-reduction process; PDB: 3Q9T_B 1B4V_A 3GYJ_A 1CBO_A 1B8S_A 1N4V_A 1N4W_A 3CNJ_A 1IJH_A 2GEW_A ....

>TIGR01810 betA choline dehydrogenase

Probab=100.00  E-value=2.8e-34  Score=326.19  Aligned_cols=271  Identities=40%  Similarity=0.581  Sum_probs=214.9

Q ss_pred             cEEEECCcHHHHHHHHHHHhcCC-CcEEEEccCCCCC---CCcccCCcccccc-ccccccccccccccccccccccccee
Q psy14408        435 DIIIVGASAAGCVLANRLSEVSS-LKVLLIEAGGDTP---IHSRIPGMSSVLS-LSEFDHAYLAEPSQFAGLGVRNARIK  509 (720)
Q Consensus       435 DVVIIGSGiAGLvAA~~LAea~G-~KVLVLEKG~~~~---~ss~~Pg~~~~~~-~~~l~~~y~s~p~~~g~l~l~~~~i~  509 (720)
                      ||||||||.+|+++|.+||++ | ++|||||+|....   .....+......+ +...+|.+...++..    +.++.+.
T Consensus         1 D~iIVG~G~aG~vvA~rLs~~-~~~~VlvlEaG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~----~~~~~~~   75 (532)
T TIGR01810         1 DYIIIGGGSAGSVLAGRLSED-VSNSVLVLEAGGSDYPWDLLIQMPAALAYPAGNKRYNWIYETEPEPH----MNNRRVG   75 (532)
T ss_pred             CEEEECCCchHHHHHHHhccC-CCCeEEEEecCCCCCCCCcceeCcHHHHHhcCCCCcceeeEcccCCC----CCCceEe
Confidence            899999999999999999999 7 7999999997432   1112222111111 223457665544432    4466788


Q ss_pred             eccccccCCcccccchhhhcCCchhHHHHHH-hcCCCCChhHHHHHHHhhhhchhhhccccccccCcCCccccccccccc
Q psy14408        510 ITAGKGLGGSSAVQNILYQRGTSYDYENFAK-LGYNGWGYDETLKYFVKSEDYRSVIYNESKAVHGTQGYLPVGLFKNKE  588 (720)
Q Consensus       510 ~~~G~~lGGgStvN~~~~~r~s~~d~~eWae-~g~~dWsydellpyF~s~e~~~~~sld~d~~v~~~~G~L~va~~~~~~  588 (720)
                      |.+|+++||++.+|++++.|....+|+.|++ .+..+|.|+++++||+++|.+....    ...++..|.+.+...... 
T Consensus        76 ~~~g~~lGGss~in~~~~~R~~~~d~~~w~~~~g~~~W~~~~l~py~~~~E~~~~~~----~~~~g~~G~~~v~~~~~~-  150 (532)
T TIGR01810        76 HARGKVLGGSSSINGMIYQRGNPMDYEKWAKPEGMESWDYADCLPYYKRLETTFGGE----KPYRGHDGPIKVRRGPAD-  150 (532)
T ss_pred             eecccccCCCCCEeeeEEecCCHHHHHHHHHhcCCCCCCHHHHHHHHHHHhccCCCC----cccCCCCCCEEEecCCCC-
Confidence            9999999999999999999999999999988 5778999999999999999776421    124677787777655444 


Q ss_pred             chHHHHHHHHHHHHcCCCCCCCCCCccccccccccCCccccCcchhHHHHHHHHHHhcCCCeEEEcCeEEEEEEEccCCc
Q psy14408        589 NNIIREIFETSAQELGYPCPKDMNDRYVDVGFAELPGMTRYGLRFSAADAYLTPIAGKRTNLYVLKRSKVTKVIINDQNV  668 (720)
Q Consensus       589 ~~~~~q~llea~rklG~~~~~d~ng~~~~~G~~~~~~g~~~G~k~~aa~a~L~~Aa~e~aGVkIi~gt~VtkIl~e~gGr  668 (720)
                       ....+.+.++++++|++...++++.. .+|++.+...|..|.|..+..+||..++ ++.|++|+++++|++|+++ +++
T Consensus       151 -~~~~~~~~~a~~~~G~~~~~~~~~~~-~~g~~~~~~~~~~g~r~s~~~~~l~~a~-~r~nl~i~~~~~V~rI~~~-~~r  226 (532)
T TIGR01810       151 -NPLFQAFIEAGVEAGYNKTPDVNGFR-QEGFGPMDSTVHNGRRVSAARAYLHPAM-KRPNLEVQTRAFVTKINFE-GNR  226 (532)
T ss_pred             -CHHHHHHHHHHHHcCCCccCCCCCCC-ccceEEEEEEcCCCEEEcHHHHHhhhhc-cCCCeEEEeCCEEEEEEec-CCe
Confidence             56778888999999998877777655 5677766667778889999999998887 6778999999999999998 899


Q ss_pred             EEEEEEEecCCcEEEEEcCcEEEEccCCcchHHHHHHcCCCCccccccCCCC
Q psy14408        669 ATGVEYVNSKGETVRVTANKEVILTAGAIANAQLLLLSGIGPKAHLDEVKIP  720 (720)
Q Consensus       669 AtGV~v~dt~G~e~tIkAkK~VVVAAGa~~Sp~LLl~SGIgpk~~L~~~gip  720 (720)
                      |+||++.+ .|+..++.+.|+||||||+++|++||++|||||+++|+++||+
T Consensus       227 a~GV~~~~-~~~~~~~~~ak~VIlaAGai~SP~LLl~SGIG~~~~L~~~gI~  277 (532)
T TIGR01810       227 ATGVEFKK-GGRKEHTEANKEVILSAGAINSPQLLQLSGIGDAEHLRELGIE  277 (532)
T ss_pred             EEEEEEEe-CCcEEEEEEeeeEEEccCCCCCHHHHHhcCCCCHHHHHhcCCC
Confidence            99999987 3333445444589999999999999999999999999999986

This enzyme is a member of the GMC oxidoreductase family (pfam00732 and pfam05199), sharing a common evoluntionary origin and enzymatic reaction with alcohol dehydrogenase. Outgrouping from this model, Caulobacter crescentus shares sequence homology with choline dehydrogenase, yet other genes participating in this enzymatic reaction have not currently been identified.

>PRK02106 choline dehydrogenase; Validated

Probab=100.00  E-value=6.9e-34  Score=324.97  Aligned_cols=275  Identities=39%  Similarity=0.649  Sum_probs=214.3

Q ss_pred             CcccEEEECCcHHHHHHHHHHHhcCCCcEEEEccCCCC---CCCcccCCcccccc-cccccccccccccccccccccccc
Q psy14408        432 DCFDIIIVGASAAGCVLANRLSEVSSLKVLLIEAGGDT---PIHSRIPGMSSVLS-LSEFDHAYLAEPSQFAGLGVRNAR  507 (720)
Q Consensus       432 ~eyDVVIIGSGiAGLvAA~~LAea~G~KVLVLEKG~~~---~~ss~~Pg~~~~~~-~~~l~~~y~s~p~~~g~l~l~~~~  507 (720)
                      .+|||||||||.+|+++|.+||+..|++|||||+|...   ......+......+ .....|.+...++..    ..++.
T Consensus         4 ~~~D~iIVG~G~aG~vvA~rLae~~g~~VlvlEaG~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~p~~~----~~~~~   79 (560)
T PRK02106          4 MEYDYIIIGAGSAGCVLANRLSEDPDVSVLLLEAGGPDYRWDFFIQMPAALAFPLQGKRYNWAYETEPEPH----MNNRR   79 (560)
T ss_pred             CcCcEEEECCcHHHHHHHHHHHhCCCCeEEEecCCCcccCCCcceeCcHHHHHhcCCCceeeceecccCCC----CCCCe
Confidence            46899999999999999999999339999999999643   11112232111111 223456665544332    34456


Q ss_pred             eeeccccccCCcccccchhhhcCCchhHHHHHHh-cCCCCChhHHHHHHHhhhhchhhhccccccccCcCCccccccc-c
Q psy14408        508 IKITAGKGLGGSSAVQNILYQRGTSYDYENFAKL-GYNGWGYDETLKYFVKSEDYRSVIYNESKAVHGTQGYLPVGLF-K  585 (720)
Q Consensus       508 i~~~~G~~lGGgStvN~~~~~r~s~~d~~eWae~-g~~dWsydellpyF~s~e~~~~~sld~d~~v~~~~G~L~va~~-~  585 (720)
                      +.|.+|+++||++.+|++++.|....+|+.|.+. +..+|.|+++++||+++|.+....    ...++..|.+.+... .
T Consensus        80 ~~~~~g~~lGGsS~iN~~~~~R~~~~Dfd~w~~~~g~~~Ws~~~l~py~~k~E~~~~~~----~~~~g~~gp~~~~~~~~  155 (560)
T PRK02106         80 MECPRGKVLGGSSSINGMVYIRGNAMDYDNWAELPGLEGWSYADCLPYFKKAETRDGGE----DDYRGGDGPLSVTRGKP  155 (560)
T ss_pred             eecccccccCCCCCccceEEecCCHHHHHHHHhhcCCCCCCHHHHHHHHHHhhccCCCC----ccccCCCCCEEEeCCCC
Confidence            8889999999999999999999999999999987 778999999999999999876211    124556676665432 2


Q ss_pred             cccchHHHHHHHHHHHHcCCCCCCCCCCccccccccccCCccccCcchhHHHHHHHHHHhcCCCeEEEcCeEEEEEEEcc
Q psy14408        586 NKENNIIREIFETSAQELGYPCPKDMNDRYVDVGFAELPGMTRYGLRFSAADAYLTPIAGKRTNLYVLKRSKVTKVIIND  665 (720)
Q Consensus       586 ~~~~~~~~q~llea~rklG~~~~~d~ng~~~~~G~~~~~~g~~~G~k~~aa~a~L~~Aa~e~aGVkIi~gt~VtkIl~e~  665 (720)
                      ..  ....+.+.++++++|++...+.++.. .+|++.+...|..|.|..+..+||..+. ++.|++|++++.|++|+++ 
T Consensus       156 ~~--~~~~~~~~~a~~~lG~~~~~~~~~~~-~~g~~~~~~~~~~g~R~s~~~~~l~~a~-~~~nl~i~~~a~V~rI~~~-  230 (560)
T PRK02106        156 GT--NPLFQAFVEAGVQAGYPRTDDLNGYQ-QEGFGPMDRTVTNGRRWSAARAYLDPAL-KRPNLTIVTHALTDRILFE-  230 (560)
T ss_pred             CC--CHHHHHHHHHHHHcCCCcCCCCCCCC-CceeEEEeeecCCCEEEChHHHhhcccc-CCCCcEEEcCCEEEEEEEe-
Confidence            22  45677888899999998877777665 6777777677788899999999998887 5678999999999999999 


Q ss_pred             CCcEEEEEEEecCCcEEEEEcCcEEEEccCCcchHHHHHHcCCCCccccccCCCC
Q psy14408        666 QNVATGVEYVNSKGETVRVTANKEVILTAGAIANAQLLLLSGIGPKAHLDEVKIP  720 (720)
Q Consensus       666 gGrAtGV~v~dt~G~e~tIkAkK~VVVAAGa~~Sp~LLl~SGIgpk~~L~~~gip  720 (720)
                      +++|+||++.+..+....+.| |+||||||++.|++||++|||+|+++|+++||+
T Consensus       231 ~~~a~GV~~~~~~~~~~~~~a-k~VILaaGai~TP~LLl~SGIG~~~~L~~~gI~  284 (560)
T PRK02106        231 GKRAVGVEYERGGGRETARAR-REVILSAGAINSPQLLQLSGIGPAEHLKELGIP  284 (560)
T ss_pred             CCeEEEEEEEeCCcEEEEEee-eeEEEccCCCCCHHHHhhcCCCChHHHHhcCCc
Confidence            889999999874443334455 589999999999999999999999999999985

>COG2303 BetA Choline dehydrogenase and related flavoproteins [Amino acid transport and metabolism]

Probab=99.97  E-value=1.9e-30  Score=296.12  Aligned_cols=280  Identities=38%  Similarity=0.600  Sum_probs=228.5

Q ss_pred             CCCcccEEEECCcHHHHHHHHHHHhcCCCcEEEEccCCCCCC-CcccCCcccccccc-cccccccccccccccccccccc
Q psy14408        430 SGDCFDIIIVGASAAGCVLANRLSEVSSLKVLLIEAGGDTPI-HSRIPGMSSVLSLS-EFDHAYLAEPSQFAGLGVRNAR  507 (720)
Q Consensus       430 ~d~eyDVVIIGSGiAGLvAA~~LAea~G~KVLVLEKG~~~~~-ss~~Pg~~~~~~~~-~l~~~y~s~p~~~g~l~l~~~~  507 (720)
                      ...++|+||||||.+|+++|.+|++. |++|+|||+|..... ...++..+...+.. ...|.+..+++.    .+.++.
T Consensus         4 ~~~~~D~vIVGsG~aG~~lA~rLs~~-g~~VllLEaG~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~----~~~~r~   78 (542)
T COG2303           4 MKMEYDYVIVGSGSAGSVLAARLSDA-GLSVLVLEAGGPDRRPLIQMPAAYAFLMNGPRYDWGFRTEPEP----HLRGRE   78 (542)
T ss_pred             ccCCCCEEEECCCchhHHHHHHhcCC-CCeEEEEeCCCCCCccceecchhHhhhccCcccCCccccCccc----CCCCcc
Confidence            34579999999999999999999966 999999999965433 23445444444444 667888776655    367788


Q ss_pred             eeeccccccCCcccccchhhhcCCchhHHHHHHh-cCCCCChhHHHHHHHhhhhchhhhccccccccCcCCccccccccc
Q psy14408        508 IKITAGKGLGGSSAVQNILYQRGTSYDYENFAKL-GYNGWGYDETLKYFVKSEDYRSVIYNESKAVHGTQGYLPVGLFKN  586 (720)
Q Consensus       508 i~~~~G~~lGGgStvN~~~~~r~s~~d~~eWae~-g~~dWsydellpyF~s~e~~~~~sld~d~~v~~~~G~L~va~~~~  586 (720)
                      +.|.+|+++||+|.+|++.+.|....+|+.|... |..+|.|+++++||+++|.+.+...+.....++..|.+.+.....
T Consensus        79 ~~~~rgk~lGGsS~ing~~~~R~~~~Df~~w~~~~G~~~W~y~d~lPyf~~aE~~~~~~g~~~~~~~g~~gp~~~~~~~~  158 (542)
T COG2303          79 LAWPRGKVLGGSSSINGMVYVRGHPEDFDAWAQESGAPGWPYDDVLPYFKRAEDLLGVGGQDLRTWHGGGGPLPVSPPRS  158 (542)
T ss_pred             ccccccCcccchhhhccceeecCCHHHHHHHHhhcCCCCCCccccHHHHHHHHhhcCCCCCCCCCCcCCCCCccccCCCC
Confidence            9999999999999999999999999999999876 558999999999999999866432110023577788888877744


Q ss_pred             ccchHHHHHHHHHHHHcCCCCCCCCCCccccccccccCCccccCcchhHHHHHHHHHHhcCCCeEEEcCeEEEEEEEccC
Q psy14408        587 KENNIIREIFETSAQELGYPCPKDMNDRYVDVGFAELPGMTRYGLRFSAADAYLTPIAGKRTNLYVLKRSKVTKVIINDQ  666 (720)
Q Consensus       587 ~~~~~~~q~llea~rklG~~~~~d~ng~~~~~G~~~~~~g~~~G~k~~aa~a~L~~Aa~e~aGVkIi~gt~VtkIl~e~g  666 (720)
                      .  ....+.+.++.+++|++...++++.. .+|++.+...+..|.++.+..++|..++ ++.+++|++++.|++|+++ +
T Consensus       159 ~--~~~~~a~~~a~~~~G~~~~~~~~~~~-~~g~g~~~~~~~~g~r~sa~~a~l~~a~-~~~nl~v~t~a~v~ri~~~-~  233 (542)
T COG2303         159 P--NPIARAFIEAGEQLGFPTTPDPNGAD-QEGFGPYCVTICNGRRWSAARAYLKPAL-KRPNLTLLTGARVRRILLE-G  233 (542)
T ss_pred             c--hHHHHHHHHHHHHcCCCcCcccccCC-CCCcccceeeccCCeEeechhhcchhHh-cCCceEEecCCEEEEEEEE-C
Confidence            4  67888888888999999988888877 6677766666668999999999999988 6788999999999999999 9


Q ss_pred             CcEEEEEEEecCC--cEEEEEcCcEEEEccCCcchHHHHHHcCCCCccccccCCCC
Q psy14408        667 NVATGVEYVNSKG--ETVRVTANKEVILTAGAIANAQLLLLSGIGPKAHLDEVKIP  720 (720)
Q Consensus       667 GrAtGV~v~dt~G--~e~tIkAkK~VVVAAGa~~Sp~LLl~SGIgpk~~L~~~gip  720 (720)
                      ++++||++...++  .+..+.+ ++||||||+++|++||+.||+++++.|..+||.
T Consensus       234 ~r~~gv~~~~~~~~~~~~~~a~-~~viL~AGai~Sp~LL~~Sgig~~~~~~~~g~~  288 (542)
T COG2303         234 DRAVGVEVEIGDGGTIETAVAA-REVVLAAGAINSPKLLLLSGIGPADHLLEHGID  288 (542)
T ss_pred             CeeEEEEEEeCCCCceEEEecC-ceEEEeccccCCHHHHHhcCCCchhhhhhcCCe
Confidence            9999999986443  2444455 579999999999999999999999999998873

>PLN02785 Protein HOTHEAD

Probab=99.94  E-value=2.7e-26  Score=264.19  Aligned_cols=252  Identities=27%  Similarity=0.408  Sum_probs=174.2

Q ss_pred             CCcccEEEECCcHHHHHHHHHHHhcCCCcEEEEccCCCCCCCcccCCcccccccccccccccccccccccccccccceee
Q psy14408        431 GDCFDIIIVGASAAGCVLANRLSEVSSLKVLLIEAGGDTPIHSRIPGMSSVLSLSEFDHAYLAEPSQFAGLGVRNARIKI  510 (720)
Q Consensus       431 d~eyDVVIIGSGiAGLvAA~~LAea~G~KVLVLEKG~~~~~ss~~Pg~~~~~~~~~l~~~y~s~p~~~g~l~l~~~~i~~  510 (720)
                      ..+||+||||||.+|+++|.+|+++  .+|||||||........+... ........+|.+....+..    ..++++.+
T Consensus        53 ~~~yD~IIVG~G~aG~~lA~~Ls~~--~~VLllE~G~~~~~~~~~~~~-~~~~~~~~d~~~~~~~q~~----~~~~~~~~  125 (587)
T PLN02785         53 DSAYDYIVVGGGTAGCPLAATLSQN--FSVLLLERGGVPFGNANVSFL-ENFHIGLADTSPTSASQAF----ISTDGVIN  125 (587)
T ss_pred             cccCCEEEECcCHHHHHHHHHHhcC--CcEEEEecCCCCCCCchhhhH-HhhCCcccccCCccccccc----cCCCceec
Confidence            3469999999999999999999984  899999999643111111110 0111123356665544322    34667899


Q ss_pred             ccccccCCcccccchhhhcCCchhHHHHHHhcCCCCChhHHHHHHHhhhhchhhhccccccccCcCCcccccccccccch
Q psy14408        511 TAGKGLGGSSAVQNILYQRGTSYDYENFAKLGYNGWGYDETLKYFVKSEDYRSVIYNESKAVHGTQGYLPVGLFKNKENN  590 (720)
Q Consensus       511 ~~G~~lGGgStvN~~~~~r~s~~d~~eWae~g~~dWsydellpyF~s~e~~~~~sld~d~~v~~~~G~L~va~~~~~~~~  590 (720)
                      .+|+++||++.+|++.+.|+...+++.      .+|.|+.+.++|++.|....         .          ....  .
T Consensus       126 ~rGr~LGGsS~iN~~~y~Rg~~~d~~~------~GW~~~~~~~~~~~~e~~~~---------~----------~~~~--~  178 (587)
T PLN02785        126 ARARVLGGGTCINAGFYSRASTRFIQK------AGWDAKLVNESYPWVERQIV---------H----------WPKV--A  178 (587)
T ss_pred             cccceecchhhhcCeEEEeCCHHHhcc------CCCCcccccchHHHHhcccc---------c----------CCCc--C
Confidence            999999999999999999999887743      47999999999999875421         0          0011  2


Q ss_pred             HHHHHHHHHHHHcCCCCCCCCCCccccccccccCCcc-ccCcchhHHHHHHHHHHhcCCCeEEEcCeEEEEEEEccC---
Q psy14408        591 IIREIFETSAQELGYPCPKDMNDRYVDVGFAELPGMT-RYGLRFSAADAYLTPIAGKRTNLYVLKRSKVTKVIINDQ---  666 (720)
Q Consensus       591 ~~~q~llea~rklG~~~~~d~ng~~~~~G~~~~~~g~-~~G~k~~aa~a~L~~Aa~e~aGVkIi~gt~VtkIl~e~g---  666 (720)
                      .....+.+++.++|+.........+ ..|.......+ ..|.|..+. .++. ++ ++.|++|++++.|++|+++++   
T Consensus       179 ~~~~~~~~a~~e~G~~~~n~~~~d~-~~G~~~g~~i~~~~g~R~saa-~l~~-~~-~~~nl~Vl~~a~V~rIl~~~~~~~  254 (587)
T PLN02785        179 PWQAALRDSLLEVGVSPFNGFTYDH-VYGTKVGGTIFDEFGRRHTAA-ELLA-AG-NPNKLRVLLHATVQKIVFDTSGKR  254 (587)
T ss_pred             hHHHHHHHHHHHcCCCccCCCCCCC-ccceeeeEEEeCCCCEEcCHH-HHHh-hc-CCCCeEEEeCCEEEEEEEcCCCCC
Confidence            3567788899999986321111111 11111000011 234454444 3444 44 467899999999999999822   


Q ss_pred             CcEEEEEEEecCCcEEEE----EcCcEEEEccCCcchHHHHHHcCCCCccccccCCCC
Q psy14408        667 NVATGVEYVNSKGETVRV----TANKEVILTAGAIANAQLLLLSGIGPKAHLDEVKIP  720 (720)
Q Consensus       667 GrAtGV~v~dt~G~e~tI----kAkK~VVVAAGa~~Sp~LLl~SGIgpk~~L~~~gip  720 (720)
                      ++|+||++.+.+|++.++    +++|+||||||++.||+||++|||||+++|+++|||
T Consensus       255 ~ra~GV~~~~~~g~~~~~~~~~~~~~eVILsAGai~sP~lL~~SGIGp~~~L~~~gIp  312 (587)
T PLN02785        255 PRATGVIFKDENGNQHQAFLSNNKGSEIILSAGAIGSPQMLLLSGIGPKKELKKHKIP  312 (587)
T ss_pred             ceEEEEEEEECCCceEEEEeecccCceEEecccccCCHHHHHHcCCCCHHHHHHcCCC
Confidence            389999998766654443    255689999999999999999999999999999997

>TIGR02462 pyranose_ox pyranose oxidase

Probab=99.78  E-value=2e-18  Score=197.11  Aligned_cols=245  Identities=17%  Similarity=0.222  Sum_probs=145.2

Q ss_pred             ccEEEECCcHHHHHHHHHHHhcCCCcEEEEccCCCCCCCcccCCc---ccccccccccccc---------cccccccc--
Q psy14408        434 FDIIIVGASAAGCVLANRLSEVSSLKVLLIEAGGDTPIHSRIPGM---SSVLSLSEFDHAY---------LAEPSQFA--  499 (720)
Q Consensus       434 yDVVIIGSGiAGLvAA~~LAea~G~KVLVLEKG~~~~~ss~~Pg~---~~~~~~~~l~~~y---------~s~p~~~g--  499 (720)
                      +||||||+|.+|+++|++||++ |+||+|||++...+...  .++   ....+++.....+         .+.+....  
T Consensus         1 ~dv~ivg~Gp~G~~~a~~l~~~-g~~v~~~e~~~~~~~~~--~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   77 (544)
T TIGR02462         1 YDVFIAGSGPIGCTYARLCVDA-GLKVAMVEIGAADSFLK--IGAHKKNEIEYQKDIDKFVNVIKGALQSVSVPVSNLVI   77 (544)
T ss_pred             CcEEEECCchHHHHHHHHHHHC-CCeEEEEeccCccCCCc--ccccccccccccccHHHHHHHHhhhccccccccccCCc
Confidence            6999999999999999999999 99999999987664210  000   0000011111000         00000000  


Q ss_pred             -------------cccccc---------ccee-eccccccCCcccccchhhhcCCchhHHHHHHhcCCCC--ChhHHHHH
Q psy14408        500 -------------GLGVRN---------ARIK-ITAGKGLGGSSAVQNILYQRGTSYDYENFAKLGYNGW--GYDETLKY  554 (720)
Q Consensus       500 -------------~l~l~~---------~~i~-~~~G~~lGGgStvN~~~~~r~s~~d~~eWae~g~~dW--sydellpy  554 (720)
                                   ...+.+         ..+. ..+-+.+||.++.|++.+.|....++ .|   ...+|  +|+++.+|
T Consensus        78 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ar~R~vGGsS~hW~g~~~R~~p~~r-~g---~~~dWPI~y~eL~Py  153 (544)
T TIGR02462        78 PTLDPTAWSASIESFFVSNGKNPEQDPFRNLSGEAVTRGVGGMSTHWTCATPRFHREER-PK---LSDDAAEDDAEWDRL  153 (544)
T ss_pred             CCCCccccccCCCcceecCCCCcccCchhccChhheeeccCchhhhcCcccCCCCHHhc-cC---CCCCCCCCHHHHHHH
Confidence                         000000         0111 22457899999999999999887532 22   12588  99999999


Q ss_pred             HHhhhhchhhhccccccccCcCCcccccccccccchHHHHHHHHHHHHcCC-CCCCCCCCccccccccccCCccccCcch
Q psy14408        555 FVKSEDYRSVIYNESKAVHGTQGYLPVGLFKNKENNIIREIFETSAQELGY-PCPKDMNDRYVDVGFAELPGMTRYGLRF  633 (720)
Q Consensus       555 F~s~e~~~~~sld~d~~v~~~~G~L~va~~~~~~~~~~~q~llea~rklG~-~~~~d~ng~~~~~G~~~~~~g~~~G~k~  633 (720)
                      |.++|++++..           |..........   ...+.+.+.+.  |. ...   .... .|..    .+|..+.+.
T Consensus       154 Y~~Ae~~~gv~-----------g~~~~~~~~~~---~~~~~~~~~~~--g~~~~~---~~Pl-A~~~----~~c~~~ak~  209 (544)
T TIGR02462       154 YTKAESLIGTS-----------TDQFDESIRHN---LVLRKLQDEYK--GQRDFQ---PLPL-ACHR----RTDPTYVEW  209 (544)
T ss_pred             HHHHHHHhCCC-----------CCcCCCcccch---hHHHHHHHHhc--cccccc---cCch-hhhc----cCCCcccee
Confidence            99999888543           10000011111   11222222221  22 111   1111 1111    134444444


Q ss_pred             hHHHHHHHHHHh---cCCCeEEEcCeEEEEEEEcc-C-CcEEEEEEEec-CCcEEEEEcCcEEEEccCCcchHHHHHHcC
Q psy14408        634 SAADAYLTPIAG---KRTNLYVLKRSKVTKVIIND-Q-NVATGVEYVNS-KGETVRVTANKEVILTAGAIANAQLLLLSG  707 (720)
Q Consensus       634 ~aa~a~L~~Aa~---e~aGVkIi~gt~VtkIl~e~-g-GrAtGV~v~dt-~G~e~tIkAkK~VVVAAGa~~Sp~LLl~SG  707 (720)
                      ......+..+.+   +..+++|+.++.|++|+.++ + ++|+||++.+. +|++.+|+|+ .||||||++.|++||++|+
T Consensus       210 s~~~t~~~~~~~~~~~~~n~~l~~~a~v~~i~~d~~~~~~v~~v~~~d~~~g~~~~v~A~-~vVLAagaIetpRLLL~S~  288 (544)
T TIGR02462       210 HSADTVFDLQPNDDAPSERFTLLTNHRCTRLVRNETNESEIEAALVRDLLSGDRFEIKAD-VYVLACGAVHNPQILVNSG  288 (544)
T ss_pred             cCCccchhhhhhhhccCCCEEEEcCCEEEEEEeCCCCCceeEEEEEEECCCCcEEEEECC-EEEEccCchhhHHHHHhCC
Confidence            332233333330   24569999999999999973 2 57999999986 6888899998 6999999999999999998


Q ss_pred             CCC
Q psy14408        708 IGP  710 (720)
Q Consensus       708 Igp  710 (720)
                      ++.
T Consensus       289 ~~~  291 (544)
T TIGR02462       289 FGQ  291 (544)
T ss_pred             CCC
Confidence            874

Pyranose oxidase (also called glucose 2-oxidase) converts D-glucose and molecular oxygen to 2-dehydro-D-glucose and hydrogen peroxide. Peroxide production is believed to be important to the wood rot fungi in which this enzyme is found for lignin degradation.

>PF01266 DAO: FAD dependent oxidoreductase; InterPro: IPR006076 This entry includes various FAD dependent oxidoreductases: Glycerol-3-phosphate dehydrogenase (1

Probab=99.64  E-value=3.7e-15  Score=156.82  Aligned_cols=62  Identities=32%  Similarity=0.466  Sum_probs=47.6

Q ss_pred             HHHHHHhcCCCeEEEcCeEEEEEEEccCCcEEEEEEEecCCcEEEEEcCcEEEEccCCcchHHHHHHcCCC
Q psy14408        639 YLTPIAGKRTNLYVLKRSKVTKVIINDQNVATGVEYVNSKGETVRVTANKEVILTAGAIANAQLLLLSGIG  709 (720)
Q Consensus       639 ~L~~Aa~e~aGVkIi~gt~VtkIl~e~gGrAtGV~v~dt~G~e~tIkAkK~VVVAAGa~~Sp~LLl~SGIg  709 (720)
                      .|.+.+ ++.|++|+++++|++|..+ ++++.||++.+  |   .|+|+ .||+|+|. |+..|+...|+.
T Consensus       152 ~l~~~~-~~~Gv~i~~~~~V~~i~~~-~~~v~gv~~~~--g---~i~ad-~vV~a~G~-~s~~l~~~~~~~  213 (358)
T PF01266_consen  152 ALAAEA-QRAGVEIRTGTEVTSIDVD-GGRVTGVRTSD--G---EIRAD-RVVLAAGA-WSPQLLPLLGLD  213 (358)
T ss_dssp             HHHHHH-HHTT-EEEESEEEEEEEEE-TTEEEEEEETT--E---EEEEC-EEEE--GG-GHHHHHHTTTTS
T ss_pred             hhHHHH-HHhhhhccccccccchhhc-ccccccccccc--c---ccccc-eeEecccc-cceeeeeccccc
Confidence            344444 4779999999999999999 88899998765  4   59997 59999996 788888888764

1.99.5 from EC), Sarcosine oxidase beta subunit (1.5.3.1 from EC), D-alanine oxidase (1.4.99.1 from EC), D-aspartate oxidase (1.4.3.1 from EC). D-amino acid oxidase (1.4.3.3 from EC) (DAMOX or DAO) is an FAD flavoenzyme that catalyzes the oxidation of neutral and basic D-amino acids into their corresponding keto acids. DAOs have been characterised and sequenced in fungi and vertebrates where they are known to be located in the peroxisomes. D-aspartate oxidase (1.4.3.1 from EC) (DASOX) [] is an enzyme, structurally related to DAO, which catalyzes the same reaction but is active only toward dicarboxylic D-amino acids. In DAO, a conserved histidine has been shown [] to be important for the enzyme's catalytic activity.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2RGO_A 3NYE_A 3NYF_A 3NYC_A 3SM8_A 3SGL_A 3PVC_A 3DME_A 2GAH_B 3NLC_A ....

>PRK11101 glpA sn-glycerol-3-phosphate dehydrogenase subunit A; Provisional

Probab=99.61  E-value=1.9e-14  Score=165.19  Aligned_cols=85  Identities=20%  Similarity=0.231  Sum_probs=60.7

Q ss_pred             cccccccCCccccCcchhHHHHHHHHHHhcCCCeEEEcCeEEEEEEEccCCcEEEEEEEec-CCcEEEEEcCcEEEEccC
Q psy14408        617 DVGFAELPGMTRYGLRFSAADAYLTPIAGKRTNLYVLKRSKVTKVIINDQNVATGVEYVNS-KGETVRVTANKEVILTAG  695 (720)
Q Consensus       617 ~~G~~~~~~g~~~G~k~~aa~a~L~~Aa~e~aGVkIi~gt~VtkIl~e~gGrAtGV~v~dt-~G~e~tIkAkK~VVVAAG  695 (720)
                      ..|..+...+.....  ....+++..|.  +.|++|+++++|++|+.+ +++++||++.+. +|+..+|+|+ .||+|||
T Consensus       135 ~~ga~~~~dg~vdp~--rl~~al~~~A~--~~Ga~i~~~t~V~~i~~~-~~~v~gv~v~d~~~g~~~~i~A~-~VVnAaG  208 (546)
T PRK11101        135 LIGAVKVPDGTVDPF--RLTAANMLDAK--EHGAQILTYHEVTGLIRE-GDTVCGVRVRDHLTGETQEIHAP-VVVNAAG  208 (546)
T ss_pred             ceEEEEecCcEECHH--HHHHHHHHHHH--hCCCEEEeccEEEEEEEc-CCeEEEEEEEEcCCCcEEEEECC-EEEECCC
Confidence            345555554332221  22334455555  789999999999999988 788999998764 4555689997 5999999


Q ss_pred             CcchHHHHHHcCC
Q psy14408        696 AIANAQLLLLSGI  708 (720)
Q Consensus       696 a~~Sp~LLl~SGI  708 (720)
                      + |+..|+...|+
T Consensus       209 ~-wa~~l~~~~g~  220 (546)
T PRK11101        209 I-WGQHIAEYADL  220 (546)
T ss_pred             h-hHHHHHHhcCC
Confidence            6 78888877765

>TIGR03329 Phn_aa_oxid putative aminophosphonate oxidoreductase

Probab=99.59  E-value=1.9e-14  Score=161.48  Aligned_cols=43  Identities=28%  Similarity=0.304  Sum_probs=37.8

Q ss_pred             CcccCCCcccEEEECCcHHHHHHHHHHHhc-CCCcEEEEccCCC
Q psy14408        426 PYVKSGDCFDIIIVGASAAGCVLANRLSEV-SSLKVLLIEAGGD  468 (720)
Q Consensus       426 ~~I~~d~eyDVVIIGSGiAGLvAA~~LAea-~G~KVLVLEKG~~  468 (720)
                      ..+..+.++||||||||++|+++|++|+++ +|++|+||||+..
T Consensus        17 ~~L~~~~~~DVvIIGgGi~Gls~A~~La~~~~G~~V~vlE~~~~   60 (460)
T TIGR03329        17 PPLVGDTQADVCIVGGGFTGLWTAIMIKQQRPALDVLVLEADLC   60 (460)
T ss_pred             CCCCCCceeCEEEECCCHHHHHHHHHHHHhCCCCeEEEEeCCcc
Confidence            356777889999999999999999999996 4899999999843

This clade of sequences are members of the pfam01266 family of FAD-dependent oxidoreductases. Characterized proteins within this family include glycerol-3-phosphate dehydrogenase (1.1.99.5), sarcosine oxidase beta subunit (1.5.3.1) and a number of deaminating amino acid oxidases (1.4.-.-). These genes have been consistently observed in a genomic context including genes for the import and catabolism of 2-aminoethylphosphonate (AEP). If the substrate of this oxidoreductase is AEP itself, then it is probably acting in the manner of a deaminating oxidase, resulting in the same product (phosphonoacetaldehyde) as the transaminase PhnW (TIGR02326), but releasing ammonia instead of coupling to pyruvate:alanine. Alternatively, it is reasonable to suppose that the various ABC cassette transporters which are also associated with these loci allow the import of phosphonates closely related to AEP which may not be substrates for PhnW.

>PRK07121 hypothetical protein; Validated

Probab=99.55  E-value=1.6e-13  Score=155.26  Aligned_cols=66  Identities=29%  Similarity=0.389  Sum_probs=50.7

Q ss_pred             HHHHHHHhcCCCeEEEcCeEEEEEEEccCCcEEEEEEEecCCcEEEEEcCcEEEEccCCcchHHHHHH
Q psy14408        638 AYLTPIAGKRTNLYVLKRSKVTKVIINDQNVATGVEYVNSKGETVRVTANKEVILTAGAIANAQLLLL  705 (720)
Q Consensus       638 a~L~~Aa~e~aGVkIi~gt~VtkIl~e~gGrAtGV~v~dt~G~e~tIkAkK~VVVAAGa~~Sp~LLl~  705 (720)
                      ..|...+ ++.|++|+++++|++|+.+++|+|+||++.+ +|+...|+|+|.||||+|++....-|++
T Consensus       181 ~~L~~~~-~~~gv~i~~~~~v~~l~~~~~g~v~Gv~~~~-~~~~~~i~a~k~VVlAtGg~~~N~em~~  246 (492)
T PRK07121        181 DPLAKRA-AALGVQIRYDTRATRLIVDDDGRVVGVEARR-YGETVAIRARKGVVLAAGGFAMNREMVA  246 (492)
T ss_pred             HHHHHHH-HhCCCEEEeCCEEEEEEECCCCCEEEEEEEe-CCcEEEEEeCCEEEECCCCcCcCHHHHH
Confidence            3444444 4789999999999999987357999999865 5566789994479999999876554444

>PF00890 FAD_binding_2: FAD binding domain of the Pfam family

Probab=99.53  E-value=1.8e-13  Score=150.52  Aligned_cols=64  Identities=31%  Similarity=0.419  Sum_probs=48.7

Q ss_pred             HHHHHHHhcCCCeEEEcCeEEEEEEEccCCcEEEEEEEec-CCcEEEEEcCcEEEEccCCcchHHHHHH
Q psy14408        638 AYLTPIAGKRTNLYVLKRSKVTKVIINDQNVATGVEYVNS-KGETVRVTANKEVILTAGAIANAQLLLL  705 (720)
Q Consensus       638 a~L~~Aa~e~aGVkIi~gt~VtkIl~e~gGrAtGV~v~dt-~G~e~tIkAkK~VVVAAGa~~Sp~LLl~  705 (720)
                      ..|.+.+ ++.|++|+.+++|++|+++ +++|+||++.+. +|+.++|+|+ .||||+|++.. .++.+
T Consensus       145 ~~l~~~~-~~~gv~i~~~~~~~~Li~e-~g~V~Gv~~~~~~~g~~~~i~A~-aVIlAtGG~~~-~~~~~  209 (417)
T PF00890_consen  145 EALAKAA-EEAGVDIRFNTRVTDLITE-DGRVTGVVAENPADGEFVRIKAK-AVILATGGFGG-ELLRQ  209 (417)
T ss_dssp             HHHHHHH-HHTTEEEEESEEEEEEEEE-TTEEEEEEEEETTTCEEEEEEES-EEEE----BGG-HHHHH
T ss_pred             HHHHHHH-hhcCeeeeccceeeeEEEe-CCceeEEEEEECCCCeEEEEeee-EEEeccCcccc-ccccc
Confidence            3444444 4889999999999999998 889999999943 6888899998 79999999988 44433

; InterPro: IPR003953 In bacteria two distinct, membrane-bound, enzyme complexes are responsible for the interconversion of fumarate and succinate (1.3.99.1 from EC): fumarate reductase (Frd) is used in anaerobic growth, and succinate dehydrogenase (Sdh) is used in aerobic growth. Both complexes consist of two main components: a membrane-extrinsic component composed of a FAD-binding flavoprotein and an iron-sulphur protein; and an hydrophobic component composed of a membrane anchor protein and/or a cytochrome B. In eukaryotes mitochondrial succinate dehydrogenase (ubiquinone) (1.3.5.1 from EC) is an enzyme composed of two subunits: a FAD flavoprotein and and iron-sulphur protein. The flavoprotein subunit is a protein of about 60 to 70 Kd to which FAD is covalently bound to a histidine residue which is located in the N-terminal section of the protein []. The sequence around that histidine is well conserved in Frd and Sdh from various bacterial and eukaryotic species []. This family includes members that bind FAD such as the flavoprotein subunits from succinate and fumarate dehydrogenase, aspartate oxidase and the alpha subunit of adenylylsulphate reductase. ; GO: 0009055 electron carrier activity, 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2BS4_A 2BS3_A 2BS2_A 1E7P_J 1QLB_A 1KNR_A 1KNP_A 1CHU_A 2E5V_A 3AEF_A ....

>PRK12835 3-ketosteroid-delta-1-dehydrogenase; Reviewed

Probab=99.52  E-value=3.1e-13  Score=156.41  Aligned_cols=66  Identities=23%  Similarity=0.273  Sum_probs=53.2

Q ss_pred             HHHHHHHhcCCCeEEEcCeEEEEEEEccCCcEEEEEEEecCCcEEEEEcCcEEEEccCCcchHHHHHH
Q psy14408        638 AYLTPIAGKRTNLYVLKRSKVTKVIINDQNVATGVEYVNSKGETVRVTANKEVILTAGAIANAQLLLL  705 (720)
Q Consensus       638 a~L~~Aa~e~aGVkIi~gt~VtkIl~e~gGrAtGV~v~dt~G~e~tIkAkK~VVVAAGa~~Sp~LLl~  705 (720)
                      ..|.+++ ++.|++|+++++|++|+.+++|+|+||++.+ +|+...|+|+|.||||||++....-|++
T Consensus       217 ~~l~~~~-~~~gv~i~~~~~~~~Li~d~~g~V~Gv~~~~-~~~~~~i~a~~aVilAtGGf~~N~em~~  282 (584)
T PRK12835        217 ARLRLAL-KDAGVPLWLDSPMTELITDPDGAVVGAVVER-EGRTLRIGARRGVILATGGFDHDMDWRK  282 (584)
T ss_pred             HHHHHHH-HhCCceEEeCCEEEEEEECCCCcEEEEEEEe-CCcEEEEEeceeEEEecCcccCCHHHHH
Confidence            3455556 5789999999999999997468999999865 6777889998679999999987554444

>TIGR01373 soxB sarcosine oxidase, beta subunit family, heterotetrameric form

Probab=99.51  E-value=4e-13  Score=147.47  Aligned_cols=62  Identities=21%  Similarity=0.318  Sum_probs=45.5

Q ss_pred             HHHHHHhcCCCeEEEcCeEEEEEEEccCCcEEEEEEEecCCcEEEEEcCcEEEEccCCcchHHHHHHcCCC
Q psy14408        639 YLTPIAGKRTNLYVLKRSKVTKVIINDQNVATGVEYVNSKGETVRVTANKEVILTAGAIANAQLLLLSGIG  709 (720)
Q Consensus       639 ~L~~Aa~e~aGVkIi~gt~VtkIl~e~gGrAtGV~v~dt~G~e~tIkAkK~VVVAAGa~~Sp~LLl~SGIg  709 (720)
                      ++..+.  +.|++++++++|++|+.++++++.+|++.+  |   +++|+ +||||||+ ++..++...|+.
T Consensus       189 l~~~a~--~~Gv~~~~~~~V~~i~~~~~~~~~~v~t~~--g---~i~a~-~vVvaagg-~~~~l~~~~g~~  250 (407)
T TIGR01373       189 YARGAD--RRGVDIIQNCEVTGFIRRDGGRVIGVETTR--G---FIGAK-KVGVAVAG-HSSVVAAMAGFR  250 (407)
T ss_pred             HHHHHH--HCCCEEEeCCEEEEEEEcCCCcEEEEEeCC--c---eEECC-EEEECCCh-hhHHHHHHcCCC
Confidence            444444  789999999999999764256777776644  4   68997 49999998 556667666654

Sarcosine oxidase catalyzes the oxidative demethylation of sarcosine to glycine. The reaction converts tetrahydrofolate to 5,10-methylene-tetrahydrofolate. The enzyme is known in monomeric and heterotetrameric (alpha,beta,gamma,delta) forms.

>PRK12409 D-amino acid dehydrogenase small subunit; Provisional

Probab=99.51  E-value=5.4e-13  Score=146.58  Aligned_cols=35  Identities=20%  Similarity=0.297  Sum_probs=32.7

Q ss_pred             ccEEEECCcHHHHHHHHHHHhcCCCcEEEEccCCCC
Q psy14408        434 FDIIIVGASAAGCVLANRLSEVSSLKVLLIEAGGDT  469 (720)
Q Consensus       434 yDVVIIGSGiAGLvAA~~LAea~G~KVLVLEKG~~~  469 (720)
                      +||||||||++|+++|++||++ |++|+||||+...
T Consensus         2 ~~vvIIGaG~~G~~~A~~La~~-g~~V~vle~~~~~   36 (410)
T PRK12409          2 SHIAVIGAGITGVTTAYALAQR-GYQVTVFDRHRYA   36 (410)
T ss_pred             CEEEEECCCHHHHHHHHHHHHC-CCeEEEEeCCCCC
Confidence            4999999999999999999999 9999999999643

>PRK00711 D-amino acid dehydrogenase small subunit; Validated

Probab=99.50  E-value=6.5e-13  Score=145.70  Aligned_cols=122  Identities=19%  Similarity=0.153  Sum_probs=69.3

Q ss_pred             CcCCcccccccccccchHHHHHHHHHHHHcCCCCCC-----------CCCC-ccccccccccCCccccCcchhHHHHHHH
Q psy14408        574 GTQGYLPVGLFKNKENNIIREIFETSAQELGYPCPK-----------DMND-RYVDVGFAELPGMTRYGLRFSAADAYLT  641 (720)
Q Consensus       574 ~~~G~L~va~~~~~~~~~~~q~llea~rklG~~~~~-----------d~ng-~~~~~G~~~~~~g~~~G~k~~aa~a~L~  641 (720)
                      ...|.+.+......  ....+...+.+++.|++.+.           .+.. .....|..+......... .... ..|.
T Consensus       133 ~~~G~l~~a~~~~~--~~~l~~~~~~~~~~g~~~~~l~~~e~~~~~P~l~~~~~~~~ga~~~p~~g~~~p-~~~~-~~l~  208 (416)
T PRK00711        133 RQGGTLQLFRTQQQ--LDAAAKDIAVLEEAGVPYELLDRDELAAVEPALAGVRHKLVGGLRLPNDETGDC-QLFT-QRLA  208 (416)
T ss_pred             ccCcEEEEECCHHH--HHHHHHHHHHHHHcCCCceecCHHHHHHhCCCccCCCccceeEEECCCcccCCH-HHHH-HHHH
Confidence            44566666654443  34455556667778876541           0000 011223222222111111 1222 2333


Q ss_pred             HHHhcCCCeEEEcCeEEEEEEEccCCcEEEEEEEecCCcEEEEEcCcEEEEccCCcchHHHHHHcCC
Q psy14408        642 PIAGKRTNLYVLKRSKVTKVIINDQNVATGVEYVNSKGETVRVTANKEVILTAGAIANAQLLLLSGI  708 (720)
Q Consensus       642 ~Aa~e~aGVkIi~gt~VtkIl~e~gGrAtGV~v~dt~G~e~tIkAkK~VVVAAGa~~Sp~LLl~SGI  708 (720)
                      .++ ++.|++|+++++|++|..+ ++++.+|++.+  |   +++|+ .||+|+|+ |+..++...|+
T Consensus       209 ~~~-~~~G~~i~~~~~V~~i~~~-~~~~~~v~t~~--~---~~~a~-~VV~a~G~-~~~~l~~~~g~  266 (416)
T PRK00711        209 AMA-EQLGVKFRFNTPVDGLLVE-GGRITGVQTGG--G---VITAD-AYVVALGS-YSTALLKPLGV  266 (416)
T ss_pred             HHH-HHCCCEEEcCCEEEEEEec-CCEEEEEEeCC--c---EEeCC-EEEECCCc-chHHHHHHhCC
Confidence            344 4789999999999999887 66666665432  3   68897 59999997 56677766554

>PTZ00383 malate:quinone oxidoreductase; Provisional

Probab=99.49  E-value=8.1e-13  Score=150.29  Aligned_cols=54  Identities=13%  Similarity=0.172  Sum_probs=43.5

Q ss_pred             CC--eEEEcCeEEEEEEEccCCcEEEEEEEecCCcEEEEEcCcEEEEccCCcchHHHHHHcCCC
Q psy14408        648 TN--LYVLKRSKVTKVIINDQNVATGVEYVNSKGETVRVTANKEVILTAGAIANAQLLLLSGIG  709 (720)
Q Consensus       648 aG--VkIi~gt~VtkIl~e~gGrAtGV~v~dt~G~e~tIkAkK~VVVAAGa~~Sp~LLl~SGIg  709 (720)
                      .|  ++|+++++|++|..+ ++.+.+|++.  .|   +|+|+ .||+|||+ |+..|+.+.|++
T Consensus       228 ~G~~v~i~~~t~V~~I~~~-~~~~~~V~T~--~G---~i~A~-~VVvaAG~-~S~~La~~~Gi~  283 (497)
T PTZ00383        228 PGKKISINLNTEVLNIERS-NDSLYKIHTN--RG---EIRAR-FVVVSACG-YSLLFAQKMGYG  283 (497)
T ss_pred             cCCCEEEEeCCEEEEEEec-CCCeEEEEEC--CC---EEEeC-EEEECcCh-hHHHHHHHhCCC
Confidence            56  889999999999987 5655566543  24   68998 59999997 788999999985

>TIGR01377 soxA_mon sarcosine oxidase, monomeric form

Probab=99.49  E-value=9.3e-13  Score=142.38  Aligned_cols=61  Identities=30%  Similarity=0.340  Sum_probs=43.2

Q ss_pred             HHHHHHhcCCCeEEEcCeEEEEEEEccCCcEEEEEEEecCCcEEEEEcCcEEEEccCCcchHHHHHHcCCC
Q psy14408        639 YLTPIAGKRTNLYVLKRSKVTKVIINDQNVATGVEYVNSKGETVRVTANKEVILTAGAIANAQLLLLSGIG  709 (720)
Q Consensus       639 ~L~~Aa~e~aGVkIi~gt~VtkIl~e~gGrAtGV~v~dt~G~e~tIkAkK~VVVAAGa~~Sp~LLl~SGIg  709 (720)
                      .|..++ ++.|++++.+++|++|..+ ++++ .|++.  +|   +|+|+ .||+|+|+ |+..++...|+.
T Consensus       150 ~l~~~~-~~~g~~~~~~~~V~~i~~~-~~~~-~v~~~--~~---~i~a~-~vV~aaG~-~~~~l~~~~g~~  210 (380)
T TIGR01377       150 ALQELA-EAHGATVRDGTKVVEIEPT-ELLV-TVKTT--KG---SYQAN-KLVVTAGA-WTSKLLSPLGIE  210 (380)
T ss_pred             HHHHHH-HHcCCEEECCCeEEEEEec-CCeE-EEEeC--CC---EEEeC-EEEEecCc-chHHHhhhcccC
Confidence            344444 4789999999999999876 5443 34432  23   68897 59999998 566777776654

Sarcosine oxidase catalyzes the oxidative demethylation of sarcosine to glycine. The reaction converts tetrahydrofolate to 5,10-methylene-tetrahydrofolate. The enzyme is known in monomeric and heterotetrameric (alpha,beta,gamma,delta) forms

>PRK12844 3-ketosteroid-delta-1-dehydrogenase; Reviewed

Probab=99.49  E-value=7.1e-13  Score=152.67  Aligned_cols=65  Identities=18%  Similarity=0.305  Sum_probs=52.3

Q ss_pred             HHHHHHHhcCCCeEEEcCeEEEEEEEccCCcEEEEEEEecCCcEEEEEcCcEEEEccCCcchHHHHHH
Q psy14408        638 AYLTPIAGKRTNLYVLKRSKVTKVIINDQNVATGVEYVNSKGETVRVTANKEVILTAGAIANAQLLLL  705 (720)
Q Consensus       638 a~L~~Aa~e~aGVkIi~gt~VtkIl~e~gGrAtGV~v~dt~G~e~tIkAkK~VVVAAGa~~Sp~LLl~  705 (720)
                      ..|.+.+ ++.|++|+++++|++|+.+ +++|+||++.. +|+.++|+|+|.||||||++....-|++
T Consensus       212 ~~l~~~~-~~~gv~i~~~~~v~~Li~~-~g~v~Gv~~~~-~g~~~~i~A~~aVIlAtGG~~~N~em~~  276 (557)
T PRK12844        212 GRMLEAA-LAAGVPLWTNTPLTELIVE-DGRVVGVVVVR-DGREVLIRARRGVLLASGGFGHNAEMRK  276 (557)
T ss_pred             HHHHHHH-HhCCCEEEeCCEEEEEEEe-CCEEEEEEEEE-CCeEEEEEecceEEEecCCccCCHHHHH
Confidence            3444444 4789999999999999998 89999999875 5767789997679999999988655443

>PRK12837 3-ketosteroid-delta-1-dehydrogenase; Provisional

Probab=99.49  E-value=9.1e-13  Score=150.24  Aligned_cols=64  Identities=20%  Similarity=0.344  Sum_probs=50.8

Q ss_pred             HHHHHHHhcCCCeEEEcCeEEEEEEEccCCcEEEEEEEecCCcEEEEEcCcEEEEccCCcchHHHHH
Q psy14408        638 AYLTPIAGKRTNLYVLKRSKVTKVIINDQNVATGVEYVNSKGETVRVTANKEVILTAGAIANAQLLL  704 (720)
Q Consensus       638 a~L~~Aa~e~aGVkIi~gt~VtkIl~e~gGrAtGV~v~dt~G~e~tIkAkK~VVVAAGa~~Sp~LLl  704 (720)
                      .++..++ ++.|++|+++++|++|+.+ +++|+||++.. +|+.++|+|+|.||||||++....-|+
T Consensus       178 ~l~~~~~-~~~gv~i~~~t~~~~Li~~-~g~v~Gv~~~~-~g~~~~i~A~k~VIlAtGG~~~n~~m~  241 (513)
T PRK12837        178 RFLAALA-RFPNARLRLNTPLVELVVE-DGRVVGAVVER-GGERRRVRARRGVLLAAGGFEQNDDMR  241 (513)
T ss_pred             HHHHHHH-hCCCCEEEeCCEEEEEEec-CCEEEEEEEEE-CCcEEEEEeCceEEEeCCCccCCHHHH
Confidence            3455544 4569999999999999998 89999998865 577788999767999999996544333

>PRK07573 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed

Probab=99.48  E-value=6.9e-13  Score=155.10  Aligned_cols=57  Identities=25%  Similarity=0.367  Sum_probs=46.9

Q ss_pred             HHHHHhcCCCeEEEcCeEEEEEEEccCCcEEEEEEEec-CCcEEEEEcCcEEEEccCCcch
Q psy14408        640 LTPIAGKRTNLYVLKRSKVTKVIINDQNVATGVEYVNS-KGETVRVTANKEVILTAGAIAN  699 (720)
Q Consensus       640 L~~Aa~e~aGVkIi~gt~VtkIl~e~gGrAtGV~v~dt-~G~e~tIkAkK~VVVAAGa~~S  699 (720)
                      |.+.+ ++.|++|++++.|++|+.+ +|+|+||.+.+. +|....|.|+ .||||||++..
T Consensus       176 L~~~~-~~~gV~i~~~t~v~~Li~d-~g~V~GV~~~~~~~g~~~~i~Ak-aVVLATGG~g~  233 (640)
T PRK07573        176 LSRQI-AAGTVKMYTRTEMLDLVVV-DGRARGIVARNLVTGEIERHTAD-AVVLATGGYGN  233 (640)
T ss_pred             HHHHH-HhcCCEEEeceEEEEEEEe-CCEEEEEEEEECCCCcEEEEECC-EEEECCCCccc
Confidence            33344 4789999999999999998 789999999864 5666789997 69999999764

>PRK08274 tricarballylate dehydrogenase; Validated

Probab=99.48  E-value=1.2e-12  Score=146.63  Aligned_cols=68  Identities=22%  Similarity=0.273  Sum_probs=52.8

Q ss_pred             HHHHHHhcCCCeEEEcCeEEEEEEEccCCcEEEEEEEecCCcEEEEEcCcEEEEccCCcchHHHHHHcCCC
Q psy14408        639 YLTPIAGKRTNLYVLKRSKVTKVIINDQNVATGVEYVNSKGETVRVTANKEVILTAGAIANAQLLLLSGIG  709 (720)
Q Consensus       639 ~L~~Aa~e~aGVkIi~gt~VtkIl~e~gGrAtGV~v~dt~G~e~tIkAkK~VVVAAGa~~Sp~LLl~SGIg  709 (720)
                      .|.+.+ ++.|++|+.+++|++|+.+ +++|+||++.+.+|+...|+|+ .||+|+|++.....+++..++
T Consensus       136 ~l~~~~-~~~gv~i~~~t~v~~l~~~-~g~v~gv~~~~~~g~~~~i~a~-~VIlAtGg~~~n~~~~~~~~~  203 (466)
T PRK08274        136 ALYRSA-ERLGVEIRYDAPVTALELD-DGRFVGARAGSAAGGAERIRAK-AVVLAAGGFESNREWLREAWG  203 (466)
T ss_pred             HHHHHH-HHCCCEEEcCCEEEEEEec-CCeEEEEEEEccCCceEEEECC-EEEECCCCCCCCHHHHHhhcC
Confidence            344444 4789999999999999987 7899999986445656788996 699999998877666654443

>PRK12845 3-ketosteroid-delta-1-dehydrogenase; Reviewed

Probab=99.48  E-value=1.2e-12  Score=151.16  Aligned_cols=64  Identities=20%  Similarity=0.258  Sum_probs=50.9

Q ss_pred             HHHHHHhcCCCeEEEcCeEEEEEEEccCCcEEEEEEEecCCcEEEEEcCcEEEEccCCcchHHHHHH
Q psy14408        639 YLTPIAGKRTNLYVLKRSKVTKVIINDQNVATGVEYVNSKGETVRVTANKEVILTAGAIANAQLLLL  705 (720)
Q Consensus       639 ~L~~Aa~e~aGVkIi~gt~VtkIl~e~gGrAtGV~v~dt~G~e~tIkAkK~VVVAAGa~~Sp~LLl~  705 (720)
                      .|.+.+ ++.|++|+++++|++|+.+ +|+|+||.+.+ +|+++.|+|+|.||||+|++....-|++
T Consensus       222 ~L~~~~-~~~Gv~i~~~t~v~~Li~~-~g~V~GV~~~~-~g~~~~i~a~kaVILAtGGf~~n~em~~  285 (564)
T PRK12845        222 GLFAGV-LRAGIPIWTETSLVRLTDD-GGRVTGAVVDH-RGREVTVTARRGVVLAAGGFDHDMEMRW  285 (564)
T ss_pred             HHHHHH-HHCCCEEEecCEeeEEEec-CCEEEEEEEEE-CCcEEEEEcCCEEEEecCCccccHHHHH
Confidence            344444 4789999999999999987 78999998765 5666788887789999999987654433

>PRK06481 fumarate reductase flavoprotein subunit; Validated

Probab=99.47  E-value=8.2e-13  Score=150.37  Aligned_cols=60  Identities=20%  Similarity=0.276  Sum_probs=47.5

Q ss_pred             HHHHHHhcCCCeEEEcCeEEEEEEEccCCcEEEEEEEecCCcEEEEEcCcEEEEccCCcchHH
Q psy14408        639 YLTPIAGKRTNLYVLKRSKVTKVIINDQNVATGVEYVNSKGETVRVTANKEVILTAGAIANAQ  701 (720)
Q Consensus       639 ~L~~Aa~e~aGVkIi~gt~VtkIl~e~gGrAtGV~v~dt~G~e~tIkAkK~VVVAAGa~~Sp~  701 (720)
                      .|.+.+ ++.|++|+++++|++|+.+ +|+|+||++...+|+..+|+|+ .||+|+|++....
T Consensus       195 ~L~~~~-~~~gv~i~~~t~v~~l~~~-~g~V~Gv~~~~~~g~~~~i~a~-~VVlAtGG~~~n~  254 (506)
T PRK06481        195 GLLKNV-QERKIPLFVNADVTKITEK-DGKVTGVKVKINGKETKTISSK-AVVVTTGGFGANK  254 (506)
T ss_pred             HHHHHH-HHcCCeEEeCCeeEEEEec-CCEEEEEEEEeCCCeEEEEecC-eEEEeCCCcccCH
Confidence            344444 4789999999999999987 7899999987645555689997 6999999887643

>PRK11259 solA N-methyltryptophan oxidase; Provisional

Probab=99.45  E-value=1.7e-12  Score=140.07  Aligned_cols=36  Identities=22%  Similarity=0.336  Sum_probs=33.5

Q ss_pred             CcccEEEECCcHHHHHHHHHHHhcCCCcEEEEccCCC
Q psy14408        432 DCFDIIIVGASAAGCVLANRLSEVSSLKVLLIEAGGD  468 (720)
Q Consensus       432 ~eyDVVIIGSGiAGLvAA~~LAea~G~KVLVLEKG~~  468 (720)
                      .++||||||||++|+++|++|+++ |++|+||||+..
T Consensus         2 ~~~dv~IIGgGi~G~s~A~~L~~~-g~~V~lie~~~~   37 (376)
T PRK11259          2 MRYDVIVIGLGSMGSAAGYYLARR-GLRVLGLDRFMP   37 (376)
T ss_pred             CcccEEEECCCHHHHHHHHHHHHC-CCeEEEEecccC
Confidence            468999999999999999999999 999999999853

>PRK06452 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed

Probab=99.44  E-value=1.8e-12  Score=149.56  Aligned_cols=50  Identities=10%  Similarity=0.151  Sum_probs=43.7

Q ss_pred             CCCeEEEcCeEEEEEEEccCCcEEEEEEEec-CCcEEEEEcCcEEEEccCCcc
Q psy14408        647 RTNLYVLKRSKVTKVIINDQNVATGVEYVNS-KGETVRVTANKEVILTAGAIA  698 (720)
Q Consensus       647 ~aGVkIi~gt~VtkIl~e~gGrAtGV~v~dt-~G~e~tIkAkK~VVVAAGa~~  698 (720)
                      +.|++|++++.|++|+.+ +|+|+||.+.+. +|+...|+|+ .||||||++.
T Consensus       148 ~~gv~i~~~~~~~~Li~~-~g~v~Gv~~~~~~~g~~~~i~Ak-aVVLATGG~~  198 (566)
T PRK06452        148 GLNVDFYNEWFSLDLVTD-NKKVVGIVAMQMKTLTPFFFKTK-AVVLATGGMG  198 (566)
T ss_pred             hCCCEEEeCcEEEEEEEE-CCEEEEEEEEECCCCeEEEEEeC-eEEECCCccc
Confidence            579999999999999998 899999998875 4556788996 7999999986

>TIGR01320 mal_quin_oxido malate:quinone-oxidoreductase

Probab=99.44  E-value=3.4e-12  Score=144.85  Aligned_cols=128  Identities=12%  Similarity=-0.024  Sum_probs=72.9

Q ss_pred             cCCcccccccccccchHHHHHHHHHHHHcCCCC--C--C---------CCCC-c---cccccccccCCccccCcchhHHH
Q psy14408        575 TQGYLPVGLFKNKENNIIREIFETSAQELGYPC--P--K---------DMND-R---YVDVGFAELPGMTRYGLRFSAAD  637 (720)
Q Consensus       575 ~~G~L~va~~~~~~~~~~~q~llea~rklG~~~--~--~---------d~ng-~---~~~~G~~~~~~g~~~G~k~~aa~  637 (720)
                      ..|.|.+...+.+  ....+...+.+++.|+..  +  .         +... +   ....|+.++..+...... ....
T Consensus       106 ~~G~L~va~~e~e--~~~L~~~~~~~~~~g~~~~~~~~l~~~el~~~eP~l~~~r~~~~~~gAl~~p~~g~Vdp~-~l~~  182 (483)
T TIGR01320       106 PVPHVSFVHGSDG--VAYLKKRYEALKGHPLFEGMEFSEDPATFAEWLPLMAAGRDFSEPVAANWAAEGTDVDFG-ALTK  182 (483)
T ss_pred             CCCeEEEEEChHH--HHHHHHHHHHHhcCCCccCceEeCCHHHHHHhCCCcccCCCCCCceEEEEeCCCEEECHH-HHHH
Confidence            4566666655544  445555556666665421  1  0         1100 0   012344444433222222 2222


Q ss_pred             HHHHHHHhcCCCeEEEcCeEEEEEEEccCCcEEEEEEEec-CCcEEEEEcCcEEEEccCCcchHHHHHHcCCCC
Q psy14408        638 AYLTPIAGKRTNLYVLKRSKVTKVIINDQNVATGVEYVNS-KGETVRVTANKEVILTAGAIANAQLLLLSGIGP  710 (720)
Q Consensus       638 a~L~~Aa~e~aGVkIi~gt~VtkIl~e~gGrAtGV~v~dt-~G~e~tIkAkK~VVVAAGa~~Sp~LLl~SGIgp  710 (720)
                      +++..+.  +.|++|+++++|++|+.++++.+ .|.+.++ .|+..+|+|+ .||+|||+ |+..|+.+.|+..
T Consensus       183 aL~~~a~--~~Gv~i~~~t~V~~i~~~~~~~v-~v~~~~~~~g~~~~i~A~-~VV~AAG~-~s~~La~~~Gi~~  251 (483)
T TIGR01320       183 QLLGYLV--QNGTTIRFGHEVRNLKRQSDGSW-TVTVKNTRTGGKRTLNTR-FVFVGAGG-GALPLLQKSGIPE  251 (483)
T ss_pred             HHHHHHH--hCCCEEEeCCEEEEEEEcCCCeE-EEEEeeccCCceEEEECC-EEEECCCc-chHHHHHHcCCCc
Confidence            3444444  67999999999999987623333 3444332 3444578997 59999997 7888999999864

This membrane-associated enzyme is an alternative to the better-known NAD-dependent malate dehydrogenase as part of the TCA cycle. The reduction of a quinone rather than NAD+ makes the reaction essentially irreversible in the direction of malate oxidation to oxaloacetate. Both forms of malate dehydrogenase are active in E. coli; disruption of this form causes less phenotypic change. In some bacteria, this form is the only or the more important malate dehydrogenase.

>COG0579 Predicted dehydrogenase [General function prediction only]

Probab=99.44  E-value=2.5e-12  Score=143.19  Aligned_cols=208  Identities=19%  Similarity=0.107  Sum_probs=118.3

Q ss_pred             CcccEEEECCcHHHHHHHHHHHhcCC--CcEEEEccCCCCCCCcccCCccccccccccccccccccccccccccccccee
Q psy14408        432 DCFDIIIVGASAAGCVLANRLSEVSS--LKVLLIEAGGDTPIHSRIPGMSSVLSLSEFDHAYLAEPSQFAGLGVRNARIK  509 (720)
Q Consensus       432 ~eyDVVIIGSGiAGLvAA~~LAea~G--~KVLVLEKG~~~~~ss~~Pg~~~~~~~~~l~~~y~s~p~~~g~l~l~~~~i~  509 (720)
                      .++||||||||+.|+++|+.|++. +  ++|+||||...++..+.-  .                  +.+   +-..++.
T Consensus         2 ~~~DvvIIGgGI~G~a~a~~Ls~~-~p~~~V~llEk~~~~a~~sS~--~------------------NSg---viHag~~   57 (429)
T COG0579           2 MDYDVVIIGGGIMGAATAYELSEY-EPDLSVALLEKEDGVAQESSS--N------------------NSG---VIHAGLY   57 (429)
T ss_pred             CceeEEEECCcHHHHHHHHHHHHh-CCCceEEEEEccCcccccccc--C------------------ccc---ceecccc
Confidence            578999999999999999999998 6  999999998665332110  0                  000   0000000


Q ss_pred             eccccccCCcccccchhhhcCCchhHHHHHHhcCCCCChhHHHHHHHhhhhchhhhccccccccCcCCcccccccccccc
Q psy14408        510 ITAGKGLGGSSAVQNILYQRGTSYDYENFAKLGYNGWGYDETLKYFVKSEDYRSVIYNESKAVHGTQGYLPVGLFKNKEN  589 (720)
Q Consensus       510 ~~~G~~lGGgStvN~~~~~r~s~~d~~eWae~g~~dWsydellpyF~s~e~~~~~sld~d~~v~~~~G~L~va~~~~~~~  589 (720)
                      ...+       ....-++    ......|.             .+.++..      .     -+...|.+.++..+.+  
T Consensus        58 y~p~-------slka~l~----~~g~~~~~-------------~~~kq~~------~-----~f~~~g~l~vA~~e~e--  100 (429)
T COG0579          58 YTPG-------SLKAKLC----VAGNINEF-------------AICKQLG------I-----PFINCGKLSVATGEEE--  100 (429)
T ss_pred             CCCc-------chhhHHH----HHHHHHHH-------------HHHHHhC------C-----cccccCeEEEEEChHH--
Confidence            1000       0001111    11111111             1111111      0     1222366777666665  


Q ss_pred             hHHHHHHHHHHHHcCCCCC-----------CCCCCccccccccccCCccccCcchhHHHHHHHHHHhcCCCeEEEcCeEE
Q psy14408        590 NIIREIFETSAQELGYPCP-----------KDMNDRYVDVGFAELPGMTRYGLRFSAADAYLTPIAGKRTNLYVLKRSKV  658 (720)
Q Consensus       590 ~~~~q~llea~rklG~~~~-----------~d~ng~~~~~G~~~~~~g~~~G~k~~aa~a~L~~Aa~e~aGVkIi~gt~V  658 (720)
                      ...++.+.+.+++.|+...           ++..... ..|..+.+.+....... ...+++..+.  +.|++|+.+++|
T Consensus       101 ~~~L~~l~~~~~~ngv~~~~~ld~~~i~~~eP~l~~~-~~aal~~p~~giV~~~~-~t~~l~e~a~--~~g~~i~ln~eV  176 (429)
T COG0579         101 VERLEKLYERGKANGVFDLEILDKEEIKELEPLLNEG-AVAALLVPSGGIVDPGE-LTRALAEEAQ--ANGVELRLNTEV  176 (429)
T ss_pred             HHHHHHHHHHHhhCCCcceeecCHHHHHhhCcccccc-ceeeEEcCCCceEcHHH-HHHHHHHHHH--HcCCEEEecCee
Confidence            5677777788888777621           1111212 33444444333322222 2334555555  679999999999


Q ss_pred             EEEEEccCCcEEEEEEEecCCcEEEEEcCcEEEEccCCcchHHHHHHcCCCC
Q psy14408        659 TKVIINDQNVATGVEYVNSKGETVRVTANKEVILTAGAIANAQLLLLSGIGP  710 (720)
Q Consensus       659 tkIl~e~gGrAtGV~v~dt~G~e~tIkAkK~VVVAAGa~~Sp~LLl~SGIgp  710 (720)
                      ++|+.+++| +.-+.+.  +|++. ++|+ .||.|||. .+..|++++|+..
T Consensus       177 ~~i~~~~dg-~~~~~~~--~g~~~-~~ak-~Vin~AGl-~Ad~la~~~g~~~  222 (429)
T COG0579         177 TGIEKQSDG-VFVLNTS--NGEET-LEAK-FVINAAGL-YADPLAQMAGIPE  222 (429)
T ss_pred             eEEEEeCCc-eEEEEec--CCcEE-EEee-EEEECCch-hHHHHHHHhCCCc
Confidence            999987333 3333332  46544 9997 59999996 7889999999987

>PRK08958 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed

Probab=99.43  E-value=2.2e-12  Score=149.58  Aligned_cols=58  Identities=16%  Similarity=0.239  Sum_probs=46.3

Q ss_pred             HHHHHhcCCCeEEEcCeEEEEEEEccCCcEEEEEEEec-CCcEEEEEcCcEEEEccCCcch
Q psy14408        640 LTPIAGKRTNLYVLKRSKVTKVIINDQNVATGVEYVNS-KGETVRVTANKEVILTAGAIAN  699 (720)
Q Consensus       640 L~~Aa~e~aGVkIi~gt~VtkIl~e~gGrAtGV~v~dt-~G~e~tIkAkK~VVVAAGa~~S  699 (720)
                      |...+ ++.|++|++++.|++|+.+++|+|.||...+. +|+...|+|+ .||||||++..
T Consensus       149 L~~~~-~~~gi~i~~~~~~~~Li~~~~g~v~Gv~~~~~~~g~~~~i~Ak-aVILATGG~~~  207 (588)
T PRK08958        149 LYQQN-LKNHTTIFSEWYALDLVKNQDGAVVGCTAICIETGEVVYFKAR-ATVLATGGAGR  207 (588)
T ss_pred             HHHHh-hhcCCEEEeCcEEEEEEECCCCEEEEEEEEEcCCCcEEEEEcC-eEEECCCCccc
Confidence            33333 36799999999999999853689999998653 5777789996 79999999764

>PRK11728 hydroxyglutarate oxidase; Provisional

Probab=99.43  E-value=4.3e-12  Score=139.14  Aligned_cols=61  Identities=18%  Similarity=0.179  Sum_probs=44.6

Q ss_pred             HHHHHHhcCCCeEEEcCeEEEEEEEccCCcEEEEEEEecCCcEEEEEcCcEEEEccCCcchHHHHHHcCCC
Q psy14408        639 YLTPIAGKRTNLYVLKRSKVTKVIINDQNVATGVEYVNSKGETVRVTANKEVILTAGAIANAQLLLLSGIG  709 (720)
Q Consensus       639 ~L~~Aa~e~aGVkIi~gt~VtkIl~e~gGrAtGV~v~dt~G~e~tIkAkK~VVVAAGa~~Sp~LLl~SGIg  709 (720)
                      .|.+++ ++.|++|+++++|++|..+ ++++ +|++.  +|   +++|+ .||+|+|+ |+..++...|+.
T Consensus       154 aL~~~~-~~~Gv~i~~~~~V~~i~~~-~~~~-~V~~~--~g---~i~ad-~vV~A~G~-~s~~l~~~~g~~  214 (393)
T PRK11728        154 AMAELI-QARGGEIRLGAEVTALDEH-ANGV-VVRTT--QG---EYEAR-TLINCAGL-MSDRLAKMAGLE  214 (393)
T ss_pred             HHHHHH-HhCCCEEEcCCEEEEEEec-CCeE-EEEEC--CC---EEEeC-EEEECCCc-chHHHHHHhCCC
Confidence            344444 4789999999999999876 4443 34432  24   68997 59999997 788888888875

>COG0578 GlpA Glycerol-3-phosphate dehydrogenase [Energy production and conversion]

Probab=99.43  E-value=3.8e-12  Score=144.59  Aligned_cols=87  Identities=23%  Similarity=0.242  Sum_probs=66.4

Q ss_pred             cccccccCCccccCcchhHHHHHHHHHHhcCCCeEEEcCeEEEEEEEccCCcEEEEEEEec-CCcEEEEEcCcEEEEccC
Q psy14408        617 DVGFAELPGMTRYGLRFSAADAYLTPIAGKRTNLYVLKRSKVTKVIINDQNVATGVEYVNS-KGETVRVTANKEVILTAG  695 (720)
Q Consensus       617 ~~G~~~~~~g~~~G~k~~aa~a~L~~Aa~e~aGVkIi~gt~VtkIl~e~gGrAtGV~v~dt-~G~e~tIkAkK~VVVAAG  695 (720)
                      ..|...+..+.....+...  ..+++|.  +.|+++++.++|++++.+ ++ ++||+++|. +|+++.|+|+ .||.|||
T Consensus       150 l~ga~~y~D~~vddaRLv~--~~a~~A~--~~Ga~il~~~~v~~~~re-~~-v~gV~~~D~~tg~~~~ira~-~VVNAaG  222 (532)
T COG0578         150 LKGAFRYPDGVVDDARLVA--ANARDAA--EHGAEILTYTRVESLRRE-GG-VWGVEVEDRETGETYEIRAR-AVVNAAG  222 (532)
T ss_pred             ccceEEEccceechHHHHH--HHHHHHH--hcccchhhcceeeeeeec-CC-EEEEEEEecCCCcEEEEEcC-EEEECCC
Confidence            4445555554444444322  3455666  899999999999999998 67 999999986 6888999997 5888888


Q ss_pred             CcchHHHHHHcCCCCc
Q psy14408        696 AIANAQLLLLSGIGPK  711 (720)
Q Consensus       696 a~~Sp~LLl~SGIgpk  711 (720)
                      . |+..++...|..+.
T Consensus       223 p-W~d~i~~~~~~~~~  237 (532)
T COG0578         223 P-WVDEILEMAGLEQS  237 (532)
T ss_pred             c-cHHHHHHhhcccCC
Confidence            6 89999999877653

>TIGR03364 HpnW_proposed FAD dependent oxidoreductase TIGR03364

Probab=99.43  E-value=2e-12  Score=139.70  Aligned_cols=34  Identities=35%  Similarity=0.484  Sum_probs=32.0

Q ss_pred             ccEEEECCcHHHHHHHHHHHhcCCCcEEEEccCCC
Q psy14408        434 FDIIIVGASAAGCVLANRLSEVSSLKVLLIEAGGD  468 (720)
Q Consensus       434 yDVVIIGSGiAGLvAA~~LAea~G~KVLVLEKG~~  468 (720)
                      +||||||||++|+++|++|+++ |++|+||||+..
T Consensus         1 ~dv~IIG~Gi~G~s~A~~L~~~-G~~V~vle~~~~   34 (365)
T TIGR03364         1 YDLIIVGAGILGLAHAYAAARR-GLSVTVIERSSR   34 (365)
T ss_pred             CCEEEECCCHHHHHHHHHHHHC-CCeEEEEeCCCC
Confidence            5999999999999999999999 999999999853

This clade of FAD dependent oxidoreductases (members of the pfam01266 family) is syntenically associated with a family of proposed phosphonatase-like enzymes (TIGR03351) and is also found (less frequently) in association with phosphonate transporter components. A likely role for this enzyme involves the oxidative deamination of an aminophosphonate differring slightly from 2-aminoethylphosphonate, possibly 1-hydroxy-2-aminoethylphosphonate (see the comments for TIGR03351). Many members of the larger FAD dependent oxidoreductase family act as amino acid oxidative deaminases.

>TIGR01813 flavo_cyto_c flavocytochrome c

Probab=99.41  E-value=7e-12  Score=139.46  Aligned_cols=64  Identities=23%  Similarity=0.268  Sum_probs=48.4

Q ss_pred             HHHHHHhcCCCeEEEcCeEEEEEEEccCCcEEEEEEEecCCcEEEEEcCcEEEEccCCcchHHHHH
Q psy14408        639 YLTPIAGKRTNLYVLKRSKVTKVIINDQNVATGVEYVNSKGETVRVTANKEVILTAGAIANAQLLL  704 (720)
Q Consensus       639 ~L~~Aa~e~aGVkIi~gt~VtkIl~e~gGrAtGV~v~dt~G~e~tIkAkK~VVVAAGa~~Sp~LLl  704 (720)
                      .|.+.+ ++.|++|+++++|++|+.+++++++||++.+.+|....++++ .||+|+|++....-|+
T Consensus       135 ~l~~~~-~~~gv~i~~~~~v~~l~~~~~g~v~Gv~~~~~~g~~~~~~a~-~VVlAtGg~~~n~~m~  198 (439)
T TIGR01813       135 KLYKKA-KKEGIDTRLNSKVEDLIQDDQGTVVGVVVKGKGKGIYIKAAK-AVVLATGGFGSNKEMI  198 (439)
T ss_pred             HHHHHH-HHcCCEEEeCCEeeEeEECCCCcEEEEEEEeCCCeEEEEecc-eEEEecCCCCCCHHHH
Confidence            344444 478999999999999998646789999988645554567886 6999999887644333

This model describes a family of redox proteins related to the succinate dehydrogenases and fumarate reductases of E. coli, mitochondria, and other well-characterized systems. A member of this family from Shewanella frigidimarina NCIMB400 is characterized as a water-soluble periplasmic protein with four heme groups, a non-covalently bound FAD, and essentially unidirectional fumarate reductase activity. At least seven distinct members of this family are found in Shewanella oneidensis, a species able to use a wide variety of pathways for respiraton.

>PLN02464 glycerol-3-phosphate dehydrogenase

Probab=99.40  E-value=1.1e-11  Score=144.70  Aligned_cols=66  Identities=20%  Similarity=0.234  Sum_probs=52.5

Q ss_pred             HHHHHHHhcCCCeEEEcCeEEEEEEEcc-CCcEEEEEEEec-CCcEEEEEcCcEEEEccCCcchHHHHHHcC
Q psy14408        638 AYLTPIAGKRTNLYVLKRSKVTKVIIND-QNVATGVEYVNS-KGETVRVTANKEVILTAGAIANAQLLLLSG  707 (720)
Q Consensus       638 a~L~~Aa~e~aGVkIi~gt~VtkIl~e~-gGrAtGV~v~dt-~G~e~tIkAkK~VVVAAGa~~Sp~LLl~SG  707 (720)
                      .++..+.  +.|++|+++++|++|+.++ +++++||++.+. +|++++|+|+ .||+|||+ |+..++...|
T Consensus       237 al~~~A~--~~Ga~i~~~~~V~~l~~~~~~g~v~gV~v~d~~tg~~~~i~a~-~VVnAaGa-ws~~l~~~~g  304 (627)
T PLN02464        237 ALACTAA--LAGAAVLNYAEVVSLIKDESTGRIVGARVRDNLTGKEFDVYAK-VVVNAAGP-FCDEVRKMAD  304 (627)
T ss_pred             HHHHHHH--hCCcEEEeccEEEEEEEecCCCcEEEEEEEECCCCcEEEEEeC-EEEECCCH-hHHHHHHhcc
Confidence            4555555  7899999999999998863 378999998764 4555679997 59999997 7888888775

>PLN00128 Succinate dehydrogenase [ubiquinone] flavoprotein subunit

Probab=99.40  E-value=4.8e-12  Score=147.94  Aligned_cols=52  Identities=21%  Similarity=0.314  Sum_probs=44.1

Q ss_pred             CCCeEEEcCeEEEEEEEccCCcEEEEEEEec-CCcEEEEEcCcEEEEccCCcch
Q psy14408        647 RTNLYVLKRSKVTKVIINDQNVATGVEYVNS-KGETVRVTANKEVILTAGAIAN  699 (720)
Q Consensus       647 ~aGVkIi~gt~VtkIl~e~gGrAtGV~v~dt-~G~e~tIkAkK~VVVAAGa~~S  699 (720)
                      +.|++|++++.|++|+.+++|+|.||.+.+. +|+...|+|+ .||||+|++..
T Consensus       199 ~~gv~i~~~~~~~~Li~~~~g~v~Gv~~~~~~~g~~~~i~Ak-aVILATGG~g~  251 (635)
T PLN00128        199 KHNTQFFVEYFALDLIMDSDGACQGVIALNMEDGTLHRFRAH-STILATGGYGR  251 (635)
T ss_pred             hCCCEEEEeeEEEEEEEcCCCEEEEEEEEEcCCCeEEEEEcC-eEEECCCCCcc
Confidence            6799999999999998863589999998764 5777789997 69999999864

>PTZ00139 Succinate dehydrogenase [ubiquinone] flavoprotein subunit; Provisional

Probab=99.40  E-value=4e-12  Score=148.13  Aligned_cols=59  Identities=14%  Similarity=0.193  Sum_probs=46.7

Q ss_pred             HHHHHHhcCCCeEEEcCeEEEEEEEccCCcEEEEEEEec-CCcEEEEEcCcEEEEccCCcch
Q psy14408        639 YLTPIAGKRTNLYVLKRSKVTKVIINDQNVATGVEYVNS-KGETVRVTANKEVILTAGAIAN  699 (720)
Q Consensus       639 ~L~~Aa~e~aGVkIi~gt~VtkIl~e~gGrAtGV~v~dt-~G~e~tIkAkK~VVVAAGa~~S  699 (720)
                      .|.+.+ ++.|++|++++.|++|+.+++|+|.||.+.+. +|+...|+|+ .||||+|++..
T Consensus       171 ~L~~~a-~~~gv~i~~~~~~~~Li~~~~g~v~Gv~~~~~~~g~~~~i~Ak-aVVLATGG~~~  230 (617)
T PTZ00139        171 TLYGQS-LKYDCNFFIEYFALDLIMDEDGECRGVIAMSMEDGSIHRFRAH-YTVIATGGYGR  230 (617)
T ss_pred             HHHHHH-HhCCCEEEeceEEEEEEECCCCEEEEEEEEECCCCeEEEEECC-cEEEeCCCCcc
Confidence            344444 47899999999999999832789999988653 5777789997 69999999853

>PRK06175 L-aspartate oxidase; Provisional

Probab=99.39  E-value=5e-12  Score=141.40  Aligned_cols=56  Identities=21%  Similarity=0.436  Sum_probs=44.0

Q ss_pred             HHHHHHhcCCCeEEEcCeEEEEEEEccCCcEEEEEEEecCCcEEEEEcCcEEEEccCCcc
Q psy14408        639 YLTPIAGKRTNLYVLKRSKVTKVIINDQNVATGVEYVNSKGETVRVTANKEVILTAGAIA  698 (720)
Q Consensus       639 ~L~~Aa~e~aGVkIi~gt~VtkIl~e~gGrAtGV~v~dt~G~e~tIkAkK~VVVAAGa~~  698 (720)
                      ++..++ ++.|++|++++.|++|+.+ +++|.||.+.+ +|+...|+|+ .||||+|++.
T Consensus       134 L~~~~~-~~~gV~i~~~t~v~~Li~~-~~~v~Gv~~~~-~g~~~~i~Ak-~VILAtGG~~  189 (433)
T PRK06175        134 LLKKVK-KRKNITIIENCYLVDIIEN-DNTCIGAICLK-DNKQINIYSK-VTILATGGIG  189 (433)
T ss_pred             HHHHHH-hcCCCEEEECcEeeeeEec-CCEEEEEEEEE-CCcEEEEEcC-eEEEccCccc
Confidence            343443 3569999999999999987 78899987665 4555679996 6999999975

>PRK07843 3-ketosteroid-delta-1-dehydrogenase; Reviewed

Probab=99.39  E-value=7.8e-12  Score=144.09  Aligned_cols=66  Identities=24%  Similarity=0.321  Sum_probs=53.4

Q ss_pred             HHHHHHHhcCCCeEEEcCeEEEEEEEccCCcEEEEEEEecCCcEEEEEcCcEEEEccCCcchHHHHHHc
Q psy14408        638 AYLTPIAGKRTNLYVLKRSKVTKVIINDQNVATGVEYVNSKGETVRVTANKEVILTAGAIANAQLLLLS  706 (720)
Q Consensus       638 a~L~~Aa~e~aGVkIi~gt~VtkIl~e~gGrAtGV~v~dt~G~e~tIkAkK~VVVAAGa~~Sp~LLl~S  706 (720)
                      ..|.+.+ ++.|++|+++++|++|+.+ +++|+||++.+ +|+...|+|++.||||||++.....|++.
T Consensus       212 ~~L~~~~-~~~gv~v~~~t~v~~l~~~-~g~v~Gv~~~~-~g~~~~i~A~~~VIlAtGG~~~n~~m~~~  277 (557)
T PRK07843        212 AGLRIGL-QRAGVPVLLNTPLTDLYVE-DGRVTGVHAAE-SGEPQLIRARRGVILASGGFEHNEQMRAK  277 (557)
T ss_pred             HHHHHHH-HcCCCEEEeCCEEEEEEEe-CCEEEEEEEEe-CCcEEEEEeceeEEEccCCcCcCHHHHHH
Confidence            3445555 5789999999999999988 78999999875 56677899976799999999887666554

>PRK09078 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed

Probab=99.39  E-value=5.9e-12  Score=146.26  Aligned_cols=59  Identities=24%  Similarity=0.262  Sum_probs=46.8

Q ss_pred             HHHHHHhcCCCeEEEcCeEEEEEEEccCCcEEEEEEEec-CCcEEEEEcCcEEEEccCCcch
Q psy14408        639 YLTPIAGKRTNLYVLKRSKVTKVIINDQNVATGVEYVNS-KGETVRVTANKEVILTAGAIAN  699 (720)
Q Consensus       639 ~L~~Aa~e~aGVkIi~gt~VtkIl~e~gGrAtGV~v~dt-~G~e~tIkAkK~VVVAAGa~~S  699 (720)
                      .|.+.+ ++.|++|++++.|++|+.+++|+|.||.+.+. +|+...|.|+ .||||||++..
T Consensus       154 ~L~~~~-~~~gi~i~~~~~v~~Li~~~~g~v~Gv~~~~~~~g~~~~i~Ak-aVVLATGG~~~  213 (598)
T PRK09078        154 TLYQQS-LKHNAEFFIEYFALDLIMDDGGVCRGVVAWNLDDGTLHRFRAH-MVVLATGGYGR  213 (598)
T ss_pred             HHHHHH-hhcCCEEEEeEEEEEEEEcCCCEEEEEEEEECCCCcEEEEEcC-EEEECCCCCcc
Confidence            344433 36899999999999999873479999998653 5766789996 69999999864

>PRK05945 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed

Probab=99.38  E-value=5.6e-12  Score=145.76  Aligned_cols=57  Identities=23%  Similarity=0.308  Sum_probs=45.3

Q ss_pred             HHHHHHhcCCCeEEEcCeEEEEEEEccCCcEEEEEEEec-CCcEEEEEcCcEEEEccCCcc
Q psy14408        639 YLTPIAGKRTNLYVLKRSKVTKVIINDQNVATGVEYVNS-KGETVRVTANKEVILTAGAIA  698 (720)
Q Consensus       639 ~L~~Aa~e~aGVkIi~gt~VtkIl~e~gGrAtGV~v~dt-~G~e~tIkAkK~VVVAAGa~~  698 (720)
                      .|.+.+ ++.|++|++++.|++|+.+ +|+|.||...+. +|+...|+|+ .||+|+|++.
T Consensus       140 ~L~~~~-~~~gi~i~~~t~v~~L~~~-~g~v~Gv~~~~~~~g~~~~i~Ak-aVVlATGG~~  197 (575)
T PRK05945        140 ELVNNL-RRYGVTIYDEWYVMRLILE-DNQAKGVVMYHIADGRLEVVRAK-AVMFATGGYG  197 (575)
T ss_pred             HHHHHH-hhCCCEEEeCcEEEEEEEE-CCEEEEEEEEEcCCCeEEEEECC-EEEECCCCCc
Confidence            344434 3679999999999999988 889999987543 4655678996 6999999975

>PRK12842 putative succinate dehydrogenase; Reviewed

Probab=99.38  E-value=1.4e-11  Score=142.38  Aligned_cols=63  Identities=17%  Similarity=0.316  Sum_probs=48.9

Q ss_pred             HHHHHhcCCCeEEEcCeEEEEEEEccCCcEEEEEEEecCCcEEEEEcCcEEEEccCCcchHHHHHH
Q psy14408        640 LTPIAGKRTNLYVLKRSKVTKVIINDQNVATGVEYVNSKGETVRVTANKEVILTAGAIANAQLLLL  705 (720)
Q Consensus       640 L~~Aa~e~aGVkIi~gt~VtkIl~e~gGrAtGV~v~dt~G~e~tIkAkK~VVVAAGa~~Sp~LLl~  705 (720)
                      |.+.+ ++.|++|++++.|++|+.+ +++|+||++.+ .+++..|+|+|.||||+|++....-+++
T Consensus       220 L~~~~-~~~Gv~i~~~~~v~~l~~~-~g~V~GV~~~~-~~~~~~i~a~k~VVlAtGg~~~n~~~~~  282 (574)
T PRK12842        220 LAKSA-LDLGIPILTGTPARELLTE-GGRVVGARVID-AGGERRITARRGVVLACGGFSHDLARIA  282 (574)
T ss_pred             HHHHH-HhCCCEEEeCCEEEEEEee-CCEEEEEEEEc-CCceEEEEeCCEEEEcCCCccchHHHHH
Confidence            33434 4789999999999999998 88999999876 3344568886679999999875554443

>PRK08641 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed

Probab=99.37  E-value=1e-11  Score=144.10  Aligned_cols=50  Identities=16%  Similarity=0.201  Sum_probs=41.4

Q ss_pred             CeEEEcCeEEEEEEEccCCcEEEEEEEec-CCcEEEEEcCcEEEEccCCcch
Q psy14408        649 NLYVLKRSKVTKVIINDQNVATGVEYVNS-KGETVRVTANKEVILTAGAIAN  699 (720)
Q Consensus       649 GVkIi~gt~VtkIl~e~gGrAtGV~v~dt-~G~e~tIkAkK~VVVAAGa~~S  699 (720)
                      +++|++++.|++|+.+++|+|.||.+.+. +|+...|+|+ .||||||++..
T Consensus       151 ~i~i~~~~~~~~Li~~~~g~v~Gv~~~~~~~g~~~~i~Ak-aVILATGG~~~  201 (589)
T PRK08641        151 LVTKYEGWEFLGAVLDDEGVCRGIVAQDLFTMEIESFPAD-AVIMATGGPGI  201 (589)
T ss_pred             CcEEEeeEEEEEEEECCCCEEEEEEEEECCCCcEEEEECC-EEEECCCCCcC
Confidence            38999999999999853689999999875 4555678896 79999999864

>PTZ00306 NADH-dependent fumarate reductase; Provisional

Probab=99.37  E-value=7.1e-12  Score=155.29  Aligned_cols=53  Identities=25%  Similarity=0.465  Sum_probs=44.7

Q ss_pred             CCeEEEcCeEEEEEEEcc-----C---CcEEEEEEEec---CCcEEEEEcCcEEEEccCCcchHH
Q psy14408        648 TNLYVLKRSKVTKVIIND-----Q---NVATGVEYVNS---KGETVRVTANKEVILTAGAIANAQ  701 (720)
Q Consensus       648 aGVkIi~gt~VtkIl~e~-----g---GrAtGV~v~dt---~G~e~tIkAkK~VVVAAGa~~Sp~  701 (720)
                      .|++|+++++|++|+.++     +   ++|+||++++.   +|+...|+|+ .||||||++....
T Consensus       560 ~gv~i~~~t~~~~LI~d~~~~~~G~~~~~V~Gv~~~~~~~~~g~~~~i~Ak-aVILATGGf~~N~  623 (1167)
T PTZ00306        560 GRVTIMTETTVTSLLSESSARPDGVREIRVTGVRYKQASDASGQVMDLLAD-AVILATGGFSNDH  623 (1167)
T ss_pred             CCcEEEECCEEEEEEecCCcccCCCccceEEEEEEEecccCCCcEEEEEec-eEEEecCCcccCc
Confidence            599999999999999862     1   38999999875   6777789996 6999999998754

>PRK08626 fumarate reductase flavoprotein subunit; Provisional

Probab=99.36  E-value=1e-11  Score=145.77  Aligned_cols=56  Identities=16%  Similarity=0.170  Sum_probs=46.5

Q ss_pred             HHHHHhcCCCeEEEcCeEEEEEEEccCCcEEEEEEEec-CCcEEEEEcCcEEEEccCCcc
Q psy14408        640 LTPIAGKRTNLYVLKRSKVTKVIINDQNVATGVEYVNS-KGETVRVTANKEVILTAGAIA  698 (720)
Q Consensus       640 L~~Aa~e~aGVkIi~gt~VtkIl~e~gGrAtGV~v~dt-~G~e~tIkAkK~VVVAAGa~~  698 (720)
                      |...+ ++.|++|++++.|++|+.+ +|+|.||.+.+. +|....|.|+ .||||||++.
T Consensus       164 L~~~~-~~~gv~i~~~~~~~~Li~~-~g~v~Gv~~~~~~~G~~~~i~Ak-aVVLATGG~g  220 (657)
T PRK08626        164 VDNEA-IKLGVPVHDRKEAIALIHD-GKRCYGAVVRCLITGELRAYVAK-ATLIATGGYG  220 (657)
T ss_pred             HHHHH-HhCCCEEEeeEEEEEEEEE-CCEEEEEEEEEcCCCcEEEEEcC-eEEECCCccc
Confidence            33434 4789999999999999998 899999999864 6776788996 6999999876

>PRK07804 L-aspartate oxidase; Provisional

Probab=99.36  E-value=1.6e-11  Score=141.16  Aligned_cols=58  Identities=17%  Similarity=0.241  Sum_probs=44.3

Q ss_pred             HHHHHHhcCCCeEEEcCeEEEEEEEccCCcEEEEEEEe----cCCcEEEEEcCcEEEEccCCcc
Q psy14408        639 YLTPIAGKRTNLYVLKRSKVTKVIINDQNVATGVEYVN----SKGETVRVTANKEVILTAGAIA  698 (720)
Q Consensus       639 ~L~~Aa~e~aGVkIi~gt~VtkIl~e~gGrAtGV~v~d----t~G~e~tIkAkK~VVVAAGa~~  698 (720)
                      .|.+++ ++.|++|++++.|++|+.+++|+|.||.+.+    ..++...|+|+ .||+|+|++.
T Consensus       149 ~L~~~~-~~~gV~i~~~~~v~~Li~~~~g~v~Gv~~~~~~~~~~~g~~~i~Ak-~VIlATGG~~  210 (541)
T PRK07804        149 ALDAAV-RADPLDIREHALALDLLTDGTGAVAGVTLHVLGEGSPDGVGAVHAP-AVVLATGGLG  210 (541)
T ss_pred             HHHHHH-HhCCCEEEECeEeeeeEEcCCCeEEEEEEEeccCCCCCcEEEEEcC-eEEECCCCCC
Confidence            444444 4778999999999999987347999998873    12334678996 6999999975

>PRK07057 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed

Probab=99.35  E-value=4.5e-11  Score=138.80  Aligned_cols=53  Identities=11%  Similarity=0.171  Sum_probs=43.6

Q ss_pred             cCCCeEEEcCeEEEEEEEccCCcEEEEEEEec-CCcEEEEEcCcEEEEccCCcch
Q psy14408        646 KRTNLYVLKRSKVTKVIINDQNVATGVEYVNS-KGETVRVTANKEVILTAGAIAN  699 (720)
Q Consensus       646 e~aGVkIi~gt~VtkIl~e~gGrAtGV~v~dt-~G~e~tIkAkK~VVVAAGa~~S  699 (720)
                      .+.|++|++++.|++|+.+++|+|.||.+.+. +|+...|+|+ .||+|+|++..
T Consensus       159 ~~~gi~i~~~~~~~~Li~~~~g~v~Gv~~~~~~~g~~~~i~Ak-aVILATGG~~~  212 (591)
T PRK07057        159 VAAKTQFFVEWMALDLIRDADGDVLGVTALEMETGDVYILEAK-TTLFATGGAGR  212 (591)
T ss_pred             HhcCCEEEeCcEEEEEEEcCCCeEEEEEEEEcCCCeEEEEECC-eEEECCCCccc
Confidence            37899999999999999863589999998754 4655678886 69999999753

>PRK05257 malate:quinone oxidoreductase; Validated

Probab=99.35  E-value=2.4e-11  Score=138.28  Aligned_cols=68  Identities=25%  Similarity=0.237  Sum_probs=47.0

Q ss_pred             HHHHHHhcCCC-eEEEcCeEEEEEEEccCCcEEEEEEEec-CCcEEEEEcCcEEEEccCCcchHHHHHHcCCCC
Q psy14408        639 YLTPIAGKRTN-LYVLKRSKVTKVIINDQNVATGVEYVNS-KGETVRVTANKEVILTAGAIANAQLLLLSGIGP  710 (720)
Q Consensus       639 ~L~~Aa~e~aG-VkIi~gt~VtkIl~e~gGrAtGV~v~dt-~G~e~tIkAkK~VVVAAGa~~Sp~LLl~SGIgp  710 (720)
                      .|.+++ ++.| ++|+++++|++|..++++++ .|.+.++ .|+..+|+|+ .||+|||+ |+..++..+|+..
T Consensus       188 aL~~~a-~~~Ggv~i~~~teV~~I~~~~dg~~-~v~~~~~~~G~~~~i~A~-~VVvaAGg-~s~~L~~~~Gi~~  257 (494)
T PRK05257        188 QLVGYL-QKQGNFELQLGHEVRDIKRNDDGSW-TVTVKDLKTGEKRTVRAK-FVFIGAGG-GALPLLQKSGIPE  257 (494)
T ss_pred             HHHHHH-HhCCCeEEEeCCEEEEEEECCCCCE-EEEEEEcCCCceEEEEcC-EEEECCCc-chHHHHHHcCCCc
Confidence            344444 3555 89999999999998524433 3444322 3433468997 59999997 7888999998873

>TIGR01812 sdhA_frdA_Gneg succinate dehydrogenase or fumarate reductase, flavoprotein subunitGram-negative/mitochondrial subgroup

Probab=99.35  E-value=1.2e-11  Score=142.36  Aligned_cols=57  Identities=19%  Similarity=0.217  Sum_probs=45.6

Q ss_pred             HHHHHHhcCCCeEEEcCeEEEEEEEccCCcEEEEEEEec-CCcEEEEEcCcEEEEccCCcc
Q psy14408        639 YLTPIAGKRTNLYVLKRSKVTKVIINDQNVATGVEYVNS-KGETVRVTANKEVILTAGAIA  698 (720)
Q Consensus       639 ~L~~Aa~e~aGVkIi~gt~VtkIl~e~gGrAtGV~v~dt-~G~e~tIkAkK~VVVAAGa~~  698 (720)
                      .|.+.+ ++.|++|++++.|++|+.+ +|+|.||.+.+. +|+...|+|+ .||+|+|++.
T Consensus       134 ~L~~~~-~~~gv~i~~~~~v~~L~~~-~g~v~Gv~~~~~~~g~~~~i~Ak-~VVlAtGG~~  191 (566)
T TIGR01812       134 TLYEQC-LKLGVSFFNEYFALDLIHD-DGRVRGVVAYDLKTGEIVFFRAK-AVVLATGGYG  191 (566)
T ss_pred             HHHHHH-HHcCCEEEeccEEEEEEEe-CCEEEEEEEEECCCCcEEEEECC-eEEECCCccc
Confidence            344433 3669999999999999998 899999988754 5655689996 6999999975

This model represents the succinate dehydrogenase flavoprotein subunit as found in Gram-negative bacteria, mitochondria, and some Archaea. Mitochondrial forms interact with ubiquinone and are designated EC 1.3.5.1, but can be degraded to 1.3.99.1. Some isozymes in E. coli and other species run primarily in the opposite direction and are designated fumarate reductase.

>PRK06263 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed

Probab=99.35  E-value=1.5e-11  Score=141.28  Aligned_cols=58  Identities=19%  Similarity=0.362  Sum_probs=45.8

Q ss_pred             HHHHHHhcCCCeEEEcCeEEEEEEEccCCcEEEEEEEe-cCCcEEEEEcCcEEEEccCCcc
Q psy14408        639 YLTPIAGKRTNLYVLKRSKVTKVIINDQNVATGVEYVN-SKGETVRVTANKEVILTAGAIA  698 (720)
Q Consensus       639 ~L~~Aa~e~aGVkIi~gt~VtkIl~e~gGrAtGV~v~d-t~G~e~tIkAkK~VVVAAGa~~  698 (720)
                      .|.+.+ ++.|++|++++.|++|+.+++++|+||.+.+ .+|+...|+|+ .||+|+|++.
T Consensus       139 ~L~~~~-~~~gv~i~~~t~v~~Li~~~~~~v~Gv~~~~~~~g~~~~i~Ak-aVIlATGG~~  197 (543)
T PRK06263        139 GLMEYL-IKERIKILEEVMAIKLIVDENREVIGAIFLDLRNGEIFPIYAK-ATILATGGAG  197 (543)
T ss_pred             HHHHHH-hcCCCEEEeCeEeeeeEEeCCcEEEEEEEEECCCCcEEEEEcC-cEEECCCCCC
Confidence            344444 3689999999999999987334599998876 46766789996 6999999975

>PLN02815 L-aspartate oxidase

Probab=99.34  E-value=1.5e-11  Score=142.77  Aligned_cols=59  Identities=17%  Similarity=0.394  Sum_probs=44.4

Q ss_pred             HHHHHHhcCCCeEEEcCeEEEEEEEcc-CC--cEEEEEEEec-CCcEEEEEcCcEEEEccCCcch
Q psy14408        639 YLTPIAGKRTNLYVLKRSKVTKVIIND-QN--VATGVEYVNS-KGETVRVTANKEVILTAGAIAN  699 (720)
Q Consensus       639 ~L~~Aa~e~aGVkIi~gt~VtkIl~e~-gG--rAtGV~v~dt-~G~e~tIkAkK~VVVAAGa~~S  699 (720)
                      ++..+. ++.|++|++++.|++|+.++ ++  +|.||.+.+. +|....|+|+ .||||||++..
T Consensus       161 L~~~~~-~~~~i~i~~~~~~~~Li~~~~g~~~~v~Gv~~~~~~~g~~~~i~Ak-aVILATGG~g~  223 (594)
T PLN02815        161 LLEAVK-NDPNITFFEHHFAIDLLTSQDGGSIVCHGADVLDTRTGEVVRFISK-VTLLASGGAGH  223 (594)
T ss_pred             HHHHHH-hcCCCEEEeceEhheeeeecCCCccEEEEEEEEEcCCCeEEEEEec-eEEEcCCccee
Confidence            333333 34599999999999999862 33  3899998754 5766788996 79999999863

>COG0665 DadA Glycine/D-amino acid oxidases (deaminating) [Amino acid transport and metabolism]

Probab=99.33  E-value=2.2e-11  Score=131.63  Aligned_cols=38  Identities=29%  Similarity=0.410  Sum_probs=34.4

Q ss_pred             CCcccEEEECCcHHHHHHHHHHHhcCCCcEEEEccCCCC
Q psy14408        431 GDCFDIIIVGASAAGCVLANRLSEVSSLKVLLIEAGGDT  469 (720)
Q Consensus       431 d~eyDVVIIGSGiAGLvAA~~LAea~G~KVLVLEKG~~~  469 (720)
                      +..+||||||||++|+++|++|+++ |.+|+|+|++...
T Consensus         2 ~~~~~vvVIGgGi~Gls~A~~La~~-G~~V~vie~~~~~   39 (387)
T COG0665           2 SMKMDVVIIGGGIVGLSAAYYLAER-GADVTVLEAGEAG   39 (387)
T ss_pred             CCcceEEEECCcHHHHHHHHHHHHc-CCEEEEEecCccC
Confidence            3567999999999999999999999 9999999998544

>PRK08275 putative oxidoreductase; Provisional

Probab=99.33  E-value=2.1e-11  Score=140.37  Aligned_cols=59  Identities=24%  Similarity=0.334  Sum_probs=46.3

Q ss_pred             HHHHHHHhcCCCeEEEcCeEEEEEEEccCCcEEEEEEEec-CCcEEEEEcCcEEEEccCCcc
Q psy14408        638 AYLTPIAGKRTNLYVLKRSKVTKVIINDQNVATGVEYVNS-KGETVRVTANKEVILTAGAIA  698 (720)
Q Consensus       638 a~L~~Aa~e~aGVkIi~gt~VtkIl~e~gGrAtGV~v~dt-~G~e~tIkAkK~VVVAAGa~~  698 (720)
                      ..|...+ ++.|++|++++.|++|+.+++|+|.||.+.+. +|....|+|+ .||+|+|++.
T Consensus       141 ~~L~~~~-~~~gv~i~~~~~v~~Li~~~~g~v~Gv~~~~~~~g~~~~i~Ak-~VIlATGG~~  200 (554)
T PRK08275        141 KVLYRQL-KRARVLITNRIMATRLLTDADGRVAGALGFDCRTGEFLVIRAK-AVILCCGAAG  200 (554)
T ss_pred             HHHHHHH-HHCCCEEEcceEEEEEEEcCCCeEEEEEEEecCCCcEEEEECC-EEEECCCCcc
Confidence            3455544 47899999999999999863578999987654 5665678996 6999999975

>PRK07803 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed

Probab=99.33  E-value=1.7e-11  Score=143.12  Aligned_cols=47  Identities=21%  Similarity=0.284  Sum_probs=40.4

Q ss_pred             eEEEcCeEEEEEEEccCCcEEEEEEEec-CCcEEEEEcCcEEEEccCCcc
Q psy14408        650 LYVLKRSKVTKVIINDQNVATGVEYVNS-KGETVRVTANKEVILTAGAIA  698 (720)
Q Consensus       650 VkIi~gt~VtkIl~e~gGrAtGV~v~dt-~G~e~tIkAkK~VVVAAGa~~  698 (720)
                      ++|+.++.|++|+.+ +|+|.||.+.+. +|+...|+|+ .||||+|++.
T Consensus       166 v~i~~~~~v~~L~~~-~g~v~Gv~~~~~~~g~~~~i~Ak-~VVlATGG~~  213 (626)
T PRK07803        166 IKVFAECTITELLKD-GGRIAGAFGYWRESGRFVLFEAP-AVVLATGGIG  213 (626)
T ss_pred             eEEEeCCEEEEEEEE-CCEEEEEEEEECCCCeEEEEEcC-eEEECCCccc
Confidence            999999999999988 889999987653 5666789997 6999999865

>KOG0260|consensus

Probab=99.32  E-value=2.5e-11  Score=142.98  Aligned_cols=22  Identities=50%  Similarity=0.896  Sum_probs=13.7

Q ss_pred             CCCCCCCCCCccccccCCCCCc
Q psy14408        224 NPESPLYSDSPYYYRNLPLYNP  245 (720)
Q Consensus       224 ~~~~~~~~~~~~~~~~~~~~~~  245 (720)
                      +||||-||-+|-|--.-|-|+|
T Consensus      1572 sptspsys~~~~ysp~sp~ysp 1593 (1605)
T KOG0260|consen 1572 SPTSPSYSTSPSYSPTSPSYSP 1593 (1605)
T ss_pred             CCCCCCccCCCCCCCCCCCCCC
Confidence            5667777776666555555544

>PRK08071 L-aspartate oxidase; Provisional

Probab=99.31  E-value=2.7e-11  Score=138.28  Aligned_cols=58  Identities=24%  Similarity=0.300  Sum_probs=46.8

Q ss_pred             HHHHHHHhcCCCeEEEcCeEEEEEEEccCCcEEEEEEEecCCcEEEEEcCcEEEEccCCcch
Q psy14408        638 AYLTPIAGKRTNLYVLKRSKVTKVIINDQNVATGVEYVNSKGETVRVTANKEVILTAGAIAN  699 (720)
Q Consensus       638 a~L~~Aa~e~aGVkIi~gt~VtkIl~e~gGrAtGV~v~dt~G~e~tIkAkK~VVVAAGa~~S  699 (720)
                      ..|.+++  +.|++|++++.|++|+.+ +++|.||.+.+.+|+...++|+ .||||+|++..
T Consensus       134 ~~L~~~~--~~gV~i~~~~~v~~Li~~-~g~v~Gv~~~~~~g~~~~i~Ak-~VVlATGG~~~  191 (510)
T PRK08071        134 EHLLQEL--VPHVTVVEQEMVIDLIIE-NGRCIGVLTKDSEGKLKRYYAD-YVVLASGGCGG  191 (510)
T ss_pred             HHHHHHH--hcCCEEEECeEhhheeec-CCEEEEEEEEECCCcEEEEEcC-eEEEecCCCcc
Confidence            3444445  369999999999999987 8899999987755666688997 69999999763

>PRK12839 hypothetical protein; Provisional

Probab=99.31  E-value=4.2e-11  Score=138.60  Aligned_cols=58  Identities=21%  Similarity=0.266  Sum_probs=45.3

Q ss_pred             cCCCeEEEcCeEEEEEEEccCCcEEEEEEEecCCcEEEEEcCcEEEEccCCcchHHHHH
Q psy14408        646 KRTNLYVLKRSKVTKVIINDQNVATGVEYVNSKGETVRVTANKEVILTAGAIANAQLLL  704 (720)
Q Consensus       646 e~aGVkIi~gt~VtkIl~e~gGrAtGV~v~dt~G~e~tIkAkK~VVVAAGa~~Sp~LLl  704 (720)
                      ++.|++|+.++.|++|+.+++|+|+||++.+.+|. .++.+.|.||||||++....-++
T Consensus       225 ~~~Gv~i~~~t~v~~Li~~~~g~V~GV~~~~~~g~-~~i~aak~VVLAtGGf~~n~~~~  282 (572)
T PRK12839        225 DDLGVDLRVSTSATSLTTDKNGRVTGVRVQGPDGA-VTVEATRGVVLATGGFPNDVDRR  282 (572)
T ss_pred             HHCCCEEEcCCEEEEEEECCCCcEEEEEEEeCCCc-EEEEeCCEEEEcCCCcccCHHHH
Confidence            37899999999999998864689999998764454 45666457999999988754433

>PRK06854 adenylylsulfate reductase subunit alpha; Validated

Probab=99.31  E-value=7.1e-11  Score=137.58  Aligned_cols=57  Identities=23%  Similarity=0.307  Sum_probs=43.9

Q ss_pred             HHHHHHhcCC-CeEEEcCeEEEEEEEccCCcEEEEEEEec-CCcEEEEEcCcEEEEccCCcc
Q psy14408        639 YLTPIAGKRT-NLYVLKRSKVTKVIINDQNVATGVEYVNS-KGETVRVTANKEVILTAGAIA  698 (720)
Q Consensus       639 ~L~~Aa~e~a-GVkIi~gt~VtkIl~e~gGrAtGV~v~dt-~G~e~tIkAkK~VVVAAGa~~  698 (720)
                      .|..++ ++. |++|++++.|++|+.+ +++|+||.+.+. +|+...++|+ .||+|+|++.
T Consensus       137 ~L~~~a-~~~ggV~i~~~~~v~~Li~~-~g~v~Gv~~~~~~~g~~~~i~Ak-aVILATGG~~  195 (608)
T PRK06854        137 IVAEAA-KKALGDNVLNRVFITDLLVD-DNRIAGAVGFSVRENKFYVFKAK-AVIVATGGAA  195 (608)
T ss_pred             HHHHHH-HhcCCCEEEeCCEEEEEEEe-CCEEEEEEEEEccCCcEEEEECC-EEEECCCchh
Confidence            343444 354 5999999999999987 789999987543 4655689997 6999999865

>PRK09231 fumarate reductase flavoprotein subunit; Validated

Probab=99.31  E-value=4.1e-11  Score=138.85  Aligned_cols=50  Identities=18%  Similarity=0.378  Sum_probs=42.4

Q ss_pred             CCCeEEEcCeEEEEEEEccCCcEEEEEEEec-CCcEEEEEcCcEEEEccCCcc
Q psy14408        647 RTNLYVLKRSKVTKVIINDQNVATGVEYVNS-KGETVRVTANKEVILTAGAIA  698 (720)
Q Consensus       647 ~aGVkIi~gt~VtkIl~e~gGrAtGV~v~dt-~G~e~tIkAkK~VVVAAGa~~  698 (720)
                      ..|+++++++.|++|+.+ +|+|.||...+. +|+...|+|+ .||+|+|++.
T Consensus       146 ~~~i~i~~~~~v~~Li~~-~g~v~Gv~~~~~~~g~~~~i~Ak-aVIlATGG~~  196 (582)
T PRK09231        146 YPQIQRFDEHFVLDILVD-DGHVRGLVAMNMMEGTLVQIRAN-AVVMATGGAG  196 (582)
T ss_pred             CCCcEEEeCeEEEEEEEe-CCEEEEEEEEEcCCCcEEEEECC-EEEECCCCCc
Confidence            358999999999999998 899999988653 5666789997 6999999865

>PRK06069 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed

Probab=99.31  E-value=3.7e-11  Score=138.96  Aligned_cols=57  Identities=21%  Similarity=0.299  Sum_probs=44.9

Q ss_pred             HHHHHHhcCCCeEEEcCeEEEEEEEccCCcEEEEEEEec-CCcEEEEEcCcEEEEccCCcc
Q psy14408        639 YLTPIAGKRTNLYVLKRSKVTKVIINDQNVATGVEYVNS-KGETVRVTANKEVILTAGAIA  698 (720)
Q Consensus       639 ~L~~Aa~e~aGVkIi~gt~VtkIl~e~gGrAtGV~v~dt-~G~e~tIkAkK~VVVAAGa~~  698 (720)
                      ++..+. +..|++|++++.|++|+.+ +++|.||.+.+. +|+...|+|+ .||+|+|++.
T Consensus       143 L~~~~~-~~~gv~i~~~~~v~~Li~~-~g~v~Gv~~~~~~~g~~~~i~Ak-~VIlATGG~~  200 (577)
T PRK06069        143 LYSRAL-RFDNIHFYDEHFVTSLIVE-NGVFKGVTAIDLKRGEFKVFQAK-AGIIATGGAG  200 (577)
T ss_pred             HHHHHH-hcCCCEEEECCEEEEEEEE-CCEEEEEEEEEcCCCeEEEEECC-cEEEcCchhc
Confidence            333344 3469999999999999988 789999988664 5655678997 5999999974

>PRK13369 glycerol-3-phosphate dehydrogenase; Provisional

Probab=99.31  E-value=8.2e-11  Score=133.87  Aligned_cols=65  Identities=20%  Similarity=0.198  Sum_probs=48.0

Q ss_pred             HHHHHHhcCCCeEEEcCeEEEEEEEccCCcEEEEEEEecCCcEEEEEcCcEEEEccCCcchHHHHHH-cCCC
Q psy14408        639 YLTPIAGKRTNLYVLKRSKVTKVIINDQNVATGVEYVNSKGETVRVTANKEVILTAGAIANAQLLLL-SGIG  709 (720)
Q Consensus       639 ~L~~Aa~e~aGVkIi~gt~VtkIl~e~gGrAtGV~v~dt~G~e~tIkAkK~VVVAAGa~~Sp~LLl~-SGIg  709 (720)
                      ++..+.  +.|++|+.+++|++|..+ ++ ..+|.+.+..|++.+|+|+ .||+|+|+ |+..++.+ .|+.
T Consensus       161 l~~~a~--~~Ga~i~~~~~V~~i~~~-~~-~~~v~~~~~~g~~~~i~a~-~VVnAaG~-wa~~l~~~~~g~~  226 (502)
T PRK13369        161 NALDAA--ERGATILTRTRCVSARRE-GG-LWRVETRDADGETRTVRAR-ALVNAAGP-WVTDVIHRVAGSN  226 (502)
T ss_pred             HHHHHH--HCCCEEecCcEEEEEEEc-CC-EEEEEEEeCCCCEEEEEec-EEEECCCc-cHHHHHhhccCCC
Confidence            344444  889999999999999886 44 4567776644666789997 59999996 67777663 3543

>KOG2820|consensus

Probab=99.31  E-value=1.3e-11  Score=131.77  Aligned_cols=65  Identities=25%  Similarity=0.263  Sum_probs=47.3

Q ss_pred             HHHHHHHhcCCCeEEEcCeEEEEEEEc-cCCcEEEEEEEecCCcEEEEEcCcEEEEccCCcchHHHHHH-cCCC
Q psy14408        638 AYLTPIAGKRTNLYVLKRSKVTKVIIN-DQNVATGVEYVNSKGETVRVTANKEVILTAGAIANAQLLLL-SGIG  709 (720)
Q Consensus       638 a~L~~Aa~e~aGVkIi~gt~VtkIl~e-~gGrAtGV~v~dt~G~e~tIkAkK~VVVAAGa~~Sp~LLl~-SGIg  709 (720)
                      ..|+.++ ++.|+.|+.+..|+.+.+. +.+..++|++.+  |.  ++.|+| +|+++|+ |+..||.. .|++
T Consensus       157 k~~~~~~-~~~G~i~~dg~~v~~~~~~~e~~~~v~V~Tt~--gs--~Y~akk-iI~t~Ga-Wi~klL~~~~~~~  223 (399)
T KOG2820|consen  157 KALQDKA-RELGVIFRDGEKVKFIKFVDEEGNHVSVQTTD--GS--IYHAKK-IIFTVGA-WINKLLPTSLAIG  223 (399)
T ss_pred             HHHHHHH-HHcCeEEecCcceeeEeeccCCCceeEEEecc--CC--eeecce-EEEEecH-HHHhhcCcccccC
Confidence            4456665 5899999999999999876 235555555544  63  588975 9999998 67788776 3444

>PRK13339 malate:quinone oxidoreductase; Reviewed

Probab=99.31  E-value=9.4e-11  Score=133.49  Aligned_cols=69  Identities=22%  Similarity=0.177  Sum_probs=48.0

Q ss_pred             HHHHHHHhcCCCeEEEcCeEEEEEEEccCCcEEEEEEEec-CCcEEEEEcCcEEEEccCCcchHHHHHHcCCCC
Q psy14408        638 AYLTPIAGKRTNLYVLKRSKVTKVIINDQNVATGVEYVNS-KGETVRVTANKEVILTAGAIANAQLLLLSGIGP  710 (720)
Q Consensus       638 a~L~~Aa~e~aGVkIi~gt~VtkIl~e~gGrAtGV~v~dt-~G~e~tIkAkK~VVVAAGa~~Sp~LLl~SGIgp  710 (720)
                      +++..+. ++.|++|+++++|++|..++++.++ |++.++ .|++.+++|+ .||+|||+ |+..|+.++|+..
T Consensus       189 aL~~~l~-~~~Gv~i~~~~~V~~I~~~~d~~w~-v~v~~t~~g~~~~i~Ad-~VV~AAGa-wS~~La~~~Gi~~  258 (497)
T PRK13339        189 KLAKHLE-SHPNAQVKYNHEVVDLERLSDGGWE-VTVKDRNTGEKREQVAD-YVFIGAGG-GAIPLLQKSGIPE  258 (497)
T ss_pred             HHHHHHH-hCCCcEEEeCCEEEEEEECCCCCEE-EEEEecCCCceEEEEcC-EEEECCCc-chHHHHHHcCCCc
Confidence            4455554 3569999999999999875233332 333322 3433468998 59999997 7889999999875

>PRK12834 putative FAD-binding dehydrogenase; Reviewed

Probab=99.31  E-value=4.9e-11  Score=137.13  Aligned_cols=56  Identities=23%  Similarity=0.303  Sum_probs=43.4

Q ss_pred             CCCeEEEcCeEEEEEEEccCCcEEEEEEEec-C-------------CcEEEEEcCcEEEEccCCcchHHHHH
Q psy14408        647 RTNLYVLKRSKVTKVIINDQNVATGVEYVNS-K-------------GETVRVTANKEVILTAGAIANAQLLL  704 (720)
Q Consensus       647 ~aGVkIi~gt~VtkIl~e~gGrAtGV~v~dt-~-------------G~e~tIkAkK~VVVAAGa~~Sp~LLl  704 (720)
                      +.|++|+++++|++|+.+ +|+|+||++.+. +             ++.++|+|+ .||||||++....-|+
T Consensus       164 ~~gv~i~~~t~~~~Li~~-~g~V~Gv~~~~~~~~~~~~~~~~~~~~~~~~~i~Ak-aVILATGGf~~n~em~  233 (549)
T PRK12834        164 RGLVRFRFRHRVDELVVT-DGAVTGVRGTVLEPSDAERGEASSREVVGEFELRAQ-AVIVTSGGIGGNHELV  233 (549)
T ss_pred             hCCceEEecCEeeEEEEe-CCEEEEEEEEecccccccccccccccccceEEEecC-EEEEeCCCcccCHHHH
Confidence            346999999999999998 899999987421 1             234688996 6999999998655333

>PRK12266 glpD glycerol-3-phosphate dehydrogenase; Reviewed

Probab=99.31  E-value=8.2e-11  Score=134.22  Aligned_cols=66  Identities=20%  Similarity=0.188  Sum_probs=48.0

Q ss_pred             HHHHHHHhcCCCeEEEcCeEEEEEEEccCCcEEEEEEEec-CCcEEEEEcCcEEEEccCCcchHHHHHH-cCCC
Q psy14408        638 AYLTPIAGKRTNLYVLKRSKVTKVIINDQNVATGVEYVNS-KGETVRVTANKEVILTAGAIANAQLLLL-SGIG  709 (720)
Q Consensus       638 a~L~~Aa~e~aGVkIi~gt~VtkIl~e~gGrAtGV~v~dt-~G~e~tIkAkK~VVVAAGa~~Sp~LLl~-SGIg  709 (720)
                      .++..+.  +.|++|+.+++|++|..+ ++. .+|++.+. +|++.+|+|+ .||+|+|+ |+..++.. .|+.
T Consensus       160 ~l~~~A~--~~Ga~i~~~~~V~~i~~~-~~~-~~v~~~~~~~g~~~~i~a~-~VVnAaG~-wa~~l~~~~~g~~  227 (508)
T PRK12266        160 LNARDAA--ERGAEILTRTRVVSARRE-NGL-WHVTLEDTATGKRYTVRAR-ALVNAAGP-WVKQFLDDGLGLP  227 (508)
T ss_pred             HHHHHHH--HcCCEEEcCcEEEEEEEe-CCE-EEEEEEEcCCCCEEEEEcC-EEEECCCc-cHHHHHhhccCCC
Confidence            3444454  789999999999999876 544 56777653 4656789997 59999997 67777654 3553

>PRK07395 L-aspartate oxidase; Provisional

Probab=99.31  E-value=4.7e-11  Score=137.64  Aligned_cols=50  Identities=18%  Similarity=0.361  Sum_probs=41.4

Q ss_pred             CCCeEEEcCeEEEEEEEcc-CCcEEEEEEEecCCcEEEEEcCcEEEEccCCcc
Q psy14408        647 RTNLYVLKRSKVTKVIIND-QNVATGVEYVNSKGETVRVTANKEVILTAGAIA  698 (720)
Q Consensus       647 ~aGVkIi~gt~VtkIl~e~-gGrAtGV~v~dt~G~e~tIkAkK~VVVAAGa~~  698 (720)
                      +.|++|++++.|++|+.++ +|+|.||.+.+ +|+...|+|+ .||||||++.
T Consensus       147 ~~gi~i~~~~~v~~Li~~~~~g~v~Gv~~~~-~g~~~~i~Ak-aVILATGG~~  197 (553)
T PRK07395        147 RPNIEIISQALALSLWLEPETGRCQGISLLY-QGQITWLRAG-AVILATGGGG  197 (553)
T ss_pred             cCCcEEEECcChhhheecCCCCEEEEEEEEE-CCeEEEEEcC-EEEEcCCCCc
Confidence            4599999999999999872 38999998875 5666678996 6999999963

>COG1233 Phytoene dehydrogenase and related proteins [Secondary metabolites biosynthesis, transport, and catabolism]

Probab=99.30  E-value=1.3e-11  Score=140.11  Aligned_cols=40  Identities=25%  Similarity=0.419  Sum_probs=37.0

Q ss_pred             CcccEEEECCcHHHHHHHHHHHhcCCCcEEEEccCCCCCCC
Q psy14408        432 DCFDIIIVGASAAGCVLANRLSEVSSLKVLLIEAGGDTPIH  472 (720)
Q Consensus       432 ~eyDVVIIGSGiAGLvAA~~LAea~G~KVLVLEKG~~~~~s  472 (720)
                      ..+||||||||++||+||.+||++ |++|+||||....++.
T Consensus         2 ~~~dvvVIGaG~~GL~aAa~LA~~-G~~V~VlE~~~~~GG~   41 (487)
T COG1233           2 PMYDVVVIGAGLNGLAAAALLARA-GLKVTVLEKNDRVGGR   41 (487)
T ss_pred             CCccEEEECCChhHHHHHHHHHhC-CCEEEEEEecCCCCcc
Confidence            468999999999999999999999 9999999999888664

>PRK12843 putative FAD-binding dehydrogenase; Reviewed

Probab=99.30  E-value=7.3e-11  Score=136.64  Aligned_cols=63  Identities=19%  Similarity=0.261  Sum_probs=50.2

Q ss_pred             HHHHHhcCCCeEEEcCeEEEEEEEccCCcEEEEEEEecCCcEEEEEcCcEEEEccCCcchHHHHHH
Q psy14408        640 LTPIAGKRTNLYVLKRSKVTKVIINDQNVATGVEYVNSKGETVRVTANKEVILTAGAIANAQLLLL  705 (720)
Q Consensus       640 L~~Aa~e~aGVkIi~gt~VtkIl~e~gGrAtGV~v~dt~G~e~tIkAkK~VVVAAGa~~Sp~LLl~  705 (720)
                      |.+.+ ++.|++|++++.|++|+.+ +++|+||++.+ +|+.+.|+|++.||||+|++....-|++
T Consensus       227 L~~~~-~~~Gv~i~~~t~v~~Li~~-~g~V~GV~~~~-~g~~~~i~A~~~VVlAtGg~~~n~em~~  289 (578)
T PRK12843        227 LLYSL-RARGVRILTQTDVESLETD-HGRVIGATVVQ-GGVRRRIRARGGVVLATGGFNRHPQLRR  289 (578)
T ss_pred             HHHHH-HhCCCEEEeCCEEEEEEee-CCEEEEEEEec-CCeEEEEEccceEEECCCCcccCHHHHH
Confidence            44444 4789999999999999987 89999998875 5666788876579999999988654443

>TIGR01811 sdhA_Bsu succinate dehydrogenase or fumarate reductase, flavoprotein subunit, Bacillus subtilis subgroup

Probab=99.30  E-value=3.3e-11  Score=140.22  Aligned_cols=51  Identities=25%  Similarity=0.283  Sum_probs=42.6

Q ss_pred             CCCeEEEcCeEEEEEEEccCCcEEEEEEEec-CCcEEEEEcCcEEEEccCCcc
Q psy14408        647 RTNLYVLKRSKVTKVIINDQNVATGVEYVNS-KGETVRVTANKEVILTAGAIA  698 (720)
Q Consensus       647 ~aGVkIi~gt~VtkIl~e~gGrAtGV~v~dt-~G~e~tIkAkK~VVVAAGa~~  698 (720)
                      +.|++|++++.|++|+.+++|+|+||.+.+. +|+...|+|+ .||||||++.
T Consensus       145 ~~gV~i~~~t~v~~Li~dd~grV~GV~~~~~~~g~~~~i~Ak-aVVLATGG~g  196 (603)
T TIGR01811       145 AGLVEKYEGWEMLDIIVVDGNRARGIIARNLVTGEIETHSAD-AVILATGGYG  196 (603)
T ss_pred             cCCcEEEeCcEEEEEEEcCCCEEEEEEEEECCCCcEEEEEcC-EEEECCCCCc
Confidence            3589999999999999863579999998864 5666788997 6999999974

This model represents the succinate dehydrogenase flavoprotein subunit as found in the low-GC Gram-positive bacteria and a few other lineages. This enzyme may act in a complete or partial TCA cycle, or act in the opposite direction as fumarate reductase. In some but not all species, succinate dehydrogenase and fumarate reductase may be encoded as separate isozymes.

>TIGR01176 fum_red_Fp fumarate reductase, flavoprotein subunit

Probab=99.29  E-value=5.6e-11  Score=137.77  Aligned_cols=51  Identities=18%  Similarity=0.337  Sum_probs=43.3

Q ss_pred             CCCeEEEcCeEEEEEEEccCCcEEEEEEEec-CCcEEEEEcCcEEEEccCCcch
Q psy14408        647 RTNLYVLKRSKVTKVIINDQNVATGVEYVNS-KGETVRVTANKEVILTAGAIAN  699 (720)
Q Consensus       647 ~aGVkIi~gt~VtkIl~e~gGrAtGV~v~dt-~G~e~tIkAkK~VVVAAGa~~S  699 (720)
                      ..|+++++++.|++|+.+ +|+|.||...+. +|+...|+|+ .||+|+|++..
T Consensus       145 ~~~i~i~~~~~v~~Li~~-~g~v~Gv~~~~~~~g~~~~i~Ak-aVILATGG~~~  196 (580)
T TIGR01176       145 YPQIMRYDEWFVTDLLVD-DGRVCGLVAIEMAEGRLVTILAD-AVVLATGGAGR  196 (580)
T ss_pred             cCCCEEEeCeEEEEEEee-CCEEEEEEEEEcCCCcEEEEecC-EEEEcCCCCcc
Confidence            458999999999999998 889999988654 5666789996 79999999763

The terms succinate dehydrogenase and fumarate reductase may be used interchangeably in certain systems. However, a number of species have distinct complexes, with the fumarate reductase active under anaerobic conditions. This model represents the fumarate reductase flavoprotein subunit from several such species in which a distinct succinate dehydrogenase is also found. Not all bona fide fumarate reductases will be found by this model.

>COG2081 Predicted flavoproteins [General function prediction only]

Probab=99.29  E-value=1.6e-11  Score=134.08  Aligned_cols=89  Identities=24%  Similarity=0.285  Sum_probs=56.4

Q ss_pred             HHHHHHHHHHcCCCCCCCCCCccccccccccCCccccCcchhHHHHHHHHHHhcCCCeEEEcCeEEEEEEEccCCcEEEE
Q psy14408        593 REIFETSAQELGYPCPKDMNDRYVDVGFAELPGMTRYGLRFSAADAYLTPIAGKRTNLYVLKRSKVTKVIINDQNVATGV  672 (720)
Q Consensus       593 ~q~llea~rklG~~~~~d~ng~~~~~G~~~~~~g~~~G~k~~aa~a~L~~Aa~e~aGVkIi~gt~VtkIl~e~gGrAtGV  672 (720)
                      .+.+++.++++|+...+.      ..|.+++    ...........|+.++.  +.||+|+++++|.+|..+ +   .+.
T Consensus        81 ~~d~i~~~e~~Gi~~~e~------~~Gr~Fp----~sdkA~~Iv~~ll~~~~--~~gV~i~~~~~v~~v~~~-~---~~f  144 (408)
T COG2081          81 PEDFIDWVEGLGIALKEE------DLGRMFP----DSDKASPIVDALLKELE--ALGVTIRTRSRVSSVEKD-D---SGF  144 (408)
T ss_pred             HHHHHHHHHhcCCeeEEc------cCceecC----CccchHHHHHHHHHHHH--HcCcEEEecceEEeEEec-C---ceE
Confidence            345666677777765421      2333332    11122233445666655  899999999999999987 3   344


Q ss_pred             EEEecCCcEEEEEcCcEEEEccCCcchH
Q psy14408        673 EYVNSKGETVRVTANKEVILTAGAIANA  700 (720)
Q Consensus       673 ~v~dt~G~e~tIkAkK~VVVAAGa~~Sp  700 (720)
                      .+...+|.  +|+|++ +|||+|+...|
T Consensus       145 ~l~t~~g~--~i~~d~-lilAtGG~S~P  169 (408)
T COG2081         145 RLDTSSGE--TVKCDS-LILATGGKSWP  169 (408)
T ss_pred             EEEcCCCC--EEEccE-EEEecCCcCCC
Confidence            44443454  799984 99999976665

>PRK13800 putative oxidoreductase/HEAT repeat-containing protein; Provisional

Probab=99.29  E-value=5.6e-11  Score=144.04  Aligned_cols=49  Identities=29%  Similarity=0.396  Sum_probs=42.1

Q ss_pred             CCeEEEcCeEEEEEEEccCCcEEEEEEEec-CCcEEEEEcCcEEEEccCCcc
Q psy14408        648 TNLYVLKRSKVTKVIINDQNVATGVEYVNS-KGETVRVTANKEVILTAGAIA  698 (720)
Q Consensus       648 aGVkIi~gt~VtkIl~e~gGrAtGV~v~dt-~G~e~tIkAkK~VVVAAGa~~  698 (720)
                      .++++.+++.+++|+.+ +|+|.||.+.+. +|+...|+|+ .||||||+++
T Consensus       156 ~~i~~~~~~~~~~Li~~-~g~v~Gv~~~~~~~g~~~~i~Ak-aVILATGG~g  205 (897)
T PRK13800        156 ERIRIENRLMPVRVLTE-GGRAVGAAALNTRTGEFVTVGAK-AVILATGPCG  205 (897)
T ss_pred             CCcEEEeceeeEEEEee-CCEEEEEEEEecCCCcEEEEECC-EEEECCCccc
Confidence            47999999999999987 889999998764 5777789996 6999999975

>PF03486 HI0933_like: HI0933-like protein; InterPro: IPR004792 This is a family of conserved hypothetical proteins that may include proteins with a dinucleotide-binding motif (Rossman fold), including oxidoreductases and dehydrogenases

Probab=99.29  E-value=1.1e-11  Score=138.10  Aligned_cols=59  Identities=20%  Similarity=0.210  Sum_probs=36.3

Q ss_pred             HHHHHHHHHHhcCCCeEEEcCeEEEEEEEccCCcEEEEEEEecCCcEEEEEcCcEEEEccCCcchH
Q psy14408        635 AADAYLTPIAGKRTNLYVLKRSKVTKVIINDQNVATGVEYVNSKGETVRVTANKEVILTAGAIANA  700 (720)
Q Consensus       635 aa~a~L~~Aa~e~aGVkIi~gt~VtkIl~e~gGrAtGV~v~dt~G~e~tIkAkK~VVVAAGa~~Sp  700 (720)
                      .....|...+ ++.||+|+.+++|++|+.+ ++++.+|++.  ++  .++.|+ +||||+|+...|
T Consensus       110 ~Vv~~L~~~l-~~~gv~i~~~~~V~~i~~~-~~~~f~v~~~--~~--~~~~a~-~vILAtGG~S~p  168 (409)
T PF03486_consen  110 SVVDALLEEL-KRLGVEIHFNTRVKSIEKK-EDGVFGVKTK--NG--GEYEAD-AVILATGGKSYP  168 (409)
T ss_dssp             HHHHHHHHHH-HHHT-EEE-S--EEEEEEE-TTEEEEEEET--TT--EEEEES-EEEE----SSSG
T ss_pred             HHHHHHHHHH-HHcCCEEEeCCEeeeeeec-CCceeEeecc--Cc--ccccCC-EEEEecCCCCcc
Confidence            3334455544 4789999999999999998 7777778772  23  389998 599999986543

; PDB: 2I0Z_A 3V76_A 2GQF_A.

>TIGR00551 nadB L-aspartate oxidase

Probab=99.28  E-value=5.9e-11  Score=134.55  Aligned_cols=59  Identities=19%  Similarity=0.255  Sum_probs=45.3

Q ss_pred             HHHHHHHhcCCCeEEEcCeEEEEEEEccCCcEEEEEEEecCCcEEEEEcCcEEEEccCCcch
Q psy14408        638 AYLTPIAGKRTNLYVLKRSKVTKVIINDQNVATGVEYVNSKGETVRVTANKEVILTAGAIAN  699 (720)
Q Consensus       638 a~L~~Aa~e~aGVkIi~gt~VtkIl~e~gGrAtGV~v~dt~G~e~tIkAkK~VVVAAGa~~S  699 (720)
                      ..|.+.+++..|++|++++.|++|+.+ +++|.||.+.+. ++...++|+ .||+|+|++..
T Consensus       132 ~~L~~~~~~~~gi~i~~~~~v~~l~~~-~g~v~Gv~~~~~-~~~~~i~A~-~VVlAtGG~~~  190 (488)
T TIGR00551       132 TTLVKKALNHPNIRIIEGENALDLLIE-TGRVVGVWVWNR-ETVETCHAD-AVVLATGGAGK  190 (488)
T ss_pred             HHHHHHHHhcCCcEEEECeEeeeeecc-CCEEEEEEEEEC-CcEEEEEcC-EEEECCCcccC
Confidence            334444412369999999999999987 788999988763 445678997 69999999753

L-aspartate oxidase is the B protein, NadB, of the quinolinate synthetase complex. Quinolinate synthetase makes a precursor of the pyridine nucleotide portion of NAD. This model identifies proteins that cluster as L-aspartate oxidase (a flavoprotein difficult to separate from the set of closely related flavoprotein subunits of succinate dehydrogenase and fumarate reductase) by both UPGMA and neighbor-joining trees. The most distant protein accepted as an L-aspartate oxidase (NadB), that from Pyrococcus horikoshii, not only clusters with other NadB but is just one gene away from NadA.

>PRK06134 putative FAD-binding dehydrogenase; Reviewed

Probab=99.27  E-value=2.3e-10  Score=132.60  Aligned_cols=61  Identities=16%  Similarity=0.237  Sum_probs=48.0

Q ss_pred             HHHHHhcCCCeEEEcCeEEEEEEEccCCcEEEEEEEecCCcEEEEEcCcEEEEccCCcchHHHH
Q psy14408        640 LTPIAGKRTNLYVLKRSKVTKVIINDQNVATGVEYVNSKGETVRVTANKEVILTAGAIANAQLL  703 (720)
Q Consensus       640 L~~Aa~e~aGVkIi~gt~VtkIl~e~gGrAtGV~v~dt~G~e~tIkAkK~VVVAAGa~~Sp~LL  703 (720)
                      |.+.+ ++.|++|+.+++|++|+.+ +++|+||++.+ +++..+|+|+|.||||+|++.....+
T Consensus       223 L~~~a-~~~Gv~i~~~t~v~~l~~~-~g~v~GV~~~~-~~~~~~i~a~k~VVlAtGg~~~n~~~  283 (581)
T PRK06134        223 LLKSA-EDLGVRIWESAPARELLRE-DGRVAGAVVET-PGGLQEIRARKGVVLAAGGFPHDPAR  283 (581)
T ss_pred             HHHHH-HhCCCEEEcCCEEEEEEEe-CCEEEEEEEEE-CCcEEEEEeCCEEEEcCCCcccCHHH
Confidence            33444 4789999999999999988 88999999876 34556789944799999998765444

>KOG0260|consensus

Probab=99.27  E-value=7.1e-11  Score=139.28  Aligned_cols=17  Identities=47%  Similarity=0.837  Sum_probs=8.9

Q ss_pred             ecCCCCCCCCCCCCCCCCCC
Q psy14408         61 IPYSNTDDIYNPFSPINQYS   80 (720)
Q Consensus        61 ~~~~~~~~~~~~~~~~~~~~   80 (720)
                      .||+|..   .|+||...|+
T Consensus      1431 ~p~~~~~---~~~sp~~s~~ 1447 (1605)
T KOG0260|consen 1431 MPWSNMS---SPASPGSSYS 1447 (1605)
T ss_pred             CcccccC---CCCCCCCCCC
Confidence            3887743   4455444443

>PRK08205 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed

Probab=99.27  E-value=9.4e-11  Score=135.89  Aligned_cols=59  Identities=19%  Similarity=0.242  Sum_probs=46.3

Q ss_pred             HHHHHHHhcCCCeEEEcCeEEEEEEEccC---CcEEEEEEEec-CCcEEEEEcCcEEEEccCCcc
Q psy14408        638 AYLTPIAGKRTNLYVLKRSKVTKVIINDQ---NVATGVEYVNS-KGETVRVTANKEVILTAGAIA  698 (720)
Q Consensus       638 a~L~~Aa~e~aGVkIi~gt~VtkIl~e~g---GrAtGV~v~dt-~G~e~tIkAkK~VVVAAGa~~  698 (720)
                      ..|.+.+ ++.|++|++++.|++|+.+++   |+|.||...+. +|+...|+|+ .||||+|++.
T Consensus       144 ~~L~~~~-~~~gv~i~~~~~v~~Li~~~~~~~g~v~Gv~~~~~~~g~~~~i~Ak-aVVLATGG~~  206 (583)
T PRK08205        144 QTLYQNC-VKHGVEFFNEFYVLDLLLTETPSGPVAAGVVAYELATGEIHVFHAK-AVVFATGGSG  206 (583)
T ss_pred             HHHHHHH-HhcCCEEEeCCEEEEEEecCCccCCcEEEEEEEEcCCCeEEEEEeC-eEEECCCCCc
Confidence            4455544 478999999999999998722   89999988653 4655678996 6999999976

>PRK09077 L-aspartate oxidase; Provisional

Probab=99.27  E-value=8.9e-11  Score=134.78  Aligned_cols=52  Identities=25%  Similarity=0.377  Sum_probs=42.8

Q ss_pred             cCCCeEEEcCeEEEEEEEcc-----CCcEEEEEEEec-CCcEEEEEcCcEEEEccCCcc
Q psy14408        646 KRTNLYVLKRSKVTKVIIND-----QNVATGVEYVNS-KGETVRVTANKEVILTAGAIA  698 (720)
Q Consensus       646 e~aGVkIi~gt~VtkIl~e~-----gGrAtGV~v~dt-~G~e~tIkAkK~VVVAAGa~~  698 (720)
                      ++.|++|++++.|++++.++     +++|.||.+.+. +|+...|+|+ .||+|+|++.
T Consensus       150 ~~~~I~v~~~~~v~~Li~~~~~~~~~g~v~Gv~~~~~~~g~~~~i~Ak-~VVlATGG~~  207 (536)
T PRK09077        150 NHPNITVLERHNAIDLITSDKLGLPGRRVVGAYVLNRNKERVETIRAK-FVVLATGGAS  207 (536)
T ss_pred             hCCCcEEEeeEEeeeeeecccccCCCCEEEEEEEEECCCCcEEEEecC-eEEECCCCCC
Confidence            34599999999999999762     289999998764 5666789996 6999999975

>TIGR02061 aprA adenosine phosphosulphate reductase, alpha subunit

Probab=99.26  E-value=1e-10  Score=136.32  Aligned_cols=51  Identities=22%  Similarity=0.266  Sum_probs=42.2

Q ss_pred             CCCeEEEcCeEEEEEEEccC--CcEEEEEEEec-CCcEEEEEcCcEEEEccCCcc
Q psy14408        647 RTNLYVLKRSKVTKVIINDQ--NVATGVEYVNS-KGETVRVTANKEVILTAGAIA  698 (720)
Q Consensus       647 ~aGVkIi~gt~VtkIl~e~g--GrAtGV~v~dt-~G~e~tIkAkK~VVVAAGa~~  698 (720)
                      +.+++|++++.|++|+.+++  |+|.||.+.+. +|+...|+|+ .||+|||++.
T Consensus       138 ~~~~~i~~~~~v~~Ll~d~~~~GrV~Gv~~~~~~~g~~~~i~Ak-aVVLATGG~~  191 (614)
T TIGR02061       138 NALGDIFERIFIVKLLLDKNTPNRIAGAVGFNVRANEVHVFKAK-TVIVAAGGAV  191 (614)
T ss_pred             hCCCeEEcccEEEEEEecCCCCCeEEEEEEEEeCCCcEEEEECC-EEEECCCccc
Confidence            56789999999999998722  79999988654 5666789997 6999999975

During dissimilatory sulfate reduction or sulfur oxidation, adenylylsulfate (APS) reductase catalyzes reversibly the two-electron reduction of APS to sulfite and AMP. Found in several bacterial lineages and in Archaeoglobales, APS reductase is a heterodimer composed of an alpha subunit containing a noncovalently bound FAD, and a beta subunit containing two [4Fe-4S] clusters. Described by this model is the alpha subunit of APS reductase, sharing common evolutionary origin with fumarate reductase/succinate dehydrogenase flavoproteins.

>PRK07512 L-aspartate oxidase; Provisional

Probab=99.25  E-value=6e-11  Score=135.51  Aligned_cols=49  Identities=22%  Similarity=0.454  Sum_probs=41.2

Q ss_pred             CCCeEEEcCeEEEEEEEccCCcEEEEEEEecCCcEEEEEcCcEEEEccCCcc
Q psy14408        647 RTNLYVLKRSKVTKVIINDQNVATGVEYVNSKGETVRVTANKEVILTAGAIA  698 (720)
Q Consensus       647 ~aGVkIi~gt~VtkIl~e~gGrAtGV~v~dt~G~e~tIkAkK~VVVAAGa~~  698 (720)
                      +.|++|++++.|++|+.+ +|+|+||.+.+ .++...++|+ .||||+|++.
T Consensus       149 ~~gV~i~~~~~v~~Li~~-~g~v~Gv~~~~-~~~~~~i~Ak-~VVLATGG~~  197 (513)
T PRK07512        149 TPSITVLEGAEARRLLVD-DGAVAGVLAAT-AGGPVVLPAR-AVVLATGGIG  197 (513)
T ss_pred             CCCCEEEECcChhheeec-CCEEEEEEEEe-CCeEEEEECC-EEEEcCCCCc
Confidence            359999999999999987 78999999876 3444578997 6999999975

>COG1635 THI4 Ribulose 1,5-bisphosphate synthetase, converts PRPP to RuBP, flavoprotein [Carbohydrate transport and metabolism]

Probab=99.24  E-value=7.6e-11  Score=120.08  Aligned_cols=56  Identities=16%  Similarity=0.233  Sum_probs=43.8

Q ss_pred             HHHHHHHhcCCCeEEEcCeEEEEEEEccCC-cEEEEEEEecC----C---cEEEEEcCcEEEEccCCc
Q psy14408        638 AYLTPIAGKRTNLYVLKRSKVTKVIINDQN-VATGVEYVNSK----G---ETVRVTANKEVILTAGAI  697 (720)
Q Consensus       638 a~L~~Aa~e~aGVkIi~gt~VtkIl~e~gG-rAtGV~v~dt~----G---~e~tIkAkK~VVVAAGa~  697 (720)
                      .++.+++  ++|++|+..+.|++|+++ ++ +|.||.+.++.    |   .-..|+|+ .||-|||.-
T Consensus       114 kl~~~a~--~aGaki~n~~~veDvi~r-~~~rVaGvVvNWt~V~~~~lhvDPl~i~a~-~VvDaTGHd  177 (262)
T COG1635         114 KLAARAL--DAGAKIFNGVSVEDVIVR-DDPRVAGVVVNWTPVQMAGLHVDPLTIRAK-AVVDATGHD  177 (262)
T ss_pred             HHHHHHH--hcCceeeecceEEEEEEe-cCCceEEEEEecchhhhcccccCcceeeEE-EEEeCCCCc
Confidence            4555666  889999999999999998 55 89999999861    2   22578996 688888863

>PLN02661 Putative thiazole synthesis

Probab=99.23  E-value=1.4e-10  Score=126.47  Aligned_cols=58  Identities=14%  Similarity=0.205  Sum_probs=44.2

Q ss_pred             HHHHHHHhcCCCeEEEcCeEEEEEEEccCCcEEEEEEEec----CC------cEEEEEcCcEEEEccCCcc
Q psy14408        638 AYLTPIAGKRTNLYVLKRSKVTKVIINDQNVATGVEYVNS----KG------ETVRVTANKEVILTAGAIA  698 (720)
Q Consensus       638 a~L~~Aa~e~aGVkIi~gt~VtkIl~e~gGrAtGV~v~dt----~G------~e~tIkAkK~VVVAAGa~~  698 (720)
                      .++..++ ++.|++|+.++.|++|+.+ +++|.||.+.+.    ++      +...|+|+ .||+|||+.+
T Consensus       177 tLi~ka~-~~~gVkI~~~t~V~DLI~~-~grVaGVVvnw~~v~~~~~~~s~~dp~~I~Ak-aVVlATGh~g  244 (357)
T PLN02661        177 TIMSKLL-ARPNVKLFNAVAAEDLIVK-GDRVGGVVTNWALVAQNHDTQSCMDPNVMEAK-VVVSSCGHDG  244 (357)
T ss_pred             HHHHHHH-hcCCCEEEeCeEeeeEEec-CCEEEEEEeecchhhhccCCCCccceeEEECC-EEEEcCCCCC
Confidence            3455555 5689999999999999998 899999987542    11      22478997 6999999654

>PRK01747 mnmC bifunctional tRNA (mnm(5)s(2)U34)-methyltransferase/FAD-dependent cmnm(5)s(2)U34 oxidoreductase; Reviewed

Probab=99.22  E-value=4.5e-11  Score=140.32  Aligned_cols=35  Identities=34%  Similarity=0.398  Sum_probs=32.6

Q ss_pred             cccEEEECCcHHHHHHHHHHHhcCCCcEEEEccCCC
Q psy14408        433 CFDIIIVGASAAGCVLANRLSEVSSLKVLLIEAGGD  468 (720)
Q Consensus       433 eyDVVIIGSGiAGLvAA~~LAea~G~KVLVLEKG~~  468 (720)
                      ++||||||||++|+++|++|+++ |++|+||||+..
T Consensus       260 ~~dVvIIGaGIaG~s~A~~La~~-G~~V~VlE~~~~  294 (662)
T PRK01747        260 ARDAAIIGGGIAGAALALALARR-GWQVTLYEADEA  294 (662)
T ss_pred             CCCEEEECccHHHHHHHHHHHHC-CCeEEEEecCCC
Confidence            47999999999999999999999 999999999843

>PF01946 Thi4: Thi4 family; PDB: 1RP0_A 3FPZ_B 3JSK_K

Probab=99.22  E-value=1.4e-10  Score=118.35  Aligned_cols=56  Identities=18%  Similarity=0.292  Sum_probs=41.6

Q ss_pred             HHHHHHHhcCCCeEEEcCeEEEEEEEccCCcEEEEEEEec----CC---cEEEEEcCcEEEEccCC
Q psy14408        638 AYLTPIAGKRTNLYVLKRSKVTKVIINDQNVATGVEYVNS----KG---ETVRVTANKEVILTAGA  696 (720)
Q Consensus       638 a~L~~Aa~e~aGVkIi~gt~VtkIl~e~gGrAtGV~v~dt----~G---~e~tIkAkK~VVVAAGa  696 (720)
                      .++..++  ++|++|+..+.|+++++++++|+.||.+.++    .|   .-..|+|+ .||=|||.
T Consensus       101 ~L~s~a~--~aGakifn~~~vEDvi~r~~~rV~GvViNWt~V~~~glHvDPl~i~ak-~ViDaTGH  163 (230)
T PF01946_consen  101 TLASKAI--DAGAKIFNLTSVEDVIVREDDRVAGVVINWTPVEMAGLHVDPLTIRAK-VVIDATGH  163 (230)
T ss_dssp             HHHHHHH--TTTEEEEETEEEEEEEEECSCEEEEEEEEEHHHHTT--T-B-EEEEES-EEEE---S
T ss_pred             HHHHHHh--cCCCEEEeeeeeeeeEEEcCCeEEEEEEEehHHhHhhcCCCcceEEEe-EEEeCCCC
Confidence            4566666  7999999999999999983389999999986    22   23689996 68888885

>TIGR02730 carot_isom carotene isomerase

Probab=99.21  E-value=6.5e-11  Score=134.04  Aligned_cols=60  Identities=25%  Similarity=0.336  Sum_probs=45.9

Q ss_pred             HHHHHHHhcCCCeEEEcCeEEEEEEEccCCcEEEEEEEecCCcEEEEEcCcEEEEccCCcchHHHHH
Q psy14408        638 AYLTPIAGKRTNLYVLKRSKVTKVIINDQNVATGVEYVNSKGETVRVTANKEVILTAGAIANAQLLL  704 (720)
Q Consensus       638 a~L~~Aa~e~aGVkIi~gt~VtkIl~e~gGrAtGV~v~dt~G~e~tIkAkK~VVVAAGa~~Sp~LLl  704 (720)
                      ..|.+.+ ++.|++|+++++|++|+.+ ++++.||++.+  |+  ++.|+ .||+|+|.+.+-..|+
T Consensus       233 ~~L~~~~-~~~G~~i~~~~~V~~I~~~-~~~~~gv~~~~--g~--~~~ad-~vV~a~~~~~~~~~Ll  292 (493)
T TIGR02730       233 ESLVKGL-EKHGGQIRYRARVTKIILE-NGKAVGVKLAD--GE--KIYAK-RIVSNATRWDTFGKLL  292 (493)
T ss_pred             HHHHHHH-HHCCCEEEeCCeeeEEEec-CCcEEEEEeCC--CC--EEEcC-EEEECCChHHHHHHhC
Confidence            3344555 4889999999999999998 78899998765  54  68897 5999999865554343

Members of this family, including sll0033 (crtH) of Synechocystis sp. PCC 6803, catalyze a cis-trans isomerization of carotenes to the all-trans lycopene, a reaction that can also occur non-enzymatically in light through photoisomerization.

>TIGR02734 crtI_fam phytoene desaturase

Probab=99.21  E-value=3.9e-11  Score=135.76  Aligned_cols=64  Identities=22%  Similarity=0.215  Sum_probs=47.0

Q ss_pred             HHHHHHHhcCCCeEEEcCeEEEEEEEccCCcEEEEEEEecCCcEEEEEcCcEEEEccCCcchHHHHHHcCC
Q psy14408        638 AYLTPIAGKRTNLYVLKRSKVTKVIINDQNVATGVEYVNSKGETVRVTANKEVILTAGAIANAQLLLLSGI  708 (720)
Q Consensus       638 a~L~~Aa~e~aGVkIi~gt~VtkIl~e~gGrAtGV~v~dt~G~e~tIkAkK~VVVAAGa~~Sp~LLl~SGI  708 (720)
                      ..|.+.+ ++.|++|+.+++|++|+.+ +++++||++.+  |+  ++.|+ .||+|++...+...|+...+
T Consensus       223 ~al~~~~-~~~G~~i~~~~~V~~i~~~-~~~~~~V~~~~--g~--~~~ad-~VI~a~~~~~~~~~l~~~~~  286 (502)
T TIGR02734       223 AAMAKLA-EDLGGELRLNAEVIRIETE-GGRATAVHLAD--GE--RLDAD-AVVSNADLHHTYRRLLPNHP  286 (502)
T ss_pred             HHHHHHH-HHCCCEEEECCeEEEEEee-CCEEEEEEECC--CC--EEECC-EEEECCcHHHHHHHhcCccc
Confidence            3444444 4789999999999999988 78888888755  53  67897 59999987555555543333

Phytoene is converted to lycopene by desaturation at four (two symmetrical pairs of) sites. This is achieved by two enzymes (crtP and crtQ) in cyanobacteria (Gloeobacter being an exception) and plants, but by a single enzyme in most other bacteria and in fungi. This single enzyme is called the bacterial-type phytoene desaturase, or CrtI. Most members of this family, part of the larger Pfam family pfam01593, which also contains amino oxidases, are CrtI itself; it is likely that all members act on either phytoene or on related compounds such as dehydrosqualene, for carotenoid biosynthesis.

>PRK04176 ribulose-1,5-biphosphate synthetase; Provisional

Probab=99.18  E-value=3e-10  Score=119.17  Aligned_cols=57  Identities=18%  Similarity=0.254  Sum_probs=42.6

Q ss_pred             HHHHHHhcCCCeEEEcCeEEEEEEEccCCcEEEEEEEec----CC---cEEEEEcCcEEEEccCCcc
Q psy14408        639 YLTPIAGKRTNLYVLKRSKVTKVIINDQNVATGVEYVNS----KG---ETVRVTANKEVILTAGAIA  698 (720)
Q Consensus       639 ~L~~Aa~e~aGVkIi~gt~VtkIl~e~gGrAtGV~v~dt----~G---~e~tIkAkK~VVVAAGa~~  698 (720)
                      ++..+.  +.|++|+.++.|++|+.++++++.||.+.++    .|   ...+|+|+ .||+|+|...
T Consensus       110 L~~~A~--~~Gv~I~~~t~V~dl~~~~~g~V~Gvv~~~~~v~~~g~~~~~~~i~Ak-~VI~ATG~~a  173 (257)
T PRK04176        110 LAAAAI--DAGAKIFNGVSVEDVILREDPRVAGVVINWTPVEMAGLHVDPLTIEAK-AVVDATGHDA  173 (257)
T ss_pred             HHHHHH--HcCCEEEcCceeceeeEeCCCcEEEEEEccccccccCCCCCcEEEEcC-EEEEEeCCCc
Confidence            444444  7899999999999999863448999988652    11   34689997 6999999743

>PRK10157 putative oxidoreductase FixC; Provisional

Probab=99.18  E-value=3.4e-10  Score=126.43  Aligned_cols=67  Identities=25%  Similarity=0.365  Sum_probs=49.3

Q ss_pred             hHHHHHHHHHHhcCCCeEEEcCeEEEEEEEccCCcEEEEEEEecCCcEEEEEcCcEEEEccCCcchHHHHHHcCCCC
Q psy14408        634 SAADAYLTPIAGKRTNLYVLKRSKVTKVIINDQNVATGVEYVNSKGETVRVTANKEVILTAGAIANAQLLLLSGIGP  710 (720)
Q Consensus       634 ~aa~a~L~~Aa~e~aGVkIi~gt~VtkIl~e~gGrAtGV~v~dt~G~e~tIkAkK~VVVAAGa~~Sp~LLl~SGIgp  710 (720)
                      ..+..+|.+.+ ++.|++|+++++|++|+.+ ++++.+|..   +|+  +++|+ .||+|+|. + ..+..+.|+..
T Consensus       108 ~~fD~~L~~~a-~~~Gv~i~~~~~V~~i~~~-~g~v~~v~~---~g~--~i~A~-~VI~A~G~-~-s~l~~~lgl~~  174 (428)
T PRK10157        108 SKFDAWLMEQA-EEAGAQLITGIRVDNLVQR-DGKVVGVEA---DGD--VIEAK-TVILADGV-N-SILAEKLGMAK  174 (428)
T ss_pred             HHHHHHHHHHH-HHCCCEEECCCEEEEEEEe-CCEEEEEEc---CCc--EEECC-EEEEEeCC-C-HHHHHHcCCCC
Confidence            34556777766 5789999999999999887 677666542   343  68997 59999986 3 46667777763

>TIGR00292 thiazole biosynthesis enzyme

Probab=99.17  E-value=5.3e-10  Score=117.21  Aligned_cols=37  Identities=35%  Similarity=0.361  Sum_probs=34.0

Q ss_pred             CCcccEEEECCcHHHHHHHHHHHhcCCCcEEEEccCCC
Q psy14408        431 GDCFDIIIVGASAAGCVLANRLSEVSSLKVLLIEAGGD  468 (720)
Q Consensus       431 d~eyDVVIIGSGiAGLvAA~~LAea~G~KVLVLEKG~~  468 (720)
                      ..++||||||||++||+||+.||++ |++|+||||+..
T Consensus        19 ~~~~DVvIVGgGpAGL~aA~~la~~-G~~V~vlEk~~~   55 (254)
T TIGR00292        19 YAESDVIIVGAGPSGLTAAYYLAKN-GLKVCVLERSLA   55 (254)
T ss_pred             hcCCCEEEECCCHHHHHHHHHHHHC-CCcEEEEecCCC
Confidence            3578999999999999999999999 999999999843

This enzyme is involved in the biosynthesis of the thiamine precursor thiazole, and is repressed by thiamine.This family includes c-thi1, a Citrus gene induced during natural and ethylene induced fruit maturation and is highly homologous to plant and yeast thi genes involved in thiamine biosynthesis.

>PRK13977 myosin-cross-reactive antigen; Provisional

Probab=99.13  E-value=1.1e-09  Score=126.01  Aligned_cols=62  Identities=23%  Similarity=0.290  Sum_probs=46.2

Q ss_pred             HHHHHHHhcCCCeEEEcCeEEEEEEEc-cC--CcEEEEEEEec-CCcEEEEEcCcEEEEccCCcchH
Q psy14408        638 AYLTPIAGKRTNLYVLKRSKVTKVIIN-DQ--NVATGVEYVNS-KGETVRVTANKEVILTAGAIANA  700 (720)
Q Consensus       638 a~L~~Aa~e~aGVkIi~gt~VtkIl~e-~g--GrAtGV~v~dt-~G~e~tIkAkK~VVVAAGa~~Sp  700 (720)
                      .-|.+.+ ++.||+|+++++|++|+.+ ++  ++|+||++.+. .++...+.+++.|||++|++...
T Consensus       230 ~PL~~~L-e~~GV~f~~~t~VtdL~~~~d~~~~~VtgI~~~~~~~~~~I~l~~~DlVivTnGs~t~n  295 (576)
T PRK13977        230 LPLIKYL-EDHGVDFQYGTKVTDIDFDITGGKKTATAIHLTRNGKEETIDLTEDDLVFVTNGSITES  295 (576)
T ss_pred             HHHHHHH-HhCCCEEEeCCEEEEEEEcCCCCceEEEEEEEEeCCceeEEEecCCCEEEEeCCcCccc
Confidence            3444555 6889999999999999985 23  78999999752 23334566667899999987553

>KOG2844|consensus

Probab=99.12  E-value=7.6e-10  Score=126.33  Aligned_cols=62  Identities=21%  Similarity=0.295  Sum_probs=48.7

Q ss_pred             HHHHHHhcCCCeEEEcCeEEEEEEEccCCcEEEEEEEecCCcEEEEEcCcEEEEccCCcchHHHHHHcCCC
Q psy14408        639 YLTPIAGKRTNLYVLKRSKVTKVIINDQNVATGVEYVNSKGETVRVTANKEVILTAGAIANAQLLLLSGIG  709 (720)
Q Consensus       639 ~L~~Aa~e~aGVkIi~gt~VtkIl~e~gGrAtGV~v~dt~G~e~tIkAkK~VVVAAGa~~Sp~LLl~SGIg  709 (720)
                      .|..++ ++.|+.|++++.|++|..+ .++..||++..  |   .|++.+ ||-||| +|...+-.++|++
T Consensus       192 ala~~A-~~~GA~viE~cpV~~i~~~-~~~~~gVeT~~--G---~iet~~-~VNaaG-vWAr~Vg~m~gvk  253 (856)
T KOG2844|consen  192 ALARAA-SALGALVIENCPVTGLHVE-TDKFGGVETPH--G---SIETEC-VVNAAG-VWAREVGAMAGVK  253 (856)
T ss_pred             HHHHHH-HhcCcEEEecCCcceEEee-cCCccceeccC--c---ceecce-EEechh-HHHHHhhhhcCCc
Confidence            344444 5899999999999999998 66666888765  5   699974 999998 5777777778865

>PTZ00363 rab-GDP dissociation inhibitor; Provisional

Probab=99.10  E-value=1.2e-09  Score=122.92  Aligned_cols=41  Identities=24%  Similarity=0.387  Sum_probs=37.7

Q ss_pred             CCcccEEEECCcHHHHHHHHHHHhcCCCcEEEEccCCCCCCC
Q psy14408        431 GDCFDIIIVGASAAGCVLANRLSEVSSLKVLLIEAGGDTPIH  472 (720)
Q Consensus       431 d~eyDVVIIGSGiAGLvAA~~LAea~G~KVLVLEKG~~~~~s  472 (720)
                      +++|||||||+|.+||++|..||++ |+||++|||++..++.
T Consensus         2 ~~~~DViViGtGL~e~ilAa~Ls~~-GkkVLhlD~n~~yGG~   42 (443)
T PTZ00363          2 DETYDVIVCGTGLKECILSGLLSVN-GKKVLHMDRNPYYGGE   42 (443)
T ss_pred             CCcceEEEECCChHHHHHHhhhhhC-CCEEEEecCCCCcCcc
Confidence            4579999999999999999999999 9999999999887655

>PRK08401 L-aspartate oxidase; Provisional

Probab=99.10  E-value=1.8e-09  Score=121.89  Aligned_cols=53  Identities=17%  Similarity=0.292  Sum_probs=39.9

Q ss_pred             HHHHHHHhcCCCeEEEcCeEEEEEEEccCCcEEEEEEEecCCcEEEEEcCcEEEEccCCcch
Q psy14408        638 AYLTPIAGKRTNLYVLKRSKVTKVIINDQNVATGVEYVNSKGETVRVTANKEVILTAGAIAN  699 (720)
Q Consensus       638 a~L~~Aa~e~aGVkIi~gt~VtkIl~e~gGrAtGV~v~dt~G~e~tIkAkK~VVVAAGa~~S  699 (720)
                      ..|...+ ++.|++++.. .|++|+.+ ++++.||.. +  |+  .++|+ .||||||++..
T Consensus       124 ~~L~~~~-~~~gv~i~~~-~v~~l~~~-~g~v~Gv~~-~--g~--~i~a~-~VVLATGG~~~  176 (466)
T PRK08401        124 KILYKHA-RELGVNFIRG-FAEELAIK-NGKAYGVFL-D--GE--LLKFD-ATVIATGGFSG  176 (466)
T ss_pred             HHHHHHH-HhcCCEEEEe-EeEEEEee-CCEEEEEEE-C--CE--EEEeC-eEEECCCcCcC
Confidence            3444444 4789999976 79999877 788999876 2  42  68887 59999999754

>PRK10015 oxidoreductase; Provisional

Probab=99.10  E-value=7.2e-10  Score=123.97  Aligned_cols=66  Identities=26%  Similarity=0.286  Sum_probs=47.7

Q ss_pred             HHHHHHHHHHhcCCCeEEEcCeEEEEEEEccCCcEEEEEEEecCCcEEEEEcCcEEEEccCCcchHHHHHHcCCCC
Q psy14408        635 AADAYLTPIAGKRTNLYVLKRSKVTKVIINDQNVATGVEYVNSKGETVRVTANKEVILTAGAIANAQLLLLSGIGP  710 (720)
Q Consensus       635 aa~a~L~~Aa~e~aGVkIi~gt~VtkIl~e~gGrAtGV~v~dt~G~e~tIkAkK~VVVAAGa~~Sp~LLl~SGIgp  710 (720)
                      .+..||.+.+ ++.|++++.+++|++|+.+ ++++.+|+..   +  .+++|+ .||+|.|. + ..+....|+.+
T Consensus       109 ~fd~~L~~~a-~~~Gv~i~~~~~V~~i~~~-~~~v~~v~~~---~--~~i~A~-~VI~AdG~-~-s~v~~~lg~~~  174 (429)
T PRK10015        109 RLDPWLMEQA-EQAGAQFIPGVRVDALVRE-GNKVTGVQAG---D--DILEAN-VVILADGV-N-SMLGRSLGMVP  174 (429)
T ss_pred             HHHHHHHHHH-HHcCCEEECCcEEEEEEEe-CCEEEEEEeC---C--eEEECC-EEEEccCc-c-hhhhcccCCCc
Confidence            4456676666 5789999999999999887 6777777532   2  379997 69999996 3 34556667654

>PF12831 FAD_oxidored: FAD dependent oxidoreductase; PDB: 3ADA_A 1VRQ_A 1X31_A 3AD9_A 3AD8_A 3AD7_A 2GAG_A 2GAH_A

Probab=99.09  E-value=7.9e-11  Score=131.54  Aligned_cols=63  Identities=25%  Similarity=0.307  Sum_probs=0.0

Q ss_pred             HHHHHhcCCCeEEEcCeEEEEEEEccCCcEEEEEEEecCCcEEEEEcCcEEEEccCCcchHHHHHHcCCC
Q psy14408        640 LTPIAGKRTNLYVLKRSKVTKVIINDQNVATGVEYVNSKGETVRVTANKEVILTAGAIANAQLLLLSGIG  709 (720)
Q Consensus       640 L~~Aa~e~aGVkIi~gt~VtkIl~e~gGrAtGV~v~dt~G~e~tIkAkK~VVVAAGa~~Sp~LLl~SGIg  709 (720)
                      |.+.+ ++.|++|+.++.|.+++.+ +++++||++.+..| ..+|+|+ .||-|+|-   ..|+..+|+.
T Consensus        96 l~~~l-~e~gv~v~~~t~v~~v~~~-~~~i~~V~~~~~~g-~~~i~A~-~~IDaTG~---g~l~~~aG~~  158 (428)
T PF12831_consen   96 LDEML-AEAGVEVLLGTRVVDVIRD-GGRITGVIVETKSG-RKEIRAK-VFIDATGD---GDLAALAGAP  158 (428)
T ss_dssp             ----------------------------------------------------------------------
T ss_pred             ccccc-ccccccccccccccccccc-cccccccccccccc-ccccccc-cccccccc---cccccccccc
Confidence            44444 4789999999999999999 89999999987555 6799997 68889983   4677777664

>COG0644 FixC Dehydrogenases (flavoproteins) [Energy production and conversion]

Probab=99.09  E-value=9.9e-10  Score=121.29  Aligned_cols=66  Identities=23%  Similarity=0.182  Sum_probs=47.0

Q ss_pred             HHHHHHHHHHhcCCCeEEEcCeEEEEEEEccCCcEEEEEEEecCCcEEEEEcCcEEEEccCCcchHHHHHHcCCC
Q psy14408        635 AADAYLTPIAGKRTNLYVLKRSKVTKVIINDQNVATGVEYVNSKGETVRVTANKEVILTAGAIANAQLLLLSGIG  709 (720)
Q Consensus       635 aa~a~L~~Aa~e~aGVkIi~gt~VtkIl~e~gGrAtGV~v~dt~G~e~tIkAkK~VVVAAGa~~Sp~LLl~SGIg  709 (720)
                      ....||+..+ ++.|++++.+++|+.++.+ ++.+.++....  +  .+++|+ .||.|.|.  ...+....|+.
T Consensus        96 ~fd~~La~~A-~~aGae~~~~~~~~~~~~~-~~~~~~~~~~~--~--~e~~a~-~vI~AdG~--~s~l~~~lg~~  161 (396)
T COG0644          96 KFDKWLAERA-EEAGAELYPGTRVTGVIRE-DDGVVVGVRAG--D--DEVRAK-VVIDADGV--NSALARKLGLK  161 (396)
T ss_pred             HhhHHHHHHH-HHcCCEEEeceEEEEEEEe-CCcEEEEEEcC--C--EEEEcC-EEEECCCc--chHHHHHhCCC
Confidence            3446787766 6899999999999999998 54433333322  2  689996 57777774  45667777777

>KOG0042|consensus

Probab=99.09  E-value=2e-11  Score=136.49  Aligned_cols=83  Identities=17%  Similarity=0.192  Sum_probs=65.2

Q ss_pred             cccccccCCccccCcchhHHHHHHHHHHhcCCCeEEEcCeEEEEEEEccCCcEEEEEEEec-CCcEEEEEcCcEEEEccC
Q psy14408        617 DVGFAELPGMTRYGLRFSAADAYLTPIAGKRTNLYVLKRSKVTKVIINDQNVATGVEYVNS-KGETVRVTANKEVILTAG  695 (720)
Q Consensus       617 ~~G~~~~~~g~~~G~k~~aa~a~L~~Aa~e~aGVkIi~gt~VtkIl~e~gGrAtGV~v~dt-~G~e~tIkAkK~VVVAAG  695 (720)
                      .+|.+-...|.....|.....++  .|+  +.|+.+...++|.+++.+++|++.|++++|. +|++..|+|+ .||-|||
T Consensus       210 L~Ga~VYyDGQ~nDaRmnl~vAl--TA~--r~GA~v~Nh~ev~~Llkd~~~kv~Ga~~rD~iTG~e~~I~Ak-~VVNATG  284 (680)
T KOG0042|consen  210 LKGAMVYYDGQHNDARMNLAVAL--TAA--RNGATVLNHVEVVSLLKDKDGKVIGARARDHITGKEYEIRAK-VVVNATG  284 (680)
T ss_pred             ceeEEEEecCCCchHHHHHHHHH--HHH--hcchhhhhHHHHHHHhhCCCCceeeeEEEEeecCcEEEEEEE-EEEeCCC
Confidence            77888777777777765555322  244  7899999999999999986788999999986 7999999996 6888999


Q ss_pred             CcchHHHHHH
Q psy14408        696 AIANAQLLLL  705 (720)
Q Consensus       696 a~~Sp~LLl~  705 (720)
                      .+ +-.|.++
T Consensus       285 pf-sDsIr~M  293 (680)
T KOG0042|consen  285 PF-SDSIRKM  293 (680)
T ss_pred             Cc-cHHHHhh
Confidence            86 4455544

>TIGR02733 desat_CrtD C-3',4' desaturase CrtD

Probab=99.09  E-value=1.4e-09  Score=122.98  Aligned_cols=63  Identities=27%  Similarity=0.245  Sum_probs=45.5

Q ss_pred             HHHHHHHhcCCCeEEEcCeEEEEEEEccCCcEEEEEEEec-CCcEEEEEcCcEEEEccCCcchHHHH
Q psy14408        638 AYLTPIAGKRTNLYVLKRSKVTKVIINDQNVATGVEYVNS-KGETVRVTANKEVILTAGAIANAQLL  703 (720)
Q Consensus       638 a~L~~Aa~e~aGVkIi~gt~VtkIl~e~gGrAtGV~v~dt-~G~e~tIkAkK~VVVAAGa~~Sp~LL  703 (720)
                      ..|.+.+ ++.|++|+++++|++|+.+ +++++||++.+. .|+..++.|+ .||+++.......||
T Consensus       236 ~aL~~~~-~~~G~~i~~~~~V~~I~~~-~~~~~gv~~~~~~~~~~~~~~ad-~VI~~~~~~~~~~ll  299 (492)
T TIGR02733       236 DRLVEAL-KRDGGNLLTGQRVTAIHTK-GGRAGWVVVVDSRKQEDLNVKAD-DVVANLPPQSLLELL  299 (492)
T ss_pred             HHHHHHH-HhcCCEEeCCceEEEEEEe-CCeEEEEEEecCCCCceEEEECC-EEEECCCHHHHHHhc
Confidence            3444444 4689999999999999998 788889988762 2223478897 599988875444433

Members of this family are slr1293, a carotenoid biosynthesis protein which was shown to be the C-3',4' desaturase (CrtD) of myxoxanthophyll biosynthesis in Synechocystis sp. strain PCC 6803, and close homologs (presumed to be functionally equivalent) from other cyanobacteria, where myxoxanthophyll biosynthesis is either known or expected. This enzyme can act on neurosporene and so presumably catalyzes the first step that is committed to myxoxanthophyll.

>COG1053 SdhA Succinate dehydrogenase/fumarate reductase, flavoprotein subunit [Energy production and conversion]

Probab=99.07  E-value=1.1e-09  Score=126.45  Aligned_cols=52  Identities=23%  Similarity=0.317  Sum_probs=42.2

Q ss_pred             cCCCeEEEcCeEEEEEEEccCCcEEEEEEEec-CCcEEEEEcCcEEEEccCCcc
Q psy14408        646 KRTNLYVLKRSKVTKVIINDQNVATGVEYVNS-KGETVRVTANKEVILTAGAIA  698 (720)
Q Consensus       646 e~aGVkIi~gt~VtkIl~e~gGrAtGV~v~dt-~G~e~tIkAkK~VVVAAGa~~  698 (720)
                      +..+++|+.+..|++|++++++.|.||...+. +|+...++|+ .||+|+|+.+
T Consensus       150 ~~~~~~~~~~~~~~~l~~~~~~~v~Gvv~~~~~~g~~~~~~ak-avilaTGG~g  202 (562)
T COG1053         150 KFSGIEIFDEYFVLDLLVDDGGGVAGVVARDLRTGELYVFRAK-AVILATGGAG  202 (562)
T ss_pred             HhhcchhhhhhhhhhheecCCCcEEEEEEEEecCCcEEEEecC-cEEEccCCce
Confidence            34678999999999999883445899988876 5777778885 6999999977

>TIGR02485 CobZ_N-term precorrin 3B synthase CobZ

Probab=99.05  E-value=2.7e-09  Score=118.99  Aligned_cols=61  Identities=20%  Similarity=0.233  Sum_probs=45.4

Q ss_pred             HHHHHHhcCCCeEEEcCeEEEEEEEcc-CCcEEEEEEEecCCcEEEEEcCcEEEEccCCcchHHHHH
Q psy14408        639 YLTPIAGKRTNLYVLKRSKVTKVIIND-QNVATGVEYVNSKGETVRVTANKEVILTAGAIANAQLLL  704 (720)
Q Consensus       639 ~L~~Aa~e~aGVkIi~gt~VtkIl~e~-gGrAtGV~v~dt~G~e~tIkAkK~VVVAAGa~~Sp~LLl  704 (720)
                      .|...+ ++.|++|+++++|++|+.++ +++++||+..+  +. .+|+|+ .||||+|++....-++
T Consensus       128 ~L~~~a-~~~Gv~i~~~~~v~~l~~~~~~g~v~gv~~~~--~~-~~i~ak-~VIlAtGG~~~n~~~~  189 (432)
T TIGR02485       128 ALYSSA-ERLGVEIRYGIAVDRIPPEAFDGAHDGPLTTV--GT-HRITTQ-ALVLAAGGLGANRDWL  189 (432)
T ss_pred             HHHHHH-HHcCCEEEeCCEEEEEEecCCCCeEEEEEEcC--Cc-EEEEcC-EEEEcCCCcccCHHHH
Confidence            344444 47899999999999998762 57889988643  22 478896 6999999987655433

CobZ is essential for cobalamin biosynthesis (by knockout of the R. capsulatus gene ) and is complemented by the characterized precorrin 3B synthase CobG. The enzyme has been shown to contain flavin, heme and Fe-S cluster cofactors and is believed to require dioxygen as a substrate. This model identifies the N-terminal portion of the R. capsulatus gene which, in other species exists as a separate protein. The C-terminal portion is homologous to the 2-component signal transduction system protein CitB (TIGR02484).

>PF01494 FAD_binding_3: FAD binding domain; InterPro: IPR002938 Monooxygenases incorporate one hydroxyl group into substrates and are found in many metabolic pathways

Probab=99.01  E-value=1.6e-09  Score=113.98  Aligned_cols=70  Identities=17%  Similarity=0.149  Sum_probs=45.6

Q ss_pred             HHHHHHHHHHhcCCCeEEEcCeEEEEEEEccCCcEEEEEEEecCCcEEEEEcCcEEEEccCCcchHHHHHHcCCC
Q psy14408        635 AADAYLTPIAGKRTNLYVLKRSKVTKVIINDQNVATGVEYVNSKGETVRVTANKEVILTAGAIANAQLLLLSGIG  709 (720)
Q Consensus       635 aa~a~L~~Aa~e~aGVkIi~gt~VtkIl~e~gGrAtGV~v~dt~G~e~tIkAkK~VVVAAGa~~Sp~LLl~SGIg  709 (720)
                      ....+|.+.+ ++.|++|+.+++|+.+..+ ++.++++.....+|+..+|+|+  +||+|-+.+|.. -...|+.
T Consensus       112 ~l~~~L~~~~-~~~gv~i~~~~~v~~~~~d-~~~~~~~~~~~~~g~~~~i~ad--lvVgADG~~S~v-R~~l~~~  181 (356)
T PF01494_consen  112 ELDRALREEA-EERGVDIRFGTRVVSIEQD-DDGVTVVVRDGEDGEEETIEAD--LVVGADGAHSKV-RKQLGID  181 (356)
T ss_dssp             HHHHHHHHHH-HHHTEEEEESEEEEEEEEE-TTEEEEEEEETCTCEEEEEEES--EEEE-SGTT-HH-HHHTTGG
T ss_pred             HHHHhhhhhh-hhhhhhheeeeeccccccc-ccccccccccccCCceeEEEEe--eeecccCcccch-hhhcccc
Confidence            3445666665 4678999999999999987 6665555444436777789997  555555556643 3444444

In this reaction, two atoms of dioxygen are reduced to one hydroxyl group and one H2O molecule by the concomitant oxidation of NAD(P)H []. P-hydroxybenzoate hydroxylase from Pseudomonas fluorescens contains this sequence motif (present in in flavoprotein hydroxylases) with a putative dual function in FAD and NADPH binding [].; PDB: 2Y6R_B 2XYO_C 2Y6Q_C 3P9U_D 2XDO_C 1FOH_D 1PN0_A 3IHG_C 2QA2_A 2VOU_C ....

>PRK06185 hypothetical protein; Provisional

Probab=99.01  E-value=7.8e-09  Score=113.43  Aligned_cols=68  Identities=22%  Similarity=0.263  Sum_probs=47.7

Q ss_pred             HHHHHHHhcCCCeEEEcCeEEEEEEEccCCcEEEEEEEecCCcEEEEEcCcEEEEccCCcchHHHHHHcCCCC
Q psy14408        638 AYLTPIAGKRTNLYVLKRSKVTKVIINDQNVATGVEYVNSKGETVRVTANKEVILTAGAIANAQLLLLSGIGP  710 (720)
Q Consensus       638 a~L~~Aa~e~aGVkIi~gt~VtkIl~e~gGrAtGV~v~dt~G~e~tIkAkK~VVVAAGa~~Sp~LLl~SGIgp  710 (720)
                      .+|.+++++..|++++.+++|++++.+ ++++.||.+...+| +.+++|+ .||.|.|+ ++. +-...|+..
T Consensus       112 ~~L~~~~~~~~~v~i~~~~~v~~~~~~-~~~v~~v~~~~~~g-~~~i~a~-~vI~AdG~-~S~-vr~~~gi~~  179 (407)
T PRK06185        112 DFLAEEASAYPNFTLRMGAEVTGLIEE-GGRVTGVRARTPDG-PGEIRAD-LVVGADGR-HSR-VRALAGLEV  179 (407)
T ss_pred             HHHHHHHhhCCCcEEEeCCEEEEEEEe-CCEEEEEEEEcCCC-cEEEEeC-EEEECCCC-chH-HHHHcCCCc
Confidence            344444313468999999999999988 77888888765334 3578997 58888886 453 556667754

>PRK07208 hypothetical protein; Provisional

Probab=99.00  E-value=6.6e-09  Score=116.80  Aligned_cols=40  Identities=25%  Similarity=0.237  Sum_probs=36.1

Q ss_pred             CcccEEEECCcHHHHHHHHHHHhcCCCcEEEEccCCCCCCC
Q psy14408        432 DCFDIIIVGASAAGCVLANRLSEVSSLKVLLIEAGGDTPIH  472 (720)
Q Consensus       432 ~eyDVVIIGSGiAGLvAA~~LAea~G~KVLVLEKG~~~~~s  472 (720)
                      ...||||||||++||+||++|+++ |++|+|+||....++.
T Consensus         3 ~~~~vvIiGaGisGL~aA~~L~~~-g~~v~v~E~~~~~GG~   42 (479)
T PRK07208          3 NKKSVVIIGAGPAGLTAAYELLKR-GYPVTVLEADPVVGGI   42 (479)
T ss_pred             CCCcEEEECcCHHHHHHHHHHHHC-CCcEEEEecCCCCCce
Confidence            456999999999999999999999 9999999998877554

>KOG2853|consensus

Probab=99.00  E-value=8.9e-09  Score=110.44  Aligned_cols=69  Identities=20%  Similarity=0.172  Sum_probs=48.2

Q ss_pred             HHHHHHHhcCCCeEEEcCeEEEEEEEc---------cCC-------cEEEEEEEecCCcEEEEEcCcEEEEccCCcchHH
Q psy14408        638 AYLTPIAGKRTNLYVLKRSKVTKVIIN---------DQN-------VATGVEYVNSKGETVRVTANKEVILTAGAIANAQ  701 (720)
Q Consensus       638 a~L~~Aa~e~aGVkIi~gt~VtkIl~e---------~gG-------rAtGV~v~dt~G~e~tIkAkK~VVVAAGa~~Sp~  701 (720)
                      ++-+++.  ..|+.+..+ .|+..+++         ++|       ++.||.++-.++-++.+++. -+|+|||+ |+-+
T Consensus       248 ~~rrk~~--~lGv~f~~G-eV~~Fef~sqr~v~~~tDd~t~~~~~~~i~~vvV~m~d~~~r~vk~a-l~V~aAGa-~s~Q  322 (509)
T KOG2853|consen  248 GIRRKAI--TLGVQFVKG-EVVGFEFESQRAVHAFTDDGTAKLRAQRISGVVVRMNDALARPVKFA-LCVNAAGA-WSGQ  322 (509)
T ss_pred             HHHHHhh--hhcceEecc-eEEEEEEecccceeeecccchhhhhhcccceeEEecCchhcCceeEE-EEEeccCc-cHHH
Confidence            4444444  679999866 57777665         233       45666665434556789986 58889997 8999


Q ss_pred             HHHHcCCCCc
Q psy14408        702 LLLLSGIGPK  711 (720)
Q Consensus       702 LLl~SGIgpk  711 (720)
                      +....|||-.
T Consensus       323 vArlAgIG~g  332 (509)
T KOG2853|consen  323 VARLAGIGKG  332 (509)
T ss_pred             HHHHhccCCC
Confidence            9999999843

>COG3573 Predicted oxidoreductase [General function prediction only]

Probab=98.99  E-value=2.2e-09  Score=114.72  Aligned_cols=69  Identities=20%  Similarity=0.217  Sum_probs=50.8

Q ss_pred             hHHHHHHHHHHhcCCCeEEEcCeEEEEEEEccCCcEEEEEEEec------CC--------cEEEEEcCcEEEEccCCcch
Q psy14408        634 SAADAYLTPIAGKRTNLYVLKRSKVTKVIINDQNVATGVEYVNS------KG--------ETVRVTANKEVILTAGAIAN  699 (720)
Q Consensus       634 ~aa~a~L~~Aa~e~aGVkIi~gt~VtkIl~e~gGrAtGV~v~dt------~G--------~e~tIkAkK~VVVAAGa~~S  699 (720)
                      ..++..++++. ++.-++|...++|.+|+.. +++++||+..-.      .|        +.++++|. .|||+.|+++-
T Consensus       153 ~pFvr~~re~~-~~~~v~f~~RHrV~~l~~t-~grvtGv~GdVLeps~v~RG~~SSR~~~GdFef~A~-aviv~SGGIGG  229 (552)
T COG3573         153 EPFVRRLREAQ-RRGRVTFRFRHRVDGLTTT-GGRVTGVRGDVLEPSDVERGQPSSREVVGDFEFSAS-AVIVASGGIGG  229 (552)
T ss_pred             hHHHHHHHHHH-hCCceEEEeeeeccceEee-CCeEeeecccccCCCccccCCCccceeecceEEeee-eEEEecCCcCC
Confidence            34555666666 3445999999999999998 999999976421      11        23678886 69999999887


Q ss_pred             HHHHHH
Q psy14408        700 AQLLLL  705 (720)
Q Consensus       700 p~LLl~  705 (720)
                      ..-|.+
T Consensus       230 nhelVR  235 (552)
T COG3573         230 NHELVR  235 (552)
T ss_pred             CHHHHH
Confidence            766643

>KOG1298|consensus

Probab=98.99  E-value=1.4e-09  Score=118.06  Aligned_cols=67  Identities=27%  Similarity=0.346  Sum_probs=50.5

Q ss_pred             HHHHHHHhcCCCeEEEcCeEEEEEEEccCCcEEEEEEEecCCcEEEEEcCcEEEEccCCcchHHHHHHcCCCC
Q psy14408        638 AYLTPIAGKRTNLYVLKRSKVTKVIINDQNVATGVEYVNSKGETVRVTANKEVILTAGAIANAQLLLLSGIGP  710 (720)
Q Consensus       638 a~L~~Aa~e~aGVkIi~gt~VtkIl~e~gGrAtGV~v~dt~G~e~tIkAkK~VVVAAGa~~Sp~LLl~SGIgp  710 (720)
                      .-|++++....+|++.+++ |.+++.| +|.+.||++.+..|++.+..|. -.|||-|.+..   |.+|-..+
T Consensus       151 q~lR~ka~slpNV~~eeGt-V~sLlee-~gvvkGV~yk~k~gee~~~~Ap-LTvVCDGcfSn---lRrsL~~~  217 (509)
T KOG1298|consen  151 QRLRKKAASLPNVRLEEGT-VKSLLEE-EGVVKGVTYKNKEGEEVEAFAP-LTVVCDGCFSN---LRRSLCDP  217 (509)
T ss_pred             HHHHHHHhcCCCeEEeeee-HHHHHhc-cCeEEeEEEecCCCceEEEecc-eEEEecchhHH---HHHHhcCC
Confidence            3455544357799998774 8888877 8899999999988888899997 59999998644   45654443

>COG0029 NadB Aspartate oxidase [Coenzyme metabolism]

Probab=98.97  E-value=4.4e-09  Score=117.71  Aligned_cols=58  Identities=29%  Similarity=0.462  Sum_probs=44.9

Q ss_pred             HHHHHHHhcCCCeEEEcCeEEEEEEEccCC-cEEEEEEEecCCcEEEEEcCcEEEEccCCcc
Q psy14408        638 AYLTPIAGKRTNLYVLKRSKVTKVIINDQN-VATGVEYVNSKGETVRVTANKEVILTAGAIA  698 (720)
Q Consensus       638 a~L~~Aa~e~aGVkIi~gt~VtkIl~e~gG-rAtGV~v~dt~G~e~tIkAkK~VVVAAGa~~  698 (720)
                      .++..+. ++.+++|++++.+.+|+.+ ++ .+.||.+.+..+....+.|+ .||||+|+++
T Consensus       138 ~L~~~v~-~~p~I~v~e~~~a~~li~~-~~~~~~Gv~~~~~~~~~~~~~a~-~vVLATGG~g  196 (518)
T COG0029         138 ALLKKVR-NRPNITVLEGAEALDLIIE-DGIGVAGVLVLNRNGELGTFRAK-AVVLATGGLG  196 (518)
T ss_pred             HHHHHHh-cCCCcEEEecchhhhhhhc-CCceEeEEEEecCCCeEEEEecC-eEEEecCCCc
Confidence            3444444 5679999999999999998 66 55699998743346789997 6999999864

>PF06039 Mqo: Malate:quinone oxidoreductase (Mqo); InterPro: IPR006231 The membrane-associated enzyme, malate:quinone-oxidoreductase, is an alternative to the better-known NAD-dependent malate dehydrogenase as part of the TCA cycle

Probab=98.95  E-value=2.3e-08  Score=111.74  Aligned_cols=71  Identities=24%  Similarity=0.237  Sum_probs=54.4

Q ss_pred             HHHHHHHhcCCCeEEEcCeEEEEEEEccCCcEEEEEEEec-CCcEEEEEcCcEEEEccCCcchHHHHHHcCCCCcc
Q psy14408        638 AYLTPIAGKRTNLYVLKRSKVTKVIINDQNVATGVEYVNS-KGETVRVTANKEVILTAGAIANAQLLLLSGIGPKA  712 (720)
Q Consensus       638 a~L~~Aa~e~aGVkIi~gt~VtkIl~e~gGrAtGV~v~dt-~G~e~tIkAkK~VVVAAGa~~Sp~LLl~SGIgpk~  712 (720)
                      .++..+. ++.|++++.+++|++|.+.++| .+-|.+.+. +|+.++|+|+ -|+|.||+ ++-.||+++||....
T Consensus       186 ~l~~~l~-~~~~~~~~~~~eV~~i~r~~dg-~W~v~~~~~~~~~~~~v~a~-FVfvGAGG-~aL~LLqksgi~e~~  257 (488)
T PF06039_consen  186 QLVEYLQ-KQKGFELHLNHEVTDIKRNGDG-RWEVKVKDLKTGEKREVRAK-FVFVGAGG-GALPLLQKSGIPEGK  257 (488)
T ss_pred             HHHHHHH-hCCCcEEEecCEeCeeEECCCC-CEEEEEEecCCCCeEEEECC-EEEECCch-HhHHHHHHcCChhhc
Confidence            4454444 4569999999999999998334 355666554 5777899997 69999998 688899999996543

The reduction of a quinone rather than NAD+ makes the reaction essentially irreversible in the direction of malate oxidation to oxaloacetate. Both forms of malate dehydrogenase are active in Escherichia coli; disruption of this form causes less phenotypic change. In some bacteria, this form is the only or the more important malate dehydrogenase []. ; GO: 0008924 malate dehydrogenase (quinone) activity, 0006099 tricarboxylic acid cycle, 0055114 oxidation-reduction process

>KOG4254|consensus

Probab=98.95  E-value=5.5e-09  Score=115.38  Aligned_cols=71  Identities=21%  Similarity=0.294  Sum_probs=56.5

Q ss_pred             HHHHHHHHHHhcCCCeEEEcCeEEEEEEEccCCcEEEEEEEecCCcEEEEEcCcEEEEccCCcchHHHHHHcCCCCcc
Q psy14408        635 AADAYLTPIAGKRTNLYVLKRSKVTKVIINDQNVATGVEYVNSKGETVRVTANKEVILTAGAIANAQLLLLSGIGPKA  712 (720)
Q Consensus       635 aa~a~L~~Aa~e~aGVkIi~gt~VtkIl~e~gGrAtGV~v~dt~G~e~tIkAkK~VVVAAGa~~Sp~LLl~SGIgpk~  712 (720)
                      +....+...+ +++|++|.+...|++|+.| +|+|.||++.+  |.  +++++ .||.+|+.+.|-.-|+.-+..|++
T Consensus       265 avs~aia~~~-~~~GaeI~tka~Vq~Illd-~gka~GV~L~d--G~--ev~sk-~VvSNAt~~~Tf~kLlp~e~LPee  335 (561)
T KOG4254|consen  265 AVSFAIAEGA-KRAGAEIFTKATVQSILLD-SGKAVGVRLAD--GT--EVRSK-IVVSNATPWDTFEKLLPGEALPEE  335 (561)
T ss_pred             HHHHHHHHHH-Hhccceeeehhhhhheecc-CCeEEEEEecC--Cc--EEEee-eeecCCchHHHHHHhCCCccCCch
Confidence            3334455555 5899999999999999999 79999999998  75  57774 699999988888677766666655

>PRK07364 2-octaprenyl-6-methoxyphenyl hydroxylase; Validated

Probab=98.91  E-value=2.3e-08  Score=109.94  Aligned_cols=40  Identities=33%  Similarity=0.481  Sum_probs=35.3

Q ss_pred             ccCCCcccEEEECCcHHHHHHHHHHHhcCCCcEEEEccCCC
Q psy14408        428 VKSGDCFDIIIVGASAAGCVLANRLSEVSSLKVLLIEAGGD  468 (720)
Q Consensus       428 I~~d~eyDVVIIGSGiAGLvAA~~LAea~G~KVLVLEKG~~  468 (720)
                      +....++||||||||++|+++|+.|+++ |++|+||||...
T Consensus        13 ~~~~~~~dV~IvGaG~aGl~~A~~L~~~-G~~v~v~E~~~~   52 (415)
T PRK07364         13 STRSLTYDVAIVGGGIVGLTLAAALKDS-GLRIALIEAQPA   52 (415)
T ss_pred             CCCccccCEEEECcCHHHHHHHHHHhcC-CCEEEEEecCCc
Confidence            3344568999999999999999999999 999999999853

>PRK07233 hypothetical protein; Provisional

Probab=98.89  E-value=2.1e-08  Score=109.97  Aligned_cols=37  Identities=32%  Similarity=0.331  Sum_probs=34.3

Q ss_pred             cEEEECCcHHHHHHHHHHHhcCCCcEEEEccCCCCCCC
Q psy14408        435 DIIIVGASAAGCVLANRLSEVSSLKVLLIEAGGDTPIH  472 (720)
Q Consensus       435 DVVIIGSGiAGLvAA~~LAea~G~KVLVLEKG~~~~~s  472 (720)
                      +|||||||++||+||+.|+++ |++|+||||....++.
T Consensus         1 ~vvVIGaGiaGL~aA~~L~~~-G~~v~vlE~~~~~GG~   37 (434)
T PRK07233          1 KIAIVGGGIAGLAAAYRLAKR-GHEVTVFEADDQLGGL   37 (434)
T ss_pred             CEEEECCCHHHHHHHHHHHHC-CCcEEEEEeCCCCCCc
Confidence            599999999999999999999 9999999999887654

>PRK08773 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Validated

Probab=98.89  E-value=2.4e-08  Score=109.34  Aligned_cols=36  Identities=31%  Similarity=0.415  Sum_probs=33.6

Q ss_pred             CCcccEEEECCcHHHHHHHHHHHhcCCCcEEEEccCC
Q psy14408        431 GDCFDIIIVGASAAGCVLANRLSEVSSLKVLLIEAGG  467 (720)
Q Consensus       431 d~eyDVVIIGSGiAGLvAA~~LAea~G~KVLVLEKG~  467 (720)
                      +..+||||||||++|+++|+.|+++ |++|+||||..
T Consensus         4 ~~~~dV~IvGaG~aGl~~A~~La~~-G~~v~liE~~~   39 (392)
T PRK08773          4 RSRRDAVIVGGGVVGAACALALADA-GLSVALVEGRE   39 (392)
T ss_pred             CCCCCEEEECcCHHHHHHHHHHhcC-CCEEEEEeCCC
Confidence            4568999999999999999999999 99999999984

>PRK06184 hypothetical protein; Provisional

Probab=98.88  E-value=4.5e-08  Score=111.26  Aligned_cols=36  Identities=33%  Similarity=0.475  Sum_probs=33.4

Q ss_pred             CcccEEEECCcHHHHHHHHHHHhcCCCcEEEEccCCC
Q psy14408        432 DCFDIIIVGASAAGCVLANRLSEVSSLKVLLIEAGGD  468 (720)
Q Consensus       432 ~eyDVVIIGSGiAGLvAA~~LAea~G~KVLVLEKG~~  468 (720)
                      .++||||||||++||++|+.|+++ |++|+||||...
T Consensus         2 ~~~dVlIVGaGpaGl~~A~~La~~-Gi~v~viE~~~~   37 (502)
T PRK06184          2 TTTDVLIVGAGPTGLTLAIELARR-GVSFRLIEKAPE   37 (502)
T ss_pred             CCCcEEEECCCHHHHHHHHHHHHC-CCcEEEEeCCCC
Confidence            468999999999999999999999 999999999743

>PLN02985 squalene monooxygenase

Probab=98.87  E-value=3.6e-08  Score=113.03  Aligned_cols=38  Identities=34%  Similarity=0.479  Sum_probs=35.0

Q ss_pred             ccCCCcccEEEECCcHHHHHHHHHHHhcCCCcEEEEccC
Q psy14408        428 VKSGDCFDIIIVGASAAGCVLANRLSEVSSLKVLLIEAG  466 (720)
Q Consensus       428 I~~d~eyDVVIIGSGiAGLvAA~~LAea~G~KVLVLEKG  466 (720)
                      ..++..+||||||||++|+++|+.|+++ |++|+||||.
T Consensus        38 ~~~~~~~DViIVGAG~aGlalA~aLa~~-G~~V~vlEr~   75 (514)
T PLN02985         38 ERKDGATDVIIVGAGVGGSALAYALAKD-GRRVHVIERD   75 (514)
T ss_pred             cCcCCCceEEEECCCHHHHHHHHHHHHc-CCeEEEEECc
Confidence            4466788999999999999999999999 9999999997

>PRK07333 2-octaprenyl-6-methoxyphenyl hydroxylase; Provisional

Probab=98.85  E-value=3.5e-08  Score=107.84  Aligned_cols=33  Identities=30%  Similarity=0.504  Sum_probs=31.3

Q ss_pred             ccEEEECCcHHHHHHHHHHHhcCC--CcEEEEccCC
Q psy14408        434 FDIIIVGASAAGCVLANRLSEVSS--LKVLLIEAGG  467 (720)
Q Consensus       434 yDVVIIGSGiAGLvAA~~LAea~G--~KVLVLEKG~  467 (720)
                      +||||||||++||++|+.|+++ |  ++|+||||..
T Consensus         2 ~dv~IvGaG~aGl~~A~~L~~~-g~g~~v~liE~~~   36 (403)
T PRK07333          2 CDVVIAGGGYVGLALAVALKQA-APHLPVTVVDAAP   36 (403)
T ss_pred             CCEEEECccHHHHHHHHHHhcC-CCCCEEEEEeCCC
Confidence            7999999999999999999998 6  9999999984

>PRK08244 hypothetical protein; Provisional

Probab=98.84  E-value=5.6e-08  Score=110.13  Aligned_cols=35  Identities=29%  Similarity=0.513  Sum_probs=32.7

Q ss_pred             cccEEEECCcHHHHHHHHHHHhcCCCcEEEEccCCC
Q psy14408        433 CFDIIIVGASAAGCVLANRLSEVSSLKVLLIEAGGD  468 (720)
Q Consensus       433 eyDVVIIGSGiAGLvAA~~LAea~G~KVLVLEKG~~  468 (720)
                      ++||||||||++||++|+.|+++ |++|+||||...
T Consensus         2 ~~dVlIVGaGpaGl~lA~~L~~~-G~~v~viEr~~~   36 (493)
T PRK08244          2 KYEVIIIGGGPVGLMLASELALA-GVKTCVIERLKE   36 (493)
T ss_pred             CCCEEEECCCHHHHHHHHHHHHC-CCcEEEEecCCC
Confidence            47999999999999999999999 999999999843

>TIGR03377 glycerol3P_GlpA glycerol-3-phosphate dehydrogenase, anaerobic, A subunit

Probab=98.84  E-value=5.9e-08  Score=110.91  Aligned_cols=122  Identities=23%  Similarity=0.267  Sum_probs=76.9

Q ss_pred             CcccccccccccchHHHHHHHHHHHHcCCCCCC----------CCCCccccccccccCCccccCcchhHHHHHHHHHHhc
Q psy14408        577 GYLPVGLFKNKENNIIREIFETSAQELGYPCPK----------DMNDRYVDVGFAELPGMTRYGLRFSAADAYLTPIAGK  646 (720)
Q Consensus       577 G~L~va~~~~~~~~~~~q~llea~rklG~~~~~----------d~ng~~~~~G~~~~~~g~~~G~k~~aa~a~L~~Aa~e  646 (720)
                      |.|.+......  ....+.+++.+++.|++...          +..... ..|......+....  .....+++..|.  
T Consensus        67 g~L~va~~~~~--~~~~~~~~~~~~~~gi~~~~l~~~e~~~~~P~l~~~-~~ga~~~~dg~vdp--~~l~~al~~~A~--  139 (516)
T TIGR03377        67 GGLFITLPEDD--LEFQKQFLAACREAGIPAEEIDPAEALRLEPNLNPD-LIGAVKVPDGTVDP--FRLVAANVLDAQ--  139 (516)
T ss_pred             CceEEecCccc--HHHHHHHHHHHHHCCCCceEECHHHHHHHCCCCChh-heEEEEeCCcEECH--HHHHHHHHHHHH--
Confidence            33444433333  23445556666667765330          111112 34544444432221  222334555555  


Q ss_pred             CCCeEEEcCeEEEEEEEccCCcEEEEEEEec-CCcEEEEEcCcEEEEccCCcchHHHHHHcCC
Q psy14408        647 RTNLYVLKRSKVTKVIINDQNVATGVEYVNS-KGETVRVTANKEVILTAGAIANAQLLLLSGI  708 (720)
Q Consensus       647 ~aGVkIi~gt~VtkIl~e~gGrAtGV~v~dt-~G~e~tIkAkK~VVVAAGa~~Sp~LLl~SGI  708 (720)
                      +.|++|+++++|++|+.+ ++++.||++.++ +|++.+|+|+ .||+|||+ |+..|+...|+
T Consensus       140 ~~Ga~i~~~t~V~~i~~~-~~~v~gv~v~~~~~g~~~~i~a~-~VVnAaG~-wa~~l~~~~g~  199 (516)
T TIGR03377       140 EHGARIFTYTKVTGLIRE-GGRVTGVKVEDHKTGEEERIEAQ-VVINAAGI-WAGRIAEYAGL  199 (516)
T ss_pred             HcCCEEEcCcEEEEEEEE-CCEEEEEEEEEcCCCcEEEEEcC-EEEECCCc-chHHHHHhcCC
Confidence            889999999999999988 888999998764 4656789997 59999996 78888888776

Members of this protein family are the A subunit, product of the glpA gene, of a three-subunit, membrane-anchored, FAD-dependent anaerobic glycerol-3-phosphate dehydrogenase.

>PRK05192 tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA; Validated

Probab=98.82  E-value=3.4e-08  Score=114.70  Aligned_cols=34  Identities=32%  Similarity=0.595  Sum_probs=32.4

Q ss_pred             CcccEEEECCcHHHHHHHHHHHhcCCCcEEEEccC
Q psy14408        432 DCFDIIIVGASAAGCVLANRLSEVSSLKVLLIEAG  466 (720)
Q Consensus       432 ~eyDVVIIGSGiAGLvAA~~LAea~G~KVLVLEKG  466 (720)
                      .+|||||||||.||+.||+.||+. |++|+|||++
T Consensus         3 ~~yDVIVVGGGpAG~eAA~~aAR~-G~kV~LiE~~   36 (618)
T PRK05192          3 EEYDVIVVGGGHAGCEAALAAARM-GAKTLLLTHN   36 (618)
T ss_pred             ccceEEEECchHHHHHHHHHHHHc-CCcEEEEecc
Confidence            468999999999999999999999 9999999986

>TIGR02731 phytoene_desat phytoene desaturase

Probab=98.82  E-value=7.3e-08  Score=107.75  Aligned_cols=57  Identities=12%  Similarity=0.173  Sum_probs=41.4

Q ss_pred             HHHHHhcCCCeEEEcCeEEEEEEEccCCcEEEEEEEecCC-cEEEEEcCcEEEEccCCcc
Q psy14408        640 LTPIAGKRTNLYVLKRSKVTKVIINDQNVATGVEYVNSKG-ETVRVTANKEVILTAGAIA  698 (720)
Q Consensus       640 L~~Aa~e~aGVkIi~gt~VtkIl~e~gGrAtGV~v~dt~G-~e~tIkAkK~VVVAAGa~~  698 (720)
                      |.+.+ ++.|++|+++++|++|+.+++++++||++.+..| +.+++.|+ .||+|+..-.
T Consensus       219 l~~~l-~~~g~~i~l~~~V~~I~~~~~~~v~~v~~~~~~~~~~~~~~a~-~VI~a~p~~~  276 (453)
T TIGR02731       219 IVDYI-TSRGGEVRLNSRLKEIVLNEDGSVKHFVLADGEGQRRFEVTAD-AYVSAMPVDI  276 (453)
T ss_pred             HHHHH-HhcCCEEeCCCeeEEEEECCCCCEEEEEEecCCCCceeEEECC-EEEEcCCHHH
Confidence            33444 4679999999999999875367789999876322 22368897 5999998633

Plants and cyanobacteria (and, supposedly, Chlorobium tepidum) have a conserved pathway from two molecules geranylgeranyl-PP to one of all-trans-lycopene. Members of this family are the enzyme pytoene desaturase (also called phytoene dehydrogenase). This model does not include the region of the chloroplast transit peptide in plants. A closely related family, excluded by this model, is zeta-carotene desaturase, another enzyme in the same pathway.

>PRK07608 ubiquinone biosynthesis hydroxylase family protein; Provisional

Probab=98.82  E-value=5.9e-08  Score=105.58  Aligned_cols=36  Identities=31%  Similarity=0.509  Sum_probs=33.4

Q ss_pred             CcccEEEECCcHHHHHHHHHHHhcCCCcEEEEccCCC
Q psy14408        432 DCFDIIIVGASAAGCVLANRLSEVSSLKVLLIEAGGD  468 (720)
Q Consensus       432 ~eyDVVIIGSGiAGLvAA~~LAea~G~KVLVLEKG~~  468 (720)
                      +++||||||||++|+++|+.|++. |++|+||||+..
T Consensus         4 ~~~dv~IvGgG~aGl~~A~~L~~~-G~~v~v~E~~~~   39 (388)
T PRK07608          4 MKFDVVVVGGGLVGASLALALAQS-GLRVALLAPRAP   39 (388)
T ss_pred             ccCCEEEECcCHHHHHHHHHHHhC-CCeEEEEecCCC
Confidence            467999999999999999999999 999999999854

>TIGR02032 GG-red-SF geranylgeranyl reductase family

Probab=98.81  E-value=5.6e-08  Score=100.47  Aligned_cols=34  Identities=41%  Similarity=0.692  Sum_probs=32.1

Q ss_pred             ccEEEECCcHHHHHHHHHHHhcCCCcEEEEccCCC
Q psy14408        434 FDIIIVGASAAGCVLANRLSEVSSLKVLLIEAGGD  468 (720)
Q Consensus       434 yDVVIIGSGiAGLvAA~~LAea~G~KVLVLEKG~~  468 (720)
                      |||||||||++|+++|+.|+++ |++|+||||+..
T Consensus         1 ~dv~IiGaG~aGl~~A~~l~~~-g~~v~vie~~~~   34 (295)
T TIGR02032         1 YDVVVVGAGPAGASAAYRLADK-GLRVLLLEKKSF   34 (295)
T ss_pred             CCEEEECCCHHHHHHHHHHHHC-CCeEEEEeccCC
Confidence            6999999999999999999999 999999999853

This model represents a subfamily which includes geranylgeranyl reductases involved in chlorophyll and bacteriochlorophyll biosynthesis as well as other related enzymes which may also act on geranylgeranyl groups or related substrates.

>PF01134 GIDA: Glucose inhibited division protein A; InterPro: IPR002218 GidA is a tRNA modification enzyme found in bacteria and mitochondria

Probab=98.80  E-value=2.3e-08  Score=110.78  Aligned_cols=56  Identities=23%  Similarity=0.414  Sum_probs=41.7

Q ss_pred             HHHHHHHHHHhcCCCeEEEcCeEEEEEEEccCCcEEEEEEEecCCcEEEEEcCcEEEEccCCc
Q psy14408        635 AADAYLTPIAGKRTNLYVLKRSKVTKVIINDQNVATGVEYVNSKGETVRVTANKEVILTAGAI  697 (720)
Q Consensus       635 aa~a~L~~Aa~e~aGVkIi~gt~VtkIl~e~gGrAtGV~v~dt~G~e~tIkAkK~VVVAAGa~  697 (720)
                      ....++++.+.+..+++|+ +..|++|+.+ +++|.||++.+  |.  .+.|+ .||+|+|.+
T Consensus        96 ~y~~~~~~~l~~~~nl~i~-~~~V~~l~~e-~~~v~GV~~~~--g~--~~~a~-~vVlaTGtf  151 (392)
T PF01134_consen   96 KYSRAMREKLESHPNLTII-QGEVTDLIVE-NGKVKGVVTKD--GE--EIEAD-AVVLATGTF  151 (392)
T ss_dssp             HHHHHHHHHHHTSTTEEEE-ES-EEEEEEC-TTEEEEEEETT--SE--EEEEC-EEEE-TTTG
T ss_pred             HHHHHHHHHHhcCCCeEEE-EcccceEEec-CCeEEEEEeCC--CC--EEecC-EEEEecccc
Confidence            3445666666245789997 5689999999 89999998865  63  78997 699999993

Though its precise molecular function of these proteins is not known, it is involved in the 5-carboxymethylaminomethyl modification of the wobble uridine base in some tRNAs [, ]. Sequence variations in the human mitochondrial protein may influence the severity of aminoglycoside-induced deafness []. This entry is found in GidA and related proteins, such as the methylenetetrahydrofolate--tRNA-(uracil-5-)-methyltransferase enzyme TrmFO.; GO: 0050660 flavin adenine dinucleotide binding, 0008033 tRNA processing; PDB: 3CES_C 3CP2_A 3G05_A 2CUL_A 3CP8_A 2ZXI_B 2ZXH_A 3G5S_A 3G5R_A 3G5Q_A.

>PRK07045 putative monooxygenase; Reviewed

Probab=98.80  E-value=1.5e-07  Score=102.93  Aligned_cols=36  Identities=28%  Similarity=0.419  Sum_probs=33.5

Q ss_pred             CcccEEEECCcHHHHHHHHHHHhcCCCcEEEEccCCC
Q psy14408        432 DCFDIIIVGASAAGCVLANRLSEVSSLKVLLIEAGGD  468 (720)
Q Consensus       432 ~eyDVVIIGSGiAGLvAA~~LAea~G~KVLVLEKG~~  468 (720)
                      .++||+|||||++||++|+.|+++ |++|+|+||...
T Consensus         4 ~~~~V~IiGgGpaGl~~A~~L~~~-G~~v~v~E~~~~   39 (388)
T PRK07045          4 NPVDVLINGSGIAGVALAHLLGAR-GHSVTVVERAAR   39 (388)
T ss_pred             ceeEEEEECCcHHHHHHHHHHHhc-CCcEEEEeCCCc
Confidence            467999999999999999999999 999999999853

>PRK06126 hypothetical protein; Provisional

Probab=98.79  E-value=2.5e-07  Score=106.20  Aligned_cols=36  Identities=25%  Similarity=0.366  Sum_probs=33.3

Q ss_pred             CCcccEEEECCcHHHHHHHHHHHhcCCCcEEEEccCC
Q psy14408        431 GDCFDIIIVGASAAGCVLANRLSEVSSLKVLLIEAGG  467 (720)
Q Consensus       431 d~eyDVVIIGSGiAGLvAA~~LAea~G~KVLVLEKG~  467 (720)
                      ..++||||||||++||++|+.|+++ |++|+||||..
T Consensus         5 ~~~~~VlIVGaGpaGL~~Al~La~~-G~~v~viEr~~   40 (545)
T PRK06126          5 TSETPVLIVGGGPVGLALALDLGRR-GVDSILVERKD   40 (545)
T ss_pred             CccCCEEEECCCHHHHHHHHHHHHC-CCcEEEEeCCC
Confidence            3467999999999999999999999 99999999874

>KOG2415|consensus

Probab=98.79  E-value=1.4e-08  Score=111.19  Aligned_cols=75  Identities=12%  Similarity=0.216  Sum_probs=57.5

Q ss_pred             hhHHHHHHHHHHhcCCCeEEEcCeEEEEEEEccCCcEEEEEEEec----CC-------cEEEEEcCcEEEEccCCcc--h
Q psy14408        633 FSAADAYLTPIAGKRTNLYVLKRSKVTKVIINDQNVATGVEYVNS----KG-------ETVRVTANKEVILTAGAIA--N  699 (720)
Q Consensus       633 ~~aa~a~L~~Aa~e~aGVkIi~gt~VtkIl~e~gGrAtGV~v~dt----~G-------~e~tIkAkK~VVVAAGa~~--S  699 (720)
                      .+..+.||.+.+ ++.|++|..+..+.+|+++++|.|.||.+.|.    +|       +...+.|+ ..|.|-|.-+  +
T Consensus       182 L~~~v~wLg~kA-Ee~GvEiyPg~aaSevly~edgsVkGiaT~D~GI~k~G~pKd~FerGme~hak-~TifAEGc~G~Ls  259 (621)
T KOG2415|consen  182 LGQLVRWLGEKA-EELGVEIYPGFAASEVLYDEDGSVKGIATNDVGISKDGAPKDTFERGMEFHAK-VTIFAEGCHGSLS  259 (621)
T ss_pred             HHHHHHHHHHHH-HhhCceeccccchhheeEcCCCcEeeEeeccccccCCCCccccccccceecce-eEEEeccccchhH
Confidence            455678998888 78999999999999999987899999988864    22       23568886 5888877533  5


Q ss_pred             HHHHHHcCCC
Q psy14408        700 AQLLLLSGIG  709 (720)
Q Consensus       700 p~LLl~SGIg  709 (720)
                      .+++.+-+++
T Consensus       260 kqi~kkf~Lr  269 (621)
T KOG2415|consen  260 KQIIKKFDLR  269 (621)
T ss_pred             HHHHHHhCcc
Confidence            6677766555

>TIGR02023 BchP-ChlP geranylgeranyl reductase

Probab=98.76  E-value=1.1e-07  Score=104.42  Aligned_cols=32  Identities=22%  Similarity=0.618  Sum_probs=31.1

Q ss_pred             ccEEEECCcHHHHHHHHHHHhcCCCcEEEEccC
Q psy14408        434 FDIIIVGASAAGCVLANRLSEVSSLKVLLIEAG  466 (720)
Q Consensus       434 yDVVIIGSGiAGLvAA~~LAea~G~KVLVLEKG  466 (720)
                      |||||||||++|++||+.||+. |++|+||||.
T Consensus         1 yDVvIVGaGpAG~~aA~~La~~-G~~V~l~E~~   32 (388)
T TIGR02023         1 YDVAVIGGGPSGATAAETLARA-GIETILLERA   32 (388)
T ss_pred             CeEEEECCCHHHHHHHHHHHhC-CCcEEEEECC
Confidence            6999999999999999999999 9999999997

This model represents a group of geranylgeranyl reductases specific for the biosyntheses of bacteriochlorophyll and chlorophyll. It is unclear whether the processes of isoprenoid ligation to the chlorin ring and reduction of the geranylgeranyl chain to a phytyl chain are necessarily ordered the same way in all species (see introduction to ).

>PRK09126 hypothetical protein; Provisional

Probab=98.76  E-value=1.5e-07  Score=102.81  Aligned_cols=37  Identities=41%  Similarity=0.414  Sum_probs=34.0

Q ss_pred             CCcccEEEECCcHHHHHHHHHHHhcCCCcEEEEccCCC
Q psy14408        431 GDCFDIIIVGASAAGCVLANRLSEVSSLKVLLIEAGGD  468 (720)
Q Consensus       431 d~eyDVVIIGSGiAGLvAA~~LAea~G~KVLVLEKG~~  468 (720)
                      |+++||||||||++|+++|+.|+++ |++|+|+||...
T Consensus         1 ~~~~dviIvGgG~aGl~~A~~L~~~-G~~v~v~E~~~~   37 (392)
T PRK09126          1 MMHSDIVVVGAGPAGLSFARSLAGS-GLKVTLIERQPL   37 (392)
T ss_pred             CCcccEEEECcCHHHHHHHHHHHhC-CCcEEEEeCCCc
Confidence            3468999999999999999999999 999999999853

>TIGR00275 flavoprotein, HI0933 family

Probab=98.76  E-value=7.1e-08  Score=107.06  Aligned_cols=32  Identities=38%  Similarity=0.499  Sum_probs=29.8

Q ss_pred             EEECCcHHHHHHHHHHHhcCCCcEEEEccCCCC
Q psy14408        437 IIVGASAAGCVLANRLSEVSSLKVLLIEAGGDT  469 (720)
Q Consensus       437 VIIGSGiAGLvAA~~LAea~G~KVLVLEKG~~~  469 (720)
                      ||||||++|++||+.|+++ |++|+||||+...
T Consensus         1 vIIGgG~aGl~aAi~aa~~-G~~V~llEk~~~~   32 (400)
T TIGR00275         1 IIIGGGAAGLMAAITAARE-GLSVLLLEKNKKI   32 (400)
T ss_pred             CEEEEeHHHHHHHHHHHhc-CCcEEEEecCccc
Confidence            6999999999999999999 9999999998644

The model when searched with a partial length search brings in proteins with a dinucleotide-binding motif (Rossman fold) over the initial 40 residues of the model, including oxidoreductases and dehydrogenases. Partially characterized members include an FAD-binding protein from Bacillus cereus and flavoprotein HI0933 from Haemophilus influenzae.

>TIGR01988 Ubi-OHases Ubiquinone biosynthesis hydroxylase, UbiH/UbiF/VisC/COQ6 family

Probab=98.76  E-value=8.6e-08  Score=103.58  Aligned_cols=34  Identities=44%  Similarity=0.579  Sum_probs=31.9

Q ss_pred             cEEEECCcHHHHHHHHHHHhcCCCcEEEEccCCCC
Q psy14408        435 DIIIVGASAAGCVLANRLSEVSSLKVLLIEAGGDT  469 (720)
Q Consensus       435 DVVIIGSGiAGLvAA~~LAea~G~KVLVLEKG~~~  469 (720)
                      ||||||||++|+++|+.|+++ |++|+|+||....
T Consensus         1 dViIvGaG~aGl~~A~~L~~~-G~~v~v~Er~~~~   34 (385)
T TIGR01988         1 DIVIVGGGMVGLALALALARS-GLKIALIEATPAE   34 (385)
T ss_pred             CEEEECCCHHHHHHHHHHhcC-CCEEEEEeCCCcc
Confidence            899999999999999999999 9999999998543

This model represents a family of FAD-dependent hydroxylases (monooxygenases) which are all believed to act in the aerobic ubiquinone biosynthesis pathway. A separate set of hydroxylases, as yet undiscovered, are believed to be active under anaerobic conditions. In E. coli three enzyme activities have been described, UbiB (which acts first at position 6, see TIGR01982), UbiH (which acts at position 4, ) and UbiF (which acts at position 5). UbiH and UbiF are similar to one another and form the basis of this subfamily. Interestingly, E. coli contains another hydroxylase gene, called visC, that is highly similar to UbiF, adjacent to UbiH and, when mutated, results in a phenotype similar to that of UbiH (which has also been named visB). Several other species appear to have three homologs in this family, although they assort themselves differently on phylogenetic trees (e.g. Xylella and Mesorhizobium) maki

>PRK05329 anaerobic glycerol-3-phosphate dehydrogenase subunit B; Validated

Probab=98.75  E-value=7.5e-08  Score=108.01  Aligned_cols=60  Identities=15%  Similarity=0.129  Sum_probs=45.7

Q ss_pred             HHHHHHHhcCCCeEEEcCeEEEEEEEccCCcEEEEEEEecCCcEEEEEcCcEEEEccCCcchHHH
Q psy14408        638 AYLTPIAGKRTNLYVLKRSKVTKVIINDQNVATGVEYVNSKGETVRVTANKEVILTAGAIANAQL  702 (720)
Q Consensus       638 a~L~~Aa~e~aGVkIi~gt~VtkIl~e~gGrAtGV~v~dt~G~e~tIkAkK~VVVAAGa~~Sp~L  702 (720)
                      ..|.+++ ++.|++|+.+++|+++..+ ++++.++...  +|++..++|+ .||||+|.+.+..|
T Consensus       263 ~aL~~~l-~~~Gv~I~~g~~V~~v~~~-~~~V~~v~~~--~g~~~~i~AD-~VVLAtGrf~s~GL  322 (422)
T PRK05329        263 NALRRAF-ERLGGRIMPGDEVLGAEFE-GGRVTAVWTR--NHGDIPLRAR-HFVLATGSFFSGGL  322 (422)
T ss_pred             HHHHHHH-HhCCCEEEeCCEEEEEEEe-CCEEEEEEee--CCceEEEECC-EEEEeCCCcccCce
Confidence            3455555 4789999999999999987 6777776633  3666789998 59999998866654

>PRK07494 2-octaprenyl-6-methoxyphenyl hydroxylase; Provisional

Probab=98.73  E-value=1.8e-07  Score=102.17  Aligned_cols=37  Identities=24%  Similarity=0.341  Sum_probs=34.0

Q ss_pred             CCCcccEEEECCcHHHHHHHHHHHhcCCCcEEEEccCC
Q psy14408        430 SGDCFDIIIVGASAAGCVLANRLSEVSSLKVLLIEAGG  467 (720)
Q Consensus       430 ~d~eyDVVIIGSGiAGLvAA~~LAea~G~KVLVLEKG~  467 (720)
                      .+..+||||||||++|+++|+.|+++ |++|+||||..
T Consensus         4 ~~~~~dViIVGaG~~Gl~~A~~L~~~-G~~v~liE~~~   40 (388)
T PRK07494          4 EKEHTDIAVIGGGPAGLAAAIALARA-GASVALVAPEP   40 (388)
T ss_pred             CCCCCCEEEECcCHHHHHHHHHHhcC-CCeEEEEeCCC
Confidence            45568999999999999999999999 99999999974

>PRK06183 mhpA 3-(3-hydroxyphenyl)propionate hydroxylase; Validated

Probab=98.73  E-value=2.5e-07  Score=106.24  Aligned_cols=37  Identities=35%  Similarity=0.505  Sum_probs=33.9

Q ss_pred             CCcccEEEECCcHHHHHHHHHHHhcCCCcEEEEccCCC
Q psy14408        431 GDCFDIIIVGASAAGCVLANRLSEVSSLKVLLIEAGGD  468 (720)
Q Consensus       431 d~eyDVVIIGSGiAGLvAA~~LAea~G~KVLVLEKG~~  468 (720)
                      +..+||||||||++||++|+.|+++ |++|+||||...
T Consensus         8 ~~~~dV~IVGaGp~Gl~lA~~L~~~-G~~v~v~Er~~~   44 (538)
T PRK06183          8 AHDTDVVIVGAGPVGLTLANLLGQY-GVRVLVLERWPT   44 (538)
T ss_pred             cCCCCEEEECCCHHHHHHHHHHHHC-CCcEEEEecCCC
Confidence            4568999999999999999999999 999999999843

>PRK05714 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Provisional

Probab=98.73  E-value=1.8e-07  Score=103.00  Aligned_cols=34  Identities=41%  Similarity=0.608  Sum_probs=32.2

Q ss_pred             cccEEEECCcHHHHHHHHHHHhcCCCcEEEEccCC
Q psy14408        433 CFDIIIVGASAAGCVLANRLSEVSSLKVLLIEAGG  467 (720)
Q Consensus       433 eyDVVIIGSGiAGLvAA~~LAea~G~KVLVLEKG~  467 (720)
                      ++||||||||++|+++|+.|+++ |++|+||||..
T Consensus         2 ~~dV~IVGaG~aGl~~A~~L~~~-G~~v~viE~~~   35 (405)
T PRK05714          2 RADLLIVGAGMVGSALALALQGS-GLEVLLLDGGP   35 (405)
T ss_pred             CccEEEECccHHHHHHHHHHhcC-CCEEEEEcCCC
Confidence            47999999999999999999999 99999999974

>TIGR03378 glycerol3P_GlpB glycerol-3-phosphate dehydrogenase, anaerobic, B subunit

Probab=98.73  E-value=1.2e-07  Score=106.14  Aligned_cols=62  Identities=16%  Similarity=0.183  Sum_probs=49.0

Q ss_pred             HHHHHhcCCCeEEEcCeEEEEEEEccCCcEEEEEEEecCCcEEEEEcCcEEEEccCCcchHHHHHHc
Q psy14408        640 LTPIAGKRTNLYVLKRSKVTKVIINDQNVATGVEYVNSKGETVRVTANKEVILTAGAIANAQLLLLS  706 (720)
Q Consensus       640 L~~Aa~e~aGVkIi~gt~VtkIl~e~gGrAtGV~v~dt~G~e~tIkAkK~VVVAAGa~~Sp~LLl~S  706 (720)
                      |..++ ++.|++|+.+++|+++..+ ++++++|.+.+  ++...++|++ ||||+|+|.+..|+...
T Consensus       269 L~~~~-~~~Gg~il~g~~V~~i~~~-~~~v~~V~t~~--g~~~~l~AD~-vVLAaGaw~S~gL~a~l  330 (419)
T TIGR03378       269 LKHRF-EQLGGVMLPGDRVLRAEFE-GNRVTRIHTRN--HRDIPLRADH-FVLASGSFFSNGLVAEF  330 (419)
T ss_pred             HHHHH-HHCCCEEEECcEEEEEEee-CCeEEEEEecC--CccceEECCE-EEEccCCCcCHHHHhhc
Confidence            44444 4889999999999999998 88888877644  4345799984 99999997688887664

Members of this protein family are the B subunit, product of the glpB gene, of a three-subunit, membrane-anchored, FAD-dependent anaerobic glycerol-3-phosphate dehydrogenase.

>KOG2404|consensus

Probab=98.72  E-value=5.2e-08  Score=104.05  Aligned_cols=49  Identities=29%  Similarity=0.559  Sum_probs=44.3

Q ss_pred             CeEEEcCeEEEEEEEccCCcEEEEEEEecCCcEEEEEcCcEEEEccCCcch
Q psy14408        649 NLYVLKRSKVTKVIINDQNVATGVEYVNSKGETVRVTANKEVILTAGAIAN  699 (720)
Q Consensus       649 GVkIi~gt~VtkIl~e~gGrAtGV~v~dt~G~e~tIkAkK~VVVAAGa~~S  699 (720)
                      -++|+.+++|++|+.+ +|+|.||++.|..|++..+.++ .||+|+|++.-
T Consensus       159 ~~ki~~nskvv~il~n-~gkVsgVeymd~sgek~~~~~~-~VVlatGGf~y  207 (477)
T KOG2404|consen  159 LVKILLNSKVVDILRN-NGKVSGVEYMDASGEKSKIIGD-AVVLATGGFGY  207 (477)
T ss_pred             HHhhhhcceeeeeecC-CCeEEEEEEEcCCCCccceecC-ceEEecCCcCc
Confidence            4899999999999977 9999999999988887788887 59999999986

>TIGR02028 ChlP geranylgeranyl reductase

Probab=98.72  E-value=2.1e-07  Score=103.14  Aligned_cols=32  Identities=25%  Similarity=0.516  Sum_probs=30.9

Q ss_pred             ccEEEECCcHHHHHHHHHHHhcCCCcEEEEccC
Q psy14408        434 FDIIIVGASAAGCVLANRLSEVSSLKVLLIEAG  466 (720)
Q Consensus       434 yDVVIIGSGiAGLvAA~~LAea~G~KVLVLEKG  466 (720)
                      +||||||||++|++||+.||++ |++|+||||.
T Consensus         1 ~~VvIVGaGPAG~~aA~~la~~-G~~V~llE~~   32 (398)
T TIGR02028         1 LRVAVVGGGPAGASAAETLASA-GIQTFLLERK   32 (398)
T ss_pred             CeEEEECCcHHHHHHHHHHHhC-CCcEEEEecC
Confidence            5999999999999999999999 9999999997

This model represents the reductase which acts reduces the geranylgeranyl group to the phytyl group in the side chain of chlorophyll. It is unclear whether the enzyme has a preference for acting before or after the attachment of the side chain to chlorophyllide a by chlorophyll synthase. This clade is restricted to plants and cyanobacteria to separate it from the homologues which act in the biosynthesis of bacteriochlorophyll.

>PLN00093 geranylgeranyl diphosphate reductase; Provisional

Probab=98.71  E-value=2.2e-07  Score=105.05  Aligned_cols=36  Identities=28%  Similarity=0.505  Sum_probs=33.5

Q ss_pred             CCCcccEEEECCcHHHHHHHHHHHhcCCCcEEEEccC
Q psy14408        430 SGDCFDIIIVGASAAGCVLANRLSEVSSLKVLLIEAG  466 (720)
Q Consensus       430 ~d~eyDVVIIGSGiAGLvAA~~LAea~G~KVLVLEKG  466 (720)
                      ...++||||||||++|++||+.||++ |++|+||||.
T Consensus        36 ~~~~~DViIVGaGPAG~~aA~~LA~~-G~~VlllEr~   71 (450)
T PLN00093         36 SGRKLRVAVIGGGPAGACAAETLAKG-GIETFLIERK   71 (450)
T ss_pred             CCCCCeEEEECCCHHHHHHHHHHHhC-CCcEEEEecC
Confidence            34568999999999999999999999 9999999997

>TIGR01350 lipoamide_DH dihydrolipoamide dehydrogenase

Probab=98.71  E-value=6.6e-07  Score=100.35  Aligned_cols=33  Identities=33%  Similarity=0.670  Sum_probs=31.4

Q ss_pred             cccEEEECCcHHHHHHHHHHHhcCCCcEEEEccC
Q psy14408        433 CFDIIIVGASAAGCVLANRLSEVSSLKVLLIEAG  466 (720)
Q Consensus       433 eyDVVIIGSGiAGLvAA~~LAea~G~KVLVLEKG  466 (720)
                      +|||||||||++|+.||++|++. |++|+||||+
T Consensus         1 ~yDvvVIG~G~aGl~aA~~la~~-G~~v~lie~~   33 (461)
T TIGR01350         1 AYDVVVIGGGPGGYVAAIRAAQL-GLKVALVEKE   33 (461)
T ss_pred             CccEEEECCCHHHHHHHHHHHhC-CCeEEEEecC
Confidence            48999999999999999999999 9999999993

The motif GGXCXXXGCXP near the N-terminus contains a redox-active disulfide.

>COG0654 UbiH 2-polyprenyl-6-methoxyphenol hydroxylase and related FAD-dependent oxidoreductases [Coenzyme metabolism / Energy production and conversion]

Probab=98.71  E-value=1.9e-07  Score=102.71  Aligned_cols=33  Identities=42%  Similarity=0.591  Sum_probs=31.7

Q ss_pred             cccEEEECCcHHHHHHHHHHHhcCCCcEEEEccC
Q psy14408        433 CFDIIIVGASAAGCVLANRLSEVSSLKVLLIEAG  466 (720)
Q Consensus       433 eyDVVIIGSGiAGLvAA~~LAea~G~KVLVLEKG  466 (720)
                      .+||||||||++||++|+.|+++ |++|+||||.
T Consensus         2 ~~dV~IvGaG~aGl~lA~~L~~~-G~~V~l~E~~   34 (387)
T COG0654           2 MLDVAIVGAGPAGLALALALARA-GLDVTLLERA   34 (387)
T ss_pred             CCCEEEECCCHHHHHHHHHHHhC-CCcEEEEccC
Confidence            46999999999999999999999 9999999997

>PRK06847 hypothetical protein; Provisional

Probab=98.70  E-value=3.1e-07  Score=99.53  Aligned_cols=34  Identities=26%  Similarity=0.340  Sum_probs=31.9

Q ss_pred             cccEEEECCcHHHHHHHHHHHhcCCCcEEEEccCC
Q psy14408        433 CFDIIIVGASAAGCVLANRLSEVSSLKVLLIEAGG  467 (720)
Q Consensus       433 eyDVVIIGSGiAGLvAA~~LAea~G~KVLVLEKG~  467 (720)
                      ..||||||||++||++|+.|++. |++|+|+||..
T Consensus         4 ~~~V~IVGaG~aGl~~A~~L~~~-g~~v~v~E~~~   37 (375)
T PRK06847          4 VKKVLIVGGGIGGLSAAIALRRA-GIAVDLVEIDP   37 (375)
T ss_pred             cceEEEECCCHHHHHHHHHHHhC-CCCEEEEecCC
Confidence            35999999999999999999999 99999999974

>PRK08243 4-hydroxybenzoate 3-monooxygenase; Validated

Probab=98.70  E-value=9.1e-08  Score=105.17  Aligned_cols=34  Identities=24%  Similarity=0.398  Sum_probs=32.3

Q ss_pred             cccEEEECCcHHHHHHHHHHHhcCCCcEEEEccCC
Q psy14408        433 CFDIIIVGASAAGCVLANRLSEVSSLKVLLIEAGG  467 (720)
Q Consensus       433 eyDVVIIGSGiAGLvAA~~LAea~G~KVLVLEKG~  467 (720)
                      .+||||||||++||++|+.|+++ |++|+||||..
T Consensus         2 ~~dV~IvGaGpaGl~~A~~L~~~-G~~v~v~E~~~   35 (392)
T PRK08243          2 RTQVAIIGAGPAGLLLGQLLHLA-GIDSVVLERRS   35 (392)
T ss_pred             cceEEEECCCHHHHHHHHHHHhc-CCCEEEEEcCC
Confidence            46999999999999999999999 99999999985

>TIGR02352 thiamin_ThiO glycine oxidase ThiO

Probab=98.70  E-value=1.8e-07  Score=99.04  Aligned_cols=116  Identities=17%  Similarity=0.147  Sum_probs=67.0

Q ss_pred             CcCCcccccccccccchHHHHHHHHHHHHcCCCCCC----------CCCCccccccccccCCccccCcchhHHHHHHHHH
Q psy14408        574 GTQGYLPVGLFKNKENNIIREIFETSAQELGYPCPK----------DMNDRYVDVGFAELPGMTRYGLRFSAADAYLTPI  643 (720)
Q Consensus       574 ~~~G~L~va~~~~~~~~~~~q~llea~rklG~~~~~----------d~ng~~~~~G~~~~~~g~~~G~k~~aa~a~L~~A  643 (720)
                      ...|.+.+......  ....+...+..++.|+....          +..... ..+..+...+..... ......+++.+
T Consensus        72 ~~~G~l~~a~~~~~--~~~l~~~~~~~~~~~~~~~~l~~~e~~~~~p~l~~~-~~~g~~~~~~g~v~p-~~l~~~l~~~~  147 (337)
T TIGR02352        72 HQCGTLVVAFDEDD--VEHLRQLADLQSATGMEVEWLSGRALRRLEPYLSGG-IRGAVFYPDDAHVDP-RALLKALEKAL  147 (337)
T ss_pred             EEccEEEEeCCHHH--HHHHHHHHHHHHhcCCceEEcCHHHHHHhCCCCCcc-cceEEEcCCCceECh-HHHHHHHHHHH
Confidence            34566666555444  44555666666666654330          011111 223332222111111 12222444444


Q ss_pred             HhcCCCeEEEcCeEEEEEEEccCCcEEEEEEEecCCcEEEEEcCcEEEEccCCcchHHHH
Q psy14408        644 AGKRTNLYVLKRSKVTKVIINDQNVATGVEYVNSKGETVRVTANKEVILTAGAIANAQLL  703 (720)
Q Consensus       644 a~e~aGVkIi~gt~VtkIl~e~gGrAtGV~v~dt~G~e~tIkAkK~VVVAAGa~~Sp~LL  703 (720)
                      .  +.|++|+++++|++|..+ ++++.+|.+.+  |   +++|+ .||+|+|+ |+..|+
T Consensus       148 ~--~~g~~~~~~~~v~~i~~~-~~~~~~v~~~~--g---~~~a~-~vV~a~G~-~~~~l~  197 (337)
T TIGR02352       148 E--KLGVEIIEHTEVQHIEIR-GEKVTAIVTPS--G---DVQAD-QVVLAAGA-WAGELL  197 (337)
T ss_pred             H--HcCCEEEccceEEEEEee-CCEEEEEEcCC--C---EEECC-EEEEcCCh-hhhhcc
Confidence            4  789999999999999987 77788876533  4   68998 59999997 666654

This family consists of the homotetrameric, FAD-dependent glycine oxidase ThiO, from species such as Bacillus subtilis that use glycine in thiamine biosynthesis. In general, members of this family will not be found in species such as E. coli that instead use tyrosine and the ThiH protein.

>TIGR02732 zeta_caro_desat carotene 7,8-desaturase

Probab=98.69  E-value=3.2e-07  Score=104.13  Aligned_cols=57  Identities=16%  Similarity=0.165  Sum_probs=41.8

Q ss_pred             cCCCeEEEcCeEEEEEEEcc--CC--cEEEEEEEecCCcEEEEEcCcEEEEccCCcchHHHHH
Q psy14408        646 KRTNLYVLKRSKVTKVIIND--QN--VATGVEYVNSKGETVRVTANKEVILTAGAIANAQLLL  704 (720)
Q Consensus       646 e~aGVkIi~gt~VtkIl~e~--gG--rAtGV~v~dt~G~e~tIkAkK~VVVAAGa~~Sp~LLl  704 (720)
                      ++.|++|+.+++|++|+.++  ++  +++||++.+..| ..++.|+ .||+|+.......||-
T Consensus       230 ~~~Gg~i~~~~~V~~I~~~~~~~~~~~v~~v~~~~g~~-~~~~~aD-~VVlA~p~~~~~~Ll~  290 (474)
T TIGR02732       230 EARGGKFHLRHKVREIKYEKSSDGSTRVTGLIMSKPEG-KKVIKAD-AYVAACDVPGIKRLLP  290 (474)
T ss_pred             HHCCCEEECCCEEEEEEEecCCCCceeEEEEEEecCCc-ceEEECC-EEEECCChHHHHhhCC
Confidence            36899999999999999862  12  378888754222 1358898 5999999876666653

Carotene 7,8-desaturase, also called zeta-carotene desaturase, catalyzes multiple steps in the pathway from geranylgeranyl-PP to all-trans-lycopene in plants and cyanobacteria. A similar enzyme and pathway is found in the green sulfur bacterium Chlorobium tepidum.

>PRK06834 hypothetical protein; Provisional

Probab=98.68  E-value=3.4e-07  Score=104.33  Aligned_cols=35  Identities=23%  Similarity=0.409  Sum_probs=32.9

Q ss_pred             CcccEEEECCcHHHHHHHHHHHhcCCCcEEEEccCC
Q psy14408        432 DCFDIIIVGASAAGCVLANRLSEVSSLKVLLIEAGG  467 (720)
Q Consensus       432 ~eyDVVIIGSGiAGLvAA~~LAea~G~KVLVLEKG~  467 (720)
                      .++||||||||++|+++|+.|+++ |++|+||||..
T Consensus         2 ~~~dVlIVGaGp~Gl~lA~~La~~-G~~v~vlEr~~   36 (488)
T PRK06834          2 TEHAVVIAGGGPTGLMLAGELALA-GVDVAIVERRP   36 (488)
T ss_pred             CcceEEEECCCHHHHHHHHHHHHC-CCcEEEEecCC
Confidence            458999999999999999999999 99999999974

>PRK07588 hypothetical protein; Provisional

Probab=98.68  E-value=2.1e-07  Score=101.91  Aligned_cols=32  Identities=34%  Similarity=0.348  Sum_probs=30.8

Q ss_pred             cEEEECCcHHHHHHHHHHHhcCCCcEEEEccCC
Q psy14408        435 DIIIVGASAAGCVLANRLSEVSSLKVLLIEAGG  467 (720)
Q Consensus       435 DVVIIGSGiAGLvAA~~LAea~G~KVLVLEKG~  467 (720)
                      ||||||||++||++|+.|+++ |++|+|+||..
T Consensus         2 ~V~IVGgG~aGl~~A~~L~~~-G~~v~v~E~~~   33 (391)
T PRK07588          2 KVAISGAGIAGPTLAYWLRRY-GHEPTLIERAP   33 (391)
T ss_pred             eEEEECccHHHHHHHHHHHHC-CCceEEEeCCC
Confidence            899999999999999999999 99999999984

>PRK08013 oxidoreductase; Provisional

Probab=98.68  E-value=1.3e-07  Score=104.27  Aligned_cols=36  Identities=25%  Similarity=0.411  Sum_probs=33.4

Q ss_pred             CcccEEEECCcHHHHHHHHHHHhcCCCcEEEEccCCC
Q psy14408        432 DCFDIIIVGASAAGCVLANRLSEVSSLKVLLIEAGGD  468 (720)
Q Consensus       432 ~eyDVVIIGSGiAGLvAA~~LAea~G~KVLVLEKG~~  468 (720)
                      .++||||||||++|+++|+.|+++ |++|+||||...
T Consensus         2 ~~~dV~IvGaGpaGl~~A~~La~~-G~~v~viE~~~~   37 (400)
T PRK08013          2 QSVDVVIAGGGMVGLAVACGLQGS-GLRVAVLEQRVP   37 (400)
T ss_pred             CcCCEEEECcCHHHHHHHHHHhhC-CCEEEEEeCCCC
Confidence            458999999999999999999999 999999999853

>COG0492 TrxB Thioredoxin reductase [Posttranslational modification, protein turnover, chaperones]

Probab=98.68  E-value=7.1e-08  Score=103.91  Aligned_cols=64  Identities=25%  Similarity=0.418  Sum_probs=50.4

Q ss_pred             HHHHHhcCCCeEEEcCeEEEEEEEccCCcEEEEEEEecCCcEEEEEcCcEEEEccCCcchHHHHHHcCC
Q psy14408        640 LTPIAGKRTNLYVLKRSKVTKVIINDQNVATGVEYVNSKGETVRVTANKEVILTAGAIANAQLLLLSGI  708 (720)
Q Consensus       640 L~~Aa~e~aGVkIi~gt~VtkIl~e~gGrAtGV~v~dt~G~e~tIkAkK~VVVAAGa~~Sp~LLl~SGI  708 (720)
                      +..+. +..++++++++.|++|.-+ +  +.+|++++..|+...+..+ .|+++.|......++...|+
T Consensus       185 ~~~l~-~~~~i~~~~~~~i~ei~G~-~--v~~v~l~~~~~~~~~~~~~-gvf~~iG~~p~~~~~~~~~~  248 (305)
T COG0492         185 VERLK-KNVKIEVLTNTVVKEILGD-D--VEGVVLKNVKGEEKELPVD-GVFIAIGHLPNTELLKGLGV  248 (305)
T ss_pred             HHHHH-hcCCeEEEeCCceeEEecC-c--cceEEEEecCCceEEEEec-eEEEecCCCCchHHHhhccc
Confidence            33443 3348999999999999876 3  8899998855667788887 59999999888888887665

>PRK08020 ubiF 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Reviewed

Probab=98.67  E-value=2.4e-07  Score=101.15  Aligned_cols=36  Identities=31%  Similarity=0.424  Sum_probs=33.3

Q ss_pred             CCcccEEEECCcHHHHHHHHHHHhcCCCcEEEEccCC
Q psy14408        431 GDCFDIIIVGASAAGCVLANRLSEVSSLKVLLIEAGG  467 (720)
Q Consensus       431 d~eyDVVIIGSGiAGLvAA~~LAea~G~KVLVLEKG~  467 (720)
                      ..++||||||||++|+++|+.|+++ |++|+|||+..
T Consensus         3 ~~~~dViIvGgG~aGl~~A~~La~~-G~~V~liE~~~   38 (391)
T PRK08020          3 NQPTDIAIVGGGMVGAALALGLAQH-GFSVAVLEHAA   38 (391)
T ss_pred             cccccEEEECcCHHHHHHHHHHhcC-CCEEEEEcCCC
Confidence            3468999999999999999999999 99999999974

>PRK06617 2-octaprenyl-6-methoxyphenyl hydroxylase; Validated

Probab=98.67  E-value=2.6e-07  Score=101.05  Aligned_cols=33  Identities=18%  Similarity=0.370  Sum_probs=31.5

Q ss_pred             ccEEEECCcHHHHHHHHHHHhcCCCcEEEEccCC
Q psy14408        434 FDIIIVGASAAGCVLANRLSEVSSLKVLLIEAGG  467 (720)
Q Consensus       434 yDVVIIGSGiAGLvAA~~LAea~G~KVLVLEKG~  467 (720)
                      +||||||||++|+++|+.|++. |++|+|+|+..
T Consensus         2 ~dV~IvGgG~~Gl~~A~~L~~~-G~~v~l~E~~~   34 (374)
T PRK06617          2 SNTVILGCGLSGMLTALSFAQK-GIKTTIFESKS   34 (374)
T ss_pred             ccEEEECCCHHHHHHHHHHHcC-CCeEEEecCCC
Confidence            6999999999999999999999 99999999974

>PLN02612 phytoene desaturase

Probab=98.66  E-value=5.9e-07  Score=104.30  Aligned_cols=39  Identities=28%  Similarity=0.320  Sum_probs=34.9

Q ss_pred             cccEEEECCcHHHHHHHHHHHhcCCCcEEEEccCCCCCCC
Q psy14408        433 CFDIIIVGASAAGCVLANRLSEVSSLKVLLIEAGGDTPIH  472 (720)
Q Consensus       433 eyDVVIIGSGiAGLvAA~~LAea~G~KVLVLEKG~~~~~s  472 (720)
                      ..||+|||||++||+||++|+++ |++|+|+|+....++.
T Consensus        93 ~~~v~iiG~G~~Gl~~a~~l~~~-g~~~~~~e~~~~~gG~  131 (567)
T PLN02612         93 PLKVVIAGAGLAGLSTAKYLADA-GHKPILLEARDVLGGK  131 (567)
T ss_pred             CCCEEEECCCHHHHHHHHHHHhc-CCeEEEEecCCCCCCc
Confidence            46999999999999999999999 9999999998766443

>PRK07538 hypothetical protein; Provisional

Probab=98.65  E-value=2.4e-07  Score=102.57  Aligned_cols=32  Identities=28%  Similarity=0.488  Sum_probs=30.9

Q ss_pred             cEEEECCcHHHHHHHHHHHhcCCCcEEEEccCC
Q psy14408        435 DIIIVGASAAGCVLANRLSEVSSLKVLLIEAGG  467 (720)
Q Consensus       435 DVVIIGSGiAGLvAA~~LAea~G~KVLVLEKG~  467 (720)
                      ||||||||++||++|+.|+++ |++|+|+||..
T Consensus         2 dV~IVGaG~aGl~~A~~L~~~-G~~v~v~E~~~   33 (413)
T PRK07538          2 KVLIAGGGIGGLTLALTLHQR-GIEVVVFEAAP   33 (413)
T ss_pred             eEEEECCCHHHHHHHHHHHhC-CCcEEEEEcCC
Confidence            899999999999999999999 99999999974

>TIGR01984 UbiH 2-polyprenyl-6-methoxyphenol 4-hydroxylase

Probab=98.65  E-value=3.7e-07  Score=99.20  Aligned_cols=33  Identities=45%  Similarity=0.640  Sum_probs=31.4

Q ss_pred             cEEEECCcHHHHHHHHHHHhcCC-CcEEEEccCCC
Q psy14408        435 DIIIVGASAAGCVLANRLSEVSS-LKVLLIEAGGD  468 (720)
Q Consensus       435 DVVIIGSGiAGLvAA~~LAea~G-~KVLVLEKG~~  468 (720)
                      ||||||||++|+++|+.|+++ | ++|+|+||...
T Consensus         1 dv~IvGaG~aGl~~A~~L~~~-G~~~v~v~E~~~~   34 (382)
T TIGR01984         1 DVIIVGGGLVGLSLALALSRL-GKIKIALIEANSP   34 (382)
T ss_pred             CEEEECccHHHHHHHHHHhcC-CCceEEEEeCCCc
Confidence            899999999999999999999 9 99999999854

This model represents the FAD-dependent monoxygenase responsible for the second hydroxylation step in the aerobic ubiquinone bioynthetic pathway. The scope of this model is limited to the proteobacteria. This family is closely related to the UbiF hydroxylase which catalyzes the final hydroxylation step. The enzyme has also been named VisB due to a mutant VISible light sensitive phenotype.

>PRK05868 hypothetical protein; Validated

Probab=98.64  E-value=4.6e-07  Score=99.39  Aligned_cols=33  Identities=27%  Similarity=0.383  Sum_probs=31.3

Q ss_pred             cEEEECCcHHHHHHHHHHHhcCCCcEEEEccCCC
Q psy14408        435 DIIIVGASAAGCVLANRLSEVSSLKVLLIEAGGD  468 (720)
Q Consensus       435 DVVIIGSGiAGLvAA~~LAea~G~KVLVLEKG~~  468 (720)
                      ||+|||||++||++|+.|+++ |++|+|+||...
T Consensus         3 ~V~IvGgG~aGl~~A~~L~~~-G~~v~viE~~~~   35 (372)
T PRK05868          3 TVVVSGASVAGTAAAYWLGRH-GYSVTMVERHPG   35 (372)
T ss_pred             eEEEECCCHHHHHHHHHHHhC-CCCEEEEcCCCC
Confidence            899999999999999999999 999999999843

>PRK08163 salicylate hydroxylase; Provisional

Probab=98.63  E-value=4.3e-07  Score=99.28  Aligned_cols=34  Identities=29%  Similarity=0.426  Sum_probs=32.2

Q ss_pred             cccEEEECCcHHHHHHHHHHHhcCCCcEEEEccCC
Q psy14408        433 CFDIIIVGASAAGCVLANRLSEVSSLKVLLIEAGG  467 (720)
Q Consensus       433 eyDVVIIGSGiAGLvAA~~LAea~G~KVLVLEKG~  467 (720)
                      ..||||||||++||++|+.|+++ |++|+|+||..
T Consensus         4 ~~~V~IvGaGiaGl~~A~~L~~~-g~~v~v~Er~~   37 (396)
T PRK08163          4 VTPVLIVGGGIGGLAAALALARQ-GIKVKLLEQAA   37 (396)
T ss_pred             CCeEEEECCcHHHHHHHHHHHhC-CCcEEEEeeCc
Confidence            46999999999999999999999 99999999984

>PRK07190 hypothetical protein; Provisional

Probab=98.63  E-value=5.3e-07  Score=102.83  Aligned_cols=36  Identities=19%  Similarity=0.365  Sum_probs=33.1

Q ss_pred             CcccEEEECCcHHHHHHHHHHHhcCCCcEEEEccCCC
Q psy14408        432 DCFDIIIVGASAAGCVLANRLSEVSSLKVLLIEAGGD  468 (720)
Q Consensus       432 ~eyDVVIIGSGiAGLvAA~~LAea~G~KVLVLEKG~~  468 (720)
                      ..+||||||||++||++|+.|+++ |++|+||||...
T Consensus         4 ~~~dVlIVGAGPaGL~lA~~Lar~-Gi~V~llEr~~~   39 (487)
T PRK07190          4 QVTDVVIIGAGPVGLMCAYLGQLC-GLNTVIVDKSDG   39 (487)
T ss_pred             ccceEEEECCCHHHHHHHHHHHHc-CCCEEEEeCCCc
Confidence            357999999999999999999999 999999999853

>PF13738 Pyr_redox_3: Pyridine nucleotide-disulphide oxidoreductase; PDB: 3D1C_A 4A9W_B 2YLX_A 2YM2_A 2YLW_A 2YLR_A 2YM1_A 2YLS_A 1W4X_A 2YLT_A

Probab=98.62  E-value=7.3e-08  Score=95.20  Aligned_cols=62  Identities=23%  Similarity=0.318  Sum_probs=38.7

Q ss_pred             HHHHHHHhcCCCeEEEcCeEEEEEEEccCCcEEEEEEEecCCcEEEEEcCcEEEEccCCcchHHHHHHcC
Q psy14408        638 AYLTPIAGKRTNLYVLKRSKVTKVIINDQNVATGVEYVNSKGETVRVTANKEVILTAGAIANAQLLLLSG  707 (720)
Q Consensus       638 a~L~~Aa~e~aGVkIi~gt~VtkIl~e~gGrAtGV~v~dt~G~e~tIkAkK~VVVAAGa~~Sp~LLl~SG  707 (720)
                      .+|...+ ++.|++++.+++|++|..+ +++ .-|++.+  |  .+++|+ .||+|+|.+..+.++.--|
T Consensus        86 ~yl~~~~-~~~~l~i~~~~~V~~v~~~-~~~-w~v~~~~--~--~~~~a~-~VVlAtG~~~~p~~p~~~g  147 (203)
T PF13738_consen   86 DYLQEYA-ERFGLEIRFNTRVESVRRD-GDG-WTVTTRD--G--RTIRAD-RVVLATGHYSHPRIPDIPG  147 (203)
T ss_dssp             HHHHHHH-HHTTGGEETS--EEEEEEE-TTT-EEEEETT--S---EEEEE-EEEE---SSCSB---S-TT
T ss_pred             HHHHHHH-hhcCcccccCCEEEEEEEe-ccE-EEEEEEe--c--ceeeee-eEEEeeeccCCCCcccccc
Confidence            5677776 6778899999999999998 555 4455443  5  478897 5999999887887765444

...

>PLN02697 lycopene epsilon cyclase

Probab=98.61  E-value=3.3e-07  Score=105.56  Aligned_cols=35  Identities=29%  Similarity=0.517  Sum_probs=32.6

Q ss_pred             CCcccEEEECCcHHHHHHHHHHHhcCCCcEEEEccC
Q psy14408        431 GDCFDIIIVGASAAGCVLANRLSEVSSLKVLLIEAG  466 (720)
Q Consensus       431 d~eyDVVIIGSGiAGLvAA~~LAea~G~KVLVLEKG  466 (720)
                      +..+||||||||++|+++|..|+++ |++|+|||++
T Consensus       106 ~~~~DVvIVGaGPAGLalA~~Lak~-Gl~V~LIe~~  140 (529)
T PLN02697        106 DGTLDLVVIGCGPAGLALAAESAKL-GLNVGLIGPD  140 (529)
T ss_pred             cCcccEEEECcCHHHHHHHHHHHhC-CCcEEEecCc
Confidence            4568999999999999999999999 9999999985

>PRK06416 dihydrolipoamide dehydrogenase; Reviewed

Probab=98.61  E-value=1.6e-06  Score=97.56  Aligned_cols=35  Identities=34%  Similarity=0.561  Sum_probs=33.0

Q ss_pred             CcccEEEECCcHHHHHHHHHHHhcCCCcEEEEccCC
Q psy14408        432 DCFDIIIVGASAAGCVLANRLSEVSSLKVLLIEAGG  467 (720)
Q Consensus       432 ~eyDVVIIGSGiAGLvAA~~LAea~G~KVLVLEKG~  467 (720)
                      .+|||||||||.+|+.||..|+++ |++|+|+||+.
T Consensus         3 ~~yDvvVIGaGpaG~~aA~~aa~~-G~~V~liE~~~   37 (462)
T PRK06416          3 FEYDVIVIGAGPGGYVAAIRAAQL-GLKVAIVEKEK   37 (462)
T ss_pred             ccccEEEECCCHHHHHHHHHHHHC-CCcEEEEeccc
Confidence            368999999999999999999999 99999999975

>COG3380 Predicted NAD/FAD-dependent oxidoreductase [General function prediction only]

Probab=98.61  E-value=1.2e-07  Score=99.59  Aligned_cols=35  Identities=37%  Similarity=0.435  Sum_probs=32.4

Q ss_pred             cEEEECCcHHHHHHHHHHHhcCCCcEEEEccCCCCC
Q psy14408        435 DIIIVGASAAGCVLANRLSEVSSLKVLLIEAGGDTP  470 (720)
Q Consensus       435 DVVIIGSGiAGLvAA~~LAea~G~KVLVLEKG~~~~  470 (720)
                      +|+|||+|++|++||..|+++ |+.|+|+|||.-.+
T Consensus         3 siaIVGaGiAGl~aA~~L~~a-G~~vtV~eKg~GvG   37 (331)
T COG3380           3 SIAIVGAGIAGLAAAYALREA-GREVTVFEKGRGVG   37 (331)
T ss_pred             cEEEEccchHHHHHHHHHHhc-CcEEEEEEcCCCcc
Confidence            799999999999999999999 99999999996443

>PRK05732 2-octaprenyl-6-methoxyphenyl hydroxylase; Validated

Probab=98.61  E-value=6.9e-07  Score=97.36  Aligned_cols=36  Identities=47%  Similarity=0.540  Sum_probs=32.1

Q ss_pred             CCcccEEEECCcHHHHHHHHHHHhc--CCCcEEEEccC
Q psy14408        431 GDCFDIIIVGASAAGCVLANRLSEV--SSLKVLLIEAG  466 (720)
Q Consensus       431 d~eyDVVIIGSGiAGLvAA~~LAea--~G~KVLVLEKG  466 (720)
                      |..+||||||||++|+++|+.|+++  .|++|+||||.
T Consensus         1 m~~~dv~IvGaG~aGl~~A~~L~~~~~~G~~v~v~E~~   38 (395)
T PRK05732          1 MSRMDVIIVGGGMAGATLALALSRLSHGGLPVALIEAF   38 (395)
T ss_pred             CCcCCEEEECcCHHHHHHHHHhhhcccCCCEEEEEeCC
Confidence            3568999999999999999999874  39999999996

>PRK08850 2-octaprenyl-6-methoxyphenol hydroxylase; Validated

Probab=98.59  E-value=5.9e-07  Score=99.11  Aligned_cols=34  Identities=32%  Similarity=0.564  Sum_probs=32.1

Q ss_pred             CcccEEEECCcHHHHHHHHHHHhcCCCcEEEEccC
Q psy14408        432 DCFDIIIVGASAAGCVLANRLSEVSSLKVLLIEAG  466 (720)
Q Consensus       432 ~eyDVVIIGSGiAGLvAA~~LAea~G~KVLVLEKG  466 (720)
                      ..+||||||||++|+++|+.|+++ |++|+||||.
T Consensus         3 ~~~dV~IvGaG~~Gl~~A~~L~~~-G~~v~viE~~   36 (405)
T PRK08850          3 QSVDVAIIGGGMVGLALAAALKES-DLRIAVIEGQ   36 (405)
T ss_pred             CcCCEEEECccHHHHHHHHHHHhC-CCEEEEEcCC
Confidence            357999999999999999999999 9999999996

>KOG2852|consensus

Probab=98.59  E-value=3.4e-08  Score=104.26  Aligned_cols=65  Identities=17%  Similarity=0.274  Sum_probs=45.9

Q ss_pred             HHHHHHHhcCCCeEEEcCeEEEEEEEccCCcEEEEEEEecCCcEEEEEcCcEEEEccCCcchHHHHHHcC
Q psy14408        638 AYLTPIAGKRTNLYVLKRSKVTKVIINDQNVATGVEYVNSKGETVRVTANKEVILTAGAIANAQLLLLSG  707 (720)
Q Consensus       638 a~L~~Aa~e~aGVkIi~gt~VtkIl~e~gGrAtGV~v~dt~G~e~tIkAkK~VVVAAGa~~Sp~LLl~SG  707 (720)
                      .++..|. ++.||+++.+ .|.+|..+ .+|+.+|-.....+..+...+. +||||+|. |+..||...+
T Consensus       152 ~i~sea~-k~~~V~lv~G-kv~ev~dE-k~r~n~v~~ae~~~ti~~~d~~-~ivvsaGP-WTskllp~~r  216 (380)
T KOG2852|consen  152 FILSEAE-KRGGVKLVFG-KVKEVSDE-KHRINSVPKAEAEDTIIKADVH-KIVVSAGP-WTSKLLPFTR  216 (380)
T ss_pred             HHHHHHH-hhcCeEEEEe-eeEEeecc-cccccccchhhhcCceEEeeee-EEEEecCC-Cchhhccccc
Confidence            4566676 6778999988 58888755 7788877665322323466776 59999998 7778876643

>PLN02172 flavin-containing monooxygenase FMO GS-OX

Probab=98.58  E-value=2.9e-07  Score=104.40  Aligned_cols=69  Identities=22%  Similarity=0.226  Sum_probs=46.0

Q ss_pred             HHHHHHHHHhcCCCeE--EEcCeEEEEEEEccCCcEEEEEEEecCCcEEEEEcCcEEEEccCCcchHHHHHHcCC
Q psy14408        636 ADAYLTPIAGKRTNLY--VLKRSKVTKVIINDQNVATGVEYVNSKGETVRVTANKEVILTAGAIANAQLLLLSGI  708 (720)
Q Consensus       636 a~a~L~~Aa~e~aGVk--Ii~gt~VtkIl~e~gGrAtGV~v~dt~G~e~tIkAkK~VVVAAGa~~Sp~LLl~SGI  708 (720)
                      ...||...+ ++.|+.  |+++++|++|..+ +++ .-|++.+..+...+..++ .||||+|.+..|.+..--|+
T Consensus       113 v~~YL~~~a-~~fgl~~~I~~~t~V~~V~~~-~~~-w~V~~~~~~~~~~~~~~d-~VIvAtG~~~~P~~P~ipG~  183 (461)
T PLN02172        113 VLAYLQDFA-REFKIEEMVRFETEVVRVEPV-DGK-WRVQSKNSGGFSKDEIFD-AVVVCNGHYTEPNVAHIPGI  183 (461)
T ss_pred             HHHHHHHHH-HHcCCcceEEecCEEEEEeec-CCe-EEEEEEcCCCceEEEEcC-EEEEeccCCCCCcCCCCCCc
Confidence            446787777 677877  8999999999876 443 234443322333355677 59999998777766544444

>TIGR02360 pbenz_hydroxyl 4-hydroxybenzoate 3-monooxygenase

Probab=98.58  E-value=6.8e-07  Score=98.62  Aligned_cols=34  Identities=21%  Similarity=0.417  Sum_probs=32.2

Q ss_pred             cccEEEECCcHHHHHHHHHHHhcCCCcEEEEccCC
Q psy14408        433 CFDIIIVGASAAGCVLANRLSEVSSLKVLLIEAGG  467 (720)
Q Consensus       433 eyDVVIIGSGiAGLvAA~~LAea~G~KVLVLEKG~  467 (720)
                      .+||||||||++|+++|+.|+++ |++|+||||..
T Consensus         2 ~~dV~IVGaG~aGl~~A~~L~~~-G~~v~viE~~~   35 (390)
T TIGR02360         2 KTQVAIIGAGPSGLLLGQLLHKA-GIDNVILERQS   35 (390)
T ss_pred             CceEEEECccHHHHHHHHHHHHC-CCCEEEEECCC
Confidence            46999999999999999999999 99999999985

Members of this family are the enzyme 4-hydroxybenzoate 3-monooxygenase, also called p-hydroxybenzoate hydroxylase. It converts 4-hydroxybenzoate + NADPH + molecular oxygen to protocatechuate + NADPH + water. It contains monooxygenase (pfam01360) and FAD binding (pfam01494) domains. Pathways that contain this enzyme include the protocatechuate 4,5-degradation pathway.

>PRK07236 hypothetical protein; Provisional

Probab=98.58  E-value=8.8e-07  Score=97.13  Aligned_cols=36  Identities=19%  Similarity=0.166  Sum_probs=33.3

Q ss_pred             CCcccEEEECCcHHHHHHHHHHHhcCCCcEEEEccCC
Q psy14408        431 GDCFDIIIVGASAAGCVLANRLSEVSSLKVLLIEAGG  467 (720)
Q Consensus       431 d~eyDVVIIGSGiAGLvAA~~LAea~G~KVLVLEKG~  467 (720)
                      +...||||||||++||++|+.|+++ |++|+|+||..
T Consensus         4 ~~~~~ViIVGaG~aGl~~A~~L~~~-G~~v~v~E~~~   39 (386)
T PRK07236          4 MSGPRAVVIGGSLGGLFAALLLRRA-GWDVDVFERSP   39 (386)
T ss_pred             CCCCeEEEECCCHHHHHHHHHHHhC-CCCEEEEecCC
Confidence            4567999999999999999999999 99999999974

>KOG2665|consensus

Probab=98.57  E-value=2.7e-07  Score=98.53  Aligned_cols=40  Identities=33%  Similarity=0.462  Sum_probs=35.1

Q ss_pred             CCCcccEEEECCcHHHHHHHHHHHhc-CCCcEEEEccCCCC
Q psy14408        430 SGDCFDIIIVGASAAGCVLANRLSEV-SSLKVLLIEAGGDT  469 (720)
Q Consensus       430 ~d~eyDVVIIGSGiAGLvAA~~LAea-~G~KVLVLEKG~~~  469 (720)
                      ....||.||||||+.||++|++|.-+ ++++|+||||...+
T Consensus        45 s~~~~D~VvvGgGiVGlAsARel~lrhp~l~V~vleke~~l   85 (453)
T KOG2665|consen   45 SKERYDLVVVGGGIVGLASARELSLRHPSLKVAVLEKEKSL   85 (453)
T ss_pred             ccccccEEEECCceeehhhhHHHhhcCCCceEEeeehhhhh
Confidence            45789999999999999999999854 69999999998654

>PRK08849 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Provisional

Probab=98.57  E-value=6.5e-07  Score=98.16  Aligned_cols=35  Identities=29%  Similarity=0.469  Sum_probs=32.5

Q ss_pred             CcccEEEECCcHHHHHHHHHHHhcCCCcEEEEccCC
Q psy14408        432 DCFDIIIVGASAAGCVLANRLSEVSSLKVLLIEAGG  467 (720)
Q Consensus       432 ~eyDVVIIGSGiAGLvAA~~LAea~G~KVLVLEKG~  467 (720)
                      .++||||||||++|+++|+.|++. |++|+|+||..
T Consensus         2 ~~~dv~IvGgG~aGl~~A~~L~~~-G~~v~l~E~~~   36 (384)
T PRK08849          2 NKYDIAVVGGGMVGAATALGFAKQ-GRSVAVIEGGE   36 (384)
T ss_pred             CcccEEEECcCHHHHHHHHHHHhC-CCcEEEEcCCC
Confidence            357999999999999999999999 99999999873

>PRK06753 hypothetical protein; Provisional

Probab=98.57  E-value=1.2e-06  Score=95.05  Aligned_cols=33  Identities=30%  Similarity=0.376  Sum_probs=31.4

Q ss_pred             cEEEECCcHHHHHHHHHHHhcCCCcEEEEccCCC
Q psy14408        435 DIIIVGASAAGCVLANRLSEVSSLKVLLIEAGGD  468 (720)
Q Consensus       435 DVVIIGSGiAGLvAA~~LAea~G~KVLVLEKG~~  468 (720)
                      ||||||||++||++|+.|+++ |++|+|+||...
T Consensus         2 ~V~IvGgG~aGl~~A~~L~~~-g~~v~v~E~~~~   34 (373)
T PRK06753          2 KIAIIGAGIGGLTAAALLQEQ-GHEVKVFEKNES   34 (373)
T ss_pred             EEEEECCCHHHHHHHHHHHhC-CCcEEEEecCCc
Confidence            899999999999999999999 999999999853

>PRK06370 mercuric reductase; Validated

Probab=98.55  E-value=2.7e-06  Score=95.86  Aligned_cols=36  Identities=42%  Similarity=0.604  Sum_probs=33.4

Q ss_pred             CCcccEEEECCcHHHHHHHHHHHhcCCCcEEEEccCC
Q psy14408        431 GDCFDIIIVGASAAGCVLANRLSEVSSLKVLLIEAGG  467 (720)
Q Consensus       431 d~eyDVVIIGSGiAGLvAA~~LAea~G~KVLVLEKG~  467 (720)
                      +.+|||||||||.+|++||++|++. |++|+|+||+.
T Consensus         3 ~~~~DvvVIG~GpaG~~aA~~aa~~-G~~v~lie~~~   38 (463)
T PRK06370          3 AQRYDAIVIGAGQAGPPLAARAAGL-GMKVALIERGL   38 (463)
T ss_pred             CccccEEEECCCHHHHHHHHHHHhC-CCeEEEEecCc
Confidence            4568999999999999999999999 99999999974

>PRK11445 putative oxidoreductase; Provisional

Probab=98.55  E-value=1.9e-06  Score=93.69  Aligned_cols=32  Identities=34%  Similarity=0.588  Sum_probs=30.1

Q ss_pred             ccEEEECCcHHHHHHHHHHHhcCCCcEEEEccCC
Q psy14408        434 FDIIIVGASAAGCVLANRLSEVSSLKVLLIEAGG  467 (720)
Q Consensus       434 yDVVIIGSGiAGLvAA~~LAea~G~KVLVLEKG~  467 (720)
                      +||||||||++|+++|+.|+++  ++|+||||..
T Consensus         2 ~dV~IvGaGpaGl~~A~~La~~--~~V~liE~~~   33 (351)
T PRK11445          2 YDVAIIGLGPAGSALARLLAGK--MKVIAIDKKH   33 (351)
T ss_pred             ceEEEECCCHHHHHHHHHHhcc--CCEEEEECCC
Confidence            6999999999999999999986  8999999985

>TIGR00136 gidA glucose-inhibited division protein A

Probab=98.54  E-value=1e-06  Score=102.46  Aligned_cols=32  Identities=34%  Similarity=0.647  Sum_probs=31.0

Q ss_pred             ccEEEECCcHHHHHHHHHHHhcCCCcEEEEccC
Q psy14408        434 FDIIIVGASAAGCVLANRLSEVSSLKVLLIEAG  466 (720)
Q Consensus       434 yDVVIIGSGiAGLvAA~~LAea~G~KVLVLEKG  466 (720)
                      |||||||||.+|+.+|..||+. |.+|+|||++
T Consensus         1 yDViVIGaG~AGl~aA~ala~~-G~~v~Lie~~   32 (617)
T TIGR00136         1 FDVIVIGGGHAGCEAALAAARM-GAKTLLLTLN   32 (617)
T ss_pred             CeEEEECccHHHHHHHHHHHHC-CCCEEEEecc
Confidence            6999999999999999999999 9999999987

GidA, the longer of two forms of GidA-related proteins, appears to be present in all complete eubacterial genomes so far, as well as Saccharomyces cerevisiae. A subset of these organisms have a closely related protein. GidA is absent in the Archaea. It appears to act with MnmE, in an alpha2/beta2 heterotetramer, in the 5-carboxymethylaminomethyl modification of uridine 34 in certain tRNAs. The shorter, related protein, previously called gid or gidA(S), is now called TrmFO (see model TIGR00137).

>PRK06115 dihydrolipoamide dehydrogenase; Reviewed

Probab=98.54  E-value=3.7e-07  Score=103.21  Aligned_cols=34  Identities=29%  Similarity=0.544  Sum_probs=32.0

Q ss_pred             CcccEEEECCcHHHHHHHHHHHhcCCCcEEEEccC
Q psy14408        432 DCFDIIIVGASAAGCVLANRLSEVSSLKVLLIEAG  466 (720)
Q Consensus       432 ~eyDVVIIGSGiAGLvAA~~LAea~G~KVLVLEKG  466 (720)
                      .+|||||||||.+|++||.+||+. |++|+|||+.
T Consensus         2 ~~~DvvVIG~GpaG~~AA~~aa~~-G~~V~liE~~   35 (466)
T PRK06115          2 ASYDVVIIGGGPGGYNAAIRAGQL-GLKVACVEGR   35 (466)
T ss_pred             CcccEEEECCCHHHHHHHHHHHhC-CCeEEEEecC
Confidence            458999999999999999999999 9999999974

>PRK05249 soluble pyridine nucleotide transhydrogenase; Provisional

Probab=98.53  E-value=9.8e-07  Score=99.11  Aligned_cols=36  Identities=22%  Similarity=0.315  Sum_probs=33.4

Q ss_pred             CCcccEEEECCcHHHHHHHHHHHhcCCCcEEEEccCC
Q psy14408        431 GDCFDIIIVGASAAGCVLANRLSEVSSLKVLLIEAGG  467 (720)
Q Consensus       431 d~eyDVVIIGSGiAGLvAA~~LAea~G~KVLVLEKG~  467 (720)
                      +..|||||||||++|+.||++|++. |++|+||||+.
T Consensus         3 ~~~yDvvVIGaGpaG~~aA~~la~~-G~~v~liE~~~   38 (461)
T PRK05249          3 MYDYDLVVIGSGPAGEGAAMQAAKL-GKRVAVIERYR   38 (461)
T ss_pred             CccccEEEECCCHHHHHHHHHHHhC-CCEEEEEeccc
Confidence            4568999999999999999999999 99999999974

>PRK08132 FAD-dependent oxidoreductase; Provisional

Probab=98.52  E-value=2e-06  Score=98.99  Aligned_cols=36  Identities=25%  Similarity=0.442  Sum_probs=33.5

Q ss_pred             CCcccEEEECCcHHHHHHHHHHHhcCCCcEEEEccCC
Q psy14408        431 GDCFDIIIVGASAAGCVLANRLSEVSSLKVLLIEAGG  467 (720)
Q Consensus       431 d~eyDVVIIGSGiAGLvAA~~LAea~G~KVLVLEKG~  467 (720)
                      ..++||||||||++||++|+.|++. |++|+||||..
T Consensus        21 ~~~~dVlIVGaGpaGl~lA~~L~~~-G~~v~viE~~~   56 (547)
T PRK08132         21 PARHPVVVVGAGPVGLALAIDLAQQ-GVPVVLLDDDD   56 (547)
T ss_pred             CCcCCEEEECCCHHHHHHHHHHHhC-CCcEEEEeCCC
Confidence            3567999999999999999999999 99999999984

>PLN02576 protoporphyrinogen oxidase

Probab=98.51  E-value=5.9e-07  Score=101.56  Aligned_cols=41  Identities=27%  Similarity=0.332  Sum_probs=35.8

Q ss_pred             CcccEEEECCcHHHHHHHHHHHhcCCCcEEEEccCCCCCCC
Q psy14408        432 DCFDIIIVGASAAGCVLANRLSEVSSLKVLLIEAGGDTPIH  472 (720)
Q Consensus       432 ~eyDVVIIGSGiAGLvAA~~LAea~G~KVLVLEKG~~~~~s  472 (720)
                      .++||||||||++||+||++|+++.|++|+||||....++.
T Consensus        11 ~~~~v~IIGaGisGL~aA~~L~~~~g~~v~vlEa~~rvGGr   51 (496)
T PLN02576         11 SSKDVAVVGAGVSGLAAAYALASKHGVNVLVTEARDRVGGN   51 (496)
T ss_pred             CCCCEEEECcCHHHHHHHHHHHHhcCCCEEEEecCCCCCCc
Confidence            34699999999999999999998637999999999877655

>PTZ00367 squalene epoxidase; Provisional

Probab=98.50  E-value=1.4e-06  Score=101.27  Aligned_cols=35  Identities=49%  Similarity=0.588  Sum_probs=32.8

Q ss_pred             CcccEEEECCcHHHHHHHHHHHhcCCCcEEEEccCC
Q psy14408        432 DCFDIIIVGASAAGCVLANRLSEVSSLKVLLIEAGG  467 (720)
Q Consensus       432 ~eyDVVIIGSGiAGLvAA~~LAea~G~KVLVLEKG~  467 (720)
                      .++||||||||++|+++|+.|+++ |++|+||||..
T Consensus        32 ~~~dViIVGaGiaGlalA~aLar~-G~~V~VlEr~~   66 (567)
T PTZ00367         32 YDYDVIIVGGSIAGPVLAKALSKQ-GRKVLMLERDL   66 (567)
T ss_pred             cCccEEEECCCHHHHHHHHHHHhc-CCEEEEEcccc
Confidence            468999999999999999999999 99999999973

>TIGR01424 gluta_reduc_2 glutathione-disulfide reductase, plant

Probab=98.50  E-value=4.9e-07  Score=101.51  Aligned_cols=33  Identities=24%  Similarity=0.394  Sum_probs=31.8

Q ss_pred             cccEEEECCcHHHHHHHHHHHhcCCCcEEEEccC
Q psy14408        433 CFDIIIVGASAAGCVLANRLSEVSSLKVLLIEAG  466 (720)
Q Consensus       433 eyDVVIIGSGiAGLvAA~~LAea~G~KVLVLEKG  466 (720)
                      +|||||||||.+|++||++||+. |++|+|+||+
T Consensus         2 ~yDvvVIG~GpaG~~aA~~aa~~-G~~V~lie~~   34 (446)
T TIGR01424         2 DYDLFVIGAGSGGVRAARLAANH-GAKVAIAEEP   34 (446)
T ss_pred             cccEEEECCCHHHHHHHHHHHhC-CCcEEEEecC
Confidence            58999999999999999999999 9999999985

The tripeptide glutathione is an important reductant, e.g., for maintaining the cellular thiol/disulfide status and for protecting against reactive oxygen species such as hydrogen peroxide. Glutathione-disulfide reductase regenerates reduced glutathione from oxidized glutathione (glutathione disulfide) + NADPH. This model represents one of two closely related subfamilies of glutathione-disulfide reductase. Both are closely related to trypanothione reductase, and separate models are built so each of the three can describe proteins with conserved function. This model describes glutathione-disulfide reductases of plants and some bacteria, including cyanobacteria.

>PRK05675 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed

Probab=98.49  E-value=1.5e-06  Score=100.96  Aligned_cols=59  Identities=19%  Similarity=0.242  Sum_probs=47.6

Q ss_pred             HHHHHHhcCCCeEEEcCeEEEEEEEccCCcEEEEEEEec-CCcEEEEEcCcEEEEccCCcch
Q psy14408        639 YLTPIAGKRTNLYVLKRSKVTKVIINDQNVATGVEYVNS-KGETVRVTANKEVILTAGAIAN  699 (720)
Q Consensus       639 ~L~~Aa~e~aGVkIi~gt~VtkIl~e~gGrAtGV~v~dt-~G~e~tIkAkK~VVVAAGa~~S  699 (720)
                      .|.+.+ ++.|++|++++.|++|+.+++|+|.||...+. +|+...|+|+ .||||||++..
T Consensus       131 ~L~~~~-~~~gi~i~~~~~~~~Li~~~~g~v~Gv~~~~~~~g~~~~i~Ak-aVVLATGG~~~  190 (570)
T PRK05675        131 TLYQGN-LKNGTTFLNEWYAVDLVKNQDGAVVGVIAICIETGETVYIKSK-ATVLATGGAGR  190 (570)
T ss_pred             HHHHHH-hccCCEEEECcEEEEEEEcCCCeEEEEEEEEcCCCcEEEEecC-eEEECCCCccc
Confidence            344444 47899999999999999853689999998653 6777789996 79999999874

>COG2907 Predicted NAD/FAD-binding protein [General function prediction only]

Probab=98.47  E-value=7.5e-07  Score=96.33  Aligned_cols=38  Identities=29%  Similarity=0.260  Sum_probs=34.2

Q ss_pred             ccEEEECCcHHHHHHHHHHHhcCCCcEEEEccCCCCCCCc
Q psy14408        434 FDIIIVGASAAGCVLANRLSEVSSLKVLLIEAGGDTPIHS  473 (720)
Q Consensus       434 yDVVIIGSGiAGLvAA~~LAea~G~KVLVLEKG~~~~~ss  473 (720)
                      -+|.|||+|++||+||+.|+++  ++|+|+|++...++..
T Consensus         9 ~~IAVIGsGisGLSAA~~Ls~r--hdVTLfEA~~rlGGha   46 (447)
T COG2907           9 RKIAVIGSGISGLSAAWLLSRR--HDVTLFEADRRLGGHA   46 (447)
T ss_pred             cceEEEcccchhhhhHHhhhcc--cceEEEeccccccCcc
Confidence            4899999999999999999998  8999999998886553

>COG1249 Lpd Pyruvate/2-oxoglutarate dehydrogenase complex, dihydrolipoamide dehydrogenase (E3) component, and related enzymes [Energy production and conversion]

Probab=98.45  E-value=3.3e-06  Score=95.72  Aligned_cols=38  Identities=37%  Similarity=0.602  Sum_probs=34.6

Q ss_pred             CCcccEEEECCcHHHHHHHHHHHhcCCCcEEEEccCCCC
Q psy14408        431 GDCFDIIIVGASAAGCVLANRLSEVSSLKVLLIEAGGDT  469 (720)
Q Consensus       431 d~eyDVVIIGSGiAGLvAA~~LAea~G~KVLVLEKG~~~  469 (720)
                      +.+|||||||+|.+|.+||.+||+. |.||+|+|++...
T Consensus         2 ~~~yDvvVIG~GpaG~~aA~raa~~-G~kvalvE~~~~l   39 (454)
T COG1249           2 MKEYDVVVIGAGPAGYVAAIRAAQL-GLKVALVEKGERL   39 (454)
T ss_pred             CccccEEEECCCHHHHHHHHHHHhC-CCCEEEEeecCCc
Confidence            4579999999999999999999999 9999999999533

>PF04820 Trp_halogenase: Tryptophan halogenase; InterPro: IPR006905 Tryptophan halogenase catalyses the chlorination of tryptophan to form 7-chlorotryptophan

Probab=98.45  E-value=1.2e-06  Score=99.31  Aligned_cols=58  Identities=21%  Similarity=0.284  Sum_probs=40.1

Q ss_pred             chhHHHHHHHHHHhcCCCeEEEcCeEEEEEEEccCCcEEEEEEEecCCcEEEEEcCcEEEEccCC
Q psy14408        632 RFSAADAYLTPIAGKRTNLYVLKRSKVTKVIINDQNVATGVEYVNSKGETVRVTANKEVILTAGA  696 (720)
Q Consensus       632 k~~aa~a~L~~Aa~e~aGVkIi~gt~VtkIl~e~gGrAtGV~v~dt~G~e~tIkAkK~VVVAAGa  696 (720)
                      ....+..+|.+.+ ++.||++++++ |+++..+++|.+++|++.+  |  .+|+|+ -||=|+|.
T Consensus       152 DR~~fd~~L~~~A-~~~Gv~~~~g~-V~~v~~~~~g~i~~v~~~~--g--~~i~ad-~~IDASG~  209 (454)
T PF04820_consen  152 DRAKFDQFLRRHA-EERGVEVIEGT-VVDVELDEDGRITAVRLDD--G--RTIEAD-FFIDASGR  209 (454)
T ss_dssp             EHHHHHHHHHHHH-HHTT-EEEET--EEEEEE-TTSEEEEEEETT--S--EEEEES-EEEE-SGG
T ss_pred             eHHHHHHHHHHHH-hcCCCEEEeCE-EEEEEEcCCCCEEEEEECC--C--CEEEEe-EEEECCCc
Confidence            3445566777766 57899999985 7787776578888888766  5  479997 57777774

This is the first step in the biosynthesis of pyrrolnitrin, an antibiotic with broad-spectrum anti-fungal activity. Tryptophan halogenase is NADH-dependent [].; PDB: 2PYX_B 2OAL_B 2E4G_A 2OAM_A 2OA1_B 2O9Z_A 3I3L_A 2AQJ_A 2ARD_A 2JKC_A ....

>PLN02463 lycopene beta cyclase

Probab=98.44  E-value=2.2e-06  Score=97.01  Aligned_cols=36  Identities=31%  Similarity=0.533  Sum_probs=33.0

Q ss_pred             CCcccEEEECCcHHHHHHHHHHHhcCCCcEEEEccCC
Q psy14408        431 GDCFDIIIVGASAAGCVLANRLSEVSSLKVLLIEAGG  467 (720)
Q Consensus       431 d~eyDVVIIGSGiAGLvAA~~LAea~G~KVLVLEKG~  467 (720)
                      ...+||||||||++|+++|..|+++ |++|+|||+..
T Consensus        26 ~~~~DVvIVGaGpAGLalA~~La~~-Gl~V~liE~~~   61 (447)
T PLN02463         26 SRVVDLVVVGGGPAGLAVAQQVSEA-GLSVCCIDPSP   61 (447)
T ss_pred             ccCceEEEECCCHHHHHHHHHHHHC-CCeEEEeccCc
Confidence            3458999999999999999999999 99999999863

>PLN02487 zeta-carotene desaturase

Probab=98.44  E-value=1.1e-06  Score=102.11  Aligned_cols=38  Identities=24%  Similarity=0.168  Sum_probs=34.6

Q ss_pred             cccEEEECCcHHHHHHHHHHHhcCCCcEEEEccCCCCCC
Q psy14408        433 CFDIIIVGASAAGCVLANRLSEVSSLKVLLIEAGGDTPI  471 (720)
Q Consensus       433 eyDVVIIGSGiAGLvAA~~LAea~G~KVLVLEKG~~~~~  471 (720)
                      ..+|+|||||++||++|+.|+++ |++|+|+|+....++
T Consensus        75 ~~~v~iiG~G~~Gl~~a~~L~~~-g~~v~i~E~~~~~gG  112 (569)
T PLN02487         75 KLKVAIIGAGLAGMSTAVELLDQ-GHEVDIYESRPFIGG  112 (569)
T ss_pred             CCeEEEECCCHHHHHHHHHHHhC-CCeeEEEecCCCCCC
Confidence            35999999999999999999999 999999999877654

>TIGR01372 soxA sarcosine oxidase, alpha subunit family, heterotetrameric form

Probab=98.44  E-value=2.5e-06  Score=104.98  Aligned_cols=61  Identities=18%  Similarity=0.201  Sum_probs=48.7

Q ss_pred             cCCCeEEEcCeEEEEEEEccCCcEEEEEEEecCCcEEEEEcCcEEEEccCCcchHHHHHHcCCC
Q psy14408        646 KRTNLYVLKRSKVTKVIINDQNVATGVEYVNSKGETVRVTANKEVILTAGAIANAQLLLLSGIG  709 (720)
Q Consensus       646 e~aGVkIi~gt~VtkIl~e~gGrAtGV~v~dt~G~e~tIkAkK~VVVAAGa~~Sp~LLl~SGIg  709 (720)
                      ++.|++|++++.|++|..  ++++.+|++...+|...+|.|+ .||++.|......|+...|..
T Consensus       362 ~~~GV~i~~~~~v~~i~g--~~~v~~V~l~~~~g~~~~i~~D-~V~va~G~~Pnt~L~~~lg~~  422 (985)
T TIGR01372       362 RELGIEVLTGHVVAATEG--GKRVSGVAVARNGGAGQRLEAD-ALAVSGGWTPVVHLFSQRGGK  422 (985)
T ss_pred             HHcCCEEEcCCeEEEEec--CCcEEEEEEEecCCceEEEECC-EEEEcCCcCchhHHHHhcCCC
Confidence            478999999999999974  3567888887433555689998 599999988888888877765

This model describes the alpha subunit of a family of known and putative heterotetrameric sarcosine oxidases. Five operons of such oxidases are found in Mesorhizobium loti and three in Agrobacterium tumefaciens, a high enough copy number to suggest that not all members are share the same function. The model is designated as subfamily rather than equivalog for this reason.Sarcosine oxidase catalyzes the oxidative demethylation of sarcosine to glycine. The reaction converts tetrahydrofolate to 5,10-methylene-tetrahydrofolate. The enzyme is known in monomeric and heterotetrameric (alpha,beta,gamma,delta) forms

>TIGR01989 COQ6 Ubiquinone biosynthesis mono0xygenase COQ6

Probab=98.44  E-value=2.6e-06  Score=95.44  Aligned_cols=33  Identities=45%  Similarity=0.720  Sum_probs=31.1

Q ss_pred             ccEEEECCcHHHHHHHHHHHh----cCCCcEEEEccCC
Q psy14408        434 FDIIIVGASAAGCVLANRLSE----VSSLKVLLIEAGG  467 (720)
Q Consensus       434 yDVVIIGSGiAGLvAA~~LAe----a~G~KVLVLEKG~  467 (720)
                      |||||||||++|+++|+.|++    + |++|+||||..
T Consensus         1 ~DV~IVGaGp~Gl~~A~~La~~~~~~-G~~v~viE~~~   37 (437)
T TIGR01989         1 FDVVIVGGGPVGLALAAALGNNPLTK-DLKVLLLDAVD   37 (437)
T ss_pred             CcEEEECCcHHHHHHHHHHhcCcccC-CCeEEEEeCCC
Confidence            699999999999999999999    7 99999999963

This model represents the monooxygenase responsible for the 4-hydroxylateion of the phenol ring in the aerobic biosynthesis of ubiquinone

>TIGR01790 carotene-cycl lycopene cyclase family protein

Probab=98.42  E-value=2.8e-06  Score=92.77  Aligned_cols=32  Identities=34%  Similarity=0.547  Sum_probs=30.7

Q ss_pred             cEEEECCcHHHHHHHHHHHhcCCCcEEEEccCC
Q psy14408        435 DIIIVGASAAGCVLANRLSEVSSLKVLLIEAGG  467 (720)
Q Consensus       435 DVVIIGSGiAGLvAA~~LAea~G~KVLVLEKG~  467 (720)
                      ||||||||++|+++|+.|+++ |++|+|||++.
T Consensus         1 DviIiGaG~AGl~~A~~la~~-g~~v~liE~~~   32 (388)
T TIGR01790         1 DLAVIGGGPAGLAIALELARP-GLRVQLIEPHP   32 (388)
T ss_pred             CEEEECCCHHHHHHHHHHHhC-CCeEEEEccCC
Confidence            899999999999999999999 99999999974

This family includes lycopene beta and epsilion cyclases (which form beta and delta carotene, respectively) from bacteria and plants as well as the plant capsanthin/capsorubin and neoxanthin cyclases which appear to have evolved from the plant lycopene cyclases. The plant lycopene epsilon cyclases also transform neurosporene to alpha zeacarotene.

>PRK06475 salicylate hydroxylase; Provisional

Probab=98.42  E-value=3.7e-06  Score=92.79  Aligned_cols=32  Identities=31%  Similarity=0.349  Sum_probs=30.7

Q ss_pred             cEEEECCcHHHHHHHHHHHhcCCCcEEEEccCC
Q psy14408        435 DIIIVGASAAGCVLANRLSEVSSLKVLLIEAGG  467 (720)
Q Consensus       435 DVVIIGSGiAGLvAA~~LAea~G~KVLVLEKG~  467 (720)
                      +|+|||||++||++|+.|+++ |++|+|+||..
T Consensus         4 ~V~IvGgGiaGl~~A~~L~~~-G~~V~i~E~~~   35 (400)
T PRK06475          4 SPLIAGAGVAGLSAALELAAR-GWAVTIIEKAQ   35 (400)
T ss_pred             cEEEECCCHHHHHHHHHHHhC-CCcEEEEecCC
Confidence            899999999999999999999 99999999974

>PRK06996 hypothetical protein; Provisional

Probab=98.41  E-value=2.7e-06  Score=93.89  Aligned_cols=38  Identities=42%  Similarity=0.543  Sum_probs=33.3

Q ss_pred             cCCCcccEEEECCcHHHHHHHHHHHhcCC----CcEEEEccCC
Q psy14408        429 KSGDCFDIIIVGASAAGCVLANRLSEVSS----LKVLLIEAGG  467 (720)
Q Consensus       429 ~~d~eyDVVIIGSGiAGLvAA~~LAea~G----~KVLVLEKG~  467 (720)
                      +..+++||||||||++|+++|+.|+++ |    ++|+|||+..
T Consensus         7 ~~~~~~dv~IvGgGpaG~~~A~~L~~~-g~~~g~~v~l~e~~~   48 (398)
T PRK06996          7 MAAPDFDIAIVGAGPVGLALAGWLARR-SATRALSIALIDARE   48 (398)
T ss_pred             ccCCCCCEEEECcCHHHHHHHHHHhcC-CCcCCceEEEecCCC
Confidence            345678999999999999999999998 6    5799999974

>PLN02676 polyamine oxidase

Probab=98.41  E-value=4.7e-06  Score=95.14  Aligned_cols=40  Identities=33%  Similarity=0.431  Sum_probs=35.8

Q ss_pred             CcccEEEECCcHHHHHHHHHHHhcCCC-cEEEEccCCCCCCC
Q psy14408        432 DCFDIIIVGASAAGCVLANRLSEVSSL-KVLLIEAGGDTPIH  472 (720)
Q Consensus       432 ~eyDVVIIGSGiAGLvAA~~LAea~G~-KVLVLEKG~~~~~s  472 (720)
                      ..+||||||||++||+||++|+++ |+ +|+||||....++.
T Consensus        25 ~~~~v~IIGaG~sGL~aa~~L~~~-g~~~v~vlE~~~~~GG~   65 (487)
T PLN02676         25 PSPSVIIVGAGMSGISAAKTLSEA-GIEDILILEATDRIGGR   65 (487)
T ss_pred             CCCCEEEECCCHHHHHHHHHHHHc-CCCcEEEecCCCCCCCc
Confidence            356999999999999999999999 98 59999999877654

>PRK06467 dihydrolipoamide dehydrogenase; Reviewed

Probab=98.41  E-value=1.3e-06  Score=98.94  Aligned_cols=35  Identities=23%  Similarity=0.344  Sum_probs=32.6

Q ss_pred             CcccEEEECCcHHHHHHHHHHHhcCCCcEEEEccCC
Q psy14408        432 DCFDIIIVGASAAGCVLANRLSEVSSLKVLLIEAGG  467 (720)
Q Consensus       432 ~eyDVVIIGSGiAGLvAA~~LAea~G~KVLVLEKG~  467 (720)
                      .+|||||||||.+|+.||.+||+. |++|+||||..
T Consensus         3 ~~~DvvVIG~GpaG~~aA~~aa~~-G~~V~lie~~~   37 (471)
T PRK06467          3 IKTQVVVLGAGPAGYSAAFRAADL-GLETVCVERYS   37 (471)
T ss_pred             ccceEEEECCCHHHHHHHHHHHHC-CCcEEEEecCC
Confidence            358999999999999999999999 99999999863

>TIGR03140 AhpF alkyl hydroperoxide reductase, F subunit

Probab=98.40  E-value=3e-06  Score=97.18  Aligned_cols=58  Identities=21%  Similarity=0.398  Sum_probs=45.8

Q ss_pred             CCCeEEEcCeEEEEEEEccCCcEEEEEEEec-CCcEEEEEcCcEEEEccCCcchHHHHHHc
Q psy14408        647 RTNLYVLKRSKVTKVIINDQNVATGVEYVNS-KGETVRVTANKEVILTAGAIANAQLLLLS  706 (720)
Q Consensus       647 ~aGVkIi~gt~VtkIl~e~gGrAtGV~v~dt-~G~e~tIkAkK~VVVAAGa~~Sp~LLl~S  706 (720)
                      +.|++|+.++.|++|..+ ++++.+|++.+. +|+..++.++ .||+|+|......+|...
T Consensus       400 ~~gV~i~~~~~v~~i~~~-~~~v~~v~~~~~~~~~~~~i~~D-~vi~a~G~~Pn~~~l~~~  458 (515)
T TIGR03140       400 LPNVDILTSAQTTEIVGD-GDKVTGIRYQDRNSGEEKQLDLD-GVFVQIGLVPNTEWLKDA  458 (515)
T ss_pred             CCCCEEEECCeeEEEEcC-CCEEEEEEEEECCCCcEEEEEcC-EEEEEeCCcCCchHHhhh
Confidence            369999999999999866 678888988763 3555689998 599999987777766543

This enzyme is the partner of the peroxiredoxin (alkyl hydroperoxide reductase) AhpC which contains the peroxide-reactive cysteine. AhpF contains the reductant (NAD(P)H) binding domain (pfam00070) and presumably acts to resolve the disulfide which forms after oxidation of the active site cysteine in AphC. This proteins contains two paired conserved cysteine motifs, CxxCP and CxHCDGP.

>PLN02507 glutathione reductase

Probab=98.36  E-value=3.7e-06  Score=96.20  Aligned_cols=35  Identities=26%  Similarity=0.307  Sum_probs=32.6

Q ss_pred             CCcccEEEECCcHHHHHHHHHHHhcCCCcEEEEccC
Q psy14408        431 GDCFDIIIVGASAAGCVLANRLSEVSSLKVLLIEAG  466 (720)
Q Consensus       431 d~eyDVVIIGSGiAGLvAA~~LAea~G~KVLVLEKG  466 (720)
                      ..+|||||||||.+|+.||.+|++. |+||+|||+.
T Consensus        23 ~~~yDvvVIG~GpaG~~aA~~a~~~-G~~V~liE~~   57 (499)
T PLN02507         23 HYDFDLFVIGAGSGGVRAARFSANF-GAKVGICELP   57 (499)
T ss_pred             ccccCEEEECCCHHHHHHHHHHHHC-CCeEEEEecc
Confidence            4578999999999999999999999 9999999973

>COG3075 GlpB Anaerobic glycerol-3-phosphate dehydrogenase [Amino acid transport and metabolism]

Probab=98.36  E-value=1.1e-06  Score=94.43  Aligned_cols=59  Identities=15%  Similarity=0.140  Sum_probs=49.2

Q ss_pred             HHHHHhcCCCeEEEcCeEEEEEEEccCCcEEEEEEEecCCcEEEEEcCcEEEEccCCcchHHHH
Q psy14408        640 LTPIAGKRTNLYVLKRSKVTKVIINDQNVATGVEYVNSKGETVRVTANKEVILTAGAIANAQLL  703 (720)
Q Consensus       640 L~~Aa~e~aGVkIi~gt~VtkIl~e~gGrAtGV~v~dt~G~e~tIkAkK~VVVAAGa~~Sp~LL  703 (720)
                      |.... ++.|+.++.+-+|.+..+. +++|++|.+++  +....++|+ .+|+|+|++-+..|.
T Consensus       264 L~~~f-~~~Gg~~m~Gd~V~~a~~~-~~~v~~i~trn--~~diP~~a~-~~VLAsGsffskGLv  322 (421)
T COG3075         264 LQRQF-EQLGGLWMPGDEVKKATCK-GGRVTEIYTRN--HADIPLRAD-FYVLASGSFFSKGLV  322 (421)
T ss_pred             HHHHH-HHcCceEecCCceeeeeee-CCeEEEEEecc--cccCCCChh-Heeeeccccccccch
Confidence            44445 5889999999999999998 99999998886  555789998 599999998887654

>TIGR01316 gltA glutamate synthase (NADPH), homotetrameric

Probab=98.35  E-value=3.9e-06  Score=94.67  Aligned_cols=62  Identities=11%  Similarity=0.174  Sum_probs=45.9

Q ss_pred             CCCeEEEcCeEEEEEEEccCCcEEEEEEEec-------C---------CcEEEEEcCcEEEEccCCcchHHHHHHcCCC
Q psy14408        647 RTNLYVLKRSKVTKVIINDQNVATGVEYVNS-------K---------GETVRVTANKEVILTAGAIANAQLLLLSGIG  709 (720)
Q Consensus       647 ~aGVkIi~gt~VtkIl~e~gGrAtGV~v~dt-------~---------G~e~tIkAkK~VVVAAGa~~Sp~LLl~SGIg  709 (720)
                      +.|++|++++.+++|+.+++|++++|++...       +         |.+.+|.++ .||+|.|-.....+|...|+.
T Consensus       321 ~~GV~~~~~~~~~~i~~~~~g~v~~v~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~D-~Vi~AiG~~p~~~~l~~~gl~  398 (449)
T TIGR01316       321 EEGVKFHFLCQPVEIIGDEEGNVRAVKFRKMDCQEQIDSGERRFLPCGDAECKLEAD-AVIVAIGNGSNPIMAETTRLK  398 (449)
T ss_pred             hCCCEEEeccCcEEEEEcCCCeEEEEEEEEEEecCcCCCCCeeeeecCCceEEEECC-EEEECCCCCCCchhhhccCcc
Confidence            7899999999999998653578888887521       1         334579998 599999976555555556664

This protein is homologous to the small subunit of NADPH and NADH forms of glutamate synthase as found in eukaryotes and some bacteria. This protein is found in numerous species having no homolog of the glutamate synthase large subunit. The prototype of the family, from Pyrococcus sp. KOD1, was shown to be active as a homotetramer and to require NADPH.

>PRK06327 dihydrolipoamide dehydrogenase; Validated

Probab=98.34  E-value=2.3e-06  Score=96.99  Aligned_cols=34  Identities=41%  Similarity=0.615  Sum_probs=32.0

Q ss_pred             CcccEEEECCcHHHHHHHHHHHhcCCCcEEEEccC
Q psy14408        432 DCFDIIIVGASAAGCVLANRLSEVSSLKVLLIEAG  466 (720)
Q Consensus       432 ~eyDVVIIGSGiAGLvAA~~LAea~G~KVLVLEKG  466 (720)
                      .+|||||||||.+|++||++|++. |++|+|||++
T Consensus         3 ~~~DviIIG~G~aG~~aA~~~~~~-g~~v~lie~~   36 (475)
T PRK06327          3 KQFDVVVIGAGPGGYVAAIRAAQL-GLKVACIEAW   36 (475)
T ss_pred             cceeEEEECCCHHHHHHHHHHHhC-CCeEEEEecc
Confidence            368999999999999999999999 9999999983

>COG2072 TrkA Predicted flavoprotein involved in K+ transport [Inorganic ion transport and metabolism]

Probab=98.34  E-value=3.4e-06  Score=95.33  Aligned_cols=39  Identities=23%  Similarity=0.386  Sum_probs=34.7

Q ss_pred             CCCcccEEEECCcHHHHHHHHHHHhcCCCc-EEEEccCCCC
Q psy14408        430 SGDCFDIIIVGASAAGCVLANRLSEVSSLK-VLLIEAGGDT  469 (720)
Q Consensus       430 ~d~eyDVVIIGSGiAGLvAA~~LAea~G~K-VLVLEKG~~~  469 (720)
                      ....+||||||||.+|+++|++|.++ |.. ++||||+...
T Consensus         5 ~~~~~~v~IIGaG~sGlaaa~~L~~~-g~~~~~i~Ek~~~~   44 (443)
T COG2072           5 VATHTDVAIIGAGQSGLAAAYALKQA-GVPDFVIFEKRDDV   44 (443)
T ss_pred             cCCcccEEEECCCHHHHHHHHHHHHc-CCCcEEEEEccCCc
Confidence            34567999999999999999999999 998 9999998543

>PRK12831 putative oxidoreductase; Provisional

Probab=98.34  E-value=3.6e-06  Score=95.48  Aligned_cols=62  Identities=11%  Similarity=0.249  Sum_probs=45.4

Q ss_pred             CCCeEEEcCeEEEEEEEccCCcEEEEEEEec----------------CCcEEEEEcCcEEEEccCCcchHHHHHH-cCCC
Q psy14408        647 RTNLYVLKRSKVTKVIINDQNVATGVEYVNS----------------KGETVRVTANKEVILTAGAIANAQLLLL-SGIG  709 (720)
Q Consensus       647 ~aGVkIi~gt~VtkIl~e~gGrAtGV~v~dt----------------~G~e~tIkAkK~VVVAAGa~~Sp~LLl~-SGIg  709 (720)
                      +.|++|++++.+++|+.+++|+++||++...                +|.+.+|.++ .||+|.|-.....++.. .|+.
T Consensus       330 ~eGV~i~~~~~~~~i~~~~~g~v~~v~~~~~~~~~~d~~Gr~~~~~~~g~~~~i~~D-~Vi~AiG~~p~~~~~~~~~gl~  408 (464)
T PRK12831        330 EEGVIFDLLTNPVEILGDENGWVKGMKCIKMELGEPDASGRRRPVEIEGSEFVLEVD-TVIMSLGTSPNPLISSTTKGLK  408 (464)
T ss_pred             HcCCEEEecccceEEEecCCCeEEEEEEEEEEecCcCCCCCccceecCCceEEEECC-EEEECCCCCCChhhhcccCCce
Confidence            6799999999999998753678999887521                2445679998 59999997655555543 4553

>PRK15317 alkyl hydroperoxide reductase subunit F; Provisional

Probab=98.33  E-value=2.9e-06  Score=97.26  Aligned_cols=58  Identities=21%  Similarity=0.353  Sum_probs=47.1

Q ss_pred             CCCeEEEcCeEEEEEEEccCCcEEEEEEEec-CCcEEEEEcCcEEEEccCCcchHHHHHHc
Q psy14408        647 RTNLYVLKRSKVTKVIINDQNVATGVEYVNS-KGETVRVTANKEVILTAGAIANAQLLLLS  706 (720)
Q Consensus       647 ~aGVkIi~gt~VtkIl~e~gGrAtGV~v~dt-~G~e~tIkAkK~VVVAAGa~~Sp~LLl~S  706 (720)
                      ..|++|+.++.|++|..+ ++++.+|++.+. +|++.++.++ .|++|.|......+|...
T Consensus       399 ~~gI~i~~~~~v~~i~~~-~g~v~~v~~~~~~~g~~~~i~~D-~v~~~~G~~p~~~~l~~~  457 (517)
T PRK15317        399 LPNVTIITNAQTTEVTGD-GDKVTGLTYKDRTTGEEHHLELE-GVFVQIGLVPNTEWLKGT  457 (517)
T ss_pred             CCCcEEEECcEEEEEEcC-CCcEEEEEEEECCCCcEEEEEcC-EEEEeECCccCchHHhhh
Confidence            469999999999999876 688889988764 4666789998 599999987767776543

>PRK10262 thioredoxin reductase; Provisional

Probab=98.32  E-value=5.2e-06  Score=88.86  Aligned_cols=66  Identities=14%  Similarity=0.194  Sum_probs=46.9

Q ss_pred             HHHHHhcCCCeEEEcCeEEEEEEEccCCcEEEEEEEec--CCcEEEEEcCcEEEEccCCcchHHHHHHcCCC
Q psy14408        640 LTPIAGKRTNLYVLKRSKVTKVIINDQNVATGVEYVNS--KGETVRVTANKEVILTAGAIANAQLLLLSGIG  709 (720)
Q Consensus       640 L~~Aa~e~aGVkIi~gt~VtkIl~e~gGrAtGV~v~dt--~G~e~tIkAkK~VVVAAGa~~Sp~LLl~SGIg  709 (720)
                      +.+.+ ++.|+++++++.|++|..+ ++++.+|++.+.  .+.+.++.++ .||+|+|......++ +.+++
T Consensus       191 ~~~~l-~~~gV~i~~~~~v~~v~~~-~~~~~~v~~~~~~~~~~~~~i~~D-~vv~a~G~~p~~~l~-~~~l~  258 (321)
T PRK10262        191 LMDKV-ENGNIILHTNRTLEEVTGD-QMGVTGVRLRDTQNSDNIESLDVA-GLFVAIGHSPNTAIF-EGQLE  258 (321)
T ss_pred             HHhhc-cCCCeEEEeCCEEEEEEcC-CccEEEEEEEEcCCCCeEEEEECC-EEEEEeCCccChhHh-hcccc
Confidence            44444 4789999999999999765 556778887753  2344579998 599999976665544 44554

>PRK08294 phenol 2-monooxygenase; Provisional

Probab=98.31  E-value=1.3e-05  Score=94.33  Aligned_cols=36  Identities=33%  Similarity=0.491  Sum_probs=33.0

Q ss_pred             CCcccEEEECCcHHHHHHHHHHHh-cCCCcEEEEccCC
Q psy14408        431 GDCFDIIIVGASAAGCVLANRLSE-VSSLKVLLIEAGG  467 (720)
Q Consensus       431 d~eyDVVIIGSGiAGLvAA~~LAe-a~G~KVLVLEKG~  467 (720)
                      ..++||||||||++||++|+.||+ . |++|+||||..
T Consensus        30 ~~~~dVlIVGAGPaGL~lA~~Lar~~-Gi~v~IiE~~~   66 (634)
T PRK08294         30 PDEVDVLIVGCGPAGLTLAAQLSAFP-DITTRIVERKP   66 (634)
T ss_pred             CCCCCEEEECCCHHHHHHHHHHhcCC-CCcEEEEEcCC
Confidence            346899999999999999999999 7 99999999874

>PRK12769 putative oxidoreductase Fe-S binding subunit; Reviewed

Probab=98.30  E-value=4.2e-06  Score=98.68  Aligned_cols=38  Identities=21%  Similarity=0.216  Sum_probs=34.2

Q ss_pred             cccEEEECCcHHHHHHHHHHHhcCCCcEEEEccCCCCCC
Q psy14408        433 CFDIIIVGASAAGCVLANRLSEVSSLKVLLIEAGGDTPI  471 (720)
Q Consensus       433 eyDVVIIGSGiAGLvAA~~LAea~G~KVLVLEKG~~~~~  471 (720)
                      ..+|+|||||.+||+||..|++. |++|+|+|+....++
T Consensus       327 ~~~VaIIGaGpAGLsaA~~L~~~-G~~V~V~E~~~~~GG  364 (654)
T PRK12769        327 DKRVAIIGAGPAGLACADVLARN-GVAVTVYDRHPEIGG  364 (654)
T ss_pred             CCEEEEECCCHHHHHHHHHHHHC-CCeEEEEecCCCCCc
Confidence            45999999999999999999999 999999999866543

>COG1232 HemY Protoporphyrinogen oxidase [Coenzyme metabolism]

Probab=98.29  E-value=7.9e-06  Score=92.26  Aligned_cols=37  Identities=32%  Similarity=0.383  Sum_probs=33.4

Q ss_pred             cEEEECCcHHHHHHHHHHHhcCC--CcEEEEccCCCCCCC
Q psy14408        435 DIIIVGASAAGCVLANRLSEVSS--LKVLLIEAGGDTPIH  472 (720)
Q Consensus       435 DVVIIGSGiAGLvAA~~LAea~G--~KVLVLEKG~~~~~s  472 (720)
                      -|+|||||++||+||++|+++ |  .+|+|+||+...++-
T Consensus         2 ~i~IiG~GiaGLsaAy~L~k~-~p~~~i~lfE~~~r~GG~   40 (444)
T COG1232           2 KIAIIGGGIAGLSAAYRLQKA-GPDVEVTLFEADDRVGGL   40 (444)
T ss_pred             eEEEECCcHHHHHHHHHHHHh-CCCCcEEEEecCCCCCce
Confidence            489999999999999999999 8  999999998776544

>PRK12810 gltD glutamate synthase subunit beta; Reviewed

Probab=98.28  E-value=4.6e-06  Score=94.59  Aligned_cols=61  Identities=21%  Similarity=0.224  Sum_probs=46.0

Q ss_pred             CCCeEEEcCeEEEEEEEccCCcEEEEEEEec----------CCcEEEEEcCcEEEEccCCcch-HHHHHHcCCC
Q psy14408        647 RTNLYVLKRSKVTKVIINDQNVATGVEYVNS----------KGETVRVTANKEVILTAGAIAN-AQLLLLSGIG  709 (720)
Q Consensus       647 ~aGVkIi~gt~VtkIl~e~gGrAtGV~v~dt----------~G~e~tIkAkK~VVVAAGa~~S-p~LLl~SGIg  709 (720)
                      +.|+++++++.+++|..+ +|+++||++...          .|.+.+|.++ .||+|+|.... ..++...|+.
T Consensus       341 ~~GV~i~~~~~~~~i~~~-~g~v~~V~~~~~~~~~g~~~~~~g~~~~i~~D-~VI~A~G~~p~~~~l~~~~gl~  412 (471)
T PRK12810        341 EEGVEREFNVQTKEFEGE-NGKVTGVKVVRTELGEGDFEPVEGSEFVLPAD-LVLLAMGFTGPEAGLLAQFGVE  412 (471)
T ss_pred             HcCCeEEeccCceEEEcc-CCEEEEEEEEEEEecCCCccccCCceEEEECC-EEEECcCcCCCchhhccccCcc
Confidence            679999999999999866 788999886521          2455789998 59999995443 3466666653

>PF13450 NAD_binding_8: NAD(P)-binding Rossmann-like domain; PDB: 3KA7_A 1V0J_D 3INR_B 3KYB_B 3GF4_A 2BI8_A 3INT_B 1WAM_A 2BI7_A 3MJ4_G

Probab=98.28  E-value=7.5e-07  Score=75.36  Aligned_cols=33  Identities=24%  Similarity=0.309  Sum_probs=29.5

Q ss_pred             EECCcHHHHHHHHHHHhcCCCcEEEEccCCCCCC
Q psy14408        438 IVGASAAGCVLANRLSEVSSLKVLLIEAGGDTPI  471 (720)
Q Consensus       438 IIGSGiAGLvAA~~LAea~G~KVLVLEKG~~~~~  471 (720)
                      |||||++||++|++|+++ |++|+|+||....++
T Consensus         1 IiGaG~sGl~aA~~L~~~-g~~v~v~E~~~~~GG   33 (68)
T PF13450_consen    1 IIGAGISGLAAAYYLAKA-GYRVTVFEKNDRLGG   33 (68)
T ss_dssp             EES-SHHHHHHHHHHHHT-TSEEEEEESSSSSSG
T ss_pred             CEeeCHHHHHHHHHHHHC-CCcEEEEecCcccCc
Confidence            899999999999999999 999999999976643

...

>PLN02529 lysine-specific histone demethylase 1

Probab=98.26  E-value=1.4e-05  Score=95.36  Aligned_cols=41  Identities=32%  Similarity=0.388  Sum_probs=36.5

Q ss_pred             CCcccEEEECCcHHHHHHHHHHHhcCCCcEEEEccCCCCCCC
Q psy14408        431 GDCFDIIIVGASAAGCVLANRLSEVSSLKVLLIEAGGDTPIH  472 (720)
Q Consensus       431 d~eyDVVIIGSGiAGLvAA~~LAea~G~KVLVLEKG~~~~~s  472 (720)
                      ....||||||||++||+||..|+++ |++|+|||+....++.
T Consensus       158 ~~~~~v~viGaG~aGl~aA~~l~~~-g~~v~v~E~~~~~GG~  198 (738)
T PLN02529        158 GTEGSVIIVGAGLAGLAAARQLLSF-GFKVVVLEGRNRPGGR  198 (738)
T ss_pred             cCCCCEEEECcCHHHHHHHHHHHHc-CCcEEEEecCccCcCc
Confidence            3457999999999999999999999 9999999998776554

>COG0445 GidA Flavin-dependent tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA [Cell cycle control, cell division, chromosome partitioning]

Probab=98.24  E-value=2.9e-06  Score=96.42  Aligned_cols=56  Identities=23%  Similarity=0.376  Sum_probs=40.8

Q ss_pred             HHHHHHHhcCCCeEEEcCeEEEEEEEccCCcEEEEEEEecCCcEEEEEcCcEEEEccCCcch
Q psy14408        638 AYLTPIAGKRTNLYVLKRSKVTKVIINDQNVATGVEYVNSKGETVRVTANKEVILTAGAIAN  699 (720)
Q Consensus       638 a~L~~Aa~e~aGVkIi~gt~VtkIl~e~gGrAtGV~v~dt~G~e~tIkAkK~VVVAAGa~~S  699 (720)
                      .+++..+....|+.++.+ .|++|+++++.+|+||.+.+  |.  .+.|+ .|||++|+|-.
T Consensus       104 ~~mk~~le~~~NL~l~q~-~v~dli~e~~~~v~GV~t~~--G~--~~~a~-aVVlTTGTFL~  159 (621)
T COG0445         104 RAMKNELENQPNLHLLQG-EVEDLIVEEGQRVVGVVTAD--GP--EFHAK-AVVLTTGTFLR  159 (621)
T ss_pred             HHHHHHHhcCCCceehHh-hhHHHhhcCCCeEEEEEeCC--CC--eeecC-EEEEeeccccc
Confidence            455555524568999865 68888887234699999877  74  78997 69999998744

>COG2509 Uncharacterized FAD-dependent dehydrogenases [General function prediction only]

Probab=98.24  E-value=2.6e-05  Score=87.21  Aligned_cols=54  Identities=20%  Similarity=0.292  Sum_probs=42.9

Q ss_pred             HHHHHHhcCCCeEEEcCeEEEEEEEccCCcEEEEEEEecCCcEEEEEcCcEEEEccCCcch
Q psy14408        639 YLTPIAGKRTNLYVLKRSKVTKVIINDQNVATGVEYVNSKGETVRVTANKEVILTAGAIAN  699 (720)
Q Consensus       639 ~L~~Aa~e~aGVkIi~gt~VtkIl~e~gGrAtGV~v~dt~G~e~tIkAkK~VVVAAGa~~S  699 (720)
                      -+++.+ +..|++|+++++|++|+++ ++.+.+|++.+  |+  +|.++ .||+|-|--+.
T Consensus       178 ni~~~l-~~~G~ei~f~t~VeDi~~~-~~~~~~v~~~~--g~--~i~~~-~vvlA~Grsg~  231 (486)
T COG2509         178 NIREYL-ESLGGEIRFNTEVEDIEIE-DNEVLGVKLTK--GE--EIEAD-YVVLAPGRSGR  231 (486)
T ss_pred             HHHHHH-HhcCcEEEeeeEEEEEEec-CCceEEEEccC--Cc--EEecC-EEEEccCcchH
Confidence            344444 5889999999999999998 77788888876  64  78998 59999996443

>TIGR03197 MnmC_Cterm tRNA U-34 5-methylaminomethyl-2-thiouridine biosynthesis protein MnmC, C-terminal domain

Probab=98.24  E-value=5.8e-06  Score=90.56  Aligned_cols=57  Identities=23%  Similarity=0.176  Sum_probs=39.4

Q ss_pred             HHHHHHHhcCCCeEEEcCeEEEEEEEccCCcEEEEEEEecCCcEEEEEcCcEEEEccCCcchHHHHH
Q psy14408        638 AYLTPIAGKRTNLYVLKRSKVTKVIINDQNVATGVEYVNSKGETVRVTANKEVILTAGAIANAQLLL  704 (720)
Q Consensus       638 a~L~~Aa~e~aGVkIi~gt~VtkIl~e~gGrAtGV~v~dt~G~e~tIkAkK~VVVAAGa~~Sp~LLl  704 (720)
                      ..|.+++ ++ |++|+++++|++|..+ +++ .+|++.  +|.  .++|+ +||+|+|+ |+..++.
T Consensus       139 ~~l~~~~-~~-G~~i~~~~~V~~i~~~-~~~-~~v~t~--~g~--~~~a~-~vV~a~G~-~~~~l~~  195 (381)
T TIGR03197       139 RALLAHA-GI-RLTLHFNTEITSLERD-GEG-WQLLDA--NGE--VIAAS-VVVLANGA-QAGQLAQ  195 (381)
T ss_pred             HHHHhcc-CC-CcEEEeCCEEEEEEEc-CCe-EEEEeC--CCC--EEEcC-EEEEcCCc-ccccccc
Confidence            3444555 46 9999999999999887 554 344433  353  48897 59999997 5656554

In Escherichia coli, the protein previously designated YfcK is now identified as the bifunctional enzyme MnmC. It acts, following the action of the heterotetramer of GidA and MnmE, in the modification of U-34 of certain tRNA to 5-methylaminomethyl-2-thiouridine (mnm5s2U). In other bacterial, the corresponding proteins are usually but always found as a single polypeptide chain, but occasionally as the product of tandem genes. This model represents the C-terminal region of the multifunctional protein.

>PRK11749 dihydropyrimidine dehydrogenase subunit A; Provisional

Probab=98.20  E-value=5.9e-06  Score=93.19  Aligned_cols=37  Identities=27%  Similarity=0.390  Sum_probs=33.7

Q ss_pred             cccEEEECCcHHHHHHHHHHHhcCCCcEEEEccCCCCC
Q psy14408        433 CFDIIIVGASAAGCVLANRLSEVSSLKVLLIEAGGDTP  470 (720)
Q Consensus       433 eyDVVIIGSGiAGLvAA~~LAea~G~KVLVLEKG~~~~  470 (720)
                      ..+|+|||||++|+++|..|++. |++|+|+|+....+
T Consensus       140 ~~~VvIIGgGpaGl~aA~~l~~~-g~~V~lie~~~~~g  176 (457)
T PRK11749        140 GKKVAVIGAGPAGLTAAHRLARK-GYDVTIFEARDKAG  176 (457)
T ss_pred             CCcEEEECCCHHHHHHHHHHHhC-CCeEEEEccCCCCC
Confidence            45999999999999999999999 99999999986653

>KOG1335|consensus

Probab=98.18  E-value=1.1e-05  Score=88.30  Aligned_cols=54  Identities=15%  Similarity=0.284  Sum_probs=41.4

Q ss_pred             HHHHHhcCCCeEEEcCeEEEEEEEccCCcEEEEEEEec-CCcEEEEEcCcEEEEccCC
Q psy14408        640 LTPIAGKRTNLYVLKRSKVTKVIINDQNVATGVEYVNS-KGETVRVTANKEVILTAGA  696 (720)
Q Consensus       640 L~~Aa~e~aGVkIi~gt~VtkIl~e~gGrAtGV~v~dt-~G~e~tIkAkK~VVVAAGa  696 (720)
                      +.+.+ ++.|++|+++++|+.+..+++| ..-|++++. +|++.+++|+ .+.||.|-
T Consensus       258 ~qr~L-~kQgikF~l~tkv~~a~~~~dg-~v~i~ve~ak~~k~~tle~D-vlLVsiGR  312 (506)
T KOG1335|consen  258 FQRVL-QKQGIKFKLGTKVTSATRNGDG-PVEIEVENAKTGKKETLECD-VLLVSIGR  312 (506)
T ss_pred             HHHHH-HhcCceeEeccEEEEeeccCCC-ceEEEEEecCCCceeEEEee-EEEEEccC
Confidence            44444 4789999999999999988444 345666665 5777899998 68999994

>PRK12775 putative trifunctional 2-polyprenylphenol hydroxylase/glutamate synthase subunit beta/ferritin domain-containing protein; Provisional

Probab=98.17  E-value=1.1e-05  Score=99.59  Aligned_cols=38  Identities=24%  Similarity=0.150  Sum_probs=34.3

Q ss_pred             cccEEEECCcHHHHHHHHHHHhcCCCcEEEEccCCCCCC
Q psy14408        433 CFDIIIVGASAAGCVLANRLSEVSSLKVLLIEAGGDTPI  471 (720)
Q Consensus       433 eyDVVIIGSGiAGLvAA~~LAea~G~KVLVLEKG~~~~~  471 (720)
                      ..+|+|||||.+||+||.+|+++ |++|+|+|++...++
T Consensus       430 ~~kVaIIG~GPAGLsaA~~La~~-G~~VtV~E~~~~~GG  467 (1006)
T PRK12775        430 LGKVAICGSGPAGLAAAADLVKY-GVDVTVYEALHVVGG  467 (1006)
T ss_pred             CCEEEEECCCHHHHHHHHHHHHc-CCcEEEEecCCCCcc
Confidence            45999999999999999999999 999999999866543

>KOG1399|consensus

Probab=98.16  E-value=7.8e-06  Score=92.49  Aligned_cols=36  Identities=28%  Similarity=0.403  Sum_probs=33.3

Q ss_pred             cccEEEECCcHHHHHHHHHHHhcCCCcEEEEccCCCC
Q psy14408        433 CFDIIIVGASAAGCVLANRLSEVSSLKVLLIEAGGDT  469 (720)
Q Consensus       433 eyDVVIIGSGiAGLvAA~~LAea~G~KVLVLEKG~~~  469 (720)
                      .-+|+|||||++||++|+.|.++ |+.|+|+||.+..
T Consensus         6 ~~~vaIIGAG~sGL~~ar~l~~~-g~~v~vfEr~~~i   41 (448)
T KOG1399|consen    6 SKDVAVIGAGPAGLAAARELLRE-GHEVVVFERTDDI   41 (448)
T ss_pred             CCceEEECcchHHHHHHHHHHHC-CCCceEEEecCCc
Confidence            34999999999999999999999 9999999999655

>PRK09564 coenzyme A disulfide reductase; Reviewed

Probab=98.15  E-value=3.9e-05  Score=85.70  Aligned_cols=63  Identities=17%  Similarity=0.209  Sum_probs=45.8

Q ss_pred             HHHHHHHhcCCCeEEEcCeEEEEEEEccCCcEEEEEEEecCCcEEEEEcCcEEEEccCCcchHHHHHHcCCC
Q psy14408        638 AYLTPIAGKRTNLYVLKRSKVTKVIINDQNVATGVEYVNSKGETVRVTANKEVILTAGAIANAQLLLLSGIG  709 (720)
Q Consensus       638 a~L~~Aa~e~aGVkIi~gt~VtkIl~e~gGrAtGV~v~dt~G~e~tIkAkK~VVVAAGa~~Sp~LLl~SGIg  709 (720)
                      .++.+.+ ++.|++|+.+++|++|..  ++++.++..   +++  ++.++ .||+|+|......+|..+|+.
T Consensus       195 ~~l~~~l-~~~gI~v~~~~~v~~i~~--~~~~~~v~~---~~~--~i~~d-~vi~a~G~~p~~~~l~~~gl~  257 (444)
T PRK09564        195 DVMEEEL-RENGVELHLNEFVKSLIG--EDKVEGVVT---DKG--EYEAD-VVIVATGVKPNTEFLEDTGLK  257 (444)
T ss_pred             HHHHHHH-HHCCCEEEcCCEEEEEec--CCcEEEEEe---CCC--EEEcC-EEEECcCCCcCHHHHHhcCcc
Confidence            3455555 578999999999999963  344555543   233  58998 599999987677788888875

>TIGR01438 TGR thioredoxin and glutathione reductase selenoprotein

Probab=98.14  E-value=1.1e-05  Score=92.15  Aligned_cols=33  Identities=24%  Similarity=0.509  Sum_probs=31.5

Q ss_pred             cccEEEECCcHHHHHHHHHHHhcCCCcEEEEccC
Q psy14408        433 CFDIIIVGASAAGCVLANRLSEVSSLKVLLIEAG  466 (720)
Q Consensus       433 eyDVVIIGSGiAGLvAA~~LAea~G~KVLVLEKG  466 (720)
                      +|||||||||.+|+.||++|++. |++|+|||+.
T Consensus         2 ~yDvvVIG~G~aG~~aA~~aa~~-G~~v~lie~~   34 (484)
T TIGR01438         2 DYDLIVIGGGSGGLAAAKEAADY-GAKVMLLDFV   34 (484)
T ss_pred             ccCEEEECCCHHHHHHHHHHHHC-CCeEEEEecc
Confidence            48999999999999999999999 9999999985

This homodimeric, FAD-containing member of the pyridine nucleotide disulfide oxidoreductase family contains a C-terminal motif Cys-SeCys-Gly, where SeCys is selenocysteine encoded by TGA (in some sequence reports interpreted as a stop codon). In some members of this subfamily, Cys-SeCys-Gly is replaced by Cys-Cys-Gly. The reach of the selenium atom at the C-term arm of the protein is proposed to allow broad substrate specificity.

>PRK12779 putative bifunctional glutamate synthase subunit beta/2-polyprenylphenol hydroxylase; Provisional

Probab=98.14  E-value=1.4e-05  Score=98.07  Aligned_cols=39  Identities=26%  Similarity=0.161  Sum_probs=35.0

Q ss_pred             cccEEEECCcHHHHHHHHHHHhcCCCcEEEEccCCCCCCC
Q psy14408        433 CFDIIIVGASAAGCVLANRLSEVSSLKVLLIEAGGDTPIH  472 (720)
Q Consensus       433 eyDVVIIGSGiAGLvAA~~LAea~G~KVLVLEKG~~~~~s  472 (720)
                      ..+|+|||||++||+||.+|+++ |++|+|+||....++-
T Consensus       306 gkkVaVIGsGPAGLsaA~~Lar~-G~~VtVfE~~~~~GG~  344 (944)
T PRK12779        306 KPPIAVVGSGPSGLINAYLLAVE-GFPVTVFEAFHDLGGV  344 (944)
T ss_pred             CCeEEEECCCHHHHHHHHHHHHC-CCeEEEEeeCCCCCce
Confidence            45899999999999999999999 9999999998766543

>KOG0029|consensus

Probab=98.13  E-value=2.3e-06  Score=98.04  Aligned_cols=42  Identities=29%  Similarity=0.436  Sum_probs=37.5

Q ss_pred             CCCcccEEEECCcHHHHHHHHHHHhcCCCcEEEEccCCCCCCC
Q psy14408        430 SGDCFDIIIVGASAAGCVLANRLSEVSSLKVLLIEAGGDTPIH  472 (720)
Q Consensus       430 ~d~eyDVVIIGSGiAGLvAA~~LAea~G~KVLVLEKG~~~~~s  472 (720)
                      .....+|||||||++||+||++|.+. |++|+|||+.++.++.
T Consensus        12 ~~~~~~VIVIGAGiaGLsAArqL~~~-G~~V~VLEARdRvGGR   53 (501)
T KOG0029|consen   12 AGKKKKVIVIGAGLAGLSAARQLQDF-GFDVLVLEARDRVGGR   53 (501)
T ss_pred             ccCCCcEEEECCcHHHHHHHHHHHHc-CCceEEEeccCCcCce
Confidence            33456999999999999999999999 9999999999887665

>COG1231 Monoamine oxidase [Amino acid transport and metabolism]

Probab=98.13  E-value=2.5e-05  Score=87.53  Aligned_cols=41  Identities=32%  Similarity=0.361  Sum_probs=36.8

Q ss_pred             CCcccEEEECCcHHHHHHHHHHHhcCCCcEEEEccCCCCCCC
Q psy14408        431 GDCFDIIIVGASAAGCVLANRLSEVSSLKVLLIEAGGDTPIH  472 (720)
Q Consensus       431 d~eyDVVIIGSGiAGLvAA~~LAea~G~KVLVLEKG~~~~~s  472 (720)
                      +...||||||+|.+||++|+.|.++ |++|+|||+.+++++.
T Consensus         5 ~~~~~viivGaGlaGL~AA~eL~ka-G~~v~ilEar~r~GGR   45 (450)
T COG1231           5 PKTADVIIVGAGLAGLSAAYELKKA-GYQVQILEARDRVGGR   45 (450)
T ss_pred             CCCCcEEEECCchHHHHHHHHHhhc-CcEEEEEeccCCcCce
Confidence            4457999999999999999999999 9999999998877554

>PRK09754 phenylpropionate dioxygenase ferredoxin reductase subunit; Provisional

Probab=98.12  E-value=9.4e-05  Score=81.88  Aligned_cols=64  Identities=22%  Similarity=0.296  Sum_probs=44.5

Q ss_pred             HHHHHHHhcCCCeEEEcCeEEEEEEEccCCcEEEEEEEecCCcEEEEEcCcEEEEccCCcchHHHHHHcCCCC
Q psy14408        638 AYLTPIAGKRTNLYVLKRSKVTKVIINDQNVATGVEYVNSKGETVRVTANKEVILTAGAIANAQLLLLSGIGP  710 (720)
Q Consensus       638 a~L~~Aa~e~aGVkIi~gt~VtkIl~e~gGrAtGV~v~dt~G~e~tIkAkK~VVVAAGa~~Sp~LLl~SGIgp  710 (720)
                      .++...+ ++.|++|++++.|++|..+  +. ..|++.  +|+  ++.++ .||+|+|......|+..+|+..
T Consensus       190 ~~l~~~l-~~~GV~i~~~~~V~~i~~~--~~-~~v~l~--~g~--~i~aD-~Vv~a~G~~pn~~l~~~~gl~~  253 (396)
T PRK09754        190 RYLLQRH-QQAGVRILLNNAIEHVVDG--EK-VELTLQ--SGE--TLQAD-VVIYGIGISANDQLAREANLDT  253 (396)
T ss_pred             HHHHHHH-HHCCCEEEeCCeeEEEEcC--CE-EEEEEC--CCC--EEECC-EEEECCCCChhhHHHHhcCCCc
Confidence            3444444 4789999999999999642  22 234433  354  68898 5999999877777777788753

>PF00743 FMO-like: Flavin-binding monooxygenase-like; InterPro: IPR020946 Flavin-containing monooxygenases (FMOs) constitute a family of xenobiotic-metabolising enzymes []

Probab=98.12  E-value=1.8e-05  Score=91.48  Aligned_cols=34  Identities=29%  Similarity=0.443  Sum_probs=28.9

Q ss_pred             cEEEECCcHHHHHHHHHHHhcCCCcEEEEccCCCC
Q psy14408        435 DIIIVGASAAGCVLANRLSEVSSLKVLLIEAGGDT  469 (720)
Q Consensus       435 DVVIIGSGiAGLvAA~~LAea~G~KVLVLEKG~~~  469 (720)
                      .|+|||||++||++|+.|.++ |+.|+++||....
T Consensus         3 rVaVIGaG~sGL~a~k~l~e~-g~~~~~fE~~~~i   36 (531)
T PF00743_consen    3 RVAVIGAGPSGLAAAKNLLEE-GLEVTCFEKSDDI   36 (531)
T ss_dssp             EEEEE--SHHHHHHHHHHHHT-T-EEEEEESSSSS
T ss_pred             EEEEECccHHHHHHHHHHHHC-CCCCeEEecCCCC
Confidence            699999999999999999999 9999999998655

Using an NADPH cofactor and FAD prosthetic group, these microsomal proteins catalyse the oxygenation of nucleophilic nitrogen, sulphur, phosphorous and selenium atoms in a range of structurally diverse compounds. FMOs have been implicated in the metabolism of a number of pharmaceuticals, pesticides and toxicants. In man, lack of hepatic FMO-catalysed trimethylamine metabolism results in trimethylaminuria (fish odour syndrome). Five mammalian forms of FMO are now known and have been designated FMO1-FMO5 [, , , , ]. This is a recent nomenclature based on comparison of amino acid sequences, and has been introduced in an attempt to eliminate confusion inherent in multiple, laboratory-specific designations and tissue-based classifications []. Following the determination of the complete nucleotide sequence of Saccharomyces cerevisiae (Baker's yeast) [], a novel gene was found to encode a protein with similarity to mammalian monooygenases.; GO: 0004499 flavin-containing monooxygenase activity, 0050660 flavin adenine dinucleotide binding, 0050661 NADP binding, 0055114 oxidation-reduction process; PDB: 2GVC_E 1VQW_B 2GV8_B 2XVI_B 2XVH_B 2XLS_A 2XLR_A 2XLU_D 2XLP_B 2XVE_A ....

>PRK12778 putative bifunctional 2-polyprenylphenol hydroxylase/glutamate synthase subunit beta; Provisional

Probab=98.10  E-value=1.6e-05  Score=95.20  Aligned_cols=38  Identities=21%  Similarity=0.318  Sum_probs=33.8

Q ss_pred             CcccEEEECCcHHHHHHHHHHHhcCCCcEEEEccCCCCC
Q psy14408        432 DCFDIIIVGASAAGCVLANRLSEVSSLKVLLIEAGGDTP  470 (720)
Q Consensus       432 ~eyDVVIIGSGiAGLvAA~~LAea~G~KVLVLEKG~~~~  470 (720)
                      ...||+|||||.+||+||.+|+++ |++|+|+|+....+
T Consensus       430 ~~~~V~IIGaGpAGl~aA~~l~~~-G~~V~v~e~~~~~G  467 (752)
T PRK12778        430 NGKKVAVIGSGPAGLSFAGDLAKR-GYDVTVFEALHEIG  467 (752)
T ss_pred             CCCEEEEECcCHHHHHHHHHHHHC-CCeEEEEecCCCCC
Confidence            346999999999999999999999 99999999975543

>TIGR03219 salicylate_mono salicylate 1-monooxygenase

Probab=98.09  E-value=7.6e-05  Score=82.71  Aligned_cols=33  Identities=39%  Similarity=0.509  Sum_probs=30.3

Q ss_pred             cEEEECCcHHHHHHHHHHHhcCC-CcEEEEccCCC
Q psy14408        435 DIIIVGASAAGCVLANRLSEVSS-LKVLLIEAGGD  468 (720)
Q Consensus       435 DVVIIGSGiAGLvAA~~LAea~G-~KVLVLEKG~~  468 (720)
                      .|+|||||++||++|+.|+++ | ++|+|+||...
T Consensus         2 ~V~IiGgGiaGla~A~~L~~~-g~~~v~v~Er~~~   35 (414)
T TIGR03219         2 RVAIIGGGIAGVALALNLCKH-SHLNVQLFEAAPA   35 (414)
T ss_pred             eEEEECCCHHHHHHHHHHHhc-CCCCEEEEecCCc
Confidence            699999999999999999999 8 59999999743

Members of this protein family are salicylate 1-monooxygenase, also called salicylate hydroxylase. This enzyme converts salicylate to catechol, which is a common intermediate in the degradation of a number of aromatic compounds (phenol, toluene, benzoate, etc.). The gene for this protein may occur in catechol degradation genes, such as those of the meta-cleavage pathway.

>KOG2614|consensus

Probab=98.09  E-value=2.2e-05  Score=86.90  Aligned_cols=33  Identities=24%  Similarity=0.392  Sum_probs=31.1

Q ss_pred             ccEEEECCcHHHHHHHHHHHhcCCCcEEEEccCC
Q psy14408        434 FDIIIVGASAAGCVLANRLSEVSSLKVLLIEAGG  467 (720)
Q Consensus       434 yDVVIIGSGiAGLvAA~~LAea~G~KVLVLEKG~  467 (720)
                      -+|||||||++||++|..|+++ |++|+|+|+..
T Consensus         3 ~~VvIvGgGI~Gla~A~~l~r~-G~~v~VlE~~e   35 (420)
T KOG2614|consen    3 PKVVIVGGGIVGLATALALHRK-GIDVVVLESRE   35 (420)
T ss_pred             CcEEEECCcHHHHHHHHHHHHc-CCeEEEEeecc
Confidence            4899999999999999999999 99999999964

>TIGR03315 Se_ygfK putative selenate reductase, YgfK subunit

Probab=98.09  E-value=3.7e-05  Score=94.40  Aligned_cols=38  Identities=18%  Similarity=0.217  Sum_probs=34.4

Q ss_pred             cccEEEECCcHHHHHHHHHHHhcCCCcEEEEccCCCCCC
Q psy14408        433 CFDIIIVGASAAGCVLANRLSEVSSLKVLLIEAGGDTPI  471 (720)
Q Consensus       433 eyDVVIIGSGiAGLvAA~~LAea~G~KVLVLEKG~~~~~  471 (720)
                      ..||+|||||+||++||++|++. |++|+|+|+....++
T Consensus       537 ~kkVaIIGGGPAGLSAA~~LAr~-G~~VTV~Ek~~~lGG  574 (1012)
T TIGR03315       537 AHKVAVIGAGPAGLSAGYFLARA-GHPVTVFEKKEKPGG  574 (1012)
T ss_pred             CCcEEEECCCHHHHHHHHHHHHC-CCeEEEEecccccCc
Confidence            46999999999999999999999 999999999866543

Members of this protein family are YgfK, predicted to be one subunit of a three-subunit, molybdopterin-containing selenate reductase. This enzyme is found, typically, in genomic regions associated with xanthine dehydrogenase homologs predicted to belong to the selenium-dependent molybdenum hydroxylases (SDMH). Therefore, the selenate reductase is suggested to play a role in furnishing selenide for SelD, the selenophosphate synthase.

>PLN02268 probable polyamine oxidase

Probab=98.07  E-value=4e-06  Score=93.29  Aligned_cols=37  Identities=30%  Similarity=0.449  Sum_probs=34.8

Q ss_pred             cEEEECCcHHHHHHHHHHHhcCCCcEEEEccCCCCCCC
Q psy14408        435 DIIIVGASAAGCVLANRLSEVSSLKVLLIEAGGDTPIH  472 (720)
Q Consensus       435 DVVIIGSGiAGLvAA~~LAea~G~KVLVLEKG~~~~~s  472 (720)
                      +|||||||++||+||++|.++ |++|+||||.++.++.
T Consensus         2 ~VvVIGaGisGL~aA~~L~~~-g~~v~vlEa~~r~GGr   38 (435)
T PLN02268          2 SVIVIGGGIAGIAAARALHDA-SFKVTLLESRDRIGGR   38 (435)
T ss_pred             CEEEECCCHHHHHHHHHHHhC-CCeEEEEeCCCCCCce
Confidence            799999999999999999999 9999999999888665

>PRK09897 hypothetical protein; Provisional

Probab=98.06  E-value=6.7e-05  Score=86.85  Aligned_cols=35  Identities=26%  Similarity=0.374  Sum_probs=30.3

Q ss_pred             cEEEECCcHHHHHHHHHHHhc-CCCcEEEEccCCCC
Q psy14408        435 DIIIVGASAAGCVLANRLSEV-SSLKVLLIEAGGDT  469 (720)
Q Consensus       435 DVVIIGSGiAGLvAA~~LAea-~G~KVLVLEKG~~~  469 (720)
                      +|+|||||.+|+.+|.+|++. ..++|+|+|++...
T Consensus         3 ~IAIIGgGp~Gl~~a~~L~~~~~~l~V~lfEp~~~~   38 (534)
T PRK09897          3 KIAIVGAGPTGIYTFFSLLQQQTPLSISIFEQADEA   38 (534)
T ss_pred             eEEEECCcHHHHHHHHHHHhcCCCCcEEEEecCCCC
Confidence            899999999999999999985 13589999997544

>TIGR01816 sdhA_forward succinate dehydrogenase, flavoprotein subunit, E

Probab=98.06  E-value=3e-05  Score=90.14  Aligned_cols=59  Identities=17%  Similarity=0.210  Sum_probs=48.1

Q ss_pred             HHHHHHHhcCCCeEEEcCeEEEEEEEccCCcEEEEEEEec-CCcEEEEEcCcEEEEccCCcch
Q psy14408        638 AYLTPIAGKRTNLYVLKRSKVTKVIINDQNVATGVEYVNS-KGETVRVTANKEVILTAGAIAN  699 (720)
Q Consensus       638 a~L~~Aa~e~aGVkIi~gt~VtkIl~e~gGrAtGV~v~dt-~G~e~tIkAkK~VVVAAGa~~S  699 (720)
                      ..|.+.+ ++.|++|++++.|++|+.+ +|+|.||...+. +|+...|+|+ .||||||++..
T Consensus       123 ~~L~~~~-~~~gi~i~~~~~~~~Li~~-~g~v~Ga~~~~~~~g~~~~i~Ak-aVILATGG~~~  182 (565)
T TIGR01816       123 HTLYQQN-LKADTSFFNEYFALDLLME-DGECRGVIAYCLETGEIHRFRAK-AVVLATGGYGR  182 (565)
T ss_pred             HHHHHHH-HhCCCEEEeccEEEEEEee-CCEEEEEEEEEcCCCcEEEEEeC-eEEECCCCccc
Confidence            3444544 4789999999999999998 899999998654 5777789996 79999999864

coli/mitochondrial subgroup. Succinate dehydrogenase and fumarate reductase are homologous enzymes reversible in principle but favored under different circumstances. This model represents a narrowly defined clade of the succinate dehydrogenase flavoprotein subunit as found in mitochondria, in Rickettsia, in E. coli and other Proteobacteria, and in a few other lineages. However, this model excludes all known fumarate reductases. It also excludes putative succinate dehydrogenases that appear to diverged before the split between E. coli succinate dehydrogenase and fumarate reductase.

>PRK11883 protoporphyrinogen oxidase; Reviewed

Probab=98.03  E-value=4.3e-06  Score=92.66  Aligned_cols=37  Identities=24%  Similarity=0.333  Sum_probs=33.7

Q ss_pred             cEEEECCcHHHHHHHHHHHhcCC--CcEEEEccCCCCCCC
Q psy14408        435 DIIIVGASAAGCVLANRLSEVSS--LKVLLIEAGGDTPIH  472 (720)
Q Consensus       435 DVVIIGSGiAGLvAA~~LAea~G--~KVLVLEKG~~~~~s  472 (720)
                      +|||||||++||+||+.|+++ |  ++|+||||....++.
T Consensus         2 ~v~IVGaGiaGL~aA~~L~~~-G~~~~V~vlEa~~~~GGr   40 (451)
T PRK11883          2 KVAIIGGGITGLSAAYRLHKK-GPDADITLLEASDRLGGK   40 (451)
T ss_pred             eEEEECCCHHHHHHHHHHHHh-CCCCCEEEEEcCCCCcce
Confidence            699999999999999999998 7  899999998877554

>PRK08010 pyridine nucleotide-disulfide oxidoreductase; Provisional

Probab=98.02  E-value=4.4e-06  Score=93.53  Aligned_cols=35  Identities=31%  Similarity=0.501  Sum_probs=33.0

Q ss_pred             CcccEEEECCcHHHHHHHHHHHhcCCCcEEEEccCC
Q psy14408        432 DCFDIIIVGASAAGCVLANRLSEVSSLKVLLIEAGG  467 (720)
Q Consensus       432 ~eyDVVIIGSGiAGLvAA~~LAea~G~KVLVLEKG~  467 (720)
                      .+|||||||||.+|+.||++||++ |++|+|+||+.
T Consensus         2 ~~yDvvVIGgGpaGl~aA~~la~~-g~~V~lie~~~   36 (441)
T PRK08010          2 NKYQAVIIGFGKAGKTLAVTLAKA-GWRVALIEQSN   36 (441)
T ss_pred             CcCCEEEECCCHhHHHHHHHHHHC-CCeEEEEcCCC
Confidence            468999999999999999999999 99999999974

>PRK12771 putative glutamate synthase (NADPH) small subunit; Provisional

Probab=98.02  E-value=3.8e-05  Score=89.07  Aligned_cols=37  Identities=24%  Similarity=0.326  Sum_probs=33.4

Q ss_pred             cccEEEECCcHHHHHHHHHHHhcCCCcEEEEccCCCCC
Q psy14408        433 CFDIIIVGASAAGCVLANRLSEVSSLKVLLIEAGGDTP  470 (720)
Q Consensus       433 eyDVVIIGSGiAGLvAA~~LAea~G~KVLVLEKG~~~~  470 (720)
                      .-+|+|||+|.+||++|..|++. |++|+|+|+....+
T Consensus       137 g~~V~VIGaGpaGL~aA~~l~~~-G~~V~v~e~~~~~G  173 (564)
T PRK12771        137 GKRVAVIGGGPAGLSAAYHLRRM-GHAVTIFEAGPKLG  173 (564)
T ss_pred             CCEEEEECCCHHHHHHHHHHHHC-CCeEEEEecCCCCC
Confidence            34899999999999999999999 99999999986654

>PRK12809 putative oxidoreductase Fe-S binding subunit; Reviewed

Probab=98.02  E-value=0.00012  Score=86.34  Aligned_cols=37  Identities=19%  Similarity=0.280  Sum_probs=33.8

Q ss_pred             cccEEEECCcHHHHHHHHHHHhcCCCcEEEEccCCCCC
Q psy14408        433 CFDIIIVGASAAGCVLANRLSEVSSLKVLLIEAGGDTP  470 (720)
Q Consensus       433 eyDVVIIGSGiAGLvAA~~LAea~G~KVLVLEKG~~~~  470 (720)
                      ..+|+|||||.+||++|..|++. |++|+|+|+....+
T Consensus       310 ~kkVaIIG~GpaGl~aA~~L~~~-G~~Vtv~e~~~~~G  346 (639)
T PRK12809        310 SEKVAVIGAGPAGLGCADILARA-GVQVDVFDRHPEIG  346 (639)
T ss_pred             CCEEEEECcCHHHHHHHHHHHHc-CCcEEEEeCCCCCC
Confidence            45899999999999999999999 99999999987653

>TIGR01318 gltD_gamma_fam glutamate synthase small subunit family protein, proteobacterial

Probab=98.01  E-value=2.2e-05  Score=89.24  Aligned_cols=38  Identities=18%  Similarity=0.333  Sum_probs=34.1

Q ss_pred             CcccEEEECCcHHHHHHHHHHHhcCCCcEEEEccCCCCC
Q psy14408        432 DCFDIIIVGASAAGCVLANRLSEVSSLKVLLIEAGGDTP  470 (720)
Q Consensus       432 ~eyDVVIIGSGiAGLvAA~~LAea~G~KVLVLEKG~~~~  470 (720)
                      ...+|+|||||.+|+++|..|++. |++|+|+|+....+
T Consensus       140 ~~~~V~IIG~GpaGl~aA~~l~~~-G~~V~i~e~~~~~g  177 (467)
T TIGR01318       140 TGKRVAVIGAGPAGLACADILARA-GVQVVVFDRHPEIG  177 (467)
T ss_pred             CCCeEEEECCCHHHHHHHHHHHHc-CCeEEEEecCCCCC
Confidence            345999999999999999999999 99999999986653

This model represents one of three built for the NADPH-dependent or NADH-dependent glutamate synthase (EC 1.4.1.13 and 1.4.1.14, respectively) small subunit and homologs. TIGR01317 describes the small subunit (or equivalent region from longer forms) in eukaryotes, Gram-positive bacteria, and some other lineages, both NADH and NADPH-dependent. TIGR01316 describes a protein of similar length, from Archaea and a number of bacterial lineages, that forms glutamate synthase homotetramers without a large subunit. This model describes both glutatate synthase small subunit and closely related paralogs of unknown function from a number of gamma and alpha subdivision Proteobacteria, including E. coli.

>TIGR00031 UDP-GALP_mutase UDP-galactopyranose mutase

Probab=97.97  E-value=6.8e-06  Score=91.18  Aligned_cols=37  Identities=43%  Similarity=0.605  Sum_probs=33.9

Q ss_pred             ccEEEECCcHHHHHHHHHHHhcCCCcEEEEccCCCCCC
Q psy14408        434 FDIIIVGASAAGCVLANRLSEVSSLKVLLIEAGGDTPI  471 (720)
Q Consensus       434 yDVVIIGSGiAGLvAA~~LAea~G~KVLVLEKG~~~~~  471 (720)
                      +||||||||++|+++|.+|++. |.+|+||||+...++
T Consensus         2 ~DvvIIGaG~aGlsaA~~La~~-G~~V~viEk~~~iGG   38 (377)
T TIGR00031         2 FDYIIVGAGLSGIVLANILAQL-NKRVLVVEKRNHIGG   38 (377)
T ss_pred             CcEEEECCCHHHHHHHHHHHhC-CCeEEEEecCCCCCC
Confidence            6999999999999999999998 999999999866644

The gene is known as glf, ceoA, and rfbD. It is known experimentally in E. coli, Mycobacterium tuberculosis, and Klebsiella pneumoniae.

>PRK07845 flavoprotein disulfide reductase; Reviewed

Probab=97.97  E-value=7.2e-05  Score=84.78  Aligned_cols=31  Identities=26%  Similarity=0.396  Sum_probs=30.3

Q ss_pred             cEEEECCcHHHHHHHHHHHhcCCCcEEEEccC
Q psy14408        435 DIIIVGASAAGCVLANRLSEVSSLKVLLIEAG  466 (720)
Q Consensus       435 DVVIIGSGiAGLvAA~~LAea~G~KVLVLEKG  466 (720)
                      ||||||||.+|+.||..|++. |++|+|+||+
T Consensus         3 ~vvviG~G~~G~~~a~~~~~~-g~~v~~~e~~   33 (466)
T PRK07845          3 RIVIIGGGPGGYEAALVAAQL-GADVTVIERD   33 (466)
T ss_pred             cEEEECCCHHHHHHHHHHHhC-CCeEEEEEcc
Confidence            899999999999999999999 9999999987

>PRK07251 pyridine nucleotide-disulfide oxidoreductase; Provisional

Probab=97.96  E-value=6.6e-06  Score=92.05  Aligned_cols=35  Identities=34%  Similarity=0.541  Sum_probs=33.1

Q ss_pred             CcccEEEECCcHHHHHHHHHHHhcCCCcEEEEccCC
Q psy14408        432 DCFDIIIVGASAAGCVLANRLSEVSSLKVLLIEAGG  467 (720)
Q Consensus       432 ~eyDVVIIGSGiAGLvAA~~LAea~G~KVLVLEKG~  467 (720)
                      .+|||||||||.+|++||.+|++. |++|+|+||+.
T Consensus         2 ~~~dvvVIG~GpaG~~aA~~l~~~-g~~V~liE~~~   36 (438)
T PRK07251          2 LTYDLIVIGFGKAGKTLAAKLASA-GKKVALVEESK   36 (438)
T ss_pred             CccCEEEECCCHHHHHHHHHHHhC-CCEEEEEecCC
Confidence            468999999999999999999999 99999999985

>TIGR01421 gluta_reduc_1 glutathione-disulfide reductase, animal/bacterial

Probab=97.95  E-value=7.7e-06  Score=92.28  Aligned_cols=34  Identities=32%  Similarity=0.547  Sum_probs=32.3

Q ss_pred             cccEEEECCcHHHHHHHHHHHhcCCCcEEEEccCC
Q psy14408        433 CFDIIIVGASAAGCVLANRLSEVSSLKVLLIEAGG  467 (720)
Q Consensus       433 eyDVVIIGSGiAGLvAA~~LAea~G~KVLVLEKG~  467 (720)
                      +|||||||||.+|++||++|++. |+||+|+||+.
T Consensus         2 ~yDvvVIG~GpaG~~aA~~aa~~-G~~V~liE~~~   35 (450)
T TIGR01421         2 HYDYLVIGGGSGGIASARRAAEH-GAKALLVEAKK   35 (450)
T ss_pred             CCCEEEECcCHHHHHHHHHHHHC-CCcEEEecccc
Confidence            58999999999999999999999 99999999964

The tripeptide glutathione is an important reductant, e.g., for maintaining the cellular thiol/disulfide status and for protecting against reactive oxygen species such as hydrogen peroxide. Glutathione-disulfide reductase regenerates reduced glutathione from oxidized glutathione (glutathione disulfide) + NADPH. This model represents one of two closely related subfamilies of glutathione-disulfide reductase. Both are closely related to trypanothione reductase, and separate models are built so each of the three can describe proteins with conserved function. This model describes glutathione-disulfide reductases of animals, yeast, and a number of animal-resident bacteria.

>TIGR00562 proto_IX_ox protoporphyrinogen oxidase

Probab=97.94  E-value=8.5e-06  Score=91.09  Aligned_cols=39  Identities=21%  Similarity=0.298  Sum_probs=34.9

Q ss_pred             ccEEEECCcHHHHHHHHHHHhcC---CCcEEEEccCCCCCCC
Q psy14408        434 FDIIIVGASAAGCVLANRLSEVS---SLKVLLIEAGGDTPIH  472 (720)
Q Consensus       434 yDVVIIGSGiAGLvAA~~LAea~---G~KVLVLEKG~~~~~s  472 (720)
                      .||||||||++||+||++|+++.   |++|+|+||....++.
T Consensus         3 ~~v~VIGaGiaGL~aA~~L~~~~~~~g~~v~vlE~~~r~GG~   44 (462)
T TIGR00562         3 KHVVIIGGGISGLCAAYYLEKEIPELPVELTLVEASDRVGGK   44 (462)
T ss_pred             ceEEEECCCHHHHHHHHHHHhcCCCCCCcEEEEEcCCcCcce
Confidence            49999999999999999999874   8999999998877554

This protein is a flavoprotein and has a beta-alpha-beta dinucleotide binding motif near the amino end.

>PRK06116 glutathione reductase; Validated

Probab=97.94  E-value=7.8e-06  Score=91.76  Aligned_cols=34  Identities=38%  Similarity=0.568  Sum_probs=32.3

Q ss_pred             CcccEEEECCcHHHHHHHHHHHhcCCCcEEEEccC
Q psy14408        432 DCFDIIIVGASAAGCVLANRLSEVSSLKVLLIEAG  466 (720)
Q Consensus       432 ~eyDVVIIGSGiAGLvAA~~LAea~G~KVLVLEKG  466 (720)
                      .+|||||||||.+|++||.+|+++ |++|+|+|++
T Consensus         3 ~~~DvvVIG~GpaG~~aA~~~a~~-G~~V~liE~~   36 (450)
T PRK06116          3 KDYDLIVIGGGSGGIASANRAAMY-GAKVALIEAK   36 (450)
T ss_pred             CCCCEEEECCCHHHHHHHHHHHHC-CCeEEEEecc
Confidence            368999999999999999999999 9999999996

>PF06100 Strep_67kDa_ant: Streptococcal 67 kDa myosin-cross-reactive antigen like family ; InterPro: IPR010354 Members of this family are thought to have structural features in common with the beta chain of the class II antigens, as well as myosin, and may play an important role in the pathogenesis []

Probab=97.93  E-value=9.6e-05  Score=83.90  Aligned_cols=39  Identities=18%  Similarity=0.029  Sum_probs=33.4

Q ss_pred             ccEEEECCcHHHHHHHHHHHhc---CCCcEEEEccCCCCCCC
Q psy14408        434 FDIIIVGASAAGCVLANRLSEV---SSLKVLLIEAGGDTPIH  472 (720)
Q Consensus       434 yDVVIIGSGiAGLvAA~~LAea---~G~KVLVLEKG~~~~~s  472 (720)
                      .++=|||||+|+|+||.+|-+.   +|.+|.+||+....+++
T Consensus         3 ~~AyivGsGiAsLAAAvfLIrDa~~pg~nIhIlE~~~~~GGs   44 (500)
T PF06100_consen    3 KKAYIVGSGIASLAAAVFLIRDAKMPGENIHILEELDVPGGS   44 (500)
T ss_pred             ceEEEECCCHHHHHhhhhhhccCCCCccceEEEeCCCCCCCc
Confidence            4788999999999999999986   47899999998666554

>PRK06292 dihydrolipoamide dehydrogenase; Validated

Probab=97.93  E-value=9.1e-06  Score=91.32  Aligned_cols=34  Identities=44%  Similarity=0.737  Sum_probs=32.3

Q ss_pred             CcccEEEECCcHHHHHHHHHHHhcCCCcEEEEccC
Q psy14408        432 DCFDIIIVGASAAGCVLANRLSEVSSLKVLLIEAG  466 (720)
Q Consensus       432 ~eyDVVIIGSGiAGLvAA~~LAea~G~KVLVLEKG  466 (720)
                      .+|||||||||.+|++||++|++. |++|+|||++
T Consensus         2 ~~yDvvIIG~G~aGl~aA~~l~~~-g~~v~lie~~   35 (460)
T PRK06292          2 EKYDVIVIGAGPAGYVAARRAAKL-GKKVALIEKG   35 (460)
T ss_pred             CcccEEEECCCHHHHHHHHHHHHC-CCeEEEEeCC
Confidence            568999999999999999999999 9999999994

>TIGR01292 TRX_reduct thioredoxin-disulfide reductase

Probab=97.92  E-value=9.3e-06  Score=84.52  Aligned_cols=57  Identities=26%  Similarity=0.370  Sum_probs=43.7

Q ss_pred             CC-CeEEEcCeEEEEEEEccCCcEEEEEEEec-CCcEEEEEcCcEEEEccCCcchHHHHHHc
Q psy14408        647 RT-NLYVLKRSKVTKVIINDQNVATGVEYVNS-KGETVRVTANKEVILTAGAIANAQLLLLS  706 (720)
Q Consensus       647 ~a-GVkIi~gt~VtkIl~e~gGrAtGV~v~dt-~G~e~tIkAkK~VVVAAGa~~Sp~LLl~S  706 (720)
                      +. |++++.++.|++|..+  +++.++++.+. .|...++.++ .||+|+|......+|..+
T Consensus       188 ~~~gv~~~~~~~v~~i~~~--~~~~~v~~~~~~~g~~~~i~~D-~vi~a~G~~~~~~~l~~~  246 (300)
T TIGR01292       188 KNPNIEFLWNSTVKEIVGD--NKVEGVKIKNTVTGEEEELKVD-GVFIAIGHEPNTELLKGL  246 (300)
T ss_pred             hCCCeEEEeccEEEEEEcc--CcEEEEEEEecCCCceEEEEcc-EEEEeeCCCCChHHHHHh
Confidence            55 9999999999999855  36777777653 4556789998 699999977666676654

This model describes thioredoxin-disulfide reductase, a member of the pyridine nucleotide-disulphide oxidoreductases (PFAM:PF00070).

>PRK09853 putative selenate reductase subunit YgfK; Provisional

Probab=97.91  E-value=0.00012  Score=89.86  Aligned_cols=38  Identities=21%  Similarity=0.211  Sum_probs=34.1

Q ss_pred             cccEEEECCcHHHHHHHHHHHhcCCCcEEEEccCCCCCC
Q psy14408        433 CFDIIIVGASAAGCVLANRLSEVSSLKVLLIEAGGDTPI  471 (720)
Q Consensus       433 eyDVVIIGSGiAGLvAA~~LAea~G~KVLVLEKG~~~~~  471 (720)
                      ..+|+|||||.+|++||++|+++ |++|+|+|+....++
T Consensus       539 gKkVaIIGgGPAGLsAA~~Lar~-G~~VtV~Ek~~~~GG  576 (1019)
T PRK09853        539 RKKVAVIGAGPAGLAAAYFLARA-GHPVTVFEREENAGG  576 (1019)
T ss_pred             CCcEEEECCCHHHHHHHHHHHHc-CCeEEEEecccccCc
Confidence            45999999999999999999999 999999999866543

>PF13434 K_oxygenase: L-lysine 6-monooxygenase (NADPH-requiring); PDB: 3S61_B 3S5W_B

Probab=97.90  E-value=5.9e-05  Score=82.61  Aligned_cols=60  Identities=25%  Similarity=0.270  Sum_probs=39.7

Q ss_pred             HHHHHHHHHHhcCCCeEEEcCeEEEEEEEccCC--cEEEEEEEecCCcEEEEEcCcEEEEccCC
Q psy14408        635 AADAYLTPIAGKRTNLYVLKRSKVTKVIINDQN--VATGVEYVNSKGETVRVTANKEVILTAGA  696 (720)
Q Consensus       635 aa~a~L~~Aa~e~aGVkIi~gt~VtkIl~e~gG--rAtGV~v~dt~G~e~tIkAkK~VVVAAGa  696 (720)
                      ....|++.++ ++.+..+..+.+|++|..+.++  ...-|++.+.+|...++.|+ .||||+|.
T Consensus        96 ef~dYl~Wva-~~~~~~v~~~~~V~~I~~~~~~~~~~~~V~~~~~~g~~~~~~ar-~vVla~G~  157 (341)
T PF13434_consen   96 EFNDYLRWVA-EQLDNQVRYGSEVTSIEPDDDGDEDLFRVTTRDSDGDGETYRAR-NVVLATGG  157 (341)
T ss_dssp             HHHHHHHHHH-CCGTTTEEESEEEEEEEEEEETTEEEEEEEEEETTS-EEEEEES-EEEE----
T ss_pred             HHHHHHHHHH-HhCCCceEECCEEEEEEEecCCCccEEEEEEeecCCCeeEEEeC-eEEECcCC
Confidence            3456788877 5666668889999999987222  34556665556777899997 59999994

>PRK07818 dihydrolipoamide dehydrogenase; Reviewed

Probab=97.89  E-value=1.3e-05  Score=90.64  Aligned_cols=35  Identities=29%  Similarity=0.477  Sum_probs=32.7

Q ss_pred             cccEEEECCcHHHHHHHHHHHhcCCCcEEEEccCCC
Q psy14408        433 CFDIIIVGASAAGCVLANRLSEVSSLKVLLIEAGGD  468 (720)
Q Consensus       433 eyDVVIIGSGiAGLvAA~~LAea~G~KVLVLEKG~~  468 (720)
                      +|||||||||.+|++||.+|++. |++|+|||++..
T Consensus         4 ~~DvvIIG~GpaG~~AA~~aa~~-G~~V~lie~~~~   38 (466)
T PRK07818          4 HYDVVVLGAGPGGYVAAIRAAQL-GLKTAVVEKKYW   38 (466)
T ss_pred             cCCEEEECCCHHHHHHHHHHHhC-CCeEEEEecCCC
Confidence            58999999999999999999999 999999999743

>COG3634 AhpF Alkyl hydroperoxide reductase, large subunit [Posttranslational modification, protein turnover, chaperones]

Probab=97.88  E-value=4.5e-05  Score=82.82  Aligned_cols=59  Identities=22%  Similarity=0.354  Sum_probs=50.3

Q ss_pred             cCCCeEEEcCeEEEEEEEccCCcEEEEEEEec-CCcEEEEEcCcEEEEccCCcchHHHHHHc
Q psy14408        646 KRTNLYVLKRSKVTKVIINDQNVATGVEYVNS-KGETVRVTANKEVILTAGAIANAQLLLLS  706 (720)
Q Consensus       646 e~aGVkIi~gt~VtkIl~e~gGrAtGV~v~dt-~G~e~tIkAkK~VVVAAGa~~Sp~LLl~S  706 (720)
                      .-.+++|++++.-++|.-+ +.+|+|+++++. .|+.+.+.-. .|+|--|-+.+..+|.-+
T Consensus       401 sl~Nv~ii~na~Ttei~Gd-g~kV~Gl~Y~dr~sge~~~l~Le-GvFVqIGL~PNT~WLkg~  460 (520)
T COG3634         401 SLPNVTIITNAQTTEVKGD-GDKVTGLEYRDRVSGEEHHLELE-GVFVQIGLLPNTEWLKGA  460 (520)
T ss_pred             cCCCcEEEecceeeEEecC-CceecceEEEeccCCceeEEEee-eeEEEEecccChhHhhch
Confidence            4568999999999999988 889999999986 6777778776 599999998888888654

>COG1252 Ndh NADH dehydrogenase, FAD-containing subunit [Energy production and conversion]

Probab=97.87  E-value=0.00023  Score=79.68  Aligned_cols=59  Identities=32%  Similarity=0.442  Sum_probs=42.5

Q ss_pred             HHHHHHhcCCCeEEEcCeEEEEEEEccCCcEEEEEEEecCCcEEEEEcCcEEEEccCCcchHHHHHH-cCCC
Q psy14408        639 YLTPIAGKRTNLYVLKRSKVTKVIINDQNVATGVEYVNSKGETVRVTANKEVILTAGAIANAQLLLL-SGIG  709 (720)
Q Consensus       639 ~L~~Aa~e~aGVkIi~gt~VtkIl~e~gGrAtGV~v~dt~G~e~tIkAkK~VVVAAGa~~Sp~LLl~-SGIg  709 (720)
                      +...++ ++.||+|++++.|++|.-+      ||.+.+  |++ +|.++ .||-|||.-. +.++.. +|+.
T Consensus       214 ~a~~~L-~~~GV~v~l~~~Vt~v~~~------~v~~~~--g~~-~I~~~-tvvWaaGv~a-~~~~~~l~~~e  273 (405)
T COG1252         214 YAERAL-EKLGVEVLLGTPVTEVTPD------GVTLKD--GEE-EIPAD-TVVWAAGVRA-SPLLKDLSGLE  273 (405)
T ss_pred             HHHHHH-HHCCCEEEcCCceEEECCC------cEEEcc--CCe-eEecC-EEEEcCCCcC-ChhhhhcChhh
Confidence            455555 6899999999999999755      676665  543 69997 6999999754 455555 4533

>COG0562 Glf UDP-galactopyranose mutase [Cell envelope biogenesis, outer membrane]

Probab=97.84  E-value=1.6e-05  Score=85.55  Aligned_cols=38  Identities=32%  Similarity=0.530  Sum_probs=35.3

Q ss_pred             ccEEEECCcHHHHHHHHHHHhcCCCcEEEEccCCCCCCC
Q psy14408        434 FDIIIVGASAAGCVLANRLSEVSSLKVLLIEAGGDTPIH  472 (720)
Q Consensus       434 yDVVIIGSGiAGLvAA~~LAea~G~KVLVLEKG~~~~~s  472 (720)
                      +|+||||||++|+++|..||+. |++||||||..+.++.
T Consensus         2 fd~lIVGaGlsG~V~A~~a~~~-gk~VLIvekR~HIGGN   39 (374)
T COG0562           2 FDYLIVGAGLSGAVIAEVAAQL-GKRVLIVEKRNHIGGN   39 (374)
T ss_pred             CcEEEECCchhHHHHHHHHHHc-CCEEEEEeccccCCCc
Confidence            7999999999999999988888 9999999999888665

>PRK05976 dihydrolipoamide dehydrogenase; Validated

Probab=97.84  E-value=1.5e-05  Score=90.17  Aligned_cols=35  Identities=34%  Similarity=0.630  Sum_probs=32.8

Q ss_pred             CcccEEEECCcHHHHHHHHHHHhcCCCcEEEEccCC
Q psy14408        432 DCFDIIIVGASAAGCVLANRLSEVSSLKVLLIEAGG  467 (720)
Q Consensus       432 ~eyDVVIIGSGiAGLvAA~~LAea~G~KVLVLEKG~  467 (720)
                      ..|||||||||.+|+.||.+|++. |++|+|||++.
T Consensus         3 ~~ydvvVIG~GpaG~~aA~~aa~~-G~~v~lie~~~   37 (472)
T PRK05976          3 KEYDLVIIGGGPGGYVAAIRAGQL-GLKTALVEKGK   37 (472)
T ss_pred             ccccEEEECCCHHHHHHHHHHHhC-CCeEEEEEccC
Confidence            368999999999999999999999 99999999973

>PRK12416 protoporphyrinogen oxidase; Provisional

Probab=97.82  E-value=1.4e-05  Score=89.72  Aligned_cols=38  Identities=16%  Similarity=0.276  Sum_probs=33.3

Q ss_pred             cEEEECCcHHHHHHHHHHHhc-----CCCcEEEEccCCCCCCC
Q psy14408        435 DIIIVGASAAGCVLANRLSEV-----SSLKVLLIEAGGDTPIH  472 (720)
Q Consensus       435 DVVIIGSGiAGLvAA~~LAea-----~G~KVLVLEKG~~~~~s  472 (720)
                      +|||||||++||+||++|+++     .|++|+||||..+.++.
T Consensus         3 ~v~VIGaGisGL~aA~~L~~~~~~~~~~~~V~vlEa~~r~GGr   45 (463)
T PRK12416          3 TVVVIGGGITGLSTMFYLEKLKKDYNIDLNLILVEKEEYLGGK   45 (463)
T ss_pred             eEEEECCCHHHHHHHHHHHhhhhccCCCccEEEEecCCCccce
Confidence            699999999999999999985     14899999999887655

>PRK14694 putative mercuric reductase; Provisional

Probab=97.81  E-value=2e-05  Score=89.10  Aligned_cols=37  Identities=27%  Similarity=0.426  Sum_probs=34.2

Q ss_pred             CCCcccEEEECCcHHHHHHHHHHHhcCCCcEEEEccCC
Q psy14408        430 SGDCFDIIIVGASAAGCVLANRLSEVSSLKVLLIEAGG  467 (720)
Q Consensus       430 ~d~eyDVVIIGSGiAGLvAA~~LAea~G~KVLVLEKG~  467 (720)
                      .+..|||||||||.+|++||.+|++. |++|+|+|++.
T Consensus         3 ~~~~~dviVIGaG~aG~~aA~~l~~~-g~~v~lie~~~   39 (468)
T PRK14694          3 SDNNLHIAVIGSGGSAMAAALKATER-GARVTLIERGT   39 (468)
T ss_pred             CCCcCCEEEECCCHHHHHHHHHHHhC-CCcEEEEEccc
Confidence            45678999999999999999999999 99999999974

>PF05834 Lycopene_cycl: Lycopene cyclase protein; InterPro: IPR008671 This family consists of lycopene beta and epsilon cyclase proteins

Probab=97.81  E-value=1.6e-05  Score=87.57  Aligned_cols=34  Identities=50%  Similarity=0.699  Sum_probs=31.2

Q ss_pred             cEEEECCcHHHHHHHHHH--HhcCCCcEEEEccCCCC
Q psy14408        435 DIIIVGASAAGCVLANRL--SEVSSLKVLLIEAGGDT  469 (720)
Q Consensus       435 DVVIIGSGiAGLvAA~~L--Aea~G~KVLVLEKG~~~  469 (720)
                      ||||||||++|+++|++|  ++. |++|+|||+....
T Consensus         1 DviIvGaGpAGlslA~~l~~~~~-g~~Vllid~~~~~   36 (374)
T PF05834_consen    1 DVIIVGAGPAGLSLARRLADARP-GLSVLLIDPKPKP   36 (374)
T ss_pred             CEEEECCcHHHHHHHHHHHhcCC-CCEEEEEcCCccc
Confidence            999999999999999999  777 9999999997554

Carotenoids with cyclic end groups are essential components of the photosynthetic membranes in all plants, algae, and cyanobacteria. These lipid-soluble compounds protect against photo-oxidation, harvest light for photosynthesis, and dissipate excess light energy absorbed by the antenna pigments. The cyclisation of lycopene (psi, psi-carotene) is a key branch point in the pathway of carotenoid biosynthesis. Two types of cyclic end groups are found in higher plant carotenoids: the beta and epsilon rings. Carotenoids with two beta rings are ubiquitous, and those with one beta and one epsilon ring are common; however, carotenoids with two epsilon rings are rare [].; GO: 0016705 oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 0016117 carotenoid biosynthetic process

>TIGR02053 MerA mercuric reductase

Probab=97.79  E-value=2e-05  Score=88.81  Aligned_cols=34  Identities=29%  Similarity=0.523  Sum_probs=32.0

Q ss_pred             ccEEEECCcHHHHHHHHHHHhcCCCcEEEEccCCC
Q psy14408        434 FDIIIVGASAAGCVLANRLSEVSSLKVLLIEAGGD  468 (720)
Q Consensus       434 yDVVIIGSGiAGLvAA~~LAea~G~KVLVLEKG~~  468 (720)
                      |||||||||.+|++||.+|++. |++|+|+||+..
T Consensus         1 yDvvVIGaGpaG~~aA~~aa~~-g~~v~lie~~~~   34 (463)
T TIGR02053         1 YDLVIIGSGAAAFAAAIKAAEL-GASVAMVERGPL   34 (463)
T ss_pred             CCEEEECCCHHHHHHHHHHHHC-CCeEEEEeCCcc
Confidence            6999999999999999999999 999999999753

This model represents the mercuric reductase found in the mer operon for the detoxification of mercury compounds. MerA is a FAD-containing flavoprotein which reduces Hg(II) to Hg(0) utilizing NADPH.

>PLN02568 polyamine oxidase

Probab=97.79  E-value=2.2e-05  Score=90.92  Aligned_cols=39  Identities=31%  Similarity=0.406  Sum_probs=35.1

Q ss_pred             cccEEEECCcHHHHHHHHHHHhcCC-----CcEEEEccCCCCCCC
Q psy14408        433 CFDIIIVGASAAGCVLANRLSEVSS-----LKVLLIEAGGDTPIH  472 (720)
Q Consensus       433 eyDVVIIGSGiAGLvAA~~LAea~G-----~KVLVLEKG~~~~~s  472 (720)
                      ..||||||||++||+||++|++. |     ++|+||||+...++.
T Consensus         5 ~~~v~iiGaG~aGl~aa~~L~~~-g~~~~~~~v~v~E~~~~~GGr   48 (539)
T PLN02568          5 KPRIVIIGAGMAGLTAANKLYTS-SAANDMFELTVVEGGDRIGGR   48 (539)
T ss_pred             CCcEEEECCCHHHHHHHHHHHhc-ccccCCceEEEEeCCCCcCCe
Confidence            46999999999999999999988 7     999999999877554

>KOG2311|consensus

Probab=97.78  E-value=6e-05  Score=84.53  Aligned_cols=36  Identities=25%  Similarity=0.586  Sum_probs=33.0

Q ss_pred             CCCcccEEEECCcHHHHHHHHHHHhcCCCcEEEEccC
Q psy14408        430 SGDCFDIIIVGASAAGCVLANRLSEVSSLKVLLIEAG  466 (720)
Q Consensus       430 ~d~eyDVVIIGSGiAGLvAA~~LAea~G~KVLVLEKG  466 (720)
                      .+..|||||||||.||+-||...|+- |.+.+||-..
T Consensus        25 ~~~~~dVvVIGgGHAG~EAAaAaaR~-Ga~TlLlT~~   60 (679)
T KOG2311|consen   25 STSTYDVVVIGGGHAGCEAAAAAARL-GARTLLLTHN   60 (679)
T ss_pred             CCCcccEEEECCCccchHHHHHHHhc-CCceEEeecc
Confidence            35679999999999999999999999 9999999876

>TIGR03169 Nterm_to_SelD pyridine nucleotide-disulfide oxidoreductase family protein

Probab=97.77  E-value=0.00052  Score=74.65  Aligned_cols=59  Identities=20%  Similarity=0.292  Sum_probs=40.7

Q ss_pred             HHHHHHHhcCCCeEEEcCeEEEEEEEccCCcEEEEEEEecCCcEEEEEcCcEEEEccCCcchHHHHHHcCCC
Q psy14408        638 AYLTPIAGKRTNLYVLKRSKVTKVIINDQNVATGVEYVNSKGETVRVTANKEVILTAGAIANAQLLLLSGIG  709 (720)
Q Consensus       638 a~L~~Aa~e~aGVkIi~gt~VtkIl~e~gGrAtGV~v~dt~G~e~tIkAkK~VVVAAGa~~Sp~LLl~SGIg  709 (720)
                      .++.+.+ ++.|++++.++.|++|.   ++   +|.+.+  |+  ++.++ .||+|+|... ..+|..+|+.
T Consensus       195 ~~~~~~l-~~~gV~v~~~~~v~~i~---~~---~v~~~~--g~--~i~~D-~vi~a~G~~p-~~~l~~~gl~  253 (364)
T TIGR03169       195 RLVLRLL-ARRGIEVHEGAPVTRGP---DG---ALILAD--GR--TLPAD-AILWATGARA-PPWLAESGLP  253 (364)
T ss_pred             HHHHHHH-HHCCCEEEeCCeeEEEc---CC---eEEeCC--CC--EEecC-EEEEccCCCh-hhHHHHcCCC
Confidence            3444445 57899999999999884   22   354433  53  68888 5999999754 4566777764

Members of this protein family include N-terminal sequence regions of (probable) bifunctional proteins whose C-terminal sequences are SelD, or selenide,water dikinase, the selenium donor protein necessary for selenium incorporation into protein (as selenocysteine), tRNA (as 2-selenouridine), or both. However, some members of this family occur in species that do not show selenium incorporation, and the function of this protein family is unknown.

>PTZ00058 glutathione reductase; Provisional

Probab=97.76  E-value=2.6e-05  Score=90.67  Aligned_cols=37  Identities=27%  Similarity=0.443  Sum_probs=34.0

Q ss_pred             CCCcccEEEECCcHHHHHHHHHHHhcCCCcEEEEccCC
Q psy14408        430 SGDCFDIIIVGASAAGCVLANRLSEVSSLKVLLIEAGG  467 (720)
Q Consensus       430 ~d~eyDVVIIGSGiAGLvAA~~LAea~G~KVLVLEKG~  467 (720)
                      .+.+|||||||||.+|.+||.+||+. |++|+||||+.
T Consensus        45 ~~~~yDvvVIG~G~aG~~aA~~aa~~-G~~ValIEk~~   81 (561)
T PTZ00058         45 PRMVYDLIVIGGGSGGMAAARRAARN-KAKVALVEKDY   81 (561)
T ss_pred             CCccccEEEECcCHHHHHHHHHHHHc-CCeEEEEeccc
Confidence            34679999999999999999999999 99999999974

>TIGR03143 AhpF_homolog putative alkyl hydroperoxide reductase F subunit

Probab=97.76  E-value=2.6e-05  Score=90.36  Aligned_cols=34  Identities=29%  Similarity=0.492  Sum_probs=32.2

Q ss_pred             cccEEEECCcHHHHHHHHHHHhcCCCcEEEEccCC
Q psy14408        433 CFDIIIVGASAAGCVLANRLSEVSSLKVLLIEAGG  467 (720)
Q Consensus       433 eyDVVIIGSGiAGLvAA~~LAea~G~KVLVLEKG~  467 (720)
                      .|||||||||.+|++||.+|+++ |++|+||||+.
T Consensus         4 ~yDVvIIGgGpAGL~AA~~lar~-g~~V~liE~~~   37 (555)
T TIGR03143         4 IYDLIIIGGGPAGLSAGIYAGRA-KLDTLIIEKDD   37 (555)
T ss_pred             cCcEEEECCCHHHHHHHHHHHHC-CCCEEEEecCC
Confidence            48999999999999999999999 99999999974

This family of thioredoxin reductase homologs is found adjacent to alkylhydroperoxide reductase C subunit predominantly in cases where there is only one C subunit in the genome and that genome is lacking the F subunit partner (also a thioredcxin reductase homolog) that is usually found (TIGR03140).

>PRK13984 putative oxidoreductase; Provisional

Probab=97.73  E-value=0.00027  Score=82.62  Aligned_cols=39  Identities=23%  Similarity=0.204  Sum_probs=34.6

Q ss_pred             CcccEEEECCcHHHHHHHHHHHhcCCCcEEEEccCCCCCC
Q psy14408        432 DCFDIIIVGASAAGCVLANRLSEVSSLKVLLIEAGGDTPI  471 (720)
Q Consensus       432 ~eyDVVIIGSGiAGLvAA~~LAea~G~KVLVLEKG~~~~~  471 (720)
                      ...+|+|||+|.+|+++|..|+++ |++|+|+|+....++
T Consensus       282 ~~~~v~IIGaG~aGl~aA~~L~~~-G~~v~vie~~~~~gG  320 (604)
T PRK13984        282 KNKKVAIVGSGPAGLSAAYFLATM-GYEVTVYESLSKPGG  320 (604)
T ss_pred             CCCeEEEECCCHHHHHHHHHHHHC-CCeEEEEecCCCCCc
Confidence            345899999999999999999999 999999999876543

>KOG2960|consensus

Probab=97.73  E-value=5.3e-05  Score=77.62  Aligned_cols=35  Identities=37%  Similarity=0.499  Sum_probs=31.6

Q ss_pred             CcccEEEECCcHHHHHHHHHHHh-cCCCcEEEEccC
Q psy14408        432 DCFDIIIVGASAAGCVLANRLSE-VSSLKVLLIEAG  466 (720)
Q Consensus       432 ~eyDVVIIGSGiAGLvAA~~LAe-a~G~KVLVLEKG  466 (720)
                      .+.||||||+|.+||++|+.+++ ++.+||.+||..
T Consensus        75 AesDvviVGAGSaGLsAAY~I~~~rPdlkvaIIE~S  110 (328)
T KOG2960|consen   75 AESDVVIVGAGSAGLSAAYVIAKNRPDLKVAIIESS  110 (328)
T ss_pred             hccceEEECCCccccceeeeeeccCCCceEEEEEee
Confidence            35699999999999999999995 578999999986

>PRK13748 putative mercuric reductase; Provisional

Probab=97.73  E-value=2.7e-05  Score=89.78  Aligned_cols=34  Identities=26%  Similarity=0.399  Sum_probs=32.7

Q ss_pred             CcccEEEECCcHHHHHHHHHHHhcCCCcEEEEccC
Q psy14408        432 DCFDIIIVGASAAGCVLANRLSEVSSLKVLLIEAG  466 (720)
Q Consensus       432 ~eyDVVIIGSGiAGLvAA~~LAea~G~KVLVLEKG  466 (720)
                      .+|||||||||.+|++||.+|++. |++|+|||++
T Consensus        97 ~~~DvvVIG~GpaG~~aA~~~~~~-G~~v~lie~~  130 (561)
T PRK13748         97 RPLHVAVIGSGGAAMAAALKAVEQ-GARVTLIERG  130 (561)
T ss_pred             CCCCEEEECcCHHHHHHHHHHHhC-CCeEEEEecC
Confidence            479999999999999999999999 9999999997

>COG3349 Uncharacterized conserved protein [Function unknown]

Probab=97.73  E-value=2.7e-05  Score=88.37  Aligned_cols=37  Identities=30%  Similarity=0.311  Sum_probs=33.9

Q ss_pred             cEEEECCcHHHHHHHHHHHhcCCCcEEEEccCCCCCCC
Q psy14408        435 DIIIVGASAAGCVLANRLSEVSSLKVLLIEAGGDTPIH  472 (720)
Q Consensus       435 DVVIIGSGiAGLvAA~~LAea~G~KVLVLEKG~~~~~s  472 (720)
                      -|+|+|||++||+||++||++ |++|+|+|++.+.++-
T Consensus         2 rVai~GaG~AgL~~a~~La~~-g~~vt~~ea~~~~GGk   38 (485)
T COG3349           2 RVAIAGAGLAGLAAAYELADA-GYDVTLYEARDRLGGK   38 (485)
T ss_pred             eEEEEcccHHHHHHHHHHHhC-CCceEEEeccCccCce
Confidence            599999999999999999999 9999999999887543

>PF07992 Pyr_redox_2: Pyridine nucleotide-disulphide oxidoreductase; InterPro: IPR023753 FAD flavoproteins belonging to the family of pyridine nucleotide-disulphide oxidoreductases (glutathione reductase, trypanothione reductase, lipoamide dehydrogenase, mercuric reductase, thioredoxin reductase, alkyl hydroperoxide reductase) share sequence similarity with a number of other flavoprotein oxidoreductases, in particular with ferredoxin-NAD+ reductases involved in oxidative metabolism of a variety of hydrocarbons (rubredoxin reductase, putidaredoxin reductase, terpredoxin reductase, ferredoxin-NAD+ reductase components of benzene 1,2-dioxygenase, toluene 1,2-dioxygenase, chlorobenzene dioxygenase, biphenyl dioxygenase), NADH oxidase and NADH peroxidase [, , ]

Probab=97.72  E-value=3.3e-05  Score=75.97  Aligned_cols=31  Identities=39%  Similarity=0.590  Sum_probs=29.8

Q ss_pred             cEEEECCcHHHHHHHHHHHhcCCCcEEEEccC
Q psy14408        435 DIIIVGASAAGCVLANRLSEVSSLKVLLIEAG  466 (720)
Q Consensus       435 DVVIIGSGiAGLvAA~~LAea~G~KVLVLEKG  466 (720)
                      ||||||||.+|+.||.+|++. |++|+|+|+.
T Consensus         1 ~vvIIGgG~aGl~aA~~l~~~-~~~v~ii~~~   31 (201)
T PF07992_consen    1 DVVIIGGGPAGLSAALELARP-GAKVLIIEKS   31 (201)
T ss_dssp             EEEEESSSHHHHHHHHHHHHT-TSEEEEESSS
T ss_pred             CEEEEecHHHHHHHHHHHhcC-CCeEEEEecc
Confidence            799999999999999999988 9999999886

Comparison of the crystal structures of human glutathione reductase and Escherichia coli thioredoxin reductase reveals different locations of their active sites, suggesting that the enzymes diverged from an ancestral FAD/NAD(P)H reductase and acquired their disulphide reductase activities independently []. Despite functional similarities, oxidoreductases of this family show no sequence similarity with adrenodoxin reductases [] and flavoprotein pyridine nucleotide cytochrome reductases (FPNCR) []. Assuming that disulphide reductase activity emerged later, during divergent evolution, the family can be referred to as FAD-dependent pyridine nucleotide reductases, FADPNR. To date, 3D structures of glutathione reductase [], thioredoxin reductase [], mercuric reductase [], lipoamide dehydrogenase [], trypanothione reductase [] and NADH peroxidase [] have been solved. The enzymes share similar tertiary structures based on a doubly-wound alpha/beta fold, but the relative orientations of their FAD- and NAD(P)H-binding domains may vary significantly. By contrast with the FPNCR family, the folds of the FAD- and NAD(P)H-binding domains are similar, suggesting that the domains evolved by gene duplication []. This entry describes the FAD binding domain which has a nested NADH binding domain and is found in both class I and class II oxidoreductases. ; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 3IC9_A 1Q1W_A 3LB8_A 1Q1R_B 3GD4_A 1GV4_A 3GD3_A 2EQ9_E 2EQ6_B 2EQ8_E ....

>PF00996 GDI: GDP dissociation inhibitor; InterPro: IPR018203 Rab proteins constitute a family of small GTPases that serve a regulatory role in vesicular membrane traffic [, ]; C-terminal geranylgeranylation is crucial for their membrane association and function

Probab=97.69  E-value=0.00028  Score=79.78  Aligned_cols=41  Identities=29%  Similarity=0.377  Sum_probs=32.0

Q ss_pred             CCcccEEEECCcHHHHHHHHHHHhcCCCcEEEEccCCCCCCC
Q psy14408        431 GDCFDIIIVGASAAGCVLANRLSEVSSLKVLLIEAGGDTPIH  472 (720)
Q Consensus       431 d~eyDVVIIGSGiAGLvAA~~LAea~G~KVLVLEKG~~~~~s  472 (720)
                      +.+|||||+|.|..-+..|..|+++ |.|||.|||+...++.
T Consensus         2 ~~~yDviI~GTGl~esila~als~~-GkkVLhiD~n~yYGg~   42 (438)
T PF00996_consen    2 DEEYDVIILGTGLTESILAAALSRS-GKKVLHIDRNDYYGGE   42 (438)
T ss_dssp             -SBESEEEE--SHHHHHHHHHHHHT-T--EEEE-SSSSSCGG
T ss_pred             CccceEEEECCCcHHHHHHHHHHhc-CCEEEecCCCCCcCCc
Confidence            4689999999999999999999999 9999999999877544

This post-translational modification is catalysed by Rab geranylgeranyl transferase (Rab-GGTase), a multi-subunit enzyme that contains a catalytic heterodimer and an accessory component, termed Rab escort protein (REP)-1 []. REP-1 presents newly- synthesised Rab proteins to the catalytic component, and forms a stable complex with the prenylated proteins following the transfer reaction. The mechanism of REP-1-mediated membrane association of Rab5 is similar to that mediated by Rab GDP dissociation inhibitor (GDI). REP-1 and Rab GDI also share other functional properties, including the ability to inhibit the release of GDP and to remove Rab proteins from membranes. The crystal structure of the bovine alpha-isoform of Rab GDI has been determined to a resolution of 1.81A []. The protein is composed of two main structural units: a large complex multi-sheet domain I, and a smaller alpha-helical domain II. The structural organisation of domain I is closely related to FAD-containing monooxygenases and oxidases []. Conserved regions common to GDI and the choroideraemia gene product, which delivers Rab to catalytic subunits of Rab geranylgeranyltransferase II, are clustered on one face of the domain []. The two most conserved regions form a compact structure at the apex of the molecule; site-directed mutagenesis has shown these regions to play a critical role in the binding of Rab proteins [].; PDB: 1VG9_C 1VG0_A 1LTX_R 3P1W_A 3CPH_H 3CPJ_G 3CPI_H 1UKV_G 2BCG_G 1GND_A ....

>PTZ00318 NADH dehydrogenase-like protein; Provisional

Probab=97.68  E-value=0.00081  Score=75.35  Aligned_cols=37  Identities=14%  Similarity=0.297  Sum_probs=32.7

Q ss_pred             CcccEEEECCcHHHHHHHHHHHhcCCCcEEEEccCCCC
Q psy14408        432 DCFDIIIVGASAAGCVLANRLSEVSSLKVLLIEAGGDT  469 (720)
Q Consensus       432 ~eyDVVIIGSGiAGLvAA~~LAea~G~KVLVLEKG~~~  469 (720)
                      ...+|||||||.+|+.+|.+|.+. +++|+|||+..+.
T Consensus         9 ~~~~vVIvGgG~aGl~~a~~L~~~-~~~ItlI~~~~~~   45 (424)
T PTZ00318          9 KKPNVVVLGTGWAGAYFVRNLDPK-KYNITVISPRNHM   45 (424)
T ss_pred             CCCeEEEECCCHHHHHHHHHhCcC-CCeEEEEcCCCCc
Confidence            445999999999999999999877 8999999997664

>PRK14989 nitrite reductase subunit NirD; Provisional

Probab=97.66  E-value=0.00062  Score=82.95  Aligned_cols=66  Identities=9%  Similarity=0.239  Sum_probs=48.7

Q ss_pred             HHHHHHHhcCCCeEEEcCeEEEEEEEccCCcEEEEEEEecCCcEEEEEcCcEEEEccCCcchHHHHHHcCCC
Q psy14408        638 AYLTPIAGKRTNLYVLKRSKVTKVIINDQNVATGVEYVNSKGETVRVTANKEVILTAGAIANAQLLLLSGIG  709 (720)
Q Consensus       638 a~L~~Aa~e~aGVkIi~gt~VtkIl~e~gGrAtGV~v~dt~G~e~tIkAkK~VVVAAGa~~Sp~LLl~SGIg  709 (720)
                      ..+.+.+ ++.|++|++++.|++|..++.+.+.+|.+.+  |+  ++.++ .||+|+|......|+..+|+.
T Consensus       191 ~~l~~~L-~~~GV~v~~~~~v~~I~~~~~~~~~~v~~~d--G~--~i~~D-~Vv~A~G~rPn~~L~~~~Gl~  256 (847)
T PRK14989        191 EQLRRKI-ESMGVRVHTSKNTLEIVQEGVEARKTMRFAD--GS--ELEVD-FIVFSTGIRPQDKLATQCGLA  256 (847)
T ss_pred             HHHHHHH-HHCCCEEEcCCeEEEEEecCCCceEEEEECC--CC--EEEcC-EEEECCCcccCchHHhhcCcc
Confidence            3455555 5889999999999999754223455555544  64  68898 699999988887787788875

>PTZ00052 thioredoxin reductase; Provisional

Probab=97.64  E-value=4.1e-05  Score=87.66  Aligned_cols=33  Identities=21%  Similarity=0.426  Sum_probs=31.4

Q ss_pred             cccEEEECCcHHHHHHHHHHHhcCCCcEEEEccC
Q psy14408        433 CFDIIIVGASAAGCVLANRLSEVSSLKVLLIEAG  466 (720)
Q Consensus       433 eyDVVIIGSGiAGLvAA~~LAea~G~KVLVLEKG  466 (720)
                      .|||||||||.+|+.||.+|+++ |++|+|||++
T Consensus         5 ~yDviVIG~GpaG~~AA~~aa~~-G~~V~lie~~   37 (499)
T PTZ00052          5 MYDLVVIGGGSGGMAAAKEAAAH-GKKVALFDYV   37 (499)
T ss_pred             ccCEEEECCCHHHHHHHHHHHhC-CCeEEEEecc
Confidence            58999999999999999999999 9999999974

>TIGR01789 lycopene_cycl lycopene cyclase

Probab=97.63  E-value=5.5e-05  Score=83.47  Aligned_cols=35  Identities=40%  Similarity=0.620  Sum_probs=31.5

Q ss_pred             cEEEECCcHHHHHHHHHHHhc-CCCcEEEEccCCCC
Q psy14408        435 DIIIVGASAAGCVLANRLSEV-SSLKVLLIEAGGDT  469 (720)
Q Consensus       435 DVVIIGSGiAGLvAA~~LAea-~G~KVLVLEKG~~~  469 (720)
                      ||||||||++||++|++|+++ .|++|+|||++...
T Consensus         1 DviIvGaG~AGl~lA~~L~~~~~g~~V~lle~~~~~   36 (370)
T TIGR01789         1 DCIIVGGGLAGGLIALRLQRARPDFRIRVIEAGRTI   36 (370)
T ss_pred             CEEEECccHHHHHHHHHHHhcCCCCeEEEEeCCCCC
Confidence            899999999999999999974 59999999998643

This model represents a family of bacterial lycopene cyclases catalyzing the transformation of lycopene to carotene. These enzymes are found in a limited spectrum of alpha and gamma proteobacteria as well as Flavobacterium.

>PRK13512 coenzyme A disulfide reductase; Provisional

Probab=97.63  E-value=0.00095  Score=75.11  Aligned_cols=59  Identities=14%  Similarity=0.142  Sum_probs=42.9

Q ss_pred             HHHHHHhcCCCeEEEcCeEEEEEEEccCCcEEEEEEEecCCcEEEEEcCcEEEEccCCcchHHHHHHcCCC
Q psy14408        639 YLTPIAGKRTNLYVLKRSKVTKVIINDQNVATGVEYVNSKGETVRVTANKEVILTAGAIANAQLLLLSGIG  709 (720)
Q Consensus       639 ~L~~Aa~e~aGVkIi~gt~VtkIl~e~gGrAtGV~v~dt~G~e~tIkAkK~VVVAAGa~~Sp~LLl~SGIg  709 (720)
                      .+.+.+ ++.|++++.+++|++|..   .   .|++.+  |+  ++.++ .||+|+|......+|..+|+.
T Consensus       194 ~l~~~l-~~~gI~i~~~~~v~~i~~---~---~v~~~~--g~--~~~~D-~vl~a~G~~pn~~~l~~~gl~  252 (438)
T PRK13512        194 PILDEL-DKREIPYRLNEEIDAING---N---EVTFKS--GK--VEHYD-MIIEGVGTHPNSKFIESSNIK  252 (438)
T ss_pred             HHHHHH-HhcCCEEEECCeEEEEeC---C---EEEECC--CC--EEEeC-EEEECcCCCcChHHHHhcCcc
Confidence            344444 578999999999999852   1   344433  54  57888 599999987777788888764

>PLN02546 glutathione reductase

Probab=97.60  E-value=5.7e-05  Score=87.88  Aligned_cols=34  Identities=21%  Similarity=0.261  Sum_probs=32.1

Q ss_pred             CCcccEEEECCcHHHHHHHHHHHhcCCCcEEEEcc
Q psy14408        431 GDCFDIIIVGASAAGCVLANRLSEVSSLKVLLIEA  465 (720)
Q Consensus       431 d~eyDVVIIGSGiAGLvAA~~LAea~G~KVLVLEK  465 (720)
                      ..+|||||||||.+|..||..||+. |+||+|+|+
T Consensus        77 ~~~yDvvVIG~GpaG~~aA~~aa~~-G~~V~liE~  110 (558)
T PLN02546         77 HYDFDLFTIGAGSGGVRASRFASNF-GASAAVCEL  110 (558)
T ss_pred             cCCCCEEEECCCHHHHHHHHHHHHC-CCeEEEEec
Confidence            4568999999999999999999999 999999996

>PRK14727 putative mercuric reductase; Provisional

Probab=97.56  E-value=6.7e-05  Score=85.31  Aligned_cols=39  Identities=23%  Similarity=0.279  Sum_probs=34.8

Q ss_pred             CCCcccEEEECCcHHHHHHHHHHHhcCCCcEEEEccCCCC
Q psy14408        430 SGDCFDIIIVGASAAGCVLANRLSEVSSLKVLLIEAGGDT  469 (720)
Q Consensus       430 ~d~eyDVVIIGSGiAGLvAA~~LAea~G~KVLVLEKG~~~  469 (720)
                      +...+||||||||.+|+++|.+|++. |.+|+|+||+...
T Consensus        13 ~~~~~dvvvIG~G~aG~~~a~~~~~~-g~~v~~ie~~~~~   51 (479)
T PRK14727         13 SKLQLHVAIIGSGSAAFAAAIKAAEH-GARVTIIEGADVI   51 (479)
T ss_pred             CCCCCcEEEECCCHHHHHHHHHHHhC-CCeEEEEEccCcc
Confidence            33568999999999999999999999 9999999997544

>PTZ00449 104 kDa microneme/rhoptry antigen; Provisional

Probab=97.56  E-value=0.00066  Score=76.62  Aligned_cols=92  Identities=28%  Similarity=0.421  Sum_probs=77.6

Q ss_pred             CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCcccccccccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCcc
Q psy14408        131 NNPNSPFNPYNPSSVFNPKNIDSVFNPRNPDSPYYNQYQFLYSPLSPYNPRSLFSSQNPLSPLSPLNANSPYNPRNQISY  210 (720)
Q Consensus       131 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  210 (720)
                      ..|+.|-.|-.|.+|-.|++|.++..|+.|-||.        -|-.+.-|-|+--+++|.+|-+|.++..|-+|+.+-++
T Consensus       580 e~PK~Pk~PKdPksPK~PK~Prspq~P~~PkSPk--------~Pe~~d~PkSPK~PespksPKsP~sPqrP~SPkRPEsP  651 (943)
T PTZ00449        580 EFPKDPKHPKDPEEPKKPKRPRSAQRPTRPKSPK--------LPELLDIPKSPKRPESPKSPKRPPPPQRPSSPERPEGP  651 (943)
T ss_pred             CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC--------CcccccCCCCCCcccccCCCCCCCCCCCCCCCCCCCCC
Confidence            6678888888888888888888888888888888        67777777777778888888888888888888888888


Q ss_pred             cCCCCCCCCCCCCCCCCCCC
Q psy14408        211 YNIENPKSPYNIHNPESPLY  230 (720)
Q Consensus       211 ~~~~~~~~~~~~~~~~~~~~  230 (720)
                      -.|+.||+|-++-.|.+|-+
T Consensus       652 KiPesPK~PkSPKpP~dPKF  671 (943)
T PTZ00449        652 KIIKSPKPPKSPKPPFDPKF  671 (943)
T ss_pred             CCCCCCCCCCCCCCCCCCcc
Confidence            88999999999999988874

>PRK05335 tRNA (uracil-5-)-methyltransferase Gid; Reviewed

Probab=97.56  E-value=6.8e-05  Score=84.41  Aligned_cols=35  Identities=26%  Similarity=0.233  Sum_probs=32.1

Q ss_pred             ccEEEECCcHHHHHHHHHHHhcCCCcEEEEccCCCC
Q psy14408        434 FDIIIVGASAAGCVLANRLSEVSSLKVLLIEAGGDT  469 (720)
Q Consensus       434 yDVVIIGSGiAGLvAA~~LAea~G~KVLVLEKG~~~  469 (720)
                      -||||||||.+|+.||+.||++ |++|+|+|+....
T Consensus         3 ~dVvVIGGGlAGleAAlaLAr~-Gl~V~LiE~rp~~   37 (436)
T PRK05335          3 KPVNVIGAGLAGSEAAWQLAKR-GVPVELYEMRPVK   37 (436)
T ss_pred             CcEEEECCCHHHHHHHHHHHhC-CCcEEEEEccCcc
Confidence            3999999999999999999999 9999999986544

>PTZ00153 lipoamide dehydrogenase; Provisional

Probab=97.51  E-value=8.2e-05  Score=88.08  Aligned_cols=34  Identities=26%  Similarity=0.437  Sum_probs=32.2

Q ss_pred             CcccEEEECCcHHHHHHHHHHHhcCCCcEEEEccC
Q psy14408        432 DCFDIIIVGASAAGCVLANRLSEVSSLKVLLIEAG  466 (720)
Q Consensus       432 ~eyDVVIIGSGiAGLvAA~~LAea~G~KVLVLEKG  466 (720)
                      .+|||||||||.+|..||.++|+. |+||+|||++
T Consensus       115 ~~yDviVIG~G~gG~~aA~~aa~~-G~kV~lie~~  148 (659)
T PTZ00153        115 EEYDVGIIGCGVGGHAAAINAMER-GLKVIIFTGD  148 (659)
T ss_pred             ccCCEEEECCCHHHHHHHHHHHHC-CCcEEEEeCC
Confidence            478999999999999999999999 9999999975

>TIGR01423 trypano_reduc trypanothione-disulfide reductase

Probab=97.50  E-value=0.0001  Score=84.43  Aligned_cols=35  Identities=20%  Similarity=0.432  Sum_probs=31.7

Q ss_pred             CcccEEEECCcHHHHHHHHHHHhcCCCcEEEEccC
Q psy14408        432 DCFDIIIVGASAAGCVLANRLSEVSSLKVLLIEAG  466 (720)
Q Consensus       432 ~eyDVVIIGSGiAGLvAA~~LAea~G~KVLVLEKG  466 (720)
                      .+|||||||||.+|..||.++|+..|+||+||||+
T Consensus         2 ~~~DviVIG~G~~G~~aA~~aa~~~g~~V~lie~~   36 (486)
T TIGR01423         2 KAFDLVVIGAGSGGLEAGWNAATLYKKRVAVIDVQ   36 (486)
T ss_pred             CccCEEEECCChHHHHHHHHHHHhcCCEEEEEecc
Confidence            36899999999999999999999538999999984

Trypanothione, a glutathione-modified derivative of spermidine, is (in its reduced form) an important antioxidant found in trypanosomatids (Crithidia, Leishmania, Trypanosoma). This model describes trypanothione reductase, a possible antitrypanosomal drug target closely related to some forms of glutathione reductase.

>PLN02927 antheraxanthin epoxidase/zeaxanthin epoxidase

Probab=97.50  E-value=0.0001  Score=87.17  Aligned_cols=37  Identities=19%  Similarity=0.268  Sum_probs=33.9

Q ss_pred             CCCcccEEEECCcHHHHHHHHHHHhcCCCcEEEEccCC
Q psy14408        430 SGDCFDIIIVGASAAGCVLANRLSEVSSLKVLLIEAGG  467 (720)
Q Consensus       430 ~d~eyDVVIIGSGiAGLvAA~~LAea~G~KVLVLEKG~  467 (720)
                      .....+|||||||++||++|+.|+++ |++|+|+||..
T Consensus        78 ~~~~~~VlIVGgGIaGLalAlaL~r~-Gi~V~V~Er~~  114 (668)
T PLN02927         78 KKKKSRVLVAGGGIGGLVFALAAKKK-GFDVLVFEKDL  114 (668)
T ss_pred             ccCCCCEEEECCCHHHHHHHHHHHhc-CCeEEEEeccc
Confidence            35568999999999999999999999 99999999974

>TIGR02374 nitri_red_nirB nitrite reductase [NAD(P)H], large subunit

Probab=97.48  E-value=0.0011  Score=80.29  Aligned_cols=64  Identities=19%  Similarity=0.329  Sum_probs=48.0

Q ss_pred             HHHHHHHhcCCCeEEEcCeEEEEEEEccCCcEEEEEEEecCCcEEEEEcCcEEEEccCCcchHHHHHHcCCC
Q psy14408        638 AYLTPIAGKRTNLYVLKRSKVTKVIINDQNVATGVEYVNSKGETVRVTANKEVILTAGAIANAQLLLLSGIG  709 (720)
Q Consensus       638 a~L~~Aa~e~aGVkIi~gt~VtkIl~e~gGrAtGV~v~dt~G~e~tIkAkK~VVVAAGa~~Sp~LLl~SGIg  709 (720)
                      .++...+ ++.|++|++++.|++|..+  +++.+|++.+  |.  ++.++ .||+|+|......|+..+|+.
T Consensus       186 ~~l~~~l-~~~GV~v~~~~~v~~i~~~--~~~~~v~~~d--G~--~i~~D-~Vi~a~G~~Pn~~la~~~gl~  249 (785)
T TIGR02374       186 RLLQREL-EQKGLTFLLEKDTVEIVGA--TKADRIRFKD--GS--SLEAD-LIVMAAGIRPNDELAVSAGIK  249 (785)
T ss_pred             HHHHHHH-HHcCCEEEeCCceEEEEcC--CceEEEEECC--CC--EEEcC-EEEECCCCCcCcHHHHhcCCc
Confidence            3444444 5789999999999999744  4567777654  64  68898 699999987777777777764

>PLN02328 lysine-specific histone demethylase 1 homolog

Probab=97.43  E-value=0.00015  Score=87.38  Aligned_cols=41  Identities=27%  Similarity=0.391  Sum_probs=36.2

Q ss_pred             CCcccEEEECCcHHHHHHHHHHHhcCCCcEEEEccCCCCCCC
Q psy14408        431 GDCFDIIIVGASAAGCVLANRLSEVSSLKVLLIEAGGDTPIH  472 (720)
Q Consensus       431 d~eyDVVIIGSGiAGLvAA~~LAea~G~KVLVLEKG~~~~~s  472 (720)
                      ....+|||||||++||+||++|++. |++|+|||+....++.
T Consensus       236 ~~~~~v~IiGaG~aGl~aA~~L~~~-g~~v~v~E~~~r~GGr  276 (808)
T PLN02328        236 VEPANVVVVGAGLAGLVAARQLLSM-GFKVVVLEGRARPGGR  276 (808)
T ss_pred             CCCCCEEEECcCHHHHHHHHHHHHC-CCcEEEEeccccCCCc
Confidence            3456999999999999999999999 9999999998776544

>TIGR00137 gid_trmFO tRNA:m(5)U-54 methyltransferase

Probab=97.42  E-value=0.00013  Score=82.40  Aligned_cols=34  Identities=24%  Similarity=0.372  Sum_probs=31.6

Q ss_pred             ccEEEECCcHHHHHHHHHHHhcCCCcEEEEccCCC
Q psy14408        434 FDIIIVGASAAGCVLANRLSEVSSLKVLLIEAGGD  468 (720)
Q Consensus       434 yDVVIIGSGiAGLvAA~~LAea~G~KVLVLEKG~~  468 (720)
                      .||||||||.+|+.||+.||++ |++|+|+|+...
T Consensus         1 ~~VvVIGgGlAGleaA~~LAr~-G~~V~LiE~rp~   34 (433)
T TIGR00137         1 TPVHVIGGGLAGSEAAWQLAQA-GVPVILYEMRPE   34 (433)
T ss_pred             CCEEEECCCHHHHHHHHHHHhC-CCcEEEEecccc
Confidence            3899999999999999999999 999999998654

This model represents an orthologous set of proteins present in relatively few bacteria but very tightly conserved where it occurs. It is closely related to gidA (glucose-inhibited division protein A), which appears to be present in all complete eubacterial genomes so far and in Saccharomyces cerevisiae. It was designated gid but is now recognized as a tRNA:m(5)U-54 methyltransferase and is now designated trmFO.

>PF13454 NAD_binding_9: FAD-NAD(P)-binding

Probab=97.40  E-value=0.0053  Score=59.62  Aligned_cols=32  Identities=19%  Similarity=0.376  Sum_probs=27.8

Q ss_pred             EEECCcHHHHHHHHHHHhcC----CCcEEEEccCCC
Q psy14408        437 IIVGASAAGCVLANRLSEVS----SLKVLLIEAGGD  468 (720)
Q Consensus       437 VIIGSGiAGLvAA~~LAea~----G~KVLVLEKG~~  468 (720)
                      +|||+|++|+++|.+|++..    ..+|+|+|+...
T Consensus         1 AIIG~G~~G~~~l~~L~~~~~~~~~~~I~vfd~~~~   36 (156)
T PF13454_consen    1 AIIGGGPSGLAVLERLLRQADPKPPLEITVFDPSPF   36 (156)
T ss_pred             CEECcCHHHHHHHHHHHHhcCCCCCCEEEEEcCCCc
Confidence            59999999999999999873    578999999643

>COG1148 HdrA Heterodisulfide reductase, subunit A and related polyferredoxins [Energy production and conversion]

Probab=97.37  E-value=0.00016  Score=81.49  Aligned_cols=44  Identities=23%  Similarity=0.348  Sum_probs=38.0

Q ss_pred             ccCCCcccEEEECCcHHHHHHHHHHHhcCCCcEEEEccCCCCCCC
Q psy14408        428 VKSGDCFDIIIVGASAAGCVLANRLSEVSSLKVLLIEAGGDTPIH  472 (720)
Q Consensus       428 I~~d~eyDVVIIGSGiAGLvAA~~LAea~G~KVLVLEKG~~~~~s  472 (720)
                      +..+..-+|+|||||++|+.||+.||+. |++|.||||.+..++.
T Consensus       119 ~~~~v~~svLVIGGGvAGitAAl~La~~-G~~v~LVEKepsiGGr  162 (622)
T COG1148         119 IKVEVSKSVLVIGGGVAGITAALELADM-GFKVYLVEKEPSIGGR  162 (622)
T ss_pred             HHHhhccceEEEcCcHHHHHHHHHHHHc-CCeEEEEecCCccccc
Confidence            4444556999999999999999999999 9999999998777554

>KOG0405|consensus

Probab=97.34  E-value=0.0017  Score=70.88  Aligned_cols=36  Identities=28%  Similarity=0.390  Sum_probs=33.4

Q ss_pred             CCCcccEEEECCcHHHHHHHHHHHhcCCCcEEEEccC
Q psy14408        430 SGDCFDIIIVGASAAGCVLANRLSEVSSLKVLLIEAG  466 (720)
Q Consensus       430 ~d~eyDVVIIGSGiAGLvAA~~LAea~G~KVLVLEKG  466 (720)
                      ...+||.+|||||.+|+.+|++.|+. |.||.|+|..
T Consensus        17 ~~k~fDylvIGgGSGGvasARrAa~~-GAkv~l~E~~   52 (478)
T KOG0405|consen   17 DVKDFDYLVIGGGSGGVASARRAASH-GAKVALCELP   52 (478)
T ss_pred             cccccceEEEcCCcchhHHhHHHHhc-CceEEEEecC
Confidence            34589999999999999999999999 9999999987

>PRK04965 NADH:flavorubredoxin oxidoreductase; Provisional

Probab=97.33  E-value=0.0026  Score=69.94  Aligned_cols=58  Identities=17%  Similarity=0.224  Sum_probs=42.6

Q ss_pred             cCCCeEEEcCeEEEEEEEccCCcEEEEEEEecCCcEEEEEcCcEEEEccCCcchHHHHHHcCCCC
Q psy14408        646 KRTNLYVLKRSKVTKVIINDQNVATGVEYVNSKGETVRVTANKEVILTAGAIANAQLLLLSGIGP  710 (720)
Q Consensus       646 e~aGVkIi~gt~VtkIl~e~gGrAtGV~v~dt~G~e~tIkAkK~VVVAAGa~~Sp~LLl~SGIgp  710 (720)
                      ++.|++++.++.|++|..+ ++. ..|++.  +|+  ++.++ .||+|+|......++..+|+.-
T Consensus       194 ~~~gV~i~~~~~v~~i~~~-~~~-~~v~~~--~g~--~i~~D-~vI~a~G~~p~~~l~~~~gl~~  251 (377)
T PRK04965        194 TEMGVHLLLKSQLQGLEKT-DSG-IRATLD--SGR--SIEVD-AVIAAAGLRPNTALARRAGLAV  251 (377)
T ss_pred             HhCCCEEEECCeEEEEEcc-CCE-EEEEEc--CCc--EEECC-EEEECcCCCcchHHHHHCCCCc
Confidence            3679999999999999865 332 234443  353  68898 5999999877777888888753

>PRK06912 acoL dihydrolipoamide dehydrogenase; Validated

Probab=97.25  E-value=0.00029  Score=79.62  Aligned_cols=34  Identities=24%  Similarity=0.367  Sum_probs=31.6

Q ss_pred             cEEEECCcHHHHHHHHHHHhcCCCcEEEEccCCCC
Q psy14408        435 DIIIVGASAAGCVLANRLSEVSSLKVLLIEAGGDT  469 (720)
Q Consensus       435 DVVIIGSGiAGLvAA~~LAea~G~KVLVLEKG~~~  469 (720)
                      +|||||||.+|++||.+|++. |++|+||||+...
T Consensus         2 ~vvVIG~G~aG~~aA~~~~~~-g~~V~lie~~~~G   35 (458)
T PRK06912          2 KLVVIGGGPAGYVAAITAAQN-GKNVTLIDEADLG   35 (458)
T ss_pred             eEEEECCCHHHHHHHHHHHhC-CCcEEEEECCccc
Confidence            799999999999999999999 9999999997543

>PF00070 Pyr_redox: Pyridine nucleotide-disulphide oxidoreductase; InterPro: IPR001327 FAD flavoproteins belonging to the family of pyridine nucleotide-disulphide oxidoreductases (glutathione reductase, trypanothione reductase, lipoamide dehydrogenase, mercuric reductase, thioredoxin reductase, alkyl hydroperoxide reductase) share sequence similarity with a number of other flavoprotein oxidoreductases, in particular with ferredoxin-NAD+ reductases involved in oxidative metabolism of a variety of hydrocarbons (rubredoxin reductase, putidaredoxin reductase, terpredoxin reductase, ferredoxin-NAD+ reductase components of benzene 1,2-dioxygenase, toluene 1,2-dioxygenase, chlorobenzene dioxygenase, biphenyl dioxygenase), NADH oxidase and NADH peroxidase [, , ]

Probab=97.21  E-value=0.00048  Score=59.28  Aligned_cols=33  Identities=30%  Similarity=0.497  Sum_probs=31.0

Q ss_pred             EEEECCcHHHHHHHHHHHhcCCCcEEEEccCCCC
Q psy14408        436 IIIVGASAAGCVLANRLSEVSSLKVLLIEAGGDT  469 (720)
Q Consensus       436 VVIIGSGiAGLvAA~~LAea~G~KVLVLEKG~~~  469 (720)
                      |+|||||..|+-+|..|++. |.+|+|||+++..
T Consensus         2 vvViGgG~ig~E~A~~l~~~-g~~vtli~~~~~~   34 (80)
T PF00070_consen    2 VVVIGGGFIGIELAEALAEL-GKEVTLIERSDRL   34 (80)
T ss_dssp             EEEESSSHHHHHHHHHHHHT-TSEEEEEESSSSS
T ss_pred             EEEECcCHHHHHHHHHHHHh-CcEEEEEeccchh
Confidence            79999999999999999999 9999999999654

Comparison of the crystal structures of human glutathione reductase and Escherichia coli thioredoxin reductase reveals different locations of their active sites, suggesting that the enzymes diverged from an ancestral FAD/NAD(P)H reductase and acquired their disulphide reductase activities independently []. Despite functional similarities, oxidoreductases of this family show no sequence similarity with adrenodoxin reductases [] and flavoprotein pyridine nucleotide cytochrome reductases (FPNCR) []. Assuming that disulphide reductase activity emerged later, during divergent evolution, the family can be referred to as FAD-dependent pyridine nucleotide reductases, FADPNR. To date, 3D structures of glutathione reductase [], thioredoxin reductase [], mercuric reductase [], lipoamide dehydrogenase [], trypanothione reductase [] and NADH peroxidase [] have been solved. The enzymes share similar tertiary structures based on a doubly-wound alpha/beta fold, but the relative orientations of their FAD- and NAD(P)H-binding domains may vary significantly. By contrast with the FPNCR family, the folds of the FAD- and NAD(P)H-binding domains are similar, suggesting that the domains evolved by gene duplication []. This entry describes a small NADH binding domain within a larger FAD binding domain described by IPR023753 from INTERPRO. It is found in both class I and class II oxidoreductases. ; GO: 0016491 oxidoreductase activity, 0050660 flavin adenine dinucleotide binding, 0055114 oxidation-reduction process; PDB: 1ZKQ_A 3DGZ_A 1ZDL_A 2R9Z_B 2RAB_A 2A87_B 1M6I_A 2YVG_A 2GR1_A 2GQW_A ....

>KOG0685|consensus

Probab=97.18  E-value=0.00038  Score=78.47  Aligned_cols=43  Identities=33%  Similarity=0.394  Sum_probs=36.6

Q ss_pred             CCCcccEEEECCcHHHHHHHHHHHhcCCCcEEEEccCCCCCCC
Q psy14408        430 SGDCFDIIIVGASAAGCVLANRLSEVSSLKVLLIEAGGDTPIH  472 (720)
Q Consensus       430 ~d~eyDVVIIGSGiAGLvAA~~LAea~G~KVLVLEKG~~~~~s  472 (720)
                      ...+.-|||||||++||+||.+|-+..+..|+|+|+.++.++.
T Consensus        18 ~~~~~kIvIIGAG~AGLaAA~rLle~gf~~~~IlEa~dRIGGR   60 (498)
T KOG0685|consen   18 ARGNAKIVIIGAGIAGLAAATRLLENGFIDVLILEASDRIGGR   60 (498)
T ss_pred             ccCCceEEEECCchHHHHHHHHHHHhCCceEEEEEeccccCce
Confidence            3445589999999999999999998746789999999888665

>PRK07818 dihydrolipoamide dehydrogenase; Reviewed

Probab=97.16  E-value=0.0028  Score=71.78  Aligned_cols=32  Identities=31%  Similarity=0.408  Sum_probs=30.3

Q ss_pred             cEEEECCcHHHHHHHHHHHhcCCCcEEEEccCC
Q psy14408        435 DIIIVGASAAGCVLANRLSEVSSLKVLLIEAGG  467 (720)
Q Consensus       435 DVVIIGSGiAGLvAA~~LAea~G~KVLVLEKG~  467 (720)
                      .|+|||+|..|+-+|..|++. |.+|+|+|+++
T Consensus       174 ~vvVIGgG~ig~E~A~~l~~~-G~~Vtlv~~~~  205 (466)
T PRK07818        174 SIVIAGAGAIGMEFAYVLKNY-GVDVTIVEFLD  205 (466)
T ss_pred             eEEEECCcHHHHHHHHHHHHc-CCeEEEEecCC
Confidence            899999999999999999999 99999999873

>KOG0404|consensus

Probab=97.14  E-value=0.0018  Score=67.18  Aligned_cols=64  Identities=16%  Similarity=0.248  Sum_probs=51.5

Q ss_pred             HHHHHHHhcCCCeEEEcCeEEEEEEEccCCcEEEEEEEec-CCcEEEEEcCcEEEEccCCcchHHHHH
Q psy14408        638 AYLTPIAGKRTNLYVLKRSKVTKVIINDQNVATGVEYVNS-KGETVRVTANKEVILTAGAIANAQLLL  704 (720)
Q Consensus       638 a~L~~Aa~e~aGVkIi~gt~VtkIl~e~gGrAtGV~v~dt-~G~e~tIkAkK~VVVAAGa~~Sp~LLl  704 (720)
                      .+.+++. +..+++++.++.+.+..-+ ++.+.|+++++. .|++..+..+ .++.+-|.-.+..+|.
T Consensus       197 ~Mq~ra~-~npnI~v~~nt~~~ea~gd-~~~l~~l~ikn~~tge~~dl~v~-GlFf~IGH~Pat~~l~  261 (322)
T KOG0404|consen  197 IMQQRAE-KNPNIEVLYNTVAVEALGD-GKLLNGLRIKNVKTGEETDLPVS-GLFFAIGHSPATKFLK  261 (322)
T ss_pred             HHHHHHh-cCCCeEEEechhhhhhccC-cccccceEEEecccCcccccccc-eeEEEecCCchhhHhc
Confidence            4566666 6779999999999999877 778889998876 5777788887 5999999877777665

>PTZ00449 104 kDa microneme/rhoptry antigen; Provisional

Probab=97.09  E-value=0.0026  Score=72.03  Aligned_cols=94  Identities=28%  Similarity=0.362  Sum_probs=53.1

Q ss_pred             CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCcccccccccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCcccC
Q psy14408        133 PNSPFNPYNPSSVFNPKNIDSVFNPRNPDSPYYNQYQFLYSPLSPYNPRSLFSSQNPLSPLSPLNANSPYNPRNQISYYN  212 (720)
Q Consensus       133 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  212 (720)
                      ++.|.-|-.|..|-.|++|-.|-.|++|-.|+        +|-||.-|-.+-.+.+|--|-+|.++-+|.+|+.+-|+..
T Consensus       576 SK~Pe~PK~Pk~PKdPksPK~PK~Prspq~P~--------~PkSPk~Pe~~d~PkSPK~PespksPKsP~sPqrP~SPkR  647 (943)
T PTZ00449        576 SKKPEFPKDPKHPKDPEEPKKPKRPRSAQRPT--------RPKSPKLPELLDIPKSPKRPESPKSPKRPPPPQRPSSPER  647 (943)
T ss_pred             ccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC--------CCCCCCCcccccCCCCCCcccccCCCCCCCCCCCCCCCCC
Confidence            34555555555555555555555555555555        5555555555555555555555566666666666666666


Q ss_pred             CCCCCCCCCCCCCCCCCCCCCc
Q psy14408        213 IENPKSPYNIHNPESPLYSDSP  234 (720)
Q Consensus       213 ~~~~~~~~~~~~~~~~~~~~~~  234 (720)
                      +++|+.|-++-.|.||----+|
T Consensus       648 PEsPKiPesPK~PkSPKpP~dP  669 (943)
T PTZ00449        648 PEGPKIIKSPKPPKSPKPPFDP  669 (943)
T ss_pred             CCCCCCCCCCCCCCCCCCCCCC
Confidence            6666666666655555544444

>TIGR02053 MerA mercuric reductase

Probab=97.08  E-value=0.0033  Score=71.09  Aligned_cols=32  Identities=19%  Similarity=0.450  Sum_probs=30.4

Q ss_pred             cEEEECCcHHHHHHHHHHHhcCCCcEEEEccCC
Q psy14408        435 DIIIVGASAAGCVLANRLSEVSSLKVLLIEAGG  467 (720)
Q Consensus       435 DVVIIGSGiAGLvAA~~LAea~G~KVLVLEKG~  467 (720)
                      .|+|||+|..|+-+|..|++. |.+|+|+|+++
T Consensus       168 ~vvIIGgG~~g~E~A~~l~~~-g~~Vtli~~~~  199 (463)
T TIGR02053       168 SLAVIGGGAIGVELAQAFARL-GSEVTILQRSD  199 (463)
T ss_pred             eEEEECCCHHHHHHHHHHHHc-CCcEEEEEcCC
Confidence            899999999999999999999 99999999873

This model represents the mercuric reductase found in the mer operon for the detoxification of mercury compounds. MerA is a FAD-containing flavoprotein which reduces Hg(II) to Hg(0) utilizing NADPH.

>PRK05976 dihydrolipoamide dehydrogenase; Validated

Probab=97.06  E-value=0.0046  Score=70.21  Aligned_cols=32  Identities=28%  Similarity=0.518  Sum_probs=30.5

Q ss_pred             cEEEECCcHHHHHHHHHHHhcCCCcEEEEccCC
Q psy14408        435 DIIIVGASAAGCVLANRLSEVSSLKVLLIEAGG  467 (720)
Q Consensus       435 DVVIIGSGiAGLvAA~~LAea~G~KVLVLEKG~  467 (720)
                      .|+|||||.+|+-+|..|++. |.+|+|||++.
T Consensus       182 ~vvIIGgG~~G~E~A~~l~~~-g~~Vtli~~~~  213 (472)
T PRK05976        182 SLVIVGGGVIGLEWASMLADF-GVEVTVVEAAD  213 (472)
T ss_pred             EEEEECCCHHHHHHHHHHHHc-CCeEEEEEecC
Confidence            899999999999999999999 99999999873

>KOG1276|consensus

Probab=97.01  E-value=0.0007  Score=75.55  Aligned_cols=45  Identities=18%  Similarity=0.228  Sum_probs=37.0

Q ss_pred             cccCCCcccEEEECCcHHHHHHHHHHHhcCCCc--EEEEccCCCCCCC
Q psy14408        427 YVKSGDCFDIIIVGASAAGCVLANRLSEVSSLK--VLLIEAGGDTPIH  472 (720)
Q Consensus       427 ~I~~d~eyDVVIIGSGiAGLvAA~~LAea~G~K--VLVLEKG~~~~~s  472 (720)
                      .++.....+|+|||||++||++|++|+++ +-+  |+|+|+.++.++.
T Consensus         5 ~~~~~~~~~vaVvGGGiSGL~aay~L~r~-~p~~~i~l~Ea~~RvGGw   51 (491)
T KOG1276|consen    5 QIEAVSGMTVAVVGGGISGLCAAYYLARL-GPDVTITLFEASPRVGGW   51 (491)
T ss_pred             cccceecceEEEECCchhHHHHHHHHHhc-CCCceEEEEecCCcccce
Confidence            35555667999999999999999999998 555  5669999887655

>PRK06327 dihydrolipoamide dehydrogenase; Validated

Probab=97.00  E-value=0.0051  Score=70.00  Aligned_cols=32  Identities=22%  Similarity=0.349  Sum_probs=30.3

Q ss_pred             cEEEECCcHHHHHHHHHHHhcCCCcEEEEccCC
Q psy14408        435 DIIIVGASAAGCVLANRLSEVSSLKVLLIEAGG  467 (720)
Q Consensus       435 DVVIIGSGiAGLvAA~~LAea~G~KVLVLEKG~  467 (720)
                      .|+|||+|..|+-+|..|++. |.+|+|+|+++
T Consensus       185 ~vvVvGgG~~g~E~A~~l~~~-g~~Vtli~~~~  216 (475)
T PRK06327        185 KLAVIGAGVIGLELGSVWRRL-GAEVTILEALP  216 (475)
T ss_pred             eEEEECCCHHHHHHHHHHHHc-CCeEEEEeCCC
Confidence            899999999999999999999 99999999873

>PRK12814 putative NADPH-dependent glutamate synthase small subunit; Provisional

Probab=97.00  E-value=0.00075  Score=80.00  Aligned_cols=37  Identities=24%  Similarity=0.271  Sum_probs=33.7

Q ss_pred             cccEEEECCcHHHHHHHHHHHhcCCCcEEEEccCCCCC
Q psy14408        433 CFDIIIVGASAAGCVLANRLSEVSSLKVLLIEAGGDTP  470 (720)
Q Consensus       433 eyDVVIIGSGiAGLvAA~~LAea~G~KVLVLEKG~~~~  470 (720)
                      ..+|+|||||.+|+++|+.|++. |++|+|+|+....+
T Consensus       193 ~k~VaIIGaGpAGl~aA~~La~~-G~~Vtv~e~~~~~G  229 (652)
T PRK12814        193 GKKVAIIGAGPAGLTAAYYLLRK-GHDVTIFDANEQAG  229 (652)
T ss_pred             CCEEEEECCCHHHHHHHHHHHHC-CCcEEEEecCCCCC
Confidence            35999999999999999999999 99999999986653

>KOG4716|consensus

Probab=96.99  E-value=0.00052  Score=74.57  Aligned_cols=37  Identities=22%  Similarity=0.361  Sum_probs=33.5

Q ss_pred             cCCCcccEEEECCcHHHHHHHHHHHhcCCCcEEEEccC
Q psy14408        429 KSGDCFDIIIVGASAAGCVLANRLSEVSSLKVLLIEAG  466 (720)
Q Consensus       429 ~~d~eyDVVIIGSGiAGLvAA~~LAea~G~KVLVLEKG  466 (720)
                      ...-+||.||||||.+||+||.++|.. |.||++||--
T Consensus        15 ~~sydyDLIviGgGSgGLacaKeAa~~-G~kV~~lDfV   51 (503)
T KOG4716|consen   15 FSSYDYDLIVIGGGSGGLACAKEAADL-GAKVACLDFV   51 (503)
T ss_pred             cccCCccEEEEcCCcchhhHHHHHHhc-CCcEEEEeec
Confidence            345679999999999999999999999 9999999964

>PLN03000 amine oxidase

Probab=96.99  E-value=0.00077  Score=81.72  Aligned_cols=40  Identities=25%  Similarity=0.320  Sum_probs=36.1

Q ss_pred             CcccEEEECCcHHHHHHHHHHHhcCCCcEEEEccCCCCCCC
Q psy14408        432 DCFDIIIVGASAAGCVLANRLSEVSSLKVLLIEAGGDTPIH  472 (720)
Q Consensus       432 ~eyDVVIIGSGiAGLvAA~~LAea~G~KVLVLEKG~~~~~s  472 (720)
                      ...||||||||++||+||..|++. |++|+|||+....++.
T Consensus       183 ~~~~VvIIGaG~aGL~aA~~L~~~-G~~V~VlE~~~riGGR  222 (881)
T PLN03000        183 SKSSVVIVGAGLSGLAAARQLMRF-GFKVTVLEGRKRPGGR  222 (881)
T ss_pred             CCCCEEEECccHHHHHHHHHHHHC-CCcEEEEEccCcCCCC
Confidence            356999999999999999999999 9999999998877654

>PLN02852 ferredoxin-NADP+ reductase

Probab=96.95  E-value=0.0011  Score=76.26  Aligned_cols=38  Identities=24%  Similarity=0.233  Sum_probs=33.5

Q ss_pred             cccEEEECCcHHHHHHHHHHHh--cCCCcEEEEccCCCCCC
Q psy14408        433 CFDIIIVGASAAGCVLANRLSE--VSSLKVLLIEAGGDTPI  471 (720)
Q Consensus       433 eyDVVIIGSGiAGLvAA~~LAe--a~G~KVLVLEKG~~~~~  471 (720)
                      ..+|+|||||++|+.||..|++  . |++|+|+||...+.+
T Consensus        26 ~~~VaIVGaGPAGl~AA~~L~~~~~-g~~Vtv~E~~p~pgG   65 (491)
T PLN02852         26 PLHVCVVGSGPAGFYTADKLLKAHD-GARVDIIERLPTPFG   65 (491)
T ss_pred             CCcEEEECccHHHHHHHHHHHhhCC-CCeEEEEecCCCCcc
Confidence            4589999999999999999997  5 999999999876543

>PRK07846 mycothione reductase; Reviewed

Probab=96.94  E-value=0.00084  Score=76.00  Aligned_cols=62  Identities=23%  Similarity=0.293  Sum_probs=41.0

Q ss_pred             HHHHHHhcCCCeEEEcCeEEEEEEEccCCcEEEEEEEecCCcEEEEEcCcEEEEccCCcchHHHH--HHcCCC
Q psy14408        639 YLTPIAGKRTNLYVLKRSKVTKVIINDQNVATGVEYVNSKGETVRVTANKEVILTAGAIANAQLL--LLSGIG  709 (720)
Q Consensus       639 ~L~~Aa~e~aGVkIi~gt~VtkIl~e~gGrAtGV~v~dt~G~e~tIkAkK~VVVAAGa~~Sp~LL--l~SGIg  709 (720)
                      .+....  +.|++++++++|++|..+ ++.   +.+...+|+  ++.++ .||+|+|......+|  ...|+.
T Consensus       212 ~l~~l~--~~~v~i~~~~~v~~i~~~-~~~---v~v~~~~g~--~i~~D-~vl~a~G~~pn~~~l~~~~~gl~  275 (451)
T PRK07846        212 RFTELA--SKRWDVRLGRNVVGVSQD-GSG---VTLRLDDGS--TVEAD-VLLVATGRVPNGDLLDAAAAGVD  275 (451)
T ss_pred             HHHHHH--hcCeEEEeCCEEEEEEEc-CCE---EEEEECCCc--EeecC-EEEEEECCccCccccCchhcCce
Confidence            344444  568999999999999865 432   333322353  68898 599999987666653  445553

>TIGR01292 TRX_reduct thioredoxin-disulfide reductase

Probab=96.91  E-value=0.015  Score=60.64  Aligned_cols=31  Identities=23%  Similarity=0.338  Sum_probs=29.8

Q ss_pred             cEEEECCcHHHHHHHHHHHhcCCCcEEEEccC
Q psy14408        435 DIIIVGASAAGCVLANRLSEVSSLKVLLIEAG  466 (720)
Q Consensus       435 DVVIIGSGiAGLvAA~~LAea~G~KVLVLEKG  466 (720)
                      .|+|||+|..|+-+|..|++. |.+|++++++
T Consensus       143 ~v~ViG~G~~~~e~a~~l~~~-~~~V~~v~~~  173 (300)
T TIGR01292       143 EVAVVGGGDSAIEEALYLTRI-AKKVTLVHRR  173 (300)
T ss_pred             EEEEECCChHHHHHHHHHHhh-cCEEEEEEeC
Confidence            899999999999999999998 9999999987

This model describes thioredoxin-disulfide reductase, a member of the pyridine nucleotide-disulphide oxidoreductases (PFAM:PF00070).

>PRK08255 salicylyl-CoA 5-hydroxylase; Reviewed

Probab=96.91  E-value=0.00082  Score=81.07  Aligned_cols=35  Identities=20%  Similarity=0.303  Sum_probs=31.5

Q ss_pred             cEEEECCcHHHHHHHHHHHhc-CCCcEEEEccCCCC
Q psy14408        435 DIIIVGASAAGCVLANRLSEV-SSLKVLLIEAGGDT  469 (720)
Q Consensus       435 DVVIIGSGiAGLvAA~~LAea-~G~KVLVLEKG~~~  469 (720)
                      +|+|||||++||++|+.|++. .|++|+||||....
T Consensus         2 ~V~IIGaGpAGLaaAi~L~~~~~G~~V~vlEr~~~~   37 (765)
T PRK08255          2 RIVCIGGGPAGLYFALLMKLLDPAHEVTVVERNRPY   37 (765)
T ss_pred             eEEEECCCHHHHHHHHHHHHhCCCCeEEEEecCCCC
Confidence            799999999999999999996 37999999998653

>PRK12770 putative glutamate synthase subunit beta; Provisional

Probab=96.90  E-value=0.001  Score=72.57  Aligned_cols=36  Identities=22%  Similarity=0.273  Sum_probs=33.2

Q ss_pred             ccEEEECCcHHHHHHHHHHHhcCCCcEEEEccCCCCC
Q psy14408        434 FDIIIVGASAAGCVLANRLSEVSSLKVLLIEAGGDTP  470 (720)
Q Consensus       434 yDVVIIGSGiAGLvAA~~LAea~G~KVLVLEKG~~~~  470 (720)
                      .+|||||+|++|+.+|..|++. |++|+|+|+....+
T Consensus        19 ~~VvIIG~G~aGl~aA~~l~~~-g~~v~lie~~~~~g   54 (352)
T PRK12770         19 KKVAIIGAGPAGLAAAGYLACL-GYEVHVYDKLPEPG   54 (352)
T ss_pred             CEEEEECcCHHHHHHHHHHHHC-CCcEEEEeCCCCCC
Confidence            3999999999999999999999 99999999987654

>TIGR03452 mycothione_red mycothione reductase

Probab=96.81  E-value=0.0012  Score=74.83  Aligned_cols=62  Identities=23%  Similarity=0.321  Sum_probs=40.2

Q ss_pred             HHHHHHhcCCCeEEEcCeEEEEEEEccCCcEEEEEEEecCCcEEEEEcCcEEEEccCCcchHHH--HHHcCCC
Q psy14408        639 YLTPIAGKRTNLYVLKRSKVTKVIINDQNVATGVEYVNSKGETVRVTANKEVILTAGAIANAQL--LLLSGIG  709 (720)
Q Consensus       639 ~L~~Aa~e~aGVkIi~gt~VtkIl~e~gGrAtGV~v~dt~G~e~tIkAkK~VVVAAGa~~Sp~L--Ll~SGIg  709 (720)
                      .+....  +.|+++++++.|++|..+ ++.+ .|++  .+|+  ++.++ .||+|+|......+  +...|+.
T Consensus       215 ~l~~~~--~~gI~i~~~~~V~~i~~~-~~~v-~v~~--~~g~--~i~~D-~vl~a~G~~pn~~~l~~~~~gl~  278 (452)
T TIGR03452       215 RFTEIA--KKKWDIRLGRNVTAVEQD-GDGV-TLTL--DDGS--TVTAD-VLLVATGRVPNGDLLDAEAAGVE  278 (452)
T ss_pred             HHHHHH--hcCCEEEeCCEEEEEEEc-CCeE-EEEE--cCCC--EEEcC-EEEEeeccCcCCCCcCchhcCee
Confidence            344444  468999999999999876 4332 2333  2353  68898 59999997655554  3344543

Mycothiol, a glutathione analog in Mycobacterium tuberculosis and related species, can form a disulfide-linked dimer called mycothione. This enzyme can reduce mycothione to regenerate two mycothiol molecules. The enzyme shows some sequence similarity to glutathione-disulfide reductase, trypanothione-disulfide reductase, and dihydrolipoamide dehydrogenase. The characterized protein from M. tuberculosis, a homodimer, has FAD as a cofactor, one per monomer, and uses NADPH as a substrate.

>PRK06567 putative bifunctional glutamate synthase subunit beta/2-polyprenylphenol hydroxylase; Validated

Probab=96.80  E-value=0.0012  Score=80.86  Aligned_cols=34  Identities=24%  Similarity=0.333  Sum_probs=31.7

Q ss_pred             cccEEEECCcHHHHHHHHHHHhcCCCcEEEEccCC
Q psy14408        433 CFDIIIVGASAAGCVLANRLSEVSSLKVLLIEAGG  467 (720)
Q Consensus       433 eyDVVIIGSGiAGLvAA~~LAea~G~KVLVLEKG~  467 (720)
                      ...|+|||||++|++||++|+++ |++|+|+|+..
T Consensus       383 gKKVaVVGaGPAGLsAA~~La~~-Gh~Vtv~E~~~  416 (1028)
T PRK06567        383 NYNILVTGLGPAGFSLSYYLLRS-GHNVTAIDGLK  416 (1028)
T ss_pred             CCeEEEECcCHHHHHHHHHHHhC-CCeEEEEcccc
Confidence            45899999999999999999999 99999999864

>TIGR03385 CoA_CoA_reduc CoA-disulfide reductase

Probab=96.80  E-value=0.014  Score=65.12  Aligned_cols=54  Identities=20%  Similarity=0.252  Sum_probs=40.5

Q ss_pred             CCCeEEEcCeEEEEEEEccCCcEEEEEEEecCCcEEEEEcCcEEEEccCCcchHHHHHHcCCC
Q psy14408        647 RTNLYVLKRSKVTKVIINDQNVATGVEYVNSKGETVRVTANKEVILTAGAIANAQLLLLSGIG  709 (720)
Q Consensus       647 ~aGVkIi~gt~VtkIl~e~gGrAtGV~v~dt~G~e~tIkAkK~VVVAAGa~~Sp~LLl~SGIg  709 (720)
                      +.|++++.++.|++|..+  +++  +.+.  +|+  ++.++ .||+|+|......+|..+|+.
T Consensus       191 ~~gV~v~~~~~v~~i~~~--~~~--v~~~--~g~--~i~~D-~vi~a~G~~p~~~~l~~~gl~  244 (427)
T TIGR03385       191 KHEINLRLNEEVDSIEGE--ERV--KVFT--SGG--VYQAD-MVILATGIKPNSELAKDSGLK  244 (427)
T ss_pred             HcCCEEEeCCEEEEEecC--CCE--EEEc--CCC--EEEeC-EEEECCCccCCHHHHHhcCcc
Confidence            669999999999999754  332  3333  354  68898 599999988777888888765

Members of this protein family are CoA-disulfide reductase (EC 1.8.1.14), as characterized in Staphylococcus aureus, Pyrococcus horikoshii, and Borrelia burgdorferi, and inferred in several other species on the basis of high levels of CoA and an absence of glutathione as a protective thiol.

>TIGR01317 GOGAT_sm_gam glutamate synthases, NADH/NADPH, small subunit

Probab=96.76  E-value=0.0015  Score=74.70  Aligned_cols=36  Identities=22%  Similarity=0.332  Sum_probs=33.3

Q ss_pred             ccEEEECCcHHHHHHHHHHHhcCCCcEEEEccCCCCC
Q psy14408        434 FDIIIVGASAAGCVLANRLSEVSSLKVLLIEAGGDTP  470 (720)
Q Consensus       434 yDVVIIGSGiAGLvAA~~LAea~G~KVLVLEKG~~~~  470 (720)
                      .+|+|||||.+|+.||..|++. |++|+|+|+....+
T Consensus       144 ~~V~IIGaG~aGl~aA~~L~~~-g~~V~v~e~~~~~g  179 (485)
T TIGR01317       144 KKVAVVGSGPAGLAAADQLNRA-GHTVTVFEREDRCG  179 (485)
T ss_pred             CEEEEECCcHHHHHHHHHHHHc-CCeEEEEecCCCCC
Confidence            5999999999999999999999 99999999987553

This model represents one of three built for the NADPH-dependent or NADH-dependent glutamate synthase (EC 1.4.1.13 and 1.4.1.14, respectively) small subunit or homologous region. TIGR01316 describes a family in several archaeal and deeply branched bacterial lineages of a homotetrameric form for which there is no large subunit. Another model describes glutamate synthase small subunit from gamma and some alpha subdivision Proteobacteria plus paralogs of unknown function. This model describes the small subunit, or homologous region of longer forms proteins, of eukaryotes, Gram-positive bacteria, cyanobacteria, and some other lineages. All members with known function participate in NADH or NADPH-dependent reactions to interconvert between glutamine plus 2-oxoglutarate and two molecules of glutamate.

>PRK06912 acoL dihydrolipoamide dehydrogenase; Validated

Probab=96.72  E-value=0.011  Score=67.04  Aligned_cols=32  Identities=31%  Similarity=0.583  Sum_probs=30.2

Q ss_pred             cEEEECCcHHHHHHHHHHHhcCCCcEEEEccCC
Q psy14408        435 DIIIVGASAAGCVLANRLSEVSSLKVLLIEAGG  467 (720)
Q Consensus       435 DVVIIGSGiAGLvAA~~LAea~G~KVLVLEKG~  467 (720)
                      +|+|||+|..|+-+|..|++. |.+|+|+|+++
T Consensus       172 ~vvIIGgG~iG~E~A~~l~~~-g~~Vtli~~~~  203 (458)
T PRK06912        172 SLLIVGGGVIGCEFASIYSRL-GTKVTIVEMAP  203 (458)
T ss_pred             cEEEECCCHHHHHHHHHHHHc-CCeEEEEecCC
Confidence            899999999999999999998 99999999873

>PLN02976 amine oxidase

Probab=96.72  E-value=0.0016  Score=82.00  Aligned_cols=40  Identities=33%  Similarity=0.375  Sum_probs=35.4

Q ss_pred             CcccEEEECCcHHHHHHHHHHHhcCCCcEEEEccCCCCCCC
Q psy14408        432 DCFDIIIVGASAAGCVLANRLSEVSSLKVLLIEAGGDTPIH  472 (720)
Q Consensus       432 ~eyDVVIIGSGiAGLvAA~~LAea~G~KVLVLEKG~~~~~s  472 (720)
                      ...||+|||||++|+++|++|+++ |++|+|||+....++.
T Consensus       692 ~~~dV~IIGAG~AGLaAA~~L~~~-G~~V~VlEa~~~vGGr  731 (1713)
T PLN02976        692 DRKKIIVVGAGPAGLTAARHLQRQ-GFSVTVLEARSRIGGR  731 (1713)
T ss_pred             CCCcEEEECchHHHHHHHHHHHHC-CCcEEEEeeccCCCCc
Confidence            347999999999999999999999 9999999998666443

>PRK06115 dihydrolipoamide dehydrogenase; Reviewed

Probab=96.70  E-value=0.012  Score=66.95  Aligned_cols=32  Identities=19%  Similarity=0.354  Sum_probs=30.2

Q ss_pred             cEEEECCcHHHHHHHHHHHhcCCCcEEEEccCC
Q psy14408        435 DIIIVGASAAGCVLANRLSEVSSLKVLLIEAGG  467 (720)
Q Consensus       435 DVVIIGSGiAGLvAA~~LAea~G~KVLVLEKG~  467 (720)
                      .|+|||+|..|+-+|..|++. |.+|+|+|++.
T Consensus       176 ~vvIIGgG~ig~E~A~~l~~~-G~~Vtlie~~~  207 (466)
T PRK06115        176 HLVVIGAGVIGLELGSVWRRL-GAQVTVVEYLD  207 (466)
T ss_pred             eEEEECCCHHHHHHHHHHHHc-CCeEEEEeCCC
Confidence            799999999999999999999 99999999873

>TIGR01421 gluta_reduc_1 glutathione-disulfide reductase, animal/bacterial

Probab=96.69  E-value=0.0097  Score=67.41  Aligned_cols=32  Identities=25%  Similarity=0.284  Sum_probs=30.5

Q ss_pred             cEEEECCcHHHHHHHHHHHhcCCCcEEEEccCC
Q psy14408        435 DIIIVGASAAGCVLANRLSEVSSLKVLLIEAGG  467 (720)
Q Consensus       435 DVVIIGSGiAGLvAA~~LAea~G~KVLVLEKG~  467 (720)
                      .|+|||||..|+-+|..|++. |.+|+|||+++
T Consensus       168 ~vvIIGgG~iG~E~A~~l~~~-g~~Vtli~~~~  199 (450)
T TIGR01421       168 RVVIVGAGYIAVELAGVLHGL-GSETHLVIRHE  199 (450)
T ss_pred             eEEEECCCHHHHHHHHHHHHc-CCcEEEEecCC
Confidence            899999999999999999999 99999999873

The tripeptide glutathione is an important reductant, e.g., for maintaining the cellular thiol/disulfide status and for protecting against reactive oxygen species such as hydrogen peroxide. Glutathione-disulfide reductase regenerates reduced glutathione from oxidized glutathione (glutathione disulfide) + NADPH. This model represents one of two closely related subfamilies of glutathione-disulfide reductase. Both are closely related to trypanothione reductase, and separate models are built so each of the three can describe proteins with conserved function. This model describes glutathione-disulfide reductases of animals, yeast, and a number of animal-resident bacteria.

>PRK05249 soluble pyridine nucleotide transhydrogenase; Provisional

Probab=96.68  E-value=0.011  Score=66.63  Aligned_cols=32  Identities=34%  Similarity=0.594  Sum_probs=30.4

Q ss_pred             cEEEECCcHHHHHHHHHHHhcCCCcEEEEccCC
Q psy14408        435 DIIIVGASAAGCVLANRLSEVSSLKVLLIEAGG  467 (720)
Q Consensus       435 DVVIIGSGiAGLvAA~~LAea~G~KVLVLEKG~  467 (720)
                      .|+|||+|..|+-+|..|++. |.+|+|||+++
T Consensus       177 ~v~IiGgG~~g~E~A~~l~~~-g~~Vtli~~~~  208 (461)
T PRK05249        177 SLIIYGAGVIGCEYASIFAAL-GVKVTLINTRD  208 (461)
T ss_pred             eEEEECCCHHHHHHHHHHHHc-CCeEEEEecCC
Confidence            899999999999999999999 99999999873

>PRK06467 dihydrolipoamide dehydrogenase; Reviewed

Probab=96.61  E-value=0.014  Score=66.41  Aligned_cols=32  Identities=13%  Similarity=0.257  Sum_probs=30.5

Q ss_pred             cEEEECCcHHHHHHHHHHHhcCCCcEEEEccCC
Q psy14408        435 DIIIVGASAAGCVLANRLSEVSSLKVLLIEAGG  467 (720)
Q Consensus       435 DVVIIGSGiAGLvAA~~LAea~G~KVLVLEKG~  467 (720)
                      .|+|||+|..|+-+|..|++. |.+|+|||+++
T Consensus       176 ~vvIiGgG~iG~E~A~~l~~~-G~~Vtlv~~~~  207 (471)
T PRK06467        176 RLLVMGGGIIGLEMGTVYHRL-GSEVDVVEMFD  207 (471)
T ss_pred             eEEEECCCHHHHHHHHHHHHc-CCCEEEEecCC
Confidence            899999999999999999999 99999999874

>TIGR03862 flavo_PP4765 uncharacterized flavoprotein, PP_4765 family

Probab=96.61  E-value=0.011  Score=65.82  Aligned_cols=57  Identities=12%  Similarity=0.088  Sum_probs=38.7

Q ss_pred             hHHHHHHHHHHhcCCCeEEEcCeEEEEEEEccCCcEEEEEEEecCCcEEEEEcCcEEEEccCCcch
Q psy14408        634 SAADAYLTPIAGKRTNLYVLKRSKVTKVIINDQNVATGVEYVNSKGETVRVTANKEVILTAGAIAN  699 (720)
Q Consensus       634 ~aa~a~L~~Aa~e~aGVkIi~gt~VtkIl~e~gGrAtGV~v~dt~G~e~tIkAkK~VVVAAGa~~S  699 (720)
                      ......|..++ ++.||+|+++++|++|  + +++ .+|++..  ++ ..++|+ .||||+|+...
T Consensus        86 ~sVv~~L~~~l-~~~gV~i~~~~~V~~i--~-~~~-~~v~~~~--~~-~~~~a~-~vIlAtGG~s~  142 (376)
T TIGR03862        86 APLLRAWLKRL-AEQGVQFHTRHRWIGW--Q-GGT-LRFETPD--GQ-STIEAD-AVVLALGGASW  142 (376)
T ss_pred             HHHHHHHHHHH-HHCCCEEEeCCEEEEE--e-CCc-EEEEECC--Cc-eEEecC-EEEEcCCCccc
Confidence            34444555555 5899999999999999  3 332 4455432  22 368998 59999998653

This model describes a sharply distinctive clade of proteins within the larger family of flavoproteins described by Pfam model pfam03486 and TIGRFAMs model TIGR00275. The function is unknown.

>PRK06116 glutathione reductase; Validated

Probab=96.60  E-value=0.012  Score=66.22  Aligned_cols=32  Identities=22%  Similarity=0.304  Sum_probs=30.3

Q ss_pred             cEEEECCcHHHHHHHHHHHhcCCCcEEEEccCC
Q psy14408        435 DIIIVGASAAGCVLANRLSEVSSLKVLLIEAGG  467 (720)
Q Consensus       435 DVVIIGSGiAGLvAA~~LAea~G~KVLVLEKG~  467 (720)
                      .|+|||+|..|+-+|..|++. |.+|+|++++.
T Consensus       169 ~vvViGgG~~g~E~A~~l~~~-g~~Vtlv~~~~  200 (450)
T PRK06116        169 RVAVVGAGYIAVEFAGVLNGL-GSETHLFVRGD  200 (450)
T ss_pred             eEEEECCCHHHHHHHHHHHHc-CCeEEEEecCC
Confidence            899999999999999999999 99999999873

>PTZ00188 adrenodoxin reductase; Provisional

Probab=96.53  E-value=0.0026  Score=73.04  Aligned_cols=37  Identities=22%  Similarity=0.205  Sum_probs=32.1

Q ss_pred             ccEEEECCcHHHHHHHHHHH-hcCCCcEEEEccCCCCCC
Q psy14408        434 FDIIIVGASAAGCVLANRLS-EVSSLKVLLIEAGGDTPI  471 (720)
Q Consensus       434 yDVVIIGSGiAGLvAA~~LA-ea~G~KVLVLEKG~~~~~  471 (720)
                      .-|+|||||++|+.||.+|+ +. |++|+|+||...+.+
T Consensus        40 krVAIVGaGPAGlyaA~~Ll~~~-g~~VtlfEk~p~pgG   77 (506)
T PTZ00188         40 FKVGIIGAGPSALYCCKHLLKHE-RVKVDIFEKLPNPYG   77 (506)
T ss_pred             CEEEEECCcHHHHHHHHHHHHhc-CCeEEEEecCCCCcc
Confidence            37999999999999999876 56 999999999877643

>PRK07845 flavoprotein disulfide reductase; Reviewed

Probab=96.50  E-value=0.013  Score=66.51  Aligned_cols=32  Identities=28%  Similarity=0.566  Sum_probs=30.2

Q ss_pred             cEEEECCcHHHHHHHHHHHhcCCCcEEEEccCC
Q psy14408        435 DIIIVGASAAGCVLANRLSEVSSLKVLLIEAGG  467 (720)
Q Consensus       435 DVVIIGSGiAGLvAA~~LAea~G~KVLVLEKG~  467 (720)
                      .|+|||+|..|+-+|..|++. |.+|+|||++.
T Consensus       179 ~vvVIGgG~ig~E~A~~l~~~-g~~Vtli~~~~  210 (466)
T PRK07845        179 HLIVVGSGVTGAEFASAYTEL-GVKVTLVSSRD  210 (466)
T ss_pred             eEEEECCCHHHHHHHHHHHHc-CCeEEEEEcCC
Confidence            799999999999999999999 99999999873

>KOG1439|consensus

Probab=96.44  E-value=0.023  Score=63.32  Aligned_cols=41  Identities=27%  Similarity=0.423  Sum_probs=37.1

Q ss_pred             CCcccEEEECCcHHHHHHHHHHHhcCCCcEEEEccCCCCCCC
Q psy14408        431 GDCFDIIIVGASAAGCVLANRLSEVSSLKVLLIEAGGDTPIH  472 (720)
Q Consensus       431 d~eyDVVIIGSGiAGLvAA~~LAea~G~KVLVLEKG~~~~~s  472 (720)
                      +++|||||+|-|..=+..+..|+.+ |.|||.+||++..++.
T Consensus         2 deeyDvivlGTgl~ecilS~~Ls~~-gkkVLhiDrN~yYG~~   42 (440)
T KOG1439|consen    2 DEEYDVIVLGTGLTECILSGALSVD-GKKVLHIDRNDYYGGE   42 (440)
T ss_pred             CCceeEEEEcCCchhheeeeeeeec-CcEEEEEeCCCCCCcc
Confidence            4569999999999999999999999 9999999999887544

>PRK06292 dihydrolipoamide dehydrogenase; Validated

Probab=96.38  E-value=0.023  Score=64.09  Aligned_cols=32  Identities=28%  Similarity=0.539  Sum_probs=30.4

Q ss_pred             cEEEECCcHHHHHHHHHHHhcCCCcEEEEccCC
Q psy14408        435 DIIIVGASAAGCVLANRLSEVSSLKVLLIEAGG  467 (720)
Q Consensus       435 DVVIIGSGiAGLvAA~~LAea~G~KVLVLEKG~  467 (720)
                      .|+|||+|..|+-+|..|++. |.+|+|+|+++
T Consensus       171 ~v~VIGgG~~g~E~A~~l~~~-g~~Vtli~~~~  202 (460)
T PRK06292        171 SLAVIGGGVIGLELGQALSRL-GVKVTVFERGD  202 (460)
T ss_pred             eEEEECCCHHHHHHHHHHHHc-CCcEEEEecCC
Confidence            899999999999999999999 99999999873

>KOG3923|consensus

Probab=96.36  E-value=0.016  Score=62.42  Aligned_cols=32  Identities=28%  Similarity=0.307  Sum_probs=25.0

Q ss_pred             ccEEEECCcHHHHHHHHHHHhc------CCCcEEEEcc
Q psy14408        434 FDIIIVGASAAGCVLANRLSEV------SSLKVLLIEA  465 (720)
Q Consensus       434 yDVVIIGSGiAGLvAA~~LAea------~G~KVLVLEK  465 (720)
                      -+|+|||+|+.||++|+.+.+.      +-.+|.|++-
T Consensus         4 ~~iaViGaGVIGlsTA~~i~~~~~~~~ip~~~vtv~~D   41 (342)
T KOG3923|consen    4 PRIAVIGAGVIGLSTALCILELYHSVLIPVAKVTVISD   41 (342)
T ss_pred             ccEEEEcCCeechhHHHHHHHhhhhccCCcceEEEecC
Confidence            4899999999999999777764      1256777763

>TIGR03467 HpnE squalene-associated FAD-dependent desaturase

Probab=96.36  E-value=0.02  Score=62.60  Aligned_cols=50  Identities=18%  Similarity=0.149  Sum_probs=34.8

Q ss_pred             cCCCeEEEcCeEEEEEEEccCCcEEEEEEEecCCcEEEEEcCcEEEEccCCcchHH
Q psy14408        646 KRTNLYVLKRSKVTKVIINDQNVATGVEYVNSKGETVRVTANKEVILTAGAIANAQ  701 (720)
Q Consensus       646 e~aGVkIi~gt~VtkIl~e~gGrAtGV~v~dt~G~e~tIkAkK~VVVAAGa~~Sp~  701 (720)
                      ++.|++|+++++|++|..+ +++++.+...  +|+  ++.|+ .||+|+.......
T Consensus       208 ~~~g~~i~~~~~V~~i~~~-~~~~~~~~~~--~g~--~~~~d-~vi~a~p~~~~~~  257 (419)
T TIGR03467       208 DSRGGEVRLGTRVRSIEAN-AGGIRALVLS--GGE--TLPAD-AVVLAVPPRHAAS  257 (419)
T ss_pred             HHcCCEEEcCCeeeEEEEc-CCcceEEEec--CCc--cccCC-EEEEcCCHHHHHH
Confidence            3679999999999999988 5555433222  343  68897 5999877644433

The sequences in this family are members of the pfam01593 superfamily of flavin-containing amine oxidases which include the phytoene desaturases. These sequences also include a FAD-dependent oxidoreductase domain, pfam01266. The genes of the family modeled here are generally in the same locus with genes involved in the biosynthesis and elaboration of squalene, the condensation product of the polyisoprenoid farnesyl pyrophosphate. This gene and its association with hopene biosynthesis in Zymomonas mobilis has been noted in the literature where the gene symbol hpnE was assigned. This gene is also found in contexts where the downstream conversion of squalene to hopenes is not evidence. The precise nature of the reaction catalyzed by this enzyme is unknown at this time.

>KOG3851|consensus

Probab=96.33  E-value=0.044  Score=59.76  Aligned_cols=36  Identities=19%  Similarity=0.363  Sum_probs=30.8

Q ss_pred             CCcccEEEECCcHHHHHHHHHHHhcCC-CcEEEEccC
Q psy14408        431 GDCFDIIIVGASAAGCVLANRLSEVSS-LKVLLIEAG  466 (720)
Q Consensus       431 d~eyDVVIIGSGiAGLvAA~~LAea~G-~KVLVLEKG  466 (720)
                      ...+.|+|||||.+|+++|..+.++.| -+|.|||-.
T Consensus        37 ~~h~kvLVvGGGsgGi~~A~k~~rkl~~g~vgIvep~   73 (446)
T KOG3851|consen   37 RKHFKVLVVGGGSGGIGMAAKFYRKLGSGSVGIVEPA   73 (446)
T ss_pred             ccceEEEEEcCCcchhHHHHHHHhhcCCCceEEecch
Confidence            357899999999999999999998745 479999954

>PRK08010 pyridine nucleotide-disulfide oxidoreductase; Provisional

Probab=96.31  E-value=0.024  Score=63.70  Aligned_cols=32  Identities=25%  Similarity=0.392  Sum_probs=30.3

Q ss_pred             cEEEECCcHHHHHHHHHHHhcCCCcEEEEccCC
Q psy14408        435 DIIIVGASAAGCVLANRLSEVSSLKVLLIEAGG  467 (720)
Q Consensus       435 DVVIIGSGiAGLvAA~~LAea~G~KVLVLEKG~  467 (720)
                      .|+|||+|..|+-+|..|++. |.+|+|||++.
T Consensus       160 ~v~ViGgG~~g~E~A~~l~~~-g~~Vtli~~~~  191 (441)
T PRK08010        160 HLGILGGGYIGVEFASMFANF-GSKVTILEAAS  191 (441)
T ss_pred             eEEEECCCHHHHHHHHHHHHC-CCeEEEEecCC
Confidence            899999999999999999999 99999999873

>PRK14727 putative mercuric reductase; Provisional

Probab=96.28  E-value=0.036  Score=63.33  Aligned_cols=31  Identities=13%  Similarity=0.380  Sum_probs=29.4

Q ss_pred             cEEEECCcHHHHHHHHHHHhcCCCcEEEEccC
Q psy14408        435 DIIIVGASAAGCVLANRLSEVSSLKVLLIEAG  466 (720)
Q Consensus       435 DVVIIGSGiAGLvAA~~LAea~G~KVLVLEKG  466 (720)
                      .|+|||+|..|+-+|..|++. |.+|+||++.
T Consensus       190 ~vvVIGgG~iG~E~A~~l~~~-G~~Vtlv~~~  220 (479)
T PRK14727        190 SLTVIGSSVVAAEIAQAYARL-GSRVTILARS  220 (479)
T ss_pred             eEEEECCCHHHHHHHHHHHHc-CCEEEEEEcC
Confidence            799999999999999999998 9999999874

>PLN02507 glutathione reductase

Probab=96.26  E-value=0.026  Score=65.03  Aligned_cols=32  Identities=13%  Similarity=0.107  Sum_probs=30.2

Q ss_pred             cEEEECCcHHHHHHHHHHHhcCCCcEEEEccCC
Q psy14408        435 DIIIVGASAAGCVLANRLSEVSSLKVLLIEAGG  467 (720)
Q Consensus       435 DVVIIGSGiAGLvAA~~LAea~G~KVLVLEKG~  467 (720)
                      .|+|||+|..|+-+|..|++. |.+|+|+|++.
T Consensus       205 ~vvVIGgG~ig~E~A~~l~~~-G~~Vtli~~~~  236 (499)
T PLN02507        205 RAVVLGGGYIAVEFASIWRGM-GATVDLFFRKE  236 (499)
T ss_pred             eEEEECCcHHHHHHHHHHHHc-CCeEEEEEecC
Confidence            799999999999999999998 99999999873

>COG0493 GltD NADPH-dependent glutamate synthase beta chain and related oxidoreductases [Amino acid transport and metabolism / General function prediction only]

Probab=95.94  E-value=0.0064  Score=69.41  Aligned_cols=38  Identities=24%  Similarity=0.220  Sum_probs=34.3

Q ss_pred             ccEEEECCcHHHHHHHHHHHhcCCCcEEEEccCCCCCCC
Q psy14408        434 FDIIIVGASAAGCVLANRLSEVSSLKVLLIEAGGDTPIH  472 (720)
Q Consensus       434 yDVVIIGSGiAGLvAA~~LAea~G~KVLVLEKG~~~~~s  472 (720)
                      -.|.|||||++||+||..|+++ |+.|+|.|+....++.
T Consensus       124 ~~VaviGaGPAGl~~a~~L~~~-G~~Vtv~e~~~~~GGl  161 (457)
T COG0493         124 KKVAVIGAGPAGLAAADDLSRA-GHDVTVFERVALDGGL  161 (457)
T ss_pred             CEEEEECCCchHhhhHHHHHhC-CCeEEEeCCcCCCcee
Confidence            4999999999999999999999 9999999998666443

>TIGR01423 trypano_reduc trypanothione-disulfide reductase

Probab=95.92  E-value=0.04  Score=63.35  Aligned_cols=56  Identities=18%  Similarity=0.376  Sum_probs=38.3

Q ss_pred             CCCeEEEcCeEEEEEEEccCCcEEEEEEEecCCcEEEEEcCcEEEEccCCcchHHHH--HHcCC
Q psy14408        647 RTNLYVLKRSKVTKVIINDQNVATGVEYVNSKGETVRVTANKEVILTAGAIANAQLL--LLSGI  708 (720)
Q Consensus       647 ~aGVkIi~gt~VtkIl~e~gGrAtGV~v~dt~G~e~tIkAkK~VVVAAGa~~Sp~LL--l~SGI  708 (720)
                      +.|+++++++.|++|..+ ++....|++.+  |+  ++.++ .||+|+|......+|  .+.|+
T Consensus       243 ~~GI~i~~~~~v~~i~~~-~~~~~~v~~~~--g~--~i~~D-~vl~a~G~~Pn~~~l~l~~~gl  300 (486)
T TIGR01423       243 ANGINIMTNENPAKVTLN-ADGSKHVTFES--GK--TLDVD-VVMMAIGRVPRTQTLQLDKVGV  300 (486)
T ss_pred             HcCCEEEcCCEEEEEEEc-CCceEEEEEcC--CC--EEEcC-EEEEeeCCCcCcccCCchhhCc
Confidence            679999999999999865 33333444433  53  68898 599999976555543  34554

Trypanothione, a glutathione-modified derivative of spermidine, is (in its reduced form) an important antioxidant found in trypanosomatids (Crithidia, Leishmania, Trypanosoma). This model describes trypanothione reductase, a possible antitrypanosomal drug target closely related to some forms of glutathione reductase.

>KOG0399|consensus

Probab=95.44  E-value=0.013  Score=71.65  Aligned_cols=40  Identities=20%  Similarity=0.234  Sum_probs=36.1

Q ss_pred             CcccEEEECCcHHHHHHHHHHHhcCCCcEEEEccCCCCCCC
Q psy14408        432 DCFDIIIVGASAAGCVLANRLSEVSSLKVLLIEAGGDTPIH  472 (720)
Q Consensus       432 ~eyDVVIIGSGiAGLvAA~~LAea~G~KVLVLEKG~~~~~s  472 (720)
                      .-..|.|||||.+||+||-+|-+. ||.|+|.||.++.++-
T Consensus      1784 tg~~vaiigsgpaglaaadqlnk~-gh~v~vyer~dr~ggl 1823 (2142)
T KOG0399|consen 1784 TGKRVAIIGSGPAGLAAADQLNKA-GHTVTVYERSDRVGGL 1823 (2142)
T ss_pred             cCcEEEEEccCchhhhHHHHHhhc-CcEEEEEEecCCcCce
Confidence            346899999999999999999999 9999999999877654

>COG0446 HcaD Uncharacterized NAD(FAD)-dependent dehydrogenases [General function prediction only]

Probab=95.39  E-value=0.016  Score=62.69  Aligned_cols=38  Identities=32%  Similarity=0.339  Sum_probs=34.7

Q ss_pred             ccEEEECCcHHHHHHHHHHHhcCCCcEEEEccCCCCCCC
Q psy14408        434 FDIIIVGASAAGCVLANRLSEVSSLKVLLIEAGGDTPIH  472 (720)
Q Consensus       434 yDVVIIGSGiAGLvAA~~LAea~G~KVLVLEKG~~~~~s  472 (720)
                      -+|+|||+|..|+-+|..|+++ |++|+|+|+.....+.
T Consensus       137 ~~v~vvG~G~~gle~A~~~~~~-G~~v~l~e~~~~~~~~  174 (415)
T COG0446         137 KDVVVVGAGPIGLEAAEAAAKR-GKKVTLIEAADRLGGQ  174 (415)
T ss_pred             CeEEEECCcHHHHHHHHHHHHc-CCeEEEEEcccccchh
Confidence            4999999999999999999999 9999999999776443

>KOG2403|consensus

Probab=95.38  E-value=0.02  Score=65.92  Aligned_cols=35  Identities=31%  Similarity=0.434  Sum_probs=32.0

Q ss_pred             CCcccEEEECCcHHHHHHHHHHHhcCCCcEEEEccC
Q psy14408        431 GDCFDIIIVGASAAGCVLANRLSEVSSLKVLLIEAG  466 (720)
Q Consensus       431 d~eyDVVIIGSGiAGLvAA~~LAea~G~KVLVLEKG  466 (720)
                      +..||.+|||+|-+|+-+|..|++. |.+|.++-|-
T Consensus        53 ~~~~da~vvgaggAGlr~~~~lae~-g~~~a~itkl   87 (642)
T KOG2403|consen   53 DHTYDAVVVGAGGAGLRAARGLAEL-GEKTAVITKL   87 (642)
T ss_pred             eeeceeEEEeccchhhhhhhhhhhc-CceEEEEecc
Confidence            3458999999999999999999999 9999999875

>PRK04965 NADH:flavorubredoxin oxidoreductase; Provisional

Probab=95.37  E-value=0.02  Score=62.89  Aligned_cols=35  Identities=23%  Similarity=0.378  Sum_probs=30.1

Q ss_pred             ccEEEECCcHHHHHHHHHHHhc-CCCcEEEEccCCC
Q psy14408        434 FDIIIVGASAAGCVLANRLSEV-SSLKVLLIEAGGD  468 (720)
Q Consensus       434 yDVVIIGSGiAGLvAA~~LAea-~G~KVLVLEKG~~  468 (720)
                      .||||||||++|+.+|..|.+. ++.+|+||++...
T Consensus         3 ~~vvIiG~G~AG~~~a~~lr~~~~~~~Itvi~~~~~   38 (377)
T PRK04965          3 NGIVIIGSGFAARQLVKNIRKQDAHIPITLITADSG   38 (377)
T ss_pred             CCEEEECCcHHHHHHHHHHHhhCcCCCEEEEeCCCC
Confidence            3999999999999999999874 3578999998654

>KOG3855|consensus

Probab=95.37  E-value=0.014  Score=65.27  Aligned_cols=39  Identities=36%  Similarity=0.590  Sum_probs=32.9

Q ss_pred             CCCcccEEEECCcHHHHHHHHHHHhc---CCCcEEEEccCCC
Q psy14408        430 SGDCFDIIIVGASAAGCVLANRLSEV---SSLKVLLIEAGGD  468 (720)
Q Consensus       430 ~d~eyDVVIIGSGiAGLvAA~~LAea---~G~KVLVLEKG~~  468 (720)
                      ....+||||||||..|++.|..|...   ..+||+|||.+.-
T Consensus        33 ~~~~~dVvIvGgGpvg~aLAa~l~snp~~~~~kv~Lld~~~s   74 (481)
T KOG3855|consen   33 DTAKYDVVIVGGGPVGLALAAALGSNPPFQDKKVLLLDAGDS   74 (481)
T ss_pred             CcccCCEEEECCchHHHHHHHHhccCCccchheeeEEecccC
Confidence            34478999999999999999999864   2689999999843

>PF13434 K_oxygenase: L-lysine 6-monooxygenase (NADPH-requiring); PDB: 3S61_B 3S5W_B

Probab=95.11  E-value=0.96  Score=49.89  Aligned_cols=45  Identities=22%  Similarity=0.324  Sum_probs=29.2

Q ss_pred             CeEEEcCeEEEEEEEccCCcEEEEEEEec-CCcEEEEEcCcEEEEccC
Q psy14408        649 NLYVLKRSKVTKVIINDQNVATGVEYVNS-KGETVRVTANKEVILTAG  695 (720)
Q Consensus       649 GVkIi~gt~VtkIl~e~gGrAtGV~v~dt-~G~e~tIkAkK~VVVAAG  695 (720)
                      -++|+.+++|+++..+++|++ -+.+.+. .|+..++.++ .||+|||
T Consensus       293 ~~~l~~~~~v~~~~~~~~~~~-~l~~~~~~~~~~~~~~~D-~VilATG  338 (341)
T PF13434_consen  293 RLRLLPNTEVTSAEQDGDGGV-RLTLRHRQTGEEETLEVD-AVILATG  338 (341)
T ss_dssp             -SEEETTEEEEEEEEES-SSE-EEEEEETTT--EEEEEES-EEEE---
T ss_pred             CeEEeCCCEEEEEEECCCCEE-EEEEEECCCCCeEEEecC-EEEEcCC
Confidence            599999999999998832443 3445543 5677889998 5999999

>COG4716 Myosin-crossreactive antigen [Function unknown]

Probab=95.05  E-value=0.019  Score=63.58  Aligned_cols=36  Identities=19%  Similarity=0.084  Sum_probs=29.9

Q ss_pred             ccEEEECCcHHHHHHHHHHHhc---CCCcEEEEccCCCC
Q psy14408        434 FDIIIVGASAAGCVLANRLSEV---SSLKVLLIEAGGDT  469 (720)
Q Consensus       434 yDVVIIGSGiAGLvAA~~LAea---~G~KVLVLEKG~~~  469 (720)
                      --+-|||+|++||++|..|.|.   .|.++-+||.-...
T Consensus        23 KsaY~vG~GlAsLA~AvfLIRDg~m~G~~IHilEelpl~   61 (587)
T COG4716          23 KSAYIVGGGLASLAAAVFLIRDGQMDGKRIHILEELPLA   61 (587)
T ss_pred             ceeEEEccchHhhhheeEEEeccccCCceeEeeecCccc
Confidence            4788999999999999999885   26799999965443

>COG3486 IucD Lysine/ornithine N-monooxygenase [Secondary metabolites biosynthesis, transport, and catabolism]

Probab=95.02  E-value=0.16  Score=56.97  Aligned_cols=38  Identities=34%  Similarity=0.437  Sum_probs=33.3

Q ss_pred             CCcccEEEECCcHHHHHHHHHHHhcCCCcEEEEccCCC
Q psy14408        431 GDCFDIIIVGASAAGCVLANRLSEVSSLKVLLIEAGGD  468 (720)
Q Consensus       431 d~eyDVVIIGSGiAGLvAA~~LAea~G~KVLVLEKG~~  468 (720)
                      ...+|+|.||-|+.-|+.|..|.++.+++++.|||-..
T Consensus         3 ~~~~DliGIG~GPfNL~LA~ll~e~~~~~~lFLerkp~   40 (436)
T COG3486           3 AEVLDLIGIGIGPFNLSLAALLEEHSGLKSLFLERKPD   40 (436)
T ss_pred             CcceeeEEEccCchHHHHHHHhccccCcceEEEecCCC
Confidence            34679999999999999999999974689999999743

>KOG1336|consensus

Probab=94.83  E-value=0.14  Score=58.34  Aligned_cols=55  Identities=16%  Similarity=0.213  Sum_probs=45.7

Q ss_pred             cCCCeEEEcCeEEEEEEEccCCcEEEEEEEecCCcEEEEEcCcEEEEccCCcchHHHHHH
Q psy14408        646 KRTNLYVLKRSKVTKVIINDQNVATGVEYVNSKGETVRVTANKEVILTAGAIANAQLLLL  705 (720)
Q Consensus       646 e~aGVkIi~gt~VtkIl~e~gGrAtGV~v~dt~G~e~tIkAkK~VVVAAGa~~Sp~LLl~  705 (720)
                      ++.|++|+.++.|.++....+|+++-|.+.+  |+  ++.|+ -||+..|+-....++..
T Consensus       266 e~kgVk~~~~t~~s~l~~~~~Gev~~V~l~d--g~--~l~ad-lvv~GiG~~p~t~~~~~  320 (478)
T KOG1336|consen  266 ENKGVKFYLGTVVSSLEGNSDGEVSEVKLKD--GK--TLEAD-LVVVGIGIKPNTSFLEK  320 (478)
T ss_pred             HhcCeEEEEecceeecccCCCCcEEEEEecc--CC--EeccC-eEEEeeccccccccccc
Confidence            4789999999999999887568999998887  64  78998 59999998777666664

>PF02558 ApbA: Ketopantoate reductase PanE/ApbA; InterPro: IPR013332 ApbA, the ketopantoate reductase enzyme 1

Probab=94.72  E-value=0.039  Score=52.53  Aligned_cols=31  Identities=35%  Similarity=0.578  Sum_probs=29.3

Q ss_pred             EEEECCcHHHHHHHHHHHhcCCCcEEEEccCC
Q psy14408        436 IIIVGASAAGCVLANRLSEVSSLKVLLIEAGG  467 (720)
Q Consensus       436 VVIIGSGiAGLvAA~~LAea~G~KVLVLEKG~  467 (720)
                      |+|||+|..|+..|.+|+++ |++|.++.|..
T Consensus         1 I~I~G~GaiG~~~a~~L~~~-g~~V~l~~r~~   31 (151)
T PF02558_consen    1 ILIIGAGAIGSLYAARLAQA-GHDVTLVSRSP   31 (151)
T ss_dssp             EEEESTSHHHHHHHHHHHHT-TCEEEEEESHH
T ss_pred             CEEECcCHHHHHHHHHHHHC-CCceEEEEccc
Confidence            68999999999999999998 99999999983

1.1.169 from EC of Salmonella typhimurium is required for the synthesis of thiamine via the alternative pyrimidine biosynthetic pathway []. Precursors to the pyrimidine moiety of thiamine are synthesized de novo by the purine biosynthetic pathway or the alternative pyrimidine biosynthetic (APB) pathway. The ApbA protein catalyzes the NADPH-specific reduction of ketopantoic acid to pantoic acid. This activity had previously been associated with the pantothenate biosynthetic gene panE []. ApbA and PanE are allelic [].; GO: 0008677 2-dehydropantoate 2-reductase activity, 0055114 oxidation-reduction process; PDB: 3EGO_B 3HWR_B 2QYT_A 1YJQ_A 1KS9_A 2OFP_A 1YON_A 3G17_E 3GHY_B 3I83_B ....

>PF01210 NAD_Gly3P_dh_N: NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus; InterPro: IPR011128 NAD-dependent glycerol-3-phosphate dehydrogenase (GPDH) catalyses the interconversion of dihydroxyacetone phosphate and L-glycerol-3-phosphate

Probab=94.72  E-value=0.035  Score=54.11  Aligned_cols=30  Identities=30%  Similarity=0.371  Sum_probs=29.0

Q ss_pred             EEEECCcHHHHHHHHHHHhcCCCcEEEEccC
Q psy14408        436 IIIVGASAAGCVLANRLSEVSSLKVLLIEAG  466 (720)
Q Consensus       436 VVIIGSGiAGLvAA~~LAea~G~KVLVLEKG  466 (720)
                      |.|||||..|.++|..|+++ |++|.|..+.
T Consensus         2 I~ViGaG~~G~AlA~~la~~-g~~V~l~~~~   31 (157)
T PF01210_consen    2 IAVIGAGNWGTALAALLADN-GHEVTLWGRD   31 (157)
T ss_dssp             EEEESSSHHHHHHHHHHHHC-TEEEEEETSC
T ss_pred             EEEECcCHHHHHHHHHHHHc-CCEEEEEecc
Confidence            78999999999999999999 9999999986

This family represents the N-terminal NAD-binding domain [].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0046168 glycerol-3-phosphate catabolic process, 0055114 oxidation-reduction process, 0005737 cytoplasm; PDB: 1YJ8_B 2PLA_A 1WPQ_B 1X0V_A 1X0X_A 1BG6_A 1TXG_B 1N1G_A 1M67_A 1JDJ_A ....

>PF01593 Amino_oxidase: Flavin containing amine oxidoreductase This is a subset of the Pfam family; InterPro: IPR002937 This entry consists of various amine oxidases, including maize polyamine oxidase (PAO) [], L-amino acid oxidases (LAO) and various flavin containing monoamine oxidases (MAO)

Probab=94.68  E-value=0.028  Score=60.18  Aligned_cols=29  Identities=24%  Similarity=0.226  Sum_probs=26.5

Q ss_pred             HHHHHHHHHHHhcCCCcEEEEccCCCCCCC
Q psy14408        443 AAGCVLANRLSEVSSLKVLLIEAGGDTPIH  472 (720)
Q Consensus       443 iAGLvAA~~LAea~G~KVLVLEKG~~~~~s  472 (720)
                      ++||+||++|+++ |++|+||||.++.++.
T Consensus         1 iaGL~aA~~L~~~-G~~v~vlEa~~r~GGr   29 (450)
T PF01593_consen    1 IAGLAAAYYLAKA-GYDVTVLEASDRVGGR   29 (450)
T ss_dssp             HHHHHHHHHHHHT-TTEEEEEESSSSSBTT
T ss_pred             ChHHHHHHHHHhC-CCCEEEEEcCCCCCcc
Confidence            6899999999999 9999999999887655

The aligned region includes the flavin binding site of these enzymes. In vertebrates MAO plays an important role in regulating the intracellular levels of amines via their oxidation; these include various neurotransmitters, neurotoxins and trace amines []. In lower eukaryotes such as aspergillus and in bacteria the main role of amine oxidases is to provide a source of ammonium []. PAOs in plants, bacteria and protozoa oxidise spermidine and spermine to an aminobutyral, diaminopropane and hydrogen peroxide and are involved in the catabolism of polyamines []. Other members of this family include tryptophan 2-monooxygenase, putrescine oxidase, corticosteroid binding proteins and antibacterial glycoproteins.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2Z3Y_A 2UXN_A 2Y48_A 2HKO_A 2XAF_A 2X0L_A 2XAJ_A 2UXX_A 2V1D_A 2Z5U_A ....

>PF02737 3HCDH_N: 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain; InterPro: IPR006176 3-hydroxyacyl-CoA dehydrogenase (1

Probab=94.44  E-value=0.047  Score=54.67  Aligned_cols=30  Identities=20%  Similarity=0.387  Sum_probs=27.1

Q ss_pred             EEEECCcHHHHHHHHHHHhcCCCcEEEEccC
Q psy14408        436 IIIVGASAAGCVLANRLSEVSSLKVLLIEAG  466 (720)
Q Consensus       436 VVIIGSGiAGLvAA~~LAea~G~KVLVLEKG  466 (720)
                      |.|||+|..|...|..+|.+ |++|+|+|+.
T Consensus         2 V~ViGaG~mG~~iA~~~a~~-G~~V~l~d~~   31 (180)
T PF02737_consen    2 VAVIGAGTMGRGIAALFARA-GYEVTLYDRS   31 (180)
T ss_dssp             EEEES-SHHHHHHHHHHHHT-TSEEEEE-SS
T ss_pred             EEEEcCCHHHHHHHHHHHhC-CCcEEEEECC
Confidence            78999999999999999999 9999999986

1.1.35 from EC) (HCDH) [] is an enzyme involved in fatty acid metabolism, it catalyzes the reduction of 3-hydroxyacyl-CoA to 3-oxoacyl-CoA. Most eukaryotic cells have 2 fatty-acid beta-oxidation systems, one located in mitochondria and the other in peroxisomes. In peroxisomes 3-hydroxyacyl-CoA dehydrogenase forms, with enoyl-CoA hydratase (ECH) and 3,2-trans-enoyl-CoA isomerase (ECI) a multifunctional enzyme where the N-terminal domain bears the hydratase/isomerase activities and the C-terminal domain the dehydrogenase activity. There are two mitochondrial enzymes: one which is monofunctional and the other which is, like its peroxisomal counterpart, multifunctional. In Escherichia coli (gene fadB) and Pseudomonas fragi (gene faoA) HCDH is part of a multifunctional enzyme which also contains an ECH/ECI domain as well as a 3-hydroxybutyryl-CoA epimerase domain []. There are two major regions of similarity in the sequences of proteins of the HCDH family, the first one located in the N-terminal, corresponds to the NAD-binding site, the second one is located in the centre of the sequence. This represents the C-terminal domain which is also found in lambda crystallin. Some proteins include two copies of this domain.; GO: 0003857 3-hydroxyacyl-CoA dehydrogenase activity, 0016491 oxidoreductase activity, 0006631 fatty acid metabolic process, 0055114 oxidation-reduction process; PDB: 3K6J_A 1ZCJ_A 2X58_A 1ZEJ_A 3HDH_B 2WTB_A 1WDL_B 2D3T_B 1WDK_A 1WDM_B ....

>COG1206 Gid NAD(FAD)-utilizing enzyme possibly involved in translation [Translation, ribosomal structure and biogenesis]

Probab=94.32  E-value=0.034  Score=60.79  Aligned_cols=34  Identities=26%  Similarity=0.298  Sum_probs=30.7

Q ss_pred             ccEEEECCcHHHHHHHHHHHhcCCCcEEEEccCCC
Q psy14408        434 FDIIIVGASAAGCVLANRLSEVSSLKVLLIEAGGD  468 (720)
Q Consensus       434 yDVVIIGSGiAGLvAA~~LAea~G~KVLVLEKG~~  468 (720)
                      --|.|||||.+|.-||+++|++ |++|.|.|-.+.
T Consensus         4 ~~i~VIGaGLAGSEAAwqiA~~-Gv~V~L~EMRp~   37 (439)
T COG1206           4 QPINVIGAGLAGSEAAWQIAKR-GVPVILYEMRPV   37 (439)
T ss_pred             CceEEEcccccccHHHHHHHHc-CCcEEEEEcccc
Confidence            3689999999999999999999 999999996543

>PRK09754 phenylpropionate dioxygenase ferredoxin reductase subunit; Provisional

Probab=94.30  E-value=0.048  Score=60.50  Aligned_cols=34  Identities=32%  Similarity=0.444  Sum_probs=31.9

Q ss_pred             cEEEECCcHHHHHHHHHHHhcCCCcEEEEccCCCC
Q psy14408        435 DIIIVGASAAGCVLANRLSEVSSLKVLLIEAGGDT  469 (720)
Q Consensus       435 DVVIIGSGiAGLvAA~~LAea~G~KVLVLEKG~~~  469 (720)
                      .|||||+|..|+-+|..|++. |.+|+|||++...
T Consensus       146 ~vvViGgG~ig~E~A~~l~~~-g~~Vtlv~~~~~~  179 (396)
T PRK09754        146 SVVIVGAGTIGLELAASATQR-RCKVTVIELAATV  179 (396)
T ss_pred             eEEEECCCHHHHHHHHHHHHc-CCeEEEEecCCcc
Confidence            799999999999999999999 9999999998654

>COG0446 HcaD Uncharacterized NAD(FAD)-dependent dehydrogenases [General function prediction only]

Probab=94.15  E-value=2.8  Score=45.42  Aligned_cols=63  Identities=21%  Similarity=0.139  Sum_probs=42.7

Q ss_pred             HHHHHHHhcCCCeEEEcCeEEEEEEEccCCcEEEE--EEEecCCcEEEEEcCcEEEEccCCcchHHHHHHcC
Q psy14408        638 AYLTPIAGKRTNLYVLKRSKVTKVIINDQNVATGV--EYVNSKGETVRVTANKEVILTAGAIANAQLLLLSG  707 (720)
Q Consensus       638 a~L~~Aa~e~aGVkIi~gt~VtkIl~e~gGrAtGV--~v~dt~G~e~tIkAkK~VVVAAGa~~Sp~LLl~SG  707 (720)
                      ..+.+.. ++.|++++.++.|.+|... ++++.+.  ...+  +  ..++++ .|+++.|......++...+
T Consensus       182 ~~~~~~l-~~~gi~~~~~~~~~~i~~~-~~~~~~~~~~~~~--~--~~~~~d-~~~~~~g~~p~~~l~~~~~  246 (415)
T COG0446         182 EELAELL-EKYGVELLLGTKVVGVEGK-GNTLVVERVVGID--G--EEIKAD-LVIIGPGERPNVVLANDAL  246 (415)
T ss_pred             HHHHHHH-HHCCcEEEeCCceEEEEcc-cCcceeeEEEEeC--C--cEEEee-EEEEeecccccHHHHhhCc
Confidence            4455555 5789999999999999976 5544442  2222  4  368887 5888888765555555554

>PF03721 UDPG_MGDP_dh_N: UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain; InterPro: IPR001732 The UDP-glucose/GDP-mannose dehydrogenases are a small group of enzymes which possesses the ability to catalyse the NAD-dependent 2-fold oxidation of an alcohol to an acid without the release of an aldehyde intermediate [, ]

Probab=94.13  E-value=0.046  Score=55.13  Aligned_cols=32  Identities=25%  Similarity=0.371  Sum_probs=26.1

Q ss_pred             cEEEECCcHHHHHHHHHHHhcCCCcEEEEccCC
Q psy14408        435 DIIIVGASAAGCVLANRLSEVSSLKVLLIEAGG  467 (720)
Q Consensus       435 DVVIIGSGiAGLvAA~~LAea~G~KVLVLEKG~  467 (720)
                      -|.|||.|..||.+|..||++ |++|+.+|...
T Consensus         2 ~I~ViGlGyvGl~~A~~lA~~-G~~V~g~D~~~   33 (185)
T PF03721_consen    2 KIAVIGLGYVGLPLAAALAEK-GHQVIGVDIDE   33 (185)
T ss_dssp             EEEEE--STTHHHHHHHHHHT-TSEEEEE-S-H
T ss_pred             EEEEECCCcchHHHHHHHHhC-CCEEEEEeCCh
Confidence            488999999999999999999 99999999863

The enzymes have a wide range of functions. In plants UDP-glucose dehydrogenase, 1.1.1.22 from EC, is an important enzyme in the synthesis of hemicellulose and pectin [], which are the components of newly formed cell walls; while in zebrafish UDP-glucose dehydrogenase is required for cardiac valve formation []. In Xanthomonas campestris, a plant pathogen, UDP-glucose dehydrogenase is required for virulence []. GDP-mannose dehydrogenase, 1.1.1.132 from EC, catalyses the formation of GDP-mannuronic acid, which is the monomeric unit from which the exopolysaccharide alginate is formed. Alginate is secreted by a number of bacteria, which include Pseudomonas aeruginosa and Azotobacter vinelandii. In P. aeruginosa, alginate is believed to play an important role in the bacteria's resistance to antibiotics and the host immune response [], while in A. vinelandii it is essential for the encystment process []. This entry represents the N-terminal NAD(+)-binding domain. Structural studies indicate that this domain forms an alpha-beta structure containing the six-stranded parallel beta sheet characteristic of the dinucleotide binding Rossman fold [, ].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0055114 oxidation-reduction process; PDB: 3OJO_A 3OJL_A 1MV8_B 1MUU_A 1MFZ_C 3GG2_D 1DLJ_A 1DLI_A 3G79_B 2Y0E_D ....

>COG1251 NirB NAD(P)H-nitrite reductase [Energy production and conversion]

Probab=93.96  E-value=0.29  Score=58.57  Aligned_cols=64  Identities=19%  Similarity=0.360  Sum_probs=53.8

Q ss_pred             HHHHHHHhcCCCeEEEcCeEEEEEEEccCCcEEEEEEEecCCcEEEEEcCcEEEEccCCcchHHHHHHcCCC
Q psy14408        638 AYLTPIAGKRTNLYVLKRSKVTKVIINDQNVATGVEYVNSKGETVRVTANKEVILTAGAIANAQLLLLSGIG  709 (720)
Q Consensus       638 a~L~~Aa~e~aGVkIi~gt~VtkIl~e~gGrAtGV~v~dt~G~e~tIkAkK~VVVAAGa~~Sp~LLl~SGIg  709 (720)
                      .+|+.+. ++.|++|+++..+++|..  .+++.+|+..|  |.  .+.|+ -||+|+|......+...+||.
T Consensus       191 ~lL~~~l-e~~Gi~~~l~~~t~ei~g--~~~~~~vr~~D--G~--~i~ad-~VV~a~GIrPn~ela~~aGla  254 (793)
T COG1251         191 RLLRRKL-EDLGIKVLLEKNTEEIVG--EDKVEGVRFAD--GT--EIPAD-LVVMAVGIRPNDELAKEAGLA  254 (793)
T ss_pred             HHHHHHH-Hhhcceeecccchhhhhc--CcceeeEeecC--CC--cccce-eEEEecccccccHhHHhcCcC
Confidence            5677777 789999999999999886  47788888877  64  67887 699999998888888888886

>TIGR01350 lipoamide_DH dihydrolipoamide dehydrogenase

Probab=93.81  E-value=0.068  Score=60.25  Aligned_cols=34  Identities=24%  Similarity=0.384  Sum_probs=32.0

Q ss_pred             cEEEECCcHHHHHHHHHHHhcCCCcEEEEccCCCC
Q psy14408        435 DIIIVGASAAGCVLANRLSEVSSLKVLLIEAGGDT  469 (720)
Q Consensus       435 DVVIIGSGiAGLvAA~~LAea~G~KVLVLEKG~~~  469 (720)
                      +|+|||+|.+|+-+|..|++. |.+|+|+|++...
T Consensus       172 ~vvViGgG~~g~e~A~~l~~~-g~~Vtli~~~~~~  205 (461)
T TIGR01350       172 SLVIIGGGVIGIEFASIFASL-GSKVTVIEMLDRI  205 (461)
T ss_pred             eEEEECCCHHHHHHHHHHHHc-CCcEEEEEcCCCC
Confidence            899999999999999999999 9999999998654

The motif GGXCXXXGCXP near the N-terminus contains a redox-active disulfide.

>PRK07251 pyridine nucleotide-disulfide oxidoreductase; Provisional

Probab=93.68  E-value=0.074  Score=59.76  Aligned_cols=34  Identities=21%  Similarity=0.343  Sum_probs=31.9

Q ss_pred             cEEEECCcHHHHHHHHHHHhcCCCcEEEEccCCCC
Q psy14408        435 DIIIVGASAAGCVLANRLSEVSSLKVLLIEAGGDT  469 (720)
Q Consensus       435 DVVIIGSGiAGLvAA~~LAea~G~KVLVLEKG~~~  469 (720)
                      .|+|||+|.+|+-+|..|++. |.+|+|+|++...
T Consensus       159 ~vvIIGgG~~g~e~A~~l~~~-g~~Vtli~~~~~~  192 (438)
T PRK07251        159 RLGIIGGGNIGLEFAGLYNKL-GSKVTVLDAASTI  192 (438)
T ss_pred             eEEEECCCHHHHHHHHHHHHc-CCeEEEEecCCcc
Confidence            799999999999999999998 9999999998655

>PRK06567 putative bifunctional glutamate synthase subunit beta/2-polyprenylphenol hydroxylase; Validated

Probab=93.49  E-value=0.23  Score=61.45  Aligned_cols=57  Identities=14%  Similarity=0.176  Sum_probs=43.9

Q ss_pred             HHHHHhcCCCeEEEcCeEEEEEEEccCCcEEEEEEEec-------------CC-------------cEEEEEcCcEEEEc
Q psy14408        640 LTPIAGKRTNLYVLKRSKVTKVIINDQNVATGVEYVNS-------------KG-------------ETVRVTANKEVILT  693 (720)
Q Consensus       640 L~~Aa~e~aGVkIi~gt~VtkIl~e~gGrAtGV~v~dt-------------~G-------------~e~tIkAkK~VVVA  693 (720)
                      +..|.  +.|++|++.+...+|+.+++|+++|++++..             .+             .+++|.|+ .||+|
T Consensus       647 v~~A~--eEGV~f~~~~~P~~i~~d~~g~v~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~-~vi~A  723 (1028)
T PRK06567        647 LIYAL--ALGVDFKENMQPLRINVDKYGHVESVEFENRNRHCEQSKTAWQSHEFGLTRLPRQCYAFPRNDIKTK-TVIMA  723 (1028)
T ss_pred             HHHHH--HcCcEEEecCCcEEEEecCCCeEEEEEEEEEecccccccccccccccccCCcCcccCCCccccccCC-EEEEe
Confidence            44455  7899999999999999875689999988621             11             45789998 69999


Q ss_pred             cCCcch
Q psy14408        694 AGAIAN  699 (720)
Q Consensus       694 AGa~~S  699 (720)
                      +|.-..
T Consensus       724 ~G~~~~  729 (1028)
T PRK06567        724 IGIENN  729 (1028)
T ss_pred             cccCCc
Confidence            996443

>PRK01438 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional

Probab=93.46  E-value=0.08  Score=60.29  Aligned_cols=32  Identities=22%  Similarity=0.523  Sum_probs=29.9

Q ss_pred             cEEEECCcHHHHHHHHHHHhcCCCcEEEEccCC
Q psy14408        435 DIIIVGASAAGCVLANRLSEVSSLKVLLIEAGG  467 (720)
Q Consensus       435 DVVIIGSGiAGLvAA~~LAea~G~KVLVLEKG~  467 (720)
                      .|+|||+|.+|+.+|..|+++ |++|+|+|+..
T Consensus        18 ~v~viG~G~~G~~~A~~L~~~-G~~V~~~d~~~   49 (480)
T PRK01438         18 RVVVAGLGVSGFAAADALLEL-GARVTVVDDGD   49 (480)
T ss_pred             EEEEECCCHHHHHHHHHHHHC-CCEEEEEeCCc
Confidence            799999999999999999998 99999999764

>PRK06129 3-hydroxyacyl-CoA dehydrogenase; Validated

Probab=93.30  E-value=0.087  Score=56.79  Aligned_cols=32  Identities=25%  Similarity=0.304  Sum_probs=30.3

Q ss_pred             cEEEECCcHHHHHHHHHHHhcCCCcEEEEccCC
Q psy14408        435 DIIIVGASAAGCVLANRLSEVSSLKVLLIEAGG  467 (720)
Q Consensus       435 DVVIIGSGiAGLvAA~~LAea~G~KVLVLEKG~  467 (720)
                      .|.|||+|..|...|..|+++ |++|+++|+..
T Consensus         4 ~V~VIG~G~mG~~iA~~la~~-G~~V~v~d~~~   35 (308)
T PRK06129          4 SVAIIGAGLIGRAWAIVFARA-GHEVRLWDADP   35 (308)
T ss_pred             EEEEECccHHHHHHHHHHHHC-CCeeEEEeCCH
Confidence            699999999999999999999 99999999874

>PRK02705 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional

Probab=93.19  E-value=0.094  Score=59.25  Aligned_cols=33  Identities=15%  Similarity=0.228  Sum_probs=30.3

Q ss_pred             cEEEECCcHHHHHHHHHHHhcCCCcEEEEccCCC
Q psy14408        435 DIIIVGASAAGCVLANRLSEVSSLKVLLIEAGGD  468 (720)
Q Consensus       435 DVVIIGSGiAGLvAA~~LAea~G~KVLVLEKG~~  468 (720)
                      -|+|||.|.+|+++|..|+++ |++|++.|+...
T Consensus         2 ~v~viG~G~sG~s~a~~l~~~-G~~V~~~D~~~~   34 (459)
T PRK02705          2 IAHVIGLGRSGIAAARLLKAQ-GWEVVVSDRNDS   34 (459)
T ss_pred             eEEEEccCHHHHHHHHHHHHC-CCEEEEECCCCc
Confidence            389999999999999999999 999999998654

>COG5044 MRS6 RAB proteins geranylgeranyltransferase component A (RAB escort protein) [Posttranslational modification, protein turnover, chaperones]

Probab=93.15  E-value=0.11  Score=57.75  Aligned_cols=39  Identities=26%  Similarity=0.306  Sum_probs=35.9

Q ss_pred             cccEEEECCcHHHHHHHHHHHhcCCCcEEEEccCCCCCCC
Q psy14408        433 CFDIIIVGASAAGCVLANRLSEVSSLKVLLIEAGGDTPIH  472 (720)
Q Consensus       433 eyDVVIIGSGiAGLvAA~~LAea~G~KVLVLEKG~~~~~s  472 (720)
                      +|||||+|-|+.-++.+..|+.+ |.+|+++||++..+..
T Consensus         6 ~yDvii~GTgl~esils~~Ls~~-~k~VlhiD~Nd~YG~~   44 (434)
T COG5044           6 LYDVIILGTGLRESILSAALSWD-GKNVLHIDKNDYYGST   44 (434)
T ss_pred             cccEEEecccHHHHHHHHHhhhc-CceEEEEeCCCccCcc
Confidence            69999999999999999999999 9999999999877443

>PRK06370 mercuric reductase; Validated

Probab=93.07  E-value=0.11  Score=59.05  Aligned_cols=34  Identities=24%  Similarity=0.399  Sum_probs=32.1

Q ss_pred             cEEEECCcHHHHHHHHHHHhcCCCcEEEEccCCCC
Q psy14408        435 DIIIVGASAAGCVLANRLSEVSSLKVLLIEAGGDT  469 (720)
Q Consensus       435 DVVIIGSGiAGLvAA~~LAea~G~KVLVLEKG~~~  469 (720)
                      .|+|||+|..|+-+|..|++. |.+|+|+|++...
T Consensus       173 ~vvVIGgG~~g~E~A~~l~~~-G~~Vtli~~~~~~  206 (463)
T PRK06370        173 HLVIIGGGYIGLEFAQMFRRF-GSEVTVIERGPRL  206 (463)
T ss_pred             EEEEECCCHHHHHHHHHHHHc-CCeEEEEEcCCCC
Confidence            899999999999999999999 9999999998765

>COG0569 TrkA K+ transport systems, NAD-binding component [Inorganic ion transport and metabolism]

Probab=93.00  E-value=0.1  Score=54.10  Aligned_cols=33  Identities=39%  Similarity=0.579  Sum_probs=30.8

Q ss_pred             cEEEECCcHHHHHHHHHHHhcCCCcEEEEccCCC
Q psy14408        435 DIIIVGASAAGCVLANRLSEVSSLKVLLIEAGGD  468 (720)
Q Consensus       435 DVVIIGSGiAGLvAA~~LAea~G~KVLVLEKG~~  468 (720)
                      .+||||+|-.|...|..|++. |+.|+++|+...
T Consensus         2 ~iiIiG~G~vG~~va~~L~~~-g~~Vv~Id~d~~   34 (225)
T COG0569           2 KIIIIGAGRVGRSVARELSEE-GHNVVLIDRDEE   34 (225)
T ss_pred             EEEEECCcHHHHHHHHHHHhC-CCceEEEEcCHH
Confidence            689999999999999999999 999999998743

>PF13738 Pyr_redox_3: Pyridine nucleotide-disulphide oxidoreductase; PDB: 3D1C_A 4A9W_B 2YLX_A 2YM2_A 2YLW_A 2YLR_A 2YM1_A 2YLS_A 1W4X_A 2YLT_A

Probab=92.99  E-value=0.091  Score=51.84  Aligned_cols=33  Identities=18%  Similarity=0.308  Sum_probs=28.4

Q ss_pred             ccEEEECCcHHHHHHHHHHHhcCCCcEEEEccCC
Q psy14408        434 FDIIIVGASAAGCVLANRLSEVSSLKVLLIEAGG  467 (720)
Q Consensus       434 yDVVIIGSGiAGLvAA~~LAea~G~KVLVLEKG~  467 (720)
                      -.|+|||+|.+|.-+|..|++. |.+|+|+=|.+
T Consensus       168 k~V~VVG~G~SA~d~a~~l~~~-g~~V~~~~R~~  200 (203)
T PF13738_consen  168 KRVVVVGGGNSAVDIAYALAKA-GKSVTLVTRSP  200 (203)
T ss_dssp             SEEEEE--SHHHHHHHHHHTTT-CSEEEEEESS-
T ss_pred             CcEEEEcChHHHHHHHHHHHhh-CCEEEEEecCC
Confidence            4899999999999999999999 99999998874

...

>PRK07846 mycothione reductase; Reviewed

Probab=92.95  E-value=0.11  Score=58.95  Aligned_cols=34  Identities=21%  Similarity=0.437  Sum_probs=32.0

Q ss_pred             cEEEECCcHHHHHHHHHHHhcCCCcEEEEccCCCC
Q psy14408        435 DIIIVGASAAGCVLANRLSEVSSLKVLLIEAGGDT  469 (720)
Q Consensus       435 DVVIIGSGiAGLvAA~~LAea~G~KVLVLEKG~~~  469 (720)
                      .|+|||||..|+-+|..|++. |.+|+|||++...
T Consensus       168 ~vvIIGgG~iG~E~A~~l~~~-G~~Vtli~~~~~l  201 (451)
T PRK07846        168 SLVIVGGGFIAAEFAHVFSAL-GVRVTVVNRSGRL  201 (451)
T ss_pred             eEEEECCCHHHHHHHHHHHHc-CCeEEEEEcCCcc
Confidence            899999999999999999998 9999999998654

>PRK06416 dihydrolipoamide dehydrogenase; Reviewed

Probab=92.78  E-value=0.12  Score=58.36  Aligned_cols=34  Identities=18%  Similarity=0.365  Sum_probs=31.9

Q ss_pred             cEEEECCcHHHHHHHHHHHhcCCCcEEEEccCCCC
Q psy14408        435 DIIIVGASAAGCVLANRLSEVSSLKVLLIEAGGDT  469 (720)
Q Consensus       435 DVVIIGSGiAGLvAA~~LAea~G~KVLVLEKG~~~  469 (720)
                      .|+|||+|..|+-+|..|++. |.+|+|+|++...
T Consensus       174 ~vvVvGgG~~g~E~A~~l~~~-g~~Vtli~~~~~~  207 (462)
T PRK06416        174 SLVVIGGGYIGVEFASAYASL-GAEVTIVEALPRI  207 (462)
T ss_pred             eEEEECCCHHHHHHHHHHHHc-CCeEEEEEcCCCc
Confidence            799999999999999999999 9999999998654

>PRK08293 3-hydroxybutyryl-CoA dehydrogenase; Validated

Probab=92.61  E-value=0.13  Score=54.76  Aligned_cols=32  Identities=16%  Similarity=0.297  Sum_probs=29.8

Q ss_pred             cEEEECCcHHHHHHHHHHHhcCCCcEEEEccCC
Q psy14408        435 DIIIVGASAAGCVLANRLSEVSSLKVLLIEAGG  467 (720)
Q Consensus       435 DVVIIGSGiAGLvAA~~LAea~G~KVLVLEKG~  467 (720)
                      .|.|||+|..|...|..|+++ |++|+++|+..
T Consensus         5 kIaViGaG~mG~~iA~~la~~-G~~V~l~d~~~   36 (287)
T PRK08293          5 NVTVAGAGVLGSQIAFQTAFH-GFDVTIYDISD   36 (287)
T ss_pred             EEEEECCCHHHHHHHHHHHhc-CCeEEEEeCCH
Confidence            599999999999999999999 99999999763

>COG4529 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=92.61  E-value=0.15  Score=58.22  Aligned_cols=37  Identities=22%  Similarity=0.324  Sum_probs=30.5

Q ss_pred             ccEEEECCcHHHHHHHHHHHhcC--CCcEEEEccCCCCC
Q psy14408        434 FDIIIVGASAAGCVLANRLSEVS--SLKVLLIEAGGDTP  470 (720)
Q Consensus       434 yDVVIIGSGiAGLvAA~~LAea~--G~KVLVLEKG~~~~  470 (720)
                      ++|+|||+|.+|+++|.+|.+.+  -.+|.|+|+....+
T Consensus         2 ~~VAIIGgG~sGi~~A~~Ll~~~~~~~~Isi~e~~~~~G   40 (474)
T COG4529           2 FKVAIIGGGFSGIYMAAHLLKSPRPSGLISIFEPRPNFG   40 (474)
T ss_pred             ceEEEECCchHHHHHHHHHHhCCCCCCceEEeccccccC
Confidence            58999999999999999999852  22399999876663

>PRK09260 3-hydroxybutyryl-CoA dehydrogenase; Validated

Probab=92.59  E-value=0.14  Score=54.67  Aligned_cols=32  Identities=19%  Similarity=0.359  Sum_probs=29.8

Q ss_pred             cEEEECCcHHHHHHHHHHHhcCCCcEEEEccCC
Q psy14408        435 DIIIVGASAAGCVLANRLSEVSSLKVLLIEAGG  467 (720)
Q Consensus       435 DVVIIGSGiAGLvAA~~LAea~G~KVLVLEKG~  467 (720)
                      .|.|||+|..|...|..|+++ |++|+++|+..
T Consensus         3 ~V~VIG~G~mG~~iA~~la~~-G~~V~~~d~~~   34 (288)
T PRK09260          3 KLVVVGAGVMGRGIAYVFAVS-GFQTTLVDIKQ   34 (288)
T ss_pred             EEEEECccHHHHHHHHHHHhC-CCcEEEEeCCH
Confidence            489999999999999999999 99999999863

>PRK13512 coenzyme A disulfide reductase; Provisional

Probab=92.54  E-value=0.13  Score=58.10  Aligned_cols=34  Identities=24%  Similarity=0.276  Sum_probs=31.8

Q ss_pred             cEEEECCcHHHHHHHHHHHhcCCCcEEEEccCCCC
Q psy14408        435 DIIIVGASAAGCVLANRLSEVSSLKVLLIEAGGDT  469 (720)
Q Consensus       435 DVVIIGSGiAGLvAA~~LAea~G~KVLVLEKG~~~  469 (720)
                      .|+|||||..|+-+|..|++. |.+|+|+|++...
T Consensus       150 ~vvViGgG~ig~E~A~~l~~~-g~~Vtli~~~~~l  183 (438)
T PRK13512        150 KALVVGAGYISLEVLENLYER-GLHPTLIHRSDKI  183 (438)
T ss_pred             EEEEECCCHHHHHHHHHHHhC-CCcEEEEeccccc
Confidence            799999999999999999999 9999999998654

>PRK06522 2-dehydropantoate 2-reductase; Reviewed

Probab=92.40  E-value=0.14  Score=54.14  Aligned_cols=31  Identities=29%  Similarity=0.453  Sum_probs=29.1

Q ss_pred             cEEEECCcHHHHHHHHHHHhcCCCcEEEEccC
Q psy14408        435 DIIIVGASAAGCVLANRLSEVSSLKVLLIEAG  466 (720)
Q Consensus       435 DVVIIGSGiAGLvAA~~LAea~G~KVLVLEKG  466 (720)
                      .|.|||+|..|...|..|+++ |++|++++|.
T Consensus         2 ~I~IiG~G~~G~~~a~~L~~~-g~~V~~~~r~   32 (304)
T PRK06522          2 KIAILGAGAIGGLFGAALAQA-GHDVTLVARR   32 (304)
T ss_pred             EEEEECCCHHHHHHHHHHHhC-CCeEEEEECC
Confidence            489999999999999999999 9999999984

>PRK05708 2-dehydropantoate 2-reductase; Provisional

Probab=92.38  E-value=0.14  Score=55.27  Aligned_cols=32  Identities=34%  Similarity=0.402  Sum_probs=30.3

Q ss_pred             cEEEECCcHHHHHHHHHHHhcCCCcEEEEccCC
Q psy14408        435 DIIIVGASAAGCVLANRLSEVSSLKVLLIEAGG  467 (720)
Q Consensus       435 DVVIIGSGiAGLvAA~~LAea~G~KVLVLEKG~  467 (720)
                      .|.|||+|..|+..|.+|+++ |.+|+++.|+.
T Consensus         4 ~I~IiGaGaiG~~~a~~L~~~-G~~V~lv~r~~   35 (305)
T PRK05708          4 TWHILGAGSLGSLWACRLARA-GLPVRLILRDR   35 (305)
T ss_pred             eEEEECCCHHHHHHHHHHHhC-CCCeEEEEech
Confidence            699999999999999999999 99999999973

>PRK12921 2-dehydropantoate 2-reductase; Provisional

Probab=92.28  E-value=0.15  Score=54.16  Aligned_cols=31  Identities=32%  Similarity=0.438  Sum_probs=29.1

Q ss_pred             cEEEECCcHHHHHHHHHHHhcCCCcEEEEccC
Q psy14408        435 DIIIVGASAAGCVLANRLSEVSSLKVLLIEAG  466 (720)
Q Consensus       435 DVVIIGSGiAGLvAA~~LAea~G~KVLVLEKG  466 (720)
                      .|.|||+|..|+..|..|+++ |++|++++|+
T Consensus         2 kI~IiG~G~iG~~~a~~L~~~-g~~V~~~~r~   32 (305)
T PRK12921          2 RIAVVGAGAVGGTFGGRLLEA-GRDVTFLVRP   32 (305)
T ss_pred             eEEEECCCHHHHHHHHHHHHC-CCceEEEecH
Confidence            489999999999999999999 9999999983

>PRK14106 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional

Probab=92.19  E-value=0.15  Score=57.38  Aligned_cols=33  Identities=30%  Similarity=0.499  Sum_probs=30.8

Q ss_pred             ccEEEECCcHHHHHHHHHHHhcCCCcEEEEccCC
Q psy14408        434 FDIIIVGASAAGCVLANRLSEVSSLKVLLIEAGG  467 (720)
Q Consensus       434 yDVVIIGSGiAGLvAA~~LAea~G~KVLVLEKG~  467 (720)
                      -.|+|||+|..|+.+|..|+++ |++|+++|+..
T Consensus         6 k~v~iiG~g~~G~~~A~~l~~~-G~~V~~~d~~~   38 (450)
T PRK14106          6 KKVLVVGAGVSGLALAKFLKKL-GAKVILTDEKE   38 (450)
T ss_pred             CEEEEECCCHHHHHHHHHHHHC-CCEEEEEeCCc
Confidence            4799999999999999999999 99999999864

>COG1249 Lpd Pyruvate/2-oxoglutarate dehydrogenase complex, dihydrolipoamide dehydrogenase (E3) component, and related enzymes [Energy production and conversion]

Probab=91.98  E-value=0.18  Score=57.71  Aligned_cols=34  Identities=26%  Similarity=0.462  Sum_probs=32.5

Q ss_pred             cEEEECCcHHHHHHHHHHHhcCCCcEEEEccCCCC
Q psy14408        435 DIIIVGASAAGCVLANRLSEVSSLKVLLIEAGGDT  469 (720)
Q Consensus       435 DVVIIGSGiAGLvAA~~LAea~G~KVLVLEKG~~~  469 (720)
                      .++|||||..|+-.|.-+++- |.+|+|||+++..
T Consensus       175 ~lvIiGgG~IGlE~a~~~~~L-G~~VTiie~~~~i  208 (454)
T COG1249         175 SLVIVGGGYIGLEFASVFAAL-GSKVTVVERGDRI  208 (454)
T ss_pred             EEEEECCCHHHHHHHHHHHHc-CCcEEEEecCCCC
Confidence            699999999999999999999 9999999999876

>TIGR03452 mycothione_red mycothione reductase

Probab=91.95  E-value=0.18  Score=57.25  Aligned_cols=34  Identities=18%  Similarity=0.350  Sum_probs=31.8

Q ss_pred             cEEEECCcHHHHHHHHHHHhcCCCcEEEEccCCCC
Q psy14408        435 DIIIVGASAAGCVLANRLSEVSSLKVLLIEAGGDT  469 (720)
Q Consensus       435 DVVIIGSGiAGLvAA~~LAea~G~KVLVLEKG~~~  469 (720)
                      .|+|||+|..|+-+|..|++. |.+|+|||++...
T Consensus       171 ~vvVIGgG~ig~E~A~~l~~~-G~~Vtli~~~~~l  204 (452)
T TIGR03452       171 SLVIVGGGYIAAEFAHVFSAL-GTRVTIVNRSTKL  204 (452)
T ss_pred             cEEEECCCHHHHHHHHHHHhC-CCcEEEEEccCcc
Confidence            899999999999999999999 9999999998654

Mycothiol, a glutathione analog in Mycobacterium tuberculosis and related species, can form a disulfide-linked dimer called mycothione. This enzyme can reduce mycothione to regenerate two mycothiol molecules. The enzyme shows some sequence similarity to glutathione-disulfide reductase, trypanothione-disulfide reductase, and dihydrolipoamide dehydrogenase. The characterized protein from M. tuberculosis, a homodimer, has FAD as a cofactor, one per monomer, and uses NADPH as a substrate.

>KOG4405|consensus

Probab=91.93  E-value=0.15  Score=57.22  Aligned_cols=40  Identities=20%  Similarity=0.303  Sum_probs=36.0

Q ss_pred             CCcccEEEECCcHHHHHHHHHHHhcCCCcEEEEccCCCCCC
Q psy14408        431 GDCFDIIIVGASAAGCVLANRLSEVSSLKVLLIEAGGDTPI  471 (720)
Q Consensus       431 d~eyDVVIIGSGiAGLvAA~~LAea~G~KVLVLEKG~~~~~  471 (720)
                      ..+|||||||-|..-...|...++. |.+||=||++.+.++
T Consensus         6 P~~fDvVViGTGlpESilAAAcSrs-G~sVLHlDsn~yYGg   45 (547)
T KOG4405|consen    6 PEEFDVVVIGTGLPESILAAACSRS-GSSVLHLDSNEYYGG   45 (547)
T ss_pred             chhccEEEEcCCCcHHHHHHHhhhc-CCceEeccCccccCC
Confidence            4579999999999999999999999 999999999876643

>PRK07819 3-hydroxybutyryl-CoA dehydrogenase; Validated

Probab=91.81  E-value=0.18  Score=54.03  Aligned_cols=33  Identities=24%  Similarity=0.397  Sum_probs=30.4

Q ss_pred             cEEEECCcHHHHHHHHHHHhcCCCcEEEEccCCC
Q psy14408        435 DIIIVGASAAGCVLANRLSEVSSLKVLLIEAGGD  468 (720)
Q Consensus       435 DVVIIGSGiAGLvAA~~LAea~G~KVLVLEKG~~  468 (720)
                      -|.|||+|..|...|..|+++ |++|+|+|+...
T Consensus         7 ~V~ViGaG~mG~~iA~~~a~~-G~~V~l~d~~~~   39 (286)
T PRK07819          7 RVGVVGAGQMGAGIAEVCARA-GVDVLVFETTEE   39 (286)
T ss_pred             EEEEEcccHHHHHHHHHHHhC-CCEEEEEECCHH
Confidence            589999999999999999999 999999998643

>PRK09564 coenzyme A disulfide reductase; Reviewed

Probab=91.74  E-value=0.2  Score=56.25  Aligned_cols=35  Identities=20%  Similarity=0.277  Sum_probs=31.8

Q ss_pred             ccEEEECCcHHHHHHHHHHHhcCCCcEEEEccCCCC
Q psy14408        434 FDIIIVGASAAGCVLANRLSEVSSLKVLLIEAGGDT  469 (720)
Q Consensus       434 yDVVIIGSGiAGLvAA~~LAea~G~KVLVLEKG~~~  469 (720)
                      -.|||||+|.+|+-+|..|++. |.+|+|+|++...
T Consensus       150 ~~vvVvGgG~~g~e~A~~l~~~-g~~Vtli~~~~~~  184 (444)
T PRK09564        150 KNIVIIGAGFIGLEAVEAAKHL-GKNVRIIQLEDRI  184 (444)
T ss_pred             CEEEEECCCHHHHHHHHHHHhc-CCcEEEEeCCccc
Confidence            3899999999999999999999 9999999988643

>TIGR01424 gluta_reduc_2 glutathione-disulfide reductase, plant

Probab=91.61  E-value=0.2  Score=56.59  Aligned_cols=34  Identities=24%  Similarity=0.300  Sum_probs=31.7

Q ss_pred             cEEEECCcHHHHHHHHHHHhcCCCcEEEEccCCCC
Q psy14408        435 DIIIVGASAAGCVLANRLSEVSSLKVLLIEAGGDT  469 (720)
Q Consensus       435 DVVIIGSGiAGLvAA~~LAea~G~KVLVLEKG~~~  469 (720)
                      .|+|||+|..|+-+|..|++. |.+|+|+|++...
T Consensus       168 ~vvVIGgG~~g~E~A~~l~~~-G~~Vtli~~~~~~  201 (446)
T TIGR01424       168 SILILGGGYIAVEFAGIWRGL-GVQVTLIYRGELI  201 (446)
T ss_pred             eEEEECCcHHHHHHHHHHHHc-CCeEEEEEeCCCC
Confidence            799999999999999999998 9999999998654

The tripeptide glutathione is an important reductant, e.g., for maintaining the cellular thiol/disulfide status and for protecting against reactive oxygen species such as hydrogen peroxide. Glutathione-disulfide reductase regenerates reduced glutathione from oxidized glutathione (glutathione disulfide) + NADPH. This model represents one of two closely related subfamilies of glutathione-disulfide reductase. Both are closely related to trypanothione reductase, and separate models are built so each of the three can describe proteins with conserved function. This model describes glutathione-disulfide reductases of plants and some bacteria, including cyanobacteria.

>KOG2755|consensus

Probab=91.61  E-value=0.13  Score=54.88  Aligned_cols=34  Identities=35%  Similarity=0.534  Sum_probs=29.4

Q ss_pred             EEEECCcHHHHHHHHHHHhc-CCCcEEEEccCCCC
Q psy14408        436 IIIVGASAAGCVLANRLSEV-SSLKVLLIEAGGDT  469 (720)
Q Consensus       436 VVIIGSGiAGLvAA~~LAea-~G~KVLVLEKG~~~  469 (720)
                      .||||||++|.+||-+||.. +...|+||-+....
T Consensus         2 fivvgggiagvscaeqla~~~psa~illitass~v   36 (334)
T KOG2755|consen    2 FIVVGGGIAGVSCAEQLAQLEPSAEILLITASSFV   36 (334)
T ss_pred             eEEEcCccccccHHHHHHhhCCCCcEEEEeccHHH
Confidence            69999999999999999973 47899999986554

>TIGR03140 AhpF alkyl hydroperoxide reductase, F subunit

Probab=91.58  E-value=0.19  Score=58.17  Aligned_cols=34  Identities=21%  Similarity=0.374  Sum_probs=31.4

Q ss_pred             cEEEECCcHHHHHHHHHHHhcCCCcEEEEccCCCC
Q psy14408        435 DIIIVGASAAGCVLANRLSEVSSLKVLLIEAGGDT  469 (720)
Q Consensus       435 DVVIIGSGiAGLvAA~~LAea~G~KVLVLEKG~~~  469 (720)
                      .|+|||||..|+-+|..|++. |.+|+|+|+++..
T Consensus       354 ~VvViGgG~~g~E~A~~L~~~-g~~Vtli~~~~~l  387 (515)
T TIGR03140       354 DVAVIGGGNSGIEAAIDLAGI-VRHVTVLEFADEL  387 (515)
T ss_pred             EEEEECCcHHHHHHHHHHHhc-CcEEEEEEeCCcC
Confidence            899999999999999999998 9999999987544

This enzyme is the partner of the peroxiredoxin (alkyl hydroperoxide reductase) AhpC which contains the peroxide-reactive cysteine. AhpF contains the reductant (NAD(P)H) binding domain (pfam00070) and presumably acts to resolve the disulfide which forms after oxidation of the active site cysteine in AphC. This proteins contains two paired conserved cysteine motifs, CxxCP and CxHCDGP.

>PRK07066 3-hydroxybutyryl-CoA dehydrogenase; Validated

Probab=91.55  E-value=0.2  Score=54.96  Aligned_cols=32  Identities=16%  Similarity=0.219  Sum_probs=29.8

Q ss_pred             cEEEECCcHHHHHHHHHHHhcCCCcEEEEccCC
Q psy14408        435 DIIIVGASAAGCVLANRLSEVSSLKVLLIEAGG  467 (720)
Q Consensus       435 DVVIIGSGiAGLvAA~~LAea~G~KVLVLEKG~  467 (720)
                      -|.|||+|..|...|..++.+ |++|+|+|+..
T Consensus         9 ~VaVIGaG~MG~giA~~~a~a-G~~V~l~D~~~   40 (321)
T PRK07066          9 TFAAIGSGVIGSGWVARALAH-GLDVVAWDPAP   40 (321)
T ss_pred             EEEEECcCHHHHHHHHHHHhC-CCeEEEEeCCH
Confidence            489999999999999999999 99999999753

>PRK07530 3-hydroxybutyryl-CoA dehydrogenase; Validated

Probab=91.54  E-value=0.21  Score=53.25  Aligned_cols=31  Identities=23%  Similarity=0.317  Sum_probs=29.5

Q ss_pred             cEEEECCcHHHHHHHHHHHhcCCCcEEEEccC
Q psy14408        435 DIIIVGASAAGCVLANRLSEVSSLKVLLIEAG  466 (720)
Q Consensus       435 DVVIIGSGiAGLvAA~~LAea~G~KVLVLEKG  466 (720)
                      .|.|||+|..|...|..|+++ |++|+|+|+.
T Consensus         6 kI~vIGaG~mG~~iA~~la~~-G~~V~l~d~~   36 (292)
T PRK07530          6 KVGVIGAGQMGNGIAHVCALA-GYDVLLNDVS   36 (292)
T ss_pred             EEEEECCcHHHHHHHHHHHHC-CCeEEEEeCC
Confidence            599999999999999999999 9999999985

>KOG1800|consensus

Probab=91.54  E-value=0.21  Score=55.67  Aligned_cols=35  Identities=26%  Similarity=0.253  Sum_probs=31.5

Q ss_pred             cEEEECCcHHHHHHHHHHHhc-CCCcEEEEccCCCC
Q psy14408        435 DIIIVGASAAGCVLANRLSEV-SSLKVLLIEAGGDT  469 (720)
Q Consensus       435 DVVIIGSGiAGLvAA~~LAea-~G~KVLVLEKG~~~  469 (720)
                      -|.|||||++|+-+|.+|-++ .+++|.|+||.+.+
T Consensus        22 ~vcIVGsGPAGfYtA~~LLk~~~~~~Vdi~Ek~PvP   57 (468)
T KOG1800|consen   22 RVCIVGSGPAGFYTAQHLLKRHPNAHVDIFEKLPVP   57 (468)
T ss_pred             eEEEECCCchHHHHHHHHHhcCCCCeeEeeecCCcc
Confidence            899999999999999999884 47999999998765

>PRK06249 2-dehydropantoate 2-reductase; Provisional

Probab=91.51  E-value=0.24  Score=53.47  Aligned_cols=32  Identities=22%  Similarity=0.320  Sum_probs=30.3

Q ss_pred             cEEEECCcHHHHHHHHHHHhcCCCcEEEEccCC
Q psy14408        435 DIIIVGASAAGCVLANRLSEVSSLKVLLIEAGG  467 (720)
Q Consensus       435 DVVIIGSGiAGLvAA~~LAea~G~KVLVLEKG~  467 (720)
                      .|.|||+|..|+..|..|+++ |++|+++.|+.
T Consensus         7 ~I~IiG~GaiG~~lA~~L~~~-g~~V~~~~r~~   38 (313)
T PRK06249          7 RIGIIGTGAIGGFYGAMLARA-GFDVHFLLRSD   38 (313)
T ss_pred             EEEEECCCHHHHHHHHHHHHC-CCeEEEEEeCC
Confidence            699999999999999999999 99999999974

>PRK08229 2-dehydropantoate 2-reductase; Provisional

Probab=91.41  E-value=0.21  Score=54.16  Aligned_cols=32  Identities=34%  Similarity=0.593  Sum_probs=30.1

Q ss_pred             cEEEECCcHHHHHHHHHHHhcCCCcEEEEccCC
Q psy14408        435 DIIIVGASAAGCVLANRLSEVSSLKVLLIEAGG  467 (720)
Q Consensus       435 DVVIIGSGiAGLvAA~~LAea~G~KVLVLEKG~  467 (720)
                      .|.|||+|..|...|..|+++ |++|++++|..
T Consensus         4 kI~IiG~G~mG~~~A~~L~~~-G~~V~~~~r~~   35 (341)
T PRK08229          4 RICVLGAGSIGCYLGGRLAAA-GADVTLIGRAR   35 (341)
T ss_pred             eEEEECCCHHHHHHHHHHHhc-CCcEEEEecHH
Confidence            599999999999999999999 99999999863

>PRK10262 thioredoxin reductase; Provisional

Probab=91.34  E-value=0.22  Score=53.43  Aligned_cols=33  Identities=21%  Similarity=0.296  Sum_probs=31.1

Q ss_pred             cEEEECCcHHHHHHHHHHHhcCCCcEEEEccCCC
Q psy14408        435 DIIIVGASAAGCVLANRLSEVSSLKVLLIEAGGD  468 (720)
Q Consensus       435 DVVIIGSGiAGLvAA~~LAea~G~KVLVLEKG~~  468 (720)
                      .|+|||+|..|+-+|..|++. |.+|+|+++...
T Consensus       148 ~vvVvGgG~~g~e~A~~l~~~-~~~Vtlv~~~~~  180 (321)
T PRK10262        148 KVAVIGGGNTAVEEALYLSNI-ASEVHLIHRRDG  180 (321)
T ss_pred             EEEEECCCHHHHHHHHHHHhh-CCEEEEEEECCc
Confidence            899999999999999999999 999999999854

>COG1004 Ugd Predicted UDP-glucose 6-dehydrogenase [Cell envelope biogenesis, outer membrane]

Probab=91.31  E-value=0.2  Score=56.18  Aligned_cols=31  Identities=23%  Similarity=0.429  Sum_probs=29.0

Q ss_pred             cEEEECCcHHHHHHHHHHHhcCCCcEEEEccC
Q psy14408        435 DIIIVGASAAGCVLANRLSEVSSLKVLLIEAG  466 (720)
Q Consensus       435 DVVIIGSGiAGLvAA~~LAea~G~KVLVLEKG  466 (720)
                      .|.|||+|..||++|.-||+. ||.|+.+|..
T Consensus         2 kI~viGtGYVGLv~g~~lA~~-GHeVv~vDid   32 (414)
T COG1004           2 KITVIGTGYVGLVTGACLAEL-GHEVVCVDID   32 (414)
T ss_pred             ceEEECCchHHHHHHHHHHHc-CCeEEEEeCC
Confidence            578999999999999999999 9999999963

>PRK06035 3-hydroxyacyl-CoA dehydrogenase; Validated

Probab=91.08  E-value=0.25  Score=52.74  Aligned_cols=32  Identities=19%  Similarity=0.316  Sum_probs=29.9

Q ss_pred             cEEEECCcHHHHHHHHHHHhcCCCcEEEEccCC
Q psy14408        435 DIIIVGASAAGCVLANRLSEVSSLKVLLIEAGG  467 (720)
Q Consensus       435 DVVIIGSGiAGLvAA~~LAea~G~KVLVLEKG~  467 (720)
                      .|.|||+|..|...|..|+++ |++|+++|+..
T Consensus         5 ~I~ViGaG~mG~~iA~~la~~-G~~V~l~d~~~   36 (291)
T PRK06035          5 VIGVVGSGVMGQGIAQVFART-GYDVTIVDVSE   36 (291)
T ss_pred             EEEEECccHHHHHHHHHHHhc-CCeEEEEeCCH
Confidence            589999999999999999999 99999999864

>TIGR01316 gltA glutamate synthase (NADPH), homotetrameric

Probab=91.08  E-value=0.23  Score=56.38  Aligned_cols=33  Identities=9%  Similarity=0.155  Sum_probs=30.9

Q ss_pred             cEEEECCcHHHHHHHHHHHhcCCCcEEEEccCCC
Q psy14408        435 DIIIVGASAAGCVLANRLSEVSSLKVLLIEAGGD  468 (720)
Q Consensus       435 DVVIIGSGiAGLvAA~~LAea~G~KVLVLEKG~~  468 (720)
                      .|||||+|..|+-+|..|++. |.+|+||++...
T Consensus       274 ~VvVIGgG~~a~d~A~~l~~~-G~~Vtlv~~~~~  306 (449)
T TIGR01316       274 SVVVIGGGNTAVDSARTALRL-GAEVHCLYRRTR  306 (449)
T ss_pred             eEEEECCCHHHHHHHHHHHHc-CCEEEEEeecCc
Confidence            899999999999999999999 999999998743

This protein is homologous to the small subunit of NADPH and NADH forms of glutamate synthase as found in eukaryotes and some bacteria. This protein is found in numerous species having no homolog of the glutamate synthase large subunit. The prototype of the family, from Pyrococcus sp. KOD1, was shown to be active as a homotetramer and to require NADPH.

>PF02254 TrkA_N: TrkA-N domain; InterPro: IPR003148 The regulator of K+ conductance (RCK) domain is found in many ligand-gated K+ channels, most often attached to the intracellular carboxy terminus

Probab=91.03  E-value=0.32  Score=44.16  Aligned_cols=30  Identities=27%  Similarity=0.535  Sum_probs=27.7

Q ss_pred             EEEECCcHHHHHHHHHHHhcCCCcEEEEccC
Q psy14408        436 IIIVGASAAGCVLANRLSEVSSLKVLLIEAG  466 (720)
Q Consensus       436 VVIIGSGiAGLvAA~~LAea~G~KVLVLEKG  466 (720)
                      |||||.|-.|..+|..|.+. |.+|+|+|+.
T Consensus         1 vvI~G~g~~~~~i~~~L~~~-~~~vvvid~d   30 (116)
T PF02254_consen    1 VVIIGYGRIGREIAEQLKEG-GIDVVVIDRD   30 (116)
T ss_dssp             EEEES-SHHHHHHHHHHHHT-TSEEEEEESS
T ss_pred             eEEEcCCHHHHHHHHHHHhC-CCEEEEEECC
Confidence            79999999999999999997 8999999987

The domain is prevalent among prokaryotic K+ channels, and also found in eukaryotic, high-conductance Ca2+-activated K+ channels (BK channels) [, , ]. Largely involved in redox-linked regulation of potassium channels, the N-terminal part of the RCK domain is predicted to be an active dehydrogenase at least in some cases []. Some have a conserved sequence motif (G-x-G-x-x-G-x(n)-[DE]) for NAD+ binding [], but others do not, reflecting the diversity of ligands for RCK domains. The C-terminal part is less conserved, being absent in some channels, such as the kefC antiporter from Escherichia coli. It is predicted to bind unidentified ligands and to regulate sulphate, sodium and other transporters. The X-ray structure of several RCK domains has been solved [, , ]. It reveals an alpha-beta fold similar to dehydrogenase enzymes. The domain forms a homodimer, producing a cleft between two lobes. It has a composite structure, with an N-terminal (RCK-N), and a C-terminal (RCK-C) subdomain. The RCK-N subdomain forms a Rossmann fold with two alpha helices on one side of a six stranded parallel beta sheet and three alpha helices on the other side. The RCK-C subdomain is an all-beta-strand fold. It forms an extention of the dimer interface and further stabilises the RCK homodimer [, , ]. Ca2+ is a ligand that opens the channel in a concentration-dependent manner. Two Ca2+ ions are located at the base of a cleft between two RCK domains, coordinated by the carboxylate groups of two glutamate residues, and by an aspartate residue [, , ]. RCK domains occur in at least five different contexts: As a single domain on the C terminus of some K+ channels (for example, many prokaryotic K+ channels). As two tandem RCK domains on the C terminus of some transporters that form gating rings (for example, eukaryotic BK channels). The gating ring has an arrangement of eight identical RCK domains, one from each of the four pore-forming subunits and four from the intracellular solution. As two domains, one at the N terminus and another at the C terminus of transporter (for example, the prokaryotic trk system potassium uptake protein A). As a soluble protein (not part of a K+ channel) consisting of two tandem RCK domains. As a soluble protein consisting of a single RCK domain. This entry represents the N-terminal subdomain of RCK.; GO: 0006813 potassium ion transport; PDB: 3L4B_E 1LSS_C 3LLV_A 2FY8_D 2AEF_A 1LNQ_E 3RBX_C 3KXD_A 2AEJ_A 3RBZ_A ....

>TIGR02354 thiF_fam2 thiamine biosynthesis protein ThiF, family 2

Probab=91.03  E-value=0.29  Score=49.99  Aligned_cols=36  Identities=19%  Similarity=0.330  Sum_probs=32.0

Q ss_pred             CCCcccEEEECCcHHHHHHHHHHHhcCCC-cEEEEccC
Q psy14408        430 SGDCFDIIIVGASAAGCVLANRLSEVSSL-KVLLIEAG  466 (720)
Q Consensus       430 ~d~eyDVVIIGSGiAGLvAA~~LAea~G~-KVLVLEKG  466 (720)
                      ......|+|||+|..|..+|..||+. |. +++|+|..
T Consensus        18 ~L~~~~V~IvG~GglGs~ia~~La~~-Gvg~i~lvD~D   54 (200)
T TIGR02354        18 KLEQATVAICGLGGLGSNVAINLARA-GIGKLILVDFD   54 (200)
T ss_pred             HHhCCcEEEECcCHHHHHHHHHHHHc-CCCEEEEECCC
Confidence            34456899999999999999999999 98 59999986

Members of the HesA/MoeB/ThiF family of proteins (pfam00899) include a number of members encoded in the midst of thiamine biosynthetic operons. This mix of known and putative ThiF proteins shows a deep split in phylogenetic trees, with one the E. coli ThiF and the E. coli MoeB proteins seemingly more closely related than E. coli ThiF and Campylobacter (for example) ThiF. This model represents the divergent clade of putative ThiF proteins such found in Campylobacter.

>PTZ00153 lipoamide dehydrogenase; Provisional

Probab=90.91  E-value=0.25  Score=59.14  Aligned_cols=34  Identities=18%  Similarity=0.181  Sum_probs=31.9

Q ss_pred             cEEEECCcHHHHHHHHHHHhcCCCcEEEEccCCCC
Q psy14408        435 DIIIVGASAAGCVLANRLSEVSSLKVLLIEAGGDT  469 (720)
Q Consensus       435 DVVIIGSGiAGLvAA~~LAea~G~KVLVLEKG~~~  469 (720)
                      .|+|||||..|+-.|..|++. |.+|+|||+++..
T Consensus       314 ~VvIVGgG~iGvE~A~~l~~~-G~eVTLIe~~~~l  347 (659)
T PTZ00153        314 YMGIVGMGIIGLEFMDIYTAL-GSEVVSFEYSPQL  347 (659)
T ss_pred             ceEEECCCHHHHHHHHHHHhC-CCeEEEEeccCcc
Confidence            799999999999999999999 9999999998765

>PRK15317 alkyl hydroperoxide reductase subunit F; Provisional

Probab=90.86  E-value=0.24  Score=57.24  Aligned_cols=34  Identities=18%  Similarity=0.320  Sum_probs=31.7

Q ss_pred             cEEEECCcHHHHHHHHHHHhcCCCcEEEEccCCCC
Q psy14408        435 DIIIVGASAAGCVLANRLSEVSSLKVLLIEAGGDT  469 (720)
Q Consensus       435 DVVIIGSGiAGLvAA~~LAea~G~KVLVLEKG~~~  469 (720)
                      +|+|||||..|+-+|..|++. |.+|+|++++...
T Consensus       353 ~VvVVGgG~~g~e~A~~L~~~-~~~Vtlv~~~~~l  386 (517)
T PRK15317        353 RVAVIGGGNSGVEAAIDLAGI-VKHVTVLEFAPEL  386 (517)
T ss_pred             EEEEECCCHHHHHHHHHHHhc-CCEEEEEEECccc
Confidence            899999999999999999998 9999999988644

>TIGR03143 AhpF_homolog putative alkyl hydroperoxide reductase F subunit

Probab=90.83  E-value=0.24  Score=57.93  Aligned_cols=34  Identities=26%  Similarity=0.280  Sum_probs=31.7

Q ss_pred             cEEEECCcHHHHHHHHHHHhcCCCcEEEEccCCCC
Q psy14408        435 DIIIVGASAAGCVLANRLSEVSSLKVLLIEAGGDT  469 (720)
Q Consensus       435 DVVIIGSGiAGLvAA~~LAea~G~KVLVLEKG~~~  469 (720)
                      .|+|||||..|+-+|..|++. |.+|+||+++...
T Consensus       145 ~VvVIGgG~~g~E~A~~L~~~-g~~Vtli~~~~~~  178 (555)
T TIGR03143       145 DVFVIGGGFAAAEEAVFLTRY-ASKVTVIVREPDF  178 (555)
T ss_pred             EEEEECCCHHHHHHHHHHHcc-CCEEEEEEeCCcc
Confidence            899999999999999999998 9999999998653

This family of thioredoxin reductase homologs is found adjacent to alkylhydroperoxide reductase C subunit predominantly in cases where there is only one C subunit in the genome and that genome is lacking the F subunit partner (also a thioredcxin reductase homolog) that is usually found (TIGR03140).

>PRK06718 precorrin-2 dehydrogenase; Reviewed

Probab=90.81  E-value=0.29  Score=50.03  Aligned_cols=32  Identities=19%  Similarity=0.242  Sum_probs=29.8

Q ss_pred             ccEEEECCcHHHHHHHHHHHhcCCCcEEEEccC
Q psy14408        434 FDIIIVGASAAGCVLANRLSEVSSLKVLLIEAG  466 (720)
Q Consensus       434 yDVVIIGSGiAGLvAA~~LAea~G~KVLVLEKG  466 (720)
                      -.|+|||||-.|...|..|.++ |.+|+|+++.
T Consensus        11 k~vLVIGgG~va~~ka~~Ll~~-ga~V~VIs~~   42 (202)
T PRK06718         11 KRVVIVGGGKVAGRRAITLLKY-GAHIVVISPE   42 (202)
T ss_pred             CEEEEECCCHHHHHHHHHHHHC-CCeEEEEcCC
Confidence            4899999999999999999999 9999999864

>PF01488 Shikimate_DH: Shikimate / quinate 5-dehydrogenase; InterPro: IPR006151 This entry represents a domain found in shikimate and quinate dehydrogenases, as well as glutamyl-tRNA reductases

Probab=90.81  E-value=0.33  Score=46.19  Aligned_cols=33  Identities=18%  Similarity=0.372  Sum_probs=30.2

Q ss_pred             cccEEEECCcHHHHHHHHHHHhcCCCc-EEEEccC
Q psy14408        433 CFDIIIVGASAAGCVLANRLSEVSSLK-VLLIEAG  466 (720)
Q Consensus       433 eyDVVIIGSGiAGLvAA~~LAea~G~K-VLVLEKG  466 (720)
                      .-.|+|||+|-+|-.+|..|++. |.+ |+|+-|.
T Consensus        12 ~~~vlviGaGg~ar~v~~~L~~~-g~~~i~i~nRt   45 (135)
T PF01488_consen   12 GKRVLVIGAGGAARAVAAALAAL-GAKEITIVNRT   45 (135)
T ss_dssp             TSEEEEESSSHHHHHHHHHHHHT-TSSEEEEEESS
T ss_pred             CCEEEEECCHHHHHHHHHHHHHc-CCCEEEEEECC
Confidence            34899999999999999999999 987 9999986

Shikimate 5-dehydrogenase (1.1.1.25 from EC) catalyses the conversion of shikimate to 5-dehydroshikimate [, ]. This reaction is part of the shikimate pathway which is involved in the biosynthesis of aromatic amino acids []. Quinate 5-dehydrogenase catalyses the conversion of quinate to 5-dehydroquinate. This reaction is part of the quinate pathway where quinic acid is exploited as a source of carbon in prokaryotes and microbial eukaryotes. Both the shikimate and quinate pathways share two common pathway metabolites, 3-dehydroquinate and dehydroshikimate. Glutamyl-tRNA reductase (1.2.1.70 from EC) catalyzes the first step of tetrapyrrole biosynthesis in plants, archaea and most bacteria. The dimeric enzyme has an unusual V-shaped architecture where each monomer consists of three domains linked by a long 'spinal' alpha-helix. The central catalytic domain specifically recognises the glutamate moiety of the substrate []. ; PDB: 2EV9_B 2CY0_B 1WXD_A 2D5C_A 1NVT_B 2EGG_A 3PWZ_A 3DOO_A 3DON_A 3FBT_C ....

>TIGR02374 nitri_red_nirB nitrite reductase [NAD(P)H], large subunit

Probab=90.78  E-value=0.25  Score=60.22  Aligned_cols=34  Identities=18%  Similarity=0.260  Sum_probs=31.7

Q ss_pred             cEEEECCcHHHHHHHHHHHhcCCCcEEEEccCCCC
Q psy14408        435 DIIIVGASAAGCVLANRLSEVSSLKVLLIEAGGDT  469 (720)
Q Consensus       435 DVVIIGSGiAGLvAA~~LAea~G~KVLVLEKG~~~  469 (720)
                      .|||||||..|+-+|..|++. |.+|+|||+.+..
T Consensus       142 ~vvVVGgG~~GlE~A~~L~~~-G~~Vtvv~~~~~l  175 (785)
T TIGR02374       142 KAAVIGGGLLGLEAAVGLQNL-GMDVSVIHHAPGL  175 (785)
T ss_pred             eEEEECCCHHHHHHHHHHHhc-CCeEEEEccCCch
Confidence            799999999999999999999 9999999988654

>PRK12770 putative glutamate synthase subunit beta; Provisional

Probab=90.60  E-value=0.28  Score=53.56  Aligned_cols=32  Identities=19%  Similarity=0.175  Sum_probs=29.6

Q ss_pred             cEEEECCcHHHHHHHHHHHhcCCCc-EEEEccCC
Q psy14408        435 DIIIVGASAAGCVLANRLSEVSSLK-VLLIEAGG  467 (720)
Q Consensus       435 DVVIIGSGiAGLvAA~~LAea~G~K-VLVLEKG~  467 (720)
                      .|||||+|..|+-+|..|++. |.+ |+|+++..
T Consensus       174 ~vvViG~G~~g~e~A~~l~~~-g~~~Vtvi~~~~  206 (352)
T PRK12770        174 KVVVVGAGLTAVDAALEAVLL-GAEKVYLAYRRT  206 (352)
T ss_pred             EEEEECCCHHHHHHHHHHHHc-CCCeEEEEeecc
Confidence            799999999999999999998 987 99999864

>PRK05808 3-hydroxybutyryl-CoA dehydrogenase; Validated

Probab=90.55  E-value=0.3  Score=51.85  Aligned_cols=31  Identities=19%  Similarity=0.356  Sum_probs=29.3

Q ss_pred             cEEEECCcHHHHHHHHHHHhcCCCcEEEEccC
Q psy14408        435 DIIIVGASAAGCVLANRLSEVSSLKVLLIEAG  466 (720)
Q Consensus       435 DVVIIGSGiAGLvAA~~LAea~G~KVLVLEKG  466 (720)
                      .|.|||+|..|+..|..|+++ |++|+++|+.
T Consensus         5 kI~VIG~G~mG~~ia~~la~~-g~~V~~~d~~   35 (282)
T PRK05808          5 KIGVIGAGTMGNGIAQVCAVA-GYDVVMVDIS   35 (282)
T ss_pred             EEEEEccCHHHHHHHHHHHHC-CCceEEEeCC
Confidence            599999999999999999999 9999999965

>PTZ00058 glutathione reductase; Provisional

Probab=90.55  E-value=0.27  Score=57.70  Aligned_cols=34  Identities=18%  Similarity=0.246  Sum_probs=31.8

Q ss_pred             cEEEECCcHHHHHHHHHHHhcCCCcEEEEccCCCC
Q psy14408        435 DIIIVGASAAGCVLANRLSEVSSLKVLLIEAGGDT  469 (720)
Q Consensus       435 DVVIIGSGiAGLvAA~~LAea~G~KVLVLEKG~~~  469 (720)
                      .|+|||+|..|+-+|..|++. |.+|+|+|++...
T Consensus       239 ~VvIIGgG~iGlE~A~~l~~~-G~~Vtli~~~~~i  272 (561)
T PTZ00058        239 RIGIAGSGYIAVELINVVNRL-GAESYIFARGNRL  272 (561)
T ss_pred             EEEEECCcHHHHHHHHHHHHc-CCcEEEEEecccc
Confidence            799999999999999999999 9999999998654

>TIGR01470 cysG_Nterm siroheme synthase, N-terminal domain

Probab=90.45  E-value=0.33  Score=49.75  Aligned_cols=31  Identities=16%  Similarity=0.252  Sum_probs=29.4

Q ss_pred             cEEEECCcHHHHHHHHHHHhcCCCcEEEEccC
Q psy14408        435 DIIIVGASAAGCVLANRLSEVSSLKVLLIEAG  466 (720)
Q Consensus       435 DVVIIGSGiAGLvAA~~LAea~G~KVLVLEKG  466 (720)
                      -|+|||||..|...|..|.+. |.+|+|++..
T Consensus        11 ~vlVvGgG~va~rk~~~Ll~~-ga~VtVvsp~   41 (205)
T TIGR01470        11 AVLVVGGGDVALRKARLLLKA-GAQLRVIAEE   41 (205)
T ss_pred             eEEEECcCHHHHHHHHHHHHC-CCEEEEEcCC
Confidence            799999999999999999999 9999999864

This model represents a subfamily of CysG N-terminal region-related sequences. All sequences in the seed alignment for this model are N-terminal regions of known or predicted siroheme synthases. The C-terminal region of each is uroporphyrin-III C-methyltransferase (EC 2.1.1.107), which catalyzes the first step committed to the biosynthesis of either siroheme or cobalamin (vitamin B12) rather than protoheme (heme). The region represented by this model completes the process of oxidation and iron insertion to yield siroheme. Siroheme is a cofactor for nitrite and sulfite reductases, so siroheme synthase is CysG of cysteine biosynthesis in some organisms.

>PF01262 AlaDh_PNT_C: Alanine dehydrogenase/PNT, C-terminal domain; InterPro: IPR007698 Alanine dehydrogenases (1

Probab=90.45  E-value=0.35  Score=47.68  Aligned_cols=32  Identities=16%  Similarity=0.246  Sum_probs=28.7

Q ss_pred             ccEEEECCcHHHHHHHHHHHhcCCCcEEEEccC
Q psy14408        434 FDIIIVGASAAGCVLANRLSEVSSLKVLLIEAG  466 (720)
Q Consensus       434 yDVVIIGSGiAGLvAA~~LAea~G~KVLVLEKG  466 (720)
                      .-|||+|+|.+|..||..|.+. |++|+++|..
T Consensus        21 ~~vvv~G~G~vg~gA~~~~~~l-Ga~v~~~d~~   52 (168)
T PF01262_consen   21 AKVVVTGAGRVGQGAAEIAKGL-GAEVVVPDER   52 (168)
T ss_dssp             -EEEEESTSHHHHHHHHHHHHT-T-EEEEEESS
T ss_pred             eEEEEECCCHHHHHHHHHHhHC-CCEEEeccCC
Confidence            5899999999999999999999 9999999975

4.1.1 from EC) and pyridine nucleotide transhydrogenase (1.6.1.1 from EC) have been shown to share regions of similarity []. Alanine dehydrogenase catalyzes the NAD-dependent reversible reductive amination of pyruvate into alanine. Pyridine nucleotide transhydrogenase catalyzes the reduction of NADP+ to NADPH with the concomitant oxidation of NADH to NAD+. This enzyme is located in the plasma membrane of prokaryotes and in the inner membrane of the mitochondria of eukaryotes. The transhydrogenation between NADH and NADP is coupled with the translocation of a proton across the membrane. In prokaryotes the enzyme is composed of two different subunits, an alpha chain (gene pntA) and a beta chain (gene pntB), while in eukaryotes it is a single chain protein. The sequence of alanine dehydrogenase from several bacterial species are related with those of the alpha subunit of bacterial pyridine nucleotide transhydrogenase and of the N-terminal half of the eukaryotic enzyme. The two most conserved regions correspond respectively to the N-terminal extremity of these proteins and to a central glycine-rich region which is part of the NAD(H)-binding site. This is a C-terminal domain of alanine dehydrogenases (1.4.1.1 from EC). This domain is also found in the lysine 2-oxoglutarate reductases. ; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1KOL_A 2EEZ_F 1L7E_C 1PTJ_B 1NM5_A 1HZZ_B 1U2G_B 2FSV_A 2FR8_A 1U2D_A ....

>PF00899 ThiF: ThiF family; InterPro: IPR000594 Ubiquitin-activating enzyme (E1 enzyme) [, ] activates ubiquitin by first adenylating with ATP its C-terminal glycine residue and thereafter linking this residue to the side chain of a cysteine residue in E1, yielding an ubiquitin-E1 thiolester and free AMP

Probab=90.25  E-value=0.39  Score=45.39  Aligned_cols=32  Identities=25%  Similarity=0.530  Sum_probs=29.0

Q ss_pred             ccEEEECCcHHHHHHHHHHHhcCCC-cEEEEccC
Q psy14408        434 FDIIIVGASAAGCVLANRLSEVSSL-KVLLIEAG  466 (720)
Q Consensus       434 yDVVIIGSGiAGLvAA~~LAea~G~-KVLVLEKG  466 (720)
                      .-|+|||+|..|..+|..|++. |. +++|+|..
T Consensus         3 ~~v~iiG~G~vGs~va~~L~~~-Gv~~i~lvD~d   35 (135)
T PF00899_consen    3 KRVLIIGAGGVGSEVAKNLARS-GVGKITLVDDD   35 (135)
T ss_dssp             -EEEEESTSHHHHHHHHHHHHH-TTSEEEEEESS
T ss_pred             CEEEEECcCHHHHHHHHHHHHh-CCCceeecCCc
Confidence            4699999999999999999999 98 69999976

Later the ubiquitin moiety is transferred to a cysteine residue on one of the many forms of ubiquitin- conjugating enzymes (E2). The family of ubiquitin-activating enzymes shares in its catalytic domain significant similarity with a large family of NAD/FAD-binding proteins. This domain is based on the common NAD/FAD-binding fold and finds members of several families, including UBA ubiquitin activating enzymes; the hesA/moeB/thiF family; NADH peroxidases; the LDH family; sarcosin oxidase; phytoene dehydrogenases; alanine dehydrogenases; hydroxyacyl-CoA dehydrogenases and many other NAD/FAD dependent dehydrogenases and oxidases.; GO: 0003824 catalytic activity; PDB: 1ZKM_D 1ZUD_3 1ZFN_D 1R4M_G 2NVU_A 1R4N_C 3DBR_A 3DBH_C 3DBL_G 1YOV_A ....

>PRK13748 putative mercuric reductase; Provisional

Probab=90.13  E-value=0.3  Score=56.63  Aligned_cols=32  Identities=19%  Similarity=0.364  Sum_probs=30.3

Q ss_pred             cEEEECCcHHHHHHHHHHHhcCCCcEEEEccCC
Q psy14408        435 DIIIVGASAAGCVLANRLSEVSSLKVLLIEAGG  467 (720)
Q Consensus       435 DVVIIGSGiAGLvAA~~LAea~G~KVLVLEKG~  467 (720)
                      .|+|||+|..|+-+|..|++. |.+|+||++..
T Consensus       272 ~vvViGgG~ig~E~A~~l~~~-g~~Vtli~~~~  303 (561)
T PRK13748        272 RLAVIGSSVVALELAQAFARL-GSKVTILARST  303 (561)
T ss_pred             eEEEECCCHHHHHHHHHHHHc-CCEEEEEecCc
Confidence            799999999999999999999 99999999864

>PRK12831 putative oxidoreductase; Provisional

Probab=90.01  E-value=0.32  Score=55.57  Aligned_cols=32  Identities=13%  Similarity=0.183  Sum_probs=30.4

Q ss_pred             cEEEECCcHHHHHHHHHHHhcCCCcEEEEccCC
Q psy14408        435 DIIIVGASAAGCVLANRLSEVSSLKVLLIEAGG  467 (720)
Q Consensus       435 DVVIIGSGiAGLvAA~~LAea~G~KVLVLEKG~  467 (720)
                      .|||||+|..|+-+|..|++. |.+|+||++..
T Consensus       283 ~VvVIGgG~va~d~A~~l~r~-Ga~Vtlv~r~~  314 (464)
T PRK12831        283 KVAVVGGGNVAMDAARTALRL-GAEVHIVYRRS  314 (464)
T ss_pred             eEEEECCcHHHHHHHHHHHHc-CCEEEEEeecC
Confidence            899999999999999999999 99999999864

>cd01483 E1_enzyme_family Superfamily of activating enzymes (E1) of the ubiquitin-like proteins

Probab=89.92  E-value=0.43  Score=45.38  Aligned_cols=31  Identities=26%  Similarity=0.470  Sum_probs=28.6

Q ss_pred             EEEECCcHHHHHHHHHHHhcCCC-cEEEEccCC
Q psy14408        436 IIIVGASAAGCVLANRLSEVSSL-KVLLIEAGG  467 (720)
Q Consensus       436 VVIIGSGiAGLvAA~~LAea~G~-KVLVLEKG~  467 (720)
                      |+|||+|..|..+|..|++. |. +++|+|...
T Consensus         2 VliiG~GglGs~ia~~L~~~-Gv~~i~ivD~d~   33 (143)
T cd01483           2 VLLVGLGGLGSEIALNLARS-GVGKITLIDFDT   33 (143)
T ss_pred             EEEECCCHHHHHHHHHHHHC-CCCEEEEEcCCC
Confidence            89999999999999999999 87 699999763

This family includes classical ubiquitin-activating enzymes E1, ubiquitin-like (ubl) activating enzymes and other mechanistic homologes, like MoeB, Thif1 and others. The common reaction mechanism catalyzed by MoeB, ThiF and the E1 enzymes begins with a nucleophilic attack of the C-terminal carboxylate of MoaD, ThiS and ubiquitin, respectively, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of MoaD and ThiS.

>PRK06719 precorrin-2 dehydrogenase; Validated

Probab=89.88  E-value=0.41  Score=47.12  Aligned_cols=31  Identities=16%  Similarity=0.236  Sum_probs=28.7

Q ss_pred             ccEEEECCcHHHHHHHHHHHhcCCCcEEEEcc
Q psy14408        434 FDIIIVGASAAGCVLANRLSEVSSLKVLLIEA  465 (720)
Q Consensus       434 yDVVIIGSGiAGLvAA~~LAea~G~KVLVLEK  465 (720)
                      -.|||||||-.|.--|..|.+. |++|+||..
T Consensus        14 ~~vlVvGGG~va~rka~~Ll~~-ga~V~VIsp   44 (157)
T PRK06719         14 KVVVIIGGGKIAYRKASGLKDT-GAFVTVVSP   44 (157)
T ss_pred             CEEEEECCCHHHHHHHHHHHhC-CCEEEEEcC
Confidence            4799999999999999999999 999999953

>PRK00094 gpsA NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Validated

Probab=89.82  E-value=0.36  Score=51.64  Aligned_cols=32  Identities=28%  Similarity=0.291  Sum_probs=29.9

Q ss_pred             cEEEECCcHHHHHHHHHHHhcCCCcEEEEccCC
Q psy14408        435 DIIIVGASAAGCVLANRLSEVSSLKVLLIEAGG  467 (720)
Q Consensus       435 DVVIIGSGiAGLvAA~~LAea~G~KVLVLEKG~  467 (720)
                      .|.|||+|..|...|..|+++ |++|.++++..
T Consensus         3 kI~iiG~G~mG~~~a~~L~~~-g~~V~~~~r~~   34 (325)
T PRK00094          3 KIAVLGAGSWGTALAIVLARN-GHDVTLWARDP   34 (325)
T ss_pred             EEEEECCCHHHHHHHHHHHhC-CCEEEEEECCH
Confidence            599999999999999999999 99999999863

>TIGR03026 NDP-sugDHase nucleotide sugar dehydrogenase

Probab=89.80  E-value=0.32  Score=54.66  Aligned_cols=32  Identities=22%  Similarity=0.334  Sum_probs=29.7

Q ss_pred             cEEEECCcHHHHHHHHHHHhcCCCcEEEEccCC
Q psy14408        435 DIIIVGASAAGCVLANRLSEVSSLKVLLIEAGG  467 (720)
Q Consensus       435 DVVIIGSGiAGLvAA~~LAea~G~KVLVLEKG~  467 (720)
                      .|.|||.|..|+..|..|+++ |++|+++|+..
T Consensus         2 kI~vIGlG~~G~~lA~~La~~-G~~V~~~d~~~   33 (411)
T TIGR03026         2 KIAVIGLGYVGLPLAALLADL-GHEVTGVDIDQ   33 (411)
T ss_pred             EEEEECCCchhHHHHHHHHhc-CCeEEEEECCH
Confidence            489999999999999999999 99999999854

All of these enzymes contain three Pfam domains, pfam03721, pfam00984, and pfam03720 for the N-terminal, central, and C-terminal regions respectively.

>TIGR00518 alaDH alanine dehydrogenase

Probab=89.80  E-value=0.36  Score=53.84  Aligned_cols=33  Identities=18%  Similarity=0.283  Sum_probs=30.5

Q ss_pred             cccEEEECCcHHHHHHHHHHHhcCCCcEEEEccC
Q psy14408        433 CFDIIIVGASAAGCVLANRLSEVSSLKVLLIEAG  466 (720)
Q Consensus       433 eyDVVIIGSGiAGLvAA~~LAea~G~KVLVLEKG  466 (720)
                      ..+|+|||+|.+|+.+|..|.+. |.+|+++|+.
T Consensus       167 ~~~VlViGaG~vG~~aa~~a~~l-Ga~V~v~d~~  199 (370)
T TIGR00518       167 PGDVTIIGGGVVGTNAAKMANGL-GATVTILDIN  199 (370)
T ss_pred             CceEEEEcCCHHHHHHHHHHHHC-CCeEEEEECC
Confidence            35799999999999999999999 9999999986

The family of known L-alanine dehydrogenases includes representatives from the Proteobacteria, Firmicutes, and Cyanobacteria, all with about 50 % identity or better. An outlier to this group in both sequence and gap pattern is the homolog from Helicobacter pylori, an epsilon division Proteobacteria, which must be considered a putative alanine dehydrogenase. Related proteins include saccharopine dehydrogenase and the N-terminal half of the NAD(P) transhydrogenase alpha subunit. All of these related proteins bind NAD and/or NADP.

>TIGR01763 MalateDH_bact malate dehydrogenase, NAD-dependent

Probab=89.75  E-value=0.36  Score=52.34  Aligned_cols=32  Identities=31%  Similarity=0.487  Sum_probs=28.9

Q ss_pred             cEEEECCcHHHHHHHHHHHhcCCC-cEEEEccCC
Q psy14408        435 DIIIVGASAAGCVLANRLSEVSSL-KVLLIEAGG  467 (720)
Q Consensus       435 DVVIIGSGiAGLvAA~~LAea~G~-KVLVLEKG~  467 (720)
                      -|.|||+|..|+++|..||.. |+ +|+|+|...
T Consensus         3 KV~VIGaG~vG~~iA~~la~~-g~~~VvlvDi~~   35 (305)
T TIGR01763         3 KISVIGAGFVGATTAFRLAEK-ELADLVLLDVVE   35 (305)
T ss_pred             EEEEECcCHHHHHHHHHHHHc-CCCeEEEEeCCC
Confidence            589999999999999999998 76 899999843

The annotation of Botryococcus braunii as lactate dehydrogenase appears top be in error. This was initially annotated as MDH by Swiss-Prot and then changed. The rationale for either of these annotations is not traceable.

>COG1748 LYS9 Saccharopine dehydrogenase and related proteins [Amino acid transport and metabolism]

Probab=89.68  E-value=0.35  Score=54.39  Aligned_cols=31  Identities=26%  Similarity=0.539  Sum_probs=29.7

Q ss_pred             cEEEECCcHHHHHHHHHHHhcCC-CcEEEEccC
Q psy14408        435 DIIIVGASAAGCVLANRLSEVSS-LKVLLIEAG  466 (720)
Q Consensus       435 DVVIIGSGiAGLvAA~~LAea~G-~KVLVLEKG  466 (720)
                      +|||||+|-.|.++|..||++ | .+|+|.+|.
T Consensus         3 ~ilviGaG~Vg~~va~~la~~-~d~~V~iAdRs   34 (389)
T COG1748           3 KILVIGAGGVGSVVAHKLAQN-GDGEVTIADRS   34 (389)
T ss_pred             cEEEECCchhHHHHHHHHHhC-CCceEEEEeCC
Confidence            799999999999999999999 7 999999996

>PLN02546 glutathione reductase

Probab=89.68  E-value=0.36  Score=56.68  Aligned_cols=34  Identities=18%  Similarity=0.168  Sum_probs=31.7

Q ss_pred             cEEEECCcHHHHHHHHHHHhcCCCcEEEEccCCCC
Q psy14408        435 DIIIVGASAAGCVLANRLSEVSSLKVLLIEAGGDT  469 (720)
Q Consensus       435 DVVIIGSGiAGLvAA~~LAea~G~KVLVLEKG~~~  469 (720)
                      +|+|||+|..|+-+|..|++. |.+|+|+|++...
T Consensus       254 ~V~VIGgG~iGvE~A~~L~~~-g~~Vtlv~~~~~i  287 (558)
T PLN02546        254 KIAIVGGGYIALEFAGIFNGL-KSDVHVFIRQKKV  287 (558)
T ss_pred             eEEEECCCHHHHHHHHHHHhc-CCeEEEEEecccc
Confidence            899999999999999999998 9999999998654

>PRK14989 nitrite reductase subunit NirD; Provisional

Probab=89.60  E-value=0.36  Score=59.45  Aligned_cols=34  Identities=21%  Similarity=0.200  Sum_probs=31.7

Q ss_pred             cEEEECCcHHHHHHHHHHHhcCCCcEEEEccCCCC
Q psy14408        435 DIIIVGASAAGCVLANRLSEVSSLKVLLIEAGGDT  469 (720)
Q Consensus       435 DVVIIGSGiAGLvAA~~LAea~G~KVLVLEKG~~~  469 (720)
                      .+||||||..|+-+|..|++. |.+|+|||+++..
T Consensus       147 ~vvVIGgG~iGlE~A~~L~~~-G~~VtvVe~~~~l  180 (847)
T PRK14989        147 RGAVVGGGLLGLEAAGALKNL-GVETHVIEFAPML  180 (847)
T ss_pred             eEEEECCCHHHHHHHHHHHHc-CCeEEEEeccccc
Confidence            689999999999999999999 9999999998654

>PRK06130 3-hydroxybutyryl-CoA dehydrogenase; Validated

Probab=89.59  E-value=0.4  Score=51.51  Aligned_cols=31  Identities=29%  Similarity=0.505  Sum_probs=29.2

Q ss_pred             cEEEECCcHHHHHHHHHHHhcCCCcEEEEccC
Q psy14408        435 DIIIVGASAAGCVLANRLSEVSSLKVLLIEAG  466 (720)
Q Consensus       435 DVVIIGSGiAGLvAA~~LAea~G~KVLVLEKG  466 (720)
                      .|.|||+|..|...|..|+++ |++|+++|+.
T Consensus         6 ~I~vIGaG~mG~~iA~~l~~~-g~~V~~~d~~   36 (311)
T PRK06130          6 NLAIIGAGTMGSGIAALFARK-GLQVVLIDVM   36 (311)
T ss_pred             EEEEECCCHHHHHHHHHHHhC-CCeEEEEECC
Confidence            589999999999999999999 9999999974

>PRK14694 putative mercuric reductase; Provisional

Probab=89.55  E-value=0.37  Score=54.86  Aligned_cols=32  Identities=19%  Similarity=0.400  Sum_probs=30.2

Q ss_pred             cEEEECCcHHHHHHHHHHHhcCCCcEEEEccCC
Q psy14408        435 DIIIVGASAAGCVLANRLSEVSSLKVLLIEAGG  467 (720)
Q Consensus       435 DVVIIGSGiAGLvAA~~LAea~G~KVLVLEKG~  467 (720)
                      .|+|||+|..|+-+|..|++. |.+|+|++++.
T Consensus       180 ~vvViG~G~~G~E~A~~l~~~-g~~Vtlv~~~~  211 (468)
T PRK14694        180 RLLVIGASVVALELAQAFARL-GSRVTVLARSR  211 (468)
T ss_pred             eEEEECCCHHHHHHHHHHHHc-CCeEEEEECCC
Confidence            899999999999999999999 99999999863

>PRK04148 hypothetical protein; Provisional

Probab=89.47  E-value=0.3  Score=47.23  Aligned_cols=31  Identities=23%  Similarity=0.377  Sum_probs=28.7

Q ss_pred             cEEEECCcHHHHHHHHHHHhcCCCcEEEEccCC
Q psy14408        435 DIIIVGASAAGCVLANRLSEVSSLKVLLIEAGG  467 (720)
Q Consensus       435 DVVIIGSGiAGLvAA~~LAea~G~KVLVLEKG~  467 (720)
                      .|++||.| .|..+|..|++. |++|+.+|...
T Consensus        19 kileIG~G-fG~~vA~~L~~~-G~~ViaIDi~~   49 (134)
T PRK04148         19 KIVELGIG-FYFKVAKKLKES-GFDVIVIDINE   49 (134)
T ss_pred             EEEEEEec-CCHHHHHHHHHC-CCEEEEEECCH
Confidence            69999999 999889999999 99999999874

>PTZ00052 thioredoxin reductase; Provisional

Probab=89.41  E-value=0.37  Score=55.58  Aligned_cols=31  Identities=32%  Similarity=0.367  Sum_probs=29.6

Q ss_pred             cEEEECCcHHHHHHHHHHHhcCCCcEEEEccC
Q psy14408        435 DIIIVGASAAGCVLANRLSEVSSLKVLLIEAG  466 (720)
Q Consensus       435 DVVIIGSGiAGLvAA~~LAea~G~KVLVLEKG  466 (720)
                      .|+|||+|..|+-+|..|++. |.+|+|+++.
T Consensus       184 ~vvIIGgG~iG~E~A~~l~~~-G~~Vtli~~~  214 (499)
T PTZ00052        184 KTLIVGASYIGLETAGFLNEL-GFDVTVAVRS  214 (499)
T ss_pred             eEEEECCCHHHHHHHHHHHHc-CCcEEEEEcC
Confidence            799999999999999999999 9999999975

>PRK14618 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional

Probab=89.39  E-value=0.4  Score=52.01  Aligned_cols=31  Identities=26%  Similarity=0.272  Sum_probs=29.6

Q ss_pred             cEEEECCcHHHHHHHHHHHhcCCCcEEEEccC
Q psy14408        435 DIIIVGASAAGCVLANRLSEVSSLKVLLIEAG  466 (720)
Q Consensus       435 DVVIIGSGiAGLvAA~~LAea~G~KVLVLEKG  466 (720)
                      .|.|||+|..|...|..|+++ |++|+|++|.
T Consensus         6 ~I~iIG~G~mG~~ia~~L~~~-G~~V~~~~r~   36 (328)
T PRK14618          6 RVAVLGAGAWGTALAVLAASK-GVPVRLWARR   36 (328)
T ss_pred             eEEEECcCHHHHHHHHHHHHC-CCeEEEEeCC
Confidence            599999999999999999999 9999999985

>TIGR01438 TGR thioredoxin and glutathione reductase selenoprotein

Probab=89.37  E-value=0.38  Score=55.31  Aligned_cols=31  Identities=26%  Similarity=0.325  Sum_probs=29.5

Q ss_pred             cEEEECCcHHHHHHHHHHHhcCCCcEEEEccC
Q psy14408        435 DIIIVGASAAGCVLANRLSEVSSLKVLLIEAG  466 (720)
Q Consensus       435 DVVIIGSGiAGLvAA~~LAea~G~KVLVLEKG  466 (720)
                      .|||||||..|+-+|..|++. |.+|+|+++.
T Consensus       182 ~vvIIGgG~iG~E~A~~l~~~-G~~Vtli~~~  212 (484)
T TIGR01438       182 KTLVVGASYVALECAGFLAGI-GLDVTVMVRS  212 (484)
T ss_pred             CEEEECCCHHHHHHHHHHHHh-CCcEEEEEec
Confidence            699999999999999999999 9999999985

This homodimeric, FAD-containing member of the pyridine nucleotide disulfide oxidoreductase family contains a C-terminal motif Cys-SeCys-Gly, where SeCys is selenocysteine encoded by TGA (in some sequence reports interpreted as a stop codon). In some members of this subfamily, Cys-SeCys-Gly is replaced by Cys-Cys-Gly. The reach of the selenium atom at the C-term arm of the protein is proposed to allow broad substrate specificity.

>cd01487 E1_ThiF_like E1_ThiF_like

Probab=89.32  E-value=0.48  Score=47.25  Aligned_cols=30  Identities=23%  Similarity=0.330  Sum_probs=28.3

Q ss_pred             EEEECCcHHHHHHHHHHHhcCCCc-EEEEccC
Q psy14408        436 IIIVGASAAGCVLANRLSEVSSLK-VLLIEAG  466 (720)
Q Consensus       436 VVIIGSGiAGLvAA~~LAea~G~K-VLVLEKG  466 (720)
                      |+|||+|..|..+|..|++. |.+ ++|+|..
T Consensus         2 VlViG~GglGs~ia~~La~~-Gvg~i~lvD~D   32 (174)
T cd01487           2 VGIAGAGGLGSNIAVLLARS-GVGNLKLVDFD   32 (174)
T ss_pred             EEEECcCHHHHHHHHHHHHc-CCCeEEEEeCC
Confidence            89999999999999999999 985 9999986

Member of superfamily of activating enzymes (E1) of the ubiquitin-like proteins. The common reaction mechanism catalyzed by E1-like enzymes begins with a nucleophilic attack of the C-terminal carboxylate of the ubiquitin-like substrate, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of the substrate. The exact function of this family is unknown.

>PRK12475 thiamine/molybdopterin biosynthesis MoeB-like protein; Provisional

Probab=89.15  E-value=0.44  Score=52.53  Aligned_cols=37  Identities=24%  Similarity=0.279  Sum_probs=32.3

Q ss_pred             CCCcccEEEECCcHHHHHHHHHHHhcCCC-cEEEEccCC
Q psy14408        430 SGDCFDIIIVGASAAGCVLANRLSEVSSL-KVLLIEAGG  467 (720)
Q Consensus       430 ~d~eyDVVIIGSGiAGLvAA~~LAea~G~-KVLVLEKG~  467 (720)
                      ...+.-|+|||+|-.|..+|..||+. |. +++|+|+..
T Consensus        21 ~L~~~~VlIiG~GglGs~va~~La~a-Gvg~i~lvD~D~   58 (338)
T PRK12475         21 KIREKHVLIVGAGALGAANAEALVRA-GIGKLTIADRDY   58 (338)
T ss_pred             hhcCCcEEEECCCHHHHHHHHHHHHc-CCCEEEEEcCCc
Confidence            33456899999999999999999999 97 799999874

>PRK07688 thiamine/molybdopterin biosynthesis ThiF/MoeB-like protein; Validated

Probab=89.14  E-value=0.48  Score=52.32  Aligned_cols=37  Identities=24%  Similarity=0.299  Sum_probs=32.8

Q ss_pred             CCCcccEEEECCcHHHHHHHHHHHhcCCC-cEEEEccCC
Q psy14408        430 SGDCFDIIIVGASAAGCVLANRLSEVSSL-KVLLIEAGG  467 (720)
Q Consensus       430 ~d~eyDVVIIGSGiAGLvAA~~LAea~G~-KVLVLEKG~  467 (720)
                      ...+..|+|||+|..|..+|..||++ |. +++|+|...
T Consensus        21 ~L~~~~VlVvG~GglGs~va~~La~a-Gvg~i~lvD~D~   58 (339)
T PRK07688         21 KLREKHVLIIGAGALGTANAEMLVRA-GVGKVTIVDRDY   58 (339)
T ss_pred             HhcCCcEEEECCCHHHHHHHHHHHHc-CCCeEEEEeCCc
Confidence            44556899999999999999999999 98 899999863

>PF13241 NAD_binding_7: Putative NAD(P)-binding; PDB: 3DFZ_B 1PJT_A 1PJS_A 1PJQ_A 1KYQ_B

Probab=89.12  E-value=0.3  Score=44.38  Aligned_cols=33  Identities=24%  Similarity=0.281  Sum_probs=30.1

Q ss_pred             cccEEEECCcHHHHHHHHHHHhcCCCcEEEEccC
Q psy14408        433 CFDIIIVGASAAGCVLANRLSEVSSLKVLLIEAG  466 (720)
Q Consensus       433 eyDVVIIGSGiAGLvAA~~LAea~G~KVLVLEKG  466 (720)
                      ...|+|||+|-.|..-|..|.+. |.+|+|+...
T Consensus         7 ~~~vlVvGgG~va~~k~~~Ll~~-gA~v~vis~~   39 (103)
T PF13241_consen    7 GKRVLVVGGGPVAARKARLLLEA-GAKVTVISPE   39 (103)
T ss_dssp             T-EEEEEEESHHHHHHHHHHCCC-TBEEEEEESS
T ss_pred             CCEEEEECCCHHHHHHHHHHHhC-CCEEEEECCc
Confidence            34899999999999999999999 9999999976

>cd01080 NAD_bind_m-THF_DH_Cyclohyd NADP binding domain of methylene-tetrahydrofolate dehydrogenase/cyclohydrolase

Probab=89.09  E-value=0.49  Score=47.25  Aligned_cols=34  Identities=24%  Similarity=0.250  Sum_probs=30.3

Q ss_pred             CcccEEEECCcH-HHHHHHHHHHhcCCCcEEEEccC
Q psy14408        432 DCFDIIIVGASA-AGCVLANRLSEVSSLKVLLIEAG  466 (720)
Q Consensus       432 ~eyDVVIIGSGi-AGLvAA~~LAea~G~KVLVLEKG  466 (720)
                      ....|+|||+|- +|..+|.+|.++ |.+|+|+.|.
T Consensus        43 ~gk~vlViG~G~~~G~~~a~~L~~~-g~~V~v~~r~   77 (168)
T cd01080          43 AGKKVVVVGRSNIVGKPLAALLLNR-NATVTVCHSK   77 (168)
T ss_pred             CCCEEEEECCcHHHHHHHHHHHhhC-CCEEEEEECC
Confidence            346999999996 699999999999 9999999986

NADP binding domain of the Methylene-Tetrahydrofolate Dehydrogenase/cyclohydrolase (m-THF DH/cyclohydrolase) bifunctional enzyme. Tetrahydrofolate is a versatile carrier of activated one-carbon units. The major one-carbon folate donors are N-5 methyltetrahydrofolate, N5,N10-m-THF, and N10-formayltetrahydrofolate. The oxidation of metabolic intermediate m-THF to m-THF requires the enzyme m-THF DH. In addition, most DHs also have an associated cyclohydrolase activity which catalyzes its hydrolysis to N10-formyltetrahydrofolate. m-THF DH is typically found as part of a multifunctional protein in eukaryotes. NADP-dependent m-THF DH in mammals, birds and yeast are components of a trifunctional enzyme with DH, cyclohydrolase, and synthetase activities. Certain eukaryotic cells also contain homodimeric bifunctional DH/cyclodrolase form. In bacteria, monofucntional DH, as well a

>PRK11064 wecC UDP-N-acetyl-D-mannosamine dehydrogenase; Provisional

Probab=89.09  E-value=0.43  Score=53.94  Aligned_cols=33  Identities=15%  Similarity=0.226  Sum_probs=30.2

Q ss_pred             cEEEECCcHHHHHHHHHHHhcCCCcEEEEccCCC
Q psy14408        435 DIIIVGASAAGCVLANRLSEVSSLKVLLIEAGGD  468 (720)
Q Consensus       435 DVVIIGSGiAGLvAA~~LAea~G~KVLVLEKG~~  468 (720)
                      .|.|||.|..|+..|..|+++ |++|+++|+...
T Consensus         5 kI~VIGlG~~G~~~A~~La~~-G~~V~~~D~~~~   37 (415)
T PRK11064          5 TISVIGLGYIGLPTAAAFASR-QKQVIGVDINQH   37 (415)
T ss_pred             EEEEECcchhhHHHHHHHHhC-CCEEEEEeCCHH
Confidence            589999999999999999999 999999997533

>PRK14620 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional

Probab=88.95  E-value=0.44  Score=51.57  Aligned_cols=31  Identities=32%  Similarity=0.367  Sum_probs=29.3

Q ss_pred             cEEEECCcHHHHHHHHHHHhcCCCcEEEEccC
Q psy14408        435 DIIIVGASAAGCVLANRLSEVSSLKVLLIEAG  466 (720)
Q Consensus       435 DVVIIGSGiAGLvAA~~LAea~G~KVLVLEKG  466 (720)
                      .|.|||+|..|.+.|..|+++ |++|.|++|.
T Consensus         2 kI~IiGaGa~G~ala~~L~~~-g~~V~l~~r~   32 (326)
T PRK14620          2 KISILGAGSFGTAIAIALSSK-KISVNLWGRN   32 (326)
T ss_pred             EEEEECcCHHHHHHHHHHHHC-CCeEEEEecC
Confidence            489999999999999999999 9999999985

>PLN02545 3-hydroxybutyryl-CoA dehydrogenase

Probab=88.91  E-value=0.48  Score=50.61  Aligned_cols=32  Identities=22%  Similarity=0.384  Sum_probs=29.7

Q ss_pred             cEEEECCcHHHHHHHHHHHhcCCCcEEEEccCC
Q psy14408        435 DIIIVGASAAGCVLANRLSEVSSLKVLLIEAGG  467 (720)
Q Consensus       435 DVVIIGSGiAGLvAA~~LAea~G~KVLVLEKG~  467 (720)
                      .|.|||+|..|...|..|+++ |++|+++|+..
T Consensus         6 ~V~vIG~G~mG~~iA~~l~~~-G~~V~~~d~~~   37 (295)
T PLN02545          6 KVGVVGAGQMGSGIAQLAAAA-GMDVWLLDSDP   37 (295)
T ss_pred             EEEEECCCHHHHHHHHHHHhc-CCeEEEEeCCH
Confidence            489999999999999999999 99999999763

>PRK15116 sulfur acceptor protein CsdL; Provisional

Probab=88.81  E-value=0.42  Score=51.22  Aligned_cols=38  Identities=21%  Similarity=0.210  Sum_probs=33.0

Q ss_pred             cCCCcccEEEECCcHHHHHHHHHHHhcCC-CcEEEEccCC
Q psy14408        429 KSGDCFDIIIVGASAAGCVLANRLSEVSS-LKVLLIEAGG  467 (720)
Q Consensus       429 ~~d~eyDVVIIGSGiAGLvAA~~LAea~G-~KVLVLEKG~  467 (720)
                      +......|+|||+|-.|..+|..||+. | .+++|+|...
T Consensus        26 ~kL~~s~VlVvG~GGVGs~vae~Lar~-GVg~itLiD~D~   64 (268)
T PRK15116         26 QLFADAHICVVGIGGVGSWAAEALART-GIGAITLIDMDD   64 (268)
T ss_pred             HHhcCCCEEEECcCHHHHHHHHHHHHc-CCCEEEEEeCCE
Confidence            344567999999999999999999999 8 6899999763

>cd05292 LDH_2 A subgroup of L-lactate dehydrogenases

Probab=88.73  E-value=0.49  Score=51.33  Aligned_cols=32  Identities=25%  Similarity=0.345  Sum_probs=29.2

Q ss_pred             cEEEECCcHHHHHHHHHHHhcCC--CcEEEEccCC
Q psy14408        435 DIIIVGASAAGCVLANRLSEVSS--LKVLLIEAGG  467 (720)
Q Consensus       435 DVVIIGSGiAGLvAA~~LAea~G--~KVLVLEKG~  467 (720)
                      .|.|||+|..|+++|+.|++. |  ..|+|+|+..
T Consensus         2 kI~IIGaG~VG~~~a~~l~~~-g~~~ev~l~D~~~   35 (308)
T cd05292           2 KVAIVGAGFVGSTTAYALLLR-GLASEIVLVDINK   35 (308)
T ss_pred             EEEEECCCHHHHHHHHHHHHc-CCCCEEEEEECCc
Confidence            589999999999999999999 8  5899999864

L-lactate dehydrogenases (LDH) are tetrameric enzymes catalyzing the last step of glycolysis in which pyruvate is converted to L-lactate. This subgroup is composed predominantly of bacterial LDHs and a few fungal LDHs. Bacterial LDHs may be non-allosteric or may be activated by an allosteric effector such as fructose-1,6-bisphosphate. LDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.

>PRK02472 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional

Probab=88.70  E-value=0.45  Score=53.57  Aligned_cols=32  Identities=16%  Similarity=0.344  Sum_probs=29.7

Q ss_pred             cEEEECCcHHHHHHHHHHHhcCCCcEEEEccCC
Q psy14408        435 DIIIVGASAAGCVLANRLSEVSSLKVLLIEAGG  467 (720)
Q Consensus       435 DVVIIGSGiAGLvAA~~LAea~G~KVLVLEKG~  467 (720)
                      -|+|+|+|..|+++|..|+++ |++|++.|+..
T Consensus         7 ~v~v~G~g~~G~s~a~~l~~~-G~~V~~~d~~~   38 (447)
T PRK02472          7 KVLVLGLAKSGYAAAKLLHKL-GANVTVNDGKP   38 (447)
T ss_pred             EEEEEeeCHHHHHHHHHHHHC-CCEEEEEcCCC
Confidence            589999999999999999999 99999999754

>PTZ00318 NADH dehydrogenase-like protein; Provisional

Probab=88.55  E-value=0.53  Score=52.97  Aligned_cols=35  Identities=29%  Similarity=0.582  Sum_probs=30.1

Q ss_pred             cEEEECCcHHHHHHHHHHHhc-------------CCCcEEEEccCCCC
Q psy14408        435 DIIIVGASAAGCVLANRLSEV-------------SSLKVLLIEAGGDT  469 (720)
Q Consensus       435 DVVIIGSGiAGLvAA~~LAea-------------~G~KVLVLEKG~~~  469 (720)
                      .|||||+|..|+-+|..|++.             .|.+|+|||+++..
T Consensus       175 ~vvVvGgG~~GvE~A~~l~~~~~~~~~~~~~~~~~~~~Vtlv~~~~~l  222 (424)
T PTZ00318        175 HFVVVGGGPTGVEFAAELADFFRDDVRNLNPELVEECKVTVLEAGSEV  222 (424)
T ss_pred             EEEEECCCHHHHHHHHHHHHHHHHHHHhhhhcccccCEEEEEcCCCcc
Confidence            799999999999999999861             27899999998654

>cd01075 NAD_bind_Leu_Phe_Val_DH NAD(P) binding domain of leucine dehydrogenase, phenylalanine dehydrogenase, and valine dehydrogenase

Probab=88.43  E-value=0.59  Score=47.67  Aligned_cols=31  Identities=23%  Similarity=0.384  Sum_probs=29.5

Q ss_pred             cEEEECCcHHHHHHHHHHHhcCCCcEEEEccC
Q psy14408        435 DIIIVGASAAGCVLANRLSEVSSLKVLLIEAG  466 (720)
Q Consensus       435 DVVIIGSGiAGLvAA~~LAea~G~KVLVLEKG  466 (720)
                      -|+|+|.|-.|..+|..|.+. |++|++.|+.
T Consensus        30 ~v~I~G~G~vG~~~A~~L~~~-G~~Vvv~D~~   60 (200)
T cd01075          30 TVAVQGLGKVGYKLAEHLLEE-GAKLIVADIN   60 (200)
T ss_pred             EEEEECCCHHHHHHHHHHHHC-CCEEEEEcCC
Confidence            699999999999999999999 9999999976

Amino acid dehydrogenase (DH) is a widely distributed family of enzymes that catalyzes the oxidative deamination of an amino acid to its keto acid and ammonia with concomitant reduction of NADP+. For example, leucine DH catalyzes the reversible oxidative deamination of L-leucine and several other straight or branched chain amino acids to the corresponding 2-oxoacid derivative. Amino acid DH -like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann fold superfamily inc

>PRK11749 dihydropyrimidine dehydrogenase subunit A; Provisional

Probab=87.82  E-value=0.58  Score=53.13  Aligned_cols=32  Identities=13%  Similarity=0.299  Sum_probs=29.8

Q ss_pred             cEEEECCcHHHHHHHHHHHhcCCC-cEEEEccCC
Q psy14408        435 DIIIVGASAAGCVLANRLSEVSSL-KVLLIEAGG  467 (720)
Q Consensus       435 DVVIIGSGiAGLvAA~~LAea~G~-KVLVLEKG~  467 (720)
                      .|||||+|..|+-+|..|++. |. +|+|+++..
T Consensus       275 ~VvViGgG~~g~e~A~~l~~~-G~~~Vtlv~~~~  307 (457)
T PRK11749        275 RVVVIGGGNTAMDAARTAKRL-GAESVTIVYRRG  307 (457)
T ss_pred             eEEEECCCHHHHHHHHHHHHc-CCCeEEEeeecC
Confidence            899999999999999999998 88 899999864

>TIGR02279 PaaC-3OHAcCoADH 3-hydroxyacyl-CoA dehydrogenase PaaC

Probab=87.68  E-value=0.59  Score=54.31  Aligned_cols=32  Identities=25%  Similarity=0.414  Sum_probs=29.8

Q ss_pred             cEEEECCcHHHHHHHHHHHhcCCCcEEEEccCC
Q psy14408        435 DIIIVGASAAGCVLANRLSEVSSLKVLLIEAGG  467 (720)
Q Consensus       435 DVVIIGSGiAGLvAA~~LAea~G~KVLVLEKG~  467 (720)
                      -|.|||+|..|...|..|+++ |++|+|+|+..
T Consensus         7 kV~VIGaG~MG~gIA~~la~a-G~~V~l~d~~~   38 (503)
T TIGR02279         7 TVAVIGAGAMGAGIAQVAASA-GHQVLLYDIRA   38 (503)
T ss_pred             EEEEECcCHHHHHHHHHHHhC-CCeEEEEeCCH
Confidence            499999999999999999999 99999999753

This 3-hydroxyacyl-CoA dehydrogenase is involved in the degradation of phenylacetic acid, presumably in steps following the opening of the phenyl ring. The sequences included in this model are all found in aparrent operons with other related genes such as paaA, paaB, paaD, paaE, paaF and paaN. Some genomes contain these other genes without an apparent paaC in the same operon - possibly in these cases a different dehydrogenase involved in fatty acid degradation may fill in the needed activity. This enzyme has domains which are members of the pfam02737 and pfam00725 families.

>TIGR02356 adenyl_thiF thiazole biosynthesis adenylyltransferase ThiF, E

Probab=87.62  E-value=0.67  Score=47.25  Aligned_cols=36  Identities=17%  Similarity=0.281  Sum_probs=32.0

Q ss_pred             CCCcccEEEECCcHHHHHHHHHHHhcCCC-cEEEEccC
Q psy14408        430 SGDCFDIIIVGASAAGCVLANRLSEVSSL-KVLLIEAG  466 (720)
Q Consensus       430 ~d~eyDVVIIGSGiAGLvAA~~LAea~G~-KVLVLEKG  466 (720)
                      ...+.-|+|||.|-.|..+|..|++. |. +++|+|..
T Consensus        18 kl~~~~VlviG~GglGs~ia~~La~~-Gv~~i~lvD~d   54 (202)
T TIGR02356        18 RLLNSHVLIIGAGGLGSPAALYLAGA-GVGTIVIVDDD   54 (202)
T ss_pred             HhcCCCEEEECCCHHHHHHHHHHHHc-CCCeEEEecCC
Confidence            34556899999999999999999999 97 79999986

coli subfamily. Members of the HesA/MoeB/ThiF family of proteins (pfam00899) include a number of members encoded in the midst of thiamine biosynthetic operons. This mix of known and putative ThiF proteins shows a deep split in phylogenetic trees, with the Escherichia. coli ThiF and the E. coli MoeB proteins seemingly more closely related than E. coli ThiF and Campylobacter (for example) ThiF. This model represents the more widely distributed clade of ThiF proteins such found in E. coli.

>PRK14619 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional

Probab=87.61  E-value=0.7  Score=49.84  Aligned_cols=32  Identities=31%  Similarity=0.301  Sum_probs=30.2

Q ss_pred             cEEEECCcHHHHHHHHHHHhcCCCcEEEEccCC
Q psy14408        435 DIIIVGASAAGCVLANRLSEVSSLKVLLIEAGG  467 (720)
Q Consensus       435 DVVIIGSGiAGLvAA~~LAea~G~KVLVLEKG~  467 (720)
                      .|.|||+|..|...|..|+++ |++|.|.+|..
T Consensus         6 ~I~iiG~G~~G~~lA~~l~~~-G~~V~~~~r~~   37 (308)
T PRK14619          6 TIAILGAGAWGSTLAGLASAN-GHRVRVWSRRS   37 (308)
T ss_pred             EEEEECccHHHHHHHHHHHHC-CCEEEEEeCCC
Confidence            599999999999999999999 99999999864

>PRK07417 arogenate dehydrogenase; Reviewed

Probab=87.47  E-value=0.6  Score=49.65  Aligned_cols=31  Identities=26%  Similarity=0.229  Sum_probs=29.2

Q ss_pred             cEEEECCcHHHHHHHHHHHhcCCCcEEEEccC
Q psy14408        435 DIIIVGASAAGCVLANRLSEVSSLKVLLIEAG  466 (720)
Q Consensus       435 DVVIIGSGiAGLvAA~~LAea~G~KVLVLEKG  466 (720)
                      .|.|||.|..|.+.|..|+++ |++|+++++.
T Consensus         2 ~I~IIG~G~mG~sla~~L~~~-g~~V~~~d~~   32 (279)
T PRK07417          2 KIGIVGLGLIGGSLGLDLRSL-GHTVYGVSRR   32 (279)
T ss_pred             eEEEEeecHHHHHHHHHHHHC-CCEEEEEECC
Confidence            488999999999999999999 9999999986

>COG1252 Ndh NADH dehydrogenase, FAD-containing subunit [Energy production and conversion]

Probab=87.38  E-value=0.42  Score=54.03  Aligned_cols=37  Identities=41%  Similarity=0.633  Sum_probs=30.7

Q ss_pred             cccEEEECCcHHHHHHHHHHHhcC------------CCcEEEEccCCCC
Q psy14408        433 CFDIIIVGASAAGCVLANRLSEVS------------SLKVLLIEAGGDT  469 (720)
Q Consensus       433 eyDVVIIGSGiAGLvAA~~LAea~------------G~KVLVLEKG~~~  469 (720)
                      ..+|+|||||.+|.-.|-.|++.-            ..+|+|||+++..
T Consensus       155 ~lti~IvGgG~TGVElAgeL~~~~~~l~~~~~~~~~~~~V~LVea~p~I  203 (405)
T COG1252         155 LLTIVIVGGGPTGVELAGELAERLHRLLKKFRVDPSELRVILVEAGPRI  203 (405)
T ss_pred             eeEEEEECCChhHHHHHHHHHHHHHHHhhhhcCCccccEEEEEccCchh
Confidence            358999999999999999998641            1399999999765

>PRK12548 shikimate 5-dehydrogenase; Provisional

Probab=87.00  E-value=0.75  Score=49.44  Aligned_cols=31  Identities=13%  Similarity=0.261  Sum_probs=28.8

Q ss_pred             cEEEECCcHHHHHHHHHHHhcCCCc-EEEEccC
Q psy14408        435 DIIIVGASAAGCVLANRLSEVSSLK-VLLIEAG  466 (720)
Q Consensus       435 DVVIIGSGiAGLvAA~~LAea~G~K-VLVLEKG  466 (720)
                      -|+|+|||-+|.++|..|++. |.+ |+|+.|.
T Consensus       128 ~vlI~GAGGagrAia~~La~~-G~~~V~I~~R~  159 (289)
T PRK12548        128 KLTVIGAGGAATAIQVQCALD-GAKEITIFNIK  159 (289)
T ss_pred             EEEEECCcHHHHHHHHHHHHC-CCCEEEEEeCC
Confidence            689999999999999999999 987 9999986

>PRK12549 shikimate 5-dehydrogenase; Reviewed

Probab=86.98  E-value=0.73  Score=49.54  Aligned_cols=32  Identities=19%  Similarity=0.438  Sum_probs=29.5

Q ss_pred             ccEEEECCcHHHHHHHHHHHhcCCC-cEEEEccC
Q psy14408        434 FDIIIVGASAAGCVLANRLSEVSSL-KVLLIEAG  466 (720)
Q Consensus       434 yDVVIIGSGiAGLvAA~~LAea~G~-KVLVLEKG  466 (720)
                      -.|+|||+|-+|.++|..|++. |. +|+|++|.
T Consensus       128 k~vlIlGaGGaaraia~aL~~~-G~~~I~I~nR~  160 (284)
T PRK12549        128 ERVVQLGAGGAGAAVAHALLTL-GVERLTIFDVD  160 (284)
T ss_pred             CEEEEECCcHHHHHHHHHHHHc-CCCEEEEECCC
Confidence            3799999999999999999999 87 79999986

>cd05311 NAD_bind_2_malic_enz NAD(P) binding domain of malic enzyme (ME), subgroup 2

Probab=86.84  E-value=0.75  Score=47.85  Aligned_cols=33  Identities=33%  Similarity=0.567  Sum_probs=30.0

Q ss_pred             ccEEEECCcHHHHHHHHHHHhcCCCc---EEEEccCC
Q psy14408        434 FDIIIVGASAAGCVLANRLSEVSSLK---VLLIEAGG  467 (720)
Q Consensus       434 yDVVIIGSGiAGLvAA~~LAea~G~K---VLVLEKG~  467 (720)
                      -.|+|+|+|-+|..+|..|++. |.+   |.|++|.+
T Consensus        26 ~rvlvlGAGgAg~aiA~~L~~~-G~~~~~i~ivdr~g   61 (226)
T cd05311          26 VKIVINGAGAAGIAIARLLLAA-GAKPENIVVVDSKG   61 (226)
T ss_pred             CEEEEECchHHHHHHHHHHHHc-CcCcceEEEEeCCC
Confidence            4799999999999999999998 975   99999974

Malic enzyme (ME), a member of the amino acid dehydrogenase (DH)-like domain family, catalyzes the oxidative decarboxylation of L-malate to pyruvate in the presence of cations (typically Mg++ or Mn++) with the concomitant reduction of cofactor NAD+ or NADP+. ME has been found in all organisms, and plays important roles in diverse metabolic pathways such as photosynthesis and lipogenesis. This enzyme generally forms homotetramers. The conversion of malate to pyruvate by ME typically involves oxidation of malate to produce oxaloacetate, followed by decarboxylation of oxaloacetate to produce pyruvate and CO2. This subfamily consists primarily of archaeal and bacterial ME. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydroph

>PLN02353 probable UDP-glucose 6-dehydrogenase

Probab=86.74  E-value=0.7  Score=53.30  Aligned_cols=32  Identities=16%  Similarity=0.292  Sum_probs=28.1

Q ss_pred             cEEEECCcHHHHHHHHHHHhc-CCCcEEEEccC
Q psy14408        435 DIIIVGASAAGCVLANRLSEV-SSLKVLLIEAG  466 (720)
Q Consensus       435 DVVIIGSGiAGLvAA~~LAea-~G~KVLVLEKG  466 (720)
                      .|.|||+|..|+.+|..||++ +|++|+.+|..
T Consensus         3 ~I~ViG~GyvGl~~A~~lA~~g~g~~V~gvD~~   35 (473)
T PLN02353          3 KICCIGAGYVGGPTMAVIALKCPDIEVVVVDIS   35 (473)
T ss_pred             EEEEECCCHHHHHHHHHHHhcCCCCeEEEEECC
Confidence            589999999999999999987 24789999964

>cd01339 LDH-like_MDH L-lactate dehydrogenase-like malate dehydrogenase proteins

Probab=86.70  E-value=0.68  Score=49.83  Aligned_cols=32  Identities=34%  Similarity=0.477  Sum_probs=28.7

Q ss_pred             EEEECCcHHHHHHHHHHHhcCCC-cEEEEccCCC
Q psy14408        436 IIIVGASAAGCVLANRLSEVSSL-KVLLIEAGGD  468 (720)
Q Consensus       436 VVIIGSGiAGLvAA~~LAea~G~-KVLVLEKG~~  468 (720)
                      |.|||+|..|..+|..|+.. |+ +|+|+|....
T Consensus         1 I~IIGaG~vG~~ia~~la~~-~l~eV~L~Di~e~   33 (300)
T cd01339           1 ISIIGAGNVGATLAQLLALK-ELGDVVLLDIVEG   33 (300)
T ss_pred             CEEECCCHHHHHHHHHHHhC-CCcEEEEEeCCCc
Confidence            57999999999999999988 77 9999998743

Members of this subfamily have an LDH-like structure and an MDH enzymatic activity. Some members, like MJ0490 from Methanococcus jannaschii, exhibit both MDH and LDH activities. Tetrameric MDHs, including those from phototrophic bacteria, are more similar to LDHs than to other MDHs. LDH catalyzes the last step of glycolysis in which pyruvate is converted to L-lactate. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. The LDH-like MDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenas

>PRK11730 fadB multifunctional fatty acid oxidation complex subunit alpha; Reviewed

Probab=86.69  E-value=0.67  Score=56.07  Aligned_cols=32  Identities=16%  Similarity=0.273  Sum_probs=30.0

Q ss_pred             cEEEECCcHHHHHHHHHHHhcCCCcEEEEccCC
Q psy14408        435 DIIIVGASAAGCVLANRLSEVSSLKVLLIEAGG  467 (720)
Q Consensus       435 DVVIIGSGiAGLvAA~~LAea~G~KVLVLEKG~  467 (720)
                      -|.|||+|..|...|..+|.+ |++|+|+|...
T Consensus       315 ~v~ViGaG~mG~gIA~~~a~~-G~~V~l~d~~~  346 (715)
T PRK11730        315 QAAVLGAGIMGGGIAYQSASK-GVPVIMKDINQ  346 (715)
T ss_pred             eEEEECCchhHHHHHHHHHhC-CCeEEEEeCCH
Confidence            599999999999999999999 99999999863

>PRK08644 thiamine biosynthesis protein ThiF; Provisional

Probab=86.51  E-value=0.88  Score=46.87  Aligned_cols=36  Identities=19%  Similarity=0.213  Sum_probs=31.8

Q ss_pred             CCCcccEEEECCcHHHHHHHHHHHhcCCCc-EEEEccC
Q psy14408        430 SGDCFDIIIVGASAAGCVLANRLSEVSSLK-VLLIEAG  466 (720)
Q Consensus       430 ~d~eyDVVIIGSGiAGLvAA~~LAea~G~K-VLVLEKG  466 (720)
                      ......|+|||+|..|..+|..|++. |.. ++|+|..
T Consensus        25 ~L~~~~V~ViG~GglGs~ia~~La~~-Gvg~i~lvD~D   61 (212)
T PRK08644         25 KLKKAKVGIAGAGGLGSNIAVALARS-GVGNLKLVDFD   61 (212)
T ss_pred             HHhCCCEEEECcCHHHHHHHHHHHHc-CCCeEEEEeCC
Confidence            34556899999999999999999999 875 9999986

>cd05291 HicDH_like L-2-hydroxyisocapronate dehydrogenases and some bacterial L-lactate dehydrogenases

Probab=86.47  E-value=0.83  Score=49.39  Aligned_cols=33  Identities=24%  Similarity=0.474  Sum_probs=29.3

Q ss_pred             cEEEECCcHHHHHHHHHHHhcCC--CcEEEEccCCC
Q psy14408        435 DIIIVGASAAGCVLANRLSEVSS--LKVLLIEAGGD  468 (720)
Q Consensus       435 DVVIIGSGiAGLvAA~~LAea~G--~KVLVLEKG~~  468 (720)
                      -|+|||+|..|.++|+.|++. |  .+|+|+|+...
T Consensus         2 kI~IIGaG~vG~~~a~~l~~~-g~~~ei~l~D~~~~   36 (306)
T cd05291           2 KVVIIGAGHVGSSFAYSLVNQ-GIADELVLIDINEE   36 (306)
T ss_pred             EEEEECCCHHHHHHHHHHHhc-CCCCEEEEEeCCcc
Confidence            489999999999999999998 8  47999998643

L-2-hydroxyisocapronate dehydrogenase (HicDH) catalyzes the conversion of a variety of 2-oxo carboxylic acids with medium-sized aliphatic or aromatic side chains. This subfamily is composed of HicDHs and some bacterial L-lactate dehydrogenases (LDH). LDHs catalyze the last step of glycolysis in which pyruvate is converted to L-lactate. Bacterial LDHs can be non-allosteric or may be activated by an allosteric effector such as fructose-1,6-bisphosphate. Members of this subfamily with known structures such as the HicDH of Lactobacillus confusus, the non-allosteric LDH of Lactobacillus pentosus, and the allosteric LDH of Bacillus stearothermophilus, show that they exist as homotetramers. The HicDH-like subfamily is part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine

>PRK08268 3-hydroxy-acyl-CoA dehydrogenase; Validated

Probab=86.43  E-value=0.76  Score=53.43  Aligned_cols=33  Identities=27%  Similarity=0.435  Sum_probs=30.0

Q ss_pred             cEEEECCcHHHHHHHHHHHhcCCCcEEEEccCCC
Q psy14408        435 DIIIVGASAAGCVLANRLSEVSSLKVLLIEAGGD  468 (720)
Q Consensus       435 DVVIIGSGiAGLvAA~~LAea~G~KVLVLEKG~~  468 (720)
                      -|.|||+|..|...|..|+++ |+.|+|+|+...
T Consensus         9 ~V~VIGaG~MG~gIA~~la~a-G~~V~l~D~~~e   41 (507)
T PRK08268          9 TVAVIGAGAMGAGIAQVAAQA-GHTVLLYDARAG   41 (507)
T ss_pred             EEEEECCCHHHHHHHHHHHhC-CCeEEEEeCCHH
Confidence            489999999999999999999 999999997543

>PRK07531 bifunctional 3-hydroxyacyl-CoA dehydrogenase/thioesterase; Validated

Probab=86.43  E-value=0.74  Score=53.21  Aligned_cols=31  Identities=16%  Similarity=0.245  Sum_probs=29.3

Q ss_pred             cEEEECCcHHHHHHHHHHHhcCCCcEEEEccC
Q psy14408        435 DIIIVGASAAGCVLANRLSEVSSLKVLLIEAG  466 (720)
Q Consensus       435 DVVIIGSGiAGLvAA~~LAea~G~KVLVLEKG  466 (720)
                      .|.|||+|..|...|..|+++ |++|+|.|+.
T Consensus         6 kIavIG~G~MG~~iA~~la~~-G~~V~v~D~~   36 (495)
T PRK07531          6 KAACIGGGVIGGGWAARFLLA-GIDVAVFDPH   36 (495)
T ss_pred             EEEEECcCHHHHHHHHHHHhC-CCeEEEEeCC
Confidence            489999999999999999999 9999999975

>PRK12778 putative bifunctional 2-polyprenylphenol hydroxylase/glutamate synthase subunit beta; Provisional

Probab=86.30  E-value=0.75  Score=55.75  Aligned_cols=32  Identities=13%  Similarity=0.208  Sum_probs=29.9

Q ss_pred             cEEEECCcHHHHHHHHHHHhcCCCc-EEEEccCC
Q psy14408        435 DIIIVGASAAGCVLANRLSEVSSLK-VLLIEAGG  467 (720)
Q Consensus       435 DVVIIGSGiAGLvAA~~LAea~G~K-VLVLEKG~  467 (720)
                      .|||||||..|+-+|..|.+. |.+ |+|+++..
T Consensus       572 ~VvVIGgG~~a~d~A~~~~r~-Ga~~Vtlv~r~~  604 (752)
T PRK12778        572 KVAVVGGGNTAMDSARTAKRL-GAERVTIVYRRS  604 (752)
T ss_pred             cEEEECCcHHHHHHHHHHHHc-CCCeEEEeeecC
Confidence            799999999999999999999 987 99999874

>COG0686 Ald Alanine dehydrogenase [Amino acid transport and metabolism]

Probab=86.24  E-value=0.55  Score=51.32  Aligned_cols=34  Identities=12%  Similarity=0.205  Sum_probs=31.3

Q ss_pred             CcccEEEECCcHHHHHHHHHHHhcCCCcEEEEccC
Q psy14408        432 DCFDIIIVGASAAGCVLANRLSEVSSLKVLLIEAG  466 (720)
Q Consensus       432 ~eyDVVIIGSGiAGLvAA~~LAea~G~KVLVLEKG  466 (720)
                      ..-+|+|||+|.+|.-+|+-+..- |.+|++||.+
T Consensus       167 ~~~kv~iiGGGvvgtnaAkiA~gl-gA~Vtild~n  200 (371)
T COG0686         167 LPAKVVVLGGGVVGTNAAKIAIGL-GADVTILDLN  200 (371)
T ss_pred             CCccEEEECCccccchHHHHHhcc-CCeeEEEecC
Confidence            345999999999999999999998 9999999987

>PRK08017 oxidoreductase; Provisional

Probab=86.14  E-value=0.9  Score=46.31  Aligned_cols=31  Identities=26%  Similarity=0.297  Sum_probs=28.8

Q ss_pred             cEEEECC-cHHHHHHHHHHHhcCCCcEEEEccC
Q psy14408        435 DIIIVGA-SAAGCVLANRLSEVSSLKVLLIEAG  466 (720)
Q Consensus       435 DVVIIGS-GiAGLvAA~~LAea~G~KVLVLEKG  466 (720)
                      -|+|+|+ |..|..+|..|+++ |++|+++.|.
T Consensus         4 ~vlVtGasg~IG~~la~~l~~~-g~~v~~~~r~   35 (256)
T PRK08017          4 SVLITGCSSGIGLEAALELKRR-GYRVLAACRK   35 (256)
T ss_pred             EEEEECCCChHHHHHHHHHHHC-CCEEEEEeCC
Confidence            4999998 99999999999999 9999999886

>TIGR02437 FadB fatty oxidation complex, alpha subunit FadB

Probab=86.11  E-value=0.75  Score=55.64  Aligned_cols=32  Identities=13%  Similarity=0.227  Sum_probs=29.9

Q ss_pred             cEEEECCcHHHHHHHHHHHhcCCCcEEEEccCC
Q psy14408        435 DIIIVGASAAGCVLANRLSEVSSLKVLLIEAGG  467 (720)
Q Consensus       435 DVVIIGSGiAGLvAA~~LAea~G~KVLVLEKG~  467 (720)
                      -|.|||+|..|...|..+|.+ |+.|+|+|...
T Consensus       315 ~v~ViGaG~mG~gIA~~~a~~-G~~V~l~d~~~  346 (714)
T TIGR02437       315 QAAVLGAGIMGGGIAYQSASK-GTPIVMKDINQ  346 (714)
T ss_pred             eEEEECCchHHHHHHHHHHhC-CCeEEEEeCCH
Confidence            599999999999999999999 99999999753

Members represent alpha subunit of multifunctional enzyme complex of the fatty acid degradation cycle. Activities include: enoyl-CoA hydratase (EC 4.2.1.17), dodecenoyl-CoA delta-isomerase activity (EC 5.3.3.8), 3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35), 3-hydroxybutyryl-CoA epimerase (EC 5.1.2.3). A representative is E. coli FadB. This model excludes the FadJ family represented by SP:P77399.

>cd00401 AdoHcyase S-adenosyl-L-homocysteine hydrolase (AdoHycase) catalyzes the hydrolysis of S-adenosyl-L-homocysteine (AdoHyc) to form adenosine (Ado) and homocysteine (Hcy)

Probab=85.99  E-value=0.83  Score=51.86  Aligned_cols=33  Identities=18%  Similarity=0.192  Sum_probs=30.1

Q ss_pred             ccEEEECCcHHHHHHHHHHHhcCCCcEEEEccCC
Q psy14408        434 FDIIIVGASAAGCVLANRLSEVSSLKVLLIEAGG  467 (720)
Q Consensus       434 yDVVIIGSGiAGLvAA~~LAea~G~KVLVLEKG~  467 (720)
                      -.|+|||.|..|+.+|..|... |.+|+|+|+..
T Consensus       203 ktVvViG~G~IG~~va~~ak~~-Ga~ViV~d~d~  235 (413)
T cd00401         203 KVAVVAGYGDVGKGCAQSLRGQ-GARVIVTEVDP  235 (413)
T ss_pred             CEEEEECCCHHHHHHHHHHHHC-CCEEEEEECCh
Confidence            3899999999999999999988 99999999864

The equilibrium lies far on the side of AdoHyc synthesis, but in nature the removal of Ado and Hyc is sufficiently fast, so that the net reaction is in the direction of hydrolysis. Since AdoHyc is a potent inhibitor of S-adenosyl-L-methionine dependent methyltransferases, AdoHycase plays a critical role in the modulation of the activity of various methyltransferases. The enzyme forms homooligomers of 45-50kDa subunits, each binding one molecule of NAD+.

>COG1250 FadB 3-hydroxyacyl-CoA dehydrogenase [Lipid metabolism]

Probab=85.80  E-value=0.78  Score=50.14  Aligned_cols=31  Identities=19%  Similarity=0.380  Sum_probs=29.3

Q ss_pred             cEEEECCcHHHHHHHHHHHhcCCCcEEEEccC
Q psy14408        435 DIIIVGASAAGCVLANRLSEVSSLKVLLIEAG  466 (720)
Q Consensus       435 DVVIIGSGiAGLvAA~~LAea~G~KVLVLEKG  466 (720)
                      -|.|||||..|...|..+|.. |++|++.|..
T Consensus         5 kv~ViGaG~MG~gIA~~~A~~-G~~V~l~D~~   35 (307)
T COG1250           5 KVAVIGAGVMGAGIAAVFALA-GYDVVLKDIS   35 (307)
T ss_pred             EEEEEcccchhHHHHHHHhhc-CCceEEEeCC
Confidence            589999999999999999997 9999999987

>TIGR01915 npdG NADPH-dependent F420 reductase

Probab=85.72  E-value=0.98  Score=46.31  Aligned_cols=32  Identities=25%  Similarity=0.322  Sum_probs=28.9

Q ss_pred             cEEEEC-CcHHHHHHHHHHHhcCCCcEEEEccCC
Q psy14408        435 DIIIVG-ASAAGCVLANRLSEVSSLKVLLIEAGG  467 (720)
Q Consensus       435 DVVIIG-SGiAGLvAA~~LAea~G~KVLVLEKG~  467 (720)
                      .|.||| +|..|.+.|..|+++ |++|+|++|..
T Consensus         2 kI~IIGG~G~mG~ala~~L~~~-G~~V~v~~r~~   34 (219)
T TIGR01915         2 KIAVLGGTGDQGKGLALRLAKA-GNKIIIGSRDL   34 (219)
T ss_pred             EEEEEcCCCHHHHHHHHHHHhC-CCEEEEEEcCH
Confidence            489997 799999999999999 99999998863

This model represents a subset of a parent family described by Pfam model pfam03807. Unlike the parent family, members of this family are found only in species with evidence of coenzyme F420. All members of this family are believed to act as NADPH-dependent F420 reductase.

>TIGR03736 PRTRC_ThiF PRTRC system ThiF family protein

Probab=85.68  E-value=0.96  Score=47.89  Aligned_cols=36  Identities=19%  Similarity=0.378  Sum_probs=30.1

Q ss_pred             CcccEEEECCcHHHHHHHHHHHhcC----------CCcEEEEccCC
Q psy14408        432 DCFDIIIVGASAAGCVLANRLSEVS----------SLKVLLIEAGG  467 (720)
Q Consensus       432 ~eyDVVIIGSGiAGLvAA~~LAea~----------G~KVLVLEKG~  467 (720)
                      ....|+|||+|..|+.+|..||+..          |.+++|+|...
T Consensus        10 ~~~~V~vvG~GGlGs~v~~~Lar~G~a~~~~G~~~g~~i~lvD~D~   55 (244)
T TIGR03736        10 RPVSVVLVGAGGTGSQVIAGLARLHHALKALGHPGGLAVTVYDDDT   55 (244)
T ss_pred             CCCeEEEEcCChHHHHHHHHHHHccccccccCCCCCCEEEEECCCE
Confidence            4569999999999999999999961          23899999753

A novel genetic system characterized by six major proteins, included a ParB homolog and a ThiF homolog, is designated PRTRC, or ParB-Related,ThiF-Related Cassette. This family is the PRTRC system ThiF family protein.

>PRK06223 malate dehydrogenase; Reviewed

Probab=85.63  E-value=0.91  Score=48.78  Aligned_cols=32  Identities=34%  Similarity=0.468  Sum_probs=29.0

Q ss_pred             cEEEECCcHHHHHHHHHHHhcCCC-cEEEEccCC
Q psy14408        435 DIIIVGASAAGCVLANRLSEVSSL-KVLLIEAGG  467 (720)
Q Consensus       435 DVVIIGSGiAGLvAA~~LAea~G~-KVLVLEKG~  467 (720)
                      .|.|||+|..|.++|..|+.. |+ .|+|+|...
T Consensus         4 KI~VIGaG~vG~~ia~~la~~-~~~ev~L~D~~~   36 (307)
T PRK06223          4 KISIIGAGNVGATLAHLLALK-ELGDVVLFDIVE   36 (307)
T ss_pred             EEEEECCCHHHHHHHHHHHhC-CCeEEEEEECCC
Confidence            699999999999999999998 76 999999854

>PRK15057 UDP-glucose 6-dehydrogenase; Provisional

Probab=85.52  E-value=0.88  Score=51.14  Aligned_cols=31  Identities=16%  Similarity=0.154  Sum_probs=27.3

Q ss_pred             cEEEECCcHHHHHHHHHHHhcCCCcEEEEccCC
Q psy14408        435 DIIIVGASAAGCVLANRLSEVSSLKVLLIEAGG  467 (720)
Q Consensus       435 DVVIIGSGiAGLvAA~~LAea~G~KVLVLEKG~  467 (720)
                      .|.|||.|..|+..|..|| . |++|+++|+..
T Consensus         2 kI~VIGlGyvGl~~A~~lA-~-G~~VigvD~d~   32 (388)
T PRK15057          2 KITISGTGYVGLSNGLLIA-Q-NHEVVALDILP   32 (388)
T ss_pred             EEEEECCCHHHHHHHHHHH-h-CCcEEEEECCH
Confidence            3889999999999998777 6 99999999753

>PRK04308 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional

Probab=85.41  E-value=0.99  Score=51.02  Aligned_cols=33  Identities=18%  Similarity=0.261  Sum_probs=30.4

Q ss_pred             cEEEECCcHHHHHHHHHHHhcCCCcEEEEccCCC
Q psy14408        435 DIIIVGASAAGCVLANRLSEVSSLKVLLIEAGGD  468 (720)
Q Consensus       435 DVVIIGSGiAGLvAA~~LAea~G~KVLVLEKG~~  468 (720)
                      -|+|+|.|.+|+++|..|+++ |++|++.|....
T Consensus         7 ~~~v~G~g~~G~~~a~~l~~~-g~~v~~~d~~~~   39 (445)
T PRK04308          7 KILVAGLGGTGISMIAYLRKN-GAEVAAYDAELK   39 (445)
T ss_pred             EEEEECCCHHHHHHHHHHHHC-CCEEEEEeCCCC
Confidence            699999999999999999999 999999997654

>cd01078 NAD_bind_H4MPT_DH NADP binding domain of methylene tetrahydromethanopterin dehydrogenase

Probab=84.76  E-value=1.2  Score=44.52  Aligned_cols=32  Identities=19%  Similarity=0.286  Sum_probs=29.3

Q ss_pred             ccEEEECC-cHHHHHHHHHHHhcCCCcEEEEccC
Q psy14408        434 FDIIIVGA-SAAGCVLANRLSEVSSLKVLLIEAG  466 (720)
Q Consensus       434 yDVVIIGS-GiAGLvAA~~LAea~G~KVLVLEKG  466 (720)
                      -.|+|+|+ |..|..+|..|++. |.+|+++.|.
T Consensus        29 ~~vlVlGgtG~iG~~~a~~l~~~-g~~V~l~~R~   61 (194)
T cd01078          29 KTAVVLGGTGPVGQRAAVLLARE-GARVVLVGRD   61 (194)
T ss_pred             CEEEEECCCCHHHHHHHHHHHHC-CCEEEEEcCC
Confidence            47999997 99999999999998 9999999876

Methylene Tetrahydromethanopterin Dehydrogenase (H4MPT DH) NADP binding domain. NADP-dependent H4MPT DH catalyzes the dehydrogenation of methylene- H4MPT and methylene-tetrahydrofolate (H4F) with NADP+ as cofactor. H4F and H4MPT are both cofactors that carry the one-carbon units between the formyl and methyl oxidation level. H4F and H4MPT are structurally analogous to each other with respect to the pterin moiety, but each has distinct side chain. H4MPT is present only in anaerobic methanogenic archaea and aerobic methylotrophic proteobacteria. H4MPT seems to have evolved independently from H4F and functions as a distinct carrier in C1 metabolism. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclo

>TIGR01505 tartro_sem_red 2-hydroxy-3-oxopropionate reductase

Probab=84.66  E-value=1  Score=47.89  Aligned_cols=31  Identities=13%  Similarity=0.290  Sum_probs=29.1

Q ss_pred             EEEECCcHHHHHHHHHHHhcCCCcEEEEccCC
Q psy14408        436 IIIVGASAAGCVLANRLSEVSSLKVLLIEAGG  467 (720)
Q Consensus       436 VVIIGSGiAGLvAA~~LAea~G~KVLVLEKG~  467 (720)
                      |-|||.|..|...|..|++. |++|++.++..
T Consensus         2 IgvIG~G~mG~~iA~~l~~~-G~~V~~~dr~~   32 (291)
T TIGR01505         2 VGFIGLGIMGSPMSINLAKA-GYQLHVTTIGP   32 (291)
T ss_pred             EEEEEecHHHHHHHHHHHHC-CCeEEEEcCCH
Confidence            78999999999999999999 99999999864

This model represents 2-hydroxy-3-oxopropionate reductase (EC 1.1.1.60), also called tartronate semialdehyde reductase. It follows glyoxylate carboligase and precedes glycerate kinase in D-glycerate pathway of glyoxylate degradation. The eventual product, 3-phosphoglycerate, is an intermediate of glycolysis and is readily metabolized. Tartronic semialdehyde, the substrate of this enzyme, may also come from other pathways, such as D-glucarate catabolism.

>PRK05690 molybdopterin biosynthesis protein MoeB; Provisional

Probab=84.51  E-value=1.3  Score=46.74  Aligned_cols=36  Identities=17%  Similarity=0.410  Sum_probs=31.5

Q ss_pred             CCCcccEEEECCcHHHHHHHHHHHhcCCC-cEEEEccC
Q psy14408        430 SGDCFDIIIVGASAAGCVLANRLSEVSSL-KVLLIEAG  466 (720)
Q Consensus       430 ~d~eyDVVIIGSGiAGLvAA~~LAea~G~-KVLVLEKG  466 (720)
                      ...+..|+|||+|..|..+|..||+. |. +++|+|..
T Consensus        29 ~L~~~~VliiG~GglGs~va~~La~~-Gvg~i~lvD~D   65 (245)
T PRK05690         29 KLKAARVLVVGLGGLGCAASQYLAAA-GVGTLTLVDFD   65 (245)
T ss_pred             HhcCCeEEEECCCHHHHHHHHHHHHc-CCCEEEEEcCC
Confidence            33457999999999999999999999 86 78899976

>TIGR02441 fa_ox_alpha_mit fatty acid oxidation complex, alpha subunit, mitochondrial

Probab=84.40  E-value=1  Score=54.71  Aligned_cols=32  Identities=25%  Similarity=0.352  Sum_probs=29.9

Q ss_pred             cEEEECCcHHHHHHHHHHHhcCCCcEEEEccCC
Q psy14408        435 DIIIVGASAAGCVLANRLSEVSSLKVLLIEAGG  467 (720)
Q Consensus       435 DVVIIGSGiAGLvAA~~LAea~G~KVLVLEKG~  467 (720)
                      -|.|||+|..|...|..+|.+ |++|+|+|...
T Consensus       337 ~v~ViGaG~MG~gIA~~~a~~-G~~V~l~d~~~  368 (737)
T TIGR02441       337 TLAVLGAGLMGAGIAQVSVDK-GLKTVLKDATP  368 (737)
T ss_pred             EEEEECCCHhHHHHHHHHHhC-CCcEEEecCCH
Confidence            599999999999999999999 99999999753

Members represent alpha subunit of mitochondrial multifunctional fatty acid degradation enzyme complex. Subunit activities include: enoyl-CoA hydratase (EC 4.2.1.17) & 3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35). Some characterization in human, pig, and rat. The beta subunit has activity: acetyl-CoA C-acyltransferase (EC 2.3.1.16).

>PTZ00082 L-lactate dehydrogenase; Provisional

Probab=84.37  E-value=1.2  Score=48.69  Aligned_cols=33  Identities=24%  Similarity=0.383  Sum_probs=30.0

Q ss_pred             cEEEECCcHHHHHHHHHHHhcCCC-cEEEEccCCC
Q psy14408        435 DIIIVGASAAGCVLANRLSEVSSL-KVLLIEAGGD  468 (720)
Q Consensus       435 DVVIIGSGiAGLvAA~~LAea~G~-KVLVLEKG~~  468 (720)
                      -|+|||+|..|..+|..|+.. |+ +|+|+|....
T Consensus         8 KI~IIGaG~vG~~ia~~la~~-gl~~i~LvDi~~~   41 (321)
T PTZ00082          8 KISLIGSGNIGGVMAYLIVLK-NLGDVVLFDIVKN   41 (321)
T ss_pred             EEEEECCCHHHHHHHHHHHhC-CCCeEEEEeCCCc
Confidence            699999999999999999998 86 8999998654

>PF13478 XdhC_C: XdhC Rossmann domain; PDB: 3ON5_A 2WE8_B 2WE7_A

Probab=84.35  E-value=0.87  Score=43.94  Aligned_cols=31  Identities=19%  Similarity=0.356  Sum_probs=27.0

Q ss_pred             EEEECCcHHHHHHHHHHHhcCCCcEEEEccCC
Q psy14408        436 IIIVGASAAGCVLANRLSEVSSLKVLLIEAGG  467 (720)
Q Consensus       436 VVIIGSGiAGLvAA~~LAea~G~KVLVLEKG~  467 (720)
                      ++|+|+|..|...|..++.- |++|+|+|-..
T Consensus         1 L~I~GaG~va~al~~la~~l-g~~v~v~d~r~   31 (136)
T PF13478_consen    1 LVIFGAGHVARALARLAALL-GFRVTVVDPRP   31 (136)
T ss_dssp             EEEES-STCHHHHHHHHHHC-TEEEEEEES-C
T ss_pred             CEEEeCcHHHHHHHHHHHhC-CCEEEEEcCCc
Confidence            58999999999999999999 99999999763

>TIGR02355 moeB molybdopterin synthase sulfurylase MoeB

Probab=84.28  E-value=1.3  Score=46.52  Aligned_cols=37  Identities=19%  Similarity=0.406  Sum_probs=31.5

Q ss_pred             CCCcccEEEECCcHHHHHHHHHHHhcCCC-cEEEEccCC
Q psy14408        430 SGDCFDIIIVGASAAGCVLANRLSEVSSL-KVLLIEAGG  467 (720)
Q Consensus       430 ~d~eyDVVIIGSGiAGLvAA~~LAea~G~-KVLVLEKG~  467 (720)
                      ......|+|||+|-.|..+|..|++. |. +++|+|...
T Consensus        21 ~L~~~~VlvvG~GglGs~va~~La~~-Gvg~i~lvD~D~   58 (240)
T TIGR02355        21 ALKASRVLIVGLGGLGCAASQYLAAA-GVGNLTLLDFDT   58 (240)
T ss_pred             HHhCCcEEEECcCHHHHHHHHHHHHc-CCCEEEEEeCCc
Confidence            34456999999999999999999999 85 688888764

This model describes the molybdopterin biosynthesis protein MoeB in E. coli and related species. The enzyme covalently modifies the molybdopterin synthase MoaD by sulfurylation. This enzyme is closely related to ThiF, a thiamine biosynthesis enzyme that modifies ThiS by an analogous adenylation. Both MoeB and ThiF belong to the HesA/MoeB/ThiF family (pfam00899).

>PRK09424 pntA NAD(P) transhydrogenase subunit alpha; Provisional

Probab=84.25  E-value=1.1  Score=52.14  Aligned_cols=34  Identities=15%  Similarity=0.218  Sum_probs=30.1

Q ss_pred             cccEEEECCcHHHHHHHHHHHhcCCCcEEEEccCC
Q psy14408        433 CFDIIIVGASAAGCVLANRLSEVSSLKVLLIEAGG  467 (720)
Q Consensus       433 eyDVVIIGSGiAGLvAA~~LAea~G~KVLVLEKG~  467 (720)
                      .-.|+|||+|.+|+.++..+... |.+|.++|...
T Consensus       165 g~kVlViGaG~iGL~Ai~~Ak~l-GA~V~a~D~~~  198 (509)
T PRK09424        165 PAKVLVIGAGVAGLAAIGAAGSL-GAIVRAFDTRP  198 (509)
T ss_pred             CCEEEEECCcHHHHHHHHHHHHC-CCEEEEEeCCH
Confidence            45899999999999999988888 99999999753

>cd00757 ThiF_MoeB_HesA_family ThiF_MoeB_HesA

Probab=84.19  E-value=1.2  Score=46.04  Aligned_cols=36  Identities=22%  Similarity=0.332  Sum_probs=31.1

Q ss_pred             CCCcccEEEECCcHHHHHHHHHHHhcCCC-cEEEEccC
Q psy14408        430 SGDCFDIIIVGASAAGCVLANRLSEVSSL-KVLLIEAG  466 (720)
Q Consensus       430 ~d~eyDVVIIGSGiAGLvAA~~LAea~G~-KVLVLEKG  466 (720)
                      ...+.-|+|||+|..|..+|..|++. |. +++|+|..
T Consensus        18 ~L~~~~VlivG~GglGs~va~~La~~-Gvg~i~lvD~D   54 (228)
T cd00757          18 KLKNARVLVVGAGGLGSPAAEYLAAA-GVGKLGLVDDD   54 (228)
T ss_pred             HHhCCcEEEECCCHHHHHHHHHHHHc-CCCEEEEEcCC
Confidence            33456899999999999999999999 87 68888876

Family of E1-like enzymes involved in molybdopterin and thiamine biosynthesis family. The common reaction mechanism catalyzed by MoeB and ThiF, like other E1 enzymes, begins with a nucleophilic attack of the C-terminal carboxylate of MoaD and ThiS, respectively, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of MoaD and ThiS. MoeB, as the MPT synthase (MoaE/MoaD complex) sulfurase, is involved in the biosynthesis of the molybdenum cofactor, a derivative of the tricyclic pterin, molybdopterin (MPT). ThiF catalyzes the adenylation of ThiS, as part of the biosynthesis pathway of thiamin pyrophosphate (vitamin B1).

>TIGR00507 aroE shikimate 5-dehydrogenase

Probab=84.03  E-value=1.2  Score=47.09  Aligned_cols=31  Identities=23%  Similarity=0.368  Sum_probs=29.3

Q ss_pred             cEEEECCcHHHHHHHHHHHhcCCCcEEEEccC
Q psy14408        435 DIIIVGASAAGCVLANRLSEVSSLKVLLIEAG  466 (720)
Q Consensus       435 DVVIIGSGiAGLvAA~~LAea~G~KVLVLEKG  466 (720)
                      .|+|||+|-+|.++|..|++. |.+|+|++|.
T Consensus       119 ~vliiGaGg~g~aia~~L~~~-g~~v~v~~R~  149 (270)
T TIGR00507       119 RVLIIGAGGAARAVALPLLKA-DCNVIIANRT  149 (270)
T ss_pred             EEEEEcCcHHHHHHHHHHHHC-CCEEEEEeCC
Confidence            699999999999999999999 9999999886

This model finds proteins from prokaryotes and functionally equivalent domains from larger, multifunctional proteins of fungi and plants. Below the trusted cutoff of 180, but above the noise cutoff of 20, are the putative shikimate dehydrogenases of Thermotoga maritima and Mycobacterium tuberculosis, and uncharacterized paralogs of shikimate dehydrogenase from E. coli and H. influenzae. The related enzyme quinate 5-dehydrogenase scores below the noise cutoff. A neighbor-joining tree, constructed with quinate 5-dehydrogenases as the outgroup, shows the Clamydial homolog as clustering among the shikimate dehydrogenases, although the sequence is unusual in the degree of sequence divergence and the presence of an additional N-terminal domain.

>PRK08328 hypothetical protein; Provisional

Probab=84.02  E-value=1.2  Score=46.30  Aligned_cols=35  Identities=23%  Similarity=0.409  Sum_probs=30.3

Q ss_pred             CcccEEEECCcHHHHHHHHHHHhcCCC-cEEEEccCC
Q psy14408        432 DCFDIIIVGASAAGCVLANRLSEVSSL-KVLLIEAGG  467 (720)
Q Consensus       432 ~eyDVVIIGSGiAGLvAA~~LAea~G~-KVLVLEKG~  467 (720)
                      .+.-|+|||+|-.|..+|..||+. |. +++|+|...
T Consensus        26 ~~~~VlIiG~GGlGs~ia~~La~~-Gvg~i~lvD~D~   61 (231)
T PRK08328         26 KKAKVAVVGVGGLGSPVAYYLAAA-GVGRILLIDEQT   61 (231)
T ss_pred             hCCcEEEECCCHHHHHHHHHHHHc-CCCEEEEEcCCc
Confidence            456899999999999999999999 86 588998763

>PRK09496 trkA potassium transporter peripheral membrane component; Reviewed

Probab=83.92  E-value=1.2  Score=50.10  Aligned_cols=32  Identities=41%  Similarity=0.535  Sum_probs=29.8

Q ss_pred             cEEEECCcHHHHHHHHHHHhcCCCcEEEEccCC
Q psy14408        435 DIIIVGASAAGCVLANRLSEVSSLKVLLIEAGG  467 (720)
Q Consensus       435 DVVIIGSGiAGLvAA~~LAea~G~KVLVLEKG~  467 (720)
                      .|+|||+|..|..+|..|.+. |++|+++|+..
T Consensus         2 ~viIiG~G~ig~~~a~~L~~~-g~~v~vid~~~   33 (453)
T PRK09496          2 KIIIVGAGQVGYTLAENLSGE-NNDVTVIDTDE   33 (453)
T ss_pred             EEEEECCCHHHHHHHHHHHhC-CCcEEEEECCH
Confidence            589999999999999999999 99999999853

>PRK01710 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional

Probab=83.91  E-value=1.2  Score=50.75  Aligned_cols=32  Identities=19%  Similarity=0.282  Sum_probs=30.0

Q ss_pred             cEEEECCcHHHHHHHHHHHhcCCCcEEEEccCC
Q psy14408        435 DIIIVGASAAGCVLANRLSEVSSLKVLLIEAGG  467 (720)
Q Consensus       435 DVVIIGSGiAGLvAA~~LAea~G~KVLVLEKG~  467 (720)
                      .|+|||.|.+|+++|..|++. |++|++.|+..
T Consensus        16 ~i~v~G~G~sG~a~a~~L~~~-G~~V~~~D~~~   47 (458)
T PRK01710         16 KVAVVGIGVSNIPLIKFLVKL-GAKVTAFDKKS   47 (458)
T ss_pred             eEEEEcccHHHHHHHHHHHHC-CCEEEEECCCC
Confidence            699999999999999999999 99999999764

>COG1893 ApbA Ketopantoate reductase [Coenzyme metabolism]

Probab=83.77  E-value=1.2  Score=48.63  Aligned_cols=33  Identities=33%  Similarity=0.530  Sum_probs=29.8

Q ss_pred             cEEEECCcHHHHHHHHHHHhcCCCcEEEEccCCC
Q psy14408        435 DIIIVGASAAGCVLANRLSEVSSLKVLLIEAGGD  468 (720)
Q Consensus       435 DVVIIGSGiAGLvAA~~LAea~G~KVLVLEKG~~  468 (720)
                      -|.|||+|..|+-.|++|+++ |..|+++=|..+
T Consensus         2 kI~IlGaGAvG~l~g~~L~~~-g~~V~~~~R~~~   34 (307)
T COG1893           2 KILILGAGAIGSLLGARLAKA-GHDVTLLVRSRR   34 (307)
T ss_pred             eEEEECCcHHHHHHHHHHHhC-CCeEEEEecHHH
Confidence            479999999999999999999 888999988764

>PRK07326 short chain dehydrogenase; Provisional

Probab=83.74  E-value=1.3  Score=44.59  Aligned_cols=31  Identities=23%  Similarity=0.312  Sum_probs=28.1

Q ss_pred             cEEEECC-cHHHHHHHHHHHhcCCCcEEEEccC
Q psy14408        435 DIIIVGA-SAAGCVLANRLSEVSSLKVLLIEAG  466 (720)
Q Consensus       435 DVVIIGS-GiAGLvAA~~LAea~G~KVLVLEKG  466 (720)
                      -|+|+|| |..|..+|.+|+++ |.+|+++.|.
T Consensus         8 ~ilItGatg~iG~~la~~l~~~-g~~V~~~~r~   39 (237)
T PRK07326          8 VALITGGSKGIGFAIAEALLAE-GYKVAITARD   39 (237)
T ss_pred             EEEEECCCCcHHHHHHHHHHHC-CCEEEEeeCC
Confidence            5889985 99999999999998 9999999886

>KOG2304|consensus

Probab=83.68  E-value=0.96  Score=47.56  Aligned_cols=33  Identities=33%  Similarity=0.515  Sum_probs=30.9

Q ss_pred             cEEEECCcHHHHHHHHHHHhcCCCcEEEEccCCC
Q psy14408        435 DIIIVGASAAGCVLANRLSEVSSLKVLLIEAGGD  468 (720)
Q Consensus       435 DVVIIGSGiAGLvAA~~LAea~G~KVLVLEKG~~  468 (720)
                      .|.|||||..|...|-..|.. |+.|.|+|+...
T Consensus        13 ~V~ivGaG~MGSGIAQv~a~s-g~~V~l~d~~~~   45 (298)
T KOG2304|consen   13 NVAIVGAGQMGSGIAQVAATS-GLNVWLVDANED   45 (298)
T ss_pred             ceEEEcccccchhHHHHHHhc-CCceEEecCCHH
Confidence            799999999999999999999 999999998743

>PRK07774 short chain dehydrogenase; Provisional

Probab=83.63  E-value=1.4  Score=44.84  Aligned_cols=31  Identities=23%  Similarity=0.334  Sum_probs=28.9

Q ss_pred             cEEEECC-cHHHHHHHHHHHhcCCCcEEEEccC
Q psy14408        435 DIIIVGA-SAAGCVLANRLSEVSSLKVLLIEAG  466 (720)
Q Consensus       435 DVVIIGS-GiAGLvAA~~LAea~G~KVLVLEKG  466 (720)
                      -|||+|| |..|..+|.+|+++ |++|++++|.
T Consensus         8 ~vlItGasg~iG~~la~~l~~~-g~~vi~~~r~   39 (250)
T PRK07774          8 VAIVTGAAGGIGQAYAEALARE-GASVVVADIN   39 (250)
T ss_pred             EEEEECCCchHHHHHHHHHHHC-CCEEEEEeCC
Confidence            5999998 99999999999999 9999999986

>PRK07067 sorbitol dehydrogenase; Provisional

Probab=83.60  E-value=1.4  Score=45.29  Aligned_cols=32  Identities=22%  Similarity=0.320  Sum_probs=28.6

Q ss_pred             cEEEECC-cHHHHHHHHHHHhcCCCcEEEEccCC
Q psy14408        435 DIIIVGA-SAAGCVLANRLSEVSSLKVLLIEAGG  467 (720)
Q Consensus       435 DVVIIGS-GiAGLvAA~~LAea~G~KVLVLEKG~  467 (720)
                      -|+|+|| |..|..+|..|+++ |++|+++++..
T Consensus         8 ~vlItGas~~iG~~ia~~l~~~-G~~v~~~~r~~   40 (257)
T PRK07067          8 VALLTGAASGIGEAVAERYLAE-GARVVIADIKP   40 (257)
T ss_pred             EEEEeCCCchHHHHHHHHHHHc-CCEEEEEcCCH
Confidence            5889986 88899999999999 99999998863

>PRK06057 short chain dehydrogenase; Provisional

Probab=83.48  E-value=1.4  Score=45.23  Aligned_cols=32  Identities=25%  Similarity=0.305  Sum_probs=29.1

Q ss_pred             cEEEECC-cHHHHHHHHHHHhcCCCcEEEEccCC
Q psy14408        435 DIIIVGA-SAAGCVLANRLSEVSSLKVLLIEAGG  467 (720)
Q Consensus       435 DVVIIGS-GiAGLvAA~~LAea~G~KVLVLEKG~  467 (720)
                      -|+|+|| |..|..+|.+|+++ |++|++++|..
T Consensus         9 ~vlItGasggIG~~~a~~l~~~-G~~v~~~~r~~   41 (255)
T PRK06057          9 VAVITGGGSGIGLATARRLAAE-GATVVVGDIDP   41 (255)
T ss_pred             EEEEECCCchHHHHHHHHHHHc-CCEEEEEeCCH
Confidence            5899999 89999999999999 99999998863

>PRK08217 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional

Probab=83.15  E-value=1.5  Score=44.31  Aligned_cols=31  Identities=29%  Similarity=0.448  Sum_probs=28.7

Q ss_pred             cEEEECC-cHHHHHHHHHHHhcCCCcEEEEccC
Q psy14408        435 DIIIVGA-SAAGCVLANRLSEVSSLKVLLIEAG  466 (720)
Q Consensus       435 DVVIIGS-GiAGLvAA~~LAea~G~KVLVLEKG  466 (720)
                      -++|+|+ |..|..+|..|+++ |.+|+++++.
T Consensus         7 ~~lItG~~g~iG~~~a~~l~~~-G~~vi~~~r~   38 (253)
T PRK08217          7 VIVITGGAQGLGRAMAEYLAQK-GAKLALIDLN   38 (253)
T ss_pred             EEEEECCCchHHHHHHHHHHHC-CCEEEEEeCC
Confidence            5899998 99999999999999 9999999876

>TIGR02853 spore_dpaA dipicolinic acid synthetase, A subunit

Probab=83.01  E-value=1.4  Score=47.50  Aligned_cols=32  Identities=16%  Similarity=0.376  Sum_probs=30.1

Q ss_pred             ccEEEECCcHHHHHHHHHHHhcCCCcEEEEccC
Q psy14408        434 FDIIIVGASAAGCVLANRLSEVSSLKVLLIEAG  466 (720)
Q Consensus       434 yDVVIIGSGiAGLvAA~~LAea~G~KVLVLEKG  466 (720)
                      -.|+|||.|-.|..+|..|+.. |.+|+|++|.
T Consensus       152 k~v~IiG~G~iG~avA~~L~~~-G~~V~v~~R~  183 (287)
T TIGR02853       152 SNVMVLGFGRTGMTIARTFSAL-GARVFVGARS  183 (287)
T ss_pred             CEEEEEcChHHHHHHHHHHHHC-CCEEEEEeCC
Confidence            4799999999999999999998 9999999986

This predicted Rossman fold-containing protein is the A subunit of dipicolinic acid synthetase as found in most, though not all, endospore-forming low-GC Gram-positive bacteria; it is absent in Clostridium. The B subunit is represented by TIGR02852. This protein is also known as SpoVFA.

>cd01065 NAD_bind_Shikimate_DH NAD(P) binding domain of Shikimate dehydrogenase

Probab=82.92  E-value=1.7  Score=41.28  Aligned_cols=32  Identities=25%  Similarity=0.467  Sum_probs=28.8

Q ss_pred             ccEEEECCcHHHHHHHHHHHhcCC-CcEEEEccC
Q psy14408        434 FDIIIVGASAAGCVLANRLSEVSS-LKVLLIEAG  466 (720)
Q Consensus       434 yDVVIIGSGiAGLvAA~~LAea~G-~KVLVLEKG  466 (720)
                      -.|+|||+|..|...|..|++. | .+|.++++.
T Consensus        20 ~~i~iiG~G~~g~~~a~~l~~~-g~~~v~v~~r~   52 (155)
T cd01065          20 KKVLILGAGGAARAVAYALAEL-GAAKIVIVNRT   52 (155)
T ss_pred             CEEEEECCcHHHHHHHHHHHHC-CCCEEEEEcCC
Confidence            3799999999999999999988 6 789999986

Shikimate dehydrogenase (DH) is an amino acid DH family member. Shikimate pathway links metabolism of carbohydrates to de novo biosynthesis of aromatic amino acids, quinones and folate. It is essential in plants, bacteria, and fungi but absent in mammals, thus making enzymes involved in this pathway ideal targets for broad spectrum antibiotics and herbicides. Shikimate DH catalyzes the reduction of 3-hydroshikimate to shikimate using the cofactor NADH. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann

>PLN02520 bifunctional 3-dehydroquinate dehydratase/shikimate dehydrogenase

Probab=82.91  E-value=1.3  Score=51.75  Aligned_cols=32  Identities=25%  Similarity=0.338  Sum_probs=29.5

Q ss_pred             ccEEEECCcHHHHHHHHHHHhcCCCcEEEEccC
Q psy14408        434 FDIIIVGASAAGCVLANRLSEVSSLKVLLIEAG  466 (720)
Q Consensus       434 yDVVIIGSGiAGLvAA~~LAea~G~KVLVLEKG  466 (720)
                      --|+|+|+|-+|.++|+.|+++ |.+|+|+.|.
T Consensus       380 k~vlIlGaGGagrAia~~L~~~-G~~V~i~nR~  411 (529)
T PLN02520        380 KLFVVIGAGGAGKALAYGAKEK-GARVVIANRT  411 (529)
T ss_pred             CEEEEECCcHHHHHHHHHHHHC-CCEEEEEcCC
Confidence            3699999999999999999999 9999999885

>PF03807 F420_oxidored: NADP oxidoreductase coenzyme F420-dependent; InterPro: IPR004455 The function of F420-dependent NADP reductase is the transfer of electrons from reduced coenzyme F420 into an electron transport chain

Probab=82.89  E-value=1.8  Score=37.94  Aligned_cols=30  Identities=30%  Similarity=0.448  Sum_probs=27.4

Q ss_pred             EEEECCcHHHHHHHHHHHhcCC---CcEEEE-ccC
Q psy14408        436 IIIVGASAAGCVLANRLSEVSS---LKVLLI-EAG  466 (720)
Q Consensus       436 VVIIGSGiAGLvAA~~LAea~G---~KVLVL-EKG  466 (720)
                      +.|||+|-.|.+.|..|.++ |   .+|+++ +|.
T Consensus         2 I~iIG~G~mg~al~~~l~~~-g~~~~~v~~~~~r~   35 (96)
T PF03807_consen    2 IGIIGAGNMGSALARGLLAS-GIKPHEVIIVSSRS   35 (96)
T ss_dssp             EEEESTSHHHHHHHHHHHHT-TS-GGEEEEEEESS
T ss_pred             EEEECCCHHHHHHHHHHHHC-CCCceeEEeeccCc
Confidence            67999999999999999999 9   899966 876

It catalyses the reduction of F420 with NADP(+) and the reduction of NADP(+) with F420H(2).; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2IZZ_B 2GR9_B 2GRA_B 2GER_C 2AMF_E 2AHR_C 2VQ3_B 2VNS_B 2RCY_D 2YJZ_D ....

>cd01485 E1-1_like Ubiquitin activating enzyme (E1), repeat 1-like

Probab=82.85  E-value=1.5  Score=44.58  Aligned_cols=37  Identities=19%  Similarity=0.335  Sum_probs=31.8

Q ss_pred             CCCcccEEEECCcHHHHHHHHHHHhcCCCc-EEEEccCC
Q psy14408        430 SGDCFDIIIVGASAAGCVLANRLSEVSSLK-VLLIEAGG  467 (720)
Q Consensus       430 ~d~eyDVVIIGSGiAGLvAA~~LAea~G~K-VLVLEKG~  467 (720)
                      ...+.-|+|||+|..|..+|..|++. |.+ ++|+|...
T Consensus        16 ~L~~s~VlviG~gglGsevak~L~~~-GVg~i~lvD~d~   53 (198)
T cd01485          16 KLRSAKVLIIGAGALGAEIAKNLVLA-GIDSITIVDHRL   53 (198)
T ss_pred             HHhhCcEEEECCCHHHHHHHHHHHHc-CCCEEEEEECCc
Confidence            33456999999999999999999999 875 88999763

E1, a highly conserved small protein present universally in eukaryotic cells, is part of cascade to attach ubiquitin (Ub) covalently to substrate proteins. This cascade consists of activating (E1), conjugating (E2), and/or ligating (E3) enzymes and then targets them for degradation by the 26S proteasome. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and ubiquitin's C-terminus. The E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. A set of novel molecules with a structural similarity to Ub, called Ub-like proteins (Ubls), have similar conjugation cascades. In contrast to ubiquitin-E1, which is a single-chain protein with a weakly conserved two-fold repeat, many of the Ubls-E1are a heterodimer where each subunit corresponds to one half of a single-chain E1. This CD represents the family homol

>PRK08306 dipicolinate synthase subunit A; Reviewed

Probab=82.77  E-value=1.4  Score=47.56  Aligned_cols=33  Identities=18%  Similarity=0.291  Sum_probs=30.7

Q ss_pred             cccEEEECCcHHHHHHHHHHHhcCCCcEEEEccC
Q psy14408        433 CFDIIIVGASAAGCVLANRLSEVSSLKVLLIEAG  466 (720)
Q Consensus       433 eyDVVIIGSGiAGLvAA~~LAea~G~KVLVLEKG  466 (720)
                      .-.|+|||.|.+|..+|..|.+. |.+|+++++.
T Consensus       152 g~kvlViG~G~iG~~~a~~L~~~-Ga~V~v~~r~  184 (296)
T PRK08306        152 GSNVLVLGFGRTGMTLARTLKAL-GANVTVGARK  184 (296)
T ss_pred             CCEEEEECCcHHHHHHHHHHHHC-CCEEEEEECC
Confidence            35899999999999999999998 9999999987

>PF03446 NAD_binding_2: NAD binding domain of 6-phosphogluconate dehydrogenase; InterPro: IPR006115 6-Phosphogluconate dehydrogenase (1

Probab=82.76  E-value=1.6  Score=42.58  Aligned_cols=31  Identities=19%  Similarity=0.380  Sum_probs=27.5

Q ss_pred             cEEEECCcHHHHHHHHHHHhcCCCcEEEEccC
Q psy14408        435 DIIIVGASAAGCVLANRLSEVSSLKVLLIEAG  466 (720)
Q Consensus       435 DVVIIGSGiAGLvAA~~LAea~G~KVLVLEKG  466 (720)
                      .|-|||-|..|...|.+|+++ |++|.+.|+.
T Consensus         3 ~Ig~IGlG~mG~~~a~~L~~~-g~~v~~~d~~   33 (163)
T PF03446_consen    3 KIGFIGLGNMGSAMARNLAKA-GYEVTVYDRS   33 (163)
T ss_dssp             EEEEE--SHHHHHHHHHHHHT-TTEEEEEESS
T ss_pred             EEEEEchHHHHHHHHHHHHhc-CCeEEeeccc
Confidence            588999999999999999999 9999999986

1.1.44 from EC) (6PGD) is an oxidative carboxylase that catalyses the decarboxylating reduction of 6-phosphogluconate into ribulose 5-phosphate in the presence of NADP. This reaction is a component of the hexose mono-phosphate shunt and pentose phosphate pathways (PPP) [, ]. Prokaryotic and eukaryotic 6PGD are proteins of about 470 amino acids whose sequence are highly conserved []. The protein is a homodimer in which the monomers act independently []: each contains a large, mainly alpha-helical domain and a smaller beta-alpha-beta domain, containing a mixed parallel and anti-parallel 6-stranded beta sheet []. NADP is bound in a cleft in the small domain, the substrate binding in an adjacent pocket []. This family represents the NADP binding domain of 6-phosphogluconate dehydrogenase which adopts a Rossman fold. The C-terminal domain is described in IPR006114 from INTERPRO.; GO: 0004616 phosphogluconate dehydrogenase (decarboxylating) activity, 0006098 pentose-phosphate shunt, 0055114 oxidation-reduction process; PDB: 3AX6_D 3PDU_G 3Q3C_A 3OBB_A 4DLL_B 1PGP_A 1PGN_A 2PGD_A 1PGQ_A 1PGO_A ....

>PRK07523 gluconate 5-dehydrogenase; Provisional

Probab=82.57  E-value=1.6  Score=44.69  Aligned_cols=31  Identities=23%  Similarity=0.413  Sum_probs=28.5

Q ss_pred             cEEEECC-cHHHHHHHHHHHhcCCCcEEEEccC
Q psy14408        435 DIIIVGA-SAAGCVLANRLSEVSSLKVLLIEAG  466 (720)
Q Consensus       435 DVVIIGS-GiAGLvAA~~LAea~G~KVLVLEKG  466 (720)
                      -|+|+|| |..|..+|.+|+++ |++|+++.|.
T Consensus        12 ~vlItGa~g~iG~~ia~~l~~~-G~~V~~~~r~   43 (255)
T PRK07523         12 RALVTGSSQGIGYALAEGLAQA-GAEVILNGRD   43 (255)
T ss_pred             EEEEECCcchHHHHHHHHHHHc-CCEEEEEeCC
Confidence            5999996 89999999999999 9999999886

>cd05191 NAD_bind_amino_acid_DH NAD(P) binding domain of amino acid dehydrogenase-like proteins

Probab=82.53  E-value=2.1  Score=37.48  Aligned_cols=32  Identities=25%  Similarity=0.414  Sum_probs=28.5

Q ss_pred             ccEEEECCcHHHHHHHHHHHhcCCCcEEEEcc
Q psy14408        434 FDIIIVGASAAGCVLANRLSEVSSLKVLLIEA  465 (720)
Q Consensus       434 yDVVIIGSGiAGLvAA~~LAea~G~KVLVLEK  465 (720)
                      -.++|+|+|..|..+|..|.+..+.+|.|++|
T Consensus        24 ~~v~i~G~G~~g~~~a~~l~~~~~~~v~v~~r   55 (86)
T cd05191          24 KTVVVLGAGEVGKGIAKLLADEGGKKVVLCDR   55 (86)
T ss_pred             CEEEEECCCHHHHHHHHHHHHcCCCEEEEEcC
Confidence            37999999999999999999973578999998

Amino acid dehydrogenase(DH)-like NAD(P)-binding domains are members of the Rossmann fold superfamily and are found in glutamate, leucine, and phenylalanine DHs (DHs), methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann fold superfamily includes a wide variety of protein families including NAD(P)- binding domains of alcohol DHs, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate DH, lactate/malate DHs, formate/glycerate DHs, siroheme synthases, 6-phosphogluconate DH, amino acid DHs, repressor rex, NAD-binding potassium channel domain, CoA-binding, and ornithine cyclodeaminase-like domains. These domains have an al

>PRK11154 fadJ multifunctional fatty acid oxidation complex subunit alpha; Reviewed

Probab=82.47  E-value=1.3  Score=53.57  Aligned_cols=31  Identities=16%  Similarity=0.236  Sum_probs=28.9

Q ss_pred             cEEEECCcHHHHHHHHHHH-hcCCCcEEEEccC
Q psy14408        435 DIIIVGASAAGCVLANRLS-EVSSLKVLLIEAG  466 (720)
Q Consensus       435 DVVIIGSGiAGLvAA~~LA-ea~G~KVLVLEKG  466 (720)
                      -|.|||+|..|...|..+| .+ |+.|+|+|..
T Consensus       311 ~v~ViGaG~mG~giA~~~a~~~-G~~V~l~d~~  342 (708)
T PRK11154        311 KVGVLGGGLMGGGIAYVTATKA-GLPVRIKDIN  342 (708)
T ss_pred             EEEEECCchhhHHHHHHHHHHc-CCeEEEEeCC
Confidence            5999999999999999999 77 9999999975

>PRK00258 aroE shikimate 5-dehydrogenase; Reviewed

Probab=82.36  E-value=1.6  Score=46.56  Aligned_cols=32  Identities=19%  Similarity=0.319  Sum_probs=29.6

Q ss_pred             ccEEEECCcHHHHHHHHHHHhcCC-CcEEEEccC
Q psy14408        434 FDIIIVGASAAGCVLANRLSEVSS-LKVLLIEAG  466 (720)
Q Consensus       434 yDVVIIGSGiAGLvAA~~LAea~G-~KVLVLEKG  466 (720)
                      -.|+|||+|-+|.++|..|++. | .+|+|+.|.
T Consensus       124 k~vlVlGaGg~a~ai~~aL~~~-g~~~V~v~~R~  156 (278)
T PRK00258        124 KRILILGAGGAARAVILPLLDL-GVAEITIVNRT  156 (278)
T ss_pred             CEEEEEcCcHHHHHHHHHHHHc-CCCEEEEEeCC
Confidence            3799999999999999999998 9 789999986

>PLN02172 flavin-containing monooxygenase FMO GS-OX

Probab=82.33  E-value=1.1  Score=51.28  Aligned_cols=33  Identities=15%  Similarity=0.405  Sum_probs=30.9

Q ss_pred             cEEEECCcHHHHHHHHHHHhcCCCcEEEEccCCC
Q psy14408        435 DIIIVGASAAGCVLANRLSEVSSLKVLLIEAGGD  468 (720)
Q Consensus       435 DVVIIGSGiAGLvAA~~LAea~G~KVLVLEKG~~  468 (720)
                      .|||||+|..|+=+|..|++. +.+|+|+.|+..
T Consensus       206 ~VvVVG~G~Sg~diA~~L~~~-a~~V~l~~r~~~  238 (461)
T PLN02172        206 VVVVIGNFASGADISRDIAKV-AKEVHIASRASE  238 (461)
T ss_pred             EEEEECCCcCHHHHHHHHHHh-CCeEEEEEeecc
Confidence            899999999999999999998 999999998754

>PRK05993 short chain dehydrogenase; Provisional

Probab=82.30  E-value=1.6  Score=45.66  Aligned_cols=32  Identities=25%  Similarity=0.303  Sum_probs=28.6

Q ss_pred             cEEEECC-cHHHHHHHHHHHhcCCCcEEEEccCC
Q psy14408        435 DIIIVGA-SAAGCVLANRLSEVSSLKVLLIEAGG  467 (720)
Q Consensus       435 DVVIIGS-GiAGLvAA~~LAea~G~KVLVLEKG~  467 (720)
                      =|+|+|| |..|..+|..|+++ |++|+++.|..
T Consensus         6 ~vlItGasggiG~~la~~l~~~-G~~Vi~~~r~~   38 (277)
T PRK05993          6 SILITGCSSGIGAYCARALQSD-GWRVFATCRKE   38 (277)
T ss_pred             EEEEeCCCcHHHHHHHHHHHHC-CCEEEEEECCH
Confidence            3888998 99999999999999 99999998863

>PRK04690 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional

Probab=82.28  E-value=1.4  Score=50.55  Aligned_cols=31  Identities=13%  Similarity=-0.036  Sum_probs=29.4

Q ss_pred             cEEEECCcHHHHHHHHHHHhcCCCcEEEEccC
Q psy14408        435 DIIIVGASAAGCVLANRLSEVSSLKVLLIEAG  466 (720)
Q Consensus       435 DVVIIGSGiAGLvAA~~LAea~G~KVLVLEKG  466 (720)
                      -|+|+|.|..|.++|..|.+. |.+|+|.|..
T Consensus        10 ~v~v~G~G~sG~~~~~~l~~~-g~~v~~~d~~   40 (468)
T PRK04690         10 RVALWGWGREGRAAYRALRAH-LPAQALTLFC   40 (468)
T ss_pred             EEEEEccchhhHHHHHHHHHc-CCEEEEEcCC
Confidence            599999999999999999999 9999999964

>PRK12779 putative bifunctional glutamate synthase subunit beta/2-polyprenylphenol hydroxylase; Provisional

Probab=82.10  E-value=1.3  Score=55.19  Aligned_cols=32  Identities=9%  Similarity=0.203  Sum_probs=30.0

Q ss_pred             cEEEECCcHHHHHHHHHHHhcCCCcEEEEccCC
Q psy14408        435 DIIIVGASAAGCVLANRLSEVSSLKVLLIEAGG  467 (720)
Q Consensus       435 DVVIIGSGiAGLvAA~~LAea~G~KVLVLEKG~  467 (720)
                      .|||||||.+|+-||..+.+. |.+|+|+.+..
T Consensus       449 ~VvVIGGG~tA~D~A~ta~R~-Ga~Vtlv~rr~  480 (944)
T PRK12779        449 EVFVIGGGNTAMDAARTAKRL-GGNVTIVYRRT  480 (944)
T ss_pred             EEEEECCCHHHHHHHHHHHHc-CCEEEEEEecC
Confidence            799999999999999999999 99999998764

>PRK15461 NADH-dependent gamma-hydroxybutyrate dehydrogenase; Provisional

Probab=82.00  E-value=1.6  Score=47.00  Aligned_cols=32  Identities=16%  Similarity=0.308  Sum_probs=29.9

Q ss_pred             cEEEECCcHHHHHHHHHHHhcCCCcEEEEccCC
Q psy14408        435 DIIIVGASAAGCVLANRLSEVSSLKVLLIEAGG  467 (720)
Q Consensus       435 DVVIIGSGiAGLvAA~~LAea~G~KVLVLEKG~  467 (720)
                      .|.|||.|..|...|..|+++ |++|+|.++..
T Consensus         3 ~Ig~IGlG~mG~~mA~~l~~~-G~~V~v~d~~~   34 (296)
T PRK15461          3 AIAFIGLGQMGSPMASNLLKQ-GHQLQVFDVNP   34 (296)
T ss_pred             eEEEEeeCHHHHHHHHHHHHC-CCeEEEEcCCH
Confidence            689999999999999999999 99999999863

>PRK06505 enoyl-(acyl carrier protein) reductase; Provisional

Probab=81.93  E-value=1.6  Score=45.95  Aligned_cols=31  Identities=16%  Similarity=0.272  Sum_probs=27.8

Q ss_pred             cEEEECCc---HHHHHHHHHHHhcCCCcEEEEccC
Q psy14408        435 DIIIVGAS---AAGCVLANRLSEVSSLKVLLIEAG  466 (720)
Q Consensus       435 DVVIIGSG---iAGLvAA~~LAea~G~KVLVLEKG  466 (720)
                      -|||.||+   -.|..+|..|+++ |.+|+++.|.
T Consensus         9 ~~lVTGas~~~GIG~aiA~~la~~-Ga~V~~~~r~   42 (271)
T PRK06505          9 RGLIMGVANDHSIAWGIAKQLAAQ-GAELAFTYQG   42 (271)
T ss_pred             EEEEeCCCCCCcHHHHHHHHHHhC-CCEEEEecCc
Confidence            58999987   6899999999999 9999999775

>cd01490 Ube1_repeat2 Ubiquitin activating enzyme (E1), repeat 2

Probab=81.79  E-value=1.6  Score=50.01  Aligned_cols=32  Identities=22%  Similarity=0.505  Sum_probs=29.1

Q ss_pred             EEEECCcHHHHHHHHHHHhcCCC------cEEEEccCCC
Q psy14408        436 IIIVGASAAGCVLANRLSEVSSL------KVLLIEAGGD  468 (720)
Q Consensus       436 VVIIGSGiAGLvAA~~LAea~G~------KVLVLEKG~~  468 (720)
                      |+|||+|..|+-+|..||.. |.      +++|+|....
T Consensus         2 VlvVGaGGlGcE~lKnLal~-Gv~~g~~G~I~IvD~D~I   39 (435)
T cd01490           2 VFLVGAGAIGCELLKNFALM-GVGTGESGEITVTDMDNI   39 (435)
T ss_pred             EEEECCCHHHHHHHHHHHHc-CCCcCCCCeEEEECCCCc
Confidence            89999999999999999999 98      8999997543

E1, a highly conserved small protein present universally in eukaryotic cells, is part of cascade to attach ubiquitin (Ub) covalently to substrate proteins. This cascade consists of activating (E1), conjugating (E2), and/or ligating (E3) enzymes and then targets them for degradation by the 26S proteasome. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and ubiquitin's C-terminus. E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. Ubiquitin-E1 is a single-chain protein with a weakly conserved two-fold repeat. This CD represents the second repeat of Ub-E1.

>TIGR01832 kduD 2-deoxy-D-gluconate 3-dehydrogenase

Probab=81.78  E-value=1.8  Score=43.97  Aligned_cols=31  Identities=19%  Similarity=0.239  Sum_probs=28.1

Q ss_pred             cEEEECC-cHHHHHHHHHHHhcCCCcEEEEccC
Q psy14408        435 DIIIVGA-SAAGCVLANRLSEVSSLKVLLIEAG  466 (720)
Q Consensus       435 DVVIIGS-GiAGLvAA~~LAea~G~KVLVLEKG  466 (720)
                      -|+|+|+ |..|..+|.+|+++ |++|+++.|.
T Consensus         7 ~vlItGas~gIG~~ia~~l~~~-G~~vi~~~r~   38 (248)
T TIGR01832         7 VALVTGANTGLGQGIAVGLAEA-GADIVGAGRS   38 (248)
T ss_pred             EEEEECCCchHHHHHHHHHHHC-CCEEEEEcCc
Confidence            5899997 78899999999999 9999999875

This model describes 2-deoxy-D-gluconate 3-dehydrogenase (also called 2-keto-3-deoxygluconate oxidoreductase), a member of the family of short-chain-alcohol dehydrogenases (pfam00106). This protein has been characterized in Erwinia chrysanthemi as an enzyme of pectin degradation.

>PRK07231 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional

Probab=81.76  E-value=1.8  Score=43.85  Aligned_cols=32  Identities=25%  Similarity=0.376  Sum_probs=29.0

Q ss_pred             cEEEECC-cHHHHHHHHHHHhcCCCcEEEEccCC
Q psy14408        435 DIIIVGA-SAAGCVLANRLSEVSSLKVLLIEAGG  467 (720)
Q Consensus       435 DVVIIGS-GiAGLvAA~~LAea~G~KVLVLEKG~  467 (720)
                      -|+|+|| |..|..+|.+|+++ |++|+++.|..
T Consensus         7 ~vlItGasg~iG~~l~~~l~~~-G~~V~~~~r~~   39 (251)
T PRK07231          7 VAIVTGASSGIGEGIARRFAAE-GARVVVTDRNE   39 (251)
T ss_pred             EEEEECCCChHHHHHHHHHHHC-CCEEEEEeCCH
Confidence            6899996 89999999999999 99999999874

>TIGR02440 FadJ fatty oxidation complex, alpha subunit FadJ

Probab=81.76  E-value=1.5  Score=52.95  Aligned_cols=32  Identities=16%  Similarity=0.233  Sum_probs=29.1

Q ss_pred             cEEEECCcHHHHHHHHHHH-hcCCCcEEEEccCC
Q psy14408        435 DIIIVGASAAGCVLANRLS-EVSSLKVLLIEAGG  467 (720)
Q Consensus       435 DVVIIGSGiAGLvAA~~LA-ea~G~KVLVLEKG~  467 (720)
                      -|.|||+|..|...|..+| ++ |+.|+|+|...
T Consensus       306 ~v~ViGaG~mG~~iA~~~a~~~-G~~V~l~d~~~  338 (699)
T TIGR02440       306 KVGILGGGLMGGGIASVTATKA-GIPVRIKDINP  338 (699)
T ss_pred             EEEEECCcHHHHHHHHHHHHHc-CCeEEEEeCCH
Confidence            5999999999999999998 57 99999999864

Members represent alpha subunit of multifunctional enzyme complex of the fatty acid degradation cycle. Plays a minor role in aerobic beta-oxidation of fatty acids. FadJI complex is necessary for anaerobic growth on short-chain acids with nitrate as an electron acceptor. Activities include: enoyl-CoA hydratase (EC 4.2.1.17),3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35), 3-hydroxybutyryl-CoA epimerase (EC 5.1.2.3). A representative is E. coli FadJ (aka YfcX). This model excludes the FadB of TIGR02437 equivalog.

>PF13460 NAD_binding_10: NADH(P)-binding ; PDB: 3OH8_A 3E8X_A 3GPI_A 3QVO_A 2Q46_B 1YBM_B 1XQ6_B 2Q4B_B 3EW7_A 3IUS_B

Probab=81.58  E-value=2.1  Score=41.57  Aligned_cols=31  Identities=26%  Similarity=0.328  Sum_probs=28.8

Q ss_pred             EEEECC-cHHHHHHHHHHHhcCCCcEEEEccCC
Q psy14408        436 IIIVGA-SAAGCVLANRLSEVSSLKVLLIEAGG  467 (720)
Q Consensus       436 VVIIGS-GiAGLvAA~~LAea~G~KVLVLEKG~  467 (720)
                      |+|+|| |..|-.++.+|.++ |++|.++=|..
T Consensus         1 I~V~GatG~vG~~l~~~L~~~-~~~V~~~~R~~   32 (183)
T PF13460_consen    1 ILVFGATGFVGRALAKQLLRR-GHEVTALVRSP   32 (183)
T ss_dssp             EEEETTTSHHHHHHHHHHHHT-TSEEEEEESSG
T ss_pred             eEEECCCChHHHHHHHHHHHC-CCEEEEEecCc
Confidence            799997 99999999999999 99999999873

...

>TIGR03325 BphB_TodD cis-2,3-dihydrobiphenyl-2,3-diol dehydrogenase

Probab=81.51  E-value=1.8  Score=44.66  Aligned_cols=32  Identities=16%  Similarity=0.418  Sum_probs=27.5

Q ss_pred             cEEEECC-cHHHHHHHHHHHhcCCCcEEEEccCC
Q psy14408        435 DIIIVGA-SAAGCVLANRLSEVSSLKVLLIEAGG  467 (720)
Q Consensus       435 DVVIIGS-GiAGLvAA~~LAea~G~KVLVLEKG~  467 (720)
                      -|+|+|| |-.|..+|.+|+++ |.+|++++|..
T Consensus         7 ~vlItGas~gIG~~ia~~l~~~-G~~V~~~~r~~   39 (262)
T TIGR03325         7 VVLVTGGASGLGRAIVDRFVAE-GARVAVLDKSA   39 (262)
T ss_pred             EEEEECCCChHHHHHHHHHHHC-CCEEEEEeCCH
Confidence            5777776 67899999999999 99999998863

Members of this family occur as the BphD protein of biphenyl catabolism and as the TodD protein of toluene catabolism. Members catalyze the second step in each pathway and proved interchangeable when tested; the first and fourth enzymes in each pathway confer metabolic specificity. In the context of biphenyl degradation, the enzyme acts as cis-2,3-dihydrobiphenyl-2,3-diol dehydrogenase (EC 1.3.1.56), while in toluene degradation it acts as cis-toluene dihydrodiol dehydrogenase.

>PRK07060 short chain dehydrogenase; Provisional

Probab=81.49  E-value=1.9  Score=43.58  Aligned_cols=31  Identities=23%  Similarity=0.353  Sum_probs=28.7

Q ss_pred             cEEEECC-cHHHHHHHHHHHhcCCCcEEEEccC
Q psy14408        435 DIIIVGA-SAAGCVLANRLSEVSSLKVLLIEAG  466 (720)
Q Consensus       435 DVVIIGS-GiAGLvAA~~LAea~G~KVLVLEKG  466 (720)
                      -++|+|+ |..|..+|..|+++ |++|+++.|.
T Consensus        11 ~~lItGa~g~iG~~~a~~l~~~-g~~V~~~~r~   42 (245)
T PRK07060         11 SVLVTGASSGIGRACAVALAQR-GARVVAAARN   42 (245)
T ss_pred             EEEEeCCcchHHHHHHHHHHHC-CCEEEEEeCC
Confidence            6899997 89999999999999 9999999986

>PRK08223 hypothetical protein; Validated

Probab=81.46  E-value=1.7  Score=47.13  Aligned_cols=38  Identities=13%  Similarity=0.156  Sum_probs=32.1

Q ss_pred             cCCCcccEEEECCcHHHHHHHHHHHhcCCC-cEEEEccCC
Q psy14408        429 KSGDCFDIIIVGASAAGCVLANRLSEVSSL-KVLLIEAGG  467 (720)
Q Consensus       429 ~~d~eyDVVIIGSGiAGLvAA~~LAea~G~-KVLVLEKG~  467 (720)
                      +...+..|+|||+|-.|+.+|.+||+. |. ++.|+|...
T Consensus        23 ~kL~~s~VlIvG~GGLGs~va~~LA~a-GVG~i~lvD~D~   61 (287)
T PRK08223         23 QRLRNSRVAIAGLGGVGGIHLLTLARL-GIGKFTIADFDV   61 (287)
T ss_pred             HHHhcCCEEEECCCHHHHHHHHHHHHh-CCCeEEEEeCCC
Confidence            344567999999999999999999999 86 688888763

>PRK07831 short chain dehydrogenase; Provisional

Probab=81.44  E-value=1.7  Score=44.73  Aligned_cols=32  Identities=19%  Similarity=0.295  Sum_probs=28.2

Q ss_pred             cEEEECC-c-HHHHHHHHHHHhcCCCcEEEEccCC
Q psy14408        435 DIIIVGA-S-AAGCVLANRLSEVSSLKVLLIEAGG  467 (720)
Q Consensus       435 DVVIIGS-G-iAGLvAA~~LAea~G~KVLVLEKG~  467 (720)
                      -|+|+|| | -.|..+|..|+++ |++|++++++.
T Consensus        19 ~vlItG~sg~gIG~~ia~~l~~~-G~~V~~~~~~~   52 (262)
T PRK07831         19 VVLVTAAAGTGIGSATARRALEE-GARVVISDIHE   52 (262)
T ss_pred             EEEEECCCcccHHHHHHHHHHHc-CCEEEEEeCCH
Confidence            6999997 5 5899999999999 99999998763

>PRK03369 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional

Probab=81.32  E-value=1.7  Score=50.11  Aligned_cols=31  Identities=13%  Similarity=0.332  Sum_probs=28.8

Q ss_pred             cEEEECCcHHHHHHHHHHHhcCCCcEEEEccC
Q psy14408        435 DIIIVGASAAGCVLANRLSEVSSLKVLLIEAG  466 (720)
Q Consensus       435 DVVIIGSGiAGLvAA~~LAea~G~KVLVLEKG  466 (720)
                      -|+|+|.|..|+++|..|.+. |.+|++.|+.
T Consensus        14 ~v~V~G~G~sG~aa~~~L~~~-G~~v~~~D~~   44 (488)
T PRK03369         14 PVLVAGAGVTGRAVLAALTRF-GARPTVCDDD   44 (488)
T ss_pred             eEEEEcCCHHHHHHHHHHHHC-CCEEEEEcCC
Confidence            599999999999999988888 9999999964

>cd00755 YgdL_like Family of activating enzymes (E1) of ubiquitin-like proteins related to the E

Probab=81.30  E-value=1.8  Score=45.34  Aligned_cols=34  Identities=24%  Similarity=0.351  Sum_probs=30.5

Q ss_pred             CcccEEEECCcHHHHHHHHHHHhcCCC-cEEEEccC
Q psy14408        432 DCFDIIIVGASAAGCVLANRLSEVSSL-KVLLIEAG  466 (720)
Q Consensus       432 ~eyDVVIIGSGiAGLvAA~~LAea~G~-KVLVLEKG  466 (720)
                      .+.-|+|||.|-.|..+|..||+. |. +++|+|..
T Consensus        10 ~~~~VlVvG~GGvGs~va~~Lar~-GVg~i~LvD~D   44 (231)
T cd00755          10 RNAHVAVVGLGGVGSWAAEALARS-GVGKLTLIDFD   44 (231)
T ss_pred             hCCCEEEECCCHHHHHHHHHHHHc-CCCEEEEECCC
Confidence            456899999999999999999999 86 78899976

coli hypothetical protein ygdL. The common reaction mechanism catalyzed by E1-like enzymes begins with a nucleophilic attack of the C-terminal carboxylate of the ubiquitin-like substrate, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of the substrate. The exact function of this family is unknown.

>PRK00141 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional

Probab=81.19  E-value=1.7  Score=49.92  Aligned_cols=31  Identities=26%  Similarity=0.471  Sum_probs=29.0

Q ss_pred             cEEEECCcHHHHHHHHHHHhcCCCcEEEEccC
Q psy14408        435 DIIIVGASAAGCVLANRLSEVSSLKVLLIEAG  466 (720)
Q Consensus       435 DVVIIGSGiAGLvAA~~LAea~G~KVLVLEKG  466 (720)
                      -|+|+|.|.+|.++|..|++. |.+|++.|+.
T Consensus        17 ~v~v~G~G~sG~a~a~~L~~~-G~~V~~~D~~   47 (473)
T PRK00141         17 RVLVAGAGVSGRGIAAMLSEL-GCDVVVADDN   47 (473)
T ss_pred             eEEEEccCHHHHHHHHHHHHC-CCEEEEECCC
Confidence            499999999999999999999 9999999974

>PRK06841 short chain dehydrogenase; Provisional

Probab=81.16  E-value=1.9  Score=43.95  Aligned_cols=32  Identities=19%  Similarity=0.364  Sum_probs=28.6

Q ss_pred             cEEEECC-cHHHHHHHHHHHhcCCCcEEEEccCC
Q psy14408        435 DIIIVGA-SAAGCVLANRLSEVSSLKVLLIEAGG  467 (720)
Q Consensus       435 DVVIIGS-GiAGLvAA~~LAea~G~KVLVLEKG~  467 (720)
                      -|+|+|| |..|..+|.+|+++ |++|+++.|..
T Consensus        17 ~vlItGas~~IG~~la~~l~~~-G~~Vi~~~r~~   49 (255)
T PRK06841         17 VAVVTGGASGIGHAIAELFAAK-GARVALLDRSE   49 (255)
T ss_pred             EEEEECCCChHHHHHHHHHHHC-CCEEEEEeCCH
Confidence            4889995 89999999999999 99999999863

>PRK11559 garR tartronate semialdehyde reductase; Provisional

Probab=81.15  E-value=1.8  Score=46.10  Aligned_cols=32  Identities=9%  Similarity=0.250  Sum_probs=29.7

Q ss_pred             cEEEECCcHHHHHHHHHHHhcCCCcEEEEccCC
Q psy14408        435 DIIIVGASAAGCVLANRLSEVSSLKVLLIEAGG  467 (720)
Q Consensus       435 DVVIIGSGiAGLvAA~~LAea~G~KVLVLEKG~  467 (720)
                      .|.|||.|..|...|..|++. |++|++.++..
T Consensus         4 ~IgviG~G~mG~~~a~~l~~~-g~~v~~~d~~~   35 (296)
T PRK11559          4 KVGFIGLGIMGKPMSKNLLKA-GYSLVVYDRNP   35 (296)
T ss_pred             eEEEEccCHHHHHHHHHHHHC-CCeEEEEcCCH
Confidence            699999999999999999999 99999999863

>PF03435 Saccharop_dh: Saccharopine dehydrogenase ; InterPro: IPR005097 This entry represents saccharopine dehydrogenase and homospermidine synthase

Probab=81.14  E-value=1.5  Score=48.64  Aligned_cols=32  Identities=22%  Similarity=0.441  Sum_probs=26.6

Q ss_pred             EEEECCcHHHHHHHHHHHhcCCC-cEEEEccCC
Q psy14408        436 IIIVGASAAGCVLANRLSEVSSL-KVLLIEAGG  467 (720)
Q Consensus       436 VVIIGSGiAGLvAA~~LAea~G~-KVLVLEKG~  467 (720)
                      |+|||+|..|-.+|..|+++.+. +|+|.+|..
T Consensus         1 IlvlG~G~vG~~~~~~L~~~~~~~~v~va~r~~   33 (386)
T PF03435_consen    1 ILVLGAGRVGSAIARLLARRGPFEEVTVADRNP   33 (386)
T ss_dssp             EEEE--SHHHHHHHHHHHCTTCE-EEEEEESSH
T ss_pred             CEEEcCcHHHHHHHHHHhcCCCCCcEEEEECCH
Confidence            79999999999999999998445 899999863

Saccharopine reductase (SR) 1.5.1.10 from EC) catalyses the condensation of l-alpha-aminoadipate-delta-semialdehyde (AASA) with l-glutamate to give an imine, which is reduced by NADPH to give saccharopine []. In some organisms this enzyme is found as a bifunctional polypeptide with lysine ketoglutarate reductase (PF). Saccharopine dehydrogenase can also function as a saccharopine reductase. Homospermidine synthase proteins (2.5.1.44 from EC). Homospermidine synthase (HSS) catalyses the synthesis of the polyamine homospermidine from 2 mol putrescine in an NAD+-dependent reaction [].; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2AXQ_A 1E5Q_A 1FF9_A 1E5L_A 2PH5_A 3IC5_A 3ABI_A.

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	720
3fim_B	566	Crystal Structure Of Aryl-Alcohol-Oxidase From Pleu		1e-22
3t37_A	526	Crystal Structure Of Pyridoxine 4-Oxidase From Meso		5e-22
1gpe_A	587	Glucose Oxidase From Penicillium Amagasakiense Leng		9e-18
3q9t_A	577	Crystal Structure Analysis Of Formate Oxidase Lengt		4e-17
1cf3_A	583	Glucose Oxidase From Apergillus Niger Length = 583		9e-17
3ljp_A	546	Crystal Structure Of Choline Oxidase V464a Mutant L		4e-15
2jbv_A	546	Crystal Structure Of Choline Oxidase Reveals Insigh		5e-15
3nne_A	546	Crystal Structure Of Choline Oxidase S101a Mutant L		7e-15
3gdn_A	521	Almond Hydroxynitrile Lyase In Complex With Benzald		8e-11
1ju2_A	536	Crystal Structure Of The Hydroxynitrile Lyase From		1e-10
3red_A	521	3.0 A Structure Of The Prunus Mume Hydroxynitrile L		2e-10
1kdg_A	546	Crystal Structure Of The Flavin Domain Of Cellobios		4e-04
1naa_A	541	Cellobiose Dehydrogenase Flavoprotein Fragment In C		4e-04

>pdb|3FIM|B Chain B, Crystal Structure Of Aryl-Alcohol-Oxidase From Pleurotus Eryingii Length = 566

Iteration: 1
 Score =  105 bits (261), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 96/309 (31%), Positives = 149/309 (48%), Gaps = 37/309 (11%)
Query: 434 FDIIIVGASAAGCVLANRLSEVSSLKVLLIEAG--GDTPIHSRIPGMS-SVLSLSEFDHA 490
           FD ++VGA  AG V+A RL+E   + VL++EAG   +  + +  P ++  ++  S FD  
Sbjct: 3   FDYVVVGAGNAGNVVAARLTEDPDVSVLVLEAGVSDENVLGAEAPLLAPGLVPNSIFDWN 62
Query: 491 YLAEPSQFAGLGVRNARIKITAGKGLGGSSAVQNILYQRGTSYDYENFAKL-GYNGWGYD 549
           Y    +  A  G     I    G+ LGGSS+V  ++  RG++ D++ +A + G  GW +D
Sbjct: 63  Y----TTTAQAGYNGRSIAYPRGRMLGGSSSVHYMVMMRGSTEDFDRYAAVTGDEGWNWD 118
Query: 550 ETLKYFVKSE------DYRSVIYNESKAVHGTQGYLPVGL--FKNKENNIIREIFETSAQ 601
              ++  K+E      D  +       AVHGT G + + L  F    ++ +    +  ++
Sbjct: 119 NIQQFVRKNEMVVPPADNHNTSGEFIPAVHGTNGSVSISLPGFPTPLDDRVLATTQEQSE 178
Query: 602 E------LGYPCPKDMNDRYVDVGFAELPGMTRYGLRFSAADAYLTPIAGKRTNLYVLKR 655
           E      +G   P  ++     VG          G R S++ AYL P A  R NL VL  
Sbjct: 179 EFFFNPDMGTGHPLGISWSIASVG---------NGQRSSSSTAYLRP-AQSRPNLSVLIN 228
Query: 656 SKVTKVI----INDQNVATGVEYVNSKGE-TVRVTANKEVILTAGAIANAQLLLLSGIGP 710
           ++VTK++     N       VEY   +G  T  V A KEV+L+AG++    LL LSGIG 
Sbjct: 229 AQVTKLVNSGTTNGLPAFRCVEYAEQEGAPTTTVCAKKEVVLSAGSVGTPILLQLSGIGD 288
Query: 711 KAHLDEVKI 719
           +  L  V I
Sbjct: 289 ENDLSSVGI 297

>pdb|3T37|A Chain A, Crystal Structure Of Pyridoxine 4-Oxidase From Mesorbium Loti Length = 526

Iteration: 1
 Score =  102 bits (255), Expect = 5e-22,   Method: Compositional matrix adjust.
 Identities = 97/295 (32%), Positives = 140/295 (47%), Gaps = 31/295 (10%)
Query: 435 DIIIVGASAAGCVLANRLSEVSSLKVLLIEAGGDTPIHSRI--PGMSSVLSLSEFDHAYL 492
           DI+IVG  +AG +LA RLSE    +VLLIEA G+ P    I  P     L    +D  Y 
Sbjct: 19  DIVIVGGGSAGSLLAARLSEDPDSRVLLIEA-GEEPTDPDIWNPAAWPALQGRSYDWDYR 77
Query: 493 AEP-SQFAGLGVRNARIKITAGKGLGGSSAVQNILYQRGTSYDYENFAKL-GYNGWGYDE 550
            E  +  AG     AR     G+ +GGSS +  + Y RG   D++ +    G   WG+DE
Sbjct: 78  TEAQAGTAGRAHHWAR-----GRLIGGSSCLHAMGYMRGHPSDFQAWVDASGDRRWGWDE 132
Query: 551 TLKYFVKSEDYRSVIYNESKAVHGTQGYLPVGLFKNKENNIIREIFETSAQELGYPCPKD 610
            L  F   ED+               G LP+ L  ++ + + R   E  A  LG P  + 
Sbjct: 133 LLPVFQAIEDHPLGGDGIHG----KGGPLPIHLPADEVSPLARAFIEAGAS-LGLPRLEG 187
Query: 611 MNDRYVDVGFAELPGMT------RYGLRFSAADAYLTPIAGKRTNLYVLKRSKVTKVIIN 664
            N         E+ G+T      R G R +AADA+LT     R NL +L  S+V ++ + 
Sbjct: 188 HNS-------GEMIGVTPNSLNIRDGRRVTAADAWLTKAVRGRKNLTILTGSRVRRLKLE 240
Query: 665 DQNVATGVEYVNSKGETVRVTANKEVILTAGAIANAQLLLLSGIGPKAHLDEVKI 719
              V + +E V  +G +  V A+ +++L AGA+ +  LL+ SGIGP   LD   +
Sbjct: 241 GNQVRS-LEVVGRQG-SAEVFAD-QIVLCAGALESPALLMRSGIGPHDVLDAAGV 292

>pdb|1GPE|A Chain A, Glucose Oxidase From Penicillium Amagasakiense Length = 587

Iteration: 1
 Score = 89.0 bits (219), Expect = 9e-18,   Method: Compositional matrix adjust.
 Identities = 89/310 (28%), Positives = 137/310 (44%), Gaps = 32/310 (10%)
Query: 430 SGDCFDIIIVGASAAGCVLANRLSEVSSLKVLLIEAG----GDTPIHSRIPGMSSVLSLS 485
           +G  +D II G    G  +A +L+E   +KVL+IE G     D  I    P     +  +
Sbjct: 21  AGKTYDYIIAGGGLTGLTVAAKLTENPKIKVLVIEKGFYESNDGAIIED-PNAYGQIFGT 79
Query: 486 EFDHAYLAEPSQFAGLGVRNARIKITAGKGLGGSSAVQNILYQRGTSYDYENFAKL-GYN 544
             D  YL  P       + N    I AGKGLGGS+ +    + R      +++ K+ G  
Sbjct: 80  TVDQNYLTVPL------INNRTNNIKAGKGLGGSTLINGDSWTRPDKVQIDSWEKVFGME 133
Query: 545 GWGYDETLKYFVKSEDYRSVIYNESKA-------VHGTQGYLPVGLFKNKE--NNIIREI 595
           GW +D   +Y  K+E  R+    +  A        HGT G +  G   N +  + I++ +
Sbjct: 134 GWNWDNMFEYMKKAEAARTPTAAQLAAGHSFNATCHGTNGTVQSGARDNGQPWSPIMKAL 193
Query: 596 FETSAQELGYPCPKDM---NDRYVDVGFAELPGMTRYGLRFSAADAYLTPIAGKRTNLYV 652
             T    LG P  +D    + R V +    +  +    +R  AA A+L P   +R+NL +
Sbjct: 194 MNT-VSALGVPVQQDFLCGHPRGVSM---IMNNLDENQVRVDAARAWLLPNY-QRSNLEI 248
Query: 653 LKRSKVTKVIINDQNV---ATGVEYVNSKGETVRVTANKEVILTAGAIANAQLLLLSGIG 709
           L    V KV+         A GV +  +K     V A  EV+L AG+  +  +L  SGIG
Sbjct: 249 LTGQMVGKVLFKQTASGPQAVGVNFGTNKAVNFDVFAKHEVLLAAGSAISPLILEYSGIG 308
Query: 710 PKAHLDEVKI 719
            K+ LD+  +
Sbjct: 309 LKSVLDQANV 318

>pdb|3Q9T|A Chain A, Crystal Structure Analysis Of Formate Oxidase Length = 577

Iteration: 1
 Score = 86.7 bits (213), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 82/299 (27%), Positives = 136/299 (45%), Gaps = 31/299 (10%)
Query: 431 GDCFDIIIVGASAAGCVLANRLSEVSSLKVLLIEAGGDTPIHSRIPGM---SSVLSL--S 485
           G  FD +IVG   AG  +A RL+E  ++ VL++EAG   P    IP +   SS + L  S
Sbjct: 4   GSHFDFVIVGGGTAGNTVAGRLAENPNVTVLIVEAGIGNP--EDIPEITTPSSAMDLRNS 61
Query: 486 EFDHAY---LAEPSQFAGLGVRNARIKITAGKGLGGSSAVQNILYQRGTSYDYENFAKLG 542
           ++D AY   +     +  +   N R     GK LGGSS++    +  G    ++ + + G
Sbjct: 62  KYDWAYKTTMVRRDDYERIEKPNTR-----GKTLGGSSSLNYFTWVPGHKATFDQWEEFG 116
Query: 543 YNGWGYDETLKYFVKSEDYRS--VIYNESKAVHGTQGYLPVGLFK-NKENNIIREIFETS 599
              W +D  + Y  KS  Y     +Y+      G  G +P+   +   E    RE    +
Sbjct: 117 GKEWTWDPLVPYLRKSATYHDDPRLYSPELEKIGGGGPIPISHAELIDEMAPFRENLTKA 176
Query: 600 AQELGYPCPKDMNDRYVDVGFAELPGMTRYG---LRFSAADAYLTPIAGKRTNLYVLKRS 656
            + +G P  +++ D        E+ G+T       R   + ++L      + N+ ++   
Sbjct: 177 WKSMGQPLIENIYD-------GEMDGLTHCCDTIYRGQRSGSFL--FVKNKPNITIVPEV 227
Query: 657 KVTKVIINDQN-VATGVEYVNSKGETVRVTANKEVILTAGAIANAQLLLLSGIGPKAHL 714
              ++IIN+ +    GV  V + G  +   A++EVIL+ G     +LL+LSGIGP   L
Sbjct: 228 HSKRLIINEADRTCKGVTVVTAAGNELNFFADREVILSQGVFETPKLLMLSGIGPTREL 286

>pdb|1CF3|A Chain A, Glucose Oxidase From Apergillus Niger Length = 583

Iteration: 1
 Score = 85.5 bits (210), Expect = 9e-17,   Method: Compositional matrix adjust.
 Identities = 88/313 (28%), Positives = 136/313 (43%), Gaps = 37/313 (11%)
Query: 430 SGDCFDIIIVGASAAGCVLANRLSEVSSLKVLLIEAGG----DTPIHSRIPGMSSVLSLS 485
           SG   D II G    G   A RL+E  ++ VL+IE+G       PI   +     +   S
Sbjct: 16  SGRTVDYIIAGGGLTGLTTAARLTENPNISVLVIESGSYESDRGPIIEDLNAYGDIFG-S 74
Query: 486 EFDHAYLAEPSQFAGLGVRNARIKITAGKGLGGSSAVQNILYQRGTSYDYENFAKL-GYN 544
             DHAY     +   L   N    I +G GLGGS+ V    + R      +++  + G  
Sbjct: 75  SVDHAY-----ETVELATNNQTALIRSGNGLGGSTLVNGGTWTRPHKAQVDSWETVFGNE 129
Query: 545 GWGYDETLKYFVKSEDYRSVIYNESKA-------VHGTQGYLPVGLFKNKEN-NIIREIF 596
           GW +D    Y +++E  R+    +  A        HG  G +  G     ++ + I +  
Sbjct: 130 GWNWDNVAAYSLQAERARAPNAKQIAAGHYFNASCHGVNGTVHAGPRDTGDDYSPIVKAL 189
Query: 597 ETSAQELGYPCPKDMNDRYVDVGFAELPGMTRY-------GLRFSAADAYLTPIAGKRTN 649
            ++ ++ G P  KD        G  +  G++ +        +R  AA  +L P   +R N
Sbjct: 190 MSAVEDRGVPTKKDF-------GCGDPHGVSMFPNTLHEDQVRSDAAREWLLPNY-QRPN 241
Query: 650 LYVLKRSKVTKVIINDQNV---ATGVEYVNSKGETVRVTANKEVILTAGAIANAQLLLLS 706
           L VL    V KV+++       A GVE+   KG T  V A  EV+L AG+  +  +L  S
Sbjct: 242 LQVLTGQYVGKVLLSQNGTTPRAVGVEFGTHKGNTHNVYAKHEVLLAAGSAVSPTILEYS 301
Query: 707 GIGPKAHLDEVKI 719
           GIG K+ L+ + I
Sbjct: 302 GIGMKSILEPLGI 314

>pdb|3LJP|A Chain A, Crystal Structure Of Choline Oxidase V464a Mutant Length = 546

Iteration: 1
 Score = 80.1 bits (196), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 90/296 (30%), Positives = 137/296 (46%), Gaps = 25/296 (8%)
Query: 434 FDIIIVGASAAGCVLANRLSEVSSLKVLLIEAGGDTPIHSRIPGMSSVLSLSE--FDHAY 491
           FD I+VG  +AG  +A RLSE  ++ V L+EAG D      +  +   + L E  +D  Y
Sbjct: 14  FDYIVVGGGSAGAAVAARLSEDPAVSVALVEAGPDDRGVPEVLQLDRWMELLESGYDWDY 73
Query: 492 LAEPSQFAGLGVRNARIKITAGKGLGGSSAVQNILYQRGTSYDYENF-AKLGYNGWGYDE 550
             EP +     +R+AR K+     +GG S+  + +       D + + AK G  GW  + 
Sbjct: 74  PIEPQENGNSFMRHARAKV-----MGGCSSHNSCIAFWAPREDLDEWEAKYGATGWNAEA 128
Query: 551 TLKYFVKSEDYRSVIYNESKA----VHGTQGYLPVGLFKNKENNIIREIFETSAQELGYP 606
                     Y+ +  NE        HG  G  PV L      +        + ++ G P
Sbjct: 129 AWPL------YKRLETNEDAGPDAPHHGDSG--PVHLMNVPPKDPTGVALLDACEQAGIP 180
Query: 607 CPKDMNDRYVDVGFAELPGMTRY--GLRFSAADAYLTPIAGKRTNLYVLKRSKVTKVIIN 664
             K  N     V  A    + R   G R S++ +Y+ PI  ++ N  +L   +  +++ +
Sbjct: 181 RAK-FNTGTTVVNGANFFQINRRADGTRSSSSVSYIHPIV-EQENFTLLTGLRARQLVFD 238
Query: 665 DQNVATGVEYVNSK-GETVRVTANKEVILTAGAIANAQLLLLSGIGPKAHLDEVKI 719
                TGV+ V+S  G T R+TA  EV+L+ GAI   +LL+LSGIGP AHL E  I
Sbjct: 239 ADRRCTGVDIVDSAFGHTHRLTARNEVVLSTGAIDTPKLLMLSGIGPAAHLAEHGI 294

>pdb|2JBV|A Chain A, Crystal Structure Of Choline Oxidase Reveals Insights Into The Catalytic Mechanism Length = 546

Iteration: 1
 Score = 79.7 bits (195), Expect = 5e-15,   Method: Compositional matrix adjust.
 Identities = 90/296 (30%), Positives = 137/296 (46%), Gaps = 25/296 (8%)
Query: 434 FDIIIVGASAAGCVLANRLSEVSSLKVLLIEAGGDTPIHSRIPGMSSVLSLSE--FDHAY 491
           FD I+VG  +AG  +A RLSE  ++ V L+EAG D      +  +   + L E  +D  Y
Sbjct: 14  FDYIVVGGGSAGAAVAARLSEDPAVSVALVEAGPDDRGVPEVLQLDRWMELLESGYDWDY 73
Query: 492 LAEPSQFAGLGVRNARIKITAGKGLGGSSAVQNILYQRGTSYDYENF-AKLGYNGWGYDE 550
             EP +     +R+AR K+     +GG S+  + +       D + + AK G  GW  + 
Sbjct: 74  PIEPQENGNSFMRHARAKV-----MGGCSSHNSCIAFWAPREDLDEWEAKYGATGWNAEA 128
Query: 551 TLKYFVKSEDYRSVIYNESKA----VHGTQGYLPVGLFKNKENNIIREIFETSAQELGYP 606
                     Y+ +  NE        HG  G  PV L      +        + ++ G P
Sbjct: 129 AWPL------YKRLETNEDAGPDAPHHGDSG--PVHLMNVPPKDPTGVALLDACEQAGIP 180
Query: 607 CPKDMNDRYVDVGFAELPGMTRY--GLRFSAADAYLTPIAGKRTNLYVLKRSKVTKVIIN 664
             K  N     V  A    + R   G R S++ +Y+ PI  ++ N  +L   +  +++ +
Sbjct: 181 RAK-FNTGTTVVNGANFFQINRRADGTRSSSSVSYIHPIV-EQENFTLLTGLRARQLVFD 238
Query: 665 DQNVATGVEYVNSK-GETVRVTANKEVILTAGAIANAQLLLLSGIGPKAHLDEVKI 719
                TGV+ V+S  G T R+TA  EV+L+ GAI   +LL+LSGIGP AHL E  I
Sbjct: 239 ADRRCTGVDIVDSAFGHTHRLTARNEVVLSTGAIDTPKLLMLSGIGPAAHLAEHGI 294

>pdb|3NNE|A Chain A, Crystal Structure Of Choline Oxidase S101a Mutant Length = 546

Iteration: 1
 Score = 79.3 bits (194), Expect = 7e-15,   Method: Compositional matrix adjust.
 Identities = 90/296 (30%), Positives = 136/296 (45%), Gaps = 25/296 (8%)
Query: 434 FDIIIVGASAAGCVLANRLSEVSSLKVLLIEAGGDTPIHSRIPGMSSVLSLSE--FDHAY 491
           FD I+VG  +AG  +A RLSE  ++ V L+EAG D      +  +   + L E  +D  Y
Sbjct: 14  FDYIVVGGGSAGAAVAARLSEDPAVSVALVEAGPDDRGVPEVLQLDRWMELLESGYDWDY 73
Query: 492 LAEPSQFAGLGVRNARIKITAGKGLGGSSAVQNILYQRGTSYDYENF-AKLGYNGWGYDE 550
             EP +     +R+AR K+     +GG S+    +       D + + AK G  GW  + 
Sbjct: 74  PIEPQENGNSFMRHARAKV-----MGGCSSHNACIAFWAPREDLDEWEAKYGATGWNAEA 128
Query: 551 TLKYFVKSEDYRSVIYNESKA----VHGTQGYLPVGLFKNKENNIIREIFETSAQELGYP 606
                     Y+ +  NE        HG  G  PV L      +        + ++ G P
Sbjct: 129 AWPL------YKRLETNEDAGPDAPHHGDSG--PVHLMNVPPKDPTGVALLDACEQAGIP 180
Query: 607 CPKDMNDRYVDVGFAELPGMTRY--GLRFSAADAYLTPIAGKRTNLYVLKRSKVTKVIIN 664
             K  N     V  A    + R   G R S++ +Y+ PI  ++ N  +L   +  +++ +
Sbjct: 181 RAK-FNTGTTVVNGANFFQINRRADGTRSSSSVSYIHPIV-EQENFTLLTGLRARQLVFD 238
Query: 665 DQNVATGVEYVNSK-GETVRVTANKEVILTAGAIANAQLLLLSGIGPKAHLDEVKI 719
                TGV+ V+S  G T R+TA  EV+L+ GAI   +LL+LSGIGP AHL E  I
Sbjct: 239 ADRRCTGVDIVDSAFGHTHRLTARNEVVLSTGAIDTPKLLMLSGIGPAAHLAEHGI 294

>pdb|3GDN|A Chain A, Almond Hydroxynitrile Lyase In Complex With Benzaldehyde Length = 521

Iteration: 1
 Score = 65.9 bits (159), Expect = 8e-11,   Method: Compositional matrix adjust.
 Identities = 83/295 (28%), Positives = 126/295 (42%), Gaps = 46/295 (15%)
Query: 434 FDIIIVGASAAGCVLANRLSEVSSLKVLLIEAGG-DTPIHSRIPGMSSVLSLSEFDHAYL 492
           +D +IVG   +GC LA  LSE    KVL++E G   T   + +     V +L + D    
Sbjct: 27  YDYVIVGGGTSGCPLAATLSE--KYKVLVLERGSLPTAYPNVLTADGFVYNLQQEDDGKT 84
Query: 493 AEPSQFAGLGVRNARIKITAGKGLGGSSAVQNILYQRGTSYDYENFAKLGYNGWGYDETL 552
                 +  G+ N R     G+ LGG+S +   +Y R  +  Y   +  G + W  D   
Sbjct: 85  PVERFVSEDGIDNVR-----GRVLGGTSIINAGVYARANTSIY---SASGVD-WDMDLVN 135
Query: 553 KYFVKSEDYRSVIY---NESKAVHGTQGYLPVGLFKNKENNIIREIFETSAQELGYPCPK 609
           + +   ED  +++Y   ++S        +L  G+  N                 G+    
Sbjct: 136 QTYEWVED--TIVYKPNSQSWQSVTKTAFLEAGVHPNH----------------GFSLDH 177
Query: 610 DMNDRYVDVGFAELPGMTRYGLRFSAADAYLTPIAGKRTNLYVLKRSKVTKVIINDQ--N 667
           +   R     F      TR+     AAD  L    G   NL V   + V K+I ++    
Sbjct: 178 EEGTRITGSTFDNKG--TRH-----AADELLN--KGNSNNLRVGVHASVEKIIFSNAPGL 228
Query: 668 VATGVEYVNSKG--ETVRVTANKEVILTAGAIANAQLLLLSGIGPKAHLDEVKIP 720
            ATGV Y +S G      V +  EVI++AG I   QLLLLSG+GP+++L  + IP
Sbjct: 229 TATGVIYRDSNGTPHQAFVRSKGEVIVSAGTIGTPQLLLLSGVGPESYLSSLNIP 283

>pdb|1JU2|A Chain A, Crystal Structure Of The Hydroxynitrile Lyase From Almond Length = 536

Iteration: 1
 Score = 65.1 bits (157), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 83/295 (28%), Positives = 126/295 (42%), Gaps = 46/295 (15%)
Query: 434 FDIIIVGASAAGCVLANRLSEVSSLKVLLIEAGG-DTPIHSRIPGMSSVLSLSEFDHAYL 492
           +D +IVG   +GC LA  LSE    KVL++E G   T   + +     V +L + D    
Sbjct: 27  YDYVIVGGGTSGCPLAATLSE--KYKVLVLERGSLPTAYPNVLTADGFVYNLQQEDDGKT 84
Query: 493 AEPSQFAGLGVRNARIKITAGKGLGGSSAVQNILYQRGTSYDYENFAKLGYNGWGYDETL 552
                 +  G+ N R     G+ LGG+S +   +Y R  +  Y   +  G + W  D   
Sbjct: 85  PVERFVSEDGIDNVR-----GRVLGGTSIINAGVYARANTSIY---SASGVD-WDMDLVN 135
Query: 553 KYFVKSEDYRSVIY---NESKAVHGTQGYLPVGLFKNKENNIIREIFETSAQELGYPCPK 609
           + +   ED  +++Y   ++S        +L  G+  N                 G+    
Sbjct: 136 QTYEWVED--TIVYKPNSQSWQSVTKTAFLEAGVHPNH----------------GFSLDH 177
Query: 610 DMNDRYVDVGFAELPGMTRYGLRFSAADAYLTPIAGKRTNLYVLKRSKVTKVIINDQ--N 667
           +   R     F      TR+     AAD  L    G   NL V   + V K+I ++    
Sbjct: 178 EEGTRITGSTFDNKG--TRH-----AADELLNK--GNSNNLRVGVHASVEKIIFSNAPGL 228
Query: 668 VATGVEYVNSKG--ETVRVTANKEVILTAGAIANAQLLLLSGIGPKAHLDEVKIP 720
            ATGV Y +S G      V +  EVI++AG I   QLLLLSG+GP+++L  + IP
Sbjct: 229 TATGVIYRDSNGTPHQAFVRSKGEVIVSAGTIGTPQLLLLSGVGPESYLSSLNIP 283

>pdb|3RED|A Chain A, 3.0 A Structure Of The Prunus Mume Hydroxynitrile Lyase Isozyme-1 Length = 521

Iteration: 1
 Score = 64.7 bits (156), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 79/296 (26%), Positives = 125/296 (42%), Gaps = 47/296 (15%)
Query: 434 FDIIIVGASAAGCVLANRLSEVSSLKVLLIEAGG-DTPIHSRIPGMSSVLSLSEFDHAYL 492
           +D +IVG   +GC LA  LSE    KVL++E G   T   + +     + +L + D    
Sbjct: 27  YDYVIVGGGTSGCPLAATLSE--KYKVLVLERGTLPTAYPNLLTSDGFIYNLQQEDDGQT 84
Query: 493 AEPSQFAGLGVRNARIKITAGKGLGGSSAVQNILYQRGTSYDYENFAKLGYNGWGYDETL 552
                 +G G+ + R     G+ LGG+S +   +Y R  +   + F+  G   W  D   
Sbjct: 85  PVERFVSGDGIDDVR-----GRVLGGTSMINAGVYARANT---KIFSASGIE-WDMDLVN 135
Query: 553 KYFVKSEDYRSVIYNESKAVHGT---QGYLPVGLFKNKENNIIREIFETSAQELGYPCPK 609
           + +   ED  +++Y   K    +     +L  G+  +                 G+    
Sbjct: 136 QTYDWVED--TIVYKPDKQAWQSLTKTAFLEAGVLPDN----------------GFSLDH 177
Query: 610 DMNDRYVDVGFAELPGMTRYGLRFSAADAYLTPIAGKRTNLYVLKRSKVTKVIINDQN-- 667
           +   R     F      TR+     A+D  L    G   NL V   + V K+I +  +  
Sbjct: 178 EAGTRLTGSTFDN--NGTRH-----ASDELLN--KGDPNNLRVAVHASVEKIIFSSNSSG 228
Query: 668 -VATGVEYVNSKG--ETVRVTANKEVILTAGAIANAQLLLLSGIGPKAHLDEVKIP 720
             A GV Y +S G      V    EVI++AG I + QLLLLSG+GP+++L  + IP
Sbjct: 229 VTAIGVIYKDSNGTPHQAFVRGEGEVIVSAGPIGSPQLLLLSGVGPESYLSSLNIP 284

>pdb|1KDG|A Chain A, Crystal Structure Of The Flavin Domain Of Cellobiose Dehydrogenase Length = 546

Iteration: 1
 Score = 43.5 bits (101), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 78/302 (25%), Positives = 119/302 (39%), Gaps = 45/302 (14%)
Query: 434 FDIIIVGASAAGCVLANRLSEVSSLKVLLIEAGGDTPIHSR---IPGMSSVLSLSEFDHA 490
           +D IIVGA   G + A+RLSE    KVLL+E GG +   +    +   ++   L++FD  
Sbjct: 8   YDYIIVGAGPGGIIAADRLSEAGK-KVLLLERGGPSTKQTGGTYVAPWATSSGLTKFD-- 64
Query: 491 YLAEPSQFAGLGVRN------ARIKITAGKGLGGSSAVQNILYQRGTSYDYENFAKLGY- 543
               P  F  L   +        I + AG  +GG ++V   LY      D+   + +G+ 
Sbjct: 65  ---IPGLFESLFTDSNPFWWCKDITVFAGCLVGGGTSVNGALYWYPNDGDFS--SSVGWP 119
Query: 544 NGWG----YDETLKYFVKSEDYRSVIYNESKAVHGTQGYLPVGLFKNKENNIIREIFETS 599
           + W     Y   L   + S D+ S            Q YL       +  N++ ++ +  
Sbjct: 120 SSWTNHAPYTSKLSSRLPSTDHPST---------DGQRYL------EQSFNVVSQLLK-- 162
Query: 600 AQELGYPCPKDMNDRYVDVGFAELPGMTRYGLRFSAADAYLTPIAGKRTNLYVLKRSKVT 659
            Q        D N  Y D  F         G R      YL   A  R N        V+
Sbjct: 163 GQGYNQATIND-NPNYKDHVFGYSAFDFLNGKRAGPVATYLQ-TALARPNFTFKTNVMVS 220
Query: 660 KVIINDQNVATGVEYVN---SKGETVRVTANKEVILTAGAIANAQLLLLSGIGPKAHLDE 716
            V+ N   +  GV+  +        + VT    VIL+AGA   +++L  SGIGP   +  
Sbjct: 221 NVVRNGSQI-LGVQTNDPTLGPNGFIPVTPKGRVILSAGAFGTSRILFQSGIGPTDMIQT 279
Query: 717 VK 718
           V+
Sbjct: 280 VQ 281

>pdb|1NAA|A Chain A, Cellobiose Dehydrogenase Flavoprotein Fragment In Complex With Cellobionolactam Length = 541

Iteration: 1
 Score = 43.5 bits (101), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 78/302 (25%), Positives = 119/302 (39%), Gaps = 45/302 (14%)
Query: 434 FDIIIVGASAAGCVLANRLSEVSSLKVLLIEAGGDTPIHSR---IPGMSSVLSLSEFDHA 490
           +D IIVGA   G + A+RLSE    KVLL+E GG +   +    +   ++   L++FD  
Sbjct: 3   YDYIIVGAGPGGIIAADRLSEAGK-KVLLLERGGPSTKQTGGTYVAPWATSSGLTKFD-- 59
Query: 491 YLAEPSQFAGLGVRN------ARIKITAGKGLGGSSAVQNILYQRGTSYDYENFAKLGY- 543
               P  F  L   +        I + AG  +GG ++V   LY      D+   + +G+ 
Sbjct: 60  ---IPGLFESLFTDSNPFWWCKDITVFAGCLVGGGTSVNGALYWYPNDGDFS--SSVGWP 114
Query: 544 NGWG----YDETLKYFVKSEDYRSVIYNESKAVHGTQGYLPVGLFKNKENNIIREIFETS 599
           + W     Y   L   + S D+ S            Q YL       +  N++ ++ +  
Sbjct: 115 SSWTNHAPYTSKLSSRLPSTDHPST---------DGQRYL------EQSFNVVSQLLK-- 157
Query: 600 AQELGYPCPKDMNDRYVDVGFAELPGMTRYGLRFSAADAYLTPIAGKRTNLYVLKRSKVT 659
            Q        D N  Y D  F         G R      YL   A  R N        V+
Sbjct: 158 GQGYNQATIND-NPNYKDHVFGYSAFDFLNGKRAGPVATYLQ-TALARPNFTFKTNVMVS 215
Query: 660 KVIINDQNVATGVEYVN---SKGETVRVTANKEVILTAGAIANAQLLLLSGIGPKAHLDE 716
            V+ N   +  GV+  +        + VT    VIL+AGA   +++L  SGIGP   +  
Sbjct: 216 NVVRNGSQI-LGVQTNDPTLGPNGFIPVTPKGRVILSAGAFGTSRILFQSGIGPTDMIQT 274
Query: 717 VK 718
           V+
Sbjct: 275 VQ 276

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	720
1gpe_A	587	Protein (glucose oxidase); oxidoreductase(flavopro	2e-86
3qvp_A	583	Glucose oxidase; oxidoreductase; HET: NAG BMA MAN	5e-84
3fim_B	566	ARYL-alcohol oxidase; AAO, lignin degradation, oxi	1e-80
3q9t_A	577	Choline dehydrogenase and related flavoproteins; g	6e-80
2jbv_A	546	Choline oxidase; alcohol oxidation, flavoenyzme ox	1e-77
3t37_A	526	Probable dehydrogenase; BET alpha beta fold, ADP b	4e-77
1kdg_A	546	CDH, cellobiose dehydrogenase; GMC oxidoreductase,	1e-71
1ju2_A	536	HydroxynitrIle lyase; flavin, GMC oxidoreductase,	1e-65
1n4w_A	504	CHOD, cholesterol oxidase; flavoenzyme, steroid me	2e-21
1coy_A	507	Cholesterol oxidase; oxidoreductase(oxygen recepto	3e-19
3pl8_A	623	Pyranose 2-oxidase; substrate complex, H167A mutan	5e-16
3h0g_A	1752	DNA-directed RNA polymerase II subunit RPB1; trans	9e-15
3h0g_A	1752	DNA-directed RNA polymerase II subunit RPB1; trans	6e-14
3h0g_A	1752	DNA-directed RNA polymerase II subunit RPB1; trans	3e-12
1twf_A	1733	B220, DNA-directed RNA polymerase II largest subun	8e-10
1twf_A	1733	B220, DNA-directed RNA polymerase II largest subun	7e-09
1twf_A	1733	B220, DNA-directed RNA polymerase II largest subun	4e-08
1twf_A	1733	B220, DNA-directed RNA polymerase II largest subun	1e-06
1rp0_A	284	ARA6, thiazole biosynthetic enzyme; protein ligand	1e-06
1qo8_A	566	Flavocytochrome C3 fumarate reductase; oxidoreduct	2e-05
1y0p_A	571	Fumarate reductase flavoprotein subunit; flavocyto	3e-05
1d4d_A	572	Flavocytochrome C fumarate reductase; oxidoreducta	8e-05
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	1e-04
2gjc_A	326	Thiazole biosynthetic enzyme, mitochondrial; gluta	1e-04
3cgv_A	397	Geranylgeranyl reductase related protein; NP_39399	2e-04
3jsk_A	344	Cypbp37 protein; octameric thiazole synthase, bios	5e-04
4at0_A	510	3-ketosteroid-delta4-5alpha-dehydrogenase; oxidore	5e-04

>1gpe_A Protein (glucose oxidase); oxidoreductase(flavoprotein); HET: NAG BMA MAN FAD; 1.80A {Penicillium amagasakiense} SCOP: c.3.1.2 d.16.1.1 Length = 587

 Score =  282 bits (724), Expect = 2e-86
 Identities = 84/307 (27%), Positives = 133/307 (43%), Gaps = 24/307 (7%)

Query: 430 SGDCFDIIIVGASAAGCVLANRLSEVSSLKVLLIEAGG---DTPIHSRIPGMSSVLSLSE 486
           +G  +D II G    G  +A +L+E   +KVL+IE G    +       P     +  + 
Sbjct: 21  AGKTYDYIIAGGGLTGLTVAAKLTENPKIKVLVIEKGFYESNDGAIIEDPNAYGQIFGTT 80

Query: 487 FDHAYLAEPSQFAGLGVRNARIKITAGKGLGGSSAVQNILYQRGTSYDYENFAKL-GYNG 545
            D  YL  P     +  R     I AGKGLGGS+ +    + R      +++ K+ G  G
Sbjct: 81  VDQNYLTVP----LINNR--TNNIKAGKGLGGSTLINGDSWTRPDKVQIDSWEKVFGMEG 134

Query: 546 WGYDETLKYFVKSEDYR-------SVIYNESKAVHGTQGYLPVGLFKN-KENNIIREIFE 597
           W +D   +Y  K+E  R       +  ++ +   HGT G +  G   N +  + I +   
Sbjct: 135 WNWDNMFEYMKKAEAARTPTAAQLAAGHSFNATCHGTNGTVQSGARDNGQPWSPIMKALM 194

Query: 598 TSAQELGYPCPKDMNDRYVDVGFAELPG-MTRYGLRFSAADAYLTPIAGKRTNLYVLKRS 656
            +   LG P  +D        G + +   +    +R  AA A+L P   +R+NL +L   
Sbjct: 195 NTVSALGVPVQQDFL-CGHPRGVSMIMNNLDENQVRVDAARAWLLPNY-QRSNLEILTGQ 252

Query: 657 KVTKVIINDQN---VATGVEYVNSKGETVRVTANKEVILTAGAIANAQLLLLSGIGPKAH 713
            V KV+         A GV +  +K     V A  EV+L AG+  +  +L  SGIG K+ 
Sbjct: 253 MVGKVLFKQTASGPQAVGVNFGTNKAVNFDVFAKHEVLLAAGSAISPLILEYSGIGLKSV 312

Query: 714 LDEVKIP 720
           LD+  + 
Sbjct: 313 LDQANVT 319

>3qvp_A Glucose oxidase; oxidoreductase; HET: NAG BMA MAN FAD; 1.20A {Aspergillus niger} PDB: 1gal_A* 1cf3_A* 3qvr_A* Length = 583

 Score =  276 bits (708), Expect = 5e-84
 Identities = 84/307 (27%), Positives = 129/307 (42%), Gaps = 23/307 (7%)

Query: 430 SGDCFDIIIVGASAAGCVLANRLSEVSSLKVLLIEAGG---DTPIHSRIPGMSSVLSLSE 486
           SG   D II G    G   A RL+E  ++ VL+IE+G    D             +  S 
Sbjct: 16  SGRTVDYIIAGGGLTGLTTAARLTENPNISVLVIESGSYESDRGPIIEDLNAYGDIFGSS 75

Query: 487 FDHAYLAEPSQFAGLGVRNARIKITAGKGLGGSSAVQNILYQRGTSYDYENFAKL-GYNG 545
            DHAY            +     I +G GLGGS+ V    + R      +++  + G  G
Sbjct: 76  VDHAYETVE---LATNNQ--TALIRSGNGLGGSTLVNGGTWTRPHKAQVDSWETVFGNEG 130

Query: 546 WGYDETLKYFVKSEDYRSVIYNESK-------AVHGTQGYLPVGLFK-NKENNIIREIFE 597
           W +D    Y +++E  R+    +         + HG  G +  G      + + I +   
Sbjct: 131 WNWDNVAAYSLQAERARAPNAKQIAAGHYFNASCHGVNGTVHAGPRDTGDDYSPIVKALM 190

Query: 598 TSAQELGYPCPKDMNDRYVDVGFAELPG-MTRYGLRFSAADAYLTPIAGKRTNLYVLKRS 656
           ++ ++ G P  KD        G +  P  +    +R  AA  +L P   +R NL VL   
Sbjct: 191 SAVEDRGVPTKKDFG-CGDPHGVSMFPNTLHEDQVRSDAAREWLLPNY-QRPNLQVLTGQ 248

Query: 657 KVTKVIINDQNV---ATGVEYVNSKGETVRVTANKEVILTAGAIANAQLLLLSGIGPKAH 713
            V KV+++       A GVE+   KG T  V A  EV+L AG+  +  +L  SGIG K+ 
Sbjct: 249 YVGKVLLSQNGTTPRAVGVEFGTHKGNTHNVYAKHEVLLAAGSAVSPTILEYSGIGMKSI 308

Query: 714 LDEVKIP 720
           L+ + I 
Sbjct: 309 LEPLGID 315

>3fim_B ARYL-alcohol oxidase; AAO, lignin degradation, oxidoreductase, flavoprotein; HET: FAD; 2.55A {Pleurotus eryngii} Length = 566

 Score =  266 bits (683), Expect = 1e-80
 Identities = 90/305 (29%), Positives = 136/305 (44%), Gaps = 27/305 (8%)

Query: 434 FDIIIVGASAAGCVLANRLSEVSSLKVLLIEAGG--DTPIHSRIP-GMSSVLSLSEFDHA 490
           FD ++VGA  AG V+A RL+E   + VL++EAG   +  + +  P     ++  S FD  
Sbjct: 3   FDYVVVGAGNAGNVVAARLTEDPDVSVLVLEAGVSDENVLGAEAPLLAPGLVPNSIFDWN 62

Query: 491 YLAEPSQFAGLGVRNARIKITAGKGLGGSSAVQNILYQRGTSYDYENFAKL-GYNGWGYD 549
           Y       AG   R   I    G+ LGGSS+V  ++  RG++ D++ +A + G  GW +D
Sbjct: 63  YTTTAQ--AGYNGR--SIAYPRGRMLGGSSSVHYMVMMRGSTEDFDRYAAVTGDEGWNWD 118

Query: 550 ETLKYFVKSEDY------RSVIYNESKAVHGTQGYLPVGLFKNKENNIIREIFETSAQEL 603
              ++  K+E         +       AVHGT G + + L        + +    + QE 
Sbjct: 119 NIQQFVRKNEMVVPPADNHNTSGEFIPAVHGTNGSVSISLPGFP--TPLDDRVLATTQEQ 176

Query: 604 GYPCPK--DMNDRYVDVGFAELPGMTRYGLRFSAADAYLTPIAGKRTNLYVLKRSKVTKV 661
                   DM      +G +        G R S++ AYL P A  R NL VL  ++VTK+
Sbjct: 177 SEEFFFNPDMG-TGHPLGISWSIASVGNGQRSSSSTAYLRP-AQSRPNLSVLINAQVTKL 234

Query: 662 IINDQN------VATGVEYVNSKGETVRVTANKEVILTAGAIANAQLLLLSGIGPKAHLD 715
           + +                      T  V A KEV+L+AG++    LL LSGIG +  L 
Sbjct: 235 VNSGTTNGLPAFRCVEYAE-QEGAPTTTVCAKKEVVLSAGSVGTPILLQLSGIGDENDLS 293

Query: 716 EVKIP 720
            V I 
Sbjct: 294 SVGID 298

>3q9t_A Choline dehydrogenase and related flavoproteins; glucose-methanol-choline oxidoreductase family, formate OXID formyl-FAD, oxidoreductase; HET: FAY; 2.24A {Aspergillus oryzae} Length = 577

 Score =  265 bits (679), Expect = 6e-80
 Identities = 77/296 (26%), Positives = 123/296 (41%), Gaps = 19/296 (6%)

Query: 434 FDIIIVGASAAGCVLANRLSEVSSLKVLLIEAGGDTP-----IHSRIPGMSSVLSLSEFD 488
           FD +IVG   AG  +A RL+E  ++ VL++EAG   P     I    P  +  L  S++D
Sbjct: 7   FDFVIVGGGTAGNTVAGRLAENPNVTVLIVEAGIGNPEDIPEIT--TPSSAMDLRNSKYD 64

Query: 489 HAYLAEPSQFAGLGVRNARIKITAGKGLGGSSAVQNILYQRGTSYDYENFAKLGYNGWGY 548
            AY                   T GK LGGSS++    +  G    ++ + + G   W +
Sbjct: 65  WAYKTTMV--RRDDYERIEKPNTRGKTLGGSSSLNYFTWVPGHKATFDQWEEFGGKEWTW 122

Query: 549 DETLKYFVKSEDYR--SVIYNESKAVHGTQGYLPVGLFKNK-ENNIIREIFETSAQELGY 605
           D  + Y  KS  Y     +Y+      G  G +P+   +   E    RE    + + +G 
Sbjct: 123 DPLVPYLRKSATYHDDPRLYSPELEKIGGGGPIPISHAELIDEMAPFRENLTKAWKSMGQ 182

Query: 606 PCPKDMNDRYVDVGFAELPGMTRYGLRFSAADAYLTPIAGKRTNLYVLKRSKVTKVIIND 665
           P  +++ D     G          G R  +           + N+ ++      ++IIN+
Sbjct: 183 PLIENIYD-GEMDGLTHCCDTIYRGQRSGSFLF-----VKNKPNITIVPEVHSKRLIINE 236

Query: 666 QN-VATGVEYVNSKGETVRVTANKEVILTAGAIANAQLLLLSGIGPKAHLDEVKIP 720
            +    GV  V + G  +   A++EVIL+ G     +LL+LSGIGP   L    I 
Sbjct: 237 ADRTCKGVTVVTAAGNELNFFADREVILSQGVFETPKLLMLSGIGPTRELSRHGIN 292

>2jbv_A Choline oxidase; alcohol oxidation, flavoenyzme oxidase, covalently linked FAD, C4A-adduct, flavoprotein, oxidoreductase; HET: FAO; 1.86A {Arthrobacter globiformis} PDB: 3nne_A* 3ljp_A* Length = 546

 Score =  257 bits (660), Expect = 1e-77
 Identities = 80/292 (27%), Positives = 126/292 (43%), Gaps = 15/292 (5%)

Query: 434 FDIIIVGASAAGCVLANRLSEVSSLKVLLIEAGG-DTPIHSRIP-GMSSVLSLSEFDHAY 491
           FD I+VG  +AG  +A RLSE  ++ V L+EAG  D  +   +       L  S +D  Y
Sbjct: 14  FDYIVVGGGSAGAAVAARLSEDPAVSVALVEAGPDDRGVPEVLQLDRWMELLESGYDWDY 73

Query: 492 LAEPSQFAGLGVRNARIKITAGKGLGGSSAVQNILYQRGTSYDYEN-FAKLGYNGWGYDE 550
             EP         N+ ++    K +GG S+  + +       D +   AK G  GW  + 
Sbjct: 74  PIEPQ--ENG---NSFMRHARAKVMGGCSSHNSCIAFWAPREDLDEWEAKYGATGWNAEA 128

Query: 551 TLKYFVKSEDYRSVIYNESKAVHGTQGYLPVGLFKNKENNIIREIFETSAQELGYPCPKD 610
               + + E             HG  G + +        +        + ++ G P  K 
Sbjct: 129 AWPLYKRLETNE--DAGPDAPHHGDSGPVHLM--NVPPKDPTGVALLDACEQAGIPRAKF 184

Query: 611 MNDRYVDVGFAELPGMTRY-GLRFSAADAYLTPIAGKRTNLYVLKRSKVTKVIINDQNVA 669
                V  G        R  G R S++ +Y+ P   ++ N  +L   +  +++ +     
Sbjct: 185 NTGTTVVNGANFFQINRRADGTRSSSSVSYIHP-IVEQENFTLLTGLRARQLVFDADRRC 243

Query: 670 TGVEYV-NSKGETVRVTANKEVILTAGAIANAQLLLLSGIGPKAHLDEVKIP 720
           TGV+ V ++ G T R+TA  EV+L+ GAI   +LL+LSGIGP AHL E  I 
Sbjct: 244 TGVDIVDSAFGHTHRLTARNEVVLSTGAIDTPKLLMLSGIGPAAHLAEHGIE 295

>3t37_A Probable dehydrogenase; BET alpha beta fold, ADP binding, oxidoreductase; HET: FAD; 2.19A {Mesorhizobium loti} Length = 526

 Score =  256 bits (656), Expect = 4e-77
 Identities = 92/289 (31%), Positives = 131/289 (45%), Gaps = 15/289 (5%)

Query: 434 FDIIIVGASAAGCVLANRLSEVSSLKVLLIEAGG-DTPIHSRIPGMSSVLSLSEFDHAYL 492
            DI+IVG  +AG +LA RLSE    +VLLIEAG   T      P     L    +D  Y 
Sbjct: 18  CDIVIVGGGSAGSLLAARLSEDPDSRVLLIEAGEEPTDPDIWNPAAWPALQGRSYDWDYR 77

Query: 493 AEPSQFAGLGVRNARIKITAGKGLGGSSAVQNILYQRGTSYDYENFAKL-GYNGWGYDET 551
            E    AG   R        G+ +GGSS +  + Y RG   D++ +    G   WG+DE 
Sbjct: 78  TEAQ--AGTAGR--AHHWARGRLIGGSSCLHAMGYMRGHPSDFQAWVDASGDRRWGWDEL 133

Query: 552 LKYFVKSEDYRSVIYNESKAVHGTQGYLPVGLFKNKENNIIREIFETSAQELGYPCPKDM 611
           L  F   ED+          +HG  G LP+      E + +   F  +   LG P  +  
Sbjct: 134 LPVFQAIEDH----PLGGDGIHGKGGPLPIH-LPADEVSPLARAFIEAGASLGLPRLEGH 188

Query: 612 NDRYVDVGFAELPGMTRYGLRFSAADAYLTPIAGKRTNLYVLKRSKVTKVIINDQNVATG 671
           N     +G        R G R +AADA+LT     R NL +L  S+V ++ + + N    
Sbjct: 189 N-SGEMIGVTPNSLNIRDGRRVTAADAWLTKAVRGRKNLTILTGSRVRRLKL-EGNQVRS 246

Query: 672 VEYVNSKGETVRVTANKEVILTAGAIANAQLLLLSGIGPKAHLDEVKIP 720
           +E V  +  +  V A  +++L AGA+ +  LL+ SGIGP   LD   + 
Sbjct: 247 LEVV-GRQGSAEVFA-DQIVLCAGALESPALLMRSGIGPHDVLDAAGVG 293

>1kdg_A CDH, cellobiose dehydrogenase; GMC oxidoreductase, PHBH fold, alpha/beta structure, rossman 6-hydroxylated FAD, oxidoreductase; HET: NAG MAN 6FA EMT; 1.50A {Phanerochaete chrysosporium} SCOP: c.3.1.2 d.16.1.1 PDB: 1naa_A* Length = 546

 Score =  241 bits (618), Expect = 1e-71
 Identities = 73/304 (24%), Positives = 111/304 (36%), Gaps = 37/304 (12%)

Query: 430 SGDCFDIIIVGASAAGCVLANRLSEVSSLKVLLIEAGG-DTPIHSRIPGMSSVLS--LSE 486
           S   +D IIVGA   G + A+RLSE +  KVLL+E GG  T             S  L++
Sbjct: 4   SATPYDYIIVGAGPGGIIAADRLSE-AGKKVLLLERGGPSTKQTGGTYVAPWATSSGLTK 62

Query: 487 FDH-----AYLAEPSQFAGLGVRNARIKITAGKGLGGSSAVQNILYQRGTSYDYENFAKL 541
           FD      +   + +       +   I + AG  +GG ++V   LY      D+      
Sbjct: 63  FDIPGLFESLFTDSN--PFWWCK--DITVFAGCLVGGGTSVNGALYWYPNDGDFS----- 113

Query: 542 GYNGW--GYDETLKYFVKSEDYRSVIYNESKAVHGTQGYLPVGLFKNKENNIIREIFETS 599
              GW   +     Y  K           S     T G   +     +  N++ ++ +  
Sbjct: 114 SSVGWPSSWTNHAPYTSKLSSRLP-----STDHPSTDGQRYL----EQSFNVVSQLLK-- 162

Query: 600 AQELGYPCPKDMNDRYVDVGFAELPGMTRYGLRFSAADAYLTPIAGKRTNLYVLKRSKVT 659
            Q        D  + Y D  F         G R      YL   A  R N        V+
Sbjct: 163 GQGYNQATINDNPN-YKDHVFGYSAFDFLNGKRAGPVATYLQT-ALARPNFTFKTNVMVS 220

Query: 660 KVIINDQNVATGVEYVNS---KGETVRVTANKEVILTAGAIANAQLLLLSGIGPKAHLDE 716
            V+  + +   GV+  +        + VT    VIL+AGA   +++L  SGIGP   +  
Sbjct: 221 NVVR-NGSQILGVQTNDPTLGPNGFIPVTPKGRVILSAGAFGTSRILFQSGIGPTDMIQT 279

Query: 717 VKIP 720
           V+  
Sbjct: 280 VQSN 283

>1ju2_A HydroxynitrIle lyase; flavin, GMC oxidoreductase, almond, cyanogenesis; HET: NAG NDG FUC BMA MAN FAD; 1.47A {Prunus dulcis} SCOP: c.3.1.2 d.16.1.1 PDB: 3gdp_A* 3gdn_A* Length = 536

 Score =  225 bits (576), Expect = 1e-65
 Identities = 73/293 (24%), Positives = 114/293 (38%), Gaps = 42/293 (14%)

Query: 434 FDIIIVGASAAGCVLANRLSEVSSLKVLLIEAGGDTPIHSRIPGMSSVLSLSEFDHAYLA 493
           +D +IVG   +GC LA  LSE    KVL++E G     +  +      +   + +     
Sbjct: 27  YDYVIVGGGTSGCPLAATLSE--KYKVLVLERGSLPTAYPNVLTADGFVYNLQQEDDGKT 84

Query: 494 EPSQFA-GLGVRNARIKITAGKGLGGSSAVQNILYQRGTSYDYENFAKLGYNGWGYDETL 552
              +F    G+ N R     G+ LGG+S +   +Y R  +  Y          W  D   
Sbjct: 85  PVERFVSEDGIDNVR-----GRVLGGTSIINAGVYARANTSIYSASGV----DWDMDLVN 135

Query: 553 KYFVKSEDYRSVIYNESKAVHGTQGYLPVGLFKNKENNIIREIFETSAQELGYPCPKDMN 612
           + +   ED                             ++ +  F  +     +      +
Sbjct: 136 QTYEWVEDTI--------VYKPNSQSW---------QSVTKTAFLEAGVHPNH----GFS 174

Query: 613 DRYVDVGFAELPGMT-RYGLRFSAADAYLTPIAGKRTNLYVLKRSKVTKVIINDQ--NVA 669
             + + G   + G T        AAD  L    G   NL V   + V K+I ++     A
Sbjct: 175 LDHEE-GTR-ITGSTFDNKGTRHAADELLNK--GNSNNLRVGVHASVEKIIFSNAPGLTA 230

Query: 670 TGVEYVNSKG--ETVRVTANKEVILTAGAIANAQLLLLSGIGPKAHLDEVKIP 720
           TGV Y +S G      V +  EVI++AG I   QLLLLSG+GP+++L  + IP
Sbjct: 231 TGVIYRDSNGTPHQAFVRSKGEVIVSAGTIGTPQLLLLSGVGPESYLSSLNIP 283

>1n4w_A CHOD, cholesterol oxidase; flavoenzyme, steroid metabolism, oxidoreductase, atomic RESO; HET: FAD; 0.92A {Streptomyces SP} SCOP: c.3.1.2 d.16.1.1 PDB: 1b4v_A* 1n1p_A* 1n4u_A* 1n4v_A* 1mxt_A* 2gew_A* 1b8s_A* 3gyi_A* 1cc2_A* 3gyj_A* 1ijh_A* 1cbo_A* 3b3r_A* 3b6d_A* 3cnj_A* Length = 504

 Score = 97.8 bits (243), Expect = 2e-21
 Identities = 52/321 (16%), Positives = 101/321 (31%), Gaps = 53/321 (16%)

Query: 430 SGDCFDIIIVGASAAGCVLANRLSEVSSLKVLLIEAG----GDTPIHSRIPGMSSVLS-L 484
           +G     +++G      V A RL E + ++ L++E G       P  +   GM +     
Sbjct: 2   NGGYVPAVVIGTGYGAAVSALRLGE-AGVQTLMLEMGQLWNQPGPDGNIFCGMLNPDKRS 60

Query: 485 SEFDHAYLAEPSQFAGLGVRNAR---------------IKITAGKGLGGSSAVQNILYQR 529
           S F +   A    F  L V N                 + +  G+G+GG S V   +   
Sbjct: 61  SWFKNRTEAPLGSFLWLDVVNRNIDPYAGVLDRVNYDQMSVYVGRGVGGGSLVNGGMAVE 120

Query: 530 GTSYDYENFAKLGYNGWGYDETLKYFVKSEDYRSVIYNESKAVHGTQGYLPVGLFKNKEN 589
                +E             E    +          +  + ++           F++ E 
Sbjct: 121 PKRSYFEEIL----PRVDSSEMYDRY----------FPRANSMLRVNHIDT-KWFEDTEW 165

Query: 590 NIIREIFETSAQELGYPC---------PKDMNDRYVDVGFAELPGMTRYGLR---FSAAD 637
                +    A + G                 +   +V  + L     YG      S   
Sbjct: 166 YKFARVSREQAGKAGLGTVFVPNVYDFGYMQREAAGEVPKSALATEVIYGNNHGKQSLDK 225

Query: 638 AYLTPIAGKRTNLYVLKRSKVTKVIINDQNV-ATGVEYVNSKGETV--RVTANKEVILTA 694
            YL   A     + +    +V  +        A  VE  ++ G+ +  +  + + + L A
Sbjct: 226 TYL-AAALGTGKVTIQTLHQVKTIRQTKDGGYALTVEQKDTDGKLLATKEISCRYLFLGA 284

Query: 695 GAIANAQLLLLSGI-GPKAHL 714
           G++ + +LL+ +   G   +L
Sbjct: 285 GSLGSTELLVRARDTGTLPNL 305

>1coy_A Cholesterol oxidase; oxidoreductase(oxygen receptor); HET: AND FAD; 1.80A {Brevibacterium sterolicum} SCOP: c.3.1.2 d.16.1.1 PDB: 3cox_A* Length = 507

 Score = 90.6 bits (224), Expect = 3e-19
 Identities = 55/318 (17%), Positives = 96/318 (30%), Gaps = 52/318 (16%)

Query: 424 MTPYVKSGDCFDIIIVGASAAGCVLANRLSEVSSLKVLLIEAGG--DTP----------- 470
                  GD    +++G+   G V A RL++ + +   ++E G   DTP           
Sbjct: 3   SRTL-ADGDRVPALVIGSGYGGAVAALRLTQ-AGIPTQIVEMGRSWDTPGSDGKIFCGML 60

Query: 471 ------IHSRIPGMSSVLSLSEFDHAYLAEPSQFAGLGVRNARIKITAGKGLGGSSAVQN 524
                 +         V +   F      +         R + IK+  G+G+GG S V  
Sbjct: 61  NPDKRSMWLADKTDQPVSNFMGFGINKSIDRYVGVLDSERFSGIKVYQGRGVGGGSLVNG 120

Query: 525 ILYQRGTSYDYENFAKLGYNGWGYDETLKYFVKSEDYRSVIYNESKAVHGTQGYLPVGLF 584
            +        +E            +   KYF ++               G         F
Sbjct: 121 GMAVTPKRNYFEEILPS---VDSNEMYNKYFPRAN-----------TGLGVNNIDQ-AWF 165

Query: 585 KNKENNIIREIFETSAQELGYPCPKDMNDRYVDVGFAELPGMTR------------YGLR 632
           ++ E          +AQ  G+      N    +    E  G                  +
Sbjct: 166 ESTEWYKFARTGRKTAQRSGFTTAFVPNVYDFEYMKKEAAGQVTKSGLGGEVIYGNNAGK 225

Query: 633 FSAADAYLTPIAGKRTNLYVLKRSKVTKVII-NDQNVATGVEYVNSKGETV--RVTANKE 689
            S    YL   A     L +    +VTKV        +  +E ++ +G  V  +V     
Sbjct: 226 KSLDKTYL-AQAAATGKLTITTLHRVTKVAPATGSGYSVTMEQIDEQGNVVATKVVTADR 284

Query: 690 VILTAGAIANAQLLLLSG 707
           V   AG++  ++LL+   
Sbjct: 285 VFFAAGSVGTSKLLVSMK 302

>3pl8_A Pyranose 2-oxidase; substrate complex, H167A mutant, homotetramer, GMC oxidoredu PHBH fold, rossmann domain, oxidoreductase; HET: FAD MES G3F; 1.35A {Trametes ochracea} PDB: 2igo_A* 3lsm_A* 2ign_A* 3k4c_A* 1tt0_A* 2igk_A* 3k4b_A* 3lsk_A* 3bg6_A* 3lsh_A* 3lsi_A* 2igm_A* 3k4j_A* 3k4m_A* 3bg7_A* 3k4k_A* 3k4l_A* 3bly_A* 1tzl_A* 3fdy_A* ... Length = 623

 Score = 81.0 bits (199), Expect = 5e-16
 Identities = 47/361 (13%), Positives = 93/361 (25%), Gaps = 47/361 (13%)

Query: 377 PENPNSPYNPFNENSLYHPGNPDSP-YDWQRLEKERYNIYRSVIYPPDMTPYVKSGDCFD 435
             + + P+  F ++S        +       L              P M         +D
Sbjct: 2   STSSSDPFFNFAKSSFRSAAAQKASASSLPPLPGPDKK-------VPGMDI------KYD 48

Query: 436 IIIVGASAAGCVLANRLSEVSSLKVLLIEAGGDTPIHSRIPGMSSVLS----LSEFDHAY 491
           ++IVG+   GC  A  L   +  KV + + G             + +     + +F +  
Sbjct: 49  VVIVGSGPIGCTYARELVG-AGYKVAMFDIGEIDSGLKIGAHKKNTVEYQKNIDKFVNVI 107

Query: 492 LAEPSQFAGLGVRNARIKITAGKGLGGSSAVQNILYQRGTSYDYENFAKLGY------NG 545
             +    +          ++       +  V+N            +   +          
Sbjct: 108 QGQLMSVSVPVNTLVVDTLSPTSWQASTFFVRNGSNPEQDPLRNLSGQAVTRVVGGMSTA 167

Query: 546 WG------YDETLKYFVKSEDYRS-----VIYNESKAVHGTQGYLPVGLFKNKENNIIRE 594
           W         E     VK +          +Y ++++   T                IR 
Sbjct: 168 WTCATPRFDREQRPLLVKDDADADDAEWDRLYTKAESYFQTGTDQFKE--------SIRH 219

Query: 595 IFETSAQELGYPCPKDMNDRYVDVGFAELPGMTRYGLRFSAADAYLTPIAGKRTNLYVLK 654
               +     Y   +D     +         +                         +  
Sbjct: 220 NLVLNKLTEEYKGQRDFQQIPLAATRRSPTFVEWSSANTVFDLQNRPNTDAPEERFNLFP 279

Query: 655 RSKVTKVIINDQN-VATGVEYVNSK-GETVRVTANKEVILTAGAIANAQLLLLSGIGPKA 712
                +V+ N  N     +   +   G+   + A    +LTAGA+ N QLL+ SG G   
Sbjct: 280 AVACERVVRNALNSEIESLHIHDLISGDRFEIKA-DVYVLTAGAVHNTQLLVNSGFGQLG 338

Query: 713 H 713
            
Sbjct: 339 R 339

>3h0g_A DNA-directed RNA polymerase II subunit RPB1; transcription, multi-protein complex, DNA- binding, magnesium; 3.65A {Schizosaccharomyces pombe} Length = 1752

 Score = 77.8 bits (191), Expect = 9e-15
 Identities = 95/330 (28%), Positives = 126/330 (38%), Gaps = 72/330 (21%)

Query: 62   PYSNTDDIYNPFSPINQYSPYSPYNTDSLFDNTHPESLLNPYNPESLLSPLNP-RSVFYP 120
            PY  +  + + F      + +SP         +        Y      SP    +S  Y 
Sbjct: 1485 PYERSPMVDSGFVGSPDAAAFSPLVQGG----SEGREGFGDYGLLGAASPYKGVQSPGYT 1540

Query: 121  SNPEVPSFDYNNPNSPFNPYNPSSVFNPKNIDSVFNPRNPDSPYYNQYQFLYSPLSPYNP 180
            S             SP   Y+PSS            P    SP Y      YSP SP   
Sbjct: 1541 SPFSSAMSPGYGLTSP--SYSPSS------------PGYSTSPAYMPSSPSYSPTSP--- 1583

Query: 181  RSLFSSQNPLSPLSPLNANSPYNPRNQISYYNIENPKSPYNIHNPESPLYS-DSPYYYRN 239
                      SP SP  + SP +P    SY    +P SP   ++  SP YS  SP Y   
Sbjct: 1584 --------SYSPTSP--SYSPTSP----SY----SPTSPS--YSATSPSYSPTSPSYSPT 1623

Query: 240  LPLYNPVETELIDQYS-TSVYNNPDSP-LSINSPHSVLNPYNLDSILNPFNVKSP-LSPE 296
             P Y+P        YS TS   +P SP  S  SP       +       ++  SP  SP 
Sbjct: 1624 SPSYSPTSP----SYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPT 1679

Query: 297  NPA-SPFNP-YNP-EPSIFDSHNIYSFFSPHNPYSPFNP-YNIDSPFNSDNPDSPFRNYP 352
            +P+ SP +P Y+P  PS   +   YS  SP   YSP +P Y+  SP  S +P SP     
Sbjct: 1680 SPSYSPTSPSYSPTSPSYSPTSPSYSPTSPS--YSPTSPSYSPTSP--SYSPTSP----- 1730

Query: 353  QYSRYNPKNPE-SPFSPQNEDSIYNPENPN 381
                Y+P +P  SP SP      Y+P +P+
Sbjct: 1731 ---SYSPTSPSYSPTSPS-----YSPTSPS 1752

>3h0g_A DNA-directed RNA polymerase II subunit RPB1; transcription, multi-protein complex, DNA- binding, magnesium; 3.65A {Schizosaccharomyces pombe} Length = 1752

 Score = 75.1 bits (184), Expect = 6e-14
 Identities = 92/316 (29%), Positives = 124/316 (39%), Gaps = 60/316 (18%)

Query: 83   SPYNTDSLFDNTHPESLLNPYNPESLLSPLNPRSVFYPSNPEVPSFDYNNPNSPFNPYNP 142
            +PY    + D+    S        +  SPL                         +PY  
Sbjct: 1484 TPYERSPMVDSGFVGS-----PDAAAFSPLVQGGSEGREGFGDYG-----LLGAASPYKG 1533

Query: 143  SSVFNPKNIDSVFNPRNPDSPYYNQYQFLYSPLSPYNPRS-LFSSQNP-LSPLSP-LNAN 199
                +P          +  SP Y      YSP SP    S  +   +P  SP SP  +  
Sbjct: 1534 V--QSPGYTS---PFSSAMSPGYGLTSPSYSPSSPGYSTSPAYMPSSPSYSPTSPSYSPT 1588

Query: 200  SP-YNPRNQISYYNIENPKSPYNIHNPESPLYS-DSPYYYRNLPLYNPVETELIDQYS-T 256
            SP Y+P +    Y   +P SP   ++  SP YS  SP Y    P Y+P        YS T
Sbjct: 1589 SPSYSPTS--PSY---SPTSPS--YSATSPSYSPTSPSYSPTSPSYSPTSP----SYSPT 1637

Query: 257  SVYNNPDSP-LSINSPHSVLNPYNLDSILNPFNVKSPLSPE-NPASP-FNPYNPEPSIFD 313
            S   +P SP  S  SP    +P +           SP SP  +P SP ++P +P  S   
Sbjct: 1638 SPSYSPTSPSYSPTSPSY--SPTS--------PSYSPTSPSYSPTSPSYSPTSPSYSPTS 1687

Query: 314  SHNIYSFFSPHNPYSPFNP-YNIDSPFNSDNPDSPFRNYPQYSRYNPKNPE-SPFSPQNE 371
                YS  SP   YSP +P Y+  SP  S  P SP  + P    Y+P +P  SP SP   
Sbjct: 1688 PS--YSPTSP--SYSPTSPSYSPTSPSYS--PTSPSYS-PTSPSYSPTSPSYSPTSPS-- 1738

Query: 372  DSIYNPENPN-SPYNP 386
               Y+P +P+ SP +P
Sbjct: 1739 ---YSPTSPSYSPTSP 1751

>3h0g_A DNA-directed RNA polymerase II subunit RPB1; transcription, multi-protein complex, DNA- binding, magnesium; 3.65A {Schizosaccharomyces pombe} Length = 1752

 Score = 69.7 bits (170), Expect = 3e-12
 Identities = 69/271 (25%), Positives = 97/271 (35%), Gaps = 47/271 (17%)

Query: 139  PYNPSSVFNPKNIDSVFNPRNPDSPYYNQYQFLYSPLSPYNPRSLFSSQNPLSPLSPLNA 198
            PY  S + +   + S        SP              Y      S        SP   
Sbjct: 1485 PYERSPMVDSGFVGS--PDAAAFSPLVQGGSEGREGFGDYGLLGAASPYKG--VQSP-GY 1539

Query: 199  NSPYNPRNQISYYNIENPKSPYNIHNPESPLYSDSPYYYRNLPLYNPVETELIDQYSTSV 258
             SP++      Y       SP   ++P SP YS SP Y  + P Y+P          TS 
Sbjct: 1540 TSPFSSAMSPGY----GLTSP--SYSPSSPGYSTSPAYMPSSPSYSPTSPSY---SPTSP 1590

Query: 259  YNNPDSPLSINSPHSVLNPYNLDSILNPFNVKSPLSPENPASPFNP-YNPEPSIFDSHNI 317
              +P SP      +S  +P             S  SP    SP +P Y+P    +   + 
Sbjct: 1591 SYSPTSP-----SYSPTSPSY-----------SATSPSY--SPTSPSYSPTSPSYSPTSP 1632

Query: 318  YSFFSPHNP-YSPFNP-YNIDSPFNSDNPDSPFRNYPQYS----RYNPKNPE-SPFSPQN 370
               +SP +P YSP +P Y+  SP  S    S     P YS     Y+P +P  SP SP  
Sbjct: 1633 S--YSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPS- 1689

Query: 371  EDSIYNPENPNSPYNPFNENSLYHPGNPDSP 401
                Y+P +P+      + +      +P SP
Sbjct: 1690 ----YSPTSPSYSPTSPSYSPTSPSYSPTSP 1716

>1twf_A B220, DNA-directed RNA polymerase II largest subunit; transcription, mRNA, multiprotein complex; HET: UTP; 2.30A {Saccharomyces cerevisiae} SCOP: e.29.1.2 PDB: 1i3q_A 1i6h_A 1k83_A* 1nik_A 1nt9_A 1pqv_A 1r5u_A 1r9s_A* 1r9t_A* 1sfo_A* 1twa_A* 1twc_A* 1i50_A* 1twg_A* 1twh_A* 1wcm_A 1y1v_A 1y1w_A 1y1y_A 1y77_A* ... Length = 1733

 Score = 61.6 bits (149), Expect = 8e-10
 Identities = 86/331 (25%), Positives = 119/331 (35%), Gaps = 60/331 (18%)

Query: 88   DSLFDNTHPESLLNPYNPESLLSPLNPRSVFYPSNPEVPSFDYNNP-NSPFNPYNPSSVF 146
            D + D       +       +    +     Y +   + + D +      F+P   S   
Sbjct: 1442 DVMIDEESLVKYMPEQKITEIEDGQDGGVTPYSNESGLVNADLDVKDELMFSPLVDSGSN 1501

Query: 147  NPKNIDSVFNPRNPDSPYYNQYQFLYSPLSPYNPRSLFSSQNPLSPLSPLNANSPYNPRN 206
            +       F              F     +P +P    SS    SP SP    SP +P  
Sbjct: 1502 DAMA--GGFTAYGGADYGEATSPFGAYGEAPTSPGFGVSSPGF-SPTSP--TYSPTSP-- 1554

Query: 207  QISYYNIENPKSPYNIHNPESPLYS-DSPYYYRNLPLYNPVETELIDQYSTSVYNNPDSP 265
              +Y     P SP   ++P SP YS  SP Y    P Y+P          TS   +P SP
Sbjct: 1555 --AYS----PTSPS--YSPTSPSYSPTSPSYSPTSPSYSP----------TSPSYSPTSP 1596

Query: 266  LSINSPHSVLNPYNLDSILNPFNVKSPLSPE-NPASP-FNPYNPEPSIFDSHNIYSFFSP 323
                SP S        S        SP SP  +P SP ++P +P  S       YS  SP
Sbjct: 1597 SY--SPTSPSYSPTSPSY-------SPTSPSYSPTSPSYSPTSPSYSPTSPS--YSPTSP 1645

Query: 324  HNPYSPFNP-YNIDSPFNSDNPDSPFRNYPQYS----RYNPKNP-ESPFSPQNEDSIYNP 377
               YSP +P Y+  SP  S    S     P YS     Y+P +P  SP SP      Y+P
Sbjct: 1646 S--YSPTSPSYSPTSPAYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPN-----YSP 1698

Query: 378  E----NPNSP-YNPFNENSLYHPGNPDSPYD 403
                 +P SP Y+P   +  Y P   +  ++
Sbjct: 1699 TSPSYSPTSPGYSP--GSPAYSPKQDEQKHN 1727

>1twf_A B220, DNA-directed RNA polymerase II largest subunit; transcription, mRNA, multiprotein complex; HET: UTP; 2.30A {Saccharomyces cerevisiae} SCOP: e.29.1.2 PDB: 1i3q_A 1i6h_A 1k83_A* 1nik_A 1nt9_A 1pqv_A 1r5u_A 1r9s_A* 1r9t_A* 1sfo_A* 1twa_A* 1twc_A* 1i50_A* 1twg_A* 1twh_A* 1wcm_A 1y1v_A 1y1w_A 1y1y_A 1y77_A* ... Length = 1733

 Score = 58.6 bits (141), Expect = 7e-09
 Identities = 72/253 (28%), Positives = 98/253 (38%), Gaps = 52/253 (20%)

Query: 62   PYSNTDDIYNPFSPINQYSPYSPYNTDSLFDNTHPESLLNPYNPESLLSPLNPRSVFYPS 121
              + T   +   SP   +SP SP  +        P S    Y+P S     +P S  Y  
Sbjct: 1527 GEAPTSPGFGVSSPG--FSPTSPTYS--------PTS--PAYSPTS--PSYSPTSPSY-- 1570

Query: 122  NPEVPSFDYNNPNSPFNPYNPSSVFNPKNIDSVFNPRNPDSPYYNQYQFLYSPLSP-YNP 180
            +P  PS+   +P   ++P +PS               +P SP Y+     YSP SP Y+P
Sbjct: 1571 SPTSPSYSPTSP--SYSPTSPSYSPTS-------PSYSPTSPSYSPTSPSYSPTSPSYSP 1621

Query: 181  RSLFSSQNPLSPLSPLNANSPYNPRNQISYYNIENPKSPYNIHNPESPLYSD-SPYYYRN 239
             S   S +P SP    +  SP       SY    +P SP   ++P SP YS  SP Y   
Sbjct: 1622 TS--PSYSPTSP--SYSPTSPSYSPTSPSY----SPTSPS--YSPTSPAYSPTSPSYSPT 1671

Query: 240  LPLYNPVETELIDQYSTSVYNNPDSPL-SINSPHSVLNPYNLDSILNPFNVKSPLSPE-N 297
             P Y+P          TS   +P SP  S  SP      Y+  S        SP SP  +
Sbjct: 1672 SPSYSPTSP---SYSPTSPSYSPTSPNYSPTSPS-----YSPTSPGY-----SPGSPAYS 1718

Query: 298  PASPFNPYNPEPS 310
            P      +N   +
Sbjct: 1719 PKQDEQKHNENEN 1731

>1twf_A B220, DNA-directed RNA polymerase II largest subunit; transcription, mRNA, multiprotein complex; HET: UTP; 2.30A {Saccharomyces cerevisiae} SCOP: e.29.1.2 PDB: 1i3q_A 1i6h_A 1k83_A* 1nik_A 1nt9_A 1pqv_A 1r5u_A 1r9s_A* 1r9t_A* 1sfo_A* 1twa_A* 1twc_A* 1i50_A* 1twg_A* 1twh_A* 1wcm_A 1y1v_A 1y1w_A 1y1y_A 1y77_A* ... Length = 1733

 Score = 55.9 bits (134), Expect = 4e-08
 Identities = 56/189 (29%), Positives = 77/189 (40%), Gaps = 32/189 (16%)

Query: 63   YSNTDDIYNPFSPINQYSPYSPY--NTDSLFDNTHPESLLNPYNPES-LLSPLNPRSVFY 119
            YS T   Y+P SP   YSP SP    T   +  T P      Y+P S   SP +P   + 
Sbjct: 1570 YSPTSPSYSPTSP--SYSPTSPSYSPTSPSYSPTSPS-----YSPTSPSYSPTSPS--YS 1620

Query: 120  PSNPEVPSFDYNNPNSPFNPYNPSSVFNPKNIDSVFNPRNPDSPYYNQYQFLYSPLSP-Y 178
            P++P      Y+  +  ++P +PS      +        +P SP Y+     YSP SP Y
Sbjct: 1621 PTSPS-----YSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPAYSPTSPSYSPTSPSY 1675

Query: 179  NPRSLFSS--QNPLSPLSPLNANSPYNPRNQISYYNIENPKSPYNIHNPESPLYSDSPYY 236
            +P S   S      SP SP    SP +P           P SP   ++P SP YS     
Sbjct: 1676 SPTSPSYSPTSPSYSPTSP--NYSPTSPSYS--------PTSP--GYSPGSPAYSPKQDE 1723

Query: 237  YRNLPLYNP 245
             ++    N 
Sbjct: 1724 QKHNENENS 1732

>1twf_A B220, DNA-directed RNA polymerase II largest subunit; transcription, mRNA, multiprotein complex; HET: UTP; 2.30A {Saccharomyces cerevisiae} SCOP: e.29.1.2 PDB: 1i3q_A 1i6h_A 1k83_A* 1nik_A 1nt9_A 1pqv_A 1r5u_A 1r9s_A* 1r9t_A* 1sfo_A* 1twa_A* 1twc_A* 1i50_A* 1twg_A* 1twh_A* 1wcm_A 1y1v_A 1y1w_A 1y1y_A 1y77_A* ... Length = 1733

 Score = 51.2 bits (122), Expect = 1e-06
 Identities = 62/281 (22%), Positives = 88/281 (31%), Gaps = 56/281 (19%)

Query: 127  SFD--YNNPNSPFNPYNPSSVFNPKNIDSVFNPRNPDSPYYNQYQFLYSPL--SPYNPRS 182
            +FD   +  +                 D    P + +S   N    +   L  SP     
Sbjct: 1440 AFDVMIDEESLVKYMPEQKITEIEDGQDGGVTPYSNESGLVNADLDVKDELMFSPLVDSG 1499

Query: 183  LFSSQNP-LSPLSPLNANSPYNPRNQISYYNIENPKSPYNIHNPESPLYS-DSPYYYRNL 240
               +     +     +     +P           P SP       SP +S  SP Y    
Sbjct: 1500 SNDAMAGGFTAYGGADYGEATSPFGAYGEA----PTSPG--FGVSSPGFSPTSPTYSPTS 1553

Query: 241  PLYNPVETELIDQYSTSVYNNPDSP-LSINSPHSVLNPYNLDSILNPFNVKSPLSPENPA 299
            P Y+P          TS   +P SP  S  SP                   SP SP    
Sbjct: 1554 PAYSP----------TSPSYSPTSPSYSPTSPSY-----------------SPTSP---- 1582

Query: 300  SPFNPYNPEPSIFDSHNIYSFFSPHNP-YSPFNP-YNIDSPFNSDNPDSPFRNYPQYSRY 357
              ++P +P  S          +SP +P YSP +P Y+  SP  S  P SP    P    Y
Sbjct: 1583 -SYSPTSPSYS-----PTSPSYSPTSPSYSPTSPSYSPTSPSYS--PTSP-SYSPTSPSY 1633

Query: 358  NPKNPESPFSPQNEDSIYNPENPNSPYNPFNENSLYHPGNP 398
            +P +P    +  +        +P SP       S Y P +P
Sbjct: 1634 SPTSPSYSPTSPSYSPTSPSYSPTSPAYSPTSPS-YSPTSP 1673

>1rp0_A ARA6, thiazole biosynthetic enzyme; protein ligand complex, biosynthetic protein; HET: AHZ HTO; 1.60A {Arabidopsis thaliana} SCOP: c.3.1.6 Length = 284

 Score = 49.7 bits (118), Expect = 1e-06
 Identities = 21/77 (27%), Positives = 35/77 (45%), Gaps = 11/77 (14%)

Query: 396 GNPDSPYDWQRLE----KERYNIYRSVI--YPPDMTPYVKSGDCFDIIIVGASAAGCVLA 449
           G   + YD         KE   + R +   Y  DM  Y +     D+++VGA +AG   A
Sbjct: 1   GRGSAGYDLNAFTFDPIKES-IVSREMTRRYMTDMITYAE----TDVVVVGAGSAGLSAA 55

Query: 450 NRLSEVSSLKVLLIEAG 466
             +S+  +++V +IE  
Sbjct: 56  YEISKNPNVQVAIIEQS 72

>1qo8_A Flavocytochrome C3 fumarate reductase; oxidoreductase; HET: HEM FAD; 2.15A {Shewanella frigidimarina} SCOP: a.138.1.3 c.3.1.4 d.168.1.1 Length = 566

 Score = 47.0 bits (112), Expect = 2e-05
 Identities = 12/53 (22%), Positives = 22/53 (41%), Gaps = 2/53 (3%)

Query: 652 VLKRSKVTKVIINDQNVATGVEYVNSKGETVRVTANKEVILTAGAI-ANAQLL 703
               S+V K+++ND +   G            + A K V+L  G    N +++
Sbjct: 267 TRLNSRVVKLVVNDDHSVVGAVVHGKHTGYYMIGA-KSVVLATGGYGMNKEMI 318

>1y0p_A Fumarate reductase flavoprotein subunit; flavocytochrome, mesaconate, oxidoreductase; HET: HEM FAD; 1.50A {Shewanella frigidimarina} SCOP: a.138.1.3 c.3.1.4 d.168.1.1 PDB: 1qjd_A* 2b7s_A* 1jry_A* 2b7r_A* 1ksu_A* 1jrz_A* 1jrx_A* 1m64_A* 1p2h_A* 1p2e_A* 1kss_A* 1e39_A* 1q9i_A* 1lj1_A* Length = 571

 Score = 46.2 bits (110), Expect = 3e-05
 Identities = 12/80 (15%), Positives = 27/80 (33%), Gaps = 8/80 (10%)

Query: 623 LPGMT-RYGLRFSAAD----AYLTPIAG--KRTNLYVLKRSKVTKVIINDQNVATGVEYV 675
           + G +     R +         +  +     + N+ +   ++  +V+ +D+    G+   
Sbjct: 236 MGGASVNRAHRPTGGAGVGAHVVQVLYDNAVKRNIDLRMNTRGIEVLKDDKGTVKGILVK 295

Query: 676 NSKGETVRVTANKEVILTAG 695
                   V A   VIL  G
Sbjct: 296 GMYKGYYWVKA-DAVILATG 314

>1d4d_A Flavocytochrome C fumarate reductase; oxidoreductase; HET: HEM FAD; 2.50A {Shewanella oneidensis} SCOP: a.138.1.3 c.3.1.4 d.168.1.1 PDB: 1d4e_A* 1d4c_A* Length = 572

 Score = 44.7 bits (106), Expect = 8e-05
 Identities = 10/53 (18%), Positives = 21/53 (39%), Gaps = 2/53 (3%)

Query: 652 VLKRSKVTKVIINDQNVATGVEYVNSKGETVRVTANKEVILTAGAI-ANAQLL 703
           +   S+V +++ +     TGV           + A   V++ AG    N + +
Sbjct: 272 IRLNSRVVRILEDASGKVTGVLVKGEYTGYYVIKA-DAVVIAAGGFAKNNERV 323

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 44.8 bits (105), Expect = 1e-04
 Identities = 84/641 (13%), Positives = 171/641 (26%), Gaps = 187/641 (29%)

Query: 142 PSSVFNPKNIDSVFNPRNPDSPYY-----------------------NQYQFLYSPLS-- 176
           P S+ + + ID +   ++  S                            Y+FL SP+   
Sbjct: 42  PKSILSKEEIDHIIMSKDAVSGTLRLFWTLLSKQEEMVQKFVEEVLRINYKFLMSPIKTE 101

Query: 177 ---PYNPRSLFSSQ-NPLSPLSPLNANSPYNPRNQISYYNIENPKSPYNIHNPESPLYSD 232
              P     ++  Q + L      N N  +        YN+   +    +      L   
Sbjct: 102 QRQPSMMTRMYIEQRDRLY-----NDNQVFAK------YNVSRLQPYLKLRQ---ALLEL 147

Query: 233 SPYYYRNLPLYNPV---ETELIDQ--YSTSVYNNPDSP---LSI---NSPHSVLNPY-NL 280
            P   +N+ +   +   +T +      S  V    D     L++   NSP +VL     L
Sbjct: 148 RP--AKNVLIDGVLGSGKTWVALDVCLSYKVQCKMDFKIFWLNLKNCNSPETVLEMLQKL 205

Query: 281 DSILNPFNVKSPLSPENPASPFNPYNPEPSIFDSHNIYSFFSPH------NPYSP--FNP 332
              ++P          N     +    E         Y     +      N  +   +N 
Sbjct: 206 LYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPY----ENCLLVLLNVQNAKAWNA 261

Query: 333 YNIDSPF-----NSDNPDSPFRNYPQYSRYNPKNPESPFSPQNEDSIY----NPENPNSP 383
           +N+              D  F +    +  +  +     +P    S+     +    + P
Sbjct: 262 FNLSCKILLTTRFKQVTD--FLSAATTTHISLDHHSMTLTPDEVKSLLLKYLDCRPQDLP 319

Query: 384 YNPFNENSLYHPGNP-----------DSPYDWQRLEKERYNIYRSVI-------YPPDMT 425
                        NP           D    W   +    +   ++I        P +  
Sbjct: 320 -------REVLTTNPRRLSIIAESIRDGLATWDNWKHVNCDKLTTIIESSLNVLEPAEYR 372

Query: 426 PYVKSGDCF--DIIIVGASAAGCVLANRLSEVSSLKVL-------LIEAGGDTPIHSRIP 476
                   F     I   +    ++   + +   + V+       L+E        S IP
Sbjct: 373 KMFDRLSVFPPSAHI--PTILLSLIWFDVIKSDVMVVVNKLHKYSLVEKQPKESTIS-IP 429

Query: 477 GMSSVLSLSEFDHAYLAEPSQFAGLGVRNARIKITAGKGLGGSSAVQNILYQRGTSYDYE 536
            +            YL    +       +  I +                Y    ++D +
Sbjct: 430 SI------------YLELKVKLENEYALHRSI-VDH--------------YNIPKTFDSD 462

Query: 537 NFAKLGYNGWGYDETLKYFVKSEDYRSVIYNESKAVHG------TQGYLPVGLFKNKENN 590
           +      +         YF     Y  + ++     H          +L     + K   
Sbjct: 463 DLIPPYLDQ--------YF-----YSHIGHHLKNIEHPERMTLFRMVFLDFRFLEQK--- 506

Query: 591 IIREIFETSAQELGYPCPKDMNDRYVDVGFAELPGMTRYGLRFSA-ADAYLTPIAGKRTN 649
            IR           +     + +    + F + P +     ++    +A L  +     N
Sbjct: 507 -IR------HDSTAWNASGSILNTLQQLKFYK-PYICDNDPKYERLVNAILDFLPKIEEN 558

Query: 650 LYVLKRSKVTKVIINDQNVATGVEYVNSKGETVRVTANKEV 690
           L     SK T ++   + +A     + ++ E +   A+K+V
Sbjct: 559 LI---CSKYTDLL---R-IA-----LMAEDEAIFEEAHKQV 587

>2gjc_A Thiazole biosynthetic enzyme, mitochondrial; glutathione reductase type II family, thiazole synthase, mitochondria DNA repair; HET: AHZ; 1.82A {Saccharomyces cerevisiae} SCOP: c.3.1.6 PDB: 3fpz_A* Length = 326

 Score = 44.0 bits (103), Expect = 1e-04
 Identities = 21/89 (23%), Positives = 38/89 (42%), Gaps = 13/89 (14%)

Query: 386 PFNENSLYHP-GNPDSPYDWQRLE----KERYNIYRSVI--YPPDMTPYVKSGDCFDIII 438
             N   + H   +     DW   +    +E   + R++   Y  D+  +       D+II
Sbjct: 16  HLNSTPVTHCLSDIVKKEDWSDFKFAPIRES-TVSRAMTSRYFKDLDKFAV----SDVII 70

Query: 439 VGASAAGCVLANRLSEVS-SLKVLLIEAG 466
           VGA ++G   A  +++    LKV +IE+ 
Sbjct: 71  VGAGSSGLSAAYVIAKNRPDLKVCIIESS 99

>3jsk_A Cypbp37 protein; octameric thiazole synthase, biosynthetic protein; HET: AHZ; 2.70A {Neurospora crassa} Length = 344

 Score = 42.1 bits (98), Expect = 5e-04
 Identities = 24/116 (20%), Positives = 40/116 (34%), Gaps = 13/116 (11%)

Query: 359 PKNPESPFSPQNEDSIYNPENPNSPYNPFNENSLYHP-GNPDSPYDWQRLE----KERYN 413
           P   E    P   +        N      +   L  P                  +E   
Sbjct: 3   PSVLEPQSVPTLVNVGLKAVGRNDAPVERDARGLSKPLLELMPTLGTDAFTFSPIRES-T 61

Query: 414 IYRSVI--YPPDMTPYVKSGDCFDIIIVGASAAGCVLANRLSEVS-SLKVLLIEAG 466
           + R++   Y  D+  + +     DI+IVGA + G   A  LS +   L++ ++EAG
Sbjct: 62  VSRAMTRRYFADLDAHAE----TDIVIVGAGSCGLSAAYVLSTLRPDLRITIVEAG 113

>4at0_A 3-ketosteroid-delta4-5alpha-dehydrogenase; oxidoreductase, dehydogenase, steroid catabolism; HET: FAD; 1.60A {Rhodococcus jostii} PDB: 4at2_A* Length = 510

 Score = 42.3 bits (100), Expect = 5e-04
 Identities = 11/53 (20%), Positives = 23/53 (43%), Gaps = 2/53 (3%)

Query: 652 VLKRSKVTKVIINDQNVATGVEYVNSKGETVRVTANKEVILTAGAI-ANAQLL 703
                +V  ++ +D     G+      G+ V V A + V+L  G+   N +++
Sbjct: 219 AEYDMRVQTLVTDDTGRVVGIVAKQ-YGKEVAVRARRGVVLATGSFAYNDKMI 270

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	720
3fim_B	566	ARYL-alcohol oxidase; AAO, lignin degradation, oxi	100.0
3qvp_A	583	Glucose oxidase; oxidoreductase; HET: NAG BMA MAN	100.0
3t37_A	526	Probable dehydrogenase; BET alpha beta fold, ADP b	100.0
1gpe_A	587	Protein (glucose oxidase); oxidoreductase(flavopro	100.0
3q9t_A	577	Choline dehydrogenase and related flavoproteins; g	100.0
2jbv_A	546	Choline oxidase; alcohol oxidation, flavoenyzme ox	100.0
1ju2_A	536	HydroxynitrIle lyase; flavin, GMC oxidoreductase,	99.94
1coy_A	507	Cholesterol oxidase; oxidoreductase(oxygen recepto	99.94
1n4w_A	504	CHOD, cholesterol oxidase; flavoenzyme, steroid me	99.94
1kdg_A	546	CDH, cellobiose dehydrogenase; GMC oxidoreductase,	99.92
3pl8_A	623	Pyranose 2-oxidase; substrate complex, H167A mutan	99.64
4at0_A	510	3-ketosteroid-delta4-5alpha-dehydrogenase; oxidore	99.64
3dme_A	369	Conserved exported protein; structural genomics, P	99.59
3nyc_A	381	D-arginine dehydrogenase; FAD, imino-arginine, oxi	99.57
1y56_B	382	Sarcosine oxidase; dehydrogenase, protein-protein	99.55
2gag_B	405	Heterotetrameric sarcosine oxidase beta-subunit; f	99.54
1qo8_A	566	Flavocytochrome C3 fumarate reductase; oxidoreduct	99.49
3dje_A	438	Fructosyl amine: oxygen oxidoreductase; fructosyl-	99.49
1y0p_A	571	Fumarate reductase flavoprotein subunit; flavocyto	99.49
2oln_A	397	NIKD protein; flavoprotein, rossmann fold, oxidore	99.46
2gf3_A	389	MSOX, monomeric sarcosine oxidase; flavoprotein ox	99.45
3axb_A	448	Putative oxidoreductase; dinucleotide-binding fold	99.45
4dgk_A	501	Phytoene dehydrogenase; the FAD/NAD(P)-binding ros	99.44
3da1_A	561	Glycerol-3-phosphate dehydrogenase; NESG BHR167 Q9	99.44
2rgh_A	571	Alpha-glycerophosphate oxidase; flavoprotein oxida	99.43
1pj5_A	830	N,N-dimethylglycine oxidase; channelling, FAD bind	99.42
2bs2_A	660	Quinol-fumarate reductase flavoprotein subunit A;	99.4
2h88_A	621	Succinate dehydrogenase flavoprotein subunit; comp	99.4
2wdq_A	588	Succinate dehydrogenase flavoprotein subunit; succ	99.4
2uzz_A	372	N-methyl-L-tryptophan oxidase; N-methyltryptophan	99.38
1d4d_A	572	Flavocytochrome C fumarate reductase; oxidoreducta	99.37
1ryi_A	382	Glycine oxidase; flavoprotein, protein-inhibitor c	99.34
3ps9_A	676	TRNA 5-methylaminomethyl-2-thiouridine biosynthes	99.34
2qcu_A	501	Aerobic glycerol-3-phosphate dehydrogenase; glycer	99.33
2i0z_A	447	NAD(FAD)-utilizing dehydrogenases; structural geno	99.32
1jnr_A	643	Adenylylsulfate reductase; oxidoreductase; HET: FA	99.32
1kf6_A	602	Fumarate reductase flavoprotein; respiration, fuma	99.3
3gyx_A	662	Adenylylsulfate reductase; oxidoreductase; HET: FA	99.3
3pvc_A	689	TRNA 5-methylaminomethyl-2-thiouridine biosynthes	99.3
3oz2_A	397	Digeranylgeranylglycerophospholipid reductase; str	99.29
1chu_A	540	Protein (L-aspartate oxidase); flavoenzyme, NAD bi	99.28
1twf_A	1733	B220, DNA-directed RNA polymerase II largest subun	99.26
3ka7_A	425	Oxidoreductase; structural genomics, PSI-2, protei	99.25
3cgv_A	397	Geranylgeranyl reductase related protein; NP_39399	99.24
3v76_A	417	Flavoprotein; structural genomics, PSI-biology, NE	99.18
1rp0_A	284	ARA6, thiazole biosynthetic enzyme; protein ligand	99.17
3nlc_A	549	Uncharacterized protein VP0956; FAD-binding protei	99.17
2e5v_A	472	L-aspartate oxidase; archaea, oxidoreductase; HET:	99.13
3nix_A	421	Flavoprotein/dehydrogenase; structural genomics, P	99.13
3nrn_A	421	Uncharacterized protein PF1083; alpha-beta protein	99.12
3e1t_A	512	Halogenase; flavoprotein; HET: FAD; 2.05A {Chondro	99.11
3p1w_A	475	Rabgdi protein; GDI RAB, malaria, structural genom	99.08
3c4n_A	405	Uncharacterized protein DR_0571; alpha-beta protei	99.07
2gqf_A	401	Hypothetical protein HI0933; structural genomics,	99.06
3i3l_A	591	Alkylhalidase CMLS; flavin-dependent halogenase, c	99.06
2bcg_G	453	Secretory pathway GDP dissociation inhibitor; RABG	99.04
3jsk_A	344	Cypbp37 protein; octameric thiazole synthase, bios	99.01
2gmh_A	584	Electron transfer flavoprotein-ubiquinone oxidored	99.0
3atr_A	453	Conserved archaeal protein; saturating double bond	99.0
3ihg_A	535	RDME; flavoenzyme, anthracycline, polyketide biosy	98.96
3lxd_A	415	FAD-dependent pyridine nucleotide-disulphide oxido	98.95
3fmw_A	570	Oxygenase; mithramycin, baeyer-villiger, flavin bi	98.93
4gde_A	513	UDP-galactopyranose mutase; flavin adenine dinucle	98.93
3itj_A	338	Thioredoxin reductase 1; disulfide B flavoprotein,	98.92
2x3n_A	399	Probable FAD-dependent monooxygenase; oxidoreducta	98.92
3k7m_X	431	6-hydroxy-L-nicotine oxidase; enantiomeric substra	98.92
3i6d_A	470	Protoporphyrinogen oxidase; protein-inhibitor comp	98.9
2gjc_A	326	Thiazole biosynthetic enzyme, mitochondrial; gluta	98.89
3kkj_A	336	Amine oxidase, flavin-containing; oxidoreductase,	98.87
3f8d_A	323	Thioredoxin reductase (TRXB-3); redox protein, nuc	98.87
3fg2_P	404	Putative rubredoxin reductase; ferredoxin reductas	98.87
2cul_A	232	Glucose-inhibited division protein A-related PROT	98.86
1d5t_A	433	Guanine nucleotide dissociation inhibitor; ultra-h	98.85
3qj4_A	342	Renalase; FAD/NAD(P)-binding rossmann fold superfa	98.82
4a9w_A	357	Monooxygenase; baeyer-villiger, FAD, oxidoreductas	98.82
1yvv_A	336	Amine oxidase, flavin-containing; oxidoreductase,	98.82
2qa1_A	500	PGAE, polyketide oxygenase PGAE; FAD, angucycline,	98.82
2zxi_A	637	TRNA uridine 5-carboxymethylaminomethyl modificat	98.82
3rp8_A	407	Flavoprotein monooxygenase; FAD-binding protein, o	98.81
3nks_A	477	Protoporphyrinogen oxidase; FAD containing protein	98.81
1k0i_A	394	P-hydroxybenzoate hydroxylase; PHBH, FAD, P-OHB, h	98.81
3g3e_A	351	D-amino-acid oxidase; FAD, flavoprotein, oxidoredu	98.8
3ces_A	651	MNMG, tRNA uridine 5-carboxymethylaminomethyl modi	98.8
3lov_A	475	Protoporphyrinogen oxidase; structural genomics, J	98.78
1mo9_A	523	ORF3; nucleotide binding motifs, nucleotide bindin	98.78
2ivd_A	478	PPO, PPOX, protoporphyrinogen oxidase; porphyrin b	98.78
3o0h_A	484	Glutathione reductase; ssgcid, structur genomics,	98.78
2qa2_A	499	CABE, polyketide oxygenase CABE; FAD, angucycline,	98.77
2weu_A	511	Tryptophan 5-halogenase; regioselectivity, antifun	98.73
2bry_A	497	NEDD9 interacting protein with calponin homology a	98.72
3r9u_A	315	Thioredoxin reductase; structural genomics, center	98.72
3cp8_A	641	TRNA uridine 5-carboxymethylaminomethyl modificati	98.72
1s3e_A	520	Amine oxidase [flavin-containing] B; human monoami	98.7
2vvm_A	495	Monoamine oxidase N; FAD, peroxisome, flavoprotein	98.7
3ab1_A	360	Ferredoxin--NADP reductase; oxidoreductase, electr	98.7
2aqj_A	538	Tryptophan halogenase, pRNA; flavin-dependent halo	98.69
3urh_A	491	Dihydrolipoyl dehydrogenase; PSI-biology, structur	98.69
3lad_A	476	Dihydrolipoamide dehydrogenase; oxidoreductase; HE	98.67
2vou_A	397	2,6-dihydroxypyridine hydroxylase; oxidoreductase,	98.67
3alj_A	379	2-methyl-3-hydroxypyridine-5-carboxylic acid OXYG;	98.67
4dna_A	463	Probable glutathione reductase; structural genomic	98.67
1trb_A	320	Thioredoxin reductase; oxidoreductase(flavoenzyme)	98.66
1q1r_A	431	Putidaredoxin reductase; glutathione reductase fol	98.65
2r0c_A	549	REBC; flavin adenine dinucleotide, monooxygenase,	98.65
2e4g_A	550	Tryptophan halogenase; flavin-binding, rebeccamyci	98.64
2dkh_A	639	3-hydroxybenzoate hydroxylase; flavoprotein, monoo	98.64
3dgh_A	483	TRXR-1, thioredoxin reductase 1, mitochondrial; ox	98.63
3c96_A	410	Flavin-containing monooxygenase; FAD, oxidoreducta	98.62
3s5w_A	463	L-ornithine 5-monooxygenase; class B flavin depend	98.62
2pyx_A	526	Tryptophan halogenase; structural genomics, JOI fo	98.61
4gut_A	776	Lysine-specific histone demethylase 1B; histone de	98.6
3iwa_A	472	FAD-dependent pyridine nucleotide-disulphide oxido	98.6
3k30_A	690	Histamine dehydrogenase; 6-S-cysteinyl-FMN, ADP bi	98.58
3dgz_A	488	Thioredoxin reductase 2; oxidoreductase, rossmann,	98.56
3lzw_A	332	Ferredoxin--NADP reductase 2; ferredoxin reductase	98.55
3hyw_A	430	Sulfide-quinone reductase; monotopic membrane prot	98.55
3h8l_A	409	NADH oxidase; membrane protein, complete form, ros	98.54
3h28_A	430	Sulfide-quinone reductase; monotopic membrane prot	98.53
3ef6_A	410	Toluene 1,2-dioxygenase system ferredoxin--NAD(+)	98.52
4hb9_A	412	Similarities with probable monooxygenase; flavin,	98.51
3ic9_A	492	Dihydrolipoamide dehydrogenase; APC62701, colwelli	98.49
1m6i_A	493	Programmed cell death protein 8; apoptosis, AIF, o	98.48
2gv8_A	447	Monooxygenase; FMO, FAD, NADPH, cofactor complex,	98.47
3gwf_A	540	Cyclohexanone monooxygenase; flavoprotein biocatal	98.45
4ap3_A	549	Steroid monooxygenase; oxidoreductase, baeyer-vill	98.44
3l8k_A	466	Dihydrolipoyl dehydrogenase; redox-active center,	98.44
4fk1_A	304	Putative thioredoxin reductase; structural genomic	98.44
3uox_A	545	Otemo; baeyer-villiger monooxygenase, oxidoreducta	98.44
1pn0_A	665	Phenol 2-monooxygenase; two dimers, TLS refinement	98.41
2xve_A	464	Flavin-containing monooxygenase; oxidoreductase; H	98.41
4gcm_A	312	TRXR, thioredoxin reductase; FAD/NAD-linked reduct	98.41
3qfa_A	519	Thioredoxin reductase 1, cytoplasmic; protein-prot	98.4
2v3a_A	384	Rubredoxin reductase; alkane degradation, NADH oxi	98.37
3fpz_A	326	Thiazole biosynthetic enzyme; FAD, mitochondrion,	98.35
3vrd_B	401	FCCB subunit, flavocytochrome C flavin subunit; su	98.33
2cdu_A	452	NADPH oxidase; flavoenzyme, oxidoreductase; HET: F	98.32
3oc4_A	452	Oxidoreductase, pyridine nucleotide-disulfide FAM;	98.31
2gqw_A	408	Ferredoxin reductase; flavoprotein, oxidoreductase	98.29
1vg0_A	650	RAB proteins geranylgeranyltransferase component A	98.29
4a5l_A	314	Thioredoxin reductase; oxidoreductase, redox metab	98.29
3ics_A	588	Coenzyme A-disulfide reductase; pyridine nucleotid	98.29
1c0p_A	363	D-amino acid oxidase; alpha-beta-alpha motif, flav	98.28
3kd9_A	449	Coenzyme A disulfide reductase; PSI-II, NYSGXRC, o	98.28
4b1b_A	542	TRXR, thioredoxin reductase; oxidoreductase, FAD,	98.27
1gte_A	1025	Dihydropyrimidine dehydrogenase; electron transfer	98.22
3cgb_A	480	Pyridine nucleotide-disulfide oxidoreductase, CLA;	98.21
3ntd_A	565	FAD-dependent pyridine nucleotide-disulphide oxido	98.2
1rsg_A	516	FMS1 protein; FAD binding motif, oxidoreductase; H	98.19
2b9w_A	424	Putative aminooxidase; isomerase, conjugated linol	98.18
2yg5_A	453	Putrescine oxidase; oxidoreductase, flavin; HET: F	98.15
2jae_A	489	L-amino acid oxidase; oxidoreductase, dimerisation	98.13
1v0j_A	399	UDP-galactopyranose mutase; flavoprotein, isomeras	98.12
1i8t_A	367	UDP-galactopyranose mutase; rossman fold, FAD, con	98.08
2xdo_A	398	TETX2 protein; tetracycline degradation, tigecycli	98.05
3hdq_A	397	UDP-galactopyranose mutase; substrate and inhibito	98.05
4b63_A	501	L-ornithine N5 monooxygenase; oxidoreductase, side	98.03
1sez_A	504	Protoporphyrinogen oxidase, mitochondrial; FAD-bin	98.03
3fbs_A	297	Oxidoreductase; structural genomics, PSI2, MCSG, p	98.02
2e1m_A	376	L-glutamate oxidase; L-amino acid oxidase, FAD, L-	97.97
2bi7_A	384	UDP-galactopyranose mutase; FAD, flavoprotein, iso	97.96
2zbw_A	335	Thioredoxin reductase; redox protein, oxidoreducta	97.96
3cty_A	319	Thioredoxin reductase; FAD, oxidoreductase, flavin	97.96
3ihm_A	430	Styrene monooxygenase A; rossman fold, anti-parall	97.94
3d1c_A	369	Flavin-containing putative monooxygenase; NP_37310	97.93
2iid_A	498	L-amino-acid oxidase; flavoenzyme, FAD binding dom	97.91
2q7v_A	325	Thioredoxin reductase; rossman fold, FAD, flavopro	97.89
3dk9_A	478	Grase, GR, glutathione reductase; flavoenzyme, nic	97.87
2ywl_A	180	Thioredoxin reductase related protein; uncharacter	97.86
4dsg_A	484	UDP-galactopyranose mutase; rossmann fold, flavin	97.84
2q0l_A	311	TRXR, thioredoxin reductase; bacterial thiredoxin	97.84
2qae_A	468	Lipoamide, dihydrolipoyl dehydrogenase; FAD-cystin	97.83
1vdc_A	333	NTR, NADPH dependent thioredoxin reductase; hypoth	97.82
1dxl_A	470	Dihydrolipoamide dehydrogenase; oxidoreductase, mu	97.82
2a8x_A	464	Dihydrolipoyl dehydrogenase, E3 component of alpha	97.82
1b37_A	472	Protein (polyamine oxidase); flavin-dependent amin	97.79
1w4x_A	542	Phenylacetone monooxygenase; baeyer-villiger, FAD;	97.79
1fl2_A	310	Alkyl hydroperoxide reductase subunit F; reactive	97.79
2hqm_A	479	GR, grase, glutathione reductase; glutathione redu	97.78
2yqu_A	455	2-oxoglutarate dehydrogenase E3 component; lipoami	97.77
1onf_A	500	GR, grase, glutathione reductase; oxidoreductase;	97.77
2a87_A	335	TRXR, TR, thioredoxin reductase; FAD, NAP, NMA, TL	97.76
1zmd_A	474	Dihydrolipoyl dehydrogenase; lipoamide dehydrogena	97.76
1v59_A	478	Dihydrolipoamide dehydrogenase; 2-oxoacid dehydrog	97.75
1ojt_A	482	Surface protein; redox-active center, glycolysis,	97.75
1zk7_A	467	HGII, reductase, mercuric reductase; mercuric ION	97.73
1ebd_A	455	E3BD, dihydrolipoamide dehydrogenase; redox-active	97.72
1ges_A	450	Glutathione reductase; oxidoreductase(flavoenzyme)	97.72
2r9z_A	463	Glutathione amide reductase; NAD, FAD, substrate s	97.71
3c4a_A	381	Probable tryptophan hydroxylase VIOD; alpha-beta p	97.71
1fec_A	490	Trypanothione reductase; redox-active center, oxid	97.69
2vdc_G	456	Glutamate synthase [NADPH] small chain; oxidoreduc	97.68
1lvl_A	458	Dihydrolipoamide dehydrogenase; oxidoreductase; HE	97.67
2eq6_A	464	Pyruvate dehydrogenase complex, dihydrolipoamide d	97.66
3cty_A	319	Thioredoxin reductase; FAD, oxidoreductase, flavin	97.61
3g5s_A	443	Methylenetetrahydrofolate--tRNA-(uracil-5-)- methy	97.6
2x8g_A	598	Thioredoxin glutathione reductase; redox-active ce	97.55
2z3y_A	662	Lysine-specific histone demethylase 1; chromatin,	97.54
2wpf_A	495	Trypanothione reductase; oxidoreductase, trypanoso	97.53
2eq6_A	464	Pyruvate dehydrogenase complex, dihydrolipoamide d	97.52
1xdi_A	499	RV3303C-LPDA; reductase, FAD, NAD, NADP, unkno fun	97.52
1hyu_A	521	AHPF, alkyl hydroperoxide reductase subunit F; thi	97.49
1fl2_A	310	Alkyl hydroperoxide reductase subunit F; reactive	97.47
2bc0_A	490	NADH oxidase; flavoprotein, pyridine nucleotide di	97.46
1v59_A	478	Dihydrolipoamide dehydrogenase; 2-oxoacid dehydrog	97.45
1o94_A	729	Tmadh, trimethylamine dehydrogenase; electron tran	97.45
2xag_A	852	Lysine-specific histone demethylase 1; amine oxida	97.44
2q0l_A	311	TRXR, thioredoxin reductase; bacterial thiredoxin	97.44
1ps9_A	671	2,4-dienoyl-COA reductase; iron-sulfur, TIM barrel	97.42
3h0g_A	1752	DNA-directed RNA polymerase II subunit RPB1; trans	97.4
1xhc_A	367	NADH oxidase /nitrite reductase; southe collaborat	97.35
2zbw_A	335	Thioredoxin reductase; redox protein, oxidoreducta	97.34
1vdc_A	333	NTR, NADPH dependent thioredoxin reductase; hypoth	97.33
2gag_A	965	Heterotetrameric sarcosine oxidase alpha-subunit;	97.32
1ebd_A	455	E3BD, dihydrolipoamide dehydrogenase; redox-active	97.31
1zmd_A	474	Dihydrolipoyl dehydrogenase; lipoamide dehydrogena	97.3
3s5w_A	463	L-ornithine 5-monooxygenase; class B flavin depend	97.29
2hqm_A	479	GR, grase, glutathione reductase; glutathione redu	97.28
1ges_A	450	Glutathione reductase; oxidoreductase(flavoenzyme)	97.27
2yqu_A	455	2-oxoglutarate dehydrogenase E3 component; lipoami	97.26
1y56_A	493	Hypothetical protein PH1363; dehydrogenase, protei	97.24
1nhp_A	447	NADH peroxidase; oxidoreductase (H2O2(A)); HET: FA	97.23
3sx6_A	437	Sulfide-quinone reductase, putative; sulfide:quino	97.2
2a8x_A	464	Dihydrolipoyl dehydrogenase, E3 component of alpha	97.2
2qae_A	468	Lipoamide, dihydrolipoyl dehydrogenase; FAD-cystin	97.19
1hyu_A	521	AHPF, alkyl hydroperoxide reductase subunit F; thi	97.19
2q7v_A	325	Thioredoxin reductase; rossman fold, FAD, flavopro	97.18
2r9z_A	463	Glutathione amide reductase; NAD, FAD, substrate s	97.17
1dxl_A	470	Dihydrolipoamide dehydrogenase; oxidoreductase, mu	97.12
1onf_A	500	GR, grase, glutathione reductase; oxidoreductase;	97.06
1xdi_A	499	RV3303C-LPDA; reductase, FAD, NAD, NADP, unkno fun	97.06
1cjc_A	460	Protein (adrenodoxin reductase); flavoenzyme, MAD	97.05
1ojt_A	482	Surface protein; redox-active center, glycolysis,	97.04
1lqt_A	456	FPRA; NADP+ derivative, oxidoreductase, structural	96.99
3lzw_A	332	Ferredoxin--NADP reductase 2; ferredoxin reductase	96.99
3ayj_A	721	Pro-enzyme of L-phenylalanine oxidase; amino acid	96.96
3dk9_A	478	Grase, GR, glutathione reductase; flavoenzyme, nic	96.93
4eqs_A	437	Coenzyme A disulfide reductase; oxidoreductase; HE	96.8
1zk7_A	467	HGII, reductase, mercuric reductase; mercuric ION	96.78
2wpf_A	495	Trypanothione reductase; oxidoreductase, trypanoso	96.74
4eqs_A	437	Coenzyme A disulfide reductase; oxidoreductase; HE	96.73
1fec_A	490	Trypanothione reductase; redox-active center, oxid	96.72
3klj_A	385	NAD(FAD)-dependent dehydrogenase, NIRB-family (N-	96.63
4g6h_A	502	Rotenone-insensitive NADH-ubiquinone oxidoreducta	96.55
3qfa_A	519	Thioredoxin reductase 1, cytoplasmic; protein-prot	96.31
1cjc_A	460	Protein (adrenodoxin reductase); flavoenzyme, MAD	95.79
4g6h_A	502	Rotenone-insensitive NADH-ubiquinone oxidoreducta	95.68
2gag_A	965	Heterotetrameric sarcosine oxidase alpha-subunit;	95.55
1nhp_A	447	NADH peroxidase; oxidoreductase (H2O2(A)); HET: FA	95.27
1lss_A	140	TRK system potassium uptake protein TRKA homolog;	95.08
3klj_A	385	NAD(FAD)-dependent dehydrogenase, NIRB-family (N-	95.07
3llv_A	141	Exopolyphosphatase-related protein; NAD(P)-binding	95.02
4gcm_A	312	TRXR, thioredoxin reductase; FAD/NAD-linked reduct	94.96
2g1u_A	155	Hypothetical protein TM1088A; structural genomics,	94.9
3fwz_A	140	Inner membrane protein YBAL; TRKA-N domain, E.coli	94.87
1lvl_A	458	Dihydrolipoamide dehydrogenase; oxidoreductase; HE	94.6
3ic5_A	118	Putative saccharopine dehydrogenase; structural ge	94.56
4a5l_A	314	Thioredoxin reductase; oxidoreductase, redox metab	94.42
2v3a_A	384	Rubredoxin reductase; alkane degradation, NADH oxi	94.32
1xhc_A	367	NADH oxidase /nitrite reductase; southe collaborat	94.27
2hmt_A	144	YUAA protein; RCK, KTN, KTR, KTRA, ktrab, membrane	94.21
1id1_A	153	Putative potassium channel protein; RCK domain, E.	94.16
2gqw_A	408	Ferredoxin reductase; flavoprotein, oxidoreductase	93.62
3d1c_A	369	Flavin-containing putative monooxygenase; NP_37310	93.52
3cgb_A	480	Pyridine nucleotide-disulfide oxidoreductase, CLA;	93.51
3ado_A	319	Lambda-crystallin; L-gulonate 3-dehydrogenase, str	93.35
2bc0_A	490	NADH oxidase; flavoprotein, pyridine nucleotide di	93.24
1f0y_A	302	HCDH, L-3-hydroxyacyl-COA dehydrogenase; abortive	93.1
3l4b_C	218	TRKA K+ channel protien TM1088B; potassium channel	93.05
1q1r_A	431	Putidaredoxin reductase; glutathione reductase fol	92.88
3ic9_A	492	Dihydrolipoamide dehydrogenase; APC62701, colwelli	92.87
3kd9_A	449	Coenzyme A disulfide reductase; PSI-II, NYSGXRC, o	92.8
4e12_A	283	Diketoreductase; oxidoreductase, NADH; HET: 1PE; 1	92.73
3ef6_A	410	Toluene 1,2-dioxygenase system ferredoxin--NAD(+)	92.71
1ks9_A	291	KPA reductase;, 2-dehydropantoate 2-reductase; PAN	92.65
3i83_A	320	2-dehydropantoate 2-reductase; structural genomics	92.59
2gv8_A	447	Monooxygenase; FMO, FAD, NADPH, cofactor complex,	92.42
2cdu_A	452	NADPH oxidase; flavoenzyme, oxidoreductase; HET: F	92.31
1trb_A	320	Thioredoxin reductase; oxidoreductase(flavoenzyme)	92.15
3hn2_A	312	2-dehydropantoate 2-reductase; PSI-2, NYSGXRC, str	92.14
2ew2_A	316	2-dehydropantoate 2-reductase, putative; alpha-str	92.04
3urh_A	491	Dihydrolipoyl dehydrogenase; PSI-biology, structur	91.99
3ghy_A	335	Ketopantoate reductase protein; oxidoreductase, NA	91.89
3ntd_A	565	FAD-dependent pyridine nucleotide-disulphide oxido	91.88
3c85_A	183	Putative glutathione-regulated potassium-efflux S	91.88
2a87_A	335	TRXR, TR, thioredoxin reductase; FAD, NAP, NMA, TL	91.86
2x8g_A	598	Thioredoxin glutathione reductase; redox-active ce	91.86
2xve_A	464	Flavin-containing monooxygenase; oxidoreductase; H	91.83
3fg2_P	404	Putative rubredoxin reductase; ferredoxin reductas	91.81
3itj_A	338	Thioredoxin reductase 1; disulfide B flavoprotein,	91.75
1jw9_B	249	Molybdopterin biosynthesis MOEB protein; MOEB: mod	91.74
3gwf_A	540	Cyclohexanone monooxygenase; flavoprotein biocatal	91.72
3lxd_A	415	FAD-dependent pyridine nucleotide-disulphide oxido	91.71
2y0c_A	478	BCEC, UDP-glucose dehydrogenase; oxidoreductase, c	91.7
2raf_A	209	Putative dinucleotide-binding oxidoreductase; NP_7	91.65
3g17_A	294	Similar to 2-dehydropantoate 2-reductase; structur	91.61
2dpo_A	319	L-gulonate 3-dehydrogenase; structural genomics, N	91.51
4ap3_A	549	Steroid monooxygenase; oxidoreductase, baeyer-vill	91.51
1lld_A	319	L-lactate dehydrogenase; oxidoreductase(CHOH (D)-N	91.41
3dfz_A	223	SIRC, precorrin-2 dehydrogenase; NAD dehydrogenase	91.38
3uox_A	545	Otemo; baeyer-villiger monooxygenase, oxidoreducta	91.38
3l8k_A	466	Dihydrolipoyl dehydrogenase; redox-active center,	91.33
3f8d_A	323	Thioredoxin reductase (TRXB-3); redox protein, nuc	91.11
3oc4_A	452	Oxidoreductase, pyridine nucleotide-disulfide FAM;	91.08
3ab1_A	360	Ferredoxin--NADP reductase; oxidoreductase, electr	91.05
1kyq_A	274	Met8P, siroheme biosynthesis protein Met8; homodim	91.04
1txg_A	335	Glycerol-3-phosphate dehydrogenase [NAD(P)+]; oxid	90.99
4a7p_A	446	UDP-glucose dehydrogenase; oxidoreductase, carbohy	90.94
3gg2_A	450	Sugar dehydrogenase, UDP-glucose/GDP-mannose dehyd	90.74
1bg6_A	359	N-(1-D-carboxylethyl)-L-norvaline dehydrogenase; L	90.65
3lad_A	476	Dihydrolipoamide dehydrogenase; oxidoreductase; HE	90.63
1zcj_A	463	Peroxisomal bifunctional enzyme; peroxisomal multi	90.57
3ics_A	588	Coenzyme A-disulfide reductase; pyridine nucleotid	90.5
1mo9_A	523	ORF3; nucleotide binding motifs, nucleotide bindin	90.38
1mv8_A	436	GMD, GDP-mannose 6-dehydrogenase; rossman fold, do	90.35
3dgz_A	488	Thioredoxin reductase 2; oxidoreductase, rossmann,	90.19
3k6j_A	460	Protein F01G10.3, confirmed by transcript evidenc;	90.16
3r9u_A	315	Thioredoxin reductase; structural genomics, center	90.12
1z82_A	335	Glycerol-3-phosphate dehydrogenase; TM0378, struct	90.07
3lk7_A	451	UDP-N-acetylmuramoylalanine--D-glutamate ligase; a	89.99
3ego_A	307	Probable 2-dehydropantoate 2-reductase; structural	89.92
2x5o_A	439	UDP-N-acetylmuramoylalanine--D-glutamate ligase; A	89.87
1nyt_A	271	Shikimate 5-dehydrogenase; alpha/beta domains, WID	89.83
2vdc_G	456	Glutamate synthase [NADPH] small chain; oxidoreduc	89.77
3hwr_A	318	2-dehydropantoate 2-reductase; YP_299159.1, PANE/A	89.69
1jay_A	212	Coenzyme F420H2:NADP+ oxidoreductase (FNO); rossma	89.58
1zej_A	293	HBD-9, 3-hydroxyacyl-COA dehydrogenase; structural	89.57
3vtf_A	444	UDP-glucose 6-dehydrogenase; two discrete alpha/be	89.57
4gwq_H	35	DNA-directed RNA polymerase II subunit RPB1; bindi	89.52
2ewd_A	317	Lactate dehydrogenase,; protein-substrate_cofactor	89.49
2a9f_A	398	Putative malic enzyme ((S)-malate:NAD+ oxidoreduct	89.46
4b1b_A	542	TRXR, thioredoxin reductase; oxidoreductase, FAD,	89.43
3k96_A	356	Glycerol-3-phosphate dehydrogenase [NAD(P)+]; GPSA	89.4
4dio_A	405	NAD(P) transhydrogenase subunit alpha PART 1; stru	89.4
3oj0_A	144	Glutr, glutamyl-tRNA reductase; structural genomic	89.34
3pef_A	287	6-phosphogluconate dehydrogenase, NAD-binding; gam	89.32
1pzg_A	331	LDH, lactate dehydrogenase; apicomplexa, APAD, tet	89.29
2vns_A	215	Metalloreductase steap3; metal-binding, transmembr	89.26
3dtt_A	245	NADP oxidoreductase; structural genomics, joint ce	89.16
3o0h_A	484	Glutathione reductase; ssgcid, structur genomics,	89.1
1vl6_A	388	Malate oxidoreductase; TM0542, NAD-dependent malic	89.07
2v6b_A	304	L-LDH, L-lactate dehydrogenase; oxidoreductase, ra	89.07
3l9w_A	413	Glutathione-regulated potassium-efflux system Pro	89.02
3doj_A	310	AT3G25530, dehydrogenase-like protein; gamma-hydro	88.98
3g0o_A	303	3-hydroxyisobutyrate dehydrogenase; NAD(P), valine	88.95
1evy_A	366	Glycerol-3-phosphate dehydrogenase; rossmann fold,	88.93
2hjr_A	328	Malate dehydrogenase; malaria, structural genomics	88.88
3mog_A	483	Probable 3-hydroxybutyryl-COA dehydrogenase; struc	88.83
4a9w_A	357	Monooxygenase; baeyer-villiger, FAD, oxidoreductas	88.79
3p2y_A	381	Alanine dehydrogenase/pyridine nucleotide transhy;	88.65
4huj_A	220	Uncharacterized protein; PSI-biology, nysgrc, stru	88.65
3fbs_A	297	Oxidoreductase; structural genomics, PSI2, MCSG, p	88.61
3dgh_A	483	TRXR-1, thioredoxin reductase 1, mitochondrial; ox	88.55
3ew7_A	221	LMO0794 protein; Q8Y8U8_lismo, putative NAD-depend	88.48
4dna_A	463	Probable glutathione reductase; structural genomic	88.47
3pdu_A	287	3-hydroxyisobutyrate dehydrogenase family protein;	88.41
3qha_A	296	Putative oxidoreductase; seattle structural genomi	88.27
2eez_A	369	Alanine dehydrogenase; TTHA0216, structural genomi	88.2
4g65_A	461	TRK system potassium uptake protein TRKA; structur	88.12
3h2s_A	224	Putative NADH-flavin reductase; Q03B84, NESG, LCR1	88.12
2h78_A	302	Hibadh, 3-hydroxyisobutyrate dehydrogenase; APC601	88.09
1yqg_A	263	Pyrroline-5-carboxylate reductase; structural geno	88.08
2f1k_A	279	Prephenate dehydrogenase; tyrosine synthesis, X-RA	88.04
1pjc_A	361	Protein (L-alanine dehydrogenase); oxidoreductase,	88.03
1hdo_A	206	Biliverdin IX beta reductase; foetal metabolism, H	87.99
2o8l_A	274	V8 protease, taphylococcal serine; serine protease	87.99
3g79_A	478	NDP-N-acetyl-D-galactosaminuronic acid dehydrogen;	87.95
1x13_A	401	NAD(P) transhydrogenase subunit alpha; NAD(H)-bind	87.89
1a5z_A	319	L-lactate dehydrogenase; oxidoreductase, glycolysi	87.81
1yj8_A	375	Glycerol-3-phosphate dehydrogenase; SGPP, structur	87.78
4dll_A	320	2-hydroxy-3-oxopropionate reductase; structural ge	87.76
2pv7_A	298	T-protein [includes: chorismate mutase (EC 5.4.99	87.73
3ojo_A	431	CAP5O; rossmann fold, complex with cofactor NAD an	87.67
3e8x_A	236	Putative NAD-dependent epimerase/dehydratase; stru	87.62
1hyh_A	309	L-hicdh, L-2-hydroxyisocaproate dehydrogenase; L-2	87.62
3ius_A	286	Uncharacterized conserved protein; APC63810, silic	87.55
3c7a_A	404	Octopine dehydrogenase; L) stereospecific opine de	87.49
1p77_A	272	Shikimate 5-dehydrogenase; NADPH, oxidoreductase;	87.47
3gpi_A	286	NAD-dependent epimerase/dehydratase; structural ge	87.45
1l7d_A	384	Nicotinamide nucleotide transhydrogenase, subunit	87.36
1x0v_A	354	GPD-C, GPDH-C, glycerol-3-phosphate dehydrogenase	87.33
2zyd_A	480	6-phosphogluconate dehydrogenase, decarboxylating;	87.29
1zud_1	251	Adenylyltransferase THIF; thiamin, thiazole, prote	87.25
2uyy_A	316	N-PAC protein; long-chain dehydrogenase, cytokine;	87.13
2wtb_A	725	MFP2, fatty acid multifunctional protein (ATMFP2);	87.11
1t2d_A	322	LDH-P, L-lactate dehydrogenase; ternary complex, o	87.01
4ezb_A	317	Uncharacterized conserved protein; structural geno	87.01
2egg_A	297	AROE, shikimate 5-dehydrogenase; dimer, X-RAY diff	86.98
1guz_A	310	Malate dehydrogenase; oxidoreductase, tricarboxyli	86.86
2rcy_A	262	Pyrroline carboxylate reductase; malaria, structur	86.78
3c24_A	286	Putative oxidoreductase; YP_511008.1, structural g	86.77
2g5c_A	281	Prephenate dehydrogenase; TYRA, oxidoreductase; HE	86.75
3qsg_A	312	NAD-binding phosphogluconate dehydrogenase-like P;	86.74
3iwa_A	472	FAD-dependent pyridine nucleotide-disulphide oxido	86.72
3l6d_A	306	Putative oxidoreductase; structural genomics, prot	86.69
3ond_A	488	Adenosylhomocysteinase; plant protein, enzyme-subs	86.67
3phh_A	269	Shikimate dehydrogenase; shikimate pathway, helico	86.62
1vpd_A	299	Tartronate semialdehyde reductase; structural geno	86.58
2aef_A	234	Calcium-gated potassium channel MTHK; rossmann fol	86.5
2ywl_A	180	Thioredoxin reductase related protein; uncharacter	86.49
2gf2_A	296	Hibadh, 3-hydroxyisobutyrate dehydrogenase; struct	86.49
1nvt_A	287	Shikimate 5'-dehydrogenase; structural genomics, P	86.35
3ggo_A	314	Prephenate dehydrogenase; TYRA, HPP, NADH, alpha-b	86.33
2vhw_A	377	Alanine dehydrogenase; NAD, secreted, oxidoreducta	86.31
2dkn_A	255	3-alpha-hydroxysteroid dehydrogenase; oxidoreducta	86.27
3tl2_A	315	Malate dehydrogenase; center for structural genomi	86.25
1pgj_A	478	6PGDH, 6-PGDH, 6-phosphogluconate dehydrogenase; o	86.12
3o38_A	266	Short chain dehydrogenase; tuberculosis, ortholog	85.97
1wdk_A	715	Fatty oxidation complex alpha subunit; alpha2BETA2	85.93
4e21_A	358	6-phosphogluconate dehydrogenase (decarboxylating;	85.91
1gte_A	1025	Dihydropyrimidine dehydrogenase; electron transfer	85.86
3rui_A	340	Ubiquitin-like modifier-activating enzyme ATG7; au	85.8
2pgd_A	482	6-phosphogluconate dehydrogenase; oxidoreductase (	85.79
1m6i_A	493	Programmed cell death protein 8; apoptosis, AIF, o	85.77
1o94_A	729	Tmadh, trimethylamine dehydrogenase; electron tran	85.74
2p4q_A	497	6-phosphogluconate dehydrogenase, decarboxylating;	85.69
3dhn_A	227	NAD-dependent epimerase/dehydratase; reductase, PF	85.68
1ur5_A	309	Malate dehydrogenase; oxidoreductase, tricarboxyli	85.66
2hk9_A	275	Shikimate dehydrogenase; shikimate pathway, drug d	85.65
3r6d_A	221	NAD-dependent epimerase/dehydratase; structural ge	85.64
3eag_A	326	UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-ME	85.48
3vps_A	321	TUNA, NAD-dependent epimerase/dehydratase; tunicam	85.45
3d1l_A	266	Putative NADP oxidoreductase BF3122; structural ge	85.44
1i36_A	264	Conserved hypothetical protein MTH1747; NADP bindi	85.41
3h8v_A	292	Ubiquitin-like modifier-activating enzyme 5; rossm	85.38
1lu9_A	287	Methylene tetrahydromethanopterin dehydrogenase; a	85.3
2iz1_A	474	6-phosphogluconate dehydrogenase, decarboxylating;	85.18
3cky_A	301	2-hydroxymethyl glutarate dehydrogenase; rossmann	85.08
1dlj_A	402	UDP-glucose dehydrogenase; rossmann fold, ternary	85.03
1pjq_A	457	CYSG, siroheme synthase; rossman fold, nucleotide	84.92
3jyo_A	283	Quinate/shikimate dehydrogenase; enzyme-cofactor c	84.82
2o3j_A	481	UDP-glucose 6-dehydrogenase; structural genomics,	84.67
2pzm_A	330	Putative nucleotide sugar epimerase/ dehydratase;	84.57
3zwc_A	742	Peroxisomal bifunctional enzyme; beta oxidation pa	84.56
3tnl_A	315	Shikimate dehydrogenase; structural genomics, cent	84.46
3dqp_A	219	Oxidoreductase YLBE; alpha-beta protein., structur	84.38
1leh_A	364	Leucine dehydrogenase; oxidoreductase; 2.20A {Lysi	84.38
3don_A	277	Shikimate dehydrogenase; alpha-beta structure, ros	84.29
2d5c_A	263	AROE, shikimate 5-dehydrogenase; substrate, dimer,	84.26
1y8q_A	346	Ubiquitin-like 1 activating enzyme E1A; SUMO, hete	84.24
3pid_A	432	UDP-glucose 6-dehydrogenase; rossmann fold, oxidor	84.22
3d4o_A	293	Dipicolinate synthase subunit A; NP_243269.1, stru	84.09
3u62_A	253	Shikimate dehydrogenase; shikimate pathway, oxidor	84.03
1cyd_A	244	Carbonyl reductase; short-chain dehydrogenase, oxi	84.02
3h5n_A	353	MCCB protein; ubiquitin-activating enzyme, microci	84.02
4gwg_A	484	6-phosphogluconate dehydrogenase, decarboxylating;	83.98
3ktd_A	341	Prephenate dehydrogenase; structural genomics, joi	83.96
2rir_A	300	Dipicolinate synthase, A chain; structural genomic	83.91
2z1m_A	345	GDP-D-mannose dehydratase; short-chain dehydrogena	83.87
2qyt_A	317	2-dehydropantoate 2-reductase; APC81190, porphyrom	83.86
3d3w_A	244	L-xylulose reductase; uronate cycle, short-chain d	83.86
4id9_A	347	Short-chain dehydrogenase/reductase; putative dehy	83.77
3gt0_A	247	Pyrroline-5-carboxylate reductase; structural geno	83.77
3pwz_A	272	Shikimate dehydrogenase 3; alpha-beta, oxidoreduct	83.63
1w4x_A	542	Phenylacetone monooxygenase; baeyer-villiger, FAD;	83.57
2izz_A	322	Pyrroline-5-carboxylate reductase 1; amino-acid bi	83.51
3ko8_A	312	NAD-dependent epimerase/dehydratase; isomerase, UD	83.39
1edz_A	320	5,10-methylenetetrahydrofolate dehydrogenase; nucl	83.35
2ydy_A	315	Methionine adenosyltransferase 2 subunit beta; oxi	83.26
3vh1_A	598	Ubiquitin-like modifier-activating enzyme ATG7; au	83.24
2i6t_A	303	Ubiquitin-conjugating enzyme E2-like isoform A; L-	83.22
1np3_A	338	Ketol-acid reductoisomerase; A DEEP figure-OF-eigh	83.07
4gx0_A	565	TRKA domain protein; membrane protein, ION channel	83.0
2pd4_A	275	Enoyl-[acyl-carrier-protein] reductase [NADH]; ant	82.99
3o8q_A	281	Shikimate 5-dehydrogenase I alpha; structural geno	82.78
3oig_A	266	Enoyl-[acyl-carrier-protein] reductase [NADH]; fat	82.7
4gsl_A	615	Ubiquitin-like modifier-activating enzyme ATG7; ub	82.64
3gvi_A	324	Malate dehydrogenase; NAD, oxidoreductase, tricarb	82.58
3pqe_A	326	L-LDH, L-lactate dehydrogenase; FBP, oxidoreductas	82.56
1lqt_A	456	FPRA; NADP+ derivative, oxidoreductase, structural	82.51
1oju_A	294	MDH, malate dehydrogenase; hyperthermophilic, oxid	82.5
4ffl_A	363	PYLC; amino acid, biosynthesis of pyrrolysine, iso	82.46
2q3e_A	467	UDP-glucose 6-dehydrogenase; hexamer, structural g	82.39
1y1p_A	342	ARII, aldehyde reductase II; rossmann fold, short	82.27
2bka_A	242	CC3, TAT-interacting protein TIP30; NADPH, PEG600,	82.26
1y6j_A	318	L-lactate dehydrogenase; southeast collaboratory f	82.16
3fbt_A	282	Chorismate mutase and shikimate 5-dehydrogenase fu	82.13
2wyu_A	261	Enoyl-[acyl carrier protein] reductase; oxidoreduc	82.03
1uay_A	242	Type II 3-hydroxyacyl-COA dehydrogenase; beta oxid	81.98
2ahr_A	259	Putative pyrroline carboxylate reductase; pyrrolin	81.98
2cfc_A	250	2-(R)-hydroxypropyl-COM dehydrogenase; NAD, oxidor	81.97
3tri_A	280	Pyrroline-5-carboxylate reductase; amino acid bios	81.88
3ldh_A	330	Lactate dehydrogenase; oxidoreductase, CHOH donor,	81.84
3awd_A	260	GOX2181, putative polyol dehydrogenase; oxidoreduc	81.82
3orf_A	251	Dihydropteridine reductase; alpha-beta-alpha sandw	81.81
3t4e_A	312	Quinate/shikimate dehydrogenase; structural genomi	81.75
1gpj_A	404	Glutamyl-tRNA reductase; tRNA-dependent tetrapyrro	81.72
1qyc_A	308	Phenylcoumaran benzylic ether reductase PT1; NADPH	81.68
4b4o_A	298	Epimerase family protein SDR39U1; isomerase; HET:	81.66
2o7s_A	523	DHQ-SDH PR, bifunctional 3-dehydroquinate dehydrat	81.53
3k31_A	296	Enoyl-(acyl-carrier-protein) reductase; ssgcid, NI	81.42
2cvz_A	289	Dehydrogenase, 3-hydroxyisobutyrate dehydrogenase;	81.38
3dfu_A	232	Uncharacterized protein from 6-phosphogluconate de	81.24
3qiv_A	253	Short-chain dehydrogenase or 3-oxoacyl-[acyl-CARR	81.23
3k30_A	690	Histamine dehydrogenase; 6-S-cysteinyl-FMN, ADP bi	81.19
3qvo_A	236	NMRA family protein; structural genomics, PSI-biol	81.07
1qsg_A	265	Enoyl-[acyl-carrier-protein] reductase; enoyl redu	80.96
2wsb_A	254	Galactitol dehydrogenase; oxidoreductase, SDR, ros	80.95
3i1j_A	247	Oxidoreductase, short chain dehydrogenase/reducta;	80.89
3f1l_A	252	Uncharacterized oxidoreductase YCIK; E. coli, NADP	80.87
1yb4_A	295	Tartronic semialdehyde reductase; structural genom	80.71

>3fim_B ARYL-alcohol oxidase; AAO, lignin degradation, oxidoreductase, flavoprotein; HET: FAD; 2.55A {Pleurotus eryngii}

Probab=100.00  E-value=1.1e-37  Score=355.56  Aligned_cols=280  Identities=33%  Similarity=0.460  Sum_probs=237.1

Q ss_pred             cccEEEECCcHHHHHHHHHHHhcCCCcEEEEccCCCCCC--CcccCCccccccc-cccccccccccccccccccccccee
Q psy14408        433 CFDIIIVGASAAGCVLANRLSEVSSLKVLLIEAGGDTPI--HSRIPGMSSVLSL-SEFDHAYLAEPSQFAGLGVRNARIK  509 (720)
Q Consensus       433 eyDVVIIGSGiAGLvAA~~LAea~G~KVLVLEKG~~~~~--ss~~Pg~~~~~~~-~~l~~~y~s~p~~~g~l~l~~~~i~  509 (720)
                      +||+||||||.+||++|.+|++..|++|||||||.....  ...+|.+...... ..++|.|..+++.+    +.++.+.
T Consensus         2 ~yD~IIVG~G~aG~v~A~rLse~~~~~VlllEaG~~~~~~~~~~~p~~~~~~~~~~~~~w~~~t~pq~~----~~~r~~~   77 (566)
T 3fim_B            2 DFDYVVVGAGNAGNVVAARLTEDPDVSVLVLEAGVSDENVLGAEAPLLAPGLVPNSIFDWNYTTTAQAG----YNGRSIA   77 (566)
T ss_dssp             CEEEEESCCSTTHHHHHHHHTTSTTCCEEEECSSBCCTTCGGGTSGGGSGGGSSSSTTBCCCBCCCCGG----GTTCCCB
T ss_pred             CcCEEEECCcHHHHHHHHHHHhCcCCcEEEEecCCcccCCCceeCcchHHHhcCCCccccccccccCCC----CCCceEe
Confidence            589999999999999999999955999999999976522  2345554444443 67899998887765    6788899


Q ss_pred             eccccccCCcccccchhhhcCCchhHHHHHHh-cCCCCChhHHHHHHHhhhhchhhhc------cccccccCcCCccccc
Q psy14408        510 ITAGKGLGGSSAVQNILYQRGTSYDYENFAKL-GYNGWGYDETLKYFVKSEDYRSVIY------NESKAVHGTQGYLPVG  582 (720)
Q Consensus       510 ~~~G~~lGGgStvN~~~~~r~s~~d~~eWae~-g~~dWsydellpyF~s~e~~~~~sl------d~d~~v~~~~G~L~va  582 (720)
                      |.+|+++||+|.+|++++.|+...+++.|++. |..+|.|+++++||+++|.+.....      ..+...++..|.+.+.
T Consensus        78 ~~rGk~lGGsS~iN~m~~~Rg~~~d~d~W~~~~G~~gWs~~~~~pyf~k~E~~~~~~~~~~~~~~~~~~~hG~~Gp~~v~  157 (566)
T 3fim_B           78 YPRGRMLGGSSSVHYMVMMRGSTEDFDRYAAVTGDEGWNWDNIQQFVRKNEMVVPPADNHNTSGEFIPAVHGTNGSVSIS  157 (566)
T ss_dssp             CCCBCBTTGGGGTSCCBCCCCCHHHHHHHHHHHTCTTSSHHHHHHHHHHHEEECCCTTCCCCTTTSCGGGSCBSSSEEEB
T ss_pred             ccCCcEEcCcccccceEEecCCHHHHHHHHhcCCCCCcCHHHHHHHHHHHhccCCccccccccccCCccccCCCCCeeee
Confidence            99999999999999999999999999999998 8899999999999999998763211      1233577888988888


Q ss_pred             ccccccchHHHHHHHHHHHHc--CCCCCCCCCCccccccccccCCccccCcchhHHHHHHHHHHhcCCCeEEEcCeEEEE
Q psy14408        583 LFKNKENNIIREIFETSAQEL--GYPCPKDMNDRYVDVGFAELPGMTRYGLRFSAADAYLTPIAGKRTNLYVLKRSKVTK  660 (720)
Q Consensus       583 ~~~~~~~~~~~q~llea~rkl--G~~~~~d~ng~~~~~G~~~~~~g~~~G~k~~aa~a~L~~Aa~e~aGVkIi~gt~Vtk  660 (720)
                      .....  ......++++++++  |++...+++++. ..|++.+...+..|.|..+..+||..++ ++.|++|++++.|++
T Consensus       158 ~~~~~--~~~~~~~~~a~~~~~~G~~~~~d~n~~~-~~G~~~~~~~~~~g~R~sa~~ayL~p~~-~r~NL~Vlt~a~V~r  233 (566)
T 3fim_B          158 LPGFP--TPLDDRVLATTQEQSEEFFFNPDMGTGH-PLGISWSIASVGNGQRSSSSTAYLRPAQ-SRPNLSVLINAQVTK  233 (566)
T ss_dssp             SCSSC--CTHHHHHHHHHHHTHHHHCBCSCGGGSC-CCEEEECCBSEETTEECCHHHHTHHHHT-TCTTEEEESSCEEEE
T ss_pred             cCCCC--CHHHHHHHHHHHHHhcCCCccCCCCCCC-cceEEeeeeecCCCEEcCHHHHHhhhhc-cCCCeEEECCCEEEE
Confidence            77665  56788899999999  998877777766 6788888877878889999999999887 688999999999999


Q ss_pred             EEEc---cC-CcEEEEEEEecCC-cEEEEEcCcEEEEccCCcchHHHHHHcCCCCccccccCCCC
Q psy14408        661 VIIN---DQ-NVATGVEYVNSKG-ETVRVTANKEVILTAGAIANAQLLLLSGIGPKAHLDEVKIP  720 (720)
Q Consensus       661 Il~e---~g-GrAtGV~v~dt~G-~e~tIkAkK~VVVAAGa~~Sp~LLl~SGIgpk~~L~~~gip  720 (720)
                      |+++   ++ ++|+||++.+..| +.++|+|+|+||||||+++||+|||.|||||+++|+++||+
T Consensus       234 Il~~~~~~g~~rA~GVe~~~~~g~~~~~v~A~kEVILsAGai~SPqlL~lSGIGp~~~L~~~gI~  298 (566)
T 3fim_B          234 LVNSGTTNGLPAFRCVEYAEQEGAPTTTVCAKKEVVLSAGSVGTPILLQLSGIGDENDLSSVGID  298 (566)
T ss_dssp             EECCEEETTEEECCEEEEESSTTSCCEEEEEEEEEEECCHHHHHHHHHHHTTEECHHHHHHTTCC
T ss_pred             EEeecCCCCCCEEEEEEEEECCCceEEEEEeeeEEEEecCCcCChHHHHhcCCCChHHHhhcCCC
Confidence            9997   23 7899999987545 77889998899999999999999999999999999999996

>3qvp_A Glucose oxidase; oxidoreductase; HET: NAG BMA MAN FAD; 1.20A {Aspergillus niger} PDB: 1gal_A* 1cf3_A* 3qvr_A*

Probab=100.00  E-value=8.3e-37  Score=349.30  Aligned_cols=282  Identities=30%  Similarity=0.401  Sum_probs=231.2

Q ss_pred             CCCcccEEEECCcHHHHHHHHHHHhcCCCcEEEEccCCCCCC-C--cccCCccccccccccccccccccccccccccccc
Q psy14408        430 SGDCFDIIIVGASAAGCVLANRLSEVSSLKVLLIEAGGDTPI-H--SRIPGMSSVLSLSEFDHAYLAEPSQFAGLGVRNA  506 (720)
Q Consensus       430 ~d~eyDVVIIGSGiAGLvAA~~LAea~G~KVLVLEKG~~~~~-s--s~~Pg~~~~~~~~~l~~~y~s~p~~~g~l~l~~~  506 (720)
                      .+.+||+||||||.+||++|.+|++++|.+|||||||..... .  ...+..+...++..++|.|..+++.     ..++
T Consensus        16 ~~~~yDyIIVGgG~AG~vlA~RLse~~~~~VLlLEaG~~~~~~~~~~~~p~~~~~~~~~~~~w~~~t~~q~-----~~~r   90 (583)
T 3qvp_A           16 SGRTVDYIIAGGGLTGLTTAARLTENPNISVLVIESGSYESDRGPIIEDLNAYGDIFGSSVDHAYETVELA-----TNNQ   90 (583)
T ss_dssp             TTCEEEEEEECCSHHHHHHHHHHTTSTTCCEEEECSSCCCTTSCHHHHBGGGTTTTTTSTTBCCEECCCCT-----TTSC
T ss_pred             CCCCccEEEECCcHHHHHHHHHHHhCCCCcEEEEecCCCCCCCCcceechhhHHhhcCCcccCCccccccC-----CCCC
Confidence            346799999999999999999999976899999999973211 1  2233334444566789999887653     3567


Q ss_pred             ceeeccccccCCcccccchhhhcCCchhHHHHHHhcCC-CCChhHHHHHHHhhhhchhhh-------ccccccccCcCCc
Q psy14408        507 RIKITAGKGLGGSSAVQNILYQRGTSYDYENFAKLGYN-GWGYDETLKYFVKSEDYRSVI-------YNESKAVHGTQGY  578 (720)
Q Consensus       507 ~i~~~~G~~lGGgStvN~~~~~r~s~~d~~eWae~g~~-dWsydellpyF~s~e~~~~~s-------ld~d~~v~~~~G~  578 (720)
                      .+.|.+|+++||+|.+|++++.|+.+.+++.|++++.. +|.|+++++||+++|.+....       ...+...++..|.
T Consensus        91 ~~~~~rGk~LGGsS~iN~m~y~Rg~~~Dyd~W~~~g~~~gW~~~~~lpyf~k~E~~~~~~~~~~~~~~~~~~~~hG~~Gp  170 (583)
T 3qvp_A           91 TALIRSGNGLGGSTLVNGGTWTRPHKAQVDSWETVFGNEGWNWDNVAAYSLQAERARAPNAKQIAAGHYFNASCHGVNGT  170 (583)
T ss_dssp             CCEECCBCSTTGGGGTSCCBCCCCCHHHHHHHHHTSCCTTCSHHHHHHHHHHHEEECCCCHHHHHHTCCCCGGGSCSSSS
T ss_pred             eeeccCceecCCcCcccceEEEeCCHHHHHHHHHhCCCCCCChhHHHHHHHHHHhccCCcchhhcccccCCccccCCCCC
Confidence            88999999999999999999999999999999999877 999999999999999875211       1123457888888


Q ss_pred             cccccc---ccccchHHHHHHHHHHHHcCCCCCCCCCCccccccccccCCccc-cCcchhHHHHHHHHHHhcCCCeEEEc
Q psy14408        579 LPVGLF---KNKENNIIREIFETSAQELGYPCPKDMNDRYVDVGFAELPGMTR-YGLRFSAADAYLTPIAGKRTNLYVLK  654 (720)
Q Consensus       579 L~va~~---~~~~~~~~~q~llea~rklG~~~~~d~ng~~~~~G~~~~~~g~~-~G~k~~aa~a~L~~Aa~e~aGVkIi~  654 (720)
                      +.+...   ...  ....+.++++++++|++...+++++. ..|+..+..... .|.|..+..+||..++ ++.|++|++
T Consensus       171 l~v~~~~~~~~~--~~~~~~~~~a~~~~G~~~~~D~n~~~-~~G~~~~~~t~~~~g~R~saa~ayL~p~~-~r~NL~V~t  246 (583)
T 3qvp_A          171 VHAGPRDTGDDY--SPIVKALMSAVEDRGVPTKKDFGCGD-PHGVSMFPNTLHEDQVRSDAAREWLLPNY-QRPNLQVLT  246 (583)
T ss_dssp             EEEBCCCCSSCB--CTHHHHHHHHHHTTTCCBCCCTTSSC-CCEEECCCBSBCTTCBBCCHHHHHTTTTT-TCTTEEEEC
T ss_pred             EEecCCCCcccC--CHHHHHHHHHHHHcCCCcCCCCCCCC-CceecccceeEcCCCcEecHHHHHHHHhh-cCCCcEEEc
Confidence            887665   222  35678889999999999877888777 677776665543 5778888888998777 678999999


Q ss_pred             CeEEEEEEEcc---CCcEEEEEEEecCCcEEEEEcCcEEEEccCCcchHHHHHHcCCCCccccccCCCC
Q psy14408        655 RSKVTKVIIND---QNVATGVEYVNSKGETVRVTANKEVILTAGAIANAQLLLLSGIGPKAHLDEVKIP  720 (720)
Q Consensus       655 gt~VtkIl~e~---gGrAtGV~v~dt~G~e~tIkAkK~VVVAAGa~~Sp~LLl~SGIgpk~~L~~~gip  720 (720)
                      ++.|++|+++.   +++|+||++.+.+|+.++|+|+|+||||||+++||+|||.|||||+++|+++||+
T Consensus       247 ~a~V~rIl~d~~~~~~ra~GV~~~~~~G~~~~v~A~kEVILsAGa~~SPqLL~lSGIGp~~~L~~~GI~  315 (583)
T 3qvp_A          247 GQYVGKVLLSQNGTTPRAVGVEFGTHKGNTHNVYAKHEVLLAAGSAVSPTILEYSGIGMKSILEPLGID  315 (583)
T ss_dssp             SCEEEEEEEECSSSSCEEEEEEEESSTTCEEEEEEEEEEEECSCTTTHHHHHHHTTBSCHHHHGGGTCC
T ss_pred             CCEEEEEEeccCCCCCEEEEEEEEecCCcEEEEEECCEEEEeCCccCCHHHHHHcCCCCHHHHHhCCCC
Confidence            99999999983   5789999998557888899998899999999999999999999999999999996

>3t37_A Probable dehydrogenase; BET alpha beta fold, ADP binding, oxidoreductase; HET: FAD; 2.19A {Mesorhizobium loti}

Probab=100.00  E-value=2.9e-34  Score=319.82  Aligned_cols=280  Identities=32%  Similarity=0.461  Sum_probs=222.1

Q ss_pred             ccCCCcccEEEECCcHHHHHHHHHHHhcCCCcEEEEccCCCCCCC-cccCCccccccccccccccccccccccccccccc
Q psy14408        428 VKSGDCFDIIIVGASAAGCVLANRLSEVSSLKVLLIEAGGDTPIH-SRIPGMSSVLSLSEFDHAYLAEPSQFAGLGVRNA  506 (720)
Q Consensus       428 I~~d~eyDVVIIGSGiAGLvAA~~LAea~G~KVLVLEKG~~~~~s-s~~Pg~~~~~~~~~l~~~y~s~p~~~g~l~l~~~  506 (720)
                      ++...+|||||||||.+|+++|.+|||..|++|||||||+..... ...|..+....+..++|.|..+++.+    +.++
T Consensus        12 ~~~~~~yD~IIVGsG~aG~v~A~rLse~~~~~VLvLEaG~~~~~~~~~~p~~~~~~~~~~~dw~~~t~p~~~----~~~~   87 (526)
T 3t37_A           12 VEHAPNCDIVIVGGGSAGSLLAARLSEDPDSRVLLIEAGEEPTDPDIWNPAAWPALQGRSYDWDYRTEAQAG----TAGR   87 (526)
T ss_dssp             -----CEEEEEECCSHHHHHHHHHHTTSTTSCEEEECSSBCCCCGGGGSGGGGGGTTTSTTBCCEECCCBGG----GTTB
T ss_pred             ccCCCCeeEEEECccHHHHHHHHHHHhCCCCeEEEEcCCCCCCCcchhChhhHhhccCCccccCccccccCC----CCCC
Confidence            445568999999999999999999999548999999999765322 23344455556677889988877655    6678


Q ss_pred             ceeeccccccCCcccccchhhhcCCchhHHHHHHh-cCCCCChhHHHHHHHhhhhchhhhccccccccCcCCcccccccc
Q psy14408        507 RIKITAGKGLGGSSAVQNILYQRGTSYDYENFAKL-GYNGWGYDETLKYFVKSEDYRSVIYNESKAVHGTQGYLPVGLFK  585 (720)
Q Consensus       507 ~i~~~~G~~lGGgStvN~~~~~r~s~~d~~eWae~-g~~dWsydellpyF~s~e~~~~~sld~d~~v~~~~G~L~va~~~  585 (720)
                      .+.|.+|+++||+|.+|++++.|....+|+.|.+. +..+|.|+++++||+++|......    ...+...|.+.+....
T Consensus        88 ~~~~~rG~~lGGsS~in~~~~~R~~~~Dfd~w~~~~~~~~w~~~~~~pyf~~~E~~~~~~----~~~~~~~g~~~~~~~~  163 (526)
T 3t37_A           88 AHHWARGRLIGGSSCLHAMGYMRGHPSDFQAWVDASGDRRWGWDELLPVFQAIEDHPLGG----DGIHGKGGPLPIHLPA  163 (526)
T ss_dssp             CCEECCBCBTTGGGGTSCCBCCCCCHHHHHHHHHHHSCGGGSHHHHHHHHHHHEECTTTT----SSSSCSSCSEECBCCS
T ss_pred             eEeccCccEECcHHHHhhCEEecCCHHHHHHHHHhcCCCCCChhhhhhhhhhhhhccCCC----ccccCcCCCcCccccc
Confidence            89999999999999999999999999999999874 667899999999999999776432    1244555655444332


Q ss_pred             cccchHHHHHHHHHHHHcCCCCCCCCCCccccccccccCCccccCcchhHHHHHHHHHHhcCCCeEEEcCeEEEEEEEcc
Q psy14408        586 NKENNIIREIFETSAQELGYPCPKDMNDRYVDVGFAELPGMTRYGLRFSAADAYLTPIAGKRTNLYVLKRSKVTKVIIND  665 (720)
Q Consensus       586 ~~~~~~~~q~llea~rklG~~~~~d~ng~~~~~G~~~~~~g~~~G~k~~aa~a~L~~Aa~e~aGVkIi~gt~VtkIl~e~  665 (720)
                      .. .....+.++++.+++|+....+.+... ..+.+.+...+..|.+......++..+++.+.+++|++++.|++|+++ 
T Consensus       164 ~~-~~p~~~~~~~~~~~~G~~~~~~~~~~~-~~~~~~~~~~~~~g~r~s~~~~~~~~~~~~r~nl~v~~~~~v~~i~~~-  240 (526)
T 3t37_A          164 DE-VSPLARAFIEAGASLGLPRLEGHNSGE-MIGVTPNSLNIRDGRRVTAADAWLTKAVRGRKNLTILTGSRVRRLKLE-  240 (526)
T ss_dssp             TT-SCHHHHHHHHHHHHTTCCBCSSSCSSC-CBSBCCCCBCEETTEECCHHHHHSCHHHHTCTTEEEECSCEEEEEEEE-
T ss_pred             cc-CCHHHHHHHHHHHHcCCCcccCCCCCc-ccccccccccccCCcccccccccccccccCCCCeEEEeCCEEEEEEec-
Confidence            22 135677888999999998876666655 566666677777888888887887665535789999999999999999 


Q ss_pred             CCcEEEEEEEecCCcEEEEEcCcEEEEccCCcchHHHHHHcCCCCccccccCCCC
Q psy14408        666 QNVATGVEYVNSKGETVRVTANKEVILTAGAIANAQLLLLSGIGPKAHLDEVKIP  720 (720)
Q Consensus       666 gGrAtGV~v~dt~G~e~tIkAkK~VVVAAGa~~Sp~LLl~SGIgpk~~L~~~gip  720 (720)
                      +++|+||++.+ .++..+++|+ +||||||+++|++||++|||+++++|+++||+
T Consensus       241 ~~~a~gv~~~~-~~~~~~~~a~-~VILsAGai~SP~LLl~SGig~~~~l~~~gi~  293 (526)
T 3t37_A          241 GNQVRSLEVVG-RQGSAEVFAD-QIVLCAGALESPALLMRSGIGPHDVLDAAGVG  293 (526)
T ss_dssp             TTEEEEEEEEE-TTEEEEEEEE-EEEECSHHHHHHHHHHHTTEECHHHHHHHTCC
T ss_pred             CCeEEEEEEEe-cCceEEEeec-ceEEcccccCCcchhhhccCCchhhhhccCCC
Confidence            89999999987 4556788885 79999999999999999999999999998875

>1gpe_A Protein (glucose oxidase); oxidoreductase(flavoprotein); HET: NAG BMA MAN FAD; 1.80A {Penicillium amagasakiense} SCOP: c.3.1.2 d.16.1.1

Probab=100.00  E-value=2.9e-34  Score=328.12  Aligned_cols=280  Identities=30%  Similarity=0.445  Sum_probs=224.9

Q ss_pred             CCcccEEEECCcHHHHHHHHHHHhcCCCcEEEEccCCCCCCC--cc-cCCcccccccccccccccccccccccccccccc
Q psy14408        431 GDCFDIIIVGASAAGCVLANRLSEVSSLKVLLIEAGGDTPIH--SR-IPGMSSVLSLSEFDHAYLAEPSQFAGLGVRNAR  507 (720)
Q Consensus       431 d~eyDVVIIGSGiAGLvAA~~LAea~G~KVLVLEKG~~~~~s--s~-~Pg~~~~~~~~~l~~~y~s~p~~~g~l~l~~~~  507 (720)
                      +.++||||||||.+|+++|.+|+++.|++|+|||||......  .. +|..+...++....|.+..++      .+.++.
T Consensus        22 ~~~~d~iivG~G~~g~~~a~~l~~~~~~~v~~~e~g~~~~~~~~~~~~p~~~~~~~~~~~~w~~~t~p------~~~~~~   95 (587)
T 1gpe_A           22 GKTYDYIIAGGGLTGLTVAAKLTENPKIKVLVIEKGFYESNDGAIIEDPNAYGQIFGTTVDQNYLTVP------LINNRT   95 (587)
T ss_dssp             TCEEEEEEECCSHHHHHHHHHHHTSTTCCEEEEESSCCCTTSCHHHHCGGGTTTTTTSTTBCCEECCC------CTTSCC
T ss_pred             cccCCEEEECcCHHHHHHHHHHHhCCCCcEEEEecCCccCCCcccccChhhHhhccCCcccccccccc------CCCCce
Confidence            467999999999999999999999339999999999765322  12 444443344455678776554      246678


Q ss_pred             eeeccccccCCcccccchhhhcCCchhHHHHHHh-cCCCCChhHHHHHHHhhhhchhhh-------ccccccccCcCCcc
Q psy14408        508 IKITAGKGLGGSSAVQNILYQRGTSYDYENFAKL-GYNGWGYDETLKYFVKSEDYRSVI-------YNESKAVHGTQGYL  579 (720)
Q Consensus       508 i~~~~G~~lGGgStvN~~~~~r~s~~d~~eWae~-g~~dWsydellpyF~s~e~~~~~s-------ld~d~~v~~~~G~L  579 (720)
                      +.|.+|+++||+|.+|++++.|....+|+.|.+. |..+|.|+++++||+++|.+....       ...+...++..|.+
T Consensus        96 ~~~~rGk~lGGsS~in~~~~~R~~~~D~d~W~~~~G~~gW~~~~l~pyf~k~E~~~~~~~~~~~~G~~~~~~~~g~~Gpl  175 (587)
T 1gpe_A           96 NNIKAGKGLGGSTLINGDSWTRPDKVQIDSWEKVFGMEGWNWDNMFEYMKKAEAARTPTAAQLAAGHSFNATCHGTNGTV  175 (587)
T ss_dssp             CEECCBCSTTGGGGTSCCEECCCCHHHHHHHHHTTCCTTCSHHHHHHHHHHTEEECCCCHHHHHHTCCCCGGGCCBSSSE
T ss_pred             eeeeccccccccccccceEEecCCHHHHHHHHHhcCCCCCCHHHHHHHHHHHhcccCCcccccccccccCccccCCCCCE
Confidence            8999999999999999999999999999999998 889999999999999999887431       11133456677887


Q ss_pred             ccccc---ccccchHHHHHHHHHHHHcCCCCCCCCCCccccccccccCCcc-ccCcchhHHHHHHHHHHhcCCCeEEEcC
Q psy14408        580 PVGLF---KNKENNIIREIFETSAQELGYPCPKDMNDRYVDVGFAELPGMT-RYGLRFSAADAYLTPIAGKRTNLYVLKR  655 (720)
Q Consensus       580 ~va~~---~~~~~~~~~q~llea~rklG~~~~~d~ng~~~~~G~~~~~~g~-~~G~k~~aa~a~L~~Aa~e~aGVkIi~g  655 (720)
                      .+...   ...  ....+.+.++++++|++...+.+++. ..|++.+...+ ..|.|+.+..++|..++ ++.|++|+++
T Consensus       176 ~v~~~~~~~~~--~~~~~~~~~a~~~~G~~~~~d~n~~~-~~G~~~~~~~~~~~g~R~sa~~~~l~~~~-~~~nl~i~~~  251 (587)
T 1gpe_A          176 QSGARDNGQPW--SPIMKALMNTVSALGVPVQQDFLCGH-PRGVSMIMNNLDENQVRVDAARAWLLPNY-QRSNLEILTG  251 (587)
T ss_dssp             EEBCCCCSSCB--CTHHHHHHHHHHHTTCCBSCCTTSSC-CCEEECCEESBCTTCCBCCHHHHHTTTTT-TCTTEEEEES
T ss_pred             EEccCCCcCCC--CHHHHHHHHHHHHcCCCcCCCCCCCC-CCEEEecceEECCCCcccCHHHHHHHHhh-cCCCcEEEcC
Confidence            77633   122  45778899999999998877777766 56776655433 35788888888997666 5789999999


Q ss_pred             eEEEEEEEcc-C--CcEEEEEEEecCCcEEEEEcCcEEEEccCCcchHHHHHHcCCCCccccccCCCC
Q psy14408        656 SKVTKVIIND-Q--NVATGVEYVNSKGETVRVTANKEVILTAGAIANAQLLLLSGIGPKAHLDEVKIP  720 (720)
Q Consensus       656 t~VtkIl~e~-g--GrAtGV~v~dt~G~e~tIkAkK~VVVAAGa~~Sp~LLl~SGIgpk~~L~~~gip  720 (720)
                      +.|++|++++ +  ++|+||++.+.+|+..+|+|+|+||||||++++++||++|||||+++|+++||+
T Consensus       252 ~~v~~l~~~~~~~~~~~~GV~~~~~~g~~~~v~A~k~VILaaG~~~sp~lL~~SGIGp~~~L~~~gI~  319 (587)
T 1gpe_A          252 QMVGKVLFKQTASGPQAVGVNFGTNKAVNFDVFAKHEVLLAAGSAISPLILEYSGIGLKSVLDQANVT  319 (587)
T ss_dssp             CEEEEEEEEEETTEEEEEEEEEEEETTEEEEEEEEEEEEECSCTTTHHHHHHHTTEECHHHHHHTTCC
T ss_pred             CEEEEEEECCCCCCCEEEEEEEEeCCCcEEEEEecccEEEccCCCCCHHHHHhCCCCCHHHHHhCCCC
Confidence            9999999972 1  589999998556877899996689999999999999999999999999999996

>3q9t_A Choline dehydrogenase and related flavoproteins; glucose-methanol-choline oxidoreductase family, formate OXID formyl-FAD, oxidoreductase; HET: FAY; 2.24A {Aspergillus oryzae}

Probab=100.00  E-value=2.8e-34  Score=328.12  Aligned_cols=275  Identities=27%  Similarity=0.445  Sum_probs=217.2

Q ss_pred             CCcccEEEECCcHHHHHHHHHHHhcCC-CcEEEEccCCCCC---CCcccCCccccccccccccccccccccccccccccc
Q psy14408        431 GDCFDIIIVGASAAGCVLANRLSEVSS-LKVLLIEAGGDTP---IHSRIPGMSSVLSLSEFDHAYLAEPSQFAGLGVRNA  506 (720)
Q Consensus       431 d~eyDVVIIGSGiAGLvAA~~LAea~G-~KVLVLEKG~~~~---~ss~~Pg~~~~~~~~~l~~~y~s~p~~~g~l~l~~~  506 (720)
                      ..+||+||||||.+||++|.+|+++ | .+|||||||....   ....+|..+....+..++|.|..+        +.++
T Consensus         4 ~~~yDyIVVGgG~AG~v~A~rLse~-~~~~VLllEaG~~~~~~~~~i~~P~~~~~~~~~~~dW~y~t~--------~~~r   74 (577)
T 3q9t_A            4 GSHFDFVIVGGGTAGNTVAGRLAEN-PNVTVLIVEAGIGNPEDIPEITTPSSAMDLRNSKYDWAYKTT--------MVRR   74 (577)
T ss_dssp             TCEEEEEEESCSHHHHHHHHHHTTS-TTSCEEEECSSCSCGGGCHHHHCGGGGGGGTTSTTBCCEEEE--------EEEE
T ss_pred             CCcccEEEECCcHHHHHHHHHHHhC-CCCcEEEEecCCCCCCCCceEECchhhhhccCCCcccceEEE--------ECCc
Confidence            3569999999999999999999999 6 7999999997621   123455555556667788888655        2334


Q ss_pred             cee------eccccccCCcccccchhhhcCCchhHHHHHHhcCCCCChhHHHHHHHhhhhchhhhc--cccccccCcCCc
Q psy14408        507 RIK------ITAGKGLGGSSAVQNILYQRGTSYDYENFAKLGYNGWGYDETLKYFVKSEDYRSVIY--NESKAVHGTQGY  578 (720)
Q Consensus       507 ~i~------~~~G~~lGGgStvN~~~~~r~s~~d~~eWae~g~~dWsydellpyF~s~e~~~~~sl--d~d~~v~~~~G~  578 (720)
                      .+.      |.+|+++||+|.+|++++.|+...+++.|++.|..+|.|+++++||++.|.+.....  +.+...++..|.
T Consensus        75 ~~~~~~~~~~~rGkvLGGsS~iN~m~~~rg~~~dyd~W~~~G~~gW~~~~~lpyf~k~e~~~~~~~~~~~~~~~hG~~Gp  154 (577)
T 3q9t_A           75 DDYERIEKPNTRGKTLGGSSSLNYFTWVPGHKATFDQWEEFGGKEWTWDPLVPYLRKSATYHDDPRLYSPELEKIGGGGP  154 (577)
T ss_dssp             TTEEEEEEEECCBCSTTGGGGTSCCEECCCCHHHHHTTHHHHCGGGSHHHHHHHHHHTEEEECTTCCSCGGGGGGCCSCS
T ss_pred             cccccccccccccccccCccccCceEeccCCHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCCCccccCCccccCCCCCC
Confidence            444      899999999999999999999999999999998899999999999999987753211  111235677888


Q ss_pred             cccccccccc-chHHHHHHHHHHHHcCCCCCCCCCCccccccccccCCccccCcchhHHHHHHHHHHhcCCCeEEEcCeE
Q psy14408        579 LPVGLFKNKE-NNIIREIFETSAQELGYPCPKDMNDRYVDVGFAELPGMTRYGLRFSAADAYLTPIAGKRTNLYVLKRSK  657 (720)
Q Consensus       579 L~va~~~~~~-~~~~~q~llea~rklG~~~~~d~ng~~~~~G~~~~~~g~~~G~k~~aa~a~L~~Aa~e~aGVkIi~gt~  657 (720)
                      +.+....... .....+.++++++++|++...+++++. ..|+......+..|.+..+. .++   + ++.|++|++++.
T Consensus       155 l~v~~~~~~~~~~~~~~~~~~a~~~~G~~~~~d~n~~~-~~G~~~~~~~~~~g~R~s~~-~~l---~-~r~Nl~v~~~a~  228 (577)
T 3q9t_A          155 IPISHAELIDEMAPFRENLTKAWKSMGQPLIENIYDGE-MDGLTHCCDTIYRGQRSGSF-LFV---K-NKPNITIVPEVH  228 (577)
T ss_dssp             EEEEECCCCGGGHHHHHHHHHHHHHTTCCBCSCCSSSC-CCEEEECEESEETTEECCGG-GGS---S-SCTTEEEECSEE
T ss_pred             EEeeCCCCCcccchHHHHHHHHHHHcCCCcCCCCCCCC-cCeEEeecceecCCeEeeHH-HHH---h-cCCCeEEEcCcE
Confidence            8776644320 023566778888999998877777766 67776666556566665543 232   3 477999999999


Q ss_pred             EEEEEEcc-CCcEEEEEEEecCCcEEEEEcCcEEEEccCCcchHHHHHHcCCCCccccccCCCC
Q psy14408        658 VTKVIIND-QNVATGVEYVNSKGETVRVTANKEVILTAGAIANAQLLLLSGIGPKAHLDEVKIP  720 (720)
Q Consensus       658 VtkIl~e~-gGrAtGV~v~dt~G~e~tIkAkK~VVVAAGa~~Sp~LLl~SGIgpk~~L~~~gip  720 (720)
                      |++|+++. +++|+||++.+.+|+.++|+|+|+||||||++.|++||+.|||||+++|+++||+
T Consensus       229 v~ri~~~~~~~~a~GV~~~~~~g~~~~v~A~keVILsaGa~~sp~lL~~SGIGp~~~L~~~GI~  292 (577)
T 3q9t_A          229 SKRLIINEADRTCKGVTVVTAAGNELNFFADREVILSQGVFETPKLLMLSGIGPTRELSRHGIN  292 (577)
T ss_dssp             EEEEEEETTTTEEEEEEEEETTSCEEEEEEEEEEEECSHHHHHHHHHHHTTEECHHHHHTTTCC
T ss_pred             EEEEEEeCCCCEEEEEEEEeCCCcEEEEEeeeEEEEcccccCChHHHHHcCCCCHHHHHHcCCC
Confidence            99999983 5789999998755888899998899999999999999999999999999999996

>2jbv_A Choline oxidase; alcohol oxidation, flavoenyzme oxidase, covalently linked FAD, C4A-adduct, flavoprotein, oxidoreductase; HET: FAO; 1.86A {Arthrobacter globiformis} PDB: 3nne_A* 3ljp_A*

Probab=100.00  E-value=1e-32  Score=312.65  Aligned_cols=277  Identities=29%  Similarity=0.407  Sum_probs=221.8

Q ss_pred             CcccEEEECCcHHHHHHHHHHHhcCCCcEEEEccCCCCCC-C-cccCCccccccccccccccccccccccccccccccee
Q psy14408        432 DCFDIIIVGASAAGCVLANRLSEVSSLKVLLIEAGGDTPI-H-SRIPGMSSVLSLSEFDHAYLAEPSQFAGLGVRNARIK  509 (720)
Q Consensus       432 ~eyDVVIIGSGiAGLvAA~~LAea~G~KVLVLEKG~~~~~-s-s~~Pg~~~~~~~~~l~~~y~s~p~~~g~l~l~~~~i~  509 (720)
                      .++||||||||.+|+++|.+|++++|++|+|||||..... . ...+..+....+....|.+...++..     .++.+.
T Consensus        12 ~~~d~~ivG~G~~G~~~a~~l~~~~~~~v~~~e~g~~~~~~~~~~~p~~~~~~~~~~~~w~~~~~p~~~-----~~~~~~   86 (546)
T 2jbv_A           12 REFDYIVVGGGSAGAAVAARLSEDPAVSVALVEAGPDDRGVPEVLQLDRWMELLESGYDWDYPIEPQEN-----GNSFMR   86 (546)
T ss_dssp             CEEEEEEECCSHHHHHHHHHHTTSTTSCEEEECSSCCCTTCHHHHBGGGGGGGTTSTTBCCEEBCCCSS-----SCTTCE
T ss_pred             CcCCEEEECcCHHHHHHHHHHHhCCCCCEEEEecCCcCCCCccccChhhHHhhcCCcccccccccccCC-----CCceEE
Confidence            4699999999999999999999976899999999976533 1 23333332233445677776554332     456788


Q ss_pred             eccccccCCcccccchhhhcCCchhHHHHHH-hcCCCCChhHHHHHHHhhhhchhhhccccccccCcCCccccccccccc
Q psy14408        510 ITAGKGLGGSSAVQNILYQRGTSYDYENFAK-LGYNGWGYDETLKYFVKSEDYRSVIYNESKAVHGTQGYLPVGLFKNKE  588 (720)
Q Consensus       510 ~~~G~~lGGgStvN~~~~~r~s~~d~~eWae-~g~~dWsydellpyF~s~e~~~~~sld~d~~v~~~~G~L~va~~~~~~  588 (720)
                      |.+|+++||++.+|++++.|....+++.|.+ .|..+|.|+++++||+++|.+.... + +...++..|.+.+...... 
T Consensus        87 ~~rGk~lGGsS~in~~~~~R~~~~d~d~w~~~~G~~gW~~~~l~pyf~k~e~~~~~~-~-~~~~~g~~Gpl~v~~~~~~-  163 (546)
T 2jbv_A           87 HARAKVMGGCSSHNSCIAFWAPREDLDEWEAKYGATGWNAEAAWPLYKRLETNEDAG-P-DAPHHGDSGPVHLMNVPPK-  163 (546)
T ss_dssp             ECCBCSTTGGGGTSCCBCCCCCHHHHHHHHHTTCCTTCSHHHHHHHHHHHEEETTCB-T-TBTTSCBSCSEEEEECCSC-
T ss_pred             eecccccccCccccceEEecCCHHHHHHHHHhcCCCCCCHHHHHHHHHHHhhccCCC-C-ccccCCCCCCEEEecCCCC-
Confidence            9999999999999999999999999999998 7888999999999999999876411 0 0235666787777554444 


Q ss_pred             chHHHHHHHHHHHHcCCCCCCCCCCcc-ccccccccCCccc-cCcchhHHHHHHHHHHhcCCCeEEEcCeEEEEEEEccC
Q psy14408        589 NNIIREIFETSAQELGYPCPKDMNDRY-VDVGFAELPGMTR-YGLRFSAADAYLTPIAGKRTNLYVLKRSKVTKVIINDQ  666 (720)
Q Consensus       589 ~~~~~q~llea~rklG~~~~~d~ng~~-~~~G~~~~~~g~~-~G~k~~aa~a~L~~Aa~e~aGVkIi~gt~VtkIl~e~g  666 (720)
                       ....+.+.++++++|++.. +.++.. .+.|+..+..+|. .|.|..+..++|..++ ++.|++|++++.|++|+++ +
T Consensus       164 -~~~~~~~~~a~~~~G~~~~-d~n~~~~~~~g~~~~~~~~~~~g~R~s~~~a~l~~a~-~~~~~~i~~~~~V~~i~~~-~  239 (546)
T 2jbv_A          164 -DPTGVALLDACEQAGIPRA-KFNTGTTVVNGANFFQINRRADGTRSSSSVSYIHPIV-EQENFTLLTGLRARQLVFD-A  239 (546)
T ss_dssp             -CHHHHHHHHHHHHTTCCBC-CSSSSSCCSSEEEECEECBCTTSBBCCHHHHHTGGGT-TCTTEEEECSCEEEEEEEC-T
T ss_pred             -CHHHHHHHHHHHHCCCCcc-CCCCCCcCcceEEeeeeecCCCCeEcCHHHHHHHHHh-cCCCcEEEeCCEEEEEEEC-C
Confidence             5678889999999999877 655432 1456667777777 7888888888998876 5789999999999999998 6


Q ss_pred             -CcEEEEEEEec-CCcEEEEEcCcEEEEccCCcchHHHHHHcCCCCccccccCCCC
Q psy14408        667 -NVATGVEYVNS-KGETVRVTANKEVILTAGAIANAQLLLLSGIGPKAHLDEVKIP  720 (720)
Q Consensus       667 -GrAtGV~v~dt-~G~e~tIkAkK~VVVAAGa~~Sp~LLl~SGIgpk~~L~~~gip  720 (720)
                       ++|+||++.+. +|+..+|+|+|+||||||++++++||++||||++++|+++||+
T Consensus       240 ~~~~~GV~~~~~~~g~~~~i~A~k~VIlaaG~~~sp~lL~~SGiG~~~~L~~~gi~  295 (546)
T 2jbv_A          240 DRRCTGVDIVDSAFGHTHRLTARNEVVLSTGAIDTPKLLMLSGIGPAAHLAEHGIE  295 (546)
T ss_dssp             TSBEEEEEEESSTTSCEEEEEEEEEEEECSHHHHHHHHHHHTTEECHHHHHHTTCC
T ss_pred             CCeEEEEEEEECCCCcEEEEEeCccEEEecCccCCchhhhhcCCCchHHHHhcCCc
Confidence             89999999873 2777889998689999999999999999999999999999985

>1ju2_A HydroxynitrIle lyase; flavin, GMC oxidoreductase, almond, cyanogenesis; HET: NAG NDG FUC BMA MAN FAD; 1.47A {Prunus dulcis} SCOP: c.3.1.2 d.16.1.1 PDB: 3gdp_A* 3gdn_A*

Probab=99.94  E-value=4.1e-27  Score=266.16  Aligned_cols=266  Identities=27%  Similarity=0.350  Sum_probs=179.7

Q ss_pred             cccccccccccCCCCCCCCcccCCCcccEEEECCcHHHHHHHHHHHhcCCCcEEEEccCCCCCCCc--ccCCcccccccc
Q psy14408        408 EKERYNIYRSVIYPPDMTPYVKSGDCFDIIIVGASAAGCVLANRLSEVSSLKVLLIEAGGDTPIHS--RIPGMSSVLSLS  485 (720)
Q Consensus       408 ~~~~y~flq~~~~P~~~~~~I~~d~eyDVVIIGSGiAGLvAA~~LAea~G~KVLVLEKG~~~~~ss--~~Pg~~~~~~~~  485 (720)
                      ..+.|.|++..   .    ......+|||||||||.+|+++|.+|++  |.+|||||||.......  ..+..+..... 
T Consensus         8 ~~~~~~~~~~~---~----~~~~~~~yD~IIVGsG~AG~v~A~rLse--g~~VlvLEaG~~~~~~~~~~~~~~~~~~~~-   77 (536)
T 1ju2_A            8 DFSYLSFAYDA---T----DLELEGSYDYVIVGGGTSGCPLAATLSE--KYKVLVLERGSLPTAYPNVLTADGFVYNLQ-   77 (536)
T ss_dssp             CCGGGGGEEEG---G----GSCSEEEEEEEEECCSTTHHHHHHHHTT--TSCEEEECSSBCGGGSGGGGBGGGHHHHHH-
T ss_pred             CcccCccccCc---c----cccccCcccEEEECccHHHHHHHHHHhc--CCcEEEEecCCCcCCCcceecchhHhhhcc-
Confidence            34567777751   1    1123457999999999999999999998  89999999997542111  11111100000 


Q ss_pred             cccccccccccccccccccccceeeccccccCCcccccchhhhcCCchhHHHHHHhcCCCCChhHHHHHHHhhhhchhhh
Q psy14408        486 EFDHAYLAEPSQFAGLGVRNARIKITAGKGLGGSSAVQNILYQRGTSYDYENFAKLGYNGWGYDETLKYFVKSEDYRSVI  565 (720)
Q Consensus       486 ~l~~~y~s~p~~~g~l~l~~~~i~~~~G~~lGGgStvN~~~~~r~s~~d~~eWae~g~~dWsydellpyF~s~e~~~~~s  565 (720)
                      ...| |...++..    +.++.+.+.+|+++||++.+|++++.|....+++.+    +.+|.|++++++|+++|..... 
T Consensus        78 ~~~~-~~t~~q~~----~~~~~~~~~rg~~lGGsS~in~~~~~R~~~~d~~~~----G~~W~~~~~~p~~~~~e~~~~~-  147 (536)
T 1ju2_A           78 QEDD-GKTPVERF----VSEDGIDNVRGRVLGGTSIINAGVYARANTSIYSAS----GVDWDMDLVNQTYEWVEDTIVY-  147 (536)
T ss_dssp             SCCC-SSSSEEEE----ECTTSCEEEEECBTTGGGGTSCCEECBCCTTSSTTS----SSCCCHHHHHHHHHHHHHHHCB-
T ss_pred             CCCc-CcCCCccc----cCCCcceeecceeccccccccCeEEEeCCHHHHhhc----cCCCChHHHHHHHHhhhcccCC-
Confidence            1112 22222222    334567889999999999999999999988877532    2359999999999999865421 


Q ss_pred             ccccccccCcCCcccccccccccchHHHHHHHHHHHHcCCCCCC----CCCCccccccccccCCccccCcchhHHHHHHH
Q psy14408        566 YNESKAVHGTQGYLPVGLFKNKENNIIREIFETSAQELGYPCPK----DMNDRYVDVGFAELPGMTRYGLRFSAADAYLT  641 (720)
Q Consensus       566 ld~d~~v~~~~G~L~va~~~~~~~~~~~q~llea~rklG~~~~~----d~ng~~~~~G~~~~~~g~~~G~k~~aa~a~L~  641 (720)
                             .           ...  ....+.+.++++++|+....    +...+. .+|.+.+   +..|.+..+.. ++.
T Consensus       148 -------~-----------~~~--~~~~~~~~~a~~~~G~~~~~~~~~~~~~g~-~~g~~~~---~~~g~r~s~~~-~~~  202 (536)
T 1ju2_A          148 -------K-----------PNS--QSWQSVTKTAFLEAGVHPNHGFSLDHEEGT-RITGSTF---DNKGTRHAADE-LLN  202 (536)
T ss_dssp             -------C-----------CCC--CHHHHHHHHHHHHTTCCCEEEECCBCCSEE-EECEESB---CTTSBBCCGGG-GGG
T ss_pred             -------C-----------CCC--CcHHHHHHHHHHHcCCCCCCCcccCCCCCc-eeeeEEE---CCCCeEecHHH-hhh
Confidence                   0           001  23456777888888885321    111111 1222221   13455554443 554


Q ss_pred             HHHhcCCCeEEEcCeEEEEEEEccC--CcEEEEEEEecCCcEEEEE--cCcEEEEccCCcchHHHHHHcCCCCccccccC
Q psy14408        642 PIAGKRTNLYVLKRSKVTKVIINDQ--NVATGVEYVNSKGETVRVT--ANKEVILTAGAIANAQLLLLSGIGPKAHLDEV  717 (720)
Q Consensus       642 ~Aa~e~aGVkIi~gt~VtkIl~e~g--GrAtGV~v~dt~G~e~tIk--AkK~VVVAAGa~~Sp~LLl~SGIgpk~~L~~~  717 (720)
                      .+  ++.|++|++++.|++|+++++  ++|+||++.+.+|++.+++  ++|+||||||++++++||++||||++++|+++
T Consensus       203 ~~--~~~~~~v~~~~~v~~i~~~~~~~~~~~GV~~~~~~g~~~~~~v~a~k~VILaaGa~~sp~lL~~SGig~~~~l~~~  280 (536)
T 1ju2_A          203 KG--NSNNLRVGVHASVEKIIFSNAPGLTATGVIYRDSNGTPHQAFVRSKGEVIVSAGTIGTPQLLLLSGVGPESYLSSL  280 (536)
T ss_dssp             GS--CTTTEEEEESCEEEEEEECCSSSCBEEEEEEECTTSCEEEEEEEEEEEEEECCHHHHHHHHHHHTTEECHHHHHHT
T ss_pred             hh--cCCCcEEEeCCEEEEEEECCCCCCEEEEEEEEeCCCceEEEEeccCCEEEEcCcccCCHHHHHHcCCCCHHHHHhc
Confidence            43  478999999999999999822  4899999987557655663  54689999999999999999999999999999


Q ss_pred             CCC
Q psy14408        718 KIP  720 (720)
Q Consensus       718 gip  720 (720)
                      ||+
T Consensus       281 gi~  283 (536)
T 1ju2_A          281 NIP  283 (536)
T ss_dssp             TCC
T ss_pred             CCc
Confidence            985

>1coy_A Cholesterol oxidase; oxidoreductase(oxygen receptor); HET: AND FAD; 1.80A {Brevibacterium sterolicum} SCOP: c.3.1.2 d.16.1.1 PDB: 3cox_A*

Probab=99.94  E-value=2.5e-26  Score=257.76  Aligned_cols=260  Identities=21%  Similarity=0.219  Sum_probs=187.3

Q ss_pred             ccCCCcccEEEECCcHHHHHHHHHHHhcCCCcEEEEccCCCCCCCcccCC---ccccc-ccccccccccccccccc----
Q psy14408        428 VKSGDCFDIIIVGASAAGCVLANRLSEVSSLKVLLIEAGGDTPIHSRIPG---MSSVL-SLSEFDHAYLAEPSQFA----  499 (720)
Q Consensus       428 I~~d~eyDVVIIGSGiAGLvAA~~LAea~G~KVLVLEKG~~~~~ss~~Pg---~~~~~-~~~~l~~~y~s~p~~~g----  499 (720)
                      +..+.++|+||||||.+|+++|.+|++. |++|+|||++.....  ..+.   +.... ......|.+..+++..+    
T Consensus         6 ~~~~~~~d~~iiG~G~~g~~~a~~l~~~-~~~v~~~e~~~~~~~--~~p~~~~~~~~~~~~~~~~w~~~~~pq~~~~~~~   82 (507)
T 1coy_A            6 LADGDRVPALVIGSGYGGAVAALRLTQA-GIPTQIVEMGRSWDT--PGSDGKIFCGMLNPDKRSMWLADKTDQPVSNFMG   82 (507)
T ss_dssp             CCTTCEEEEEEECCSHHHHHHHHHHHHT-TCCEEEECSSCCSCS--CCTTSCSSCCSSSCCTTSBBSCSBCCCSSCSBTT
T ss_pred             CCcCCcCCEEEECCCHHHHHHHHHHHHC-CCcEEEEECCCCCCC--CCCccccccccccccccccccccccccccccccc
Confidence            4455679999999999999999999998 999999999975431  1221   11111 12246777766543110    


Q ss_pred             -------cccc------cccceeeccccccCCcccccchhhhcCCchhHHHHHHhcCCCCChhHHH-HHHHhhhhchhhh
Q psy14408        500 -------GLGV------RNARIKITAGKGLGGSSAVQNILYQRGTSYDYENFAKLGYNGWGYDETL-KYFVKSEDYRSVI  565 (720)
Q Consensus       500 -------~l~l------~~~~i~~~~G~~lGGgStvN~~~~~r~s~~d~~eWae~g~~dWsydell-pyF~s~e~~~~~s  565 (720)
                             ....      .++.+.|.+|+++||+|.+|++++.|....+|+.|..    .|.|++++ +||+++|.+....
T Consensus        83 ~~~~~~~~~~~g~~~~~~~~~~~~~rg~~lGGsS~in~~~~~R~~~~dfd~w~~----~w~~~~l~~pyy~~~E~~~~~~  158 (507)
T 1coy_A           83 FGINKSIDRYVGVLDSERFSGIKVYQGRGVGGGSLVNGGMAVTPKRNYFEEILP----SVDSNEMYNKYFPRANTGLGVN  158 (507)
T ss_dssp             BSCCCBCCCCBCSEEEEECSSCEEEEECSTTGGGGTSCCBCCCCCHHHHHHHCT----TSCHHHHHHTHHHHHHHHHTCB
T ss_pred             cccccccccccceeeEecCCCeEEEEecccchHHHhhCeEEeeCCHHHHHhhCC----ccchhcchhHHHHHHHHHhCCC
Confidence                   0111      4567889999999999999999999999999999964    68999999 9999999876421


Q ss_pred             ccccccccCcCCcccccccccccchHHHHHHHHHHHHcCC-----CCCCCCCCc--------cccccccccCCccccCcc
Q psy14408        566 YNESKAVHGTQGYLPVGLFKNKENNIIREIFETSAQELGY-----PCPKDMNDR--------YVDVGFAELPGMTRYGLR  632 (720)
Q Consensus       566 ld~d~~v~~~~G~L~va~~~~~~~~~~~q~llea~rklG~-----~~~~d~ng~--------~~~~G~~~~~~g~~~G~k  632 (720)
                      .        ..+... .... .  ....+.+.++++++|+     +...++++.        ..+..++.|..+|..| |
T Consensus       159 ~--------~~~~~~-~~~~-~--~~~~~~~~~a~~~~G~~~~~~p~~~d~n~~~~~g~~~~~~~~~~g~C~~gc~~g-R  225 (507)
T 1coy_A          159 N--------IDQAWF-ESTE-W--YKFARTGRKTAQRSGFTTAFVPNVYDFEYMKKEAAGQVTKSGLGGEVIYGNNAG-K  225 (507)
T ss_dssp             C--------CCHHHH-HHCG-G--GHHHHHHHHHHHHTTCCEEECCBSBCHHHHHHHHTTCSCCSTTTTCSTTCCSSS-B
T ss_pred             C--------CCCccc-cccc-c--chHHHHHHHHHHHcCCCCccCCcccccCcccccCCCcccCccccccccccCCCC-C
Confidence            0        000000 0000 1  2456778889999999     433333211        1122334445678888 8


Q ss_pred             hhHHHHHHHHHHhcCCCeEEEcCeEEEEEEEccCC-cEEEEEEEecCC---cEEEEEcCcEEEEccCCcchHHHHHHcC-
Q psy14408        633 FSAADAYLTPIAGKRTNLYVLKRSKVTKVIINDQN-VATGVEYVNSKG---ETVRVTANKEVILTAGAIANAQLLLLSG-  707 (720)
Q Consensus       633 ~~aa~a~L~~Aa~e~aGVkIi~gt~VtkIl~e~gG-rAtGV~v~dt~G---~e~tIkAkK~VVVAAGa~~Sp~LLl~SG-  707 (720)
                      ..+..++|..++ ++.|++|++++.|++|++++++ +|+||++.+.+|   ++.+|+|+ +||||||++.+++||++|| 
T Consensus       226 ~s~~~~~l~~a~-~~~n~~i~~~~~v~~i~~~~~g~~~~gV~~~~~~g~~~~~~~~~A~-~VIlaaGa~~sp~lL~~Sg~  303 (507)
T 1coy_A          226 KSLDKTYLAQAA-ATGKLTITTLHRVTKVAPATGSGYSVTMEQIDEQGNVVATKVVTAD-RVFFAAGSVGTSKLLVSMKA  303 (507)
T ss_dssp             CCTTTTHHHHHH-HTTCEEEECSEEEEEEEECSSSSEEEEEEEECTTSCEEEEEEEEEE-EEEECSHHHHHHHHHHHHHH
T ss_pred             cChHHHHHHHHH-hcCCcEEEeCCEEEEEEECCCCCEEEEEEEeCCCCcccccEEEEeC-EEEEccCccCCHHHHHhccc
Confidence            888888998887 4557999999999999998324 799999986445   36789997 7999999999999999999 


Q ss_pred             CC
Q psy14408        708 IG  709 (720)
Q Consensus       708 Ig  709 (720)
                      ++
T Consensus       304 iG  305 (507)
T 1coy_A          304 QG  305 (507)
T ss_dssp             TT
T ss_pred             CC
Confidence            66

>1n4w_A CHOD, cholesterol oxidase; flavoenzyme, steroid metabolism, oxidoreductase, atomic RESO; HET: FAD; 0.92A {Streptomyces SP} SCOP: c.3.1.2 d.16.1.1 PDB: 1b4v_A* 1n1p_A* 1n4u_A* 1n4v_A* 1mxt_A* 2gew_A* 1b8s_A* 3gyi_A* 1cc2_A* 3gyj_A* 1ijh_A* 1cbo_A* 3b3r_A* 3b6d_A* 3cnj_A*

Probab=99.94  E-value=5.4e-26  Score=254.76  Aligned_cols=257  Identities=17%  Similarity=0.147  Sum_probs=184.3

Q ss_pred             CcccEEEECCcHHHHHHHHHHHhcCCCcEEEEccCCCCCC-Cc--ccCCcccccccccccccccccccc-----------
Q psy14408        432 DCFDIIIVGASAAGCVLANRLSEVSSLKVLLIEAGGDTPI-HS--RIPGMSSVLSLSEFDHAYLAEPSQ-----------  497 (720)
Q Consensus       432 ~eyDVVIIGSGiAGLvAA~~LAea~G~KVLVLEKG~~~~~-ss--~~Pg~~~~~~~~~l~~~y~s~p~~-----------  497 (720)
                      .++||||||||.+|+++|.+|++. |++|+|||++..... ..  ..+... ........|.+...++.           
T Consensus         4 ~~~d~~iiG~G~~g~~~a~~l~~~-~~~v~~~e~~~~~~~~~~~~~~~~~~-~~~~~~~~w~~~t~p~~~~~~l~~~~~~   81 (504)
T 1n4w_A            4 GYVPAVVIGTGYGAAVSALRLGEA-GVQTLMLEMGQLWNQPGPDGNIFCGM-LNPDKRSSWFKNRTEAPLGSFLWLDVVN   81 (504)
T ss_dssp             CEEEEEEECCSHHHHHHHHHHHHT-TCCEEEEESSCCCCCCCTTSSSSCCT-TSCCGGGSBSCSBCCCCTTCHHHHGGGC
T ss_pred             CcCCEEEECCCHHHHHHHHHHHhC-CCcEEEEeCCCCCCCCCCcccccccc-cccCcccccccccccccccccccccccc
Confidence            468999999999999999999998 999999999975432 21  111111 11123456776654431           


Q ss_pred             ---cccc----cccccceeeccccccCCcccccchhhhcCCchhHHHHHHhcCCCCChhHHH-HHHHhhhhchhhhcccc
Q psy14408        498 ---FAGL----GVRNARIKITAGKGLGGSSAVQNILYQRGTSYDYENFAKLGYNGWGYDETL-KYFVKSEDYRSVIYNES  569 (720)
Q Consensus       498 ---~g~l----~l~~~~i~~~~G~~lGGgStvN~~~~~r~s~~d~~eWae~g~~dWsydell-pyF~s~e~~~~~sld~d  569 (720)
                         ....    ...++.+.|.+|+++||+|.+|++++.|....+|+.|..    .|.|++++ +||+++|.+......  
T Consensus        82 ~~~~~~~g~~~~~~~~~~~~~rg~~lGGsS~in~~~~~R~~~~Dfd~w~~----~w~~~~l~~pyy~~~E~~~~~~~~--  155 (504)
T 1n4w_A           82 RNIDPYAGVLDRVNYDQMSVYVGRGVGGGSLVNGGMAVEPKRSYFEEILP----RVDSSEMYDRYFPRANSMLRVNHI--  155 (504)
T ss_dssp             CBCCCCBCSEEEEECSSCEEEEECSTTGGGGTSCCBCCCCCHHHHHHHCT----TSCHHHHHHTHHHHHHHHHTCBCC--
T ss_pred             ccccccccccceecCCceEEEEeeecchHHHhhCeEEEeCCHHHHHHhcc----ccchhhhhhHHHHHHHHHhCCCCC--
Confidence               0011    115567889999999999999999999999999999963    78999999 999999987642110  


Q ss_pred             ccccCcCCcccccccccccchHHHHHHHHHHHHcCC-----CCCCCCCCc--------cccccccccCCccccCcchhHH
Q psy14408        570 KAVHGTQGYLPVGLFKNKENNIIREIFETSAQELGY-----PCPKDMNDR--------YVDVGFAELPGMTRYGLRFSAA  636 (720)
Q Consensus       570 ~~v~~~~G~L~va~~~~~~~~~~~q~llea~rklG~-----~~~~d~ng~--------~~~~G~~~~~~g~~~G~k~~aa  636 (720)
                            .+.+. .... .  ....+.+.++++++|+     +...++++.        ..+..+..|..+|..| |..+.
T Consensus       156 ------~~~~~-~~~~-~--~p~~~~~~~a~~~~G~~~~~~p~~~d~n~~~~~g~g~~~~~~~~G~c~~g~~~g-r~s~~  224 (504)
T 1n4w_A          156 ------DTKWF-EDTE-W--YKFARVSREQAGKAGLGTVFVPNVYDFGYMQREAAGEVPKSALATEVIYGNNHG-KQSLD  224 (504)
T ss_dssp             ------CHHHH-HHCG-G--GHHHHHHHHHHHHTTCCEEECCBSBCHHHHHHHHTTSSCCSGGGTCSTTCCSSS-BCCTT
T ss_pred             ------Ccccc-cCCC-c--chHHHHHHHHHHHcCCCCccCCcccccCccccccCccccCCcccccccccCCCC-ccCHH
Confidence                  00000 0000 1  2456778889999998     333333211        1123334455678888 88888


Q ss_pred             HHHHHHHHhcCCCeEEEcCeEEEEEEEcc-CCcEEEEEEEecCC---cEEEEEcCcEEEEccCCcchHHHHHHcC-CC
Q psy14408        637 DAYLTPIAGKRTNLYVLKRSKVTKVIIND-QNVATGVEYVNSKG---ETVRVTANKEVILTAGAIANAQLLLLSG-IG  709 (720)
Q Consensus       637 ~a~L~~Aa~e~aGVkIi~gt~VtkIl~e~-gGrAtGV~v~dt~G---~e~tIkAkK~VVVAAGa~~Sp~LLl~SG-Ig  709 (720)
                      .++|..++ ++.|++|++++.|++|++++ +++++||++.+.+|   ++.+|+|+ +||||||++.+++||++|| ++
T Consensus       225 ~~~l~~a~-~~~n~~i~~~~~V~~i~~~~~g~~~~gV~~~~~~g~~~~~~~v~A~-~VIlaaG~~~s~~lL~~Sg~ig  300 (504)
T 1n4w_A          225 KTYLAAAL-GTGKVTIQTLHQVKTIRQTKDGGYALTVEQKDTDGKLLATKEISCR-YLFLGAGSLGSTELLVRARDTG  300 (504)
T ss_dssp             TTHHHHHH-HTTSEEEEESEEEEEEEECTTSSEEEEEEEECTTCCEEEEEEEEEE-EEEECSHHHHHHHHHHHHHHTT
T ss_pred             HHHHHHHH-hcCCcEEEeCCEEEEEEECCCCCEEEEEEEeCCCCccceeEEEeeC-EEEEccCCCCCHHHHHhccccC
Confidence            88998887 45569999999999999983 24899999986456   56789997 7999999999999999999 55

>1kdg_A CDH, cellobiose dehydrogenase; GMC oxidoreductase, PHBH fold, alpha/beta structure, rossman 6-hydroxylated FAD, oxidoreductase; HET: NAG MAN 6FA EMT; 1.50A {Phanerochaete chrysosporium} SCOP: c.3.1.2 d.16.1.1 PDB: 1naa_A*

Probab=99.92  E-value=3.9e-25  Score=249.24  Aligned_cols=260  Identities=25%  Similarity=0.311  Sum_probs=175.2

Q ss_pred             CCcccEEEECCcHHHHHHHHHHHhcCCCcEEEEccCCCCCCCc--ccCCccc--c---ccc-ccc-cccccccccccccc
Q psy14408        431 GDCFDIIIVGASAAGCVLANRLSEVSSLKVLLIEAGGDTPIHS--RIPGMSS--V---LSL-SEF-DHAYLAEPSQFAGL  501 (720)
Q Consensus       431 d~eyDVVIIGSGiAGLvAA~~LAea~G~KVLVLEKG~~~~~ss--~~Pg~~~--~---~~~-~~l-~~~y~s~p~~~g~l  501 (720)
                      +.+|||||||||.+|+++|.+|+++ |++|+|||||.......  .....+.  .   ... .++ ...+.. .. .   
T Consensus         5 ~~~~D~iIvG~G~aG~~~A~~L~~~-g~~VlvlE~g~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~-~~-~---   78 (546)
T 1kdg_A            5 ATPYDYIIVGAGPGGIIAADRLSEA-GKKVLLLERGGPSTKQTGGTYVAPWATSSGLTKFDIPGLFESLFTD-SN-P---   78 (546)
T ss_dssp             -CCEEEEEECCSHHHHHHHHHHHHT-TCCEEEECSSCCCSGGGTCCCCCGGGGGGTCCTTTCGGGGGGGGTC-SC-C---
T ss_pred             CCceeEEEECcCHHHHHHHHHHHhC-CCeEEEEeCCCCCcccccccccccccccccceeeccchhHHHhhcC-CC-c---
Confidence            4578999999999999999999999 99999999996542110  0000000  0   000 000 000000 00 0   


Q ss_pred             cccccceeeccccccCCcccccchhhhcCCchhHHH---HHHhcCCCCChhHHHHHHHhhhhchhhhccccccccCcCCc
Q psy14408        502 GVRNARIKITAGKGLGGSSAVQNILYQRGTSYDYEN---FAKLGYNGWGYDETLKYFVKSEDYRSVIYNESKAVHGTQGY  578 (720)
Q Consensus       502 ~l~~~~i~~~~G~~lGGgStvN~~~~~r~s~~d~~e---Wae~g~~dWsydellpyF~s~e~~~~~sld~d~~v~~~~G~  578 (720)
                      ......+.+.+|+++||++.+|++++.+....+++.   |.    .+|.|++  ++|++++......     ......|.
T Consensus        79 ~~~~~~~~~~~g~~lGGsS~in~~~~~r~~~~d~d~~~~W~----~~w~~~~--p~~~k~e~~~~~~-----~~~~~~g~  147 (546)
T 1kdg_A           79 FWWCKDITVFAGCLVGGGTSVNGALYWYPNDGDFSSSVGWP----SSWTNHA--PYTSKLSSRLPST-----DHPSTDGQ  147 (546)
T ss_dssp             TTBCTTBSSCCBCSTTGGGGTSCCBCCCCCGGGGCGGGTCC----GGGSCCH--HHHHHHHHHSCCB-----SCCSTTSC
T ss_pred             cccccccccccceeecccccccceEEecCChHHhcCcccCc----cccCccc--HHHHHHHhcCCCC-----ccCCCCCC
Confidence            011123556789999999999999999998888876   73    3677777  8999887644210     01222232


Q ss_pred             ccccccccccchHHHHHHHHHHHHcCCCCCCCCCCc-cccccccccCCccccCcchhHHHHHHHHHHhcCCCeEEEcCeE
Q psy14408        579 LPVGLFKNKENNIIREIFETSAQELGYPCPKDMNDR-YVDVGFAELPGMTRYGLRFSAADAYLTPIAGKRTNLYVLKRSK  657 (720)
Q Consensus       579 L~va~~~~~~~~~~~q~llea~rklG~~~~~d~ng~-~~~~G~~~~~~g~~~G~k~~aa~a~L~~Aa~e~aGVkIi~gt~  657 (720)
                      .      +.  ....+.+.++++++|+......... ....|+..+...+..|.|..+..+++..++ ++.|++|++++.
T Consensus       148 ~------~~--~~~~~~~~~a~~~~G~~~~~~~~~~~~~~~g~~~~~~~~~~g~R~s~~~~~l~~~~-~~~~~~i~~~~~  218 (546)
T 1kdg_A          148 R------YL--EQSFNVVSQLLKGQGYNQATINDNPNYKDHVFGYSAFDFLNGKRAGPVATYLQTAL-ARPNFTFKTNVM  218 (546)
T ss_dssp             C------CS--CHHHHHHHHHHHTTTCEECCGGGSTTCCTTEEEECCBCEETTEECHHHHTHHHHHH-TCTTEEEECSCC
T ss_pred             c------cC--CHHHHHHHHHHHHCCCCcCCccCCcCCCCcEEeeeeeccCCCcccCHHHHHHHHHh-hCCCcEEEeCCE
Confidence            1      11  2355677788888998643211111 113455555666677888888878998887 567999999999


Q ss_pred             EEEEEEccCCcEEEEEEEec-CCc--EEEEEcCcEEEEccCCcchHHHHHHcCCCCccccccC
Q psy14408        658 VTKVIINDQNVATGVEYVNS-KGE--TVRVTANKEVILTAGAIANAQLLLLSGIGPKAHLDEV  717 (720)
Q Consensus       658 VtkIl~e~gGrAtGV~v~dt-~G~--e~tIkAkK~VVVAAGa~~Sp~LLl~SGIgpk~~L~~~  717 (720)
                      |++|+++ +++|+||++.+. +|+  +.++.+.|+||||||++++++||++|||+++++|+++
T Consensus       219 V~~i~~~-~~~~~gV~~~~~~~g~~~~~~v~~~~~VIlaaG~~~sp~lL~~sGig~~~~L~~~  280 (546)
T 1kdg_A          219 VSNVVRN-GSQILGVQTNDPTLGPNGFIPVTPKGRVILSAGAFGTSRILFQSGIGPTDMIQTV  280 (546)
T ss_dssp             EEEEEEE-TTEEEEEEESCTTSSGGGEEEEEEEEEEEECSHHHHHHHHHHHTTBSCHHHHHHH
T ss_pred             EEEEEEe-CCEEEEEEEEecCCCceeEEEEEeCCEEEEcCChhcCHHHHHHcCCCcHHHHHHh
Confidence            9999998 889999998764 354  3345444589999999999999999999999999887

>3pl8_A Pyranose 2-oxidase; substrate complex, H167A mutant, homotetramer, GMC oxidoredu PHBH fold, rossmann domain, oxidoreductase; HET: FAD MES G3F; 1.35A {Trametes ochracea} PDB: 2igo_A* 3lsm_A* 2ign_A* 3k4c_A* 1tt0_A* 2igk_A* 3k4b_A* 3lsk_A* 3bg6_A* 3lsh_A* 3lsi_A* 2igm_A* 3k4j_A* 3k4m_A* 3bg7_A* 3k4k_A* 3k4l_A* 3bly_A* 1tzl_A* 3fdy_A* ...

Probab=99.64  E-value=2.9e-16  Score=180.93  Aligned_cols=87  Identities=23%  Similarity=0.364  Sum_probs=72.1

Q ss_pred             chhHHHHHHHHH------HhcCCCeEEEcCeEEEEEEEcc-CCcEEEEEEEec-CCcEEEEEcCcEEEEccCCcchHHHH
Q psy14408        632 RFSAADAYLTPI------AGKRTNLYVLKRSKVTKVIIND-QNVATGVEYVNS-KGETVRVTANKEVILTAGAIANAQLL  703 (720)
Q Consensus       632 k~~aa~a~L~~A------a~e~aGVkIi~gt~VtkIl~e~-gGrAtGV~v~dt-~G~e~tIkAkK~VVVAAGa~~Sp~LL  703 (720)
                      ++.+...++..+      + ++.|++|++++.|++|+.++ +++|+||++.+. +|++.+|+|+ .||||+|++.++++|
T Consensus       252 r~s~~~~~l~~~~~l~~~~-~~~nv~v~~~~~V~~i~~~~~~~~v~GV~~~~~~~g~~~~i~A~-~VIlaaG~~~s~~lL  329 (623)
T 3pl8_A          252 EWSSANTVFDLQNRPNTDA-PEERFNLFPAVACERVVRNALNSEIESLHIHDLISGDRFEIKAD-VYVLTAGAVHNTQLL  329 (623)
T ss_dssp             EECCHHHHCCCCCEEETTE-EEEEEEEECSEEEEEEEECTTSSCEEEEEEEETTTCCEEEECEE-EEEECSCTTHHHHHH
T ss_pred             ccchHHhhhhhhhcchhhc-cCCCEEEEeCCEEEEEEEECCCCEEEEEEEEEcCCCcEEEEECC-EEEEcCCCcCCHHHH
Confidence            334445566544      3 44599999999999999972 348999999874 6777889997 799999999999999


Q ss_pred             HHcCCCCccccccCCCC
Q psy14408        704 LLSGIGPKAHLDEVKIP  720 (720)
Q Consensus       704 l~SGIgpk~~L~~~gip  720 (720)
                      +.||||++.+|+.+||+
T Consensus       330 ~~sgiG~~~~l~~~~i~  346 (623)
T 3pl8_A          330 VNSGFGQLGRPNPANPP  346 (623)
T ss_dssp             HTTTSSCCSSCCTTSCC
T ss_pred             HhcCCCccccccccCCC
Confidence            99999999999999985

>4at0_A 3-ketosteroid-delta4-5alpha-dehydrogenase; oxidoreductase, dehydogenase, steroid catabolism; HET: FAD; 1.60A {Rhodococcus jostii} PDB: 4at2_A*

Probab=99.64  E-value=3.9e-15  Score=166.60  Aligned_cols=64  Identities=20%  Similarity=0.331  Sum_probs=50.0

Q ss_pred             HHHHHHHhcCCCeEEEcCeEEEEEEEccCCcEEEEEEEecCCcEEEEEcCcEEEEccCCcch-HHHH
Q psy14408        638 AYLTPIAGKRTNLYVLKRSKVTKVIINDQNVATGVEYVNSKGETVRVTANKEVILTAGAIAN-AQLL  703 (720)
Q Consensus       638 a~L~~Aa~e~aGVkIi~gt~VtkIl~e~gGrAtGV~v~dt~G~e~tIkAkK~VVVAAGa~~S-p~LL  703 (720)
                      ..|.+.+ ++.|++|+++++|++|+.+++|+|+||++.+ +|+..+|+|+|.||||+|++.. +.++
T Consensus       206 ~~L~~~~-~~~Gv~i~~~t~v~~L~~~~~g~v~GV~~~~-~g~~~~i~A~k~VVlAtGG~~~n~~m~  270 (510)
T 4at0_A          206 KPLVETA-EKLGVRAEYDMRVQTLVTDDTGRVVGIVAKQ-YGKEVAVRARRGVVLATGSFAYNDKMI  270 (510)
T ss_dssp             HHHHHHH-HHTTCEEECSEEEEEEEECTTCCEEEEEEEE-TTEEEEEEEEEEEEECCCCCTTCHHHH
T ss_pred             HHHHHHH-HHcCCEEEecCEeEEEEECCCCcEEEEEEEE-CCcEEEEEeCCeEEEeCCChhhCHHHH
Confidence            3444444 3679999999999999987458999999887 5666789996469999999874 4443

>3dme_A Conserved exported protein; structural genomics, PSI-2, PROT structure initiative, northeast structural genomics consort NESG; HET: FAD TLA; 1.70A {Bordetella pertussis}

Probab=99.59  E-value=4.2e-15  Score=155.23  Aligned_cols=65  Identities=12%  Similarity=0.087  Sum_probs=48.7

Q ss_pred             HHHHHHhcCCCeEEEcCeEEEEEEEccCCcEEEEEEEecCCcEEEEEcCcEEEEccCCcchHHHHHHc-CCC
Q psy14408        639 YLTPIAGKRTNLYVLKRSKVTKVIINDQNVATGVEYVNSKGETVRVTANKEVILTAGAIANAQLLLLS-GIG  709 (720)
Q Consensus       639 ~L~~Aa~e~aGVkIi~gt~VtkIl~e~gGrAtGV~v~dt~G~e~tIkAkK~VVVAAGa~~Sp~LLl~S-GIg  709 (720)
                      .|.+++ ++.|++|+++++|++|+.+ ++.+.+|++.  +|+..+++|+ .||+|+|+ |+..|+... |+.
T Consensus       155 ~l~~~~-~~~Gv~i~~~~~v~~i~~~-~~~~~~v~~~--~g~~~~~~a~-~VV~A~G~-~s~~l~~~~~g~~  220 (369)
T 3dme_A          155 AYQGDA-ESDGAQLVFHTPLIAGRVR-PEGGFELDFG--GAEPMTLSCR-VLINAAGL-HAPGLARRIEGIP  220 (369)
T ss_dssp             HHHHHH-HHTTCEEECSCCEEEEEEC-TTSSEEEEEC--TTSCEEEEEE-EEEECCGG-GHHHHHHTEETSC
T ss_pred             HHHHHH-HHCCCEEECCCEEEEEEEc-CCceEEEEEC--CCceeEEEeC-EEEECCCc-chHHHHHHhcCCC
Confidence            344444 4789999999999999987 4443445543  3655689997 59999997 688999888 875

>3nyc_A D-arginine dehydrogenase; FAD, imino-arginine, oxidoreductas; HET: FAD IAR; 1.06A {Pseudomonas aeruginosa} PDB: 3nye_A* 3nyf_A* 3sm8_A*

Probab=99.57  E-value=1.6e-14  Score=152.05  Aligned_cols=61  Identities=18%  Similarity=0.081  Sum_probs=45.6

Q ss_pred             HHHHHHhcCCCeEEEcCeEEEEEEEccCCcEEEEEEEecCCcEEEEEcCcEEEEccCCcchHHHHHHcCCC
Q psy14408        639 YLTPIAGKRTNLYVLKRSKVTKVIINDQNVATGVEYVNSKGETVRVTANKEVILTAGAIANAQLLLLSGIG  709 (720)
Q Consensus       639 ~L~~Aa~e~aGVkIi~gt~VtkIl~e~gGrAtGV~v~dt~G~e~tIkAkK~VVVAAGa~~Sp~LLl~SGIg  709 (720)
                      .|.+++ ++.|++|+++++|++|+.+ +++ ++|++.  +|   +|+|+ .||+|+|+ |+..|+...|+.
T Consensus       159 ~l~~~a-~~~Gv~i~~~~~V~~i~~~-~~~-~~V~t~--~g---~i~a~-~VV~A~G~-~s~~l~~~~g~~  219 (381)
T 3nyc_A          159 GYLRGI-RRNQGQVLCNHEALEIRRV-DGA-WEVRCD--AG---SYRAA-VLVNAAGA-WCDAIAGLAGVR  219 (381)
T ss_dssp             HHHHHH-HHTTCEEESSCCCCEEEEE-TTE-EEEECS--SE---EEEES-EEEECCGG-GHHHHHHHHTCC
T ss_pred             HHHHHH-HHCCCEEEcCCEEEEEEEe-CCe-EEEEeC--CC---EEEcC-EEEECCCh-hHHHHHHHhCCC
Confidence            344444 4789999999999999987 554 445432  23   78998 59999997 788888888875

>1y56_B Sarcosine oxidase; dehydrogenase, protein-protein complex, oxidoreductase; HET: FAD FMN ATP CXS; 2.86A {Pyrococcus horikoshii}

Probab=99.55  E-value=6.8e-14  Score=148.40  Aligned_cols=62  Identities=21%  Similarity=0.244  Sum_probs=47.8

Q ss_pred             HHHHHHhcCCCeEEEcCeEEEEEEEccCCcEEEEEEEecCCcEEEEEcCcEEEEccCCcchHHHHHHcCCC
Q psy14408        639 YLTPIAGKRTNLYVLKRSKVTKVIINDQNVATGVEYVNSKGETVRVTANKEVILTAGAIANAQLLLLSGIG  709 (720)
Q Consensus       639 ~L~~Aa~e~aGVkIi~gt~VtkIl~e~gGrAtGV~v~dt~G~e~tIkAkK~VVVAAGa~~Sp~LLl~SGIg  709 (720)
                      .|.+.+ ++.|++|+++++|++|+.+ ++++.||++.+  |   +++|+ .||+|+|+ ++..++...|+.
T Consensus       154 ~l~~~~-~~~Gv~i~~~~~v~~i~~~-~~~v~gv~~~~--g---~i~a~-~VV~A~G~-~s~~l~~~~g~~  215 (382)
T 1y56_B          154 AFAVKA-KEYGAKLLEYTEVKGFLIE-NNEIKGVKTNK--G---IIKTG-IVVNATNA-WANLINAMAGIK  215 (382)
T ss_dssp             HHHHHH-HHTTCEEECSCCEEEEEES-SSBEEEEEETT--E---EEECS-EEEECCGG-GHHHHHHHHTCC
T ss_pred             HHHHHH-HHCCCEEECCceEEEEEEE-CCEEEEEEECC--c---EEECC-EEEECcch-hHHHHHHHcCCC
Confidence            344444 4789999999999999988 77888887532  3   69998 59999997 577777777764

>2gag_B Heterotetrameric sarcosine oxidase beta-subunit; flavoenzyme, electron transfer, folate-ME enzyme, oxidoreductase; HET: NAD FAD FMN; 1.85A {Stenotrophomonas maltophilia} PDB: 2gah_B* 1x31_B* 1vrq_B* 3ad7_B* 3ad8_B* 3ad9_B* 3ada_B*

Probab=99.54  E-value=1e-13  Score=147.73  Aligned_cols=62  Identities=21%  Similarity=0.327  Sum_probs=47.5

Q ss_pred             HHHHHHhcCCCeEEEcCeEEEEEEEccCCcEEEEEEEecCCcEEEEEcCcEEEEccCCcchHHHHHHcCCC
Q psy14408        639 YLTPIAGKRTNLYVLKRSKVTKVIINDQNVATGVEYVNSKGETVRVTANKEVILTAGAIANAQLLLLSGIG  709 (720)
Q Consensus       639 ~L~~Aa~e~aGVkIi~gt~VtkIl~e~gGrAtGV~v~dt~G~e~tIkAkK~VVVAAGa~~Sp~LLl~SGIg  709 (720)
                      .|.+.+ ++.|++|+++++|++|+.+ ++++++|++.+  |   +++|+ .||+|+|+ ++..++...|+.
T Consensus       179 ~l~~~~-~~~g~~i~~~~~v~~i~~~-~~~~~~v~~~~--g---~~~a~-~vV~a~G~-~s~~l~~~~g~~  240 (405)
T 2gag_B          179 AFARKA-NEMGVDIIQNCEVTGFIKD-GEKVTGVKTTR--G---TIHAG-KVALAGAG-HSSVLAEMAGFE  240 (405)
T ss_dssp             HHHHHH-HHTTCEEECSCCEEEEEES-SSBEEEEEETT--C---CEEEE-EEEECCGG-GHHHHHHHHTCC
T ss_pred             HHHHHH-HHCCCEEEcCCeEEEEEEe-CCEEEEEEeCC--c---eEECC-EEEECCch-hHHHHHHHcCCC
Confidence            344444 4789999999999999988 77788877533  4   58897 59999997 566777777764

>1qo8_A Flavocytochrome C3 fumarate reductase; oxidoreductase; HET: HEM FAD; 2.15A {Shewanella frigidimarina} SCOP: a.138.1.3 c.3.1.4 d.168.1.1

Probab=99.49  E-value=2.3e-13  Score=154.32  Aligned_cols=61  Identities=20%  Similarity=0.255  Sum_probs=49.3

Q ss_pred             HHHHHHHhcCCCeEEEcCeEEEEEEEccC-CcEEEEEEEecCCcEEEEEcCcEEEEccCCcchHH
Q psy14408        638 AYLTPIAGKRTNLYVLKRSKVTKVIINDQ-NVATGVEYVNSKGETVRVTANKEVILTAGAIANAQ  701 (720)
Q Consensus       638 a~L~~Aa~e~aGVkIi~gt~VtkIl~e~g-GrAtGV~v~dt~G~e~tIkAkK~VVVAAGa~~Sp~  701 (720)
                      ..|.+.+ ++.|++|+++++|++|+.+ + ++|+||++.+.+|+..+|+|+ .||+|+|++....
T Consensus       254 ~~L~~~~-~~~gv~i~~~~~v~~l~~~-~~g~v~Gv~~~~~~g~~~~i~A~-~VVlAtGg~s~~~  315 (566)
T 1qo8_A          254 DTLRKAA-KEQGIDTRLNSRVVKLVVN-DDHSVVGAVVHGKHTGYYMIGAK-SVVLATGGYGMNK  315 (566)
T ss_dssp             HHHHHHH-HHTTCCEECSEEEEEEEEC-TTSBEEEEEEEETTTEEEEEEEE-EEEECCCCCTTCH
T ss_pred             HHHHHHH-HhcCCEEEeCCEEEEEEEC-CCCcEEEEEEEeCCCcEEEEEcC-EEEEecCCcccCH
Confidence            4444444 4779999999999999998 6 899999998656766789996 6999999987643

>3dje_A Fructosyl amine: oxygen oxidoreductase; fructosyl-amino acid, amadoriase, deglycation, fructosamine oxidase; HET: MSE FAD FSA EPE; 1.60A {Aspergillus fumigatus} PDB: 3djd_A*

Probab=99.49  E-value=1.5e-13  Score=149.13  Aligned_cols=58  Identities=24%  Similarity=0.308  Sum_probs=45.0

Q ss_pred             HHHHHHhcCCCeEEEcCe---EEEEEEEccCCcEEEEEEEecCCcEEEEEcCcEEEEccCCcchHHHHH
Q psy14408        639 YLTPIAGKRTNLYVLKRS---KVTKVIINDQNVATGVEYVNSKGETVRVTANKEVILTAGAIANAQLLL  704 (720)
Q Consensus       639 ~L~~Aa~e~aGVkIi~gt---~VtkIl~e~gGrAtGV~v~dt~G~e~tIkAkK~VVVAAGa~~Sp~LLl  704 (720)
                      .|.+++ ++.|++|++++   +|++|+.+ +++++||++.+  |+  +|+|+ .||+|+|+ ++..|+.
T Consensus       166 ~L~~~a-~~~Gv~i~~~t~~~~V~~i~~~-~~~v~gV~t~~--G~--~i~Ad-~VV~AtG~-~s~~l~~  226 (438)
T 3dje_A          166 AAAREA-QRMGVKFVTGTPQGRVVTLIFE-NNDVKGAVTAD--GK--IWRAE-RTFLCAGA-SAGQFLD  226 (438)
T ss_dssp             HHHHHH-HHTTCEEEESTTTTCEEEEEEE-TTEEEEEEETT--TE--EEECS-EEEECCGG-GGGGTSC
T ss_pred             HHHHHH-HhcCCEEEeCCcCceEEEEEec-CCeEEEEEECC--CC--EEECC-EEEECCCC-ChhhhcC
Confidence            444444 47899999999   99999998 88888888754  53  78998 59999998 4656543

>1y0p_A Fumarate reductase flavoprotein subunit; flavocytochrome, mesaconate, oxidoreductase; HET: HEM FAD; 1.50A {Shewanella frigidimarina} SCOP: a.138.1.3 c.3.1.4 d.168.1.1 PDB: 1qjd_A* 2b7s_A* 1jry_A* 2b7r_A* 1ksu_A* 1jrz_A* 1jrx_A* 1m64_A* 1p2h_A* 1p2e_A* 1kss_A* 1e39_A* 1q9i_A* 1lj1_A*

Probab=99.49  E-value=5.1e-13  Score=151.52  Aligned_cols=61  Identities=20%  Similarity=0.215  Sum_probs=49.0

Q ss_pred             HHHHHHHhcCCCeEEEcCeEEEEEEEccC-CcEEEEEEEecCCcEEEEEcCcEEEEccCCcchHH
Q psy14408        638 AYLTPIAGKRTNLYVLKRSKVTKVIINDQ-NVATGVEYVNSKGETVRVTANKEVILTAGAIANAQ  701 (720)
Q Consensus       638 a~L~~Aa~e~aGVkIi~gt~VtkIl~e~g-GrAtGV~v~dt~G~e~tIkAkK~VVVAAGa~~Sp~  701 (720)
                      ..|.+.+ ++.|++|+++++|++|+.+ + ++|+||++.+.+|+..+|+|+ .||+|+|++....
T Consensus       259 ~~L~~~~-~~~gv~i~~~~~v~~l~~~-~~g~v~Gv~~~~~~g~~~~i~a~-~VVlAtGg~~~n~  320 (571)
T 1y0p_A          259 QVLYDNA-VKRNIDLRMNTRGIEVLKD-DKGTVKGILVKGMYKGYYWVKAD-AVILATGGFAKNN  320 (571)
T ss_dssp             HHHHHHH-HHTTCEEESSEEEEEEEEC-TTSCEEEEEEEETTTEEEEEECS-EEEECCCCCTTCH
T ss_pred             HHHHHHH-HhcCCEEEeCCEeeEeEEc-CCCeEEEEEEEeCCCcEEEEECC-eEEEeCCCcccCH
Confidence            4444444 4789999999999999998 5 899999998656766789997 5999999986533

>2oln_A NIKD protein; flavoprotein, rossmann fold, oxidoreductase; HET: FAD; 1.15A {Streptomyces tendae} PDB: 2olo_A* 3hzl_A* 2q6u_A*

Probab=99.46  E-value=8.2e-13  Score=141.26  Aligned_cols=35  Identities=26%  Similarity=0.462  Sum_probs=33.0

Q ss_pred             cccEEEECCcHHHHHHHHHHHhcCCCcEEEEccCCC
Q psy14408        433 CFDIIIVGASAAGCVLANRLSEVSSLKVLLIEAGGD  468 (720)
Q Consensus       433 eyDVVIIGSGiAGLvAA~~LAea~G~KVLVLEKG~~  468 (720)
                      ++||||||||++|+++|++|+++ |++|+||||+..
T Consensus         4 ~~DVvIIGaG~~Gl~~A~~La~~-G~~V~vlE~~~~   38 (397)
T 2oln_A            4 SYDVVVVGGGPVGLATAWQVAER-GHRVLVLERHTF   38 (397)
T ss_dssp             EEEEEEECCSHHHHHHHHHHHHT-TCCEEEEESSCT
T ss_pred             cCCEEEECCCHHHHHHHHHHHHC-CCeEEEEeCCCC
Confidence            58999999999999999999999 999999999854

>2gf3_A MSOX, monomeric sarcosine oxidase; flavoprotein oxidase, inhibitor 2-furoic acid, oxidoreductas; HET: FAD; 1.30A {Bacillus SP} SCOP: c.3.1.2 d.16.1.3 PDB: 1el7_A* 1el8_A* 1el9_A* 1eli_A* 1l9e_A* 2a89_A* 2gb0_A* 1el5_A* 3qse_A* 3qsm_A* 3qss_A* 3bhk_A* 3bhf_A* 3m12_A* 3m13_A* 3m0o_A* 1l9c_A* 1l9d_A* 1zov_A*

Probab=99.45  E-value=8.1e-13  Score=139.94  Aligned_cols=36  Identities=33%  Similarity=0.553  Sum_probs=33.4

Q ss_pred             cccEEEECCcHHHHHHHHHHHhcCCCcEEEEccCCCC
Q psy14408        433 CFDIIIVGASAAGCVLANRLSEVSSLKVLLIEAGGDT  469 (720)
Q Consensus       433 eyDVVIIGSGiAGLvAA~~LAea~G~KVLVLEKG~~~  469 (720)
                      ++||||||||++|+++|++|+++ |++|+||||+...
T Consensus         3 ~~dvvIIGaG~~Gl~~A~~La~~-G~~V~vie~~~~~   38 (389)
T 2gf3_A            3 HFDVIVVGAGSMGMAAGYQLAKQ-GVKTLLVDAFDPP   38 (389)
T ss_dssp             CEEEEEECCSHHHHHHHHHHHHT-TCCEEEECSSCSS
T ss_pred             cCCEEEECCCHHHHHHHHHHHhC-CCeEEEEeCCCCC
Confidence            57999999999999999999999 9999999998543

>3axb_A Putative oxidoreductase; dinucleotide-binding fold; HET: FAD; 1.92A {Aeropyrum pernix} PDB: 3vqr_A*

Probab=99.45  E-value=2.1e-13  Score=148.63  Aligned_cols=35  Identities=37%  Similarity=0.463  Sum_probs=32.8

Q ss_pred             CCcccEEEECCcHHHHHHHHHHHhcCC-CcEEEEccC
Q psy14408        431 GDCFDIIIVGASAAGCVLANRLSEVSS-LKVLLIEAG  466 (720)
Q Consensus       431 d~eyDVVIIGSGiAGLvAA~~LAea~G-~KVLVLEKG  466 (720)
                      |.++||||||||++|+++|++|+++ | ++|+||||+
T Consensus        21 m~~~dVvIIGgGiaGls~A~~La~~-G~~~V~vlE~~   56 (448)
T 3axb_A           21 MPRFDYVVVGAGVVGLAAAYYLKVW-SGGSVLVVDAG   56 (448)
T ss_dssp             CCEEEEEEECCSHHHHHHHHHHHHH-HCSCEEEEESS
T ss_pred             CCcCCEEEECcCHHHHHHHHHHHhC-CCCcEEEEccC
Confidence            4578999999999999999999999 9 999999994

>4dgk_A Phytoene dehydrogenase; the FAD/NAD(P)-binding rossmann fold, oxidoreductase; 2.35A {Pantoea ananatis}

Probab=99.44  E-value=2.6e-13  Score=149.47  Aligned_cols=61  Identities=16%  Similarity=0.148  Sum_probs=42.4

Q ss_pred             HHHHHHHhcCCCeEEEcCeEEEEEEEccCCcEEEEEEEecCCcEEEEEcCcEEEEccCCcchHHHHHH
Q psy14408        638 AYLTPIAGKRTNLYVLKRSKVTKVIINDQNVATGVEYVNSKGETVRVTANKEVILTAGAIANAQLLLL  705 (720)
Q Consensus       638 a~L~~Aa~e~aGVkIi~gt~VtkIl~e~gGrAtGV~v~dt~G~e~tIkAkK~VVVAAGa~~Sp~LLl~  705 (720)
                      ..|.+.+ ++.|++|+++++|++|+++ +++++||++.+  |+  ++.|+ .||++++...+...|+.
T Consensus       225 ~aL~~~~-~~~Gg~I~~~~~V~~I~~~-~~~~~gV~~~~--g~--~~~ad-~VV~~a~~~~~~~~Ll~  285 (501)
T 4dgk_A          225 QGMIKLF-QDLGGEVVLNARVSHMETT-GNKIEAVHLED--GR--RFLTQ-AVASNADVVHTYRDLLS  285 (501)
T ss_dssp             HHHHHHH-HHTTCEEECSCCEEEEEEE-TTEEEEEEETT--SC--EEECS-CEEECCC----------
T ss_pred             HHHHHHH-HHhCCceeeecceeEEEee-CCeEEEEEecC--Cc--EEEcC-EEEECCCHHHHHHHhcc
Confidence            3444444 4889999999999999999 99999999876  64  68998 49999998777655543

>3da1_A Glycerol-3-phosphate dehydrogenase; NESG BHR167 Q9KDW6 X-RAY, structural genomics, PSI-2, protein structure initiative; HET: FAD; 2.70A {Bacillus halodurans}

Probab=99.44  E-value=7.8e-13  Score=150.34  Aligned_cols=67  Identities=19%  Similarity=0.135  Sum_probs=55.3

Q ss_pred             HHHHHHHhcCCCeEEEcCeEEEEEEEccCCcEEEEEEEec-CCcEEEEEcCcEEEEccCCcchHHHHHHcCCC
Q psy14408        638 AYLTPIAGKRTNLYVLKRSKVTKVIINDQNVATGVEYVNS-KGETVRVTANKEVILTAGAIANAQLLLLSGIG  709 (720)
Q Consensus       638 a~L~~Aa~e~aGVkIi~gt~VtkIl~e~gGrAtGV~v~dt-~G~e~tIkAkK~VVVAAGa~~Sp~LLl~SGIg  709 (720)
                      .++..+.  +.|++|+++++|++|+.+ +++++||++.+. +|+..+|+|+ .||+|+|+ |+..++...|+.
T Consensus       175 ~L~~~a~--~~G~~i~~~~~V~~l~~~-~g~v~gV~~~d~~tg~~~~i~A~-~VV~AaG~-~s~~l~~~~g~~  242 (561)
T 3da1_A          175 EIMKEAV--ARGAVALNYMKVESFIYD-QGKVVGVVAKDRLTDTTHTIYAK-KVVNAAGP-WVDTLREKDRSK  242 (561)
T ss_dssp             HHHHHHH--HTTCEEEESEEEEEEEEE-TTEEEEEEEEETTTCCEEEEEEE-EEEECCGG-GHHHHHHTTTCC
T ss_pred             HHHHHHH--HcCCEEEcCCEEEEEEEc-CCeEEEEEEEEcCCCceEEEECC-EEEECCCc-chHHHHHhcCCC
Confidence            3444444  789999999999999998 889999999874 5666789997 59999996 788888888876

>2rgh_A Alpha-glycerophosphate oxidase; flavoprotein oxidase, oxidoreductase; HET: FAD; 2.30A {Streptococcus SP} PDB: 2rgo_A*

Probab=99.43  E-value=9.8e-13  Score=149.83  Aligned_cols=67  Identities=18%  Similarity=0.210  Sum_probs=53.3

Q ss_pred             HHHHHHHhcCCCeEEEcCeEEEEEEEccCCcEEEEEEEec-CCcEEEEEcCcEEEEccCCcchHHHHHHcCCC
Q psy14408        638 AYLTPIAGKRTNLYVLKRSKVTKVIINDQNVATGVEYVNS-KGETVRVTANKEVILTAGAIANAQLLLLSGIG  709 (720)
Q Consensus       638 a~L~~Aa~e~aGVkIi~gt~VtkIl~e~gGrAtGV~v~dt-~G~e~tIkAkK~VVVAAGa~~Sp~LLl~SGIg  709 (720)
                      .++..+.  +.|++|+++++|++|+.+ +++++||++.+. +|+..+|+|+ .||+|+|+ |+..++...|+.
T Consensus       193 ~l~~~a~--~~Ga~i~~~t~V~~l~~~-~~~v~gV~~~d~~tg~~~~i~A~-~VV~AaG~-ws~~l~~~~g~~  260 (571)
T 2rgh_A          193 DNIKKAA--EDGAYLVSKMKAVGFLYE-GDQIVGVKARDLLTDEVIEIKAK-LVINTSGP-WVDKVRNLNFTR  260 (571)
T ss_dssp             HHHHHHH--HTTCEEESSEEEEEEEEE-TTEEEEEEEEETTTCCEEEEEBS-CEEECCGG-GHHHHHTTCCSS
T ss_pred             HHHHHHH--HcCCeEEeccEEEEEEEe-CCEEEEEEEEEcCCCCEEEEEcC-EEEECCCh-hHHHHHHhhccC
Confidence            4455554  789999999999999998 788999998864 4555689997 59999997 688887766653

>1pj5_A N,N-dimethylglycine oxidase; channelling, FAD binding, folate binding, amine oxidase, oxidoreductase; HET: FAD; 1.61A {Arthrobacter globiformis} SCOP: b.44.2.1 c.3.1.2 d.16.1.5 d.250.1.1 PDB: 1pj6_A* 1pj7_A* 3gsi_A*

Probab=99.42  E-value=1.8e-12  Score=153.29  Aligned_cols=62  Identities=21%  Similarity=0.244  Sum_probs=47.6

Q ss_pred             HHHHHHhcCCCeEEEcCeEEEEEEEccCCcEEEEEEEecCCcEEEEEcCcEEEEccCCcchHHHHHHcCCC
Q psy14408        639 YLTPIAGKRTNLYVLKRSKVTKVIINDQNVATGVEYVNSKGETVRVTANKEVILTAGAIANAQLLLLSGIG  709 (720)
Q Consensus       639 ~L~~Aa~e~aGVkIi~gt~VtkIl~e~gGrAtGV~v~dt~G~e~tIkAkK~VVVAAGa~~Sp~LLl~SGIg  709 (720)
                      .|.+.+ ++.|++|+++++|++|+.+ ++++++|++.+  |   +|+|+ .||+|+|+ ++..++...|+.
T Consensus       156 ~L~~~a-~~~Gv~i~~~t~V~~i~~~-~~~v~~V~t~~--G---~i~Ad-~VV~AaG~-~s~~l~~~~g~~  217 (830)
T 1pj5_A          156 LLIKRT-ESAGVTYRGSTTVTGIEQS-GGRVTGVQTAD--G---VIPAD-IVVSCAGF-WGAKIGAMIGMA  217 (830)
T ss_dssp             HHHHHH-HHTTCEEECSCCEEEEEEE-TTEEEEEEETT--E---EEECS-EEEECCGG-GHHHHHHTTTCC
T ss_pred             HHHHHH-HHcCCEEECCceEEEEEEe-CCEEEEEEECC--c---EEECC-EEEECCcc-chHHHHHHhCCC
Confidence            344444 3789999999999999987 77777876533  3   69998 59999997 677887777753

>2bs2_A Quinol-fumarate reductase flavoprotein subunit A; 2Fe-2S, 3Fe-4S, 4Fe-4S, citric acid cycle, dihaem cytochrome B; HET: FAD HEM LMT; 1.78A {Wolinella succinogenes} SCOP: a.7.3.1 c.3.1.4 d.168.1.1 PDB: 2bs3_A* 1e7p_A* 2bs4_A* 1qlb_A*

Probab=99.40  E-value=5.1e-12  Score=146.66  Aligned_cols=50  Identities=12%  Similarity=0.264  Sum_probs=43.9

Q ss_pred             CCCeEEEcCeEEEEEEEccCCcEEEEEEEec-CCcEEEEEcCcEEEEccCCcc
Q psy14408        647 RTNLYVLKRSKVTKVIINDQNVATGVEYVNS-KGETVRVTANKEVILTAGAIA  698 (720)
Q Consensus       647 ~aGVkIi~gt~VtkIl~e~gGrAtGV~v~dt-~G~e~tIkAkK~VVVAAGa~~  698 (720)
                      +.|++|++++.|++|+.+ +|+|.||.+.++ +|+...|+|+ .||+|+|++.
T Consensus       170 ~~gv~i~~~~~v~~L~~~-~g~v~Gv~~~~~~~G~~~~i~A~-~VVlATGG~~  220 (660)
T 2bs2_A          170 KLGVSIQDRKEAIALIHQ-DGKCYGAVVRDLVTGDIIAYVAK-GTLIATGGYG  220 (660)
T ss_dssp             HHTCEEECSEEEEEEEEE-TTEEEEEEEEETTTCCEEEEECS-EEEECCCCCG
T ss_pred             hCCCEEEECcEEEEEEec-CCEEEEEEEEECCCCcEEEEEcC-EEEEccCcch
Confidence            679999999999999988 889999998764 5766789997 6999999986

>2h88_A Succinate dehydrogenase flavoprotein subunit; complex II, membrane protein, heme protein, iron sulfur PROT cytochrome B, oxidoreductase; HET: FAD BHG HEM UNL; 1.74A {Gallus gallus} PDB: 1yq4_A* 1yq3_A* 2fbw_A* 2h89_A* 2wqy_A* 1zoy_A* 1zp0_A* 3abv_A* 3ae1_A* 3ae2_A* 3ae3_A* 3ae4_A* 3ae5_A* 3ae6_A* 3ae7_A* 3ae8_A* 3ae9_A* 3aea_A* 3aeb_A* 3aec_A* ...

Probab=99.40  E-value=6.9e-12  Score=144.65  Aligned_cols=58  Identities=14%  Similarity=0.180  Sum_probs=47.6

Q ss_pred             HHHHHHhcCCCeEEEcCeEEEEEEEccCCcEEEEEEEe-cCCcEEEEEcCcEEEEccCCcch
Q psy14408        639 YLTPIAGKRTNLYVLKRSKVTKVIINDQNVATGVEYVN-SKGETVRVTANKEVILTAGAIAN  699 (720)
Q Consensus       639 ~L~~Aa~e~aGVkIi~gt~VtkIl~e~gGrAtGV~v~d-t~G~e~tIkAkK~VVVAAGa~~S  699 (720)
                      .|...+ ++.|++|++++.|++|+.+ +|+|.||.+.+ .+|+...|+|+ .||+|+|++..
T Consensus       160 ~L~~~~-~~~gv~i~~~~~v~~Li~~-~g~v~Gv~~~~~~~G~~~~i~A~-~VVlATGG~~~  218 (621)
T 2h88_A          160 TLYGRS-LRYDTSYFVEYFALDLLME-NGECRGVIALCIEDGTIHRFRAK-NTVIATGGYGR  218 (621)
T ss_dssp             HHHHHH-TTSCCEEEETEEEEEEEEE-TTEEEEEEEEETTTCCEEEEEEE-EEEECCCCCGG
T ss_pred             HHHHHH-HhCCCEEEEceEEEEEEEE-CCEEEEEEEEEcCCCcEEEEEcC-eEEECCCcccc
Confidence            344444 4789999999999999998 88999999886 36777789996 69999999763

>2wdq_A Succinate dehydrogenase flavoprotein subunit; succinate dehydrogenase activity, cell inner membrane, trica acid cycle; HET: FAD HEM CBE; 2.40A {Escherichia coli} PDB: 1nen_A* 2acz_A* 1nek_A* 2wdr_A* 2wdv_A* 2wp9_A* 2ws3_A* 2wu2_A* 2wu5_A*

Probab=99.40  E-value=7e-12  Score=143.43  Aligned_cols=58  Identities=16%  Similarity=0.219  Sum_probs=45.9

Q ss_pred             HHHHHHhcCCCeEEEcCeEEEEEEEccCCcEEEEEEEec-CCcEEEEEcCcEEEEccCCcc
Q psy14408        639 YLTPIAGKRTNLYVLKRSKVTKVIINDQNVATGVEYVNS-KGETVRVTANKEVILTAGAIA  698 (720)
Q Consensus       639 ~L~~Aa~e~aGVkIi~gt~VtkIl~e~gGrAtGV~v~dt-~G~e~tIkAkK~VVVAAGa~~  698 (720)
                      .|.+.+ ++.|++|++++.|++|+.+++++|.||.+.+. +|+..+|+|+ .||+|+|++.
T Consensus       148 ~L~~~~-~~~gv~i~~~~~v~~L~~~~~g~v~Gv~~~~~~~g~~~~i~A~-~VVlAtGg~~  206 (588)
T 2wdq_A          148 TLYQQN-LKNHTTIFSEWYALDLVKNQDGAVVGCTALCIETGEVVYFKAR-ATVLATGGAG  206 (588)
T ss_dssp             HHHHHH-HHTTCEEEETEEEEEEEECTTSCEEEEEEEETTTCCEEEEEEE-EEEECCCCCG
T ss_pred             HHHHHH-HhCCCEEEeCcEEEEEEECCCCEEEEEEEEEcCCCeEEEEEcC-EEEECCCCCc
Confidence            343443 36799999999999999853678999998863 5766789996 6999999965

>2uzz_A N-methyl-L-tryptophan oxidase; N-methyltryptophan oxidase (MTOX), oxidative demethylation of N-methyl-L-tryptophan, FAD, flavoenzyme; HET: FAD; 3.2A {Escherichia coli}

Probab=99.38  E-value=3.3e-12  Score=134.71  Aligned_cols=36  Identities=25%  Similarity=0.452  Sum_probs=33.3

Q ss_pred             cccEEEECCcHHHHHHHHHHHhcCCCcEEEEccCCCC
Q psy14408        433 CFDIIIVGASAAGCVLANRLSEVSSLKVLLIEAGGDT  469 (720)
Q Consensus       433 eyDVVIIGSGiAGLvAA~~LAea~G~KVLVLEKG~~~  469 (720)
                      ++||||||||++|+++|++|+++ |++|+||||+...
T Consensus         2 ~~dvvIIG~Gi~Gl~~A~~La~~-G~~V~vle~~~~~   37 (372)
T 2uzz_A            2 KYDLIIIGSGSVGAAAGYYATRA-GLNVLMTDAHMPP   37 (372)
T ss_dssp             CEEEEESCTTHHHHHHHHHHHHT-TCCEEEECSSCSS
T ss_pred             CCCEEEECCCHHHHHHHHHHHHC-CCeEEEEecCCCC
Confidence            57999999999999999999999 9999999998543

>1d4d_A Flavocytochrome C fumarate reductase; oxidoreductase; HET: HEM FAD; 2.50A {Shewanella oneidensis} SCOP: a.138.1.3 c.3.1.4 d.168.1.1 PDB: 1d4e_A* 1d4c_A*

Probab=99.37  E-value=1.8e-11  Score=139.27  Aligned_cols=64  Identities=19%  Similarity=0.200  Sum_probs=49.6

Q ss_pred             HHHHHHHhcCCCeEEEcCeEEEEEEEccC-CcEEEEEEEecCCcEEEEEcCcEEEEccCCcch-HHHHH
Q psy14408        638 AYLTPIAGKRTNLYVLKRSKVTKVIINDQ-NVATGVEYVNSKGETVRVTANKEVILTAGAIAN-AQLLL  704 (720)
Q Consensus       638 a~L~~Aa~e~aGVkIi~gt~VtkIl~e~g-GrAtGV~v~dt~G~e~tIkAkK~VVVAAGa~~S-p~LLl  704 (720)
                      ..|.+.+ ++.|++|+++++|++|+.+ + ++|+||++.+.+|+..+|+|+ .||+|+|++.. ..++.
T Consensus       259 ~~L~~~~-~~~gv~i~~~t~v~~l~~~-~~g~v~GV~~~~~~G~~~~i~A~-~VVlAtGg~~~~~~~~~  324 (572)
T 1d4d_A          259 QVLWDNA-VKRGTDIRLNSRVVRILED-ASGKVTGVLVKGEYTGYYVIKAD-AVVIAAGGFAKNNERVS  324 (572)
T ss_dssp             HHHHHHH-HHTTCEEESSEEEEEEEEC---CCEEEEEEEETTTEEEEEECS-EEEECCCCCTTCHHHHH
T ss_pred             HHHHHHH-HHcCCeEEecCEEEEEEEC-CCCeEEEEEEEeCCCcEEEEEcC-EEEEeCCCCccCHHHHH
Confidence            3444444 4779999999999999988 6 899999998656766789996 69999999864 34443

>1ryi_A Glycine oxidase; flavoprotein, protein-inhibitor complex, oxidoreductase; HET: FAD; 1.80A {Bacillus subtilis} SCOP: c.3.1.2 d.16.1.3 PDB: 3if9_A* 1ng4_A* 1ng3_A*

Probab=99.34  E-value=1.3e-12  Score=138.20  Aligned_cols=62  Identities=18%  Similarity=0.188  Sum_probs=45.0

Q ss_pred             HHHHHHHhcCCCeEEEcCeEEEEEEEccCCcEEEEEEEecCCcEEEEEcCcEEEEccCCcchHHHHHHcCCC
Q psy14408        638 AYLTPIAGKRTNLYVLKRSKVTKVIINDQNVATGVEYVNSKGETVRVTANKEVILTAGAIANAQLLLLSGIG  709 (720)
Q Consensus       638 a~L~~Aa~e~aGVkIi~gt~VtkIl~e~gGrAtGV~v~dt~G~e~tIkAkK~VVVAAGa~~Sp~LLl~SGIg  709 (720)
                      ..|.+.+ ++.|++|+++++|++|+.+ ++++ +|++.  +|   +++|+ .||+|+|+ ++..++...|+.
T Consensus       168 ~~l~~~~-~~~g~~i~~~~~v~~i~~~-~~~~-~v~~~--~g---~~~a~-~vV~A~G~-~s~~l~~~~~~~  229 (382)
T 1ryi_A          168 KAYVKAA-KMLGAEIFEHTPVLHVERD-GEAL-FIKTP--SG---DVWAN-HVVVASGV-WSGMFFKQLGLN  229 (382)
T ss_dssp             HHHHHHH-HHTTCEEETTCCCCEEECS-SSSE-EEEET--TE---EEEEE-EEEECCGG-GTHHHHHHTTCC
T ss_pred             HHHHHHH-HHCCCEEEcCCcEEEEEEE-CCEE-EEEcC--Cc---eEEcC-EEEECCCh-hHHHHHHhcCCC
Confidence            3444444 3679999999999999887 6665 55542  23   68897 59999997 577777777653

>3ps9_A TRNA 5-methylaminomethyl-2-thiouridine biosynthes bifunctional protein MNMC; rossmann fold, oxidase, methyl transferase, FAD; HET: FAD SAM; 2.54A {Escherichia coli} PDB: 3awi_A*

Probab=99.34  E-value=2e-12  Score=149.53  Aligned_cols=36  Identities=22%  Similarity=0.195  Sum_probs=33.1

Q ss_pred             cccEEEECCcHHHHHHHHHHHhcCCCcEEEEccCCCC
Q psy14408        433 CFDIIIVGASAAGCVLANRLSEVSSLKVLLIEAGGDT  469 (720)
Q Consensus       433 eyDVVIIGSGiAGLvAA~~LAea~G~KVLVLEKG~~~  469 (720)
                      .+||||||||++|++||++|+++ |++|+||||+...
T Consensus       272 ~~DVvIIGgGiaGlsaA~~La~~-G~~V~vlEk~~~~  307 (676)
T 3ps9_A          272 KREAAIIGGGIASALLSLALLRR-GWQVTLYCADEAP  307 (676)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHTT-TCEEEEEESSSSS
T ss_pred             CCCEEEECCCHHHHHHHHHHHHC-CCeEEEEeCCCcc
Confidence            48999999999999999999999 9999999997543

>2qcu_A Aerobic glycerol-3-phosphate dehydrogenase; glycerol-3-phoshate dehydrogenase, oxidoreductase; HET: BOG FAD TAM; 1.75A {Escherichia coli} PDB: 2r45_A* 2r46_A* 2r4e_A* 2r4j_A*

Probab=99.33  E-value=1.8e-11  Score=136.61  Aligned_cols=62  Identities=19%  Similarity=0.078  Sum_probs=48.1

Q ss_pred             HHHHHHHhcCCCeEEEcCeEEEEEEEccCCcEEEEEEEec-CCcEEEEEcCcEEEEccCCcchHHHHHH
Q psy14408        638 AYLTPIAGKRTNLYVLKRSKVTKVIINDQNVATGVEYVNS-KGETVRVTANKEVILTAGAIANAQLLLL  705 (720)
Q Consensus       638 a~L~~Aa~e~aGVkIi~gt~VtkIl~e~gGrAtGV~v~dt-~G~e~tIkAkK~VVVAAGa~~Sp~LLl~  705 (720)
                      .++..+.  +.|++|+++++|++|+.+ + +++||++.+. +|+..+|+|+ .||+|+|+ |+..++..
T Consensus       154 ~l~~~a~--~~Gv~i~~~~~V~~l~~~-~-~~~~V~~~d~~~G~~~~i~A~-~VV~AtG~-~s~~l~~~  216 (501)
T 2qcu_A          154 ANAQMVV--RKGGEVLTRTRATSARRE-N-GLWIVEAEDIDTGKKYSWQAR-GLVNATGP-WVKQFFDD  216 (501)
T ss_dssp             HHHHHHH--HTTCEEECSEEEEEEEEE-T-TEEEEEEEETTTCCEEEEEES-CEEECCGG-GHHHHHHH
T ss_pred             HHHHHHH--HcCCEEEcCcEEEEEEEe-C-CEEEEEEEECCCCCEEEEECC-EEEECCCh-hHHHHHHH
Confidence            3444444  789999999999999987 4 6788988763 5666789997 59999997 67777663

>2i0z_A NAD(FAD)-utilizing dehydrogenases; structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; HET: FAD; 1.84A {Bacillus cereus} SCOP: c.3.1.8 e.74.1.1

Probab=99.32  E-value=8.5e-12  Score=137.23  Aligned_cols=64  Identities=16%  Similarity=0.154  Sum_probs=48.9

Q ss_pred             HHHHHHhcCCCeEEEcCeEEEEEEEccCCcEEEEEEEecCCcEEEEEcCcEEEEccCCcch---------HHHHHHcCCC
Q psy14408        639 YLTPIAGKRTNLYVLKRSKVTKVIINDQNVATGVEYVNSKGETVRVTANKEVILTAGAIAN---------AQLLLLSGIG  709 (720)
Q Consensus       639 ~L~~Aa~e~aGVkIi~gt~VtkIl~e~gGrAtGV~v~dt~G~e~tIkAkK~VVVAAGa~~S---------p~LLl~SGIg  709 (720)
                      .|.+.+ ++.|++|+++++|++|+.+ ++++.+|++.+  |.  +|+|+ .||+|+|++..         -.++.+.|+.
T Consensus       139 ~L~~~~-~~~GV~i~~~~~V~~i~~~-~~~v~~V~~~~--G~--~i~Ad-~VVlAtGg~s~~~~g~tG~g~~la~~~G~~  211 (447)
T 2i0z_A          139 ALLTRL-KDLGVKIRTNTPVETIEYE-NGQTKAVILQT--GE--VLETN-HVVIAVGGKSVPQTGSTGDGYAWAEKAGHT  211 (447)
T ss_dssp             HHHHHH-HHTTCEEECSCCEEEEEEE-TTEEEEEEETT--CC--EEECS-CEEECCCCSSSGGGSCSSHHHHHHHHTTCC
T ss_pred             HHHHHH-HHCCCEEEeCcEEEEEEec-CCcEEEEEECC--CC--EEECC-EEEECCCCCcCCCCCCCcHHHHHHHHCCCC
Confidence            344444 3689999999999999987 77888887654  53  68997 59999998652         3677888875

>1jnr_A Adenylylsulfate reductase; oxidoreductase; HET: FAD; 1.60A {Archaeoglobus fulgidus dsm 4304} SCOP: a.7.3.1 c.3.1.4 d.168.1.1 PDB: 1jnz_A* 2fjb_A* 2fja_A* 2fjd_A* 2fje_A*

Probab=99.32  E-value=3.1e-11  Score=139.42  Aligned_cols=59  Identities=17%  Similarity=0.202  Sum_probs=46.1

Q ss_pred             HHHHHHHhcCC-Ce-EEEcCeEEEEEEEccCC---cEEEEEEEec-CCcEEEEEcCcEEEEccCCcch
Q psy14408        638 AYLTPIAGKRT-NL-YVLKRSKVTKVIINDQN---VATGVEYVNS-KGETVRVTANKEVILTAGAIAN  699 (720)
Q Consensus       638 a~L~~Aa~e~a-GV-kIi~gt~VtkIl~e~gG---rAtGV~v~dt-~G~e~tIkAkK~VVVAAGa~~S  699 (720)
                      ..|..++ ++. |+ +|++++.|++|+.+ ++   +|+||.+.+. +|+...|+|+ .||+|+|++..
T Consensus       155 ~~l~~~~-~~~~gv~~i~~~~~v~~L~~~-~~~~g~v~Gv~~~~~~~g~~~~i~A~-~VVlAtGG~~~  219 (643)
T 1jnr_A          155 PIIAEAA-KMAVGEENIYERVFIFELLKD-NNDPNAVAGAVGFSVREPKFYVFKAK-AVILATGGATL  219 (643)
T ss_dssp             HHHHHHH-HHHHCGGGEECSEEEEEEEEC-TTCTTBEEEEEEEESSSSCEEEEECS-EEEECCCCBCS
T ss_pred             HHHHHHH-HhcCCCcEEEecCEEEEEEEc-CCccceeEEEEEEEecCCcEEEEEcC-EEEECCCcccc
Confidence            3444444 355 99 99999999999997 55   9999998653 5666689996 69999999764

>1kf6_A Fumarate reductase flavoprotein; respiration, fumarate reductace, succinate dehydrogenase, CO quinol, quinone, oxidoreductase; HET: FAD HQO CE1 1PE; 2.70A {Escherichia coli} SCOP: a.7.3.1 c.3.1.4 d.168.1.1 PDB: 1kfy_A* 1l0v_A* 2b76_A* 3cir_A* 3p4p_A* 3p4q_A* 3p4r_A* 3p4s_A*

Probab=99.30  E-value=7.2e-11  Score=135.52  Aligned_cols=58  Identities=17%  Similarity=0.314  Sum_probs=46.3

Q ss_pred             HHHHHHhcCCC-eEEEcCeEEEEEEEccCCcEEEEEEEec-CCcEEEEEcCcEEEEccCCcch
Q psy14408        639 YLTPIAGKRTN-LYVLKRSKVTKVIINDQNVATGVEYVNS-KGETVRVTANKEVILTAGAIAN  699 (720)
Q Consensus       639 ~L~~Aa~e~aG-VkIi~gt~VtkIl~e~gGrAtGV~v~dt-~G~e~tIkAkK~VVVAAGa~~S  699 (720)
                      .|...+ ++.| ++|++++.|++|+.+ +++|.||.+.+. +|+..+|+|+ .||+|+|++..
T Consensus       139 ~L~~~~-~~~gnv~i~~~~~v~~l~~~-~g~v~Gv~~~~~~~G~~~~i~A~-~VVlAtGg~s~  198 (602)
T 1kf6_A          139 TLFQTS-LQFPQIQRFDEHFVLDILVD-DGHVRGLVAMNMMEGTLVQIRAN-AVVMATGGAGR  198 (602)
T ss_dssp             HHHHHH-TTCTTEEEEETEEEEEEEEE-TTEEEEEEEEETTTTEEEEEECS-CEEECCCCCGG
T ss_pred             HHHHHH-HhCCCcEEEeCCEEEEEEEe-CCEEEEEEEEEcCCCcEEEEEcC-eEEECCCCCcc
Confidence            344444 3667 999999999999998 889999988763 5766689997 59999999654

>3gyx_A Adenylylsulfate reductase; oxidoreductase; HET: FAD; 3.20A {Desulfovibrio gigas}

Probab=99.30  E-value=2.6e-11  Score=140.87  Aligned_cols=48  Identities=19%  Similarity=0.299  Sum_probs=41.8

Q ss_pred             CeEEEcCeEEEEEEEccCC---cEEEEEEEec-CCcEEEEEcCcEEEEccCCcc
Q psy14408        649 NLYVLKRSKVTKVIINDQN---VATGVEYVNS-KGETVRVTANKEVILTAGAIA  698 (720)
Q Consensus       649 GVkIi~gt~VtkIl~e~gG---rAtGV~v~dt-~G~e~tIkAkK~VVVAAGa~~  698 (720)
                      |++|++++.|++|+.+ ++   +|.||.+.+. +|+...|+|+ .||+|+|++.
T Consensus       182 gV~i~~~~~v~dLi~~-~~~~g~v~Gv~~~~~~~g~~~~i~Ak-~VVLATGG~g  233 (662)
T 3gyx_A          182 QDRIIERIFIVKLLLD-KNTPNRIAGAVGFNLRANEVHIFKAN-AMVVACGGAV  233 (662)
T ss_dssp             TTTEECSEEECCCEEC-SSSTTBEEEEEEEESSSSCEEEEECS-EEEECCCCBC
T ss_pred             CcEEEEceEEEEEEEe-CCccceEEEEEEEEcCCCcEEEEEeC-EEEECCCccc
Confidence            9999999999999998 55   9999988764 5777789997 6999999976

>3pvc_A TRNA 5-methylaminomethyl-2-thiouridine biosynthes bifunctional protein MNMC; structural genomics, PSI-biology; HET: FAD; 2.31A {Yersinia pestis} PDB: 3sgl_A*

Probab=99.30  E-value=5e-12  Score=146.69  Aligned_cols=37  Identities=27%  Similarity=0.319  Sum_probs=33.7

Q ss_pred             CcccEEEECCcHHHHHHHHHHHhcCCCcEEEEccCCCC
Q psy14408        432 DCFDIIIVGASAAGCVLANRLSEVSSLKVLLIEAGGDT  469 (720)
Q Consensus       432 ~eyDVVIIGSGiAGLvAA~~LAea~G~KVLVLEKG~~~  469 (720)
                      .++||||||||++|+++|++|+++ |++|+||||+...
T Consensus       263 ~~~DVvIIGgGiaGlsaA~~La~~-G~~V~vlEk~~~~  299 (689)
T 3pvc_A          263 RCDDIAIIGGGIVSALTALALQRR-GAVVTLYCADAQP  299 (689)
T ss_dssp             CCSSEEEECCSHHHHHHHHHHHTT-TCCEEEEESSSST
T ss_pred             CCCCEEEECCcHHHHHHHHHHHHC-CCcEEEEeCCCcc
Confidence            358999999999999999999999 9999999997543

>3oz2_A Digeranylgeranylglycerophospholipid reductase; structural genomics, joint center for structural genomics; HET: MSE FAD OZ2; 1.60A {Thermoplasma acidophilum}

Probab=99.29  E-value=1.6e-11  Score=128.79  Aligned_cols=69  Identities=23%  Similarity=0.269  Sum_probs=48.3

Q ss_pred             HHHHHHHHHHhcCCCeEEEcCeEEEEEEEccCCcEEEEEEEecCCcEEEEEcCcEEEEccCCcchHHHHHHcCCC
Q psy14408        635 AADAYLTPIAGKRTNLYVLKRSKVTKVIINDQNVATGVEYVNSKGETVRVTANKEVILTAGAIANAQLLLLSGIG  709 (720)
Q Consensus       635 aa~a~L~~Aa~e~aGVkIi~gt~VtkIl~e~gGrAtGV~v~dt~G~e~tIkAkK~VVVAAGa~~Sp~LLl~SGIg  709 (720)
                      ....+|...+ ++.|++++.+++|+.++.+ ++++++|.... +|+..+++|+ -||.|.| .++. +-...|+.
T Consensus       103 ~~~~~L~~~a-~~~G~~~~~~~~v~~~~~~-~~~~~~v~~~~-~~~~~~~~a~-~vIgAdG-~~S~-vr~~~g~~  171 (397)
T 3oz2_A          103 KFDKHLAALA-AKAGADVWVKSPALGVIKE-NGKVAGAKIRH-NNEIVDVRAK-MVIAADG-FESE-FGRWAGLK  171 (397)
T ss_dssp             HHHHHHHHHH-HHHTCEEESSCCEEEEEEE-TTEEEEEEEEE-TTEEEEEEEE-EEEECCC-TTCH-HHHHHTCG
T ss_pred             HHHHHHHHHH-HhcCcEEeeeeeeeeeeec-cceeeeeeecc-cccceEEEEe-EEEeCCc-cccH-HHHHcCCC
Confidence            3445565555 4789999999999999998 88888888765 5666789995 3555555 4553 33444554

>1chu_A Protein (L-aspartate oxidase); flavoenzyme, NAD biosynthesis, FAD, oxidoreductase; 2.20A {Escherichia coli} SCOP: a.7.3.1 c.3.1.4 d.168.1.1 PDB: 1knr_A* 1knp_A*

Probab=99.28  E-value=1.4e-11  Score=139.53  Aligned_cols=51  Identities=25%  Similarity=0.377  Sum_probs=42.3

Q ss_pred             CCCeEEEcCeEEEEEEEccCC------cEEEEEEEec-CCcEEEEEcCcEEEEccCCcc
Q psy14408        647 RTNLYVLKRSKVTKVIINDQN------VATGVEYVNS-KGETVRVTANKEVILTAGAIA  698 (720)
Q Consensus       647 ~aGVkIi~gt~VtkIl~e~gG------rAtGV~v~dt-~G~e~tIkAkK~VVVAAGa~~  698 (720)
                      ..|++|++++.|++|+.++++      +|.||.+.+. +|+..+|+|+ .||+|+|++.
T Consensus       151 ~~gv~i~~~~~v~~L~~~~~g~~~~~~~v~Gv~~~~~~~G~~~~i~A~-~VVlAtGg~~  208 (540)
T 1chu_A          151 HPNIRVLERTNAVDLIVSDKIGLPGTRRVVGAWVWNRNKETVETCHAK-AVVLATGGAS  208 (540)
T ss_dssp             CTTEEEECSEEEEEEEEGGGTTCCSSCBEEEEEEEETTTTEEEEEECS-EEEECCCCCG
T ss_pred             CCCCEEEeCcEEEEEEEcCCCCcccCCEEEEEEEEEcCCCcEEEEEcC-eEEECCCCcc
Confidence            379999999999999984245      8999999863 5766789997 6999999865

>1twf_A B220, DNA-directed RNA polymerase II largest subunit; transcription, mRNA, multiprotein complex; HET: UTP; 2.30A {Saccharomyces cerevisiae} SCOP: e.29.1.2 PDB: 1i3q_A 1i6h_A 1k83_A* 1nik_A 1nt9_A 1pqv_A 1r5u_A 1r9s_A* 1r9t_A* 1sfo_A* 1twa_A* 1twc_A* 1i50_A* 1twg_A* 1twh_A* 1wcm_A 1y1v_A 1y1w_A 1y1y_A 1y77_A* ...

Probab=99.26  E-value=4.7e-13  Score=167.44  Aligned_cols=19  Identities=47%  Similarity=0.761  Sum_probs=0.0

Q ss_pred             CCCCCcccccccccCCCCC
Q psy14408        159 NPDSPYYNQYQFLYSPLSP  177 (720)
Q Consensus       159 ~~~~~~~~~~~~~~~~~~~  177 (720)
                      +|+||.|..-..-|||+||
T Consensus      1634 sptsp~ysp~sp~~sp~sp 1652 (1733)
T 1twf_A         1634 SPTSPSYSPTSPSYSPTSP 1652 (1733)
T ss_dssp             -------------------
T ss_pred             CCCCCCCCCCCCCCCCCCC
Confidence            4445554444444444444

>3ka7_A Oxidoreductase; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; HET: FAD; 1.80A {Methanosarcina mazei}

Probab=99.25  E-value=9.5e-12  Score=133.77  Aligned_cols=59  Identities=22%  Similarity=0.215  Sum_probs=45.4

Q ss_pred             HHHHHHHhcCCCeEEEcCeEEEEEEEccCCcEEEEEEEecCCcEEEEEcCcEEEEccCCcchHHHHH
Q psy14408        638 AYLTPIAGKRTNLYVLKRSKVTKVIINDQNVATGVEYVNSKGETVRVTANKEVILTAGAIANAQLLL  704 (720)
Q Consensus       638 a~L~~Aa~e~aGVkIi~gt~VtkIl~e~gGrAtGV~v~dt~G~e~tIkAkK~VVVAAGa~~Sp~LLl  704 (720)
                      ..|.+.+ ++.|++|+++++|++|+.+ +++++||++   +|+  +++|+ .||+|+|+..+..||.
T Consensus       200 ~~l~~~~-~~~G~~i~~~~~V~~i~~~-~~~~~gv~~---~g~--~~~ad-~VV~a~~~~~~~~ll~  258 (425)
T 3ka7_A          200 DALETVI-SANGGKIHTGQEVSKILIE-NGKAAGIIA---DDR--IHDAD-LVISNLGHAATAVLCS  258 (425)
T ss_dssp             HHHHHHH-HHTTCEEECSCCEEEEEEE-TTEEEEEEE---TTE--EEECS-EEEECSCHHHHHHHTT
T ss_pred             HHHHHHH-HHcCCEEEECCceeEEEEE-CCEEEEEEE---CCE--EEECC-EEEECCCHHHHHHhcC
Confidence            3344444 4789999999999999998 888888875   243  78997 5999999876666543

>3v76_A Flavoprotein; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; HET: FDA; 2.51A {Sinorhizobium meliloti}

Probab=99.18  E-value=7.1e-11  Score=129.77  Aligned_cols=37  Identities=30%  Similarity=0.443  Sum_probs=33.0

Q ss_pred             CcccEEEECCcHHHHHHHHHHHhcCCCcEEEEccCCCC
Q psy14408        432 DCFDIIIVGASAAGCVLANRLSEVSSLKVLLIEAGGDT  469 (720)
Q Consensus       432 ~eyDVVIIGSGiAGLvAA~~LAea~G~KVLVLEKG~~~  469 (720)
                      .++||||||||++|++||+.|+++ |++|+||||+...
T Consensus        26 ~~~dViIIGgG~AGl~aA~~La~~-G~~V~llEk~~~~   62 (417)
T 3v76_A           26 EKQDVVIIGAGAAGMMCAIEAGKR-GRRVLVIDHARAP   62 (417)
T ss_dssp             --CCEEEECCSHHHHHHHHHHHHT-TCCEEEECSSSSS
T ss_pred             CCCCEEEECcCHHHHHHHHHHHHC-CCcEEEEeCCCCC
Confidence            468999999999999999999999 9999999998543

>1rp0_A ARA6, thiazole biosynthetic enzyme; protein ligand complex, biosynthetic protein; HET: AHZ HTO; 1.60A {Arabidopsis thaliana} SCOP: c.3.1.6

Probab=99.17  E-value=5.6e-10  Score=115.54  Aligned_cols=66  Identities=17%  Similarity=0.205  Sum_probs=47.5

Q ss_pred             HHHHHHhcCCCeEEEcCeEEEEEEEccCCcEEEEEEEec-------C---CcEEEEEcCcEEEEccCC-----cchHHHH
Q psy14408        639 YLTPIAGKRTNLYVLKRSKVTKVIINDQNVATGVEYVNS-------K---GETVRVTANKEVILTAGA-----IANAQLL  703 (720)
Q Consensus       639 ~L~~Aa~e~aGVkIi~gt~VtkIl~e~gGrAtGV~v~dt-------~---G~e~tIkAkK~VVVAAGa-----~~Sp~LL  703 (720)
                      ++..+. ++.|++|+++++|++|..+ ++++.||++.+.       +   |+..+++|+ .||+|+|+     .+...++
T Consensus       125 l~~~~~-~~~gv~i~~~~~V~~i~~~-~~~v~gv~~~~~~~~~~~~~g~~g~~~~i~ad-~VV~AtG~~s~~~~~~~~~~  201 (284)
T 1rp0_A          125 IMSKLL-ARPNVKLFNAVAAEDLIVK-GNRVGGVVTNWALVAQNHHTQSCMDPNVMEAK-IVVSSCGHDGPFGATGVKRL  201 (284)
T ss_dssp             HHHHHH-TSTTEEEEETEEEEEEEEE-TTEEEEEEEEEHHHHTCTTTSSCCCCEEEEEE-EEEECCCSSSTTTTHHHHHH
T ss_pred             HHHHHH-hcCCCEEEcCcEEEEEEec-CCeEEEEEEeccccccccCccccCceEEEECC-EEEECCCCchHHHHHHHHHh
Confidence            334444 3579999999999999988 788999988631       1   334689997 59999995     3445555


Q ss_pred             HHcC
Q psy14408        704 LLSG  707 (720)
Q Consensus       704 l~SG  707 (720)
                      ...|
T Consensus       202 ~~~g  205 (284)
T 1rp0_A          202 KSIG  205 (284)
T ss_dssp             HHTT
T ss_pred             hhcc
Confidence            4444

>3nlc_A Uncharacterized protein VP0956; FAD-binding protein, NESG, structural genomics, PSI-2, prote structure initiative; HET: FAD; 2.15A {Vibrio parahaemolyticus}

Probab=99.17  E-value=2.2e-10  Score=130.43  Aligned_cols=65  Identities=20%  Similarity=0.284  Sum_probs=49.1

Q ss_pred             HHHHHHHhcCCCeEEEcCeEEEEEEEccCCcEEEEEEEecCCcEEEEEcCcEEEEccCCcchH--HHHHHcCCC
Q psy14408        638 AYLTPIAGKRTNLYVLKRSKVTKVIINDQNVATGVEYVNSKGETVRVTANKEVILTAGAIANA--QLLLLSGIG  709 (720)
Q Consensus       638 a~L~~Aa~e~aGVkIi~gt~VtkIl~e~gGrAtGV~v~dt~G~e~tIkAkK~VVVAAGa~~Sp--~LLl~SGIg  709 (720)
                      ..|.+.+ ++.|++|+++++|++|+.+ ++++.||++.+  |+  +++|+. ||+|+|+....  .+|...|+.
T Consensus       224 ~~L~~~l-~~~Gv~I~~~t~V~~I~~~-~~~v~gV~l~~--G~--~i~Ad~-VVlA~G~~s~~~~~~l~~~Gi~  290 (549)
T 3nlc_A          224 EKMRATI-IELGGEIRFSTRVDDLHME-DGQITGVTLSN--GE--EIKSRH-VVLAVGHSARDTFEMLHERGVY  290 (549)
T ss_dssp             HHHHHHH-HHTTCEEESSCCEEEEEES-SSBEEEEEETT--SC--EEECSC-EEECCCTTCHHHHHHHHHTTCC
T ss_pred             HHHHHHH-HhcCCEEEeCCEEEEEEEe-CCEEEEEEECC--CC--EEECCE-EEECCCCChhhHHHHHHHcCCC
Confidence            3444444 4679999999999999988 78888888754  54  689984 99999986532  356666765

>2e5v_A L-aspartate oxidase; archaea, oxidoreductase; HET: FAD; 2.09A {Sulfolobus tokodaii}

Probab=99.13  E-value=5.3e-10  Score=124.37  Aligned_cols=53  Identities=13%  Similarity=0.283  Sum_probs=40.4

Q ss_pred             HHHHHHhcCCCeEEEcCeEEEEEEEccCCcEEEEEEEecCCcEEEEEcCcEEEEccCCcc
Q psy14408        639 YLTPIAGKRTNLYVLKRSKVTKVIINDQNVATGVEYVNSKGETVRVTANKEVILTAGAIA  698 (720)
Q Consensus       639 ~L~~Aa~e~aGVkIi~gt~VtkIl~e~gGrAtGV~v~dt~G~e~tIkAkK~VVVAAGa~~  698 (720)
                      .|.+.+ ++.|++|++++.| +|+.+ ++++.||.+.+.+|   ++.|+ .||+|+|++.
T Consensus       124 ~L~~~~-~~~gv~i~~~~~v-~l~~~-~~~v~Gv~v~~~~g---~~~a~-~VVlAtGg~~  176 (472)
T 2e5v_A          124 FLLKLA-REEGIPIIEDRLV-EIRVK-DGKVTGFVTEKRGL---VEDVD-KLVLATGGYS  176 (472)
T ss_dssp             HHHHHH-HHTTCCEECCCEE-EEEEE-TTEEEEEEETTTEE---ECCCS-EEEECCCCCG
T ss_pred             HHHHHH-HhCCCEEEECcEE-EEEEe-CCEEEEEEEEeCCC---eEEee-eEEECCCCCc
Confidence            344444 4679999999999 99988 78999998764223   46786 6999999864

>3nix_A Flavoprotein/dehydrogenase; structural genomics, PSI-2, NES protein structure initiative, northeast structural genomics consortium; HET: FAD; 2.60A {Cytophaga hutchinsonii}

Probab=99.13  E-value=3.7e-10  Score=121.17  Aligned_cols=68  Identities=18%  Similarity=0.148  Sum_probs=46.5

Q ss_pred             HHHHHHHHHhcCCCeEEEcCeEEEEEEEccCCcEEEEEEEecCCcEEEEEcCcEEEEccCCcchHHHHHHcCCC
Q psy14408        636 ADAYLTPIAGKRTNLYVLKRSKVTKVIINDQNVATGVEYVNSKGETVRVTANKEVILTAGAIANAQLLLLSGIG  709 (720)
Q Consensus       636 a~a~L~~Aa~e~aGVkIi~gt~VtkIl~e~gGrAtGV~v~dt~G~e~tIkAkK~VVVAAGa~~Sp~LLl~SGIg  709 (720)
                      ...+|.+.+ ++.|++|+.+++|++|+.+ ++.+. |.+.+.+|+..+++|+ .||+|+|. ++ .+....|+.
T Consensus       108 ~~~~L~~~a-~~~gv~i~~~~~v~~i~~~-~~~~~-v~v~~~~g~~~~~~a~-~vV~A~G~-~s-~l~~~~g~~  175 (421)
T 3nix_A          108 FDKTLADEA-ARQGVDVEYEVGVTDIKFF-GTDSV-TTIEDINGNKREIEAR-FIIDASGY-GR-VIPRMFGLD  175 (421)
T ss_dssp             HHHHHHHHH-HHHTCEEECSEEEEEEEEE-TTEEE-EEEEETTSCEEEEEEE-EEEECCGG-GC-HHHHHTTCE
T ss_pred             HHHHHHHHH-HhCCCEEEcCCEEEEEEEe-CCEEE-EEEEcCCCCEEEEEcC-EEEECCCC-ch-hhHHhcCCC
Confidence            334555554 3669999999999999987 44332 4454446776789997 59999986 44 444555554

>3nrn_A Uncharacterized protein PF1083; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative; HET: AMP; 2.10A {Pyrococcus furiosus}

Probab=99.12  E-value=6.2e-10  Score=120.24  Aligned_cols=37  Identities=16%  Similarity=0.258  Sum_probs=34.2

Q ss_pred             cEEEECCcHHHHHHHHHHHhcCCCcEEEEccCCCCCCC
Q psy14408        435 DIIIVGASAAGCVLANRLSEVSSLKVLLIEAGGDTPIH  472 (720)
Q Consensus       435 DVVIIGSGiAGLvAA~~LAea~G~KVLVLEKG~~~~~s  472 (720)
                      ||||||||++||+||++|+++ |++|+||||+...++.
T Consensus         2 dVvVIGaGiaGLsaA~~La~~-G~~V~vlE~~~~~GG~   38 (421)
T 3nrn_A            2 RAVVVGAGLGGLLAGAFLARN-GHEIIVLEKSAMIGGR   38 (421)
T ss_dssp             EEEEESCSHHHHHHHHHHHHT-TCEEEEECSSSSSCTT
T ss_pred             cEEEECCCHHHHHHHHHHHHC-CCeEEEEeCCCCCCce
Confidence            899999999999999999999 9999999998776544

>3e1t_A Halogenase; flavoprotein; HET: FAD; 2.05A {Chondromyces crocatus}

Probab=99.11  E-value=5e-10  Score=125.22  Aligned_cols=59  Identities=25%  Similarity=0.346  Sum_probs=47.8

Q ss_pred             HHHHHHHHHhcCCCeEEEcCeEEEEEEEccCCcEEEEEEEecCCcEEEEEcCcEEEEccCCc
Q psy14408        636 ADAYLTPIAGKRTNLYVLKRSKVTKVIINDQNVATGVEYVNSKGETVRVTANKEVILTAGAI  697 (720)
Q Consensus       636 a~a~L~~Aa~e~aGVkIi~gt~VtkIl~e~gGrAtGV~v~dt~G~e~tIkAkK~VVVAAGa~  697 (720)
                      ...+|.+.+ ++.|++|+.+++|++|+.+ ++++.||++.+.+|...+|+|+ .||+|+|..
T Consensus       113 l~~~L~~~a-~~~Gv~i~~~~~V~~v~~~-~~~v~gv~~~~~dG~~~~i~ad-~VI~AdG~~  171 (512)
T 3e1t_A          113 FDDMLLRNS-ERKGVDVRERHEVIDVLFE-GERAVGVRYRNTEGVELMAHAR-FIVDASGNR  171 (512)
T ss_dssp             HHHHHHHHH-HHTTCEEESSCEEEEEEEE-TTEEEEEEEECSSSCEEEEEEE-EEEECCCTT
T ss_pred             HHHHHHHHH-HhCCCEEEcCCEEEEEEEE-CCEEEEEEEEeCCCCEEEEEcC-EEEECCCcc
Confidence            344555555 4689999999999999998 8899999988766766789997 599999974

>3p1w_A Rabgdi protein; GDI RAB, malaria, structural genomics consortium, SGC, trans PF10_0345, protein transport; 1.85A {Plasmodium falciparum 3D7}

Probab=99.08  E-value=3.4e-10  Score=126.81  Aligned_cols=41  Identities=27%  Similarity=0.513  Sum_probs=37.0

Q ss_pred             CCcccEEEECCcHHHHHHHHHHHhcCCCcEEEEccCCCCCCC
Q psy14408        431 GDCFDIIIVGASAAGCVLANRLSEVSSLKVLLIEAGGDTPIH  472 (720)
Q Consensus       431 d~eyDVVIIGSGiAGLvAA~~LAea~G~KVLVLEKG~~~~~s  472 (720)
                      +.++||||||+|++|+++|+.||++ |++|+||||+...++.
T Consensus        18 ~~~~dv~iiG~G~~g~~~a~~l~~~-g~~v~~~e~~~~~Gg~   58 (475)
T 3p1w_A           18 GEHYDVIILGTGLKECILSGLLSHY-GKKILVLDRNPYYGGE   58 (475)
T ss_dssp             CCEEEEEEECCSHHHHHHHHHHHHT-TCCEEEECSSSSSCGG
T ss_pred             cccCCEEEECCCHHHHHHHHHHHHC-CCcEEEEeccCCCCCC
Confidence            3568999999999999999999999 9999999999877544

>3c4n_A Uncharacterized protein DR_0571; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; HET: ADP; 2.40A {Deinococcus radiodurans R1}

Probab=99.07  E-value=2.8e-10  Score=123.10  Aligned_cols=37  Identities=35%  Similarity=0.642  Sum_probs=33.1

Q ss_pred             CcccEEEECCcHHHHHHHHHHHhc-CCCcEEEEccCCC
Q psy14408        432 DCFDIIIVGASAAGCVLANRLSEV-SSLKVLLIEAGGD  468 (720)
Q Consensus       432 ~eyDVVIIGSGiAGLvAA~~LAea-~G~KVLVLEKG~~  468 (720)
                      .++||||||||++|+++|++|+++ +|++|+||||+..
T Consensus        35 ~~~dVvIIGaGi~Gls~A~~La~~~pG~~V~vlE~~~~   72 (405)
T 3c4n_A           35 EAFDIVVIGAGRMGAACAFYLRQLAPGRSLLLVEEGGL   72 (405)
T ss_dssp             CEEEEEEECCSHHHHHHHHHHHHHCTTSCEEEECSSCS
T ss_pred             CcCCEEEECCcHHHHHHHHHHHhcCCCCeEEEEeCCCC
Confidence            458999999999999999999986 3899999999843

>2gqf_A Hypothetical protein HI0933; structural genomics, FAD-utilizing protein, flavoprotein, PS protein structure initiative; HET: FAD; 2.70A {Haemophilus influenzae} SCOP: c.3.1.8 e.74.1.1

Probab=99.06  E-value=5.2e-10  Score=122.02  Aligned_cols=36  Identities=31%  Similarity=0.463  Sum_probs=33.5

Q ss_pred             CcccEEEECCcHHHHHHHHHHHhcCCCcEEEEccCCC
Q psy14408        432 DCFDIIIVGASAAGCVLANRLSEVSSLKVLLIEAGGD  468 (720)
Q Consensus       432 ~eyDVVIIGSGiAGLvAA~~LAea~G~KVLVLEKG~~  468 (720)
                      .++||||||||++|++||++|+++ |++|+||||+..
T Consensus         3 ~~~dViIIGgG~aGl~aA~~la~~-G~~V~vlEk~~~   38 (401)
T 2gqf_A            3 QYSENIIIGAGAAGLFCAAQLAKL-GKSVTVFDNGKK   38 (401)
T ss_dssp             EECSEEEECCSHHHHHHHHHHHHT-TCCEEEECSSSS
T ss_pred             CCCCEEEECCcHHHHHHHHHHHhC-CCCEEEEeCCCC
Confidence            368999999999999999999999 999999999854

>3i3l_A Alkylhalidase CMLS; flavin-dependent halogenase, chloramphenicol biosynthesis, halogenation reaction, structural genomics; HET: FAD; 2.20A {Streptomyces venezuelae}

Probab=99.06  E-value=1.4e-09  Score=124.77  Aligned_cols=68  Identities=22%  Similarity=0.225  Sum_probs=50.1

Q ss_pred             HHHHHHHHHhcCCCeEEEcCeEEEEEEEccCCcEEEEEEEecCCcEEEEEcCcEEEEccCCcchHHHHHHcCCC
Q psy14408        636 ADAYLTPIAGKRTNLYVLKRSKVTKVIINDQNVATGVEYVNSKGETVRVTANKEVILTAGAIANAQLLLLSGIG  709 (720)
Q Consensus       636 a~a~L~~Aa~e~aGVkIi~gt~VtkIl~e~gGrAtGV~v~dt~G~e~tIkAkK~VVVAAGa~~Sp~LLl~SGIg  709 (720)
                      ...+|.+.+ ++.|++|+++++|++|..+ ++++.+|++.+ +|+..+|+|+ .||.|+|. ++ .+....|+.
T Consensus       130 l~~~L~~~a-~~~Gv~i~~g~~V~~v~~~-~g~~~~V~~~~-~G~~~~i~Ad-lVV~AdG~-~S-~lr~~lg~~  197 (591)
T 3i3l_A          130 FDKLLLDEA-RSRGITVHEETPVTDVDLS-DPDRVVLTVRR-GGESVTVESD-FVIDAGGS-GG-PISRKLGVR  197 (591)
T ss_dssp             HHHHHHHHH-HHTTCEEETTCCEEEEECC-STTCEEEEEEE-TTEEEEEEES-EEEECCGG-GC-HHHHHHTCE
T ss_pred             HHHHHHHHH-HhCCCEEEeCCEEEEEEEc-CCCEEEEEEec-CCceEEEEcC-EEEECCCC-cc-hhHHHcCCC
Confidence            345565555 4689999999999999987 67778888875 4666789997 59999986 44 344445554

>2bcg_G Secretory pathway GDP dissociation inhibitor; RABGTPase, geranylgeranylation, vesicular transport, protein transport; HET: GDP GER; 1.48A {Saccharomyces cerevisiae} SCOP: c.3.1.3 c.3.1.3 d.16.1.6 PDB: 1ukv_G* 3cpi_G 3cph_G 3cpj_G*

Probab=99.04  E-value=3.1e-10  Score=125.13  Aligned_cols=40  Identities=28%  Similarity=0.415  Sum_probs=36.9

Q ss_pred             CcccEEEECCcHHHHHHHHHHHhcCCCcEEEEccCCCCCCC
Q psy14408        432 DCFDIIIVGASAAGCVLANRLSEVSSLKVLLIEAGGDTPIH  472 (720)
Q Consensus       432 ~eyDVVIIGSGiAGLvAA~~LAea~G~KVLVLEKG~~~~~s  472 (720)
                      .++||||||||++||+||.+|+++ |++|+||||+...++.
T Consensus        10 ~~~dvvVIGaG~~GL~aA~~La~~-G~~V~vlE~~~~~GG~   49 (453)
T 2bcg_G           10 TDYDVIVLGTGITECILSGLLSVD-GKKVLHIDKQDHYGGE   49 (453)
T ss_dssp             CBCSEEEECCSHHHHHHHHHHHHT-TCCEEEECSSSSSCGG
T ss_pred             ccCCEEEECcCHHHHHHHHHHHHC-CCeEEEEeCCCCCCcc
Confidence            468999999999999999999999 9999999999877655

>3jsk_A Cypbp37 protein; octameric thiazole synthase, biosynthetic protein; HET: AHZ; 2.70A {Neurospora crassa}

Probab=99.01  E-value=5.4e-09  Score=112.66  Aligned_cols=37  Identities=38%  Similarity=0.530  Sum_probs=33.5

Q ss_pred             CcccEEEECCcHHHHHHHHHHHhc-CCCcEEEEccCCC
Q psy14408        432 DCFDIIIVGASAAGCVLANRLSEV-SSLKVLLIEAGGD  468 (720)
Q Consensus       432 ~eyDVVIIGSGiAGLvAA~~LAea-~G~KVLVLEKG~~  468 (720)
                      .++||||||||++||++|++|+++ .|++|+||||+..
T Consensus        78 ~~~DVvIVGgG~AGL~aA~~La~~~~G~~V~LiEk~~~  115 (344)
T 3jsk_A           78 AETDIVIVGAGSCGLSAAYVLSTLRPDLRITIVEAGVA  115 (344)
T ss_dssp             HBCSEEEECCSHHHHHHHHHHHHHCTTSCEEEEESSSS
T ss_pred             CcCCEEEECccHHHHHHHHHHHhcCCCCEEEEEeCCCc
Confidence            468999999999999999999995 5999999999843

>2gmh_A Electron transfer flavoprotein-ubiquinone oxidoreductase; HET: BHG FAD UQ5; 2.50A {Sus scrofa} SCOP: c.3.1.2 d.16.1.8 d.58.1.6 PDB: 2gmj_A*

Probab=99.00  E-value=1.2e-09  Score=124.75  Aligned_cols=73  Identities=12%  Similarity=0.217  Sum_probs=51.8

Q ss_pred             HHHHHHHHHHhcCCCeEEEcCeEEEEEEEccCCcEEEEEEEe----cCCcE-------EEEEcCcEEEEccCCcchH--H
Q psy14408        635 AADAYLTPIAGKRTNLYVLKRSKVTKVIINDQNVATGVEYVN----SKGET-------VRVTANKEVILTAGAIANA--Q  701 (720)
Q Consensus       635 aa~a~L~~Aa~e~aGVkIi~gt~VtkIl~e~gGrAtGV~v~d----t~G~e-------~tIkAkK~VVVAAGa~~Sp--~  701 (720)
                      ....+|.+.+ ++.|++|+.+++|++|+.+++|+++||++.+    .+|+.       .+++|+ .||+|.|+....  .
T Consensus       145 ~l~~~L~~~a-~~~Gv~i~~g~~v~~l~~~~~g~V~gV~~~~~g~~~~G~~~~~~~~g~~i~Ad-~VV~AdG~~S~vr~~  222 (584)
T 2gmh_A          145 HLVSWMGEQA-EALGVEVYPGYAAAEILFHEDGSVKGIATNDVGIQKDGAPKTTFERGLELHAK-VTIFAEGCHGHLAKQ  222 (584)
T ss_dssp             HHHHHHHHHH-HHTTCEEETTCCEEEEEECTTSSEEEEEECCEEECTTSCEEEEEECCCEEECS-EEEECCCTTCHHHHH
T ss_pred             HHHHHHHHHH-HHcCCEEEcCCEEEEEEEcCCCCEEEEEeCCccccCCCCcccccCCceEEECC-EEEEeeCCCchHHHH
Confidence            4445666666 4679999999999999987347899998763    23432       479997 699999986542  3


Q ss_pred             HHHHcCCC
Q psy14408        702 LLLLSGIG  709 (720)
Q Consensus       702 LLl~SGIg  709 (720)
                      ++...|+.
T Consensus       223 l~~~~gl~  230 (584)
T 2gmh_A          223 LYKKFDLR  230 (584)
T ss_dssp             HHHHTTTT
T ss_pred             HHHHhCCC
Confidence            44445654

>3atr_A Conserved archaeal protein; saturating double bonds, archaeal membrane precursor, like 2 geranylgeranylglyceryl phosphate; HET: FDA; 1.80A {Sulfolobus acidocaldarius} PDB: 3atq_A*

Probab=99.00  E-value=1.6e-09  Score=118.83  Aligned_cols=58  Identities=16%  Similarity=0.175  Sum_probs=45.6

Q ss_pred             HHHHHHHhcCCCeEEEcCeEEEEEEEccCCcEEEEEEEec-CCcEEEEEcCcEEEEccCCcc
Q psy14408        638 AYLTPIAGKRTNLYVLKRSKVTKVIINDQNVATGVEYVNS-KGETVRVTANKEVILTAGAIA  698 (720)
Q Consensus       638 a~L~~Aa~e~aGVkIi~gt~VtkIl~e~gGrAtGV~v~dt-~G~e~tIkAkK~VVVAAGa~~  698 (720)
                      .+|.+.+ ++.|++|+.+++|++|..+ +++++||++.+. +|+..+++|+ .||.|+|+..
T Consensus       104 ~~L~~~a-~~~gv~i~~~~~v~~i~~~-~~~v~gv~~~~~~~G~~~~~~ad-~VV~AdG~~s  162 (453)
T 3atr_A          104 QRVLKEA-QDRGVEIWDLTTAMKPIFE-DGYVKGAVLFNRRTNEELTVYSK-VVVEATGYSR  162 (453)
T ss_dssp             HHHHHHH-HHTTCEEESSEEEEEEEEE-TTEEEEEEEEETTTTEEEEEECS-EEEECCGGGC
T ss_pred             HHHHHHH-HHcCCEEEeCcEEEEEEEE-CCEEEEEEEEEcCCCceEEEEcC-EEEECcCCch
Confidence            4455544 3689999999999999988 788999988754 5666689997 5999999743

>3ihg_A RDME; flavoenzyme, anthracycline, polyketide biosynthesis, merohedral twinning, enzyme mechanism, hydroxylase, flavoprotein; HET: FAD VAK; 2.49A {Streptomyces purpurascens}

Probab=98.96  E-value=1.1e-08  Score=114.73  Aligned_cols=36  Identities=28%  Similarity=0.416  Sum_probs=33.5

Q ss_pred             CcccEEEECCcHHHHHHHHHHHhcCCCcEEEEccCCC
Q psy14408        432 DCFDIIIVGASAAGCVLANRLSEVSSLKVLLIEAGGD  468 (720)
Q Consensus       432 ~eyDVVIIGSGiAGLvAA~~LAea~G~KVLVLEKG~~  468 (720)
                      .++||||||||++||++|+.|+++ |++|+||||...
T Consensus         4 ~~~dVlIVGaG~aGl~~A~~La~~-G~~v~viEr~~~   39 (535)
T 3ihg_A            4 HEVDVLVVGAGLGGLSTAMFLARQ-GVRVLVVERRPG   39 (535)
T ss_dssp             CSEEEEEECCSHHHHHHHHHHHTT-TCCEEEECSSSS
T ss_pred             ccCcEEEECcCHHHHHHHHHHHHC-CCCEEEEeCCCC
Confidence            468999999999999999999999 999999999853

>3lxd_A FAD-dependent pyridine nucleotide-disulphide oxidoreductase; glutathione reductase (GR)-like ONFR; HET: FAD; 2.50A {Novosphingobium aromaticivorans}

Probab=98.95  E-value=7.8e-09  Score=112.01  Aligned_cols=66  Identities=15%  Similarity=0.222  Sum_probs=53.4

Q ss_pred             HHHHHHHhcCCCeEEEcCeEEEEEEEccCCcEEEEEEEecCCcEEEEEcCcEEEEccCCcchHHHHHHcCCCC
Q psy14408        638 AYLTPIAGKRTNLYVLKRSKVTKVIINDQNVATGVEYVNSKGETVRVTANKEVILTAGAIANAQLLLLSGIGP  710 (720)
Q Consensus       638 a~L~~Aa~e~aGVkIi~gt~VtkIl~e~gGrAtGV~v~dt~G~e~tIkAkK~VVVAAGa~~Sp~LLl~SGIgp  710 (720)
                      .++.+.+ ++.|++|++++.|++|..+ ++++.+|++.+  |+  ++.|+ .||+|+|......+|..+|+.-
T Consensus       198 ~~l~~~l-~~~GV~i~~~~~v~~i~~~-~~~v~~v~l~d--G~--~i~aD-~Vv~a~G~~p~~~l~~~~gl~~  263 (415)
T 3lxd_A          198 EFYQAEH-RAHGVDLRTGAAMDCIEGD-GTKVTGVRMQD--GS--VIPAD-IVIVGIGIVPCVGALISAGASG  263 (415)
T ss_dssp             HHHHHHH-HHTTCEEEETCCEEEEEES-SSBEEEEEESS--SC--EEECS-EEEECSCCEESCHHHHHTTCCC
T ss_pred             HHHHHHH-HhCCCEEEECCEEEEEEec-CCcEEEEEeCC--CC--EEEcC-EEEECCCCccChHHHHhCCCCc
Confidence            4455555 5789999999999999987 78888888765  64  68898 5999999887777888888763

>3fmw_A Oxygenase; mithramycin, baeyer-villiger, flavin binding protein, oxidoreductase; HET: FAD; 2.89A {Streptomyces argillaceus}

Probab=98.93  E-value=5.8e-09  Score=118.94  Aligned_cols=36  Identities=25%  Similarity=0.381  Sum_probs=31.5

Q ss_pred             CcccEEEECCcHHHHHHHHHHHhcCCCcEEEEccCCC
Q psy14408        432 DCFDIIIVGASAAGCVLANRLSEVSSLKVLLIEAGGD  468 (720)
Q Consensus       432 ~eyDVVIIGSGiAGLvAA~~LAea~G~KVLVLEKG~~  468 (720)
                      +++||||||||++||++|+.|+++ |++|+||||...
T Consensus        48 ~~~DVvIVGaG~aGL~~A~~La~~-G~~V~VlEr~~~   83 (570)
T 3fmw_A           48 LTTDVVVVGGGPVGLMLAGELRAG-GVGALVLEKLVE   83 (570)
T ss_dssp             ---CEEEECCSHHHHHHHHHHHHT-TCCEEEEBSCSS
T ss_pred             CCCCEEEECcCHHHHHHHHHHHHC-CCCEEEEcCCCC
Confidence            468999999999999999999999 999999999843

>4gde_A UDP-galactopyranose mutase; flavin adenine dinucleotide binding, nucleotide binding, MUT isomerase; HET: FDA; 2.20A {Aspergillus fumigatus} PDB: 3ute_A* 3utg_A* 3uth_A* 4gdc_A* 4gdd_A* 3utf_A* 3ukh_A* 3ukf_A* 3uka_A* 3ukl_A* 3ukk_A* 3ukq_A* 3ukp_A*

Probab=98.93  E-value=2.3e-09  Score=117.76  Aligned_cols=42  Identities=17%  Similarity=0.336  Sum_probs=37.5

Q ss_pred             CCcccEEEECCcHHHHHHHHHHHhcCCCcEEEEccCCCCCCC
Q psy14408        431 GDCFDIIIVGASAAGCVLANRLSEVSSLKVLLIEAGGDTPIH  472 (720)
Q Consensus       431 d~eyDVVIIGSGiAGLvAA~~LAea~G~KVLVLEKG~~~~~s  472 (720)
                      ++.+||||||||++||+||++|+++.|++|+||||..+.++.
T Consensus         8 ~~~~DVvIIGaGisGLsaA~~L~k~~G~~V~VlE~~~~~GG~   49 (513)
T 4gde_A            8 DISVDVLVIGAGPTGLGAAKRLNQIDGPSWMIVDSNETPGGL   49 (513)
T ss_dssp             SEEEEEEEECCSHHHHHHHHHHHHHCCSCEEEEESSSSCCGG
T ss_pred             CCCCCEEEECCcHHHHHHHHHHHhhCCCCEEEEECCCCCcCC
Confidence            456899999999999999999998449999999999888764

>3itj_A Thioredoxin reductase 1; disulfide B flavoprotein, NADP, oxidoreductase, phosphoprotein, redox-A center; HET: FAD CIT; 2.40A {Saccharomyces cerevisiae} PDB: 3d8x_A*

Probab=98.92  E-value=1.6e-09  Score=111.70  Aligned_cols=67  Identities=9%  Similarity=0.142  Sum_probs=49.8

Q ss_pred             HHHHHHhcCCCeEEEcCeEEEEEEEccCCcEEEEEEEec-CCcEEEEEcCcEEEEccCCcchHHHHHHcCCC
Q psy14408        639 YLTPIAGKRTNLYVLKRSKVTKVIINDQNVATGVEYVNS-KGETVRVTANKEVILTAGAIANAQLLLLSGIG  709 (720)
Q Consensus       639 ~L~~Aa~e~aGVkIi~gt~VtkIl~e~gGrAtGV~v~dt-~G~e~tIkAkK~VVVAAGa~~Sp~LLl~SGIg  709 (720)
                      ++..+. ++.|++|+.++.|++|..+ ++++.+|++.+. +|+..++.++ .||+|+|......++.. |+.
T Consensus       214 ~~~~l~-~~~gv~i~~~~~v~~i~~~-~~~~~~v~~~~~~~g~~~~i~~D-~vi~a~G~~p~~~~~~~-~l~  281 (338)
T 3itj_A          214 MQKRAE-KNEKIEILYNTVALEAKGD-GKLLNALRIKNTKKNEETDLPVS-GLFYAIGHTPATKIVAG-QVD  281 (338)
T ss_dssp             HHHHHH-HCTTEEEECSEEEEEEEES-SSSEEEEEEEETTTTEEEEEECS-EEEECSCEEECCGGGBT-TBC
T ss_pred             HHHHHH-hcCCeEEeecceeEEEEcc-cCcEEEEEEEECCCCceEEEEeC-EEEEEeCCCCChhHhhC-ceE
Confidence            444444 3459999999999999987 778899999874 4555789998 69999997655554433 543

>2x3n_A Probable FAD-dependent monooxygenase; oxidoreductase; HET: FAD; 1.75A {Pseudomonas aeruginosa}

Probab=98.92  E-value=5.7e-09  Score=111.67  Aligned_cols=35  Identities=26%  Similarity=0.482  Sum_probs=32.8

Q ss_pred             CcccEEEECCcHHHHHHHHHHHhcCCCcEEEEccCC
Q psy14408        432 DCFDIIIVGASAAGCVLANRLSEVSSLKVLLIEAGG  467 (720)
Q Consensus       432 ~eyDVVIIGSGiAGLvAA~~LAea~G~KVLVLEKG~  467 (720)
                      .++||||||||++|+++|+.|+++ |++|+||||..
T Consensus         5 ~~~dVvIVGaG~aGl~~A~~L~~~-G~~V~viE~~~   39 (399)
T 2x3n_A            5 NHIDVLINGCGIGGAMLAYLLGRQ-GHRVVVVEQAR   39 (399)
T ss_dssp             CEEEEEEECCSHHHHHHHHHHHHT-TCCEEEECSSC
T ss_pred             CcCCEEEECcCHHHHHHHHHHHhC-CCcEEEEeCCC
Confidence            357999999999999999999999 99999999984

>3k7m_X 6-hydroxy-L-nicotine oxidase; enantiomeric substrates, flavoenzymes, nicotine degradation, oxidoreductase; HET: FAD GP7; 1.95A {Arthrobacter nicotinovorans} PDB: 3k7q_X* 3ng7_X* 3ngc_X* 3nh3_X* 3nho_X* 3nk0_X* 3nk1_X* 3nk2_X* 3nn0_X* 3nn6_X* 3k7t_A*

Probab=98.92  E-value=4.3e-09  Score=113.47  Aligned_cols=38  Identities=34%  Similarity=0.487  Sum_probs=34.4

Q ss_pred             ccEEEECCcHHHHHHHHHHHhcCCCcEEEEccCCCCCCC
Q psy14408        434 FDIIIVGASAAGCVLANRLSEVSSLKVLLIEAGGDTPIH  472 (720)
Q Consensus       434 yDVVIIGSGiAGLvAA~~LAea~G~KVLVLEKG~~~~~s  472 (720)
                      +||||||||++|++||++|+++ |++|+||||....++.
T Consensus         2 ~dVvVIGaG~aGl~aA~~L~~~-G~~V~vlE~~~~~GG~   39 (431)
T 3k7m_X            2 YDAIVVGGGFSGLKAARDLTNA-GKKVLLLEGGERLGGR   39 (431)
T ss_dssp             EEEEEECCBHHHHHHHHHHHHT-TCCEEEECSSSSSBTT
T ss_pred             CCEEEECCcHHHHHHHHHHHHc-CCeEEEEecCCCccCe
Confidence            6999999999999999999999 9999999997666443

>3i6d_A Protoporphyrinogen oxidase; protein-inhibitor complex, cytoplasm, FAD, flavoprotein, oxidoreductase, porphyrin biosynthesis; HET: FAD ACJ; 2.90A {Bacillus subtilis}

Probab=98.90  E-value=1.7e-08  Score=109.33  Aligned_cols=39  Identities=21%  Similarity=0.247  Sum_probs=35.2

Q ss_pred             cccEEEECCcHHHHHHHHHHHhcCC------CcEEEEccCCCCCCC
Q psy14408        433 CFDIIIVGASAAGCVLANRLSEVSS------LKVLLIEAGGDTPIH  472 (720)
Q Consensus       433 eyDVVIIGSGiAGLvAA~~LAea~G------~KVLVLEKG~~~~~s  472 (720)
                      .+||||||||++||+||++|+++ |      ++|+||||....++.
T Consensus         5 ~~dVvIIGaGiaGLsaA~~L~~~-G~~~~~~~~V~vlEa~~~~GG~   49 (470)
T 3i6d_A            5 KKHVVIIGGGITGLAAAFYMEKE-IKEKNLPLELTLVEASPRVGGK   49 (470)
T ss_dssp             CEEEEEECCSHHHHHHHHHHHHH-HTTTTCSEEEEEECSSSSSCTT
T ss_pred             CCcEEEECCCHHHHHHHHHHHHh-ccccCCCCCEEEEECCCCCCce
Confidence            47999999999999999999999 9      999999998766543

>2gjc_A Thiazole biosynthetic enzyme, mitochondrial; glutathione reductase type II family, thiazole synthase, mitochondria DNA repair; HET: AHZ; 1.82A {Saccharomyces cerevisiae} PDB: 3fpz_A*

Probab=98.89  E-value=2.4e-08  Score=106.84  Aligned_cols=38  Identities=34%  Similarity=0.401  Sum_probs=33.6

Q ss_pred             CCcccEEEECCcHHHHHHHHHHHhc-CCCcEEEEccCCC
Q psy14408        431 GDCFDIIIVGASAAGCVLANRLSEV-SSLKVLLIEAGGD  468 (720)
Q Consensus       431 d~eyDVVIIGSGiAGLvAA~~LAea-~G~KVLVLEKG~~  468 (720)
                      ..++||||||||++|++||+.|+++ +|++|+|+||+..
T Consensus        63 ~~~~dv~IiG~G~aGl~aA~~la~~~~g~~V~v~e~~~~  101 (326)
T 2gjc_A           63 FAVSDVIIVGAGSSGLSAAYVIAKNRPDLKVCIIESSVA  101 (326)
T ss_dssp             TTEESEEEECCSHHHHHHHHHHHHHCTTSCEEEECSSSS
T ss_pred             cCcCCEEEECccHHHHHHHHHHHhcCCCCeEEEEecCcc
Confidence            3568999999999999999999986 3899999999853

>3kkj_A Amine oxidase, flavin-containing; oxidoreductase, PSR10, Q888A4, X-RAY, structure, PSI, protein structure initiative; HET: FAD; 2.50A {Pseudomonas syringae PV}

Probab=98.87  E-value=1.3e-09  Score=103.60  Aligned_cols=38  Identities=24%  Similarity=0.305  Sum_probs=34.4

Q ss_pred             CcccEEEECCcHHHHHHHHHHHhcCCCcEEEEccCCCCC
Q psy14408        432 DCFDIIIVGASAAGCVLANRLSEVSSLKVLLIEAGGDTP  470 (720)
Q Consensus       432 ~eyDVVIIGSGiAGLvAA~~LAea~G~KVLVLEKG~~~~  470 (720)
                      +++||+|||||++||+||+.|+++ |++|+||||+..++
T Consensus         1 Mt~dV~IIGaGpaGL~aA~~La~~-G~~V~v~Ek~~~~G   38 (336)
T 3kkj_A            1 MTVPIAIIGTGIAGLSAAQALTAA-GHQVHLFDKSRGSG   38 (336)
T ss_dssp             -CCCEEEECCSHHHHHHHHHHHHT-TCCEEEECSSSSSC
T ss_pred             CCCCEEEECcCHHHHHHHHHHHHC-CCCEEEEECCCCCC
Confidence            358999999999999999999999 99999999987654

>3f8d_A Thioredoxin reductase (TRXB-3); redox protein, nucleotide binding, FAD, flavoprotein, oxidoreductase; HET: FAD; 1.40A {Sulfolobus solfataricus} PDB: 3f8p_A* 3f8r_A*

Probab=98.87  E-value=7.9e-09  Score=105.66  Aligned_cols=67  Identities=22%  Similarity=0.288  Sum_probs=53.0

Q ss_pred             HHHHHHhcCCCeEEEcCeEEEEEEEccCCcEEEEEEEec-CCcEEEEEcCcEEEEccCCcchHHHHHHcCCC
Q psy14408        639 YLTPIAGKRTNLYVLKRSKVTKVIINDQNVATGVEYVNS-KGETVRVTANKEVILTAGAIANAQLLLLSGIG  709 (720)
Q Consensus       639 ~L~~Aa~e~aGVkIi~gt~VtkIl~e~gGrAtGV~v~dt-~G~e~tIkAkK~VVVAAGa~~Sp~LLl~SGIg  709 (720)
                      ++..+. ++.|++|+.+++|++|..+  +++.+|++.+. +|++.++.++ .||+|+|......+|..+|+.
T Consensus       195 ~~~~~~-~~~gv~~~~~~~v~~i~~~--~~~~~v~~~~~~~g~~~~~~~D-~vv~a~G~~p~~~~~~~~g~~  262 (323)
T 3f8d_A          195 YVETVK-KKPNVEFVLNSVVKEIKGD--KVVKQVVVENLKTGEIKELNVN-GVFIEIGFDPPTDFAKSNGIE  262 (323)
T ss_dssp             HHHHHH-TCTTEEEECSEEEEEEEES--SSEEEEEEEETTTCCEEEEECS-EEEECCCEECCHHHHHHTTCC
T ss_pred             HHHHHH-hCCCcEEEeCCEEEEEecc--CceeEEEEEECCCCceEEEEcC-EEEEEECCCCChhHHhhcCee
Confidence            455555 4569999999999999865  56778888763 5766789998 599999987777888888775

>3fg2_P Putative rubredoxin reductase; ferredoxin reductase, RPA3782, F flavoprotein, oxidoreductase; HET: FAD; 2.20A {Rhodopseudomonas palustris}

Probab=98.87  E-value=2.5e-08  Score=107.74  Aligned_cols=66  Identities=17%  Similarity=0.328  Sum_probs=53.0

Q ss_pred             HHHHHHHhcCCCeEEEcCeEEEEEEEccCCcEEEEEEEecCCcEEEEEcCcEEEEccCCcchHHHHHHcCCCC
Q psy14408        638 AYLTPIAGKRTNLYVLKRSKVTKVIINDQNVATGVEYVNSKGETVRVTANKEVILTAGAIANAQLLLLSGIGP  710 (720)
Q Consensus       638 a~L~~Aa~e~aGVkIi~gt~VtkIl~e~gGrAtGV~v~dt~G~e~tIkAkK~VVVAAGa~~Sp~LLl~SGIgp  710 (720)
                      .++.+.+ ++.|++|++++.|++|..+ ++++.+|++.+  |+  ++.|+ .||+|+|......++..+|+.-
T Consensus       188 ~~l~~~l-~~~GV~i~~~~~v~~i~~~-~~~v~~V~~~d--G~--~i~aD-~Vv~a~G~~p~~~l~~~~gl~~  253 (404)
T 3fg2_P          188 SYFHDRH-SGAGIRMHYGVRATEIAAE-GDRVTGVVLSD--GN--TLPCD-LVVVGVGVIPNVEIAAAAGLPT  253 (404)
T ss_dssp             HHHHHHH-HHTTCEEECSCCEEEEEEE-TTEEEEEEETT--SC--EEECS-EEEECCCEEECCHHHHHTTCCB
T ss_pred             HHHHHHH-HhCCcEEEECCEEEEEEec-CCcEEEEEeCC--CC--EEEcC-EEEECcCCccCHHHHHhCCCCC
Confidence            4455555 5789999999999999987 78888888755  64  68898 6999999877777888888763

>2cul_A Glucose-inhibited division protein A-related PROT probable oxidoreductase; rossmann fold, protein-FAD complex; HET: FAD; 1.65A {Thermus thermophilus} SCOP: c.3.1.7

Probab=98.86  E-value=1.9e-08  Score=100.83  Aligned_cols=34  Identities=26%  Similarity=0.444  Sum_probs=32.5

Q ss_pred             CcccEEEECCcHHHHHHHHHHHhcCCCcEEEEccC
Q psy14408        432 DCFDIIIVGASAAGCVLANRLSEVSSLKVLLIEAG  466 (720)
Q Consensus       432 ~eyDVVIIGSGiAGLvAA~~LAea~G~KVLVLEKG  466 (720)
                      .++||||||||++|+.+|..|++. |++|+|||++
T Consensus         2 ~~~dVvVVGgG~aGl~aA~~la~~-g~~v~lie~~   35 (232)
T 2cul_A            2 AAYQVLIVGAGFSGAETAFWLAQK-GVRVGLLTQS   35 (232)
T ss_dssp             CCCSEEEECCSHHHHHHHHHHHHT-TCCEEEEESC
T ss_pred             CCCCEEEECcCHHHHHHHHHHHHC-CCCEEEEecC
Confidence            468999999999999999999999 9999999997

>1d5t_A Guanine nucleotide dissociation inhibitor; ultra-high resolution, hydrolase inhibitor; 1.04A {Bos taurus} SCOP: c.3.1.3 d.16.1.6 PDB: 1lv0_A* 1gnd_A

Probab=98.85  E-value=5.2e-09  Score=114.78  Aligned_cols=40  Identities=23%  Similarity=0.387  Sum_probs=36.4

Q ss_pred             CcccEEEECCcHHHHHHHHHHHhcCCCcEEEEccCCCCCCC
Q psy14408        432 DCFDIIIVGASAAGCVLANRLSEVSSLKVLLIEAGGDTPIH  472 (720)
Q Consensus       432 ~eyDVVIIGSGiAGLvAA~~LAea~G~KVLVLEKG~~~~~s  472 (720)
                      .++||||||||++|+++|..|+++ |++|+||||+...++.
T Consensus         5 ~~~~v~iiG~G~~gl~~a~~l~~~-g~~v~~~e~~~~~gg~   44 (433)
T 1d5t_A            5 EEYDVIVLGTGLTECILSGIMSVN-GKKVLHMDRNPYYGGE   44 (433)
T ss_dssp             SBCSEEEECCSHHHHHHHHHHHHT-TCCEEEECSSSSSCTT
T ss_pred             CcCCEEEECcCHHHHHHHHHHHHC-CCcEEEEecCCCcccc
Confidence            468999999999999999999999 9999999998777554

>3qj4_A Renalase; FAD/NAD(P)-binding rossmann fold superfamily, flavin contain oxidoreductase, monoamine oxidase, NAD, extracellular, oxidoreductase; HET: FAD; 2.50A {Homo sapiens}

Probab=98.82  E-value=5.1e-09  Score=109.94  Aligned_cols=35  Identities=26%  Similarity=0.392  Sum_probs=32.2

Q ss_pred             ccEEEECCcHHHHHHHHHHHh---cCCCcEEEEccCCCC
Q psy14408        434 FDIIIVGASAAGCVLANRLSE---VSSLKVLLIEAGGDT  469 (720)
Q Consensus       434 yDVVIIGSGiAGLvAA~~LAe---a~G~KVLVLEKG~~~  469 (720)
                      .||||||||++|++||+.|++   + |++|+||||+...
T Consensus         2 ~dV~IIGaG~aGl~~A~~L~~~~~~-G~~V~v~Ek~~~~   39 (342)
T 3qj4_A            2 AQVLIVGAGMTGSLCAALLRRQTSG-PLYLAVWDKADDS   39 (342)
T ss_dssp             EEEEEECCSHHHHHHHHHHHSCC-C-CEEEEEECSSSSS
T ss_pred             CcEEEECCcHHHHHHHHHHHhhccC-CceEEEEECCCCC
Confidence            499999999999999999999   8 9999999998543

>4a9w_A Monooxygenase; baeyer-villiger, FAD, oxidoreductase; HET: FAD; 2.72A {Stenotrophomonas maltophilia}

Probab=98.82  E-value=1.4e-08  Score=105.15  Aligned_cols=36  Identities=19%  Similarity=0.450  Sum_probs=33.2

Q ss_pred             CcccEEEECCcHHHHHHHHHHHhcCCCcEEEEccCCC
Q psy14408        432 DCFDIIIVGASAAGCVLANRLSEVSSLKVLLIEAGGD  468 (720)
Q Consensus       432 ~eyDVVIIGSGiAGLvAA~~LAea~G~KVLVLEKG~~  468 (720)
                      ..+||||||||++|+++|+.|+++ |++|+||||+..
T Consensus         2 ~~~~vvIIG~G~aGl~~A~~l~~~-g~~v~vie~~~~   37 (357)
T 4a9w_A            2 DSVDVVVIGGGQSGLSAGYFLRRS-GLSYVILDAEAS   37 (357)
T ss_dssp             EEEEEEEECCSHHHHHHHHHHHHS-SCCEEEECCSSS
T ss_pred             CcCCEEEECcCHHHHHHHHHHHHC-CCCEEEEECCCC
Confidence            358999999999999999999999 999999999843

>2qa1_A PGAE, polyketide oxygenase PGAE; FAD, angucycline, aromatic hydroxylase, oxidored; HET: FAD; 1.80A {Streptomyces}

Probab=98.82  E-value=3.5e-08  Score=110.44  Aligned_cols=40  Identities=28%  Similarity=0.373  Sum_probs=35.2

Q ss_pred             ccCCCcccEEEECCcHHHHHHHHHHHhcCCCcEEEEccCCC
Q psy14408        428 VKSGDCFDIIIVGASAAGCVLANRLSEVSSLKVLLIEAGGD  468 (720)
Q Consensus       428 I~~d~eyDVVIIGSGiAGLvAA~~LAea~G~KVLVLEKG~~  468 (720)
                      ++.+.++||||||||++||++|+.|+++ |++|+||||...
T Consensus         6 ~~~~~~~dVlIVGaGpaGl~~A~~La~~-G~~v~vlE~~~~   45 (500)
T 2qa1_A            6 HHHRSDAAVIVVGAGPAGMMLAGELRLA-GVEVVVLERLVE   45 (500)
T ss_dssp             --CCSBCSEEEECCSHHHHHHHHHHHHT-TCCEEEEESCCC
T ss_pred             CCccCCCCEEEECcCHHHHHHHHHHHHC-CCCEEEEeCCCC
Confidence            4566789999999999999999999999 999999999843

>2zxi_A TRNA uridine 5-carboxymethylaminomethyl modificat MNMG; modification, 5-carboxymethylaminomethyl uridine, WOBB uridine, FAD; HET: FAD; 2.30A {Aquifex aeolicus} PDB: 2zxh_A* 2e57_A*

Probab=98.82  E-value=1.6e-08  Score=116.83  Aligned_cols=52  Identities=25%  Similarity=0.520  Sum_probs=40.2

Q ss_pred             HHHHHHHhcC-CCeEEEcCeEEEEEEEccCCcEEEEEEEecCCcEEEEEcCcEEEEccCCc
Q psy14408        638 AYLTPIAGKR-TNLYVLKRSKVTKVIINDQNVATGVEYVNSKGETVRVTANKEVILTAGAI  697 (720)
Q Consensus       638 a~L~~Aa~e~-aGVkIi~gt~VtkIl~e~gGrAtGV~v~dt~G~e~tIkAkK~VVVAAGa~  697 (720)
                      ..|.+.+ ++ .|++|+ ++.|++|+.+ ++++.||++.+  |.  +++|+ .||+|+|++
T Consensus       127 ~~L~~~L-e~~~GVeI~-~~~Vt~L~~e-~g~V~GV~t~d--G~--~i~Ad-aVVLATG~~  179 (637)
T 2zxi_A          127 EYMKKVC-ENQENLYIK-QEEVVDIIVK-NNQVVGVRTNL--GV--EYKTK-AVVVTTGTF  179 (637)
T ss_dssp             HHHHHHH-HTCTTEEEE-ESCEEEEEES-SSBEEEEEETT--SC--EEECS-EEEECCTTC
T ss_pred             HHHHHHH-HhCCCCEEE-EeEEEEEEec-CCEEEEEEECC--Cc--EEEeC-EEEEccCCC
Confidence            4455555 35 699995 6799999998 88899998754  63  68997 699999985

>3rp8_A Flavoprotein monooxygenase; FAD-binding protein, oxidoreductase; HET: FAD; 1.97A {Klebsiella pneumoniae} PDB: 3rp7_A* 3rp6_A*

Probab=98.81  E-value=1.3e-08  Score=109.30  Aligned_cols=39  Identities=21%  Similarity=0.216  Sum_probs=32.8

Q ss_pred             ccCCCcccEEEECCcHHHHHHHHHHHhcCCCcEEEEccCC
Q psy14408        428 VKSGDCFDIIIVGASAAGCVLANRLSEVSSLKVLLIEAGG  467 (720)
Q Consensus       428 I~~d~eyDVVIIGSGiAGLvAA~~LAea~G~KVLVLEKG~  467 (720)
                      .+....+||||||||++||++|+.|+++ |++|+||||..
T Consensus        18 ~~~~~~~dV~IVGaG~aGl~~A~~La~~-G~~V~v~E~~~   56 (407)
T 3rp8_A           18 LYFQGHMKAIVIGAGIGGLSAAVALKQS-GIDCDVYEAVK   56 (407)
T ss_dssp             -----CCEEEEECCSHHHHHHHHHHHHT-TCEEEEEESSS
T ss_pred             ccCCCCCEEEEECCCHHHHHHHHHHHhC-CCCEEEEeCCC
Confidence            4455678999999999999999999999 99999999984

>3nks_A Protoporphyrinogen oxidase; FAD containing protein, PPO, variegate porphyria disease, VP oxidoreductase-oxidoreductase inhibitor complex; HET: ACJ FAD; 1.90A {Homo sapiens}

Probab=98.81  E-value=6.7e-09  Score=113.44  Aligned_cols=38  Identities=21%  Similarity=0.325  Sum_probs=34.7

Q ss_pred             ccEEEECCcHHHHHHHHHHHhcCCC--cEEEEccCCCCCCC
Q psy14408        434 FDIIIVGASAAGCVLANRLSEVSSL--KVLLIEAGGDTPIH  472 (720)
Q Consensus       434 yDVVIIGSGiAGLvAA~~LAea~G~--KVLVLEKG~~~~~s  472 (720)
                      .||||||||++||+||++|+++ |+  +|+||||+...++.
T Consensus         3 ~dVvVIGaGiaGLsaA~~L~~~-G~~~~V~vlEa~~~~GG~   42 (477)
T 3nks_A            3 RTVVVLGGGISGLAASYHLSRA-PCPPKVVLVESSERLGGW   42 (477)
T ss_dssp             CEEEEECCBHHHHHHHHHHHTS-SSCCEEEEECSSSSSBTT
T ss_pred             ceEEEECCcHHHHHHHHHHHhC-CCCCcEEEEeCCCCCCCc
Confidence            5999999999999999999999 99  99999998776544

>1k0i_A P-hydroxybenzoate hydroxylase; PHBH, FAD, P-OHB, hydrolase; HET: FAD PHB; 1.80A {Pseudomonas aeruginosa} SCOP: c.3.1.2 d.16.1.2 PDB: 1k0j_A* 1k0l_A* 1doc_A* 1d7l_A* 1dod_A* 1doe_A* 1ius_A* 1iut_A* 1iuu_A* 1iuv_A* 1iuw_A* 1iux_A* 1pxb_A* 1pxc_A* 1dob_A* 1ykj_A* 1pxa_A* 1pbe_A* 1pdh_A* 1phh_A* ...

Probab=98.81  E-value=8.1e-09  Score=110.16  Aligned_cols=34  Identities=21%  Similarity=0.402  Sum_probs=32.2

Q ss_pred             cccEEEECCcHHHHHHHHHHHhcCCCcEEEEccCC
Q psy14408        433 CFDIIIVGASAAGCVLANRLSEVSSLKVLLIEAGG  467 (720)
Q Consensus       433 eyDVVIIGSGiAGLvAA~~LAea~G~KVLVLEKG~  467 (720)
                      ++||||||||++||++|+.|+++ |++|+||||..
T Consensus         2 ~~dV~IvGaG~aGl~~A~~L~~~-G~~v~v~E~~~   35 (394)
T 1k0i_A            2 KTQVAIIGAGPSGLLLGQLLHKA-GIDNVILERQT   35 (394)
T ss_dssp             BCSEEEECCSHHHHHHHHHHHHH-TCCEEEECSSC
T ss_pred             CccEEEECCCHHHHHHHHHHHHC-CCCEEEEeCCC
Confidence            57999999999999999999999 99999999974

>3g3e_A D-amino-acid oxidase; FAD, flavoprotein, oxidoreductase, PER; HET: FAD G3E; 2.20A {Homo sapiens} PDB: 3cuk_A* 2e48_A* 2e49_A* 2e4a_A* 2e82_A* 2du8_A* 1ve9_A* 1dao_A* 1ddo_A* 1kif_A* 1an9_A* 1evi_A*

Probab=98.80  E-value=1.8e-10  Score=121.16  Aligned_cols=32  Identities=19%  Similarity=0.243  Sum_probs=30.7

Q ss_pred             cEEEECCcHHHHHHHHHHHhcCC------CcEEEEccCC
Q psy14408        435 DIIIVGASAAGCVLANRLSEVSS------LKVLLIEAGG  467 (720)
Q Consensus       435 DVVIIGSGiAGLvAA~~LAea~G------~KVLVLEKG~  467 (720)
                      ||||||||++||++|++|+++ |      ++|+||||+.
T Consensus         2 dVvIIGgGi~Gls~A~~La~~-G~~~~p~~~V~vlE~~~   39 (351)
T 3g3e_A            2 RVVVIGAGVIGLSTALCIHER-YHSVLQPLDIKVYADRF   39 (351)
T ss_dssp             EEEEECCSHHHHHHHHHHHHH-HTTTSSSCEEEEEESSC
T ss_pred             cEEEECCCHHHHHHHHHHHHh-ccccCCCceEEEEECCC
Confidence            999999999999999999999 8      9999999984

>3ces_A MNMG, tRNA uridine 5-carboxymethylaminomethyl modificat GIDA, GIDA; tRNA modification, FAD binding domain, structural genomics; 2.41A {Escherichia coli} PDB: 3cp2_A 3g05_A

Probab=98.80  E-value=1.6e-08  Score=117.12  Aligned_cols=34  Identities=32%  Similarity=0.508  Sum_probs=32.6

Q ss_pred             CcccEEEECCcHHHHHHHHHHHhcCCCcEEEEccC
Q psy14408        432 DCFDIIIVGASAAGCVLANRLSEVSSLKVLLIEAG  466 (720)
Q Consensus       432 ~eyDVVIIGSGiAGLvAA~~LAea~G~KVLVLEKG  466 (720)
                      .++||||||||.+|++||+.||+. |++|+|||++
T Consensus        27 ~~yDVIVIGgG~AGl~AAlaLAr~-G~kVlLIEk~   60 (651)
T 3ces_A           27 DPFDVIIIGGGHAGTEAAMAAARM-GQQTLLLTHN   60 (651)
T ss_dssp             SCEEEEEECCSHHHHHHHHHHHHT-TCCEEEEESC
T ss_pred             CcCCEEEECChHHHHHHHHHHHhC-CCCEEEEeec
Confidence            468999999999999999999999 9999999997

>3lov_A Protoporphyrinogen oxidase; structural genomics, JO center for structural genomics, JCSG, protein structure INI PSI-2; HET: FAD; 2.06A {Exiguobacterium sibiricum}

Probab=98.78  E-value=4.1e-08  Score=107.48  Aligned_cols=39  Identities=26%  Similarity=0.301  Sum_probs=35.0

Q ss_pred             CcccEEEECCcHHHHHHHHHHHhcCC--CcEEEEccCCCCCC
Q psy14408        432 DCFDIIIVGASAAGCVLANRLSEVSS--LKVLLIEAGGDTPI  471 (720)
Q Consensus       432 ~eyDVVIIGSGiAGLvAA~~LAea~G--~KVLVLEKG~~~~~  471 (720)
                      ..+||||||||++||+||++|+++ |  ++|+||||....++
T Consensus         3 ~~~~v~IiGaG~~Gl~~A~~L~~~-g~~~~v~v~E~~~~~GG   43 (475)
T 3lov_A            3 SSKRLVIVGGGITGLAAAYYAERA-FPDLNITLLEAGERLGG   43 (475)
T ss_dssp             CSCEEEEECCBHHHHHHHHHHHHH-CTTSEEEEECSSSSSBT
T ss_pred             CcccEEEECCCHHHHHHHHHHHHh-CCCCCEEEEECCCCCCc
Confidence            357999999999999999999999 9  99999999876644

>1mo9_A ORF3; nucleotide binding motifs, nucleotide binding domain, oxidor; HET: FAD KPC; 1.65A {Xanthobacter autotrophicus} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1mok_A* 2c3c_A* 2c3d_A* 3q6j_A*

Probab=98.78  E-value=1.1e-07  Score=106.82  Aligned_cols=69  Identities=22%  Similarity=0.348  Sum_probs=50.0

Q ss_pred             HHHHHHHhcCCCeEEEcCeEEEEEEEccCCcEEEEEEEecCCcEEEEEcCcEEEEccCCcchHH-HHHHcCCC
Q psy14408        638 AYLTPIAGKRTNLYVLKRSKVTKVIINDQNVATGVEYVNSKGETVRVTANKEVILTAGAIANAQ-LLLLSGIG  709 (720)
Q Consensus       638 a~L~~Aa~e~aGVkIi~gt~VtkIl~e~gGrAtGV~v~dt~G~e~tIkAkK~VVVAAGa~~Sp~-LLl~SGIg  709 (720)
                      ..+.+.+ ++.|++|+++++|++|..++++++.|+.+...+|+ .++.|+. ||+|+|...... +|...|+.
T Consensus       259 ~~l~~~l-~~~GV~i~~~~~V~~i~~~~~~~v~~~~v~~~~G~-~~i~aD~-Vv~A~G~~p~~~~~l~~~gl~  328 (523)
T 1mo9_A          259 AYVLDRM-KEQGMEIISGSNVTRIEEDANGRVQAVVAMTPNGE-MRIETDF-VFLGLGEQPRSAELAKILGLD  328 (523)
T ss_dssp             HHHHHHH-HHTTCEEESSCEEEEEEECTTSBEEEEEEEETTEE-EEEECSC-EEECCCCEECCHHHHHHHTCC
T ss_pred             HHHHHHH-HhCCcEEEECCEEEEEEEcCCCceEEEEEEECCCc-EEEEcCE-EEECcCCccCCccCHHHcCCc
Confidence            3455555 57899999999999998753456656655543452 3789984 999999876666 78887775

>2ivd_A PPO, PPOX, protoporphyrinogen oxidase; porphyrin biosynthesis, chlorophyll biosynthesis, oxidoreductase, HAEM biosynthesis, heme biosynthesis; HET: ACJ FAD TWN; 2.3A {Myxococcus xanthus} SCOP: c.3.1.2 d.16.1.5 PDB: 2ive_A*

Probab=98.78  E-value=8.2e-09  Score=112.92  Aligned_cols=42  Identities=17%  Similarity=0.285  Sum_probs=35.1

Q ss_pred             CCCcccEEEECCcHHHHHHHHHHHhcCCCcEEEEccCCCCCCC
Q psy14408        430 SGDCFDIIIVGASAAGCVLANRLSEVSSLKVLLIEAGGDTPIH  472 (720)
Q Consensus       430 ~d~eyDVVIIGSGiAGLvAA~~LAea~G~KVLVLEKG~~~~~s  472 (720)
                      ....+||||||||++||+||+.|+++ |++|+||||....++.
T Consensus        13 ~~~~~~v~iiG~G~~Gl~aa~~l~~~-g~~v~v~E~~~~~GGr   54 (478)
T 2ivd_A           13 RTTGMNVAVVGGGISGLAVAHHLRSR-GTDAVLLESSARLGGA   54 (478)
T ss_dssp             ----CCEEEECCBHHHHHHHHHHHTT-TCCEEEECSSSSSBTT
T ss_pred             CCCCCcEEEECCCHHHHHHHHHHHHC-CCCEEEEEcCCCCCce
Confidence            34467999999999999999999999 9999999998776544

>3o0h_A Glutathione reductase; ssgcid, structur genomics, seattle structural genomics center for infectious gluathione reductase, oxidoreductase; HET: FAD; 1.90A {Bartonella henselae}

Probab=98.78  E-value=2.6e-08  Score=110.40  Aligned_cols=63  Identities=21%  Similarity=0.342  Sum_probs=44.3

Q ss_pred             HHHHHHhcCCCeEEEcCeEEEEEEEccCCcEEEEEEEecCCcEEEEEcCcEEEEccCCcchHHH--HHHcCCC
Q psy14408        639 YLTPIAGKRTNLYVLKRSKVTKVIINDQNVATGVEYVNSKGETVRVTANKEVILTAGAIANAQL--LLLSGIG  709 (720)
Q Consensus       639 ~L~~Aa~e~aGVkIi~gt~VtkIl~e~gGrAtGV~v~dt~G~e~tIkAkK~VVVAAGa~~Sp~L--Ll~SGIg  709 (720)
                      .+.+.+ ++.|++|+++++|++|..+ ++++ .|++.  +|+  ++.|+ .||+|+|......+  |...|+.
T Consensus       237 ~l~~~l-~~~Gv~i~~~~~V~~i~~~-~~~v-~v~~~--~g~--~i~aD-~Vi~A~G~~p~~~~l~l~~~g~~  301 (484)
T 3o0h_A          237 LLNDAM-VAKGISIIYEATVSQVQST-ENCY-NVVLT--NGQ--TICAD-RVMLATGRVPNTTGLGLERAGVK  301 (484)
T ss_dssp             HHHHHH-HHHTCEEESSCCEEEEEEC-SSSE-EEEET--TSC--EEEES-EEEECCCEEECCTTCCHHHHTCC
T ss_pred             HHHHHH-HHCCCEEEeCCEEEEEEee-CCEE-EEEEC--CCc--EEEcC-EEEEeeCCCcCCCCCChhhcCce
Confidence            444444 4779999999999999887 5554 45443  353  68898 59999997655554  5666664

>2qa2_A CABE, polyketide oxygenase CABE; FAD, angucycline, aromatic hydroxylase, oxidored; HET: FAD; 2.70A {Streptomyces}

Probab=98.77  E-value=5.6e-08  Score=108.79  Aligned_cols=38  Identities=29%  Similarity=0.382  Sum_probs=33.7

Q ss_pred             CCCcccEEEECCcHHHHHHHHHHHhcCCCcEEEEccCCC
Q psy14408        430 SGDCFDIIIVGASAAGCVLANRLSEVSSLKVLLIEAGGD  468 (720)
Q Consensus       430 ~d~eyDVVIIGSGiAGLvAA~~LAea~G~KVLVLEKG~~  468 (720)
                      +..++||||||||++||++|+.|+++ |++|+||||...
T Consensus         9 ~~~~~dVlIVGaGpaGl~~A~~La~~-G~~v~vlE~~~~   46 (499)
T 2qa2_A            9 HRSDASVIVVGAGPAGLMLAGELRLG-GVDVMVLEQLPQ   46 (499)
T ss_dssp             --CCEEEEEECCSHHHHHHHHHHHHT-TCCEEEEESCSS
T ss_pred             cCCCCCEEEECcCHHHHHHHHHHHHC-CCCEEEEECCCC
Confidence            44678999999999999999999999 999999999743

>2weu_A Tryptophan 5-halogenase; regioselectivity, antifungal protei; HET: TRP; 1.70A {Streptomyces rugosporus} PDB: 2wet_A* 2wes_A*

Probab=98.73  E-value=5.9e-08  Score=107.79  Aligned_cols=58  Identities=14%  Similarity=0.162  Sum_probs=41.6

Q ss_pred             HHHHHHHHHHhcCCCeEEEcCeEEEEEEEccCCcEEEEEEEecCCcEEEEEcCcEEEEccCCcchH
Q psy14408        635 AADAYLTPIAGKRTNLYVLKRSKVTKVIINDQNVATGVEYVNSKGETVRVTANKEVILTAGAIANA  700 (720)
Q Consensus       635 aa~a~L~~Aa~e~aGVkIi~gt~VtkIl~e~gGrAtGV~v~dt~G~e~tIkAkK~VVVAAGa~~Sp  700 (720)
                      ....+|.+.+ ++.|++++.+ +|++|..++++++.+|++.+  |+  +++|+ .||.|+|. ++.
T Consensus       174 ~l~~~L~~~a-~~~gv~~~~~-~v~~i~~~~~~~~~~v~~~~--g~--~~~ad-~vV~A~G~-~S~  231 (511)
T 2weu_A          174 EVARYLSEYA-IARGVRHVVD-DVQHVGQDERGWISGVHTKQ--HG--EISGD-LFVDCTGF-RGL  231 (511)
T ss_dssp             HHHHHHHHHH-HHTTCEEEEC-CEEEEEECTTSCEEEEEESS--SC--EEECS-EEEECCGG-GCC
T ss_pred             HHHHHHHHHH-HHCCCEEEEC-eEeEEEEcCCCCEEEEEECC--CC--EEEcC-EEEECCCc-chH
Confidence            3444555555 4689999999 99999985356777777644  53  68997 58888886 443

>2bry_A NEDD9 interacting protein with calponin homology and LIM domains; transport, coiled coil, cytoskeleton, FAD, flavoprotein, metal-binding, zinc; HET: FAD; 1.45A {Mus musculus} PDB: 2c4c_A* 2bra_A*

Probab=98.72  E-value=1.6e-08  Score=113.26  Aligned_cols=37  Identities=24%  Similarity=0.289  Sum_probs=33.7

Q ss_pred             CCcccEEEECCcHHHHHHHHHHHhcCCCcEEEEccCCC
Q psy14408        431 GDCFDIIIVGASAAGCVLANRLSEVSSLKVLLIEAGGD  468 (720)
Q Consensus       431 d~eyDVVIIGSGiAGLvAA~~LAea~G~KVLVLEKG~~  468 (720)
                      ...+||||||||++|+++|+.|++. |++|+||||+..
T Consensus        90 ~~~~dVvIVGgG~aGl~aA~~La~~-G~~V~liEk~~~  126 (497)
T 2bry_A           90 CTNTKCLVVGAGPCGLRAAVELALL-GARVVLVEKRIK  126 (497)
T ss_dssp             TTTCEEEEECCSHHHHHHHHHHHHT-TCEEEEEESCSS
T ss_pred             cCCCCEEEECccHHHHHHHHHHHHC-CCeEEEEEeccc
Confidence            3467999999999999999999999 999999999843

>3r9u_A Thioredoxin reductase; structural genomics, center for structural genomics of infec diseases, csgid, thioredoxin-disulfide reductase, FAD; HET: FAD; 2.36A {Campylobacter jejuni}

Probab=98.72  E-value=2.5e-08  Score=101.76  Aligned_cols=63  Identities=13%  Similarity=0.182  Sum_probs=49.1

Q ss_pred             HHHHHHhcCCCeEEEcCeEEEEEEEccCCcEEEEEEEecCCcEEEEEcCcEEEEccCCcchHHHHH
Q psy14408        639 YLTPIAGKRTNLYVLKRSKVTKVIINDQNVATGVEYVNSKGETVRVTANKEVILTAGAIANAQLLL  704 (720)
Q Consensus       639 ~L~~Aa~e~aGVkIi~gt~VtkIl~e~gGrAtGV~v~dt~G~e~tIkAkK~VVVAAGa~~Sp~LLl  704 (720)
                      ++..++ ++.|++|+.++.|++|..+ ++++.+|++...+|++.++.++ .||+|+|......++.
T Consensus       188 ~~~~~~-~~~gv~~~~~~~v~~i~~~-~~~~~~v~~~~~~g~~~~~~~D-~vv~a~G~~p~~~~~~  250 (315)
T 3r9u_A          188 TVEKVK-KNEKIELITSASVDEVYGD-KMGVAGVKVKLKDGSIRDLNVP-GIFTFVGLNVRNEILK  250 (315)
T ss_dssp             HHHHHH-HCTTEEEECSCEEEEEEEE-TTEEEEEEEECTTSCEEEECCS-CEEECSCEEECCGGGB
T ss_pred             HHHHHH-hcCCeEEEeCcEEEEEEcC-CCcEEEEEEEcCCCCeEEeecC-eEEEEEcCCCCchhhh
Confidence            444554 5789999999999999887 7788999988445776789998 5999999765555543

>3cp8_A TRNA uridine 5-carboxymethylaminomethyl modification enzyme GIDA; rossmann fold, FAD-binding domain, dinucleotide-binding motif; HET: FAD; 3.20A {Chlorobium tepidum}

Probab=98.72  E-value=2.3e-08  Score=115.70  Aligned_cols=36  Identities=36%  Similarity=0.617  Sum_probs=32.6

Q ss_pred             CCCcccEEEECCcHHHHHHHHHHHhcCCCcEEEEccC
Q psy14408        430 SGDCFDIIIVGASAAGCVLANRLSEVSSLKVLLIEAG  466 (720)
Q Consensus       430 ~d~eyDVVIIGSGiAGLvAA~~LAea~G~KVLVLEKG  466 (720)
                      .+.++||||||||++|+.||+.||+. |++|+|||+.
T Consensus        18 ~~~~yDVIVIGgG~AGl~AAlaLAr~-G~kVlLIEk~   53 (641)
T 3cp8_A           18 GSHMYDVIVVGAGHAGCEAALAVARG-GLHCLLITSD   53 (641)
T ss_dssp             --CCEEEEEECCSHHHHHHHHHHHHT-TCCEEEEESC
T ss_pred             ccCcCCEEEECccHHHHHHHHHHHHC-CCcEEEEEec
Confidence            34568999999999999999999999 9999999987

>1s3e_A Amine oxidase [flavin-containing] B; human monoamine oxidase, inhibitor binding, rasagiline, enantioselectivity, oxidoreductase; HET: FAD RHP; 1.60A {Homo sapiens} SCOP: c.3.1.2 d.16.1.5 PDB: 1gos_A* 1oj9_A* 1ojb_A* 1ojc_A* 1ojd_A* 1s2q_A* 1s2y_A* 1oja_A* 1s3b_A* 2bk3_A* 2byb_A* 2c64_A* 2c65_A* 2c66_A* 2c67_A* 2c70_A* 2v5z_A* 2v60_A* 2v61_A* 2vrl_A* ...

Probab=98.70  E-value=1.7e-08  Score=112.35  Aligned_cols=39  Identities=26%  Similarity=0.403  Sum_probs=35.6

Q ss_pred             cccEEEECCcHHHHHHHHHHHhcCCCcEEEEccCCCCCCC
Q psy14408        433 CFDIIIVGASAAGCVLANRLSEVSSLKVLLIEAGGDTPIH  472 (720)
Q Consensus       433 eyDVVIIGSGiAGLvAA~~LAea~G~KVLVLEKG~~~~~s  472 (720)
                      .+||||||||++||+||++|+++ |++|+||||....++.
T Consensus         4 ~~~vvIIGaG~aGL~aA~~L~~~-G~~V~vlE~~~~~GGr   42 (520)
T 1s3e_A            4 KCDVVVVGGGISGMAAAKLLHDS-GLNVVVLEARDRVGGR   42 (520)
T ss_dssp             BCSEEEECCBHHHHHHHHHHHHT-TCCEEEECSSSSSBTT
T ss_pred             CceEEEECCCHHHHHHHHHHHHC-CCCEEEEeCCCCCCCc
Confidence            46999999999999999999999 9999999998777544

>2vvm_A Monoamine oxidase N; FAD, peroxisome, flavoprotein, oxidoreductase, enantioselectivity, directed evolution variant; HET: FAD; 1.85A {Aspergillus niger} PDB: 2vvl_A* 2vvl_G*

Probab=98.70  E-value=1e-07  Score=105.03  Aligned_cols=39  Identities=26%  Similarity=0.408  Sum_probs=35.6

Q ss_pred             cccEEEECCcHHHHHHHHHHHhcCCCcEEEEccCCCCCCC
Q psy14408        433 CFDIIIVGASAAGCVLANRLSEVSSLKVLLIEAGGDTPIH  472 (720)
Q Consensus       433 eyDVVIIGSGiAGLvAA~~LAea~G~KVLVLEKG~~~~~s  472 (720)
                      ++||||||||++||+||++|+++ |++|+||||....++.
T Consensus        39 ~~~v~iiGaG~aGl~aA~~l~~~-g~~v~v~E~~~~~GGr   77 (495)
T 2vvm_A           39 PWDVIVIGGGYCGLTATRDLTVA-GFKTLLLEARDRIGGR   77 (495)
T ss_dssp             CEEEEEECCBHHHHHHHHHHHHT-TCCEEEECSSSBSBTT
T ss_pred             CCCEEEECCcHHHHHHHHHHHHC-CCCEEEEeCCCCCCCc
Confidence            48999999999999999999999 9999999998777544

>3ab1_A Ferredoxin--NADP reductase; oxidoreductase, electron transport, FAD, flavoprotein; HET: FAD; 2.39A {Chlorobaculum tepidum}

Probab=98.70  E-value=1e-08  Score=107.99  Aligned_cols=67  Identities=18%  Similarity=0.180  Sum_probs=50.7

Q ss_pred             HHHHHhcCCCeEEEcCeEEEEEEEccCCcEEEEEEEecCCcEEEEEcCcEEEEccCCcchHHHHHHcCCC
Q psy14408        640 LTPIAGKRTNLYVLKRSKVTKVIINDQNVATGVEYVNSKGETVRVTANKEVILTAGAIANAQLLLLSGIG  709 (720)
Q Consensus       640 L~~Aa~e~aGVkIi~gt~VtkIl~e~gGrAtGV~v~dt~G~e~tIkAkK~VVVAAGa~~Sp~LLl~SGIg  709 (720)
                      |.+.. ++.|++|+.+++|++|..+ ++++.+|++...+|++.++.++ .||+|+|......+|...|+.
T Consensus       208 l~~~~-~~~gv~i~~~~~v~~i~~~-~~~v~~v~~~~~~g~~~~i~~D-~vi~a~G~~p~~~~l~~~~~~  274 (360)
T 3ab1_A          208 VERAR-ANGTIDVYLETEVASIEES-NGVLTRVHLRSSDGSKWTVEAD-RLLILIGFKSNLGPLARWDLE  274 (360)
T ss_dssp             SHHHH-HHTSEEEESSEEEEEEEEE-TTEEEEEEEEETTCCEEEEECS-EEEECCCBCCSCGGGGGSSCC
T ss_pred             HHHHh-hcCceEEEcCcCHHHhccC-CCceEEEEEEecCCCeEEEeCC-EEEECCCCCCCHHHHHhhccc
Confidence            33433 4679999999999999987 7788888887335766789998 599999965555567666654

>2aqj_A Tryptophan halogenase, pRNA; flavin-dependent halogenase, helical bundle, sandwiched sheets, structural genomics; HET: TRP FAD; 1.80A {Pseudomonas fluorescens} PDB: 2apg_A* 2ar8_A* 2ard_A* 2jkc_A*

Probab=98.69  E-value=9.3e-08  Score=107.40  Aligned_cols=35  Identities=31%  Similarity=0.447  Sum_probs=32.4

Q ss_pred             CcccEEEECCcHHHHHHHHHHHh---cCCCcEEEEccCC
Q psy14408        432 DCFDIIIVGASAAGCVLANRLSE---VSSLKVLLIEAGG  467 (720)
Q Consensus       432 ~eyDVVIIGSGiAGLvAA~~LAe---a~G~KVLVLEKG~  467 (720)
                      ..+||||||||++|+++|+.|++   + |++|+||||..
T Consensus         4 ~~~dVvIVGgG~aGl~aA~~La~~~~~-G~~V~liE~~~   41 (538)
T 2aqj_A            4 PIKNIVIVGGGTAGWMAASYLVRALQQ-QANITLIESAA   41 (538)
T ss_dssp             BCCEEEEECCSHHHHHHHHHHHHHCCS-SCEEEEEECSS
T ss_pred             CCCeEEEECCCHHHHHHHHHHHhhcCC-CCEEEEECCCC
Confidence            35799999999999999999999   8 99999999964

>3urh_A Dihydrolipoyl dehydrogenase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium; HET: FAD; 1.90A {Sinorhizobium meliloti}

Probab=98.69  E-value=1.7e-07  Score=104.03  Aligned_cols=68  Identities=21%  Similarity=0.261  Sum_probs=47.5

Q ss_pred             HHHHHHHhcCCCeEEEcCeEEEEEEEccCCcEEEEEEEecC-CcEEEEEcCcEEEEccCCcchHHH--HHHcCCC
Q psy14408        638 AYLTPIAGKRTNLYVLKRSKVTKVIINDQNVATGVEYVNSK-GETVRVTANKEVILTAGAIANAQL--LLLSGIG  709 (720)
Q Consensus       638 a~L~~Aa~e~aGVkIi~gt~VtkIl~e~gGrAtGV~v~dt~-G~e~tIkAkK~VVVAAGa~~Sp~L--Ll~SGIg  709 (720)
                      ..+.+.+ ++.|++|+++++|++|..+ ++.+ .|.+.+.. |+..++.++ .||+|+|......+  |...|+.
T Consensus       243 ~~l~~~l-~~~gV~v~~~~~v~~i~~~-~~~~-~v~~~~~~~g~~~~i~~D-~Vi~a~G~~p~~~~l~l~~~g~~  313 (491)
T 3urh_A          243 KQLQRML-TKQGIDFKLGAKVTGAVKS-GDGA-KVTFEPVKGGEATTLDAE-VVLIATGRKPSTDGLGLAKAGVV  313 (491)
T ss_dssp             HHHHHHH-HHTTCEEECSEEEEEEEEE-TTEE-EEEEEETTSCCCEEEEES-EEEECCCCEECCTTSCHHHHTCC
T ss_pred             HHHHHHH-HhCCCEEEECCeEEEEEEe-CCEE-EEEEEecCCCceEEEEcC-EEEEeeCCccCCCccCchhcCce
Confidence            3444555 5789999999999999876 4443 45565432 545688998 59999997655554  5666664

>3lad_A Dihydrolipoamide dehydrogenase; oxidoreductase; HET: FAD; 2.20A {Azotobacter vinelandii} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1lpf_A*

Probab=98.67  E-value=4.6e-07  Score=99.85  Aligned_cols=37  Identities=35%  Similarity=0.533  Sum_probs=34.1

Q ss_pred             CcccEEEECCcHHHHHHHHHHHhcCCCcEEEEccCCCC
Q psy14408        432 DCFDIIIVGASAAGCVLANRLSEVSSLKVLLIEAGGDT  469 (720)
Q Consensus       432 ~eyDVVIIGSGiAGLvAA~~LAea~G~KVLVLEKG~~~  469 (720)
                      .+|||||||||.+|++||++|+++ |++|+||||+...
T Consensus         2 ~~~DVvVIGgG~aGl~aA~~la~~-G~~V~liEk~~~~   38 (476)
T 3lad_A            2 QKFDVIVIGAGPGGYVAAIKSAQL-GLKTALIEKYKGK   38 (476)
T ss_dssp             CCCSEEEECCSHHHHHHHHHHHHH-TCCEEEEECCBCT
T ss_pred             CcCCEEEECcCHHHHHHHHHHHhC-CCEEEEEeCCCcc
Confidence            468999999999999999999999 9999999998644

>2vou_A 2,6-dihydroxypyridine hydroxylase; oxidoreductase, aromatic hydroxylase, nicotine degradation, mono-oxygenase; HET: FAD; 2.6A {Arthrobacter nicotinovorans} SCOP: c.3.1.2 d.16.1.2

Probab=98.67  E-value=1.3e-07  Score=101.46  Aligned_cols=35  Identities=26%  Similarity=0.261  Sum_probs=32.8

Q ss_pred             CcccEEEECCcHHHHHHHHHHHhcCCCcEEEEccCC
Q psy14408        432 DCFDIIIVGASAAGCVLANRLSEVSSLKVLLIEAGG  467 (720)
Q Consensus       432 ~eyDVVIIGSGiAGLvAA~~LAea~G~KVLVLEKG~  467 (720)
                      ..+||||||||++||++|+.|+++ |++|+||||..
T Consensus         4 ~~~~V~IVGaG~aGl~~A~~L~~~-G~~v~v~E~~~   38 (397)
T 2vou_A            4 TTDRIAVVGGSISGLTAALMLRDA-GVDVDVYERSP   38 (397)
T ss_dssp             CCSEEEEECCSHHHHHHHHHHHHT-TCEEEEECSSS
T ss_pred             CCCcEEEECCCHHHHHHHHHHHhC-CCCEEEEecCC
Confidence            457999999999999999999999 99999999984

>3alj_A 2-methyl-3-hydroxypyridine-5-carboxylic acid OXYG; alpha/beta fold, oxidoreductase; HET: FAD; 1.48A {Mesorhizobium loti} PDB: 3alh_A* 3ali_A* 3gmb_A* 3gmc_A* 3alk_A* 3alm_A* 3all_A*

Probab=98.67  E-value=6.8e-08  Score=102.96  Aligned_cols=36  Identities=22%  Similarity=0.189  Sum_probs=32.8

Q ss_pred             CcccEEEECCcHHHHHHHHHHHhcCCCcEEEEccCCC
Q psy14408        432 DCFDIIIVGASAAGCVLANRLSEVSSLKVLLIEAGGD  468 (720)
Q Consensus       432 ~eyDVVIIGSGiAGLvAA~~LAea~G~KVLVLEKG~~  468 (720)
                      ..+||||||||++|+++|+.|+++ |++|+||||...
T Consensus        10 ~~~dVvIVGaG~aGl~~A~~L~~~-G~~v~viE~~~~   45 (379)
T 3alj_A           10 KTRRAEVAGGGFAGLTAAIALKQN-GWDVRLHEKSSE   45 (379)
T ss_dssp             -CCEEEEECCSHHHHHHHHHHHHT-TCEEEEECSSSS
T ss_pred             CCCeEEEECCCHHHHHHHHHHHHC-CCCEEEEecCCC
Confidence            357999999999999999999999 999999999843

>4dna_A Probable glutathione reductase; structural genomics, protein structure initiative, NEW YORK structural genomix research consortium; HET: FAD; 2.80A {Sinorhizobium meliloti}

Probab=98.67  E-value=1.2e-07  Score=104.33  Aligned_cols=34  Identities=18%  Similarity=0.277  Sum_probs=32.1

Q ss_pred             CcccEEEECCcHHHHHHHHHHHhcCCCcEEEEccC
Q psy14408        432 DCFDIIIVGASAAGCVLANRLSEVSSLKVLLIEAG  466 (720)
Q Consensus       432 ~eyDVVIIGSGiAGLvAA~~LAea~G~KVLVLEKG  466 (720)
                      .++||||||||++|++||++|+++ |++|+||||+
T Consensus         4 ~~~DVvVIGaG~aGl~aA~~la~~-G~~V~liEk~   37 (463)
T 4dna_A            4 FDYDLFVIGGGSGGVRSGRLAAAL-GKKVAIAEEF   37 (463)
T ss_dssp             CSEEEEEECCSHHHHHHHHHHHTT-TCCEEEEESS
T ss_pred             CCCcEEEECcCHHHHHHHHHHHhC-CCEEEEEeCC
Confidence            358999999999999999999999 9999999994

>1trb_A Thioredoxin reductase; oxidoreductase(flavoenzyme); HET: FAD; 2.00A {Escherichia coli} SCOP: c.3.1.5 c.3.1.5 PDB: 1cl0_A* 1f6m_A* 1tdf_A* 1tde_A*

Probab=98.66  E-value=8.1e-08  Score=98.77  Aligned_cols=60  Identities=13%  Similarity=0.217  Sum_probs=45.9

Q ss_pred             cCCCeEEEcCeEEEEEEEccCCcEEEEEEEec-C-CcEEEEEcCcEEEEccCCcchHHHHHHcCC
Q psy14408        646 KRTNLYVLKRSKVTKVIINDQNVATGVEYVNS-K-GETVRVTANKEVILTAGAIANAQLLLLSGI  708 (720)
Q Consensus       646 e~aGVkIi~gt~VtkIl~e~gGrAtGV~v~dt-~-G~e~tIkAkK~VVVAAGa~~Sp~LLl~SGI  708 (720)
                      ++.|++|+++++|++|..+ ++++.+|++.+. + |+..++.++ .||+|+|......+|. .|+
T Consensus       195 ~~~gv~i~~~~~v~~i~~~-~~~v~~v~~~~~~~~g~~~~i~~D-~vv~a~G~~p~~~~~~-~~l  256 (320)
T 1trb_A          195 ENGNIILHTNRTLEEVTGD-QMGVTGVRLRDTQNSDNIESLDVA-GLFVAIGHSPNTAIFE-GQL  256 (320)
T ss_dssp             HTSSEEEECSCEEEEEEEC-SSSEEEEEEECCTTCCCCEEEECS-EEEECSCEEESCGGGT-TTS
T ss_pred             ccCCeEEEcCceeEEEEcC-CCceEEEEEEeccCCCceEEEEcC-EEEEEeCCCCChHHhc-ccc
Confidence            4789999999999999877 668889998763 2 545689998 5999999765555443 444

>1q1r_A Putidaredoxin reductase; glutathione reductase fold, oxidoreductase; HET: FAD; 1.91A {Pseudomonas putida} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1q1w_A* 3lb8_A*

Probab=98.65  E-value=1.3e-07  Score=103.50  Aligned_cols=64  Identities=22%  Similarity=0.340  Sum_probs=49.3

Q ss_pred             HHHHHHhcCCCeEEEcCeEEEEEEE--ccCCcEEEEEEEecCCcEEEEEcCcEEEEccCCcchHHHHHHcCCC
Q psy14408        639 YLTPIAGKRTNLYVLKRSKVTKVII--NDQNVATGVEYVNSKGETVRVTANKEVILTAGAIANAQLLLLSGIG  709 (720)
Q Consensus       639 ~L~~Aa~e~aGVkIi~gt~VtkIl~--e~gGrAtGV~v~dt~G~e~tIkAkK~VVVAAGa~~Sp~LLl~SGIg  709 (720)
                      ++.+.+ ++.|++|++++.|++|..  + ++++.+|++.+  |+  ++.++ .||+|+|......+|..+|+.
T Consensus       196 ~l~~~l-~~~GV~i~~~~~v~~i~~~~~-~~~v~~v~~~~--G~--~i~~D-~Vv~a~G~~p~~~l~~~~gl~  261 (431)
T 1q1r_A          196 FYEHLH-REAGVDIRTGTQVCGFEMSTD-QQKVTAVLCED--GT--RLPAD-LVIAGIGLIPNCELASAAGLQ  261 (431)
T ss_dssp             HHHHHH-HHHTCEEECSCCEEEEEECTT-TCCEEEEEETT--SC--EEECS-EEEECCCEEECCHHHHHTTCC
T ss_pred             HHHHHH-HhCCeEEEeCCEEEEEEeccC-CCcEEEEEeCC--CC--EEEcC-EEEECCCCCcCcchhhccCCC
Confidence            444444 477999999999999987  5 67777777644  63  68898 599999976666788888875

>2r0c_A REBC; flavin adenine dinucleotide, monooxygenase, oxidoreductase; HET: FAD; 1.80A {Lechevalieria aerocolonigenes} PDB: 2r0g_A* 2r0p_A* 3ept_A*

Probab=98.65  E-value=3.7e-07  Score=103.18  Aligned_cols=36  Identities=25%  Similarity=0.353  Sum_probs=33.4

Q ss_pred             CcccEEEECCcHHHHHHHHHHHhcCCCcEEEEccCCC
Q psy14408        432 DCFDIIIVGASAAGCVLANRLSEVSSLKVLLIEAGGD  468 (720)
Q Consensus       432 ~eyDVVIIGSGiAGLvAA~~LAea~G~KVLVLEKG~~  468 (720)
                      .++||||||||++||++|+.|+++ |++|+||||...
T Consensus        25 ~~~dVlIVGaGpaGl~~A~~La~~-G~~V~vlEr~~~   60 (549)
T 2r0c_A           25 IETDVLILGGGPVGMALALDLAHR-QVGHLVVEQTDG   60 (549)
T ss_dssp             EEEEEEEECCSHHHHHHHHHHHHT-TCCEEEECSSCS
T ss_pred             CCCCEEEECcCHHHHHHHHHHHHC-CCCEEEEeCCCC
Confidence            468999999999999999999999 999999999843

>2e4g_A Tryptophan halogenase; flavin-binding, rebeccamycin biosynthesis, biosynthetic protein, flavoprotein; HET: TRP; 2.08A {Lechevalieria aerocolonigenes} PDB: 2o9z_A 2oa1_A* 2oal_A* 2oam_A

Probab=98.64  E-value=1.5e-07  Score=106.33  Aligned_cols=54  Identities=15%  Similarity=0.200  Sum_probs=40.1

Q ss_pred             HHHHHHHHHhcCC-CeEEEcCeEEEEEEEccCCcEEEEEEEecCCcEEEEEcCcEEEEccCC
Q psy14408        636 ADAYLTPIAGKRT-NLYVLKRSKVTKVIINDQNVATGVEYVNSKGETVRVTANKEVILTAGA  696 (720)
Q Consensus       636 a~a~L~~Aa~e~a-GVkIi~gt~VtkIl~e~gGrAtGV~v~dt~G~e~tIkAkK~VVVAAGa  696 (720)
                      ...+|.+.+ ++. |++|+.+ +|++|..++++++.+|++.+  |+  +++|+ .||+|+|.
T Consensus       196 l~~~L~~~~-~~~~Gv~i~~~-~V~~i~~~~~g~~~~v~~~~--G~--~i~ad-~vI~A~G~  250 (550)
T 2e4g_A          196 VADFLRRFA-TEKLGVRHVED-RVEHVQRDANGNIESVRTAT--GR--VFDAD-LFVDCSGF  250 (550)
T ss_dssp             HHHHHHHHH-HHHSCCEEEEC-CEEEEEECTTSCEEEEEETT--SC--EEECS-EEEECCGG
T ss_pred             HHHHHHHHH-HhcCCcEEEEC-eEeEEEEcCCCCEEEEEECC--CC--EEECC-EEEECCCC
Confidence            445565555 456 9999999 99999886356777777644  53  68997 59999996

>2dkh_A 3-hydroxybenzoate hydroxylase; flavoprotein, monooxygenase, complex, oxidoreductase; HET: FAD 3HB; 1.80A {Comamonas testosteroni} PDB: 2dki_A*

Probab=98.64  E-value=1.2e-07  Score=109.13  Aligned_cols=35  Identities=29%  Similarity=0.518  Sum_probs=33.0

Q ss_pred             CcccEEEECCcHHHHHHHHHHHh-cCCCcEEEEccCC
Q psy14408        432 DCFDIIIVGASAAGCVLANRLSE-VSSLKVLLIEAGG  467 (720)
Q Consensus       432 ~eyDVVIIGSGiAGLvAA~~LAe-a~G~KVLVLEKG~  467 (720)
                      .++||||||||++||++|+.|++ . |++|+||||..
T Consensus        31 ~~~dVlIVGaGpaGL~~A~~La~~~-G~~V~viEr~~   66 (639)
T 2dkh_A           31 SQVDVLIVGCGPAGLTLAAQLAAFP-DIRTCIVEQKE   66 (639)
T ss_dssp             SEEEEEEECCSHHHHHHHHHHTTCT-TSCEEEECSSS
T ss_pred             CCCcEEEECcCHHHHHHHHHHHHhC-CCCEEEEeCCC
Confidence            46899999999999999999999 9 99999999984

>3dgh_A TRXR-1, thioredoxin reductase 1, mitochondrial; oxidoreductase, rossmann, flavoprotein, alternative initiati mitochondrion, NADP; HET: FAD; 1.75A {Drosophila melanogaster} PDB: 2nvk_X* 3dh9_A*

Probab=98.63  E-value=5.5e-08  Score=107.71  Aligned_cols=69  Identities=17%  Similarity=0.186  Sum_probs=47.8

Q ss_pred             HHHHHHHhcCCCeEEEcCeEEEEEEEccCCcEEEEEEEec-CCcEEEEEcCcEEEEccCCcchHHHH--HHcCCC
Q psy14408        638 AYLTPIAGKRTNLYVLKRSKVTKVIINDQNVATGVEYVNS-KGETVRVTANKEVILTAGAIANAQLL--LLSGIG  709 (720)
Q Consensus       638 a~L~~Aa~e~aGVkIi~gt~VtkIl~e~gGrAtGV~v~dt-~G~e~tIkAkK~VVVAAGa~~Sp~LL--l~SGIg  709 (720)
                      ..+.+.+ ++.|++|++++.|++|..++++++ .|++.+. .|+..++.++ .||+|+|......+|  ...|+.
T Consensus       231 ~~l~~~l-~~~Gv~i~~~~~v~~i~~~~~~~~-~v~~~~~~~~~~~~~~~D-~vi~a~G~~p~~~~l~l~~~gl~  302 (483)
T 3dgh_A          231 ELVAASM-EERGIPFLRKTVPLSVEKQDDGKL-LVKYKNVETGEESEDVYD-TVLWAIGRKGLVDDLNLPNAGVT  302 (483)
T ss_dssp             HHHHHHH-HHTTCCEEETEEEEEEEECTTSCE-EEEEEETTTCCEEEEEES-EEEECSCEEECCGGGTGGGTTCC
T ss_pred             HHHHHHH-HhCCCEEEeCCEEEEEEEcCCCcE-EEEEecCCCCceeEEEcC-EEEECcccccCcCcCCchhcCcc
Confidence            3455555 578999999999999987523443 4666663 3556689998 599999976555554  455554

>3c96_A Flavin-containing monooxygenase; FAD, oxidoreductase, PF01266, NESG, PAR240, structural genomics, PSI-2; HET: FAD; 1.90A {Pseudomonas aeruginosa PAO1} SCOP: c.3.1.2 d.16.1.2 PDB: 2rgj_A*

Probab=98.62  E-value=2.8e-07  Score=99.34  Aligned_cols=36  Identities=31%  Similarity=0.478  Sum_probs=32.8

Q ss_pred             CcccEEEECCcHHHHHHHHHHHhcCCCc-EEEEccCCC
Q psy14408        432 DCFDIIIVGASAAGCVLANRLSEVSSLK-VLLIEAGGD  468 (720)
Q Consensus       432 ~eyDVVIIGSGiAGLvAA~~LAea~G~K-VLVLEKG~~  468 (720)
                      .++||||||||++||++|+.|+++ |++ |+||||...
T Consensus         3 ~~~dVvIVGaG~aGl~~A~~L~~~-G~~~v~v~E~~~~   39 (410)
T 3c96_A            3 EPIDILIAGAGIGGLSCALALHQA-GIGKVTLLESSSE   39 (410)
T ss_dssp             -CCEEEEECCSHHHHHHHHHHHHT-TCSEEEEEESSSS
T ss_pred             CCCeEEEECCCHHHHHHHHHHHhC-CCCeEEEEECCCC
Confidence            357999999999999999999999 999 999999843

>3s5w_A L-ornithine 5-monooxygenase; class B flavin dependent N-hydroxylating monooxygenase, CLAS flavin dependent monooxygenase N-hydroxylating; HET: FAD ONH NAP; 1.90A {Pseudomonas aeruginosa} PDB: 3s61_A*

Probab=98.62  E-value=4.9e-07  Score=98.74  Aligned_cols=37  Identities=35%  Similarity=0.460  Sum_probs=33.9

Q ss_pred             CcccEEEECCcHHHHHHHHHHHhcCC-----CcEEEEccCCCC
Q psy14408        432 DCFDIIIVGASAAGCVLANRLSEVSS-----LKVLLIEAGGDT  469 (720)
Q Consensus       432 ~eyDVVIIGSGiAGLvAA~~LAea~G-----~KVLVLEKG~~~  469 (720)
                      ..+||||||||++|+++|..|+++ |     ++|+||||....
T Consensus        29 ~~~dVvIIGaG~aGl~aA~~L~~~-g~~~~~~~v~liE~~~~~   70 (463)
T 3s5w_A           29 VVHDLIGVGFGPSNIALAIALQER-AQAQGALEVLFLDKQGDY   70 (463)
T ss_dssp             CEESEEEECCSHHHHHHHHHHHHH-HHHHCCCCEEEEESCSSC
T ss_pred             CcCCEEEECCCHHHHHHHHHHHhc-ccccCcccEEEEecCCCC
Confidence            468999999999999999999999 9     999999998644

>2pyx_A Tryptophan halogenase; structural genomics, JOI for structural genomics, JCSG, protein structure initiative biosynthetic protein; HET: MSE TLA PG4; 1.50A {Shewanella frigidimarina}

Probab=98.61  E-value=1.7e-07  Score=105.18  Aligned_cols=55  Identities=15%  Similarity=0.164  Sum_probs=39.2

Q ss_pred             HHHHHHHHHHhcC-CCeEEEcCeEEEEEEEccCCcEEEEEEEecCCcEEEEEcCcEEEEccCC
Q psy14408        635 AADAYLTPIAGKR-TNLYVLKRSKVTKVIINDQNVATGVEYVNSKGETVRVTANKEVILTAGA  696 (720)
Q Consensus       635 aa~a~L~~Aa~e~-aGVkIi~gt~VtkIl~e~gGrAtGV~v~dt~G~e~tIkAkK~VVVAAGa  696 (720)
                      ....+|.+.+ ++ .|++++.+ +|++|..++++.+++|++.+  |+  +++|+ .||.|+|.
T Consensus       176 ~l~~~L~~~a-~~~~Gv~i~~~-~v~~i~~~~~g~~~~v~~~~--g~--~i~ad-~vV~AdG~  231 (526)
T 2pyx_A          176 KFSQLLTEHC-TQKLGVTHIRD-HVSQIINNQHGDIEKLITKQ--NG--EISGQ-LFIDCTGA  231 (526)
T ss_dssp             HHHHHHHHHH-HHTSCCEEEEC-CEEEEEECTTSCEEEEEESS--SC--EEECS-EEEECSGG
T ss_pred             HHHHHHHHHH-HhcCCCEEEEe-EEEEEEecCCCcEEEEEECC--CC--EEEcC-EEEECCCc
Confidence            3445565555 35 79999999 59999886345666776543  54  48997 59999886

>4gut_A Lysine-specific histone demethylase 1B; histone demethylase; HET: FAD PGE; 2.00A {Homo sapiens} PDB: 4gur_A* 4gus_A* 4guu_A* 4fwe_A* 4fwf_A* 4fwj_A* 4gu1_A*

Probab=98.60  E-value=2.4e-07  Score=109.46  Aligned_cols=40  Identities=30%  Similarity=0.353  Sum_probs=36.0

Q ss_pred             CCcccEEEECCcHHHHHHHHHHHhcCCCcEEEEccCCCCCC
Q psy14408        431 GDCFDIIIVGASAAGCVLANRLSEVSSLKVLLIEAGGDTPI  471 (720)
Q Consensus       431 d~eyDVVIIGSGiAGLvAA~~LAea~G~KVLVLEKG~~~~~  471 (720)
                      ...+||||||||++|++||+.|+++ |++|+||||+...++
T Consensus       334 ~~~~~v~viG~G~~Gl~aA~~l~~~-g~~v~v~E~~~~~gg  373 (776)
T 4gut_A          334 YHNKSVIIIGAGPAGLAAARQLHNF-GIKVTVLEAKDRIGG  373 (776)
T ss_dssp             GTSCEEEEECCSHHHHHHHHHHHHH-TCEEEEECSSSSSCT
T ss_pred             CCCCeEEEECCCHHHHHHHHHHHHC-CCcEEEEecccceec
Confidence            3468999999999999999999999 999999999876654

>3iwa_A FAD-dependent pyridine nucleotide-disulphide oxidoreductase; structural genomics, PSI-2, protein structur initiative; 2.30A {Desulfovibrio vulgaris}

Probab=98.60  E-value=2.7e-07  Score=101.70  Aligned_cols=64  Identities=22%  Similarity=0.229  Sum_probs=48.2

Q ss_pred             HHHHHHHhcCCCeEEEcCeEEEEEEEccCCcEEEEEEEecCCcEEEEEcCcEEEEccCCcchHHHHHHcCCC
Q psy14408        638 AYLTPIAGKRTNLYVLKRSKVTKVIINDQNVATGVEYVNSKGETVRVTANKEVILTAGAIANAQLLLLSGIG  709 (720)
Q Consensus       638 a~L~~Aa~e~aGVkIi~gt~VtkIl~e~gGrAtGV~v~dt~G~e~tIkAkK~VVVAAGa~~Sp~LLl~SGIg  709 (720)
                      ..+.+.+ ++.|++|+++++|++|..+ ++++. |++.+  |+  ++.++ .||+|+|......++...|+.
T Consensus       206 ~~l~~~l-~~~GV~i~~~~~v~~i~~~-~~~v~-v~~~~--g~--~i~aD-~Vv~a~G~~p~~~l~~~~gl~  269 (472)
T 3iwa_A          206 QMLRHDL-EKNDVVVHTGEKVVRLEGE-NGKVA-RVITD--KR--TLDAD-LVILAAGVSPNTQLARDAGLE  269 (472)
T ss_dssp             HHHHHHH-HHTTCEEECSCCEEEEEES-SSBEE-EEEES--SC--EEECS-EEEECSCEEECCHHHHHHTCC
T ss_pred             HHHHHHH-HhcCCEEEeCCEEEEEEcc-CCeEE-EEEeC--CC--EEEcC-EEEECCCCCcCHHHHHhCCcc
Confidence            3455555 5789999999999999886 56655 55544  64  78898 599999987666677777875

>3k30_A Histamine dehydrogenase; 6-S-cysteinyl-FMN, ADP binding site, oxidoreductase; HET: FMN ADP; 2.70A {Pimelobacter simplex}

Probab=98.58  E-value=2.1e-07  Score=108.03  Aligned_cols=38  Identities=32%  Similarity=0.405  Sum_probs=34.7

Q ss_pred             CCcccEEEECCcHHHHHHHHHHHhcCCCcEEEEccCCCC
Q psy14408        431 GDCFDIIIVGASAAGCVLANRLSEVSSLKVLLIEAGGDT  469 (720)
Q Consensus       431 d~eyDVVIIGSGiAGLvAA~~LAea~G~KVLVLEKG~~~  469 (720)
                      ...+||||||||++|++||++|+++ |++|+||||+...
T Consensus       389 ~~~~~VvIIGgG~AGl~aA~~La~~-G~~V~liE~~~~~  426 (690)
T 3k30_A          389 ESDARVLVVGAGPSGLEAARALGVR-GYDVVLAEAGRDL  426 (690)
T ss_dssp             SSCCEEEEECCSHHHHHHHHHHHHH-TCEEEEECSSSSS
T ss_pred             cccceEEEECCCHHHHHHHHHHHHC-CCeEEEEecCCCC
Confidence            4567999999999999999999999 9999999998654

>3dgz_A Thioredoxin reductase 2; oxidoreductase, rossmann, flavoprotein, FAD, mitochondrion, redox-active center, selenium, selenocysteine, transit PEPT; HET: FAD NA7; 2.25A {Mus musculus} PDB: 1zkq_A* 1zdl_A*

Probab=98.56  E-value=9.4e-08  Score=106.08  Aligned_cols=69  Identities=17%  Similarity=0.188  Sum_probs=47.0

Q ss_pred             HHHHHHHhcCCCeEEEcCeEEEEEEEccCCcEEEEEEEecC-CcEEEEEcCcEEEEccCCcchHHH--HHHcCCC
Q psy14408        638 AYLTPIAGKRTNLYVLKRSKVTKVIINDQNVATGVEYVNSK-GETVRVTANKEVILTAGAIANAQL--LLLSGIG  709 (720)
Q Consensus       638 a~L~~Aa~e~aGVkIi~gt~VtkIl~e~gGrAtGV~v~dt~-G~e~tIkAkK~VVVAAGa~~Sp~L--Ll~SGIg  709 (720)
                      ..+...+ ++.|++|++++.|++|...+++. ..|++.+.+ |++.++.++ .||+|+|......+  |...|+.
T Consensus       229 ~~l~~~l-~~~gv~~~~~~~v~~i~~~~~~~-~~v~~~~~~~g~~~~~~~D-~vi~a~G~~p~~~~l~l~~~g~~  300 (488)
T 3dgz_A          229 SLVTEHM-ESHGTQFLKGCVPSHIKKLPTNQ-LQVTWEDHASGKEDTGTFD-TVLWAIGRVPETRTLNLEKAGIS  300 (488)
T ss_dssp             HHHHHHH-HHTTCEEEETEEEEEEEECTTSC-EEEEEEETTTTEEEEEEES-EEEECSCEEESCGGGTGGGGTCC
T ss_pred             HHHHHHH-HHCCCEEEeCCEEEEEEEcCCCc-EEEEEEeCCCCeeEEEECC-EEEEcccCCcccCcCCccccCcE
Confidence            4455555 57899999999999998742343 346665543 555678998 59999997665555  4455553

>3lzw_A Ferredoxin--NADP reductase 2; ferredoxin reductase, FAD, NADPH, flavoprotein, oxidor; HET: FAD NAP; 1.80A {Bacillus subtilis} PDB: 3lzx_A*

Probab=98.55  E-value=2.2e-07  Score=95.44  Aligned_cols=34  Identities=26%  Similarity=0.271  Sum_probs=32.2

Q ss_pred             cccEEEECCcHHHHHHHHHHHhcCCCcEEEEccCC
Q psy14408        433 CFDIIIVGASAAGCVLANRLSEVSSLKVLLIEAGG  467 (720)
Q Consensus       433 eyDVVIIGSGiAGLvAA~~LAea~G~KVLVLEKG~  467 (720)
                      .+||||||||++|++||+.|+++ |++|+||||..
T Consensus         7 ~~~vvIIG~G~aGl~aA~~l~~~-g~~v~lie~~~   40 (332)
T 3lzw_A            7 VYDITIIGGGPVGLFTAFYGGMR-QASVKIIESLP   40 (332)
T ss_dssp             EEEEEEECCSHHHHHHHHHHHHT-TCCEEEECSSS
T ss_pred             cceEEEECCCHHHHHHHHHHHHC-CCCEEEEEcCC
Confidence            47999999999999999999999 99999999984

>3hyw_A Sulfide-quinone reductase; monotopic membrane protein, flavoprotein, polysulfur, oxidoreductase; HET: FAD DCQ LMT; 2.00A {Aquifex aeolicus} PDB: 3hyv_A* 3hyx_A*

Probab=98.55  E-value=5.6e-07  Score=98.37  Aligned_cols=63  Identities=14%  Similarity=0.160  Sum_probs=45.6

Q ss_pred             HHHHHHHhcCCCeEEEcCeEEEEEEEccCCcEEEEEEEecCCcEEEEEcCcEEEEccCCcchHHHHHHcCCC
Q psy14408        638 AYLTPIAGKRTNLYVLKRSKVTKVIINDQNVATGVEYVNSKGETVRVTANKEVILTAGAIANAQLLLLSGIG  709 (720)
Q Consensus       638 a~L~~Aa~e~aGVkIi~gt~VtkIl~e~gGrAtGV~v~dt~G~e~tIkAkK~VVVAAGa~~Sp~LLl~SGIg  709 (720)
                      .++.+.. ++.|+++++++.|++|.-+      ++.+.+.+|...+|.++ .||+++|.-. +.++..+|..
T Consensus       204 ~~l~~~l-~~~GV~~~~~~~v~~v~~~------~~~~~~~~g~~~~i~~d-~vi~~~G~~~-~~~~~~~~~~  266 (430)
T 3hyw_A          204 RLVEDLF-AERNIDWIANVAVKAIEPD------KVIYEDLNGNTHEVPAK-FTMFMPSFQG-PEVVASAGDK  266 (430)
T ss_dssp             HHHHHHH-HHTTCEEECSCEEEEECSS------EEEEECTTSCEEEEECS-EEEEECEEEC-CHHHHTTCTT
T ss_pred             HHHHHHH-HhCCeEEEeCceEEEEeCC------ceEEEeeCCCceEeecc-eEEEeccCCC-chHHHhcccc
Confidence            4555555 5789999999999998532      35566656777789998 5899988644 4677777643

>3h8l_A NADH oxidase; membrane protein, complete form, rossman-like fold, oxidoreductase; HET: FAD; 2.57A {Acidianus ambivalens} PDB: 3h8i_A*

Probab=98.54  E-value=2.8e-07  Score=99.28  Aligned_cols=34  Identities=15%  Similarity=0.217  Sum_probs=31.8

Q ss_pred             cEEEECCcHHHHHHHHHHHh---cCCCcEEEEccCCCC
Q psy14408        435 DIIIVGASAAGCVLANRLSE---VSSLKVLLIEAGGDT  469 (720)
Q Consensus       435 DVVIIGSGiAGLvAA~~LAe---a~G~KVLVLEKG~~~  469 (720)
                      ||||||||++|+++|.+|++   . |++|+|||++...
T Consensus         3 ~VvIIGgG~aGl~aA~~L~~~~~~-g~~V~vie~~~~~   39 (409)
T 3h8l_A            3 KVLVLGGRFGALTAAYTLKRLVGS-KADVKVINKSRFS   39 (409)
T ss_dssp             EEEEECSSHHHHHHHHHHHHHHGG-GSEEEEEESSSEE
T ss_pred             eEEEECCCHHHHHHHHHHHhhCCC-CCeEEEEeCCCCc
Confidence            89999999999999999999   8 9999999998654

>3ef6_A Toluene 1,2-dioxygenase system ferredoxin--NAD(+) reductase; FAD binding protein, NADH binding protein, aromatic hydrocar catabolism, FAD; HET: FAD; 1.80A {Pseudomonas putida} PDB: 4emi_A* 4emj_A*

Probab=98.52  E-value=3.2e-07  Score=99.53  Aligned_cols=65  Identities=18%  Similarity=0.179  Sum_probs=49.7

Q ss_pred             HHHHHHHhcCCCeEEEcCeEEEEEEEccCCcEEEEEEEecCCcEEEEEcCcEEEEccCCcchHHHHHHcCCCC
Q psy14408        638 AYLTPIAGKRTNLYVLKRSKVTKVIINDQNVATGVEYVNSKGETVRVTANKEVILTAGAIANAQLLLLSGIGP  710 (720)
Q Consensus       638 a~L~~Aa~e~aGVkIi~gt~VtkIl~e~gGrAtGV~v~dt~G~e~tIkAkK~VVVAAGa~~Sp~LLl~SGIgp  710 (720)
                      .++.+.+ ++.|++|++++.|++|..+  +++.+|++.+  |+  ++.|+ .||+|+|......+|..+|+.-
T Consensus       189 ~~l~~~l-~~~GV~i~~~~~v~~i~~~--~~~~~v~~~d--g~--~i~aD-~Vv~a~G~~p~~~l~~~~gl~~  253 (410)
T 3ef6_A          189 AWLRGLL-TELGVQVELGTGVVGFSGE--GQLEQVMASD--GR--SFVAD-SALICVGAEPADQLARQAGLAC  253 (410)
T ss_dssp             HHHHHHH-HHHTCEEECSCCEEEEECS--SSCCEEEETT--SC--EEECS-EEEECSCEEECCHHHHHTTCCB
T ss_pred             HHHHHHH-HHCCCEEEeCCEEEEEecc--CcEEEEEECC--CC--EEEcC-EEEEeeCCeecHHHHHhCCCcc
Confidence            3455555 5789999999999999754  3566777654  64  68898 5999999877777888888753

>4hb9_A Similarities with probable monooxygenase; flavin, structural genomics, NEW YORK structural genomics RE consortium, nysgrc, PSI; HET: MSE FAD; 1.93A {Photorhabdus luminescens}

Probab=98.51  E-value=5.1e-07  Score=95.40  Aligned_cols=33  Identities=30%  Similarity=0.456  Sum_probs=31.0

Q ss_pred             cEEEECCcHHHHHHHHHHHhcCCCcEEEEccCCC
Q psy14408        435 DIIIVGASAAGCVLANRLSEVSSLKVLLIEAGGD  468 (720)
Q Consensus       435 DVVIIGSGiAGLvAA~~LAea~G~KVLVLEKG~~  468 (720)
                      .|||||||++||++|+.|+++ |++|+||||...
T Consensus         3 ~V~IVGaGpaGl~~A~~L~~~-G~~v~v~Er~~~   35 (412)
T 4hb9_A            3 HVGIIGAGIGGTCLAHGLRKH-GIKVTIYERNSA   35 (412)
T ss_dssp             EEEEECCSHHHHHHHHHHHHT-TCEEEEECSSCS
T ss_pred             EEEEECcCHHHHHHHHHHHhC-CCCEEEEecCCC
Confidence            699999999999999999999 999999999743

>3ic9_A Dihydrolipoamide dehydrogenase; APC62701, colwellia psychrer 34H, structural genomics, PSI-2; HET: FAD; 2.15A {Colwellia psychrerythraea}

Probab=98.49  E-value=1.4e-06  Score=97.11  Aligned_cols=67  Identities=19%  Similarity=0.288  Sum_probs=46.7

Q ss_pred             HHHHHHHhcCCCeEEEcCeEEEEEEEccCCcEEEEEEEecCCcEEEEEcCcEEEEccCCcchHHH--HHHcCCC
Q psy14408        638 AYLTPIAGKRTNLYVLKRSKVTKVIINDQNVATGVEYVNSKGETVRVTANKEVILTAGAIANAQL--LLLSGIG  709 (720)
Q Consensus       638 a~L~~Aa~e~aGVkIi~gt~VtkIl~e~gGrAtGV~v~dt~G~e~tIkAkK~VVVAAGa~~Sp~L--Ll~SGIg  709 (720)
                      ..+.+.+ ++. ++|++++.|++|..+ ++++. |++.+.+|++.++.++ .||+|+|......+  |...|+.
T Consensus       219 ~~l~~~l-~~~-V~i~~~~~v~~i~~~-~~~v~-v~~~~~~G~~~~i~~D-~Vi~a~G~~p~~~~l~l~~~gl~  287 (492)
T 3ic9_A          219 RYAEKTF-NEE-FYFDAKARVISTIEK-EDAVE-VIYFDKSGQKTTESFQ-YVLAATGRKANVDKLGLENTSIE  287 (492)
T ss_dssp             HHHHHHH-HTT-SEEETTCEEEEEEEC-SSSEE-EEEECTTCCEEEEEES-EEEECSCCEESCSSSCGGGSCCC
T ss_pred             HHHHHHH-hhC-cEEEECCEEEEEEEc-CCEEE-EEEEeCCCceEEEECC-EEEEeeCCccCCCCCChhhcCCE
Confidence            3455555 355 999999999999887 55544 5554335766689998 59999998666555  5555654

>1m6i_A Programmed cell death protein 8; apoptosis, AIF, oxidoreductase; HET: FAD; 1.80A {Homo sapiens} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 3gd3_A* 3gd4_A* 1gv4_A*

Probab=98.48  E-value=2.1e-06  Score=95.72  Aligned_cols=64  Identities=16%  Similarity=0.280  Sum_probs=47.3

Q ss_pred             HHHHHHHhcCCCeEEEcCeEEEEEEEccCCcEEEEEEEecCCcEEEEEcCcEEEEccCCcchHHHHHHcCCC
Q psy14408        638 AYLTPIAGKRTNLYVLKRSKVTKVIINDQNVATGVEYVNSKGETVRVTANKEVILTAGAIANAQLLLLSGIG  709 (720)
Q Consensus       638 a~L~~Aa~e~aGVkIi~gt~VtkIl~e~gGrAtGV~v~dt~G~e~tIkAkK~VVVAAGa~~Sp~LLl~SGIg  709 (720)
                      .++.+.+ ++.|++|++++.|++|..+ ++++ +|++.  +|+  ++.|+ .||+|+|......++..+|+.
T Consensus       230 ~~~~~~l-~~~GV~v~~~~~V~~i~~~-~~~~-~v~l~--dG~--~i~aD-~Vv~a~G~~pn~~l~~~~gl~  293 (493)
T 1m6i_A          230 NWTMEKV-RREGVKVMPNAIVQSVGVS-SGKL-LIKLK--DGR--KVETD-HIVAAVGLEPNVELAKTGGLE  293 (493)
T ss_dssp             HHHHHHH-HTTTCEEECSCCEEEEEEE-TTEE-EEEET--TSC--EEEES-EEEECCCEEECCTTHHHHTCC
T ss_pred             HHHHHHH-HhcCCEEEeCCEEEEEEec-CCeE-EEEEC--CCC--EEECC-EEEECCCCCccHHHHHHcCCc
Confidence            3455555 5889999999999999876 4443 45543  364  68898 599999987666788888875

>2gv8_A Monooxygenase; FMO, FAD, NADPH, cofactor complex, PSI, structura genomics, protein structure initiative; HET: FAD NDP; 2.10A {Schizosaccharomyces pombe} SCOP: c.3.1.5 c.3.1.5 PDB: 2gvc_A* 1vqw_A*

Probab=98.47  E-value=9.8e-07  Score=96.58  Aligned_cols=37  Identities=32%  Similarity=0.396  Sum_probs=33.7

Q ss_pred             CcccEEEECCcHHHHHHHHHHHhcCCC--cEEEEccCCCC
Q psy14408        432 DCFDIIIVGASAAGCVLANRLSEVSSL--KVLLIEAGGDT  469 (720)
Q Consensus       432 ~eyDVVIIGSGiAGLvAA~~LAea~G~--KVLVLEKG~~~  469 (720)
                      ..+||||||||++|+++|+.|+++ |+  +|+|+||....
T Consensus         5 ~~~dV~IIGaG~aGl~aA~~L~~~-G~~~~V~v~E~~~~~   43 (447)
T 2gv8_A            5 TIRKIAIIGAGPSGLVTAKALLAE-KAFDQVTLFERRGSP   43 (447)
T ss_dssp             SCCEEEEECCSHHHHHHHHHHHTT-TCCSEEEEECSSSSS
T ss_pred             CCCEEEEECccHHHHHHHHHHHhc-CCCCCeEEEecCCCC
Confidence            357999999999999999999999 99  99999998654

>3gwf_A Cyclohexanone monooxygenase; flavoprotein biocatalysis baeyer-villiger oxidation green CH monooxygenase, oxidoreductase; HET: FAD NAP; 2.20A {Rhodococcus SP} PDB: 3gwd_A* 3ucl_A*

Probab=98.45  E-value=3.7e-07  Score=103.43  Aligned_cols=36  Identities=19%  Similarity=0.400  Sum_probs=32.9

Q ss_pred             CcccEEEECCcHHHHHHHHHHH-hcCCCcEEEEccCCC
Q psy14408        432 DCFDIIIVGASAAGCVLANRLS-EVSSLKVLLIEAGGD  468 (720)
Q Consensus       432 ~eyDVVIIGSGiAGLvAA~~LA-ea~G~KVLVLEKG~~  468 (720)
                      .++||||||||++|+++|++|+ +. |++|+||||+..
T Consensus         7 ~~~dVvIIGaG~aGl~aA~~L~~~~-G~~v~viE~~~~   43 (540)
T 3gwf_A            7 HTVDAVVIGAGFGGIYAVHKLHHEL-GLTTVGFDKADG   43 (540)
T ss_dssp             EEEEEEEECCSHHHHHHHHHHHHTT-CCCEEEEESSSS
T ss_pred             CCCCEEEECcCHHHHHHHHHHHHcC-CCCEEEEECCCC
Confidence            4689999999999999999999 77 999999999843

>4ap3_A Steroid monooxygenase; oxidoreductase, baeyer-villiger; HET: FAD NAP; 2.39A {Rhodococcus rhodochrous} PDB: 4aox_A* 4aos_A* 4ap1_A*

Probab=98.44  E-value=6.7e-07  Score=101.51  Aligned_cols=37  Identities=30%  Similarity=0.482  Sum_probs=33.4

Q ss_pred             CCcccEEEECCcHHHHHHHHHHHhcCCCcEEEEccCCC
Q psy14408        431 GDCFDIIIVGASAAGCVLANRLSEVSSLKVLLIEAGGD  468 (720)
Q Consensus       431 d~eyDVVIIGSGiAGLvAA~~LAea~G~KVLVLEKG~~  468 (720)
                      ..++||||||||++|+++|++|++. |++|+||||+..
T Consensus        19 ~~~~dVvIIGaG~aGl~aA~~L~~~-G~~v~iiE~~~~   55 (549)
T 4ap3_A           19 TTSYDVVVVGAGIAGLYAIHRFRSQ-GLTVRAFEAASG   55 (549)
T ss_dssp             -CEEEEEEECCSHHHHHHHHHHHHT-TCCEEEECSSSS
T ss_pred             CCCCCEEEECchHHHHHHHHHHHhC-CCCEEEEeCCCC
Confidence            3568999999999999999999998 999999999853

>3l8k_A Dihydrolipoyl dehydrogenase; redox-active center, structural genomics, PSI-2, protein structure initiative; HET: ADP; 2.50A {Sulfolobus solfataricus}

Probab=98.44  E-value=4.5e-07  Score=100.04  Aligned_cols=34  Identities=32%  Similarity=0.595  Sum_probs=32.1

Q ss_pred             cccEEEECCcHHHHHHHHHHHhcCCCcEEEEccCC
Q psy14408        433 CFDIIIVGASAAGCVLANRLSEVSSLKVLLIEAGG  467 (720)
Q Consensus       433 eyDVVIIGSGiAGLvAA~~LAea~G~KVLVLEKG~  467 (720)
                      ++||||||||.+|++||++|++. |++|+||||..
T Consensus         4 ~~DVvVIGgG~aGl~aA~~l~~~-G~~V~liEk~~   37 (466)
T 3l8k_A            4 KYDVVVIGAGGAGYHGAFRLAKA-KYNVLMADPKG   37 (466)
T ss_dssp             EEEEEEECCSHHHHHHHHHHHHT-TCCEEEECTTS
T ss_pred             cceEEEECCCHHHHHHHHHHHhC-CCeEEEEECCC
Confidence            58999999999999999999999 99999999763

>4fk1_A Putative thioredoxin reductase; structural genomics, niaid, national institute of allergy AN infectious diseases; HET: MSE FAD; 2.40A {Bacillus anthracis} PDB: 4fk1_C*

Probab=98.44  E-value=1e-07  Score=98.58  Aligned_cols=57  Identities=16%  Similarity=0.186  Sum_probs=43.1

Q ss_pred             cCCCeEEEcCeEEEEEEEccCCcEEEEEEEecCCcEEEEEcCcEEEEccCCcchHHHHHHcCCC
Q psy14408        646 KRTNLYVLKRSKVTKVIINDQNVATGVEYVNSKGETVRVTANKEVILTAGAIANAQLLLLSGIG  709 (720)
Q Consensus       646 e~aGVkIi~gt~VtkIl~e~gGrAtGV~v~dt~G~e~tIkAkK~VVVAAGa~~Sp~LLl~SGIg  709 (720)
                      ++.|++++.+. |+.+..+ ++++.+|++.+  |+  ++.++ .||+++|+.....+|...|+.
T Consensus       191 ~~~g~~~~~~~-v~~~~~~-~~~~~~v~~~~--g~--~i~~~-~~vi~~g~~~~~~~~~~~g~~  247 (304)
T 4fk1_A          191 SNKNIPVITES-IRTLQGE-GGYLKKVEFHS--GL--RIERA-GGFIVPTFFRPNQFIEQLGCE  247 (304)
T ss_dssp             HTTTCCEECSC-EEEEESG-GGCCCEEEETT--SC--EECCC-EEEECCEEECSSCHHHHTTCC
T ss_pred             hccceeEeeee-EEEeecC-CCeeeeeeccc--cc--eeeec-ceeeeeccccCChhhhhcCeE
Confidence            37899999875 7777766 67788887654  64  57776 489988887777788888875

>3uox_A Otemo; baeyer-villiger monooxygenase, oxidoreductase; HET: FAD; 1.96A {Pseudomonas putida} PDB: 3uov_A* 3uoy_A* 3uoz_A* 3up4_A* 3up5_A*

Probab=98.44  E-value=3e-07  Score=104.31  Aligned_cols=37  Identities=35%  Similarity=0.548  Sum_probs=33.7

Q ss_pred             CCcccEEEECCcHHHHHHHHHHHhcCCCcEEEEccCCC
Q psy14408        431 GDCFDIIIVGASAAGCVLANRLSEVSSLKVLLIEAGGD  468 (720)
Q Consensus       431 d~eyDVVIIGSGiAGLvAA~~LAea~G~KVLVLEKG~~  468 (720)
                      +.++||||||||++|+++|++|++. |++|+||||+..
T Consensus         7 ~~~~dVvIIGaG~aGl~aA~~L~~~-g~~v~iiE~~~~   43 (545)
T 3uox_A            7 SPALDAVVIGAGVTGIYQAFLINQA-GMKVLGIEAGED   43 (545)
T ss_dssp             CCSEEEEEECCSHHHHHHHHHHHHT-TCCEEEECSSSS
T ss_pred             CCCCCEEEECccHHHHHHHHHHHhC-CCCEEEEeCCCC
Confidence            3468999999999999999999998 999999999853

>1pn0_A Phenol 2-monooxygenase; two dimers, TLS refinement, oxidoreductase; HET: FAD; 1.70A {Trichosporon cutaneum} SCOP: c.3.1.2 c.47.1.10 d.16.1.2 PDB: 1foh_A*

Probab=98.41  E-value=8.7e-07  Score=102.81  Aligned_cols=35  Identities=43%  Similarity=0.581  Sum_probs=32.6

Q ss_pred             CcccEEEECCcHHHHHHHHHHHh-----cCCCcEEEEccCC
Q psy14408        432 DCFDIIIVGASAAGCVLANRLSE-----VSSLKVLLIEAGG  467 (720)
Q Consensus       432 ~eyDVVIIGSGiAGLvAA~~LAe-----a~G~KVLVLEKG~  467 (720)
                      .++||||||||++||++|+.|++     . |++|+||||..
T Consensus         7 ~~~dVlIVGaGpaGL~lA~~La~~~~~~~-Gi~v~viE~~~   46 (665)
T 1pn0_A            7 SYCDVLIVGAGPAGLMAARVLSEYVRQKP-DLKVRIIDKRS   46 (665)
T ss_dssp             EEEEEEEECCSHHHHHHHHHHHHHHHHST-TCCEEEECSSS
T ss_pred             CCCcEEEECcCHHHHHHHHHHhccccccC-CCCEEEEeCCC
Confidence            35799999999999999999999     8 99999999974

>2xve_A Flavin-containing monooxygenase; oxidoreductase; HET: FAD; 1.99A {Methylophaga aminisulfidivorans} PDB: 2xvf_A* 2xvh_A* 2xvi_A* 2xvj_A* 2xlt_A* 2vqb_A* 2vq7_A* 2xlu_A* 2xlp_A* 2xls_A* 2xlr_A*

Probab=98.41  E-value=1.3e-06  Score=96.74  Aligned_cols=70  Identities=11%  Similarity=0.143  Sum_probs=45.7

Q ss_pred             HHHHHHHHhcCCCeE--EEcCeEEEEEEEccCCcEEEEEEEec-CCcEEEEEcCcEEEEccCCcchHHHHHHcCC
Q psy14408        637 DAYLTPIAGKRTNLY--VLKRSKVTKVIINDQNVATGVEYVNS-KGETVRVTANKEVILTAGAIANAQLLLLSGI  708 (720)
Q Consensus       637 ~a~L~~Aa~e~aGVk--Ii~gt~VtkIl~e~gGrAtGV~v~dt-~G~e~tIkAkK~VVVAAGa~~Sp~LLl~SGI  708 (720)
                      ..++...+ ++.|++  |+.+++|++|..++++....|++.+. +|+..++.++ .||+|+|.+..+.+..--|+
T Consensus       104 ~~~l~~~~-~~~gv~~~i~~~~~V~~v~~~~~~~~~~V~~~~~~~g~~~~~~~d-~VVvAtG~~s~p~~p~ipG~  176 (464)
T 2xve_A          104 WDYIKGRV-EKAGVRKYIRFNTAVRHVEFNEDSQTFTVTVQDHTTDTIYSEEFD-YVVCCTGHFSTPYVPEFEGF  176 (464)
T ss_dssp             HHHHHHHH-HHHTCGGGEECSEEEEEEEEETTTTEEEEEEEETTTTEEEEEEES-EEEECCCSSSSBCCCCCBTT
T ss_pred             HHHHHHHH-HHcCCcceEEeCCEEEEEEEcCCCCcEEEEEEEcCCCceEEEEcC-EEEECCCCCCCCccCCCCCc
Confidence            35566655 456887  99999999998872222344555542 3545678998 59999997666654332343

>4gcm_A TRXR, thioredoxin reductase; FAD/NAD-linked reductases, PYR redox 2 family, structural GE joint center for structural genomics, JCSG; HET: MSE FAD NAP EPE; 1.80A {Staphylococcus aureus subsp}

Probab=98.41  E-value=1.4e-07  Score=97.26  Aligned_cols=62  Identities=13%  Similarity=0.122  Sum_probs=43.3

Q ss_pred             cCCCeEEEcCeEEEEEEEccCCcEEEEEEEec-CCcEEEEEcCcEEEEccCCcchHHHHHHcCCC
Q psy14408        646 KRTNLYVLKRSKVTKVIINDQNVATGVEYVNS-KGETVRVTANKEVILTAGAIANAQLLLLSGIG  709 (720)
Q Consensus       646 e~aGVkIi~gt~VtkIl~e~gGrAtGV~v~dt-~G~e~tIkAkK~VVVAAGa~~Sp~LLl~SGIg  709 (720)
                      ++.++.++....+..+... +....++..... .+....+.++ .|+++.|......++...|+.
T Consensus       192 ~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~d-~v~~~~g~~~~~~~~~~~g~~  254 (312)
T 4gcm_A          192 KNDKIDFIWSHTLKSINEK-DGKVGSVTLTSTKDGSEETHEAD-GVFIYIGMKPLTAPFKDLGIT  254 (312)
T ss_dssp             HCTTEEEECSEEEEEEEEE-TTEEEEEEEEETTTCCEEEEECS-EEEECSCEEESCGGGGGGTCB
T ss_pred             HhcCcceeeecceeeeecc-ccccccceeeeecCCceeEEeee-eEEeecCCCcCchhHHhccee
Confidence            4778999988888888776 444444444332 4566789998 599999987766666666654

>3qfa_A Thioredoxin reductase 1, cytoplasmic; protein-protein complex, rossmann fold, HO pyridine nucleotide disulfide oxidoreductase, electron TRAN oxidoreductase; HET: FAD; 2.20A {Homo sapiens} PDB: 3qfb_A* 2j3n_A* 2zzc_A* 2zzb_A* 2zz0_A* 2cfy_A* 1h6v_A* 3ean_A* 3eao_A*

Probab=98.40  E-value=1.1e-06  Score=98.51  Aligned_cols=36  Identities=22%  Similarity=0.405  Sum_probs=33.3

Q ss_pred             CCcccEEEECCcHHHHHHHHHHHhcCCCcEEEEccCC
Q psy14408        431 GDCFDIIIVGASAAGCVLANRLSEVSSLKVLLIEAGG  467 (720)
Q Consensus       431 d~eyDVVIIGSGiAGLvAA~~LAea~G~KVLVLEKG~  467 (720)
                      +.+|||||||||.+|++||++|++. |++|+||||..
T Consensus        30 ~~~~DVvVIGgGpaGl~aA~~la~~-G~~V~liEk~~   65 (519)
T 3qfa_A           30 SYDYDLIIIGGGSGGLAAAKEAAQY-GKKVMVLDFVT   65 (519)
T ss_dssp             SCSEEEEEECCSHHHHHHHHHHHHT-TCCEEEECCCC
T ss_pred             CCCCCEEEECCCHHHHHHHHHHHhC-CCeEEEEeccC
Confidence            3568999999999999999999999 99999999964

>2v3a_A Rubredoxin reductase; alkane degradation, NADH oxidoreductase, rubredoxin reductas NAD, flavoprotein, oxidoreductase; HET: FAD; 2.4A {Pseudomonas aeruginosa} PDB: 2v3b_A*

Probab=98.37  E-value=2.7e-06  Score=91.15  Aligned_cols=64  Identities=9%  Similarity=0.097  Sum_probs=46.3

Q ss_pred             HHHHHHHhcCCCeEEEcCeEEEEEEEccCCcEEEEEEEecCCcEEEEEcCcEEEEccCCcchHHHHHHcCCC
Q psy14408        638 AYLTPIAGKRTNLYVLKRSKVTKVIINDQNVATGVEYVNSKGETVRVTANKEVILTAGAIANAQLLLLSGIG  709 (720)
Q Consensus       638 a~L~~Aa~e~aGVkIi~gt~VtkIl~e~gGrAtGV~v~dt~G~e~tIkAkK~VVVAAGa~~Sp~LLl~SGIg  709 (720)
                      ..+.+.+ ++.|++|+++++|++|..+ ++. ..|++.  +|+  ++.++ .||+|+|......+|..+|+.
T Consensus       191 ~~l~~~l-~~~gv~i~~~~~v~~i~~~-~~~-~~v~~~--~g~--~i~~d-~vv~a~G~~p~~~l~~~~g~~  254 (384)
T 2v3a_A          191 KAVQAGL-EGLGVRFHLGPVLASLKKA-GEG-LEAHLS--DGE--VIPCD-LVVSAVGLRPRTELAFAAGLA  254 (384)
T ss_dssp             HHHHHHH-HTTTCEEEESCCEEEEEEE-TTE-EEEEET--TSC--EEEES-EEEECSCEEECCHHHHHTTCC
T ss_pred             HHHHHHH-HHcCCEEEeCCEEEEEEec-CCE-EEEEEC--CCC--EEECC-EEEECcCCCcCHHHHHHCCCC
Confidence            3455555 5789999999999999876 443 344432  463  68898 599999987666688888875

>3fpz_A Thiazole biosynthetic enzyme; FAD, mitochondrion, N thiamine biosynthesis, transit peptide, biosynthetic protei; HET: AHZ; 1.82A {Saccharomyces cerevisiae}

Probab=98.35  E-value=3.4e-07  Score=95.93  Aligned_cols=43  Identities=30%  Similarity=0.300  Sum_probs=36.2

Q ss_pred             CCCcccEEEECCcHHHHHHHHHHHh-cCCCcEEEEccCCCCCCC
Q psy14408        430 SGDCFDIIIVGASAAGCVLANRLSE-VSSLKVLLIEAGGDTPIH  472 (720)
Q Consensus       430 ~d~eyDVVIIGSGiAGLvAA~~LAe-a~G~KVLVLEKG~~~~~s  472 (720)
                      ...++||||||||++||+||++|++ +.|++|+|+||+...++.
T Consensus        62 ~~~~~DV~IIGaGPAGlsAA~~la~~r~G~~V~viEk~~~~GG~  105 (326)
T 3fpz_A           62 KFAVSDVIIVGAGSSGLSAAYVIAKNRPDLKVCIIESSVAPGGG  105 (326)
T ss_dssp             HTTEESEEEECCSHHHHHHHHHHHHHCTTSCEEEECSSSSCCTT
T ss_pred             hccCCCEEEECCCHHHHHHHHHHHHhCCCCeEEEEECCCCCCce
Confidence            3457899999999999999999985 249999999998766543

>3vrd_B FCCB subunit, flavocytochrome C flavin subunit; sulfide oxidation, heme C binding, FAD binding, electron TRA oxidoreductase complex; HET: HEC FAD; 1.50A {Thermochromatium tepidum} PDB: 1fcd_A*

Probab=98.33  E-value=5.7e-07  Score=96.37  Aligned_cols=57  Identities=12%  Similarity=0.060  Sum_probs=41.2

Q ss_pred             cCCCeEEEcCeEEEEEEEccCCcEEEEEEEecCCcEEEEEcCcEEEEccCCcchHHHHHHcCCCC
Q psy14408        646 KRTNLYVLKRSKVTKVIINDQNVATGVEYVNSKGETVRVTANKEVILTAGAIANAQLLLLSGIGP  710 (720)
Q Consensus       646 e~aGVkIi~gt~VtkIl~e~gGrAtGV~v~dt~G~e~tIkAkK~VVVAAGa~~Sp~LLl~SGIgp  710 (720)
                      ++.|++++.+++|+.+..+ ++. ..|++.  +|+  ++.++ .||++.|. ..+.++..+|+..
T Consensus       213 ~~~gi~v~~~~~v~~v~~~-~~~-~~v~~~--~g~--~i~~D-~vi~~~g~-~~~~~~~~~gl~~  269 (401)
T 3vrd_B          213 ENALIEWHPGPDAAVVKTD-TEA-MTVETS--FGE--TFKAA-VINLIPPQ-RAGKIAQSASLTN  269 (401)
T ss_dssp             TTCSEEEECTTTTCEEEEE-TTT-TEEEET--TSC--EEECS-EEEECCCE-EECHHHHHTTCCC
T ss_pred             HhcCcEEEeCceEEEEEec-ccc-eEEEcC--CCc--EEEee-EEEEecCc-CCchhHhhccccc
Confidence            4679999999999999876 322 223333  364  68898 58888885 4557889999864

>2cdu_A NADPH oxidase; flavoenzyme, oxidoreductase; HET: FAD ADP; 1.8A {Lactobacillus sanfranciscensis}

Probab=98.32  E-value=1.9e-06  Score=94.45  Aligned_cols=59  Identities=19%  Similarity=0.174  Sum_probs=42.8

Q ss_pred             HHHHHHHhcCCCeEEEcCeEEEEEEEccCCcEEEEEEEecCCcEEEEEcCcEEEEccCCcchHHHHH
Q psy14408        638 AYLTPIAGKRTNLYVLKRSKVTKVIINDQNVATGVEYVNSKGETVRVTANKEVILTAGAIANAQLLL  704 (720)
Q Consensus       638 a~L~~Aa~e~aGVkIi~gt~VtkIl~e~gGrAtGV~v~dt~G~e~tIkAkK~VVVAAGa~~Sp~LLl  704 (720)
                      ..+.+.+ ++.|++|+++++|++|..+ ++++.+|..   +|+  ++.++ .||+|+|......+|.
T Consensus       195 ~~l~~~l-~~~Gv~i~~~~~v~~i~~~-~~~v~~v~~---~g~--~i~~D-~vv~a~G~~p~~~ll~  253 (452)
T 2cdu_A          195 DILAKDY-EAHGVNLVLGSKVAAFEEV-DDEIITKTL---DGK--EIKSD-IAILCIGFRPNTELLK  253 (452)
T ss_dssp             HHHHHHH-HHTTCEEEESSCEEEEEEE-TTEEEEEET---TSC--EEEES-EEEECCCEEECCGGGT
T ss_pred             HHHHHHH-HHCCCEEEcCCeeEEEEcC-CCeEEEEEe---CCC--EEECC-EEEECcCCCCCHHHHH
Confidence            3454555 5789999999999999875 566666543   353  68898 5999999766655543

>3oc4_A Oxidoreductase, pyridine nucleotide-disulfide FAM; structural genomics, PSI-2, protein structure initiative; HET: FAD; 2.60A {Enterococcus faecalis}

Probab=98.31  E-value=1.5e-06  Score=95.47  Aligned_cols=37  Identities=27%  Similarity=0.337  Sum_probs=33.1

Q ss_pred             ccEEEECCcHHHHHHHHHHHhc-CCCcEEEEccCCCCC
Q psy14408        434 FDIIIVGASAAGCVLANRLSEV-SSLKVLLIEAGGDTP  470 (720)
Q Consensus       434 yDVVIIGSGiAGLvAA~~LAea-~G~KVLVLEKG~~~~  470 (720)
                      .||||||||++|++||.+|+++ +|++|+||||+...+
T Consensus         3 ~~VvIIGgG~AGl~aA~~L~~~~~g~~V~vie~~~~~g   40 (452)
T 3oc4_A            3 LKIVIIGASFAGISAAIASRKKYPQAEISLIDKQATVG   40 (452)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHHCSSSEEEEECSSSCCS
T ss_pred             CCEEEECCCHHHHHHHHHHHhhCcCCcEEEEECCCCCc
Confidence            4999999999999999999985 479999999987653

>2gqw_A Ferredoxin reductase; flavoprotein, oxidoreductase; HET: FAD; 1.40A {Pseudomonas SP} PDB: 1f3p_A* 1d7y_A* 2gr0_A* 2gr1_A* 2gr2_A* 2yvf_A* 2yvg_A* 2yvj_A* 2gr3_A*

Probab=98.29  E-value=4.4e-06  Score=90.65  Aligned_cols=60  Identities=20%  Similarity=0.292  Sum_probs=44.9

Q ss_pred             HHHHHHHhcCCCeEEEcCeEEEEEEEccCCcEEEEEEEecCCcEEEEEcCcEEEEccCCcchHHHHHHcCCC
Q psy14408        638 AYLTPIAGKRTNLYVLKRSKVTKVIINDQNVATGVEYVNSKGETVRVTANKEVILTAGAIANAQLLLLSGIG  709 (720)
Q Consensus       638 a~L~~Aa~e~aGVkIi~gt~VtkIl~e~gGrAtGV~v~dt~G~e~tIkAkK~VVVAAGa~~Sp~LLl~SGIg  709 (720)
                      .++.+.+ ++.|++|+++++|++|. + +    +|++.  +|+  ++.++ .||+|+|......+|..+|+.
T Consensus       191 ~~l~~~l-~~~GV~i~~~~~v~~i~-~-~----~v~~~--~g~--~i~~D-~vi~a~G~~p~~~l~~~~gl~  250 (408)
T 2gqw_A          191 DFVARYH-AAQGVDLRFERSVTGSV-D-G----VVLLD--DGT--RIAAD-MVVVGIGVLANDALARAAGLA  250 (408)
T ss_dssp             HHHHHHH-HHTTCEEEESCCEEEEE-T-T----EEEET--TSC--EEECS-EEEECSCEEECCHHHHHHTCC
T ss_pred             HHHHHHH-HHcCcEEEeCCEEEEEE-C-C----EEEEC--CCC--EEEcC-EEEECcCCCccHHHHHhCCCC
Confidence            3444444 57899999999999998 5 3    45553  364  68898 599999987666788888875

>1vg0_A RAB proteins geranylgeranyltransferase component A 1; RAB prenylation, post-translational modification, protein binding/protein transport complex; HET: GER GDP PG4; 2.20A {Rattus norvegicus} SCOP: c.3.1.3 d.16.1.6 PDB: 1vg9_A* 1ltx_R*

Probab=98.29  E-value=2.5e-06  Score=98.87  Aligned_cols=41  Identities=20%  Similarity=0.310  Sum_probs=37.4

Q ss_pred             CCcccEEEECCcHHHHHHHHHHHhcCCCcEEEEccCCCCCCC
Q psy14408        431 GDCFDIIIVGASAAGCVLANRLSEVSSLKVLLIEAGGDTPIH  472 (720)
Q Consensus       431 d~eyDVVIIGSGiAGLvAA~~LAea~G~KVLVLEKG~~~~~s  472 (720)
                      .++|||||||+|..|++.|..||+. |+|||+|||+.+.++.
T Consensus         6 ~~~~D~~i~GtGl~~~~~a~~~~~~-g~~vl~id~~~~~gg~   46 (650)
T 1vg0_A            6 PSDFDVIVIGTGLPESIIAAACSRS-GQRVLHVDSRSYYGGN   46 (650)
T ss_dssp             CSBCSEEEECCSHHHHHHHHHHHHT-TCCEEEECSSSSSCGG
T ss_pred             CCcCCEEEECCcHHHHHHHHHHHhC-CCEEEEEcCCCcccCc
Confidence            3479999999999999999999999 9999999999887554

>4a5l_A Thioredoxin reductase; oxidoreductase, redox metabolism, oxidative stress; HET: NDP FAD; 1.66A {Entamoeba histolytica} PDB: 4a65_A*

Probab=98.29  E-value=3.4e-07  Score=93.90  Aligned_cols=56  Identities=18%  Similarity=0.265  Sum_probs=44.8

Q ss_pred             cCCCeEEEcCeEEEEEEEccCCcEEEEEEEec-CCcEEEEEcCcEEEEccCCcchHHHH
Q psy14408        646 KRTNLYVLKRSKVTKVIINDQNVATGVEYVNS-KGETVRVTANKEVILTAGAIANAQLL  703 (720)
Q Consensus       646 e~aGVkIi~gt~VtkIl~e~gGrAtGV~v~dt-~G~e~tIkAkK~VVVAAGa~~Sp~LL  703 (720)
                      ...+.+++..+.+.++... ++...|+++.+. .+...++.++ .||+|.|......+|
T Consensus       199 ~~~~~~~~~~~~~~~i~~~-~~~~~~~~~~~~~~~~~~~i~~d-~vi~a~G~~pn~~~l  255 (314)
T 4a5l_A          199 NHPKIEVIWNSELVELEGD-GDLLNGAKIHNLVSGEYKVVPVA-GLFYAIGHSPNSKFL  255 (314)
T ss_dssp             TCTTEEEECSEEEEEEEES-SSSEEEEEEEETTTCCEEEEECS-EEEECSCEEESCGGG
T ss_pred             cccceeeEeeeeeEEEEee-eeccceeEEeecccccceeeccc-cceEecccccChhHh
Confidence            4778999999999999887 777889888764 4556789998 599999976665554

>3ics_A Coenzyme A-disulfide reductase; pyridine nucleotide-disulfide oxidoreductase class I, rhodan coenzyme A, flavin adenine dinucleotide; HET: FAD COA ADP; 1.94A {Bacillus anthracis} PDB: 3icr_A* 3ict_A*

Probab=98.29  E-value=2.4e-06  Score=96.85  Aligned_cols=62  Identities=19%  Similarity=0.252  Sum_probs=45.6

Q ss_pred             HHHHHHHhcCCCeEEEcCeEEEEEEEccCCcEEEEEEEecCCcEEEEEcCcEEEEccCCcchHHHHHHcCCC
Q psy14408        638 AYLTPIAGKRTNLYVLKRSKVTKVIINDQNVATGVEYVNSKGETVRVTANKEVILTAGAIANAQLLLLSGIG  709 (720)
Q Consensus       638 a~L~~Aa~e~aGVkIi~gt~VtkIl~e~gGrAtGV~v~dt~G~e~tIkAkK~VVVAAGa~~Sp~LLl~SGIg  709 (720)
                      ..+.+.+ ++.|++|+++++|++|..+ ++   +|++.  +|+  ++.++ .||+|+|......+|...|+.
T Consensus       232 ~~l~~~l-~~~GV~i~~~~~v~~i~~~-~~---~v~~~--~g~--~i~~D-~Vi~a~G~~p~~~~l~~~g~~  293 (588)
T 3ics_A          232 AYVHEHM-KNHDVELVFEDGVDALEEN-GA---VVRLK--SGS--VIQTD-MLILAIGVQPESSLAKGAGLA  293 (588)
T ss_dssp             HHHHHHH-HHTTCEEECSCCEEEEEGG-GT---EEEET--TSC--EEECS-EEEECSCEEECCHHHHHTTCC
T ss_pred             HHHHHHH-HHcCCEEEECCeEEEEecC-CC---EEEEC--CCC--EEEcC-EEEEccCCCCChHHHHhcCce
Confidence            3444444 5789999999999999754 33   45543  354  68898 599999987777788888875

>1c0p_A D-amino acid oxidase; alpha-beta-alpha motif, flavin containing protein, oxidoreductase; HET: FAD; 1.20A {Rhodosporidium toruloides} SCOP: c.4.1.2 d.16.1.3 PDB: 1c0i_A* 1c0l_A* 1c0k_A*

Probab=98.28  E-value=4.8e-07  Score=95.50  Aligned_cols=36  Identities=14%  Similarity=0.167  Sum_probs=33.4

Q ss_pred             CcccEEEECCcHHHHHHHHHHHhcCCCcEEEEccCCC
Q psy14408        432 DCFDIIIVGASAAGCVLANRLSEVSSLKVLLIEAGGD  468 (720)
Q Consensus       432 ~eyDVVIIGSGiAGLvAA~~LAea~G~KVLVLEKG~~  468 (720)
                      .++||||||||++|+++|++|+++ |++|+||||+..
T Consensus         5 ~~~dVvVIG~Gi~Gls~A~~La~~-G~~V~vle~~~~   40 (363)
T 1c0p_A            5 SQKRVVVLGSGVIGLSSALILARK-GYSVHILARDLP   40 (363)
T ss_dssp             CSCEEEEECCSHHHHHHHHHHHHT-TCEEEEEESSCT
T ss_pred             CCCCEEEECCCHHHHHHHHHHHhC-CCEEEEEeccCC
Confidence            468999999999999999999999 999999999853

>3kd9_A Coenzyme A disulfide reductase; PSI-II, NYSGXRC, oxidoreductase, structural genomics structure initiative; 2.75A {Pyrococcus horikoshii}

Probab=98.28  E-value=5.2e-06  Score=90.87  Aligned_cols=62  Identities=19%  Similarity=0.143  Sum_probs=44.3

Q ss_pred             HHHHHHHhcCCCeEEEcCeEEEEEEEccCCcEEEEEEEecCCcEEEEEcCcEEEEccCCcchHHHHHHcCCC
Q psy14408        638 AYLTPIAGKRTNLYVLKRSKVTKVIINDQNVATGVEYVNSKGETVRVTANKEVILTAGAIANAQLLLLSGIG  709 (720)
Q Consensus       638 a~L~~Aa~e~aGVkIi~gt~VtkIl~e~gGrAtGV~v~dt~G~e~tIkAkK~VVVAAGa~~Sp~LLl~SGIg  709 (720)
                      ..+.+.+ ++. ++++.++.|++|..+ + ++..+. .  +|  .++.++ .||+|+|......+|...|+.
T Consensus       194 ~~l~~~l-~~~-v~i~~~~~v~~i~~~-~-~v~~v~-~--~g--~~i~~D-~Vv~a~G~~p~~~l~~~~gl~  255 (449)
T 3kd9_A          194 DILEEKL-KKH-VNLRLQEITMKIEGE-E-RVEKVV-T--DA--GEYKAE-LVILATGIKPNIELAKQLGVR  255 (449)
T ss_dssp             HHHHHHH-TTT-SEEEESCCEEEEECS-S-SCCEEE-E--TT--EEEECS-EEEECSCEEECCHHHHHTTCC
T ss_pred             HHHHHHH-HhC-cEEEeCCeEEEEecc-C-cEEEEE-e--CC--CEEECC-EEEEeeCCccCHHHHHhCCcc
Confidence            4555555 456 999999999999754 3 444442 2  35  378998 599999987666788888775

>4b1b_A TRXR, thioredoxin reductase; oxidoreductase, FAD, NADPH, thiol-mediated redox metabolism, pyridine nucleotide-disulfide oxidoreductase; HET: FAD; 2.90A {Plasmodium falciparum}

Probab=98.27  E-value=4.2e-06  Score=95.10  Aligned_cols=34  Identities=21%  Similarity=0.385  Sum_probs=32.4

Q ss_pred             cccEEEECCcHHHHHHHHHHHhcCCCcEEEEccCC
Q psy14408        433 CFDIIIVGASAAGCVLANRLSEVSSLKVLLIEAGG  467 (720)
Q Consensus       433 eyDVVIIGSGiAGLvAA~~LAea~G~KVLVLEKG~  467 (720)
                      +|||||||||.+|++||.++|+. |+||+|||+..
T Consensus        42 dYDviVIG~GpaG~~aA~~aa~~-G~kValIE~~~   75 (542)
T 4b1b_A           42 DYDYVVIGGGPGGMASAKEAAAH-GARVLLFDYVK   75 (542)
T ss_dssp             SEEEEEECCSHHHHHHHHHHHTT-TCCEEEECCCC
T ss_pred             CCCEEEECCCHHHHHHHHHHHHC-CCeEEEEeccc
Confidence            69999999999999999999999 99999999874

>1gte_A Dihydropyrimidine dehydrogenase; electron transfer, flavin, iron-sulfur clusters, pyrimidine catabolism, 5-fluorouracil degradation, oxidoreductase; HET: FMN FAD; 1.65A {Sus scrofa} SCOP: a.1.2.2 c.1.4.1 c.3.1.1 c.4.1.1 d.58.1.5 PDB: 1gt8_A* 1gth_A* 1h7w_A* 1h7x_A*

Probab=98.22  E-value=3.9e-06  Score=101.89  Aligned_cols=61  Identities=21%  Similarity=0.259  Sum_probs=45.4

Q ss_pred             CCCeEEEcCeEEEEEEEccCCcEEEEEEEec----C-------CcEEEEEcCcEEEEccCCc-chHHHHHH-cCCC
Q psy14408        647 RTNLYVLKRSKVTKVIINDQNVATGVEYVNS----K-------GETVRVTANKEVILTAGAI-ANAQLLLL-SGIG  709 (720)
Q Consensus       647 ~aGVkIi~gt~VtkIl~e~gGrAtGV~v~dt----~-------G~e~tIkAkK~VVVAAGa~-~Sp~LLl~-SGIg  709 (720)
                      +.|++|+.++.|++|+.+ ++++++|++.+.    +       |++.++.|+ .||+|+|.. ....|+.. .|+.
T Consensus       382 ~~Gv~~~~~~~~~~i~~~-~g~v~~v~~~~~~~~~~g~~~~~~g~~~~i~aD-~Vi~A~G~~~~~~~l~~~~~gl~  455 (1025)
T 1gte_A          382 EEKCEFLPFLSPRKVIVK-GGRIVAVQFVRTEQDETGKWNEDEDQIVHLKAD-VVISAFGSVLRDPKVKEALSPIK  455 (1025)
T ss_dssp             HTTCEEECSEEEEEEEEE-TTEEEEEEEEEEEECTTSCEEEEEEEEEEEECS-EEEECSCEECCCHHHHHHTTTSC
T ss_pred             HcCCEEEeCCCceEEEcc-CCeEEEEEEEEeEEcCCCCcccCCCceEEEECC-EEEECCCCCCCchhhhhcccCce
Confidence            679999999999999876 788888877521    2       334578998 599999974 34566655 4664

>3cgb_A Pyridine nucleotide-disulfide oxidoreductase, CLA; coenzyme A, flavin adenine dinucleotide, selenomethionine, F flavoprotein; HET: COA FAD; 1.90A {Bacillus anthracis str} PDB: 3cgc_A* 3cgd_A* 3cge_A*

Probab=98.21  E-value=2.8e-06  Score=94.15  Aligned_cols=63  Identities=21%  Similarity=0.243  Sum_probs=45.2

Q ss_pred             HHHHHHHhcCCCeEEEcCeEEEEEEEccCCcEEEEEEEecCCcEEEEEcCcEEEEccCCcchHHHHHHcCCC
Q psy14408        638 AYLTPIAGKRTNLYVLKRSKVTKVIINDQNVATGVEYVNSKGETVRVTANKEVILTAGAIANAQLLLLSGIG  709 (720)
Q Consensus       638 a~L~~Aa~e~aGVkIi~gt~VtkIl~e~gGrAtGV~v~dt~G~e~tIkAkK~VVVAAGa~~Sp~LLl~SGIg  709 (720)
                      ..+.+.+ ++.|++|++++.|++|..+  +++.+|..   ++  .++.++ .||+|+|......+|..+|+.
T Consensus       231 ~~l~~~l-~~~Gv~i~~~~~v~~i~~~--~~v~~v~~---~~--~~i~~D-~vi~a~G~~p~~~~l~~~g~~  293 (480)
T 3cgb_A          231 EYIYKEA-DKHHIEILTNENVKAFKGN--ERVEAVET---DK--GTYKAD-LVLVSVGVKPNTDFLEGTNIR  293 (480)
T ss_dssp             HHHHHHH-HHTTCEEECSCCEEEEEES--SBEEEEEE---TT--EEEECS-EEEECSCEEESCGGGTTSCCC
T ss_pred             HHHHHHH-HHcCcEEEcCCEEEEEEcC--CcEEEEEE---CC--CEEEcC-EEEECcCCCcChHHHHhCCcc
Confidence            3444444 4789999999999999764  45555543   23  278998 599999987665677777764

>3ntd_A FAD-dependent pyridine nucleotide-disulphide oxidoreductase; COA, persulfide reductase, rhodanese; HET: COA FAD; 1.99A {Shewanella loihica} PDB: 3nta_A* 3nt6_A*

Probab=98.20  E-value=8.4e-06  Score=91.48  Aligned_cols=35  Identities=26%  Similarity=0.508  Sum_probs=31.9

Q ss_pred             cEEEECCcHHHHHHHHHHHhc-CCCcEEEEccCCCC
Q psy14408        435 DIIIVGASAAGCVLANRLSEV-SSLKVLLIEAGGDT  469 (720)
Q Consensus       435 DVVIIGSGiAGLvAA~~LAea-~G~KVLVLEKG~~~  469 (720)
                      ||||||||++|++||++|+++ +|++|+|+|++...
T Consensus         3 ~VvIIGgG~AGl~aA~~L~~~~~~~~V~lie~~~~~   38 (565)
T 3ntd_A            3 KILIIGGVAGGASAAARARRLSETAEIIMFERGEYV   38 (565)
T ss_dssp             EEEEECSSHHHHHHHHHHHHHCSSSEEEEECSSSCS
T ss_pred             cEEEECCCHHHHHHHHHHHhhCcCCCEEEEECCCCc
Confidence            899999999999999999986 37899999998765

>1rsg_A FMS1 protein; FAD binding motif, oxidoreductase; HET: FAD; 1.90A {Saccharomyces cerevisiae} PDB: 1z6l_A* 3bi2_A* 3bi4_A* 3bi5_A* 3bnm_B* 3bnu_B* 3cn8_B* 3cnd_B* 3cnp_B* 3cns_A* 3cnt_B* 1yy5_A* 1xpq_A*

Probab=98.19  E-value=8.1e-07  Score=99.03  Aligned_cols=40  Identities=28%  Similarity=0.294  Sum_probs=36.5

Q ss_pred             CcccEEEECCcHHHHHHHHHHHhcCC-CcEEEEccCCCCCCC
Q psy14408        432 DCFDIIIVGASAAGCVLANRLSEVSS-LKVLLIEAGGDTPIH  472 (720)
Q Consensus       432 ~eyDVVIIGSGiAGLvAA~~LAea~G-~KVLVLEKG~~~~~s  472 (720)
                      ..+||||||||++||+||++|+++ | ++|+||||....++.
T Consensus         7 ~~~~VvIIGaG~aGL~AA~~L~~~-G~~~V~VlEa~~riGGr   47 (516)
T 1rsg_A            7 AKKKVIIIGAGIAGLKAASTLHQN-GIQDCLVLEARDRVGGR   47 (516)
T ss_dssp             EEEEEEEECCBHHHHHHHHHHHHT-TCCSEEEECSSSSSBTT
T ss_pred             CCCcEEEECCCHHHHHHHHHHHhc-CCCCEEEEeCCCCCCCc
Confidence            457999999999999999999999 9 999999999877655

>2b9w_A Putative aminooxidase; isomerase, conjugated linoleic acid, FAD; HET: FAD 12P; 1.95A {Propionibacterium acnes} PDB: 2b9x_A* 2b9y_A* 2ba9_A* 2bab_A* 2bac_A*

Probab=98.18  E-value=1.3e-06  Score=94.06  Aligned_cols=40  Identities=20%  Similarity=0.187  Sum_probs=36.0

Q ss_pred             CcccEEEECCcHHHHHHHHHHHhcCC-CcEEEEccCCCCCCC
Q psy14408        432 DCFDIIIVGASAAGCVLANRLSEVSS-LKVLLIEAGGDTPIH  472 (720)
Q Consensus       432 ~eyDVVIIGSGiAGLvAA~~LAea~G-~KVLVLEKG~~~~~s  472 (720)
                      ..+||||||||++||+||++|+++ | ++|+|+||....++.
T Consensus         5 ~~~~v~IIGaG~aGl~aA~~L~~~-g~~~v~v~E~~~~~GG~   45 (424)
T 2b9w_A            5 KDSRIAIIGAGPAGLAAGMYLEQA-GFHDYTILERTDHVGGK   45 (424)
T ss_dssp             TTCCEEEECCSHHHHHHHHHHHHT-TCCCEEEECSSSCSSTT
T ss_pred             CCCCEEEECcCHHHHHHHHHHHhC-CCCcEEEEECCCCCCCc
Confidence            457999999999999999999999 9 999999998777544

>2yg5_A Putrescine oxidase; oxidoreductase, flavin; HET: FAD; 1.90A {Rhodococcus erythropolis} PDB: 2yg6_A* 2yg3_A* 2yg4_A* 2yg7_A* 3rha_A*

Probab=98.15  E-value=1.2e-06  Score=95.20  Aligned_cols=40  Identities=33%  Similarity=0.325  Sum_probs=36.0

Q ss_pred             CcccEEEECCcHHHHHHHHHHHhcCCCcEEEEccCCCCCCC
Q psy14408        432 DCFDIIIVGASAAGCVLANRLSEVSSLKVLLIEAGGDTPIH  472 (720)
Q Consensus       432 ~eyDVVIIGSGiAGLvAA~~LAea~G~KVLVLEKG~~~~~s  472 (720)
                      .++||||||||++||+||++|+++ |++|+||||+...++.
T Consensus         4 ~~~~v~iiG~G~~Gl~aA~~l~~~-g~~v~v~E~~~~~GG~   43 (453)
T 2yg5_A            4 LQRDVAIVGAGPSGLAAATALRKA-GLSVAVIEARDRVGGR   43 (453)
T ss_dssp             EEEEEEEECCSHHHHHHHHHHHHT-TCCEEEECSSSSSCTT
T ss_pred             CcCCEEEECCCHHHHHHHHHHHHC-CCcEEEEECCCCCCCc
Confidence            357999999999999999999999 9999999998776544

>2jae_A L-amino acid oxidase; oxidoreductase, dimerisation mode, hydride transfer mechanism, GR2-family, flavoenzyme, FAD containing; HET: FAD; 1.25A {Rhodococcus opacus} PDB: 2jb1_A* 2jb2_A* 2jb3_A*

Probab=98.13  E-value=1.7e-06  Score=95.08  Aligned_cols=40  Identities=23%  Similarity=0.323  Sum_probs=36.2

Q ss_pred             CcccEEEECCcHHHHHHHHHHHhcCCCcEEEEccCCCCCCC
Q psy14408        432 DCFDIIIVGASAAGCVLANRLSEVSSLKVLLIEAGGDTPIH  472 (720)
Q Consensus       432 ~eyDVVIIGSGiAGLvAA~~LAea~G~KVLVLEKG~~~~~s  472 (720)
                      ...||||||||++||+||++|+++ |++|+||||+...++.
T Consensus        10 ~~~~v~IIGaG~aGl~aA~~L~~~-g~~v~v~E~~~~~GG~   49 (489)
T 2jae_A           10 GSHSVVVLGGGPAGLCSAFELQKA-GYKVTVLEARTRPGGR   49 (489)
T ss_dssp             SCCEEEEECCSHHHHHHHHHHHHT-TCEEEEECSSSSSCTT
T ss_pred             CCCCEEEECCCHHHHHHHHHHHHC-CCCEEEEeccCCCCCc
Confidence            457999999999999999999999 9999999998877554

>1v0j_A UDP-galactopyranose mutase; flavoprotein, isomerase; HET: FAD BCN; 2.25A {Mycobacterium tuberculosis}

Probab=98.12  E-value=1.7e-06  Score=93.93  Aligned_cols=41  Identities=24%  Similarity=0.379  Sum_probs=36.3

Q ss_pred             CcccEEEECCcHHHHHHHHHHHhcCCCcEEEEccCCCCCCC
Q psy14408        432 DCFDIIIVGASAAGCVLANRLSEVSSLKVLLIEAGGDTPIH  472 (720)
Q Consensus       432 ~eyDVVIIGSGiAGLvAA~~LAea~G~KVLVLEKG~~~~~s  472 (720)
                      .++||||||||++||+||++|+++.|++|+||||+...++.
T Consensus         6 ~~~~v~IiGaG~~Gl~aA~~L~~~~g~~v~v~E~~~~~GG~   46 (399)
T 1v0j_A            6 ARFDLFVVGSGFFGLTIAERVATQLDKRVLVLERRPHIGGN   46 (399)
T ss_dssp             CSCSEEEECCSHHHHHHHHHHHHHSCCCEEEECSSSSSSGG
T ss_pred             ccCCEEEECCCHHHHHHHHHHHHhCCCCEEEEeCCCCCCCe
Confidence            36899999999999999999999658999999999877554

>1i8t_A UDP-galactopyranose mutase; rossman fold, FAD, contractase, isomerase; HET: FAD; 2.40A {Escherichia coli} SCOP: c.4.1.3 d.16.1.7

Probab=98.08  E-value=1.7e-06  Score=92.86  Aligned_cols=39  Identities=38%  Similarity=0.510  Sum_probs=35.1

Q ss_pred             cccEEEECCcHHHHHHHHHHHhcCCCcEEEEccCCCCCCC
Q psy14408        433 CFDIIIVGASAAGCVLANRLSEVSSLKVLLIEAGGDTPIH  472 (720)
Q Consensus       433 eyDVVIIGSGiAGLvAA~~LAea~G~KVLVLEKG~~~~~s  472 (720)
                      ++||||||||++||+||++|+++ |++|+||||+...++.
T Consensus         1 ~~~v~iiG~G~~Gl~~A~~l~~~-g~~v~v~E~~~~~GG~   39 (367)
T 1i8t_A            1 MYDYIIVGSGLFGAVCANELKKL-NKKVLVIEKRNHIGGN   39 (367)
T ss_dssp             CEEEEEECCSHHHHHHHHHHGGG-TCCEEEECSSSSSSGG
T ss_pred             CCCEEEECcCHHHHHHHHHHHhC-CCcEEEEecCCCCCcc
Confidence            36999999999999999999999 9999999998766543

>2xdo_A TETX2 protein; tetracycline degradation, tigecycline, flavin, bacteroides F oxidoreductase; HET: FAD; 2.09A {Bacteroides thetaiotaomicron} PDB: 2y6q_A* 2xyo_A* 2y6r_A* 3p9u_A*

Probab=98.05  E-value=2.6e-06  Score=91.47  Aligned_cols=37  Identities=22%  Similarity=0.326  Sum_probs=34.0

Q ss_pred             CCcccEEEECCcHHHHHHHHHHHhcCCCcEEEEccCCC
Q psy14408        431 GDCFDIIIVGASAAGCVLANRLSEVSSLKVLLIEAGGD  468 (720)
Q Consensus       431 d~eyDVVIIGSGiAGLvAA~~LAea~G~KVLVLEKG~~  468 (720)
                      +.++||||||||++||++|+.|+++ |++|+||||...
T Consensus        24 ~~~~dV~IVGaG~aGl~~A~~L~~~-G~~v~v~E~~~~   60 (398)
T 2xdo_A           24 LSDKNVAIIGGGPVGLTMAKLLQQN-GIDVSVYERDND   60 (398)
T ss_dssp             CTTCEEEEECCSHHHHHHHHHHHTT-TCEEEEEECSSS
T ss_pred             cCCCCEEEECCCHHHHHHHHHHHHC-CCCEEEEeCCCC
Confidence            4568999999999999999999999 999999999854

>3hdq_A UDP-galactopyranose mutase; substrate and inhibitor, isomerase; HET: GDU FAD; 2.36A {Deinococcus radiodurans} PDB: 3hdy_A* 3he3_A* 3mj4_A*

Probab=98.05  E-value=2.6e-06  Score=93.35  Aligned_cols=41  Identities=37%  Similarity=0.531  Sum_probs=36.5

Q ss_pred             CCcccEEEECCcHHHHHHHHHHHhcCCCcEEEEccCCCCCCC
Q psy14408        431 GDCFDIIIVGASAAGCVLANRLSEVSSLKVLLIEAGGDTPIH  472 (720)
Q Consensus       431 d~eyDVVIIGSGiAGLvAA~~LAea~G~KVLVLEKG~~~~~s  472 (720)
                      ...+||||||||++||+||++|+++ |++|+||||+...++.
T Consensus        27 ~~~~dv~IIGaG~aGl~aA~~l~~~-g~~v~v~E~~~~~GG~   67 (397)
T 3hdq_A           27 SKGFDYLIVGAGFAGSVLAERLASS-GQRVLIVDRRPHIGGN   67 (397)
T ss_dssp             CCCEEEEEECCSHHHHHHHHHHHHT-TCCEEEECSSSSSSGG
T ss_pred             CCCCCEEEECccHHHHHHHHHHHHC-CCceEEEeccCCCCCc
Confidence            3568999999999999999999999 9999999998776443

>4b63_A L-ornithine N5 monooxygenase; oxidoreductase, siderophore, flavin; HET: FAD NAP; 1.90A {Aspergillus fumigatus} PDB: 4b64_A* 4b65_A* 4b66_A* 4b67_A* 4b68_A* 4b69_A*

Probab=98.03  E-value=2e-05  Score=88.11  Aligned_cols=60  Identities=20%  Similarity=0.196  Sum_probs=43.8

Q ss_pred             HHHHHHHHHHhcCCCeEEEcCeEEEEEEEccCC------cEEEEEEEec-CCcEEEEEcCcEEEEccCC
Q psy14408        635 AADAYLTPIAGKRTNLYVLKRSKVTKVIINDQN------VATGVEYVNS-KGETVRVTANKEVILTAGA  696 (720)
Q Consensus       635 aa~a~L~~Aa~e~aGVkIi~gt~VtkIl~e~gG------rAtGV~v~dt-~G~e~tIkAkK~VVVAAGa  696 (720)
                      ....||+.++ ++.+..|+.+++|++|...+.+      ...-|++.+. .|+..++.|+ .||+|+|.
T Consensus       146 E~~~Yl~~~A-~~~~~~vrf~~~V~~v~~~~~~~~~~~~~~~~V~~~~~~~g~~~~~~ar-~vVlatG~  212 (501)
T 4b63_A          146 EFEDYMRWCA-QQFSDVVAYGEEVVEVIPGKSDPSSSVVDFFTVRSRNVETGEISARRTR-KVVIAIGG  212 (501)
T ss_dssp             HHHHHHHHHH-HTTGGGEEESEEEEEEEEECSSTTSSCBCEEEEEEEETTTCCEEEEEEE-EEEECCCC
T ss_pred             HHHHHHHHHH-HHcCCceEcceEEEeeccccccccccccceEEEEEecCCCceEEEEEeC-EEEECcCC
Confidence            3457888887 6778889999999999875111      2345566554 4677789997 69999995

>1sez_A Protoporphyrinogen oxidase, mitochondrial; FAD-binding, para-hydroxy-benzoate-hydroxylase fold (PHBH- fold), monotopic membrane-binding domain; HET: FAD OMN TON; 2.90A {Nicotiana tabacum} SCOP: c.3.1.2 d.16.1.5

Probab=98.03  E-value=2.9e-06  Score=93.44  Aligned_cols=39  Identities=26%  Similarity=0.348  Sum_probs=35.7

Q ss_pred             cccEEEECCcHHHHHHHHHHHhcCCCcEEEEccCCCCCCC
Q psy14408        433 CFDIIIVGASAAGCVLANRLSEVSSLKVLLIEAGGDTPIH  472 (720)
Q Consensus       433 eyDVVIIGSGiAGLvAA~~LAea~G~KVLVLEKG~~~~~s  472 (720)
                      .+||||||||++||+||++|+++ |++|+||||....++.
T Consensus        13 ~~~v~iiG~G~~Gl~aA~~l~~~-g~~v~v~E~~~~~GG~   51 (504)
T 1sez_A           13 AKRVAVIGAGVSGLAAAYKLKIH-GLNVTVFEAEGKAGGK   51 (504)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHTT-SCEEEEECSSSSSCSS
T ss_pred             CCeEEEECCCHHHHHHHHHHHHC-CCcEEEEEeCCCCCCc
Confidence            57999999999999999999999 9999999999877554

>3fbs_A Oxidoreductase; structural genomics, PSI2, MCSG, protein STR initiative, midwest center for structural genomics; HET: FAD; 2.15A {Agrobacterium tumefaciens}

Probab=98.02  E-value=3.1e-06  Score=85.46  Aligned_cols=34  Identities=41%  Similarity=0.637  Sum_probs=31.9

Q ss_pred             cccEEEECCcHHHHHHHHHHHhcCCCcEEEEccCC
Q psy14408        433 CFDIIIVGASAAGCVLANRLSEVSSLKVLLIEAGG  467 (720)
Q Consensus       433 eyDVVIIGSGiAGLvAA~~LAea~G~KVLVLEKG~  467 (720)
                      .+||||||||++|++||++|+++ |++|+||||+.
T Consensus         2 ~~~vvIIG~G~aGl~aA~~l~~~-g~~v~lie~~~   35 (297)
T 3fbs_A            2 KFDVIIIGGSYAGLSAALQLGRA-RKNILLVDAGE   35 (297)
T ss_dssp             CEEEEEECCSHHHHHHHHHHHHT-TCCEEEEECCC
T ss_pred             CCCEEEECCCHHHHHHHHHHHhC-CCCEEEEeCCC
Confidence            47999999999999999999999 99999999864

>2e1m_A L-glutamate oxidase; L-amino acid oxidase, FAD, L-GOX, flavo oxidoreductase; HET: FAD; 2.80A {Streptomyces SP}

Probab=97.97  E-value=5.2e-06  Score=90.34  Aligned_cols=39  Identities=31%  Similarity=0.332  Sum_probs=35.3

Q ss_pred             CcccEEEECCcHHHHHHHHHHHhcCCCcEEEEccC-CCCCC
Q psy14408        432 DCFDIIIVGASAAGCVLANRLSEVSSLKVLLIEAG-GDTPI  471 (720)
Q Consensus       432 ~eyDVVIIGSGiAGLvAA~~LAea~G~KVLVLEKG-~~~~~  471 (720)
                      ..+||||||||++||+||++|+++ |++|+||||. ...++
T Consensus        43 ~~~~V~IIGAGiaGL~aA~~L~~~-G~~V~VlE~~~~~vGG   82 (376)
T 2e1m_A           43 PPKRILIVGAGIAGLVAGDLLTRA-GHDVTILEANANRVGG   82 (376)
T ss_dssp             SCCEEEEECCBHHHHHHHHHHHHT-SCEEEEECSCSSCCBT
T ss_pred             CCceEEEECCCHHHHHHHHHHHHC-CCcEEEEeccccccCC
Confidence            457999999999999999999999 9999999998 76644

>2bi7_A UDP-galactopyranose mutase; FAD, flavoprotein, isomerase, lipopolysaccharide biosynthesi; HET: FAD; 2.0A {Klebsiella pneumoniae} SCOP: c.4.1.3 d.16.1.7 PDB: 2bi8_A* 1wam_A* 3inr_A* 3gf4_A* 3int_A* 3kyb_A*

Probab=97.96  E-value=4.3e-06  Score=90.42  Aligned_cols=39  Identities=28%  Similarity=0.404  Sum_probs=35.3

Q ss_pred             cccEEEECCcHHHHHHHHHHHhcCCCcEEEEccCCCCCCC
Q psy14408        433 CFDIIIVGASAAGCVLANRLSEVSSLKVLLIEAGGDTPIH  472 (720)
Q Consensus       433 eyDVVIIGSGiAGLvAA~~LAea~G~KVLVLEKG~~~~~s  472 (720)
                      ++||+|||||++|+++|++|+++ |++|+|+||+...++.
T Consensus         3 ~~~v~iiG~G~~Gl~~A~~l~~~-g~~v~v~E~~~~~GG~   41 (384)
T 2bi7_A            3 SKKILIVGAGFSGAVIGRQLAEK-GHQVHIIDQRDHIGGN   41 (384)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHTT-TCEEEEEESSSSSSGG
T ss_pred             cCCEEEECcCHHHHHHHHHHHHC-CCcEEEEEecCCcCCc
Confidence            47999999999999999999999 9999999998776543

>2zbw_A Thioredoxin reductase; redox protein, oxidoreductase, structural genomics, NPPSFA, project on protein structural and functional analyses; HET: FAD; 2.10A {Thermus thermophilus}

Probab=97.96  E-value=5e-06  Score=86.08  Aligned_cols=68  Identities=18%  Similarity=0.161  Sum_probs=50.4

Q ss_pred             HHHHHHHhcCCCeEEEcCeEEEEEEEccCCcEEEEEEEec-CCcEEEEEcCcEEEEccCCcchHHHHHHcCCC
Q psy14408        638 AYLTPIAGKRTNLYVLKRSKVTKVIINDQNVATGVEYVNS-KGETVRVTANKEVILTAGAIANAQLLLLSGIG  709 (720)
Q Consensus       638 a~L~~Aa~e~aGVkIi~gt~VtkIl~e~gGrAtGV~v~dt-~G~e~tIkAkK~VVVAAGa~~Sp~LLl~SGIg  709 (720)
                      ..+.+.+ ++.|++|+.++.|++|..+  +++.+|++... +|+..++.++ .||+|+|......+|..+|+.
T Consensus       195 ~~l~~~l-~~~gv~v~~~~~v~~i~~~--~~~~~v~~~~~~~g~~~~i~~D-~vi~a~G~~p~~~~l~~~~~~  263 (335)
T 2zbw_A          195 KELMKAH-EEGRLEVLTPYELRRVEGD--ERVRWAVVFHNQTQEELALEVD-AVLILAGYITKLGPLANWGLA  263 (335)
T ss_dssp             HHHHHHH-HTTSSEEETTEEEEEEEES--SSEEEEEEEETTTCCEEEEECS-EEEECCCEEEECGGGGGSCCC
T ss_pred             HHHHhcc-ccCCeEEecCCcceeEccC--CCeeEEEEEECCCCceEEEecC-EEEEeecCCCCchHhhhccee
Confidence            3455555 5779999999999999864  56778888743 4665689998 599999976555567666664

>3cty_A Thioredoxin reductase; FAD, oxidoreductase, flavin, flavoprotein; HET: FAD; 2.35A {Thermoplasma acidophilum}

Probab=97.96  E-value=4.5e-06  Score=86.17  Aligned_cols=61  Identities=25%  Similarity=0.432  Sum_probs=49.0

Q ss_pred             CCCeEEEcCeEEEEEEEccCCcEEEEEEEec-CCcEEEEEcCcEEEEccCCcchHHHHHHcCCC
Q psy14408        647 RTNLYVLKRSKVTKVIINDQNVATGVEYVNS-KGETVRVTANKEVILTAGAIANAQLLLLSGIG  709 (720)
Q Consensus       647 ~aGVkIi~gt~VtkIl~e~gGrAtGV~v~dt-~G~e~tIkAkK~VVVAAGa~~Sp~LLl~SGIg  709 (720)
                      +.|++|+.+++|++|..+ ++++.+|++.+. +|++.++.++ .||+|+|......+|..+|+.
T Consensus       202 ~~gv~i~~~~~v~~i~~~-~~~v~~v~~~~~~~g~~~~i~~D-~vi~a~G~~p~~~~l~~~gl~  263 (319)
T 3cty_A          202 KRNIPYIMNAQVTEIVGD-GKKVTGVKYKDRTTGEEKLIETD-GVFIYVGLIPQTSFLKDSGVK  263 (319)
T ss_dssp             HTTCCEECSEEEEEEEES-SSSEEEEEEEETTTCCEEEECCS-EEEECCCEEECCGGGTTSCCC
T ss_pred             cCCcEEEcCCeEEEEecC-CceEEEEEEEEcCCCceEEEecC-EEEEeeCCccChHHHhhcccc
Confidence            679999999999999876 677889988753 4666689998 699999976666677766663

>3ihm_A Styrene monooxygenase A; rossman fold, anti-parallel beta strands, dimer, cavity, oxidoreductase; 2.30A {Pseudomonas putida}

Probab=97.94  E-value=4.2e-06  Score=91.45  Aligned_cols=35  Identities=29%  Similarity=0.176  Sum_probs=31.8

Q ss_pred             CcccEEEECCcHHHHHHHHHHHhcCCCcEEEEccCC
Q psy14408        432 DCFDIIIVGASAAGCVLANRLSEVSSLKVLLIEAGG  467 (720)
Q Consensus       432 ~eyDVVIIGSGiAGLvAA~~LAea~G~KVLVLEKG~  467 (720)
                      +..||||||||++||++|+.|+++ |++|+||||..
T Consensus        21 m~~~ViIVGaGpaGl~~A~~La~~-G~~V~viE~~~   55 (430)
T 3ihm_A           21 MKKRIGIVGAGTAGLHLGLFLRQH-DVDVTVYTDRK   55 (430)
T ss_dssp             --CEEEEECCHHHHHHHHHHHHHT-TCEEEEEESCC
T ss_pred             CCCCEEEECCcHHHHHHHHHHHHC-CCeEEEEcCCC
Confidence            346999999999999999999999 99999999975

>3d1c_A Flavin-containing putative monooxygenase; NP_373108.1, struc genomics, joint center for structural genomics, JCSG; HET: FAD UNL; 2.40A {Staphylococcus aureus}

Probab=97.93  E-value=5.6e-06  Score=86.73  Aligned_cols=35  Identities=31%  Similarity=0.564  Sum_probs=32.9

Q ss_pred             CcccEEEECCcHHHHHHHHHHHhcCCC-cEEEEccCC
Q psy14408        432 DCFDIIIVGASAAGCVLANRLSEVSSL-KVLLIEAGG  467 (720)
Q Consensus       432 ~eyDVVIIGSGiAGLvAA~~LAea~G~-KVLVLEKG~  467 (720)
                      .++||||||||++|+++|++|++. |+ +|+|||++.
T Consensus         3 ~~~~vvIIGaG~aGl~aA~~l~~~-g~~~v~lie~~~   38 (369)
T 3d1c_A            3 QHHKVAIIGAGAAGIGMAITLKDF-GITDVIILEKGT   38 (369)
T ss_dssp             CEEEEEEECCSHHHHHHHHHHHHT-TCCCEEEECSSS
T ss_pred             ccCcEEEECcCHHHHHHHHHHHHc-CCCcEEEEecCC
Confidence            468999999999999999999999 99 999999986

>2iid_A L-amino-acid oxidase; flavoenzyme, FAD binding domain, reaction mechanism, sustrat binding, oxidoreductase; HET: NAG FUC PHE FAD; 1.80A {Calloselasma rhodostoma} SCOP: c.3.1.2 d.16.1.5 PDB: 1f8s_A* 1f8r_A* 1reo_A* 1tdk_A* 1tdn_A* 1tdo_A* 3kve_A* 4e0v_A*

Probab=97.91  E-value=7.1e-06  Score=90.40  Aligned_cols=40  Identities=28%  Similarity=0.283  Sum_probs=35.7

Q ss_pred             CcccEEEECCcHHHHHHHHHHHhcCCCcEEEEccCCCCCCC
Q psy14408        432 DCFDIIIVGASAAGCVLANRLSEVSSLKVLLIEAGGDTPIH  472 (720)
Q Consensus       432 ~eyDVVIIGSGiAGLvAA~~LAea~G~KVLVLEKG~~~~~s  472 (720)
                      ...||||||||++||+||+.|+++ |++|+||||....++.
T Consensus        32 ~~~~v~IiGaG~~Gl~aA~~l~~~-g~~v~vlE~~~~~gg~   71 (498)
T 2iid_A           32 NPKHVVIVGAGMAGLSAAYVLAGA-GHQVTVLEASERPGGR   71 (498)
T ss_dssp             SCCEEEEECCBHHHHHHHHHHHHH-TCEEEEECSSSSSBTT
T ss_pred             CCCCEEEECCCHHHHHHHHHHHhC-CCeEEEEECCCCCCCc
Confidence            356999999999999999999999 9999999998776543

>2q7v_A Thioredoxin reductase; rossman fold, FAD, flavoprotein, oxidoreductase, redox- active center; HET: FAD; 1.90A {Deinococcus radiodurans}

Probab=97.89  E-value=6.4e-06  Score=85.21  Aligned_cols=63  Identities=14%  Similarity=0.206  Sum_probs=46.3

Q ss_pred             HHHHHHhcCCCeEEEcCeEEEEEEEccCCcEEEEEEEec-CCcEEEEEcCcEEEEccCCcchHHHHHH
Q psy14408        639 YLTPIAGKRTNLYVLKRSKVTKVIINDQNVATGVEYVNS-KGETVRVTANKEVILTAGAIANAQLLLL  705 (720)
Q Consensus       639 ~L~~Aa~e~aGVkIi~gt~VtkIl~e~gGrAtGV~v~dt-~G~e~tIkAkK~VVVAAGa~~Sp~LLl~  705 (720)
                      ++..+. ++.|++|+.+++|++|..+  +++.+|++.+. +|++.++.++ .||+|+|......+|..
T Consensus       193 ~~~~l~-~~~gv~i~~~~~v~~i~~~--~~v~~v~~~~~~~g~~~~i~~D-~vi~a~G~~p~~~~l~~  256 (325)
T 2q7v_A          193 AQARAF-ANPKMKFIWDTAVEEIQGA--DSVSGVKLRNLKTGEVSELATD-GVFIFIGHVPNTAFVKD  256 (325)
T ss_dssp             HHHHHH-TCTTEEEECSEEEEEEEES--SSEEEEEEEETTTCCEEEEECS-EEEECSCEEESCGGGTT
T ss_pred             HHHHHH-hcCCceEecCCceEEEccC--CcEEEEEEEECCCCcEEEEEcC-EEEEccCCCCChHHHhh
Confidence            344444 4569999999999999864  56788988753 5766789998 69999997655455543

>3dk9_A Grase, GR, glutathione reductase; flavoenzyme, nicotinamide, acetylation, alternative initiation, cytoplasm, FAD, flavoprotein, mitochondrion, NADP; HET: SO4 FAD; 0.95A {Homo sapiens} PDB: 1bwc_A* 1gra_A* 1gre_A* 1grf_A* 1grh_A* 1grb_A* 2gh5_A* 1gsn_A* 3dk4_A* 3dk8_A* 3djj_A* 3grs_A* 3sqp_A* 4gr1_A* 2aaq_A* 1dnc_A* 1grg_A* 1grt_A* 1xan_A* 5grt_A* ...

Probab=97.87  E-value=6.8e-06  Score=90.67  Aligned_cols=37  Identities=19%  Similarity=0.438  Sum_probs=33.8

Q ss_pred             CCCcccEEEECCcHHHHHHHHHHHhcCCCcEEEEccCC
Q psy14408        430 SGDCFDIIIVGASAAGCVLANRLSEVSSLKVLLIEAGG  467 (720)
Q Consensus       430 ~d~eyDVVIIGSGiAGLvAA~~LAea~G~KVLVLEKG~  467 (720)
                      .+.++||||||||++|++||++|++. |++|+||||+.
T Consensus        17 ~~~~~dVvIIGgG~aGl~aA~~la~~-G~~V~liE~~~   53 (478)
T 3dk9_A           17 AVASYDYLVIGGGSGGLASARRAAEL-GARAAVVESHK   53 (478)
T ss_dssp             CEEECSEEEECCSHHHHHHHHHHHHT-TCCEEEEESSC
T ss_pred             cCCCCCEEEECCCHHHHHHHHHHHhC-CCeEEEEecCC
Confidence            34568999999999999999999999 99999999874

>2ywl_A Thioredoxin reductase related protein; uncharacterized conserved protein, rossmann fold, structural genomics, NPPSFA; HET: FAD; 1.60A {Thermus thermophilus} PDB: 2cvj_A*

Probab=97.86  E-value=9.9e-06  Score=77.01  Aligned_cols=33  Identities=36%  Similarity=0.646  Sum_probs=31.6

Q ss_pred             ccEEEECCcHHHHHHHHHHHhcCCCcEEEEccCC
Q psy14408        434 FDIIIVGASAAGCVLANRLSEVSSLKVLLIEAGG  467 (720)
Q Consensus       434 yDVVIIGSGiAGLvAA~~LAea~G~KVLVLEKG~  467 (720)
                      +||||||||++|+.+|..|++. |.+|+|||++.
T Consensus         2 ~~vvIIGgG~~Gl~~A~~l~~~-g~~v~lie~~~   34 (180)
T 2ywl_A            2 WDVIVVGGGPSGLSAALFLARA-GLKVLVLDGGR   34 (180)
T ss_dssp             EEEEEECCSHHHHHHHHHHHHT-TCCEEEEECSC
T ss_pred             CeEEEECCCHHHHHHHHHHHHC-CCcEEEEeCCC
Confidence            6999999999999999999999 99999999984

>4dsg_A UDP-galactopyranose mutase; rossmann fold, flavin adenine dinucleotide, isomerase; HET: FAD UDP; 2.25A {Trypanosoma cruzi} PDB: 4dsh_A*

Probab=97.84  E-value=1.1e-05  Score=89.90  Aligned_cols=40  Identities=28%  Similarity=0.233  Sum_probs=35.6

Q ss_pred             CcccEEEECCcHHHHHHHHHHHhcCC-CcEEEEccCCCCCCC
Q psy14408        432 DCFDIIIVGASAAGCVLANRLSEVSS-LKVLLIEAGGDTPIH  472 (720)
Q Consensus       432 ~eyDVVIIGSGiAGLvAA~~LAea~G-~KVLVLEKG~~~~~s  472 (720)
                      ..+||||||||++||+||++|+++ | ++|+|+||+...++.
T Consensus         8 ~~~~v~iiG~G~~Gl~~A~~l~~~-g~~~v~v~E~~~~~GG~   48 (484)
T 4dsg_A            8 LTPKIVIIGAGPTGLGAAVRLTEL-GYKNWHLYECNDTPGGL   48 (484)
T ss_dssp             CSCCEEEECCSHHHHHHHHHHHHT-TCCSEEEEESSSSSSGG
T ss_pred             cCCCEEEECcCHHHHHHHHHHHHc-CCCCEEEEeCCCCCCCe
Confidence            357999999999999999999999 8 899999998776544

>2q0l_A TRXR, thioredoxin reductase; bacterial thiredoxin reductase, NADP+ B reduced izoalloxazine bending, oxidoreductase; HET: FAD NAP; 1.45A {Helicobacter pylori} PDB: 2q0k_A* 3ish_A*

Probab=97.84  E-value=9.7e-06  Score=83.03  Aligned_cols=66  Identities=12%  Similarity=0.103  Sum_probs=49.0

Q ss_pred             HHHHHHhcCCCeEEEcCeEEEEEEEccCCcEEEEEEEec-CCcEEEEEcCcEEEEccCCcchHHHHHHcC
Q psy14408        639 YLTPIAGKRTNLYVLKRSKVTKVIINDQNVATGVEYVNS-KGETVRVTANKEVILTAGAIANAQLLLLSG  707 (720)
Q Consensus       639 ~L~~Aa~e~aGVkIi~gt~VtkIl~e~gGrAtGV~v~dt-~G~e~tIkAkK~VVVAAGa~~Sp~LLl~SG  707 (720)
                      ++..+. ++.|++|+.++.|++|..+ ++++.+|++.+. +|++.++.++ .||+|+|......+|..+|
T Consensus       184 ~~~~l~-~~~gv~v~~~~~v~~i~~~-~~~v~~v~~~~~~~g~~~~i~~D-~vi~a~G~~p~~~~l~~~g  250 (311)
T 2q0l_A          184 TLEHAK-NNDKIEFLTPYVVEEIKGD-ASGVSSLSIKNTATNEKRELVVP-GFFIFVGYDVNNAVLKQED  250 (311)
T ss_dssp             HHHHHH-TCTTEEEETTEEEEEEEEE-TTEEEEEEEEETTTCCEEEEECS-EEEECSCEEECCGGGBCTT
T ss_pred             HHHHHh-hCCCeEEEeCCEEEEEECC-CCcEeEEEEEecCCCceEEEecC-EEEEEecCccChhhhhccc
Confidence            344444 3579999999999999876 577778888743 4666689998 5999999766556665553

>2qae_A Lipoamide, dihydrolipoyl dehydrogenase; FAD-cystine-oxidoreductase, homodimer; HET: FAD; 1.90A {Trypanosoma cruzi}

Probab=97.83  E-value=8.8e-06  Score=89.54  Aligned_cols=60  Identities=15%  Similarity=0.168  Sum_probs=41.7

Q ss_pred             CCCeEEEcCeEEEEEEEccCCcEEEEEEEecCCcEEEEEcCcEEEEccCCcchHHH--HHHcCCC
Q psy14408        647 RTNLYVLKRSKVTKVIINDQNVATGVEYVNSKGETVRVTANKEVILTAGAIANAQL--LLLSGIG  709 (720)
Q Consensus       647 ~aGVkIi~gt~VtkIl~e~gGrAtGV~v~dt~G~e~tIkAkK~VVVAAGa~~Sp~L--Ll~SGIg  709 (720)
                      +.|++|+++++|++|..+ +++ ..|++.+.+|+..++.++ .||+|+|......+  |...|+.
T Consensus       228 ~~gv~i~~~~~v~~i~~~-~~~-~~v~~~~~~g~~~~i~~D-~vv~a~G~~p~~~~l~l~~~gl~  289 (468)
T 2qae_A          228 NEKMKFMTSTKVVGGTNN-GDS-VSLEVEGKNGKRETVTCE-ALLVSVGRRPFTGGLGLDKINVA  289 (468)
T ss_dssp             HTCCEEECSCEEEEEEEC-SSS-EEEEEECC---EEEEEES-EEEECSCEEECCTTSCHHHHTCC
T ss_pred             cCCcEEEeCCEEEEEEEc-CCe-EEEEEEcCCCceEEEECC-EEEECCCcccCCCCCCchhcCCc
Confidence            679999999999999876 444 345554223544578998 59999997666555  5666664

>1vdc_A NTR, NADPH dependent thioredoxin reductase; hypothetical protein, redox-active center, oxidoreductase, D oxidoreductase; HET: FAD; 2.50A {Arabidopsis thaliana} SCOP: c.3.1.5 c.3.1.5 PDB: 2whd_A*

Probab=97.82  E-value=7.2e-06  Score=84.81  Aligned_cols=63  Identities=16%  Similarity=0.256  Sum_probs=47.5

Q ss_pred             HHHhcCCCeEEEcCeEEEEEEEccCC--cEEEEEEEec-CCcEEEEEcCcEEEEccCCcchHHHHHHcCC
Q psy14408        642 PIAGKRTNLYVLKRSKVTKVIINDQN--VATGVEYVNS-KGETVRVTANKEVILTAGAIANAQLLLLSGI  708 (720)
Q Consensus       642 ~Aa~e~aGVkIi~gt~VtkIl~e~gG--rAtGV~v~dt-~G~e~tIkAkK~VVVAAGa~~Sp~LLl~SGI  708 (720)
                      .++ ++.|++|+.++.|++|..+ ++  ++.+|++.+. +|+..++.++ .||+|+|......+|. +|+
T Consensus       203 ~~~-~~~gv~i~~~~~v~~i~~~-~~~~~v~~v~~~~~~~g~~~~i~~D-~vi~a~G~~p~~~~~~-~~l  268 (333)
T 1vdc_A          203 RAL-SNPKIDVIWNSSVVEAYGD-GERDVLGGLKVKNVVTGDVSDLKVS-GLFFAIGHEPATKFLD-GGV  268 (333)
T ss_dssp             HHH-TCTTEEEECSEEEEEEEES-SSSSSEEEEEEEETTTCCEEEEECS-EEEECSCEEESCGGGT-TSS
T ss_pred             HHH-hCCCeeEecCCceEEEeCC-CCccceeeEEEEecCCCceEEEecC-EEEEEeCCccchHHhh-ccc
Confidence            444 5789999999999999876 44  7888888753 4666789998 5999999765555443 454

>1dxl_A Dihydrolipoamide dehydrogenase; oxidoreductase, multienzyme complex protein, pyruvate dehydrogenase complex, glycine decarboxylase complex; HET: FAD; 3.15A {Pisum sativum} SCOP: c.3.1.5 c.3.1.5 d.87.1.1

Probab=97.82  E-value=1.4e-05  Score=87.81  Aligned_cols=38  Identities=29%  Similarity=0.451  Sum_probs=34.5

Q ss_pred             CcccEEEECCcHHHHHHHHHHHhcCCCcEEEEccCCCCC
Q psy14408        432 DCFDIIIVGASAAGCVLANRLSEVSSLKVLLIEAGGDTP  470 (720)
Q Consensus       432 ~eyDVVIIGSGiAGLvAA~~LAea~G~KVLVLEKG~~~~  470 (720)
                      .++||||||||++|++||++|++. |++|+||||+...+
T Consensus         5 ~~~dvvIIGaG~aGl~aA~~l~~~-g~~V~liE~~~~~G   42 (470)
T 1dxl_A            5 DENDVVIIGGGPGGYVAAIKAAQL-GFKTTCIEKRGALG   42 (470)
T ss_dssp             CCCCEEEECCSHHHHHHHHHHHHH-TCCEEEEECSSSSC
T ss_pred             ccCCEEEECCCHHHHHHHHHHHHC-CCeEEEEeCCCCcc
Confidence            458999999999999999999999 99999999986543

>2a8x_A Dihydrolipoyl dehydrogenase, E3 component of alpha; lipoamide dehydrogenase, pyruvate dehydrogenase, alpha keto acid dehydrogenase; HET: FAD; 2.40A {Mycobacterium tuberculosis} PDB: 3ii4_A*

Probab=97.82  E-value=9.5e-06  Score=89.19  Aligned_cols=67  Identities=18%  Similarity=0.218  Sum_probs=46.2

Q ss_pred             HHHHHHHhcCCCeEEEcCeEEEEEEEccCCcEEEEEEEecCCcEEEEEcCcEEEEccCCcchHHH--HHHcCCC
Q psy14408        638 AYLTPIAGKRTNLYVLKRSKVTKVIINDQNVATGVEYVNSKGETVRVTANKEVILTAGAIANAQL--LLLSGIG  709 (720)
Q Consensus       638 a~L~~Aa~e~aGVkIi~gt~VtkIl~e~gGrAtGV~v~dt~G~e~tIkAkK~VVVAAGa~~Sp~L--Ll~SGIg  709 (720)
                      .++.+.+ ++.|++|+++++|++|..+ ++++ .|++.+ +|+..++.++ .||+|+|......+  |...|+.
T Consensus       216 ~~l~~~l-~~~gv~i~~~~~v~~i~~~-~~~~-~v~~~~-~g~~~~~~~D-~vv~a~G~~p~~~~l~~~~~gl~  284 (464)
T 2a8x_A          216 KEIEKQF-KKLGVTILTATKVESIADG-GSQV-TVTVTK-DGVAQELKAE-KVLQAIGFAPNVEGYGLDKAGVA  284 (464)
T ss_dssp             HHHHHHH-HHHTCEEECSCEEEEEEEC-SSCE-EEEEES-SSCEEEEEES-EEEECSCEEECCSSSCHHHHTCC
T ss_pred             HHHHHHH-HHcCCEEEeCcEEEEEEEc-CCeE-EEEEEc-CCceEEEEcC-EEEECCCCCccCCCCCchhcCCc
Confidence            3444544 4779999999999999876 4443 344442 3655678998 59999997655555  5666664

>1b37_A Protein (polyamine oxidase); flavin-dependent amine oxidase, oxidoreductase; HET: NAG FCA MAN FAD; 1.90A {Zea mays} SCOP: c.3.1.2 d.16.1.5 PDB: 1b5q_A* 1h81_A* 1h82_A* 1h83_A* 1h84_A* 1h86_A* 3kpf_A* 3ku9_A* 3l1r_A*

Probab=97.79  E-value=1.3e-05  Score=87.91  Aligned_cols=39  Identities=33%  Similarity=0.452  Sum_probs=34.6

Q ss_pred             cccEEEECCcHHHHHHHHHHHhcCCC-cEEEEccCCCCCCC
Q psy14408        433 CFDIIIVGASAAGCVLANRLSEVSSL-KVLLIEAGGDTPIH  472 (720)
Q Consensus       433 eyDVVIIGSGiAGLvAA~~LAea~G~-KVLVLEKG~~~~~s  472 (720)
                      .+||||||||++||++|++|+++ |+ +|+||||+...++.
T Consensus         4 ~~~~~iiG~G~~g~~~a~~l~~~-g~~~v~~~e~~~~~gg~   43 (472)
T 1b37_A            4 GPRVIVVGAGMSGISAAKRLSEA-GITDLLILEATDHIGGR   43 (472)
T ss_dssp             -CCEEEECCBHHHHHHHHHHHHT-TCCCEEEECSSSSSBTT
T ss_pred             CCeEEEECCCHHHHHHHHHHHhc-CCCceEEEeCCCCCCCc
Confidence            57999999999999999999999 98 89999998776544

>1w4x_A Phenylacetone monooxygenase; baeyer-villiger, FAD; HET: FAD; 1.7A {Thermobifida fusca} SCOP: c.3.1.5 c.3.1.5 PDB: 2ylr_A* 2yls_A* 2ylt_A* 2ym1_A* 2ylw_A* 2ym2_A* 2ylx_A* 2ylz_A*

Probab=97.79  E-value=1.5e-05  Score=89.72  Aligned_cols=37  Identities=35%  Similarity=0.548  Sum_probs=34.3

Q ss_pred             CcccEEEECCcHHHHHHHHHHHhcCCCcEEEEccCCCC
Q psy14408        432 DCFDIIIVGASAAGCVLANRLSEVSSLKVLLIEAGGDT  469 (720)
Q Consensus       432 ~eyDVVIIGSGiAGLvAA~~LAea~G~KVLVLEKG~~~  469 (720)
                      .++||||||||++|+++|++|+++ |++|+||||+...
T Consensus        15 ~~~dVvIIGaG~aGl~aA~~L~~~-G~~v~iiE~~~~~   51 (542)
T 1w4x_A           15 EEVDVLVVGAGFSGLYALYRLREL-GRSVHVIETAGDV   51 (542)
T ss_dssp             SEEEEEEECCSHHHHHHHHHHHHT-TCCEEEECSSSSS
T ss_pred             CCCCEEEECccHHHHHHHHHHHhC-CCCEEEEeCCCCC
Confidence            468999999999999999999999 9999999998654

>1fl2_A Alkyl hydroperoxide reductase subunit F; reactive oxygen, FAD, disulphi oxidoreductase, oxidoreductase; HET: FAD; 1.90A {Escherichia coli} SCOP: c.3.1.5 c.3.1.5

Probab=97.79  E-value=1.3e-05  Score=82.14  Aligned_cols=56  Identities=18%  Similarity=0.330  Sum_probs=44.6

Q ss_pred             CCCeEEEcCeEEEEEEEccCCcEEEEEEEec-CCcEEEEEcCcEEEEccCCcchHHHHH
Q psy14408        647 RTNLYVLKRSKVTKVIINDQNVATGVEYVNS-KGETVRVTANKEVILTAGAIANAQLLL  704 (720)
Q Consensus       647 ~aGVkIi~gt~VtkIl~e~gGrAtGV~v~dt-~G~e~tIkAkK~VVVAAGa~~Sp~LLl  704 (720)
                      ..|++|+.+++|++|..+ ++++.+|++.+. +|++.++.++ .||+|+|......+|.
T Consensus       192 ~~gv~v~~~~~v~~i~~~-~~~v~~v~~~~~~~g~~~~i~~D-~vi~a~G~~p~~~~l~  248 (310)
T 1fl2_A          192 LKNVDIILNAQTTEVKGD-GSKVVGLEYRDRVSGDIHNIELA-GIFVQIGLLPNTNWLE  248 (310)
T ss_dssp             CTTEEEESSEEEEEEEES-SSSEEEEEEEETTTCCEEEEECS-EEEECSCEEESCGGGT
T ss_pred             CCCeEEecCCceEEEEcC-CCcEEEEEEEECCCCcEEEEEcC-EEEEeeCCccCchHHh
Confidence            369999999999999876 678889998863 4666789998 5999999655545554

>2hqm_A GR, grase, glutathione reductase; glutathione reductase complexed with FAD, oxidoreductase; HET: NAG FAD GSH; 2.40A {Saccharomyces cerevisiae}

Probab=97.78  E-value=1.2e-05  Score=88.97  Aligned_cols=35  Identities=29%  Similarity=0.537  Sum_probs=32.9

Q ss_pred             CcccEEEECCcHHHHHHHHHHHhcCCCcEEEEccCC
Q psy14408        432 DCFDIIIVGASAAGCVLANRLSEVSSLKVLLIEAGG  467 (720)
Q Consensus       432 ~eyDVVIIGSGiAGLvAA~~LAea~G~KVLVLEKG~  467 (720)
                      .++||||||||.+|++||++|++. |++|+||||+.
T Consensus        10 ~~~dVvVIGgG~aGl~aA~~l~~~-g~~V~liE~~~   44 (479)
T 2hqm_A           10 KHYDYLVIGGGSGGVASARRAASY-GAKTLLVEAKA   44 (479)
T ss_dssp             CEEEEEEECCSHHHHHHHHHHHHT-SCCEEEEESSC
T ss_pred             ccCCEEEEcCCHHHHHHHHHHHHC-CCcEEEEeCCC
Confidence            468999999999999999999999 99999999974

>2yqu_A 2-oxoglutarate dehydrogenase E3 component; lipoamide dehydrogenase, 2-oxoglutarate dehydrogenase comple pyruvate dehydrogenase complex; HET: FAD; 1.70A {Thermus thermophilus} PDB: 2eq7_A*

Probab=97.77  E-value=1.2e-05  Score=88.08  Aligned_cols=36  Identities=28%  Similarity=0.528  Sum_probs=33.2

Q ss_pred             cccEEEECCcHHHHHHHHHHHhcCCCcEEEEccCCCC
Q psy14408        433 CFDIIIVGASAAGCVLANRLSEVSSLKVLLIEAGGDT  469 (720)
Q Consensus       433 eyDVVIIGSGiAGLvAA~~LAea~G~KVLVLEKG~~~  469 (720)
                      ++||||||||.+|++||.+|++. |++|+||||+...
T Consensus         1 ~~dvvIIG~G~aGl~aA~~l~~~-g~~V~lie~~~~~   36 (455)
T 2yqu_A            1 MYDLLVIGAGPGGYVAAIRAAQL-GMKVGVVEKEKAL   36 (455)
T ss_dssp             CEEEEEECCSHHHHHHHHHHHHT-TCCEEEEESSSSS
T ss_pred             CCCEEEECCChhHHHHHHHHHHC-CCeEEEEeCCCCC
Confidence            37999999999999999999999 9999999998544

>1onf_A GR, grase, glutathione reductase; oxidoreductase; HET: FAD; 2.60A {Plasmodium falciparum} SCOP: c.3.1.5 c.3.1.5 d.87.1.1

Probab=97.77  E-value=1.5e-05  Score=88.89  Aligned_cols=34  Identities=29%  Similarity=0.559  Sum_probs=32.4

Q ss_pred             cccEEEECCcHHHHHHHHHHHhcCCCcEEEEccCC
Q psy14408        433 CFDIIIVGASAAGCVLANRLSEVSSLKVLLIEAGG  467 (720)
Q Consensus       433 eyDVVIIGSGiAGLvAA~~LAea~G~KVLVLEKG~  467 (720)
                      ++||||||||.+|++||++|++. |++|+||||+.
T Consensus         2 ~~dVvIIGgG~aGl~aA~~l~~~-g~~V~liE~~~   35 (500)
T 1onf_A            2 VYDLIVIGGGSGGMAAARRAARH-NAKVALVEKSR   35 (500)
T ss_dssp             CBSEEEECCSHHHHHHHHHHHHT-TCCEEEEESSS
T ss_pred             ccCEEEECCCHHHHHHHHHHHHC-CCcEEEEeCCC
Confidence            58999999999999999999999 99999999984

>2a87_A TRXR, TR, thioredoxin reductase; FAD, NAP, NMA, TLS, oxidoreduct structural genomics, PSI, protein structure initiative; HET: FAD NAP; 3.00A {Mycobacterium tuberculosis}

Probab=97.76  E-value=1.2e-05  Score=83.69  Aligned_cols=59  Identities=17%  Similarity=0.263  Sum_probs=42.7

Q ss_pred             cCCCeEEEcCeEEEEEEEccCCcEEEEEEEec-CCcEEEEEcCcEEEEccCCcchHHHHHHcCC
Q psy14408        646 KRTNLYVLKRSKVTKVIINDQNVATGVEYVNS-KGETVRVTANKEVILTAGAIANAQLLLLSGI  708 (720)
Q Consensus       646 e~aGVkIi~gt~VtkIl~e~gGrAtGV~v~dt-~G~e~tIkAkK~VVVAAGa~~Sp~LLl~SGI  708 (720)
                      ++.|++|+++++|++|..+  +++.+|++.+. +|+..++.++ .||+|+|......+|. .|+
T Consensus       202 ~~~gV~v~~~~~v~~i~~~--~~~~~v~~~~~~~g~~~~i~~D-~vi~a~G~~p~~~~~~-~~l  261 (335)
T 2a87_A          202 NNDKIRFLTNHTVVAVDGD--TTVTGLRVRDTNTGAETTLPVT-GVFVAIGHEPRSGLVR-EAI  261 (335)
T ss_dssp             HCTTEEEECSEEEEEEECS--SSCCEEEEEEETTSCCEEECCS-CEEECSCEEECCTTTB-TTB
T ss_pred             ccCCcEEEeCceeEEEecC--CcEeEEEEEEcCCCceEEeecC-EEEEccCCccChhHhh-ccc
Confidence            4789999999999999855  35567777653 4555688998 5999999765544443 444

>1zmd_A Dihydrolipoyl dehydrogenase; lipoamide dehydrogenase, pyruvate dehydrogenase, alpha- ketoglutarate dehydrogenase; HET: FAD NAI; 2.08A {Homo sapiens} PDB: 1zmc_A* 2f5z_A* 1zy8_A* 3rnm_A*

Probab=97.76  E-value=1.2e-05  Score=88.47  Aligned_cols=37  Identities=22%  Similarity=0.347  Sum_probs=33.9

Q ss_pred             CcccEEEECCcHHHHHHHHHHHhcCCCcEEEEccCCCC
Q psy14408        432 DCFDIIIVGASAAGCVLANRLSEVSSLKVLLIEAGGDT  469 (720)
Q Consensus       432 ~eyDVVIIGSGiAGLvAA~~LAea~G~KVLVLEKG~~~  469 (720)
                      .++||||||||++|++||.+|++. |++|+||||+...
T Consensus         5 ~~~dvvIIGgG~aGl~aA~~l~~~-g~~V~liE~~~~~   41 (474)
T 1zmd_A            5 IDADVTVIGSGPGGYVAAIKAAQL-GFKTVCIEKNETL   41 (474)
T ss_dssp             EEEEEEEECCSHHHHHHHHHHHHT-TCCEEEEECSSSS
T ss_pred             CCCCEEEECCCHHHHHHHHHHHhC-CCeEEEEeCCCCc
Confidence            458999999999999999999999 9999999998644

>1v59_A Dihydrolipoamide dehydrogenase; 2-oxoacid dehydroganese complex, pyruvate dehydrogenase complex; HET: FAD NAD; 2.20A {Saccharomyces cerevisiae} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1jeh_A*

Probab=97.75  E-value=1.3e-05  Score=88.26  Aligned_cols=70  Identities=13%  Similarity=0.093  Sum_probs=46.3

Q ss_pred             HHHHHHHhcCCCeEEEcCeEEEEEEEccCCcEEEEEEEec-CCcEEEEEcCcEEEEccCCcchHH--HHHHcCCC
Q psy14408        638 AYLTPIAGKRTNLYVLKRSKVTKVIINDQNVATGVEYVNS-KGETVRVTANKEVILTAGAIANAQ--LLLLSGIG  709 (720)
Q Consensus       638 a~L~~Aa~e~aGVkIi~gt~VtkIl~e~gGrAtGV~v~dt-~G~e~tIkAkK~VVVAAGa~~Sp~--LLl~SGIg  709 (720)
                      ..+.+.+ ++.|++|+++++|++|..+++++...|++.+. +|...++.++ .||+|+|......  +|...|+.
T Consensus       228 ~~l~~~l-~~~gv~i~~~~~v~~i~~~~~~~~~~v~~~~~~~g~~~~~~~D-~vv~a~G~~p~~~~l~l~~~g~~  300 (478)
T 1v59_A          228 KATQKFL-KKQGLDFKLSTKVISAKRNDDKNVVEIVVEDTKTNKQENLEAE-VLLVAVGRRPYIAGLGAEKIGLE  300 (478)
T ss_dssp             HHHHHHH-HHTTCEEECSEEEEEEEEETTTTEEEEEEEETTTTEEEEEEES-EEEECSCEEECCTTSCTTTTTCC
T ss_pred             HHHHHHH-HHCCCEEEeCCEEEEEEEecCCCeEEEEEEEcCCCCceEEECC-EEEECCCCCcCCCCCCchhcCce
Confidence            3455555 47899999999999998710233455666531 2434578998 5999999765554  45566654

>1ojt_A Surface protein; redox-active center, glycolysis, oxidoreductase, NAD, flavop FAD, P64K; HET: FAD; 2.75A {Neisseria meningitidis} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1bhy_A*

Probab=97.75  E-value=1.5e-05  Score=88.24  Aligned_cols=36  Identities=22%  Similarity=0.388  Sum_probs=33.3

Q ss_pred             cccEEEECCcHHHHHHHHHHHhcCCCcEEEEccCCCC
Q psy14408        433 CFDIIIVGASAAGCVLANRLSEVSSLKVLLIEAGGDT  469 (720)
Q Consensus       433 eyDVVIIGSGiAGLvAA~~LAea~G~KVLVLEKG~~~  469 (720)
                      ++||||||||.+|++||++|++. |++|+||||....
T Consensus         6 ~~dVvIIGaG~aGl~aA~~l~~~-G~~V~liE~~~~~   41 (482)
T 1ojt_A            6 EYDVVVLGGGPGGYSAAFAAADE-GLKVAIVERYKTL   41 (482)
T ss_dssp             EEEEEEECCSHHHHHHHHHHHHT-TCCEEEEESSSCS
T ss_pred             cCCEEEECCCHHHHHHHHHHHhC-CCeEEEEeCCCCC
Confidence            68999999999999999999999 9999999996544

>1zk7_A HGII, reductase, mercuric reductase; mercuric ION reductase, oxidoreductase; HET: FAD; 1.60A {Pseudomonas aeruginosa} PDB: 1zx9_A*

Probab=97.73  E-value=1.7e-05  Score=87.14  Aligned_cols=35  Identities=26%  Similarity=0.349  Sum_probs=32.6

Q ss_pred             CcccEEEECCcHHHHHHHHHHHhcCCCcEEEEccCC
Q psy14408        432 DCFDIIIVGASAAGCVLANRLSEVSSLKVLLIEAGG  467 (720)
Q Consensus       432 ~eyDVVIIGSGiAGLvAA~~LAea~G~KVLVLEKG~  467 (720)
                      .++||||||||++|++||++|++. |++|+||||+.
T Consensus         3 ~~~dvvIIGgG~aGl~aA~~l~~~-g~~V~lie~~~   37 (467)
T 1zk7_A            3 PPVQVAVIGSGGAAMAAALKAVEQ-GAQVTLIERGT   37 (467)
T ss_dssp             CCCEEEEECCSHHHHHHHHHHHHT-TCEEEEEESSS
T ss_pred             CcCCEEEECCCHHHHHHHHHHHHC-CCEEEEEeCCC
Confidence            357999999999999999999999 99999999983

>1ebd_A E3BD, dihydrolipoamide dehydrogenase; redox-active center, glycolysis, oxidoreductase; HET: FAD; 2.60A {Geobacillus stearothermophilus} SCOP: c.3.1.5 c.3.1.5 d.87.1.1

Probab=97.72  E-value=1.8e-05  Score=86.74  Aligned_cols=33  Identities=33%  Similarity=0.528  Sum_probs=31.9

Q ss_pred             cccEEEECCcHHHHHHHHHHHhcCCCcEEEEccC
Q psy14408        433 CFDIIIVGASAAGCVLANRLSEVSSLKVLLIEAG  466 (720)
Q Consensus       433 eyDVVIIGSGiAGLvAA~~LAea~G~KVLVLEKG  466 (720)
                      ++||||||||.+|++||.+|++. |++|+||||+
T Consensus         3 ~~dvvIIGgG~aGl~aA~~l~~~-g~~V~lie~~   35 (455)
T 1ebd_A            3 ETETLVVGAGPGGYVAAIRAAQL-GQKVTIVEKG   35 (455)
T ss_dssp             ECSEEEECCSHHHHHHHHHHHHT-TCCEEEEESS
T ss_pred             cCCEEEECCCHHHHHHHHHHHhC-CCeEEEEECC
Confidence            57999999999999999999999 9999999997

>1ges_A Glutathione reductase; oxidoreductase(flavoenzyme); HET: FAD; 1.74A {Escherichia coli} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1geu_A* 1ger_A* 1get_A*

Probab=97.72  E-value=1.7e-05  Score=87.10  Aligned_cols=34  Identities=32%  Similarity=0.434  Sum_probs=32.3

Q ss_pred             cccEEEECCcHHHHHHHHHHHhcCCCcEEEEccCC
Q psy14408        433 CFDIIIVGASAAGCVLANRLSEVSSLKVLLIEAGG  467 (720)
Q Consensus       433 eyDVVIIGSGiAGLvAA~~LAea~G~KVLVLEKG~  467 (720)
                      ++||||||||.+|++||++|++. |++|+||||+.
T Consensus         4 ~~dvvIIGgG~aGl~aA~~l~~~-g~~V~liE~~~   37 (450)
T 1ges_A            4 HYDYIAIGGGSGGIASINRAAMY-GQKCALIEAKE   37 (450)
T ss_dssp             EEEEEEECCSHHHHHHHHHHHTT-TCCEEEEESSC
T ss_pred             cCCEEEECCCHHHHHHHHHHHhC-CCeEEEEcCCC
Confidence            58999999999999999999998 99999999983

>2r9z_A Glutathione amide reductase; NAD, FAD, substrate specificity, oxidoreductase; HET: FAD; 2.10A {Marichromatium gracile} PDB: 2rab_A*

Probab=97.71  E-value=1.9e-05  Score=87.11  Aligned_cols=34  Identities=29%  Similarity=0.559  Sum_probs=32.3

Q ss_pred             cccEEEECCcHHHHHHHHHHHhcCCCcEEEEccCC
Q psy14408        433 CFDIIIVGASAAGCVLANRLSEVSSLKVLLIEAGG  467 (720)
Q Consensus       433 eyDVVIIGSGiAGLvAA~~LAea~G~KVLVLEKG~  467 (720)
                      ++||||||||.+|++||++|++. |++|+|||++.
T Consensus         4 ~~dVvIIGgG~aGl~aA~~l~~~-g~~V~liE~~~   37 (463)
T 2r9z_A            4 HFDLIAIGGGSGGLAVAEKAAAF-GKRVALIESKA   37 (463)
T ss_dssp             CEEEEEECCSHHHHHHHHHHHHT-TCCEEEEESSC
T ss_pred             cCcEEEECCCHHHHHHHHHHHhC-CCcEEEEcCCC
Confidence            58999999999999999999998 99999999983

>3c4a_A Probable tryptophan hydroxylase VIOD; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; HET: FAD; 2.30A {Chromobacterium violaceum atcc 12472}

Probab=97.71  E-value=2.1e-05  Score=83.90  Aligned_cols=35  Identities=26%  Similarity=0.528  Sum_probs=32.1

Q ss_pred             cEEEECCcHHHHHHHHHHHhc-CCCcEEEEccCCCC
Q psy14408        435 DIIIVGASAAGCVLANRLSEV-SSLKVLLIEAGGDT  469 (720)
Q Consensus       435 DVVIIGSGiAGLvAA~~LAea-~G~KVLVLEKG~~~  469 (720)
                      ||||||||++||++|+.|+++ +|++|+||||....
T Consensus         2 dV~IVGaG~aGl~~A~~L~~~~~G~~V~v~E~~~~~   37 (381)
T 3c4a_A            2 KILVIGAGPAGLVFASQLKQARPLWAIDIVEKNDEQ   37 (381)
T ss_dssp             EEEEECCSHHHHHHHHHHHHHCTTSEEEEECSSCTT
T ss_pred             eEEEECCCHHHHHHHHHHHhcCCCCCEEEEECCCCC
Confidence            899999999999999999986 48999999998654

>1fec_A Trypanothione reductase; redox-active center, oxidoreductase, flavoprotein, FAD, NADP; HET: FAD; 1.70A {Crithidia fasciculata} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1fea_A* 1feb_A* 2tpr_A* 1tyt_A* 1typ_A* 2jk6_A* 2w0h_A* 2yau_A* 2x50_A* 2ve2_A*

Probab=97.69  E-value=2.4e-05  Score=87.01  Aligned_cols=65  Identities=23%  Similarity=0.302  Sum_probs=44.3

Q ss_pred             HHHHHHHhcCCCeEEEcCeEEEEEEEccCCcEEEEEEEecCCcEEEEEcCcEEEEccCCcchHH-H-HHHcCCC
Q psy14408        638 AYLTPIAGKRTNLYVLKRSKVTKVIINDQNVATGVEYVNSKGETVRVTANKEVILTAGAIANAQ-L-LLLSGIG  709 (720)
Q Consensus       638 a~L~~Aa~e~aGVkIi~gt~VtkIl~e~gGrAtGV~v~dt~G~e~tIkAkK~VVVAAGa~~Sp~-L-Ll~SGIg  709 (720)
                      ..+.+.+ ++.|++|+++++|++|..+ ++....|++.  +|+  ++.++ .||+|+|...... | |...|+.
T Consensus       235 ~~l~~~l-~~~GV~i~~~~~v~~i~~~-~~~~~~v~~~--~G~--~i~~D-~vv~a~G~~p~~~~L~l~~~gl~  301 (490)
T 1fec_A          235 KQLTEQL-RANGINVRTHENPAKVTKN-ADGTRHVVFE--SGA--EADYD-VVMLAIGRVPRSQTLQLEKAGVE  301 (490)
T ss_dssp             HHHHHHH-HHTTEEEEETCCEEEEEEC-TTSCEEEEET--TSC--EEEES-EEEECSCEEESCTTSCGGGGTCC
T ss_pred             HHHHHHH-HhCCCEEEeCCEEEEEEEc-CCCEEEEEEC--CCc--EEEcC-EEEEccCCCcCccccCchhcCcc
Confidence            3444544 4789999999999999876 4333345443  364  68898 5999999765544 3 5566664

>2vdc_G Glutamate synthase [NADPH] small chain; oxidoreductase, amidotransferase, ammonia assimilation, iron, zymogen; HET: OMT FMN AKG FAD; 9.50A {Azospirillum brasilense}

Probab=97.68  E-value=3e-05  Score=86.01  Aligned_cols=38  Identities=18%  Similarity=0.204  Sum_probs=34.6

Q ss_pred             CcccEEEECCcHHHHHHHHHHHhcCCCcEEEEccCCCCC
Q psy14408        432 DCFDIIIVGASAAGCVLANRLSEVSSLKVLLIEAGGDTP  470 (720)
Q Consensus       432 ~eyDVVIIGSGiAGLvAA~~LAea~G~KVLVLEKG~~~~  470 (720)
                      ...||+|||||++|++||++|+++ |++|+|+|++...+
T Consensus       121 ~~~~V~IIGgGpAGl~aA~~L~~~-G~~V~v~e~~~~~G  158 (456)
T 2vdc_G          121 LGLSVGVIGAGPAGLAAAEELRAK-GYEVHVYDRYDRMG  158 (456)
T ss_dssp             CCCCEEEECCSHHHHHHHHHHHHH-TCCEEEECSSSSCS
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHC-CCeEEEEeccCCCC
Confidence            356999999999999999999999 99999999987654

>1lvl_A Dihydrolipoamide dehydrogenase; oxidoreductase; HET: FAD NAD; 2.45A {Pseudomonas putida} SCOP: c.3.1.5 c.3.1.5 d.87.1.1

Probab=97.67  E-value=2.4e-05  Score=86.16  Aligned_cols=34  Identities=24%  Similarity=0.418  Sum_probs=32.1

Q ss_pred             CcccEEEECCcHHHHHHHHHHHhcCCCcEEEEccC
Q psy14408        432 DCFDIIIVGASAAGCVLANRLSEVSSLKVLLIEAG  466 (720)
Q Consensus       432 ~eyDVVIIGSGiAGLvAA~~LAea~G~KVLVLEKG  466 (720)
                      .++||||||||.+|++||.+|++. |++|+|||++
T Consensus         4 ~~~dvvIIG~G~aGl~aA~~l~~~-g~~V~lie~~   37 (458)
T 1lvl_A            4 IQTTLLIIGGGPGGYVAAIRAGQL-GIPTVLVEGQ   37 (458)
T ss_dssp             EECSEEEECCSHHHHHHHHHHHHH-TCCEEEECSS
T ss_pred             CcCCEEEECCCHHHHHHHHHHHHC-CCEEEEEccC
Confidence            458999999999999999999999 9999999995

>2eq6_A Pyruvate dehydrogenase complex, dihydrolipoamide dehydrogenase E3 component; oxidoreductase, homodimer, structural genomics, NPPSFA; HET: FAD; 1.60A {Thermus thermophilus} PDB: 2eq8_A* 2eq9_A*

Probab=97.66  E-value=2.3e-05  Score=86.34  Aligned_cols=68  Identities=18%  Similarity=0.215  Sum_probs=46.1

Q ss_pred             HHHHHHHhcCCCeEEEcCeEEEEEEEccCCcEEEEEEEe-cCCcEEEEEcCcEEEEccCCcchHHH--HHHcCCC
Q psy14408        638 AYLTPIAGKRTNLYVLKRSKVTKVIINDQNVATGVEYVN-SKGETVRVTANKEVILTAGAIANAQL--LLLSGIG  709 (720)
Q Consensus       638 a~L~~Aa~e~aGVkIi~gt~VtkIl~e~gGrAtGV~v~d-t~G~e~tIkAkK~VVVAAGa~~Sp~L--Ll~SGIg  709 (720)
                      ..+.+.+ ++.|++|+++++|++|..+ ++++ .|++.+ ..|++.++.++ .||+|+|......+  |...|+.
T Consensus       214 ~~l~~~l-~~~gV~i~~~~~v~~i~~~-~~~~-~v~~~~~~~g~~~~i~~D-~vv~a~G~~p~~~~l~l~~~g~~  284 (464)
T 2eq6_A          214 ALLRRAL-EKEGIRVRTKTKAVGYEKK-KDGL-HVRLEPAEGGEGEEVVVD-KVLVAVGRKPRTEGLGLEKAGVK  284 (464)
T ss_dssp             HHHHHHH-HHTTCEEECSEEEEEEEEE-TTEE-EEEEEETTCCSCEEEEES-EEEECSCEEESCTTSSHHHHTCC
T ss_pred             HHHHHHH-HhcCCEEEcCCEEEEEEEe-CCEE-EEEEeecCCCceeEEEcC-EEEECCCcccCCCCCChhhcCce
Confidence            3455555 4789999999999999876 4433 355542 11655578998 59999997655444  4566664

>3cty_A Thioredoxin reductase; FAD, oxidoreductase, flavin, flavoprotein; HET: FAD; 2.35A {Thermoplasma acidophilum}

Probab=97.61  E-value=0.0002  Score=73.75  Aligned_cols=33  Identities=24%  Similarity=0.327  Sum_probs=30.5

Q ss_pred             ccEEEECCcHHHHHHHHHHHhcCCCcEEEEccCC
Q psy14408        434 FDIIIVGASAAGCVLANRLSEVSSLKVLLIEAGG  467 (720)
Q Consensus       434 yDVVIIGSGiAGLvAA~~LAea~G~KVLVLEKG~  467 (720)
                      -.|+|||+|..|+-+|..|++. |.+|+|++++.
T Consensus       156 ~~v~viG~G~~g~e~a~~l~~~-g~~V~~i~~~~  188 (319)
T 3cty_A          156 KRVVTIGGGNSGAIAAISMSEY-VKNVTIIEYMP  188 (319)
T ss_dssp             SEEEEECCSHHHHHHHHHHTTT-BSEEEEECSSS
T ss_pred             CeEEEECCCHHHHHHHHHHHhh-CCcEEEEEcCC
Confidence            3799999999999999999999 99999999873

>3g5s_A Methylenetetrahydrofolate--tRNA-(uracil-5-)- methyltransferase TRMFO; tRNA methyltransferase FAD folate, FAD, flavoprotein; HET: MSE FAD GSH; 1.05A {Thermus thermophilus} PDB: 3g5q_A* 3g5r_A*

Probab=97.60  E-value=6.2e-05  Score=82.94  Aligned_cols=35  Identities=29%  Similarity=0.267  Sum_probs=32.4

Q ss_pred             ccEEEECCcHHHHHHHHHHHhcCCCcEEEEccCCCC
Q psy14408        434 FDIIIVGASAAGCVLANRLSEVSSLKVLLIEAGGDT  469 (720)
Q Consensus       434 yDVVIIGSGiAGLvAA~~LAea~G~KVLVLEKG~~~  469 (720)
                      .||||||||.+|+.||+.||++ |++|+|+|+....
T Consensus         2 ~dViVIGgG~AG~~AA~~la~~-G~~V~liE~~~~~   36 (443)
T 3g5s_A            2 ERVNVVGAGLAGSEAAWTLLRL-GVPVRLFEMRPKR   36 (443)
T ss_dssp             CCEEEECCSHHHHHHHHHHHHT-TCCEEEECCTTTS
T ss_pred             CCEEEECchHHHHHHHHHHHHC-CCcEEEEeccCCc
Confidence            4999999999999999999999 9999999997643

>2x8g_A Thioredoxin glutathione reductase; redox-active center, detoxification pathway, oxidoreductase, flavoprotein; HET: FAD PG4; 1.90A {Schistosoma mansoni} PDB: 2x8c_A* 2x8h_A* 2x99_A* 3h4k_A* 2v6o_A*

Probab=97.55  E-value=4.5e-05  Score=86.70  Aligned_cols=35  Identities=14%  Similarity=0.321  Sum_probs=32.6

Q ss_pred             CCcccEEEECCcHHHHHHHHHHHhcCCCcEEEEccC
Q psy14408        431 GDCFDIIIVGASAAGCVLANRLSEVSSLKVLLIEAG  466 (720)
Q Consensus       431 d~eyDVVIIGSGiAGLvAA~~LAea~G~KVLVLEKG  466 (720)
                      ...+||||||||.+|++||.+|++. |++|+|+|+.
T Consensus       105 ~~~~dvvVIG~GpAGl~aA~~l~~~-g~~v~liE~~  139 (598)
T 2x8g_A          105 KYDYDLIVIGGGSGGLAAGKEAAKY-GAKTAVLDYV  139 (598)
T ss_dssp             SSSEEEEEECCSHHHHHHHHHHHHT-TCCEEEECCC
T ss_pred             cccccEEEECCCccHHHHHHHHHhC-CCeEEEEecc
Confidence            4568999999999999999999999 9999999984

>2z3y_A Lysine-specific histone demethylase 1; chromatin, nucleosome, transcription, LSD1, alternative splicing, chromatin regulator, coiled coil; HET: F2N; 2.25A {Homo sapiens} SCOP: a.4.1.18 c.3.1.2 d.16.1.5 PDB: 2ejr_A* 2z5u_A* 3abt_A* 3abu_A* 2y48_A* 2v1d_A* 2h94_A* 2iw5_A* 2uxn_A* 2uxx_A* 2hko_A* 2dw4_A* 2x0l_A* 2l3d_A

Probab=97.54  E-value=5.7e-05  Score=87.42  Aligned_cols=40  Identities=25%  Similarity=0.349  Sum_probs=35.8

Q ss_pred             CCcccEEEECCcHHHHHHHHHHHhcCCCcEEEEccCCCCCC
Q psy14408        431 GDCFDIIIVGASAAGCVLANRLSEVSSLKVLLIEAGGDTPI  471 (720)
Q Consensus       431 d~eyDVVIIGSGiAGLvAA~~LAea~G~KVLVLEKG~~~~~  471 (720)
                      ....||+|||||++||+||++|+++ |++|+|+|+....++
T Consensus       105 ~~~~~v~viG~G~~gl~~a~~l~~~-g~~v~~~e~~~~~gg  144 (662)
T 2z3y_A          105 KKTGKVIIIGSGVSGLAAARQLQSF-GMDVTLLEARDRVGG  144 (662)
T ss_dssp             SCCCEEEEECCBHHHHHHHHHHHHT-TCEEEEECSSSSSBT
T ss_pred             cCCCeEEEECcCHHHHHHHHHHHHC-CCeEEEEecCCCCCC
Confidence            3457999999999999999999999 999999999876644

>2wpf_A Trypanothione reductase; oxidoreductase, trypanosomiasis, sleeping sickness, flavoPro redox-active center; HET: FAD WPF; 1.90A {Trypanosoma brucei} PDB: 2wov_A* 2wow_A* 2wp5_A* 2wp6_A* 2wpc_A* 2wpe_A* 2woi_A* 2wba_A* 1nda_A* 1gxf_A* 1bzl_A* 1aog_A*

Probab=97.53  E-value=4.3e-05  Score=85.17  Aligned_cols=65  Identities=18%  Similarity=0.307  Sum_probs=44.5

Q ss_pred             HHHHHHHhcCCCeEEEcCeEEEEEEEccCCcEEEEEEEecCCcEEEEEcCcEEEEccCCcchHH-H-HHHcCCC
Q psy14408        638 AYLTPIAGKRTNLYVLKRSKVTKVIINDQNVATGVEYVNSKGETVRVTANKEVILTAGAIANAQ-L-LLLSGIG  709 (720)
Q Consensus       638 a~L~~Aa~e~aGVkIi~gt~VtkIl~e~gGrAtGV~v~dt~G~e~tIkAkK~VVVAAGa~~Sp~-L-Ll~SGIg  709 (720)
                      ..+.+.+ ++.|++|+++++|++|..+ ++....|++.  +|+  ++.++ .||+|+|...... | |..+|+.
T Consensus       239 ~~l~~~l-~~~GV~i~~~~~v~~i~~~-~~~~~~v~~~--~G~--~i~~D-~vv~a~G~~p~~~~L~l~~~gl~  305 (495)
T 2wpf_A          239 EEVTKQL-TANGIEIMTNENPAKVSLN-TDGSKHVTFE--SGK--TLDVD-VVMMAIGRIPRTNDLQLGNVGVK  305 (495)
T ss_dssp             HHHHHHH-HHTTCEEEESCCEEEEEEC-TTSCEEEEET--TSC--EEEES-EEEECSCEEECCGGGTGGGTTCC
T ss_pred             HHHHHHH-HhCCCEEEeCCEEEEEEEc-CCceEEEEEC--CCc--EEEcC-EEEECCCCcccccccchhhcCcc
Confidence            3444555 5789999999999999876 4333445543  364  68898 5999999765554 3 4556664

>2eq6_A Pyruvate dehydrogenase complex, dihydrolipoamide dehydrogenase E3 component; oxidoreductase, homodimer, structural genomics, NPPSFA; HET: FAD; 1.60A {Thermus thermophilus} PDB: 2eq8_A* 2eq9_A*

Probab=97.52  E-value=0.00033  Score=77.21  Aligned_cols=32  Identities=25%  Similarity=0.384  Sum_probs=30.6

Q ss_pred             cEEEECCcHHHHHHHHHHHhcCCCcEEEEccCC
Q psy14408        435 DIIIVGASAAGCVLANRLSEVSSLKVLLIEAGG  467 (720)
Q Consensus       435 DVVIIGSGiAGLvAA~~LAea~G~KVLVLEKG~  467 (720)
                      .|+|||||..|+-+|..|++. |.+|+|+|++.
T Consensus       171 ~vvViGgG~~g~e~A~~l~~~-g~~Vtlv~~~~  202 (464)
T 2eq6_A          171 RLLVIGGGAVGLELGQVYRRL-GAEVTLIEYMP  202 (464)
T ss_dssp             EEEEECCSHHHHHHHHHHHHT-TCEEEEECSSS
T ss_pred             EEEEECCCHHHHHHHHHHHHC-CCeEEEEEcCC
Confidence            899999999999999999999 99999999974

>1xdi_A RV3303C-LPDA; reductase, FAD, NAD, NADP, unkno function; HET: FAD; 2.81A {Mycobacterium tuberculosis} SCOP: c.3.1.5 d.87.1.1

Probab=97.52  E-value=4.2e-05  Score=85.04  Aligned_cols=64  Identities=17%  Similarity=0.208  Sum_probs=43.9

Q ss_pred             HHHHHHHhcCCCeEEEcCeEEEEEEEccCCcEEEEEEEecCCcEEEEEcCcEEEEccCCcchHHH--HHHcCCC
Q psy14408        638 AYLTPIAGKRTNLYVLKRSKVTKVIINDQNVATGVEYVNSKGETVRVTANKEVILTAGAIANAQL--LLLSGIG  709 (720)
Q Consensus       638 a~L~~Aa~e~aGVkIi~gt~VtkIl~e~gGrAtGV~v~dt~G~e~tIkAkK~VVVAAGa~~Sp~L--Ll~SGIg  709 (720)
                      ..+.+.+ ++.|++|+++++|++|..+ ++++   .+...+|+  ++.++ .||+|+|......+  |...|+.
T Consensus       227 ~~l~~~l-~~~GV~i~~~~~V~~i~~~-~~~v---~v~~~~g~--~i~aD-~Vv~a~G~~p~~~~l~l~~~gl~  292 (499)
T 1xdi_A          227 LVLEESF-AERGVRLFKNARAASVTRT-GAGV---LVTMTDGR--TVEGS-HALMTIGSVPNTSGLGLERVGIQ  292 (499)
T ss_dssp             HHHHHHH-HHTTCEEETTCCEEEEEEC-SSSE---EEEETTSC--EEEES-EEEECCCEEECCSSSCTTTTTCC
T ss_pred             HHHHHHH-HHCCCEEEeCCEEEEEEEe-CCEE---EEEECCCc--EEEcC-EEEECCCCCcCCCcCCchhcCce
Confidence            3455555 5789999999999999876 4443   33333453  68898 59999997655545  4555654

>1hyu_A AHPF, alkyl hydroperoxide reductase subunit F; thiol-thiolate hydrogen bond, nucleotide binding fold, thior reductase, thioredoxin; HET: FAD; 2.00A {Salmonella typhimurium} SCOP: c.3.1.5 c.3.1.5 c.47.1.2 c.47.1.2 PDB: 1zyn_A 1zyp_A

Probab=97.49  E-value=6e-05  Score=84.64  Aligned_cols=55  Identities=20%  Similarity=0.355  Sum_probs=44.5

Q ss_pred             CCeEEEcCeEEEEEEEccCCcEEEEEEEec-CCcEEEEEcCcEEEEccCCcchHHHHH
Q psy14408        648 TNLYVLKRSKVTKVIINDQNVATGVEYVNS-KGETVRVTANKEVILTAGAIANAQLLL  704 (720)
Q Consensus       648 aGVkIi~gt~VtkIl~e~gGrAtGV~v~dt-~G~e~tIkAkK~VVVAAGa~~Sp~LLl  704 (720)
                      .|++|+.++.|++|..+ ++++.+|++.+. +|++.++.++ .||+|+|......+|.
T Consensus       404 ~gV~v~~~~~v~~i~~~-~~~v~~v~~~~~~~g~~~~i~~D-~vi~a~G~~pn~~~l~  459 (521)
T 1hyu_A          404 KNVDIILNAQTTEVKGD-GSKVVGLEYRDRVSGDIHSVALA-GIFVQIGLLPNTHWLE  459 (521)
T ss_dssp             TTEEEECSEEEEEEEEC-SSSEEEEEEEETTTCCEEEEECS-EEEECCCEEESCGGGT
T ss_pred             CCcEEEeCCEEEEEEcC-CCcEEEEEEEeCCCCceEEEEcC-EEEECcCCCCCchHHh
Confidence            69999999999999876 778889998863 5766789998 5999999765545543

>1fl2_A Alkyl hydroperoxide reductase subunit F; reactive oxygen, FAD, disulphi oxidoreductase, oxidoreductase; HET: FAD; 1.90A {Escherichia coli} SCOP: c.3.1.5 c.3.1.5

Probab=97.47  E-value=0.00084  Score=68.49  Aligned_cols=32  Identities=22%  Similarity=0.341  Sum_probs=30.3

Q ss_pred             cEEEECCcHHHHHHHHHHHhcCCCcEEEEccCC
Q psy14408        435 DIIIVGASAAGCVLANRLSEVSSLKVLLIEAGG  467 (720)
Q Consensus       435 DVVIIGSGiAGLvAA~~LAea~G~KVLVLEKG~  467 (720)
                      .|+|||+|..|+-+|..|++. |.+|+|+++..
T Consensus       146 ~v~VvG~G~~g~e~A~~l~~~-g~~Vtlv~~~~  177 (310)
T 1fl2_A          146 RVAVIGGGNSGVEAAIDLAGI-VEHVTLLEFAP  177 (310)
T ss_dssp             EEEEECCSHHHHHHHHHHHTT-BSEEEEECSSS
T ss_pred             EEEEECCCHHHHHHHHHHHHh-CCEEEEEEeCc
Confidence            799999999999999999999 99999999874

>2bc0_A NADH oxidase; flavoprotein, pyridine nucleotide disulfide oxidoreductase, C(4A)-peroxyflavin, crystallography, conformational dynamics; HET: FAD; 2.00A {Streptococcus pyogenes} PDB: 2bcp_A* 2bc1_A*

Probab=97.46  E-value=6.7e-05  Score=83.26  Aligned_cols=37  Identities=16%  Similarity=0.249  Sum_probs=33.6

Q ss_pred             CcccEEEECCcHHHHHHHHHHHhcCC---CcEEEEccCCCC
Q psy14408        432 DCFDIIIVGASAAGCVLANRLSEVSS---LKVLLIEAGGDT  469 (720)
Q Consensus       432 ~eyDVVIIGSGiAGLvAA~~LAea~G---~KVLVLEKG~~~  469 (720)
                      +++||||||||.+|++||.+|++. |   ++|+|||++...
T Consensus        34 m~~dvvIIGaG~aGl~aA~~l~~~-g~~~~~V~lie~~~~~   73 (490)
T 2bc0_A           34 WGSKIVVVGANHAGTACIKTMLTN-YGDANEIVVFDQNSNI   73 (490)
T ss_dssp             CCCEEEEECCSHHHHHHHHHHHHH-HGGGSEEEEECSSSCC
T ss_pred             cCCcEEEECCCHHHHHHHHHHHhc-CCCCCeEEEEECCCCC
Confidence            358999999999999999999998 7   999999998653

>1v59_A Dihydrolipoamide dehydrogenase; 2-oxoacid dehydroganese complex, pyruvate dehydrogenase complex; HET: FAD NAD; 2.20A {Saccharomyces cerevisiae} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1jeh_A*

Probab=97.45  E-value=0.00042  Score=76.23  Aligned_cols=32  Identities=22%  Similarity=0.334  Sum_probs=30.7

Q ss_pred             cEEEECCcHHHHHHHHHHHhcCCCcEEEEccCC
Q psy14408        435 DIIIVGASAAGCVLANRLSEVSSLKVLLIEAGG  467 (720)
Q Consensus       435 DVVIIGSGiAGLvAA~~LAea~G~KVLVLEKG~  467 (720)
                      .|+|||||..|+-+|..|++. |.+|+|||++.
T Consensus       185 ~vvViGgG~~g~e~A~~l~~~-g~~Vtlv~~~~  216 (478)
T 1v59_A          185 RLTIIGGGIIGLEMGSVYSRL-GSKVTVVEFQP  216 (478)
T ss_dssp             EEEEECCSHHHHHHHHHHHHT-TCEEEEECSSS
T ss_pred             eEEEECCCHHHHHHHHHHHHc-CCEEEEEEeCC
Confidence            899999999999999999999 99999999984

>1o94_A Tmadh, trimethylamine dehydrogenase; electron transport, protein complex; HET: FMN ADP AMP; 2.0A {Methylophilus methylotrophus} SCOP: c.1.4.1 c.3.1.1 c.4.1.1 PDB: 1djn_A* 1o95_A* 2tmd_A* 1djq_A*

Probab=97.45  E-value=8.6e-05  Score=86.93  Aligned_cols=39  Identities=26%  Similarity=0.268  Sum_probs=35.1

Q ss_pred             CcccEEEECCcHHHHHHHHHHHhcCCCcEEEEccCCCCCC
Q psy14408        432 DCFDIIIVGASAAGCVLANRLSEVSSLKVLLIEAGGDTPI  471 (720)
Q Consensus       432 ~eyDVVIIGSGiAGLvAA~~LAea~G~KVLVLEKG~~~~~  471 (720)
                      ...||||||||++|++||++|+++ |++|+|+|+....++
T Consensus       388 ~~~~VvIIGgGpAGl~aA~~L~~~-G~~Vtlie~~~~~GG  426 (729)
T 1o94_A          388 NKDSVLIVGAGPSGSEAARVLMES-GYTVHLTDTAEKIGG  426 (729)
T ss_dssp             SCCEEEEECCSHHHHHHHHHHHHT-TCEEEEECSSSSTTT
T ss_pred             CCceEEEECCCHHHHHHHHHHHHC-CCeEEEEeCCCCcCC
Confidence            457999999999999999999999 999999999876543

>2xag_A Lysine-specific histone demethylase 1; amine oxidase, chromatin regulator, histone inhibitor binding, methylation, nucleosome core, oxidoreductase; HET: FAD TCF; 3.10A {Homo sapiens} PDB: 2xaf_A* 2xah_A* 2xaj_A* 2xaq_A* 2xas_A* 2com_A

Probab=97.44  E-value=9.8e-05  Score=88.20  Aligned_cols=39  Identities=26%  Similarity=0.367  Sum_probs=35.4

Q ss_pred             CcccEEEECCcHHHHHHHHHHHhcCCCcEEEEccCCCCCC
Q psy14408        432 DCFDIIIVGASAAGCVLANRLSEVSSLKVLLIEAGGDTPI  471 (720)
Q Consensus       432 ~eyDVVIIGSGiAGLvAA~~LAea~G~KVLVLEKG~~~~~  471 (720)
                      ...||+|||||++||+||++|+++ |++|+|||+....++
T Consensus       277 ~~~~v~viG~G~aGl~~A~~l~~~-g~~v~v~E~~~~~GG  315 (852)
T 2xag_A          277 KTGKVIIIGSGVSGLAAARQLQSF-GMDVTLLEARDRVGG  315 (852)
T ss_dssp             CCCEEEEECCSHHHHHHHHHHHHT-TCEEEEECSSSSSCT
T ss_pred             CCCeEEEECCCHHHHHHHHHHHHC-CCcEEEEEecCcCCC
Confidence            456999999999999999999999 999999999877654

>2q0l_A TRXR, thioredoxin reductase; bacterial thiredoxin reductase, NADP+ B reduced izoalloxazine bending, oxidoreductase; HET: FAD NAP; 1.45A {Helicobacter pylori} PDB: 2q0k_A* 3ish_A*

Probab=97.44  E-value=0.00099  Score=68.00  Aligned_cols=33  Identities=21%  Similarity=0.290  Sum_probs=30.8

Q ss_pred             ccEEEECCcHHHHHHHHHHHhcCCCcEEEEccCC
Q psy14408        434 FDIIIVGASAAGCVLANRLSEVSSLKVLLIEAGG  467 (720)
Q Consensus       434 yDVVIIGSGiAGLvAA~~LAea~G~KVLVLEKG~  467 (720)
                      -.|+|||+|..|+-+|..|++. |.+|+|++++.
T Consensus       144 ~~v~VvG~G~~g~e~A~~l~~~-g~~Vtlv~~~~  176 (311)
T 2q0l_A          144 KEVAVLGGGDTAVEEAIYLANI-CKKVYLIHRRD  176 (311)
T ss_dssp             SEEEEECCSHHHHHHHHHHHTT-SSEEEEECSSS
T ss_pred             CEEEEECCCHHHHHHHHHHHhc-CCEEEEEeeCC
Confidence            4899999999999999999999 99999999873

>1ps9_A 2,4-dienoyl-COA reductase; iron-sulfur, TIM barrel, flavodoxin, flavin, electron transfer, hydride transfer, oxidoreductase; HET: FAD FMN NAP MDE; 2.20A {Escherichia coli} SCOP: c.1.4.1 c.3.1.1 c.4.1.1

Probab=97.42  E-value=9.3e-05  Score=85.58  Aligned_cols=39  Identities=23%  Similarity=0.256  Sum_probs=35.0

Q ss_pred             CcccEEEECCcHHHHHHHHHHHhcCCCcEEEEccCCCCCC
Q psy14408        432 DCFDIIIVGASAAGCVLANRLSEVSSLKVLLIEAGGDTPI  471 (720)
Q Consensus       432 ~eyDVVIIGSGiAGLvAA~~LAea~G~KVLVLEKG~~~~~  471 (720)
                      ..+||||||||.+|+.||..|+++ |++|+|+|++...++
T Consensus       372 ~~~~vvIIGgG~AGl~aA~~l~~~-g~~V~lie~~~~~gg  410 (671)
T 1ps9_A          372 QKKNLAVVGAGPAGLAFAINAAAR-GHQVTLFDAHSEIGG  410 (671)
T ss_dssp             SCCEEEEECCSHHHHHHHHHHHTT-TCEEEEEESSSSSCT
T ss_pred             CCCeEEEECCCHHHHHHHHHHHhC-CCeEEEEeCCCCCCC
Confidence            357999999999999999999999 999999999876543

>3h0g_A DNA-directed RNA polymerase II subunit RPB1; transcription, multi-protein complex, DNA- binding, magnesium; 3.65A {Schizosaccharomyces pombe}

Probab=97.40  E-value=2.3e-05  Score=99.00  Aligned_cols=6  Identities=50%  Similarity=0.960  Sum_probs=0.0

Q ss_pred             CCCCCC
Q psy14408         71 NPFSPI   76 (720)
Q Consensus        71 ~~~~~~   76 (720)
                      .||+|.
T Consensus      1541 sp~~~~ 1546 (1752)
T 3h0g_A         1541 SPFSSA 1546 (1752)
T ss_dssp             ------
T ss_pred             CCCCCC
Confidence            355554

>1xhc_A NADH oxidase /nitrite reductase; southe collaboratory for structural genomics, secsg, hyperthermoph protein structure initiative, PSI; HET: FAD; 2.35A {Pyrococcus furiosus} SCOP: c.3.1.5 c.3.1.5 d.87.1.1

Probab=97.35  E-value=9.7e-05  Score=79.12  Aligned_cols=59  Identities=20%  Similarity=0.261  Sum_probs=43.1

Q ss_pred             HHHHHHHhcCCCeEEEcCeEEEEEEEccCCcEEEEEEEecCCcEEEEEcCcEEEEccCCcchHHHHHHcCCC
Q psy14408        638 AYLTPIAGKRTNLYVLKRSKVTKVIINDQNVATGVEYVNSKGETVRVTANKEVILTAGAIANAQLLLLSGIG  709 (720)
Q Consensus       638 a~L~~Aa~e~aGVkIi~gt~VtkIl~e~gGrAtGV~v~dt~G~e~tIkAkK~VVVAAGa~~Sp~LLl~SGIg  709 (720)
                      .++.+.+ ++.|++|+++++|++|. .     .+|++.+  | +  +.++ .||+|+|......+|..+|+.
T Consensus       187 ~~l~~~l-~~~gV~i~~~~~v~~i~-~-----~~v~~~~--g-~--i~~D-~vi~a~G~~p~~~ll~~~gl~  245 (367)
T 1xhc_A          187 NMIKDML-EETGVKFFLNSELLEAN-E-----EGVLTNS--G-F--IEGK-VKICAIGIVPNVDLARRSGIH  245 (367)
T ss_dssp             HHHHHHH-HHTTEEEECSCCEEEEC-S-----SEEEETT--E-E--EECS-CEEEECCEEECCHHHHHTTCC
T ss_pred             HHHHHHH-HHCCCEEEcCCEEEEEE-e-----eEEEECC--C-E--EEcC-EEEECcCCCcCHHHHHhCCCC
Confidence            3455555 57899999999999996 2     2455533  4 2  8898 499999977666688888875

>2zbw_A Thioredoxin reductase; redox protein, oxidoreductase, structural genomics, NPPSFA, project on protein structural and functional analyses; HET: FAD; 2.10A {Thermus thermophilus}

Probab=97.34  E-value=0.0013  Score=67.89  Aligned_cols=33  Identities=21%  Similarity=0.282  Sum_probs=30.7

Q ss_pred             ccEEEECCcHHHHHHHHHHHhcCCCcEEEEccCC
Q psy14408        434 FDIIIVGASAAGCVLANRLSEVSSLKVLLIEAGG  467 (720)
Q Consensus       434 yDVVIIGSGiAGLvAA~~LAea~G~KVLVLEKG~  467 (720)
                      -.|+|||+|..|+-+|..|++. |.+|+|++++.
T Consensus       153 ~~v~viG~G~~g~e~a~~l~~~-g~~V~~v~~~~  185 (335)
T 2zbw_A          153 KRVLIVGGGDSAVDWALNLLDT-ARRITLIHRRP  185 (335)
T ss_dssp             CEEEEECSSHHHHHHHHHTTTT-SSEEEEECSSS
T ss_pred             CEEEEECCCHHHHHHHHHHHhh-CCEEEEEEcCC
Confidence            3799999999999999999999 99999999874

>1vdc_A NTR, NADPH dependent thioredoxin reductase; hypothetical protein, redox-active center, oxidoreductase, D oxidoreductase; HET: FAD; 2.50A {Arabidopsis thaliana} SCOP: c.3.1.5 c.3.1.5 PDB: 2whd_A*

Probab=97.33  E-value=0.0015  Score=67.23  Aligned_cols=33  Identities=21%  Similarity=0.270  Sum_probs=30.7

Q ss_pred             ccEEEECCcHHHHHHHHHHHhcCCCcEEEEccCC
Q psy14408        434 FDIIIVGASAAGCVLANRLSEVSSLKVLLIEAGG  467 (720)
Q Consensus       434 yDVVIIGSGiAGLvAA~~LAea~G~KVLVLEKG~  467 (720)
                      -.|+|||+|..|+-+|..|++. |.+|+|+++..
T Consensus       160 ~~v~VvG~G~~g~e~A~~l~~~-g~~V~lv~~~~  192 (333)
T 1vdc_A          160 KPLAVIGGGDSAMEEANFLTKY-GSKVYIIHRRD  192 (333)
T ss_dssp             SEEEEECCSHHHHHHHHHHTTT-SSEEEEECSSS
T ss_pred             CeEEEECCChHHHHHHHHHHhc-CCeEEEEecCC
Confidence            3799999999999999999999 99999999873

>2gag_A Heterotetrameric sarcosine oxidase alpha-subunit; flavoenzyme, electron transfer, folate-ME enzyme, oxidoreductase; HET: NAD FAD FMN; 1.85A {Stenotrophomonas maltophilia} PDB: 2gah_A* 1x31_A* 1vrq_A* 3ad7_A* 3ad8_A* 3ad9_A* 3ada_A*

Probab=97.32  E-value=0.00011  Score=88.87  Aligned_cols=61  Identities=15%  Similarity=0.137  Sum_probs=46.2

Q ss_pred             cCCCeEEEcCeEEEEEEEccCCcEEEEEEEe--c---CCcEEEEEcCcEEEEccCCcchHHHHHHcC
Q psy14408        646 KRTNLYVLKRSKVTKVIINDQNVATGVEYVN--S---KGETVRVTANKEVILTAGAIANAQLLLLSG  707 (720)
Q Consensus       646 e~aGVkIi~gt~VtkIl~e~gGrAtGV~v~d--t---~G~e~tIkAkK~VVVAAGa~~Sp~LLl~SG  707 (720)
                      ++.|++|++++.|++|..++++++.+|++.+  .   +|+..+|.++ .||+|+|......++...|
T Consensus       327 ~~~GV~v~~~~~v~~i~~~~~~~v~~v~~~~~~~~~~~G~~~~i~~D-~Vv~a~G~~P~~~l~~~~~  392 (965)
T 2gag_A          327 VADGVQVISGSVVVDTEADENGELSAIVVAELDEARELGGTQRFEAD-VLAVAGGFNPVVHLHSQRQ  392 (965)
T ss_dssp             HHTTCCEEETEEEEEEEECTTSCEEEEEEEEECTTCCEEEEEEEECS-EEEEECCEEECCHHHHHTT
T ss_pred             HhCCeEEEeCCEeEEEeccCCCCEEEEEEEeccccCCCCceEEEEcC-EEEECCCcCcChHHHHhCC
Confidence            3789999999999999863136778888875  2   2444689998 5999999776667776655

>1ebd_A E3BD, dihydrolipoamide dehydrogenase; redox-active center, glycolysis, oxidoreductase; HET: FAD; 2.60A {Geobacillus stearothermophilus} SCOP: c.3.1.5 c.3.1.5 d.87.1.1

Probab=97.31  E-value=0.00064  Score=74.40  Aligned_cols=33  Identities=21%  Similarity=0.457  Sum_probs=30.9

Q ss_pred             ccEEEECCcHHHHHHHHHHHhcCCCcEEEEccCC
Q psy14408        434 FDIIIVGASAAGCVLANRLSEVSSLKVLLIEAGG  467 (720)
Q Consensus       434 yDVVIIGSGiAGLvAA~~LAea~G~KVLVLEKG~  467 (720)
                      -+|+|||+|..|+-+|..|++. |.+|+|+|++.
T Consensus       171 ~~vvViGgG~~g~e~A~~l~~~-g~~Vtlv~~~~  203 (455)
T 1ebd_A          171 KSLVVIGGGYIGIELGTAYANF-GTKVTILEGAG  203 (455)
T ss_dssp             SEEEEECCSHHHHHHHHHHHHT-TCEEEEEESSS
T ss_pred             CeEEEECCCHHHHHHHHHHHHc-CCcEEEEEcCC
Confidence            3899999999999999999999 99999999873

>1zmd_A Dihydrolipoyl dehydrogenase; lipoamide dehydrogenase, pyruvate dehydrogenase, alpha- ketoglutarate dehydrogenase; HET: FAD NAI; 2.08A {Homo sapiens} PDB: 1zmc_A* 2f5z_A* 1zy8_A* 3rnm_A*

Probab=97.30  E-value=0.00088  Score=73.70  Aligned_cols=61  Identities=16%  Similarity=0.154  Sum_probs=41.5

Q ss_pred             CCCeEEEcCeEEEEEEEccCCcEEEEEEEec-CCcEEEEEcCcEEEEccCCcchHHH--HHHcCCC
Q psy14408        647 RTNLYVLKRSKVTKVIINDQNVATGVEYVNS-KGETVRVTANKEVILTAGAIANAQL--LLLSGIG  709 (720)
Q Consensus       647 ~aGVkIi~gt~VtkIl~e~gGrAtGV~v~dt-~G~e~tIkAkK~VVVAAGa~~Sp~L--Ll~SGIg  709 (720)
                      +.|++|+++++|++|..+ +++...|++.+. .+...++.++ .||+|+|......+  |...|+.
T Consensus       232 ~~Gv~i~~~~~v~~i~~~-~~~~~~v~~~~~~~~~~~~i~~D-~vv~a~G~~p~~~~l~l~~~g~~  295 (474)
T 1zmd_A          232 KQGFKFKLNTKVTGATKK-SDGKIDVSIEAASGGKAEVITCD-VLLVCIGRRPFTKNLGLEELGIE  295 (474)
T ss_dssp             HTTCEEECSEEEEEEEEC-TTSCEEEEEEETTSCCCEEEEES-EEEECSCEEECCTTSSHHHHTCC
T ss_pred             HCCCEEEeCceEEEEEEc-CCceEEEEEEecCCCCceEEEcC-EEEECcCCCcCCCcCCchhcCCc
Confidence            679999999999999876 443233444321 1223478998 59999997665555  5666664

>3s5w_A L-ornithine 5-monooxygenase; class B flavin dependent N-hydroxylating monooxygenase, CLAS flavin dependent monooxygenase N-hydroxylating; HET: FAD ONH NAP; 1.90A {Pseudomonas aeruginosa} PDB: 3s61_A*

Probab=97.29  E-value=0.0042  Score=67.57  Aligned_cols=51  Identities=16%  Similarity=0.087  Sum_probs=39.2

Q ss_pred             cCCCeEEEcCeEEEEEEEccCCcEEEEEEEec-CCcEEEEEcCcEEEEccCCcch
Q psy14408        646 KRTNLYVLKRSKVTKVIINDQNVATGVEYVNS-KGETVRVTANKEVILTAGAIAN  699 (720)
Q Consensus       646 e~aGVkIi~gt~VtkIl~e~gGrAtGV~v~dt-~G~e~tIkAkK~VVVAAGa~~S  699 (720)
                      .+.|++|+.++.|++|..+ +++ ..|.+.+. +|+..++.++ .||+|+|....
T Consensus       327 ~~~~v~i~~~~~v~~v~~~-~~~-~~v~~~~~~~g~~~~~~~D-~Vv~AtG~~p~  378 (463)
T 3s5w_A          327 GIPRHAFRCMTTVERATAT-AQG-IELALRDAGSGELSVETYD-AVILATGYERQ  378 (463)
T ss_dssp             CCCCSEEETTEEEEEEEEE-TTE-EEEEEEETTTCCEEEEEES-EEEECCCEECC
T ss_pred             CCCCeEEEeCCEEEEEEec-CCE-EEEEEEEcCCCCeEEEECC-EEEEeeCCCCC
Confidence            3579999999999999876 443 45666654 5777789998 69999997654

>2hqm_A GR, grase, glutathione reductase; glutathione reductase complexed with FAD, oxidoreductase; HET: NAG FAD GSH; 2.40A {Saccharomyces cerevisiae}

Probab=97.28  E-value=0.00035  Score=77.31  Aligned_cols=59  Identities=22%  Similarity=0.180  Sum_probs=40.4

Q ss_pred             CCCeEEEcCeEEEEEEEccCCcEEEEEEEecCCcEEEEEcCcEEEEccCCcchHHH-HHHcCCC
Q psy14408        647 RTNLYVLKRSKVTKVIINDQNVATGVEYVNSKGETVRVTANKEVILTAGAIANAQL-LLLSGIG  709 (720)
Q Consensus       647 ~aGVkIi~gt~VtkIl~e~gGrAtGV~v~dt~G~e~tIkAkK~VVVAAGa~~Sp~L-Ll~SGIg  709 (720)
                      +.|++|+++++|++|..++++++..|++.  +|+ .++.++ .||+|+|......| |..+|+.
T Consensus       238 ~~Gv~i~~~~~v~~i~~~~~~~~~~v~~~--~G~-~~i~~D-~vv~a~G~~p~~~l~l~~~gl~  297 (479)
T 2hqm_A          238 KEGINVHKLSKIVKVEKNVETDKLKIHMN--DSK-SIDDVD-ELIWTIGRKSHLGMGSENVGIK  297 (479)
T ss_dssp             HHTCEEECSCCEEEEEECC-CCCEEEEET--TSC-EEEEES-EEEECSCEEECCCSSGGGGTCC
T ss_pred             hCCeEEEeCCEEEEEEEcCCCcEEEEEEC--CCc-EEEEcC-EEEECCCCCCccccChhhcCce
Confidence            56999999999999987523323445543  353 478998 59999997555445 5666664

>1ges_A Glutathione reductase; oxidoreductase(flavoenzyme); HET: FAD; 1.74A {Escherichia coli} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1geu_A* 1ger_A* 1get_A*

Probab=97.27  E-value=0.00044  Score=75.86  Aligned_cols=32  Identities=25%  Similarity=0.319  Sum_probs=30.5

Q ss_pred             cEEEECCcHHHHHHHHHHHhcCCCcEEEEccCC
Q psy14408        435 DIIIVGASAAGCVLANRLSEVSSLKVLLIEAGG  467 (720)
Q Consensus       435 DVVIIGSGiAGLvAA~~LAea~G~KVLVLEKG~  467 (720)
                      .|+|||+|..|+-+|..|++. |.+|+|+|++.
T Consensus       169 ~vvViGgG~~g~e~A~~l~~~-g~~Vtlv~~~~  200 (450)
T 1ges_A          169 RVAVVGAGYIGVELGGVINGL-GAKTHLFEMFD  200 (450)
T ss_dssp             EEEEECCSHHHHHHHHHHHHT-TCEEEEECSSS
T ss_pred             eEEEECCCHHHHHHHHHHHhc-CCEEEEEEeCC
Confidence            899999999999999999999 99999999873

>2yqu_A 2-oxoglutarate dehydrogenase E3 component; lipoamide dehydrogenase, 2-oxoglutarate dehydrogenase comple pyruvate dehydrogenase complex; HET: FAD; 1.70A {Thermus thermophilus} PDB: 2eq7_A*

Probab=97.26  E-value=0.0006  Score=74.64  Aligned_cols=32  Identities=22%  Similarity=0.353  Sum_probs=30.4

Q ss_pred             cEEEECCcHHHHHHHHHHHhcCCCcEEEEccCC
Q psy14408        435 DIIIVGASAAGCVLANRLSEVSSLKVLLIEAGG  467 (720)
Q Consensus       435 DVVIIGSGiAGLvAA~~LAea~G~KVLVLEKG~  467 (720)
                      .|+|||+|.+|+-+|..|++. |.+|+|+|++.
T Consensus       169 ~vvIiGgG~~g~e~A~~l~~~-g~~V~lv~~~~  200 (455)
T 2yqu_A          169 RLIVVGGGVIGLELGVVWHRL-GAEVIVLEYMD  200 (455)
T ss_dssp             EEEEECCSHHHHHHHHHHHHT-TCEEEEECSSS
T ss_pred             eEEEECCCHHHHHHHHHHHHc-CCEEEEEecCC
Confidence            799999999999999999999 99999999873

>1y56_A Hypothetical protein PH1363; dehydrogenase, protein-protein complex, oxidoreductase; HET: FAD FMN ATP CXS; 2.86A {Pyrococcus horikoshii}

Probab=97.24  E-value=0.00013  Score=81.28  Aligned_cols=57  Identities=14%  Similarity=0.142  Sum_probs=43.9

Q ss_pred             cCCCeEEEcCeEEEEEEEccCCcEEEEEEEecCCcEEEEEcCcEEEEccCCcchHHHHHHcCCC
Q psy14408        646 KRTNLYVLKRSKVTKVIINDQNVATGVEYVNSKGETVRVTANKEVILTAGAIANAQLLLLSGIG  709 (720)
Q Consensus       646 e~aGVkIi~gt~VtkIl~e~gGrAtGV~v~dt~G~e~tIkAkK~VVVAAGa~~Sp~LLl~SGIg  709 (720)
                      ++.|++|++++.|++|..+  +++.+|+..  +|+  ++.++ .||+|+|......|+..+|+.
T Consensus       268 ~~~GV~v~~~~~v~~i~~~--~~v~~v~~~--~g~--~i~aD-~Vv~a~G~~p~~~l~~~~g~~  324 (493)
T 1y56_A          268 ERWGIDYVHIPNVKRVEGN--EKVERVIDM--NNH--EYKVD-ALIFADGRRPDINPITQAGGK  324 (493)
T ss_dssp             HHHTCEEEECSSEEEEECS--SSCCEEEET--TCC--EEECS-EEEECCCEEECCHHHHHTTCC
T ss_pred             HhCCcEEEeCCeeEEEecC--CceEEEEeC--CCe--EEEeC-EEEECCCcCcCchHHHhcCCC
Confidence            3679999999999999754  445566542  353  78998 599999987777788888874

>1nhp_A NADH peroxidase; oxidoreductase (H2O2(A)); HET: FAD; 2.00A {Enterococcus faecalis} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1npx_A* 1joa_A* 2npx_A* 1nhq_A* 1nhs_A* 1nhr_A* 1f8w_A*

Probab=97.23  E-value=0.00019  Score=78.47  Aligned_cols=35  Identities=20%  Similarity=0.353  Sum_probs=31.8

Q ss_pred             cEEEECCcHHHHHHHHHHHhc-CCCcEEEEccCCCC
Q psy14408        435 DIIIVGASAAGCVLANRLSEV-SSLKVLLIEAGGDT  469 (720)
Q Consensus       435 DVVIIGSGiAGLvAA~~LAea-~G~KVLVLEKG~~~  469 (720)
                      ||||||||.+|++||.+|++. +|++|+|||++...
T Consensus         2 dvvIIG~G~aGl~aA~~l~~~~~g~~V~lie~~~~~   37 (447)
T 1nhp_A            2 KVIVLGSSHGGYEAVEELLNLHPDAEIQWYEKGDFI   37 (447)
T ss_dssp             EEEEECSSHHHHHHHHHHHHHCTTSEEEEEESSSSS
T ss_pred             eEEEECCCHHHHHHHHHHHHhCcCCeEEEEECCCcc
Confidence            899999999999999999985 48999999998654

>3sx6_A Sulfide-quinone reductase, putative; sulfide:quinone oxidoreductase, Cys356Ala variant, integral membrane protein; HET: FAD LMT DCQ; 1.80A {Acidithiobacillus ferrooxidans} PDB: 3t0k_A* 3szc_A* 3sz0_A* 3t2z_A* 3t31_A* 3sy4_A* 3syi_A* 3sxi_A* 3t14_A* 3t2k_A* 3szw_A* 3szf_A* 3kpg_A* 3kpi_A* 3t2y_A* 3kpk_A*

Probab=97.20  E-value=0.00016  Score=78.90  Aligned_cols=35  Identities=29%  Similarity=0.364  Sum_probs=32.2

Q ss_pred             ccEEEECCcHHHHHHHHHHHh---cCCCcEEEEccCCCC
Q psy14408        434 FDIIIVGASAAGCVLANRLSE---VSSLKVLLIEAGGDT  469 (720)
Q Consensus       434 yDVVIIGSGiAGLvAA~~LAe---a~G~KVLVLEKG~~~  469 (720)
                      .||||||||++|++||.+|++   . |++|+|||++...
T Consensus         5 ~~vvIIGgG~aGl~aA~~L~~~~~~-g~~Vtlie~~~~~   42 (437)
T 3sx6_A            5 AHVVILGAGTGGMPAAYEMKEALGS-GHEVTLISANDYF   42 (437)
T ss_dssp             CEEEEECCSTTHHHHHHHHHHHHGG-GSEEEEECSSSEE
T ss_pred             CcEEEECCcHHHHHHHHHHhccCCC-cCEEEEEeCCCCC
Confidence            499999999999999999999   7 9999999998643

>2a8x_A Dihydrolipoyl dehydrogenase, E3 component of alpha; lipoamide dehydrogenase, pyruvate dehydrogenase, alpha keto acid dehydrogenase; HET: FAD; 2.40A {Mycobacterium tuberculosis} PDB: 3ii4_A*

Probab=97.20  E-value=0.0011  Score=72.84  Aligned_cols=32  Identities=31%  Similarity=0.380  Sum_probs=30.6

Q ss_pred             cEEEECCcHHHHHHHHHHHhcCCCcEEEEccCC
Q psy14408        435 DIIIVGASAAGCVLANRLSEVSSLKVLLIEAGG  467 (720)
Q Consensus       435 DVVIIGSGiAGLvAA~~LAea~G~KVLVLEKG~  467 (720)
                      .|+|||+|..|+-+|..|++. |.+|+|+|++.
T Consensus       173 ~vvViGgG~~g~E~A~~l~~~-g~~Vtlv~~~~  204 (464)
T 2a8x_A          173 SIIIAGAGAIGMEFGYVLKNY-GVDVTIVEFLP  204 (464)
T ss_dssp             EEEEECCSHHHHHHHHHHHHT-TCEEEEECSSS
T ss_pred             eEEEECCcHHHHHHHHHHHHc-CCeEEEEEcCC
Confidence            899999999999999999999 99999999984

>2qae_A Lipoamide, dihydrolipoyl dehydrogenase; FAD-cystine-oxidoreductase, homodimer; HET: FAD; 1.90A {Trypanosoma cruzi}

Probab=97.19  E-value=0.0023  Score=70.26  Aligned_cols=32  Identities=16%  Similarity=0.370  Sum_probs=30.5

Q ss_pred             cEEEECCcHHHHHHHHHHHhcCCCcEEEEccCC
Q psy14408        435 DIIIVGASAAGCVLANRLSEVSSLKVLLIEAGG  467 (720)
Q Consensus       435 DVVIIGSGiAGLvAA~~LAea~G~KVLVLEKG~  467 (720)
                      .|+|||+|..|+-+|..|++. |.+|+|+|++.
T Consensus       176 ~vvViGgG~~g~E~A~~l~~~-g~~Vtlv~~~~  207 (468)
T 2qae_A          176 TMVVIGGGVIGLELGSVWARL-GAEVTVVEFAP  207 (468)
T ss_dssp             EEEEECCSHHHHHHHHHHHHT-TCEEEEECSSS
T ss_pred             eEEEECCCHHHHHHHHHHHHh-CCEEEEEecCC
Confidence            799999999999999999999 99999999984

>1hyu_A AHPF, alkyl hydroperoxide reductase subunit F; thiol-thiolate hydrogen bond, nucleotide binding fold, thior reductase, thioredoxin; HET: FAD; 2.00A {Salmonella typhimurium} SCOP: c.3.1.5 c.3.1.5 c.47.1.2 c.47.1.2 PDB: 1zyn_A 1zyp_A

Probab=97.19  E-value=0.0021  Score=72.13  Aligned_cols=32  Identities=22%  Similarity=0.341  Sum_probs=30.4

Q ss_pred             cEEEECCcHHHHHHHHHHHhcCCCcEEEEccCC
Q psy14408        435 DIIIVGASAAGCVLANRLSEVSSLKVLLIEAGG  467 (720)
Q Consensus       435 DVVIIGSGiAGLvAA~~LAea~G~KVLVLEKG~  467 (720)
                      .|+|||+|..|+-+|..|++. |.+|+|+|++.
T Consensus       357 ~V~ViGgG~~g~E~A~~L~~~-g~~Vtlv~~~~  388 (521)
T 1hyu_A          357 RVAVIGGGNSGVEAAIDLAGI-VEHVTLLEFAP  388 (521)
T ss_dssp             EEEEECCSHHHHHHHHHHHHH-BSEEEEECSSS
T ss_pred             eEEEECCCHHHHHHHHHHHhh-CCEEEEEEeCc
Confidence            899999999999999999999 99999999873

>2q7v_A Thioredoxin reductase; rossman fold, FAD, flavoprotein, oxidoreductase, redox- active center; HET: FAD; 1.90A {Deinococcus radiodurans}

Probab=97.18  E-value=0.0026  Score=65.49  Aligned_cols=32  Identities=16%  Similarity=0.265  Sum_probs=30.3

Q ss_pred             cEEEECCcHHHHHHHHHHHhcCCCcEEEEccCC
Q psy14408        435 DIIIVGASAAGCVLANRLSEVSSLKVLLIEAGG  467 (720)
Q Consensus       435 DVVIIGSGiAGLvAA~~LAea~G~KVLVLEKG~  467 (720)
                      .|+|||+|..|+-+|..|++. |.+|+|++++.
T Consensus       154 ~v~VvG~G~~g~e~A~~l~~~-g~~Vtlv~~~~  185 (325)
T 2q7v_A          154 KVVVIGGGDAAVEEGMFLTKF-ADEVTVIHRRD  185 (325)
T ss_dssp             EEEEECCSHHHHHHHHHHTTT-CSEEEEECSSS
T ss_pred             EEEEECCCHHHHHHHHHHHhc-CCEEEEEeCCC
Confidence            799999999999999999999 99999999873

>2r9z_A Glutathione amide reductase; NAD, FAD, substrate specificity, oxidoreductase; HET: FAD; 2.10A {Marichromatium gracile} PDB: 2rab_A*

Probab=97.17  E-value=0.00095  Score=73.57  Aligned_cols=32  Identities=25%  Similarity=0.339  Sum_probs=30.4

Q ss_pred             cEEEECCcHHHHHHHHHHHhcCCCcEEEEccCC
Q psy14408        435 DIIIVGASAAGCVLANRLSEVSSLKVLLIEAGG  467 (720)
Q Consensus       435 DVVIIGSGiAGLvAA~~LAea~G~KVLVLEKG~  467 (720)
                      .|+|||+|..|+-+|..|++. |.+|+|+|++.
T Consensus       168 ~vvVvGgG~~g~e~A~~l~~~-G~~Vtlv~~~~  199 (463)
T 2r9z_A          168 RVAIIGAGYIGIELAGLLRSF-GSEVTVVALED  199 (463)
T ss_dssp             EEEEECCSHHHHHHHHHHHHT-TCEEEEECSSS
T ss_pred             EEEEECCCHHHHHHHHHHHhc-CCEEEEEEcCC
Confidence            799999999999999999999 99999999873

>1dxl_A Dihydrolipoamide dehydrogenase; oxidoreductase, multienzyme complex protein, pyruvate dehydrogenase complex, glycine decarboxylase complex; HET: FAD; 3.15A {Pisum sativum} SCOP: c.3.1.5 c.3.1.5 d.87.1.1

Probab=97.12  E-value=0.00062  Score=74.63  Aligned_cols=32  Identities=16%  Similarity=0.379  Sum_probs=30.5

Q ss_pred             cEEEECCcHHHHHHHHHHHhcCCCcEEEEccCC
Q psy14408        435 DIIIVGASAAGCVLANRLSEVSSLKVLLIEAGG  467 (720)
Q Consensus       435 DVVIIGSGiAGLvAA~~LAea~G~KVLVLEKG~  467 (720)
                      .|+|||+|..|+-+|..|++. |.+|+|+|++.
T Consensus       179 ~vvViGgG~~g~e~A~~l~~~-g~~Vtli~~~~  210 (470)
T 1dxl_A          179 KLVVIGAGYIGLEMGSVWGRI-GSEVTVVEFAS  210 (470)
T ss_dssp             EEEESCCSHHHHHHHHHHHHH-TCEEEEECSSS
T ss_pred             eEEEECCCHHHHHHHHHHHHc-CCcEEEEEcCC
Confidence            899999999999999999999 99999999873

>1onf_A GR, grase, glutathione reductase; oxidoreductase; HET: FAD; 2.60A {Plasmodium falciparum} SCOP: c.3.1.5 c.3.1.5 d.87.1.1

Probab=97.06  E-value=0.001  Score=73.95  Aligned_cols=32  Identities=22%  Similarity=0.357  Sum_probs=30.5

Q ss_pred             cEEEECCcHHHHHHHHHHHhcCCCcEEEEccCC
Q psy14408        435 DIIIVGASAAGCVLANRLSEVSSLKVLLIEAGG  467 (720)
Q Consensus       435 DVVIIGSGiAGLvAA~~LAea~G~KVLVLEKG~  467 (720)
                      .|+|||+|..|+-+|..|++. |.+|+|+|+++
T Consensus       178 ~vvViGgG~ig~E~A~~l~~~-g~~Vtlv~~~~  209 (500)
T 1onf_A          178 KIGIVGSGYIAVELINVIKRL-GIDSYIFARGN  209 (500)
T ss_dssp             EEEEECCSHHHHHHHHHHHTT-TCEEEEECSSS
T ss_pred             eEEEECChHHHHHHHHHHHHc-CCeEEEEecCC
Confidence            899999999999999999999 99999999873

>1xdi_A RV3303C-LPDA; reductase, FAD, NAD, NADP, unkno function; HET: FAD; 2.81A {Mycobacterium tuberculosis} SCOP: c.3.1.5 d.87.1.1

Probab=97.06  E-value=0.0013  Score=73.04  Aligned_cols=32  Identities=19%  Similarity=0.491  Sum_probs=30.5

Q ss_pred             cEEEECCcHHHHHHHHHHHhcCCCcEEEEccCC
Q psy14408        435 DIIIVGASAAGCVLANRLSEVSSLKVLLIEAGG  467 (720)
Q Consensus       435 DVVIIGSGiAGLvAA~~LAea~G~KVLVLEKG~  467 (720)
                      .|+|||+|..|+-+|..|++. |.+|+|+|++.
T Consensus       184 ~vvViGgG~ig~E~A~~l~~~-g~~Vtlv~~~~  215 (499)
T 1xdi_A          184 HLIVVGSGVTGAEFVDAYTEL-GVPVTVVASQD  215 (499)
T ss_dssp             SEEEESCSHHHHHHHHHHHHT-TCCEEEECSSS
T ss_pred             eEEEECCCHHHHHHHHHHHHc-CCeEEEEEcCC
Confidence            899999999999999999999 99999999984

>1cjc_A Protein (adrenodoxin reductase); flavoenzyme, MAD analysis, electron transferase, oxidoreductase; HET: FAD; 1.70A {Bos taurus} SCOP: c.3.1.1 c.4.1.1 PDB: 1e1k_A* 1e1l_A* 1e1m_A* 1e1n_A* 1e6e_A*

Probab=97.05  E-value=0.0004  Score=76.91  Aligned_cols=36  Identities=25%  Similarity=0.194  Sum_probs=33.2

Q ss_pred             cccEEEECCcHHHHHHHHHHHhcCC--CcEEEEccCCCC
Q psy14408        433 CFDIIIVGASAAGCVLANRLSEVSS--LKVLLIEAGGDT  469 (720)
Q Consensus       433 eyDVVIIGSGiAGLvAA~~LAea~G--~KVLVLEKG~~~  469 (720)
                      .+||||||||++|+.+|..|++. |  ++|+|+|+....
T Consensus         6 ~~~vvIIG~G~aGl~aA~~l~~~-g~~~~V~vie~~~~~   43 (460)
T 1cjc_A            6 TPQICVVGSGPAGFYTAQHLLKH-HSRAHVDIYEKQLVP   43 (460)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHH-CSSCEEEEECSSSSS
T ss_pred             CceEEEECcCHHHHHHHHHHHhc-CCCCCEEEEeCCCcC
Confidence            46999999999999999999998 8  999999998655

>1ojt_A Surface protein; redox-active center, glycolysis, oxidoreductase, NAD, flavop FAD, P64K; HET: FAD; 2.75A {Neisseria meningitidis} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1bhy_A*

Probab=97.04  E-value=0.0014  Score=72.51  Aligned_cols=32  Identities=16%  Similarity=0.326  Sum_probs=30.5

Q ss_pred             cEEEECCcHHHHHHHHHHHhcCCCcEEEEccCC
Q psy14408        435 DIIIVGASAAGCVLANRLSEVSSLKVLLIEAGG  467 (720)
Q Consensus       435 DVVIIGSGiAGLvAA~~LAea~G~KVLVLEKG~  467 (720)
                      .|+|||||..|+-+|..|++. |.+|+|+|+..
T Consensus       187 ~vvViGgG~ig~E~A~~l~~~-G~~Vtlv~~~~  218 (482)
T 1ojt_A          187 KLLIIGGGIIGLEMGTVYSTL-GSRLDVVEMMD  218 (482)
T ss_dssp             EEEEESCSHHHHHHHHHHHHH-TCEEEEECSSS
T ss_pred             eEEEECCCHHHHHHHHHHHHc-CCeEEEEEECC
Confidence            899999999999999999999 99999999873

>1lqt_A FPRA; NADP+ derivative, oxidoreductase, structural G PSI, protein structure initiative, TB structural genomics consortium, TBSGC; HET: FAD ODP; 1.05A {Mycobacterium tuberculosis} SCOP: c.3.1.1 c.4.1.1 PDB: 1lqu_A* 2c7g_A*

Probab=96.99  E-value=0.00036  Score=77.28  Aligned_cols=37  Identities=22%  Similarity=0.266  Sum_probs=32.7

Q ss_pred             cccEEEECCcHHHHHHHHHHHh-c-C----CCcEEEEccCCCC
Q psy14408        433 CFDIIIVGASAAGCVLANRLSE-V-S----SLKVLLIEAGGDT  469 (720)
Q Consensus       433 eyDVVIIGSGiAGLvAA~~LAe-a-~----G~KVLVLEKG~~~  469 (720)
                      .+||||||||++|+.||..|++ . +    |++|+|+|+....
T Consensus         3 ~~~VvIIG~G~aGl~aA~~L~~~~~~~~~~g~~V~lie~~~~~   45 (456)
T 1lqt_A            3 PYYIAIVGSGPSAFFAAASLLKAADTTEDLDMAVDMLEMLPTP   45 (456)
T ss_dssp             CEEEEEECCSHHHHHHHHHHHHHHHHSTTCCEEEEEEESSSSC
T ss_pred             CCEEEEECcCHHHHHHHHHHHhhCccccCCCCeEEEEecCCCC
Confidence            4699999999999999999998 5 2    7999999998654

>3lzw_A Ferredoxin--NADP reductase 2; ferredoxin reductase, FAD, NADPH, flavoprotein, oxidor; HET: FAD NAP; 1.80A {Bacillus subtilis} PDB: 3lzx_A*

Probab=96.99  E-value=0.0026  Score=65.01  Aligned_cols=60  Identities=10%  Similarity=0.112  Sum_probs=46.6

Q ss_pred             CCCeEEEcCeEEEEEEEccCCcEEEEEEEec-CCcEEEEEcCcEEEEccCCcchHHHHHHcCCC
Q psy14408        647 RTNLYVLKRSKVTKVIINDQNVATGVEYVNS-KGETVRVTANKEVILTAGAIANAQLLLLSGIG  709 (720)
Q Consensus       647 ~aGVkIi~gt~VtkIl~e~gGrAtGV~v~dt-~G~e~tIkAkK~VVVAAGa~~Sp~LLl~SGIg  709 (720)
                      +.|++++.+++|++|..+ ++ +.+|++.+. .|+..++.++ .||+|+|......+|..+|+.
T Consensus       201 ~~gv~~~~~~~v~~i~~~-~~-~~~v~~~~~~~g~~~~~~~D-~vv~a~G~~p~~~~~~~~~~~  261 (332)
T 3lzw_A          201 ASKVNVLTPFVPAELIGE-DK-IEQLVLEEVKGDRKEILEID-DLIVNYGFVSSLGPIKNWGLD  261 (332)
T ss_dssp             HSSCEEETTEEEEEEECS-SS-CCEEEEEETTSCCEEEEECS-EEEECCCEECCCGGGGGSSCC
T ss_pred             cCCeEEEeCceeeEEecC-Cc-eEEEEEEecCCCceEEEECC-EEEEeeccCCCchHHhhcCcc
Confidence            568999999999999865 44 667888763 4556789998 699999977666777777765

>3ayj_A Pro-enzyme of L-phenylalanine oxidase; amino acid oxidase, flavoenzyme, L- binding, oxidoreductase; HET: FAD PHE; 1.10A {Pseudomonas} PDB: 2yr4_A* 2yr6_A* 3ayi_A* 2yr5_A* 3ayl_A*

Probab=96.96  E-value=0.00028  Score=82.85  Aligned_cols=36  Identities=28%  Similarity=0.408  Sum_probs=33.2

Q ss_pred             cccEEEECCcHHHHHHHHHHHhcCC--------CcEEEEccCC-CC
Q psy14408        433 CFDIIIVGASAAGCVLANRLSEVSS--------LKVLLIEAGG-DT  469 (720)
Q Consensus       433 eyDVVIIGSGiAGLvAA~~LAea~G--------~KVLVLEKG~-~~  469 (720)
                      ..+|+|||||++||+||++|+++ |        ++|+|+|+.. ..
T Consensus        56 ~~~v~IiGaGiaGL~aA~~L~~~-g~~~~~~~~~~V~v~E~~~~r~  100 (721)
T 3ayj_A           56 NYRIAIVGGGAGGIAALYELGRL-AATLPAGSGIDVQIYEADPDSF  100 (721)
T ss_dssp             EEEEEEECCSHHHHHHHHHHHHH-HTTSCTTCEEEEEEECCCTTBG
T ss_pred             CCeEEEECCCHHHHHHHHHHHHc-CcccccCCCceEEEEeccCccc
Confidence            46999999999999999999999 8        9999999987 55

>3dk9_A Grase, GR, glutathione reductase; flavoenzyme, nicotinamide, acetylation, alternative initiation, cytoplasm, FAD, flavoprotein, mitochondrion, NADP; HET: SO4 FAD; 0.95A {Homo sapiens} PDB: 1bwc_A* 1gra_A* 1gre_A* 1grf_A* 1grh_A* 1grb_A* 2gh5_A* 1gsn_A* 3dk4_A* 3dk8_A* 3djj_A* 3grs_A* 3sqp_A* 4gr1_A* 2aaq_A* 1dnc_A* 1grg_A* 1grt_A* 1xan_A* 5grt_A* ...

Probab=96.93  E-value=0.003  Score=69.48  Aligned_cols=32  Identities=28%  Similarity=0.271  Sum_probs=30.3

Q ss_pred             cEEEECCcHHHHHHHHHHHhcCCCcEEEEccCC
Q psy14408        435 DIIIVGASAAGCVLANRLSEVSSLKVLLIEAGG  467 (720)
Q Consensus       435 DVVIIGSGiAGLvAA~~LAea~G~KVLVLEKG~  467 (720)
                      .|+|||+|..|+-+|..|++. |.+|+|++++.
T Consensus       189 ~vvViGgG~~g~E~A~~l~~~-g~~Vtlv~~~~  220 (478)
T 3dk9_A          189 RSVIVGAGYIAVEMAGILSAL-GSKTSLMIRHD  220 (478)
T ss_dssp             EEEEECCSHHHHHHHHHHHHT-TCEEEEECSSS
T ss_pred             cEEEECCCHHHHHHHHHHHHc-CCeEEEEEeCC
Confidence            799999999999999999999 99999999873

>4eqs_A Coenzyme A disulfide reductase; oxidoreductase; HET: COA FAD; 1.50A {Staphylococcus aureus subsp} PDB: 1yqz_A* 4eqw_A* 4em4_A* 4em3_A* 4eqr_A* 4emw_A* 4eqx_A*

Probab=96.80  E-value=0.0007  Score=74.22  Aligned_cols=59  Identities=12%  Similarity=0.139  Sum_probs=41.8

Q ss_pred             HHHHHHhcCCCeEEEcCeEEEEEEEccCCcEEEEEEEecCCcEEEEEcCcEEEEccCCcchHHHHHHcCCC
Q psy14408        639 YLTPIAGKRTNLYVLKRSKVTKVIINDQNVATGVEYVNSKGETVRVTANKEVILTAGAIANAQLLLLSGIG  709 (720)
Q Consensus       639 ~L~~Aa~e~aGVkIi~gt~VtkIl~e~gGrAtGV~v~dt~G~e~tIkAkK~VVVAAGa~~Sp~LLl~SGIg  709 (720)
                      .+.+.. ++.|++++++++|+++..+      .|.+.  +|+  ++.++ .||+|+|......+|..+|+.
T Consensus       193 ~~~~~l-~~~gV~i~~~~~v~~~~~~------~v~~~--~g~--~~~~D-~vl~a~G~~Pn~~~~~~~gl~  251 (437)
T 4eqs_A          193 PILDEL-DKREIPYRLNEEINAINGN------EITFK--SGK--VEHYD-MIIEGVGTHPNSKFIESSNIK  251 (437)
T ss_dssp             HHHHHH-HHTTCCEEESCCEEEEETT------EEEET--TSC--EEECS-EEEECCCEEESCGGGTTSSCC
T ss_pred             HHHHHh-hccceEEEeccEEEEecCC------eeeec--CCe--EEeee-eEEEEeceecCcHHHHhhhhh
Confidence            344444 5789999999999988532      23333  354  68898 599999977666677777775

>1zk7_A HGII, reductase, mercuric reductase; mercuric ION reductase, oxidoreductase; HET: FAD; 1.60A {Pseudomonas aeruginosa} PDB: 1zx9_A*

Probab=96.78  E-value=0.0029  Score=69.36  Aligned_cols=32  Identities=19%  Similarity=0.353  Sum_probs=30.4

Q ss_pred             cEEEECCcHHHHHHHHHHHhcCCCcEEEEccCC
Q psy14408        435 DIIIVGASAAGCVLANRLSEVSSLKVLLIEAGG  467 (720)
Q Consensus       435 DVVIIGSGiAGLvAA~~LAea~G~KVLVLEKG~  467 (720)
                      .|+|||+|..|+-+|..|++. |.+|+|+|++.
T Consensus       178 ~vvViGgG~~g~E~A~~l~~~-g~~Vtlv~~~~  209 (467)
T 1zk7_A          178 RLAVIGSSVVALELAQAFARL-GSKVTVLARNT  209 (467)
T ss_dssp             EEEEECCSHHHHHHHHHHHHT-TCEEEEECSSC
T ss_pred             EEEEECCCHHHHHHHHHHHHc-CCEEEEEEECC
Confidence            799999999999999999999 99999999873

>2wpf_A Trypanothione reductase; oxidoreductase, trypanosomiasis, sleeping sickness, flavoPro redox-active center; HET: FAD WPF; 1.90A {Trypanosoma brucei} PDB: 2wov_A* 2wow_A* 2wp5_A* 2wp6_A* 2wpc_A* 2wpe_A* 2woi_A* 2wba_A* 1nda_A* 1gxf_A* 1bzl_A* 1aog_A*

Probab=96.74  E-value=0.0028  Score=70.53  Aligned_cols=33  Identities=18%  Similarity=0.177  Sum_probs=29.9

Q ss_pred             cEEEECCcHHHHHHHHHHHhcC--CCcEEEEccCC
Q psy14408        435 DIIIVGASAAGCVLANRLSEVS--SLKVLLIEAGG  467 (720)
Q Consensus       435 DVVIIGSGiAGLvAA~~LAea~--G~KVLVLEKG~  467 (720)
                      .|+|||+|..|+-+|..|++..  |.+|+|||++.
T Consensus       193 ~vvViGgG~ig~E~A~~l~~~~~~g~~Vtlv~~~~  227 (495)
T 2wpf_A          193 RVLTVGGGFISVEFAGIFNAYKPPGGKVTLCYRNN  227 (495)
T ss_dssp             EEEEECSSHHHHHHHHHHHHHCCTTCEEEEEESSS
T ss_pred             eEEEECCCHHHHHHHHHHHhhCCCCCeEEEEEcCC
Confidence            8999999999999999998752  89999999874

>4eqs_A Coenzyme A disulfide reductase; oxidoreductase; HET: COA FAD; 1.50A {Staphylococcus aureus subsp} PDB: 1yqz_A* 4eqw_A* 4em4_A* 4em3_A* 4eqr_A* 4emw_A* 4eqx_A*

Probab=96.73  E-value=0.0022  Score=70.24  Aligned_cols=33  Identities=24%  Similarity=0.339  Sum_probs=31.1

Q ss_pred             cEEEECCcHHHHHHHHHHHhcCCCcEEEEccCCC
Q psy14408        435 DIIIVGASAAGCVLANRLSEVSSLKVLLIEAGGD  468 (720)
Q Consensus       435 DVVIIGSGiAGLvAA~~LAea~G~KVLVLEKG~~  468 (720)
                      .|||||||..|+-+|..|++. |.+|+|+|++..
T Consensus       149 ~vvViGgG~ig~E~A~~l~~~-g~~Vtlv~~~~~  181 (437)
T 4eqs_A          149 KVLVVGAGYVSLEVLENLYER-GLHPTLIHRSDK  181 (437)
T ss_dssp             EEEEECCSHHHHHHHHHHHHH-TCEEEEEESSSC
T ss_pred             EEEEECCccchhhhHHHHHhc-CCcceeeeeecc
Confidence            799999999999999999999 999999999853

>1fec_A Trypanothione reductase; redox-active center, oxidoreductase, flavoprotein, FAD, NADP; HET: FAD; 1.70A {Crithidia fasciculata} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1fea_A* 1feb_A* 2tpr_A* 1tyt_A* 1typ_A* 2jk6_A* 2w0h_A* 2yau_A* 2x50_A* 2ve2_A*

Probab=96.72  E-value=0.0027  Score=70.56  Aligned_cols=33  Identities=18%  Similarity=0.140  Sum_probs=29.9

Q ss_pred             cEEEECCcHHHHHHHHHHHhcC--CCcEEEEccCC
Q psy14408        435 DIIIVGASAAGCVLANRLSEVS--SLKVLLIEAGG  467 (720)
Q Consensus       435 DVVIIGSGiAGLvAA~~LAea~--G~KVLVLEKG~  467 (720)
                      .|+|||+|..|+-+|..|++..  |.+|+|||++.
T Consensus       189 ~vvViGgG~ig~E~A~~l~~~~~~g~~Vtlv~~~~  223 (490)
T 1fec_A          189 RALCVGGGYISIEFAGIFNAYKARGGQVDLAYRGD  223 (490)
T ss_dssp             EEEEECSSHHHHHHHHHHHHHSCTTCEEEEEESSS
T ss_pred             eEEEECCCHHHHHHHHHHHhhccCcCeEEEEEcCC
Confidence            8999999999999999998752  89999999984

>3klj_A NAD(FAD)-dependent dehydrogenase, NIRB-family (N- domain); FAD-binding protein, GR-fold, oxidoreductase; HET: FAD; 2.10A {Clostridium acetobutylicum}

Probab=96.63  E-value=0.0013  Score=71.05  Aligned_cols=36  Identities=22%  Similarity=0.230  Sum_probs=32.1

Q ss_pred             cccEEEECCcHHHHHHHHHHHhcCCCcEEEEccCCCC
Q psy14408        433 CFDIIIVGASAAGCVLANRLSEVSSLKVLLIEAGGDT  469 (720)
Q Consensus       433 eyDVVIIGSGiAGLvAA~~LAea~G~KVLVLEKG~~~  469 (720)
                      ...|||||||.+|+.||..|++. |.+|+|+|+....
T Consensus         9 ~~~~vIvGgG~AGl~aA~~L~~~-~~~itlie~~~~~   44 (385)
T 3klj_A            9 STKILILGAGPAGFSAAKAALGK-CDDITMINSEKYL   44 (385)
T ss_dssp             BCSEEEECCSHHHHHHHHHHTTT-CSCEEEECSSSSC
T ss_pred             CCCEEEEcCcHHHHHHHHHHhCC-CCEEEEEECCCCC
Confidence            34899999999999999999666 9999999998764

>4g6h_A Rotenone-insensitive NADH-ubiquinone oxidoreducta mitochondrial; rossmann fold, electron transfer, FAD, oxidoreductase; HET: FAD NAD; 2.26A {Saccharomyces cerevisiae} PDB: 4g6g_A* 4g73_A* 4g74_A* 4g9k_A* 4gap_A* 4gav_A*

Probab=96.55  E-value=0.00096  Score=74.76  Aligned_cols=34  Identities=12%  Similarity=0.230  Sum_probs=31.5

Q ss_pred             ccEEEECCcHHHHHHHHHHHhcCCCcEEEEccCCC
Q psy14408        434 FDIIIVGASAAGCVLANRLSEVSSLKVLLIEAGGD  468 (720)
Q Consensus       434 yDVVIIGSGiAGLvAA~~LAea~G~KVLVLEKG~~  468 (720)
                      -.|||||||.+|+.+|.+|+++ |++|+|||+..+
T Consensus        43 prVVIIGgG~AGl~~A~~L~~~-~~~VtLId~~~~   76 (502)
T 4g6h_A           43 PNVLILGSGWGAISFLKHIDTK-KYNVSIISPRSY   76 (502)
T ss_dssp             CEEEEECSSHHHHHHHHHSCTT-TCEEEEEESSSE
T ss_pred             CCEEEECCcHHHHHHHHHhhhC-CCcEEEECCCCC
Confidence            4799999999999999999998 999999999754

>3qfa_A Thioredoxin reductase 1, cytoplasmic; protein-protein complex, rossmann fold, HO pyridine nucleotide disulfide oxidoreductase, electron TRAN oxidoreductase; HET: FAD; 2.20A {Homo sapiens} PDB: 3qfb_A* 2j3n_A* 2zzc_A* 2zzb_A* 2zz0_A* 2cfy_A* 1h6v_A* 3ean_A* 3eao_A*

Probab=96.31  E-value=0.013  Score=65.49  Aligned_cols=31  Identities=26%  Similarity=0.325  Sum_probs=29.4

Q ss_pred             cEEEECCcHHHHHHHHHHHhcCCCcEEEEccC
Q psy14408        435 DIIIVGASAAGCVLANRLSEVSSLKVLLIEAG  466 (720)
Q Consensus       435 DVVIIGSGiAGLvAA~~LAea~G~KVLVLEKG  466 (720)
                      .|+|||+|..|+-+|..|++. |.+|+|+|+.
T Consensus       212 ~vvVIGgG~ig~E~A~~l~~~-G~~Vtlv~~~  242 (519)
T 3qfa_A          212 KTLVVGASYVALECAGFLAGI-GLDVTVMVRS  242 (519)
T ss_dssp             SEEEECCSHHHHHHHHHHHHT-TCCEEEEESS
T ss_pred             eEEEECCcHHHHHHHHHHHHc-CCeEEEEecc
Confidence            599999999999999999999 9999999975

>1cjc_A Protein (adrenodoxin reductase); flavoenzyme, MAD analysis, electron transferase, oxidoreductase; HET: FAD; 1.70A {Bos taurus} SCOP: c.3.1.1 c.4.1.1 PDB: 1e1k_A* 1e1l_A* 1e1m_A* 1e1n_A* 1e6e_A*

Probab=95.79  E-value=0.05  Score=60.12  Aligned_cols=52  Identities=12%  Similarity=0.125  Sum_probs=39.4

Q ss_pred             CCeEEEcCeEEEEEEEccCC-cEEEEEEEec-------------CCcEEEEEcCcEEEEccCCcchH
Q psy14408        648 TNLYVLKRSKVTKVIINDQN-VATGVEYVNS-------------KGETVRVTANKEVILTAGAIANA  700 (720)
Q Consensus       648 aGVkIi~gt~VtkIl~e~gG-rAtGV~v~dt-------------~G~e~tIkAkK~VVVAAGa~~Sp  700 (720)
                      .|++|++++.+++|+.++++ ++.+|++.+.             +|+..++.|+ .||+|+|.....
T Consensus       270 ~gv~~~~~~~~~~i~~~~~~~~v~~v~~~~~~l~~~~~~~~~~~~g~~~~i~~d-~Vi~a~G~~p~~  335 (460)
T 1cjc_A          270 RAWGLRFFRSPQQVLPSPDGRRAAGIRLAVTRLEGIGEATRAVPTGDVEDLPCG-LVLSSIGYKSRP  335 (460)
T ss_dssp             EEEEEECSEEEEEEEECTTSSSEEEEEEEEEEEESSGGGCEEEEEEEEEEEECS-EEEECCCEECCC
T ss_pred             ceEEEECCCChheEEcCCCCceEEEEEEEEEEEccccCCCcccCCCceEEEEcC-EEEECCCCCCCC
Confidence            79999999999999865226 8888887632             2444689998 699999965544

>4g6h_A Rotenone-insensitive NADH-ubiquinone oxidoreducta mitochondrial; rossmann fold, electron transfer, FAD, oxidoreductase; HET: FAD NAD; 2.26A {Saccharomyces cerevisiae} PDB: 4g6g_A* 4g73_A* 4g74_A* 4g9k_A* 4gap_A* 4gav_A*

Probab=95.68  E-value=0.02  Score=64.03  Aligned_cols=50  Identities=20%  Similarity=0.259  Sum_probs=33.1

Q ss_pred             cCCCeEEEcCeEEEEEEEccCCcEEEEEEEecCCc--EEEEEcCcEEEEccCCcchH
Q psy14408        646 KRTNLYVLKRSKVTKVIINDQNVATGVEYVNSKGE--TVRVTANKEVILTAGAIANA  700 (720)
Q Consensus       646 e~aGVkIi~gt~VtkIl~e~gGrAtGV~v~dt~G~--e~tIkAkK~VVVAAGa~~Sp  700 (720)
                      ++.||+|+++++|++|.-+  +.+.  .....+|.  +.+|.|+ .||.|+|.-.++
T Consensus       283 ~~~GV~v~~~~~v~~v~~~--~~~~--~~~~~dg~~~~~~i~ad-~viwa~Gv~~~~  334 (502)
T 4g6h_A          283 ENTSIKVHLRTAVAKVEEK--QLLA--KTKHEDGKITEETIPYG-TLIWATGNKARP  334 (502)
T ss_dssp             HHTTCEEETTEEEEEECSS--EEEE--EEECTTSCEEEEEEECS-EEEECCCEECCH
T ss_pred             HhcceeeecCceEEEEeCC--ceEE--EEEecCcccceeeeccC-EEEEccCCcCCH
Confidence            4789999999999998532  2222  22222343  3579998 699999975553

>2gag_A Heterotetrameric sarcosine oxidase alpha-subunit; flavoenzyme, electron transfer, folate-ME enzyme, oxidoreductase; HET: NAD FAD FMN; 1.85A {Stenotrophomonas maltophilia} PDB: 2gah_A* 1x31_A* 1vrq_A* 3ad7_A* 3ad8_A* 3ad9_A* 3ada_A*

Probab=95.55  E-value=0.031  Score=67.49  Aligned_cols=32  Identities=19%  Similarity=0.232  Sum_probs=30.2

Q ss_pred             cEEEECCcHHHHHHHHHHHhcCCCcEEEEccCC
Q psy14408        435 DIIIVGASAAGCVLANRLSEVSSLKVLLIEAGG  467 (720)
Q Consensus       435 DVVIIGSGiAGLvAA~~LAea~G~KVLVLEKG~  467 (720)
                      .|||||+|..|+-+|..|++. |.+|+|||+..
T Consensus       286 ~vvViGgG~~g~E~A~~L~~~-G~~Vtvv~~~~  317 (965)
T 2gag_A          286 RIAVATTNDSAYELVRELAAT-GGVVAVIDARS  317 (965)
T ss_dssp             SEEEEESSTTHHHHHHHHGGG-TCCSEEEESCS
T ss_pred             eEEEEcCCHHHHHHHHHHHHc-CCcEEEEECCC
Confidence            799999999999999999999 99999999873

>1nhp_A NADH peroxidase; oxidoreductase (H2O2(A)); HET: FAD; 2.00A {Enterococcus faecalis} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1npx_A* 1joa_A* 2npx_A* 1nhq_A* 1nhs_A* 1nhr_A* 1f8w_A*

Probab=95.27  E-value=0.013  Score=63.95  Aligned_cols=36  Identities=17%  Similarity=0.306  Sum_probs=33.0

Q ss_pred             cccEEEECCcHHHHHHHHHHHhcCCCcEEEEccCCCC
Q psy14408        433 CFDIIIVGASAAGCVLANRLSEVSSLKVLLIEAGGDT  469 (720)
Q Consensus       433 eyDVVIIGSGiAGLvAA~~LAea~G~KVLVLEKG~~~  469 (720)
                      ..+|+|||+|.+|+.+|..|++. |.+|+|+|++...
T Consensus       149 ~~~vvIiG~G~~g~e~A~~l~~~-g~~Vtlv~~~~~~  184 (447)
T 1nhp_A          149 VNNVVVIGSGYIGIEAAEAFAKA-GKKVTVIDILDRP  184 (447)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHT-TCEEEEEESSSST
T ss_pred             CCeEEEECCCHHHHHHHHHHHHC-CCeEEEEecCccc
Confidence            35999999999999999999999 9999999998654

>1lss_A TRK system potassium uptake protein TRKA homolog; KTN domain, NAD, RCK domain, potassium transport, potassium channel, KTRA; HET: NAD; 2.30A {Methanocaldococcus jannaschii} SCOP: c.2.1.9

Probab=95.08  E-value=0.019  Score=51.40  Aligned_cols=31  Identities=39%  Similarity=0.539  Sum_probs=29.6

Q ss_pred             cEEEECCcHHHHHHHHHHHhcCCCcEEEEccC
Q psy14408        435 DIIIVGASAAGCVLANRLSEVSSLKVLLIEAG  466 (720)
Q Consensus       435 DVVIIGSGiAGLvAA~~LAea~G~KVLVLEKG  466 (720)
                      .|+|||+|..|..+|..|++. |++|+++|+.
T Consensus         6 ~i~IiG~G~iG~~~a~~L~~~-g~~v~~~d~~   36 (140)
T 1lss_A            6 YIIIAGIGRVGYTLAKSLSEK-GHDIVLIDID   36 (140)
T ss_dssp             EEEEECCSHHHHHHHHHHHHT-TCEEEEEESC
T ss_pred             EEEEECCCHHHHHHHHHHHhC-CCeEEEEECC
Confidence            699999999999999999999 9999999985

>3klj_A NAD(FAD)-dependent dehydrogenase, NIRB-family (N- domain); FAD-binding protein, GR-fold, oxidoreductase; HET: FAD; 2.10A {Clostridium acetobutylicum}

Probab=95.07  E-value=0.017  Score=62.26  Aligned_cols=34  Identities=15%  Similarity=0.095  Sum_probs=32.2

Q ss_pred             cEEEECCcHHHHHHHHHHHhcCCCcEEEEccCCCC
Q psy14408        435 DIIIVGASAAGCVLANRLSEVSSLKVLLIEAGGDT  469 (720)
Q Consensus       435 DVVIIGSGiAGLvAA~~LAea~G~KVLVLEKG~~~  469 (720)
                      .|+|||+|..|+-+|..|++. |.+|+|+|++...
T Consensus       148 ~vvVIGgG~~g~E~A~~l~~~-g~~Vtvv~~~~~~  181 (385)
T 3klj_A          148 KAFIIGGGILGIELAQAIIDS-GTPASIGIILEYP  181 (385)
T ss_dssp             CEEEECCSHHHHHHHHHHHHH-TCCEEEECSSSSS
T ss_pred             eEEEECCCHHHHHHHHHHHhC-CCeEEEEEcCCcc
Confidence            899999999999999999999 9999999998755

>3llv_A Exopolyphosphatase-related protein; NAD(P)-binding, rossmann, PSI, M structural genomics; 1.70A {Archaeoglobus fulgidus}

Probab=95.02  E-value=0.02  Score=52.13  Aligned_cols=31  Identities=32%  Similarity=0.561  Sum_probs=29.8

Q ss_pred             cEEEECCcHHHHHHHHHHHhcCCCcEEEEccC
Q psy14408        435 DIIIVGASAAGCVLANRLSEVSSLKVLLIEAG  466 (720)
Q Consensus       435 DVVIIGSGiAGLvAA~~LAea~G~KVLVLEKG  466 (720)
                      .|+|+|+|..|..+|..|+++ |++|+++|+.
T Consensus         8 ~v~I~G~G~iG~~la~~L~~~-g~~V~~id~~   38 (141)
T 3llv_A            8 EYIVIGSEAAGVGLVRELTAA-GKKVLAVDKS   38 (141)
T ss_dssp             SEEEECCSHHHHHHHHHHHHT-TCCEEEEESC
T ss_pred             EEEEECCCHHHHHHHHHHHHC-CCeEEEEECC
Confidence            699999999999999999999 9999999986

>4gcm_A TRXR, thioredoxin reductase; FAD/NAD-linked reductases, PYR redox 2 family, structural GE joint center for structural genomics, JCSG; HET: MSE FAD NAP EPE; 1.80A {Staphylococcus aureus subsp}

Probab=94.96  E-value=0.017  Score=59.20  Aligned_cols=34  Identities=12%  Similarity=0.266  Sum_probs=31.9

Q ss_pred             cEEEECCcHHHHHHHHHHHhcCCCcEEEEccCCCC
Q psy14408        435 DIIIVGASAAGCVLANRLSEVSSLKVLLIEAGGDT  469 (720)
Q Consensus       435 DVVIIGSGiAGLvAA~~LAea~G~KVLVLEKG~~~  469 (720)
                      .|+|||||..|+-+|..|++. |.+|+|||+++..
T Consensus       147 ~vvViGgG~ig~E~A~~l~~~-g~~Vtlv~~~~~~  180 (312)
T 4gcm_A          147 RLFVIGGGDSAVEEGTFLTKF-ADKVTIVHRRDEL  180 (312)
T ss_dssp             EEEEECCSHHHHHHHHHHTTT-CSEEEEECSSSSC
T ss_pred             EEEEECCCHHHHHHHHHHHhc-CCEEEEEeccccc
Confidence            799999999999999999998 9999999998655

>2g1u_A Hypothetical protein TM1088A; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: AMP; 1.50A {Thermotoga maritima} PDB: 3l4b_A*

Probab=94.90  E-value=0.021  Score=53.19  Aligned_cols=32  Identities=25%  Similarity=0.394  Sum_probs=30.1

Q ss_pred             ccEEEECCcHHHHHHHHHHHhcCCCcEEEEccC
Q psy14408        434 FDIIIVGASAAGCVLANRLSEVSSLKVLLIEAG  466 (720)
Q Consensus       434 yDVVIIGSGiAGLvAA~~LAea~G~KVLVLEKG  466 (720)
                      -.|+|||+|..|..+|..|.+. |++|+++|+.
T Consensus        20 ~~v~IiG~G~iG~~la~~L~~~-g~~V~vid~~   51 (155)
T 2g1u_A           20 KYIVIFGCGRLGSLIANLASSS-GHSVVVVDKN   51 (155)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHT-TCEEEEEESC
T ss_pred             CcEEEECCCHHHHHHHHHHHhC-CCeEEEEECC
Confidence            3799999999999999999999 9999999986

>3fwz_A Inner membrane protein YBAL; TRKA-N domain, E.coli, structural genomics, PSI-2, Pro structure initiative; HET: MSE AMP; 1.79A {Escherichia coli k-12}

Probab=94.87  E-value=0.023  Score=52.21  Aligned_cols=31  Identities=23%  Similarity=0.507  Sum_probs=30.0

Q ss_pred             cEEEECCcHHHHHHHHHHHhcCCCcEEEEccC
Q psy14408        435 DIIIVGASAAGCVLANRLSEVSSLKVLLIEAG  466 (720)
Q Consensus       435 DVVIIGSGiAGLvAA~~LAea~G~KVLVLEKG  466 (720)
                      .|+|||.|-.|..+|..|.+. |++|+++|+.
T Consensus         9 ~viIiG~G~~G~~la~~L~~~-g~~v~vid~~   39 (140)
T 3fwz_A            9 HALLVGYGRVGSLLGEKLLAS-DIPLVVIETS   39 (140)
T ss_dssp             CEEEECCSHHHHHHHHHHHHT-TCCEEEEESC
T ss_pred             CEEEECcCHHHHHHHHHHHHC-CCCEEEEECC
Confidence            799999999999999999999 9999999987

>1lvl_A Dihydrolipoamide dehydrogenase; oxidoreductase; HET: FAD NAD; 2.45A {Pseudomonas putida} SCOP: c.3.1.5 c.3.1.5 d.87.1.1

Probab=94.60  E-value=0.024  Score=62.21  Aligned_cols=34  Identities=21%  Similarity=0.341  Sum_probs=32.2

Q ss_pred             cEEEECCcHHHHHHHHHHHhcCCCcEEEEccCCCC
Q psy14408        435 DIIIVGASAAGCVLANRLSEVSSLKVLLIEAGGDT  469 (720)
Q Consensus       435 DVVIIGSGiAGLvAA~~LAea~G~KVLVLEKG~~~  469 (720)
                      .|+|||||..|+-+|..|++. |.+|+|+|++...
T Consensus       173 ~vvViGgG~~g~e~A~~l~~~-g~~Vtlv~~~~~~  206 (458)
T 1lvl_A          173 HLVVVGGGYIGLELGIAYRKL-GAQVSVVEARERI  206 (458)
T ss_dssp             EEEEECCSHHHHHHHHHHHHH-TCEEEEECSSSSS
T ss_pred             eEEEECcCHHHHHHHHHHHHC-CCeEEEEEcCCcc
Confidence            799999999999999999999 9999999998765

>3ic5_A Putative saccharopine dehydrogenase; structural genomics, APC63807.2, N-terminal domain, saccharo dehydrogenase, PSI-2; HET: MSE; 2.08A {Ruegeria pomeroyi}

Probab=94.56  E-value=0.027  Score=48.84  Aligned_cols=31  Identities=29%  Similarity=0.417  Sum_probs=29.4

Q ss_pred             cEEEECCcHHHHHHHHHHHhcCC-CcEEEEccC
Q psy14408        435 DIIIVGASAAGCVLANRLSEVSS-LKVLLIEAG  466 (720)
Q Consensus       435 DVVIIGSGiAGLvAA~~LAea~G-~KVLVLEKG  466 (720)
                      .|+|||+|..|..+|..|+++ | ++|+++++.
T Consensus         7 ~v~I~G~G~iG~~~~~~l~~~-g~~~v~~~~r~   38 (118)
T 3ic5_A            7 NICVVGAGKIGQMIAALLKTS-SNYSVTVADHD   38 (118)
T ss_dssp             EEEEECCSHHHHHHHHHHHHC-SSEEEEEEESC
T ss_pred             eEEEECCCHHHHHHHHHHHhC-CCceEEEEeCC
Confidence            699999999999999999999 9 999999986

>4a5l_A Thioredoxin reductase; oxidoreductase, redox metabolism, oxidative stress; HET: NDP FAD; 1.66A {Entamoeba histolytica} PDB: 4a65_A*

Probab=94.42  E-value=0.027  Score=57.20  Aligned_cols=35  Identities=20%  Similarity=0.244  Sum_probs=31.8

Q ss_pred             ccEEEECCcHHHHHHHHHHHhcCCCcEEEEccCCCC
Q psy14408        434 FDIIIVGASAAGCVLANRLSEVSSLKVLLIEAGGDT  469 (720)
Q Consensus       434 yDVVIIGSGiAGLvAA~~LAea~G~KVLVLEKG~~~  469 (720)
                      -.|+|||+|..|+-+|..|++. |.+|+|+|+....
T Consensus       153 ~~vvViGgG~ig~e~A~~l~~~-G~~Vt~v~~~~~~  187 (314)
T 4a5l_A          153 KVLMVVGGGDAAMEEALHLTKY-GSKVIILHRRDAF  187 (314)
T ss_dssp             SEEEEECSSHHHHHHHHHHTTT-SSEEEEECSSSSC
T ss_pred             CeEEEECCChHHHHHHHHHHHh-CCeeeeecccccc
Confidence            3799999999999999999999 9999999987543

>2v3a_A Rubredoxin reductase; alkane degradation, NADH oxidoreductase, rubredoxin reductas NAD, flavoprotein, oxidoreductase; HET: FAD; 2.4A {Pseudomonas aeruginosa} PDB: 2v3b_A*

Probab=94.32  E-value=0.032  Score=59.45  Aligned_cols=35  Identities=23%  Similarity=0.426  Sum_probs=32.3

Q ss_pred             ccEEEECCcHHHHHHHHHHHhcCCCcEEEEccCCCC
Q psy14408        434 FDIIIVGASAAGCVLANRLSEVSSLKVLLIEAGGDT  469 (720)
Q Consensus       434 yDVVIIGSGiAGLvAA~~LAea~G~KVLVLEKG~~~  469 (720)
                      -+|+|||+|..|+-+|..|++. |.+|+|+|++...
T Consensus       146 ~~v~ViGgG~~g~e~A~~l~~~-g~~Vtlv~~~~~~  180 (384)
T 2v3a_A          146 RRVLLLGAGLIGCEFANDLSSG-GYQLDVVAPCEQV  180 (384)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHT-TCEEEEEESSSSS
T ss_pred             CeEEEECCCHHHHHHHHHHHhC-CCeEEEEecCcch
Confidence            3899999999999999999999 9999999998654

>1xhc_A NADH oxidase /nitrite reductase; southe collaboratory for structural genomics, secsg, hyperthermoph protein structure initiative, PSI; HET: FAD; 2.35A {Pyrococcus furiosus} SCOP: c.3.1.5 c.3.1.5 d.87.1.1

Probab=94.27  E-value=0.031  Score=59.61  Aligned_cols=35  Identities=34%  Similarity=0.413  Sum_probs=32.3

Q ss_pred             ccEEEECCcHHHHHHHHHHHhcCCCcEEEEccCCCC
Q psy14408        434 FDIIIVGASAAGCVLANRLSEVSSLKVLLIEAGGDT  469 (720)
Q Consensus       434 yDVVIIGSGiAGLvAA~~LAea~G~KVLVLEKG~~~  469 (720)
                      -.|+|||+|..|+-+|..|++. |.+|+|+|++...
T Consensus       144 ~~vvViGgG~~g~E~A~~l~~~-g~~Vtlv~~~~~~  178 (367)
T 1xhc_A          144 GEAIIIGGGFIGLELAGNLAEA-GYHVKLIHRGAMF  178 (367)
T ss_dssp             SEEEEEECSHHHHHHHHHHHHT-TCEEEEECSSSCC
T ss_pred             CcEEEECCCHHHHHHHHHHHhC-CCEEEEEeCCCee
Confidence            3899999999999999999999 9999999998654

>2hmt_A YUAA protein; RCK, KTN, KTR, KTRA, ktrab, membrane protein, ION transporter, symporter, transport protein; HET: NAI; 2.20A {Bacillus subtilis} SCOP: c.2.1.9 PDB: 2hms_A* 2hmu_A* 2hmv_A* 2hmw_A* 1lsu_A*

Probab=94.21  E-value=0.034  Score=49.79  Aligned_cols=31  Identities=16%  Similarity=0.378  Sum_probs=29.4

Q ss_pred             cEEEECCcHHHHHHHHHHHhcCCCcEEEEccC
Q psy14408        435 DIIIVGASAAGCVLANRLSEVSSLKVLLIEAG  466 (720)
Q Consensus       435 DVVIIGSGiAGLvAA~~LAea~G~KVLVLEKG  466 (720)
                      .|+|||+|..|..+|..|++. |++|+++|+.
T Consensus         8 ~v~I~G~G~iG~~~a~~l~~~-g~~v~~~d~~   38 (144)
T 2hmt_A            8 QFAVIGLGRFGGSIVKELHRM-GHEVLAVDIN   38 (144)
T ss_dssp             SEEEECCSHHHHHHHHHHHHT-TCCCEEEESC
T ss_pred             cEEEECCCHHHHHHHHHHHHC-CCEEEEEeCC
Confidence            599999999999999999999 9999999985

>1id1_A Putative potassium channel protein; RCK domain, E.coli potassium channel, BK channel, rossmann fold, membrane protein; 2.40A {Escherichia coli} SCOP: c.2.1.9

Probab=94.16  E-value=0.047  Score=50.61  Aligned_cols=31  Identities=19%  Similarity=0.171  Sum_probs=29.7

Q ss_pred             cEEEECCcHHHHHHHHHHHhcCCCcEEEEccC
Q psy14408        435 DIIIVGASAAGCVLANRLSEVSSLKVLLIEAG  466 (720)
Q Consensus       435 DVVIIGSGiAGLvAA~~LAea~G~KVLVLEKG  466 (720)
                      .|+|||+|-.|...|..|.+. |++|+++|+.
T Consensus         5 ~vlI~G~G~vG~~la~~L~~~-g~~V~vid~~   35 (153)
T 1id1_A            5 HFIVCGHSILAINTILQLNQR-GQNVTVISNL   35 (153)
T ss_dssp             CEEEECCSHHHHHHHHHHHHT-TCCEEEEECC
T ss_pred             cEEEECCCHHHHHHHHHHHHC-CCCEEEEECC
Confidence            699999999999999999999 9999999986

>2gqw_A Ferredoxin reductase; flavoprotein, oxidoreductase; HET: FAD; 1.40A {Pseudomonas SP} PDB: 1f3p_A* 1d7y_A* 2gr0_A* 2gr1_A* 2gr2_A* 2yvf_A* 2yvg_A* 2yvj_A* 2gr3_A*

Probab=93.62  E-value=0.051  Score=58.66  Aligned_cols=35  Identities=26%  Similarity=0.340  Sum_probs=32.4

Q ss_pred             ccEEEECCcHHHHHHHHHHHhcCCCcEEEEccCCCC
Q psy14408        434 FDIIIVGASAAGCVLANRLSEVSSLKVLLIEAGGDT  469 (720)
Q Consensus       434 yDVVIIGSGiAGLvAA~~LAea~G~KVLVLEKG~~~  469 (720)
                      -.|+|||+|..|+-+|..|++. |.+|+|+|++...
T Consensus       146 ~~vvViGgG~~g~E~A~~l~~~-g~~Vtlv~~~~~~  180 (408)
T 2gqw_A          146 SRLLIVGGGVIGLELAATARTA-GVHVSLVETQPRL  180 (408)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHT-TCEEEEEESSSSS
T ss_pred             CeEEEECCCHHHHHHHHHHHhC-CCEEEEEEeCCcc
Confidence            3899999999999999999999 9999999998654

>3d1c_A Flavin-containing putative monooxygenase; NP_373108.1, struc genomics, joint center for structural genomics, JCSG; HET: FAD UNL; 2.40A {Staphylococcus aureus}

Probab=93.52  E-value=0.053  Score=56.37  Aligned_cols=34  Identities=15%  Similarity=0.281  Sum_probs=29.3

Q ss_pred             cEEEECCcHHHHHHHHHHHhcCCCcEEEEccCCCC
Q psy14408        435 DIIIVGASAAGCVLANRLSEVSSLKVLLIEAGGDT  469 (720)
Q Consensus       435 DVVIIGSGiAGLvAA~~LAea~G~KVLVLEKG~~~  469 (720)
                      .|+|||+|..|+-+|..|++. |.+|+|+|++...
T Consensus       168 ~vvVvG~G~~g~e~a~~l~~~-g~~V~lv~~~~~~  201 (369)
T 3d1c_A          168 QYVVIGGNESGFDAAYQLAKN-GSDIALYTSTTGL  201 (369)
T ss_dssp             EEEEECCSHHHHHHHHHHHHT-TCEEEEECC----
T ss_pred             EEEEECCCcCHHHHHHHHHhc-CCeEEEEecCCCC
Confidence            799999999999999999999 9999999998654

>3cgb_A Pyridine nucleotide-disulfide oxidoreductase, CLA; coenzyme A, flavin adenine dinucleotide, selenomethionine, F flavoprotein; HET: COA FAD; 1.90A {Bacillus anthracis str} PDB: 3cgc_A* 3cgd_A* 3cge_A*

Probab=93.51  E-value=0.041  Score=60.67  Aligned_cols=35  Identities=31%  Similarity=0.456  Sum_probs=32.3

Q ss_pred             ccEEEECCcHHHHHHHHHHHhcCCCcEEEEccCCCC
Q psy14408        434 FDIIIVGASAAGCVLANRLSEVSSLKVLLIEAGGDT  469 (720)
Q Consensus       434 yDVVIIGSGiAGLvAA~~LAea~G~KVLVLEKG~~~  469 (720)
                      -+|+|||+|..|+-+|..|++. |.+|+|+|++...
T Consensus       187 ~~vvViGgG~~g~e~A~~l~~~-g~~Vtlv~~~~~~  221 (480)
T 3cgb_A          187 EDVTIIGGGAIGLEMAETFVEL-GKKVRMIERNDHI  221 (480)
T ss_dssp             CEEEEECCHHHHHHHHHHHHHT-TCEEEEECCGGGT
T ss_pred             CeEEEECCCHHHHHHHHHHHhc-CCeEEEEEeCCch
Confidence            4899999999999999999999 9999999998654

>3ado_A Lambda-crystallin; L-gulonate 3-dehydrogenase, structural genomics, riken struc genomics/proteomics initiative, RSGI, acetylation; 1.70A {Oryctolagus cuniculus} PDB: 3adp_A* 3f3s_A*

Probab=93.35  E-value=0.062  Score=57.23  Aligned_cols=31  Identities=26%  Similarity=0.394  Sum_probs=29.5

Q ss_pred             cEEEECCcHHHHHHHHHHHhcCCCcEEEEccC
Q psy14408        435 DIIIVGASAAGCVLANRLSEVSSLKVLLIEAG  466 (720)
Q Consensus       435 DVVIIGSGiAGLvAA~~LAea~G~KVLVLEKG  466 (720)
                      .|.|||+|..|...|..+|.+ |++|+|+|..
T Consensus         8 ~VaViGaG~MG~giA~~~a~~-G~~V~l~D~~   38 (319)
T 3ado_A            8 DVLIVGSGLVGRSWAMLFASG-GFRVKLYDIE   38 (319)
T ss_dssp             EEEEECCSHHHHHHHHHHHHT-TCCEEEECSC
T ss_pred             eEEEECCcHHHHHHHHHHHhC-CCeEEEEECC
Confidence            699999999999999999999 9999999964

>2bc0_A NADH oxidase; flavoprotein, pyridine nucleotide disulfide oxidoreductase, C(4A)-peroxyflavin, crystallography, conformational dynamics; HET: FAD; 2.00A {Streptococcus pyogenes} PDB: 2bcp_A* 2bc1_A*

Probab=93.24  E-value=0.062  Score=59.40  Aligned_cols=35  Identities=26%  Similarity=0.341  Sum_probs=32.3

Q ss_pred             ccEEEECCcHHHHHHHHHHHhcCCCcEEEEccCCCC
Q psy14408        434 FDIIIVGASAAGCVLANRLSEVSSLKVLLIEAGGDT  469 (720)
Q Consensus       434 yDVVIIGSGiAGLvAA~~LAea~G~KVLVLEKG~~~  469 (720)
                      -.|+|||+|..|+-+|..|++. |.+|+|+|++...
T Consensus       195 ~~vvVIGgG~ig~E~A~~l~~~-g~~Vtlv~~~~~~  229 (490)
T 2bc0_A          195 KRVAVVGAGYIGVELAEAFQRK-GKEVVLIDVVDTC  229 (490)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHT-TCEEEEEESSSST
T ss_pred             ceEEEECCCHHHHHHHHHHHHC-CCeEEEEEcccch
Confidence            3799999999999999999999 9999999998654

>1f0y_A HCDH, L-3-hydroxyacyl-COA dehydrogenase; abortive ternary complex, oxidoreductase; HET: CAA NAD; 1.80A {Homo sapiens} SCOP: a.100.1.3 c.2.1.6 PDB: 3rqs_A 1lsj_A* 1il0_A* 1lso_A* 1m76_A* 1m75_A* 1f14_A 1f12_A 1f17_A* 3had_A* 2hdh_A* 3hdh_A*

Probab=93.10  E-value=0.07  Score=55.21  Aligned_cols=31  Identities=16%  Similarity=0.373  Sum_probs=29.5

Q ss_pred             cEEEECCcHHHHHHHHHHHhcCCCcEEEEccC
Q psy14408        435 DIIIVGASAAGCVLANRLSEVSSLKVLLIEAG  466 (720)
Q Consensus       435 DVVIIGSGiAGLvAA~~LAea~G~KVLVLEKG  466 (720)
                      .|.|||+|..|...|..|+++ |++|+|+|+.
T Consensus        17 ~I~VIG~G~mG~~iA~~la~~-G~~V~~~d~~   47 (302)
T 1f0y_A           17 HVTVIGGGLMGAGIAQVAAAT-GHTVVLVDQT   47 (302)
T ss_dssp             EEEEECCSHHHHHHHHHHHHT-TCEEEEECSC
T ss_pred             EEEEECCCHHHHHHHHHHHhC-CCeEEEEECC
Confidence            599999999999999999999 9999999986

>3l4b_C TRKA K+ channel protien TM1088B; potassium channel, ring-gating complex, structural GEN PSI-2-2, protein structure initiative; HET: AMP; 3.45A {Thermotoga maritima}

Probab=93.05  E-value=0.071  Score=52.36  Aligned_cols=31  Identities=23%  Similarity=0.422  Sum_probs=29.5

Q ss_pred             cEEEECCcHHHHHHHHHHHhcCCCcEEEEccC
Q psy14408        435 DIIIVGASAAGCVLANRLSEVSSLKVLLIEAG  466 (720)
Q Consensus       435 DVVIIGSGiAGLvAA~~LAea~G~KVLVLEKG  466 (720)
                      .|+|||+|-.|..+|..|.++ |++|+|+|+.
T Consensus         2 ~iiIiG~G~~G~~la~~L~~~-g~~v~vid~~   32 (218)
T 3l4b_C            2 KVIIIGGETTAYYLARSMLSR-KYGVVIINKD   32 (218)
T ss_dssp             CEEEECCHHHHHHHHHHHHHT-TCCEEEEESC
T ss_pred             EEEEECCCHHHHHHHHHHHhC-CCeEEEEECC
Confidence            489999999999999999999 9999999986

>1q1r_A Putidaredoxin reductase; glutathione reductase fold, oxidoreductase; HET: FAD; 1.91A {Pseudomonas putida} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1q1w_A* 3lb8_A*

Probab=92.88  E-value=0.082  Score=57.50  Aligned_cols=34  Identities=15%  Similarity=0.381  Sum_probs=31.8

Q ss_pred             cEEEECCcHHHHHHHHHHHhcCCCcEEEEccCCCC
Q psy14408        435 DIIIVGASAAGCVLANRLSEVSSLKVLLIEAGGDT  469 (720)
Q Consensus       435 DVVIIGSGiAGLvAA~~LAea~G~KVLVLEKG~~~  469 (720)
                      .|+|||+|..|+-+|..|++. |.+|+|+|+....
T Consensus       151 ~vvViGgG~~g~E~A~~l~~~-G~~Vtlv~~~~~~  184 (431)
T 1q1r_A          151 RLVVIGGGYIGLEVAATAIKA-NMHVTLLDTAARV  184 (431)
T ss_dssp             EEEEECCSHHHHHHHHHHHHT-TCEEEEECSSSST
T ss_pred             eEEEECCCHHHHHHHHHHHhC-CCEEEEEEeCCcc
Confidence            799999999999999999999 9999999998654

>3ic9_A Dihydrolipoamide dehydrogenase; APC62701, colwellia psychrer 34H, structural genomics, PSI-2; HET: FAD; 2.15A {Colwellia psychrerythraea}

Probab=92.87  E-value=0.08  Score=58.67  Aligned_cols=34  Identities=21%  Similarity=0.385  Sum_probs=32.3

Q ss_pred             cEEEECCcHHHHHHHHHHHhcCCCcEEEEccCCCC
Q psy14408        435 DIIIVGASAAGCVLANRLSEVSSLKVLLIEAGGDT  469 (720)
Q Consensus       435 DVVIIGSGiAGLvAA~~LAea~G~KVLVLEKG~~~  469 (720)
                      .|+|||+|..|+-+|..|++. |.+|+|+|++...
T Consensus       176 ~vvViGgG~ig~E~A~~l~~~-g~~Vtlv~~~~~~  209 (492)
T 3ic9_A          176 SVAVFGPGVIGLELGQALSRL-GVIVKVFGRSGSV  209 (492)
T ss_dssp             EEEEESSCHHHHHHHHHHHHT-TCEEEEECCTTCC
T ss_pred             eEEEECCCHHHHHHHHHHHHc-CCeEEEEEECCcc
Confidence            799999999999999999999 9999999998765

>3kd9_A Coenzyme A disulfide reductase; PSI-II, NYSGXRC, oxidoreductase, structural genomics structure initiative; 2.75A {Pyrococcus horikoshii}

Probab=92.80  E-value=0.08  Score=57.60  Aligned_cols=34  Identities=21%  Similarity=0.410  Sum_probs=32.1

Q ss_pred             cEEEECCcHHHHHHHHHHHhcCCCcEEEEccCCCC
Q psy14408        435 DIIIVGASAAGCVLANRLSEVSSLKVLLIEAGGDT  469 (720)
Q Consensus       435 DVVIIGSGiAGLvAA~~LAea~G~KVLVLEKG~~~  469 (720)
                      .|+|||+|..|+-+|..|++. |.+|+|+|++...
T Consensus       150 ~vvViGgG~~g~E~A~~l~~~-g~~Vtlv~~~~~~  183 (449)
T 3kd9_A          150 NVVIIGGGYIGIEMAEAFAAQ-GKNVTMIVRGERV  183 (449)
T ss_dssp             EEEEECCSHHHHHHHHHHHHT-TCEEEEEESSSST
T ss_pred             eEEEECCCHHHHHHHHHHHhC-CCeEEEEEcCCcc
Confidence            899999999999999999999 9999999998754

>4e12_A Diketoreductase; oxidoreductase, NADH; HET: 1PE; 1.93A {Acinetobacter baylyi} PDB: 4dyd_A* 4e13_A*

Probab=92.73  E-value=0.087  Score=54.23  Aligned_cols=32  Identities=13%  Similarity=0.233  Sum_probs=30.0

Q ss_pred             cEEEECCcHHHHHHHHHHHhcCCCcEEEEccCC
Q psy14408        435 DIIIVGASAAGCVLANRLSEVSSLKVLLIEAGG  467 (720)
Q Consensus       435 DVVIIGSGiAGLvAA~~LAea~G~KVLVLEKG~  467 (720)
                      .|.|||+|..|...|..|+++ |++|+|+|+..
T Consensus         6 kV~VIGaG~mG~~iA~~la~~-G~~V~l~d~~~   37 (283)
T 4e12_A            6 NVTVLGTGVLGSQIAFQTAFH-GFAVTAYDINT   37 (283)
T ss_dssp             EEEEECCSHHHHHHHHHHHHT-TCEEEEECSSH
T ss_pred             EEEEECCCHHHHHHHHHHHhC-CCeEEEEeCCH
Confidence            599999999999999999999 99999999863

>3ef6_A Toluene 1,2-dioxygenase system ferredoxin--NAD(+) reductase; FAD binding protein, NADH binding protein, aromatic hydrocar catabolism, FAD; HET: FAD; 1.80A {Pseudomonas putida} PDB: 4emi_A* 4emj_A*

Probab=92.71  E-value=0.086  Score=56.79  Aligned_cols=35  Identities=31%  Similarity=0.616  Sum_probs=32.3

Q ss_pred             ccEEEECCcHHHHHHHHHHHhcCCCcEEEEccCCCC
Q psy14408        434 FDIIIVGASAAGCVLANRLSEVSSLKVLLIEAGGDT  469 (720)
Q Consensus       434 yDVVIIGSGiAGLvAA~~LAea~G~KVLVLEKG~~~  469 (720)
                      -.|+|||+|..|+-+|..|++. |.+|+|+|+....
T Consensus       144 ~~vvViGgG~~g~E~A~~l~~~-g~~Vtvv~~~~~~  178 (410)
T 3ef6_A          144 TRLLIVGGGLIGCEVATTARKL-GLSVTILEAGDEL  178 (410)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHT-TCEEEEECSSSSS
T ss_pred             CeEEEECCCHHHHHHHHHHHhC-CCeEEEEecCCcc
Confidence            3799999999999999999999 9999999998654

>1ks9_A KPA reductase;, 2-dehydropantoate 2-reductase; PANE, APBA, ketopantoate reductase, rossman fold, monomer, APO, oxidoreductase; 1.70A {Escherichia coli} SCOP: a.100.1.7 c.2.1.6 PDB: 1yon_A* 1yjq_A* 2ofp_A*

Probab=92.65  E-value=0.1  Score=52.76  Aligned_cols=33  Identities=18%  Similarity=0.136  Sum_probs=30.3

Q ss_pred             cEEEECCcHHHHHHHHHHHhcCCCcEEEEccCCC
Q psy14408        435 DIIIVGASAAGCVLANRLSEVSSLKVLLIEAGGD  468 (720)
Q Consensus       435 DVVIIGSGiAGLvAA~~LAea~G~KVLVLEKG~~  468 (720)
                      .|.|||+|..|...|..|+++ |++|++++|...
T Consensus         2 ~i~iiG~G~~G~~~a~~l~~~-g~~V~~~~r~~~   34 (291)
T 1ks9_A            2 KITVLGCGALGQLWLTALCKQ-GHEVQGWLRVPQ   34 (291)
T ss_dssp             EEEEECCSHHHHHHHHHHHHT-TCEEEEECSSCC
T ss_pred             eEEEECcCHHHHHHHHHHHhC-CCCEEEEEcCcc
Confidence            489999999999999999999 999999998753

>3i83_A 2-dehydropantoate 2-reductase; structural genomics, oxidoreductase, NADP, pantothenate BIOS PSI-2, protein structure initiative; 1.90A {Methylococcus capsulatus}

Probab=92.59  E-value=0.094  Score=54.85  Aligned_cols=32  Identities=19%  Similarity=0.392  Sum_probs=30.3

Q ss_pred             cEEEECCcHHHHHHHHHHHhcCCCcEEEEccCC
Q psy14408        435 DIIIVGASAAGCVLANRLSEVSSLKVLLIEAGG  467 (720)
Q Consensus       435 DVVIIGSGiAGLvAA~~LAea~G~KVLVLEKG~  467 (720)
                      .|.|||+|..|...|..|+++ |++|++++|..
T Consensus         4 kI~IiGaGaiG~~~a~~L~~~-g~~V~~~~r~~   35 (320)
T 3i83_A            4 NILVIGTGAIGSFYGALLAKT-GHCVSVVSRSD   35 (320)
T ss_dssp             EEEEESCCHHHHHHHHHHHHT-TCEEEEECSTT
T ss_pred             EEEEECcCHHHHHHHHHHHhC-CCeEEEEeCCh
Confidence            699999999999999999999 99999999874

>2gv8_A Monooxygenase; FMO, FAD, NADPH, cofactor complex, PSI, structura genomics, protein structure initiative; HET: FAD NDP; 2.10A {Schizosaccharomyces pombe} SCOP: c.3.1.5 c.3.1.5 PDB: 2gvc_A* 1vqw_A*

Probab=92.42  E-value=0.092  Score=57.11  Aligned_cols=35  Identities=20%  Similarity=0.356  Sum_probs=31.9

Q ss_pred             ccEEEECCcHHHHHHHHHHHhcCCCc-EEEEccCCCC
Q psy14408        434 FDIIIVGASAAGCVLANRLSEVSSLK-VLLIEAGGDT  469 (720)
Q Consensus       434 yDVVIIGSGiAGLvAA~~LAea~G~K-VLVLEKG~~~  469 (720)
                      -+|||||+|..|+-+|..|++. |.+ |+|++++...
T Consensus       213 k~VvVvG~G~sg~e~A~~l~~~-~~~~V~l~~r~~~~  248 (447)
T 2gv8_A          213 ESVLVVGGASSANDLVRHLTPV-AKHPIYQSLLGGGD  248 (447)
T ss_dssp             CCEEEECSSHHHHHHHHHHTTT-SCSSEEEECTTCCS
T ss_pred             CEEEEEccCcCHHHHHHHHHHH-hCCcEEEEeCCCCc
Confidence            3899999999999999999999 999 9999998643

>2cdu_A NADPH oxidase; flavoenzyme, oxidoreductase; HET: FAD ADP; 1.8A {Lactobacillus sanfranciscensis}

Probab=92.31  E-value=0.098  Score=56.95  Aligned_cols=34  Identities=29%  Similarity=0.392  Sum_probs=31.8

Q ss_pred             cEEEECCcHHHHHHHHHHHhcCCCcEEEEccCCCC
Q psy14408        435 DIIIVGASAAGCVLANRLSEVSSLKVLLIEAGGDT  469 (720)
Q Consensus       435 DVVIIGSGiAGLvAA~~LAea~G~KVLVLEKG~~~  469 (720)
                      .|+|||+|..|+-+|..|++. |.+|+|+|++...
T Consensus       151 ~vvViGgG~~g~E~A~~l~~~-g~~Vtlv~~~~~~  184 (452)
T 2cdu_A          151 TITIIGSGYIGAELAEAYSNQ-NYNVNLIDGHERV  184 (452)
T ss_dssp             EEEEECCSHHHHHHHHHHHTT-TCEEEEEESSSST
T ss_pred             eEEEECcCHHHHHHHHHHHhc-CCEEEEEEcCCch
Confidence            799999999999999999999 9999999998654

>1trb_A Thioredoxin reductase; oxidoreductase(flavoenzyme); HET: FAD; 2.00A {Escherichia coli} SCOP: c.3.1.5 c.3.1.5 PDB: 1cl0_A* 1f6m_A* 1tdf_A* 1tde_A*

Probab=92.15  E-value=0.1  Score=53.02  Aligned_cols=35  Identities=20%  Similarity=0.233  Sum_probs=32.1

Q ss_pred             ccEEEECCcHHHHHHHHHHHhcCCCcEEEEccCCCC
Q psy14408        434 FDIIIVGASAAGCVLANRLSEVSSLKVLLIEAGGDT  469 (720)
Q Consensus       434 yDVVIIGSGiAGLvAA~~LAea~G~KVLVLEKG~~~  469 (720)
                      -.|+|||+|..|+-+|..|++. |.+|+|+++....
T Consensus       146 ~~v~ViG~G~~g~e~A~~l~~~-g~~Vtlv~~~~~~  180 (320)
T 1trb_A          146 QKVAVIGGGNTAVEEALYLSNI-ASEVHLIHRRDGF  180 (320)
T ss_dssp             SEEEEECSSHHHHHHHHHHTTT-SSEEEEECSSSSC
T ss_pred             CeEEEECCCHHHHHHHHHHHhc-CCeEEEEEeCCcc
Confidence            3799999999999999999999 9999999998654

>3hn2_A 2-dehydropantoate 2-reductase; PSI-2, NYSGXRC, structural GE protein structure initiative; 2.50A {Geobacter metallireducens}

Probab=92.14  E-value=0.1  Score=54.36  Aligned_cols=32  Identities=28%  Similarity=0.279  Sum_probs=30.3

Q ss_pred             cEEEECCcHHHHHHHHHHHhcCCCcEEEEccCC
Q psy14408        435 DIIIVGASAAGCVLANRLSEVSSLKVLLIEAGG  467 (720)
Q Consensus       435 DVVIIGSGiAGLvAA~~LAea~G~KVLVLEKG~  467 (720)
                      .|.|||+|..|...|..|+++ |++|++++|..
T Consensus         4 kI~IiGaGaiG~~~a~~L~~~-g~~V~~~~r~~   35 (312)
T 3hn2_A            4 RIAIVGAGALGLYYGALLQRS-GEDVHFLLRRD   35 (312)
T ss_dssp             CEEEECCSTTHHHHHHHHHHT-SCCEEEECSTT
T ss_pred             EEEEECcCHHHHHHHHHHHHC-CCeEEEEEcCc
Confidence            699999999999999999999 99999999974

>2ew2_A 2-dehydropantoate 2-reductase, putative; alpha-structure, alpha-beta structure, structural genomics, protein structure initiative; HET: MSE; 2.00A {Enterococcus faecalis}

Probab=92.04  E-value=0.12  Score=52.77  Aligned_cols=31  Identities=35%  Similarity=0.349  Sum_probs=29.5

Q ss_pred             cEEEECCcHHHHHHHHHHHhcCCCcEEEEccC
Q psy14408        435 DIIIVGASAAGCVLANRLSEVSSLKVLLIEAG  466 (720)
Q Consensus       435 DVVIIGSGiAGLvAA~~LAea~G~KVLVLEKG  466 (720)
                      .|.|||+|..|...|..|+++ |++|++++|.
T Consensus         5 ~i~iiG~G~~G~~~a~~l~~~-g~~V~~~~r~   35 (316)
T 2ew2_A            5 KIAIAGAGAMGSRLGIMLHQG-GNDVTLIDQW   35 (316)
T ss_dssp             EEEEECCSHHHHHHHHHHHHT-TCEEEEECSC
T ss_pred             eEEEECcCHHHHHHHHHHHhC-CCcEEEEECC
Confidence            599999999999999999999 9999999985

>3urh_A Dihydrolipoyl dehydrogenase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium; HET: FAD; 1.90A {Sinorhizobium meliloti}

Probab=91.99  E-value=0.11  Score=57.20  Aligned_cols=34  Identities=24%  Similarity=0.347  Sum_probs=32.0

Q ss_pred             cEEEECCcHHHHHHHHHHHhcCCCcEEEEccCCCC
Q psy14408        435 DIIIVGASAAGCVLANRLSEVSSLKVLLIEAGGDT  469 (720)
Q Consensus       435 DVVIIGSGiAGLvAA~~LAea~G~KVLVLEKG~~~  469 (720)
                      .|+|||+|..|+-+|..|++. |.+|+|+|++...
T Consensus       200 ~vvViGgG~~g~E~A~~l~~~-g~~Vtlv~~~~~~  233 (491)
T 3urh_A          200 SMIVVGGGVIGLELGSVWARL-GAKVTVVEFLDTI  233 (491)
T ss_dssp             EEEEECCSHHHHHHHHHHHHH-TCEEEEECSSSSS
T ss_pred             eEEEECCCHHHHHHHHHHHHc-CCEEEEEeccccc
Confidence            799999999999999999999 9999999998755

>3ghy_A Ketopantoate reductase protein; oxidoreductase, NAD-binding domain, PSI-2, NYSGXRC, structur genomics, protein structure initiative; 2.00A {Ralstonia solanacearum}

Probab=91.89  E-value=0.14  Score=53.97  Aligned_cols=31  Identities=35%  Similarity=0.481  Sum_probs=29.7

Q ss_pred             cEEEECCcHHHHHHHHHHHhcCCCcEEEEccC
Q psy14408        435 DIIIVGASAAGCVLANRLSEVSSLKVLLIEAG  466 (720)
Q Consensus       435 DVVIIGSGiAGLvAA~~LAea~G~KVLVLEKG  466 (720)
                      .|.|||+|..|...|..|+++ |++|++++|.
T Consensus         5 kI~IiGaG~~G~~~a~~L~~~-g~~V~~~~r~   35 (335)
T 3ghy_A            5 RICIVGAGAVGGYLGARLALA-GEAINVLARG   35 (335)
T ss_dssp             CEEEESCCHHHHHHHHHHHHT-TCCEEEECCH
T ss_pred             EEEEECcCHHHHHHHHHHHHC-CCEEEEEECh
Confidence            699999999999999999999 9999999985

>3ntd_A FAD-dependent pyridine nucleotide-disulphide oxidoreductase; COA, persulfide reductase, rhodanese; HET: COA FAD; 1.99A {Shewanella loihica} PDB: 3nta_A* 3nt6_A*

Probab=91.88  E-value=0.12  Score=57.79  Aligned_cols=34  Identities=21%  Similarity=0.371  Sum_probs=31.9

Q ss_pred             cEEEECCcHHHHHHHHHHHhcCCCcEEEEccCCCC
Q psy14408        435 DIIIVGASAAGCVLANRLSEVSSLKVLLIEAGGDT  469 (720)
Q Consensus       435 DVVIIGSGiAGLvAA~~LAea~G~KVLVLEKG~~~  469 (720)
                      .|||||+|..|+-+|..|++. |.+|+|+|++...
T Consensus       153 ~vvViGgG~~g~e~A~~l~~~-g~~Vtlv~~~~~~  186 (565)
T 3ntd_A          153 HATVVGGGFIGLEMMESLHHL-GIKTTLLELADQV  186 (565)
T ss_dssp             EEEEECCSHHHHHHHHHHHHT-TCEEEEEESSSSS
T ss_pred             EEEEECCCHHHHHHHHHHHhc-CCcEEEEEcCCcc
Confidence            799999999999999999999 9999999998654

>3c85_A Putative glutathione-regulated potassium-efflux S protein KEFB; TRKA domain; HET: AMP; 1.90A {Vibrio parahaemolyticus rimd 2210633}

Probab=91.88  E-value=0.11  Score=49.39  Aligned_cols=32  Identities=22%  Similarity=0.210  Sum_probs=28.8

Q ss_pred             cEEEECCcHHHHHHHHHHHhcCCCcEEEEccC
Q psy14408        435 DIIIVGASAAGCVLANRLSEVSSLKVLLIEAG  466 (720)
Q Consensus       435 DVVIIGSGiAGLvAA~~LAea~G~KVLVLEKG  466 (720)
                      .|+|||+|..|..+|..|.+..|++|+++|+.
T Consensus        41 ~v~IiG~G~~G~~~a~~L~~~~g~~V~vid~~   72 (183)
T 3c85_A           41 QVLILGMGRIGTGAYDELRARYGKISLGIEIR   72 (183)
T ss_dssp             SEEEECCSHHHHHHHHHHHHHHCSCEEEEESC
T ss_pred             cEEEECCCHHHHHHHHHHHhccCCeEEEEECC
Confidence            69999999999999999987427999999986

>2a87_A TRXR, TR, thioredoxin reductase; FAD, NAP, NMA, TLS, oxidoreduct structural genomics, PSI, protein structure initiative; HET: FAD NAP; 3.00A {Mycobacterium tuberculosis}

Probab=91.86  E-value=0.12  Score=53.51  Aligned_cols=35  Identities=20%  Similarity=0.268  Sum_probs=32.1

Q ss_pred             ccEEEECCcHHHHHHHHHHHhcCCCcEEEEccCCCC
Q psy14408        434 FDIIIVGASAAGCVLANRLSEVSSLKVLLIEAGGDT  469 (720)
Q Consensus       434 yDVVIIGSGiAGLvAA~~LAea~G~KVLVLEKG~~~  469 (720)
                      -.|+|||+|..|+-+|..|++. |.+|+|++++...
T Consensus       156 ~~v~ViG~G~~g~e~a~~l~~~-g~~V~l~~~~~~~  190 (335)
T 2a87_A          156 QDIAVIGGGDSAMEEATFLTRF-ARSVTLVHRRDEF  190 (335)
T ss_dssp             CEEEEECSSHHHHHHHHHHTTT-CSEEEEECSSSSC
T ss_pred             CEEEEECCCHHHHHHHHHHHHh-CCeEEEEEcCCcC
Confidence            3799999999999999999999 9999999998654

>2x8g_A Thioredoxin glutathione reductase; redox-active center, detoxification pathway, oxidoreductase, flavoprotein; HET: FAD PG4; 1.90A {Schistosoma mansoni} PDB: 2x8c_A* 2x8h_A* 2x99_A* 3h4k_A* 2v6o_A*

Probab=91.86  E-value=0.12  Score=58.59  Aligned_cols=31  Identities=19%  Similarity=0.229  Sum_probs=30.0

Q ss_pred             cEEEECCcHHHHHHHHHHHhcCCCcEEEEccC
Q psy14408        435 DIIIVGASAAGCVLANRLSEVSSLKVLLIEAG  466 (720)
Q Consensus       435 DVVIIGSGiAGLvAA~~LAea~G~KVLVLEKG  466 (720)
                      .|||||||..|+-+|..|++. |.+|+|+|++
T Consensus       288 ~vvViGgG~~g~E~A~~l~~~-g~~Vtlv~~~  318 (598)
T 2x8g_A          288 KTLVIGASYVALECAGFLASL-GGDVTVMVRS  318 (598)
T ss_dssp             SEEEECCSHHHHHHHHHHHHT-TCCEEEEESS
T ss_pred             EEEEECCCHHHHHHHHHHHHc-CCEEEEEECC
Confidence            699999999999999999999 9999999997

>2xve_A Flavin-containing monooxygenase; oxidoreductase; HET: FAD; 1.99A {Methylophaga aminisulfidivorans} PDB: 2xvf_A* 2xvh_A* 2xvi_A* 2xvj_A* 2xlt_A* 2vqb_A* 2vq7_A* 2xlu_A* 2xlp_A* 2xls_A* 2xlr_A*

Probab=91.83  E-value=0.11  Score=57.17  Aligned_cols=34  Identities=15%  Similarity=0.160  Sum_probs=31.6

Q ss_pred             cEEEECCcHHHHHHHHHHHhcCCCcEEEEccCCCC
Q psy14408        435 DIIIVGASAAGCVLANRLSEVSSLKVLLIEAGGDT  469 (720)
Q Consensus       435 DVVIIGSGiAGLvAA~~LAea~G~KVLVLEKG~~~  469 (720)
                      .|||||+|..|+=+|..|++. |.+|+|+++....
T Consensus       199 ~VvVVG~G~sg~eiA~~l~~~-g~~V~li~~~~~~  232 (464)
T 2xve_A          199 TVLLVGSSYSAEDIGSQCYKY-GAKKLISCYRTAP  232 (464)
T ss_dssp             EEEEECCSTTHHHHHHHHHHT-TCSEEEEECSSCC
T ss_pred             EEEEEcCCCCHHHHHHHHHHh-CCeEEEEEECCCC
Confidence            799999999999999999999 9999999987553

>3fg2_P Putative rubredoxin reductase; ferredoxin reductase, RPA3782, F flavoprotein, oxidoreductase; HET: FAD; 2.20A {Rhodopseudomonas palustris}

Probab=91.81  E-value=0.13  Score=55.09  Aligned_cols=34  Identities=21%  Similarity=0.335  Sum_probs=32.0

Q ss_pred             cEEEECCcHHHHHHHHHHHhcCCCcEEEEccCCCC
Q psy14408        435 DIIIVGASAAGCVLANRLSEVSSLKVLLIEAGGDT  469 (720)
Q Consensus       435 DVVIIGSGiAGLvAA~~LAea~G~KVLVLEKG~~~  469 (720)
                      .|+|||+|..|+-+|..|++. |.+|+|+|+....
T Consensus       144 ~vvViGgG~~g~e~A~~l~~~-g~~Vtvv~~~~~~  177 (404)
T 3fg2_P          144 HVVVIGAGFIGLEFAATARAK-GLEVDVVELAPRV  177 (404)
T ss_dssp             EEEEECCSHHHHHHHHHHHHT-TCEEEEECSSSST
T ss_pred             eEEEECCCHHHHHHHHHHHhC-CCEEEEEeCCCcc
Confidence            799999999999999999999 9999999998655

>3itj_A Thioredoxin reductase 1; disulfide B flavoprotein, NADP, oxidoreductase, phosphoprotein, redox-A center; HET: FAD CIT; 2.40A {Saccharomyces cerevisiae} PDB: 3d8x_A*

Probab=91.75  E-value=0.12  Score=52.58  Aligned_cols=35  Identities=17%  Similarity=0.320  Sum_probs=32.2

Q ss_pred             ccEEEECCcHHHHHHHHHHHhcCCCcEEEEccCCCC
Q psy14408        434 FDIIIVGASAAGCVLANRLSEVSSLKVLLIEAGGDT  469 (720)
Q Consensus       434 yDVVIIGSGiAGLvAA~~LAea~G~KVLVLEKG~~~  469 (720)
                      -.|+|||+|..|+-+|..|++. |.+|+|++++...
T Consensus       174 ~~v~vvG~G~~g~e~a~~l~~~-g~~v~~v~~~~~~  208 (338)
T 3itj_A          174 KPLAVIGGGDSACEEAQFLTKY-GSKVFMLVRKDHL  208 (338)
T ss_dssp             SEEEEECSSHHHHHHHHHHTTT-SSEEEEECSSSSC
T ss_pred             CEEEEECCCHHHHHHHHHHHhc-CCEEEEEEcCCcc
Confidence            3799999999999999999999 9999999998654

>1jw9_B Molybdopterin biosynthesis MOEB protein; MOEB: modified rossmann fold, (2) Cys-X-X-Cys zinc-binding M MOAD: ubiquitin-like fold; 1.70A {Escherichia coli} SCOP: c.111.1.1 PDB: 1jwa_B* 1jwb_B*

Probab=91.74  E-value=0.13  Score=52.34  Aligned_cols=34  Identities=21%  Similarity=0.434  Sum_probs=30.8

Q ss_pred             cccEEEECCcHHHHHHHHHHHhcCCC-cEEEEccCC
Q psy14408        433 CFDIIIVGASAAGCVLANRLSEVSSL-KVLLIEAGG  467 (720)
Q Consensus       433 eyDVVIIGSGiAGLvAA~~LAea~G~-KVLVLEKG~  467 (720)
                      ...|+|||+|-.|..+|..|++. |. +++|+|+..
T Consensus        31 ~~~VlVvG~Gg~G~~va~~La~~-Gv~~i~lvD~d~   65 (249)
T 1jw9_B           31 DSRVLIVGLGGLGCAASQYLASA-GVGNLTLLDFDT   65 (249)
T ss_dssp             HCEEEEECCSHHHHHHHHHHHHH-TCSEEEEECCCB
T ss_pred             CCeEEEEeeCHHHHHHHHHHHHc-CCCeEEEEcCCC
Confidence            45899999999999999999999 97 899999874

>3gwf_A Cyclohexanone monooxygenase; flavoprotein biocatalysis baeyer-villiger oxidation green CH monooxygenase, oxidoreductase; HET: FAD NAP; 2.20A {Rhodococcus SP} PDB: 3gwd_A* 3ucl_A*

Probab=91.72  E-value=0.11  Score=58.72  Aligned_cols=35  Identities=9%  Similarity=0.109  Sum_probs=32.3

Q ss_pred             ccEEEECCcHHHHHHHHHHHhcCCCcEEEEccCCCC
Q psy14408        434 FDIIIVGASAAGCVLANRLSEVSSLKVLLIEAGGDT  469 (720)
Q Consensus       434 yDVVIIGSGiAGLvAA~~LAea~G~KVLVLEKG~~~  469 (720)
                      -.|+|||+|..|+-+|..|++. |.+|+|++|.+.+
T Consensus       179 krV~VIG~G~sgve~a~~l~~~-~~~Vtv~~r~~~~  213 (540)
T 3gwf_A          179 RRVGVIGTGSTGQQVITSLAPE-VEHLTVFVRTPQY  213 (540)
T ss_dssp             SEEEEECCSHHHHHHHHHHTTT-CSEEEEEESSCCC
T ss_pred             ceEEEECCCchHHHHHHHHHhh-CCEEEEEECCCCc
Confidence            3899999999999999999999 9999999998653

>3lxd_A FAD-dependent pyridine nucleotide-disulphide oxidoreductase; glutathione reductase (GR)-like ONFR; HET: FAD; 2.50A {Novosphingobium aromaticivorans}

Probab=91.71  E-value=0.14  Score=55.06  Aligned_cols=34  Identities=24%  Similarity=0.351  Sum_probs=32.0

Q ss_pred             cEEEECCcHHHHHHHHHHHhcCCCcEEEEccCCCC
Q psy14408        435 DIIIVGASAAGCVLANRLSEVSSLKVLLIEAGGDT  469 (720)
Q Consensus       435 DVVIIGSGiAGLvAA~~LAea~G~KVLVLEKG~~~  469 (720)
                      .|+|||+|..|+-+|..|++. |.+|+|+|+....
T Consensus       154 ~vvViGgG~~g~e~A~~l~~~-g~~Vtvv~~~~~~  187 (415)
T 3lxd_A          154 NAVVIGGGYIGLEAAAVLTKF-GVNVTLLEALPRV  187 (415)
T ss_dssp             EEEEECCSHHHHHHHHHHHHT-TCEEEEEESSSST
T ss_pred             eEEEECCCHHHHHHHHHHHhc-CCeEEEEecCCch
Confidence            799999999999999999999 9999999998655

>2y0c_A BCEC, UDP-glucose dehydrogenase; oxidoreductase, carbohydrate synthesis, exopolysaccharide, C fibrosis; HET: UGA; 1.75A {Burkholderia cepacia} PDB: 2y0d_A* 2y0e_A*

Probab=91.70  E-value=0.12  Score=57.60  Aligned_cols=32  Identities=19%  Similarity=0.492  Sum_probs=30.0

Q ss_pred             ccEEEECCcHHHHHHHHHHHhcCCCcEEEEccC
Q psy14408        434 FDIIIVGASAAGCVLANRLSEVSSLKVLLIEAG  466 (720)
Q Consensus       434 yDVVIIGSGiAGLvAA~~LAea~G~KVLVLEKG  466 (720)
                      ..|.|||+|..|+..|..||++ |++|+++|+.
T Consensus         9 ~~I~VIG~G~vG~~lA~~la~~-G~~V~~~d~~   40 (478)
T 2y0c_A            9 MNLTIIGSGSVGLVTGACLADI-GHDVFCLDVD   40 (478)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHT-TCEEEEECSC
T ss_pred             ceEEEECcCHHHHHHHHHHHhC-CCEEEEEECC
Confidence            4799999999999999999999 9999999974

>2raf_A Putative dinucleotide-binding oxidoreductase; NP_786167.1, NADP oxidoreductase coenzyme F420-dependent, structural genomics; HET: MSE NAP; 1.60A {Lactobacillus plantarum WCFS1}

Probab=91.65  E-value=0.16  Score=49.98  Aligned_cols=33  Identities=15%  Similarity=0.262  Sum_probs=30.7

Q ss_pred             cEEEECCcHHHHHHHHHHHhcCCCcEEEEccCCC
Q psy14408        435 DIIIVGASAAGCVLANRLSEVSSLKVLLIEAGGD  468 (720)
Q Consensus       435 DVVIIGSGiAGLvAA~~LAea~G~KVLVLEKG~~  468 (720)
                      .|.|||+|..|.+.|..|+++ |++|++++|...
T Consensus        21 ~I~iiG~G~mG~~la~~l~~~-g~~V~~~~~~~~   53 (209)
T 2raf_A           21 EITIFGKGNMGQAIGHNFEIA-GHEVTYYGSKDQ   53 (209)
T ss_dssp             EEEEECCSHHHHHHHHHHHHT-TCEEEEECTTCC
T ss_pred             EEEEECCCHHHHHHHHHHHHC-CCEEEEEcCCHH
Confidence            699999999999999999999 999999998743

>3g17_A Similar to 2-dehydropantoate 2-reductase; structural genomics, putative 2-dehydropantoate 2-reductase, protein structure initiative; 2.30A {Staphylococcus aureus subsp}

Probab=91.61  E-value=0.12  Score=53.43  Aligned_cols=32  Identities=25%  Similarity=0.371  Sum_probs=30.2

Q ss_pred             cEEEECCcHHHHHHHHHHHhcCCCcEEEEccCC
Q psy14408        435 DIIIVGASAAGCVLANRLSEVSSLKVLLIEAGG  467 (720)
Q Consensus       435 DVVIIGSGiAGLvAA~~LAea~G~KVLVLEKG~  467 (720)
                      .|.|||+|..|...|..|+++ |++|++++|..
T Consensus         4 kI~iiGaGa~G~~~a~~L~~~-g~~V~~~~r~~   35 (294)
T 3g17_A            4 SVAIIGPGAVGTTIAYELQQS-LPHTTLIGRHA   35 (294)
T ss_dssp             CEEEECCSHHHHHHHHHHHHH-CTTCEEEESSC
T ss_pred             EEEEECCCHHHHHHHHHHHHC-CCeEEEEEecc
Confidence            699999999999999999999 99999999873

>4ap3_A Steroid monooxygenase; oxidoreductase, baeyer-villiger; HET: FAD NAP; 2.39A {Rhodococcus rhodochrous} PDB: 4aox_A* 4aos_A* 4ap1_A*

Probab=91.51  E-value=0.13  Score=58.21  Aligned_cols=35  Identities=9%  Similarity=0.226  Sum_probs=32.3

Q ss_pred             ccEEEECCcHHHHHHHHHHHhcCCCcEEEEccCCCC
Q psy14408        434 FDIIIVGASAAGCVLANRLSEVSSLKVLLIEAGGDT  469 (720)
Q Consensus       434 yDVVIIGSGiAGLvAA~~LAea~G~KVLVLEKG~~~  469 (720)
                      -.|+|||+|..|+-+|..|++. |.+|+|++|.+..
T Consensus       192 krV~VIG~G~sgve~a~~l~~~-~~~Vtv~~r~~~~  226 (549)
T 4ap3_A          192 KRVGVIGTGSSGIQSIPIIAEQ-AEQLFVFQRSANY  226 (549)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHH-BSEEEEEESSCCC
T ss_pred             CEEEEECCCchHHHHHHHHHhh-CCEEEEEECCCCc
Confidence            3899999999999999999999 9999999998653

>1lld_A L-lactate dehydrogenase; oxidoreductase(CHOH (D)-NAD (A)); HET: NAD; 2.00A {Bifidobacterium longum subsp} SCOP: c.2.1.5 d.162.1.1 PDB: 1lth_T*

Probab=91.41  E-value=0.15  Score=52.88  Aligned_cols=32  Identities=22%  Similarity=0.433  Sum_probs=29.9

Q ss_pred             cEEEECCcHHHHHHHHHHHhcCCC--cEEEEccCC
Q psy14408        435 DIIIVGASAAGCVLANRLSEVSSL--KVLLIEAGG  467 (720)
Q Consensus       435 DVVIIGSGiAGLvAA~~LAea~G~--KVLVLEKG~  467 (720)
                      .|+|||+|..|...|..|+++ |+  +|+++|+..
T Consensus         9 kI~IiGaG~vG~~~a~~l~~~-g~~~~V~l~d~~~   42 (319)
T 1lld_A            9 KLAVIGAGAVGSTLAFAAAQR-GIAREIVLEDIAK   42 (319)
T ss_dssp             EEEEECCSHHHHHHHHHHHHT-TCCSEEEEECSSH
T ss_pred             EEEEECCCHHHHHHHHHHHhC-CCCCEEEEEeCCh
Confidence            699999999999999999999 98  999999863

>3dfz_A SIRC, precorrin-2 dehydrogenase; NAD dehydrogenase, cobalamin biosynthesis, NAD, oxidoreducta porphyrin biosynthesis; 2.30A {Bacillus megaterium}

Probab=91.38  E-value=0.14  Score=51.74  Aligned_cols=33  Identities=6%  Similarity=0.146  Sum_probs=30.5

Q ss_pred             cccEEEECCcHHHHHHHHHHHhcCCCcEEEEccC
Q psy14408        433 CFDIIIVGASAAGCVLANRLSEVSSLKVLLIEAG  466 (720)
Q Consensus       433 eyDVVIIGSGiAGLvAA~~LAea~G~KVLVLEKG  466 (720)
                      .--|+|||||-.|...|..|.++ |.+|+|++..
T Consensus        31 gk~VLVVGgG~va~~ka~~Ll~~-GA~VtVvap~   63 (223)
T 3dfz_A           31 GRSVLVVGGGTIATRRIKGFLQE-GAAITVVAPT   63 (223)
T ss_dssp             TCCEEEECCSHHHHHHHHHHGGG-CCCEEEECSS
T ss_pred             CCEEEEECCCHHHHHHHHHHHHC-CCEEEEECCC
Confidence            34899999999999999999999 9999999864

>3uox_A Otemo; baeyer-villiger monooxygenase, oxidoreductase; HET: FAD; 1.96A {Pseudomonas putida} PDB: 3uov_A* 3uoy_A* 3uoz_A* 3up4_A* 3up5_A*

Probab=91.38  E-value=0.11  Score=58.59  Aligned_cols=35  Identities=11%  Similarity=0.202  Sum_probs=32.4

Q ss_pred             ccEEEECCcHHHHHHHHHHHhcCCCcEEEEccCCCC
Q psy14408        434 FDIIIVGASAAGCVLANRLSEVSSLKVLLIEAGGDT  469 (720)
Q Consensus       434 yDVVIIGSGiAGLvAA~~LAea~G~KVLVLEKG~~~  469 (720)
                      -.|+|||+|..|+-+|..|++. |.+|+|++|.+..
T Consensus       186 krV~VIG~G~tgve~a~~la~~-~~~Vtv~~r~~~~  220 (545)
T 3uox_A          186 KRVGVIGTGATGVQIIPIAAET-AKELYVFQRTPNW  220 (545)
T ss_dssp             CEEEEECCSHHHHHHHHHHTTT-BSEEEEEESSCCC
T ss_pred             CeEEEECCCccHHHHHHHHHhh-CCEEEEEEcCCCc
Confidence            3799999999999999999999 9999999998753

>3l8k_A Dihydrolipoyl dehydrogenase; redox-active center, structural genomics, PSI-2, protein structure initiative; HET: ADP; 2.50A {Sulfolobus solfataricus}

Probab=91.33  E-value=0.16  Score=55.67  Aligned_cols=34  Identities=24%  Similarity=0.382  Sum_probs=32.0

Q ss_pred             cEEEECCcHHHHHHHHHHHhcCCCcEEEEccCCCC
Q psy14408        435 DIIIVGASAAGCVLANRLSEVSSLKVLLIEAGGDT  469 (720)
Q Consensus       435 DVVIIGSGiAGLvAA~~LAea~G~KVLVLEKG~~~  469 (720)
                      .|+|||+|..|+-+|..|++. |.+|+|+|++...
T Consensus       174 ~vvViGgG~~g~e~A~~l~~~-g~~Vtlv~~~~~~  207 (466)
T 3l8k_A          174 DMVIIGAGYIGLEIASIFRLM-GVQTHIIEMLDRA  207 (466)
T ss_dssp             EEEEECCSHHHHHHHHHHHHT-TCEEEEECSSSSS
T ss_pred             eEEEECCCHHHHHHHHHHHHc-CCEEEEEEeCCcC
Confidence            799999999999999999999 9999999998654

>3f8d_A Thioredoxin reductase (TRXB-3); redox protein, nucleotide binding, FAD, flavoprotein, oxidoreductase; HET: FAD; 1.40A {Sulfolobus solfataricus} PDB: 3f8p_A* 3f8r_A*

Probab=91.11  E-value=0.17  Score=50.95  Aligned_cols=35  Identities=26%  Similarity=0.209  Sum_probs=32.3

Q ss_pred             ccEEEECCcHHHHHHHHHHHhcCCCcEEEEccCCCC
Q psy14408        434 FDIIIVGASAAGCVLANRLSEVSSLKVLLIEAGGDT  469 (720)
Q Consensus       434 yDVVIIGSGiAGLvAA~~LAea~G~KVLVLEKG~~~  469 (720)
                      -.|+|||+|..|+-+|..|++. |.+|+|++++...
T Consensus       155 ~~v~vvG~G~~~~e~a~~l~~~-g~~v~~~~~~~~~  189 (323)
T 3f8d_A          155 RVVAVIGGGDSALEGAEILSSY-STKVYLIHRRDTF  189 (323)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHH-SSEEEEECSSSSC
T ss_pred             CEEEEECCCHHHHHHHHHHHHh-CCeEEEEEeCCCC
Confidence            3899999999999999999999 9999999998654

>3oc4_A Oxidoreductase, pyridine nucleotide-disulfide FAM; structural genomics, PSI-2, protein structure initiative; HET: FAD; 2.60A {Enterococcus faecalis}

Probab=91.08  E-value=0.16  Score=55.26  Aligned_cols=34  Identities=18%  Similarity=0.264  Sum_probs=32.0

Q ss_pred             cEEEECCcHHHHHHHHHHHhcCCCcEEEEccCCCC
Q psy14408        435 DIIIVGASAAGCVLANRLSEVSSLKVLLIEAGGDT  469 (720)
Q Consensus       435 DVVIIGSGiAGLvAA~~LAea~G~KVLVLEKG~~~  469 (720)
                      .|+|||+|..|+-+|..|++. |.+|+|+|++...
T Consensus       149 ~vvViGgG~~g~E~A~~l~~~-g~~Vtlv~~~~~~  182 (452)
T 3oc4_A          149 TVAVIGAGPIGMEAIDFLVKM-KKTVHVFESLENL  182 (452)
T ss_dssp             EEEEECCSHHHHHHHHHHHHT-TCEEEEEESSSSS
T ss_pred             EEEEECCCHHHHHHHHHHHhC-CCeEEEEEccCcc
Confidence            799999999999999999999 9999999998654

>3ab1_A Ferredoxin--NADP reductase; oxidoreductase, electron transport, FAD, flavoprotein; HET: FAD; 2.39A {Chlorobaculum tepidum}

Probab=91.05  E-value=0.13  Score=53.68  Aligned_cols=34  Identities=21%  Similarity=0.299  Sum_probs=31.7

Q ss_pred             cEEEECCcHHHHHHHHHHHhcCCCcEEEEccCCCC
Q psy14408        435 DIIIVGASAAGCVLANRLSEVSSLKVLLIEAGGDT  469 (720)
Q Consensus       435 DVVIIGSGiAGLvAA~~LAea~G~KVLVLEKG~~~  469 (720)
                      .|+|||+|..|+-+|..|++. |.+|+|++++...
T Consensus       165 ~vvVvG~G~~g~e~A~~l~~~-g~~V~lv~~~~~~  198 (360)
T 3ab1_A          165 RVVIVGGGDSALDWTVGLIKN-AASVTLVHRGHEF  198 (360)
T ss_dssp             EEEEECSSHHHHHHHHHTTTT-SSEEEEECSSSSC
T ss_pred             cEEEECCCHHHHHHHHHHHhc-CCEEEEEEcCCCC
Confidence            799999999999999999999 9999999998654

>1kyq_A Met8P, siroheme biosynthesis protein Met8; homodimer, oxidoreductase, lyase; HET: NAD; 2.20A {Saccharomyces cerevisiae} SCOP: c.2.1.11 e.37.1.1

Probab=91.04  E-value=0.11  Score=54.09  Aligned_cols=33  Identities=18%  Similarity=0.281  Sum_probs=30.4

Q ss_pred             ccEEEECCcHHHHHHHHHHHhcCCCcEEEEccCC
Q psy14408        434 FDIIIVGASAAGCVLANRLSEVSSLKVLLIEAGG  467 (720)
Q Consensus       434 yDVVIIGSGiAGLvAA~~LAea~G~KVLVLEKG~  467 (720)
                      --|||||+|-.|+..|..|.+. |++|+|++...
T Consensus        14 k~VLVVGgG~va~rka~~Ll~~-Ga~VtViap~~   46 (274)
T 1kyq_A           14 KRILLIGGGEVGLTRLYKLMPT-GCKLTLVSPDL   46 (274)
T ss_dssp             CEEEEEEESHHHHHHHHHHGGG-TCEEEEEEEEE
T ss_pred             CEEEEECCcHHHHHHHHHHHhC-CCEEEEEcCCC
Confidence            3799999999999999999999 99999999753

>1txg_A Glycerol-3-phosphate dehydrogenase [NAD(P)+]; oxidoreductase; 1.70A {Archaeoglobus fulgidus} SCOP: a.100.1.6 c.2.1.6

Probab=90.99  E-value=0.16  Score=52.57  Aligned_cols=30  Identities=27%  Similarity=0.305  Sum_probs=28.6

Q ss_pred             cEEEECCcHHHHHHHHHHHhcCCCcEEEEcc
Q psy14408        435 DIIIVGASAAGCVLANRLSEVSSLKVLLIEA  465 (720)
Q Consensus       435 DVVIIGSGiAGLvAA~~LAea~G~KVLVLEK  465 (720)
                      .|.|||+|..|...|..|+++ |++|++++|
T Consensus         2 ~I~iiG~G~mG~~~a~~L~~~-g~~V~~~~r   31 (335)
T 1txg_A            2 IVSILGAGAMGSALSVPLVDN-GNEVRIWGT   31 (335)
T ss_dssp             EEEEESCCHHHHHHHHHHHHH-CCEEEEECC
T ss_pred             EEEEECcCHHHHHHHHHHHhC-CCeEEEEEc
Confidence            489999999999999999999 999999998

>4a7p_A UDP-glucose dehydrogenase; oxidoreductase, carbohydrate synthesis, exopolysaccharide; HET: NAD; 3.40A {Sphingomonas elodea}

Probab=90.94  E-value=0.18  Score=55.98  Aligned_cols=35  Identities=17%  Similarity=0.332  Sum_probs=32.1

Q ss_pred             cccEEEECCcHHHHHHHHHHHhcCCCcEEEEccCCC
Q psy14408        433 CFDIIIVGASAAGCVLANRLSEVSSLKVLLIEAGGD  468 (720)
Q Consensus       433 eyDVVIIGSGiAGLvAA~~LAea~G~KVLVLEKG~~  468 (720)
                      .+.+.|||.|..|+..|..||++ |++|+++|+...
T Consensus         8 ~~~~~vIGlG~vG~~~A~~La~~-G~~V~~~D~~~~   42 (446)
T 4a7p_A            8 SVRIAMIGTGYVGLVSGACFSDF-GHEVVCVDKDAR   42 (446)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHT-TCEEEEECSCST
T ss_pred             ceEEEEEcCCHHHHHHHHHHHHC-CCEEEEEeCCHH
Confidence            46899999999999999999999 999999998654

>3gg2_A Sugar dehydrogenase, UDP-glucose/GDP-mannose dehydrogenase family; structural genomics, oxidoreductase, PSI-2; HET: UGA; 1.70A {Porphyromonas gingivalis}

Probab=90.74  E-value=0.18  Score=55.92  Aligned_cols=31  Identities=32%  Similarity=0.444  Sum_probs=29.6

Q ss_pred             cEEEECCcHHHHHHHHHHHhcCCCcEEEEccC
Q psy14408        435 DIIIVGASAAGCVLANRLSEVSSLKVLLIEAG  466 (720)
Q Consensus       435 DVVIIGSGiAGLvAA~~LAea~G~KVLVLEKG  466 (720)
                      .|.|||+|..|+..|..|+++ |++|+++|+.
T Consensus         4 kI~VIG~G~vG~~lA~~La~~-G~~V~~~D~~   34 (450)
T 3gg2_A            4 DIAVVGIGYVGLVSATCFAEL-GANVRCIDTD   34 (450)
T ss_dssp             EEEEECCSHHHHHHHHHHHHT-TCEEEEECSC
T ss_pred             EEEEECcCHHHHHHHHHHHhc-CCEEEEEECC
Confidence            689999999999999999999 9999999985

>1bg6_A N-(1-D-carboxylethyl)-L-norvaline dehydrogenase; L) stereospecific opine dehydrogenase, oxidoreductase; 1.80A {Arthrobacter SP} SCOP: a.100.1.5 c.2.1.6

Probab=90.65  E-value=0.2  Score=52.42  Aligned_cols=31  Identities=19%  Similarity=0.249  Sum_probs=29.5

Q ss_pred             cEEEECCcHHHHHHHHHHHhcCCCcEEEEccC
Q psy14408        435 DIIIVGASAAGCVLANRLSEVSSLKVLLIEAG  466 (720)
Q Consensus       435 DVVIIGSGiAGLvAA~~LAea~G~KVLVLEKG  466 (720)
                      .|.|||+|..|...|..|+++ |++|++++|.
T Consensus         6 ki~iiG~G~~G~~~a~~L~~~-g~~V~~~~r~   36 (359)
T 1bg6_A            6 TYAVLGLGNGGHAFAAYLALK-GQSVLAWDID   36 (359)
T ss_dssp             EEEEECCSHHHHHHHHHHHHT-TCEEEEECSC
T ss_pred             eEEEECCCHHHHHHHHHHHhC-CCEEEEEeCC
Confidence            699999999999999999999 9999999985

>3lad_A Dihydrolipoamide dehydrogenase; oxidoreductase; HET: FAD; 2.20A {Azotobacter vinelandii} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1lpf_A*

Probab=90.63  E-value=0.2  Score=54.85  Aligned_cols=34  Identities=21%  Similarity=0.304  Sum_probs=32.0

Q ss_pred             cEEEECCcHHHHHHHHHHHhcCCCcEEEEccCCCC
Q psy14408        435 DIIIVGASAAGCVLANRLSEVSSLKVLLIEAGGDT  469 (720)
Q Consensus       435 DVVIIGSGiAGLvAA~~LAea~G~KVLVLEKG~~~  469 (720)
                      .|+|||+|..|+-+|..|++. |.+|+|+|++...
T Consensus       182 ~v~ViGgG~~g~e~A~~l~~~-g~~Vtlv~~~~~~  215 (476)
T 3lad_A          182 KLGVIGAGVIGLELGSVWARL-GAEVTVLEAMDKF  215 (476)
T ss_dssp             EEEEECCSHHHHHHHHHHHHT-TCEEEEEESSSSS
T ss_pred             eEEEECCCHHHHHHHHHHHHc-CCcEEEEecCCCc
Confidence            799999999999999999999 9999999998654

>1zcj_A Peroxisomal bifunctional enzyme; peroxisomal multifunctional enzyme type 1, L-bifunction enzyme, MFE-1, fatty acid beta oxidation; 1.90A {Rattus norvegicus}

Probab=90.57  E-value=0.18  Score=55.90  Aligned_cols=32  Identities=19%  Similarity=0.350  Sum_probs=29.8

Q ss_pred             cEEEECCcHHHHHHHHHHHhcCCCcEEEEccCC
Q psy14408        435 DIIIVGASAAGCVLANRLSEVSSLKVLLIEAGG  467 (720)
Q Consensus       435 DVVIIGSGiAGLvAA~~LAea~G~KVLVLEKG~  467 (720)
                      .|.|||+|..|...|..|+++ |++|+|+|+..
T Consensus        39 kV~VIGaG~MG~~iA~~la~~-G~~V~l~D~~~   70 (463)
T 1zcj_A           39 SVGVLGLGTMGRGIAISFARV-GISVVAVESDP   70 (463)
T ss_dssp             EEEEECCSHHHHHHHHHHHTT-TCEEEEECSSH
T ss_pred             EEEEECcCHHHHHHHHHHHhC-CCeEEEEECCH
Confidence            599999999999999999999 99999999753

>3ics_A Coenzyme A-disulfide reductase; pyridine nucleotide-disulfide oxidoreductase class I, rhodan coenzyme A, flavin adenine dinucleotide; HET: FAD COA ADP; 1.94A {Bacillus anthracis} PDB: 3icr_A* 3ict_A*

Probab=90.50  E-value=0.2  Score=56.56  Aligned_cols=34  Identities=21%  Similarity=0.414  Sum_probs=31.9

Q ss_pred             cEEEECCcHHHHHHHHHHHhcCCCcEEEEccCCCC
Q psy14408        435 DIIIVGASAAGCVLANRLSEVSSLKVLLIEAGGDT  469 (720)
Q Consensus       435 DVVIIGSGiAGLvAA~~LAea~G~KVLVLEKG~~~  469 (720)
                      .|+|||+|..|+-+|..|++. |.+|+|+|++...
T Consensus       189 ~vvViGgG~~g~e~A~~l~~~-g~~Vtlv~~~~~~  222 (588)
T 3ics_A          189 HATVIGGGFIGVEMVENLRER-GIEVTLVEMANQV  222 (588)
T ss_dssp             EEEEECCSHHHHHHHHHHHHT-TCEEEEECSSSSS
T ss_pred             eEEEECCCHHHHHHHHHHHhC-CCeEEEEecCCcc
Confidence            799999999999999999999 9999999998654

>1mo9_A ORF3; nucleotide binding motifs, nucleotide binding domain, oxidor; HET: FAD KPC; 1.65A {Xanthobacter autotrophicus} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1mok_A* 2c3c_A* 2c3d_A* 3q6j_A*

Probab=90.38  E-value=0.21  Score=55.69  Aligned_cols=35  Identities=9%  Similarity=0.176  Sum_probs=32.3

Q ss_pred             ccEEEECCcHHHHHHHHHHHhcCCCcEEEEccCCCC
Q psy14408        434 FDIIIVGASAAGCVLANRLSEVSSLKVLLIEAGGDT  469 (720)
Q Consensus       434 yDVVIIGSGiAGLvAA~~LAea~G~KVLVLEKG~~~  469 (720)
                      -.|+|||+|..|+-+|..|++. |.+|+|+|++...
T Consensus       215 ~~vvViGgG~~g~E~A~~l~~~-G~~Vtlv~~~~~~  249 (523)
T 1mo9_A          215 STVVVVGGSKTAVEYGCFFNAT-GRRTVMLVRTEPL  249 (523)
T ss_dssp             SEEEEECCSHHHHHHHHHHHHT-TCEEEEECSSCTT
T ss_pred             CeEEEECCCHHHHHHHHHHHHc-CCeEEEEEecCcc
Confidence            3799999999999999999999 9999999998654

>1mv8_A GMD, GDP-mannose 6-dehydrogenase; rossman fold, domain-swapped dimer, enzyme complex with COFA product, oxidoreductase; HET: SUC NAD GDX; 1.55A {Pseudomonas aeruginosa} SCOP: a.100.1.4 c.2.1.6 c.26.3.1 PDB: 1mfz_A* 1muu_A*

Probab=90.35  E-value=0.17  Score=55.39  Aligned_cols=31  Identities=29%  Similarity=0.338  Sum_probs=29.1

Q ss_pred             cEEEECCcHHHHHHHHHHHhcCCCcEEEEccC
Q psy14408        435 DIIIVGASAAGCVLANRLSEVSSLKVLLIEAG  466 (720)
Q Consensus       435 DVVIIGSGiAGLvAA~~LAea~G~KVLVLEKG  466 (720)
                      .|.|||+|..|+..|..|+++ |++|+++|+.
T Consensus         2 kI~VIG~G~vG~~~A~~la~~-G~~V~~~d~~   32 (436)
T 1mv8_A            2 RISIFGLGYVGAVCAGCLSAR-GHEVIGVDVS   32 (436)
T ss_dssp             EEEEECCSTTHHHHHHHHHHT-TCEEEEECSC
T ss_pred             EEEEECCCHHHHHHHHHHHHC-CCEEEEEECC
Confidence            489999999999999999999 9999999974

>3dgz_A Thioredoxin reductase 2; oxidoreductase, rossmann, flavoprotein, FAD, mitochondrion, redox-active center, selenium, selenocysteine, transit PEPT; HET: FAD NA7; 2.25A {Mus musculus} PDB: 1zkq_A* 1zdl_A*

Probab=90.19  E-value=0.22  Score=54.89  Aligned_cols=32  Identities=22%  Similarity=0.236  Sum_probs=30.3

Q ss_pred             cEEEECCcHHHHHHHHHHHhcCCCcEEEEccCC
Q psy14408        435 DIIIVGASAAGCVLANRLSEVSSLKVLLIEAGG  467 (720)
Q Consensus       435 DVVIIGSGiAGLvAA~~LAea~G~KVLVLEKG~  467 (720)
                      .|+|||+|..|+-+|..|++. |.+|+|+|+..
T Consensus       187 ~vvViGgG~ig~E~A~~l~~~-g~~Vtlv~~~~  218 (488)
T 3dgz_A          187 KTLVVGASYVALECAGFLTGI-GLDTTVMMRSI  218 (488)
T ss_dssp             SEEEECCSHHHHHHHHHHHHT-TCCEEEEESSC
T ss_pred             eEEEECCCHHHHHHHHHHHHc-CCceEEEEcCc
Confidence            699999999999999999999 99999999874

>3k6j_A Protein F01G10.3, confirmed by transcript evidenc; rossmann fold, oxidoreductase; 2.20A {Caenorhabditis elegans}

Probab=90.16  E-value=0.21  Score=55.67  Aligned_cols=32  Identities=16%  Similarity=0.332  Sum_probs=30.1

Q ss_pred             cEEEECCcHHHHHHHHHHHhcCCCcEEEEccCC
Q psy14408        435 DIIIVGASAAGCVLANRLSEVSSLKVLLIEAGG  467 (720)
Q Consensus       435 DVVIIGSGiAGLvAA~~LAea~G~KVLVLEKG~  467 (720)
                      -|.|||+|..|...|..|+++ |++|+|+|+..
T Consensus        56 kVaVIGaG~MG~~IA~~la~a-G~~V~l~D~~~   87 (460)
T 3k6j_A           56 SVAIIGGGTMGKAMAICFGLA-GIETFLVVRNE   87 (460)
T ss_dssp             EEEEECCSHHHHHHHHHHHHT-TCEEEEECSCH
T ss_pred             EEEEECCCHHHHHHHHHHHHC-CCeEEEEECcH
Confidence            699999999999999999999 99999999864

>3r9u_A Thioredoxin reductase; structural genomics, center for structural genomics of infec diseases, csgid, thioredoxin-disulfide reductase, FAD; HET: FAD; 2.36A {Campylobacter jejuni}

Probab=90.12  E-value=0.26  Score=49.63  Aligned_cols=35  Identities=17%  Similarity=0.260  Sum_probs=32.2

Q ss_pred             ccEEEECCcHHHHHHHHHHHhcCCCcEEEEccCCCC
Q psy14408        434 FDIIIVGASAAGCVLANRLSEVSSLKVLLIEAGGDT  469 (720)
Q Consensus       434 yDVVIIGSGiAGLvAA~~LAea~G~KVLVLEKG~~~  469 (720)
                      -.|+|||+|..|+-+|..|++. |.+|+|++++...
T Consensus       148 ~~v~viG~g~~~~e~a~~l~~~-g~~v~~~~~~~~~  182 (315)
T 3r9u_A          148 KEVAVLGGGDTALEEALYLANI-CSKIYLIHRRDEF  182 (315)
T ss_dssp             SEEEEECCBHHHHHHHHHHHTT-SSEEEEECSSSSC
T ss_pred             CEEEEECCCHHHHHHHHHHHhh-CCEEEEEEeCCCC
Confidence            3799999999999999999999 9999999998654

>1z82_A Glycerol-3-phosphate dehydrogenase; TM0378, structural genom joint center for structural genomics, JCSG, protein structu initiative, PSI; HET: MSE NDP G3H G3P; 2.00A {Thermotoga maritima}

Probab=90.07  E-value=0.24  Score=52.01  Aligned_cols=33  Identities=27%  Similarity=0.363  Sum_probs=30.6

Q ss_pred             cccEEEECCcHHHHHHHHHHHhcCCCcEEEEccC
Q psy14408        433 CFDIIIVGASAAGCVLANRLSEVSSLKVLLIEAG  466 (720)
Q Consensus       433 eyDVVIIGSGiAGLvAA~~LAea~G~KVLVLEKG  466 (720)
                      +..|.|||+|..|...|..|+++ |++|+|++|.
T Consensus        14 ~~kI~iIG~G~mG~ala~~L~~~-G~~V~~~~r~   46 (335)
T 1z82_A           14 EMRFFVLGAGSWGTVFAQMLHEN-GEEVILWARR   46 (335)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHT-TCEEEEECSS
T ss_pred             CCcEEEECcCHHHHHHHHHHHhC-CCeEEEEeCC
Confidence            44799999999999999999999 9999999985

>3lk7_A UDP-N-acetylmuramoylalanine--D-glutamate ligase; agalacitae, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: MSE; 1.50A {Streptococcus agalactiae}

Probab=89.99  E-value=0.2  Score=55.20  Aligned_cols=32  Identities=16%  Similarity=0.294  Sum_probs=30.2

Q ss_pred             cEEEECCcHHHHHHHHHHHhcCCCcEEEEccCC
Q psy14408        435 DIIIVGASAAGCVLANRLSEVSSLKVLLIEAGG  467 (720)
Q Consensus       435 DVVIIGSGiAGLvAA~~LAea~G~KVLVLEKG~  467 (720)
                      .|.|||.|.+|+++|..|+++ |++|++.|+..
T Consensus        11 ~v~viG~G~sG~s~A~~l~~~-G~~V~~~D~~~   42 (451)
T 3lk7_A           11 KVLVLGLARSGEAAARLLAKL-GAIVTVNDGKP   42 (451)
T ss_dssp             EEEEECCTTTHHHHHHHHHHT-TCEEEEEESSC
T ss_pred             EEEEEeeCHHHHHHHHHHHhC-CCEEEEEeCCc
Confidence            699999999999999999999 99999999864

>3ego_A Probable 2-dehydropantoate 2-reductase; structural genomics, PANE, unknown function, cytoplasm, NADP, oxidoreductase; 1.90A {Bacillus subtilis}

Probab=89.92  E-value=0.24  Score=51.69  Aligned_cols=31  Identities=26%  Similarity=0.318  Sum_probs=29.1

Q ss_pred             cEEEECCcHHHHHHHHHHHhcCCCcEEEEccCC
Q psy14408        435 DIIIVGASAAGCVLANRLSEVSSLKVLLIEAGG  467 (720)
Q Consensus       435 DVVIIGSGiAGLvAA~~LAea~G~KVLVLEKG~  467 (720)
                      .|.|||+|..|...|..|+ + |++|++++|+.
T Consensus         4 kI~IiGaGa~G~~~a~~L~-~-g~~V~~~~r~~   34 (307)
T 3ego_A            4 KIGIIGGGSVGLLCAYYLS-L-YHDVTVVTRRQ   34 (307)
T ss_dssp             EEEEECCSHHHHHHHHHHH-T-TSEEEEECSCH
T ss_pred             EEEEECCCHHHHHHHHHHh-c-CCceEEEECCH
Confidence            6999999999999999999 8 99999999864

>2x5o_A UDP-N-acetylmuramoylalanine--D-glutamate ligase; ATP-binding, cell cycle, cell division, cell shape, cell WAL biogenesis/degradation; HET: KCX VSV; 1.46A {Escherichia coli} PDB: 2wjp_A* 2xpc_A* 2y1o_A* 2jff_A* 2jfh_A* 2uuo_A* 2uup_A* 2vtd_A* 2vte_A* 2jfg_A* 2y66_A* 2y67_A* 2y68_A* 4uag_A* 1e0d_A* 1uag_A* 1eeh_A* 3uag_A* 2uag_A*

Probab=89.87  E-value=0.18  Score=55.19  Aligned_cols=34  Identities=9%  Similarity=0.215  Sum_probs=30.8

Q ss_pred             cEEEECCcHHHHHHHHHHHhcCCCcEEEEccCCCC
Q psy14408        435 DIIIVGASAAGCVLANRLSEVSSLKVLLIEAGGDT  469 (720)
Q Consensus       435 DVVIIGSGiAGLvAA~~LAea~G~KVLVLEKG~~~  469 (720)
                      -|+|||.|.+|+++|..|+++ |++|++.|.....
T Consensus         7 ~v~viG~G~~G~~~a~~l~~~-G~~v~~~D~~~~~   40 (439)
T 2x5o_A            7 NVVIIGLGLTGLSCVDFFLAR-GVTPRVMDTRMTP   40 (439)
T ss_dssp             CEEEECCHHHHHHHHHHHHTT-TCCCEEEESSSSC
T ss_pred             EEEEEeecHHHHHHHHHHHhC-CCEEEEEECCCCc
Confidence            589999999999999999999 9999999986544

>1nyt_A Shikimate 5-dehydrogenase; alpha/beta domains, WIDE cleft separation, oxidoreductase; HET: NAP; 1.50A {Escherichia coli} SCOP: c.2.1.7 c.58.1.5

Probab=89.83  E-value=0.26  Score=50.51  Aligned_cols=31  Identities=19%  Similarity=0.242  Sum_probs=29.4

Q ss_pred             cEEEECCcHHHHHHHHHHHhcCCCcEEEEccC
Q psy14408        435 DIIIVGASAAGCVLANRLSEVSSLKVLLIEAG  466 (720)
Q Consensus       435 DVVIIGSGiAGLvAA~~LAea~G~KVLVLEKG  466 (720)
                      .|+|||+|-+|..+|..|++. |.+|+|++|.
T Consensus       121 ~vlViGaGg~g~a~a~~L~~~-G~~V~v~~R~  151 (271)
T 1nyt_A          121 RILLIGAGGASRGVLLPLLSL-DCAVTITNRT  151 (271)
T ss_dssp             EEEEECCSHHHHHHHHHHHHT-TCEEEEECSS
T ss_pred             EEEEECCcHHHHHHHHHHHHc-CCEEEEEECC
Confidence            699999999999999999999 9999999886

>2vdc_G Glutamate synthase [NADPH] small chain; oxidoreductase, amidotransferase, ammonia assimilation, iron, zymogen; HET: OMT FMN AKG FAD; 9.50A {Azospirillum brasilense}

Probab=89.77  E-value=0.27  Score=54.32  Aligned_cols=35  Identities=6%  Similarity=0.048  Sum_probs=31.0

Q ss_pred             ccEEEECCcHHHHHHHHHHHhcCCCc-EEEEccCCCC
Q psy14408        434 FDIIIVGASAAGCVLANRLSEVSSLK-VLLIEAGGDT  469 (720)
Q Consensus       434 yDVVIIGSGiAGLvAA~~LAea~G~K-VLVLEKG~~~  469 (720)
                      -.|||||||..|+-+|..|++. |.+ |+||+|....
T Consensus       265 k~VvVIGgG~~a~d~A~~~~r~-Ga~~Vtiv~r~~~~  300 (456)
T 2vdc_G          265 KHVVVLGGGDTAMDCVRTAIRQ-GATSVKCLYRRDRK  300 (456)
T ss_dssp             SEEEEECSSHHHHHHHHHHHHT-TCSEEEEECSSCST
T ss_pred             CEEEEECCChhHHHHHHHHHHc-CCCEEEEEEeCCcc
Confidence            3799999999999999999999 885 9999998543

>3hwr_A 2-dehydropantoate 2-reductase; YP_299159.1, PANE/APBA family ketopantoate reductase, struct genomics, joint center for structural genomics; HET: NDP BCN; 2.15A {Ralstonia eutropha}

Probab=89.69  E-value=0.26  Score=51.60  Aligned_cols=30  Identities=37%  Similarity=0.638  Sum_probs=28.2

Q ss_pred             cEEEECCcHHHHHHHHHHHhcCCCcEEEEccC
Q psy14408        435 DIIIVGASAAGCVLANRLSEVSSLKVLLIEAG  466 (720)
Q Consensus       435 DVVIIGSGiAGLvAA~~LAea~G~KVLVLEKG  466 (720)
                      .|.|||+|..|...|..|+++ |++|+++ +.
T Consensus        21 kI~IiGaGa~G~~~a~~L~~~-G~~V~l~-~~   50 (318)
T 3hwr_A           21 KVAIMGAGAVGCYYGGMLARA-GHEVILI-AR   50 (318)
T ss_dssp             EEEEESCSHHHHHHHHHHHHT-TCEEEEE-CC
T ss_pred             cEEEECcCHHHHHHHHHHHHC-CCeEEEE-Ec
Confidence            699999999999999999999 9999999 54

>1jay_A Coenzyme F420H2:NADP+ oxidoreductase (FNO); rossman fold, structural genomics; HET: NAP F42; 1.65A {Archaeoglobus fulgidus} SCOP: c.2.1.6 PDB: 1jax_A*

Probab=89.58  E-value=0.28  Score=47.50  Aligned_cols=31  Identities=19%  Similarity=0.309  Sum_probs=29.0

Q ss_pred             cEEEEC-CcHHHHHHHHHHHhcCCCcEEEEccC
Q psy14408        435 DIIIVG-ASAAGCVLANRLSEVSSLKVLLIEAG  466 (720)
Q Consensus       435 DVVIIG-SGiAGLvAA~~LAea~G~KVLVLEKG  466 (720)
                      .|.||| +|..|...|..|+++ |++|++++|.
T Consensus         2 ~i~iiGa~G~~G~~ia~~l~~~-g~~V~~~~r~   33 (212)
T 1jay_A            2 RVALLGGTGNLGKGLALRLATL-GHEIVVGSRR   33 (212)
T ss_dssp             EEEEETTTSHHHHHHHHHHHTT-TCEEEEEESS
T ss_pred             eEEEEcCCCHHHHHHHHHHHHC-CCEEEEEeCC
Confidence            489999 999999999999999 9999999986

>1zej_A HBD-9, 3-hydroxyacyl-COA dehydrogenase; structural genomics, joint center for structural genomics, J protein structure initiative, PSI; HET: PE8; 2.00A {Archaeoglobus fulgidus}

Probab=89.57  E-value=0.26  Score=51.71  Aligned_cols=31  Identities=19%  Similarity=0.358  Sum_probs=29.0

Q ss_pred             cEEEECCcHHHHHHHHHHHhcCCCcEEEEccCC
Q psy14408        435 DIIIVGASAAGCVLANRLSEVSSLKVLLIEAGG  467 (720)
Q Consensus       435 DVVIIGSGiAGLvAA~~LAea~G~KVLVLEKG~  467 (720)
                      -|.|||+|..|...|..|+ + |++|+|+|+..
T Consensus        14 ~V~vIG~G~MG~~iA~~la-a-G~~V~v~d~~~   44 (293)
T 1zej_A           14 KVFVIGAGLMGRGIAIAIA-S-KHEVVLQDVSE   44 (293)
T ss_dssp             EEEEECCSHHHHHHHHHHH-T-TSEEEEECSCH
T ss_pred             eEEEEeeCHHHHHHHHHHH-c-CCEEEEEECCH
Confidence            7999999999999999999 8 99999999853

>3vtf_A UDP-glucose 6-dehydrogenase; two discrete alpha/beta domains, oxidoreducta; HET: UPG; 2.00A {Pyrobaculum islandicum}

Probab=89.57  E-value=0.26  Score=54.74  Aligned_cols=32  Identities=16%  Similarity=0.228  Sum_probs=29.9

Q ss_pred             ccEEEECCcHHHHHHHHHHHhcCCCcEEEEccC
Q psy14408        434 FDIIIVGASAAGCVLANRLSEVSSLKVLLIEAG  466 (720)
Q Consensus       434 yDVVIIGSGiAGLvAA~~LAea~G~KVLVLEKG  466 (720)
                      ..+.|||.|..||.+|..||++ |++|+.+|..
T Consensus        22 ~~IaViGlGYVGLp~A~~~A~~-G~~V~g~Did   53 (444)
T 3vtf_A           22 ASLSVLGLGYVGVVHAVGFALL-GHRVVGYDVN   53 (444)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHH-TCEEEEECSC
T ss_pred             CEEEEEccCHHHHHHHHHHHhC-CCcEEEEECC
Confidence            4899999999999999999999 9999999963

>4gwq_H DNA-directed RNA polymerase II subunit RPB1; binding sites, mediator complex, models, molecular, phosphor protein structure, tertiary; 4.50A {Saccharomyces cerevisiae}

Probab=89.52  E-value=0.24  Score=36.14  Aligned_cols=32  Identities=50%  Similarity=0.854  Sum_probs=0.0

Q ss_pred             cCCCCC-CCCCCCCCCCCCCCCCCCC-CCCCC-CCCCCCC
Q psy14408        172 YSPLSP-YNPRSLFSSQNPLSPLSPL-NANSP-YNPRNQI  208 (720)
Q Consensus       172 ~~~~~~-~~~~~~~~~~~~~~~~~~~-~~~~~-~~~~~~~  208 (720)
                      |+|+|| |+|+|+.     -||+||. +++|| |+|+++.
T Consensus         1 YsPtSP~ysPtSP~-----YsPtSP~YsPtSP~YsPtSP~   35 (35)
T 4gwq_H            1 YSPTSPSYSPTSPS-----YSPTSPSYSPTSPSYSPTSPS   35 (35)
T ss_dssp             -----CCSSSCCCC-----CCSSSSCSCCCCCCCC-----
T ss_pred             CCCCCCCcCCCCCC-----cCCCCCCcCCCCCCCCCCCCC

>2ewd_A Lactate dehydrogenase,; protein-substrate_cofactor analog complex, oxidoreductase; HET: A3D; 2.00A {Cryptosporidium parvum} PDB: 2frm_A 2fn7_A* 2fnz_A* 2fm3_A

Probab=89.49  E-value=0.27  Score=51.44  Aligned_cols=32  Identities=22%  Similarity=0.402  Sum_probs=30.0

Q ss_pred             cEEEECCcHHHHHHHHHHHhcCCC-cEEEEccCC
Q psy14408        435 DIIIVGASAAGCVLANRLSEVSSL-KVLLIEAGG  467 (720)
Q Consensus       435 DVVIIGSGiAGLvAA~~LAea~G~-KVLVLEKG~  467 (720)
                      .|.|||+|..|...|..|+++ |+ +|+|+|+..
T Consensus         6 kI~VIGaG~~G~~ia~~la~~-g~~~V~l~D~~~   38 (317)
T 2ewd_A            6 KIAVIGSGQIGGNIAYIVGKD-NLADVVLFDIAE   38 (317)
T ss_dssp             EEEEECCSHHHHHHHHHHHHH-TCCEEEEECSSS
T ss_pred             EEEEECCCHHHHHHHHHHHhC-CCceEEEEeCCc
Confidence            699999999999999999999 98 999999864

>2a9f_A Putative malic enzyme ((S)-malate:NAD+ oxidoreductase (decarboxylating)); hypothetical protein, structural genomics, PSI; 2.50A {Streptococcus pyogenes}

Probab=89.46  E-value=0.28  Score=53.76  Aligned_cols=37  Identities=27%  Similarity=0.404  Sum_probs=33.2

Q ss_pred             CCCcccEEEECCcHHHHHHHHHHHhcCCC-cEEEEccCC
Q psy14408        430 SGDCFDIIIVGASAAGCVLANRLSEVSSL-KVLLIEAGG  467 (720)
Q Consensus       430 ~d~eyDVVIIGSGiAGLvAA~~LAea~G~-KVLVLEKG~  467 (720)
                      ...+..|||+|+|.+|..+|..|... |. +|+|+|+.+
T Consensus       185 ~l~d~kVVi~GAGaAG~~iA~ll~~~-Ga~~I~v~D~~G  222 (398)
T 2a9f_A          185 SLDEVSIVVNGGGSAGLSITRKLLAA-GATKVTVVDKFG  222 (398)
T ss_dssp             CTTSCEEEEECCSHHHHHHHHHHHHH-TCCEEEEEETTE
T ss_pred             CCCccEEEEECCCHHHHHHHHHHHHc-CCCeEEEEECCC
Confidence            34567999999999999999999999 98 999999974

>4b1b_A TRXR, thioredoxin reductase; oxidoreductase, FAD, NADPH, thiol-mediated redox metabolism, pyridine nucleotide-disulfide oxidoreductase; HET: FAD; 2.90A {Plasmodium falciparum}

Probab=89.43  E-value=0.3  Score=55.31  Aligned_cols=34  Identities=18%  Similarity=0.123  Sum_probs=31.1

Q ss_pred             cEEEECCcHHHHHHHHHHHhcCCCcEEEEccCCCC
Q psy14408        435 DIIIVGASAAGCVLANRLSEVSSLKVLLIEAGGDT  469 (720)
Q Consensus       435 DVVIIGSGiAGLvAA~~LAea~G~KVLVLEKG~~~  469 (720)
                      .+||||||..|+-.|..+++. |.+|+|+++....
T Consensus       225 ~lvIIGgG~IGlE~A~~~~~l-G~~VTii~~~~~L  258 (542)
T 4b1b_A          225 KTLVVGASYVALECSGFLNSL-GYDVTVAVRSIVL  258 (542)
T ss_dssp             SEEEECCSHHHHHHHHHHHHH-TCCEEEEESSCSS
T ss_pred             eEEEECCCHHHHHHHHHHHhc-CCeEEEecccccc
Confidence            799999999999999999999 9999999986443

>3k96_A Glycerol-3-phosphate dehydrogenase [NAD(P)+]; GPSA, IDP01976, oxidoreductase, phospholipid biosynthesis; HET: EPE; 2.10A {Coxiella burnetii}

Probab=89.40  E-value=0.27  Score=52.70  Aligned_cols=32  Identities=34%  Similarity=0.305  Sum_probs=30.2

Q ss_pred             ccEEEECCcHHHHHHHHHHHhcCCCcEEEEccC
Q psy14408        434 FDIIIVGASAAGCVLANRLSEVSSLKVLLIEAG  466 (720)
Q Consensus       434 yDVVIIGSGiAGLvAA~~LAea~G~KVLVLEKG  466 (720)
                      -.|.|||+|..|.+.|..|+++ |++|++++|.
T Consensus        30 mkI~VIGaG~mG~alA~~La~~-G~~V~l~~r~   61 (356)
T 3k96_A           30 HPIAILGAGSWGTALALVLARK-GQKVRLWSYE   61 (356)
T ss_dssp             SCEEEECCSHHHHHHHHHHHTT-TCCEEEECSC
T ss_pred             CeEEEECccHHHHHHHHHHHHC-CCeEEEEeCC
Confidence            3799999999999999999999 9999999985

>4dio_A NAD(P) transhydrogenase subunit alpha PART 1; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.60A {Sinorhizobium meliloti}

Probab=89.40  E-value=0.29  Score=53.73  Aligned_cols=34  Identities=18%  Similarity=0.192  Sum_probs=31.1

Q ss_pred             cccEEEECCcHHHHHHHHHHHhcCCCcEEEEccCC
Q psy14408        433 CFDIIIVGASAAGCVLANRLSEVSSLKVLLIEAGG  467 (720)
Q Consensus       433 eyDVVIIGSGiAGLvAA~~LAea~G~KVLVLEKG~  467 (720)
                      ...|+|||+|.+|+.+|..|... |.+|+++|+..
T Consensus       190 ~~kV~ViG~G~iG~~aa~~a~~l-Ga~V~v~D~~~  223 (405)
T 4dio_A          190 AAKIFVMGAGVAGLQAIATARRL-GAVVSATDVRP  223 (405)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHT-TCEEEEECSST
T ss_pred             CCEEEEECCcHHHHHHHHHHHHC-CCEEEEEcCCH
Confidence            45899999999999999999988 99999999874

>3oj0_A Glutr, glutamyl-tRNA reductase; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: MSE SO4; 1.65A {Thermoplasma volcanium}

Probab=89.34  E-value=0.12  Score=47.30  Aligned_cols=31  Identities=23%  Similarity=0.267  Sum_probs=29.1

Q ss_pred             cEEEECCcHHHHHHHHHHHhcCCCcEEEEccC
Q psy14408        435 DIIIVGASAAGCVLANRLSEVSSLKVLLIEAG  466 (720)
Q Consensus       435 DVVIIGSGiAGLvAA~~LAea~G~KVLVLEKG  466 (720)
                      .|+|||+|..|..+|..|++. |++|+|+++.
T Consensus        23 ~v~iiG~G~iG~~~a~~l~~~-g~~v~v~~r~   53 (144)
T 3oj0_A           23 KILLVGNGMLASEIAPYFSYP-QYKVTVAGRN   53 (144)
T ss_dssp             EEEEECCSHHHHHHGGGCCTT-TCEEEEEESC
T ss_pred             EEEEECCCHHHHHHHHHHHhC-CCEEEEEcCC
Confidence            799999999999999999998 9999999986

>3pef_A 6-phosphogluconate dehydrogenase, NAD-binding; gamma-hydroxybutyrate dehydrogenase, succinic semialdehyde R geobacter metallireducens; HET: NAP; 2.07A {Geobacter metallireducens}

Probab=89.32  E-value=0.3  Score=50.00  Aligned_cols=32  Identities=16%  Similarity=0.252  Sum_probs=30.0

Q ss_pred             cEEEECCcHHHHHHHHHHHhcCCCcEEEEccCC
Q psy14408        435 DIIIVGASAAGCVLANRLSEVSSLKVLLIEAGG  467 (720)
Q Consensus       435 DVVIIGSGiAGLvAA~~LAea~G~KVLVLEKG~  467 (720)
                      .|.|||.|..|...|..|+++ |++|++.++..
T Consensus         3 ~i~iIG~G~mG~~~a~~l~~~-G~~V~~~dr~~   34 (287)
T 3pef_A            3 KFGFIGLGIMGSAMAKNLVKA-GCSVTIWNRSP   34 (287)
T ss_dssp             EEEEECCSHHHHHHHHHHHHT-TCEEEEECSSG
T ss_pred             EEEEEeecHHHHHHHHHHHHC-CCeEEEEcCCH
Confidence            589999999999999999999 99999999864

>1pzg_A LDH, lactate dehydrogenase; apicomplexa, APAD, tetramer, rossmann fold, oxidoreductase; HET: CME A3D; 1.60A {Toxoplasma gondii} SCOP: c.2.1.5 d.162.1.1 PDB: 1pzf_A* 1pze_A* 1pzh_A* 3om9_A* 1sov_A 1sow_A* 3czm_A*

Probab=89.29  E-value=0.29  Score=51.89  Aligned_cols=32  Identities=16%  Similarity=0.269  Sum_probs=30.0

Q ss_pred             cEEEECCcHHHHHHHHHHHhcCCC-cEEEEccCC
Q psy14408        435 DIIIVGASAAGCVLANRLSEVSSL-KVLLIEAGG  467 (720)
Q Consensus       435 DVVIIGSGiAGLvAA~~LAea~G~-KVLVLEKG~  467 (720)
                      .|+|||+|..|.++|..|++. |+ +|+|+|+..
T Consensus        11 kI~VIGaG~vG~~lA~~la~~-g~~~V~L~D~~~   43 (331)
T 1pzg_A           11 KVAMIGSGMIGGTMGYLCALR-ELADVVLYDVVK   43 (331)
T ss_dssp             EEEEECCSHHHHHHHHHHHHH-TCCEEEEECSSS
T ss_pred             EEEEECCCHHHHHHHHHHHhC-CCCeEEEEECCh
Confidence            699999999999999999999 98 999999864

>2vns_A Metalloreductase steap3; metal-binding, transmembrane, rossmann fold, transport, cell cycle, transferrin, flavoprotein, alternative splicing; HET: CIT; 2.0A {Homo sapiens} PDB: 2vq3_A*

Probab=89.26  E-value=0.32  Score=47.97  Aligned_cols=32  Identities=25%  Similarity=0.260  Sum_probs=29.9

Q ss_pred             ccEEEECCcHHHHHHHHHHHhcCCCcEEEEccC
Q psy14408        434 FDIIIVGASAAGCVLANRLSEVSSLKVLLIEAG  466 (720)
Q Consensus       434 yDVVIIGSGiAGLvAA~~LAea~G~KVLVLEKG  466 (720)
                      ..|.|||+|..|...|..|++. |++|++++|.
T Consensus        29 ~~I~iiG~G~~G~~la~~l~~~-g~~V~~~~r~   60 (215)
T 2vns_A           29 PKVGILGSGDFARSLATRLVGS-GFKVVVGSRN   60 (215)
T ss_dssp             CCEEEECCSHHHHHHHHHHHHT-TCCEEEEESS
T ss_pred             CEEEEEccCHHHHHHHHHHHHC-CCEEEEEeCC
Confidence            3699999999999999999999 9999999986

>3dtt_A NADP oxidoreductase; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: NAP; 1.70A {Arthrobacter SP}

Probab=89.16  E-value=0.31  Score=49.00  Aligned_cols=33  Identities=18%  Similarity=0.359  Sum_probs=30.6

Q ss_pred             ccEEEECCcHHHHHHHHHHHhcCCCcEEEEccCC
Q psy14408        434 FDIIIVGASAAGCVLANRLSEVSSLKVLLIEAGG  467 (720)
Q Consensus       434 yDVVIIGSGiAGLvAA~~LAea~G~KVLVLEKG~  467 (720)
                      ..|.|||+|..|...|..|+++ |++|++.+|..
T Consensus        20 ~kIgiIG~G~mG~alA~~L~~~-G~~V~~~~r~~   52 (245)
T 3dtt_A           20 MKIAVLGTGTVGRTMAGALADL-GHEVTIGTRDP   52 (245)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHT-TCEEEEEESCH
T ss_pred             CeEEEECCCHHHHHHHHHHHHC-CCEEEEEeCCh
Confidence            4799999999999999999999 99999999863

>3o0h_A Glutathione reductase; ssgcid, structur genomics, seattle structural genomics center for infectious gluathione reductase, oxidoreductase; HET: FAD; 1.90A {Bartonella henselae}

Probab=89.10  E-value=0.3  Score=53.69  Aligned_cols=34  Identities=29%  Similarity=0.448  Sum_probs=31.8

Q ss_pred             cEEEECCcHHHHHHHHHHHhcCCCcEEEEccCCCC
Q psy14408        435 DIIIVGASAAGCVLANRLSEVSSLKVLLIEAGGDT  469 (720)
Q Consensus       435 DVVIIGSGiAGLvAA~~LAea~G~KVLVLEKG~~~  469 (720)
                      .|+|||+|..|+-+|..|++. |.+|+|+|++...
T Consensus       193 ~v~ViGgG~~g~e~A~~l~~~-g~~Vtli~~~~~~  226 (484)
T 3o0h_A          193 SIVIVGGGYIGVEFANIFHGL-GVKTTLLHRGDLI  226 (484)
T ss_dssp             EEEEECCSHHHHHHHHHHHHT-TCEEEEECSSSSS
T ss_pred             cEEEECcCHHHHHHHHHHHHc-CCeEEEEECCCcc
Confidence            899999999999999999999 9999999998654

>1vl6_A Malate oxidoreductase; TM0542, NAD-dependent malic enzyme, structural genomics, JCS protein structure initiative, PSI; 2.61A {Thermotoga maritima} SCOP: c.2.1.7 c.58.1.3 PDB: 2hae_A*

Probab=89.07  E-value=0.31  Score=53.27  Aligned_cols=38  Identities=18%  Similarity=0.341  Sum_probs=33.4

Q ss_pred             CCCcccEEEECCcHHHHHHHHHHHhcCCC-cEEEEccCCC
Q psy14408        430 SGDCFDIIIVGASAAGCVLANRLSEVSSL-KVLLIEAGGD  468 (720)
Q Consensus       430 ~d~eyDVVIIGSGiAGLvAA~~LAea~G~-KVLVLEKG~~  468 (720)
                      ...+..|||+|+|.+|..+|..|... |. +|+|+|+.+.
T Consensus       189 ~l~~~kVVv~GAGaAG~~iAkll~~~-G~~~I~v~Dr~Gl  227 (388)
T 1vl6_A          189 KIEEVKVVVNGIGAAGYNIVKFLLDL-GVKNVVAVDRKGI  227 (388)
T ss_dssp             CTTTCEEEEECCSHHHHHHHHHHHHH-TCCEEEEEETTEE
T ss_pred             CCCCcEEEEECCCHHHHHHHHHHHhC-CCCeEEEEECCCc
Confidence            34567999999999999999999999 98 7999999743

>2v6b_A L-LDH, L-lactate dehydrogenase; oxidoreductase, radioresistance, NAD, cytoplasm, mesophilic, glycolysis; 2.50A {Deinococcus radiodurans}

Probab=89.07  E-value=0.31  Score=50.92  Aligned_cols=32  Identities=19%  Similarity=0.262  Sum_probs=29.4

Q ss_pred             cEEEECCcHHHHHHHHHHHhcCCC--cEEEEccCC
Q psy14408        435 DIIIVGASAAGCVLANRLSEVSSL--KVLLIEAGG  467 (720)
Q Consensus       435 DVVIIGSGiAGLvAA~~LAea~G~--KVLVLEKG~  467 (720)
                      .|+|||+|..|.+.|..|+.. |+  +|+|+|+..
T Consensus         2 kI~VIGaG~vG~~la~~la~~-g~~~eV~L~D~~~   35 (304)
T 2v6b_A            2 KVGVVGTGFVGSTAAFALVLR-GSCSELVLVDRDE   35 (304)
T ss_dssp             EEEEECCSHHHHHHHHHHHHT-TCCSEEEEECSSH
T ss_pred             EEEEECCCHHHHHHHHHHHhC-CCCCEEEEEeCCH
Confidence            489999999999999999999 98  999999863

>3l9w_A Glutathione-regulated potassium-efflux system Pro linker, ancillary protein KEFF; potassium channel regulation, domains, antiport; HET: FMN AMP GSH; 1.75A {Escherichia coli} PDB: 3eyw_A* 3l9x_A*

Probab=89.02  E-value=0.3  Score=53.55  Aligned_cols=32  Identities=19%  Similarity=0.337  Sum_probs=30.1

Q ss_pred             cEEEECCcHHHHHHHHHHHhcCCCcEEEEccCC
Q psy14408        435 DIIIVGASAAGCVLANRLSEVSSLKVLLIEAGG  467 (720)
Q Consensus       435 DVVIIGSGiAGLvAA~~LAea~G~KVLVLEKG~  467 (720)
                      .|||||.|-.|..+|..|.++ |++|+|||+..
T Consensus         6 ~viIiG~Gr~G~~va~~L~~~-g~~vvvId~d~   37 (413)
T 3l9w_A            6 RVIIAGFGRFGQITGRLLLSS-GVKMVVLDHDP   37 (413)
T ss_dssp             SEEEECCSHHHHHHHHHHHHT-TCCEEEEECCH
T ss_pred             eEEEECCCHHHHHHHHHHHHC-CCCEEEEECCH
Confidence            699999999999999999999 99999999863

>3doj_A AT3G25530, dehydrogenase-like protein; gamma-hydroxybutyrate dehydrogenase, 4-hydroxybutyrate dehydrogenase; 2.10A {Arabidopsis thaliana}

Probab=88.98  E-value=0.32  Score=50.63  Aligned_cols=32  Identities=16%  Similarity=0.186  Sum_probs=30.3

Q ss_pred             cEEEECCcHHHHHHHHHHHhcCCCcEEEEccCC
Q psy14408        435 DIIIVGASAAGCVLANRLSEVSSLKVLLIEAGG  467 (720)
Q Consensus       435 DVVIIGSGiAGLvAA~~LAea~G~KVLVLEKG~  467 (720)
                      .|.|||.|..|...|..|+++ |++|+++++..
T Consensus        23 ~I~iIG~G~mG~~~A~~l~~~-G~~V~~~dr~~   54 (310)
T 3doj_A           23 EVGFLGLGIMGKAMSMNLLKN-GFKVTVWNRTL   54 (310)
T ss_dssp             EEEEECCSHHHHHHHHHHHHT-TCEEEEECSSG
T ss_pred             EEEEECccHHHHHHHHHHHHC-CCeEEEEeCCH
Confidence            699999999999999999999 99999999864

>3g0o_A 3-hydroxyisobutyrate dehydrogenase; NAD(P), valine catabolism, tartaric acid, target 11128H, NYSGXRC, PSI-2, structural genomics; HET: TLA; 1.80A {Salmonella typhimurium}

Probab=88.95  E-value=0.32  Score=50.30  Aligned_cols=32  Identities=19%  Similarity=0.128  Sum_probs=30.0

Q ss_pred             cEEEECCcHHHHHHHHHHHhcCCCcEEEEccCC
Q psy14408        435 DIIIVGASAAGCVLANRLSEVSSLKVLLIEAGG  467 (720)
Q Consensus       435 DVVIIGSGiAGLvAA~~LAea~G~KVLVLEKG~  467 (720)
                      .|.|||.|..|...|..|+++ |++|+++++..
T Consensus         9 ~I~iIG~G~mG~~~a~~l~~~-G~~V~~~dr~~   40 (303)
T 3g0o_A            9 HVGIVGLGSMGMGAARSCLRA-GLSTWGADLNP   40 (303)
T ss_dssp             EEEEECCSHHHHHHHHHHHHT-TCEEEEECSCH
T ss_pred             eEEEECCCHHHHHHHHHHHHC-CCeEEEEECCH
Confidence            699999999999999999999 99999999853

>1evy_A Glycerol-3-phosphate dehydrogenase; rossmann fold, oxidoreductase; HET: MYS; 1.75A {Leishmania mexicana} SCOP: a.100.1.6 c.2.1.6 PDB: 1evz_A* 1jdj_A* 1m66_A* 1m67_A* 1n1e_A* 1n1g_A*

Probab=88.93  E-value=0.19  Score=53.18  Aligned_cols=31  Identities=26%  Similarity=0.318  Sum_probs=29.4

Q ss_pred             cEEEECCcHHHHHHHHHHHhcCCCcEEEEccC
Q psy14408        435 DIIIVGASAAGCVLANRLSEVSSLKVLLIEAG  466 (720)
Q Consensus       435 DVVIIGSGiAGLvAA~~LAea~G~KVLVLEKG  466 (720)
                      .|.|||+|..|...|..|+++ |++|+++++.
T Consensus        17 kI~iIG~G~mG~~la~~L~~~-G~~V~~~~r~   47 (366)
T 1evy_A           17 KAVVFGSGAFGTALAMVLSKK-CREVCVWHMN   47 (366)
T ss_dssp             EEEEECCSHHHHHHHHHHTTT-EEEEEEECSC
T ss_pred             eEEEECCCHHHHHHHHHHHhC-CCEEEEEECC
Confidence            699999999999999999999 9999999985

>2hjr_A Malate dehydrogenase; malaria, structural genomics, structural genomics consortium, SGC, oxidoreductase; HET: CIT APR; 2.20A {Cryptosporidium parvum}

Probab=88.88  E-value=0.35  Score=51.26  Aligned_cols=32  Identities=28%  Similarity=0.398  Sum_probs=30.0

Q ss_pred             cEEEECCcHHHHHHHHHHHhcCCC-cEEEEccCC
Q psy14408        435 DIIIVGASAAGCVLANRLSEVSSL-KVLLIEAGG  467 (720)
Q Consensus       435 DVVIIGSGiAGLvAA~~LAea~G~-KVLVLEKG~  467 (720)
                      .|.|||+|..|.++|..||+. |+ +|+|+|+..
T Consensus        16 kI~ViGaG~vG~~iA~~la~~-g~~~V~L~Di~~   48 (328)
T 2hjr_A           16 KISIIGAGQIGSTIALLLGQK-DLGDVYMFDIIE   48 (328)
T ss_dssp             EEEEECCSHHHHHHHHHHHHT-TCCEEEEECSST
T ss_pred             EEEEECCCHHHHHHHHHHHhC-CCCeEEEEECCH
Confidence            799999999999999999999 98 999999864

>3mog_A Probable 3-hydroxybutyryl-COA dehydrogenase; structural genomics, PSI, protein structure initiative, NYSG oxidoreductase; 2.20A {Escherichia coli}

Probab=88.83  E-value=0.31  Score=54.51  Aligned_cols=32  Identities=19%  Similarity=0.376  Sum_probs=29.8

Q ss_pred             cEEEECCcHHHHHHHHHHHhcCCCcEEEEccCC
Q psy14408        435 DIIIVGASAAGCVLANRLSEVSSLKVLLIEAGG  467 (720)
Q Consensus       435 DVVIIGSGiAGLvAA~~LAea~G~KVLVLEKG~  467 (720)
                      .|.|||+|..|...|..|+++ |++|+|+|+..
T Consensus         7 kVgVIGaG~MG~~IA~~la~a-G~~V~l~D~~~   38 (483)
T 3mog_A            7 TVAVIGSGTMGAGIAEVAASH-GHQVLLYDISA   38 (483)
T ss_dssp             CEEEECCSHHHHHHHHHHHHT-TCCEEEECSCH
T ss_pred             EEEEECcCHHHHHHHHHHHHC-CCeEEEEECCH
Confidence            699999999999999999999 99999999753

>4a9w_A Monooxygenase; baeyer-villiger, FAD, oxidoreductase; HET: FAD; 2.72A {Stenotrophomonas maltophilia}

Probab=88.79  E-value=0.26  Score=50.33  Aligned_cols=32  Identities=19%  Similarity=0.370  Sum_probs=29.2

Q ss_pred             ccEEEECCcHHHHHHHHHHHhcCCCcEEEEccCC
Q psy14408        434 FDIIIVGASAAGCVLANRLSEVSSLKVLLIEAGG  467 (720)
Q Consensus       434 yDVVIIGSGiAGLvAA~~LAea~G~KVLVLEKG~  467 (720)
                      -.|+|||+|..|+-+|..|++. | +|+++++..
T Consensus       164 ~~v~VvG~G~~g~e~a~~l~~~-~-~v~~v~~~~  195 (357)
T 4a9w_A          164 MRVAIIGGGNSGAQILAEVSTV-A-ETTWITQHE  195 (357)
T ss_dssp             SEEEEECCSHHHHHHHHHHTTT-S-EEEEECSSC
T ss_pred             CEEEEECCCcCHHHHHHHHHhh-C-CEEEEECCC
Confidence            3899999999999999999999 8 699999873

>3p2y_A Alanine dehydrogenase/pyridine nucleotide transhy; seattle structural genomics center for infectious disease, S tuberculosis; 1.82A {Mycobacterium smegmatis str}

Probab=88.65  E-value=0.32  Score=53.00  Aligned_cols=34  Identities=12%  Similarity=0.096  Sum_probs=31.1

Q ss_pred             cccEEEECCcHHHHHHHHHHHhcCCCcEEEEccCC
Q psy14408        433 CFDIIIVGASAAGCVLANRLSEVSSLKVLLIEAGG  467 (720)
Q Consensus       433 eyDVVIIGSGiAGLvAA~~LAea~G~KVLVLEKG~  467 (720)
                      ...|+|||+|.+|+.+|..|... |.+|+++|+..
T Consensus       184 ~~kV~ViG~G~iG~~aa~~a~~l-Ga~V~v~D~~~  217 (381)
T 3p2y_A          184 PASALVLGVGVAGLQALATAKRL-GAKTTGYDVRP  217 (381)
T ss_dssp             CCEEEEESCSHHHHHHHHHHHHH-TCEEEEECSSG
T ss_pred             CCEEEEECchHHHHHHHHHHHHC-CCEEEEEeCCH
Confidence            45899999999999999999998 99999999873

>4huj_A Uncharacterized protein; PSI-biology, nysgrc, structural genomics, NEW YORK structura genomics research consortium, dinucleotide-binding; 1.77A {Sinorhizobium meliloti}

Probab=88.65  E-value=0.29  Score=48.38  Aligned_cols=32  Identities=28%  Similarity=0.504  Sum_probs=29.7

Q ss_pred             ccEEEECCcHHHHHHHHHHHhcCCCcEEE-EccC
Q psy14408        434 FDIIIVGASAAGCVLANRLSEVSSLKVLL-IEAG  466 (720)
Q Consensus       434 yDVVIIGSGiAGLvAA~~LAea~G~KVLV-LEKG  466 (720)
                      ..|.|||+|..|...|..|+++ |++|++ ++|.
T Consensus        24 mkI~IIG~G~mG~~la~~l~~~-g~~V~~v~~r~   56 (220)
T 4huj_A           24 TTYAIIGAGAIGSALAERFTAA-QIPAIIANSRG   56 (220)
T ss_dssp             CCEEEEECHHHHHHHHHHHHHT-TCCEEEECTTC
T ss_pred             CEEEEECCCHHHHHHHHHHHhC-CCEEEEEECCC
Confidence            4799999999999999999999 999999 8876

>3fbs_A Oxidoreductase; structural genomics, PSI2, MCSG, protein STR initiative, midwest center for structural genomics; HET: FAD; 2.15A {Agrobacterium tumefaciens}

Probab=88.61  E-value=0.24  Score=49.44  Aligned_cols=33  Identities=18%  Similarity=0.058  Sum_probs=30.4

Q ss_pred             ccEEEECCcHHHHHHHHHHHhcCCCcEEEEccCCC
Q psy14408        434 FDIIIVGASAAGCVLANRLSEVSSLKVLLIEAGGD  468 (720)
Q Consensus       434 yDVVIIGSGiAGLvAA~~LAea~G~KVLVLEKG~~  468 (720)
                      -.|+|||+|..|+-+|..|++. | +|++++++..
T Consensus       142 ~~v~vvG~G~~~~e~a~~l~~~-g-~v~~v~~~~~  174 (297)
T 3fbs_A          142 GKIGVIAASPMAIHHALMLPDW-G-ETTFFTNGIV  174 (297)
T ss_dssp             CEEEEECCSTTHHHHHHHGGGT-S-EEEEECTTTC
T ss_pred             CEEEEEecCccHHHHHHHhhhc-C-cEEEEECCCC
Confidence            3899999999999999999999 9 9999998754

>3dgh_A TRXR-1, thioredoxin reductase 1, mitochondrial; oxidoreductase, rossmann, flavoprotein, alternative initiati mitochondrion, NADP; HET: FAD; 1.75A {Drosophila melanogaster} PDB: 2nvk_X* 3dh9_A*

Probab=88.55  E-value=0.32  Score=53.38  Aligned_cols=32  Identities=19%  Similarity=0.191  Sum_probs=30.1

Q ss_pred             cEEEECCcHHHHHHHHHHHhcCCCcEEEEccCC
Q psy14408        435 DIIIVGASAAGCVLANRLSEVSSLKVLLIEAGG  467 (720)
Q Consensus       435 DVVIIGSGiAGLvAA~~LAea~G~KVLVLEKG~  467 (720)
                      .|+|||+|..|+-+|..|++. |.+|+|+++..
T Consensus       189 ~vvViGgG~~g~E~A~~l~~~-g~~Vtlv~~~~  220 (483)
T 3dgh_A          189 KTLVVGAGYIGLECAGFLKGL-GYEPTVMVRSI  220 (483)
T ss_dssp             EEEEECCSHHHHHHHHHHHHT-TCEEEEEESSC
T ss_pred             cEEEECCCHHHHHHHHHHHHc-CCEEEEEeCCC
Confidence            799999999999999999999 99999999853

>3ew7_A LMO0794 protein; Q8Y8U8_lismo, putative NAD-dependent epimerase/dehydratase, LMR162, NESG, structural genomics, PSI-2; 2.73A {Listeria monocytogenes}

Probab=88.48  E-value=0.39  Score=45.94  Aligned_cols=31  Identities=26%  Similarity=0.283  Sum_probs=28.8

Q ss_pred             EEEECC-cHHHHHHHHHHHhcCCCcEEEEccCC
Q psy14408        436 IIIVGA-SAAGCVLANRLSEVSSLKVLLIEAGG  467 (720)
Q Consensus       436 VVIIGS-GiAGLvAA~~LAea~G~KVLVLEKG~  467 (720)
                      |+|+|| |..|..+|.+|+++ |++|+++.|..
T Consensus         3 vlVtGatG~iG~~l~~~L~~~-g~~V~~~~R~~   34 (221)
T 3ew7_A            3 IGIIGATGRAGSRILEEAKNR-GHEVTAIVRNA   34 (221)
T ss_dssp             EEEETTTSHHHHHHHHHHHHT-TCEEEEEESCS
T ss_pred             EEEEcCCchhHHHHHHHHHhC-CCEEEEEEcCc
Confidence            899995 99999999999999 99999999863

>4dna_A Probable glutathione reductase; structural genomics, protein structure initiative, NEW YORK structural genomix research consortium; HET: FAD; 2.80A {Sinorhizobium meliloti}

Probab=88.47  E-value=0.36  Score=52.72  Aligned_cols=34  Identities=26%  Similarity=0.388  Sum_probs=31.8

Q ss_pred             cEEEECCcHHHHHHHHHHHhcCCCcEEEEccCCCC
Q psy14408        435 DIIIVGASAAGCVLANRLSEVSSLKVLLIEAGGDT  469 (720)
Q Consensus       435 DVVIIGSGiAGLvAA~~LAea~G~KVLVLEKG~~~  469 (720)
                      .|+|||+|..|+-+|..|++. |.+|+|+|++...
T Consensus       172 ~v~ViGgG~~g~e~A~~l~~~-g~~Vt~v~~~~~~  205 (463)
T 4dna_A          172 SILIAGGGYIAVEFANIFHGL-GVKTTLIYRGKEI  205 (463)
T ss_dssp             EEEEECCSHHHHHHHHHHHHT-TCEEEEECSSSSS
T ss_pred             eEEEECCCHHHHHHHHHHHHc-CCeEEEEEcCCcc
Confidence            799999999999999999999 9999999998654

>3pdu_A 3-hydroxyisobutyrate dehydrogenase family protein; gamma-hydroxybutyrate dehydrogenase, succinic semialdehyde R glyoxylate metabolism; HET: NAP; 1.89A {Geobacter sulfurreducens}

Probab=88.41  E-value=0.31  Score=49.84  Aligned_cols=32  Identities=16%  Similarity=0.184  Sum_probs=30.1

Q ss_pred             cEEEECCcHHHHHHHHHHHhcCCCcEEEEccCC
Q psy14408        435 DIIIVGASAAGCVLANRLSEVSSLKVLLIEAGG  467 (720)
Q Consensus       435 DVVIIGSGiAGLvAA~~LAea~G~KVLVLEKG~  467 (720)
                      .|.|||.|..|...|..|+++ |++|++.+|..
T Consensus         3 ~I~iiG~G~mG~~~a~~l~~~-G~~V~~~dr~~   34 (287)
T 3pdu_A            3 TYGFLGLGIMGGPMAANLVRA-GFDVTVWNRNP   34 (287)
T ss_dssp             CEEEECCSTTHHHHHHHHHHH-TCCEEEECSSG
T ss_pred             eEEEEccCHHHHHHHHHHHHC-CCeEEEEcCCH
Confidence            589999999999999999999 99999999864

>3qha_A Putative oxidoreductase; seattle structural genomics center for infectious disease, S mycobacterium avium 104, rossmann fold; 2.25A {Mycobacterium avium}

Probab=88.27  E-value=0.3  Score=50.52  Aligned_cols=34  Identities=18%  Similarity=0.259  Sum_probs=31.4

Q ss_pred             ccEEEECCcHHHHHHHHHHHhcCCCcEEEEccCCC
Q psy14408        434 FDIIIVGASAAGCVLANRLSEVSSLKVLLIEAGGD  468 (720)
Q Consensus       434 yDVVIIGSGiAGLvAA~~LAea~G~KVLVLEKG~~  468 (720)
                      ..|.|||.|..|...|..|+++ |++|+++|+...
T Consensus        16 ~~I~vIG~G~mG~~~A~~l~~~-G~~V~~~dr~~~   49 (296)
T 3qha_A           16 LKLGYIGLGNMGAPMATRMTEW-PGGVTVYDIRIE   49 (296)
T ss_dssp             CCEEEECCSTTHHHHHHHHTTS-TTCEEEECSSTT
T ss_pred             CeEEEECcCHHHHHHHHHHHHC-CCeEEEEeCCHH
Confidence            4799999999999999999999 999999998754

>2eez_A Alanine dehydrogenase; TTHA0216, structural genomic NPPSFA, national project on protein structural and function analyses; 2.71A {Thermus thermophilus}

Probab=88.20  E-value=0.36  Score=51.72  Aligned_cols=32  Identities=16%  Similarity=0.324  Sum_probs=29.8

Q ss_pred             ccEEEECCcHHHHHHHHHHHhcCCCcEEEEccC
Q psy14408        434 FDIIIVGASAAGCVLANRLSEVSSLKVLLIEAG  466 (720)
Q Consensus       434 yDVVIIGSGiAGLvAA~~LAea~G~KVLVLEKG  466 (720)
                      -.|+|||+|..|+.+|..|+.. |.+|+++|+.
T Consensus       167 ~~V~ViGaG~iG~~~a~~l~~~-Ga~V~~~d~~  198 (369)
T 2eez_A          167 ASVVILGGGTVGTNAAKIALGM-GAQVTILDVN  198 (369)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHT-TCEEEEEESC
T ss_pred             CEEEEECCCHHHHHHHHHHHhC-CCEEEEEECC
Confidence            4799999999999999999998 9999999986

>4g65_A TRK system potassium uptake protein TRKA; structural genomics, center for structural genomics of infec diseases, csgid, niaid; HET: MSE; 2.09A {Vibrio vulnificus}

Probab=88.12  E-value=0.2  Score=55.66  Aligned_cols=32  Identities=31%  Similarity=0.534  Sum_probs=29.9

Q ss_pred             cEEEECCcHHHHHHHHHHHhcCCCcEEEEccCC
Q psy14408        435 DIIIVGASAAGCVLANRLSEVSSLKVLLIEAGG  467 (720)
Q Consensus       435 DVVIIGSGiAGLvAA~~LAea~G~KVLVLEKG~  467 (720)
                      .|||+|+|-.|...|..|+++ |+.|+|||+..
T Consensus         5 ~iiI~G~G~vG~~la~~L~~~-~~~v~vId~d~   36 (461)
T 4g65_A            5 KIIILGAGQVGGTLAENLVGE-NNDITIVDKDG   36 (461)
T ss_dssp             EEEEECCSHHHHHHHHHTCST-TEEEEEEESCH
T ss_pred             EEEEECCCHHHHHHHHHHHHC-CCCEEEEECCH
Confidence            599999999999999999999 99999999853

>3h2s_A Putative NADH-flavin reductase; Q03B84, NESG, LCR19, structural genomics, PSI-2, protein structure initiative; HET: NDP; 1.78A {Lactobacillus casei atcc 334}

Probab=88.12  E-value=0.42  Score=46.00  Aligned_cols=30  Identities=23%  Similarity=0.365  Sum_probs=28.6

Q ss_pred             EEEECC-cHHHHHHHHHHHhcCCCcEEEEccC
Q psy14408        436 IIIVGA-SAAGCVLANRLSEVSSLKVLLIEAG  466 (720)
Q Consensus       436 VVIIGS-GiAGLvAA~~LAea~G~KVLVLEKG  466 (720)
                      |+|+|| |..|..+|.+|+++ |++|+++.|.
T Consensus         3 ilVtGatG~iG~~l~~~L~~~-g~~V~~~~R~   33 (224)
T 3h2s_A            3 IAVLGATGRAGSAIVAEARRR-GHEVLAVVRD   33 (224)
T ss_dssp             EEEETTTSHHHHHHHHHHHHT-TCEEEEEESC
T ss_pred             EEEEcCCCHHHHHHHHHHHHC-CCEEEEEEec
Confidence            899998 99999999999999 9999999986

>1yqg_A Pyrroline-5-carboxylate reductase; structural genomics, PSI, structure initiative, midwest center for structural genomic oxidoreductase; 1.90A {Neisseria meningitidis} SCOP: a.100.1.10 c.2.1.6 PDB: 2ag8_A*

Probab=88.08  E-value=0.4  Score=47.98  Aligned_cols=31  Identities=13%  Similarity=0.393  Sum_probs=29.0

Q ss_pred             cEEEECCcHHHHHHHHHHHhcCC-CcEEEEccC
Q psy14408        435 DIIIVGASAAGCVLANRLSEVSS-LKVLLIEAG  466 (720)
Q Consensus       435 DVVIIGSGiAGLvAA~~LAea~G-~KVLVLEKG  466 (720)
                      .|.|||+|..|...|..|+++ | ++|+|++|.
T Consensus         2 ~i~iiG~G~mG~~~a~~l~~~-g~~~v~~~~r~   33 (263)
T 1yqg_A            2 NVYFLGGGNMAAAVAGGLVKQ-GGYRIYIANRG   33 (263)
T ss_dssp             EEEEECCSHHHHHHHHHHHHH-CSCEEEEECSS
T ss_pred             EEEEECchHHHHHHHHHHHHC-CCCeEEEECCC
Confidence            488999999999999999999 9 999999985

>2f1k_A Prephenate dehydrogenase; tyrosine synthesis, X-RA crystallography structure, oxidoreductase; HET: OMT NAP; 1.55A {Synechocystis SP} SCOP: a.100.1.12 c.2.1.6

Probab=88.04  E-value=0.41  Score=48.42  Aligned_cols=31  Identities=23%  Similarity=0.253  Sum_probs=29.0

Q ss_pred             cEEEECCcHHHHHHHHHHHhcCCCcEEEEccC
Q psy14408        435 DIIIVGASAAGCVLANRLSEVSSLKVLLIEAG  466 (720)
Q Consensus       435 DVVIIGSGiAGLvAA~~LAea~G~KVLVLEKG  466 (720)
                      .|.|||+|..|...|..|++. |++|+++++.
T Consensus         2 ~i~iiG~G~~G~~~a~~l~~~-g~~V~~~~~~   32 (279)
T 2f1k_A            2 KIGVVGLGLIGASLAGDLRRR-GHYLIGVSRQ   32 (279)
T ss_dssp             EEEEECCSHHHHHHHHHHHHT-TCEEEEECSC
T ss_pred             EEEEEcCcHHHHHHHHHHHHC-CCEEEEEECC
Confidence            489999999999999999999 9999999985

>1pjc_A Protein (L-alanine dehydrogenase); oxidoreductase, NAD; HET: NAD; 2.00A {Phormidium lapideum} SCOP: c.2.1.4 c.23.12.2 PDB: 1pjb_A* 1say_A

Probab=88.03  E-value=0.38  Score=51.47  Aligned_cols=32  Identities=16%  Similarity=0.282  Sum_probs=29.7

Q ss_pred             ccEEEECCcHHHHHHHHHHHhcCCCcEEEEccC
Q psy14408        434 FDIIIVGASAAGCVLANRLSEVSSLKVLLIEAG  466 (720)
Q Consensus       434 yDVVIIGSGiAGLvAA~~LAea~G~KVLVLEKG  466 (720)
                      -.|+|||+|.+|+.+|..|+.. |.+|+++++.
T Consensus       168 ~~VlViGaGgvG~~aa~~a~~~-Ga~V~v~dr~  199 (361)
T 1pjc_A          168 GKVVILGGGVVGTEAAKMAVGL-GAQVQIFDIN  199 (361)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHT-TCEEEEEESC
T ss_pred             CEEEEECCCHHHHHHHHHHHhC-CCEEEEEeCC
Confidence            3799999999999999999998 9999999986

>1hdo_A Biliverdin IX beta reductase; foetal metabolism, HAEM degradation, flavin reductase, diaphorase, green HAEM binding protein; HET: NAP; 1.15A {Homo sapiens} SCOP: c.2.1.2 PDB: 1he2_A* 1he3_A* 1he4_A* 1he5_A*

Probab=87.99  E-value=0.44  Score=44.88  Aligned_cols=32  Identities=19%  Similarity=0.286  Sum_probs=29.6

Q ss_pred             cEEEECC-cHHHHHHHHHHHhcCCCcEEEEccCC
Q psy14408        435 DIIIVGA-SAAGCVLANRLSEVSSLKVLLIEAGG  467 (720)
Q Consensus       435 DVVIIGS-GiAGLvAA~~LAea~G~KVLVLEKG~  467 (720)
                      -|+|+|| |..|..+|.+|+++ |++|+++.|..
T Consensus         5 ~ilVtGatG~iG~~l~~~l~~~-g~~V~~~~r~~   37 (206)
T 1hdo_A            5 KIAIFGATGQTGLTTLAQAVQA-GYEVTVLVRDS   37 (206)
T ss_dssp             EEEEESTTSHHHHHHHHHHHHT-TCEEEEEESCG
T ss_pred             EEEEEcCCcHHHHHHHHHHHHC-CCeEEEEEeCh
Confidence            5899998 99999999999999 99999999863

>2o8l_A V8 protease, taphylococcal serine; serine protease, enzyme, hydrolase; 1.50A {Staphylococcus aureus} SCOP: b.47.1.1 PDB: 1qy6_A

Probab=87.99  E-value=0.1  Score=53.64  Aligned_cols=8  Identities=38%  Similarity=0.671  Sum_probs=0.0

Q ss_pred             CCCCCCCC
Q psy14408        176 SPYNPRSL  183 (720)
Q Consensus       176 ~~~~~~~~  183 (720)
                      .|+||..+
T Consensus       220 ~~~~~~~~  227 (274)
T 2o8l_A          220 QPNNPDNP  227 (274)
T ss_dssp             --------
T ss_pred             CCCCCCCC
Confidence            34444443

>3g79_A NDP-N-acetyl-D-galactosaminuronic acid dehydrogen; structural genomics, protein structure initiative; 2.40A {Methanosarcina mazei GO1}

Probab=87.95  E-value=0.36  Score=54.03  Aligned_cols=34  Identities=21%  Similarity=0.272  Sum_probs=31.4

Q ss_pred             cEEEECCcHHHHHHHHHHHhcCCC-cEEEEccCCC
Q psy14408        435 DIIIVGASAAGCVLANRLSEVSSL-KVLLIEAGGD  468 (720)
Q Consensus       435 DVVIIGSGiAGLvAA~~LAea~G~-KVLVLEKG~~  468 (720)
                      .|.|||+|..|+..|..||+++|+ +|+++|+...
T Consensus        20 kIaVIGlG~mG~~lA~~la~~~G~~~V~~~D~~~~   54 (478)
T 3g79_A           20 KIGVLGMGYVGIPAAVLFADAPCFEKVLGFQRNSK   54 (478)
T ss_dssp             EEEEECCSTTHHHHHHHHHHSTTCCEEEEECCCCT
T ss_pred             EEEEECcCHHHHHHHHHHHHhCCCCeEEEEECChh
Confidence            699999999999999999997689 9999998865

>1x13_A NAD(P) transhydrogenase subunit alpha; NAD(H)-binding domain, rossmann fold, oxidoreductase; 1.90A {Escherichia coli} PDB: 1x14_A* 1x15_A* 2bru_A*

Probab=87.89  E-value=0.39  Score=52.35  Aligned_cols=33  Identities=15%  Similarity=0.258  Sum_probs=30.0

Q ss_pred             ccEEEECCcHHHHHHHHHHHhcCCCcEEEEccCC
Q psy14408        434 FDIIIVGASAAGCVLANRLSEVSSLKVLLIEAGG  467 (720)
Q Consensus       434 yDVVIIGSGiAGLvAA~~LAea~G~KVLVLEKG~  467 (720)
                      -.|+|||+|.+|+.+|..|... |.+|+++|+..
T Consensus       173 ~~V~ViGaG~iG~~aa~~a~~~-Ga~V~v~D~~~  205 (401)
T 1x13_A          173 AKVMVIGAGVAGLAAIGAANSL-GAIVRAFDTRP  205 (401)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHT-TCEEEEECSCG
T ss_pred             CEEEEECCCHHHHHHHHHHHHC-CCEEEEEcCCH
Confidence            4799999999999999999888 99999999863

>1a5z_A L-lactate dehydrogenase; oxidoreductase, glycolysis, hyperthermophiles, thermotoga MA protein stability; HET: FBP NAD; 2.10A {Thermotoga maritima} SCOP: c.2.1.5 d.162.1.1

Probab=87.81  E-value=0.4  Score=50.39  Aligned_cols=31  Identities=29%  Similarity=0.344  Sum_probs=29.1

Q ss_pred             cEEEECCcHHHHHHHHHHHhcCCC--cEEEEccC
Q psy14408        435 DIIIVGASAAGCVLANRLSEVSSL--KVLLIEAG  466 (720)
Q Consensus       435 DVVIIGSGiAGLvAA~~LAea~G~--KVLVLEKG  466 (720)
                      .|.|||+|..|.+.|..|+++ |+  +|+++|+.
T Consensus         2 kI~VIGaG~~G~~la~~l~~~-g~~~~V~l~D~~   34 (319)
T 1a5z_A            2 KIGIVGLGRVGSSTAFALLMK-GFAREMVLIDVD   34 (319)
T ss_dssp             EEEEECCSHHHHHHHHHHHHH-TCCSEEEEECSS
T ss_pred             EEEEECCCHHHHHHHHHHHhC-CCCCeEEEEeCC
Confidence            489999999999999999999 99  99999986

>1yj8_A Glycerol-3-phosphate dehydrogenase; SGPP, structural genomics, PSI; 2.85A {Plasmodium falciparum}

Probab=87.78  E-value=0.35  Score=51.54  Aligned_cols=33  Identities=12%  Similarity=0.093  Sum_probs=30.6

Q ss_pred             cEEEECCcHHHHHHHHHHHhcCC-------CcEEEEccCCC
Q psy14408        435 DIIIVGASAAGCVLANRLSEVSS-------LKVLLIEAGGD  468 (720)
Q Consensus       435 DVVIIGSGiAGLvAA~~LAea~G-------~KVLVLEKG~~  468 (720)
                      .|.|||+|..|.+.|..|+++ |       ++|+++++...
T Consensus        23 kI~iIGaG~mG~alA~~L~~~-G~~~~~~~~~V~~~~r~~~   62 (375)
T 1yj8_A           23 KISILGSGNWASAISKVVGTN-AKNNYLFENEVRMWIRDEF   62 (375)
T ss_dssp             CEEEECCSHHHHHHHHHHHHH-HHHCTTBCSCEEEECCSCC
T ss_pred             EEEEECcCHHHHHHHHHHHHc-CCccCCCCCeEEEEECChh
Confidence            599999999999999999999 9       99999998754

>4dll_A 2-hydroxy-3-oxopropionate reductase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc, oxidoreductase; 2.11A {Polaromonas SP}

Probab=87.76  E-value=0.36  Score=50.54  Aligned_cols=32  Identities=22%  Similarity=0.353  Sum_probs=30.1

Q ss_pred             cEEEECCcHHHHHHHHHHHhcCCCcEEEEccCC
Q psy14408        435 DIIIVGASAAGCVLANRLSEVSSLKVLLIEAGG  467 (720)
Q Consensus       435 DVVIIGSGiAGLvAA~~LAea~G~KVLVLEKG~  467 (720)
                      .|.|||.|..|...|..|+++ |++|+++++..
T Consensus        33 ~I~iIG~G~mG~~~a~~l~~~-G~~V~~~dr~~   64 (320)
T 4dll_A           33 KITFLGTGSMGLPMARRLCEA-GYALQVWNRTP   64 (320)
T ss_dssp             EEEEECCTTTHHHHHHHHHHT-TCEEEEECSCH
T ss_pred             EEEEECccHHHHHHHHHHHhC-CCeEEEEcCCH
Confidence            799999999999999999999 99999999863

>2pv7_A T-protein [includes: chorismate mutase (EC 5.4.99 and prephenate dehydrogenase (EC...; 1574749, chorismate mutase type II; HET: MSE TYR NAD; 2.00A {Haemophilus influenzae} SCOP: a.100.1.12 c.2.1.6

Probab=87.73  E-value=0.44  Score=49.32  Aligned_cols=32  Identities=22%  Similarity=0.398  Sum_probs=30.0

Q ss_pred             cEEEEC-CcHHHHHHHHHHHhcCCCcEEEEccCC
Q psy14408        435 DIIIVG-ASAAGCVLANRLSEVSSLKVLLIEAGG  467 (720)
Q Consensus       435 DVVIIG-SGiAGLvAA~~LAea~G~KVLVLEKG~  467 (720)
                      .|.||| +|..|.+.|..|++. |++|+++++..
T Consensus        23 ~I~iIGg~G~mG~~la~~l~~~-G~~V~~~~~~~   55 (298)
T 2pv7_A           23 KIVIVGGYGKLGGLFARYLRAS-GYPISILDRED   55 (298)
T ss_dssp             CEEEETTTSHHHHHHHHHHHTT-TCCEEEECTTC
T ss_pred             EEEEEcCCCHHHHHHHHHHHhC-CCeEEEEECCc
Confidence            599999 999999999999999 99999999864

>3ojo_A CAP5O; rossmann fold, complex with cofactor NAD and EU(PDC)3, oxidi conformation, oxidoreductase; HET: NAD PDC; 2.50A {Staphylococcus aureus} PDB: 3ojl_A*

Probab=87.67  E-value=0.35  Score=53.47  Aligned_cols=31  Identities=16%  Similarity=0.260  Sum_probs=29.2

Q ss_pred             cEEEECCcHHHHHHHHHHHhcCCCcEEEEccC
Q psy14408        435 DIIIVGASAAGCVLANRLSEVSSLKVLLIEAG  466 (720)
Q Consensus       435 DVVIIGSGiAGLvAA~~LAea~G~KVLVLEKG  466 (720)
                      ...|||.|..|+..|..||++ |++|+++|+.
T Consensus        13 ~~~ViGlGyvGlp~A~~La~~-G~~V~~~D~~   43 (431)
T 3ojo_A           13 KLTVVGLGYIGLPTSIMFAKH-GVDVLGVDIN   43 (431)
T ss_dssp             EEEEECCSTTHHHHHHHHHHT-TCEEEEECSC
T ss_pred             ccEEEeeCHHHHHHHHHHHHC-CCEEEEEECC
Confidence            578999999999999999999 9999999974

>3e8x_A Putative NAD-dependent epimerase/dehydratase; structural genomics, APC7755, NADP, P protein structure initiative; HET: MSE NAP; 2.10A {Bacillus halodurans}

Probab=87.62  E-value=0.46  Score=46.45  Aligned_cols=32  Identities=16%  Similarity=0.251  Sum_probs=29.8

Q ss_pred             cEEEECC-cHHHHHHHHHHHhcCCCcEEEEccCC
Q psy14408        435 DIIIVGA-SAAGCVLANRLSEVSSLKVLLIEAGG  467 (720)
Q Consensus       435 DVVIIGS-GiAGLvAA~~LAea~G~KVLVLEKG~  467 (720)
                      -|+|+|| |..|..+|.+|+++ |++|+++.|..
T Consensus        23 ~ilVtGatG~iG~~l~~~L~~~-G~~V~~~~R~~   55 (236)
T 3e8x_A           23 RVLVVGANGKVARYLLSELKNK-GHEPVAMVRNE   55 (236)
T ss_dssp             EEEEETTTSHHHHHHHHHHHHT-TCEEEEEESSG
T ss_pred             eEEEECCCChHHHHHHHHHHhC-CCeEEEEECCh
Confidence            6999998 99999999999999 99999999863

>1hyh_A L-hicdh, L-2-hydroxyisocaproate dehydrogenase; L-2-hydroxycarboxylate dehydrogenase, L-lactate dehydrogenas oxidoreductase (CHOH(D)-NAD+(A)); HET: NAD; 2.20A {Weissella confusa} SCOP: c.2.1.5 d.162.1.1

Probab=87.62  E-value=0.42  Score=49.80  Aligned_cols=31  Identities=26%  Similarity=0.368  Sum_probs=29.0

Q ss_pred             cEEEECCcHHHHHHHHHHHhcCC--CcEEEEccC
Q psy14408        435 DIIIVGASAAGCVLANRLSEVSS--LKVLLIEAG  466 (720)
Q Consensus       435 DVVIIGSGiAGLvAA~~LAea~G--~KVLVLEKG  466 (720)
                      .|.|||+|..|...|..|+++ |  .+|+|+|+.
T Consensus         3 kI~VIGaG~~G~~la~~L~~~-g~~~~V~l~d~~   35 (309)
T 1hyh_A            3 KIGIIGLGNVGAAVAHGLIAQ-GVADDYVFIDAN   35 (309)
T ss_dssp             EEEEECCSHHHHHHHHHHHHH-TCCSEEEEECSS
T ss_pred             EEEEECCCHHHHHHHHHHHhC-CCCCEEEEEcCC
Confidence            589999999999999999999 8  799999986

>3ius_A Uncharacterized conserved protein; APC63810, silicibacter pomeroyi DSS, structural genomics, PSI-2, protein structure initiative; HET: MSE; 1.66A {Ruegeria pomeroyi dss-3}

Probab=87.55  E-value=0.41  Score=48.02  Aligned_cols=32  Identities=13%  Similarity=0.208  Sum_probs=30.0

Q ss_pred             cEEEECCcHHHHHHHHHHHhcCCCcEEEEccCC
Q psy14408        435 DIIIVGASAAGCVLANRLSEVSSLKVLLIEAGG  467 (720)
Q Consensus       435 DVVIIGSGiAGLvAA~~LAea~G~KVLVLEKG~  467 (720)
                      -|+|+|+|..|..++.+|.++ |++|+++.|..
T Consensus         7 ~ilVtGaG~iG~~l~~~L~~~-g~~V~~~~r~~   38 (286)
T 3ius_A            7 TLLSFGHGYTARVLSRALAPQ-GWRIIGTSRNP   38 (286)
T ss_dssp             EEEEETCCHHHHHHHHHHGGG-TCEEEEEESCG
T ss_pred             cEEEECCcHHHHHHHHHHHHC-CCEEEEEEcCh
Confidence            599999999999999999999 99999999863

>3c7a_A Octopine dehydrogenase; L) stereospecific opine dehydrogenas, oxidorecutase, oxidoreductase; HET: NAD; 2.10A {Pecten maximus} PDB: 3c7c_B* 3c7d_B* 3iqd_B*

Probab=87.49  E-value=0.3  Score=52.52  Aligned_cols=29  Identities=10%  Similarity=0.256  Sum_probs=27.5

Q ss_pred             cEEEECCcHHHHHHHHHHHh-cCCCcEEEEc
Q psy14408        435 DIIIVGASAAGCVLANRLSE-VSSLKVLLIE  464 (720)
Q Consensus       435 DVVIIGSGiAGLvAA~~LAe-a~G~KVLVLE  464 (720)
                      .|.|||+|..|.+.|..|++ + |++|++++
T Consensus         4 kI~ViGaG~~G~~~a~~La~~~-G~~V~~~~   33 (404)
T 3c7a_A            4 KVCVCGGGNGAHTLSGLAASRD-GVEVRVLT   33 (404)
T ss_dssp             EEEEECCSHHHHHHHHHHTTST-TEEEEEEC
T ss_pred             eEEEECCCHHHHHHHHHHHhCC-CCEEEEEe
Confidence            58999999999999999998 6 99999999

>1p77_A Shikimate 5-dehydrogenase; NADPH, oxidoreductase; HET: ATR; 1.95A {Haemophilus influenzae} SCOP: c.2.1.7 c.58.1.5 PDB: 1p74_A*

Probab=87.47  E-value=0.33  Score=49.81  Aligned_cols=31  Identities=19%  Similarity=0.263  Sum_probs=29.5

Q ss_pred             cEEEECCcHHHHHHHHHHHhcCCCcEEEEccC
Q psy14408        435 DIIIVGASAAGCVLANRLSEVSSLKVLLIEAG  466 (720)
Q Consensus       435 DVVIIGSGiAGLvAA~~LAea~G~KVLVLEKG  466 (720)
                      .|+|||+|-+|.++|..|++. |.+|+|+.|.
T Consensus       121 ~vlvlGaGg~g~a~a~~L~~~-G~~v~v~~R~  151 (272)
T 1p77_A          121 HVLILGAGGATKGVLLPLLQA-QQNIVLANRT  151 (272)
T ss_dssp             EEEEECCSHHHHTTHHHHHHT-TCEEEEEESS
T ss_pred             EEEEECCcHHHHHHHHHHHHC-CCEEEEEECC
Confidence            699999999999999999999 9999999986

>3gpi_A NAD-dependent epimerase/dehydratase; structural genomics, unknown function, PSI-2, protein structure initiative; 1.44A {Methylobacillus flagellatus KT}

Probab=87.45  E-value=0.53  Score=47.38  Aligned_cols=32  Identities=28%  Similarity=0.386  Sum_probs=30.1

Q ss_pred             cEEEECCcHHHHHHHHHHHhcCCCcEEEEccCC
Q psy14408        435 DIIIVGASAAGCVLANRLSEVSSLKVLLIEAGG  467 (720)
Q Consensus       435 DVVIIGSGiAGLvAA~~LAea~G~KVLVLEKG~  467 (720)
                      -|+|+|+|..|..++..|.++ |++|+++.|..
T Consensus         5 ~ilVtGaG~iG~~l~~~L~~~-g~~V~~~~r~~   36 (286)
T 3gpi_A            5 KILIAGCGDLGLELARRLTAQ-GHEVTGLRRSA   36 (286)
T ss_dssp             CEEEECCSHHHHHHHHHHHHT-TCCEEEEECTT
T ss_pred             cEEEECCCHHHHHHHHHHHHC-CCEEEEEeCCc
Confidence            599999999999999999999 99999999874

>1l7d_A Nicotinamide nucleotide transhydrogenase, subunit alpha 1; transhydrogenase domain I, oxidoreductase; 1.81A {Rhodospirillum rubrum} SCOP: c.2.1.4 c.23.12.2 PDB: 1hzz_A* 1f8g_A 1l7e_A* 1u28_A* 1u2d_A* 1u2g_A* 1xlt_A* 2oo5_A* 2oor_A* 2frd_A* 2fsv_A* 1nm5_A* 2fr8_A* 1ptj_A*

Probab=87.36  E-value=0.48  Score=51.12  Aligned_cols=33  Identities=12%  Similarity=0.229  Sum_probs=30.1

Q ss_pred             ccEEEECCcHHHHHHHHHHHhcCCCcEEEEccCC
Q psy14408        434 FDIIIVGASAAGCVLANRLSEVSSLKVLLIEAGG  467 (720)
Q Consensus       434 yDVVIIGSGiAGLvAA~~LAea~G~KVLVLEKG~  467 (720)
                      -.|+|||+|.+|+.+|..|... |.+|+++|+..
T Consensus       173 ~~V~ViGaG~iG~~aa~~a~~~-Ga~V~~~d~~~  205 (384)
T 1l7d_A          173 ARVLVFGVGVAGLQAIATAKRL-GAVVMATDVRA  205 (384)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHT-TCEEEEECSCS
T ss_pred             CEEEEECCCHHHHHHHHHHHHC-CCEEEEEeCCH
Confidence            4899999999999999999888 99999999864

>1x0v_A GPD-C, GPDH-C, glycerol-3-phosphate dehydrogenase [NAD+], cytoplasmic; two independent domains, GXGXXG motif, oxidoreductase; 2.30A {Homo sapiens} PDB: 1x0x_A* 1wpq_A* 2pla_A*

Probab=87.33  E-value=0.32  Score=51.01  Aligned_cols=33  Identities=21%  Similarity=0.276  Sum_probs=30.6

Q ss_pred             cEEEECCcHHHHHHHHHHHhcCC-------CcEEEEccCCC
Q psy14408        435 DIIIVGASAAGCVLANRLSEVSS-------LKVLLIEAGGD  468 (720)
Q Consensus       435 DVVIIGSGiAGLvAA~~LAea~G-------~KVLVLEKG~~  468 (720)
                      .|.|||+|..|.+.|..|+++ |       ++|+++++...
T Consensus        10 kI~iIG~G~mG~~~a~~l~~~-g~~~~~~~~~V~~~~r~~~   49 (354)
T 1x0v_A           10 KVCIVGSGNWGSAIAKIVGGN-AAQLAQFDPRVTMWVFEED   49 (354)
T ss_dssp             EEEEECCSHHHHHHHHHHHHH-HHHCTTEEEEEEEECCCCB
T ss_pred             eEEEECCCHHHHHHHHHHHhc-CCcccCCCCeEEEEEcChh
Confidence            699999999999999999999 9       99999998754

>2zyd_A 6-phosphogluconate dehydrogenase, decarboxylating; NADP, pentose phosphate pathway, oxidoreductase, 6-phosphogl dehydrogenase; HET: GLO; 1.50A {Escherichia coli} PDB: 2zya_A* 3fwn_A* 2zyg_A 2w8z_A* 2w90_A*

Probab=87.29  E-value=0.47  Score=52.92  Aligned_cols=34  Identities=21%  Similarity=0.216  Sum_probs=30.9

Q ss_pred             CcccEEEECCcHHHHHHHHHHHhcCCCcEEEEccC
Q psy14408        432 DCFDIIIVGASAAGCVLANRLSEVSSLKVLLIEAG  466 (720)
Q Consensus       432 ~eyDVVIIGSGiAGLvAA~~LAea~G~KVLVLEKG  466 (720)
                      .+-+|.|||.|..|...|..|+++ |++|+|.+|.
T Consensus        14 ~~~~IgvIGlG~MG~~lA~~La~~-G~~V~v~~r~   47 (480)
T 2zyd_A           14 SKQQIGVVGMAVMGRNLALNIESR-GYTVSIFNRS   47 (480)
T ss_dssp             -CBSEEEECCSHHHHHHHHHHHTT-TCCEEEECSS
T ss_pred             CCCeEEEEccHHHHHHHHHHHHhC-CCeEEEEeCC
Confidence            345899999999999999999999 9999999985

>1zud_1 Adenylyltransferase THIF; thiamin, thiazole, protein-protein complex, THIF, TRAN biosynthetic protein complex; 1.98A {Escherichia coli} PDB: 1zfn_A* 1zkm_A

Probab=87.25  E-value=0.42  Score=48.70  Aligned_cols=35  Identities=17%  Similarity=0.247  Sum_probs=30.6

Q ss_pred             CcccEEEECCcHHHHHHHHHHHhcCCC-cEEEEccCC
Q psy14408        432 DCFDIIIVGASAAGCVLANRLSEVSSL-KVLLIEAGG  467 (720)
Q Consensus       432 ~eyDVVIIGSGiAGLvAA~~LAea~G~-KVLVLEKG~  467 (720)
                      ....|+|||+|-.|..+|..|++. |. +++|+|...
T Consensus        27 ~~~~VlvvG~GglG~~va~~La~~-Gvg~i~lvD~d~   62 (251)
T 1zud_1           27 LDSQVLIIGLGGLGTPAALYLAGA-GVGTLVLADDDD   62 (251)
T ss_dssp             HTCEEEEECCSTTHHHHHHHHHHT-TCSEEEEECCCB
T ss_pred             hcCcEEEEccCHHHHHHHHHHHHc-CCCeEEEEeCCC
Confidence            345899999999999999999999 97 688999763

>2uyy_A N-PAC protein; long-chain dehydrogenase, cytokine; HET: NA7; 2.5A {Homo sapiens}

Probab=87.13  E-value=0.51  Score=48.82  Aligned_cols=32  Identities=16%  Similarity=0.203  Sum_probs=30.0

Q ss_pred             cEEEECCcHHHHHHHHHHHhcCCCcEEEEccCC
Q psy14408        435 DIIIVGASAAGCVLANRLSEVSSLKVLLIEAGG  467 (720)
Q Consensus       435 DVVIIGSGiAGLvAA~~LAea~G~KVLVLEKG~  467 (720)
                      .|.|||+|..|...|..|++. |++|+++++..
T Consensus        32 ~I~iIG~G~mG~~~a~~l~~~-g~~V~~~~~~~   63 (316)
T 2uyy_A           32 KIGFLGLGLMGSGIVSNLLKM-GHTVTVWNRTA   63 (316)
T ss_dssp             CEEEECCSHHHHHHHHHHHHT-TCCEEEECSSG
T ss_pred             eEEEEcccHHHHHHHHHHHhC-CCEEEEEeCCH
Confidence            699999999999999999999 99999999863

>2wtb_A MFP2, fatty acid multifunctional protein (ATMFP2); oxidoreductase, peroxisomes, beta-oxidation, fatty acid oxidation; 2.50A {Arabidopsis thaliana}

Probab=87.11  E-value=0.43  Score=56.03  Aligned_cols=31  Identities=26%  Similarity=0.377  Sum_probs=29.6

Q ss_pred             cEEEECCcHHHHHHHHHHHhcCCCcEEEEccC
Q psy14408        435 DIIIVGASAAGCVLANRLSEVSSLKVLLIEAG  466 (720)
Q Consensus       435 DVVIIGSGiAGLvAA~~LAea~G~KVLVLEKG  466 (720)
                      .|.|||+|..|...|..|+++ |++|+|+|+.
T Consensus       314 kV~VIGaG~MG~~iA~~la~a-G~~V~l~D~~  344 (725)
T 2wtb_A          314 KVAIIGGGLMGSGIATALILS-NYPVILKEVN  344 (725)
T ss_dssp             CEEEECCSHHHHHHHHHHHTT-TCCEEEECSS
T ss_pred             EEEEEcCCHhhHHHHHHHHhC-CCEEEEEECC
Confidence            599999999999999999999 9999999975

>1t2d_A LDH-P, L-lactate dehydrogenase; ternary complex, oxidoreductase; HET: NAD; 1.10A {Plasmodium falciparum} SCOP: c.2.1.5 d.162.1.1 PDB: 1t25_A* 1t26_A* 1t2c_A* 1t24_A* 2x8l_A 2ydn_A* 2a94_A* 1u4s_A* 1u5a_A* 1u5c_A* 1u4o_A* 1t2e_A* 1xiv_A* 1ceq_A 1ldg_A* 1cet_A* 1oc4_A* 2a92_A* 2aa3_A*

Probab=87.01  E-value=0.52  Score=49.80  Aligned_cols=32  Identities=28%  Similarity=0.488  Sum_probs=29.7

Q ss_pred             cEEEECCcHHHHHHHHHHHhcCCC-cEEEEccCC
Q psy14408        435 DIIIVGASAAGCVLANRLSEVSSL-KVLLIEAGG  467 (720)
Q Consensus       435 DVVIIGSGiAGLvAA~~LAea~G~-KVLVLEKG~  467 (720)
                      .|.|||+|..|..+|..|+.. |+ +|+|+|...
T Consensus         6 kI~VIGaG~vG~~ia~~la~~-g~~~v~L~Di~~   38 (322)
T 1t2d_A            6 KIVLVGSGMIGGVMATLIVQK-NLGDVVLFDIVK   38 (322)
T ss_dssp             EEEEECCSHHHHHHHHHHHHT-TCCEEEEECSSS
T ss_pred             EEEEECCCHHHHHHHHHHHhC-CCCeEEEEeCCH
Confidence            699999999999999999999 88 999999863

>4ezb_A Uncharacterized conserved protein; structural genomics, protein structure initiative, NEW YORK structural genomix research consortium; 2.10A {Sinorhizobium meliloti}

Probab=87.01  E-value=0.45  Score=49.90  Aligned_cols=32  Identities=16%  Similarity=0.149  Sum_probs=30.3

Q ss_pred             cEEEECCcHHHHHHHHHHHhcCC-CcEEEEccCC
Q psy14408        435 DIIIVGASAAGCVLANRLSEVSS-LKVLLIEAGG  467 (720)
Q Consensus       435 DVVIIGSGiAGLvAA~~LAea~G-~KVLVLEKG~  467 (720)
                      .|.|||.|..|...|..|+++ | ++|++.++..
T Consensus        26 ~IgvIG~G~mG~~lA~~L~~~-G~~~V~~~dr~~   58 (317)
T 4ezb_A           26 TIAFIGFGEAAQSIAGGLGGR-NAARLAAYDLRF   58 (317)
T ss_dssp             EEEEECCSHHHHHHHHHHHTT-TCSEEEEECGGG
T ss_pred             eEEEECccHHHHHHHHHHHHc-CCCeEEEEeCCC
Confidence            699999999999999999999 9 9999999874

>2egg_A AROE, shikimate 5-dehydrogenase; dimer, X-RAY diffraction, structural genomics, NPPSFA; 2.25A {Geobacillus kaustophilus}

Probab=86.98  E-value=0.49  Score=49.37  Aligned_cols=31  Identities=13%  Similarity=0.221  Sum_probs=29.2

Q ss_pred             cEEEECCcHHHHHHHHHHHhcCCC-cEEEEccC
Q psy14408        435 DIIIVGASAAGCVLANRLSEVSSL-KVLLIEAG  466 (720)
Q Consensus       435 DVVIIGSGiAGLvAA~~LAea~G~-KVLVLEKG  466 (720)
                      .|+|||+|.+|..+|..|++. |. +|+|+.|.
T Consensus       143 ~vlVlGaGg~g~aia~~L~~~-G~~~V~v~nR~  174 (297)
T 2egg_A          143 RILVIGAGGGARGIYFSLLST-AAERIDMANRT  174 (297)
T ss_dssp             EEEEECCSHHHHHHHHHHHTT-TCSEEEEECSS
T ss_pred             EEEEECcHHHHHHHHHHHHHC-CCCEEEEEeCC
Confidence            699999999999999999999 97 89999986

>1guz_A Malate dehydrogenase; oxidoreductase, tricarboxylic acid cycle, NAD; HET: NAD; 2.0A {Chlorobium vibrioforme} SCOP: c.2.1.5 d.162.1.1 PDB: 1gv1_A 1gv0_A*

Probab=86.86  E-value=0.54  Score=49.16  Aligned_cols=33  Identities=27%  Similarity=0.437  Sum_probs=29.3

Q ss_pred             cEEEECCcHHHHHHHHHHHhc-CCCcEEEEccCC
Q psy14408        435 DIIIVGASAAGCVLANRLSEV-SSLKVLLIEAGG  467 (720)
Q Consensus       435 DVVIIGSGiAGLvAA~~LAea-~G~KVLVLEKG~  467 (720)
                      .|.|||+|..|...|..|++. .|++|+++|+..
T Consensus         2 kI~VIGaG~vG~~la~~la~~~~g~~V~l~D~~~   35 (310)
T 1guz_A            2 KITVIGAGNVGATTAFRLAEKQLARELVLLDVVE   35 (310)
T ss_dssp             EEEEECCSHHHHHHHHHHHHTTCCSEEEEECSSS
T ss_pred             EEEEECCCHHHHHHHHHHHhCCCCCEEEEEeCCh
Confidence            489999999999999999985 278999999874

>2rcy_A Pyrroline carboxylate reductase; malaria, structural genomics, pyrroline reductase, oxidoredu structural genomics consortium, SGC; HET: NAP; 2.30A {Plasmodium falciparum}

Probab=86.78  E-value=0.65  Score=46.39  Aligned_cols=33  Identities=12%  Similarity=0.263  Sum_probs=30.2

Q ss_pred             cEEEECCcHHHHHHHHHHHhcCC----CcEEEEccCCC
Q psy14408        435 DIIIVGASAAGCVLANRLSEVSS----LKVLLIEAGGD  468 (720)
Q Consensus       435 DVVIIGSGiAGLvAA~~LAea~G----~KVLVLEKG~~  468 (720)
                      .|.|||+|..|...|..|+++ |    ++|+|++|...
T Consensus         6 ~i~iiG~G~mG~~~a~~l~~~-g~~~~~~v~~~~~~~~   42 (262)
T 2rcy_A            6 KLGFMGLGQMGSALAHGIANA-NIIKKENLFYYGPSKK   42 (262)
T ss_dssp             CEEEECCSHHHHHHHHHHHHH-TSSCGGGEEEECSSCC
T ss_pred             EEEEECcCHHHHHHHHHHHHC-CCCCCCeEEEEeCCcc
Confidence            699999999999999999999 9    79999998753

>3c24_A Putative oxidoreductase; YP_511008.1, structural genomics, center for structural genomics, JCSG, protein structure INI PSI-2; HET: MSE; 1.62A {Jannaschia SP}

Probab=86.77  E-value=0.52  Score=48.14  Aligned_cols=31  Identities=19%  Similarity=0.417  Sum_probs=29.4

Q ss_pred             cEEEECC-cHHHHHHHHHHHhcCCCcEEEEccC
Q psy14408        435 DIIIVGA-SAAGCVLANRLSEVSSLKVLLIEAG  466 (720)
Q Consensus       435 DVVIIGS-GiAGLvAA~~LAea~G~KVLVLEKG  466 (720)
                      .|.|||+ |..|...|..|+++ |++|+++++.
T Consensus        13 ~I~iIG~tG~mG~~la~~l~~~-g~~V~~~~r~   44 (286)
T 3c24_A           13 TVAILGAGGKMGARITRKIHDS-AHHLAAIEIA   44 (286)
T ss_dssp             EEEEETTTSHHHHHHHHHHHHS-SSEEEEECCS
T ss_pred             EEEEECCCCHHHHHHHHHHHhC-CCEEEEEECC
Confidence            6999999 99999999999999 9999999985

>2g5c_A Prephenate dehydrogenase; TYRA, oxidoreductase; HET: NAD; 1.90A {Aquifex aeolicus} SCOP: a.100.1.12 c.2.1.6

Probab=86.75  E-value=0.55  Score=47.65  Aligned_cols=31  Identities=23%  Similarity=0.402  Sum_probs=28.8

Q ss_pred             cEEEECCcHHHHHHHHHHHhcCCC--cEEEEccC
Q psy14408        435 DIIIVGASAAGCVLANRLSEVSSL--KVLLIEAG  466 (720)
Q Consensus       435 DVVIIGSGiAGLvAA~~LAea~G~--KVLVLEKG  466 (720)
                      .|.|||+|..|...|..|++. |+  +|+++|+.
T Consensus         3 ~I~iIG~G~mG~~~a~~l~~~-g~~~~V~~~d~~   35 (281)
T 2g5c_A            3 NVLIVGVGFMGGSFAKSLRRS-GFKGKIYGYDIN   35 (281)
T ss_dssp             EEEEESCSHHHHHHHHHHHHT-TCCSEEEEECSC
T ss_pred             EEEEEecCHHHHHHHHHHHhc-CCCcEEEEEeCC
Confidence            489999999999999999998 98  89999985

>3qsg_A NAD-binding phosphogluconate dehydrogenase-like P; structural genomics, PSI-biology, midwest center for structu genomics; 1.90A {Alicyclobacillus acidocaldarius subsp}

Probab=86.74  E-value=0.48  Score=49.44  Aligned_cols=32  Identities=16%  Similarity=0.281  Sum_probs=30.1

Q ss_pred             ccEEEECCcHHHHHHHHHHHhcCCC-cEEEEccC
Q psy14408        434 FDIIIVGASAAGCVLANRLSEVSSL-KVLLIEAG  466 (720)
Q Consensus       434 yDVVIIGSGiAGLvAA~~LAea~G~-KVLVLEKG  466 (720)
                      -.|.|||.|..|...|..|+++ |+ +|+++++.
T Consensus        25 ~~I~iIG~G~mG~~~A~~L~~~-G~~~V~~~dr~   57 (312)
T 3qsg_A           25 MKLGFIGFGEAASAIASGLRQA-GAIDMAAYDAA   57 (312)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHH-SCCEEEEECSS
T ss_pred             CEEEEECccHHHHHHHHHHHHC-CCCeEEEEcCC
Confidence            3699999999999999999999 99 99999995

>3iwa_A FAD-dependent pyridine nucleotide-disulphide oxidoreductase; structural genomics, PSI-2, protein structur initiative; 2.30A {Desulfovibrio vulgaris}

Probab=86.72  E-value=0.43  Score=52.17  Aligned_cols=36  Identities=19%  Similarity=0.321  Sum_probs=31.8

Q ss_pred             ccEEEECCcHHHHHHHHHHHhcCCCcEEEEccCCCC
Q psy14408        434 FDIIIVGASAAGCVLANRLSEVSSLKVLLIEAGGDT  469 (720)
Q Consensus       434 yDVVIIGSGiAGLvAA~~LAea~G~KVLVLEKG~~~  469 (720)
                      -.|+|||+|..|+-+|..|++..|.+|+|+|++...
T Consensus       160 ~~vvViGgG~~g~e~A~~l~~~~g~~Vtlv~~~~~~  195 (472)
T 3iwa_A          160 SKAVIVGGGFIGLEMAVSLADMWGIDTTVVELADQI  195 (472)
T ss_dssp             SEEEEECCSHHHHHHHHHHHHHHCCEEEEECSSSSS
T ss_pred             CEEEEECCCHHHHHHHHHHHHhcCCcEEEEEccCcc
Confidence            389999999999999999988548999999998654

>3l6d_A Putative oxidoreductase; structural genomics, protein structure initiative, oxidoredu PSI-2; HET: MSE; 1.90A {Pseudomonas putida}

Probab=86.69  E-value=0.55  Score=48.79  Aligned_cols=33  Identities=24%  Similarity=0.453  Sum_probs=30.5

Q ss_pred             ccEEEECCcHHHHHHHHHHHhcCCCcEEEEccCC
Q psy14408        434 FDIIIVGASAAGCVLANRLSEVSSLKVLLIEAGG  467 (720)
Q Consensus       434 yDVVIIGSGiAGLvAA~~LAea~G~KVLVLEKG~  467 (720)
                      -.|.|||.|..|...|..|+++ |++|++.+|..
T Consensus        10 ~~IgiIG~G~mG~~~A~~l~~~-G~~V~~~dr~~   42 (306)
T 3l6d_A           10 FDVSVIGLGAMGTIMAQVLLKQ-GKRVAIWNRSP   42 (306)
T ss_dssp             CSEEEECCSHHHHHHHHHHHHT-TCCEEEECSSH
T ss_pred             CeEEEECCCHHHHHHHHHHHHC-CCEEEEEeCCH
Confidence            3799999999999999999999 99999999863

>3ond_A Adenosylhomocysteinase; plant protein, enzyme-substrate complex, NAD cofactor, regul SAM-dependent methylation reactions; HET: NAD ADN; 1.17A {Lupinus luteus} PDB: 3one_A* 3onf_A*

Probab=86.67  E-value=0.5  Score=53.12  Aligned_cols=32  Identities=19%  Similarity=0.236  Sum_probs=29.8

Q ss_pred             ccEEEECCcHHHHHHHHHHHhcCCCcEEEEccC
Q psy14408        434 FDIIIVGASAAGCVLANRLSEVSSLKVLLIEAG  466 (720)
Q Consensus       434 yDVVIIGSGiAGLvAA~~LAea~G~KVLVLEKG  466 (720)
                      --|+|+|+|..|..+|..|++. |.+|+|+|+.
T Consensus       266 KtVvVtGaGgIG~aiA~~Laa~-GA~Viv~D~~  297 (488)
T 3ond_A          266 KVAVVAGYGDVGKGCAAALKQA-GARVIVTEID  297 (488)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHT-TCEEEEECSC
T ss_pred             CEEEEECCCHHHHHHHHHHHHC-CCEEEEEcCC
Confidence            3699999999999999999999 9999999975

>3phh_A Shikimate dehydrogenase; shikimate pathway, helicobacter PYL oxidoreductase, alpha/beta domain, rossmann fold; HET: SKM; 1.42A {Helicobacter pylori} PDB: 3phg_A* 3phi_A* 3phj_A* 4foo_A 4fpx_A 4fos_A* 4fr5_A* 4fq8_A*

Probab=86.62  E-value=0.6  Score=48.45  Aligned_cols=33  Identities=24%  Similarity=0.384  Sum_probs=30.6

Q ss_pred             ccEEEECCcHHHHHHHHHHHhcCCCcEEEEccCC
Q psy14408        434 FDIIIVGASAAGCVLANRLSEVSSLKVLLIEAGG  467 (720)
Q Consensus       434 yDVVIIGSGiAGLvAA~~LAea~G~KVLVLEKG~  467 (720)
                      -.|+|||+|-+|.++|..|++. |.+|+|+.|..
T Consensus       119 k~vlvlGaGGaaraia~~L~~~-G~~v~V~nRt~  151 (269)
T 3phh_A          119 QNALILGAGGSAKALACELKKQ-GLQVSVLNRSS  151 (269)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHT-TCEEEEECSSC
T ss_pred             CEEEEECCCHHHHHHHHHHHHC-CCEEEEEeCCH
Confidence            4799999999999999999999 99999999874

>1vpd_A Tartronate semialdehyde reductase; structural genomics, MCSG, protein structure initiative, PSI, midwest center for structural genomics; HET: MSE TLA; 1.65A {Salmonella typhimurium} SCOP: a.100.1.1 c.2.1.6

Probab=86.58  E-value=0.47  Score=48.41  Aligned_cols=31  Identities=10%  Similarity=0.263  Sum_probs=29.4

Q ss_pred             cEEEECCcHHHHHHHHHHHhcCCCcEEEEccC
Q psy14408        435 DIIIVGASAAGCVLANRLSEVSSLKVLLIEAG  466 (720)
Q Consensus       435 DVVIIGSGiAGLvAA~~LAea~G~KVLVLEKG  466 (720)
                      .|.|||+|..|...|..|++. |++|+++++.
T Consensus         7 ~i~iiG~G~~G~~~a~~l~~~-g~~V~~~~~~   37 (299)
T 1vpd_A            7 KVGFIGLGIMGKPMSKNLLKA-GYSLVVSDRN   37 (299)
T ss_dssp             EEEEECCSTTHHHHHHHHHHT-TCEEEEECSC
T ss_pred             eEEEECchHHHHHHHHHHHhC-CCEEEEEeCC
Confidence            699999999999999999999 9999999985

>2aef_A Calcium-gated potassium channel MTHK; rossmann fold, helix-turn-helix, Ca2+ binding, flexible interface; 1.70A {Methanothermobacterthermautotrophicus} PDB: 2aej_A 2aem_A 3rbx_A 2ogu_A 2fy8_A 3kxd_A

Probab=86.50  E-value=0.28  Score=48.53  Aligned_cols=31  Identities=19%  Similarity=0.243  Sum_probs=29.0

Q ss_pred             cEEEECCcHHHHHHHHHHHhcCCCcEEEEccCC
Q psy14408        435 DIIIVGASAAGCVLANRLSEVSSLKVLLIEAGG  467 (720)
Q Consensus       435 DVVIIGSGiAGLvAA~~LAea~G~KVLVLEKG~  467 (720)
                      .|||||+|-.|..+|..|.+. |+ |+|+|+..
T Consensus        11 ~viI~G~G~~G~~la~~L~~~-g~-v~vid~~~   41 (234)
T 2aef_A           11 HVVICGWSESTLECLRELRGS-EV-FVLAEDEN   41 (234)
T ss_dssp             EEEEESCCHHHHHHHHHSTTS-EE-EEEESCGG
T ss_pred             EEEEECCChHHHHHHHHHHhC-Ce-EEEEECCH
Confidence            699999999999999999998 99 99999863

>2ywl_A Thioredoxin reductase related protein; uncharacterized conserved protein, rossmann fold, structural genomics, NPPSFA; HET: FAD; 1.60A {Thermus thermophilus} PDB: 2cvj_A*

Probab=86.49  E-value=1.2  Score=41.57  Aligned_cols=60  Identities=23%  Similarity=0.138  Sum_probs=41.4

Q ss_pred             HHHHHHHhcCCCeEEEcCeEEEEEEEccCCcEEEEEEEecCCcEEEEEcCcEEEEccCCcchHHHHHHcCCC
Q psy14408        638 AYLTPIAGKRTNLYVLKRSKVTKVIINDQNVATGVEYVNSKGETVRVTANKEVILTAGAIANAQLLLLSGIG  709 (720)
Q Consensus       638 a~L~~Aa~e~aGVkIi~gt~VtkIl~e~gGrAtGV~v~dt~G~e~tIkAkK~VVVAAGa~~Sp~LLl~SGIg  709 (720)
                      .++.+.+ ++.|++++.+ +|++|..+ ++.   +.+...+|   +++++ .||+|+|...  .++...|+.
T Consensus        60 ~~l~~~~-~~~gv~v~~~-~v~~i~~~-~~~---~~v~~~~g---~i~ad-~vI~A~G~~~--~~~~~~g~~  119 (180)
T 2ywl_A           60 RRLEAHA-RRYGAEVRPG-VVKGVRDM-GGV---FEVETEEG---VEKAE-RLLLCTHKDP--TLPSLLGLT  119 (180)
T ss_dssp             HHHHHHH-HHTTCEEEEC-CCCEEEEC-SSS---EEEECSSC---EEEEE-EEEECCTTCC--HHHHHHTCC
T ss_pred             HHHHHHH-HHcCCEEEeC-EEEEEEEc-CCE---EEEEECCC---EEEEC-EEEECCCCCC--CccccCCCC
Confidence            4555555 5789999999 99999876 443   23333234   68897 5999999753  566777764

>2gf2_A Hibadh, 3-hydroxyisobutyrate dehydrogenase; structural genomics, structural genomics consortium, SGC, oxidoreductase; 2.38A {Homo sapiens} PDB: 2i9p_A*

Probab=86.49  E-value=0.52  Score=48.04  Aligned_cols=32  Identities=13%  Similarity=0.214  Sum_probs=29.6

Q ss_pred             cEEEECCcHHHHHHHHHHHhcCCCcEEEEccCC
Q psy14408        435 DIIIVGASAAGCVLANRLSEVSSLKVLLIEAGG  467 (720)
Q Consensus       435 DVVIIGSGiAGLvAA~~LAea~G~KVLVLEKG~  467 (720)
                      .|.|||+|..|...|..|++. |++|+++++..
T Consensus         2 ~i~iiG~G~mG~~~a~~l~~~-g~~V~~~~~~~   33 (296)
T 2gf2_A            2 PVGFIGLGNMGNPMAKNLMKH-GYPLIIYDVFP   33 (296)
T ss_dssp             CEEEECCSTTHHHHHHHHHHT-TCCEEEECSST
T ss_pred             eEEEEeccHHHHHHHHHHHHC-CCEEEEEeCCH
Confidence            489999999999999999999 99999999863

>1nvt_A Shikimate 5'-dehydrogenase; structural genomics, PSI, protein structure initiative; HET: NAP; 2.35A {Methanocaldococcus jannaschii} SCOP: c.2.1.7 c.58.1.5

Probab=86.35  E-value=0.44  Score=49.16  Aligned_cols=30  Identities=23%  Similarity=0.408  Sum_probs=28.3

Q ss_pred             cEEEECCcHHHHHHHHHHHhcCCCcEEEEccC
Q psy14408        435 DIIIVGASAAGCVLANRLSEVSSLKVLLIEAG  466 (720)
Q Consensus       435 DVVIIGSGiAGLvAA~~LAea~G~KVLVLEKG  466 (720)
                      -|+|+|+|-.|.++|..|+++ | +|+|++|.
T Consensus       130 ~vlV~GaGgiG~aia~~L~~~-G-~V~v~~r~  159 (287)
T 1nvt_A          130 NIVIYGAGGAARAVAFELAKD-N-NIIIANRT  159 (287)
T ss_dssp             EEEEECCSHHHHHHHHHHTSS-S-EEEEECSS
T ss_pred             EEEEECchHHHHHHHHHHHHC-C-CEEEEECC
Confidence            699999999999999999999 9 99999885

>3ggo_A Prephenate dehydrogenase; TYRA, HPP, NADH, alpha-beta, oxidoreductase; HET: NAI ENO; 2.15A {Aquifex aeolicus} PDB: 3ggg_D* 3ggp_A*

Probab=86.33  E-value=0.57  Score=49.20  Aligned_cols=32  Identities=22%  Similarity=0.373  Sum_probs=29.9

Q ss_pred             cEEEECCcHHHHHHHHHHHhcCCC--cEEEEccCC
Q psy14408        435 DIIIVGASAAGCVLANRLSEVSSL--KVLLIEAGG  467 (720)
Q Consensus       435 DVVIIGSGiAGLvAA~~LAea~G~--KVLVLEKG~  467 (720)
                      .|.|||.|..|.+.|..|+++ |+  +|+++|+..
T Consensus        35 kI~IIG~G~mG~slA~~l~~~-G~~~~V~~~dr~~   68 (314)
T 3ggo_A           35 NVLIVGVGFMGGSFAKSLRRS-GFKGKIYGYDINP   68 (314)
T ss_dssp             EEEEESCSHHHHHHHHHHHHT-TCCSEEEEECSCH
T ss_pred             EEEEEeeCHHHHHHHHHHHhC-CCCCEEEEEECCH
Confidence            699999999999999999999 99  999999863

>2vhw_A Alanine dehydrogenase; NAD, secreted, oxidoreductase; HET: NAI; 2.0A {Mycobacterium tuberculosis} PDB: 2vhx_A* 2vhy_A 2vhz_A* 2vhv_A* 2voe_A 2voj_A*

Probab=86.31  E-value=0.54  Score=50.68  Aligned_cols=32  Identities=22%  Similarity=0.407  Sum_probs=29.6

Q ss_pred             ccEEEECCcHHHHHHHHHHHhcCCCcEEEEccC
Q psy14408        434 FDIIIVGASAAGCVLANRLSEVSSLKVLLIEAG  466 (720)
Q Consensus       434 yDVVIIGSGiAGLvAA~~LAea~G~KVLVLEKG  466 (720)
                      -.|+|||+|..|+.+|..|... |.+|+++|+.
T Consensus       169 ~~V~ViG~G~iG~~~a~~a~~~-Ga~V~~~d~~  200 (377)
T 2vhw_A          169 ADVVVIGAGTAGYNAARIANGM-GATVTVLDIN  200 (377)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHT-TCEEEEEESC
T ss_pred             CEEEEECCCHHHHHHHHHHHhC-CCEEEEEeCC
Confidence            4799999999999999999988 9999999975

>2dkn_A 3-alpha-hydroxysteroid dehydrogenase; oxidoreductase, rossmann fold; HET: NAI; 1.80A {Pseudomonas SP}

Probab=86.27  E-value=0.61  Score=45.61  Aligned_cols=31  Identities=32%  Similarity=0.474  Sum_probs=28.5

Q ss_pred             EEEECC-cHHHHHHHHHHHhcCCCcEEEEccCC
Q psy14408        436 IIIVGA-SAAGCVLANRLSEVSSLKVLLIEAGG  467 (720)
Q Consensus       436 VVIIGS-GiAGLvAA~~LAea~G~KVLVLEKG~  467 (720)
                      |+|.|| |..|..+|.+|+++ |++|++++|..
T Consensus         4 vlVtGasg~iG~~l~~~L~~~-g~~V~~~~r~~   35 (255)
T 2dkn_A            4 IAITGSASGIGAALKELLARA-GHTVIGIDRGQ   35 (255)
T ss_dssp             EEEETTTSHHHHHHHHHHHHT-TCEEEEEESSS
T ss_pred             EEEeCCCcHHHHHHHHHHHhC-CCEEEEEeCCh
Confidence            789987 99999999999999 99999999864

>3tl2_A Malate dehydrogenase; center for structural genomics of infectious diseases, csgid dehydrogenase, oxidoreductase, citric acid cycle; 1.70A {Bacillus anthracis}

Probab=86.25  E-value=0.55  Score=49.66  Aligned_cols=32  Identities=25%  Similarity=0.394  Sum_probs=30.0

Q ss_pred             ccEEEECCcHHHHHHHHHHHhcCCC-cEEEEccC
Q psy14408        434 FDIIIVGASAAGCVLANRLSEVSSL-KVLLIEAG  466 (720)
Q Consensus       434 yDVVIIGSGiAGLvAA~~LAea~G~-KVLVLEKG  466 (720)
                      -.|.|||+|..|.++|..|+.. |+ .|+|+|+.
T Consensus         9 ~kv~ViGaG~vG~~ia~~l~~~-g~~~v~l~D~~   41 (315)
T 3tl2_A            9 KKVSVIGAGFTGATTAFLLAQK-ELADVVLVDIP   41 (315)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHT-TCCEEEEECCG
T ss_pred             CEEEEECCCHHHHHHHHHHHhC-CCCeEEEEecc
Confidence            3699999999999999999999 99 99999986

>1pgj_A 6PGDH, 6-PGDH, 6-phosphogluconate dehydrogenase; oxidoreductase, CHOH(D)-NADP+(B); 2.82A {Trypanosoma brucei} SCOP: a.100.1.1 c.2.1.6

Probab=86.12  E-value=0.59  Score=52.07  Aligned_cols=31  Identities=29%  Similarity=0.423  Sum_probs=29.5

Q ss_pred             cEEEECCcHHHHHHHHHHHhcCCCcEEEEccC
Q psy14408        435 DIIIVGASAAGCVLANRLSEVSSLKVLLIEAG  466 (720)
Q Consensus       435 DVVIIGSGiAGLvAA~~LAea~G~KVLVLEKG  466 (720)
                      +|.|||+|..|...|..|+++ |++|+|++|.
T Consensus         3 kIgVIG~G~mG~~lA~~La~~-G~~V~v~dr~   33 (478)
T 1pgj_A            3 DVGVVGLGVMGANLALNIAEK-GFKVAVFNRT   33 (478)
T ss_dssp             SEEEECCSHHHHHHHHHHHHT-TCCEEEECSS
T ss_pred             EEEEEChHHHHHHHHHHHHHC-CCEEEEEeCC
Confidence            699999999999999999999 9999999985

>3o38_A Short chain dehydrogenase; tuberculosis, ortholog from A non-pathogenic dehydrogenase, structural genomics; 1.95A {Mycobacterium smegmatis}

Probab=85.97  E-value=0.43  Score=47.74  Aligned_cols=31  Identities=16%  Similarity=0.205  Sum_probs=28.3

Q ss_pred             cEEEECC-c-HHHHHHHHHHHhcCCCcEEEEccC
Q psy14408        435 DIIIVGA-S-AAGCVLANRLSEVSSLKVLLIEAG  466 (720)
Q Consensus       435 DVVIIGS-G-iAGLvAA~~LAea~G~KVLVLEKG  466 (720)
                      -|+|.|| | -.|..+|.+|+++ |++|++++|.
T Consensus        24 ~vlITGasg~GIG~~~a~~l~~~-G~~V~~~~r~   56 (266)
T 3o38_A           24 VVLVTAAAGTGIGSTTARRALLE-GADVVISDYH   56 (266)
T ss_dssp             EEEESSCSSSSHHHHHHHHHHHT-TCEEEEEESC
T ss_pred             EEEEECCCCCchHHHHHHHHHHC-CCEEEEecCC
Confidence            5899998 7 5999999999999 9999999986

>1wdk_A Fatty oxidation complex alpha subunit; alpha2BETA2 heterotetrameric complex, lyase, oxidoreductase/transferase complex, lyase; HET: ACO NAD N8E; 2.50A {Pseudomonas fragi} SCOP: a.100.1.3 a.100.1.3 c.2.1.6 c.14.1.3 PDB: 1wdl_A* 1wdm_A* 2d3t_A*

Probab=85.93  E-value=0.52  Score=55.25  Aligned_cols=31  Identities=16%  Similarity=0.268  Sum_probs=29.5

Q ss_pred             cEEEECCcHHHHHHHHHHHhcCCCcEEEEccC
Q psy14408        435 DIIIVGASAAGCVLANRLSEVSSLKVLLIEAG  466 (720)
Q Consensus       435 DVVIIGSGiAGLvAA~~LAea~G~KVLVLEKG  466 (720)
                      .|.|||+|..|...|..|+++ |++|+|+|+.
T Consensus       316 kV~VIGaG~MG~~iA~~la~a-G~~V~l~D~~  346 (715)
T 1wdk_A          316 QAAVLGAGIMGGGIAYQSASK-GTPILMKDIN  346 (715)
T ss_dssp             SEEEECCHHHHHHHHHHHHHT-TCCEEEECSS
T ss_pred             EEEEECCChhhHHHHHHHHhC-CCEEEEEECC
Confidence            599999999999999999999 9999999975

>4e21_A 6-phosphogluconate dehydrogenase (decarboxylating; structural genomics, PSI-biology, NEW YORK structural genomi research consortium; 2.30A {Geobacter metallireducens}

Probab=85.91  E-value=0.6  Score=50.15  Aligned_cols=33  Identities=15%  Similarity=0.275  Sum_probs=30.7

Q ss_pred             ccEEEECCcHHHHHHHHHHHhcCCCcEEEEccCC
Q psy14408        434 FDIIIVGASAAGCVLANRLSEVSSLKVLLIEAGG  467 (720)
Q Consensus       434 yDVVIIGSGiAGLvAA~~LAea~G~KVLVLEKG~  467 (720)
                      ..|.|||.|..|...|..|+++ |++|+++++..
T Consensus        23 mkIgiIGlG~mG~~~A~~L~~~-G~~V~v~dr~~   55 (358)
T 4e21_A           23 MQIGMIGLGRMGADMVRRLRKG-GHECVVYDLNV   55 (358)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHT-TCEEEEECSCH
T ss_pred             CEEEEECchHHHHHHHHHHHhC-CCEEEEEeCCH
Confidence            4799999999999999999999 99999999853

>1gte_A Dihydropyrimidine dehydrogenase; electron transfer, flavin, iron-sulfur clusters, pyrimidine catabolism, 5-fluorouracil degradation, oxidoreductase; HET: FMN FAD; 1.65A {Sus scrofa} SCOP: a.1.2.2 c.1.4.1 c.3.1.1 c.4.1.1 d.58.1.5 PDB: 1gt8_A* 1gth_A* 1h7w_A* 1h7x_A*

Probab=85.86  E-value=0.53  Score=57.19  Aligned_cols=32  Identities=22%  Similarity=0.334  Sum_probs=30.1

Q ss_pred             cEEEECCcHHHHHHHHHHHhcCCC-cEEEEccCC
Q psy14408        435 DIIIVGASAAGCVLANRLSEVSSL-KVLLIEAGG  467 (720)
Q Consensus       435 DVVIIGSGiAGLvAA~~LAea~G~-KVLVLEKG~  467 (720)
                      .|||||||..|+-+|..|++. |. +|+||++..
T Consensus       334 ~VvVIGgG~~g~e~A~~~~~~-G~~~Vtvv~r~~  366 (1025)
T 1gte_A          334 AVIVLGAGDTAFDCATSALRC-GARRVFLVFRKG  366 (1025)
T ss_dssp             EEEEECSSHHHHHHHHHHHHT-TCSEEEEECSSC
T ss_pred             cEEEECCChHHHHHHHHHHHc-CCCEEEEEEecC
Confidence            899999999999999999999 96 899999875

>3rui_A Ubiquitin-like modifier-activating enzyme ATG7; autophagosome formation, non-canonical E1, ATP BI UBL, ATG8, ATG12, ATG10, ATG3, UBL activation, thiolation; 1.91A {Saccharomyces cerevisiae} PDB: 3t7e_A 3vh3_A 3vh4_A*

Probab=85.80  E-value=0.62  Score=50.05  Aligned_cols=36  Identities=19%  Similarity=0.490  Sum_probs=31.1

Q ss_pred             CcccEEEECCcHHHHHHHHHHHhcCCC-cEEEEccCCC
Q psy14408        432 DCFDIIIVGASAAGCVLANRLSEVSSL-KVLLIEAGGD  468 (720)
Q Consensus       432 ~eyDVVIIGSGiAGLvAA~~LAea~G~-KVLVLEKG~~  468 (720)
                      ...-|+|||+|-.|+.+|..||+. |. +++|+|....
T Consensus        33 ~~~~VlIvGaGGlGs~va~~La~a-GVg~ItlvD~D~V   69 (340)
T 3rui_A           33 KNTKVLLLGAGTLGCYVSRALIAW-GVRKITFVDNGTV   69 (340)
T ss_dssp             HTCEEEEECCSHHHHHHHHHHHHT-TCCEEEEECCCBC
T ss_pred             hCCEEEEECCCHHHHHHHHHHHHc-CCCEEEEecCCEe
Confidence            345899999999999999999999 86 6889998643

>2pgd_A 6-phosphogluconate dehydrogenase; oxidoreductase (CHOH(D)-NADP+(A)); 2.00A {Ovis aries} SCOP: a.100.1.1 c.2.1.6 PDB: 1pgo_A* 1pgp_A* 1pgq_A* 1pgn_A 2jkv_A*

Probab=85.79  E-value=0.64  Score=51.71  Aligned_cols=32  Identities=19%  Similarity=0.261  Sum_probs=30.0

Q ss_pred             cEEEECCcHHHHHHHHHHHhcCCCcEEEEccCC
Q psy14408        435 DIIIVGASAAGCVLANRLSEVSSLKVLLIEAGG  467 (720)
Q Consensus       435 DVVIIGSGiAGLvAA~~LAea~G~KVLVLEKG~  467 (720)
                      +|.|||.|..|...|..|+++ |++|+|++|..
T Consensus         4 ~IgvIG~G~mG~~lA~~La~~-G~~V~v~dr~~   35 (482)
T 2pgd_A            4 DIALIGLAVMGQNLILNMNDH-GFVVCAFNRTV   35 (482)
T ss_dssp             SEEEECCSHHHHHHHHHHHHT-TCCEEEECSST
T ss_pred             eEEEEChHHHHHHHHHHHHHC-CCeEEEEeCCH
Confidence            799999999999999999999 99999999853

>1m6i_A Programmed cell death protein 8; apoptosis, AIF, oxidoreductase; HET: FAD; 1.80A {Homo sapiens} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 3gd3_A* 3gd4_A* 1gv4_A*

Probab=85.77  E-value=0.62  Score=51.59  Aligned_cols=34  Identities=24%  Similarity=0.267  Sum_probs=29.4

Q ss_pred             cEEEECCcHHHHHHHHHHHhc---CCCcEEEEccCCC
Q psy14408        435 DIIIVGASAAGCVLANRLSEV---SSLKVLLIEAGGD  468 (720)
Q Consensus       435 DVVIIGSGiAGLvAA~~LAea---~G~KVLVLEKG~~  468 (720)
                      .|||||+|..|+-+|..|++.   .|.+|+++++...
T Consensus       182 ~vvViGgG~iG~E~A~~l~~~~~~~g~~V~~v~~~~~  218 (493)
T 1m6i_A          182 SITIIGGGFLGSELACALGRKARALGTEVIQLFPEKG  218 (493)
T ss_dssp             EEEEECCSHHHHHHHHHHHHHHHHHTCEEEEECSSSS
T ss_pred             eEEEECCCHHHHHHHHHHHhhhhhcCCEEEEEecCcc
Confidence            799999999999999999872   2789999998753

>1o94_A Tmadh, trimethylamine dehydrogenase; electron transport, protein complex; HET: FMN ADP AMP; 2.0A {Methylophilus methylotrophus} SCOP: c.1.4.1 c.3.1.1 c.4.1.1 PDB: 1djn_A* 1o95_A* 2tmd_A* 1djq_A*

Probab=85.74  E-value=0.46  Score=55.45  Aligned_cols=32  Identities=16%  Similarity=0.241  Sum_probs=30.6

Q ss_pred             cEEEEC--CcHHHHHHHHHHHhcCCCcEEEEccCC
Q psy14408        435 DIIIVG--ASAAGCVLANRLSEVSSLKVLLIEAGG  467 (720)
Q Consensus       435 DVVIIG--SGiAGLvAA~~LAea~G~KVLVLEKG~  467 (720)
                      .|||||  +|..|+-+|..|++. |.+|+|||++.
T Consensus       530 ~VvVIG~GgG~~g~e~A~~l~~~-G~~Vtlv~~~~  563 (729)
T 1o94_A          530 RVVILNADTYFMAPSLAEKLATA-GHEVTIVSGVH  563 (729)
T ss_dssp             EEEEEECCCSSHHHHHHHHHHHT-TCEEEEEESSC
T ss_pred             eEEEEcCCCCchHHHHHHHHHHc-CCEEEEEeccc
Confidence            799999  999999999999999 99999999986

>2p4q_A 6-phosphogluconate dehydrogenase, decarboxylating; rossmann fold, oxidoreductase; HET: FLC; 2.37A {Saccharomyces cerevisiae}

Probab=85.69  E-value=0.7  Score=51.85  Aligned_cols=34  Identities=15%  Similarity=0.145  Sum_probs=31.2

Q ss_pred             cccEEEECCcHHHHHHHHHHHhcCCCcEEEEccCC
Q psy14408        433 CFDIIIVGASAAGCVLANRLSEVSSLKVLLIEAGG  467 (720)
Q Consensus       433 eyDVVIIGSGiAGLvAA~~LAea~G~KVLVLEKG~  467 (720)
                      ...|.|||.|..|...|..|+++ |++|+|.+|..
T Consensus        10 ~~~IgvIGlG~MG~~lA~~La~~-G~~V~v~dr~~   43 (497)
T 2p4q_A           10 SADFGLIGLAVMGQNLILNAADH-GFTVCAYNRTQ   43 (497)
T ss_dssp             CCSEEEECCSHHHHHHHHHHHHT-TCCEEEECSSS
T ss_pred             CCCEEEEeeHHHHHHHHHHHHHC-CCEEEEEeCCH
Confidence            35899999999999999999999 99999999863

>3dhn_A NAD-dependent epimerase/dehydratase; reductase, PF01370, Q89Z24_bactn, NESG, BTR310, structural genomics, PSI-2; 2.00A {Bacteroides thetaiotaomicron}

Probab=85.68  E-value=0.62  Score=44.96  Aligned_cols=32  Identities=22%  Similarity=0.337  Sum_probs=29.5

Q ss_pred             cEEEECC-cHHHHHHHHHHHhcCCCcEEEEccCC
Q psy14408        435 DIIIVGA-SAAGCVLANRLSEVSSLKVLLIEAGG  467 (720)
Q Consensus       435 DVVIIGS-GiAGLvAA~~LAea~G~KVLVLEKG~  467 (720)
                      .|+|+|| |..|..++.+|+++ |++|.++.|..
T Consensus         6 ~ilItGatG~iG~~l~~~L~~~-g~~V~~~~r~~   38 (227)
T 3dhn_A            6 KIVLIGASGFVGSALLNEALNR-GFEVTAVVRHP   38 (227)
T ss_dssp             EEEEETCCHHHHHHHHHHHHTT-TCEEEEECSCG
T ss_pred             EEEEEcCCchHHHHHHHHHHHC-CCEEEEEEcCc
Confidence            5999995 99999999999999 99999999973

>1ur5_A Malate dehydrogenase; oxidoreductase, tricarboxylic acid cycle; HET: NAD; 1.75A {Chloroflexus aurantiacus} SCOP: c.2.1.5 d.162.1.1 PDB: 1uxg_A* 1guy_A* 1uxk_A* 1uxh_A* 1uxj_A* 1uxi_A*

Probab=85.66  E-value=0.67  Score=48.57  Aligned_cols=32  Identities=28%  Similarity=0.439  Sum_probs=29.3

Q ss_pred             cEEEECCcHHHHHHHHHHHhcCCC-cEEEEccCC
Q psy14408        435 DIIIVGASAAGCVLANRLSEVSSL-KVLLIEAGG  467 (720)
Q Consensus       435 DVVIIGSGiAGLvAA~~LAea~G~-KVLVLEKG~  467 (720)
                      .|.|||+|..|..+|..|+.. |+ +|+|+|...
T Consensus         4 kI~VIGaG~vG~~~a~~la~~-g~~~v~L~Di~~   36 (309)
T 1ur5_A            4 KISIIGAGFVGSTTAHWLAAK-ELGDIVLLDIVE   36 (309)
T ss_dssp             EEEEECCSHHHHHHHHHHHHT-TCSEEEEECSSS
T ss_pred             EEEEECCCHHHHHHHHHHHHC-CCCeEEEEeCCc
Confidence            599999999999999999999 87 999999763

>2hk9_A Shikimate dehydrogenase; shikimate pathway, drug design, oxidoreductase; HET: ATR SKM NAP; 2.20A {Aquifex aeolicus} PDB: 2hk8_A 2hk7_A

Probab=85.65  E-value=0.63  Score=47.69  Aligned_cols=31  Identities=26%  Similarity=0.359  Sum_probs=29.5

Q ss_pred             cEEEECCcHHHHHHHHHHHhcCCCcEEEEccC
Q psy14408        435 DIIIVGASAAGCVLANRLSEVSSLKVLLIEAG  466 (720)
Q Consensus       435 DVVIIGSGiAGLvAA~~LAea~G~KVLVLEKG  466 (720)
                      .|+|||+|.+|.++|..|++. |.+|+|++|.
T Consensus       131 ~v~iiGaG~~g~aia~~L~~~-g~~V~v~~r~  161 (275)
T 2hk9_A          131 SILVLGAGGASRAVIYALVKE-GAKVFLWNRT  161 (275)
T ss_dssp             EEEEECCSHHHHHHHHHHHHH-TCEEEEECSS
T ss_pred             EEEEECchHHHHHHHHHHHHc-CCEEEEEECC
Confidence            699999999999999999999 9999999986

>3r6d_A NAD-dependent epimerase/dehydratase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, veillo parvula; HET: MLZ; 1.25A {Veillonella parvula dsm 2008} PDB: 4hng_A 4hnh_A* 3r14_A*

Probab=85.64  E-value=0.7  Score=44.66  Aligned_cols=30  Identities=23%  Similarity=0.288  Sum_probs=27.9

Q ss_pred             EEEEC-CcHHHHHHHHHHH-hcCCCcEEEEccC
Q psy14408        436 IIIVG-ASAAGCVLANRLS-EVSSLKVLLIEAG  466 (720)
Q Consensus       436 VVIIG-SGiAGLvAA~~LA-ea~G~KVLVLEKG  466 (720)
                      |+|+| +|..|..+|.+|+ ++ |++|+++.|.
T Consensus         8 vlVtGasg~iG~~~~~~l~~~~-g~~V~~~~r~   39 (221)
T 3r6d_A            8 ITILGAAGQIAQXLTATLLTYT-DMHITLYGRQ   39 (221)
T ss_dssp             EEEESTTSHHHHHHHHHHHHHC-CCEEEEEESS
T ss_pred             EEEEeCCcHHHHHHHHHHHhcC-CceEEEEecC
Confidence            99999 5999999999999 78 9999999986

>3eag_A UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-ME diaminopimelate ligase; UDP-N-acetylmuramate:L-alanyl-G glutamyl-MESO-diaminopimelate ligase; 2.55A {Neisseria meningitidis MC58}

Probab=85.48  E-value=0.64  Score=48.88  Aligned_cols=33  Identities=24%  Similarity=0.109  Sum_probs=29.1

Q ss_pred             cEEEECCcHHHHH-HHHHHHhcCCCcEEEEccCCC
Q psy14408        435 DIIIVGASAAGCV-LANRLSEVSSLKVLLIEAGGD  468 (720)
Q Consensus       435 DVVIIGSGiAGLv-AA~~LAea~G~KVLVLEKG~~  468 (720)
                      .|.|||.|.+|++ +|..|+++ |++|.+.|+...
T Consensus         6 ~i~~iGiGg~Gms~~A~~L~~~-G~~V~~~D~~~~   39 (326)
T 3eag_A            6 HIHIIGIGGTFMGGLAAIAKEA-GFEVSGCDAKMY   39 (326)
T ss_dssp             EEEEESCCSHHHHHHHHHHHHT-TCEEEEEESSCC
T ss_pred             EEEEEEECHHHHHHHHHHHHhC-CCEEEEEcCCCC
Confidence            5899999999996 77888888 999999998743

>3vps_A TUNA, NAD-dependent epimerase/dehydratase; tunicamycins, biosynthesis, EXO-glycal, rossman transferase; HET: UD1 NAD; 1.90A {Streptomyces chartreusis}

Probab=85.45  E-value=0.73  Score=46.59  Aligned_cols=33  Identities=24%  Similarity=0.256  Sum_probs=30.5

Q ss_pred             cEEEECC-cHHHHHHHHHHHhcCCCcEEEEccCCC
Q psy14408        435 DIIIVGA-SAAGCVLANRLSEVSSLKVLLIEAGGD  468 (720)
Q Consensus       435 DVVIIGS-GiAGLvAA~~LAea~G~KVLVLEKG~~  468 (720)
                      -|+|+|| |..|..++.+|+++ |++|+++.|...
T Consensus         9 ~vlVtGatG~iG~~l~~~L~~~-g~~V~~~~r~~~   42 (321)
T 3vps_A            9 RILITGGAGFIGGHLARALVAS-GEEVTVLDDLRV   42 (321)
T ss_dssp             EEEEETTTSHHHHHHHHHHHHT-TCCEEEECCCSS
T ss_pred             eEEEECCCChHHHHHHHHHHHC-CCEEEEEecCCc
Confidence            6999999 99999999999999 999999998754

>3d1l_A Putative NADP oxidoreductase BF3122; structural genomics, PSI-2, protein structure initiative, M center for structural genomics, MCSG; 2.19A {Bacteroides fragilis}

Probab=85.44  E-value=0.69  Score=46.48  Aligned_cols=31  Identities=23%  Similarity=0.344  Sum_probs=29.1

Q ss_pred             cEEEECCcHHHHHHHHHHHhcCCCc-EEEEccC
Q psy14408        435 DIIIVGASAAGCVLANRLSEVSSLK-VLLIEAG  466 (720)
Q Consensus       435 DVVIIGSGiAGLvAA~~LAea~G~K-VLVLEKG  466 (720)
                      .|.|||+|..|...|..|++. |++ |.++++.
T Consensus        12 ~i~iiG~G~mG~~~a~~l~~~-g~~~v~~~~~~   43 (266)
T 3d1l_A           12 PIVLIGAGNLATNLAKALYRK-GFRIVQVYSRT   43 (266)
T ss_dssp             CEEEECCSHHHHHHHHHHHHH-TCCEEEEECSS
T ss_pred             eEEEEcCCHHHHHHHHHHHHC-CCeEEEEEeCC
Confidence            699999999999999999999 999 8999975

>1i36_A Conserved hypothetical protein MTH1747; NADP binding domain, protein NADP complex, structural genomics, PSI; HET: NAP; 2.00A {Methanothermobacterthermautotrophicus} SCOP: a.100.1.8 c.2.1.6

Probab=85.41  E-value=0.57  Score=46.96  Aligned_cols=30  Identities=20%  Similarity=0.246  Sum_probs=27.9

Q ss_pred             cEEEECCcHHHHHHHHHHHhcCCCcEEEEcc
Q psy14408        435 DIIIVGASAAGCVLANRLSEVSSLKVLLIEA  465 (720)
Q Consensus       435 DVVIIGSGiAGLvAA~~LAea~G~KVLVLEK  465 (720)
                      .|.|||+|..|...|..|++. |++|++.++
T Consensus         2 ~I~iIG~G~mG~~la~~l~~~-g~~V~~~~~   31 (264)
T 1i36_A            2 RVGFIGFGEVAQTLASRLRSR-GVEVVTSLE   31 (264)
T ss_dssp             EEEEESCSHHHHHHHHHHHHT-TCEEEECCT
T ss_pred             eEEEEechHHHHHHHHHHHHC-CCeEEEeCC
Confidence            378999999999999999999 999999877

>3h8v_A Ubiquitin-like modifier-activating enzyme 5; rossman fold, ATP-binding, UBL conjugation pathway, transfer structural genomics consortium, SGC; HET: ATP; 2.00A {Homo sapiens} PDB: 3guc_A*

Probab=85.38  E-value=0.65  Score=48.80  Aligned_cols=37  Identities=30%  Similarity=0.469  Sum_probs=32.0

Q ss_pred             CCCcccEEEECCcHHHHHHHHHHHhcCCC-cEEEEccCC
Q psy14408        430 SGDCFDIIIVGASAAGCVLANRLSEVSSL-KVLLIEAGG  467 (720)
Q Consensus       430 ~d~eyDVVIIGSGiAGLvAA~~LAea~G~-KVLVLEKG~  467 (720)
                      .....-|+|||+|-.|..+|..||+. |. +++|+|...
T Consensus        33 kL~~~~VlVvGaGGlGs~va~~La~a-GVG~i~lvD~D~   70 (292)
T 3h8v_A           33 KIRTFAVAIVGVGGVGSVTAEMLTRC-GIGKLLLFDYDK   70 (292)
T ss_dssp             GGGGCEEEEECCSHHHHHHHHHHHHH-TCSEEEEECCCB
T ss_pred             HHhCCeEEEECcCHHHHHHHHHHHHc-CCCEEEEECCCc
Confidence            44557999999999999999999999 85 788999763

>1lu9_A Methylene tetrahydromethanopterin dehydrogenase; alpha/beta twisted open sheet structure, oxidoreductase; 1.90A {Methylobacterium extorquens} SCOP: c.2.1.7 c.58.1.4 PDB: 1lua_A*

Probab=85.30  E-value=0.69  Score=47.47  Aligned_cols=31  Identities=16%  Similarity=0.212  Sum_probs=29.1

Q ss_pred             cEEEEC-CcHHHHHHHHHHHhcCCCcEEEEccC
Q psy14408        435 DIIIVG-ASAAGCVLANRLSEVSSLKVLLIEAG  466 (720)
Q Consensus       435 DVVIIG-SGiAGLvAA~~LAea~G~KVLVLEKG  466 (720)
                      -|+|+| +|-+|..+|..|+++ |.+|+|++|.
T Consensus       121 ~vlVtGaaGGiG~aia~~L~~~-G~~V~i~~R~  152 (287)
T 1lu9_A          121 KAVVLAGTGPVGMRSAALLAGE-GAEVVLCGRK  152 (287)
T ss_dssp             EEEEETCSSHHHHHHHHHHHHT-TCEEEEEESS
T ss_pred             EEEEECCCcHHHHHHHHHHHHC-cCEEEEEECC
Confidence            699999 999999999999999 9999999886

>2iz1_A 6-phosphogluconate dehydrogenase, decarboxylating; pentose shunt, oxidoreductase, gluconate utilization; HET: ATR RES P33; 2.30A {Lactococcus lactis} PDB: 2iz0_A* 2iyp_A* 2iyo_A*

Probab=85.18  E-value=0.78  Score=50.92  Aligned_cols=32  Identities=19%  Similarity=0.198  Sum_probs=30.1

Q ss_pred             ccEEEECCcHHHHHHHHHHHhcCCCcEEEEccC
Q psy14408        434 FDIIIVGASAAGCVLANRLSEVSSLKVLLIEAG  466 (720)
Q Consensus       434 yDVVIIGSGiAGLvAA~~LAea~G~KVLVLEKG  466 (720)
                      .+|.|||.|..|...|..|+++ |++|+|++|.
T Consensus         6 ~~IgvIG~G~mG~~lA~~L~~~-G~~V~v~dr~   37 (474)
T 2iz1_A            6 ANFGVVGMAVMGKNLALNVESR-GYTVAIYNRT   37 (474)
T ss_dssp             BSEEEECCSHHHHHHHHHHHHT-TCCEEEECSS
T ss_pred             CcEEEEeeHHHHHHHHHHHHhC-CCEEEEEcCC
Confidence            4799999999999999999999 9999999985

>3cky_A 2-hydroxymethyl glutarate dehydrogenase; rossmann fold, two domain enzyme, oxidoreductase; 2.30A {Eubacterium barkeri}

Probab=85.08  E-value=0.62  Score=47.55  Aligned_cols=31  Identities=23%  Similarity=0.228  Sum_probs=29.4

Q ss_pred             cEEEECCcHHHHHHHHHHHhcCCCcEEEEccC
Q psy14408        435 DIIIVGASAAGCVLANRLSEVSSLKVLLIEAG  466 (720)
Q Consensus       435 DVVIIGSGiAGLvAA~~LAea~G~KVLVLEKG  466 (720)
                      .|.|||+|..|...|..|++. |++|+++++.
T Consensus         6 ~i~iiG~G~~G~~~a~~l~~~-g~~V~~~~~~   36 (301)
T 3cky_A            6 KIGFIGLGAMGKPMAINLLKE-GVTVYAFDLM   36 (301)
T ss_dssp             EEEEECCCTTHHHHHHHHHHT-TCEEEEECSS
T ss_pred             EEEEECccHHHHHHHHHHHHC-CCeEEEEeCC
Confidence            699999999999999999999 9999999985

>1dlj_A UDP-glucose dehydrogenase; rossmann fold, ternary complex, crystallographic dimer, oxidoreductase; HET: NAI UGA; 1.80A {Streptococcus pyogenes} SCOP: a.100.1.4 c.2.1.6 c.26.3.1 PDB: 1dli_A*

Probab=85.03  E-value=0.56  Score=50.94  Aligned_cols=30  Identities=23%  Similarity=0.273  Sum_probs=27.6

Q ss_pred             cEEEECCcHHHHHHHHHHHhcCCCcEEEEccC
Q psy14408        435 DIIIVGASAAGCVLANRLSEVSSLKVLLIEAG  466 (720)
Q Consensus       435 DVVIIGSGiAGLvAA~~LAea~G~KVLVLEKG  466 (720)
                      .|.|||+|..|+..|..|++  |++|+++|+.
T Consensus         2 kI~VIG~G~vG~~~A~~La~--G~~V~~~d~~   31 (402)
T 1dlj_A            2 KIAVAGSGYVGLSLGVLLSL--QNEVTIVDIL   31 (402)
T ss_dssp             EEEEECCSHHHHHHHHHHTT--TSEEEEECSC
T ss_pred             EEEEECCCHHHHHHHHHHhC--CCEEEEEECC
Confidence            48899999999999999997  8999999974

>1pjq_A CYSG, siroheme synthase; rossman fold, nucleotide binding motif, SAM, NAD, phosphoserine, transferase/oxidoreductase/lyase complex; HET: SEP PGE SAH; 2.21A {Salmonella typhimurium} SCOP: c.2.1.11 c.90.1.1 e.37.1.1 PDB: 1pjs_A* 1pjt_A*

Probab=84.92  E-value=0.6  Score=51.70  Aligned_cols=32  Identities=22%  Similarity=0.174  Sum_probs=29.9

Q ss_pred             ccEEEECCcHHHHHHHHHHHhcCCCcEEEEccC
Q psy14408        434 FDIIIVGASAAGCVLANRLSEVSSLKVLLIEAG  466 (720)
Q Consensus       434 yDVVIIGSGiAGLvAA~~LAea~G~KVLVLEKG  466 (720)
                      --|+|||+|-.|...|..|.+. |.+|+|++..
T Consensus        13 ~~vlVvGgG~va~~k~~~L~~~-ga~V~vi~~~   44 (457)
T 1pjq_A           13 RDCLIVGGGDVAERKARLLLEA-GARLTVNALT   44 (457)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHT-TBEEEEEESS
T ss_pred             CEEEEECCCHHHHHHHHHHHhC-cCEEEEEcCC
Confidence            3699999999999999999999 9999999974

>3jyo_A Quinate/shikimate dehydrogenase; enzyme-cofactor complex, amino-acid biosynthesis, aromatic A biosynthesis, NAD, oxidoreductase; HET: NAD; 1.00A {Corynebacterium glutamicum} PDB: 3jyp_A* 3jyq_A* 2nlo_A

Probab=84.82  E-value=0.76  Score=47.80  Aligned_cols=32  Identities=22%  Similarity=0.313  Sum_probs=29.3

Q ss_pred             ccEEEECCcHHHHHHHHHHHhcCCC-cEEEEccC
Q psy14408        434 FDIIIVGASAAGCVLANRLSEVSSL-KVLLIEAG  466 (720)
Q Consensus       434 yDVVIIGSGiAGLvAA~~LAea~G~-KVLVLEKG  466 (720)
                      --|+|||+|-+|.++|..|++. |. +|+|+.|.
T Consensus       128 k~vlVlGaGG~g~aia~~L~~~-G~~~v~i~~R~  160 (283)
T 3jyo_A          128 DSVVQVGAGGVGNAVAYALVTH-GVQKLQVADLD  160 (283)
T ss_dssp             SEEEEECCSHHHHHHHHHHHHT-TCSEEEEECSS
T ss_pred             CEEEEECCcHHHHHHHHHHHHC-CCCEEEEEECC
Confidence            3799999999999999999999 98 69999886

>2o3j_A UDP-glucose 6-dehydrogenase; structural genomics, PSI-2, prote structure initiative, NEW YORK SGX research center for STRU genomics; 1.88A {Caenorhabditis elegans}

Probab=84.67  E-value=0.6  Score=52.00  Aligned_cols=32  Identities=16%  Similarity=0.325  Sum_probs=28.9

Q ss_pred             cEEEECCcHHHHHHHHHHHhcC-CCcEEEEccC
Q psy14408        435 DIIIVGASAAGCVLANRLSEVS-SLKVLLIEAG  466 (720)
Q Consensus       435 DVVIIGSGiAGLvAA~~LAea~-G~KVLVLEKG  466 (720)
                      .|.|||.|..|+..|..|+++. |++|+++|+.
T Consensus        11 kI~VIG~G~vG~~~A~~La~~g~g~~V~~~D~~   43 (481)
T 2o3j_A           11 KVVCVGAGYVGGPTCAMIAHKCPHITVTVVDMN   43 (481)
T ss_dssp             EEEEECCSTTHHHHHHHHHHHCTTSEEEEECSC
T ss_pred             EEEEECCCHHHHHHHHHHHhcCCCCEEEEEECC
Confidence            6999999999999999999982 6899999974

>2pzm_A Putative nucleotide sugar epimerase/ dehydratase; rossman fold, protein-NAD complex, protein-nucleotide comple binding protein; HET: NAD UDP; 2.00A {Bordetella bronchiseptica} PDB: 2pzl_A* 2pzk_A*

Probab=84.57  E-value=0.8  Score=47.19  Aligned_cols=32  Identities=22%  Similarity=0.335  Sum_probs=29.4

Q ss_pred             cEEEECC-cHHHHHHHHHHHhcCCCcEEEEccCC
Q psy14408        435 DIIIVGA-SAAGCVLANRLSEVSSLKVLLIEAGG  467 (720)
Q Consensus       435 DVVIIGS-GiAGLvAA~~LAea~G~KVLVLEKG~  467 (720)
                      -|+|.|| |..|..+|.+|+++ |++|+++.|..
T Consensus        22 ~vlVTGasG~iG~~l~~~L~~~-g~~V~~~~r~~   54 (330)
T 2pzm_A           22 RILITGGAGCLGSNLIEHWLPQ-GHEILVIDNFA   54 (330)
T ss_dssp             EEEEETTTSHHHHHHHHHHGGG-TCEEEEEECCS
T ss_pred             EEEEECCCCHHHHHHHHHHHHC-CCEEEEEECCC
Confidence            5999997 99999999999999 99999999853

>3zwc_A Peroxisomal bifunctional enzyme; beta oxidation pathway, oxidoreductase, lipid metabolism, LY isomerase, peroxisome, fatty acid metabolism; HET: NAD HSC; 2.30A {Rattus norvegicus} PDB: 3zw9_A* 3zw8_A* 3zwa_A* 3zwb_A* 2x58_A*

Probab=84.56  E-value=0.67  Score=54.65  Aligned_cols=31  Identities=19%  Similarity=0.379  Sum_probs=29.6

Q ss_pred             cEEEECCcHHHHHHHHHHHhcCCCcEEEEccC
Q psy14408        435 DIIIVGASAAGCVLANRLSEVSSLKVLLIEAG  466 (720)
Q Consensus       435 DVVIIGSGiAGLvAA~~LAea~G~KVLVLEKG  466 (720)
                      -|.|||+|..|...|..+|.+ |++|+|+|..
T Consensus       318 ~v~ViGaG~MG~gIA~~~a~a-G~~V~l~D~~  348 (742)
T 3zwc_A          318 SVGVLGLGTMGRGIAISFARV-GISVVAVESD  348 (742)
T ss_dssp             EEEEECCSHHHHHHHHHHHTT-TCEEEEECSS
T ss_pred             EEEEEcccHHHHHHHHHHHhC-CCchhcccch
Confidence            699999999999999999999 9999999975

>3tnl_A Shikimate dehydrogenase; structural genomics, center for structural genomics of infec diseases, csgid; HET: NAD SKM; 1.45A {Listeria monocytogenes} PDB: 3toz_A*

Probab=84.46  E-value=0.77  Score=48.67  Aligned_cols=32  Identities=13%  Similarity=0.201  Sum_probs=29.4

Q ss_pred             ccEEEECCcHHHHHHHHHHHhcCCC-cEEEEccC
Q psy14408        434 FDIIIVGASAAGCVLANRLSEVSSL-KVLLIEAG  466 (720)
Q Consensus       434 yDVVIIGSGiAGLvAA~~LAea~G~-KVLVLEKG  466 (720)
                      -.|+|+|+|-+|.++|..|++. |. +|+|+.|.
T Consensus       155 k~~lVlGaGG~g~aia~~L~~~-Ga~~V~i~nR~  187 (315)
T 3tnl_A          155 KKMTICGAGGAATAICIQAALD-GVKEISIFNRK  187 (315)
T ss_dssp             SEEEEECCSHHHHHHHHHHHHT-TCSEEEEEECS
T ss_pred             CEEEEECCChHHHHHHHHHHHC-CCCEEEEEECC
Confidence            3799999999999999999999 98 89999886

>3dqp_A Oxidoreductase YLBE; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; 1.40A {Lactococcus lactis subsp}

Probab=84.38  E-value=0.7  Score=44.61  Aligned_cols=31  Identities=26%  Similarity=0.283  Sum_probs=28.9

Q ss_pred             EEEEC-CcHHHHHHHHHHHhcCCCcEEEEccCC
Q psy14408        436 IIIVG-ASAAGCVLANRLSEVSSLKVLLIEAGG  467 (720)
Q Consensus       436 VVIIG-SGiAGLvAA~~LAea~G~KVLVLEKG~  467 (720)
                      |+|+| +|..|..+|.+|+++ |++|+++.|..
T Consensus         3 ilItGatG~iG~~l~~~L~~~-g~~V~~~~R~~   34 (219)
T 3dqp_A            3 IFIVGSTGRVGKSLLKSLSTT-DYQIYAGARKV   34 (219)
T ss_dssp             EEEESTTSHHHHHHHHHHTTS-SCEEEEEESSG
T ss_pred             EEEECCCCHHHHHHHHHHHHC-CCEEEEEECCc
Confidence            89999 799999999999999 99999999873

>1leh_A Leucine dehydrogenase; oxidoreductase; 2.20A {Lysinibacillus sphaericus} SCOP: c.2.1.7 c.58.1.1

Probab=84.38  E-value=0.75  Score=49.72  Aligned_cols=32  Identities=13%  Similarity=0.307  Sum_probs=29.7

Q ss_pred             ccEEEECCcHHHHHHHHHHHhcCCCcEEEEccC
Q psy14408        434 FDIIIVGASAAGCVLANRLSEVSSLKVLLIEAG  466 (720)
Q Consensus       434 yDVVIIGSGiAGLvAA~~LAea~G~KVLVLEKG  466 (720)
                      --|+|||+|-.|..+|..|.+. |.+|+|.|+.
T Consensus       174 ktV~V~G~G~VG~~~A~~L~~~-GakVvv~D~~  205 (364)
T 1leh_A          174 LAVSVQGLGNVAKALCKKLNTE-GAKLVVTDVN  205 (364)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHT-TCEEEEECSC
T ss_pred             CEEEEECchHHHHHHHHHHHHC-CCEEEEEcCC
Confidence            4699999999999999999999 9999999964

>3don_A Shikimate dehydrogenase; alpha-beta structure, rossman fold, amino-acid biosynthesis, amino acid biosynthesis, NADP, oxidoreductase; 2.10A {Staphylococcus epidermidis} PDB: 3doo_A*

Probab=84.29  E-value=0.67  Score=48.18  Aligned_cols=33  Identities=24%  Similarity=0.244  Sum_probs=30.1

Q ss_pred             ccEEEECCcHHHHHHHHHHHhcCCC-cEEEEccCC
Q psy14408        434 FDIIIVGASAAGCVLANRLSEVSSL-KVLLIEAGG  467 (720)
Q Consensus       434 yDVVIIGSGiAGLvAA~~LAea~G~-KVLVLEKG~  467 (720)
                      -.|+|||+|-+|.++|..|++. |. +|+|+.|..
T Consensus       118 k~vlvlGaGg~g~aia~~L~~~-G~~~v~v~~R~~  151 (277)
T 3don_A          118 AYILILGAGGASKGIANELYKI-VRPTLTVANRTM  151 (277)
T ss_dssp             CCEEEECCSHHHHHHHHHHHTT-CCSCCEEECSCG
T ss_pred             CEEEEECCcHHHHHHHHHHHHC-CCCEEEEEeCCH
Confidence            3799999999999999999999 98 899999863

>2d5c_A AROE, shikimate 5-dehydrogenase; substrate, dimer, structural genomics, NPPSFA, Na project on protein structural and functional analyses; HET: SKM; 1.65A {Thermus thermophilus} PDB: 1wxd_A* 2cy0_A* 2ev9_A*

Probab=84.26  E-value=0.88  Score=46.07  Aligned_cols=31  Identities=29%  Similarity=0.415  Sum_probs=29.4

Q ss_pred             cEEEECCcHHHHHHHHHHHhcCCCcEEEEccC
Q psy14408        435 DIIIVGASAAGCVLANRLSEVSSLKVLLIEAG  466 (720)
Q Consensus       435 DVVIIGSGiAGLvAA~~LAea~G~KVLVLEKG  466 (720)
                      .|+|||+|-+|..+|..|++. |.+|+|++|.
T Consensus       118 ~v~iiG~G~~g~~~a~~l~~~-g~~v~v~~r~  148 (263)
T 2d5c_A          118 PALVLGAGGAGRAVAFALREA-GLEVWVWNRT  148 (263)
T ss_dssp             CEEEECCSHHHHHHHHHHHHT-TCCEEEECSS
T ss_pred             eEEEECCcHHHHHHHHHHHHC-CCEEEEEECC
Confidence            799999999999999999998 9999999986

>1y8q_A Ubiquitin-like 1 activating enzyme E1A; SUMO, heterodimer, UBL, ligase; HET: ATP; 2.25A {Homo sapiens} PDB: 1y8r_A* 3kyc_A* 3kyd_A*

Probab=84.24  E-value=0.72  Score=49.32  Aligned_cols=35  Identities=14%  Similarity=0.309  Sum_probs=30.8

Q ss_pred             CcccEEEECCcHHHHHHHHHHHhcCCC-cEEEEccCC
Q psy14408        432 DCFDIIIVGASAAGCVLANRLSEVSSL-KVLLIEAGG  467 (720)
Q Consensus       432 ~eyDVVIIGSGiAGLvAA~~LAea~G~-KVLVLEKG~  467 (720)
                      ....|+|||+|..|+.+|..|++. |. +++|+|...
T Consensus        35 ~~~~VlivG~GGlG~~ia~~La~~-Gvg~itlvD~d~   70 (346)
T 1y8q_A           35 RASRVLLVGLKGLGAEIAKNLILA-GVKGLTMLDHEQ   70 (346)
T ss_dssp             HTCEEEEECCSHHHHHHHHHHHHH-TCSEEEEECCCB
T ss_pred             hCCeEEEECCCHHHHHHHHHHHHc-CCCEEEEEECCC
Confidence            456999999999999999999999 97 789998643

>3pid_A UDP-glucose 6-dehydrogenase; rossmann fold, oxidoreductase; 1.40A {Klebsiella pneumoniae} PDB: 3pln_A* 3pjg_A* 3phl_A* 3plr_A*

Probab=84.22  E-value=0.73  Score=50.96  Aligned_cols=31  Identities=16%  Similarity=0.215  Sum_probs=28.3

Q ss_pred             cEEEECCcHHHHHHHHHHHhcCCCcEEEEccCC
Q psy14408        435 DIIIVGASAAGCVLANRLSEVSSLKVLLIEAGG  467 (720)
Q Consensus       435 DVVIIGSGiAGLvAA~~LAea~G~KVLVLEKG~  467 (720)
                      .|.|||.|..|+..|..||+  |++|+++|+..
T Consensus        38 kIaVIGlG~mG~~lA~~La~--G~~V~~~D~~~   68 (432)
T 3pid_A           38 KITISGTGYVGLSNGVLIAQ--NHEVVALDIVQ   68 (432)
T ss_dssp             EEEEECCSHHHHHHHHHHHT--TSEEEEECSCH
T ss_pred             EEEEECcCHHHHHHHHHHHc--CCeEEEEecCH
Confidence            79999999999999999995  89999999753

>3d4o_A Dipicolinate synthase subunit A; NP_243269.1, structural GEN joint center for structural genomics, JCSG, protein structu initiative, PSI-2; HET: MSE TAR; 2.10A {Bacillus halodurans}

Probab=84.09  E-value=0.83  Score=47.20  Aligned_cols=32  Identities=16%  Similarity=0.301  Sum_probs=29.8

Q ss_pred             ccEEEECCcHHHHHHHHHHHhcCCCcEEEEccC
Q psy14408        434 FDIIIVGASAAGCVLANRLSEVSSLKVLLIEAG  466 (720)
Q Consensus       434 yDVVIIGSGiAGLvAA~~LAea~G~KVLVLEKG  466 (720)
                      -.|.|||.|..|..+|..|... |.+|+++++.
T Consensus       156 ~~v~IiG~G~iG~~~a~~l~~~-G~~V~~~dr~  187 (293)
T 3d4o_A          156 ANVAVLGLGRVGMSVARKFAAL-GAKVKVGARE  187 (293)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHT-TCEEEEEESS
T ss_pred             CEEEEEeeCHHHHHHHHHHHhC-CCEEEEEECC
Confidence            4799999999999999999988 9999999986

>3u62_A Shikimate dehydrogenase; shikimate pathway, oxidoreductase; 1.45A {Thermotoga maritima}

Probab=84.03  E-value=0.84  Score=46.68  Aligned_cols=31  Identities=16%  Similarity=0.389  Sum_probs=29.3

Q ss_pred             cEEEECCcHHHHHHHHHHHhcCCC-cEEEEccC
Q psy14408        435 DIIIVGASAAGCVLANRLSEVSSL-KVLLIEAG  466 (720)
Q Consensus       435 DVVIIGSGiAGLvAA~~LAea~G~-KVLVLEKG  466 (720)
                      .|+|||+|-+|-++|..|++. |. +|+|++|.
T Consensus       110 ~vliiGaGg~a~ai~~~L~~~-G~~~I~v~nR~  141 (253)
T 3u62_A          110 PVVVVGAGGAARAVIYALLQM-GVKDIWVVNRT  141 (253)
T ss_dssp             SEEEECCSHHHHHHHHHHHHT-TCCCEEEEESC
T ss_pred             eEEEECcHHHHHHHHHHHHHc-CCCEEEEEeCC
Confidence            799999999999999999999 98 89999986

>1cyd_A Carbonyl reductase; short-chain dehydrogenase, oxidoreductase; HET: NAP; 1.80A {Mus musculus} SCOP: c.2.1.2

Probab=84.02  E-value=0.89  Score=44.46  Aligned_cols=31  Identities=19%  Similarity=0.266  Sum_probs=28.2

Q ss_pred             cEEEECC-cHHHHHHHHHHHhcCCCcEEEEccC
Q psy14408        435 DIIIVGA-SAAGCVLANRLSEVSSLKVLLIEAG  466 (720)
Q Consensus       435 DVVIIGS-GiAGLvAA~~LAea~G~KVLVLEKG  466 (720)
                      -|+|.|| |..|..+|.+|+++ |++|++++|.
T Consensus         9 ~vlVTGasggiG~~~a~~l~~~-G~~V~~~~r~   40 (244)
T 1cyd_A            9 RALVTGAGKGIGRDTVKALHAS-GAKVVAVTRT   40 (244)
T ss_dssp             EEEEESTTSHHHHHHHHHHHHT-TCEEEEEESC
T ss_pred             EEEEeCCCchHHHHHHHHHHHC-CCEEEEEeCC
Confidence            4888887 89999999999999 9999999885

>3h5n_A MCCB protein; ubiquitin-activating enzyme, microcin, protein structure, MCCC7, peptide antibiotics, N-P bond formation, transferase; HET: ATP; 1.90A {Escherichia coli} PDB: 3h5r_A 3h9g_A 3h9j_A* 3h9q_A 3h5a_A

Probab=84.02  E-value=0.77  Score=49.23  Aligned_cols=35  Identities=17%  Similarity=0.392  Sum_probs=30.8

Q ss_pred             CcccEEEECCcHHHHHHHHHHHhcCCC-cEEEEccCC
Q psy14408        432 DCFDIIIVGASAAGCVLANRLSEVSSL-KVLLIEAGG  467 (720)
Q Consensus       432 ~eyDVVIIGSGiAGLvAA~~LAea~G~-KVLVLEKG~  467 (720)
                      ....|+|||+|-.|..+|..||++ |. +++|+|...
T Consensus       117 ~~~~VlvvG~GglGs~va~~La~a-Gvg~i~lvD~D~  152 (353)
T 3h5n_A          117 KNAKVVILGCGGIGNHVSVILATS-GIGEIILIDNDQ  152 (353)
T ss_dssp             HTCEEEEECCSHHHHHHHHHHHHH-TCSEEEEEECCB
T ss_pred             hCCeEEEECCCHHHHHHHHHHHhC-CCCeEEEECCCc
Confidence            356899999999999999999999 86 688999763

>4gwg_A 6-phosphogluconate dehydrogenase, decarboxylating; 6-phosphoglyconate dehydrogenase, NADP, oxido; HET: MES; 1.39A {Homo sapiens} PDB: 4gwk_A* 2jkv_A* 2pgd_A 1pgo_A* 1pgp_A* 1pgq_A* 1pgn_A

Probab=83.98  E-value=0.95  Score=50.73  Aligned_cols=33  Identities=18%  Similarity=0.230  Sum_probs=30.8

Q ss_pred             ccEEEECCcHHHHHHHHHHHhcCCCcEEEEccCC
Q psy14408        434 FDIIIVGASAAGCVLANRLSEVSSLKVLLIEAGG  467 (720)
Q Consensus       434 yDVVIIGSGiAGLvAA~~LAea~G~KVLVLEKG~  467 (720)
                      -+|.|||.|..|...|..|+++ |++|++.++..
T Consensus         5 ~kIgiIGlG~MG~~lA~~L~~~-G~~V~v~dr~~   37 (484)
T 4gwg_A            5 ADIALIGLAVMGQNLILNMNDH-GFVVCAFNRTV   37 (484)
T ss_dssp             BSEEEECCSHHHHHHHHHHHHT-TCCEEEECSST
T ss_pred             CEEEEEChhHHHHHHHHHHHHC-CCEEEEEeCCH
Confidence            3799999999999999999999 99999999864

>3ktd_A Prephenate dehydrogenase; structural genomics, joint center F structural genomics, JCSG, protein structure initiative; 2.60A {Corynebacterium glutamicum atcc 13032}

Probab=83.96  E-value=0.86  Score=48.72  Aligned_cols=32  Identities=19%  Similarity=0.213  Sum_probs=29.9

Q ss_pred             cEEEECCcHHHHHHHHHHHhcCCCcEEEEccCC
Q psy14408        435 DIIIVGASAAGCVLANRLSEVSSLKVLLIEAGG  467 (720)
Q Consensus       435 DVVIIGSGiAGLvAA~~LAea~G~KVLVLEKG~  467 (720)
                      .|.|||.|..|.+.|..|+++ |++|++.|+..
T Consensus        10 kIgIIG~G~mG~slA~~L~~~-G~~V~~~dr~~   41 (341)
T 3ktd_A           10 PVCILGLGLIGGSLLRDLHAA-NHSVFGYNRSR   41 (341)
T ss_dssp             CEEEECCSHHHHHHHHHHHHT-TCCEEEECSCH
T ss_pred             EEEEEeecHHHHHHHHHHHHC-CCEEEEEeCCH
Confidence            699999999999999999999 99999999863

>2rir_A Dipicolinate synthase, A chain; structural genomics, APC1343, PSI-2, structure initiative; HET: MSE NAP; 2.79A {Bacillus subtilis}

Probab=83.91  E-value=0.85  Score=47.22  Aligned_cols=32  Identities=13%  Similarity=0.266  Sum_probs=29.8

Q ss_pred             ccEEEECCcHHHHHHHHHHHhcCCCcEEEEccC
Q psy14408        434 FDIIIVGASAAGCVLANRLSEVSSLKVLLIEAG  466 (720)
Q Consensus       434 yDVVIIGSGiAGLvAA~~LAea~G~KVLVLEKG  466 (720)
                      -.|.|||+|-.|..+|..|... |.+|+++++.
T Consensus       158 ~~v~IiG~G~iG~~~a~~l~~~-G~~V~~~d~~  189 (300)
T 2rir_A          158 SQVAVLGLGRTGMTIARTFAAL-GANVKVGARS  189 (300)
T ss_dssp             SEEEEECCSHHHHHHHHHHHHT-TCEEEEEESS
T ss_pred             CEEEEEcccHHHHHHHHHHHHC-CCEEEEEECC
Confidence            3699999999999999999988 9999999986

>2z1m_A GDP-D-mannose dehydratase; short-chain dehydrogenase/reductase, lyase, structural genom NPPSFA; HET: NDP GDP; 2.00A {Aquifex aeolicus} PDB: 2z95_A*

Probab=83.87  E-value=0.92  Score=46.33  Aligned_cols=32  Identities=25%  Similarity=0.288  Sum_probs=29.5

Q ss_pred             cEEEECC-cHHHHHHHHHHHhcCCCcEEEEccCC
Q psy14408        435 DIIIVGA-SAAGCVLANRLSEVSSLKVLLIEAGG  467 (720)
Q Consensus       435 DVVIIGS-GiAGLvAA~~LAea~G~KVLVLEKG~  467 (720)
                      -|+|.|| |..|..+|.+|+++ |++|+++.|..
T Consensus         5 ~vlVtGatG~iG~~l~~~L~~~-G~~V~~~~r~~   37 (345)
T 2z1m_A            5 RALITGIRGQDGAYLAKLLLEK-GYEVYGADRRS   37 (345)
T ss_dssp             EEEEETTTSHHHHHHHHHHHHT-TCEEEEECSCC
T ss_pred             EEEEECCCChHHHHHHHHHHHC-CCEEEEEECCC
Confidence            4899998 99999999999999 99999999864

>2qyt_A 2-dehydropantoate 2-reductase; APC81190, porphyromonas gingi W83, structural genomics, PSI-2; HET: MSE; 2.15A {Porphyromonas gingivalis}

Probab=83.86  E-value=0.58  Score=47.90  Aligned_cols=32  Identities=25%  Similarity=0.344  Sum_probs=28.6

Q ss_pred             cEEEECCcHHHHHHHHHHHhcC----C-CcEEEEccC
Q psy14408        435 DIIIVGASAAGCVLANRLSEVS----S-LKVLLIEAG  466 (720)
Q Consensus       435 DVVIIGSGiAGLvAA~~LAea~----G-~KVLVLEKG  466 (720)
                      .|.|||+|..|...|..|+++.    | ++|++++|.
T Consensus        10 ~I~iiG~G~mG~~~a~~L~~~~~~~~g~~~V~~~~r~   46 (317)
T 2qyt_A           10 KIAVFGLGGVGGYYGAMLALRAAATDGLLEVSWIARG   46 (317)
T ss_dssp             EEEEECCSHHHHHHHHHHHHHHHHTTSSEEEEEECCH
T ss_pred             EEEEECcCHHHHHHHHHHHhCccccCCCCCEEEEEcH
Confidence            6999999999999999999862    6 899999983

>3d3w_A L-xylulose reductase; uronate cycle, short-chain dehydrogenase/reductase(SDR) superfamily, glucose metabolism, acetylation, carbohydrate metabolism; HET: NAP; 1.87A {Homo sapiens} PDB: 1wnt_A* 1pr9_A*

Probab=83.86  E-value=0.91  Score=44.47  Aligned_cols=31  Identities=16%  Similarity=0.311  Sum_probs=28.1

Q ss_pred             cEEEECC-cHHHHHHHHHHHhcCCCcEEEEccC
Q psy14408        435 DIIIVGA-SAAGCVLANRLSEVSSLKVLLIEAG  466 (720)
Q Consensus       435 DVVIIGS-GiAGLvAA~~LAea~G~KVLVLEKG  466 (720)
                      -|+|.|| |..|..+|.+|+++ |++|+++.|.
T Consensus         9 ~vlITGasggiG~~~a~~l~~~-G~~V~~~~r~   40 (244)
T 3d3w_A            9 RVLVTGAGKGIGRGTVQALHAT-GARVVAVSRT   40 (244)
T ss_dssp             EEEEESTTSHHHHHHHHHHHHT-TCEEEEEESC
T ss_pred             EEEEECCCcHHHHHHHHHHHHC-CCEEEEEeCC
Confidence            4888887 89999999999999 9999999885

>4id9_A Short-chain dehydrogenase/reductase; putative dehydrogenase, enzyme function initiative, EFI, STR genomics, oxidoreductase; HET: NAD; 1.60A {Agrobacterium fabrum} PDB: 4idg_A*

Probab=83.77  E-value=0.96  Score=46.61  Aligned_cols=35  Identities=14%  Similarity=0.171  Sum_probs=30.5

Q ss_pred             cccEEEECC-cHHHHHHHHHHHhcCCCcEEEEccCCC
Q psy14408        433 CFDIIIVGA-SAAGCVLANRLSEVSSLKVLLIEAGGD  468 (720)
Q Consensus       433 eyDVVIIGS-GiAGLvAA~~LAea~G~KVLVLEKG~~  468 (720)
                      .--|+|.|| |..|..+|..|+++ |++|+++.|...
T Consensus        19 ~~~vlVtGatG~iG~~l~~~L~~~-G~~V~~~~r~~~   54 (347)
T 4id9_A           19 SHMILVTGSAGRVGRAVVAALRTQ-GRTVRGFDLRPS   54 (347)
T ss_dssp             --CEEEETTTSHHHHHHHHHHHHT-TCCEEEEESSCC
T ss_pred             CCEEEEECCCChHHHHHHHHHHhC-CCEEEEEeCCCC
Confidence            346999998 99999999999999 999999998743

>3gt0_A Pyrroline-5-carboxylate reductase; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG; 2.00A {Bacillus cereus atcc 14579}

Probab=83.77  E-value=0.94  Score=45.25  Aligned_cols=31  Identities=10%  Similarity=0.304  Sum_probs=29.3

Q ss_pred             cEEEECCcHHHHHHHHHHHhcCCC----cEEEEccC
Q psy14408        435 DIIIVGASAAGCVLANRLSEVSSL----KVLLIEAG  466 (720)
Q Consensus       435 DVVIIGSGiAGLvAA~~LAea~G~----KVLVLEKG  466 (720)
                      .|.|||+|..|...|..|+++ |+    +|++.+|.
T Consensus         4 ~i~iIG~G~mG~~~a~~l~~~-g~~~~~~V~~~~r~   38 (247)
T 3gt0_A            4 QIGFIGCGNMGMAMIGGMINK-NIVSSNQIICSDLN   38 (247)
T ss_dssp             CEEEECCSHHHHHHHHHHHHT-TSSCGGGEEEECSC
T ss_pred             eEEEECccHHHHHHHHHHHhC-CCCCCCeEEEEeCC
Confidence            589999999999999999999 98    99999986

>3pwz_A Shikimate dehydrogenase 3; alpha-beta, oxidoreductase; 1.71A {Pseudomonas putida}

Probab=83.63  E-value=0.89  Score=47.04  Aligned_cols=32  Identities=9%  Similarity=0.119  Sum_probs=29.2

Q ss_pred             ccEEEECCcHHHHHHHHHHHhcCCC-cEEEEccC
Q psy14408        434 FDIIIVGASAAGCVLANRLSEVSSL-KVLLIEAG  466 (720)
Q Consensus       434 yDVVIIGSGiAGLvAA~~LAea~G~-KVLVLEKG  466 (720)
                      -.|+|||+|-+|.++|..|++. |. +|+|+.|.
T Consensus       121 k~~lvlGaGg~~~aia~~L~~~-G~~~v~i~~R~  153 (272)
T 3pwz_A          121 RRVLLLGAGGAVRGALLPFLQA-GPSELVIANRD  153 (272)
T ss_dssp             SEEEEECCSHHHHHHHHHHHHT-CCSEEEEECSC
T ss_pred             CEEEEECccHHHHHHHHHHHHc-CCCEEEEEeCC
Confidence            3799999999999999999999 95 89999885

>1w4x_A Phenylacetone monooxygenase; baeyer-villiger, FAD; HET: FAD; 1.7A {Thermobifida fusca} SCOP: c.3.1.5 c.3.1.5 PDB: 2ylr_A* 2yls_A* 2ylt_A* 2ym1_A* 2ylw_A* 2ym2_A* 2ylx_A* 2ylz_A*

Probab=83.57  E-value=0.82  Score=51.19  Aligned_cols=35  Identities=6%  Similarity=0.260  Sum_probs=31.8

Q ss_pred             ccEEEECCcHHHHHHHHHHHhcCCCcEEEEccCCCC
Q psy14408        434 FDIIIVGASAAGCVLANRLSEVSSLKVLLIEAGGDT  469 (720)
Q Consensus       434 yDVVIIGSGiAGLvAA~~LAea~G~KVLVLEKG~~~  469 (720)
                      -.|+|||+|..|+-+|..|++. |.+|+|++|....
T Consensus       187 k~V~VIG~G~sg~e~a~~l~~~-~~~vtv~~r~~~~  221 (542)
T 1w4x_A          187 QRVGVIGTGSSGIQVSPQIAKQ-AAELFVFQRTPHF  221 (542)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHH-BSEEEEEESSCCC
T ss_pred             CEEEEECCCccHHHHHHHHhhc-CceEEEEEcCCcc
Confidence            3799999999999999999999 9999999997543

>2izz_A Pyrroline-5-carboxylate reductase 1; amino-acid biosynthesis, NADP, oxidoreductase, proline biosy; HET: NAD; 1.95A {Homo sapiens} PDB: 2ger_A 2gr9_A* 2gra_A*

Probab=83.51  E-value=0.92  Score=47.43  Aligned_cols=33  Identities=15%  Similarity=0.245  Sum_probs=30.4

Q ss_pred             ccEEEECCcHHHHHHHHHHHhcCC----CcEEEEccCC
Q psy14408        434 FDIIIVGASAAGCVLANRLSEVSS----LKVLLIEAGG  467 (720)
Q Consensus       434 yDVVIIGSGiAGLvAA~~LAea~G----~KVLVLEKG~  467 (720)
                      -.|.|||+|..|...|..|+++ |    ++|+|++|..
T Consensus        23 mkI~iIG~G~mG~ala~~L~~~-G~~~~~~V~v~~r~~   59 (322)
T 2izz_A           23 MSVGFIGAGQLAFALAKGFTAA-GVLAAHKIMASSPDM   59 (322)
T ss_dssp             CCEEEESCSHHHHHHHHHHHHT-TSSCGGGEEEECSCT
T ss_pred             CEEEEECCCHHHHHHHHHHHHC-CCCCcceEEEECCCc
Confidence            3699999999999999999999 9    8999999875

>3ko8_A NAD-dependent epimerase/dehydratase; isomerase, UDP-galactose 4-epimerase; HET: NAD; 1.80A {Pyrobaculum calidifontis} SCOP: c.2.1.0 PDB: 3icp_A* 3aw9_A*

Probab=83.39  E-value=0.99  Score=45.69  Aligned_cols=31  Identities=23%  Similarity=0.504  Sum_probs=29.0

Q ss_pred             EEEECC-cHHHHHHHHHHHhcCCCcEEEEccCC
Q psy14408        436 IIIVGA-SAAGCVLANRLSEVSSLKVLLIEAGG  467 (720)
Q Consensus       436 VVIIGS-GiAGLvAA~~LAea~G~KVLVLEKG~  467 (720)
                      |+|.|| |..|..+|.+|+++ |++|++++|..
T Consensus         3 vlVtGatG~iG~~l~~~L~~~-g~~V~~~~r~~   34 (312)
T 3ko8_A            3 IVVTGGAGFIGSHLVDKLVEL-GYEVVVVDNLS   34 (312)
T ss_dssp             EEEETTTSHHHHHHHHHHHHT-TCEEEEECCCS
T ss_pred             EEEECCCChHHHHHHHHHHhC-CCEEEEEeCCC
Confidence            899998 99999999999999 99999999864

>1edz_A 5,10-methylenetetrahydrofolate dehydrogenase; nucleotide-binding domain, monofunctional, oxidoreductase; 2.80A {Saccharomyces cerevisiae} SCOP: c.2.1.7 c.58.1.2 PDB: 1ee9_A*

Probab=83.35  E-value=0.74  Score=49.06  Aligned_cols=33  Identities=21%  Similarity=0.225  Sum_probs=29.6

Q ss_pred             cccEEEECCc-HHHHHHHHHHHhcCCCcEEEEccC
Q psy14408        433 CFDIIIVGAS-AAGCVLANRLSEVSSLKVLLIEAG  466 (720)
Q Consensus       433 eyDVVIIGSG-iAGLvAA~~LAea~G~KVLVLEKG  466 (720)
                      .-.|+|||+| +.|-.+|..|++. |.+|+|++|.
T Consensus       177 gk~vvVIG~G~iVG~~~A~~L~~~-gAtVtv~nR~  210 (320)
T 1edz_A          177 GKKCIVINRSEIVGRPLAALLAND-GATVYSVDVN  210 (320)
T ss_dssp             TCEEEEECCCTTTHHHHHHHHHTT-SCEEEEECSS
T ss_pred             CCEEEEECCCcchHHHHHHHHHHC-CCEEEEEeCc
Confidence            3489999999 6799999999999 9999999875

>2ydy_A Methionine adenosyltransferase 2 subunit beta; oxidoreductase; 2.25A {Homo sapiens} PDB: 2ydx_A

Probab=83.26  E-value=0.88  Score=46.21  Aligned_cols=31  Identities=10%  Similarity=0.187  Sum_probs=27.5

Q ss_pred             cEEEECC-cHHHHHHHHHHHhcCCCcEEEEccC
Q psy14408        435 DIIIVGA-SAAGCVLANRLSEVSSLKVLLIEAG  466 (720)
Q Consensus       435 DVVIIGS-GiAGLvAA~~LAea~G~KVLVLEKG  466 (720)
                      -|+|+|| |..|..+|.+|+++ |++|+++.|.
T Consensus         4 ~vlVtGatG~iG~~l~~~L~~~-g~~V~~~~r~   35 (315)
T 2ydy_A            4 RVLVTGATGLLGRAVHKEFQQN-NWHAVGCGFR   35 (315)
T ss_dssp             EEEEETTTSHHHHHHHHHHHTT-TCEEEEEC--
T ss_pred             eEEEECCCcHHHHHHHHHHHhC-CCeEEEEccC
Confidence            4899998 99999999999999 9999999975

>3vh1_A Ubiquitin-like modifier-activating enzyme ATG7; autophagy, zinc binding, metal binding protein; 3.00A {Saccharomyces cerevisiae} PDB: 3vh2_A

Probab=83.24  E-value=0.85  Score=52.46  Aligned_cols=35  Identities=20%  Similarity=0.531  Sum_probs=30.9

Q ss_pred             CcccEEEECCcHHHHHHHHHHHhcCCC-cEEEEccCC
Q psy14408        432 DCFDIIIVGASAAGCVLANRLSEVSSL-KVLLIEAGG  467 (720)
Q Consensus       432 ~eyDVVIIGSGiAGLvAA~~LAea~G~-KVLVLEKG~  467 (720)
                      ....|+|||+|-.|+.+|..||+. |. +++|+|...
T Consensus       326 ~~~kVLIVGaGGLGs~va~~La~a-GVG~ItLvD~D~  361 (598)
T 3vh1_A          326 KNTKVLLLGAGTLGCYVSRALIAW-GVRKITFVDNGT  361 (598)
T ss_dssp             HTCEEEEECCSHHHHHHHHHHHTT-TCCEEEEECCSB
T ss_pred             hCCeEEEECCCHHHHHHHHHHHHc-CCCEEEEECCCc
Confidence            346899999999999999999999 87 689999764

>2i6t_A Ubiquitin-conjugating enzyme E2-like isoform A; L-lactate dehydrogenase, oxidoreductase, ubiquitin-protein L unknown function; 2.10A {Homo sapiens} PDB: 3dl2_A

Probab=83.22  E-value=0.91  Score=47.66  Aligned_cols=33  Identities=18%  Similarity=0.359  Sum_probs=29.8

Q ss_pred             ccEEEECCcHHHHHHHHHHHhcCCC--cEEEEccCC
Q psy14408        434 FDIIIVGASAAGCVLANRLSEVSSL--KVLLIEAGG  467 (720)
Q Consensus       434 yDVVIIGSGiAGLvAA~~LAea~G~--KVLVLEKG~  467 (720)
                      .-|.|||+|..|..+|..|+.+ |+  .|+|+|...
T Consensus        15 ~kV~ViGaG~vG~~~a~~l~~~-g~~~ev~L~Di~~   49 (303)
T 2i6t_A           15 NKITVVGGGELGIACTLAISAK-GIADRLVLLDLSE   49 (303)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHH-TCCSEEEEECCC-
T ss_pred             CEEEEECCCHHHHHHHHHHHhc-CCCCEEEEEcCCc
Confidence            3699999999999999999999 88  999999875

>1np3_A Ketol-acid reductoisomerase; A DEEP figure-OF-eight knot, C-terminal alpha-helical domain oxidoreductase; 2.00A {Pseudomonas aeruginosa} SCOP: a.100.1.2 c.2.1.6

Probab=83.07  E-value=1  Score=47.66  Aligned_cols=32  Identities=22%  Similarity=0.330  Sum_probs=29.8

Q ss_pred             cEEEECCcHHHHHHHHHHHhcCCCcEEEEccCC
Q psy14408        435 DIIIVGASAAGCVLANRLSEVSSLKVLLIEAGG  467 (720)
Q Consensus       435 DVVIIGSGiAGLvAA~~LAea~G~KVLVLEKG~  467 (720)
                      .|.|||.|..|.+.|..|++. |++|++.++..
T Consensus        18 ~I~IIG~G~mG~alA~~L~~~-G~~V~~~~~~~   49 (338)
T 1np3_A           18 KVAIIGYGSQGHAHACNLKDS-GVDVTVGLRSG   49 (338)
T ss_dssp             CEEEECCSHHHHHHHHHHHHT-TCCEEEECCTT
T ss_pred             EEEEECchHHHHHHHHHHHHC-cCEEEEEECCh
Confidence            699999999999999999999 99999999864

>4gx0_A TRKA domain protein; membrane protein, ION channel, ADP binding, NAD binding, MEM transport protein; HET: MAL GLC; 2.60A {Geobacter sulfurreducens} PDB: 4gx1_A* 4gx2_A* 4gx5_A 4gvl_A*

Probab=83.00  E-value=0.99  Score=50.74  Aligned_cols=35  Identities=26%  Similarity=0.396  Sum_probs=32.1

Q ss_pred             ccEEEECCcHHHHHHHHHHHhcCCCcEEEEccCCCC
Q psy14408        434 FDIIIVGASAAGCVLANRLSEVSSLKVLLIEAGGDT  469 (720)
Q Consensus       434 yDVVIIGSGiAGLvAA~~LAea~G~KVLVLEKG~~~  469 (720)
                      -.|||||+|-.|..+|..|.+. |+.|+|+|+....
T Consensus       349 ~~viIiG~G~~G~~la~~L~~~-g~~v~vid~d~~~  383 (565)
T 4gx0_A          349 ELIFIIGHGRIGCAAAAFLDRK-PVPFILIDRQESP  383 (565)
T ss_dssp             CCEEEECCSHHHHHHHHHHHHT-TCCEEEEESSCCS
T ss_pred             CCEEEECCCHHHHHHHHHHHHC-CCCEEEEECChHH
Confidence            3799999999999999999999 9999999998543

>2pd4_A Enoyl-[acyl-carrier-protein] reductase [NADH]; antibacterial target, type II fatty acid biosynthesis, enoyl-ACP-reductase, FABI; HET: NAD DCN; 2.30A {Helicobacter pylori} SCOP: c.2.1.2 PDB: 2pd3_A*

Probab=82.99  E-value=0.86  Score=46.00  Aligned_cols=32  Identities=13%  Similarity=0.084  Sum_probs=28.8

Q ss_pred             cEEEECC---cHHHHHHHHHHHhcCCCcEEEEccCC
Q psy14408        435 DIIIVGA---SAAGCVLANRLSEVSSLKVLLIEAGG  467 (720)
Q Consensus       435 DVVIIGS---GiAGLvAA~~LAea~G~KVLVLEKG~  467 (720)
                      -|||.||   |-.|..+|.+|+++ |++|++++|..
T Consensus         8 ~vlVTGas~~~gIG~~~a~~l~~~-G~~V~~~~r~~   42 (275)
T 2pd4_A            8 KGLIVGVANNKSIAYGIAQSCFNQ-GATLAFTYLNE   42 (275)
T ss_dssp             EEEEECCCSTTSHHHHHHHHHHTT-TCEEEEEESST
T ss_pred             EEEEECCCCCCcHHHHHHHHHHHC-CCEEEEEeCCH
Confidence            4899997   68999999999999 99999999874

>3o8q_A Shikimate 5-dehydrogenase I alpha; structural genomics, center for structural genomics of infec diseases, csgid; HET: EPE; 1.45A {Vibrio cholerae biovar el tor} PDB: 3sef_A* 3pgj_A* 3o8q_B*

Probab=82.78  E-value=0.94  Score=47.07  Aligned_cols=32  Identities=16%  Similarity=0.226  Sum_probs=29.2

Q ss_pred             ccEEEECCcHHHHHHHHHHHhcCCC-cEEEEccC
Q psy14408        434 FDIIIVGASAAGCVLANRLSEVSSL-KVLLIEAG  466 (720)
Q Consensus       434 yDVVIIGSGiAGLvAA~~LAea~G~-KVLVLEKG  466 (720)
                      -.|+|||+|-+|.++|..|++. |. +|+|+.|.
T Consensus       127 k~vlvlGaGg~g~aia~~L~~~-G~~~v~v~~R~  159 (281)
T 3o8q_A          127 ATILLIGAGGAARGVLKPLLDQ-QPASITVTNRT  159 (281)
T ss_dssp             CEEEEECCSHHHHHHHHHHHTT-CCSEEEEEESS
T ss_pred             CEEEEECchHHHHHHHHHHHhc-CCCeEEEEECC
Confidence            3799999999999999999999 96 89999886

>3oig_A Enoyl-[acyl-carrier-protein] reductase [NADH]; fatty acid synthesis, rossmann-like fold, enoyl-ACP reductas binding; HET: NAD IMJ; 1.25A {Bacillus subtilis} SCOP: c.2.1.2 PDB: 3oif_A* 2qio_A* 3oje_A 3ojf_A*

Probab=82.70  E-value=0.99  Score=45.09  Aligned_cols=31  Identities=23%  Similarity=0.470  Sum_probs=27.2

Q ss_pred             cEEEECC-cH--HHHHHHHHHHhcCCCcEEEEccC
Q psy14408        435 DIIIVGA-SA--AGCVLANRLSEVSSLKVLLIEAG  466 (720)
Q Consensus       435 DVVIIGS-Gi--AGLvAA~~LAea~G~KVLVLEKG  466 (720)
                      -|||.|| |.  .|..+|.+|+++ |.+|+++.|.
T Consensus         9 ~vlVTGasg~~GIG~~ia~~l~~~-G~~V~~~~r~   42 (266)
T 3oig_A            9 NIVVMGVANKRSIAWGIARSLHEA-GARLIFTYAG   42 (266)
T ss_dssp             EEEEECCCSTTSHHHHHHHHHHHT-TCEEEEEESS
T ss_pred             EEEEEcCCCCCcHHHHHHHHHHHC-CCEEEEecCc
Confidence            4889997 45  899999999999 9999999876

>4gsl_A Ubiquitin-like modifier-activating enzyme ATG7; ubiquitin-like protein activation enzyme, ubiquitin-like Pro transfer enzyme, protein transport; 2.70A {Saccharomyces cerevisiae} PDB: 3vh2_A 4gsk_A 3vh1_A

Probab=82.64  E-value=0.95  Score=52.19  Aligned_cols=36  Identities=19%  Similarity=0.490  Sum_probs=31.3

Q ss_pred             CcccEEEECCcHHHHHHHHHHHhcCCC-cEEEEccCCC
Q psy14408        432 DCFDIIIVGASAAGCVLANRLSEVSSL-KVLLIEAGGD  468 (720)
Q Consensus       432 ~eyDVVIIGSGiAGLvAA~~LAea~G~-KVLVLEKG~~  468 (720)
                      ...-|+|||+|-.|+.+|..||+. |. +++|+|....
T Consensus       325 ~~arVLIVGaGGLGs~vA~~La~a-GVG~ItLvD~D~V  361 (615)
T 4gsl_A          325 KNTKVLLLGAGTLGCYVSRALIAW-GVRKITFVDNGTV  361 (615)
T ss_dssp             HTCEEEEECCSHHHHHHHHHHHHT-TCCEEEEECCCBC
T ss_pred             hCCeEEEECCCHHHHHHHHHHHHc-CCCEEEEEcCCCC
Confidence            456899999999999999999999 86 6889998743

>3gvi_A Malate dehydrogenase; NAD, oxidoreductase, tricarboxylic acid cycle, structural genomics; HET: ADP; 2.25A {Brucella melitensis biovar ABORTUS2308} PDB: 3gvh_A*

Probab=82.58  E-value=1.2  Score=47.43  Aligned_cols=33  Identities=24%  Similarity=0.348  Sum_probs=30.2

Q ss_pred             ccEEEECCcHHHHHHHHHHHhcCCC-cEEEEccCC
Q psy14408        434 FDIIIVGASAAGCVLANRLSEVSSL-KVLLIEAGG  467 (720)
Q Consensus       434 yDVVIIGSGiAGLvAA~~LAea~G~-KVLVLEKG~  467 (720)
                      ..|.|||+|..|.++|..|+.. |+ .|+|+|...
T Consensus         8 ~kI~viGaG~vG~~~a~~l~~~-~~~~v~L~Di~~   41 (324)
T 3gvi_A            8 NKIALIGSGMIGGTLAHLAGLK-ELGDVVLFDIAE   41 (324)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHT-TCCEEEEECSSS
T ss_pred             CEEEEECCCHHHHHHHHHHHhC-CCCeEEEEeCCc
Confidence            3799999999999999999998 88 999999864

>3pqe_A L-LDH, L-lactate dehydrogenase; FBP, oxidoreductase; 2.20A {Bacillus subtilis} PDB: 3pqf_A* 3pqd_A*

Probab=82.56  E-value=0.96  Score=48.08  Aligned_cols=31  Identities=19%  Similarity=0.419  Sum_probs=28.8

Q ss_pred             cEEEECCcHHHHHHHHHHHhcCCC--cEEEEccC
Q psy14408        435 DIIIVGASAAGCVLANRLSEVSSL--KVLLIEAG  466 (720)
Q Consensus       435 DVVIIGSGiAGLvAA~~LAea~G~--KVLVLEKG  466 (720)
                      .|.|||+|..|.++|..|+.. |+  .|+++|..
T Consensus         7 kI~ViGaG~vG~~~a~~l~~~-~~~~~l~l~D~~   39 (326)
T 3pqe_A            7 KVALIGAGFVGSSYAFALINQ-GITDELVVIDVN   39 (326)
T ss_dssp             EEEEECCSHHHHHHHHHHHHH-TCCSEEEEECSC
T ss_pred             EEEEECCCHHHHHHHHHHHhC-CCCceEEEEecc
Confidence            699999999999999999998 87  89999974

>1lqt_A FPRA; NADP+ derivative, oxidoreductase, structural G PSI, protein structure initiative, TB structural genomics consortium, TBSGC; HET: FAD ODP; 1.05A {Mycobacterium tuberculosis} SCOP: c.3.1.1 c.4.1.1 PDB: 1lqu_A* 2c7g_A*

Probab=82.51  E-value=0.98  Score=49.67  Aligned_cols=50  Identities=10%  Similarity=0.042  Sum_probs=36.4

Q ss_pred             CCeEEEcCeEEEEEEEccCCcEEEEEEEec--------------CCcEEEEEcCcEEEEccCCcchH
Q psy14408        648 TNLYVLKRSKVTKVIINDQNVATGVEYVNS--------------KGETVRVTANKEVILTAGAIANA  700 (720)
Q Consensus       648 aGVkIi~gt~VtkIl~e~gGrAtGV~v~dt--------------~G~e~tIkAkK~VVVAAGa~~Sp  700 (720)
                      .|++|++++.|.+|..+  +++.+|++.+.              +|+..++.|+ .||+|+|....+
T Consensus       265 ~gv~i~~~~~~~~i~~~--~~v~~v~~~~~~~~~~~~~~~~~~~~g~~~~i~~d-~vi~a~G~~p~~  328 (456)
T 1lqt_A          265 RRMVFRFLTSPIEIKGK--RKVERIVLGRNELVSDGSGRVAAKDTGEREELPAQ-LVVRSVGYRGVP  328 (456)
T ss_dssp             EEEEEECSEEEEEEECS--SSCCEEEEEEEEEEECSSSSEEEEEEEEEEEEECS-EEEECSCEECCC
T ss_pred             ceEEEEeCCCCeEEecC--CcEeEEEEEEEEecCCCcccccccCCCceEEEEcC-EEEEccccccCC
Confidence            68999999999999743  56677776531              2444678997 599999965444

>1oju_A MDH, malate dehydrogenase; hyperthermophilic, oxidoreductase; HET: ENA; 2.79A {Archaeoglobus fulgidus} PDB: 1ojs_A* 2x0i_A* 2x0j_A*

Probab=82.50  E-value=0.98  Score=47.31  Aligned_cols=32  Identities=19%  Similarity=0.136  Sum_probs=29.1

Q ss_pred             cEEEECCcHHHHHHHHHHHhcCCC--cEEEEccCC
Q psy14408        435 DIIIVGASAAGCVLANRLSEVSSL--KVLLIEAGG  467 (720)
Q Consensus       435 DVVIIGSGiAGLvAA~~LAea~G~--KVLVLEKG~  467 (720)
                      .|.|||+|..|.++|..|++. |+  +|+|+|+..
T Consensus         2 kI~ViGaG~vG~~la~~l~~~-~~~~~v~L~D~~~   35 (294)
T 1oju_A            2 KLGFVGAGRVGSTSAFTCLLN-LDVDEIALVDIAE   35 (294)
T ss_dssp             EEEEECCSHHHHHHHHHHHHH-SCCSEEEEECSSH
T ss_pred             EEEEECCCHHHHHHHHHHHhC-CCCCeEEEEECCh
Confidence            489999999999999999999 88  899999863

>4ffl_A PYLC; amino acid, biosynthesis of pyrrolysine, isopeptide bond for ATP-grAsp fold, ligase, ATP-binding, L-lysine and 3R-methyl ornithine; HET: LYS ADP ATP; 1.50A {Methanosarcina barkeri} PDB: 4ffm_A* 4ffn_A* 4ffo_A* 4ffp_A* 4ffr_A*

Probab=82.46  E-value=1.1  Score=47.13  Aligned_cols=34  Identities=24%  Similarity=0.364  Sum_probs=29.7

Q ss_pred             cEEEECCcHHHHHHHHHHHhcCCCcEEEEccCCCC
Q psy14408        435 DIIIVGASAAGCVLANRLSEVSSLKVLLIEAGGDT  469 (720)
Q Consensus       435 DVVIIGSGiAGLvAA~~LAea~G~KVLVLEKG~~~  469 (720)
                      -|+|||||.-|.-+|+.+.+. |++|+++|.....
T Consensus         3 ~I~ilGgg~~g~~~~~~Ak~~-G~~vv~vd~~~~~   36 (363)
T 4ffl_A            3 TICLVGGKLQGFEAAYLSKKA-GMKVVLVDKNPQA   36 (363)
T ss_dssp             EEEEECCSHHHHHHHHHHHHT-TCEEEEEESCTTC
T ss_pred             EEEEECCCHHHHHHHHHHHHC-CCEEEEEeCCCCC
Confidence            489999999999999888888 9999999986543

>2q3e_A UDP-glucose 6-dehydrogenase; hexamer, structural genomics, S genomics consortium, SGC, oxidoreductase; HET: NAD UPG; 2.00A {Homo sapiens} PDB: 2qg4_A* 3khu_A* 3itk_A* 3tdk_A* 3ptz_A* 3prj_A* 3tf5_A

Probab=82.39  E-value=0.85  Score=50.45  Aligned_cols=32  Identities=16%  Similarity=0.371  Sum_probs=28.9

Q ss_pred             cEEEECCcHHHHHHHHHHHhcC-CCcEEEEccC
Q psy14408        435 DIIIVGASAAGCVLANRLSEVS-SLKVLLIEAG  466 (720)
Q Consensus       435 DVVIIGSGiAGLvAA~~LAea~-G~KVLVLEKG  466 (720)
                      .|.|||.|..|+..|..|+++. |++|+++|+.
T Consensus         7 kI~VIG~G~mG~~lA~~La~~g~G~~V~~~d~~   39 (467)
T 2q3e_A            7 KICCIGAGYVGGPTCSVIAHMCPEIRVTVVDVN   39 (467)
T ss_dssp             EEEEECCSTTHHHHHHHHHHHCTTSEEEEECSC
T ss_pred             EEEEECCCHHHHHHHHHHHhcCCCCEEEEEECC
Confidence            6999999999999999999972 6899999974

>1y1p_A ARII, aldehyde reductase II; rossmann fold, short chain dehydrogenase reductase, oxidoreductase; HET: NMN AMP; 1.60A {Sporidiobolus salmonicolor} SCOP: c.2.1.2 PDB: 1ujm_A* 1zze_A

Probab=82.27  E-value=1.1  Score=45.72  Aligned_cols=31  Identities=19%  Similarity=0.198  Sum_probs=28.9

Q ss_pred             cEEEECC-cHHHHHHHHHHHhcCCCcEEEEccC
Q psy14408        435 DIIIVGA-SAAGCVLANRLSEVSSLKVLLIEAG  466 (720)
Q Consensus       435 DVVIIGS-GiAGLvAA~~LAea~G~KVLVLEKG  466 (720)
                      -|+|.|| |..|..+|.+|+++ |++|+++.|.
T Consensus        13 ~vlVTGatG~iG~~l~~~L~~~-g~~V~~~~r~   44 (342)
T 1y1p_A           13 LVLVTGANGFVASHVVEQLLEH-GYKVRGTARS   44 (342)
T ss_dssp             EEEEETTTSHHHHHHHHHHHHT-TCEEEEEESS
T ss_pred             EEEEECCccHHHHHHHHHHHHC-CCEEEEEeCC
Confidence            5999998 99999999999999 9999999875

>2bka_A CC3, TAT-interacting protein TIP30; NADPH, PEG600, transcription; HET: NDP PE8; 1.7A {Homo sapiens} SCOP: c.2.1.2 PDB: 2fmu_A

Probab=82.26  E-value=1.2  Score=43.48  Aligned_cols=33  Identities=33%  Similarity=0.444  Sum_probs=29.5

Q ss_pred             cEEEEC-CcHHHHHHHHHHHhcCCC--cEEEEccCCC
Q psy14408        435 DIIIVG-ASAAGCVLANRLSEVSSL--KVLLIEAGGD  468 (720)
Q Consensus       435 DVVIIG-SGiAGLvAA~~LAea~G~--KVLVLEKG~~  468 (720)
                      -|+|.| +|..|..+|.+|+++ |+  +|+++.|...
T Consensus        20 ~vlVtGasg~iG~~l~~~L~~~-G~~~~V~~~~r~~~   55 (242)
T 2bka_A           20 SVFILGASGETGRVLLKEILEQ-GLFSKVTLIGRRKL   55 (242)
T ss_dssp             EEEEECTTSHHHHHHHHHHHHH-TCCSEEEEEESSCC
T ss_pred             eEEEECCCcHHHHHHHHHHHcC-CCCCEEEEEEcCCC
Confidence            589999 599999999999999 99  9999998743

>1y6j_A L-lactate dehydrogenase; southeast collaboratory for structural genomics, secsg, protein struc initiative, PSI, oxidoreductase; 3.01A {Clostridium thermocellum} SCOP: c.2.1.5 d.162.1.1

Probab=82.16  E-value=1.1  Score=47.19  Aligned_cols=33  Identities=21%  Similarity=0.260  Sum_probs=29.8

Q ss_pred             ccEEEECCcHHHHHHHHHHHhcCCC--cEEEEccCC
Q psy14408        434 FDIIIVGASAAGCVLANRLSEVSSL--KVLLIEAGG  467 (720)
Q Consensus       434 yDVVIIGSGiAGLvAA~~LAea~G~--KVLVLEKG~  467 (720)
                      ..|+|||+|..|.++|..|+.. |+  .|+++|...
T Consensus         8 ~KI~IiGaG~vG~~~a~~l~~~-~~~~ev~L~Di~~   42 (318)
T 1y6j_A            8 SKVAIIGAGFVGASAAFTMALR-QTANELVLIDVFK   42 (318)
T ss_dssp             CCEEEECCSHHHHHHHHHHHHT-TCSSEEEEECCC-
T ss_pred             CEEEEECCCHHHHHHHHHHHhC-CCCCEEEEEeCCh
Confidence            4899999999999999999998 87  899999863

>3fbt_A Chorismate mutase and shikimate 5-dehydrogenase fusion protein; structural genomics, oxidoreductase, amino-acid biosynthesis; 2.10A {Clostridium acetobutylicum}

Probab=82.13  E-value=0.91  Score=47.37  Aligned_cols=32  Identities=9%  Similarity=0.186  Sum_probs=29.5

Q ss_pred             ccEEEECCcHHHHHHHHHHHhcCCC-cEEEEccC
Q psy14408        434 FDIIIVGASAAGCVLANRLSEVSSL-KVLLIEAG  466 (720)
Q Consensus       434 yDVVIIGSGiAGLvAA~~LAea~G~-KVLVLEKG  466 (720)
                      -.|+|||+|-+|-++|..|++. |. +|+|+.|.
T Consensus       123 k~vlvlGaGGaaraia~~L~~~-G~~~v~v~nRt  155 (282)
T 3fbt_A          123 NICVVLGSGGAARAVLQYLKDN-FAKDIYVVTRN  155 (282)
T ss_dssp             SEEEEECSSTTHHHHHHHHHHT-TCSEEEEEESC
T ss_pred             CEEEEECCcHHHHHHHHHHHHc-CCCEEEEEeCC
Confidence            3799999999999999999999 98 89999886

>2wyu_A Enoyl-[acyl carrier protein] reductase; oxidoreductase, fatty acid biosynthesis, oxidation reduction; 1.50A {Thermus thermophilus} PDB: 1ulu_A 2wyv_A* 2wyw_A* 2yw9_A*

Probab=82.03  E-value=0.98  Score=45.21  Aligned_cols=32  Identities=22%  Similarity=0.382  Sum_probs=28.6

Q ss_pred             cEEEECC---cHHHHHHHHHHHhcCCCcEEEEccCC
Q psy14408        435 DIIIVGA---SAAGCVLANRLSEVSSLKVLLIEAGG  467 (720)
Q Consensus       435 DVVIIGS---GiAGLvAA~~LAea~G~KVLVLEKG~  467 (720)
                      -|+|.||   |..|..+|.+|+++ |++|++++|..
T Consensus        10 ~vlVTGas~~~gIG~~ia~~l~~~-G~~V~~~~r~~   44 (261)
T 2wyu_A           10 KALVMGVTNQRSLGFAIAAKLKEA-GAEVALSYQAE   44 (261)
T ss_dssp             EEEEESCCSSSSHHHHHHHHHHHH-TCEEEEEESCG
T ss_pred             EEEEECCCCCCcHHHHHHHHHHHC-CCEEEEEcCCH
Confidence            4899997   58999999999999 99999998863

>1uay_A Type II 3-hydroxyacyl-COA dehydrogenase; beta oxidation, fatty acid, structural genomi structural genomics/proteomics initiative, RSGI; HET: ADN; 1.40A {Thermus thermophilus} SCOP: c.2.1.2

Probab=81.98  E-value=1.3  Score=43.11  Aligned_cols=33  Identities=18%  Similarity=0.340  Sum_probs=28.6

Q ss_pred             cEEEECC-cHHHHHHHHHHHhcCCCcEEEEccCCC
Q psy14408        435 DIIIVGA-SAAGCVLANRLSEVSSLKVLLIEAGGD  468 (720)
Q Consensus       435 DVVIIGS-GiAGLvAA~~LAea~G~KVLVLEKG~~  468 (720)
                      -|+|.|| |..|..+|.+|+++ |++|++++|...
T Consensus         4 ~vlVtGasggiG~~la~~l~~~-G~~V~~~~r~~~   37 (242)
T 1uay_A            4 SALVTGGASGLGRAAALALKAR-GYRVVVLDLRRE   37 (242)
T ss_dssp             EEEEETTTSHHHHHHHHHHHHH-TCEEEEEESSCC
T ss_pred             EEEEeCCCChHHHHHHHHHHHC-CCEEEEEccCcc
Confidence            3788875 78899999999999 999999998754

>2ahr_A Putative pyrroline carboxylate reductase; pyrroline reductase, proline biosynthesis, NAD(P protein, rossmann fold, doain swapping; HET: NAP; 2.15A {Streptococcus pyogenes} SCOP: a.100.1.10 c.2.1.6 PDB: 2amf_A

Probab=81.98  E-value=0.98  Score=45.16  Aligned_cols=31  Identities=13%  Similarity=0.296  Sum_probs=29.2

Q ss_pred             cEEEECCcHHHHHHHHHHHhcCCCcEEEEccC
Q psy14408        435 DIIIVGASAAGCVLANRLSEVSSLKVLLIEAG  466 (720)
Q Consensus       435 DVVIIGSGiAGLvAA~~LAea~G~KVLVLEKG  466 (720)
                      .|.|||+|..|...|..|++. |++|.++++.
T Consensus         5 ~i~iiG~G~mG~~~a~~l~~~-g~~v~~~~~~   35 (259)
T 2ahr_A            5 KIGIIGVGKMASAIIKGLKQT-PHELIISGSS   35 (259)
T ss_dssp             EEEEECCSHHHHHHHHHHTTS-SCEEEEECSS
T ss_pred             EEEEECCCHHHHHHHHHHHhC-CCeEEEECCC
Confidence            699999999999999999998 9999999985

>2cfc_A 2-(R)-hydroxypropyl-COM dehydrogenase; NAD, oxidoreductase; HET: NAD KPC; 1.8A {Xanthobacter autotrophicus}

Probab=81.97  E-value=1.2  Score=43.73  Aligned_cols=30  Identities=27%  Similarity=0.401  Sum_probs=26.8

Q ss_pred             EEEECC-cHHHHHHHHHHHhcCCCcEEEEccC
Q psy14408        436 IIIVGA-SAAGCVLANRLSEVSSLKVLLIEAG  466 (720)
Q Consensus       436 VVIIGS-GiAGLvAA~~LAea~G~KVLVLEKG  466 (720)
                      |+|.|| |..|..+|.+|+++ |++|++++|.
T Consensus         5 vlItGasggiG~~~a~~l~~~-G~~V~~~~r~   35 (250)
T 2cfc_A            5 AIVTGASSGNGLAIATRFLAR-GDRVAALDLS   35 (250)
T ss_dssp             EEEETTTSHHHHHHHHHHHHT-TCEEEEEESC
T ss_pred             EEEeCCCchHHHHHHHHHHHC-CCEEEEEeCC
Confidence            788875 78899999999999 9999999986

>3tri_A Pyrroline-5-carboxylate reductase; amino acid biosynthesis, oxidoreductase; HET: NAP; 2.50A {Coxiella burnetii}

Probab=81.88  E-value=1.4  Score=45.24  Aligned_cols=33  Identities=9%  Similarity=0.117  Sum_probs=30.2

Q ss_pred             ccEEEECCcHHHHHHHHHHHhcCCC---cEEEEccCC
Q psy14408        434 FDIIIVGASAAGCVLANRLSEVSSL---KVLLIEAGG  467 (720)
Q Consensus       434 yDVVIIGSGiAGLvAA~~LAea~G~---KVLVLEKG~  467 (720)
                      ..|.|||+|..|.+.|..|+++ |+   +|+|.|+..
T Consensus         4 ~~I~iIG~G~mG~aia~~l~~~-g~~~~~V~v~dr~~   39 (280)
T 3tri_A            4 SNITFIGGGNMARNIVVGLIAN-GYDPNRICVTNRSL   39 (280)
T ss_dssp             SCEEEESCSHHHHHHHHHHHHT-TCCGGGEEEECSSS
T ss_pred             CEEEEEcccHHHHHHHHHHHHC-CCCCCeEEEEeCCH
Confidence            3699999999999999999999 98   999999864

>3ldh_A Lactate dehydrogenase; oxidoreductase, CHOH donor, NAD acceptor; HET: NAD; 3.00A {Squalus acanthias} SCOP: i.12.1.1

Probab=81.84  E-value=1.1  Score=47.95  Aligned_cols=32  Identities=28%  Similarity=0.303  Sum_probs=29.3

Q ss_pred             ccEEEECCcHHHHHHHHHHHhcCCC--cEEEEccC
Q psy14408        434 FDIIIVGASAAGCVLANRLSEVSSL--KVLLIEAG  466 (720)
Q Consensus       434 yDVVIIGSGiAGLvAA~~LAea~G~--KVLVLEKG  466 (720)
                      .-|.|||+|..|.++|..|+.. |+  .|+|+|..
T Consensus        22 ~kV~ViGaG~vG~~~a~~la~~-g~~~ev~L~Di~   55 (330)
T 3ldh_A           22 NKITVVGCDAVGMADAISVLMK-DLADEVALVDVM   55 (330)
T ss_dssp             CEEEEESTTHHHHHHHHHHHHH-CCCSEEEEECSC
T ss_pred             CEEEEECCCHHHHHHHHHHHhC-CCCCeEEEEECC
Confidence            3799999999999999999999 87  89999974

>3awd_A GOX2181, putative polyol dehydrogenase; oxidoreductase; 1.80A {Gluconobacter oxydans}

Probab=81.82  E-value=1.2  Score=43.96  Aligned_cols=31  Identities=19%  Similarity=0.365  Sum_probs=27.3

Q ss_pred             cEEEECC-cHHHHHHHHHHHhcCCCcEEEEccC
Q psy14408        435 DIIIVGA-SAAGCVLANRLSEVSSLKVLLIEAG  466 (720)
Q Consensus       435 DVVIIGS-GiAGLvAA~~LAea~G~KVLVLEKG  466 (720)
                      -|+|.|| |..|..+|.+|+++ |++|++++|.
T Consensus        15 ~vlItGasggiG~~la~~l~~~-G~~V~~~~r~   46 (260)
T 3awd_A           15 VAIVTGGAQNIGLACVTALAEA-GARVIIADLD   46 (260)
T ss_dssp             EEEEETTTSHHHHHHHHHHHHT-TCEEEEEESC
T ss_pred             EEEEeCCCchHHHHHHHHHHHC-CCEEEEEeCC
Confidence            4788875 78899999999999 9999999986

>3orf_A Dihydropteridine reductase; alpha-beta-alpha sandwich, rossmann fold, oxidoreductase (AC NADH), NADH binding, oxidoreductase; HET: NAD; 2.16A {Dictyostelium discoideum}

Probab=81.81  E-value=1.3  Score=44.08  Aligned_cols=33  Identities=18%  Similarity=0.362  Sum_probs=28.9

Q ss_pred             cEEEECC-cHHHHHHHHHHHhcCCCcEEEEccCCC
Q psy14408        435 DIIIVGA-SAAGCVLANRLSEVSSLKVLLIEAGGD  468 (720)
Q Consensus       435 DVVIIGS-GiAGLvAA~~LAea~G~KVLVLEKG~~  468 (720)
                      -|||.|| |-.|..+|.+|+++ |++|++++|...
T Consensus        24 ~vlITGas~gIG~~la~~l~~~-G~~V~~~~r~~~   57 (251)
T 3orf_A           24 NILVLGGSGALGAEVVKFFKSK-SWNTISIDFREN   57 (251)
T ss_dssp             EEEEETTTSHHHHHHHHHHHHT-TCEEEEEESSCC
T ss_pred             EEEEECCCCHHHHHHHHHHHHC-CCEEEEEeCCcc
Confidence            4888886 67899999999999 999999998754

>3t4e_A Quinate/shikimate dehydrogenase; structural genomics, center for structural genomics of infec diseases, csgid; HET: NAD; 1.95A {Salmonella enterica subsp} PDB: 1npd_A* 1o9b_A* 1vi2_A*

Probab=81.75  E-value=1.1  Score=47.41  Aligned_cols=32  Identities=13%  Similarity=0.301  Sum_probs=29.3

Q ss_pred             ccEEEECCcHHHHHHHHHHHhcCCC-cEEEEccC
Q psy14408        434 FDIIIVGASAAGCVLANRLSEVSSL-KVLLIEAG  466 (720)
Q Consensus       434 yDVVIIGSGiAGLvAA~~LAea~G~-KVLVLEKG  466 (720)
                      -.|+|||+|-+|.++|..|++. |. +|+|+.|.
T Consensus       149 k~~lVlGAGGaaraia~~L~~~-G~~~v~v~nRt  181 (312)
T 3t4e_A          149 KTMVLLGAGGAATAIGAQAAIE-GIKEIKLFNRK  181 (312)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHT-TCSEEEEEECS
T ss_pred             CEEEEECcCHHHHHHHHHHHHc-CCCEEEEEECC
Confidence            3799999999999999999999 98 79999886

>1gpj_A Glutamyl-tRNA reductase; tRNA-dependent tetrapyrrole biosynthesis; HET: GMC CIT; 1.95A {Methanopyrus kandleri} SCOP: a.151.1.1 c.2.1.7 d.58.39.1

Probab=81.72  E-value=1.1  Score=48.64  Aligned_cols=32  Identities=25%  Similarity=0.413  Sum_probs=29.5

Q ss_pred             ccEEEECCcHHHHHHHHHHHhcCCC-cEEEEccC
Q psy14408        434 FDIIIVGASAAGCVLANRLSEVSSL-KVLLIEAG  466 (720)
Q Consensus       434 yDVVIIGSGiAGLvAA~~LAea~G~-KVLVLEKG  466 (720)
                      -.|+|||+|-.|..+|..|... |. +|++++|.
T Consensus       168 ~~VlIiGaG~iG~~~a~~l~~~-G~~~V~v~~r~  200 (404)
T 1gpj_A          168 KTVLVVGAGEMGKTVAKSLVDR-GVRAVLVANRT  200 (404)
T ss_dssp             CEEEEESCCHHHHHHHHHHHHH-CCSEEEEECSS
T ss_pred             CEEEEEChHHHHHHHHHHHHHC-CCCEEEEEeCC
Confidence            3699999999999999999998 98 89999986

>1qyc_A Phenylcoumaran benzylic ether reductase PT1; NADPH-dependent aromatic alcohol reductases, pcber, PLR, IFR, lignans, isoflavonoids, plant protein; 2.20A {Pinus taeda} SCOP: c.2.1.2

Probab=81.68  E-value=1.1  Score=45.33  Aligned_cols=32  Identities=19%  Similarity=0.311  Sum_probs=29.6

Q ss_pred             cEEEECC-cHHHHHHHHHHHhcCCCcEEEEccCC
Q psy14408        435 DIIIVGA-SAAGCVLANRLSEVSSLKVLLIEAGG  467 (720)
Q Consensus       435 DVVIIGS-GiAGLvAA~~LAea~G~KVLVLEKG~  467 (720)
                      -|+|+|| |..|..+|..|+++ |++|+++.|..
T Consensus         6 ~ilVtGatG~iG~~l~~~L~~~-g~~V~~l~R~~   38 (308)
T 1qyc_A            6 RILLIGATGYIGRHVAKASLDL-GHPTFLLVRES   38 (308)
T ss_dssp             CEEEESTTSTTHHHHHHHHHHT-TCCEEEECCCC
T ss_pred             EEEEEcCCcHHHHHHHHHHHhC-CCCEEEEECCc
Confidence            4999997 99999999999999 99999999874

>4b4o_A Epimerase family protein SDR39U1; isomerase; HET: NDP PE4; 2.70A {Homo sapiens}

Probab=81.66  E-value=1.2  Score=44.95  Aligned_cols=32  Identities=19%  Similarity=0.291  Sum_probs=29.3

Q ss_pred             cEEEECC-cHHHHHHHHHHHhcCCCcEEEEccCC
Q psy14408        435 DIIIVGA-SAAGCVLANRLSEVSSLKVLLIEAGG  467 (720)
Q Consensus       435 DVVIIGS-GiAGLvAA~~LAea~G~KVLVLEKG~  467 (720)
                      -|+|.|| |..|...+.+|.++ |++|++|-|..
T Consensus         2 kILVTGatGfIG~~L~~~L~~~-G~~V~~l~R~~   34 (298)
T 4b4o_A            2 RVLVGGGTGFIGTALTQLLNAR-GHEVTLVSRKP   34 (298)
T ss_dssp             EEEEETTTSHHHHHHHHHHHHT-TCEEEEEESSC
T ss_pred             EEEEECCCCHHHHHHHHHHHHC-CCEEEEEECCC
Confidence            3899998 99999999999999 99999998864

>2o7s_A DHQ-SDH PR, bifunctional 3-dehydroquinate dehydratase/shikima dehydrogenase; shikimate, NADPH, dehydroshikimate, bifunctional enzyme; HET: DHK TLA NAP; 1.78A {Arabidopsis thaliana} PDB: 2o7q_A* 2gpt_A*

Probab=81.53  E-value=0.9  Score=51.09  Aligned_cols=31  Identities=29%  Similarity=0.455  Sum_probs=28.2

Q ss_pred             cEEEECCcHHHHHHHHHHHhcCCCcEEEEccC
Q psy14408        435 DIIIVGASAAGCVLANRLSEVSSLKVLLIEAG  466 (720)
Q Consensus       435 DVVIIGSGiAGLvAA~~LAea~G~KVLVLEKG  466 (720)
                      .|+|+|||-+|.++|..|++. |.+|+|+.|.
T Consensus       366 ~vlV~GaGGig~aia~~L~~~-G~~V~i~~R~  396 (523)
T 2o7s_A          366 TVVVIGAGGAGKALAYGAKEK-GAKVVIANRT  396 (523)
T ss_dssp             CEEEECCSHHHHHHHHHHHHH-CC-CEEEESS
T ss_pred             EEEEECCcHHHHHHHHHHHHC-CCEEEEEECC
Confidence            699999999999999999999 9999999885

>3k31_A Enoyl-(acyl-carrier-protein) reductase; ssgcid, NIH, niaid, SBRI, UW, decode, eonyl-(acyl-carrier-PR reductase, NAD, oxidoreductase; HET: NAD; 1.80A {Anaplasma phagocytophilum} PDB: 3k2e_A*

Probab=81.42  E-value=1.1  Score=46.05  Aligned_cols=31  Identities=16%  Similarity=0.200  Sum_probs=28.0

Q ss_pred             cEEEECCc---HHHHHHHHHHHhcCCCcEEEEccC
Q psy14408        435 DIIIVGAS---AAGCVLANRLSEVSSLKVLLIEAG  466 (720)
Q Consensus       435 DVVIIGSG---iAGLvAA~~LAea~G~KVLVLEKG  466 (720)
                      -|||.||+   -.|..+|.+|+++ |.+|+++++.
T Consensus        32 ~vlVTGasg~~GIG~~ia~~la~~-G~~V~~~~r~   65 (296)
T 3k31_A           32 KGVIIGVANDKSLAWGIAKAVCAQ-GAEVALTYLS   65 (296)
T ss_dssp             EEEEECCCSTTSHHHHHHHHHHHT-TCEEEEEESS
T ss_pred             EEEEEeCCCCCCHHHHHHHHHHHC-CCEEEEEeCC
Confidence            58899985   7899999999999 9999999986

>2cvz_A Dehydrogenase, 3-hydroxyisobutyrate dehydrogenase; valine catabolism, NADP+, structural GEN riken structural genomics/proteomics initiative; HET: NDP; 1.80A {Thermus thermophilus} SCOP: a.100.1.1 c.2.1.6 PDB: 1wp4_A*

Probab=81.38  E-value=1.1  Score=45.25  Aligned_cols=31  Identities=19%  Similarity=0.320  Sum_probs=28.3

Q ss_pred             cEEEECCcHHHHHHHHHHHhcCCCcEEEEccCC
Q psy14408        435 DIIIVGASAAGCVLANRLSEVSSLKVLLIEAGG  467 (720)
Q Consensus       435 DVVIIGSGiAGLvAA~~LAea~G~KVLVLEKG~  467 (720)
                      .|.|||+|..|...|..|++  |++|+++++..
T Consensus         3 ~i~iiG~G~~G~~~a~~l~~--g~~V~~~~~~~   33 (289)
T 2cvz_A            3 KVAFIGLGAMGYPMAGHLAR--RFPTLVWNRTF   33 (289)
T ss_dssp             CEEEECCSTTHHHHHHHHHT--TSCEEEECSST
T ss_pred             eEEEEcccHHHHHHHHHHhC--CCeEEEEeCCH
Confidence            48999999999999999997  89999999863

>3dfu_A Uncharacterized protein from 6-phosphogluconate dehydrogenase-like family; putative rossmann-like dehydrogenase, structural genomics; HET: MSE; 2.07A {Corynebacterium glutamicum}

Probab=81.24  E-value=0.4  Score=48.83  Aligned_cols=31  Identities=19%  Similarity=0.246  Sum_probs=29.3

Q ss_pred             cEEEECCcHHHHHHHHHHHhcCCCcEEEEccC
Q psy14408        435 DIIIVGASAAGCVLANRLSEVSSLKVLLIEAG  466 (720)
Q Consensus       435 DVVIIGSGiAGLvAA~~LAea~G~KVLVLEKG  466 (720)
                      .|.|||.|..|.+.|..|+++ |++|+++++.
T Consensus         8 kI~IIG~G~~G~sLA~~L~~~-G~~V~~~~~~   38 (232)
T 3dfu_A            8 RVGIFDDGSSTVNMAEKLDSV-GHYVTVLHAP   38 (232)
T ss_dssp             EEEEECCSCCCSCHHHHHHHT-TCEEEECSSG
T ss_pred             EEEEEeeCHHHHHHHHHHHHC-CCEEEEecCH
Confidence            699999999999999999999 9999999874

>3qiv_A Short-chain dehydrogenase or 3-oxoacyl-[acyl-CARR protein] reductase; structural genomics; 2.25A {Mycobacterium avium subsp}

Probab=81.23  E-value=1.3  Score=43.79  Aligned_cols=31  Identities=19%  Similarity=0.275  Sum_probs=27.4

Q ss_pred             cEEEECC-cHHHHHHHHHHHhcCCCcEEEEccC
Q psy14408        435 DIIIVGA-SAAGCVLANRLSEVSSLKVLLIEAG  466 (720)
Q Consensus       435 DVVIIGS-GiAGLvAA~~LAea~G~KVLVLEKG  466 (720)
                      -|+|.|| |-.|..+|.+|+++ |++|++++|.
T Consensus        11 ~vlITGas~giG~~~a~~l~~~-G~~V~~~~r~   42 (253)
T 3qiv_A           11 VGIVTGSGGGIGQAYAEALARE-GAAVVVADIN   42 (253)
T ss_dssp             EEEEETTTSHHHHHHHHHHHHT-TCEEEEEESC
T ss_pred             EEEEECCCChHHHHHHHHHHHC-CCEEEEEcCC
Confidence            4788886 67799999999999 9999999985

>3k30_A Histamine dehydrogenase; 6-S-cysteinyl-FMN, ADP binding site, oxidoreductase; HET: FMN ADP; 2.70A {Pimelobacter simplex}

Probab=81.19  E-value=0.94  Score=52.37  Aligned_cols=33  Identities=18%  Similarity=0.362  Sum_probs=30.7

Q ss_pred             cEEEEC--CcHHHHHHHHHHHhcCCCcEEEEccCCC
Q psy14408        435 DIIIVG--ASAAGCVLANRLSEVSSLKVLLIEAGGD  468 (720)
Q Consensus       435 DVVIIG--SGiAGLvAA~~LAea~G~KVLVLEKG~~  468 (720)
                      .|+|||  +|..|+-+|..|++. |.+|+|+++...
T Consensus       525 ~VvViG~ggG~~g~e~A~~L~~~-g~~Vtlv~~~~~  559 (690)
T 3k30_A          525 KVVVYDDDHYYLGGVVAELLAQK-GYEVSIVTPGAQ  559 (690)
T ss_dssp             EEEEEECSCSSHHHHHHHHHHHT-TCEEEEEESSSS
T ss_pred             EEEEEcCCCCccHHHHHHHHHhC-CCeeEEEecccc
Confidence            699999  999999999999999 999999998753

>3qvo_A NMRA family protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, unknown function; HET: MNB; 2.30A {Shigella flexneri 2A}

Probab=81.07  E-value=0.94  Score=44.49  Aligned_cols=32  Identities=19%  Similarity=0.359  Sum_probs=29.1

Q ss_pred             cEEEEC-CcHHHHHHHHHHHhcCC-CcEEEEccCC
Q psy14408        435 DIIIVG-ASAAGCVLANRLSEVSS-LKVLLIEAGG  467 (720)
Q Consensus       435 DVVIIG-SGiAGLvAA~~LAea~G-~KVLVLEKG~  467 (720)
                      -|+|+| +|..|..+|.+|+++ | ++|+++.|..
T Consensus        25 ~vlVtGatG~iG~~l~~~L~~~-G~~~V~~~~R~~   58 (236)
T 3qvo_A           25 NVLILGAGGQIARHVINQLADK-QTIKQTLFARQP   58 (236)
T ss_dssp             EEEEETTTSHHHHHHHHHHTTC-TTEEEEEEESSG
T ss_pred             EEEEEeCCcHHHHHHHHHHHhC-CCceEEEEEcCh
Confidence            599999 599999999999999 9 8999999873

>1qsg_A Enoyl-[acyl-carrier-protein] reductase; enoyl reductase, oxidoreductase; HET: GLC NAD TCL; 1.75A {Escherichia coli} SCOP: c.2.1.2 PDB: 1c14_A* 1i2z_A* 1i30_A* 1lx6_A* 1lxc_A* 1mfp_A* 2fhs_A 1qg6_A* 1dfg_A* 1dfh_A* 1d8a_A* 1dfi_A* 3pje_A* 3pjd_A* 3pjf_A*

Probab=80.96  E-value=0.99  Score=45.22  Aligned_cols=32  Identities=9%  Similarity=0.185  Sum_probs=28.4

Q ss_pred             cEEEECC---cHHHHHHHHHHHhcCCCcEEEEccCC
Q psy14408        435 DIIIVGA---SAAGCVLANRLSEVSSLKVLLIEAGG  467 (720)
Q Consensus       435 DVVIIGS---GiAGLvAA~~LAea~G~KVLVLEKG~  467 (720)
                      -|||.||   |..|..+|.+|+++ |++|++++|..
T Consensus        11 ~vlVTGas~~~gIG~~ia~~l~~~-G~~V~~~~r~~   45 (265)
T 1qsg_A           11 RILVTGVASKLSIAYGIAQAMHRE-GAELAFTYQND   45 (265)
T ss_dssp             EEEECCCCSTTSHHHHHHHHHHHT-TCEEEEEESST
T ss_pred             EEEEECCCCCCCHHHHHHHHHHHC-CCEEEEEcCcH
Confidence            3888897   58999999999999 99999999874

>2wsb_A Galactitol dehydrogenase; oxidoreductase, SDR, rossmann fold, tagatose; HET: NAD; 1.25A {Rhodobacter sphaeroides} PDB: 2wdz_A* 3lqf_A*

Probab=80.95  E-value=1.3  Score=43.43  Aligned_cols=31  Identities=19%  Similarity=0.359  Sum_probs=27.0

Q ss_pred             cEEEECC-cHHHHHHHHHHHhcCCCcEEEEccC
Q psy14408        435 DIIIVGA-SAAGCVLANRLSEVSSLKVLLIEAG  466 (720)
Q Consensus       435 DVVIIGS-GiAGLvAA~~LAea~G~KVLVLEKG  466 (720)
                      -|+|.|| |..|..+|.+|+++ |++|++++|.
T Consensus        13 ~vlITGasggiG~~la~~l~~~-G~~V~~~~r~   44 (254)
T 2wsb_A           13 CAAVTGAGSGIGLEICRAFAAS-GARLILIDRE   44 (254)
T ss_dssp             EEEEETTTSHHHHHHHHHHHHT-TCEEEEEESC
T ss_pred             EEEEECCCcHHHHHHHHHHHHC-CCEEEEEeCC
Confidence            3777775 78899999999999 9999999986

>3i1j_A Oxidoreductase, short chain dehydrogenase/reducta; dimer, MIXE beta, structural genomics, PSI-2; 1.90A {Pseudomonas syringae PV} SCOP: c.2.1.0

Probab=80.89  E-value=1.1  Score=44.17  Aligned_cols=30  Identities=23%  Similarity=0.383  Sum_probs=0.0

Q ss_pred             EEEECC-cHHHHHHHHHHHhcCCCcEEEEccC
Q psy14408        436 IIIVGA-SAAGCVLANRLSEVSSLKVLLIEAG  466 (720)
Q Consensus       436 VVIIGS-GiAGLvAA~~LAea~G~KVLVLEKG  466 (720)
                      |||.|| |-.|..+|.+|+++ |++|++++|.
T Consensus        17 vlITGas~gIG~~ia~~l~~~-G~~V~~~~r~   47 (247)
T 3i1j_A           17 ILVTGAARGIGAAAARAYAAH-GASVVLLGRT   47 (247)
T ss_dssp             EEESSTTSHHHHHHHHHHHHT-TCEEEEEESC
T ss_pred             EEEeCCCChHHHHHHHHHHHC-CCEEEEEecC

>3f1l_A Uncharacterized oxidoreductase YCIK; E. coli, NADP+,; 0.95A {Escherichia coli K12} SCOP: c.2.1.0 PDB: 3f1k_A 3e9q_A* 3f5q_A 3gz4_A* 3f5s_A 3gy0_A* 3iah_A* 3g1t_A

Probab=80.87  E-value=1.4  Score=44.02  Aligned_cols=30  Identities=23%  Similarity=0.358  Sum_probs=0.0

Q ss_pred             EEEECC-cHHHHHHHHHHHhcCCCcEEEEccC
Q psy14408        436 IIIVGA-SAAGCVLANRLSEVSSLKVLLIEAG  466 (720)
Q Consensus       436 VVIIGS-GiAGLvAA~~LAea~G~KVLVLEKG  466 (720)
                      |||.|| |-.|..+|.+|+++ |.+|++++|.
T Consensus        15 vlVTGas~gIG~aia~~l~~~-G~~V~~~~r~   45 (252)
T 3f1l_A           15 ILVTGASDGIGREAAMTYARY-GATVILLGRN   45 (252)
T ss_dssp             EEEESTTSHHHHHHHHHHHHT-TCEEEEEESC
T ss_pred             EEEeCCCChHHHHHHHHHHHC-CCEEEEEeCC

>1yb4_A Tartronic semialdehyde reductase; structural genomics, oxidoreductase, salmonella typhimurium LT2, PSI, protein ST initiative; 2.40A {Salmonella typhimurium}

Probab=80.71  E-value=0.77  Score=46.63  Aligned_cols=28  Identities=14%  Similarity=0.251  Sum_probs=0.0

Q ss_pred             EEEECCcHHHHHHHHHHHhcCCCcEEEEc
Q psy14408        436 IIIVGASAAGCVLANRLSEVSSLKVLLIE  464 (720)
Q Consensus       436 VVIIGSGiAGLvAA~~LAea~G~KVLVLE  464 (720)
                      |.|||+|..|...|..|++. |++|++++
T Consensus         6 i~iiG~G~~G~~~a~~l~~~-g~~V~~~~   33 (295)
T 1yb4_A            6 LGFIGLGIMGSPMAINLARA-GHQLHVTT   33 (295)
T ss_dssp             EEECCCSTTHHHHHHHHHHT-TCEEEECC
T ss_pred             EEEEccCHHHHHHHHHHHhC-CCEEEEEc

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	720
d1cf3a1	385	c.3.1.2 (A:3-324,A:521-583) Glucose oxidase {Asper	1e-46
d1gpea1	391	c.3.1.2 (A:1-328,A:525-587) Glucose oxidase {Penic	6e-46
d2f5va1	379	c.3.1.2 (A:43-354,A:553-619) Pyranose 2-oxidase {W	1e-34
d1kdga1	360	c.3.1.2 (A:215-512,A:694-755) Flavoprotein domain	1e-33
d3coxa1	370	c.3.1.2 (A:5-318,A:451-506) Cholesterol oxidase of	3e-32
d1ju2a1	351	c.3.1.2 (A:1-293,A:464-521) Hydroxynitrile lyase {	1e-31
d1n4wa1	367	c.3.1.2 (A:9-318,A:451-507) Cholesterol oxidase of	3e-30
d1rp0a1	278	c.3.1.6 (A:7-284) Thiazole biosynthetic enzyme Thi	4e-08
d2i0za1	251	c.3.1.8 (A:1-192,A:362-420) Flavoprotein BC4706 {B	8e-07
d2bcgg1	297	c.3.1.3 (G:5-301) Guanine nucleotide dissociation	2e-06
d1d5ta1	336	c.3.1.3 (A:-2-291,A:389-431) Guanine nucleotide di	3e-06
d2ivda1	347	c.3.1.2 (A:10-306,A:415-464) Protoporphyrinogen ox	5e-06
d1y0pa2	308	c.3.1.4 (A:111-361,A:512-568) Flavocytochrome c3 (	2e-05
d1qo8a2	317	c.3.1.4 (A:103-359,A:506-565) Flavocytochrome c3 (	4e-05
d2gqfa1	253	c.3.1.8 (A:1-194,A:343-401) Hypothetical protein H	7e-05
d1d4ca2	322	c.3.1.4 (A:103-359,A:506-570) Flavocytochrome c3 (	7e-05
d3c96a1	288	c.3.1.2 (A:4-182,A:294-402) Monooxygenase PhzS {Ps	1e-04
d1onfa1	259	c.3.1.5 (A:1-153,A:271-376) Glutathione reductase	1e-04
d1chua2	305	c.3.1.4 (A:2-237,A:354-422) L-aspartate oxidase {E	1e-04
d3lada1	229	c.3.1.5 (A:1-158,A:278-348) Dihydrolipoamide dehyd	1e-04
d2gf3a1	281	c.3.1.2 (A:1-217,A:322-385) Sarcosine oxidase {Bac	1e-04
d1pn0a1	360	c.3.1.2 (A:1-240,A:342-461) Phenol hydroxylase {So	2e-04
d2bs2a2	336	c.3.1.4 (A:1-250,A:372-457) Fumarate reductase {Wo	2e-04
d1v59a1	233	c.3.1.5 (A:1-160,A:283-355) Dihydrolipoamide dehyd	3e-04
d1gesa1	217	c.3.1.5 (A:3-146,A:263-335) Glutathione reductase	4e-04
d1dxla1	221	c.3.1.5 (A:4-152,A:276-347) Dihydrolipoamide dehyd	4e-04
d1neka2	330	c.3.1.4 (A:1-235,A:356-450) Succinate dehydogenase	4e-04
d1kf6a2	311	c.3.1.4 (A:0-225,A:358-442) Fumarate reductase {Es	4e-04
d1ryia1	276	c.3.1.2 (A:1-218,A:307-364) Glycine oxidase ThiO {	4e-04
d3grsa1	221	c.3.1.5 (A:18-165,A:291-363) Glutathione reductase	5e-04
d1jnra2	356	c.3.1.4 (A:2-256,A:402-502) Adenylylsulfate reduct	6e-04
d1ojta1	229	c.3.1.5 (A:117-275,A:401-470) Dihydrolipoamide deh	7e-04
d2gjca1	311	c.3.1.6 (A:16-326) Thiazole biosynthetic enzyme Th	8e-04
d1i8ta1	298	c.4.1.3 (A:1-244,A:314-367) UDP-galactopyranose mu	9e-04
d1lvla1	220	c.3.1.5 (A:1-150,A:266-335) Dihydrolipoamide dehyd	0.001
d1b5qa1	347	c.3.1.2 (A:5-293,A:406-463) Polyamine oxidase {Mai	0.001
d2gmha1	380	c.3.1.2 (A:4-236,A:336-482) Electron transfer flav	0.001
d2cula1	230	c.3.1.7 (A:2-231) GidA-related protein TTHA1897 {T	0.001
d1k0ia1	292	c.3.1.2 (A:1-173,A:276-394) p-Hydroxybenzoate hydr	0.002
d1h6va1	235	c.3.1.5 (A:10-170,A:293-366) Mammalian thioredoxin	0.003
d1pj5a2	305	c.3.1.2 (A:4-219,A:339-427) N,N-dimethylglycine ox	0.003
d1ebda1	223	c.3.1.5 (A:7-154,A:272-346) Dihydrolipoamide dehyd	0.003

>d1cf3a1 c.3.1.2 (A:3-324,A:521-583) Glucose oxidase {Aspergillus niger [TaxId: 5061]} Length = 385

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Glucose oxidase
species: Aspergillus niger [TaxId: 5061]

 Score =  168 bits (425), Expect = 1e-46
 Identities = 82/310 (26%), Positives = 123/310 (39%), Gaps = 21/310 (6%)

Query: 426 PYVKSGDCFDIIIVGASAAGCVLANRLSEVSSLKVLLIEAGGDTPIHS---RIPGMSSVL 482
           P   SG   D II G    G   A RL+E  ++ VL+IE+G                  +
Sbjct: 10  PKDVSGRTVDYIIAGGGLTGLTTAARLTENPNISVLVIESGSYESDRGPIIEDLNAYGDI 69

Query: 483 SLSEFDHAYLAEPSQFAGLGVRNARIKITAGKGLGGSSAVQNILYQRGTSYDYENFAKL- 541
             S  DHAY         L   N    I +G GLGGS+ V    + R      +++  + 
Sbjct: 70  FGSSVDHAYETVE-----LATNNQTALIRSGNGLGGSTLVNGGTWTRPHKAQVDSWETVF 124

Query: 542 GYNGWGYDETLKYFVKSEDYRSVIYNESKAVHGTQGYLPVG--------LFKNKENNIIR 593
           G  GW +D    Y +++E  R+    +  A H                      + + I 
Sbjct: 125 GNEGWNWDNVAAYSLQAERARAPNAKQIAAGHYFNASCHGVNGTVHAGPRDTGDDYSPIV 184

Query: 594 EIFETSAQELGYPCPKDMNDRYVDVGFAELPGMTRYGLRFSAADAYLTPIAGKRTNLYVL 653
           +   ++ ++ G P  KD               +    +R  AA  +L P   +R NL VL
Sbjct: 185 KALMSAVEDRGVPTKKDFGCGDPHGVSMFPNTLHEDQVRSDAAREWLLPNY-QRPNLQVL 243

Query: 654 KRSKVTKVIINDQN---VATGVEYVNSKGETVRVTANKEVILTAGAIANAQLLLLSGIGP 710
               V KV+++       A GVE+   KG T  V A  EV+L AG+  +  +L  SGIG 
Sbjct: 244 TGQYVGKVLLSQNGTTPRAVGVEFGTHKGNTHNVYAKHEVLLAAGSAVSPTILEYSGIGM 303

Query: 711 KAHLDEVKIP 720
           K+ L+ + I 
Sbjct: 304 KSILEPLGID 313

>d1gpea1 c.3.1.2 (A:1-328,A:525-587) Glucose oxidase {Penicillium amagasakiense [TaxId: 63559]} Length = 391

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Glucose oxidase
species: Penicillium amagasakiense [TaxId: 63559]

 Score =  166 bits (420), Expect = 6e-46
 Identities = 84/310 (27%), Positives = 132/310 (42%), Gaps = 22/310 (7%)

Query: 426 PYVKSGDCFDIIIVGASAAGCVLANRLSEVSSLKVLLIEAGG---DTPIHSRIPGMSSVL 482
           P   +G  +D II G    G  +A +L+E   +KVL+IE G    +       P     +
Sbjct: 17  PSKVAGKTYDYIIAGGGLTGLTVAAKLTENPKIKVLVIEKGFYESNDGAIIEDPNAYGQI 76

Query: 483 SLSEFDHAYLAEPSQFAGLGVRNARIKITAGKGLGGSSAVQNILYQRGTSYDYENFAK-L 541
             +  D  YL  P       + N    I AGKGLGGS+ +    + R      +++ K  
Sbjct: 77  FGTTVDQNYLTVP------LINNRTNNIKAGKGLGGSTLINGDSWTRPDKVQIDSWEKVF 130

Query: 542 GYNGWGYDETLKYFVKSEDYRSV-------IYNESKAVHGTQGYLPVGLFKN-KENNIIR 593
           G  GW +D   +Y  K+E  R+         ++ +   HGT G +  G   N +  + I 
Sbjct: 131 GMEGWNWDNMFEYMKKAEAARTPTAAQLAAGHSFNATCHGTNGTVQSGARDNGQPWSPIM 190

Query: 594 EIFETSAQELGYPCPKDMNDRYVDVGFAELPGMTRYGLRFSAADAYLTPIAGKRTNLYVL 653
           +    +   LG P  +D    +       +  +    +R  AA A+L P   +R+NL +L
Sbjct: 191 KALMNTVSALGVPVQQDFLCGHPRGVSMIMNNLDENQVRVDAARAWLLPN-YQRSNLEIL 249

Query: 654 KRSKVTKVIINDQ---NVATGVEYVNSKGETVRVTANKEVILTAGAIANAQLLLLSGIGP 710
               V KV+         A GV +  +K     V A  EV+L AG+  +  +L  SGIG 
Sbjct: 250 TGQMVGKVLFKQTASGPQAVGVNFGTNKAVNFDVFAKHEVLLAAGSAISPLILEYSGIGL 309

Query: 711 KAHLDEVKIP 720
           K+ LD+  + 
Sbjct: 310 KSVLDQANVT 319

>d2f5va1 c.3.1.2 (A:43-354,A:553-619) Pyranose 2-oxidase {White-rot fungus (Peniophora sp. SG) [TaxId: 204723]} Length = 379

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Pyranose 2-oxidase
species: White-rot fungus (Peniophora sp. SG) [TaxId: 204723]

 Score =  133 bits (335), Expect = 1e-34
 Identities = 40/307 (13%), Positives = 81/307 (26%), Gaps = 27/307 (8%)

Query: 434 FDIIIVGASAAGCVLANRLSEVSSLKVLLIEAGGDTPIHSRIPGMSSVLSLSEFDHAYLA 493
           +D++IVG+   GC  A  L   +  KV + + G             + +   +    ++ 
Sbjct: 5   YDVVIVGSGPIGCTYARELVG-AGYKVAMFDIGEIDSGLKIGAHKKNTVEYQKNIDKFVN 63

Query: 494 EPSQFAGLGVRNARIKITAGKGLGGSSAVQNILYQRGTSYDYENFAK----------LGY 543
                  L   +  +       L  +S   +  + R  S   ++  +          +G 
Sbjct: 64  VIQ--GQLMSVSVPVNTLVVDTLSPTSWQASTFFVRNGSNPEQDPLRNLSGQAVTRVVGG 121

Query: 544 NGWGYDETLKYFVKSEDYRSVIYNESKAVHGTQGYLPVGLFK-NKENNIIREIFETSAQE 602
               +      F + +                         K         + F+ S + 
Sbjct: 122 MSTHWTCATPRFDREQRPL----LVKDDADADDAEWDRLYTKAESYFQTGTDQFKESIRH 177

Query: 603 LGYPCPKDMN---DRYVDVGFAELPGMTRYGLRFSAADAYLTPI-----AGKRTNLYVLK 654
                         R            +   + +S+A+                   +  
Sbjct: 178 NLVLNKLAEEYKGQRDFQQIPLAATRRSPTFVEWSSANTVFDLQNRPNTDAPEERFNLFP 237

Query: 655 RSKVTKVIINDQN-VATGVEYVNSKGETVRVTANKEVILTAGAIANAQLLLLSGIGPKAH 713
                +V+ N  N     +   +              +LTAGA+ N QLL+ SG G    
Sbjct: 238 AVACERVVRNALNSEIESLHIHDLISGDRFEIKADVYVLTAGAVHNTQLLVNSGFGQLGR 297

Query: 714 LDEVKIP 720
            +    P
Sbjct: 298 PNPTNPP 304

>d1kdga1 c.3.1.2 (A:215-512,A:694-755) Flavoprotein domain of flavocytochrome cellobiose dehydrogenase (CDH), FAD-binding domain {Fungus (Phanerochaete chrysosporium) [TaxId: 5306]} Length = 360

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Flavoprotein domain of flavocytochrome cellobiose dehydrogenase (CDH), FAD-binding domain
species: Fungus (Phanerochaete chrysosporium) [TaxId: 5306]

 Score =  130 bits (327), Expect = 1e-33
 Identities = 59/292 (20%), Positives = 98/292 (33%), Gaps = 23/292 (7%)

Query: 434 FDIIIVGASAAGCVLANRLSEVSSLKVLLIEAGGD---TPIHSRIPGMSSVLSLSEFDHA 490
           +D IIVGA   G + A+RLSE +  KVLL+E GG        + +   ++   L++FD  
Sbjct: 3   YDYIIVGAGPGGIIAADRLSE-AGKKVLLLERGGPSTKQTGGTYVAPWATSSGLTKFDIP 61

Query: 491 YLAEPSQFAGLGVRNARIKITAGKGLGGSSAVQNILYQRGTSYDYENFAKLGYNGWGYDE 550
            L E            +        L G     N         +  +F+        +  
Sbjct: 62  GLFESLFTDSNPFWWCKDITVFAGCLVGGGTSVN--GALYWYPNDGDFSSSVGWPSSWTN 119

Query: 551 TLKYFVKSEDYRSVIYNESKAVHGTQGYLPVGLFKNKENNIIREIFETSAQELGYPCPKD 610
              Y  K         +       T G         +  N++ ++ +   Q        D
Sbjct: 120 HAPYTSKLSSRLPSTDH-----PSTDGQRY----LEQSFNVVSQLLKG--QGYNQATIND 168

Query: 611 MNDRYVDVGFAELPGMTRYGLRFSAADAYLTPIAGKRTNLYVLKRSKVTKVIINDQNVAT 670
             +    V             + +   A     A  R N        V+ V+  + +   
Sbjct: 169 NPNYKDHVFGY--SAFDFLNGKRAGPVATYLQTALARPNFTFKTNVMVSNVVR-NGSQIL 225

Query: 671 GVEYVNS---KGETVRVTANKEVILTAGAIANAQLLLLSGIGPKAHLDEVKI 719
           GV+  +        + VT    VIL+AGA   +++L  SGIGP   +  V+ 
Sbjct: 226 GVQTNDPTLGPNGFIPVTPKGRVILSAGAFGTSRILFQSGIGPTDMIQTVQS 277

>d3coxa1 c.3.1.2 (A:5-318,A:451-506) Cholesterol oxidase of GMC family {Brevibacterium sterolicum [TaxId: 1702]} Length = 370

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Cholesterol oxidase of GMC family
species: Brevibacterium sterolicum [TaxId: 1702]

 Score =  126 bits (317), Expect = 3e-32
 Identities = 52/313 (16%), Positives = 96/313 (30%), Gaps = 51/313 (16%)

Query: 428 VKSGDCFDIIIVGASAAGCVLANRLSEVSSLKVLLIEAGGDTPIHSRIP----------- 476
           +  GD    +++G+   G V A RL++ + +   ++E G                     
Sbjct: 2   LADGDRVPALVIGSGYGGAVAALRLTQ-AGIPTQIVEMGRSWDTPGSDGKIFCGMLNPDK 60

Query: 477 --------GMSSVLSLSEFDHAYLAEPSQFAGLGVRNARIKITAGKGLGGSSAVQNILYQ 528
                       V +   F      +         R + IK+  G+G+GG S V   +  
Sbjct: 61  RSMWLADKTDQPVSNFMGFGINKSIDRYVGVLDSERFSGIKVYQGRGVGGGSLVNGGMAV 120

Query: 529 RGTSYDYENFAKLGYNGWGYDETLKYFVKSEDYRSVIYNESKAVHGTQGYLPVGLFKNKE 588
                 +E       +   Y+   KYF ++     V              +    F++ E
Sbjct: 121 TPKRNYFEEILPSVDSNEMYN---KYFPRANTGLGV------------NNIDQAWFESTE 165

Query: 589 NNIIREIFETSAQELGYPC------------PKDMNDRYVDVGFAELPGMTRYGLRFSAA 636
                     +AQ  G+               K+   +    G            + S  
Sbjct: 166 WYKFARTGRKTAQRSGFTTAFVPNVYDFEYMKKEAAGQVTKSGLGGEVIYGNNAGKKSLD 225

Query: 637 DAYLTPIAGKRTNLYVLKRSKVTKVII-NDQNVATGVEYVNSKGETV--RVTANKEVILT 693
             YL   A     L +    +VTKV        +  +E ++ +G  V  +V     V   
Sbjct: 226 KTYLAQ-AAATGKLTITTLHRVTKVAPATGSGYSVTMEQIDEQGNVVATKVVTADRVFFA 284

Query: 694 AGAIANAQLLLLS 706
           AG++  ++LL+  
Sbjct: 285 AGSVGTSKLLVSM 297

>d1ju2a1 c.3.1.2 (A:1-293,A:464-521) Hydroxynitrile lyase {Almond (Prunus dulcis) [TaxId: 3755]} Length = 351

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Hydroxynitrile lyase
species: Almond (Prunus dulcis) [TaxId: 3755]

 Score =  124 bits (312), Expect = 1e-31
 Identities = 65/289 (22%), Positives = 104/289 (35%), Gaps = 34/289 (11%)

Query: 434 FDIIIVGASAAGCVLANRLSEVSSLKVLLIEAGGDTPIHSRIPGMSSVLSLSEFDHAYLA 493
           +D +IVG   +GC LA  LSE    KVL++E G     +  +      +   + +     
Sbjct: 27  YDYVIVGGGTSGCPLAATLSE--KYKVLVLERGSLPTAYPNVLTADGFVYNLQQEDDGKT 84

Query: 494 EPSQFAGLGVRNARIKITAGKGLGGSSAVQNILYQRGTSYDYENFAKLGYNGWGYDETLK 553
              +F         I    G+ LGG+S +   +Y R  +  Y          W  D   +
Sbjct: 85  PVERFVS----EDGIDNVRGRVLGGTSIINAGVYARANTSIYSASG----VDWDMDLVNQ 136

Query: 554 YFVKSEDYRSVIYNESKAVHGTQGYLPVGLFKNKENNIIREIFETSAQELGYPCPKDMND 613
            +   ED                      +     +   + + +T+  E G       + 
Sbjct: 137 TYEWVEDT---------------------IVYKPNSQSWQSVTKTAFLEAGVHPNHGFSL 175

Query: 614 RYVDVGFAELPGMTRYGLRFSAADAYLTPIAGKRTNLYVLKRSKVTKVIINDQNVATGVE 673
            + +            G R  AAD  L         + V    +           ATGV 
Sbjct: 176 DHEEGTRITGSTFDNKGTR-HAADELLNKGNSNNLRVGVHASVEKIIFSNAPGLTATGVI 234

Query: 674 YVNSKGETVRVT--ANKEVILTAGAIANAQLLLLSGIGPKAHLDEVKIP 720
           Y +S G   +    +  EVI++AG I   QLLLLSG+GP+++L  + IP
Sbjct: 235 YRDSNGTPHQAFVRSKGEVIVSAGTIGTPQLLLLSGVGPESYLSSLNIP 283

>d1n4wa1 c.3.1.2 (A:9-318,A:451-507) Cholesterol oxidase of GMC family {Streptomyces sp. [TaxId: 1931]} Length = 367

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Cholesterol oxidase of GMC family
species: Streptomyces sp. [TaxId: 1931]

 Score =  120 bits (301), Expect = 3e-30
 Identities = 47/297 (15%), Positives = 101/297 (34%), Gaps = 30/297 (10%)

Query: 435 DIIIVGASAAGCVLANRLSEVSSLKVLLIEAGGD----TPIHSRIPGMSSVLSLSEFDHA 490
             +++G      V A RL E + ++ L++E G       P  +   GM +    S +   
Sbjct: 4   PAVVIGTGYGAAVSALRLGE-AGVQTLMLEMGQLWNQPGPDGNIFCGMLNPDKRSSWFKN 62

Query: 491 YLAEPSQFAGL----------------GVRNARIKITAGKGLGGSSAVQNILYQRGTSYD 534
               P                       V   ++ +  G+G+GG S V   +        
Sbjct: 63  RTEAPLGSFLWLDVVNRNIDPYAGVLDRVNYDQMSVYVGRGVGGGSLVNGGMAVEPKRSY 122

Query: 535 YENFAKLGYNGWGYDETLKYFVKSEDYRSVIYNESKAVHGTQGYLPVGLFKNK-ENNIIR 593
           +E            +   +YF ++     V + ++K    T+ Y    + + +     + 
Sbjct: 123 FEEI---LPRVDSSEMYDRYFPRANSMLRVNHIDTKWFEDTEWYKFARVSREQAGKAGLG 179

Query: 594 EIFETSAQELGYPCPKDMNDRYVDVGFAELPGMTRYGLRFSAADAYLTPIAGKRTNLYVL 653
            +F  +  + GY   ++          A          + S    YL   A     + + 
Sbjct: 180 TVFVPNVYDFGYM-QREAAGEVPKSALATEVIYGNNHGKQSLDKTYLAA-ALGTGKVTIQ 237

Query: 654 KRSKVTKVII-NDQNVATGVEYVNSKGETV--RVTANKEVILTAGAIANAQLLLLSG 707
              +V  +    D   A  VE  ++ G+ +  +  + + + L AG++ + +LL+ + 
Sbjct: 238 TLHQVKTIRQTKDGGYALTVEQKDTDGKLLATKEISCRYLFLGAGSLGSTELLVRAR 294

>d1rp0a1 c.3.1.6 (A:7-284) Thiazole biosynthetic enzyme Thi4 {Thale cress(Arabidopsis thaliana) [TaxId: 3702]} Length = 278

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: Thi4-like
domain: Thiazole biosynthetic enzyme Thi4
species: Thale cress(Arabidopsis thaliana) [TaxId: 3702]

 Score = 53.0 bits (126), Expect = 4e-08
 Identities = 43/289 (14%), Positives = 94/289 (32%), Gaps = 31/289 (10%)

Query: 402 YDWQRLEK---ERYNIYRSVI--YPPDMTPYVKSGDCFDIIIVGASAAGCVLANRLSEVS 456
           YD         +   + R +   Y  DM  Y +     D+++VGA +AG   A  +S+  
Sbjct: 1   YDLNAFTFDPIKESIVSREMTRRYMTDMITYAE----TDVVVVGAGSAGLSAAYEISKNP 56

Query: 457 SLKVLLIEAGGDTPIHSRIPG-MSSVLSLSEFDHAYLAE---PSQFAGLGVRNARIKITA 512
           +++V +IE        + + G + S + + +  H +L E           V      +  
Sbjct: 57  NVQVAIIEQSVSPGGGAWLGGQLFSAMIVRKPAHLFLDEIGVAYDEQDTYVVVKHAALFT 116

Query: 513 GKGLGGSSAVQNILYQRGTSYDYENFAKLGYNG-WGYDETLKYFVKSEDYRSVIYNESKA 571
              +    A  N+      + +          G       +     ++        E+K 
Sbjct: 117 STIMSKLLARPNVKLFNAVAAEDLIVKGNRVGGVVTNWALVAQNHHTQSCMDPNVMEAKI 176

Query: 572 VHGTQG----YLPVGLFKNKENNIIREIFETSAQELGYPCPKDMNDRYVDVGFAEL-PGM 626
           V  + G    +   G+ + K   +I  +              +  +  +     E+ PGM
Sbjct: 177 VVSSCGHDGPFGATGVKRLKSIGMIDHVPGM------KALDMNTAEDAIVRLTREVVPGM 230

Query: 627 TRYGLRFSAADAY--LTPIAGKRTNLYVLKRSKVTKVIINDQNVATGVE 673
              G+  +  D    + P  G      ++   K  ++ +    +   ++
Sbjct: 231 IVTGMEVAEIDGAPRMGPTFGA----MMISGQKAGQLALKALGLPNAID 275

>d2i0za1 c.3.1.8 (A:1-192,A:362-420) Flavoprotein BC4706 {Bacillus cereus [TaxId: 1396]} Length = 251

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: HI0933 N-terminal domain-like
domain: Flavoprotein BC4706
species: Bacillus cereus [TaxId: 1396]

 Score = 48.5 bits (114), Expect = 8e-07
 Identities = 12/44 (27%), Positives = 21/44 (47%), Gaps = 1/44 (2%)

Query: 434 FDIIIVGASAAGCVLANRLSEVSSLKVLLIEAGGDTPIHSRIPG 477
           +D+I++G   +G + A   +E     VLL++ G        I G
Sbjct: 3   YDVIVIGGGPSGLMAAIGAAE-EGANVLLLDKGNKLGRKLAISG 45

>d2bcgg1 c.3.1.3 (G:5-301) Guanine nucleotide dissociation inhibitor, GDI {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 297

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: GDI-like N domain
domain: Guanine nucleotide dissociation inhibitor, GDI
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 48.3 bits (113), Expect = 2e-06
 Identities = 14/56 (25%), Positives = 26/56 (46%), Gaps = 7/56 (12%)

Query: 434 FDIIIVGASAAGCVLANRLSEVSSLKVLLIEAGGDTPIHSRIPGMSSVLSLSEFDH 489
           +D+I++G     C+L+  LS     KVL I+            G ++ ++LS+   
Sbjct: 6   YDVIVLGTGITECILSGLLSV-DGKKVLHIDK------QDHYGGEAASVTLSQLYE 54

>d1d5ta1 c.3.1.3 (A:-2-291,A:389-431) Guanine nucleotide dissociation inhibitor, GDI {Cow (Bos taurus) [TaxId: 9913]} Length = 336

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: GDI-like N domain
domain: Guanine nucleotide dissociation inhibitor, GDI
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 47.5 bits (111), Expect = 3e-06
 Identities = 17/128 (13%), Positives = 40/128 (31%), Gaps = 7/128 (5%)

Query: 434 FDIIIVGASAAGCVLANRLSEVSSLKVLLIEAGGDTPIHSRIPGMSSVLSLSEFDHAYLA 493
           +D+I++G     C+L+  +S  +  KVL ++       +    G SS ++  E  +    
Sbjct: 7   YDVIVLGTGLTECILSGIMSV-NGKKVLHMDR------NPYYGGESSSITPLEELYKRFQ 59

Query: 494 EPSQFAGLGVRNARIKITAGKGLGGSSAVQNILYQRGTSYDYENFAKLGYNGWGYDETLK 553
                     R     +        ++     +        Y +F  +  +       + 
Sbjct: 60  LLEGPPETMGRGRDWNVDLIPKFLMANGQLVKMLLYTEVTRYLDFKVVEGSFVYKGGKIY 119

Query: 554 YFVKSEDY 561
               +E  
Sbjct: 120 KVPSTETE 127

>d2ivda1 c.3.1.2 (A:10-306,A:415-464) Protoporphyrinogen oxidase {Myxococcus xanthus [TaxId: 34]} Length = 347

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Protoporphyrinogen oxidase
species: Myxococcus xanthus [TaxId: 34]

 Score = 47.1 bits (110), Expect = 5e-06
 Identities = 44/312 (14%), Positives = 89/312 (28%), Gaps = 36/312 (11%)

Query: 435 DIIIVGASAAGCVLANRLSEVSSLKVLLIEA----GG------------DTPIHSRIPGM 478
           ++ +VG   +G  +A+ L        +L+E+    GG            +   +S +   
Sbjct: 2   NVAVVGGGISGLAVAHHLRS-RGTDAVLLESSARLGGAVGTHALAGYLVEQGPNSFLDRE 60

Query: 479 SSVLSL-SEFDHAYLAEPSQFAGLGVRNARIKITAGKGLGGSSAVQNILYQRGTSYDYEN 537
            +  +L +  +       +  A                    + + + +   G       
Sbjct: 61  PATRALAAALNLEGRIRAADPAAKRRYVYTRGRLRSVPASPPAFLASDILPLGARLRVAG 120

Query: 538 FAKLGYNGWGYDETLKYFVKSEDYRSVIYNESKAV-HGTQGYLPVGLFKNKENNIIREIF 596
                    G DE+L  F +             AV  G        L       ++ ++ 
Sbjct: 121 ELFSRRAPEGVDESLAAFGRRHLGHRATQVLLDAVQTGIYAGDVEQLSVAATFPMLVKME 180

Query: 597 ETSAQELGYPCPKDMNDRYVDVGFAELPGMTRYGLRFSAADAYLTPIAGKRTNLYVLKR- 655
                 +          R   +     P ++  G   +        I     +L      
Sbjct: 181 REHRSLILGAIRAQKAQRQAALPAGTAPKLS--GALSTFDGGLQVLIDALAASLGDAAHV 238

Query: 656 -SKVTKVIINDQNVATGVEYVNSKGETVRVTANKEVILTAGAIANAQLL---------LL 705
            ++V  +   D         +   G    ++  + V+L A A A A+LL         L+
Sbjct: 239 GARVEGLAREDGGWRL---IIEEHGRRAELSVAQ-VVLAAPAHATAKLLRPLDDALAALV 294

Query: 706 SGIGPKAHLDEV 717
           +GI    HL+ V
Sbjct: 295 AGIYNLGHLERV 306

>d1y0pa2 c.3.1.4 (A:111-361,A:512-568) Flavocytochrome c3 (respiratory fumarate reductase) {Shewanella frigidimarina [TaxId: 56812]} Length = 308

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: Succinate dehydrogenase/fumarate reductase flavoprotein N-terminal domain
domain: Flavocytochrome c3 (respiratory fumarate reductase)
species: Shewanella frigidimarina [TaxId: 56812]

 Score = 45.0 bits (105), Expect = 2e-05
 Identities = 12/44 (27%), Positives = 23/44 (52%), Gaps = 1/44 (2%)

Query: 434 FDIIIVGASAAGCVLANRLSEVSSLKVLLIEAGGDTPIHSRIPG 477
            D+++VG+  AG   A   ++ S  KV+LIE       ++++  
Sbjct: 17  VDVVVVGSGGAGFSAAISATD-SGAKVILIEKEPVIGGNAKLAA 59

>d1qo8a2 c.3.1.4 (A:103-359,A:506-565) Flavocytochrome c3 (respiratory fumarate reductase) {Shewanella frigidimarina [TaxId: 56812]} Length = 317

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: Succinate dehydrogenase/fumarate reductase flavoprotein N-terminal domain
domain: Flavocytochrome c3 (respiratory fumarate reductase)
species: Shewanella frigidimarina [TaxId: 56812]

 Score = 43.8 bits (102), Expect = 4e-05
 Identities = 14/87 (16%), Positives = 34/87 (39%), Gaps = 9/87 (10%)

Query: 410 ERYNIYRSVIYPPDMTPYVKSGDCFDIIIVGASAAGCVLANRLSEVSSLKVLLIEAGGDT 469
           ++  I +++   P  T          +++VGA +AG   +    + +   V+L++    +
Sbjct: 4   DQDKIQKAIAAGPSET--------TQVLVVGAGSAGFNASLAAKK-AGANVILVDKAPFS 54

Query: 470 PIHSRIPGMSSVLSLSEFDHAYLAEPS 496
             +S I         ++   A+  E  
Sbjct: 55  GGNSMISAGGMNAVGTKQQTAHGVEDK 81

>d2gqfa1 c.3.1.8 (A:1-194,A:343-401) Hypothetical protein HI0933 {Haemophilus influenzae [TaxId: 727]} Length = 253

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: HI0933 N-terminal domain-like
domain: Hypothetical protein HI0933
species: Haemophilus influenzae [TaxId: 727]

 Score = 42.6 bits (99), Expect = 7e-05
 Identities = 12/45 (26%), Positives = 20/45 (44%), Gaps = 1/45 (2%)

Query: 434 FDIIIVGASAAGCVLANRLSEVSSLKVLLIEAGGDTPIHSRIPGM 478
            + II+GA AAG   A +L++     V + + G        + G 
Sbjct: 5   SENIIIGAGAAGLFCAAQLAK-LGKSVTVFDNGKKIGRKILMSGG 48

>d1d4ca2 c.3.1.4 (A:103-359,A:506-570) Flavocytochrome c3 (respiratory fumarate reductase) {Shewanella putrefaciens [TaxId: 24]} Length = 322

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: Succinate dehydrogenase/fumarate reductase flavoprotein N-terminal domain
domain: Flavocytochrome c3 (respiratory fumarate reductase)
species: Shewanella putrefaciens [TaxId: 24]

 Score = 43.0 bits (100), Expect = 7e-05
 Identities = 13/78 (16%), Positives = 31/78 (39%), Gaps = 14/78 (17%)

Query: 401 PYDWQRLEKERYNIYRSVIYPPDMTPYVKSGDCFDIIIVGASAAGCVLANRLSEVSSLKV 460
           P D  +  +++     ++      T         D++I+G+  AG   A    + +  KV
Sbjct: 4   PVDADKAAQDK-----AIAAGVKET--------TDVVIIGSGGAGLAAAVSARD-AGAKV 49

Query: 461 LLIEAGGDTPIHSRIPGM 478
           +L+E       ++++   
Sbjct: 50  ILLEKEPIPGGNTKLAAG 67

>d3c96a1 c.3.1.2 (A:4-182,A:294-402) Monooxygenase PhzS {Pseudomonas aeruginosa [TaxId: 287]} Length = 288

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Monooxygenase PhzS
species: Pseudomonas aeruginosa [TaxId: 287]

 Score = 42.0 bits (97), Expect = 1e-04
 Identities = 12/41 (29%), Positives = 17/41 (41%)

Query: 434 FDIIIVGASAAGCVLANRLSEVSSLKVLLIEAGGDTPIHSR 474
            DI+I GA   G   A  L +    KV L+E+  +      
Sbjct: 2   IDILIAGAGIGGLSCALALHQAGIGKVTLLESSSEIRPLGV 42

>d1onfa1 c.3.1.5 (A:1-153,A:271-376) Glutathione reductase {Plasmodium falciparum [TaxId: 5833]} Length = 259

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Glutathione reductase
species: Plasmodium falciparum [TaxId: 5833]

 Score = 42.0 bits (97), Expect = 1e-04
 Identities = 13/46 (28%), Positives = 22/46 (47%), Gaps = 4/46 (8%)

Query: 434 FDIIIVGASAAGCVLANRLSEVSSLKVLLIEA---GGDTPIHSRIP 476
           +D+I++G  + G   A R +   + KV L+E    GG       +P
Sbjct: 2   YDLIVIGGGSGGMAAARRAAR-HNAKVALVEKSRLGGTCVNVGCVP 46

>d1chua2 c.3.1.4 (A:2-237,A:354-422) L-aspartate oxidase {Escherichia coli [TaxId: 562]} Length = 305

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: Succinate dehydrogenase/fumarate reductase flavoprotein N-terminal domain
domain: L-aspartate oxidase
species: Escherichia coli [TaxId: 562]

 Score = 42.2 bits (98), Expect = 1e-04
 Identities = 20/86 (23%), Positives = 39/86 (45%), Gaps = 13/86 (15%)

Query: 422 PDMTPYVKSGDCFDIIIVGASAAGCVLANRLSEVSSLKVLLIEAGGDTPIHSRIP--GMS 479
           P+ +         D++I+G+ AAG  LA RL++    +V+++  G  T   +     G++
Sbjct: 4   PEHS--------CDVLIIGSGAAGLSLALRLAD--QHQVIVLSKGPVTEGSTFYAQGGIA 53

Query: 480 SVLSLSEFDHAYLAEPSQFAGLGVRN 505
           +V            E +  AG G+ +
Sbjct: 54  AVFD-ETDSIDSHVEDTLIAGAGICD 78

>d3lada1 c.3.1.5 (A:1-158,A:278-348) Dihydrolipoamide dehydrogenase {Azotobacter vinelandii [TaxId: 354]} Length = 229

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Azotobacter vinelandii [TaxId: 354]

 Score = 41.6 bits (96), Expect = 1e-04
 Identities = 27/153 (17%), Positives = 48/153 (31%), Gaps = 8/153 (5%)

Query: 434 FDIIIVGASAAGCVLANRLSEVSSLKVLLIEAG------GDTPIHSRIPGMSSVLSLSEF 487
           FD+I++GA   G V A + ++   LK  LIE                  G     +L + 
Sbjct: 4   FDVIVIGAGPGGYVAAIKSAQ-LGLKTALIEKYKGKEGKTALGGTCLNVGCIPSKALLDS 62

Query: 488 DHAYLAEPSQFAGLGVRNARIKITAGKGLGGSSAVQNILYQRGTSYDYENFAKLGYNGWG 547
            + +      F   G+    + I     +     +   L   G +   +      + G G
Sbjct: 63  SYKFHEAHESFKLHGISTGEVAIDVPTMIARKDQIVRNL-TGGVASLIKANGVTLFEGHG 121

Query: 548 YDETLKYFVKSEDYRSVIYNESKAVHGTQGYLP 580
                K    +    S    +++ V    G  P
Sbjct: 122 KLLAGKKVEVTAADGSSQVLDTENVILASGSKP 154

>d2gf3a1 c.3.1.2 (A:1-217,A:322-385) Sarcosine oxidase {Bacillus sp., strain b0618 [TaxId: 1409]} Length = 281

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Sarcosine oxidase
species: Bacillus sp., strain b0618 [TaxId: 1409]

 Score = 42.0 bits (97), Expect = 1e-04
 Identities = 13/58 (22%), Positives = 28/58 (48%), Gaps = 1/58 (1%)

Query: 434 FDIIIVGASAAGCVLANRLSEVSSLKVLLIEAGGDTPIHSRIPGMSSVLSLSEFDHAY 491
           FD+I+VGA + G     +L++   +K LL++A      +    G + ++  +  +   
Sbjct: 4   FDVIVVGAGSMGMAAGYQLAK-QGVKTLLVDAFDPPHTNGSHHGDTRIIRHAYGEGRE 60

>d1pn0a1 c.3.1.2 (A:1-240,A:342-461) Phenol hydroxylase {Soil-living yeast (Trichosporon cutaneum) [TaxId: 5554]} Length = 360

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Phenol hydroxylase
species: Soil-living yeast (Trichosporon cutaneum) [TaxId: 5554]

 Score = 41.6 bits (96), Expect = 2e-04
 Identities = 20/85 (23%), Positives = 33/85 (38%), Gaps = 5/85 (5%)

Query: 435 DIIIVGASAAGCVLANRLSEVSS----LKVLLIEAGGDTPIHSRIPGMSSVLSLSEFDHA 490
           D++IVGA  AG + A  LSE       LKV +I+       + +  G+    +L    + 
Sbjct: 9   DVLIVGAGPAGLMAARVLSEYVRQKPDLKVRIIDKRSTKVYNGQADGLQCR-TLESLKNL 67

Query: 491 YLAEPSQFAGLGVRNARIKITAGKG 515
            LA+        +    +      G
Sbjct: 68  GLADKILSEANDMSTIALYNPDENG 92

>d2bs2a2 c.3.1.4 (A:1-250,A:372-457) Fumarate reductase {Wolinella succinogenes [TaxId: 844]} Length = 336

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: Succinate dehydrogenase/fumarate reductase flavoprotein N-terminal domain
domain: Fumarate reductase
species: Wolinella succinogenes [TaxId: 844]

 Score = 41.7 bits (96), Expect = 2e-04
 Identities = 11/51 (21%), Positives = 19/51 (37%), Gaps = 3/51 (5%)

Query: 434 FDIIIVGASAAGCVLANRLSEVSSLKVLLIEAGGDTPIHSRIP--GMSSVL 482
            D +++G   AG   A    +   L  +++        HS     GM + L
Sbjct: 6   CDSLVIGGGLAGLRAAVATQQ-KGLSTIVLSLIPVKRSHSAAAQGGMQASL 55

>d1v59a1 c.3.1.5 (A:1-160,A:283-355) Dihydrolipoamide dehydrogenase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 233

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 40.6 bits (94), Expect = 3e-04
 Identities = 9/34 (26%), Positives = 16/34 (47%), Gaps = 1/34 (2%)

Query: 434 FDIIIVGASAAGCVLANRLSEVSSLKVLLIEAGG 467
            D++I+G   AG V A + ++        +E  G
Sbjct: 6   HDVVIIGGGPAGYVAAIKAAQ-LGFNTACVEKRG 38

>d1gesa1 c.3.1.5 (A:3-146,A:263-335) Glutathione reductase {Escherichia coli [TaxId: 562]} Length = 217

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Glutathione reductase
species: Escherichia coli [TaxId: 562]

 Score = 40.3 bits (93), Expect = 4e-04
 Identities = 14/60 (23%), Positives = 23/60 (38%), Gaps = 3/60 (5%)

Query: 434 FDIIIVGASAAGCVLANRLSEVSSLKVLLIEAG--GDTPIHSRIPGMSSVLSLSEFDHAY 491
           +D I +G  + G    NR +     K  LIEA   G T ++        +   ++   A 
Sbjct: 3   YDYIAIGGGSGGIASINRAAM-YGQKCALIEAKELGGTCVNVGCVPKKVMWHAAQIREAI 61

>d1dxla1 c.3.1.5 (A:4-152,A:276-347) Dihydrolipoamide dehydrogenase {Garden pea (Pisum sativum) [TaxId: 3888]} Length = 221

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Garden pea (Pisum sativum) [TaxId: 3888]

 Score = 40.2 bits (93), Expect = 4e-04
 Identities = 29/162 (17%), Positives = 51/162 (31%), Gaps = 10/162 (6%)

Query: 432 DCFDIIIVGASAAGCVLANRLSEVSSLKVLLIEA----GGDTPIHSRIPGMSSVLSLSEF 487
           D  D++I+G    G V A + ++    K   IE     GG       IP      +L   
Sbjct: 2   DENDVVIIGGGPGGYVAAIKAAQ-LGFKTTCIEKRGALGGTCLNVGCIPSK----ALLHS 56

Query: 488 DHAYLAEPSQFAGLGVRNARIKITAGKGLGGSSAVQNILYQRGTSYDYENFAKLGYNGWG 547
            H Y      FA  GV+ + ++I     +G      + L +       +N          
Sbjct: 57  SHMYHEAKHSFANHGVKVSNVEIDLAAMMGQKDKAVSNLTRGIEGLFKKNKVTYVKGYGK 116

Query: 548 YDETLKYFVKSEDYRSVIYNESKAVHGTQGYLPVGLFKNKEN 589
           +    +  V + +  + +      +  T G    G       
Sbjct: 117 FVSPSEISVDTIEGENTVVKGKHIIIAT-GSDVKGRTPFTSG 157

>d1neka2 c.3.1.4 (A:1-235,A:356-450) Succinate dehydogenase {Escherichia coli [TaxId: 562]} Length = 330

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: Succinate dehydrogenase/fumarate reductase flavoprotein N-terminal domain
domain: Succinate dehydogenase
species: Escherichia coli [TaxId: 562]

 Score = 40.6 bits (94), Expect = 4e-04
 Identities = 15/58 (25%), Positives = 27/58 (46%), Gaps = 3/58 (5%)

Query: 434 FDIIIVGASAAGCVLANRLSEVSSLKVLLIEAGGDTPIHSRIP--GMSSVLSLSEFDH 489
           FD +++GA  AG   A ++S+ S     L+     T  H+     G++  L  +  D+
Sbjct: 8   FDAVVIGAGGAGMRAALQISQ-SGQTCALLSKVFPTRSHTVSAQGGITVALGNTHEDN 64

>d1kf6a2 c.3.1.4 (A:0-225,A:358-442) Fumarate reductase {Escherichia coli [TaxId: 562]} Length = 311

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: Succinate dehydrogenase/fumarate reductase flavoprotein N-terminal domain
domain: Fumarate reductase
species: Escherichia coli [TaxId: 562]

 Score = 40.7 bits (94), Expect = 4e-04
 Identities = 14/53 (26%), Positives = 22/53 (41%), Gaps = 3/53 (5%)

Query: 434 FDIIIVGASAAGCVLANRLSEVSS-LKVLLIEAGGDTPIHSRIP--GMSSVLS 483
            D+ IVGA  AG   A   ++ +   K+ LI        H+     G ++V  
Sbjct: 6   ADLAIVGAGGAGLRAAIAAAQANPNAKIALISKVYPMRSHTVAAEGGSAAVAQ 58

>d1ryia1 c.3.1.2 (A:1-218,A:307-364) Glycine oxidase ThiO {Bacillus sp. [TaxId: 1409]} Length = 276

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Glycine oxidase ThiO
species: Bacillus sp. [TaxId: 1409]

 Score = 40.5 bits (93), Expect = 4e-04
 Identities = 7/33 (21%), Positives = 17/33 (51%), Gaps = 1/33 (3%)

Query: 434 FDIIIVGASAAGCVLANRLSEVSSLKVLLIEAG 466
           ++ +++G    G  +A  L++  +    L E+G
Sbjct: 5   YEAVVIGGGIIGSAIAYYLAK-ENKNTALFESG 36

>d3grsa1 c.3.1.5 (A:18-165,A:291-363) Glutathione reductase {Human (Homo sapiens) [TaxId: 9606]} Length = 221

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Glutathione reductase
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 39.9 bits (92), Expect = 5e-04
 Identities = 17/151 (11%), Positives = 41/151 (27%), Gaps = 8/151 (5%)

Query: 434 FDIIIVGASAAGCVLANRLSEVSSLKVLLIEAG--GDTPIHSRIPGMSSVLSLSEFDHAY 491
           +D +++G  + G   A R +E    +  ++E+   G T ++        + + +      
Sbjct: 4   YDYLVIGGGSGGLASARRAAE-LGARAAVVESHKLGGTCVNVGCVPKKVMWNTAVHSEFM 62

Query: 492 LAEPSQFAGLGVRNARIKITAGKGLGGSSAVQNILYQRGTSYDYENFAKLGYNGWGYDET 551
                  A  G  +   K           A  + L     +   ++  ++   G     +
Sbjct: 63  ----HDHADYGFPSCEGKFNWRVIKEKRDAYVSRLNAIYQNNLTKSHIEI-IRGHAAFTS 117

Query: 552 LKYFVKSEDYRSVIYNESKAVHGTQGYLPVG 582
                     +           G     P  
Sbjct: 118 DPKPTIEVSGKKYTAPHILIATGGMPSTPHE 148

>d1jnra2 c.3.1.4 (A:2-256,A:402-502) Adenylylsulfate reductase A subunit {Archaeon Archaeoglobus fulgidus [TaxId: 2234]} Length = 356

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: Succinate dehydrogenase/fumarate reductase flavoprotein N-terminal domain
domain: Adenylylsulfate reductase A subunit
species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]

 Score = 40.3 bits (93), Expect = 6e-04
 Identities = 14/49 (28%), Positives = 21/49 (42%), Gaps = 3/49 (6%)

Query: 434 FDIIIVGASAAGCVLANRLSEV---SSLKVLLIEAGGDTPIHSRIPGMS 479
            DI+I+G   +GC  A   +       LKV L+E        +   G+S
Sbjct: 22  TDILIIGGGFSGCGAAYEAAYWAKLGGLKVTLVEKAAVERSGAVAQGLS 70

>d1ojta1 c.3.1.5 (A:117-275,A:401-470) Dihydrolipoamide dehydrogenase {Neisseria meningitidis [TaxId: 487]} Length = 229

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Neisseria meningitidis [TaxId: 487]

 Score = 39.5 bits (91), Expect = 7e-04
 Identities = 20/119 (16%), Positives = 38/119 (31%), Gaps = 11/119 (9%)

Query: 434 FDIIIVGASAAGCVLANRLSEVSSLKVLLIEA----GGDTPIHSRIPGMSSVLSLSEFDH 489
           +D++++G    G   A   ++   LKV ++E     GG       IP  +        + 
Sbjct: 7   YDVVVLGGGPGGYSAAFAAAD-EGLKVAIVERYKTLGGVCLNVGCIPSKA-----LLHNA 60

Query: 490 AYLAEPSQFAGLGVRNARIKITAGKGLGGSSAVQNILYQRGTSYDYENFAKLGYNGWGY 548
           A + E    A  G++    ++           V + L              +   G G 
Sbjct: 61  AVIDEVRHLAANGIKYPEPELDIDMLRAYKDGVVSRLTGGLAGMAKSRKVDV-IQGDGQ 118

>d2gjca1 c.3.1.6 (A:16-326) Thiazole biosynthetic enzyme Thi4 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 311

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: Thi4-like
domain: Thiazole biosynthetic enzyme Thi4
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 39.9 bits (92), Expect = 8e-04
 Identities = 16/60 (26%), Positives = 29/60 (48%), Gaps = 7/60 (11%)

Query: 410 ERYNIYRSVI--YPPDMTPYVKSGDCFDIIIVGASAAGCVLANRLSEVS-SLKVLLIEAG 466
               + R++   Y  D+  +       D+IIVGA ++G   A  +++    LKV +IE+ 
Sbjct: 29  RESTVSRAMTSRYFKDLDKFAV----SDVIIVGAGSSGLSAAYVIAKNRPDLKVCIIESS 84

>d1i8ta1 c.4.1.3 (A:1-244,A:314-367) UDP-galactopyranose mutase, N-terminal domain {Escherichia coli [TaxId: 562]} Length = 298

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: UDP-galactopyranose mutase, N-terminal domain
domain: UDP-galactopyranose mutase, N-terminal domain
species: Escherichia coli [TaxId: 562]

 Score = 39.4 bits (91), Expect = 9e-04
 Identities = 15/32 (46%), Positives = 20/32 (62%), Gaps = 1/32 (3%)

Query: 434 FDIIIVGASAAGCVLANRLSEVSSLKVLLIEA 465
           +D IIVG+   G V AN L +  + KVL+IE 
Sbjct: 2   YDYIIVGSGLFGAVCANELKK-LNKKVLVIEK 32

>d1lvla1 c.3.1.5 (A:1-150,A:266-335) Dihydrolipoamide dehydrogenase {Pseudomonas putida [TaxId: 303]} Length = 220

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Pseudomonas putida [TaxId: 303]

 Score = 38.8 bits (89), Expect = 0.001
 Identities = 8/33 (24%), Positives = 16/33 (48%), Gaps = 1/33 (3%)

Query: 434 FDIIIVGASAAGCVLANRLSEVSSLKVLLIEAG 466
             ++I+G    G V A R  ++  +  +L+E  
Sbjct: 6   TTLLIIGGGPGGYVAAIRAGQL-GIPTVLVEGQ 37

>d1b5qa1 c.3.1.2 (A:5-293,A:406-463) Polyamine oxidase {Maize (Zea mays) [TaxId: 4577]} Length = 347

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Polyamine oxidase
species: Maize (Zea mays) [TaxId: 4577]

 Score = 39.5 bits (90), Expect = 0.001
 Identities = 15/37 (40%), Positives = 21/37 (56%), Gaps = 4/37 (10%)

Query: 435 DIIIVGASAAGCVLANRLSEVSSLKVLLIEA----GG 467
            +I+VGA  +G   A RLSE     +L++EA    GG
Sbjct: 2   RVIVVGAGMSGISAAKRLSEAGITDLLILEATDHIGG 38

>d2gmha1 c.3.1.2 (A:4-236,A:336-482) Electron transfer flavoprotein-ubiquinone oxidoreductase, EFT-QO {Pig (Sus scrofa) [TaxId: 9823]} Length = 380

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Electron transfer flavoprotein-ubiquinone oxidoreductase, EFT-QO
species: Pig (Sus scrofa) [TaxId: 9823]

 Score = 39.5 bits (91), Expect = 0.001
 Identities = 14/38 (36%), Positives = 22/38 (57%), Gaps = 5/38 (13%)

Query: 434 FDIIIVGASAAGCVLANRLSEVSS-----LKVLLIEAG 466
            D++IVGA  AG   A RL ++++     L+V L+E  
Sbjct: 33  ADVVIVGAGPAGLSAATRLKQLAAQHEKDLRVCLVEKA 70

>d2cula1 c.3.1.7 (A:2-231) GidA-related protein TTHA1897 {Thermus thermophilus [TaxId: 274]} Length = 230

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: GidA-like
domain: GidA-related protein TTHA1897
species: Thermus thermophilus [TaxId: 274]

 Score = 38.5 bits (89), Expect = 0.001
 Identities = 35/242 (14%), Positives = 63/242 (26%), Gaps = 55/242 (22%)

Query: 434 FDIIIVGASAAGCVLANRLSEVSSLKVLLIEAGGDTPIHSRIPGMSSVLSLSEFDHAYLA 493
           + ++IVGA  +G   A  L++   ++V L+    D         M  +            
Sbjct: 3   YQVLIVGAGFSGAETAFWLAQ-KGVRVGLLTQSLDA------VMMPFL------------ 43

Query: 494 EPSQFAGLGVRNARIKITAGKGLGGSSAVQNILYQRGTSYDYENFAKLGYNG-----WGY 548
                                   GS   +    +    + +   AK    G        
Sbjct: 44  ----------------PPKPPFPPGSLLERAYDPKDERVWAFHARAKYLLEGLRPLHLFQ 87

Query: 549 DETLKYFVKSEDYRSVIYNESKAVHGTQGYLPVGLFKNKENNIIREIFETSAQELGYPCP 608
                  ++      V   E     G +  L VG F      +   + E     L     
Sbjct: 88  ATATGLLLEGNRVVGVRTWEGPPARGEKVVLAVGSFLGARLFLGGVVEEAGR--LSEASY 145

Query: 609 KDMNDRYVDVGF---------AELPGMTRYGLRFSAADAYLTPIAGKRTNLYVLKRSKVT 659
            D+ +    +GF          E P    Y +R+ A      P   +     + +   + 
Sbjct: 146 PDLLEDLSRLGFRFVEREGEVPETPSTPGYRVRYLA----FHPEEWEEKTFRLKRLEGLY 201

Query: 660 KV 661
            V
Sbjct: 202 AV 203

>d1k0ia1 c.3.1.2 (A:1-173,A:276-394) p-Hydroxybenzoate hydroxylase, PHBH {Pseudomonas aeruginosa [TaxId: 287]} Length = 292

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: p-Hydroxybenzoate hydroxylase, PHBH
species: Pseudomonas aeruginosa [TaxId: 287]

 Score = 38.4 bits (88), Expect = 0.002
 Identities = 9/43 (20%), Positives = 20/43 (46%), Gaps = 1/43 (2%)

Query: 435 DIIIVGASAAGCVLANRLSEVSSLKVLLIEAGGDTPIHSRIPG 477
            + I+GA  +G +L   L + + +  +++E      +  RI  
Sbjct: 4   QVAIIGAGPSGLLLGQLLHK-AGIDNVILERQTPDYVLGRIRA 45

>d1h6va1 c.3.1.5 (A:10-170,A:293-366) Mammalian thioredoxin reductase {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 235

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Mammalian thioredoxin reductase
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 37.8 bits (86), Expect = 0.003
 Identities = 11/59 (18%), Positives = 27/59 (45%), Gaps = 1/59 (1%)

Query: 434 FDIIIVGASAAGCVLANRLSEVSSLKVLLIEAGGDTPIHSRIPGMSSVLSLSEFDHAYL 492
           FD+II+G  + G   A   ++    KV++++    TP+ +      + +++       +
Sbjct: 4   FDLIIIGGGSGGLAAAKEAAK-FDKKVMVLDFVTPTPLGTNWGLGGTCVNVGCIPKKLM 61

>d1pj5a2 c.3.1.2 (A:4-219,A:339-427) N,N-dimethylglycine oxidase {Arthrobacter globiformis [TaxId: 1665]} Length = 305

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: N,N-dimethylglycine oxidase
species: Arthrobacter globiformis [TaxId: 1665]

 Score = 37.8 bits (86), Expect = 0.003
 Identities = 9/32 (28%), Positives = 16/32 (50%)

Query: 435 DIIIVGASAAGCVLANRLSEVSSLKVLLIEAG 466
            I+I+GA   G  LA+ L       + +++ G
Sbjct: 3   RIVIIGAGIVGTNLADELVTRGWNNITVLDQG 34

>d1ebda1 c.3.1.5 (A:7-154,A:272-346) Dihydrolipoamide dehydrogenase {Bacillus stearothermophilus [TaxId: 1422]} Length = 223

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Bacillus stearothermophilus [TaxId: 1422]

 Score = 37.1 bits (85), Expect = 0.003
 Identities = 11/33 (33%), Positives = 18/33 (54%), Gaps = 1/33 (3%)

Query: 434 FDIIIVGASAAGCVLANRLSEVSSLKVLLIEAG 466
            + ++VGA   G V A R ++    KV ++E G
Sbjct: 4   TETLVVGAGPGGYVAAIRAAQ-LGQKVTIVEKG 35

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	720
d1gpea1	391	Glucose oxidase {Penicillium amagasakiense [TaxId:	100.0
d1cf3a1	385	Glucose oxidase {Aspergillus niger [TaxId: 5061]}	100.0
d1kdga1	360	Flavoprotein domain of flavocytochrome cellobiose	100.0
d1ju2a1	351	Hydroxynitrile lyase {Almond (Prunus dulcis) [TaxI	100.0
d3coxa1	370	Cholesterol oxidase of GMC family {Brevibacterium	99.94
d1n4wa1	367	Cholesterol oxidase of GMC family {Streptomyces sp	99.92
d2f5va1	379	Pyranose 2-oxidase {White-rot fungus (Peniophora s	99.86
d1y0pa2	308	Flavocytochrome c3 (respiratory fumarate reductase	99.76
d1pj5a2	305	N,N-dimethylglycine oxidase {Arthrobacter globifor	99.72
d2gf3a1	281	Sarcosine oxidase {Bacillus sp., strain b0618 [Tax	99.72
d1d4ca2	322	Flavocytochrome c3 (respiratory fumarate reductase	99.71
d1ryia1	276	Glycine oxidase ThiO {Bacillus sp. [TaxId: 1409]}	99.7
d1qo8a2	317	Flavocytochrome c3 (respiratory fumarate reductase	99.68
d1d5ta1	336	Guanine nucleotide dissociation inhibitor, GDI {Co	99.62
d2i0za1	251	Flavoprotein BC4706 {Bacillus cereus [TaxId: 1396]	99.61
d2bcgg1	297	Guanine nucleotide dissociation inhibitor, GDI {Ba	99.6
d1kf6a2	311	Fumarate reductase {Escherichia coli [TaxId: 562]}	99.56
d2bs2a2	336	Fumarate reductase {Wolinella succinogenes [TaxId:	99.55
d2ivda1	347	Protoporphyrinogen oxidase {Myxococcus xanthus [Ta	99.47
d1jnra2	356	Adenylylsulfate reductase A subunit {Archaeon Arch	99.45
d1chua2	305	L-aspartate oxidase {Escherichia coli [TaxId: 562]	99.44
d1neka2	330	Succinate dehydogenase {Escherichia coli [TaxId: 5	99.41
d2gqfa1	253	Hypothetical protein HI0933 {Haemophilus influenza	99.38
d2v5za1	383	Monoamine oxidase B {Human (Homo sapiens) [TaxId:	99.19
d2iida1	370	L-aminoacid oxidase {Malayan pit viper (Calloselas	99.16
d2cula1	230	GidA-related protein TTHA1897 {Thermus thermophilu	98.99
d1rp0a1	278	Thiazole biosynthetic enzyme Thi4 {Thale cress(Ara	98.94
d2gv8a1	335	Flavin-dependent monoxygenase SPBP16F5.08c {Schizo	98.85
d1w4xa1	298	Phenylacetone monooxygenase {Thermobifida fusca [T	98.83
d1k0ia1	292	p-Hydroxybenzoate hydroxylase, PHBH {Pseudomonas a	98.8
d2dw4a2	449	Lysine-specific histone demethylase 1, LSD1 {Human	98.76
d1b5qa1	347	Polyamine oxidase {Maize (Zea mays) [TaxId: 4577]}	98.71
d3c96a1	288	Monooxygenase PhzS {Pseudomonas aeruginosa [TaxId:	98.7
d2gmha1	380	Electron transfer flavoprotein-ubiquinone oxidored	98.59
d3lada1	229	Dihydrolipoamide dehydrogenase {Azotobacter vinela	98.59
d1dxla1	221	Dihydrolipoamide dehydrogenase {Garden pea (Pisum	98.58
d1i8ta1	298	UDP-galactopyranose mutase, N-terminal domain {Esc	98.57
d1seza1	373	Protoporphyrinogen oxidase {Tobacco (Nicotiana tab	98.56
d1v59a1	233	Dihydrolipoamide dehydrogenase {Baker's yeast (Sac	98.53
d1c0pa1	268	D-aminoacid oxidase, N-terminal domain {Rhodotorul	98.53
d1ojta1	229	Dihydrolipoamide dehydrogenase {Neisseria meningit	98.53
d1h6va1	235	Mammalian thioredoxin reductase {Rat (Rattus norve	98.52
d1gesa1	217	Glutathione reductase {Escherichia coli [TaxId: 56	98.45
d1ebda1	223	Dihydrolipoamide dehydrogenase {Bacillus stearothe	98.44
d3lada2	119	Dihydrolipoamide dehydrogenase {Azotobacter vinela	98.39
d3grsa1	221	Glutathione reductase {Human (Homo sapiens) [TaxId	98.36
d1fl2a1	184	Alkyl hydroperoxide reductase subunit F (AhpF), C-	98.36
d1lvla1	220	Dihydrolipoamide dehydrogenase {Pseudomonas putida	98.34
d1ebda2	117	Dihydrolipoamide dehydrogenase {Bacillus stearothe	98.34
d1mo9a2	121	NADH-dependent 2-ketopropyl coenzyme M oxidoreduct	98.32
d1gesa2	116	Glutathione reductase {Escherichia coli [TaxId: 56	98.31
d1q1ra2	133	Putidaredoxin reductase {Pseudomonas putida [TaxId	98.3
d1v59a2	122	Dihydrolipoamide dehydrogenase {Baker's yeast (Sac	98.3
d2bi7a1	314	UDP-galactopyranose mutase, N-terminal domain {Kle	98.26
d1pn0a1	360	Phenol hydroxylase {Soil-living yeast (Trichosporo	98.25
d1onfa1	259	Glutathione reductase {Plasmodium falciparum [TaxI	98.22
d1dxla2	123	Dihydrolipoamide dehydrogenase {Garden pea (Pisum	98.21
d2voua1	265	Dihydroxypyridine hydroxylase DhpH {Arthrobacter n	98.19
d1ojta2	125	Dihydrolipoamide dehydrogenase {Neisseria meningit	98.18
d1lvla2	115	Dihydrolipoamide dehydrogenase {Pseudomonas putida	98.17
d1trba1	190	Thioredoxin reductase {Escherichia coli [TaxId: 56	98.16
d1ps9a3	179	2,4-dienoyl-CoA reductase, middle domain {Escheric	98.13
d1gtea4	196	Dihydropyrimidine dehydrogenase, domain 2 {Pig (Su	98.11
d1mo9a1	261	NADH-dependent 2-ketopropyl coenzyme M oxidoreduct	98.09
d1vdca1	192	Thioredoxin reductase {Mouse-ear cress (Arabidopsi	98.09
d2gjca1	311	Thiazole biosynthetic enzyme Thi4 {Baker's yeast (	98.08
d1feca1	240	Trypanothione reductase {Crithidia fasciculata [Ta	98.08
d1aoga1	238	Trypanothione reductase {Trypanosoma cruzi [TaxId:	98.06
d3grsa2	125	Glutathione reductase {Human (Homo sapiens) [TaxId	98.0
d1djqa3	233	Trimethylamine dehydrogenase, middle domain {Methy	98.0
d1lqta2	239	Ferredoxin:NADP reductase FprA {Mycobacterium tube	97.96
d1feca2	117	Trypanothione reductase {Crithidia fasciculata [Ta	97.85
d1m6ia2	137	Apoptosis-inducing factor (AIF) {Human (Homo sapie	97.84
d1cjca2	230	Adrenodoxin reductase of mitochondrial p450 system	97.81
d1h6va2	122	Mammalian thioredoxin reductase {Rat (Rattus norve	97.78
d1kifa1	246	D-aminoacid oxidase, N-terminal domain {Pig (Sus s	97.77
d1aoga2	117	Trypanothione reductase {Trypanosoma cruzi [TaxId:	97.6
d1nhpa1	198	NADH peroxidase {Enterococcus faecalis [TaxId: 135	97.53
d1vg0a1	491	Rab escort protein 1 {Rat (Rattus norvegicus) [Tax	97.43
d1xdia1	233	Dihydrolipoamide dehydrogenase {Mycobacterium tube	97.38
d1xhca2	122	NADH oxidase /nitrite reductase {Pyrococcus furios	97.23
d1fl2a2	126	Alkyl hydroperoxide reductase subunit F (AhpF), C-	97.19
d1d7ya2	121	NADH-dependent ferredoxin reductase, BphA4 {Pseudo	97.18
d1nhpa2	123	NADH peroxidase {Enterococcus faecalis [TaxId: 135	97.16
d1onfa2	117	Glutathione reductase {Plasmodium falciparum [TaxI	97.14
d1fcda1	186	Flavocytochrome c sulfide dehydrogenase, FCSD, fla	97.09
d1q1ra1	185	Putidaredoxin reductase {Pseudomonas putida [TaxId	96.88
d1e5qa1	182	Saccharopine reductase {Rice blast fungus (Magnapo	96.82
d1ps9a2	162	2,4-dienoyl-CoA reductase, C-terminal domain {Esch	96.73
d1d7ya1	183	NADH-dependent ferredoxin reductase, BphA4 {Pseudo	96.47
d1trba2	126	Thioredoxin reductase {Escherichia coli [TaxId: 56	96.37
d1bg6a2	184	N-(1-D-carboxylethyl)-L-norvaline dehydrogenase {A	96.36
d1m6ia1	213	Apoptosis-inducing factor (AIF) {Human (Homo sapie	96.36
d1xhca1	167	NADH oxidase /nitrite reductase {Pyrococcus furios	96.33
d1vdca2	130	Thioredoxin reductase {Mouse-ear cress (Arabidopsi	96.32
d1ks9a2	167	Ketopantoate reductase PanE {Escherichia coli [Tax	96.24
d2jfga1	93	UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase	96.18
d1djqa2	156	Trimethylamine dehydrogenase, C-terminal domain {M	95.75
d1f0ya2	192	Short chain L-3-hydroxyacyl CoA dehydrogenase {Hum	95.5
d1lssa_	132	Ktn Mja218 {Archaeon Methanococcus jannaschii [Tax	95.43
d1wdka3	186	Fatty oxidation complex alpha subunit, middle doma	95.34
d1mv8a2	202	GDP-mannose 6-dehydrogenase {Pseudomonas aeruginos	95.32
d2hmva1	134	Ktn bsu222 {Bacillus subtilis [TaxId: 1423]}	94.97
d1jaya_	212	Coenzyme F420H2:NADP+ oxidoreductase (FNO) {Archae	94.42
d1n1ea2	189	Glycerol-3- phosphate dehydrogenase {Trypanosome (	94.26
d1pjca1	168	L-alanine dehydrogenase {Phormidium lapideum [TaxI	94.19
d1gtea3	153	Dihydropyrimidine dehydrogenase, domain 3 {Pig (Su	94.18
d1l7da1	183	Nicotinamide nucleotide transhydrogenase dI compon	93.99
d1txga2	180	Glycerol-3- phosphate dehydrogenase {Archaeoglobus	93.85
d2f1ka2	165	Prephenate dehydrogenase TyrA {Synechocystis sp. p	93.71
d1kyqa1	150	Bifunctional dehydrogenase/ferrochelatase Met8p, N	93.27
d2pv7a2	152	Prephenate dehydrogenase TyrA {Haemophilus influen	92.99
d2gv8a2	107	Flavin-dependent monoxygenase SPBP16F5.08c {Schizo	92.58
d1pjqa1	113	Siroheme synthase CysG, domain 1 {Salmonella typhi	92.42
d1dlja2	196	UDP-glucose dehydrogenase (UDPGDH) {Streptococcus	92.03
d1e3ja2	170	Ketose reductase (sorbitol dehydrogenase) {Silverl	91.34
d1nyta1	170	Shikimate 5-dehydrogenase AroE {Escherichia coli [	90.95
d1ez4a1	146	Lactate dehydrogenase {Lactobacillus pentosus [Tax	90.79
d2pgda2	176	6-phosphogluconate dehydrogenase {Sheep (Ovis orie	90.78
d1pl8a2	171	Ketose reductase (sorbitol dehydrogenase) {Human (	90.54
d1id1a_	153	Rck domain from putative potassium channel Kch {Es	89.92
d3cuma2	162	Hydroxyisobutyrate dehydrogenase {Pseudomonas aeru	89.78
d1djqa3	233	Trimethylamine dehydrogenase, middle domain {Methy	89.71
d1piwa2	168	Cinnamyl alcohol dehydrogenase, ADH6 {Baker's yeas	89.61
d1vpda2	161	Hydroxyisobutyrate dehydrogenase {Salmonella typhi	89.57
d1hyha1	146	L-2-hydroxyisocapronate dehydrogenase, L-HICDH {La	89.45
d1w4xa2	235	Phenylacetone monooxygenase {Thermobifida fusca [T	89.13
d1pzga1	154	Lactate dehydrogenase {Toxoplasma gondii [TaxId: 5	89.05
d1llua2	166	Alcohol dehydrogenase {Pseudomonas aeruginosa [Tax	88.89
d1ldna1	148	Lactate dehydrogenase {Bacillus stearothermophilus	88.82
d1uxja1	142	Malate dehydrogenase {Chloroflexus aurantiacus [Ta	88.56
d2g5ca2	171	Prephenate dehydrogenase TyrA {Aquifex aeolicus [T	88.47
d1pgja2	178	6-phosphogluconate dehydrogenase {Trypanosoma bruc	88.35
d1luaa1	191	Methylene-tetrahydromethanopterin dehydrogenase {M	88.29
d1llda1	143	Lactate dehydrogenase {Bifidobacterium longum, str	88.1
d1npya1	167	Shikimate 5-dehydrogenase-like protein HI0607 {Hae	87.97
d1i0za1	160	Lactate dehydrogenase {Human (Homo sapiens), heart	87.88
d1y6ja1	142	Lactate dehydrogenase {Clostridium thermocellum [T	87.57
d1qyca_	307	Phenylcoumaran benzylic ether reductase {Loblolly	86.67
d1vj0a2	182	Hypothetical protein TM0436 {Thermotoga maritima [	86.48
d1guza1	142	Malate dehydrogenase {Chlorobium vibrioforme [TaxI	86.47
d2ldxa1	159	Lactate dehydrogenase {Mouse (Mus musculus) [TaxId	86.25
d1i36a2	152	Conserved hypothetical protein MTH1747 {Archaeon M	85.65
d1rjwa2	168	Alcohol dehydrogenase {Bacillus stearothermophilus	85.65
d1d7ya2	121	NADH-dependent ferredoxin reductase, BphA4 {Pseudo	85.02
d1cdoa2	175	Alcohol dehydrogenase {Cod (Gadus callarias) [TaxI	84.88
d1qyda_	312	Pinoresinol-lariciresinol reductase {Giant arborvi	84.7
d1fjha_	257	3-alpha-hydroxysteroid dehydrogenase {Comamonas te	84.55
d1hyea1	145	MJ0490, lactate/malate dehydrogenase {Archaeon Met	84.45
d1jw9b_	247	Molybdenum cofactor biosynthesis protein MoeB {Esc	84.41
d1jqba2	174	Bacterial secondary alcohol dehydrogenase {Clostri	84.34
d1d1ta2	176	Alcohol dehydrogenase {Human (Homo sapiens), diffe	84.31
d1uufa2	168	Hypothetical protein YahK {Escherichia coli [TaxId	84.17
d1ojua1	142	Malate dehydrogenase {Archaeon Archaeoglobus fulgi	84.1
d1kola2	195	Formaldehyde dehydrogenase {Pseudomonas putida [Ta	83.7
d1p77a1	171	Shikimate 5-dehydrogenase AroE {Haemophilus influe	83.52
d1a5za1	140	Lactate dehydrogenase {Thermotoga maritima [TaxId:	83.27
d1mlda1	144	Malate dehydrogenase {Pig (Sus scrofa) [TaxId: 982	83.02
d1yqga2	152	Pyrroline-5-carboxylate reductase ProC {Neisseria	82.84
d1e3ia2	174	Alcohol dehydrogenase {Mouse (Mus musculus), class	82.46
d2jhfa2	176	Alcohol dehydrogenase {Horse (Equus caballus) [Tax	82.35
d1hdoa_	205	Biliverdin IX beta reductase {Human (Homo sapiens)	82.15
d1t2da1	150	Lactate dehydrogenase {Malaria parasite (Plasmodiu	82.01
d1uaya_	241	Type II 3-hydroxyacyl-CoA dehydrogenase {Thermus t	82.0
d1nvta1	177	Shikimate 5-dehydrogenase AroE {Archaeon Methanoco	81.86
d2pd4a1	274	Enoyl-ACP reductase {Helicobacter pylori [TaxId: 2	81.53
d1gpja2	159	Glutamyl tRNA-reductase middle domain {Archaeon Me	81.07
d1w6ua_	294	2,4-dienoyl-CoA reductase, mitochondrial (DECR) {H	80.77
d2ahra2	152	Pyrroline-5-carboxylate reductase ProC {Streptococ	80.54
d1vi2a1	182	Putative shikimate dehydrogenase YdiB {Escherichia	80.45
d1dhra_	236	Dihydropteridin reductase (pteridine reductase) {R	80.41

>d1gpea1 c.3.1.2 (A:1-328,A:525-587) Glucose oxidase {Penicillium amagasakiense [TaxId: 63559]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Glucose oxidase
species: Penicillium amagasakiense [TaxId: 63559]

Probab=100.00  E-value=4.7e-36  Score=323.27  Aligned_cols=280  Identities=30%  Similarity=0.455  Sum_probs=214.8

Q ss_pred             CcccEEEECCcHHHHHHHHHHHhcCC-CcEEEEccCCCCCCC---cccCCcccccccccccccccccccccccccccccc
Q psy14408        432 DCFDIIIVGASAAGCVLANRLSEVSS-LKVLLIEAGGDTPIH---SRIPGMSSVLSLSEFDHAYLAEPSQFAGLGVRNAR  507 (720)
Q Consensus       432 ~eyDVVIIGSGiAGLvAA~~LAea~G-~KVLVLEKG~~~~~s---s~~Pg~~~~~~~~~l~~~y~s~p~~~g~l~l~~~~  507 (720)
                      .+||+||||||.+|+++|.+|||+ | ++|||||||......   ...|..+...++...+|.|..+++      +.++.
T Consensus        23 ~tyD~IIVGsG~aG~vlA~rLae~-~~~~VLlLEaG~~~~~~~~~~~~p~~~~~~~~~~~dw~~~t~p~------~~~r~   95 (391)
T d1gpea1          23 KTYDYIIAGGGLTGLTVAAKLTEN-PKIKVLVIEKGFYESNDGAIIEDPNAYGQIFGTTVDQNYLTVPL------INNRT   95 (391)
T ss_dssp             CEEEEEEECCSHHHHHHHHHHHTS-TTCCEEEEESSCCCTTSCHHHHCGGGTTTTTTSTTBCCEECCCC------TTSCC
T ss_pred             CeeeEEEECcCHHHHHHHHHHHHC-CCCeEEEEcCCCCCCCCCceeeCHHHHHHhhCCCcccCceeeec------CCCcE
Confidence            469999999999999999999999 6 799999999765332   134555555666777888876653      45778


Q ss_pred             eeeccccccCCcccccchhhhcCCchhHHHHHHh-cCCCCChhHHHHHHHhhhhchhhhc-------cccccccCcCCcc
Q psy14408        508 IKITAGKGLGGSSAVQNILYQRGTSYDYENFAKL-GYNGWGYDETLKYFVKSEDYRSVIY-------NESKAVHGTQGYL  579 (720)
Q Consensus       508 i~~~~G~~lGGgStvN~~~~~r~s~~d~~eWae~-g~~dWsydellpyF~s~e~~~~~sl-------d~d~~v~~~~G~L  579 (720)
                      +.|.+|+++||++.+|++++.|....+++.|.+. +..+|.|++++++|+++|.+.....       +.+...++..|.+
T Consensus        96 ~~~~~G~~lGGsS~in~~~~~rg~~~d~~~w~~~~G~~gW~~~~l~pyf~k~E~~~~~~~~~~~~~~~~~~~~~g~~~~~  175 (391)
T d1gpea1          96 NNIKAGKGLGGSTLINGDSWTRPDKVQIDSWEKVFGMEGWNWDNMFEYMKKAEAARTPTAAQLAAGHSFNATCHGTNGTV  175 (391)
T ss_dssp             CEECCBCSTTGGGGTSCCEECCCCHHHHHHHHHTTCCTTCSHHHHHHHHHHTEEECCCCHHHHHHTCCCCGGGCCBSSSE
T ss_pred             eeeceeeccCcccceeeeEEeeccccccccccccCCCCccccchhHHHHHHhhhccCCcchhcccccCccccccCCCCcc
Confidence            8999999999999999999999999999999875 6688999999999999997653211       1223455566665


Q ss_pred             ccccccc-ccchHHHHHHHHHHHHcCCCCCCCCCCccccccccccC-CccccCcchhHHHHHHHHHHhcCCCeEEEcCeE
Q psy14408        580 PVGLFKN-KENNIIREIFETSAQELGYPCPKDMNDRYVDVGFAELP-GMTRYGLRFSAADAYLTPIAGKRTNLYVLKRSK  657 (720)
Q Consensus       580 ~va~~~~-~~~~~~~q~llea~rklG~~~~~d~ng~~~~~G~~~~~-~g~~~G~k~~aa~a~L~~Aa~e~aGVkIi~gt~  657 (720)
                      .+..... .......+.+.++++++|+....+.+.+. ..+.+.+. ..+..+.+......++..++ .+.|++|++++.
T Consensus       176 ~~~~~~~~~~~~p~~~~~~~a~~~~G~~~~~~~~~g~-~~~~~~~~~~~~~~~~r~s~a~~~~~p~~-~r~nl~i~t~a~  253 (391)
T d1gpea1         176 QSGARDNGQPWSPIMKALMNTVSALGVPVQQDFLCGH-PRGVSMIMNNLDENQVRVDAARAWLLPNY-QRSNLEILTGQM  253 (391)
T ss_dssp             EEBCCCCSSCBCTHHHHHHHHHHHTTCCBSCCTTSSC-CCEEECCEESBCTTCCBCCHHHHHTTTTT-TCTTEEEEESCE
T ss_pred             cccccccccccCHHHHHHHHHHHhcCCceeeccccCc-ccccccccceeeccccccchhhhccCccc-cchhhhhhccce
Confidence            5443211 00135677888999999998776666554 33333222 22233445666666776666 578999999999


Q ss_pred             EEEEEEc---cCCcEEEEEEEecCCcEEEEEcCcEEEEccCCcchHHHHHHcCCCCccccccCCCC
Q psy14408        658 VTKVIIN---DQNVATGVEYVNSKGETVRVTANKEVILTAGAIANAQLLLLSGIGPKAHLDEVKIP  720 (720)
Q Consensus       658 VtkIl~e---~gGrAtGV~v~dt~G~e~tIkAkK~VVVAAGa~~Sp~LLl~SGIgpk~~L~~~gip  720 (720)
                      |++|+++   ++.+|+||++.+.+|.+++|+|+|+||||||+++||+|||+||||++++|+++||+
T Consensus       254 V~rIl~~~~~~g~ra~GV~~~~~~g~~~~v~A~keVILaAGai~SP~LLl~SGIGp~~~L~~~gI~  319 (391)
T d1gpea1         254 VGKVLFKQTASGPQAVGVNFGTNKAVNFDVFAKHEVLLAAGSAISPLILEYSGIGLKSVLDQANVT  319 (391)
T ss_dssp             EEEEEEEEETTEEEEEEEEEEEETTEEEEEEEEEEEEECSCTTTHHHHHHHTTEECHHHHHHTTCC
T ss_pred             eeEEeeeCCCCCceEEeeEEecCCCeEEEEEeCCEEEEecchhcchHHHHhcCCCcHHHHHHCCCC
Confidence            9999987   12489999998767777889998889999999999999999999999999999996

>d1cf3a1 c.3.1.2 (A:3-324,A:521-583) Glucose oxidase {Aspergillus niger [TaxId: 5061]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Glucose oxidase
species: Aspergillus niger [TaxId: 5061]

Probab=100.00  E-value=1e-35  Score=319.07  Aligned_cols=280  Identities=29%  Similarity=0.414  Sum_probs=212.2

Q ss_pred             CcccEEEECCcHHHHHHHHHHHhcCCCcEEEEccCCCCCCC---cccCCcccccccccccccccccccccccccccccce
Q psy14408        432 DCFDIIIVGASAAGCVLANRLSEVSSLKVLLIEAGGDTPIH---SRIPGMSSVLSLSEFDHAYLAEPSQFAGLGVRNARI  508 (720)
Q Consensus       432 ~eyDVVIIGSGiAGLvAA~~LAea~G~KVLVLEKG~~~~~s---s~~Pg~~~~~~~~~l~~~y~s~p~~~g~l~l~~~~i  508 (720)
                      .+||+||||||.+|+++|.+|+|+++++|||||||......   ...+..+...++...+|.+...+.     .+.++.+
T Consensus        16 ~tyD~IIVGsG~aG~vlA~rLse~~~~~VLvLEaG~~~~~~~~~~~~~~~~~~~~~~~~dw~~~t~~~-----~~~~r~~   90 (385)
T d1cf3a1          16 RTVDYIIAGGGLTGLTTAARLTENPNISVLVIESGSYESDRGPIIEDLNAYGDIFGSSVDHAYETVEL-----ATNNQTA   90 (385)
T ss_dssp             CEEEEEEECCSHHHHHHHHHHTTSTTCCEEEEESSCCCTTSCHHHHBGGGTTTTTTSTTBCCEECCCC-----TTTSCCC
T ss_pred             CeEEEEEECcCHHHHHHHHHHHHCCCCeEEEECCCCCCCCCCccccCHhHHhhhcCCCCCcCccccCc-----CCCCcee
Confidence            46999999999999999999999845899999999755322   122333444556677788765432     3567788


Q ss_pred             eeccccccCCcccccchhhhcCCchhHHHHHHh-cCCCCChhHHHHHHHhhhhchhhhcc-------ccccccCcCCccc
Q psy14408        509 KITAGKGLGGSSAVQNILYQRGTSYDYENFAKL-GYNGWGYDETLKYFVKSEDYRSVIYN-------ESKAVHGTQGYLP  580 (720)
Q Consensus       509 ~~~~G~~lGGgStvN~~~~~r~s~~d~~eWae~-g~~dWsydellpyF~s~e~~~~~sld-------~d~~v~~~~G~L~  580 (720)
                      .|.+|+++||++.+|++.+.|....+++.|.+. +..+|.|+++++||+++|.+......       .+...++..+.+.
T Consensus        91 ~~~~G~~lGGsS~in~~~~~R~~~~d~d~w~~~~~~~gw~~~~l~Pyf~k~E~~~~~~~~~~~~~~~~~~~~~g~~~~~~  170 (385)
T d1cf3a1          91 LIRSGNGLGGSTLVNGGTWTRPHKAQVDSWETVFGNEGWNWDNVAAYSLQAERARAPNAKQIAAGHYFNASCHGVNGTVH  170 (385)
T ss_dssp             EECCBCSTTGGGGTSCCBCCCCCHHHHHHHHHTTCCTTCSHHHHHHHHHHHEEECCCCHHHHHHTCCCCGGGSCSSSSEE
T ss_pred             eecccccccccceeeeeeeeccChhhhcccccccCCCcCchhhhHHHHHHHHhhcCCCcccccccccccccccCCccccc
Confidence            999999999999999999999999999999987 56789999999999999976532211       1122333444443


Q ss_pred             ccccc---cccchHHHHHHHHHHHHcCCCCCCCCCCccccccccccCCccc-cCcchhHHHHHHHHHHhcCCCeEEEcCe
Q psy14408        581 VGLFK---NKENNIIREIFETSAQELGYPCPKDMNDRYVDVGFAELPGMTR-YGLRFSAADAYLTPIAGKRTNLYVLKRS  656 (720)
Q Consensus       581 va~~~---~~~~~~~~q~llea~rklG~~~~~d~ng~~~~~G~~~~~~g~~-~G~k~~aa~a~L~~Aa~e~aGVkIi~gt  656 (720)
                      +....   ..  ....+.+.++++++|++...+.++.. .++.+.+..... ...+..+...++..++ ++.+++|++++
T Consensus       171 ~~~~~~~~~~--~p~~~~~~~a~~~~G~~~~~d~n~~~-~~~~~~~~~~~~~~~~~~~s~~~~~~p~~-~~~nl~i~t~~  246 (385)
T d1cf3a1         171 AGPRDTGDDY--SPIVKALMSAVEDRGVPTKKDFGCGD-PHGVSMFPNTLHEDQVRSDAAREWLLPNY-QRPNLQVLTGQ  246 (385)
T ss_dssp             EBCCCCSSCB--CTHHHHHHHHHHTTTCCBCCCTTSSC-CCEEECCCBSBCTTCBBCCHHHHHTGGGT-TCTTEEEEESC
T ss_pred             cccccccccc--CHHHHHHHHHHHHcCCCCcCCccccc-ccccccccccccccccchhhhhhhcCchh-cCCcccccCCc
Confidence            32211   11  34677888999999998877777665 444443333222 2333445556776666 67899999999


Q ss_pred             EEEEEEEccC---CcEEEEEEEecCCcEEEEEcCcEEEEccCCcchHHHHHHcCCCCccccccCCCC
Q psy14408        657 KVTKVIINDQ---NVATGVEYVNSKGETVRVTANKEVILTAGAIANAQLLLLSGIGPKAHLDEVKIP  720 (720)
Q Consensus       657 ~VtkIl~e~g---GrAtGV~v~dt~G~e~tIkAkK~VVVAAGa~~Sp~LLl~SGIgpk~~L~~~gip  720 (720)
                      .|++|+++++   .+|+||++.+.+|++++|+|+|+||||||+++||+||++||||++++|+++|||
T Consensus       247 ~V~rI~~~~~~~~~ra~GV~~~~~~g~~~~v~A~keVILsAGAi~SP~LLl~SGIGp~~~L~~~gI~  313 (385)
T d1cf3a1         247 YVGKVLLSQNGTTPRAVGVEFGTHKGNTHNVYAKHEVLLAAGSAVSPTILEYSGIGMKSILEPLGID  313 (385)
T ss_dssp             EEEEEEEECSSSSCEEEEEEEEEETTEEEEEEEEEEEEECSCTTTHHHHHHHTTBSCHHHHGGGTCC
T ss_pred             eEEEEEEcCCCceeEEEEEEEEcCCCCEEEEEeCCEEEEcCchhhCHHHHHhcCCCcHHHHHHCCCC
Confidence            9999999822   289999998767888999998789999999999999999999999999999996

>d1kdga1 c.3.1.2 (A:215-512,A:694-755) Flavoprotein domain of flavocytochrome cellobiose dehydrogenase (CDH), FAD-binding domain {Fungus (Phanerochaete chrysosporium) [TaxId: 5306]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Flavoprotein domain of flavocytochrome cellobiose dehydrogenase (CDH), FAD-binding domain
species: Fungus (Phanerochaete chrysosporium) [TaxId: 5306]

Probab=100.00  E-value=1.5e-33  Score=300.00  Aligned_cols=263  Identities=24%  Similarity=0.272  Sum_probs=190.2

Q ss_pred             cccEEEECCcHHHHHHHHHHHhcCCCcEEEEccCCCCCCCcccCCccccccc-----c---ccccccccccccccccccc
Q psy14408        433 CFDIIIVGASAAGCVLANRLSEVSSLKVLLIEAGGDTPIHSRIPGMSSVLSL-----S---EFDHAYLAEPSQFAGLGVR  504 (720)
Q Consensus       433 eyDVVIIGSGiAGLvAA~~LAea~G~KVLVLEKG~~~~~ss~~Pg~~~~~~~-----~---~l~~~y~s~p~~~g~l~l~  504 (720)
                      .|||||||||.+|+++|.+||++ |++|||||||..............+...     .   ...|.+....+.    ...
T Consensus         2 ~YD~IIVGsG~aG~v~A~rLae~-g~~VlvLEaG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~   76 (360)
T d1kdga1           2 PYDYIIVGAGPGGIIAADRLSEA-GKKVLLLERGGPSTKQTGGTYVAPWATSSGLTKFDIPGLFESLFTDSNP----FWW   76 (360)
T ss_dssp             CEEEEEECCSHHHHHHHHHHHHT-TCCEEEECSSCCCSGGGTCCCCCGGGGGGTCCTTTCGGGGGGGGTCSCC----TTB
T ss_pred             cCCEEEECcCHHHHHHHHHHhhC-CCeEEEEEccCCCCcccccccccchhhccCcccccCcccccccccCCCc----ccC
Confidence            68999999999999999999999 9999999999644221111000000000     0   111222222211    145


Q ss_pred             ccceeeccccccCCcccccchhhhcCCchhHHHHHHhcCCCCChhHHHHHHHhhhhchhhhccccccccCcCCccccccc
Q psy14408        505 NARIKITAGKGLGGSSAVQNILYQRGTSYDYENFAKLGYNGWGYDETLKYFVKSEDYRSVIYNESKAVHGTQGYLPVGLF  584 (720)
Q Consensus       505 ~~~i~~~~G~~lGGgStvN~~~~~r~s~~d~~eWae~g~~dWsydellpyF~s~e~~~~~sld~d~~v~~~~G~L~va~~  584 (720)
                      ++.+.+.+|+++||++.+|++++.|....+++.|..   ..|.|+++++||+++|......     ..+...|.+.+   
T Consensus        77 ~~~~~~~~G~~lGGsS~in~~~~~r~~~~D~~~~~g---wp~~~~~l~py~~~~e~~~~~~-----~~~~~~g~~~~---  145 (360)
T d1kdga1          77 CKDITVFAGCLVGGGTSVNGALYWYPNDGDFSSSVG---WPSSWTNHAPYTSKLSSRLPST-----DHPSTDGQRYL---  145 (360)
T ss_dssp             CTTBSSCCBCSTTGGGGTSCCBCCCCCGGGGCGGGT---CCGGGSCCHHHHHHHHHHSCCB-----SCCSTTSCCCS---
T ss_pred             Cccccccceeeecchhccccccccccchhhheeccc---ccccccchhhhhhhhhcccccc-----ceecCCCcccc---
Confidence            567889999999999999999999999988877742   2348899999999998766421     12333333221   


Q ss_pred             ccccchHHHHHHHHHHHHcCCCCC--CCCCCccccccccccCCccccCcchhHHHHHHHHHHhcCCCeEEEcCeEEEEEE
Q psy14408        585 KNKENNIIREIFETSAQELGYPCP--KDMNDRYVDVGFAELPGMTRYGLRFSAADAYLTPIAGKRTNLYVLKRSKVTKVI  662 (720)
Q Consensus       585 ~~~~~~~~~q~llea~rklG~~~~--~d~ng~~~~~G~~~~~~g~~~G~k~~aa~a~L~~Aa~e~aGVkIi~gt~VtkIl  662 (720)
                           ......+.+.++..|+...  .+.+... ..+++.+...|..|.|+.+..+||..++ ++.+++|++++.|++|+
T Consensus       146 -----~~~~~~~~~~~~~~g~~~~~~~~~~~~~-~~~~g~~~~~~~~G~R~s~~~~yl~~a~-~r~nl~i~t~~~V~rI~  218 (360)
T d1kdga1         146 -----EQSFNVVSQLLKGQGYNQATINDNPNYK-DHVFGYSAFDFLNGKRAGPVATYLQTAL-ARPNFTFKTNVMVSNVV  218 (360)
T ss_dssp             -----CHHHHHHHHHHHTTTCEECCGGGSTTCC-TTEEEECCBCEETTEECHHHHTHHHHHH-TCTTEEEECSCCEEEEE
T ss_pred             -----cchhHHHHHHHHHhhccCCCcccCCCcc-ccccceeeeeccccccccccchhhhhhh-cccccccccCcEEEEEE
Confidence                 1233445556666666433  1222333 4455666777888999999999999988 66789999999999999


Q ss_pred             EccCCcEEEEEEEec---CCcEEEEEcCcEEEEccCCcchHHHHHHcCCCCccccccCCC
Q psy14408        663 INDQNVATGVEYVNS---KGETVRVTANKEVILTAGAIANAQLLLLSGIGPKAHLDEVKI  719 (720)
Q Consensus       663 ~e~gGrAtGV~v~dt---~G~e~tIkAkK~VVVAAGa~~Sp~LLl~SGIgpk~~L~~~gi  719 (720)
                      ++ +++|+||++.+.   .++..++.|+|+||||||+++|++|||+||||++++|+++||
T Consensus       219 ~d-~~ra~GV~~~~~~~~~~~~~~v~a~~eVILsAGai~SP~LLl~SGIGp~~~L~~~gi  277 (360)
T d1kdga1         219 RN-GSQILGVQTNDPTLGPNGFIPVTPKGRVILSAGAFGTSRILFQSGIGPTDMIQTVQS  277 (360)
T ss_dssp             EE-TTEEEEEEESCTTSSGGGEEEEEEEEEEEECSHHHHHHHHHHHTTBSCHHHHHHHHT
T ss_pred             Ee-CCEEEEEEEEecccCcceEEEEEECCEEEEechhHhChHHHHhcCCCchhhhHHhhc
Confidence            99 899999999864   355678888888999999999999999999999999999886

>d1ju2a1 c.3.1.2 (A:1-293,A:464-521) Hydroxynitrile lyase {Almond (Prunus dulcis) [TaxId: 3755]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Hydroxynitrile lyase
species: Almond (Prunus dulcis) [TaxId: 3755]

Probab=100.00  E-value=6.1e-34  Score=302.55  Aligned_cols=273  Identities=26%  Similarity=0.303  Sum_probs=188.6

Q ss_pred             cccccccccCCCCCCCCcccCCCcccEEEECCcHHHHHHHHHHHhcCCCcEEEEccCCCCCCCcccCCcccccccccccc
Q psy14408        410 ERYNIYRSVIYPPDMTPYVKSGDCFDIIIVGASAAGCVLANRLSEVSSLKVLLIEAGGDTPIHSRIPGMSSVLSLSEFDH  489 (720)
Q Consensus       410 ~~y~flq~~~~P~~~~~~I~~d~eyDVVIIGSGiAGLvAA~~LAea~G~KVLVLEKG~~~~~ss~~Pg~~~~~~~~~l~~  489 (720)
                      .+|+++++..    +...++.+.+||+||||||.+|+++|.+||++  +||||||||........+.............|
T Consensus         7 ~~~~~~~~~~----~~~~~~~~~~YD~IIVGsG~aG~vlA~rLae~--~kVLvLEaG~~~~~~~~~~~~~~~~~~~~~~~   80 (351)
T d1ju2a1           7 HDFSYLSFAY----DATDLELEGSYDYVIVGGGTSGCPLAATLSEK--YKVLVLERGSLPTAYPNVLTADGFVYNLQQED   80 (351)
T ss_dssp             CCCGGGGGEE----EGGGSCSEEEEEEEEECCSTTHHHHHHHHTTT--SCEEEECSSBCGGGSGGGGBGGGHHHHHHSCC
T ss_pred             cCcceEeecc----CCCCccccCCccEEEECccHHHHHHHHHhcCC--CCEEEEecCCCCcCccccccchhhhccCcCCC
Confidence            5677777621    11223455679999999999999999999986  89999999965322211111111111111122


Q ss_pred             cccccccccccccccccceeeccccccCCcccccchhhhcCCchhHHHHHHhcCCCCChhHHHHHHHhhhhchhhhcccc
Q psy14408        490 AYLAEPSQFAGLGVRNARIKITAGKGLGGSSAVQNILYQRGTSYDYENFAKLGYNGWGYDETLKYFVKSEDYRSVIYNES  569 (720)
Q Consensus       490 ~y~s~p~~~g~l~l~~~~i~~~~G~~lGGgStvN~~~~~r~s~~d~~eWae~g~~dWsydellpyF~s~e~~~~~sld~d  569 (720)
                      ......+.    .+.++.+.+.+|+++||++.+|++++.|..+.+++.|.    .+|.|+++.++|++++......    
T Consensus        81 ~~~~~~~~----~~~~~~~~~~rG~~lGGsS~in~~~~~R~~~~dfd~~~----~~W~~~~~~p~~~~~e~~~~~~----  148 (351)
T d1ju2a1          81 DGKTPVER----FVSEDGIDNVRGRVLGGTSIINAGVYARANTSIYSASG----VDWDMDLVNQTYEWVEDTIVYK----  148 (351)
T ss_dssp             CSSSSEEE----EECTTSCEEEEECBTTGGGGTSCCEECBCCTTSSTTSS----SCCCHHHHHHHHHHHHHHHCBC----
T ss_pred             CCCCcccc----ccCCCceeeeeeeecccccccceeeeccCCHHHHhhcc----cccChhHhCcceeecccccccc----
Confidence            22222111    24567789999999999999999999999999888774    4899999999999987544210    


Q ss_pred             ccccCcCCcccccccccccchHHHHHHHHHHHHcCCCCCCCCCCccccccccccCCccccCcchhHHHHHHHHHHhcCCC
Q psy14408        570 KAVHGTQGYLPVGLFKNKENNIIREIFETSAQELGYPCPKDMNDRYVDVGFAELPGMTRYGLRFSAADAYLTPIAGKRTN  649 (720)
Q Consensus       570 ~~v~~~~G~L~va~~~~~~~~~~~q~llea~rklG~~~~~d~ng~~~~~G~~~~~~g~~~G~k~~aa~a~L~~Aa~e~aG  649 (720)
                                    ...   ......+.+++.+.|++...+++... ..+...+...+..+.++.....+|..+.  +.|
T Consensus       149 --------------~~~---~~~~~~~~~a~~~~g~~~~~~~~~~~-~~~~~~~~~~~~~~~~~s~~~~~l~~a~--~~n  208 (351)
T d1ju2a1         149 --------------PNS---QSWQSVTKTAFLEAGVHPNHGFSLDH-EEGTRITGSTFDNKGTRHAADELLNKGN--SNN  208 (351)
T ss_dssp             --------------CCC---CHHHHHHHHHHHHTTCCCEEEECCBC-CSEEEECEESBCTTSBBCCGGGGGGGSC--TTT
T ss_pred             --------------ccc---ccccccccchhhhhcccccccccccc-ccccccccccccCCCcccccchhhccch--hhh
Confidence                          000   12334455667778877654444333 2233333333444445555556776654  789


Q ss_pred             eEEEcCeEEEEEEEc--cCCcEEEEEEEecCCc--EEEEEcCcEEEEccCCcchHHHHHHcCCCCccccccCCCC
Q psy14408        650 LYVLKRSKVTKVIIN--DQNVATGVEYVNSKGE--TVRVTANKEVILTAGAIANAQLLLLSGIGPKAHLDEVKIP  720 (720)
Q Consensus       650 VkIi~gt~VtkIl~e--~gGrAtGV~v~dt~G~--e~tIkAkK~VVVAAGa~~Sp~LLl~SGIgpk~~L~~~gip  720 (720)
                      ++|++++.|++|+++  .+.+|+||++.+.+|.  +..++|+|+||||||+++||+|||+|||||+++|+++|||
T Consensus       209 l~i~~~~~V~rv~~~~~~g~~a~gV~~~~~~g~~~~~~v~a~~eVILsAGaI~TP~LLl~SGIGp~~~L~~~gI~  283 (351)
T d1ju2a1         209 LRVGVHASVEKIIFSNAPGLTATGVIYRDSNGTPHQAFVRSKGEVIVSAGTIGTPQLLLLSGVGPESYLSSLNIP  283 (351)
T ss_dssp             EEEEESCEEEEEEECCSSSCBEEEEEEECTTSCEEEEEEEEEEEEEECCHHHHHHHHHHHTTEECHHHHHHTTCC
T ss_pred             hhhhccchhhceeeeccccceeeEEEEEeCCCceEEEEeecCcEEEEeCccccCHHHHHHcCCCCHHHHHHcCCC
Confidence            999999999999997  2348999999886553  3457887789999999999999999999999999999996

>d3coxa1 c.3.1.2 (A:5-318,A:451-506) Cholesterol oxidase of GMC family {Brevibacterium sterolicum [TaxId: 1702]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Cholesterol oxidase of GMC family
species: Brevibacterium sterolicum [TaxId: 1702]

Probab=99.94  E-value=1.7e-26  Score=242.94  Aligned_cols=258  Identities=19%  Similarity=0.164  Sum_probs=168.0

Q ss_pred             CCCcccEEEECCcHHHHHHHHHHHhcCCCcEEEEccCCCCCCCcccCCccccccc--c-----------------ccccc
Q psy14408        430 SGDCFDIIIVGASAAGCVLANRLSEVSSLKVLLIEAGGDTPIHSRIPGMSSVLSL--S-----------------EFDHA  490 (720)
Q Consensus       430 ~d~eyDVVIIGSGiAGLvAA~~LAea~G~KVLVLEKG~~~~~ss~~Pg~~~~~~~--~-----------------~l~~~  490 (720)
                      ..+.+||||||||.+|+++|.+||++ |+||||||||..................  .                 ...+.
T Consensus         4 ~~~~~dvIVVGsG~aG~v~A~rLaea-G~~VlvLEaG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   82 (370)
T d3coxa1           4 DGDRVPALVIGSGYGGAVAALRLTQA-GIPTQIVEMGRSWDTPGSDGKIFCGMLNPDKRSMWLADKTDQPVSNFMGFGIN   82 (370)
T ss_dssp             TTCEEEEEEECCSHHHHHHHHHHHHT-TCCEEEECSSCCSCSCCTTSCSSCCSSSCCTTSBBSCSBCCCSSCSBTTBSCC
T ss_pred             CCCCCCEEEECcCHHHHHHHHHHHHC-CCeEEEEeCCCCCCCcccccccccccccccccccccccccccccccccccccC
Confidence            44679999999999999999999999 9999999998654221111100000000  0                 01111


Q ss_pred             ccccccccccccccccceeeccccccCCcccccchhhhcCCchhHHHHHHhcCCCCChhHHHHHHHhhhhchhhhccccc
Q psy14408        491 YLAEPSQFAGLGVRNARIKITAGKGLGGSSAVQNILYQRGTSYDYENFAKLGYNGWGYDETLKYFVKSEDYRSVIYNESK  570 (720)
Q Consensus       491 y~s~p~~~g~l~l~~~~i~~~~G~~lGGgStvN~~~~~r~s~~d~~eWae~g~~dWsydellpyF~s~e~~~~~sld~d~  570 (720)
                      +................+.+.+|+++||++.+|++++.+....+++.|...+   +.++++.++|.++++..+....   
T Consensus        83 ~~~~~~~~~~~~~~~~~~~~~~g~~vGG~S~~~~~~~~r~~~~df~~~~~~~---~~~~~~~~~y~~~e~~lgv~~~---  156 (370)
T d3coxa1          83 KSIDRYVGVLDSERFSGIKVYQGRGVGGGSLVNGGMAVTPKRNYFEEILPSV---DSNEMYNKYFPRANTGLGVNNI---  156 (370)
T ss_dssp             CBCCCCBCSEEEEECSSCEEEEECSTTGGGGTSCCBCCCCCHHHHHHHCTTS---CHHHHHHTHHHHHHHHHTCBCC---
T ss_pred             cccccccccccccCCCcceeeeeccccccccccCceeccCCHHHhhcccccC---CcHHHHHHHHHHHHHhcCCccc---
Confidence            1111111112223446678889999999999999999999999999886532   2367788999999877643200   


Q ss_pred             cccCcCCcccccccccccchHHHHHHHHHHHHcCCCCCC-----CC-------CCccccccccccCCccccCcchhHHHH
Q psy14408        571 AVHGTQGYLPVGLFKNKENNIIREIFETSAQELGYPCPK-----DM-------NDRYVDVGFAELPGMTRYGLRFSAADA  638 (720)
Q Consensus       571 ~v~~~~G~L~va~~~~~~~~~~~q~llea~rklG~~~~~-----d~-------ng~~~~~G~~~~~~g~~~G~k~~aa~a  638 (720)
                           .  .........  ....+.+.+.+++.|+....     ++       .+...++.++.+..+|..+.+..+...
T Consensus       157 -----~--~~~~~~~~~--~~~~~~~~~~a~~~g~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~s~~~~  227 (370)
T d3coxa1         157 -----D--QAWFESTEW--YKFARTGRKTAQRSGFTTAFVPNVYDFEYMKKEAAGQVTKSGLGGEVIYGNNAGKKSLDKT  227 (370)
T ss_dssp             -----C--HHHHHHCGG--GHHHHHHHHHHHHTTCCEEECCBSBCHHHHHHHHTTSSCCSTTTTCSTTCCSSSBCCGGGT
T ss_pred             -----c--CCcccCCCC--ccHHHHHHHHHHHcCCccccccccccccccccccccccccceecccccccccccccChHHH
Confidence                 0  000011111  24556677777787775431     10       011112333333445556677778888


Q ss_pred             HHHHHHhcCCCeEEEcCeEEEEEEEccCCcEEEEEEEec--CC---cEEEEEcCcEEEEccCCcchHHHHHHc
Q psy14408        639 YLTPIAGKRTNLYVLKRSKVTKVIINDQNVATGVEYVNS--KG---ETVRVTANKEVILTAGAIANAQLLLLS  706 (720)
Q Consensus       639 ~L~~Aa~e~aGVkIi~gt~VtkIl~e~gGrAtGV~v~dt--~G---~e~tIkAkK~VVVAAGa~~Sp~LLl~S  706 (720)
                      +|..|+ ++.+++|+++++|++|+++ ++++.+|.+...  .|   .+++|+|+ +||||||+++|++|||+|
T Consensus       228 ~L~~a~-~~g~~~i~t~~~V~~I~~~-~~~~~~V~v~~~~~~~~~~~~~~~~A~-~VILaAGai~Tp~LLL~S  297 (370)
T d3coxa1         228 YLAQAA-ATGKLTITTLHRVTKVAPA-TGSGYSVTMEQIDEQGNVVATKVVTAD-RVFFAAGSVGTSKLLVSM  297 (370)
T ss_dssp             HHHHHH-HTTCEEEECSEEEEEEEEC-SSSSEEEEEEEECTTSCEEEEEEEEEE-EEEECSHHHHHHHHHHHH
T ss_pred             HHHHHH-hCCCcEEEecCcEEEEEEc-CCCeEEEEEEEeCCccceeeEEEEECC-EEEEeeCHHHhHHHHHhC
Confidence            999888 5666999999999999998 666666666533  33   34579997 699999999999999999

>d1n4wa1 c.3.1.2 (A:9-318,A:451-507) Cholesterol oxidase of GMC family {Streptomyces sp. [TaxId: 1931]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Cholesterol oxidase of GMC family
species: Streptomyces sp. [TaxId: 1931]

Probab=99.92  E-value=1.9e-25  Score=234.33  Aligned_cols=255  Identities=15%  Similarity=0.085  Sum_probs=162.1

Q ss_pred             ccEEEECCcHHHHHHHHHHHhcCCCcEEEEccCCCCCCCcccCCcc-cc-cccccccccccccc----------------
Q psy14408        434 FDIIIVGASAAGCVLANRLSEVSSLKVLLIEAGGDTPIHSRIPGMS-SV-LSLSEFDHAYLAEP----------------  495 (720)
Q Consensus       434 yDVVIIGSGiAGLvAA~~LAea~G~KVLVLEKG~~~~~ss~~Pg~~-~~-~~~~~l~~~y~s~p----------------  495 (720)
                      +||||||||.+|+++|.+||++ |+||||||||............. .. .......|......                
T Consensus         3 v~VIVVGsG~aG~v~A~rLaea-G~~VlvLEaG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   81 (367)
T d1n4wa1           3 VPAVVIGTGYGAAVSALRLGEA-GVQTLMLEMGQLWNQPGPDGNIFCGMLNPDKRSSWFKNRTEAPLGSFLWLDVVNRNI   81 (367)
T ss_dssp             EEEEEECCSHHHHHHHHHHHHT-TCCEEEEESSCCCCCCCTTSSSSCCTTSCCGGGSBSCSBCCCCTTCHHHHGGGCCBC
T ss_pred             CeEEEeCcCHHHHHHHHHHHHC-cCeEEEEecCCCCCCccccccccccccccccccccccccccccccccccccCCCccc
Confidence            6999999999999999999999 99999999997653221111000 00 00001111110000                


Q ss_pred             --cccccccccccceeeccccccCCcccccchhhhcCCchhHHHHHHhcCCCCChhHHHHHHHhhhhchhhhcccccccc
Q psy14408        496 --SQFAGLGVRNARIKITAGKGLGGSSAVQNILYQRGTSYDYENFAKLGYNGWGYDETLKYFVKSEDYRSVIYNESKAVH  573 (720)
Q Consensus       496 --~~~g~l~l~~~~i~~~~G~~lGGgStvN~~~~~r~s~~d~~eWae~g~~dWsydellpyF~s~e~~~~~sld~d~~v~  573 (720)
                        ..+.........+.+.+|.++||++.+|++.+.+..+.+++.|...   .|.++++.+||++++++.+....      
T Consensus        82 ~~~~g~~~~~~~~~~~~~~g~~lGG~S~i~~~~~~r~~~~~f~~~~~~---~~~~~~l~pyy~~ae~~l~~~~~------  152 (367)
T d1n4wa1          82 DPYAGVLDRVNYDQMSVYVGRGVGGGSLVNGGMAVEPKRSYFEEILPR---VDSSEMYDRYFPRANSMLRVNHI------  152 (367)
T ss_dssp             CCCBCSEEEEECSSCEEEEECSTTGGGGTSCCBCCCCCHHHHHHHCTT---SCHHHHHHTHHHHHHHHHTCBCC------
T ss_pred             ccccCccccccCCccceeeEEecCCCCceecceeeccChhHhhccccc---cCcHHHHHHHHHHHHHHhCCCCC------
Confidence              0001111234567788999999999999999999999999888542   23578899999999987643210      


Q ss_pred             CcCCcccccccccccchHHHHHHHHHHHHcCCCCCC-CC-----------CCccccccccccCCccccCcchhHHHHHHH
Q psy14408        574 GTQGYLPVGLFKNKENNIIREIFETSAQELGYPCPK-DM-----------NDRYVDVGFAELPGMTRYGLRFSAADAYLT  641 (720)
Q Consensus       574 ~~~G~L~va~~~~~~~~~~~q~llea~rklG~~~~~-d~-----------ng~~~~~G~~~~~~g~~~G~k~~aa~a~L~  641 (720)
                        ..  ........  ....+.+.+.+++.|+.... +.           .+....+.++.....+..+.+......||.
T Consensus       153 --~~--~~~~~~~~--~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~g~~~~~~~~g~~~~~~~~~k~s~~~~yl~  226 (367)
T d1n4wa1         153 --DT--KWFEDTEW--YKFARVSREQAGKAGLGTVFVPNVYDFGYMQREAAGEVPKSALATEVIYGNNHGKQSLDKTYLA  226 (367)
T ss_dssp             --CH--HHHHHCGG--GHHHHHHHHHHHHTTCCEEECCBSBCHHHHHHHHTTSSCCSGGGTCSTTCCSSSBCCTTTTHHH
T ss_pred             --CC--CccccCCC--ChHHHHHHHHHHHcCcccccccchhhcCCcccccccccCcccccccccccccccccChhHhhhH
Confidence              00  00000111  23445566677777765431 00           011112222222223445667777778999


Q ss_pred             HHHhcCCCeEEEcCeEEEEEEEcc-CCcEEEEEEEecCC---cEEEEEcCcEEEEccCCcchHHHHHHc
Q psy14408        642 PIAGKRTNLYVLKRSKVTKVIIND-QNVATGVEYVNSKG---ETVRVTANKEVILTAGAIANAQLLLLS  706 (720)
Q Consensus       642 ~Aa~e~aGVkIi~gt~VtkIl~e~-gGrAtGV~v~dt~G---~e~tIkAkK~VVVAAGa~~Sp~LLl~S  706 (720)
                      .|+ ++.+++|+.++.|++|+.++ ++.+++|+..+..|   ++++|+|+ +||||||+++|++|||+|
T Consensus       227 ~a~-~~gn~~i~~~t~V~~I~~~~~g~~~v~v~~~~~~~~~~~~~~i~Ak-~VVLaAGai~Tp~LLl~S  293 (367)
T d1n4wa1         227 AAL-GTGKVTIQTLHQVKTIRQTKDGGYALTVEQKDTDGKLLATKEISCR-YLFLGAGSLGSTELLVRA  293 (367)
T ss_dssp             HHH-HTTSEEEEESEEEEEEEECTTSSEEEEEEEECTTCCEEEEEEEEEE-EEEECSHHHHHHHHHHHH
T ss_pred             HHH-hCCCeEEECCCEEEEEEEcCCCCEEEEEEEECCCCcceeEEEEecC-EEEEecchhcCHHHHHhC
Confidence            888 44459999999999999982 34567777766543   34678996 699999999999999999

>d2f5va1 c.3.1.2 (A:43-354,A:553-619) Pyranose 2-oxidase {White-rot fungus (Peniophora sp. SG) [TaxId: 204723]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Pyranose 2-oxidase
species: White-rot fungus (Peniophora sp. SG) [TaxId: 204723]

Probab=99.86  E-value=7.1e-23  Score=211.98  Aligned_cols=72  Identities=22%  Similarity=0.336  Sum_probs=62.3

Q ss_pred             CCCeEEEcCeEEEEEEEc-cCCcEEEEEEEec-CCcEEEEEcCcEEEEccCCcchHHHHHHcCCCCccccccCCC
Q psy14408        647 RTNLYVLKRSKVTKVIIN-DQNVATGVEYVNS-KGETVRVTANKEVILTAGAIANAQLLLLSGIGPKAHLDEVKI  719 (720)
Q Consensus       647 ~aGVkIi~gt~VtkIl~e-~gGrAtGV~v~dt-~G~e~tIkAkK~VVVAAGa~~Sp~LLl~SGIgpk~~L~~~gi  719 (720)
                      +.|++|++++.|++|+++ .+++|+||++.+. +|++++|+|+ +||||+|++.|++||++||++....+....+
T Consensus       230 ~~~~~l~~~a~V~~i~~~~~~~r~~gV~~~d~~~g~~~~i~a~-~vilaaGa~~tp~lL~~Sg~~~~~~~~~~~~  303 (379)
T d2f5va1         230 EERFNLFPAVACERVVRNALNSEIESLHIHDLISGDRFEIKAD-VYVLTAGAVHNTQLLVNSGFGQLGRPNPTNP  303 (379)
T ss_dssp             EEEEEEECSEEEEEEEECTTSSCEEEEEEEETTTCCEEEEEEE-EEEECSCHHHHHHHHHHTTSSCCSSCCTTSC
T ss_pred             CCCCEEecCCEEEEEEEeCCCCEEEEEEEEECCCCEEEEEece-EEEeccCccCCHHHHhhcccccccccccccC
Confidence            568999999999999997 3568999999886 5778889996 6999999999999999999998777665543

>d1y0pa2 c.3.1.4 (A:111-361,A:512-568) Flavocytochrome c3 (respiratory fumarate reductase) {Shewanella frigidimarina [TaxId: 56812]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: Succinate dehydrogenase/fumarate reductase flavoprotein N-terminal domain
domain: Flavocytochrome c3 (respiratory fumarate reductase)
species: Shewanella frigidimarina [TaxId: 56812]

Probab=99.76  E-value=1.1e-17  Score=170.69  Aligned_cols=63  Identities=17%  Similarity=0.212  Sum_probs=51.6

Q ss_pred             HHHHHHHhcCCCeEEEcCeEEEEEEEccCCcEEEEEEEecCCcEEEEEcCcEEEEccCCcchHHHH
Q psy14408        638 AYLTPIAGKRTNLYVLKRSKVTKVIINDQNVATGVEYVNSKGETVRVTANKEVILTAGAIANAQLL  703 (720)
Q Consensus       638 a~L~~Aa~e~aGVkIi~gt~VtkIl~e~gGrAtGV~v~dt~G~e~tIkAkK~VVVAAGa~~Sp~LL  703 (720)
                      .++..++  +.|++|+++++|++|+.+++|+|+||++.+..+++..|+|+ .||||||++....-+
T Consensus       150 ~l~~~a~--~~gv~i~~~~~v~~li~~~~G~V~Gv~~~~~~~~~~~i~Ak-~VVlAtGG~~~n~~~  212 (308)
T d1y0pa2         150 VLYDNAV--KRNIDLRMNTRGIEVLKDDKGTVKGILVKGMYKGYYWVKAD-AVILATGGFAKNNER  212 (308)
T ss_dssp             HHHHHHH--HTTCEEESSEEEEEEEECTTSCEEEEEEEETTTEEEEEECS-EEEECCCCCTTCHHH
T ss_pred             HHHHHHH--hccceEEEeeccchhhhhcccccccccccccccceeEeecC-eEEEccCcccccHHH
Confidence            4444454  78999999999999999756899999999877777899997 699999998764433

>d1pj5a2 c.3.1.2 (A:4-219,A:339-427) N,N-dimethylglycine oxidase {Arthrobacter globiformis [TaxId: 1665]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: N,N-dimethylglycine oxidase
species: Arthrobacter globiformis [TaxId: 1665]

Probab=99.72  E-value=3.8e-17  Score=166.05  Aligned_cols=62  Identities=21%  Similarity=0.244  Sum_probs=51.0

Q ss_pred             HHHHHHhcCCCeEEEcCeEEEEEEEccCCcEEEEEEEecCCcEEEEEcCcEEEEccCCcchHHHHHHcCCC
Q psy14408        639 YLTPIAGKRTNLYVLKRSKVTKVIINDQNVATGVEYVNSKGETVRVTANKEVILTAGAIANAQLLLLSGIG  709 (720)
Q Consensus       639 ~L~~Aa~e~aGVkIi~gt~VtkIl~e~gGrAtGV~v~dt~G~e~tIkAkK~VVVAAGa~~Sp~LLl~SGIg  709 (720)
                      .|.+++ ++.|++|+++++|++|+.+ +++++||++.+  |   +|+|+ .||+|+|+ |+..|+.+.|+.
T Consensus       153 ~l~~~a-~~~gv~i~~~~~V~~i~~~-~~~v~~V~T~~--g---~i~a~-~VV~aaG~-~s~~l~~~~g~~  214 (305)
T d1pj5a2         153 LLIKRT-ESAGVTYRGSTTVTGIEQS-GGRVTGVQTAD--G---VIPAD-IVVSCAGF-WGAKIGAMIGMA  214 (305)
T ss_dssp             HHHHHH-HHTTCEEECSCCEEEEEEE-TTEEEEEEETT--E---EEECS-EEEECCGG-GHHHHHHTTTCC
T ss_pred             hHHhhh-hcccccccCCceEEEEEEe-CCEEEEEeccc--e---eEECC-EEEEecch-hHHHHHHHcCCc
Confidence            344444 4789999999999999998 89999998633  3   79998 59999996 799999988876

>d2gf3a1 c.3.1.2 (A:1-217,A:322-385) Sarcosine oxidase {Bacillus sp., strain b0618 [TaxId: 1409]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Sarcosine oxidase
species: Bacillus sp., strain b0618 [TaxId: 1409]

Probab=99.72  E-value=3.6e-17  Score=164.23  Aligned_cols=63  Identities=24%  Similarity=0.311  Sum_probs=47.9

Q ss_pred             HHHHHHHhcCCCeEEEcCeEEEEEEEccCCcEEEEEEEecCCcEEEEEcCcEEEEccCCcchHHHHHHcCCCC
Q psy14408        638 AYLTPIAGKRTNLYVLKRSKVTKVIINDQNVATGVEYVNSKGETVRVTANKEVILTAGAIANAQLLLLSGIGP  710 (720)
Q Consensus       638 a~L~~Aa~e~aGVkIi~gt~VtkIl~e~gGrAtGV~v~dt~G~e~tIkAkK~VVVAAGa~~Sp~LLl~SGIgp  710 (720)
                      ..|.+++ ++.|++|+++++|++|+.+ ++++ +|++.  +|   +|+|+ +||+|||+ |+..||.+.|+..
T Consensus       154 ~~l~~~a-~~~Gv~i~~~~~V~~i~~~-~~~v-~V~t~--~g---~i~a~-~VViAaG~-~s~~l~~~lg~~~  216 (281)
T d2gf3a1         154 RAYRELA-EARGAKVLTHTRVEDFDIS-PDSV-KIETA--NG---SYTAD-KLIVSMGA-WNSKLLSKLNLDI  216 (281)
T ss_dssp             HHHHHHH-HHTTCEEECSCCEEEEEEC-SSCE-EEEET--TE---EEEEE-EEEECCGG-GHHHHGGGGTEEC
T ss_pred             ccccccc-ccccccccCCcEEEEEEEE-CCEE-EEEEC--Cc---EEEcC-EEEECCCC-cchhhHHhcCCcc
Confidence            3444454 4889999999999999998 6654 34432  24   68997 59999997 7889998888764

>d1d4ca2 c.3.1.4 (A:103-359,A:506-570) Flavocytochrome c3 (respiratory fumarate reductase) {Shewanella putrefaciens [TaxId: 24]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: Succinate dehydrogenase/fumarate reductase flavoprotein N-terminal domain
domain: Flavocytochrome c3 (respiratory fumarate reductase)
species: Shewanella putrefaciens [TaxId: 24]

Probab=99.71  E-value=3.2e-17  Score=169.11  Aligned_cols=63  Identities=16%  Similarity=0.193  Sum_probs=51.2

Q ss_pred             HHHHHHHhcCCCeEEEcCeEEEEEEEccCCcEEEEEEEecCCcEEEEEcCcEEEEccCCcchHHHH
Q psy14408        638 AYLTPIAGKRTNLYVLKRSKVTKVIINDQNVATGVEYVNSKGETVRVTANKEVILTAGAIANAQLL  703 (720)
Q Consensus       638 a~L~~Aa~e~aGVkIi~gt~VtkIl~e~gGrAtGV~v~dt~G~e~tIkAkK~VVVAAGa~~Sp~LL  703 (720)
                      .++..+.  +.|++|+++++|++|+.+++|+|+||.+.+..++..+|+|+ .||||||++....-+
T Consensus       157 ~l~~~a~--~~gv~i~~~t~v~~li~d~~G~V~Gv~~~~~~~~~~~i~Ak-~VIlAtGG~~~n~~~  219 (322)
T d1d4ca2         157 VLWDNAV--KRGTDIRLNSRVVRILEDASGKVTGVLVKGEYTGYYVIKAD-AVVIAAGGFAKNNER  219 (322)
T ss_dssp             HHHHHHH--HTTCEEETTEEEEEEECCSSSCCCEEEEEETTTEEEEEECS-EEEECCCCCTTCHHH
T ss_pred             HHHHHHH--hcCceEEEeeecccccccccccccceEEEeecccEEEEeCC-eEEEcCCCcccCHHH
Confidence            3444454  78999999999999998757899999999876777789996 699999998764433

>d1ryia1 c.3.1.2 (A:1-218,A:307-364) Glycine oxidase ThiO {Bacillus sp. [TaxId: 1409]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Glycine oxidase ThiO
species: Bacillus sp. [TaxId: 1409]

Probab=99.70  E-value=4.9e-18  Score=169.66  Aligned_cols=64  Identities=19%  Similarity=0.185  Sum_probs=49.7

Q ss_pred             HHHHHHhcCCCeEEEcCeEEEEEEEccCCcEEEEEEEecCCcEEEEEcCcEEEEccCCcchHHHHHHcCCCCcc
Q psy14408        639 YLTPIAGKRTNLYVLKRSKVTKVIINDQNVATGVEYVNSKGETVRVTANKEVILTAGAIANAQLLLLSGIGPKA  712 (720)
Q Consensus       639 ~L~~Aa~e~aGVkIi~gt~VtkIl~e~gGrAtGV~v~dt~G~e~tIkAkK~VVVAAGa~~Sp~LLl~SGIgpk~  712 (720)
                      .|.+++ ++.|++|+++++|++|+.+  +++++|++.+  |   +|+|+ .||+|+|+ |+..|+...|+....
T Consensus       156 ~l~~~~-~~~Gv~i~~~~~V~~i~~~--~~~~~V~t~~--g---~i~a~-~vV~AaG~-~s~~l~~~~G~~~~~  219 (276)
T d1ryia1         156 AYVKAA-KMLGAEIFEHTPVLHVERD--GEALFIKTPS--G---DVWAN-HVVVASGV-WSGMFFKQLGLNNAD  219 (276)
T ss_dssp             HHHHHH-HHTTCEEETTCCCCEEECS--SSSEEEEETT--E---EEEEE-EEEECCGG-GTHHHHHHTTCCCCS
T ss_pred             HHHHHH-HHcCCEEecceEEEeEEee--cceEEEecCC--e---EEEcC-EEEECCCc-cHHHHHhhcCCCccc
Confidence            344444 4889999999999999865  4556776543  3   78997 59999997 799999999998654

>d1qo8a2 c.3.1.4 (A:103-359,A:506-565) Flavocytochrome c3 (respiratory fumarate reductase) {Shewanella frigidimarina [TaxId: 56812]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: Succinate dehydrogenase/fumarate reductase flavoprotein N-terminal domain
domain: Flavocytochrome c3 (respiratory fumarate reductase)
species: Shewanella frigidimarina [TaxId: 56812]

Probab=99.68  E-value=1.9e-16  Score=163.58  Aligned_cols=64  Identities=20%  Similarity=0.283  Sum_probs=51.6

Q ss_pred             HHHHHHhcCCCeEEEcCeEEEEEEEccCCcEEEEEEEecCCcEEEEEcCcEEEEccCCcchHHHHH
Q psy14408        639 YLTPIAGKRTNLYVLKRSKVTKVIINDQNVATGVEYVNSKGETVRVTANKEVILTAGAIANAQLLL  704 (720)
Q Consensus       639 ~L~~Aa~e~aGVkIi~gt~VtkIl~e~gGrAtGV~v~dt~G~e~tIkAkK~VVVAAGa~~Sp~LLl  704 (720)
                      .|..++ ++.|++++++++|++|+++++++|.||.+.+.+++..+|+|+ .||||||++....-|+
T Consensus       153 ~L~~~~-~~~g~~i~~~~~v~~l~~~~~g~V~Gv~~~~~~~~~~~i~Ak-~VVlAtGG~~~n~~~~  216 (317)
T d1qo8a2         153 TLRKAA-KEQGIDTRLNSRVVKLVVNDDHSVVGAVVHGKHTGYYMIGAK-SVVLATGGYGMNKEMI  216 (317)
T ss_dssp             HHHHHH-HHTTCCEECSEEEEEEEECTTSBEEEEEEEETTTEEEEEEEE-EEEECCCCCTTCHHHH
T ss_pred             HHHHHh-hhccceeeeccchhheeecccccceeeEeecccceEEEEecc-ceEEeccccccCHHHH
Confidence            344444 478999999999999988657899999999877777889996 6999999987554443

>d2i0za1 c.3.1.8 (A:1-192,A:362-420) Flavoprotein BC4706 {Bacillus cereus [TaxId: 1396]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: HI0933 N-terminal domain-like
domain: Flavoprotein BC4706
species: Bacillus cereus [TaxId: 1396]

Probab=99.61  E-value=1.7e-15  Score=149.13  Aligned_cols=57  Identities=18%  Similarity=0.218  Sum_probs=44.6

Q ss_pred             HHHHHHHhcCCCeEEEcCeEEEEEEEccCCcEEEEEEEecCCcEEEEEcCcEEEEccCCcchHH
Q psy14408        638 AYLTPIAGKRTNLYVLKRSKVTKVIINDQNVATGVEYVNSKGETVRVTANKEVILTAGAIANAQ  701 (720)
Q Consensus       638 a~L~~Aa~e~aGVkIi~gt~VtkIl~e~gGrAtGV~v~dt~G~e~tIkAkK~VVVAAGa~~Sp~  701 (720)
                      .+|...+ ++.|++|+++++|++|+.+ ++++.+|.+.+  |+  +|+|+. ||+|+|+...+.
T Consensus       114 ~~L~~~~-~~~gv~i~~~~~v~~i~~~-~~~~~~v~~~~--g~--~i~a~~-vI~AtGg~S~p~  170 (251)
T d2i0za1         114 DALLTRL-KDLGVKIRTNTPVETIEYE-NGQTKAVILQT--GE--VLETNH-VVIAVGGKSVPQ  170 (251)
T ss_dssp             HHHHHHH-HHTTCEEECSCCEEEEEEE-TTEEEEEEETT--CC--EEECSC-EEECCCCSSSGG
T ss_pred             HHHHHHH-HHcCCcccCCcEEEEEEEE-CCEEEEEEeCC--CC--eEecCe-EEEccCCccccc
Confidence            3444444 4789999999999999998 88888887654  54  689985 999999876553

>d2bcgg1 c.3.1.3 (G:5-301) Guanine nucleotide dissociation inhibitor, GDI {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: GDI-like N domain
domain: Guanine nucleotide dissociation inhibitor, GDI
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.60  E-value=7.4e-16  Score=144.74  Aligned_cols=42  Identities=26%  Similarity=0.382  Sum_probs=38.0

Q ss_pred             CCCcccEEEECCcHHHHHHHHHHHhcCCCcEEEEccCCCCCCC
Q psy14408        430 SGDCFDIIIVGASAAGCVLANRLSEVSSLKVLLIEAGGDTPIH  472 (720)
Q Consensus       430 ~d~eyDVVIIGSGiAGLvAA~~LAea~G~KVLVLEKG~~~~~s  472 (720)
                      .+.+|||||||||++||+||++||++ |+||+||||+.+.++.
T Consensus         2 m~~~yDviViGaG~~Gl~~A~~La~~-G~~V~vlE~~~~~GG~   43 (297)
T d2bcgg1           2 IDTDYDVIVLGTGITECILSGLLSVD-GKKVLHIDKQDHYGGE   43 (297)
T ss_dssp             CCCBCSEEEECCSHHHHHHHHHHHHT-TCCEEEECSSSSSCGG
T ss_pred             CCCcCCEEEECcCHHHHHHHHHHHHC-CCCEEEEcCCCCCCcc
Confidence            35689999999999999999999999 9999999999877554

>d1kf6a2 c.3.1.4 (A:0-225,A:358-442) Fumarate reductase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: Succinate dehydrogenase/fumarate reductase flavoprotein N-terminal domain
domain: Fumarate reductase
species: Escherichia coli [TaxId: 562]

Probab=99.56  E-value=4e-14  Score=146.39  Aligned_cols=58  Identities=16%  Similarity=0.325  Sum_probs=48.6

Q ss_pred             HHHHHHHhcCCCeEEEcCeEEEEEEEccCCcEEEEEEEec-CCcEEEEEcCcEEEEccCCcc
Q psy14408        638 AYLTPIAGKRTNLYVLKRSKVTKVIINDQNVATGVEYVNS-KGETVRVTANKEVILTAGAIA  698 (720)
Q Consensus       638 a~L~~Aa~e~aGVkIi~gt~VtkIl~e~gGrAtGV~v~dt-~G~e~tIkAkK~VVVAAGa~~  698 (720)
                      .++..++ ++.|++|++++.|++|+.+ +|+|.||...+. +|+...++|+ .||||||++.
T Consensus       139 ~~l~~~~-~~~~v~i~~~~~v~~Ll~d-~g~v~Gvv~~~~~~g~~~~~~Ak-aVILATGG~g  197 (311)
T d1kf6a2         139 TLFQTSL-QFPQIQRFDEHFVLDILVD-DGHVRGLVAMNMMEGTLVQIRAN-AVVMATGGAG  197 (311)
T ss_dssp             HHHHHHT-TCTTEEEEETEEEEEEEEE-TTEEEEEEEEETTTTEEEEEECS-CEEECCCCCG
T ss_pred             hHHHHHH-ccCcceeEeeeEeeeeEec-CCcceeEEEEEcCCCcEEEEECC-EEEEcCCCcc
Confidence            4555555 5678999999999999999 899999998875 6777888996 5999999975

>d2bs2a2 c.3.1.4 (A:1-250,A:372-457) Fumarate reductase {Wolinella succinogenes [TaxId: 844]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: Succinate dehydrogenase/fumarate reductase flavoprotein N-terminal domain
domain: Fumarate reductase
species: Wolinella succinogenes [TaxId: 844]

Probab=99.55  E-value=2.9e-14  Score=146.42  Aligned_cols=51  Identities=12%  Similarity=0.246  Sum_probs=45.3

Q ss_pred             cCCCeEEEcCeEEEEEEEccCCcEEEEEEEec-CCcEEEEEcCcEEEEccCCcc
Q psy14408        646 KRTNLYVLKRSKVTKVIINDQNVATGVEYVNS-KGETVRVTANKEVILTAGAIA  698 (720)
Q Consensus       646 e~aGVkIi~gt~VtkIl~e~gGrAtGV~v~dt-~G~e~tIkAkK~VVVAAGa~~  698 (720)
                      ++.|++|+.++.|++++.+ +++|.|+.+.+. +|+..+|+|+ .||||||++.
T Consensus       169 ~~~gv~i~~~~~~~~li~~-~~~v~g~~~~~~~~g~~~~i~Ak-~VvlATGG~~  220 (336)
T d2bs2a2         169 LKLGVSIQDRKEAIALIHQ-DGKCYGAVVRDLVTGDIIAYVAK-GTLIATGGYG  220 (336)
T ss_dssp             HHHTCEEECSEEEEEEEEE-TTEEEEEEEEETTTCCEEEEECS-EEEECCCCCG
T ss_pred             Hhccccccceeeeeecccc-cccccceeEEeccCCcEEEEecC-eEEEeccccc
Confidence            4789999999999999999 899999988865 6888899996 7999999885

>d2ivda1 c.3.1.2 (A:10-306,A:415-464) Protoporphyrinogen oxidase {Myxococcus xanthus [TaxId: 34]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Protoporphyrinogen oxidase
species: Myxococcus xanthus [TaxId: 34]

Probab=99.47  E-value=5.7e-14  Score=135.94  Aligned_cols=55  Identities=18%  Similarity=0.137  Sum_probs=40.9

Q ss_pred             cCCCeEEEcCeEEEEEEEccCCcEEEEEEEecCCcEEEEEcCcEEEEccCCcchHHHHH
Q psy14408        646 KRTNLYVLKRSKVTKVIINDQNVATGVEYVNSKGETVRVTANKEVILTAGAIANAQLLL  704 (720)
Q Consensus       646 e~aGVkIi~gt~VtkIl~e~gGrAtGV~v~dt~G~e~tIkAkK~VVVAAGa~~Sp~LLl  704 (720)
                      ++.|++|+++++|++|..+ +++++ |.+.+ +|+..++.|+ .||+|+++..+.+||.
T Consensus       230 ~~~g~~i~~~~~V~~I~~~-~~~~~-v~~~~-~~~~~~~~ad-~VV~a~p~~~~~~Ll~  284 (347)
T d2ivda1         230 ASLGDAAHVGARVEGLARE-DGGWR-LIIEE-HGRRAELSVA-QVVLAAPAHATAKLLR  284 (347)
T ss_dssp             HHHGGGEESSEEEEEEECC---CCE-EEEEE-TTEEEEEECS-EEEECSCHHHHHHHHT
T ss_pred             HHhhcccccCCEEEEEEEe-CCeEE-EEEEc-CCeEEEEECC-EEEECCCHHHHHHhcc
Confidence            4568999999999999987 55554 33333 4666789998 5999999887877764

>d1jnra2 c.3.1.4 (A:2-256,A:402-502) Adenylylsulfate reductase A subunit {Archaeon Archaeoglobus fulgidus [TaxId: 2234]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: Succinate dehydrogenase/fumarate reductase flavoprotein N-terminal domain
domain: Adenylylsulfate reductase A subunit
species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]

Probab=99.45  E-value=5.9e-13  Score=137.32  Aligned_cols=51  Identities=18%  Similarity=0.220  Sum_probs=40.6

Q ss_pred             CCCeEEEcCeEEEEEEEc--cCCcEEEEEEEec-CCcEEEEEcCcEEEEccCCcc
Q psy14408        647 RTNLYVLKRSKVTKVIIN--DQNVATGVEYVNS-KGETVRVTANKEVILTAGAIA  698 (720)
Q Consensus       647 ~aGVkIi~gt~VtkIl~e--~gGrAtGV~v~dt-~G~e~tIkAkK~VVVAAGa~~  698 (720)
                      ..+.+++..+.+++++..  ..+++.|+...+. +|+...|+|+ .||||||++.
T Consensus       164 ~~~~~i~~~~~~~~l~~~~~~~~~v~~~~~~~~~~G~~~~i~Ak-~VILATGG~~  217 (356)
T d1jnra2         164 VGEENIYERVFIFELLKDNNDPNAVAGAVGFSVREPKFYVFKAK-AVILATGGAT  217 (356)
T ss_dssp             HCGGGEECSEEEEEEEECTTCTTBEEEEEEEESSSSCEEEEECS-EEEECCCCBC
T ss_pred             hcceEEEEEEEEEEeeeecccccceeeeEEEEeecCcEEEeeCC-EEEEcCCCcc
Confidence            457888999999999875  3467888777654 6888899996 6999999974

>d1chua2 c.3.1.4 (A:2-237,A:354-422) L-aspartate oxidase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: Succinate dehydrogenase/fumarate reductase flavoprotein N-terminal domain
domain: L-aspartate oxidase
species: Escherichia coli [TaxId: 562]

Probab=99.44  E-value=3.4e-13  Score=137.77  Aligned_cols=52  Identities=25%  Similarity=0.395  Sum_probs=42.7

Q ss_pred             cCCCeEEEcCeEEEEEEEccC------CcEEEEEEEec-CCcEEEEEcCcEEEEccCCcc
Q psy14408        646 KRTNLYVLKRSKVTKVIINDQ------NVATGVEYVNS-KGETVRVTANKEVILTAGAIA  698 (720)
Q Consensus       646 e~aGVkIi~gt~VtkIl~e~g------GrAtGV~v~dt-~G~e~tIkAkK~VVVAAGa~~  698 (720)
                      ++.|++++.++.+++++++++      ++|+||...+. +|+...+.++ .||||+|++.
T Consensus       149 ~~~~v~~~~~~~~~~Li~~~~~~~~~~~rv~Gv~~~~~~~g~~~~~~ak-~VilAtGG~~  207 (305)
T d1chua2         149 NHPNIRVLERTNAVDLIVSDKIGLPGTRRVVGAWVWNRNKETVETCHAK-AVVLATGGAS  207 (305)
T ss_dssp             HCTTEEEECSEEEEEEEEGGGTTCCSSCBEEEEEEEETTTTEEEEEECS-EEEECCCCCG
T ss_pred             hccCcceeceeEEEEEEEEcCcccccCceEEEEEEEeCCCCcEEEEeec-ceEEeeeccc
Confidence            478999999999999999822      37999999775 5666777876 7999999875

>d1neka2 c.3.1.4 (A:1-235,A:356-450) Succinate dehydogenase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: Succinate dehydrogenase/fumarate reductase flavoprotein N-terminal domain
domain: Succinate dehydogenase
species: Escherichia coli [TaxId: 562]

Probab=99.41  E-value=2.7e-12  Score=132.96  Aligned_cols=52  Identities=15%  Similarity=0.258  Sum_probs=42.9

Q ss_pred             cCCCeEEEcCeEEEEEEEccCCcEEEEEEEec-CCcEEEEEcCcEEEEccCCcc
Q psy14408        646 KRTNLYVLKRSKVTKVIINDQNVATGVEYVNS-KGETVRVTANKEVILTAGAIA  698 (720)
Q Consensus       646 e~aGVkIi~gt~VtkIl~e~gGrAtGV~v~dt-~G~e~tIkAkK~VVVAAGa~~  698 (720)
                      ++.|++++.++.+.+++.++++++.|+...+. +|+...++|+ .||+|+|++.
T Consensus       154 ~~~~v~~~~~~~~~~l~~~~~~~~~g~~~~~~~~g~~~~~~a~-~vIlAtGG~~  206 (330)
T d1neka2         154 LKNHTTIFSEWYALDLVKNQDGAVVGCTALCIETGEVVYFKAR-ATVLATGGAG  206 (330)
T ss_dssp             HHTTCEEECSEEEEEEEECTTSCEEEEEEEETTTCCEEEEEES-CEEECCCCCG
T ss_pred             HhcCCeEEEEEEEEEeeeeccccceeeeeEEccCCcEEEEecc-EEEEcCCCcc
Confidence            37899999999999998864677877776654 6888889997 5999999875

>d2gqfa1 c.3.1.8 (A:1-194,A:343-401) Hypothetical protein HI0933 {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: HI0933 N-terminal domain-like
domain: Hypothetical protein HI0933
species: Haemophilus influenzae [TaxId: 727]

Probab=99.38  E-value=3.7e-13  Score=134.05  Aligned_cols=37  Identities=30%  Similarity=0.445  Sum_probs=33.9

Q ss_pred             CcccEEEECCcHHHHHHHHHHHhcCCCcEEEEccCCCC
Q psy14408        432 DCFDIIIVGASAAGCVLANRLSEVSSLKVLLIEAGGDT  469 (720)
Q Consensus       432 ~eyDVVIIGSGiAGLvAA~~LAea~G~KVLVLEKG~~~  469 (720)
                      ..+||||||||++||.||++|+++ |++|+||||+...
T Consensus         3 ~~~DViIIGaG~aGl~aA~~la~~-G~~V~vlEk~~~~   39 (253)
T d2gqfa1           3 QYSENIIIGAGAAGLFCAAQLAKL-GKSVTVFDNGKKI   39 (253)
T ss_dssp             EECSEEEECCSHHHHHHHHHHHHT-TCCEEEECSSSSS
T ss_pred             CCCcEEEECcCHHHHHHHHHHHHC-CCcEEEEecCCCC
Confidence            357999999999999999999999 9999999998644

>d2v5za1 c.3.1.2 (A:6-289,A:402-500) Monoamine oxidase B {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Monoamine oxidase B
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.19  E-value=2e-11  Score=121.77  Aligned_cols=37  Identities=27%  Similarity=0.457  Sum_probs=34.4

Q ss_pred             cEEEECCcHHHHHHHHHHHhcCCCcEEEEccCCCCCCC
Q psy14408        435 DIIIVGASAAGCVLANRLSEVSSLKVLLIEAGGDTPIH  472 (720)
Q Consensus       435 DVVIIGSGiAGLvAA~~LAea~G~KVLVLEKG~~~~~s  472 (720)
                      ||||||||++||+||++|+++ |++|+||||....++.
T Consensus         1 DViVIGaG~aGL~aA~~L~~~-G~~V~VlE~~~~~GGr   37 (383)
T d2v5za1           1 DVVVVGGGISGMAAAKLLHDS-GLNVVVLEARDRVGGR   37 (383)
T ss_dssp             SEEEECCBHHHHHHHHHHHHT-TCCEEEEESSSSSBTT
T ss_pred             CEEEECCCHHHHHHHHHHHhC-CCCEEEEecCCCCcce
Confidence            899999999999999999999 9999999998877553

>d2iida1 c.3.1.2 (A:4-319,A:433-486) L-aminoacid oxidase {Malayan pit viper (Calloselasma rhodostoma) [TaxId: 8717]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: L-aminoacid oxidase
species: Malayan pit viper (Calloselasma rhodostoma) [TaxId: 8717]

Probab=99.16  E-value=9.2e-12  Score=122.99  Aligned_cols=38  Identities=29%  Similarity=0.306  Sum_probs=34.7

Q ss_pred             ccEEEECCcHHHHHHHHHHHhcCCCcEEEEccCCCCCCC
Q psy14408        434 FDIIIVGASAAGCVLANRLSEVSSLKVLLIEAGGDTPIH  472 (720)
Q Consensus       434 yDVVIIGSGiAGLvAA~~LAea~G~KVLVLEKG~~~~~s  472 (720)
                      .+|||||||++||+||++|+++ |++|+||||+...++.
T Consensus        31 kkV~IIGaG~aGLsaA~~L~~~-G~~V~vlE~~~~~GG~   68 (370)
T d2iida1          31 KHVVIVGAGMAGLSAAYVLAGA-GHQVTVLEASERPGGR   68 (370)
T ss_dssp             CEEEEECCBHHHHHHHHHHHHH-TCEEEEECSSSSSBTT
T ss_pred             CeEEEECCCHHHHHHHHHHHHC-CCCEEEEeCCCCCCCe
Confidence            3899999999999999999999 9999999998877543

>d2cula1 c.3.1.7 (A:2-231) GidA-related protein TTHA1897 {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: GidA-like
domain: GidA-related protein TTHA1897
species: Thermus thermophilus [TaxId: 274]

Probab=98.99  E-value=1.1e-09  Score=109.55  Aligned_cols=33  Identities=27%  Similarity=0.461  Sum_probs=31.7

Q ss_pred             cccEEEECCcHHHHHHHHHHHhcCCCcEEEEccC
Q psy14408        433 CFDIIIVGASAAGCVLANRLSEVSSLKVLLIEAG  466 (720)
Q Consensus       433 eyDVVIIGSGiAGLvAA~~LAea~G~KVLVLEKG  466 (720)
                      .|||||||||.+|+.||+++||. |.||+|||+.
T Consensus         2 ~YDVIVIGgG~AG~eAA~~aAR~-G~ktllit~~   34 (230)
T d2cula1           2 AYQVLIVGAGFSGAETAFWLAQK-GVRVGLLTQS   34 (230)
T ss_dssp             CCSEEEECCSHHHHHHHHHHHHT-TCCEEEEESC
T ss_pred             CCcEEEECcCHHHHHHHHHHHHC-CCcEEEEEec
Confidence            58999999999999999999999 9999999976

>d1rp0a1 c.3.1.6 (A:7-284) Thiazole biosynthetic enzyme Thi4 {Thale cress(Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: Thi4-like
domain: Thiazole biosynthetic enzyme Thi4
species: Thale cress(Arabidopsis thaliana) [TaxId: 3702]

Probab=98.94  E-value=5.1e-09  Score=105.16  Aligned_cols=39  Identities=28%  Similarity=0.376  Sum_probs=34.3

Q ss_pred             CCcccEEEECCcHHHHHHHHHHHhcCCCcEEEEccCCCC
Q psy14408        431 GDCFDIIIVGASAAGCVLANRLSEVSSLKVLLIEAGGDT  469 (720)
Q Consensus       431 d~eyDVVIIGSGiAGLvAA~~LAea~G~KVLVLEKG~~~  469 (720)
                      ..++||||||||++||+||++||++.|++|+||||+...
T Consensus        31 ~~e~DViVIGaGpaGL~aA~~LA~~~G~~V~vlE~~~~~   69 (278)
T d1rp0a1          31 YAETDVVVVGAGSAGLSAAYEISKNPNVQVAIIEQSVSP   69 (278)
T ss_dssp             HTEEEEEEECCSHHHHHHHHHHHTSTTSCEEEEESSSSC
T ss_pred             ccCCCEEEECCCHHHHHHHHHHHHccCCeEEEEecCCCC
Confidence            357899999999999999999997449999999998544

>d2gv8a1 c.3.1.5 (A:3-180,A:288-444) Flavin-dependent monoxygenase SPBP16F5.08c {Schizosaccharomyces pombe [TaxId: 4896]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Flavin-dependent monoxygenase SPBP16F5.08c
species: Schizosaccharomyces pombe [TaxId: 4896]

Probab=98.85  E-value=1.6e-08  Score=103.72  Aligned_cols=61  Identities=11%  Similarity=0.101  Sum_probs=42.8

Q ss_pred             HHHHHHHHHhcCCCeEEEcCeEEEEEEEccCCcEEEEEEEec-C-CcEEEEEcCcEEEEccCCcchH
Q psy14408        636 ADAYLTPIAGKRTNLYVLKRSKVTKVIINDQNVATGVEYVNS-K-GETVRVTANKEVILTAGAIANA  700 (720)
Q Consensus       636 a~a~L~~Aa~e~aGVkIi~gt~VtkIl~e~gGrAtGV~v~dt-~-G~e~tIkAkK~VVVAAGa~~Sp  700 (720)
                      ...+|...+ ++.+..|+.+++|++|..+ +++.. |++.+. . ++.....++ .||+|+|.+..+
T Consensus       115 ~~~yl~~~~-~~~~~~I~~~t~V~~v~~~-~~~w~-Vt~~~~~~~~~~~~~~~d-~VI~AtG~~s~p  177 (335)
T d2gv8a1         115 IQEYQRIYA-QPLLPFIKLATDVLDIEKK-DGSWV-VTYKGTKAGSPISKDIFD-AVSICNGHYEVP  177 (335)
T ss_dssp             HHHHHHHHH-GGGGGGEECSEEEEEEEEE-TTEEE-EEEEESSTTCCEEEEEES-EEEECCCSSSSB
T ss_pred             HHHHHHHHH-HHhhhcccCceEEEEEEec-CCEEE-EEEEecCCCCeEEEEEee-EEEEcccccccc
Confidence            345676666 5668889999999999988 66633 555553 2 233456687 699999987544

>d1w4xa1 c.3.1.5 (A:10-154,A:390-542) Phenylacetone monooxygenase {Thermobifida fusca [TaxId: 2021]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Phenylacetone monooxygenase
species: Thermobifida fusca [TaxId: 2021]

Probab=98.83  E-value=6.1e-09  Score=107.06  Aligned_cols=37  Identities=35%  Similarity=0.548  Sum_probs=33.8

Q ss_pred             CcccEEEECCcHHHHHHHHHHHhcCCCcEEEEccCCCC
Q psy14408        432 DCFDIIIVGASAAGCVLANRLSEVSSLKVLLIEAGGDT  469 (720)
Q Consensus       432 ~eyDVVIIGSGiAGLvAA~~LAea~G~KVLVLEKG~~~  469 (720)
                      .++||||||||++||++|++|.++ |++|+|+||+...
T Consensus         6 ~~~dV~IIGAG~sGl~~a~~L~~~-G~~v~i~Ek~~~i   42 (298)
T d1w4xa1           6 EEVDVLVVGAGFSGLYALYRLREL-GRSVHVIETAGDV   42 (298)
T ss_dssp             SEEEEEEECCSHHHHHHHHHHHHT-TCCEEEECSSSSS
T ss_pred             CCCCEEEECccHHHHHHHHHHHhC-CCCEEEEEcCCCc
Confidence            467999999999999999999999 9999999998543

>d1k0ia1 c.3.1.2 (A:1-173,A:276-394) p-Hydroxybenzoate hydroxylase, PHBH {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: p-Hydroxybenzoate hydroxylase, PHBH
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=98.80  E-value=5.9e-09  Score=103.88  Aligned_cols=34  Identities=21%  Similarity=0.402  Sum_probs=32.1

Q ss_pred             cccEEEECCcHHHHHHHHHHHhcCCCcEEEEccCC
Q psy14408        433 CFDIIIVGASAAGCVLANRLSEVSSLKVLLIEAGG  467 (720)
Q Consensus       433 eyDVVIIGSGiAGLvAA~~LAea~G~KVLVLEKG~  467 (720)
                      ++||+|||||++||++|..|+++ |++|+||||..
T Consensus         2 k~~V~IvGaGp~Gl~~A~~L~~~-G~~v~vlE~~~   35 (292)
T d1k0ia1           2 KTQVAIIGAGPSGLLLGQLLHKA-GIDNVILERQT   35 (292)
T ss_dssp             BCSEEEECCSHHHHHHHHHHHHH-TCCEEEECSSC
T ss_pred             CCCEEEECcCHHHHHHHHHHHHC-CCCEEEEeCCC
Confidence            56999999999999999999999 99999999973

>d2dw4a2 c.3.1.2 (A:274-654,A:764-831) Lysine-specific histone demethylase 1, LSD1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Lysine-specific histone demethylase 1, LSD1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.76  E-value=2.4e-09  Score=103.08  Aligned_cols=40  Identities=25%  Similarity=0.363  Sum_probs=36.2

Q ss_pred             CcccEEEECCcHHHHHHHHHHHhcCCCcEEEEccCCCCCCC
Q psy14408        432 DCFDIIIVGASAAGCVLANRLSEVSSLKVLLIEAGGDTPIH  472 (720)
Q Consensus       432 ~eyDVVIIGSGiAGLvAA~~LAea~G~KVLVLEKG~~~~~s  472 (720)
                      ...+|||||||++||+||++|+++ |++|+||||.+..++.
T Consensus         4 ~~~kViVIGaG~aGL~aA~~L~~~-G~~V~VlEa~~r~GGr   43 (449)
T d2dw4a2           4 KTGKVIIIGSGVSGLAAARQLQSF-GMDVTLLEARDRVGGR   43 (449)
T ss_dssp             CCCEEEEECCBHHHHHHHHHHHHT-TCEEEEECSSSSSBTT
T ss_pred             CCCcEEEECCCHHHHHHHHHHHhC-CCCEEEEeCCCCCccc
Confidence            456899999999999999999999 9999999999887654

>d1b5qa1 c.3.1.2 (A:5-293,A:406-463) Polyamine oxidase {Maize (Zea mays) [TaxId: 4577]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Polyamine oxidase
species: Maize (Zea mays) [TaxId: 4577]

Probab=98.71  E-value=4.2e-09  Score=97.56  Aligned_cols=37  Identities=35%  Similarity=0.529  Sum_probs=33.4

Q ss_pred             cEEEECCcHHHHHHHHHHHhcCCC-cEEEEccCCCCCCC
Q psy14408        435 DIIIVGASAAGCVLANRLSEVSSL-KVLLIEAGGDTPIH  472 (720)
Q Consensus       435 DVVIIGSGiAGLvAA~~LAea~G~-KVLVLEKG~~~~~s  472 (720)
                      ||||||||++||+||++|+++ |+ +|+||||....++.
T Consensus         2 ~V~IIGaG~aGL~aA~~L~~~-G~~~V~vlE~~~~~GG~   39 (347)
T d1b5qa1           2 RVIVVGAGMSGISAAKRLSEA-GITDLLILEATDHIGGR   39 (347)
T ss_dssp             CEEEECCBHHHHHHHHHHHHT-TCCCEEEECSSSSSBTT
T ss_pred             CEEEECCcHHHHHHHHHHHhC-CCCcEEEEECCCCCCce
Confidence            899999999999999999999 96 69999998776543

>d3c96a1 c.3.1.2 (A:4-182,A:294-402) Monooxygenase PhzS {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Monooxygenase PhzS
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=98.70  E-value=5.9e-08  Score=94.27  Aligned_cols=34  Identities=35%  Similarity=0.552  Sum_probs=31.4

Q ss_pred             ccEEEECCcHHHHHHHHHHHhcCCC-cEEEEccCCC
Q psy14408        434 FDIIIVGASAAGCVLANRLSEVSSL-KVLLIEAGGD  468 (720)
Q Consensus       434 yDVVIIGSGiAGLvAA~~LAea~G~-KVLVLEKG~~  468 (720)
                      +||||||||++||++|+.|+++ |+ +|+|+||...
T Consensus         2 ~~V~IvGaG~aGl~~A~~L~~~-Gi~~V~V~Er~~~   36 (288)
T d3c96a1           2 IDILIAGAGIGGLSCALALHQA-GIGKVTLLESSSE   36 (288)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHT-TCSEEEEEESSSS
T ss_pred             CEEEEECcCHHHHHHHHHHHhC-CCCeEEEEeCCCC
Confidence            5999999999999999999999 95 9999999854

>d2gmha1 c.3.1.2 (A:4-236,A:336-482) Electron transfer flavoprotein-ubiquinone oxidoreductase, EFT-QO {Pig (Sus scrofa) [TaxId: 9823]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Electron transfer flavoprotein-ubiquinone oxidoreductase, EFT-QO
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=98.59  E-value=1.5e-08  Score=107.38  Aligned_cols=38  Identities=37%  Similarity=0.554  Sum_probs=34.4

Q ss_pred             CCcccEEEECCcHHHHHHHHHHHh------cCCCcEEEEccCCCC
Q psy14408        431 GDCFDIIIVGASAAGCVLANRLSE------VSSLKVLLIEAGGDT  469 (720)
Q Consensus       431 d~eyDVVIIGSGiAGLvAA~~LAe------a~G~KVLVLEKG~~~  469 (720)
                      .++|||||||||++|++||++||+      + |++|+||||+..+
T Consensus        30 ~~e~DViIVGgGPAGlsaA~~LA~l~~~~~~-Gl~VlllEK~~~p   73 (380)
T d2gmha1          30 AEEADVVIVGAGPAGLSAATRLKQLAAQHEK-DLRVCLVEKAAHI   73 (380)
T ss_dssp             EEECSEEEECCSHHHHHHHHHHHHHHHHTTC-CCCEEEECSSSST
T ss_pred             cccCCEEEECCCHHHHHHHHHHHhhhhhhcC-CCEEEEEcCCCCC
Confidence            357999999999999999999997      6 9999999999654

>d3lada1 c.3.1.5 (A:1-158,A:278-348) Dihydrolipoamide dehydrogenase {Azotobacter vinelandii [TaxId: 354]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Azotobacter vinelandii [TaxId: 354]

Probab=98.59  E-value=1.3e-08  Score=96.95  Aligned_cols=35  Identities=37%  Similarity=0.562  Sum_probs=33.1

Q ss_pred             CcccEEEECCcHHHHHHHHHHHhcCCCcEEEEccCC
Q psy14408        432 DCFDIIIVGASAAGCVLANRLSEVSSLKVLLIEAGG  467 (720)
Q Consensus       432 ~eyDVVIIGSGiAGLvAA~~LAea~G~KVLVLEKG~  467 (720)
                      ++|||||||||.+||+||++||+. |+||+|||+..
T Consensus         2 ~kYDviIIGgGpAGl~aA~~aar~-G~~V~viE~~~   36 (229)
T d3lada1           2 QKFDVIVIGAGPGGYVAAIKSAQL-GLKTALIEKYK   36 (229)
T ss_dssp             CCCSEEEECCSHHHHHHHHHHHHH-TCCEEEEECCB
T ss_pred             CcCCEEEECcCHHHHHHHHHHHHC-CCeEEEEeccc
Confidence            479999999999999999999999 99999999974

>d1dxla1 c.3.1.5 (A:4-152,A:276-347) Dihydrolipoamide dehydrogenase {Garden pea (Pisum sativum) [TaxId: 3888]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Garden pea (Pisum sativum) [TaxId: 3888]

Probab=98.58  E-value=1.8e-08  Score=96.31  Aligned_cols=38  Identities=29%  Similarity=0.451  Sum_probs=34.8

Q ss_pred             CcccEEEECCcHHHHHHHHHHHhcCCCcEEEEccCCCCC
Q psy14408        432 DCFDIIIVGASAAGCVLANRLSEVSSLKVLLIEAGGDTP  470 (720)
Q Consensus       432 ~eyDVVIIGSGiAGLvAA~~LAea~G~KVLVLEKG~~~~  470 (720)
                      ++|||||||||.+|++||++|++. |+||+|||++...+
T Consensus         2 ~~yDvvVIGgGpaGl~aA~~aa~~-G~kV~vie~~~~~G   39 (221)
T d1dxla1           2 DENDVVIIGGGPGGYVAAIKAAQL-GFKTTCIEKRGALG   39 (221)
T ss_dssp             CCCCEEEECCSHHHHHHHHHHHHH-TCCEEEEECSSSSC
T ss_pred             CcCCEEEECCCHHHHHHHHHHHHC-CCcEEEEEecCCCC
Confidence            479999999999999999999999 99999999986543

>d1i8ta1 c.4.1.3 (A:1-244,A:314-367) UDP-galactopyranose mutase, N-terminal domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: UDP-galactopyranose mutase, N-terminal domain
domain: UDP-galactopyranose mutase, N-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=98.57  E-value=1.3e-08  Score=103.85  Aligned_cols=38  Identities=39%  Similarity=0.531  Sum_probs=35.4

Q ss_pred             ccEEEECCcHHHHHHHHHHHhcCCCcEEEEccCCCCCCC
Q psy14408        434 FDIIIVGASAAGCVLANRLSEVSSLKVLLIEAGGDTPIH  472 (720)
Q Consensus       434 yDVVIIGSGiAGLvAA~~LAea~G~KVLVLEKG~~~~~s  472 (720)
                      +||||||||++||+||++|+++ |++|+||||..+.++.
T Consensus         2 ~dv~IIGaG~sGl~~A~~L~~~-g~~V~iiEk~~~iGG~   39 (298)
T d1i8ta1           2 YDYIIVGSGLFGAVCANELKKL-NKKVLVIEKRNHIGGN   39 (298)
T ss_dssp             EEEEEECCSHHHHHHHHHHGGG-TCCEEEECSSSSSSGG
T ss_pred             ccEEEECCcHHHHHHHHHHHhC-CCcEEEEECCCCcccc
Confidence            6999999999999999999999 9999999999877654

>d1seza1 c.3.1.2 (A:13-329,A:442-497) Protoporphyrinogen oxidase {Tobacco (Nicotiana tabacum) [TaxId: 4097]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Protoporphyrinogen oxidase
species: Tobacco (Nicotiana tabacum) [TaxId: 4097]

Probab=98.56  E-value=1.8e-08  Score=96.09  Aligned_cols=37  Identities=27%  Similarity=0.392  Sum_probs=34.1

Q ss_pred             cEEEECCcHHHHHHHHHHHhcCCCcEEEEccCCCCCCC
Q psy14408        435 DIIIVGASAAGCVLANRLSEVSSLKVLLIEAGGDTPIH  472 (720)
Q Consensus       435 DVVIIGSGiAGLvAA~~LAea~G~KVLVLEKG~~~~~s  472 (720)
                      .|||||||++||+||++|+++ |++|+||||+...++.
T Consensus         3 kV~IIGaG~aGL~aA~~La~~-G~~V~vlE~~~~~GG~   39 (373)
T d1seza1           3 RVAVIGAGVSGLAAAYKLKIH-GLNVTVFEAEGKAGGK   39 (373)
T ss_dssp             EEEEECCSHHHHHHHHHHHTT-SCEEEEECSSSSSCSS
T ss_pred             EEEEECcCHHHHHHHHHHHhC-CCCEEEEeCCCCCcCc
Confidence            599999999999999999999 9999999998877553

>d1v59a1 c.3.1.5 (A:1-160,A:283-355) Dihydrolipoamide dehydrogenase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=98.53  E-value=1.6e-08  Score=97.12  Aligned_cols=38  Identities=24%  Similarity=0.481  Sum_probs=34.4

Q ss_pred             CCcccEEEECCcHHHHHHHHHHHhcCCCcEEEEccCCCC
Q psy14408        431 GDCFDIIIVGASAAGCVLANRLSEVSSLKVLLIEAGGDT  469 (720)
Q Consensus       431 d~eyDVVIIGSGiAGLvAA~~LAea~G~KVLVLEKG~~~  469 (720)
                      ..+|||||||||++|++||.+||+. |+||+|||+....
T Consensus         3 ~~~yDviVIG~GpAGl~aA~~aa~~-G~kV~lie~~~~~   40 (233)
T d1v59a1           3 NKSHDVVIIGGGPAGYVAAIKAAQL-GFNTACVEKRGKL   40 (233)
T ss_dssp             EEEEEEEEECCSHHHHHHHHHHHHT-TCCEEEEESSSSS
T ss_pred             CcccCEEEECCCHHHHHHHHHHHHC-CCcEEEEEecCCc
Confidence            3579999999999999999999999 9999999987543

>d1c0pa1 c.4.1.2 (A:999-1193,A:1289-1361) D-aminoacid oxidase, N-terminal domain {Rhodotorula gracilis [TaxId: 5286]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: D-aminoacid oxidase, N-terminal domain
domain: D-aminoacid oxidase, N-terminal domain
species: Rhodotorula gracilis [TaxId: 5286]

Probab=98.53  E-value=3.5e-08  Score=94.67  Aligned_cols=36  Identities=14%  Similarity=0.167  Sum_probs=32.8

Q ss_pred             CcccEEEECCcHHHHHHHHHHHhcCCCcEEEEccCCC
Q psy14408        432 DCFDIIIVGASAAGCVLANRLSEVSSLKVLLIEAGGD  468 (720)
Q Consensus       432 ~eyDVVIIGSGiAGLvAA~~LAea~G~KVLVLEKG~~  468 (720)
                      .+.+|||||||++||+||++|+++ |++|+||||+..
T Consensus         5 ~~~kVvVIGaGiaGl~~A~~L~~~-G~~V~vier~~~   40 (268)
T d1c0pa1           5 SQKRVVVLGSGVIGLSSALILARK-GYSVHILARDLP   40 (268)
T ss_dssp             CSCEEEEECCSHHHHHHHHHHHHT-TCEEEEEESSCT
T ss_pred             CCCcEEEECccHHHHHHHHHHHHC-CCCEEEEeCCCC
Confidence            345899999999999999999999 999999999753

>d1ojta1 c.3.1.5 (A:117-275,A:401-470) Dihydrolipoamide dehydrogenase {Neisseria meningitidis [TaxId: 487]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Neisseria meningitidis [TaxId: 487]

Probab=98.53  E-value=1.7e-08  Score=98.09  Aligned_cols=38  Identities=21%  Similarity=0.366  Sum_probs=34.7

Q ss_pred             CCcccEEEECCcHHHHHHHHHHHhcCCCcEEEEccCCCC
Q psy14408        431 GDCFDIIIVGASAAGCVLANRLSEVSSLKVLLIEAGGDT  469 (720)
Q Consensus       431 d~eyDVVIIGSGiAGLvAA~~LAea~G~KVLVLEKG~~~  469 (720)
                      +.+|||||||||++||+||.+|++. |+||+||||+...
T Consensus         4 ~~dyDviIIG~GPaGlsaA~~aa~~-G~~V~viE~~~~~   41 (229)
T d1ojta1           4 DAEYDVVVLGGGPGGYSAAFAAADE-GLKVAIVERYKTL   41 (229)
T ss_dssp             EEEEEEEEECCSHHHHHHHHHHHHT-TCCEEEEESSSCS
T ss_pred             CCccCEEEECcCHHHHHHHHHHHHC-CCeEEEEeccCCC
Confidence            4579999999999999999999999 9999999998543

>d1h6va1 c.3.1.5 (A:10-170,A:293-366) Mammalian thioredoxin reductase {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Mammalian thioredoxin reductase
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=98.52  E-value=2.4e-08  Score=96.67  Aligned_cols=36  Identities=28%  Similarity=0.469  Sum_probs=33.6

Q ss_pred             cccEEEECCcHHHHHHHHHHHhcCCCcEEEEccCCCC
Q psy14408        433 CFDIIIVGASAAGCVLANRLSEVSSLKVLLIEAGGDT  469 (720)
Q Consensus       433 eyDVVIIGSGiAGLvAA~~LAea~G~KVLVLEKG~~~  469 (720)
                      +|||||||||.+|++||++||+. |+||+|||++...
T Consensus         3 dYDviVIG~GpaGl~aA~~aa~~-G~kV~viE~~~~~   38 (235)
T d1h6va1           3 DFDLIIIGGGSGGLAAAKEAAKF-DKKVMVLDFVTPT   38 (235)
T ss_dssp             SEEEEEECCSHHHHHHHHHHGGG-CCCEEEECCCCCC
T ss_pred             cCCEEEECCCHHHHHHHHHHHHC-CCeEEEEeccCCC
Confidence            68999999999999999999999 9999999998543

>d1gesa1 c.3.1.5 (A:3-146,A:263-335) Glutathione reductase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Glutathione reductase
species: Escherichia coli [TaxId: 562]

Probab=98.45  E-value=4.8e-08  Score=93.59  Aligned_cols=33  Identities=33%  Similarity=0.455  Sum_probs=32.0

Q ss_pred             cccEEEECCcHHHHHHHHHHHhcCCCcEEEEccC
Q psy14408        433 CFDIIIVGASAAGCVLANRLSEVSSLKVLLIEAG  466 (720)
Q Consensus       433 eyDVVIIGSGiAGLvAA~~LAea~G~KVLVLEKG  466 (720)
                      +|||||||||.+|+.||.+|++. |+||+||||+
T Consensus         2 ~yDvvVIG~G~aG~~aA~~a~~~-G~kV~iiE~~   34 (217)
T d1gesa1           2 HYDYIAIGGGSGGIASINRAAMY-GQKCALIEAK   34 (217)
T ss_dssp             EEEEEEECCSHHHHHHHHHHHTT-TCCEEEEESS
T ss_pred             cCCEEEECCCHHHHHHHHHHHHC-CCEEEEEecc
Confidence            69999999999999999999999 9999999997

>d1ebda1 c.3.1.5 (A:7-154,A:272-346) Dihydrolipoamide dehydrogenase {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=98.44  E-value=5.6e-08  Score=92.58  Aligned_cols=35  Identities=31%  Similarity=0.466  Sum_probs=32.8

Q ss_pred             CcccEEEECCcHHHHHHHHHHHhcCCCcEEEEccCC
Q psy14408        432 DCFDIIIVGASAAGCVLANRLSEVSSLKVLLIEAGG  467 (720)
Q Consensus       432 ~eyDVVIIGSGiAGLvAA~~LAea~G~KVLVLEKG~  467 (720)
                      .+|||||||||.+|++||.+|++. |+||+||||+.
T Consensus         2 ~~~DviVIG~GpaGl~aA~~aar~-G~kV~vIEk~~   36 (223)
T d1ebda1           2 IETETLVVGAGPGGYVAAIRAAQL-GQKVTIVEKGN   36 (223)
T ss_dssp             EECSEEEECCSHHHHHHHHHHHHT-TCCEEEEESSC
T ss_pred             ccCCEEEECCCHHHHHHHHHHHHC-CCEEEEEecCC
Confidence            368999999999999999999999 99999999973

>d3lada2 c.3.1.5 (A:159-277) Dihydrolipoamide dehydrogenase {Azotobacter vinelandii [TaxId: 354]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Azotobacter vinelandii [TaxId: 354]

Probab=98.39  E-value=1.1e-06  Score=78.05  Aligned_cols=32  Identities=22%  Similarity=0.341  Sum_probs=30.7

Q ss_pred             cEEEECCcHHHHHHHHHHHhcCCCcEEEEccCC
Q psy14408        435 DIIIVGASAAGCVLANRLSEVSSLKVLLIEAGG  467 (720)
Q Consensus       435 DVVIIGSGiAGLvAA~~LAea~G~KVLVLEKG~  467 (720)
                      .++|||||..|+-+|..|++. |.+|+|+|+..
T Consensus        24 ~i~IiG~G~ig~E~A~~l~~~-G~~Vtiv~~~~   55 (119)
T d3lada2          24 KLGVIGAGVIGLELGSVWARL-GAEVTVLEAMD   55 (119)
T ss_dssp             EEEEECCSHHHHHHHHHHHHT-TCEEEEEESSS
T ss_pred             eEEEECCChHHHHHHHHHHHc-CCceEEEEeec
Confidence            799999999999999999999 99999999884

>d3grsa1 c.3.1.5 (A:18-165,A:291-363) Glutathione reductase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Glutathione reductase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.36  E-value=1.2e-07  Score=90.65  Aligned_cols=34  Identities=21%  Similarity=0.501  Sum_probs=32.4

Q ss_pred             cccEEEECCcHHHHHHHHHHHhcCCCcEEEEccCC
Q psy14408        433 CFDIIIVGASAAGCVLANRLSEVSSLKVLLIEAGG  467 (720)
Q Consensus       433 eyDVVIIGSGiAGLvAA~~LAea~G~KVLVLEKG~  467 (720)
                      +|||||||||.+|+.||.+|++. |+||+|||++.
T Consensus         3 ~yDviIIG~GpaG~~aA~~aar~-G~kV~vIEk~~   36 (221)
T d3grsa1           3 SYDYLVIGGGSGGLASARRAAEL-GARAAVVESHK   36 (221)
T ss_dssp             ECSEEEECCSHHHHHHHHHHHHT-TCCEEEEESSC
T ss_pred             ccCEEEECCCHHHHHHHHHHHHC-CCEEEEEeccC
Confidence            68999999999999999999999 99999999973

>d1fl2a1 c.3.1.5 (A:212-325,A:452-521) Alkyl hydroperoxide reductase subunit F (AhpF), C-terminal domains {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Alkyl hydroperoxide reductase subunit F (AhpF), C-terminal domains
species: Escherichia coli [TaxId: 562]

Probab=98.36  E-value=9.6e-08  Score=88.72  Aligned_cols=33  Identities=24%  Similarity=0.426  Sum_probs=31.3

Q ss_pred             cccEEEECCcHHHHHHHHHHHhcCCCcEEEEccC
Q psy14408        433 CFDIIIVGASAAGCVLANRLSEVSSLKVLLIEAG  466 (720)
Q Consensus       433 eyDVVIIGSGiAGLvAA~~LAea~G~KVLVLEKG  466 (720)
                      .|||||||||.+|+.||.+|++. |++|+|||+.
T Consensus         1 ~yDViIIGgGpaGl~AAi~aar~-G~~v~iie~~   33 (184)
T d1fl2a1           1 AYDVLIVGSGPAGAAAAIYSARK-GIRTGLMGER   33 (184)
T ss_dssp             CEEEEEECCSHHHHHHHHHHHTT-TCCEEEECSS
T ss_pred             CCcEEEECcCHHHHHHHHHHHHc-CCeEEEEEEe
Confidence            38999999999999999999999 9999999974

>d1lvla1 c.3.1.5 (A:1-150,A:266-335) Dihydrolipoamide dehydrogenase {Pseudomonas putida [TaxId: 303]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Pseudomonas putida [TaxId: 303]

Probab=98.34  E-value=1.3e-07  Score=91.03  Aligned_cols=35  Identities=23%  Similarity=0.396  Sum_probs=33.2

Q ss_pred             CCcccEEEECCcHHHHHHHHHHHhcCCCcEEEEccC
Q psy14408        431 GDCFDIIIVGASAAGCVLANRLSEVSSLKVLLIEAG  466 (720)
Q Consensus       431 d~eyDVVIIGSGiAGLvAA~~LAea~G~KVLVLEKG  466 (720)
                      ..++|+||||||.+|+.||.+|++. |+||+|||++
T Consensus         3 ~~~~DlvVIG~GpaGl~aA~~aa~~-G~~V~liE~~   37 (220)
T d1lvla1           3 TIQTTLLIIGGGPGGYVAAIRAGQL-GIPTVLVEGQ   37 (220)
T ss_dssp             CEECSEEEECCSHHHHHHHHHHHHH-TCCEEEECSS
T ss_pred             ccccCEEEECCCHHHHHHHHHHHHC-CCcEEEEecC
Confidence            4578999999999999999999999 9999999987

>d1ebda2 c.3.1.5 (A:155-271) Dihydrolipoamide dehydrogenase {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=98.34  E-value=1.7e-06  Score=76.13  Aligned_cols=32  Identities=22%  Similarity=0.505  Sum_probs=30.8

Q ss_pred             cEEEECCcHHHHHHHHHHHhcCCCcEEEEccCC
Q psy14408        435 DIIIVGASAAGCVLANRLSEVSSLKVLLIEAGG  467 (720)
Q Consensus       435 DVVIIGSGiAGLvAA~~LAea~G~KVLVLEKG~  467 (720)
                      .|+|||||..|+-+|..|++. |.+|+|+|+++
T Consensus        24 ~v~IiGgG~ig~E~A~~l~~~-G~~Vtlve~~~   55 (117)
T d1ebda2          24 SLVVIGGGYIGIELGTAYANF-GTKVTILEGAG   55 (117)
T ss_dssp             EEEEECCSHHHHHHHHHHHHT-TCEEEEEESSS
T ss_pred             eEEEECCCccceeeeeeeccc-ccEEEEEEecc
Confidence            799999999999999999999 99999999984

>d1mo9a2 c.3.1.5 (A:193-313) NADH-dependent 2-ketopropyl coenzyme M oxidoreductase/carboxylase {Xanthobacter sp., py2 [TaxId: 35809]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: NADH-dependent 2-ketopropyl coenzyme M oxidoreductase/carboxylase
species: Xanthobacter sp., py2 [TaxId: 35809]

Probab=98.32  E-value=3.1e-06  Score=74.44  Aligned_cols=48  Identities=19%  Similarity=0.288  Sum_probs=38.1

Q ss_pred             cCCCeEEEcCeEEEEEEEccCCcEEEEEEEecCCcEEEEEcCcEEEEccC
Q psy14408        646 KRTNLYVLKRSKVTKVIINDQNVATGVEYVNSKGETVRVTANKEVILTAG  695 (720)
Q Consensus       646 e~aGVkIi~gt~VtkIl~e~gGrAtGV~v~dt~G~e~tIkAkK~VVVAAG  695 (720)
                      ++.|+++++++.|++|+.++++++.++.... .+.+.+|.|+ .||+|+|
T Consensus        74 ~~~gI~v~~~~~v~~i~~~~~~~~~~~~~~~-~~~~~~i~~D-~Vi~a~G  121 (121)
T d1mo9a2          74 KEQGMEIISGSNVTRIEEDANGRVQAVVAMT-PNGEMRIETD-FVFLGLG  121 (121)
T ss_dssp             HHTTCEEESSCEEEEEEECTTSBEEEEEEEE-TTEEEEEECS-CEEECCC
T ss_pred             hccccEEEcCCEEEEEEecCCceEEEEEEEe-CCCCEEEEcC-EEEEEEC
Confidence            3679999999999999987567777776655 3445689998 5999987

>d1gesa2 c.3.1.5 (A:147-262) Glutathione reductase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Glutathione reductase
species: Escherichia coli [TaxId: 562]

Probab=98.31  E-value=9.3e-07  Score=78.17  Aligned_cols=32  Identities=25%  Similarity=0.319  Sum_probs=30.5

Q ss_pred             cEEEECCcHHHHHHHHHHHhcCCCcEEEEccCC
Q psy14408        435 DIIIVGASAAGCVLANRLSEVSSLKVLLIEAGG  467 (720)
Q Consensus       435 DVVIIGSGiAGLvAA~~LAea~G~KVLVLEKG~  467 (720)
                      .|||||||..|+-+|..|++. |.+|+|+|+++
T Consensus        23 ~vvIiGgG~ig~E~A~~l~~~-G~~Vtlve~~~   54 (116)
T d1gesa2          23 RVAVVGAGYIGVELGGVINGL-GAKTHLFEMFD   54 (116)
T ss_dssp             EEEEECCSHHHHHHHHHHHHT-TCEEEEECSSS
T ss_pred             EEEEECCChhhHHHHHHhhcc-ccEEEEEeecc
Confidence            699999999999999999999 99999999984

>d1q1ra2 c.3.1.5 (A:115-247) Putidaredoxin reductase {Pseudomonas putida [TaxId: 303]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Putidaredoxin reductase
species: Pseudomonas putida [TaxId: 303]

Probab=98.30  E-value=1.8e-06  Score=78.17  Aligned_cols=32  Identities=16%  Similarity=0.407  Sum_probs=30.8

Q ss_pred             cEEEECCcHHHHHHHHHHHhcCCCcEEEEccCC
Q psy14408        435 DIIIVGASAAGCVLANRLSEVSSLKVLLIEAGG  467 (720)
Q Consensus       435 DVVIIGSGiAGLvAA~~LAea~G~KVLVLEKG~  467 (720)
                      .|+|||||..|+-+|..|++. |.+|+|+|+++
T Consensus        37 ~v~VIGgG~iG~E~A~~l~~~-g~~Vtvie~~~   68 (133)
T d1q1ra2          37 RLVVIGGGYIGLEVAATAIKA-NMHVTLLDTAA   68 (133)
T ss_dssp             EEEEECCSHHHHHHHHHHHHT-TCEEEEECSSS
T ss_pred             EEEEECCchHHHHHHHHHHhh-Ccceeeeeecc
Confidence            799999999999999999999 99999999984

>d1v59a2 c.3.1.5 (A:161-282) Dihydrolipoamide dehydrogenase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=98.30  E-value=3.3e-06  Score=75.34  Aligned_cols=32  Identities=22%  Similarity=0.334  Sum_probs=30.7

Q ss_pred             cEEEECCcHHHHHHHHHHHhcCCCcEEEEccCC
Q psy14408        435 DIIIVGASAAGCVLANRLSEVSSLKVLLIEAGG  467 (720)
Q Consensus       435 DVVIIGSGiAGLvAA~~LAea~G~KVLVLEKG~  467 (720)
                      .+||||||..|+-+|..|++. |.+|+|+|+++
T Consensus        25 ~~vIiG~G~ig~E~A~~l~~l-G~~Vtii~~~~   56 (122)
T d1v59a2          25 RLTIIGGGIIGLEMGSVYSRL-GSKVTVVEFQP   56 (122)
T ss_dssp             EEEEECCSHHHHHHHHHHHHT-TCEEEEECSSS
T ss_pred             eEEEECCCchHHHHHHHHHhh-CcceeEEEecc
Confidence            799999999999999999999 99999999984

>d2bi7a1 c.4.1.3 (A:2-247,A:317-384) UDP-galactopyranose mutase, N-terminal domain {Klebsiella pneumoniae [TaxId: 573]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: UDP-galactopyranose mutase, N-terminal domain
domain: UDP-galactopyranose mutase, N-terminal domain
species: Klebsiella pneumoniae [TaxId: 573]

Probab=98.26  E-value=2.1e-07  Score=95.64  Aligned_cols=37  Identities=30%  Similarity=0.454  Sum_probs=34.5

Q ss_pred             cEEEECCcHHHHHHHHHHHhcCCCcEEEEccCCCCCCC
Q psy14408        435 DIIIVGASAAGCVLANRLSEVSSLKVLLIEAGGDTPIH  472 (720)
Q Consensus       435 DVVIIGSGiAGLvAA~~LAea~G~KVLVLEKG~~~~~s  472 (720)
                      .|||||||++||+||++|+++ |++|+||||..+.++.
T Consensus         4 KI~IIGaG~sGL~aA~~L~k~-G~~V~viEk~~~iGG~   40 (314)
T d2bi7a1           4 KILIVGAGFSGAVIGRQLAEK-GHQVHIIDQRDHIGGN   40 (314)
T ss_dssp             EEEEECCSHHHHHHHHHHHTT-TCEEEEEESSSSSSGG
T ss_pred             EEEEECCcHHHHHHHHHHHhC-CCCEEEEECCCCCcCe
Confidence            699999999999999999999 9999999999888654

>d1pn0a1 c.3.1.2 (A:1-240,A:342-461) Phenol hydroxylase {Soil-living yeast (Trichosporon cutaneum) [TaxId: 5554]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Phenol hydroxylase
species: Soil-living yeast (Trichosporon cutaneum) [TaxId: 5554]

Probab=98.25  E-value=2.5e-07  Score=93.06  Aligned_cols=38  Identities=39%  Similarity=0.540  Sum_probs=32.7

Q ss_pred             CcccEEEECCcHHHHHHHHHHHh----cCCCcEEEEccCCCC
Q psy14408        432 DCFDIIIVGASAAGCVLANRLSE----VSSLKVLLIEAGGDT  469 (720)
Q Consensus       432 ~eyDVVIIGSGiAGLvAA~~LAe----a~G~KVLVLEKG~~~  469 (720)
                      ..|||||||||++||++|..||+    +.|++|+||||....
T Consensus         6 ~~yDV~IvGaG~aGl~lA~~La~~~~~~~G~~v~vlEr~~~~   47 (360)
T d1pn0a1           6 SYCDVLIVGAGPAGLMAARVLSEYVRQKPDLKVRIIDKRSTK   47 (360)
T ss_dssp             EEEEEEEECCSHHHHHHHHHHHHHHHHSTTCCEEEECSSSSC
T ss_pred             CCCCEEEECcCHHHHHHHHHHHhcccccCCCcEEEEcCCCCC
Confidence            35899999999999999999973    239999999997654

>d1onfa1 c.3.1.5 (A:1-153,A:271-376) Glutathione reductase {Plasmodium falciparum [TaxId: 5833]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Glutathione reductase
species: Plasmodium falciparum [TaxId: 5833]

Probab=98.22  E-value=3.4e-07  Score=90.69  Aligned_cols=32  Identities=31%  Similarity=0.605  Sum_probs=31.3

Q ss_pred             ccEEEECCcHHHHHHHHHHHhcCCCcEEEEccC
Q psy14408        434 FDIIIVGASAAGCVLANRLSEVSSLKVLLIEAG  466 (720)
Q Consensus       434 yDVVIIGSGiAGLvAA~~LAea~G~KVLVLEKG  466 (720)
                      |||||||||.+|++||.+||+. |+||+||||+
T Consensus         2 yDviVIG~G~aG~~aA~~aa~~-G~~V~liE~~   33 (259)
T d1onfa1           2 YDLIVIGGGSGGMAAARRAARH-NAKVALVEKS   33 (259)
T ss_dssp             BSEEEECCSHHHHHHHHHHHHT-TCCEEEEESS
T ss_pred             ceEEEECCCHHHHHHHHHHHHC-CCeEEEEecC
Confidence            8999999999999999999999 9999999987

>d1dxla2 c.3.1.5 (A:153-275) Dihydrolipoamide dehydrogenase {Garden pea (Pisum sativum) [TaxId: 3888]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Garden pea (Pisum sativum) [TaxId: 3888]

Probab=98.21  E-value=2.2e-06  Score=76.53  Aligned_cols=32  Identities=16%  Similarity=0.379  Sum_probs=30.8

Q ss_pred             cEEEECCcHHHHHHHHHHHhcCCCcEEEEccCC
Q psy14408        435 DIIIVGASAAGCVLANRLSEVSSLKVLLIEAGG  467 (720)
Q Consensus       435 DVVIIGSGiAGLvAA~~LAea~G~KVLVLEKG~  467 (720)
                      .++|||||+.|+-+|..|++. |.+|+|||+++
T Consensus        27 ~~viiG~G~iglE~A~~~~~~-G~~Vtvi~~~~   58 (123)
T d1dxla2          27 KLVVIGAGYIGLEMGSVWGRI-GSEVTVVEFAS   58 (123)
T ss_dssp             EEEESCCSHHHHHHHHHHHHH-TCEEEEECSSS
T ss_pred             eEEEEccchHHHHHHHHHHhc-CCeEEEEEEcc
Confidence            799999999999999999999 99999999984

>d2voua1 c.3.1.2 (A:2-163,A:292-394) Dihydroxypyridine hydroxylase DhpH {Arthrobacter nicotinovorans [TaxId: 29320]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Dihydroxypyridine hydroxylase DhpH
species: Arthrobacter nicotinovorans [TaxId: 29320]

Probab=98.19  E-value=4.7e-07  Score=87.78  Aligned_cols=33  Identities=27%  Similarity=0.336  Sum_probs=31.1

Q ss_pred             cEEEECCcHHHHHHHHHHHhcCCCcEEEEccCCC
Q psy14408        435 DIIIVGASAAGCVLANRLSEVSSLKVLLIEAGGD  468 (720)
Q Consensus       435 DVVIIGSGiAGLvAA~~LAea~G~KVLVLEKG~~  468 (720)
                      .|||||||++||+||+.|+++ |++|+||||...
T Consensus         6 kV~IiGaG~aGl~~A~~L~~~-G~~v~v~Er~~~   38 (265)
T d2voua1           6 RIAVVGGSISGLTAALMLRDA-GVDVDVYERSPQ   38 (265)
T ss_dssp             EEEEECCSHHHHHHHHHHHHT-TCEEEEECSSSS
T ss_pred             cEEEECcCHHHHHHHHHHHHC-CCCEEEEeCCCC
Confidence            799999999999999999999 999999999743

>d1ojta2 c.3.1.5 (A:276-400) Dihydrolipoamide dehydrogenase {Neisseria meningitidis [TaxId: 487]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Neisseria meningitidis [TaxId: 487]

Probab=98.18  E-value=3.4e-06  Score=75.85  Aligned_cols=32  Identities=16%  Similarity=0.326  Sum_probs=30.7

Q ss_pred             cEEEECCcHHHHHHHHHHHhcCCCcEEEEccCC
Q psy14408        435 DIIIVGASAAGCVLANRLSEVSSLKVLLIEAGG  467 (720)
Q Consensus       435 DVVIIGSGiAGLvAA~~LAea~G~KVLVLEKG~  467 (720)
                      .++|||||+.|+=+|..|++. |.+|+|+|++.
T Consensus        28 ~vvIiGgG~IG~E~A~~~~~~-G~~Vtive~~~   59 (125)
T d1ojta2          28 KLLIIGGGIIGLEMGTVYSTL-GSRLDVVEMMD   59 (125)
T ss_dssp             EEEEESCSHHHHHHHHHHHHH-TCEEEEECSSS
T ss_pred             eEEEECCCHHHHHHHHHhhcC-CCEEEEEEeec
Confidence            799999999999999999999 99999999984

>d1lvla2 c.3.1.5 (A:151-265) Dihydrolipoamide dehydrogenase {Pseudomonas putida [TaxId: 303]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Pseudomonas putida [TaxId: 303]

Probab=98.17  E-value=2.3e-06  Score=75.25  Aligned_cols=32  Identities=22%  Similarity=0.371  Sum_probs=30.7

Q ss_pred             cEEEECCcHHHHHHHHHHHhcCCCcEEEEccCC
Q psy14408        435 DIIIVGASAAGCVLANRLSEVSSLKVLLIEAGG  467 (720)
Q Consensus       435 DVVIIGSGiAGLvAA~~LAea~G~KVLVLEKG~  467 (720)
                      .|+|||||..|+-+|..|++. |.+|+|+|+++
T Consensus        23 ~vvIiGgG~~G~E~A~~l~~~-g~~Vtlve~~~   54 (115)
T d1lvla2          23 HLVVVGGGYIGLELGIAYRKL-GAQVSVVEARE   54 (115)
T ss_dssp             EEEEECCSHHHHHHHHHHHHH-TCEEEEECSSS
T ss_pred             eEEEECCCHHHHHHHHHHhhc-ccceEEEeeec
Confidence            799999999999999999999 99999999984

>d1trba1 c.3.1.5 (A:1-118,A:245-316) Thioredoxin reductase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Thioredoxin reductase
species: Escherichia coli [TaxId: 562]

Probab=98.16  E-value=3.9e-07  Score=85.81  Aligned_cols=36  Identities=22%  Similarity=0.314  Sum_probs=33.0

Q ss_pred             CcccEEEECCcHHHHHHHHHHHhcCCCcEEEEccCCC
Q psy14408        432 DCFDIIIVGASAAGCVLANRLSEVSSLKVLLIEAGGD  468 (720)
Q Consensus       432 ~eyDVVIIGSGiAGLvAA~~LAea~G~KVLVLEKG~~  468 (720)
                      ...||||||||.+||.||++|++. |++|+||||+..
T Consensus         4 k~~dVvIIGGGpaGl~AA~~~ar~-g~~v~iie~~~~   39 (190)
T d1trba1           4 KHSKLLILGSGPAGYTAAVYAARA-NLQPVLITGMEK   39 (190)
T ss_dssp             EEEEEEEECCSHHHHHHHHHHHTT-TCCCEEECCSST
T ss_pred             CCCcEEEECCCHHHHHHHHHHHHc-CCceEEEEeecc
Confidence            356999999999999999999999 999999998754

>d1ps9a3 c.4.1.1 (A:331-465,A:628-671) 2,4-dienoyl-CoA reductase, middle domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: N-terminal domain of adrenodoxin reductase-like
domain: 2,4-dienoyl-CoA reductase, middle domain
species: Escherichia coli [TaxId: 562]

Probab=98.13  E-value=1.1e-06  Score=84.08  Aligned_cols=38  Identities=24%  Similarity=0.255  Sum_probs=34.3

Q ss_pred             cccEEEECCcHHHHHHHHHHHhcCCCcEEEEccCCCCCC
Q psy14408        433 CFDIIIVGASAAGCVLANRLSEVSSLKVLLIEAGGDTPI  471 (720)
Q Consensus       433 eyDVVIIGSGiAGLvAA~~LAea~G~KVLVLEKG~~~~~  471 (720)
                      ..+|+|||||++||.||+.|+++ |++|+|+||....++
T Consensus        43 ~k~V~IIGaGPAGL~AA~~la~~-G~~Vtl~E~~~~~GG   80 (179)
T d1ps9a3          43 KKNLAVVGAGPAGLAFAINAAAR-GHQVTLFDAHSEIGG   80 (179)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHTT-TCEEEEEESSSSSCT
T ss_pred             CcEEEEECccHHHHHHHHHHHhh-ccceEEEeccCccCc
Confidence            34899999999999999999999 999999999876644

>d1gtea4 c.4.1.1 (A:184-287,A:441-532) Dihydropyrimidine dehydrogenase, domain 2 {Pig (Sus scrofa) [TaxId: 9823]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: N-terminal domain of adrenodoxin reductase-like
domain: Dihydropyrimidine dehydrogenase, domain 2
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=98.11  E-value=1e-06  Score=82.13  Aligned_cols=36  Identities=19%  Similarity=0.217  Sum_probs=32.5

Q ss_pred             cEEEECCcHHHHHHHHHHHhcCCCc-EEEEccCCCCCC
Q psy14408        435 DIIIVGASAAGCVLANRLSEVSSLK-VLLIEAGGDTPI  471 (720)
Q Consensus       435 DVVIIGSGiAGLvAA~~LAea~G~K-VLVLEKG~~~~~  471 (720)
                      -|+|||||++||.||.+|+++ |++ |+|+||++...+
T Consensus         6 kVaIIGaGpaGl~aA~~l~~~-G~~~V~v~E~~~~~gg   42 (196)
T d1gtea4           6 KIALLGAGPASISCASFLARL-GYSDITIFEKQEYVGG   42 (196)
T ss_dssp             CEEEECCSHHHHHHHHHHHHT-TCCCEEEEESSSSCST
T ss_pred             EEEEECChHHHHHHHHHHHHC-CCCeEEEEEecCcccc
Confidence            799999999999999999999 985 999999876533

>d1mo9a1 c.3.1.5 (A:2-192,A:314-383) NADH-dependent 2-ketopropyl coenzyme M oxidoreductase/carboxylase {Xanthobacter sp., py2 [TaxId: 35809]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: NADH-dependent 2-ketopropyl coenzyme M oxidoreductase/carboxylase
species: Xanthobacter sp., py2 [TaxId: 35809]

Probab=98.09  E-value=1.2e-06  Score=86.73  Aligned_cols=38  Identities=21%  Similarity=0.237  Sum_probs=34.8

Q ss_pred             CCcccEEEECCcHHHHHHHHHHHhcCCCcEEEEccCCCC
Q psy14408        431 GDCFDIIIVGASAAGCVLANRLSEVSSLKVLLIEAGGDT  469 (720)
Q Consensus       431 d~eyDVVIIGSGiAGLvAA~~LAea~G~KVLVLEKG~~~  469 (720)
                      ..+|||||||||.+|+.+|..|++. |.+|+|||++...
T Consensus        40 ~k~yDvvVIGgG~aG~~aA~~~a~~-G~kv~vve~~~~l   77 (261)
T d1mo9a1          40 PREYDAIFIGGGAAGRFGSAYLRAM-GGRQLIVDRWPFL   77 (261)
T ss_dssp             CSCBSEEEECCSHHHHHHHHHHHHT-TCCEEEEESSSSS
T ss_pred             CccCCEEEECCCHHHHHHHHHHHHC-CCeEEEEeccCcc
Confidence            3589999999999999999999999 9999999998654

>d1vdca1 c.3.1.5 (A:1-117,A:244-316) Thioredoxin reductase {Mouse-ear cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Thioredoxin reductase
species: Mouse-ear cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=98.09  E-value=7.3e-07  Score=84.43  Aligned_cols=35  Identities=29%  Similarity=0.218  Sum_probs=32.5

Q ss_pred             cccEEEECCcHHHHHHHHHHHhcCCCcEEEEccCCC
Q psy14408        433 CFDIIIVGASAAGCVLANRLSEVSSLKVLLIEAGGD  468 (720)
Q Consensus       433 eyDVVIIGSGiAGLvAA~~LAea~G~KVLVLEKG~~  468 (720)
                      .+||||||||.+|+.||++|++. |++|+|+|+...
T Consensus         5 ~~~VvIIGgGpaGl~aA~~~ar~-g~~v~vie~~~~   39 (192)
T d1vdca1           5 NTRLCIVGSGPAAHTAAIYAARA-ELKPLLFEGWMA   39 (192)
T ss_dssp             EEEEEEECCSHHHHHHHHHHHHT-TCCCEEECCSSB
T ss_pred             cceEEEECCCHHHHHHHHHHHHc-CCcEEEEEeecc
Confidence            57999999999999999999999 999999998743

>d2gjca1 c.3.1.6 (A:16-326) Thiazole biosynthetic enzyme Thi4 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: Thi4-like
domain: Thiazole biosynthetic enzyme Thi4
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=98.08  E-value=1.2e-06  Score=88.92  Aligned_cols=43  Identities=30%  Similarity=0.298  Sum_probs=36.7

Q ss_pred             CCCcccEEEECCcHHHHHHHHHHHhc-CCCcEEEEccCCCCCCC
Q psy14408        430 SGDCFDIIIVGASAAGCVLANRLSEV-SSLKVLLIEAGGDTPIH  472 (720)
Q Consensus       430 ~d~eyDVVIIGSGiAGLvAA~~LAea-~G~KVLVLEKG~~~~~s  472 (720)
                      ...++||||||||++||+||++|+++ .|++|+|+||+...++.
T Consensus        47 ~~~~~~~~~~g~g~~g~~~a~~~~~~~~~~~~~~~~~~~~~~~~   90 (311)
T d2gjca1          47 KFAVSDVIIVGAGSSGLSAAYVIAKNRPDLKVCIIESSVAPGGG   90 (311)
T ss_dssp             HTTEESEEEECCSHHHHHHHHHHHHHCTTSCEEEECSSSSCCTT
T ss_pred             cccCCCEEEECCCHHHHHHHHHHHHhCCCCeEEEEEcCCCCcce
Confidence            34578999999999999999999963 49999999998776543

>d1feca1 c.3.1.5 (A:1-169,A:287-357) Trypanothione reductase {Crithidia fasciculata [TaxId: 5656]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Trypanothione reductase
species: Crithidia fasciculata [TaxId: 5656]

Probab=98.08  E-value=7.9e-07  Score=86.31  Aligned_cols=36  Identities=17%  Similarity=0.394  Sum_probs=32.1

Q ss_pred             CcccEEEECCcHHHHHHHHHHHhcCCC-cEEEEccCCC
Q psy14408        432 DCFDIIIVGASAAGCVLANRLSEVSSL-KVLLIEAGGD  468 (720)
Q Consensus       432 ~eyDVVIIGSGiAGLvAA~~LAea~G~-KVLVLEKG~~  468 (720)
                      .+|||||||||++|++||+++|+. |. +|+|+|+...
T Consensus         2 k~YDvvVIG~GpAG~~aAi~aa~~-g~k~V~vie~~~~   38 (240)
T d1feca1           2 RAYDLVVIGAGSGGLEAGWNAASL-HKKRVAVIDLQKH   38 (240)
T ss_dssp             CSEEEEEECCSHHHHHHHHHHHHH-HCCCEEEEESCSS
T ss_pred             CccCEEEECCCHHHHHHHHHHHHc-CCCEEEEEEEecc
Confidence            479999999999999999999998 75 5999998743

>d1aoga1 c.3.1.5 (A:3-169,A:287-357) Trypanothione reductase {Trypanosoma cruzi [TaxId: 5693]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Trypanothione reductase
species: Trypanosoma cruzi [TaxId: 5693]

Probab=98.06  E-value=1.3e-06  Score=83.46  Aligned_cols=34  Identities=24%  Similarity=0.446  Sum_probs=30.6

Q ss_pred             CcccEEEECCcHHHHHHHHHHHhcCCC-cEEEEccC
Q psy14408        432 DCFDIIIVGASAAGCVLANRLSEVSSL-KVLLIEAG  466 (720)
Q Consensus       432 ~eyDVVIIGSGiAGLvAA~~LAea~G~-KVLVLEKG  466 (720)
                      ..|||||||||++|++||.+||+. |. +|+|+|+.
T Consensus         2 ~~YDviIIG~GpaGl~aA~~aa~~-g~k~V~iie~~   36 (238)
T d1aoga1           2 KIFDLVVIGAGSGGLEAAWNAATL-YKKRVAVIDVQ   36 (238)
T ss_dssp             CSBSEEEECCSHHHHHHHHHHHHT-SCCCEEEEESC
T ss_pred             CccCEEEECCCHHHHHHHHHHHHc-CCCEEEEEEee
Confidence            469999999999999999999998 65 68999986

>d3grsa2 c.3.1.5 (A:166-290) Glutathione reductase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Glutathione reductase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.00  E-value=2.8e-05  Score=69.18  Aligned_cols=32  Identities=28%  Similarity=0.271  Sum_probs=30.7

Q ss_pred             cEEEECCcHHHHHHHHHHHhcCCCcEEEEccCC
Q psy14408        435 DIIIVGASAAGCVLANRLSEVSSLKVLLIEAGG  467 (720)
Q Consensus       435 DVVIIGSGiAGLvAA~~LAea~G~KVLVLEKG~  467 (720)
                      .|+|||||..|+-+|..|++. |.+|+|+|+++
T Consensus        24 ~vvIvGgG~iG~E~A~~l~~~-G~~Vtlv~~~~   55 (125)
T d3grsa2          24 RSVIVGAGYIAVEMAGILSAL-GSKTSLMIRHD   55 (125)
T ss_dssp             EEEEECCSHHHHHHHHHHHHT-TCEEEEECSSS
T ss_pred             EEEEEcCCccHHHHHHHHhcC-CcEEEEEeecc
Confidence            799999999999999999999 99999999984

>d1djqa3 c.4.1.1 (A:341-489,A:646-729) Trimethylamine dehydrogenase, middle domain {Methylophilus methylotrophus, w3a1 [TaxId: 17]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: N-terminal domain of adrenodoxin reductase-like
domain: Trimethylamine dehydrogenase, middle domain
species: Methylophilus methylotrophus, w3a1 [TaxId: 17]

Probab=98.00  E-value=2.3e-06  Score=83.33  Aligned_cols=40  Identities=25%  Similarity=0.253  Sum_probs=35.5

Q ss_pred             CCcccEEEECCcHHHHHHHHHHHhcCCCcEEEEccCCCCCC
Q psy14408        431 GDCFDIIIVGASAAGCVLANRLSEVSSLKVLLIEAGGDTPI  471 (720)
Q Consensus       431 d~eyDVVIIGSGiAGLvAA~~LAea~G~KVLVLEKG~~~~~  471 (720)
                      ....+|+|||||++|++||.+|+++ |++|+|+|+....++
T Consensus        47 ~~~k~VvIIGaGpAGl~aA~~l~~~-G~~v~l~E~~~~~GG   86 (233)
T d1djqa3          47 KNKDSVLIVGAGPSGSEAARVLMES-GYTVHLTDTAEKIGG   86 (233)
T ss_dssp             SSCCEEEEECCSHHHHHHHHHHHHT-TCEEEEECSSSSTTT
T ss_pred             cCCceEEEEcccHHHHHHHHHHHHh-ccceeeEeeccccCC
Confidence            3456999999999999999999999 999999999876643

>d1lqta2 c.4.1.1 (A:2-108,A:325-456) Ferredoxin:NADP reductase FprA {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: N-terminal domain of adrenodoxin reductase-like
domain: Ferredoxin:NADP reductase FprA
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=97.96  E-value=1.6e-06  Score=82.97  Aligned_cols=37  Identities=22%  Similarity=0.201  Sum_probs=33.3

Q ss_pred             ccEEEECCcHHHHHHHHHHHhcCC-------CcEEEEccCCCCCC
Q psy14408        434 FDIIIVGASAAGCVLANRLSEVSS-------LKVLLIEAGGDTPI  471 (720)
Q Consensus       434 yDVVIIGSGiAGLvAA~~LAea~G-------~KVLVLEKG~~~~~  471 (720)
                      +.|+|||||++||+||++|+++ |       ++|+|+||.+..++
T Consensus         3 ~~VaVIGaGpaGL~aA~~L~~~-G~~~~~~~~~V~v~E~~~~~GG   46 (239)
T d1lqta2           3 YYIAIVGSGPSAFFAAASLLKA-ADTTEDLDMAVDMLEMLPTPWG   46 (239)
T ss_dssp             EEEEEECCSHHHHHHHHHHHHH-HHHSTTCCEEEEEEESSSSCST
T ss_pred             cEEEEECcCHHHHHHHHHHHHc-CCccccCCCceEEEecCCCCCC
Confidence            5899999999999999999998 7       47999999977654

>d1feca2 c.3.1.5 (A:170-286) Trypanothione reductase {Crithidia fasciculata [TaxId: 5656]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Trypanothione reductase
species: Crithidia fasciculata [TaxId: 5656]

Probab=97.85  E-value=2.5e-05  Score=68.45  Aligned_cols=44  Identities=20%  Similarity=0.294  Sum_probs=33.5

Q ss_pred             cCCCeEEEcCeEEEEEEEccCCcEEEEEEEecCCcEEEEEcCcEEEEccC
Q psy14408        646 KRTNLYVLKRSKVTKVIINDQNVATGVEYVNSKGETVRVTANKEVILTAG  695 (720)
Q Consensus       646 e~aGVkIi~gt~VtkIl~e~gGrAtGV~v~dt~G~e~tIkAkK~VVVAAG  695 (720)
                      ++.|++|++++.|++|..+ ++.+..|.+.+  |+  ++.++ .||+|+|
T Consensus        73 ~~~GI~v~~~~~v~~i~~~-~~g~~~v~~~~--g~--~i~~D-~Vi~a~G  116 (117)
T d1feca2          73 RANGINVRTHENPAKVTKN-ADGTRHVVFES--GA--EADYD-VVMLAIG  116 (117)
T ss_dssp             HHTTEEEEETCCEEEEEEC-TTSCEEEEETT--SC--EEEES-EEEECSC
T ss_pred             hhCcEEEEcCCEEEEEEEC-CCCEEEEEECC--CC--EEEcC-EEEEecC
Confidence            4679999999999999876 33334555544  65  68898 5999998

>d1m6ia2 c.3.1.5 (A:264-400) Apoptosis-inducing factor (AIF) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Apoptosis-inducing factor (AIF)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.84  E-value=6.3e-05  Score=67.80  Aligned_cols=43  Identities=16%  Similarity=0.339  Sum_probs=33.3

Q ss_pred             cCCCeEEEcCeEEEEEEEccCCcEEEEEEEecCCcEEEEEcCcEEEEccC
Q psy14408        646 KRTNLYVLKRSKVTKVIINDQNVATGVEYVNSKGETVRVTANKEVILTAG  695 (720)
Q Consensus       646 e~aGVkIi~gt~VtkIl~e~gGrAtGV~v~dt~G~e~tIkAkK~VVVAAG  695 (720)
                      ++.|++++.++.|++|..+ ++++ .|++.  +|+  +|.|+ .||+|+|
T Consensus        94 ~~~GV~~~~~~~V~~i~~~-~~~~-~v~l~--~G~--~i~aD-~Vi~A~G  136 (137)
T d1m6ia2          94 RREGVKVMPNAIVQSVGVS-SGKL-LIKLK--DGR--KVETD-HIVAAVG  136 (137)
T ss_dssp             HTTTCEEECSCCEEEEEEE-TTEE-EEEET--TSC--EEEES-EEEECCC
T ss_pred             HhCCcEEEeCCEEEEEEec-CCEE-EEEEC--CCC--EEECC-EEEEeec
Confidence            4789999999999999877 5543 24443  464  78998 5999998

>d1cjca2 c.4.1.1 (A:6-106,A:332-460) Adrenodoxin reductase of mitochondrial p450 systems {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: N-terminal domain of adrenodoxin reductase-like
domain: Adrenodoxin reductase of mitochondrial p450 systems
species: Cow (Bos taurus) [TaxId: 9913]

Probab=97.81  E-value=6.6e-06  Score=79.09  Aligned_cols=37  Identities=27%  Similarity=0.172  Sum_probs=32.2

Q ss_pred             cEEEECCcHHHHHHHHHHHhc-CCCcEEEEccCCCCCC
Q psy14408        435 DIIIVGASAAGCVLANRLSEV-SSLKVLLIEAGGDTPI  471 (720)
Q Consensus       435 DVVIIGSGiAGLvAA~~LAea-~G~KVLVLEKG~~~~~  471 (720)
                      .|+|||||++||+||.+|+++ .|++|+|+||++.+++
T Consensus         3 kv~iIGaGpaGl~aA~~L~~~~~~~~V~v~e~~~~~gG   40 (230)
T d1cjca2           3 QICVVGSGPAGFYTAQHLLKHHSRAHVDIYEKQLVPFG   40 (230)
T ss_dssp             EEEEECCSHHHHHHHHHHHHHCSSCEEEEECSSSSSCT
T ss_pred             eEEEECccHHHHHHHHHHHhcCCCCeEEEEeCCCCCCc
Confidence            699999999999999999875 3789999999977643

>d1h6va2 c.3.1.5 (A:171-292) Mammalian thioredoxin reductase {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Mammalian thioredoxin reductase
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=97.78  E-value=0.00014  Score=64.38  Aligned_cols=31  Identities=26%  Similarity=0.325  Sum_probs=29.6

Q ss_pred             cEEEECCcHHHHHHHHHHHhcCCCcEEEEccC
Q psy14408        435 DIIIVGASAAGCVLANRLSEVSSLKVLLIEAG  466 (720)
Q Consensus       435 DVVIIGSGiAGLvAA~~LAea~G~KVLVLEKG  466 (720)
                      .++|||||..|+-+|..|++. |.+|+||++.
T Consensus        22 ~vvIIGgG~iG~E~A~~l~~l-G~~Vtii~~~   52 (122)
T d1h6va2          22 KTLVVGASYVALECAGFLAGI-GLDVTVMVRS   52 (122)
T ss_dssp             SEEEECCSHHHHHHHHHHHHT-TCCEEEEESS
T ss_pred             eEEEECCCccHHHHHHHHhhc-CCeEEEEEec
Confidence            799999999999999999999 9999999975

>d1kifa1 c.4.1.2 (A:1-194,A:288-339) D-aminoacid oxidase, N-terminal domain {Pig (Sus scrofa) [TaxId: 9823]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: D-aminoacid oxidase, N-terminal domain
domain: D-aminoacid oxidase, N-terminal domain
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=97.77  E-value=1.7e-06  Score=82.36  Aligned_cols=31  Identities=23%  Similarity=0.197  Sum_probs=28.9

Q ss_pred             cEEEECCcHHHHHHHHHHHhcCCCcEEEEccC
Q psy14408        435 DIIIVGASAAGCVLANRLSEVSSLKVLLIEAG  466 (720)
Q Consensus       435 DVVIIGSGiAGLvAA~~LAea~G~KVLVLEKG  466 (720)
                      -|+|||||++||++|++|+++ |++|+|+||.
T Consensus         2 kV~VIGaGi~GlstA~~L~~~-G~~v~v~e~~   32 (246)
T d1kifa1           2 RVVVIGAGVIGLSTALCIHER-YHSVLQPLDV   32 (246)
T ss_dssp             EEEEECCSHHHHHHHHHHHHH-HTTTSSSCEE
T ss_pred             EEEEECchHHHHHHHHHHHHC-CCCceEEeee
Confidence            399999999999999999999 9999988885

>d1aoga2 c.3.1.5 (A:170-286) Trypanothione reductase {Trypanosoma cruzi [TaxId: 5693]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Trypanothione reductase
species: Trypanosoma cruzi [TaxId: 5693]

Probab=97.60  E-value=0.00013  Score=63.99  Aligned_cols=33  Identities=18%  Similarity=0.211  Sum_probs=27.7

Q ss_pred             cEEEECCcHHHHHHHHHHHhc--CCCcEEEEccCC
Q psy14408        435 DIIIVGASAAGCVLANRLSEV--SSLKVLLIEAGG  467 (720)
Q Consensus       435 DVVIIGSGiAGLvAA~~LAea--~G~KVLVLEKG~  467 (720)
                      .++|||||..|+-+|..|++.  .|.+|+|+|+++
T Consensus        22 ~v~ivGgG~ig~E~A~~l~~l~~~~~~Vtli~~~~   56 (117)
T d1aoga2          22 RVLTVGGGFISVEFAGIFNAYKPKDGQVTLCYRGE   56 (117)
T ss_dssp             EEEEECSSHHHHHHHHHHHHHCCTTCEEEEEESSS
T ss_pred             eEEEECCcHHHHHHHHHhhhcccCCcEEEEEeccc
Confidence            799999999999999877754  156799999874

>d1nhpa1 c.3.1.5 (A:1-119,A:243-321) NADH peroxidase {Enterococcus faecalis [TaxId: 1351]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: NADH peroxidase
species: Enterococcus faecalis [TaxId: 1351]

Probab=97.53  E-value=0.00015  Score=68.04  Aligned_cols=46  Identities=17%  Similarity=0.320  Sum_probs=35.7

Q ss_pred             CCCeEEEcCeEEEEEEEccCCcEEEEEEEec-CCcEEEEEcCcEEEEccCCc
Q psy14408        647 RTNLYVLKRSKVTKVIINDQNVATGVEYVNS-KGETVRVTANKEVILTAGAI  697 (720)
Q Consensus       647 ~aGVkIi~gt~VtkIl~e~gGrAtGV~v~dt-~G~e~tIkAkK~VVVAAGa~  697 (720)
                      +.|+++++++.|++|..+ +++   |.+.+. +|++.++.++ .+|+|+|..
T Consensus        68 ~~gi~v~~~~~V~~i~~~-~~~---v~~~~~~~g~~~~~~~D-~li~a~G~~  114 (198)
T d1nhpa1          68 SRGVNVFSNTEITAIQPK-EHQ---VTVKDLVSGEERVENYD-KLIISPGAV  114 (198)
T ss_dssp             HTTCEEEETEEEEEEETT-TTE---EEEEETTTCCEEEEECS-EEEECCCEE
T ss_pred             HCCcEEEEeeceeeEeec-ccc---ceeeecccccccccccc-eeeEeecce
Confidence            579999999999999865 433   555543 5777889998 599999964

>d1vg0a1 c.3.1.3 (A:3-444,A:558-606) Rab escort protein 1 {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: GDI-like N domain
domain: Rab escort protein 1
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=97.43  E-value=0.00023  Score=77.29  Aligned_cols=40  Identities=20%  Similarity=0.307  Sum_probs=36.7

Q ss_pred             CCcccEEEECCcHHHHHHHHHHHhcCCCcEEEEccCCCCCC
Q psy14408        431 GDCFDIIIVGASAAGCVLANRLSEVSSLKVLLIEAGGDTPI  471 (720)
Q Consensus       431 d~eyDVVIIGSGiAGLvAA~~LAea~G~KVLVLEKG~~~~~  471 (720)
                      ..+|||||||-|..=+.+|..||+. |.|||-|||+.+.++
T Consensus         4 P~e~DVII~GTGL~ESILAaAlSr~-GkkVLHiD~N~yYGg   43 (491)
T d1vg0a1           4 PSDFDVIVIGTGLPESIIAAACSRS-GQRVLHVDSRSYYGG   43 (491)
T ss_dssp             CSBCSEEEECCSHHHHHHHHHHHHT-TCCEEEECSSSSSCG
T ss_pred             CCccCEEEECCChHHHHHHHHHHhc-CCEEEEecCCCcCCC
Confidence            4689999999999999999999999 999999999877754

>d1xdia1 c.3.1.5 (A:2-161,A:276-348) Dihydrolipoamide dehydrogenase {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=97.38  E-value=4.2e-05  Score=74.10  Aligned_cols=33  Identities=24%  Similarity=0.334  Sum_probs=28.9

Q ss_pred             ccEEEECCcHHHHHHHHHHHhc--CCCcEEEEccC
Q psy14408        434 FDIIIVGASAAGCVLANRLSEV--SSLKVLLIEAG  466 (720)
Q Consensus       434 yDVVIIGSGiAGLvAA~~LAea--~G~KVLVLEKG  466 (720)
                      .+|||||||++|++||.++|+.  .|++|+|+||+
T Consensus         2 ~~viVIG~GpaG~~aA~~aa~~~~~~~~V~liEk~   36 (233)
T d1xdia1           2 TRIVILGGGPAGYEAALVAATSHPETTQVTVIDCD   36 (233)
T ss_dssp             EEEEEECCSHHHHHHHHHHHHHCTTTEEEEEEESS
T ss_pred             cEEEEECCCHHHHHHHHHHHHcCCCCCEEEEEecC
Confidence            3899999999999999999885  14679999996

>d1xhca2 c.3.1.5 (A:104-225) NADH oxidase /nitrite reductase {Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: NADH oxidase /nitrite reductase
species: Pyrococcus furiosus [TaxId: 2261]

Probab=97.23  E-value=0.00011  Score=64.94  Aligned_cols=33  Identities=36%  Similarity=0.513  Sum_probs=31.3

Q ss_pred             cEEEECCcHHHHHHHHHHHhcCCCcEEEEccCCC
Q psy14408        435 DIIIVGASAAGCVLANRLSEVSSLKVLLIEAGGD  468 (720)
Q Consensus       435 DVVIIGSGiAGLvAA~~LAea~G~KVLVLEKG~~  468 (720)
                      +|+|||||..|+-+|..|++. |.+|+|+|+++.
T Consensus        34 ~vvIiGgG~iG~E~A~~l~~~-g~~Vtlv~~~~~   66 (122)
T d1xhca2          34 EAIIIGGGFIGLELAGNLAEA-GYHVKLIHRGAM   66 (122)
T ss_dssp             EEEEEECSHHHHHHHHHHHHT-TCEEEEECSSSC
T ss_pred             cEEEECCcHHHHHHHHHhhcc-cceEEEEecccc
Confidence            799999999999999999999 999999999854

>d1fl2a2 c.3.1.5 (A:326-451) Alkyl hydroperoxide reductase subunit F (AhpF), C-terminal domains {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Alkyl hydroperoxide reductase subunit F (AhpF), C-terminal domains
species: Escherichia coli [TaxId: 562]

Probab=97.19  E-value=0.0039  Score=55.28  Aligned_cols=47  Identities=17%  Similarity=0.340  Sum_probs=40.9

Q ss_pred             CCCeEEEcCeEEEEEEEccCCcEEEEEEEec-CCcEEEEEcCcEEEEccC
Q psy14408        647 RTNLYVLKRSKVTKVIINDQNVATGVEYVNS-KGETVRVTANKEVILTAG  695 (720)
Q Consensus       647 ~aGVkIi~gt~VtkIl~e~gGrAtGV~v~dt-~G~e~tIkAkK~VVVAAG  695 (720)
                      ..++++++++.|++|.-+ +++++||++++. +|++.++.++ .|+++-|
T Consensus        78 ~~~I~v~~~~~v~~i~G~-~~~v~~v~l~~~~tge~~~l~vd-gvFv~IG  125 (126)
T d1fl2a2          78 LKNVDIILNAQTTEVKGD-GSKVVGLEYRDRVSGDIHNIELA-GIFVQIG  125 (126)
T ss_dssp             CTTEEEESSEEEEEEEES-SSSEEEEEEEETTTCCEEEEECS-EEEECSC
T ss_pred             ccceeEEcCcceEEEEcc-ccceeeEEEEECCCCCEEEEECC-EEEEEeC
Confidence            456999999999999987 678999999986 6888899998 5999987

>d1d7ya2 c.3.1.5 (A:116-236) NADH-dependent ferredoxin reductase, BphA4 {Pseudomonas sp., KKS102 [TaxId: 306]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: NADH-dependent ferredoxin reductase, BphA4
species: Pseudomonas sp., KKS102 [TaxId: 306]

Probab=97.18  E-value=0.00015  Score=64.31  Aligned_cols=34  Identities=26%  Similarity=0.378  Sum_probs=31.8

Q ss_pred             cEEEECCcHHHHHHHHHHHhcCCCcEEEEccCCCC
Q psy14408        435 DIIIVGASAAGCVLANRLSEVSSLKVLLIEAGGDT  469 (720)
Q Consensus       435 DVVIIGSGiAGLvAA~~LAea~G~KVLVLEKG~~~  469 (720)
                      .|+|||||+.|+-+|..|++. |++|+|||+++..
T Consensus        32 ~vvIIGgG~iG~E~A~~l~~~-g~~Vtli~~~~~~   65 (121)
T d1d7ya2          32 RLLIVGGGVIGLELAATARTA-GVHVSLVETQPRL   65 (121)
T ss_dssp             EEEEECCSHHHHHHHHHHHHT-TCEEEEEESSSST
T ss_pred             eEEEECcchhHHHHHHHhhcc-cceEEEEeecccc
Confidence            799999999999999999999 9999999998643

>d1nhpa2 c.3.1.5 (A:120-242) NADH peroxidase {Enterococcus faecalis [TaxId: 1351]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: NADH peroxidase
species: Enterococcus faecalis [TaxId: 1351]

Probab=97.16  E-value=0.00015  Score=64.19  Aligned_cols=33  Identities=18%  Similarity=0.364  Sum_probs=31.3

Q ss_pred             cEEEECCcHHHHHHHHHHHhcCCCcEEEEccCCC
Q psy14408        435 DIIIVGASAAGCVLANRLSEVSSLKVLLIEAGGD  468 (720)
Q Consensus       435 DVVIIGSGiAGLvAA~~LAea~G~KVLVLEKG~~  468 (720)
                      .|+|||||..|+-+|..|++. |++|+|+|+.+.
T Consensus        32 ~vvViGgG~iG~E~A~~l~~~-g~~Vtlie~~~~   64 (123)
T d1nhpa2          32 NVVVIGSGYIGIEAAEAFAKA-GKKVTVIDILDR   64 (123)
T ss_dssp             EEEEECCSHHHHHHHHHHHHT-TCEEEEEESSSS
T ss_pred             EEEEECChHHHHHHHHHhhcc-ceEEEEEEecCc
Confidence            799999999999999999999 999999999854

>d1onfa2 c.3.1.5 (A:154-270) Glutathione reductase {Plasmodium falciparum [TaxId: 5833]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Glutathione reductase
species: Plasmodium falciparum [TaxId: 5833]

Probab=97.14  E-value=0.00017  Score=63.49  Aligned_cols=34  Identities=21%  Similarity=0.327  Sum_probs=31.6

Q ss_pred             cEEEECCcHHHHHHHHHHHhcCCCcEEEEccCCCC
Q psy14408        435 DIIIVGASAAGCVLANRLSEVSSLKVLLIEAGGDT  469 (720)
Q Consensus       435 DVVIIGSGiAGLvAA~~LAea~G~KVLVLEKG~~~  469 (720)
                      .|+|||||..|+-+|..|++. |.+|+||||++..
T Consensus        24 ~v~IiGgG~iG~E~A~~l~~~-g~~Vtlv~~~~~i   57 (117)
T d1onfa2          24 KIGIVGSGYIAVELINVIKRL-GIDSYIFARGNRI   57 (117)
T ss_dssp             EEEEECCSHHHHHHHHHHHTT-TCEEEEECSSSSS
T ss_pred             EEEEECCchHHHHHHHHHHhc-cccceeeehhccc
Confidence            699999999999999999999 9999999998543

>d1fcda1 c.3.1.5 (A:1-114,A:256-327) Flavocytochrome c sulfide dehydrogenase, FCSD, flavin-binding subunit {Purple phototrophic bacterium (Chromatium vinosum) [TaxId: 1049]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Flavocytochrome c sulfide dehydrogenase, FCSD, flavin-binding subunit
species: Purple phototrophic bacterium (Chromatium vinosum) [TaxId: 1049]

Probab=97.09  E-value=0.00018  Score=64.50  Aligned_cols=34  Identities=26%  Similarity=0.490  Sum_probs=30.2

Q ss_pred             cEEEECCcHHHHHHHHHHHhcCC--CcEEEEccCCCC
Q psy14408        435 DIIIVGASAAGCVLANRLSEVSS--LKVLLIEAGGDT  469 (720)
Q Consensus       435 DVVIIGSGiAGLvAA~~LAea~G--~KVLVLEKG~~~  469 (720)
                      .|||||||.+|+.+|.+|.+. |  .+|+|||+....
T Consensus         4 rivIvGgG~~G~e~A~~l~~~-~~~~~Vtlie~~~~~   39 (186)
T d1fcda1           4 KVVVVGGGTGGATAAKYIKLA-DPSIEVTLIEPNTDY   39 (186)
T ss_dssp             EEEEECCSHHHHHHHHHHHHH-CTTSEEEEECSCSCE
T ss_pred             cEEEECccHHHHHHHHHHHHc-CCCCcEEEEECCCcc
Confidence            699999999999999999997 6  589999998643

>d1q1ra1 c.3.1.5 (A:2-114,A:248-319) Putidaredoxin reductase {Pseudomonas putida [TaxId: 303]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Putidaredoxin reductase
species: Pseudomonas putida [TaxId: 303]

Probab=96.88  E-value=0.00028  Score=64.39  Aligned_cols=34  Identities=26%  Similarity=0.329  Sum_probs=31.1

Q ss_pred             cEEEECCcHHHHHHHHHHHhcCCCcEEEEccCCCC
Q psy14408        435 DIIIVGASAAGCVLANRLSEVSSLKVLLIEAGGDT  469 (720)
Q Consensus       435 DVVIIGSGiAGLvAA~~LAea~G~KVLVLEKG~~~  469 (720)
                      ||||||||.+|+-+|..|++. |.+|+|+++....
T Consensus         5 ~VvIIGgG~~G~e~A~~l~~~-g~~v~v~~~~~~~   38 (185)
T d1q1ra1           5 NVVIVGTGLAGVEVAFGLRAS-GWEGNIRLVGDAT   38 (185)
T ss_dssp             EEEEECCSHHHHHHHHHHHHT-TCCSEEEEECSCC
T ss_pred             CEEEECCcHHHHHHHHHHHHc-CCceEEEEecCcc
Confidence            899999999999999999999 9999999887544

>d1e5qa1 c.2.1.3 (A:2-124,A:392-450) Saccharopine reductase {Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Saccharopine reductase
species: Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]

Probab=96.82  E-value=0.00032  Score=63.47  Aligned_cols=32  Identities=13%  Similarity=0.177  Sum_probs=30.2

Q ss_pred             cEEEECCcHHHHHHHHHHHhcCCCcEEEEccCC
Q psy14408        435 DIIIVGASAAGCVLANRLSEVSSLKVLLIEAGG  467 (720)
Q Consensus       435 DVVIIGSGiAGLvAA~~LAea~G~KVLVLEKG~  467 (720)
                      -|+|||+|..|..+|.+|+++ |++|+|+||..
T Consensus         4 ~IliiGaG~~G~~~a~~L~~~-g~~V~v~dr~~   35 (182)
T d1e5qa1           4 SVLMLGSGFVTRPTLDVLTDS-GIKVTVACRTL   35 (182)
T ss_dssp             EEEEECCSTTHHHHHHHHHTT-TCEEEEEESCH
T ss_pred             EEEEECCCHHHHHHHHHHHhC-CCEEEEEECCh
Confidence            589999999999999999999 99999999863

>d1ps9a2 c.3.1.1 (A:466-627) 2,4-dienoyl-CoA reductase, C-terminal domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: C-terminal domain of adrenodoxin reductase-like
domain: 2,4-dienoyl-CoA reductase, C-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=96.73  E-value=0.00068  Score=61.49  Aligned_cols=42  Identities=21%  Similarity=0.364  Sum_probs=33.1

Q ss_pred             cCCCeEEEcCeEEEEEEEccCCcEEEEEEEecCCcEEEEEcCcEEEEccC
Q psy14408        646 KRTNLYVLKRSKVTKVIINDQNVATGVEYVNSKGETVRVTANKEVILTAG  695 (720)
Q Consensus       646 e~aGVkIi~gt~VtkIl~e~gGrAtGV~v~dt~G~e~tIkAkK~VVVAAG  695 (720)
                      ++.|+++++++.|.+|. + +    |+.+.. +|.+..|.|| .||+|+|
T Consensus       119 ~~~gv~~~~~~~v~~i~-~-~----gv~~~~-~g~e~~i~aD-~Vv~A~G  160 (162)
T d1ps9a2         119 LSRGVKMIPGVSYQKID-D-D----GLHVVI-NGETQVLAVD-NVVICAG  160 (162)
T ss_dssp             HHTTCEEECSCEEEEEE-T-T----EEEEEE-TTEEEEECCS-EEEECCC
T ss_pred             hhCCeEEEeeeEEEEEc-C-C----CCEEec-CCeEEEEECC-EEEECCC
Confidence            37899999999999985 2 2    454543 5777889998 5999998

>d1d7ya1 c.3.1.5 (A:5-115,A:237-308) NADH-dependent ferredoxin reductase, BphA4 {Pseudomonas sp., KKS102 [TaxId: 306]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: NADH-dependent ferredoxin reductase, BphA4
species: Pseudomonas sp., KKS102 [TaxId: 306]

Probab=96.47  E-value=0.00065  Score=62.55  Aligned_cols=34  Identities=18%  Similarity=0.377  Sum_probs=30.1

Q ss_pred             ccEEEECCcHHHHHHHHHHHhcCCCcEEEEccCCC
Q psy14408        434 FDIIIVGASAAGCVLANRLSEVSSLKVLLIEAGGD  468 (720)
Q Consensus       434 yDVVIIGSGiAGLvAA~~LAea~G~KVLVLEKG~~  468 (720)
                      ..|||||||.+|+-+|..|++. |.+|.|+++++.
T Consensus         4 a~VvIIGgG~~G~e~A~~l~~~-g~~v~i~~~~~~   37 (183)
T d1d7ya1           4 APVVVLGAGLASVSFVAELRQA-GYQGLITVVGDE   37 (183)
T ss_dssp             SSEEEECCSHHHHHHHHHHHHH-TCCSCEEEEESS
T ss_pred             CCEEEECccHHHHHHHHHHHhc-CCceEEEEEecc
Confidence            4699999999999999999999 999888887643

>d1trba2 c.3.1.5 (A:119-244) Thioredoxin reductase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Thioredoxin reductase
species: Escherichia coli [TaxId: 562]

Probab=96.37  E-value=0.031  Score=49.09  Aligned_cols=47  Identities=15%  Similarity=0.240  Sum_probs=38.3

Q ss_pred             CCCeEEEcCeEEEEEEEccCCcEEEEEEEec-CCc-EEEEEcCcEEEEccC
Q psy14408        647 RTNLYVLKRSKVTKVIINDQNVATGVEYVNS-KGE-TVRVTANKEVILTAG  695 (720)
Q Consensus       647 ~aGVkIi~gt~VtkIl~e~gGrAtGV~v~dt-~G~-e~tIkAkK~VVVAAG  695 (720)
                      ..++.++.++.|++|.-+ +++++||++++. .++ ..++.++ .|+++.|
T Consensus        78 ~~~i~~~~~~~v~~i~G~-~~~v~~v~l~~~~~~e~~~~l~~d-gvFv~iG  126 (126)
T d1trba2          78 NGNIILHTNRTLEEVTGD-QMGVTGVRLRDTQNSDNIESLDVA-GLFVAIG  126 (126)
T ss_dssp             TSSEEEECSCEEEEEEEC-SSSEEEEEEECCTTCCCCEEEECS-EEEECSC
T ss_pred             ccceeEecceEEEEEECC-CCceEEEEEEECCCCceEEEEECC-EEEEEeC
Confidence            567999999999999987 677999999985 333 3578998 5999876

>d1bg6a2 c.2.1.6 (A:4-187) N-(1-D-carboxylethyl)-L-norvaline dehydrogenase {Arthrobacter, strain 1c [TaxId: 1663]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: N-(1-D-carboxylethyl)-L-norvaline dehydrogenase
species: Arthrobacter, strain 1c [TaxId: 1663]

Probab=96.36  E-value=0.0013  Score=60.22  Aligned_cols=31  Identities=19%  Similarity=0.249  Sum_probs=29.6

Q ss_pred             cEEEECCcHHHHHHHHHHHhcCCCcEEEEccC
Q psy14408        435 DIIIVGASAAGCVLANRLSEVSSLKVLLIEAG  466 (720)
Q Consensus       435 DVVIIGSGiAGLvAA~~LAea~G~KVLVLEKG  466 (720)
                      -|.|||+|..|+++|..|+++ |++|.|++|.
T Consensus         3 ~iaIiGaG~~G~~~A~~l~~~-G~~V~~~~r~   33 (184)
T d1bg6a2           3 TYAVLGLGNGGHAFAAYLALK-GQSVLAWDID   33 (184)
T ss_dssp             EEEEECCSHHHHHHHHHHHHT-TCEEEEECSC
T ss_pred             EEEEECccHHHHHHHHHHHHC-CCEEEEEECC
Confidence            489999999999999999999 9999999986

>d1m6ia1 c.3.1.5 (A:128-263,A:401-477) Apoptosis-inducing factor (AIF) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Apoptosis-inducing factor (AIF)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.36  E-value=0.0013  Score=62.79  Aligned_cols=55  Identities=20%  Similarity=0.347  Sum_probs=38.7

Q ss_pred             cCCCeEEEcCeEEEEEEEccCCcEEEEEEEecCCcEEEEEcCcEEEEccCCcch-HHHHHHcCCC
Q psy14408        646 KRTNLYVLKRSKVTKVIINDQNVATGVEYVNSKGETVRVTANKEVILTAGAIAN-AQLLLLSGIG  709 (720)
Q Consensus       646 e~aGVkIi~gt~VtkIl~e~gGrAtGV~v~dt~G~e~tIkAkK~VVVAAGa~~S-p~LLl~SGIg  709 (720)
                      ++.|++++++++|++|..+ ++   .|++.  +|+  +|.++ .||+|+|+... ..+....|+.
T Consensus        94 ~~~gI~~~~g~~V~~id~~-~~---~V~l~--dG~--~i~~d-~lViAtG~~~~~~~l~~~~gl~  149 (213)
T d1m6ia1          94 ENGGVAVLTGKKVVQLDVR-DN---MVKLN--DGS--QITYE-KCLIATGGTEPNVELAKTGGLE  149 (213)
T ss_dssp             TTCEEEEEETCCEEEEEGG-GT---EEEET--TSC--EEEEE-EEEECCCEEEECCTTHHHHTCC
T ss_pred             HHCCeEEEeCCEEEEeecc-Cc---eeeec--cce--eeccc-eEEEeeeeecchhhhhhccchh
Confidence            4789999999999999765 33   34443  475  67887 49999996533 2455666664

>d1xhca1 c.3.1.5 (A:1-103,A:226-289) NADH oxidase /nitrite reductase {Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: NADH oxidase /nitrite reductase
species: Pyrococcus furiosus [TaxId: 2261]

Probab=96.33  E-value=0.0014  Score=58.96  Aligned_cols=32  Identities=31%  Similarity=0.519  Sum_probs=28.0

Q ss_pred             cEEEECCcHHHHHHHHHHHhcCCCcEEEEccCCC
Q psy14408        435 DIIIVGASAAGCVLANRLSEVSSLKVLLIEAGGD  468 (720)
Q Consensus       435 DVVIIGSGiAGLvAA~~LAea~G~KVLVLEKG~~  468 (720)
                      -|||||||.+|+-+|..|++  +.+|+|+|+...
T Consensus         2 rVvIIGgG~~G~e~A~~l~~--~~~Vtvv~~~~~   33 (167)
T d1xhca1           2 KVVIVGNGPGGFELAKQLSQ--TYEVTVIDKEPV   33 (167)
T ss_dssp             EEEEECCSHHHHHHHHHHTT--TSEEEEECSSSS
T ss_pred             eEEEECCcHHHHHHHHHHHc--CCCEEEEecccc
Confidence            48999999999999999964  679999998743

>d1vdca2 c.3.1.5 (A:118-243) Thioredoxin reductase {Mouse-ear cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Thioredoxin reductase
species: Mouse-ear cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=96.32  E-value=0.037  Score=49.14  Aligned_cols=46  Identities=15%  Similarity=0.279  Sum_probs=37.6

Q ss_pred             CCCeEEEcCeEEEEEEEcc-CCcEEEEEEEec-CCcEEEEEcCcEEEEc
Q psy14408        647 RTNLYVLKRSKVTKVIIND-QNVATGVEYVNS-KGETVRVTANKEVILT  693 (720)
Q Consensus       647 ~aGVkIi~gt~VtkIl~e~-gGrAtGV~v~dt-~G~e~tIkAkK~VVVA  693 (720)
                      ..+++++.++.|.+|.-++ .+.+.++++++. +|+..++.++ .|+|+
T Consensus        82 ~~nI~v~~~~~v~~i~Gd~~~~~v~~v~l~~~~tge~~~l~~d-GvFVa  129 (130)
T d1vdca2          82 NPKIDVIWNSSVVEAYGDGERDVLGGLKVKNVVTGDVSDLKVS-GLFFA  129 (130)
T ss_dssp             CTTEEEECSEEEEEEEESSSSSSEEEEEEEETTTCCEEEEECS-EEEEC
T ss_pred             CCceEEEeccEEEEEEccCCcccEEEEEEEECCCCCEEEEECC-EEEEE
Confidence            4579999999999999872 246899999885 6778899998 58876

>d1ks9a2 c.2.1.6 (A:1-167) Ketopantoate reductase PanE {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Ketopantoate reductase PanE
species: Escherichia coli [TaxId: 562]

Probab=96.24  E-value=0.0018  Score=58.14  Aligned_cols=32  Identities=19%  Similarity=0.130  Sum_probs=30.2

Q ss_pred             cEEEECCcHHHHHHHHHHHhcCCCcEEEEccCC
Q psy14408        435 DIIIVGASAAGCVLANRLSEVSSLKVLLIEAGG  467 (720)
Q Consensus       435 DVVIIGSGiAGLvAA~~LAea~G~KVLVLEKG~  467 (720)
                      -|+|||+|..|...|..|+++ |++|++++|..
T Consensus         2 kI~IiGaG~iG~~~a~~L~~~-G~~V~~~~r~~   33 (167)
T d1ks9a2           2 KITVLGCGALGQLWLTALCKQ-GHEVQGWLRVP   33 (167)
T ss_dssp             EEEEECCSHHHHHHHHHHHHT-TCEEEEECSSC
T ss_pred             EEEEECcCHHHHHHHHHHHHC-CCceEEEEcCH
Confidence            489999999999999999999 99999999974

>d2jfga1 c.5.1.1 (A:1-93) UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase MurD {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: MurCD N-terminal domain
superfamily: MurCD N-terminal domain
family: MurCD N-terminal domain
domain: UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase MurD
species: Escherichia coli [TaxId: 562]

Probab=96.18  E-value=0.0017  Score=54.33  Aligned_cols=33  Identities=9%  Similarity=0.221  Sum_probs=30.6

Q ss_pred             cEEEECCcHHHHHHHHHHHhcCCCcEEEEccCCC
Q psy14408        435 DIIIVGASAAGCVLANRLSEVSSLKVLLIEAGGD  468 (720)
Q Consensus       435 DVVIIGSGiAGLvAA~~LAea~G~KVLVLEKG~~  468 (720)
                      .|+|||.|.+|+++|..|++. |.+|++.|....
T Consensus         7 ~v~ViGlG~sG~s~a~~L~~~-g~~v~~~D~~~~   39 (93)
T d2jfga1           7 NVVIIGLGLTGLSCVDFFLAR-GVTPRVMDTRMT   39 (93)
T ss_dssp             CEEEECCSHHHHHHHHHHHHT-TCCCEEEESSSS
T ss_pred             EEEEEeECHHHHHHHHHHHHC-CCEEEEeeCCcC
Confidence            699999999999999999999 999999998643

>d1djqa2 c.3.1.1 (A:490-645) Trimethylamine dehydrogenase, C-terminal domain {Methylophilus methylotrophus, w3a1 [TaxId: 17]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: C-terminal domain of adrenodoxin reductase-like
domain: Trimethylamine dehydrogenase, C-terminal domain
species: Methylophilus methylotrophus, w3a1 [TaxId: 17]

Probab=95.75  E-value=0.0037  Score=56.34  Aligned_cols=33  Identities=15%  Similarity=0.191  Sum_probs=29.8

Q ss_pred             cEEEE--CCcHHHHHHHHHHHhcCCCcEEEEccCCC
Q psy14408        435 DIIIV--GASAAGCVLANRLSEVSSLKVLLIEAGGD  468 (720)
Q Consensus       435 DVVII--GSGiAGLvAA~~LAea~G~KVLVLEKG~~  468 (720)
                      .||||  |||..|+.+|..|++. |++|+|||+...
T Consensus        41 ~vvi~d~ggg~ig~e~A~~la~~-G~~Vtlv~~~~~   75 (156)
T d1djqa2          41 RVVILNADTYFMAPSLAEKLATA-GHEVTIVSGVHL   75 (156)
T ss_dssp             EEEEEECCCSSHHHHHHHHHHHT-TCEEEEEESSCT
T ss_pred             ceEEEecCCChHHHHHHHHHHHc-CCeEEEEecCCc
Confidence            66766  9999999999999999 999999999753

>d1f0ya2 c.2.1.6 (A:12-203) Short chain L-3-hydroxyacyl CoA dehydrogenase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Short chain L-3-hydroxyacyl CoA dehydrogenase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.50  E-value=0.005  Score=58.31  Aligned_cols=31  Identities=16%  Similarity=0.373  Sum_probs=29.8

Q ss_pred             cEEEECCcHHHHHHHHHHHhcCCCcEEEEccC
Q psy14408        435 DIIIVGASAAGCVLANRLSEVSSLKVLLIEAG  466 (720)
Q Consensus       435 DVVIIGSGiAGLvAA~~LAea~G~KVLVLEKG  466 (720)
                      -|.|||+|..|...|..+|.+ |++|+|+|+.
T Consensus         6 kvaViGaG~mG~~iA~~~a~~-G~~V~l~D~~   36 (192)
T d1f0ya2           6 HVTVIGGGLMGAGIAQVAAAT-GHTVVLVDQT   36 (192)
T ss_dssp             EEEEECCSHHHHHHHHHHHHT-TCEEEEECSC
T ss_pred             EEEEECcCHHHHHHHHHHHhC-CCcEEEEECC
Confidence            699999999999999999999 9999999986

>d1lssa_ c.2.1.9 (A:) Ktn Mja218 {Archaeon Methanococcus jannaschii [TaxId: 2190]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Potassium channel NAD-binding domain
domain: Ktn Mja218
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

Probab=95.43  E-value=0.0057  Score=53.80  Aligned_cols=31  Identities=39%  Similarity=0.539  Sum_probs=29.5

Q ss_pred             cEEEECCcHHHHHHHHHHHhcCCCcEEEEccC
Q psy14408        435 DIIIVGASAAGCVLANRLSEVSSLKVLLIEAG  466 (720)
Q Consensus       435 DVVIIGSGiAGLvAA~~LAea~G~KVLVLEKG  466 (720)
                      -|||+|+|-.|..+|..|.++ |+.|+|||+.
T Consensus         2 ~IvI~G~G~~G~~la~~L~~~-g~~v~vid~d   32 (132)
T d1lssa_           2 YIIIAGIGRVGYTLAKSLSEK-GHDIVLIDID   32 (132)
T ss_dssp             EEEEECCSHHHHHHHHHHHHT-TCEEEEEESC
T ss_pred             EEEEECCCHHHHHHHHHHHHC-CCCcceecCC
Confidence            389999999999999999999 9999999987

>d1wdka3 c.2.1.6 (A:311-496) Fatty oxidation complex alpha subunit, middle domain {Pseudomonas fragi [TaxId: 296]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Fatty oxidation complex alpha subunit, middle domain
species: Pseudomonas fragi [TaxId: 296]

Probab=95.34  E-value=0.0058  Score=57.43  Aligned_cols=31  Identities=16%  Similarity=0.268  Sum_probs=29.6

Q ss_pred             cEEEECCcHHHHHHHHHHHhcCCCcEEEEccC
Q psy14408        435 DIIIVGASAAGCVLANRLSEVSSLKVLLIEAG  466 (720)
Q Consensus       435 DVVIIGSGiAGLvAA~~LAea~G~KVLVLEKG  466 (720)
                      -|.|||+|..|...|..+|.+ |++|+|+|+.
T Consensus         6 ~vaViGaG~mG~~iA~~~a~~-G~~V~l~D~~   36 (186)
T d1wdka3           6 QAAVLGAGIMGGGIAYQSASK-GTPILMKDIN   36 (186)
T ss_dssp             SEEEECCHHHHHHHHHHHHHT-TCCEEEECSS
T ss_pred             EEEEECcCHHHHHHHHHHHhC-CCeEEEEECC
Confidence            499999999999999999999 9999999986

>d1mv8a2 c.2.1.6 (A:1-202) GDP-mannose 6-dehydrogenase {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: GDP-mannose 6-dehydrogenase
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=95.32  E-value=0.0051  Score=58.20  Aligned_cols=30  Identities=30%  Similarity=0.352  Sum_probs=28.8

Q ss_pred             EEEECCcHHHHHHHHHHHhcCCCcEEEEccC
Q psy14408        436 IIIVGASAAGCVLANRLSEVSSLKVLLIEAG  466 (720)
Q Consensus       436 VVIIGSGiAGLvAA~~LAea~G~KVLVLEKG  466 (720)
                      |.|||.|..|+++|..||++ |++|+.+|..
T Consensus         3 I~ViGlG~vGl~~a~~la~~-g~~V~g~D~n   32 (202)
T d1mv8a2           3 ISIFGLGYVGAVCAGCLSAR-GHEVIGVDVS   32 (202)
T ss_dssp             EEEECCSTTHHHHHHHHHHT-TCEEEEECSC
T ss_pred             EEEECCCHhHHHHHHHHHhC-CCcEEEEeCC
Confidence            78999999999999999999 9999999975

>d2hmva1 c.2.1.9 (A:7-140) Ktn bsu222 {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Potassium channel NAD-binding domain
domain: Ktn bsu222
species: Bacillus subtilis [TaxId: 1423]

Probab=94.97  E-value=0.0085  Score=52.35  Aligned_cols=31  Identities=16%  Similarity=0.378  Sum_probs=29.6

Q ss_pred             cEEEECCcHHHHHHHHHHHhcCCCcEEEEccC
Q psy14408        435 DIIIVGASAAGCVLANRLSEVSSLKVLLIEAG  466 (720)
Q Consensus       435 DVVIIGSGiAGLvAA~~LAea~G~KVLVLEKG  466 (720)
                      .+||||.|-.|..+|..|.+. |++|+|+|+.
T Consensus         2 ~~iIiG~G~~G~~la~~L~~~-g~~vvvid~d   32 (134)
T d2hmva1           2 QFAVIGLGRFGGSIVKELHRM-GHEVLAVDIN   32 (134)
T ss_dssp             CEEEECCSHHHHHHHHHHHHT-TCCCEEEESC
T ss_pred             EEEEECCCHHHHHHHHHHHHC-CCeEEEecCc
Confidence            589999999999999999999 9999999986

>d1jaya_ c.2.1.6 (A:) Coenzyme F420H2:NADP+ oxidoreductase (FNO) {Archaeon Archaeoglobus fulgidus [TaxId: 2234]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Coenzyme F420H2:NADP+ oxidoreductase (FNO)
species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]

Probab=94.42  E-value=0.015  Score=51.74  Aligned_cols=30  Identities=20%  Similarity=0.323  Sum_probs=28.2

Q ss_pred             EEEE-CCcHHHHHHHHHHHhcCCCcEEEEccC
Q psy14408        436 IIIV-GASAAGCVLANRLSEVSSLKVLLIEAG  466 (720)
Q Consensus       436 VVII-GSGiAGLvAA~~LAea~G~KVLVLEKG  466 (720)
                      |+|| |+|-.|.+.|..|+++ |++|+|..|.
T Consensus         3 i~vigGaG~iG~alA~~la~~-G~~V~l~~R~   33 (212)
T d1jaya_           3 VALLGGTGNLGKGLALRLATL-GHEIVVGSRR   33 (212)
T ss_dssp             EEEETTTSHHHHHHHHHHHTT-TCEEEEEESS
T ss_pred             EEEEeCCcHHHHHHHHHHHHC-CCEEEEEECC
Confidence            7888 7799999999999999 9999999986

>d1n1ea2 c.2.1.6 (A:9-197) Glycerol-3- phosphate dehydrogenase {Trypanosome (Leishmania mexicana) [TaxId: 5665]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Glycerol-3- phosphate dehydrogenase
species: Trypanosome (Leishmania mexicana) [TaxId: 5665]

Probab=94.26  E-value=0.012  Score=55.51  Aligned_cols=31  Identities=26%  Similarity=0.318  Sum_probs=29.6

Q ss_pred             cEEEECCcHHHHHHHHHHHhcCCCcEEEEccC
Q psy14408        435 DIIIVGASAAGCVLANRLSEVSSLKVLLIEAG  466 (720)
Q Consensus       435 DVVIIGSGiAGLvAA~~LAea~G~KVLVLEKG  466 (720)
                      .|+|||+|.-|.+.|..|++. |++|+|..|.
T Consensus         9 KI~ViGaG~wGtAlA~~La~~-g~~V~l~~r~   39 (189)
T d1n1ea2           9 KAVVFGSGAFGTALAMVLSKK-CREVCVWHMN   39 (189)
T ss_dssp             EEEEECCSHHHHHHHHHHHTT-EEEEEEECSC
T ss_pred             eEEEECCCHHHHHHHHHHHHc-CCeEEEEEec
Confidence            699999999999999999999 9999999975

>d1pjca1 c.2.1.4 (A:136-303) L-alanine dehydrogenase {Phormidium lapideum [TaxId: 32060]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: L-alanine dehydrogenase
species: Phormidium lapideum [TaxId: 32060]

Probab=94.19  E-value=0.018  Score=53.83  Aligned_cols=33  Identities=15%  Similarity=0.242  Sum_probs=30.9

Q ss_pred             cccEEEECCcHHHHHHHHHHHhcCCCcEEEEccC
Q psy14408        433 CFDIIIVGASAAGCVLANRLSEVSSLKVLLIEAG  466 (720)
Q Consensus       433 eyDVVIIGSGiAGLvAA~~LAea~G~KVLVLEKG  466 (720)
                      -..|+|||+|.+|+.||..+.+- |.+|.++|..
T Consensus        32 pa~V~ViGaGvaG~~A~~~A~~l-GA~V~~~D~~   64 (168)
T d1pjca1          32 PGKVVILGGGVVGTEAAKMAVGL-GAQVQIFDIN   64 (168)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHT-TCEEEEEESC
T ss_pred             CcEEEEECCChHHHHHHHHHhhC-CCEEEEEeCc
Confidence            45999999999999999999999 9999999986

>d1gtea3 c.3.1.1 (A:288-440) Dihydropyrimidine dehydrogenase, domain 3 {Pig (Sus scrofa) [TaxId: 9823]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: C-terminal domain of adrenodoxin reductase-like
domain: Dihydropyrimidine dehydrogenase, domain 3
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=94.18  E-value=0.02  Score=52.20  Aligned_cols=31  Identities=19%  Similarity=0.274  Sum_probs=28.2

Q ss_pred             cEEEECCcHHHHHHHHHHHhcCCCc-EEEEccC
Q psy14408        435 DIIIVGASAAGCVLANRLSEVSSLK-VLLIEAG  466 (720)
Q Consensus       435 DVVIIGSGiAGLvAA~~LAea~G~K-VLVLEKG  466 (720)
                      .|||||||-+|+=||..|.+. |.+ |+|++|.
T Consensus        47 kVvVIGGGdtA~D~A~~a~r~-GA~~V~vi~rr   78 (153)
T d1gtea3          47 AVIVLGAGDTAFDCATSALRC-GARRVFLVFRK   78 (153)
T ss_dssp             EEEEECSSHHHHHHHHHHHHT-TCSEEEEECSS
T ss_pred             EEEEECCChhHHHHHHHHHHc-CCcceeEEEeC
Confidence            699999999999999999999 865 8899876

>d1l7da1 c.2.1.4 (A:144-326) Nicotinamide nucleotide transhydrogenase dI component {Rhodospirillum rubrum [TaxId: 1085]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: Nicotinamide nucleotide transhydrogenase dI component
species: Rhodospirillum rubrum [TaxId: 1085]

Probab=93.99  E-value=0.021  Score=54.03  Aligned_cols=33  Identities=12%  Similarity=0.229  Sum_probs=30.7

Q ss_pred             ccEEEECCcHHHHHHHHHHHhcCCCcEEEEccCC
Q psy14408        434 FDIIIVGASAAGCVLANRLSEVSSLKVLLIEAGG  467 (720)
Q Consensus       434 yDVVIIGSGiAGLvAA~~LAea~G~KVLVLEKG~  467 (720)
                      ..|+|||+|.+|+.||..+.+- |..|.++|...
T Consensus        30 a~VvViGaGvaG~~Aa~~A~~l-GA~V~v~D~~~   62 (183)
T d1l7da1          30 ARVLVFGVGVAGLQAIATAKRL-GAVVMATDVRA   62 (183)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHT-TCEEEEECSCS
T ss_pred             cEEEEEcCcHHHHHHHHHHHHc-CCEEEEEeccH
Confidence            5999999999999999999999 99999999873

>d1txga2 c.2.1.6 (A:1-180) Glycerol-3- phosphate dehydrogenase {Archaeoglobus fulgidus [TaxId: 2234]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Glycerol-3- phosphate dehydrogenase
species: Archaeoglobus fulgidus [TaxId: 2234]

Probab=93.85  E-value=0.021  Score=52.88  Aligned_cols=31  Identities=26%  Similarity=0.287  Sum_probs=28.8

Q ss_pred             cEEEECCcHHHHHHHHHHHhcCCCcEEEEccC
Q psy14408        435 DIIIVGASAAGCVLANRLSEVSSLKVLLIEAG  466 (720)
Q Consensus       435 DVVIIGSGiAGLvAA~~LAea~G~KVLVLEKG  466 (720)
                      .|.|||+|..|.+.|..|+++ |++|+|..|.
T Consensus         2 kI~ViGaG~~GtalA~~la~~-g~~V~l~~r~   32 (180)
T d1txga2           2 IVSILGAGAMGSALSVPLVDN-GNEVRIWGTE   32 (180)
T ss_dssp             EEEEESCCHHHHHHHHHHHHH-CCEEEEECCG
T ss_pred             EEEEECCCHHHHHHHHHHHHC-CCEEEEEEec
Confidence            589999999999999999999 9999999764

>d2f1ka2 c.2.1.6 (A:1-165) Prephenate dehydrogenase TyrA {Synechocystis sp. pcc 6803 [TaxId: 1148]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Prephenate dehydrogenase TyrA
species: Synechocystis sp. pcc 6803 [TaxId: 1148]

Probab=93.71  E-value=0.026  Score=50.93  Aligned_cols=30  Identities=23%  Similarity=0.256  Sum_probs=28.8

Q ss_pred             EEEECCcHHHHHHHHHHHhcCCCcEEEEccC
Q psy14408        436 IIIVGASAAGCVLANRLSEVSSLKVLLIEAG  466 (720)
Q Consensus       436 VVIIGSGiAGLvAA~~LAea~G~KVLVLEKG  466 (720)
                      |.|||.|..|.+.|..|+++ |++|+++||.
T Consensus         3 I~iIG~G~mG~~lA~~l~~~-g~~V~~~d~~   32 (165)
T d2f1ka2           3 IGVVGLGLIGASLAGDLRRR-GHYLIGVSRQ   32 (165)
T ss_dssp             EEEECCSHHHHHHHHHHHHT-TCEEEEECSC
T ss_pred             EEEEeecHHHHHHHHHHHHC-CCEEEEEECC
Confidence            78999999999999999999 9999999986

>d1kyqa1 c.2.1.11 (A:1-150) Bifunctional dehydrogenase/ferrochelatase Met8p, N-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Siroheme synthase N-terminal domain-like
domain: Bifunctional dehydrogenase/ferrochelatase Met8p, N-terminal domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=93.27  E-value=0.023  Score=50.94  Aligned_cols=31  Identities=19%  Similarity=0.345  Sum_probs=28.9

Q ss_pred             ccEEEECCcHHHHHHHHHHHhcCCCcEEEEcc
Q psy14408        434 FDIIIVGASAAGCVLANRLSEVSSLKVLLIEA  465 (720)
Q Consensus       434 yDVVIIGSGiAGLvAA~~LAea~G~KVLVLEK  465 (720)
                      --|||||||-.|+.-|..|.++ |.+|+||..
T Consensus        14 krvLViGgG~va~~ka~~Ll~~-GA~VtVvap   44 (150)
T d1kyqa1          14 KRILLIGGGEVGLTRLYKLMPT-GCKLTLVSP   44 (150)
T ss_dssp             CEEEEEEESHHHHHHHHHHGGG-TCEEEEEEE
T ss_pred             CEEEEECCCHHHHHHHHHHHHC-CCEEEEEeC
Confidence            4799999999999999999999 999999954

>d2pv7a2 c.2.1.6 (A:92-243) Prephenate dehydrogenase TyrA {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Prephenate dehydrogenase TyrA
species: Haemophilus influenzae [TaxId: 727]

Probab=92.99  E-value=0.039  Score=49.16  Aligned_cols=31  Identities=23%  Similarity=0.410  Sum_probs=29.6

Q ss_pred             cEEEEC-CcHHHHHHHHHHHhcCCCcEEEEccC
Q psy14408        435 DIIIVG-ASAAGCVLANRLSEVSSLKVLLIEAG  466 (720)
Q Consensus       435 DVVIIG-SGiAGLvAA~~LAea~G~KVLVLEKG  466 (720)
                      -|.||| .|..|.+.|..|+++ |+.|.++|+.
T Consensus        11 kI~iIGg~G~mG~~la~~L~~~-G~~V~~~d~~   42 (152)
T d2pv7a2          11 KIVIVGGYGKLGGLFARYLRAS-GYPISILDRE   42 (152)
T ss_dssp             CEEEETTTSHHHHHHHHHHHTT-TCCEEEECTT
T ss_pred             eEEEEcCCCHHHHHHHHHHHHc-CCCcEecccc
Confidence            799999 699999999999999 9999999986

>d2gv8a2 c.3.1.5 (A:181-287) Flavin-dependent monoxygenase SPBP16F5.08c {Schizosaccharomyces pombe [TaxId: 4896]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Flavin-dependent monoxygenase SPBP16F5.08c
species: Schizosaccharomyces pombe [TaxId: 4896]

Probab=92.58  E-value=0.039  Score=46.82  Aligned_cols=33  Identities=18%  Similarity=0.289  Sum_probs=28.5

Q ss_pred             ccEEEECCcHHHHHHHHHHHhcCCCcEEEEccCC
Q psy14408        434 FDIIIVGASAAGCVLANRLSEVSSLKVLLIEAGG  467 (720)
Q Consensus       434 yDVVIIGSGiAGLvAA~~LAea~G~KVLVLEKG~  467 (720)
                      -+|+|||+|..|+=+|..|++. +.+|+++-+..
T Consensus        33 K~VlVVG~g~Sa~dia~~l~~~-ak~v~~~~~r~   65 (107)
T d2gv8a2          33 ESVLVVGGASSANDLVRHLTPV-AKHPIYQSLLG   65 (107)
T ss_dssp             CCEEEECSSHHHHHHHHHHTTT-SCSSEEEECTT
T ss_pred             CeEEEECCCCCHHHHHHHHHHh-cCEEEEEEecC
Confidence            3899999999999999999998 78877776643

>d1pjqa1 c.2.1.11 (A:1-113) Siroheme synthase CysG, domain 1 {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Siroheme synthase N-terminal domain-like
domain: Siroheme synthase CysG, domain 1
species: Salmonella typhimurium [TaxId: 90371]

Probab=92.42  E-value=0.047  Score=46.59  Aligned_cols=32  Identities=22%  Similarity=0.174  Sum_probs=29.8

Q ss_pred             ccEEEECCcHHHHHHHHHHHhcCCCcEEEEccC
Q psy14408        434 FDIIIVGASAAGCVLANRLSEVSSLKVLLIEAG  466 (720)
Q Consensus       434 yDVVIIGSGiAGLvAA~~LAea~G~KVLVLEKG  466 (720)
                      --|+|||+|-.|..-|..|.+. |.+|+|+...
T Consensus        13 k~vlVvG~G~va~~ka~~ll~~-ga~v~v~~~~   44 (113)
T d1pjqa1          13 RDCLIVGGGDVAERKARLLLEA-GARLTVNALT   44 (113)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHT-TBEEEEEESS
T ss_pred             CEEEEECCCHHHHHHHHHHHHC-CCeEEEEecc
Confidence            4899999999999999999999 9999999754

>d1dlja2 c.2.1.6 (A:1-196) UDP-glucose dehydrogenase (UDPGDH) {Streptococcus pyogenes [TaxId: 1314]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: UDP-glucose dehydrogenase (UDPGDH)
species: Streptococcus pyogenes [TaxId: 1314]

Probab=92.03  E-value=0.046  Score=50.76  Aligned_cols=29  Identities=24%  Similarity=0.329  Sum_probs=26.2

Q ss_pred             EEEECCcHHHHHHHHHHHhcCCCcEEEEccC
Q psy14408        436 IIIVGASAAGCVLANRLSEVSSLKVLLIEAG  466 (720)
Q Consensus       436 VVIIGSGiAGLvAA~~LAea~G~KVLVLEKG  466 (720)
                      |.|||.|..||.+|..|| + |++|+.+|-.
T Consensus         3 I~ViGlG~vGl~~a~~~a-~-g~~V~g~Din   31 (196)
T d1dlja2           3 IAVAGSGYVGLSLGVLLS-L-QNEVTIVDIL   31 (196)
T ss_dssp             EEEECCSHHHHHHHHHHT-T-TSEEEEECSC
T ss_pred             EEEECCChhHHHHHHHHH-C-CCcEEEEECC
Confidence            789999999999998776 6 9999999965

>d1e3ja2 c.2.1.1 (A:143-312) Ketose reductase (sorbitol dehydrogenase) {Silverleaf whitefly (Bemisia argentifolii) [TaxId: 77855]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Ketose reductase (sorbitol dehydrogenase)
species: Silverleaf whitefly (Bemisia argentifolii) [TaxId: 77855]

Probab=91.34  E-value=0.08  Score=47.62  Aligned_cols=31  Identities=16%  Similarity=0.222  Sum_probs=26.8

Q ss_pred             cEEEECCcHHHHHHHHHHHhcCCCcEEEEccC
Q psy14408        435 DIIIVGASAAGCVLANRLSEVSSLKVLLIEAG  466 (720)
Q Consensus       435 DVVIIGSGiAGLvAA~~LAea~G~KVLVLEKG  466 (720)
                      .|+|+|+|..|+.++..+... |.+|+++|+.
T Consensus        29 ~vlV~G~G~vG~~~~~~ak~~-Ga~vi~v~~~   59 (170)
T d1e3ja2          29 TVLVIGAGPIGLVSVLAAKAY-GAFVVCTARS   59 (170)
T ss_dssp             EEEEECCSHHHHHHHHHHHHT-TCEEEEEESC
T ss_pred             EEEEEcccccchhhHhhHhhh-cccccccchH
Confidence            699999999999987666555 9999999986

>d1nyta1 c.2.1.7 (A:102-271) Shikimate 5-dehydrogenase AroE {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Shikimate 5-dehydrogenase AroE
species: Escherichia coli [TaxId: 562]

Probab=90.95  E-value=0.087  Score=48.06  Aligned_cols=32  Identities=19%  Similarity=0.255  Sum_probs=29.9

Q ss_pred             ccEEEECCcHHHHHHHHHHHhcCCCcEEEEccC
Q psy14408        434 FDIIIVGASAAGCVLANRLSEVSSLKVLLIEAG  466 (720)
Q Consensus       434 yDVVIIGSGiAGLvAA~~LAea~G~KVLVLEKG  466 (720)
                      -+|+|||+|-+|-++++.|++. |.+|.|+.|.
T Consensus        19 k~vlIlGaGGaarai~~al~~~-g~~i~I~nRt   50 (170)
T d1nyta1          19 LRILLIGAGGASRGVLLPLLSL-DCAVTITNRT   50 (170)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHT-TCEEEEECSS
T ss_pred             CEEEEECCcHHHHHHHHHhccc-ceEEEeccch
Confidence            3799999999999999999999 9999999986

>d1ez4a1 c.2.1.5 (A:16-162) Lactate dehydrogenase {Lactobacillus pentosus [TaxId: 1589]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Lactate dehydrogenase
species: Lactobacillus pentosus [TaxId: 1589]

Probab=90.79  E-value=0.096  Score=47.21  Aligned_cols=31  Identities=16%  Similarity=0.396  Sum_probs=28.5

Q ss_pred             cEEEECCcHHHHHHHHHHHhcCC--CcEEEEccC
Q psy14408        435 DIIIVGASAAGCVLANRLSEVSS--LKVLLIEAG  466 (720)
Q Consensus       435 DVVIIGSGiAGLvAA~~LAea~G--~KVLVLEKG  466 (720)
                      -|.|||+|..|.++|+.|+.+ |  .+++|+|+.
T Consensus         7 KI~IIGaG~VG~~~A~~l~~~-~~~~elvL~D~~   39 (146)
T d1ez4a1           7 KVVLVGDGAVGSSYAFAMAQQ-GIAEEFVIVDVV   39 (146)
T ss_dssp             EEEEECCSHHHHHHHHHHHHH-TCCSEEEEECSS
T ss_pred             EEEEECCCHHHHHHHHHHHhc-CCCcEEEEeecc
Confidence            799999999999999999998 7  479999976

>d2pgda2 c.2.1.6 (A:1-176) 6-phosphogluconate dehydrogenase {Sheep (Ovis orientalis aries) [TaxId: 9940]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: 6-phosphogluconate dehydrogenase
species: Sheep (Ovis orientalis aries) [TaxId: 9940]

Probab=90.78  E-value=0.12  Score=47.26  Aligned_cols=33  Identities=18%  Similarity=0.230  Sum_probs=30.9

Q ss_pred             ccEEEECCcHHHHHHHHHHHhcCCCcEEEEccCC
Q psy14408        434 FDIIIVGASAAGCVLANRLSEVSSLKVLLIEAGG  467 (720)
Q Consensus       434 yDVVIIGSGiAGLvAA~~LAea~G~KVLVLEKG~  467 (720)
                      .+|-|||-|..|...|.+|+++ |++|.+.+|..
T Consensus         3 ~nIg~IGlG~MG~~mA~~L~~~-G~~V~v~dr~~   35 (176)
T d2pgda2           3 ADIALIGLAVMGQNLILNMNDH-GFVVCAFNRTV   35 (176)
T ss_dssp             BSEEEECCSHHHHHHHHHHHHT-TCCEEEECSST
T ss_pred             CcEEEEeEhHHHHHHHHHHHHC-CCeEEEEcCCH
Confidence            4899999999999999999999 99999999873

>d1pl8a2 c.2.1.1 (A:146-316) Ketose reductase (sorbitol dehydrogenase) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Ketose reductase (sorbitol dehydrogenase)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=90.54  E-value=0.1  Score=47.09  Aligned_cols=31  Identities=16%  Similarity=0.319  Sum_probs=27.3

Q ss_pred             cEEEECCcHHHHHHHHHHHhcCCC-cEEEEccC
Q psy14408        435 DIIIVGASAAGCVLANRLSEVSSL-KVLLIEAG  466 (720)
Q Consensus       435 DVVIIGSGiAGLvAA~~LAea~G~-KVLVLEKG  466 (720)
                      .|+|+|+|..|+.++..|... |. +|+++|+.
T Consensus        29 ~VlI~G~G~iG~~~~~~a~~~-G~~~Vi~~d~~   60 (171)
T d1pl8a2          29 KVLVCGAGPIGMVTLLVAKAM-GAAQVVVTDLS   60 (171)
T ss_dssp             EEEEECCSHHHHHHHHHHHHT-TCSEEEEEESC
T ss_pred             EEEEECCCccHHHHHHHHHHc-CCceEEeccCC
Confidence            699999999999988877777 87 79999976

>d1id1a_ c.2.1.9 (A:) Rck domain from putative potassium channel Kch {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Potassium channel NAD-binding domain
domain: Rck domain from putative potassium channel Kch
species: Escherichia coli [TaxId: 562]

Probab=89.92  E-value=0.14  Score=45.41  Aligned_cols=31  Identities=19%  Similarity=0.171  Sum_probs=29.3

Q ss_pred             cEEEECCcHHHHHHHHHHHhcCCCcEEEEccC
Q psy14408        435 DIIIVGASAAGCVLANRLSEVSSLKVLLIEAG  466 (720)
Q Consensus       435 DVVIIGSGiAGLvAA~~LAea~G~KVLVLEKG  466 (720)
                      -|||+|.|-.|..+|..|.++ |.+|+|||..
T Consensus         5 HiII~G~g~~g~~l~~~L~~~-~~~v~vId~d   35 (153)
T d1id1a_           5 HFIVCGHSILAINTILQLNQR-GQNVTVISNL   35 (153)
T ss_dssp             CEEEECCSHHHHHHHHHHHHT-TCCEEEEECC
T ss_pred             EEEEECCCHHHHHHHHHHHHc-CCCEEEEecc
Confidence            399999999999999999999 9999999976

>d3cuma2 c.2.1.6 (A:1-162) Hydroxyisobutyrate dehydrogenase {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Hydroxyisobutyrate dehydrogenase
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=89.78  E-value=0.12  Score=46.74  Aligned_cols=31  Identities=16%  Similarity=0.272  Sum_probs=29.4

Q ss_pred             cEEEECCcHHHHHHHHHHHhcCCCcEEEEccC
Q psy14408        435 DIIIVGASAAGCVLANRLSEVSSLKVLLIEAG  466 (720)
Q Consensus       435 DVVIIGSGiAGLvAA~~LAea~G~KVLVLEKG  466 (720)
                      -|-|||-|..|...|.+|+++ |++|.+.||.
T Consensus         3 kIg~IGlG~MG~~iA~~L~~~-g~~v~~~d~~   33 (162)
T d3cuma2           3 QIAFIGLGHMGAPMATNLLKA-GYLLNVFDLV   33 (162)
T ss_dssp             EEEEECCSTTHHHHHHHHHHT-TCEEEEECSS
T ss_pred             EEEEEEEHHHHHHHHHHHHHC-CCeEEEEECc
Confidence            388999999999999999999 9999999986

>d1djqa3 c.4.1.1 (A:341-489,A:646-729) Trimethylamine dehydrogenase, middle domain {Methylophilus methylotrophus, w3a1 [TaxId: 17]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: N-terminal domain of adrenodoxin reductase-like
domain: Trimethylamine dehydrogenase, middle domain
species: Methylophilus methylotrophus, w3a1 [TaxId: 17]

Probab=89.71  E-value=0.011  Score=56.55  Aligned_cols=36  Identities=14%  Similarity=0.117  Sum_probs=32.8

Q ss_pred             cccEEEECCcHHHHHHHHHHHhcCCCcEEEEccCCCC
Q psy14408        433 CFDIIIVGASAAGCVLANRLSEVSSLKVLLIEAGGDT  469 (720)
Q Consensus       433 eyDVVIIGSGiAGLvAA~~LAea~G~KVLVLEKG~~~  469 (720)
                      ...|+|||+|..|+-+|..|++. |.+|+|+++.+..
T Consensus       180 ~~~vvViGgG~~g~e~A~~l~~~-g~~Vtli~r~~~~  215 (233)
T d1djqa3         180 EAPRLIADATFTGHRVAREIEEA-NPQIAIPYKRETI  215 (233)
T ss_dssp             TSCCCHHHHHHHHHHHHHTTTSS-CTTSCCCCCCCCC
T ss_pred             CCceeEecCchHHHHHHHHHHhc-CCceEEEEecccc
Confidence            34799999999999999999999 9999999998654

>d1piwa2 c.2.1.1 (A:153-320) Cinnamyl alcohol dehydrogenase, ADH6 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Cinnamyl alcohol dehydrogenase, ADH6
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=89.61  E-value=0.14  Score=46.16  Aligned_cols=33  Identities=15%  Similarity=0.174  Sum_probs=26.9

Q ss_pred             cEEEECCcHHHHHHHHHHHhcCCCcEEEEccCCC
Q psy14408        435 DIIIVGASAAGCVLANRLSEVSSLKVLLIEAGGD  468 (720)
Q Consensus       435 DVVIIGSGiAGLvAA~~LAea~G~KVLVLEKG~~  468 (720)
                      -|+|+|+|..|+.++..+... |.+|+++++...
T Consensus        30 ~vlI~GaG~vG~~a~q~ak~~-G~~vi~~~~~~~   62 (168)
T d1piwa2          30 KVGIVGLGGIGSMGTLISKAM-GAETYVISRSSR   62 (168)
T ss_dssp             EEEEECCSHHHHHHHHHHHHH-TCEEEEEESSST
T ss_pred             EEEEECCCCcchhHHHHhhhc-cccccccccchh
Confidence            599999999999876655555 999999998743

>d1vpda2 c.2.1.6 (A:3-163) Hydroxyisobutyrate dehydrogenase {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Hydroxyisobutyrate dehydrogenase
species: Salmonella typhimurium [TaxId: 90371]

Probab=89.57  E-value=0.12  Score=46.45  Aligned_cols=30  Identities=10%  Similarity=0.266  Sum_probs=28.8

Q ss_pred             EEEECCcHHHHHHHHHHHhcCCCcEEEEccC
Q psy14408        436 IIIVGASAAGCVLANRLSEVSSLKVLLIEAG  466 (720)
Q Consensus       436 VVIIGSGiAGLvAA~~LAea~G~KVLVLEKG  466 (720)
                      |-|||-|..|...|.+|+++ |++|.+.||.
T Consensus         3 IgiIGlG~MG~~~A~~L~~~-G~~V~~~d~~   32 (161)
T d1vpda2           3 VGFIGLGIMGKPMSKNLLKA-GYSLVVSDRN   32 (161)
T ss_dssp             EEEECCSTTHHHHHHHHHHT-TCEEEEECSC
T ss_pred             EEEEehhHHHHHHHHHHHHC-CCeEEEEeCC
Confidence            78999999999999999999 9999999986

>d1hyha1 c.2.1.5 (A:21-166) L-2-hydroxyisocapronate dehydrogenase, L-HICDH {Lactobacillus confusus [TaxId: 1583]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: L-2-hydroxyisocapronate dehydrogenase, L-HICDH
species: Lactobacillus confusus [TaxId: 1583]

Probab=89.45  E-value=0.15  Score=45.98  Aligned_cols=31  Identities=26%  Similarity=0.430  Sum_probs=27.7

Q ss_pred             cEEEECCcHHHHHHHHHHHhcCCC--cEEEEccC
Q psy14408        435 DIIIVGASAAGCVLANRLSEVSSL--KVLLIEAG  466 (720)
Q Consensus       435 DVVIIGSGiAGLvAA~~LAea~G~--KVLVLEKG  466 (720)
                      -|.|||+|-.|.++|+.|+.+ |.  +++|+|..
T Consensus         3 KI~IIGaG~VG~~~a~~l~~~-~~~~elvL~Di~   35 (146)
T d1hyha1           3 KIGIIGLGNVGAAVAHGLIAQ-GVADDYVFIDAN   35 (146)
T ss_dssp             EEEEECCSHHHHHHHHHHHHH-TCCSEEEEECSS
T ss_pred             eEEEECcCHHHHHHHHHHHhc-CCCceEEEEecc
Confidence            489999999999999999998 74  79999975

>d1w4xa2 c.3.1.5 (A:155-389) Phenylacetone monooxygenase {Thermobifida fusca [TaxId: 2021]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Phenylacetone monooxygenase
species: Thermobifida fusca [TaxId: 2021]

Probab=89.13  E-value=0.12  Score=47.69  Aligned_cols=33  Identities=6%  Similarity=0.294  Sum_probs=29.3

Q ss_pred             ccEEEECCcHHHHHHHHHHHhcCCCcEEEEccCC
Q psy14408        434 FDIIIVGASAAGCVLANRLSEVSSLKVLLIEAGG  467 (720)
Q Consensus       434 yDVVIIGSGiAGLvAA~~LAea~G~KVLVLEKG~  467 (720)
                      -+|+|||+|..|+=+|..|+++ +.+++++=+..
T Consensus        33 K~V~VvG~G~Sa~dia~~~~~~-~~~~~~~~~~~   65 (235)
T d1w4xa2          33 QRVGVIGTGSSGIQVSPQIAKQ-AAELFVFQRTP   65 (235)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHH-BSEEEEEESSC
T ss_pred             CEEEEECCCccHHHHHHHHHhh-hcccccccccc
Confidence            3899999999999999999999 88888777654

>d1pzga1 c.2.1.5 (A:14-163) Lactate dehydrogenase {Toxoplasma gondii [TaxId: 5811]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Lactate dehydrogenase
species: Toxoplasma gondii [TaxId: 5811]

Probab=89.05  E-value=0.21  Score=45.19  Aligned_cols=34  Identities=15%  Similarity=0.200  Sum_probs=29.7

Q ss_pred             cccEEEECCcHHHHHHHHHHHhcCCC-cEEEEccCC
Q psy14408        433 CFDIIIVGASAAGCVLANRLSEVSSL-KVLLIEAGG  467 (720)
Q Consensus       433 eyDVVIIGSGiAGLvAA~~LAea~G~-KVLVLEKG~  467 (720)
                      ..-|.|||+|-.|.++|+.|+.. |+ +++|+|...
T Consensus         7 ~~KI~IIGaG~VG~~lA~~l~~~-~~~el~L~D~~~   41 (154)
T d1pzga1           7 RKKVAMIGSGMIGGTMGYLCALR-ELADVVLYDVVK   41 (154)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHH-TCCEEEEECSSS
T ss_pred             CCcEEEECCCHHHHHHHHHHHhC-CCceEEEEEecc
Confidence            45899999999999999999998 75 799999764

>d1llua2 c.2.1.1 (A:144-309) Alcohol dehydrogenase {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=88.89  E-value=0.17  Score=45.24  Aligned_cols=31  Identities=23%  Similarity=0.263  Sum_probs=26.1

Q ss_pred             cEEEECCcHHHHHHHHHHHhcCCCcEEEEccC
Q psy14408        435 DIIIVGASAAGCVLANRLSEVSSLKVLLIEAG  466 (720)
Q Consensus       435 DVVIIGSGiAGLvAA~~LAea~G~KVLVLEKG  466 (720)
                      .|+|+|+|..|+.++..+... |.+|+++|+.
T Consensus        30 ~VlV~GaG~vG~~~~~~ak~~-G~~Vi~~~~~   60 (166)
T d1llua2          30 WVAISGIGGLGHVAVQYARAM-GLHVAAIDID   60 (166)
T ss_dssp             EEEEECCSHHHHHHHHHHHHT-TCEEEEEESC
T ss_pred             EEEEeeccccHHHHHHHHHHc-CCccceecch
Confidence            699999999999976655545 9999999976

>d1ldna1 c.2.1.5 (A:15-162) Lactate dehydrogenase {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Lactate dehydrogenase
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=88.82  E-value=0.2  Score=45.01  Aligned_cols=33  Identities=21%  Similarity=0.428  Sum_probs=29.2

Q ss_pred             cccEEEECCcHHHHHHHHHHHhcCCC--cEEEEccC
Q psy14408        433 CFDIIIVGASAAGCVLANRLSEVSSL--KVLLIEAG  466 (720)
Q Consensus       433 eyDVVIIGSGiAGLvAA~~LAea~G~--KVLVLEKG  466 (720)
                      ..-|.|||+|-.|.++|+.|+.. |+  +++|+|..
T Consensus         6 ~~KI~IiGaG~vG~~~a~~l~~~-~l~~el~L~Di~   40 (148)
T d1ldna1           6 GARVVVIGAGFVGASYVFALMNQ-GIADEIVLIDAN   40 (148)
T ss_dssp             SCEEEEECCSHHHHHHHHHHHHH-TCCSEEEEECSS
T ss_pred             CCeEEEECcCHHHHHHHHHHHhc-CCCceEEEEeec
Confidence            34799999999999999999998 75  69999975

>d1uxja1 c.2.1.5 (A:2-143) Malate dehydrogenase {Chloroflexus aurantiacus [TaxId: 1108]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Malate dehydrogenase
species: Chloroflexus aurantiacus [TaxId: 1108]

Probab=88.56  E-value=0.2  Score=44.68  Aligned_cols=32  Identities=28%  Similarity=0.439  Sum_probs=28.1

Q ss_pred             cEEEECCcHHHHHHHHHHHhcCCC-cEEEEccCC
Q psy14408        435 DIIIVGASAAGCVLANRLSEVSSL-KVLLIEAGG  467 (720)
Q Consensus       435 DVVIIGSGiAGLvAA~~LAea~G~-KVLVLEKG~  467 (720)
                      -|.|||+|-.|.++|+.|+.. |+ .++++|...
T Consensus         3 KI~IIGaG~VG~~~A~~l~~~-~l~dl~l~D~~~   35 (142)
T d1uxja1           3 KISIIGAGFVGSTTAHWLAAK-ELGDIVLLDIVE   35 (142)
T ss_dssp             EEEEECCSHHHHHHHHHHHHH-TCSEEEEECSSS
T ss_pred             eEEEECCCHHHHHHHHHHHhC-CcceEEEEeecc
Confidence            589999999999999999998 65 899999753

>d2g5ca2 c.2.1.6 (A:30-200) Prephenate dehydrogenase TyrA {Aquifex aeolicus [TaxId: 63363]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Prephenate dehydrogenase TyrA
species: Aquifex aeolicus [TaxId: 63363]

Probab=88.47  E-value=0.2  Score=44.88  Aligned_cols=31  Identities=23%  Similarity=0.402  Sum_probs=27.7

Q ss_pred             cEEEECCcHHHHHHHHHHHhcCCC--cEEEEccC
Q psy14408        435 DIIIVGASAAGCVLANRLSEVSSL--KVLLIEAG  466 (720)
Q Consensus       435 DVVIIGSGiAGLvAA~~LAea~G~--KVLVLEKG  466 (720)
                      .|.|||.|..|.+.|+.|.+. |+  +|..+|+.
T Consensus         3 ~I~IIG~G~mG~sla~~L~~~-g~~~~I~~~D~~   35 (171)
T d2g5ca2           3 NVLIVGVGFMGGSFAKSLRRS-GFKGKIYGYDIN   35 (171)
T ss_dssp             EEEEESCSHHHHHHHHHHHHT-TCCSEEEEECSC
T ss_pred             EEEEEccCHHHHHHHHHHHhc-CCCeEEEEEECC
Confidence            489999999999999999998 85  68888986

>d1pgja2 c.2.1.6 (A:1-178) 6-phosphogluconate dehydrogenase {Trypanosoma brucei [TaxId: 5691]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: 6-phosphogluconate dehydrogenase
species: Trypanosoma brucei [TaxId: 5691]

Probab=88.35  E-value=0.21  Score=45.27  Aligned_cols=31  Identities=29%  Similarity=0.423  Sum_probs=29.3

Q ss_pred             cEEEECCcHHHHHHHHHHHhcCCCcEEEEccC
Q psy14408        435 DIIIVGASAAGCVLANRLSEVSSLKVLLIEAG  466 (720)
Q Consensus       435 DVVIIGSGiAGLvAA~~LAea~G~KVLVLEKG  466 (720)
                      .|-|||-|..|...|.+|+++ |++|.+.||.
T Consensus         3 kIGvIGlG~MG~~ma~~L~~~-G~~V~~~dr~   33 (178)
T d1pgja2           3 DVGVVGLGVMGANLALNIAEK-GFKVAVFNRT   33 (178)
T ss_dssp             SEEEECCSHHHHHHHHHHHHT-TCCEEEECSS
T ss_pred             EEEEEeehHHHHHHHHHHHHC-CCeEEEEECC
Confidence            588999999999999999999 9999999986

>d1luaa1 c.2.1.7 (A:98-288) Methylene-tetrahydromethanopterin dehydrogenase {Methylobacterium extorquens [TaxId: 408]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Methylene-tetrahydromethanopterin dehydrogenase
species: Methylobacterium extorquens [TaxId: 408]

Probab=88.29  E-value=0.19  Score=46.41  Aligned_cols=32  Identities=16%  Similarity=0.171  Sum_probs=29.2

Q ss_pred             ccEEEEC-CcHHHHHHHHHHHhcCCCcEEEEccC
Q psy14408        434 FDIIIVG-ASAAGCVLANRLSEVSSLKVLLIEAG  466 (720)
Q Consensus       434 yDVVIIG-SGiAGLvAA~~LAea~G~KVLVLEKG  466 (720)
                      --|||.| +|-.|..+|..|+++ |.+|++++|.
T Consensus        24 K~vlItGasgGIG~~ia~~la~~-G~~V~~~~r~   56 (191)
T d1luaa1          24 KKAVVLAGTGPVGMRSAALLAGE-GAEVVLCGRK   56 (191)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHT-TCEEEEEESS
T ss_pred             CEEEEECCCHHHHHHHHHHHHhh-ccchhhcccc
Confidence            3688888 699999999999999 9999999987

>d1llda1 c.2.1.5 (A:7-149) Lactate dehydrogenase {Bifidobacterium longum, strain am101-2 [TaxId: 216816]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Lactate dehydrogenase
species: Bifidobacterium longum, strain am101-2 [TaxId: 216816]

Probab=88.10  E-value=0.22  Score=44.68  Aligned_cols=31  Identities=23%  Similarity=0.459  Sum_probs=27.9

Q ss_pred             cEEEECCcHHHHHHHHHHHhcCCC--cEEEEccC
Q psy14408        435 DIIIVGASAAGCVLANRLSEVSSL--KVLLIEAG  466 (720)
Q Consensus       435 DVVIIGSGiAGLvAA~~LAea~G~--KVLVLEKG  466 (720)
                      -|.|||+|-.|.++|+.|+.+ |+  +++|+|..
T Consensus         3 Ki~IIGaG~VG~~~a~~l~~~-~l~~ElvL~D~~   35 (143)
T d1llda1           3 KLAVIGAGAVGSTLAFAAAQR-GIAREIVLEDIA   35 (143)
T ss_dssp             EEEEECCSHHHHHHHHHHHHT-TCCSEEEEECSS
T ss_pred             EEEEECCCHHHHHHHHHHHhc-CCCcEEEEEEec
Confidence            489999999999999999998 76  79999975

>d1npya1 c.2.1.7 (A:103-269) Shikimate 5-dehydrogenase-like protein HI0607 {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Shikimate 5-dehydrogenase-like protein HI0607
species: Haemophilus influenzae [TaxId: 727]

Probab=87.97  E-value=0.22  Score=45.27  Aligned_cols=32  Identities=9%  Similarity=0.234  Sum_probs=29.3

Q ss_pred             ccEEEECCcHHHHHHHHHHHhcCCC-cEEEEccC
Q psy14408        434 FDIIIVGASAAGCVLANRLSEVSSL-KVLLIEAG  466 (720)
Q Consensus       434 yDVVIIGSGiAGLvAA~~LAea~G~-KVLVLEKG  466 (720)
                      -.|+|||+|-+|-++++.|++. |. +|.|+.|.
T Consensus        18 ~~vlIlGaGGaarai~~aL~~~-g~~~I~I~nR~   50 (167)
T d1npya1          18 AKVIVHGSGGMAKAVVAAFKNS-GFEKLKIYARN   50 (167)
T ss_dssp             SCEEEECSSTTHHHHHHHHHHT-TCCCEEEECSC
T ss_pred             CeEEEECCCHHHHHHHHHHHHC-CCCEEEEeccc
Confidence            4899999999999999999999 86 79999886

>d1i0za1 c.2.1.5 (A:1-160) Lactate dehydrogenase {Human (Homo sapiens), heart isoform (H chain) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Lactate dehydrogenase
species: Human (Homo sapiens), heart isoform (H chain) [TaxId: 9606]

Probab=87.88  E-value=0.22  Score=45.60  Aligned_cols=33  Identities=24%  Similarity=0.283  Sum_probs=30.0

Q ss_pred             cccEEEECCcHHHHHHHHHHHhcCCC--cEEEEccC
Q psy14408        433 CFDIIIVGASAAGCVLANRLSEVSSL--KVLLIEAG  466 (720)
Q Consensus       433 eyDVVIIGSGiAGLvAA~~LAea~G~--KVLVLEKG  466 (720)
                      ..-|.|||+|-.|.++|+.|+.. |+  +++|+|+.
T Consensus        20 ~~KV~IIGaG~VG~~~A~~l~~~-~l~~ElvLiD~~   54 (160)
T d1i0za1          20 NNKITVVGVGQVGMACAISILGK-SLADELALVDVL   54 (160)
T ss_dssp             SSEEEEECCSHHHHHHHHHHHHT-TCCSEEEEECSC
T ss_pred             CCeEEEECCCHHHHHHHHHHHhc-CCCcEEEEEEec
Confidence            45899999999999999999998 76  79999975

>d1y6ja1 c.2.1.5 (A:7-148) Lactate dehydrogenase {Clostridium thermocellum [TaxId: 1515]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Lactate dehydrogenase
species: Clostridium thermocellum [TaxId: 1515]

Probab=87.57  E-value=0.24  Score=44.16  Aligned_cols=33  Identities=21%  Similarity=0.316  Sum_probs=28.2

Q ss_pred             cEEEECCcHHHHHHHHHHHhcCCC--cEEEEccCCC
Q psy14408        435 DIIIVGASAAGCVLANRLSEVSSL--KVLLIEAGGD  468 (720)
Q Consensus       435 DVVIIGSGiAGLvAA~~LAea~G~--KVLVLEKG~~  468 (720)
                      -|.|||+|-.|.++|+.|+.+ |+  +++|+|....
T Consensus         3 KI~IIGaG~VG~~~a~~l~~~-~l~~el~L~D~~~~   37 (142)
T d1y6ja1           3 KVAIIGAGFVGASAAFTMALR-QTANELVLIDVFKE   37 (142)
T ss_dssp             CEEEECCSHHHHHHHHHHHHT-TCSSEEEEECCC--
T ss_pred             eEEEECCCHHHHHHHHHHHhc-CCCCEEEEEeccCC
Confidence            589999999999999999998 76  7999997643

>d1qyca_ c.2.1.2 (A:) Phenylcoumaran benzylic ether reductase {Loblolly pine (Pinus taeda) [TaxId: 3352]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Phenylcoumaran benzylic ether reductase
species: Loblolly pine (Pinus taeda) [TaxId: 3352]

Probab=86.67  E-value=0.26  Score=46.34  Aligned_cols=33  Identities=18%  Similarity=0.302  Sum_probs=30.5

Q ss_pred             cEEEECC-cHHHHHHHHHHHhcCCCcEEEEccCCC
Q psy14408        435 DIIIVGA-SAAGCVLANRLSEVSSLKVLLIEAGGD  468 (720)
Q Consensus       435 DVVIIGS-GiAGLvAA~~LAea~G~KVLVLEKG~~  468 (720)
                      -|+|+|| |..|-.++..|.++ |++|.++.|+..
T Consensus         5 KILVtGatG~iG~~l~~~L~~~-G~~V~~l~R~~~   38 (307)
T d1qyca_           5 RILLIGATGYIGRHVAKASLDL-GHPTFLLVREST   38 (307)
T ss_dssp             CEEEESTTSTTHHHHHHHHHHT-TCCEEEECCCCC
T ss_pred             EEEEECCCcHHHHHHHHHHHHC-CCeEEEEECCCc
Confidence            6999997 99999999999999 999999999744

>d1vj0a2 c.2.1.1 (A:156-337) Hypothetical protein TM0436 {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Hypothetical protein TM0436
species: Thermotoga maritima [TaxId: 2336]

Probab=86.48  E-value=0.26  Score=44.79  Aligned_cols=31  Identities=19%  Similarity=0.292  Sum_probs=25.9

Q ss_pred             cEEEECCcHHHHHHHHHHHhcCCC-cEEEEccC
Q psy14408        435 DIIIVGASAAGCVLANRLSEVSSL-KVLLIEAG  466 (720)
Q Consensus       435 DVVIIGSGiAGLvAA~~LAea~G~-KVLVLEKG  466 (720)
                      .|+|+|+|..|+.++..+... |. +|+++|+.
T Consensus        31 ~VlV~GaG~iG~~~~~~ak~~-Ga~~Vi~~~~~   62 (182)
T d1vj0a2          31 TVVIQGAGPLGLFGVVIARSL-GAENVIVIAGS   62 (182)
T ss_dssp             EEEEECCSHHHHHHHHHHHHT-TBSEEEEEESC
T ss_pred             EEEEECCCccchhheeccccc-ccccccccccc
Confidence            689999999998877666666 97 79999986

>d1guza1 c.2.1.5 (A:1-142) Malate dehydrogenase {Chlorobium vibrioforme [TaxId: 1098]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Malate dehydrogenase
species: Chlorobium vibrioforme [TaxId: 1098]

Probab=86.47  E-value=0.32  Score=43.06  Aligned_cols=32  Identities=31%  Similarity=0.528  Sum_probs=28.3

Q ss_pred             cEEEECCcHHHHHHHHHHHhcCCC--cEEEEccCC
Q psy14408        435 DIIIVGASAAGCVLANRLSEVSSL--KVLLIEAGG  467 (720)
Q Consensus       435 DVVIIGSGiAGLvAA~~LAea~G~--KVLVLEKG~  467 (720)
                      .|.|||+|-.|.++|+.|+.. |.  ++.|+|...
T Consensus         2 KI~IIGaG~VG~~la~~l~~~-~l~~el~L~Di~~   35 (142)
T d1guza1           2 KITVIGAGNVGATTAFRLAEK-QLARELVLLDVVE   35 (142)
T ss_dssp             EEEEECCSHHHHHHHHHHHHT-TCCSEEEEECSSS
T ss_pred             EEEEECcCHHHHHHHHHHHhC-CCCceEEEecccc
Confidence            489999999999999999998 64  799999764

>d2ldxa1 c.2.1.5 (A:1-159) Lactate dehydrogenase {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Lactate dehydrogenase
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=86.25  E-value=0.34  Score=44.20  Aligned_cols=32  Identities=25%  Similarity=0.365  Sum_probs=28.8

Q ss_pred             ccEEEECCcHHHHHHHHHHHhcCCC--cEEEEccC
Q psy14408        434 FDIIIVGASAAGCVLANRLSEVSSL--KVLLIEAG  466 (720)
Q Consensus       434 yDVVIIGSGiAGLvAA~~LAea~G~--KVLVLEKG  466 (720)
                      .-|.|||+|-.|.++|+.|+.. |+  +++|+|+.
T Consensus        20 ~KI~IIGaG~VG~~~A~~l~~~-~l~~elvL~D~~   53 (159)
T d2ldxa1          20 CKITVVGVGDVGMACAISILLK-GLADELALVDAD   53 (159)
T ss_dssp             CEEEEECCSHHHHHHHHHHHTT-TSCSEEEEECSC
T ss_pred             CeEEEECCCHHHHHHHHHHHhc-CCCCEEEEEeCC
Confidence            4699999999999999999998 76  79999975

>d1i36a2 c.2.1.6 (A:1-152) Conserved hypothetical protein MTH1747 {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Conserved hypothetical protein MTH1747
species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]

Probab=85.65  E-value=0.32  Score=43.03  Aligned_cols=31  Identities=23%  Similarity=0.309  Sum_probs=28.7

Q ss_pred             cEEEECCcHHHHHHHHHHHhcCCCcEEEEccC
Q psy14408        435 DIIIVGASAAGCVLANRLSEVSSLKVLLIEAG  466 (720)
Q Consensus       435 DVVIIGSGiAGLvAA~~LAea~G~KVLVLEKG  466 (720)
                      .|-|||.|..|...|..|+++ |++|++.++.
T Consensus         2 kIgiIG~G~mG~~ia~~l~~~-g~~v~~~~~~   32 (152)
T d1i36a2           2 RVGFIGFGEVAQTLASRLRSR-GVEVVTSLEG   32 (152)
T ss_dssp             EEEEESCSHHHHHHHHHHHHT-TCEEEECCTT
T ss_pred             EEEEEcHHHHHHHHHHHHHHC-CCeEEEEcCc
Confidence            378999999999999999999 9999999876

>d1rjwa2 c.2.1.1 (A:138-305) Alcohol dehydrogenase {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=85.65  E-value=0.29  Score=43.36  Aligned_cols=31  Identities=23%  Similarity=0.359  Sum_probs=25.5

Q ss_pred             cEEEECCcHHHHHHHHHHHhcCCCcEEEEccC
Q psy14408        435 DIIIVGASAAGCVLANRLSEVSSLKVLLIEAG  466 (720)
Q Consensus       435 DVVIIGSGiAGLvAA~~LAea~G~KVLVLEKG  466 (720)
                      -|+|+|+|..|+.++..+... |.+|+++++.
T Consensus        30 ~vlv~G~G~iG~~a~~~a~~~-g~~v~~~~~~   60 (168)
T d1rjwa2          30 WVAIYGIGGLGHVAVQYAKAM-GLNVVAVDIG   60 (168)
T ss_dssp             EEEEECCSTTHHHHHHHHHHT-TCEEEEECSC
T ss_pred             EEEEeecccchhhhhHHHhcC-CCeEeccCCC
Confidence            589999999998865555555 9999999975

>d1d7ya2 c.3.1.5 (A:116-236) NADH-dependent ferredoxin reductase, BphA4 {Pseudomonas sp., KKS102 [TaxId: 306]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: NADH-dependent ferredoxin reductase, BphA4
species: Pseudomonas sp., KKS102 [TaxId: 306]

Probab=85.02  E-value=0.53  Score=40.44  Aligned_cols=46  Identities=20%  Similarity=0.292  Sum_probs=33.5

Q ss_pred             HHHHHHHhcCCCeEEEcCeEEEEEEEccCCcEEEEEEEecCCcEEEEEcCcEEEEccC
Q psy14408        638 AYLTPIAGKRTNLYVLKRSKVTKVIINDQNVATGVEYVNSKGETVRVTANKEVILTAG  695 (720)
Q Consensus       638 a~L~~Aa~e~aGVkIi~gt~VtkIl~e~gGrAtGV~v~dt~G~e~tIkAkK~VVVAAG  695 (720)
                      .++.+.. ++.|++|++++.|+++.   ++.   |.+.  +|+  +|.|+ .||+|+|
T Consensus        76 ~~~~~~l-~~~GV~i~~~~~v~~~~---~~~---v~l~--dg~--~i~~D-~vi~a~G  121 (121)
T d1d7ya2          76 DFVARYH-AAQGVDLRFERSVTGSV---DGV---VLLD--DGT--RIAAD-MVVVGIG  121 (121)
T ss_dssp             HHHHHHH-HTTTCEEEESCCEEEEE---TTE---EEET--TSC--EEECS-EEEECSC
T ss_pred             HHHHHHH-HHCCcEEEeCCEEEEEe---CCE---EEEC--CCC--EEECC-EEEEeeC
Confidence            4555555 58899999999999875   232   3333  464  78998 5999988

>d1cdoa2 c.2.1.1 (A:165-339) Alcohol dehydrogenase {Cod (Gadus callarias) [TaxId: 8053]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Cod (Gadus callarias) [TaxId: 8053]

Probab=84.88  E-value=0.38  Score=43.09  Aligned_cols=33  Identities=9%  Similarity=0.197  Sum_probs=27.5

Q ss_pred             cEEEECCcHHHHHHHHHHHhcCCCcEEEEccCC
Q psy14408        435 DIIIVGASAAGCVLANRLSEVSSLKVLLIEAGG  467 (720)
Q Consensus       435 DVVIIGSGiAGLvAA~~LAea~G~KVLVLEKG~  467 (720)
                      -|+|+|+|..|+.++..++...+.+|+++|+.+
T Consensus        31 ~VlI~G~Gg~g~~~~~~~~~~g~~~Vi~~~~~~   63 (175)
T d1cdoa2          31 TCAVFGLGAVGLAAVMGCHSAGAKRIIAVDLNP   63 (175)
T ss_dssp             EEEEECCSHHHHHHHHHHHHTTCSEEEEECSCG
T ss_pred             EEEEEecCCccchHHHHHHHHhhchheeecchH
Confidence            388999999999999999988345788898763

>d1qyda_ c.2.1.2 (A:) Pinoresinol-lariciresinol reductase {Giant arborvitae (Thuja plicata) [TaxId: 3316]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Pinoresinol-lariciresinol reductase
species: Giant arborvitae (Thuja plicata) [TaxId: 3316]

Probab=84.70  E-value=0.4  Score=45.46  Aligned_cols=32  Identities=16%  Similarity=0.201  Sum_probs=29.5

Q ss_pred             cEEEECC-cHHHHHHHHHHHhcCCCcEEEEccCC
Q psy14408        435 DIIIVGA-SAAGCVLANRLSEVSSLKVLLIEAGG  467 (720)
Q Consensus       435 DVVIIGS-GiAGLvAA~~LAea~G~KVLVLEKG~  467 (720)
                      -|+|+|| |..|..++.+|.++ |++|+++.|..
T Consensus         5 KILVtGatG~iG~~l~~~L~~~-G~~V~~~~R~~   37 (312)
T d1qyda_           5 RVLIVGGTGYIGKRIVNASISL-GHPTYVLFRPE   37 (312)
T ss_dssp             CEEEESTTSTTHHHHHHHHHHT-TCCEEEECCSC
T ss_pred             EEEEECCCCHHHHHHHHHHHhC-CCEEEEEECCC
Confidence            4999996 99999999999999 99999999864

>d1fjha_ c.2.1.2 (A:) 3-alpha-hydroxysteroid dehydrogenase {Comamonas testosteroni [TaxId: 285]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: 3-alpha-hydroxysteroid dehydrogenase
species: Comamonas testosteroni [TaxId: 285]

Probab=84.55  E-value=0.39  Score=45.32  Aligned_cols=31  Identities=19%  Similarity=0.349  Sum_probs=25.9

Q ss_pred             EEEECC-cHHHHHHHHHHHhcCCCcEEEEccCC
Q psy14408        436 IIIVGA-SAAGCVLANRLSEVSSLKVLLIEAGG  467 (720)
Q Consensus       436 VVIIGS-GiAGLvAA~~LAea~G~KVLVLEKG~  467 (720)
                      |||.|| |-.|+++|.+|+++ |.+|+++++..
T Consensus         4 vlITGas~GIG~aiA~~la~~-Ga~V~~~~~~~   35 (257)
T d1fjha_           4 IVISGCATGIGAATRKVLEAA-GHQIVGIDIRD   35 (257)
T ss_dssp             EEEETTTSHHHHHHHHHHHHT-TCEEEEEESSS
T ss_pred             EEEeCCCCHHHHHHHHHHHHC-CCEEEEEECCh
Confidence            455564 66899999999999 99999999863

>d1hyea1 c.2.1.5 (A:1-145) MJ0490, lactate/malate dehydrogenase {Archaeon Methanococcus jannaschii [TaxId: 2190]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: MJ0490, lactate/malate dehydrogenase
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

Probab=84.45  E-value=0.39  Score=43.05  Aligned_cols=31  Identities=26%  Similarity=0.414  Sum_probs=27.3

Q ss_pred             cEEEECC-cHHHHHHHHHHHhcCCC--cEEEEccC
Q psy14408        435 DIIIVGA-SAAGCVLANRLSEVSSL--KVLLIEAG  466 (720)
Q Consensus       435 DVVIIGS-GiAGLvAA~~LAea~G~--KVLVLEKG  466 (720)
                      .|.|||+ |-.|.++|+.|+.+ |+  +++|+|..
T Consensus         2 KV~IiGA~G~VG~~~a~~l~~~-~l~~el~L~D~~   35 (145)
T d1hyea1           2 KVTIIGASGRVGSATALLLAKE-PFMKDLVLIGRE   35 (145)
T ss_dssp             EEEEETTTSHHHHHHHHHHHTC-TTCCEEEEEECG
T ss_pred             EEEEECCCChHHHHHHHHHHhC-Ccccccccccch
Confidence            4899995 99999999999998 74  78999875

>d1jw9b_ c.111.1.1 (B:) Molybdenum cofactor biosynthesis protein MoeB {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Activating enzymes of the ubiquitin-like proteins
superfamily: Activating enzymes of the ubiquitin-like proteins
family: Molybdenum cofactor biosynthesis protein MoeB
domain: Molybdenum cofactor biosynthesis protein MoeB
species: Escherichia coli [TaxId: 562]

Probab=84.41  E-value=0.35  Score=46.11  Aligned_cols=34  Identities=21%  Similarity=0.450  Sum_probs=30.2

Q ss_pred             CcccEEEECCcHHHHHHHHHHHhcCCC-cEEEEccC
Q psy14408        432 DCFDIIIVGASAAGCVLANRLSEVSSL-KVLLIEAG  466 (720)
Q Consensus       432 ~eyDVVIIGSGiAGLvAA~~LAea~G~-KVLVLEKG  466 (720)
                      .+.-|+|||+|-.|..+|..||+. |. +++|+|..
T Consensus        29 ~~~~VliiG~GglGs~va~~La~~-Gvg~i~lvD~D   63 (247)
T d1jw9b_          29 KDSRVLIVGLGGLGCAASQYLASA-GVGNLTLLDFD   63 (247)
T ss_dssp             HHCEEEEECCSHHHHHHHHHHHHH-TCSEEEEECCC
T ss_pred             hCCCEEEECCCHHHHHHHHHHHHc-CCCeEEEECCc
Confidence            456999999999999999999999 97 68888865

>d1jqba2 c.2.1.1 (A:1140-1313) Bacterial secondary alcohol dehydrogenase {Clostridium beijerinckii [TaxId: 1520]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Bacterial secondary alcohol dehydrogenase
species: Clostridium beijerinckii [TaxId: 1520]

Probab=84.34  E-value=0.42  Score=43.51  Aligned_cols=31  Identities=10%  Similarity=0.235  Sum_probs=26.0

Q ss_pred             cEEEECCcHHHHHHHHHHHhcCCC-cEEEEccC
Q psy14408        435 DIIIVGASAAGCVLANRLSEVSSL-KVLLIEAG  466 (720)
Q Consensus       435 DVVIIGSGiAGLvAA~~LAea~G~-KVLVLEKG  466 (720)
                      .|+|+|+|..|+.++..+... |. +|+++|+.
T Consensus        30 ~VlI~GaG~vGl~~~q~ak~~-Ga~~Vi~~d~~   61 (174)
T d1jqba2          30 SVVVIGIGAVGLMGIAGAKLR-GAGRIIGVGSR   61 (174)
T ss_dssp             CEEEECCSHHHHHHHHHHHTT-TCSCEEEECCC
T ss_pred             EEEEEcCCcchhhhhhhhhcc-cccccccccch
Confidence            799999999999877666666 86 79999976

>d1d1ta2 c.2.1.1 (A:163-338) Alcohol dehydrogenase {Human (Homo sapiens), different isozymes [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Human (Homo sapiens), different isozymes [TaxId: 9606]

Probab=84.31  E-value=0.39  Score=43.80  Aligned_cols=32  Identities=9%  Similarity=0.207  Sum_probs=27.9

Q ss_pred             cEEEECCcHHHHHHHHHHHhcCC-CcEEEEccCC
Q psy14408        435 DIIIVGASAAGCVLANRLSEVSS-LKVLLIEAGG  467 (720)
Q Consensus       435 DVVIIGSGiAGLvAA~~LAea~G-~KVLVLEKG~  467 (720)
                      -|+|+|+|..|+.++..+... | .+|+++|...
T Consensus        32 tVlI~G~GgvGl~ai~~ak~~-G~~~Vi~vd~~~   64 (176)
T d1d1ta2          32 TCVVFGLGGVGLSVIMGCKSA-GASRIIGIDLNK   64 (176)
T ss_dssp             EEEEECCSHHHHHHHHHHHHT-TCSEEEEECSCG
T ss_pred             EEEEECCCchhHHHHHHHHHc-CCceEEEecCcH
Confidence            399999999999999998887 7 5799999863

>d1uufa2 c.2.1.1 (A:145-312) Hypothetical protein YahK {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Hypothetical protein YahK
species: Escherichia coli [TaxId: 562]

Probab=84.17  E-value=0.43  Score=42.72  Aligned_cols=31  Identities=16%  Similarity=0.275  Sum_probs=25.3

Q ss_pred             cEEEECCcHHHHHHHHHHHhcCCCcEEEEccC
Q psy14408        435 DIIIVGASAAGCVLANRLSEVSSLKVLLIEAG  466 (720)
Q Consensus       435 DVVIIGSGiAGLvAA~~LAea~G~KVLVLEKG  466 (720)
                      .|+|+|+|..|+.++ +||+..|.+|+++++.
T Consensus        33 ~VlI~GaG~vG~~a~-qlak~~Ga~~i~~~~~   63 (168)
T d1uufa2          33 KVGVVGIGGLGHMGI-KLAHAMGAHVVAFTTS   63 (168)
T ss_dssp             EEEEECCSHHHHHHH-HHHHHTTCEEEEEESS
T ss_pred             EEEEeccchHHHHHH-HHhhcccccchhhccc
Confidence            699999999998876 4555449999999876

>d1ojua1 c.2.1.5 (A:22-163) Malate dehydrogenase {Archaeon Archaeoglobus fulgidus [TaxId: 2234]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Malate dehydrogenase
species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]

Probab=84.10  E-value=0.45  Score=42.36  Aligned_cols=31  Identities=19%  Similarity=0.149  Sum_probs=27.5

Q ss_pred             cEEEECCcHHHHHHHHHHHhcCCC--cEEEEccC
Q psy14408        435 DIIIVGASAAGCVLANRLSEVSSL--KVLLIEAG  466 (720)
Q Consensus       435 DVVIIGSGiAGLvAA~~LAea~G~--KVLVLEKG  466 (720)
                      .|.|||+|-.|.++|+.|+.+ |.  +++|+|..
T Consensus         2 KI~IIGaG~VG~~~a~~l~~~-~~~~elvL~Di~   34 (142)
T d1ojua1           2 KLGFVGAGRVGSTSAFTCLLN-LDVDEIALVDIA   34 (142)
T ss_dssp             EEEEECCSHHHHHHHHHHHHH-SCCSEEEEECSS
T ss_pred             EEEEECcCHHHHHHHHHHHhc-CcCceEEEEecc
Confidence            489999999999999999988 64  59999975

>d1kola2 c.2.1.1 (A:161-355) Formaldehyde dehydrogenase {Pseudomonas putida [TaxId: 303]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Formaldehyde dehydrogenase
species: Pseudomonas putida [TaxId: 303]

Probab=83.70  E-value=0.43  Score=44.40  Aligned_cols=31  Identities=16%  Similarity=0.236  Sum_probs=25.9

Q ss_pred             cEEEECCcHHHHHHHHHHHhcCCC-cEEEEccC
Q psy14408        435 DIIIVGASAAGCVLANRLSEVSSL-KVLLIEAG  466 (720)
Q Consensus       435 DVVIIGSGiAGLvAA~~LAea~G~-KVLVLEKG  466 (720)
                      .|+|+|+|..|+.+|..+... |. +|+++|..
T Consensus        28 tVlV~GaG~vGl~a~~~ak~~-ga~~Vi~~d~~   59 (195)
T d1kola2          28 TVYVAGAGPVGLAAAASARLL-GAAVVIVGDLN   59 (195)
T ss_dssp             EEEEECCSHHHHHHHHHHHHT-TCSEEEEEESC
T ss_pred             EEEEECcCHHHHHHHHHHHhh-cccceeeeccc
Confidence            899999999998888877666 55 78888875

>d1p77a1 c.2.1.7 (A:102-272) Shikimate 5-dehydrogenase AroE {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Shikimate 5-dehydrogenase AroE
species: Haemophilus influenzae [TaxId: 727]

Probab=83.52  E-value=0.34  Score=44.24  Aligned_cols=32  Identities=19%  Similarity=0.228  Sum_probs=29.5

Q ss_pred             ccEEEECCcHHHHHHHHHHHhcCCCcEEEEccC
Q psy14408        434 FDIIIVGASAAGCVLANRLSEVSSLKVLLIEAG  466 (720)
Q Consensus       434 yDVVIIGSGiAGLvAA~~LAea~G~KVLVLEKG  466 (720)
                      -.|+|+|+|-+|-++++.|.+. +.+|.|+-|.
T Consensus        19 k~vlIlGaGGaarai~~aL~~~-~~~i~I~nR~   50 (171)
T d1p77a1          19 QHVLILGAGGATKGVLLPLLQA-QQNIVLANRT   50 (171)
T ss_dssp             CEEEEECCSHHHHTTHHHHHHT-TCEEEEEESS
T ss_pred             CEEEEECCcHHHHHHHHHHccc-Cceeeeccch
Confidence            3799999999999999999987 8999999986

>d1a5za1 c.2.1.5 (A:22-163) Lactate dehydrogenase {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Lactate dehydrogenase
species: Thermotoga maritima [TaxId: 2336]

Probab=83.27  E-value=0.5  Score=41.80  Aligned_cols=31  Identities=29%  Similarity=0.344  Sum_probs=27.2

Q ss_pred             cEEEECCcHHHHHHHHHHHhcCCC--cEEEEccC
Q psy14408        435 DIIIVGASAAGCVLANRLSEVSSL--KVLLIEAG  466 (720)
Q Consensus       435 DVVIIGSGiAGLvAA~~LAea~G~--KVLVLEKG  466 (720)
                      .|.|||+|-.|.++|+.|+.+ |+  +++|+|..
T Consensus         2 KI~IIGaG~VG~~~a~~l~~~-~l~~el~L~Di~   34 (140)
T d1a5za1           2 KIGIVGLGRVGSSTAFALLMK-GFAREMVLIDVD   34 (140)
T ss_dssp             EEEEECCSHHHHHHHHHHHHH-TCCSEEEEECSS
T ss_pred             EEEEECcCHHHHHHHHHHHhC-CCCCEEEEEecc
Confidence            489999999999999999987 64  79999965

>d1mlda1 c.2.1.5 (A:1-144) Malate dehydrogenase {Pig (Sus scrofa) [TaxId: 9823]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Malate dehydrogenase
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=83.02  E-value=0.43  Score=42.61  Aligned_cols=31  Identities=23%  Similarity=0.393  Sum_probs=26.8

Q ss_pred             cEEEECC-cHHHHHHHHHHHhcCCC--cEEEEccC
Q psy14408        435 DIIIVGA-SAAGCVLANRLSEVSSL--KVLLIEAG  466 (720)
Q Consensus       435 DVVIIGS-GiAGLvAA~~LAea~G~--KVLVLEKG  466 (720)
                      -|+|||| |..|.++|+.|+.. |+  .++|+|..
T Consensus         2 Kv~IiGA~G~VG~~~A~~l~~~-~~~~elvLiDi~   35 (144)
T d1mlda1           2 KVAVLGASGGIGQPLSLLLKNS-PLVSRLTLYDIA   35 (144)
T ss_dssp             EEEEETTTSTTHHHHHHHHHTC-TTCSEEEEEESS
T ss_pred             eEEEECCCChHHHHHHHHHHhC-CccceEEEEecc
Confidence            4899995 99999999999998 75  58888875

>d1yqga2 c.2.1.6 (A:1-152) Pyrroline-5-carboxylate reductase ProC {Neisseria meningitidis, serogroup B [TaxId: 487]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Pyrroline-5-carboxylate reductase ProC
species: Neisseria meningitidis, serogroup B [TaxId: 487]

Probab=82.84  E-value=0.51  Score=41.70  Aligned_cols=32  Identities=13%  Similarity=0.385  Sum_probs=28.6

Q ss_pred             cEEEECCcHHHHHHHHHHHhcCCCcEEEEccC
Q psy14408        435 DIIIVGASAAGCVLANRLSEVSSLKVLLIEAG  466 (720)
Q Consensus       435 DVVIIGSGiAGLvAA~~LAea~G~KVLVLEKG  466 (720)
                      .|.|||+|..|.+.|..|.++.+++|.|.+|.
T Consensus         2 kI~fIG~G~MG~ai~~~l~~~~~~~i~v~~r~   33 (152)
T d1yqga2           2 NVYFLGGGNMAAAVAGGLVKQGGYRIYIANRG   33 (152)
T ss_dssp             EEEEECCSHHHHHHHHHHHHHCSCEEEEECSS
T ss_pred             EEEEEcCcHHHHHHHHHHHHCCCCcEEEEeCC
Confidence            47899999999999999998823999999987

>d1e3ia2 c.2.1.1 (A:168-341) Alcohol dehydrogenase {Mouse (Mus musculus), class II [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Mouse (Mus musculus), class II [TaxId: 10090]

Probab=82.46  E-value=0.53  Score=42.93  Aligned_cols=31  Identities=10%  Similarity=0.162  Sum_probs=26.8

Q ss_pred             cEEEECCcHHHHHHHHHHHhcCCC-cEEEEccC
Q psy14408        435 DIIIVGASAAGCVLANRLSEVSSL-KVLLIEAG  466 (720)
Q Consensus       435 DVVIIGSGiAGLvAA~~LAea~G~-KVLVLEKG  466 (720)
                      .|+|+|+|..|+.++..+... |. +|++.|..
T Consensus        31 ~VlV~G~G~iGl~a~~~ak~~-Ga~~Vi~~d~~   62 (174)
T d1e3ia2          31 TCAVFGLGCVGLSAIIGCKIA-GASRIIAIDIN   62 (174)
T ss_dssp             EEEEECCSHHHHHHHHHHHHT-TCSEEEEECSC
T ss_pred             EEEEECCChHHHHHHHHHHHh-CCceeeeeccc
Confidence            699999999999999888887 87 57778875

>d2jhfa2 c.2.1.1 (A:164-339) Alcohol dehydrogenase {Horse (Equus caballus) [TaxId: 9796]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Horse (Equus caballus) [TaxId: 9796]

Probab=82.35  E-value=0.59  Score=41.94  Aligned_cols=32  Identities=6%  Similarity=0.180  Sum_probs=27.3

Q ss_pred             EEEECCcHHHHHHHHHHHhcCCCcEEEEccCC
Q psy14408        436 IIIVGASAAGCVLANRLSEVSSLKVLLIEAGG  467 (720)
Q Consensus       436 VVIIGSGiAGLvAA~~LAea~G~KVLVLEKG~  467 (720)
                      |+|+|+|..|+.+|..++...+.+|++++...
T Consensus        32 VlV~GaGG~G~~~~~~~~~~g~~~Vi~~~~~~   63 (176)
T d2jhfa2          32 CAVFGLGGVGLSVIMGCKAAGAARIIGVDINK   63 (176)
T ss_dssp             EEEECCSHHHHHHHHHHHHTTCSEEEEECSCG
T ss_pred             EEEECCCCcHHHHHHHHHHcCCceEEeecCcH
Confidence            89999999999999999988236899999763

>d1hdoa_ c.2.1.2 (A:) Biliverdin IX beta reductase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Biliverdin IX beta reductase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=82.15  E-value=0.56  Score=42.98  Aligned_cols=31  Identities=16%  Similarity=0.272  Sum_probs=28.8

Q ss_pred             cEEEEC-CcHHHHHHHHHHHhcCCCcEEEEccC
Q psy14408        435 DIIIVG-ASAAGCVLANRLSEVSSLKVLLIEAG  466 (720)
Q Consensus       435 DVVIIG-SGiAGLvAA~~LAea~G~KVLVLEKG  466 (720)
                      -|+|+| +|..|..++.+|.++ |++|+++.|.
T Consensus         5 kIlV~GatG~iG~~v~~~Ll~~-g~~V~~~~R~   36 (205)
T d1hdoa_           5 KIAIFGATGQTGLTTLAQAVQA-GYEVTVLVRD   36 (205)
T ss_dssp             EEEEESTTSHHHHHHHHHHHHT-TCEEEEEESC
T ss_pred             EEEEECCCCHHHHHHHHHHHHC-cCEEEEEEcC
Confidence            499999 599999999999999 9999999886

>d1t2da1 c.2.1.5 (A:1-150) Lactate dehydrogenase {Malaria parasite (Plasmodium falciparum) [TaxId: 5833]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Lactate dehydrogenase
species: Malaria parasite (Plasmodium falciparum) [TaxId: 5833]

Probab=82.01  E-value=0.64  Score=41.78  Aligned_cols=32  Identities=28%  Similarity=0.488  Sum_probs=27.5

Q ss_pred             cEEEECCcHHHHHHHHHHHhcCCC-cEEEEccCC
Q psy14408        435 DIIIVGASAAGCVLANRLSEVSSL-KVLLIEAGG  467 (720)
Q Consensus       435 DVVIIGSGiAGLvAA~~LAea~G~-KVLVLEKG~  467 (720)
                      -|.|||+|-.|.++|+.|++. ++ +++|+|...
T Consensus         5 KI~IIGaG~VG~~~a~~l~~~-~l~el~L~Di~~   37 (150)
T d1t2da1           5 KIVLVGSGMIGGVMATLIVQK-NLGDVVLFDIVK   37 (150)
T ss_dssp             EEEEECCSHHHHHHHHHHHHT-TCCEEEEECSSS
T ss_pred             eEEEECCCHHHHHHHHHHHhC-CCCeEEEEeccC
Confidence            699999999999999988887 64 688999753

>d1uaya_ c.2.1.2 (A:) Type II 3-hydroxyacyl-CoA dehydrogenase {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Type II 3-hydroxyacyl-CoA dehydrogenase
species: Thermus thermophilus [TaxId: 274]

Probab=82.00  E-value=0.59  Score=43.48  Aligned_cols=32  Identities=19%  Similarity=0.345  Sum_probs=26.7

Q ss_pred             EEEECC-cHHHHHHHHHHHhcCCCcEEEEccCCC
Q psy14408        436 IIIVGA-SAAGCVLANRLSEVSSLKVLLIEAGGD  468 (720)
Q Consensus       436 VVIIGS-GiAGLvAA~~LAea~G~KVLVLEKG~~  468 (720)
                      +||-|| +-.|.++|.+|+++ |++|+++++...
T Consensus         4 alITGas~GIG~aiA~~la~~-Ga~V~i~~~~~~   36 (241)
T d1uaya_           4 ALVTGGASGLGRAAALALKAR-GYRVVVLDLRRE   36 (241)
T ss_dssp             EEEETTTSHHHHHHHHHHHHH-TCEEEEEESSCC
T ss_pred             EEEeCCCCHHHHHHHHHHHHC-CCEEEEEECCcc
Confidence            455565 67899999999999 999999998754

>d1nvta1 c.2.1.7 (A:111-287) Shikimate 5-dehydrogenase AroE {Archaeon Methanococcus jannaschii [TaxId: 2190]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Shikimate 5-dehydrogenase AroE
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

Probab=81.86  E-value=0.44  Score=43.34  Aligned_cols=31  Identities=23%  Similarity=0.359  Sum_probs=27.8

Q ss_pred             ccEEEECCcHHHHHHHHHHHhcCCCcEEEEccC
Q psy14408        434 FDIIIVGASAAGCVLANRLSEVSSLKVLLIEAG  466 (720)
Q Consensus       434 yDVVIIGSGiAGLvAA~~LAea~G~KVLVLEKG  466 (720)
                      -.|+|||+|-++-++++.|++. | +|.|+-|.
T Consensus        19 k~vlIlGaGG~arai~~aL~~~-~-~i~I~nR~   49 (177)
T d1nvta1          19 KNIVIYGAGGAARAVAFELAKD-N-NIIIANRT   49 (177)
T ss_dssp             CEEEEECCSHHHHHHHHHHTSS-S-EEEEECSS
T ss_pred             CEEEEECCcHHHHHHHHHHccc-c-ceeeehhh
Confidence            4899999999999999999877 7 89999885

>d2pd4a1 c.2.1.2 (A:2-275) Enoyl-ACP reductase {Helicobacter pylori [TaxId: 210]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Enoyl-ACP reductase
species: Helicobacter pylori [TaxId: 210]

Probab=81.53  E-value=0.5  Score=45.24  Aligned_cols=32  Identities=13%  Similarity=0.092  Sum_probs=27.7

Q ss_pred             cEEEECC-c--HHHHHHHHHHHhcCCCcEEEEccCC
Q psy14408        435 DIIIVGA-S--AAGCVLANRLSEVSSLKVLLIEAGG  467 (720)
Q Consensus       435 DVVIIGS-G--iAGLvAA~~LAea~G~KVLVLEKG~  467 (720)
                      =+||.|| |  -.|.++|..|+++ |.+|++++|..
T Consensus         7 ~alITGaag~~GIG~AiA~~la~~-Ga~V~i~~r~~   41 (274)
T d2pd4a1           7 KGLIVGVANNKSIAYGIAQSCFNQ-GATLAFTYLNE   41 (274)
T ss_dssp             EEEEECCCSTTSHHHHHHHHHHTT-TCEEEEEESST
T ss_pred             EEEEECCCCCcHHHHHHHHHHHHC-CCEEEEEeCCH
Confidence            4788885 4  4899999999999 99999999874

>d1gpja2 c.2.1.7 (A:144-302) Glutamyl tRNA-reductase middle domain {Archaeon Methanopyrus kandleri [TaxId: 2320]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Glutamyl tRNA-reductase middle domain
species: Archaeon Methanopyrus kandleri [TaxId: 2320]

Probab=81.07  E-value=0.66  Score=41.86  Aligned_cols=34  Identities=24%  Similarity=0.361  Sum_probs=29.8

Q ss_pred             CcccEEEECCcHHHHHHHHHHHhcCCC-cEEEEccC
Q psy14408        432 DCFDIIIVGASAAGCVLANRLSEVSSL-KVLLIEAG  466 (720)
Q Consensus       432 ~eyDVVIIGSGiAGLvAA~~LAea~G~-KVLVLEKG  466 (720)
                      .+--|+|||+|-+|..+|.+|.+. |. +|+|.-|.
T Consensus        23 ~~~~ilviGaG~~g~~v~~~L~~~-g~~~i~v~nRt   57 (159)
T d1gpja2          23 HDKTVLVVGAGEMGKTVAKSLVDR-GVRAVLVANRT   57 (159)
T ss_dssp             TTCEEEEESCCHHHHHHHHHHHHH-CCSEEEEECSS
T ss_pred             ccCeEEEECCCHHHHHHHHHHHhc-CCcEEEEEcCc
Confidence            345799999999999999999999 97 58888875

>d1w6ua_ c.2.1.2 (A:) 2,4-dienoyl-CoA reductase, mitochondrial (DECR) {Human (Homo sapiens), [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: 2,4-dienoyl-CoA reductase, mitochondrial (DECR)
species: Human (Homo sapiens), [TaxId: 9606]

Probab=80.77  E-value=0.62  Score=45.24  Aligned_cols=30  Identities=17%  Similarity=0.285  Sum_probs=25.9

Q ss_pred             EEEEC-CcHHHHHHHHHHHhcCCCcEEEEccC
Q psy14408        436 IIIVG-ASAAGCVLANRLSEVSSLKVLLIEAG  466 (720)
Q Consensus       436 VVIIG-SGiAGLvAA~~LAea~G~KVLVLEKG  466 (720)
                      |||.| +|-.|.++|.+|+++ |.+|++++|.
T Consensus        28 alITGas~GIG~aiA~~la~~-Ga~Vii~~r~   58 (294)
T d1w6ua_          28 AFITGGGTGLGKGMTTLLSSL-GAQCVIASRK   58 (294)
T ss_dssp             EEEETTTSHHHHHHHHHHHHT-TCEEEEEESC
T ss_pred             EEEeCCCCHHHHHHHHHHHHc-CCEEEEEECC
Confidence            45555 788899999999999 9999999986

>d2ahra2 c.2.1.6 (A:1-152) Pyrroline-5-carboxylate reductase ProC {Streptococcus pyogenes [TaxId: 1314]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Pyrroline-5-carboxylate reductase ProC
species: Streptococcus pyogenes [TaxId: 1314]

Probab=80.54  E-value=0.6  Score=41.45  Aligned_cols=31  Identities=13%  Similarity=0.296  Sum_probs=28.9

Q ss_pred             cEEEECCcHHHHHHHHHHHhcCCCcEEEEccC
Q psy14408        435 DIIIVGASAAGCVLANRLSEVSSLKVLLIEAG  466 (720)
Q Consensus       435 DVVIIGSGiAGLvAA~~LAea~G~KVLVLEKG  466 (720)
                      .+-|||+|-.|.+.|..|.++ |++|+|.+|.
T Consensus         2 kIg~IG~G~mG~al~~~l~~~-~~~i~v~~r~   32 (152)
T d2ahra2           2 KIGIIGVGKMASAIIKGLKQT-PHELIISGSS   32 (152)
T ss_dssp             EEEEECCSHHHHHHHHHHTTS-SCEEEEECSS
T ss_pred             EEEEEeccHHHHHHHHHHHhC-CCeEEEEcCh
Confidence            378999999999999999999 9999999986

>d1vi2a1 c.2.1.7 (A:107-288) Putative shikimate dehydrogenase YdiB {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Putative shikimate dehydrogenase YdiB
species: Escherichia coli [TaxId: 562]

Probab=80.45  E-value=0.75  Score=41.92  Aligned_cols=33  Identities=15%  Similarity=0.272  Sum_probs=28.9

Q ss_pred             ccEEEECCcHHHHHHHHHHHhcCCC-cEEEEccCC
Q psy14408        434 FDIIIVGASAAGCVLANRLSEVSSL-KVLLIEAGG  467 (720)
Q Consensus       434 yDVVIIGSGiAGLvAA~~LAea~G~-KVLVLEKG~  467 (720)
                      -.|+|||+|-+|-++++.|++. |. ++.|+.|..
T Consensus        19 k~vlIlGaGGaarai~~al~~~-g~~~i~i~nR~~   52 (182)
T d1vi2a1          19 KTMVLLGAGGASTAIGAQGAIE-GLKEIKLFNRRD   52 (182)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHT-TCSEEEEEECSS
T ss_pred             CEEEEECCcHHHHHHHHHHhhc-CCceEeeeccch
Confidence            4899999999999999999998 65 688888863

>d1dhra_ c.2.1.2 (A:) Dihydropteridin reductase (pteridine reductase) {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Dihydropteridin reductase (pteridine reductase)
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=80.41  E-value=0.68  Score=43.75  Aligned_cols=33  Identities=15%  Similarity=0.216  Sum_probs=28.2

Q ss_pred             cEEEECC-cHHHHHHHHHHHhcCCCcEEEEccCCC
Q psy14408        435 DIIIVGA-SAAGCVLANRLSEVSSLKVLLIEAGGD  468 (720)
Q Consensus       435 DVVIIGS-GiAGLvAA~~LAea~G~KVLVLEKG~~  468 (720)
                      -|||.|| |-.|.++|..|+++ |.+|.++++...
T Consensus         4 ~vlITGas~GIG~a~a~~l~~~-G~~V~~~~~~~~   37 (236)
T d1dhra_           4 RVLVYGGRGALGSRCVQAFRAR-NWWVASIDVVEN   37 (236)
T ss_dssp             EEEEETTTSHHHHHHHHHHHTT-TCEEEEEESSCC
T ss_pred             EEEEECCCCHHHHHHHHHHHHC-CCEEEEEeCCcc
Confidence            4788887 56899999999999 999999987643