Psyllid ID: psy1440

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280---
Protein Sequence
NKAVKSYWENYLLAYTAGQGPIKDVYNIGENPQFRLEVGGGVGAVWILLTRHITQLEDFKQNREYITVLVYKNEGKRVYYPYDPPPYLDGVRINSPHYLCKIILNENSSRKYTLVVSQYEKMHTIYYTLRAYATCPFRLEKRPQASWSAGQGPIKDVYNIGENPQFRLEVGGGVGAVWILLTRHITQLEDFKQNREYITVLVYKNEGKRVYYPYDPPPYLDGVRINSPHYLCKIILNENSSRKYTLVVSQYEKMHTIYYTLRAYATCPFRLEKIENPYQFKEE
Secondary Structure (PSIPRED)
cccccEEEEEEEEEEcccccccccccccccccEEEEEEcccccEEEEEEEEcccccccccccccEEEEEEEEccccEEEccccccccccccEEccccEEEEEEEccccccEEEEEEEEEccccEEEEEEEEEEccccEEEEccccccccccccccccccccccccEEEEEEcccccEEEEEEEccccccccccccEEEEEEEEEEccEEEEcccccccccccEEEccccEEEEEEEcccccccEEEEEccccccccccEEEEEEEcccEEEEEccccccEEcc
Secondary Structure Prediction (SSPRO)
ccccccccEEEEEEEcccccccccccccccccEEEEEEcccccEEEEEEEcccccHHHHHccccEEEEEEEEccccEEEEcccccccEccEEEccccEEEEEEcccccccEEEEEEEEccccccEEEEEEEEEccccccEEEEcccEcccccccccccccccccEEEEEEccccccEEEEEEEEcccHHHccccccEEEEEEEEccccEEEEccccccEEccccccccEEEEEEEcccccccEEEEEEEEEcccccEEEEEEEEEcccEEEEEcccccEEEcc
Coil and Loop (DISEMBL)
NKAVKSYWENYLLAYTagqgpikdvynigenpqfrlevggGVGAVWILLTRHITQLEDFKQNREYITVLVYKnegkrvyypydpppyldgvrinspHYLCKIIlnenssrkYTLVVSQYEKMHTIYYTLRAYatcpfrlekrpqaswsagqgpikdvynigenpqfrlevggGVGAVWILLTRHITQLEDFKQNREYITVLVYKnegkrvyypydpppyldgvrinspHYLCKIIlnenssrkYTLVVSQYEKMHTIYYTLRAYatcpfrlekienpyqfkee
Flexible Loop (DISEMBL)
NKAVKSYWENYLLAYTAGQGPIKDVYNIGENPQFRLEVGGGVGAVWILLTRHITqledfkqnreYITVLVyknegkrvyYPYDPPPYLDGVRINSPHYLCKIILNENSSRKYTLVVSQYEKMHTIYYTLRAYATCPFRLEKRPQASWSAGQGPIKDVYNIGENPQFRLEVGGGVGAVWILLTRHITqledfkqnreYITVLVyknegkrvyYPYDPPPYLDGVRINSPHYLCKIILNENSSRKYTLVVSQYEKMHTIYYTLRAYATCPFRLEKIenpyqfkee
Low Complexity Region (SEG)
NKAVKSYWENYLLAYTAGQGPIKDVYNIGENPQFRLEVGGGVGAVWILLTRHITQLEDFKQNREYITVLVYKNEGKRVyypydpppyLDGVRINSPHYLCKIILNENSSRKYTLVVSQYEKMHTIYYTLRAYATCPFRLEKRPQASWSAGQGPIKDVYNIGENPQFRLEVGGGVGAVWILLTRHITQLEDFKQNREYITVLVYKNEGKRVyypydpppyLDGVRINSPHYLCKIILNENSSRKYTLVVSQYEKMHTIYYTLRAYATCPFRLEKIENPYQFKEE
Disordered region (IsUnstruct)
****KSYWENYLLAYTAGQGPIKDVYNIGENPQFRLEVGGGVGAVWILLTRHITQLEDFKQNREYITVLVYKNEGKRVYYPYDPPPYLDGVRINSPHYLCKIILNENSSRKYTLVVSQYEKMHTIYYTLRAYATCPFRLEKRPQASWSAGQGPIKDVYNIGENPQFRLEVGGGVGAVWILLTRHITQLEDFKQNREYITVLVYKNEGKRVYYPYDPPPYLDGVRINSPHYLCKIILNENSSRKYTLVVSQYEKMHTIYYTLRAYATCPFRLEKIE********
Disordered Region (DISOPRED)
NKAVKSYWENYLLAYTAGQGPIKDVYNIGENPQFRLEVGGGVGAVWILLTRHITQLEDFKQNREYITVLVYKNEGKRVYYPYDPPPYLDGVRINSPHYLCKIILNENSSRKYTLVVSQYEKMHTIYYTLRAYATCPFRLEKRPQASWSAGQGPIKDVYNIGENPQFRLEVGGGVGAVWILLTRHITQLEDFKQNREYITVLVYKNEGKR*********YLDGVRINSPHYLCKIILNENSSRKYTLVVSQYEKMHTIYYTLRAYATCPFRLEKIENPY*****
Disordered Region (DISEMBL)
NKAVKSYWENYLLAYTAGQGPIKDVYNIGENPQFRLEVGGGVGAVWILLTRHITQLEDFKQNREYITVLVYKNEGKRVYYPYDPPPYLDGVRINSPHYLCKIILNENSSRKYTLVVSQYEKMHTIYYTLRAYATCPFRLEKRPQASWSAGQGPIKDVYNIGENPQFRLEVGGGVGAVWILLTRHITQLEDFKQNREYITVLVYKNEGKRVYYPYDPPPYLDGVRINSPHYLCKIILNENSSRKYTLVVSQYEKMHTIYYTLRAYATCPFRLEKIENPYQFKEE
Disordered Region (DISPRO)
*KAVKSYWENYLLAYTAGQGPIKDVYNIGENPQFRLEVGGGVGAVWILLTRHITQLEDFKQNREYITVLVYKNEGKRVYYPYDPPPYLDGVRINSPHYLCKIILNENSSRKYTLVVSQYEKMHTIYYTLRAYATCPFRLEKRPQASWSAGQGPIKDVYNIGENPQFRLEVGGGVGAVWILLTRHITQLEDFKQNREYITVLVYKNEGKRVYYPYDPPPYLDGVRINSPHYLCKIILNENSSRKYTLVVSQYEKMHTIYYTLRAYATCPFRLEKIENPYQFK**
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
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TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhooooooooooo
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
NKAVKSYWENYLLAYTAGQGPIKDVYNIGENPQFRLEVGGGVGAVWILLTRHITQLEDFKQNREYITVLVYKNEGKRVYYPYDPPPYLDGVRINSPHYLCKIILNENSSRKYTLVVSQYEKMHTIYYTLRAYATCPFRLEKRPQASWSAGQGPIKDVYNIGENPQFRLEVGGGVGAVWILLTRHITQLEDFKQNREYITVLVYKNEGKRVYYPYDPPPYLDGVRINSPHYLCKIILNENSSRKYTLVVSQYEKMHTIYYTLRAYATCPFRLEKIENPYQFKEE
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	283	2.2.26 [Sep-21-2011]
Q9R1S8	813	Calpain-7 OS=Mus musculus	yes	N/A	0.491	0.170	0.560	7e-44
A0FKG7	813	Calpain-7 OS=Sus scrofa G	yes	N/A	0.494	0.172	0.556	9e-44
Q9Y6W3	813	Calpain-7 OS=Homo sapiens	yes	N/A	0.491	0.170	0.560	9e-44
Q9Y6Z8	854	Calpain-like protease pal	yes	N/A	0.455	0.151	0.313	5e-09
Q00204	847	Calpain-like protease pal	yes	N/A	0.448	0.149	0.306	5e-05

>sp|Q9R1S8|CAN7_MOUSE Calpain-7 OS=Mus musculus GN=Capn7 PE=2 SV=1

 Score =  177 bits (450), Expect = 7e-44,   Method: Compositional matrix adjust.
 Identities = 79/141 (56%), Positives = 104/141 (73%), Gaps = 2/141 (1%)

Query: 144 QASWSAGQGPIKDVYNIGENPQFRLEVGG--GVGAVWILLTRHITQLEDFKQNREYITVL 201
            ++W A QGP+KD Y++  NPQ++LEV    G  AVW+LL+RHIT  +DF  NRE+IT++
Sbjct: 550 HSTWDAKQGPVKDAYSLANNPQYKLEVQCPQGGAAVWVLLSRHITDKDDFANNREFITMV 609

Query: 202 VYKNEGKRVYYPYDPPPYLDGVRINSPHYLCKIILNENSSRKYTLVVSQYEKMHTIYYTL 261
           VYK +GK+VYYP DPPPY+DG+RINSPHYL KI L    +  +TLVVSQYEK +TI+YT+
Sbjct: 610 VYKTDGKKVYYPADPPPYIDGIRINSPHYLTKIKLTTPGTHTFTLVVSQYEKQNTIHYTV 669

Query: 262 RAYATCPFRLEKIENPYQFKE 282
           R Y+ C F   KI +PY   +
Sbjct: 670 RVYSACSFTFSKIPSPYTLSK 690

Calcium-regulated non-lysosomal thiol-protease.
Mus musculus (taxid: 10090)
EC: 3EC: .EC: 4EC: .EC: 2EC: 2EC: .EC: -

>sp|A0FKG7|CAN7_PIG Calpain-7 OS=Sus scrofa GN=CAPN7 PE=2 SV=1

 Score =  177 bits (449), Expect = 9e-44,   Method: Compositional matrix adjust.
 Identities = 79/142 (55%), Positives = 105/142 (73%), Gaps = 2/142 (1%)

Query: 144 QASWSAGQGPIKDVYNIGENPQFRLEVGG--GVGAVWILLTRHITQLEDFKQNREYITVL 201
            ++W A QGP+KD Y++  NPQ++LEV    G  AVW+LL+RHIT  +DF  NRE+IT++
Sbjct: 550 HSTWDAKQGPVKDAYSLANNPQYKLEVQCPQGGAAVWVLLSRHITDKDDFANNREFITMV 609

Query: 202 VYKNEGKRVYYPYDPPPYLDGVRINSPHYLCKIILNENSSRKYTLVVSQYEKMHTIYYTL 261
           VYK +GK+VYYP DPPPY+DG+RINSPHYL KI L    +  +TLVVSQYEK +TI+YT+
Sbjct: 610 VYKTDGKKVYYPADPPPYIDGIRINSPHYLTKIKLTTPGTHTFTLVVSQYEKQNTIHYTV 669

Query: 262 RAYATCPFRLEKIENPYQFKEE 283
           R Y+ C F   KI +PY   ++
Sbjct: 670 RVYSACSFTFSKIPSPYTVSKQ 691

Calcium-regulated non-lysosomal thiol-protease.

Sus scrofa (taxid: 9823)

EC: 3

EC: .

EC: 4

EC: .

EC: 2

EC: 2

EC: .

EC: -

>sp|Q9Y6W3|CAN7_HUMAN Calpain-7 OS=Homo sapiens GN=CAPN7 PE=1 SV=1

 Score =  177 bits (448), Expect = 9e-44,   Method: Compositional matrix adjust.
 Identities = 79/141 (56%), Positives = 104/141 (73%), Gaps = 2/141 (1%)

Query: 144 QASWSAGQGPIKDVYNIGENPQFRLEVGG--GVGAVWILLTRHITQLEDFKQNREYITVL 201
            ++W A QGP+KD Y++  NPQ++LEV    G  AVW+LL+RHIT  +DF  NRE+IT++
Sbjct: 550 HSTWDAKQGPVKDAYSLANNPQYKLEVQCPQGGAAVWVLLSRHITDKDDFANNREFITMV 609

Query: 202 VYKNEGKRVYYPYDPPPYLDGVRINSPHYLCKIILNENSSRKYTLVVSQYEKMHTIYYTL 261
           VYK +GK+VYYP DPPPY+DG+RINSPHYL KI L    +  +TLVVSQYEK +TI+YT+
Sbjct: 610 VYKTDGKKVYYPADPPPYIDGIRINSPHYLTKIKLTTPGTHTFTLVVSQYEKQNTIHYTV 669

Query: 262 RAYATCPFRLEKIENPYQFKE 282
           R Y+ C F   KI +PY   +
Sbjct: 670 RVYSACSFTFSKIPSPYTLSK 690

Calcium-regulated non-lysosomal thiol-protease.

Homo sapiens (taxid: 9606)

EC: 3

EC: .

EC: 4

EC: .

EC: 2

EC: 2

EC: .

EC: -

>sp|Q9Y6Z8|PALB_ASPOR Calpain-like protease palB/RIM13 OS=Aspergillus oryzae (strain ATCC 42149 / RIB 40) GN=palB PE=3 SV=1

 Score = 62.0 bits (149), Expect = 5e-09,   Method: Composition-based stats.
 Identities = 52/166 (31%), Positives = 85/166 (51%), Gaps = 37/166 (22%)

Query: 31  NPQFRLEVGGGVGAVWILLTRHITQ-------LEDFKQNRE--YITVLVYKNEGKRVYYP 81
           NPQF +    G G VW+LL +H          L++++ N E  +I++ V+  +GKRV   
Sbjct: 465 NPQFAVSTENG-GIVWLLLGKHFRTTGQPERPLDEYQANEESAFISIYVFNADGKRVSLS 523

Query: 82  ---YDPPPYLDGVRINSPHYLCKIILNENSSRKYTLVVSQYEKMHTIY--YTLRAYATCP 136
                  PY+D     SP+ L ++ +   ++  YT+VVS+ + + ++   +TL A++TCP
Sbjct: 524 DGALHRGPYVD-----SPNTLMRLEMPPRTT--YTVVVSE-QSLPSLNQNFTLSAFSTCP 575

Query: 137 FRLEK---------RPQASW---SAGQGPIKDVYNIGENPQFRLEV 170
            R+ K         + Q SW   +AG       Y +  NPQFRLE+
Sbjct: 576 VRMAKAQDKYMCVRKIQGSWTPSTAGGNAESSRYPL--NPQFRLEI 619

Required for the proteolytic cleavage of the transcription factor pacC in response to alkaline ambient pH. Probably is the signaling protease that mediates the first proteolytic cleavage within the signaling protease box of pacC.

Aspergillus oryzae (strain ATCC 42149 / RIB 40) (taxid: 510516)

EC: 3

EC: .

EC: 4

EC: .

EC: 2

EC: 2

EC: .

EC: -

>sp|Q00204|PALB_EMENI Calpain-like protease palB OS=Emericella nidulans (strain FGSC A4 / ATCC 38163 / CBS 112.46 / NRRL 194 / M139) GN=palB PE=3 SV=2

 Score = 48.5 bits (114), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 49/160 (30%), Positives = 76/160 (47%), Gaps = 33/160 (20%)

Query: 30  ENPQFRLEVGGGVGAVWILLTRHITQLEDFKQNRE----YITVLVYKNEGKRVYYPYDP- 84
           +NPQF +    G G VW+LL RH+  +E      +    +I++ V+K  GKRV       
Sbjct: 463 KNPQFSVYTERG-GVVWLLLGRHLRTIESRASEEDERFGFISIYVFKG-GKRVALSDGAL 520

Query: 85  --PPYLDGVRINSPHYLCKIILNENSSRKYTLVVSQYEKMHTIY--YTLRAYATCPFRLE 140
              PY+D     SP+ L K+ +   S+  YT VVS+ E +  +   +T+ A++  P R+ 
Sbjct: 521 HRGPYVD-----SPNTLMKLDVPPRST--YTAVVSE-ESLPRVSQNFTISAFSDSPVRIS 572

Query: 141 KRP---------QASW---SAGQGPIKDVYNIGENPQFRL 168
             P         Q SW   +AG       Y++  NPQF +
Sbjct: 573 HAPNKYICVTKVQGSWTPTTAGGNAESARYSL--NPQFSI 610

Required for the proteolytic cleavage of the transcription factor pacC in response to alkaline ambient pH. Probably is the signaling protease that mediates the first proteolytic cleavage within the signaling protease box of pacC, yielding the 53 kDa 'open' conformation intermediate protein, which is committed to further processing. Required for virulence in invasive pulmonary aspergillosis (IPA).

Emericella nidulans (strain FGSC A4 / ATCC 38163 / CBS 112.46 / NRRL 194 / M139) (taxid: 227321)

EC: 3

EC: .

EC: 4

EC: .

EC: 2

EC: 2

EC: .

EC: -

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	283
332025787	826	Calpain-7 [Acromyrmex echinatior]	0.484	0.165	0.702	1e-53
345481834	814	PREDICTED: calpain-7-like isoform 1 [Nas	0.484	0.168	0.731	3e-53
345481832	821	PREDICTED: calpain-7-like isoform 2 [Nas	0.484	0.166	0.731	3e-53
322795542	821	hypothetical protein SINV_09328 [Solenop	0.484	0.166	0.710	6e-53
307176575	826	Calpain-7 [Camponotus floridanus]	0.484	0.165	0.702	8e-53
383855197	1011	PREDICTED: calpain-7-like [Megachile rot	0.484	0.135	0.688	1e-52
307205385	824	Calpain-7 [Harpegnathos saltator]	0.484	0.166	0.702	2e-52
328790403	826	PREDICTED: calpain-7 [Apis mellifera]	0.484	0.165	0.695	4e-52
380019253	826	PREDICTED: LOW QUALITY PROTEIN: calpain-	0.484	0.165	0.695	4e-52
321468817	803	hypothetical protein DAPPUDRAFT_304374 [	0.484	0.170	0.666	9e-52

>gi|332025787|gb|EGI65944.1| Calpain-7 [Acromyrmex echinatior]

 Score =  216 bits (549), Expect = 1e-53,   Method: Compositional matrix adjust.
 Identities = 97/138 (70%), Positives = 117/138 (84%), Gaps = 1/138 (0%)

Query: 147 WSAGQGPIKDVYNIGENPQFRLEV-GGGVGAVWILLTRHITQLEDFKQNREYITVLVYKN 205
           W AG GP++D YNIG+NPQF LE+   G GA+WILLTRHIT + DF+QN+EYITVL+Y+N
Sbjct: 566 WKAGIGPMRDAYNIGDNPQFSLEIQNKGSGAIWILLTRHITDIADFRQNQEYITVLIYRN 625

Query: 206 EGKRVYYPYDPPPYLDGVRINSPHYLCKIILNENSSRKYTLVVSQYEKMHTIYYTLRAYA 265
           +GKRVYYP+DPPPY+DGVRINSPHYLCKI L + S  KYTLV+SQYEK +TIYYTLRAY 
Sbjct: 626 DGKRVYYPHDPPPYIDGVRINSPHYLCKIKLGDQSDTKYTLVISQYEKTNTIYYTLRAYG 685

Query: 266 TCPFRLEKIENPYQFKEE 283
           TCPF L KI  PY++++E
Sbjct: 686 TCPFILRKIPQPYKYEKE 703

Source: Acromyrmex echinatior

Species: Acromyrmex echinatior

Genus: Acromyrmex

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|345481834|ref|XP_001605193.2| PREDICTED: calpain-7-like isoform 1 [Nasonia vitripennis]

 Score =  214 bits (546), Expect = 3e-53,   Method: Compositional matrix adjust.
 Identities = 101/138 (73%), Positives = 114/138 (82%), Gaps = 1/138 (0%)

Query: 147 WSAGQGPIKDVYNIGENPQFRLEVGGGV-GAVWILLTRHITQLEDFKQNREYITVLVYKN 205
           W AG GP+KD YNIG+NPQF LEV   V GAVWILLTRHIT + DF++N+EYITVLVYKN
Sbjct: 551 WKAGSGPVKDSYNIGDNPQFSLEVQPDVTGAVWILLTRHITDIADFRKNQEYITVLVYKN 610

Query: 206 EGKRVYYPYDPPPYLDGVRINSPHYLCKIILNENSSRKYTLVVSQYEKMHTIYYTLRAYA 265
           +GKRVYYP DPPPY+DGVRINSPHYLCKI L  N  R+YTLV+SQYEK  TIYYTLRAY 
Sbjct: 611 DGKRVYYPRDPPPYIDGVRINSPHYLCKIKLGHNPDRRYTLVISQYEKTTTIYYTLRAYG 670

Query: 266 TCPFRLEKIENPYQFKEE 283
           T PF L KI  PY+F++E
Sbjct: 671 TSPFTLRKIAEPYKFEKE 688

Source: Nasonia vitripennis

Species: Nasonia vitripennis

Genus: Nasonia

Family: Pteromalidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|345481832|ref|XP_003424466.1| PREDICTED: calpain-7-like isoform 2 [Nasonia vitripennis]

 Score =  214 bits (545), Expect = 3e-53,   Method: Compositional matrix adjust.
 Identities = 101/138 (73%), Positives = 114/138 (82%), Gaps = 1/138 (0%)

Query: 147 WSAGQGPIKDVYNIGENPQFRLEVGGGV-GAVWILLTRHITQLEDFKQNREYITVLVYKN 205
           W AG GP+KD YNIG+NPQF LEV   V GAVWILLTRHIT + DF++N+EYITVLVYKN
Sbjct: 558 WKAGSGPVKDSYNIGDNPQFSLEVQPDVTGAVWILLTRHITDIADFRKNQEYITVLVYKN 617

Query: 206 EGKRVYYPYDPPPYLDGVRINSPHYLCKIILNENSSRKYTLVVSQYEKMHTIYYTLRAYA 265
           +GKRVYYP DPPPY+DGVRINSPHYLCKI L  N  R+YTLV+SQYEK  TIYYTLRAY 
Sbjct: 618 DGKRVYYPRDPPPYIDGVRINSPHYLCKIKLGHNPDRRYTLVISQYEKTTTIYYTLRAYG 677

Query: 266 TCPFRLEKIENPYQFKEE 283
           T PF L KI  PY+F++E
Sbjct: 678 TSPFTLRKIAEPYKFEKE 695

Source: Nasonia vitripennis

Species: Nasonia vitripennis

Genus: Nasonia

Family: Pteromalidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|322795542|gb|EFZ18238.1| hypothetical protein SINV_09328 [Solenopsis invicta]

 Score =  213 bits (543), Expect = 6e-53,   Method: Compositional matrix adjust.
 Identities = 98/138 (71%), Positives = 116/138 (84%), Gaps = 1/138 (0%)

Query: 147 WSAGQGPIKDVYNIGENPQFRLEV-GGGVGAVWILLTRHITQLEDFKQNREYITVLVYKN 205
           W AG GP++D YNIG+NPQF LEV   G GAVWILLTRHIT + DF+QN+EYITVL+Y+N
Sbjct: 561 WKAGIGPVRDAYNIGDNPQFSLEVQSKGSGAVWILLTRHITDIADFRQNQEYITVLIYRN 620

Query: 206 EGKRVYYPYDPPPYLDGVRINSPHYLCKIILNENSSRKYTLVVSQYEKMHTIYYTLRAYA 265
           +GKRVYYP+DPPPY+DGVRINSPHYLCKI L + S  KYTLV+SQYEK +TIYYTLRAY 
Sbjct: 621 DGKRVYYPHDPPPYIDGVRINSPHYLCKIKLGDQSDAKYTLVISQYEKTNTIYYTLRAYG 680

Query: 266 TCPFRLEKIENPYQFKEE 283
           TCPF L KI   Y++++E
Sbjct: 681 TCPFILRKIPQLYKYEKE 698

Source: Solenopsis invicta

Species: Solenopsis invicta

Genus: Solenopsis

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|307176575|gb|EFN66062.1| Calpain-7 [Camponotus floridanus]

 Score =  213 bits (542), Expect = 8e-53,   Method: Compositional matrix adjust.
 Identities = 97/138 (70%), Positives = 116/138 (84%), Gaps = 1/138 (0%)

Query: 147 WSAGQGPIKDVYNIGENPQFRLEVGG-GVGAVWILLTRHITQLEDFKQNREYITVLVYKN 205
           W AG GP+KD YNIG+NPQF L++   G GA+WILLTRHIT + DF+QN+EYITVL+Y+N
Sbjct: 566 WKAGIGPVKDAYNIGDNPQFLLDIQNRGSGAIWILLTRHITDIADFRQNQEYITVLIYRN 625

Query: 206 EGKRVYYPYDPPPYLDGVRINSPHYLCKIILNENSSRKYTLVVSQYEKMHTIYYTLRAYA 265
           +GKRVYYP+DPPPY+DGV+INSPHYLCKI L E S  KYTLV+SQYEK +TIYYTLRAY 
Sbjct: 626 DGKRVYYPHDPPPYIDGVKINSPHYLCKIKLGEQSDTKYTLVISQYEKTNTIYYTLRAYG 685

Query: 266 TCPFRLEKIENPYQFKEE 283
           TCPF L KI   Y+++EE
Sbjct: 686 TCPFVLRKIPQFYKYEEE 703

Source: Camponotus floridanus

Species: Camponotus floridanus

Genus: Camponotus

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|383855197|ref|XP_003703103.1| PREDICTED: calpain-7-like [Megachile rotundata]

 Score =  213 bits (541), Expect = 1e-52,   Method: Compositional matrix adjust.
 Identities = 95/138 (68%), Positives = 117/138 (84%), Gaps = 1/138 (0%)

Query: 147 WSAGQGPIKDVYNIGENPQFRLEVGGGV-GAVWILLTRHITQLEDFKQNREYITVLVYKN 205
           W+AG GP+KD YNIG+NPQF LEV   V GA+WILLTRHIT + DF+QN+EYIT+LVY+N
Sbjct: 749 WNAGIGPVKDAYNIGDNPQFNLEVQNNVTGAIWILLTRHITDIADFRQNQEYITILVYRN 808

Query: 206 EGKRVYYPYDPPPYLDGVRINSPHYLCKIILNENSSRKYTLVVSQYEKMHTIYYTLRAYA 265
            G+RVYYP+DPPPY+DG+RINSPHYLCKI L+ NS  +YTLV+SQYEK +TIYYTLRAY 
Sbjct: 809 NGRRVYYPHDPPPYIDGLRINSPHYLCKIKLDTNSDSRYTLVISQYEKTNTIYYTLRAYG 868

Query: 266 TCPFRLEKIENPYQFKEE 283
           TCPF L K+   Y++++E
Sbjct: 869 TCPFTLRKMPQLYKYEKE 886

Source: Megachile rotundata

Species: Megachile rotundata

Genus: Megachile

Family: Megachilidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|307205385|gb|EFN83726.1| Calpain-7 [Harpegnathos saltator]

 Score =  212 bits (539), Expect = 2e-52,   Method: Compositional matrix adjust.
 Identities = 97/138 (70%), Positives = 116/138 (84%), Gaps = 1/138 (0%)

Query: 147 WSAGQGPIKDVYNIGENPQFRLEVGGG-VGAVWILLTRHITQLEDFKQNREYITVLVYKN 205
           W AG GP+KD YNIG+NPQF LEV G   GA+W+LLTRHIT + DF+QN+EYITVL+Y+N
Sbjct: 561 WKAGIGPVKDAYNIGDNPQFSLEVEGKRSGAIWVLLTRHITDIADFRQNQEYITVLIYRN 620

Query: 206 EGKRVYYPYDPPPYLDGVRINSPHYLCKIILNENSSRKYTLVVSQYEKMHTIYYTLRAYA 265
            GKRVYYP+DPPPY+DGVRINSPHYLCKI L E+S  KYTLV+SQYEK +TIYYTLRAY 
Sbjct: 621 NGKRVYYPHDPPPYIDGVRINSPHYLCKIKLGEHSDSKYTLVISQYEKTNTIYYTLRAYG 680

Query: 266 TCPFRLEKIENPYQFKEE 283
           TC F L+KI   Y++++E
Sbjct: 681 TCQFSLQKIPQFYEYEQE 698

Source: Harpegnathos saltator

Species: Harpegnathos saltator

Genus: Harpegnathos

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|328790403|ref|XP_001121978.2| PREDICTED: calpain-7 [Apis mellifera]

 Score =  211 bits (536), Expect = 4e-52,   Method: Compositional matrix adjust.
 Identities = 96/138 (69%), Positives = 117/138 (84%), Gaps = 1/138 (0%)

Query: 147 WSAGQGPIKDVYNIGENPQFRLEVGGGV-GAVWILLTRHITQLEDFKQNREYITVLVYKN 205
           W+AG GP+KD YNIG+NPQF LE+   V GA+WILLTRHIT + DF+QN+EYITVLVYKN
Sbjct: 565 WNAGIGPVKDAYNIGDNPQFLLEIKNNVKGAIWILLTRHITDIADFRQNQEYITVLVYKN 624

Query: 206 EGKRVYYPYDPPPYLDGVRINSPHYLCKIILNENSSRKYTLVVSQYEKMHTIYYTLRAYA 265
           +GKRVYYP+DPPPY+DGVRINSPHYLCKI L+     +YTLV+SQYEK +TIYYTLRAY 
Sbjct: 625 DGKRVYYPHDPPPYIDGVRINSPHYLCKIKLDTQVDTRYTLVISQYEKTNTIYYTLRAYG 684

Query: 266 TCPFRLEKIENPYQFKEE 283
           +C F L+KI N Y++++E
Sbjct: 685 SCEFSLKKIPNFYKYEKE 702

Source: Apis mellifera

Species: Apis mellifera

Genus: Apis

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|380019253|ref|XP_003693525.1| PREDICTED: LOW QUALITY PROTEIN: calpain-7-like [Apis florea]

 Score =  211 bits (536), Expect = 4e-52,   Method: Compositional matrix adjust.
 Identities = 96/138 (69%), Positives = 117/138 (84%), Gaps = 1/138 (0%)

Query: 147 WSAGQGPIKDVYNIGENPQFRLEVGGGV-GAVWILLTRHITQLEDFKQNREYITVLVYKN 205
           W+AG GP+KD YNIG+NPQF LE+   V GA+WILLTRHIT + DF+QN+EYITVLVYKN
Sbjct: 565 WNAGIGPVKDAYNIGDNPQFLLEIKNNVKGAIWILLTRHITDIADFRQNQEYITVLVYKN 624

Query: 206 EGKRVYYPYDPPPYLDGVRINSPHYLCKIILNENSSRKYTLVVSQYEKMHTIYYTLRAYA 265
           +GKRVYYP+DPPPY+DGVRINSPHYLCKI L+     +YTLV+SQYEK +TIYYTLRAY 
Sbjct: 625 DGKRVYYPHDPPPYIDGVRINSPHYLCKIKLDTQVDTRYTLVISQYEKXNTIYYTLRAYG 684

Query: 266 TCPFRLEKIENPYQFKEE 283
           +C F L+KI N Y++++E
Sbjct: 685 SCEFSLKKIPNFYKYEKE 702

Source: Apis florea

Species: Apis florea

Genus: Apis

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|321468817|gb|EFX79800.1| hypothetical protein DAPPUDRAFT_304374 [Daphnia pulex]

 Score =  209 bits (533), Expect = 9e-52,   Method: Compositional matrix adjust.
 Identities = 92/138 (66%), Positives = 116/138 (84%), Gaps = 1/138 (0%)

Query: 147 WSAGQGPIKDVYNIGENPQFRLEVGG-GVGAVWILLTRHITQLEDFKQNREYITVLVYKN 205
           W+AG GP+KD+YNIGENPQF L V   G  AVWILLTRHIT ++DF++N+EYITVLVYKN
Sbjct: 542 WNAGSGPVKDLYNIGENPQFSLTVRSPGSAAVWILLTRHITDIDDFRENKEYITVLVYKN 601

Query: 206 EGKRVYYPYDPPPYLDGVRINSPHYLCKIILNENSSRKYTLVVSQYEKMHTIYYTLRAYA 265
           +GKRVYYP DPPPY+DG+RINSPHYLCK++  +    +YTLV+SQYEK +TI Y+LR Y+
Sbjct: 602 KGKRVYYPADPPPYIDGIRINSPHYLCKLLHTQAGIERYTLVISQYEKSNTINYSLRVYS 661

Query: 266 TCPFRLEKIENPYQFKEE 283
           +CP  L+KI NP++FK+E
Sbjct: 662 SCPIELKKITNPHRFKDE 679

Source: Daphnia pulex

Species: Daphnia pulex

Genus: Daphnia

Family: Daphniidae

Order: Diplostraca

Class: Branchiopoda

Phylum: Arthropoda

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	283
ZFIN|ZDB-GENE-111111-1	815	capn7 "calpain 7" [Danio rerio	0.469	0.163	0.547	1.8e-35
RGD|1304855	813	Capn7 "calpain 7" [Rattus norv	0.469	0.163	0.525	4.9e-35
UNIPROTKB|E9PU30	813	Capn7 "Protein Capn7" [Rattus	0.469	0.163	0.525	4.9e-35
UNIPROTKB|E1BIX3	813	CAPN7 "Uncharacterized protein	0.487	0.169	0.507	6.2e-35
UNIPROTKB|E2R0F7	813	CAPN7 "Uncharacterized protein	0.487	0.169	0.507	6.2e-35
UNIPROTKB|A0FKG7	813	CAPN7 "Calpain-7" [Sus scrofa	0.487	0.169	0.507	6.2e-35
UNIPROTKB|I3LBF0	813	CAPN7 "Calpain-7" [Sus scrofa	0.487	0.169	0.507	6.2e-35
UNIPROTKB|Q9Y6W3	813	CAPN7 "Calpain-7" [Homo sapien	0.469	0.163	0.525	8e-35
MGI|MGI:1338030	813	Capn7 "calpain 7" [Mus musculu	0.469	0.163	0.525	8e-35
UNIPROTKB|E1BY84	814	CAPN7 "Uncharacterized protein	0.466	0.162	0.521	1e-34

ZFIN|ZDB-GENE-111111-1 capn7 "calpain 7" [Danio rerio (taxid:7955)]

 Score = 392 (143.0 bits), Expect = 1.8e-35, P = 1.8e-35
 Identities = 75/137 (54%), Positives = 94/137 (68%)

Query:   145 ASWSAGQGPIKDVYNIGENPQFRLEVG---GGVGAVWILLTRHITQLEDFKQNREYITVL 201
             +SW   QGP+KDVY++  NPQ++LEV    GG  AVW+LLTRHIT  +DF QNRE+IT++
Sbjct:   553 SSWDGKQGPVKDVYSLANNPQYKLEVQCPQGGA-AVWVLLTRHITDKDDFAQNREFITLV 611

Query:   202 VYKNEGKRVXXXXXXXXXLDGVRINSPHYLCKIILNENSSRKYTLVVSQYEKMHTIYYTL 261
             VYK  GK+V         +DG+RINSPHYL KI L    +  +TLVVSQYEK +TI YTL
Sbjct:   612 VYKTNGKKVYYPAEPPPYIDGIRINSPHYLTKIKLTSPGTHTFTLVVSQYEKQNTINYTL 671

Query:   262 RAYATCPFRLEKIENPY 278
             R Y+ C F   KI  P+
Sbjct:   672 RVYSVCKFNFSKIPTPF 688

GO:0004198 "calcium-dependent cysteine-type endopeptidase activity" evidence=IEA

GO:0005622 "intracellular" evidence=IEA

GO:0006508 "proteolysis" evidence=IEA

RGD|1304855 Capn7 "calpain 7" [Rattus norvegicus (taxid:10116)]

 Score = 388 (141.6 bits), Expect = 4.9e-35, P = 4.9e-35
 Identities = 72/137 (52%), Positives = 96/137 (70%)

Query:   145 ASWSAGQGPIKDVYNIGENPQFRLEVG---GGVGAVWILLTRHITQLEDFKQNREYITVL 201
             ++W A QGP+KD Y++  NPQ++LEV    GG  AVW+LL+RHIT  +DF  NRE+IT++
Sbjct:   551 STWDAKQGPVKDAYSLANNPQYKLEVQCPQGGA-AVWVLLSRHITDKDDFANNREFITMV 609

Query:   202 VYKNEGKRVXXXXXXXXXLDGVRINSPHYLCKIILNENSSRKYTLVVSQYEKMHTIYYTL 261
             VYK +GK+V         +DG+RINSPHYL KI L    +  +TLVVSQYEK +TI+YT+
Sbjct:   610 VYKTDGKKVYYPADPAPYIDGIRINSPHYLTKIKLTTPGTHTFTLVVSQYEKQNTIHYTV 669

Query:   262 RAYATCPFRLEKIENPY 278
             R Y+ C F   KI +PY
Sbjct:   670 RVYSACSFTFSKIPSPY 686

GO:0090541 "MIT domain binding" evidence=ISO

GO:0097264 "self proteolysis" evidence=ISO

UNIPROTKB|E9PU30 Capn7 "Protein Capn7" [Rattus norvegicus (taxid:10116)]

 Score = 388 (141.6 bits), Expect = 4.9e-35, P = 4.9e-35
 Identities = 72/137 (52%), Positives = 96/137 (70%)

Query:   145 ASWSAGQGPIKDVYNIGENPQFRLEVG---GGVGAVWILLTRHITQLEDFKQNREYITVL 201
             ++W A QGP+KD Y++  NPQ++LEV    GG  AVW+LL+RHIT  +DF  NRE+IT++
Sbjct:   551 STWDAKQGPVKDAYSLANNPQYKLEVQCPQGGA-AVWVLLSRHITDKDDFANNREFITMV 609

Query:   202 VYKNEGKRVXXXXXXXXXLDGVRINSPHYLCKIILNENSSRKYTLVVSQYEKMHTIYYTL 261
             VYK +GK+V         +DG+RINSPHYL KI L    +  +TLVVSQYEK +TI+YT+
Sbjct:   610 VYKTDGKKVYYPADPAPYIDGIRINSPHYLTKIKLTTPGTHTFTLVVSQYEKQNTIHYTV 669

Query:   262 RAYATCPFRLEKIENPY 278
             R Y+ C F   KI +PY
Sbjct:   670 RVYSACSFTFSKIPSPY 686

GO:0004198 "calcium-dependent cysteine-type endopeptidase activity" evidence=IEA

GO:0005622 "intracellular" evidence=IEA

GO:0006508 "proteolysis" evidence=IEA

UNIPROTKB|E1BIX3 CAPN7 "Uncharacterized protein" [Bos taurus (taxid:9913)]

 Score = 387 (141.3 bits), Expect = 6.2e-35, P = 6.2e-35
 Identities = 72/142 (50%), Positives = 98/142 (69%)

Query:   145 ASWSAGQGPIKDVYNIGENPQFRLEVG---GGVGAVWILLTRHITQLEDFKQNREYITVL 201
             ++W A QGP+KD Y++  NPQ++LEV    GG  AVW+LL+RHIT  +DF  NRE+IT++
Sbjct:   551 STWDAKQGPVKDAYSLANNPQYKLEVQCPQGGA-AVWVLLSRHITDKDDFANNREFITMV 609

Query:   202 VYKNEGKRVXXXXXXXXXLDGVRINSPHYLCKIILNENSSRKYTLVVSQYEKMHTIYYTL 261
             VYK +GK+V         +DG+RINSPHYL KI L    +  +TLVVSQYEK +TI+YT+
Sbjct:   610 VYKTDGKKVYYPADPPPYIDGIRINSPHYLTKIKLTTPGTHTFTLVVSQYEKQNTIHYTV 669

Query:   262 RAYATCPFRLEKIENPYQFKEE 283
             R Y+ C F   KI +PY   ++
Sbjct:   670 RVYSACSFTFSKIPSPYTVSKQ 691

GO:0006508 "proteolysis" evidence=IEA

GO:0005622 "intracellular" evidence=IEA

GO:0004198 "calcium-dependent cysteine-type endopeptidase activity" evidence=IEA

UNIPROTKB|E2R0F7 CAPN7 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 387 (141.3 bits), Expect = 6.2e-35, P = 6.2e-35
 Identities = 72/142 (50%), Positives = 98/142 (69%)

Query:   145 ASWSAGQGPIKDVYNIGENPQFRLEVG---GGVGAVWILLTRHITQLEDFKQNREYITVL 201
             ++W A QGP+KD Y++  NPQ++LEV    GG  AVW+LL+RHIT  +DF  NRE+IT++
Sbjct:   551 STWDAKQGPVKDAYSLANNPQYKLEVQCPQGGA-AVWVLLSRHITDKDDFANNREFITMV 609

Query:   202 VYKNEGKRVXXXXXXXXXLDGVRINSPHYLCKIILNENSSRKYTLVVSQYEKMHTIYYTL 261
             VYK +GK+V         +DG+RINSPHYL KI L    +  +TLVVSQYEK +TI+YT+
Sbjct:   610 VYKTDGKKVYYPGDPPPYIDGIRINSPHYLTKIKLTTPGTHTFTLVVSQYEKQNTIHYTV 669

Query:   262 RAYATCPFRLEKIENPYQFKEE 283
             R Y+ C F   KI +PY   ++
Sbjct:   670 RVYSACSFTFSKIPSPYTLSKQ 691

GO:0006508 "proteolysis" evidence=IEA

GO:0005622 "intracellular" evidence=IEA

GO:0004198 "calcium-dependent cysteine-type endopeptidase activity" evidence=IEA

UNIPROTKB|A0FKG7 CAPN7 "Calpain-7" [Sus scrofa (taxid:9823)]

 Score = 387 (141.3 bits), Expect = 6.2e-35, P = 6.2e-35
 Identities = 72/142 (50%), Positives = 98/142 (69%)

Query:   145 ASWSAGQGPIKDVYNIGENPQFRLEVG---GGVGAVWILLTRHITQLEDFKQNREYITVL 201
             ++W A QGP+KD Y++  NPQ++LEV    GG  AVW+LL+RHIT  +DF  NRE+IT++
Sbjct:   551 STWDAKQGPVKDAYSLANNPQYKLEVQCPQGGA-AVWVLLSRHITDKDDFANNREFITMV 609

Query:   202 VYKNEGKRVXXXXXXXXXLDGVRINSPHYLCKIILNENSSRKYTLVVSQYEKMHTIYYTL 261
             VYK +GK+V         +DG+RINSPHYL KI L    +  +TLVVSQYEK +TI+YT+
Sbjct:   610 VYKTDGKKVYYPADPPPYIDGIRINSPHYLTKIKLTTPGTHTFTLVVSQYEKQNTIHYTV 669

Query:   262 RAYATCPFRLEKIENPYQFKEE 283
             R Y+ C F   KI +PY   ++
Sbjct:   670 RVYSACSFTFSKIPSPYTVSKQ 691

GO:0005634 "nucleus" evidence=IEA

GO:0006508 "proteolysis" evidence=IEA

GO:0004198 "calcium-dependent cysteine-type endopeptidase activity" evidence=IEA

UNIPROTKB|I3LBF0 CAPN7 "Calpain-7" [Sus scrofa (taxid:9823)]

 Score = 387 (141.3 bits), Expect = 6.2e-35, P = 6.2e-35
 Identities = 72/142 (50%), Positives = 98/142 (69%)

Query:   145 ASWSAGQGPIKDVYNIGENPQFRLEVG---GGVGAVWILLTRHITQLEDFKQNREYITVL 201
             ++W A QGP+KD Y++  NPQ++LEV    GG  AVW+LL+RHIT  +DF  NRE+IT++
Sbjct:   551 STWDAKQGPVKDAYSLANNPQYKLEVQCPQGGA-AVWVLLSRHITDKDDFANNREFITMV 609

Query:   202 VYKNEGKRVXXXXXXXXXLDGVRINSPHYLCKIILNENSSRKYTLVVSQYEKMHTIYYTL 261
             VYK +GK+V         +DG+RINSPHYL KI L    +  +TLVVSQYEK +TI+YT+
Sbjct:   610 VYKTDGKKVYYPADPPPYIDGIRINSPHYLTKIKLTTPGTHTFTLVVSQYEKQNTIHYTV 669

Query:   262 RAYATCPFRLEKIENPYQFKEE 283
             R Y+ C F   KI +PY   ++
Sbjct:   670 RVYSACSFTFSKIPSPYTVSKQ 691

GO:0006508 "proteolysis" evidence=IEA

GO:0005622 "intracellular" evidence=IEA

GO:0004198 "calcium-dependent cysteine-type endopeptidase activity" evidence=IEA

UNIPROTKB|Q9Y6W3 CAPN7 "Calpain-7" [Homo sapiens (taxid:9606)]

 Score = 386 (140.9 bits), Expect = 8.0e-35, P = 8.0e-35
 Identities = 72/137 (52%), Positives = 96/137 (70%)

Query:   145 ASWSAGQGPIKDVYNIGENPQFRLEVG---GGVGAVWILLTRHITQLEDFKQNREYITVL 201
             ++W A QGP+KD Y++  NPQ++LEV    GG  AVW+LL+RHIT  +DF  NRE+IT++
Sbjct:   551 STWDAKQGPVKDAYSLANNPQYKLEVQCPQGGA-AVWVLLSRHITDKDDFANNREFITMV 609

Query:   202 VYKNEGKRVXXXXXXXXXLDGVRINSPHYLCKIILNENSSRKYTLVVSQYEKMHTIYYTL 261
             VYK +GK+V         +DG+RINSPHYL KI L    +  +TLVVSQYEK +TI+YT+
Sbjct:   610 VYKTDGKKVYYPADPPPYIDGIRINSPHYLTKIKLTTPGTHTFTLVVSQYEKQNTIHYTV 669

Query:   262 RAYATCPFRLEKIENPY 278
             R Y+ C F   KI +PY
Sbjct:   670 RVYSACSFTFSKIPSPY 686

GO:0004198 "calcium-dependent cysteine-type endopeptidase activity" evidence=IEA

GO:0005634 "nucleus" evidence=IEA

GO:0090541 "MIT domain binding" evidence=IPI

GO:0097264 "self proteolysis" evidence=IDA

MGI|MGI:1338030 Capn7 "calpain 7" [Mus musculus (taxid:10090)]

 Score = 386 (140.9 bits), Expect = 8.0e-35, P = 8.0e-35
 Identities = 72/137 (52%), Positives = 96/137 (70%)

Query:   145 ASWSAGQGPIKDVYNIGENPQFRLEVG---GGVGAVWILLTRHITQLEDFKQNREYITVL 201
             ++W A QGP+KD Y++  NPQ++LEV    GG  AVW+LL+RHIT  +DF  NRE+IT++
Sbjct:   551 STWDAKQGPVKDAYSLANNPQYKLEVQCPQGGA-AVWVLLSRHITDKDDFANNREFITMV 609

Query:   202 VYKNEGKRVXXXXXXXXXLDGVRINSPHYLCKIILNENSSRKYTLVVSQYEKMHTIYYTL 261
             VYK +GK+V         +DG+RINSPHYL KI L    +  +TLVVSQYEK +TI+YT+
Sbjct:   610 VYKTDGKKVYYPADPPPYIDGIRINSPHYLTKIKLTTPGTHTFTLVVSQYEKQNTIHYTV 669

Query:   262 RAYATCPFRLEKIENPY 278
             R Y+ C F   KI +PY
Sbjct:   670 RVYSACSFTFSKIPSPY 686

GO:0004198 "calcium-dependent cysteine-type endopeptidase activity" evidence=IEA

GO:0005622 "intracellular" evidence=IEA

GO:0005634 "nucleus" evidence=IEA

GO:0006508 "proteolysis" evidence=IEA

GO:0008233 "peptidase activity" evidence=IEA

GO:0008234 "cysteine-type peptidase activity" evidence=IEA

GO:0016787 "hydrolase activity" evidence=IEA

GO:0090541 "MIT domain binding" evidence=ISO

GO:0097264 "self proteolysis" evidence=ISO

UNIPROTKB|E1BY84 CAPN7 "Uncharacterized protein" [Gallus gallus (taxid:9031)]

 Score = 385 (140.6 bits), Expect = 1.0e-34, P = 1.0e-34
 Identities = 72/138 (52%), Positives = 95/138 (68%)

Query:   145 ASWSAGQGPIKDVYNIGENPQFRLEV----GGGVGAVWILLTRHITQLEDFKQNREYITV 200
             ++W A QGP+KD Y++  NPQ++LEV    GG V  VW+LL+RHIT  +DF  NRE+IT+
Sbjct:   552 STWDAKQGPVKDAYSLANNPQYKLEVQCPQGGAV--VWVLLSRHITDKDDFAHNREFITM 609

Query:   201 LVYKNEGKRVXXXXXXXXXLDGVRINSPHYLCKIILNENSSRKYTLVVSQYEKMHTIYYT 260
             +VYK +GK+V         +DG+RINSPHYL KI L    +  +TLVVSQYEK +TI+YT
Sbjct:   610 VVYKTDGKKVYYPADPVPYIDGIRINSPHYLTKIKLTSPGTHTFTLVVSQYEKQNTIHYT 669

Query:   261 LRAYATCPFRLEKIENPY 278
             +R Y+ C F   KI  PY
Sbjct:   670 IRVYSLCKFTFSKIPTPY 687

GO:0004198 "calcium-dependent cysteine-type endopeptidase activity" evidence=IEA

GO:0005622 "intracellular" evidence=IEA

GO:0006508 "proteolysis" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q9R1S8	CAN7_MOUSE	3, ., 4, ., 2, 2, ., -	0.5602	0.4911	0.1709	yes	N/A
A0FKG7	CAN7_PIG	3, ., 4, ., 2, 2, ., -	0.5563	0.4946	0.1722	yes	N/A
Q9Y6W3	CAN7_HUMAN	3, ., 4, ., 2, 2, ., -	0.5602	0.4911	0.1709	yes	N/A

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database

No hit with e-value below 0.005

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	283
cd00214	150	Calpain_III Calpain, subdomain III. Calpains are c	99.95
smart00720	143	calpain_III calpain_III.	99.93
PF01067	147	Calpain_III: Calpain large subunit, domain III; In	99.9
smart00720	143	calpain_III calpain_III.	99.6
PF01067	147	Calpain_III: Calpain large subunit, domain III; In	99.55
cd00214	150	Calpain_III Calpain, subdomain III. Calpains are c	99.53
KOG0045|consensus	612		99.47
KOG0045|consensus	612		98.81

>cd00214 Calpain_III Calpain, subdomain III

Probab=99.95  E-value=6.4e-27  Score=191.68  Aligned_cols=130  Identities=22%  Similarity=0.305  Sum_probs=101.1

Q ss_pred             ccceeeeCC-C-CCC-CCCCCCCCCCeEEEEEcCCC-----ceEEEeeeccccc-cccccCCceEEEEEEEEeCCc-e--
Q psy1440         142 RPQASWSAG-Q-GPI-KDVYNIGENPQFRLEVGGGV-----GAVWILLTRHITQ-LEDFKQNREYITVLVYKNEGK-R--  209 (283)
Q Consensus       142 ~~~G~W~~~-~-Gg~-~~~~tf~~NPQy~l~v~~~~-----~~v~i~L~~~~~~-~~~~~i~~~~i~~~v~~~~g~-r--  209 (283)
                      +++|+|+++ + ||+ ++..||++||||.|++.+.+     |+|+|.|+|..+. .+....+...|||+||++++. +  
T Consensus         7 ~~~G~W~~g~tAGGc~~~~~tf~~NPQf~l~v~~~~~~~~~~~v~i~L~q~~~r~~~~~~~~~~~IGf~v~~~~~~~~~~   86 (150)
T cd00214           7 SFNGEWRRGQTAGGCRNNPDTFWTNPQFRIRVPEPDDDEGKCTVLIALMQKNRRHLRKKGLDLLTIGFHVYKVPGENRHL   86 (150)
T ss_pred             EEeCeEeCCcccCCCCCcccccccCceEEEEecCCCCCCCccEEEEEeccCCcchhcccCCCcceEEEEEEEeCCcCccc
Confidence            569999994 4 555 88889999999999999633     8899999884432 222233455688999998652 2  


Q ss_pred             --eecCCCCCCcccCccccCcceEEEEEEecCCCccEEEEeeccCCCCcccEEEEEEeCCCceeeec
Q psy1440         210 --VYYPYDPPPYLDGVRINSPHYLCKIILNENSSRKYTLVVSQYEKMHTIYYTLRAYATCPFRLEKI  274 (283)
Q Consensus       210 --v~~~~~~~~~~sg~y~~~~~~~~~~~l~~l~~G~Y~vVpST~~p~~~g~F~L~v~s~~~~~l~~i  274 (283)
                        .++.....++.++.|.+.+++.+++.|   +||.|+||||||+|+++|+|.|||||+.++.++++
T Consensus        87 ~~~~~~~~~~~~~s~~~~~~rev~~~~~L---~pG~YvIIPsT~~p~~~g~F~LrVfs~~~~~~~~~  150 (150)
T cd00214          87 RRDFFLHKAPRARSSTFINTREVSLRFRL---PPGEYVIVPSTFEPGEEGEFLLRVFSEKSIKSSEL  150 (150)
T ss_pred             ChhhhhccCcccccCccccccEEEEEEEc---CCCCEEEEeeecCCCCcccEEEEEEecCCCccccC
Confidence              123334445778889999998887765   99999999999999999999999999999988754

Calpains are calcium-activated cytoplasmic cysteine proteinases, participate in cytoskeletal remodeling processes, cell differentiation, apoptosis and signal transduction. Catalytic domain and the two calmodulin-like domains are separated by C2-like domain III. Domain III plays an important role in calcium-induced activation of calpain involving electrostatic interactions with subdomain II. Proposed to mediate calpain's interaction with phospholipids and translocation to cytoplasmic/nuclear membranes. CD includes subdomain III of typical and atypical calpains.

>smart00720 calpain_III calpain_III

Probab=99.93  E-value=1.5e-25  Score=182.23  Aligned_cols=128  Identities=24%  Similarity=0.337  Sum_probs=98.6

Q ss_pred             ccceeeeC-CC-CCCCCC-CCCCCCCeEEEEEcCCC---ceEEEeeecccccc-ccccCCceEEEEEEEEeCCc----ee
Q psy1440         142 RPQASWSA-GQ-GPIKDV-YNIGENPQFRLEVGGGV---GAVWILLTRHITQL-EDFKQNREYITVLVYKNEGK----RV  210 (283)
Q Consensus       142 ~~~G~W~~-~~-Gg~~~~-~tf~~NPQy~l~v~~~~---~~v~i~L~~~~~~~-~~~~i~~~~i~~~v~~~~g~----rv  210 (283)
                      +++|+|++ .+ ||+.+. .||++||||.|++.+.+   |+|+|.|+|+.+.. ++.......||++||++++.    +.
T Consensus         5 ~~~G~W~~~~tAGG~~~~~~tf~~NPqy~l~v~~~~~~~~~v~i~L~q~~~r~~~~~~~~~~~iGf~v~~~~~~~~~~~~   84 (143)
T smart00720        5 SVQGSWTRGQTAGGCRNYPATFWTNPQFRITLEEPDDDDCTVLIALMQKNRRRLRRKGADFLTIGFAVYKVPKELHLRRD   84 (143)
T ss_pred             EEeCeEECCCccCCccccccccccCCeEEEEecCCCCCceEEEEEecccCcccccccCCccceEeEEEEEeccccccchh
Confidence            56999995 45 665554 89999999999999532   46999998854332 22223556688999998653    34


Q ss_pred             ecCCCCCCcccCccccCcceEEEEEEecCCCccEEEEeeccCCCCcccEEEEEEeCCCceee
Q psy1440         211 YYPYDPPPYLDGVRINSPHYLCKIILNENSSRKYTLVVSQYEKMHTIYYTLRAYATCPFRLE  272 (283)
Q Consensus       211 ~~~~~~~~~~sg~y~~~~~~~~~~~l~~l~~G~Y~vVpST~~p~~~g~F~L~v~s~~~~~l~  272 (283)
                      ++.....++.++.|.+.+++.+++.|   +||.|+||||||+|+++|+|.||||++.+++++
T Consensus        85 ~~~~~~~~~~s~~y~~~r~v~~~~~L---~~G~Y~iVPsT~~p~~~g~F~LrV~s~~~~~l~  143 (143)
T smart00720       85 FFLSNAPRASSGDYINGREVSERFRL---PPGEYVIVPSTFEPNQEGDFLLRVFSEGPFKLT  143 (143)
T ss_pred             hhhccCccccccccccCeEEEEEEEc---CCCCEEEEEeecCCCCccCEEEEEEecCccccC
Confidence            44445556788999999997777755   999999999999999999999999999998763

>PF01067 Calpain_III: Calpain large subunit, domain III; InterPro: IPR022682 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families

Probab=99.90  E-value=1.4e-23  Score=170.97  Aligned_cols=128  Identities=26%  Similarity=0.370  Sum_probs=87.0

Q ss_pred             ccceeee-CCC-CCCCCCC-CCCCCCeEEEEEcCCC-----ceEEEeeecccccc-ccccCCceEEEEEEEEeC--C---
Q psy1440         142 RPQASWS-AGQ-GPIKDVY-NIGENPQFRLEVGGGV-----GAVWILLTRHITQL-EDFKQNREYITVLVYKNE--G---  207 (283)
Q Consensus       142 ~~~G~W~-~~~-Gg~~~~~-tf~~NPQy~l~v~~~~-----~~v~i~L~~~~~~~-~~~~i~~~~i~~~v~~~~--g---  207 (283)
                      +++|+|. ..+ ||+.+.. +|++||||.|++.+..     ++|.|.|+|+.++. ++.......|+++||+..  .   
T Consensus         6 ~~~G~W~~~~taGG~~~~~~s~~~NPQy~l~v~~~~~~~~~~~v~i~L~q~~~~~~~~~~~~~~~Ig~~v~~~~~~~~~~   85 (147)
T PF01067_consen    6 TIEGEWVTGNTAGGCPNNPYSWWNNPQYRLTVSEPTEESNKCTVVISLMQKDRRRKRDVGEKDLPIGFYVFKVQSQQKRL   85 (147)
T ss_dssp             EEEEEE-TTTS---STT-TTTGGGS-EEEEEESSGCCCSSBEEEEEEEEECSGCCGCSTTTTTSEEEEEEEEETTTTSE-
T ss_pred             EEeCEEeCCCcCCCCcccccccccCcEEEEEEcCCCCCcceeEEEEEEEecCcchhhcccccceEEeEEEEeeecccccC
Confidence            5799994 445 6666555 9999999999999522     25999998744322 211223456888999872  1   


Q ss_pred             ceeecCCCCCCcccCccccCcceEEEEEEecCCCccEEEEeeccCCCCcccEEEEEEeCCCceee
Q psy1440         208 KRVYYPYDPPPYLDGVRINSPHYLCKIILNENSSRKYTLVVSQYEKMHTIYYTLRAYATCPFRLE  272 (283)
Q Consensus       208 ~rv~~~~~~~~~~sg~y~~~~~~~~~~~l~~l~~G~Y~vVpST~~p~~~g~F~L~v~s~~~~~l~  272 (283)
                      .+.+......++.++.|.+.+++.+.+.|   +||+|+||||||+|+++|+|.|+|||+.+++|.
T Consensus        86 ~~~~~~~~~~~~~~~~~~~~~~v~~~~~L---~~G~YvIVPsT~~~~~~g~F~L~v~s~~~~~l~  147 (147)
T PF01067_consen   86 PRQYFLFNKPVVSSGDYSNSREVSEEFTL---PPGTYVIVPSTYEPGQEGEFTLRVFSDSPFELQ  147 (147)
T ss_dssp             -HHHHHTS-SSEE-SSEBSSSEEEEEEEE----SEEEEEEEEESSTT--EEEEEEEEESSSEEE-
T ss_pred             CcceeccccceeeccccccceEEEEEEEc---CCCCEEEEEecCCCCCeeeEEEEEEECCCcccC
Confidence            12223334556788999999987777665   999999999999999999999999999999873

Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Cysteine peptidases have characteristic molecular topologies, which can be seen not only in their three-dimensional structures, but commonly also in the two-dimensional structures. These are peptidases in which the nucleophile is the sulphydryl group of a cysteine residue. Cysteine proteases are divided into clans (proteins which are evolutionary related), and further sub-divided into families, on the basis of the architecture of their catalytic dyad or triad []. This group of cysteine peptidases belong to the MEROPS peptidase family C2 (calpain family, clan CA). A type example is calpain, which is an intracellular protease involved in many important cellular functions that are regulated by calcium []. The protein is a complex of 2 polypeptide chains (light and heavy), with three known forms in mammals [, ]: a highly calcium-sensitive (i.e., micro-molar range) form known as mu-calpain, mu-CANP or calpain I; a form sensitive to calcium in the milli-molar range, known as m-calpain, m-CANP or calpain II; and a third form, known as p94, which is found in skeletal muscle only []. All forms have identical light but different heavy chains. Both mu- and m-calpain are heterodimers containing an identical 28kDa subunit and an 80kDa subunit that shares 55-65% sequence homology between the two proteases [, ]. The crystallographic structure of m-calpain reveals six "domains" in the 80kDa subunit: A 19-amino acid NH2-terminal sequence; Active site domain IIa; Active site domain IIb. Domain 2 shows low levels of sequence similarity to papain; although the catalytic His has not been located by biochemical means, it is likely that calpain and papain are related []. Domain III; An 18-amino acid extended sequence linking domain III to domain IV; Domain IV, which resembles the penta EF-hand family of polypeptides, binds calcium and regulates activity []. />]. Ca2+-binding causes a rearrangement of the protein backbone, the net effect of which is that a Trp side chain, which acts as a wedge between catalytic domains IIa and IIb in the apo state, moves away from the active site cleft allowing for the proper formation of the catalytic triad []. Calpain-like mRNAs have been identified in other organisms including bacteria, but the molecules encoded by these mRNAs have not been isolated, so little is known about their properties. How calpain activity is regulated in these organisms cells is still unclear In metazoans, the activity of calpain is controlled by a single proteinase inhibitor, calpastatin (IPR001259 from INTERPRO). The calpastatin gene can produce eight or more calpastatin polypeptides ranging from 17 to 85 kDa by use of different promoters and alternative splicing events. The physiological significance of these different calpastatins is unclear, although all bind to three different places on the calpain molecule; binding to at least two of the sites is Ca2+ dependent. The calpains ostensibly participate in a variety of cellular processes including remodelling of cytoskeletal/membrane attachments, different signal transduction pathways, and apoptosis. Deregulated calpain activity following loss of Ca2+ homeostasis results in tissue damage in response to events such as myocardial infarcts, stroke, and brain trauma []. This entry represents domain III. It is found in association with PF00648 from PFAM. The function of the domain III and I are currently unknown. Domain II is a cysteine protease and domain IV is a calcium binding domain. Calpains are believed to participate in intracellular signaling pathways mediated by calcium ions. ; PDB: 1QXP_B 2QFE_A 1DF0_A 1U5I_A 3DF0_A 3BOW_A 1KFU_L 1KFX_L.

>smart00720 calpain_III calpain_III

Probab=99.60  E-value=1.2e-14  Score=118.03  Aligned_cols=127  Identities=24%  Similarity=0.303  Sum_probs=97.9

Q ss_pred             cceecccCC--CCCCcCC-CCCCCCCcEEEEEcCCC---ceEEEEEEecccccc-cccCCCCeEEEEEEeeCCe----EE
Q psy1440          10 NYLLAYTAG--QGPIKDV-YNIGENPQFRLEVGGGV---GAVWILLTRHITQLE-DFKQNREYITVLVYKNEGK----RV   78 (283)
Q Consensus        10 ~ly~nW~p~--~~~~~d~-~~~~~NPQy~l~~~~~~---~~vwvlL~rH~~~~~-d~~~~~~~i~l~v~~~~g~----rv   78 (283)
                      .+...|.++  .|++.+. .+|..||||.|+++...   .+|+|.|.++..... +.......|+++||+.++.    +.
T Consensus         5 ~~~G~W~~~~tAGG~~~~~~tf~~NPqy~l~v~~~~~~~~~v~i~L~q~~~r~~~~~~~~~~~iGf~v~~~~~~~~~~~~   84 (143)
T smart00720        5 SVQGSWTRGQTAGGCRNYPATFWTNPQFRITLEEPDDDDCTVLIALMQKNRRRLRRKGADFLTIGFAVYKVPKELHLRRD   84 (143)
T ss_pred             EEeCeEECCCccCCccccccccccCCeEEEEecCCCCCceEEEEEecccCcccccccCCccceEeEEEEEeccccccchh
Confidence            456789854  3777777 89999999999998642   269999998765432 2223456799999998654    23


Q ss_pred             EccCCCCCCcccceeCCceEEEEEEecCCCCccEEEEEeccccccccccEEEEEeCcceEE
Q psy1440          79 YYPYDPPPYLDGVRINSPHYLCKIILNENSSRKYTLVVSQYEKMHTIYYTLRAYATCPFRL  139 (283)
Q Consensus        79 ~~~~~~~~~~~g~~~ns~~~l~~~~~~p~~~~~ytlV~s~~e~~~~~~ftL~~~s~~~~~l  139 (283)
                      .+.........|.|.|++++.+++.++||   .|++|+++|++..+..|.|++|+..++++
T Consensus        85 ~~~~~~~~~~s~~y~~~r~v~~~~~L~~G---~Y~iVPsT~~p~~~g~F~LrV~s~~~~~l  142 (143)
T smart00720       85 FFLSNAPRASSGDYINGREVSERFRLPPG---EYVIVPSTFEPNQEGDFLLRVFSEGPFKL  142 (143)
T ss_pred             hhhccCccccccccccCeEEEEEEEcCCC---CEEEEEeecCCCCccCEEEEEEecCcccc
Confidence            33333333456789999999999999996   69999999999999999999999998765

>PF01067 Calpain_III: Calpain large subunit, domain III; InterPro: IPR022682 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families

Probab=99.55  E-value=3.2e-14  Score=115.65  Aligned_cols=128  Identities=26%  Similarity=0.355  Sum_probs=89.1

Q ss_pred             cceecccCCC--CCCcCCC-CCCCCCcEEEEEcCCCc-----eEEEEEEeccccccc-ccCCCCeEEEEEEeeC--CeEE
Q psy1440          10 NYLLAYTAGQ--GPIKDVY-NIGENPQFRLEVGGGVG-----AVWILLTRHITQLED-FKQNREYITVLVYKNE--GKRV   78 (283)
Q Consensus        10 ~ly~nW~p~~--~~~~d~~-~~~~NPQy~l~~~~~~~-----~vwvlL~rH~~~~~d-~~~~~~~i~l~v~~~~--g~rv   78 (283)
                      .+...|..+.  |+..+.. +|.+||||.|++.....     .|+|.|.++...... .+.....|+++||+.+  .++.
T Consensus         6 ~~~G~W~~~~taGG~~~~~~s~~~NPQy~l~v~~~~~~~~~~~v~i~L~q~~~~~~~~~~~~~~~Ig~~v~~~~~~~~~~   85 (147)
T PF01067_consen    6 TIEGEWVTGNTAGGCPNNPYSWWNNPQYRLTVSEPTEESNKCTVVISLMQKDRRRKRDVGEKDLPIGFYVFKVQSQQKRL   85 (147)
T ss_dssp             EEEEEE-TTTS---STT-TTTGGGS-EEEEEESSGCCCSSBEEEEEEEEECSGCCGCSTTTTTSEEEEEEEEETTTTSE-
T ss_pred             EEeCEEeCCCcCCCCcccccccccCcEEEEEEcCCCCCcceeEEEEEEEecCcchhhcccccceEEeEEEEeeecccccC
Confidence            4677895443  5556554 99999999999987422     599999987655432 1234568999999982  2222


Q ss_pred             ---EccCCCCCCcccceeCCceEEEEEEecCCCCccEEEEEeccccccccccEEEEEeCcceEEe
Q psy1440          79 ---YYPYDPPPYLDGVRINSPHYLCKIILNENSSRKYTLVVSQYEKMHTIYYTLRAYATCPFRLE  140 (283)
Q Consensus        79 ---~~~~~~~~~~~g~~~ns~~~l~~~~~~p~~~~~ytlV~s~~e~~~~~~ftL~~~s~~~~~l~  140 (283)
                         +...+......+.|+++.+...+++|+|+   .|++|+++|++..++.|+|++|+..+++|.
T Consensus        86 ~~~~~~~~~~~~~~~~~~~~~~v~~~~~L~~G---~YvIVPsT~~~~~~g~F~L~v~s~~~~~l~  147 (147)
T PF01067_consen   86 PRQYFLFNKPVVSSGDYSNSREVSEEFTLPPG---TYVIVPSTYEPGQEGEFTLRVFSDSPFELQ  147 (147)
T ss_dssp             -HHHHHTS-SSEE-SSEBSSSEEEEEEEE-SE---EEEEEEEESSTT--EEEEEEEEESSSEEE-
T ss_pred             CcceeccccceeeccccccceEEEEEEEcCCC---CEEEEEecCCCCCeeeEEEEEEECCCcccC
Confidence               22223345667889999999999999986   799999999999999999999999999874

Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Cysteine peptidases have characteristic molecular topologies, which can be seen not only in their three-dimensional structures, but commonly also in the two-dimensional structures. These are peptidases in which the nucleophile is the sulphydryl group of a cysteine residue. Cysteine proteases are divided into clans (proteins which are evolutionary related), and further sub-divided into families, on the basis of the architecture of their catalytic dyad or triad []. This group of cysteine peptidases belong to the MEROPS peptidase family C2 (calpain family, clan CA). A type example is calpain, which is an intracellular protease involved in many important cellular functions that are regulated by calcium []. The protein is a complex of 2 polypeptide chains (light and heavy), with three known forms in mammals [, ]: a highly calcium-sensitive (i.e., micro-molar range) form known as mu-calpain, mu-CANP or calpain I; a form sensitive to calcium in the milli-molar range, known as m-calpain, m-CANP or calpain II; and a third form, known as p94, which is found in skeletal muscle only []. All forms have identical light but different heavy chains. Both mu- and m-calpain are heterodimers containing an identical 28kDa subunit and an 80kDa subunit that shares 55-65% sequence homology between the two proteases [, ]. The crystallographic structure of m-calpain reveals six "domains" in the 80kDa subunit: A 19-amino acid NH2-terminal sequence; Active site domain IIa; Active site domain IIb. Domain 2 shows low levels of sequence similarity to papain; although the catalytic His has not been located by biochemical means, it is likely that calpain and papain are related []. Domain III; An 18-amino acid extended sequence linking domain III to domain IV; Domain IV, which resembles the penta EF-hand family of polypeptides, binds calcium and regulates activity []. />]. Ca2+-binding causes a rearrangement of the protein backbone, the net effect of which is that a Trp side chain, which acts as a wedge between catalytic domains IIa and IIb in the apo state, moves away from the active site cleft allowing for the proper formation of the catalytic triad []. Calpain-like mRNAs have been identified in other organisms including bacteria, but the molecules encoded by these mRNAs have not been isolated, so little is known about their properties. How calpain activity is regulated in these organisms cells is still unclear In metazoans, the activity of calpain is controlled by a single proteinase inhibitor, calpastatin (IPR001259 from INTERPRO). The calpastatin gene can produce eight or more calpastatin polypeptides ranging from 17 to 85 kDa by use of different promoters and alternative splicing events. The physiological significance of these different calpastatins is unclear, although all bind to three different places on the calpain molecule; binding to at least two of the sites is Ca2+ dependent. The calpains ostensibly participate in a variety of cellular processes including remodelling of cytoskeletal/membrane attachments, different signal transduction pathways, and apoptosis. Deregulated calpain activity following loss of Ca2+ homeostasis results in tissue damage in response to events such as myocardial infarcts, stroke, and brain trauma []. This entry represents domain III. It is found in association with PF00648 from PFAM. The function of the domain III and I are currently unknown. Domain II is a cysteine protease and domain IV is a calcium binding domain. Calpains are believed to participate in intracellular signaling pathways mediated by calcium ions. ; PDB: 1QXP_B 2QFE_A 1DF0_A 1U5I_A 3DF0_A 3BOW_A 1KFU_L 1KFX_L.

>cd00214 Calpain_III Calpain, subdomain III

Probab=99.53  E-value=1.2e-13  Score=113.05  Aligned_cols=130  Identities=21%  Similarity=0.229  Sum_probs=96.7

Q ss_pred             ccceecccCCC--CCCc-CCCCCCCCCcEEEEEcCCC-----ceEEEEEEecccccc-cccCCCCeEEEEEEeeCCeEEE
Q psy1440           9 ENYLLAYTAGQ--GPIK-DVYNIGENPQFRLEVGGGV-----GAVWILLTRHITQLE-DFKQNREYITVLVYKNEGKRVY   79 (283)
Q Consensus         9 ~~ly~nW~p~~--~~~~-d~~~~~~NPQy~l~~~~~~-----~~vwvlL~rH~~~~~-d~~~~~~~i~l~v~~~~g~rv~   79 (283)
                      ..+...|..+.  |.++ +..+|+.||||.|++....     .+|.|.|.+...... +...+...|+++||+.++....
T Consensus         6 ~~~~G~W~~g~tAGGc~~~~~tf~~NPQf~l~v~~~~~~~~~~~v~i~L~q~~~r~~~~~~~~~~~IGf~v~~~~~~~~~   85 (150)
T cd00214           6 KSFNGEWRRGQTAGGCRNNPDTFWTNPQFRIRVPEPDDDEGKCTVLIALMQKNRRHLRKKGLDLLTIGFHVYKVPGENRH   85 (150)
T ss_pred             EEEeCeEeCCcccCCCCCcccccccCceEEEEecCCCCCCCccEEEEEeccCCcchhcccCCCcceEEEEEEEeCCcCcc
Confidence            34567898842  6664 4479999999999998642     689998888653322 2223456799999998663222


Q ss_pred             ccC----CCCC-CcccceeCCceEEEEEEecCCCCccEEEEEeccccccccccEEEEEeCcceEEec
Q psy1440          80 YPY----DPPP-YLDGVRINSPHYLCKIILNENSSRKYTLVVSQYEKMHTIYYTLRAYATCPFRLEK  141 (283)
Q Consensus        80 ~~~----~~~~-~~~g~~~ns~~~l~~~~~~p~~~~~ytlV~s~~e~~~~~~ftL~~~s~~~~~l~~  141 (283)
                      ++.    ...+ ...+.|.|++++.+++.++||   .|++|+++|++..+..|.|++|+..++++++
T Consensus        86 ~~~~~~~~~~~~~~s~~~~~~rev~~~~~L~pG---~YvIIPsT~~p~~~g~F~LrVfs~~~~~~~~  149 (150)
T cd00214          86 LRRDFFLHKAPRARSSTFINTREVSLRFRLPPG---EYVIVPSTFEPGEEGEFLLRVFSEKSIKSSE  149 (150)
T ss_pred             cChhhhhccCcccccCccccccEEEEEEEcCCC---CEEEEeeecCCCCcccEEEEEEecCCCcccc
Confidence            221    1122 346678999999999999986   8999999999999999999999999887653

Calpains are calcium-activated cytoplasmic cysteine proteinases, participate in cytoskeletal remodeling processes, cell differentiation, apoptosis and signal transduction. Catalytic domain and the two calmodulin-like domains are separated by C2-like domain III. Domain III plays an important role in calcium-induced activation of calpain involving electrostatic interactions with subdomain II. Proposed to mediate calpain's interaction with phospholipids and translocation to cytoplasmic/nuclear membranes. CD includes subdomain III of typical and atypical calpains.

>KOG0045|consensus

Probab=99.47  E-value=1.7e-13  Score=134.05  Aligned_cols=128  Identities=20%  Similarity=0.232  Sum_probs=99.1

Q ss_pred             ccceee--eCCC---CCCCCCCCCCCCCeEEEEEcCCC---ceEEEeeec-cccccccccCCceEEEEEEEEeCCce-ee
Q psy1440         142 RPQASW--SAGQ---GPIKDVYNIGENPQFRLEVGGGV---GAVWILLTR-HITQLEDFKQNREYITVLVYKNEGKR-VY  211 (283)
Q Consensus       142 ~~~G~W--~~~~---Gg~~~~~tf~~NPQy~l~v~~~~---~~v~i~L~~-~~~~~~~~~i~~~~i~~~v~~~~g~r-v~  211 (283)
                      ..+|+|  ..+.   ||.++.++|++||||.+.+.+..   +.+.+.|.| ++++.+.+..++..|++++|+..+.+ .+
T Consensus       347 ~~~~~w~~~~~~t~ggc~~~~~tF~~npq~~~~~~~~~~~~~~~v~~~~q~~~~~~~~~~~~~~~ig~~i~~v~~~~~~~  426 (612)
T KOG0045|consen  347 SLDGEWELARGVTAGGCRNSVDTFDRNPQYILAVRKPTKSLCAVVLALFQKTRRGERSFGANILDIGFHIYEVPLEGKYF  426 (612)
T ss_pred             ecCCccceeecccCCCCccCcccccCCceEEEEecCCCccceEEEEEeecccccccccccceeeecceEEEEecCCCCce
Confidence            779999  4443   77888789999999999998522   455555555 55555666667778999999987552 22


Q ss_pred             cCCCCCCcccCccccCcceEEEEEEecCCCccEEEEeeccCCCCcccEEEEEEeCCCceee
Q psy1440         212 YPYDPPPYLDGVRINSPHYLCKIILNENSSRKYTLVVSQYEKMHTIYYTLRAYATCPFRLE  272 (283)
Q Consensus       212 ~~~~~~~~~sg~y~~~~~~~~~~~l~~l~~G~Y~vVpST~~p~~~g~F~L~v~s~~~~~l~  272 (283)
                      .....+++.+..+++.|++..++.   +|||.|.+|||||+|++++.|.|||||...+..+
T Consensus       427 ~~~~~~~~~~~~~i~~r~v~~~~~---~P~~~y~~~pst~~~~~~~~f~lrvfs~~~~~~~  484 (612)
T KOG0045|consen  427 VLDNAPIASSSSFINNREVSVRFR---LPPGTYVIVPSTFEPGEEGEFLLRVFSNVKVKSE  484 (612)
T ss_pred             EecccchhcccccccceeEEEEec---CCCcceeecccCCCCCCCccEEEEEeecccccCc
Confidence            333455678889999999777765   5999999999999999999999999998876655

>KOG0045|consensus

Probab=98.81  E-value=6.8e-08  Score=95.03  Aligned_cols=136  Identities=17%  Similarity=0.187  Sum_probs=102.7

Q ss_pred             cchhcccccceecccCCCCC---------------------------Cc-CCCCCCCCCcEEEEEcCC-C---ceEEEEE
Q psy1440           2 KAVKSYWENYLLAYTAGQGP---------------------------IK-DVYNIGENPQFRLEVGGG-V---GAVWILL   49 (283)
Q Consensus         2 ~~v~~~f~~ly~nW~p~~~~---------------------------~~-d~~~~~~NPQy~l~~~~~-~---~~vwvlL   49 (283)
                      +|+|++|+.++++|....+.                           ++ +..++..||||.+.+... .   .-||.++
T Consensus       316 ~dF~~~F~~~~vC~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~t~ggc~~~~~tF~~npq~~~~~~~~~~~~~~~v~~~~  395 (612)
T KOG0045|consen  316 DDFLREFDSLTVCRLRPDWLESRNQLQWVKLSLDGEWELARGVTAGGCRNSVDTFDRNPQYILAVRKPTKSLCAVVLALF  395 (612)
T ss_pred             HHHHhhCCeEeecCCCcchhhhhheeeeeeeecCCccceeecccCCCCccCcccccCCceEEEEecCCCccceEEEEEee
Confidence            57899999999999876521                           11 125899999999999763 2   4688888


Q ss_pred             EecccccccccCCCCeEEEEEEeeCCe-EEEccCCCCCCcccceeCCceEEEEEEecCCCCccEEEEEeccccccccccE
Q psy1440          50 TRHITQLEDFKQNREYITVLVYKNEGK-RVYYPYDPPPYLDGVRINSPHYLCKIILNENSSRKYTLVVSQYEKMHTIYYT  128 (283)
Q Consensus        50 ~rH~~~~~d~~~~~~~i~l~v~~~~g~-rv~~~~~~~~~~~g~~~ns~~~l~~~~~~p~~~~~ytlV~s~~e~~~~~~ft  128 (283)
                      .+|+.+..++..+-..|++++|+.++. .-++..+..+..-+.++|.....++++++|+   .|.+|+++|++..+..|.
T Consensus       396 q~~~~~~~~~~~~~~~ig~~i~~v~~~~~~~~~~~~~~~~~~~~i~~r~v~~~~~~P~~---~y~~~pst~~~~~~~~f~  472 (612)
T KOG0045|consen  396 QKTRRGERSFGANILDIGFHIYEVPLEGKYFVLDNAPIASSSSFINNREVSVRFRLPPG---TYVIVPSTFEPGEEGEFL  472 (612)
T ss_pred             cccccccccccceeeecceEEEEecCCCCceEecccchhcccccccceeEEEEecCCCc---ceeecccCCCCCCCccEE
Confidence            888887766655667788999998644 2222222223345568889999999998775   899999999999999999


Q ss_pred             EEEEeCcceEEe
Q psy1440         129 LRAYATCPFRLE  140 (283)
Q Consensus       129 L~~~s~~~~~l~  140 (283)
                      |++|++..+...
T Consensus       473 lrvfs~~~~~~~  484 (612)
T KOG0045|consen  473 LRVFSNVKVKSE  484 (612)
T ss_pred             EEEeecccccCc
Confidence            999998775444

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	283
3bow_A	714	Calpain-2 catalytic subunit; cysteine protease, in	4e-12
3bow_A	714	Calpain-2 catalytic subunit; cysteine protease, in	5e-12
1qxp_A	900	MU-like calpain; M-calpain, MU-calpain, catalytic	9e-10
1qxp_A	900	MU-like calpain; M-calpain, MU-calpain, catalytic	1e-09

>3bow_A Calpain-2 catalytic subunit; cysteine protease, inhibitor, cell membrane, hydrolase, MEMB protease, thiol protease, phosphoprotein; 2.40A {Rattus norvegicus} PDB: 3df0_A 1df0_A 1u5i_A 1kfu_L 1kfx_L Length = 714

 Score = 65.6 bits (159), Expect = 4e-12
 Identities = 22/144 (15%), Positives = 43/144 (29%), Gaps = 24/144 (16%)

Query: 15  YTAGQGPIKDVYNIGENPQFRLEV----------GGGVGAVWILLTRHITQLEDFKQNRE 64
            TAG G          NPQ+ +++            G   +  L+ +H  +     ++  
Sbjct: 369 STAG-GCRNYPNTFWMNPQYLIKLEEEDEDDEDGERGCTFLVGLIQKHRRRQRKMGEDMH 427

Query: 65  YITVLVYKNEG----------KRVYYPYDPPPYLDGVRINSPHYLCKIILNENSSRKYTL 114
            I   +Y+              + ++            IN    L +  L       Y L
Sbjct: 428 TIGFGIYEVPEELTGQTNIHLSKNFFLTTRARERSDTFINLREVLNRFKLPPGE---YVL 484

Query: 115 VVSQYEKMHTIYYTLRAYATCPFR 138
           V S +E      + +R ++     
Sbjct: 485 VPSTFEPHKNGDFCIRVFSEKKAD 508

>3bow_A Calpain-2 catalytic subunit; cysteine protease, inhibitor, cell membrane, hydrolase, MEMB protease, thiol protease, phosphoprotein; 2.40A {Rattus norvegicus} PDB: 3df0_A 1df0_A 1u5i_A 1kfu_L 1kfx_L Length = 714

 Score = 64.8 bits (157), Expect = 5e-12
 Identities = 21/157 (13%), Positives = 48/157 (30%), Gaps = 26/157 (16%)

Query: 146 SWSAGQ---GPIKDVYNIGENPQFRLEV----------GGGVGAVWILLTRHITQLEDFK 192
           +W  G    G          NPQ+ +++            G   +  L+ +H  +     
Sbjct: 364 NWRRGSTAGGCRNYPNTFWMNPQYLIKLEEEDEDDEDGERGCTFLVGLIQKHRRRQRKMG 423

Query: 193 QNREYITVLVYKNEG----------KRVYYPYDPPPYLDGVRINSPHYLCKIILNENSSR 242
           ++   I   +Y+              + ++            IN    L +  L      
Sbjct: 424 EDMHTIGFGIYEVPEELTGQTNIHLSKNFFLTTRARERSDTFINLREVLNRFKLPPGE-- 481

Query: 243 KYTLVVSQYEKMHTIYYTLRAYATCPFRLEKIENPYQ 279
            Y LV S +E      + +R ++      + +++  +
Sbjct: 482 -YVLVPSTFEPHKNGDFCIRVFSEKKADYQTVDDEIE 517

>1qxp_A MU-like calpain; M-calpain, MU-calpain, catalytic triad, Ca(2+) requirement, hydrolase chimera; 2.80A {Rattus norvegicus} SCOP: a.39.1.8 a.39.1.8 b.14.1.1 d.3.1.3 Length = 900

 Score = 58.2 bits (140), Expect = 9e-10
 Identities = 26/158 (16%), Positives = 54/158 (34%), Gaps = 21/158 (13%)

Query: 146 SWSAGQ---GPIKDVYNIGENPQFRLEV------------GGGVGAVWILLTRHITQLED 190
           +W  G    G          NPQF++ +              G   +  L+ +H  +   
Sbjct: 364 TWRRGSTAGGCRNYPATFWVNPQFKIRLEEVDDADDYDSRESGCSFLLALMQKHRRRERR 423

Query: 191 FKQNREYITVLVYKNEGKRVYYPYDPPPYL---DGVRINSPHYLCKIILNENSS---RKY 244
           F ++ E I   VY+   +    P          +  R  S H++    ++        +Y
Sbjct: 424 FGRDMETIGFAVYQVPRELAGQPVHLKRDFFLANASRAQSEHFINLREVSNRIRLPPGEY 483

Query: 245 TLVVSQYEKMHTIYYTLRAYATCPFRLEKIENPYQFKE 282
            +V S +E      + LR ++      +++++  Q   
Sbjct: 484 IVVPSTFEPNKEGDFLLRFFSEKKAGTQELDDQIQANL 521

>1qxp_A MU-like calpain; M-calpain, MU-calpain, catalytic triad, Ca(2+) requirement, hydrolase chimera; 2.80A {Rattus norvegicus} SCOP: a.39.1.8 a.39.1.8 b.14.1.1 d.3.1.3 Length = 900

 Score = 57.9 bits (139), Expect = 1e-09
 Identities = 26/171 (15%), Positives = 53/171 (30%), Gaps = 19/171 (11%)

Query: 15  YTAGQGPIKDVYNIGENPQFRLEV------------GGGVGAVWILLTRHITQLEDFKQN 62
            TAG G          NPQF++ +              G   +  L+ +H  +   F ++
Sbjct: 369 STAG-GCRNYPATFWVNPQFKIRLEEVDDADDYDSRESGCSFLLALMQKHRRRERRFGRD 427

Query: 63  REYITVLVYKNEGKRVYYPYDPPPYL---DGVRINSPHYLCKIILNENSS---RKYTLVV 116
            E I   VY+   +    P          +  R  S H++    ++        +Y +V 
Sbjct: 428 METIGFAVYQVPRELAGQPVHLKRDFFLANASRAQSEHFINLREVSNRIRLPPGEYIVVP 487

Query: 117 SQYEKMHTIYYTLRAYATCPFRLEKRPQASWSAGQGPIKDVYNIGENPQFR 167
           S +E      + LR ++      ++      +             ++    
Sbjct: 488 STFEPNKEGDFLLRFFSEKKAGTQELDDQIQANLPDEKVLSEEEIDDNFKT 538

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	283
2qfe_A	148	Calpain-7; C2-like domain, hydrolase, nuclear prot	99.93
1qxp_A	900	MU-like calpain; M-calpain, MU-calpain, catalytic	99.8
3bow_A	714	Calpain-2 catalytic subunit; cysteine protease, in	99.78
1qxp_A	900	MU-like calpain; M-calpain, MU-calpain, catalytic	99.32
2qfe_A	148	Calpain-7; C2-like domain, hydrolase, nuclear prot	99.31
3bow_A	714	Calpain-2 catalytic subunit; cysteine protease, in	99.12
3sg6_A	450	Gcamp2, myosin light chain kinase, green fluoresce	93.47

>2qfe_A Calpain-7; C2-like domain, hydrolase, nuclear protein, protease, thiol protease; 1.45A {Homo sapiens}

Probab=99.93  E-value=9.6e-26  Score=182.73  Aligned_cols=121  Identities=16%  Similarity=0.121  Sum_probs=90.3

Q ss_pred             cccceeeeCCC--CCCCCCCCCCCCCeEEEEEcCCCceEEEeeeccccccccccCCceEEEEEEEEeCCceeecCCCCCC
Q psy1440         141 KRPQASWSAGQ--GPIKDVYNIGENPQFRLEVGGGVGAVWILLTRHITQLEDFKQNREYITVLVYKNEGKRVYYPYDPPP  218 (283)
Q Consensus       141 ~~~~G~W~~~~--Gg~~~~~tf~~NPQy~l~v~~~~~~v~i~L~~~~~~~~~~~i~~~~i~~~v~~~~g~rv~~~~~~~~  218 (283)
                      .+++|+|++.+  ||.++.+|||+||||.|+|.+ +|+|+|.|..    .+.+     .||++||+++..+......-..
T Consensus        25 ~~~~G~W~g~tAGGc~n~~~tf~~NPQy~l~l~~-~~~v~i~L~~----~~~~-----~IGf~v~~v~~~~~~l~~~f~~   94 (148)
T 2qfe_A           25 KRINGKWSGQSAGGCGNFQETHKNNPIYQFHIEK-TGPLLIELRG----PRQY-----SVGFEVVTVSTLGDPGPHGFLR   94 (148)
T ss_dssp             EEEEEEECGGGCCCCTTCTTTGGGSCCEEEEESS-CEEEEEEEEC----CTTS-----EEEEEEEEEECCSCCCTTCCSE
T ss_pred             EEEcCEECCCccCCCccccccccCCcEEEEEEcC-CccEEEEecC----CCcc-----ccceEEEEECCCCCccccceee
Confidence            36799996555  555555799999999999995 7899999943    2233     4667799875433222211112


Q ss_pred             cccCccccCcceEEEEEEecCCCccEEEEeeccCCCCcccEEEEEEeCCCceeeec
Q psy1440         219 YLDGVRINSPHYLCKIILNENSSRKYTLVVSQYEKMHTIYYTLRAYATCPFRLEKI  274 (283)
Q Consensus       219 ~~sg~y~~~~~~~~~~~l~~l~~G~Y~vVpST~~p~~~g~F~L~v~s~~~~~l~~i  274 (283)
                      ..++.|.+.+++..++.   |+||.|+||||||+|+++|+|.|||||+.++.+++|
T Consensus        95 ~~s~~~~~~~~v~~~~~---L~pG~YvIVPSTf~P~~eg~F~LrVfs~~~~~l~~l  147 (148)
T 2qfe_A           95 KSSGDYRCGFCYLELEN---IPSGIFNIIPSTFLPKQEGPFFLDFNSIIPIKITQL  147 (148)
T ss_dssp             EECCSCEESEEEEEEEE---ECSEEEEEEEEESSTTCCEEEEEEEEESSCCEEEEC
T ss_pred             eCCceeccCceEEEEEE---cCCCCEEEEeccCCCCCccceEEEEEeCCCCeeEeC
Confidence            46788866566555554   599999999999999999999999999999999987

>1qxp_A MU-like calpain; M-calpain, MU-calpain, catalytic triad, Ca(2+) requirement, hydrolase chimera; 2.80A {Rattus norvegicus} SCOP: a.39.1.8 a.39.1.8 b.14.1.1 d.3.1.3

Probab=99.80  E-value=2.3e-19  Score=183.34  Aligned_cols=135  Identities=19%  Similarity=0.238  Sum_probs=100.6

Q ss_pred             ccceeeeCCC---CCCCCCCCCCCCCeEEEEEcCC-----------CceEEEeeecccc-ccccccCCceEEEEEEEEeC
Q psy1440         142 RPQASWSAGQ---GPIKDVYNIGENPQFRLEVGGG-----------VGAVWILLTRHIT-QLEDFKQNREYITVLVYKNE  206 (283)
Q Consensus       142 ~~~G~W~~~~---Gg~~~~~tf~~NPQy~l~v~~~-----------~~~v~i~L~~~~~-~~~~~~i~~~~i~~~v~~~~  206 (283)
                      .++|+|.+|+   ||.+++.||+.||||.|++.+.           +|+|+|.|+|+.+ ..+........||++||+++
T Consensus       360 ~~~g~W~~g~taGG~~~~~~tf~~NPqf~l~v~~~~~~~~~~~~~~~~~v~i~L~Q~~~r~~~~~~~~~~~igf~v~~~~  439 (900)
T 1qxp_A          360 FYEGTWRRGSTAGGCRNYPATFWVNPQFKIRLEEVDDADDYDSRESGCSFLLALMQKHRRRERRFGRDMETIGFAVYQVP  439 (900)
T ss_dssp             EEEEEECTTTTCCCCTTCTTTGGGSCBCEEEECSCCC-----CCSSCCEEEEEEEEC----------CCCCEEEEEEECC
T ss_pred             eccccccCCCCCCCCCCcccccccCceEEEEEccCCccccccccCCCcEEEEEeeecccccccccCCCceeeEEEEEEec
Confidence            5699999885   5666668999999999999742           2789999988432 22322334556889999874


Q ss_pred             C----cee-----ecCCCCCCcccCccccCcceEEEEEEecCCCccEEEEeeccCCCCcccEEEEEEeCCCceeeecCCC
Q psy1440         207 G----KRV-----YYPYDPPPYLDGVRINSPHYLCKIILNENSSRKYTLVVSQYEKMHTIYYTLRAYATCPFRLEKIENP  277 (283)
Q Consensus       207 g----~rv-----~~~~~~~~~~sg~y~~~~~~~~~~~l~~l~~G~Y~vVpST~~p~~~g~F~L~v~s~~~~~l~~i~~~  277 (283)
                      .    .+.     ++.....++.++.|+++|++.+++.|   +||+|+||||||+|+++|+|+|||||..++.+.++...
T Consensus       440 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~Rev~~~~~L---~pG~Y~IVPst~~p~~e~~F~Lrv~s~~~~~~~eld~~  516 (900)
T 1qxp_A          440 RELAGQPVHLKRDFFLANASRAQSEHFINLREVSNRIRL---PPGEYIVVPSTFEPNKEGDFLLRFFSEKKAGTQELDDQ  516 (900)
T ss_dssp             SCC----CCCCHHHHTTSCCCSBCSSCBSSSCEEEEEEC---CSEEEEEEEEESSSSCCEEEEEEEEESSCEEECCBCCC
T ss_pred             cccccccccCChhhhccCCCccccCCccccCceeEeEEe---CCCCEEEEeecCCCCCCCCceEEEeccCCcceeecCcc
Confidence            2    222     22333445678899999998888765   99999999999999999999999999999998887766


Q ss_pred             Cc
Q psy1440         278 YQ  279 (283)
Q Consensus       278 ~~  279 (283)
                      ..
T Consensus       517 ~~  518 (900)
T 1qxp_A          517 IQ  518 (900)
T ss_dssp             CE
T ss_pred             cc
Confidence            53

>3bow_A Calpain-2 catalytic subunit; cysteine protease, inhibitor, cell membrane, hydrolase, MEMB protease, thiol protease, phosphoprotein; 2.40A {Rattus norvegicus} PDB: 3df0_A 1df0_A 1u5i_A 1kfu_L 1kfx_L

Probab=99.78  E-value=1.3e-19  Score=180.91  Aligned_cols=135  Identities=14%  Similarity=0.230  Sum_probs=100.5

Q ss_pred             ccceeeeCCC--CC-CCCCCCCCCCCeEEEEEcCC---------CceEEEeeeccc-cccccccCCceEEEEEEEEeCC-
Q psy1440         142 RPQASWSAGQ--GP-IKDVYNIGENPQFRLEVGGG---------VGAVWILLTRHI-TQLEDFKQNREYITVLVYKNEG-  207 (283)
Q Consensus       142 ~~~G~W~~~~--Gg-~~~~~tf~~NPQy~l~v~~~---------~~~v~i~L~~~~-~~~~~~~i~~~~i~~~v~~~~g-  207 (283)
                      .++|+|.++.  || .++..||+.||||.|+|.+.         +|+|+|.|+|+. |..+........|+++||+++. 
T Consensus       360 ~~~g~W~~g~taGG~~~~~~tf~~NPqf~l~v~~~~~~~~~~~~~~~v~v~L~Q~~~r~~~~~g~~~~~Igf~v~~~~~~  439 (714)
T 3bow_A          360 KMDGNWRRGSTAGGCRNYPNTFWMNPQYLIKLEEEDEDDEDGERGCTFLVGLIQKHRRRQRKMGEDMHTIGFGIYEVPEE  439 (714)
T ss_dssp             EEEEEECTTTTCCCCTTCHHHHTTSCCEEEEECGGGCBCGGGCCBEEEEEEEEEESCGGGGGGTCCCCCEEEEEEECCGG
T ss_pred             EEeceeccCCCCCCCCCccccccCCceEEEEEccCCccccccCCccEEEEEeeeeccccccccCCCcceEEEEEEEeccc
Confidence            5799999876  54 45447999999999999741         268999998843 2223233445678899998742 


Q ss_pred             ---c------eeecCCCCCCcccCccccCcceEEEEEEecCCCccEEEEeeccCCCCcccEEEEEEeCCCceeeecCCCC
Q psy1440         208 ---K------RVYYPYDPPPYLDGVRINSPHYLCKIILNENSSRKYTLVVSQYEKMHTIYYTLRAYATCPFRLEKIENPY  278 (283)
Q Consensus       208 ---~------rv~~~~~~~~~~sg~y~~~~~~~~~~~l~~l~~G~Y~vVpST~~p~~~g~F~L~v~s~~~~~l~~i~~~~  278 (283)
                         .      +.++.....++.++.|.+.|++.+++.|   +||+|+||||||+|+++|+|.|||||..+..+.++++..
T Consensus       440 ~~~~~~~~l~~~ff~~~~~~~~s~~f~~~Rev~~~~~L---~pG~Y~IVPstf~p~~e~~F~Lrv~s~~~~~~~el~~~~  516 (714)
T 3bow_A          440 LTGQTNIHLSKNFFLTTRARERSDTFINLREVLNRFKL---PPGEYVLVPSTFEPHKNGDFCIRVFSEKKADYQTVDDEI  516 (714)
T ss_dssp             GSSCTTCCCCHHHHHHCCCSEECSCEESSSEEEEEEEE---CSEEEEEEEEESSTTCCEEEEEEEEEEESSCC--CCCSC
T ss_pred             ccCccccccchhhccccCCccccCCcccccceEEEEEe---CCCCeEEEEecCCCCCccceeEEEeccCCcceeeccccc
Confidence               1      1122223345677899999998888876   999999999999999999999999999999888887764


Q ss_pred             c
Q psy1440         279 Q  279 (283)
Q Consensus       279 ~  279 (283)
                      .
T Consensus       517 ~  517 (714)
T 3bow_A          517 E  517 (714)
T ss_dssp             E
T ss_pred             c
Confidence            3

>1qxp_A MU-like calpain; M-calpain, MU-calpain, catalytic triad, Ca(2+) requirement, hydrolase chimera; 2.80A {Rattus norvegicus} SCOP: a.39.1.8 a.39.1.8 b.14.1.1 d.3.1.3

Probab=99.32  E-value=5.9e-12  Score=128.63  Aligned_cols=137  Identities=18%  Similarity=0.181  Sum_probs=96.9

Q ss_pred             cchhccccccee-cccCCCCC------------------------CcCC-CCCCCCCcEEEEEcCC-----------Cce
Q psy1440           2 KAVKSYWENYLL-AYTAGQGP------------------------IKDV-YNIGENPQFRLEVGGG-----------VGA   44 (283)
Q Consensus         2 ~~v~~~f~~ly~-nW~p~~~~------------------------~~d~-~~~~~NPQy~l~~~~~-----------~~~   44 (283)
                      ++++++|+.+++ +|+|+.+.                        +++. .+++.||||.|++...           ..+
T Consensus       329 ~df~~~F~~~~ic~~~~~~~~~~~~~~w~~~~~~g~W~~g~taGG~~~~~~tf~~NPqf~l~v~~~~~~~~~~~~~~~~~  408 (900)
T 1qxp_A          329 RDFIREFTKLEICNLTPDALKSRTLRNWNTTFYEGTWRRGSTAGGCRNYPATFWVNPQFKIRLEEVDDADDYDSRESGCS  408 (900)
T ss_dssp             TTSSSCSEEEEEBCCCC--CCSSCSCCCBCCEEEEEECTTTTCCCCTTCTTTGGGSCBCEEEECSCCC-----CCSSCCE
T ss_pred             HHHHhhCCeEEEEEecchhhccccCCceEEEeccccccCCCCCCCCCCcccccccCceEEEEEccCCccccccccCCCcE
Confidence            589999999998 77776431                        1122 4678899999999642           157


Q ss_pred             EEEEEEecccccc-cccCCCCeEEEEEEeeC----CeEEEccC-----CCCCCcccceeCCceEEEEEEecCCCCccEEE
Q psy1440          45 VWILLTRHITQLE-DFKQNREYITVLVYKNE----GKRVYYPY-----DPPPYLDGVRINSPHYLCKIILNENSSRKYTL  114 (283)
Q Consensus        45 vwvlL~rH~~~~~-d~~~~~~~i~l~v~~~~----g~rv~~~~-----~~~~~~~g~~~ns~~~l~~~~~~p~~~~~ytl  114 (283)
                      |||.|.|+-.... ........|+++||+.+    |.++.++.     .......+.|+|++++.++++++||   .|.+
T Consensus       409 v~i~L~Q~~~r~~~~~~~~~~~igf~v~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~Rev~~~~~L~pG---~Y~I  485 (900)
T 1qxp_A          409 FLLALMQKHRRRERRFGRDMETIGFAVYQVPRELAGQPVHLKRDFFLANASRAQSEHFINLREVSNRIRLPPG---EYIV  485 (900)
T ss_dssp             EEEEEEEC----------CCCCEEEEEEECCSCC----CCCCHHHHTTSCCCSBCSSCBSSSCEEEEEECCSE---EEEE
T ss_pred             EEEEeeecccccccccCCCceeeEEEEEEeccccccccccCChhhhccCCCccccCCccccCceeEeEEeCCC---CEEE
Confidence            9999988743221 11123356999999974    33443432     2234456889999999999999996   8999


Q ss_pred             EEeccccccccccEEEEEeCcceEEec
Q psy1440         115 VVSQYEKMHTIYYTLRAYATCPFRLEK  141 (283)
Q Consensus       115 V~s~~e~~~~~~ftL~~~s~~~~~l~~  141 (283)
                      |+++|++..+..|+|++||..++.+.+
T Consensus       486 VPst~~p~~e~~F~Lrv~s~~~~~~~e  512 (900)
T 1qxp_A          486 VPSTFEPNKEGDFLLRFFSEKKAGTQE  512 (900)
T ss_dssp             EEEESSSSCCEEEEEEEEESSCEEECC
T ss_pred             EeecCCCCCCCCceEEEeccCCcceee
Confidence            999999988999999999999987654

>2qfe_A Calpain-7; C2-like domain, hydrolase, nuclear protein, protease, thiol protease; 1.45A {Homo sapiens}

Probab=99.31  E-value=1e-11  Score=100.13  Aligned_cols=120  Identities=12%  Similarity=0.073  Sum_probs=87.0

Q ss_pred             ccceecccCC-CCCCcCCC-CCCCCCcEEEEEcCCCceEEEEEEecccccccccCCCCeEEEEEEeeCCeEEEccCCCCC
Q psy1440           9 ENYLLAYTAG-QGPIKDVY-NIGENPQFRLEVGGGVGAVWILLTRHITQLEDFKQNREYITVLVYKNEGKRVYYPYDPPP   86 (283)
Q Consensus         9 ~~ly~nW~p~-~~~~~d~~-~~~~NPQy~l~~~~~~~~vwvlL~rH~~~~~d~~~~~~~i~l~v~~~~g~rv~~~~~~~~   86 (283)
                      ..+-..|... -|.+++.. +++.||||.|++... ++|.|.|..         ...--|+++||+.+..+..++..-..
T Consensus        25 ~~~~G~W~g~tAGGc~n~~~tf~~NPQy~l~l~~~-~~v~i~L~~---------~~~~~IGf~v~~v~~~~~~l~~~f~~   94 (148)
T 2qfe_A           25 KRINGKWSGQSAGGCGNFQETHKNNPIYQFHIEKT-GPLLIELRG---------PRQYSVGFEVVTVSTLGDPGPHGFLR   94 (148)
T ss_dssp             EEEEEEECGGGCCCCTTCTTTGGGSCCEEEEESSC-EEEEEEEEC---------CTTSEEEEEEEEEECCSCCCTTCCSE
T ss_pred             EEEcCEECCCccCCCccccccccCCcEEEEEEcCC-ccEEEEecC---------CCccccceEEEEECCCCCccccceee
Confidence            3566889533 26677764 999999999999874 889998842         11246999999974322222221111


Q ss_pred             CcccceeCCceEEEEEEecCCCCccEEEEEeccccccccccEEEEEeCcceEEec
Q psy1440          87 YLDGVRINSPHYLCKIILNENSSRKYTLVVSQYEKMHTIYYTLRAYATCPFRLEK  141 (283)
Q Consensus        87 ~~~g~~~ns~~~l~~~~~~p~~~~~ytlV~s~~e~~~~~~ftL~~~s~~~~~l~~  141 (283)
                      ...+.|.+......++.|+||   .|++|+|+|++..+..|.|++|+..++.+++
T Consensus        95 ~~s~~~~~~~~v~~~~~L~pG---~YvIVPSTf~P~~eg~F~LrVfs~~~~~l~~  146 (148)
T 2qfe_A           95 KSSGDYRCGFCYLELENIPSG---IFNIIPSTFLPKQEGPFFLDFNSIIPIKITQ  146 (148)
T ss_dssp             EECCSCEESEEEEEEEEECSE---EEEEEEEESSTTCCEEEEEEEEESSCCEEEE
T ss_pred             eCCceeccCceEEEEEEcCCC---CEEEEeccCCCCCccceEEEEEeCCCCeeEe
Confidence            234455555667778899986   9999999999999999999999999987764

>3bow_A Calpain-2 catalytic subunit; cysteine protease, inhibitor, cell membrane, hydrolase, MEMB protease, thiol protease, phosphoprotein; 2.40A {Rattus norvegicus} PDB: 3df0_A 1df0_A 1u5i_A 1kfu_L 1kfx_L

Probab=99.12  E-value=5.8e-11  Score=118.47  Aligned_cols=136  Identities=13%  Similarity=0.136  Sum_probs=94.6

Q ss_pred             cchhcccccceec-ccCCCC------------------------CCcCC-CCCCCCCcEEEEEcCC---------CceEE
Q psy1440           2 KAVKSYWENYLLA-YTAGQG------------------------PIKDV-YNIGENPQFRLEVGGG---------VGAVW   46 (283)
Q Consensus         2 ~~v~~~f~~ly~n-W~p~~~------------------------~~~d~-~~~~~NPQy~l~~~~~---------~~~vw   46 (283)
                      +|++++|+.++++ +.|+..                        .+++. .+++.||||.|++...         +.+|+
T Consensus       329 ~df~~~F~~~~ic~~~~~~~~~~~~~~w~~~~~~g~W~~g~taGG~~~~~~tf~~NPqf~l~v~~~~~~~~~~~~~~~v~  408 (714)
T 3bow_A          329 SDFLRHYSRLEICNLTPDTLTCDSYKKWKLTKMDGNWRRGSTAGGCRNYPNTFWMNPQYLIKLEEEDEDDEDGERGCTFL  408 (714)
T ss_dssp             HHHHHHCCEEEEEESSSSCTTCSSCCEEEEEEEEEEECTTTTCCCCTTCHHHHTTSCCEEEEECGGGCBCGGGCCBEEEE
T ss_pred             HHHHhhCCeEEEEEecccccccccCcceEEEEEeceeccCCCCCCCCCccccccCCceEEEEEccCCccccccCCccEEE
Confidence            4789999999985 344321                        12222 3678899999999642         25799


Q ss_pred             EEEEecccccc-cccCCCCeEEEEEEeeCC----eE-EEccC-----CCCCCcccceeCCceEEEEEEecCCCCccEEEE
Q psy1440          47 ILLTRHITQLE-DFKQNREYITVLVYKNEG----KR-VYYPY-----DPPPYLDGVRINSPHYLCKIILNENSSRKYTLV  115 (283)
Q Consensus        47 vlL~rH~~~~~-d~~~~~~~i~l~v~~~~g----~r-v~~~~-----~~~~~~~g~~~ns~~~l~~~~~~p~~~~~ytlV  115 (283)
                      |.|.++-.... ........|+++||+.+.    .+ +.++.     .......+.|+|++++.+++.|+||   .|++|
T Consensus       409 v~L~Q~~~r~~~~~g~~~~~Igf~v~~~~~~~~~~~~~~l~~~ff~~~~~~~~s~~f~~~Rev~~~~~L~pG---~Y~IV  485 (714)
T 3bow_A          409 VGLIQKHRRRQRKMGEDMHTIGFGIYEVPEELTGQTNIHLSKNFFLTTRARERSDTFINLREVLNRFKLPPG---EYVLV  485 (714)
T ss_dssp             EEEEEESCGGGGGGTCCCCCEEEEEEECCGGGSSCTTCCCCHHHHHHCCCSEECSCEESSSEEEEEEEECSE---EEEEE
T ss_pred             EEeeeeccccccccCCCcceEEEEEEEecccccCccccccchhhccccCCccccCCcccccceEEEEEeCCC---CeEEE
Confidence            99988743321 112334569999999732    11 22211     1122335789999999999999996   89999


Q ss_pred             EeccccccccccEEEEEeCcceEEe
Q psy1440         116 VSQYEKMHTIYYTLRAYATCPFRLE  140 (283)
Q Consensus       116 ~s~~e~~~~~~ftL~~~s~~~~~l~  140 (283)
                      +++|++..+..|+|++||..+..+.
T Consensus       486 Pstf~p~~e~~F~Lrv~s~~~~~~~  510 (714)
T 3bow_A          486 PSTFEPHKNGDFCIRVFSEKKADYQ  510 (714)
T ss_dssp             EEESSTTCCEEEEEEEEEEESSCC-
T ss_pred             EecCCCCCccceeEEEeccCCccee
Confidence            9999998899999999998775433

>3sg6_A Gcamp2, myosin light chain kinase, green fluorescent PROT calmodulin chimera; calcium sensor, fluorescent protein; HET: CRO; 1.70A {Gallus gallus} PDB: 3evu_A* 3ek4_A* 3ek7_A* 3evv_A* 3ek8_A* 3ekh_A* 3sg2_A* 3sg3_A* 3sg7_A* 3ekj_A* 3sg4_A* 3sg5_A* 3evr_A* 3o78_A* 3o77_A* 1trf_A

Probab=93.47  E-value=0.013  Score=54.89  Aligned_cols=44  Identities=7%  Similarity=-0.072  Sum_probs=35.3

Q ss_pred             cccCccccCcceEEEEEEecCCCccEEEEeeccCCCCcccEEEEEEeCCCcee
Q psy1440         219 YLDGVRINSPHYLCKIILNENSSRKYTLVVSQYEKMHTIYYTLRAYATCPFRL  271 (283)
Q Consensus       219 ~~sg~y~~~~~~~~~~~l~~l~~G~Y~vVpST~~p~~~g~F~L~v~s~~~~~l  271 (283)
                      +.+..|++.|++   +   .|+||.|   |||++|.++|+|.||+++...+..
T Consensus       244 a~s~~y~n~ReV---~---~L~pG~y---PSt~Ep~~EgdflLRvfs~k~iD~  287 (450)
T 3sg6_A          244 AMPEGYIQERTI---F---FKDDGNY---KTRAEVKFEGDTLVNRIELKGIDF  287 (450)
T ss_dssp             TTTTCEEEEEEE---E---ETTSCEE---EEEEEEEEETTEEEEEEEEEEESC
T ss_pred             cCCccceeecce---e---ccCCCCC---CcccchhhccchhhheeccccCCc
Confidence            456678877774   2   2699999   999999999999999998765544

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	283
d1df0a2	159	b.14.1.1 (A:356-514) Calpain large subunit, middle	8e-13
d1df0a2	159	b.14.1.1 (A:356-514) Calpain large subunit, middle	3e-12
d1qxpa3	159	b.14.1.1 (A:356-514) Calpain large subunit, middle	2e-06
d1qxpa3	159	b.14.1.1 (A:356-514) Calpain large subunit, middle	1e-05

>d1df0a2 b.14.1.1 (A:356-514) Calpain large subunit, middle domain (domain III) {Rat (Rattus norvegicus), M-type [TaxId: 10116]} Length = 159

class: All beta proteins
fold: Calpain large subunit, middle domain (domain III)
superfamily: Calpain large subunit, middle domain (domain III)
family: Calpain large subunit, middle domain (domain III)
domain: Calpain large subunit, middle domain (domain III)
species: Rat (Rattus norvegicus), M-type [TaxId: 10116]

 Score = 62.9 bits (152), Expect = 8e-13
 Identities = 21/155 (13%), Positives = 46/155 (29%), Gaps = 26/155 (16%)

Query: 144 QASWSAGQ---GPIKDVYNIGENPQFRLEV----------GGGVGAVWILLTRHITQLED 190
             +W  G    G          NPQ+ +++            G   +  L+ +H  +   
Sbjct: 7   DGNWRRGSTAGGCRNYPNTFWMNPQYLIKLEEEDEDDEDGERGCTFLVGLIQKHRRRQRK 66

Query: 191 FKQNREYITVLVYKNEG----------KRVYYPYDPPPYLDGVRINSPHYLCKIILNENS 240
             ++   I   +Y+              + ++            IN    L +  L    
Sbjct: 67  MGEDMHTIGFGIYEVPEELTGQTNIHLSKNFFLTTRARERSDTFINLREVLNRFKLPPGE 126

Query: 241 SRKYTLVVSQYEKMHTIYYTLRAYATCPFRLEKIE 275
              Y LV S +E      + +R ++      + ++
Sbjct: 127 ---YVLVPSTFEPHKNGDFCIRVFSEKKADYQTVD 158

>d1df0a2 b.14.1.1 (A:356-514) Calpain large subunit, middle domain (domain III) {Rat (Rattus norvegicus), M-type [TaxId: 10116]} Length = 159

class: All beta proteins
fold: Calpain large subunit, middle domain (domain III)
superfamily: Calpain large subunit, middle domain (domain III)
family: Calpain large subunit, middle domain (domain III)
domain: Calpain large subunit, middle domain (domain III)
species: Rat (Rattus norvegicus), M-type [TaxId: 10116]

 Score = 61.0 bits (147), Expect = 3e-12
 Identities = 22/147 (14%), Positives = 44/147 (29%), Gaps = 24/147 (16%)

Query: 15  YTAGQGPIKDVYNIGENPQFRLEV----------GGGVGAVWILLTRHITQLEDFKQNRE 64
            TAG G          NPQ+ +++            G   +  L+ +H  +     ++  
Sbjct: 14  STAG-GCRNYPNTFWMNPQYLIKLEEEDEDDEDGERGCTFLVGLIQKHRRRQRKMGEDMH 72

Query: 65  YITVLVYKNEG----------KRVYYPYDPPPYLDGVRINSPHYLCKIILNENSSRKYTL 114
            I   +Y+              + ++            IN    L +  L       Y L
Sbjct: 73  TIGFGIYEVPEELTGQTNIHLSKNFFLTTRARERSDTFINLREVLNRFKLPPGE---YVL 129

Query: 115 VVSQYEKMHTIYYTLRAYATCPFRLEK 141
           V S +E      + +R ++      + 
Sbjct: 130 VPSTFEPHKNGDFCIRVFSEKKADYQT 156

>d1qxpa3 b.14.1.1 (A:356-514) Calpain large subunit, middle domain (domain III) {Rat (Rattus norvegicus), mu-type [TaxId: 10116]} Length = 159

class: All beta proteins
fold: Calpain large subunit, middle domain (domain III)
superfamily: Calpain large subunit, middle domain (domain III)
family: Calpain large subunit, middle domain (domain III)
domain: Calpain large subunit, middle domain (domain III)
species: Rat (Rattus norvegicus), mu-type [TaxId: 10116]

 Score = 44.3 bits (104), Expect = 2e-06
 Identities = 26/156 (16%), Positives = 49/156 (31%), Gaps = 27/156 (17%)

Query: 144 QASWSAGQ---GPIKDVYNIGENPQFRLEV------------GGGVGAVWILLTRHITQL 188
           + +W  G    G          NPQF++ +              G   +  L+ +H  + 
Sbjct: 7   EGTWRRGSTAGGCRNYPATFWVNPQFKIRLEEVDDADDYDSRESGCSFLLALMQKHRRRE 66

Query: 189 EDFKQNREYITVLVYKNEGKRVYYPYDPPPYL---------DGVRINSPHYLCKIILNEN 239
             F ++ E I   VY+   +    P                    IN      +I L   
Sbjct: 67  RRFGRDMETIGFAVYQVPRELAGQPVHLKRDFFLANASRAQSEHFINLREVSNRIRLPPG 126

Query: 240 SSRKYTLVVSQYEKMHTIYYTLRAYATCPFRLEKIE 275
               Y +V S +E      + LR ++      ++++
Sbjct: 127 E---YIVVPSTFEPNKEGDFLLRFFSEKKAGTQELD 159

>d1qxpa3 b.14.1.1 (A:356-514) Calpain large subunit, middle domain (domain III) {Rat (Rattus norvegicus), mu-type [TaxId: 10116]} Length = 159

class: All beta proteins
fold: Calpain large subunit, middle domain (domain III)
superfamily: Calpain large subunit, middle domain (domain III)
family: Calpain large subunit, middle domain (domain III)
domain: Calpain large subunit, middle domain (domain III)
species: Rat (Rattus norvegicus), mu-type [TaxId: 10116]

 Score = 42.8 bits (100), Expect = 1e-05
 Identities = 27/148 (18%), Positives = 46/148 (31%), Gaps = 25/148 (16%)

Query: 15  YTAGQGPIKDVYNIGENPQFRLEV------------GGGVGAVWILLTRHITQLEDFKQN 62
            TAG G          NPQF++ +              G   +  L+ +H  +   F ++
Sbjct: 14  STAG-GCRNYPATFWVNPQFKIRLEEVDDADDYDSRESGCSFLLALMQKHRRRERRFGRD 72

Query: 63  REYITVLVYKNEGKRVYYPYDPPPYL---------DGVRINSPHYLCKIILNENSSRKYT 113
            E I   VY+   +    P                    IN      +I L       Y 
Sbjct: 73  METIGFAVYQVPRELAGQPVHLKRDFFLANASRAQSEHFINLREVSNRIRLPPGE---YI 129

Query: 114 LVVSQYEKMHTIYYTLRAYATCPFRLEK 141
           +V S +E      + LR ++      ++
Sbjct: 130 VVPSTFEPNKEGDFLLRFFSEKKAGTQE 157

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	283
d1df0a2	159	Calpain large subunit, middle domain (domain III)	99.93
d1qxpa3	159	Calpain large subunit, middle domain (domain III)	99.92
d1qxpa3	159	Calpain large subunit, middle domain (domain III)	99.4
d1df0a2	159	Calpain large subunit, middle domain (domain III)	99.39
d1nqja_	101	Class 1 collagenase {Bacteria (Clostridium histoly	86.59
d1nqja_	101	Class 1 collagenase {Bacteria (Clostridium histoly	81.15

>d1df0a2 b.14.1.1 (A:356-514) Calpain large subunit, middle domain (domain III) {Rat (Rattus norvegicus), M-type [TaxId: 10116]}

class: All beta proteins
fold: Calpain large subunit, middle domain (domain III)
superfamily: Calpain large subunit, middle domain (domain III)
family: Calpain large subunit, middle domain (domain III)
domain: Calpain large subunit, middle domain (domain III)
species: Rat (Rattus norvegicus), M-type [TaxId: 10116]

Probab=99.93  E-value=5.3e-26  Score=184.89  Aligned_cols=132  Identities=14%  Similarity=0.241  Sum_probs=97.0

Q ss_pred             ccceeeeCCC--CCCC-CCCCCCCCCeEEEEEcCC---------CceEEEeeeccccc-cccccCCceEEEEEEEEeCCc
Q psy1440         142 RPQASWSAGQ--GPIK-DVYNIGENPQFRLEVGGG---------VGAVWILLTRHITQ-LEDFKQNREYITVLVYKNEGK  208 (283)
Q Consensus       142 ~~~G~W~~~~--Gg~~-~~~tf~~NPQy~l~v~~~---------~~~v~i~L~~~~~~-~~~~~i~~~~i~~~v~~~~g~  208 (283)
                      +++|+|++|.  ||+. +..||++||||.|+|.+.         .++|.|.|+|..+. .+........||++|+++...
T Consensus         5 ~~~G~W~~g~tAGG~~~~~~tf~~NPQy~l~v~~~~~~~~~~~~~~~v~v~L~q~~~r~~~~~~~~~~~IGf~v~~~~~~   84 (159)
T d1df0a2           5 KMDGNWRRGSTAGGCRNYPNTFWMNPQYLIKLEEEDEDDEDGERGCTFLVGLIQKHRRRQRKMGEDMHTIGFGIYEVPEE   84 (159)
T ss_dssp             EEEEEECTTTTCCCSTTCHHHHTTSCCEEEEECSCCCCSSSC-CCEEEEEEEEECCCTTCCSTTCSCCCEEEEEEEC---
T ss_pred             EEeCEEeCCCCccCCCCCccccccCCEEEEEecCCCcccccCccceEEEEEeeccCchhccccCccccceEEEEEEeecc
Confidence            4699999864  5554 446999999999999741         24688999883322 222223445688899986431


Q ss_pred             ----------eeecCCCCCCcccCccccCcceEEEEEEecCCCccEEEEeeccCCCCcccEEEEEEeCCCceeeecCC
Q psy1440         209 ----------RVYYPYDPPPYLDGVRINSPHYLCKIILNENSSRKYTLVVSQYEKMHTIYYTLRAYATCPFRLEKIEN  276 (283)
Q Consensus       209 ----------rv~~~~~~~~~~sg~y~~~~~~~~~~~l~~l~~G~Y~vVpST~~p~~~g~F~L~v~s~~~~~l~~i~~  276 (283)
                                +.++.....++.++.|.++|++.+++.|   +||.|+||||||+|+++|+|.|||||+.++.+++|++
T Consensus        85 ~~~~~~~~l~~~~~~~~~~~~~s~~~~~~rev~~~~~L---~pG~Y~IVPsT~~p~~~g~F~Lrvfs~~~~~~~el~~  159 (159)
T d1df0a2          85 LTGQTNIHLSKNFFLTTRARERSDTFINLREVLNRFKL---PPGEYVLVPSTFEPHKNGDFCIRVFSEKKADYQTVDD  159 (159)
T ss_dssp             ---------CCCCSCC----CCCCCCBCSSEEEEEEEE---CSEEEEEEEEESSSSCCEEEEEEEEESSCEEEEECCC
T ss_pred             cCcccccccChhhccccCceeccCCeecccEEEEEEEe---CCCCEEEEeEecCCCCEeeEEEEEEECCCCCeEeCCC
Confidence                      1123333446788899999998888876   8999999999999999999999999999999999874

>d1qxpa3 b.14.1.1 (A:356-514) Calpain large subunit, middle domain (domain III) {Rat (Rattus norvegicus), mu-type [TaxId: 10116]}

class: All beta proteins
fold: Calpain large subunit, middle domain (domain III)
superfamily: Calpain large subunit, middle domain (domain III)
family: Calpain large subunit, middle domain (domain III)
domain: Calpain large subunit, middle domain (domain III)
species: Rat (Rattus norvegicus), mu-type [TaxId: 10116]

Probab=99.92  E-value=2.4e-25  Score=180.98  Aligned_cols=131  Identities=18%  Similarity=0.240  Sum_probs=96.1

Q ss_pred             ccceeeeCC-C-CCC-CCCCCCCCCCeEEEEEcC-----------CCceEEEeeecccccc-ccccCCceEEEEEEEEeC
Q psy1440         142 RPQASWSAG-Q-GPI-KDVYNIGENPQFRLEVGG-----------GVGAVWILLTRHITQL-EDFKQNREYITVLVYKNE  206 (283)
Q Consensus       142 ~~~G~W~~~-~-Gg~-~~~~tf~~NPQy~l~v~~-----------~~~~v~i~L~~~~~~~-~~~~i~~~~i~~~v~~~~  206 (283)
                      .++|+|+++ + ||+ ++..||++||||.|.+.+           ..+.|.|.|+|+.++. +....+...||++|++..
T Consensus         5 ~~~G~W~~g~tAGG~~~~~~tf~~NPQy~l~v~~~~~~~~~~~~~~~~~v~i~L~q~~~~~~~~~~~~~~~IGf~v~~~~   84 (159)
T d1qxpa3           5 FYEGTWRRGSTAGGCRNYPATFWVNPQFKIRLEEVDDADDYDSRESGCSFLLALMQKHRRRERRFGRDMETIGFAVYQVP   84 (159)
T ss_dssp             EEEEEECTTTTCCCCTTCTTTGGGSCBCEEEECSCCC-----CCSSCCEEEEEEEEC----------CCCCEEEEEEECC
T ss_pred             EEeCeEcCCCCcCCCCCcccccccCCEEEEEecCcccccccccCCCccEEEEEEeecCcccccccCCCcceEEEEEEEcc
Confidence            469999876 4 555 445699999999999974           1356888888744322 222234556889999875


Q ss_pred             Ccee---------ecCCCCCCcccCccccCcceEEEEEEecCCCccEEEEeeccCCCCcccEEEEEEeCCCceeeecC
Q psy1440         207 GKRV---------YYPYDPPPYLDGVRINSPHYLCKIILNENSSRKYTLVVSQYEKMHTIYYTLRAYATCPFRLEKIE  275 (283)
Q Consensus       207 g~rv---------~~~~~~~~~~sg~y~~~~~~~~~~~l~~l~~G~Y~vVpST~~p~~~g~F~L~v~s~~~~~l~~i~  275 (283)
                      +.+.         ++.....+..++.|.++|++.+++.|   +||.|+||||||+|+++|+|.|||||++++.+.++.
T Consensus        85 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~rev~~~~~l---~pG~Y~IVPsT~~p~~~g~F~LrVfs~~~~~~~eld  159 (159)
T d1qxpa3          85 RELAGQPVHLKRDFFLANASRAQSEHFINLREVSNRIRL---PPGEYIVVPSTFEPNKEGDFLLRFFSEKKAGTQELD  159 (159)
T ss_dssp             SCC----CCCCHHHHTTSCCCSBCSSCBSSSCEEEEEEC---CSEEEEEEEEESSSSCCEEEEEEEEESSCEEECCBC
T ss_pred             ccccCcccccCcccccccccccccCCcccCeEEEEEEEe---CCCCEEEEeeecCCCCEEeEEEEEEECCCCCeEeCC
Confidence            4321         12233445678899999998888765   999999999999999999999999999999998763

>d1qxpa3 b.14.1.1 (A:356-514) Calpain large subunit, middle domain (domain III) {Rat (Rattus norvegicus), mu-type [TaxId: 10116]}

class: All beta proteins
fold: Calpain large subunit, middle domain (domain III)
superfamily: Calpain large subunit, middle domain (domain III)
family: Calpain large subunit, middle domain (domain III)
domain: Calpain large subunit, middle domain (domain III)
species: Rat (Rattus norvegicus), mu-type [TaxId: 10116]

Probab=99.40  E-value=1.8e-12  Score=103.97  Aligned_cols=129  Identities=19%  Similarity=0.206  Sum_probs=91.4

Q ss_pred             cceecccCC--CCCCcCC-CCCCCCCcEEEEEcCC-----------CceEEEEEEecccccc-cccCCCCeEEEEEEeeC
Q psy1440          10 NYLLAYTAG--QGPIKDV-YNIGENPQFRLEVGGG-----------VGAVWILLTRHITQLE-DFKQNREYITVLVYKNE   74 (283)
Q Consensus        10 ~ly~nW~p~--~~~~~d~-~~~~~NPQy~l~~~~~-----------~~~vwvlL~rH~~~~~-d~~~~~~~i~l~v~~~~   74 (283)
                      .+...|..+  .|.+++. .+|..||||.|++...           ...|-|.|.++..... ....+...|+++||+.+
T Consensus         5 ~~~G~W~~g~tAGG~~~~~~tf~~NPQy~l~v~~~~~~~~~~~~~~~~~v~i~L~q~~~~~~~~~~~~~~~IGf~v~~~~   84 (159)
T d1qxpa3           5 FYEGTWRRGSTAGGCRNYPATFWVNPQFKIRLEEVDDADDYDSRESGCSFLLALMQKHRRRERRFGRDMETIGFAVYQVP   84 (159)
T ss_dssp             EEEEEECTTTTCCCCTTCTTTGGGSCBCEEEECSCCC-----CCSSCCEEEEEEEEC----------CCCCEEEEEEECC
T ss_pred             EEeCeEcCCCCcCCCCCcccccccCCEEEEEecCcccccccccCCCccEEEEEEeecCcccccccCCCcceEEEEEEEcc
Confidence            456789764  4777765 5999999999999641           2457777776544322 11234467999999985


Q ss_pred             CeEEEcc---------CCCCCCcccceeCCceEEEEEEecCCCCccEEEEEeccccccccccEEEEEeCcceEEec
Q psy1440          75 GKRVYYP---------YDPPPYLDGVRINSPHYLCKIILNENSSRKYTLVVSQYEKMHTIYYTLRAYATCPFRLEK  141 (283)
Q Consensus        75 g~rv~~~---------~~~~~~~~g~~~ns~~~l~~~~~~p~~~~~ytlV~s~~e~~~~~~ftL~~~s~~~~~l~~  141 (283)
                      +.+....         .+......+.|+|++.+..++.|+|+   .|+||+|+|++..++.|.|++|+..++.+++
T Consensus        85 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~rev~~~~~l~pG---~Y~IVPsT~~p~~~g~F~LrVfs~~~~~~~e  157 (159)
T d1qxpa3          85 RELAGQPVHLKRDFFLANASRAQSEHFINLREVSNRIRLPPG---EYIVVPSTFEPNKEGDFLLRFFSEKKAGTQE  157 (159)
T ss_dssp             SCC----CCCCHHHHTTSCCCSBCSSCBSSSCEEEEEECCSE---EEEEEEEESSSSCCEEEEEEEEESSCEEECC
T ss_pred             ccccCcccccCcccccccccccccCCcccCeEEEEEEEeCCC---CEEEEeeecCCCCEEeEEEEEEECCCCCeEe
Confidence            4432221         12223446789999999999999986   8999999999999999999999999988765

>d1df0a2 b.14.1.1 (A:356-514) Calpain large subunit, middle domain (domain III) {Rat (Rattus norvegicus), M-type [TaxId: 10116]}

class: All beta proteins
fold: Calpain large subunit, middle domain (domain III)
superfamily: Calpain large subunit, middle domain (domain III)
family: Calpain large subunit, middle domain (domain III)
domain: Calpain large subunit, middle domain (domain III)
species: Rat (Rattus norvegicus), M-type [TaxId: 10116]

Probab=99.39  E-value=1.3e-12  Score=104.69  Aligned_cols=129  Identities=14%  Similarity=0.170  Sum_probs=90.8

Q ss_pred             cceecccCC--CCCCcCC-CCCCCCCcEEEEEcCC---------CceEEEEEEecccccc-cccCCCCeEEEEEEeeCCe
Q psy1440          10 NYLLAYTAG--QGPIKDV-YNIGENPQFRLEVGGG---------VGAVWILLTRHITQLE-DFKQNREYITVLVYKNEGK   76 (283)
Q Consensus        10 ~ly~nW~p~--~~~~~d~-~~~~~NPQy~l~~~~~---------~~~vwvlL~rH~~~~~-d~~~~~~~i~l~v~~~~g~   76 (283)
                      .+-..|..+  .|.+++. .+|..||||.|++...         +..|-|.|.+...... ........|+++||+.+..
T Consensus         5 ~~~G~W~~g~tAGG~~~~~~tf~~NPQy~l~v~~~~~~~~~~~~~~~v~v~L~q~~~r~~~~~~~~~~~IGf~v~~~~~~   84 (159)
T d1df0a2           5 KMDGNWRRGSTAGGCRNYPNTFWMNPQYLIKLEEEDEDDEDGERGCTFLVGLIQKHRRRQRKMGEDMHTIGFGIYEVPEE   84 (159)
T ss_dssp             EEEEEECTTTTCCCSTTCHHHHTTSCCEEEEECSCCCCSSSC-CCEEEEEEEEECCCTTCCSTTCSCCCEEEEEEEC---
T ss_pred             EEeCEEeCCCCccCCCCCccccccCCEEEEEecCCCcccccCccceEEEEEeeccCchhccccCccccceEEEEEEeecc
Confidence            466789875  3677765 5899999999999641         2357888876433221 1123345699999997432


Q ss_pred             --E---EEccCC----CC-CCcccceeCCceEEEEEEecCCCCccEEEEEeccccccccccEEEEEeCcceEEec
Q psy1440          77 --R---VYYPYD----PP-PYLDGVRINSPHYLCKIILNENSSRKYTLVVSQYEKMHTIYYTLRAYATCPFRLEK  141 (283)
Q Consensus        77 --r---v~~~~~----~~-~~~~g~~~ns~~~l~~~~~~p~~~~~ytlV~s~~e~~~~~~ftL~~~s~~~~~l~~  141 (283)
                        +   ..++..    .. ....+.|+|++++.+++.|+||   .|+||+|+|++..+..|.|++||..++++++
T Consensus        85 ~~~~~~~~l~~~~~~~~~~~~~s~~~~~~rev~~~~~L~pG---~Y~IVPsT~~p~~~g~F~Lrvfs~~~~~~~e  156 (159)
T d1df0a2          85 LTGQTNIHLSKNFFLTTRARERSDTFINLREVLNRFKLPPG---EYVLVPSTFEPHKNGDFCIRVFSEKKADYQT  156 (159)
T ss_dssp             ---------CCCCSCC----CCCCCCBCSSEEEEEEEECSE---EEEEEEEESSSSCCEEEEEEEEESSCEEEEE
T ss_pred             cCcccccccChhhccccCceeccCCeecccEEEEEEEeCCC---CEEEEeEecCCCCEeeEEEEEEECCCCCeEe
Confidence              1   222221    12 2335679999999999999986   8999999999999999999999999988865

>d1nqja_ b.23.2.1 (A:) Class 1 collagenase {Bacteria (Clostridium histolyticum) [TaxId: 1498]}

class: All beta proteins
fold: CUB-like
superfamily: Collagen-binding domain
family: Collagen-binding domain
domain: Class 1 collagenase
species: Bacteria (Clostridium histolyticum) [TaxId: 1498]

Probab=86.59  E-value=2  Score=29.15  Aligned_cols=77  Identities=22%  Similarity=0.171  Sum_probs=43.2

Q ss_pred             eEEEEEcCCCceEEEeeeccccccccccCCceEEEEEEEEeCCceeecCCCCCCcccCccccCcceEEEEEEecCCCccE
Q psy1440         165 QFRLEVGGGVGAVWILLTRHITQLEDFKQNREYITVLVYKNEGKRVYYPYDPPPYLDGVRINSPHYLCKIILNENSSRKY  244 (283)
Q Consensus       165 Qy~l~v~~~~~~v~i~L~~~~~~~~~~~i~~~~i~~~v~~~~g~rv~~~~~~~~~~sg~y~~~~~~~~~~~l~~l~~G~Y  244 (283)
                      -|+|.+.+ +..|.|.|..    +.  ...+   -+.|+...|..+....     .++.   .........   +.+|+|
T Consensus        24 ~y~f~l~~-~~~v~i~l~~----~~--~~d~---~l~lyd~~g~~~~~~~-----~~~~---~~~~~~~~~---~~~GtY   82 (101)
T d1nqja_          24 YYSFEVKE-EGEVNIELDK----KD--EFGV---TWTLHPESNINDRITY-----GQVD---GNKVSNKVK---LRPGKY   82 (101)
T ss_dssp             EEEEEESS-CEEEEEEEEE----SS--SSEE---EEEEEECC----CCEE-----CEEE---TTEEEEEEE---ECSEEE
T ss_pred             EEEEECCC-CCEEEEEEeC----Cc--cCCe---EEEEEcCCCCEEEEec-----CCCC---CceEEEEEe---cCCeEE
Confidence            47899984 7788888853    11  1122   2568877664432110     1111   111122233   489999


Q ss_pred             EEEeeccCCCCcccEEEEEE
Q psy1440         245 TLVVSQYEKMHTIYYTLRAY  264 (283)
Q Consensus       245 ~vVpST~~p~~~g~F~L~v~  264 (283)
                      .|.+..|. + .|.|.|+|-
T Consensus        83 yi~V~~~~-g-~g~Y~L~v~  100 (101)
T d1nqja_          83 YLLVYKYS-G-SGNYELRVN  100 (101)
T ss_dssp             EEEEEEEE-S-CEEEEEEEE
T ss_pred             EEEEEecC-C-cEeEEEEEc
Confidence            99998875 4 589999884

>d1nqja_ b.23.2.1 (A:) Class 1 collagenase {Bacteria (Clostridium histolyticum) [TaxId: 1498]}

class: All beta proteins
fold: CUB-like
superfamily: Collagen-binding domain
family: Collagen-binding domain
domain: Class 1 collagenase
species: Bacteria (Clostridium histolyticum) [TaxId: 1498]

Probab=81.15  E-value=5.9  Score=26.54  Aligned_cols=76  Identities=24%  Similarity=0.271  Sum_probs=44.9

Q ss_pred             cEEEEEcCCCceEEEEEEecccccccccCCCCeEEEEEEeeCCeEEEccCCCCCCcccceeCCceEEEEEEecCCCCccE
Q psy1440          33 QFRLEVGGGVGAVWILLTRHITQLEDFKQNREYITVLVYKNEGKRVYYPYDPPPYLDGVRINSPHYLCKIILNENSSRKY  112 (283)
Q Consensus        33 Qy~l~~~~~~~~vwvlL~rH~~~~~d~~~~~~~i~l~v~~~~g~rv~~~~~~~~~~~g~~~ns~~~l~~~~~~p~~~~~y  112 (283)
                      =|++.+.++ +.|.|-|..-        . ..-+-|.+|+.+|..+......+        +.-.....+.+.+|   .|
T Consensus        24 ~y~f~l~~~-~~v~i~l~~~--------~-~~d~~l~lyd~~g~~~~~~~~~~--------~~~~~~~~~~~~~G---tY   82 (101)
T d1nqja_          24 YYSFEVKEE-GEVNIELDKK--------D-EFGVTWTLHPESNINDRITYGQV--------DGNKVSNKVKLRPG---KY   82 (101)
T ss_dssp             EEEEEESSC-EEEEEEEEES--------S-SSEEEEEEEECC----CCEECEE--------ETTEEEEEEEECSE---EE
T ss_pred             EEEEECCCC-CEEEEEEeCC--------c-cCCeEEEEEcCCCCEEEEecCCC--------CCceEEEEEecCCe---EE
Confidence            477888764 7888877731        1 12367899998886654432211        12233455666664   88


Q ss_pred             EEEEeccccccccccEEEE
Q psy1440         113 TLVVSQYEKMHTIYYTLRA  131 (283)
Q Consensus       113 tlV~s~~e~~~~~~ftL~~  131 (283)
                      .+.|..|..  ..+|+|.+
T Consensus        83 yi~V~~~~g--~g~Y~L~v   99 (101)
T d1nqja_          83 YLLVYKYSG--SGNYELRV   99 (101)
T ss_dssp             EEEEEEEES--CEEEEEEE
T ss_pred             EEEEEecCC--cEeEEEEE
Confidence            888877754  67788876